Query 007554
Match_columns 599
No_of_seqs 431 out of 3123
Neff 7.5
Searched_HMMs 29240
Date Mon Mar 25 04:40:36 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007554.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/007554hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3tui_C Methionine import ATP-b 100.0 2E-49 7E-54 417.4 30.2 220 51-283 24-252 (366)
2 3fvq_A Fe(3+) IONS import ATP- 100.0 1.8E-49 6.1E-54 417.7 28.5 217 51-284 4-228 (359)
3 3rlf_A Maltose/maltodextrin im 100.0 3E-49 1E-53 418.6 30.4 217 51-284 3-223 (381)
4 3tif_A Uncharacterized ABC tra 100.0 7.9E-49 2.7E-53 392.3 29.2 220 52-282 2-232 (235)
5 2olj_A Amino acid ABC transpor 100.0 1.2E-48 4.2E-53 396.8 29.6 216 51-283 24-247 (263)
6 3gfo_A Cobalt import ATP-bindi 100.0 9E-49 3.1E-53 400.1 28.4 218 51-284 7-233 (275)
7 1b0u_A Histidine permease; ABC 100.0 1.1E-48 3.8E-53 397.4 28.6 216 51-283 6-241 (262)
8 2pcj_A ABC transporter, lipopr 100.0 1.6E-48 5.5E-53 387.4 28.9 211 51-279 4-223 (224)
9 1vpl_A ABC transporter, ATP-bi 100.0 3.9E-48 1.3E-52 391.7 29.8 217 51-284 15-235 (256)
10 1g6h_A High-affinity branched- 100.0 1.8E-48 6.1E-53 395.0 25.9 217 51-281 7-239 (257)
11 1g29_1 MALK, maltose transport 100.0 6.8E-48 2.3E-52 409.1 31.1 217 51-284 3-229 (372)
12 2it1_A 362AA long hypothetical 100.0 3.9E-48 1.3E-52 408.9 28.8 216 52-284 4-223 (362)
13 2yyz_A Sugar ABC transporter, 100.0 3.3E-48 1.1E-52 409.1 28.2 216 52-284 4-223 (359)
14 1z47_A CYSA, putative ABC-tran 100.0 5.4E-48 1.8E-52 406.5 28.9 219 49-283 12-234 (355)
15 1oxx_K GLCV, glucose, ABC tran 100.0 4.3E-48 1.5E-52 408.1 27.6 215 52-283 4-229 (353)
16 1ji0_A ABC transporter; ATP bi 100.0 7E-48 2.4E-52 386.7 26.9 215 51-283 6-227 (240)
17 4g1u_C Hemin import ATP-bindin 100.0 9E-48 3.1E-52 391.4 27.2 215 50-283 10-236 (266)
18 1v43_A Sugar-binding transport 100.0 6.6E-48 2.3E-52 408.6 27.1 216 52-284 12-231 (372)
19 3nh6_A ATP-binding cassette SU 100.0 3.1E-48 1.1E-52 401.3 22.7 247 1-284 19-277 (306)
20 3d31_A Sulfate/molybdate ABC t 100.0 2.6E-47 8.8E-52 400.9 26.1 211 52-283 2-216 (348)
21 2onk_A Molybdate/tungstate ABC 100.0 6.5E-47 2.2E-51 379.4 25.4 210 52-283 2-215 (240)
22 2yz2_A Putative ABC transporte 100.0 8.2E-47 2.8E-51 384.6 25.4 218 51-284 2-227 (266)
23 2d2e_A SUFC protein; ABC-ATPas 100.0 9E-47 3.1E-51 380.9 25.2 216 51-280 3-229 (250)
24 2ihy_A ABC transporter, ATP-bi 100.0 1.2E-46 4.2E-51 385.4 21.6 219 50-282 20-250 (279)
25 2nq2_C Hypothetical ABC transp 100.0 1.7E-45 5.7E-50 372.1 28.4 210 51-282 4-215 (253)
26 2zu0_C Probable ATP-dependent 100.0 1.6E-45 5.3E-50 375.3 27.4 221 51-284 20-254 (267)
27 2ixe_A Antigen peptide transpo 100.0 6.6E-46 2.2E-50 378.8 21.6 217 51-284 16-245 (271)
28 2ff7_A Alpha-hemolysin translo 100.0 2.3E-45 8E-50 369.8 24.5 214 50-283 6-231 (247)
29 2qi9_C Vitamin B12 import ATP- 100.0 3.7E-45 1.3E-49 368.5 24.5 205 51-282 4-220 (249)
30 1mv5_A LMRA, multidrug resista 100.0 1.8E-45 6.1E-50 370.0 18.5 212 52-283 2-225 (243)
31 4a82_A Cystic fibrosis transme 100.0 6.5E-45 2.2E-49 409.2 22.3 247 2-284 306-564 (578)
32 2ghi_A Transport protein; mult 100.0 2.7E-44 9.1E-49 364.8 24.0 213 51-283 17-241 (260)
33 3qf4_A ABC transporter, ATP-bi 100.0 5.2E-45 1.8E-49 410.4 20.8 247 2-284 308-566 (587)
34 1sgw_A Putative ABC transporte 100.0 3.4E-45 1.2E-49 360.4 16.2 204 48-273 7-210 (214)
35 2pjz_A Hypothetical protein ST 100.0 3.9E-44 1.3E-48 363.8 24.0 208 52-283 2-214 (263)
36 3b60_A Lipid A export ATP-bind 100.0 7.1E-44 2.4E-48 401.2 27.5 246 2-284 310-567 (582)
37 2yl4_A ATP-binding cassette SU 100.0 1.2E-43 4.2E-48 400.2 29.2 250 2-283 307-569 (595)
38 3b5x_A Lipid A export ATP-bind 100.0 7.8E-44 2.7E-48 400.9 26.9 245 2-283 310-566 (582)
39 3qf4_B Uncharacterized ABC tra 100.0 2.2E-44 7.5E-49 406.3 19.9 245 2-284 322-578 (598)
40 2pze_A Cystic fibrosis transme 100.0 1.6E-43 5.3E-48 352.7 22.8 204 51-283 6-217 (229)
41 2cbz_A Multidrug resistance-as 100.0 2E-43 6.7E-48 353.7 21.6 206 52-283 4-216 (237)
42 3gd7_A Fusion complex of cysti 100.0 1.8E-43 6.1E-48 376.8 18.3 214 50-284 18-242 (390)
43 4f4c_A Multidrug resistance pr 100.0 2.6E-43 8.8E-48 428.0 21.7 250 2-284 1043-1304(1321)
44 4f4c_A Multidrug resistance pr 100.0 4.1E-43 1.4E-47 426.3 21.7 249 2-284 381-641 (1321)
45 3g5u_A MCG1178, multidrug resi 100.0 1.8E-41 6.2E-46 410.9 21.8 251 2-284 353-613 (1284)
46 2bbs_A Cystic fibrosis transme 100.0 6.2E-41 2.1E-45 344.7 19.0 199 51-283 40-246 (290)
47 3g5u_A MCG1178, multidrug resi 100.0 2.2E-40 7.4E-45 401.5 23.1 251 2-284 996-1258(1284)
48 3bk7_A ABC transporter ATP-bin 100.0 6.8E-37 2.3E-41 344.0 23.4 206 49-284 355-563 (607)
49 1yqt_A RNAse L inhibitor; ATP- 100.0 5.7E-37 2E-41 340.9 20.5 206 49-284 285-493 (538)
50 3ozx_A RNAse L inhibitor; ATP 100.0 3.6E-36 1.2E-40 333.9 23.7 207 49-283 267-476 (538)
51 3j16_B RLI1P; ribosome recycli 100.0 3.5E-35 1.2E-39 329.6 19.5 202 55-284 350-559 (608)
52 2iw3_A Elongation factor 3A; a 100.0 4.6E-34 1.6E-38 331.9 25.2 200 49-284 433-635 (986)
53 3bk7_A ABC transporter ATP-bin 100.0 3.3E-35 1.1E-39 330.4 12.1 192 55-272 95-305 (607)
54 3ux8_A Excinuclease ABC, A sub 100.0 1.7E-34 5.9E-39 329.9 18.2 208 68-283 30-297 (670)
55 1yqt_A RNAse L inhibitor; ATP- 100.0 3.8E-35 1.3E-39 326.3 12.3 194 52-271 21-234 (538)
56 2iw3_A Elongation factor 3A; a 100.0 3.7E-34 1.3E-38 332.6 15.2 208 50-278 670-981 (986)
57 3ux8_A Excinuclease ABC, A sub 100.0 8.7E-33 3E-37 315.9 20.7 196 68-283 334-639 (670)
58 3j16_B RLI1P; ribosome recycli 100.0 4.9E-32 1.7E-36 304.1 11.7 204 52-275 70-301 (608)
59 3ozx_A RNAse L inhibitor; ATP 100.0 1.2E-31 4.2E-36 297.6 11.6 179 71-273 15-215 (538)
60 3pih_A Uvrabc system protein A 100.0 9.8E-30 3.3E-34 295.3 24.3 200 69-283 597-901 (916)
61 2r6f_A Excinuclease ABC subuni 100.0 1.9E-30 6.4E-35 299.4 17.6 208 50-283 628-941 (972)
62 2vf7_A UVRA2, excinuclease ABC 100.0 4.4E-30 1.5E-34 295.9 19.5 208 50-283 501-826 (842)
63 2ygr_A Uvrabc system protein A 100.0 1.3E-29 4.5E-34 293.4 19.8 209 50-284 646-960 (993)
64 4aby_A DNA repair protein RECN 100.0 3.4E-28 1.2E-32 262.1 19.6 204 69-277 48-381 (415)
65 2npi_A Protein CLP1; CLP1-PCF1 100.0 2.3E-31 7.9E-36 289.8 -7.4 186 72-282 128-336 (460)
66 3qf7_A RAD50; ABC-ATPase, ATPa 99.9 6.6E-25 2.3E-29 232.9 18.9 83 191-275 276-364 (365)
67 3b85_A Phosphate starvation-in 99.9 1E-28 3.6E-33 241.9 -12.5 141 68-255 12-159 (208)
68 1e69_A Chromosome segregation 99.9 7.7E-25 2.6E-29 228.6 12.7 88 191-281 216-310 (322)
69 2v9p_A Replication protein E1; 99.9 1.2E-29 4.2E-34 261.6 -24.0 200 2-288 70-270 (305)
70 4gp7_A Metallophosphoesterase; 99.9 2.3E-25 7.8E-30 211.3 3.5 145 74-258 1-162 (171)
71 1tq4_A IIGP1, interferon-induc 99.9 4.2E-27 1.5E-31 252.2 -10.7 170 69-265 36-247 (413)
72 1ye8_A Protein THEP1, hypothet 99.9 3.4E-24 1.2E-28 204.8 3.9 147 84-275 2-159 (178)
73 1znw_A Guanylate kinase, GMP k 99.9 1.9E-26 6.6E-31 225.3 -17.1 180 68-269 8-202 (207)
74 3b9q_A Chloroplast SRP recepto 99.9 1.5E-23 5E-28 216.7 0.8 172 72-273 90-284 (302)
75 2o5v_A DNA replication and rep 99.8 5.5E-21 1.9E-25 201.6 15.7 86 189-282 259-354 (359)
76 3sop_A Neuronal-specific septi 99.8 1.9E-23 6.4E-28 212.7 -3.2 144 84-253 4-149 (270)
77 2og2_A Putative signal recogni 99.8 1.4E-22 4.6E-27 213.7 0.9 171 73-273 148-341 (359)
78 2dpy_A FLII, flagellum-specifi 99.8 6.8E-24 2.3E-28 229.8 -9.8 189 51-282 131-342 (438)
79 2pt7_A CAG-ALFA; ATPase, prote 99.8 1.5E-22 5.1E-27 211.8 0.4 129 71-272 160-291 (330)
80 3qkt_A DNA double-strand break 99.8 1.5E-20 5.3E-25 197.4 15.7 80 191-272 245-332 (339)
81 1z6g_A Guanylate kinase; struc 99.8 8.1E-25 2.8E-29 215.8 -20.3 153 69-242 10-175 (218)
82 3pih_A Uvrabc system protein A 99.8 1.3E-20 4.5E-25 218.9 11.4 161 99-283 385-559 (916)
83 4ad8_A DNA repair protein RECN 99.8 6.3E-20 2.2E-24 203.4 12.7 78 191-271 393-473 (517)
84 3aez_A Pantothenate kinase; tr 99.8 2.9E-22 9.9E-27 208.0 -7.5 123 79-227 87-209 (312)
85 1cr0_A DNA primase/helicase; R 99.8 4.9E-21 1.7E-25 197.0 1.3 183 69-273 22-237 (296)
86 2jeo_A Uridine-cytidine kinase 99.8 3.1E-21 1.1E-25 193.3 -0.9 179 67-286 10-189 (245)
87 1tf7_A KAIC; homohexamer, hexa 99.8 6.3E-20 2.2E-24 203.8 9.4 156 76-272 275-444 (525)
88 2o8b_B DNA mismatch repair pro 99.8 1E-20 3.5E-25 223.3 2.4 172 51-280 750-938 (1022)
89 2r6f_A Excinuclease ABC subuni 99.8 7.5E-19 2.6E-23 203.1 16.2 135 141-283 450-599 (972)
90 2vf7_A UVRA2, excinuclease ABC 99.8 2.6E-19 8.9E-24 206.5 9.2 172 90-283 270-474 (842)
91 2ygr_A Uvrabc system protein A 99.8 1.1E-18 3.9E-23 202.3 14.2 137 140-284 466-617 (993)
92 3thx_A DNA mismatch repair pro 99.8 6.4E-19 2.2E-23 205.6 12.0 152 68-282 648-811 (934)
93 2obl_A ESCN; ATPase, hydrolase 99.8 1.6E-20 5.4E-25 197.6 -1.5 191 50-282 44-253 (347)
94 1f2t_B RAD50 ABC-ATPase; DNA d 99.8 1.2E-18 4.1E-23 161.1 10.4 82 190-273 53-142 (148)
95 1tf7_A KAIC; homohexamer, hexa 99.8 3.9E-20 1.3E-24 205.5 -1.6 167 68-271 24-210 (525)
96 2ehv_A Hypothetical protein PH 99.7 5.8E-20 2E-24 183.1 -1.5 166 72-269 19-206 (251)
97 2eyu_A Twitching motility prot 99.7 3E-19 1E-23 180.7 3.3 133 70-270 15-147 (261)
98 4a74_A DNA repair and recombin 99.7 1.6E-19 5.5E-24 177.5 -0.1 154 77-272 20-201 (231)
99 3asz_A Uridine kinase; cytidin 99.7 9.9E-21 3.4E-25 184.6 -11.5 145 79-254 3-161 (211)
100 3thx_B DNA mismatch repair pro 99.7 7.5E-18 2.6E-22 196.1 10.2 154 68-274 659-815 (918)
101 2qnr_A Septin-2, protein NEDD5 99.7 1.5E-19 5.1E-24 186.8 -4.4 162 55-255 2-168 (301)
102 1ewq_A DNA mismatch repair pro 99.7 1.8E-18 6.3E-23 198.4 2.9 133 68-262 565-704 (765)
103 1rj9_A FTSY, signal recognitio 99.7 1.5E-18 5.2E-23 179.3 -0.0 146 81-254 101-258 (304)
104 1pzn_A RAD51, DNA repair and r 99.7 8.8E-19 3E-23 184.7 -3.1 166 71-278 119-309 (349)
105 1wb9_A DNA mismatch repair pro 99.7 6.6E-18 2.3E-22 194.9 2.9 156 68-277 594-751 (800)
106 3szr_A Interferon-induced GTP- 99.7 5.5E-19 1.9E-23 199.2 -7.3 191 51-284 10-237 (608)
107 2i3b_A HCR-ntpase, human cance 99.7 3.3E-19 1.1E-23 171.8 -10.1 155 82-277 1-169 (189)
108 2w0m_A SSO2452; RECA, SSPF, un 99.7 1.5E-17 5.2E-22 163.2 1.7 171 69-271 9-192 (235)
109 1nlf_A Regulatory protein REPA 99.6 3.1E-16 1.1E-20 159.8 10.9 150 78-254 26-181 (279)
110 3jvv_A Twitching mobility prot 99.6 6.2E-17 2.1E-21 170.7 3.6 127 78-271 119-246 (356)
111 2qag_C Septin-7; cell cycle, c 99.6 1.1E-17 3.7E-22 179.8 -4.1 162 51-253 11-176 (418)
112 1pui_A ENGB, probable GTP-bind 99.6 2E-16 6.9E-21 153.1 2.5 175 52-246 4-202 (210)
113 3kta_B Chromosome segregation 99.6 8.3E-15 2.8E-19 138.8 11.2 79 191-272 61-145 (173)
114 1s96_A Guanylate kinase, GMP k 99.5 1.7E-16 5.9E-21 156.3 -2.3 147 77-286 11-162 (219)
115 2cvh_A DNA repair and recombin 99.5 1.2E-14 4.1E-19 141.6 10.8 155 69-271 6-185 (220)
116 2bdt_A BH3686; alpha-beta prot 99.5 2.8E-18 9.6E-23 164.3 -15.1 169 82-282 2-182 (189)
117 1zp6_A Hypothetical protein AT 99.5 7.8E-17 2.7E-21 154.1 -8.1 152 78-252 5-159 (191)
118 1lw7_A Transcriptional regulat 99.5 2.1E-17 7.1E-22 175.2 -16.1 167 71-269 157-342 (365)
119 2qag_B Septin-6, protein NEDD5 99.5 6.3E-16 2.2E-20 165.6 -4.7 173 69-253 28-218 (427)
120 2ewv_A Twitching motility prot 99.5 6.3E-15 2.2E-19 156.5 2.5 130 71-269 127-257 (372)
121 2gza_A Type IV secretion syste 99.5 7E-15 2.4E-19 155.6 2.3 135 72-272 165-303 (361)
122 2f1r_A Molybdopterin-guanine d 99.5 4.7E-16 1.6E-20 147.2 -7.4 137 83-244 3-163 (171)
123 2rcn_A Probable GTPase ENGC; Y 99.4 4.4E-14 1.5E-18 148.4 5.9 121 71-209 205-328 (358)
124 1nij_A Hypothetical protein YJ 99.4 1.5E-17 5.3E-22 173.0 -20.5 159 83-263 5-197 (318)
125 3auy_A DNA double-strand break 99.4 3.6E-13 1.2E-17 142.9 12.6 76 191-269 277-359 (371)
126 2bbw_A Adenylate kinase 4, AK4 99.4 2.9E-16 9.8E-21 157.0 -10.9 152 81-244 26-200 (246)
127 1n0w_A DNA repair protein RAD5 99.4 1E-13 3.5E-18 137.1 6.7 153 77-271 19-209 (243)
128 1htw_A HI0065; nucleotide-bind 99.4 4E-15 1.4E-19 139.1 -4.4 79 68-151 19-97 (158)
129 1odf_A YGR205W, hypothetical 3 99.4 1.3E-14 4.6E-19 148.7 -2.4 128 80-229 29-169 (290)
130 2yhs_A FTSY, cell division pro 99.4 2.2E-14 7.6E-19 155.6 -1.2 152 72-253 283-448 (503)
131 3e70_C DPA, signal recognition 99.4 5.1E-14 1.7E-18 146.8 0.3 140 80-253 127-278 (328)
132 2kjq_A DNAA-related protein; s 99.4 4E-13 1.4E-17 124.1 5.6 98 70-256 29-127 (149)
133 3ec2_A DNA replication protein 99.4 2.2E-13 7.5E-18 129.2 3.7 48 210-257 98-146 (180)
134 1w1w_A Structural maintenance 99.3 1.7E-12 5.9E-17 140.3 10.7 75 193-269 332-410 (430)
135 1udx_A The GTP-binding protein 99.3 3.3E-14 1.1E-18 152.7 -3.3 170 72-265 147-319 (416)
136 2qm8_A GTPase/ATPase; G protei 99.3 3.4E-15 1.2E-19 156.5 -11.0 172 52-242 30-260 (337)
137 2yv5_A YJEQ protein; hydrolase 99.3 9.4E-14 3.2E-18 143.3 -2.1 120 79-208 162-301 (302)
138 1p9r_A General secretion pathw 99.3 1.6E-15 5.4E-20 163.1 -17.5 133 70-217 157-314 (418)
139 1sxj_E Activator 1 40 kDa subu 99.3 2.9E-12 9.8E-17 134.2 7.3 134 85-256 39-176 (354)
140 3c8u_A Fructokinase; YP_612366 99.3 1.8E-14 6.3E-19 140.2 -8.9 164 79-286 19-183 (208)
141 2oap_1 GSPE-2, type II secreti 99.3 1.1E-14 3.9E-19 160.3 -12.9 175 69-262 247-457 (511)
142 3lda_A DNA repair protein RAD5 99.2 2.8E-11 9.6E-16 129.3 11.2 154 77-272 173-364 (400)
143 1ni3_A YCHF GTPase, YCHF GTP-b 99.2 1.3E-13 4.4E-18 146.7 -10.9 170 78-281 16-210 (392)
144 1u0l_A Probable GTPase ENGC; p 99.1 2.9E-12 1E-16 132.0 -3.0 105 78-197 165-294 (301)
145 1in4_A RUVB, holliday junction 99.1 5.4E-13 1.9E-17 139.5 -10.2 167 68-264 30-211 (334)
146 1t9h_A YLOQ, probable GTPase E 99.1 1.7E-11 5.9E-16 126.3 0.1 116 78-202 169-303 (307)
147 2x8a_A Nuclear valosin-contain 99.0 8.9E-14 3E-18 141.5 -17.3 141 68-237 32-190 (274)
148 1lvg_A Guanylate kinase, GMP k 99.0 3.3E-14 1.1E-18 137.6 -20.5 57 205-270 116-173 (198)
149 2dr3_A UPF0273 protein PH0284; 99.0 2E-09 6.7E-14 106.3 11.6 68 203-270 117-196 (247)
150 1vma_A Cell division protein F 99.0 2.3E-10 7.8E-15 118.0 4.0 113 75-241 97-212 (306)
151 2r6a_A DNAB helicase, replicat 98.9 2.5E-09 8.6E-14 116.3 10.2 174 69-273 190-401 (454)
152 1ls1_A Signal recognition part 98.9 2.9E-09 9.8E-14 109.3 8.9 118 73-240 91-209 (295)
153 2ius_A DNA translocase FTSK; n 98.9 7.3E-11 2.5E-15 129.3 -3.7 164 74-255 159-343 (512)
154 2px0_A Flagellar biosynthesis 98.9 2.3E-09 7.9E-14 110.1 7.4 141 80-276 103-247 (296)
155 3euj_A Chromosome partition pr 98.9 7.3E-10 2.5E-14 120.6 3.5 51 69-123 17-67 (483)
156 3k1j_A LON protease, ATP-depen 98.8 5.4E-11 1.9E-15 134.1 -6.0 157 68-239 46-227 (604)
157 1sq5_A Pantothenate kinase; P- 98.8 1.2E-10 4.2E-15 120.3 -3.6 94 52-156 38-156 (308)
158 2zr9_A Protein RECA, recombina 98.8 3.3E-09 1.1E-13 111.4 6.8 154 71-278 48-237 (349)
159 1oix_A RAS-related protein RAB 98.8 1.2E-09 4.3E-14 104.1 1.2 39 200-240 151-189 (191)
160 1iy2_A ATP-dependent metallopr 98.8 3.4E-12 1.2E-16 129.7 -17.8 122 69-215 62-190 (278)
161 1ixz_A ATP-dependent metallopr 98.7 4.9E-12 1.7E-16 126.5 -17.6 122 69-215 38-166 (254)
162 3tr0_A Guanylate kinase, GMP k 98.7 6.1E-10 2.1E-14 107.0 -2.3 66 76-148 1-71 (205)
163 2qtf_A Protein HFLX, GTP-bindi 98.5 5.2E-08 1.8E-12 102.9 6.0 149 84-242 181-353 (364)
164 1qhl_A Protein (cell division 98.5 2.4E-09 8.3E-14 105.5 -4.0 58 50-123 8-65 (227)
165 3lnc_A Guanylate kinase, GMP k 98.5 2.4E-08 8.3E-13 98.2 1.5 40 69-108 14-54 (231)
166 2ce7_A Cell division protein F 98.5 1.4E-07 4.9E-12 102.7 7.5 58 197-254 93-164 (476)
167 2f9l_A RAB11B, member RAS onco 98.5 5.5E-08 1.9E-12 93.0 2.9 37 203-241 130-166 (199)
168 3hr8_A Protein RECA; alpha and 98.4 6.9E-08 2.4E-12 101.3 3.4 38 71-108 48-87 (356)
169 2xau_A PRE-mRNA-splicing facto 98.4 3.5E-07 1.2E-11 105.7 8.1 73 193-266 189-263 (773)
170 4eun_A Thermoresistant glucoki 98.3 1.2E-08 4.1E-13 98.1 -4.6 41 76-123 23-63 (200)
171 4a1f_A DNAB helicase, replicat 98.3 3.4E-07 1.2E-11 95.4 4.6 130 69-252 33-164 (338)
172 3nwj_A ATSK2; P loop, shikimat 98.3 6.5E-08 2.2E-12 96.8 -1.6 53 51-107 17-73 (250)
173 2e87_A Hypothetical protein PH 98.2 1.3E-06 4.5E-11 91.7 7.9 60 193-254 230-292 (357)
174 3kta_A Chromosome segregation 98.2 1.5E-06 5.2E-11 81.6 5.3 38 70-108 13-52 (182)
175 3uie_A Adenylyl-sulfate kinase 98.1 9.8E-08 3.4E-12 91.7 -3.4 51 69-123 12-64 (200)
176 1zu4_A FTSY; GTPase, signal re 98.1 3.8E-07 1.3E-11 94.5 0.6 49 72-123 95-143 (320)
177 2dhr_A FTSH; AAA+ protein, hex 98.1 1.3E-08 4.6E-13 111.4 -11.3 128 69-223 53-187 (499)
178 3a00_A Guanylate kinase, GMP k 98.1 6.4E-07 2.2E-11 85.0 1.3 27 82-108 1-27 (186)
179 3vaa_A Shikimate kinase, SK; s 98.1 1.4E-06 4.8E-11 83.5 3.4 40 67-106 10-49 (199)
180 1fnn_A CDC6P, cell division co 98.1 9.9E-06 3.4E-10 84.9 9.9 43 211-254 124-169 (389)
181 2j41_A Guanylate kinase; GMP, 98.1 2.2E-06 7.6E-11 81.9 4.4 32 77-108 1-32 (207)
182 1jjv_A Dephospho-COA kinase; P 98.0 2.4E-06 8.1E-11 82.1 4.1 70 196-269 61-131 (206)
183 3t34_A Dynamin-related protein 98.0 1.4E-05 4.9E-10 83.8 10.4 57 195-252 155-212 (360)
184 1kgd_A CASK, peripheral plasma 98.0 1.9E-06 6.4E-11 81.3 2.8 36 81-118 4-39 (180)
185 3b9p_A CG5977-PA, isoform A; A 98.0 3.7E-05 1.3E-09 77.9 12.5 73 196-268 97-186 (297)
186 2z4s_A Chromosomal replication 98.0 2.7E-06 9.2E-11 92.0 3.2 70 211-280 193-264 (440)
187 3bh0_A DNAB-like replicative h 97.9 8.9E-06 3.1E-10 83.9 6.4 132 69-252 55-189 (315)
188 2vp4_A Deoxynucleoside kinase; 97.9 2.9E-06 9.9E-11 83.3 1.9 38 78-122 16-53 (230)
189 1v5w_A DMC1, meiotic recombina 97.9 8.3E-05 2.9E-09 77.5 12.9 138 77-253 117-273 (343)
190 1ega_A Protein (GTP-binding pr 97.9 1.1E-05 3.7E-10 82.7 5.5 64 195-266 101-170 (301)
191 2z43_A DNA repair and recombin 97.8 6.7E-05 2.3E-09 77.5 11.2 138 77-253 102-257 (324)
192 3tau_A Guanylate kinase, GMP k 97.8 8.3E-06 2.8E-10 78.8 3.9 29 80-108 6-34 (208)
193 4e22_A Cytidylate kinase; P-lo 97.8 2.1E-06 7E-11 85.7 -0.8 54 80-136 25-95 (252)
194 2qt1_A Nicotinamide riboside k 97.8 1.4E-05 4.9E-10 76.7 4.1 29 78-106 17-45 (207)
195 2dy1_A Elongation factor G; tr 97.7 1E-05 3.5E-10 91.9 3.3 44 76-121 3-46 (665)
196 1svm_A Large T antigen; AAA+ f 97.7 4.4E-06 1.5E-10 88.3 0.0 44 69-118 156-199 (377)
197 1rz3_A Hypothetical protein rb 97.7 5.5E-06 1.9E-10 79.5 0.4 40 79-121 19-58 (201)
198 3kl4_A SRP54, signal recogniti 97.7 7E-05 2.4E-09 80.4 8.8 125 81-253 96-223 (433)
199 1knq_A Gluconate kinase; ALFA/ 97.7 1.1E-05 3.7E-10 75.2 2.1 35 80-121 6-40 (175)
200 3tqc_A Pantothenate kinase; bi 97.7 4.3E-06 1.5E-10 86.5 -1.4 41 68-108 72-118 (321)
201 3llm_A ATP-dependent RNA helic 97.6 1.6E-05 5.5E-10 78.1 2.0 67 196-264 162-229 (235)
202 3cr8_A Sulfate adenylyltranfer 97.6 1.2E-05 4.1E-10 89.1 1.1 42 78-122 365-408 (552)
203 3ney_A 55 kDa erythrocyte memb 97.6 2.3E-05 7.8E-10 75.3 2.9 29 79-107 16-44 (197)
204 3cf0_A Transitional endoplasmi 97.6 8.1E-05 2.8E-09 76.0 7.2 29 78-106 45-73 (301)
205 1kag_A SKI, shikimate kinase I 97.6 2.4E-05 8.1E-10 72.6 2.7 27 81-107 3-29 (173)
206 1f2t_A RAD50 ABC-ATPase; DNA d 97.6 4.3E-05 1.5E-09 69.9 4.2 31 72-103 14-44 (149)
207 2qby_A CDC6 homolog 1, cell di 97.5 2E-05 6.7E-10 82.3 1.4 28 80-107 43-70 (386)
208 2q6t_A DNAB replication FORK h 97.5 0.00053 1.8E-08 73.9 11.9 171 69-269 187-396 (444)
209 1w1w_A Structural maintenance 97.4 5.7E-05 1.9E-09 81.2 3.4 33 77-109 21-53 (430)
210 1ypw_A Transitional endoplasmi 97.4 0.00013 4.4E-09 84.7 6.2 31 78-108 234-264 (806)
211 2w58_A DNAI, primosome compone 97.3 0.00026 8.8E-09 67.3 6.1 24 83-106 55-78 (202)
212 1l8q_A Chromosomal replication 97.3 0.0002 6.8E-09 73.6 5.7 46 210-255 96-142 (324)
213 2pez_A Bifunctional 3'-phospho 97.3 5.5E-05 1.9E-09 70.7 1.2 29 80-108 3-31 (179)
214 2p67_A LAO/AO transport system 97.3 2E-05 6.7E-10 82.3 -2.2 50 68-120 42-91 (341)
215 4eaq_A DTMP kinase, thymidylat 97.2 0.00011 3.8E-09 72.1 2.7 37 72-108 13-52 (229)
216 3qks_A DNA double-strand break 97.2 0.00018 6.2E-09 69.2 4.2 32 72-104 14-45 (203)
217 3lxx_A GTPase IMAP family memb 97.2 0.0028 9.5E-08 61.9 12.8 43 211-253 111-155 (239)
218 3ice_A Transcription terminati 97.2 3.4E-05 1.2E-09 81.1 -1.4 52 51-106 133-198 (422)
219 3h4m_A Proteasome-activating n 97.2 0.00065 2.2E-08 68.1 7.9 27 80-106 49-75 (285)
220 1u94_A RECA protein, recombina 97.1 0.0036 1.2E-07 65.5 13.2 35 71-105 50-86 (356)
221 2www_A Methylmalonic aciduria 97.1 9.6E-05 3.3E-09 77.3 1.2 39 80-121 72-110 (349)
222 2gj8_A MNME, tRNA modification 97.1 0.00052 1.8E-08 63.5 6.1 27 80-106 2-28 (172)
223 3m6a_A ATP-dependent protease 97.1 8.3E-05 2.8E-09 82.4 0.1 48 69-120 96-143 (543)
224 1cke_A CK, MSSA, protein (cyti 97.1 0.00026 8.9E-09 68.4 3.5 37 82-118 5-41 (227)
225 1m7g_A Adenylylsulfate kinase; 97.1 0.00011 3.7E-09 70.8 0.6 40 79-121 22-63 (211)
226 2b8t_A Thymidine kinase; deoxy 97.0 0.00096 3.3E-08 65.2 7.3 53 212-269 89-150 (223)
227 1mky_A Probable GTP-binding pr 97.0 0.00055 1.9E-08 73.7 6.0 40 83-122 181-229 (439)
228 2qor_A Guanylate kinase; phosp 97.0 0.00031 1E-08 67.2 3.1 28 79-106 9-36 (204)
229 3bos_A Putative DNA replicatio 97.0 0.00058 2E-08 66.0 5.1 44 211-254 103-148 (242)
230 3d8b_A Fidgetin-like protein 1 97.0 0.0032 1.1E-07 65.7 11.1 27 80-106 115-141 (357)
231 1m2o_B GTP-binding protein SAR 97.0 0.00055 1.9E-08 64.4 4.6 35 70-105 12-46 (190)
232 2i1q_A DNA repair and recombin 97.0 0.0035 1.2E-07 64.3 11.0 34 71-104 86-120 (322)
233 1np6_A Molybdopterin-guanine d 96.9 0.00035 1.2E-08 65.6 3.0 39 83-121 7-45 (174)
234 3bgw_A DNAB-like replicative h 96.9 0.0011 3.7E-08 71.5 7.1 35 70-104 185-219 (444)
235 1y63_A LMAJ004144AAA protein; 96.9 0.00038 1.3E-08 65.5 3.1 32 74-105 2-33 (184)
236 3auy_A DNA double-strand break 96.9 0.00073 2.5E-08 71.0 5.5 32 71-103 15-46 (371)
237 1xwi_A SKD1 protein; VPS4B, AA 96.9 0.0094 3.2E-07 61.3 13.3 27 80-106 43-69 (322)
238 1f6b_A SAR1; gtpases, N-termin 96.9 0.00022 7.6E-09 67.7 0.9 37 68-105 12-48 (198)
239 2qz4_A Paraplegin; AAA+, SPG7, 96.8 0.0053 1.8E-07 60.3 10.4 26 81-106 38-63 (262)
240 2if2_A Dephospho-COA kinase; a 96.7 0.00057 2E-08 65.0 2.9 21 84-104 3-23 (204)
241 2yvu_A Probable adenylyl-sulfa 96.7 0.00042 1.4E-08 65.0 1.8 30 79-108 10-39 (186)
242 2ffh_A Protein (FFH); SRP54, s 96.7 0.00035 1.2E-08 74.8 1.1 45 73-122 91-135 (425)
243 2v1u_A Cell division control p 96.7 0.0012 4E-08 68.7 5.0 27 80-106 42-68 (387)
244 2qag_A Septin-2, protein NEDD5 96.6 0.00018 6.1E-09 75.6 -1.8 46 51-107 17-62 (361)
245 2p5t_B PEZT; postsegregational 96.6 0.00055 1.9E-08 68.0 1.4 44 72-121 23-66 (253)
246 2ohf_A Protein OLA1, GTP-bindi 96.6 0.00095 3.3E-08 70.7 3.3 42 77-121 17-69 (396)
247 2ga8_A Hypothetical 39.9 kDa p 96.5 0.00027 9.3E-09 73.6 -1.1 38 70-107 10-49 (359)
248 3cm0_A Adenylate kinase; ATP-b 96.5 0.0012 4.2E-08 61.5 3.5 26 80-105 2-27 (186)
249 3t61_A Gluconokinase; PSI-biol 96.5 0.00095 3.2E-08 63.5 2.7 25 82-106 18-42 (202)
250 2wji_A Ferrous iron transport 96.5 0.0013 4.3E-08 60.2 3.5 23 84-106 5-27 (165)
251 2wjg_A FEOB, ferrous iron tran 96.5 0.0017 5.7E-08 60.3 4.3 22 84-105 9-30 (188)
252 1qhx_A CPT, protein (chloramph 96.5 0.0016 5.4E-08 60.3 3.6 26 82-107 3-28 (178)
253 1j8m_F SRP54, signal recogniti 96.4 0.00031 1.1E-08 71.7 -1.4 45 73-121 89-134 (297)
254 3kb2_A SPBC2 prophage-derived 96.4 0.0015 5.2E-08 59.8 3.3 23 84-106 3-25 (173)
255 2r8r_A Sensor protein; KDPD, P 96.4 0.0022 7.4E-08 62.7 4.4 74 208-288 80-175 (228)
256 1sxj_C Activator 1 40 kDa subu 96.4 0.00036 1.2E-08 72.3 -1.3 41 68-108 30-72 (340)
257 1q57_A DNA primase/helicase; d 96.4 0.028 9.6E-07 61.3 13.8 35 70-104 230-264 (503)
258 1lv7_A FTSH; alpha/beta domain 96.3 0.0013 4.6E-08 64.9 2.5 35 71-107 36-70 (257)
259 1q3t_A Cytidylate kinase; nucl 96.3 0.002 6.8E-08 63.0 3.4 29 78-106 12-40 (236)
260 2zej_A Dardarin, leucine-rich 96.3 0.0018 6.2E-08 60.3 3.0 23 84-106 4-26 (184)
261 1kht_A Adenylate kinase; phosp 96.2 0.0023 7.9E-08 59.6 3.5 25 82-106 3-27 (192)
262 3r20_A Cytidylate kinase; stru 96.2 0.0023 7.8E-08 62.9 3.4 25 82-106 9-33 (233)
263 2rhm_A Putative kinase; P-loop 96.1 0.0024 8.2E-08 59.7 3.1 27 80-106 3-29 (193)
264 2ze6_A Isopentenyl transferase 96.1 0.0026 8.9E-08 63.1 3.4 24 83-106 2-25 (253)
265 1ex7_A Guanylate kinase; subst 96.1 0.0028 9.6E-08 60.1 3.2 23 84-106 3-25 (186)
266 3lw7_A Adenylate kinase relate 96.1 0.003 1E-07 57.6 3.3 19 84-102 3-21 (179)
267 1xp8_A RECA protein, recombina 96.1 0.037 1.3E-06 58.0 11.9 27 78-104 70-96 (366)
268 3io5_A Recombination and repai 96.0 0.017 5.9E-07 59.2 8.8 27 77-104 24-51 (333)
269 3trf_A Shikimate kinase, SK; a 96.0 0.0035 1.2E-07 58.4 3.5 26 81-106 4-29 (185)
270 2v54_A DTMP kinase, thymidylat 96.0 0.0037 1.3E-07 59.1 3.7 26 81-106 3-28 (204)
271 1vht_A Dephospho-COA kinase; s 96.0 0.0036 1.2E-07 60.2 3.6 24 81-104 3-26 (218)
272 1xx6_A Thymidine kinase; NESG, 96.0 0.009 3.1E-07 56.8 6.3 53 212-269 81-142 (191)
273 2plr_A DTMP kinase, probable t 96.0 0.0041 1.4E-07 58.9 3.8 28 81-108 3-30 (213)
274 2jaq_A Deoxyguanosine kinase; 95.9 0.0038 1.3E-07 58.8 3.4 23 84-106 2-24 (205)
275 3iij_A Coilin-interacting nucl 95.9 0.0034 1.2E-07 58.3 3.0 25 81-105 10-34 (180)
276 2qp9_X Vacuolar protein sortin 95.9 0.025 8.5E-07 58.9 9.9 27 80-106 82-108 (355)
277 1xjc_A MOBB protein homolog; s 95.9 0.0031 1.1E-07 58.8 2.6 25 83-107 5-29 (169)
278 1ly1_A Polynucleotide kinase; 95.9 0.0045 1.5E-07 57.0 3.6 22 83-104 3-24 (181)
279 2j9r_A Thymidine kinase; TK1, 95.9 0.015 5.2E-07 56.1 7.3 53 212-269 101-162 (214)
280 1gvn_B Zeta; postsegregational 95.8 0.0043 1.5E-07 62.8 3.4 36 80-120 31-66 (287)
281 2wwf_A Thymidilate kinase, put 95.8 0.0046 1.6E-07 58.8 3.3 27 80-106 8-34 (212)
282 1via_A Shikimate kinase; struc 95.8 0.0047 1.6E-07 57.1 3.2 23 84-106 6-28 (175)
283 1uf9_A TT1252 protein; P-loop, 95.8 0.0049 1.7E-07 58.0 3.4 24 82-105 8-31 (203)
284 2c95_A Adenylate kinase 1; tra 95.8 0.0045 1.5E-07 58.0 3.1 27 80-106 7-33 (196)
285 1gtv_A TMK, thymidylate kinase 95.8 0.0023 8E-08 61.0 1.1 24 84-107 2-25 (214)
286 3cmw_A Protein RECA, recombina 95.7 0.1 3.5E-06 64.5 15.5 29 78-106 728-756 (1706)
287 1tev_A UMP-CMP kinase; ploop, 95.7 0.0062 2.1E-07 56.7 3.7 25 81-105 2-26 (196)
288 1nn5_A Similar to deoxythymidy 95.7 0.0053 1.8E-07 58.4 3.2 27 80-106 7-33 (215)
289 4b4t_J 26S protease regulatory 95.6 0.071 2.4E-06 56.4 12.0 24 83-106 183-206 (405)
290 1nks_A Adenylate kinase; therm 95.6 0.0054 1.9E-07 57.1 3.0 23 84-106 3-25 (194)
291 2orv_A Thymidine kinase; TP4A 95.6 0.052 1.8E-06 53.0 10.0 53 211-269 89-150 (234)
292 3vfd_A Spastin; ATPase, microt 95.6 0.079 2.7E-06 55.6 12.3 26 81-106 147-172 (389)
293 1ko7_A HPR kinase/phosphatase; 95.6 0.0094 3.2E-07 61.0 4.9 36 69-105 132-167 (314)
294 3k53_A Ferrous iron transport 95.6 0.0051 1.7E-07 61.4 2.8 23 84-106 5-27 (271)
295 2bwj_A Adenylate kinase 5; pho 95.5 0.0056 1.9E-07 57.5 2.5 27 80-106 10-36 (199)
296 2ged_A SR-beta, signal recogni 95.4 0.0067 2.3E-07 56.5 3.0 24 83-106 49-72 (193)
297 1z2a_A RAS-related protein RAB 95.4 0.0069 2.4E-07 54.6 2.9 23 84-106 7-29 (168)
298 3ihw_A Centg3; RAS, centaurin, 95.4 0.015 5.3E-07 54.0 5.3 22 84-105 22-43 (184)
299 2nzj_A GTP-binding protein REM 95.4 0.0079 2.7E-07 54.7 3.3 23 84-106 6-28 (175)
300 2erx_A GTP-binding protein DI- 95.4 0.0082 2.8E-07 54.2 3.3 22 84-105 5-26 (172)
301 2z0h_A DTMP kinase, thymidylat 95.4 0.0083 2.9E-07 56.1 3.4 23 84-106 2-24 (197)
302 1aky_A Adenylate kinase; ATP:A 95.4 0.0089 3E-07 57.5 3.6 26 81-106 3-28 (220)
303 3ake_A Cytidylate kinase; CMP 95.3 0.0082 2.8E-07 56.7 3.2 23 84-106 4-26 (208)
304 1jal_A YCHF protein; nucleotid 95.3 0.012 4.1E-07 61.6 4.6 39 82-120 2-48 (363)
305 2dyk_A GTP-binding protein; GT 95.3 0.0082 2.8E-07 53.7 3.0 23 84-106 3-25 (161)
306 1kao_A RAP2A; GTP-binding prot 95.3 0.0082 2.8E-07 53.8 3.0 23 84-106 5-27 (167)
307 3q72_A GTP-binding protein RAD 95.3 0.0066 2.3E-07 54.7 2.3 23 84-106 4-26 (166)
308 1u8z_A RAS-related protein RAL 95.3 0.0082 2.8E-07 53.9 2.9 23 84-106 6-28 (168)
309 3q85_A GTP-binding protein REM 95.3 0.009 3.1E-07 54.0 3.2 22 85-106 5-26 (169)
310 2vli_A Antibiotic resistance p 95.3 0.0066 2.3E-07 56.2 2.3 26 81-106 4-29 (183)
311 2ce2_X GTPase HRAS; signaling 95.2 0.0076 2.6E-07 53.9 2.6 23 84-106 5-27 (166)
312 1z0j_A RAB-22, RAS-related pro 95.2 0.0089 3E-07 53.9 3.0 23 84-106 8-30 (170)
313 1z08_A RAS-related protein RAB 95.2 0.009 3.1E-07 54.0 3.0 23 84-106 8-30 (170)
314 1ek0_A Protein (GTP-binding pr 95.2 0.0091 3.1E-07 53.8 2.9 23 84-106 5-27 (170)
315 1zd8_A GTP:AMP phosphotransfer 95.2 0.0093 3.2E-07 57.7 3.2 27 80-106 5-31 (227)
316 3tw8_B RAS-related protein RAB 95.2 0.0086 2.9E-07 54.6 2.7 23 84-106 11-33 (181)
317 3dm5_A SRP54, signal recogniti 95.2 0.16 5.3E-06 54.5 12.9 27 81-107 99-125 (443)
318 1c1y_A RAS-related protein RAP 95.2 0.0093 3.2E-07 53.6 2.9 22 84-105 5-26 (167)
319 1wms_A RAB-9, RAB9, RAS-relate 95.2 0.0095 3.3E-07 54.3 3.0 23 84-106 9-31 (177)
320 1ky3_A GTP-binding protein YPT 95.1 0.0096 3.3E-07 54.4 3.0 23 84-106 10-32 (182)
321 3fb4_A Adenylate kinase; psych 95.1 0.01 3.6E-07 56.6 3.4 23 84-106 2-24 (216)
322 4ag6_A VIRB4 ATPase, type IV s 95.1 0.0062 2.1E-07 64.2 1.9 45 212-256 262-309 (392)
323 2cdn_A Adenylate kinase; phosp 95.1 0.012 4E-07 55.7 3.7 26 81-106 19-44 (201)
324 1g16_A RAS-related protein SEC 95.1 0.0085 2.9E-07 54.1 2.6 23 84-106 5-27 (170)
325 2pbr_A DTMP kinase, thymidylat 95.1 0.011 3.7E-07 55.1 3.4 23 84-106 2-24 (195)
326 2lkc_A Translation initiation 95.1 0.012 4.3E-07 53.6 3.7 26 81-106 7-32 (178)
327 3b1v_A Ferrous iron uptake tra 95.1 0.015 5E-07 58.4 4.5 23 84-106 5-27 (272)
328 3iev_A GTP-binding protein ERA 95.1 0.0099 3.4E-07 60.7 3.3 24 83-106 11-34 (308)
329 3lxw_A GTPase IMAP family memb 95.1 0.01 3.5E-07 58.5 3.2 24 84-107 23-46 (247)
330 3cmw_A Protein RECA, recombina 95.1 0.12 4.1E-06 63.9 13.1 152 70-275 369-556 (1706)
331 1ukz_A Uridylate kinase; trans 95.1 0.012 4.1E-07 55.6 3.6 24 82-105 15-38 (203)
332 1svi_A GTP-binding protein YSX 95.1 0.0091 3.1E-07 55.5 2.6 24 83-106 24-47 (195)
333 1e6c_A Shikimate kinase; phosp 95.1 0.01 3.5E-07 54.4 2.9 24 83-106 3-26 (173)
334 1fzq_A ADP-ribosylation factor 95.0 0.0085 2.9E-07 55.5 2.3 23 83-105 17-39 (181)
335 2fn4_A P23, RAS-related protei 95.0 0.0096 3.3E-07 54.3 2.6 22 84-105 11-32 (181)
336 1zuh_A Shikimate kinase; alpha 95.0 0.013 4.4E-07 53.6 3.4 24 83-106 8-31 (168)
337 1zak_A Adenylate kinase; ATP:A 95.0 0.0096 3.3E-07 57.3 2.6 26 81-106 4-29 (222)
338 3pqc_A Probable GTP-binding pr 95.0 0.0099 3.4E-07 55.0 2.6 23 84-106 25-47 (195)
339 1r2q_A RAS-related protein RAB 95.0 0.011 3.8E-07 53.2 2.9 22 84-105 8-29 (170)
340 2pt5_A Shikimate kinase, SK; a 95.0 0.013 4.6E-07 53.3 3.4 23 84-106 2-24 (168)
341 3dl0_A Adenylate kinase; phosp 95.0 0.012 4.3E-07 56.1 3.4 23 84-106 2-24 (216)
342 3clv_A RAB5 protein, putative; 95.0 0.011 3.9E-07 54.8 3.0 23 84-106 9-31 (208)
343 3a4m_A L-seryl-tRNA(SEC) kinas 95.0 0.014 4.8E-07 57.9 3.8 25 81-105 3-27 (260)
344 4dsu_A GTPase KRAS, isoform 2B 95.0 0.012 4E-07 54.3 3.0 23 84-106 6-28 (189)
345 2hxs_A RAB-26, RAS-related pro 95.0 0.013 4.4E-07 53.5 3.3 23 84-106 8-30 (178)
346 1qf9_A UMP/CMP kinase, protein 94.9 0.013 4.4E-07 54.5 3.3 24 82-105 6-29 (194)
347 2iyv_A Shikimate kinase, SK; t 94.9 0.011 3.6E-07 55.0 2.7 24 83-106 3-26 (184)
348 1upt_A ARL1, ADP-ribosylation 94.9 0.012 4.1E-07 53.2 2.9 23 83-105 8-30 (171)
349 2cxx_A Probable GTP-binding pr 94.9 0.011 3.6E-07 54.7 2.6 22 85-106 4-25 (190)
350 2oil_A CATX-8, RAS-related pro 94.9 0.012 4.1E-07 54.8 3.0 23 84-106 27-49 (193)
351 3bc1_A RAS-related protein RAB 94.9 0.012 4.1E-07 54.3 2.9 23 84-106 13-35 (195)
352 1r8s_A ADP-ribosylation factor 94.9 0.012 4.3E-07 52.8 2.9 21 85-105 3-23 (164)
353 2qmh_A HPR kinase/phosphorylas 94.8 0.023 8E-07 54.2 4.8 36 69-105 22-57 (205)
354 3tlx_A Adenylate kinase 2; str 94.8 0.016 5.4E-07 57.0 3.7 25 81-105 28-52 (243)
355 3t1o_A Gliding protein MGLA; G 94.8 0.015 5.2E-07 53.8 3.3 25 84-108 16-40 (198)
356 2g6b_A RAS-related protein RAB 94.8 0.014 4.6E-07 53.4 2.9 23 84-106 12-34 (180)
357 1z0f_A RAB14, member RAS oncog 94.8 0.014 4.7E-07 53.1 2.9 23 84-106 17-39 (179)
358 2y8e_A RAB-protein 6, GH09086P 94.8 0.012 4.2E-07 53.5 2.6 22 84-105 16-37 (179)
359 2a9k_A RAS-related protein RAL 94.8 0.014 4.7E-07 53.5 2.9 23 84-106 20-42 (187)
360 3tqf_A HPR(Ser) kinase; transf 94.7 0.025 8.5E-07 52.8 4.6 35 69-104 4-38 (181)
361 3con_A GTPase NRAS; structural 94.7 0.014 4.9E-07 54.0 2.9 23 84-106 23-45 (190)
362 2grj_A Dephospho-COA kinase; T 94.7 0.016 5.6E-07 55.0 3.4 24 82-105 12-35 (192)
363 2efe_B Small GTP-binding prote 94.7 0.015 5E-07 53.2 3.0 23 84-106 14-36 (181)
364 1wf3_A GTP-binding protein; GT 94.7 0.016 5.4E-07 59.0 3.4 23 84-106 9-31 (301)
365 1uj2_A Uridine-cytidine kinase 94.7 0.016 5.4E-07 57.1 3.4 24 83-106 23-46 (252)
366 1moz_A ARL1, ADP-ribosylation 94.7 0.0088 3E-07 54.9 1.3 23 82-104 18-40 (183)
367 3t5d_A Septin-7; GTP-binding p 94.7 0.012 4.2E-07 58.8 2.4 23 84-106 10-32 (274)
368 2bov_A RAla, RAS-related prote 94.6 0.016 5.3E-07 54.4 2.9 23 84-106 16-38 (206)
369 1nrj_B SR-beta, signal recogni 94.6 0.015 5.3E-07 55.2 2.9 23 84-106 14-36 (218)
370 1vg8_A RAS-related protein RAB 94.6 0.016 5.5E-07 54.3 3.0 23 84-106 10-32 (207)
371 3a8t_A Adenylate isopentenyltr 94.6 0.023 7.7E-07 58.8 4.2 26 81-106 39-64 (339)
372 2gf9_A RAS-related protein RAB 94.6 0.016 5.5E-07 53.7 2.9 23 84-106 24-46 (189)
373 2bme_A RAB4A, RAS-related prot 94.6 0.014 4.9E-07 53.6 2.6 23 84-106 12-34 (186)
374 3iby_A Ferrous iron transport 94.6 0.015 5.2E-07 57.7 2.8 23 84-106 3-25 (256)
375 1jbk_A CLPB protein; beta barr 94.6 0.021 7E-07 52.4 3.6 26 81-106 42-67 (195)
376 1ksh_A ARF-like protein 2; sma 94.5 0.016 5.6E-07 53.4 2.9 26 81-106 17-42 (186)
377 3cbq_A GTP-binding protein REM 94.5 0.013 4.4E-07 55.2 2.2 22 84-105 25-46 (195)
378 3tkl_A RAS-related protein RAB 94.5 0.017 5.8E-07 53.6 2.9 23 84-106 18-40 (196)
379 1a7j_A Phosphoribulokinase; tr 94.5 0.0099 3.4E-07 60.3 1.3 26 81-106 4-29 (290)
380 3kkq_A RAS-related protein M-R 94.5 0.017 6E-07 53.0 2.9 23 84-106 20-42 (183)
381 2gf0_A GTP-binding protein DI- 94.5 0.016 5.4E-07 54.0 2.6 22 84-105 10-31 (199)
382 3cmu_A Protein RECA, recombina 94.5 0.22 7.5E-06 62.4 13.3 149 71-273 370-554 (2050)
383 1zbd_A Rabphilin-3A; G protein 94.5 0.019 6.6E-07 53.8 3.2 23 84-106 10-32 (203)
384 2dby_A GTP-binding protein; GD 94.4 0.016 5.6E-07 60.7 2.9 21 85-105 4-24 (368)
385 2xtp_A GTPase IMAP family memb 94.4 0.017 5.8E-07 56.9 2.9 23 84-106 24-46 (260)
386 2xb4_A Adenylate kinase; ATP-b 94.4 0.021 7E-07 55.2 3.4 22 84-105 2-23 (223)
387 2fg5_A RAB-22B, RAS-related pr 94.4 0.016 5.6E-07 54.0 2.6 23 84-106 25-47 (192)
388 1m7b_A RND3/RHOE small GTP-bin 94.4 0.016 5.5E-07 53.6 2.6 23 84-106 9-31 (184)
389 1mh1_A RAC1; GTP-binding, GTPa 94.4 0.018 6.3E-07 52.7 2.9 22 84-105 7-28 (186)
390 4fcw_A Chaperone protein CLPB; 94.4 0.021 7E-07 57.6 3.5 27 82-108 47-73 (311)
391 1z06_A RAS-related protein RAB 94.4 0.019 6.5E-07 53.3 3.0 22 84-105 22-43 (189)
392 2cjw_A GTP-binding protein GEM 94.4 0.019 6.6E-07 53.8 2.9 22 84-105 8-29 (192)
393 2f6r_A COA synthase, bifunctio 94.3 0.019 6.5E-07 57.8 3.0 22 82-103 75-96 (281)
394 3a1s_A Iron(II) transport prot 94.3 0.021 7E-07 56.8 3.3 23 84-106 7-29 (258)
395 2il1_A RAB12; G-protein, GDP, 94.3 0.018 6.2E-07 53.8 2.7 22 84-105 28-49 (192)
396 3umf_A Adenylate kinase; rossm 94.3 0.024 8.3E-07 54.9 3.6 28 79-106 26-53 (217)
397 3be4_A Adenylate kinase; malar 94.3 0.02 6.9E-07 54.9 3.0 25 82-106 5-29 (217)
398 2a5j_A RAS-related protein RAB 94.3 0.02 7E-07 53.2 3.0 23 84-106 23-45 (191)
399 2wsm_A Hydrogenase expression/ 94.3 0.019 6.6E-07 54.7 2.8 24 83-106 31-54 (221)
400 3bwd_D RAC-like GTP-binding pr 94.3 0.021 7.1E-07 52.2 2.9 22 84-105 10-31 (182)
401 3oes_A GTPase rhebl1; small GT 94.3 0.018 6.2E-07 54.1 2.6 23 84-106 26-48 (201)
402 4edh_A DTMP kinase, thymidylat 94.2 0.027 9.2E-07 54.3 3.8 28 80-107 4-31 (213)
403 1zd9_A ADP-ribosylation factor 94.2 0.021 7.3E-07 53.0 2.9 22 84-105 24-45 (188)
404 4dhe_A Probable GTP-binding pr 94.2 0.011 3.8E-07 56.4 1.0 24 83-106 30-53 (223)
405 1jwy_B Dynamin A GTPase domain 94.2 0.02 6.8E-07 58.0 2.9 23 84-106 26-48 (315)
406 2o52_A RAS-related protein RAB 94.2 0.021 7.1E-07 53.8 2.8 22 84-105 27-48 (200)
407 3dz8_A RAS-related protein RAB 94.2 0.019 6.5E-07 53.4 2.6 23 84-106 25-47 (191)
408 2atv_A RERG, RAS-like estrogen 94.2 0.022 7.5E-07 53.2 3.0 22 84-105 30-51 (196)
409 3i8s_A Ferrous iron transport 94.2 0.02 6.9E-07 57.3 2.9 23 84-106 5-27 (274)
410 3t5g_A GTP-binding protein RHE 94.2 0.019 6.6E-07 52.6 2.6 22 84-105 8-29 (181)
411 1zj6_A ADP-ribosylation factor 94.2 0.021 7.2E-07 52.8 2.8 23 83-105 17-39 (187)
412 1x3s_A RAS-related protein RAB 94.2 0.022 7.4E-07 52.7 2.9 23 84-106 17-39 (195)
413 2qu8_A Putative nucleolar GTP- 94.2 0.021 7.2E-07 55.0 2.9 23 83-105 30-52 (228)
414 3cph_A RAS-related protein SEC 94.2 0.022 7.4E-07 53.7 2.9 24 83-106 21-44 (213)
415 3reg_A RHO-like small GTPase; 94.2 0.022 7.6E-07 53.0 2.9 23 84-106 25-47 (194)
416 3v9p_A DTMP kinase, thymidylat 94.2 0.021 7.1E-07 55.8 2.8 29 79-107 22-50 (227)
417 2bcg_Y Protein YP2, GTP-bindin 94.2 0.019 6.7E-07 54.0 2.6 23 84-106 10-32 (206)
418 1ltq_A Polynucleotide kinase; 94.2 0.026 8.8E-07 56.9 3.6 22 83-104 3-24 (301)
419 2p5s_A RAS and EF-hand domain 94.2 0.022 7.7E-07 53.4 3.0 24 83-106 29-52 (199)
420 2f7s_A C25KG, RAS-related prot 94.2 0.025 8.5E-07 53.7 3.3 23 84-106 27-49 (217)
421 4bas_A ADP-ribosylation factor 94.2 0.022 7.4E-07 53.0 2.8 24 83-106 18-41 (199)
422 2h57_A ADP-ribosylation factor 94.1 0.016 5.6E-07 53.8 1.9 23 84-106 23-45 (190)
423 3exa_A TRNA delta(2)-isopenten 94.1 0.03 1E-06 57.3 4.0 25 82-106 3-27 (322)
424 2h17_A ADP-ribosylation factor 94.1 0.019 6.7E-07 52.8 2.4 22 84-105 23-44 (181)
425 1e4v_A Adenylate kinase; trans 94.1 0.023 8E-07 54.3 3.0 23 84-106 2-24 (214)
426 2ew1_A RAS-related protein RAB 94.1 0.021 7.1E-07 54.1 2.6 23 84-106 28-50 (201)
427 1ak2_A Adenylate kinase isoenz 94.0 0.029 1E-06 54.4 3.6 26 81-106 15-40 (233)
428 3llu_A RAS-related GTP-binding 94.0 0.025 8.7E-07 52.9 3.1 24 84-107 22-45 (196)
429 2iwr_A Centaurin gamma 1; ANK 94.0 0.019 6.5E-07 52.4 2.2 22 84-105 9-30 (178)
430 2q3h_A RAS homolog gene family 94.0 0.027 9.4E-07 52.6 3.2 23 84-106 22-44 (201)
431 3c5c_A RAS-like protein 12; GD 94.0 0.026 8.9E-07 52.5 3.0 23 84-106 23-45 (187)
432 2fv8_A H6, RHO-related GTP-bin 94.0 0.023 7.8E-07 53.7 2.6 23 84-106 27-49 (207)
433 3d3q_A TRNA delta(2)-isopenten 93.9 0.028 9.7E-07 58.1 3.4 24 83-106 8-31 (340)
434 2p65_A Hypothetical protein PF 93.9 0.026 8.8E-07 51.7 2.8 26 81-106 42-67 (187)
435 2j1l_A RHO-related GTP-binding 93.9 0.027 9.1E-07 53.7 2.9 22 84-105 36-57 (214)
436 2aka_B Dynamin-1; fusion prote 93.9 0.024 8.1E-07 56.9 2.6 23 84-106 28-50 (299)
437 2fh5_B SR-beta, signal recogni 93.9 0.027 9.4E-07 53.3 2.9 23 84-106 9-31 (214)
438 2fu5_C RAS-related protein RAB 93.9 0.018 6.3E-07 52.8 1.6 22 84-105 10-31 (183)
439 3lv8_A DTMP kinase, thymidylat 93.9 0.03 1E-06 55.0 3.2 27 81-107 26-52 (236)
440 3zvl_A Bifunctional polynucleo 93.8 0.028 9.5E-07 59.9 3.3 26 80-105 256-281 (416)
441 3euj_A Chromosome partition pr 93.8 0.082 2.8E-06 57.3 6.9 71 192-269 377-464 (483)
442 1gwn_A RHO-related GTP-binding 93.8 0.025 8.4E-07 53.8 2.6 23 84-106 30-52 (205)
443 2zts_A Putative uncharacterize 93.8 0.039 1.3E-06 53.4 4.0 60 210-269 133-206 (251)
444 3crm_A TRNA delta(2)-isopenten 93.8 0.029 1E-06 57.6 3.1 24 83-106 6-29 (323)
445 2h92_A Cytidylate kinase; ross 93.7 0.026 8.7E-07 54.0 2.4 25 82-106 3-27 (219)
446 2gco_A H9, RHO-related GTP-bin 93.7 0.027 9.3E-07 52.9 2.6 23 84-106 27-49 (201)
447 2b6h_A ADP-ribosylation factor 93.7 0.026 8.8E-07 52.8 2.3 23 83-105 30-52 (192)
448 3def_A T7I23.11 protein; chlor 93.6 0.03 1E-06 55.5 2.9 23 84-106 38-60 (262)
449 1sky_E F1-ATPase, F1-ATP synth 93.6 0.038 1.3E-06 59.6 3.8 35 71-106 141-175 (473)
450 4tmk_A Protein (thymidylate ki 93.6 0.036 1.2E-06 53.5 3.3 27 81-107 2-28 (213)
451 3ld9_A DTMP kinase, thymidylat 93.6 0.042 1.4E-06 53.4 3.8 28 80-107 19-46 (223)
452 2ocp_A DGK, deoxyguanosine kin 93.6 0.038 1.3E-06 53.9 3.4 25 82-106 2-26 (241)
453 2g3y_A GTP-binding protein GEM 93.6 0.036 1.2E-06 53.2 3.3 22 84-105 39-60 (211)
454 1njg_A DNA polymerase III subu 93.6 0.039 1.3E-06 52.4 3.5 42 212-255 126-167 (250)
455 1h65_A Chloroplast outer envel 93.6 0.031 1.1E-06 55.6 2.8 23 84-106 41-63 (270)
456 3tmk_A Thymidylate kinase; pho 93.5 0.037 1.3E-06 53.6 3.2 29 80-108 3-31 (216)
457 1p5z_B DCK, deoxycytidine kina 93.5 0.027 9.1E-07 55.8 2.3 27 80-106 22-48 (263)
458 3sr0_A Adenylate kinase; phosp 93.5 0.039 1.4E-06 52.9 3.4 23 84-106 2-24 (206)
459 2atx_A Small GTP binding prote 93.5 0.031 1.1E-06 51.9 2.6 22 84-105 20-41 (194)
460 4djt_A GTP-binding nuclear pro 93.5 0.018 6.1E-07 54.8 0.9 23 84-106 13-35 (218)
461 3cnl_A YLQF, putative uncharac 93.5 0.037 1.3E-06 55.1 3.2 25 83-107 100-124 (262)
462 2hf9_A Probable hydrogenase ni 93.4 0.036 1.2E-06 53.0 2.8 24 83-106 39-62 (226)
463 3cpj_B GTP-binding protein YPT 93.3 0.039 1.3E-06 52.8 3.0 23 84-106 15-37 (223)
464 3foz_A TRNA delta(2)-isopenten 93.3 0.05 1.7E-06 55.5 3.8 25 82-106 10-34 (316)
465 2hup_A RAS-related protein RAB 93.2 0.037 1.3E-06 52.1 2.6 23 84-106 31-53 (201)
466 2yc2_C IFT27, small RAB-relate 93.2 0.019 6.4E-07 53.8 0.5 22 84-105 22-43 (208)
467 2x77_A ADP-ribosylation factor 93.1 0.026 8.8E-07 52.2 1.3 22 83-104 23-44 (189)
468 3eph_A TRNA isopentenyltransfe 93.0 0.05 1.7E-06 57.5 3.4 25 82-106 2-26 (409)
469 3q3j_B RHO-related GTP-binding 93.0 0.046 1.6E-06 52.1 2.9 22 84-105 29-50 (214)
470 4gzl_A RAS-related C3 botulinu 93.0 0.042 1.4E-06 51.9 2.6 23 83-105 31-53 (204)
471 1sxj_D Activator 1 41 kDa subu 92.9 0.015 5.3E-07 59.6 -0.6 42 212-255 133-174 (353)
472 4dcu_A GTP-binding protein ENG 92.9 0.041 1.4E-06 59.3 2.7 52 198-253 88-140 (456)
473 2r62_A Cell division protease 92.9 0.014 4.8E-07 57.7 -0.9 29 76-106 40-68 (268)
474 2j0v_A RAC-like GTP-binding pr 92.8 0.045 1.5E-06 51.7 2.6 23 84-106 11-33 (212)
475 2vhj_A Ntpase P4, P4; non- hyd 92.6 0.073 2.5E-06 54.6 3.9 28 77-104 118-145 (331)
476 3n70_A Transport activator; si 92.6 0.065 2.2E-06 47.9 3.2 43 212-256 76-118 (145)
477 2orw_A Thymidine kinase; TMTK, 92.5 0.066 2.2E-06 50.2 3.2 53 212-269 76-137 (184)
478 1ypw_A Transitional endoplasmi 92.4 0.021 7.3E-07 66.1 -0.4 33 75-107 504-536 (806)
479 2chg_A Replication factor C sm 92.3 0.069 2.4E-06 50.0 3.1 41 212-254 102-142 (226)
480 3syl_A Protein CBBX; photosynt 92.2 0.071 2.4E-06 53.6 3.3 27 80-106 65-91 (309)
481 3r7w_A Gtpase1, GTP-binding pr 92.1 0.095 3.2E-06 53.2 4.1 24 82-105 3-26 (307)
482 3p32_A Probable GTPase RV1496/ 92.0 0.085 2.9E-06 54.8 3.6 26 81-106 78-103 (355)
483 1puj_A YLQF, conserved hypothe 92.0 0.084 2.9E-06 53.1 3.5 25 82-106 120-144 (282)
484 1d2n_A N-ethylmaleimide-sensit 92.0 0.086 2.9E-06 52.2 3.5 26 80-105 62-87 (272)
485 3gmt_A Adenylate kinase; ssgci 91.9 0.081 2.8E-06 51.6 3.2 23 84-106 10-32 (230)
486 2x2e_A Dynamin-1; nitration, h 91.9 0.054 1.8E-06 56.2 1.9 23 84-106 33-55 (353)
487 3th5_A RAS-related C3 botulinu 91.1 0.031 1.1E-06 52.5 0.0 21 84-104 32-52 (204)
488 1wxq_A GTP-binding protein; st 91.6 0.079 2.7E-06 56.1 2.9 22 85-106 3-24 (397)
489 3gj0_A GTP-binding nuclear pro 91.6 0.06 2E-06 51.3 1.8 22 84-105 17-39 (221)
490 3t15_A Ribulose bisphosphate c 91.6 0.085 2.9E-06 53.2 3.0 24 83-106 37-60 (293)
491 3l0i_B RAS-related protein RAB 91.5 0.021 7.1E-07 53.6 -1.5 23 84-106 35-57 (199)
492 2qgz_A Helicase loader, putati 91.5 0.1 3.5E-06 53.1 3.6 25 82-106 152-176 (308)
493 2hjg_A GTP-binding protein ENG 91.5 0.077 2.6E-06 56.7 2.7 22 84-105 5-26 (436)
494 3eie_A Vacuolar protein sortin 91.4 0.1 3.6E-06 53.2 3.5 27 80-106 49-75 (322)
495 3uk6_A RUVB-like 2; hexameric 91.3 0.096 3.3E-06 54.0 3.2 28 80-107 68-95 (368)
496 1ofh_A ATP-dependent HSL prote 91.2 0.099 3.4E-06 52.3 3.1 25 82-106 50-74 (310)
497 3geh_A MNME, tRNA modification 91.2 0.081 2.8E-06 57.1 2.5 25 81-105 223-247 (462)
498 3ec1_A YQEH GTPase; atnos1, at 91.0 0.095 3.2E-06 54.8 2.8 25 81-105 161-185 (369)
499 1f5n_A Interferon-induced guan 91.0 0.087 3E-06 58.5 2.5 34 70-106 29-62 (592)
500 1knx_A Probable HPR(Ser) kinas 91.0 0.21 7.1E-06 51.0 5.1 35 69-104 135-169 (312)
No 1
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=100.00 E-value=2e-49 Score=417.43 Aligned_cols=220 Identities=25% Similarity=0.366 Sum_probs=196.8
Q ss_pred eEEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCC----
Q 007554 51 RLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLS---- 126 (599)
Q Consensus 51 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~G~sGsGKSTLl~~L~G~~~~~~~~~G~I~~~g~~~~~~---- 126 (599)
.|+++||++.|..++ +.+.+|+|||+++++||+++|+||||||||||+|+|+|+++|+ +|+|.++|++....
T Consensus 24 mi~v~~ls~~y~~~~-~~~~aL~~vsl~i~~Gei~~IiGpnGaGKSTLlr~i~GL~~p~---~G~I~i~G~~i~~~~~~~ 99 (366)
T 3tui_C 24 MIKLSNITKVFHQGT-RTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPT---EGSVLVDGQELTTLSESE 99 (366)
T ss_dssp CEEEEEEEEEEECSS-SEEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCS---EEEEEETTEECSSCCHHH
T ss_pred eEEEEeEEEEeCCCC-CCeEEEEeeEEEEcCCCEEEEEcCCCchHHHHHHHHhcCCCCC---ceEEEECCEECCcCCHHH
Confidence 599999999996322 2357999999999999999999999999999999999999985 99999999975321
Q ss_pred ----cCeEEEEcCCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHH
Q 007554 127 ----FGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRR 202 (599)
Q Consensus 127 ----~~~~~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSGGerqR 202 (599)
++.+|||+|++.+++.+||+||+.++...+ ..++++.+++++++++.+||.+..++. +.+||||||||
T Consensus 100 ~~~~r~~Ig~v~Q~~~l~~~~TV~env~~~~~~~---~~~~~~~~~~v~~lL~~vgL~~~~~~~-----~~~LSGGqkQR 171 (366)
T 3tui_C 100 LTKARRQIGMIFQHFNLLSSRTVFGNVALPLELD---NTPKDEVKRRVTELLSLVGLGDKHDSY-----PSNLSGGQKQR 171 (366)
T ss_dssp HHHHHTTEEEECSSCCCCTTSCHHHHHHHHHHHS---CCCHHHHHHHHHHHHHHHTCGGGTTCC-----TTTSCHHHHHH
T ss_pred HHHHhCcEEEEeCCCccCCCCCHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCCchHhcCC-----hhhCCHHHHHH
Confidence 357999999999999999999999987653 245677778899999999999887774 46799999999
Q ss_pred HHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCCchHHHhccCeEEEEeCCeEEEecChhh
Q 007554 203 VSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSR-DGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSA 281 (599)
Q Consensus 203 v~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~L~~l~~-~g~tvi~~~H~p~~~i~~~~D~v~~L~~G~iv~~G~~~~ 281 (599)
|+|||||+.+|++|||||||||||+.++..+++.|+++++ .|.|||++||++ +.+.++||+|++|++|++++.|++++
T Consensus 172 VaIArAL~~~P~lLLlDEPTs~LD~~~~~~i~~lL~~l~~~~g~Tii~vTHdl-~~~~~~aDrv~vl~~G~iv~~g~~~e 250 (366)
T 3tui_C 172 VAIARALASNPKVLLCDQATSALDPATTRSILELLKDINRRLGLTILLITHEM-DVVKRICDCVAVISNGELIEQDTVSE 250 (366)
T ss_dssp HHHHHHTTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHSCCEEEEEESCH-HHHHHHCSEEEEEETTEEEECCBHHH
T ss_pred HHHHHHHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEecCH-HHHHHhCCEEEEEECCEEEEEcCHHH
Confidence 9999999999999999999999999999999999999976 599999999995 67889999999999999999999987
Q ss_pred HH
Q 007554 282 AF 283 (599)
Q Consensus 282 ~~ 283 (599)
+.
T Consensus 251 v~ 252 (366)
T 3tui_C 251 VF 252 (366)
T ss_dssp HH
T ss_pred HH
Confidence 65
No 2
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=100.00 E-value=1.8e-49 Score=417.66 Aligned_cols=217 Identities=24% Similarity=0.388 Sum_probs=193.7
Q ss_pred eEEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeC----C--
Q 007554 51 RLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKT----K-- 124 (599)
Q Consensus 51 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~G~sGsGKSTLl~~L~G~~~~~~~~~G~I~~~g~~~----~-- 124 (599)
.|+++||+++| +++.+|+|||+++++||+++|+||||||||||||+|+|+.+|+ +|+|.++|++. .
T Consensus 4 ~l~i~~ls~~y-----~~~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~---~G~I~i~G~~i~~~~~~~ 75 (359)
T 3fvq_A 4 ALHIGHLSKSF-----QNTPVLNDISLSLDPGEILFIIGASGCGKTTLLRCLAGFEQPD---SGEISLSGKTIFSKNTNL 75 (359)
T ss_dssp CEEEEEEEEEE-----TTEEEEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTSSCCS---EEEEEETTEEEESSSCBC
T ss_pred EEEEEeEEEEE-----CCEEEEEeeEEEEcCCCEEEEECCCCchHHHHHHHHhcCCCCC---CcEEEECCEECccccccc
Confidence 48999999999 4578999999999999999999999999999999999999986 99999999874 1
Q ss_pred -CCcCeEEEEcCCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHHH
Q 007554 125 -LSFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRV 203 (599)
Q Consensus 125 -~~~~~~~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSGGerqRv 203 (599)
...+.+|||+|+..+||.+||+||+.|+.+.+ ...+++.+++++++++.+||.+..|+.+ .+|||||||||
T Consensus 76 ~~~~r~ig~vfQ~~~l~p~ltV~eni~~~l~~~---~~~~~~~~~~v~~~l~~~gL~~~~~r~~-----~~LSGGq~QRV 147 (359)
T 3fvq_A 76 PVRERRLGYLVQEGVLFPHLTVYRNIAYGLGNG---KGRTAQERQRIEAMLELTGISELAGRYP-----HELSGGQQQRA 147 (359)
T ss_dssp CGGGSCCEEECTTCCCCTTSCHHHHHHTTSTTS---SCCSHHHHHHHHHHHHHHTCGGGTTSCG-----GGSCHHHHHHH
T ss_pred chhhCCEEEEeCCCcCCCCCCHHHHHHHHHHHc---CCChHHHHHHHHHHHHHcCCchHhcCCh-----hhCCHHHHHHH
Confidence 12357999999999999999999999986543 2345666788999999999998888754 57999999999
Q ss_pred HHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHH-hCCCEEEEEecCCchHHHhccCeEEEEeCCeEEEecChhhH
Q 007554 204 SIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLS-RDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAA 282 (599)
Q Consensus 204 ~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~L~~l~-~~g~tvi~~~H~p~~~i~~~~D~v~~L~~G~iv~~G~~~~~ 282 (599)
+|||||+.+|++|||||||||||+..+.++.+.|+++. +.|+|+|++|||. +++..+||||++|++|+++..|+++++
T Consensus 148 alArAL~~~P~lLLLDEPts~LD~~~r~~l~~~l~~~~~~~g~tvi~vTHd~-~ea~~~aDri~vl~~G~i~~~g~~~el 226 (359)
T 3fvq_A 148 ALARALAPDPELILLDEPFSALDEQLRRQIREDMIAALRANGKSAVFVSHDR-EEALQYADRIAVMKQGRILQTASPHEL 226 (359)
T ss_dssp HHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHTTCEEEEECCCH-HHHHHHCSEEEEEETTEEEEEECHHHH
T ss_pred HHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCH-HHHHHHCCEEEEEECCEEEEEeCHHHH
Confidence 99999999999999999999999999999999888875 4699999999995 689999999999999999999999887
Q ss_pred HH
Q 007554 283 FE 284 (599)
Q Consensus 283 ~~ 284 (599)
..
T Consensus 227 ~~ 228 (359)
T 3fvq_A 227 YR 228 (359)
T ss_dssp HH
T ss_pred Hh
Confidence 53
No 3
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=100.00 E-value=3e-49 Score=418.59 Aligned_cols=217 Identities=25% Similarity=0.372 Sum_probs=197.0
Q ss_pred eEEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC---Cc
Q 007554 51 RLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL---SF 127 (599)
Q Consensus 51 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~G~sGsGKSTLl~~L~G~~~~~~~~~G~I~~~g~~~~~---~~ 127 (599)
.|+++||+++| +++.+|+|||+++++||+++|+||||||||||||+|+|+++|+ +|+|.++|++... ..
T Consensus 3 ~l~~~~l~~~y-----g~~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~---~G~I~i~G~~~~~~~~~~ 74 (381)
T 3rlf_A 3 SVQLQNVTKAW-----GEVVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETIT---SGDLFIGEKRMNDTPPAE 74 (381)
T ss_dssp CEEEEEEEEEE-----TTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCS---EEEEEETTEECTTCCGGG
T ss_pred EEEEEeEEEEE-----CCEEEEeeeEEEECCCCEEEEEcCCCchHHHHHHHHHcCCCCC---CeEEEECCEECCCCCHHH
Confidence 38999999999 4578999999999999999999999999999999999999986 9999999997532 23
Q ss_pred CeEEEEcCCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHHHHHHH
Q 007554 128 GTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIAL 207 (599)
Q Consensus 128 ~~~~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSGGerqRv~ia~ 207 (599)
+.+|||+|++.+||.+||+||+.|+.+.+ ..++++.+++++++++.++|.+..++. +++|||||||||+|||
T Consensus 75 r~ig~VfQ~~~l~p~ltV~eni~~~~~~~---~~~~~~~~~~v~~~l~~~~L~~~~~r~-----p~~LSGGqrQRVaiAr 146 (381)
T 3rlf_A 75 RGVGMVFQSYALYPHLSVAENMSFGLKLA---GAKKEVINQRVNQVAEVLQLAHLLDRK-----PKALSGGQRQRVAIGR 146 (381)
T ss_dssp SCEEEECTTCCCCTTSCHHHHHTHHHHHT---TCCHHHHHHHHHHHHHHTTCGGGTTCC-----GGGSCHHHHHHHHHHH
T ss_pred CCEEEEecCCcCCCCCCHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCchhhcCC-----hhHCCHHHHHHHHHHH
Confidence 67999999999999999999999987654 345677788999999999999888775 4579999999999999
Q ss_pred HHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCchHHHhccCeEEEEeCCeEEEecChhhHHH
Q 007554 208 EILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRD-GRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAFE 284 (599)
Q Consensus 208 aL~~~p~illlDEPtsgLD~~~~~~i~~~L~~l~~~-g~tvi~~~H~p~~~i~~~~D~v~~L~~G~iv~~G~~~~~~~ 284 (599)
||+.+|++||||||||+||+..+.++.+.|+++.++ |.|+|++|||+ .++..+||+|++|++|+++..|+++++..
T Consensus 147 AL~~~P~lLLLDEPts~LD~~~~~~l~~~l~~l~~~~g~tii~vTHd~-~ea~~~aDri~vl~~G~i~~~g~~~~l~~ 223 (381)
T 3rlf_A 147 TLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQ-VEAMTLADKIVVLDAGRVAQVGKPLELYH 223 (381)
T ss_dssp HHHHCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHCCEEEEECSCH-HHHHHHCSEEEEEETTEEEEEECHHHHHH
T ss_pred HHHcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHhCCCEEEEEECCH-HHHHHhCCEEEEEECCEEEEEeCHHHHHh
Confidence 999999999999999999999999999999999764 99999999995 68999999999999999999999998753
No 4
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=100.00 E-value=7.9e-49 Score=392.33 Aligned_cols=220 Identities=25% Similarity=0.356 Sum_probs=188.9
Q ss_pred EEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCC-----
Q 007554 52 LTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLS----- 126 (599)
Q Consensus 52 l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~G~sGsGKSTLl~~L~G~~~~~~~~~G~I~~~g~~~~~~----- 126 (599)
|+++||+++|..+. ..+.+|+|+|+++++||+++|+||||||||||+|+|+|+++|+ +|+|.++|++....
T Consensus 2 l~~~~l~~~y~~~~-~~~~~L~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~p~---~G~I~~~g~~~~~~~~~~~ 77 (235)
T 3tif_A 2 VKLKNVTKTYKMGE-EIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPT---EGEVYIDNIKTNDLDDDEL 77 (235)
T ss_dssp EEEEEEEEEEEETT-EEEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCS---EEEEEETTEECTTCCHHHH
T ss_pred EEEEEEEEEeCCCC-cceeeEEeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCC---ceEEEECCEEcccCCHHHH
Confidence 78999999995321 1356999999999999999999999999999999999999985 99999999875321
Q ss_pred ----cCeEEEEcCCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccc-cccccCcccCCCCHHHHH
Q 007554 127 ----FGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCA-DTVIGNWHLRGISGGERR 201 (599)
Q Consensus 127 ----~~~~~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~l~L~~~~-~~~vg~~~~~~LSGGerq 201 (599)
++.+|||+|++.+++.+||+||+.++...+........+..+++.++++.++|.+.. ++ .+.+|||||||
T Consensus 78 ~~~~~~~i~~v~Q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~~LSgGq~Q 152 (235)
T 3tif_A 78 TKIRRDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGEERRKRALECLKMAELEERFANH-----KPNQLSGGQQQ 152 (235)
T ss_dssp HHHHHHHEEEECTTCCCCTTSCHHHHHHHHHHTCSSSCCCHHHHHHHHHHHHHHTTCCGGGTTC-----CGGGSCHHHHH
T ss_pred HHHhhccEEEEecCCccCCCCcHHHHHHHHHHhhhccCCCHHHHHHHHHHHHHHCCCChhhhhC-----ChhhCCHHHHH
Confidence 135999999999999999999999986544222344566677889999999998753 65 44679999999
Q ss_pred HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCchHHHhccCeEEEEeCCeEEEecChh
Q 007554 202 RVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRD-GRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETS 280 (599)
Q Consensus 202 Rv~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~L~~l~~~-g~tvi~~~H~p~~~i~~~~D~v~~L~~G~iv~~G~~~ 280 (599)
||+|||||+.+|++|||||||+|||+.++..+++.|++++++ |+|||++||++ + +.++||++++|++|+++..|+++
T Consensus 153 Rv~iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~g~tvi~vtHd~-~-~~~~~d~i~~l~~G~i~~~~~~~ 230 (235)
T 3tif_A 153 RVAIARALANNPPIILADQPTWALDSKTGEKIMQLLKKLNEEDGKTVVVVTHDI-N-VARFGERIIYLKDGEVEREEKLR 230 (235)
T ss_dssp HHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHCCEEEEECSCH-H-HHTTSSEEEEEETTEEEEEEECC
T ss_pred HHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEcCCH-H-HHHhCCEEEEEECCEEEEEcChh
Confidence 999999999999999999999999999999999999999764 99999999996 3 46899999999999999999877
Q ss_pred hH
Q 007554 281 AA 282 (599)
Q Consensus 281 ~~ 282 (599)
+.
T Consensus 231 ~~ 232 (235)
T 3tif_A 231 GF 232 (235)
T ss_dssp --
T ss_pred hh
Confidence 63
No 5
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=100.00 E-value=1.2e-48 Score=396.78 Aligned_cols=216 Identities=29% Similarity=0.436 Sum_probs=191.1
Q ss_pred eEEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCC---CC-
Q 007554 51 RLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTK---LS- 126 (599)
Q Consensus 51 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~G~sGsGKSTLl~~L~G~~~~~~~~~G~I~~~g~~~~---~~- 126 (599)
.|+++||++.| +++.+|+|||+++++||+++|+||||||||||+|+|+|+++|+ +|+|.++|++.. ..
T Consensus 24 ~l~i~~l~~~y-----~~~~vL~~vsl~i~~Gei~~liG~NGsGKSTLlk~l~Gl~~p~---~G~I~~~g~~i~~~~~~~ 95 (263)
T 2olj_A 24 MIDVHQLKKSF-----GSLEVLKGINVHIREGEVVVVIGPSGSGKSTFLRCLNLLEDFD---EGEIIIDGINLKAKDTNL 95 (263)
T ss_dssp SEEEEEEEEEE-----TTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCS---EEEEEETTEESSSTTCCH
T ss_pred eEEEEeEEEEE-----CCEEEEEeeEEEEcCCCEEEEEcCCCCcHHHHHHHHHcCCCCC---CcEEEECCEECCCccccH
Confidence 49999999998 3467999999999999999999999999999999999999885 999999998753 11
Q ss_pred ---cCeEEEEcCCCCCCCCCCHHHHHHHHh-hccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHH
Q 007554 127 ---FGTAAYVTQDDNLIGTLTVRETISYSA-RLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRR 202 (599)
Q Consensus 127 ---~~~~~yv~Q~~~l~~~lTV~e~l~~~~-~~~~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSGGerqR 202 (599)
++.++||+|++.+++.+||+||+.++. ... .....+.+++++++++.+||.+..++.+ .+||||||||
T Consensus 96 ~~~~~~i~~v~Q~~~l~~~~tv~e~l~~~~~~~~---~~~~~~~~~~~~~~l~~~~L~~~~~~~~-----~~LSgGqkQR 167 (263)
T 2olj_A 96 NKVREEVGMVFQRFNLFPHMTVLNNITLAPMKVR---KWPREKAEAKAMELLDKVGLKDKAHAYP-----DSLSGGQAQR 167 (263)
T ss_dssp HHHHHHEEEECSSCCCCTTSCHHHHHHHHHHHTS---CCCHHHHHHHHHHHHHHTTCGGGTTSCG-----GGSCHHHHHH
T ss_pred HHHhCcEEEEeCCCcCCCCCCHHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHCCCchHhcCCh-----hhCCHHHHHH
Confidence 246999999999999999999999964 322 2234455678899999999988877754 5799999999
Q ss_pred HHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhccCeEEEEeCCeEEEecChhhH
Q 007554 203 VSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAA 282 (599)
Q Consensus 203 v~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~p~~~i~~~~D~v~~L~~G~iv~~G~~~~~ 282 (599)
|+|||||+.+|++|||||||+|||+.++..+.+.|++++++|+|||++||++ +.+.++||++++|++|++++.|+++++
T Consensus 168 v~lAraL~~~p~lllLDEPts~LD~~~~~~~~~~l~~l~~~g~tvi~vtHd~-~~~~~~~d~v~~l~~G~i~~~g~~~~~ 246 (263)
T 2olj_A 168 VAIARALAMEPKIMLFDEPTSALDPEMVGEVLSVMKQLANEGMTMVVVTHEM-GFAREVGDRVLFMDGGYIIEEGKPEDL 246 (263)
T ss_dssp HHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCEEEEECSCH-HHHHHHCSEEEEEETTEEEEEECHHHH
T ss_pred HHHHHHHHCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEcCCH-HHHHHhCCEEEEEECCEEEEECCHHHH
Confidence 9999999999999999999999999999999999999987799999999995 678889999999999999999998876
Q ss_pred H
Q 007554 283 F 283 (599)
Q Consensus 283 ~ 283 (599)
.
T Consensus 247 ~ 247 (263)
T 2olj_A 247 F 247 (263)
T ss_dssp H
T ss_pred H
Confidence 4
No 6
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=100.00 E-value=9e-49 Score=400.13 Aligned_cols=218 Identities=27% Similarity=0.420 Sum_probs=191.3
Q ss_pred eEEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC-----
Q 007554 51 RLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL----- 125 (599)
Q Consensus 51 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~G~sGsGKSTLl~~L~G~~~~~~~~~G~I~~~g~~~~~----- 125 (599)
.|+++||+++|. +.+.+|+|||+++++||+++|+||||||||||+|+|+|+++|+ +|+|.++|++...
T Consensus 7 ~l~i~~ls~~y~----~~~~~L~~isl~i~~Ge~~~iiGpnGsGKSTLl~~l~Gl~~p~---~G~I~~~G~~i~~~~~~~ 79 (275)
T 3gfo_A 7 ILKVEELNYNYS----DGTHALKGINMNIKRGEVTAILGGNGVGKSTLFQNFNGILKPS---SGRILFDNKPIDYSRKGI 79 (275)
T ss_dssp EEEEEEEEEECT----TSCEEEEEEEEEEETTSEEEEECCTTSSHHHHHHHHTTSSCCS---EEEEEETTEECCCSHHHH
T ss_pred EEEEEEEEEEEC----CCCeEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCC---CeEEEECCEECCcccccH
Confidence 589999999883 2345999999999999999999999999999999999999885 9999999997631
Q ss_pred --CcCeEEEEcCCCC-CCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHH
Q 007554 126 --SFGTAAYVTQDDN-LIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRR 202 (599)
Q Consensus 126 --~~~~~~yv~Q~~~-l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSGGerqR 202 (599)
.++.+|||+|++. .+..+||+||+.|+.... ..+.++.+++++++++.+||.+..++.+ .+||||||||
T Consensus 80 ~~~~~~ig~v~Q~~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~L~~~~~~~~-----~~LSgGqkQR 151 (275)
T 3gfo_A 80 MKLRESIGIVFQDPDNQLFSASVYQDVSFGAVNM---KLPEDEIRKRVDNALKRTGIEHLKDKPT-----HCLSFGQKKR 151 (275)
T ss_dssp HHHHHSEEEECSSGGGTCCSSBHHHHHHHHHHTS---CCCHHHHHHHHHHHHHHTTCGGGTTSBG-----GGSCHHHHHH
T ss_pred HHHhCcEEEEEcCcccccccCcHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCchhhcCCc-----ccCCHHHHHH
Confidence 1356999999962 344789999999987543 3456677788999999999998887754 5799999999
Q ss_pred HHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHH-hCCCEEEEEecCCchHHHhccCeEEEEeCCeEEEecChhh
Q 007554 203 VSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLS-RDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSA 281 (599)
Q Consensus 203 v~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~L~~l~-~~g~tvi~~~H~p~~~i~~~~D~v~~L~~G~iv~~G~~~~ 281 (599)
|+|||||+.+|++|||||||+|||+.++..+++.|++++ ++|+|||++||++ +.+.++||+|++|++|++++.|++++
T Consensus 152 v~iAraL~~~P~lLlLDEPts~LD~~~~~~i~~~l~~l~~~~g~tvi~vtHdl-~~~~~~~drv~~l~~G~i~~~g~~~~ 230 (275)
T 3gfo_A 152 VAIAGVLVMEPKVLILDEPTAGLDPMGVSEIMKLLVEMQKELGITIIIATHDI-DIVPLYCDNVFVMKEGRVILQGNPKE 230 (275)
T ss_dssp HHHHHHHTTCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHHHCCEEEEEESCC-SSGGGGCSEEEEEETTEEEEEECHHH
T ss_pred HHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHHhhCCCEEEEEecCH-HHHHHhCCEEEEEECCEEEEECCHHH
Confidence 999999999999999999999999999999999999997 5699999999997 46788999999999999999999988
Q ss_pred HHH
Q 007554 282 AFE 284 (599)
Q Consensus 282 ~~~ 284 (599)
+..
T Consensus 231 ~~~ 233 (275)
T 3gfo_A 231 VFA 233 (275)
T ss_dssp HTH
T ss_pred Hhc
Confidence 654
No 7
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=100.00 E-value=1.1e-48 Score=397.40 Aligned_cols=216 Identities=28% Similarity=0.402 Sum_probs=190.9
Q ss_pred eEEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC-----
Q 007554 51 RLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL----- 125 (599)
Q Consensus 51 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~G~sGsGKSTLl~~L~G~~~~~~~~~G~I~~~g~~~~~----- 125 (599)
.|+++||++.| +++.+|+|||+++++||+++|+||||||||||+|+|+|+++|+ +|+|.++|++...
T Consensus 6 ~l~i~~l~~~y-----~~~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~p~---~G~i~~~g~~~~~~~~~~ 77 (262)
T 1b0u_A 6 KLHVIDLHKRY-----GGHEVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPS---EGAIIVNGQNINLVRDKD 77 (262)
T ss_dssp CEEEEEEEEEE-----TTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCS---EEEEEETTEECCEEECTT
T ss_pred eEEEeeEEEEE-----CCEEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CcEEEECCEEcccccccc
Confidence 38999999998 3467999999999999999999999999999999999999885 9999999987531
Q ss_pred -------------CcCeEEEEcCCCCCCCCCCHHHHHHHHh-hccCCCCCCHHHHHHHHHHHHHHcCCCcc-ccccccCc
Q 007554 126 -------------SFGTAAYVTQDDNLIGTLTVRETISYSA-RLRLPDKMPWSEKRTLVERTIIEMGLQDC-ADTVIGNW 190 (599)
Q Consensus 126 -------------~~~~~~yv~Q~~~l~~~lTV~e~l~~~~-~~~~~~~~~~~~~~~~v~~~l~~l~L~~~-~~~~vg~~ 190 (599)
.++.++||+|++.+++.+||+||+.++. ..+ ..+..+.+++++++++.+||.+. .++.+
T Consensus 78 ~~~~~~~~~~~~~~~~~i~~v~Q~~~l~~~ltv~e~l~~~~~~~~---~~~~~~~~~~~~~~l~~~~L~~~~~~~~~--- 151 (262)
T 1b0u_A 78 GQLKVADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVL---GLSKHDARERALKYLAKVGIDERAQGKYP--- 151 (262)
T ss_dssp SSEEESCHHHHHHHHHHEEEECSSCCCCTTSCHHHHHHHHHHHTT---CCCHHHHHHHHHHHHHHTTCCHHHHTSCG---
T ss_pred ccccccChhhHHHHhcceEEEecCcccCCCCcHHHHHHhhHHHhc---CCCHHHHHHHHHHHHHHcCCCchhhcCCc---
Confidence 1246999999999999999999999964 322 23345556788999999999887 77754
Q ss_pred ccCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhccCeEEEEeC
Q 007554 191 HLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSG 270 (599)
Q Consensus 191 ~~~~LSGGerqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~p~~~i~~~~D~v~~L~~ 270 (599)
.+|||||||||+|||||+.+|++|||||||+|||+.++..+.+.|++++++|+|||++||++ +.+.++||++++|++
T Consensus 152 --~~LSgGq~qRv~lAraL~~~p~lllLDEPts~LD~~~~~~~~~~l~~l~~~g~tvi~vtHd~-~~~~~~~d~v~~l~~ 228 (262)
T 1b0u_A 152 --VHLSGGQQQRVSIARALAMEPDVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEM-GFARHVSSHVIFLHQ 228 (262)
T ss_dssp --GGSCHHHHHHHHHHHHHHTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCCEEEECSCH-HHHHHHCSEEEEEET
T ss_pred --ccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCH-HHHHHhCCEEEEEEC
Confidence 57999999999999999999999999999999999999999999999987799999999995 678889999999999
Q ss_pred CeEEEecChhhHH
Q 007554 271 GKTVYFGETSAAF 283 (599)
Q Consensus 271 G~iv~~G~~~~~~ 283 (599)
|++++.|+++++.
T Consensus 229 G~i~~~g~~~~~~ 241 (262)
T 1b0u_A 229 GKIEEEGDPEQVF 241 (262)
T ss_dssp TEEEEEECHHHHH
T ss_pred CEEEEeCCHHHHH
Confidence 9999999987764
No 8
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=100.00 E-value=1.6e-48 Score=387.37 Aligned_cols=211 Identities=29% Similarity=0.367 Sum_probs=186.6
Q ss_pred eEEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCC----
Q 007554 51 RLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLS---- 126 (599)
Q Consensus 51 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~G~sGsGKSTLl~~L~G~~~~~~~~~G~I~~~g~~~~~~---- 126 (599)
.|+++||++.| +++.+|+|+|+++++||+++|+||||||||||+|+|+|+++|+ +|+|.++|++....
T Consensus 4 ~l~~~~l~~~y-----~~~~~l~~vsl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~~~~~ 75 (224)
T 2pcj_A 4 ILRAENIKKVI-----RGYEILKGISLSVKKGEFVSIIGASGSGKSTLLYILGLLDAPT---EGKVFLEGKEVDYTNEKE 75 (224)
T ss_dssp EEEEEEEEEEE-----TTEEEEEEEEEEEETTCEEEEEECTTSCHHHHHHHHTTSSCCS---EEEEEETTEECCSSCHHH
T ss_pred EEEEEeEEEEE-----CCEeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC---ceEEEECCEECCCCCHHH
Confidence 48999999998 3467999999999999999999999999999999999999885 99999999875321
Q ss_pred -----cCeEEEEcCCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHH
Q 007554 127 -----FGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERR 201 (599)
Q Consensus 127 -----~~~~~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSGGerq 201 (599)
.+.++||+|++.+++.+||+||+.++...+ .....+.+++++++++.+||.+..++.+ ++|||||||
T Consensus 76 ~~~~~~~~i~~v~q~~~l~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LSgGq~q 147 (224)
T 2pcj_A 76 LSLLRNRKLGFVFQFHYLIPELTALENVIVPMLKM---GKPKKEAKERGEYLLSELGLGDKLSRKP-----YELSGGEQQ 147 (224)
T ss_dssp HHHHHHHHEEEECSSCCCCTTSCHHHHHHHHHHHT---TCCHHHHHHHHHHHHHHTTCTTCTTCCG-----GGSCHHHHH
T ss_pred HHHHHhCcEEEEecCcccCCCCCHHHHHHhHHHHc---CCCHHHHHHHHHHHHHHcCCchhhhCCh-----hhCCHHHHH
Confidence 146999999999999999999999976543 2234455677899999999998877754 579999999
Q ss_pred HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhccCeEEEEeCCeEEEecCh
Q 007554 202 RVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGET 279 (599)
Q Consensus 202 Rv~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~p~~~i~~~~D~v~~L~~G~iv~~G~~ 279 (599)
||+|||||+.+|++|||||||+|||+.++..+.+.|++++++|+|||++|||+ +.+ ++||++++|++|++++.|+.
T Consensus 148 rv~laral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~l~~~g~tvi~vtHd~-~~~-~~~d~v~~l~~G~i~~~g~~ 223 (224)
T 2pcj_A 148 RVAIARALANEPILLFADEPTGNLDSANTKRVMDIFLKINEGGTSIVMVTHER-ELA-ELTHRTLEMKDGKVVGEITR 223 (224)
T ss_dssp HHHHHHHTTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCH-HHH-TTSSEEEEEETTEEEEEEEC
T ss_pred HHHHHHHHHcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEcCCH-HHH-HhCCEEEEEECCEEEEEeee
Confidence 99999999999999999999999999999999999999987799999999995 455 89999999999999998863
No 9
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=100.00 E-value=3.9e-48 Score=391.74 Aligned_cols=217 Identities=29% Similarity=0.396 Sum_probs=192.0
Q ss_pred eEEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCC----
Q 007554 51 RLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLS---- 126 (599)
Q Consensus 51 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~G~sGsGKSTLl~~L~G~~~~~~~~~G~I~~~g~~~~~~---- 126 (599)
.|+++||++.| +++.+|+|+|+++++||+++|+||||||||||||+|+|+++|+ +|+|.++|++....
T Consensus 15 ~l~i~~l~~~y-----~~~~vl~~vsl~i~~Gei~~l~G~NGsGKSTLlk~l~Gl~~p~---~G~I~~~g~~~~~~~~~~ 86 (256)
T 1vpl_A 15 AVVVKDLRKRI-----GKKEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPS---SGIVTVFGKNVVEEPHEV 86 (256)
T ss_dssp CEEEEEEEEEE-----TTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCS---EEEEEETTEETTTCHHHH
T ss_pred eEEEEEEEEEE-----CCEEEEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCC---ceEEEECCEECCccHHHH
Confidence 59999999998 3467999999999999999999999999999999999999885 99999999875321
Q ss_pred cCeEEEEcCCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHHHHHH
Q 007554 127 FGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIA 206 (599)
Q Consensus 127 ~~~~~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSGGerqRv~ia 206 (599)
++.++||+|++.+++.+||+||+.+..... .....+.+++++++++.+||.+..++.+ ++|||||||||+||
T Consensus 87 ~~~i~~v~q~~~l~~~ltv~enl~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~~~~-----~~LSgGq~qRv~lA 158 (256)
T 1vpl_A 87 RKLISYLPEEAGAYRNMQGIEYLRFVAGFY---ASSSSEIEEMVERATEIAGLGEKIKDRV-----STYSKGMVRKLLIA 158 (256)
T ss_dssp HTTEEEECTTCCCCTTSBHHHHHHHHHHHH---CCCHHHHHHHHHHHHHHHCCGGGGGSBG-----GGCCHHHHHHHHHH
T ss_pred hhcEEEEcCCCCCCCCCcHHHHHHHHHHHc---CCChHHHHHHHHHHHHHCCCchHhcCCh-----hhCCHHHHHHHHHH
Confidence 356999999999999999999999976443 1234444567889999999998877754 57999999999999
Q ss_pred HHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhccCeEEEEeCCeEEEecChhhHHH
Q 007554 207 LEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAFE 284 (599)
Q Consensus 207 ~aL~~~p~illlDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~p~~~i~~~~D~v~~L~~G~iv~~G~~~~~~~ 284 (599)
|||+.+|++|||||||+|||+.++..+.+.|++++++|+|||++||++ +++..+||++++|++|++++.|+++++.+
T Consensus 159 raL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tiiivtHd~-~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 235 (256)
T 1vpl_A 159 RALMVNPRLAILDEPTSGLDVLNAREVRKILKQASQEGLTILVSSHNM-LEVEFLCDRIALIHNGTIVETGTVEELKE 235 (256)
T ss_dssp HHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEEECCH-HHHTTTCSEEEEEETTEEEEEEEHHHHHH
T ss_pred HHHHcCCCEEEEeCCccccCHHHHHHHHHHHHHHHhCCCEEEEEcCCH-HHHHHHCCEEEEEECCEEEEecCHHHHHH
Confidence 999999999999999999999999999999999987899999999996 57788899999999999999999887643
No 10
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=100.00 E-value=1.8e-48 Score=394.99 Aligned_cols=217 Identities=20% Similarity=0.298 Sum_probs=189.3
Q ss_pred eEEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCC----
Q 007554 51 RLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLS---- 126 (599)
Q Consensus 51 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~G~sGsGKSTLl~~L~G~~~~~~~~~G~I~~~g~~~~~~---- 126 (599)
.|+++||++.| +++++|+|||+++++||+++|+||||||||||+|+|+|+++|+ +|+|.++|++....
T Consensus 7 ~l~i~~l~~~y-----~~~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~p~---~G~i~~~g~~~~~~~~~~ 78 (257)
T 1g6h_A 7 ILRTENIVKYF-----GEFKALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKAD---EGRVYFENKDITNKEPAE 78 (257)
T ss_dssp EEEEEEEEEEE-----TTEEEEEEECCEEETTCEEEEECSTTSSHHHHHHHHTTSSCCS---EEEEEETTEECTTCCHHH
T ss_pred EEEEeeeEEEE-----CCEeeEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CcEEEECCEECCCCCHHH
Confidence 49999999998 3467999999999999999999999999999999999999885 99999999875321
Q ss_pred --cCeEEEEcCCCCCCCCCCHHHHHHHHhhc-cCCC---------CCCHHHHHHHHHHHHHHcCCCccccccccCcccCC
Q 007554 127 --FGTAAYVTQDDNLIGTLTVRETISYSARL-RLPD---------KMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRG 194 (599)
Q Consensus 127 --~~~~~yv~Q~~~l~~~lTV~e~l~~~~~~-~~~~---------~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~ 194 (599)
++.++||+|++.+++.+||+||+.++... .... .....+.+++++++++.+||++..++.+ ++
T Consensus 79 ~~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~ 153 (257)
T 1g6h_A 79 LYHYGIVRTFQTPQPLKEMTVLENLLIGEICPGESPLNSLFYKKWIPKEEEMVEKAFKILEFLKLSHLYDRKA-----GE 153 (257)
T ss_dssp HHHHTEEECCCCCGGGGGSBHHHHHHGGGTSTTSCHHHHHHHCSSCCCCHHHHHHHHHHHHHTTCGGGTTSBG-----GG
T ss_pred HHhCCEEEEccCCccCCCCcHHHHHHHHHhhhccCcccccccccccCCHHHHHHHHHHHHHHcCCchhhCCCc-----hh
Confidence 23699999999999999999999987532 1110 0123344567899999999988887754 57
Q ss_pred CCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhccCeEEEEeCCeEE
Q 007554 195 ISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTV 274 (599)
Q Consensus 195 LSGGerqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~p~~~i~~~~D~v~~L~~G~iv 274 (599)
|||||||||+|||||+.+|++|||||||+|||+.++..+++.|++++++|+|||++||++ +++.++||++++|++|+++
T Consensus 154 LSgGqkQrv~iAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tvi~vtHd~-~~~~~~~d~v~~l~~G~i~ 232 (257)
T 1g6h_A 154 LSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVLELKAKGITFLIIEHRL-DIVLNYIDHLYVMFNGQII 232 (257)
T ss_dssp SCHHHHHHHHHHHHHHTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCC-STTGGGCSEEEEEETTEEE
T ss_pred CCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCH-HHHHHhCCEEEEEECCEEE
Confidence 999999999999999999999999999999999999999999999987899999999997 4678899999999999999
Q ss_pred EecChhh
Q 007554 275 YFGETSA 281 (599)
Q Consensus 275 ~~G~~~~ 281 (599)
+.|++++
T Consensus 233 ~~g~~~~ 239 (257)
T 1g6h_A 233 AEGRGEE 239 (257)
T ss_dssp EEEESHH
T ss_pred EEeCHHH
Confidence 9999887
No 11
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=100.00 E-value=6.8e-48 Score=409.08 Aligned_cols=217 Identities=25% Similarity=0.396 Sum_probs=194.2
Q ss_pred eEEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCC------
Q 007554 51 RLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTK------ 124 (599)
Q Consensus 51 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~G~sGsGKSTLl~~L~G~~~~~~~~~G~I~~~g~~~~------ 124 (599)
.|+++||+++| +++.+|+|+|+++++||+++|+||||||||||||+|+|+.+|+ +|+|.++|++..
T Consensus 3 ~l~~~~l~~~y-----~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~---~G~I~i~g~~~~~~~~~~ 74 (372)
T 1g29_1 3 GVRLVDVWKVF-----GEVTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPS---RGQIYIGDKLVADPEKGI 74 (372)
T ss_dssp EEEEEEEEEEE-----TTEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCCS---EEEEEETTEEEEEGGGTE
T ss_pred EEEEEeEEEEE-----CCEEEEeeeEEEEcCCCEEEEECCCCcHHHHHHHHHHcCCCCC---ccEEEECCEECccccccc
Confidence 38999999998 3467999999999999999999999999999999999999985 999999998642
Q ss_pred ---CCcCeEEEEcCCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHH
Q 007554 125 ---LSFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERR 201 (599)
Q Consensus 125 ---~~~~~~~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSGGerq 201 (599)
...+.+|||+|+..+|+++||+||+.|+.+.+ ..++.+.+++++++++.+||.+..++.+ ++|||||||
T Consensus 75 ~~~~~~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~---~~~~~~~~~~v~~~l~~~~L~~~~~r~~-----~~LSGGq~Q 146 (372)
T 1g29_1 75 FVPPKDRDIAMVFQSYALYPHMTVYDNIAFPLKLR---KVPRQEIDQRVREVAELLGLTELLNRKP-----RELSGGQRQ 146 (372)
T ss_dssp ECCGGGSSEEEECSCCCCCTTSCHHHHHHHHHHHT---TCCHHHHHHHHHHHHHHHTCGGGTTCCG-----GGSCHHHHH
T ss_pred cCCHhHCCEEEEeCCCccCCCCCHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHCCCchHhcCCc-----ccCCHHHHH
Confidence 12357999999999999999999999987653 2345666788999999999998887754 579999999
Q ss_pred HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCchHHHhccCeEEEEeCCeEEEecChh
Q 007554 202 RVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRD-GRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETS 280 (599)
Q Consensus 202 Rv~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~L~~l~~~-g~tvi~~~H~p~~~i~~~~D~v~~L~~G~iv~~G~~~ 280 (599)
||+|||||+.+|++|||||||||||+.++.++.+.|+++.++ |.|+|++|||+ .++..+||++++|++|+++..|+++
T Consensus 147 RvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~-~~a~~~adri~vl~~G~i~~~g~~~ 225 (372)
T 1g29_1 147 RVALGRAIVRKPQVFLMDEPLSNLDAKLRVRMRAELKKLQRQLGVTTIYVTHDQ-VEAMTMGDRIAVMNRGVLQQVGSPD 225 (372)
T ss_dssp HHHHHHHHHTCCSEEEEECTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCH-HHHHHHCSEEEEEETTEEEEEECHH
T ss_pred HHHHHHHHhcCCCEEEECCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEECCCH-HHHHHhCCEEEEEeCCEEEEeCCHH
Confidence 999999999999999999999999999999999999999764 89999999995 6788999999999999999999998
Q ss_pred hHHH
Q 007554 281 AAFE 284 (599)
Q Consensus 281 ~~~~ 284 (599)
++..
T Consensus 226 ~l~~ 229 (372)
T 1g29_1 226 EVYD 229 (372)
T ss_dssp HHHH
T ss_pred HHHh
Confidence 8753
No 12
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=100.00 E-value=3.9e-48 Score=408.90 Aligned_cols=216 Identities=26% Similarity=0.414 Sum_probs=193.9
Q ss_pred EEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC---CcC
Q 007554 52 LTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL---SFG 128 (599)
Q Consensus 52 l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~G~sGsGKSTLl~~L~G~~~~~~~~~G~I~~~g~~~~~---~~~ 128 (599)
|+++||+++| +++.+|+|+|+++++||+++|+||||||||||||+|+|+++|+ +|+|.++|++... ..+
T Consensus 4 l~~~~l~~~y-----~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~---~G~I~i~g~~i~~~~~~~r 75 (362)
T 2it1_A 4 IKLENIVKKF-----GNFTALNNINLKIKDGEFMALLGPSGSGKSTLLYTIAGIYKPT---SGKIYFDEKDVTELPPKDR 75 (362)
T ss_dssp EEEEEEEEES-----SSSEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCS---EEEEEETTEECTTSCGGGT
T ss_pred EEEEeEEEEE-----CCEEEEEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCCCCC---ceEEEECCEECCcCCHhHC
Confidence 8999999988 3467999999999999999999999999999999999999885 9999999987532 235
Q ss_pred eEEEEcCCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHHHHHHHH
Q 007554 129 TAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALE 208 (599)
Q Consensus 129 ~~~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSGGerqRv~ia~a 208 (599)
.+|||+|+..+|+++||+||+.|+.+.+ ..++++.+++++++++.+||.+..++. +++|||||||||+||||
T Consensus 76 ~ig~v~Q~~~l~~~ltv~eni~~~~~~~---~~~~~~~~~~v~~~l~~~~L~~~~~r~-----~~~LSGGq~QRvalArA 147 (362)
T 2it1_A 76 NVGLVFQNWALYPHMTVYKNIAFPLELR---KAPREEIDKKVREVAKMLHIDKLLNRY-----PWQLSGGQQQRVAIARA 147 (362)
T ss_dssp TEEEECTTCCCCTTSCHHHHHHHHHHHT---TCCHHHHHHHHHHHHHHTTCTTCTTCC-----GGGSCHHHHHHHHHHHH
T ss_pred cEEEEecCcccCCCCCHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCCchHhhCC-----hhhCCHHHHHHHHHHHH
Confidence 7999999999999999999999987653 234566678899999999999888775 45799999999999999
Q ss_pred HhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCchHHHhccCeEEEEeCCeEEEecChhhHHH
Q 007554 209 ILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRD-GRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAFE 284 (599)
Q Consensus 209 L~~~p~illlDEPtsgLD~~~~~~i~~~L~~l~~~-g~tvi~~~H~p~~~i~~~~D~v~~L~~G~iv~~G~~~~~~~ 284 (599)
|+.+|++|||||||||||+.++.++.+.|+++.++ |.|+|++|||+ .++..+||++++|++|+++..|+++++..
T Consensus 148 L~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~-~~a~~~adri~vl~~G~i~~~g~~~~~~~ 223 (362)
T 2it1_A 148 LVKEPEVLLLDEPLSNLDALLRLEVRAELKRLQKELGITTVYVTHDQ-AEALAMADRIAVIREGEILQVGTPDEVYY 223 (362)
T ss_dssp HTTCCSEEEEESGGGGSCHHHHHHHHHHHHHHHHHHTCEEEEEESCH-HHHHHHCSEEEEEETTEEEEEECHHHHHH
T ss_pred HHcCCCEEEEECccccCCHHHHHHHHHHHHHHHHhCCCEEEEECCCH-HHHHHhCCEEEEEECCEEEEEcCHHHHHh
Confidence 99999999999999999999999999999999764 99999999995 67889999999999999999999988753
No 13
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=100.00 E-value=3.3e-48 Score=409.05 Aligned_cols=216 Identities=25% Similarity=0.421 Sum_probs=192.6
Q ss_pred EEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC---CcC
Q 007554 52 LTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL---SFG 128 (599)
Q Consensus 52 l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~G~sGsGKSTLl~~L~G~~~~~~~~~G~I~~~g~~~~~---~~~ 128 (599)
|+++||+++| +++.+|+|+|+++++||+++|+||||||||||||+|+|+.+|+ +|+|.++|++... ..+
T Consensus 4 l~~~~l~~~y-----~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~---~G~I~i~g~~i~~~~~~~r 75 (359)
T 2yyz_A 4 IRVVNLKKYF-----GKVKAVDGVSFEVKDGEFVALLGPSGCGKTTTLLMLAGIYKPT---SGEIYFDDVLVNDIPPKYR 75 (359)
T ss_dssp EEEEEEEEEE-----TTEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHHTSSCCS---EEEEEETTEECTTSCGGGT
T ss_pred EEEEEEEEEE-----CCEEEEeeeEEEEcCCCEEEEEcCCCchHHHHHHHHHCCCCCC---ccEEEECCEECCCCChhhC
Confidence 8999999998 3467999999999999999999999999999999999999885 9999999987532 235
Q ss_pred eEEEEcCCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHHHHHHHH
Q 007554 129 TAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALE 208 (599)
Q Consensus 129 ~~~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSGGerqRv~ia~a 208 (599)
.+|||+|+..+|+++||+||+.|+.+.+ ..++++.+++++++++.+||.+..++.+ ++|||||||||+||||
T Consensus 76 ~ig~v~Q~~~l~~~ltv~eni~~~~~~~---~~~~~~~~~~v~~~l~~~~L~~~~~r~~-----~~LSgGq~QRvalArA 147 (359)
T 2yyz_A 76 EVGMVFQNYALYPHMTVFENIAFPLRAR---RISKDEVEKRVVEIARKLLIDNLLDRKP-----TQLSGGQQQRVALARA 147 (359)
T ss_dssp TEEEECSSCCCCTTSCHHHHHHGGGSSS---CSHHHHTTHHHHHHHHHTTCGGGTTSCG-----GGSCHHHHHHHHHHHH
T ss_pred cEEEEecCcccCCCCCHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCCchHhcCCh-----hhCCHHHHHHHHHHHH
Confidence 7999999999999999999999986432 2234445678999999999998887754 5799999999999999
Q ss_pred HhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCchHHHhccCeEEEEeCCeEEEecChhhHHH
Q 007554 209 ILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRD-GRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAFE 284 (599)
Q Consensus 209 L~~~p~illlDEPtsgLD~~~~~~i~~~L~~l~~~-g~tvi~~~H~p~~~i~~~~D~v~~L~~G~iv~~G~~~~~~~ 284 (599)
|+.+|++|||||||||||+.++..+.+.|+++.++ |.|+|++|||+ .++..+||++++|++|+++..|+++++..
T Consensus 148 L~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~-~~~~~~adri~vl~~G~i~~~g~~~~l~~ 223 (359)
T 2yyz_A 148 LVKQPKVLLFDEPLSNLDANLRMIMRAEIKHLQQELGITSVYVTHDQ-AEAMTMASRIAVFNQGKLVQYGTPDEVYD 223 (359)
T ss_dssp HTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHCCEEEEEESCH-HHHHHHCSEEEEEETTEEEEEECHHHHHH
T ss_pred HHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCH-HHHHHhCCEEEEEECCEEEEeCCHHHHHh
Confidence 99999999999999999999999999999999764 89999999995 67889999999999999999999988753
No 14
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=100.00 E-value=5.4e-48 Score=406.51 Aligned_cols=219 Identities=24% Similarity=0.420 Sum_probs=195.4
Q ss_pred ceeEEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC---
Q 007554 49 SARLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL--- 125 (599)
Q Consensus 49 ~~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~G~sGsGKSTLl~~L~G~~~~~~~~~G~I~~~g~~~~~--- 125 (599)
...|+++||+++|. +++.+|+|+|+++++||+++|+||||||||||||+|+|+++|+ +|+|.++|++...
T Consensus 12 ~~~l~~~~l~~~y~----g~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~---~G~I~i~g~~i~~~~~ 84 (355)
T 1z47_A 12 SMTIEFVGVEKIYP----GGARSVRGVSFQIREGEMVGLLGPSGSGKTTILRLIAGLERPT---KGDVWIGGKRVTDLPP 84 (355)
T ss_dssp CEEEEEEEEEECCT----TSTTCEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCCS---EEEEEETTEECTTCCG
T ss_pred CceEEEEEEEEEEc----CCCEEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHhCCCCCC---ccEEEECCEECCcCCh
Confidence 34699999999872 2357999999999999999999999999999999999999885 9999999987532
Q ss_pred CcCeEEEEcCCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHHHHH
Q 007554 126 SFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSI 205 (599)
Q Consensus 126 ~~~~~~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSGGerqRv~i 205 (599)
..+.+|||+|+..+|+.+||+||+.|+.+.+ ..++++.+++++++++.+||++..++.+ ++|||||||||+|
T Consensus 85 ~~r~ig~v~Q~~~l~~~ltv~eni~~~l~~~---~~~~~~~~~~v~~~l~~~gL~~~~~r~~-----~~LSGGq~QRval 156 (355)
T 1z47_A 85 QKRNVGLVFQNYALFQHMTVYDNVSFGLREK---RVPKDEMDARVRELLRFMRLESYANRFP-----HELSGGQQQRVAL 156 (355)
T ss_dssp GGSSEEEECGGGCCCTTSCHHHHHHHHHHHT---TCCHHHHHHHHHHHHHHTTCGGGTTSCG-----GGSCHHHHHHHHH
T ss_pred hhCcEEEEecCcccCCCCCHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCChhHhcCCc-----ccCCHHHHHHHHH
Confidence 2467999999999999999999999987653 2345666788999999999998887754 5799999999999
Q ss_pred HHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCchHHHhccCeEEEEeCCeEEEecChhhHH
Q 007554 206 ALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRD-GRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAF 283 (599)
Q Consensus 206 a~aL~~~p~illlDEPtsgLD~~~~~~i~~~L~~l~~~-g~tvi~~~H~p~~~i~~~~D~v~~L~~G~iv~~G~~~~~~ 283 (599)
||||+.+|++|||||||||||+.++.++.+.|+++.++ |.|+|++|||+ +++..+||++++|++|+++..|+++++.
