Query 007555
Match_columns 598
No_of_seqs 215 out of 702
Neff 6.6
Searched_HMMs 29240
Date Mon Mar 25 04:42:06 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007555.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/007555hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1pw4_A Glycerol-3-phosphate tr 99.8 1.3E-18 4.4E-23 184.9 32.6 377 146-557 27-411 (451)
2 3o7q_A L-fucose-proton symport 99.8 2E-15 7E-20 159.8 38.9 355 147-557 26-409 (438)
3 4aps_A DI-OR tripeptide H+ sym 99.7 1.1E-14 3.7E-19 157.3 33.9 375 145-555 11-448 (491)
4 2gfp_A EMRD, multidrug resista 99.7 9.3E-17 3.2E-21 167.4 13.1 334 150-543 3-339 (375)
5 2cfq_A Lactose permease; trans 99.4 1.1E-12 3.6E-17 140.1 16.2 361 145-554 5-374 (417)
6 2xut_A Proton/peptide symporte 99.4 1.3E-11 4.4E-16 134.5 23.4 162 145-323 10-179 (524)
7 4gc0_A D-xylose-proton symport 98.9 5.6E-06 1.9E-10 88.7 34.5 114 425-543 305-419 (491)
8 3o7q_A L-fucose-proton symport 98.3 7.5E-05 2.6E-09 78.3 23.3 135 417-557 46-182 (438)
9 1pw4_A Glycerol-3-phosphate tr 98.1 9.8E-05 3.3E-09 77.6 17.8 163 145-325 250-416 (451)
10 4aps_A DI-OR tripeptide H+ sym 98.0 0.00025 8.6E-09 75.9 20.5 130 416-554 32-171 (491)
11 2gfp_A EMRD, multidrug resista 98.0 4.8E-05 1.6E-09 78.5 13.8 128 416-552 19-147 (375)
12 2xut_A Proton/peptide symporte 97.9 0.00042 1.4E-08 74.9 19.5 130 416-553 31-172 (524)
13 2cfq_A Lactose permease; trans 97.0 0.0059 2E-07 64.3 13.4 156 145-321 218-378 (417)
14 4gc0_A D-xylose-proton symport 96.8 0.035 1.2E-06 58.9 17.2 119 430-551 53-183 (491)
15 2kv5_A FST, putative uncharact 24.7 33 0.0011 23.1 1.6 18 302-319 4-21 (33)
No 1
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=99.84 E-value=1.3e-18 Score=184.88 Aligned_cols=377 Identities=11% Similarity=-0.003 Sum_probs=229.3
Q ss_pred CchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcccccceeeccCCchHHHHHHHHHHHHH
Q 007555 146 PEGLYALYACCLAGNLVEQLWNFAWPSAIALLHPSLLPVAVMGFFSKLILIVGGPLVGKLMDHSPRIPAYICLNTVQAAA 225 (598)
Q Consensus 146 ~r~f~~L~~gq~lS~~G~~i~~fAlpL~v~~lt~S~l~~av~~~~~~Lp~lL~gp~aGvlvDR~~Rr~vmi~~d~~q~~~ 225 (598)
.+.+..++.+.++..++..++...+|.+..+. -|....++...+..++.++.+|+.|.+.||++||++++.+.++..+.
T Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~~~~~~~ 105 (451)
T 1pw4_A 27 WQIFLGIFFGYAAYYLVRKNFALAMPYLVEQG-FSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAAV 105 (451)
T ss_dssp HHHHHHHHHHHHHHHHHHTSHHHHHHHTTSST-TCSSCHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-ccHhHHHHHHHHHHHHHHHHHHhHHHHHHhcCchHHHHHHHHHHHHH
Confidence 45677788899999999999999999998877 88888999999999999999999999999999999999887654333
Q ss_pred HHHHHHHHHHHhh-hccCCccchHHHHHHHHHHHHHHHHHHhhhhhhhccccceeeecCCCchhHHHHHHHHHHHHHHHH
Q 007555 226 QLLSAAMIIHAHT-VIPTSSSMLLHPWFFVLVLAGAVERLTGVALGVAVERDWAVLLAGINRPIALAKANAVLNRIDLLC 304 (598)
Q Consensus 226 v~ls~~~l~~~~~-~~~~~~~~l~~~l~vv~~llg~i~~l~~~a~~~aIerdwvp~Iv~~~~~~~L~~aNa~l~~id~~~ 304 (598)
.+ +..+... .. + .+.+++.-++.|.......++....+ .| ..++ ++..++++..+....+.
T Consensus 106 ~~----~~~~~~~~~~----~--~~~l~~~~~l~G~~~~~~~~~~~~~i-~~----~~~~---~~r~~~~~~~~~~~~~g 167 (451)
T 1pw4_A 106 ML----FMGFVPWATS----S--IAVMFVLLFLCGWFQGMGWPPCGRTM-VH----WWSQ---KERGGIVSVWNCAHNVG 167 (451)
T ss_dssp HH----HHHHCHHHHS----S--SSHHHHHHHHHHHHHHHTHHHHHHHH-HT----TCTT---THHHHHHHHHHHHHHHH
T ss_pred HH----HHHhhhhccc----c--HHHHHHHHHHHHHHhhhccchHHHHH-HH----HCCc---hhhhHHHHHHHHHHHHH
Confidence 11 1111000 11 1 13345555566666666666655433 34 4443 37899999999999999
Q ss_pred HHhhHHHHHHHHhhhc-hhHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccccccc-cccCCCCCCCCCCCccchhhh
Q 007555 305 EIAGASLFGILLSKYE-PVTCLKFAAGLIMWSLPVMIILTWFTNKISSGVLDRAKCSQ-SCCRTSNEGPVPDADNIVDVG 382 (598)
Q Consensus 305 ~i~GP~lgGlL~s~~~-~~~~l~~~~~~~~~S~~~~~l~~~li~rv~~~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 382 (598)
.++||.++|.++...+ ....+.+.....+... ++ ....+ ++.+++.+..+ ++.++.++.+.++..+ .+..
T Consensus 168 ~~~g~~~~~~l~~~~g~w~~~f~~~~~~~~~~~---~~---~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 239 (451)
T 1pw4_A 168 GGIPPLLFLLGMAWFNDWHAALYMPAFCAILVA---LF---AFAMM-RDTPQSCGLPPIEEYKNDYPDDYNEKAE-QELT 239 (451)
T ss_dssp HTSHHHHHHHHHHHTCCSTTCTHHHHHHHHHHH---HH---HHHHC-CCSSTTTCCCSCTTTCCC--------------C
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHH---HH---HHhhc-cCCHhhcCCCChhhhcccccccchhhhh-cccc
Confidence 9999999999988777 5443333322221111 11 11111 11111100000 0000000000000000 0000
Q ss_pred HHHHHHHHHHHhcCCchHHHHHHHHHHHHhhhhhhHHHHHHHHh-cCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhh--
Q 007555 383 IEAIKLGWKEYMQQPVLPASLAYVLLCLNVVLTPGSLMTAFLTQ-RGLNPSIIGGFSGLCASMGVAATFLSAYLVRRL-- 459 (598)
Q Consensus 383 ~~~i~eG~~~~~~~pvll~~l~~~lL~~~vll~f~~l~~~yl~~-lg~s~~~iG~~~g~gavgGLlGtl~~~~l~rrl-- 459 (598)
.++. .++..+++|.++.......++......+....+.|+.+ .|+++...|.+.+..++++++|.++.+++.+|+
T Consensus 240 ~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~ 317 (451)
T 1pw4_A 240 AKQI--FMQYVLPNKLLWYIAIANVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFR 317 (451)
T ss_dssp CTHH--HHHHTSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHBTTBSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTST
T ss_pred cccc--hHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 0111 14556778877654444333332223455566777776 799999999999999999999999999999998
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHhhhhhhhhhhhhhhhhccCCCccchhHHHHHHHHH
Q 007555 460 GILKAGAAGLIFQASLLAMAVAVYWSGSLSQQNPLLFFLCLIVLSRLGHMSYDIVGAQILQTGIPSSKANLIGTTEISVA 539 (598)
Q Consensus 460 g~~r~g~~~l~~q~~~L~~~v~~~~~g~~~~~~~~~~~~~~i~lsr~Gl~~fdl~~~~l~Q~~VP~~~rGRV~sv~~sl~ 539 (598)
|..+....+... ....+...+.... . .....+.....+.+++..........+.++.+|++.||+++|+.++..
