BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 007558
(598 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4B2G|A Chain A, Crystal Structure Of An Indole-3-acetic Acid Amido
Synthase From Vitis Vinifera Involved In Auxin
Homeostasis
pdb|4B2G|B Chain B, Crystal Structure Of An Indole-3-acetic Acid Amido
Synthase From Vitis Vinifera Involved In Auxin
Homeostasis
Length = 609
Score = 1026 bits (2653), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 481/598 (80%), Positives = 533/598 (89%)
Query: 1 MAIDSALPSPLGTPLCEKDAKALRFIEEMTRNADPVQERVLAAILSRNGETEYLRRFNLD 60
MA+D L SPLG EKDAKAL+FIEEMTRNAD VQERVLA ILSRNGETEYL+RF L+
Sbjct: 1 MAVDPILSSPLGPAASEKDAKALQFIEEMTRNADSVQERVLAEILSRNGETEYLKRFKLE 60
Query: 61 GATDRDTFKSKVPVVTYEDLQPEIQRIANGDRSAILSSHPVSEFLTSSGTSAGERKLMPT 120
G+T R+TFKSK+PV+ YEDLQPEIQRIANGDRSAILS+HP+SEFLTSSGTSAGERKLMPT
Sbjct: 61 GSTVRETFKSKIPVIKYEDLQPEIQRIANGDRSAILSAHPISEFLTSSGTSAGERKLMPT 120
Query: 121 IHEELDRRQLLFSLLMPVMNLYVPGLDKGKGLYFLFVKAETKTASGLLARPVLTSYYKSE 180
I EELDRRQ+L+SLLMPVMNLYVPGLDKGKGLYFLFVK+ET+T GLLARPVLTSYYKSE
Sbjct: 121 IQEELDRRQMLYSLLMPVMNLYVPGLDKGKGLYFLFVKSETRTPGGLLARPVLTSYYKSE 180
Query: 181 QFKTRPYDPFNVYTSPDEAILCVDSFQSMYIQMLCGLIMREEVLRVGAVFASGLLRAIRF 240
FKTRPYDP+NVYTSP+EAILC DSFQSMY QMLCG+ R++VLR+GAVFASGLLRAIRF
Sbjct: 181 HFKTRPYDPYNVYTSPNEAILCADSFQSMYTQMLCGIYERKQVLRLGAVFASGLLRAIRF 240
Query: 241 LQLNWKQLADDISAGTLNPNVTDPSIRKCMENILKPNPELAEFITKECSGEKWDGIITRI 300
LQLNW QL DI GTL+P +TDPS+R C+ +LKP+PELA+ + ECS + W+GIITRI
Sbjct: 241 LQLNWHQLTHDIRTGTLSPKITDPSVRNCVAGVLKPDPELADLVAGECSKDNWEGIITRI 300
Query: 301 WPNTKYLDVIVTGAMAQYIPTLDHYSGGLPLACTMYASSECFFGLNMKPMCKPSEVSYTI 360
WPNTKYLDVIVTGAMAQYIPTLD+YSGGLPLACTMYASSEC+FGLN+ PM KPSEVSYTI
Sbjct: 301 WPNTKYLDVIVTGAMAQYIPTLDYYSGGLPLACTMYASSECYFGLNLNPMSKPSEVSYTI 360
Query: 361 MPNMGYFEFLPHDXXXXXXXXXXXXRLVDLAHVQVGKQYELVVTTYAGLNRYRVGDILLV 420
MPNM YFEFLPH+ RLVDLAHV+VGK+YELV+TTYAGL RYRVGDIL V
Sbjct: 361 MPNMAYFEFLPHEHSSIPLSRDSPPRLVDLAHVEVGKEYELVITTYAGLYRYRVGDILRV 420
Query: 421 TGYYNSAPQFRFVKRKNVLLSIDSDKTDEAELQKGIDNASLLLKEFNASVIEYTSYADTT 480
TG++NSAPQF FV+RKNVLLSIDSDKTDEAELQK +DNAS LL+E N SV+EYTS+ADT
Sbjct: 421 TGFHNSAPQFHFVRRKNVLLSIDSDKTDEAELQKAVDNASKLLREVNTSVVEYTSFADTK 480
Query: 481 TIPGHYVIFWELLVKDAANSPSDEVLNQCCLVVEESLNSVYRQGRVADNSIGPLEIRVVK 540
