Query 007558
Match_columns 598
No_of_seqs 177 out of 867
Neff 7.2
Searched_HMMs 29240
Date Mon Mar 25 04:46:24 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007558.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/007558hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4b2g_A GH3-1 auxin conjugating 100.0 2E-135 5E-140 1131.6 48.9 598 1-598 1-598 (609)
2 4eql_A 4-substituted benzoates 100.0 6E-131 2E-135 1093.8 43.6 566 13-586 8-580 (581)
3 4epl_A Jasmonic acid-amido syn 100.0 6E-130 2E-134 1083.1 50.4 564 14-589 11-581 (581)
4 3qov_A Phenylacetate-coenzyme 99.9 2.9E-23 9.8E-28 224.7 22.8 389 25-546 10-421 (436)
5 2y4o_A Phenylacetate-coenzyme 99.9 4.8E-22 1.7E-26 215.5 24.5 386 31-546 23-427 (443)
6 2y27_A Phenylacetate-coenzyme 99.9 1.7E-22 6E-27 218.6 20.7 315 31-459 21-355 (437)
7 3hgu_A EHPF; phenazine, antibi 99.6 1.3E-15 4.5E-20 160.9 12.3 306 36-444 22-367 (369)
8 3etc_A AMP-binding protein; ad 99.6 2.4E-13 8.3E-18 152.5 26.1 128 307-458 343-496 (580)
9 2d1s_A Luciferase, luciferin 4 99.5 5.4E-13 1.8E-17 148.5 25.6 151 277-458 290-462 (548)
10 3e7w_A D-alanine--poly(phospho 99.5 1.6E-12 5.4E-17 143.3 26.8 149 277-458 241-419 (511)
11 3ni2_A 4-coumarate:COA ligase; 99.5 4.7E-13 1.6E-17 148.4 21.0 130 307-458 299-455 (536)
12 3fce_A D-alanine--poly(phospho 99.5 5.7E-13 2E-17 146.7 21.5 128 307-458 263-420 (512)
13 4fuq_A Malonyl COA synthetase; 99.5 1.3E-12 4.3E-17 143.9 24.1 130 307-458 270-420 (503)
14 1t5h_X 4-chlorobenzoyl COA lig 99.5 1.3E-12 4.4E-17 143.8 23.8 154 276-458 250-423 (504)
15 3rix_A Luciferase, luciferin 4 99.5 4.6E-13 1.6E-17 149.0 17.7 153 277-459 288-461 (550)
16 1mdb_A 2,3-dihydroxybenzoate-A 99.5 1.6E-12 5.6E-17 144.3 21.8 149 277-458 279-451 (539)
17 2v7b_A Benzoate-coenzyme A lig 99.5 1.8E-12 6.3E-17 143.3 20.8 128 307-458 302-450 (529)
18 3ivr_A Putative long-chain-fat 99.5 2.3E-13 7.8E-18 149.8 13.3 130 307-459 274-422 (509)
19 1pg4_A Acetyl-COA synthetase; 99.5 7E-12 2.4E-16 142.6 25.9 226 307-580 380-645 (652)
20 3kxw_A Saframycin MX1 syntheta 99.5 8.1E-13 2.8E-17 147.8 17.5 63 392-459 393-480 (590)
21 3o83_A Peptide arylation enzym 99.5 4.4E-13 1.5E-17 149.0 15.1 151 277-459 288-461 (544)
22 3c5e_A Acyl-coenzyme A synthet 99.4 5.4E-12 1.9E-16 141.2 23.8 128 307-458 324-477 (570)
23 3l8c_A D-alanine--poly(phospho 99.4 3.8E-13 1.3E-17 148.4 13.9 129 307-458 266-424 (521)
24 3g7s_A Long-chain-fatty-acid-- 99.4 2.1E-12 7.1E-17 143.7 19.9 153 277-458 275-460 (549)
25 3nyq_A Malonyl-COA ligase; A/B 99.4 3.7E-12 1.3E-16 140.3 20.8 131 307-458 274-427 (505)
26 3ite_A SIDN siderophore synthe 99.4 1.4E-12 4.6E-17 145.4 17.0 131 307-459 296-449 (562)
27 3rg2_A Enterobactin synthase c 99.4 1.4E-12 4.8E-17 147.3 16.8 152 277-458 281-455 (617)
28 3gqw_A Fatty acid AMP ligase; 99.4 7.4E-12 2.5E-16 139.4 21.3 63 392-459 405-483 (576)
29 3r44_A Fatty acyl COA syntheta 99.4 4.9E-12 1.7E-16 139.7 18.3 126 307-458 286-434 (517)
30 4gr5_A Non-ribosomal peptide s 99.4 1.9E-12 6.5E-17 144.7 15.0 148 277-459 310-491 (570)
31 1ry2_A Acetyl-coenzyme A synth 99.4 1.8E-11 6.1E-16 139.6 22.3 228 305-578 384-659 (663)
32 3tsy_A Fusion protein 4-coumar 99.4 2.5E-12 8.6E-17 152.7 15.7 152 277-459 325-503 (979)
33 3ipl_A 2-succinylbenzoate--COA 99.4 4.5E-11 1.5E-15 131.1 23.4 140 277-458 258-419 (501)
34 1amu_A GRSA, gramicidin synthe 99.3 5.5E-11 1.9E-15 132.8 21.7 129 307-458 295-451 (563)
35 4dg8_A PA1221; ANL superfamily 99.3 9.6E-12 3.3E-16 140.7 14.3 130 307-458 278-440 (620)
36 1v25_A Long-chain-fatty-acid-C 99.2 3.1E-11 1E-15 134.1 12.7 128 307-459 295-457 (541)
37 4gs5_A Acyl-COA synthetase (AM 99.2 7E-11 2.4E-15 124.6 13.5 117 307-459 150-272 (358)
38 2vsq_A Surfactin synthetase su 99.1 2.5E-10 8.4E-15 139.6 15.7 129 307-458 722-882 (1304)
39 3t5a_A Long-chain-fatty-acid-- 98.4 1.6E-06 5.5E-11 93.9 13.5 28 99-127 183-210 (480)
40 3lax_A Phenylacetate-coenzyme 97.1 0.0012 4E-08 56.8 7.5 93 435-546 2-94 (109)
41 3gxs_A Phenylacetate-coenzyme 96.9 0.0021 7.3E-08 55.3 7.9 94 434-546 1-94 (109)
42 3onr_A Protein transport prote 21.6 2.5E+02 0.0087 21.9 6.4 48 446-494 16-64 (72)
No 1
>4b2g_A GH3-1 auxin conjugating enzyme; signaling protein, ignaling protein, adenylate, amino acid conjugation, plant growth; HET: V1N; 2.40A {Vitis vinifera}
Probab=100.00 E-value=1.6e-135 Score=1131.55 Aligned_cols=598 Identities=82% Similarity=1.310 Sum_probs=533.0
Q ss_pred CCccCCCCCCCCCCcccccHHHHHHHHHHhhCHHHHHHHHHHHHHHhcCCChhhHhcCCCCCCCHHHHhhcCCCcccccc
Q 007558 1 MAIDSALPSPLGTPLCEKDAKALRFIEEMTRNADPVQERVLAAILSRNGETEYLRRFNLDGATDRDTFKSKVPVVTYEDL 80 (598)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~Q~~~L~~iL~~~~~T~ygr~~gf~~i~s~edf~~~vPl~~Yed~ 80 (598)
|+.+...+|++.-+..+++++.++.||++++|+.++|+++|++||++|++|+|||+|||++|++++||+++|||++|||+
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~l~~~e~~~~~~~~~Q~~~L~~lL~~~~~T~~gr~~gf~~i~~~~dF~~~VPv~~Yedl 80 (609)
T 4b2g_A 1 MAVDPILSSPLGPAASEKDAKALQFIEEMTRNADSVQERVLAEILSRNGETEYLKRFKLEGSTVRETFKSKIPVIKYEDL 80 (609)
T ss_dssp ---------------CHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHSTTSHHHHTTCCTTCCSHHHHHHHSCCBCHHHH
T ss_pred CCccccccCchhhhcccchHHHHHHHHHHHcCHHHHHHHHHHHHHHHhcCChHHHhcCCCCCCCHHHHHHhCCCccHHHH
Confidence 67778888999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHcCCCcccccCCccceeecccccCCCCcccccCChHHHHHHHHHHHHHHHHHhhcCCCCCCCceEEEEecccc
Q 007558 81 QPEIQRIANGDRSAILSSHPVSEFLTSSGTSAGERKLMPTIHEELDRRQLLFSLLMPVMNLYVPGLDKGKGLYFLFVKAE 160 (598)
Q Consensus 81 ~p~ier~~~Ge~~~ll~~~pi~~f~~TSGTT~G~~K~IP~T~~~~~~~~~~~~~~~~~~~~~~p~~~~gk~l~~~~~~~~ 160 (598)
+||||||++||.++|||++||.+|++|||||+|++|+||+|+++++.+..++++|+.++++.+|.++.||.|++++++.+
T Consensus 81 ~p~ieRi~~Ge~~~il~~~~i~~f~~SSGTT~gk~K~IP~t~~~l~~~~~~~~~~~~~~~~~~p~~~~Gk~l~l~~~~~~ 160 (609)
T 4b2g_A 81 QPEIQRIANGDRSAILSAHPISEFLTSSGTSAGERKLMPTIQEELDRRQMLYSLLMPVMNLYVPGLDKGKGLYFLFVKSE 160 (609)
T ss_dssp HHHHHHHHTTCCSSSSCSSCCCEEEEEEEEETTEEEEEEECTTHHHHHHHHHHHHHHHHHHHSCCGGGSEEEECCCCCCC
T ss_pred HHHHHHHhcCCCCCccCCCCCCeEEeCCCCCCCCceeeecCHHHHHHHHHHHHHHHHHHHhcCCcccCCCeEEEcccCCc
Confidence 99999999999878999999999999999999999999999999999888899999999998998888999999878888
Q ss_pred cccCCCceeecccccccccccccCCCCCCCccccCchhhhccCChhhHHHHHHHhhhccccceeEEEeccHHHHHHHHHH
Q 007558 161 TKTASGLLARPVLTSYYKSEQFKTRPYDPFNVYTSPDEAILCVDSFQSMYIQMLCGLIMREEVLRVGAVFASGLLRAIRF 240 (598)
Q Consensus 161 ~~t~~Gip~g~~s~~~~~~~~~~~~~~~~~~~~~~P~~v~~~~d~~~~~Y~~Ll~~L~~~~~v~~i~~~~~~~ll~~~~~ 240 (598)
..|++|+|+|++|+.++++.+|+++|.+|...|++|.+++.++|..|++||||||||.++++|+.|+++|+++++++++.