T Consensus 157 ArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~-~~a~~~adri~vl~~G~i~~~g~~~~l~ 234 (355)
T 1z47_A 157 ARALAPRPQVLLFDEPFAAIDTQIRRELRTFVRQVHDEMGVTSVFVTHDQ-EEALEVADRVLVLHEGNVEQFGTPEEVY 234 (355)
T ss_dssp HHHHTTCCSEEEEESTTCCSSHHHHHHHHHHHHHHHHHHTCEEEEECSCH-HHHHHHCSEEEEEETTEEEEEECHHHHH
T ss_pred HHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEECCCH-HHHHHhCCEEEEEECCEEEEEcCHHHHH
Confidence 99999999999999999999999999999999999764 89999999995 6788999999999999999999998875
No 15
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=100.00 E-value=4.3e-48 Score=408.11 Aligned_cols=215 Identities=25% Similarity=0.374 Sum_probs=192.8
Q ss_pred EEEEeEEEEEEccCCcccc--eeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCC-----
Q 007554 52 LTWKDLTVMVTLSNGETHN--VLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTK----- 124 (599)
Q Consensus 52 l~~~~ls~~~~~~~~~~~~--iL~~vs~~i~~Ge~~aI~G~sGsGKSTLl~~L~G~~~~~~~~~G~I~~~g~~~~----- 124 (599)
|+++||+++| +++. +|+|+|+++++||+++|+||||||||||||+|+|+++|+ +|+|.++|++..
T Consensus 4 l~i~~l~~~y-----~~~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~---~G~I~i~g~~i~~~~~~ 75 (353)
T 1oxx_K 4 IIVKNVSKVF-----KKGKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPS---TGELYFDDRLVASNGKL 75 (353)
T ss_dssp EEEEEEEEEE-----GGGTEEEEEEEEEEECTTCEEEEECSCHHHHHHHHHHHHTSSCCS---EEEEEETTEEEEETTEE
T ss_pred EEEEeEEEEE-----CCEeeeeEeceEEEECCCCEEEEECCCCCcHHHHHHHHhCCCCCC---ceEEEECCEECcccccc
Confidence 8899999998 3466 999999999999999999999999999999999999885 999999998642
Q ss_pred ---CCcCeEEEEcCCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHH
Q 007554 125 ---LSFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERR 201 (599)
Q Consensus 125 ---~~~~~~~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSGGerq 201 (599)
...+.+|||+|+..+|+.+||+||+.|+.+.+ ..++++.+++++++++.+||.+..++.+ ++|||||||
T Consensus 76 ~~~~~~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~---~~~~~~~~~~v~~~l~~~~L~~~~~~~~-----~~LSGGq~Q 147 (353)
T 1oxx_K 76 IVPPEDRKIGMVFQTWALYPNLTAFENIAFPLTNM---KMSKEEIRKRVEEVAKILDIHHVLNHFP-----RELSGAQQQ 147 (353)
T ss_dssp SSCGGGSCEEEEETTSCCCTTSCHHHHHHGGGTTS---SCCHHHHHHHHHHHHHHTTCGGGTTSCG-----GGSCHHHHH
T ss_pred cCChhhCCEEEEeCCCccCCCCCHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCchHhcCCh-----hhCCHHHHH
Confidence 12467999999999999999999999986543 2345666788999999999998887754 579999999
Q ss_pred HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCCchHHHhccCeEEEEeCCeEEEecChh
Q 007554 202 RVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSR-DGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETS 280 (599)
Q Consensus 202 Rv~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~L~~l~~-~g~tvi~~~H~p~~~i~~~~D~v~~L~~G~iv~~G~~~ 280 (599)
||+|||||+.+|++|||||||+|||+.++.++.+.|+++.+ .|+|+|++|||+ +++..+||++++|++|+++..|+++
T Consensus 148 RvalAraL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~-~~~~~~adri~vl~~G~i~~~g~~~ 226 (353)
T 1oxx_K 148 RVALARALVKDPSLLLLDEPFSNLDARMRDSARALVKEVQSRLGVTLLVVSHDP-ADIFAIADRVGVLVKGKLVQVGKPE 226 (353)
T ss_dssp HHHHHHHHTTCCSEEEEESTTTTSCGGGHHHHHHHHHHHHHHHCCEEEEEESCH-HHHHHHCSEEEEEETTEEEEEECHH
T ss_pred HHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHHHHhCCEEEEEECCEEEEEcCHH
Confidence 99999999999999999999999999999999999999976 499999999995 6788999999999999999999998
Q ss_pred hHH
Q 007554 281 AAF 283 (599)
Q Consensus 281 ~~~ 283 (599)
++.
T Consensus 227 ~l~ 229 (353)
T 1oxx_K 227 DLY 229 (353)
T ss_dssp HHH
T ss_pred HHH
Confidence 875
No 16
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=100.00 E-value=7e-48 Score=386.73 Aligned_cols=215 Identities=23% Similarity=0.353 Sum_probs=187.4
Q ss_pred eEEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCC----
Q 007554 51 RLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLS---- 126 (599)
Q Consensus 51 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~G~sGsGKSTLl~~L~G~~~~~~~~~G~I~~~g~~~~~~---- 126 (599)
.|+++||++.| +++.+|+|+|+++++||+++|+||||||||||+|+|+|+++|+ +|+|.++|++....
T Consensus 6 ~l~~~~l~~~y-----~~~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~~~~~ 77 (240)
T 1ji0_A 6 VLEVQSLHVYY-----GAIHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQ---KGKIIFNGQDITNKPAHV 77 (240)
T ss_dssp EEEEEEEEEEE-----TTEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCS---EEEEEETTEECTTCCHHH
T ss_pred eEEEEeEEEEE-----CCeeEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CceEEECCEECCCCCHHH
Confidence 48999999998 3467999999999999999999999999999999999999885 99999999875321
Q ss_pred --cCeEEEEcCCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcC-CCccccccccCcccCCCCHHHHHHH
Q 007554 127 --FGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMG-LQDCADTVIGNWHLRGISGGERRRV 203 (599)
Q Consensus 127 --~~~~~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~l~-L~~~~~~~vg~~~~~~LSGGerqRv 203 (599)
.+.++||+|++.+++.+||+||+.++.... ....+.+++++++++.++ |.+..++. +++|||||||||
T Consensus 78 ~~~~~i~~v~q~~~l~~~ltv~enl~~~~~~~----~~~~~~~~~~~~~l~~~~~l~~~~~~~-----~~~LSgGq~qrv 148 (240)
T 1ji0_A 78 INRMGIALVPEGRRIFPELTVYENLMMGAYNR----KDKEGIKRDLEWIFSLFPRLKERLKQL-----GGTLSGGEQQML 148 (240)
T ss_dssp HHHTTEEEECSSCCCCTTSBHHHHHHGGGTTC----CCSSHHHHHHHHHHHHCHHHHTTTTSB-----SSSSCHHHHHHH
T ss_pred HHhCCEEEEecCCccCCCCcHHHHHHHhhhcC----CCHHHHHHHHHHHHHHcccHhhHhcCC-----hhhCCHHHHHHH
Confidence 235999999999999999999999864211 122344567788999994 87776664 457999999999
Q ss_pred HHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhccCeEEEEeCCeEEEecChhhHH
Q 007554 204 SIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAF 283 (599)
Q Consensus 204 ~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~p~~~i~~~~D~v~~L~~G~iv~~G~~~~~~ 283 (599)
+|||||+.+|++|||||||+|||+.++..+.+.|++++++|+|||++||++ .++.++||++++|++|++++.|+++++.
T Consensus 149 ~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~~~~~g~tvi~vtHd~-~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 227 (240)
T 1ji0_A 149 AIGRALMSRPKLLMMDEPSLGLAPILVSEVFEVIQKINQEGTTILLVEQNA-LGALKVAHYGYVLETGQIVLEGKASELL 227 (240)
T ss_dssp HHHHHHTTCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCCEEEEESCH-HHHHHHCSEEEEEETTEEEEEEEHHHHH
T ss_pred HHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEecCH-HHHHHhCCEEEEEECCEEEEEcCHHHHh
Confidence 999999999999999999999999999999999999987899999999995 5788999999999999999999887653
No 17
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=100.00 E-value=9e-48 Score=391.38 Aligned_cols=215 Identities=30% Similarity=0.371 Sum_probs=189.9
Q ss_pred eeEEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCC---
Q 007554 50 ARLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLS--- 126 (599)
Q Consensus 50 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~G~sGsGKSTLl~~L~G~~~~~~~~~G~I~~~g~~~~~~--- 126 (599)
..|+++||++.+ +++.+|+|||+++++||+++|+||||||||||+|+|+|+++|+ +|+|.++|++....
T Consensus 10 ~~l~~~~l~~~~-----~~~~vL~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~---~G~I~~~g~~~~~~~~~ 81 (266)
T 4g1u_C 10 ALLEASHLHYHV-----QQQALINDVSLHIASGEMVAIIGPNGAGKSTLLRLLTGYLSPS---HGECHLLGQNLNSWQPK 81 (266)
T ss_dssp CEEEEEEEEEEE-----TTEEEEEEEEEEEETTCEEEEECCTTSCHHHHHHHHTSSSCCS---SCEEEETTEETTTSCHH
T ss_pred ceEEEEeEEEEe-----CCeeEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCC---CcEEEECCEECCcCCHH
Confidence 359999999998 4578999999999999999999999999999999999999885 99999999985421
Q ss_pred --cCeEEEEcCCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHHHH
Q 007554 127 --FGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVS 204 (599)
Q Consensus 127 --~~~~~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSGGerqRv~ 204 (599)
.+.++|++|++.+++.+||+||+.++.... ...+.+++++++++.++|.+..++.+ ++|||||||||+
T Consensus 82 ~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~-----~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LSgGq~QRv~ 151 (266)
T 4g1u_C 82 ALARTRAVMRQYSELAFPFSVSEVIQMGRAPY-----GGSQDRQALQQVMAQTDCLALAQRDY-----RVLSGGEQQRVQ 151 (266)
T ss_dssp HHHHHEEEECSCCCCCSCCBHHHHHHGGGTTS-----CSTTHHHHHHHHHHHTTCSTTTTSBG-----GGCCHHHHHHHH
T ss_pred HHhheEEEEecCCccCCCCCHHHHHHhhhhhc-----CcHHHHHHHHHHHHHcCChhHhcCCc-----ccCCHHHHHHHH
Confidence 246899999999888899999999875432 12234567889999999998887754 579999999999
Q ss_pred HHHHHhh------CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCchHHHhccCeEEEEeCCeEEEec
Q 007554 205 IALEILM------RPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRD-GRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFG 277 (599)
Q Consensus 205 ia~aL~~------~p~illlDEPtsgLD~~~~~~i~~~L~~l~~~-g~tvi~~~H~p~~~i~~~~D~v~~L~~G~iv~~G 277 (599)
|||||+. +|++|||||||+|||+.++..+++.|++++++ |+|||++|||+ +++.++||++++|++|++++.|
T Consensus 152 iAraL~~~~~~~~~p~lLllDEPts~LD~~~~~~i~~~l~~l~~~~~~tvi~vtHdl-~~~~~~~d~v~vl~~G~i~~~g 230 (266)
T 4g1u_C 152 LARVLAQLWQPQPTPRWLFLDEPTSALDLYHQQHTLRLLRQLTRQEPLAVCCVLHDL-NLAALYADRIMLLAQGKLVACG 230 (266)
T ss_dssp HHHHHHHTCCSSCCCEEEEECCCCSSCCHHHHHHHHHHHHHHHHHSSEEEEEECSCH-HHHHHHCSEEEEEETTEEEEEE
T ss_pred HHHHHhcccccCCCCCEEEEeCccccCCHHHHHHHHHHHHHHHHcCCCEEEEEEcCH-HHHHHhCCEEEEEECCEEEEEc
Confidence 9999999 99999999999999999999999999999764 67999999995 6788899999999999999999
Q ss_pred ChhhHH
Q 007554 278 ETSAAF 283 (599)
Q Consensus 278 ~~~~~~ 283 (599)
+++++.
T Consensus 231 ~~~~~~ 236 (266)
T 4g1u_C 231 TPEEVL 236 (266)
T ss_dssp CHHHHC
T ss_pred CHHHHh
Confidence 998764
No 18
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=100.00 E-value=6.6e-48 Score=408.56 Aligned_cols=216 Identities=23% Similarity=0.378 Sum_probs=187.4
Q ss_pred EEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC---CcC
Q 007554 52 LTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL---SFG 128 (599)
Q Consensus 52 l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~G~sGsGKSTLl~~L~G~~~~~~~~~G~I~~~g~~~~~---~~~ 128 (599)
|+++||+++| +++.+|+|+|+++++||+++|+||||||||||||+|+|+++|+ +|+|.++|++... ..+
T Consensus 12 l~~~~l~~~y-----~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~---~G~I~i~g~~i~~~~~~~r 83 (372)
T 1v43_A 12 VKLENLTKRF-----GNFTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPT---EGRIYFGDRDVTYLPPKDR 83 (372)
T ss_dssp EEEEEEEEEE-----TTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCS---EEEEEETTEECTTSCGGGG
T ss_pred EEEEEEEEEE-----CCEEEEeeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCC---ceEEEECCEECCCCChhhC
Confidence 9999999998 3467999999999999999999999999999999999999985 9999999987532 235
Q ss_pred eEEEEcCCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHHHHHHHH
Q 007554 129 TAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALE 208 (599)
Q Consensus 129 ~~~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSGGerqRv~ia~a 208 (599)
.+|||+|+..+|+++||+||+.|+.+.+ ..++++.+++++++++.+||.+..++. +++|||||||||+||||
T Consensus 84 ~ig~v~Q~~~l~~~ltv~eni~~~~~~~---~~~~~~~~~~v~~~l~~~~L~~~~~r~-----~~~LSGGq~QRvalArA 155 (372)
T 1v43_A 84 NISMVFQSYAVWPHMTVYENIAFPLKIK---KFPKDEIDKRVRWAAELLQIEELLNRY-----PAQLSGGQRQRVAVARA 155 (372)
T ss_dssp TEEEEEC------CCCHHHHHHTTCC-----CCCHHHHHHHHHHHHHHTTCGGGTTSC-----TTTCCSSCHHHHHHHHH
T ss_pred cEEEEecCcccCCCCCHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCChhHhcCC-----hhhCCHHHHHHHHHHHH
Confidence 7999999999999999999999975432 234566677899999999999888774 45799999999999999
Q ss_pred HhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCchHHHhccCeEEEEeCCeEEEecChhhHHH
Q 007554 209 ILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRD-GRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAFE 284 (599)
Q Consensus 209 L~~~p~illlDEPtsgLD~~~~~~i~~~L~~l~~~-g~tvi~~~H~p~~~i~~~~D~v~~L~~G~iv~~G~~~~~~~ 284 (599)
|+.+|++|||||||||||+.++.++.+.|+++.++ |.|+|++|||+ .++..+||++++|++|+++..|+++++..
T Consensus 156 L~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~-~~a~~~adri~vl~~G~i~~~g~~~~l~~ 231 (372)
T 1v43_A 156 IVVEPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQKLKVTTIYVTHDQ-VEAMTMGDRIAVMNRGQLLQIGSPTEVYL 231 (372)
T ss_dssp HTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCH-HHHHHHCSEEEEEETTEEEEEECHHHHHH
T ss_pred HhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCH-HHHHHhCCEEEEEECCEEEEeCCHHHHHh
Confidence 99999999999999999999999999999999764 89999999995 67889999999999999999999988753
No 19
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=100.00 E-value=3.1e-48 Score=401.33 Aligned_cols=247 Identities=25% Similarity=0.331 Sum_probs=198.3
Q ss_pred ChhhhhhhhHHHhhhcCCCCCccccCCCCCchhhHHhhhhccccCCCcceeEEEEeEEEEEEccCCcccceeeceEEEEe
Q 007554 1 MRDSAASNVIMEIEASKPAGNSIVVGGLSPLSETIWKEKINTEFSGDVSARLTWKDLTVMVTLSNGETHNVLEGLTGYAE 80 (599)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~ 80 (599)
+++.++++|++++++.+|....... ..+ . ......|+++||++.|. +.+.+|+|||++++
T Consensus 19 ~~~~~~~~ri~~~l~~~~~~~~~~~-------------~~~--~-~~~~~~i~~~~vs~~y~----~~~~vL~~isl~i~ 78 (306)
T 3nh6_A 19 SHMFIDMENMFDLLKEETEVKDLPG-------------AGP--L-RFQKGRIEFENVHFSYA----DGRETLQDVSFTVM 78 (306)
T ss_dssp CCTTCCHHHHHHHHHHHHSCCCCTT-------------CBC--C-CCSSCCEEEEEEEEESS----TTCEEEEEEEEEEC
T ss_pred HHHHHHHHHHHHHHhCCcccccccc-------------ccc--c-CCCCCeEEEEEEEEEcC----CCCceeeeeeEEEc
Confidence 3678999999999987665432000 000 0 01123599999999883 24679999999999
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCC-----cCeEEEEcCCCCCCCCCCHHHHHHHHhhc
Q 007554 81 PGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLS-----FGTAAYVTQDDNLIGTLTVRETISYSARL 155 (599)
Q Consensus 81 ~Ge~~aI~G~sGsGKSTLl~~L~G~~~~~~~~~G~I~~~g~~~~~~-----~~~~~yv~Q~~~l~~~lTV~e~l~~~~~~ 155 (599)
+||++||+||||||||||+|+|+|+++|. +|+|.+||+++... ++.++||+|++.+|+. ||+||+.++...
T Consensus 79 ~Ge~vaivG~sGsGKSTLl~ll~gl~~p~---~G~I~i~G~~i~~~~~~~~r~~i~~v~Q~~~lf~~-Tv~eNi~~~~~~ 154 (306)
T 3nh6_A 79 PGQTLALVGPSGAGKSTILRLLFRFYDIS---SGCIRIDGQDISQVTQASLRSHIGVVPQDTVLFND-TIADNIRYGRVT 154 (306)
T ss_dssp TTCEEEEESSSCHHHHHHHHHHTTSSCCS---EEEEEETTEETTSBCHHHHHHTEEEECSSCCCCSE-EHHHHHHTTSTT
T ss_pred CCCEEEEECCCCchHHHHHHHHHcCCCCC---CcEEEECCEEcccCCHHHHhcceEEEecCCccCcc-cHHHHHHhhccc
Confidence 99999999999999999999999999986 99999999986431 3569999999999865 999999986421
Q ss_pred cCCCCCCHHHHHHHHHHHHHHcCCC-------ccccccccCcccCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHH
Q 007554 156 RLPDKMPWSEKRTLVERTIIEMGLQ-------DCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSA 228 (599)
Q Consensus 156 ~~~~~~~~~~~~~~v~~~l~~l~L~-------~~~~~~vg~~~~~~LSGGerqRv~ia~aL~~~p~illlDEPtsgLD~~ 228 (599)
... +.+.+.++..++. +..++.+|+ .+.+|||||||||+|||||+.+|+|||||||||+||+.
T Consensus 155 -----~~~----~~~~~~~~~~~l~~~i~~lp~gl~t~~~~-~g~~LSGGqrQRvaiARAL~~~p~iLlLDEPts~LD~~ 224 (306)
T 3nh6_A 155 -----AGN----DEVEAAAQAAGIHDAIMAFPEGYRTQVGE-RGLKLSGGEKQRVAIARTILKAPGIILLDEATSALDTS 224 (306)
T ss_dssp -----CCH----HHHHHHHHHHTCHHHHHHSTTGGGCEEST-TSBCCCHHHHHHHHHHHHHHHCCSEEEEECCSSCCCHH
T ss_pred -----CCH----HHHHHHHHHhCcHHHHHhccchhhhHhcC-CcCCCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHH
Confidence 112 2234444444443 356777775 56789999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhCCCEEEEEecCCchHHHhccCeEEEEeCCeEEEecChhhHHH
Q 007554 229 AAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAFE 284 (599)
Q Consensus 229 ~~~~i~~~L~~l~~~g~tvi~~~H~p~~~i~~~~D~v~~L~~G~iv~~G~~~~~~~ 284 (599)
++..+.+.|+++.+ ++|+|+++|++ +.+. .||+|++|++|++++.|+++++..
T Consensus 225 ~~~~i~~~l~~l~~-~~Tvi~itH~l-~~~~-~aD~i~vl~~G~iv~~G~~~el~~ 277 (306)
T 3nh6_A 225 NERAIQASLAKVCA-NRTTIVVAHRL-STVV-NADQILVIKDGCIVERGRHEALLS 277 (306)
T ss_dssp HHHHHHHHHHHHHT-TSEEEEECCSH-HHHH-TCSEEEEEETTEEEEEECHHHHHH
T ss_pred HHHHHHHHHHHHcC-CCEEEEEEcCh-HHHH-cCCEEEEEECCEEEEECCHHHHHh
Confidence 99999999999864 68999999996 4554 499999999999999999988764
No 20
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=100.00 E-value=2.6e-47 Score=400.94 Aligned_cols=211 Identities=26% Similarity=0.418 Sum_probs=188.3
Q ss_pred EEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC---CcC
Q 007554 52 LTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL---SFG 128 (599)
Q Consensus 52 l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~G~sGsGKSTLl~~L~G~~~~~~~~~G~I~~~g~~~~~---~~~ 128 (599)
|+++||+++| +++ +|+|+|+++++||+++|+||||||||||||+|+|+.+|+ +|+|.++|++... ..+
T Consensus 2 l~~~~l~~~y-----~~~-~l~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~---~G~I~~~g~~i~~~~~~~r 72 (348)
T 3d31_A 2 IEIESLSRKW-----KNF-SLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPD---SGRILLDGKDVTDLSPEKH 72 (348)
T ss_dssp EEEEEEEEEC-----SSC-EEEEEEEEECTTCEEEEECCCTHHHHHHHHHHHTSSCCS---EEEEEETTEECTTSCHHHH
T ss_pred EEEEEEEEEE-----CCE-EEeeeEEEEcCCCEEEEECCCCccHHHHHHHHHcCCCCC---CcEEEECCEECCCCchhhC
Confidence 6889999988 345 999999999999999999999999999999999999885 9999999987532 135
Q ss_pred eEEEEcCCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHHHHHHHH
Q 007554 129 TAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALE 208 (599)
Q Consensus 129 ~~~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSGGerqRv~ia~a 208 (599)
.+|||+|+..+|+.+||+||+.|+.+.+.. .+. ++++++++.++|++..++.+ ++|||||||||+||||
T Consensus 73 ~ig~v~Q~~~l~~~ltv~enl~~~~~~~~~---~~~---~~v~~~l~~~~L~~~~~~~~-----~~LSgGq~QRvalAra 141 (348)
T 3d31_A 73 DIAFVYQNYSLFPHMNVKKNLEFGMRMKKI---KDP---KRVLDTARDLKIEHLLDRNP-----LTLSGGEQQRVALARA 141 (348)
T ss_dssp TCEEECTTCCCCTTSCHHHHHHHHHHHHCC---CCH---HHHHHHHHHTTCTTTTTSCG-----GGSCHHHHHHHHHHHH
T ss_pred cEEEEecCcccCCCCCHHHHHHHHHHHcCC---CHH---HHHHHHHHHcCCchHhcCCh-----hhCCHHHHHHHHHHHH
Confidence 699999999999999999999998764311 112 67889999999998888754 5799999999999999
Q ss_pred HhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCCchHHHhccCeEEEEeCCeEEEecChhhHH
Q 007554 209 ILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSR-DGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAF 283 (599)
Q Consensus 209 L~~~p~illlDEPtsgLD~~~~~~i~~~L~~l~~-~g~tvi~~~H~p~~~i~~~~D~v~~L~~G~iv~~G~~~~~~ 283 (599)
|+.+|++|||||||+|||+.++.++.+.|+++.+ .|+|+|++|||+ .++..++|++++|++|+++..|+++++.
T Consensus 142 L~~~P~lLLLDEP~s~LD~~~~~~l~~~l~~l~~~~g~tii~vTHd~-~~~~~~adri~vl~~G~i~~~g~~~~~~ 216 (348)
T 3d31_A 142 LVTNPKILLLDEPLSALDPRTQENAREMLSVLHKKNKLTVLHITHDQ-TEARIMADRIAVVMDGKLIQVGKPEEIF 216 (348)
T ss_dssp TTSCCSEEEEESSSTTSCHHHHHHHHHHHHHHHHHTTCEEEEEESCH-HHHHHHCSEEEEESSSCEEEEECHHHHH
T ss_pred HHcCCCEEEEECccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHHHHhCCEEEEEECCEEEEECCHHHHH
Confidence 9999999999999999999999999999999976 599999999995 6788999999999999999999998764
No 21
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=100.00 E-value=6.5e-47 Score=379.36 Aligned_cols=210 Identities=26% Similarity=0.365 Sum_probs=184.2
Q ss_pred EEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC---CcC
Q 007554 52 LTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL---SFG 128 (599)
Q Consensus 52 l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~G~sGsGKSTLl~~L~G~~~~~~~~~G~I~~~g~~~~~---~~~ 128 (599)
++++||++.| ++ +|+|+|+++++ |+++|+||||||||||+|+|+|+++|+ +|+|.++|++... ..+
T Consensus 2 l~~~~l~~~y-----~~--~l~~isl~i~~-e~~~liG~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~~~~~~ 70 (240)
T 2onk_A 2 FLKVRAEKRL-----GN--FRLNVDFEMGR-DYCVLLGPTGAGKSVFLELIAGIVKPD---RGEVRLNGADITPLPPERR 70 (240)
T ss_dssp CEEEEEEEEE-----TT--EEEEEEEEECS-SEEEEECCTTSSHHHHHHHHHTSSCCS---EEEEEETTEECTTSCTTTS
T ss_pred EEEEEEEEEe-----CC--EEeeeEEEECC-EEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEECCcCchhhC
Confidence 6789999988 22 59999999999 999999999999999999999999885 9999999987531 235
Q ss_pred eEEEEcCCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHHHHHHHH
Q 007554 129 TAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALE 208 (599)
Q Consensus 129 ~~~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSGGerqRv~ia~a 208 (599)
.++||+|++.+++.+||+||+.++...+ .....+++++++++.+||.+..++.+ ++|||||||||+||||
T Consensus 71 ~i~~v~q~~~l~~~ltv~enl~~~~~~~-----~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LSgGqkqRv~lAra 140 (240)
T 2onk_A 71 GIGFVPQDYALFPHLSVYRNIAYGLRNV-----ERVERDRRVREMAEKLGIAHLLDRKP-----ARLSGGERQRVALARA 140 (240)
T ss_dssp CCBCCCSSCCCCTTSCHHHHHHTTCTTS-----CHHHHHHHHHHHHHTTTCTTTTTCCG-----GGSCHHHHHHHHHHHH
T ss_pred cEEEEcCCCccCCCCcHHHHHHHHHHHc-----CCchHHHHHHHHHHHcCCHHHhcCCh-----hhCCHHHHHHHHHHHH
Confidence 7999999999999999999999864321 11223567889999999988877754 5799999999999999
Q ss_pred HhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCCchHHHhccCeEEEEeCCeEEEecChhhHH
Q 007554 209 ILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSR-DGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAF 283 (599)
Q Consensus 209 L~~~p~illlDEPtsgLD~~~~~~i~~~L~~l~~-~g~tvi~~~H~p~~~i~~~~D~v~~L~~G~iv~~G~~~~~~ 283 (599)
|+.+|++|||||||+|||+.++..+++.|+++++ +|+|||++||++ .++.++||++++|++|++++.|+++++.
T Consensus 141 l~~~p~lllLDEPts~LD~~~~~~~~~~l~~l~~~~g~tvi~vtHd~-~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 215 (240)
T 2onk_A 141 LVIQPRLLLLDEPLSAVDLKTKGVLMEELRFVQREFDVPILHVTHDL-IEAAMLADEVAVMLNGRIVEKGKLKELF 215 (240)
T ss_dssp HTTCCSSBEEESTTSSCCHHHHHHHHHHHHHHHHHHTCCEEEEESCH-HHHHHHCSEEEEEETTEEEEEECHHHHH
T ss_pred HHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHHHHhCCEEEEEECCEEEEECCHHHHH
Confidence 9999999999999999999999999999999976 489999999995 5788999999999999999999988764
No 22
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=100.00 E-value=8.2e-47 Score=384.58 Aligned_cols=218 Identities=28% Similarity=0.376 Sum_probs=186.5
Q ss_pred eEEEEeEEEEEEccCCcc---cceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC--
Q 007554 51 RLTWKDLTVMVTLSNGET---HNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL-- 125 (599)
Q Consensus 51 ~l~~~~ls~~~~~~~~~~---~~iL~~vs~~i~~Ge~~aI~G~sGsGKSTLl~~L~G~~~~~~~~~G~I~~~g~~~~~-- 125 (599)
.|+++||++.|.. ++ +.+|+|+|+++++||+++|+||||||||||+|+|+|+++|+ +|+|.++|++...
T Consensus 2 ~l~~~~l~~~y~~---~~~~~~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~p~---~G~I~~~g~~~~~~~ 75 (266)
T 2yz2_A 2 RIEVVNVSHIFHR---GTPLEKKALENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLIEPT---SGDVLYDGERKKGYE 75 (266)
T ss_dssp CEEEEEEEEEEST---TSTTCEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCS---EEEEEETTEECCHHH
T ss_pred EEEEEEEEEEecC---CCccccceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCC---CcEEEECCEECchHH
Confidence 3789999999831 12 57999999999999999999999999999999999999885 9999999987531
Q ss_pred CcCeEEEEcCCC-CCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCC--ccccccccCcccCCCCHHHHHH
Q 007554 126 SFGTAAYVTQDD-NLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQ--DCADTVIGNWHLRGISGGERRR 202 (599)
Q Consensus 126 ~~~~~~yv~Q~~-~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~l~L~--~~~~~~vg~~~~~~LSGGerqR 202 (599)
.++.++||+|++ .+++.+||+||+.++.... .+..+.+++++++++.+||. +..++.+ ++||||||||
T Consensus 76 ~~~~i~~v~q~~~~~~~~~tv~enl~~~~~~~----~~~~~~~~~~~~~l~~~gl~~~~~~~~~~-----~~LSgGq~qR 146 (266)
T 2yz2_A 76 IRRNIGIAFQYPEDQFFAERVFDEVAFAVKNF----YPDRDPVPLVKKAMEFVGLDFDSFKDRVP-----FFLSGGEKRR 146 (266)
T ss_dssp HGGGEEEECSSGGGGCCCSSHHHHHHHTTTTT----CTTSCSHHHHHHHHHHTTCCHHHHTTCCG-----GGSCHHHHHH
T ss_pred hhhhEEEEeccchhhcCCCcHHHHHHHHHHhc----CCHHHHHHHHHHHHHHcCcCCcccccCCh-----hhCCHHHHHH
Confidence 235699999995 5667789999999874321 11122345688899999998 7777654 5799999999
Q ss_pred HHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhccCeEEEEeCCeEEEecChhhH
Q 007554 203 VSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAA 282 (599)
Q Consensus 203 v~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~p~~~i~~~~D~v~~L~~G~iv~~G~~~~~ 282 (599)
|+|||+|+.+|++|||||||+|||+.++..+.+.|++++++|+|||++||++ ..+..+||++++|++|++++.|+++++
T Consensus 147 v~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tii~vtHd~-~~~~~~~d~v~~l~~G~i~~~g~~~~~ 225 (266)
T 2yz2_A 147 VAIASVIVHEPDILILDEPLVGLDREGKTDLLRIVEKWKTLGKTVILISHDI-ETVINHVDRVVVLEKGKKVFDGTRMEF 225 (266)
T ss_dssp HHHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCC-TTTGGGCSEEEEEETTEEEEEEEHHHH
T ss_pred HHHHHHHHcCCCEEEEcCccccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCH-HHHHHhCCEEEEEECCEEEEeCCHHHH
Confidence 9999999999999999999999999999999999999987799999999997 467788999999999999999998876
Q ss_pred HH
Q 007554 283 FE 284 (599)
Q Consensus 283 ~~ 284 (599)
..
T Consensus 226 ~~ 227 (266)
T 2yz2_A 226 LE 227 (266)
T ss_dssp HH
T ss_pred hc
Confidence 53
No 23
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=100.00 E-value=9e-47 Score=380.95 Aligned_cols=216 Identities=23% Similarity=0.312 Sum_probs=179.0
Q ss_pred eEEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcC--CCCCCCceeEEEECCEeCCCC--
Q 007554 51 RLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSR--LASNAFLSGTILLNGHKTKLS-- 126 (599)
Q Consensus 51 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~G~sGsGKSTLl~~L~G~--~~~~~~~~G~I~~~g~~~~~~-- 126 (599)
.++++||++.| +++.+|+|+|+++++||+++|+||||||||||+|+|+|+ ++| .+|+|.++|++....
T Consensus 3 ~l~~~~l~~~y-----~~~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~p---~~G~I~~~g~~~~~~~~ 74 (250)
T 2d2e_A 3 QLEIRDLWASI-----DGETILKGVNLVVPKGEVHALMGPNGAGKSTLGKILAGDPEYTV---ERGEILLDGENILELSP 74 (250)
T ss_dssp EEEEEEEEEEE-----TTEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTCTTCEE---EEEEEEETTEECTTSCH
T ss_pred eEEEEeEEEEE-----CCEEEEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCC---CceEEEECCEECCCCCH
Confidence 38999999998 346799999999999999999999999999999999998 556 499999999875321
Q ss_pred ----cCeEEEEcCCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCC-CccccccccCcccCC-CCHHHH
Q 007554 127 ----FGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGL-QDCADTVIGNWHLRG-ISGGER 200 (599)
Q Consensus 127 ----~~~~~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~l~L-~~~~~~~vg~~~~~~-LSGGer 200 (599)
...++||+|++.+++.+||+||+.+.............+..++++++++.+|| .+..++.+ .. ||||||
T Consensus 75 ~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~-----~~~LSgGqk 149 (250)
T 2d2e_A 75 DERARKGLFLAFQYPVEVPGVTIANFLRLALQAKLGREVGVAEFWTKVKKALELLDWDESYLSRYL-----NEGFSGGEK 149 (250)
T ss_dssp HHHHHTTBCCCCCCCC-CCSCBHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHTCCGGGGGSBT-----TCC----HH
T ss_pred HHHHhCcEEEeccCCccccCCCHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHcCCChhHhcCCc-----ccCCCHHHH
Confidence 23489999999999999999999986532111112234445678899999999 47777654 46 999999
Q ss_pred HHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhc-cCeEEEEeCCeEEEecCh
Q 007554 201 RRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFEL-FDRLYLLSGGKTVYFGET 279 (599)
Q Consensus 201 qRv~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~p~~~i~~~-~D~v~~L~~G~iv~~G~~ 279 (599)
|||+|||||+.+|++|||||||+|||+.++..+++.|++++++|+|||++||++ ..+..+ ||++++|++|++++.|++
T Consensus 150 Qrv~iAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tvi~vtHd~-~~~~~~~~d~v~~l~~G~i~~~g~~ 228 (250)
T 2d2e_A 150 KRNEILQLLVLEPTYAVLDETDSGLDIDALKVVARGVNAMRGPNFGALVITHYQ-RILNYIQPDKVHVMMDGRVVATGGP 228 (250)
T ss_dssp HHHHHHHHHHHCCSEEEEECGGGTTCHHHHHHHHHHHHHHCSTTCEEEEECSSS-GGGGTSCCSEEEEEETTEEEEEESH
T ss_pred HHHHHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhcCCEEEEEecCH-HHHHHhcCCEEEEEECCEEEEEeCH
Confidence 999999999999999999999999999999999999999976799999999997 456667 599999999999999998
Q ss_pred h
Q 007554 280 S 280 (599)
Q Consensus 280 ~ 280 (599)
+
T Consensus 229 ~ 229 (250)
T 2d2e_A 229 E 229 (250)
T ss_dssp H
T ss_pred H
Confidence 7
No 24
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=100.00 E-value=1.2e-46 Score=385.44 Aligned_cols=219 Identities=25% Similarity=0.277 Sum_probs=184.4
Q ss_pred eeEEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCC--C--
Q 007554 50 ARLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTK--L-- 125 (599)
Q Consensus 50 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~G~sGsGKSTLl~~L~G~~~~~~~~~G~I~~~g~~~~--~-- 125 (599)
..|+++||++.| +++.+|+|||+++++||+++|+||||||||||+|+|+|+++|+ +|+|.++|++.. .
T Consensus 20 ~~l~~~~l~~~y-----~~~~vL~~isl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~p~---~G~I~~~g~~~~~~~~~ 91 (279)
T 2ihy_A 20 MLIQLDQIGRMK-----QGKTILKKISWQIAKGDKWILYGLNGAGKTTLLNILNAYEPAT---SGTVNLFGKMPGKVGYS 91 (279)
T ss_dssp EEEEEEEEEEEE-----TTEEEEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCS---EEEEEETTBCCC---CC
T ss_pred ceEEEEeEEEEE-----CCEEEEEeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCC---CeEEEECCEEcccccCC
Confidence 359999999998 3467999999999999999999999999999999999999885 999999998653 1
Q ss_pred ---CcCeEEEEcCCCCC--CCCCCHHHHHHHHhhccCC-CCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHH
Q 007554 126 ---SFGTAAYVTQDDNL--IGTLTVRETISYSARLRLP-DKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGE 199 (599)
Q Consensus 126 ---~~~~~~yv~Q~~~l--~~~lTV~e~l~~~~~~~~~-~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSGGe 199 (599)
.++.++||+|++.+ .+.+||+||+.++...... ......+..++++++++.+||.+..++.+ .+|||||
T Consensus 92 ~~~~~~~i~~v~Q~~~~~~~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~-----~~LSgGq 166 (279)
T 2ihy_A 92 AETVRQHIGFVSHSLLEKFQEGERVIDVVISGAFKSIGVYQDIDDEIRNEAHQLLKLVGMSAKAQQYI-----GYLSTGE 166 (279)
T ss_dssp HHHHHTTEEEECHHHHTTSCTTSBHHHHHHTTC---------CCHHHHHHHHHHHHHTTCGGGTTSBG-----GGSCHHH
T ss_pred HHHHcCcEEEEEcCcccccCCCCCHHHHHHhhhhhccccccCCcHHHHHHHHHHHHHcCChhHhcCCh-----hhCCHHH
Confidence 13569999999754 2356999999886321100 01112334567889999999988877755 5699999
Q ss_pred HHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEE--EEEecCCchHHHhccCeEEEEeCCeEEEec
Q 007554 200 RRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTV--IASIHQPSSEVFELFDRLYLLSGGKTVYFG 277 (599)
Q Consensus 200 rqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~L~~l~~~g~tv--i~~~H~p~~~i~~~~D~v~~L~~G~iv~~G 277 (599)
||||+|||||+.+|++|||||||+|||+.++..+++.|++++++|+|| |++||++ .++.++||++++|++|++++.|
T Consensus 167 kqRv~lAraL~~~p~lLlLDEPts~LD~~~~~~l~~~l~~l~~~g~tv~~iivtHd~-~~~~~~~d~v~~l~~G~i~~~g 245 (279)
T 2ihy_A 167 KQRVMIARALMGQPQVLILDEPAAGLDFIARESLLSILDSLSDSYPTLAMIYVTHFI-EEITANFSKILLLKDGQSIQQG 245 (279)
T ss_dssp HHHHHHHHHHHTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHHCTTCEEEEEESCG-GGCCTTCCEEEEEETTEEEEEE
T ss_pred HHHHHHHHHHhCCCCEEEEeCCccccCHHHHHHHHHHHHHHHHCCCEEEEEEEecCH-HHHHHhCCEEEEEECCEEEEEC
Confidence 999999999999999999999999999999999999999997668999 9999996 5677899999999999999999
Q ss_pred ChhhH
Q 007554 278 ETSAA 282 (599)
Q Consensus 278 ~~~~~ 282 (599)
+++++
T Consensus 246 ~~~~~ 250 (279)
T 2ihy_A 246 AVEDI 250 (279)
T ss_dssp EHHHH
T ss_pred CHHHH
Confidence 98765
No 25
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=100.00 E-value=1.7e-45 Score=372.12 Aligned_cols=210 Identities=27% Similarity=0.334 Sum_probs=181.7
Q ss_pred eEEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCcCeE
Q 007554 51 RLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLSFGTA 130 (599)
Q Consensus 51 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~G~sGsGKSTLl~~L~G~~~~~~~~~G~I~~~g~~~~~~~~~~ 130 (599)
.|+++||++.+. .++.+|+|+|+++++||+++|+||||||||||+|+|+|+++|+ +|+|.+ .+.+
T Consensus 4 ~l~i~~l~~~y~----~~~~vl~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~---~G~I~~--------~~~i 68 (253)
T 2nq2_C 4 ALSVENLGFYYQ----AENFLFQQLNFDLNKGDILAVLGQNGCGKSTLLDLLLGIHRPI---QGKIEV--------YQSI 68 (253)
T ss_dssp EEEEEEEEEEET----TTTEEEEEEEEEEETTCEEEEECCSSSSHHHHHHHHTTSSCCS---EEEEEE--------CSCE
T ss_pred eEEEeeEEEEeC----CCCeEEEEEEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CcEEEE--------eccE
Confidence 489999999982 1467999999999999999999999999999999999999885 999982 2569
Q ss_pred EEEcCCCCCCCCCCHHHHHHHHhhccCC-CCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHHHHHHHHH
Q 007554 131 AYVTQDDNLIGTLTVRETISYSARLRLP-DKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEI 209 (599)
Q Consensus 131 ~yv~Q~~~l~~~lTV~e~l~~~~~~~~~-~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSGGerqRv~ia~aL 209 (599)
+||+|++.+++.+||+||+.++...... ......+.+++++++++.+||.+..++.+ .+|||||||||+|||||
T Consensus 69 ~~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LSgGq~qrv~lAraL 143 (253)
T 2nq2_C 69 GFVPQFFSSPFAYSVLDIVLMGRSTHINTFAKPKSHDYQVAMQALDYLNLTHLAKREF-----TSLSGGQRQLILIARAI 143 (253)
T ss_dssp EEECSCCCCSSCCBHHHHHHGGGGGGSCTTCCCCHHHHHHHHHHHHHTTCGGGTTSBG-----GGSCHHHHHHHHHHHHH
T ss_pred EEEcCCCccCCCCCHHHHHHHhhhhhcccccCCCHHHHHHHHHHHHHcCChHHhcCCh-----hhCCHHHHHHHHHHHHH
Confidence 9999999999899999999987532111 00112334567889999999998877754 57999999999999999
Q ss_pred hhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCchHHHhccCeEEEEeCCeEEEecChhhH
Q 007554 210 LMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRD-GRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAA 282 (599)
Q Consensus 210 ~~~p~illlDEPtsgLD~~~~~~i~~~L~~l~~~-g~tvi~~~H~p~~~i~~~~D~v~~L~~G~iv~~G~~~~~ 282 (599)
+.+|++|||||||+|||+.++..+.+.|++++++ |+|||++||++ +.+.++||++++|++|+ ++.|+++++
T Consensus 144 ~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~-~~~~~~~d~v~~l~~G~-~~~g~~~~~ 215 (253)
T 2nq2_C 144 ASECKLILLDEPTSALDLANQDIVLSLLIDLAQSQNMTVVFTTHQP-NQVVAIANKTLLLNKQN-FKFGETRNI 215 (253)
T ss_dssp HTTCSEEEESSSSTTSCHHHHHHHHHHHHHHHHTSCCEEEEEESCH-HHHHHHCSEEEEEETTE-EEEEEHHHH
T ss_pred HcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCH-HHHHHhCCEEEEEeCCe-EecCCHHHH
Confidence 9999999999999999999999999999999876 99999999995 57788999999999999 999988765
No 26
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=100.00 E-value=1.6e-45 Score=375.29 Aligned_cols=221 Identities=28% Similarity=0.343 Sum_probs=185.4
Q ss_pred eEEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCC--CCCCCceeEEEECCEeCCCC--
Q 007554 51 RLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRL--ASNAFLSGTILLNGHKTKLS-- 126 (599)
Q Consensus 51 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~G~sGsGKSTLl~~L~G~~--~~~~~~~G~I~~~g~~~~~~-- 126 (599)
.|+++||++.| +++.+|+|||+++++||+++|+||||||||||+|+|+|+. +| .+|+|.++|++....
T Consensus 20 ~l~~~~l~~~y-----~~~~vl~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~Gl~~~~p---~~G~I~~~g~~i~~~~~ 91 (267)
T 2zu0_C 20 MLSIKDLHVSV-----EDKAILRGLSLDVHPGEVHAIMGPNGSGKSTLSATLAGREDYEV---TGGTVEFKGKDLLALSP 91 (267)
T ss_dssp CEEEEEEEEEE-----TTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTCTTCEE---EEEEEEETTEEGGGSCH
T ss_pred eEEEEeEEEEE-----CCEEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCC---CCeEEEECCEECCcCCH
Confidence 49999999998 3467999999999999999999999999999999999984 44 499999999875321
Q ss_pred ----cCeEEEEcCCCCCCCCCCHHHHHHHHhh-cc---CCCCCCHHHHHHHHHHHHHHcCCC-ccccccccCcccCCCCH
Q 007554 127 ----FGTAAYVTQDDNLIGTLTVRETISYSAR-LR---LPDKMPWSEKRTLVERTIIEMGLQ-DCADTVIGNWHLRGISG 197 (599)
Q Consensus 127 ----~~~~~yv~Q~~~l~~~lTV~e~l~~~~~-~~---~~~~~~~~~~~~~v~~~l~~l~L~-~~~~~~vg~~~~~~LSG 197 (599)
...++||+|++.+++.+||+||+.+... .+ .....+..+..++++++++.+||. +..++.++ .+|||
T Consensus 92 ~~~~~~~i~~v~Q~~~l~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~----~~LSg 167 (267)
T 2zu0_C 92 EDRAGEGIFMAFQYPVEIPGVSNQFFLQTALNAVRSYRGQETLDRFDFQDLMEEKIALLKMPEDLLTRSVN----VGFSG 167 (267)
T ss_dssp HHHHHHTEEEECSSCCCCTTCBHHHHHHHHHHHHHHGGGCCCCCHHHHHHHHHHHHHHTTCCTTTTTSBTT----TTCCH
T ss_pred HHHhhCCEEEEccCccccccccHHHHHHHHHHhhhhhhccccCCHHHHHHHHHHHHHHcCCChhHhcCCcc----cCCCH
Confidence 1248999999999999999999987542 11 111123444557789999999996 45665432 14999
Q ss_pred HHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhc-cCeEEEEeCCeEEEe
Q 007554 198 GERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFEL-FDRLYLLSGGKTVYF 276 (599)
Q Consensus 198 GerqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~p~~~i~~~-~D~v~~L~~G~iv~~ 276 (599)
||||||+|||||+.+|++|||||||+|||+.++..+++.|++++++|+|||++||++ ..+..+ ||++++|++|++++.
T Consensus 168 Gq~QRv~iAraL~~~p~lLlLDEPts~LD~~~~~~l~~~l~~l~~~g~tviivtHd~-~~~~~~~~d~v~~l~~G~i~~~ 246 (267)
T 2zu0_C 168 GEKKRNDILQMAVLEPELCILDESDSGLDIDALKVVADGVNSLRDGKRSFIIVTHYQ-RILDYIKPDYVHVLYQGRIVKS 246 (267)
T ss_dssp HHHHHHHHHHHHHHCCSEEEEESTTTTCCHHHHHHHHHHHHTTCCSSCEEEEECSSG-GGGGTSCCSEEEEEETTEEEEE
T ss_pred HHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEeeCH-HHHHhhcCCEEEEEECCEEEEE
Confidence 999999999999999999999999999999999999999999976799999999996 456565 899999999999999
Q ss_pred cChhhHHH
Q 007554 277 GETSAAFE 284 (599)
Q Consensus 277 G~~~~~~~ 284 (599)
|+++++..
T Consensus 247 g~~~~~~~ 254 (267)
T 2zu0_C 247 GDFTLVKQ 254 (267)
T ss_dssp ECTTHHHH
T ss_pred cCHHHHhh
Confidence 99887653
No 27
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=100.00 E-value=6.6e-46 Score=378.76 Aligned_cols=217 Identities=29% Similarity=0.385 Sum_probs=178.5
Q ss_pred eEEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC-----
Q 007554 51 RLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL----- 125 (599)
Q Consensus 51 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~G~sGsGKSTLl~~L~G~~~~~~~~~G~I~~~g~~~~~----- 125 (599)
.|+++||++.|.. +..+.+|+|||+++++||+++|+||||||||||||+|+|+++|+ +|+|.++|++...
T Consensus 16 ~l~~~~l~~~y~~--~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~~p~---~G~I~~~g~~i~~~~~~~ 90 (271)
T 2ixe_A 16 LVKFQDVSFAYPN--HPNVQVLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQPT---GGKVLLDGEPLVQYDHHY 90 (271)
T ss_dssp CEEEEEEEECCTT--CTTSCCEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCS---EEEEEETTEEGGGBCHHH
T ss_pred eEEEEEEEEEeCC--CCCceeeEeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CCEEEECCEEcccCCHHH
Confidence 4999999998721 01267999999999999999999999999999999999999885 9999999987532
Q ss_pred CcCeEEEEcCCCCCCCCCCHHHHHHHHhhccCCCCCCHHH-----HHHHHHHHHHHc--CCCccccccccCcccCCCCHH
Q 007554 126 SFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSE-----KRTLVERTIIEM--GLQDCADTVIGNWHLRGISGG 198 (599)
Q Consensus 126 ~~~~~~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~-----~~~~v~~~l~~l--~L~~~~~~~vg~~~~~~LSGG 198 (599)
.++.++||+|++.+++ .||+||+.++.... . ...+ ....++++++.+ ||.+..+. .+.+||||
T Consensus 91 ~~~~i~~v~Q~~~l~~-~tv~enl~~~~~~~---~-~~~~~~~~~~~~~~~~~l~~l~~gl~~~~~~-----~~~~LSgG 160 (271)
T 2ixe_A 91 LHTQVAAVGQEPLLFG-RSFRENIAYGLTRT---P-TMEEITAVAMESGAHDFISGFPQGYDTEVGE-----TGNQLSGG 160 (271)
T ss_dssp HHHHEEEECSSCCCCS-SBHHHHHHTTCSSC---C-CHHHHHHHHHHHTCHHHHHHSTTGGGSBCCG-----GGTTSCHH
T ss_pred HhccEEEEecCCcccc-ccHHHHHhhhcccC---C-hHHHHHHHHHHHhHHHHHHhhhcchhhhhcC-----CcCCCCHH
Confidence 1246999999999887 49999999864211 1 1111 122345677777 56555554 45679999
Q ss_pred HHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCCchHHHhccCeEEEEeCCeEEEec
Q 007554 199 ERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSR-DGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFG 277 (599)
Q Consensus 199 erqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~L~~l~~-~g~tvi~~~H~p~~~i~~~~D~v~~L~~G~iv~~G 277 (599)
|||||+|||||+.+|++|||||||+|||+.++..+++.|+++++ +|+|||++||++ ..+ ..||++++|++|++++.|
T Consensus 161 q~QRv~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~~~g~tviivtHd~-~~~-~~~d~v~~l~~G~i~~~g 238 (271)
T 2ixe_A 161 QRQAVALARALIRKPRLLILDNATSALDAGNQLRVQRLLYESPEWASRTVLLITQQL-SLA-ERAHHILFLKEGSVCEQG 238 (271)
T ss_dssp HHHHHHHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHCTTTTTSEEEEECSCH-HHH-TTCSEEEEEETTEEEEEE
T ss_pred HHHHHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHHHHhhcCCEEEEEeCCH-HHH-HhCCEEEEEECCEEEEEC
Confidence 99999999999999999999999999999999999999999865 589999999996 445 459999999999999999
Q ss_pred ChhhHHH
Q 007554 278 ETSAAFE 284 (599)
Q Consensus 278 ~~~~~~~ 284 (599)
+++++..
T Consensus 239 ~~~~l~~ 245 (271)
T 2ixe_A 239 THLQLME 245 (271)
T ss_dssp CHHHHHH
T ss_pred CHHHHHh
Confidence 9887653
No 28
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=100.00 E-value=2.3e-45 Score=369.83 Aligned_cols=214 Identities=27% Similarity=0.452 Sum_probs=179.6
Q ss_pred eeEEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCC---
Q 007554 50 ARLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLS--- 126 (599)
Q Consensus 50 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~G~sGsGKSTLl~~L~G~~~~~~~~~G~I~~~g~~~~~~--- 126 (599)
..++++||++.|. ++++.+|+|+|+++++||+++|+||||||||||+|+|+|+++|+ +|+|.++|++....
T Consensus 6 ~~~~~~~l~~~y~---~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~---~G~I~i~g~~~~~~~~~ 79 (247)
T 2ff7_A 6 HDITFRNIRFRYK---PDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPE---NGQVLIDGHDLALADPN 79 (247)
T ss_dssp EEEEEEEEEEESS---TTSCEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCS---EEEEEETTEETTTSCHH
T ss_pred CceeEEEEEEEeC---CCCcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CcEEEECCEEhhhCCHH
Confidence 4689999999872 12367999999999999999999999999999999999999885 99999999875421
Q ss_pred --cCeEEEEcCCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccc-------cccCcccCCCCH
Q 007554 127 --FGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADT-------VIGNWHLRGISG 197 (599)
Q Consensus 127 --~~~~~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~l~L~~~~~~-------~vg~~~~~~LSG 197 (599)
++.++||+|++.+++ .||+||+.++.. ... .+++.++++.+++.+..++ .++. .+..|||
T Consensus 80 ~~~~~i~~v~Q~~~l~~-~tv~enl~~~~~-----~~~----~~~~~~~l~~~~l~~~~~~~~~gl~~~~~~-~~~~LSg 148 (247)
T 2ff7_A 80 WLRRQVGVVLQDNVLLN-RSIIDNISLANP-----GMS----VEKVIYAAKLAGAHDFISELREGYNTIVGE-QGAGLSG 148 (247)
T ss_dssp HHHHHEEEECSSCCCTT-SBHHHHHTTTCT-----TCC----HHHHHHHHHHHTCHHHHHTSTTGGGCBCST-TTTCCCH
T ss_pred HHHhcEEEEeCCCcccc-ccHHHHHhccCC-----CCC----HHHHHHHHHHhChHHHHHhCcchhhhhhhC-CCCCCCH
Confidence 246999999998887 599999987521 111 2345677777888654433 3332 4678999
Q ss_pred HHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhccCeEEEEeCCeEEEec
Q 007554 198 GERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFG 277 (599)
Q Consensus 198 GerqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~p~~~i~~~~D~v~~L~~G~iv~~G 277 (599)
||||||+|||||+.+|++|||||||+|||+.++..+++.|++++ +|+|||++||++. .+ +.||++++|++|++++.|
T Consensus 149 Gq~qRv~iAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~-~g~tviivtH~~~-~~-~~~d~v~~l~~G~i~~~g 225 (247)
T 2ff7_A 149 GQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNMHKIC-KGRTVIIIAHRLS-TV-KNADRIIVMEKGKIVEQG 225 (247)
T ss_dssp HHHHHHHHHHHHTTCCSEEEECCCCSCCCHHHHHHHHHHHHHHH-TTSEEEEECSSGG-GG-TTSSEEEEEETTEEEEEE
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHc-CCCEEEEEeCCHH-HH-HhCCEEEEEECCEEEEEC
Confidence 99999999999999999999999999999999999999999995 5899999999974 44 569999999999999999
Q ss_pred ChhhHH
Q 007554 278 ETSAAF 283 (599)
Q Consensus 278 ~~~~~~ 283 (599)
+++++.
T Consensus 226 ~~~~l~ 231 (247)
T 2ff7_A 226 KHKELL 231 (247)
T ss_dssp CHHHHH
T ss_pred CHHHHH
Confidence 987764
No 29
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=100.00 E-value=3.7e-45 Score=368.50 Aligned_cols=205 Identities=27% Similarity=0.384 Sum_probs=180.4
Q ss_pred eEEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCC----
Q 007554 51 RLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLS---- 126 (599)
Q Consensus 51 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~G~sGsGKSTLl~~L~G~~~~~~~~~G~I~~~g~~~~~~---- 126 (599)
.++++||++. .+|+|+|+++++||+++|+||||||||||||+|+|+++| . |+|.++|++....
T Consensus 4 ~l~~~~l~~~---------~vl~~vsl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~p---~-G~i~~~g~~~~~~~~~~ 70 (249)
T 2qi9_C 4 VMQLQDVAES---------TRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTSG---K-GSIQFAGQPLEAWSATK 70 (249)
T ss_dssp EEEEEEEEET---------TTEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCC---E-EEEEETTEEGGGSCHHH
T ss_pred EEEEEceEEE---------EEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCC---C-eEEEECCEECCcCCHHH
Confidence 4889999873 589999999999999999999999999999999999887 5 9999999875321
Q ss_pred -cCeEEEEcCCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHHHHH
Q 007554 127 -FGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSI 205 (599)
Q Consensus 127 -~~~~~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSGGerqRv~i 205 (599)
++.++||+|++.+++.+||+||+.++.. .. .. +++++++++.+||.+..++.+ .+||||||||++|
T Consensus 71 ~~~~i~~v~q~~~~~~~~tv~e~l~~~~~---~~-~~----~~~~~~~l~~~~l~~~~~~~~-----~~LSgGq~qrv~l 137 (249)
T 2qi9_C 71 LALHRAYLSQQQTPPFATPVWHYLTLHQH---DK-TR----TELLNDVAGALALDDKLGRST-----NQLSGGEWQRVRL 137 (249)
T ss_dssp HHHHEEEECSCCCCCTTCBHHHHHHTTCS---ST-TC----HHHHHHHHHHTTCGGGTTSBG-----GGCCHHHHHHHHH
T ss_pred HhceEEEECCCCccCCCCcHHHHHHHhhc---cC-Cc----HHHHHHHHHHcCChhHhcCCh-----hhCCHHHHHHHHH
Confidence 2469999999999999999999987521 11 11 456888999999988877654 5799999999999
Q ss_pred HHHHhhCCC-------EEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhccCeEEEEeCCeEEEecC
Q 007554 206 ALEILMRPR-------LLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGE 278 (599)
Q Consensus 206 a~aL~~~p~-------illlDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~p~~~i~~~~D~v~~L~~G~iv~~G~ 278 (599)
||+|+.+|+ +|||||||+|||+.++..+.+.|++++++|+|||++||++ +.+.++||++++|++|++++.|+
T Consensus 138 AraL~~~p~~~~~~~~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tviivtHd~-~~~~~~~d~v~~l~~G~i~~~g~ 216 (249)
T 2qi9_C 138 AAVVLQITPQANPAGQLLLLDEPMNSLDVAQQSALDKILSALSQQGLAIVMSSHDL-NHTLRHAHRAWLLKGGKMLASGR 216 (249)
T ss_dssp HHHHHHHCTTTCTTCCEEEESSTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCH-HHHHHHCSEEEEEETTEEEEEEE
T ss_pred HHHHHcCCCcCCCCCeEEEEECCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCH-HHHHHhCCEEEEEECCEEEEeCC
Confidence 999999999 9999999999999999999999999987799999999995 56778999999999999999998
Q ss_pred hhhH
Q 007554 279 TSAA 282 (599)
Q Consensus 279 ~~~~ 282 (599)
++++
T Consensus 217 ~~~~ 220 (249)
T 2qi9_C 217 REEV 220 (249)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 8765
No 30
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=100.00 E-value=1.8e-45 Score=369.95 Aligned_cols=212 Identities=26% Similarity=0.431 Sum_probs=179.6
Q ss_pred EEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC-----C
Q 007554 52 LTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL-----S 126 (599)
Q Consensus 52 l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~G~sGsGKSTLl~~L~G~~~~~~~~~G~I~~~g~~~~~-----~ 126 (599)
|+++||++.|. +++.+|+|+|+++++||+++|+||||||||||+|+|+|+++|. +|+|.++|++... .
T Consensus 2 l~~~~l~~~y~----~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~~~~~~ 74 (243)
T 1mv5_A 2 LSARHVDFAYD----DSEQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPT---AGEITIDGQPIDNISLENW 74 (243)
T ss_dssp EEEEEEEECSS----SSSCSEEEEEEEECTTEEEEEECCTTSSHHHHHHHHTTSSCCS---BSCEEETTEESTTTSCSCC
T ss_pred EEEEEEEEEeC----CCCceEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CcEEEECCEEhhhCCHHHH
Confidence 78999998872 2467999999999999999999999999999999999999885 9999999987531 2
Q ss_pred cCeEEEEcCCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCcccccc-------ccCcccCCCCHHH
Q 007554 127 FGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTV-------IGNWHLRGISGGE 199 (599)
Q Consensus 127 ~~~~~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~-------vg~~~~~~LSGGe 199 (599)
++.++||+|++.+++. ||+||+.++.. + ... +++++++++.+++.+..++. ++ ..+.+|||||
T Consensus 75 ~~~i~~v~q~~~l~~~-tv~enl~~~~~---~-~~~----~~~~~~~l~~~~l~~~~~~~~~gl~~~~~-~~~~~LSgGq 144 (243)
T 1mv5_A 75 RSQIGFVSQDSAIMAG-TIRENLTYGLE---G-DYT----DEDLWQVLDLAFARSFVENMPDQLNTEVG-ERGVKISGGQ 144 (243)
T ss_dssp TTTCCEECCSSCCCCE-EHHHHTTSCTT---S-CSC----HHHHHHHHHHHTCTTTTTSSTTGGGCEES-TTSBCCCHHH
T ss_pred HhhEEEEcCCCccccc-cHHHHHhhhcc---C-CCC----HHHHHHHHHHhChHHHHHhCccchhchhc-cCcCcCCHHH
Confidence 3569999999998875 99999987521 1 111 23467788888987765543 22 2467899999
Q ss_pred HHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhccCeEEEEeCCeEEEecCh
Q 007554 200 RRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGET 279 (599)
Q Consensus 200 rqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~p~~~i~~~~D~v~~L~~G~iv~~G~~ 279 (599)
||||+|||+|+.+|++|||||||+|||+.++..+++.|++++ +|+|||++||++ ..+ ..||++++|++|++++.|++
T Consensus 145 ~qrv~lAral~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~-~~~tvi~vtH~~-~~~-~~~d~v~~l~~G~i~~~g~~ 221 (243)
T 1mv5_A 145 RQRLAIARAFLRNPKILMLDEATASLDSESESMVQKALDSLM-KGRTTLVIAHRL-STI-VDADKIYFIEKGQITGSGKH 221 (243)
T ss_dssp HHHHHHHHHHHHCCSEEEEECCSCSSCSSSCCHHHHHHHHHH-TTSEEEEECCSH-HHH-HHCSEEEEEETTEECCCSCH
T ss_pred HHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHhc-CCCEEEEEeCCh-HHH-HhCCEEEEEECCEEEEeCCH
Confidence 999999999999999999999999999999999999999997 689999999996 444 56999999999999999998
Q ss_pred hhHH
Q 007554 280 SAAF 283 (599)
Q Consensus 280 ~~~~ 283 (599)
+++.
T Consensus 222 ~~~~ 225 (243)
T 1mv5_A 222 NELV 225 (243)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 8764
No 31
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=100.00 E-value=6.5e-45 Score=409.17 Aligned_cols=247 Identities=26% Similarity=0.311 Sum_probs=199.3
Q ss_pred hhhhhhhhHHHhhhcCCCCCccccCCCCCchhhHHhhhhccccCCCcceeEEEEeEEEEEEccCCcccceeeceEEEEeC
Q 007554 2 RDSAASNVIMEIEASKPAGNSIVVGGLSPLSETIWKEKINTEFSGDVSARLTWKDLTVMVTLSNGETHNVLEGLTGYAEP 81 (599)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~ 81 (599)
++.+|.+|+.++++.+|..+.... ..+ .......++++|+++++.. +++++|+|+|+++++
T Consensus 306 ~~~~s~~ri~~~l~~~~~~~~~~~-------------~~~---~~~~~~~i~~~~v~~~y~~---~~~~~l~~isl~i~~ 366 (578)
T 4a82_A 306 QSFASMDRVFQLIDEDYDIKNGVG-------------AQP---IEIKQGRIDIDHVSFQYND---NEAPILKDINLSIEK 366 (578)
T ss_dssp HHHHHHHHHHHHHTCCCSSCCCTT-------------CCC---CCCCSCCEEEEEEEECSCS---SSCCSEEEEEEEECT
T ss_pred HHHHHHHHHHHHHcCCCcccCCCC-------------ccc---cCCCCCeEEEEEEEEEcCC---CCCcceeeeEEEECC
Confidence 578899999999987766432000 000 0012235999999998842 346799999999999
Q ss_pred CeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCC-----cCeEEEEcCCCCCCCCCCHHHHHHHHhhcc
Q 007554 82 GTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLS-----FGTAAYVTQDDNLIGTLTVRETISYSARLR 156 (599)
Q Consensus 82 Ge~~aI~G~sGsGKSTLl~~L~G~~~~~~~~~G~I~~~g~~~~~~-----~~~~~yv~Q~~~l~~~lTV~e~l~~~~~~~ 156 (599)
||++||+||||||||||+|+|+|+++|+ +|+|.+||++.... ++.++||+|++.+|+. ||+||+.++..
T Consensus 367 G~~~~ivG~sGsGKSTll~~l~g~~~p~---~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~-tv~eni~~~~~-- 440 (578)
T 4a82_A 367 GETVAFVGMSGGGKSTLINLIPRFYDVT---SGQILIDGHNIKDFLTGSLRNQIGLVQQDNILFSD-TVKENILLGRP-- 440 (578)
T ss_dssp TCEEEEECSTTSSHHHHHTTTTTSSCCS---EEEEEETTEEGGGSCHHHHHHTEEEECSSCCCCSS-BHHHHHGGGCS--
T ss_pred CCEEEEECCCCChHHHHHHHHhcCCCCC---CcEEEECCEEhhhCCHHHHhhheEEEeCCCccCcc-cHHHHHhcCCC--
Confidence 9999999999999999999999999985 99999999985421 3569999999999987 99999988632
Q ss_pred CCCCCCHHHHHHHHHHHHHHcC-------CCccccccccCcccCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHH
Q 007554 157 LPDKMPWSEKRTLVERTIIEMG-------LQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAA 229 (599)
Q Consensus 157 ~~~~~~~~~~~~~v~~~l~~l~-------L~~~~~~~vg~~~~~~LSGGerqRv~ia~aL~~~p~illlDEPtsgLD~~~ 229 (599)
. ... +.+.+.++..+ +.+..||.+|+ .+.+||||||||++|||||+++|++|+|||||||||+.+
T Consensus 441 --~-~~~----~~~~~~~~~~~~~~~~~~lp~g~~t~~~~-~g~~LSgGq~Qrv~lAral~~~p~illlDEpts~LD~~~ 512 (578)
T 4a82_A 441 --T-ATD----EEVVEAAKMANAHDFIMNLPQGYDTEVGE-RGVKLSGGQKQRLSIARIFLNNPPILILDEATSALDLES 512 (578)
T ss_dssp --S-CCH----HHHHHHHHHTTCHHHHHTSTTGGGCBCCG-GGTTSCHHHHHHHHHHHHHHHCCSEEEEESTTTTCCHHH
T ss_pred --C-CCH----HHHHHHHHHhCcHHHHHhCcchhhhhhcc-CCCcCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHH
Confidence 1 122 22344444444 44567888886 567899999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhCCCEEEEEecCCchHHHhccCeEEEEeCCeEEEecChhhHHH
Q 007554 230 AFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAFE 284 (599)
Q Consensus 230 ~~~i~~~L~~l~~~g~tvi~~~H~p~~~i~~~~D~v~~L~~G~iv~~G~~~~~~~ 284 (599)
+..+.+.|+++. +++|+|+++|+++ .+ +.||+|++|++|++++.|+++++.+
T Consensus 513 ~~~i~~~l~~~~-~~~t~i~itH~l~-~~-~~~d~i~~l~~G~i~~~g~~~el~~ 564 (578)
T 4a82_A 513 ESIIQEALDVLS-KDRTTLIVAHRLS-TI-THADKIVVIENGHIVETGTHRELIA 564 (578)
T ss_dssp HHHHHHHHHHHT-TTSEEEEECSSGG-GT-TTCSEEEEEETTEEEEEECHHHHHH
T ss_pred HHHHHHHHHHHc-CCCEEEEEecCHH-HH-HcCCEEEEEECCEEEEECCHHHHHh
Confidence 999999999885 4799999999975 34 6699999999999999999988754
No 32
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=100.00 E-value=2.7e-44 Score=364.80 Aligned_cols=213 Identities=28% Similarity=0.398 Sum_probs=176.0
Q ss_pred eEEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC-----
Q 007554 51 RLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL----- 125 (599)
Q Consensus 51 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~G~sGsGKSTLl~~L~G~~~~~~~~~G~I~~~g~~~~~----- 125 (599)
.|+++||++.|.. ...+.+|+|+|+++++||+++|+||||||||||+|+|+|++++ +|+|.++|++...
T Consensus 17 ~l~i~~l~~~y~~--~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~----~G~I~i~g~~i~~~~~~~ 90 (260)
T 2ghi_A 17 NIEFSDVNFSYPK--QTNHRTLKSINFFIPSGTTCALVGHTGSGKSTIAKLLYRFYDA----EGDIKIGGKNVNKYNRNS 90 (260)
T ss_dssp CEEEEEEEECCTT--CCSSCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCC----EEEEEETTEEGGGBCHHH
T ss_pred eEEEEEEEEEeCC--CCcCceeEeeEEEECCCCEEEEECCCCCCHHHHHHHHhccCCC----CeEEEECCEEhhhcCHHH
Confidence 4999999998831 1125699999999999999999999999999999999999864 7999999987532
Q ss_pred CcCeEEEEcCCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCC-------ccccccccCcccCCCCHH
Q 007554 126 SFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQ-------DCADTVIGNWHLRGISGG 198 (599)
Q Consensus 126 ~~~~~~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~l~L~-------~~~~~~vg~~~~~~LSGG 198 (599)
.++.++||+|++.+++ .||+||+.++.. .... +.+.+.++.+++. +..++.++. .+..||||
T Consensus 91 ~~~~i~~v~Q~~~l~~-~tv~enl~~~~~-----~~~~----~~~~~~l~~~~l~~~~~~l~~~~~~~~~~-~~~~LSgG 159 (260)
T 2ghi_A 91 IRSIIGIVPQDTILFN-ETIKYNILYGKL-----DATD----EEVIKATKSAQLYDFIEALPKKWDTIVGN-KGMKLSGG 159 (260)
T ss_dssp HHTTEEEECSSCCCCS-EEHHHHHHTTCT-----TCCH----HHHHHHHHHTTCHHHHHTSTTGGGCEESS-SSBCCCHH
T ss_pred HhccEEEEcCCCcccc-cCHHHHHhccCC-----CCCH----HHHHHHHHHhCCHHHHHhccccccccccC-CcCcCCHH
Confidence 1356999999999886 599999987521 1111 2345566666653 344555544 56789999
Q ss_pred HHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhccCeEEEEeCCeEEEecC
Q 007554 199 ERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGE 278 (599)
Q Consensus 199 erqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~p~~~i~~~~D~v~~L~~G~iv~~G~ 278 (599)
|||||+|||||+.+|++|||||||+|||+.++..+.+.|+++++ |+|||++||++. .+ +.||++++|++|++++.|+
T Consensus 160 qkqRv~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~l~~-~~tviivtH~~~-~~-~~~d~i~~l~~G~i~~~g~ 236 (260)
T 2ghi_A 160 ERQRIAIARCLLKDPKIVIFDEATSSLDSKTEYLFQKAVEDLRK-NRTLIIIAHRLS-TI-SSAESIILLNKGKIVEKGT 236 (260)
T ss_dssp HHHHHHHHHHHHHCCSEEEEECCCCTTCHHHHHHHHHHHHHHTT-TSEEEEECSSGG-GS-TTCSEEEEEETTEEEEEEC
T ss_pred HHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHhcC-CCEEEEEcCCHH-HH-HhCCEEEEEECCEEEEECC
Confidence 99999999999999999999999999999999999999999964 899999999974 44 5699999999999999999
Q ss_pred hhhHH
Q 007554 279 TSAAF 283 (599)
Q Consensus 279 ~~~~~ 283 (599)
++++.
T Consensus 237 ~~~l~ 241 (260)
T 2ghi_A 237 HKDLL 241 (260)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 88764
No 33
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=100.00 E-value=5.2e-45 Score=410.38 Aligned_cols=247 Identities=24% Similarity=0.389 Sum_probs=198.7
Q ss_pred hhhhhhhhHHHhhhcCCCCCccccCCCCCchhhHHhhhhccccCCCcceeEEEEeEEEEEEccCCcccceeeceEEEEeC
Q 007554 2 RDSAASNVIMEIEASKPAGNSIVVGGLSPLSETIWKEKINTEFSGDVSARLTWKDLTVMVTLSNGETHNVLEGLTGYAEP 81 (599)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~ 81 (599)
++.+|++|+.++++.+|..+... .+ . .. ......++++|++++|.. +++++|+|+|+++++
T Consensus 308 ~~~~s~~ri~~~l~~~~~~~~~~----~~---------~--~~-~~~~~~i~~~~v~~~y~~---~~~~~l~~isl~i~~ 368 (587)
T 3qf4_A 308 RASASAKRVLEVLNEKPAIEEAD----NA---------L--AL-PNVEGSVSFENVEFRYFE---NTDPVLSGVNFSVKP 368 (587)
T ss_dssp HHHHHHHHHHHHHHCCCSCCCCT----TC---------B--CC-SCCCCCEEEEEEEECSSS---SSCCSEEEEEEEECT
T ss_pred HHHHHHHHHHHHHcCCCccCCCC----Cc---------c--cc-CCCCCcEEEEEEEEEcCC---CCCcceeceEEEEcC
Confidence 57889999999998777643200 00 0 00 012235999999998842 346799999999999
Q ss_pred CeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC-----CcCeEEEEcCCCCCCCCCCHHHHHHHHhhcc
Q 007554 82 GTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL-----SFGTAAYVTQDDNLIGTLTVRETISYSARLR 156 (599)
Q Consensus 82 Ge~~aI~G~sGsGKSTLl~~L~G~~~~~~~~~G~I~~~g~~~~~-----~~~~~~yv~Q~~~l~~~lTV~e~l~~~~~~~ 156 (599)
||++||+||||||||||+|+|+|+++|+ +|+|.+||++... .++.++||+|++.+|+. ||+||+.++..
T Consensus 369 Ge~~~ivG~sGsGKSTll~~l~g~~~~~---~G~i~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~-tv~eni~~~~~-- 442 (587)
T 3qf4_A 369 GSLVAVLGETGSGKSTLMNLIPRLIDPE---RGRVEVDELDVRTVKLKDLRGHISAVPQETVLFSG-TIKENLKWGRE-- 442 (587)
T ss_dssp TCEEEEECSSSSSHHHHHHTTTTSSCCS---EEEEEESSSBGGGBCHHHHHHHEEEECSSCCCCSE-EHHHHHTTTCS--
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCccCC---CcEEEECCEEcccCCHHHHHhheEEECCCCcCcCc-cHHHHHhccCC--
Confidence 9999999999999999999999999985 9999999987542 13579999999999976 99999987632
Q ss_pred CCCCCCHHHHHHHHHHHHHHc-------CCCccccccccCcccCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHH
Q 007554 157 LPDKMPWSEKRTLVERTIIEM-------GLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAA 229 (599)
Q Consensus 157 ~~~~~~~~~~~~~v~~~l~~l-------~L~~~~~~~vg~~~~~~LSGGerqRv~ia~aL~~~p~illlDEPtsgLD~~~ 229 (599)
..+.++ +.+.++.. .+++..|+.+|+ .+.+||||||||++|||||+++|++|+||||||+||+.+
T Consensus 443 ---~~~~~~----~~~~~~~~~~~~~i~~l~~g~~~~~~~-~~~~LSgGqrQrv~lARal~~~p~illlDEpts~LD~~~ 514 (587)
T 3qf4_A 443 ---DATDDE----IVEAAKIAQIHDFIISLPEGYDSRVER-GGRNFSGGQKQRLSIARALVKKPKVLILDDCTSSVDPIT 514 (587)
T ss_dssp ---SCCHHH----HHHHHHHTTCHHHHHTSSSGGGCEECS-SSCSSCHHHHHHHHHHHHHHTCCSEEEEESCCTTSCHHH
T ss_pred ---CCCHHH----HHHHHHHhCcHHHHHhcccchhhHhcC-CCCCcCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHH
Confidence 112222 22233333 345567888876 667899999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhCCCEEEEEecCCchHHHhccCeEEEEeCCeEEEecChhhHHH
Q 007554 230 AFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAFE 284 (599)
Q Consensus 230 ~~~i~~~L~~l~~~g~tvi~~~H~p~~~i~~~~D~v~~L~~G~iv~~G~~~~~~~ 284 (599)
+..+.+.|+++. +|+|+|+++|+++ . ...||+|++|++|++++.|+++++.+
T Consensus 515 ~~~i~~~l~~~~-~~~tvi~itH~l~-~-~~~~d~i~vl~~G~i~~~g~~~el~~ 566 (587)
T 3qf4_A 515 EKRILDGLKRYT-KGCTTFIITQKIP-T-ALLADKILVLHEGKVAGFGTHKELLE 566 (587)
T ss_dssp HHHHHHHHHHHS-TTCEEEEEESCHH-H-HTTSSEEEEEETTEEEEEECHHHHHH
T ss_pred HHHHHHHHHHhC-CCCEEEEEecChH-H-HHhCCEEEEEECCEEEEECCHHHHHh
Confidence 999999999985 5899999999964 3 46899999999999999999998764
No 34
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=100.00 E-value=3.4e-45 Score=360.42 Aligned_cols=204 Identities=24% Similarity=0.336 Sum_probs=172.9
Q ss_pred cceeEEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCc
Q 007554 48 VSARLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLSF 127 (599)
Q Consensus 48 ~~~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~G~sGsGKSTLl~~L~G~~~~~~~~~G~I~~~g~~~~~~~ 127 (599)
.+..|+++|+++.+ ++ .+|+|+|+++++||+++|+||||||||||||+|+|+++|+ +|+|.++|++....+
T Consensus 7 ~~~~l~~~~ls~~y-----~~-~il~~vsl~i~~Ge~~~iiG~NGsGKSTLlk~l~Gl~~p~---~G~I~~~g~~~~~~~ 77 (214)
T 1sgw_A 7 HGSKLEIRDLSVGY-----DK-PVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPL---KGEIIYNGVPITKVK 77 (214)
T ss_dssp --CEEEEEEEEEES-----SS-EEEEEEEEEEETTCCEEEECCTTSSHHHHHHHHTTSSCCS---EEEEEETTEEGGGGG
T ss_pred CCceEEEEEEEEEe-----CC-eEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CeEEEECCEEhhhhc
Confidence 35579999999988 34 7999999999999999999999999999999999999885 999999998753234
Q ss_pred CeEEEEcCCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHHHHHHH
Q 007554 128 GTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIAL 207 (599)
Q Consensus 128 ~~~~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSGGerqRv~ia~ 207 (599)
+.++||+|++.+++.+||+||+.++...+.. . .+ +++++++++.+||++. ++. +.+||||||||++|||
T Consensus 78 ~~i~~v~q~~~~~~~~tv~enl~~~~~~~~~-~---~~-~~~~~~~l~~~gl~~~-~~~-----~~~LSgGqkqrv~lar 146 (214)
T 1sgw_A 78 GKIFFLPEEIIVPRKISVEDYLKAVASLYGV-K---VN-KNEIMDALESVEVLDL-KKK-----LGELSQGTIRRVQLAS 146 (214)
T ss_dssp GGEEEECSSCCCCTTSBHHHHHHHHHHHTTC-C---CC-HHHHHHHHHHTTCCCT-TSB-----GGGSCHHHHHHHHHHH
T ss_pred CcEEEEeCCCcCCCCCCHHHHHHHHHHhcCC-c---hH-HHHHHHHHHHcCCCcC-CCC-----hhhCCHHHHHHHHHHH
Confidence 6799999999999999999999997654211 1 11 3567889999999876 554 4579999999999999
Q ss_pred HHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhccCeEEEEeCCeE
Q 007554 208 EILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKT 273 (599)
Q Consensus 208 aL~~~p~illlDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~p~~~i~~~~D~v~~L~~G~i 273 (599)
+|+.+|++|||||||+|||+.++..+.+.|++++++|+|||++||++ .++..++|++++++ |+|
T Consensus 147 aL~~~p~lllLDEPts~LD~~~~~~l~~~l~~~~~~g~tiiivtHd~-~~~~~~~d~v~~~~-~~~ 210 (214)
T 1sgw_A 147 TLLVNAEIYVLDDPVVAIDEDSKHKVLKSILEILKEKGIVIISSREE-LSYCDVNENLHKYS-TKI 210 (214)
T ss_dssp HTTSCCSEEEEESTTTTSCTTTHHHHHHHHHHHHHHHSEEEEEESSC-CTTSSEEEEGGGGB-C--
T ss_pred HHHhCCCEEEEECCCcCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCH-HHHHHhCCEEEEeC-Ccc
Confidence 99999999999999999999999999999999986689999999997 46778888877553 444
No 35
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=100.00 E-value=3.9e-44 Score=363.75 Aligned_cols=208 Identities=21% Similarity=0.327 Sum_probs=178.9
Q ss_pred EEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCC--CCcCe
Q 007554 52 LTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTK--LSFGT 129 (599)
Q Consensus 52 l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~G~sGsGKSTLl~~L~G~~~~~~~~~G~I~~~g~~~~--~~~~~ 129 (599)
|+++|+++.+..+. ..+.+|+|+|++++ ||+++|+||||||||||||+|+|++ |+ +|+|.++|++.. ..++.
T Consensus 2 l~~~~l~~~y~~~~-~~~~il~~vsl~i~-Ge~~~i~G~NGsGKSTLlk~l~Gl~-p~---~G~I~~~g~~~~~~~~~~~ 75 (263)
T 2pjz_A 2 IQLKNVGITLSGKG-YERFSLENINLEVN-GEKVIILGPNGSGKTTLLRAISGLL-PY---SGNIFINGMEVRKIRNYIR 75 (263)
T ss_dssp EEEEEEEEEEEEET-TEEEEEEEEEEEEC-SSEEEEECCTTSSHHHHHHHHTTSS-CC---EEEEEETTEEGGGCSCCTT
T ss_pred EEEEEEEEEeCCCC-ccceeEEeeeEEEC-CEEEEEECCCCCCHHHHHHHHhCCC-CC---CcEEEECCEECcchHHhhh
Confidence 78999999984210 11679999999999 9999999999999999999999999 85 999999998742 11457
Q ss_pred EE-EEcCCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCC-ccccccccCcccCCCCHHHHHHHHHHH
Q 007554 130 AA-YVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQ-DCADTVIGNWHLRGISGGERRRVSIAL 207 (599)
Q Consensus 130 ~~-yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~l~L~-~~~~~~vg~~~~~~LSGGerqRv~ia~ 207 (599)
++ ||+|++.+ .+||+||+.+..... .. .+++++++++.+||. +..++.+ .+||||||||++|||
T Consensus 76 i~~~v~Q~~~l--~~tv~enl~~~~~~~---~~----~~~~~~~~l~~~gl~~~~~~~~~-----~~LSgGqkqRv~lAr 141 (263)
T 2pjz_A 76 YSTNLPEAYEI--GVTVNDIVYLYEELK---GL----DRDLFLEMLKALKLGEEILRRKL-----YKLSAGQSVLVRTSL 141 (263)
T ss_dssp EEECCGGGSCT--TSBHHHHHHHHHHHT---CC----CHHHHHHHHHHTTCCGGGGGSBG-----GGSCHHHHHHHHHHH
T ss_pred eEEEeCCCCcc--CCcHHHHHHHhhhhc---ch----HHHHHHHHHHHcCCChhHhcCCh-----hhCCHHHHHHHHHHH
Confidence 99 99999887 789999999976542 11 135578899999998 7777644 579999999999999
Q ss_pred HHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhccC-eEEEEeCCeEEEecChhhHH
Q 007554 208 EILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFD-RLYLLSGGKTVYFGETSAAF 283 (599)
Q Consensus 208 aL~~~p~illlDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~p~~~i~~~~D-~v~~L~~G~iv~~G~~~~~~ 283 (599)
||+.+|++|||||||+|||+.++..+.+.|+++++ |||++||++ +.+.++|| ++++|++|++++.|+++++.
T Consensus 142 aL~~~p~lllLDEPts~LD~~~~~~l~~~L~~~~~---tviivtHd~-~~~~~~~d~~i~~l~~G~i~~~g~~~~l~ 214 (263)
T 2pjz_A 142 ALASQPEIVGLDEPFENVDAARRHVISRYIKEYGK---EGILVTHEL-DMLNLYKEYKAYFLVGNRLQGPISVSELL 214 (263)
T ss_dssp HHHTCCSEEEEECTTTTCCHHHHHHHHHHHHHSCS---EEEEEESCG-GGGGGCTTSEEEEEETTEEEEEEEHHHHH
T ss_pred HHHhCCCEEEEECCccccCHHHHHHHHHHHHHhcC---cEEEEEcCH-HHHHHhcCceEEEEECCEEEEecCHHHHH
Confidence 99999999999999999999999999999998853 999999996 56778999 99999999999999988765
No 36
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=100.00 E-value=7.1e-44 Score=401.16 Aligned_cols=246 Identities=27% Similarity=0.378 Sum_probs=200.2
Q ss_pred hhhhhhhhHHHhhhcCCCCCccccCCCCCchhhHHhhhhccccCCCcceeEEEEeEEEEEEccCCcccceeeceEEEEeC
Q 007554 2 RDSAASNVIMEIEASKPAGNSIVVGGLSPLSETIWKEKINTEFSGDVSARLTWKDLTVMVTLSNGETHNVLEGLTGYAEP 81 (599)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~ 81 (599)
++.+|.+|+.++++.+|..+. + + .+.+ .....++++|++++|.. +++++|+|+|+++++
T Consensus 310 ~~~~a~~ri~~~l~~~~~~~~----~--~-------~~~~-----~~~~~i~~~~v~~~y~~---~~~~~l~~v~~~i~~ 368 (582)
T 3b60_A 310 RGMAACQTLFAILDSEQEKDE----G--K-------RVID-----RATGDLEFRNVTFTYPG---REVPALRNINLKIPA 368 (582)
T ss_dssp HHHHHHHHHHHHHHSCCSCCC----C--C-------BCCS-----CCCCCEEEEEEEECSSS---SSCCSEEEEEEEECT
T ss_pred HHHHHHHHHHHHHcCCCCccC----C--C-------CCCC-----CCCCcEEEEEEEEEcCC---CCCccccceeEEEcC
Confidence 578899999999987665321 0 0 0000 11224999999998831 126799999999999
Q ss_pred CeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCC-----cCeEEEEcCCCCCCCCCCHHHHHHHHhhcc
Q 007554 82 GTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLS-----FGTAAYVTQDDNLIGTLTVRETISYSARLR 156 (599)
Q Consensus 82 Ge~~aI~G~sGsGKSTLl~~L~G~~~~~~~~~G~I~~~g~~~~~~-----~~~~~yv~Q~~~l~~~lTV~e~l~~~~~~~ 156 (599)
||++||+||||||||||+|+|+|+++|+ +|+|.+||++.... ++.++||+|++.+|+. ||+||+.++..
T Consensus 369 G~~~~ivG~sGsGKSTLl~~l~g~~~p~---~G~i~~~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~-tv~eni~~~~~-- 442 (582)
T 3b60_A 369 GKTVALVGRSGSGKSTIASLITRFYDID---EGHILMDGHDLREYTLASLRNQVALVSQNVHLFND-TVANNIAYART-- 442 (582)
T ss_dssp TCEEEEEECTTSSHHHHHHHHTTTTCCS---EEEEEETTEETTTBCHHHHHHTEEEECSSCCCCSS-BHHHHHHTTTT--
T ss_pred CCEEEEECCCCCCHHHHHHHHhhccCCC---CCeEEECCEEccccCHHHHHhhCeEEccCCcCCCC-CHHHHHhccCC--
Confidence 9999999999999999999999999885 99999999986421 3469999999999986 99999998631
Q ss_pred CCCCCCHHHHHHHHHHHHHHcCCC-------ccccccccCcccCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHH
Q 007554 157 LPDKMPWSEKRTLVERTIIEMGLQ-------DCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAA 229 (599)
Q Consensus 157 ~~~~~~~~~~~~~v~~~l~~l~L~-------~~~~~~vg~~~~~~LSGGerqRv~ia~aL~~~p~illlDEPtsgLD~~~ 229 (599)
+ ..+. +++++.++.+++. +..||.+|+ .+.+||||||||++|||||+++|++|+||||||+||+.+
T Consensus 443 -~-~~~~----~~~~~~l~~~~l~~~~~~~p~g~~~~~~~-~~~~LSgGq~qrl~iAral~~~p~illlDEpts~LD~~~ 515 (582)
T 3b60_A 443 -E-EYSR----EQIEEAARMAYAMDFINKMDNGLDTIIGE-NGVLLSGGQRQRIAIARALLRDSPILILDEATSALDTES 515 (582)
T ss_dssp -S-CCCH----HHHHHHHHTTTCHHHHHHSTTGGGSBCCT-TSCSSCHHHHHHHHHHHHHHHCCSEEEEETTTSSCCHHH
T ss_pred -C-CCCH----HHHHHHHHHcCCHHHHHhccccccccccC-CCCCCCHHHHHHHHHHHHHHhCCCEEEEECccccCCHHH
Confidence 1 1122 3456667766664 356788876 567899999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhCCCEEEEEecCCchHHHhccCeEEEEeCCeEEEecChhhHHH
Q 007554 230 AFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAFE 284 (599)
Q Consensus 230 ~~~i~~~L~~l~~~g~tvi~~~H~p~~~i~~~~D~v~~L~~G~iv~~G~~~~~~~ 284 (599)
+..+.+.|+++.+ |+|+|+++|++. .+ +.||++++|++|++++.|+++++.+
T Consensus 516 ~~~i~~~l~~~~~-~~tvi~itH~~~-~~-~~~d~i~~l~~G~i~~~g~~~~l~~ 567 (582)
T 3b60_A 516 ERAIQAALDELQK-NRTSLVIAHRLS-TI-EQADEIVVVEDGIIVERGTHSELLA 567 (582)
T ss_dssp HHHHHHHHHHHHT-TSEEEEECSCGG-GT-TTCSEEEEEETTEEEEEECHHHHHH
T ss_pred HHHHHHHHHHHhC-CCEEEEEeccHH-HH-HhCCEEEEEECCEEEEecCHHHHHH
Confidence 9999999999965 899999999974 34 6799999999999999999987754
No 37
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=100.00 E-value=1.2e-43 Score=400.23 Aligned_cols=250 Identities=28% Similarity=0.397 Sum_probs=199.8
Q ss_pred hhhhhhhhHHHhhhcCCCCCccccCCCCCchhhHHhhhhccccCCCccee-EEEEeEEEEEEccCCcccceeeceEEEEe
Q 007554 2 RDSAASNVIMEIEASKPAGNSIVVGGLSPLSETIWKEKINTEFSGDVSAR-LTWKDLTVMVTLSNGETHNVLEGLTGYAE 80 (599)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-l~~~~ls~~~~~~~~~~~~iL~~vs~~i~ 80 (599)
++.+|.+|+.++++.+|..+.. ++ ..+ ....... ++++|++++|.. ..++++|+|+|++++
T Consensus 307 ~~~~s~~ri~~~l~~~~~~~~~--~~-----------~~~---~~~~~~~~i~~~~v~~~y~~--~~~~~vl~~isl~i~ 368 (595)
T 2yl4_A 307 KGLGAGGRLWELLEREPKLPFN--EG-----------VIL---NEKSFQGALEFKNVHFAYPA--RPEVPIFQDFSLSIP 368 (595)
T ss_dssp HHHHHHHHHHHHHTCCCSSCSS--CS-----------BCC---CTTTCCCCEEEEEEEEECSS--CTTSEEEEEEEEEEC
T ss_pred HHHHHHHHHHHHHcCCCccCCC--CC-----------CCC---CcCCCCCeEEEEEEEEEeCC--CCCCccccceEEEEc
Confidence 5778999999999876653310 00 000 0011234 999999999832 113569999999999
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCC-----cCeEEEEcCCCCCCCCCCHHHHHHHHhhc
Q 007554 81 PGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLS-----FGTAAYVTQDDNLIGTLTVRETISYSARL 155 (599)
Q Consensus 81 ~Ge~~aI~G~sGsGKSTLl~~L~G~~~~~~~~~G~I~~~g~~~~~~-----~~~~~yv~Q~~~l~~~lTV~e~l~~~~~~ 155 (599)
+||++||+||||||||||+|+|+|+++|+ +|+|.+||++.... ++.++||+|++.+|+. ||+||+.++...
T Consensus 369 ~G~~~~ivG~sGsGKSTLl~~l~g~~~p~---~G~i~~~g~~i~~~~~~~~~~~i~~v~Q~~~l~~~-tv~eni~~~~~~ 444 (595)
T 2yl4_A 369 SGSVTALVGPSGSGKSTVLSLLLRLYDPA---SGTISLDGHDIRQLNPVWLRSKIGTVSQEPILFSC-SIAENIAYGADD 444 (595)
T ss_dssp TTCEEEEECCTTSSSTHHHHHHTTSSCCS---EEEEEETTEETTTBCHHHHHHSEEEECSSCCCCSS-BHHHHHHTTSSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCcCCC---CcEEEECCEEhhhCCHHHHHhceEEEccCCcccCC-CHHHHHhhcCCC
Confidence 99999999999999999999999999885 99999999986421 3469999999999975 999999986421
Q ss_pred cCCCCCCHHHHHHHHHHHHHHcCCC-------ccccccccCcccCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHH
Q 007554 156 RLPDKMPWSEKRTLVERTIIEMGLQ-------DCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSA 228 (599)
Q Consensus 156 ~~~~~~~~~~~~~~v~~~l~~l~L~-------~~~~~~vg~~~~~~LSGGerqRv~ia~aL~~~p~illlDEPtsgLD~~ 228 (599)
. ...+ +++++++++.+++. +..|+.+|+ .+.+||||||||++|||||+++|++|+||||||+||+.
T Consensus 445 ~--~~~~----~~~~~~~~~~~~l~~~~~~l~~g~~~~~~~-~~~~LSgGq~qrv~iAral~~~p~illlDEpts~LD~~ 517 (595)
T 2yl4_A 445 P--SSVT----AEEIQRVAEVANAVAFIRNFPQGFNTVVGE-KGVLLSGGQKQRIAIARALLKNPKILLLDEATSALDAE 517 (595)
T ss_dssp T--TTSC----HHHHHHHHHHTTCHHHHHTSSSGGGCBCSS-SSCCCCHHHHHHHHHHHHHHHCCSEEEEECCCSSCCHH
T ss_pred c--cccC----HHHHHHHHHHcCCHHHHHhCcccccccccC-CCCcCCHHHHHHHHHHHHHHcCCCEEEEECcccCCCHH
Confidence 1 0112 24466777777653 457888876 56789999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhCCCEEEEEecCCchHHHhccCeEEEEeCCeEEEecChhhHH
Q 007554 229 AAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAF 283 (599)
Q Consensus 229 ~~~~i~~~L~~l~~~g~tvi~~~H~p~~~i~~~~D~v~~L~~G~iv~~G~~~~~~ 283 (599)
++..+.+.|+++.+ |+|+|+++|++. .+ +.||++++|++|++++.|+++++.
T Consensus 518 ~~~~i~~~l~~~~~-~~tvi~itH~~~-~~-~~~d~i~~l~~G~i~~~g~~~~l~ 569 (595)
T 2yl4_A 518 NEYLVQEALDRLMD-GRTVLVIAHRLS-TI-KNANMVAVLDQGKITEYGKHEELL 569 (595)
T ss_dssp HHHHHHHHHHHHHT-TSEEEEECCCHH-HH-HHSSEEEEEETTEEEEEECSCC--
T ss_pred HHHHHHHHHHHHhc-CCEEEEEecCHH-HH-HcCCEEEEEECCEEEEECCHHHHH
Confidence 99999999999976 799999999964 44 569999999999999999988764
No 38
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=100.00 E-value=7.8e-44 Score=400.85 Aligned_cols=245 Identities=28% Similarity=0.392 Sum_probs=199.3
Q ss_pred hhhhhhhhHHHhhhcCCCCCccccCCCCCchhhHHhhhhccccCCCcceeEEEEeEEEEEEccCCcccceeeceEEEEeC
Q 007554 2 RDSAASNVIMEIEASKPAGNSIVVGGLSPLSETIWKEKINTEFSGDVSARLTWKDLTVMVTLSNGETHNVLEGLTGYAEP 81 (599)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~ 81 (599)
++.+|.+|+.++++.+|..+. +.. ..+ .....++++|++++|.. +++++|+|+|+++++
T Consensus 310 ~~~~a~~ri~~~l~~~~~~~~----~~~---------~~~-----~~~~~i~~~~v~~~y~~---~~~~~l~~i~l~i~~ 368 (582)
T 3b5x_A 310 RGMAACQTLFGLMDLETERDN----GKY---------EAE-----RVNGEVDVKDVTFTYQG---KEKPALSHVSFSIPQ 368 (582)
T ss_pred HHHHHHHHHHHHHcCCCcCCC----CCC---------CCC-----CCCCeEEEEEEEEEcCC---CCccccccceEEECC
Confidence 578899999999987665321 000 000 11235999999999842 126799999999999
Q ss_pred CeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC-----CcCeEEEEcCCCCCCCCCCHHHHHHHHhhcc
Q 007554 82 GTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL-----SFGTAAYVTQDDNLIGTLTVRETISYSARLR 156 (599)
Q Consensus 82 Ge~~aI~G~sGsGKSTLl~~L~G~~~~~~~~~G~I~~~g~~~~~-----~~~~~~yv~Q~~~l~~~lTV~e~l~~~~~~~ 156 (599)
||+++|+||||||||||+|+|+|+++|+ +|+|.+||++... .++.++||+|++.+|+. ||+||+.++..
T Consensus 369 G~~~~ivG~sGsGKSTll~~l~g~~~p~---~G~i~~~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~-tv~eni~~~~~-- 442 (582)
T 3b5x_A 369 GKTVALVGRSGSGKSTIANLFTRFYDVD---SGSICLDGHDVRDYKLTNLRRHFALVSQNVHLFND-TIANNIAYAAE-- 442 (582)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCCCCC---CCEEEECCEEhhhCCHHHHhcCeEEEcCCCccccc-cHHHHHhccCC--
Confidence 9999999999999999999999999986 9999999987532 13579999999999986 99999998631
Q ss_pred CCCCCCHHHHHHHHHHHHHHcCCC-------ccccccccCcccCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHH
Q 007554 157 LPDKMPWSEKRTLVERTIIEMGLQ-------DCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAA 229 (599)
Q Consensus 157 ~~~~~~~~~~~~~v~~~l~~l~L~-------~~~~~~vg~~~~~~LSGGerqRv~ia~aL~~~p~illlDEPtsgLD~~~ 229 (599)
+ ..+ ++++++.++.+++. +..||.+|+ .+.+||||||||++|||||+++|++|+||||||+||+.+
T Consensus 443 -~-~~~----~~~~~~~~~~~~l~~~~~~~p~g~~t~~~~-~~~~LSgGq~qr~~iAral~~~p~illlDEpts~LD~~~ 515 (582)
T 3b5x_A 443 -G-EYT----REQIEQAARQAHAMEFIENMPQGLDTVIGE-NGTSLSGGQRQRVAIARALLRDAPVLILDEATSALDTES 515 (582)
T ss_pred -C-CCC----HHHHHHHHHHCCCHHHHHhCcccccchhcC-CCCcCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHH
Confidence 1 112 23456667777664 356777876 567899999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhCCCEEEEEecCCchHHHhccCeEEEEeCCeEEEecChhhHH
Q 007554 230 AFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAF 283 (599)
Q Consensus 230 ~~~i~~~L~~l~~~g~tvi~~~H~p~~~i~~~~D~v~~L~~G~iv~~G~~~~~~ 283 (599)
+..+.+.|+++.+ |+|+|+++|++. .+ +.||++++|++|++++.|+++++.
T Consensus 516 ~~~i~~~l~~~~~-~~tvi~itH~~~-~~-~~~d~i~~l~~G~i~~~g~~~~l~ 566 (582)
T 3b5x_A 516 ERAIQAALDELQK-NKTVLVIAHRLS-TI-EQADEILVVDEGEIIERGRHADLL 566 (582)
T ss_pred HHHHHHHHHHHcC-CCEEEEEecCHH-HH-HhCCEEEEEECCEEEEECCHHHHH
Confidence 9999999999864 899999999974 44 579999999999999999988765
No 39
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=100.00 E-value=2.2e-44 Score=406.27 Aligned_cols=245 Identities=25% Similarity=0.366 Sum_probs=197.2
Q ss_pred hhhhhhhhHHHhhhcCCCCCccccCCCCCchhhHHhhhhccccCCCcceeEEEEeEEEEEEccCCcccceeeceEEEEeC
Q 007554 2 RDSAASNVIMEIEASKPAGNSIVVGGLSPLSETIWKEKINTEFSGDVSARLTWKDLTVMVTLSNGETHNVLEGLTGYAEP 81 (599)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~ 81 (599)
++.+|++|+.++++.+|..+... ..+ .......++++|+++.|. +++++|+|+|+++++
T Consensus 322 ~~~~s~~ri~~~l~~~~~~~~~~--------------~~~---~~~~~~~i~~~~v~~~y~----~~~~~l~~isl~i~~ 380 (598)
T 3qf4_B 322 MALASAERIFEILDLEEEKDDPD--------------AVE---LREVRGEIEFKNVWFSYD----KKKPVLKDITFHIKP 380 (598)
T ss_dssp HHHHHHHHHHHHTTSCCCCCCSS--------------CCC---CCSCCCCEEEEEEECCSS----SSSCSCCSEEEECCT
T ss_pred HHHHHHHHHHHHHcCCCCCCCCC--------------CCC---CCCCCCeEEEEEEEEECC----CCCccccceEEEEcC
Confidence 57889999999998776643200 000 011223599999999883 346799999999999
Q ss_pred CeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCC-----cCeEEEEcCCCCCCCCCCHHHHHHHHhhcc
Q 007554 82 GTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLS-----FGTAAYVTQDDNLIGTLTVRETISYSARLR 156 (599)
Q Consensus 82 Ge~~aI~G~sGsGKSTLl~~L~G~~~~~~~~~G~I~~~g~~~~~~-----~~~~~yv~Q~~~l~~~lTV~e~l~~~~~~~ 156 (599)
||++||+||||||||||+|+|+|+++|+ +|+|.+||++.... ++.++||+|++.+|+. ||+||+.++...
T Consensus 381 G~~~~ivG~sGsGKSTll~~l~g~~~p~---~G~i~~~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~-tv~eni~~~~~~- 455 (598)
T 3qf4_B 381 GQKVALVGPTGSGKTTIVNLLMRFYDVD---RGQILVDGIDIRKIKRSSLRSSIGIVLQDTILFST-TVKENLKYGNPG- 455 (598)
T ss_dssp TCEEEEECCTTSSTTHHHHHHTTSSCCS---EEEEEETTEEGGGSCHHHHHHHEEEECTTCCCCSS-BHHHHHHSSSTT-
T ss_pred CCEEEEECCCCCcHHHHHHHHhcCcCCC---CeEEEECCEEhhhCCHHHHHhceEEEeCCCccccc-cHHHHHhcCCCC-
Confidence 9999999999999999999999999986 99999999985421 3579999999999975 999999886321
Q ss_pred CCCCCCHHHHHHHHHHHHHHcC-------CCccccccccCcccCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHH
Q 007554 157 LPDKMPWSEKRTLVERTIIEMG-------LQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAA 229 (599)
Q Consensus 157 ~~~~~~~~~~~~~v~~~l~~l~-------L~~~~~~~vg~~~~~~LSGGerqRv~ia~aL~~~p~illlDEPtsgLD~~~ 229 (599)
.+.++ +.+.++..+ +.+..||.+|+ .+.+||||||||++|||||+++|++|+||||||+||+.+
T Consensus 456 ----~~~~~----~~~~~~~~~~~~~~~~~~~g~~t~~~~-~g~~LSgGq~Qrv~iAral~~~p~illlDEpts~LD~~~ 526 (598)
T 3qf4_B 456 ----ATDEE----IKEAAKLTHSDHFIKHLPEGYETVLTD-NGEDLSQGQRQLLAITRAFLANPKILILDEATSNVDTKT 526 (598)
T ss_dssp ----CCTTH----HHHHTTTTTCHHHHHTSTTGGGCBCHH-HHTTSCHHHHHHHHHHHHHHTCCSEEEECCCCTTCCHHH
T ss_pred ----CCHHH----HHHHHHHhCCHHHHHhccccccchhcC-CCCCCCHHHHHHHHHHHHHhcCCCEEEEECCccCCCHHH
Confidence 11222 233333333 34567788875 567899999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhCCCEEEEEecCCchHHHhccCeEEEEeCCeEEEecChhhHHH
Q 007554 230 AFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAFE 284 (599)
Q Consensus 230 ~~~i~~~L~~l~~~g~tvi~~~H~p~~~i~~~~D~v~~L~~G~iv~~G~~~~~~~ 284 (599)
+..+.+.|+++. +|+|+|+++|+++ .+ +.||+|++|++|++++.|+++++.+
T Consensus 527 ~~~i~~~l~~~~-~~~t~i~itH~l~-~~-~~~d~i~~l~~G~i~~~g~~~~l~~ 578 (598)
T 3qf4_B 527 EKSIQAAMWKLM-EGKTSIIIAHRLN-TI-KNADLIIVLRDGEIVEMGKHDELIQ 578 (598)
T ss_dssp HHHHHHHHHHHH-TTSEEEEESCCTT-HH-HHCSEEEEECSSSEEECSCHHHHHH
T ss_pred HHHHHHHHHHHc-CCCEEEEEecCHH-HH-HcCCEEEEEECCEEEEECCHHHHHh
Confidence 999999999986 5899999999975 44 5599999999999999999988764
No 40
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=100.00 E-value=1.6e-43 Score=352.67 Aligned_cols=204 Identities=23% Similarity=0.327 Sum_probs=167.7
Q ss_pred eEEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCcCeE
Q 007554 51 RLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLSFGTA 130 (599)
Q Consensus 51 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~G~sGsGKSTLl~~L~G~~~~~~~~~G~I~~~g~~~~~~~~~~ 130 (599)
.|+++|+++.+.. +++.+|+|+|+++++||+++|+||||||||||+|+|+|+++|. +|+|.++| .+
T Consensus 6 ~l~~~~l~~~y~~---~~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g--------~i 71 (229)
T 2pze_A 6 EVVMENVTAFWEE---GGTPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPS---EGKIKHSG--------RI 71 (229)
T ss_dssp EEEEEEEEECSST---TSCCSEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCS---EEEEEECS--------CE
T ss_pred eEEEEEEEEEeCC---CCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCcCC---ccEEEECC--------EE
Confidence 5899999998731 2467999999999999999999999999999999999999885 99999998 38
Q ss_pred EEEcCCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCcc-------ccccccCcccCCCCHHHHHHH
Q 007554 131 AYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDC-------ADTVIGNWHLRGISGGERRRV 203 (599)
Q Consensus 131 ~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~l~L~~~-------~~~~vg~~~~~~LSGGerqRv 203 (599)
+|++|++.+++. ||+||+.++... .. ....+.++.+++.+. .++.+++ .+..||||||||+
T Consensus 72 ~~v~q~~~~~~~-tv~enl~~~~~~------~~----~~~~~~~~~~~l~~~~~~~~~~~~~~~~~-~~~~LSgGqkqrv 139 (229)
T 2pze_A 72 SFCSQFSWIMPG-TIKENIIFGVSY------DE----YRYRSVIKACQLEEDISKFAEKDNIVLGE-GGITLSGGQRARI 139 (229)
T ss_dssp EEECSSCCCCSB-CHHHHHHTTSCC------CH----HHHHHHHHHTTCHHHHTTSTTGGGSCBCT-TCTTSCHHHHHHH
T ss_pred EEEecCCcccCC-CHHHHhhccCCc------Ch----HHHHHHHHHhCcHHHHHhCcccccccccC-CCCcCCHHHHHHH
Confidence 999999999886 999999875311 11 112334444454332 2333433 4578999999999
Q ss_pred HHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHH-HHHHHhCCCEEEEEecCCchHHHhccCeEEEEeCCeEEEecChhhH
Q 007554 204 SIALEILMRPRLLFLDEPTSGLDSAAAFFVTQT-LRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAA 282 (599)
Q Consensus 204 ~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~-L~~l~~~g~tvi~~~H~p~~~i~~~~D~v~~L~~G~iv~~G~~~~~ 282 (599)
+|||||+.+|++|||||||+|||+.++..+.+. ++++. +|+|||++||++ +.+ ..||++++|++|++++.|+++++
T Consensus 140 ~lAral~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~-~~~tvi~vtH~~-~~~-~~~d~v~~l~~G~i~~~g~~~~~ 216 (229)
T 2pze_A 140 SLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLM-ANKTRILVTSKM-EHL-KKADKILILHEGSSYFYGTFSEL 216 (229)
T ss_dssp HHHHHHHSCCSEEEEESTTTTSCHHHHHHHHHHCCCCCT-TTSEEEEECCCH-HHH-HHCSEEEEEETTEEEEEECHHHH
T ss_pred HHHHHHhcCCCEEEEECcccCCCHHHHHHHHHHHHHHhh-CCCEEEEEcCCh-HHH-HhCCEEEEEECCEEEEECCHHHH
Confidence 999999999999999999999999999999997 45654 489999999996 445 46999999999999999998876
Q ss_pred H
Q 007554 283 F 283 (599)
Q Consensus 283 ~ 283 (599)
.
T Consensus 217 ~ 217 (229)
T 2pze_A 217 Q 217 (229)
T ss_dssp H
T ss_pred H
Confidence 4
No 41
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=100.00 E-value=2e-43 Score=353.69 Aligned_cols=206 Identities=25% Similarity=0.368 Sum_probs=165.4
Q ss_pred EEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCcCeEE
Q 007554 52 LTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLSFGTAA 131 (599)
Q Consensus 52 l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~G~sGsGKSTLl~~L~G~~~~~~~~~G~I~~~g~~~~~~~~~~~ 131 (599)
|+++|+++.+.. .++.+|+|+|+++++||+++|+||||||||||+|+|+|+++|. +|+|.++| .++
T Consensus 4 l~~~~l~~~y~~---~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~---~G~I~~~g--------~i~ 69 (237)
T 2cbz_A 4 ITVRNATFTWAR---SDPPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKV---EGHVAIKG--------SVA 69 (237)
T ss_dssp EEEEEEEEESCT---TSCCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTCSEEE---EEEEEECS--------CEE
T ss_pred EEEEEEEEEeCC---CCCceeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CceEEECC--------EEE
Confidence 889999998831 1467999999999999999999999999999999999999885 99999998 389
Q ss_pred EEcCCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHH---HHHHcCCCc-cccccccCcccCCCCHHHHHHHHHHH
Q 007554 132 YVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVER---TIIEMGLQD-CADTVIGNWHLRGISGGERRRVSIAL 207 (599)
Q Consensus 132 yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~---~l~~l~L~~-~~~~~vg~~~~~~LSGGerqRv~ia~ 207 (599)
||+|++.+ +.+||+||+.++... . ... .+.+.+ +.+.+++.+ ..++.++ ..+.+|||||||||+|||
T Consensus 70 ~v~Q~~~~-~~~tv~enl~~~~~~--~----~~~-~~~~~~~~~l~~~~~~~~~~~~~~~~-~~~~~LSgGqkqRv~lAr 140 (237)
T 2cbz_A 70 YVPQQAWI-QNDSLRENILFGCQL--E----EPY-YRSVIQACALLPDLEILPSGDRTEIG-EKGVNLSGGQKQRVSLAR 140 (237)
T ss_dssp EECSSCCC-CSEEHHHHHHTTSCC--C----TTH-HHHHHHHTTCHHHHTTSTTGGGSEES-TTSBCCCHHHHHHHHHHH
T ss_pred EEcCCCcC-CCcCHHHHhhCcccc--C----HHH-HHHHHHHHhhHHHHHhcccccccccc-CCCCCCCHHHHHHHHHHH
Confidence 99999865 578999999886321 1 111 111111 222333321 2233343 356789999999999999
Q ss_pred HHhhCCCEEEEeCCCCCCCHHHHHHHHHHHH---HHHhCCCEEEEEecCCchHHHhccCeEEEEeCCeEEEecChhhHH
Q 007554 208 EILMRPRLLFLDEPTSGLDSAAAFFVTQTLR---CLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAF 283 (599)
Q Consensus 208 aL~~~p~illlDEPtsgLD~~~~~~i~~~L~---~l~~~g~tvi~~~H~p~~~i~~~~D~v~~L~~G~iv~~G~~~~~~ 283 (599)
||+.+|++|||||||+|||+.++..+++.|+ ++. +|+|||++||++. .+ ..||++++|++|++++.|+++++.
T Consensus 141 aL~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~~~-~~~tviivtH~~~-~~-~~~d~v~~l~~G~i~~~g~~~~~~ 216 (237)
T 2cbz_A 141 AVYSNADIYLFDDPLSAVDAHVGKHIFENVIGPKGML-KNKTRILVTHSMS-YL-PQVDVIIVMSGGKISEMGSYQELL 216 (237)
T ss_dssp HHHHCCSEEEEESTTTTSCHHHHHHHHHHTTSTTSTT-TTSEEEEECSCST-TG-GGSSEEEEEETTEEEEEECHHHHH
T ss_pred HHhcCCCEEEEeCcccccCHHHHHHHHHHHHHHHhhc-CCCEEEEEecChH-HH-HhCCEEEEEeCCEEEEeCCHHHHh
Confidence 9999999999999999999999999999995 443 5899999999975 34 579999999999999999988764
No 42
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=100.00 E-value=1.8e-43 Score=376.82 Aligned_cols=214 Identities=24% Similarity=0.301 Sum_probs=180.3
Q ss_pred eeEEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCC---
Q 007554 50 ARLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLS--- 126 (599)
Q Consensus 50 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~G~sGsGKSTLl~~L~G~~~~~~~~~G~I~~~g~~~~~~--- 126 (599)
..|+++||+++|.. +++.+|+|||+++++||+++|+||||||||||||+|+|+++ + +|+|.++|++....
T Consensus 18 ~~i~~~~l~~~y~~---~~~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~-~---~G~I~i~G~~i~~~~~~ 90 (390)
T 3gd7_A 18 GQMTVKDLTAKYTE---GGNAILENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN-T---EGEIQIDGVSWDSITLE 90 (390)
T ss_dssp CCEEEEEEEEESSS---SSCCSEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTCSE-E---EEEEEESSCBTTSSCHH
T ss_pred CeEEEEEEEEEecC---CCeEEeeceeEEEcCCCEEEEECCCCChHHHHHHHHhCCCC-C---CeEEEECCEECCcCChH
Confidence 45999999998842 34679999999999999999999999999999999999986 4 89999999875321
Q ss_pred --cCeEEEEcCCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccC------cccCCCCHH
Q 007554 127 --FGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGN------WHLRGISGG 198 (599)
Q Consensus 127 --~~~~~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~------~~~~~LSGG 198 (599)
++.++||+|++.+|+ +||+||+.+.. ... ++++.++++.++|.+..++.... .....||||
T Consensus 91 ~~rr~ig~v~Q~~~lf~-~tv~enl~~~~------~~~----~~~v~~~l~~~~L~~~~~~~p~~l~~~i~~~g~~LSGG 159 (390)
T 3gd7_A 91 QWRKAFGVIPQKVFIFS-GTFRKNLDPNA------AHS----DQEIWKVADEVGLRSVIEQFPGKLDFVLVDGGCVLSHG 159 (390)
T ss_dssp HHHHTEEEESCCCCCCS-EEHHHHHCTTC------CSC----HHHHHHHHHHTTCHHHHTTSTTGGGCEECTTTTTSCHH
T ss_pred HHhCCEEEEcCCcccCc-cCHHHHhhhcc------ccC----HHHHHHHHHHhCCHHHHhhcccccccccccccccCCHH
Confidence 357999999999998 59999996421 111 24577889999998776664431 123349999
Q ss_pred HHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhccCeEEEEeCCeEEEecC
Q 007554 199 ERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGE 278 (599)
Q Consensus 199 erqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~p~~~i~~~~D~v~~L~~G~iv~~G~ 278 (599)
|||||+|||||+.+|++|||||||||||+.++.++.+.|+++. +++|+|+++||+ + ....||+|++|++|+++..|+
T Consensus 160 qrQRvalARAL~~~P~lLLLDEPts~LD~~~~~~l~~~l~~~~-~~~tvi~vtHd~-e-~~~~aDri~vl~~G~i~~~g~ 236 (390)
T 3gd7_A 160 HKQLMCLARSVLSKAKILLLDEPSAHLDPVTYQIIRRTLKQAF-ADCTVILCEARI-E-AMLECDQFLVIEENKVRQYDS 236 (390)
T ss_dssp HHHHHHHHHHHHTTCCEEEEESHHHHSCHHHHHHHHHHHHTTT-TTSCEEEECSSS-G-GGTTCSEEEEEETTEEEEESS
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHh-CCCEEEEEEcCH-H-HHHhCCEEEEEECCEEEEECC
Confidence 9999999999999999999999999999999999999999864 579999999996 3 456799999999999999999
Q ss_pred hhhHHH
Q 007554 279 TSAAFE 284 (599)
Q Consensus 279 ~~~~~~ 284 (599)
++++..
T Consensus 237 ~~el~~ 242 (390)
T 3gd7_A 237 ILELYH 242 (390)
T ss_dssp HHHHHH
T ss_pred HHHHHh
Confidence 998754
No 43
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=100.00 E-value=2.6e-43 Score=428.05 Aligned_cols=250 Identities=26% Similarity=0.404 Sum_probs=205.4
Q ss_pred hhhhhhhhHHHhhhcCCCCCccccCCCCCchhhHHhhhhccccCCCcceeEEEEeEEEEEEccCCcccceeeceEEEEeC
Q 007554 2 RDSAASNVIMEIEASKPAGNSIVVGGLSPLSETIWKEKINTEFSGDVSARLTWKDLTVMVTLSNGETHNVLEGLTGYAEP 81 (599)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~ 81 (599)
++.+|++|+.++++.+|..+....+ . ...+....|+|+||+++|+. ..+.++|+|+|++|+|
T Consensus 1043 ~~~~a~~ri~~~l~~~~~~~~~~~~------------~----~~~~~~g~I~f~nVsf~Y~~--~~~~~VL~~isl~I~~ 1104 (1321)
T 4f4c_A 1043 KATFAGGIIFGMLRKISKIDSLSLA------------G----EKKKLYGKVIFKNVRFAYPE--RPEIEILKGLSFSVEP 1104 (1321)
T ss_dssp HHHHHHHHHHHHHHCCCSSCTTCCC------------S----BCCCCCCCEEEEEEEECCTT--SCSSCSEEEEEEEECT
T ss_pred HHHHHHHHHHHHhhCcccCCCccCC------------C----CCCCCCCeEEEEEEEEeCCC--CCCCccccceeEEECC
Confidence 4678999999999988775531110 0 00112235999999999853 2345799999999999
Q ss_pred CeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC-----CcCeEEEEcCCCCCCCCCCHHHHHHHHhhcc
Q 007554 82 GTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL-----SFGTAAYVTQDDNLIGTLTVRETISYSARLR 156 (599)
Q Consensus 82 Ge~~aI~G~sGsGKSTLl~~L~G~~~~~~~~~G~I~~~g~~~~~-----~~~~~~yv~Q~~~l~~~lTV~e~l~~~~~~~ 156 (599)
||.+||+||||||||||+++|.|+++|. +|+|++||.+++. .+++++|||||+.+|+. |+||||.++..