T Consensus 318 ~~~~~~~~~~~~---~~~~~~~~~~~~~--~-~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 391 (451)
T 1pw4_A 318 GNRGATGVFFMT---LVTIATIVYWMNP--A-GNPTVDMICMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFG 391 (451)
T ss_dssp TCHHHHHHHHHH---HHHHHHHHTTSCC--T-TCHHHHHHHHHHHHHHHTHHHHHHHHHHHHTSCTTHHHHHHHHHHHHH
T ss_pred CCchhHHHHHHH---HHHHHHHHHHHhc--c-cCHHHHHHHHHHHHHHHhchHHHHHHHHHHHhchhhhhhHHHHHHHHH
Confidence 766554433221 1112222221111 0 011112222333344444556677889999999999999999999999
Q ss_pred HH-HH-HHHHHhhhhccCcc
Q 007555 540 SL-VE-SVMLGVAIIANDVS 557 (598)
Q Consensus 540 ~~-~~-ll~~~~~i~~~~~~ 557 (598)
++ .. +.+++.+.+.+..+
T Consensus 392 ~~~g~~~~~~~~g~l~~~~g 411 (451)
T 1pw4_A 392 YLGGSVAASAIVGYTVDFFG 411 (451)
T ss_dssp HHHHHHHHHHHHHHHHHSSC
T ss_pred HHHHHHHHHHHHHHHHHhcC
Confidence 88 64 55566677766544
No 2
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=99.77 E-value=2e-15 Score=159.80 Aligned_cols=355 Identities=10% Similarity=-0.018 Sum_probs=216.5
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcccccceeeccCCchHHHHHHHHHHHHHH
Q 007555 147 EGLYALYACCLAGNLVEQLWNFAWPSAIALLHPSLLPVAVMGFFSKLILIVGGPLVGKLMDHSPRIPAYICLNTVQAAAQ 226 (598)
Q Consensus 147 r~f~~L~~gq~lS~~G~~i~~fAlpL~v~~lt~S~l~~av~~~~~~Lp~lL~gp~aGvlvDR~~Rr~vmi~~d~~q~~~v 226 (598)
+.+..+....++..+...+....+|.+.-+..-|....++...+..+..++.+|+.|.++||++||++++.+.++..+.
T Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~g~r~~l~~~~~~~~~~- 104 (438)
T 3o7q_A 26 IPFALLCSLFFLWAVANNLNDILLPQFQQAFTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKLSYKAGIITGLFLYALG- 104 (438)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHTTHHHHHHHHHHSCHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcchHHHHHHHHHHHHH-
Confidence 3456677777888888888888888865554339999999999999999999999999999999999998887654332
Q ss_pred HHHHHHHHHHhhhccCCccchHHHHHHHHHHHHHHHHHHhhhhhhhccccceeeecCCCchhHHHHHHHHHHHHHHHHHH
Q 007555 227 LLSAAMIIHAHTVIPTSSSMLLHPWFFVLVLAGAVERLTGVALGVAVERDWAVLLAGINRPIALAKANAVLNRIDLLCEI 306 (598)
Q Consensus 227 ~ls~~~l~~~~~~~~~~~~~l~~~l~vv~~llg~i~~l~~~a~~~aIerdwvp~Iv~~~~~~~L~~aNa~l~~id~~~~i 306 (598)
..+.... ... .+ .+.+++..++.|.......++....+ .| ..+++ +..++++..+....+..+
T Consensus 105 ---~~~~~~~-~~~---~~--~~~l~~~~~l~G~~~~~~~~~~~~~~-~~----~~~~~---~r~~~~~~~~~~~~~g~~ 167 (438)
T 3o7q_A 105 ---AALFWPA-AEI---MN--YTLFLVGLFIIAAGLGCLETAANPFV-TV----LGPES---SGHFRLNLAQTFNSFGAI 167 (438)
T ss_dssp ---HHHHHHH-HHT---TC--HHHHHHHHHHHHHHHHHHHHHHHHHH-HH----SSCST---THHHHHHHHHHHHHHHHH
T ss_pred ---HHHHHhc-ccc---cc--HHHHHHHHHHHHhhHHHhhhhHHHHH-HH----HcCch---hHHHHHHHHHHHHHHHHH
Confidence 1111110 111 11 24455556667776666666554433 34 44443 678899999999999999
Q ss_pred hhHHHHHHHH-hhhch-------------------------hHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccccc
Q 007555 307 AGASLFGILL-SKYEP-------------------------VTCLKFAAGLIMWSLPVMIILTWFTNKISSGVLDRAKCS 360 (598)
Q Consensus 307 ~GP~lgGlL~-s~~~~-------------------------~~~l~~~~~~~~~S~~~~~l~~~li~rv~~~~l~~~~~~ 360 (598)
+||.+++.+. ...+. ........ ........ .......|+. +++.
T Consensus 168 ~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~---~~~~~~~~----~~~~~~~p~~--~~~~ 238 (438)
T 3o7q_A 168 IAVVFGQSLILSNVPHQSQDVLDKMSPEQLSAYKHSLVLSVQTPYMIIV---AIVLLVAL----LIMLTKFPAL--QSDN 238 (438)
T ss_dssp HHHHHTTHHHHTSSCCCCHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHH----HHHHCCCCCC--TTTC
T ss_pred HHHHHHHHHHhcccccccccccccCCcchhhhhhhhhhhhHHHHHHHHH---HHHHHHHH----HHHHHcCCcc--cccc
Confidence 9999999998 54432 11111111 11111111 1111111211 1100
Q ss_pred ccccCCCCCCCCCCCccchhhhHHHHHHHHHHHhcCCchHHHHHHHHHHHHhhhhhhHHHHHH-HHhc-CCChhHHHHHH
Q 007555 361 QSCCRTSNEGPVPDADNIVDVGIEAIKLGWKEYMQQPVLPASLAYVLLCLNVVLTPGSLMTAF-LTQR-GLNPSIIGGFS 438 (598)
Q Consensus 361 ~~~~~~~~~~~~~~~~~~~~~~~~~i~eG~~~~~~~pvll~~l~~~lL~~~vll~f~~l~~~y-l~~l-g~s~~~iG~~~ 438 (598)
+ ++ ++. ++.++.++..+++|.++..+....+++.....+...++.| +.+. |+++...|...
T Consensus 239 ~--------~~-~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 301 (438)
T 3o7q_A 239 H--------SD-AKQ--------GSFSASLSRLARIRHWRWAVLAQFCYVGAQTACWSYLIRYAVEEIPGMTAGFAANYL 301 (438)
T ss_dssp C--------CC-SST--------TSHHHHHHHHTTCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCHHHHHHHH
T ss_pred c--------cc-ccc--------cchhhhHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCcchhHHHHHH
Confidence 0 00 000 1234567778899987765554444433323445567778 7764 99999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHhhhhhhhhhhhhhh
Q 007555 439 GLCASMGVAATFLSAYLVRRLGILKAGAAGLIFQASLLAMAVAVYWSGSLSQQNPLLFFLCLIVLSRLGHMSYDIVGAQI 518 (598)
Q Consensus 439 g~gavgGLlGtl~~~~l~rrlg~~r~g~~~l~~q~~~L~~~v~~~~~g~~~~~~~~~~~~~~i~lsr~Gl~~fdl~~~~l 518 (598)
+...+++++|.++.+++.+|+|..+....+..... .+........ .....+ .+ .+..++.........++
T Consensus 302 ~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~----~~~~~~~~~~--~~~~~~-~~---~~~g~~~~~~~~~~~~~ 371 (438)
T 3o7q_A 302 TGTMVCFFIGRFTGTWLISRFAPHKVLAAYALIAM----ALCLISAFAG--GHVGLI-AL---TLCSAFMSIQYPTIFSL 371 (438)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHH----HHHHHHHHCC--HHHHHH-HH---HHHHHHHTTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHH----HHHHHHHHcC--CcHHHH-HH---HHHHHHHHHHHHHHHHH
Confidence 99999999999999999999998776654433221 1111111111 111111 11 11222333344566777
Q ss_pred hhccCCCccchhHHHHHHHHHHHH-HHHHHHhhhhccCcc
Q 007555 519 LQTGIPSSKANLIGTTEISVASLV-ESVMLGVAIIANDVS 557 (598)
Q Consensus 519 ~Q~~VP~~~rGRV~sv~~sl~~~~-~ll~~~~~i~~~~~~ 557 (598)
.++..|++ +++..+... .+.+. .+.+++.+.+.+...