T Consensus 161 ~~t~~Gi~~g~~s~~~~~s~~f~~~p~~~~~~~~sP~~~i~~~D~~~~~Y~~Ll~~L~~~~~v~~lsa~fa~~ll~~~~~ 240 (609)
T 4b2g_A 161 TRTPGGLLARPVLTSYYKSEHFKTRPYDPYNVYTSPNEAILCADSFQSMYTQMLCGIYERKQVLRLGAVFASGLLRAIRF 240 (609)
T ss_dssp EECTTSCEEECHHHHHHTSHHHHTCCCCTTCCBSSCHHHHHCSCHHHHHHHHHHHHHHTGGGEEEEEEEEHHHHHHHHHH
T ss_pred ccCCCCcccccchhhhhccchhhccccchhhcccCcHHHhcCcCHHHHHHHHHHHHhhcccccceeeehhHHHHHHHHHH
Confidence 88999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHcccCCCCCCChhhhhhhhhccCCCHHHHHHHHHHhccCCCcccccccCCCCceeEEEEeCchhhhHH
Q 007558 241 LQLNWKQLADDISAGTLNPNVTDPSIRKCMENILKPNPELAEFITKECSGEKWDGIITRIWPNTKYLDVIVTGAMAQYIP 320 (598)
Q Consensus 241 l~~~w~~l~~dI~~gt~~~~i~~~~~r~~l~~~l~~~p~~A~~L~~~~~~~~~~g~~~~lWP~l~~l~~~~~g~~~~y~~ 320 (598)
|+++|++||+||++|+++++++++++|+++++.++|+|++|++|+++|.+.+|.|++++|||||++|.||++|+|++|++
T Consensus 241 L~~~Weel~~dI~~gtl~~~it~~~~r~a~~~~lsp~~~la~~l~~~~~~~~~~g~i~~lWPnlk~l~~~~tG~~~~Y~~ 320 (609)
T 4b2g_A 241 LQLNWHQLTHDIRTGTLSPKITDPSVRNCVAGVLKPDPELADLVAGECSKDNWEGIITRIWPNTKYLDVIVTGAMAQYIP 320 (609)
T ss_dssp HHHHHHHHHHHHHHTCCCTTCCCHHHHHHTTTTCCCCHHHHHHHHHHHTSSCCTTTHHHHSTTCCEEEEECSGGGGGGHH
T ss_pred HHHHHHHHHHHHHhccCCcCCCCHHHHHHHhcCCCcCHHHHHHHHHHhCCCccccCHHHhCCCCcEEEEEccCChHHHHH
Confidence 99999999999999999999999999999999999999999999999998778999999999999999999999999999
Q ss_pred HHHhhcCCCCeeccccccccccccccCCCCCCCCCCceeeecCCeEEEeecCCCCCCCCCCCCCCccccccccCCCCeEE
Q 007558 321 TLDHYSGGLPLACTMYASSECFFGLNMKPMCKPSEVSYTIMPNMGYFEFLPHDPNSPPLSPESPPRLVDLAHVQVGKQYE 400 (598)
Q Consensus 321 ~l~~~~~g~~v~~~~ygaSEg~~~i~~~~~~~~~~~~~~l~~~~~ffEFip~~~~~~~~~~~~~~~~v~~~eve~G~~ye 400 (598)
+|++++|++|+++.+|+||||+||+|++|.|+++..+|+|+|+.+||||||+++.+.+.+++..+++|+++|||+|++||
T Consensus 321 ~l~~~~g~~p~~~~~Y~ASEg~~gi~~~p~~~p~~~~~~L~p~~~ffEFIP~~~~~~~~~~~~~~~~v~l~eVe~G~~Ye 400 (609)
T 4b2g_A 321 TLDYYSGGLPLACTMYASSECYFGLNLNPMSKPSEVSYTIMPNMAYFEFLPHEHSSIPLSRDSPPRLVDLAHVEVGKEYE 400 (609)
T ss_dssp HHHHHHTSCCEECCEEECSSCEEEECSCTTSCGGGCCEEECTTSCEEEEEEGGGTTSCCCSSSCCCCEEGGGCCTTCEEE
T ss_pred HHHHHcCCCccccCcccccceeeeeecCCCCCcccCceeecCCcEEEEEEeccccccccccCCCCccccHhHcCCCCeEE
Confidence 99999999999999999999999999999999888899999999999999987641000012345699999999999999
Q ss_pred EEEcccccccccccCCEEEEeeeeCCCCeEEEEeecCceecccccccCHHHHHHHHHHHHHHhhhcCCeEEeEEEeecCC
Q 007558 401 LVVTTYAGLNRYRVGDILLVTGYYNSAPQFRFVKRKNVLLSIDSDKTDEAELQKGIDNASLLLKEFNASVIEYTSYADTT 480 (598)
Q Consensus 401 lvvTt~~GL~RYr~GDvV~v~gf~~~~P~i~f~gR~~~~l~~~GEki~e~~v~~av~~a~~~l~~~g~~l~~f~~~~d~~ 480 (598)
|||||++||||||+||+|+|+||++++|+|+|+||++++||++||||+|++|++||.+|++.|+++|+.|.|||+++|.+
T Consensus 401 lViTt~~GL~RYr~GD~v~v~~f~~~~p~i~~~gR~~~~l~~~Geki~~~~v~~av~~a~~~l~~~g~~l~eft~~~d~~ 480 (609)
T 4b2g_A 401 LVITTYAGLYRYRVGDILRVTGFHNSAPQFHFVRRKNVLLSIDSDKTDEAELQKAVDNASKLLREVNTSVVEYTSFADTK 480 (609)
T ss_dssp EEEECTTSCCSEEEEEEEEEEEEETTEEEEEEEEETTCCBCSSSCCBCHHHHHHHHHHHHHGGGGTTEEEEEEEEEEECS
T ss_pred EehhhhhhhhheecCCEEEEeecCCCCcEEEEEEecCCeEEccccCCCHHHHHHHHHHHHHhhhccCCeEEEEEEecCCC
Confidence 99999999999999999999999999999999999999999999999999999999999987878999999999999888
Q ss_pred CCCceEEEEEEEeecccCCCCChHHHHHHHHHHHHHhChhhHhccccCCccCCeEEEEeCCChHHHHHHHHHhcCCCCCC
Q 007558 481 TIPGHYVIFWELLVKDAANSPSDEVLNQCCLVVEESLNSVYRQGRVADNSIGPLEIRVVKNGTFEELMDYAISRGASINQ 560 (598)
Q Consensus 481 ~~p~~Y~l~~E~e~~~~~~~~~~~~l~~~~~~ld~~Ln~~Y~~~R~~~g~l~p~~v~~v~~gtF~~~~~~~~~~G~~~~Q 560 (598)
+.||||+||||+++.+....++++.+++||..||++||++|+.+|.++|+|+||+|++|++|+|++|+++++++|+++||
T Consensus 481 ~~p~Hyv~~wEl~~~~~~~~~~~~~l~~~~~~LD~~LN~~Y~~~R~~~~~L~pl~v~~v~~GtF~~~~~~~~~~G~~~gQ 560 (609)
T 4b2g_A 481 TIPGHYVIYWELLVKDSANSPSDELLGQCCLAMEESLNSVYRQGRVADNSIGPLEIRVVKSGTFEELMDYAISRGASINQ 560 (609)
T ss_dssp SSSCEEEEEEEEEESCGGGCCCHHHHHHHHHHHHHHSCHHHHHHHHTSCCSCCCEEEEECTTCSCC--------------
T ss_pred CCCCcEEEEEEEecccccCCCCHHHHHHHHHHHHHHhCHHHHHHhhcCCccCCcEEEEeCCCcHHHHHHHHHhCCCCCCC
Confidence 88999999999974211123567899999999999999999999977789999999999999999999999999999999
Q ss_pred CCCCcccCCHhHHHHHhccccceeccCCCCCCCCCCCC
Q 007558 561 YKAPRCVSFTPILELLNGRVVSKHFSPAAPHWVPERRR 598 (598)
Q Consensus 561 ~K~Pr~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~ 598 (598)
||+|||+++++++++|+++||++|||+++|.|+|+++|
T Consensus 561 ~K~PR~~~~~~~~~~L~~~v~~~~~s~~~~~~~~~~~~ 598 (609)
T 4b2g_A 561 YKVPRCVNFTPIMELLDSRVVSSHFSPALPHWTPARRR 598 (609)
T ss_dssp --CCSSCC--CCHHHHHTTEEEEEECCSCCCCCSCCC-
T ss_pred cCCCcccCCHHHHHHHHhcccccccCCCCCCCCcccch
Confidence 99999999999999999999999999999999999875
No 2
>4eql_A 4-substituted benzoates-glutamate ligase GH3.12; firefly luciferase family, acyl adenylase, amino acid conjug ligase; HET: AMP SAL; 1.80A {Arabidopsis thaliana} PDB: 4epm_A* 4eq4_A* 4ewv_A*
Probab=100.00 E-value=6.1e-131 Score=1093.84 Aligned_cols=566 Identities=48% Similarity=0.868 Sum_probs=473.9
Q ss_pred CCcccccHHHHHHHHHHhhCHHHHHHHHHHHHHHhcCCChhhHhcCCCCCCCHHHHhhcCCCcccccchHHHHHHHcCCC
Q 007558 13 TPLCEKDAKALRFIEEMTRNADPVQERVLAAILSRNGETEYLRRFNLDGATDRDTFKSKVPVVTYEDLQPEIQRIANGDR 92 (598)
Q Consensus 13 ~~~~~~~~~~~~~~e~~~~~~~~~Q~~~L~~iL~~~~~T~ygr~~gf~~i~s~edf~~~vPl~~Yed~~p~ier~~~Ge~ 92 (598)
++..+++++.++.||++++||.++|+++|++||+.|++|+|||+| |++|++++|||++|||++|||++|||||+++||.