TIPGHYVI+WELLVKD+ANSPSDE+L QCCL +EESLNSVYRQGRVADNSIGPLEIRVVK
Sbjct: 481 TIPGHYVIYWELLVKDSANSPSDELLGQCCLAMEESLNSVYRQGRVADNSIGPLEIRVVK 540
Query: 541 NGTFEELMDYAISRGASINQYKAPRCVSFTPILELLNGRVVSKHFSPAAPHWVPERRR 598
+GTFEELMDYAISRGASINQYK PRCV+FTPI+ELL+ RVVS HFSPA PHW P RRR
Sbjct: 541 SGTFEELMDYAISRGASINQYKVPRCVNFTPIMELLDSRVVSSHFSPALPHWTPARRR 598
>pdb|4EWV|A Chain A, Crystal Structure Of Gh3.12 In Complex With Ampcpp
pdb|4EWV|B Chain B, Crystal Structure Of Gh3.12 In Complex With Ampcpp
pdb|4EPM|A Chain A, Crystal Structure Of Arabidopsis Gh3.12 (Pbs3) In Complex
With Amp
pdb|4EQL|A Chain A, Crystal Structure Of Gh3.12 In Complex With Amp And
Salicylate
pdb|4EQL|B Chain B, Crystal Structure Of Gh3.12 In Complex With Amp And
Salicylate
Length = 581
Score = 556 bits (1432), Expect = e-158, Method: Compositional matrix adjust.
Identities = 269/568 (47%), Positives = 392/568 (69%), Gaps = 15/568 (2%)
Query: 26 IEEMTRNADPVQERVLAAILSRNGETEYLRRFNLDGATDRDTFKSKVPVVTYEDLQPEIQ 85
++++T N +Q+ +L I++ N +TEYL+RF +D D++ FK VP+V+YED++P +
Sbjct: 21 LKDLTSNVKSIQDNLLEEIITPNTKTEYLQRFLID-RFDKELFKKNVPIVSYEDIKPYLD 79
Query: 86 RIANGDRSAILSSHPVSEFLTSSGTSAGERKLMPTIHEELDRRQLLFSLLMPVMNLYVPG 145
R+ NG+ S ++S+ ++ FL SSGTS G +K+MP ++ LD ++ L M V+ +V G
Sbjct: 80 RVVNGESSDVISARTITGFLLSSGTSGGAQKMMPWNNKYLDNLTFIYDLRMQVITKHVKG 139
Query: 146 LDKGKGLYFLFVKAETKTASGLLARPVLTSYYKSEQFKTRPYDPFNVYTSPDEAILCVDS 205
+++GKG+ FLF K E+ T SGL AR +SY+KS+ FK RP + + YTSPDE ILC ++
Sbjct: 140 VEEGKGMMFLFTKQESMTPSGLPARVATSSYFKSDYFKNRPSNWYYSYTSPDEVILCPNN 199
Query: 206 FQSMYIQMLCGLIMREEVLRVGAVFASGLLRAIRFLQLNWKQLADDISAGTLNPNVTDPS 265
+S+Y +LCGL+ R+EV+R G++FAS ++RAI L+ +W++L +I +G L+ VTD
Sbjct: 200 TESLYCHLLCGLVQRDEVVRTGSIFASVMVRAIEVLKNSWEELCSNIRSGHLSNWVTDLG 259
Query: 266 IRKCMENIL-KPNPELAEFITKECSGEKWDGIITRIWPNTKYLDVIVTGAMAQYIPTLDH 324
+ + +L P PELA+ I + C+ W GI+ R+WPNTKY++ +VTG+M QY+P L++
Sbjct: 260 CQNSVSLVLGGPRPELADTIEEICNQNSWKGIVKRLWPNTKYIETVVTGSMGQYVPMLNY 319
Query: 325 YSGGLPLACTMYASSECFFGLNMKPMCKPSEVSYTIMPNMGYFEFLPHDXXXXXXXXXXX 384
Y LPL T Y SSE FG+N+ P+CKP +VSYT MPNM YFEF+P D
Sbjct: 320 YCNDLPLVSTTYGSSETTFGINLDPLCKPEDVSYTFMPNMSYFEFIPMDGGDKND----- 374
Query: 385 XRLVDLAHVQVGKQYELVVTTYAGLNRYRVGDILLVTGYYNSAPQFRFVKRKNVLLSIDS 444
+VDL V++G YE VVT +AGL R RVGDI+LVTG+YN+APQF+FV+R+NV+LSIDS