T Consensus 372 ~~~~~~~~-~~~~~~~~~-~~~~g~~~~~~~~g~l~~~~g 409 (438)
T 3o7q_A 372 GIKNLGQD-TKYGSSFIV-MTIIGGGIVTPVMGFVSDAAG 409 (438)
T ss_dssp HHSSCGGG-HHHHHHHHH-HTTHHHHHHHHHHHHHHHHHT
T ss_pred HHhhcccc-ccchhhHHH-HHHHHHHHHHHHHHHHHHHhc
Confidence 78889877 888888776 44443 355666666655443
No 3
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}
Probab=99.71 E-value=1.1e-14 Score=157.29 Aligned_cols=375 Identities=14% Similarity=0.050 Sum_probs=207.6
Q ss_pred CCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----cC-ChhHHHHHHHHHHHHHHHcccccceeecc-CCchHHHHH
Q 007555 145 HPEGLYALYACCLAGNLVEQLWNFAWPSAIALL-----HP-SLLPVAVMGFFSKLILIVGGPLVGKLMDH-SPRIPAYIC 217 (598)
Q Consensus 145 r~r~f~~L~~gq~lS~~G~~i~~fAlpL~v~~l-----t~-S~l~~av~~~~~~Lp~lL~gp~aGvlvDR-~~Rr~vmi~ 217 (598)
+++.++.++...+...++-.....-++.|+... .+ |....+....+..+...+.+++.|.++|| ++||++++.
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~g~r~~~~~ 90 (491)
T 4aps_A 11 QPLGLSTLFMTEMWERFSYYGMRAILLYYMWFLISTGDLHITRATAASIMAIYASMVYLSGTIGGFVADRIIGARPAVFW 90 (491)
T ss_dssp CTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCHHHHHHH
T ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchHHHHH
Confidence 557889999999999999999988999999887 78 99999999999999999999999999999 899999988
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhccCCccchHHHHHHHHHHHHHHHHHHhhhhhhhccccceeeecCCCchhHHHHHHHHH
Q 007555 218 LNTVQAAAQLLSAAMIIHAHTVIPTSSSMLLHPWFFVLVLAGAVERLTGVALGVAVERDWAVLLAGINRPIALAKANAVL 297 (598)
Q Consensus 218 ~d~~q~~~v~ls~~~l~~~~~~~~~~~~~l~~~l~vv~~llg~i~~l~~~a~~~aIerdwvp~Iv~~~~~~~L~~aNa~l 297 (598)
+.++..+. .+...... + .+.+++..++.|.......++....+ .| +.+++ +....++.+..
T Consensus 91 ~~~~~~~~------~~~~~~~~-----~--~~~~~~~~~l~g~~~~~~~~~~~~~~-~~----~~~~~-~~~r~~~~~~~ 151 (491)
T 4aps_A 91 GGVLIMLG------HIVLALPF-----G--ASALFGSIILIIIGTGFLKPNVSTLV-GT----LYDEH-DRRRDAGFSIF 151 (491)
T ss_dssp HHHHHHHH------HHHHHSCC-----S--TTHHHHHHHHHHHHHHHHHHHHHHHH-HH----HSSSC-TTHHHHHHHHH
T ss_pred HHHHHHHH------HHHHHHhh-----h--HHHHHHHHHHHHHHHHhccchHHHHH-HH----HcCcc-cccceeeehHH
Confidence 76543222 11121111 1 13445555556665555555554433 34 33433 12467788888
Q ss_pred HHHHHHHHHhhHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccccccccccCCCCCCCCCCCcc
Q 007555 298 NRIDLLCEIAGASLFGILLSKYEPVTCLKFAAGLIMWSLPVMIILTWFTNKISSGVLDRAKCSQSCCRTSNEGPVPDADN 377 (598)
Q Consensus 298 ~~id~~~~i~GP~lgGlL~s~~~~~~~l~~~~~~~~~S~~~~~l~~~li~rv~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 377 (598)
+....+..++||.++|.+....|......+.....+...+.. +...+-..+ ++.++++ + +..++
T Consensus 152 ~~~~~~g~~~~~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~----~~~~~~~~~--~~~~~~~--------~--~~~~~ 215 (491)
T 4aps_A 152 VFGINLGAFIAPLIVGAAQEAAGYHVAFSLAAIGMFIGLLVY----YFGGKKTLD--PHYLRPT--------D--PLAPE 215 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHH----HHHHHTTCC--SCCSCCS--------C--CCSHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHH----HHhCccccc--ccccCCC--------C--ccccc
Confidence 999999999999999999987775543333322222211111 111111100 0000000 0 00000
Q ss_pred chhhhHHH----------------------------------HHH-------HHHH-----HhcCC--chHHHHHHHHHH
Q 007555 378 IVDVGIEA----------------------------------IKL-------GWKE-----YMQQP--VLPASLAYVLLC 409 (598)
Q Consensus 378 ~~~~~~~~----------------------------------i~e-------G~~~-----~~~~p--vll~~l~~~lL~ 409 (598)
..++..+. +.. .|+. ..+.+ .+........++
T Consensus 216 ~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 295 (491)
T 4aps_A 216 EVKPLLVKVSLAVAGFIAIIVVMNLVGWNSLPAYINLLTIVAIAIPVFYFAWMISSVKVTSTEHLRVVSYIPLFIAAVLF 295 (491)
T ss_dssp HHHHHHHHCCCCCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHHHC------------CTTHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhccCcccccchhhhhHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHHHHH
Confidence 00000000 000 0000 01111 122222222222
Q ss_pred HHhhhhhhHHHHHHHHh-cCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHH-----HHHHHHHH-HHHHHHHH
Q 007555 410 LNVVLTPGSLMTAFLTQ-RGLNPSIIGGFSGLCASMGVAATFLSAYLVRRLGILKAGA-----AGLIFQAS-LLAMAVAV 482 (598)
Q Consensus 410 ~~vll~f~~l~~~yl~~-lg~s~~~iG~~~g~gavgGLlGtl~~~~l~rrlg~~r~g~-----~~l~~q~~-~L~~~v~~ 482 (598)
+.........++.|..+ .+.+....|...+..+++.++++.+.+++.+|+|..+... .+...... ++.++...
T Consensus 296 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~ 375 (491)
T 4aps_A 296 WAIEEQGSVVLATFAAERVDSSWFPVSWFQSLNPLFIMLYTPFFAWLWTAWKKNQPSSPTKFAVGLMFAGLSFLLMAIPG 375 (491)
T ss_dssp HHHHGGGGTHHHHHHHHSCCCSSSCSGGGTTHHHHHHHHHHHHHHHHHHHTTTC---CHHHHHHHHHHHHHHHTTTHHHH
T ss_pred HHHHhhccHHHHHHHHHHhccCccCHHHHhccchHHHHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHHHHHHHHH
Confidence 22212334455667665 5666566777778888888888888888888887532211 11111100 00011110
Q ss_pred HhhcccccchhHHHHHHHHHHHhhhhhhhhhhhhhhhhccCCCccchhHHHHHHHHHHHHH-HHHHHhhhhccC
Q 007555 483 YWSGSLSQQNPLLFFLCLIVLSRLGHMSYDIVGAQILQTGIPSSKANLIGTTEISVASLVE-SVMLGVAIIAND 555 (598)
Q Consensus 483 ~~~g~~~~~~~~~~~~~~i~lsr~Gl~~fdl~~~~l~Q~~VP~~~rGRV~sv~~sl~~~~~-ll~~~~~i~~~~ 555 (598)
...+..... ....+....++..+|...+......+.++..|+++||++.|+.++...+.. +.+.+.+.+.+.