T Consensus 8 ~~~~~~~~~~~~~~e~~~~~~~~vQ~~vL~~iL~~n~~Teygk~~-f~~i~~~~~F~~~VPi~~Yedl~pyIeRi~~Ge~ 86 (581)
T 4eql_A 8 KPIFDINETFEKQLKDLTSNVKSIQDNLLEEIITPNTKTEYLQRF-LIDRFDKELFKKNVPIVSYEDIKPYLDRVVNGES 86 (581)
T ss_dssp ------CHHHHHHHHHHHHCHHHHHHHHHHHHHHHHTTSHHHHHT-TCCSCCHHHHHHHSCCBCHHHHHHHHHHHHTTCC
T ss_pred ccccCCcHHHHHHHHHHHcCHHHHHHHHHHHHHHhhccCHHHHHH-hhcCCCHHHHHHhCCCccHHHHHHHHHHHHcCCC
Confidence 366788899999999999999999999999999999999999999 9999999999999999999999999999999998
Q ss_pred cccccCCccceeecccccCCCCcccccCChHHHHHHHHHHHHHHHHHhhcCCCCCCCceEEEEecccccccCCCceeecc
Q 007558 93 SAILSSHPVSEFLTSSGTSAGERKLMPTIHEELDRRQLLFSLLMPVMNLYVPGLDKGKGLYFLFVKAETKTASGLLARPV 172 (598)
Q Consensus 93 ~~ll~~~pi~~f~~TSGTT~G~~K~IP~T~~~~~~~~~~~~~~~~~~~~~~p~~~~gk~l~~~~~~~~~~t~~Gip~g~~ 172 (598)
++|||++|+.+|++|||||+|++|+||+|+++++.+..++++|+.++++.+|.++.||.|++++...+..|++|+|+|++
T Consensus 87 ~~iL~~~pi~~F~~SSGTT~g~~K~IP~T~e~l~~~~~~~~~~~~~~~~~~p~~~~Gk~l~l~~~~~~~~t~~G~~~g~~ 166 (581)
T 4eql_A 87 SDVISARTITGFLLSSGTSGGAQKMMPWNNKYLDNLTFIYDLRMQVITKHVKGVEEGKGMMFLFTKQESMTPSGLPARVA 166 (581)
T ss_dssp GGGTCSSCCCEEEEEEEEETTEEEEEEECHHHHHHHHHHHHHHHHHHHHHCCSCTTSEEEECCCCCCCEECTTSCEEECH
T ss_pred CcccCCCCCCeEEeCCCCCCCCccccccCHHHHHHHHHHHHHHHHHHHhcCCccccCCEEEEeccCCcccCCCCeeeccc
Confidence 79999999999999999999999999999999999888899999999998998888999999887778889999999999
Q ss_pred cccccccccccCCCCCCCccccCchhhhccCChhhHHHHHHHhhhccccceeEEEeccHHHHHHHHHHHHHHHHHHHHHH
Q 007558 173 LTSYYKSEQFKTRPYDPFNVYTSPDEAILCVDSFQSMYIQMLCGLIMREEVLRVGAVFASGLLRAIRFLQLNWKQLADDI 252 (598)
Q Consensus 173 s~~~~~~~~~~~~~~~~~~~~~~P~~v~~~~d~~~~~Y~~Ll~~L~~~~~v~~i~~~~~~~ll~~~~~l~~~w~~l~~dI 252 (598)
|+.++++.+|+++|.+|...|++|.+++.++|..|++||||||||.++++|+.|+++|+++++++++.|+++|+++|+||
T Consensus 167 s~~~~~~~~f~~~p~~~~~~~~~P~~~i~~~d~~~~~Y~~ll~~L~~~~~v~~isa~fa~~ll~~~~~L~~~weel~~dI 246 (581)
T 4eql_A 167 TSSYFKSDYFKNRPSNWYYSYTSPDEVILCPNNTESLYCHLLCGLVQRDEVVRTGSIFASVMVRAIEVLKNSWEELCSNI 246 (581)
T ss_dssp HHHHHTSHHHHTCCCSGGGCBSSCHHHHHCSCHHHHHHHHHHHHHHTGGGEEEEEEEEHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhhhhcchhhcccchhhhcccCchHhhcCCCHHHHHHHHHHHHhhcccccceeeehhHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HcccCCCCCCChhhhhhhhhccC-CCHHHHHHHHHHhccCCCcccccccCCCCceeEEEEeCchhhhHHHHHhhcCCCCe
Q 007558 253 SAGTLNPNVTDPSIRKCMENILK-PNPELAEFITKECSGEKWDGIITRIWPNTKYLDVIVTGAMAQYIPTLDHYSGGLPL 331 (598)
Q Consensus 253 ~~gt~~~~i~~~~~r~~l~~~l~-~~p~~A~~L~~~~~~~~~~g~~~~lWP~l~~l~~~~~g~~~~y~~~l~~~~~g~~v 331 (598)
++|+++++++++++|++|.+.|+ |+|++|++|++.|.+.+|.|++++|||||++|+||++|||++|+++|++++|++|+
T Consensus 247 ~~gtl~~~it~~~~r~~~~~~L~~P~p~~A~~l~~~~~~~~~~g~i~~lWPnl~~l~~~~~G~~~~Y~~~l~~~~g~~p~ 326 (581)
T 4eql_A 247 RSGHLSNWVTDLGCQNSVSLVLGGPRPELADTIEEICNQNSWKGIVKRLWPNTKYIETVVTGSMGQYVPMLNYYCNDLPL 326 (581)
T ss_dssp HHTCCCTTCCCHHHHHHHHHHHCSCCHHHHHHHHHHHTSSCCTTHHHHHSTTCCEEEEECSGGGGGGHHHHHHHHTTCCE
T ss_pred HhCCCcccCcChHHHHHHHHHhcCCCHHHHHHHHHHhcCCCccCCHHHhCCCCcEEEEEcCCChHHHHHHHHHHcCCCcc
Confidence 99999999999999999999998 99999999999999877889999999999999999999999999999999999999
Q ss_pred eccccccccccccccCCCCCCCCCCceeeecCCeEEEeecCCCCCCCCCCCCCCccccccccCCCCeEEEEEcccccccc
Q 007558 332 ACTMYASSECFFGLNMKPMCKPSEVSYTIMPNMGYFEFLPHDPNSPPLSPESPPRLVDLAHVQVGKQYELVVTTYAGLNR 411 (598)
Q Consensus 332 ~~~~ygaSEg~~~i~~~~~~~~~~~~~~l~~~~~ffEFip~~~~~~~~~~~~~~~~v~~~eve~G~~yelvvTt~~GL~R 411 (598)
++.+|+||||+||+|+++.|+++..+|+|+|+.+||||||+++.+ .+++|+++|||+|++|||||||++||||
T Consensus 327 ~~~~Y~ASEg~~gi~~~p~~~~~~~~~~L~~~~~ffEFip~~~~~-------~~~~v~l~eVe~G~~YelViTt~~GL~R 399 (581)
T 4eql_A 327 VSTTYGSSETTFGINLDPLCKPEDVSYTFMPNMSYFEFIPMDGGD-------KNDVVDLEDVKLGCTYEPVVTNFAGLYR 399 (581)
T ss_dssp ECCEEECSSCEEEECSCTTSCGGGCCEEECTTSSEEEEEECSTTC-------CSSCEEGGGCCTTCEEEEEEECSSSCCS
T ss_pred ccCccccccceeeeccCCCCCcccCceeecCCcEEEEEEeccccC-------CCcEeCHHHcCCCceEEEEEeeccceee
Confidence 999999999999999999999877899999999999999987642 3469999999999999999999999999
Q ss_pred cccCCEEEEeeeeCCCCeEEEEeecCceecccccccCHHHHHHHHHHHHHHhhhcCCeEEeEEEeecCCCCCceEEEEEE
Q 007558 412 YRVGDILLVTGYYNSAPQFRFVKRKNVLLSIDSDKTDEAELQKGIDNASLLLKEFNASVIEYTSYADTTTIPGHYVIFWE 491 (598)
Q Consensus 412 Yr~GDvV~v~gf~~~~P~i~f~gR~~~~l~~~GEki~e~~v~~av~~a~~~l~~~g~~l~~f~~~~d~~~~p~~Y~l~~E 491 (598)
||+||+|+|+||++++|+|+|+||.+++||++||||+|++|++||.+|++.|+++|+.|.|||+++|.++.||||+||||
T Consensus 400 Yr~GD~v~v~~f~~~~p~i~f~gR~~~~l~~~Gekl~~~~v~~al~~a~~~l~~~g~~l~eft~~~~~~~~p~Hy~~~we 479 (581)
T 4eql_A 400 MRVGDIVLVTGFYNNAPQFKFVRRENVVLSIDSDKTNEEDLFKAVSQAKLVLESSGLDLKDFTSYADTSTFPGHYVVYLE 479 (581)
T ss_dssp EECCEEEEEEEEETTEEEEEEEEETTEEECSSSCCEEHHHHHHHHHHC--------------CEEEECSSSSBEEEEECC
T ss_pred EEcCCEEEEcccCCCCcEEEEEEecCCEEEeeeeECCHHHHHHHHHHHHHhhhhcCCEEEEEEEecCCCCCCCeEEEEEE
Confidence 99999999999999999999999999999999999999999999999987777799999999999988888999999999
Q ss_pred Eeecc------cCCCCChHHHHHHHHHHHHHhChhhHhccccCCccCCeEEEEeCCChHHHHHHHHHhcCCCCCCCCCCc
Q 007558 492 LLVKD------AANSPSDEVLNQCCLVVEESLNSVYRQGRVADNSIGPLEIRVVKNGTFEELMDYAISRGASINQYKAPR 565 (598)