T Consensus 1105 Ge~vaIVG~SGsGKSTL~~lL~rl~~p~---~G~I~iDG~di~~i~~~~lR~~i~~V~Qdp~LF~g-TIreNI~~gld-- 1178 (1321)
T 4f4c_A 1105 GQTLALVGPSGCGKSTVVALLERFYDTL---GGEIFIDGSEIKTLNPEHTRSQIAIVSQEPTLFDC-SIAENIIYGLD-- 1178 (1321)
T ss_dssp TCEEEEECSTTSSTTSHHHHHTTSSCCS---SSEEEETTEETTTBCHHHHHTTEEEECSSCCCCSE-EHHHHHSSSSC--
T ss_pred CCEEEEECCCCChHHHHHHHHhcCccCC---CCEEEECCEEhhhCCHHHHHhheEEECCCCEeeCc-cHHHHHhccCC--
Confidence 9999999999999999999999999986 9999999998643 24689999999999987 99999988632
Q ss_pred CCCCCCHHHHHHHHHHHHHHcC-------CCccccccccCcccCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHH
Q 007554 157 LPDKMPWSEKRTLVERTIIEMG-------LQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAA 229 (599)
Q Consensus 157 ~~~~~~~~~~~~~v~~~l~~l~-------L~~~~~~~vg~~~~~~LSGGerqRv~ia~aL~~~p~illlDEPtsgLD~~~ 229 (599)
|...+.+ .+.+.++..+ |++..||.||+ .+..||||||||++|||||+++|+||+||||||+||+++
T Consensus 1179 -~~~~sd~----ei~~Al~~a~l~~~I~~Lp~GldT~vge-~G~~LSgGQrQriaiARAllr~~~ILiLDEaTSaLD~~t 1252 (1321)
T 4f4c_A 1179 -PSSVTMA----QVEEAARLANIHNFIAELPEGFETRVGD-RGTQLSGGQKQRIAIARALVRNPKILLLDEATSALDTES 1252 (1321)
T ss_dssp -TTTSCHH----HHHHHHHHTTCHHHHHTSTTTTCSEETT-TSCSSCHHHHHHHHHHHHHHSCCSEEEEESCCCSTTSHH
T ss_pred -CCCCCHH----HHHHHHHHhCChHHHHcCcCCCCCEecC-CCcccCHHHHHHHHHHHHHHhCCCEEEEeCccccCCHHH
Confidence 2223333 3444555544 46788999997 566799999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhCCCEEEEEecCCchHHHhccCeEEEEeCCeEEEecChhhHHH
Q 007554 230 AFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAFE 284 (599)
Q Consensus 230 ~~~i~~~L~~l~~~g~tvi~~~H~p~~~i~~~~D~v~~L~~G~iv~~G~~~~~~~ 284 (599)
...|.+.|+++. +|+|+|+++|+++. ...||+|++|++|+++++|+++++++
T Consensus 1253 E~~Iq~~l~~~~-~~~TvI~IAHRLsT--i~~aD~I~Vld~G~IvE~Gth~eLl~ 1304 (1321)
T 4f4c_A 1253 EKVVQEALDRAR-EGRTCIVIAHRLNT--VMNADCIAVVSNGTIIEKGTHTQLMS 1304 (1321)
T ss_dssp HHHHHHHHTTTS-SSSEEEEECSSSST--TTTCSEEEEESSSSEEEEECHHHHHH
T ss_pred HHHHHHHHHHHc-CCCEEEEeccCHHH--HHhCCEEEEEECCEEEEECCHHHHHh
Confidence 999999998875 48999999999863 67899999999999999999998875
No 44
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=100.00 E-value=4.1e-43 Score=426.28 Aligned_cols=249 Identities=26% Similarity=0.355 Sum_probs=205.8
Q ss_pred hhhhhhhhHHHhhhcCCCCCccccCCCCCchhhHHhhhhccccCCCcceeEEEEeEEEEEEccCCcccceeeceEEEEeC
Q 007554 2 RDSAASNVIMEIEASKPAGNSIVVGGLSPLSETIWKEKINTEFSGDVSARLTWKDLTVMVTLSNGETHNVLEGLTGYAEP 81 (599)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~ 81 (599)
+|.+|++|+.++++.+|..+.....+. ........|+++|++++|+.+ .++++|+|+|+++++
T Consensus 381 ~~~~s~~ri~~~l~~~~~~~~~~~~~~---------------~~~~~~g~I~~~nvsF~Y~~~--~~~~vL~~isl~i~~ 443 (1321)
T 4f4c_A 381 TAQGAASGIYEVLDRKPVIDSSSKAGR---------------KDMKIKGDITVENVHFTYPSR--PDVPILRGMNLRVNA 443 (1321)
T ss_dssp HHHHHHHHHHHHTTTSCCSSCSSSCCC---------------CCCCCCCCEEEEEEEECCSSS--TTSCSEEEEEEEECT
T ss_pred HHHHHHHHHHHHHcCCccccccccccc---------------cCCCCCCcEEEEEeeeeCCCC--CCCceeeceEEeecC
Confidence 578999999999998887654111100 001122359999999998532 357899999999999
Q ss_pred CeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCC-----cCeEEEEcCCCCCCCCCCHHHHHHHHhhcc
Q 007554 82 GTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLS-----FGTAAYVTQDDNLIGTLTVRETISYSARLR 156 (599)
Q Consensus 82 Ge~~aI~G~sGsGKSTLl~~L~G~~~~~~~~~G~I~~~g~~~~~~-----~~~~~yv~Q~~~l~~~lTV~e~l~~~~~~~ 156 (599)
||.+||+||||||||||+++|.|.++|. +|+|.+||.+++.. ++.++||+|++.+|.. ||+|||.|+..
T Consensus 444 G~~vaivG~sGsGKSTll~ll~~~~~~~---~G~I~idG~~i~~~~~~~lr~~i~~v~Q~~~Lf~~-TI~eNI~~g~~-- 517 (1321)
T 4f4c_A 444 GQTVALVGSSGCGKSTIISLLLRYYDVL---KGKITIDGVDVRDINLEFLRKNVAVVSQEPALFNC-TIEENISLGKE-- 517 (1321)
T ss_dssp TCEEEEEECSSSCHHHHHHHHTTSSCCS---EEEEEETTEETTTSCHHHHHHHEEEECSSCCCCSE-EHHHHHHTTCT--
T ss_pred CcEEEEEecCCCcHHHHHHHhccccccc---cCcccCCCccchhccHHHHhhcccccCCcceeeCC-chhHHHhhhcc--
Confidence 9999999999999999999999999986 99999999986532 3579999999999987 99999998732
Q ss_pred CCCCCCHHHHHHHHHHHHHHcC-------CCccccccccCcccCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHH
Q 007554 157 LPDKMPWSEKRTLVERTIIEMG-------LQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAA 229 (599)
Q Consensus 157 ~~~~~~~~~~~~~v~~~l~~l~-------L~~~~~~~vg~~~~~~LSGGerqRv~ia~aL~~~p~illlDEPtsgLD~~~ 229 (599)
..+.++ +.+.++..+ |++..||.||+ .+..||||||||++||||++++|+||+||||||+||+++
T Consensus 518 ---~~~~~~----v~~a~~~a~l~~~i~~lp~G~~T~vGe-~G~~LSGGQkQRiaiARAl~~~~~IliLDE~tSaLD~~t 589 (1321)
T 4f4c_A 518 ---GITREE----MVAACKMANAEKFIKTLPNGYNTLVGD-RGTQLSGGQKQRIAIARALVRNPKILLLDEATSALDAES 589 (1321)
T ss_dssp ---TCCHHH----HHHHHHHTTCHHHHHHSTTTTSSEESS-SSCCCCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCTTT
T ss_pred ---cchHHH----HHHHHHHccchhHHHcCCCCCccEecC-CCCCCCHHHHHHHHHHHHHccCCCEEEEecccccCCHHH
Confidence 123332 334444333 57788999998 556799999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhCCCEEEEEecCCchHHHhccCeEEEEeCCeEEEecChhhHHH
Q 007554 230 AFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAFE 284 (599)
Q Consensus 230 ~~~i~~~L~~l~~~g~tvi~~~H~p~~~i~~~~D~v~~L~~G~iv~~G~~~~~~~ 284 (599)
+..+.+.|+++. +|+|+|+++|+++ ..+.||+|++|++|++++.|+.+++..
T Consensus 590 e~~i~~~l~~~~-~~~T~iiiaHrls--~i~~aD~Iivl~~G~ive~Gth~eL~~ 641 (1321)
T 4f4c_A 590 EGIVQQALDKAA-KGRTTIIIAHRLS--TIRNADLIISCKNGQVVEVGDHRALMA 641 (1321)
T ss_dssp HHHHHHHHHHHH-TTSEEEEECSCTT--TTTTCSEEEEEETTEEEEEECHHHHHT
T ss_pred HHHHHHHHHHHh-CCCEEEEEcccHH--HHHhCCEEEEeeCCeeeccCCHHHHHH
Confidence 999999999886 4899999999985 468899999999999999999998764
No 45
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=100.00 E-value=1.8e-41 Score=410.93 Aligned_cols=251 Identities=27% Similarity=0.396 Sum_probs=200.2
Q ss_pred hhhhhhhhHHHhhhcCCCCCccccCCCCCchhhHHhhhhccccCCCcceeEEEEeEEEEEEccCCcccceeeceEEEEeC
Q 007554 2 RDSAASNVIMEIEASKPAGNSIVVGGLSPLSETIWKEKINTEFSGDVSARLTWKDLTVMVTLSNGETHNVLEGLTGYAEP 81 (599)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~ 81 (599)
++.+|++|+.++++.+|..+.....+.. + ......|+++|++++|+.+ .++++|+|+|+++++
T Consensus 353 ~~~~a~~ri~~~l~~~~~~~~~~~~~~~-----------~----~~~~g~i~~~~v~~~y~~~--~~~~vL~~isl~i~~ 415 (1284)
T 3g5u_A 353 NARGAAYEVFKIIDNKPSIDSFSKSGHK-----------P----DNIQGNLEFKNIHFSYPSR--KEVQILKGLNLKVKS 415 (1284)
T ss_dssp HHHHHHHHHHHTTSCCCCCSSCCSSCCC-----------C----TTCCCCEEEEEEEECCSST--TSCCSEEEEEEEECT
T ss_pred HHHHHHHHHHHHHcCCCcCCcccccCCC-----------C----CCCCCeEEEEEEEEEcCCC--CCCcceecceEEEcC
Confidence 5788999999999987765431111000 0 0112359999999988421 235799999999999
Q ss_pred CeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCC-----cCeEEEEcCCCCCCCCCCHHHHHHHHhhcc
Q 007554 82 GTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLS-----FGTAAYVTQDDNLIGTLTVRETISYSARLR 156 (599)
Q Consensus 82 Ge~~aI~G~sGsGKSTLl~~L~G~~~~~~~~~G~I~~~g~~~~~~-----~~~~~yv~Q~~~l~~~lTV~e~l~~~~~~~ 156 (599)
||++||+||||||||||+++|+|+++|+ +|+|.+||++.... ++.+|||+|++.+|+. ||+||+.++..
T Consensus 416 G~~~~ivG~sGsGKSTl~~ll~g~~~~~---~G~i~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~~-ti~eNi~~g~~-- 489 (1284)
T 3g5u_A 416 GQTVALVGNSGCGKSTTVQLMQRLYDPL---DGMVSIDGQDIRTINVRYLREIIGVVSQEPVLFAT-TIAENIRYGRE-- 489 (1284)
T ss_dssp TCEEEEECCSSSSHHHHHHHTTTSSCCS---EEEEEETTEEGGGSCHHHHHHHEEEECSSCCCCSS-CHHHHHHHHCS--
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCCCC---CeEEEECCEEHHhCCHHHHHhheEEEcCCCccCCc-cHHHHHhcCCC--
Confidence 9999999999999999999999999985 99999999985421 3569999999999987 99999999742
Q ss_pred CCCCCCHHHHHHHH-----HHHHHHcCCCccccccccCcccCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHH
Q 007554 157 LPDKMPWSEKRTLV-----ERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAF 231 (599)
Q Consensus 157 ~~~~~~~~~~~~~v-----~~~l~~l~L~~~~~~~vg~~~~~~LSGGerqRv~ia~aL~~~p~illlDEPtsgLD~~~~~ 231 (599)
..+.++..+.. .+.++ .+.+..||.+|+ .+.+||||||||++|||||+++|+||+||||||+||++++.
T Consensus 490 ---~~~~~~~~~~~~~~~~~~~i~--~l~~g~~t~~~~-~g~~LSgGq~QriaiARal~~~p~iliLDEpts~LD~~~~~ 563 (1284)
T 3g5u_A 490 ---DVTMDEIEKAVKEANAYDFIM--KLPHQFDTLVGE-RGAQLSGGQKQRIAIARALVRNPKILLLDEATSALDTESEA 563 (1284)
T ss_dssp ---SCCHHHHHHHHHHTTCHHHHH--HSTTGGGCCCSS-SSCSSCHHHHHHHHHHHHHHHCCSEEEEESTTCSSCHHHHH
T ss_pred ---CCCHHHHHHHHHHhCcHHHHH--hccccccccccC-CCCccCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHH
Confidence 12233222221 22232 345677899987 56789999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhCCCEEEEEecCCchHHHhccCeEEEEeCCeEEEecChhhHHH
Q 007554 232 FVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAFE 284 (599)
Q Consensus 232 ~i~~~L~~l~~~g~tvi~~~H~p~~~i~~~~D~v~~L~~G~iv~~G~~~~~~~ 284 (599)
.+.+.|+++. +|+|+|+++|++ +.+ ..||+|++|++|++++.|+++++.+
T Consensus 564 ~i~~~l~~~~-~~~t~i~itH~l-~~i-~~~d~i~vl~~G~i~~~g~~~~l~~ 613 (1284)
T 3g5u_A 564 VVQAALDKAR-EGRTTIVIAHRL-STV-RNADVIAGFDGGVIVEQGNHDELMR 613 (1284)
T ss_dssp HHHHHHHHHH-TTSEEEEECSCH-HHH-TTCSEEEECSSSCCCCEECHHHHHH
T ss_pred HHHHHHHHHc-CCCEEEEEecCH-HHH-HcCCEEEEEECCEEEEECCHHHHHh
Confidence 9999998875 589999999996 445 5599999999999999999998764
No 46
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=100.00 E-value=6.2e-41 Score=344.74 Aligned_cols=199 Identities=23% Similarity=0.357 Sum_probs=154.1
Q ss_pred eEEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCcCeE
Q 007554 51 RLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLSFGTA 130 (599)
Q Consensus 51 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~G~sGsGKSTLl~~L~G~~~~~~~~~G~I~~~g~~~~~~~~~~ 130 (599)
.++++||++. .+.+|+|+|+++++||+++|+||||||||||||+|+|+++|. +|+|.++| .+
T Consensus 40 ~l~~~~l~~~-------~~~vl~~isl~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~p~---~G~I~~~g--------~i 101 (290)
T 2bbs_A 40 SLSFSNFSLL-------GTPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPS---EGKIKHSG--------RI 101 (290)
T ss_dssp -----------------CCCSEEEEEEEECTTCEEEEEESTTSSHHHHHHHHTTSSCEE---EEEEECCS--------CE
T ss_pred eEEEEEEEEc-------CceEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCC---CcEEEECC--------EE
Confidence 4899999973 256999999999999999999999999999999999999885 99999987 48
Q ss_pred EEEcCCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCcc-------ccccccCcccCCCCHHHHHHH
Q 007554 131 AYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDC-------ADTVIGNWHLRGISGGERRRV 203 (599)
Q Consensus 131 ~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~l~L~~~-------~~~~vg~~~~~~LSGGerqRv 203 (599)
+||+|++.+++. ||+||+. +. . ... ..+.+.++.+++.+. .++.++. .+..||||||||+
T Consensus 102 ~~v~Q~~~l~~~-tv~enl~-~~--~----~~~----~~~~~~~~~~~l~~~l~~~~~~~~~~~~~-~~~~LSgGq~QRv 168 (290)
T 2bbs_A 102 SFCSQNSWIMPG-TIKENII-GV--S----YDE----YRYRSVIKACQLEEDISKFAEKDNIVLGE-GGITLSGGQRARI 168 (290)
T ss_dssp EEECSSCCCCSS-BHHHHHH-TT--C----CCH----HHHHHHHHHTTCHHHHHTSTTGGGCBC-----CCCCHHHHHHH
T ss_pred EEEeCCCccCcc-cHHHHhh-Cc--c----cch----HHHHHHHHHhChHHHHHhccccccchhcC-ccCcCCHHHHHHH
Confidence 999999998885 9999997 32 1 111 123334444555432 2333332 4578999999999
Q ss_pred HHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHH-HHHHhCCCEEEEEecCCchHHHhccCeEEEEeCCeEEEecChhhH
Q 007554 204 SIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTL-RCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAA 282 (599)
Q Consensus 204 ~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~L-~~l~~~g~tvi~~~H~p~~~i~~~~D~v~~L~~G~iv~~G~~~~~ 282 (599)
+|||+|+.+|++|||||||+|||+.++..+.+.+ +++. +|+|||++||++ ..+ ..||++++|++|++++.|+++++
T Consensus 169 ~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~ll~~~~-~~~tviivtHd~-~~~-~~~d~i~~l~~G~i~~~g~~~~l 245 (290)
T 2bbs_A 169 SLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLM-ANKTRILVTSKM-EHL-KKADKILILHEGSSYFYGTFSEL 245 (290)
T ss_dssp HHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHCCCCCT-TTSEEEEECCCH-HHH-HHSSEEEEEETTEEEEEECHHHH
T ss_pred HHHHHHHCCCCEEEEECCcccCCHHHHHHHHHHHHHHhh-CCCEEEEEecCH-HHH-HcCCEEEEEECCeEEEeCCHHHH
Confidence 9999999999999999999999999999999974 5554 489999999996 445 56999999999999999999876
Q ss_pred H
Q 007554 283 F 283 (599)
Q Consensus 283 ~ 283 (599)
.
T Consensus 246 ~ 246 (290)
T 2bbs_A 246 Q 246 (290)
T ss_dssp H
T ss_pred h
Confidence 4
No 47
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=100.00 E-value=2.2e-40 Score=401.49 Aligned_cols=251 Identities=27% Similarity=0.413 Sum_probs=199.9
Q ss_pred hhhhhhhhHHHhhhcCCCCCccccCCCCCchhhHHhhhhccccCCCcceeEEEEeEEEEEEccCCcccceeeceEEEEeC
Q 007554 2 RDSAASNVIMEIEASKPAGNSIVVGGLSPLSETIWKEKINTEFSGDVSARLTWKDLTVMVTLSNGETHNVLEGLTGYAEP 81 (599)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~ 81 (599)
++.+|++|+.++++.+|..+.....+.. + ......++++|+++.|+.+ .++++|+|+|+++++
T Consensus 996 ~~~~a~~ri~~~l~~~~~~~~~~~~~~~-----------~----~~~~g~i~~~~v~~~y~~~--~~~~~l~~vsl~i~~ 1058 (1284)
T 3g5u_A 996 KATVSASHIIRIIEKTPEIDSYSTQGLK-----------P----NMLEGNVQFSGVVFNYPTR--PSIPVLQGLSLEVKK 1058 (1284)
T ss_dssp HHHHHHHHHHHHHHSCCSSSSCCSSCCC-----------T----TTTSCCEEEEEEEBCCSCG--GGCCSBSSCCEEECS
T ss_pred HHHHHHHHHHHHHcCCCccccccccccc-----------c----cCCCCcEEEEEEEEECCCC--CCCeeecceeEEEcC
Confidence 5678999999999988775431111000 0 0112359999999988421 235699999999999
Q ss_pred CeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC-----CcCeEEEEcCCCCCCCCCCHHHHHHHHhhcc
Q 007554 82 GTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL-----SFGTAAYVTQDDNLIGTLTVRETISYSARLR 156 (599)
Q Consensus 82 Ge~~aI~G~sGsGKSTLl~~L~G~~~~~~~~~G~I~~~g~~~~~-----~~~~~~yv~Q~~~l~~~lTV~e~l~~~~~~~ 156 (599)
||++||+||||||||||+++|+|+++|. +|+|.+||++... .++.++||||++.+|+ .||+||+.++...+
T Consensus 1059 Ge~v~ivG~sGsGKSTl~~~l~g~~~p~---~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~-~ti~eNi~~~~~~~ 1134 (1284)
T 3g5u_A 1059 GQTLALVGSSGCGKSTVVQLLERFYDPM---AGSVFLDGKEIKQLNVQWLRAQLGIVSQEPILFD-CSIAENIAYGDNSR 1134 (1284)
T ss_dssp SSEEEEECSSSTTHHHHHHHHTTSSCCS---EEEEESSSSCTTSSCHHHHTTSCEEEESSCCCCS-SBHHHHHTCCCSSC
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCcCCC---CCEEEECCEEcccCCHHHHHhceEEECCCCcccc-ccHHHHHhccCCCC
Confidence 9999999999999999999999999985 9999999987542 1457999999998886 49999998763211
Q ss_pred CCCCCCHHHHHHHHHHHHHHc-------CCCccccccccCcccCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHH
Q 007554 157 LPDKMPWSEKRTLVERTIIEM-------GLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAA 229 (599)
Q Consensus 157 ~~~~~~~~~~~~~v~~~l~~l-------~L~~~~~~~vg~~~~~~LSGGerqRv~ia~aL~~~p~illlDEPtsgLD~~~ 229 (599)
..+.++. .+.++.. .+.+..||.+|+ .+..||||||||++|||+|+++|+||+|||||+|||+.+
T Consensus 1135 ---~~~~~~i----~~~~~~~~~~~~i~~l~~gldt~vge-~G~~LSgGq~Qrv~iARal~~~p~iLiLDEpTs~lD~~~ 1206 (1284)
T 3g5u_A 1135 ---VVSYEEI----VRAAKEANIHQFIDSLPDKYNTRVGD-KGTQLSGGQKQRIAIARALVRQPHILLLDEATSALDTES 1206 (1284)
T ss_dssp ---CCCHHHH----HHHHHHHTCHHHHSSTTTGGGCBCST-TSCSSCHHHHHHHHHHHHHHHCCSSEEEESCSSSCCHHH
T ss_pred ---CCCHHHH----HHHHHHhCcHHHHHhCccccccccCC-CCCccCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHH
Confidence 1223332 2222222 356678999987 567899999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhCCCEEEEEecCCchHHHhccCeEEEEeCCeEEEecChhhHHH
Q 007554 230 AFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAFE 284 (599)
Q Consensus 230 ~~~i~~~L~~l~~~g~tvi~~~H~p~~~i~~~~D~v~~L~~G~iv~~G~~~~~~~ 284 (599)
+..+.+.|+++ .+|+|||+++|++. .+ ..||+|++|++|++++.|+++++.+
T Consensus 1207 ~~~i~~~l~~~-~~~~tvi~isH~l~-~i-~~~dri~vl~~G~i~~~g~~~~l~~ 1258 (1284)
T 3g5u_A 1207 EKVVQEALDKA-REGRTCIVIAHRLS-TI-QNADLIVVIQNGKVKEHGTHQQLLA 1258 (1284)
T ss_dssp HHHHHHHHHHH-SSSSCEEEECSCTT-GG-GSCSEEEEEETBEEEEEECHHHHHH
T ss_pred HHHHHHHHHHh-CCCCEEEEEecCHH-HH-HcCCEEEEEECCEEEEECCHHHHHh
Confidence 99999999886 45899999999975 44 6699999999999999999988764
No 48
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=100.00 E-value=6.8e-37 Score=344.01 Aligned_cols=206 Identities=24% Similarity=0.282 Sum_probs=177.1
Q ss_pred ceeEEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCcC
Q 007554 49 SARLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLSFG 128 (599)
Q Consensus 49 ~~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~G~sGsGKSTLl~~L~G~~~~~~~~~G~I~~~g~~~~~~~~ 128 (599)
...++++|+++.+ ++ ..|+++|+++++||+++|+||||||||||||+|+|+++|+ +|+|.+ ..
T Consensus 355 ~~~l~~~~l~~~~-----~~-~~l~~~~~~v~~Gei~~i~G~NGsGKSTLlk~l~Gl~~p~---~G~I~~--------~~ 417 (607)
T 3bk7_A 355 ETLVEYPRLVKDY-----GS-FKLEVEPGEIRKGEVIGIVGPNGIGKTTFVKMLAGVEEPT---EGKVEW--------DL 417 (607)
T ss_dssp CEEEEECCEEEEC-----SS-CEEEECCEEEETTCEEEEECCTTSSHHHHHHHHHTSSCCS---BSCCCC--------CC
T ss_pred ceEEEEeceEEEe-----cc-eEEEecccccCCCCEEEEECCCCCCHHHHHHHHhcCCCCC---ceEEEE--------ee
Confidence 3569999999877 22 3699999999999999999999999999999999999885 899876 14
Q ss_pred eEEEEcCCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHHHHHHHH
Q 007554 129 TAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALE 208 (599)
Q Consensus 129 ~~~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSGGerqRv~ia~a 208 (599)
.++|++|+....+.+||.|++....... ....++++++++.+||.+..++.+ ..|||||||||+|||+
T Consensus 418 ~i~~v~Q~~~~~~~~tv~e~~~~~~~~~-------~~~~~~~~~~l~~~~l~~~~~~~~-----~~LSGGe~QRv~iAra 485 (607)
T 3bk7_A 418 TVAYKPQYIKAEYEGTVYELLSKIDSSK-------LNSNFYKTELLKPLGIIDLYDRNV-----EDLSGGELQRVAIAAT 485 (607)
T ss_dssp CEEEECSSCCCCCSSBHHHHHHHHHHHH-------HHCHHHHHHTHHHHTCTTTTTSBG-----GGCCHHHHHHHHHHHH
T ss_pred EEEEEecCccCCCCCcHHHHHHhhhccC-------CCHHHHHHHHHHHcCCchHhcCCh-----hhCCHHHHHHHHHHHH
Confidence 5899999988778899999987641110 011356788999999988777755 4699999999999999
Q ss_pred HhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCCchHHHhccCeEEEEeC--CeEEEecChhhHHH
Q 007554 209 ILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSR-DGRTVIASIHQPSSEVFELFDRLYLLSG--GKTVYFGETSAAFE 284 (599)
Q Consensus 209 L~~~p~illlDEPtsgLD~~~~~~i~~~L~~l~~-~g~tvi~~~H~p~~~i~~~~D~v~~L~~--G~iv~~G~~~~~~~ 284 (599)
|+.+|++|||||||+|||+.++..+.+.|+++++ +|.|||+++||+ ..+..+||++++|++ |+++..|+++++..
T Consensus 486 L~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vsHd~-~~~~~~adrv~vl~~~~g~~~~~g~p~~~~~ 563 (607)
T 3bk7_A 486 LLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHDV-LMIDYVSDRLIVFEGEPGRHGRALPPMGMRE 563 (607)
T ss_dssp HTSCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHHTTCEEEEECSCH-HHHHHHCSEEEEEEEETTTEEEECCCEEHHH
T ss_pred HHhCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCH-HHHHHhCCEEEEEcCCcceEEecCCHHHHHh
Confidence 9999999999999999999999999999999974 689999999995 678899999999986 88889999988765
No 49
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=100.00 E-value=5.7e-37 Score=340.94 Aligned_cols=206 Identities=26% Similarity=0.291 Sum_probs=175.9
Q ss_pred ceeEEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCcC
Q 007554 49 SARLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLSFG 128 (599)
Q Consensus 49 ~~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~G~sGsGKSTLl~~L~G~~~~~~~~~G~I~~~g~~~~~~~~ 128 (599)
...++++|+++.+ ++ ..|+++|+++++||+++|+||||||||||+|+|+|+++|. +|+|.+ ..
T Consensus 285 ~~~l~~~~l~~~~-----~~-~~l~~~~~~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~p~---~G~i~~--------~~ 347 (538)
T 1yqt_A 285 ETLVTYPRLVKDY-----GS-FRLEVEPGEIKKGEVIGIVGPNGIGKTTFVKMLAGVEEPT---EGKIEW--------DL 347 (538)
T ss_dssp CEEEEECCEEEEE-----TT-EEEEECCEEEETTCEEEEECCTTSSHHHHHHHHHTSSCCS---BCCCCC--------CC
T ss_pred CeEEEEeeEEEEE-----CC-EEEEeCccccCCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CeEEEE--------Cc
Confidence 3569999999887 22 3699999999999999999999999999999999999885 899875 13
Q ss_pred eEEEEcCCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHHHHHHHH
Q 007554 129 TAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALE 208 (599)
Q Consensus 129 ~~~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSGGerqRv~ia~a 208 (599)
.++||+|+....+.+||.|++......... ..++++++++.+++.+..++.+ ..|||||||||+|||+
T Consensus 348 ~i~~v~Q~~~~~~~~tv~~~~~~~~~~~~~-------~~~~~~~~l~~~~l~~~~~~~~-----~~LSGGe~qrv~lAra 415 (538)
T 1yqt_A 348 TVAYKPQYIKADYEGTVYELLSKIDASKLN-------SNFYKTELLKPLGIIDLYDREV-----NELSGGELQRVAIAAT 415 (538)
T ss_dssp CEEEECSSCCCCCSSBHHHHHHHHHHHHHT-------CHHHHHHTTTTTTCGGGTTSBG-----GGCCHHHHHHHHHHHH
T ss_pred eEEEEecCCcCCCCCcHHHHHHhhhccCCC-------HHHHHHHHHHHcCChhhhcCCh-----hhCCHHHHHHHHHHHH
Confidence 589999998777889999988754111100 1245778899999987777654 5799999999999999
Q ss_pred HhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCCchHHHhccCeEEEEeC--CeEEEecChhhHHH
Q 007554 209 ILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSR-DGRTVIASIHQPSSEVFELFDRLYLLSG--GKTVYFGETSAAFE 284 (599)
Q Consensus 209 L~~~p~illlDEPtsgLD~~~~~~i~~~L~~l~~-~g~tvi~~~H~p~~~i~~~~D~v~~L~~--G~iv~~G~~~~~~~ 284 (599)
|+.+|++|||||||+|||+.++..+.+.|+++++ .|.|||++|||+ +++..+||++++|++ |+++..|+++++..
T Consensus 416 L~~~p~lLlLDEPt~~LD~~~~~~i~~~l~~l~~~~g~tvi~vsHd~-~~~~~~~drv~vl~~~~~~~~~~g~~~~~~~ 493 (538)
T 1yqt_A 416 LLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHDV-LMIDYVSDRLMVFEGEPGKYGRALPPMGMRE 493 (538)
T ss_dssp HTSCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHHHTCEEEEECSCH-HHHHHHCSEEEEEEEETTTEEEECCCEEHHH
T ss_pred HHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCH-HHHHHhCCEEEEEeCCcceEeecCCHHHHHh
Confidence 9999999999999999999999999999999974 589999999995 688899999999986 88999999988765
No 50
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=100.00 E-value=3.6e-36 Score=333.91 Aligned_cols=207 Identities=20% Similarity=0.286 Sum_probs=174.2
Q ss_pred ceeEEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCcC
Q 007554 49 SARLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLSFG 128 (599)
Q Consensus 49 ~~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~G~sGsGKSTLl~~L~G~~~~~~~~~G~I~~~g~~~~~~~~ 128 (599)
...++++|+++.+ + ...|+++|+++++||+++|+||||||||||+|+|+|+++|+ +|+|.++| .
T Consensus 267 ~~~l~~~~l~~~~-----~-~~~l~~~~~~i~~Gei~~i~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~~-------~ 330 (538)
T 3ozx_A 267 KTKMKWTKIIKKL-----G-DFQLVVDNGEAKEGEIIGILGPNGIGKTTFARILVGEITAD---EGSVTPEK-------Q 330 (538)
T ss_dssp CEEEEECCEEEEE-----T-TEEEEECCEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCS---BCCEESSC-------C
T ss_pred cceEEEcceEEEE-----C-CEEEEeccceECCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CcEEEECC-------e
Confidence 4568999999887 2 24688889999999999999999999999999999999985 99998765 3
Q ss_pred eEEEEcCCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHHHHHHHH
Q 007554 129 TAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALE 208 (599)
Q Consensus 129 ~~~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSGGerqRv~ia~a 208 (599)
.++|++|+......+||+||+.+...... .. ....++++++.++|.+..++.+ ..|||||||||+|||+
T Consensus 331 ~i~~~~q~~~~~~~~tv~~~l~~~~~~~~----~~--~~~~~~~~l~~~~l~~~~~~~~-----~~LSGGq~QRv~iAra 399 (538)
T 3ozx_A 331 ILSYKPQRIFPNYDGTVQQYLENASKDAL----ST--SSWFFEEVTKRLNLHRLLESNV-----NDLSGGELQKLYIAAT 399 (538)
T ss_dssp CEEEECSSCCCCCSSBHHHHHHHHCSSTT----CT--TSHHHHHTTTTTTGGGCTTSBG-----GGCCHHHHHHHHHHHH
T ss_pred eeEeechhcccccCCCHHHHHHHhhhhcc----ch--hHHHHHHHHHHcCCHHHhcCCh-----hhCCHHHHHHHHHHHH
Confidence 58999999776668899999987422111 01 1245678889999988777754 5799999999999999
Q ss_pred HhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCCchHHHhccCeEEEEeC--CeEEEecChhhHH
Q 007554 209 ILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSR-DGRTVIASIHQPSSEVFELFDRLYLLSG--GKTVYFGETSAAF 283 (599)
Q Consensus 209 L~~~p~illlDEPtsgLD~~~~~~i~~~L~~l~~-~g~tvi~~~H~p~~~i~~~~D~v~~L~~--G~iv~~G~~~~~~ 283 (599)
|+.+|++|||||||+|||+.++..+.+.|+++++ .|.|||++|||+ +++..+||+|++|++ |.....+++.++.
T Consensus 400 L~~~p~lLlLDEPT~gLD~~~~~~i~~~l~~l~~~~g~tvi~vsHdl-~~~~~~aDri~vl~~~~~~~~~~~~~~~~~ 476 (538)
T 3ozx_A 400 LAKEADLYVLDQPSSYLDVEERYIVAKAIKRVTRERKAVTFIIDHDL-SIHDYIADRIIVFKGEPEKAGLATSPVTLK 476 (538)
T ss_dssp HHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHHTTCEEEEECSCH-HHHHHHCSEEEEEEEETTTEEEECCCEEHH
T ss_pred HHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCH-HHHHHhCCEEEEEeCCcceeccCCChHHHH
Confidence 9999999999999999999999999999999975 689999999995 688899999999985 6677777765544
No 51
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3.5e-35 Score=329.64 Aligned_cols=202 Identities=20% Similarity=0.265 Sum_probs=166.8
Q ss_pred EeEEEEEEccCCcccceeeceEEEEeCC-----eEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCcCe
Q 007554 55 KDLTVMVTLSNGETHNVLEGLTGYAEPG-----TLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLSFGT 129 (599)
Q Consensus 55 ~~ls~~~~~~~~~~~~iL~~vs~~i~~G-----e~~aI~G~sGsGKSTLl~~L~G~~~~~~~~~G~I~~~g~~~~~~~~~ 129 (599)
+++++.+. ..+.+++++|+++.+| |+++|+||||||||||+++|+|+++|+ +|+. . ....
T Consensus 350 ~~~~~~y~----~~~~~l~~vsl~v~~G~~~~GEiv~iiG~NGsGKSTLlk~l~Gl~~p~---~G~~------~--~~~~ 414 (608)
T 3j16_B 350 ASRAFSYP----SLKKTQGDFVLNVEEGEFSDSEILVMMGENGTGKTTLIKLLAGALKPD---EGQD------I--PKLN 414 (608)
T ss_dssp SSSCCEEC----CEEEECSSCEEEECCEECCTTCEEEEESCTTSSHHHHHHHHHTSSCCS---BCCC------C--CSCC
T ss_pred cceeEEec----CcccccCceEEEEecCccccceEEEEECCCCCcHHHHHHHHhcCCCCC---CCcC------c--cCCc
Confidence 34455552 2345789999999998 789999999999999999999999985 7752 1 1246
Q ss_pred EEEEcCCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHHHHHHHHH
Q 007554 130 AAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEI 209 (599)
Q Consensus 130 ~~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSGGerqRv~ia~aL 209 (599)
++|++|+.......||+|++.... + .... ....++++++.++|.+..++.+ ..|||||||||+|||+|
T Consensus 415 i~~~~q~~~~~~~~tv~e~~~~~~--~--~~~~---~~~~~~~~l~~l~l~~~~~~~~-----~~LSGGqkQRv~iAraL 482 (608)
T 3j16_B 415 VSMKPQKIAPKFPGTVRQLFFKKI--R--GQFL---NPQFQTDVVKPLRIDDIIDQEV-----QHLSGGELQRVAIVLAL 482 (608)
T ss_dssp EEEECSSCCCCCCSBHHHHHHHHC--S--STTT---SHHHHHHTHHHHTSTTTSSSBS-----SSCCHHHHHHHHHHHHT
T ss_pred EEEecccccccCCccHHHHHHHHh--h--cccc---cHHHHHHHHHHcCChhhhcCCh-----hhCCHHHHHHHHHHHHH
Confidence 899999976666679999876432 1 1111 1245678899999998887754 57999999999999999
Q ss_pred hhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCCchHHHhccCeEEEEeC--CeEEEecChhhHHH
Q 007554 210 LMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSR-DGRTVIASIHQPSSEVFELFDRLYLLSG--GKTVYFGETSAAFE 284 (599)
Q Consensus 210 ~~~p~illlDEPtsgLD~~~~~~i~~~L~~l~~-~g~tvi~~~H~p~~~i~~~~D~v~~L~~--G~iv~~G~~~~~~~ 284 (599)
+.+|++|||||||+|||+.++..+.+.|+++++ .|.|||++|||+ +++..+||||++|++ |+++..|++++++.
T Consensus 483 ~~~p~lLlLDEPT~gLD~~~~~~i~~ll~~l~~~~g~tviivtHdl-~~~~~~aDrvivl~~~~g~~~~~g~p~~~~~ 559 (608)
T 3j16_B 483 GIPADIYLIDEPSAYLDSEQRIICSKVIRRFILHNKKTAFIVEHDF-IMATYLADKVIVFEGIPSKNAHARAPESLLT 559 (608)
T ss_dssp TSCCSEEEECCTTTTCCHHHHHHHHHHHHHHHHHHTCEEEEECSCH-HHHHHHCSEEEECEEETTTEEECCCCEEHHH
T ss_pred HhCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCH-HHHHHhCCEEEEEeCCCCeEEecCChHHHhh
Confidence 999999999999999999999999999999864 699999999995 688899999999986 99999999988765
No 52
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=100.00 E-value=4.6e-34 Score=331.86 Aligned_cols=200 Identities=22% Similarity=0.316 Sum_probs=166.1
Q ss_pred ceeEEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCcC
Q 007554 49 SARLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLSFG 128 (599)
Q Consensus 49 ~~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~G~sGsGKSTLl~~L~G~~~~~~~~~G~I~~~g~~~~~~~~ 128 (599)
...+...|+++.| +++.+|+|+|+++++|++++|+||||||||||||+|+| |+| +|.+.... .
T Consensus 433 ~~~L~~~~ls~~y-----g~~~iL~~vsl~I~~Ge~v~LiGpNGsGKSTLLk~Lag---------G~i--~g~~~~~~-~ 495 (986)
T 2iw3_A 433 GEDLCNCEFSLAY-----GAKILLNKTQLRLKRARRYGICGPNGCGKSTLMRAIAN---------GQV--DGFPTQEE-C 495 (986)
T ss_dssp SCEEEEEEEEEEE-----TTEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHH---------TCS--TTCCCTTT-S
T ss_pred cceeEEeeEEEEE-----CCEEeEecceEEEcCCCEEEEECCCCCCHHHHHHHHhC---------CCc--CCCccccc-e
Confidence 3467778999888 35779999999999999999999999999999999995 222 34332111 2
Q ss_pred eEEEEcCCC-CCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCC-ccccccccCcccCCCCHHHHHHHHHH
Q 007554 129 TAAYVTQDD-NLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQ-DCADTVIGNWHLRGISGGERRRVSIA 206 (599)
Q Consensus 129 ~~~yv~Q~~-~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~l~L~-~~~~~~vg~~~~~~LSGGerqRv~ia 206 (599)
.++|++|+. .+++.+||.|++.+ .. . .. +++++++++.+||. +..++.+ .+||||||||++||
T Consensus 496 ~~~~v~q~~~~~~~~ltv~e~l~~--~~--~-~~-----~~~v~~~L~~lgL~~~~~~~~~-----~~LSGGqkQRvaLA 560 (986)
T 2iw3_A 496 RTVYVEHDIDGTHSDTSVLDFVFE--SG--V-GT-----KEAIKDKLIEFGFTDEMIAMPI-----SALSGGWKMKLALA 560 (986)
T ss_dssp CEEETTCCCCCCCTTSBHHHHHHT--TC--S-SC-----HHHHHHHHHHTTCCHHHHHSBG-----GGCCHHHHHHHHHH
T ss_pred eEEEEcccccccccCCcHHHHHHH--hh--c-CH-----HHHHHHHHHHcCCChhhhcCCc-----ccCCHHHHHHHHHH
Confidence 468999984 67889999999975 11 1 11 46688899999995 5666655 46999999999999
Q ss_pred HHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhccCeEEEEeCCeEE-EecChhhHHH
Q 007554 207 LEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTV-YFGETSAAFE 284 (599)
Q Consensus 207 ~aL~~~p~illlDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~p~~~i~~~~D~v~~L~~G~iv-~~G~~~~~~~ 284 (599)
|+|+.+|++|||||||+|||+.++..+.+.|++ .|.|||++|||+ ..+.++||++++|++|+++ +.|++++...
T Consensus 561 rAL~~~P~lLLLDEPTs~LD~~~~~~l~~~L~~---~g~tvIivSHdl-~~l~~~adrii~L~~G~iv~~~G~~~e~~~ 635 (986)
T 2iw3_A 561 RAVLRNADILLLDEPTNHLDTVNVAWLVNYLNT---CGITSITISHDS-VFLDNVCEYIINYEGLKLRKYKGNFTEFVK 635 (986)
T ss_dssp HHHHTTCSEEEEESTTTTCCHHHHHHHHHHHHH---SCSEEEEECSCH-HHHHHHCSEEEEEETTEEEEEESCHHHHHH
T ss_pred HHHhcCCCEEEEECCccCCCHHHHHHHHHHHHh---CCCEEEEEECCH-HHHHHhCCEEEEEECCeeecCCCCHHHHHh
Confidence 999999999999999999999999999999988 589999999995 6788999999999999997 7899887654
No 53
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=100.00 E-value=3.3e-35 Score=330.37 Aligned_cols=192 Identities=26% Similarity=0.355 Sum_probs=156.3
Q ss_pred EeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEE---------EECCEeCCC
Q 007554 55 KDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTI---------LLNGHKTKL 125 (599)
Q Consensus 55 ~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~G~sGsGKSTLl~~L~G~~~~~~~~~G~I---------~~~g~~~~~ 125 (599)
+||++.|. +...+|+|+| ++++||+++|+||||||||||||+|+|+++|+ +|++ .++|.+...
T Consensus 95 ~~ls~~yg----~~~~~l~~vs-~i~~Ge~~~LiG~NGsGKSTLlkiL~Gll~p~---~G~~~~~~~~~~~~~~G~~~~~ 166 (607)
T 3bk7_A 95 EDCVHRYG----VNAFVLYRLP-IVKDGMVVGIVGPNGTGKTTAVKILAGQLIPN---LCEDNDSWDNVIRAFRGNELQN 166 (607)
T ss_dssp GSEEEECS----TTCCEEECCC-CCCTTSEEEEECCTTSSHHHHHHHHTTSSCCC---TTTTCCCHHHHHHHTTTSTHHH
T ss_pred CCeEEEEC----CCCeeeCCCC-CCCCCCEEEEECCCCChHHHHHHHHhCCCCCC---CCccccccchhhheeCCEehhh
Confidence 67777762 2225899999 99999999999999999999999999999886 7875 456653210
Q ss_pred -------CcCeEEEEcCCCCCCC---CCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCC
Q 007554 126 -------SFGTAAYVTQDDNLIG---TLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGI 195 (599)
Q Consensus 126 -------~~~~~~yv~Q~~~l~~---~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~L 195 (599)
....+++++|.....+ ..||+|++... .. .++++++++.+||++..|+.+ ++|
T Consensus 167 ~~~~~~~~~~~i~~~~q~~~~~~~~~~~tv~e~l~~~------~~------~~~~~~~L~~lgL~~~~~~~~-----~~L 229 (607)
T 3bk7_A 167 YFERLKNGEIRPVVKPQYVDLLPKAVKGKVRELLKKV------DE------VGKFEEVVKELELENVLDREL-----HQL 229 (607)
T ss_dssp HHHHHHHTSCCCEEECSCGGGGGGTCCSBHHHHHHHT------CC------SSCHHHHHHHTTCTTGGGSBG-----GGC
T ss_pred hhhhhhhhhcceEEeechhhhchhhccccHHHHhhhh------HH------HHHHHHHHHHcCCCchhCCCh-----hhC
Confidence 1234789998743322 13999998641 00 134678999999998888755 469
Q ss_pred CHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhccCeEEEEeCCe
Q 007554 196 SGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGK 272 (599)
Q Consensus 196 SGGerqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~p~~~i~~~~D~v~~L~~G~ 272 (599)
||||||||+|||||+.+|++|||||||+|||+.++..+.+.|++++++|.|||+++||+ ..+..++|+|++|+++.
T Consensus 230 SGGekQRvaIAraL~~~P~lLlLDEPTs~LD~~~~~~l~~~L~~l~~~g~tvIivsHdl-~~~~~~adri~vl~~~~ 305 (607)
T 3bk7_A 230 SGGELQRVAIAAALLRKAHFYFFDEPSSYLDIRQRLKVARVIRRLANEGKAVLVVEHDL-AVLDYLSDVIHVVYGEP 305 (607)
T ss_dssp CHHHHHHHHHHHHHHSCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCH-HHHHHHCSEEEEEESCT
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHHhcCCEEEEEecCh-HHHHhhCCEEEEECCCc
Confidence 99999999999999999999999999999999999999999999987899999999995 67888999999998653
No 54
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=100.00 E-value=1.7e-34 Score=329.93 Aligned_cols=208 Identities=27% Similarity=0.314 Sum_probs=140.0
Q ss_pred ccceeeceEEEEeCCeEEEEECCCCCcHHHHH---------------------HHHHcCCCCCC----CceeEEEECCEe
Q 007554 68 THNVLEGLTGYAEPGTLTALMGPSGSGKSTLL---------------------DALSSRLASNA----FLSGTILLNGHK 122 (599)
Q Consensus 68 ~~~iL~~vs~~i~~Ge~~aI~G~sGsGKSTLl---------------------~~L~G~~~~~~----~~~G~I~~~g~~ 122 (599)
.+++|+|||+++++||+++|+||||||||||+ +++.|+..|+. ...|.|.++|.+
T Consensus 30 ~~~~L~~vsl~i~~Ge~~~liGpNGaGKSTLl~~~~~~~~~~~~~~~l~~~~~~~l~~l~~~~~~~i~~~~~~i~~~~~~ 109 (670)
T 3ux8_A 30 RAHNLKNIDVEIPRGKLVVLTGLSGSGKSSLAFDTIYAEGQRRYVESLSAYARQFLGQMEKPDVDAIEGLSPAISIDQKT 109 (670)
T ss_dssp CSTTCCSEEEEEETTSEEEEECSTTSSHHHHHTTTHHHHHHHHHHTC--------------CCCSEEESCCCEEEESSCC
T ss_pred CccceeccEEEECCCCEEEEECCCCCCHHHHhcccccccccccccccchhhhhhhhcccccCCccceeccccceEecCch
Confidence 46799999999999999999999999999998 78888776641 114667777754
Q ss_pred CCC-CcCeEEEEcCCCC-------------------CCCCCCHHHHHHHHhhccCCCCCCH------HHHHHHHHHHHHH
Q 007554 123 TKL-SFGTAAYVTQDDN-------------------LIGTLTVRETISYSARLRLPDKMPW------SEKRTLVERTIIE 176 (599)
Q Consensus 123 ~~~-~~~~~~yv~Q~~~-------------------l~~~lTV~e~l~~~~~~~~~~~~~~------~~~~~~v~~~l~~ 176 (599)
... ....++||+|... .++.+||+||+.+............ .+..++ .+.++.
T Consensus 110 ~~~~~~~~ig~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~~ 188 (670)
T 3ux8_A 110 TSRNPRSTVGTVTEIYDYLRLLFARIGRLVGGKHIGEVTAMSVTEALAFFDGLELTEKEAQIARLILREIRDR-LGFLQN 188 (670)
T ss_dssp -----CCBHHHHTTCC-------------------------CC--------------------------CHHH-HHHHHH
T ss_pred hhccchhceeeeechhhhHHHHHhhhcccccccccccccCCcHHHHHHHhhccccchhhhHHHHHHHHHHHHH-HHHHHH
Confidence 321 1234455555432 2467899999987533221110000 001111 235888
Q ss_pred cCCCcc-ccccccCcccCCCCHHHHHHHHHHHHHhhCCC--EEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecC
Q 007554 177 MGLQDC-ADTVIGNWHLRGISGGERRRVSIALEILMRPR--LLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQ 253 (599)
Q Consensus 177 l~L~~~-~~~~vg~~~~~~LSGGerqRv~ia~aL~~~p~--illlDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~ 253 (599)
+||.+. .++.+ .+|||||||||+|||||+.+|+ +|||||||+|||+.++..+++.|++++++|.|||++|||
T Consensus 189 ~gL~~~~~~~~~-----~~LSGGe~QRv~iArAL~~~p~~~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~g~tvi~vtHd 263 (670)
T 3ux8_A 189 VGLDYLTLSRSA-----GTLSGGEAQRIRLATQIGSRLTGVLYVLDEPSIGLHQRDNDRLIATLKSMRDLGNTLIVVEHD 263 (670)
T ss_dssp TTCTTCCTTCBG-----GGSCHHHHHHHHHHHHHHTCCCSCEEEEECTTTTCCGGGHHHHHHHHHHHHHTTCEEEEECCC
T ss_pred cCCchhhhcCCc-----ccCCHHHHHHHHHHHHHhhCCCCCEEEEECCccCCCHHHHHHHHHHHHHHHHcCCEEEEEeCC
Confidence 999764 46644 5799999999999999999998 999999999999999999999999998889999999999
Q ss_pred CchHHHhccCeEEEE------eCCeEEEecChhhHH
Q 007554 254 PSSEVFELFDRLYLL------SGGKTVYFGETSAAF 283 (599)
Q Consensus 254 p~~~i~~~~D~v~~L------~~G~iv~~G~~~~~~ 283 (599)
+ .. ...||++++| ++|++++.|+++++.
T Consensus 264 ~-~~-~~~~d~ii~l~~g~~~~~G~i~~~g~~~~~~ 297 (670)
T 3ux8_A 264 E-DT-MLAADYLIDIGPGAGIHGGEVVAAGTPEEVM 297 (670)
T ss_dssp H-HH-HHHCSEEEEECSSSGGGCCSEEEEECHHHHH
T ss_pred H-HH-HhhCCEEEEecccccccCCEEEEecCHHHHh
Confidence 6 44 5569999999 899999999998765
No 55
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=100.00 E-value=3.8e-35 Score=326.28 Aligned_cols=194 Identities=25% Similarity=0.323 Sum_probs=156.4
Q ss_pred EEE-EeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEE---------EECCE
Q 007554 52 LTW-KDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTI---------LLNGH 121 (599)
Q Consensus 52 l~~-~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~G~sGsGKSTLl~~L~G~~~~~~~~~G~I---------~~~g~ 121 (599)
.++ +||+++|. +...+|+|+| ++++||+++|+||||||||||+|+|+|+++|+ +|++ .++|.
T Consensus 21 ~~~~~~ls~~yg----~~~~~l~~vs-~i~~Ge~~~LvG~NGaGKSTLlk~l~Gl~~p~---~G~~~~~~~~~~~~~~g~ 92 (538)
T 1yqt_A 21 EQLEEDCVHRYG----VNAFVLYRLP-VVKEGMVVGIVGPNGTGKSTAVKILAGQLIPN---LCGDNDSWDGVIRAFRGN 92 (538)
T ss_dssp ---CCCEEEECS----TTCCEEECCC-CCCTTSEEEEECCTTSSHHHHHHHHHTSSCCC---TTTTCCSHHHHHHHTTTS
T ss_pred hhHhcCcEEEEC----CccccccCcC-cCCCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CCccCcchhhhHHhhCCc
Confidence 444 58888772 2225899999 99999999999999999999999999999885 7875 35665
Q ss_pred eCC-------CCcCeEEEEcCCCCCCCC---CCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcc
Q 007554 122 KTK-------LSFGTAAYVTQDDNLIGT---LTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWH 191 (599)
Q Consensus 122 ~~~-------~~~~~~~yv~Q~~~l~~~---lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~ 191 (599)
+.. .....+++++|+...++. .|+.|++.... ..++++++++.+||.+..++.+
T Consensus 93 ~~~~~~~~~~~~~~~~~~~~q~~~~~~~~~~~~v~e~~~~~~------------~~~~~~~~l~~lgl~~~~~~~~---- 156 (538)
T 1yqt_A 93 ELQNYFEKLKNGEIRPVVKPQYVDLIPKAVKGKVIELLKKAD------------ETGKLEEVVKALELENVLEREI---- 156 (538)
T ss_dssp THHHHHHHHHTTSCCCEEECSCGGGSGGGCCSBHHHHHHHHC------------SSSCHHHHHHHTTCTTTTTSBG----
T ss_pred cHHHHHHHHHHHhhhhhhhhhhhhhcchhhhccHHHHHhhhh------------HHHHHHHHHHHcCCChhhhCCh----
Confidence 321 112357899997544332 38999885320 0134778999999988777755
Q ss_pred cCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhccCeEEEEeCC
Q 007554 192 LRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGG 271 (599)
Q Consensus 192 ~~~LSGGerqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~p~~~i~~~~D~v~~L~~G 271 (599)
.+|||||||||+||+||+.+|++|||||||++||+.++..+.+.|++++++|.|||++||++ ..+..+||+|++|++|
T Consensus 157 -~~LSgGekQRv~iAraL~~~P~lLlLDEPTs~LD~~~~~~l~~~L~~l~~~g~tvi~vsHd~-~~~~~~~dri~vl~~~ 234 (538)
T 1yqt_A 157 -QHLSGGELQRVAIAAALLRNATFYFFDEPSSYLDIRQRLNAARAIRRLSEEGKSVLVVEHDL-AVLDYLSDIIHVVYGE 234 (538)
T ss_dssp -GGCCHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCH-HHHHHHCSEEEEEEEE
T ss_pred -hhCCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHHHHhCCEEEEEcCc
Confidence 56999999999999999999999999999999999999999999999988899999999995 6888999999999865
No 56
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=100.00 E-value=3.7e-34 Score=332.60 Aligned_cols=208 Identities=24% Similarity=0.358 Sum_probs=163.2
Q ss_pred eeEEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCcCe
Q 007554 50 ARLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLSFGT 129 (599)
Q Consensus 50 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~G~sGsGKSTLl~~L~G~~~~~~~~~G~I~~~g~~~~~~~~~ 129 (599)
..|+++|+++.|. +..+.+|+|+|+++++||+++|+||||||||||+|+|+|+++|+ +|+|.++|. ..
T Consensus 670 ~mL~v~nLs~~Y~---g~~~~iL~dVSl~I~~GeivaIiGpNGSGKSTLLklLaGll~P~---sG~I~~~~~------~~ 737 (986)
T 2iw3_A 670 AIVKVTNMEFQYP---GTSKPQITDINFQCSLSSRIAVIGPNGAGKSTLINVLTGELLPT---SGEVYTHEN------CR 737 (986)
T ss_dssp EEEEEEEEEECCT---TCSSCSEEEEEEEEETTCEEEECSCCCHHHHHHHHHHTTSSCCS---EEEEEECTT------CC
T ss_pred ceEEEEeeEEEeC---CCCceeeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEEcCc------cc
Confidence 4599999998872 12367999999999999999999999999999999999999886 999999863 24
Q ss_pred EEEEcCCCCC----CCCCCHHHHHHHHhhcc------------CC-----------------------------------
Q 007554 130 AAYVTQDDNL----IGTLTVRETISYSARLR------------LP----------------------------------- 158 (599)
Q Consensus 130 ~~yv~Q~~~l----~~~lTV~e~l~~~~~~~------------~~----------------------------------- 158 (599)
++|++|++.. ....|++|++.+..... ..
T Consensus 738 I~yv~Q~~~~~l~~~~~~t~~e~i~~~~q~g~d~~~~~~~~~~l~~ed~~~~~~~~~~~g~~r~~~~i~~r~~~~~~~~~ 817 (986)
T 2iw3_A 738 IAYIKQHAFAHIESHLDKTPSEYIQWRFQTGEDRETMDRANRQINENDAEAMNKIFKIEGTPRRIAGIHSRRKFKNTYEY 817 (986)
T ss_dssp EEEECHHHHHHGGGCTTSCHHHHHHHHTTTSSCTTTTTTTSCCCCSSCSSGGGCCEEETTEEEEEEEEEEEEEETTEEEE
T ss_pred eEeeccchhhhhhcccccCHHHHHHHHhhccchhhhhhhhhhccchhhhhhhhcccccccchhhhhhhhhhhhhcccchh
Confidence 8999997521 22458888876532100 00
Q ss_pred -----------------CCC--------C--------------------------HHHHHHHHHHHHHHcCCCcc--ccc
Q 007554 159 -----------------DKM--------P--------------------------WSEKRTLVERTIIEMGLQDC--ADT 185 (599)
Q Consensus 159 -----------------~~~--------~--------------------------~~~~~~~v~~~l~~l~L~~~--~~~ 185 (599)
... . +...+++++++++.+||.+. .++
T Consensus 818 e~~~sv~ENi~l~~~~~~~lt~~en~~~~~~~l~~~~~~~v~~~d~~~~~~~g~~~~~~~~~i~~~Le~lGL~~~~~~~~ 897 (986)
T 2iw3_A 818 ECSFLLGENIGMKSERWVPMMSVDNAWIPRGELVESHSKMVAEVDMKEALASGQFRPLTRKEIEEHCSMLGLDPEIVSHS 897 (986)
T ss_dssp EEEEEEEESTTSTTCEEEECCGGGCEEEEGGGTHHHHHHHHHHHHHHHHHHTTCCCCCCHHHHHHHHHHTTCCHHHHHHS
T ss_pred hhhhhhhhhhhcccccccccchhhhhhhhhHHHhhhHhhhhhhhhhhhhhhhcccchhHHHHHHHHHHHcCCCchhhcCC
Confidence 000 0 00013467889999999752 355
Q ss_pred cccCcccCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhccCeE
Q 007554 186 VIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRL 265 (599)
Q Consensus 186 ~vg~~~~~~LSGGerqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~p~~~i~~~~D~v 265 (599)
. +++|||||||||+|||+|+.+|++|||||||+|||+.+...+.+.|+++ |.|||++||++ +.+.++||++
T Consensus 898 ~-----~~~LSGGQkQRVaLArAL~~~P~LLLLDEPT~gLD~~s~~~L~~~L~~~---g~tVIiISHD~-e~v~~l~DrV 968 (986)
T 2iw3_A 898 R-----IRGLSGGQKVKLVLAAGTWQRPHLIVLDEPTNYLDRDSLGALSKALKEF---EGGVIIITHSA-EFTKNLTEEV 968 (986)
T ss_dssp C-----GGGCCHHHHHHHHHHHHHTTCCSEEEEECGGGTCCHHHHHHHHHHHHSC---SSEEEEECSCH-HHHTTTCCEE
T ss_pred C-----ccccCHHHHHHHHHHHHHHhCCCEEEEECCccCCCHHHHHHHHHHHHHh---CCEEEEEECCH-HHHHHhCCEE
Confidence 4 4579999999999999999999999999999999999999999988765 57999999995 6788899999
Q ss_pred EEEeCCeEEEecC
Q 007554 266 YLLSGGKTVYFGE 278 (599)
Q Consensus 266 ~~L~~G~iv~~G~ 278 (599)
++|++|+++..|+
T Consensus 969 ivL~~G~Iv~~G~ 981 (986)
T 2iw3_A 969 WAVKDGRMTPSGH 981 (986)
T ss_dssp ECCBTTBCCC---
T ss_pred EEEECCEEEEeCC
Confidence 9999999987764
No 57
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=100.00 E-value=8.7e-33 Score=315.85 Aligned_cols=196 Identities=26% Similarity=0.320 Sum_probs=148.6
Q ss_pred ccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHH----------------------cCCCCCCCceeEEEECCEeCCC
Q 007554 68 THNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALS----------------------SRLASNAFLSGTILLNGHKTKL 125 (599)
Q Consensus 68 ~~~iL~~vs~~i~~Ge~~aI~G~sGsGKSTLl~~L~----------------------G~~~~~~~~~G~I~~~g~~~~~ 125 (599)
.+.+|+|||++|++||++||+||||||||||+++|. |+..+ .|.|.++|.+...
T Consensus 334 ~~~~L~~vsl~I~~Ge~vaIiGpnGsGKSTLl~~i~~~~~~~~~~~~~~~~g~~~~i~gl~~~----~~~i~~~~~~~~~ 409 (670)
T 3ux8_A 334 REHNLKNVSVKIPLGTFVAVTGVSGSGKSTLVNEVLYKALAQKLHRAKAKPGEHRDIRGLEHL----DKVIDIDQSPIGR 409 (670)
T ss_dssp CSTTCCSEEEEEETTSEEEEECSTTSSHHHHHTTTHHHHHHHHHHCCCSCCCSCSEEECGGGC----SEEEECCSSCSCS
T ss_pred cccccccceeEecCCCEEEEEeeCCCCHHHHHHHHHHHHHHHHhhhccccccccccccccccc----CceeEeccccCCC
Confidence 356899999999999999999999999999998764 22222 4678887765321
Q ss_pred C----------------------------------------------cCeEEEEcCCCCCCC------------------
Q 007554 126 S----------------------------------------------FGTAAYVTQDDNLIG------------------ 141 (599)
Q Consensus 126 ~----------------------------------------------~~~~~yv~Q~~~l~~------------------ 141 (599)
. ....|++.|+..+++
T Consensus 410 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 489 (670)
T 3ux8_A 410 TPRSNPATYTGVFDDIRDVFASTNEAKVRGYKKGRFSFNVKGGRCEACHGDGIIKIEMHFLPDVYVPCEVCHGKRYNRET 489 (670)
T ss_dssp STTCCHHHHHTHHHHHHHHHHTSHHHHHHTCCGGGGCTTSTTTBCTTTTTCCC------------CCCTTTTTCCBCHHH
T ss_pred CCCcchhhhhhhhHHHHHHhcccchhhhcccccccccccCCCCccccccccceEeeecccccccccccccccCcccChhh
Confidence 0 001234444333222
Q ss_pred --------------CCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCc-cccccccCcccCCCCHHHHHHHHHH
Q 007554 142 --------------TLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQD-CADTVIGNWHLRGISGGERRRVSIA 206 (599)
Q Consensus 142 --------------~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~l~L~~-~~~~~vg~~~~~~LSGGerqRv~ia 206 (599)
.+||+||+.+.... . ..+++.+.+..++|.+ ..++ .+.+|||||||||+||
T Consensus 490 ~~~~~~~~~~~~~~~ltv~e~l~~~~~~-------~--~~~~~~~~l~~~~l~~~~~~~-----~~~~LSgG~~qrv~iA 555 (670)
T 3ux8_A 490 LEVTYKGKNIAEVLDMTVEDALDFFASI-------P--KIKRKLETLYDVGLGYMKLGQ-----PATTLSGGEAQRVKLA 555 (670)
T ss_dssp HTCCBTTBCHHHHHTSBHHHHHHHTTTC-------H--HHHHHHHHHHHTTCTTSBTTC-----CGGGCCHHHHHHHHHH
T ss_pred hheeecCCCHHHHhhCCHHHHHHHHHHh-------h--hHHHHHHHHHHcCCchhhccC-----CchhCCHHHHHHHHHH
Confidence 47999999875321 1 2244567788899864 2344 4567999999999999
Q ss_pred HHHhhCC---CEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhccCeEEEE------eCCeEEEec
Q 007554 207 LEILMRP---RLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLL------SGGKTVYFG 277 (599)
Q Consensus 207 ~aL~~~p---~illlDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~p~~~i~~~~D~v~~L------~~G~iv~~G 277 (599)
|||+.+| ++|||||||+|||+.++..+++.|++++++|+|||+++||+ .. ...||+|++| ++|++++.|
T Consensus 556 raL~~~p~~p~llllDEPt~~LD~~~~~~i~~~l~~l~~~g~tvi~vtHd~-~~-~~~~d~i~~l~~~~g~~~G~i~~~g 633 (670)
T 3ux8_A 556 AELHRRSNGRTLYILDEPTTGLHVDDIARLLDVLHRLVDNGDTVLVIEHNL-DV-IKTADYIIDLGPEGGDRGGQIVAVG 633 (670)
T ss_dssp HHHHSCCCSCEEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCH-HH-HTTCSEEEEEESSSGGGCCEEEEEE
T ss_pred HHHhhCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCH-HH-HHhCCEEEEecCCcCCCCCEEEEec
Confidence 9999887 59999999999999999999999999988899999999996 44 4779999999 899999999
Q ss_pred ChhhHH
Q 007554 278 ETSAAF 283 (599)
Q Consensus 278 ~~~~~~ 283 (599)
+++++.
T Consensus 634 ~~~~~~ 639 (670)
T 3ux8_A 634 TPEEVA 639 (670)
T ss_dssp CHHHHH
T ss_pred CHHHHH
Confidence 998764
No 58
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=99.97 E-value=4.9e-32 Score=304.09 Aligned_cols=204 Identities=25% Similarity=0.288 Sum_probs=151.6
Q ss_pred EEEEeEEEEE----EccCCcccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEE----------
Q 007554 52 LTWKDLTVMV----TLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTIL---------- 117 (599)
Q Consensus 52 l~~~~ls~~~----~~~~~~~~~iL~~vs~~i~~Ge~~aI~G~sGsGKSTLl~~L~G~~~~~~~~~G~I~---------- 117 (599)
|++.||...+ ..+++.....|++++ .+++||+++|+||||||||||||+|+|+++|+ +|+|.
T Consensus 70 i~i~nl~~~~~~~~~~~Y~~~~~~l~~l~-~~~~Gei~~LvGpNGaGKSTLLkiL~Gll~P~---~G~i~~~~~~~~~~~ 145 (608)
T 3j16_B 70 IQIINLPTNLEAHVTHRYSANSFKLHRLP-TPRPGQVLGLVGTNGIGKSTALKILAGKQKPN---LGRFDDPPEWQEIIK 145 (608)
T ss_dssp EEEEEESSSSSTTEEEECSTTSCEEECCC-CCCTTSEEEEECCTTSSHHHHHHHHHTSSCCC---TTTTCCSSCHHHHHH
T ss_pred eEEecCChhhcCCeEEEECCCceeecCCC-CCCCCCEEEEECCCCChHHHHHHHHhcCCCCC---CceEecccchhhhhh
Confidence 6666664221 111233445788877 68999999999999999999999999999986 78872
Q ss_pred -ECCEeCCC-----CcC--eEEEEcCCCCC------CCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccc
Q 007554 118 -LNGHKTKL-----SFG--TAAYVTQDDNL------IGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCA 183 (599)
Q Consensus 118 -~~g~~~~~-----~~~--~~~yv~Q~~~l------~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~l~L~~~~ 183 (599)
+.|..... ..+ ...+.+|.... -+..++.+++.... . +..++++++++.+||.+..
T Consensus 146 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~~~------~----~~~~~~~~~l~~~gl~~~~ 215 (608)
T 3j16_B 146 YFRGSELQNYFTKMLEDDIKAIIKPQYVDNIPRAIKGPVQKVGELLKLRM------E----KSPEDVKRYIKILQLENVL 215 (608)
T ss_dssp HTTTSTHHHHHHHHHHTSCCCEEECCCTTTHHHHCSSSSSHHHHHHHHHC------C----SCHHHHHHHHHHHTCTGGG
T ss_pred eecChhhhhhhhHHHHHhhhhhhchhhhhhhhhhhcchhhHHHHHHhhhh------h----hHHHHHHHHHHHcCCcchh
Confidence 33322100 001 12234443211 11235666554321 0 1125678899999999888
Q ss_pred cccccCcccCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhccC
Q 007554 184 DTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFD 263 (599)
Q Consensus 184 ~~~vg~~~~~~LSGGerqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~p~~~i~~~~D 263 (599)
|+.+ .+|||||||||+||+||+.+|++|||||||+|||+.++..+.+.|++++++|+|||+++|++ +++..++|
T Consensus 216 ~~~~-----~~LSgGe~Qrv~iAraL~~~p~llllDEPts~LD~~~~~~l~~~l~~l~~~g~tvi~vtHdl-~~~~~~~d 289 (608)
T 3j16_B 216 KRDI-----EKLSGGELQRFAIGMSCVQEADVYMFDEPSSYLDVKQRLNAAQIIRSLLAPTKYVICVEHDL-SVLDYLSD 289 (608)
T ss_dssp GSCT-----TTCCHHHHHHHHHHHHHHSCCSEEEEECTTTTCCHHHHHHHHHHHHGGGTTTCEEEEECSCH-HHHHHHCS
T ss_pred CCCh-----HHCCHHHHHHHHHHHHHHhCCCEEEEECcccCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCH-HHHHHhCC
Confidence 8755 56999999999999999999999999999999999999999999999988899999999995 68899999
Q ss_pred eEEEEeCCeEEE
Q 007554 264 RLYLLSGGKTVY 275 (599)
Q Consensus 264 ~v~~L~~G~iv~ 275 (599)
+|++|++|..++
T Consensus 290 rv~vl~~~~~~~ 301 (608)
T 3j16_B 290 FVCIIYGVPSVY 301 (608)
T ss_dssp EEEEEESCTTTE
T ss_pred EEEEEeCCcccc
Confidence 999999876544
No 59
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=99.97 E-value=1.2e-31 Score=297.56 Aligned_cols=179 Identities=21% Similarity=0.264 Sum_probs=141.3
Q ss_pred eeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEE-----------EECCEeCC-------CCcCeEEE
Q 007554 71 VLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTI-----------LLNGHKTK-------LSFGTAAY 132 (599)
Q Consensus 71 iL~~vs~~i~~Ge~~aI~G~sGsGKSTLl~~L~G~~~~~~~~~G~I-----------~~~g~~~~-------~~~~~~~y 132 (599)
-|.++. ..++||++||+||||||||||+|+|+|+++|+ +|+| .++|.+.. .....+..
T Consensus 15 ~l~~l~-~~~~Gei~gLiGpNGaGKSTLlkiL~Gl~~p~---~G~i~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~~~ 90 (538)
T 3ozx_A 15 KLFGLP-TPKNNTILGVLGKNGVGKTTVLKILAGEIIPN---FGDPNSKVGKDEVLKRFRGKEIYNYFKELYSNELKIVH 90 (538)
T ss_dssp EEECCC-CCCTTEEEEEECCTTSSHHHHHHHHTTSSCCC---TTCTTSCCCHHHHHHHHTTSTTHHHHHHHHTTCCCEEE
T ss_pred eecCCC-CCCCCCEEEEECCCCCcHHHHHHHHhcCCCCC---CCccccccchhhHHhhcCCeeHHHHHHHHhhcccchhh
Confidence 344444 25699999999999999999999999999986 8988 56665421 01122344
Q ss_pred EcCC----CCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHHHHHHHH
Q 007554 133 VTQD----DNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALE 208 (599)
Q Consensus 133 v~Q~----~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSGGerqRv~ia~a 208 (599)
+.|. +.++. .||+|++.... .+++++++++.+|+.+..|+.+ +.|||||||||+||+|
T Consensus 91 ~~~~~~~~~~~~~-~~v~~~l~~~~------------~~~~~~~~l~~l~l~~~~~~~~-----~~LSgGe~Qrv~iA~a 152 (538)
T 3ozx_A 91 KIQYVEYASKFLK-GTVNEILTKID------------ERGKKDEVKELLNMTNLWNKDA-----NILSGGGLQRLLVAAS 152 (538)
T ss_dssp ECSCTTGGGTTCC-SBHHHHHHHHC------------CSSCHHHHHHHTTCGGGTTSBG-----GGCCHHHHHHHHHHHH
T ss_pred ccchhhhhhhhcc-CcHHHHhhcch------------hHHHHHHHHHHcCCchhhcCCh-----hhCCHHHHHHHHHHHH
Confidence 4444 23333 38888764220 0134678899999998888765 4699999999999999
Q ss_pred HhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhccCeEEEEeCCeE
Q 007554 209 ILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKT 273 (599)
Q Consensus 209 L~~~p~illlDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~p~~~i~~~~D~v~~L~~G~i 273 (599)
|+.+|++|||||||++||+.++..+.+.|+++++ |+|||+++|++ .++..+||+|++|++|..
T Consensus 153 L~~~p~illlDEPts~LD~~~~~~l~~~l~~l~~-g~tii~vsHdl-~~~~~~~d~i~vl~~~~~ 215 (538)
T 3ozx_A 153 LLREADVYIFDQPSSYLDVRERMNMAKAIRELLK-NKYVIVVDHDL-IVLDYLTDLIHIIYGESS 215 (538)
T ss_dssp HHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHCT-TSEEEEECSCH-HHHHHHCSEEEEEEEETT
T ss_pred HHcCCCEEEEECCcccCCHHHHHHHHHHHHHHhC-CCEEEEEEeCh-HHHHhhCCEEEEecCCcc
Confidence 9999999999999999999999999999999976 89999999995 688999999999987543
No 60
>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}
Probab=99.97 E-value=9.8e-30 Score=295.33 Aligned_cols=200 Identities=26% Similarity=0.336 Sum_probs=152.0
Q ss_pred cceeeceEEEEeCCeEEEEECCCCCcHHHHH---------HHHHcCCCCCC---Cce------eEEEECCEeCCC-----
Q 007554 69 HNVLEGLTGYAEPGTLTALMGPSGSGKSTLL---------DALSSRLASNA---FLS------GTILLNGHKTKL----- 125 (599)
Q Consensus 69 ~~iL~~vs~~i~~Ge~~aI~G~sGsGKSTLl---------~~L~G~~~~~~---~~~------G~I~~~g~~~~~----- 125 (599)
+..|+|||+++++|++++|+|+||||||||+ +.+.+...+.. ..+ +.|.+++.+...
T Consensus 597 ~~~Lk~Vsl~I~~Geiv~I~G~SGSGKSTLl~~~l~~~l~~~l~~~~~~~g~~~~~~G~~~i~~~i~idq~pig~~~rs~ 676 (916)
T 3pih_A 597 HNNLKNIDVEIPLGVFVCVTGVSGSGKSSLVMETLYPALMNLLHKTKLPAGEFDSIEGHENIDKMIAIDQSPIGRTPRSN 676 (916)
T ss_dssp STTCCSEEEEEESSSEEEEECSTTSSHHHHHHHTHHHHHHHHHHCCCCCCCCCSEEECGGGCCEEEEECSCCCCCCTTCC
T ss_pred cccccccceEEcCCcEEEEEccCCCChhhhHHHHHHHHHHHHhccccccccccccccccccccceEeecccccccccccc
Confidence 4579999999999999999999999999997 44444332210 012 335555433210
Q ss_pred -----------------------------------------CcCeEEEEcCCCCCCC-----------------------
Q 007554 126 -----------------------------------------SFGTAAYVTQDDNLIG----------------------- 141 (599)
Q Consensus 126 -----------------------------------------~~~~~~yv~Q~~~l~~----------------------- 141 (599)
..+..|++.|+..+++
T Consensus 677 ~at~~~~~~~ir~lfa~~~~a~~~g~~~~~fs~n~~~grc~~c~g~G~i~~e~~flp~~~v~c~~c~g~r~~~e~l~i~~ 756 (916)
T 3pih_A 677 PATYTKVFDEIRSLFAMTPAAKARGYNKSRFSFNLKGGRCEACQGQGYVKIEMLFLPDVYVECDVCKGKRYNRETLEITY 756 (916)
T ss_dssp HHHHSSHHHHHHHHHTTSHHHHHSSCCGGGGCTTSTTTBCTTTTTSSEEEECCTTSCCEEEECTTTTTSCBCTTGGGCCB
T ss_pred ccchhhhHHHHHHHhccchHHHhcccccccccccccccccccccCcceEEEeeeccCcceeecccccccccchhhhhhhh
Confidence 0012467777766655
Q ss_pred ---------CCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHHHHHHHHHhhC
Q 007554 142 ---------TLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMR 212 (599)
Q Consensus 142 ---------~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSGGerqRv~ia~aL~~~ 212 (599)
.+||.|++.|.... ....++.++|+.+||.... ++ ..+.+|||||||||+|||+|+++
T Consensus 757 ~g~~i~~vl~~tv~eal~f~~~~---------~~~~~~~~~L~~vGL~~~~---lg-q~~~~LSGGErQRV~LAraL~~~ 823 (916)
T 3pih_A 757 KGKNISDILDMTVDEALEFFKNI---------PSIKRTLQVLHDVGLGYVK---LG-QPATTLSGGEAQRIKLASELRKR 823 (916)
T ss_dssp TTBCHHHHHSSBHHHHHHHTTTC---------HHHHHHHHHHHHTTGGGSB---TT-CCSTTCCHHHHHHHHHHHHHTSC
T ss_pred ccCCHHHHhhCCHHHHHHHHhcc---------hhHHHHHHHHHHcCCchhh---cc-CCccCCCHHHHHHHHHHHHHhhC
Confidence 36788888875321 1234577899999996532 22 24567999999999999999987
Q ss_pred C---CEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhccCeEEEE------eCCeEEEecChhhHH
Q 007554 213 P---RLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLL------SGGKTVYFGETSAAF 283 (599)
Q Consensus 213 p---~illlDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~p~~~i~~~~D~v~~L------~~G~iv~~G~~~~~~ 283 (599)
| +||||||||+|||+.+...+++.|++++++|.|||+++|++ +. .+.||+|++| ++|++++.|+++++.
T Consensus 824 p~~p~LLILDEPTsGLD~~~~~~L~~lL~~L~~~G~TVIvI~HdL-~~-i~~ADrIivLgp~gg~~~G~Iv~~Gtpeel~ 901 (916)
T 3pih_A 824 DTGRTLYILDEPTVGLHFEDVRKLVEVLHRLVDRGNTVIVIEHNL-DV-IKNADHIIDLGPEGGKEGGYIVATGTPEEIA 901 (916)
T ss_dssp CCSSEEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCH-HH-HTTCSEEEEEESSSGGGCCEEEEEESHHHHH
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HH-HHhCCEEEEecCCCCCCCCEEEEEcCHHHHH
Confidence 5 79999999999999999999999999988899999999996 44 4669999999 899999999999875
No 61
>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A
Probab=99.97 E-value=1.9e-30 Score=299.41 Aligned_cols=208 Identities=26% Similarity=0.315 Sum_probs=157.6
Q ss_pred eeEEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHH-cCC---------CCCC--Ccee---
Q 007554 50 ARLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALS-SRL---------ASNA--FLSG--- 114 (599)
Q Consensus 50 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~G~sGsGKSTLl~~L~-G~~---------~~~~--~~~G--- 114 (599)
..|+++|++ ...|+|||++|++||+++|+|+||||||||+++|. |.+ .++. ...|
T Consensus 628 ~~L~v~~l~----------~~~Lk~Vsl~I~~Geiv~I~G~nGSGKSTLl~~ll~g~l~~~l~~~~~~~G~~~~i~G~~~ 697 (972)
T 2r6f_A 628 RWLEVVGAR----------EHNLKNVSVKIPLGTFVAVTGVSGSGKSTLVNEVLYKALAQKLHRAKAKPGEHRDIRGLEH 697 (972)
T ss_dssp CEEEEEEEC----------SSSCCSEEEEEESSSEEECCBCTTSSHHHHHTTTHHHHHHHHHHCCCCCCCSCSEEECGGG
T ss_pred eEEEEecCc----------ccccccceEEEcCCCEEEEEcCCCCCHHHHHHHHHHHHHHHhhcCCCCCCCceeeeccccc
Confidence 357777764 23699999999999999999999999999999854 211 1211 1234
Q ss_pred ---EEEECCEeCCCC------------------------cCeEEEEcCCCCCC----------------------C----
Q 007554 115 ---TILLNGHKTKLS------------------------FGTAAYVTQDDNLI----------------------G---- 141 (599)
Q Consensus 115 ---~I~~~g~~~~~~------------------------~~~~~yv~Q~~~l~----------------------~---- 141 (599)
.|.++|.++... .+..||++|...+. +
T Consensus 698 ~~~~I~idq~pig~~~rs~paty~~v~d~ir~lfa~~~ear~~Gy~~~~fsfn~~ggrC~~C~g~G~i~~em~fl~~v~~ 777 (972)
T 2r6f_A 698 LDKVIDIDQSPIGRTPRSNPATYTGVFDDIRDVFASTNEAKVRGYKKGRFSFNVKGGRCEACHGDGIIKIEMHFLPDVYV 777 (972)
T ss_dssp CSEEEEECSSCSCSSTTCCHHHHHTHHHHHHHHHHTSHHHHHTTCCTTTTCTTSTTTBCTTTTTCSEEEECCSSSCCEEE
T ss_pred cceEEEEcCcccccCccccchhhhhHHHHHHHHhccCHHHHHhcccccccccccccccccccccccceeeehhccccccc
Confidence 588888764210 02246666643221 1
Q ss_pred ----------------------------CCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCc-cccccccCccc
Q 007554 142 ----------------------------TLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQD-CADTVIGNWHL 192 (599)
Q Consensus 142 ----------------------------~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~l~L~~-~~~~~vg~~~~ 192 (599)
.+||.|++.|.... . ...++.++++.+||.. ..+.. +
T Consensus 778 ~ce~c~G~r~~~e~l~v~~~g~sI~dvl~ltv~e~l~~~~~~-------~--~~~~~~~~L~~~gL~~~~l~~~-----~ 843 (972)
T 2r6f_A 778 PCEVCHGKRYNRETLEVTYKGKNIAEVLDMTVEDALDFFASI-------P--KIKRKLETLYDVGLGYMKLGQP-----A 843 (972)
T ss_dssp ECTTTTTCCBCTTGGGCCBTTBCHHHHHTSBHHHHHHHTCSC-------H--HHHHHHHHHHHTTCSSSBTTCC-----G
T ss_pred cccccccccccchhhhhhccCCCHHHhhhcCHHHHHHHHhcc-------h--hHHHHHHHHHHcCCCcccccCc-----h
Confidence 35788888764211 1 1234567899999986 45554 4
Q ss_pred CCCCHHHHHHHHHHHHHhhCC---CEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhccCeEEEE-
Q 007554 193 RGISGGERRRVSIALEILMRP---RLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLL- 268 (599)
Q Consensus 193 ~~LSGGerqRv~ia~aL~~~p---~illlDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~p~~~i~~~~D~v~~L- 268 (599)
..|||||||||+||++|+.+| +||||||||+|||+.++..+++.|++++++|.|||+++|++ +.+ +.||+|++|
T Consensus 844 ~~LSGGekQRv~LAraL~~~p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~~G~TVIvisHdl-~~i-~~aDrIivL~ 921 (972)
T 2r6f_A 844 TTLSGGEAQRVKLAAELHRRSNGRTLYILDEPTTGLHVDDIARLLDVLHRLVDNGDTVLVIEHNL-DVI-KTADYIIDLG 921 (972)
T ss_dssp GGCCHHHHHHHHHHHHHSSCCCSCEEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCH-HHH-TTCSEEEEEC
T ss_pred hhCCHHHHHHHHHHHHHhcCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEcCCH-HHH-HhCCEEEEEc
Confidence 579999999999999999865 99999999999999999999999999988899999999995 444 789999999
Q ss_pred -----eCCeEEEecChhhHH
Q 007554 269 -----SGGKTVYFGETSAAF 283 (599)
Q Consensus 269 -----~~G~iv~~G~~~~~~ 283 (599)
++|++++.|+++++.
T Consensus 922 p~gG~~~G~Iv~~g~~~el~ 941 (972)
T 2r6f_A 922 PEGGDRGGQIVAVGTPEEVA 941 (972)
T ss_dssp SSSTTSCCSEEEEESHHHHH
T ss_pred CCCCCCCCEEEEecCHHHHH
Confidence 789999999998764
No 62
>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*
Probab=99.97 E-value=4.4e-30 Score=295.93 Aligned_cols=208 Identities=29% Similarity=0.330 Sum_probs=155.9
Q ss_pred eeEEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCCcHHHHHHH-HHcCCC-------C--C----------
Q 007554 50 ARLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDA-LSSRLA-------S--N---------- 109 (599)
Q Consensus 50 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~G~sGsGKSTLl~~-L~G~~~-------~--~---------- 109 (599)
..|+++|+++ ..|+|||++|++||++||+|+||||||||++. |+|.+. + +
T Consensus 501 ~~L~v~~l~~----------~~L~~vsl~i~~Geiv~I~G~nGSGKSTLl~~~L~g~l~~~~g~~~~~~g~~~~~~~~~~ 570 (842)
T 2vf7_A 501 GWLELNGVTR----------NNLDNLDVRFPLGVMTSVTGVSGSGKSTLVSQALVDALAAHFGQPVNPDPEDDEDPADHT 570 (842)
T ss_dssp CEEEEEEEEE----------TTEEEEEEEEESSSEEEEECCTTSSHHHHCCCCCHHHHHHHTTC----------------
T ss_pred ceEEEEeeee----------cccccceEEEcCCCEEEEEcCCCcCHHHHHHHHHHHHHHHHhcCCCCccccccccccccc
Confidence 4588888864 26999999999999999999999999999996 765431 1 0
Q ss_pred ---CCcee-------EEEECCEeCCCCcC----------------------------------------------eEEEE
Q 007554 110 ---AFLSG-------TILLNGHKTKLSFG----------------------------------------------TAAYV 133 (599)
Q Consensus 110 ---~~~~G-------~I~~~g~~~~~~~~----------------------------------------------~~~yv 133 (599)
...+| .|.++|.++....+ ..|++
T Consensus 571 ~~~~~~~G~~~~~~~~i~vdq~~i~~~~rs~~at~~~~~~~ir~~fa~~~~~r~~g~~~~~fs~n~~~g~c~~c~g~G~~ 650 (842)
T 2vf7_A 571 AGSARLGGDLAQITRLVRVDQKPIGRTPRSNMATYTGLFDQVRKLFAATPLAKKRGYNAGRFSFNVKGGRCEHCQGEGWV 650 (842)
T ss_dssp -CCCEEEESGGGCCEEEEECSSCSCSSTTCCHHHHSSTHHHHHHHHHTSHHHHHTTCCGGGGCSSSTTTBCTTTTTCSEE
T ss_pred cccccccCcccccceEEEECCeeCCCCccccchhhhhHHHHHHHHHhcChHHHhcCCccccccccccccccccccCCCcc
Confidence 11367 78899876421100 01222
Q ss_pred cCCCCCCC------------------------C--------CCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCc
Q 007554 134 TQDDNLIG------------------------T--------LTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQD 181 (599)
Q Consensus 134 ~Q~~~l~~------------------------~--------lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~l~L~~ 181 (599)
..+..+++ . +|++|++.|... ....+++.++++.+||..
T Consensus 651 ~~~~~f~~~v~~~c~~c~G~r~~~e~l~v~~~~~si~e~l~ltv~e~l~~~~~---------~~~~~~~~~~L~~~gL~~ 721 (842)
T 2vf7_A 651 MVELLFLPSVYAPCPVCHGTRYNAETLEVEYRGKNIADVLALTVDEAHDFFAD---------ESAIFRALDTLREVGLGY 721 (842)
T ss_dssp EETTCSSSCEEEECTTTTTCCBCTTGGGCCBTTBCHHHHHTCBHHHHHHHTTT---------SHHHHHHHHHHHHTTCTT
T ss_pred chhhhcCCccceecccccCcccchhhHhhhhcCCCHHHHHhccHHHHHHHhhc---------chHHHHHHHHHHHcCCCc
Confidence 11111222 2 345555444211 112346788999999976
Q ss_pred c-ccccccCcccCCCCHHHHHHHHHHHHHhhC---CCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchH
Q 007554 182 C-ADTVIGNWHLRGISGGERRRVSIALEILMR---PRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSE 257 (599)
Q Consensus 182 ~-~~~~vg~~~~~~LSGGerqRv~ia~aL~~~---p~illlDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~p~~~ 257 (599)
. .++ .+..|||||||||+||++|+.+ |+||||||||+|||+.+...+.+.|++++++|.|||+++|++ +.
T Consensus 722 ~~l~~-----~~~~LSGGekQRv~LAraL~~~p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~~G~tVIvisHdl-~~ 795 (842)
T 2vf7_A 722 LRLGQ-----PATELSGGEAQRIKLATELRRSGRGGTVYVLDEPTTGLHPADVERLQRQLVKLVDAGNTVIAVEHKM-QV 795 (842)
T ss_dssp SBTTC-----CGGGCCHHHHHHHHHHHTTSSCCSSCEEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCH-HH
T ss_pred ccccC-----CcccCCHHHHHHHHHHHHHHhCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEcCCH-HH
Confidence 3 344 3457999999999999999996 799999999999999999999999999998899999999995 56
Q ss_pred HHhccCeEEEE------eCCeEEEecChhhHH
Q 007554 258 VFELFDRLYLL------SGGKTVYFGETSAAF 283 (599)
Q Consensus 258 i~~~~D~v~~L------~~G~iv~~G~~~~~~ 283 (599)
+ +.||+|++| ++|++++.|+++++.
T Consensus 796 i-~~aDrii~L~p~~g~~~G~Iv~~g~~~el~ 826 (842)
T 2vf7_A 796 V-AASDWVLDIGPGAGEDGGRLVAQGTPAEVA 826 (842)
T ss_dssp H-TTCSEEEEECSSSGGGCCSEEEEECHHHHT
T ss_pred H-HhCCEEEEECCCCCCCCCEEEEEcCHHHHH
Confidence 6 889999999 799999999998753
No 63
>2ygr_A Uvrabc system protein A; hydrolase, nucleotide excision repair; 3.40A {Mycobacterium tuberculosis} PDB: 3zqj_A
Probab=99.96 E-value=1.3e-29 Score=293.41 Aligned_cols=209 Identities=25% Similarity=0.331 Sum_probs=154.4
Q ss_pred eeEEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHH-c----CCCCCCCcee----------
Q 007554 50 ARLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALS-S----RLASNAFLSG---------- 114 (599)
Q Consensus 50 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~G~sGsGKSTLl~~L~-G----~~~~~~~~~G---------- 114 (599)
..|+++|++ ..+|+|||++|++|++++|+|+||||||||+++|. | .+.+.....|
T Consensus 646 ~~L~v~~l~----------~~~Lk~Vsl~I~~GeivaI~G~nGSGKSTLl~~il~g~l~~~l~~~~~~~G~~~~i~G~~~ 715 (993)
T 2ygr_A 646 RQLTVVGAR----------EHNLRGIDVSFPLGVLTSVTGVSGSGKSTLVNDILAAVLANRLNGARQVPGRHTRVTGLDY 715 (993)
T ss_dssp SEEEEEEEC----------STTCCSEEEEEESSSEEEEECSTTSSHHHHHTTTHHHHHHHHTTCCCCCCCSEEEECCCTT
T ss_pred ceEEEecCc----------cccccCceEEECCCCEEEEEcCCCCCHHHHHHHHHHHHHHhhhcCCcCCCCceeeecCccc
Confidence 357777764 23699999999999999999999999999999853 2 2211100123
Q ss_pred ---EEEECCEeCCCC------------------------cCeEEEEcCCCCC----------------------CC----
Q 007554 115 ---TILLNGHKTKLS------------------------FGTAAYVTQDDNL----------------------IG---- 141 (599)
Q Consensus 115 ---~I~~~g~~~~~~------------------------~~~~~yv~Q~~~l----------------------~~---- 141 (599)
.|.+++.++... .+..||++|...+ ++
T Consensus 716 ~~~~i~idq~pig~~~rs~paty~~~~d~ir~lfa~~p~ar~~gy~~~~fsfn~~~grC~~C~g~G~~~~e~~fl~~v~~ 795 (993)
T 2ygr_A 716 LDKLVRIDQSPIGRTPRSNPATYTGVFDKIRTLFAATNEAKVRGYKPGRFSFNVKGGRCEACTGDGTIKIEMNFLPDVYV 795 (993)
T ss_dssp CSEEECCCCSCSCSSTTCCHHHHHTHHHHHHHHHHTSHHHHTTTCCTTTTCTTSTTTBCTTTTSSSEEEECCTTSCCEEE
T ss_pred cceEEEecCcccccCcccchhhhhhHHHHHHHHhccCHHHHHhcccccccccccccccccccccccceeehhhcccccee
Confidence 355555443100 0123566654221 11
Q ss_pred ----------------------------CCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCc-cccccccCccc
Q 007554 142 ----------------------------TLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQD-CADTVIGNWHL 192 (599)
Q Consensus 142 ----------------------------~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~l~L~~-~~~~~vg~~~~ 192 (599)
.+||.|++.|.... . ...++.++++.+||.. ..+. .+
T Consensus 796 ~ce~c~G~r~~~e~l~v~~~g~si~dvl~ltv~e~l~~~~~~-------~--~~~~~~~~L~~lgL~~~~l~~-----~~ 861 (993)
T 2ygr_A 796 PCEVCQGARYNRETLEVHYKGKTVSEVLDMSIEEAAEFFEPI-------A--GVHRYLRTLVDVGLGYVRLGQ-----PA 861 (993)
T ss_dssp ECTTTTTCSBCGGGGGCCBTTBCHHHHHSSBHHHHHHHSTTC-------H--HHHHHHHHHHHTTGGGSBTTC-----CG
T ss_pred eehhccccccchhhhhhhccCCCHHHHhhccHHHHHHHhhcc-------h--HHHHHHHHHHHcCCCcccccC-----cc
Confidence 35777777764321 1 1234568899999976 4455 34
Q ss_pred CCCCHHHHHHHHHHHHHhhCC---CEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhccCeEEEE-
Q 007554 193 RGISGGERRRVSIALEILMRP---RLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLL- 268 (599)
Q Consensus 193 ~~LSGGerqRv~ia~aL~~~p---~illlDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~p~~~i~~~~D~v~~L- 268 (599)
..|||||||||+||++|+.+| +||||||||+|||+.+...+++.|++++++|.|||+++|++ +.+ +.||+|++|
T Consensus 862 ~~LSGGekQRv~LAraL~~~p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~~G~TVIvisHdl-~~i-~~aDrIivL~ 939 (993)
T 2ygr_A 862 PTLSGGEAQRVKLASELQKRSTGRTVYILDEPTTGLHFDDIRKLLNVINGLVDKGNTVIVIEHNL-DVI-KTSDWIIDLG 939 (993)
T ss_dssp GGSCHHHHHHHHHHHHHSSCCCSSEEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCH-HHH-TTCSEEEEEE
T ss_pred ccCCHHHHHHHHHHHHHHhCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEcCCH-HHH-HhCCEEEEEC
Confidence 579999999999999999865 99999999999999999999999999988899999999995 444 789999999
Q ss_pred -----eCCeEEEecChhhHHH
Q 007554 269 -----SGGKTVYFGETSAAFE 284 (599)
Q Consensus 269 -----~~G~iv~~G~~~~~~~ 284 (599)
++|++++.|+++++..
T Consensus 940 p~gg~~~G~Iv~~G~~~el~~ 960 (993)
T 2ygr_A 940 PEGGAGGGTVVAQGTPEDVAA 960 (993)
T ss_dssp SSSTTSCSEEEEEECHHHHHH
T ss_pred CCcCCCCCEEEEecCHHHHHh
Confidence 6899999999987653
No 64
>4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans}
Probab=99.96 E-value=3.4e-28 Score=262.08 Aligned_cols=204 Identities=23% Similarity=0.265 Sum_probs=146.0
Q ss_pred cceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCC-----------------------------------CCce
Q 007554 69 HNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASN-----------------------------------AFLS 113 (599)
Q Consensus 69 ~~iL~~vs~~i~~Ge~~aI~G~sGsGKSTLl~~L~G~~~~~-----------------------------------~~~~ 113 (599)
..+++++++++++| +++|+|||||||||||++|+++..+. ...+
T Consensus 48 f~~l~~v~l~~~~G-~~~lvG~NGaGKStLl~aI~~l~~~~~~~~~i~~g~~~~~v~~~~~~~~~~~~~~l~r~~~~~~~ 126 (415)
T 4aby_A 48 LATITQLELELGGG-FCAFTGETGAGKSIIVDALGLLLGGRANHDLIRSGEKELLVTGFWGDGDESEADSASRRLSSAGR 126 (415)
T ss_dssp ETTEEEEEEECCSS-EEEEEESHHHHHHHHTHHHHHHTTCCCCGGGBCTTCSEEEEEEEC--------CEEEEEEETTSC
T ss_pred ccceeeEEEecCCC-cEEEECCCCCCHHHHHHHHHHHhCCCccHHHhcCCCCeEEEEEEEEecCCCceEEEEEEEecCCc
Confidence 35799999999999 99999999999999999998766421 1127
Q ss_pred eEEEECCEeCCC------CcCeEEEEcCCCCCCCCCCHHHHHHHHhhccC-----------------------CCCC---
Q 007554 114 GTILLNGHKTKL------SFGTAAYVTQDDNLIGTLTVRETISYSARLRL-----------------------PDKM--- 161 (599)
Q Consensus 114 G~I~~~g~~~~~------~~~~~~yv~Q~~~l~~~lTV~e~l~~~~~~~~-----------------------~~~~--- 161 (599)
|++.+||++... ....+++++|++.++.. +..+...|.-.... ....
T Consensus 127 ~~i~ing~~~~~~~~~~~~~~~i~~~~q~~~l~l~-~~~~~r~~ld~~~~~~~~~~~~~~~~y~~~~~~~~~l~~~~~~~ 205 (415)
T 4aby_A 127 GAARLSGEVVSVRELQEWAQGRLTIHWQHSAVSLL-SPANQRGLLDRRVTKEAQAYAAAHAAWREAVSRLERLQASESSK 205 (415)
T ss_dssp EEEEETTEEECHHHHHHHHTTTEEEETTTCTTTTS-SHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHC-------
T ss_pred eEEEECCEECCHHHHHHHHhhceEEecCccccccc-CHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHHHHHhhhhhh
Confidence 899999987532 12348999999876543 55554444211100 0000
Q ss_pred -C------------------------------HHHHHHHHHHHHHHcCCCccc----------------cc---cccC--
Q 007554 162 -P------------------------------WSEKRTLVERTIIEMGLQDCA----------------DT---VIGN-- 189 (599)
Q Consensus 162 -~------------------------------~~~~~~~v~~~l~~l~L~~~~----------------~~---~vg~-- 189 (599)
. .......+.+.++.+++.+.. +. .+..
T Consensus 206 ~~~~i~~~~~l~~~~~~l~~~~~~l~~~R~~~~~~l~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 285 (415)
T 4aby_A 206 HPTSLVPRGSVDALHAELLKVGQALDAAREREAEPLVDSLLAVIRELGMPHARMEFALSALAEPAAYGLSDVLLRFSANP 285 (415)
T ss_dssp ----CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTCTTCEEEEEEEEEEEEETTEEEEEEEEEESSS
T ss_pred cCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceEEEEEeeccCCCCCCCceEEEEEEcCC
Confidence 0 001123344556666654310 00 1110
Q ss_pred ----cccCC-CCHHHHHHHHHHHHHhhCC--CEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhcc
Q 007554 190 ----WHLRG-ISGGERRRVSIALEILMRP--RLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELF 262 (599)
Q Consensus 190 ----~~~~~-LSGGerqRv~ia~aL~~~p--~illlDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~p~~~i~~~~ 262 (599)
..++. ||||||||++||++|+.+| ++|||||||+|||+.++..+.+.|++++ +|.|||++||++ ++...|
T Consensus 286 ~~~~~~~~~~lSgGe~qrl~lA~~l~~~~~~~~LlLDEpt~~LD~~~~~~l~~~L~~l~-~~~~vi~itH~~--~~~~~~ 362 (415)
T 4aby_A 286 GEELGPLSDVASGGELSRVMLAVSTVLGADTPSVVFDEVDAGIGGAAAIAVAEQLSRLA-DTRQVLVVTHLA--QIAARA 362 (415)
T ss_dssp SCCCCBGGGCSCHHHHHHHHHHHHHHHCCSSSEEEESSTTTTCCHHHHHHHHHHHHHHT-TTSEEEEECSCH--HHHTTC
T ss_pred CCcccchhhhcCHhHHHHHHHHHHHHhCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHh-CCCEEEEEeCcH--HHHhhc
Confidence 11122 6999999999999999999 9999999999999999999999999997 589999999996 456889
Q ss_pred CeEEEE----eCCeEEEec
Q 007554 263 DRLYLL----SGGKTVYFG 277 (599)
Q Consensus 263 D~v~~L----~~G~iv~~G 277 (599)
|++++| ++|+++...
T Consensus 363 d~i~~l~k~~~~G~~~~~~ 381 (415)
T 4aby_A 363 HHHYKVEKQVEDGRTVSHV 381 (415)
T ss_dssp SEEEEEEEEEETTEEEEEE
T ss_pred CeEEEEEEeccCCceEEEE
Confidence 999999 999987653
No 65
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=99.95 E-value=2.3e-31 Score=289.84 Aligned_cols=186 Identities=11% Similarity=0.087 Sum_probs=147.5
Q ss_pred eeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCcee-E-EEECCEeCCCCcCeEEEEcCCCC---CCCCCCHH
Q 007554 72 LEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSG-T-ILLNGHKTKLSFGTAAYVTQDDN---LIGTLTVR 146 (599)
Q Consensus 72 L~~vs~~i~~Ge~~aI~G~sGsGKSTLl~~L~G~~~~~~~~~G-~-I~~~g~~~~~~~~~~~yv~Q~~~---l~~~lTV~ 146 (599)
+.++|+++++|++++|+||||||||||+|+|+|+..+. +| + |.+||.. .+.++|+||+.. +.+.+||+
T Consensus 128 y~~vsl~i~~Ge~v~IvGpnGsGKSTLlr~L~Gl~~p~---~G~~pI~vdg~~----~~~i~~vpq~~~l~~~~~~~tv~ 200 (460)
T 2npi_A 128 LEKIRMSNFEGPRVVIVGGSQTGKTSLSRTLCSYALKF---NAYQPLYINLDP----QQPIFTVPGCISATPISDILDAQ 200 (460)
T ss_dssp HHHHHHHSSSCCCEEEEESTTSSHHHHHHHHHHTTHHH---HCCCCEEEECCT----TSCSSSCSSCCEEEECCSCCCTT
T ss_pred hhcCceEeCCCCEEEEECCCCCCHHHHHHHHhCccccc---CCceeEEEcCCc----cCCeeeeccchhhcccccccchh
Confidence 34788999999999999999999999999999998874 89 8 9999832 356899999984 44567999
Q ss_pred HHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHHHHHHHH--HhhCCCE----EEEeC
Q 007554 147 ETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALE--ILMRPRL----LFLDE 220 (599)
Q Consensus 147 e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSGGerqRv~ia~a--L~~~p~i----lllDE 220 (599)
||+ |+....... . ..+++.++++.+|+.+..+ +.+|||||||||+|||+ |+.+|++ |||||
T Consensus 201 eni-~~~~~~~~~--~---~~~~~~~ll~~~gl~~~~~-------~~~LSgGq~qrlalAra~rL~~~p~i~~sGLlLDE 267 (460)
T 2npi_A 201 LPT-WGQSLTSGA--T---LLHNKQPMVKNFGLERINE-------NKDLYLECISQLGQVVGQRLHLDPQVRRSGCIVDT 267 (460)
T ss_dssp CTT-CSCBCBSSC--C---SSCCBCCEECCCCSSSGGG-------CHHHHHHHHHHHHHHHHHHHHHCHHHHHSCEEEEC
T ss_pred hhh-cccccccCc--c---hHHHHHHHHHHhCCCcccc-------hhhhhHHHHHHHHHHHHHHhccCcccCcceEEEeC
Confidence 998 654321110 0 1123455677788876654 35799999999999999 9999999 99999
Q ss_pred -CCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCch-----HHHhccCe-----EEEEe-CCeEEEecChhhH
Q 007554 221 -PTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSS-----EVFELFDR-----LYLLS-GGKTVYFGETSAA 282 (599)
Q Consensus 221 -PtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~p~~-----~i~~~~D~-----v~~L~-~G~iv~~G~~~~~ 282 (599)
||++||+. ...+.+.+++ .+.|+|+++|+..+ ++.+++|+ |++|+ +|+++ .|++++.
T Consensus 268 pPts~LD~~-~~~l~~l~~~---~~~tviiVth~~~~~l~~~~~~~~~dr~~~~~vi~l~k~G~iv-~g~~~~~ 336 (460)
T 2npi_A 268 PSISQLDEN-LAELHHIIEK---LNVNIMLVLCSETDPLWEKVKKTFGPELGNNNIFFIPKLDGVS-AVDDVYK 336 (460)
T ss_dssp CCGGGSCSS-CHHHHHHHHH---TTCCEEEEECCSSCTHHHHHHHHHHHHHCGGGEEEECCCTTCC-CCCHHHH
T ss_pred CcccccChh-HHHHHHHHHH---hCCCEEEEEccCchhhhHHHHHHhcccccCCEEEEEeCCCcEE-ECCHHHH
Confidence 99999999 5555555444 37899999999641 56689999 99999 99999 9988765
No 66
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=99.92 E-value=6.6e-25 Score=232.92 Aligned_cols=83 Identities=34% Similarity=0.479 Sum_probs=76.7
Q ss_pred ccCCCCHHHHHHHHHHHHHh------hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhccCe
Q 007554 191 HLRGISGGERRRVSIALEIL------MRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDR 264 (599)
Q Consensus 191 ~~~~LSGGerqRv~ia~aL~------~~p~illlDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~p~~~i~~~~D~ 264 (599)
.+.+|||||||||+||++|+ .+|++|||||||+|||+.++..+++.|++++++|+|||+++|++ + ..+.+|+
T Consensus 276 ~~~~LSgGe~qr~~la~al~~~~~~~~~p~~lllDEpt~~LD~~~~~~~~~~l~~l~~~g~tvi~itH~~-~-~~~~~d~ 353 (365)
T 3qf7_A 276 PARGLSGGERALISISLAMSLAEVASGRLDAFFIDEGFSSLDTENKEKIASVLKELERLNKVIVFITHDR-E-FSEAFDR 353 (365)
T ss_dssp EGGGSCHHHHHHHHHHHHHHHHHHTTTTCCEEEEESCCTTSCHHHHHHHHHHHHGGGGSSSEEEEEESCH-H-HHTTCSC
T ss_pred CchhCCHHHHHHHHHHHHHHhhhcccCCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEecch-H-HHHhCCE
Confidence 56789999999999999999 79999999999999999999999999999988899999999996 3 4788999
Q ss_pred EEEEeCCeEEE
Q 007554 265 LYLLSGGKTVY 275 (599)
Q Consensus 265 v~~L~~G~iv~ 275 (599)
+++|++|+++.
T Consensus 354 ~~~l~~G~i~~ 364 (365)
T 3qf7_A 354 KLRITGGVVVN 364 (365)
T ss_dssp EEEEETTEEC-
T ss_pred EEEEECCEEEe
Confidence 99999999874
No 67
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=99.92 E-value=1e-28 Score=241.90 Aligned_cols=141 Identities=18% Similarity=0.186 Sum_probs=100.2
Q ss_pred ccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCE--eCCCCcCeEEEEcCCCCCCCCCCH
Q 007554 68 THNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGH--KTKLSFGTAAYVTQDDNLIGTLTV 145 (599)
Q Consensus 68 ~~~iL~~vs~~i~~Ge~~aI~G~sGsGKSTLl~~L~G~~~~~~~~~G~I~~~g~--~~~~~~~~~~yv~Q~~~l~~~lTV 145 (599)
++.+|+|+ ++||+++|+||||||||||+++|+|+ +|+ +|+|..... +.....+.++||+|++
T Consensus 12 ~~~~l~~i----~~Ge~~~liG~nGsGKSTLl~~l~Gl-~p~---~G~I~~~~~~~~~~~~~~~ig~v~q~~-------- 75 (208)
T 3b85_A 12 QKHYVDAI----DTNTIVFGLGPAGSGKTYLAMAKAVQ-ALQ---SKQVSRIILTRPAVEAGEKLGFLPGTL-------- 75 (208)
T ss_dssp HHHHHHHH----HHCSEEEEECCTTSSTTHHHHHHHHH-HHH---TTSCSEEEEEECSCCTTCCCCSSCC----------
T ss_pred HHHHHHhc----cCCCEEEEECCCCCCHHHHHHHHhcC-CCc---CCeeeeEEecCCchhhhcceEEecCCH--------
Confidence 46789996 89999999999999999999999999 774 788742111 1112235699999975
Q ss_pred HHHH-HHHh----hccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHHHHHHHHHhhCCCEEEEeC
Q 007554 146 RETI-SYSA----RLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDE 220 (599)
Q Consensus 146 ~e~l-~~~~----~~~~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSGGerqRv~ia~aL~~~p~illlDE 220 (599)
+||+ .+.. .+.. ... .++++++++. + + |||||++|||+|+.+|++|||||
T Consensus 76 ~enl~~~~~~~~~~~~~--~~~----~~~~~~~l~~-g----------------l--Gq~qrv~lAraL~~~p~lllLDE 130 (208)
T 3b85_A 76 NEKIDPYLRPLHDALRD--MVE----PEVIPKLMEA-G----------------I--VEVAPLAYMRGRTLNDAFVILDE 130 (208)
T ss_dssp ----CTTTHHHHHHHTT--TSC----TTHHHHHHHT-T----------------S--EEEEEGGGGTTCCBCSEEEEECS
T ss_pred HHHHHHHHHHHHHHHHH--hcc----HHHHHHHHHh-C----------------C--chHHHHHHHHHHhcCCCEEEEeC
Confidence 4444 2211 1110 000 1234444433 2 2 99999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCc
Q 007554 221 PTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPS 255 (599)
Q Consensus 221 PtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~p~ 255 (599)
||+| ++..+.+.|+++ ++|+||| +|||+.
T Consensus 131 Pts~----~~~~l~~~l~~l-~~g~tii-vtHd~~ 159 (208)
T 3b85_A 131 AQNT----TPAQMKMFLTRL-GFGSKMV-VTGDIT 159 (208)
T ss_dssp GGGC----CHHHHHHHHTTB-CTTCEEE-EEEC--
T ss_pred Cccc----cHHHHHHHHHHh-cCCCEEE-EECCHH
Confidence 9999 899999999998 6789999 999963
No 68
>1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12
Probab=99.91 E-value=7.7e-25 Score=228.58 Aligned_cols=88 Identities=28% Similarity=0.258 Sum_probs=73.6
Q ss_pred ccCCCCHHHHHHHHHHHHHh----hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhccCeE-
Q 007554 191 HLRGISGGERRRVSIALEIL----MRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRL- 265 (599)
Q Consensus 191 ~~~~LSGGerqRv~ia~aL~----~~p~illlDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~p~~~i~~~~D~v- 265 (599)
.+..||||||||++||++|+ .+|++|||||||++||+..+..+.+.|++++ +|.|||++||++ ++.+.||++
T Consensus 216 ~~~~lS~Gq~q~v~ia~~l~~~~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~-~~~~vi~~tH~~--~~~~~~d~~~ 292 (322)
T 1e69_A 216 KLSLLSGGEKALVGLALLFALMEIKPSPFYVLDEVDSPLDDYNAERFKRLLKENS-KHTQFIVITHNK--IVMEAADLLH 292 (322)
T ss_dssp BGGGSCHHHHHHHHHHHHHHHTTTSCCSEEEEESCCSSCCHHHHHHHHHHHHHHT-TTSEEEEECCCT--TGGGGCSEEE
T ss_pred chhhCCHHHHHHHHHHHHHHHhccCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCeEEEEECCH--HHHhhCceEE
Confidence 35679999999999999997 5889999999999999999999999999985 578999999995 367899987
Q ss_pred -EEEeCCeE-EEecChhh
Q 007554 266 -YLLSGGKT-VYFGETSA 281 (599)
Q Consensus 266 -~~L~~G~i-v~~G~~~~ 281 (599)
++|.+|+. +.....++
T Consensus 293 ~v~~~~g~s~~~~~~~~~ 310 (322)
T 1e69_A 293 GVTMVNGVSAIVPVEVEK 310 (322)
T ss_dssp EEEESSSCEEEEECCC--
T ss_pred EEEEeCCEEEEEEEEcch
Confidence 77887754 44444444
No 69
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=99.91 E-value=1.2e-29 Score=261.55 Aligned_cols=200 Identities=16% Similarity=0.165 Sum_probs=146.9
Q ss_pred hhhhhhhhHHHhhhcCCCCCccccCCCCCchhhHHhhhhccccCCCcceeEEEEeEEEEEEccCCcccceeeceEEEEeC
Q 007554 2 RDSAASNVIMEIEASKPAGNSIVVGGLSPLSETIWKEKINTEFSGDVSARLTWKDLTVMVTLSNGETHNVLEGLTGYAEP 81 (599)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~ 81 (599)
++.+|++|+.++++.++.... .. .+ |.+. ...|+++||++.+ . +.+|+++|+++++
T Consensus 70 ~a~~a~~ri~~~l~~~~~~~~--~~--~~-----~~~~---------~~~i~~~~vs~~y-----~-~~vL~~vsl~i~~ 125 (305)
T 2v9p_A 70 RAETQALSMPAYIKARCKLAT--GE--GS-----WKSI---------LTFFNYQNIELIT-----F-INALKLWLKGIPK 125 (305)
T ss_dssp HHHHHHSCHHHHHHHHHHHCC--SS--CC-----THHH---------HHHHHHTTCCHHH-----H-HHHHHHHHHTCTT
T ss_pred HHHHHHHHHHHHHhccccccC--CC--Cc-----cccc---------CCeEEEEEEEEEc-----C-hhhhccceEEecC
Confidence 578899999999986543211 00 00 1100 1126677787766 2 5699999999999
Q ss_pred CeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCcCeEEEEcCCCCCCCCCCHHH-HHHHHhhccCCCC
Q 007554 82 GTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLSFGTAAYVTQDDNLIGTLTVRE-TISYSARLRLPDK 160 (599)
Q Consensus 82 Ge~~aI~G~sGsGKSTLl~~L~G~~~~~~~~~G~I~~~g~~~~~~~~~~~yv~Q~~~l~~~lTV~e-~l~~~~~~~~~~~ 160 (599)
|++++|+||||||||||+++|+|++ +|+| ++|++|++.+|+. |++| |+.+...
T Consensus 126 Ge~vaIvGpsGsGKSTLl~lL~gl~------~G~I-------------~~~v~q~~~lf~~-ti~~~ni~~~~~------ 179 (305)
T 2v9p_A 126 KNCLAFIGPPNTGKSMLCNSLIHFL------GGSV-------------LSFANHKSHFWLA-SLADTRAALVDD------ 179 (305)
T ss_dssp CSEEEEECSSSSSHHHHHHHHHHHH------TCEE-------------ECGGGTTSGGGGG-GGTTCSCEEEEE------
T ss_pred CCEEEEECCCCCcHHHHHHHHhhhc------CceE-------------EEEecCccccccc-cHHHHhhccCcc------
Confidence 9999999999999999999999987 4777 3467898888875 8887 7766311
Q ss_pred CCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHH
Q 007554 161 MPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCL 240 (599)
Q Consensus 161 ~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSGGerqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~L~~l 240 (599)
.+. .+.+.++.+ |++..| +..|||||||| ||+|+++|+||| ||+||+.++..+..
T Consensus 180 ~~~-----~~~~~i~~~-L~~gld-------g~~LSgGqkQR---ARAll~~p~iLl----Ts~LD~~~~~~i~~----- 234 (305)
T 2v9p_A 180 ATH-----ACWRYFDTY-LRNALD-------GYPVSIDRKHK---AAVQIKAPPLLV----TSNIDVQAEDRYLY----- 234 (305)
T ss_dssp ECH-----HHHHHHHHT-TTGGGG-------TCCEECCCSSC---CCCEECCCCEEE----EESSCSTTCGGGGG-----
T ss_pred ccH-----HHHHHHHHH-hHccCC-------ccCcCHHHHHH---HHHHhCCCCEEE----ECCCCHHHHHHHHH-----
Confidence 111 344555554 555444 24799999999 999999999999 99999999988862
Q ss_pred HhCCCEEEEEecCCchHHHhccCeEEEEeCCeEEEecChhhHHHHHHH
Q 007554 241 SRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAFEFFAQ 288 (599)
Q Consensus 241 ~~~g~tvi~~~H~p~~~i~~~~D~v~~L~~G~iv~~G~~~~~~~~f~~ 288 (599)
.+|++. ..+.+|+| +|++|++++.|+.+++...|..
T Consensus 235 ---------ltH~~~--~~~~aD~i-vl~~G~iv~~g~~~el~~~y~~ 270 (305)
T 2v9p_A 235 ---------LHSRVQ--TFRFEQPC-TDESGEQPFNITDADWKSFFVR 270 (305)
T ss_dssp ---------GTTTEE--EEECCCCC-CCC---CCCCCCHHHHHHHHHH
T ss_pred ---------HhCCHH--HHHhCCEE-EEeCCEEEEeCCHHHHHHHHHH
Confidence 188864 46889999 9999999999999988555544
No 70
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=99.90 E-value=2.3e-25 Score=211.31 Aligned_cols=145 Identities=18% Similarity=0.230 Sum_probs=100.0
Q ss_pred ceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCcCeEEEEcCCCCC-CCCCCHHHHHHHH
Q 007554 74 GLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLSFGTAAYVTQDDNL-IGTLTVRETISYS 152 (599)
Q Consensus 74 ~vs~~i~~Ge~~aI~G~sGsGKSTLl~~L~G~~~~~~~~~G~I~~~g~~~~~~~~~~~yv~Q~~~l-~~~lTV~e~l~~~ 152 (599)
|||+++++||+++|+||||||||||+|++.+- ...+++. ...++++|++.- ...-++.+.+.
T Consensus 1 ~vsl~i~~gei~~l~G~nGsGKSTl~~~~~~~---------~~~~~~d------~~~g~~~~~~~~~~~~~~~~~~~~-- 63 (171)
T 4gp7_A 1 SMKLTIPELSLVVLIGSSGSGKSTFAKKHFKP---------TEVISSD------FCRGLMSDDENDQTVTGAAFDVLH-- 63 (171)
T ss_dssp CEEEEEESSEEEEEECCTTSCHHHHHHHHSCG---------GGEEEHH------HHHHHHCSSTTCGGGHHHHHHHHH--
T ss_pred CccccCCCCEEEEEECCCCCCHHHHHHHHccC---------CeEEccH------HHHHHhcCcccchhhHHHHHHHHH--
Confidence 68999999999999999999999999986421 1111110 012566665321 00001111111
Q ss_pred hhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHH----
Q 007554 153 ARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSA---- 228 (599)
Q Consensus 153 ~~~~~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSGGerqRv~ia~aL~~~p~illlDEPtsgLD~~---- 228 (599)
... +.....|.....|. ....|||||||++||++++.+|++|+|||||++||+.