T Consensus 376 ~~~~~~~~~-~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~i~~~~~~~~~~~ 448 (491)
T 4aps_A 376 ALYGTSGKV-SPLWLVGSWALVILGEMLISPVGLSVTTKLAPKAFNSQMMSMWFLSSSVGSALNAQLVTLYNAK 448 (491)
T ss_dssp HHCCCCTTC-CTHHHHHHHHHHHHHHHTTTTHHHHHHHHHTTTTCSSSSTHHHHHHHHHHHHHHHHHGGGGGGS
T ss_pred HhcCCCCCc-cHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 010100000 111111223333344445566778899999999999999999998888775 444444555443
No 4
>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}
Probab=99.69 E-value=9.3e-17 Score=167.38 Aligned_cols=334 Identities=14% Similarity=0.056 Sum_probs=201.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcccccceeeccCCchHHHHHHHHHHHHHHHHH
Q 007555 150 YALYACCLAGNLVEQLWNFAWPSAIALLHPSLLPVAVMGFFSKLILIVGGPLVGKLMDHSPRIPAYICLNTVQAAAQLLS 229 (598)
Q Consensus 150 ~~L~~gq~lS~~G~~i~~fAlpL~v~~lt~S~l~~av~~~~~~Lp~lL~gp~aGvlvDR~~Rr~vmi~~d~~q~~~v~ls 229 (598)
..++.+.+++.++..++...+|.+..+..-|....+....+..++.++.+|+.|.+.||++||++++.+.++..+.
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~---- 78 (375)
T 2gfp_A 3 LMLVLLVAVGQMAQTIYIPAIADMARDLNVREGAVQSVMGAYLLTYGVSQLFYGPISDRVGRRPVILVGMSIFMLA---- 78 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTSSSTTHHHHHHHHHHHHHHHHHHTTHHHHHTTSCCCCCCHHHHHHHHHH----
T ss_pred HHHHHHHHHHHHHHHHHhhhhHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHH----
Confidence 4578899999999999999999876655449999999999999999999999999999999999998877654333
Q ss_pred HHHHHHHhhhccCCccchHHHHHHHHHHHHHHHHHHhhhhhhhccccceeeecCCCchhHHHHHHHHHHHHHHHHHHhhH
Q 007555 230 AAMIIHAHTVIPTSSSMLLHPWFFVLVLAGAVERLTGVALGVAVERDWAVLLAGINRPIALAKANAVLNRIDLLCEIAGA 309 (598)
Q Consensus 230 ~~~l~~~~~~~~~~~~~l~~~l~vv~~llg~i~~l~~~a~~~aIerdwvp~Iv~~~~~~~L~~aNa~l~~id~~~~i~GP 309 (598)
..+..+. . + .+.+++..++.|.......++....+ .| ..+++ +..++++..+....+..++||
T Consensus 79 ~~~~~~~--~-----~--~~~l~~~~~l~g~~~~~~~~~~~~~~-~~----~~~~~---~~~~~~~~~~~~~~~g~~~~~ 141 (375)
T 2gfp_A 79 TLVAVTT--S-----S--LTVLIAASAMQGMGTGVGGVMARTLP-RD----LYERT---QLRHANSLLNMGILVSPLLAP 141 (375)
T ss_dssp HHHHHHH--H-----H--HHHHHHHHHHHHHHHHHHHHHHHHHH-HH----HHHTS---SCCSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHh--c-----c--HHHHHHHHHHHHHHHHhhhhhHHHHH-HH----HCCHH---HHHHHHHHHHHHHHHHHHhhH
Confidence 1111111 1 1 23445555566666666666554433 33 33332 567899999999999999999
Q ss_pred HHHHHHHhhhchhHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccccccccccCCCCCCCCCCCccchhhhHHHHHHH
Q 007555 310 SLFGILLSKYEPVTCLKFAAGLIMWSLPVMIILTWFTNKISSGVLDRAKCSQSCCRTSNEGPVPDADNIVDVGIEAIKLG 389 (598)
Q Consensus 310 ~lgGlL~s~~~~~~~l~~~~~~~~~S~~~~~l~~~li~rv~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~eG 389 (598)
.++|.+....+......+.... ..+.. .......|+. ++.++ ++ ++ .+++
T Consensus 142 ~~~~~l~~~~~~~~~~~~~~~~---~~~~~-----~~~~~~~~~~---~~~~~-------~~-~~-----------~~~~ 191 (375)
T 2gfp_A 142 LIGGLLDTMWNWRACYLFLLVL---CAGVT-----FSMARWMPET---RPVDA-------PR-TR-----------LLTS 191 (375)
T ss_dssp HHHHHSSCHHHHHHHHHHHHHH---HHHHH-----CCCCCSSCCC---STTTC-------CC-CC-----------TTTC
T ss_pred HHHHHHHHhccHHHHHHHHHHH---HHHHH-----HHHHHHCccc---CCCCc-------cc-cc-----------HHHH
Confidence 9999998766543322221111 11100 1011111211 11000 00 00 0112
Q ss_pred HHHHhcCCchHHHHHHHHHHHHhhhhhhHHHHHHHHh-cCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHH
Q 007555 390 WKEYMQQPVLPASLAYVLLCLNVVLTPGSLMTAFLTQ-RGLNPSIIGGFSGLCASMGVAATFLSAYLVRRLGILKAGAAG 468 (598)
Q Consensus 390 ~~~~~~~pvll~~l~~~lL~~~vll~f~~l~~~yl~~-lg~s~~~iG~~~g~gavgGLlGtl~~~~l~rrlg~~r~g~~~ 468 (598)
++..+++|.++.......+++.....+....+.|+.+ .|+++...|.+.+..++++++|.++.+++.||.+. +. ..+
T Consensus 192 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~~~-~~-~~~ 269 (375)
T 2gfp_A 192 YKTLFGNSGFNCYLLMLIGGLAGIAAFEACSGVLMGAVLGLSSMTVSILFILPIPAAFFGAWFAGRPNKRFST-LM-WQS 269 (375)
T ss_dssp STHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSCSSHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHTTTTHHHH-HH-HHH
T ss_pred HHHHhcCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HH-HHH
Confidence 3334555655543333333222212333344446655 78899999999999999999999999999999876 22 111
Q ss_pred HHHHHHHHHHHHH--HHhhcccccchhHHHHHHHHHHHhhhhhhhhhhhhhhhhccCCCccchhHHHHHHHHHHHHH
Q 007555 469 LIFQASLLAMAVA--VYWSGSLSQQNPLLFFLCLIVLSRLGHMSYDIVGAQILQTGIPSSKANLIGTTEISVASLVE 543 (598)
Q Consensus 469 l~~q~~~L~~~v~--~~~~g~~~~~~~~~~~~~~i~lsr~Gl~~fdl~~~~l~Q~~VP~~~rGRV~sv~~sl~~~~~ 543 (598)
... +...+.. .+.... ......+....++..++.........++.|+.+| ++||+++|+.++..+...
T Consensus 270 ~~~---~~~~~~~~~~~~~~~---~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p-~~~g~~~g~~~~~~~~g~ 339 (375)
T 2gfp_A 270 VIC---CLLAGLLMWIPDWFG---VMNVWTLLVPAALFFFGAGMLFPLATSGAMEPFP-FLAGTAGALVGGLQNIGS 339 (375)
T ss_dssp HHH---HHHTSSSSSHHHHHH---HHHHHHHHHHHHHHHHHHHHTSSTTHHHHHTHHH-HHHHHHHHHHHHHHHHHH
T ss_pred HHH---HHHHHHHHHHHhhhc---cccHHHHHHHHHHHHHHHHHhhHHHHHHHHHhCC-cccchHHHHHHHHHHHHH
Confidence 110 0011111 000000 0011112222233334444567788899999999 899999999998877664
No 5
>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*
Probab=99.44 E-value=1.1e-12 Score=140.06 Aligned_cols=361 Identities=11% Similarity=0.014 Sum_probs=181.2
Q ss_pred CCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-ChhHHHHHHHHHHHHHHHcccccceeeccCCchHHHHHHHHHHH
Q 007555 145 HPEGLYALYACCLAGNLVEQLWNFAWPSAIALLHP-SLLPVAVMGFFSKLILIVGGPLVGKLMDHSPRIPAYICLNTVQA 223 (598)
Q Consensus 145 r~r~f~~L~~gq~lS~~G~~i~~fAlpL~v~~lt~-S~l~~av~~~~~~Lp~lL~gp~aGvlvDR~~Rr~vmi~~d~~q~ 223 (598)
++|+|+.+....++...+..+...-+|.|+.+..+ |....+....+..+..++.+|+.|.+.||++|||+++..-++-.