Q Consensus 492 ~e~~~------~~~~~~~~~l~~~~~~ld~~Ln~~Y~~~R~~~g~l~p~~v~~v~~gtF~~~~~~~~~~G~~~~Q~K~Pr 565 (598)
+++.+ ...+++++++++||..||++||++|+.+|.++|+|+||+|++|++|+|++|+++++++|+++||||+||
T Consensus 480 l~~~~~~~~~~~~~~~~~~~l~~~~~~LD~~LN~~Y~~~R~~~~~L~pl~i~~v~~GtF~~~~~~~~~~G~~~gQ~K~PR 559 (581)
T 4eql_A 480 VDTKEGEEKETAQFELDEEALSTCCLVMEESLDNVYKRCRFKDGSIGPLEIRVVRQGTFDSLMDFFISQGASTGQYKTPR 559 (581)
T ss_dssp ---------------CCHHHHHHHHHHHHHTSCHHHHHHHHTTCCBCCCEEEC---------------------------
T ss_pred EecccccccccccCCCCHHHHHHHHHHHHHHhCHHHHHHHhcCCccCCcEEEEeCCCcHHHHHHHHHhCCCCCCCcCCCc
Confidence 97511 011345689999999999999999999997778999999999999999999999999999999999999
Q ss_pred ccCCHhHHHHHhccccceecc
Q 007558 566 CVSFTPILELLNGRVVSKHFS 586 (598)
Q Consensus 566 ~~~~~~~~~~L~~~~~~~~~~ 586 (598)
|+++++++++|+++||++|||
T Consensus 560 ~~~~~~~~~~L~~~v~~~~~s 580 (581)
T 4eql_A 560 CIKSGKALQVLETCVVAKFFS 580 (581)
T ss_dssp -----------------CEEC
T ss_pred ccCCHHHHHHHHhcchheeec
Confidence 999999999999999999998
No 3
>4epl_A Jasmonic acid-amido synthetase JAR1; ANL adenylating enzyme, acyl acid-amido synthetase, adenylat ligase; HET: JAI; 2.01A {Arabidopsis thaliana}
Probab=100.00 E-value=6.1e-130 Score=1083.07 Aligned_cols=564 Identities=39% Similarity=0.701 Sum_probs=520.2
Q ss_pred CcccccHHHHHHHHHHhhCHHHHHHHHHHHHHHhcCCChhhHhcCCCCC-CCHH-HHhhcCCCcccccchHHHHHHHcCC
Q 007558 14 PLCEKDAKALRFIEEMTRNADPVQERVLAAILSRNGETEYLRRFNLDGA-TDRD-TFKSKVPVVTYEDLQPEIQRIANGD 91 (598)
Q Consensus 14 ~~~~~~~~~~~~~e~~~~~~~~~Q~~~L~~iL~~~~~T~ygr~~gf~~i-~s~e-df~~~vPl~~Yed~~p~ier~~~Ge 91 (598)
...+++++.++.||++++|+.++|+++|++||+.|++|+|||+|||++| ++++ ||+++|||++|||++||||||++||
T Consensus 11 ~~~~~~~~~~~~~e~~~~~~~~vQ~~vL~~iL~~n~~Teygk~~gf~~i~~~~e~dF~~~VPi~~Yedl~pyIeRi~~Ge 90 (581)
T 4epl_A 11 VETFDMNRVIDEFDEMTRNAHQVQKQTLKEILLKNQSAIYLQNCGLNGNATDPEEAFKSMVPLVTDVELEPYIKRMVDGD 90 (581)
T ss_dssp --CCCHHHHHHHHHHHHHTHHHHHHHHHHHHHHHTTTCHHHHTTTCC----CHHHHHHHHSCCBCHHHHHHHHHHHHTTC
T ss_pred ccccccHHHHHHHHHHHcCHHHHHHHHHHHHHHHhccCHHHHhcCCCcccCCHHHHHHHhCCCccHHHHHHHHHHHHCCC
Confidence 3456778889999999999999999999999999999999999999999 9999 9999999999999999999999999
Q ss_pred CcccccCCccceeecccccCCCCcccccCChHHHHHHHHHHHHHHHHHhhcCCCCC-CCceEEEEecccccccCCCceee
Q 007558 92 RSAILSSHPVSEFLTSSGTSAGERKLMPTIHEELDRRQLLFSLLMPVMNLYVPGLD-KGKGLYFLFVKAETKTASGLLAR 170 (598)
Q Consensus 92 ~~~ll~~~pi~~f~~TSGTT~G~~K~IP~T~~~~~~~~~~~~~~~~~~~~~~p~~~-~gk~l~~~~~~~~~~t~~Gip~g 170 (598)
.++|||++|+.+|++|||||+|++|+||+|+++++.+..+..++..++++ +|.++ .||.|++.+++.+..|++|+|+|
T Consensus 91 ~~~iL~~~pi~~f~~SSGTT~gk~K~IP~T~~~l~~~~~~~~~~~~~~~~-~p~l~~~Gk~L~l~~~s~~~~t~~Gi~~G 169 (581)
T 4epl_A 91 TSPILTGHPVPAISLSSGTSQGRPKFIPFTDELMENTLQLFRTAFAFRNR-DFPIDDNGKALQFIFSSKQYISTGGVPVG 169 (581)
T ss_dssp CSSSSSSSCCSEEEEEEEEETTEEEEEEECHHHHHHHHHHHHHHHHHHHH-HSCCCTTCEEEEECCCCCCEECTTSCEEE
T ss_pred CCCccCCCCcceEEecCCCCCCCccccccCHHHHHHHHHHHHHHHHHHhh-CCccccCCcEEEEeecCCcccCCCCceee
Confidence 77999999999999999999999999999999999987778888888776 68888 89999988888899999999999
Q ss_pred cccccccccccccCCCCCCCccccCchhhhccCChhhHHHHHHHhhhccccceeEEEeccHHHHHHHHHHHHHHHHHHHH
Q 007558 171 PVLTSYYKSEQFKTRPYDPFNVYTSPDEAILCVDSFQSMYIQMLCGLIMREEVLRVGAVFASGLLRAIRFLQLNWKQLAD 250 (598)
Q Consensus 171 ~~s~~~~~~~~~~~~~~~~~~~~~~P~~v~~~~d~~~~~Y~~Ll~~L~~~~~v~~i~~~~~~~ll~~~~~l~~~w~~l~~ 250 (598)
++|+..++|.+|+++|..+...|++|.+++.++|..+++||||||||.++++|.+|+++|+++|+++++.|+++|++||+
T Consensus 170 ~~S~~~~~s~~f~~~p~~~~~~~t~P~e~i~~~D~~~~~Y~~Ll~~L~~~~~v~~i~a~fas~ll~~~~~l~~~We~l~~ 249 (581)
T 4epl_A 170 TATTNVYRNPNFKAGMKSITSPSCSPDEVIFSPDVHQALYCHLLSGILFRDQVQYVFAVFAHGLVHAFRTFEQVWEEIVT 249 (581)
T ss_dssp CHHHHHHTSTTHHHHHGGGSCCBSSCHHHHTCSCHHHHHHHHHHHHHHTGGGEEEEEEEEHHHHHHHHHHHHHHHHHHHH
T ss_pred echhhhhhcchhhcCchhhhhcccCCHHHhcCCCHHHHHHHHHHHhhhccccccEEeeccHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999998887666788999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHcccCCCCCCChhhhhhhhhccCCCHHHHHHHHHHhccC-CCcccccccCCCCceeEEEEeCchhhhHHHHHhhcCCC
Q 007558 251 DISAGTLNPNVTDPSIRKCMENILKPNPELAEFITKECSGE-KWDGIITRIWPNTKYLDVIVTGAMAQYIPTLDHYSGGL 329 (598)
Q Consensus 251 dI~~gt~~~~i~~~~~r~~l~~~l~~~p~~A~~L~~~~~~~-~~~g~~~~lWP~l~~l~~~~~g~~~~y~~~l~~~~~g~ 329 (598)
||++|+++++++++++|.++++.++|+|++|++|++.|.+. +|.|++++|||||++|.||++|+|++|+++|++++|++
T Consensus 250 dI~~gtl~~~it~~~~R~~l~~v~~p~~~~a~~l~~~~~~~~~~~g~i~~lWPnl~~i~~~~~G~~~~Y~~~l~~~~g~~ 329 (581)
T 4epl_A 250 DIKDGVLSNRITVPSVRTAMSKLLTPNPELAETIRTKCMSLSNWYGLIPALFPNAKYVYGIMTGSMEPYVPKLRHYAGDL 329 (581)
T ss_dssp HHHHTCCCTTCCCHHHHHHHHTTCCCCHHHHHHHHHHHHHSSTTTTHHHHHCTTCCCEEEECSGGGGGGHHHHHHHHTTS
T ss_pred HHHhcCCCcCCCCHHHHHHHhCCCCCCHHHHHHHHHHhCCCCccccCHHHhCCCCceEEEEeCCChHHHHHHHHHHcCCC
Confidence 99999999999999999999999999999999999999886 69999999999999999999999999999999999999
Q ss_pred CeeccccccccccccccCCCCCCCCCCceeeecCCeEEEeecCCCCCCCCCCCCCCccccccccCCCCeEEEEEcccccc
Q 007558 330 PLACTMYASSECFFGLNMKPMCKPSEVSYTIMPNMGYFEFLPHDPNSPPLSPESPPRLVDLAHVQVGKQYELVVTTYAGL 409 (598)
Q Consensus 330 ~v~~~~ygaSEg~~~i~~~~~~~~~~~~~~l~~~~~ffEFip~~~~~~~~~~~~~~~~v~~~eve~G~~yelvvTt~~GL 409 (598)