Sbjct: 375 --VVDLEDVKLGCTYEPVVTNFAGLYRMRVGDIVLVTGFYNNAPQFKFVRRENVVLSIDS 432
Query: 445 DKTDEAELQKGIDNASLLLKEFNASVIEYTSYADTTTIPGHYVIFWELLVKDAANSPS-- 502
DKT+E +L K + A L+L+ + ++TSYADT+T PGHYV++ E+ K+ +
Sbjct: 433 DKTNEEDLFKAVSQAKLVLESSGLDLKDFTSYADTSTFPGHYVVYLEVDTKEGEEKETAQ 492
Query: 503 ----DEVLNQCCLVVEESLNSVYRQGRVADNSIGPLEIRVVKNGTFEELMDYAISRGASI 558
+E L+ CCLV+EESL++VY++ R D SIGPLEIRVV+ GTF+ LMD+ IS+GAS
Sbjct: 493 FELDEEALSTCCLVMEESLDNVYKRCRFKDGSIGPLEIRVVRQGTFDSLMDFFISQGAST 552
Query: 559 NQYKAPRCVSFTPILELLNGRVVSKHFS 586
QYK PRC+ L++L VV+K FS
Sbjct: 553 GQYKTPRCIKSGKALQVLETCVVAKFFS 580
>pdb|4EQ4|A Chain A, Crystal Structure Of Seleno-Methionine Derivatized Gh3.12
pdb|4EQ4|B Chain B, Crystal Structure Of Seleno-Methionine Derivatized Gh3.12
Length = 581
Score = 536 bits (1380), Expect = e-152, Method: Compositional matrix adjust.
Identities = 263/568 (46%), Positives = 382/568 (67%), Gaps = 15/568 (2%)
Query: 26 IEEMTRNADPVQERVLAAILSRNGETEYLRRFNLDGATDRDTFKSKVPVVTYEDLQPEIQ 85
++++T N +Q+ +L I++ N +TEYL+RF +D D++ FK VP+V+YED++P +
Sbjct: 21 LKDLTSNVKSIQDNLLEEIITPNTKTEYLQRFLID-RFDKELFKKNVPIVSYEDIKPYLD 79
Query: 86 RIANGDRSAILSSHPVSEFLTSSGTSAGERKLMPTIHEELDRRQLLFSLLMPVMNLYVPG 145
R+ NG+ S ++S+ ++ FL SSGTS G +K P ++ LD ++ L V+ +V G
Sbjct: 80 RVVNGESSDVISARTITGFLLSSGTSGGAQKXXPWNNKYLDNLTFIYDLRXQVITKHVKG 139
Query: 146 LDKGKGLYFLFVKAETKTASGLLARPVLTSYYKSEQFKTRPYDPFNVYTSPDEAILCVDS 205
+++GKG FLF K E+ T SGL AR +SY+KS+ FK RP + + YTSPDE ILC ++
Sbjct: 140 VEEGKGXXFLFTKQESXTPSGLPARVATSSYFKSDYFKNRPSNWYYSYTSPDEVILCPNN 199
Query: 206 FQSMYIQMLCGLIMREEVLRVGAVFASGLLRAIRFLQLNWKQLADDISAGTLNPNVTDPS 265
+S+Y +LCGL+ R+EV+R G++FAS +RAI L+ +W++L +I +G L+ VTD
Sbjct: 200 TESLYCHLLCGLVQRDEVVRTGSIFASVXVRAIEVLKNSWEELCSNIRSGHLSNWVTDLG 259
Query: 266 IRKCMENIL-KPNPELAEFITKECSGEKWDGIITRIWPNTKYLDVIVTGAMAQYIPTLDH 324
+ + +L P PELA+ I + C+ W GI+ R+WPNTKY++ +VTG+ QY+P L++
Sbjct: 260 CQNSVSLVLGGPRPELADTIEEICNQNSWKGIVKRLWPNTKYIETVVTGSXGQYVPXLNY 319
Query: 325 YSGGLPLACTMYASSECFFGLNMKPMCKPSEVSYTIMPNMGYFEFLPHDXXXXXXXXXXX 384
Y LPL T Y SSE FG+N+ P+CKP +VSYT PN YFEF+P D
Sbjct: 320 YCNDLPLVSTTYGSSETTFGINLDPLCKPEDVSYTFXPNXSYFEFIPXDGGDKND----- 374
Query: 385 XRLVDLAHVQVGKQYELVVTTYAGLNRYRVGDILLVTGYYNSAPQFRFVKRKNVLLSIDS 444
+VDL V++G YE VVT +AGL R RVGDI+LVTG+YN+APQF+FV+R+NV+LSIDS