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~lsDr~Grr~~l~~~~~~~~ 84 (417)
T 2cfq_A 5 KNTNFWMFGLFFFFYFFIMGAYFPFFPIWLHDINHISKSDTGIIFAAISLFSLLFQPLFGLLSDKLGLRKYLLWIITGML 84 (417)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHTTTHHHHHHTTTCCCTTTSHHHHHHHHHHHHHHHHHHHHHHTTSTTCCHHHHHHHHTT
T ss_pred cccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHH
Confidence 67889988888888887877777778888877777 88889999988899999999999999999999998876543321
Q ss_pred HHHHHHHHHHH--HHhhhccCCccchHHHHHHHHHHHHHHHHHHhhhhhhhccccceeeecCCCchhHHHHHHHHHHHHH
Q 007555 224 AAQLLSAAMII--HAHTVIPTSSSMLLHPWFFVLVLAGAVERLTGVALGVAVERDWAVLLAGINRPIALAKANAVLNRID 301 (598)
Q Consensus 224 ~~v~ls~~~l~--~~~~~~~~~~~~l~~~l~vv~~llg~i~~l~~~a~~~aIerdwvp~Iv~~~~~~~L~~aNa~l~~id 301 (598)
+. ...... +...... . .+....+.+....+...+....+ .+|++.. +++-..+.+..+...
T Consensus 85 ~~---~~~~~~~~~~~~~~~---~-----~~~~~~~~~~~~g~~~~~~~~~~-~~~~~~~-----~~~~~~~~g~~~~~~ 147 (417)
T 2cfq_A 85 VM---FAPFFIFIFGPLLQY---N-----ILVGSIVGGIYLGFCFNAGAPAV-EAFIEKV-----SRRSNFEFGRARMFG 147 (417)
T ss_dssp SC---HHHHHHHTHHHHHHT---T-----CCHHHHGGGSSTTHHHHTTHHHH-HHHHHHH-----HHHHTCCHHHHSSST
T ss_pred HH---HHHHHHHHHHHHHHH---H-----HHHHHHHHHHHHHHHHhhhHHHH-HHHHHHh-----hhhcccchHHHHHHH
Confidence 11 001100 0000000 0 00111111111111111111111 1122111 001112234444455
Q ss_pred HHHHHhhHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccccccccccCCCCCCCCCCCccchhh
Q 007555 302 LLCEIAGASLFGILLSKYEPVTCLKFAAGLIMWSLPVMIILTWFTNKISSGVLDRAKCSQSCCRTSNEGPVPDADNIVDV 381 (598)
Q Consensus 302 ~~~~i~GP~lgGlL~s~~~~~~~l~~~~~~~~~S~~~~~l~~~li~rv~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 381 (598)
.+...+||.++|.+... +......+... ..+. . .......+|+.++ + .+++.++ ++ +.+ +.
T Consensus 148 ~~g~~~~~~l~~~l~~~-~~~~~f~~~~~---~~~~-~----~~~~~~~~~~~~~-~-~~~~~~~---~~--~~~---~~ 208 (417)
T 2cfq_A 148 CVGWALGASIVGIMFTI-NNQFVFWLGSG---CALI-L----AVLLFFAKTDAPS-S-ATVANAV---GA--NHS---AF 208 (417)
T ss_dssp TTHHHHHHHHHHHHHHH-CSHHHHTTTTT---TTTT-H----HHHSCSSCCCCSC-S-SCSSSSS---SS--CCC---CC
T ss_pred HHHHHHHHHHHHHHHHh-chhHHHHHHHH---HHHH-H----HHHHHHcCccccc-c-ccccccc---cc--ccc---cc
Confidence 66778999999999873 32221111110 0010 0 0111111121100 0 0000000 00 000 01
Q ss_pred hHHHHHHHHHHHhcCCchHHHHHHHHHHHHhhhhhhHHHHHHHHh-cC---CChhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007555 382 GIEAIKLGWKEYMQQPVLPASLAYVLLCLNVVLTPGSLMTAFLTQ-RG---LNPSIIGGFSGLCASMGVAATFLSAYLVR 457 (598)
Q Consensus 382 ~~~~i~eG~~~~~~~pvll~~l~~~lL~~~vll~f~~l~~~yl~~-lg---~s~~~iG~~~g~gavgGLlGtl~~~~l~r 457 (598)
..+ .++..+++|.++..+............+...++.|+.+ .+ .+...+|...+..++++++|.++.+++.+
T Consensus 209 ~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~d 284 (417)
T 2cfq_A 209 SLK----LALELFRQPKLWFLSLYVIGVSCTYDVFDQQFANFFTSFFATGEQGTRVFGYVTTMGELLNASIMFFAPLIIN 284 (417)
T ss_dssp CHH----HHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSSHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHH----HHHHHhcCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCChhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 112 34456677766543333222211111232334556543 22 33567788889999999999999999999
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHhhhhhhhhhhhhhhhhccCCCccchhHHHHH-H
Q 007555 458 RLGILKAGAAGLIFQASLLAMAVAVYWSGSLSQQNPLLFFLCLIVLSRLGHMSYDIVGAQILQTGIPSSKANLIGTTE-I 536 (598)
Q Consensus 458 rlg~~r~g~~~l~~q~~~L~~~v~~~~~g~~~~~~~~~~~~~~i~lsr~Gl~~fdl~~~~l~Q~~VP~~~rGRV~sv~-~ 536 (598)
|+|..+....+.... ..+...+.... +....+ . ...+..++...+......+..|..|++.||+..+.. +
T Consensus 285 r~g~~~~l~~~~~~~----~~~~~~~~~~~--~~~~~~-~--~~~l~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~ 355 (417)
T 2cfq_A 285 RIGGKNALLLAGTIM----SVRIIGSSFAT--SALEVV-I--LKTLHMFEVPFLLVGCFKYITSQFEVRFSATIYLVCFC 355 (417)
T ss_dssp HHCHHHHHHHHHHHH----HHHHHHHTTCC--SHHHHH-H--HTTHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHT
T ss_pred HhcHHHHHHHHHHHH----HHHHHHHHHhc--cHHHHH-H--HHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
Confidence 999877654433211 11111111111 111111 1 111111222234445567899999999999998884 5
Q ss_pred HHHHHHH-HHHHHhhhhcc
Q 007555 537 SVASLVE-SVMLGVAIIAN 554 (598)
Q Consensus 537 sl~~~~~-ll~~~~~i~~~ 554 (598)
+...+.. ..+.+.|.+.+
T Consensus 356 ~~~~lg~~~gp~l~G~l~~ 374 (417)
T 2cfq_A 356 FFKQLAMIFMSVLAGNMYE 374 (417)
T ss_dssp TTHHHHHHHHTHHHHTHHH
T ss_pred HHHhHHHHHhhhhHHHHHH
Confidence 5554442 45566665554
No 6
>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}
Probab=99.42 E-value=1.3e-11 Score=134.45 Aligned_cols=162 Identities=10% Similarity=-0.068 Sum_probs=112.7
Q ss_pred CCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-------ChhHHHHHHHHHHHHHHHcccccceeeccC-CchHHHH
Q 007555 145 HPEGLYALYACCLAGNLVEQLWNFAWPSAIALLHP-------SLLPVAVMGFFSKLILIVGGPLVGKLMDHS-PRIPAYI 216 (598)
Q Consensus 145 r~r~f~~L~~gq~lS~~G~~i~~fAlpL~v~~lt~-------S~l~~av~~~~~~Lp~lL~gp~aGvlvDR~-~Rr~vmi 216 (598)
+++.++.++...++..++.......+|.|+....+ |....+....+..+..++.++++|.++||+ +||+++.
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~~g~r~~~~ 89 (524)
T 2xut_A 10 WPRQIPYIIASEACERFSFYGMRNILTPFLMTALLLSIPEELRGAVAKDVFHSFVIGVYFFPLLGGWIADRFFGKYNTIL 89 (524)
T ss_dssp ---CCTHHHHHHHHHHHHHHHHHHHHHHHHHHSCSSCCSSSTTTTTHHHHHHHHHHHHHHTHHHHHHHHTTSSCSHHHHH
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHH
Confidence 56789999999999999999999999999877555 788889999999999999999999999999 9999988
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhccCCccchHHHHHHHHHHHHHHHHHHhhhhhhhccccceeeecCCCchhHHHHHHHH
Q 007555 217 CLNTVQAAAQLLSAAMIIHAHTVIPTSSSMLLHPWFFVLVLAGAVERLTGVALGVAVERDWAVLLAGINRPIALAKANAV 296 (598)
Q Consensus 217 ~~d~~q~~~v~ls~~~l~~~~~~~~~~~~~l~~~l~vv~~llg~i~~l~~~a~~~aIerdwvp~Iv~~~~~~~L~~aNa~ 296 (598)
.+.++..+. .. ...... .+ .+.+++..++.|.......++....+ .| ..++++........+.