|+++.+|+||||+||+|++|.|+++..+|+|+|+.+||||||+++.+. ..+++|+++||++|++|||||||++||
T Consensus 330 p~~~~~Y~ASEg~~gi~~~p~~~~~~~~~~L~p~~~ffEFiP~~~~~~-----~~~~~v~l~eve~G~~YelviTt~~GL 404 (581)
T 4epl_A 330 PLVSHDYGSSEGWIAANVTPRLSPEEATFAVIPNLGYFEFLPVSETGE-----GEEKPVGLTQVKIGEEYEVVITNYAGL 404 (581)
T ss_dssp CEEECCEEETTEEEEECCCTTSCTTTCCEEECTTSCEEEEEEC------------CCCEEGGGCCTTCEEEEEEESTTSC
T ss_pred ccccCceeccceeeeeecCCCCCccccceeecCCcEEEEEEecccccC-----CCCceeeHHHcCCCCeEEEEEeeccce
Confidence 999999999999999999999998888999999999999999886532 234699999999999999999999999
Q ss_pred cccccCCEEEEeeeeCCCCeEEEEeecCceecccccccCHHHHHHHHHHHHHHhhhcCCeEEeEEEeecCCCCCceEEEE
Q 007558 410 NRYRVGDILLVTGYYNSAPQFRFVKRKNVLLSIDSDKTDEAELQKGIDNASLLLKEFNASVIEYTSYADTTTIPGHYVIF 489 (598)
Q Consensus 410 ~RYr~GDvV~v~gf~~~~P~i~f~gR~~~~l~~~GEki~e~~v~~av~~a~~~l~~~g~~l~~f~~~~d~~~~p~~Y~l~ 489 (598)
||||+||+|+|+||++++|+|+|+||++++||++|||++|++|++||.+|++.|+++|+.|.|||+++|.++.||||+||
T Consensus 405 ~RYr~GD~v~v~g~~~~~p~~~~~gR~~~~l~~~Ge~~~~~~v~~al~~a~~~l~~~~~~l~eft~~~d~~~~p~hyv~~ 484 (581)
T 4epl_A 405 YRYRLGDVVKVIGFYNNTPQLKFICRRNLILSINIDKNTERDLQLSVESAAKRLSEEKIEVIDFSSYIDVSTDPGHYAIF 484 (581)
T ss_dssp SSEEEEEEEEEEEEETTEEEEEEEEETTCCBCSSSCCBCHHHHHHHHHHHHHHHHTTTCCEEEEEEEEECSSSSCEEEEE
T ss_pred eeEEcCCEEEEecccCCCcEEEEEeecCCeEEeeeeECCHHHHHHHHHHHHHhhcccCCeEEEEEEecCCCCCCCcEEEE
Confidence 99999999999999999999999999999999999999999999999999988878999999999999888889999999
Q ss_pred EEEeecccCCCCChHHHHHHHHHHHHHh-ChhhHhccccCCccCCeEEEEeCCChHHHHHHHHHhcCCCCCCCCCCccc-
Q 007558 490 WELLVKDAANSPSDEVLNQCCLVVEESL-NSVYRQGRVADNSIGPLEIRVVKNGTFEELMDYAISRGASINQYKAPRCV- 567 (598)
Q Consensus 490 ~E~e~~~~~~~~~~~~l~~~~~~ld~~L-n~~Y~~~R~~~g~l~p~~v~~v~~gtF~~~~~~~~~~G~~~~Q~K~Pr~~- 567 (598)
||++ + .++.+.+++||..||++| |++|+.+| ..|+|+||+|++|++|+|++|+++++++|++++|||+|||+
T Consensus 485 wE~~--~---~~~~~~l~~~~~~Ld~~L~n~~Y~~~R-~~~~L~pl~v~~v~~G~F~~l~~~~~~~G~~~~Q~K~PR~~~ 558 (581)
T 4epl_A 485 WEIS--G---ETNEDVLQDCCNCLDRAFIDAGYVSSR-KCKTIGALELRVVAKGTFRKIQEHFLGLGSSAGQFKMPRCVK 558 (581)
T ss_dssp EEES--S---CCCHHHHHHHHHHHHHHCCCHHHHHHH-HHTSSCCCEEEEECTTHHHHHHHHHHTTC------CCCSSCC
T ss_pred Eeec--C---CCCHHHHHHHHHHHHHHhCChhHHHHH-hcCCCCCcEEEEeCcchHHHHHHHHHhCCCCCCCcCCCeeec
Confidence 9985 3 346678999999999999 99999999 56799999999999999999999999999999999999999
Q ss_pred -CCHhHHHHHhccccceeccCCC
Q 007558 568 -SFTPILELLNGRVVSKHFSPAA 589 (598)
Q Consensus 568 -~~~~~~~~L~~~~~~~~~~~~~ 589 (598)
++++++++|+++||++|||+++
T Consensus 559 ~~~~~~~~~L~~~v~~~~~s~~~ 581 (581)
T 4epl_A 559 PSNAKVLQILCENVVSSYFSTAF 581 (581)
T ss_dssp TTCHHHHHHHHTTEEEEEECCCC
T ss_pred CCCHHHHHHHHhcccccccCCCC
Confidence 9999999999999999999875
No 4
>3qov_A Phenylacetate-coenzyme A ligase; acetyl-COA synthetase-like, structural genomics, joint cente structural genomics, JCSG; HET: MSE ADP COA; 2.20A {Bacteroides thetaiotaomicron} PDB: 3s89_A*
Probab=99.91 E-value=2.9e-23 Score=224.72 Aligned_cols=389 Identities=18% Similarity=0.186 Sum_probs=228.1
Q ss_pred HHHHHh-hCHHHHHHHHHHHHHHhcCCChhhHhc----CCC--CCCCHHHHhhcCCCcccccchHHHHHHHcCCCccccc
Q 007558 25 FIEEMT-RNADPVQERVLAAILSRNGETEYLRRF----NLD--GATDRDTFKSKVPVVTYEDLQPEIQRIANGDRSAILS 97 (598)
Q Consensus 25 ~~e~~~-~~~~~~Q~~~L~~iL~~~~~T~ygr~~----gf~--~i~s~edf~~~vPl~~Yed~~p~ier~~~Ge~~~ll~ 97 (598)
.+|.+. ++.++.|.+.|+++++...+++|||++ |+. +|.+.+|++ ++|++++++++.... .+.. . ..
T Consensus 10 ~~e~~~~~~~~~~q~~~L~~~l~~~~~~p~y~~~~~~~g~~~~~i~~~~dl~-~lP~~~~~~l~~~~p---~~~~-~-~~ 83 (436)
T 3qov_A 10 EIEIMSREKLQELQLQRLKKTINIAANSPYYKEVFSKNGITGDSIQSLDDIR-KIPFTTKSDMRANYP---FGLV-A-GD 83 (436)
T ss_dssp HHHTCCHHHHHHHHHHHHHHHHHHHTTSHHHHHHHHHTTCCTTSCSSSGGGG-GSCCBCHHHHHHTTT---TTTC-C-SC
T ss_pred cccCCCHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHcCCChhhCCCHHHHH-HCCCCCHHHHHhcCC---Cccc-c-CC
Confidence 455555 667899999999999977999999964 654 788999996 899999999975421 1110 1 12
Q ss_pred C-CccceeecccccCCCCcccccCChHHHHHHHHHHHHHHHHHhhcCCCCCCCceEEEEecccccccCCCceeecccccc
Q 007558 98 S-HPVSEFLTSSGTSAGERKLMPTIHEELDRRQLLFSLLMPVMNLYVPGLDKGKGLYFLFVKAETKTASGLLARPVLTSY 176 (598)
Q Consensus 98 ~-~pi~~f~~TSGTT~G~~K~IP~T~~~~~~~~~~~~~~~~~~~~~~p~~~~gk~l~~~~~~~~~~t~~Gip~g~~s~~~ 176 (598)
. +.+.++..||||| |+||-++.|...+........ ..+. . .++..+..+... .+. +.-.|..
T Consensus 84 ~~~~~a~i~~TSGTT-G~PK~v~~th~~~~~~~~~~~---~~~~-~-~~~~~~d~~~~~--~~~-----~~~~~~~---- 146 (436)
T 3qov_A 84 MKRDGVRIHSSSGTT-GNPTVIVHSQHDLDSWANLVA---RCLY-M-VGIRKTDVFQNS--SGY-----GMFTGGL---- 146 (436)
T ss_dssp HHHHEEEEEECSCSS-SCCCEEEEEHHHHHHHHHHHH---HHHH-H-TTCCTTSEEEEC--SCC-----TTCHHHH----
T ss_pred CcCCeEEEEECCCcC-CCCeEEEECHHHHHHHHHHHH---HHHH-H-cCCCCCCEEEEC--ccc-----ccchhHH----
Confidence 2 3455788999999 899999999987644222111 0111 1 122233332211 100 0000000
Q ss_pred cccccccCCCCCCCccccCchhhhccCChhhHHHHHHHhhhccccceeEEEeccHHHHHHHHHHHHHHHHHHHHHHHccc
Q 007558 177 YKSEQFKTRPYDPFNVYTSPDEAILCVDSFQSMYIQMLCGLIMREEVLRVGAVFASGLLRAIRFLQLNWKQLADDISAGT 256 (598)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~P~~v~~~~d~~~~~Y~~Ll~~L~~~~~v~~i~~~~~~~ll~~~~~l~~~w~~l~~dI~~gt 256 (598)
...+..+..+.. +-......+ +.+++.|++.