Sbjct: 375 --VVDLEDVKLGCTYEPVVTNFAGLYRXRVGDIVLVTGFYNNAPQFKFVRRENVVLSIDS 432
Query: 445 DKTDEAELQKGIDNASLLLKEFNASVIEYTSYADTTTIPGHYVIFWELLVKDAANSPS-- 502
DKT+E +L K + A L+L+ + ++TSYADT+T PGHYV++ E+ K+ +
Sbjct: 433 DKTNEEDLFKAVSQAKLVLESSGLDLKDFTSYADTSTFPGHYVVYLEVDTKEGEEKETAQ 492
Query: 503 ----DEVLNQCCLVVEESLNSVYRQGRVADNSIGPLEIRVVKNGTFEELMDYAISRGASI 558
+E L+ CCLV EESL++VY++ R D SIGPLEIRVV+ GTF+ L D+ IS+GAS
Sbjct: 493 FELDEEALSTCCLVXEESLDNVYKRCRFKDGSIGPLEIRVVRQGTFDSLXDFFISQGAST 552
Query: 559 NQYKAPRCVSFTPILELLNGRVVSKHFS 586
QYK PRC+ L++L VV+K FS
Sbjct: 553 GQYKTPRCIKSGKALQVLETCVVAKFFS 580
>pdb|4EPL|A Chain A, Crystal Structure Of Arabidopsis Thaliana Gh3.11 (Jar1) In
Complex With Ja-Ile
Length = 581
Score = 411 bits (1056), Expect = e-115, Method: Compositional matrix adjust.
Identities = 225/569 (39%), Positives = 333/569 (58%), Gaps = 17/569 (2%)
Query: 26 IEEMTRNADPVQERVLAAILSRNGETEYLRRFNLDG-ATD-RDTFKSKVPVVTYEDLQPE 83
+EMTRNA VQ++ L IL +N YL+ L+G ATD + FKS VP+VT +L+P
Sbjct: 23 FDEMTRNAHQVQKQTLKEILLKNQSAIYLQNCGLNGNATDPEEAFKSMVPLVTDVELEPY 82
Query: 84 IQRIANGDRSAILSSHPVSEFLTSSGTSAGERKLMPTIHEELDRRQLLFSLLMPVMNLYV 143
I+R+ +GD S IL+ HPV SSGTS G K +P E ++ LF N
Sbjct: 83 IKRMVDGDTSPILTGHPVPAISLSSGTSQGRPKFIPFTDELMENTLQLFRTAFAFRNRDF 142
Query: 144 PGLDKGKGLYFLFVKAETKTASGLLARPVLTSYYKSEQFKTRPYDPFNVYTSPDEAILCV 203
P D GK L F+F + + G+ T+ Y++ FK + SPDE I
Sbjct: 143 PIDDNGKALQFIFSSKQYISTGGVPVGTATTNVYRNPNFKAGMKSITSPSCSPDEVIFSP 202
Query: 204 DSFQSMYIQMLCGLIMREEVLRVGAVFASGLLRAIRFLQLNWKQLADDISAGTLNPNVTD 263
D Q++Y +L G++ R++V V AVFA GL+ A R + W+++ DI G L+ +T
Sbjct: 203 DVHQALYCHLLSGILFRDQVQYVFAVFAHGLVHAFRTFEQVWEEIVTDIKDGVLSNRITV 262
Query: 264 PSIRKCMENILKPNPELAEFITKEC-SGEKWDGIITRIWPNTKYLDVIVTGAMAQYIPTL 322
PS+R M +L PNPELAE I +C S W G+I ++PN KY+ I+TG+M Y+P L
Sbjct: 263 PSVRTAMSKLLTPNPELAETIRTKCMSLSNWYGLIPALFPNAKYVYGIMTGSMEPYVPKL 322
Query: 323 DHYSGGLPLACTMYASSECFFGLNMKPMCKPSEVSYTIMPNMGYFEFLPHDXXXXXXXXX 382
HY+G LPL Y SSE + N+ P P E ++ ++PN+GYFEFLP
Sbjct: 323 RHYAGDLPLVSHDYGSSEGWIAANVTPRLSPEEATFAVIPNLGYFEFLP-----VSETGE 377
Query: 383 XXXRLVDLAHVQVGKQYELVVTTYAGLNRYRVGDILLVTGYYNSAPQFRFVKRKNVLLSI 442
+ V L V++G++YE+V+T YAGL RYR+GD++ V G+YN+ PQ +F+ R+N++LSI
Sbjct: 378 GEEKPVGLTQVKIGEEYEVVITNYAGLYRYRLGDVVKVIGFYNNTPQLKFICRRNLILSI 437