T Consensus 90 ~~~~~~~~~----~~--~~~~~~----~~--~~~~~~~~~l~g~~~~~~~~~~~~~~-~~----~~~~~~r~~~~~~~~~ 152 (524)
T 2xut_A 90 WLSLIYCVG----HA--FLAIFE----HS--VQGFYTGLFLIALGSGGIKPLVSSFM-GD----QFDQSNKSLAQKAFDM 152 (524)
T ss_dssp HHHHHHHHH----HH--HHHHTS----SC--HHHHHHHHHHHHHHHHTTHHHHHHHH-HH----TCSTTTTTHHHHHHHH
T ss_pred HHHHHHHHH----HH--HHHHhc----cc--HHHHHHHHHHHHHhccccchhHHHHH-HH----HcCccchHHHHHHHHH
Confidence 776543221 11 111111 01 24455556666766666665554433 34 3343311123455555
Q ss_pred HHHHHHHHHHhhHHHHHHHHhhhchhH
Q 007555 297 LNRIDLLCEIAGASLFGILLSKYEPVT 323 (598)
Q Consensus 297 l~~id~~~~i~GP~lgGlL~s~~~~~~ 323 (598)
......+..++||.++|.+....|...
T Consensus 153 ~~~~~~~g~~~g~~~~~~l~~~~g~~~ 179 (524)
T 2xut_A 153 FYFTINFGSFFASLSMPLLLKNFGAAV 179 (524)
T ss_dssp HHHHHHHHHHHHHHTSTHHHHTSCHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhccccHHH
Confidence 888888999999999999988766543
No 7
>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*
Probab=98.87 E-value=5.6e-06 Score=88.69 Aligned_cols=114 Identities=16% Similarity=0.118 Sum_probs=67.8
Q ss_pred HhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHH-HHHHHHHhhcccccchhHHHHHHHHHH
Q 007555 425 TQRGLNPSIIGGFSGLCASMGVAATFLSAYLVRRLGILKAGAAGLIFQASLL-AMAVAVYWSGSLSQQNPLLFFLCLIVL 503 (598)
Q Consensus 425 ~~lg~s~~~iG~~~g~gavgGLlGtl~~~~l~rrlg~~r~g~~~l~~q~~~L-~~~v~~~~~g~~~~~~~~~~~~~~i~l 503 (598)
...+.+...........++.++.+++++.++.+|+|..+....+......++ .++... ..... ..............
T Consensus 305 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~Grr~~~~~~~~~~~~~~~~l~~~~-~~~~~-~~~~~~~~~~~~~~ 382 (491)
T 4gc0_A 305 KTLGASTDIALLQTIIVGVINLTFTVLAIMTVDKFGRKPLQIIGALGMAIGMFSLGTAF-YTQAP-GIVALLSMLFYVAA 382 (491)
T ss_dssp HHSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHHHHHH-HTTCC-HHHHHHHHHHHHHH
T ss_pred HhcCCCccchhhHHHHHHHHHHHHHHHHHHHHHhhcCcchhccchHHHHHHHHHHHHHH-hcccc-hHHHHHHHHHHHHH
Confidence 3567777777777777888899999999999999998776655433222211 111111 11111 01111111111111
Q ss_pred HhhhhhhhhhhhhhhhhccCCCccchhHHHHHHHHHHHHH
Q 007555 504 SRLGHMSYDIVGAQILQTGIPSSKANLIGTTEISVASLVE 543 (598)
Q Consensus 504 sr~Gl~~fdl~~~~l~Q~~VP~~~rGRV~sv~~sl~~~~~ 543 (598)
. + ..+......+..|..|.+.||...|+..+.+++..
T Consensus 383 ~--~-~~~~~~~~~~~~E~fPt~~R~~~~g~~~~~~~~~~ 419 (491)
T 4gc0_A 383 F--A-MSWGPVCWVLLSEIFPNAIRGKALAIAVAAQWLAN 419 (491)
T ss_dssp H--H-TTTTHHHHHHHHHSSCTTTHHHHHHHHHHHHHHHH
T ss_pred H--H-hHHHHHHHHHHHHhCCHhHHHHHHHHHHHHHHHHH
Confidence 1 1 12233445678899999999999999998888773
No 8
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=98.31 E-value=7.5e-05 Score=78.33 Aligned_cols=135 Identities=13% Similarity=0.023 Sum_probs=92.1
Q ss_pred hHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHhhcccccchhHHH
Q 007555 417 GSLMTAFLTQRGLNPSIIGGFSGLCASMGVAATFLSAYLVRRLGILKAGAAGLIFQASLLAMAVAVYWSGSLSQQNPLLF 496 (598)
Q Consensus 417 ~~l~~~yl~~lg~s~~~iG~~~g~gavgGLlGtl~~~~l~rrlg~~r~g~~~l~~q~~~L~~~v~~~~~g~~~~~~~~~~ 496 (598)
...++.+..+.|+++.++|++.++..++..++.+..+++.+|+|..+...++.........+........ ....
T Consensus 46 ~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~------~~~~ 119 (438)
T 3o7q_A 46 DILLPQFQQAFTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKLSYKAGIITGLFLYALGAALFWPAAEIM------NYTL 119 (438)
T ss_dssp HHHHHHHHHHSCCCSHHHHHHHHHHHHHHHTTHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHTT------CHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcchHHHHHHHHHHHHHHHHHHhccccc------cHHH
Confidence 3344555567899999999999999999999999999999999998876655432211111110001111 1222
Q ss_pred HHHHHHHHhhhhhhhhhhhhhhhhccCCCccchhHHHHHHHHHHHHHHHH-HHhhhhc-cCcc
Q 007555 497 FLCLIVLSRLGHMSYDIVGAQILQTGIPSSKANLIGTTEISVASLVESVM-LGVAIIA-NDVS 557 (598)
Q Consensus 497 ~~~~i~lsr~Gl~~fdl~~~~l~Q~~VP~~~rGRV~sv~~sl~~~~~ll~-~~~~i~~-~~~~ 557 (598)
++.+.++.++|...++.....++.+..|+++||+.++..++...+...++ .+.+.+. ....
T Consensus 120 l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~ 182 (438)
T 3o7q_A 120 FLVGLFIIAAGLGCLETAANPFVTVLGPESSGHFRLNLAQTFNSFGAIIAVVFGQSLILSNVP 182 (438)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHSSCSTTHHHHHHHHHHHHHHHHHHHHHHTTHHHHTSSC
T ss_pred HHHHHHHHHhhHHHhhhhHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 33334445556667788899999999999999999999998888876444 4445555 4433
No 9
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=98.07 E-value=9.8e-05 Score=77.63 Aligned_cols=163 Identities=13% Similarity=0.048 Sum_probs=111.9
Q ss_pred CCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-ChhHHHHHHHHHHHHHHHcccccceeeccC--CchHHHHHHHHH
Q 007555 145 HPEGLYALYACCLAGNLVEQLWNFAWPSAIALLHP-SLLPVAVMGFFSKLILIVGGPLVGKLMDHS--PRIPAYICLNTV 221 (598)
Q Consensus 145 r~r~f~~L~~gq~lS~~G~~i~~fAlpL~v~~lt~-S~l~~av~~~~~~Lp~lL~gp~aGvlvDR~--~Rr~vmi~~d~~ 221 (598)
+++.++.+....++..++......-+|.|+.+..+ |....+.+.....+..++.+++.|.+.||+ +||+++...-++
T Consensus 250 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~ 329 (451)
T 1pw4_A 250 PNKLLWYIAIANVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMT 329 (451)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHHHHHHHHBTTBSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHH
Confidence 67889999999999999998888889999888777 998899988888999999999999999999 898877654332
Q ss_pred HHHHHHHHHHHHHHHhhhccCCccchHHHHHHHHHHHHHHHHHHhhhhhhhccccceeeecCCCchhHHHHHHHHHHHHH
Q 007555 222 QAAAQLLSAAMIIHAHTVIPTSSSMLLHPWFFVLVLAGAVERLTGVALGVAVERDWAVLLAGINRPIALAKANAVLNRID 301 (598)
Q Consensus 222 q~~~v~ls~~~l~~~~~~~~~~~~~l~~~l~vv~~llg~i~~l~~~a~~~aIerdwvp~Iv~~~~~~~L~~aNa~l~~id 301 (598)
... +. ++.+ ...+ ... .+.+.+..++.|.......+.....+ .| .+++ ++..++++......