T Consensus 147 ------------------------------~~~~~~l~~G~~----~~~~~~~~~--------------~~~~~~i~~~- 177 (436)
T 3qov_A 147 ------------------------------GFQYGAERLGCL----TVPAAAGNS--------------KRQIKFISDF- 177 (436)
T ss_dssp ------------------------------HHHHHHHHHTCE----EECCCSCCH--------------HHHHHHHHHH-
T ss_pred ------------------------------HHHHHHHHcCCE----EEeCCCCCH--------------HHHHHHHHHH-
Confidence 001111211110 100001111 2233333332
Q ss_pred CCCCCCChhhhhhhhhccCCCHHHHHHHHHHhccCCCcccccccCCCCceeEEEEeCch---hhhHHHHHhhcCCCCeec
Q 007558 257 LNPNVTDPSIRKCMENILKPNPELAEFITKECSGEKWDGIITRIWPNTKYLDVIVTGAM---AQYIPTLDHYSGGLPLAC 333 (598)
Q Consensus 257 ~~~~i~~~~~r~~l~~~l~~~p~~A~~L~~~~~~~~~~g~~~~lWP~l~~l~~~~~g~~---~~y~~~l~~~~~g~~v~~ 333 (598)
+++. +...|..+..|.+...+.+. ..-+++ ++.+++||. ...++.+++.+ |++++
T Consensus 178 ---~~t~----------~~~~P~~~~~l~~~~~~~~~----~~~~~~---lr~i~~gGe~l~~~~~~~~~~~~-g~~v~- 235 (436)
T 3qov_A 178 ---KTTA----------LHAIPSYAIRLAEVFQEEGI----DPRETT---LKTLVIGAEPHTDEQRRKIERML-NVKAY- 235 (436)
T ss_dssp ---TCCE----------EECCHHHHHHHHHHHHHTTC----CTTSSS---CCEEEEESSCCCHHHHHHHHHHH-TSEEE-
T ss_pred ---CCCE----------EEECHHHHHHHHHHHHHcCC----CcccCC---ccEEEEeCCcCCHHHHHHHHHHh-CccEE-
Confidence 1221 33478878887766554321 111334 677777763 46778888888 89999
Q ss_pred cccccccc-cccccCCCCCCCCCCceeeecCCeEEEeecCCCCCCCCCCCCCCccccccccCCCCeEEEEEccc----cc
Q 007558 334 TMYASSEC-FFGLNMKPMCKPSEVSYTIMPNMGYFEFLPHDPNSPPLSPESPPRLVDLAHVQVGKQYELVVTTY----AG 408 (598)
Q Consensus 334 ~~ygaSEg-~~~i~~~~~~~~~~~~~~l~~~~~ffEFip~~~~~~~~~~~~~~~~v~~~eve~G~~yelvvTt~----~G 408 (598)
+.||+||+ ..++.. .|+ ...++++......+|.+++++. ..|.+|+.|||+|++. ..
T Consensus 236 ~~YG~TE~~~~~~~~--~~~-~~~g~~~~~~~~~v~i~d~~~g---------------~~~~~g~~Gel~v~~~~~~~~~ 297 (436)
T 3qov_A 236 NSFGMTEMNGPGVAF--ECQ-EQNGMHFWEDCYLVEIIDPETG---------------EPVPEGEIGELVLTTLDREMMP 297 (436)
T ss_dssp EEEEEGGGTEEEEEE--ECT-TCSSEEECTTTEEEEEECTTTC---------------SBCSTTCCEEEEEEESSCCSSC
T ss_pred ecCcchhhcCCeeEE--ecC-CCCeeEEccCceEEEEEECCCC---------------CCCCCCCceEEEEeccCcCCce
Confidence 99999997 332322 222 2346666556667888875432 1456799999999864 23
Q ss_pred ccccccCCEEEEeeeeCC------CCeE-EEEeecCceecccccccCHHHHHHHHHHHHHHhhhcCCeEEeEEEeecCCC
Q 007558 409 LNRYRVGDILLVTGYYNS------APQF-RFVKRKNVLLSIDSDKTDEAELQKGIDNASLLLKEFNASVIEYTSYADTTT 481 (598)
Q Consensus 409 L~RYr~GDvV~v~gf~~~------~P~i-~f~gR~~~~l~~~GEki~e~~v~~av~~a~~~l~~~g~~l~~f~~~~d~~~ 481 (598)
..||+|||+++++. ++ .|+| .|+||.+|+++++|++|++.+||++|.+. .++. ..+.+..+...
T Consensus 298 ~~~y~TGDl~~~~~--~gc~cG~~~~~il~i~GR~dd~ik~~G~~v~p~eiE~~l~~~------p~v~-~~~vv~~~~~~ 368 (436)
T 3qov_A 298 LIRYRTRDLTRILP--GKCPCGRTHLRIDRIKGRSDDMFIIKGVNIFPMQVEKILVQF------PELG-SNYLITLETVN 368 (436)
T ss_dssp CCSEEEEEEECEEC--SCCTTCCCSCEECCCCCBSSSCEEETTEEECHHHHHHHHTTC------TTEE-EEEEEEEEEET
T ss_pred EEEEEcCCEEEEcC--CCCCCCCCccccCcccCccCCEEEECCEEECHHHHHHHHHhC------cCcC-CcEEEEEEcCC
Confidence 67899999999986 34 3455 99999999999999999999999999652 2222 02332222111
Q ss_pred CCceEEEEEEEeecccCCCCChHHHHHHHHHHHHHhChhhHhccccCCccCCeEEEEeCCChHHH
Q 007558 482 IPGHYVIFWELLVKDAANSPSDEVLNQCCLVVEESLNSVYRQGRVADNSIGPLEIRVVKNGTFEE 546 (598)
Q Consensus 482 ~p~~Y~l~~E~e~~~~~~~~~~~~l~~~~~~ld~~Ln~~Y~~~R~~~g~l~p~~v~~v~~gtF~~ 546 (598)
....-++++++. +. ...+....+++.+.+.+.| .... --|..+.+|..+.|.+
T Consensus 369 ~~~~l~a~v~~~--~~-~~~~~~~~~~l~~~l~~~l-------~~~~--~~p~~i~~v~~~~lP~ 421 (436)
T 3qov_A 369 NQDEMIVEVELS--DL-STDNYIELEKIRRDIIRQL-------KDEI--LVTPKVKLVKKGSLPQ 421 (436)
T ss_dssp TEEEEEEEEEEC--TT-CCCCHHHHHHHHHHHHHHH-------HHHH--SSCCEEEEECTTCCC-
T ss_pred CCcEEEEEEEEc--Cc-cccchhhHHHHHHHHHHHH-------HHhc--CCceEEEEeCCCcccC
Confidence 223455777775 21 1112223444555566666 2111 2355899999888774
No 5
>2y4o_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: DLL; 1.90A {Burkholderia cenocepacia}
Probab=99.89 E-value=4.8e-22 Score=215.52 Aligned_cols=386 Identities=15% Similarity=0.097 Sum_probs=220.3
Q ss_pred hCHHHHHHHHHHHHHHhc-CCChhhHhc----CC--CCCCCHHHHhhcCCCcccccchHHHHHHHcCCCcccccCCccce
Q 007558 31 RNADPVQERVLAAILSRN-GETEYLRRF----NL--DGATDRDTFKSKVPVVTYEDLQPEIQRIANGDRSAILSSHPVSE 103 (598)
Q Consensus 31 ~~~~~~Q~~~L~~iL~~~-~~T~ygr~~----gf--~~i~s~edf~~~vPl~~Yed~~p~ier~~~Ge~~~ll~~~pi~~ 103 (598)
++.++.|.+.|+++|+.. ++++||+++ |+ .+|.+++||+ ++|+++|++++.... .+. .-...+.+.+
T Consensus 23 ~~~~~~q~~~l~~~l~~a~~~~~~y~~~~~~~~~~~~~i~~~~dl~-~lP~~~~~~l~~~~p---~~~--~~~~~~~~~~ 96 (443)
T 2y4o_A 23 DELQALQLERLKWSLRHAYDNVPHYRRTFDAAGVHPDDLKSLADLA-KFPFSTKNDLRDNYP---FGL--FAVPREQVVR 96 (443)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHTCCGGGCCSGGGGG-GSCCBCHHHHHTTTT---TTT--CSSCGGGCCE
T ss_pred HHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHcCCChhhCCCHHHHH-HCCCCcHHHHHhhCC---Ccc--cCCChhheEE
Confidence 557899999999999975 899999975 44 4689999996 899999999864321 111 1123455567
Q ss_pred eecccccCCCCcccccCChHHHHHHHHHHHHHHHHHhhcCCCCCCCceEEEEecccccccCCCceeeccccccccccccc
Q 007558 104 FLTSSGTSAGERKLMPTIHEELDRRQLLFSLLMPVMNLYVPGLDKGKGLYFLFVKAETKTASGLLARPVLTSYYKSEQFK 183 (598)
Q Consensus 104 f~~TSGTT~G~~K~IP~T~~~~~~~~~~~~~~~~~~~~~~p~~~~gk~l~~~~~~~~~~t~~Gip~g~~s~~~~~~~~~~ 183 (598)
+..||||| |+||.+++|...+......... .+. . -++..+..+... . |.+.....
T Consensus 97 i~~TSGTT-G~PK~v~~t~~~~~~~~~~~~~---~~~-~-~~~~~~d~~l~~-~----------~~~~~~~~-------- 151 (443)
T 2y4o_A 97 VHASSGTT-GKPTVVGYTARDIDTWANVTAR---SIR-A-AGGRPGDTLHNA-F----------GYGLFTGG-------- 151 (443)
T ss_dssp EEEECCSS-SSCEEEEECHHHHHHHHHHHHH---HHH-H-TTCCTTCEEEEC-S----------CCSSSHHH--------
T ss_pred EEECCCCC-CCceEEecCHHHHHHHHHHHHH---HHH-H-cCCCCCCEEEEe-c----------cCcccccH--------
Confidence 88999999 8999999999876543221111 110 1 122233332211 0 10000000
Q ss_pred CCCCCCCccccCchhhhccCChhhHHHHHHHhhhccccceeEEEeccHHHHHHHHHHHHHHHHHHHHHHHcccCCCCCCC
Q 007558 184 TRPYDPFNVYTSPDEAILCVDSFQSMYIQMLCGLIMREEVLRVGAVFASGLLRAIRFLQLNWKQLADDISAGTLNPNVTD 263 (598)
Q Consensus 184 ~~~~~~~~~~~~P~~v~~~~d~~~~~Y~~Ll~~L~~~~~v~~i~~~~~~~ll~~~~~l~~~w~~l~~dI~~gt~~~~i~~ 263 (598)
....+..++++.. +-.+. .+ +-+++++.|++. +++.