T Consensus 64 ---------------~~~-~~~~~~g~~~~~~~------~~~~s~g~~qrv~iAral~~~p~~lllDEPt~~Ld~~~~~R 121 (171)
T 4gp7_A 64 ---------------YIV-SKRLQLGKLTVVDA------TNVQESARKPLIEMAKDYHCFPVAVVFNLPEKVCQERNKNR 121 (171)
T ss_dssp ---------------HHH-HHHHHTTCCEEEES------CCCSHHHHHHHHHHHHHTTCEEEEEEECCCHHHHHHHHHTC
T ss_pred ---------------HHH-HHHHhCCCeEEEEC------CCCCHHHHHHHHHHHHHcCCcEEEEEEeCCHHHHHHHHhcc
Confidence 111 12223454433332 1236999999999999999999999999999999999
Q ss_pred ------------HHHHHHHHHHHHHhCCCEEEEEecCCchHH
Q 007554 229 ------------AAFFVTQTLRCLSRDGRTVIASIHQPSSEV 258 (599)
Q Consensus 229 ------------~~~~i~~~L~~l~~~g~tvi~~~H~p~~~i 258 (599)
....+.+.|++++++|.|+|+++|++ +++
T Consensus 122 ~~~~~~~~vi~~~~~~l~~~l~~l~~~g~tvi~vtH~~-~~~ 162 (171)
T 4gp7_A 122 TDRQVEEYVIRKHTQQMKKSIKGLQREGFRYVYILNSP-EEV 162 (171)
T ss_dssp SSCCCCHHHHHHHHHHHHHHSTTHHHHTCSEEEEECSH-HHH
T ss_pred cCCCCCHHHHHHHHHHhhhhhhhHHhcCCcEEEEeCCH-HHh
Confidence 55889999998887799999999995 344
No 71
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=99.90 E-value=4.2e-27 Score=252.22 Aligned_cols=170 Identities=16% Similarity=0.152 Sum_probs=136.3
Q ss_pred cceeeceEEEEeCCe--------------------EEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCcC
Q 007554 69 HNVLEGLTGYAEPGT--------------------LTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLSFG 128 (599)
Q Consensus 69 ~~iL~~vs~~i~~Ge--------------------~~aI~G~sGsGKSTLl~~L~G~~~~~~~~~G~I~~~g~~~~~~~~ 128 (599)
+.+|++||+++++|+ ++||+||||||||||+|+|+|+.++. +|+|.++|.+.. +
T Consensus 36 ~~~l~~is~~i~~Ge~~~~~~~i~~~L~~~~~~~~~valvG~nGaGKSTLln~L~Gl~~p~---~GsI~~~g~~~t---~ 109 (413)
T 1tq4_A 36 QEILNLIELRMRAGNIQLTNSAISDALKEIDSSVLNVAVTGETGSGKSSFINTLRGIGNEE---EGAAKTGVVEVT---M 109 (413)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHCCEEEEEEECTTSSHHHHHHHHHTCCTTS---TTSCCCCC-------C
T ss_pred HHHhhhccceecCCCCcccchhhhhhhhhcccCCeEEEEECCCCCcHHHHHHHHhCCCCcc---CceEEECCeecc---e
Confidence 568999999999999 99999999999999999999999885 899999987542 1
Q ss_pred eEEEEcCCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHH--HHHHHHHH
Q 007554 129 TAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGG--ERRRVSIA 206 (599)
Q Consensus 129 ~~~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSGG--erqRv~ia 206 (599)
.+|++|++ .++.+|+.|++.++.. +.+++++++.+++.+. +.. +. |||| ||||+.||
T Consensus 110 -~~~v~q~~-~~~~ltv~D~~g~~~~------------~~~~~~~L~~~~L~~~-~~~-----~~-lS~G~~~kqrv~la 168 (413)
T 1tq4_A 110 -ERHPYKHP-NIPNVVFWDLPGIGST------------NFPPDTYLEKMKFYEY-DFF-----II-ISATRFKKNDIDIA 168 (413)
T ss_dssp -CCEEEECS-SCTTEEEEECCCGGGS------------SCCHHHHHHHTTGGGC-SEE-----EE-EESSCCCHHHHHHH
T ss_pred -eEEecccc-ccCCeeehHhhcccch------------HHHHHHHHHHcCCCcc-CCe-----EE-eCCCCccHHHHHHH
Confidence 27899985 5778899998765421 1236788888998765 222 22 8999 99999999
Q ss_pred HHHhh----------CCCEEEEeCCCCCCCHHHHHHHHHHHHHHH-----hC----CCEEEEEecCCch-HHHhccCeE
Q 007554 207 LEILM----------RPRLLFLDEPTSGLDSAAAFFVTQTLRCLS-----RD----GRTVIASIHQPSS-EVFELFDRL 265 (599)
Q Consensus 207 ~aL~~----------~p~illlDEPtsgLD~~~~~~i~~~L~~l~-----~~----g~tvi~~~H~p~~-~i~~~~D~v 265 (599)
++|+. +|++++|||||+|||+.++.++++.|+++. +. ..+|++++|+... .+.+++|++
T Consensus 169 ~aL~~~~~p~~lV~tkpdlllLDEPtsgLD~~~~~~l~~~l~~l~~~~l~~~g~~~~~iiliSsh~l~~~~~e~L~d~I 247 (413)
T 1tq4_A 169 KAISMMKKEFYFVRTKVDSDITNEADGEPQTFDKEKVLQDIRLNCVNTFRENGIAEPPIFLLSNKNVCHYDFPVLMDKL 247 (413)
T ss_dssp HHHHHTTCEEEEEECCHHHHHHHHHTTCCTTCCHHHHHHHHHHHHHHHHHHTTCSSCCEEECCTTCTTSTTHHHHHHHH
T ss_pred HHHHhcCCCeEEEEecCcccccCcccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCCcEEEEecCcCCccCHHHHHHHH
Confidence 99999 999999999999999999999999999984 33 2678899998642 255566655
No 72
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=99.89 E-value=3.4e-24 Score=204.77 Aligned_cols=147 Identities=16% Similarity=0.128 Sum_probs=101.5
Q ss_pred EEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCC--CCcCeEEEEcCCCCCCCCCCHHHHHHHHhhccCCCCC
Q 007554 84 LTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTK--LSFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKM 161 (599)
Q Consensus 84 ~~aI~G~sGsGKSTLl~~L~G~~~~~~~~~G~I~~~g~~~~--~~~~~~~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~ 161 (599)
.++|+||||||||||+++|+|.+.. ...|... .... ...+.++|++|+. ++.+++ + +... .
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l~i--~~~g~~~---~~~~~~~~~~~ig~~~~~~------~~~~~~-~-~~~~--~-- 64 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERLGK--RAIGFWT---EEVRDPETKKRTGFRIITT------EGKKKI-F-SSKF--F-- 64 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHGG--GEEEEEE---EEEC------CCEEEEEET------TCCEEE-E-EETT--C--
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCC--cCCCEEh---hhhccccccceeEEEeecC------cHHHHH-H-Hhhc--C--
Confidence 5899999999999999999998742 1233221 1111 2235689999975 222332 1 0100 0
Q ss_pred CHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHHHHHHHH-----HhhCCCEEEEeC--CCCCCCHHHHHHHH
Q 007554 162 PWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALE-----ILMRPRLLFLDE--PTSGLDSAAAFFVT 234 (599)
Q Consensus 162 ~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSGGerqRv~ia~a-----L~~~p~illlDE--PtsgLD~~~~~~i~ 234 (599)
. -.+..+. .+..||||||||++||++ |+.+|++++||| ||++||+.....+.
T Consensus 65 ~----------------~~~~~~~-----~~~~lSgG~~qr~~la~aa~~~~l~~~p~llilDEigp~~~ld~~~~~~l~ 123 (178)
T 1ye8_A 65 T----------------SKKLVGS-----YGVNVQYFEELAIPILERAYREAKKDRRKVIIIDEIGKMELFSKKFRDLVR 123 (178)
T ss_dssp C----------------CSSEETT-----EEECHHHHHHHHHHHHHHHHHHHHHCTTCEEEECCCSTTGGGCHHHHHHHH
T ss_pred C----------------ccccccc-----cccCcCHHHHHHHHHHhhccccccccCCCEEEEeCCCCcccCCHHHHHHHH
Confidence 0 0011222 455799999999999996 999999999999 99999999999998
Q ss_pred HHHHHHHhCCCEEEEEec--CCchHHHhccCeEEEEeCCeEEE
Q 007554 235 QTLRCLSRDGRTVIASIH--QPSSEVFELFDRLYLLSGGKTVY 275 (599)
Q Consensus 235 ~~L~~l~~~g~tvi~~~H--~p~~~i~~~~D~v~~L~~G~iv~ 275 (599)
+.|++ .+.|+|+++| +....+.+++|+ .+|+++.
T Consensus 124 ~~l~~---~~~~~i~~~H~~h~~~~~~~i~~r----~~~~i~~ 159 (178)
T 1ye8_A 124 QIMHD---PNVNVVATIPIRDVHPLVKEIRRL----PGAVLIE 159 (178)
T ss_dssp HHHTC---TTSEEEEECCSSCCSHHHHHHHTC----TTCEEEE
T ss_pred HHHhc---CCCeEEEEEccCCCchHHHHHHhc----CCcEEEE
Confidence 88865 4677889986 235677888887 5566654
No 73
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=99.87 E-value=1.9e-26 Score=225.25 Aligned_cols=180 Identities=16% Similarity=0.093 Sum_probs=119.1
Q ss_pred ccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeC-CCCcCeEEEEcCCCCCCCCCCHH
Q 007554 68 THNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKT-KLSFGTAAYVTQDDNLIGTLTVR 146 (599)
Q Consensus 68 ~~~iL~~vs~~i~~Ge~~aI~G~sGsGKSTLl~~L~G~~~~~~~~~G~I~~~g~~~-~~~~~~~~yv~Q~~~l~~~lTV~ 146 (599)
.+.+++| .++++||+++|+||||||||||+|+|+|+++. ..+.+.+.+.+. ....+.++|++|++.+++.+|+.
T Consensus 8 ~~~~~~~--~~i~~Gei~~l~GpnGsGKSTLl~~l~gl~~~---i~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~~ 82 (207)
T 1znw_A 8 TKPTARG--QPAAVGRVVVLSGPSAVGKSTVVRCLRERIPN---LHFSVSATTRAPRPGEVDGVDYHFIDPTRFQQLIDQ 82 (207)
T ss_dssp -------------CCCEEEEECSTTSSHHHHHHHHHHHSTT---CEECCCEESSCCCTTCCBTTTBEECCHHHHHHHHHT
T ss_pred CCcCCCC--CCCCCCCEEEEECCCCCCHHHHHHHHHhhCCc---eEEcccccccCCcccccCCCeeEecCHHHHHHHHhc
Confidence 4567888 68999999999999999999999999999852 233332222221 11235689999998888888887
Q ss_pred HHHHHHhhccC---CCCCCHHHHHHHHHHH------HHHcCCCccccccccCcccCCCCHHHHHHHHHHHHHhhCCCEEE
Q 007554 147 ETISYSARLRL---PDKMPWSEKRTLVERT------IIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLF 217 (599)
Q Consensus 147 e~l~~~~~~~~---~~~~~~~~~~~~v~~~------l~~l~L~~~~~~~vg~~~~~~LSGGerqRv~ia~aL~~~p~ill 217 (599)
+++........ ....++.+.++++++. ++.+|+.+..+. .++.|| +|+.+|++++
T Consensus 83 ~~l~~~~~~~~n~~~~g~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~-----~~~~lS-----------~l~~~p~~~~ 146 (207)
T 1znw_A 83 GELLEWAEIHGGLHRSGTLAQPVRAAAATGVPVLIEVDLAGARAIKKT-----MPEAVT-----------VFLAPPSWQD 146 (207)
T ss_dssp TCEEEEEEEGGGTEEEEEEHHHHHHHHHHTCCEEEECCHHHHHHHHHH-----CTTSEE-----------EEEECSCHHH
T ss_pred CCceeehhhcCchhhcCCcHHHHHHHHHcCCeEEEEeCHHHHHHHHHh-----cCCcEE-----------EEEECCCHHH
Confidence 77642211100 0012234444555554 444455444443 234566 8899999999
Q ss_pred EeCCCCCC----CHHHHHHHHHHHHHHHh-CCCEEEEEecCCchHHHhccCeEEEEe
Q 007554 218 LDEPTSGL----DSAAAFFVTQTLRCLSR-DGRTVIASIHQPSSEVFELFDRLYLLS 269 (599)
Q Consensus 218 lDEPtsgL----D~~~~~~i~~~L~~l~~-~g~tvi~~~H~p~~~i~~~~D~v~~L~ 269 (599)
|||||+|+ |+..+.++.+.++++++ .|.|+|+++||+ +++.++||++++|.
T Consensus 147 LDep~~~l~~~~d~~~~~~l~~~l~~l~~~~g~tvi~vtHdl-~~~~~~~d~i~~l~ 202 (207)
T 1znw_A 147 LQARLIGRGTETADVIQRRLDTARIELAAQGDFDKVVVNRRL-ESACAELVSLLVGT 202 (207)
T ss_dssp HHHHHHTTSCSCHHHHHHHHHHHHHHHHGGGGSSEEEECSSH-HHHHHHHHHHHC--
T ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHHHhhhccCcEEEECCCH-HHHHHHHHHHHHhc
Confidence 99999998 78899999999999975 589999999995 68999999999985
No 74
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=99.86 E-value=1.5e-23 Score=216.75 Aligned_cols=172 Identities=17% Similarity=0.153 Sum_probs=131.5
Q ss_pred eeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCC-----------cCeEEEEcCCCC-C
Q 007554 72 LEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLS-----------FGTAAYVTQDDN-L 139 (599)
Q Consensus 72 L~~vs~~i~~Ge~~aI~G~sGsGKSTLl~~L~G~~~~~~~~~G~I~~~g~~~~~~-----------~~~~~yv~Q~~~-l 139 (599)
++++|+++++|++++|+||||||||||++.|+|++++. +|+|.++|.+.... +..++|++|++. +
T Consensus 90 ~~~l~~~~~~g~vi~lvG~nGsGKTTll~~Lag~l~~~---~g~V~l~g~d~~r~~a~~ql~~~~~~~~i~~v~q~~~~~ 166 (302)
T 3b9q_A 90 KTELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRLKNE---GTKVLMAAGDTFRAAASDQLEIWAERTGCEIVVAEGDKA 166 (302)
T ss_dssp CCSCCCCSSSCEEEEEECCTTSCHHHHHHHHHHHHHHT---TCCEEEECCCCSCHHHHHHHHHHHHHHTCEEECCC--CC
T ss_pred ccccccccCCCcEEEEEcCCCCCHHHHHHHHHHHHHHc---CCeEEEEeecccchhHHHHHHHHHHhcCceEEEecCCcc
Confidence 35788999999999999999999999999999998875 89999999764221 135899999988 8
Q ss_pred CCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHHHHHHHHHhhCCC--EEE
Q 007554 140 IGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPR--LLF 217 (599)
Q Consensus 140 ~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSGGerqRv~ia~aL~~~p~--ill 217 (599)
++.+||+|++.++.... .. ..+++.+|+.+..+..+ ++|| |||++|||+|+.+|+ +|+
T Consensus 167 ~~~~~v~e~l~~~~~~~----~d--------~~lldt~gl~~~~~~~~-----~eLS---kqr~~iaral~~~P~e~lLv 226 (302)
T 3b9q_A 167 KAATVLSKAVKRGKEEG----YD--------VVLCDTSGRLHTNYSLM-----EELI---ACKKAVGKIVSGAPNEILLV 226 (302)
T ss_dssp CHHHHHHHHHHHHHHTT----CS--------EEEECCCCCSSCCHHHH-----HHHH---HHHHHHHTTSTTCCSEEEEE
T ss_pred CHHHHHHHHHHHHHHcC----Cc--------chHHhcCCCCcchhHHH-----HHHH---HHHHHHHHhhccCCCeeEEE
Confidence 88899999998864211 00 12445567766655544 4699 999999999999999 999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCCc--------hHHHhccCeEEEEeCCeE
Q 007554 218 LDEPTSGLDSAAAFFVTQTLRCLSR-DGRTVIASIHQPS--------SEVFELFDRLYLLSGGKT 273 (599)
Q Consensus 218 lDEPtsgLD~~~~~~i~~~L~~l~~-~g~tvi~~~H~p~--------~~i~~~~D~v~~L~~G~i 273 (599)
|| ||+|||+.+. ++++.+ .|.|+|++||... +.+....+.|..+..|+.
T Consensus 227 LD-ptsglD~~~~------~~~~~~~~g~t~iiiThlD~~~~~g~~l~~~~~~~~pi~~i~~Ge~ 284 (302)
T 3b9q_A 227 LD-GNTGLNMLPQ------AREFNEVVGITGLILTKLDGSARGGCVVSVVEELGIPVKFIGVGEA 284 (302)
T ss_dssp EE-GGGGGGGHHH------HHHHHHHTCCCEEEEECCSSCSCTHHHHHHHHHHCCCEEEEECSSS
T ss_pred Ee-CCCCcCHHHH------HHHHHHhcCCCEEEEeCCCCCCccChheehHHHHCCCEEEEeCCCC
Confidence 99 9999999865 345553 5899999999421 233345667888888764
No 75
>2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans}
Probab=99.85 E-value=5.5e-21 Score=201.64 Aligned_cols=86 Identities=16% Similarity=0.192 Sum_probs=76.8
Q ss_pred CcccC-CCCHHHHHHHHHHHHHh---------hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHH
Q 007554 189 NWHLR-GISGGERRRVSIALEIL---------MRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEV 258 (599)
Q Consensus 189 ~~~~~-~LSGGerqRv~ia~aL~---------~~p~illlDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~p~~~i 258 (599)
+..++ .||||||||++||++|+ .+|+||||||||++||+..+..+++.|+++. .|+|++||. . .
T Consensus 259 ~~~~~~~lS~Gqqq~l~lA~~La~~~l~~~~~~~p~iLLLDEp~s~LD~~~~~~l~~~l~~~~---qt~i~~th~-~-~- 332 (359)
T 2o5v_A 259 DFPASDYASRGEGRTVALALRRAELELLREKFGEDPVLLLDDFTAELDPHRRQYLLDLAASVP---QAIVTGTEL-A-P- 332 (359)
T ss_dssp TEEHHHHCCHHHHHHHHHHHHHHHHHHHHHHHSSCCEEEECCGGGCCCHHHHHHHHHHHHHSS---EEEEEESSC-C-T-
T ss_pred CcchhhhCCHHHHHHHHHHHHHHHhhhhhhccCCCCEEEEeCccccCCHHHHHHHHHHHHhcC---cEEEEEEec-c-c-
Confidence 33456 69999999999999999 8999999999999999999999999998873 699999994 3 2
Q ss_pred HhccCeEEEEeCCeEEEecChhhH
Q 007554 259 FELFDRLYLLSGGKTVYFGETSAA 282 (599)
Q Consensus 259 ~~~~D~v~~L~~G~iv~~G~~~~~ 282 (599)
.+|++++|++|+++..|+++++
T Consensus 333 --~~~~i~~l~~G~i~~~g~~~~~ 354 (359)
T 2o5v_A 333 --GAALTLRAQAGRFTPVADEEMQ 354 (359)
T ss_dssp --TCSEEEEEETTEEEECCCTTTS
T ss_pred --cCCEEEEEECCEEEecCCHHHH
Confidence 8999999999999999998764
No 76
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=99.85 E-value=1.9e-23 Score=212.67 Aligned_cols=144 Identities=19% Similarity=0.254 Sum_probs=95.3
Q ss_pred EEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCC--CCcCeEEEEcCCCCCCCCCCHHHHHHHHhhccCCCCC
Q 007554 84 LTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTK--LSFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKM 161 (599)
Q Consensus 84 ~~aI~G~sGsGKSTLl~~L~G~~~~~~~~~G~I~~~g~~~~--~~~~~~~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~ 161 (599)
.++|+||||||||||+|+|+|...+. +|+|.++|++.. ...+.++|++|++.+++.+||.||+.|+..... ..
T Consensus 4 ~v~lvG~nGaGKSTLln~L~g~~~~~---~G~i~~~g~~i~~~~~~~~i~~v~q~~~~~~~ltv~d~~~~g~~~~~--~~ 78 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNTLFKSQVSR---KASSWNREEKIPKTVEIKAIGHVIEEGGVKMKLTVIDTPGFGDQINN--EN 78 (270)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHC---------------CCCCCSCCEEEESCC----CCEEEEECCCC--CCSBC--TT
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCC---CCccccCCcccCcceeeeeeEEEeecCCCcCCceEEechhhhhhccc--HH
Confidence 48999999999999999999999885 899999998643 234679999999999999999999998754321 11
Q ss_pred CHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHH
Q 007554 162 PWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLS 241 (599)
Q Consensus 162 ~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSGGerqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~L~~l~ 241 (599)
.. +.+.+.+. .+..+.. ...||||||||+++||+++. ++++|||++|||+.. .+.++.+.
T Consensus 79 ~~----~~i~~~~~----~~~~~~~-----~~~LS~G~~qrv~iaRal~~---lllldep~~gL~~lD----~~~l~~L~ 138 (270)
T 3sop_A 79 CW----EPIEKYIN----EQYEKFL-----KEEVNIARKKRIPDTRVHCC---LYFISPTGHSLRPLD----LEFMKHLS 138 (270)
T ss_dssp CS----HHHHHHHH----HHHHHHH-----HHHSCTTCCSSCCCCSCCEE---EEEECCCSSSCCHHH----HHHHHHHH
T ss_pred HH----HHHHHHHH----HHHHhhh-----HHhcCcccchhhhhheeeee---eEEEecCCCcCCHHH----HHHHHHHH
Confidence 11 12233322 2223332 34699999999999999876 999999999999987 55666666
Q ss_pred hCCCEEEEEecC
Q 007554 242 RDGRTVIASIHQ 253 (599)
Q Consensus 242 ~~g~tvi~~~H~ 253 (599)
+. .+||+++|.
T Consensus 139 ~~-~~vI~Vi~K 149 (270)
T 3sop_A 139 KV-VNIIPVIAK 149 (270)
T ss_dssp TT-SEEEEEETT
T ss_pred hc-CcEEEEEec
Confidence 65 899999987
No 77
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=99.84 E-value=1.4e-22 Score=213.67 Aligned_cols=171 Identities=17% Similarity=0.153 Sum_probs=131.8
Q ss_pred eceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCC-----------cCeEEEEcCCCC-CC
Q 007554 73 EGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLS-----------FGTAAYVTQDDN-LI 140 (599)
Q Consensus 73 ~~vs~~i~~Ge~~aI~G~sGsGKSTLl~~L~G~~~~~~~~~G~I~~~g~~~~~~-----------~~~~~yv~Q~~~-l~ 140 (599)
+++|+++++|++++|+||||||||||++.|+|++++. +|+|.++|.+.... +..++|++|++. ++
T Consensus 148 ~~l~l~~~~g~vi~lvG~nGsGKTTll~~Lag~l~~~---~G~V~l~g~D~~r~~a~eql~~~~~r~~i~~v~q~~~~~~ 224 (359)
T 2og2_A 148 TELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRLKNE---GTKVLMAAGDTFRAAASDQLEIWAERTGCEIVVAEGDKAK 224 (359)
T ss_dssp CSCCCCSSSSEEEEEECCTTSCHHHHHHHHHHHHHHT---TCCEEEECCCCSCHHHHHHHHHHHHHHTCEEECCSSSSCC
T ss_pred CCcceecCCCeEEEEEcCCCChHHHHHHHHHhhcccc---CCEEEEecccccccchhHHHHHHHHhcCeEEEEecccccC
Confidence 4688899999999999999999999999999998875 89999999864221 135899999988 88
Q ss_pred CCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHHHHHHHHHhhCCC--EEEE
Q 007554 141 GTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPR--LLFL 218 (599)
Q Consensus 141 ~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSGGerqRv~ia~aL~~~p~--illl 218 (599)
+.+|++|++.++.... .. ..+++.+|+.+..+..+ .+|| |||++|||+|+.+|+ +|+|
T Consensus 225 p~~tv~e~l~~~~~~~----~d--------~~lldt~Gl~~~~~~~~-----~eLS---kqr~~iaral~~~P~e~lLvL 284 (359)
T 2og2_A 225 AATVLSKAVKRGKEEG----YD--------VVLCDTSGRLHTNYSLM-----EELI---ACKKAVGKIVSGAPNEILLVL 284 (359)
T ss_dssp HHHHHHHHHHHHHHTT----CS--------EEEEECCCCSSCCHHHH-----HHHH---HHHHHHHHHSTTCCSEEEEEE
T ss_pred hhhhHHHHHHHHHhCC----CH--------HHHHHhcCCChhhhhHH-----HHHH---HHHHHHHHHHhcCCCceEEEE
Confidence 8899999999864311 00 12345567766655544 4689 999999999999999 9999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCC--------chHHHhccCeEEEEeCCeE
Q 007554 219 DEPTSGLDSAAAFFVTQTLRCLSR-DGRTVIASIHQP--------SSEVFELFDRLYLLSGGKT 273 (599)
Q Consensus 219 DEPtsgLD~~~~~~i~~~L~~l~~-~g~tvi~~~H~p--------~~~i~~~~D~v~~L~~G~i 273 (599)
| ||+|||+.++. +++.+ .|.|+|++||.. .+.+....+.|..+..|+.
T Consensus 285 D-pttglD~~~~~------~~~~~~~g~t~iiiThlD~~~~gG~~lsi~~~~~~pI~~ig~Ge~ 341 (359)
T 2og2_A 285 D-GNTGLNMLPQA------REFNEVVGITGLILTKLDGSARGGCVVSVVEELGIPVKFIGVGEA 341 (359)
T ss_dssp E-GGGGGGGHHHH------HHHHHHTCCCEEEEESCTTCSCTHHHHHHHHHHCCCEEEEECSSS
T ss_pred c-CCCCCCHHHHH------HHHHHhcCCeEEEEecCcccccccHHHHHHHHhCCCEEEEeCCCC
Confidence 9 99999988653 44543 589999999942 1233345667777777753
No 78
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=99.84 E-value=6.8e-24 Score=229.78 Aligned_cols=189 Identities=15% Similarity=0.108 Sum_probs=148.9
Q ss_pred eEEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCE---eCCC--
Q 007554 51 RLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGH---KTKL-- 125 (599)
Q Consensus 51 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~G~sGsGKSTLl~~L~G~~~~~~~~~G~I~~~g~---~~~~-- 125 (599)
.++++|+++.+. .++.+|+++ +.+.+|++++|+||||||||||+++|+|..+++ +|.|.++|+ +...
T Consensus 131 ~l~~~~v~~~~~----tg~~vld~v-l~i~~Gq~~~IvG~sGsGKSTLl~~Iag~~~~~---~G~i~~~G~r~~ev~~~~ 202 (438)
T 2dpy_A 131 PLQRTPIEHVLD----TGVRAINAL-LTVGRGQRMGLFAGSGVGKSVLLGMMARYTRAD---VIVVGLIGERGREVKDFI 202 (438)
T ss_dssp TTTSCCCCSBCC----CSCHHHHHH-SCCBTTCEEEEEECTTSSHHHHHHHHHHHSCCS---EEEEEEESCCHHHHHHHH
T ss_pred ceEEeccceecC----CCceEEeee-EEecCCCEEEEECCCCCCHHHHHHHHhcccCCC---eEEEEEeceecHHHHHHH
Confidence 467788887762 246799999 999999999999999999999999999999885 899999998 2210
Q ss_pred --------CcCeEEEEcCC-CCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCC
Q 007554 126 --------SFGTAAYVTQD-DNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGIS 196 (599)
Q Consensus 126 --------~~~~~~yv~Q~-~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LS 196 (599)
..+.++|++|+ +.+++.+||.+|+.+.+...... .+ ......| ....+|
T Consensus 203 ~~~~~~~~l~r~i~~v~q~~~~~~~~~~v~~~~~~~ae~~~~~-------~~---------~v~~~ld------~l~~lS 260 (438)
T 2dpy_A 203 ENILGPDGRARSVVIAAPADVSPLLRMQGAAYATRIAEDFRDR-------GQ---------HVLLIMD------SLTRYA 260 (438)
T ss_dssp HTTTHHHHHHTEEEEEECTTSCHHHHHHHHHHHHHHHHHHHTT-------TC---------EEEEEEE------CHHHHH
T ss_pred HhhccccccCceEEEEECCCCCHHHHHHHHHHHHHHHHHHHhC-------CC---------CHHHHHH------hHHHHH
Confidence 13568999995 56677889999998865421000 00 0011112 134699
Q ss_pred HHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh---C-CC-----EEEEEecCCchHHHhccCeEEE
Q 007554 197 GGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSR---D-GR-----TVIASIHQPSSEVFELFDRLYL 267 (599)
Q Consensus 197 GGerqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~L~~l~~---~-g~-----tvi~~~H~p~~~i~~~~D~v~~ 267 (599)
+|| ||++|| +.+|++ |+|||+.+...+.+.++++.+ + |+ ||++++||.. ...+|+++.
T Consensus 261 ~g~-qrvslA---l~~p~~------t~glD~~~~~~l~~ll~r~~~~~~~~GsiT~~~tVlv~tHdl~---~~iad~v~~ 327 (438)
T 2dpy_A 261 MAQ-REIALA---IGEPPA------TKGYPPSVFAKLPALVERAGNGIHGGGSITAFYTVLTEGDDQQ---DPIADSARA 327 (438)
T ss_dssp HHH-HHHHHH---TTCCCC------SSSCCTTHHHHHHHHHTTCSCCSTTSCEEEEEEEEECSSSCSC---CHHHHHHHH
T ss_pred HHH-HHHHHH---hCCCcc------cccCCHHHHHHHHHHHHHHHhccCCCCcccceeEEEEeCCCcc---chhhceEEE
Confidence 999 999999 889988 999999999999999999876 3 64 9999999975 578999999
Q ss_pred EeCCeEEEecChhhH
Q 007554 268 LSGGKTVYFGETSAA 282 (599)
Q Consensus 268 L~~G~iv~~G~~~~~ 282 (599)
|.+|+++..|++++.
T Consensus 328 l~dG~Ivl~~~~~~~ 342 (438)
T 2dpy_A 328 ILDGHIVLSRRLAEA 342 (438)
T ss_dssp HSSEEEEECHHHHHT
T ss_pred EeCcEEEEeCCHHHc
Confidence 999999999877643
No 79
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=99.84 E-value=1.5e-22 Score=211.83 Aligned_cols=129 Identities=19% Similarity=0.227 Sum_probs=106.1
Q ss_pred eeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCC-C--CcCeEEEEcCCCCCCCCCCHHH
Q 007554 71 VLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTK-L--SFGTAAYVTQDDNLIGTLTVRE 147 (599)
Q Consensus 71 iL~~vs~~i~~Ge~~aI~G~sGsGKSTLl~~L~G~~~~~~~~~G~I~~~g~~~~-~--~~~~~~yv~Q~~~l~~~lTV~e 147 (599)
+++++|+.+++|++++|+||||||||||+|+|+|+++|+ +|.|.++|.+.. . ..+.+++++
T Consensus 160 ~l~~l~~~i~~g~~v~i~G~~GsGKTTll~~l~g~~~~~---~g~i~i~~~~e~~~~~~~~~i~~~~------------- 223 (330)
T 2pt7_A 160 AISAIKDGIAIGKNVIVCGGTGSGKTTYIKSIMEFIPKE---ERIISIEDTEEIVFKHHKNYTQLFF------------- 223 (330)
T ss_dssp HHHHHHHHHHHTCCEEEEESTTSCHHHHHHHGGGGSCTT---SCEEEEESSCCCCCSSCSSEEEEEC-------------
T ss_pred HHhhhhhhccCCCEEEEECCCCCCHHHHHHHHhCCCcCC---CcEEEECCeeccccccchhEEEEEe-------------
Confidence 789999999999999999999999999999999999885 899999986411 0 111222221
Q ss_pred HHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCH
Q 007554 148 TISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDS 227 (599)
Q Consensus 148 ~l~~~~~~~~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSGGerqRv~ia~aL~~~p~illlDEPtsgLD~ 227 (599)
+ |||+||++||++|..+|++|++||||+
T Consensus 224 ----------------------------------------------g--gg~~~r~~la~aL~~~p~ilildE~~~---- 251 (330)
T 2pt7_A 224 ----------------------------------------------G--GNITSADCLKSCLRMRPDRIILGELRS---- 251 (330)
T ss_dssp ----------------------------------------------B--TTBCHHHHHHHHTTSCCSEEEECCCCS----
T ss_pred ----------------------------------------------C--CChhHHHHHHHHhhhCCCEEEEcCCCh----
Confidence 1 899999999999999999999999998
Q ss_pred HHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhccCeEEEEeCCe
Q 007554 228 AAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGK 272 (599)
Q Consensus 228 ~~~~~i~~~L~~l~~~g~tvi~~~H~p~~~i~~~~D~v~~L~~G~ 272 (599)
.++.+.|+.+...+.|+|+++|+++ +.+.+||+++|.+|+
T Consensus 252 ---~e~~~~l~~~~~g~~tvi~t~H~~~--~~~~~dri~~l~~g~ 291 (330)
T 2pt7_A 252 ---SEAYDFYNVLCSGHKGTLTTLHAGS--SEEAFIRLANMSSSN 291 (330)
T ss_dssp ---THHHHHHHHHHTTCCCEEEEEECSS--HHHHHHHHHHHHHTS
T ss_pred ---HHHHHHHHHHhcCCCEEEEEEcccH--HHHHhhhheehhcCC
Confidence 2356777777654458999999975 678899999998875
No 80
>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B
Probab=99.84 E-value=1.5e-20 Score=197.38 Aligned_cols=80 Identities=30% Similarity=0.349 Sum_probs=71.3
Q ss_pred ccCCCCHHHHH------HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhccCe
Q 007554 191 HLRGISGGERR------RVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDR 264 (599)
Q Consensus 191 ~~~~LSGGerq------Rv~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~p~~~i~~~~D~ 264 (599)
.++.||||||| |+++|++|+.+|++|||||||+|||+..+..+.+.|+++.++|.|||++||++ ++.+.||+
T Consensus 245 ~~~~lS~G~~~~~~la~~l~~a~~l~~~p~~lllDEp~~~LD~~~~~~l~~~l~~~~~~~~~vi~~sH~~--~~~~~~d~ 322 (339)
T 3qkt_A 245 PLTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQVILVSHDE--ELKDAADH 322 (339)
T ss_dssp CGGGSCHHHHHHHHHHHHHHHHHHTTTTTCEEEEECCCTTCCHHHHHHHHHHHHHTGGGSSEEEEEESCG--GGGGGCSE
T ss_pred ChHHCCHHHHHHHHHHHHHHHHHHhcCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEEChH--HHHHhCCE
Confidence 46789999999 67778888889999999999999999999999999999987789999999994 46889999
Q ss_pred EEEEe--CCe
Q 007554 265 LYLLS--GGK 272 (599)
Q Consensus 265 v~~L~--~G~ 272 (599)
++.|+ +|.
T Consensus 323 ~~~l~~~~g~ 332 (339)
T 3qkt_A 323 VIRISLENGS 332 (339)
T ss_dssp EEEEEEETTE
T ss_pred EEEEEecCCc
Confidence 99996 454
No 81
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=99.82 E-value=8.1e-25 Score=215.81 Aligned_cols=153 Identities=13% Similarity=0.104 Sum_probs=98.6
Q ss_pred cceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCC------CCcCeEEEEcCCCCCCCC
Q 007554 69 HNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTK------LSFGTAAYVTQDDNLIGT 142 (599)
Q Consensus 69 ~~iL~~vs~~i~~Ge~~aI~G~sGsGKSTLl~~L~G~~~~~~~~~G~I~~~g~~~~------~~~~~~~yv~Q~~~l~~~ 142 (599)
+.-|+|||+++++|++++|+||||||||||+++|+|++ | |+|.+ |.+.. ...+.++|++|++.+|+.
T Consensus 10 ~~~l~~isl~i~~G~~~~lvGpsGsGKSTLl~~L~g~~-p-----G~i~~-g~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 82 (218)
T 1z6g_A 10 HSSGLVPRGSMNNIYPLVICGPSGVGKGTLIKKLLNEF-P-----NYFYF-SVSCTTRKKREKEKEGVDYYFIDKTIFED 82 (218)
T ss_dssp ------------CCCCEEEECSTTSSHHHHHHHHHHHS-T-----TTEEE-CCCEECSCCCSSCCBTTTBEECCHHHHHH
T ss_pred cccccCCceecCCCCEEEEECCCCCCHHHHHHHHHhhC-C-----CcEEE-eecccCCCCCcccccCCeEEECCHHHHHH
Confidence 44699999999999999999999999999999999987 3 77888 65421 113467899998766654
Q ss_pred CCH-HHHHHHHhhccCC-CCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHHHHH-----HHHHhhCCCE
Q 007554 143 LTV-RETISYSARLRLP-DKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSI-----ALEILMRPRL 215 (599)
Q Consensus 143 lTV-~e~l~~~~~~~~~-~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSGGerqRv~i-----a~aL~~~p~i 215 (599)
++. .+++.+. ..... ...+ ...++++++...+ ..+. ..+|||||||++| +++++.+|++
T Consensus 83 ~~~~~~~l~~~-~~~~~~~g~~----~~~i~~~l~~~~~-----~il~----~~lsggq~qR~~i~~~~~~~~ll~~~~~ 148 (218)
T 1z6g_A 83 KLKNEDFLEYD-NYANNFYGTL----KSEYDKAKEQNKI-----CLFE----MNINGVKQLKKSTHIKNALYIFIKPPST 148 (218)
T ss_dssp HHHTTCEEEEE-EETTEEEEEE----HHHHHHHHHTTCE-----EEEE----ECHHHHHHHTTCSSCCSCEEEEEECSCH
T ss_pred hhhccchhhhh-hcccccCCCc----HHHHHHHHhCCCc-----EEEE----ecHHHHHHHHHHhcCCCcEEEEEeCcCH
Confidence 321 1111110 00000 0011 1235556654322 1111 3689999999999 8999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHHh
Q 007554 216 LFLDEPTSGLDSAAAFFVTQTLRCLSR 242 (599)
Q Consensus 216 lllDEPtsgLD~~~~~~i~~~L~~l~~ 242 (599)
++|||||+++|..+...+.+.|.++.+
T Consensus 149 ~~Lde~~~~~d~~~~~~i~~~l~~~~~ 175 (218)
T 1z6g_A 149 DVLLSRLLTRNTENQEQIQKRMEQLNI 175 (218)
T ss_dssp HHHHHHHHHTCCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHH
Confidence 999999999999999999999987754
No 82
>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}
Probab=99.82 E-value=1.3e-20 Score=218.91 Aligned_cols=161 Identities=23% Similarity=0.325 Sum_probs=123.7
Q ss_pred HHHHHcCCCCCCCceeEEEECCEeCCCCcCeEEEEcCCCCCCCCCCHHHHHHHHhhccCCCCCCH--H---HHHHHHHHH
Q 007554 99 LDALSSRLASNAFLSGTILLNGHKTKLSFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPW--S---EKRTLVERT 173 (599)
Q Consensus 99 l~~L~G~~~~~~~~~G~I~~~g~~~~~~~~~~~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~--~---~~~~~v~~~ 173 (599)
..|..+++.+. .|+|.++|+++.. +..+||.|++.|............ . +......+.
T Consensus 385 ~~C~g~rl~~~---~~~V~i~G~~i~~--------------~~~~~v~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 447 (916)
T 3pih_A 385 SVCGGRRLNRE---ALSVKINGLNIHE--------------FTELSISEELEFLKNLNLTEREREIVGELLKEIEKRLEF 447 (916)
T ss_dssp TTTCSCCBCTT---GGGEEETTEEHHH--------------HHHSBHHHHHHHHHSCCCCTTTTTTHHHHHHHHHHHHHH
T ss_pred hhcccccCChH---hcCcEECCccHHH--------------hhhCCHHHHHHHHHhccCcHHHHHHHHhhHHHHHHHHHH
Confidence 34445566664 7889999886421 334689999888654433211100 0 111234567
Q ss_pred HHHcCCCcc-ccccccCcccCCCCHHHHHHHHHHHHHhhCCC--EEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEE
Q 007554 174 IIEMGLQDC-ADTVIGNWHLRGISGGERRRVSIALEILMRPR--LLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIAS 250 (599)
Q Consensus 174 l~~l~L~~~-~~~~vg~~~~~~LSGGerqRv~ia~aL~~~p~--illlDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~ 250 (599)
+..+||.+. .++. +.+|||||||||+||++|+++|+ +|||||||+|||+.....+++.|++++++|.|||++
T Consensus 448 L~~vgL~~l~l~r~-----~~~LSGGe~QRv~LAraL~~~p~~~lllLDEPT~gLD~~~~~~l~~~L~~L~~~G~TvivV 522 (916)
T 3pih_A 448 LVDVGLEYLTLSRS-----ATTLSGGESQRIRLATQIGSGLTGVIYVLDEPTIGLHPRDTERLIKTLKKLRDLGNTVIVV 522 (916)
T ss_dssp HHTTTCTTCBTTSB-----GGGCCHHHHHHHHHHHHHHTTCCSCEEEEECTTTTCCGGGHHHHHHHHHHTTTTTCEEEEE
T ss_pred HHHcCCccccccCC-----cccCCHHHHHHHHHHHHHhhCCCCcEEEEECCccCCCHHHHHHHHHHHHHHHhcCCEEEEE
Confidence 888999764 4554 45799999999999999999887 999999999999999999999999998889999999
Q ss_pred ecCCchHHHhccCeEEEE------eCCeEEEecChhhHH
Q 007554 251 IHQPSSEVFELFDRLYLL------SGGKTVYFGETSAAF 283 (599)
Q Consensus 251 ~H~p~~~i~~~~D~v~~L------~~G~iv~~G~~~~~~ 283 (599)
+||+ +. ...+|+|++| ++|++++.|+++++.
T Consensus 523 tHd~-~~-~~~aD~ii~lgpgag~~~G~iv~~G~~~e~~ 559 (916)
T 3pih_A 523 EHDE-EV-IRNADHIIDIGPGGGTNGGRVVFQGTVDELL 559 (916)
T ss_dssp CCCH-HH-HHTCSEEEEEESSSGGGCSEEEEEECHHHHH
T ss_pred eCCH-HH-HHhCCEEEEEcCCcccCCCEEEEeechhhhh
Confidence 9995 44 4569999999 899999999998865
No 83
>4ad8_A DNA repair protein RECN; DNA binding protein, ATPase domain; HET: DNA; 4.00A {Deinococcus radiodurans}
Probab=99.81 E-value=6.3e-20 Score=203.39 Aligned_cols=78 Identities=27% Similarity=0.387 Sum_probs=71.2
Q ss_pred ccCCC-CHHHHHHHHHHHHHhhCC--CEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhccCeEEE
Q 007554 191 HLRGI-SGGERRRVSIALEILMRP--RLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYL 267 (599)
Q Consensus 191 ~~~~L-SGGerqRv~ia~aL~~~p--~illlDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~p~~~i~~~~D~v~~ 267 (599)
.+..| ||||||||+||++|+.+| ++|||||||+|||+.++..+.+.|+++++ |+|||++||+|. +...||++++
T Consensus 393 ~~~~l~SgG~~qrv~la~~l~~~~~~~~lilDEp~~gld~~~~~~i~~~l~~~~~-~~~vi~itH~~~--~~~~~d~~~~ 469 (517)
T 4ad8_A 393 PLSDVASGGELSRVMLAVSTVLGADTPSVVFDEVDAGIGGAAAIAVAEQLSRLAD-TRQVLVVTHLAQ--IAARAHHHYK 469 (517)
T ss_dssp BSSSSSCSSHHHHHHHHHHHHHCCCSSEEEECSCSSSCCTHHHHHHHHHHHHHHH-HSEEEEECCCHH--HHHHSSEEEE
T ss_pred cHHhcCCHHHHHHHHHHHHHHhCCCCCEEEEeCCcCCCCHHHHHHHHHHHHHHhC-CCEEEEEecCHH--HHHhCCEEEE
Confidence 34567 999999999999999999 99999999999999999999999999987 899999999963 5567999999
Q ss_pred EeCC
Q 007554 268 LSGG 271 (599)
Q Consensus 268 L~~G 271 (599)
|++|
T Consensus 470 ~~~~ 473 (517)
T 4ad8_A 470 VEKQ 473 (517)
T ss_dssp EECC
T ss_pred Eecc
Confidence 9665
No 84
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=99.80 E-value=2.9e-22 Score=207.97 Aligned_cols=123 Identities=18% Similarity=0.103 Sum_probs=97.8
Q ss_pred EeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCcCeEEEEcCCCCCCCCCCHHHHHHHHhhccCC
Q 007554 79 AEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLSFGTAAYVTQDDNLIGTLTVRETISYSARLRLP 158 (599)
Q Consensus 79 i~~Ge~~aI~G~sGsGKSTLl~~L~G~~~~~~~~~G~I~~~g~~~~~~~~~~~yv~Q~~~l~~~lTV~e~l~~~~~~~~~ 158 (599)
+++|+++||+||||||||||+++|+|++++. .|. +.++||+|++.+++. |++||+.+....
T Consensus 87 ~~~g~ivgI~G~sGsGKSTL~~~L~gll~~~---~G~------------~~v~~v~qd~~~~~~-t~~e~~~~~~~~--- 147 (312)
T 3aez_A 87 RPVPFIIGVAGSVAVGKSTTARVLQALLARW---DHH------------PRVDLVTTDGFLYPN-AELQRRNLMHRK--- 147 (312)
T ss_dssp SCCCEEEEEECCTTSCHHHHHHHHHHHHHTS---TTC------------CCEEEEEGGGGBCCH-HHHHHTTCTTCT---
T ss_pred CCCCEEEEEECCCCchHHHHHHHHHhhcccc---CCC------------CeEEEEecCccCCcc-cHHHHHHHHHhc---
Confidence 7999999999999999999999999998773 331 458999999999988 999998653211
Q ss_pred CCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCH
Q 007554 159 DKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDS 227 (599)
Q Consensus 159 ~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSGGerqRv~ia~aL~~~p~illlDEPtsgLD~ 227 (599)
..+.....+.+.+.++.++ .+..+.. +..|||||+||+++|++++.+|+|||+|||+..+|+
T Consensus 148 -g~~~~~d~~~~~~~L~~l~-~~~~~~~-----~~~lS~G~~qRv~~a~al~~~p~ilIlDep~~~~d~ 209 (312)
T 3aez_A 148 -GFPESYNRRALMRFVTSVK-SGSDYAC-----APVYSHLHYDIIPGAEQVVRHPDILILEGLNVLQTG 209 (312)
T ss_dssp -TSGGGBCHHHHHHHHHHHH-TTCSCEE-----EEEEETTTTEEEEEEEEEECSCSEEEEECTTTTCCC
T ss_pred -CCChHHHHHHHHHHHHHhC-CCcccCC-----cccCChhhhhhhhhHHHhccCCCEEEECCccccCCc
Confidence 1122223355677888887 4444443 346999999999999999999999999999999986
No 85
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=99.80 E-value=4.9e-21 Score=196.99 Aligned_cols=183 Identities=12% Similarity=0.113 Sum_probs=118.1
Q ss_pred cceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCcee-EEEECCEeCCC--CcCeEEEEcCCCCCCCCCCH
Q 007554 69 HNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSG-TILLNGHKTKL--SFGTAAYVTQDDNLIGTLTV 145 (599)
Q Consensus 69 ~~iL~~vs~~i~~Ge~~aI~G~sGsGKSTLl~~L~G~~~~~~~~~G-~I~~~g~~~~~--~~~~~~yv~Q~~~l~~~lTV 145 (599)
..+|+++++.+++|++++|+||||||||||++.|+|...+. +| .|.+.+..... ..+++.++.|+.. +++
T Consensus 22 ~~~Ld~i~~~l~~G~~~~i~G~~G~GKTTl~~~ia~~~~~~---~G~~v~~~~~e~~~~~~~~r~~~~~~~~~----~~~ 94 (296)
T 1cr0_A 22 CTGINDKTLGARGGEVIMVTSGSGMGKSTFVRQQALQWGTA---MGKKVGLAMLEESVEETAEDLIGLHNRVR----LRQ 94 (296)
T ss_dssp CTTHHHHHCSBCTTCEEEEEESTTSSHHHHHHHHHHHHHHT---SCCCEEEEESSSCHHHHHHHHHHHHTTCC----GGG
T ss_pred HHHHHHHhcCCCCCeEEEEEeCCCCCHHHHHHHHHHHHHHH---cCCeEEEEeCcCCHHHHHHHHHHHHcCCC----hhh
Confidence 56899999999999999999999999999999999988764 46 56443321110 0111222222211 122
Q ss_pred HHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHH-HHHHHHHHHHhhCCCEEEEeCCCC-
Q 007554 146 RETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGE-RRRVSIALEILMRPRLLFLDEPTS- 223 (599)
Q Consensus 146 ~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSGGe-rqRv~ia~aL~~~p~illlDEPts- 223 (599)
.+++.... + +..+..+.++++++..++. ..+ .+..+|.+| +||+. |+++..+|+++++||||+
T Consensus 95 ~~~l~~~~-~------~~~~~~~~~~~~l~~~~l~-i~~------~~~~~~~~~l~~~~~-a~~~~~~p~llilDept~~ 159 (296)
T 1cr0_A 95 SDSLKREI-I------ENGKFDQWFDELFGNDTFH-LYD------SFAEAETDRLLAKLA-YMRSGLGCDVIILDHISIV 159 (296)
T ss_dssp CHHHHHHH-H------HHTHHHHHHHHHHSSSCEE-EEC------CCCSCCHHHHHHHHH-HHHHTTCCSEEEEEEEC--
T ss_pred ccccccCC-C------CHHHHHHHHHHHhccCCEE-EEC------CCCCCCHHHHHHHHH-HHHHhcCCCEEEEcCcccc
Confidence 23333221 1 1122233344443322221 111 123588998 67777 999999999999999999
Q ss_pred --C---CCH-HHHHHHHHHHHHHHh-CCCEEEEEecCCc-h--------------------HHHhccCeEEEEeCCeE
Q 007554 224 --G---LDS-AAAFFVTQTLRCLSR-DGRTVIASIHQPS-S--------------------EVFELFDRLYLLSGGKT 273 (599)
Q Consensus 224 --g---LD~-~~~~~i~~~L~~l~~-~g~tvi~~~H~p~-~--------------------~i~~~~D~v~~L~~G~i 273 (599)
+ +|. .....+++.|+++++ .|.|||+++|+.. . .+...||+|++|++|+.
T Consensus 160 ~~~~~~~d~~~~~~~i~~~L~~la~~~~~~vi~vsh~~r~~~~~~~~~~~~p~l~dl~~s~~i~~~aD~vi~L~~~~~ 237 (296)
T 1cr0_A 160 VSASGESDERKMIDNLMTKLKGFAKSTGVVLVVICHLKNPDKGKAHEEGRPVSITDLRGSGALRQLSDTIIALERNQQ 237 (296)
T ss_dssp ---------CHHHHHHHHHHHHHHHHHCCEEEEEEECC-----------------CCC---CHHHHCSEEEEEEEC--
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHhCCeEEEEEecCccccccccccCCCCCHHHhcccHHhHhhCcEEEEEecCcc
Confidence 5 555 677889999999986 4999999999951 3 57789999999998874
No 86
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=99.79 E-value=3.1e-21 Score=193.30 Aligned_cols=179 Identities=12% Similarity=0.096 Sum_probs=109.4
Q ss_pred cccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCcCeEEEEcCCCCCCCCCCHH
Q 007554 67 ETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLSFGTAAYVTQDDNLIGTLTVR 146 (599)
Q Consensus 67 ~~~~iL~~vs~~i~~Ge~~aI~G~sGsGKSTLl~~L~G~~~~~~~~~G~I~~~g~~~~~~~~~~~yv~Q~~~l~~~lTV~ 146 (599)
+++.+|+|+||++++|+++||+||||||||||+++|+|++ |.+.++ ...+.++|++|++ +++.+|+.
T Consensus 10 ~~~~~l~~isl~i~~g~iigI~G~~GsGKSTl~k~L~~~l-------G~~~~~-----~~~~~i~~v~~d~-~~~~l~~~ 76 (245)
T 2jeo_A 10 GVDLGTENLYFQSMRPFLIGVSGGTASGKSTVCEKIMELL-------GQNEVE-----QRQRKVVILSQDR-FYKVLTAE 76 (245)
T ss_dssp -------------CCSEEEEEECSTTSSHHHHHHHHHHHH-------TGGGSC-----GGGCSEEEEEGGG-GBCCCCHH
T ss_pred CCceeecceeccCCCCEEEEEECCCCCCHHHHHHHHHHHh-------chhccc-----ccCCceEEEeCCc-CccccCHh
Confidence 4577999999999999999999999999999999999975 222233 1235689999985 77789999
Q ss_pred HHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCC
Q 007554 147 ETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLD 226 (599)
Q Consensus 147 e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSGGerqRv~ia~aL~~~p~illlDEPtsgLD 226 (599)
|++.+....... ..+.....+.+.+.++.+ .+..+.. +..+|+||+||+.+ ++++.+|+++++|||....|
T Consensus 77 ~~~~~~~~~~~~-~~~~~~~~~~~~~~L~~l--~~~~~~~-----~~~ls~g~~~r~~~-~~~~~~~~~lilDg~~~~~~ 147 (245)
T 2jeo_A 77 QKAKALKGQYNF-DHPDAFDNDLMHRTLKNI--VEGKTVE-----VPTYDFVTHSRLPE-TTVVYPADVVLFEGILVFYS 147 (245)
T ss_dssp HHHHHHTTCCCT-TSGGGBCHHHHHHHHHHH--HTTCCEE-----ECCEETTTTEECSS-CEEECCCSEEEEECTTTTTS
T ss_pred HhhhhhccCCCC-CCcccccHHHHHHHHHHH--HCCCCee-----cccccccccCccCc-eEEecCCCEEEEeCcccccc
Confidence 999875432110 001111123344444443 3334443 35799999999988 58888999999999988887
Q ss_pred HHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHh-ccCeEEEEeCCeEEEecChhhHHHHH
Q 007554 227 SAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFE-LFDRLYLLSGGKTVYFGETSAAFEFF 286 (599)
Q Consensus 227 ~~~~~~i~~~L~~l~~~g~tvi~~~H~p~~~i~~-~~D~v~~L~~G~iv~~G~~~~~~~~f 286 (599)
.. +.++ .+.+|++++|+. ..+.+ +++++ ++|+ +.+++...+
T Consensus 148 ~~--------l~~~--~~~~i~v~th~~-~~~~r~~~r~~---~~G~-----~~e~~~~~~ 189 (245)
T 2jeo_A 148 QE--------IRDM--FHLRLFVDTDSD-VRLSRRVLRDV---RRGR-----DLEQILTQY 189 (245)
T ss_dssp HH--------HHTT--CSEEEEEECCHH-HHHHHHHHHHT---C--------CHHHHHHHH
T ss_pred HH--------HHHh--cCeEEEEECCHH-HHHHHHHHHHH---HcCC-----CHHHHHHHH
Confidence 64 2222 378999999973 33433 34444 5564 456665433
No 87
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=99.79 E-value=6.3e-20 Score=203.79 Aligned_cols=156 Identities=13% Similarity=0.111 Sum_probs=119.8
Q ss_pred EEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCcCeEEEEcCCCCCCCCCCHHHHHHHHhhc
Q 007554 76 TGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLSFGTAAYVTQDDNLIGTLTVRETISYSARL 155 (599)
Q Consensus 76 s~~i~~Ge~~aI~G~sGsGKSTLl~~L~G~~~~~~~~~G~I~~~g~~~~~~~~~~~yv~Q~~~l~~~lTV~e~l~~~~~~ 155 (599)
++.+++|++++|+||||||||||++.++|...+ .|+ +.+.|++|++. .++.++. .+
T Consensus 275 ~g~i~~G~i~~i~G~~GsGKSTLl~~l~g~~~~----~G~------------~vi~~~~ee~~----~~l~~~~---~~- 330 (525)
T 1tf7_A 275 GGGFFKDSIILATGATGTGKTLLVSRFVENACA----NKE------------RAILFAYEESR----AQLLRNA---YS- 330 (525)
T ss_dssp TSSEESSCEEEEEECTTSSHHHHHHHHHHHHHT----TTC------------CEEEEESSSCH----HHHHHHH---HT-
T ss_pred CCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHh----CCC------------CEEEEEEeCCH----HHHHHHH---HH-
Confidence 458999999999999999999999999998765 232 12456677641 1233332 11
Q ss_pred cCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHH-----HH
Q 007554 156 RLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSA-----AA 230 (599)
Q Consensus 156 ~~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSGGerqRv~ia~aL~~~p~illlDEPtsgLD~~-----~~ 230 (599)
. ..+ +++ +...|+.+..+. .+..|||||+||+.+|+++..+|+++++| ||+|||.. .+
T Consensus 331 -~--g~~-------~~~-~~~~g~~~~~~~-----~p~~LS~g~~q~~~~a~~l~~~p~llilD-p~~~Ld~~~~~~~~~ 393 (525)
T 1tf7_A 331 -W--GMD-------FEE-MERQNLLKIVCA-----YPESAGLEDHLQIIKSEINDFKPARIAID-SLSALARGVSNNAFR 393 (525)
T ss_dssp -T--SCC-------HHH-HHHTTSEEECCC-----CGGGSCHHHHHHHHHHHHHTTCCSEEEEE-CHHHHTSSSCHHHHH
T ss_pred -c--CCC-------HHH-HHhCCCEEEEEe-----ccccCCHHHHHHHHHHHHHhhCCCEEEEc-ChHHHHhhCChHHHH
Confidence 1 111 112 224566555544 44679999999999999999999999999 99999999 99
Q ss_pred HHHHHHHHHHHhCCCEEEEEecCCc---------hHHHhccCeEEEEeCCe
Q 007554 231 FFVTQTLRCLSRDGRTVIASIHQPS---------SEVFELFDRLYLLSGGK 272 (599)
Q Consensus 231 ~~i~~~L~~l~~~g~tvi~~~H~p~---------~~i~~~~D~v~~L~~G~ 272 (599)
..+.++++.+++.|.|||+++|+.. ..+..++|+|++|++|+
T Consensus 394 ~~i~~ll~~l~~~g~tvilvsh~~~~~~~~~~~~~~l~~~~D~vi~L~~ge 444 (525)
T 1tf7_A 394 QFVIGVTGYAKQEEITGLFTNTSDQFMGAHSITDSHISTITDTIILLQYVE 444 (525)
T ss_dssp HHHHHHHHHHHHTTCEEEEEEECSSSSCCCSSCSSCCTTTCSEEEEEEEEE
T ss_pred HHHHHHHHHHHhCCCEEEEEECcccccCcccccCcccceeeeEEEEEEEEE
Confidence 9999999999888999999999961 45677899999999886
No 88
>2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B*
Probab=99.79 E-value=1e-20 Score=223.32 Aligned_cols=172 Identities=19% Similarity=0.123 Sum_probs=120.4
Q ss_pred eEEEEe-----EEEEEEccCCcccceeeceEEEEeC-------CeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEE
Q 007554 51 RLTWKD-----LTVMVTLSNGETHNVLEGLTGYAEP-------GTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILL 118 (599)
Q Consensus 51 ~l~~~~-----ls~~~~~~~~~~~~iL~~vs~~i~~-------Ge~~aI~G~sGsGKSTLl~~L~G~~~~~~~~~G~I~~ 118 (599)
.|+++| |++.+. +++.+++|+++.+++ |++++|+||||||||||||+| |++.+-
T Consensus 750 ~l~i~~~rHP~l~~~~~----~~~~v~ndi~l~~~~~~~~~~~g~i~~ItGpNgsGKSTlLr~i-Gl~~~~--------- 815 (1022)
T 2o8b_B 750 FLELKGSRHPCITKTFF----GDDFIPNDILIGCEEEEQENGKAYCVLVTGPNMGGKSTLMRQA-GLLAVM--------- 815 (1022)
T ss_dssp CEEEEEECCCC----------CCCCCCEEEEESCCCSCC---CCCEEEEECCTTSSHHHHHHHH-HHHHHH---------
T ss_pred eEEEEeccccEEEEEec----CCceEeeeeeeccccccccCCCCcEEEEECCCCCChHHHHHHH-HHHHHH---------
Confidence 488999 887663 246799999999987 999999999999999999999 886531
Q ss_pred CCEeCCCCcCeEE-EEcCCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCH
Q 007554 119 NGHKTKLSFGTAA-YVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISG 197 (599)
Q Consensus 119 ~g~~~~~~~~~~~-yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSG 197 (599)
.++| ||||+.. .+||.|++.. + +|+.+..+. ..+.+|+
T Consensus 816 ---------aqiG~~Vpq~~~---~l~v~d~I~~----r--------------------ig~~d~~~~-----~~stf~~ 854 (1022)
T 2o8b_B 816 ---------AQMGCYVPAEVC---RLTPIDRVFT----R--------------------LGASDRIMS-----GESTFFV 854 (1022)
T ss_dssp ---------HTTTCCEESSEE---EECCCSBEEE----E--------------------CC--------------CHHHH
T ss_pred ---------hheeEEeccCcC---CCCHHHHHHH----H--------------------cCCHHHHhh-----chhhhHH
Confidence 2234 8999763 4466554411 1 122211111 1234677
Q ss_pred HHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHH-HHHHHHHHHHHhC-CCEEEEEecCCchHHHhccCeEEEEeCCeEE-
Q 007554 198 GERRRVSIALEILMRPRLLFLDEPTSGLDSAAA-FFVTQTLRCLSRD-GRTVIASIHQPSSEVFELFDRLYLLSGGKTV- 274 (599)
Q Consensus 198 GerqRv~ia~aL~~~p~illlDEPtsgLD~~~~-~~i~~~L~~l~~~-g~tvi~~~H~p~~~i~~~~D~v~~L~~G~iv- 274 (599)
+++ ++++|++++++|+++||||||+|+|+... ..+...|++++++ |.++|++||++ +.+...+|++.++ +|++.
T Consensus 855 em~-~~a~al~la~~~sLlLLDEp~~Gtd~~dg~~~~~~il~~L~~~~g~~vl~~TH~~-el~~~~~d~~~v~-~g~~~~ 931 (1022)
T 2o8b_B 855 ELS-ETASILMHATAHSLVLVDELGRGTATFDGTAIANAVVKELAETIKCRTLFSTHYH-SLVEDYSQNVAVR-LGHMAC 931 (1022)
T ss_dssp HHH-HHHHHHHHCCTTCEEEEECTTTTSCHHHHHHHHHHHHHHHHHTSCCEEEEECCCH-HHHHHTSSCSSEE-EEEEEE
T ss_pred HHH-HHHHHHHhCCCCcEEEEECCCCCCChHHHHHHHHHHHHHHHhcCCCEEEEEeCCH-HHHHHhCCcceee-cCeEEE
Confidence 666 49999999999999999999999999985 5578889999876 89999999995 5677789998887 58887
Q ss_pred -EecChh
Q 007554 275 -YFGETS 280 (599)
Q Consensus 275 -~~G~~~ 280 (599)
+.|+++
T Consensus 932 ~~~~~~~ 938 (1022)
T 2o8b_B 932 MVENECE 938 (1022)
T ss_dssp C------
T ss_pred EEecCcc
Confidence 455543
No 89
>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A
Probab=99.78 E-value=7.5e-19 Score=203.11 Aligned_cols=135 Identities=27% Similarity=0.372 Sum_probs=110.9
Q ss_pred CCCCHHHHHHHHhhccCCCC---CC---HHHHHHHHHHHHHHcCCCcc-ccccccCcccCCCCHHHHHHHHHHHHHhhCC
Q 007554 141 GTLTVRETISYSARLRLPDK---MP---WSEKRTLVERTIIEMGLQDC-ADTVIGNWHLRGISGGERRRVSIALEILMRP 213 (599)
Q Consensus 141 ~~lTV~e~l~~~~~~~~~~~---~~---~~~~~~~v~~~l~~l~L~~~-~~~~vg~~~~~~LSGGerqRv~ia~aL~~~p 213 (599)
..+||.|++.|...+.++.. .. .++..+++ +.+..+||... .|+.+ .+|||||||||.||++|..+|
T Consensus 450 ~~ltV~e~~~f~e~l~l~~~~~~i~~~~~~ei~~Rl-~~L~~vGL~~l~ldR~~-----~tLSGGEkQRV~LA~aL~~~~ 523 (972)
T 2r6f_A 450 TAMSVTEALAFFDGLELTEKEAQIARLILREIRDRL-GFLQNVGLDYLTLSRSA-----GTLSGGEAQRIRLATQIGSRL 523 (972)
T ss_dssp HTSBHHHHHHHHHHCCCCHHHHHHSHHHHHHHHHHH-HHHHHHTCTTSBSSSBG-----GGCCHHHHHHHHHHHHHTTCC
T ss_pred hhCCHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHH-HHhhhCCCCccccCCcc-----ccCCHHHHHHHHHHHHHhhCC
Confidence 35799999999877654321 00 02344555 45889999864 56654 479999999999999999985
Q ss_pred --CEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhccCeEEEE------eCCeEEEecChhhHH
Q 007554 214 --RLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLL------SGGKTVYFGETSAAF 283 (599)
Q Consensus 214 --~illlDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~p~~~i~~~~D~v~~L------~~G~iv~~G~~~~~~ 283 (599)
++|+|||||+|||+.....+++.|++|++.|.|||+++|++ +. .+.+|+|++| ++|++++.|+++++.
T Consensus 524 ~~~llILDEPTagLdp~~~~~L~~~L~~Lr~~G~TVIvVeHdl-~~-i~~ADrIi~LgpgaG~~gG~iv~~G~~~e~~ 599 (972)
T 2r6f_A 524 TGVLYVLDEPSIGLHQRDNDRLIATLKSMRDLGNTLIVVEHDE-DT-MLAADYLIDIGPGAGIHGGEVVAAGTPEEVM 599 (972)
T ss_dssp CSCEEEEECTTTTCCGGGHHHHHHHHHHHHTTTCEEEEECCCH-HH-HHSCSEEEEECSSSGGGCCSEEEEECTTTTT
T ss_pred CCCEEEEeCcccCCCHHHHHHHHHHHHHHHhCCCEEEEEecCH-HH-HHhCCEEEEeCCCccCCCCEEEEecCHHHHH
Confidence 99999999999999999999999999988899999999995 44 5689999999 799999999988754
No 90
>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*
Probab=99.77 E-value=2.6e-19 Score=206.50 Aligned_cols=172 Identities=19% Similarity=0.217 Sum_probs=127.0
Q ss_pred CCCCcHHHHHHHHHcCCCCC------CCceeEEEECCEeCCCCcCeEEEEcCCCCCCCCCCHHHHHHHHhhccC------
Q 007554 90 PSGSGKSTLLDALSSRLASN------AFLSGTILLNGHKTKLSFGTAAYVTQDDNLIGTLTVRETISYSARLRL------ 157 (599)
Q Consensus 90 ~sGsGKSTLl~~L~G~~~~~------~~~~G~I~~~g~~~~~~~~~~~yv~Q~~~l~~~lTV~e~l~~~~~~~~------ 157 (599)
.|..||++|.+.+....-|. ...+|+|.++|+++... ..+++.|.+.|......
T Consensus 270 ~~~~~~~~~~~~~~~~~Cp~C~G~Rl~~~~~~v~~~G~~I~~~--------------~~~~v~e~~~~~~~~~~~~~~~~ 335 (842)
T 2vf7_A 270 ESASMKKRVQGYMISEECPLCHGKRLRQEALNVTFAGLDITEL--------------SRLPLARVSELLRPYAEEREPGH 335 (842)
T ss_dssp CCHHHHHHHGGGCEEEECSSSSSSCBCTTTTTCBBTTBCHHHH--------------HHSBHHHHHHHHHHHHTTCSSCS
T ss_pred cCHHHHHHHHhhccccCCCCCCCCccCHHHhhcccCCccHHHH--------------hhcCHHHHHHHHHhhhhhhhhcc
Confidence 35578999999887633221 01367788888753210 11345555554433210
Q ss_pred ------CCCCC------HHHHHHHHHHHHHHcCCCcc-ccccccCcccCCCCHHHHHHHHHHHHHhhCC--CEEEEeCCC
Q 007554 158 ------PDKMP------WSEKRTLVERTIIEMGLQDC-ADTVIGNWHLRGISGGERRRVSIALEILMRP--RLLFLDEPT 222 (599)
Q Consensus 158 ------~~~~~------~~~~~~~v~~~l~~l~L~~~-~~~~vg~~~~~~LSGGerqRv~ia~aL~~~p--~illlDEPt 222 (599)
..... ..+..++++ .+..+||.+. .++.+ ..|||||||||.||++|..+| .+|+|||||
T Consensus 336 ~~~~~~~~~~~~i~~~i~~ei~~rl~-~L~~vGL~~l~l~r~~-----~tLSGGe~QRV~LA~aL~~~p~~~llILDEPT 409 (842)
T 2vf7_A 336 AERVKNRPEQAIALQRMAADLVKRLD-VLLHLGLGYLGLDRST-----PTLSPGELQRLRLATQLYSNLFGVVYVLDEPS 409 (842)
T ss_dssp TTSSSSCSSHHHHHHHHHHHHHHHHH-HHHHTTCTTSBTTCBG-----GGSCHHHHHHHHHHHHTTTCCCSCEEEEECTT
T ss_pred cchhhcchhhHHHHHHHHHHHHHHHH-HHHhCCCCcCCccCCc-----CcCCHHHHHHHHHHHHHhhCCCCeEEEeeCcc
Confidence 00000 124455665 6888999865 56644 579999999999999999999 599999999
Q ss_pred CCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhccCeEEEE------eCCeEEEecChhhHH
Q 007554 223 SGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLL------SGGKTVYFGETSAAF 283 (599)
Q Consensus 223 sgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~p~~~i~~~~D~v~~L------~~G~iv~~G~~~~~~ 283 (599)
+|||+.....+.+.|++|++.|.|||+++|++ + +.+.+|+|++| ++|++++.|++++..
T Consensus 410 ~~Ld~~~~~~L~~~l~~L~~~G~TVIvVeHdl-~-~l~~aD~ii~lgpgaG~~~G~iv~~g~~~~~~ 474 (842)
T 2vf7_A 410 AGLHPADTEALLSALENLKRGGNSLFVVEHDL-D-VIRRADWLVDVGPEAGEKGGEILYSGPPEGLK 474 (842)
T ss_dssp TTCCGGGHHHHHHHHHHHHTTTCEEEEECCCH-H-HHTTCSEEEEECSSSGGGCCSEEEEECGGGGG
T ss_pred ccCCHHHHHHHHHHHHHHHHcCCEEEEEcCCH-H-HHHhCCEEEEeCCCcccCCCEEEEecCHHHHH
Confidence 99999999999999999988899999999995 4 56789999999 799999999988754
No 91
>2ygr_A Uvrabc system protein A; hydrolase, nucleotide excision repair; 3.40A {Mycobacterium tuberculosis} PDB: 3zqj_A
Probab=99.77 E-value=1.1e-18 Score=202.26 Aligned_cols=137 Identities=25% Similarity=0.347 Sum_probs=110.2
Q ss_pred CCCCCHHHHHHHHhhccCCCCCC------HHHHHHHHHHHHHHcCCCcc-ccccccCcccCCCCHHHHHHHHHHHHHhhC
Q 007554 140 IGTLTVRETISYSARLRLPDKMP------WSEKRTLVERTIIEMGLQDC-ADTVIGNWHLRGISGGERRRVSIALEILMR 212 (599)
Q Consensus 140 ~~~lTV~e~l~~~~~~~~~~~~~------~~~~~~~v~~~l~~l~L~~~-~~~~vg~~~~~~LSGGerqRv~ia~aL~~~ 212 (599)
+..+||.|.+.|...+.++.... .++..+++ +.+..+||... .|+.+ .+|||||||||.||++|..+
T Consensus 466 ~~~ltV~e~l~f~enl~l~~~~~~i~~~i~~ei~~Rl-~~L~~vGL~~l~l~r~~-----~tLSGGEkQRV~LA~aL~~~ 539 (993)
T 2ygr_A 466 VCELSIADCADFLNALTLGPREQAIAGQVLKEIRSRL-GFLLDVGLEYLSLSRAA-----ATLSGGEAQRIRLATQIGSG 539 (993)
T ss_dssp SSHHHHHHHHHTTTTTTSCHHHHHHHHHHHHHHHHHH-HHHHHHTGGGSCTTCBG-----GGCCHHHHHHHHHHHHHTTC
T ss_pred HhhCCHHHHHHHHHhcCCCHHHhHHHHHHHHHHHHHH-HHHhhCCCCccccCCCc-----ccCCHHHHHHHHHHHHHhhC
Confidence 45579999999865443221000 02344555 35788999764 56644 57999999999999999999
Q ss_pred --CCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhccCeEEEE------eCCeEEEecChhhHHH
Q 007554 213 --PRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLL------SGGKTVYFGETSAAFE 284 (599)
Q Consensus 213 --p~illlDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~p~~~i~~~~D~v~~L------~~G~iv~~G~~~~~~~ 284 (599)
|++|+|||||+|||+.....+++.|++|++.|.|||+++|++ +. .+.+|+|++| ++|++++.|++++...
T Consensus 540 ~~~~llILDEPTagLdp~~~~~L~~~L~~Lr~~G~TVIvVeHdl-~~-i~~ADrIi~Lgp~aG~~gG~iv~~G~~~e~~~ 617 (993)
T 2ygr_A 540 LVGVLYVLDEPSIGLHQRDNRRLIETLTRLRDLGNTLIVVEHDE-DT-IEHADWIVDIGPGAGEHGGRIVHSGPYDELLR 617 (993)
T ss_dssp CCSCEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCH-HH-HHTCSEEEEECSSSGGGCCSCCEEECHHHHHH
T ss_pred CCCcEEEEeCcccCCCHHHHHHHHHHHHHHHHcCCEEEEECCCH-HH-HHhCCEEEEecCccccCCCEEEEeeCHHHhhh
Confidence 589999999999999999999999999988999999999995 44 5689999999 7999999999988653
No 92
>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*
Probab=99.77 E-value=6.4e-19 Score=205.64 Aligned_cols=152 Identities=15% Similarity=0.174 Sum_probs=112.2
Q ss_pred ccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHH--------HcCCCCCCCceeEEEECCEeCCCCcCeEEEEcCCCCC
Q 007554 68 THNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDAL--------SSRLASNAFLSGTILLNGHKTKLSFGTAAYVTQDDNL 139 (599)
Q Consensus 68 ~~~iL~~vs~~i~~Ge~~aI~G~sGsGKSTLl~~L--------~G~~~~~~~~~G~I~~~g~~~~~~~~~~~yv~Q~~~l 139 (599)
.+.+++|+++.+++|++++|+||||||||||||++ .|...|. ++.. ++.+ +.+
T Consensus 648 ~~~v~ndisl~~~~g~i~~ItGpNGsGKSTlLr~ial~~~~aq~G~~vpa---~~~~-------------~~~~---d~i 708 (934)
T 3thx_A 648 IAFIPNDVYFEKDKQMFHIITGPNMGGKSTYIRQTGVIVLMAQIGCFVPC---ESAE-------------VSIV---DCI 708 (934)
T ss_dssp CCCCCEEEEEETTTBCEEEEECCTTSSHHHHHHHHHHHHHHHHHTCCBSE---EEEE-------------EECC---SEE
T ss_pred ceeecccceeecCCCeEEEEECCCCCCHHHHHHHHHHHHHHHhcCCcccc---cccc-------------chHH---HHH
Confidence 46799999999999999999999999999999999 4433321 1110 0100 001
Q ss_pred CCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHHHHHHHHH--hhCCCEEE
Q 007554 140 IGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEI--LMRPRLLF 217 (599)
Q Consensus 140 ~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSGGerqRv~ia~aL--~~~p~ill 217 (599)
+..+|+.+. ..+++|+|++++..+|++| +++|+++|
T Consensus 709 ----------------------------------~~~ig~~d~--------l~~~lStf~~e~~~~a~il~~a~~~sLlL 746 (934)
T 3thx_A 709 ----------------------------------LARVGAGDS--------QLKGVSTFMAEMLETASILRSATKDSLII 746 (934)
T ss_dssp ----------------------------------EEECC-----------------CHHHHHHHHHHHHHHHCCTTCEEE
T ss_pred ----------------------------------HHhcCchhh--------HHHhHhhhHHHHHHHHHHHHhccCCcEEE
Confidence 111222111 1235888888888888888 99999999
Q ss_pred EeCCCCCCCHHHHHHH-HHHHHHHHh-CCCEEEEEecCCchHHHhccCeEEEEeCCeEEEecChhhH
Q 007554 218 LDEPTSGLDSAAAFFV-TQTLRCLSR-DGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAA 282 (599)
Q Consensus 218 lDEPtsgLD~~~~~~i-~~~L~~l~~-~g~tvi~~~H~p~~~i~~~~D~v~~L~~G~iv~~G~~~~~ 282 (599)
|||||+|||+.....+ ...++.+++ .|.++|++||+. ++..++|++..+.+|++...++.+++
T Consensus 747 LDEp~~GlD~~~~~~i~~~il~~l~~~~g~~vl~aTH~~--el~~lad~~~~v~ng~v~~~~~~~~l 811 (934)
T 3thx_A 747 IDELGRGTSTYDGFGLAWAISEYIATKIGAFCMFATHFH--ELTALANQIPTVNNLHVTALTTEETL 811 (934)
T ss_dssp EESCSCSSCHHHHHHHHHHHHHHHHHTTCCEEEEEESCG--GGGGGGGTCTTEEEEEEEEEEETTEE
T ss_pred EeCCCCCCCHHHHHHHHHHHHHHHHhcCCCEEEEEcCcH--HHHHHhcccceeEeeEEEEEecCCcE
Confidence 9999999999999888 666778876 489999999994 56789999999999999988876653
No 93
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=99.77 E-value=1.6e-20 Score=197.59 Aligned_cols=191 Identities=18% Similarity=0.184 Sum_probs=137.5
Q ss_pred eeEEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCC-----
Q 007554 50 ARLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTK----- 124 (599)
Q Consensus 50 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~G~sGsGKSTLl~~L~G~~~~~~~~~G~I~~~g~~~~----- 124 (599)
..++.+++++.+. .+..+|+++ +.+.+||+++|+||||||||||+++|+|..+++ .|.|.+.|++..
T Consensus 44 ~~i~~~~l~~~~~----tg~~ald~l-l~i~~Gq~~gIiG~nGaGKTTLl~~I~g~~~~~---~g~i~~~G~~~~ev~~~ 115 (347)
T 2obl_A 44 DPLLRQVIDQPFI----LGVRAIDGL-LTCGIGQRIGIFAGSGVGKSTLLGMICNGASAD---IIVLALIGERGREVNEF 115 (347)
T ss_dssp CSTTCCCCCSEEC----CSCHHHHHH-SCEETTCEEEEEECTTSSHHHHHHHHHHHSCCS---EEEEEEESCCHHHHHHH
T ss_pred CCeeecccceecC----CCCEEEEee-eeecCCCEEEEECCCCCCHHHHHHHHhcCCCCC---EEEEEEecccHHHHHHH
Confidence 3477788888773 246799999 999999999999999999999999999999885 899999986411
Q ss_pred --C-----CcCeEEEEcCCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCH
Q 007554 125 --L-----SFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISG 197 (599)
Q Consensus 125 --~-----~~~~~~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSG 197 (599)
. ..+.+.++.|.+. +..+.+.-... .....+.....+ .+... .+ ..+..+|+
T Consensus 116 i~~~~~~~~~~~v~~~~~~~~-----~~~~r~~~~~~------------~~~~ae~~~~~~-~~vl~-~l--d~~~~lS~ 174 (347)
T 2obl_A 116 LALLPQSTLSKCVLVVTTSDR-----PALERMKAAFT------------ATTIAEYFRDQG-KNVLL-MM--DSVTRYAR 174 (347)
T ss_dssp HTTSCHHHHTTEEEEEECTTS-----CHHHHHHHHHH------------HHHHHHHHHTTT-CEEEE-EE--ETHHHHHH
T ss_pred HHhhhhhhhhceEEEEECCCC-----CHHHHHHHHHH------------HHHHHHHHHhcc-ccHHH-HH--hhHHHHHH
Confidence 0 1234677777532 23332221100 000111111111 11110 00 13456999
Q ss_pred HHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh--CCC-----EEEEEecCCchHHHhccCeEEEEeC
Q 007554 198 GERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSR--DGR-----TVIASIHQPSSEVFELFDRLYLLSG 270 (599)
Q Consensus 198 GerqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~L~~l~~--~g~-----tvi~~~H~p~~~i~~~~D~v~~L~~ 270 (599)
|| ||+++| +.+|++ |+|||+.....+.++++++.+ +|. ||++++||.. ..+||+++.|.+
T Consensus 175 g~-r~v~la---l~~p~~------t~Gldp~~~~~l~~ller~~~~~~GsiT~~~tVl~~thdl~---~~i~d~v~~i~d 241 (347)
T 2obl_A 175 AA-RDVGLA---SGEPDV------RGGFPPSVFSSLPKLLERAGPAPKGSITAIYTVLLESDNVN---DPIGDEVRSILD 241 (347)
T ss_dssp HH-HHHHHH---TTCCCC------BTTBCHHHHHHHHHHHTTCEECSSSEEEEEEEEECCSSCCC---CHHHHHHHHHCS
T ss_pred HH-HHHHHH---cCCCCc------ccCCCHHHHHHHHHHHHHHhCCCCCCeeeEEEEEEeCCCCC---ChhhhheEEeeC
Confidence 99 899999 688877 999999999999999999974 477 9999999975 567999999999
Q ss_pred CeEEEecChhhH
Q 007554 271 GKTVYFGETSAA 282 (599)
Q Consensus 271 G~iv~~G~~~~~ 282 (599)
|+++..|+.++.
T Consensus 242 G~Ivl~~~l~~~ 253 (347)
T 2obl_A 242 GHIVLTRELAEE 253 (347)
T ss_dssp EEEEBCHHHHTT
T ss_pred cEEEEeCCHHHc
Confidence 999999877643
No 94
>1f2t_B RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_B* 1us8_B*
Probab=99.76 E-value=1.2e-18 Score=161.13 Aligned_cols=82 Identities=28% Similarity=0.314 Sum_probs=73.5
Q ss_pred cccCCCCHHHHHHHHHH------HHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhccC
Q 007554 190 WHLRGISGGERRRVSIA------LEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFD 263 (599)
Q Consensus 190 ~~~~~LSGGerqRv~ia------~aL~~~p~illlDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~p~~~i~~~~D 263 (599)
..+..||||||||++|| ++|+.+|+++||||||+|||+.++..+.+.|+++.++|+|||++||++ ++.+.||
T Consensus 53 ~~~~~LSgGe~qrv~lA~~Lalaral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tiiivsH~~--~~~~~~d 130 (148)
T 1f2t_B 53 RPLTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQVILVSHDE--ELKDAAD 130 (148)
T ss_dssp ECGGGSCHHHHHHHHHHHHHHHHHHHHSSCSEEEEESCSCTTCHHHHHHHHHHHHHTGGGSSEEEEEESCG--GGGGGCS
T ss_pred CChhHCCHHHHHHHHHHhhhHHHHHHcCCCCEEEEECCCccCCHHHHHHHHHHHHHHHccCCEEEEEEChH--HHHHhCC
Confidence 45678999999999876 899999999999999999999999999999999977789999999996 4678999
Q ss_pred eEEEE--eCCeE
Q 007554 264 RLYLL--SGGKT 273 (599)
Q Consensus 264 ~v~~L--~~G~i 273 (599)
++++| .+|..
T Consensus 131 ~ii~l~~~~g~s 142 (148)
T 1f2t_B 131 HVIRISLENGSS 142 (148)
T ss_dssp EEEEEEEETTEE
T ss_pred EEEEEEcCCCeE
Confidence 99999 45643
No 95
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=99.75 E-value=3.9e-20 Score=205.49 Aligned_cols=167 Identities=14% Similarity=0.062 Sum_probs=117.0
Q ss_pred ccceeeceEE-EEeCCeEEEEECCCCCcHHHHHHH--HHcCCCCCCCceeEEEECCEeCCC----CcCeEEEEcCCCCCC
Q 007554 68 THNVLEGLTG-YAEPGTLTALMGPSGSGKSTLLDA--LSSRLASNAFLSGTILLNGHKTKL----SFGTAAYVTQDDNLI 140 (599)
Q Consensus 68 ~~~iL~~vs~-~i~~Ge~~aI~G~sGsGKSTLl~~--L~G~~~~~~~~~G~I~~~g~~~~~----~~~~~~yv~Q~~~l~ 140 (599)
...+|++||+ .+++|++++|+||||||||||+++ ++|+.+|+ +|.|+++|++... ..+.+||++|+....
T Consensus 24 g~~~Ld~i~~G~i~~Ge~~~l~G~nGsGKSTL~~~~ll~Gl~~~~---~g~i~v~g~~~~~~~~~~~~~~g~~~q~~~~~ 100 (525)
T 1tf7_A 24 MIEGFDDISHGGLPIGRSTLVSGTSGTGKTLFSIQFLYNGIIEFD---EPGVFVTFEETPQDIIKNARSFGWDLAKLVDE 100 (525)
T ss_dssp CCTTHHHHTTSSEETTSEEEEEESTTSSHHHHHHHHHHHHHHHHC---CCEEEEESSSCHHHHHHHHGGGTCCHHHHHHT
T ss_pred CchhHHHhcCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHHHHhCC---CCEEEEEEeCCHHHHHHHHHHcCCChHHhhcc
Confidence 4679999999 999999999999999999999999 78998765 8999999976311 124578898875421
Q ss_pred CCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHHHHHHHHHhhCCCEEEEeC
Q 007554 141 GTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDE 220 (599)
Q Consensus 141 ~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSGGerqRv~ia~aL~~~p~illlDE 220 (599)
++ +.+ ..... .. ...++++.++|.+..+.. ++.|||| +|+++++||
T Consensus 101 ~~------l~~---~~~~~--~~-----~~~~~l~~~~l~~~~~~~-----~~~LS~g-------------~~~~lilDe 146 (525)
T 1tf7_A 101 GK------LFI---LDASP--DP-----EGQEVVGGFDLSALIERI-----NYAIQKY-------------RARRVSIDS 146 (525)
T ss_dssp TS------EEE---EECCC--CS-----SCCSCCSSHHHHHHHHHH-----HHHHHHH-------------TCSEEEEEC
T ss_pred Cc------EEE---EecCc--cc-----chhhhhcccCHHHHHHHH-----HHHHHHc-------------CCCEEEECC
Confidence 11 100 00000 00 001111222222222221 2335555 578999999
Q ss_pred CCC-----CCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchH--------HHhccCeEEEEeCC
Q 007554 221 PTS-----GLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSE--------VFELFDRLYLLSGG 271 (599)
Q Consensus 221 Pts-----gLD~~~~~~i~~~L~~l~~~g~tvi~~~H~p~~~--------i~~~~D~v~~L~~G 271 (599)
||+ +||+..+..+.++++++++.|+|||+++|++... ...+||+|++|++|
T Consensus 147 ~t~~~~~~~lD~~~~~~l~~ll~~l~~~g~tvl~itH~~~~~~~~~~~~i~~~laD~vi~L~~~ 210 (525)
T 1tf7_A 147 VTSVFQQYDASSVVRRELFRLVARLKQIGATTVMTTERIEEYGPIARYGVEEFVSDNVVILRNV 210 (525)
T ss_dssp STTTSTTTCCHHHHHHHHHHHHHHHHHHTCEEEEEEECSSSSSCSSTTSCHHHHCSEEEEEEEE
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHHHHHCCCEEEEEecCCCCccccccccceeeeeeEEEEEEEE
Confidence 998 5699999999999999988899999999997532 34569999999984
No 96
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=99.75 E-value=5.8e-20 Score=183.05 Aligned_cols=166 Identities=14% Similarity=0.104 Sum_probs=104.0
Q ss_pred eece-EEEEeCCeEEEEECCCCCcHHHHHHHHH--cCCCCCCCceeEEEECCEeCCC----CcCeEEEEcCCCCCCCCCC
Q 007554 72 LEGL-TGYAEPGTLTALMGPSGSGKSTLLDALS--SRLASNAFLSGTILLNGHKTKL----SFGTAAYVTQDDNLIGTLT 144 (599)
Q Consensus 72 L~~v-s~~i~~Ge~~aI~G~sGsGKSTLl~~L~--G~~~~~~~~~G~I~~~g~~~~~----~~~~~~yv~Q~~~l~~~lT 144 (599)
|+++ .+-+++|++++|+||||||||||+++|+ |...++ +|.+.+++..... ..+.++|++|+....+.++
T Consensus 19 lD~~l~Ggi~~G~~~~l~GpnGsGKSTLl~~i~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 95 (251)
T 2ehv_A 19 FDELIEGGFPEGTTVLLTGGTGTGKTTFAAQFIYKGAEEYG---EPGVFVTLEERARDLRREMASFGWDFEKYEKEGKIA 95 (251)
T ss_dssp TGGGTTTSEETTCEEEEECCTTSSHHHHHHHHHHHHHHHHC---CCEEEEESSSCHHHHHHHHHTTTCCHHHHHHTTSEE
T ss_pred HHHHhcCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhCC---CeEEEEEccCCHHHHHHHHHHcCCChHHHhhcCCEE
Confidence 4443 2378999999999999999999999999 653333 5667776643210 1123455655543333344
Q ss_pred HHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCC
Q 007554 145 VRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSG 224 (599)
Q Consensus 145 V~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSGGerqRv~ia~aL~~~p~illlDEPtsg 224 (599)
+.++....... ....... .....+.++..+......-..+|+++++||||++
T Consensus 96 ~~~~~~~~~~~----------~~~~~~~------------------~~~~~~~~~~~~~~~~~l~~~~p~~lilDep~~~ 147 (251)
T 2ehv_A 96 IVDGVSSVVGL----------PSEEKFV------------------LEDRFNVDNFLRYIYRVVKAINAKRLVIDSIPSI 147 (251)
T ss_dssp EEC-----------------------------------------------CCHHHHHHHHHHHHHHTTCSEEEEECHHHH
T ss_pred EEEcccccccc----------cccccee------------------ccCcccHHHHHHHHHHHHHhhCCCEEEEccHHHH
Confidence 43332211000 0000000 0011334555544444445689999999999999
Q ss_pred CC-----HHHHHHHHHHHHHHHhCCCEEEEEecCCchHH---------Hhcc-CeEEEEe
Q 007554 225 LD-----SAAAFFVTQTLRCLSRDGRTVIASIHQPSSEV---------FELF-DRLYLLS 269 (599)
Q Consensus 225 LD-----~~~~~~i~~~L~~l~~~g~tvi~~~H~p~~~i---------~~~~-D~v~~L~ 269 (599)
|| +..+..+.++++.++++|+|||+++|++. ++ ..+| |++++|+
T Consensus 148 ld~~~d~~~~~~~l~~l~~~l~~~g~tii~vtH~~~-~~~~~~~~~~i~~~~aD~vi~l~ 206 (251)
T 2ehv_A 148 ALRLEEERKIREVLLKLNTILLEMGVTTILTTEAPD-PQHGKLSRYGIEEFIARGVIVLD 206 (251)
T ss_dssp HHHSSSGGGHHHHHHHHHHHHHHHCCEEEEEECCC-----CCSSSSSCGGGGCSEEEEEE
T ss_pred HhhcCCHHHHHHHHHHHHHHHHHCCCeEEEEECCCC-CCcccccccChhhEeeeEEEEEe
Confidence 98 67777799999999888999999999964 44 5788 9999996
No 97
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=99.74 E-value=3e-19 Score=180.69 Aligned_cols=133 Identities=20% Similarity=0.287 Sum_probs=99.2
Q ss_pred ceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCcCeEEEEcCCCCCCCCCCHHHHH
Q 007554 70 NVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLSFGTAAYVTQDDNLIGTLTVRETI 149 (599)
Q Consensus 70 ~iL~~vs~~i~~Ge~~aI~G~sGsGKSTLl~~L~G~~~~~~~~~G~I~~~g~~~~~~~~~~~yv~Q~~~l~~~lTV~e~l 149 (599)
.+|+++| +++|++++|+||||||||||+++|+|.+++. .+|+|.++|.+.. |++|+..-+
T Consensus 15 ~vl~~i~--i~~g~~v~i~Gp~GsGKSTll~~l~g~~~~~--~~G~I~~~g~~i~-------~~~~~~~~~--------- 74 (261)
T 2eyu_A 15 DKVLELC--HRKMGLILVTGPTGSGKSTTIASMIDYINQT--KSYHIITIEDPIE-------YVFKHKKSI--------- 74 (261)
T ss_dssp THHHHGG--GCSSEEEEEECSTTCSHHHHHHHHHHHHHHH--CCCEEEEEESSCC-------SCCCCSSSE---------
T ss_pred HHHHHHh--hCCCCEEEEECCCCccHHHHHHHHHHhCCCC--CCCEEEEcCCcce-------eecCCccee---------
Confidence 4899999 9999999999999999999999999998762 1799999886542 333321100
Q ss_pred HHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHH
Q 007554 150 SYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAA 229 (599)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSGGerqRv~ia~aL~~~p~illlDEPtsgLD~~~ 229 (599)
. + . ..+|+.. ..+ |++||++|..+|+++++|||| |+.+
T Consensus 75 -----v--~----q-----------~~~gl~~-----------~~l------~~~la~aL~~~p~illlDEp~---D~~~ 112 (261)
T 2eyu_A 75 -----V--N----Q-----------REVGEDT-----------KSF------ADALRAALREDPDVIFVGEMR---DLET 112 (261)
T ss_dssp -----E--E----E-----------EEBTTTB-----------SCH------HHHHHHHHHHCCSEEEESCCC---SHHH
T ss_pred -----e--e----H-----------HHhCCCH-----------HHH------HHHHHHHHhhCCCEEEeCCCC---CHHH
Confidence 0 0 0 0123211 122 899999999999999999999 9988
Q ss_pred HHHHHHHHHHHHhCCCEEEEEecCCchHHHhccCeEEEEeC
Q 007554 230 AFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSG 270 (599)
Q Consensus 230 ~~~i~~~L~~l~~~g~tvi~~~H~p~~~i~~~~D~v~~L~~ 270 (599)
...++ +. ++.|.+|++++|++. +...+|+++.|..
T Consensus 113 ~~~~l---~~-~~~g~~vl~t~H~~~--~~~~~dri~~l~~ 147 (261)
T 2eyu_A 113 VETAL---RA-AETGHLVFGTLHTNT--AIDTIHRIVDIFP 147 (261)
T ss_dssp HHHHH---HH-HHTTCEEEEEECCSS--HHHHHHHHHHTSC
T ss_pred HHHHH---HH-HccCCEEEEEeCcch--HHHHHHHHhhhcC
Confidence 76544 33 356899999999964 5788999988854
No 98
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=99.73 E-value=1.6e-19 Score=177.53 Aligned_cols=154 Identities=21% Similarity=0.163 Sum_probs=94.7
Q ss_pred EEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCC----CceeEEEECCEeCCCCcCeEEEEcCCCCCCCCCCHHHHHHHH
Q 007554 77 GYAEPGTLTALMGPSGSGKSTLLDALSSRLASNA----FLSGTILLNGHKTKLSFGTAAYVTQDDNLIGTLTVRETISYS 152 (599)
Q Consensus 77 ~~i~~Ge~~aI~G~sGsGKSTLl~~L~G~~~~~~----~~~G~I~~~g~~~~~~~~~~~yv~Q~~~l~~~lTV~e~l~~~ 152 (599)
+-+++|++++|+||||||||||+++|+|...+.. ...|.|++++.... ..+.+++++|+..+++. |+.||+.+
T Consensus 20 ggi~~G~~~~l~G~nGsGKSTll~~l~g~~~~~~~~g~~~~~~i~~~~~~~~-~~~~i~~~~~~~~~~~~-~~~~~~~~- 96 (231)
T 4a74_A 20 GGIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTF-RPERIREIAQNRGLDPD-EVLKHIYV- 96 (231)
T ss_dssp SSEESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCC-CHHHHHHHHHHTTSCHH-HHHHTEEE-
T ss_pred CCCCCCcEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCEEEEEECCCCC-CHHHHHHHHHHcCCCHH-HHhhcEEE-
Confidence 4799999999999999999999999999544320 01345555543210 01122233332222221 22222111
Q ss_pred hhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHH-HHHHHHHHHHhh-------CCCEEEEeCCCCC
Q 007554 153 ARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGE-RRRVSIALEILM-------RPRLLFLDEPTSG 224 (599)
Q Consensus 153 ~~~~~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSGGe-rqRv~ia~aL~~-------~p~illlDEPtsg 224 (599)
....++++ ++++..+++++. +|+++++||||++
T Consensus 97 ---------------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~llilDe~~~~ 137 (231)
T 4a74_A 97 ---------------------------------------ARAFNSNHQMLLVQQAEDKIKELLNTDRPVKLLIVDSLTSH 137 (231)
T ss_dssp ---------------------------------------EECCSHHHHHHHHHHHHHHHHHHTTSSSCEEEEEEETSSHH
T ss_pred ---------------------------------------EecCChHHHHHHHHHHHHHHHHhcccCCceeEEEECChHHH
Confidence 11233333 333566666665 9999999999999
Q ss_pred CCHH-------H-----HHHHHHHHHHHHh-CCCEEEEEecCCc---hHHHhccCeEEEEeCCe
Q 007554 225 LDSA-------A-----AFFVTQTLRCLSR-DGRTVIASIHQPS---SEVFELFDRLYLLSGGK 272 (599)
Q Consensus 225 LD~~-------~-----~~~i~~~L~~l~~-~g~tvi~~~H~p~---~~i~~~~D~v~~L~~G~ 272 (599)
+|+. . ..++++.|+++++ .|.|||+++|... ..+...+|+++.|++|+
T Consensus 138 l~~~~~~~~~~~~r~~~~~~~~~~l~~~~~~~g~tvi~vtH~~~~~g~~~~~~~d~~l~l~~~~ 201 (231)
T 4a74_A 138 FRSEYIGRGALAERQQKLAKHLADLHRLANLYDIAVFVTNQVQANGGHILAHSATLRVYLRKGK 201 (231)
T ss_dssp HHHHSCSTTHHHHHHHHHHHHHHHHHHHHHHHTCEEEEEEECC---------CCSEEEEEEECT
T ss_pred hccccCCCcchhHHHHHHHHHHHHHHHHHHHCCCeEEEEeecccCcchhhHhhceEEEEEEecC
Confidence 9984 2 2378888888865 5999999999532 23778899999998753
No 99
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=99.72 E-value=9.9e-21 Score=184.57 Aligned_cols=145 Identities=19% Similarity=0.184 Sum_probs=112.9
Q ss_pred EeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCcCeEEEEcCCCCCC--CCCCHHHHHHHHhhcc
Q 007554 79 AEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLSFGTAAYVTQDDNLI--GTLTVRETISYSARLR 156 (599)
Q Consensus 79 i~~Ge~~aI~G~sGsGKSTLl~~L~G~~~~~~~~~G~I~~~g~~~~~~~~~~~yv~Q~~~l~--~~lTV~e~l~~~~~~~ 156 (599)
.++|++++|+||||||||||+++|+|++.+ .++|++|++.++ ..+|++++..+...
T Consensus 3 ~~~~~~i~i~G~~GsGKSTl~~~l~~~~~~--------------------~i~~v~~d~~~~~~~~~~~~~~~~~~~~-- 60 (211)
T 3asz_A 3 APKPFVIGIAGGTASGKTTLAQALARTLGE--------------------RVALLPMDHYYKDLGHLPLEERLRVNYD-- 60 (211)
T ss_dssp --CCEEEEEEESTTSSHHHHHHHHHHHHGG--------------------GEEEEEGGGCBCCCTTSCHHHHHHSCTT--
T ss_pred CCCcEEEEEECCCCCCHHHHHHHHHHHhCC--------------------CeEEEecCccccCcccccHHHhcCCCCC--
Confidence 478999999999999999999999997642 478999998776 56899988765321
Q ss_pred CCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHH----HHHHHHHHHHhhCCCEEEEeCCCCC-------C
Q 007554 157 LPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGE----RRRVSIALEILMRPRLLFLDEPTSG-------L 225 (599)
Q Consensus 157 ~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSGGe----rqRv~ia~aL~~~p~illlDEPtsg-------L 225 (599)
.+. ....+++.+.++.+++.+..+.. +..+|+|| +||++++++++.+|.++++||||++ |
T Consensus 61 ~~~----~~~~~~~~~~l~~~~~~~~~~~~-----~~~~s~g~~~~~~~~~~~~~~li~~~~ll~~de~~~~~~d~~i~l 131 (211)
T 3asz_A 61 HPD----AFDLALYLEHAQALLRGLPVEMP-----VYDFRAYTRSPRRTPVRPAPVVILEGILVLYPKELRDLMDLKVFV 131 (211)
T ss_dssp SGG----GBCHHHHHHHHHHHHTTCCEEEC-----CEETTTTEECSSCEEECCCSEEEEESTTTTSSHHHHTTCSEEEEE
T ss_pred Chh----hhhHHHHHHHHHHHHcCCCcCCC-----cccCcccCCCCCeEEeCCCcEEEEeehhhccCHHHHHhcCEEEEE
Confidence 111 11234566677777776655443 34689996 4788999999999999999999999 9
Q ss_pred CHHHHHHHHHHHHHH-HhCCCEEEEEecCC
Q 007554 226 DSAAAFFVTQTLRCL-SRDGRTVIASIHQP 254 (599)
Q Consensus 226 D~~~~~~i~~~L~~l-~~~g~tvi~~~H~p 254 (599)
|+.....+.+.+++. .++|+|++.++|+.
T Consensus 132 d~~~~~~~~r~l~r~~~~~g~t~~~~~~~~ 161 (211)
T 3asz_A 132 DADADERFIRRLKRDVLERGRSLEGVVAQY 161 (211)
T ss_dssp ECCHHHHHHHHHHHHHHHSCCCHHHHHHHH
T ss_pred eCCHHHHHHHHHHHHHHHhCCCHHHHHHHH
Confidence 999999999999876 45689999999974
No 100
>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B*
Probab=99.72 E-value=7.5e-18 Score=196.14 Aligned_cols=154 Identities=15% Similarity=0.128 Sum_probs=103.6
Q ss_pred ccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCcCeEEEEcCCCCCCCCCCHHH
Q 007554 68 THNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLSFGTAAYVTQDDNLIGTLTVRE 147 (599)
Q Consensus 68 ~~~iL~~vs~~i~~Ge~~aI~G~sGsGKSTLl~~L~G~~~~~~~~~G~I~~~g~~~~~~~~~~~yv~Q~~~l~~~lTV~e 147 (599)
++.|++|+|+++++|++++|+||||||||||||++++..... ..|. .... .-+.++.-+.++..+.+.+
T Consensus 659 ~~~V~ndvsl~~~~g~i~~ItGPNGaGKSTlLr~i~~i~~~a--q~g~------~vpa---~~~~i~~~d~i~~~ig~~d 727 (918)
T 3thx_B 659 DQYVPNNTDLSEDSERVMIITGPNMGGKSSYIKQVALITIMA--QIGS------YVPA---EEATIGIVDGIFTRMGAAD 727 (918)
T ss_dssp SSSCCEEEEECTTSCCEEEEESCCCHHHHHHHHHHHHHHHHH--HHTC------CBSS---SEEEEECCSEEEEEC----
T ss_pred CceecccccccCCCCeEEEEECCCCCchHHHHHHHHHHHHHh--hcCc------cccc---hhhhhhHHHHHHHhCChHH
Confidence 467999999999999999999999999999999998643110 0110 0000 0011111111222211111
Q ss_pred HHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCH
Q 007554 148 TISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDS 227 (599)
Q Consensus 148 ~l~~~~~~~~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSGGerqRv~ia~aL~~~p~illlDEPtsgLD~ 227 (599)
+ .+. ..+.+|+|++|++.|+++ +++|+++||||||+|||+
T Consensus 728 ~----------------------------------l~~-----~~stfs~em~~~~~il~~-a~~p~LlLLDEP~~GlD~ 767 (918)
T 3thx_B 728 N----------------------------------IYK-----GRSTFMEELTDTAEIIRK-ATSQSLVILDELGRGTST 767 (918)
T ss_dssp ---------------------------------------------CCHHHHHHHHHHHHHH-CCTTCEEEEESTTTTSCH
T ss_pred H----------------------------------HHH-----hHHHhhHHHHHHHHHHHh-ccCCCEEEEeCCCCCCCH
Confidence 1 111 224589999999999998 899999999999999999
Q ss_pred HHHHHHH-HHHHHHHh-CCCEEEEEecCCchHHHhccCeEEE-EeCCeEE
Q 007554 228 AAAFFVT-QTLRCLSR-DGRTVIASIHQPSSEVFELFDRLYL-LSGGKTV 274 (599)
Q Consensus 228 ~~~~~i~-~~L~~l~~-~g~tvi~~~H~p~~~i~~~~D~v~~-L~~G~iv 274 (599)
.....+. ..++.+++ .|.|+|++||++ ++.+++|+.-- +.++++.
T Consensus 768 ~~~~~i~~~il~~L~~~~g~tvl~vTH~~--el~~l~~~~~~~v~n~~~~ 815 (918)
T 3thx_B 768 HDGIAIAYATLEYFIRDVKSLTLFVTHYP--PVCELEKNYSHQVGNYHMG 815 (918)
T ss_dssp HHHHHHHHHHHHHHHHTTCCEEEEECSCG--GGGGHHHHTTTTEEEEEEE
T ss_pred HHHHHHHHHHHHHHHHhcCCeEEEEeCcH--HHHHHHhhcccceEEEEEE
Confidence 9999998 77778865 699999999995 35566665421 3344443
No 101
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=99.71 E-value=1.5e-19 Score=186.83 Aligned_cols=162 Identities=19% Similarity=0.193 Sum_probs=86.3
Q ss_pred EeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcC-CCCCCCceeEEEECCEeCCC--CcCeEE
Q 007554 55 KDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSR-LASNAFLSGTILLNGHKTKL--SFGTAA 131 (599)
Q Consensus 55 ~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~G~sGsGKSTLl~~L~G~-~~~~~~~~G~I~~~g~~~~~--~~~~~~ 131 (599)
.||++.+ +++.+++++++++ +|+||||+|||||++.|.|. ..+. +| |.++|.+... ..+.++
T Consensus 2 ~~l~~~~-----~~~~~l~~~~~~I------~lvG~nG~GKSTLl~~L~g~~~~~~---~g-i~~~g~~~~~t~~~~~~~ 66 (301)
T 2qnr_A 2 SNLPNQV-----HRKSVKKGFEFTL------MVVGESGLGKSTLINSLFLTDLYPE---RV-ISGAAEKIERTVQIEAST 66 (301)
T ss_dssp ---------------------CEEE------EEEEETTSSHHHHHHHHHC----------------------------CE
T ss_pred CCCcceE-----CCEEEEcCCCEEE------EEECCCCCCHHHHHHHHhCCCccCC---CC-cccCCcccCCcceEeeEE
Confidence 3566666 3577999999988 99999999999999999997 5553 78 8888865321 234578
Q ss_pred EEcCCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHHHHHHHHHhh
Q 007554 132 YVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILM 211 (599)
Q Consensus 132 yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSGGerqRv~ia~aL~~ 211 (599)
+++|++.....+||.|+..++..... .+..+..++.+. +..+. +.+++|||||||+.+||+++
T Consensus 67 ~~~q~~~~~~~ltv~Dt~g~~~~~~~-----~e~~~~l~~~l~------~~~~~-----~~~~~sgg~rqrv~~ara~~- 129 (301)
T 2qnr_A 67 VEIEERGVKLRLTVVDTPGYGDAINC-----RDCFKTIISYID------EQFER-----YLHDESGLNRRHIIDNRVHC- 129 (301)
T ss_dssp EEEC---CCEEEEEEEEC----------------CTTHHHHHH------HHHHH-----HHHHHTSSCCTTCCCCCCCE-
T ss_pred EEecCCCcccCcchhhhhhhhhhcCc-----HHHHHHHHHHHH------HHHHH-----HHHHhCHHhhhhhhhhhhhh-
Confidence 99999888888999999887643210 000011112111 11233 34579999999999988875
Q ss_pred CCCEEEEeCCCC-CCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCc
Q 007554 212 RPRLLFLDEPTS-GLDSAAAFFVTQTLRCLSRD-GRTVIASIHQPS 255 (599)
Q Consensus 212 ~p~illlDEPts-gLD~~~~~~i~~~L~~l~~~-g~tvi~~~H~p~ 255 (599)
++++||||+ |||+... +.++++.++ +.++|++.||..
T Consensus 130 ---ll~ldePt~~~Ld~~~~----~~l~~l~~~~~iilV~~K~Dl~ 168 (301)
T 2qnr_A 130 ---CFYFISPFGHGLKPLDV----AFMKAIHNKVNIVPVIAKADTL 168 (301)
T ss_dssp ---EEEEECSSSSSCCHHHH----HHHHHHTTTSCEEEEECCGGGS
T ss_pred ---eeeeecCcccCCCHHHH----HHHHHHHhcCCEEEEEEeCCCC
Confidence 999999998 5999873 566666543 788999999954
No 102
>1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A*
Probab=99.70 E-value=1.8e-18 Score=198.41 Aligned_cols=133 Identities=23% Similarity=0.201 Sum_probs=100.4
Q ss_pred ccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCC-CCCCceeEEEECCEeCCCCcCeEEEEcCCCCCCCCCCHH
Q 007554 68 THNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLA-SNAFLSGTILLNGHKTKLSFGTAAYVTQDDNLIGTLTVR 146 (599)
Q Consensus 68 ~~~iL~~vs~~i~~Ge~~aI~G~sGsGKSTLl~~L~G~~~-~~~~~~G~I~~~g~~~~~~~~~~~yv~Q~~~l~~~lTV~ 146 (599)
++.+++|+|++ |++++|+||||||||||||+|+|+.. +. .|.+. + .....+++++| +++.+++.
T Consensus 565 ~~~vl~disl~---g~i~~I~GpNGsGKSTlLr~iagl~~~~~---~G~~v----p--a~~~~i~~v~~---i~~~~~~~ 629 (765)
T 1ewq_A 565 TEFVPNDLEMA---HELVLITGPNMAGKSTFLRQTALIALLAQ---VGSFV----P--AEEAHLPLFDG---IYTRIGAS 629 (765)
T ss_dssp SCCCCEEEEES---SCEEEEESCSSSSHHHHHHHHHHHHHHHT---TTCCB----S--SSEEEECCCSE---EEEECCC-
T ss_pred CceEeeeccCC---CcEEEEECCCCCChHHHHHHHHhhhhhcc---cCcee----e--hhccceeeHHH---hhccCCHH
Confidence 46799999998 99999999999999999999999853 32 45432 1 11234677766 45555655
Q ss_pred HHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHHHHHHHHH--hhCCCEEEEeCC---
Q 007554 147 ETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEI--LMRPRLLFLDEP--- 221 (599)
Q Consensus 147 e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSGGerqRv~ia~aL--~~~p~illlDEP--- 221 (599)
||+. .++|+|+++++.+++++ +++|+++|||||
T Consensus 630 d~l~------------------------------------------~g~S~~~~e~~~la~il~~a~~p~LlLLDEpgrG 667 (765)
T 1ewq_A 630 DDLA------------------------------------------GGKSTFMVEMEEVALILKEATENSLVLLDEVGRG 667 (765)
T ss_dssp -----------------------------------------------CCSHHHHHHHHHHHHHHHCCTTEEEEEESTTTT
T ss_pred HHHH------------------------------------------hcccHHHHHHHHHHHHHHhccCCCEEEEECCCCC
Confidence 5432 13789999999999999 999999999999
Q ss_pred CCCCCHHHH-HHHHHHHHHHHhCCCEEEEEecCCchHHHhcc
Q 007554 222 TSGLDSAAA-FFVTQTLRCLSRDGRTVIASIHQPSSEVFELF 262 (599)
Q Consensus 222 tsgLD~~~~-~~i~~~L~~l~~~g~tvi~~~H~p~~~i~~~~ 262 (599)
|++||..+. ..+++.|++ .|.|+|++||++ +..+++
T Consensus 668 Ts~lD~~~~~~~i~~~L~~---~g~~vl~~TH~~--~l~~~~ 704 (765)
T 1ewq_A 668 TSSLDGVAIATAVAEALHE---RRAYTLFATHYF--ELTALG 704 (765)
T ss_dssp SCHHHHHHHHHHHHHHHHH---HTCEEEEECCCH--HHHTCC
T ss_pred CCCcCHHHHHHHHHHHHHh---CCCEEEEEeCCH--HHHHhh
Confidence 999998875 578888766 478999999994 345554
No 103
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=99.69 E-value=1.5e-18 Score=179.29 Aligned_cols=146 Identities=12% Similarity=0.083 Sum_probs=106.3
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCC-----------cCeEEEEcCCCCCCCCCCHHHHH
Q 007554 81 PGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLS-----------FGTAAYVTQDDNLIGTLTVRETI 149 (599)
Q Consensus 81 ~Ge~~aI~G~sGsGKSTLl~~L~G~~~~~~~~~G~I~~~g~~~~~~-----------~~~~~yv~Q~~~l~~~lTV~e~l 149 (599)
+|++++|+||||||||||+++|+|++++. +|+|.++|.+.... +..++||+|+..++|.+|++|++
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lagll~~~---~g~V~l~g~D~~r~~a~~ql~~~~~~~~i~~v~q~~~~~p~~~v~~~v 177 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGRYYQNL---GKKVMFCAGDTFRAAGGTQLSEWGKRLSIPVIQGPEGTDSAALAYDAV 177 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHHHTT---TCCEEEECCCCSSTTTTHHHHHHHHHHTCCEECCCTTCCHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHhc---CCEEEEEeecCCChhHHHHHHHHHHhcCceEEEeCCCCCHHHHHHHHH
Confidence 69999999999999999999999999885 89999999874211 13589999999888888999999
Q ss_pred HHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHH
Q 007554 150 SYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAA 229 (599)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSGGerqRv~ia~aL~~~p~illlDEPtsgLD~~~ 229 (599)
.++..... . ..+++..|+.+..+ +-++..++||++|||+++.+|+.++| .||+.+
T Consensus 178 ~~~~~~~~-d-----------~~llDt~G~~~~~~--------~~~~eLs~~r~~iaRal~~~P~~~lL-----vLDa~t 232 (304)
T 1rj9_A 178 QAMKARGY-D-----------LLFVDTAGRLHTKH--------NLMEELKKVKRAIAKADPEEPKEVWL-----VLDAVT 232 (304)
T ss_dssp HHHHHHTC-S-----------EEEECCCCCCTTCH--------HHHHHHHHHHHHHHHHCTTCCSEEEE-----EEETTB
T ss_pred HHHHhCCC-C-----------EEEecCCCCCCchH--------HHHHHHHHHHHHHHHhhcCCCCeEEE-----EEcHHH
Confidence 87532100 0 00112223322211 12455669999999999999994444 455555
Q ss_pred HHHHHHHHHHHHh-CCCEEEEEecCC
Q 007554 230 AFFVTQTLRCLSR-DGRTVIASIHQP 254 (599)
Q Consensus 230 ~~~i~~~L~~l~~-~g~tvi~~~H~p 254 (599)
...+++.++++.+ .|.|+|++||+.
T Consensus 233 ~~~~~~~~~~~~~~~~~t~iivTh~d 258 (304)
T 1rj9_A 233 GQNGLEQAKKFHEAVGLTGVIVTKLD 258 (304)
T ss_dssp CTHHHHHHHHHHHHHCCSEEEEECTT
T ss_pred HHHHHHHHHHHHHHcCCcEEEEECCc
Confidence 5667777777765 489999999984
No 104
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=99.68 E-value=8.8e-19 Score=184.65 Aligned_cols=166 Identities=21% Similarity=0.169 Sum_probs=101.6
Q ss_pred eeece-EEEEeCCeEEEEECCCCCcHHHHHHHHHcCC--CCCC-CceeE-EEECCEeCCCCcCeEEEEcCCCCCCCCCCH
Q 007554 71 VLEGL-TGYAEPGTLTALMGPSGSGKSTLLDALSSRL--ASNA-FLSGT-ILLNGHKTKLSFGTAAYVTQDDNLIGTLTV 145 (599)
Q Consensus 71 iL~~v-s~~i~~Ge~~aI~G~sGsGKSTLl~~L~G~~--~~~~-~~~G~-I~~~g~~~~~~~~~~~yv~Q~~~l~~~lTV 145 (599)
.|+++ ++.+++|++++|+||||||||||++.|++.. +|.. ...|+ |+++++... ..+++++++|+..+++. ++
T Consensus 119 ~LD~lL~ggi~~G~i~~I~G~~GsGKTTL~~~l~~~~~~~~~~Gg~~G~vi~i~~e~~~-~~~~i~~i~q~~~~~~~-~v 196 (349)
T 1pzn_A 119 SLDKLLGGGIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTF-RPERIREIAQNRGLDPD-EV 196 (349)
T ss_dssp HHHHHHTSSEESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEESSSCC-CHHHHHHHHHTTTCCHH-HH
T ss_pred HHHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHhccchhcCCCCCeEEEEeCCCCC-CHHHHHHHHHHcCCCHH-HH
Confidence 46665 5899999999999999999999999999986 3320 01267 788775421 12334555555433322 33
Q ss_pred HHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHHHHHHHHHh-------hCCCEEEE
Q 007554 146 RETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEIL-------MRPRLLFL 218 (599)
Q Consensus 146 ~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSGGerqRv~ia~aL~-------~~p~illl 218 (599)
.||+.+... .-|++++|++.++++++ .+|+++++
T Consensus 197 ~~ni~~~~~---------------------------------------~~~~~~~~~l~~~~~~~~~lS~G~~~~~llIl 237 (349)
T 1pzn_A 197 LKHIYVARA---------------------------------------FNSNHQMLLVQQAEDKIKELLNTDRPVKLLIV 237 (349)
T ss_dssp GGGEEEEEC---------------------------------------CSHHHHHHHHHHHHHHHHHSSSSSSCEEEEEE
T ss_pred hhCEEEEec---------------------------------------CChHHHHHHHHHHHHHHHHhccccCCCCEEEE
Confidence 333222100 01456677777777776 68999999
Q ss_pred eCCCCCCCHHH------------HHHHHHHHHHHHh-CCCEEEEEecCCchHHHhccCeEEEEeCCeEEEecC
Q 007554 219 DEPTSGLDSAA------------AFFVTQTLRCLSR-DGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGE 278 (599)
Q Consensus 219 DEPtsgLD~~~------------~~~i~~~L~~l~~-~g~tvi~~~H~p~~~i~~~~D~v~~L~~G~iv~~G~ 278 (599)
||||+++|+.. ..++++.|+++++ .|.|||+++|.. ......++.......|+++.++.