T Consensus 330 ~~~---~~--~~~~--~~~~-~~~--~~~~~~~~~~~g~~~~~~~~~~~~~~-~~----~~~~---~~~g~~~~~~~~~~ 391 (451)
T 1pw4_A 330 LVT---IA--TIVY--WMNP-AGN--PTVDMICMIVIGFLIYGPVMLIGLHA-LE----LAPK---KAAGTAAGFTGLFG 391 (451)
T ss_dssp HHH---HH--HHHT--TSCC-TTC--HHHHHHHHHHHHHHHTHHHHHHHHHH-HH----TSCT---THHHHHHHHHHHHH
T ss_pred HHH---HH--HHHH--HHhc-ccC--HHHHHHHHHHHHHHHhchHHHHHHHH-HH----Hhch---hhhhhHHHHHHHHH
Confidence 110 11 1111 1111 011 12233333444443222222221211 12 4554 37889999999999
Q ss_pred HH-HHHhhHHHHHHHHhhhchhHHH
Q 007555 302 LL-CEIAGASLFGILLSKYEPVTCL 325 (598)
Q Consensus 302 ~~-~~i~GP~lgGlL~s~~~~~~~l 325 (598)
.+ +..+||.++|.++...|.....
T Consensus 392 ~~~g~~~~~~~~g~l~~~~g~~~~~ 416 (451)
T 1pw4_A 392 YLGGSVAASAIVGYTVDFFGWDGGF 416 (451)
T ss_dssp HHHHHHHHHHHHHHHHHSSCSHHHH
T ss_pred HHHHHHHHHHHHHHHHHhcCcHHHH
Confidence 99 9999999999999987754433
No 10
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}
Probab=98.03 E-value=0.00025 Score=75.86 Aligned_cols=130 Identities=12% Similarity=0.010 Sum_probs=85.6
Q ss_pred hhHHHHHHHHh------cCCChhHHHHHHHHHHHHHHHHHHHHHHHHHh-hhhhHHHHHHHHHHHHHHHHHHHHHhhccc
Q 007555 416 PGSLMTAFLTQ------RGLNPSIIGGFSGLCASMGVAATFLSAYLVRR-LGILKAGAAGLIFQASLLAMAVAVYWSGSL 488 (598)
Q Consensus 416 f~~l~~~yl~~------lg~s~~~iG~~~g~gavgGLlGtl~~~~l~rr-lg~~r~g~~~l~~q~~~L~~~v~~~~~g~~ 488 (598)
....++.|+.+ .|+++.+.|++.+...++..++.+..+++.+| +|..+...++.... ..+........
T Consensus 32 ~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~g~r~~~~~~~~~~----~~~~~~~~~~~- 106 (491)
T 4aps_A 32 MRAILLYYMWFLISTGDLHITRATAASIMAIYASMVYLSGTIGGFVADRIIGARPAVFWGGVLI----MLGHIVLALPF- 106 (491)
T ss_dssp HHHHHHHHHHHHHHHTSCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHH----HHHHHHHHSCC-
T ss_pred HHHHHHHHHHhccchhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHH----HHHHHHHHHhh-
Confidence 44566677764 79999999999999999999999999999999 89888766554322 11211111111
Q ss_pred ccchhHHHHHHHHHHHhhhhhhhhhhhhhhhhccCCCcc--chhHHHHHHHHHHHHH-HHHHHhhhhcc
Q 007555 489 SQQNPLLFFLCLIVLSRLGHMSYDIVGAQILQTGIPSSK--ANLIGTTEISVASLVE-SVMLGVAIIAN 554 (598)
Q Consensus 489 ~~~~~~~~~~~~i~lsr~Gl~~fdl~~~~l~Q~~VP~~~--rGRV~sv~~sl~~~~~-ll~~~~~i~~~ 554 (598)
.... +..+.++.++|...+......++.+..|+++ ||+.++..++..++.. +.+.+.+.+.+
T Consensus 107 --~~~~--~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~ 171 (491)
T 4aps_A 107 --GASA--LFGSIILIIIGTGFLKPNVSTLVGTLYDEHDRRRDAGFSIFVFGINLGAFIAPLIVGAAQE 171 (491)
T ss_dssp --STTH--HHHHHHHHHHHHHHHHHHHHHHHHHHSSSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred --hHHH--HHHHHHHHHHHHHhccchHHHHHHHHcCcccccceeeehHHHHHHHHHHHHHHHHHHHHHh
Confidence 1112 1122333344555667788899999999999 6667776666666654 34444455543
No 11
>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}
Probab=98.01 E-value=4.8e-05 Score=78.48 Aligned_cols=128 Identities=5% Similarity=-0.013 Sum_probs=87.7
Q ss_pred hhHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHhhcccccchhHH
Q 007555 416 PGSLMTAFLTQRGLNPSIIGGFSGLCASMGVAATFLSAYLVRRLGILKAGAAGLIFQASLLAMAVAVYWSGSLSQQNPLL 495 (598)
Q Consensus 416 f~~l~~~yl~~lg~s~~~iG~~~g~gavgGLlGtl~~~~l~rrlg~~r~g~~~l~~q~~~L~~~v~~~~~g~~~~~~~~~ 495 (598)
+...++.+..+.|.++.++|++.++..++..++....+++.+|+|..+...++....... ........ ...
T Consensus 19 ~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~---~~~~~~~~------~~~ 89 (375)
T 2gfp_A 19 YIPAIADMARDLNVREGAVQSVMGAYLLTYGVSQLFYGPISDRVGRRPVILVGMSIFMLA---TLVAVTTS------SLT 89 (375)
T ss_dssp HHHHHHHHHTTSSSTTHHHHHHHHHHHHHHHHHHTTHHHHHTTSCCCCCCHHHHHHHHHH---HHHHHHHH------HHH
T ss_pred HhhhhHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHH---HHHHHHhc------cHH
Confidence 444555566678999999999999999999999999999999999877655543322111 11111111 112
Q ss_pred HHHHHHHHHhhhhhhhhhhhhhhhhccCCCccchhHHHHHHHHHHHHHHHHHHh-hhh
Q 007555 496 FFLCLIVLSRLGHMSYDIVGAQILQTGIPSSKANLIGTTEISVASLVESVMLGV-AII 552 (598)
Q Consensus 496 ~~~~~i~lsr~Gl~~fdl~~~~l~Q~~VP~~~rGRV~sv~~sl~~~~~ll~~~~-~i~ 552 (598)
.+..+.++.+++...+......+..+..|+++||+.++...........++... +.+
T Consensus 90 ~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l 147 (375)
T 2gfp_A 90 VLIAASAMQGMGTGVGGVMARTLPRDLYERTQLRHANSLLNMGILVSPLLAPLIGGLL 147 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSCCSHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHhhhhhHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence 222233334445556778889999999999999999999998888776444444 444
No 12
>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}
Probab=97.91 E-value=0.00042 Score=74.88 Aligned_cols=130 Identities=12% Similarity=0.027 Sum_probs=83.0
Q ss_pred hhHHHHHHHH-hcC------CChhHHHHHHHHHHHHHHHHHHHHHHHHHhh-hhhHHHHHHHHHHHHHHHHHHHHHhhcc
Q 007555 416 PGSLMTAFLT-QRG------LNPSIIGGFSGLCASMGVAATFLSAYLVRRL-GILKAGAAGLIFQASLLAMAVAVYWSGS 487 (598)
Q Consensus 416 f~~l~~~yl~-~lg------~s~~~iG~~~g~gavgGLlGtl~~~~l~rrl-g~~r~g~~~l~~q~~~L~~~v~~~~~g~ 487 (598)
....++.|+. +.| +++.+.|++.++..++.+++.+..+++.+|+ |..+...++.... ..+........