T Consensus 152 ----------------------~~~~~~~~~~G~~----~~~~~-~~-------------~~~~~~~~i~~~----~~t~ 187 (443)
T 2y4o_A 152 ----------------------LGIHYGAERLGCM----VVPMS-GG-------------QTEKQVQLIRDF----EPKI 187 (443)
T ss_dssp ----------------------HHHHHHHHHHTCE----EECCC-SC-------------CHHHHHHHHHHH----CCSE
T ss_pred ----------------------HHHHHHHHHcCCE----EEECC-CC-------------CHHHHHHHHHHh----CCcE
Confidence 0001111111110 10000 11 112333344433 2222
Q ss_pred hhhhhhhhhccCCCHHHHHHHHHHhccCCCcccccccCCCCceeEEEEeCch---hhhHHHHHhhcCCCCeecccccccc
Q 007558 264 PSIRKCMENILKPNPELAEFITKECSGEKWDGIITRIWPNTKYLDVIVTGAM---AQYIPTLDHYSGGLPLACTMYASSE 340 (598)
Q Consensus 264 ~~~r~~l~~~l~~~p~~A~~L~~~~~~~~~~g~~~~lWP~l~~l~~~~~g~~---~~y~~~l~~~~~g~~v~~~~ygaSE 340 (598)
+...|..+..|.+...+.+. .+ -+++ ++.+++||. ...++++++.+ |++++ +.||+||
T Consensus 188 ----------l~~~Ps~~~~l~~~~~~~~~--~~--~~~~---lr~i~~gGe~l~~~~~~~~~~~~-g~~v~-~~YG~TE 248 (443)
T 2y4o_A 188 ----------ILVTPSYMLNLIDEMVRQGM--DP--AESS---LKIGIFGAEPWTQALRNEVETRV-GIDAL-DIYGLSE 248 (443)
T ss_dssp ----------EEECHHHHHHHHHHHHHTTC--CG--GGSS---CCEEEEESSCCCHHHHHHHHHHH-TCEEE-EEEEETT
T ss_pred ----------EEECHHHHHHHHHHHHHcCC--Cc--ccCC---ceEEEECCCcCCHHHHHHHHHHh-CcCEE-eccCchh
Confidence 22377777777665543321 11 1345 566666663 46778888888 89998 9999999
Q ss_pred c-c--ccccCCCCCCCCCCceeeecCCeEEEeecCCCCCCCCCCCCCCccccccccCCCCeEEEEEcccc----cccccc
Q 007558 341 C-F--FGLNMKPMCKPSEVSYTIMPNMGYFEFLPHDPNSPPLSPESPPRLVDLAHVQVGKQYELVVTTYA----GLNRYR 413 (598)
Q Consensus 341 g-~--~~i~~~~~~~~~~~~~~l~~~~~ffEFip~~~~~~~~~~~~~~~~v~~~eve~G~~yelvvTt~~----GL~RYr 413 (598)
. . ++.. |+....++++.....++|++++++. + .|.+|+.|||+||+.. .+.||+
T Consensus 249 ~~g~~~~~~----~~~~~~g~~~~~~~~~~~i~d~~~g----------~-----~~~~G~~Gel~v~~~t~~~~p~~~y~ 309 (443)
T 2y4o_A 249 VMGPGVACE----CVETKDGPVIWEDHFYPEIIDPVTG----------E-----VLPDGSQGELVFTSLTKEAMPVIRYR 309 (443)
T ss_dssp TTEEEEEEE----CTTTCCSEEECTTTEEEEEECTTTC----------C-----BCCTTCCEEEEEEESSCSSSCCSSEE
T ss_pred hcCCeEEec----cCCCCCceEEccCCeEEEEEcCCCC----------C-----CCCCCCceEEEEeCCCcccChhheee
Confidence 5 3 3332 2222225666556678899875532 1 3467999999998653 257899
Q ss_pred cCCEEEEeee-eCCCCeE-EEEeecCceecccccccCHHHHHHHHHHHHHHhhhcCCeEEeEEEeecCCCCCceEEEEEE
Q 007558 414 VGDILLVTGY-YNSAPQF-RFVKRKNVLLSIDSDKTDEAELQKGIDNASLLLKEFNASVIEYTSYADTTTIPGHYVIFWE 491 (598)
Q Consensus 414 ~GDvV~v~gf-~~~~P~i-~f~gR~~~~l~~~GEki~e~~v~~av~~a~~~l~~~g~~l~~f~~~~d~~~~p~~Y~l~~E 491 (598)
|||+++++.- -...|+| .|+||.+|+++++|++|++.+||++|.+. .++. ..+.+..........-+++++
T Consensus 310 TGDl~~~~~~cG~~~~~l~~i~GR~~d~i~~~G~~v~p~eiE~~l~~~------p~V~-~~~vv~~~~~~~~~~~~a~v~ 382 (443)
T 2y4o_A 310 TRDLTALLPPTARAMRRLAKITGRSDDMLIVRGVNVFPSQIEEIVVAL------PLLS-GQFQITLSRDGHMDRLDLAVE 382 (443)
T ss_dssp EEEEECEECCSSSSSCEECCCCEESSCCEEETTEEECHHHHHHHHHTS------TTEE-EEEEEEEEEETTEEEEEEEEE
T ss_pred cCCEEEEcCCCCCCccccCccccccCCeEEECCEEECHHHHHHHHHhC------cCcC-ccEEEEEecCCCCceEEEEEE
Confidence 9999999861 0123566 89999999999999999999999999652 2321 123222211112234456666
Q ss_pred EeecccCCCCChHHHHHHHHHHHHHhChhhHhccccCCccCCeEEEEeCCChHHH
Q 007558 492 LLVKDAANSPSDEVLNQCCLVVEESLNSVYRQGRVADNSIGPLEIRVVKNGTFEE 546 (598)
Q Consensus 492 ~e~~~~~~~~~~~~l~~~~~~ld~~Ln~~Y~~~R~~~g~l~p~~v~~v~~gtF~~ 546 (598)
+..... ........+++.+.+.+.| .... --|.+|++|..+.+.+
T Consensus 383 ~~~~~~-~~~~~~~~~~l~~~l~~~l-------~~~~--~~p~~v~~v~~~~lP~ 427 (443)
T 2y4o_A 383 LRSEAA-ASVTDGERAALARELQHRI-------KTMV--GVSSGVTVLAAGGIPA 427 (443)
T ss_dssp ECHHHH-TTCCHHHHHHHHHHHHHHH-------HHHT--CCCCEEEEECTTCSCC
T ss_pred ECCccc-ccchhhHHHHHHHHHHHHH-------HHHh--CCceEEEEeCCCcccC
Confidence 531000 0011223344445555555 2111 1345788888777763
No 6
>2y27_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: MSE PG4 ATP; 1.60A {Burkholderia cenocepacia} PDB: 2y4n_A*
Probab=99.89 E-value=1.7e-22 Score=218.62 Aligned_cols=315 Identities=16% Similarity=0.158 Sum_probs=193.5
Q ss_pred hCHHHHHHHHHHHHHHhc-CCChhhHhc----CC--CCCCCHHHHhhcCCCcccccchHHHHHHHcCCCcccccCCccce
Q 007558 31 RNADPVQERVLAAILSRN-GETEYLRRF----NL--DGATDRDTFKSKVPVVTYEDLQPEIQRIANGDRSAILSSHPVSE 103 (598)
Q Consensus 31 ~~~~~~Q~~~L~~iL~~~-~~T~ygr~~----gf--~~i~s~edf~~~vPl~~Yed~~p~ier~~~Ge~~~ll~~~pi~~ 103 (598)
++.++.|.+.|+.+|++. ++++||+++ |+ .++.+++||+ ++|+++|++++.... .+- .-...+.+.+
T Consensus 21 ~~~~~~~~~~l~~~l~~a~~~~~~y~~~~~~~~~~~~~i~~~~dl~-~lP~~~~~~l~~~~~---~~~--~~~~~~~~~~ 94 (437)
T 2y27_A 21 DELTALQLERLKWSLRHAYDHSPVYRRKFDEAGVHPDDLKTLADLS-RFPFTTKGDLRDSYP---FGM--FAVPQDRISR 94 (437)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHTCCGGGCSSGGGGG-GSCCBCHHHHHHTTT---TTT--CSSCGGGCCE
T ss_pred HHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHcCCChhhCCCHHHHH-HCCCCCHHHHHhcCC---Ccc--ccCChhHeEE
Confidence 557889999999999975 899999975 44 4688999996 899999999875421 111 1123455567
Q ss_pred eecccccCCCCcccccCChHHHHHHHHHHHHHHHHHhhcCCCCCCCceEEEEecccccccCCCceeeccccccccccccc
Q 007558 104 FLTSSGTSAGERKLMPTIHEELDRRQLLFSLLMPVMNLYVPGLDKGKGLYFLFVKAETKTASGLLARPVLTSYYKSEQFK 183 (598)
Q Consensus 104 f~~TSGTT~G~~K~IP~T~~~~~~~~~~~~~~~~~~~~~~p~~~~gk~l~~~~~~~~~~t~~Gip~g~~s~~~~~~~~~~ 183 (598)
+..||||| |+||-+++|...+......... .+. . -++..+..++.. . |.+.....