T Consensus 238 Ds~ta~ld~~~~~~~~~~~r~~~~~~~l~~L~~la~~~~~tvii~~h~~-~~~~~~~~~~~~~~~G~~l~~~~ 309 (349)
T 1pzn_A 238 DSLTSHFRSEYIGRGALAERQQKLAKHLADLHRLANLYDIAVFVTNQVQ-ARPDAFFGDPTRPIGGHILAHSA 309 (349)
T ss_dssp ETSSTTHHHHCCSTTTHHHHHHHHHHHHHHHHHHHHHTTCEEEEEEECC----------------CCCCCTTC
T ss_pred eCchHhhhhhhcccccHHHHHHHHHHHHHHHHHHHHHcCcEEEEEcccc-cccccccCCccccCCcceEeecC
Confidence 99999999852 4566777777765 589999999985 34444455555666676654443
No 105
>1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A*
Probab=99.68 E-value=6.6e-18 Score=194.86 Aligned_cols=156 Identities=11% Similarity=0.045 Sum_probs=108.1
Q ss_pred ccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCcCeEEEEcCCCCCCCCCCHHH
Q 007554 68 THNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLSFGTAAYVTQDDNLIGTLTVRE 147 (599)
Q Consensus 68 ~~~iL~~vs~~i~~Ge~~aI~G~sGsGKSTLl~~L~G~~~~~~~~~G~I~~~g~~~~~~~~~~~yv~Q~~~l~~~lTV~e 147 (599)
++.+++|+++. ++|++++|+||||||||||||+|+|..... ..| .........++++.| +++.+++.|
T Consensus 594 ~~~vlndisl~-~~g~i~~ItGpNGsGKSTlLr~iagl~~~~--q~G------~~vpa~~~~i~~~~~---i~~~~~~~d 661 (800)
T 1wb9_A 594 EPFIANPLNLS-PQRRMLIITGPNMGGKSTYMRQTALIALMA--YIG------SYVPAQKVEIGPIDR---IFTRVGAAD 661 (800)
T ss_dssp SCCCCEEEEEC-SSSCEEEEECCTTSSHHHHHHHHHHHHHHH--TTT------CCBSSSEEEECCCCE---EEEEEC---
T ss_pred Cceeeeccccc-CCCcEEEEECCCCCChHHHHHHHHHHHHHH--hcC------cccchhcccceeHHH---HHhhCCHHH
Confidence 46799999999 999999999999999999999999974221 012 111111123455544 455555555
Q ss_pred HHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCH
Q 007554 148 TISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDS 227 (599)
Q Consensus 148 ~l~~~~~~~~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSGGerqRv~ia~aL~~~p~illlDEPtsgLD~ 227 (599)
++..+ + +.+|+|++ +++.+..++++|+++|||||++|+|+
T Consensus 662 ~l~~~--------------------------~-------------stf~~e~~-~~~~il~~a~~psLlLLDEp~~Gtd~ 701 (800)
T 1wb9_A 662 DLASG--------------------------R-------------STFMVEMT-ETANILHNATEYSLVLMDEIGRGTST 701 (800)
T ss_dssp -----------------------------------------------CHHHHH-HHHHHHHHCCTTEEEEEESCCCCSSS
T ss_pred HHHhh--------------------------h-------------hhhhHHHH-HHHHHHHhccCCCEEEEECCCCCCCh
Confidence 54221 0 13566665 45555567899999999999999999
Q ss_pred HHHHHH-HHHHHHHHh-CCCEEEEEecCCchHHHhccCeEEEEeCCeEEEec
Q 007554 228 AAAFFV-TQTLRCLSR-DGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFG 277 (599)
Q Consensus 228 ~~~~~i-~~~L~~l~~-~g~tvi~~~H~p~~~i~~~~D~v~~L~~G~iv~~G 277 (599)
.....+ ...++.+.+ .|.++|++||++ ++..++|++..+.+|++.+..
T Consensus 702 ~d~~~i~~~ll~~l~~~~g~~vl~~TH~~--el~~l~d~~~~v~n~~~~~~~ 751 (800)
T 1wb9_A 702 YDGLSLAWACAENLANKIKALTLFATHYF--ELTQLPEKMEGVANVHLDALE 751 (800)
T ss_dssp SHHHHHHHHHHHHHHHTTCCEEEEECSCG--GGGGHHHHSTTEEEEEEEEEE
T ss_pred hHHHHHHHHHHHHHHhccCCeEEEEeCCH--HHHHHhhhhhceEEEEEEEEE
Confidence 888776 778888887 499999999995 356789988778888876654
No 106
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=99.67 E-value=5.5e-19 Score=199.18 Aligned_cols=191 Identities=14% Similarity=0.153 Sum_probs=116.0
Q ss_pred eEEEEeEEEEEEccCCcccceeece----------EEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECC
Q 007554 51 RLTWKDLTVMVTLSNGETHNVLEGL----------TGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNG 120 (599)
Q Consensus 51 ~l~~~~ls~~~~~~~~~~~~iL~~v----------s~~i~~Ge~~aI~G~sGsGKSTLl~~L~G~~~~~~~~~G~I~~~g 120 (599)
.++++||+..+.. ..+.+|+.+ +++++. ++|+|||||||||||++|+|+..|. .+|.|+++|
T Consensus 10 ~i~~~~l~~~~~~---~~r~ll~~id~l~~~gv~~~l~lp~---iaIvG~nGsGKSTLL~~I~Gl~~P~--~sG~vt~~g 81 (608)
T 3szr_A 10 SVAENNLCSQYEE---KVRPCIDLIDSLRALGVEQDLALPA---IAVIGDQSSGKSSVLEALSGVALPR--GSGIVTRCP 81 (608)
T ss_dssp ----------CHH---HHHHHHHHHHHHHHHSCCSSCCCCC---EECCCCTTSCHHHHHHHHHSCC---------CCCSC
T ss_pred hhhhhhhhHHHHH---HHHHHHHHHHHHHhCCCCCcccCCe---EEEECCCCChHHHHHHHHhCCCCCC--CCCeEEEcC
Confidence 4678888887732 123344333 345543 9999999999999999999998672 389999999
Q ss_pred EeC--------CCCcCeEEEEcCCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccc
Q 007554 121 HKT--------KLSFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHL 192 (599)
Q Consensus 121 ~~~--------~~~~~~~~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~ 192 (599)
.+. ....+.++|++|+..+++.+||+|++.++........ .++.
T Consensus 82 ~~i~~~~~~~~~~~~~~i~~v~Q~~~l~~~~tv~e~i~~~~~~~~~~~----------------~~~s------------ 133 (608)
T 3szr_A 82 LVLKLKKLVNEDKWRGKVSYQDYEIEISDASEVEKEINKAQNAIAGEG----------------MGIS------------ 133 (608)
T ss_dssp EEEEEEECSSSSCCEEEESCC---CCCCCHHHHHTTHHHHHHHHHCSS----------------SCCC------------
T ss_pred EEEEEecCCccccceeEEeeecccccCCCHHHHHHHHHHHHHHhcCCc----------------cccc------------
Confidence 763 1224578999999999999999999987643210000 0111
Q ss_pred CCCCHHHHHHHHHHHHHhhCCCEEEEeCC------CCCCCHHHHHHHHHHHHHHHh--CCCEEEEEecCCc------hHH
Q 007554 193 RGISGGERRRVSIALEILMRPRLLFLDEP------TSGLDSAAAFFVTQTLRCLSR--DGRTVIASIHQPS------SEV 258 (599)
Q Consensus 193 ~~LSGGerqRv~ia~aL~~~p~illlDEP------tsgLD~~~~~~i~~~L~~l~~--~g~tvi~~~H~p~------~~i 258 (599)
++++.++.+...+|+++++||| |+|||+..+.++.++++++.+ .+.++++++|+.. ..+
T Consensus 134 -------~~~i~l~i~~~~~p~LlLlDePGi~~~~t~~LD~~~~~~i~~li~~~l~~~~~iil~vvt~~~d~a~~~~l~l 206 (608)
T 3szr_A 134 -------HELITLEISSRDVPDLTLIDLPGITRVAVGNQPADIGYKIKTLIKKYIQRQETISLVVVPSNVDIATTEALSM 206 (608)
T ss_dssp -------SCCEEEEEEESSSCCEEEEECCC------CCSSCSHHHHHHHHHHHHTTSSSCCEEEEEESSSCTTTCHHHHH
T ss_pred -------hHHHHHHhcCCCCCceeEeeCCCccccccCCCCHHHHHHHHHHHHHHHhcCCCCceEEEeccchhccHHHHHH
Confidence 0111122222348999999999 999999999999999999754 3678899999854 112
Q ss_pred Hhc-----cCeEEEEeCCeEEEecChhhHHH
Q 007554 259 FEL-----FDRLYLLSGGKTVYFGETSAAFE 284 (599)
Q Consensus 259 ~~~-----~D~v~~L~~G~iv~~G~~~~~~~ 284 (599)
.+. ...|.++.++..+..|+.+++.+
T Consensus 207 a~~v~~~g~rtI~VlTK~Dlv~~g~~~~~~~ 237 (608)
T 3szr_A 207 AQEVDPEGDRTIGILTKPDLVDKGTEDKVVD 237 (608)
T ss_dssp HHHHCSSCCSEEEEEECGGGSSSSSTTCCCC
T ss_pred HHHHhhcCCceEEEecchhhcCcccHHHHHH
Confidence 222 24578888988887777654443
No 107
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=99.65 E-value=3.3e-19 Score=171.81 Aligned_cols=155 Identities=19% Similarity=0.181 Sum_probs=103.3
Q ss_pred CeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCC---CCcCeEEEEcCCCCCCCCCCHHHHHHHHhhccCC
Q 007554 82 GTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTK---LSFGTAAYVTQDDNLIGTLTVRETISYSARLRLP 158 (599)
Q Consensus 82 Ge~~aI~G~sGsGKSTLl~~L~G~~~~~~~~~G~I~~~g~~~~---~~~~~~~yv~Q~~~l~~~lTV~e~l~~~~~~~~~ 158 (599)
|++++|+||||||||||+++|+|.++ . +| |.++|.... ...+.+||++|+. ... ++++ +++..
T Consensus 1 G~~i~i~G~nG~GKTTll~~l~g~~~-~---~G-i~~~g~~~~~~~~~~~~ig~~~~~~--~g~---~~~l---~~~~~- 66 (189)
T 2i3b_A 1 ARHVFLTGPPGVGKTTLIHKASEVLK-S---SG-VPVDGFYTEEVRQGGRRIGFDVVTL--SGT---RGPL---SRVGL- 66 (189)
T ss_dssp CCCEEEESCCSSCHHHHHHHHHHHHH-H---TT-CCCEEEECCEEETTSSEEEEEEEET--TSC---EEEE---EECCC-
T ss_pred CCEEEEECCCCChHHHHHHHHHhhcc-c---CC-EEEcCEecchhHhhhceEEEEEEec--ccc---eehh---hcccc-
Confidence 78999999999999999999999986 4 78 888886542 2346789999974 111 1111 11110
Q ss_pred CCCCHHHHHHHHHHHHHHcCCCc-cccccccCcccCCCCHHHHHHH-HHHH---HHhhCCCEEEEeC--CCCCCCHHHHH
Q 007554 159 DKMPWSEKRTLVERTIIEMGLQD-CADTVIGNWHLRGISGGERRRV-SIAL---EILMRPRLLFLDE--PTSGLDSAAAF 231 (599)
Q Consensus 159 ~~~~~~~~~~~v~~~l~~l~L~~-~~~~~vg~~~~~~LSGGerqRv-~ia~---aL~~~p~illlDE--PtsgLD~~~~~ 231 (599)
+..+ ..+..+|. +...+|+|||+++ ++++ |+..+|++||+|| |+..+|.....
T Consensus 67 -------------------~~~~~~~~~~v~~-~~~~ls~~er~~~~~l~~~a~A~~~~~dvlilDE~g~~~~~~~~~~~ 126 (189)
T 2i3b_A 67 -------------------EPPPGKRECRVGQ-YVVDLTSFEQLALPVLRNADCSSGPGQRVCVIDEIGKMELFSQLFIQ 126 (189)
T ss_dssp -------------------CCCSSSCCEESSS-SEECHHHHHTTTTTTTCCCCCCCSSCCCCEEECCCSTTTTTCSHHHH
T ss_pred -------------------cCCccccccccce-EEEcchHHHHHHHHHHhhhhHhhccCCCEEEEeCCCccccccHHHHH
Confidence 0111 01224443 3456999999988 4444 5789999999999 89889987554
Q ss_pred HHHHHHHHHHhCCCEEEE----EecCCchHHHhccCeEEEEeCCeEEEec
Q 007554 232 FVTQTLRCLSRDGRTVIA----SIHQPSSEVFELFDRLYLLSGGKTVYFG 277 (599)
Q Consensus 232 ~i~~~L~~l~~~g~tvi~----~~H~p~~~i~~~~D~v~~L~~G~iv~~G 277 (599)
.+ +++.+...++|+ ++|+.+ ..+.|+|..+.+|+++.-.
T Consensus 127 ~l----~~~l~~~~~~ilgti~vsh~~~---~~~vd~i~~~~~~~i~~~~ 169 (189)
T 2i3b_A 127 AV----RQTLSTPGTIILGTIPVPKGKP---LALVEEIRNRKDVKVFNVT 169 (189)
T ss_dssp HH----HHHHHCSSCCEEEECCCCCSSC---CTTHHHHHTTCCSEEEECC
T ss_pred HH----HHHHhCCCcEEEEEeecCCCCc---hHHHHHHeecCCcEEEEeC
Confidence 44 444444455553 238853 3567788778888887643
No 108
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=99.65 E-value=1.5e-17 Score=163.23 Aligned_cols=171 Identities=14% Similarity=0.080 Sum_probs=108.5
Q ss_pred cceeeceEE-EEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCcCeEEEEcCCCCCCCCCCHHH
Q 007554 69 HNVLEGLTG-YAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLSFGTAAYVTQDDNLIGTLTVRE 147 (599)
Q Consensus 69 ~~iL~~vs~-~i~~Ge~~aI~G~sGsGKSTLl~~L~G~~~~~~~~~G~I~~~g~~~~~~~~~~~yv~Q~~~l~~~lTV~e 147 (599)
...|+++.+ .+++|++++|+||||||||||++.|++...+. .|.|.+.+ .+. +..+
T Consensus 9 ~~~Ld~~~~ggi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~---~~~v~~~~--------------~~~------~~~~ 65 (235)
T 2w0m_A 9 ILDFDKLIQGGIPQGFFIALTGEPGTGKTIFSLHFIAKGLRD---GDPCIYVT--------------TEE------SRDS 65 (235)
T ss_dssp CHHHHGGGTTSEETTCEEEEECSTTSSHHHHHHHHHHHHHHH---TCCEEEEE--------------SSS------CHHH
T ss_pred chHHHHHhcCCCcCCCEEEEEcCCCCCHHHHHHHHHHHHHHC---CCeEEEEE--------------ccc------CHHH
Confidence 457888885 89999999999999999999999999876542 45554432 211 1111
Q ss_pred HHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHHHHHHHHHhhCCC--EEEEeCCCCCC
Q 007554 148 TISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPR--LLFLDEPTSGL 225 (599)
Q Consensus 148 ~l~~~~~~~~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSGGerqRv~ia~aL~~~p~--illlDEPtsgL 225 (599)
......................++......+ ... .....|.+|.++...+.....+|+ ++++||||+++
T Consensus 66 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~llilDe~~~~~ 136 (235)
T 2w0m_A 66 IIRQAKQFNWDFEEYIEKKLIIIDALMKEKE-----DQW----SLVNLTPEELVNKVIEAKQKLGYGKARLVIDSVSALF 136 (235)
T ss_dssp HHHHHHHTTCCCGGGBTTTEEEEECCC---------CTT----BCSSCCHHHHHHHHHHHHHHHCSSCEEEEEETGGGGS
T ss_pred HHHHHHHhcchHHHHhhCCEEEEeccccccC-----cee----eecCCCHHHHHHHHHHHHHhhCCCceEEEEECchHhh
Confidence 1111101100000000000000000000000 000 112359999998888888888999 99999999888
Q ss_pred --CHHHHHHHHHHHHHHHh-CCCEEEEEecCCc-------hHHHhccCeEEEEeCC
Q 007554 226 --DSAAAFFVTQTLRCLSR-DGRTVIASIHQPS-------SEVFELFDRLYLLSGG 271 (599)
Q Consensus 226 --D~~~~~~i~~~L~~l~~-~g~tvi~~~H~p~-------~~i~~~~D~v~~L~~G 271 (599)
|+....++++.|+++++ .|.|||+++|+.. ..+.++||++++|+..
T Consensus 137 ~~d~~~~~~~~~~l~~~~~~~~~~vi~~~h~~~~~~~~~~~~~~~~~d~vi~l~~~ 192 (235)
T 2w0m_A 137 LDKPAMARKISYYLKRVLNKWNFTIYATSQYAITTSQAFGFGVEHVADGIIRFRRM 192 (235)
T ss_dssp SSCGGGHHHHHHHHHHHHHHTTEEEEEEEC-----------CHHHHCSEEEEEEEE
T ss_pred cCCHHHHHHHHHHHHHHHHhCCCeEEEEeccCcccccccccchheeeeEEEEEEEE
Confidence 99999999999999975 6899999999962 3478899999999854
No 109
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=99.65 E-value=3.1e-16 Score=159.78 Aligned_cols=150 Identities=18% Similarity=0.173 Sum_probs=104.7
Q ss_pred EEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCcCeEEEEcCCCCCCCCCCHHHHHHHHhhccC
Q 007554 78 YAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLSFGTAAYVTQDDNLIGTLTVRETISYSARLRL 157 (599)
Q Consensus 78 ~i~~Ge~~aI~G~sGsGKSTLl~~L~G~~~~~~~~~G~I~~~g~~~~~~~~~~~yv~Q~~~l~~~lTV~e~l~~~~~~~~ 157 (599)
-+++|++++|+||||||||||++.|++... .|++. .|.+... ...+.|+..++.. ..+.+.+. .+..
T Consensus 26 gl~~G~i~~i~G~~GsGKTtl~~~l~~~~~-----~g~~~-~g~~~~~-~~~v~~~~~e~~~---~~~~~r~~---~~g~ 92 (279)
T 1nlf_A 26 NMVAGTVGALVSPGGAGKSMLALQLAAQIA-----GGPDL-LEVGELP-TGPVIYLPAEDPP---TAIHHRLH---ALGA 92 (279)
T ss_dssp TEETTSEEEEEESTTSSHHHHHHHHHHHHH-----TCCCT-TCCCCCC-CCCEEEEESSSCH---HHHHHHHH---HHHT
T ss_pred CccCCCEEEEEcCCCCCHHHHHHHHHHHHh-----cCCCc-CCCccCC-CccEEEEECCCCH---HHHHHHHH---HHHh
Confidence 478999999999999999999999998553 35542 3443211 2457888776532 01222221 1111
Q ss_pred CCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCC--CCCHHHH---HH
Q 007554 158 PDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTS--GLDSAAA---FF 232 (599)
Q Consensus 158 ~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSGGerqRv~ia~aL~~~p~illlDEPts--gLD~~~~---~~ 232 (599)
.... ...+++++.+++.+..+. .+..||+||+|++ ++++.+|+++++||||+ ++|.... .+
T Consensus 93 --~~~~----~~~~~~~~~l~l~~~~~~-----~~~~ls~g~~~~i---~~l~~~~~livlDe~~~~~~~d~~~~~~~~~ 158 (279)
T 1nlf_A 93 --HLSA----EERQAVADGLLIQPLIGS-----LPNIMAPEWFDGL---KRAAEGRRLMVLDTLRRFHIEEENASGPMAQ 158 (279)
T ss_dssp --TSCH----HHHHHHHHHEEECCCTTS-----CCCTTSHHHHHHH---HHHHTTCSEEEEECGGGGCCSCTTCHHHHHH
T ss_pred --hcCh----hhhhhccCceEEeecCCC-----CcccCCHHHHHHH---HHhcCCCCEEEECCHHHhcCCCcCchHHHHH
Confidence 1111 234566778887766554 3457999998875 68889999999999999 9997544 88
Q ss_pred HHHHHHHHHh-CCCEEEEEecCC
Q 007554 233 VTQTLRCLSR-DGRTVIASIHQP 254 (599)
Q Consensus 233 i~~~L~~l~~-~g~tvi~~~H~p 254 (599)
+++.|+++++ .|.|||+++|+.
T Consensus 159 ~~~~L~~l~~~~g~tvi~i~H~~ 181 (279)
T 1nlf_A 159 VIGRMEAIAADTGCSIVFLHHAS 181 (279)
T ss_dssp HHHHHHHHHHHHCCEEEEEEEC-
T ss_pred HHHHHHHHHHHcCCEEEEEecCC
Confidence 8899999874 599999999995
No 110
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=99.63 E-value=6.2e-17 Score=170.68 Aligned_cols=127 Identities=22% Similarity=0.260 Sum_probs=88.4
Q ss_pred EEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCC-cCeEEEEcCCCCCCCCCCHHHHHHHHhhcc
Q 007554 78 YAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLS-FGTAAYVTQDDNLIGTLTVRETISYSARLR 156 (599)
Q Consensus 78 ~i~~Ge~~aI~G~sGsGKSTLl~~L~G~~~~~~~~~G~I~~~g~~~~~~-~~~~~yv~Q~~~l~~~lTV~e~l~~~~~~~ 156 (599)
...+|++++|+|||||||||||++|+|.+++. ..|.|...+.+.... ....++++|.......
T Consensus 119 ~~~~~g~i~I~GptGSGKTTlL~~l~g~~~~~--~~~~i~t~ed~~e~~~~~~~~~v~q~~~~~~~-------------- 182 (356)
T 3jvv_A 119 SDVPRGLVLVTGPTGSGKSTTLAAMLDYLNNT--KYHHILTIEDPIEFVHESKKCLVNQREVHRDT-------------- 182 (356)
T ss_dssp HHCSSEEEEEECSTTSCHHHHHHHHHHHHHHH--CCCEEEEEESSCCSCCCCSSSEEEEEEBTTTB--------------
T ss_pred HhCCCCEEEEECCCCCCHHHHHHHHHhcccCC--CCcEEEEccCcHHhhhhccccceeeeeecccc--------------
Confidence 67899999999999999999999999998763 146665433332211 1122344443211111
Q ss_pred CCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHH
Q 007554 157 LPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQT 236 (599)
Q Consensus 157 ~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSGGerqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~ 236 (599)
++-.+ +||++|..+|++|++|||| |.++. +.
T Consensus 183 --------------------------------------~~~~~----~La~aL~~~PdvillDEp~---d~e~~----~~ 213 (356)
T 3jvv_A 183 --------------------------------------LGFSE----ALRSALREDPDIILVGEMR---DLETI----RL 213 (356)
T ss_dssp --------------------------------------SCHHH----HHHHHTTSCCSEEEESCCC---SHHHH----HH
T ss_pred --------------------------------------CCHHH----HHHHHhhhCcCEEecCCCC---CHHHH----HH
Confidence 12111 9999999999999999999 66554 44
Q ss_pred HHHHHhCCCEEEEEecCCchHHHhccCeEEEEeCC
Q 007554 237 LRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGG 271 (599)
Q Consensus 237 L~~l~~~g~tvi~~~H~p~~~i~~~~D~v~~L~~G 271 (599)
+.+++..|++|++++|+.+ . ...+||++.|..|
T Consensus 214 ~~~~~~~G~~vl~t~H~~~-~-~~~~dRli~l~~~ 246 (356)
T 3jvv_A 214 ALTAAETGHLVFGTLHTTS-A-AKTIDRVVDVFPA 246 (356)
T ss_dssp HHHHHHTTCEEEEEESCSS-H-HHHHHHHHHTSCH
T ss_pred HHHHHhcCCEEEEEEccCh-H-HHHHHHHhhhcCc
Confidence 4445667999999999975 3 4889999998654
No 111
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.62 E-value=1.1e-17 Score=179.82 Aligned_cols=162 Identities=17% Similarity=0.145 Sum_probs=96.7
Q ss_pred eEEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCcCeE
Q 007554 51 RLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLSFGTA 130 (599)
Q Consensus 51 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~G~sGsGKSTLl~~L~G~~~~~~~~~G~I~~~g~~~~~~~~~~ 130 (599)
.|.++||++.+ +.+.+++++|++| +|+|+||||||||+|+|+|...+... .|.+.+++.+ ......+
T Consensus 11 ~l~~~~l~~~y-----~~~~vl~~vsf~I------~lvG~sGaGKSTLln~L~g~~~~~~~-~~~~~~~~~~-t~~~~~i 77 (418)
T 2qag_C 11 YVGFANLPNQV-----YRKSVKRGFEFTL------MVVGESGLGKSTLINSLFLTDLYSPE-YPGPSHRIKK-TVQVEQS 77 (418)
T ss_dssp ----CCCCCCT-----TTTTCC-CCCEEE------EEECCTTSSHHHHHHHHTTCCCCCCC-CCSCC------CCEEEEE
T ss_pred cEEEEecceeE-----CCEEEecCCCEEE------EEECCCCCcHHHHHHHHhCCCCCCCC-CCCcccCCcc-ceeeeeE
Confidence 37888888776 3577999999998 99999999999999999998764311 2222222211 1112457
Q ss_pred EEEcCCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHHHHHHHHHh
Q 007554 131 AYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEIL 210 (599)
Q Consensus 131 ~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSGGerqRv~ia~aL~ 210 (599)
+|++|++.+++.+||.||+.++.... ..+....+.+.++ ..++.+++||++|||+++
T Consensus 78 ~~v~q~~~~~~~Ltv~Dt~g~~~~~~------~~~~~~~i~~~i~-----------------~~~~~~l~qr~~IaRal~ 134 (418)
T 2qag_C 78 KVLIKEGGVQLLLTIVDTPGFGDAVD------NSNCWQPVIDYID-----------------SKFEDYLNAESRVNRRQM 134 (418)
T ss_dssp ECC------CEEEEEEECC-----------------CHHHHHHHH-----------------HHHHHHTTTSCC-CCCCC
T ss_pred EEEEecCCcccceeeeechhhhhhcc------chhhHHHHHHHHH-----------------HHHHHHHHHHHHHHHHhc
Confidence 89999988888899999988764321 0010111111111 135667788999999999
Q ss_pred hCCC---EEEEeCCC-CCCCHHHHHHHHHHHHHHHhCCCEEEEEecC
Q 007554 211 MRPR---LLFLDEPT-SGLDSAAAFFVTQTLRCLSRDGRTVIASIHQ 253 (599)
Q Consensus 211 ~~p~---illlDEPt-sgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~ 253 (599)
.+|+ +|++|||| +|||+... +.++.+.. +.+||+++|.
T Consensus 135 ~d~~~~vlL~ldePt~~~L~~~d~----~~lk~L~~-~v~iIlVinK 176 (418)
T 2qag_C 135 PDNRVQCCLYFIAPSGHGLKPLDI----EFMKRLHE-KVNIIPLIAK 176 (418)
T ss_dssp CCC-CCEEEEECCC-CCSCCHHHH----HHHHHHTT-TSEEEEEEES
T ss_pred cCCCeeEEEEEecCcccCCCHHHH----HHHHHHhc-cCcEEEEEEc
Confidence 9999 99999999 69998873 44455543 6788888876
No 112
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=99.59 E-value=2e-16 Score=153.12 Aligned_cols=175 Identities=12% Similarity=0.118 Sum_probs=98.0
Q ss_pred EEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCC-----CCCCCceeEEEECCEeCCCC
Q 007554 52 LTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRL-----ASNAFLSGTILLNGHKTKLS 126 (599)
Q Consensus 52 l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~G~sGsGKSTLl~~L~G~~-----~~~~~~~G~I~~~g~~~~~~ 126 (599)
|+++|+++.+. ..+|++ +.+++|..++|+|+||||||||+|.|+|.. .+ ..|.+.+.+.-. ..
T Consensus 4 l~~~~~~~~~~------~~~l~~--~~~~~~~~v~lvG~~g~GKSTLl~~l~g~~~~~~~~~---~~G~~~~~~~~~-~~ 71 (210)
T 1pui_A 4 LNYQQTHFVMS------APDIRH--LPSDTGIEVAFAGRSNAGKSSALNTLTNQKSLARTSK---TPGRTQLINLFE-VA 71 (210)
T ss_dssp -------CEEE------ESSGGG--SSCSCSEEEEEEECTTSSHHHHHTTTCCC----------------CCEEEEE-EE
T ss_pred hhhhhhhheee------cCCHhH--CCCCCCcEEEEECCCCCCHHHHHHHHhCCCccccccC---CCccceeeEEEE-ec
Confidence 78899999883 357888 889999999999999999999999999986 33 356554322100 00
Q ss_pred cCeEEEEcCCCCC----CCCCC---HHHHHHHHhhc-c----------CCCCCCHHHHHHHHHHHHHHcCCCcccccccc
Q 007554 127 FGTAAYVTQDDNL----IGTLT---VRETISYSARL-R----------LPDKMPWSEKRTLVERTIIEMGLQDCADTVIG 188 (599)
Q Consensus 127 ~~~~~yv~Q~~~l----~~~lT---V~e~l~~~~~~-~----------~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg 188 (599)
...-.+ +.+.+ .+.-. .+..+...... + ...... .....+.+++...++.... ++
T Consensus 72 -~~~~l~-Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~--~~~~~~~~~~~~~~~~~~~---v~ 144 (210)
T 1pui_A 72 -DGKRLV-DLPGYGYAEVPEEMKRKWQRALGEYLEKRQSLQGLVVLMDIRHPLK--DLDQQMIEWAVDSNIAVLV---LL 144 (210)
T ss_dssp -TTEEEE-ECCCCC------CCHHHHHHHHHHHHHHCTTEEEEEEEEETTSCCC--HHHHHHHHHHHHTTCCEEE---EE
T ss_pred -CCEEEE-ECcCCcccccCHHHHHHHHHHHHHHHHhhhcccEEEEEEECCCCCc--hhHHHHHHHHHHcCCCeEE---EE
Confidence 001011 11110 00000 11222221110 0 001111 1223445566666665321 22
Q ss_pred CcccCCCCHHHHHH-HHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCE
Q 007554 189 NWHLRGISGGERRR-VSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRT 246 (599)
Q Consensus 189 ~~~~~~LSGGerqR-v~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~L~~l~~~g~t 246 (599)
+ +...+|+||||| +..+++++.+|+++++|||||++|.....++.+.|.++.++|.|
T Consensus 145 n-K~D~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~Sal~~~~~~~l~~~l~~~~~~~~~ 202 (210)
T 1pui_A 145 T-KADKLASGARKAQLNMVREAVLAFNGDVQVETFSSLKKQGVDKLRQKLDTWFSEMQP 202 (210)
T ss_dssp E-CGGGSCHHHHHHHHHHHHHHHGGGCSCEEEEECBTTTTBSHHHHHHHHHHHHC----
T ss_pred e-cccCCCchhHHHHHHHHHHHHHhcCCCCceEEEeecCCCCHHHHHHHHHHHHhhccc
Confidence 2 334689999999 89999999999999999999999999999999999998766544
No 113
>3kta_B Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xew_Y 1xex_B*
Probab=99.57 E-value=8.3e-15 Score=138.83 Aligned_cols=79 Identities=20% Similarity=0.288 Sum_probs=68.4
Q ss_pred ccCCCCHHHHHHHHHHHHHhh----CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhccCeEE
Q 007554 191 HLRGISGGERRRVSIALEILM----RPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLY 266 (599)
Q Consensus 191 ~~~~LSGGerqRv~ia~aL~~----~p~illlDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~p~~~i~~~~D~v~ 266 (599)
.+..||||||||++||++|+. +|++++|||||+|||+.++..+.+.|+++.+ +.++|+++|++ .....+|+++
T Consensus 61 ~~~~LSgGekqr~ala~~la~~~~~~~~~llLDEp~a~LD~~~~~~~~~~l~~~~~-~~~~ivith~~--~~~~~ad~i~ 137 (173)
T 3kta_B 61 RIEAMSGGEKALTALAFVFAIQKFKPAPFYLFDEIDAHLDDANVKRVADLIKESSK-ESQFIVITLRD--VMMANADKII 137 (173)
T ss_dssp CGGGCCHHHHHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHTT-TSEEEEECSCH--HHHTTCSEEE
T ss_pred ccccCCHHHHHHHHHHHHHHhcccCCCCEEEECCCccCCCHHHHHHHHHHHHHhcc-CCEEEEEEecH--HHHHhCCEEE
Confidence 346799999999999999974 4699999999999999999999999999865 46899999994 4678999999
Q ss_pred EEe--CCe
Q 007554 267 LLS--GGK 272 (599)
Q Consensus 267 ~L~--~G~ 272 (599)
.+. +|.
T Consensus 138 ~v~~~~g~ 145 (173)
T 3kta_B 138 GVSMRDGV 145 (173)
T ss_dssp EEEEETTE
T ss_pred EEEecCCE
Confidence 764 664
No 114
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=99.55 E-value=1.7e-16 Score=156.28 Aligned_cols=147 Identities=21% Similarity=0.217 Sum_probs=98.3
Q ss_pred EEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC-CcCeEEEEcCCCCCCCCCCH----HHHHHH
Q 007554 77 GYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL-SFGTAAYVTQDDNLIGTLTV----RETISY 151 (599)
Q Consensus 77 ~~i~~Ge~~aI~G~sGsGKSTLl~~L~G~~~~~~~~~G~I~~~g~~~~~-~~~~~~yv~Q~~~l~~~lTV----~e~l~~ 151 (599)
-..++|++++|+||||||||||+++|+|..+|+ ..+|+|.+++.+... ..+.++|++|++..|+.+++ .|++.+
T Consensus 11 ~~~~~G~ii~l~GpsGsGKSTLlk~L~g~~~p~-~~~g~v~~ttr~~~~~e~~gi~y~fq~~~~f~~~~~~~~f~E~~~~ 89 (219)
T 1s96_A 11 HHMAQGTLYIVSAPSGAGKSSLIQALLKTQPLY-DTQVSVSHTTRQPRPGEVHGEHYFFVNHDEFKEMISRDAFLEHAEV 89 (219)
T ss_dssp ----CCCEEEEECCTTSCHHHHHHHHHHHSCTT-TEEECCCEECSCCCTTCCBTTTBEECCHHHHHHHHHTTCEEEEEEE
T ss_pred ccCCCCcEEEEECCCCCCHHHHHHHHhccCCCC-ceEEEEEecCCCCCcccccCceEEECCHHHHHHHHhcCHHHHHHHH
Confidence 357899999999999999999999999998752 258999998875432 23457899997655443333 121111
Q ss_pred HhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHH
Q 007554 152 SARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAF 231 (599)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSGGerqRv~ia~aL~~~p~illlDEPtsgLD~~~~~ 231 (599)
. |+ ..+.| +++ +.+++..++++||| ||+.++.
T Consensus 90 ~-----------------------------------~~--~yg~~---~~~---v~~~l~~G~illLD-----LD~~~~~ 121 (219)
T 1s96_A 90 F-----------------------------------GN--YYGTS---REA---IEQVLATGVDVFLD-----IDWQGAQ 121 (219)
T ss_dssp T-----------------------------------TE--EEEEE---HHH---HHHHHTTTCEEEEE-----CCHHHHH
T ss_pred H-----------------------------------hc--cCCCC---HHH---HHHHHhcCCeEEEE-----ECHHHHH
Confidence 0 10 00112 222 34555668999999 9999999
Q ss_pred HHHHHHHHHHhCCCEEEEEecCCchHHHhccCeEEEEeCCeEEEecChhhHHHHH
Q 007554 232 FVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAFEFF 286 (599)
Q Consensus 232 ~i~~~L~~l~~~g~tvi~~~H~p~~~i~~~~D~v~~L~~G~iv~~G~~~~~~~~f 286 (599)
++.+.+. ++.||++++|++ .++.+ |+ +..| .++++++..-+
T Consensus 122 ~i~~~l~----~~~tI~i~th~~-~~l~~---Rl--~~rG----~~~~e~i~~rl 162 (219)
T 1s96_A 122 QIRQKMP----HARSIFILPPSK-IELDR---RL--RGRG----QDSEEVIAKRM 162 (219)
T ss_dssp HHHHHCT----TCEEEEEECSSH-HHHHH---HH--HTTS----CSCHHHHHHHH
T ss_pred HHHHHcc----CCEEEEEECCCH-HHHHH---HH--HHcC----CCCHHHHHHHH
Confidence 9998875 589999999996 34443 43 6667 56777666544
No 115
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=99.55 E-value=1.2e-14 Score=141.58 Aligned_cols=155 Identities=21% Similarity=0.163 Sum_probs=100.5
Q ss_pred cceeeceE-EEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCcCeEEEEcCCCCCCCCCCHHH
Q 007554 69 HNVLEGLT-GYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLSFGTAAYVTQDDNLIGTLTVRE 147 (599)
Q Consensus 69 ~~iL~~vs-~~i~~Ge~~aI~G~sGsGKSTLl~~L~G~~~~~~~~~G~I~~~g~~~~~~~~~~~yv~Q~~~l~~~lTV~e 147 (599)
...|+++. +-+++|++++|+||||||||||++.|++ .. .+. +.|+..+..+ +..+
T Consensus 6 ~~~LD~~l~Ggi~~G~~~~i~G~~GsGKTtl~~~l~~--~~----~~~--------------v~~i~~~~~~----~~~~ 61 (220)
T 2cvh_A 6 TKSLDSLLGGGFAPGVLTQVYGPYASGKTTLALQTGL--LS----GKK--------------VAYVDTEGGF----SPER 61 (220)
T ss_dssp CHHHHHHTTSSBCTTSEEEEECSTTSSHHHHHHHHHH--HH----CSE--------------EEEEESSCCC----CHHH
T ss_pred cHHHHHhhcCCCcCCEEEEEECCCCCCHHHHHHHHHH--Hc----CCc--------------EEEEECCCCC----CHHH
Confidence 34566666 4799999999999999999999999998 22 122 2334333211 2211
Q ss_pred HHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHH--HHHHHHHHHHhhC-CCEEEEeCCCCC
Q 007554 148 TISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGE--RRRVSIALEILMR-PRLLFLDEPTSG 224 (599)
Q Consensus 148 ~l~~~~~~~~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSGGe--rqRv~ia~aL~~~-p~illlDEPtsg 224 (599)
-....... .... +++++.+. ....|+++ ++++..+++++.+ |+++++||||+.
T Consensus 62 ~~~~~~~~----~~~~-------~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~l~~~~~~lliiD~~~~~ 117 (220)
T 2cvh_A 62 LVQMAETR----GLNP-------EEALSRFI-------------LFTPSDFKEQRRVIGSLKKTVDSNFALVVVDSITAH 117 (220)
T ss_dssp HHHHHHTT----TCCH-------HHHHHHEE-------------EECCTTTSHHHHHHHHHHHHCCTTEEEEEEECCCCC
T ss_pred HHHHHHhc----CCCh-------HHHhhcEE-------------EEecCCHHHHHHHHHHHHHHhhcCCCEEEEcCcHHH
Confidence 11111110 1111 11222211 11245553 6788888999986 999999999999
Q ss_pred CCHHH--------HHHHHHHHHHHHh-CCCEEEEEecCCch------------HHHhccCeEEEEeCC
Q 007554 225 LDSAA--------AFFVTQTLRCLSR-DGRTVIASIHQPSS------------EVFELFDRLYLLSGG 271 (599)
Q Consensus 225 LD~~~--------~~~i~~~L~~l~~-~g~tvi~~~H~p~~------------~i~~~~D~v~~L~~G 271 (599)
+|+.. ..++++.|+++++ .|.|||+++|.... .+...+|.+++|+..
T Consensus 118 l~~~~~~~~~~~~~~~~~~~L~~l~~~~~~~vi~~~h~~~~~~~~~~~p~~~~~~~~~~d~vi~l~~~ 185 (220)
T 2cvh_A 118 YRAEENRSGLIAELSRQLQVLLWIARKHNIPVIVINQVHFDSRTEMTKPVAEQTLGYRCKDILRLDKL 185 (220)
T ss_dssp TTGGGGSSTTHHHHHHHHHHHHHHHHHHTCCEEEEECSSSSCTTSSCCSCCCHHHHHTSSEEEEEEEC
T ss_pred hhhcCchHHHHHHHHHHHHHHHHHHHHcCCEEEEEeeEEEcCCCCccccCCCcceeecCcEEEEEEEe
Confidence 99743 3556667888876 48999999998541 467899999999754
No 116
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=99.55 E-value=2.8e-18 Score=164.32 Aligned_cols=169 Identities=16% Similarity=0.142 Sum_probs=112.2
Q ss_pred CeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCcCeEEEEcCCCCCCCCCCHHHHHHHHhhccCCCCC
Q 007554 82 GTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLSFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKM 161 (599)
Q Consensus 82 Ge~~aI~G~sGsGKSTLl~~L~G~~~~~~~~~G~I~~~g~~~~~~~~~~~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~ 161 (599)
|++++|+||||||||||+++|++ + .+|++.++|.+.... ...++++|.....+..++++++.+.+....
T Consensus 2 g~ii~l~G~~GaGKSTl~~~L~~---~---~~g~~~i~~d~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~---- 70 (189)
T 2bdt_A 2 KKLYIITGPAGVGKSTTCKRLAA---Q---LDNSAYIEGDIINHM-VVGGYRPPWESDELLALTWKNITDLTVNFL---- 70 (189)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHH---H---SSSEEEEEHHHHHTT-CCTTCCCGGGCHHHHHHHHHHHHHHHHHHH----
T ss_pred CeEEEEECCCCCcHHHHHHHHhc---c---cCCeEEEcccchhhh-hccccccCccchhHHHHHHHHHHHHHHHHH----
Confidence 78999999999999999999997 2 268899988653221 234567776544445678888776532210
Q ss_pred CHHHHHHHHHHHHHHcCCCccccccccC---cccCCC--CHHHHHHHHHHH------HHhhCCCEEEEeCCCCCCCHHHH
Q 007554 162 PWSEKRTLVERTIIEMGLQDCADTVIGN---WHLRGI--SGGERRRVSIAL------EILMRPRLLFLDEPTSGLDSAAA 230 (599)
Q Consensus 162 ~~~~~~~~v~~~l~~l~L~~~~~~~vg~---~~~~~L--SGGerqRv~ia~------aL~~~p~illlDEPtsgLD~~~~ 230 (599)
.-+.....+...+. ...+.+ |+|++|++.++. +++.+|+...+|+ +||+...
T Consensus 71 --------------~~~~~~ild~~~~~~~~~~~~~~~~s~g~~~~~~~i~L~~~~e~l~~R~~~r~~d~---~ld~~~~ 133 (189)
T 2bdt_A 71 --------------LAQNDVVLDYIAFPDEAEALAQTVQAKVDDVEIRFIILWTNREELLRRDALRKKDE---QMGERCL 133 (189)
T ss_dssp --------------HTTCEEEEESCCCHHHHHHHHHHHHHHCSSEEEEEEEEECCHHHHHHHTTTSCC-------CGGGG
T ss_pred --------------hcCCcEEEeeccCHHHHHHHHHHHHhcccCCCeEEEEEeCCHHHHHHHHHhccccc---cCCHHHH
Confidence 00111111111000 011234 888888888888 9999999888884 8999888
Q ss_pred HHHHHHHHHHHhCCCEEEEEecC-CchHHHhccCeEEEEeCCeEEEecChhhH
Q 007554 231 FFVTQTLRCLSRDGRTVIASIHQ-PSSEVFELFDRLYLLSGGKTVYFGETSAA 282 (599)
Q Consensus 231 ~~i~~~L~~l~~~g~tvi~~~H~-p~~~i~~~~D~v~~L~~G~iv~~G~~~~~ 282 (599)
.. .+.++.+.+.+.++|.++|+ + +++.+.||+|+ ++|+++..|+++.+
T Consensus 134 ~~-~~~~~~~~~~~~~ii~tsh~~~-~~~e~~~~~i~--~~g~~~~~~~~~~~ 182 (189)
T 2bdt_A 134 EL-VEEFESKGIDERYFYNTSHLQP-TNLNDIVKNLK--TNPRFIFCMAGDPL 182 (189)
T ss_dssp HH-HHHHHHTTCCTTSEEECSSSCG-GGHHHHHHHHH--HCGGGSCC------
T ss_pred HH-HHHHhhcCCCccEEEeCCCCCh-hhHHHHHHHHh--hCCcEEEeecCCch
Confidence 88 88888886667899999998 6 46889999999 99999999987643
No 117
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=99.51 E-value=7.8e-17 Score=154.09 Aligned_cols=152 Identities=14% Similarity=0.039 Sum_probs=94.3
Q ss_pred EEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCC---CCcCeEEEEcCCCCCCCCCCHHHHHHHHhh
Q 007554 78 YAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTK---LSFGTAAYVTQDDNLIGTLTVRETISYSAR 154 (599)
Q Consensus 78 ~i~~Ge~~aI~G~sGsGKSTLl~~L~G~~~~~~~~~G~I~~~g~~~~---~~~~~~~yv~Q~~~l~~~lTV~e~l~~~~~ 154 (599)
.+++|++++|+||||||||||+++|+|. ++ .|.|.++|.+.. .....++|++|+.. +.+||.|++.+.+.
T Consensus 5 ~i~~g~~i~l~G~~GsGKSTl~~~La~~--~~---~g~i~i~~d~~~~~~~~~~~~~~~~~~~~--~~~~v~~~l~~~~~ 77 (191)
T 1zp6_A 5 DDLGGNILLLSGHPGSGKSTIAEALANL--PG---VPKVHFHSDDLWGYIKHGRIDPWLPQSHQ--QNRMIMQIAADVAG 77 (191)
T ss_dssp -CCTTEEEEEEECTTSCHHHHHHHHHTC--SS---SCEEEECTTHHHHTCCSSCCCTTSSSHHH--HHHHHHHHHHHHHH
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHhc--cC---CCeEEEcccchhhhhhcccccCCccchhh--hhHHHHHHHHHHHH
Confidence 3779999999999999999999999997 33 799999986521 11233567777643 35688898876542
Q ss_pred ccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHH
Q 007554 155 LRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVT 234 (599)
Q Consensus 155 ~~~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSGGerqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~i~ 234 (599)
........ ..++.++...++...... +..+..+|+|++||+.++|++.++|+++ +|+.....+.
T Consensus 78 ~~~~~~~~-----~~~~~~~~~~~l~~~~~~---~~~~~~ls~~~~~~v~~~R~~~r~~~~l--------ld~~~~~~~~ 141 (191)
T 1zp6_A 78 RYAKEGYF-----VILDGVVRPDWLPAFTAL---ARPLHYIVLRTTAAEAIERCLDRGGDSL--------SDPLVVADLH 141 (191)
T ss_dssp HHHHTSCE-----EEECSCCCTTTTHHHHTT---CSCEEEEEEECCHHHHHHHHHTTCTTSC--------CCHHHHHHHH
T ss_pred HHhccCCe-----EEEeccCcHHHHHHHHhc---CCCeEEEEecCCHHHHHHHHHhcCCCcc--------CCHHHHHHHH
Confidence 21000000 000000011111111100 1123459999999999999999999876 6888887777
Q ss_pred HHHHHHHhCCCEEEEEec
Q 007554 235 QTLRCLSRDGRTVIASIH 252 (599)
Q Consensus 235 ~~L~~l~~~g~tvi~~~H 252 (599)
+.++.+...+..+|.++|
T Consensus 142 ~~~~~l~~~~~~~i~t~~ 159 (191)
T 1zp6_A 142 SQFADLGAFEHHVLPVSG 159 (191)
T ss_dssp HHTTCCGGGGGGEEECTT
T ss_pred HHHhccCcccccEEECCC
Confidence 777665432333444433
No 118
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=99.48 E-value=2.1e-17 Score=175.23 Aligned_cols=167 Identities=15% Similarity=0.031 Sum_probs=101.0
Q ss_pred eeeceEEEEeC--CeEEEEECCCCCcHHHHHHHHHcCCCCCCCce----eEEEECCEeCCCCcCeEEEEcCCCCCCCCCC
Q 007554 71 VLEGLTGYAEP--GTLTALMGPSGSGKSTLLDALSSRLASNAFLS----GTILLNGHKTKLSFGTAAYVTQDDNLIGTLT 144 (599)
Q Consensus 71 iL~~vs~~i~~--Ge~~aI~G~sGsGKSTLl~~L~G~~~~~~~~~----G~I~~~g~~~~~~~~~~~yv~Q~~~l~~~lT 144 (599)
+.+.|++.+++ |+.++|+||||||||||+++|+|++++. + |+|.+++.... .+..++...
T Consensus 157 ~~~~v~~~v~~~lg~k~~IvG~nGsGKSTLlk~L~gl~~~~---~~~e~G~i~i~~~~~~-----------~~~~~~~~~ 222 (365)
T 1lw7_A 157 YWKFIPKEARPFFAKTVAILGGESSGKSVLVNKLAAVFNTT---SAWEYGREFVFEKLGG-----------DEQAMQYSD 222 (365)
T ss_dssp GGGGSCTTTGGGTCEEEEEECCTTSHHHHHHHHHHHHTTCE---EECCTTHHHHHHSSSS-----------CTTSSCTTT
T ss_pred ChhhCCHHHHHhhhCeEEEECCCCCCHHHHHHHHHHHhCCC---cchhhHHHHHHhhcCC-----------CcccCChhH
Confidence 46789999999 9999999999999999999999998874 6 66665321000 000011112
Q ss_pred HHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHc--CCCccccccccCcccCCCCHHHHHHHHHHHHHh-hCCCEEEEeC-
Q 007554 145 VRETISYSARLRLPDKMPWSEKRTLVERTIIEM--GLQDCADTVIGNWHLRGISGGERRRVSIALEIL-MRPRLLFLDE- 220 (599)
Q Consensus 145 V~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~l--~L~~~~~~~vg~~~~~~LSGGerqRv~ia~aL~-~~p~illlDE- 220 (599)
. +++.+.... .......+.+.+ +..+..++ ....+|+|++||..+++++. .+|++++|||
T Consensus 223 ~-~~I~~~~q~----------~~~~~~t~~~nl~~~~~~~~~~-----~~~~~~~~~~~~~~i~~~~~~~~~~lllLdE~ 286 (365)
T 1lw7_A 223 Y-PQMALGHQR----------YIDYAVRHSHKIAFIDTDFITT-----QAFCIQYEGKAHPFLDSMIKEYPFDVTILLKN 286 (365)
T ss_dssp H-HHHHHHHHH----------HHHHHHHHCSSEEEESSCHHHH-----HHHHHHHHSCCCHHHHHHHHHSCCSEEEEEEC
T ss_pred H-HHHHHHHHH----------HHHHHHhccCCEEEEeCCchHH-----HHHHHHHcCCCCHHHHHHHhhcCCCEEEECCC
Confidence 2 333332110 000000000000 00111111 12246777788888888775 5999999999
Q ss_pred --CC------CCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCCchHHHhccCeEEEEe
Q 007554 221 --PT------SGLDSAAAFFVTQTLRCLSR-DGRTVIASIHQPSSEVFELFDRLYLLS 269 (599)
Q Consensus 221 --Pt------sgLD~~~~~~i~~~L~~l~~-~g~tvi~~~H~p~~~i~~~~D~v~~L~ 269 (599)
|+ .++|...+..+.+.|+++.+ .|.+|++++|. . ...+++|++..++
T Consensus 287 ~~p~~~~g~~~sld~~~r~~l~~~l~~l~~~~~~~ililde~-~-~~~r~~~~i~~i~ 342 (365)
T 1lw7_A 287 NTEWVDDGLRSLGSQKQRQQFQQLLKKLLDKYKVPYIEIESP-S-YLDRYNQVKAVIE 342 (365)
T ss_dssp CCC-----------CCSHHHHHHHHHHHHHGGGCCCEEEECS-S-HHHHHHHHHHHHH
T ss_pred CCCcccCCCcCCccHHHHHHHHHHHHHHHHHcCCCEEEeCCC-C-HHHHHHHHHHHHH
Confidence 65 58999999999999998765 48899999875 3 4556666555543
No 119
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.48 E-value=6.3e-16 Score=165.61 Aligned_cols=173 Identities=13% Similarity=0.130 Sum_probs=111.8
Q ss_pred cceeeceEEEEeCCeE--EEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCcCeEEEEcCCCCCCCCCCHH
Q 007554 69 HNVLEGLTGYAEPGTL--TALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLSFGTAAYVTQDDNLIGTLTVR 146 (599)
Q Consensus 69 ~~iL~~vs~~i~~Ge~--~aI~G~sGsGKSTLl~~L~G~~~~~~~~~G~I~~~g~~~~~~~~~~~yv~Q~~~l~~~lTV~ 146 (599)
.+ |+++|+++++|++ ++|+||||||||||+|+|+|..- .|.-.. ........+.++|++|++.+++.+||.
T Consensus 28 ~~-L~~vsl~i~~Gei~~vaLvG~nGaGKSTLln~L~G~~l-----~g~~~~-~~~~~~~~~~i~~v~Q~~~l~~~ltv~ 100 (427)
T 2qag_B 28 LP-DQLVNKSVSQGFCFNILCVGETGLGKSTLMDTLFNTKF-----EGEPAT-HTQPGVQLQSNTYDLQESNVRLKLTIV 100 (427)
T ss_dssp -C-HHHHHHSCC-CCEEEEEEECSTTSSSHHHHHHHHTSCC-------------CCSSCEEEEEEEEEEC--CEEEEEEE
T ss_pred ee-cCCCceEecCCCeeEEEEECCCCCCHHHHHHHHhCccc-----cCCcCC-CCCccceEeeEEEEeecCccccccchh
Confidence 45 9999999999999 99999999999999999999842 222111 001111234689999999888889999
Q ss_pred HHHHHHhhccCCCCCCHH----HHHHHHHHHHHHc-CCCc----ccccc----cc--CcccCCCCHHHHHHHHHHHHHhh
Q 007554 147 ETISYSARLRLPDKMPWS----EKRTLVERTIIEM-GLQD----CADTV----IG--NWHLRGISGGERRRVSIALEILM 211 (599)
Q Consensus 147 e~l~~~~~~~~~~~~~~~----~~~~~v~~~l~~l-~L~~----~~~~~----vg--~~~~~~LSGGerqRv~ia~aL~~ 211 (599)
||+.++.... ...... ......++.+... ++.. ..|+. +. ....++|+-.+ +.|+++|..
T Consensus 101 D~~~~g~~~~--~~~~~~~i~~~i~~q~~~~L~e~~~i~r~l~~~~d~rVh~~v~fI~d~~~~l~~~D---ieilk~L~~ 175 (427)
T 2qag_B 101 STVGFGDQIN--KEDSYKPIVEFIDAQFEAYLQEELKIRRVLHTYHDSRIHVCLYFIAPTGHSLKSLD---LVTMKKLDS 175 (427)
T ss_dssp EEECCCC-CC--HHHHSHHHHHHHHHHHHHHHHHC--CCCCCCCSCC--CCEEEEEECCCC---CHHH---HHHHHHTCS
T ss_pred hhhhhhhccc--cchhhhHHHHHHHHHHHHHHHHHHhhhhhhcccccccccEEEEEEeCCCCCCCHHH---HHHHHHHhh
Confidence 9987653210 000001 1233455556554 4431 12332 11 01123577666 789999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHH-HHhCCCEEEEEecC
Q 007554 212 RPRLLFLDEPTSGLDSAAAFFVTQTLRC-LSRDGRTVIASIHQ 253 (599)
Q Consensus 212 ~p~illlDEPtsgLD~~~~~~i~~~L~~-l~~~g~tvi~~~H~ 253 (599)
+++++++|||+..|.+.....+.+.+++ +...|..|+.++.+
T Consensus 176 ~~~vI~Vi~KtD~Lt~~E~~~l~~~I~~~L~~~gi~I~~is~~ 218 (427)
T 2qag_B 176 KVNIIPIIAKADAISKSELTKFKIKITSELVSNGVQIYQFPTD 218 (427)
T ss_dssp CSEEEEEESCGGGSCHHHHHHHHHHHHHHHBTTBCCCCCCC--
T ss_pred CCCEEEEEcchhccchHHHHHHHHHHHHHHHHcCCcEEecCCC
Confidence 9999999999999999999999999986 77789998888754
No 120
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=99.48 E-value=6.3e-15 Score=156.47 Aligned_cols=130 Identities=19% Similarity=0.273 Sum_probs=95.8
Q ss_pred eeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC-CcCeEEEEcCCCCCCCCCCHHHHH
Q 007554 71 VLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL-SFGTAAYVTQDDNLIGTLTVRETI 149 (599)
Q Consensus 71 iL~~vs~~i~~Ge~~aI~G~sGsGKSTLl~~L~G~~~~~~~~~G~I~~~g~~~~~-~~~~~~yv~Q~~~l~~~lTV~e~l 149 (599)
+|++++ +++|++++|+||||||||||+++|+|.+++. .+|+|.+.|.+... ..+.++||+|..
T Consensus 127 ~l~~l~--~~~g~~i~ivG~~GsGKTTll~~l~~~~~~~--~~g~I~~~e~~~e~~~~~~~~~v~Q~~------------ 190 (372)
T 2ewv_A 127 KVLELC--HRKMGLILVTGPTGSGKSTTIASMIDYINQT--KSYHIITIEDPIEYVFKHKKSIVNQRE------------ 190 (372)
T ss_dssp SHHHHT--TSSSEEEEEECSSSSSHHHHHHHHHHHHHHH--SCCEEEEEESSCCSCCCCSSSEEEEEE------------
T ss_pred HHHHHh--hcCCCEEEEECCCCCCHHHHHHHHHhhcCcC--CCcEEEEecccHhhhhccCceEEEeee------------
Confidence 566665 7899999999999999999999999998762 16999776655432 124567777731
Q ss_pred HHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHH
Q 007554 150 SYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAA 229 (599)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSGGerqRv~ia~aL~~~p~illlDEPtsgLD~~~ 229 (599)
+|+. +..+ +.+|+++|..+|+++++|||+ |..+
T Consensus 191 ---------------------------~g~~-----------~~~~------~~~l~~~L~~~pd~illdE~~---d~e~ 223 (372)
T 2ewv_A 191 ---------------------------VGED-----------TKSF------ADALRAALREDPDVIFVGEMR---DLET 223 (372)
T ss_dssp ---------------------------BTTT-----------BSCS------HHHHHHHTTSCCSEEEESCCC---SHHH
T ss_pred ---------------------------cCCC-----------HHHH------HHHHHHHhhhCcCEEEECCCC---CHHH
Confidence 2221 1124 469999999999999999999 7766
Q ss_pred HHHHHHHHHHHHhCCCEEEEEecCCchHHHhccCeEEEEe
Q 007554 230 AFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLS 269 (599)
Q Consensus 230 ~~~i~~~L~~l~~~g~tvi~~~H~p~~~i~~~~D~v~~L~ 269 (599)
... .++. +..|.+|+.++|+.+ +...+||++.|.
T Consensus 224 ~~~---~l~~-~~~g~~vi~t~H~~~--~~~~~~rl~~l~ 257 (372)
T 2ewv_A 224 VET---ALRA-AETGHLVFGTLHTNT--AIDTIHRIVDIF 257 (372)
T ss_dssp HHH---HHHH-HTTTCEEEECCCCCS--HHHHHHHHHHTS
T ss_pred HHH---HHHH-HhcCCEEEEEECcch--HHHHHHHHHHhc
Confidence 443 3433 356899999999953 678889887764
No 121
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=99.47 E-value=7e-15 Score=155.58 Aligned_cols=135 Identities=18% Similarity=0.150 Sum_probs=100.7
Q ss_pred eeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeC-CC--CcCeEEEEc-CCCCCCCCCCHHH
Q 007554 72 LEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKT-KL--SFGTAAYVT-QDDNLIGTLTVRE 147 (599)
Q Consensus 72 L~~vs~~i~~Ge~~aI~G~sGsGKSTLl~~L~G~~~~~~~~~G~I~~~g~~~-~~--~~~~~~yv~-Q~~~l~~~lTV~e 147 (599)
++++|+.+++|++++|+||||||||||+|+|+|++++. +|.|+++|... .. ..+.++|++ |++.+
T Consensus 165 ~~~l~~~i~~G~~i~ivG~sGsGKSTll~~l~~~~~~~---~g~I~ie~~~e~~~~~~~~~v~~v~~q~~~~-------- 233 (361)
T 2gza_A 165 MSFLRRAVQLERVIVVAGETGSGKTTLMKALMQEIPFD---QRLITIEDVPELFLPDHPNHVHLFYPSEAKE-------- 233 (361)
T ss_dssp HHHHHHHHHTTCCEEEEESSSSCHHHHHHHHHTTSCTT---SCEEEEESSSCCCCTTCSSEEEEECC-------------
T ss_pred HHHHHHHHhcCCEEEEECCCCCCHHHHHHHHHhcCCCC---ceEEEECCccccCccccCCEEEEeecCcccc--------
Confidence 39999999999999999999999999999999999885 89999998531 11 235678888 54321
Q ss_pred HHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCH
Q 007554 148 TISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDS 227 (599)
Q Consensus 148 ~l~~~~~~~~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSGGerqRv~ia~aL~~~p~illlDEPtsgLD~ 227 (599)
+++++..+|..|+.++..+|+.+++||++.
T Consensus 234 ----------------------------------------------~~~~~~t~~~~i~~~l~~~pd~~l~~e~r~---- 263 (361)
T 2gza_A 234 ----------------------------------------------EENAPVTAATLLRSCLRMKPTRILLAELRG---- 263 (361)
T ss_dssp ---------------------------------------------------CCHHHHHHHHTTSCCSEEEESCCCS----
T ss_pred ----------------------------------------------ccccccCHHHHHHHHHhcCCCEEEEcCchH----
Confidence 012233466677777778899999999986
Q ss_pred HHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhccCeEEEEeCCe
Q 007554 228 AAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGK 272 (599)
Q Consensus 228 ~~~~~i~~~L~~l~~~g~tvi~~~H~p~~~i~~~~D~v~~L~~G~ 272 (599)
.++.+.|+.+.....|++.++|..+ ....+||+..+..|.
T Consensus 264 ---~~~~~~l~~l~~g~~~~l~t~H~~~--~~~~~~Rl~~l~~~~ 303 (361)
T 2gza_A 264 ---GEAYDFINVAASGHGGSITSCHAGS--CELTFERLALMVLQN 303 (361)
T ss_dssp ---THHHHHHHHHHTTCCSCEEEEECSS--HHHHHHHHHHHHTTS
T ss_pred ---HHHHHHHHHHhcCCCeEEEEECCCC--HHHHHHHHHHHHhcc
Confidence 3455667777554457899999954 678899999988764
No 122
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=99.45 E-value=4.7e-16 Score=147.21 Aligned_cols=137 Identities=17% Similarity=0.217 Sum_probs=89.3
Q ss_pred eEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeC-CC-------Cc-CeEE----EEcCCCCCCCCCCHHHHH
Q 007554 83 TLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKT-KL-------SF-GTAA----YVTQDDNLIGTLTVRETI 149 (599)
Q Consensus 83 e~~aI~G~sGsGKSTLl~~L~G~~~~~~~~~G~I~~~g~~~-~~-------~~-~~~~----yv~Q~~~l~~~lTV~e~l 149 (599)
++++|+|+||||||||+++|+|++++.....|.|.++|.+. +. .+ +.++ +++|+..+| +++
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~~~~~g~~~G~I~~dg~~i~~~~~~~~d~~r~~~ig~~~~~~~~~~~~~----i~~-- 76 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPILRERGLRVAVVKRHAHGDFEIDKEGKDSWKIYNSGADVVIASPVKLAF----IRR-- 76 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHHHHHTTCCEEEEEC------------CHHHHHHHHTCEEEEECSSEEEE----EEE--
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhhhcCCceEEEEEcCcccccCCccchhHHHHHhcCCceEEECCCcEEE----Eec--
Confidence 58999999999999999999999876433379999999762 11 11 2355 888887655 110
Q ss_pred HHHhhccCCCCCCHHHHHHHHHHHHHH-cCCCccccccccCcccCCCCHHHHHHHHHHHHHhhCCCEE-------EEeCC
Q 007554 150 SYSARLRLPDKMPWSEKRTLVERTIIE-MGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLL-------FLDEP 221 (599)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~v~~~l~~-l~L~~~~~~~vg~~~~~~LSGGerqRv~ia~aL~~~p~il-------llDEP 221 (599)
. . .+....++++++. + . ..|+.+++ +||||||||++|||+++.+|++. .-|.|
T Consensus 77 --------~---~-~~~~a~l~~~i~~~l--~-g~dt~i~E----glSgGq~qri~lARall~~p~i~~~~~~a~~~~~~ 137 (171)
T 2f1r_A 77 --------V---S-EEEGNDLDWIYERYL--S-DYDLVITE----GFSKAGKDRIVVVKKPEEVEHFRQGRILAVVCDER 137 (171)
T ss_dssp --------C---C-HHHHTCHHHHHHHHT--T-TCSEEEEE----SCGGGCCCEEEECSSGGGGGGGCSSCEEEEECSSC
T ss_pred --------C---C-hhhhhCHHHHHHhhC--C-CCCEEEEC----CcCCCCCcEEEEEecccCCCccCccceEEEEecCC
Confidence 0 0 1111234556655 4 3 47999886 59999999999999999999873 23555
Q ss_pred CCC---CCHHHHHHHHHHHHHHHhCC
Q 007554 222 TSG---LDSAAAFFVTQTLRCLSRDG 244 (599)
Q Consensus 222 tsg---LD~~~~~~i~~~L~~l~~~g 244 (599)
..+ +|......+.+.+.+...+|
T Consensus 138 ~~~~~~f~~~~~~~~a~~i~~~~~~~ 163 (171)
T 2f1r_A 138 VDGHKWFRRDEVERIAEFILSLLREG 163 (171)
T ss_dssp CSSSCEECTTCHHHHHHHHHHHHTC-
T ss_pred cccCcccCcccHHHHHHHHHHHHhcc
Confidence 322 34455677777776665554
No 123
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=99.44 E-value=4.4e-14 Score=148.37 Aligned_cols=121 Identities=19% Similarity=0.112 Sum_probs=87.9
Q ss_pred eeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCC-CCCCceeEEEEC-CEeCC-CCcCeEEEEcCCCCCCCCCCHHH
Q 007554 71 VLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLA-SNAFLSGTILLN-GHKTK-LSFGTAAYVTQDDNLIGTLTVRE 147 (599)
Q Consensus 71 iL~~vs~~i~~Ge~~aI~G~sGsGKSTLl~~L~G~~~-~~~~~~G~I~~~-g~~~~-~~~~~~~yv~Q~~~l~~~lTV~e 147 (599)
-+++++.. .+|++++|+||||||||||+|+|+|... +. +|+|.++ |.... .....+++++|+..++++.+|+|
T Consensus 205 gl~~L~~~-~~G~~~~lvG~sG~GKSTLln~L~g~~~~~~---~G~I~~~~G~g~~tt~~~~i~~v~q~~~l~dtpgv~e 280 (358)
T 2rcn_A 205 GLKPLEEA-LTGRISIFAGQSGVGKSSLLNALLGLQNEIL---TNDVSNVSGLGQHTTTAARLYHFPHGGDVIDSPGVRE 280 (358)
T ss_dssp THHHHHHH-HTTSEEEEECCTTSSHHHHHHHHHCCSSCCC---CC-------------CCCEEEECTTSCEEEECHHHHT
T ss_pred CHHHHHHh-cCCCEEEEECCCCccHHHHHHHHhccccccc---cCCccccCCCCccceEEEEEEEECCCCEecCcccHHH
Confidence 45666654 4899999999999999999999999987 74 8999987 65432 23357899999998998889988
Q ss_pred HHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHHHHHHHHH
Q 007554 148 TISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEI 209 (599)
Q Consensus 148 ~l~~~~~~~~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSGGerqRv~ia~aL 209 (599)
+ . + .....++..+.+.++++.+|+.+..|... .++| ||+||++||+++
T Consensus 281 ~---~--l---~~l~~~e~~~~~~e~l~~~gl~~f~~~~~-----~~lS-G~~~r~ala~gl 328 (358)
T 2rcn_A 281 F---G--L---WHLEPEQITQGFVEFHDYLGHCKYRDCKH-----DADP-GCAIREAVENGA 328 (358)
T ss_dssp C---C--C---CCCCHHHHHHTSGGGGGGTTCSSSTTCCS-----SSCT-TCHHHHHHHHTS
T ss_pred h---h--h---cCCCHHHHHHHHHHHHHHcCCchhcCCCc-----ccCC-HHHHHHHHHhcC
Confidence 4 1 1 12445566677888899999987777644 5699 999999999864
No 124
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=99.44 E-value=1.5e-17 Score=172.99 Aligned_cols=159 Identities=14% Similarity=0.105 Sum_probs=98.5
Q ss_pred eEEEEECCCCCcHHHHHHHHHcCC--------CCCCCceeEEEECCEeCCCC--------------------cCeEEEE-
Q 007554 83 TLTALMGPSGSGKSTLLDALSSRL--------ASNAFLSGTILLNGHKTKLS--------------------FGTAAYV- 133 (599)
Q Consensus 83 e~~aI~G~sGsGKSTLl~~L~G~~--------~~~~~~~G~I~~~g~~~~~~--------------------~~~~~yv- 133 (599)
++++|+|+||||||||||.|.|.. .+ ..|+|.+||.+.... .+.++++
T Consensus 5 ~v~~i~G~~GaGKTTll~~l~~~~~~~~~aVi~~---d~G~i~idg~~l~~~~~~~~el~~gCicc~~~~~~~~~l~~l~ 81 (318)
T 1nij_A 5 AVTLLTGFLGAGKTTLLRHILNEQHGYKIAVIEN---EFGEVSVDDQLIGDRATQIKTLTNGCICCSRSNELEDALLDLL 81 (318)
T ss_dssp EEEEEEESSSSSCHHHHHHHHHSCCCCCEEEECS---SCCSCCEEEEEECTTSCEEEEETTSCEEECTTSCHHHHHHHHH
T ss_pred cEEEEEecCCCCHHHHHHHHHhhcCCCcEEEEEe---cCcccCccHHHHhCCCCCEEEECCCceEEcccHHHHHHHHHHH
Confidence 689999999999999999999986 33 389999999864321 0124455
Q ss_pred --cCCCCCCCCCCHHHHHHHHhhccCCCCC---CHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHHHHHHHH
Q 007554 134 --TQDDNLIGTLTVRETISYSARLRLPDKM---PWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALE 208 (599)
Q Consensus 134 --~Q~~~l~~~lTV~e~l~~~~~~~~~~~~---~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSGGerqRv~ia~a 208 (599)
+|+..+++..+|.||..++......... .......+++.++..+++.+..+.. .++|+||+||+..++.
T Consensus 82 ~~~q~~~~~~~~~v~E~~~l~~p~~~~~~~~~~~~~~~~~~l~~~l~~vd~~~~~~~~------~~ls~g~~Q~~~ad~i 155 (318)
T 1nij_A 82 DNLDKGNIQFDRLVIECTGMADPGPIIQTFFSHEVLCQRYLLDGVIALVDAVHADEQM------NQFTIAQSQVGYADRI 155 (318)
T ss_dssp HHHHHTSCCCSEEEEEEETTCCHHHHHHHHHHSHHHHHHEEEEEEEEEEETTTHHHHH------HHCHHHHHHHHTCSEE
T ss_pred hHHhcCCCCCCEEEEeCCCCCCHHHHHHHHhcCccccCeEEECCEEEEEEHHHHHHHH------hhchHHHHHHHhCCEE
Confidence 4655555556666665442100000000 0000000011112222333333322 2589999999998888
Q ss_pred HhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhccC
Q 007554 209 ILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFD 263 (599)
Q Consensus 209 L~~~p~illlDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~p~~~i~~~~D 263 (599)
++.+|+++ ||| ..+.+.|+++. .+.+|++++|++. ++..++|
T Consensus 156 ll~k~dl~--de~---------~~l~~~l~~l~-~~~~ii~~sh~~~-~~~~l~~ 197 (318)
T 1nij_A 156 LLTKTDVA--GEA---------EKLHERLARIN-ARAPVYTVTHGDI-DLGLLFN 197 (318)
T ss_dssp EEECTTTC--SCT---------HHHHHHHHHHC-SSSCEEECCSSCC-CGGGGSC
T ss_pred EEECcccC--CHH---------HHHHHHHHHhC-CCCeEEEecccCC-CHHHHhC
Confidence 88999887 898 77888888875 5789999999864 3334443
No 125
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Probab=99.44 E-value=3.6e-13 Score=142.94 Aligned_cols=76 Identities=24% Similarity=0.307 Sum_probs=67.5
Q ss_pred ccCCCCHHHHHHH------HHHHHHhhC-CCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhccC
Q 007554 191 HLRGISGGERRRV------SIALEILMR-PRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFD 263 (599)
Q Consensus 191 ~~~~LSGGerqRv------~ia~aL~~~-p~illlDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~p~~~i~~~~D 263 (599)
.++.||||||||+ ++|++|+.+ |++|||||||+|||+..+..+.+.|+++.+ +.+||++||++. +...+|
T Consensus 277 ~~~~lS~G~~~~~~lal~la~a~~l~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~~-~~~vi~~th~~~--~~~~~d 353 (371)
T 3auy_A 277 TIDNLSGGEQIAVALSLRLAIANALIGNRVECIILDEPTVYLDENRRAKLAEIFRKVKS-IPQMIIITHHRE--LEDVAD 353 (371)
T ss_dssp CGGGSCHHHHHHHHHHHHHHHHHHHHSSCCSEEEEESTTTTCCHHHHHHHHHHHHHCCS-CSEEEEEESCGG--GGGGCS
T ss_pred chHhcCHHHHHHHHHHHHHHHHHHHhcCCCCeEEEeCCCCcCCHHHHHHHHHHHHHhcc-CCeEEEEEChHH--HHhhCC
Confidence 4567999999988 567889999 999999999999999999999999998743 468999999963 678999
Q ss_pred eEEEEe
Q 007554 264 RLYLLS 269 (599)
Q Consensus 264 ~v~~L~ 269 (599)
++++|+
T Consensus 354 ~~~~l~ 359 (371)
T 3auy_A 354 VIINVK 359 (371)
T ss_dssp EEEEEE
T ss_pred EEEEEE
Confidence 999997
No 126
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=99.44 E-value=2.9e-16 Score=157.01 Aligned_cols=152 Identities=20% Similarity=0.187 Sum_probs=99.6
Q ss_pred CCeEEEEECCCCCcHHHHHHHHH---cCCCCCCCceeEEEECCEeCCCC-cCeEEEEcCCCCCCCCCCHHHHHHHHhhcc
Q 007554 81 PGTLTALMGPSGSGKSTLLDALS---SRLASNAFLSGTILLNGHKTKLS-FGTAAYVTQDDNLIGTLTVRETISYSARLR 156 (599)
Q Consensus 81 ~Ge~~aI~G~sGsGKSTLl~~L~---G~~~~~~~~~G~I~~~g~~~~~~-~~~~~yv~Q~~~l~~~lTV~e~l~~~~~~~ 156 (599)
++++++|+||||||||||+++|+ |...++ +|+|.++|.+.... ...+.+++|+..+++..++.+++.......
T Consensus 26 ~~~~i~l~G~~GsGKSTl~k~La~~lg~~~~~---~G~i~~~~~~~~~~~~~~i~~~~~~~~~~~~~~v~~~l~~~l~~~ 102 (246)
T 2bbw_A 26 KLLRAVILGPPGSGKGTVCQRIAQNFGLQHLS---SGHFLRENIKASTEVGEMAKQYIEKSLLVPDHVITRLMMSELENR 102 (246)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHHCCCCEE---HHHHHHHHHHTTCHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTC
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHhCCeEec---HHHHHHHHHhcCChHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhc
Confidence 47899999999999999999999 987764 78888876542211 122445677777888889999998753210
Q ss_pred C-----CCCCCHHHHHHHHHHHHH--HcCCCccc-------cccccCcccCCCCHHHHHHHHHHHHH-hhCCCEEEEe--
Q 007554 157 L-----PDKMPWSEKRTLVERTII--EMGLQDCA-------DTVIGNWHLRGISGGERRRVSIALEI-LMRPRLLFLD-- 219 (599)
Q Consensus 157 ~-----~~~~~~~~~~~~v~~~l~--~l~L~~~~-------~~~vg~~~~~~LSGGerqRv~ia~aL-~~~p~illlD-- 219 (599)
. -...+... ..++.+.. ..++--.. -..+.++.+..||| |+ ++| +.+|++++||
T Consensus 103 ~~~~~il~g~~~~~--~~~~~l~~~~~~~~vi~L~~~~~~~l~r~~~r~~~~lSg----rv---~al~~~~P~~lllD~~ 173 (246)
T 2bbw_A 103 RGQHWLLDGFPRTL--GQAEALDKICEVDLVISLNIPFETLKDRLSRRWIHPPSG----RV---YNLDFNPPHVHGIDDV 173 (246)
T ss_dssp TTSCEEEESCCCSH--HHHHHHHTTCCCCEEEEEECCHHHHHHHHHTEEEETTTT----EE---EETTTSCCSSTTBCTT
T ss_pred CCCeEEEECCCCCH--HHHHHHHhhcCCCEEEEEECCHHHHHHHHHcCCCcCCCC----Cc---cccccCCCcccccccc
Confidence 0 00111111 11222211 11100000 01111234557999 66 677 9999999999
Q ss_pred --CCCCCCCHHHHHHHHHHHHHHHhCC
Q 007554 220 --EPTSGLDSAAAFFVTQTLRCLSRDG 244 (599)
Q Consensus 220 --EPtsgLD~~~~~~i~~~L~~l~~~g 244 (599)
|||++||..+...+.+.|+++.+++
T Consensus 174 ~~EP~~~ld~~~~~~i~~~l~~~~~~~ 200 (246)
T 2bbw_A 174 TGEPLVQQEDDKPEAVAARLRQYKDVA 200 (246)
T ss_dssp TCCBCBCCGGGSHHHHHHHHHHHHHHH
T ss_pred cccccccCCCCcHHHHHHHHHHHHHhH
Confidence 9999999999999999999887653
No 127
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=99.43 E-value=1e-13 Score=137.06 Aligned_cols=153 Identities=16% Similarity=0.198 Sum_probs=86.5
Q ss_pred EEEeCCeEEEEECCCCCcHHHHHHHHHc--CCCCC--CCceeEEEECCEeCCCCcCeEEEEcCCCCCCCCCCHHHHHHHH
Q 007554 77 GYAEPGTLTALMGPSGSGKSTLLDALSS--RLASN--AFLSGTILLNGHKTKLSFGTAAYVTQDDNLIGTLTVRETISYS 152 (599)
Q Consensus 77 ~~i~~Ge~~aI~G~sGsGKSTLl~~L~G--~~~~~--~~~~G~I~~~g~~~~~~~~~~~yv~Q~~~l~~~lTV~e~l~~~ 152 (599)
+-+++|++++|+||||||||||++.|++ ..++. ....|.+++++.. .+ ...+-....
T Consensus 19 ggi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~~~---------------~~----~~~~~~~~~ 79 (243)
T 1n0w_A 19 GGIETGSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEG---------------TF----RPERLLAVA 79 (243)
T ss_dssp TSEETTSEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSS---------------CC----CHHHHHHHH
T ss_pred CCCcCCeEEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEECCC---------------Cc----CHHHHHHHH
Confidence 5689999999999999999999999999 44331 0014555554432 11 111111111
Q ss_pred hhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHH-HHHHHHHh--hCCCEEEEeCCCCCCCHH-
Q 007554 153 ARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRR-VSIALEIL--MRPRLLFLDEPTSGLDSA- 228 (599)
Q Consensus 153 ~~~~~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSGGerqR-v~ia~aL~--~~p~illlDEPtsgLD~~- 228 (599)
..+. .... ++++.+. .....++.+... +.-+.+++ .+|+++++|||++.+|+.
T Consensus 80 ~~~g----~~~~-------~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~lliiD~~~~~~~~~~ 136 (243)
T 1n0w_A 80 ERYG----LSGS-------DVLDNVA------------YARAFNTDHQTQLLYQASAMMVESRYALLIVDSATALYRTDY 136 (243)
T ss_dssp HHTT----CCHH-------HHHHTEE------------EEECCSHHHHHHHHHHHHHHHHHSCEEEEEEETSSGGGC---
T ss_pred HHcC----CCHH-------HHhhCeE------------EEecCCHHHHHHHHHHHHHHHhcCCceEEEEeCchHHHHHHh
Confidence 1111 1111 1111111 112345555433 33344444 489999999999999985
Q ss_pred ------H-----HHHHHHHHHHHHh-CCCEEEEEecCCchH------------------HHhccCeEEEEeCC
Q 007554 229 ------A-----AFFVTQTLRCLSR-DGRTVIASIHQPSSE------------------VFELFDRLYLLSGG 271 (599)
Q Consensus 229 ------~-----~~~i~~~L~~l~~-~g~tvi~~~H~p~~~------------------i~~~~D~v~~L~~G 271 (599)
. ...+++.|+++++ .|.|||+++|..... +...+|.+++|+.|
T Consensus 137 ~~~~~~~~r~~~~~~~~~~l~~~~~~~~~tvi~~~h~~~~~~~~~~~~~~~~~~~g~~~~~~~~d~vi~l~~~ 209 (243)
T 1n0w_A 137 SGRGELSARQMHLARFLRMLLRLADEFGVAVVITNQVVAQVDGAAMFAADPKKPIGGNIIAHASTTRLYLRKG 209 (243)
T ss_dssp ----CHHHHHHHHHHHHHHHHHHHHHHCCEEEEEC-------------------------CCTTCEEEEEEEC
T ss_pred cCCccHHHHHHHHHHHHHHHHHHHHHcCCEEEEEeeeeecCCCccccCCCcccCCccChhhhcCcEEEEEEEc
Confidence 3 3456666777765 489999999964321 22278999999865
No 128
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=99.41 E-value=4e-15 Score=139.05 Aligned_cols=79 Identities=18% Similarity=0.166 Sum_probs=65.5
Q ss_pred ccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCcCeEEEEcCCCCCCCCCCHHH
Q 007554 68 THNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLSFGTAAYVTQDDNLIGTLTVRE 147 (599)
Q Consensus 68 ~~~iL~~vs~~i~~Ge~~aI~G~sGsGKSTLl~~L~G~~~~~~~~~G~I~~~g~~~~~~~~~~~yv~Q~~~l~~~lTV~e 147 (599)
++.+++++|+++++|++++|+||||||||||+|+|+|.+ |. +|+|.++|.+.........+++|+..++ .+||.|
T Consensus 19 ~~~~l~~vsl~i~~Ge~v~L~G~nGaGKTTLlr~l~g~l-~~---~G~V~~~g~~i~~~~~~~~~~~q~~~l~-~ltv~e 93 (158)
T 1htw_A 19 KKFAEILLKLHTEKAIMVYLNGDLGAGKTTLTRGMLQGI-GH---QGNVKSPTYTLVEEYNIAGKMIYHFDLY-RLADPE 93 (158)
T ss_dssp HHHHHHHHHHCCSSCEEEEEECSTTSSHHHHHHHHHHHT-TC---CSCCCCCTTTCEEEEEETTEEEEEEECT-TCSCTT
T ss_pred HHHHHhccccccCCCCEEEEECCCCCCHHHHHHHHHHhC-CC---CCeEEECCEeeeeeccCCCcceeccccc-cCCcHH
Confidence 467899999999999999999999999999999999998 64 8999999975421111012799998888 899999
Q ss_pred HHHH
Q 007554 148 TISY 151 (599)
Q Consensus 148 ~l~~ 151 (599)
++.+
T Consensus 94 ~l~~ 97 (158)
T 1htw_A 94 ELEF 97 (158)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 9965
No 129
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=99.39 E-value=1.3e-14 Score=148.73 Aligned_cols=128 Identities=16% Similarity=0.174 Sum_probs=88.2
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCcCeEEEEcCCCCCCCCCCHHHHHHHHhh----c
Q 007554 80 EPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLSFGTAAYVTQDDNLIGTLTVRETISYSAR----L 155 (599)
Q Consensus 80 ~~Ge~~aI~G~sGsGKSTLl~~L~G~~~~~~~~~G~I~~~g~~~~~~~~~~~yv~Q~~~l~~~lTV~e~l~~~~~----~ 155 (599)
+++.+++|.|+||||||||.+.|++.+.+ .| . ..+.+.+|+||+.+++. ++++|+.++.. +
T Consensus 29 ~~~~ii~I~G~sGsGKSTla~~L~~~l~~----~g------~----~~~~~~iv~~D~f~~~~-~~~~~l~~~~~~~~l~ 93 (290)
T 1odf_A 29 KCPLFIFFSGPQGSGKSFTSIQIYNHLME----KY------G----GEKSIGYASIDDFYLTH-EDQLKLNEQFKNNKLL 93 (290)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHHHHH----HH------G----GGSCEEEEEGGGGBCCH-HHHHHHHHHTTTCGGG
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhhh----cC------C----CCceEEEeccccccCCh-HHHHHHhccccccchh
Confidence 46889999999999999999999998764 22 0 12345667999998876 89999988631 1
Q ss_pred c---CCCCCCHHHHHHHHHHHHHHcCCC--c--cccccccCcccCCCCHHHHHHHHHH--HHHhhCCCEEEEeCCCCCCC
Q 007554 156 R---LPDKMPWSEKRTLVERTIIEMGLQ--D--CADTVIGNWHLRGISGGERRRVSIA--LEILMRPRLLFLDEPTSGLD 226 (599)
Q Consensus 156 ~---~~~~~~~~~~~~~v~~~l~~l~L~--~--~~~~~vg~~~~~~LSGGerqRv~ia--~aL~~~p~illlDEPtsgLD 226 (599)
. .|.... .....+.++.+.-. . .....+. .+.+.+||||+||+.+| +++ +|+|+|+|||++++|
T Consensus 94 ~~~g~p~a~d----~~~l~~~l~~l~~g~~t~~~~~v~~p-~y~~~~sgGq~~R~~~a~~~~~--~~~IlIlEG~~~~ld 166 (290)
T 1odf_A 94 QGRGLPGTHD----MKLLQEVLNTIFNNNEHPDQDTVVLP-KYDKSQFKGEGDRCPTGQKIKL--PVDIFILEGWFLGFN 166 (290)
T ss_dssp SSSCSTTSBC----HHHHHHHHHHHTC------CCEEEEC-CEETTHHHHTCEECSSCEEEES--SCSEEEEEESSTTCC
T ss_pred hhccCcchhH----HHHHHHHHHHhhccCccccCcceeec-cCccccCCccccccccccceEc--CCCEEEEeCccccCC
Confidence 1 122222 23445566665332 0 0111122 13467999999999997 555 999999999999999
Q ss_pred HHH
Q 007554 227 SAA 229 (599)
Q Consensus 227 ~~~ 229 (599)
+..
T Consensus 167 ~~~ 169 (290)
T 1odf_A 167 PIL 169 (290)
T ss_dssp CCC
T ss_pred ccc
Confidence 864
No 130
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=99.39 E-value=2.2e-14 Score=155.63 Aligned_cols=152 Identities=13% Similarity=0.159 Sum_probs=103.2
Q ss_pred eeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC-----------CcCeEEEEcCCCCCC
Q 007554 72 LEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL-----------SFGTAAYVTQDDNLI 140 (599)
Q Consensus 72 L~~vs~~i~~Ge~~aI~G~sGsGKSTLl~~L~G~~~~~~~~~G~I~~~g~~~~~-----------~~~~~~yv~Q~~~l~ 140 (599)
-+++|+++++|++++|+|+||||||||+++|+|++.+. +|+|.++|.+... .++.++|++|+..++
T Consensus 283 ~~~Isl~i~~GeVI~LVGpNGSGKTTLl~~LAgll~~~---~G~V~l~g~D~~r~aa~eQL~~~~~r~~I~vV~Q~~~~~ 359 (503)
T 2yhs_A 283 DEPLNVEGKAPFVILMVGVNGVGKTTTIGKLARQFEQQ---GKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHTGAD 359 (503)
T ss_dssp BCCCCCCSCTTEEEEEECCTTSSHHHHHHHHHHHHHHT---TCCEEEECCCTTCHHHHHHHHHHHHHHTCCEECCSTTCC
T ss_pred CCCceeeccCCeEEEEECCCcccHHHHHHHHHHHhhhc---CCeEEEecCcccchhhHHHHHHHHHhcCceEEecccCcC
Confidence 46899999999999999999999999999999998774 7999998765321 124589999998888
Q ss_pred CCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHHHHHHHHHh-hCC-CEEEE
Q 007554 141 GTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEIL-MRP-RLLFL 218 (599)
Q Consensus 141 ~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSGGerqRv~ia~aL~-~~p-~illl 218 (599)
+.+||++++.++..-... .+ +++..|+.+... .+-.--+|++.+++++. ..| .+||.
T Consensus 360 p~~tV~e~l~~a~~~~~D----------vV--LIDTaGrl~~~~---------~lm~EL~kiv~iar~l~~~~P~evLLv 418 (503)
T 2yhs_A 360 SASVIFDAIQAAKARNID----------VL--IADTAGRLQNKS---------HLMEELKKIVRVMKKLDVEAPHEVMLT 418 (503)
T ss_dssp HHHHHHHHHHHHHHTTCS----------EE--EECCCCSCCCHH---------HHHHHHHHHHHHHHTTCTTCSSEEEEE
T ss_pred HHHHHHHHHHHHHhcCCC----------EE--EEeCCCccchhh---------hHHHHHHHHHHHHHHhccCCCCeeEEE
Confidence 888999999887431100 00 111112211110 11122357888888664 457 35655
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEecC
Q 007554 219 DEPTSGLDSAAAFFVTQTLRCLSR-DGRTVIASIHQ 253 (599)
Q Consensus 219 DEPtsgLD~~~~~~i~~~L~~l~~-~g~tvi~~~H~ 253 (599)
.++|+|.|.. +.++.+.+ -|.|.+++||-
T Consensus 419 LDattGq~al------~~ak~f~~~~~itgvIlTKL 448 (503)
T 2yhs_A 419 IDASTGQNAV------SQAKLFHEAVGLTGITLTKL 448 (503)
T ss_dssp EEGGGTHHHH------HHHHHHHHHTCCSEEEEECG
T ss_pred ecCcccHHHH------HHHHHHHhhcCCCEEEEEcC
Confidence 5588886543 33444543 47899999993
No 131
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=99.37 E-value=5.1e-14 Score=146.76 Aligned_cols=140 Identities=13% Similarity=0.047 Sum_probs=97.2
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCC-----------cCeEEEEcCCCCCCCCCCHHHH
Q 007554 80 EPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLS-----------FGTAAYVTQDDNLIGTLTVRET 148 (599)
Q Consensus 80 ~~Ge~~aI~G~sGsGKSTLl~~L~G~~~~~~~~~G~I~~~g~~~~~~-----------~~~~~yv~Q~~~l~~~lTV~e~ 148 (599)
++|++++|+||||||||||++.|+|++.+. +|+|.++|.+.... ...+.+++|+..++|.++|+||
T Consensus 127 ~~g~vi~lvG~nGaGKTTll~~Lag~l~~~---~g~V~l~g~D~~r~~a~eql~~~~~~~gv~~v~q~~~~~p~~~v~e~ 203 (328)
T 3e70_C 127 EKPYVIMFVGFNGSGKTTTIAKLANWLKNH---GFSVVIAASDTFRAGAIEQLEEHAKRIGVKVIKHSYGADPAAVAYDA 203 (328)
T ss_dssp CSSEEEEEECCTTSSHHHHHHHHHHHHHHT---TCCEEEEEECCSSTTHHHHHHHHHHHTTCEEECCCTTCCHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHhc---CCEEEEEeecccccchHHHHHHHHHHcCceEEeccccCCHHHHHHHH
Confidence 689999999999999999999999998875 89999999874321 1235699999999999999999
Q ss_pred HHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHH
Q 007554 149 ISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSA 228 (599)
Q Consensus 149 l~~~~~~~~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSGGerqRv~ia~aL~~~p~illlDEPtsgLD~~ 228 (599)
+.++....... .+++..|+.+..+.. .++.-.+++++..++.+++||.+|.
T Consensus 204 l~~~~~~~~d~------------vliDtaG~~~~~~~l------------~~eL~~i~ral~~de~llvLDa~t~----- 254 (328)
T 3e70_C 204 IQHAKARGIDV------------VLIDTAGRSETNRNL------------MDEMKKIARVTKPNLVIFVGDALAG----- 254 (328)
T ss_dssp HHHHHHHTCSE------------EEEEECCSCCTTTCH------------HHHHHHHHHHHCCSEEEEEEEGGGT-----
T ss_pred HHHHHhccchh------------hHHhhccchhHHHHH------------HHHHHHHHHHhcCCCCEEEEecHHH-----
Confidence 98763211000 011112222211111 1222348888888888888885543
Q ss_pred HHHHHHHHHHHHHh-CCCEEEEEecC
Q 007554 229 AAFFVTQTLRCLSR-DGRTVIASIHQ 253 (599)
Q Consensus 229 ~~~~i~~~L~~l~~-~g~tvi~~~H~ 253 (599)
.++++.++.+.+ .+.|+|++||.
T Consensus 255 --~~~~~~~~~~~~~~~it~iilTKl 278 (328)
T 3e70_C 255 --NAIVEQARQFNEAVKIDGIILTKL 278 (328)
T ss_dssp --THHHHHHHHHHHHSCCCEEEEECG
T ss_pred --HHHHHHHHHHHHhcCCCEEEEeCc
Confidence 455666677764 58999999996
No 132
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=99.36 E-value=4e-13 Score=124.14 Aligned_cols=98 Identities=19% Similarity=0.313 Sum_probs=72.3
Q ss_pred ceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCcCeEEEEcCCCCCCCCCCHHHHH
Q 007554 70 NVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLSFGTAAYVTQDDNLIGTLTVRETI 149 (599)
Q Consensus 70 ~iL~~vs~~i~~Ge~~aI~G~sGsGKSTLl~~L~G~~~~~~~~~G~I~~~g~~~~~~~~~~~yv~Q~~~l~~~lTV~e~l 149 (599)
.+|+++ +|+.++|+||||+|||||+++|++...+ +| ..+.|+...+....
T Consensus 29 ~~l~~~-----~g~~~~l~G~~G~GKTtL~~~i~~~~~~----~g-------------~~~~~~~~~~~~~~-------- 78 (149)
T 2kjq_A 29 YVLRHK-----HGQFIYVWGEEGAGKSHLLQAWVAQALE----AG-------------KNAAYIDAASMPLT-------- 78 (149)
T ss_dssp HHCCCC-----CCSEEEEESSSTTTTCHHHHHHHHHHHT----TT-------------CCEEEEETTTSCCC--------
T ss_pred HHHHhc-----CCCEEEEECCCCCCHHHHHHHHHHHHHh----cC-------------CcEEEEcHHHhhHH--------
Confidence 356666 8999999999999999999999998754 24 11234433221100
Q ss_pred HHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHH
Q 007554 150 SYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAA 229 (599)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSGGerqRv~ia~aL~~~p~illlDEPtsgLD~~~ 229 (599)
+++.+|++|++|||++ +|...
T Consensus 79 ----------------------------------------------------------~~~~~~~lLilDE~~~-~~~~~ 99 (149)
T 2kjq_A 79 ----------------------------------------------------------DAAFEAEYLAVDQVEK-LGNEE 99 (149)
T ss_dssp ----------------------------------------------------------GGGGGCSEEEEESTTC-CCSHH
T ss_pred ----------------------------------------------------------HHHhCCCEEEEeCccc-cChHH
Confidence 1245799999999998 66555
Q ss_pred HHHHHHHHHHHHhCCCE-EEEEecCCch
Q 007554 230 AFFVTQTLRCLSRDGRT-VIASIHQPSS 256 (599)
Q Consensus 230 ~~~i~~~L~~l~~~g~t-vi~~~H~p~~ 256 (599)
+..+.+.+.++.++|++ +|+++|.+..
T Consensus 100 ~~~l~~li~~~~~~g~~~iiits~~~p~ 127 (149)
T 2kjq_A 100 QALLFSIFNRFRNSGKGFLLLGSEYTPQ 127 (149)
T ss_dssp HHHHHHHHHHHHHHTCCEEEEEESSCTT
T ss_pred HHHHHHHHHHHHHcCCcEEEEECCCCHH
Confidence 88899999998877887 8899997543
No 133
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=99.36 E-value=2.2e-13 Score=129.15 Aligned_cols=48 Identities=13% Similarity=0.164 Sum_probs=42.8
Q ss_pred hhCCCEEEEeCCCC-CCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchH
Q 007554 210 LMRPRLLFLDEPTS-GLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSE 257 (599)
Q Consensus 210 ~~~p~illlDEPts-gLD~~~~~~i~~~L~~l~~~g~tvi~~~H~p~~~ 257 (599)
+.+|++|++|||++ ++|+..+..+.+.+.+..++|+++|++||.+..+
T Consensus 98 ~~~~~llilDE~~~~~~~~~~~~~l~~ll~~~~~~~~~ii~tsn~~~~~ 146 (180)
T 3ec2_A 98 VLNSPVLVLDDLGSERLSDWQRELISYIITYRYNNLKSTIITTNYSLQR 146 (180)
T ss_dssp HHTCSEEEEETCSSSCCCHHHHHHHHHHHHHHHHTTCEEEEECCCCSCC
T ss_pred hcCCCEEEEeCCCCCcCCHHHHHHHHHHHHHHHHcCCCEEEEcCCChhH
Confidence 45999999999995 9999999999999998887899999999997643
No 134
>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12
Probab=99.35 E-value=1.7e-12 Score=140.31 Aligned_cols=75 Identities=23% Similarity=0.236 Sum_probs=68.6
Q ss_pred CCCCHHHHHHHHHHHHHh----hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhccCeEEEE
Q 007554 193 RGISGGERRRVSIALEIL----MRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLL 268 (599)
Q Consensus 193 ~~LSGGerqRv~ia~aL~----~~p~illlDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~p~~~i~~~~D~v~~L 268 (599)
..||||||||++||++|+ .+|+++||||||++||+..+..+.+.|+++.++|.++|++||++ .....||+++.+
T Consensus 332 ~~lS~Gq~~~~~la~~la~~~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~~~~~~~ii~th~~--~~~~~~d~~~~~ 409 (430)
T 1w1w_A 332 EYLSGGEKTVAALALLFAINSYQPSPFFVLDEVDAALDITNVQRIAAYIRRHRNPDLQFIVISLKN--TMFEKSDALVGV 409 (430)
T ss_dssp GGSCHHHHHHHHHHHHHHHHTSSCCSEEEESSTTTTCCHHHHHHHHHHHHHHCBTTBEEEEECSCH--HHHTTCSEEEEE
T ss_pred ccCCcchHHHHHHHHHHHHhcCCCCCEEEeCCCcccCCHHHHHHHHHHHHHHhcCCCEEEEEECCH--HHHHhCCEEEEE
Confidence 359999999999999999 58999999999999999999999999999876688999999994 467889999999
Q ss_pred e
Q 007554 269 S 269 (599)
Q Consensus 269 ~ 269 (599)
.
T Consensus 410 ~ 410 (430)
T 1w1w_A 410 Y 410 (430)
T ss_dssp E
T ss_pred E
Confidence 6
No 135
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1
Probab=99.34 E-value=3.3e-14 Score=152.65 Aligned_cols=170 Identities=15% Similarity=0.076 Sum_probs=96.6
Q ss_pred eeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCcCeEEEEcCCCCCCCCCCHHHHHHH
Q 007554 72 LEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLSFGTAAYVTQDDNLIGTLTVRETISY 151 (599)
Q Consensus 72 L~~vs~~i~~Ge~~aI~G~sGsGKSTLl~~L~G~~~~~~~~~G~I~~~g~~~~~~~~~~~yv~Q~~~l~~~lTV~e~l~~ 151 (599)
-++++++++.|+.++|+|+|||||||||++|+|..+ .+.+.+.......+++|.+++. ..+++.|+.-+
T Consensus 147 ~~~i~lelk~g~~VgLVG~~gAGKSTLL~~Lsg~~~---------~i~~~~ftTl~p~~G~V~~~~~--~~~~l~DtpGl 215 (416)
T 1udx_A 147 KRRLRLELMLIADVGLVGYPNAGKSSLLAAMTRAHP---------KIAPYPFTTLSPNLGVVEVSEE--ERFTLADIPGI 215 (416)
T ss_dssp EEEEEEEECCSCSEEEECCGGGCHHHHHHHHCSSCC---------EECCCTTCSSCCEEEEEECSSS--CEEEEEECCCC
T ss_pred EeeeeeEEcCCCEEEEECCCCCcHHHHHHHHHcCCc---------cccCcccceecceeeEEEecCc--ceEEEEecccc
Confidence 479999999999999999999999999999998742 1223222111223455554430 00111111100
Q ss_pred HhhccCCCCCCHHHHH--HHHHHHHHHcCCCccccccccCcccCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHH
Q 007554 152 SARLRLPDKMPWSEKR--TLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAA 229 (599)
Q Consensus 152 ~~~~~~~~~~~~~~~~--~~v~~~l~~l~L~~~~~~~vg~~~~~~LSGGerqRv~ia~aL~~~p~illlDEPtsgLD~~~ 229 (599)
...............+ ++++.++..+++. +.....+|+|++||+.++++|+.+|.++++ +++|...
T Consensus 216 i~~a~~~~~L~~~fl~~~era~~lL~vvDls--------~~~~~~ls~g~~el~~la~aL~~~P~ILVl----NKlDl~~ 283 (416)
T 1udx_A 216 IEGASEGKGLGLEFLRHIARTRVLLYVLDAA--------DEPLKTLETLRKEVGAYDPALLRRPSLVAL----NKVDLLE 283 (416)
T ss_dssp CCCGGGSCCSCHHHHHHHTSSSEEEEEEETT--------SCHHHHHHHHHHHHHHHCHHHHHSCEEEEE----ECCTTSC
T ss_pred ccchhhhhhhhHHHHHHHHHHHhhhEEeCCc--------cCCHHHHHHHHHHHHHHhHHhhcCCEEEEE----ECCChhh
Confidence 0000000011111000 0111122222222 223456999999999999999999999999 9999987
Q ss_pred HHHHHHHHHHHH-hCCCEEEEEecCCchHHHhccCeE
Q 007554 230 AFFVTQTLRCLS-RDGRTVIASIHQPSSEVFELFDRL 265 (599)
Q Consensus 230 ~~~i~~~L~~l~-~~g~tvi~~~H~p~~~i~~~~D~v 265 (599)
+ ..++.+++.. +.|.+++.+|..-...+.++++.+
T Consensus 284 ~-~~~~~l~~~l~~~g~~vi~iSA~~g~gi~eL~~~i 319 (416)
T 1udx_A 284 E-EAVKALADALAREGLAVLPVSALTGAGLPALKEAL 319 (416)
T ss_dssp H-HHHHHHHHHHHTTTSCEEECCTTTCTTHHHHHHHH
T ss_pred H-HHHHHHHHHHHhcCCeEEEEECCCccCHHHHHHHH
Confidence 7 4555555443 457776665543244455555443
No 136
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=99.34 E-value=3.4e-15 Score=156.52 Aligned_cols=172 Identities=18% Similarity=0.141 Sum_probs=111.5
Q ss_pred EEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC------
Q 007554 52 LTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL------ 125 (599)
Q Consensus 52 l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~G~sGsGKSTLl~~L~G~~~~~~~~~G~I~~~g~~~~~------ 125 (599)
++.+|+++.+ +.+.+|+++|+++++|++++|+||||||||||+|+|+|.+.+. +|+|.+.|.+...
T Consensus 30 ie~~~~~~~~-----~~~~~l~~i~~~~~~g~~v~i~G~~GaGKSTLl~~l~g~~~~~---~g~v~i~~~d~~~~~~~~~ 101 (337)
T 2qm8_A 30 AESRRADHRA-----AVRDLIDAVLPQTGRAIRVGITGVPGVGKSTTIDALGSLLTAA---GHKVAVLAVDPSSTRTGGS 101 (337)
T ss_dssp HTCSSHHHHH-----HHHHHHHHHGGGCCCSEEEEEECCTTSCHHHHHHHHHHHHHHT---TCCEEEEEECGGGGSSCCC
T ss_pred HeeCCccccc-----ChHHHHHhCCcccCCCeEEEEECCCCCCHHHHHHHHHHhhhhC---CCEEEEEEEcCcccccccc
Confidence 3444554443 2357999999999999999999999999999999999998774 8999999876421
Q ss_pred ---CcCeEEEEcCCCCCCCCC------------CHHHHHHHHh-----------------------------hccCCCCC
Q 007554 126 ---SFGTAAYVTQDDNLIGTL------------TVRETISYSA-----------------------------RLRLPDKM 161 (599)
Q Consensus 126 ---~~~~~~yv~Q~~~l~~~l------------TV~e~l~~~~-----------------------------~~~~~~~~ 161 (599)
....++|++|++.++... +++|.+.... .+..+.
T Consensus 102 ~~~~~~~i~~v~q~~~~~~~~~~~~~~l~G~tr~~~e~~~~~~~~~~~~iliDT~Gi~~~~~~v~~~~d~vl~v~d~~-- 179 (337)
T 2qm8_A 102 ILGDKTRMARLAIDRNAFIRPSPSSGTLGGVAAKTRETMLLCEAAGFDVILVETVGVGQSETAVADLTDFFLVLMLPG-- 179 (337)
T ss_dssp SSCCGGGSTTGGGCTTEEEECCCCCSSHHHHHHHHHHHHHHHHHTTCCEEEEEECSSSSCHHHHHTTSSEEEEEECSC--
T ss_pred hHHHhhhheeeccCcccccccCcccccccchHHHHHHHHHHHhcCCCCEEEEECCCCCcchhhHHhhCCEEEEEEcCC--
Confidence 134578999998776532 1233321100 000000
Q ss_pred CHHHHH---HHHHHHHHHcCCCccccccccCcccCCCCHHHHHHHHHHHHHhh------CCCEEEEeCCCCCCCHHHHHH
Q 007554 162 PWSEKR---TLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILM------RPRLLFLDEPTSGLDSAAAFF 232 (599)
Q Consensus 162 ~~~~~~---~~v~~~l~~l~L~~~~~~~vg~~~~~~LSGGerqRv~ia~aL~~------~p~illlDEPtsgLD~~~~~~ 232 (599)
...+.+ +.+.+....+.+ +..|.. ..+.+|+|++|++..+++++. +|++++ ||++|.....+
T Consensus 180 ~~~~~~~i~~~i~~~~~ivvl-NK~Dl~----~~~~~s~~~~~~l~~a~~l~~~~~~~~~~~vl~----~Sal~g~gi~~ 250 (337)
T 2qm8_A 180 AGDELQGIKKGIFELADMIAV-NKADDG----DGERRASAAASEYRAALHILTPPSATWTPPVVT----ISGLHGKGLDS 250 (337)
T ss_dssp C------CCTTHHHHCSEEEE-ECCSTT----CCHHHHHHHHHHHHHHHTTBCCSBTTBCCCEEE----EBTTTTBSHHH
T ss_pred CcccHHHHHHHHhccccEEEE-Echhcc----CchhHHHHHHHHHHHHHHhccccccCCCCCEEE----EeCCCCCCHHH
Confidence 000000 001111111111 111210 123579999999999999987 688877 99999999999
Q ss_pred HHHHHHHHHh
Q 007554 233 VTQTLRCLSR 242 (599)
Q Consensus 233 i~~~L~~l~~ 242 (599)
+.+.|.++..
T Consensus 251 L~~~I~~~~~ 260 (337)
T 2qm8_A 251 LWSRIEDHRS 260 (337)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999988653
No 137
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=99.31 E-value=9.4e-14 Score=143.33 Aligned_cols=120 Identities=19% Similarity=0.229 Sum_probs=81.4
Q ss_pred EeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEE---CCEeCCCC-----cCeEEEEcCCCCCC-----CCCCH
Q 007554 79 AEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILL---NGHKTKLS-----FGTAAYVTQDDNLI-----GTLTV 145 (599)
Q Consensus 79 i~~Ge~~aI~G~sGsGKSTLl~~L~G~~~~~~~~~G~I~~---~g~~~~~~-----~~~~~yv~Q~~~l~-----~~lTV 145 (599)
+.+|++++|+||||||||||+|+|+ ...+. +|+|.+ +|++.... .+.+|||+|++.+. +.+|+
T Consensus 162 ~l~G~i~~l~G~sG~GKSTLln~l~-~~~~~---~G~i~~~~~~G~~~t~~~~~~~~~~~g~v~d~pg~~~~~l~~~lt~ 237 (302)
T 2yv5_A 162 YLEGFICILAGPSGVGKSSILSRLT-GEELR---TQEVSEKTERGRHTTTGVRLIPFGKGSFVGDTPGFSKVEATMFVKP 237 (302)
T ss_dssp HTTTCEEEEECSTTSSHHHHHHHHH-SCCCC---CSCC---------CCCCEEEEEETTTEEEESSCCCSSCCGGGTSCG
T ss_pred hccCcEEEEECCCCCCHHHHHHHHH-HhhCc---ccccccccCCCCCceeeEEEEEcCCCcEEEECcCcCcCcccccCCH
Confidence 3469999999999999999999999 88775 899999 88754321 12479999998553 67899
Q ss_pred HHHH--HHH----hhccCCCCCCHHHHHHHHHHHHHHcCCCc-cccccccCcccCCCCHHHHHHHHHHHH
Q 007554 146 RETI--SYS----ARLRLPDKMPWSEKRTLVERTIIEMGLQD-CADTVIGNWHLRGISGGERRRVSIALE 208 (599)
Q Consensus 146 ~e~l--~~~----~~~~~~~~~~~~~~~~~v~~~l~~l~L~~-~~~~~vg~~~~~~LSGGerqRv~ia~a 208 (599)
|++ .|. ..++........+...++.++++.++|.+ .++.. ++.|||.++|++.|||+
T Consensus 238 -e~l~~~f~~~~~~~c~~~~~~~~~e~~~~v~~~l~~~~L~~~~~~~~-----~~~ls~~~~R~~~~~~~ 301 (302)
T 2yv5_A 238 -REVRNYFREFLRYQCKYPDCTHTNEPGCAVKEAVKNGEISCERYKSY-----LKIIKVYLEEIKELCRE 301 (302)
T ss_dssp -GGGGGGCGGGHHHHHHSTTCCSSSCTTCHHHHHHHTTSSCHHHHHHH-----HHHTTCCCTTHHHHSSC
T ss_pred -HHHHHHHHHHHHccCCCCCCCCCCCCCCHHHHHHHcCCCCHHHHHHH-----HHHHHHHHHHHHHHhcc
Confidence 888 443 11111111112233456889999999986 55553 45699988999999873
No 138
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=99.29 E-value=1.6e-15 Score=163.09 Aligned_cols=133 Identities=20% Similarity=0.203 Sum_probs=90.3
Q ss_pred ceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCC---------cCeEEEEc------
Q 007554 70 NVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLS---------FGTAAYVT------ 134 (599)
Q Consensus 70 ~iL~~vs~~i~~Ge~~aI~G~sGsGKSTLl~~L~G~~~~~~~~~G~I~~~g~~~~~~---------~~~~~yv~------ 134 (599)
.+|+++ + .++|++++|+|||||||||||++|+|.+.+. +|+|.+.|.+.... ...+++.+
T Consensus 157 ~~L~~l-~-~~~ggii~I~GpnGSGKTTlL~allg~l~~~---~g~I~~~ed~ie~~~~~~~q~~v~~~~g~~f~~~lr~ 231 (418)
T 1p9r_A 157 DNFRRL-I-KRPHGIILVTGPTGSGKSTTLYAGLQELNSS---ERNILTVEDPIEFDIDGIGQTQVNPRVDMTFARGLRA 231 (418)
T ss_dssp HHHHHH-H-TSSSEEEEEECSTTSCHHHHHHHHHHHHCCT---TSCEEEEESSCCSCCSSSEEEECBGGGTBCHHHHHHH
T ss_pred HHHHHH-H-HhcCCeEEEECCCCCCHHHHHHHHHhhcCCC---CCEEEEecccchhccCCcceEEEccccCcCHHHHHHH
Confidence 367777 4 3799999999999999999999999998875 89999988764321 12234544
Q ss_pred ---CCCCC--CCC----CCHHHHHHHHhhccCC-CCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHHHH
Q 007554 135 ---QDDNL--IGT----LTVRETISYSARLRLP-DKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVS 204 (599)
Q Consensus 135 ---Q~~~l--~~~----lTV~e~l~~~~~~~~~-~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSGGerqRv~ 204 (599)
|++.. ++. .|+++++.++..-+.. .......... +.+.+..+|+.+.. .+..|||||+||
T Consensus 232 ~Lrq~pd~i~vgEiRd~et~~~~l~a~~tGhlv~~tlh~~~~~~-~i~rL~~lgl~~~~-------~~~~LSgg~~QR-- 301 (418)
T 1p9r_A 232 ILRQDPDVVMVGEIRDLETAQIAVQASLTGHLVMSTLHTNTAVG-AVTRLRDMGIEPFL-------ISSSLLGVLAQR-- 301 (418)
T ss_dssp HGGGCCSEEEESCCCSHHHHHHHHHHHHTTCEEEEEECCSSSHH-HHHHHHHHTCCHHH-------HHHHEEEEEEEE--
T ss_pred HhccCCCeEEEcCcCCHHHHHHHHHHHHhCCCcccccchhhHHH-HHHHHHHcCCcHHH-------HHHHHHHHHHHH--
Confidence 88765 344 5899998876421100 0000001112 22346678887542 234699999999
Q ss_pred HHHHHhhCCCEEE
Q 007554 205 IALEILMRPRLLF 217 (599)
Q Consensus 205 ia~aL~~~p~ill 217 (599)
||++|+.+|++..
T Consensus 302 LaraL~~~p~~~~ 314 (418)
T 1p9r_A 302 LVRTLCPDCKEPY 314 (418)
T ss_dssp EEEEECTTTCEEE
T ss_pred hhhhhcCCCCccC
Confidence 9999999999875
No 139
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.28 E-value=2.9e-12 Score=134.21 Aligned_cols=134 Identities=18% Similarity=0.157 Sum_probs=75.4
Q ss_pred EEEECCCCCcHHHHHHHHHc-CCCCCCCceeEEEECCEeCCC---CcCeEEEEcCCCCCCCCCCHHHHHHHHhhccCCCC
Q 007554 85 TALMGPSGSGKSTLLDALSS-RLASNAFLSGTILLNGHKTKL---SFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDK 160 (599)
Q Consensus 85 ~aI~G~sGsGKSTLl~~L~G-~~~~~~~~~G~I~~~g~~~~~---~~~~~~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~ 160 (599)
+.|.||||+|||||+++|+| +..+. .|++.++|.+... ....+++++|.+.+.-..+ + . ..
T Consensus 39 ~ll~Gp~G~GKTtl~~~la~~l~~~~---~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~-------~---~~ 103 (354)
T 1sxj_E 39 LLLYGPNGTGKKTRCMALLESIFGPG---VYRLKIDVRQFVTASNRKLELNVVSSPYHLEITPS--D-------M---GN 103 (354)
T ss_dssp EEEECSTTSSHHHHHHTHHHHHSCTT---CCC------------------CCEECSSEEEECCC----------------
T ss_pred EEEECCCCCCHHHHHHHHHHHHcCCC---CCeEEecceeecccccccceeeeecccceEEecHh--h-------c---CC
Confidence 89999999999999999999 66664 7999999865321 1345778888764321100 0 0 00
Q ss_pred CCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHH
Q 007554 161 MPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCL 240 (599)
Q Consensus 161 ~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSGGerqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~L~~l 240 (599)
.... .+.+.++.+......+..+ .+|| +..+|+++++|||++ ||+.++..+.+.|.+.
T Consensus 104 ~~~~----~~~~~i~~~~~~~~~~~~~------~ls~-----------l~~~~~vlilDE~~~-L~~~~~~~L~~~le~~ 161 (354)
T 1sxj_E 104 NDRI----VIQELLKEVAQMEQVDFQD------SKDG-----------LAHRYKCVIINEANS-LTKDAQAALRRTMEKY 161 (354)
T ss_dssp CCHH----HHHHHHHHHTTTTC-----------------------------CCEEEEEECTTS-SCHHHHHHHHHHHHHS
T ss_pred cchH----HHHHHHHHHHHhccccccc------cccc-----------cCCCCeEEEEeCccc-cCHHHHHHHHHHHHhh
Confidence 0111 1233333332111111111 3566 788999999999999 9999999999999886
Q ss_pred HhCCCEEEEEecCCch
Q 007554 241 SRDGRTVIASIHQPSS 256 (599)
Q Consensus 241 ~~~g~tvi~~~H~p~~ 256 (599)
. .+.++|+++|++..
T Consensus 162 ~-~~~~~Il~t~~~~~ 176 (354)
T 1sxj_E 162 S-KNIRLIMVCDSMSP 176 (354)
T ss_dssp T-TTEEEEEEESCSCS
T ss_pred c-CCCEEEEEeCCHHH
Confidence 4 46899999999753
No 140
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=99.28 E-value=1.8e-14 Score=140.21 Aligned_cols=164 Identities=23% Similarity=0.193 Sum_probs=92.4
Q ss_pred EeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCcCeEEEEcCCCCCCCCCCHHHHHHHHhhccCC
Q 007554 79 AEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLSFGTAAYVTQDDNLIGTLTVRETISYSARLRLP 158 (599)
Q Consensus 79 i~~Ge~~aI~G~sGsGKSTLl~~L~G~~~~~~~~~G~I~~~g~~~~~~~~~~~yv~Q~~~l~~~lTV~e~l~~~~~~~~~ 158 (599)
.++|++++|+||||||||||+++|+|++++. | ..+++|++++..+.. +..+++........+
T Consensus 19 ~~~g~~v~I~G~sGsGKSTl~~~l~~~~~~~----g-------------~~~g~v~~d~~~~~~-~~~~~~~~~~~~~~~ 80 (208)
T 3c8u_A 19 QPGRQLVALSGAPGSGKSTLSNPLAAALSAQ----G-------------LPAEVVPMDGFHLDN-RLLEPRGLLPRKGAP 80 (208)
T ss_dssp CCSCEEEEEECCTTSCTHHHHHHHHHHHHHT----T-------------CCEEEEESGGGBCCH-HHHGGGTCGGGTTSG
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHhhc----C-------------CceEEEecCCCcCCH-HHHHHhcccccCCCC
Confidence 5789999999999999999999999998752 2 135666666554432 222222100000011
Q ss_pred CCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHHHHHH-HHHhhCCCEEEEeCCCCCCCHHHHHHHHHHH
Q 007554 159 DKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIA-LEILMRPRLLFLDEPTSGLDSAAAFFVTQTL 237 (599)
Q Consensus 159 ~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSGGerqRv~ia-~aL~~~p~illlDEPtsgLD~~~~~~i~~~L 237 (599)
...... ...+.+..+...+..+..+.+ ...++|+||+||++++ ++++.++.++++|||..
T Consensus 81 ~~~~~~----~~~~~l~~l~~~~~i~~p~~d-~~~~~~~g~~~~v~~~~~~~i~eg~~~l~de~~~-------------- 141 (208)
T 3c8u_A 81 ETFDFE----GFQRLCHALKHQERVIYPLFD-RARDIAIAGAAEVGPECRVAIIEGNYLLFDAPGW-------------- 141 (208)
T ss_dssp GGBCHH----HHHHHHHHHHHCSCEEEEEEE-TTTTEEEEEEEEECTTCCEEEEEESSTTBCSTTG--------------
T ss_pred chhhHH----HHHHHHHHHhcCCceecccCC-ccccCCCCCceEEcCCCcEEEECCceeccCCchh--------------
Confidence 111111 122233332222222333333 2345799999999998 78888888888888741
Q ss_pred HHHHhCCCEEEEEecCCchHHHhccCeEEEEeCCeEEEecChhhHHHHH
Q 007554 238 RCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAFEFF 286 (599)
Q Consensus 238 ~~l~~~g~tvi~~~H~p~~~i~~~~D~v~~L~~G~iv~~G~~~~~~~~f 286 (599)
.++.+.--.++.+.++....+.+...|. +..|+ +.+++...+
T Consensus 142 ~~l~~~~d~~i~vd~~~~~~~~R~~~R~--~~~g~-----t~~~~~~~~ 183 (208)
T 3c8u_A 142 RDLTAIWDVSIRLEVPMADLEARLVQRW--LDHGL-----NHDAAVARA 183 (208)
T ss_dssp GGGGGTCSEEEEECCCHHHHHHHHHHHH--HHTTC-----CHHHHHHHH
T ss_pred HHHHHhcCEEEEEeCCHHHHHHHHHHHH--HhcCC-----CHHHHHHHH
Confidence 1122222366777776544456666662 34454 555555543
No 141
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=99.26 E-value=1.1e-14 Score=160.35 Aligned_cols=175 Identities=17% Similarity=0.184 Sum_probs=109.0
Q ss_pred cceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEe-CCC-CcCeEEEEcCCCCCCCCCCHH
Q 007554 69 HNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHK-TKL-SFGTAAYVTQDDNLIGTLTVR 146 (599)
Q Consensus 69 ~~iL~~vs~~i~~Ge~~aI~G~sGsGKSTLl~~L~G~~~~~~~~~G~I~~~g~~-~~~-~~~~~~yv~Q~~~l~~~lTV~ 146 (599)
..+++++++.+++|+.++|+|||||||||||++|+|+++++ +|.|+++|.+ ... ....++++.|........|..