Query: 443 DSDKTDEAELQKGIDNASLLLKEFNASVIEYTSYADTTTIPGHYVIFWELLVKDAANSPS 502
+ DK E +LQ +++A+ L E VI+++SY D +T PGHY IFWE+ + +
Sbjct: 438 NIDKNTERDLQLSVESAAKRLSEEKIEVIDFSSYIDVSTDPGHYAIFWEI-----SGETN 492
Query: 503 DEVLNQCCLVVEES-LNSVYRQGRVADNSIGPLEIRVVKNGTFEELMDYAISRGASINQY 561
++VL CC ++ + +++ Y R +IG LE+RVV GTF ++ ++ + G+S Q+
Sbjct: 493 EDVLQDCCNCLDRAFIDAGYVSSRKC-KTIGALELRVVAKGTFRKIQEHFLGLGSSAGQF 551
Query: 562 KAPRCV--SFTPILELLNGRVVSKHFSPA 588
K PRCV S +L++L VVS +FS A
Sbjct: 552 KMPRCVKPSNAKVLQILCENVVSSYFSTA 580
>pdb|1ZXM|A Chain A, Human Topo Iia Atpase/amp-pnp
pdb|1ZXM|B Chain B, Human Topo Iia Atpase/amp-pnp
pdb|1ZXN|A Chain A, Human Dna Topoisomerase Iia AtpaseADP
pdb|1ZXN|B Chain B, Human Dna Topoisomerase Iia AtpaseADP
pdb|1ZXN|C Chain C, Human Dna Topoisomerase Iia AtpaseADP
pdb|1ZXN|D Chain D, Human Dna Topoisomerase Iia AtpaseADP
Length = 400
Score = 30.4 bits (67), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 30/55 (54%), Gaps = 6/55 (10%)
Query: 475 SYADTTTIPGHYVIFWELLVKDAANSPSDEVLNQCCLVV----EESLNSVYRQGR 525
+Y + T +PG Y IF E+LV A N D ++ C+ V E +L S++ G+
Sbjct: 43 NYREVTFVPGLYKIFDEILVNAADNKQRDPKMS--CIRVTIDPENNLISIWNNGK 95
>pdb|2V31|A Chain A, Structure Of First Catalytic Cysteine Half-Domain Of Mouse
Ubiquitin-Activating Enzyme
Length = 112
Score = 29.6 bits (65), Expect = 4.6, Method: Composition-based stats.
Identities = 18/55 (32%), Positives = 27/55 (49%), Gaps = 7/55 (12%)
Query: 523 QGRVADNSIGPLEIRVVKNGTFE-----ELMDYAISRGASINQYKAPRCVSFTPI 572
QG + N P+EI+V+ TF DY RG ++Q K P+ +SF +
Sbjct: 54 QGMIQLNGCQPMEIKVLGPYTFSICDTSNFSDYI--RGGIVSQVKVPKKISFKSL 106
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.136 0.402
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 17,460,683
Number of Sequences: 62578
Number of extensions: 721334
Number of successful extensions: 1681
Number of sequences better than 100.0: 6
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 1662
Number of HSP's gapped (non-prelim): 8
length of query: 598
length of database: 14,973,337
effective HSP length: 104
effective length of query: 494
effective length of database: 8,465,225
effective search space: 4181821150
effective search space used: 4181821150
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 54 (25.4 bits)