T Consensus 31 ~~~~l~~~l~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~~g~r~~~~~~~~~~----~~~~~~~~~~~ 106 (524)
T 2xut_A 31 MRNILTPFLMTALLLSIPEELRGAVAKDVFHSFVIGVYFFPLLGGWIADRFFGKYNTILWLSLIY----CVGHAFLAIFE 106 (524)
T ss_dssp HHHHHHHHHHHSCSSCCSSSTTTTTHHHHHHHHHHHHHHTHHHHHHHHTTSSCSHHHHHHHHHHH----HHHHHHHHHTS
T ss_pred HHHHHHHHHHHHhccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHH----HHHHHHHHHhc
Confidence 3455666776 478 9999999999999999999999999999999 9877765543321 11111111111
Q ss_pred cccchhHHHHHHHHHHHhhhhhhhhhhhhhhhhccCCCccchhHHHH---HHHHHHHHH-HHHHHhhhhc
Q 007555 488 LSQQNPLLFFLCLIVLSRLGHMSYDIVGAQILQTGIPSSKANLIGTT---EISVASLVE-SVMLGVAIIA 553 (598)
Q Consensus 488 ~~~~~~~~~~~~~i~lsr~Gl~~fdl~~~~l~Q~~VP~~~rGRV~sv---~~sl~~~~~-ll~~~~~i~~ 553 (598)
. . ...+..+.++.++|...+.....+++.+.+|+++||+..+. ..+..++.. +.+.+.+.+.
T Consensus 107 ~--~--~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~g~~~~~~l~ 172 (524)
T 2xut_A 107 H--S--VQGFYTGLFLIALGSGGIKPLVSSFMGDQFDQSNKSLAQKAFDMFYFTINFGSFFASLSMPLLL 172 (524)
T ss_dssp S--C--HHHHHHHHHHHHHHHHTTHHHHHHHHHHTCSTTTTTHHHHHHHHHHHHHHHHHHHHHHTSTHHH
T ss_pred c--c--HHHHHHHHHHHHHhccccchhHHHHHHHHcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 0 1 11122223334445556678889999999999999887766 555554443 3333334443
No 13
>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*
Probab=96.98 E-value=0.0059 Score=64.33 Aligned_cols=156 Identities=10% Similarity=-0.020 Sum_probs=81.9
Q ss_pred CCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC----hhHHHHHHHHHHHHHHHcccccceeeccCCchHHHHHHHH
Q 007555 145 HPEGLYALYACCLAGNLVEQLWNFAWPSAIALLHPS----LLPVAVMGFFSKLILIVGGPLVGKLMDHSPRIPAYICLNT 220 (598)
Q Consensus 145 r~r~f~~L~~gq~lS~~G~~i~~fAlpL~v~~lt~S----~l~~av~~~~~~Lp~lL~gp~aGvlvDR~~Rr~vmi~~d~ 220 (598)
+++.++.++...+....+-..+...+|.|.....+. ....+.......+..++..++.|.+.||++||++++..-+
T Consensus 218 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~l~~~~~ 297 (417)
T 2cfq_A 218 RQPKLWFLSLYVIGVSCTYDVFDQQFANFFTSFFATGEQGTRVFGYVTTMGELLNASIMFFAPLIINRIGGKNALLLAGT 297 (417)
T ss_dssp TCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSSHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHH
T ss_pred cCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcHHHHHHHHHH
Confidence 566676666654444444444444578777655442 2233455555555667778899999999999998765432
Q ss_pred HHHHHHHHHHHHHHHHhhhccCCccchHHHHHHHHHHHHHHHHHHhhhhhhhccccceeeecCCCchhHHHHHHHH-HHH
Q 007555 221 VQAAAQLLSAAMIIHAHTVIPTSSSMLLHPWFFVLVLAGAVERLTGVALGVAVERDWAVLLAGINRPIALAKANAV-LNR 299 (598)
Q Consensus 221 ~q~~~v~ls~~~l~~~~~~~~~~~~~l~~~l~vv~~llg~i~~l~~~a~~~aIerdwvp~Iv~~~~~~~L~~aNa~-l~~ 299 (598)
+.. + ..+.. ... .+ .+.+++..++.+.....+...... +++...++ +....+.+. ...
T Consensus 298 ~~~----~--~~~~~--~~~---~~--~~~~~~~~~l~~~~~~~~~~~~~~-----~~~~~~p~---~~~g~~~g~~~~~ 356 (417)
T 2cfq_A 298 IMS----V--RIIGS--SFA---TS--ALEVVILKTLHMFEVPFLLVGCFK-----YITSQFEV---RFSATIYLVCFCF 356 (417)
T ss_dssp HHH----H--HHHHH--TTC---CS--HHHHHHHTTHHHHHHHHHHHHHHH-----HHHHHSCH---HHHHHHHHHHHTT
T ss_pred HHH----H--HHHHH--HHh---cc--HHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHCCH---HHHHHHHHHHHHH
Confidence 211 1 11111 111 11 122222222222221122211111 11224442 234455555 366
Q ss_pred HHHHHHHhhHHHHHHHHhhhch
Q 007555 300 IDLLCEIAGASLFGILLSKYEP 321 (598)
Q Consensus 300 id~~~~i~GP~lgGlL~s~~~~ 321 (598)
...+..++||.++|.+++..|.
T Consensus 357 ~~~lg~~~gp~l~G~l~~~~g~ 378 (417)
T 2cfq_A 357 FKQLAMIFMSVLAGNMYESIGF 378 (417)
T ss_dssp THHHHHHHHTHHHHTHHHHSHH
T ss_pred HHhHHHHHhhhhHHHHHHhcCc
Confidence 6778899999999999886663
No 14
>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*
Probab=96.75 E-value=0.035 Score=58.88 Aligned_cols=119 Identities=10% Similarity=0.062 Sum_probs=75.7
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHhhcc------------cccchhHHHH
Q 007555 430 NPSIIGGFSGLCASMGVAATFLSAYLVRRLGILKAGAAGLIFQASLLAMAVAVYWSGS------------LSQQNPLLFF 497 (598)
Q Consensus 430 s~~~iG~~~g~gavgGLlGtl~~~~l~rrlg~~r~g~~~l~~q~~~L~~~v~~~~~g~------------~~~~~~~~~~ 497 (598)
++...|++.++..+|.++|+++++++.+|+|..+...++.....+ .++...+... .........+
T Consensus 53 ~~~~~g~~~s~~~~G~~iG~~~~G~laDr~GRk~~l~~~~~l~~i---~~i~~a~~~~~~~~~~~~~~~~~~~a~~~~~l 129 (491)
T 4gc0_A 53 ANSLLGFCVASALIGCIIGGALGGYCSNRFGRRDSLKIAAVLFFI---SGVGSAWPELGFTSINPDNTVPVYLAGYVPEF 129 (491)
T ss_dssp HHHHHHHHHHTHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH---HHHHHHCTTTTTSCSSSSSSCCGGGGGCHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH---HHHHHHHHhhhhhhhcchhHHHHHHhhhHHHH
Confidence 345788999999999999999999999999998877655432211 1111111000 0000112233
Q ss_pred HHHHHHHhhhhhhhhhhhhhhhhccCCCccchhHHHHHHHHHHHHHHHHHHhhh
Q 007555 498 LCLIVLSRLGHMSYDIVGAQILQTGIPSSKANLIGTTEISVASLVESVMLGVAI 551 (598)
Q Consensus 498 ~~~i~lsr~Gl~~fdl~~~~l~Q~~VP~~~rGRV~sv~~sl~~~~~ll~~~~~i 551 (598)
+.+=++.++|.-........++.|..|+++||+..+..........+...+.+.
T Consensus 130 ~~~R~l~G~g~G~~~~~~~~~i~E~~p~~~rg~~~~~~~~~~~~g~~~~~~~~~ 183 (491)
T 4gc0_A 130 VIYRIIGGIGVGLASMLSPMYIAELAPAHIRGKLVSFNQFAIIFGQLLVYCVNY 183 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTSCGGGHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhCCHHhhhhhHHhhhhhhhhhhhhhhhcch
Confidence 333333444444556677889999999999999999888776666555555543
No 15
>2kv5_A FST, putative uncharacterized protein RNAI; toxin-antitoxin, bacterial, toxin; NMR {Enterococcus faecalis}
Probab=24.72 E-value=33 Score=23.15 Aligned_cols=18 Identities=17% Similarity=0.386 Sum_probs=13.8
Q ss_pred HHHHHhhHHHHHHHHhhh
Q 007555 302 LLCEIAGASLFGILLSKY 319 (598)
Q Consensus 302 ~~~~i~GP~lgGlL~s~~ 319 (598)
.+..++||.+.|+++..+
T Consensus 4 i~~~IIaPivVGvvl~L~ 21 (33)
T 2kv5_A 4 LMSLVIAPIFVGLVLEMI 21 (33)
T ss_dssp THHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 467899999988877643
Done!