T Consensus 247 ~~~l~~l~~~v~~g~~i~I~GptGSGKTTlL~aL~~~i~~~---~giitied~~E~~~~~~~~v~~~~r~~~~~~~~~~~ 323 (511)
T 2oap_1 247 SGVLAYLWLAIEHKFSAIVVGETASGKTTTLNAIMMFIPPD---AKVVSIEDTREIKLYHENWIAEVTRTGMGEGEIDMY 323 (511)
T ss_dssp HHHHHHHHHHHHTTCCEEEEESTTSSHHHHHHHHGGGSCTT---CCEEEEESSCCCCCCCSSEEEEECBCCSSSCCBCHH
T ss_pred HHHHHHHHHHHhCCCEEEEECCCCCCHHHHHHHHHhhCCCC---CCEEEEcCcccccCCCCCeEEEEeecccccCCcCHH
Confidence 45789999999999999999999999999999999999875 8999999864 221 123466666654322234454
Q ss_pred HHHHHHhhccCC-----CCCCHHHHHH------------------HHHHHHHHcCC-----Cc----cccccccCcccCC
Q 007554 147 ETISYSARLRLP-----DKMPWSEKRT------------------LVERTIIEMGL-----QD----CADTVIGNWHLRG 194 (599)
Q Consensus 147 e~l~~~~~~~~~-----~~~~~~~~~~------------------~v~~~l~~l~L-----~~----~~~~~vg~~~~~~ 194 (599)
+.+..+.+.+ | ..+...+... .+.++++++.. .. ..+..+ .....
T Consensus 324 ~~l~~~LR~~-PD~iivgEir~~E~~~~l~a~~tGh~~~sT~Ha~~~~~~l~Rl~~~~~~v~~~l~~~l~~vi--~~~~~ 400 (511)
T 2oap_1 324 DLLRAALRQR-PDYIIVGEVRGREAQTLFQAMSTGHASYSTLHAGDINQMVYRLESEPLKVPRSMLQFLDIAL--VQTMW 400 (511)
T ss_dssp HHHHTTGGGC-CSEEEESCCCSTHHHHHHHHHHTTCEEEEEEECSSHHHHHHHHHSTTTCCCGGGGGGCCEEE--EEEEE
T ss_pred HHHHHhhccC-CCeEEeCCcCHHHHHHHHHhhcCCCCcccccccCCHHHHHHHHHhcccccHHHHHhhccEEE--EEEEE
Confidence 4444332211 1 0111111100 12223333322 11 111111 12235
Q ss_pred CCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEE--EecCCchHHHhcc
Q 007554 195 ISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIA--SIHQPSSEVFELF 262 (599)
Q Consensus 195 LSGGerqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~--~~H~p~~~i~~~~ 262 (599)
+|||||||.+++. + | |+|||+.....+.+.|.++.++|+|+++ ++|+. .++.+.+
T Consensus 401 ~s~G~~~R~~~ai----------~-E-~~GlDp~~~~~~~~~l~~~~~~~~tii~~~~sH~l-~ei~~~~ 457 (511)
T 2oap_1 401 VRGNTRLRRTKEV----------N-E-ILGIDPVDKNLLVNQFVKWDPKEDKHIEVSMPKKL-EKMADFL 457 (511)
T ss_dssp ESSSCEEEEEEEE----------E-E-EEECCSSSSCCEEEEEEEEETTTTEEEECSCCTHH-HHHHHHH
T ss_pred EeCCCceEEEEEE----------E-E-EcCcccCCCeEEEEEeEEEcccCCEEEEcccHHHH-HHHHHHc
Confidence 7999999977641 2 7 9999998887777777777666888875 88884 4565555
No 142
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=99.22 E-value=2.8e-11 Score=129.28 Aligned_cols=154 Identities=16% Similarity=0.196 Sum_probs=87.9
Q ss_pred EEEeCCeEEEEECCCCCcHHHHHHHH--HcCCCCCC--CceeEEEECCEeCCCCcCeEEEEcCCCCCCCCCCHHHHHHHH
Q 007554 77 GYAEPGTLTALMGPSGSGKSTLLDAL--SSRLASNA--FLSGTILLNGHKTKLSFGTAAYVTQDDNLIGTLTVRETISYS 152 (599)
Q Consensus 77 ~~i~~Ge~~aI~G~sGsGKSTLl~~L--~G~~~~~~--~~~G~I~~~g~~~~~~~~~~~yv~Q~~~l~~~lTV~e~l~~~ 152 (599)
+-+++|++++|+||||||||||++.| .+..++.. ...+.++++++ +.+ .........
T Consensus 173 GGI~~Gei~~I~G~sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyid~E---------------~~~----~~~rl~~~a 233 (400)
T 3lda_A 173 GGVETGSITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTE---------------GTF----RPVRLVSIA 233 (400)
T ss_dssp TSEETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESS---------------SCC----CHHHHHHHH
T ss_pred CCcCCCcEEEEEcCCCCChHHHHHHHHHHhccCcccCCCCCcEEEEeCC---------------Ccc----CHHHHHHHH
Confidence 56899999999999999999999954 46554420 01234554443 111 111111111
Q ss_pred hhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCH-HHHHHHHHHHHHh--hCCCEEEEeCCCCCCCHHH
Q 007554 153 ARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISG-GERRRVSIALEIL--MRPRLLFLDEPTSGLDSAA 229 (599)
Q Consensus 153 ~~~~~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSG-GerqRv~ia~aL~--~~p~illlDEPtsgLD~~~ 229 (599)
.++. +.. +.+++.+ .+. +..++ .+.+.+.-+.+++ .+|+++++||||+.+|+..
T Consensus 234 ~~~g----l~~-------~~vleni--------~~~----~~~~~~~~~~~l~~~~~~l~~~~~~llVIDs~t~~~~~~~ 290 (400)
T 3lda_A 234 QRFG----LDP-------DDALNNV--------AYA----RAYNADHQLRLLDAAAQMMSESRFSLIVVDSVMALYRTDF 290 (400)
T ss_dssp HHTT----CCH-------HHHHHTE--------EEE----ECCSHHHHHHHHHHHHHHHHHSCEEEEEEETGGGGCC---
T ss_pred HHcC----CCh-------HhHhhcE--------EEe----ccCChHHHHHHHHHHHHHHHhcCCceEEecchhhhCchhh
Confidence 1111 111 0111111 111 11222 2233444444443 4699999999999999754
Q ss_pred H------------HHHHHHHHHHHh-CCCEEEEEecCCc------------------hHHHhccCeEEEEeCCe
Q 007554 230 A------------FFVTQTLRCLSR-DGRTVIASIHQPS------------------SEVFELFDRLYLLSGGK 272 (599)
Q Consensus 230 ~------------~~i~~~L~~l~~-~g~tvi~~~H~p~------------------~~i~~~~D~v~~L~~G~ 272 (599)
. .++++.|+++++ .|.|||+++|... ..+...+|.++.|++|+
T Consensus 291 sg~g~l~~Rq~~l~~il~~L~~lake~gitVIlv~Hv~~~~~g~~~~~g~~~~p~gg~~l~~~ad~vl~L~~~~ 364 (400)
T 3lda_A 291 SGRGELSARQMHLAKFMRALQRLADQFGVAVVVTNQVVAQVDGGMAFNPDPKKPIGGNIMAYSSTTRLGFKKGK 364 (400)
T ss_dssp ---CCHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEEC--------------------CHHHHHCSEEEEEEECS
T ss_pred cCccchHHHHHHHHHHHHHHHHHHHHcCCEEEEEEeecccCCccccccCCCccCCchhHHHHhcceEEEEEecC
Confidence 3 678888998886 4999999999821 22456789999998653
No 143
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=99.15 E-value=1.3e-13 Score=146.74 Aligned_cols=170 Identities=16% Similarity=0.171 Sum_probs=117.7
Q ss_pred EEeCCeEEEEECCCCCcHHHHHHHHHcCCC----C-----CCCceeEEEECCEeCC------CCcCe---EEEEcCCCCC
Q 007554 78 YAEPGTLTALMGPSGSGKSTLLDALSSRLA----S-----NAFLSGTILLNGHKTK------LSFGT---AAYVTQDDNL 139 (599)
Q Consensus 78 ~i~~Ge~~aI~G~sGsGKSTLl~~L~G~~~----~-----~~~~~G~I~~~g~~~~------~~~~~---~~yv~Q~~~l 139 (599)
.+++|..++|+|+||||||||+|+|+|... . -.+.+|.|.++|.... ...+. ..++.+.+.+
T Consensus 16 ~v~~g~~vgiVG~pnaGKSTL~n~Ltg~~~a~~~~~p~tTi~p~~G~v~v~~~r~~~l~~~~~~~~~v~~~i~lvD~pGl 95 (392)
T 1ni3_A 16 RPGNNLKTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATIDPEEAKVAVPDERFDWLCEAYKPKSRVPAFLTVFDIAGL 95 (392)
T ss_dssp SSSSCCEEEEEECSSSSHHHHHHHHHHSTTTSTTCCSSCCCCTTEEEEEECCHHHHHHHHHHCCSEEECEEEEEECTGGG
T ss_pred cccCCCEEEEECCCCCCHHHHHHHHHCCCcccccCCCceeecceeeeeeeCCcchhhhhhhcccccccCcceEEEecccc
Confidence 457899999999999999999999999321 0 0134899999984311 11122 3477788888
Q ss_pred CCCCCHHHHH--HHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHHHHHHHHHhhCC--CE
Q 007554 140 IGTLTVRETI--SYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRP--RL 215 (599)
Q Consensus 140 ~~~lTV~e~l--~~~~~~~~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSGGerqRv~ia~aL~~~p--~i 215 (599)
....+..|++ .|...++. ++.++..+...+ |. .+..+||+. +| ++
T Consensus 96 ~~~~s~~e~L~~~fl~~ir~------------~d~il~Vvd~~~--d~-----~i~~v~~~~------------dP~~di 144 (392)
T 1ni3_A 96 TKGASTGVGLGNAFLSHVRA------------VDAIYQVVRAFD--DA-----EIIHVEGDV------------DPIRDL 144 (392)
T ss_dssp CCCCCSSSSSCHHHHHHHTT------------CSEEEEEEECCC--TT-----CSSCCSSSS------------CHHHHH
T ss_pred ccCCcHHHHHHHHHHHHHHH------------HHHHHHHHhccc--cc-----eeeeecccc------------Ccchhh
Confidence 8777766655 33333221 011111111111 11 223356653 89 99
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHH-HhCCCEEEEEecCCchHHHhccCeEE-EEeCC-eEEEecChhh
Q 007554 216 LFLDEPTSGLDSAAAFFVTQTLRCL-SRDGRTVIASIHQPSSEVFELFDRLY-LLSGG-KTVYFGETSA 281 (599)
Q Consensus 216 lllDEPtsgLD~~~~~~i~~~L~~l-~~~g~tvi~~~H~p~~~i~~~~D~v~-~L~~G-~iv~~G~~~~ 281 (599)
+++|||+.++|+......++.++++ ++.|.|++ +|+. ..+.++||++. +|.+| ++++.|+.++
T Consensus 145 ~ildeel~~~D~~~~~k~~~~l~~~~~~~g~ti~--sh~~-~~~~~l~~~i~~~L~~G~~~~~~~~~~~ 210 (392)
T 1ni3_A 145 SIIVDELLIKDAEFVEKHLEGLRKITSRGANTLE--MKAK-KEEQAIIEKVYQYLTETKQPIRKGDWSN 210 (392)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTCCSSCSSS--HHHH-HHHHHHHHHHHHHHHTTCSCGGGSCCCH
T ss_pred hhchhhhHHHHHHHHHHHHHHHHHHHHhcCCccc--cccH-HHHHHHHHHHHHHhccCCceeecCCCCH
Confidence 9999999999999999999999998 66777764 9984 67899999999 99999 9888877544
No 144
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=99.11 E-value=2.9e-12 Score=132.02 Aligned_cols=105 Identities=18% Similarity=0.235 Sum_probs=68.9
Q ss_pred EEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEE---CCEeCCCC-----cCeEEEEcCCCC-----------
Q 007554 78 YAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILL---NGHKTKLS-----FGTAAYVTQDDN----------- 138 (599)
Q Consensus 78 ~i~~Ge~~aI~G~sGsGKSTLl~~L~G~~~~~~~~~G~I~~---~g~~~~~~-----~~~~~yv~Q~~~----------- 138 (599)
.+.+|++++|+||||||||||+|+|+|+..|. +|+|.+ +|++.... .+.++||+|++.
T Consensus 165 ~~l~geiv~l~G~sG~GKSTll~~l~g~~~~~---~G~i~~~~~~g~~~t~~~~~~~~~~~g~v~q~p~~~~~~~~~~~~ 241 (301)
T 1u0l_A 165 EYLKGKISTMAGLSGVGKSSLLNAINPGLKLR---VSEVSEKLQRGRHTTTTAQLLKFDFGGYVVDTPGFANLEINDIEP 241 (301)
T ss_dssp HHHSSSEEEEECSTTSSHHHHHHHHSTTCCCC----------------CCCSCCEEECTTSCEEESSCSSTTCCCCSSCH
T ss_pred HHhcCCeEEEECCCCCcHHHHHHHhccccccc---ccceecccCCCCCceeeeEEEEcCCCCEEEECcCCCccCCCcCCH
Confidence 34579999999999999999999999999885 899999 88764221 135789999974
Q ss_pred -----CCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCC-ccccccccCcccCCCCH
Q 007554 139 -----LIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQ-DCADTVIGNWHLRGISG 197 (599)
Q Consensus 139 -----l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~l~L~-~~~~~~vg~~~~~~LSG 197 (599)
+||.+|+ ||+.|.. +. . ..+...++.++++.+||. +.++.. ++.||+
T Consensus 242 ~~~~~l~~~~~~-~n~~~~~-~~-~----~~e~~~~v~~~l~~~~L~~~~~~~~-----~~~lse 294 (301)
T 1u0l_A 242 EELKHYFKEFGD-KQCFFSD-CN-H----VDEPECGVKEAVENGEIAESRYENY-----VKMFYE 294 (301)
T ss_dssp HHHGGGSTTSSS-CCCSSTT-CC-S----SSCSSCHHHHHHHHTSSCHHHHHHH-----HHHHHH
T ss_pred HHHHHHHHhccc-ccCcCCC-Cc-C----CCCCCcHHHHHHHcCCCCHHHHHHH-----HHHHHH
Confidence 5889999 9988752 11 1 122335688999999995 555553 345664
No 145
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=99.08 E-value=5.4e-13 Score=139.46 Aligned_cols=167 Identities=21% Similarity=0.174 Sum_probs=104.2
Q ss_pred ccceeeceEEEEeCC-------eEEEEECCCCCcHHHHHHHHHcCCCCC-CCceeEEEECCEeC-----CCCcCeEEEEc
Q 007554 68 THNVLEGLTGYAEPG-------TLTALMGPSGSGKSTLLDALSSRLASN-AFLSGTILLNGHKT-----KLSFGTAAYVT 134 (599)
Q Consensus 68 ~~~iL~~vs~~i~~G-------e~~aI~G~sGsGKSTLl~~L~G~~~~~-~~~~G~I~~~g~~~-----~~~~~~~~yv~ 134 (599)
...+++++++.+++| +.++|.||||+|||||+++|+|.+... ...+|.+..++.+. ......+.+++
T Consensus 30 ~~~~~~~l~~~i~~~~~~~~~~~~~ll~Gp~G~GKTTLa~~ia~~l~~~~~~~sg~~~~~~~~l~~~~~~~~~~~v~~iD 109 (334)
T 1in4_A 30 QENVKKKLSLALEAAKMRGEVLDHVLLAGPPGLGKTTLAHIIASELQTNIHVTSGPVLVKQGDMAAILTSLERGDVLFID 109 (334)
T ss_dssp CHHHHHHHHHHHHHHHHHTCCCCCEEEESSTTSSHHHHHHHHHHHHTCCEEEEETTTCCSHHHHHHHHHHCCTTCEEEEE
T ss_pred cHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEechHhcCHHHHHHHHHHccCCCEEEEc
Confidence 356889999999877 899999999999999999999987321 11366666555432 11235689999
Q ss_pred CCCCCCCCCCHHHHHHHHhhccCCCC-CCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHHHHHHHHHhhCC
Q 007554 135 QDDNLIGTLTVRETISYSARLRLPDK-MPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRP 213 (599)
Q Consensus 135 Q~~~l~~~lTV~e~l~~~~~~~~~~~-~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSGGerqRv~ia~aL~~~p 213 (599)
|.+.+.+ ++.|++..........- .......+.+...+..+++.. +++. +..||+|+|||+.++
T Consensus 110 E~~~l~~--~~~e~L~~~~~~~~~~i~~~~~~~~~~i~~~l~~~~li~-at~~-----~~~Ls~~l~sR~~l~------- 174 (334)
T 1in4_A 110 EIHRLNK--AVEELLYSAIEDFQIDIMIGKGPSAKSIRIDIQPFTLVG-ATTR-----SGLLSSPLRSRFGII------- 174 (334)
T ss_dssp TGGGCCH--HHHHHHHHHHHTSCCCC---------------CCCEEEE-EESC-----GGGSCHHHHTTCSEE-------
T ss_pred chhhcCH--HHHHHHHHHHHhcccceeeccCcccccccccCCCeEEEE-ecCC-----cccCCHHHHHhcCce-------
Confidence 9887765 78888865433211000 001111233444444445533 4443 346999999998655
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCCchHHHhccCe
Q 007554 214 RLLFLDEPTSGLDSAAAFFVTQTLRCLSR-DGRTVIASIHQPSSEVFELFDR 264 (599)
Q Consensus 214 ~illlDEPtsgLD~~~~~~i~~~L~~l~~-~g~tvi~~~H~p~~~i~~~~D~ 264 (599)
.+||+.+..++.+.|++.++ .+. .|++ +.+..++++
T Consensus 175 ---------~~Ld~~~~~~l~~iL~~~~~~~~~-----~~~~-~~~~~ia~~ 211 (334)
T 1in4_A 175 ---------LELDFYTVKELKEIIKRAASLMDV-----EIED-AAAEMIAKR 211 (334)
T ss_dssp ---------EECCCCCHHHHHHHHHHHHHHTTC-----CBCH-HHHHHHHHT
T ss_pred ---------eeCCCCCHHHHHHHHHHHHHHcCC-----CcCH-HHHHHHHHh
Confidence 78888889999999998875 342 4663 344455543
No 146
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=99.05 E-value=1.7e-11 Score=126.28 Aligned_cols=116 Identities=19% Similarity=0.242 Sum_probs=65.9
Q ss_pred EEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEE---CCEeCCCC---cCe-EEEEcCCCCCCC----CCCHH
Q 007554 78 YAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILL---NGHKTKLS---FGT-AAYVTQDDNLIG----TLTVR 146 (599)
Q Consensus 78 ~i~~Ge~~aI~G~sGsGKSTLl~~L~G~~~~~~~~~G~I~~---~g~~~~~~---~~~-~~yv~Q~~~l~~----~lTV~ 146 (599)
++.+|++++|+||||+|||||+|+|+|...+. +|+|.+ +|+..... .+. .+|++|++.+.. .+|+
T Consensus 169 ~~~~G~~~~lvG~sG~GKSTLln~L~g~~~~~---~G~I~~~~~~G~~tt~~~~~~~~~~g~v~dtpg~~~~~l~~lt~- 244 (307)
T 1t9h_A 169 PHFQDKTTVFAGQSGVGKSSLLNAISPELGLR---TNEISEHLGRGKHTTRHVELIHTSGGLVADTPGFSSLEFTDIEE- 244 (307)
T ss_dssp GGGTTSEEEEEESHHHHHHHHHHHHCC----------------------CCCCCEEEETTEEEESSCSCSSCCCTTCCH-
T ss_pred hhcCCCEEEEECCCCCCHHHHHHHhccccccc---ccceeeecCCCcccccHHHHhhcCCEEEecCCCccccccccCCH-
Confidence 45689999999999999999999999998775 899998 77653221 111 689999987765 6899
Q ss_pred HHHH--HHh------hccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHH
Q 007554 147 ETIS--YSA------RLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRR 202 (599)
Q Consensus 147 e~l~--~~~------~~~~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSGGerqR 202 (599)
|++. |.. .++........+....+.++++.++|.+..... ...++.|++||
T Consensus 245 e~l~~~f~~~~~~~~~C~f~~c~h~~e~~~~v~~aLe~~~L~~~r~~~-----y~~lls~~~~~ 303 (307)
T 1t9h_A 245 EELGYTFPDIREKSSSCKFRGCLHLKEPKCAVKQAVEDGELKQYRYDH-----YVEFMTEIKDR 303 (307)
T ss_dssp HHHGGGSHHHHHHGGGCSSTTCCSSSCSSCHHHHHHHHTSSCHHHHHH-----HHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhhhccccCCCCccCHHHHHHHHHHhCCChHHHHHH-----HHHHHHHHhhc
Confidence 8883 321 122221111222335688899999997643221 12467777763
No 147
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=99.05 E-value=8.9e-14 Score=141.52 Aligned_cols=141 Identities=18% Similarity=0.193 Sum_probs=94.0
Q ss_pred ccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCC-----cCeEEEEcCCC-CCCC
Q 007554 68 THNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLS-----FGTAAYVTQDD-NLIG 141 (599)
Q Consensus 68 ~~~iL~~vs~~i~~Ge~~aI~G~sGsGKSTLl~~L~G~~~~~~~~~G~I~~~g~~~~~~-----~~~~~yv~Q~~-~l~~ 141 (599)
...+++++++.+++| ++|+||||||||||+++|+|...+ |.|.++|.+.... .+.+++++|+. ...|
T Consensus 32 ~~~~l~~~~l~~~~G--vlL~Gp~GtGKTtLakala~~~~~-----~~i~i~g~~l~~~~~~~~~~~i~~vf~~a~~~~p 104 (274)
T 2x8a_A 32 NPDQFKALGLVTPAG--VLLAGPPGCGKTLLAKAVANESGL-----NFISVKGPELLNMYVGESERAVRQVFQRAKNSAP 104 (274)
T ss_dssp SHHHHHHTTCCCCSE--EEEESSTTSCHHHHHHHHHHHTTC-----EEEEEETTTTCSSTTHHHHHHHHHHHHHHHHTCS
T ss_pred CHHHHHHcCCCCCCe--EEEECCCCCcHHHHHHHHHHHcCC-----CEEEEEcHHHHhhhhhHHHHHHHHHHHHHHhcCC
Confidence 356899999999999 999999999999999999998654 7899998654211 12456777764 4455
Q ss_pred CCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHHHHHHHHHhhCCCEEEEeCC
Q 007554 142 TLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEP 221 (599)
Q Consensus 142 ~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSGGerqRv~ia~aL~~~p~illlDEP 221 (599)
.+++.|++......+ .. .... .+.+..++ ....|||||+||+.|++++..+|++| |||
T Consensus 105 ~i~~~Deid~~~~~r-------~~--~~~~------~~~~~~~~-----~l~~Lsgg~~~~~~i~ia~tn~p~~L--D~a 162 (274)
T 2x8a_A 105 CVIFFDEVDALCPRR-------SD--RETG------ASVRVVNQ-----LLTEMDGLEARQQVFIMAATNRPDII--DPA 162 (274)
T ss_dssp EEEEEETCTTTCC------------------------CTTHHHH-----HHHHHHTCCSTTCEEEEEEESCGGGS--CHH
T ss_pred CeEeeehhhhhhccc-------CC--Ccch------HHHHHHHH-----HHHhhhcccccCCEEEEeecCChhhC--CHh
Confidence 556666654322111 00 0000 11222222 33469999999999999999999986 988
Q ss_pred CC------------CCCHHHHHHHHHHH
Q 007554 222 TS------------GLDSAAAFFVTQTL 237 (599)
Q Consensus 222 ts------------gLD~~~~~~i~~~L 237 (599)
+. -.|...+.+|++.+
T Consensus 163 l~r~gRfd~~i~~~~P~~~~r~~il~~~ 190 (274)
T 2x8a_A 163 ILRPGRLDKTLFVGLPPPADRLAILKTI 190 (274)
T ss_dssp HHSTTSSCEEEECCSCCHHHHHHHHHHH
T ss_pred hcCcccCCeEEEeCCcCHHHHHHHHHHH
Confidence 64 23666666666543
No 148
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=99.03 E-value=3.3e-14 Score=137.59 Aligned_cols=57 Identities=18% Similarity=0.250 Sum_probs=42.9
Q ss_pred HHH-HHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhccCeEEEEeC
Q 007554 205 IAL-EILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSG 270 (599)
Q Consensus 205 ia~-aL~~~p~illlDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~p~~~i~~~~D~v~~L~~ 270 (599)
.++ +++.+|++++|||+|+++|..+...|.+.|.+..++ +...|.+ ..+|+++++++
T Consensus 116 ~~~~~~l~~p~~~ilde~~~~~d~~~e~~i~~~l~~~~~~----~~~a~~~-----~~~D~iivnd~ 173 (198)
T 1lvg_A 116 CPIYIFVQPPSLDVLEQRLRLRNTETEESLAKRLAAARTD----MESSKEP-----GLFDLVIINDD 173 (198)
T ss_dssp CCEEEEEECSCHHHHHHHHHHHTCSCHHHHHHHHHHHHHH----TTGGGST-----TTCSEEEECSS
T ss_pred CcEEEEEeCCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHH----HHHhhcc-----CCceEEEECCC
Confidence 445 677788888889999999999999999998887653 2334521 57999888763
No 149
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=98.98 E-value=2e-09 Score=106.25 Aligned_cols=68 Identities=18% Similarity=0.134 Sum_probs=48.6
Q ss_pred HHHHHHHh--hCCCEEEEeCCCCCC--CHHHHHHHHHHHHHHH-hCCCEEEEEecCCchH-------HHhccCeEEEEeC
Q 007554 203 VSIALEIL--MRPRLLFLDEPTSGL--DSAAAFFVTQTLRCLS-RDGRTVIASIHQPSSE-------VFELFDRLYLLSG 270 (599)
Q Consensus 203 v~ia~aL~--~~p~illlDEPtsgL--D~~~~~~i~~~L~~l~-~~g~tvi~~~H~p~~~-------i~~~~D~v~~L~~ 270 (599)
...++.++ .+|+++++|+|++.+ |+....+.+..|.+++ +.|.|||+++|..... +.+.+|.++.|+.
T Consensus 117 ~~~i~~~~~~~~~~~vviD~~~~l~~~~~~~~~~~l~~l~~~~~~~~~~vi~~~h~~~~~~~~~~~~~~~~~D~vi~L~~ 196 (247)
T 2dr3_A 117 IEVLRQAIRDINAKRVVVDSVTTLYINKPAMARSIILQLKRVLAGTGCTSIFVSQVSVGERGFGGPGVEHGVDGIIRLDL 196 (247)
T ss_dssp HHHHHHHHHHHTCCEEEEETSGGGTTTCGGGHHHHHHHHHHHHHHTTCEEEEEEECC----CCC-CCHHHHSSEEEEEEE
T ss_pred HHHHHHHHHHhCCCEEEECCchHhhcCCHHHHHHHHHHHHHHHHHCCCeEEEEecCCCCcccccccccceeEEEEEEEEE
Confidence 33334444 589999999999988 6655566666666665 4689999999986431 4577899999974
No 150
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=98.96 E-value=2.3e-10 Score=118.01 Aligned_cols=113 Identities=17% Similarity=0.207 Sum_probs=79.0
Q ss_pred eEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCcCeEEEEcCCCCCCCCCCHHHHHHHHhh
Q 007554 75 LTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLSFGTAAYVTQDDNLIGTLTVRETISYSAR 154 (599)
Q Consensus 75 vs~~i~~Ge~~aI~G~sGsGKSTLl~~L~G~~~~~~~~~G~I~~~g~~~~~~~~~~~yv~Q~~~l~~~lTV~e~l~~~~~ 154 (599)
+++..++|++++|+|||||||||+++.|++.+.+. .|+|.+.+.+.... ...|
T Consensus 97 ~~~~~~~~~vi~ivG~~GsGKTTl~~~LA~~l~~~---g~kV~lv~~D~~r~-----------------~a~e------- 149 (306)
T 1vma_A 97 LNVPPEPPFVIMVVGVNGTGKTTSCGKLAKMFVDE---GKSVVLAAADTFRA-----------------AAIE------- 149 (306)
T ss_dssp CCCCSSSCEEEEEECCTTSSHHHHHHHHHHHHHHT---TCCEEEEEECTTCH-----------------HHHH-------
T ss_pred CcccCCCCeEEEEEcCCCChHHHHHHHHHHHHHhc---CCEEEEEccccccH-----------------HHHH-------
Confidence 45556789999999999999999999999998763 56777655432100 0011
Q ss_pred ccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHHH---HHHHHHhhCCCEEEEeCCCCCCCHHHHH
Q 007554 155 LRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRV---SIALEILMRPRLLFLDEPTSGLDSAAAF 231 (599)
Q Consensus 155 ~~~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSGGerqRv---~ia~aL~~~p~illlDEPtsgLD~~~~~ 231 (599)
....+.+.+++.. ....|||+.+++ +|++++..+|+++|+|||.. .....
T Consensus 150 --------------qL~~~~~~~gl~~----------~~~~s~~~~~~v~~~al~~a~~~~~dvvIiDtpg~---~~~~~ 202 (306)
T 1vma_A 150 --------------QLKIWGERVGATV----------ISHSEGADPAAVAFDAVAHALARNKDVVIIDTAGR---LHTKK 202 (306)
T ss_dssp --------------HHHHHHHHHTCEE----------ECCSTTCCHHHHHHHHHHHHHHTTCSEEEEEECCC---CSCHH
T ss_pred --------------HHHHHHHHcCCcE----------EecCCccCHHHHHHHHHHHHHhcCCCEEEEECCCc---hhhHH
Confidence 1223444556542 124689999999 99999999999999999974 34455
Q ss_pred HHHHHHHHHH
Q 007554 232 FVTQTLRCLS 241 (599)
Q Consensus 232 ~i~~~L~~l~ 241 (599)
.+++.|+++.
T Consensus 203 ~l~~eL~~l~ 212 (306)
T 1vma_A 203 NLMEELRKVH 212 (306)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 6666665554
No 151
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=98.91 E-value=2.5e-09 Score=116.33 Aligned_cols=174 Identities=14% Similarity=0.141 Sum_probs=111.3
Q ss_pred cceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCcCeEEEEcCCCCCCCCCCHHHH
Q 007554 69 HNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLSFGTAAYVTQDDNLIGTLTVRET 148 (599)
Q Consensus 69 ~~iL~~vs~~i~~Ge~~aI~G~sGsGKSTLl~~L~G~~~~~~~~~G~I~~~g~~~~~~~~~~~yv~Q~~~l~~~lTV~e~ 148 (599)
...|+++.+-+++|+++.|.|+||+|||||+..|++...+. .| ..+.|+.-+ ++..+.
T Consensus 190 ~~~LD~~~gGl~~G~liiI~G~pG~GKTtl~l~ia~~~~~~---~g-------------~~Vl~~s~E------~s~~~l 247 (454)
T 2r6a_A 190 FTELDRMTSGFQRSDLIIVAARPSVGKTAFALNIAQNVATK---TN-------------ENVAIFSLE------MSAQQL 247 (454)
T ss_dssp CHHHHHHHSSBCTTCEEEEECCTTSCHHHHHHHHHHHHHHH---SS-------------CCEEEEESS------SCHHHH
T ss_pred cHHHHhhcCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHh---CC-------------CcEEEEECC------CCHHHH
Confidence 45688888889999999999999999999999998765331 22 123344322 122222
Q ss_pred HHH--Hh-------hccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHHHHHHHHHh--hCCCEEE
Q 007554 149 ISY--SA-------RLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEIL--MRPRLLF 217 (599)
Q Consensus 149 l~~--~~-------~~~~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSGGerqRv~ia~aL~--~~p~ill 217 (599)
..- +. +++. ......+ ..++.+.+..++..+.. +- ...++|.+|.+ +.++.++ .+|++++
T Consensus 248 ~~r~~~~~~~~~~~~l~~-g~l~~~~-~~~~~~a~~~l~~~~l~---i~--d~~~~s~~~i~--~~~~~l~~~~~~~liv 318 (454)
T 2r6a_A 248 VMRMLCAEGNINAQNLRT-GKLTPED-WGKLTMAMGSLSNAGIY---ID--DTPSIRVSDIR--AKCRRLKQESGLGMIV 318 (454)
T ss_dssp HHHHHHHHHTCCHHHHHT-SCCCHHH-HHHHHHHHHHHHSSCEE---EE--CCTTCCHHHHH--HHHHHHHTTTCCCEEE
T ss_pred HHHHHHHHcCCCHHHHhc-CCCCHHH-HHHHHHHHHHHhcCCEE---EE--CCCCCCHHHHH--HHHHHHHHHcCCCEEE
Confidence 111 00 0111 1122222 23455555555433322 11 12368999987 5667776 6899999
Q ss_pred EeCCCCCCCH--------HHHHHHHHHHHHHHh-CCCEEEEEec---------C--Cc-------hHHHhccCeEEEEeC
Q 007554 218 LDEPTSGLDS--------AAAFFVTQTLRCLSR-DGRTVIASIH---------Q--PS-------SEVFELFDRLYLLSG 270 (599)
Q Consensus 218 lDEPtsgLD~--------~~~~~i~~~L~~l~~-~g~tvi~~~H---------~--p~-------~~i~~~~D~v~~L~~ 270 (599)
+|+++...+. ....++.+.|+.+++ .|.+||+++| + |. ..+...+|.|++|+.
T Consensus 319 ID~l~~~~~~~~~~~~~~~~i~~i~~~Lk~lAke~~i~vi~~sql~r~~e~~~~~~p~lsdlr~Sg~ie~~aD~vi~l~r 398 (454)
T 2r6a_A 319 IDYLQLIQGSGRSKENRQQEVSEISRSLKALARELEVPVIALSQLSRSVEQRQDKRPMMSDIRESGSIEQDADIVAFLYR 398 (454)
T ss_dssp EECGGGSCCSCC----CHHHHHHHHHHHHHHHHHHTCCEEEEECCCTTSTTC---CCCTHHHHTTCSHHHHCSEEEEEEE
T ss_pred EccHHHhccCCCCCCCHHHHHHHHHHHHHHHHHHhCCeEEEEecCCcccccCCCCCCcHHHhhccchhHhhCCEEEEEec
Confidence 9999987742 334677888888886 4899999999 2 42 146778999999987
Q ss_pred CeE
Q 007554 271 GKT 273 (599)
Q Consensus 271 G~i 273 (599)
++.
T Consensus 399 ~~~ 401 (454)
T 2r6a_A 399 DDY 401 (454)
T ss_dssp TTC
T ss_pred ccc
Confidence 653
No 152
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=98.88 E-value=2.9e-09 Score=109.30 Aligned_cols=118 Identities=19% Similarity=0.092 Sum_probs=82.1
Q ss_pred eceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCcCeEEEEcCCCCCCCCCCHHHHHHHH
Q 007554 73 EGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLSFGTAAYVTQDDNLIGTLTVRETISYS 152 (599)
Q Consensus 73 ~~vs~~i~~Ge~~aI~G~sGsGKSTLl~~L~G~~~~~~~~~G~I~~~g~~~~~~~~~~~yv~Q~~~l~~~lTV~e~l~~~ 152 (599)
++++++ +|++++++|+||+||||++..|++.+.+. .|+|.+.|.+.... .++ +.+
T Consensus 91 ~~i~~~--~~~~i~i~g~~G~GKTT~~~~la~~~~~~---~~~v~l~~~d~~~~----------------~~~-~ql--- 145 (295)
T 1ls1_A 91 RLPVLK--DRNLWFLVGLQGSGKTTTAAKLALYYKGK---GRRPLLVAADTQRP----------------AAR-EQL--- 145 (295)
T ss_dssp CCCCCC--SSEEEEEECCTTTTHHHHHHHHHHHHHHT---TCCEEEEECCSSCH----------------HHH-HHH---
T ss_pred ceeecC--CCeEEEEECCCCCCHHHHHHHHHHHHHHc---CCeEEEecCCcccH----------------hHH-HHH---
Confidence 678887 89999999999999999999999998753 67777765532110 000 100
Q ss_pred hhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHHHHHHHHHhhCCCEEEEeCC-CCCCCHHHHH
Q 007554 153 ARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEP-TSGLDSAAAF 231 (599)
Q Consensus 153 ~~~~~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSGGerqRv~ia~aL~~~p~illlDEP-tsgLD~~~~~ 231 (599)
..+.+..++...... .+-.-.+.+|.+|+.+...+++++|+||| ++++|.....
T Consensus 146 ------------------~~~~~~~~l~~~~~~-------~~~~p~~l~~~~l~~~~~~~~D~viiDtpp~~~~d~~~~~ 200 (295)
T 1ls1_A 146 ------------------RLLGEKVGVPVLEVM-------DGESPESIRRRVEEKARLEARDLILVDTAGRLQIDEPLMG 200 (295)
T ss_dssp ------------------HHHHHHHTCCEEECC-------TTCCHHHHHHHHHHHHHHHTCCEEEEECCCCSSCCHHHHH
T ss_pred ------------------HHhcccCCeEEEEcC-------CCCCHHHHHHHHHHHHHhCCCCEEEEeCCCCccccHHHHH
Confidence 012233455432110 01234466789999988899999999999 9999998888
Q ss_pred HHHHHHHHH
Q 007554 232 FVTQTLRCL 240 (599)
Q Consensus 232 ~i~~~L~~l 240 (599)
++.+..+.+
T Consensus 201 ~l~~~~~~~ 209 (295)
T 1ls1_A 201 ELARLKEVL 209 (295)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHhhhc
Confidence 887776665
No 153
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*
Probab=98.87 E-value=7.3e-11 Score=129.29 Aligned_cols=164 Identities=15% Similarity=0.135 Sum_probs=97.3
Q ss_pred ceEEEEeCCeEEEEECCCCCcHHHHHHHHHc--CCCCCCCceeEEEECCEeCCCC-cCeEEEEcCCCCCCCCCCHHHHHH
Q 007554 74 GLTGYAEPGTLTALMGPSGSGKSTLLDALSS--RLASNAFLSGTILLNGHKTKLS-FGTAAYVTQDDNLIGTLTVRETIS 150 (599)
Q Consensus 74 ~vs~~i~~Ge~~aI~G~sGsGKSTLl~~L~G--~~~~~~~~~G~I~~~g~~~~~~-~~~~~yv~Q~~~l~~~lTV~e~l~ 150 (599)
.+++++.++..++|.|++||||||+++.|.. +.... .|++.+.+.+.+.. .. .| ..-+++.. +|.++..
T Consensus 159 pv~ldL~~~pHlLIaG~TGSGKSt~L~~li~sLl~~~~---p~~v~l~liDpK~~el~--~~-~~lPhl~~--~Vvtd~~ 230 (512)
T 2ius_A 159 PVVADLAKMPHLLVAGTTGSGASVGVNAMILSMLYKAQ---PEDVRFIMIDPKMLELS--VY-EGIPHLLT--EVVTDMK 230 (512)
T ss_dssp EEEEEGGGSCSEEEECCTTSSHHHHHHHHHHHHHTTCC---TTTEEEEEECCSSSGGG--GG-TTCTTBSS--SCBCSHH
T ss_pred EEEEEcccCceEEEECCCCCCHHHHHHHHHHHHHHhCC---CceEEEEEECCchhhhh--hh-ccCCcccc--eeecCHH
Confidence 4778888999999999999999999999875 23332 36666555443210 00 00 00011110 1212221
Q ss_pred HHhh-ccCCCCCCHHHHHHHHHHHHHHcCCCccccc--cccCcccCCCCHHHHHHH----------HHHHHHhhCCC-EE
Q 007554 151 YSAR-LRLPDKMPWSEKRTLVERTIIEMGLQDCADT--VIGNWHLRGISGGERRRV----------SIALEILMRPR-LL 216 (599)
Q Consensus 151 ~~~~-~~~~~~~~~~~~~~~v~~~l~~l~L~~~~~~--~vg~~~~~~LSGGerqRv----------~ia~aL~~~p~-il 216 (599)
.+.. ++ ....+.++| .+.+...|+.+..+. .+ ...+||||+||. .+++++...|. ++
T Consensus 231 ~a~~~L~----~~~~EmerR-~~ll~~~Gv~~i~~yn~~~----~~~~s~G~~~~~~~~~pg~~~~~~a~~l~~lP~ivl 301 (512)
T 2ius_A 231 DAANALR----WCVNEMERR-YKLMSALGVRNLAGYNEKI----AEADRMMRPIPDPYWKPGDSMDAQHPVLKKEPYIVV 301 (512)
T ss_dssp HHHHHHH----HHHHHHHHH-HHHHHHTTCSSHHHHHHHH----HHHHHTTCCCBCTTC---------CCBCCCCCEEEE
T ss_pred HHHHHHH----HHHHHHHHH-HHHHHHcCCccHHHHHHHH----HHHhhcCCcccccccccccchhccccccccCCcEEE
Confidence 1111 11 012344445 367888888765332 11 124788988753 35566677898 78
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHhC----CCEEEEEecCCc
Q 007554 217 FLDEPTSGLDSAAAFFVTQTLRCLSRD----GRTVIASIHQPS 255 (599)
Q Consensus 217 llDEPtsgLD~~~~~~i~~~L~~l~~~----g~tvi~~~H~p~ 255 (599)
++||++.-+|.. ...+.+.|.++++. |.++|++||+|+
T Consensus 302 vIDE~~~ll~~~-~~~~~~~l~~Lar~gRa~GI~LIlaTQrp~ 343 (512)
T 2ius_A 302 LVDEFADLMMTV-GKKVEELIARLAQKARAAGIHLVLATQRPS 343 (512)
T ss_dssp EEETHHHHHHHH-HHHHHHHHHHHHHHCGGGTEEEEEEESCCC
T ss_pred EEeCHHHHHhhh-hHHHHHHHHHHHHHhhhCCcEEEEEecCCc
Confidence 999999988843 34566666666542 779999999987
No 154
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=98.86 E-value=2.3e-09 Score=110.05 Aligned_cols=141 Identities=13% Similarity=0.183 Sum_probs=88.8
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCcCeEEEEcCCCCCCCCCCHHHHHHHHhhccCCC
Q 007554 80 EPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLSFGTAAYVTQDDNLIGTLTVRETISYSARLRLPD 159 (599)
Q Consensus 80 ~~Ge~~aI~G~sGsGKSTLl~~L~G~~~~~~~~~G~I~~~g~~~~~~~~~~~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~ 159 (599)
++|++++|+|||||||||+++.|++.+.+. +| +++.++.+|.. ..+..|.+...+.
T Consensus 103 ~~g~vi~lvG~~GsGKTTl~~~LA~~l~~~---~G-------------~~V~lv~~D~~---r~~a~eqL~~~~~----- 158 (296)
T 2px0_A 103 IHSKYIVLFGSTGAGKTTTLAKLAAISMLE---KH-------------KKIAFITTDTY---RIAAVEQLKTYAE----- 158 (296)
T ss_dssp CCSSEEEEEESTTSSHHHHHHHHHHHHHHT---TC-------------CCEEEEECCCS---STTHHHHHHHHHT-----
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHHHh---cC-------------CEEEEEecCcc---cchHHHHHHHHHH-----
Confidence 479999999999999999999999987642 34 24667777652 2355665544221
Q ss_pred CCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHH
Q 007554 160 KMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRC 239 (599)
Q Consensus 160 ~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSGGerqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~L~~ 239 (599)
..|+.... ..+. +.-+.+|+ .+.+|+++|+| |+|+|+.....+.++.+-
T Consensus 159 ----------------~~gl~~~~----------~~~~-~~l~~al~--~~~~~dlvIiD--T~G~~~~~~~~~~el~~~ 207 (296)
T 2px0_A 159 ----------------LLQAPLEV----------CYTK-EEFQQAKE--LFSEYDHVFVD--TAGRNFKDPQYIDELKET 207 (296)
T ss_dssp ----------------TTTCCCCB----------CSSH-HHHHHHHH--HGGGSSEEEEE--CCCCCTTSHHHHHHHHHH
T ss_pred ----------------hcCCCeEe----------cCCH-HHHHHHHH--HhcCCCEEEEe--CCCCChhhHHHHHHHHHH
Confidence 12332110 0122 33355555 45999999999 999998766555444433
Q ss_pred HH---hCCCEEEE-EecCCchHHHhccCeEEEEeCCeEEEe
Q 007554 240 LS---RDGRTVIA-SIHQPSSEVFELFDRLYLLSGGKTVYF 276 (599)
Q Consensus 240 l~---~~g~tvi~-~~H~p~~~i~~~~D~v~~L~~G~iv~~ 276 (599)
+. ..+.++++ ++|+. .++.+.+|++..+..+.++..
T Consensus 208 l~~~~~~~~~lVl~at~~~-~~~~~~~~~~~~l~~~giVlt 247 (296)
T 2px0_A 208 IPFESSIQSFLVLSATAKY-EDMKHIVKRFSSVPVNQYIFT 247 (296)
T ss_dssp SCCCTTEEEEEEEETTBCH-HHHHHHTTTTSSSCCCEEEEE
T ss_pred HhhcCCCeEEEEEECCCCH-HHHHHHHHHHhcCCCCEEEEe
Confidence 32 12334444 47874 567777887666666777654
No 155
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=98.86 E-value=7.3e-10 Score=120.58 Aligned_cols=51 Identities=22% Similarity=0.210 Sum_probs=47.5
Q ss_pred cceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeC
Q 007554 69 HNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKT 123 (599)
Q Consensus 69 ~~iL~~vs~~i~~Ge~~aI~G~sGsGKSTLl~~L~G~~~~~~~~~G~I~~~g~~~ 123 (599)
..+|+++|+++++ ++++|+|||||||||||++|+|+++|+ +|+|.++|++.
T Consensus 17 ~~~l~~vsl~i~~-e~~~liG~nGsGKSTLl~~l~Gl~~p~---~G~I~~~g~~~ 67 (483)
T 3euj_A 17 WNGFFARTFDFDE-LVTTLSGGNGAGKSTTMAGFVTALIPD---LTLLNFRNTTE 67 (483)
T ss_dssp ETTEEEEEEECCS-SEEEEECCTTSSHHHHHHHHHHHHCCC---TTTCCCCCTTS
T ss_pred cccccceEEEEcc-ceEEEECCCCCcHHHHHHHHhcCCCCC---CCEEEECCEEc
Confidence 5689999999999 999999999999999999999999886 89999999764
No 156
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=98.85 E-value=5.4e-11 Score=134.07 Aligned_cols=157 Identities=17% Similarity=0.135 Sum_probs=100.7
Q ss_pred ccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCcCeEEEEcCCCCCCCCCCHHH
Q 007554 68 THNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLSFGTAAYVTQDDNLIGTLTVRE 147 (599)
Q Consensus 68 ~~~iL~~vs~~i~~Ge~~aI~G~sGsGKSTLl~~L~G~~~~~~~~~G~I~~~g~~~~~~~~~~~yv~Q~~~l~~~lTV~e 147 (599)
...+++++++.+.+|+.++|+||||+|||||+++|++...+. .-|.+.+++.+.......++|+|+...- .+.|
T Consensus 46 ~~~~l~~l~~~i~~g~~vll~Gp~GtGKTtlar~ia~~l~~~--~~~~~~~~~~~~~~~~p~i~~~p~g~~~----~~~e 119 (604)
T 3k1j_A 46 QEHAVEVIKTAANQKRHVLLIGEPGTGKSMLGQAMAELLPTE--TLEDILVFPNPEDENMPRIKTVPACQGR----RIVE 119 (604)
T ss_dssp CHHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHTSCCS--SCEEEEEECCTTCTTSCEEEEEETTHHH----HHHH
T ss_pred chhhHhhccccccCCCEEEEEeCCCCCHHHHHHHHhccCCcc--cCCeEEEeCCcccccCCcEEEEecchHH----HHHH
Confidence 456899999999999999999999999999999999998764 2488999887655444568898875310 1111
Q ss_pred HHHHHhhccCCCCCCHHHHHHHH-------------------------HHHHHHcCCCccccccccCcccCCCCHHHHHH
Q 007554 148 TISYSARLRLPDKMPWSEKRTLV-------------------------ERTIIEMGLQDCADTVIGNWHLRGISGGERRR 202 (599)
Q Consensus 148 ~l~~~~~~~~~~~~~~~~~~~~v-------------------------~~~l~~l~L~~~~~~~vg~~~~~~LSGGerqR 202 (599)
.....+...... +....... ...-+.+|.-+.... ...++|+|++|+
T Consensus 120 ~~~~~~~~~~~~---r~~~~~~~~~~~~~nl~v~~~~~~~~~~v~~~~~~~~~L~G~~~~~~~-----~~g~~~~g~~~~ 191 (604)
T 3k1j_A 120 KYREKAKSQESV---KSSNMRLKSTVLVPKLLVDNCGRTKAPFIDATGAHAGALLGDVRHDPF-----QSGGLGTPAHER 191 (604)
T ss_dssp HHHHHHHHHTCC--------------CCCEEEECCTTCSSCCEEECTTCCHHHHHCEECCCCC---------CCCCGGGG
T ss_pred HHHHhhccchhh---hhhcccccccccccceeeccccCCCCCEEEcCCCCHHhcCceEEechh-----hcCCcccccccc
Confidence 111111100000 00000000 000011111110000 124699999999
Q ss_pred HHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHH
Q 007554 203 VSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRC 239 (599)
Q Consensus 203 v~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~L~~ 239 (599)
+..++....++.+||+||... |++.....+.+.|.+
T Consensus 192 i~~g~~~~a~~gvL~LDEi~~-l~~~~q~~Ll~~Le~ 227 (604)
T 3k1j_A 192 VEPGMIHRAHKGVLFIDEIAT-LSLKMQQSLLTAMQE 227 (604)
T ss_dssp EECCHHHHTTTSEEEETTGGG-SCHHHHHHHHHHHHH
T ss_pred ccCceeeecCCCEEEEechhh-CCHHHHHHHHHHHHc
Confidence 999999999999999999988 899888888888764
No 157
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=98.83 E-value=1.2e-10 Score=120.26 Aligned_cols=94 Identities=14% Similarity=0.223 Sum_probs=74.8
Q ss_pred EEEEeEEEEEEccCCcccceeeceEEEE-------------------eCCeEEEEECCCCCcHHHHHHHHHcCCC--CCC
Q 007554 52 LTWKDLTVMVTLSNGETHNVLEGLTGYA-------------------EPGTLTALMGPSGSGKSTLLDALSSRLA--SNA 110 (599)
Q Consensus 52 l~~~~ls~~~~~~~~~~~~iL~~vs~~i-------------------~~Ge~~aI~G~sGsGKSTLl~~L~G~~~--~~~ 110 (599)
|+++||++.| .++++++++.+ ++|+++||+||||||||||+++|+|++. |.
T Consensus 38 i~~~~v~~~y-------~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~g~iigI~G~~GsGKSTl~~~L~~~l~~~~~- 109 (308)
T 1sq5_A 38 LSLEEVAEIY-------LPLSRLLNFYISSNLRRQAVLEQFLGTNGQRIPYIISIAGSVAVGKSTTARVLQALLSRWPE- 109 (308)
T ss_dssp CCHHHHHHTH-------HHHHHHHHHHHHHHHHHHHHHHHHHTCC-CCCCEEEEEEECTTSSHHHHHHHHHHHHTTSTT-
T ss_pred cchHhHHHHH-------HHHHHHHHHHHhhhhhHHHHHHHHhccCCCCCCEEEEEECCCCCCHHHHHHHHHHHHhhCCC-
Confidence 6677777765 35889999887 8999999999999999999999999877 64
Q ss_pred CceeEEEE---CCEeCCC-CcCeEEEEcCCCCCCCCCCHHHHHHHHhhcc
Q 007554 111 FLSGTILL---NGHKTKL-SFGTAAYVTQDDNLIGTLTVRETISYSARLR 156 (599)
Q Consensus 111 ~~~G~I~~---~g~~~~~-~~~~~~yv~Q~~~l~~~lTV~e~l~~~~~~~ 156 (599)
+|+|.+ ||..... ..+.++++ |+..+++.+|+.+++.+...++
T Consensus 110 --~G~i~vi~~d~~~~~~~~~~~~~~v-q~~~~~~~~~~~~~~~~~~~l~ 156 (308)
T 1sq5_A 110 --HRRVELITTDGFLHPNQVLKERGLM-KKKGFPESYDMHRLVKFVSDLK 156 (308)
T ss_dssp --CCCEEEEEGGGGBCCHHHHHHHTCT-TCTTSGGGBCHHHHHHHHHHHT
T ss_pred --CCeEEEEecCCccCcHHHHHhCCEe-ecCCCCCCccHHHHHHHHHHHh
Confidence 899999 8865321 12346777 7777778899999998876553
No 158
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=98.82 E-value=3.3e-09 Score=111.40 Aligned_cols=154 Identities=19% Similarity=0.255 Sum_probs=90.6
Q ss_pred eeeceE--EEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCcCeEEEEcCCCCCCCCCCHHHH
Q 007554 71 VLEGLT--GYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLSFGTAAYVTQDDNLIGTLTVRET 148 (599)
Q Consensus 71 iL~~vs--~~i~~Ge~~aI~G~sGsGKSTLl~~L~G~~~~~~~~~G~I~~~g~~~~~~~~~~~yv~Q~~~l~~~lTV~e~ 148 (599)
-|+.+- +-+++|+++.|.||||||||||+..++...... . ..+.|+.-+..+- +.
T Consensus 48 ~LD~~Lg~GGl~~G~iv~I~G~pGsGKTtLal~la~~~~~~---g--------------~~vlyi~~E~~~~------~~ 104 (349)
T 2zr9_A 48 SLDVALGIGGLPRGRVIEIYGPESSGKTTVALHAVANAQAA---G--------------GIAAFIDAEHALD------PE 104 (349)
T ss_dssp HHHHHTSSSSEETTSEEEEEESTTSSHHHHHHHHHHHHHHT---T--------------CCEEEEESSCCCC------HH
T ss_pred HHHHHhccCCccCCeEEEEECCCCCCHHHHHHHHHHHHHhC---C--------------CeEEEEECCCCcC------HH
Confidence 344433 368899999999999999999988877543221 1 2345555443211 00
Q ss_pred HHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHHHHHHHHHhhC--CCEEEEeCCCCCC-
Q 007554 149 ISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMR--PRLLFLDEPTSGL- 225 (599)
Q Consensus 149 l~~~~~~~~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSGGerqRv~ia~aL~~~--p~illlDEPtsgL- 225 (599)
.+.+ +|+.. .+-.+- ...+. .+-+.++++++.+ |+++++||+++.+
T Consensus 105 --~a~~----------------------lG~~~-~~l~i~----~~~~~--e~~l~~~~~l~~~~~~~lIVIDsl~~l~~ 153 (349)
T 2zr9_A 105 --YAKK----------------------LGVDT-DSLLVS----QPDTG--EQALEIADMLVRSGALDIIVIDSVAALVP 153 (349)
T ss_dssp --HHHH----------------------TTCCG-GGCEEE----CCSSH--HHHHHHHHHHHTTTCCSEEEEECGGGCCC
T ss_pred --HHHH----------------------cCCCH-HHeEEe----cCCCH--HHHHHHHHHHHhcCCCCEEEEcChHhhcc
Confidence 1111 22210 000111 11233 2345678888765 9999999999998
Q ss_pred ---------CH---HHHHHHHHHHHHH----HhCCCEEEEEecCCch---------------HHHhccCeEEEEeCCeEE
Q 007554 226 ---------DS---AAAFFVTQTLRCL----SRDGRTVIASIHQPSS---------------EVFELFDRLYLLSGGKTV 274 (599)
Q Consensus 226 ---------D~---~~~~~i~~~L~~l----~~~g~tvi~~~H~p~~---------------~i~~~~D~v~~L~~G~iv 274 (599)
|+ ..++.+.+.++++ .+.|.|||+++|.... .+..++|.++.++.++++
T Consensus 154 ~~e~~~~~gd~~~~~q~r~~~~~l~~L~~~a~~~~~tVI~inh~~~~~~~~~~~p~~~~gg~~l~~~ad~~l~lrr~~~~ 233 (349)
T 2zr9_A 154 RAEIEGEMGDSHVGLQARLMSQALRKMTGALNNSGTTAIFINELREKIGVMFGSPETTTGGKALKFYASVRLDVRRIETL 233 (349)
T ss_dssp HHHHTTC----CCCHHHHHHHHHHHHHHHHHHHHTCEEEEEEECC-----------CCSSHHHHHHHCSEEEEEEEEEEE
T ss_pred hhhhccccccchhhHHHHHHHHHHHHHHHHHHHhCCEEEEEeccccccCcccCCCcccCCchHhhhccceEEEEEEeeee
Confidence 33 2233445555555 3458999999996421 245789999999877765
Q ss_pred EecC
Q 007554 275 YFGE 278 (599)
Q Consensus 275 ~~G~ 278 (599)
..|+
T Consensus 234 k~g~ 237 (349)
T 2zr9_A 234 KDGT 237 (349)
T ss_dssp CSSS
T ss_pred ecCc
Confidence 5444
No 159
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=98.76 E-value=1.2e-09 Score=104.09 Aligned_cols=39 Identities=26% Similarity=0.158 Sum_probs=34.5
Q ss_pred HHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHH
Q 007554 200 RRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCL 240 (599)
Q Consensus 200 rqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~L~~l 240 (599)
.++..+|++++.+|+++++| ||++|..+..++++.|.+.
T Consensus 151 ~~~~~~a~~l~~~~~~~~ld--~Sald~~~v~~l~~~l~~~ 189 (191)
T 1oix_A 151 AVPTDEARAFAEKNGLSFIE--TSALDSTNVEAAFQTILTE 189 (191)
T ss_dssp CSCHHHHHHHHHHTTCEEEE--CCTTTCTTHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHcCCEEEE--EeCCCCCCHHHHHHHHHHH
Confidence 34578899999999999999 9999999999999988653
No 160
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=98.76 E-value=3.4e-12 Score=129.65 Aligned_cols=122 Identities=16% Similarity=0.206 Sum_probs=81.0
Q ss_pred cceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCC-C----CcCeEEEEcCCCC-CCCC
Q 007554 69 HNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTK-L----SFGTAAYVTQDDN-LIGT 142 (599)
Q Consensus 69 ~~iL~~vs~~i~~Ge~~aI~G~sGsGKSTLl~~L~G~~~~~~~~~G~I~~~g~~~~-~----~~~~~~yv~Q~~~-l~~~ 142 (599)
..+++++++.+++| ++|+||||+|||||+++|++... .|.|.++|.+.. . ..+.+++++|+.. ..+.
T Consensus 62 ~~~l~~~~~~~~~g--vll~Gp~GtGKTtl~~~i~~~~~-----~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 134 (278)
T 1iy2_A 62 PSRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR-----VPFITASGSDFVEMFVGVGAARVRDLFETAKRHAPC 134 (278)
T ss_dssp HHHHHHTTCCCCCE--EEEECCTTSSHHHHHHHHHHHTT-----CCEEEEEHHHHHHSTTTHHHHHHHHHHHHHHTSCSE
T ss_pred HHHHHHcCCCCCCe--EEEECCCcChHHHHHHHHHHHcC-----CCEEEecHHHHHHHHhhHHHHHHHHHHHHHHhcCCc
Confidence 46789999999999 99999999999999999999764 588999876421 1 1123566777643 4566
Q ss_pred CCHHHHHHHHhhccCCC-CCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHHHHHHHHHhhCCCE
Q 007554 143 LTVRETISYSARLRLPD-KMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRL 215 (599)
Q Consensus 143 lTV~e~l~~~~~~~~~~-~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSGGerqRv~ia~aL~~~p~i 215 (599)
+++.|++......+... .....+..+.+.+++ ..|||||+||+.+++++..+|++
T Consensus 135 i~~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll------------------~~lsgg~~~~~~i~~a~t~~p~~ 190 (278)
T 1iy2_A 135 IVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLL------------------VEMDGFEKDTAIVVMAATNRPDI 190 (278)
T ss_dssp EEEEETHHHHHCC--------CHHHHHHHHHHH------------------HHHTTCCTTCCEEEEEEESCTTS
T ss_pred EEehhhhHhhhcccccccCCcchHHHHHHHHHH------------------HHHhCCCCCCCEEEEEecCCchh
Confidence 77777774332211100 000112222232222 24899999999999999999875
No 161
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=98.73 E-value=4.9e-12 Score=126.54 Aligned_cols=122 Identities=16% Similarity=0.205 Sum_probs=79.9
Q ss_pred cceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCC-C----CcCeEEEEcCCC-CCCCC
Q 007554 69 HNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTK-L----SFGTAAYVTQDD-NLIGT 142 (599)
Q Consensus 69 ~~iL~~vs~~i~~Ge~~aI~G~sGsGKSTLl~~L~G~~~~~~~~~G~I~~~g~~~~-~----~~~~~~yv~Q~~-~l~~~ 142 (599)
..+++++++.+++| ++|+||||+|||||+++|++... .|.|.++|.+.. . ..+.+++++|+. ...+.
T Consensus 38 ~~~~~~~~~~~~~g--~ll~G~~G~GKTtl~~~i~~~~~-----~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 110 (254)
T 1ixz_A 38 PSRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR-----VPFITASGSDFVEMFVGVGAARVRDLFETAKRHAPC 110 (254)
T ss_dssp HHHHHHTTCCCCSE--EEEECCTTSSHHHHHHHHHHHTT-----CCEEEEEHHHHHHSCTTHHHHHHHHHHHHHTTSSSE
T ss_pred HHHHHHcCCCCCCe--EEEECCCCCCHHHHHHHHHHHhC-----CCEEEeeHHHHHHHHhhHHHHHHHHHHHHHHhcCCe
Confidence 46799999999999 99999999999999999999764 588988876421 1 112355667764 24566
Q ss_pred CCHHHHHHHHhhccCCC-CCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHHHHHHHHHhhCCCE
Q 007554 143 LTVRETISYSARLRLPD-KMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRL 215 (599)
Q Consensus 143 lTV~e~l~~~~~~~~~~-~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSGGerqRv~ia~aL~~~p~i 215 (599)
+++.|++......+... .....+..+.+.+++ ..|||||+||+.|++++..+|++
T Consensus 111 i~~~Deid~l~~~~~~~~~~~~~~~~~~~~~ll------------------~~l~g~~~~~~~i~~a~t~~p~~ 166 (254)
T 1ixz_A 111 IVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLL------------------VEMDGFEKDTAIVVMAATNRPDI 166 (254)
T ss_dssp EEEEETHHHHHC---------CHHHHHHHHHHH------------------HHHHTCCTTCCEEEEEEESCGGG
T ss_pred EEEehhhhhhhcccCccccccchHHHHHHHHHH------------------HHHhCCCCCCCEEEEEccCCchh
Confidence 67777774322111100 001112222233332 24899999999999999999976
No 162
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=98.72 E-value=6.1e-10 Score=107.04 Aligned_cols=66 Identities=23% Similarity=0.290 Sum_probs=44.3
Q ss_pred EEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCC-----CCcCeEEEEcCCCCCCCCCCHHHH
Q 007554 76 TGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTK-----LSFGTAAYVTQDDNLIGTLTVRET 148 (599)
Q Consensus 76 s~~i~~Ge~~aI~G~sGsGKSTLl~~L~G~~~~~~~~~G~I~~~g~~~~-----~~~~~~~yv~Q~~~l~~~lTV~e~ 148 (599)
|+++++|++++|+||||||||||+++|+|+.+ .+.+++.... .....++|++|++..++.+++.++
T Consensus 1 s~~m~~g~ii~l~Gp~GsGKSTl~~~L~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 71 (205)
T 3tr0_A 1 SNAMNKANLFIISAPSGAGKTSLVRALVKALA-------EIKISISHTTRPKRPGDQEGVDYFFIDETRFQAMVKEGA 71 (205)
T ss_dssp ----CCCCEEEEECCTTSCHHHHHHHHHHHSS-------SEEECCCEECSCCCTTCCBTTTBEECCHHHHHHHHHHTC
T ss_pred CCcCCCCcEEEEECcCCCCHHHHHHHHHhhCC-------CeEEeceeccCCCchhHhcCceEEeccHHHHHHHHhcCc
Confidence 56678999999999999999999999999853 2455554321 112457899998765555444443
No 163
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=98.55 E-value=5.2e-08 Score=102.86 Aligned_cols=149 Identities=17% Similarity=0.168 Sum_probs=88.7
Q ss_pred EEEEECCCCCcHHHHHHHHHcCCCCC--------CCceeEEEECCEeCCCCcCeEEEEcCCCCCCCCCCHH---HHHHHH
Q 007554 84 LTALMGPSGSGKSTLLDALSSRLASN--------AFLSGTILLNGHKTKLSFGTAAYVTQDDNLIGTLTVR---ETISYS 152 (599)
Q Consensus 84 ~~aI~G~sGsGKSTLl~~L~G~~~~~--------~~~~G~I~~~g~~~~~~~~~~~yv~Q~~~l~~~lTV~---e~l~~~ 152 (599)
.++|+|++|||||||+|.|+|..... ...+|.|.++|.+... ....|++.|.+. ..|. .++...
T Consensus 181 ~V~lvG~~naGKSTLln~L~~~~~~~~~~~~~T~d~~~~~i~~~g~~v~l-~DT~G~i~~lp~----~lve~f~~tl~~~ 255 (364)
T 2qtf_A 181 SIGIVGYTNSGKTSLFNSLTGLTQKVDTKLFTTMSPKRYAIPINNRKIML-VDTVGFIRGIPP----QIVDAFFVTLSEA 255 (364)
T ss_dssp EEEEECBTTSSHHHHHHHHHCC-----------CCSCEEEEEETTEEEEE-EECCCBCSSCCG----GGHHHHHHHHHGG
T ss_pred EEEEECCCCCCHHHHHHHHHCCCccccCCcccccCCEEEEEEECCEEEEE-EeCCCchhcCCH----HHHHHHHHHHHHH
Confidence 49999999999999999999976421 0347999999865321 123455544321 1121 111111
Q ss_pred hh--c--c-CCCCCCH---HHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHHHHHH----HHH-hhCCCEEEEe
Q 007554 153 AR--L--R-LPDKMPW---SEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIA----LEI-LMRPRLLFLD 219 (599)
Q Consensus 153 ~~--~--~-~~~~~~~---~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSGGerqRv~ia----~aL-~~~p~illlD 219 (599)
.. . . ....... .+..+.+.++++.+++.+..--.|++ +...+|+|+++|+.++ +++ ..+|++
T Consensus 256 ~~aD~il~VvD~s~~~~~~~~~~~~~~~~L~~l~~~~~p~ilV~N-K~Dl~~~~~~~~~~~~~~l~~~l~~~~~~~---- 330 (364)
T 2qtf_A 256 KYSDALILVIDSTFSENLLIETLQSSFEILREIGVSGKPILVTLN-KIDKINGDLYKKLDLVEKLSKELYSPIFDV---- 330 (364)
T ss_dssp GGSSEEEEEEETTSCHHHHHHHHHHHHHHHHHHTCCSCCEEEEEE-CGGGCCSCHHHHHHHHHHHHHHHCSCEEEE----
T ss_pred HhCCEEEEEEECCCCcchHHHHHHHHHHHHHHhCcCCCCEEEEEE-CCCCCCchHHHHHHHHHHHHHHhcCCCCcE----
Confidence 00 0 0 0001111 22234466778888776544333343 3345788888988887 554 334444
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHh
Q 007554 220 EPTSGLDSAAAFFVTQTLRCLSR 242 (599)
Q Consensus 220 EPtsgLD~~~~~~i~~~L~~l~~ 242 (599)
+|+|++|......+.+.|.++..
T Consensus 331 ~~~SA~~g~gi~~L~~~I~~~l~ 353 (364)
T 2qtf_A 331 IPISALKRTNLELLRDKIYQLAT 353 (364)
T ss_dssp EECBTTTTBSHHHHHHHHHHHHH
T ss_pred EEEECCCCcCHHHHHHHHHHHhc
Confidence 89999999999999999987654
No 164
>1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12
Probab=98.54 E-value=2.4e-09 Score=105.55 Aligned_cols=58 Identities=22% Similarity=0.257 Sum_probs=41.1
Q ss_pred eeEEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeC
Q 007554 50 ARLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKT 123 (599)
Q Consensus 50 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~G~sGsGKSTLl~~L~G~~~~~~~~~G~I~~~g~~~ 123 (599)
..|+++|++..+. . ++++.+ ++++|+|||||||||||++|+|.+.|. +|+|.++|.+.
T Consensus 8 ~~l~l~~~~~~~~------~------~~~~~~-~~~~i~GpnGsGKSTll~~i~g~~~~~---~G~i~~~g~~~ 65 (227)
T 1qhl_A 8 RSLTLINWNGFFA------R------TFDLDE-LVTTLSGGNGAGKSTTMAAFVTALIPD---LTLLHFRNTTE 65 (227)
T ss_dssp EEEEEEEETTEEE------E------EECHHH-HHHHHHSCCSHHHHHHHHHHHHHHSCC---TTTC-------
T ss_pred eEEEEEeeecccC------C------EEEEcC-cEEEEECCCCCCHHHHHHHHhcccccC---CCeEEECCEEc
Confidence 4577777765431 1 456666 899999999999999999999999885 89999999754
No 165
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=98.49 E-value=2.4e-08 Score=98.16 Aligned_cols=40 Identities=23% Similarity=0.280 Sum_probs=23.3
Q ss_pred cceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHH-cCCCC
Q 007554 69 HNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALS-SRLAS 108 (599)
Q Consensus 69 ~~iL~~vs~~i~~Ge~~aI~G~sGsGKSTLl~~L~-G~~~~ 108 (599)
.+..+++|+++++|++++|+||||||||||+++|+ |+.++
T Consensus 14 ~~~~~~~sl~v~~G~ii~l~Gp~GsGKSTl~~~L~~~~~~~ 54 (231)
T 3lnc_A 14 AQTQGPGSMLKSVGVILVLSSPSGCGKTTVANKLLEKQKNN 54 (231)
T ss_dssp --------CCEECCCEEEEECSCC----CHHHHHHC----C
T ss_pred hcccCCCCcccCCCCEEEEECCCCCCHHHHHHHHHhcCCCC
Confidence 45789999999999999999999999999999999 98643
No 166
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=98.48 E-value=1.4e-07 Score=102.69 Aligned_cols=58 Identities=26% Similarity=0.361 Sum_probs=43.6
Q ss_pred HHHHHHHHHHHHHhhCCCEEEEeCC----------CCCCCHHHHHHHHHHHHHHH----hCCCEEEEEecCC
Q 007554 197 GGERRRVSIALEILMRPRLLFLDEP----------TSGLDSAAAFFVTQTLRCLS----RDGRTVIASIHQP 254 (599)
Q Consensus 197 GGerqRv~ia~aL~~~p~illlDEP----------tsgLD~~~~~~i~~~L~~l~----~~g~tvi~~~H~p 254 (599)
|++++|-.++++....|.|||+||+ ++|.|......+.++|..+- ..+..||.+||+|
T Consensus 93 ~~~~~r~lf~~A~~~~p~ILfIDEid~l~~~r~~~~~g~~~~~~~~l~~LL~~ld~~~~~~~viVIaaTn~~ 164 (476)
T 2ce7_A 93 GAARVRDLFAQAKAHAPCIVFIDEIDAVGRHRGAGLGGGHDEREQTLNQLLVEMDGFDSKEGIIVMAATNRP 164 (476)
T ss_dssp HHHHHHHHHHHHHHTCSEEEEEETGGGTCCC---------CHHHHHHHHHHHHHHHSCGGGTEEEEEEESCG
T ss_pred cHHHHHHHHHHHHhcCCCEEEEechhhhhhhcccccCcCcHHHHHHHHHHHHHHhccCCCCCEEEEEecCCh
Confidence 6788888999999999999999999 44677777777777776663 2467899999997
No 167
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=98.45 E-value=5.5e-08 Score=92.96 Aligned_cols=37 Identities=22% Similarity=0.150 Sum_probs=32.6
Q ss_pred HHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHH
Q 007554 203 VSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLS 241 (599)
Q Consensus 203 v~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~L~~l~ 241 (599)
...|++++.+|+++++| ||++|.....++++.|.+..
T Consensus 130 ~~~a~~l~~~~~~~~~d--~Sal~~~~i~~l~~~l~~~~ 166 (199)
T 2f9l_A 130 TDEARAFAEKNNLSFIE--TSALDSTNVEEAFKNILTEI 166 (199)
T ss_dssp HHHHHHHHHHTTCEEEE--CCTTTCTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCeEEE--EeCCCCCCHHHHHHHHHHHH
Confidence 45689999999999999 99999999999999887653
No 168
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=98.43 E-value=6.9e-08 Score=101.31 Aligned_cols=38 Identities=24% Similarity=0.293 Sum_probs=30.8
Q ss_pred eeeceE--EEEeCCeEEEEECCCCCcHHHHHHHHHcCCCC
Q 007554 71 VLEGLT--GYAEPGTLTALMGPSGSGKSTLLDALSSRLAS 108 (599)
Q Consensus 71 iL~~vs--~~i~~Ge~~aI~G~sGsGKSTLl~~L~G~~~~ 108 (599)
-|+.+- +=+++|+++.|.||||||||||+..+++...+
T Consensus 48 ~LD~~Lg~GGi~~G~i~~I~GppGsGKSTLal~la~~~~~ 87 (356)
T 3hr8_A 48 AIDIATGVGGYPRGRIVEIFGQESSGKTTLALHAIAEAQK 87 (356)
T ss_dssp HHHHHTSSSSEETTEEEEEEESTTSSHHHHHHHHHHHHHH
T ss_pred HHHHHhccCCccCCcEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 354443 36899999999999999999999999976543
No 169
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=98.39 E-value=3.5e-07 Score=105.72 Aligned_cols=73 Identities=16% Similarity=0.131 Sum_probs=58.5
Q ss_pred CCCCHHHHHHHHHHHHHhhCCCEEEEeCCCC-CCCHHHHHHHHHHHHHHHhCCCEEEEE-ecCCchHHHhccCeEE
Q 007554 193 RGISGGERRRVSIALEILMRPRLLFLDEPTS-GLDSAAAFFVTQTLRCLSRDGRTVIAS-IHQPSSEVFELFDRLY 266 (599)
Q Consensus 193 ~~LSGGerqRv~ia~aL~~~p~illlDEPts-gLD~~~~~~i~~~L~~l~~~g~tvi~~-~H~p~~~i~~~~D~v~ 266 (599)
.-+|+|+.+|..++..++.+++++++|||.. +||......+++.+.....+.++|+++ ||++ ..+.+++++..
T Consensus 189 ~v~T~G~l~r~l~~~~~l~~~~~lIlDEah~R~ld~d~~~~~l~~l~~~~~~~~iIl~SAT~~~-~~l~~~~~~~~ 263 (773)
T 2xau_A 189 KYMTDGMLLREAMEDHDLSRYSCIILDEAHERTLATDILMGLLKQVVKRRPDLKIIIMSATLDA-EKFQRYFNDAP 263 (773)
T ss_dssp EEEEHHHHHHHHHHSTTCTTEEEEEECSGGGCCHHHHHHHHHHHHHHHHCTTCEEEEEESCSCC-HHHHHHTTSCC
T ss_pred EEECHHHHHHHHhhCccccCCCEEEecCccccccchHHHHHHHHHHHHhCCCceEEEEeccccH-HHHHHHhcCCC
Confidence 3479999999999999999999999999996 999888777777776654455677775 8875 56777777533
No 170
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=98.35 E-value=1.2e-08 Score=98.15 Aligned_cols=41 Identities=27% Similarity=0.374 Sum_probs=31.9
Q ss_pred EEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeC
Q 007554 76 TGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKT 123 (599)
Q Consensus 76 s~~i~~Ge~~aI~G~sGsGKSTLl~~L~G~~~~~~~~~G~I~~~g~~~ 123 (599)
.+..++|++++|+||||||||||+++|+|.+ |.+.++|.+.
T Consensus 23 ~m~~~~g~~i~l~G~~GsGKSTl~~~L~~~~-------g~~~i~~d~~ 63 (200)
T 4eun_A 23 MMTGEPTRHVVVMGVSGSGKTTIAHGVADET-------GLEFAEADAF 63 (200)
T ss_dssp -----CCCEEEEECCTTSCHHHHHHHHHHHH-------CCEEEEGGGG
T ss_pred hhcCCCCcEEEEECCCCCCHHHHHHHHHHhh-------CCeEEccccc
Confidence 3566789999999999999999999999864 7788887653
No 171
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=98.30 E-value=3.4e-07 Score=95.38 Aligned_cols=130 Identities=12% Similarity=0.154 Sum_probs=84.1
Q ss_pred cceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCcCeEEEEcCCCCCCCCCCHHHH
Q 007554 69 HNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLSFGTAAYVTQDDNLIGTLTVRET 148 (599)
Q Consensus 69 ~~iL~~vs~~i~~Ge~~aI~G~sGsGKSTLl~~L~G~~~~~~~~~G~I~~~g~~~~~~~~~~~yv~Q~~~l~~~lTV~e~ 148 (599)
..-|+.+.+-+.+|+++.|.|++|+|||||+.-++..... .| ..+.|+.=+ ++..+.
T Consensus 33 ~~~LD~~~gGl~~G~LiiIaG~pG~GKTt~al~ia~~~a~----------~g-------~~Vl~fSlE------ms~~ql 89 (338)
T 4a1f_A 33 FVQLDNYTSGFNKGSLVIIGARPSMGKTSLMMNMVLSALN----------DD-------RGVAVFSLE------MSAEQL 89 (338)
T ss_dssp CHHHHHHHCSBCTTCEEEEEECTTSCHHHHHHHHHHHHHH----------TT-------CEEEEEESS------SCHHHH
T ss_pred ChHHHHHhcCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHH----------cC-------CeEEEEeCC------CCHHHH
Confidence 3457777777999999999999999999999888754321 11 234444322 233332
Q ss_pred HHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHH
Q 007554 149 ISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSA 228 (599)
Q Consensus 149 l~~~~~~~~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSGGerqRv~ia~aL~~~p~illlDEPtsgLD~~ 228 (599)
. .+.......+.+.+..+ ..||++|++|+..|...+.++++++.|+|...
T Consensus 90 ~------------------~Rlls~~~~v~~~~l~~--------g~Ls~~e~~~l~~a~~~l~~~~l~I~d~~~~s---- 139 (338)
T 4a1f_A 90 A------------------LRALSDLTSINMHDLES--------GRLDDDQWENLAKCFDHLSQKKLFFYDKSYVR---- 139 (338)
T ss_dssp H------------------HHHHHHHHCCCHHHHHH--------TCCCHHHHHHHHHHHHHHHHSCEEEECCTTCC----
T ss_pred H------------------HHHHHHhhCCCHHHHhc--------CCCCHHHHHHHHHHHHHHhcCCeEEeCCCCCc----
Confidence 2 22222222222222211 24999999999999999999999999998654
Q ss_pred HHHHHHHHHHHHHh-C-CCEEEEEec
Q 007554 229 AAFFVTQTLRCLSR-D-GRTVIASIH 252 (599)
Q Consensus 229 ~~~~i~~~L~~l~~-~-g~tvi~~~H 252 (599)
..++...++++.+ . |..+|++-|
T Consensus 140 -i~~i~~~ir~l~~~~gg~~lIVIDy 164 (338)
T 4a1f_A 140 -IEQIRLQLRKLKSQHKELGIAFIDY 164 (338)
T ss_dssp -HHHHHHHHHHHHHHCTTEEEEEEEE
T ss_pred -HHHHHHHHHHHHHhcCCCCEEEEec
Confidence 3366667777765 4 567777643
No 172
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=98.27 E-value=6.5e-08 Score=96.76 Aligned_cols=53 Identities=26% Similarity=0.329 Sum_probs=36.6
Q ss_pred eEEEEeE-EEEEEccCCcccceeeceEEEEeC---CeEEEEECCCCCcHHHHHHHHHcCCC
Q 007554 51 RLTWKDL-TVMVTLSNGETHNVLEGLTGYAEP---GTLTALMGPSGSGKSTLLDALSSRLA 107 (599)
Q Consensus 51 ~l~~~~l-s~~~~~~~~~~~~iL~~vs~~i~~---Ge~~aI~G~sGsGKSTLl~~L~G~~~ 107 (599)
.++++|+ ++.+. +.+.+|+|+|+++++ |+.++|+|++||||||+.++|++.+.
T Consensus 17 ~l~~~~~~~~~~~----~~~~~l~~~~~~i~~~l~g~~i~l~G~~GsGKSTl~~~La~~lg 73 (250)
T 3nwj_A 17 LLETGSLLHSPFD----EEQQILKKKAEEVKPYLNGRSMYLVGMMGSGKTTVGKIMARSLG 73 (250)
T ss_dssp -------------------CHHHHHHHHTTHHHHTTCCEEEECSTTSCHHHHHHHHHHHHT
T ss_pred ceEEcceeeEEec----CcchhhhhhhhhhhhhcCCCEEEEECCCCCCHHHHHHHHHHhcC
Confidence 5899999 88872 346799999999999 99999999999999999999998653
No 173
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=98.25 E-value=1.3e-06 Score=91.73 Aligned_cols=60 Identities=12% Similarity=0.106 Sum_probs=48.0
Q ss_pred CCCCHHHHHHHHHHHHHhhCCCEEEEe-CCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEe--cCC
Q 007554 193 RGISGGERRRVSIALEILMRPRLLFLD-EPTSGLDSAAAFFVTQTLRCLSRDGRTVIASI--HQP 254 (599)
Q Consensus 193 ~~LSGGerqRv~ia~aL~~~p~illlD-EPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~--H~p 254 (599)
..+|+||+|++. +.+...++-++++| +|++++|......+++.+.+... +..+|++. ||.
T Consensus 230 ~~~~~~~~~~~~-~~~~~ad~illV~D~s~~~~~~~~~~~~~~~~i~~~~~-~~piilV~NK~Dl 292 (357)
T 2e87_A 230 SERNEIEKQAIL-ALRYLGNLIIYIFDPSEHCGFPLEEQIHLFEEVHGEFK-DLPFLVVINKIDV 292 (357)
T ss_dssp TTSCHHHHHHHH-GGGGTCSEEEEEECTTCTTSSCHHHHHHHHHHHHHHTT-TSCEEEEECCTTT
T ss_pred hhhhHHHHHHHH-HHHhcCCEEEEEEeCCccccCCHHHHHHHHHHHHHhcC-CCCEEEEEECccc
Confidence 358999998876 55556777889999 99999999998888888777643 67788887 774
No 174
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=98.15 E-value=1.5e-06 Score=81.63 Aligned_cols=38 Identities=32% Similarity=0.393 Sum_probs=34.2
Q ss_pred cee--eceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCC
Q 007554 70 NVL--EGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLAS 108 (599)
Q Consensus 70 ~iL--~~vs~~i~~Ge~~aI~G~sGsGKSTLl~~L~G~~~~ 108 (599)
..+ +++++.+.+| +++|+||||||||||+++|.+.+.+
T Consensus 13 ~~~~~~~~~~~~~~g-~~~i~G~NGsGKStll~ai~~~l~~ 52 (182)
T 3kta_A 13 KSYGNKKVVIPFSKG-FTAIVGANGSGKSNIGDAILFVLGG 52 (182)
T ss_dssp GGGCSSCEEEECCSS-EEEEEECTTSSHHHHHHHHHHHTTC
T ss_pred EeecCccEEEecCCC-cEEEECCCCCCHHHHHHHHHHHHcC
Confidence 356 7899999999 9999999999999999999987765
No 175
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=98.14 E-value=9.8e-08 Score=91.70 Aligned_cols=51 Identities=31% Similarity=0.418 Sum_probs=41.6
Q ss_pred cceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEE--EECCEeC
Q 007554 69 HNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTI--LLNGHKT 123 (599)
Q Consensus 69 ~~iL~~vs~~i~~Ge~~aI~G~sGsGKSTLl~~L~G~~~~~~~~~G~I--~~~g~~~ 123 (599)
....+..++..++|++++|+||||||||||+++|++.+.. .|.+ .++|.+.
T Consensus 12 ~~~~~~~~~~~~~g~~i~l~G~sGsGKSTl~~~La~~l~~----~G~~~~~~d~d~~ 64 (200)
T 3uie_A 12 VEKVDRQRLLDQKGCVIWVTGLSGSGKSTLACALNQMLYQ----KGKLCYILDGDNV 64 (200)
T ss_dssp CCHHHHHHHHTSCCEEEEEECSTTSSHHHHHHHHHHHHHH----TTCCEEEEEHHHH
T ss_pred cCHHHHHHhcCCCCeEEEEECCCCCCHHHHHHHHHHHHHh----cCceEEEecCchh
Confidence 4456677777789999999999999999999999998752 5766 7877643
No 176
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=98.13 E-value=3.8e-07 Score=94.47 Aligned_cols=49 Identities=20% Similarity=0.216 Sum_probs=42.4
Q ss_pred eeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeC
Q 007554 72 LEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKT 123 (599)
Q Consensus 72 L~~vs~~i~~Ge~~aI~G~sGsGKSTLl~~L~G~~~~~~~~~G~I~~~g~~~ 123 (599)
++++++..++|++++|+|+||+||||++..|++.+.+. .|+|.+.+.+.
T Consensus 95 ~~~l~~~~~~~~vI~ivG~~G~GKTT~~~~LA~~l~~~---g~kVllid~D~ 143 (320)
T 1zu4_A 95 KYRIDFKENRLNIFMLVGVNGTGKTTSLAKMANYYAEL---GYKVLIAAADT 143 (320)
T ss_dssp -CCCCCCTTSCEEEEEESSTTSSHHHHHHHHHHHHHHT---TCCEEEEECCC
T ss_pred ccCccccCCCCeEEEEECCCCCCHHHHHHHHHHHHHHC---CCeEEEEeCCC
Confidence 47899999999999999999999999999999988764 68898877653
No 177
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=98.11 E-value=1.3e-08 Score=111.44 Aligned_cols=128 Identities=16% Similarity=0.196 Sum_probs=81.6
Q ss_pred cceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCC-----cCeEEEEcCCCC-CCCC
Q 007554 69 HNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLS-----FGTAAYVTQDDN-LIGT 142 (599)
Q Consensus 69 ~~iL~~vs~~i~~Ge~~aI~G~sGsGKSTLl~~L~G~~~~~~~~~G~I~~~g~~~~~~-----~~~~~yv~Q~~~-l~~~ 142 (599)
..+++++++.+++| +.|+||||+|||||+++|++... .+.|.++|.+.... .+.+..++|+.. ..|.
T Consensus 53 ~~~~~~lg~~ip~G--vLL~GppGtGKTtLaraIa~~~~-----~~~i~i~g~~~~~~~~g~~~~~v~~lfq~a~~~~p~ 125 (499)
T 2dhr_A 53 PSRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR-----VPFITASGSDFVEMFVGVGAARVRDLFETAKRHAPC 125 (499)
T ss_dssp GGGTTTTSCCCCSE--EEEECSSSSSHHHHHHHHHHHTT-----CCEEEEEGGGGTSSCTTHHHHHHHHHTTTSSSSSSC
T ss_pred hhhhhhccCCCCce--EEEECCCCCCHHHHHHHHHHHhC-----CCEEEEehhHHHHhhhhhHHHHHHHHHHHHHhcCCC
Confidence 45788999999999 99999999999999999999763 57888888653211 122445566542 3444
Q ss_pred CCHHHHHHHHhhccCC-CCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHHHHHHHHHhhCCCEEEEeCC
Q 007554 143 LTVRETISYSARLRLP-DKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEP 221 (599)
Q Consensus 143 lTV~e~l~~~~~~~~~-~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSGGerqRv~ia~aL~~~p~illlDEP 221 (599)
+.+.|++......+.. ......+..+.+.+++. .|||||+|+..|+++...+|++ |||+
T Consensus 126 il~IDEId~l~~~r~~~~~~~~~e~~~~l~~LL~------------------~Ldg~~~~~~viviAatn~p~~--LD~a 185 (499)
T 2dhr_A 126 IVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLV------------------EMDGFEKDTAIVVMAATNRPDI--LDPA 185 (499)
T ss_dssp EEEEECGGGTCCCSSSSTTTSSHHHHHHHHHHHH------------------HGGGCCSSCCCEEEECCSCGGG--SCTT
T ss_pred EEEEehHHHHHHhhccCcCCCcHHHHHHHHHHHH------------------HhcccccCccEEEEEecCChhh--cCcc
Confidence 4455554321111100 00012233333444332 3788899998888999999987 7888
Q ss_pred CC
Q 007554 222 TS 223 (599)
Q Consensus 222 ts 223 (599)
..
T Consensus 186 Ll 187 (499)
T 2dhr_A 186 LL 187 (499)
T ss_dssp TS
T ss_pred cc
Confidence 64
No 178
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=98.09 E-value=6.4e-07 Score=84.97 Aligned_cols=27 Identities=41% Similarity=0.610 Sum_probs=24.8
Q ss_pred CeEEEEECCCCCcHHHHHHHHHcCCCC
Q 007554 82 GTLTALMGPSGSGKSTLLDALSSRLAS 108 (599)
Q Consensus 82 Ge~~aI~G~sGsGKSTLl~~L~G~~~~ 108 (599)
|++++|+||||||||||+++|+|++++
T Consensus 1 ~~ii~l~GpsGaGKsTl~~~L~~~~~~ 27 (186)
T 3a00_A 1 SRPIVISGPSGTGKSTLLKKLFAEYPD 27 (186)
T ss_dssp CCCEEEESSSSSSHHHHHHHHHHHCGG
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhCCc
Confidence 578999999999999999999998864
No 179
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=98.08 E-value=1.4e-06 Score=83.49 Aligned_cols=40 Identities=28% Similarity=0.202 Sum_probs=24.8
Q ss_pred cccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCC
Q 007554 67 ETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRL 106 (599)
Q Consensus 67 ~~~~iL~~vs~~i~~Ge~~aI~G~sGsGKSTLl~~L~G~~ 106 (599)
....+++|||+.+++|++++|+|++||||||+.+.|++.+
T Consensus 10 ~~~~~~~~~~~~~~~~~~i~l~G~~GsGKsTl~~~La~~l 49 (199)
T 3vaa_A 10 GVDLGTENLYFQSNAMVRIFLTGYMGAGKTTLGKAFARKL 49 (199)
T ss_dssp --------------CCCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCCCCCceeEecCCCCEEEEEcCCCCCHHHHHHHHHHHc
Confidence 3466899999999999999999999999999999999765
No 180
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=98.06 E-value=9.9e-06 Score=84.93 Aligned_cols=43 Identities=9% Similarity=-0.090 Sum_probs=35.3
Q ss_pred hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh---CCCEEEEEecCC
Q 007554 211 MRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSR---DGRTVIASIHQP 254 (599)
Q Consensus 211 ~~p~illlDEPtsgLD~~~~~~i~~~L~~l~~---~g~tvi~~~H~p 254 (599)
.+|.++++||+... |......+.+.+.++.. .+.++|+++|++
T Consensus 124 ~~~~vlilDE~~~l-~~~~~~~L~~~~~~~~~~~~~~~~iI~~~~~~ 169 (389)
T 1fnn_A 124 DLYMFLVLDDAFNL-APDILSTFIRLGQEADKLGAFRIALVIVGHND 169 (389)
T ss_dssp TCCEEEEEETGGGS-CHHHHHHHHHHTTCHHHHSSCCEEEEEEESST
T ss_pred CCeEEEEEECcccc-chHHHHHHHHHHHhCCCCCcCCEEEEEEECCc
Confidence 45889999999876 88888888888876655 578899999986
No 181
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=98.05 E-value=2.2e-06 Score=81.88 Aligned_cols=32 Identities=34% Similarity=0.441 Sum_probs=27.4
Q ss_pred EEEeCCeEEEEECCCCCcHHHHHHHHHcCCCC
Q 007554 77 GYAEPGTLTALMGPSGSGKSTLLDALSSRLAS 108 (599)
Q Consensus 77 ~~i~~Ge~~aI~G~sGsGKSTLl~~L~G~~~~ 108 (599)
+++++|++++|+||||||||||+++|++.+.+
T Consensus 1 m~i~~g~~i~l~G~~GsGKSTl~~~L~~~~~~ 32 (207)
T 2j41_A 1 MDNEKGLLIVLSGPSGVGKGTVRKRIFEDPST 32 (207)
T ss_dssp ---CCCCEEEEECSTTSCHHHHHHHHHHCTTC
T ss_pred CCCCCCCEEEEECCCCCCHHHHHHHHHHhhCC
Confidence 35789999999999999999999999999855
No 182
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=98.03 E-value=2.4e-06 Score=82.07 Aligned_cols=70 Identities=14% Similarity=0.099 Sum_probs=41.1
Q ss_pred CHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchH-HHhccCeEEEEe
Q 007554 196 SGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSE-VFELFDRLYLLS 269 (599)
Q Consensus 196 SGGerqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~p~~~-i~~~~D~v~~L~ 269 (599)
+.|+.+|..++.....+|+.+..+ ++.++|.....+.+.+... .+.++|+.+|...+. ....||.+++++
T Consensus 61 ~~g~~~r~~l~~~~f~~~~~~~~l--~~~~~p~v~~~~~~~~~~~--~~~~vv~~~~~l~e~~~~~~~d~vi~l~ 131 (206)
T 1jjv_A 61 EQGELNRAALRERVFNHDEDKLWL--NNLLHPAIRERMKQKLAEQ--TAPYTLFVVPLLIENKLTALCDRILVVD 131 (206)
T ss_dssp -----CHHHHHHHHHTCHHHHHHH--HHHHHHHHHHHHHHHHHTC--CSSEEEEECTTTTTTTCGGGCSEEEEEE
T ss_pred cCccccHHHHHHHHhCCHHHHHHH--HhccCHHHHHHHHHHHHhc--CCCEEEEEechhhhcCcHhhCCEEEEEE
Confidence 678889999998888887644332 3345555555555444332 356888888875321 256789888875
No 183
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=98.03 E-value=1.4e-05 Score=83.79 Aligned_cols=57 Identities=14% Similarity=0.086 Sum_probs=40.0
Q ss_pred CCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCC-CEEEEEec
Q 007554 195 ISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDG-RTVIASIH 252 (599)
Q Consensus 195 LSGGerqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~L~~l~~~g-~tvi~~~H 252 (599)
.++.++++..+++..+.+|+++++.-..+..|..+ ....+.++.+...| .++++.+.
T Consensus 155 ~~~~~~~~~~~~~~~i~~~d~iilvv~~~~~~~~~-~~~~~l~~~~~~~~~~~i~V~nK 212 (360)
T 3t34_A 155 SDSIVKDIENMVRSYIEKPNCIILAISPANQDLAT-SDAIKISREVDPSGDRTFGVLTK 212 (360)
T ss_dssp CSSHHHHHHHHHHHHHHSSSEEEEEEEETTSCGGG-CHHHHHHHHSCTTCTTEEEEEEC
T ss_pred chhHHHHHHHHHHHHhhcCCeEEEEeecccCCcCC-HHHHHHHHHhcccCCCEEEEEeC
Confidence 56788999999999999999877774334445443 45566677776555 56666665
No 184
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=98.01 E-value=1.9e-06 Score=81.32 Aligned_cols=36 Identities=17% Similarity=0.281 Sum_probs=29.6
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEE
Q 007554 81 PGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILL 118 (599)
Q Consensus 81 ~Ge~~aI~G~sGsGKSTLl~~L~G~~~~~~~~~G~I~~ 118 (599)
+|++++|+||||||||||++.|++..++. ..|.|..
T Consensus 4 ~g~~i~i~GpsGsGKSTL~~~L~~~~~~~--~~~~i~~ 39 (180)
T 1kgd_A 4 MRKTLVLLGAHGVGRRHIKNTLITKHPDR--FAYPIPH 39 (180)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHCTTT--EECCCCE
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhCCcc--EEEeeec
Confidence 68999999999999999999999987532 3565544
No 185
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=98.00 E-value=3.7e-05 Score=77.92 Aligned_cols=73 Identities=22% Similarity=0.303 Sum_probs=45.8
Q ss_pred CHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHH----------HHHHHHHHHHHHHh----CCCEEEEEecCCc---hHH
Q 007554 196 SGGERRRVSIALEILMRPRLLFLDEPTSGLDSA----------AAFFVTQTLRCLSR----DGRTVIASIHQPS---SEV 258 (599)
Q Consensus 196 SGGerqRv~ia~aL~~~p~illlDEPtsgLD~~----------~~~~i~~~L~~l~~----~g~tvi~~~H~p~---~~i 258 (599)
+++++.|..++.+...+|.+|++||+.+-++.. ....++..+..... .+..||.++++|. ..+
T Consensus 97 ~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~v~vi~~tn~~~~l~~~l 176 (297)
T 3b9p_A 97 DGEKLVRALFAVARHMQPSIIFIDEVDSLLSERSSSEHEASRRLKTEFLVEFDGLPGNPDGDRIVVLAATNRPQELDEAA 176 (297)
T ss_dssp CHHHHHHHHHHHHHHTCSEEEEEETGGGTSBCC-----CCSHHHHHHHHHHHHHCC------CEEEEEEESCGGGBCHHH
T ss_pred hHHHHHHHHHHHHHHcCCcEEEeccHHHhccccccCcchHHHHHHHHHHHHHhcccccCCCCcEEEEeecCChhhCCHHH
Confidence 456777777888888899999999998766532 22334444444321 2356778888752 344
Q ss_pred HhccCeEEEE
Q 007554 259 FELFDRLYLL 268 (599)
Q Consensus 259 ~~~~D~v~~L 268 (599)
.+.|++.+.+
T Consensus 177 ~~R~~~~i~~ 186 (297)
T 3b9p_A 177 LRRFTKRVYV 186 (297)
T ss_dssp HHHCCEEEEC
T ss_pred HhhCCeEEEe
Confidence 5566665444
No 186
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=97.96 E-value=2.7e-06 Score=91.99 Aligned_cols=70 Identities=14% Similarity=0.211 Sum_probs=50.6
Q ss_pred hCCCEEEEeCCCCCCCH-HHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhccCeEEE-EeCCeEEEecChh
Q 007554 211 MRPRLLFLDEPTSGLDS-AAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYL-LSGGKTVYFGETS 280 (599)
Q Consensus 211 ~~p~illlDEPtsgLD~-~~~~~i~~~L~~l~~~g~tvi~~~H~p~~~i~~~~D~v~~-L~~G~iv~~G~~~ 280 (599)
.+|++|++||+..-.+. .++..+...+..+.+.|+.+|+++|.|..++..+.+++.- +..|.++..++++
T Consensus 193 ~~~~vL~IDEi~~l~~~~~~q~~l~~~l~~l~~~~~~iIitt~~~~~~l~~l~~~L~sR~~~g~~i~l~~p~ 264 (440)
T 2z4s_A 193 KKVDILLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDREPQKLSEFQDRLVSRFQMGLVAKLEPPD 264 (440)
T ss_dssp TTCSEEEEECGGGGSSCHHHHHHHHHHHHHHHTTTCEEEEEESSCGGGCSSCCHHHHHHHHSSBCCBCCCCC
T ss_pred CCCCEEEEeCcccccCChHHHHHHHHHHHHHHHCCCeEEEEECCCHHHHHHHHHHHHhhccCCeEEEeCCCC
Confidence 38999999999887664 6788899999988878899999999875433223333332 4457776666654
No 187
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=97.93 E-value=8.9e-06 Score=83.91 Aligned_cols=132 Identities=11% Similarity=0.136 Sum_probs=83.4
Q ss_pred cceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCcCeEEEEcCCCCCCCCCCHHHH
Q 007554 69 HNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLSFGTAAYVTQDDNLIGTLTVRET 148 (599)
Q Consensus 69 ~~iL~~vs~~i~~Ge~~aI~G~sGsGKSTLl~~L~G~~~~~~~~~G~I~~~g~~~~~~~~~~~yv~Q~~~l~~~lTV~e~ 148 (599)
..-|+++.+-+++|+++.|.|++|+|||||+..++..... .| ..+.|+.-+ ++..+.
T Consensus 55 ~~~LD~~lgGl~~G~l~li~G~pG~GKTtl~l~ia~~~a~----~g-------------~~vl~~slE------~s~~~l 111 (315)
T 3bh0_A 55 FTELDRMTYGYKRRNFVLIAARPSMGKTAFALKQAKNMSD----ND-------------DVVNLHSLE------MGKKEN 111 (315)
T ss_dssp CHHHHHHHSSBCTTCEEEEECCTTSSHHHHHHHHHHHHHT----TT-------------CEEEEEESS------SCHHHH
T ss_pred hHHHHhhcCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHH----cC-------------CeEEEEECC------CCHHHH
Confidence 4457777777999999999999999999999888743211 11 234555432 344333
Q ss_pred HHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHH
Q 007554 149 ISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSA 228 (599)
Q Consensus 149 l~~~~~~~~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSGGerqRv~ia~aL~~~p~illlDEPtsgLD~~ 228 (599)
.. +.......+.+.+..+ | . ..||++|++|+..|...+.++++++.|+|...
T Consensus 112 ~~------------------R~~~~~~~i~~~~l~~---~--~-~~l~~~~~~~l~~a~~~l~~~~i~i~d~~~~~---- 163 (315)
T 3bh0_A 112 IK------------------RLIVTAGSINAQKIKA---A--R-RDFASEDWGKLSMAIGEISNSNINIFDKAGQS---- 163 (315)
T ss_dssp HH------------------HHHHHHTTCCHHHHHS---C--H-HHHCSSCHHHHHHHHHHHHTSCEEEECCSCCB----
T ss_pred HH------------------HHHHHHcCCCHHHHhc---C--C-CCCCHHHHHHHHHHHHHHhCCCEEEECCCCCC----
Confidence 21 1111111111111111 0 0 12899999999999999999999999998643
Q ss_pred HHHHHHHHHHHHHhC-CCE--EEEEec
Q 007554 229 AAFFVTQTLRCLSRD-GRT--VIASIH 252 (599)
Q Consensus 229 ~~~~i~~~L~~l~~~-g~t--vi~~~H 252 (599)
..++...++++.++ |.. +|++-|
T Consensus 164 -~~~i~~~i~~l~~~~~~~~~lVVID~ 189 (315)
T 3bh0_A 164 -VNYIWSKTRQTKRKNPGKRVIVMIDY 189 (315)
T ss_dssp -HHHHHHHHHHHHHTSSSCCEEEEEEC
T ss_pred -HHHHHHHHHHHHHhcCCCCeEEEEeC
Confidence 34566667777653 666 777754
No 188
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=97.89 E-value=2.9e-06 Score=83.33 Aligned_cols=38 Identities=24% Similarity=0.239 Sum_probs=32.9
Q ss_pred EEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEe
Q 007554 78 YAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHK 122 (599)
Q Consensus 78 ~i~~Ge~~aI~G~sGsGKSTLl~~L~G~~~~~~~~~G~I~~~g~~ 122 (599)
..++|++++|.|+||||||||+++|+|. .|+|.+++++
T Consensus 16 ~~~~g~~i~i~G~~GsGKSTl~~~L~~~-------~g~v~~~~~~ 53 (230)
T 2vp4_A 16 EGTQPFTVLIEGNIGSGKTTYLNHFEKY-------KNDICLLTEP 53 (230)
T ss_dssp TTCCCEEEEEECSTTSCHHHHHHTTGGG-------TTTEEEECCT
T ss_pred CCCCceEEEEECCCCCCHHHHHHHHHhc-------cCCeEEEecC
Confidence 4478999999999999999999999986 3778887765
No 189
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=97.88 E-value=8.3e-05 Score=77.54 Aligned_cols=138 Identities=13% Similarity=0.116 Sum_probs=78.2
Q ss_pred EEEeCCeEEEEECCCCCcHHHHHHHHHcCC-CCCCCceeEEEECCEeCCCCcCeEEEEcCCCCCCCCCCHHHHHHHHhhc
Q 007554 77 GYAEPGTLTALMGPSGSGKSTLLDALSSRL-ASNAFLSGTILLNGHKTKLSFGTAAYVTQDDNLIGTLTVRETISYSARL 155 (599)
Q Consensus 77 ~~i~~Ge~~aI~G~sGsGKSTLl~~L~G~~-~~~~~~~G~I~~~g~~~~~~~~~~~yv~Q~~~l~~~lTV~e~l~~~~~~ 155 (599)
+-+++|+++.|.||+|+|||||+..++... .+.. ..| ....+.|+.-+..+ ...+-.....++
T Consensus 117 GGl~~G~i~~I~G~~GsGKTtla~~la~~~~~~~~-~gg-----------~~~~vlyi~~E~~~----~~~~l~~~~~~~ 180 (343)
T 1v5w_A 117 GGIESMAITEAFGEFRTGKTQLSHTLCVTAQLPGA-GGY-----------PGGKIIFIDTENTF----RPDRLRDIADRF 180 (343)
T ss_dssp SSBCSSEEEEEECCTTCTHHHHHHHHHHHTTSCBT-TTB-----------CCCEEEEEESSSCC----CHHHHHHHHHHT
T ss_pred CCCCCCeEEEEECCCCCCHHHHHHHHHHHHhcccc-cCC-----------CCCeEEEEECCCCC----CHHHHHHHHHHc
Confidence 468999999999999999999999888642 1110 001 01345666554421 232222222222
Q ss_pred cCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHH-HHHHHHHHHHh----hCCCEEEEeCCCCCCCHH--
Q 007554 156 RLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGE-RRRVSIALEIL----MRPRLLFLDEPTSGLDSA-- 228 (599)
Q Consensus 156 ~~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSGGe-rqRv~ia~aL~----~~p~illlDEPtsgLD~~-- 228 (599)
. ... +++++.+.+. +..++.+ .+.+..++.++ .+++++++|+.++-.+..
T Consensus 181 g----~~~-------~~~l~~l~~~------------~~~~~e~~~~ll~~l~~~i~~~~~~~~lvVIDsl~~l~~~~~~ 237 (343)
T 1v5w_A 181 N----VDH-------DAVLDNVLYA------------RAYTSEHQMELLDYVAAKFHEEAGIFKLLIIDSIMALFRVDFS 237 (343)
T ss_dssp T----CCH-------HHHHHTEEEE------------ECCSTTHHHHHHHHHHHHHHHSCSSEEEEEEETSGGGHHHHCC
T ss_pred C----CCH-------HHHHhceeEe------------ecCCHHHHHHHHHHHHHHHHhcCCCccEEEEechHHHHHHHhc
Confidence 1 111 1222222110 1123333 34555566666 568999999999866432
Q ss_pred ----------HHHHHHHHHHHHHh-CCCEEEEEecC
Q 007554 229 ----------AAFFVTQTLRCLSR-DGRTVIASIHQ 253 (599)
Q Consensus 229 ----------~~~~i~~~L~~l~~-~g~tvi~~~H~ 253 (599)
...+++..|+++++ .|.+||++.|-
T Consensus 238 ~~g~~~~r~~~l~~~l~~L~~la~~~~~~Vi~~nq~ 273 (343)
T 1v5w_A 238 GRGELAERQQKLAQMLSRLQKISEEYNVAVFVTNQM 273 (343)
T ss_dssp GGGCHHHHHHHHHHHHHHHHHHHHHHTCEEEEEECC
T ss_pred ccccHHHHHHHHHHHHHHHHHHHHHhCCEEEEEeec
Confidence 13455666677765 48888888875
No 190
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=97.86 E-value=1.1e-05 Score=82.70 Aligned_cols=64 Identities=13% Similarity=0.070 Sum_probs=44.5
Q ss_pred CCHHHHHHHHHHHHHh--hCCCEEEEeCCCCCCCHHH-HHHHHHHHHHHHhC-CC--EEEEEecCCchHHHhccCeEE
Q 007554 195 ISGGERRRVSIALEIL--MRPRLLFLDEPTSGLDSAA-AFFVTQTLRCLSRD-GR--TVIASIHQPSSEVFELFDRLY 266 (599)
Q Consensus 195 LSGGerqRv~ia~aL~--~~p~illlDEPtsgLD~~~-~~~i~~~L~~l~~~-g~--tvi~~~H~p~~~i~~~~D~v~ 266 (599)
+|+|++ .+++.+. ..|.++++ +.+|... ...+.+.+.++++. |. .+.++.|+. ..+..++|.+.
T Consensus 101 ~~~~~~---~i~~~l~~~~~P~ilvl----NK~D~~~~~~~~~~~l~~l~~~~~~~~~i~iSA~~g-~~v~~l~~~i~ 170 (301)
T 1ega_A 101 WTPDDE---MVLNKLREGKAPVILAV----NKVDNVQEKADLLPHLQFLASQMNFLDIVPISAETG-LNVDTIAAIVR 170 (301)
T ss_dssp CCHHHH---HHHHHHHSSSSCEEEEE----ESTTTCCCHHHHHHHHHHHHTTSCCSEEEECCTTTT-TTHHHHHHHHH
T ss_pred CCHHHH---HHHHHHHhcCCCEEEEE----ECcccCccHHHHHHHHHHHHHhcCcCceEEEECCCC-CCHHHHHHHHH
Confidence 898886 4566666 68999998 7889876 66777888888763 43 566666663 44555665543
No 191
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=97.84 E-value=6.7e-05 Score=77.55 Aligned_cols=138 Identities=22% Similarity=0.253 Sum_probs=78.2
Q ss_pred EEEeCCeEEEEECCCCCcHHHHHHHHHcCC-CCCCCceeEEEECCEeCCCCcCeEEEEcCCCCCCCCCCHHHHHHHHhhc
Q 007554 77 GYAEPGTLTALMGPSGSGKSTLLDALSSRL-ASNAFLSGTILLNGHKTKLSFGTAAYVTQDDNLIGTLTVRETISYSARL 155 (599)
Q Consensus 77 ~~i~~Ge~~aI~G~sGsGKSTLl~~L~G~~-~~~~~~~G~I~~~g~~~~~~~~~~~yv~Q~~~l~~~lTV~e~l~~~~~~ 155 (599)
+-+++|+++.|.||+|+|||||+..++... .+. ..| |. ...+.|+.-+..+ ...+-.....++
T Consensus 102 GGl~~G~i~~i~G~~GsGKT~la~~la~~~~~~~--~~g-----g~-----~~~vlyi~~e~~~----~~~~l~~~~~~~ 165 (324)
T 2z43_A 102 GGIETRTMTEFFGEFGSGKTQLCHQLSVNVQLPP--EKG-----GL-----SGKAVYIDTEGTF----RWERIENMAKAL 165 (324)
T ss_dssp TSEETTSEEEEEESTTSSHHHHHHHHHHHTTSCG--GGT-----CC-----SCEEEEEESSSCC----CHHHHHHHHHHT
T ss_pred CCCCCCcEEEEECCCCCCHhHHHHHHHHHHhccc--ccC-----CC-----CCeEEEEECCCCC----CHHHHHHHHHHh
Confidence 568999999999999999999998887542 221 011 10 1345566554322 222222222222
Q ss_pred cCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHH-HHHHHHHHHHHh---hCCCEEEEeCCCCCCCH----
Q 007554 156 RLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGG-ERRRVSIALEIL---MRPRLLFLDEPTSGLDS---- 227 (599)
Q Consensus 156 ~~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSGG-erqRv~ia~aL~---~~p~illlDEPtsgLD~---- 227 (599)
. ... +++++.+ .+. +..++. +.+.+..++.++ .+|+++++|+.++-.+.
T Consensus 166 g----~~~-------~~~~~~l--------~~~----~~~~~~~~~~~l~~l~~~~~~~~~~~lvVIDsl~~l~~~~~~~ 222 (324)
T 2z43_A 166 G----LDI-------DNVMNNI--------YYI----RAINTDHQIAIVDDLQELVSKDPSIKLIVVDSVTSHFRAEYPG 222 (324)
T ss_dssp T----CCH-------HHHHHTE--------EEE----ECCSHHHHHHHHHHHHHHHHHCTTEEEEEETTTTHHHHHHSCT
T ss_pred C----CCH-------HHHhccE--------EEE----eCCCHHHHHHHHHHHHHHHHhccCCCEEEEeCcHHHhhhhhcC
Confidence 1 111 1122211 111 112333 335677778887 57999999999975532
Q ss_pred ----HH----HHHHHHHHHHHHh-CCCEEEEEecC
Q 007554 228 ----AA----AFFVTQTLRCLSR-DGRTVIASIHQ 253 (599)
Q Consensus 228 ----~~----~~~i~~~L~~l~~-~g~tvi~~~H~ 253 (599)
.. ..+++..|+++++ .|.+||++.|-
T Consensus 223 ~g~~~~r~~~~~~~l~~L~~la~~~~~~Vi~~nq~ 257 (324)
T 2z43_A 223 RENLAVRQQKLNKHLHQLTRLAEVYDIAVIITNQV 257 (324)
T ss_dssp TTSHHHHHHHHHHHHHHHHHHHHHHTCEEEEEEEC
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHhCCEEEEEcce
Confidence 11 2455566666665 48898888775
No 192
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=97.83 E-value=8.3e-06 Score=78.75 Aligned_cols=29 Identities=41% Similarity=0.593 Sum_probs=27.0
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHHcCCCC
Q 007554 80 EPGTLTALMGPSGSGKSTLLDALSSRLAS 108 (599)
Q Consensus 80 ~~Ge~~aI~G~sGsGKSTLl~~L~G~~~~ 108 (599)
++|++++|+||||||||||++.|++.+++
T Consensus 6 ~~g~~i~l~GpsGsGKsTl~~~L~~~~~~ 34 (208)
T 3tau_A 6 ERGLLIVLSGPSGVGKGTVREAVFKDPET 34 (208)
T ss_dssp CCCCEEEEECCTTSCHHHHHHHHHHSTTC
T ss_pred CCCcEEEEECcCCCCHHHHHHHHHhhCCC
Confidence 58999999999999999999999998765
No 193
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=97.82 E-value=2.1e-06 Score=85.75 Aligned_cols=54 Identities=24% Similarity=0.252 Sum_probs=41.4
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHH---cCCCCCCCceeEEE--------ECCEeCCCC------cCeEEEEcCC
Q 007554 80 EPGTLTALMGPSGSGKSTLLDALS---SRLASNAFLSGTIL--------LNGHKTKLS------FGTAAYVTQD 136 (599)
Q Consensus 80 ~~Ge~~aI~G~sGsGKSTLl~~L~---G~~~~~~~~~G~I~--------~~g~~~~~~------~~~~~yv~Q~ 136 (599)
++|++++|+|||||||||++++|+ |+..++ +|.|. .+|.+.... .+.+++++|+
T Consensus 25 ~~g~~I~I~G~~GsGKSTl~k~La~~Lg~~~~d---~g~i~r~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 95 (252)
T 4e22_A 25 AIAPVITVDGPSGAGKGTLCKALAESLNWRLLD---SGAIYRVLALAALHHQVDISTEEALVPLAAHLDVRFVS 95 (252)
T ss_dssp TTSCEEEEECCTTSSHHHHHHHHHHHTTCEEEE---HHHHHHHHHHHHHHTTCCSSSSTTHHHHHHTCCEEEEE
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHhcCCCcCC---CCceehHhHHHHHHcCCCcccHHHHHHHHHcCCEEEec
Confidence 789999999999999999999999 877664 88888 777654211 1345666654
No 194
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=97.75 E-value=1.4e-05 Score=76.68 Aligned_cols=29 Identities=28% Similarity=0.389 Sum_probs=26.5
Q ss_pred EEeCCeEEEEECCCCCcHHHHHHHHHcCC
Q 007554 78 YAEPGTLTALMGPSGSGKSTLLDALSSRL 106 (599)
Q Consensus 78 ~i~~Ge~~aI~G~sGsGKSTLl~~L~G~~ 106 (599)
.+++|++++|+|+||||||||.+.|++.+
T Consensus 17 ~~~~~~~i~i~G~~GsGKSTl~~~L~~~~ 45 (207)
T 2qt1_A 17 RGSKTFIIGISGVTNSGKTTLAKNLQKHL 45 (207)
T ss_dssp CSCCCEEEEEEESTTSSHHHHHHHHHTTS
T ss_pred cCCCCeEEEEECCCCCCHHHHHHHHHHhc
Confidence 46789999999999999999999999865
No 195
>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*
Probab=97.74 E-value=1e-05 Score=91.91 Aligned_cols=44 Identities=32% Similarity=0.351 Sum_probs=32.0
Q ss_pred EEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCE
Q 007554 76 TGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGH 121 (599)
Q Consensus 76 s~~i~~Ge~~aI~G~sGsGKSTLl~~L~G~~~~~~~~~G~I~~~g~ 121 (599)
|+.+++|+.++|+|++|+|||||++.|++...+. ...|+| .+|.
T Consensus 3 s~~~~~~~~i~IiG~~gaGKTTLl~~L~~~~~~~-~~~G~V-~~g~ 46 (665)
T 2dy1_A 3 TEGGAMIRTVALVGHAGSGKTTLTEALLYKTGAK-ERRGRV-EEGT 46 (665)
T ss_dssp ---CCCEEEEEEEESTTSSHHHHHHHHHHHTTSS-SSCCCG-GGTC
T ss_pred CCccCCCcEEEEECCCCChHHHHHHHHHHhcCCC-Ccccee-cCCc
Confidence 3457889999999999999999999999765431 125766 4443
No 196
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=97.73 E-value=4.4e-06 Score=88.32 Aligned_cols=44 Identities=27% Similarity=0.248 Sum_probs=39.0
Q ss_pred cceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEE
Q 007554 69 HNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILL 118 (599)
Q Consensus 69 ~~iL~~vs~~i~~Ge~~aI~G~sGsGKSTLl~~L~G~~~~~~~~~G~I~~ 118 (599)
..+|+++++.+++|++++|+||||||||||+++|+|.. .|++..
T Consensus 156 ~~~l~~~~~~i~~~~~i~l~G~~GsGKSTl~~~l~~~~------~g~~~~ 199 (377)
T 1svm_A 156 YDFLKCMVYNIPKKRYWLFKGPIDSGKTTLAAALLELC------GGKALN 199 (377)
T ss_dssp HHHHHHHHHCCTTCCEEEEECSTTSSHHHHHHHHHHHH------CCEEEC
T ss_pred HHHHHhcccccCCCCEEEEECCCCCCHHHHHHHHHhhc------CCcEEE
Confidence 46899999999999999999999999999999999853 566654
No 197
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=97.71 E-value=5.5e-06 Score=79.51 Aligned_cols=40 Identities=25% Similarity=0.246 Sum_probs=33.0
Q ss_pred EeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCE
Q 007554 79 AEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGH 121 (599)
Q Consensus 79 i~~Ge~~aI~G~sGsGKSTLl~~L~G~~~~~~~~~G~I~~~g~ 121 (599)
.++|++++|+|+||||||||++.|++.+.+. .|+|.+.+.
T Consensus 19 ~~~~~~i~i~G~~GsGKstl~~~l~~~~~~~---~~~v~~~~~ 58 (201)
T 1rz3_A 19 TAGRLVLGIDGLSRSGKTTLANQLSQTLREQ---GISVCVFHM 58 (201)
T ss_dssp CSSSEEEEEEECTTSSHHHHHHHHHHHHHHT---TCCEEEEEG
T ss_pred cCCCeEEEEECCCCCCHHHHHHHHHHHHhhc---CCeEEEecc
Confidence 5689999999999999999999999987653 566666543
No 198
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=97.70 E-value=7e-05 Score=80.41 Aligned_cols=125 Identities=14% Similarity=0.146 Sum_probs=69.2
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCcCeEEEEcCCCCCCCCCCHHHHHHHHhhccCCCC
Q 007554 81 PGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLSFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDK 160 (599)
Q Consensus 81 ~Ge~~aI~G~sGsGKSTLl~~L~G~~~~~~~~~G~I~~~g~~~~~~~~~~~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~ 160 (599)
++.+++++|++||||||++..|++.+... .++|.+ +.-|.. .. ...|.+.
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~~l~~~---G~kVll--------------v~~D~~--r~-~a~eqL~---------- 145 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAYFYKKR---GYKVGL--------------VAADVY--RP-AAYDQLL---------- 145 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHHHHHHT---TCCEEE--------------EEECCS--CH-HHHHHHH----------
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHc---CCeEEE--------------EecCcc--ch-hHHHHHH----------
Confidence 58899999999999999999999887542 344443 222210 00 1112221
Q ss_pred CCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHHHHHHHHHhhCCCEEEEeCCC-CC--CCHHHHHHHHHHH
Q 007554 161 MPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPT-SG--LDSAAAFFVTQTL 237 (599)
Q Consensus 161 ~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSGGerqRv~ia~aL~~~p~illlDEPt-sg--LD~~~~~~i~~~L 237 (599)
..-+..|++-.... .+..--+--+-+++.+...+++++|+|+|- .+ .|+....++.+.+
T Consensus 146 -----------~~~~~~gv~~~~~~-------~~~dp~~i~~~al~~a~~~~~DvvIIDTaGr~~~~~d~~lm~el~~i~ 207 (433)
T 3kl4_A 146 -----------QLGNQIGVQVYGEP-------NNQNPIEIAKKGVDIFVKNKMDIIIVDTAGRHGYGEETKLLEEMKEMY 207 (433)
T ss_dssp -----------HHHHTTTCCEECCT-------TCSCHHHHHHHHHHHTTTTTCSEEEEEECCCSSSCCTTHHHHHHHHHH
T ss_pred -----------HHHHhcCCceeecc-------ccCCHHHHHHHHHHHHHhcCCCEEEEECCCCccccCCHHHHHHHHHHH
Confidence 12222333211100 011111222334555555689999999997 35 7887777777766
Q ss_pred HHHHhCCCEEEEEecC
Q 007554 238 RCLSRDGRTVIASIHQ 253 (599)
Q Consensus 238 ~~l~~~g~tvi~~~H~ 253 (599)
+.+......+++..|.
T Consensus 208 ~~~~pd~vlLVlDa~~ 223 (433)
T 3kl4_A 208 DVLKPDDVILVIDASI 223 (433)
T ss_dssp HHHCCSEEEEEEEGGG
T ss_pred HhhCCcceEEEEeCcc
Confidence 5554344445555554
No 199
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=97.69 E-value=1.1e-05 Score=75.17 Aligned_cols=35 Identities=34% Similarity=0.559 Sum_probs=29.1
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCE
Q 007554 80 EPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGH 121 (599)
Q Consensus 80 ~~Ge~~aI~G~sGsGKSTLl~~L~G~~~~~~~~~G~I~~~g~ 121 (599)
.+|++++|+|+|||||||+++.|++.+ |.+.+++.
T Consensus 6 ~~g~~i~l~G~~GsGKSTl~~~l~~~~-------g~~~i~~d 40 (175)
T 1knq_A 6 HDHHIYVLMGVSGSGKSAVASEVAHQL-------HAAFLDGD 40 (175)
T ss_dssp TTSEEEEEECSTTSCHHHHHHHHHHHH-------TCEEEEGG
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHhh-------CcEEEeCc
Confidence 468999999999999999999999863 55666553
No 200
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=97.66 E-value=4.3e-06 Score=86.48 Aligned_cols=41 Identities=22% Similarity=0.194 Sum_probs=35.0
Q ss_pred ccceeeceEEEEeCCe------EEEEECCCCCcHHHHHHHHHcCCCC
Q 007554 68 THNVLEGLTGYAEPGT------LTALMGPSGSGKSTLLDALSSRLAS 108 (599)
Q Consensus 68 ~~~iL~~vs~~i~~Ge------~~aI~G~sGsGKSTLl~~L~G~~~~ 108 (599)
.+..|++++..+..++ ++||+||||||||||+++|++++..
T Consensus 72 ~~~~l~~~~~~~l~~~~~~~p~iigI~GpsGSGKSTl~~~L~~ll~~ 118 (321)
T 3tqc_A 72 ARQTLQQATYQFLGKPEPKVPYIIGIAGSVAVGKSTTSRVLKALLSR 118 (321)
T ss_dssp HHHHHHHHHHHHHTCCCCCCCEEEEEECCTTSSHHHHHHHHHHHHTT
T ss_pred chHHHHHHHHHHhccCCCCCCEEEEEECCCCCCHHHHHHHHHHHhcc
Confidence 3567888888877776 9999999999999999999998763
No 201
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=97.60 E-value=1.6e-05 Score=78.10 Aligned_cols=67 Identities=16% Similarity=0.074 Sum_probs=41.2
Q ss_pred CHHHHHHHHHHHHHhhCCCEEEEeCCCC-CCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhccCe
Q 007554 196 SGGERRRVSIALEILMRPRLLFLDEPTS-GLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDR 264 (599)
Q Consensus 196 SGGerqRv~ia~aL~~~p~illlDEPts-gLD~~~~~~i~~~L~~l~~~g~tvi~~~H~p~~~i~~~~D~ 264 (599)
+.|.-.+.. ...+.+-+++++||.-. ++|.......++.+.....+-++++++.--+.+...++++.
T Consensus 162 Tpg~l~~~l--~~~l~~~~~lVlDEah~~~~~~~~~~~~l~~i~~~~~~~~~il~SAT~~~~~~~~~~~~ 229 (235)
T 3llm_A 162 TVGVLLRKL--EAGIRGISHVIVDEIHERDINTDFLLVVLRDVVQAYPEVRIVLMSATIDTSMFCEYFFN 229 (235)
T ss_dssp EHHHHHHHH--HHCCTTCCEEEECCTTSCCHHHHHHHHHHHHHHHHCTTSEEEEEECSSCCHHHHHHTTS
T ss_pred CHHHHHHHH--HhhhcCCcEEEEECCccCCcchHHHHHHHHHHHhhCCCCeEEEEecCCCHHHHHHHcCC
Confidence 446555543 33578999999999976 68777665555555444333346666655444555555543
No 202
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=97.60 E-value=1.2e-05 Score=89.13 Aligned_cols=42 Identities=38% Similarity=0.523 Sum_probs=35.4
Q ss_pred EEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCcee-EEE-ECCEe
Q 007554 78 YAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSG-TIL-LNGHK 122 (599)
Q Consensus 78 ~i~~Ge~~aI~G~sGsGKSTLl~~L~G~~~~~~~~~G-~I~-~~g~~ 122 (599)
.+++|++++|+|+||||||||+++|+|++.+. +| +|. ++|..
T Consensus 365 ~~~~G~iI~LiG~sGSGKSTLar~La~~L~~~---~G~~i~~lDgD~ 408 (552)
T 3cr8_A 365 RERQGFTVFFTGLSGAGKSTLARALAARLMEM---GGRCVTLLDGDI 408 (552)
T ss_dssp GGGSCEEEEEEESSCHHHHHHHHHHHHHHHTT---CSSCEEEESSHH
T ss_pred ccccceEEEEECCCCChHHHHHHHHHHhhccc---CCceEEEECCcH
Confidence 47799999999999999999999999998774 54 674 77653
No 203
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=97.60 E-value=2.3e-05 Score=75.30 Aligned_cols=29 Identities=31% Similarity=0.403 Sum_probs=26.2
Q ss_pred EeCCeEEEEECCCCCcHHHHHHHHHcCCC
Q 007554 79 AEPGTLTALMGPSGSGKSTLLDALSSRLA 107 (599)
Q Consensus 79 i~~Ge~~aI~G~sGsGKSTLl~~L~G~~~ 107 (599)
..+|++++|+||||||||||++.|.+..+
T Consensus 16 ~~~g~~ivl~GPSGaGKsTL~~~L~~~~~ 44 (197)
T 3ney_A 16 FQGRKTLVLIGASGVGRSHIKNALLSQNP 44 (197)
T ss_dssp CCSCCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CCCCCEEEEECcCCCCHHHHHHHHHhhCC
Confidence 35899999999999999999999998764
No 204
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=97.59 E-value=8.1e-05 Score=76.00 Aligned_cols=29 Identities=28% Similarity=0.463 Sum_probs=25.7
Q ss_pred EEeCCeEEEEECCCCCcHHHHHHHHHcCC
Q 007554 78 YAEPGTLTALMGPSGSGKSTLLDALSSRL 106 (599)
Q Consensus 78 ~i~~Ge~~aI~G~sGsGKSTLl~~L~G~~ 106 (599)
.+.++..+.|.||+|+|||||+++|++..
T Consensus 45 ~~~~~~~vLL~Gp~GtGKT~la~ala~~~ 73 (301)
T 3cf0_A 45 GMTPSKGVLFYGPPGCGKTLLAKAIANEC 73 (301)
T ss_dssp CCCCCSEEEEECSSSSSHHHHHHHHHHHT
T ss_pred CCCCCceEEEECCCCcCHHHHHHHHHHHh
Confidence 35678899999999999999999999764
No 205
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=97.58 E-value=2.4e-05 Score=72.56 Aligned_cols=27 Identities=37% Similarity=0.511 Sum_probs=24.3
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHcCCC
Q 007554 81 PGTLTALMGPSGSGKSTLLDALSSRLA 107 (599)
Q Consensus 81 ~Ge~~aI~G~sGsGKSTLl~~L~G~~~ 107 (599)
.|++++|+||||||||||+++|++.+.
T Consensus 3 ~~~~i~l~G~~GsGKSTl~~~La~~l~ 29 (173)
T 1kag_A 3 EKRNIFLVGPMGAGKSTIGRQLAQQLN 29 (173)
T ss_dssp CCCCEEEECCTTSCHHHHHHHHHHHTT
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHhC
Confidence 467899999999999999999998764
No 206
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=97.57 E-value=4.3e-05 Score=69.93 Aligned_cols=31 Identities=35% Similarity=0.527 Sum_probs=26.0
Q ss_pred eeceEEEEeCCeEEEEECCCCCcHHHHHHHHH
Q 007554 72 LEGLTGYAEPGTLTALMGPSGSGKSTLLDALS 103 (599)
Q Consensus 72 L~~vs~~i~~Ge~~aI~G~sGsGKSTLl~~L~ 103 (599)
+++.++++.+| +++|+|||||||||++++|.
T Consensus 14 ~~~~~i~f~~g-~~~I~G~NGsGKStil~Ai~ 44 (149)
T 1f2t_A 14 HSDTVVEFKEG-INLIIGQNGSGKSSLLDAIL 44 (149)
T ss_dssp BSSEEEECCSE-EEEEECCTTSSHHHHHHHHH
T ss_pred CcceEEEcCCC-eEEEECCCCCCHHHHHHHHH
Confidence 34556667666 99999999999999999997
No 207
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=97.52 E-value=2e-05 Score=82.28 Aligned_cols=28 Identities=25% Similarity=0.406 Sum_probs=24.7
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHHcCCC
Q 007554 80 EPGTLTALMGPSGSGKSTLLDALSSRLA 107 (599)
Q Consensus 80 ~~Ge~~aI~G~sGsGKSTLl~~L~G~~~ 107 (599)
.++..+.|.||+|+|||||++.+++...
T Consensus 43 ~~~~~vli~G~~G~GKTtl~~~l~~~~~ 70 (386)
T 2qby_A 43 EKPNNIFIYGLTGTGKTAVVKFVLSKLH 70 (386)
T ss_dssp CCCCCEEEEECTTSSHHHHHHHHHHHHH
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHHHHH
Confidence 4578999999999999999999998653
No 208
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=97.47 E-value=0.00053 Score=73.93 Aligned_cols=171 Identities=13% Similarity=0.145 Sum_probs=96.0
Q ss_pred cceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCcCeEEEEcCCCCCCCCCCHHHH
Q 007554 69 HNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLSFGTAAYVTQDDNLIGTLTVRET 148 (599)
Q Consensus 69 ~~iL~~vs~~i~~Ge~~aI~G~sGsGKSTLl~~L~G~~~~~~~~~G~I~~~g~~~~~~~~~~~yv~Q~~~l~~~lTV~e~ 148 (599)
..-|+.+.+-+++|+++.|.|++|+|||||+.-++...... .| ..+.|+.-+ ++..+.
T Consensus 187 ~~~LD~~lgGl~~G~l~ii~G~pg~GKT~lal~ia~~~a~~---~g-------------~~vl~~slE------~~~~~l 244 (444)
T 2q6t_A 187 FKELDQLIGTLGPGSLNIIAARPAMGKTAFALTIAQNAALK---EG-------------VGVGIYSLE------MPAAQL 244 (444)
T ss_dssp CHHHHHHHCCCCTTCEEEEEECTTSCHHHHHHHHHHHHHHT---TC-------------CCEEEEESS------SCHHHH
T ss_pred CHhhhhhcCCcCCCcEEEEEeCCCCCHHHHHHHHHHHHHHh---CC-------------CeEEEEECC------CCHHHH
Confidence 34577777779999999999999999999998887543211 11 123444322 233322
Q ss_pred HHH--HhhccCC------CCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHHHHHHHHHh--hCCCEEEE
Q 007554 149 ISY--SARLRLP------DKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEIL--MRPRLLFL 218 (599)
Q Consensus 149 l~~--~~~~~~~------~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSGGerqRv~ia~aL~--~~p~illl 218 (599)
..- +.....+ ...+..+ ..++.+.+..+.-.+. .+-+ ..++|..+. .+.++.+. .+|+++++
T Consensus 245 ~~R~~~~~~~i~~~~l~~g~l~~~~-~~~~~~a~~~l~~~~l---~i~d--~~~~s~~~l--~~~~~~l~~~~~~~lIvI 316 (444)
T 2q6t_A 245 TLRMMCSEARIDMNRVRLGQLTDRD-FSRLVDVASRLSEAPI---YIDD--TPDLTLMEV--RARARRLVSQNQVGLIII 316 (444)
T ss_dssp HHHHHHHHTTCCTTTCCGGGCCHHH-HHHHHHHHHHHHTSCE---EEEC--CTTCBHHHH--HHHHHHHHHHSCCCEEEE
T ss_pred HHHHHHHHcCCCHHHHhCCCCCHHH-HHHHHHHHHHHhcCCE---EEEC--CCCCCHHHH--HHHHHHHHHHcCCCEEEE
Confidence 211 1111111 0122222 2333333333321111 1111 134676665 34555555 48999999
Q ss_pred eCCCCCCCH----------HHHHHHHHHHHHHHh-CCCEEEEEecCC-----------c-------hHHHhccCeEEEEe
Q 007554 219 DEPTSGLDS----------AAAFFVTQTLRCLSR-DGRTVIASIHQP-----------S-------SEVFELFDRLYLLS 269 (599)
Q Consensus 219 DEPtsgLD~----------~~~~~i~~~L~~l~~-~g~tvi~~~H~p-----------~-------~~i~~~~D~v~~L~ 269 (599)
|..+.-.+. .....+.+.|+.+++ .+.+||+++|-. . ..+...+|.|+.|.
T Consensus 317 D~l~~~~~~~~~~~~~~r~~~i~~i~~~Lk~lAke~~v~vi~lsql~r~~e~r~~~~p~l~dlr~Sg~ie~~aD~vi~L~ 396 (444)
T 2q6t_A 317 DYLQLMSGPGSGKSGENRQQEIAAISRGLKALARELGIPIIALSQLSRAVEARPNKRPMLSDLRESGSIEQDADLVMFIY 396 (444)
T ss_dssp ECGGGCBCC-------CHHHHHHHHHHHHHHHHHHHTSCEEEEEECCGGGGSSSSCSCCGGGGGGGCTTGGGCSEEEEEE
T ss_pred cChhhcCCCcCCCCCCCHHHHHHHHHHHHHHHHHHhCCeEEEEecCCcccccCCCCCCChHHhcchhHHHHhCCEEEEEe
Confidence 998764332 122467777888876 488999998832 1 02456788888885
No 209
>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12
Probab=97.42 E-value=5.7e-05 Score=81.19 Aligned_cols=33 Identities=36% Similarity=0.546 Sum_probs=28.8
Q ss_pred EEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCC
Q 007554 77 GYAEPGTLTALMGPSGSGKSTLLDALSSRLASN 109 (599)
Q Consensus 77 ~~i~~Ge~~aI~G~sGsGKSTLl~~L~G~~~~~ 109 (599)
+++.+|++++|+|||||||||||++|+++..+.
T Consensus 21 ~~~~~~~~~~i~G~nG~GKstll~ai~~~~~~~ 53 (430)
T 1w1w_A 21 VGFGESNFTSIIGPNGSGKSNMMDAISFVLGVR 53 (430)
T ss_dssp EECTTCSEEEEECSTTSSHHHHHHHHHHHTTC-
T ss_pred EEecCCCEEEEECCCCCCHHHHHHHHHhhhccc
Confidence 456789999999999999999999999987653
No 210
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=97.40 E-value=0.00013 Score=84.68 Aligned_cols=31 Identities=26% Similarity=0.448 Sum_probs=28.1
Q ss_pred EEeCCeEEEEECCCCCcHHHHHHHHHcCCCC
Q 007554 78 YAEPGTLTALMGPSGSGKSTLLDALSSRLAS 108 (599)
Q Consensus 78 ~i~~Ge~~aI~G~sGsGKSTLl~~L~G~~~~ 108 (599)
.+++|+.++|+||||+|||||+++|+|....
T Consensus 234 ~i~~~~~vLL~Gp~GtGKTtLarala~~l~~ 264 (806)
T 1ypw_A 234 GVKPPRGILLYGPPGTGKTLIARAVANETGA 264 (806)
T ss_dssp CCCCCCEEEECSCTTSSHHHHHHHHHHTTTC
T ss_pred CCCCCCeEEEECcCCCCHHHHHHHHHHHcCC
Confidence 5789999999999999999999999998643
No 211
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=97.30 E-value=0.00026 Score=67.32 Aligned_cols=24 Identities=38% Similarity=0.465 Sum_probs=21.6
Q ss_pred eEEEEECCCCCcHHHHHHHHHcCC
Q 007554 83 TLTALMGPSGSGKSTLLDALSSRL 106 (599)
Q Consensus 83 e~~aI~G~sGsGKSTLl~~L~G~~ 106 (599)
..+.|.||+|+|||||+++|+...
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~~~ 78 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIANEL 78 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHH
Confidence 678999999999999999998754
No 212
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=97.30 E-value=0.0002 Score=73.59 Aligned_cols=46 Identities=13% Similarity=0.083 Sum_probs=35.2
Q ss_pred hhCCCEEEEeCCCC-CCCHHHHHHHHHHHHHHHhCCCEEEEEecCCc
Q 007554 210 LMRPRLLFLDEPTS-GLDSAAAFFVTQTLRCLSRDGRTVIASIHQPS 255 (599)
Q Consensus 210 ~~~p~illlDEPts-gLD~~~~~~i~~~L~~l~~~g~tvi~~~H~p~ 255 (599)
..++++|++||+-. ..|..+...+...+..+.+.|..+|++++.+.
T Consensus 96 ~~~~~vL~iDEi~~l~~~~~~~~~l~~~l~~~~~~~~~iii~~~~~~ 142 (324)
T 1l8q_A 96 YKSVDLLLLDDVQFLSGKERTQIEFFHIFNTLYLLEKQIILASDRHP 142 (324)
T ss_dssp HHTCSEEEEECGGGGTTCHHHHHHHHHHHHHHHHTTCEEEEEESSCG
T ss_pred hcCCCEEEEcCcccccCChHHHHHHHHHHHHHHHCCCeEEEEecCCh
Confidence 35799999999865 23447788889999888777777777777653
No 213
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=97.29 E-value=5.5e-05 Score=70.74 Aligned_cols=29 Identities=38% Similarity=0.410 Sum_probs=25.5
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHHcCCCC
Q 007554 80 EPGTLTALMGPSGSGKSTLLDALSSRLAS 108 (599)
Q Consensus 80 ~~Ge~~aI~G~sGsGKSTLl~~L~G~~~~ 108 (599)
++|++++|+|++||||||+.+.|++.+.+
T Consensus 3 ~~g~~i~l~G~~GsGKST~~~~L~~~l~~ 31 (179)
T 2pez_A 3 MRGCTVWLTGLSGAGKTTVSMALEEYLVC 31 (179)
T ss_dssp -CCEEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 47999999999999999999999987643
No 214
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=97.28 E-value=2e-05 Score=82.25 Aligned_cols=50 Identities=22% Similarity=0.365 Sum_probs=40.9
Q ss_pred ccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECC
Q 007554 68 THNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNG 120 (599)
Q Consensus 68 ~~~iL~~vs~~i~~Ge~~aI~G~sGsGKSTLl~~L~G~~~~~~~~~G~I~~~g 120 (599)
.+.+++++++...+|.+++|+|++|+|||||++.|++.+.+. .|+|.+-+
T Consensus 42 ~~~~~~~l~~~~~~~~~i~i~G~~g~GKSTl~~~l~~~~~~~---~~~v~v~~ 91 (341)
T 2p67_A 42 STQLLDAIMPYCGNTLRLGVTGTPGAGKSTFLEAFGMLLIRE---GLKVAVIA 91 (341)
T ss_dssp HHHHHHHHGGGCSCSEEEEEEECTTSCHHHHHHHHHHHHHHT---TCCEEEEE
T ss_pred HHHHHHhCCcccCCCEEEEEEcCCCCCHHHHHHHHHHHHHhc---CCeEEEEe
Confidence 356888999999999999999999999999999999987543 45554433
No 215
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=97.23 E-value=0.00011 Score=72.10 Aligned_cols=37 Identities=30% Similarity=0.502 Sum_probs=27.2
Q ss_pred eeceEEEEe---CCeEEEEECCCCCcHHHHHHHHHcCCCC
Q 007554 72 LEGLTGYAE---PGTLTALMGPSGSGKSTLLDALSSRLAS 108 (599)
Q Consensus 72 L~~vs~~i~---~Ge~~aI~G~sGsGKSTLl~~L~G~~~~ 108 (599)
|.++|+.+. +|.+++|.|++||||||+++.|+..+..
T Consensus 13 ~~~~~~~~~~~~~g~~i~i~G~~GsGKsT~~~~l~~~l~~ 52 (229)
T 4eaq_A 13 LGTENLYFQSNAMSAFITFEGPEGSGKTTVINEVYHRLVK 52 (229)
T ss_dssp -------CCCCCCCEEEEEECCTTSCHHHHHHHHHHHHTT
T ss_pred ccCCCeeEeecCCCeEEEEEcCCCCCHHHHHHHHHHHHhc
Confidence 667777776 8999999999999999999999987653
No 216
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=97.23 E-value=0.00018 Score=69.16 Aligned_cols=32 Identities=34% Similarity=0.500 Sum_probs=26.3
Q ss_pred eeceEEEEeCCeEEEEECCCCCcHHHHHHHHHc
Q 007554 72 LEGLTGYAEPGTLTALMGPSGSGKSTLLDALSS 104 (599)
Q Consensus 72 L~~vs~~i~~Ge~~aI~G~sGsGKSTLl~~L~G 104 (599)
+++.++.+.+| +++|+|||||||||++++|.-
T Consensus 14 ~~~~~i~f~~~-~~~I~G~NgsGKStil~ai~~ 45 (203)
T 3qks_A 14 HSDTVVEFKEG-INLIIGQNGSGKSSLLDAILV 45 (203)
T ss_dssp BSSEEEECCSE-EEEEECCTTSSHHHHHHHHHH
T ss_pred ccceEEEeCCC-eEEEEcCCCCCHHHHHHHHHH
Confidence 34556677765 999999999999999999863
No 217
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=97.23 E-value=0.0028 Score=61.92 Aligned_cols=43 Identities=12% Similarity=0.140 Sum_probs=29.3
Q ss_pred hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh--CCCEEEEEecC
Q 007554 211 MRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSR--DGRTVIASIHQ 253 (599)
Q Consensus 211 ~~p~illlDEPtsgLD~~~~~~i~~~L~~l~~--~g~tvi~~~H~ 253 (599)
.+|+++++..+.+.++......+...++.+.. ...++|+.+|-
T Consensus 111 ~~~~~~l~v~d~~~~~~~~~~~l~~~~~~~~~~~~~~~iiv~nK~ 155 (239)
T 3lxx_A 111 PGPHALLLVVPLGRYTEEEHKATEKILKMFGERARSFMILIFTRK 155 (239)
T ss_dssp TCCSEEEEEEETTCCSSHHHHHHHHHHHHHHHHHGGGEEEEEECG
T ss_pred CCCcEEEEEeeCCCCCHHHHHHHHHHHHHhhhhccceEEEEEeCC
Confidence 47899999999888888665555554443322 13588888884
No 218
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=97.20 E-value=3.4e-05 Score=81.07 Aligned_cols=52 Identities=19% Similarity=0.400 Sum_probs=44.2
Q ss_pred eEEEEeEEEEEEccCCcccceee--------------ceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCC
Q 007554 51 RLTWKDLTVMVTLSNGETHNVLE--------------GLTGYAEPGTLTALMGPSGSGKSTLLDALSSRL 106 (599)
Q Consensus 51 ~l~~~~ls~~~~~~~~~~~~iL~--------------~vs~~i~~Ge~~aI~G~sGsGKSTLl~~L~G~~ 106 (599)
.+.|+|++..++ ..+..|+ |+++.+.+|+.++|+||+|+|||||++.|++..
T Consensus 133 ri~Fe~ltp~yP----~er~~Le~~~~~~~~tGiraID~~~pi~rGQr~~IvG~sG~GKTtLl~~Iar~i 198 (422)
T 3ice_A 133 KILFENLTPLHA----NSRLRMERGNGSTEDLTARVLDLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSI 198 (422)
T ss_dssp SCCTTTSCEESC----CSBCCCCCTTCCTTHHHHHHHHHHSCCBTTCEEEEECCSSSSHHHHHHHHHHHH
T ss_pred CceeccccccCC----CCccccccCCCCcccccceeeeeeeeecCCcEEEEecCCCCChhHHHHHHHHHH
Confidence 366777777664 3466888 899999999999999999999999999998764
No 219
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=97.18 E-value=0.00065 Score=68.13 Aligned_cols=27 Identities=37% Similarity=0.608 Sum_probs=23.5
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHHcCC
Q 007554 80 EPGTLTALMGPSGSGKSTLLDALSSRL 106 (599)
Q Consensus 80 ~~Ge~~aI~G~sGsGKSTLl~~L~G~~ 106 (599)
.++.-+.|.||+|+|||||++.++...
T Consensus 49 ~~~~~~ll~G~~GtGKT~la~~la~~~ 75 (285)
T 3h4m_A 49 EPPKGILLYGPPGTGKTLLAKAVATET 75 (285)
T ss_dssp CCCSEEEEESSSSSSHHHHHHHHHHHT
T ss_pred CCCCeEEEECCCCCcHHHHHHHHHHHh
Confidence 456679999999999999999998764
No 220
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=97.14 E-value=0.0036 Score=65.51 Aligned_cols=35 Identities=29% Similarity=0.371 Sum_probs=28.2
Q ss_pred eeeceE--EEEeCCeEEEEECCCCCcHHHHHHHHHcC
Q 007554 71 VLEGLT--GYAEPGTLTALMGPSGSGKSTLLDALSSR 105 (599)
Q Consensus 71 iL~~vs--~~i~~Ge~~aI~G~sGsGKSTLl~~L~G~ 105 (599)
-|+.+- +=+++|+++.|.|++|+|||||...++..
T Consensus 50 ~LD~~Lg~GGl~~G~ii~I~G~pGsGKTtLal~la~~ 86 (356)
T 1u94_A 50 SLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAA 86 (356)
T ss_dssp HHHHHTSSSSEETTSEEEEECSTTSSHHHHHHHHHHH
T ss_pred HHHHHhccCCccCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 455543 35889999999999999999999877743
No 221
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=97.13 E-value=9.6e-05 Score=77.29 Aligned_cols=39 Identities=23% Similarity=0.356 Sum_probs=31.3
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCE
Q 007554 80 EPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGH 121 (599)
Q Consensus 80 ~~Ge~~aI~G~sGsGKSTLl~~L~G~~~~~~~~~G~I~~~g~ 121 (599)
+++.+++|+|++|||||||+|.|+|...+. .|+|.+.+.
T Consensus 72 ~~~~~v~lvG~pgaGKSTLln~L~~~~~~~---~~~v~V~~~ 110 (349)
T 2www_A 72 PLAFRVGLSGPPGAGKSTFIEYFGKMLTER---GHKLSVLAV 110 (349)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHHHHHT---TCCEEEEEC
T ss_pred cCceEEEEEcCCCCCHHHHHHHHHHHhhhc---CCeEEEEee
Confidence 457899999999999999999999977553 566655443
No 222
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=97.13 E-value=0.00052 Score=63.51 Aligned_cols=27 Identities=37% Similarity=0.572 Sum_probs=23.4
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHHcCC
Q 007554 80 EPGTLTALMGPSGSGKSTLLDALSSRL 106 (599)
Q Consensus 80 ~~Ge~~aI~G~sGsGKSTLl~~L~G~~ 106 (599)
++|..++|+|++|+|||||++.|+|..
T Consensus 2 ~~~~ki~ivG~~g~GKStLl~~l~~~~ 28 (172)
T 2gj8_A 2 SHGMKVVIAGRPNAGKSSLLNALAGRE 28 (172)
T ss_dssp --CEEEEEEESTTSSHHHHHHHHHTSC
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 467889999999999999999999864
No 223
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=97.08 E-value=8.3e-05 Score=82.43 Aligned_cols=48 Identities=29% Similarity=0.445 Sum_probs=39.8
Q ss_pred cceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECC
Q 007554 69 HNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNG 120 (599)
Q Consensus 69 ~~iL~~vs~~i~~Ge~~aI~G~sGsGKSTLl~~L~G~~~~~~~~~G~I~~~g 120 (599)
..+++++++.+ +|+.++|+||||+|||||+++|++...+. .|+|.++|
T Consensus 96 ~~~l~~~~~~~-~g~~vll~Gp~GtGKTtlar~ia~~l~~~---~~~i~~~~ 143 (543)
T 3m6a_A 96 YLAVQKLTKSL-KGPILCLAGPPGVGKTSLAKSIAKSLGRK---FVRISLGG 143 (543)
T ss_dssp HHHHHHHSSSC-CSCEEEEESSSSSSHHHHHHHHHHHHTCE---EEEECCCC
T ss_pred HHHHHHhcccC-CCCEEEEECCCCCCHHHHHHHHHHhcCCC---eEEEEecc
Confidence 34677788777 89999999999999999999999988653 67776555
No 224
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=97.06 E-value=0.00026 Score=68.45 Aligned_cols=37 Identities=35% Similarity=0.520 Sum_probs=28.1
Q ss_pred CeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEE
Q 007554 82 GTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILL 118 (599)
Q Consensus 82 Ge~~aI~G~sGsGKSTLl~~L~G~~~~~~~~~G~I~~ 118 (599)
+.+++|+|||||||||+.++|++.+......+|++..
T Consensus 5 ~~~i~i~G~~GsGKSTl~~~L~~~~g~~~~d~g~i~~ 41 (227)
T 1cke_A 5 APVITIDGPSGAGKGTLCKAMAEALQWHLLDSGAIYR 41 (227)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHHHHTCEEEEHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCCcccCcceee
Confidence 5689999999999999999999865321123566654
No 225
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=97.06 E-value=0.00011 Score=70.84 Aligned_cols=40 Identities=35% Similarity=0.406 Sum_probs=32.8
Q ss_pred EeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCcee--EEEECCE
Q 007554 79 AEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSG--TILLNGH 121 (599)
Q Consensus 79 i~~Ge~~aI~G~sGsGKSTLl~~L~G~~~~~~~~~G--~I~~~g~ 121 (599)
+++|.+++|+|++||||||+.+.|++.+.+. .| .+.++|.
T Consensus 22 ~~~~~~i~~~G~~GsGKsT~~~~l~~~l~~~---~g~~~~~~~~d 63 (211)
T 1m7g_A 22 NQRGLTIWLTGLSASGKSTLAVELEHQLVRD---RRVHAYRLDGD 63 (211)
T ss_dssp TSSCEEEEEECSTTSSHHHHHHHHHHHHHHH---HCCCEEEECHH
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHHhccc---cCCcEEEECCh
Confidence 5689999999999999999999999887642 56 6666643
No 226
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=97.04 E-value=0.00096 Score=65.18 Aligned_cols=53 Identities=23% Similarity=0.342 Sum_probs=43.0
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEec---------CCchHHHhccCeEEEEe
Q 007554 212 RPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIH---------QPSSEVFELFDRLYLLS 269 (599)
Q Consensus 212 ~p~illlDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H---------~p~~~i~~~~D~v~~L~ 269 (599)
+++++++||--- |+. .+++.++.+++.|.+||++-| .++..+..++|+|.-|+
T Consensus 89 ~~dvViIDEaQ~-l~~----~~ve~l~~L~~~gi~Vil~Gl~~df~~~~F~~~~~Ll~lAD~V~el~ 150 (223)
T 2b8t_A 89 ETKVIGIDEVQF-FDD----RICEVANILAENGFVVIISGLDKNFKGEPFGPIAKLFTYADKITKLT 150 (223)
T ss_dssp TCCEEEECSGGG-SCT----HHHHHHHHHHHTTCEEEEECCSBCTTSSBCTTHHHHHHHCSEEEECC
T ss_pred CCCEEEEecCcc-CcH----HHHHHHHHHHhCCCeEEEEeccccccCCcCCCcHHHHHHhheEeecc
Confidence 589999999964 654 355666777777999999999 66788899999999975
No 227
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=97.04 E-value=0.00055 Score=73.70 Aligned_cols=40 Identities=25% Similarity=0.465 Sum_probs=31.4
Q ss_pred eEEEEECCCCCcHHHHHHHHHcCCCC---------CCCceeEEEECCEe
Q 007554 83 TLTALMGPSGSGKSTLLDALSSRLAS---------NAFLSGTILLNGHK 122 (599)
Q Consensus 83 e~~aI~G~sGsGKSTLl~~L~G~~~~---------~~~~~G~I~~~g~~ 122 (599)
-.++|+|+||+|||||+|.|+|.... ....+|.+.++|.+
T Consensus 181 ~kvaivG~~gvGKSTLln~l~g~~~~~v~~~~gtT~d~~~~~i~~~g~~ 229 (439)
T 1mky_A 181 IKVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFIDGRK 229 (439)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTSTTEEECCCC------CCEEEEETTEE
T ss_pred ceEEEECCCCCCHHHHHHHHhCCcccccCCCCCCcCCceEEEEEECCEE
Confidence 37999999999999999999997531 01247899999975
No 228
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=96.98 E-value=0.00031 Score=67.23 Aligned_cols=28 Identities=32% Similarity=0.445 Sum_probs=25.5
Q ss_pred EeCCeEEEEECCCCCcHHHHHHHHHcCC
Q 007554 79 AEPGTLTALMGPSGSGKSTLLDALSSRL 106 (599)
Q Consensus 79 i~~Ge~~aI~G~sGsGKSTLl~~L~G~~ 106 (599)
..+|.+++|+||||||||||.+.|+..+
T Consensus 9 ~~~~~~i~l~G~sGsGKsTl~~~L~~~~ 36 (204)
T 2qor_A 9 MARIPPLVVCGPSGVGKGTLIKKVLSEF 36 (204)
T ss_dssp CCCCCCEEEECCTTSCHHHHHHHHHHHC
T ss_pred cccCCEEEEECCCCCCHHHHHHHHHHhC
Confidence 4689999999999999999999998765
No 229
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=96.98 E-value=0.00058 Score=65.97 Aligned_cols=44 Identities=11% Similarity=0.069 Sum_probs=30.5
Q ss_pred hCCCEEEEeCCCCCC-CHHHHHHHHHHHHHHHhCCCE-EEEEecCC
Q 007554 211 MRPRLLFLDEPTSGL-DSAAAFFVTQTLRCLSRDGRT-VIASIHQP 254 (599)
Q Consensus 211 ~~p~illlDEPtsgL-D~~~~~~i~~~L~~l~~~g~t-vi~~~H~p 254 (599)
.+|.++++||.-.-- +......+.+.+....+.+.. +|++++.+
T Consensus 103 ~~~~vliiDe~~~~~~~~~~~~~l~~~l~~~~~~~~~~ii~~~~~~ 148 (242)
T 3bos_A 103 EQFDLICIDDVDAVAGHPLWEEAIFDLYNRVAEQKRGSLIVSASAS 148 (242)
T ss_dssp GGSSEEEEETGGGGTTCHHHHHHHHHHHHHHHHHCSCEEEEEESSC
T ss_pred cCCCEEEEeccccccCCHHHHHHHHHHHHHHHHcCCCeEEEEcCCC
Confidence 468999999965432 233377788888887665654 77777754
No 230
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=96.98 E-value=0.0032 Score=65.69 Aligned_cols=27 Identities=30% Similarity=0.523 Sum_probs=23.1
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHHcCC
Q 007554 80 EPGTLTALMGPSGSGKSTLLDALSSRL 106 (599)
Q Consensus 80 ~~Ge~~aI~G~sGsGKSTLl~~L~G~~ 106 (599)
.+..-+.|.||+|+|||||+++|+...
T Consensus 115 ~~~~~vLl~GppGtGKT~la~aia~~~ 141 (357)
T 3d8b_A 115 GPPKGILLFGPPGTGKTLIGKCIASQS 141 (357)
T ss_dssp SCCSEEEEESSTTSSHHHHHHHHHHHT
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHc
Confidence 355679999999999999999998654
No 231
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=96.96 E-value=0.00055 Score=64.42 Aligned_cols=35 Identities=31% Similarity=0.493 Sum_probs=20.9
Q ss_pred ceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcC
Q 007554 70 NVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSR 105 (599)
Q Consensus 70 ~iL~~vs~~i~~Ge~~aI~G~sGsGKSTLl~~L~G~ 105 (599)
.+++++++..++. .++|+|++|+|||||++.+.+.
T Consensus 12 ~~l~~~~~~~~~~-ki~~vG~~~vGKSsli~~l~~~ 46 (190)
T 1m2o_B 12 DVLASLGLWNKHG-KLLFLGLDNAGKTTLLHMLKND 46 (190)
T ss_dssp ------------C-EEEEEESTTSSHHHHHHHHHHS
T ss_pred HHHHHhhccCCcc-EEEEECCCCCCHHHHHHHHhcC
Confidence 4788999988877 6799999999999999999974
No 232
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=96.95 E-value=0.0035 Score=64.28 Aligned_cols=34 Identities=26% Similarity=0.414 Sum_probs=28.0
Q ss_pred eeeceE-EEEeCCeEEEEECCCCCcHHHHHHHHHc
Q 007554 71 VLEGLT-GYAEPGTLTALMGPSGSGKSTLLDALSS 104 (599)
Q Consensus 71 iL~~vs-~~i~~Ge~~aI~G~sGsGKSTLl~~L~G 104 (599)
-|+.+- +-+++|+++.|.||+|+|||||...++.
T Consensus 86 ~LD~~l~GGl~~g~i~~i~G~~gsGKT~la~~la~ 120 (322)
T 2i1q_A 86 ELDSVLGGGLESQSVTEFAGVFGSGKTQIMHQSCV 120 (322)
T ss_dssp HHHHHTTSSEETTEEEEEEESTTSSHHHHHHHHHH
T ss_pred hHHHhcCCCccCCeEEEEECCCCCCHHHHHHHHHH
Confidence 344443 5689999999999999999999988774
No 233
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=96.94 E-value=0.00035 Score=65.63 Aligned_cols=39 Identities=36% Similarity=0.447 Sum_probs=28.9
Q ss_pred eEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCE
Q 007554 83 TLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGH 121 (599)
Q Consensus 83 e~~aI~G~sGsGKSTLl~~L~G~~~~~~~~~G~I~~~g~ 121 (599)
.+++|+|+||||||||++.|.+.+......-|.|..++.
T Consensus 7 ~~i~i~G~sGsGKTTl~~~l~~~l~~~g~~v~~i~~~~~ 45 (174)
T 1np6_A 7 PLLAFAAWSGTGKTTLLKKLIPALCARGIRPGLIKHTHH 45 (174)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEECCC
T ss_pred eEEEEEeCCCCCHHHHHHHHHHhccccCCceeEEeeCCC
Confidence 589999999999999999999875432122466666543
No 234
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=96.92 E-value=0.0011 Score=71.55 Aligned_cols=35 Identities=11% Similarity=0.088 Sum_probs=29.3
Q ss_pred ceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHc
Q 007554 70 NVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSS 104 (599)
Q Consensus 70 ~iL~~vs~~i~~Ge~~aI~G~sGsGKSTLl~~L~G 104 (599)
.-|+.+.+=+.+|+++.|.|++|+|||||+--++.
T Consensus 185 ~~LD~~lgGl~~G~liiIaG~pG~GKTtlal~ia~ 219 (444)
T 3bgw_A 185 TELDRMTYGYKRRNFVLIAARPSMGKTAFALKQAK 219 (444)
T ss_dssp HHHHHHHSSBCSSCEEEEEECSSSSHHHHHHHHHH
T ss_pred HHHHhhcCCCCCCcEEEEEeCCCCChHHHHHHHHH
Confidence 34666666689999999999999999999877764
No 235
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=96.92 E-value=0.00038 Score=65.49 Aligned_cols=32 Identities=16% Similarity=0.297 Sum_probs=26.1
Q ss_pred ceEEEEeCCeEEEEECCCCCcHHHHHHHHHcC
Q 007554 74 GLTGYAEPGTLTALMGPSGSGKSTLLDALSSR 105 (599)
Q Consensus 74 ~vs~~i~~Ge~~aI~G~sGsGKSTLl~~L~G~ 105 (599)
++|+...+|..++|+|++||||||+.+.|+..
T Consensus 2 ~~~~~~~~~~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 2 PGSMEQPKGINILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp ----CCCSSCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CcCcCCCCCCEEEEECCCCCCHHHHHHHHHHh
Confidence 56778888999999999999999999999864
No 236
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Probab=96.91 E-value=0.00073 Score=71.05 Aligned_cols=32 Identities=31% Similarity=0.446 Sum_probs=28.0
Q ss_pred eeeceEEEEeCCeEEEEECCCCCcHHHHHHHHH
Q 007554 71 VLEGLTGYAEPGTLTALMGPSGSGKSTLLDALS 103 (599)
Q Consensus 71 iL~~vs~~i~~Ge~~aI~G~sGsGKSTLl~~L~ 103 (599)
.+++..+++.+| +++|.|||||||||+|.+|.
T Consensus 15 ~~~~~~i~f~~g-l~vi~G~NGaGKT~ileAI~ 46 (371)
T 3auy_A 15 SHVNSRIKFEKG-IVAIIGENGSGKSSIFEAVF 46 (371)
T ss_dssp TEEEEEEECCSE-EEEEEECTTSSHHHHHHHHH
T ss_pred cccceEEecCCC-eEEEECCCCCCHHHHHHHHH
Confidence 346778888876 99999999999999999986
No 237
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=96.86 E-value=0.0094 Score=61.26 Aligned_cols=27 Identities=37% Similarity=0.554 Sum_probs=23.3
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHHcCC
Q 007554 80 EPGTLTALMGPSGSGKSTLLDALSSRL 106 (599)
Q Consensus 80 ~~Ge~~aI~G~sGsGKSTLl~~L~G~~ 106 (599)
.|..-+.|.||+|+|||||.+.++...
T Consensus 43 ~~~~~iLL~GppGtGKT~la~ala~~~ 69 (322)
T 1xwi_A 43 TPWRGILLFGPPGTGKSYLAKAVATEA 69 (322)
T ss_dssp CCCSEEEEESSSSSCHHHHHHHHHHHT
T ss_pred CCCceEEEECCCCccHHHHHHHHHHHc
Confidence 455678999999999999999999754
No 238
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=96.85 E-value=0.00022 Score=67.69 Aligned_cols=37 Identities=32% Similarity=0.469 Sum_probs=31.5
Q ss_pred ccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcC
Q 007554 68 THNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSR 105 (599)
Q Consensus 68 ~~~iL~~vs~~i~~Ge~~aI~G~sGsGKSTLl~~L~G~ 105 (599)
-+.+++++|+..++++ ++|+|++|+|||||++.+.+.
T Consensus 12 ~~~~l~~~~~~~~~~k-i~lvG~~~vGKSsLi~~l~~~ 48 (198)
T 1f6b_A 12 FSSVLQFLGLYKKTGK-LVFLGLDNAGKTTLLHMLKDD 48 (198)
T ss_dssp -CHHHHHHTCTTCCEE-EEEEEETTSSHHHHHHHHSCC
T ss_pred HHHHHHHhhccCCCcE-EEEECCCCCCHHHHHHHHhcC
Confidence 3568899998888885 689999999999999999863
No 239
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=96.78 E-value=0.0053 Score=60.30 Aligned_cols=26 Identities=31% Similarity=0.502 Sum_probs=22.0
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHcCC
Q 007554 81 PGTLTALMGPSGSGKSTLLDALSSRL 106 (599)
Q Consensus 81 ~Ge~~aI~G~sGsGKSTLl~~L~G~~ 106 (599)
+..-+.|.||+|+|||||.+.++...
T Consensus 38 ~~~~vll~G~~GtGKT~la~~la~~~ 63 (262)
T 2qz4_A 38 VPKGALLLGPPGCGKTLLAKAVATEA 63 (262)
T ss_dssp CCCEEEEESCTTSSHHHHHHHHHHHH
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHh
Confidence 34558899999999999999998754
No 240
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=96.75 E-value=0.00057 Score=64.99 Aligned_cols=21 Identities=33% Similarity=0.461 Sum_probs=20.1
Q ss_pred EEEEECCCCCcHHHHHHHHHc
Q 007554 84 LTALMGPSGSGKSTLLDALSS 104 (599)
Q Consensus 84 ~~aI~G~sGsGKSTLl~~L~G 104 (599)
+++|+|+|||||||+.+.|++
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHH
Confidence 589999999999999999998
No 241
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=96.74 E-value=0.00042 Score=65.03 Aligned_cols=30 Identities=37% Similarity=0.505 Sum_probs=26.5
Q ss_pred EeCCeEEEEECCCCCcHHHHHHHHHcCCCC
Q 007554 79 AEPGTLTALMGPSGSGKSTLLDALSSRLAS 108 (599)
Q Consensus 79 i~~Ge~~aI~G~sGsGKSTLl~~L~G~~~~ 108 (599)
..+|.++.|+|++||||||+.+.|++.+..
T Consensus 10 ~~~~~~i~l~G~~GsGKsT~~~~L~~~l~~ 39 (186)
T 2yvu_A 10 IEKGIVVWLTGLPGSGKTTIATRLADLLQK 39 (186)
T ss_dssp CSCCEEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred cCCCcEEEEEcCCCCCHHHHHHHHHHHHHh
Confidence 347899999999999999999999987654
No 242
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=96.71 E-value=0.00035 Score=74.82 Aligned_cols=45 Identities=24% Similarity=0.138 Sum_probs=37.7
Q ss_pred eceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEe
Q 007554 73 EGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHK 122 (599)
Q Consensus 73 ~~vs~~i~~Ge~~aI~G~sGsGKSTLl~~L~G~~~~~~~~~G~I~~~g~~ 122 (599)
+++++. +|++++++|+|||||||++..|++.+.+. .|+|.+.+.+
T Consensus 91 ~~i~l~--~~~vi~i~G~~GsGKTT~~~~LA~~l~~~---g~~Vllvd~D 135 (425)
T 2ffh_A 91 RLPVLK--DRNLWFLVGLQGSGKTTTAAKLALYYKGK---GRRPLLVAAD 135 (425)
T ss_dssp CCCCCC--SSEEEEEECCTTSSHHHHHHHHHHHHHTT---TCCEEEEECC
T ss_pred ccccCC--CCeEEEEECCCCCCHHHHHHHHHHHHHHc---CCeEEEeecc
Confidence 567777 89999999999999999999999988763 5777776543
No 243
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=96.69 E-value=0.0012 Score=68.75 Aligned_cols=27 Identities=30% Similarity=0.448 Sum_probs=23.5
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHHcCC
Q 007554 80 EPGTLTALMGPSGSGKSTLLDALSSRL 106 (599)
Q Consensus 80 ~~Ge~~aI~G~sGsGKSTLl~~L~G~~ 106 (599)
..+..+.|.||+|+|||||++.++...
T Consensus 42 ~~~~~vll~G~~G~GKT~l~~~~~~~~ 68 (387)
T 2v1u_A 42 EKPSNALLYGLTGTGKTAVARLVLRRL 68 (387)
T ss_dssp CCCCCEEECBCTTSSHHHHHHHHHHHH
T ss_pred CCCCcEEEECCCCCCHHHHHHHHHHHH
Confidence 456689999999999999999998754
No 244
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=96.64 E-value=0.00018 Score=75.60 Aligned_cols=46 Identities=28% Similarity=0.340 Sum_probs=34.1
Q ss_pred eEEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCC
Q 007554 51 RLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLA 107 (599)
Q Consensus 51 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~G~sGsGKSTLl~~L~G~~~ 107 (599)
.+.+.|++..+ ..+.+++++++.| +|+|++|+|||||++.|.|...
T Consensus 17 ~v~~~~l~~~~-----~~k~~~~~~~~~I------~vvG~~g~GKSTLln~L~~~~~ 62 (361)
T 2qag_A 17 YVGFANLPNQV-----HRKSVKKGFEFTL------MVVGESGLGKSTLINSLFLTDL 62 (361)
T ss_dssp ----CCHHHHH-----HTHHHHHCCEECE------EECCCTTSCHHHHHHHHTTCCC
T ss_pred eEEeccchHHh-----CCeeecCCCCEEE------EEEcCCCCCHHHHHHHHhCCCC
Confidence 46667776554 3466889999876 9999999999999999988643
No 245
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=96.57 E-value=0.00055 Score=67.95 Aligned_cols=44 Identities=20% Similarity=0.362 Sum_probs=33.4
Q ss_pred eeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCE
Q 007554 72 LEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGH 121 (599)
Q Consensus 72 L~~vs~~i~~Ge~~aI~G~sGsGKSTLl~~L~G~~~~~~~~~G~I~~~g~ 121 (599)
+++.+ ..+++.++.|+|+|||||||+.+.|+..+.. |.+.+++.
T Consensus 23 ~~~~~-~~~~~~~i~l~G~~GsGKSTla~~L~~~l~~-----~~~~~~~D 66 (253)
T 2p5t_B 23 TRGKK-SSKQPIAILLGGQSGAGKTTIHRIKQKEFQG-----NIVIIDGD 66 (253)
T ss_dssp HTTCC-CCSSCEEEEEESCGGGTTHHHHHHHHHHTTT-----CCEEECGG
T ss_pred HccCC-cccCCeEEEEECCCCCCHHHHHHHHHHhcCC-----CcEEEecH
Confidence 33433 4567889999999999999999999987532 45666664
No 246
>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}
Probab=96.57 E-value=0.00095 Score=70.68 Aligned_cols=42 Identities=17% Similarity=0.293 Sum_probs=32.8
Q ss_pred EEEeCCeEEEEECCCCCcHHHHHHHHHcC-----------CCCCCCceeEEEECCE
Q 007554 77 GYAEPGTLTALMGPSGSGKSTLLDALSSR-----------LASNAFLSGTILLNGH 121 (599)
Q Consensus 77 ~~i~~Ge~~aI~G~sGsGKSTLl~~L~G~-----------~~~~~~~~G~I~~~g~ 121 (599)
+.+..|..++|+|+||+|||||+|.|+|. ..| ..|.+.++|.
T Consensus 17 g~i~~~~kvgIVG~pnvGKSTL~n~Ltg~~~~~~~~p~tTi~p---~~g~v~v~~~ 69 (396)
T 2ohf_A 17 GRFGTSLKIGIVGLPNVGKSTFFNVLTNSQASAENFPFCTIDP---NESRVPVPDE 69 (396)
T ss_dssp CCSSSCCCEEEECCSSSSHHHHHHHHHC-------------CC---SEEEEECCCH
T ss_pred hhccCCCEEEEECCCCCCHHHHHHHHHCCCccccCCCccccCc---eeEEEEECCc
Confidence 34567888999999999999999999997 223 3788887764
No 247
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=96.54 E-value=0.00027 Score=73.62 Aligned_cols=38 Identities=34% Similarity=0.458 Sum_probs=33.7
Q ss_pred ceeeceEEEEeCCeE--EEEECCCCCcHHHHHHHHHcCCC
Q 007554 70 NVLEGLTGYAEPGTL--TALMGPSGSGKSTLLDALSSRLA 107 (599)
Q Consensus 70 ~iL~~vs~~i~~Ge~--~aI~G~sGsGKSTLl~~L~G~~~ 107 (599)
.+++.+++.+++|+. ++|+|++||||||+.++|++.+.
T Consensus 10 ~il~~l~~~i~~g~~~~i~l~G~~G~GKTTl~~~la~~l~ 49 (359)
T 2ga8_A 10 DVLQLLDNRIEDNYRVCVILVGSPGSGKSTIAEELCQIIN 49 (359)
T ss_dssp HHHHHHHHTTTTCSCEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccCCeeEEEEECCCCCcHHHHHHHHHHHhC
Confidence 478888888899988 99999999999999999998653
No 248
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=96.53 E-value=0.0012 Score=61.48 Aligned_cols=26 Identities=31% Similarity=0.617 Sum_probs=22.8
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHHcC
Q 007554 80 EPGTLTALMGPSGSGKSTLLDALSSR 105 (599)
Q Consensus 80 ~~Ge~~aI~G~sGsGKSTLl~~L~G~ 105 (599)
.+|.+++|+|++||||||+.+.|+..
T Consensus 2 ~~g~~I~l~G~~GsGKST~~~~La~~ 27 (186)
T 3cm0_A 2 DVGQAVIFLGPPGAGKGTQASRLAQE 27 (186)
T ss_dssp -CEEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 36889999999999999999999854
No 249
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=96.53 E-value=0.00095 Score=63.47 Aligned_cols=25 Identities=36% Similarity=0.462 Sum_probs=22.5
Q ss_pred CeEEEEECCCCCcHHHHHHHHHcCC
Q 007554 82 GTLTALMGPSGSGKSTLLDALSSRL 106 (599)
Q Consensus 82 Ge~~aI~G~sGsGKSTLl~~L~G~~ 106 (599)
..+++|+|++||||||+.+.|++.+
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~~l 42 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAEAC 42 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 4589999999999999999998764
No 250
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=96.53 E-value=0.0013 Score=60.25 Aligned_cols=23 Identities=39% Similarity=0.554 Sum_probs=21.2
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 007554 84 LTALMGPSGSGKSTLLDALSSRL 106 (599)
Q Consensus 84 ~~aI~G~sGsGKSTLl~~L~G~~ 106 (599)
.++|+|++|+|||||++.++|..
T Consensus 5 ~v~lvG~~gvGKStL~~~l~~~~ 27 (165)
T 2wji_A 5 EIALIGNPNVGKSTIFNALTGEN 27 (165)
T ss_dssp EEEEECSTTSSHHHHHHHHHCCS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58999999999999999999864
No 251
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=96.51 E-value=0.0017 Score=60.29 Aligned_cols=22 Identities=41% Similarity=0.625 Sum_probs=20.6
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q 007554 84 LTALMGPSGSGKSTLLDALSSR 105 (599)
Q Consensus 84 ~~aI~G~sGsGKSTLl~~L~G~ 105 (599)
.++|+|++|+|||||++.|+|.
T Consensus 9 ~i~lvG~~gvGKStL~~~l~~~ 30 (188)
T 2wjg_A 9 EIALIGNPNVGKSTIFNALTGE 30 (188)
T ss_dssp EEEEECSTTSSHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5899999999999999999985
No 252
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=96.45 E-value=0.0016 Score=60.30 Aligned_cols=26 Identities=35% Similarity=0.450 Sum_probs=23.2
Q ss_pred CeEEEEECCCCCcHHHHHHHHHcCCC
Q 007554 82 GTLTALMGPSGSGKSTLLDALSSRLA 107 (599)
Q Consensus 82 Ge~~aI~G~sGsGKSTLl~~L~G~~~ 107 (599)
|.++.|.|++||||||+.+.|+..+.
T Consensus 3 ~~~i~l~G~~GsGKST~a~~La~~l~ 28 (178)
T 1qhx_A 3 TRMIILNGGSSAGKSGIVRCLQSVLP 28 (178)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHSS
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhcC
Confidence 57899999999999999999997653
No 253
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=96.44 E-value=0.00031 Score=71.75 Aligned_cols=45 Identities=22% Similarity=0.183 Sum_probs=35.2
Q ss_pred ec-eEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCE
Q 007554 73 EG-LTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGH 121 (599)
Q Consensus 73 ~~-vs~~i~~Ge~~aI~G~sGsGKSTLl~~L~G~~~~~~~~~G~I~~~g~ 121 (599)
++ +++..+ |++++++|++|+||||++..|++.+.+. .|+|.+.+.
T Consensus 89 ~~~i~~~~~-~~vi~i~G~~G~GKTT~~~~la~~~~~~---g~~v~l~~~ 134 (297)
T 1j8m_F 89 EPKVIPDKI-PYVIMLVGVQGTGKTTTAGKLAYFYKKK---GFKVGLVGA 134 (297)
T ss_dssp CCCCSCSSS-SEEEEEECSSCSSTTHHHHHHHHHHHHT---TCCEEEEEC
T ss_pred ccccccCCC-CeEEEEECCCCCCHHHHHHHHHHHHHHC---CCeEEEEec
Confidence 45 677665 9999999999999999999999987653 455655443
No 254
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=96.42 E-value=0.0015 Score=59.77 Aligned_cols=23 Identities=43% Similarity=0.446 Sum_probs=21.0
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 007554 84 LTALMGPSGSGKSTLLDALSSRL 106 (599)
Q Consensus 84 ~~aI~G~sGsGKSTLl~~L~G~~ 106 (599)
+++|+|++||||||+.+.|+..+
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~~l 25 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSKEL 25 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 68999999999999999998664
No 255
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=96.40 E-value=0.0022 Score=62.65 Aligned_cols=74 Identities=16% Similarity=0.116 Sum_probs=43.3
Q ss_pred HHhhCCCEEEEeCCCCC-CCHHHHHHHHHHHHHHHhCCCEEEEEecCC---------------------chHHHhccCeE
Q 007554 208 EILMRPRLLFLDEPTSG-LDSAAAFFVTQTLRCLSRDGRTVIASIHQP---------------------SSEVFELFDRL 265 (599)
Q Consensus 208 aL~~~p~illlDEPtsg-LD~~~~~~i~~~L~~l~~~g~tvi~~~H~p---------------------~~~i~~~~D~v 265 (599)
++..+|+++++||+-.- .+........+-+..+...|..++.++|-- .+.+++.+|.|
T Consensus 80 ~L~~~pdlvIVDElG~~~~~~~r~~~~~qDV~~~l~sgidVitT~Nlqh~esl~d~v~~itg~~v~e~vpd~~~~~a~~v 159 (228)
T 2r8r_A 80 LLKAAPSLVLVDELAHTNAPGSRHTKRWQDIQELLAAGIDVYTTVNVQHLESLNDQVRGITGVQVRETLPDWVLQEAFDL 159 (228)
T ss_dssp HHHHCCSEEEESCTTCBCCTTCSSSBHHHHHHHHHHTTCEEEEEEEGGGBGGGHHHHHHHHSCCCCSCBCHHHHHTCSEE
T ss_pred HHhcCCCEEEEeCCCCCCcccchhHHHHHHHHHHHcCCCCEEEEccccccccHHHHHHHHcCCCcCCcCccHHHhhCCeE
Confidence 34468999999997642 332222223333333445688899988821 13355667777
Q ss_pred EEEeCCeEEEecChhhHHHHHHH
Q 007554 266 YLLSGGKTVYFGETSAAFEFFAQ 288 (599)
Q Consensus 266 ~~L~~G~iv~~G~~~~~~~~f~~ 288 (599)
.+++ -+|+++.+-+++
T Consensus 160 ~lvD-------~~p~~l~~rl~~ 175 (228)
T 2r8r_A 160 VLID-------LPPRELLERLRD 175 (228)
T ss_dssp EEBC-------CCHHHHHHHHHT
T ss_pred EEec-------CCHHHHHHHHHC
Confidence 6654 356666655544
No 256
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=96.39 E-value=0.00036 Score=72.30 Aligned_cols=41 Identities=24% Similarity=0.552 Sum_probs=35.8
Q ss_pred ccceeeceEEEEeCCeE--EEEECCCCCcHHHHHHHHHcCCCC
Q 007554 68 THNVLEGLTGYAEPGTL--TALMGPSGSGKSTLLDALSSRLAS 108 (599)
Q Consensus 68 ~~~iL~~vs~~i~~Ge~--~aI~G~sGsGKSTLl~~L~G~~~~ 108 (599)
...+++.++..++.|++ +.+.||+|+||||+++++++.+.+
T Consensus 30 ~~~~~~~L~~~i~~g~~~~~ll~Gp~G~GKTtla~~la~~l~~ 72 (340)
T 1sxj_C 30 QNEVITTVRKFVDEGKLPHLLFYGPPGTGKTSTIVALAREIYG 72 (340)
T ss_dssp CHHHHHHHHHHHHTTCCCCEEEECSSSSSHHHHHHHHHHHHHT
T ss_pred cHHHHHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHHcC
Confidence 35578888888999998 999999999999999999987644
No 257
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=96.39 E-value=0.028 Score=61.29 Aligned_cols=35 Identities=20% Similarity=0.091 Sum_probs=28.6
Q ss_pred ceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHc
Q 007554 70 NVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSS 104 (599)
Q Consensus 70 ~iL~~vs~~i~~Ge~~aI~G~sGsGKSTLl~~L~G 104 (599)
.-|+.+.+-+.+|+++.|.|++|+|||||+--++-
T Consensus 230 ~~LD~~lgGl~~G~l~li~G~pG~GKT~lal~~a~ 264 (503)
T 1q57_A 230 TGINDKTLGARGGEVIMVTSGSGMVMSTFVRQQAL 264 (503)
T ss_dssp TTHHHHHCCCCTTCEEEEEESSCHHHHHHHHHHHH
T ss_pred hhhhHhhcccCCCeEEEEeecCCCCchHHHHHHHH
Confidence 34555555689999999999999999999877663
No 258
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=96.32 E-value=0.0013 Score=64.91 Aligned_cols=35 Identities=29% Similarity=0.547 Sum_probs=24.8
Q ss_pred eeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCC
Q 007554 71 VLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLA 107 (599)
Q Consensus 71 iL~~vs~~i~~Ge~~aI~G~sGsGKSTLl~~L~G~~~ 107 (599)
.++++++..++| +.|.||+|+|||||+++|++...
T Consensus 36 ~~~~~~~~~~~~--vll~G~~GtGKT~la~~la~~~~ 70 (257)
T 1lv7_A 36 RFQKLGGKIPKG--VLMVGPPGTGKTLLAKAIAGEAK 70 (257)
T ss_dssp GC-----CCCCE--EEEECCTTSCHHHHHHHHHHHHT
T ss_pred HHHHcCCCCCCe--EEEECcCCCCHHHHHHHHHHHcC
Confidence 345555555555 88999999999999999998653
No 259
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=96.28 E-value=0.002 Score=63.02 Aligned_cols=29 Identities=28% Similarity=0.357 Sum_probs=24.6
Q ss_pred EEeCCeEEEEECCCCCcHHHHHHHHHcCC
Q 007554 78 YAEPGTLTALMGPSGSGKSTLLDALSSRL 106 (599)
Q Consensus 78 ~i~~Ge~~aI~G~sGsGKSTLl~~L~G~~ 106 (599)
.-.+|.+++|+|++||||||+.+.|++.+
T Consensus 12 ~~~~~~~i~i~G~~gsGKst~~~~l~~~l 40 (236)
T 1q3t_A 12 DKMKTIQIAIDGPASSGKSTVAKIIAKDF 40 (236)
T ss_dssp --CCCCEEEEECSSCSSHHHHHHHHHHHH
T ss_pred cccCCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 34678999999999999999999999754
No 260
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=96.27 E-value=0.0018 Score=60.29 Aligned_cols=23 Identities=39% Similarity=0.569 Sum_probs=20.4
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 007554 84 LTALMGPSGSGKSTLLDALSSRL 106 (599)
Q Consensus 84 ~~aI~G~sGsGKSTLl~~L~G~~ 106 (599)
.++|+|++|+|||||++.++|..
T Consensus 4 kv~ivG~~gvGKStLl~~l~~~~ 26 (184)
T 2zej_A 4 KLMIVGNTGSGKTTLLQQLMKTK 26 (184)
T ss_dssp EEEEESCTTSSHHHHHHHHTCC-
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 47999999999999999999863
No 261
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=96.24 E-value=0.0023 Score=59.62 Aligned_cols=25 Identities=20% Similarity=0.306 Sum_probs=22.4
Q ss_pred CeEEEEECCCCCcHHHHHHHHHcCC
Q 007554 82 GTLTALMGPSGSGKSTLLDALSSRL 106 (599)
Q Consensus 82 Ge~~aI~G~sGsGKSTLl~~L~G~~ 106 (599)
|.++.|.|++||||||+.+.|+..+
T Consensus 3 ~~~I~i~G~~GsGKsT~~~~L~~~l 27 (192)
T 1kht_A 3 NKVVVVTGVPGVGSTTSSQLAMDNL 27 (192)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHH
Confidence 6789999999999999999998654
No 262
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=96.21 E-value=0.0023 Score=62.91 Aligned_cols=25 Identities=36% Similarity=0.630 Sum_probs=22.0
Q ss_pred CeEEEEECCCCCcHHHHHHHHHcCC
Q 007554 82 GTLTALMGPSGSGKSTLLDALSSRL 106 (599)
Q Consensus 82 Ge~~aI~G~sGsGKSTLl~~L~G~~ 106 (599)
.-+++|.||+||||||+.+.|+..+
T Consensus 9 ~~~i~i~G~~GsGKsTla~~la~~l 33 (233)
T 3r20_A 9 SLVVAVDGPAGTGKSSVSRGLARAL 33 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 3489999999999999999998654
No 263
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=96.15 E-value=0.0024 Score=59.74 Aligned_cols=27 Identities=33% Similarity=0.508 Sum_probs=23.5
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHHcCC
Q 007554 80 EPGTLTALMGPSGSGKSTLLDALSSRL 106 (599)
Q Consensus 80 ~~Ge~~aI~G~sGsGKSTLl~~L~G~~ 106 (599)
+++.++.|.|++||||||+.+.|+..+
T Consensus 3 ~~~~~I~l~G~~GsGKST~~~~L~~~l 29 (193)
T 2rhm_A 3 QTPALIIVTGHPATGKTTLSQALATGL 29 (193)
T ss_dssp SCCEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHc
Confidence 357899999999999999999998543
No 264
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=96.13 E-value=0.0026 Score=63.12 Aligned_cols=24 Identities=25% Similarity=0.443 Sum_probs=21.5
Q ss_pred eEEEEECCCCCcHHHHHHHHHcCC
Q 007554 83 TLTALMGPSGSGKSTLLDALSSRL 106 (599)
Q Consensus 83 e~~aI~G~sGsGKSTLl~~L~G~~ 106 (599)
.+++|+||||||||||.+.|++.+
T Consensus 2 ~li~I~G~~GSGKSTla~~La~~~ 25 (253)
T 2ze6_A 2 LLHLIYGPTCSGKTDMAIQIAQET 25 (253)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHhcC
Confidence 378999999999999999999764
No 265
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=96.08 E-value=0.0028 Score=60.07 Aligned_cols=23 Identities=48% Similarity=0.702 Sum_probs=19.8
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 007554 84 LTALMGPSGSGKSTLLDALSSRL 106 (599)
Q Consensus 84 ~~aI~G~sGsGKSTLl~~L~G~~ 106 (599)
.+.|+||||||||||++.|....
T Consensus 3 pIVi~GPSG~GK~Tl~~~L~~~~ 25 (186)
T 1ex7_A 3 PIVISGPSGTGKSTLLKKLFAEY 25 (186)
T ss_dssp CEEEECCTTSSHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHhC
Confidence 47899999999999999987543
No 266
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=96.07 E-value=0.003 Score=57.61 Aligned_cols=19 Identities=37% Similarity=0.555 Sum_probs=18.2
Q ss_pred EEEEECCCCCcHHHHHHHH
Q 007554 84 LTALMGPSGSGKSTLLDAL 102 (599)
Q Consensus 84 ~~aI~G~sGsGKSTLl~~L 102 (599)
+++|.|++||||||+.+.|
T Consensus 3 ~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 3 VILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp EEEEECCTTSCHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 6899999999999999999
No 267
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=96.06 E-value=0.037 Score=57.99 Aligned_cols=27 Identities=33% Similarity=0.509 Sum_probs=24.3
Q ss_pred EEeCCeEEEEECCCCCcHHHHHHHHHc
Q 007554 78 YAEPGTLTALMGPSGSGKSTLLDALSS 104 (599)
Q Consensus 78 ~i~~Ge~~aI~G~sGsGKSTLl~~L~G 104 (599)
-+++|+++.|.||+|+|||||...++.
T Consensus 70 Gl~~G~li~I~G~pGsGKTtlal~la~ 96 (366)
T 1xp8_A 70 GIPRGRITEIYGPESGGKTTLALAIVA 96 (366)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHH
T ss_pred CccCCcEEEEEcCCCCChHHHHHHHHH
Confidence 589999999999999999999877763
No 268
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=96.01 E-value=0.017 Score=59.16 Aligned_cols=27 Identities=44% Similarity=0.459 Sum_probs=21.8
Q ss_pred EEEeCCeEEEEECCCCCcHHHHH-HHHHc
Q 007554 77 GYAEPGTLTALMGPSGSGKSTLL-DALSS 104 (599)
Q Consensus 77 ~~i~~Ge~~aI~G~sGsGKSTLl-~~L~G 104 (599)
+=+++| ++.|.||+|+|||||+ .+++.
T Consensus 24 GGl~~G-iteI~G~pGsGKTtL~Lq~~~~ 51 (333)
T 3io5_A 24 GGMQSG-LLILAGPSKSFKSNFGLTMVSS 51 (333)
T ss_dssp CCBCSE-EEEEEESSSSSHHHHHHHHHHH
T ss_pred CCCcCC-eEEEECCCCCCHHHHHHHHHHH
Confidence 447889 9999999999999995 44443
No 269
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=96.01 E-value=0.0035 Score=58.39 Aligned_cols=26 Identities=27% Similarity=0.267 Sum_probs=22.3
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHcCC
Q 007554 81 PGTLTALMGPSGSGKSTLLDALSSRL 106 (599)
Q Consensus 81 ~Ge~~aI~G~sGsGKSTLl~~L~G~~ 106 (599)
++..+.|+|++||||||+.+.|+..+
T Consensus 4 ~~~~i~l~G~~GsGKst~a~~La~~l 29 (185)
T 3trf_A 4 NLTNIYLIGLMGAGKTSVGSQLAKLT 29 (185)
T ss_dssp -CCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHh
Confidence 36789999999999999999998654
No 270
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=96.00 E-value=0.0037 Score=59.05 Aligned_cols=26 Identities=27% Similarity=0.351 Sum_probs=23.8
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHcCC
Q 007554 81 PGTLTALMGPSGSGKSTLLDALSSRL 106 (599)
Q Consensus 81 ~Ge~~aI~G~sGsGKSTLl~~L~G~~ 106 (599)
+|.+++|.|++||||||+.+.|+..+
T Consensus 3 ~~~~I~l~G~~GsGKsT~~~~L~~~l 28 (204)
T 2v54_A 3 RGALIVFEGLDKSGKTTQCMNIMESI 28 (204)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHTS
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 57899999999999999999999765
No 271
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=96.00 E-value=0.0036 Score=60.16 Aligned_cols=24 Identities=42% Similarity=0.538 Sum_probs=21.8
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHc
Q 007554 81 PGTLTALMGPSGSGKSTLLDALSS 104 (599)
Q Consensus 81 ~Ge~~aI~G~sGsGKSTLl~~L~G 104 (599)
.+-+++|.|++||||||+.+.|+.
T Consensus 3 ~~~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 3 LRYIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHH
Confidence 356899999999999999999986
No 272
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=95.99 E-value=0.009 Score=56.78 Aligned_cols=53 Identities=17% Similarity=0.318 Sum_probs=41.9
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEec---------CCchHHHhccCeEEEEe
Q 007554 212 RPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIH---------QPSSEVFELFDRLYLLS 269 (599)
Q Consensus 212 ~p~illlDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H---------~p~~~i~~~~D~v~~L~ 269 (599)
+.+++++||--- +|+. +++.+++++..|..||++-+ .++.++..++|.|.-|+
T Consensus 81 ~~dvViIDEaqf-l~~~----~v~~l~~l~~~~~~Vi~~Gl~~df~~~~F~~~~~L~~~AD~V~el~ 142 (191)
T 1xx6_A 81 DTEVIAIDEVQF-FDDE----IVEIVNKIAESGRRVICAGLDMDFRGKPFGPIPELMAIAEFVDKIQ 142 (191)
T ss_dssp TCSEEEECSGGG-SCTH----HHHHHHHHHHTTCEEEEEECSBCTTSCBCTTHHHHHHHCSEEEECC
T ss_pred cCCEEEEECCCC-CCHH----HHHHHHHHHhCCCEEEEEecccccccCcCccHHHHHHHcccEEeee
Confidence 479999999543 6643 35677777777999999998 66688899999998875
No 273
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=95.96 E-value=0.0041 Score=58.93 Aligned_cols=28 Identities=36% Similarity=0.457 Sum_probs=24.4
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHcCCCC
Q 007554 81 PGTLTALMGPSGSGKSTLLDALSSRLAS 108 (599)
Q Consensus 81 ~Ge~~aI~G~sGsGKSTLl~~L~G~~~~ 108 (599)
+|.+++|.|++||||||+.+.|+..+..
T Consensus 3 ~~~~I~i~G~~GsGKsT~~~~L~~~l~~ 30 (213)
T 2plr_A 3 KGVLIAFEGIDGSGKSSQATLLKDWIEL 30 (213)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHTT
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHhh
Confidence 4778999999999999999999876543
No 274
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=95.94 E-value=0.0038 Score=58.82 Aligned_cols=23 Identities=39% Similarity=0.641 Sum_probs=21.0
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 007554 84 LTALMGPSGSGKSTLLDALSSRL 106 (599)
Q Consensus 84 ~~aI~G~sGsGKSTLl~~L~G~~ 106 (599)
+++|.|++||||||+.+.|+..+
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~l 24 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKKL 24 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCccCHHHHHHHHHHhc
Confidence 58999999999999999999754
No 275
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=95.93 E-value=0.0034 Score=58.33 Aligned_cols=25 Identities=36% Similarity=0.383 Sum_probs=22.3
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHcC
Q 007554 81 PGTLTALMGPSGSGKSTLLDALSSR 105 (599)
Q Consensus 81 ~Ge~~aI~G~sGsGKSTLl~~L~G~ 105 (599)
++..+.|.|++||||||+.+.|+..
T Consensus 10 ~~~~i~i~G~~GsGKst~~~~l~~~ 34 (180)
T 3iij_A 10 LLPNILLTGTPGVGKTTLGKELASK 34 (180)
T ss_dssp CCCCEEEECSTTSSHHHHHHHHHHH
T ss_pred cCCeEEEEeCCCCCHHHHHHHHHHH
Confidence 5678999999999999999999844
No 276
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=95.91 E-value=0.025 Score=58.87 Aligned_cols=27 Identities=37% Similarity=0.604 Sum_probs=22.6
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHHcCC
Q 007554 80 EPGTLTALMGPSGSGKSTLLDALSSRL 106 (599)
Q Consensus 80 ~~Ge~~aI~G~sGsGKSTLl~~L~G~~ 106 (599)
.+..-+.|.||+|+|||||.++++...
T Consensus 82 ~~~~~iLL~GppGtGKT~la~ala~~~ 108 (355)
T 2qp9_X 82 KPTSGILLYGPPGTGKSYLAKAVATEA 108 (355)
T ss_dssp CCCCCEEEECSTTSCHHHHHHHHHHHH
T ss_pred CCCceEEEECCCCCcHHHHHHHHHHHh
Confidence 444568899999999999999998754
No 277
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=95.90 E-value=0.0031 Score=58.79 Aligned_cols=25 Identities=24% Similarity=0.361 Sum_probs=22.0
Q ss_pred eEEEEECCCCCcHHHHHHHHHcCCC
Q 007554 83 TLTALMGPSGSGKSTLLDALSSRLA 107 (599)
Q Consensus 83 e~~aI~G~sGsGKSTLl~~L~G~~~ 107 (599)
.+++|+|++|||||||++.|.+.+.
T Consensus 5 ~~i~i~G~sGsGKTTl~~~L~~~l~ 29 (169)
T 1xjc_A 5 NVWQVVGYKHSGKTTLMEKWVAAAV 29 (169)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHhhH
Confidence 4789999999999999999987654
No 278
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=95.88 E-value=0.0045 Score=57.02 Aligned_cols=22 Identities=32% Similarity=0.434 Sum_probs=20.3
Q ss_pred eEEEEECCCCCcHHHHHHHHHc
Q 007554 83 TLTALMGPSGSGKSTLLDALSS 104 (599)
Q Consensus 83 e~~aI~G~sGsGKSTLl~~L~G 104 (599)
.++.|.|++||||||+.+.|+.
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHHHHh
Confidence 4789999999999999999986
No 279
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*
Probab=95.86 E-value=0.015 Score=56.14 Aligned_cols=53 Identities=15% Similarity=0.268 Sum_probs=43.6
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEec---------CCchHHHhccCeEEEEe
Q 007554 212 RPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIH---------QPSSEVFELFDRLYLLS 269 (599)
Q Consensus 212 ~p~illlDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H---------~p~~~i~~~~D~v~~L~ 269 (599)
+.+++++||--- +|.. .++.+++++..|..||++-+ .++..+..++|.|.-|+
T Consensus 101 ~~dvViIDEaQF-~~~~----~V~~l~~l~~~~~~Vi~~Gl~~DF~~~~F~~~~~Ll~~AD~Vtel~ 162 (214)
T 2j9r_A 101 EMDVIAIDEVQF-FDGD----IVEVVQVLANRGYRVIVAGLDQDFRGLPFGQVPQLMAIAEHVTKLQ 162 (214)
T ss_dssp SCCEEEECCGGG-SCTT----HHHHHHHHHHTTCEEEEEECSBCTTSCBCTTHHHHHHHCSEEEECC
T ss_pred CCCEEEEECccc-CCHH----HHHHHHHHhhCCCEEEEEecccccccCccccHHHHHHhcccEEeee
Confidence 579999999865 6543 33777777777999999999 78889999999999986
No 280
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=95.82 E-value=0.0043 Score=62.82 Aligned_cols=36 Identities=31% Similarity=0.418 Sum_probs=27.9
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECC
Q 007554 80 EPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNG 120 (599)
Q Consensus 80 ~~Ge~~aI~G~sGsGKSTLl~~L~G~~~~~~~~~G~I~~~g 120 (599)
..|.++.|.|||||||||+.+.|+...+ .|.+.+++
T Consensus 31 ~~~~livl~G~sGsGKSTla~~L~~~~~-----~~~~~Is~ 66 (287)
T 1gvn_B 31 ESPTAFLLGGQPGSGKTSLRSAIFEETQ-----GNVIVIDN 66 (287)
T ss_dssp SSCEEEEEECCTTSCTHHHHHHHHHHTT-----TCCEEECT
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhC-----CCeEEEec
Confidence 3578999999999999999999986542 24455654
No 281
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=95.78 E-value=0.0046 Score=58.75 Aligned_cols=27 Identities=33% Similarity=0.375 Sum_probs=23.8
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHHcCC
Q 007554 80 EPGTLTALMGPSGSGKSTLLDALSSRL 106 (599)
Q Consensus 80 ~~Ge~~aI~G~sGsGKSTLl~~L~G~~ 106 (599)
.+|.+++|.|++||||||+.+.|+..+
T Consensus 8 ~~~~~I~l~G~~GsGKST~~~~L~~~l 34 (212)
T 2wwf_A 8 KKGKFIVFEGLDRSGKSTQSKLLVEYL 34 (212)
T ss_dssp BCSCEEEEEESTTSSHHHHHHHHHHHH
T ss_pred hcCCEEEEEcCCCCCHHHHHHHHHHHH
Confidence 467899999999999999999998643
No 282
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=95.75 E-value=0.0047 Score=57.10 Aligned_cols=23 Identities=48% Similarity=0.573 Sum_probs=20.6
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 007554 84 LTALMGPSGSGKSTLLDALSSRL 106 (599)
Q Consensus 84 ~~aI~G~sGsGKSTLl~~L~G~~ 106 (599)
.++|+|++||||||+.+.|+..+
T Consensus 6 ~i~i~G~~GsGKsTla~~La~~l 28 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAKDL 28 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHc
Confidence 48899999999999999998654
No 283
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=95.75 E-value=0.0049 Score=58.04 Aligned_cols=24 Identities=38% Similarity=0.465 Sum_probs=21.6
Q ss_pred CeEEEEECCCCCcHHHHHHHHHcC
Q 007554 82 GTLTALMGPSGSGKSTLLDALSSR 105 (599)
Q Consensus 82 Ge~~aI~G~sGsGKSTLl~~L~G~ 105 (599)
..+++|.|++||||||+.+.|+..
T Consensus 8 ~~~I~i~G~~GsGKST~~~~La~~ 31 (203)
T 1uf9_A 8 PIIIGITGNIGSGKSTVAALLRSW 31 (203)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHHT
T ss_pred ceEEEEECCCCCCHHHHHHHHHHC
Confidence 357999999999999999999864
No 284
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=95.75 E-value=0.0045 Score=57.96 Aligned_cols=27 Identities=22% Similarity=0.422 Sum_probs=23.5
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHHcCC
Q 007554 80 EPGTLTALMGPSGSGKSTLLDALSSRL 106 (599)
Q Consensus 80 ~~Ge~~aI~G~sGsGKSTLl~~L~G~~ 106 (599)
.++.+++|.|++||||||+.+.|+..+
T Consensus 7 ~~~~~I~l~G~~GsGKsT~~~~La~~l 33 (196)
T 2c95_A 7 KKTNIIFVVGGPGSGKGTQCEKIVQKY 33 (196)
T ss_dssp TTSCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHHHh
Confidence 367799999999999999999998543
No 285
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=95.75 E-value=0.0023 Score=60.96 Aligned_cols=24 Identities=42% Similarity=0.656 Sum_probs=21.8
Q ss_pred EEEEECCCCCcHHHHHHHHHcCCC
Q 007554 84 LTALMGPSGSGKSTLLDALSSRLA 107 (599)
Q Consensus 84 ~~aI~G~sGsGKSTLl~~L~G~~~ 107 (599)
+++|.|++||||||+++.|+..+.
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~~l~ 25 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSGAFR 25 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHH
Confidence 689999999999999999998764
No 286
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=95.73 E-value=0.1 Score=64.49 Aligned_cols=29 Identities=28% Similarity=0.373 Sum_probs=26.2
Q ss_pred EEeCCeEEEEECCCCCcHHHHHHHHHcCC
Q 007554 78 YAEPGTLTALMGPSGSGKSTLLDALSSRL 106 (599)
Q Consensus 78 ~i~~Ge~~aI~G~sGsGKSTLl~~L~G~~ 106 (599)
=+++|+++.|.||+|+|||||+..++...
T Consensus 728 Gl~~G~lVlI~G~PG~GKTtLal~lA~~a 756 (1706)
T 3cmw_A 728 GLPMGRIVEIYGPESSGKTTLTLQVIAAA 756 (1706)
T ss_dssp SEETTSEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CcCCCceEEEECCCCCCcHHHHHHHHHHH
Confidence 48999999999999999999999887643
No 287
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=95.67 E-value=0.0062 Score=56.74 Aligned_cols=25 Identities=20% Similarity=0.363 Sum_probs=21.5
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHcC
Q 007554 81 PGTLTALMGPSGSGKSTLLDALSSR 105 (599)
Q Consensus 81 ~Ge~~aI~G~sGsGKSTLl~~L~G~ 105 (599)
++.+++|.|++||||||+.+.|+..
T Consensus 2 ~~~~I~l~G~~GsGKsT~a~~L~~~ 26 (196)
T 1tev_A 2 KPLVVFVLGGPGAGKGTQCARIVEK 26 (196)
T ss_dssp -CEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHH
Confidence 3568999999999999999999753
No 288
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=95.66 E-value=0.0053 Score=58.41 Aligned_cols=27 Identities=37% Similarity=0.425 Sum_probs=24.1
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHHcCC
Q 007554 80 EPGTLTALMGPSGSGKSTLLDALSSRL 106 (599)
Q Consensus 80 ~~Ge~~aI~G~sGsGKSTLl~~L~G~~ 106 (599)
++|.+++|.|++||||||+.+.|+..+
T Consensus 7 ~~~~~I~l~G~~GsGKsT~~~~L~~~l 33 (215)
T 1nn5_A 7 RRGALIVLEGVDRAGKSTQSRKLVEAL 33 (215)
T ss_dssp CCCCEEEEEESTTSSHHHHHHHHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 468899999999999999999998654
No 289
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.64 E-value=0.071 Score=56.40 Aligned_cols=24 Identities=33% Similarity=0.533 Sum_probs=21.1
Q ss_pred eEEEEECCCCCcHHHHHHHHHcCC
Q 007554 83 TLTALMGPSGSGKSTLLDALSSRL 106 (599)
Q Consensus 83 e~~aI~G~sGsGKSTLl~~L~G~~ 106 (599)
.=+.+.||+|+|||+|.+++++..
T Consensus 183 rGvLL~GPPGTGKTllAkAiA~e~ 206 (405)
T 4b4t_J 183 KGVILYGPPGTGKTLLARAVAHHT 206 (405)
T ss_dssp CCEEEESCSSSSHHHHHHHHHHHH
T ss_pred CceEEeCCCCCCHHHHHHHHHHhh
Confidence 338899999999999999999864
No 290
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=95.62 E-value=0.0054 Score=57.06 Aligned_cols=23 Identities=35% Similarity=0.514 Sum_probs=20.8
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 007554 84 LTALMGPSGSGKSTLLDALSSRL 106 (599)
Q Consensus 84 ~~aI~G~sGsGKSTLl~~L~G~~ 106 (599)
++.|.|++||||||+.+.|+..+
T Consensus 3 ~I~i~G~~GsGKsT~~~~L~~~l 25 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVLAKVKEIL 25 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 68999999999999999998654
No 291
>2orv_A Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2'deoxythymidil))tetraphosphate, transferase; HET: 4TA; 2.30A {Homo sapiens} SCOP: c.37.1.24 g.39.1.14
Probab=95.61 E-value=0.052 Score=52.99 Aligned_cols=53 Identities=17% Similarity=0.217 Sum_probs=44.8
Q ss_pred hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecC---------CchHHHhccCeEEEEe
Q 007554 211 MRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQ---------PSSEVFELFDRLYLLS 269 (599)
Q Consensus 211 ~~p~illlDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~---------p~~~i~~~~D~v~~L~ 269 (599)
.+.+++++||----.| +.+.++.+++.|+.||++-++ ++..+..++|.|.-|+
T Consensus 89 ~~~dvViIDEaQF~~~------v~el~~~l~~~gi~VI~~GL~~DF~~~~F~~~~~Ll~~AD~Vtelk 150 (234)
T 2orv_A 89 LGVAVIGIDEGQFFPD------IVEFCEAMANAGKTVIVAALDGTFQRKPFGAILNLVPLAESVVKLT 150 (234)
T ss_dssp TTCSEEEESSGGGCTT------HHHHHHHHHHTTCEEEEECCSBCTTSSBCTTGGGGGGGCSEEEECC
T ss_pred ccCCEEEEEchhhhhh------HHHHHHHHHhCCCEEEEEecccccccCCcccHHHHHHhcccEEeee
Confidence 6789999999877644 666666666689999999999 8889999999999986
No 292
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=95.58 E-value=0.079 Score=55.60 Aligned_cols=26 Identities=35% Similarity=0.608 Sum_probs=22.8
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHcCC
Q 007554 81 PGTLTALMGPSGSGKSTLLDALSSRL 106 (599)
Q Consensus 81 ~Ge~~aI~G~sGsGKSTLl~~L~G~~ 106 (599)
++.-+.|.||+|+|||+|.++|+...
T Consensus 147 ~~~~vLL~GppGtGKT~la~aia~~~ 172 (389)
T 3vfd_A 147 PARGLLLFGPPGNGKTMLAKAVAAES 172 (389)
T ss_dssp CCSEEEEESSTTSCHHHHHHHHHHHT
T ss_pred CCceEEEECCCCCCHHHHHHHHHHhh
Confidence 45679999999999999999998753
No 293
>1ko7_A HPR kinase/phosphatase; protein kinase, phosphotransfer, protein phosphatase, dual activity, product, substrate, transferase, hydrolase; 1.95A {Staphylococcus xylosus} SCOP: c.98.2.1 c.91.1.2
Probab=95.58 E-value=0.0094 Score=61.03 Aligned_cols=36 Identities=31% Similarity=0.280 Sum_probs=32.0
Q ss_pred cceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcC
Q 007554 69 HNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSR 105 (599)
Q Consensus 69 ~~iL~~vs~~i~~Ge~~aI~G~sGsGKSTLl~~L~G~ 105 (599)
...+|+....+ .|.-++|+|+||+|||||...|.++
T Consensus 132 ~~~~H~~~v~~-~g~~vl~~G~sG~GKSt~a~~l~~~ 167 (314)
T 1ko7_A 132 TTSLHGVLVDV-YGVGVLITGDSGIGKSETALELIKR 167 (314)
T ss_dssp EEEEESEEEEE-TTEEEEEEESTTSSHHHHHHHHHHT
T ss_pred ceeeeEEEEEE-CCEEEEEEeCCCCCHHHHHHHHHhc
Confidence 46789988888 7899999999999999999999864
No 294
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=95.57 E-value=0.0051 Score=61.43 Aligned_cols=23 Identities=35% Similarity=0.536 Sum_probs=21.2
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 007554 84 LTALMGPSGSGKSTLLDALSSRL 106 (599)
Q Consensus 84 ~~aI~G~sGsGKSTLl~~L~G~~ 106 (599)
.++|+|++|||||||++.|+|..
T Consensus 5 ~i~lvG~~g~GKTTL~n~l~g~~ 27 (271)
T 3k53_A 5 TVALVGNPNVGKTTIFNALTGLR 27 (271)
T ss_dssp EEEEEECSSSSHHHHHHHHHTTC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58999999999999999999874
No 295
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=95.47 E-value=0.0056 Score=57.47 Aligned_cols=27 Identities=26% Similarity=0.434 Sum_probs=23.6
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHHcCC
Q 007554 80 EPGTLTALMGPSGSGKSTLLDALSSRL 106 (599)
Q Consensus 80 ~~Ge~~aI~G~sGsGKSTLl~~L~G~~ 106 (599)
+++.+++|.|++||||||+.+.|+..+
T Consensus 10 ~~~~~I~l~G~~GsGKsT~a~~L~~~l 36 (199)
T 2bwj_A 10 RKCKIIFIIGGPGSGKGTQCEKLVEKY 36 (199)
T ss_dssp HHSCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHh
Confidence 457789999999999999999998643
No 296
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=95.44 E-value=0.0067 Score=56.46 Aligned_cols=24 Identities=33% Similarity=0.555 Sum_probs=21.6
Q ss_pred eEEEEECCCCCcHHHHHHHHHcCC
Q 007554 83 TLTALMGPSGSGKSTLLDALSSRL 106 (599)
Q Consensus 83 e~~aI~G~sGsGKSTLl~~L~G~~ 106 (599)
-.++|+|++|+|||||++.|.+..
T Consensus 49 ~~i~vvG~~g~GKSsll~~l~~~~ 72 (193)
T 2ged_A 49 PSIIIAGPQNSGKTSLLTLLTTDS 72 (193)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHSS
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC
Confidence 368999999999999999999864
No 297
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=95.42 E-value=0.0069 Score=54.55 Aligned_cols=23 Identities=17% Similarity=0.404 Sum_probs=20.4
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 007554 84 LTALMGPSGSGKSTLLDALSSRL 106 (599)
Q Consensus 84 ~~aI~G~sGsGKSTLl~~L~G~~ 106 (599)
-++|+|++|+|||||++.+.+..
T Consensus 7 ~i~v~G~~~~GKssl~~~l~~~~ 29 (168)
T 1z2a_A 7 KMVVVGNGAVGKSSMIQRYCKGI 29 (168)
T ss_dssp EEEEECSTTSSHHHHHHHHHHCC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 47899999999999999998753
No 298
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=95.40 E-value=0.015 Score=54.03 Aligned_cols=22 Identities=27% Similarity=0.389 Sum_probs=19.0
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q 007554 84 LTALMGPSGSGKSTLLDALSSR 105 (599)
Q Consensus 84 ~~aI~G~sGsGKSTLl~~L~G~ 105 (599)
-++|+|++|+|||||++.+.+.
T Consensus 22 ki~ivG~~~vGKSsL~~~~~~~ 43 (184)
T 3ihw_A 22 KVGIVGNLSSGKSALVHRYLTG 43 (184)
T ss_dssp EEEEECCTTSCHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4899999999999999876654
No 299
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=95.40 E-value=0.0079 Score=54.65 Aligned_cols=23 Identities=26% Similarity=0.524 Sum_probs=20.3
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 007554 84 LTALMGPSGSGKSTLLDALSSRL 106 (599)
Q Consensus 84 ~~aI~G~sGsGKSTLl~~L~G~~ 106 (599)
-++|+|++|+|||||++.+.+..
T Consensus 6 ki~i~G~~~vGKSsl~~~l~~~~ 28 (175)
T 2nzj_A 6 RVVLLGDPGVGKTSLASLFAGKQ 28 (175)
T ss_dssp EEEEECCTTSSHHHHHHHHHCC-
T ss_pred EEEEECCCCccHHHHHHHHhcCC
Confidence 48999999999999999998754
No 300
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=95.37 E-value=0.0082 Score=54.19 Aligned_cols=22 Identities=32% Similarity=0.475 Sum_probs=20.1
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q 007554 84 LTALMGPSGSGKSTLLDALSSR 105 (599)
Q Consensus 84 ~~aI~G~sGsGKSTLl~~L~G~ 105 (599)
-++|+|++|+|||||++.+.+.
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~ 26 (172)
T 2erx_A 5 RVAVFGAGGVGKSSLVLRFVKG 26 (172)
T ss_dssp EEEEECCTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4789999999999999999874
No 301
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=95.36 E-value=0.0083 Score=56.14 Aligned_cols=23 Identities=39% Similarity=0.554 Sum_probs=20.8
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 007554 84 LTALMGPSGSGKSTLLDALSSRL 106 (599)
Q Consensus 84 ~~aI~G~sGsGKSTLl~~L~G~~ 106 (599)
+++|.|++||||||+.+.|+..+
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l 24 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQYL 24 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 58999999999999999998765
No 302
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=95.36 E-value=0.0089 Score=57.46 Aligned_cols=26 Identities=35% Similarity=0.583 Sum_probs=22.8
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHcCC
Q 007554 81 PGTLTALMGPSGSGKSTLLDALSSRL 106 (599)
Q Consensus 81 ~Ge~~aI~G~sGsGKSTLl~~L~G~~ 106 (599)
+|-.+.|+|++||||||+.+.|+..+
T Consensus 3 ~~~~I~l~G~~GsGKsT~a~~La~~l 28 (220)
T 1aky_A 3 ESIRMVLIGPPGAGKGTQAPNLQERF 28 (220)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 56789999999999999999998643
No 303
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=95.31 E-value=0.0082 Score=56.72 Aligned_cols=23 Identities=35% Similarity=0.622 Sum_probs=21.2
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 007554 84 LTALMGPSGSGKSTLLDALSSRL 106 (599)
Q Consensus 84 ~~aI~G~sGsGKSTLl~~L~G~~ 106 (599)
+++|.|++||||||+.+.|+..+
T Consensus 4 ~i~i~G~~GsGKst~~~~la~~l 26 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAAAL 26 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHhc
Confidence 79999999999999999998754
No 304
>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2
Probab=95.31 E-value=0.012 Score=61.58 Aligned_cols=39 Identities=26% Similarity=0.321 Sum_probs=28.3
Q ss_pred CeEEEEECCCCCcHHHHHHHHHcCCC-----C---CCCceeEEEECC
Q 007554 82 GTLTALMGPSGSGKSTLLDALSSRLA-----S---NAFLSGTILLNG 120 (599)
Q Consensus 82 Ge~~aI~G~sGsGKSTLl~~L~G~~~-----~---~~~~~G~I~~~g 120 (599)
|-.++|+|.+|+|||||+|.|+|... | -.+..|.+.++|
T Consensus 2 ~~kI~IVG~pnvGKSTL~n~Lt~~~~~v~~~p~tTi~p~~g~v~~~~ 48 (363)
T 1jal_A 2 GFKCGIVGLPNVGKSTLFNALTKAGIEAANYPFCTIEPNTGVVPMPD 48 (363)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHTC------CCCCCCCCSSEEECCC
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCCCcccCCCCceECceEEEEecCC
Confidence 34689999999999999999998431 0 012367777765
No 305
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=95.30 E-value=0.0082 Score=53.74 Aligned_cols=23 Identities=26% Similarity=0.458 Sum_probs=20.6
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 007554 84 LTALMGPSGSGKSTLLDALSSRL 106 (599)
Q Consensus 84 ~~aI~G~sGsGKSTLl~~L~G~~ 106 (599)
.++|+|++|+|||||++.+.+..
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~~ 25 (161)
T 2dyk_A 3 KVVIVGRPNVGKSSLFNRLLKKR 25 (161)
T ss_dssp EEEEECCTTSSHHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 47899999999999999998764
No 306
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=95.30 E-value=0.0082 Score=53.83 Aligned_cols=23 Identities=26% Similarity=0.407 Sum_probs=20.2
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 007554 84 LTALMGPSGSGKSTLLDALSSRL 106 (599)
Q Consensus 84 ~~aI~G~sGsGKSTLl~~L~G~~ 106 (599)
-++|+|++|+|||||++.+.+..
T Consensus 5 ~i~v~G~~~~GKSsli~~l~~~~ 27 (167)
T 1kao_A 5 KVVVLGSGGVGKSALTVQFVTGT 27 (167)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 47999999999999999998653
No 307
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=95.28 E-value=0.0066 Score=54.75 Aligned_cols=23 Identities=30% Similarity=0.417 Sum_probs=20.0
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 007554 84 LTALMGPSGSGKSTLLDALSSRL 106 (599)
Q Consensus 84 ~~aI~G~sGsGKSTLl~~L~G~~ 106 (599)
-++|+|++|+|||||++.+.|..
T Consensus 4 ki~~vG~~~~GKSsli~~l~~~~ 26 (166)
T 3q72_A 4 KVLLLGAPGVGKSALARIFGGVE 26 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHCCC-
T ss_pred EEEEECCCCCCHHHHHHHHcCcc
Confidence 37899999999999999998754
No 308
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=95.28 E-value=0.0082 Score=53.87 Aligned_cols=23 Identities=26% Similarity=0.309 Sum_probs=20.4
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 007554 84 LTALMGPSGSGKSTLLDALSSRL 106 (599)
Q Consensus 84 ~~aI~G~sGsGKSTLl~~L~G~~ 106 (599)
-++++|++|+|||||++.+.+..
T Consensus 6 ~i~v~G~~~~GKssl~~~l~~~~ 28 (168)
T 1u8z_A 6 KVIMVGSGGVGKSALTLQFMYDE 28 (168)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHhCc
Confidence 47899999999999999998753
No 309
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=95.28 E-value=0.009 Score=54.02 Aligned_cols=22 Identities=41% Similarity=0.543 Sum_probs=19.6
Q ss_pred EEEECCCCCcHHHHHHHHHcCC
Q 007554 85 TALMGPSGSGKSTLLDALSSRL 106 (599)
Q Consensus 85 ~aI~G~sGsGKSTLl~~L~G~~ 106 (599)
++|+|++|+|||||++.+.+..
T Consensus 5 i~ivG~~~~GKSsli~~l~~~~ 26 (169)
T 3q85_A 5 VMLVGESGVGKSTLAGTFGGLQ 26 (169)
T ss_dssp EEEECSTTSSHHHHHHHHHCC-
T ss_pred EEEECCCCCCHHHHHHHHHhcc
Confidence 7899999999999999998754
No 310
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=95.26 E-value=0.0066 Score=56.18 Aligned_cols=26 Identities=31% Similarity=0.488 Sum_probs=18.3
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHcCC
Q 007554 81 PGTLTALMGPSGSGKSTLLDALSSRL 106 (599)
Q Consensus 81 ~Ge~~aI~G~sGsGKSTLl~~L~G~~ 106 (599)
++.++.|.|++||||||+.+.|+..+
T Consensus 4 ~~~~I~l~G~~GsGKST~a~~La~~l 29 (183)
T 2vli_A 4 RSPIIWINGPFGVGKTHTAHTLHERL 29 (183)
T ss_dssp -CCEEEEECCC----CHHHHHHHHHS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhc
Confidence 46789999999999999999998544
No 311
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=95.23 E-value=0.0076 Score=53.86 Aligned_cols=23 Identities=30% Similarity=0.365 Sum_probs=20.5
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 007554 84 LTALMGPSGSGKSTLLDALSSRL 106 (599)
Q Consensus 84 ~~aI~G~sGsGKSTLl~~L~G~~ 106 (599)
.++++|++|+|||||++.+.+..
T Consensus 5 ~i~v~G~~~~GKssl~~~l~~~~ 27 (166)
T 2ce2_X 5 KLVVVGAGGVGKSALTIQLIQNH 27 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHhCc
Confidence 37999999999999999998753
No 312
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=95.22 E-value=0.0089 Score=53.92 Aligned_cols=23 Identities=26% Similarity=0.440 Sum_probs=20.8
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 007554 84 LTALMGPSGSGKSTLLDALSSRL 106 (599)
Q Consensus 84 ~~aI~G~sGsGKSTLl~~L~G~~ 106 (599)
-++|+|++|+|||||++.+.+..
T Consensus 8 ~i~v~G~~~~GKSsli~~l~~~~ 30 (170)
T 1z0j_A 8 KVCLLGDTGVGKSSIMWRFVEDS 30 (170)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 47999999999999999999864
No 313
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=95.21 E-value=0.009 Score=53.98 Aligned_cols=23 Identities=22% Similarity=0.303 Sum_probs=20.5
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 007554 84 LTALMGPSGSGKSTLLDALSSRL 106 (599)
Q Consensus 84 ~~aI~G~sGsGKSTLl~~L~G~~ 106 (599)
-++|+|++|+|||||++.+.+..
T Consensus 8 ~i~v~G~~~~GKssli~~l~~~~ 30 (170)
T 1z08_A 8 KVVLLGEGCVGKTSLVLRYCENK 30 (170)
T ss_dssp EEEEECCTTSCHHHHHHHHHHCC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 47999999999999999998753
No 314
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=95.19 E-value=0.0091 Score=53.77 Aligned_cols=23 Identities=26% Similarity=0.338 Sum_probs=20.4
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 007554 84 LTALMGPSGSGKSTLLDALSSRL 106 (599)
Q Consensus 84 ~~aI~G~sGsGKSTLl~~L~G~~ 106 (599)
-++|+|++|+|||||++.+.+..
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~~ 27 (170)
T 1ek0_A 5 KLVLLGEAAVGKSSIVLRFVSND 27 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 37899999999999999998754
No 315
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=95.18 E-value=0.0093 Score=57.69 Aligned_cols=27 Identities=26% Similarity=0.443 Sum_probs=22.2
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHHcCC
Q 007554 80 EPGTLTALMGPSGSGKSTLLDALSSRL 106 (599)
Q Consensus 80 ~~Ge~~aI~G~sGsGKSTLl~~L~G~~ 106 (599)
.++.+++|.|++||||||+.+.|+..+
T Consensus 5 ~~~~~I~l~G~~GsGKsT~a~~La~~l 31 (227)
T 1zd8_A 5 ARLLRAVIMGAPGSGKGTVSSRITTHF 31 (227)
T ss_dssp --CCEEEEEECTTSSHHHHHHHHHHHS
T ss_pred ccCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 345789999999999999999998543
No 316
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=95.17 E-value=0.0086 Score=54.65 Aligned_cols=23 Identities=35% Similarity=0.492 Sum_probs=20.5
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 007554 84 LTALMGPSGSGKSTLLDALSSRL 106 (599)
Q Consensus 84 ~~aI~G~sGsGKSTLl~~L~G~~ 106 (599)
-++|+|++|+|||||++.|.+..
T Consensus 11 ~i~v~G~~~~GKssl~~~l~~~~ 33 (181)
T 3tw8_B 11 KLLIIGDSGVGKSSLLLRFADNT 33 (181)
T ss_dssp EEEEECCTTSCHHHHHHHHCSCC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 47999999999999999998753
No 317
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=95.17 E-value=0.16 Score=54.47 Aligned_cols=27 Identities=30% Similarity=0.452 Sum_probs=24.0
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHcCCC
Q 007554 81 PGTLTALMGPSGSGKSTLLDALSSRLA 107 (599)
Q Consensus 81 ~Ge~~aI~G~sGsGKSTLl~~L~G~~~ 107 (599)
++.+++++|++|+||||++..|+..+.
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~~l~ 125 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLARYFQ 125 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CCeEEEEECcCCCCHHHHHHHHHHHHH
Confidence 468999999999999999999987654
No 318
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=95.16 E-value=0.0093 Score=53.61 Aligned_cols=22 Identities=27% Similarity=0.406 Sum_probs=19.9
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q 007554 84 LTALMGPSGSGKSTLLDALSSR 105 (599)
Q Consensus 84 ~~aI~G~sGsGKSTLl~~L~G~ 105 (599)
-++|+|++|+|||||++.+.+.
T Consensus 5 ki~v~G~~~~GKssli~~l~~~ 26 (167)
T 1c1y_A 5 KLVVLGSGGVGKSALTVQFVQG 26 (167)
T ss_dssp EEEEECSTTSSHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 3789999999999999999875
No 319
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=95.15 E-value=0.0095 Score=54.30 Aligned_cols=23 Identities=30% Similarity=0.528 Sum_probs=20.4
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 007554 84 LTALMGPSGSGKSTLLDALSSRL 106 (599)
Q Consensus 84 ~~aI~G~sGsGKSTLl~~L~G~~ 106 (599)
-++|+|++|+|||||++.+.+..
T Consensus 9 ~i~v~G~~~~GKSsli~~l~~~~ 31 (177)
T 1wms_A 9 KVILLGDGGVGKSSLMNRYVTNK 31 (177)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 47999999999999999998753
No 320
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=95.15 E-value=0.0096 Score=54.38 Aligned_cols=23 Identities=26% Similarity=0.484 Sum_probs=20.5
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 007554 84 LTALMGPSGSGKSTLLDALSSRL 106 (599)
Q Consensus 84 ~~aI~G~sGsGKSTLl~~L~G~~ 106 (599)
-++|+|++|+|||||++.+.+..
T Consensus 10 ~i~v~G~~~~GKSsli~~l~~~~ 32 (182)
T 1ky3_A 10 KVIILGDSGVGKTSLMHRYVNDK 32 (182)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHhCc
Confidence 48999999999999999998754
No 321
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=95.14 E-value=0.01 Score=56.59 Aligned_cols=23 Identities=30% Similarity=0.486 Sum_probs=19.9
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 007554 84 LTALMGPSGSGKSTLLDALSSRL 106 (599)
Q Consensus 84 ~~aI~G~sGsGKSTLl~~L~G~~ 106 (599)
.++|.|++||||||+.+.|+..+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIEKY 24 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 37899999999999999997543
No 322
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=95.14 E-value=0.0062 Score=64.21 Aligned_cols=45 Identities=18% Similarity=0.203 Sum_probs=37.2
Q ss_pred CCCEEEEeCCCCCCC---HHHHHHHHHHHHHHHhCCCEEEEEecCCch
Q 007554 212 RPRLLFLDEPTSGLD---SAAAFFVTQTLRCLSRDGRTVIASIHQPSS 256 (599)
Q Consensus 212 ~p~illlDEPtsgLD---~~~~~~i~~~L~~l~~~g~tvi~~~H~p~~ 256 (599)
.|.++++||-=.=++ +..+..+.+.+++.++.|..++++||.|.+
T Consensus 262 ~~~~i~iDEa~~~~~~~~~~~~~~l~~~~~~~Rk~g~~~~~~tQ~~~d 309 (392)
T 4ag6_A 262 ERTVLVVDEAWMLVDPQTPQAIAFLRDTSKRIRKYNGSLIVISQNVID 309 (392)
T ss_dssp TTCEEEETTGGGGCCTTCTHHHHHHHHHHHHGGGGTCEEEEEESCGGG
T ss_pred ccEEEEEecHHHHhCcCchHHHHHHHHHHHHhhhhCeEEEEEcCCHHH
Confidence 578999999887774 667778888888888888999999999853
No 323
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=95.14 E-value=0.012 Score=55.70 Aligned_cols=26 Identities=35% Similarity=0.548 Sum_probs=22.3
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHcCC
Q 007554 81 PGTLTALMGPSGSGKSTLLDALSSRL 106 (599)
Q Consensus 81 ~Ge~~aI~G~sGsGKSTLl~~L~G~~ 106 (599)
.+-+++|.|++||||||+.+.|+..+
T Consensus 19 ~~~~I~l~G~~GsGKST~a~~La~~l 44 (201)
T 2cdn_A 19 SHMRVLLLGPPGAGKGTQAVKLAEKL 44 (201)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 34589999999999999999998643
No 324
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=95.13 E-value=0.0085 Score=54.06 Aligned_cols=23 Identities=39% Similarity=0.452 Sum_probs=20.4
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 007554 84 LTALMGPSGSGKSTLLDALSSRL 106 (599)
Q Consensus 84 ~~aI~G~sGsGKSTLl~~L~G~~ 106 (599)
-++|+|++|+|||||++.+.+..
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~~ 27 (170)
T 1g16_A 5 KILLIGDSGVGKSCLLVRFVEDK 27 (170)
T ss_dssp EEEEEESTTSSHHHHHHHHHHCC
T ss_pred EEEEECcCCCCHHHHHHHHHhCC
Confidence 37899999999999999998754
No 325
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=95.13 E-value=0.011 Score=55.08 Aligned_cols=23 Identities=43% Similarity=0.504 Sum_probs=20.7
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 007554 84 LTALMGPSGSGKSTLLDALSSRL 106 (599)
Q Consensus 84 ~~aI~G~sGsGKSTLl~~L~G~~ 106 (599)
+++|.|++||||||+.+.|+..+
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l 24 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYEYL 24 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 58999999999999999998654
No 326
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=95.13 E-value=0.012 Score=53.56 Aligned_cols=26 Identities=35% Similarity=0.520 Sum_probs=22.2
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHcCC
Q 007554 81 PGTLTALMGPSGSGKSTLLDALSSRL 106 (599)
Q Consensus 81 ~Ge~~aI~G~sGsGKSTLl~~L~G~~ 106 (599)
+.-.++|+|++|+|||||++.+.+..
T Consensus 7 ~~~~i~v~G~~~~GKssl~~~l~~~~ 32 (178)
T 2lkc_A 7 RPPVVTIMGHVDHGKTTLLDAIRHSK 32 (178)
T ss_dssp CCCEEEEESCTTTTHHHHHHHHHTTC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCc
Confidence 34568999999999999999998753
No 327
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=95.13 E-value=0.015 Score=58.43 Aligned_cols=23 Identities=30% Similarity=0.527 Sum_probs=21.1
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 007554 84 LTALMGPSGSGKSTLLDALSSRL 106 (599)
Q Consensus 84 ~~aI~G~sGsGKSTLl~~L~G~~ 106 (599)
.++|+|++|+|||||+|.|+|..
T Consensus 5 kI~lvG~~nvGKSTL~n~L~g~~ 27 (272)
T 3b1v_A 5 EIALIGNPNSGKTSLFNLITGHN 27 (272)
T ss_dssp EEEEECCTTSSHHHHHHHHHCCC
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
Confidence 58999999999999999999864
No 328
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=95.11 E-value=0.0099 Score=60.68 Aligned_cols=24 Identities=38% Similarity=0.499 Sum_probs=21.8
Q ss_pred eEEEEECCCCCcHHHHHHHHHcCC
Q 007554 83 TLTALMGPSGSGKSTLLDALSSRL 106 (599)
Q Consensus 83 e~~aI~G~sGsGKSTLl~~L~G~~ 106 (599)
..++|+|++|+|||||+|.|.|..
T Consensus 11 g~v~ivG~~nvGKSTLin~l~g~~ 34 (308)
T 3iev_A 11 GYVAIVGKPNVGKSTLLNNLLGTK 34 (308)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTSC
T ss_pred CEEEEECCCCCcHHHHHHHHhCCC
Confidence 389999999999999999999864
No 329
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=95.10 E-value=0.01 Score=58.47 Aligned_cols=24 Identities=25% Similarity=0.365 Sum_probs=21.4
Q ss_pred EEEEECCCCCcHHHHHHHHHcCCC
Q 007554 84 LTALMGPSGSGKSTLLDALSSRLA 107 (599)
Q Consensus 84 ~~aI~G~sGsGKSTLl~~L~G~~~ 107 (599)
-++|+|.+|+|||||+|.|.|...
T Consensus 23 ~I~lvG~~g~GKSSlin~l~~~~~ 46 (247)
T 3lxw_A 23 RLILVGRTGAGKSATGNSILGQRR 46 (247)
T ss_dssp EEEEESSTTSSHHHHHHHHHTSCC
T ss_pred EEEEECCCCCcHHHHHHHHhCCCC
Confidence 479999999999999999998643
No 330
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=95.09 E-value=0.12 Score=63.89 Aligned_cols=152 Identities=17% Similarity=0.177 Sum_probs=85.1
Q ss_pred ceeeceE--EEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCcCeEEEEcCCCCCCCCCCHHH
Q 007554 70 NVLEGLT--GYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLSFGTAAYVTQDDNLIGTLTVRE 147 (599)
Q Consensus 70 ~iL~~vs--~~i~~Ge~~aI~G~sGsGKSTLl~~L~G~~~~~~~~~G~I~~~g~~~~~~~~~~~yv~Q~~~l~~~lTV~e 147 (599)
.-|+.+- +=+++|+++.|.||+|+|||||.-.++..... .| ..+.|+.-+...-+ +
T Consensus 369 ~~LD~lLg~GGl~~G~lilI~G~pGsGKTtLaLq~a~~~~~----~G-------------~~vlyis~E~s~~~---~-- 426 (1706)
T 3cmw_A 369 LSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQR----EG-------------KTCAFIDAEHALDP---I-- 426 (1706)
T ss_dssp HHHHHHTSSSSEETTSEEEEECSTTSSHHHHHHHHHHHHHH----TT-------------CCEEEECTTSCCCH---H--
T ss_pred HHHHHHhccCCcCCCcEEEEEeCCCCCHHHHHHHHHHHHHH----hC-------------CCeEEEEccCchHH---H--
Confidence 3466654 35899999999999999999998776543211 11 23556655432211 1
Q ss_pred HHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHHHHHHHHHh--hCCCEEEEeCCCCCC
Q 007554 148 TISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEIL--MRPRLLFLDEPTSGL 225 (599)
Q Consensus 148 ~l~~~~~~~~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSGGerqRv~ia~aL~--~~p~illlDEPtsgL 225 (599)
.+.+ +|+.. .+-.+-+ + -++.| -+.+++.++ .+|+++++|..++=.
T Consensus 427 ---~a~~----------------------lGvd~-~~L~i~~--~--~~~e~--~l~~l~~lv~~~~~~lVVIDSL~al~ 474 (1706)
T 3cmw_A 427 ---YARK----------------------LGVDI-DNLLCSQ--P--DTGEQ--ALEICDALARSGAVDVIVVDSVAALT 474 (1706)
T ss_dssp ---HHHH----------------------TTCCG-GGCEEEC--C--SSHHH--HHHHHHHHHHHTCCSEEEESCSTTCC
T ss_pred ---HHHH----------------------cCCCH-HHeEEcC--C--CCHHH--HHHHHHHHHHhcCCCEEEECCHHHhh
Confidence 0111 12110 0000100 1 13333 234555554 579999999998766
Q ss_pred CH-------------HHHHHHHHHHHHH---H-hCCCEEEEEecCCc---------------hHHHhccCeEEEEeCCeE
Q 007554 226 DS-------------AAAFFVTQTLRCL---S-RDGRTVIASIHQPS---------------SEVFELFDRLYLLSGGKT 273 (599)
Q Consensus 226 D~-------------~~~~~i~~~L~~l---~-~~g~tvi~~~H~p~---------------~~i~~~~D~v~~L~~G~i 273 (599)
.. ...+.+.+.+++| + +.|.+||++.|-.. ..+...+|-++.+...+.
T Consensus 475 ~~~e~e~~~g~~~~~~q~r~~s~~Lr~L~~~ak~~~v~VI~inQl~~~vg~~fg~~~~p~gg~ale~~ADv~L~L~R~~~ 554 (1706)
T 3cmw_A 475 PKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGA 554 (1706)
T ss_dssp CHHHHHSCTTCCCTTHHHHHHHHHHHHHHHHHHHHTCEEEEEECEEECTTCCSSCCEEESSCSHHHHHEEEEEEEEEEEE
T ss_pred ccccccccccccchhHHHHHHHHHHHHHHHHHHHcCCEEEEEeecccccccccCCCccCCCCcceeeeCCEEEEEEeccc
Confidence 41 1233445555555 3 35899999987411 245677898888775443
Q ss_pred EE
Q 007554 274 VY 275 (599)
Q Consensus 274 v~ 275 (599)
+.
T Consensus 555 ~~ 556 (1706)
T 3cmw_A 555 VK 556 (1706)
T ss_dssp EE
T ss_pred cc
Confidence 33
No 331
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=95.07 E-value=0.012 Score=55.56 Aligned_cols=24 Identities=25% Similarity=0.411 Sum_probs=21.2
Q ss_pred CeEEEEECCCCCcHHHHHHHHHcC
Q 007554 82 GTLTALMGPSGSGKSTLLDALSSR 105 (599)
Q Consensus 82 Ge~~aI~G~sGsGKSTLl~~L~G~ 105 (599)
..+++|.|++||||||+.+.|+..
T Consensus 15 ~~~I~l~G~~GsGKsT~~~~L~~~ 38 (203)
T 1ukz_A 15 VSVIFVLGGPGAGKGTQCEKLVKD 38 (203)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHH
Confidence 457999999999999999999854
No 332
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=95.07 E-value=0.0091 Score=55.55 Aligned_cols=24 Identities=38% Similarity=0.515 Sum_probs=20.9
Q ss_pred eEEEEECCCCCcHHHHHHHHHcCC
Q 007554 83 TLTALMGPSGSGKSTLLDALSSRL 106 (599)
Q Consensus 83 e~~aI~G~sGsGKSTLl~~L~G~~ 106 (599)
-.++|+|++|+|||||++.|.+..
T Consensus 24 ~~i~v~G~~~~GKSsli~~l~~~~ 47 (195)
T 1svi_A 24 PEIALAGRSNVGKSSFINSLINRK 47 (195)
T ss_dssp CEEEEEEBTTSSHHHHHHHHHTC-
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 358999999999999999998753
No 333
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=95.05 E-value=0.01 Score=54.35 Aligned_cols=24 Identities=25% Similarity=0.378 Sum_probs=20.9
Q ss_pred eEEEEECCCCCcHHHHHHHHHcCC
Q 007554 83 TLTALMGPSGSGKSTLLDALSSRL 106 (599)
Q Consensus 83 e~~aI~G~sGsGKSTLl~~L~G~~ 106 (599)
.+++|.|++||||||+.+.|+..+
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~l 26 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELARAL 26 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHHh
Confidence 368999999999999999998643
No 334
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=95.04 E-value=0.0085 Score=55.53 Aligned_cols=23 Identities=39% Similarity=0.564 Sum_probs=20.6
Q ss_pred eEEEEECCCCCcHHHHHHHHHcC
Q 007554 83 TLTALMGPSGSGKSTLLDALSSR 105 (599)
Q Consensus 83 e~~aI~G~sGsGKSTLl~~L~G~ 105 (599)
-.++|+|++|+|||||++.+.+.
T Consensus 17 ~ki~ivG~~~vGKSsL~~~l~~~ 39 (181)
T 1fzq_A 17 VRILLLGLDNAGKTTLLKQLASE 39 (181)
T ss_dssp EEEEEEESTTSSHHHHHHHHCCS
T ss_pred eEEEEECCCCCCHHHHHHHHhcC
Confidence 35899999999999999999865
No 335
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=95.02 E-value=0.0096 Score=54.32 Aligned_cols=22 Identities=27% Similarity=0.344 Sum_probs=20.3
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q 007554 84 LTALMGPSGSGKSTLLDALSSR 105 (599)
Q Consensus 84 ~~aI~G~sGsGKSTLl~~L~G~ 105 (599)
-++|+|++|+|||||++.+.+.
T Consensus 11 ~i~v~G~~~~GKssli~~l~~~ 32 (181)
T 2fn4_A 11 KLVVVGGGGVGKSALTIQFIQS 32 (181)
T ss_dssp EEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4899999999999999999876
No 336
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=95.01 E-value=0.013 Score=53.62 Aligned_cols=24 Identities=42% Similarity=0.508 Sum_probs=21.5
Q ss_pred eEEEEECCCCCcHHHHHHHHHcCC
Q 007554 83 TLTALMGPSGSGKSTLLDALSSRL 106 (599)
Q Consensus 83 e~~aI~G~sGsGKSTLl~~L~G~~ 106 (599)
+.++|.|++||||||+.+.|+..+
T Consensus 8 ~~i~l~G~~GsGKSTva~~La~~l 31 (168)
T 1zuh_A 8 QHLVLIGFMGSGKSSLAQELGLAL 31 (168)
T ss_dssp CEEEEESCTTSSHHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHHh
Confidence 689999999999999999998643
No 337
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=95.00 E-value=0.0096 Score=57.30 Aligned_cols=26 Identities=19% Similarity=0.299 Sum_probs=22.2
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHcCC
Q 007554 81 PGTLTALMGPSGSGKSTLLDALSSRL 106 (599)
Q Consensus 81 ~Ge~~aI~G~sGsGKSTLl~~L~G~~ 106 (599)
.+..+.|+|++||||||+.+.|+..+
T Consensus 4 ~~~~I~l~G~~GsGKsT~~~~La~~l 29 (222)
T 1zak_A 4 DPLKVMISGAPASGKGTQCELIKTKY 29 (222)
T ss_dssp CSCCEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 34678999999999999999998543
No 338
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=94.99 E-value=0.0099 Score=55.04 Aligned_cols=23 Identities=48% Similarity=0.599 Sum_probs=21.0
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 007554 84 LTALMGPSGSGKSTLLDALSSRL 106 (599)
Q Consensus 84 ~~aI~G~sGsGKSTLl~~L~G~~ 106 (599)
.++|+|++|+|||||++.+.+..
T Consensus 25 ~i~v~G~~~~GKSsli~~l~~~~ 47 (195)
T 3pqc_A 25 EVAFVGRSNVGKSSLLNALFNRK 47 (195)
T ss_dssp EEEEEEBTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCc
Confidence 58999999999999999998864
No 339
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=94.99 E-value=0.011 Score=53.16 Aligned_cols=22 Identities=32% Similarity=0.397 Sum_probs=19.9
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q 007554 84 LTALMGPSGSGKSTLLDALSSR 105 (599)
Q Consensus 84 ~~aI~G~sGsGKSTLl~~L~G~ 105 (599)
-++|+|++|+|||||++.+.+.
T Consensus 8 ~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1r2q_A 8 KLVLLGESAVGKSSLVLRFVKG 29 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4789999999999999999864
No 340
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=94.98 E-value=0.013 Score=53.32 Aligned_cols=23 Identities=43% Similarity=0.351 Sum_probs=20.3
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 007554 84 LTALMGPSGSGKSTLLDALSSRL 106 (599)
Q Consensus 84 ~~aI~G~sGsGKSTLl~~L~G~~ 106 (599)
.++|.|++||||||+.+.|+..+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~l 24 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSRSL 24 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999998643
No 341
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=94.98 E-value=0.012 Score=56.12 Aligned_cols=23 Identities=30% Similarity=0.436 Sum_probs=19.9
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 007554 84 LTALMGPSGSGKSTLLDALSSRL 106 (599)
Q Consensus 84 ~~aI~G~sGsGKSTLl~~L~G~~ 106 (599)
.++|+|++||||||+.+.|+..+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVEKY 24 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 37899999999999999997543
No 342
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=94.97 E-value=0.011 Score=54.79 Aligned_cols=23 Identities=35% Similarity=0.472 Sum_probs=20.8
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 007554 84 LTALMGPSGSGKSTLLDALSSRL 106 (599)
Q Consensus 84 ~~aI~G~sGsGKSTLl~~L~G~~ 106 (599)
-++|+|++|+|||||++.|.+..
T Consensus 9 ki~v~G~~~~GKSsli~~l~~~~ 31 (208)
T 3clv_A 9 KTVLLGESSVGKSSIVLRLTKDT 31 (208)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHhCc
Confidence 48999999999999999999864
No 343
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=94.96 E-value=0.014 Score=57.89 Aligned_cols=25 Identities=36% Similarity=0.373 Sum_probs=22.5
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHcC
Q 007554 81 PGTLTALMGPSGSGKSTLLDALSSR 105 (599)
Q Consensus 81 ~Ge~~aI~G~sGsGKSTLl~~L~G~ 105 (599)
++.++.|.|++||||||+.+.|+..
T Consensus 3 ~~~lIvl~G~pGSGKSTla~~La~~ 27 (260)
T 3a4m_A 3 DIMLIILTGLPGVGKSTFSKNLAKI 27 (260)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCEEEEEEcCCCCCHHHHHHHHHHH
Confidence 4678999999999999999999865
No 344
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=94.96 E-value=0.012 Score=54.27 Aligned_cols=23 Identities=30% Similarity=0.367 Sum_probs=20.6
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 007554 84 LTALMGPSGSGKSTLLDALSSRL 106 (599)
Q Consensus 84 ~~aI~G~sGsGKSTLl~~L~G~~ 106 (599)
-++|+|++|+|||||++.|.+..
T Consensus 6 ki~v~G~~~~GKSsli~~l~~~~ 28 (189)
T 4dsu_A 6 KLVVVGADGVGKSALTIQLIQNH 28 (189)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHhCC
Confidence 47899999999999999998754
No 345
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=94.96 E-value=0.013 Score=53.47 Aligned_cols=23 Identities=22% Similarity=0.427 Sum_probs=20.4
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 007554 84 LTALMGPSGSGKSTLLDALSSRL 106 (599)
Q Consensus 84 ~~aI~G~sGsGKSTLl~~L~G~~ 106 (599)
-++|+|++|+|||||++.+.+..
T Consensus 8 ki~v~G~~~~GKssl~~~l~~~~ 30 (178)
T 2hxs_A 8 KIVVLGDGASGKTSLTTCFAQET 30 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHGGG
T ss_pred EEEEECcCCCCHHHHHHHHHhCc
Confidence 47999999999999999998753
No 346
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=94.95 E-value=0.013 Score=54.47 Aligned_cols=24 Identities=25% Similarity=0.383 Sum_probs=21.3
Q ss_pred CeEEEEECCCCCcHHHHHHHHHcC
Q 007554 82 GTLTALMGPSGSGKSTLLDALSSR 105 (599)
Q Consensus 82 Ge~~aI~G~sGsGKSTLl~~L~G~ 105 (599)
..+++|.|++||||||+.+.|+..
T Consensus 6 ~~~I~l~G~~GsGKsT~~~~L~~~ 29 (194)
T 1qf9_A 6 PNVVFVLGGPGSGKGTQCANIVRD 29 (194)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHH
Confidence 358999999999999999999754
No 347
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=94.94 E-value=0.011 Score=55.05 Aligned_cols=24 Identities=42% Similarity=0.534 Sum_probs=21.0
Q ss_pred eEEEEECCCCCcHHHHHHHHHcCC
Q 007554 83 TLTALMGPSGSGKSTLLDALSSRL 106 (599)
Q Consensus 83 e~~aI~G~sGsGKSTLl~~L~G~~ 106 (599)
.+++|+|++||||||+.+.|+..+
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~l 26 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGRRLAKAL 26 (184)
T ss_dssp CSEEEECSTTSSHHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHc
Confidence 468999999999999999998643
No 348
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=94.93 E-value=0.012 Score=53.22 Aligned_cols=23 Identities=30% Similarity=0.478 Sum_probs=20.4
Q ss_pred eEEEEECCCCCcHHHHHHHHHcC
Q 007554 83 TLTALMGPSGSGKSTLLDALSSR 105 (599)
Q Consensus 83 e~~aI~G~sGsGKSTLl~~L~G~ 105 (599)
-.++|+|++|+|||||++.+.+.
T Consensus 8 ~~i~v~G~~~~GKssl~~~l~~~ 30 (171)
T 1upt_A 8 MRILILGLDGAGKTTILYRLQVG 30 (171)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred cEEEEECCCCCCHHHHHHHHhcC
Confidence 35899999999999999999764
No 349
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=94.92 E-value=0.011 Score=54.66 Aligned_cols=22 Identities=36% Similarity=0.480 Sum_probs=20.0
Q ss_pred EEEECCCCCcHHHHHHHHHcCC
Q 007554 85 TALMGPSGSGKSTLLDALSSRL 106 (599)
Q Consensus 85 ~aI~G~sGsGKSTLl~~L~G~~ 106 (599)
++|+|++|+|||||++.+.+..
T Consensus 4 i~v~G~~~~GKSsli~~l~~~~ 25 (190)
T 2cxx_A 4 IIFAGRSNVGKSTLIYRLTGKK 25 (190)
T ss_dssp EEEEEBTTSSHHHHHHHHHSCC
T ss_pred EEEECCCCCCHHHHHHHHhCcC
Confidence 7899999999999999998753
No 350
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=94.91 E-value=0.012 Score=54.78 Aligned_cols=23 Identities=35% Similarity=0.564 Sum_probs=20.6
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 007554 84 LTALMGPSGSGKSTLLDALSSRL 106 (599)
Q Consensus 84 ~~aI~G~sGsGKSTLl~~L~G~~ 106 (599)
-++|+|++|+|||||++.|.+..
T Consensus 27 ki~v~G~~~~GKSsLi~~l~~~~ 49 (193)
T 2oil_A 27 KVVLIGESGVGKTNLLSRFTRNE 49 (193)
T ss_dssp EEEEESSTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 47999999999999999998753
No 351
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=94.90 E-value=0.012 Score=54.28 Aligned_cols=23 Identities=26% Similarity=0.354 Sum_probs=20.5
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 007554 84 LTALMGPSGSGKSTLLDALSSRL 106 (599)
Q Consensus 84 ~~aI~G~sGsGKSTLl~~L~G~~ 106 (599)
-++|+|++|+|||||++.+.+..
T Consensus 13 ki~v~G~~~~GKSsli~~l~~~~ 35 (195)
T 3bc1_A 13 KFLALGDSGVGKTSVLYQYTDGK 35 (195)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 47999999999999999998743
No 352
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=94.89 E-value=0.012 Score=52.77 Aligned_cols=21 Identities=29% Similarity=0.436 Sum_probs=19.1
Q ss_pred EEEECCCCCcHHHHHHHHHcC
Q 007554 85 TALMGPSGSGKSTLLDALSSR 105 (599)
Q Consensus 85 ~aI~G~sGsGKSTLl~~L~G~ 105 (599)
++|+|++|+|||||++.+.+.
T Consensus 3 i~~~G~~~~GKssl~~~l~~~ 23 (164)
T 1r8s_A 3 ILMVGLDAAGKTTILYKLKLG 23 (164)
T ss_dssp EEEECSTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHcC
Confidence 789999999999999999763
No 353
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=94.85 E-value=0.023 Score=54.22 Aligned_cols=36 Identities=28% Similarity=0.271 Sum_probs=29.7
Q ss_pred cceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcC
Q 007554 69 HNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSR 105 (599)
Q Consensus 69 ~~iL~~vs~~i~~Ge~~aI~G~sGsGKSTLl~~L~G~ 105 (599)
...++..-..+ .|..++|+||+|+|||||...|+.+
T Consensus 22 ~~~lHa~~v~~-~g~~ilI~GpsGsGKStLA~~La~~ 57 (205)
T 2qmh_A 22 RRSMHGVLVDI-YGLGVLITGDSGVGKSETALELVQR 57 (205)
T ss_dssp CCCEESEEEEE-TTEEEEEECCCTTTTHHHHHHHHTT
T ss_pred ceeeeEEEEEE-CCEEEEEECCCCCCHHHHHHHHHHh
Confidence 44677766665 5789999999999999999999865
No 354
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=94.83 E-value=0.016 Score=56.95 Aligned_cols=25 Identities=32% Similarity=0.419 Sum_probs=22.1
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHcC
Q 007554 81 PGTLTALMGPSGSGKSTLLDALSSR 105 (599)
Q Consensus 81 ~Ge~~aI~G~sGsGKSTLl~~L~G~ 105 (599)
++-.++|.||+||||||+.+.|+..
T Consensus 28 ~~~~I~l~G~~GsGKsT~a~~L~~~ 52 (243)
T 3tlx_A 28 PDGRYIFLGAPGSGKGTQSLNLKKS 52 (243)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHH
Confidence 5668999999999999999999754
No 355
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=94.80 E-value=0.015 Score=53.82 Aligned_cols=25 Identities=32% Similarity=0.393 Sum_probs=21.8
Q ss_pred EEEEECCCCCcHHHHHHHHHcCCCC
Q 007554 84 LTALMGPSGSGKSTLLDALSSRLAS 108 (599)
Q Consensus 84 ~~aI~G~sGsGKSTLl~~L~G~~~~ 108 (599)
-++|+|++|+|||||++.+.|....
T Consensus 16 ki~vvG~~~~GKssL~~~l~~~~~~ 40 (198)
T 3t1o_A 16 KIVYYGPGLSGKTTNLKWIYSKVPE 40 (198)
T ss_dssp EEEEECSTTSSHHHHHHHHHHTSCG
T ss_pred EEEEECCCCCCHHHHHHHHHhhccc
Confidence 4789999999999999999987543
No 356
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=94.78 E-value=0.014 Score=53.40 Aligned_cols=23 Identities=35% Similarity=0.468 Sum_probs=20.6
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 007554 84 LTALMGPSGSGKSTLLDALSSRL 106 (599)
Q Consensus 84 ~~aI~G~sGsGKSTLl~~L~G~~ 106 (599)
-++|+|++|+|||||++.+.+..
T Consensus 12 ~i~v~G~~~~GKssli~~l~~~~ 34 (180)
T 2g6b_A 12 KVMLVGDSGVGKTCLLVRFKDGA 34 (180)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHHhCC
Confidence 48999999999999999998754
No 357
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=94.77 E-value=0.014 Score=53.13 Aligned_cols=23 Identities=30% Similarity=0.502 Sum_probs=20.6
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 007554 84 LTALMGPSGSGKSTLLDALSSRL 106 (599)
Q Consensus 84 ~~aI~G~sGsGKSTLl~~L~G~~ 106 (599)
-++|+|++|+|||||++.+.+..
T Consensus 17 ~i~v~G~~~~GKSsli~~l~~~~ 39 (179)
T 1z0f_A 17 KYIIIGDMGVGKSCLLHQFTEKK 39 (179)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 48999999999999999998754
No 358
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=94.76 E-value=0.012 Score=53.49 Aligned_cols=22 Identities=18% Similarity=0.374 Sum_probs=19.9
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q 007554 84 LTALMGPSGSGKSTLLDALSSR 105 (599)
Q Consensus 84 ~~aI~G~sGsGKSTLl~~L~G~ 105 (599)
-++|+|++|+|||||++.+.+.
T Consensus 16 ~i~v~G~~~~GKssli~~l~~~ 37 (179)
T 2y8e_A 16 KLVFLGEQSVGKTSLITRFMYD 37 (179)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4899999999999999999864
No 359
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=94.76 E-value=0.014 Score=53.55 Aligned_cols=23 Identities=26% Similarity=0.309 Sum_probs=20.5
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 007554 84 LTALMGPSGSGKSTLLDALSSRL 106 (599)
Q Consensus 84 ~~aI~G~sGsGKSTLl~~L~G~~ 106 (599)
-++|+|++|+|||||++.+.+..
T Consensus 20 ki~v~G~~~~GKSsli~~l~~~~ 42 (187)
T 2a9k_A 20 KVIMVGSGGVGKSALTLQFMYDE 42 (187)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhhCC
Confidence 48999999999999999998753
No 360
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=94.75 E-value=0.025 Score=52.79 Aligned_cols=35 Identities=20% Similarity=0.049 Sum_probs=28.2
Q ss_pred cceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHc
Q 007554 69 HNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSS 104 (599)
Q Consensus 69 ~~iL~~vs~~i~~Ge~~aI~G~sGsGKSTLl~~L~G 104 (599)
+..+|..-..+ .|.-++|.|+||+|||||...|..
T Consensus 4 ~~~lHas~v~v-~G~gvli~G~SGaGKStlal~L~~ 38 (181)
T 3tqf_A 4 KQTWHANFLVI-DKMGVLITGEANIGKSELSLALID 38 (181)
T ss_dssp CEEEESEEEEE-TTEEEEEEESSSSSHHHHHHHHHH
T ss_pred cEEEEEEEEEE-CCEEEEEEcCCCCCHHHHHHHHHH
Confidence 44566666655 588999999999999999988865
No 361
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=94.72 E-value=0.014 Score=54.03 Aligned_cols=23 Identities=30% Similarity=0.365 Sum_probs=20.7
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 007554 84 LTALMGPSGSGKSTLLDALSSRL 106 (599)
Q Consensus 84 ~~aI~G~sGsGKSTLl~~L~G~~ 106 (599)
.++++|++|+|||||++.|.+..
T Consensus 23 ki~vvG~~~~GKSsli~~l~~~~ 45 (190)
T 3con_A 23 KLVVVGAGGVGKSALTIQLIQNH 45 (190)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 48999999999999999998753
No 362
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=94.72 E-value=0.016 Score=54.95 Aligned_cols=24 Identities=29% Similarity=0.523 Sum_probs=21.3
Q ss_pred CeEEEEECCCCCcHHHHHHHHHcC
Q 007554 82 GTLTALMGPSGSGKSTLLDALSSR 105 (599)
Q Consensus 82 Ge~~aI~G~sGsGKSTLl~~L~G~ 105 (599)
.-+++|.|++||||||+.+.|+..
T Consensus 12 ~~iIgltG~~GSGKSTva~~L~~~ 35 (192)
T 2grj_A 12 HMVIGVTGKIGTGKSTVCEILKNK 35 (192)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHh
Confidence 357999999999999999999854
No 363
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=94.71 E-value=0.015 Score=53.23 Aligned_cols=23 Identities=30% Similarity=0.436 Sum_probs=20.6
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 007554 84 LTALMGPSGSGKSTLLDALSSRL 106 (599)
Q Consensus 84 ~~aI~G~sGsGKSTLl~~L~G~~ 106 (599)
-++|+|++|+|||||++.+.+..
T Consensus 14 ki~v~G~~~~GKSsli~~l~~~~ 36 (181)
T 2efe_B 14 KLVLLGDVGAGKSSLVLRFVKDQ 36 (181)
T ss_dssp EEEEECCTTSCHHHHHHHHHHCC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 48999999999999999998754
No 364
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=94.69 E-value=0.016 Score=59.03 Aligned_cols=23 Identities=39% Similarity=0.540 Sum_probs=21.2
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 007554 84 LTALMGPSGSGKSTLLDALSSRL 106 (599)
Q Consensus 84 ~~aI~G~sGsGKSTLl~~L~G~~ 106 (599)
.++|+|.+|+|||||+|.|.|..
T Consensus 9 ~V~ivG~~nvGKSTLln~l~g~~ 31 (301)
T 1wf3_A 9 FVAIVGKPNVGKSTLLNNLLGVK 31 (301)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCc
Confidence 59999999999999999999863
No 365
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=94.69 E-value=0.016 Score=57.10 Aligned_cols=24 Identities=29% Similarity=0.393 Sum_probs=21.4
Q ss_pred eEEEEECCCCCcHHHHHHHHHcCC
Q 007554 83 TLTALMGPSGSGKSTLLDALSSRL 106 (599)
Q Consensus 83 e~~aI~G~sGsGKSTLl~~L~G~~ 106 (599)
-+++|.|++||||||+.+.|+..+
T Consensus 23 ~iI~I~G~~GSGKST~a~~L~~~l 46 (252)
T 1uj2_A 23 FLIGVSGGTASGKSSVCAKIVQLL 46 (252)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHT
T ss_pred EEEEEECCCCCCHHHHHHHHHHHh
Confidence 479999999999999999998744
No 366
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=94.67 E-value=0.0088 Score=54.95 Aligned_cols=23 Identities=30% Similarity=0.459 Sum_probs=20.1
Q ss_pred CeEEEEECCCCCcHHHHHHHHHc
Q 007554 82 GTLTALMGPSGSGKSTLLDALSS 104 (599)
Q Consensus 82 Ge~~aI~G~sGsGKSTLl~~L~G 104 (599)
.-.++|+|++|+|||||++.+.+
T Consensus 18 ~~~i~v~G~~~~GKssli~~l~~ 40 (183)
T 1moz_A 18 ELRILILGLDGAGKTTILYRLQI 40 (183)
T ss_dssp CEEEEEEEETTSSHHHHHHHTCC
T ss_pred ccEEEEECCCCCCHHHHHHHHhc
Confidence 34689999999999999999864
No 367
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Probab=94.65 E-value=0.012 Score=58.77 Aligned_cols=23 Identities=39% Similarity=0.471 Sum_probs=20.4
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 007554 84 LTALMGPSGSGKSTLLDALSSRL 106 (599)
Q Consensus 84 ~~aI~G~sGsGKSTLl~~L~G~~ 106 (599)
-++|+|++|+|||||+|.|.|..
T Consensus 10 ~I~vvG~~g~GKSTLin~L~~~~ 32 (274)
T 3t5d_A 10 TLMVVGESGLGKSTLINSLFLTD 32 (274)
T ss_dssp EEEEEECTTSSHHHHHHHHSSSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 38999999999999999998753
No 368
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=94.61 E-value=0.016 Score=54.36 Aligned_cols=23 Identities=26% Similarity=0.309 Sum_probs=20.4
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 007554 84 LTALMGPSGSGKSTLLDALSSRL 106 (599)
Q Consensus 84 ~~aI~G~sGsGKSTLl~~L~G~~ 106 (599)
-++|+|++|+|||||++.+.+..
T Consensus 16 ki~v~G~~~~GKSsli~~l~~~~ 38 (206)
T 2bov_A 16 KVIMVGSGGVGKSALTLQFMYDE 38 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHhCC
Confidence 48999999999999999998653
No 369
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=94.60 E-value=0.015 Score=55.22 Aligned_cols=23 Identities=35% Similarity=0.577 Sum_probs=20.9
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 007554 84 LTALMGPSGSGKSTLLDALSSRL 106 (599)
Q Consensus 84 ~~aI~G~sGsGKSTLl~~L~G~~ 106 (599)
.++|+|++|+|||||++.|.+..
T Consensus 14 ~i~~~G~~g~GKTsl~~~l~~~~ 36 (218)
T 1nrj_B 14 SIIIAGPQNSGKTSLLTLLTTDS 36 (218)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 58999999999999999998764
No 370
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=94.57 E-value=0.016 Score=54.35 Aligned_cols=23 Identities=26% Similarity=0.559 Sum_probs=20.7
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 007554 84 LTALMGPSGSGKSTLLDALSSRL 106 (599)
Q Consensus 84 ~~aI~G~sGsGKSTLl~~L~G~~ 106 (599)
-++|+|++|+|||||++.+.+..
T Consensus 10 ki~v~G~~~~GKSsli~~l~~~~ 32 (207)
T 1vg8_A 10 KVIILGDSGVGKTSLMNQYVNKK 32 (207)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 48999999999999999998764
No 371
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=94.57 E-value=0.023 Score=58.77 Aligned_cols=26 Identities=38% Similarity=0.574 Sum_probs=23.4
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHcCC
Q 007554 81 PGTLTALMGPSGSGKSTLLDALSSRL 106 (599)
Q Consensus 81 ~Ge~~aI~G~sGsGKSTLl~~L~G~~ 106 (599)
++.+++|+||+|||||||...|+..+
T Consensus 39 ~~~lIvI~GPTgsGKTtLa~~LA~~l 64 (339)
T 3a8t_A 39 KEKLLVLMGATGTGKSRLSIDLAAHF 64 (339)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHTTS
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHC
Confidence 56799999999999999999999764
No 372
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=94.57 E-value=0.016 Score=53.72 Aligned_cols=23 Identities=26% Similarity=0.322 Sum_probs=20.6
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 007554 84 LTALMGPSGSGKSTLLDALSSRL 106 (599)
Q Consensus 84 ~~aI~G~sGsGKSTLl~~L~G~~ 106 (599)
-++|+|++|+|||||++.+.+..
T Consensus 24 ki~vvG~~~~GKSsli~~l~~~~ 46 (189)
T 2gf9_A 24 KLLLIGNSSVGKTSFLFRYADDS 46 (189)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 48999999999999999998754
No 373
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=94.56 E-value=0.014 Score=53.61 Aligned_cols=23 Identities=30% Similarity=0.499 Sum_probs=20.6
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 007554 84 LTALMGPSGSGKSTLLDALSSRL 106 (599)
Q Consensus 84 ~~aI~G~sGsGKSTLl~~L~G~~ 106 (599)
-++|+|++|+|||||++.+.+..
T Consensus 12 ki~v~G~~~~GKSsli~~l~~~~ 34 (186)
T 2bme_A 12 KFLVIGNAGTGKSCLLHQFIEKK 34 (186)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 47999999999999999998754
No 374
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=94.55 E-value=0.015 Score=57.68 Aligned_cols=23 Identities=35% Similarity=0.548 Sum_probs=21.0
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 007554 84 LTALMGPSGSGKSTLLDALSSRL 106 (599)
Q Consensus 84 ~~aI~G~sGsGKSTLl~~L~G~~ 106 (599)
.++|+|.+|||||||+|.|.|..
T Consensus 3 kI~lvG~~n~GKSTL~n~L~g~~ 25 (256)
T 3iby_A 3 HALLIGNPNCGKTTLFNALTNAN 25 (256)
T ss_dssp EEEEEESTTSSHHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
Confidence 47999999999999999999863
No 375
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=94.55 E-value=0.021 Score=52.37 Aligned_cols=26 Identities=27% Similarity=0.613 Sum_probs=22.4
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHcCC
Q 007554 81 PGTLTALMGPSGSGKSTLLDALSSRL 106 (599)
Q Consensus 81 ~Ge~~aI~G~sGsGKSTLl~~L~G~~ 106 (599)
.+..+.|.||+|+|||||++.++..+
T Consensus 42 ~~~~~ll~G~~G~GKT~l~~~~~~~~ 67 (195)
T 1jbk_A 42 TKNNPVLIGEPGVGKTAIVEGLAQRI 67 (195)
T ss_dssp SSCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCceEEECCCCCCHHHHHHHHHHHH
Confidence 35678999999999999999998754
No 376
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=94.54 E-value=0.016 Score=53.39 Aligned_cols=26 Identities=19% Similarity=0.317 Sum_probs=22.1
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHcCC
Q 007554 81 PGTLTALMGPSGSGKSTLLDALSSRL 106 (599)
Q Consensus 81 ~Ge~~aI~G~sGsGKSTLl~~L~G~~ 106 (599)
+.--++|+|++|+|||||++.+.+..
T Consensus 17 ~~~~i~v~G~~~~GKssl~~~l~~~~ 42 (186)
T 1ksh_A 17 RELRLLMLGLDNAGKTTILKKFNGED 42 (186)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHTTCC
T ss_pred CeeEEEEECCCCCCHHHHHHHHhcCC
Confidence 34468999999999999999998754
No 377
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=94.53 E-value=0.013 Score=55.16 Aligned_cols=22 Identities=41% Similarity=0.536 Sum_probs=19.9
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q 007554 84 LTALMGPSGSGKSTLLDALSSR 105 (599)
Q Consensus 84 ~~aI~G~sGsGKSTLl~~L~G~ 105 (599)
.++|+|++|+|||||++.+.|.
T Consensus 25 ki~vvG~~~vGKSsLi~~l~~~ 46 (195)
T 3cbq_A 25 KVMLVGESGVGKSTLAGTFGGL 46 (195)
T ss_dssp EEEEECSTTSSHHHHHHHTCCE
T ss_pred EEEEECCCCCCHHHHHHHHHhc
Confidence 5899999999999999999764
No 378
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=94.52 E-value=0.017 Score=53.63 Aligned_cols=23 Identities=39% Similarity=0.472 Sum_probs=20.6
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 007554 84 LTALMGPSGSGKSTLLDALSSRL 106 (599)
Q Consensus 84 ~~aI~G~sGsGKSTLl~~L~G~~ 106 (599)
-++|+|++|+|||||++.+.+..
T Consensus 18 ki~v~G~~~~GKSsli~~l~~~~ 40 (196)
T 3tkl_A 18 KLLLIGDSGVGKSCLLLRFADDT 40 (196)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 48999999999999999998754
No 379
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=94.50 E-value=0.0099 Score=60.25 Aligned_cols=26 Identities=23% Similarity=0.436 Sum_probs=19.4
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHcCC
Q 007554 81 PGTLTALMGPSGSGKSTLLDALSSRL 106 (599)
Q Consensus 81 ~Ge~~aI~G~sGsGKSTLl~~L~G~~ 106 (599)
++-+++|.||+||||||+.+.|+..+
T Consensus 4 ~~~iIgItG~sGSGKSTva~~L~~~l 29 (290)
T 1a7j_A 4 KHPIISVTGSSGAGTSTVKHTFDQIF 29 (290)
T ss_dssp TSCEEEEESCC---CCTHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHH
Confidence 35689999999999999999998643
No 380
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=94.49 E-value=0.017 Score=52.96 Aligned_cols=23 Identities=26% Similarity=0.410 Sum_probs=20.4
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 007554 84 LTALMGPSGSGKSTLLDALSSRL 106 (599)
Q Consensus 84 ~~aI~G~sGsGKSTLl~~L~G~~ 106 (599)
-++|+|++|+|||||++.+.+..
T Consensus 20 ki~v~G~~~~GKSsl~~~l~~~~ 42 (183)
T 3kkq_A 20 KLVVVGDGGVGKSALTIQFFQKI 42 (183)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHhCC
Confidence 47899999999999999998753
No 381
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=94.46 E-value=0.016 Score=53.95 Aligned_cols=22 Identities=27% Similarity=0.440 Sum_probs=20.2
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q 007554 84 LTALMGPSGSGKSTLLDALSSR 105 (599)
Q Consensus 84 ~~aI~G~sGsGKSTLl~~L~G~ 105 (599)
-++|+|++|+|||||++.+.+.
T Consensus 10 ki~vvG~~~~GKSsli~~l~~~ 31 (199)
T 2gf0_A 10 RVVVFGAGGVGKSSLVLRFVKG 31 (199)
T ss_dssp EEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCcHHHHHHHHHcC
Confidence 5899999999999999999874
No 382
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=94.46 E-value=0.22 Score=62.43 Aligned_cols=149 Identities=16% Similarity=0.167 Sum_probs=84.4
Q ss_pred eeeceEE--EEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCcCeEEEEcCCCCCCCCCCHHHH
Q 007554 71 VLEGLTG--YAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLSFGTAAYVTQDDNLIGTLTVRET 148 (599)
Q Consensus 71 iL~~vs~--~i~~Ge~~aI~G~sGsGKSTLl~~L~G~~~~~~~~~G~I~~~g~~~~~~~~~~~yv~Q~~~l~~~lTV~e~ 148 (599)
-|+.+-+ =+++|+++.|.||+|+|||||.-.++..... .| ..+.|+.-+...-+ ++
T Consensus 370 ~LD~lLG~GGl~~G~lilI~G~pGsGKTtLaLqia~~~a~----~G-------------~~vlyis~E~s~~~---~~-- 427 (2050)
T 3cmu_A 370 SLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQR----EG-------------KTCAFIDAEHALDP---IY-- 427 (2050)
T ss_dssp HHHHHHSSSSEETTSEEEEECCTTSSHHHHHHHHHHHHHT----TT-------------CCEEEECTTSCCCH---HH--
T ss_pred HHHHHhccCCccCCcEEEEEeCCCCCHHHHHHHHHHHHHh----cC-------------CeEEEEEcCCCHHH---HH--
Confidence 4555542 5899999999999999999998777643221 11 22445544332110 10
Q ss_pred HHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHHHHHHHHHh--hCCCEEEEeCCCCCCC
Q 007554 149 ISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEIL--MRPRLLFLDEPTSGLD 226 (599)
Q Consensus 149 l~~~~~~~~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSGGerqRv~ia~aL~--~~p~illlDEPtsgLD 226 (599)
+.+ +|+.. .+-.+-+ .-+.. +-+.+++.++ .+|+++++|.-++=..
T Consensus 428 ---a~~----------------------lGvd~-~~L~I~~----~~~~e--~il~~~~~lv~~~~~~lIVIDSL~al~~ 475 (2050)
T 3cmu_A 428 ---ARK----------------------LGVDI-DNLLCSQ----PDTGE--QALEICDALARSGAVDVIVVDSVAALTP 475 (2050)
T ss_dssp ---HHH----------------------TTCCT-TTCEEEC----CSSHH--HHHHHHHHHHHHTCCSEEEESCGGGCCC
T ss_pred ---HHH----------------------cCCCH-HHeEEeC----CCCHH--HHHHHHHHHHHhcCCcEEEECCHHHhhc
Confidence 111 12110 0001111 12332 3456666665 4799999999876552
Q ss_pred -H------------HHHHHHHHHHHHH---Hh-CCCEEEEEecCCch---------------HHHhccCeEEEEeCCeE
Q 007554 227 -S------------AAAFFVTQTLRCL---SR-DGRTVIASIHQPSS---------------EVFELFDRLYLLSGGKT 273 (599)
Q Consensus 227 -~------------~~~~~i~~~L~~l---~~-~g~tvi~~~H~p~~---------------~i~~~~D~v~~L~~G~i 273 (599)
+ ..++.+.+.|++| ++ .|.+||++.|--.. .+...+|-++.|+..+.
T Consensus 476 ~~e~eg~~Gd~~~~~q~R~is~~Lr~L~~lake~~i~VIlinQl~~~vg~~~g~p~~psGg~ale~~ADv~l~L~R~~~ 554 (2050)
T 3cmu_A 476 KAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGA 554 (2050)
T ss_dssp HHHHHSCTTCCCTTHHHHHHHHHHHHHHHHHHTTTCEEEEEECCEECTTCCSSCCEECSSHHHHHHHEEEEEEEEEEEE
T ss_pred ccccccccccchhhHHHHHHHHHHHHHHHHHHHcCCeEEEEeecccccccccCCCcCCCCcchhhhhCCEEEEEEeccc
Confidence 1 1234455666666 44 58899998874211 25567888888875543
No 383
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=94.45 E-value=0.019 Score=53.78 Aligned_cols=23 Identities=22% Similarity=0.314 Sum_probs=20.6
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 007554 84 LTALMGPSGSGKSTLLDALSSRL 106 (599)
Q Consensus 84 ~~aI~G~sGsGKSTLl~~L~G~~ 106 (599)
-++|+|++|+|||||++.+.+..
T Consensus 10 ki~v~G~~~~GKSsli~~l~~~~ 32 (203)
T 1zbd_A 10 KILIIGNSSVGKTSFLFRYADDS 32 (203)
T ss_dssp EEEEECSTTSSHHHHHHHHHTCC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 47999999999999999998754
No 384
>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A
Probab=94.45 E-value=0.016 Score=60.69 Aligned_cols=21 Identities=38% Similarity=0.616 Sum_probs=19.9
Q ss_pred EEEECCCCCcHHHHHHHHHcC
Q 007554 85 TALMGPSGSGKSTLLDALSSR 105 (599)
Q Consensus 85 ~aI~G~sGsGKSTLl~~L~G~ 105 (599)
++|+|++|+|||||+|.|+|.
T Consensus 4 v~IVG~pnvGKSTL~n~L~~~ 24 (368)
T 2dby_A 4 VGIVGLPNVGKSTLFNALTRA 24 (368)
T ss_dssp EEEECCSSSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHhCC
Confidence 789999999999999999985
No 385
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=94.44 E-value=0.017 Score=56.94 Aligned_cols=23 Identities=26% Similarity=0.429 Sum_probs=21.0
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 007554 84 LTALMGPSGSGKSTLLDALSSRL 106 (599)
Q Consensus 84 ~~aI~G~sGsGKSTLl~~L~G~~ 106 (599)
.++|+|++|+|||||++.|.|..
T Consensus 24 ~I~lvG~~g~GKStl~n~l~~~~ 46 (260)
T 2xtp_A 24 RIILVGKTGTGKSAAGNSILRKQ 46 (260)
T ss_dssp EEEEEECTTSCHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58999999999999999999864
No 386
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=94.44 E-value=0.021 Score=55.23 Aligned_cols=22 Identities=32% Similarity=0.551 Sum_probs=19.7
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q 007554 84 LTALMGPSGSGKSTLLDALSSR 105 (599)
Q Consensus 84 ~~aI~G~sGsGKSTLl~~L~G~ 105 (599)
.++|.|++||||||+.+.|+-.
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~~ 23 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKDK 23 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999999999854
No 387
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=94.44 E-value=0.016 Score=54.01 Aligned_cols=23 Identities=26% Similarity=0.457 Sum_probs=20.6
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 007554 84 LTALMGPSGSGKSTLLDALSSRL 106 (599)
Q Consensus 84 ~~aI~G~sGsGKSTLl~~L~G~~ 106 (599)
-++|+|++|+|||||++.+.+..
T Consensus 25 ki~vvG~~~~GKSsli~~l~~~~ 47 (192)
T 2fg5_A 25 KVCLLGDTGVGKSSIVCRFVQDH 47 (192)
T ss_dssp EEEEEECTTSSHHHHHHHHHHCC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 48999999999999999998754
No 388
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=94.43 E-value=0.016 Score=53.56 Aligned_cols=23 Identities=26% Similarity=0.433 Sum_probs=20.4
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 007554 84 LTALMGPSGSGKSTLLDALSSRL 106 (599)
Q Consensus 84 ~~aI~G~sGsGKSTLl~~L~G~~ 106 (599)
-++|+|++|+|||||++.+.+..
T Consensus 9 ki~v~G~~~vGKSsli~~l~~~~ 31 (184)
T 1m7b_A 9 KIVVVGDSQCGKTALLHVFAKDC 31 (184)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 47899999999999999998753
No 389
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=94.42 E-value=0.018 Score=52.71 Aligned_cols=22 Identities=23% Similarity=0.397 Sum_probs=19.8
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q 007554 84 LTALMGPSGSGKSTLLDALSSR 105 (599)
Q Consensus 84 ~~aI~G~sGsGKSTLl~~L~G~ 105 (599)
-++|+|++|+|||||++.+.+.
T Consensus 7 ~i~~~G~~~~GKssl~~~l~~~ 28 (186)
T 1mh1_A 7 KCVVVGDGAVGKTCLLISYTTN 28 (186)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4799999999999999999864
No 390
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=94.42 E-value=0.021 Score=57.63 Aligned_cols=27 Identities=30% Similarity=0.474 Sum_probs=23.7
Q ss_pred CeEEEEECCCCCcHHHHHHHHHcCCCC
Q 007554 82 GTLTALMGPSGSGKSTLLDALSSRLAS 108 (599)
Q Consensus 82 Ge~~aI~G~sGsGKSTLl~~L~G~~~~ 108 (599)
...+.|.||+|+|||||.++|++....
T Consensus 47 ~~~~ll~G~~GtGKt~la~~la~~~~~ 73 (311)
T 4fcw_A 47 IGSFLFLGPTGVGKTELAKTLAATLFD 73 (311)
T ss_dssp SEEEEEESCSSSSHHHHHHHHHHHHHS
T ss_pred ceEEEEECCCCcCHHHHHHHHHHHHcC
Confidence 468999999999999999999987644
No 391
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=94.41 E-value=0.019 Score=53.26 Aligned_cols=22 Identities=23% Similarity=0.314 Sum_probs=19.9
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q 007554 84 LTALMGPSGSGKSTLLDALSSR 105 (599)
Q Consensus 84 ~~aI~G~sGsGKSTLl~~L~G~ 105 (599)
-++|+|++|+|||||++.+.+.
T Consensus 22 ki~v~G~~~~GKSsli~~l~~~ 43 (189)
T 1z06_A 22 KIIVIGDSNVGKTCLTYRFCAG 43 (189)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4899999999999999999864
No 392
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=94.35 E-value=0.019 Score=53.80 Aligned_cols=22 Identities=36% Similarity=0.554 Sum_probs=20.0
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q 007554 84 LTALMGPSGSGKSTLLDALSSR 105 (599)
Q Consensus 84 ~~aI~G~sGsGKSTLl~~L~G~ 105 (599)
-++|+|++|+|||||++.+.|.
T Consensus 8 kv~lvG~~~vGKSsL~~~~~~~ 29 (192)
T 2cjw_A 8 RVVLIGEQGVGKSTLANIFAGV 29 (192)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4899999999999999999863
No 393
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=94.35 E-value=0.019 Score=57.77 Aligned_cols=22 Identities=41% Similarity=0.480 Sum_probs=20.3
Q ss_pred CeEEEEECCCCCcHHHHHHHHH
Q 007554 82 GTLTALMGPSGSGKSTLLDALS 103 (599)
Q Consensus 82 Ge~~aI~G~sGsGKSTLl~~L~ 103 (599)
..+++|.|++||||||+.+.|+
T Consensus 75 ~~iI~I~G~~GSGKSTva~~La 96 (281)
T 2f6r_A 75 LYVLGLTGISGSGKSSVAQRLK 96 (281)
T ss_dssp CEEEEEEECTTSCHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHH
Confidence 3579999999999999999998
No 394
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Probab=94.34 E-value=0.021 Score=56.75 Aligned_cols=23 Identities=35% Similarity=0.492 Sum_probs=20.8
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 007554 84 LTALMGPSGSGKSTLLDALSSRL 106 (599)
Q Consensus 84 ~~aI~G~sGsGKSTLl~~L~G~~ 106 (599)
.++|+|++|+|||||++.|+|..
T Consensus 7 kI~lvG~~nvGKTsL~n~l~g~~ 29 (258)
T 3a1s_A 7 KVALAGCPNVGKTSLFNALTGTK 29 (258)
T ss_dssp EEEEECCTTSSHHHHHHHHHTTC
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
Confidence 48999999999999999999853
No 395
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=94.34 E-value=0.018 Score=53.76 Aligned_cols=22 Identities=23% Similarity=0.617 Sum_probs=19.4
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q 007554 84 LTALMGPSGSGKSTLLDALSSR 105 (599)
Q Consensus 84 ~~aI~G~sGsGKSTLl~~L~G~ 105 (599)
-++|+|++|+|||||++.|.+.
T Consensus 28 ki~vvG~~~~GKSsLi~~l~~~ 49 (192)
T 2il1_A 28 QVIIIGSRGVGKTSLMERFTDD 49 (192)
T ss_dssp EEEEECSTTSSHHHHHHHHCC-
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4899999999999999999864
No 396
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=94.31 E-value=0.024 Score=54.89 Aligned_cols=28 Identities=25% Similarity=0.433 Sum_probs=23.7
Q ss_pred EeCCeEEEEECCCCCcHHHHHHHHHcCC
Q 007554 79 AEPGTLTALMGPSGSGKSTLLDALSSRL 106 (599)
Q Consensus 79 i~~Ge~~aI~G~sGsGKSTLl~~L~G~~ 106 (599)
.++..++.|+||+||||+|..+.|+-.+
T Consensus 26 ~~k~kiI~llGpPGsGKgTqa~~L~~~~ 53 (217)
T 3umf_A 26 LAKAKVIFVLGGPGSGKGTQCEKLVQKF 53 (217)
T ss_dssp TTSCEEEEEECCTTCCHHHHHHHHHHHH
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 3456789999999999999999998544
No 397
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=94.31 E-value=0.02 Score=54.94 Aligned_cols=25 Identities=28% Similarity=0.395 Sum_probs=21.8
Q ss_pred CeEEEEECCCCCcHHHHHHHHHcCC
Q 007554 82 GTLTALMGPSGSGKSTLLDALSSRL 106 (599)
Q Consensus 82 Ge~~aI~G~sGsGKSTLl~~L~G~~ 106 (599)
|-.+.|+|++||||||+.+.|+..+
T Consensus 5 ~~~I~l~G~~GsGKsT~a~~La~~l 29 (217)
T 3be4_A 5 KHNLILIGAPGSGKGTQCEFIKKEY 29 (217)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHh
Confidence 5578999999999999999998654
No 398
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=94.30 E-value=0.02 Score=53.20 Aligned_cols=23 Identities=30% Similarity=0.484 Sum_probs=20.5
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 007554 84 LTALMGPSGSGKSTLLDALSSRL 106 (599)
Q Consensus 84 ~~aI~G~sGsGKSTLl~~L~G~~ 106 (599)
-++|+|++|+|||||++.+.+..
T Consensus 23 ki~v~G~~~~GKSsli~~l~~~~ 45 (191)
T 2a5j_A 23 KYIIIGDTGVGKSCLLLQFTDKR 45 (191)
T ss_dssp EEEEESSTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 48999999999999999998753
No 399
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=94.30 E-value=0.019 Score=54.72 Aligned_cols=24 Identities=33% Similarity=0.598 Sum_probs=21.2
Q ss_pred eEEEEECCCCCcHHHHHHHHHcCC
Q 007554 83 TLTALMGPSGSGKSTLLDALSSRL 106 (599)
Q Consensus 83 e~~aI~G~sGsGKSTLl~~L~G~~ 106 (599)
-.++|+|++|+|||||++.|++..
T Consensus 31 ~~i~i~G~~g~GKTTl~~~l~~~~ 54 (221)
T 2wsm_A 31 VAVNIMGAIGSGKTLLIERTIERI 54 (221)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHh
Confidence 478999999999999999998653
No 400
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=94.27 E-value=0.021 Score=52.22 Aligned_cols=22 Identities=27% Similarity=0.361 Sum_probs=20.0
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q 007554 84 LTALMGPSGSGKSTLLDALSSR 105 (599)
Q Consensus 84 ~~aI~G~sGsGKSTLl~~L~G~ 105 (599)
-++|+|++|+|||||++.+.+.
T Consensus 10 ki~v~G~~~~GKssl~~~~~~~ 31 (182)
T 3bwd_D 10 KCVTVGDGAVGKTCLLISYTSN 31 (182)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4899999999999999999864
No 401
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=94.27 E-value=0.018 Score=54.10 Aligned_cols=23 Identities=17% Similarity=0.250 Sum_probs=20.9
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 007554 84 LTALMGPSGSGKSTLLDALSSRL 106 (599)
Q Consensus 84 ~~aI~G~sGsGKSTLl~~L~G~~ 106 (599)
-++|+|++|+|||||++.+.+..
T Consensus 26 ki~vvG~~~~GKSsli~~l~~~~ 48 (201)
T 3oes_A 26 KVVILGYRCVGKTSLAHQFVEGE 48 (201)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCcCHHHHHHHHHhCC
Confidence 58999999999999999999754
No 402
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=94.25 E-value=0.027 Score=54.33 Aligned_cols=28 Identities=46% Similarity=0.659 Sum_probs=24.4
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHHcCCC
Q 007554 80 EPGTLTALMGPSGSGKSTLLDALSSRLA 107 (599)
Q Consensus 80 ~~Ge~~aI~G~sGsGKSTLl~~L~G~~~ 107 (599)
-+|.+++|.|++||||||+.+.|+..+.
T Consensus 4 m~g~~i~~eG~~gsGKsT~~~~l~~~l~ 31 (213)
T 4edh_A 4 MTGLFVTLEGPEGAGKSTNRDYLAERLR 31 (213)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCceEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 3688999999999999999999987654
No 403
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=94.23 E-value=0.021 Score=52.98 Aligned_cols=22 Identities=32% Similarity=0.452 Sum_probs=20.0
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q 007554 84 LTALMGPSGSGKSTLLDALSSR 105 (599)
Q Consensus 84 ~~aI~G~sGsGKSTLl~~L~G~ 105 (599)
-++|+|++|+|||||++.+.+.
T Consensus 24 ki~v~G~~~~GKSsli~~l~~~ 45 (188)
T 1zd9_A 24 ELTLVGLQYSGKTTFVNVIASG 45 (188)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4899999999999999999864
No 404
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=94.23 E-value=0.011 Score=56.36 Aligned_cols=24 Identities=33% Similarity=0.454 Sum_probs=21.5
Q ss_pred eEEEEECCCCCcHHHHHHHHHcCC
Q 007554 83 TLTALMGPSGSGKSTLLDALSSRL 106 (599)
Q Consensus 83 e~~aI~G~sGsGKSTLl~~L~G~~ 106 (599)
-.++|+|++|+|||||++.|.|..
T Consensus 30 ~~i~v~G~~~~GKSslin~l~~~~ 53 (223)
T 4dhe_A 30 PEIAFAGRSNAGKSTAINVLCNQK 53 (223)
T ss_dssp CEEEEEESCHHHHHHHHHHHTTCS
T ss_pred CEEEEEcCCCCCHHHHHHHHhCCC
Confidence 368999999999999999999864
No 405
>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*
Probab=94.22 E-value=0.02 Score=58.02 Aligned_cols=23 Identities=30% Similarity=0.518 Sum_probs=21.5
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 007554 84 LTALMGPSGSGKSTLLDALSSRL 106 (599)
Q Consensus 84 ~~aI~G~sGsGKSTLl~~L~G~~ 106 (599)
.++|+|++|+|||||++.|.|..
T Consensus 26 ~I~vvG~~~~GKSTlln~l~g~~ 48 (315)
T 1jwy_B 26 QIVVVGSQSSGKSSVLENIVGRD 48 (315)
T ss_dssp EEEEEECSSSSHHHHHHHHHTSC
T ss_pred eEEEEcCCCCCHHHHHHHHHCCC
Confidence 69999999999999999999974
No 406
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=94.22 E-value=0.021 Score=53.78 Aligned_cols=22 Identities=32% Similarity=0.537 Sum_probs=19.5
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q 007554 84 LTALMGPSGSGKSTLLDALSSR 105 (599)
Q Consensus 84 ~~aI~G~sGsGKSTLl~~L~G~ 105 (599)
-++|+|++|+|||||++.+.+.
T Consensus 27 ki~v~G~~~~GKSsLi~~l~~~ 48 (200)
T 2o52_A 27 KFLVIGSAGTGKSCLLHQFIEN 48 (200)
T ss_dssp EEEEEESTTSSHHHHHHHHHC-
T ss_pred EEEEECcCCCCHHHHHHHHHhC
Confidence 4899999999999999999864
No 407
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=94.21 E-value=0.019 Score=53.40 Aligned_cols=23 Identities=22% Similarity=0.316 Sum_probs=20.5
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 007554 84 LTALMGPSGSGKSTLLDALSSRL 106 (599)
Q Consensus 84 ~~aI~G~sGsGKSTLl~~L~G~~ 106 (599)
-++|+|++|+|||||++.+.+..
T Consensus 25 ki~v~G~~~~GKSsli~~l~~~~ 47 (191)
T 3dz8_A 25 KLLIIGNSSVGKTSFLFRYADDT 47 (191)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHT
T ss_pred EEEEECCCCcCHHHHHHHHhcCC
Confidence 47999999999999999998754
No 408
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=94.21 E-value=0.022 Score=53.23 Aligned_cols=22 Identities=32% Similarity=0.528 Sum_probs=20.2
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q 007554 84 LTALMGPSGSGKSTLLDALSSR 105 (599)
Q Consensus 84 ~~aI~G~sGsGKSTLl~~L~G~ 105 (599)
-++|+|++|+|||||++.+.+.
T Consensus 30 ki~v~G~~~vGKSsli~~l~~~ 51 (196)
T 2atv_A 30 KLAIFGRAGVGKSALVVRFLTK 51 (196)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 5899999999999999999875
No 409
>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*
Probab=94.21 E-value=0.02 Score=57.30 Aligned_cols=23 Identities=35% Similarity=0.567 Sum_probs=20.9
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 007554 84 LTALMGPSGSGKSTLLDALSSRL 106 (599)
Q Consensus 84 ~~aI~G~sGsGKSTLl~~L~G~~ 106 (599)
.++|+|.+|||||||+|.|.|..
T Consensus 5 ~I~lvG~~n~GKSTLin~l~g~~ 27 (274)
T 3i8s_A 5 TIGLIGNPNSGKTTLFNQLTGSR 27 (274)
T ss_dssp EEEEEECTTSSHHHHHHHHHTTC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58999999999999999999863
No 410
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=94.21 E-value=0.019 Score=52.57 Aligned_cols=22 Identities=27% Similarity=0.311 Sum_probs=19.8
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q 007554 84 LTALMGPSGSGKSTLLDALSSR 105 (599)
Q Consensus 84 ~~aI~G~sGsGKSTLl~~L~G~ 105 (599)
.++|+|++|+|||||++.+.+.
T Consensus 8 ki~~~G~~~~GKSsli~~l~~~ 29 (181)
T 3t5g_A 8 KIAILGYRSVGKSSLTIQFVEG 29 (181)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 4789999999999999999854
No 411
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=94.21 E-value=0.021 Score=52.84 Aligned_cols=23 Identities=26% Similarity=0.410 Sum_probs=20.4
Q ss_pred eEEEEECCCCCcHHHHHHHHHcC
Q 007554 83 TLTALMGPSGSGKSTLLDALSSR 105 (599)
Q Consensus 83 e~~aI~G~sGsGKSTLl~~L~G~ 105 (599)
-.++|+|++|+|||||++.+.+.
T Consensus 17 ~~i~v~G~~~~GKssl~~~l~~~ 39 (187)
T 1zj6_A 17 HKVIIVGLDNAGKTTILYQFSMN 39 (187)
T ss_dssp EEEEEEESTTSSHHHHHHHHHTT
T ss_pred cEEEEECCCCCCHHHHHHHHhcC
Confidence 35899999999999999999864
No 412
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=94.21 E-value=0.022 Score=52.74 Aligned_cols=23 Identities=35% Similarity=0.502 Sum_probs=20.7
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 007554 84 LTALMGPSGSGKSTLLDALSSRL 106 (599)
Q Consensus 84 ~~aI~G~sGsGKSTLl~~L~G~~ 106 (599)
-++|+|++|+|||||++.+.+..
T Consensus 17 ~i~v~G~~~~GKssli~~l~~~~ 39 (195)
T 1x3s_A 17 KILIIGESGVGKSSLLLRFTDDT 39 (195)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 48999999999999999998754
No 413
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=94.19 E-value=0.021 Score=54.99 Aligned_cols=23 Identities=26% Similarity=0.430 Sum_probs=20.6
Q ss_pred eEEEEECCCCCcHHHHHHHHHcC
Q 007554 83 TLTALMGPSGSGKSTLLDALSSR 105 (599)
Q Consensus 83 e~~aI~G~sGsGKSTLl~~L~G~ 105 (599)
-.++|+|++|+|||||++.+.+.
T Consensus 30 ~kI~vvG~~~vGKSsLin~l~~~ 52 (228)
T 2qu8_A 30 KTIILSGAPNVGKSSFMNIVSRA 52 (228)
T ss_dssp EEEEEECSTTSSHHHHHHHHTTT
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 36899999999999999999864
No 414
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=94.18 E-value=0.022 Score=53.72 Aligned_cols=24 Identities=38% Similarity=0.425 Sum_probs=21.0
Q ss_pred eEEEEECCCCCcHHHHHHHHHcCC
Q 007554 83 TLTALMGPSGSGKSTLLDALSSRL 106 (599)
Q Consensus 83 e~~aI~G~sGsGKSTLl~~L~G~~ 106 (599)
=-++|+|++|+|||||++.+.+..
T Consensus 21 ~~i~v~G~~~~GKSsli~~l~~~~ 44 (213)
T 3cph_A 21 MKILLIGDSGVGKSCLLVRFVEDK 44 (213)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHCC
T ss_pred eEEEEECCCCCCHHHHHHHHHhCC
Confidence 358999999999999999998653
No 415
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=94.17 E-value=0.022 Score=53.02 Aligned_cols=23 Identities=30% Similarity=0.354 Sum_probs=20.7
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 007554 84 LTALMGPSGSGKSTLLDALSSRL 106 (599)
Q Consensus 84 ~~aI~G~sGsGKSTLl~~L~G~~ 106 (599)
-++|+|++|+|||||++.+.+..
T Consensus 25 ki~~vG~~~~GKSsl~~~l~~~~ 47 (194)
T 3reg_A 25 KIVVVGDGAVGKTCLLLAFSKGE 47 (194)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 48999999999999999998754
No 416
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=94.17 E-value=0.021 Score=55.78 Aligned_cols=29 Identities=31% Similarity=0.502 Sum_probs=22.0
Q ss_pred EeCCeEEEEECCCCCcHHHHHHHHHcCCC
Q 007554 79 AEPGTLTALMGPSGSGKSTLLDALSSRLA 107 (599)
Q Consensus 79 i~~Ge~~aI~G~sGsGKSTLl~~L~G~~~ 107 (599)
..+|.++.|.|++||||||+.+.|+..+.
T Consensus 22 m~~g~~I~~eG~~GsGKsT~~~~l~~~l~ 50 (227)
T 3v9p_A 22 MARGKFITFEGIDGAGKTTHLQWFCDRLQ 50 (227)
T ss_dssp -CCCCEEEEECCC---CHHHHHHHHHHHH
T ss_pred ccCCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 35789999999999999999999987653
No 417
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=94.17 E-value=0.019 Score=53.97 Aligned_cols=23 Identities=43% Similarity=0.485 Sum_probs=20.6
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 007554 84 LTALMGPSGSGKSTLLDALSSRL 106 (599)
Q Consensus 84 ~~aI~G~sGsGKSTLl~~L~G~~ 106 (599)
-++|+|++|+|||||++.+.+..
T Consensus 10 ki~v~G~~~~GKSsli~~l~~~~ 32 (206)
T 2bcg_Y 10 KLLLIGNSGVGKSCLLLRFSDDT 32 (206)
T ss_dssp EEEEEESTTSSHHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 48999999999999999998754
No 418
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=94.17 E-value=0.026 Score=56.86 Aligned_cols=22 Identities=32% Similarity=0.434 Sum_probs=20.3
Q ss_pred eEEEEECCCCCcHHHHHHHHHc
Q 007554 83 TLTALMGPSGSGKSTLLDALSS 104 (599)
Q Consensus 83 e~~aI~G~sGsGKSTLl~~L~G 104 (599)
.++.|+|++||||||+.+.|+.
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~ 24 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIA 24 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4789999999999999999985
No 419
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=94.16 E-value=0.022 Score=53.35 Aligned_cols=24 Identities=29% Similarity=0.320 Sum_probs=21.1
Q ss_pred eEEEEECCCCCcHHHHHHHHHcCC
Q 007554 83 TLTALMGPSGSGKSTLLDALSSRL 106 (599)
Q Consensus 83 e~~aI~G~sGsGKSTLl~~L~G~~ 106 (599)
=-++|+|++|+|||||++.+.+..
T Consensus 29 ~ki~v~G~~~~GKSsli~~l~~~~ 52 (199)
T 2p5s_A 29 YKIVLAGDAAVGKSSFLMRLCKNE 52 (199)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHCC
T ss_pred eEEEEECcCCCCHHHHHHHHHhCC
Confidence 358999999999999999998753
No 420
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=94.15 E-value=0.025 Score=53.70 Aligned_cols=23 Identities=30% Similarity=0.397 Sum_probs=20.6
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 007554 84 LTALMGPSGSGKSTLLDALSSRL 106 (599)
Q Consensus 84 ~~aI~G~sGsGKSTLl~~L~G~~ 106 (599)
-++|+|++|+|||||++.+.+..
T Consensus 27 ki~vvG~~~~GKSsLi~~l~~~~ 49 (217)
T 2f7s_A 27 KLLALGDSGVGKTTFLYRYTDNK 49 (217)
T ss_dssp EEEEESCTTSSHHHHHHHHHCSC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 47999999999999999998753
No 421
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=94.15 E-value=0.022 Score=53.03 Aligned_cols=24 Identities=21% Similarity=0.390 Sum_probs=20.9
Q ss_pred eEEEEECCCCCcHHHHHHHHHcCC
Q 007554 83 TLTALMGPSGSGKSTLLDALSSRL 106 (599)
Q Consensus 83 e~~aI~G~sGsGKSTLl~~L~G~~ 106 (599)
-.++|+|++|+|||||++.+.+..
T Consensus 18 ~ki~v~G~~~~GKSsl~~~l~~~~ 41 (199)
T 4bas_A 18 LQVVMCGLDNSGKTTIINQVKPAQ 41 (199)
T ss_dssp EEEEEECCTTSCHHHHHHHHSCCC
T ss_pred cEEEEECCCCCCHHHHHHHHhcCC
Confidence 358999999999999999998753
No 422
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=94.14 E-value=0.016 Score=53.75 Aligned_cols=23 Identities=26% Similarity=0.408 Sum_probs=20.7
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 007554 84 LTALMGPSGSGKSTLLDALSSRL 106 (599)
Q Consensus 84 ~~aI~G~sGsGKSTLl~~L~G~~ 106 (599)
-++|+|++|+|||||++.+.+..
T Consensus 23 ki~v~G~~~~GKSsli~~l~~~~ 45 (190)
T 2h57_A 23 HVLCLGLDNSGKTTIINKLKPSN 45 (190)
T ss_dssp EEEEEECTTSSHHHHHHHTSCGG
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 58999999999999999998764
No 423
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=94.13 E-value=0.03 Score=57.26 Aligned_cols=25 Identities=36% Similarity=0.582 Sum_probs=22.2
Q ss_pred CeEEEEECCCCCcHHHHHHHHHcCC
Q 007554 82 GTLTALMGPSGSGKSTLLDALSSRL 106 (599)
Q Consensus 82 Ge~~aI~G~sGsGKSTLl~~L~G~~ 106 (599)
+.+++|+||+|||||||...|+...
T Consensus 3 ~~~i~i~GptgsGKt~la~~La~~~ 27 (322)
T 3exa_A 3 EKLVAIVGPTAVGKTKTSVMLAKRL 27 (322)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHTT
T ss_pred CcEEEEECCCcCCHHHHHHHHHHhC
Confidence 4689999999999999999998654
No 424
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=94.11 E-value=0.019 Score=52.84 Aligned_cols=22 Identities=27% Similarity=0.433 Sum_probs=20.1
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q 007554 84 LTALMGPSGSGKSTLLDALSSR 105 (599)
Q Consensus 84 ~~aI~G~sGsGKSTLl~~L~G~ 105 (599)
-++|+|++|+|||||++.+.+.
T Consensus 23 ~i~v~G~~~~GKSsli~~l~~~ 44 (181)
T 2h17_A 23 KVIIVGLDNAGKTTILYQFSMN 44 (181)
T ss_dssp EEEEEEETTSSHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4799999999999999999875
No 425
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=94.11 E-value=0.023 Score=54.25 Aligned_cols=23 Identities=22% Similarity=0.307 Sum_probs=19.9
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 007554 84 LTALMGPSGSGKSTLLDALSSRL 106 (599)
Q Consensus 84 ~~aI~G~sGsGKSTLl~~L~G~~ 106 (599)
.++|.|++||||||+.+.|+..+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIMEKY 24 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 37899999999999999998643
No 426
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=94.08 E-value=0.021 Score=54.14 Aligned_cols=23 Identities=30% Similarity=0.561 Sum_probs=20.2
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 007554 84 LTALMGPSGSGKSTLLDALSSRL 106 (599)
Q Consensus 84 ~~aI~G~sGsGKSTLl~~L~G~~ 106 (599)
-++|+|++|+|||||++.+.+..
T Consensus 28 ki~lvG~~~vGKSsLi~~l~~~~ 50 (201)
T 2ew1_A 28 KIVLIGNAGVGKTCLVRRFTQGL 50 (201)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSS
T ss_pred EEEEECcCCCCHHHHHHHHHhCC
Confidence 48999999999999999988653
No 427
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=94.05 E-value=0.029 Score=54.41 Aligned_cols=26 Identities=35% Similarity=0.640 Sum_probs=22.3
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHcCC
Q 007554 81 PGTLTALMGPSGSGKSTLLDALSSRL 106 (599)
Q Consensus 81 ~Ge~~aI~G~sGsGKSTLl~~L~G~~ 106 (599)
.+..+.|+|++||||||+.+.|+..+
T Consensus 15 ~~~~I~l~G~~GsGKsT~a~~La~~l 40 (233)
T 1ak2_A 15 KGVRAVLLGPPGAGKGTQAPKLAKNF 40 (233)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 34679999999999999999998653
No 428
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=94.04 E-value=0.025 Score=52.91 Aligned_cols=24 Identities=29% Similarity=0.422 Sum_probs=21.3
Q ss_pred EEEEECCCCCcHHHHHHHHHcCCC
Q 007554 84 LTALMGPSGSGKSTLLDALSSRLA 107 (599)
Q Consensus 84 ~~aI~G~sGsGKSTLl~~L~G~~~ 107 (599)
-++|+|++|+|||||++.+.+...
T Consensus 22 ki~~vG~~~vGKTsLi~~l~~~~~ 45 (196)
T 3llu_A 22 RILLMGLRRSGKSSIQKVVFHKMS 45 (196)
T ss_dssp EEEEEESTTSSHHHHHHHHHSCCC
T ss_pred EEEEECCCCCCHHHHHHHHHhcCC
Confidence 489999999999999999988644
No 429
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=94.04 E-value=0.019 Score=52.44 Aligned_cols=22 Identities=27% Similarity=0.460 Sum_probs=20.0
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q 007554 84 LTALMGPSGSGKSTLLDALSSR 105 (599)
Q Consensus 84 ~~aI~G~sGsGKSTLl~~L~G~ 105 (599)
-++|+|++|+|||||++.+.+.
T Consensus 9 ki~~vG~~~vGKTsli~~l~~~ 30 (178)
T 2iwr_A 9 RLGVLGDARSGKSSLIHRFLTG 30 (178)
T ss_dssp EEEEECCGGGCHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4799999999999999999874
No 430
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=94.00 E-value=0.027 Score=52.63 Aligned_cols=23 Identities=22% Similarity=0.358 Sum_probs=19.7
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 007554 84 LTALMGPSGSGKSTLLDALSSRL 106 (599)
Q Consensus 84 ~~aI~G~sGsGKSTLl~~L~G~~ 106 (599)
-++|+|++|+|||||++.+.+..
T Consensus 22 ki~~~G~~~~GKssl~~~l~~~~ 44 (201)
T 2q3h_A 22 KCVLVGDGAVGKTSLVVSYTTNG 44 (201)
T ss_dssp EEEEECSTTSSHHHHHHHHHC--
T ss_pred EEEEECCCCCCHHHHHHHHHhCC
Confidence 58999999999999999998653
No 431
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=93.99 E-value=0.026 Score=52.48 Aligned_cols=23 Identities=30% Similarity=0.447 Sum_probs=20.3
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 007554 84 LTALMGPSGSGKSTLLDALSSRL 106 (599)
Q Consensus 84 ~~aI~G~sGsGKSTLl~~L~G~~ 106 (599)
-++|+|++|+|||||++.+.+..
T Consensus 23 ki~vvG~~~vGKTsLi~~l~~~~ 45 (187)
T 3c5c_A 23 NLAILGRRGAGKSALTVKFLTKR 45 (187)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCcHHHHHHHHHhCC
Confidence 48999999999999999988653
No 432
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=93.98 E-value=0.023 Score=53.74 Aligned_cols=23 Identities=26% Similarity=0.339 Sum_probs=20.8
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 007554 84 LTALMGPSGSGKSTLLDALSSRL 106 (599)
Q Consensus 84 ~~aI~G~sGsGKSTLl~~L~G~~ 106 (599)
-++|+|++|+|||||++.+.+..
T Consensus 27 ki~vvG~~~~GKSsli~~l~~~~ 49 (207)
T 2fv8_A 27 KLVVVGDGACGKTCLLIVFSKDE 49 (207)
T ss_dssp EEEEEECTTSSHHHHHHHHHHSS
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 58999999999999999999754
No 433
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=93.93 E-value=0.028 Score=58.14 Aligned_cols=24 Identities=29% Similarity=0.571 Sum_probs=21.7
Q ss_pred eEEEEECCCCCcHHHHHHHHHcCC
Q 007554 83 TLTALMGPSGSGKSTLLDALSSRL 106 (599)
Q Consensus 83 e~~aI~G~sGsGKSTLl~~L~G~~ 106 (599)
.+++|.||+|||||||.+.|+..+
T Consensus 8 ~lI~I~GptgSGKTtla~~La~~l 31 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAKKF 31 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHT
T ss_pred ceEEEECCCcCcHHHHHHHHHHHc
Confidence 479999999999999999998754
No 434
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=93.91 E-value=0.026 Score=51.67 Aligned_cols=26 Identities=23% Similarity=0.552 Sum_probs=22.2
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHcCC
Q 007554 81 PGTLTALMGPSGSGKSTLLDALSSRL 106 (599)
Q Consensus 81 ~Ge~~aI~G~sGsGKSTLl~~L~G~~ 106 (599)
.+..+.|.||+|+|||||++.++...
T Consensus 42 ~~~~vll~G~~G~GKT~la~~~~~~~ 67 (187)
T 2p65_A 42 TKNNPILLGDPGVGKTAIVEGLAIKI 67 (187)
T ss_dssp SSCEEEEESCGGGCHHHHHHHHHHHH
T ss_pred CCCceEEECCCCCCHHHHHHHHHHHH
Confidence 35567899999999999999998754
No 435
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=93.87 E-value=0.027 Score=53.68 Aligned_cols=22 Identities=32% Similarity=0.563 Sum_probs=19.6
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q 007554 84 LTALMGPSGSGKSTLLDALSSR 105 (599)
Q Consensus 84 ~~aI~G~sGsGKSTLl~~L~G~ 105 (599)
-++|+|++|+|||||++.+.+.
T Consensus 36 ki~vvG~~~vGKSsli~~l~~~ 57 (214)
T 2j1l_A 36 KVVLVGDGGCGKTSLLMVFADG 57 (214)
T ss_dssp EEEEEECTTSSHHHHHHHHHC-
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 4899999999999999999864
No 436
>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*
Probab=93.87 E-value=0.024 Score=56.90 Aligned_cols=23 Identities=30% Similarity=0.495 Sum_probs=21.5
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 007554 84 LTALMGPSGSGKSTLLDALSSRL 106 (599)
Q Consensus 84 ~~aI~G~sGsGKSTLl~~L~G~~ 106 (599)
.++|+|.+|+|||||++.|.|..
T Consensus 28 ~i~vvG~~~~GKSSLln~l~g~~ 50 (299)
T 2aka_B 28 QIAVVGGQSAGKSSVLENFVGRD 50 (299)
T ss_dssp EEEEEEBTTSCHHHHHHHHHTSC
T ss_pred eEEEEeCCCCCHHHHHHHHHCCC
Confidence 69999999999999999999874
No 437
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=93.86 E-value=0.027 Score=53.27 Aligned_cols=23 Identities=26% Similarity=0.309 Sum_probs=20.5
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 007554 84 LTALMGPSGSGKSTLLDALSSRL 106 (599)
Q Consensus 84 ~~aI~G~sGsGKSTLl~~L~G~~ 106 (599)
.++|+|++|+|||||++.+.+..
T Consensus 9 ki~vvG~~~~GKTsli~~l~~~~ 31 (214)
T 2fh5_B 9 AVLFVGLCDSGKTLLFVRLLTGQ 31 (214)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 57999999999999999998653
No 438
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=93.85 E-value=0.018 Score=52.82 Aligned_cols=22 Identities=36% Similarity=0.474 Sum_probs=9.1
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q 007554 84 LTALMGPSGSGKSTLLDALSSR 105 (599)
Q Consensus 84 ~~aI~G~sGsGKSTLl~~L~G~ 105 (599)
-++|+|++|+|||||++.+.+.
T Consensus 10 ki~v~G~~~~GKssl~~~l~~~ 31 (183)
T 2fu5_C 10 KLLLIGDSGVGKTCVLFRFSED 31 (183)
T ss_dssp EEEEECCCCC------------
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4899999999999999999764
No 439
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=93.85 E-value=0.03 Score=55.00 Aligned_cols=27 Identities=26% Similarity=0.444 Sum_probs=24.3
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHcCCC
Q 007554 81 PGTLTALMGPSGSGKSTLLDALSSRLA 107 (599)
Q Consensus 81 ~Ge~~aI~G~sGsGKSTLl~~L~G~~~ 107 (599)
+|.+++|.|++||||||+.+.|+..+.
T Consensus 26 ~~~~i~~eG~~GsGKsT~~~~l~~~l~ 52 (236)
T 3lv8_A 26 NAKFIVIEGLEGAGKSTAIQVVVETLQ 52 (236)
T ss_dssp CCCEEEEEESTTSCHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 588999999999999999999987654
No 440
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=93.85 E-value=0.028 Score=59.89 Aligned_cols=26 Identities=23% Similarity=0.323 Sum_probs=22.9
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHHcC
Q 007554 80 EPGTLTALMGPSGSGKSTLLDALSSR 105 (599)
Q Consensus 80 ~~Ge~~aI~G~sGsGKSTLl~~L~G~ 105 (599)
.+.+++.|+|++||||||+.+.|+..
T Consensus 256 ~~~~lIil~G~pGSGKSTla~~L~~~ 281 (416)
T 3zvl_A 256 PNPEVVVAVGFPGAGKSTFIQEHLVS 281 (416)
T ss_dssp SSCCEEEEESCTTSSHHHHHHHHTGG
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHh
Confidence 45689999999999999999999754
No 441
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=93.84 E-value=0.082 Score=57.30 Aligned_cols=71 Identities=21% Similarity=0.258 Sum_probs=53.9
Q ss_pred cCCCCHHHHHHHHHH--HHHhh---------------CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCC
Q 007554 192 LRGISGGERRRVSIA--LEILM---------------RPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQP 254 (599)
Q Consensus 192 ~~~LSGGerqRv~ia--~aL~~---------------~p~illlDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~p 254 (599)
.++.||||+|-.-+| .+++. .=.++++||. +-+|.......+++++++ |.-+|+++-.
T Consensus 377 ~g~~SGGE~qp~Yv~i~As~~~~y~~~~~~~~~~~~~~~rlvvlDEA-~kmD~~~~~~~~~l~~~l---glQliiatP~- 451 (483)
T 3euj_A 377 SSALSTGEAIGTGMSILLMVVQSWEEESRRMRAKDILPCRLLFLDQA-ARLDAMSINTLFELCERL---DMQLLIAAPE- 451 (483)
T ss_dssp GGGSCHHHHHHHHHHHHHHHHHHHHHHTSSSSCSSCCCCCEEEESSG-GGSCHHHHHHHHHHHHHT---TCEEEEEESS-
T ss_pred cCCCCCccccHHHHHHHHHHHHHhcccccccccCCCCceeEEEEecc-ccCCHHHHHHHHHHHHHc---CCEEEEECcc-
Confidence 457999999964443 33332 1257999999 999999999999999876 7777777744
Q ss_pred chHHHhccCeEEEEe
Q 007554 255 SSEVFELFDRLYLLS 269 (599)
Q Consensus 255 ~~~i~~~~D~v~~L~ 269 (599)
.+....|.++.+-
T Consensus 452 --~i~p~v~~~~~~~ 464 (483)
T 3euj_A 452 --NISPERGTTYKLV 464 (483)
T ss_dssp --SCCCSSSEEEECC
T ss_pred --hhhhccCceEEEE
Confidence 4567788888775
No 442
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=93.84 E-value=0.025 Score=53.75 Aligned_cols=23 Identities=26% Similarity=0.433 Sum_probs=20.8
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 007554 84 LTALMGPSGSGKSTLLDALSSRL 106 (599)
Q Consensus 84 ~~aI~G~sGsGKSTLl~~L~G~~ 106 (599)
-++|+|++|+|||||++.+.+..
T Consensus 30 ki~vvG~~~vGKSsLi~~l~~~~ 52 (205)
T 1gwn_A 30 KIVVVGDSQCGKTALLHVFAKDC 52 (205)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 48999999999999999999753
No 443
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=93.81 E-value=0.039 Score=53.37 Aligned_cols=60 Identities=17% Similarity=0.106 Sum_probs=39.3
Q ss_pred hhCCCEEEEeCCCC----CCCHHHHHHHHHHHHHHHh-CCCEEEEEecCCchH---------HHhccCeEEEEe
Q 007554 210 LMRPRLLFLDEPTS----GLDSAAAFFVTQTLRCLSR-DGRTVIASIHQPSSE---------VFELFDRLYLLS 269 (599)
Q Consensus 210 ~~~p~illlDEPts----gLD~~~~~~i~~~L~~l~~-~g~tvi~~~H~p~~~---------i~~~~D~v~~L~ 269 (599)
-.+|+++++|--+. .-|.....+++..|+++++ .|.+++++.|..... +...+|-|+.|.
T Consensus 133 ~~~~~~vviD~~~~l~~~~~~~~~~~~~~~~L~~~a~~~~i~vi~~~q~~~~~~~~~~~~~~~~~~aD~vi~l~ 206 (251)
T 2zts_A 133 AINAKRLVIDSIPSIALRLEEERKIREVLLKLNTILLEMGVTTILTTEAPDPQHGKLSRYGIEEFIARGVIVLD 206 (251)
T ss_dssp HTTCSEEEEECHHHHHHHSSSGGGHHHHHHHHHHHHHHHCCEEEEEECCC----CCSSSSSCGGGGCSEEEEEE
T ss_pred hcCCcEEEEEcHHHHhhhccChHHHHHHHHHHHHHHHHcCCCeEEEEEEecccccccccCCceeEEeeEEEEEE
Confidence 35889999986432 1144556677778888776 589999998864221 234678887774
No 444
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=93.75 E-value=0.029 Score=57.60 Aligned_cols=24 Identities=42% Similarity=0.613 Sum_probs=21.7
Q ss_pred eEEEEECCCCCcHHHHHHHHHcCC
Q 007554 83 TLTALMGPSGSGKSTLLDALSSRL 106 (599)
Q Consensus 83 e~~aI~G~sGsGKSTLl~~L~G~~ 106 (599)
.+++|+||+|||||||.+.|+..+
T Consensus 6 ~~i~i~GptGsGKTtla~~La~~l 29 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDLAMALADAL 29 (323)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHS
T ss_pred cEEEEECCCCCCHHHHHHHHHHHc
Confidence 479999999999999999999764
No 445
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=93.69 E-value=0.026 Score=53.96 Aligned_cols=25 Identities=40% Similarity=0.562 Sum_probs=21.9
Q ss_pred CeEEEEECCCCCcHHHHHHHHHcCC
Q 007554 82 GTLTALMGPSGSGKSTLLDALSSRL 106 (599)
Q Consensus 82 Ge~~aI~G~sGsGKSTLl~~L~G~~ 106 (599)
+-+++|+|++||||||+.+.|+..+
T Consensus 3 ~~~i~i~G~~gsGkst~~~~l~~~~ 27 (219)
T 2h92_A 3 AINIALDGPAAAGKSTIAKRVASEL 27 (219)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHT
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhc
Confidence 3578999999999999999998754
No 446
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=93.69 E-value=0.027 Score=52.92 Aligned_cols=23 Identities=26% Similarity=0.371 Sum_probs=20.5
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 007554 84 LTALMGPSGSGKSTLLDALSSRL 106 (599)
Q Consensus 84 ~~aI~G~sGsGKSTLl~~L~G~~ 106 (599)
-++|+|++|+|||||++.+.+..
T Consensus 27 ki~vvG~~~~GKSsli~~l~~~~ 49 (201)
T 2gco_A 27 KLVIVGDGACGKTCLLIVFSKDQ 49 (201)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHhCc
Confidence 47999999999999999999753
No 447
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=93.67 E-value=0.026 Score=52.82 Aligned_cols=23 Identities=26% Similarity=0.358 Sum_probs=20.2
Q ss_pred eEEEEECCCCCcHHHHHHHHHcC
Q 007554 83 TLTALMGPSGSGKSTLLDALSSR 105 (599)
Q Consensus 83 e~~aI~G~sGsGKSTLl~~L~G~ 105 (599)
--++|+|++|+|||||++.+.+.
T Consensus 30 ~ki~v~G~~~vGKSsLi~~l~~~ 52 (192)
T 2b6h_A 30 MRILMVGLDAAGKTTILYKLKLG 52 (192)
T ss_dssp EEEEEEESTTSSHHHHHHHHCSS
T ss_pred cEEEEECCCCCCHHHHHHHHHhC
Confidence 35899999999999999999653
No 448
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*
Probab=93.65 E-value=0.03 Score=55.48 Aligned_cols=23 Identities=26% Similarity=0.476 Sum_probs=21.0
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 007554 84 LTALMGPSGSGKSTLLDALSSRL 106 (599)
Q Consensus 84 ~~aI~G~sGsGKSTLl~~L~G~~ 106 (599)
.++|+|++|+|||||++.|.|..
T Consensus 38 ~I~lvG~~g~GKSSLin~l~~~~ 60 (262)
T 3def_A 38 TVLVLGKGGVGKSSTVNSLIGEQ 60 (262)
T ss_dssp EEEEEECTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 47999999999999999999864
No 449
>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11
Probab=93.62 E-value=0.038 Score=59.59 Aligned_cols=35 Identities=29% Similarity=0.421 Sum_probs=28.5
Q ss_pred eeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCC
Q 007554 71 VLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRL 106 (599)
Q Consensus 71 iL~~vs~~i~~Ge~~aI~G~sGsGKSTLl~~L~G~~ 106 (599)
+++.+ ..+-+|+..+|+|+||+|||||++.|++..
T Consensus 141 ~ID~L-~pi~kGq~~~i~G~sGvGKTtL~~~l~~~~ 175 (473)
T 1sky_E 141 VVDLL-APYIKGGKIGLFGGAGVGKTVLIQELIHNI 175 (473)
T ss_dssp HHHHH-SCEETTCEEEEECCSSSCHHHHHHHHHHHH
T ss_pred HHHHH-hhhccCCEEEEECCCCCCccHHHHHHHhhh
Confidence 45555 455679999999999999999999998654
No 450
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*
Probab=93.60 E-value=0.036 Score=53.47 Aligned_cols=27 Identities=22% Similarity=0.367 Sum_probs=24.1
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHcCCC
Q 007554 81 PGTLTALMGPSGSGKSTLLDALSSRLA 107 (599)
Q Consensus 81 ~Ge~~aI~G~sGsGKSTLl~~L~G~~~ 107 (599)
+|.++.+-|++||||||+.+.|...+.
T Consensus 2 ~g~~i~~eG~~gsGKsT~~~~l~~~l~ 28 (213)
T 4tmk_A 2 RSKYIVIEGLEGAGKTTARNVVVETLE 28 (213)
T ss_dssp CCCEEEEEECTTSCHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 488999999999999999999987654
No 451
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=93.59 E-value=0.042 Score=53.42 Aligned_cols=28 Identities=29% Similarity=0.369 Sum_probs=24.5
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHHcCCC
Q 007554 80 EPGTLTALMGPSGSGKSTLLDALSSRLA 107 (599)
Q Consensus 80 ~~Ge~~aI~G~sGsGKSTLl~~L~G~~~ 107 (599)
.+|.++.|.|++||||||+.+.|+..+.
T Consensus 19 ~~~~~i~~~G~~g~GKst~~~~l~~~l~ 46 (223)
T 3ld9_A 19 PGSMFITFEGIDGSGKTTQSHLLAEYLS 46 (223)
T ss_dssp CCCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHh
Confidence 3688999999999999999999986653
No 452
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=93.59 E-value=0.038 Score=53.88 Aligned_cols=25 Identities=24% Similarity=0.308 Sum_probs=22.8
Q ss_pred CeEEEEECCCCCcHHHHHHHHHcCC
Q 007554 82 GTLTALMGPSGSGKSTLLDALSSRL 106 (599)
Q Consensus 82 Ge~~aI~G~sGsGKSTLl~~L~G~~ 106 (599)
|.+++|-|+.||||||+.+.|+..+
T Consensus 2 ~~~i~~~G~~g~GKtt~~~~l~~~l 26 (241)
T 2ocp_A 2 PRRLSIEGNIAVGKSTFVKLLTKTY 26 (241)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHHC
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHc
Confidence 6789999999999999999998765
No 453
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8
Probab=93.59 E-value=0.036 Score=53.19 Aligned_cols=22 Identities=36% Similarity=0.554 Sum_probs=20.3
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q 007554 84 LTALMGPSGSGKSTLLDALSSR 105 (599)
Q Consensus 84 ~~aI~G~sGsGKSTLl~~L~G~ 105 (599)
.++|+|++|+|||||++.+.|.
T Consensus 39 kVvlvG~~~vGKSSLl~r~~~~ 60 (211)
T 2g3y_A 39 RVVLIGEQGVGKSTLANIFAGV 60 (211)
T ss_dssp EEEEECCTTSSHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4899999999999999999874
No 454
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=93.57 E-value=0.039 Score=52.37 Aligned_cols=42 Identities=17% Similarity=0.197 Sum_probs=30.0
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCc
Q 007554 212 RPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPS 255 (599)
Q Consensus 212 ~p~illlDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~p~ 255 (599)
+|.++++||.-. +|......+.+.+.+. ..+..+|++++++.
T Consensus 126 ~~~vlviDe~~~-l~~~~~~~l~~~l~~~-~~~~~~i~~t~~~~ 167 (250)
T 1njg_A 126 RFKVYLIDEVHM-LSRHSFNALLKTLEEP-PEHVKFLLATTDPQ 167 (250)
T ss_dssp SSEEEEEETGGG-SCHHHHHHHHHHHHSC-CTTEEEEEEESCGG
T ss_pred CceEEEEECccc-ccHHHHHHHHHHHhcC-CCceEEEEEeCChH
Confidence 578999999765 7877777776666442 23567888888753
No 455
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Probab=93.57 E-value=0.031 Score=55.61 Aligned_cols=23 Identities=26% Similarity=0.463 Sum_probs=20.9
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 007554 84 LTALMGPSGSGKSTLLDALSSRL 106 (599)
Q Consensus 84 ~~aI~G~sGsGKSTLl~~L~G~~ 106 (599)
.++++|++|+|||||+|.|.|..
T Consensus 41 ~I~vvG~~g~GKSSLin~l~~~~ 63 (270)
T 1h65_A 41 TILVMGKGGVGKSSTVNSIIGER 63 (270)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 57899999999999999999864
No 456
>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A*
Probab=93.53 E-value=0.037 Score=53.56 Aligned_cols=29 Identities=28% Similarity=0.398 Sum_probs=25.6
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHHcCCCC
Q 007554 80 EPGTLTALMGPSGSGKSTLLDALSSRLAS 108 (599)
Q Consensus 80 ~~Ge~~aI~G~sGsGKSTLl~~L~G~~~~ 108 (599)
.+|.++.+-|++||||||+.+.|+..+..
T Consensus 3 ~~g~~i~~eG~~g~GKst~~~~l~~~l~~ 31 (216)
T 3tmk_A 3 GRGKLILIEGLDRTGKTTQCNILYKKLQP 31 (216)
T ss_dssp CCCCEEEEEECSSSSHHHHHHHHHHHHCS
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhcc
Confidence 36899999999999999999999987653
No 457
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=93.53 E-value=0.027 Score=55.80 Aligned_cols=27 Identities=22% Similarity=0.244 Sum_probs=23.5
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHHcCC
Q 007554 80 EPGTLTALMGPSGSGKSTLLDALSSRL 106 (599)
Q Consensus 80 ~~Ge~~aI~G~sGsGKSTLl~~L~G~~ 106 (599)
+++.+++|.|+.||||||+.+.|+..+
T Consensus 22 ~~~~~I~ieG~~GsGKST~~~~L~~~l 48 (263)
T 1p5z_B 22 TRIKKISIEGNIAAGKSTFVNILKQLC 48 (263)
T ss_dssp -CCEEEEEECSTTSSHHHHHTTTGGGC
T ss_pred cCceEEEEECCCCCCHHHHHHHHHHhc
Confidence 467899999999999999999998665
No 458
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=93.51 E-value=0.039 Score=52.88 Aligned_cols=23 Identities=30% Similarity=0.609 Sum_probs=20.0
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 007554 84 LTALMGPSGSGKSTLLDALSSRL 106 (599)
Q Consensus 84 ~~aI~G~sGsGKSTLl~~L~G~~ 106 (599)
++.|+||+||||+|..+.|+..+
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~~~ 24 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAKEK 24 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 46799999999999999998543
No 459
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=93.51 E-value=0.031 Score=51.90 Aligned_cols=22 Identities=23% Similarity=0.385 Sum_probs=20.2
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q 007554 84 LTALMGPSGSGKSTLLDALSSR 105 (599)
Q Consensus 84 ~~aI~G~sGsGKSTLl~~L~G~ 105 (599)
-++|+|++|+|||||++.+.+.
T Consensus 20 ki~v~G~~~~GKssli~~l~~~ 41 (194)
T 2atx_A 20 KCVVVGDGAVGKTCLLMSYAND 41 (194)
T ss_dssp EEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4899999999999999999875
No 460
>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}
Probab=93.49 E-value=0.018 Score=54.77 Aligned_cols=23 Identities=26% Similarity=0.456 Sum_probs=20.1
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 007554 84 LTALMGPSGSGKSTLLDALSSRL 106 (599)
Q Consensus 84 ~~aI~G~sGsGKSTLl~~L~G~~ 106 (599)
-++|+|++|+|||||++.|.+..
T Consensus 13 ki~vvG~~~~GKSsli~~l~~~~ 35 (218)
T 4djt_A 13 KICLIGDGGVGKTTYINRVLDGR 35 (218)
T ss_dssp EEEEECCTTSSHHHHHCBCTTCS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 47899999999999999998643
No 461
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=93.47 E-value=0.037 Score=55.12 Aligned_cols=25 Identities=28% Similarity=0.508 Sum_probs=22.5
Q ss_pred eEEEEECCCCCcHHHHHHHHHcCCC
Q 007554 83 TLTALMGPSGSGKSTLLDALSSRLA 107 (599)
Q Consensus 83 e~~aI~G~sGsGKSTLl~~L~G~~~ 107 (599)
..++++|.+|+|||||+|.|.|...
T Consensus 100 ~~v~~vG~~~vGKSslin~l~~~~~ 124 (262)
T 3cnl_A 100 ARVLIVGVPNTGKSTIINKLKGKRA 124 (262)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTTCC
T ss_pred hheEEeCCCCCCHHHHHHHHhcccc
Confidence 4789999999999999999998754
No 462
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=93.36 E-value=0.036 Score=53.01 Aligned_cols=24 Identities=38% Similarity=0.592 Sum_probs=20.8
Q ss_pred eEEEEECCCCCcHHHHHHHHHcCC
Q 007554 83 TLTALMGPSGSGKSTLLDALSSRL 106 (599)
Q Consensus 83 e~~aI~G~sGsGKSTLl~~L~G~~ 106 (599)
-.++|+|.+|+|||||++.+++..
T Consensus 39 ~~i~ivG~~gvGKTtl~~~l~~~~ 62 (226)
T 2hf9_A 39 VAFDFMGAIGSGKTLLIEKLIDNL 62 (226)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHh
Confidence 468999999999999999998643
No 463
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}
Probab=93.31 E-value=0.039 Score=52.80 Aligned_cols=23 Identities=39% Similarity=0.567 Sum_probs=20.7
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 007554 84 LTALMGPSGSGKSTLLDALSSRL 106 (599)
Q Consensus 84 ~~aI~G~sGsGKSTLl~~L~G~~ 106 (599)
-++|+|++|+|||||++.+.+..
T Consensus 15 ki~v~G~~~vGKSsli~~l~~~~ 37 (223)
T 3cpj_B 15 KIVLIGDSGVGKSNLLSRFTKNE 37 (223)
T ss_dssp EEEEESCTTSSHHHHHHHHHHCC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 48999999999999999998754
No 464
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=93.29 E-value=0.05 Score=55.54 Aligned_cols=25 Identities=40% Similarity=0.501 Sum_probs=22.0
Q ss_pred CeEEEEECCCCCcHHHHHHHHHcCC
Q 007554 82 GTLTALMGPSGSGKSTLLDALSSRL 106 (599)
Q Consensus 82 Ge~~aI~G~sGsGKSTLl~~L~G~~ 106 (599)
..+++|+||+|||||||...|+...
T Consensus 10 ~~~i~i~GptgsGKt~la~~La~~~ 34 (316)
T 3foz_A 10 PKAIFLMGPTASGKTALAIELRKIL 34 (316)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHS
T ss_pred CcEEEEECCCccCHHHHHHHHHHhC
Confidence 4589999999999999999998653
No 465
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=93.23 E-value=0.037 Score=52.14 Aligned_cols=23 Identities=17% Similarity=0.361 Sum_probs=20.3
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 007554 84 LTALMGPSGSGKSTLLDALSSRL 106 (599)
Q Consensus 84 ~~aI~G~sGsGKSTLl~~L~G~~ 106 (599)
-++|+|++|+|||||++.+.+..
T Consensus 31 ki~vvG~~~vGKSsli~~l~~~~ 53 (201)
T 2hup_A 31 KLVLVGDASVGKTCVVQRFKTGA 53 (201)
T ss_dssp EEEEEECTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHhhCC
Confidence 48999999999999999998653
No 466
>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C
Probab=93.22 E-value=0.019 Score=53.80 Aligned_cols=22 Identities=32% Similarity=0.552 Sum_probs=4.2
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q 007554 84 LTALMGPSGSGKSTLLDALSSR 105 (599)
Q Consensus 84 ~~aI~G~sGsGKSTLl~~L~G~ 105 (599)
-++|+|++|+|||||++.+.+.
T Consensus 22 ~i~v~G~~~~GKssli~~l~~~ 43 (208)
T 2yc2_C 22 KVAVVGEATVGKSALISMFTSK 43 (208)
T ss_dssp EEEEC-----------------
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 5899999999999999999765
No 467
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Probab=93.12 E-value=0.026 Score=52.25 Aligned_cols=22 Identities=23% Similarity=0.392 Sum_probs=19.6
Q ss_pred eEEEEECCCCCcHHHHHHHHHc
Q 007554 83 TLTALMGPSGSGKSTLLDALSS 104 (599)
Q Consensus 83 e~~aI~G~sGsGKSTLl~~L~G 104 (599)
=-++|+|++|+|||||++.+.+
T Consensus 23 ~~i~v~G~~~~GKssli~~l~~ 44 (189)
T 2x77_A 23 IRVLMLGLDNAGKTSILYRLHL 44 (189)
T ss_dssp EEEEEEEETTSSHHHHHHHTCC
T ss_pred eEEEEECCCCCCHHHHHHHHHc
Confidence 3589999999999999999964
No 468
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=92.97 E-value=0.05 Score=57.52 Aligned_cols=25 Identities=28% Similarity=0.482 Sum_probs=21.9
Q ss_pred CeEEEEECCCCCcHHHHHHHHHcCC
Q 007554 82 GTLTALMGPSGSGKSTLLDALSSRL 106 (599)
Q Consensus 82 Ge~~aI~G~sGsGKSTLl~~L~G~~ 106 (599)
-.+++|+||+|||||||.+.|+..+
T Consensus 2 ~~~i~i~GptgsGKttla~~La~~~ 26 (409)
T 3eph_A 2 KKVIVIAGTTGVGKSQLSIQLAQKF 26 (409)
T ss_dssp CEEEEEEECSSSSHHHHHHHHHHHH
T ss_pred CcEEEEECcchhhHHHHHHHHHHHC
Confidence 3589999999999999999998654
No 469
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=92.97 E-value=0.046 Score=52.08 Aligned_cols=22 Identities=27% Similarity=0.469 Sum_probs=20.0
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q 007554 84 LTALMGPSGSGKSTLLDALSSR 105 (599)
Q Consensus 84 ~~aI~G~sGsGKSTLl~~L~G~ 105 (599)
-++|+|++|+|||||++.+.+.
T Consensus 29 ki~vvG~~~vGKSsL~~~l~~~ 50 (214)
T 3q3j_B 29 KLVLVGDVQCGKTAMLQVLAKD 50 (214)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHhcC
Confidence 4889999999999999999865
No 470
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=92.95 E-value=0.042 Score=51.87 Aligned_cols=23 Identities=22% Similarity=0.371 Sum_probs=20.2
Q ss_pred eEEEEECCCCCcHHHHHHHHHcC
Q 007554 83 TLTALMGPSGSGKSTLLDALSSR 105 (599)
Q Consensus 83 e~~aI~G~sGsGKSTLl~~L~G~ 105 (599)
=-++|+|++|+|||||++.+.+.
T Consensus 31 ~ki~vvG~~~~GKSsLi~~l~~~ 53 (204)
T 4gzl_A 31 IKCVVVGDGAVGKTCLLISYTTN 53 (204)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEEECcCCCCHHHHHHHHHhC
Confidence 35899999999999999999854
No 471
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=92.93 E-value=0.015 Score=59.57 Aligned_cols=42 Identities=14% Similarity=0.158 Sum_probs=31.9
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCc
Q 007554 212 RPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPS 255 (599)
Q Consensus 212 ~p~illlDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~p~ 255 (599)
+++++++|| ...|++.....+.+.+.+... +..+|++++++.
T Consensus 133 ~~~vliiDE-~~~l~~~~~~~Ll~~le~~~~-~~~~il~~~~~~ 174 (353)
T 1sxj_D 133 PYKIIILDE-ADSMTADAQSALRRTMETYSG-VTRFCLICNYVT 174 (353)
T ss_dssp SCEEEEETT-GGGSCHHHHHHHHHHHHHTTT-TEEEEEEESCGG
T ss_pred CceEEEEEC-CCccCHHHHHHHHHHHHhcCC-CceEEEEeCchh
Confidence 667999999 788999888888888877543 345666777654
No 472
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=92.89 E-value=0.041 Score=59.27 Aligned_cols=52 Identities=13% Similarity=0.089 Sum_probs=32.8
Q ss_pred HHHHHHHHHHHHhhCCCEEEEeCCC-CCCCHHHHHHHHHHHHHHHhCCCEEEEEecC
Q 007554 198 GERRRVSIALEILMRPRLLFLDEPT-SGLDSAAAFFVTQTLRCLSRDGRTVIASIHQ 253 (599)
Q Consensus 198 GerqRv~ia~aL~~~p~illlDEPt-sgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~ 253 (599)
.|.+....+...+.+++++++.... .++.... ..+.+.|+ +.++.+|++.+.
T Consensus 88 ~~~~~~~~~~~~~~~ad~il~VvD~~~~~~~~d-~~l~~~l~---~~~~pvilV~NK 140 (456)
T 4dcu_A 88 FLAQIRQQAEIAMDEADVIIFMVNGREGVTAAD-EEVAKILY---RTKKPVVLAVNK 140 (456)
T ss_dssp CHHHHHHHHHHHHHHCSEEEEEEESSSCSCHHH-HHHHHHHT---TCCSCEEEEEEC
T ss_pred HHHHHHHHHHhhHhhCCEEEEEEeCCCCCChHH-HHHHHHHH---HcCCCEEEEEEC
Confidence 3666667777788888876665444 4555544 44555543 357777777765
No 473
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=92.89 E-value=0.014 Score=57.69 Aligned_cols=29 Identities=31% Similarity=0.544 Sum_probs=23.0
Q ss_pred EEEEeCCeEEEEECCCCCcHHHHHHHHHcCC
Q 007554 76 TGYAEPGTLTALMGPSGSGKSTLLDALSSRL 106 (599)
Q Consensus 76 s~~i~~Ge~~aI~G~sGsGKSTLl~~L~G~~ 106 (599)
....+.| +.|.||+|+|||||+++|++..
T Consensus 40 ~~~~~~~--vll~G~~GtGKT~la~~la~~~ 68 (268)
T 2r62_A 40 GAKIPKG--VLLVGPPGTGKTLLAKAVAGEA 68 (268)
T ss_dssp SCCCCSC--CCCBCSSCSSHHHHHHHHHHHH
T ss_pred CCCCCce--EEEECCCCCcHHHHHHHHHHHh
Confidence 3334445 7799999999999999998753
No 474
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=92.80 E-value=0.045 Score=51.66 Aligned_cols=23 Identities=22% Similarity=0.289 Sum_probs=20.3
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 007554 84 LTALMGPSGSGKSTLLDALSSRL 106 (599)
Q Consensus 84 ~~aI~G~sGsGKSTLl~~L~G~~ 106 (599)
-++|+|++|+|||||++.+.+..
T Consensus 11 ki~i~G~~~~GKTsli~~l~~~~ 33 (212)
T 2j0v_A 11 KCVTVGDGAVGKTCMLICYTSNK 33 (212)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 48999999999999999998643
No 475
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=92.59 E-value=0.073 Score=54.62 Aligned_cols=28 Identities=29% Similarity=0.447 Sum_probs=25.5
Q ss_pred EEEeCCeEEEEECCCCCcHHHHHHHHHc
Q 007554 77 GYAEPGTLTALMGPSGSGKSTLLDALSS 104 (599)
Q Consensus 77 ~~i~~Ge~~aI~G~sGsGKSTLl~~L~G 104 (599)
+-+.+|.++.|.||+|+|||||...++.
T Consensus 118 GGi~~gsviLI~GpPGsGKTtLAlqlA~ 145 (331)
T 2vhj_A 118 GHRYASGMVIVTGKGNSGKTPLVHALGE 145 (331)
T ss_dssp TEEEESEEEEEECSCSSSHHHHHHHHHH
T ss_pred CCCCCCcEEEEEcCCCCCHHHHHHHHHH
Confidence 5688999999999999999999999874
No 476
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=92.55 E-value=0.065 Score=47.87 Aligned_cols=43 Identities=14% Similarity=0.082 Sum_probs=30.2
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCch
Q 007554 212 RPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSS 256 (599)
Q Consensus 212 ~p~illlDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~p~~ 256 (599)
+..+|++||.- .|++..+..+.+.|... ..+..+|++++.+..
T Consensus 76 ~~g~l~ldei~-~l~~~~q~~Ll~~l~~~-~~~~~~I~~t~~~~~ 118 (145)
T 3n70_A 76 QGGTLVLSHPE-HLTREQQYHLVQLQSQE-HRPFRLIGIGDTSLV 118 (145)
T ss_dssp TTSCEEEECGG-GSCHHHHHHHHHHHHSS-SCSSCEEEEESSCHH
T ss_pred CCcEEEEcChH-HCCHHHHHHHHHHHhhc-CCCEEEEEECCcCHH
Confidence 45689999984 68888888888888332 234567777776543
No 477
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=92.50 E-value=0.066 Score=50.24 Aligned_cols=53 Identities=17% Similarity=0.194 Sum_probs=37.6
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCC---------chHHHhccCeEEEEe
Q 007554 212 RPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQP---------SSEVFELFDRLYLLS 269 (599)
Q Consensus 212 ~p~illlDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~p---------~~~i~~~~D~v~~L~ 269 (599)
+++++++||--- +|+ .+++.|+.++++|..|+++-++. ...+...+|.|.-|+
T Consensus 76 ~~dvviIDE~Q~-~~~----~~~~~l~~l~~~~~~Vi~~Gl~~~f~~~~f~~~~~ll~~ad~v~~l~ 137 (184)
T 2orw_A 76 DTRGVFIDEVQF-FNP----SLFEVVKDLLDRGIDVFCAGLDLTHKQNPFETTALLLSLADTVIKKK 137 (184)
T ss_dssp TEEEEEECCGGG-SCT----THHHHHHHHHHTTCEEEEEEESBCTTSCBCHHHHHHHHHCSEEEECC
T ss_pred CCCEEEEECccc-CCH----HHHHHHHHHHHCCCCEEEEeeccccccCCccchHHHHHHhhheEEee
Confidence 578999999743 443 36667777777789999988842 244566788886664
No 478
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=92.40 E-value=0.021 Score=66.05 Aligned_cols=33 Identities=27% Similarity=0.394 Sum_probs=28.9
Q ss_pred eEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCC
Q 007554 75 LTGYAEPGTLTALMGPSGSGKSTLLDALSSRLA 107 (599)
Q Consensus 75 vs~~i~~Ge~~aI~G~sGsGKSTLl~~L~G~~~ 107 (599)
.++.+.+|+.++|.||||+|||||.++|++...
T Consensus 504 ~~~~~~~~~~vLL~GppGtGKT~Lakala~~~~ 536 (806)
T 1ypw_A 504 LKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQ 536 (806)
T ss_dssp TCCCCCCCCCCCCBCCTTSSHHHHHHHHHHHHT
T ss_pred HhcCCCCCceeEEECCCCCCHHHHHHHHHHHhC
Confidence 355678999999999999999999999998753
No 479
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=92.30 E-value=0.069 Score=50.01 Aligned_cols=41 Identities=24% Similarity=0.301 Sum_probs=28.4
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCC
Q 007554 212 RPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQP 254 (599)
Q Consensus 212 ~p~illlDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~p 254 (599)
++.++++||. ..++......+.+.+.+.. .+..+|++++.+
T Consensus 102 ~~~vliiDe~-~~l~~~~~~~l~~~l~~~~-~~~~~i~~~~~~ 142 (226)
T 2chg_A 102 PFKIIFLDEA-DALTADAQAALRRTMEMYS-KSCRFILSCNYV 142 (226)
T ss_dssp SCEEEEEETG-GGSCHHHHHHHHHHHHHTT-TTEEEEEEESCG
T ss_pred CceEEEEeCh-hhcCHHHHHHHHHHHHhcC-CCCeEEEEeCCh
Confidence 6889999995 4567777777777766532 345677777664
No 480
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=92.20 E-value=0.071 Score=53.60 Aligned_cols=27 Identities=26% Similarity=0.438 Sum_probs=23.0
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHHcCC
Q 007554 80 EPGTLTALMGPSGSGKSTLLDALSSRL 106 (599)
Q Consensus 80 ~~Ge~~aI~G~sGsGKSTLl~~L~G~~ 106 (599)
.++.-+.|.||+|+|||||.+.++..+
T Consensus 65 ~~~~~vll~G~~GtGKT~la~~la~~l 91 (309)
T 3syl_A 65 TPTLHMSFTGNPGTGKTTVALKMAGLL 91 (309)
T ss_dssp CCCCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHH
Confidence 345679999999999999999998765
No 481
>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*
Probab=92.15 E-value=0.095 Score=53.24 Aligned_cols=24 Identities=46% Similarity=0.623 Sum_probs=21.1
Q ss_pred CeEEEEECCCCCcHHHHHHHHHcC
Q 007554 82 GTLTALMGPSGSGKSTLLDALSSR 105 (599)
Q Consensus 82 Ge~~aI~G~sGsGKSTLl~~L~G~ 105 (599)
+--++|+|++|+|||||++.+.+.
T Consensus 3 ~~KI~lvG~~~vGKSSLi~~l~~~ 26 (307)
T 3r7w_A 3 GSKLLLMGRSGSGKSSMRSIIFSN 26 (307)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHSC
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 346899999999999999998876
No 482
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=91.98 E-value=0.085 Score=54.78 Aligned_cols=26 Identities=35% Similarity=0.506 Sum_probs=22.8
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHcCC
Q 007554 81 PGTLTALMGPSGSGKSTLLDALSSRL 106 (599)
Q Consensus 81 ~Ge~~aI~G~sGsGKSTLl~~L~G~~ 106 (599)
..-.++|+|++|+|||||++.|++.+
T Consensus 78 ~~~~I~i~G~~G~GKSTl~~~L~~~l 103 (355)
T 3p32_A 78 NAHRVGITGVPGVGKSTAIEALGMHL 103 (355)
T ss_dssp CSEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHH
Confidence 44689999999999999999998765
No 483
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=91.97 E-value=0.084 Score=53.09 Aligned_cols=25 Identities=28% Similarity=0.454 Sum_probs=22.2
Q ss_pred CeEEEEECCCCCcHHHHHHHHHcCC
Q 007554 82 GTLTALMGPSGSGKSTLLDALSSRL 106 (599)
Q Consensus 82 Ge~~aI~G~sGsGKSTLl~~L~G~~ 106 (599)
+-.++++|.+|+|||||+|.|.|..
T Consensus 120 ~~~v~~vG~~nvGKSsliN~l~~~~ 144 (282)
T 1puj_A 120 AIRALIIGIPNVGKSTLINRLAKKN 144 (282)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHTSC
T ss_pred CceEEEEecCCCchHHHHHHHhcCc
Confidence 3468999999999999999999865
No 484
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=91.96 E-value=0.086 Score=52.19 Aligned_cols=26 Identities=31% Similarity=0.459 Sum_probs=22.3
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHHcC
Q 007554 80 EPGTLTALMGPSGSGKSTLLDALSSR 105 (599)
Q Consensus 80 ~~Ge~~aI~G~sGsGKSTLl~~L~G~ 105 (599)
.+..-+.|.||+|+|||||.+.++..
T Consensus 62 ~~~~~vLl~G~~GtGKT~la~~ia~~ 87 (272)
T 1d2n_A 62 TPLVSVLLEGPPHSGKTALAAKIAEE 87 (272)
T ss_dssp CSEEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHH
Confidence 34557889999999999999999864
No 485
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=91.94 E-value=0.081 Score=51.62 Aligned_cols=23 Identities=26% Similarity=0.510 Sum_probs=20.3
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 007554 84 LTALMGPSGSGKSTLLDALSSRL 106 (599)
Q Consensus 84 ~~aI~G~sGsGKSTLl~~L~G~~ 106 (599)
-++|+|++||||||+.+.|+..+
T Consensus 10 ~~~~~G~pGsGKsT~a~~L~~~~ 32 (230)
T 3gmt_A 10 RLILLGAPGAGKGTQANFIKEKF 32 (230)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred ceeeECCCCCCHHHHHHHHHHHh
Confidence 47999999999999999998644
No 486
>2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A
Probab=91.86 E-value=0.054 Score=56.20 Aligned_cols=23 Identities=30% Similarity=0.495 Sum_probs=21.4
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 007554 84 LTALMGPSGSGKSTLLDALSSRL 106 (599)
Q Consensus 84 ~~aI~G~sGsGKSTLl~~L~G~~ 106 (599)
.++|+|.+|+|||||++.|.|..
T Consensus 33 ~I~vvG~~~~GKSSLln~L~g~~ 55 (353)
T 2x2e_A 33 QIAVVGGQSAGKSSVLENFVGRD 55 (353)
T ss_dssp EEEEECBTTSSHHHHHHTTTTSC
T ss_pred eEEEECCCCCCHHHHHHHHhCCC
Confidence 68999999999999999999964
No 487
>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}
Probab=91.07 E-value=0.031 Score=52.52 Aligned_cols=21 Identities=24% Similarity=0.411 Sum_probs=18.9
Q ss_pred EEEEECCCCCcHHHHHHHHHc
Q 007554 84 LTALMGPSGSGKSTLLDALSS 104 (599)
Q Consensus 84 ~~aI~G~sGsGKSTLl~~L~G 104 (599)
-++|+|++|+|||||++.+.+
T Consensus 32 ki~v~G~~~~GKSsli~~l~~ 52 (204)
T 3th5_A 32 KCVVVGDGAVGKTCLLISYTT 52 (204)
Confidence 589999999999999998864
No 488
>1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2
Probab=91.61 E-value=0.079 Score=56.06 Aligned_cols=22 Identities=27% Similarity=0.345 Sum_probs=19.3
Q ss_pred EEEECCCCCcHHHHHHHHHcCC
Q 007554 85 TALMGPSGSGKSTLLDALSSRL 106 (599)
Q Consensus 85 ~aI~G~sGsGKSTLl~~L~G~~ 106 (599)
++|+|.+++|||||+|.|.|..
T Consensus 3 I~ivG~pnvGKSTL~n~L~~~~ 24 (397)
T 1wxq_A 3 IGVVGKPNVGKSTFFSAATLVD 24 (397)
T ss_dssp EEEEECTTSSHHHHHHHHHC--
T ss_pred EEEECCCCCCHHHHHHHHHCCC
Confidence 7899999999999999999864
No 489
>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...
Probab=91.58 E-value=0.06 Score=51.28 Aligned_cols=22 Identities=32% Similarity=0.614 Sum_probs=18.8
Q ss_pred EEEEECCCCCcHHHHHHH-HHcC
Q 007554 84 LTALMGPSGSGKSTLLDA-LSSR 105 (599)
Q Consensus 84 ~~aI~G~sGsGKSTLl~~-L~G~ 105 (599)
-++|+|++|+|||||++. +.|.
T Consensus 17 ki~v~G~~~~GKSsli~~~~~~~ 39 (221)
T 3gj0_A 17 KLVLVGDGGTGKTTFVKRHLTGE 39 (221)
T ss_dssp EEEEEECTTSSHHHHHTTBHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 378999999999999998 5554
No 490
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=91.56 E-value=0.085 Score=53.21 Aligned_cols=24 Identities=21% Similarity=0.375 Sum_probs=20.9
Q ss_pred eEEEEECCCCCcHHHHHHHHHcCC
Q 007554 83 TLTALMGPSGSGKSTLLDALSSRL 106 (599)
Q Consensus 83 e~~aI~G~sGsGKSTLl~~L~G~~ 106 (599)
..+.|.||+|+|||+|.++|+..+
T Consensus 37 ~~lLl~GppGtGKT~la~aiA~~l 60 (293)
T 3t15_A 37 LILGIWGGKGQGKSFQCELVFRKM 60 (293)
T ss_dssp SEEEEEECTTSCHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 467888999999999999999754
No 491
>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}
Probab=91.53 E-value=0.021 Score=53.59 Aligned_cols=23 Identities=39% Similarity=0.472 Sum_probs=20.2
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 007554 84 LTALMGPSGSGKSTLLDALSSRL 106 (599)
Q Consensus 84 ~~aI~G~sGsGKSTLl~~L~G~~ 106 (599)
-++|+|++|+|||||++.|.+..
T Consensus 35 ki~vvG~~~~GKSsli~~l~~~~ 57 (199)
T 3l0i_B 35 KLLLIGDSGVGKSCLLLRFADDT 57 (199)
T ss_dssp EEEEECCTTSCCTTTTTSSBCCC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 48999999999999999998653
No 492
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=91.53 E-value=0.1 Score=53.07 Aligned_cols=25 Identities=40% Similarity=0.436 Sum_probs=22.4
Q ss_pred CeEEEEECCCCCcHHHHHHHHHcCC
Q 007554 82 GTLTALMGPSGSGKSTLLDALSSRL 106 (599)
Q Consensus 82 Ge~~aI~G~sGsGKSTLl~~L~G~~ 106 (599)
+.-+.|.||+|+|||+|+++|+...
T Consensus 152 ~~~lll~G~~GtGKT~La~aia~~~ 176 (308)
T 2qgz_A 152 QKGLYLYGDMGIGKSYLLAAMAHEL 176 (308)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHHH
Confidence 6789999999999999999998654
No 493
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=91.52 E-value=0.077 Score=56.73 Aligned_cols=22 Identities=27% Similarity=0.602 Sum_probs=20.4
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q 007554 84 LTALMGPSGSGKSTLLDALSSR 105 (599)
Q Consensus 84 ~~aI~G~sGsGKSTLl~~L~G~ 105 (599)
.++|+|++|+|||||+|.|.|.
T Consensus 5 ~V~ivG~~nvGKStL~n~l~~~ 26 (436)
T 2hjg_A 5 VVAIVGRPNVGKSTIFNRIAGE 26 (436)
T ss_dssp EEEEECSTTSSHHHHHHHHEEE
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5899999999999999999875
No 494
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=91.42 E-value=0.1 Score=53.15 Aligned_cols=27 Identities=37% Similarity=0.604 Sum_probs=22.8
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHHcCC
Q 007554 80 EPGTLTALMGPSGSGKSTLLDALSSRL 106 (599)
Q Consensus 80 ~~Ge~~aI~G~sGsGKSTLl~~L~G~~ 106 (599)
.+..-+.|.||+|+|||+|.++++...
T Consensus 49 ~~~~~vLl~GppGtGKT~la~aia~~~ 75 (322)
T 3eie_A 49 KPTSGILLYGPPGTGKSYLAKAVATEA 75 (322)
T ss_dssp CCCCEEEEECSSSSCHHHHHHHHHHHH
T ss_pred CCCCeEEEECCCCCcHHHHHHHHHHHH
Confidence 345568999999999999999998653
No 495
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=91.35 E-value=0.096 Score=54.04 Aligned_cols=28 Identities=21% Similarity=0.449 Sum_probs=24.5
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHHcCCC
Q 007554 80 EPGTLTALMGPSGSGKSTLLDALSSRLA 107 (599)
Q Consensus 80 ~~Ge~~aI~G~sGsGKSTLl~~L~G~~~ 107 (599)
.+|..+.|.||+|+|||||.+.++....
T Consensus 68 ~~~~~vLl~GppGtGKT~la~~la~~l~ 95 (368)
T 3uk6_A 68 IAGRAVLIAGQPGTGKTAIAMGMAQALG 95 (368)
T ss_dssp CTTCEEEEEESTTSSHHHHHHHHHHHHC
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHhc
Confidence 4567899999999999999999997654
No 496
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=91.21 E-value=0.099 Score=52.27 Aligned_cols=25 Identities=24% Similarity=0.454 Sum_probs=21.7
Q ss_pred CeEEEEECCCCCcHHHHHHHHHcCC
Q 007554 82 GTLTALMGPSGSGKSTLLDALSSRL 106 (599)
Q Consensus 82 Ge~~aI~G~sGsGKSTLl~~L~G~~ 106 (599)
+.-+.|.||+|+|||||.+.++...
T Consensus 50 ~~~vll~G~~GtGKT~la~~la~~l 74 (310)
T 1ofh_A 50 PKNILMIGPTGVGKTEIARRLAKLA 74 (310)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHHh
Confidence 3467899999999999999998765
No 497
>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP}
Probab=91.18 E-value=0.081 Score=57.11 Aligned_cols=25 Identities=40% Similarity=0.577 Sum_probs=21.8
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHcC
Q 007554 81 PGTLTALMGPSGSGKSTLLDALSSR 105 (599)
Q Consensus 81 ~Ge~~aI~G~sGsGKSTLl~~L~G~ 105 (599)
.|=.++|+|++|+|||||+|.|+|.
T Consensus 223 ~~~kV~ivG~~nvGKSSLln~L~~~ 247 (462)
T 3geh_A 223 TGLKVAIVGRPNVGKSSLLNAWSQS 247 (462)
T ss_dssp HCEEEEEEECTTSSHHHHHHHHHHH
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhCC
Confidence 3445999999999999999999985
No 498
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}
Probab=91.01 E-value=0.095 Score=54.83 Aligned_cols=25 Identities=24% Similarity=0.389 Sum_probs=22.6
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHcC
Q 007554 81 PGTLTALMGPSGSGKSTLLDALSSR 105 (599)
Q Consensus 81 ~Ge~~aI~G~sGsGKSTLl~~L~G~ 105 (599)
++..++++|.+|+|||||+|.|.|.
T Consensus 161 ~~~~i~~vG~~nvGKStliN~L~~~ 185 (369)
T 3ec1_A 161 EGGDVYVVGCTNVGKSTFINRIIEE 185 (369)
T ss_dssp TTSCEEEECCTTSSHHHHHHHHHHH
T ss_pred ccCcEEEEcCCCCchHHHHHHHHhh
Confidence 4567999999999999999999986
No 499
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=90.99 E-value=0.087 Score=58.54 Aligned_cols=34 Identities=29% Similarity=0.550 Sum_probs=26.9
Q ss_pred ceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCC
Q 007554 70 NVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRL 106 (599)
Q Consensus 70 ~iL~~vs~~i~~Ge~~aI~G~sGsGKSTLl~~L~G~~ 106 (599)
.+|.+++ .+--.++|+|++|+|||||+|.|.|..
T Consensus 29 ~~L~~i~---~~~~~VaivG~pnvGKStLiN~L~g~~ 62 (592)
T 1f5n_A 29 KILSAIT---QPMVVVAIVGLYRTGKSYLMNKLAGKK 62 (592)
T ss_dssp HHHHTCC---SBEEEEEEEEBTTSSHHHHHHHHTTCS
T ss_pred HHHHhcc---CCCcEEEEECCCCCCHHHHHHhHcCCC
Confidence 3566653 334578999999999999999999874
No 500
>1knx_A Probable HPR(Ser) kinase/phosphatase; HPR kinase, HPR kinase/phosphatase, HPRK/P, P-loop, walker A BOX, catabolite repression; 2.50A {Mycoplasma pneumoniae} SCOP: c.98.2.1 c.91.1.2
Probab=90.97 E-value=0.21 Score=50.98 Aligned_cols=35 Identities=29% Similarity=0.200 Sum_probs=27.9
Q ss_pred cceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHc
Q 007554 69 HNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSS 104 (599)
Q Consensus 69 ~~iL~~vs~~i~~Ge~~aI~G~sGsGKSTLl~~L~G 104 (599)
...+|+.-..+ .|.-+.|.|+||+|||||.-.|..
T Consensus 135 ~~~~H~~~v~~-~g~gvli~G~sG~GKStlal~l~~ 169 (312)
T 1knx_A 135 VAQIHGVLLEV-FGVGVLLTGRSGIGKSECALDLIN 169 (312)
T ss_dssp CEEEEEEEEEE-TTEEEEEEESSSSSHHHHHHHHHT
T ss_pred cceeEEEEEEE-CCEEEEEEcCCCCCHHHHHHHHHH
Confidence 45677755555 588899999999999999988753
Done!