T Consensus 95 i~~TSGTT-G~PK~v~~t~~~~~~~~~~~~~---~~~-~-~~~~~~d~~~~~-~----------~~~~~~~~-------- 149 (437)
T 2y27_A 95 IHASSGTT-GKPTVVGYTAADIDTWANLVAR---SIR-A-AGARRGDKVHVS-Y----------GYGLFTGG-------- 149 (437)
T ss_dssp EEECCCTT-SSCCEEEECHHHHHHHHHHHHH---HHH-H-TTCCTTCEEEEC-S----------CCSSSHHH--------
T ss_pred EEECCCCC-CCceEEecCHHHHHHHHHHHHH---HHH-H-cCCCCCCEEEEc-c----------cccccccc--------
Confidence 88999999 8999999999876543221111 111 1 122233332211 0 10000000
Q ss_pred CCCCCCCccccCchhhhccCChhhHHHHHHHhhhccccceeEEE-eccHHHHHHHHHHHHHHHHHHHHHHHcccCCCCCC
Q 007558 184 TRPYDPFNVYTSPDEAILCVDSFQSMYIQMLCGLIMREEVLRVG-AVFASGLLRAIRFLQLNWKQLADDISAGTLNPNVT 262 (598)
Q Consensus 184 ~~~~~~~~~~~~P~~v~~~~d~~~~~Y~~Ll~~L~~~~~v~~i~-~~~~~~ll~~~~~l~~~w~~l~~dI~~gt~~~~i~ 262 (598)
....+..++.+. ..+. ..+ +.+.+++.|++. +++
T Consensus 150 ----------------------~~~~~~~~~~G~------~~~~~~~~-------------~~~~~~~~i~~~----~~t 184 (437)
T 2y27_A 150 ----------------------LGAHYGAERAGL------TVIPFGGG-------------QTEKQVQLIQDF----RPD 184 (437)
T ss_dssp ----------------------HHHHHHHHHTTC------EEECCCSC-------------CHHHHHHHHHHH----CCS
T ss_pred ----------------------hHHHHHHHHcCC------EEEeCCCC-------------CHHHHHHHHHHh----CCC
Confidence 000011111111 0110 011 123333444433 222
Q ss_pred ChhhhhhhhhccCCCHHHHHHHHHHhccCCCcccccccCCCCceeEEEEeCch---hhhHHHHHhhcCCCCeeccccccc
Q 007558 263 DPSIRKCMENILKPNPELAEFITKECSGEKWDGIITRIWPNTKYLDVIVTGAM---AQYIPTLDHYSGGLPLACTMYASS 339 (598)
Q Consensus 263 ~~~~r~~l~~~l~~~p~~A~~L~~~~~~~~~~g~~~~lWP~l~~l~~~~~g~~---~~y~~~l~~~~~g~~v~~~~ygaS 339 (598)
. +...|..+..|.+...+.+. .+ -+++ ++.+++||. ...++.+++.+ |++++ +.||+|
T Consensus 185 ~----------l~~~Ps~~~~l~~~~~~~~~--~~--~~~~---lr~i~~gGe~l~~~~~~~~~~~~-g~~v~-~~YG~T 245 (437)
T 2y27_A 185 I----------IMVTPSYMLSIADEIERQGL--DP--VQSS---LRIGIFGAEPWTNDMRVAIEQRM-GIDAV-DIYGLS 245 (437)
T ss_dssp E----------EEECHHHHHHHHHHHHHTTC--CG--GGSS---CCEEEEESSCCCHHHHHHHHHHH-TSEEE-EEEEET
T ss_pred E----------EEECHHHHHHHHHHHHHcCC--Cc--ccCC---eeEEEEcCccCCHHHHHHHHHHH-CcCEE-ecCCch
Confidence 2 22377777777666543321 11 1345 566666663 46778888888 89999 999999
Q ss_pred cc-c--ccccCCCCCCCCCCceeeecCCeEEEeecCCCCCCCCCCCCCCccccccccCCCCeEEEEEccccc----cccc
Q 007558 340 EC-F--FGLNMKPMCKPSEVSYTIMPNMGYFEFLPHDPNSPPLSPESPPRLVDLAHVQVGKQYELVVTTYAG----LNRY 412 (598)
Q Consensus 340 Eg-~--~~i~~~~~~~~~~~~~~l~~~~~ffEFip~~~~~~~~~~~~~~~~v~~~eve~G~~yelvvTt~~G----L~RY 412 (598)
|. . +++. |+....++++..+..++|++++++. .+|..|+.|||+||+... +.||
T Consensus 246 E~~g~~~~~~----~~~~~~g~~~~~~~~~~~i~d~~~g---------------~~~~~g~~Gel~v~~~t~~~~~~~~y 306 (437)
T 2y27_A 246 EVMGPGVASE----CVETKDGPTIWEDHFYPEIIDPETG---------------EVLPDGELGELVFTSLTKEALPIIRY 306 (437)
T ss_dssp TTTEEEEEEC----CTTTCSSCEECTTTEEEEEECTTTC---------------CBCCTTCCEEEEEEESSCSSSCCCSE
T ss_pred hhcCCeeEEe----cCCCCCceeEccCceEEEEEcCCCC---------------CCCCCCCccEEEEecCCcCCchhhee
Confidence 95 2 3432 2222225666556678899886532 134679999999986532 6789
Q ss_pred ccCCEEEEeee-eCCCCeE-EEEeecCceecccccccCHHHHHHHHHHH
Q 007558 413 RVGDILLVTGY-YNSAPQF-RFVKRKNVLLSIDSDKTDEAELQKGIDNA 459 (598)
Q Consensus 413 r~GDvV~v~gf-~~~~P~i-~f~gR~~~~l~~~GEki~e~~v~~av~~a 459 (598)
+|||+++++.. -...|+| .|+||.+|+++++|++|++.+||++|.+.
T Consensus 307 ~TGDl~~~~~~~G~~~~~i~~i~GR~~d~i~~~G~~v~p~eiE~~l~~~ 355 (437)
T 2y27_A 307 RTRDLTRLLPGTARTMRRMEKITGRSDDMMIVRGVNVFPTQIEEQLLKQ 355 (437)
T ss_dssp EEEEEECEECCSSSSSCEECCCCEEGGGCEEETTEEECHHHHHHHHTTC
T ss_pred ecCCEEEEeCCCCCCccccCccccccCCeEEECCeEECHHHHHHHHHhC
Confidence 99999999852 1235677 89999999999999999999999999663
No 7
>3hgu_A EHPF; phenazine, antibiotic, biosynthetic protein; 1.95A {Pantoea agglomerans} PDB: 3hgv_A 3l2k_A*
Probab=99.62 E-value=1.3e-15 Score=160.88 Aligned_cols=306 Identities=10% Similarity=0.072 Sum_probs=155.3
Q ss_pred HHHHHHHHHHHhc-C---CChhhHhc----CCC---CCCCHHHHhhcCCCcccccchH-HHHHHHcCCCcccccCCccce
Q 007558 36 VQERVLAAILSRN-G---ETEYLRRF----NLD---GATDRDTFKSKVPVVTYEDLQP-EIQRIANGDRSAILSSHPVSE 103 (598)
Q Consensus 36 ~Q~~~L~~iL~~~-~---~T~ygr~~----gf~---~i~s~edf~~~vPl~~Yed~~p-~ier~~~Ge~~~ll~~~pi~~ 103 (598)
.+++.|+++++.+ . +++|||++ |++ +|++++|++ ++|+++ ++++. +.+.+.. .. +..+.+.+
T Consensus 22 ~~~~~l~~~~~~~~~~~~~~p~Yr~~~~~~g~~p~~~i~~~~dl~-~lP~~~-~~l~~~~~~~~~p---~~-~~~~~~a~ 95 (369)
T 3hgu_A 22 DTNNFVQALMRWHFSKETGSPFWLGMREQLNFDPIKDVKTINDLR-QFSDIS-HCLRQEPVANLVP---QG-LPADSHPQ 95 (369)
T ss_dssp CHHHHHHHHHHHHHSTTTSCHHHHHHGGGSSSCHHHHCCSTGGGG-GSCCCG-GGGTTSCGGGGSC---TT-SCTTCCCE
T ss_pred CHHHHHHHHHHHHcCCCCCCHHHHHHHHhcCCChhHhCCCHHHHh-hCCCch-hhhhcCCHHHcCC---cc-CCccccEE
Confidence 5678899999975 7 99999964 553 688999995 899999 99875 3222210 01 14455668
Q ss_pred eecccccCCCCcccccCChHHHHHHHHHHHHHHHHHhhcC--CCCCCCceEEEEecccccccCCCceeeccccccccccc
Q 007558 104 FLTSSGTSAGERKLMPTIHEELDRRQLLFSLLMPVMNLYV--PGLDKGKGLYFLFVKAETKTASGLLARPVLTSYYKSEQ 181 (598)
Q Consensus 104 f~~TSGTT~G~~K~IP~T~~~~~~~~~~~~~~~~~~~~~~--p~~~~gk~l~~~~~~~~~~t~~Gip~g~~s~~~~~~~~ 181 (598)
...||||| |+||-+.+|...+...... ..+.. .++..+..+... .+...+. .|+.
T Consensus 96 i~~TSGTT-G~PKgv~~t~~~~~~~~~~-------~~~~~~~~~~~~~d~~l~~-~p~g~~~-~g~~------------- 152 (369)
T 3hgu_A 96 VYESGGTT-GAPKYVVAYDAWIEALISW-------RMSGYQHRPGRPSGNTLAA-IPTGPHI-VGAI------------- 152 (369)
T ss_dssp EEEECC----CCEEEEECHHHHHHHHHH-------HTTTTTTSTTCCCCEEEEC-SCCTTCH-HHHH-------------
T ss_pred EEECCCCC-CCCCEEEECHHHHHHHHHH-------HHhhHHhhCCCCcceEEEe-cCCCchh-hhHH-------------
Confidence 89999999 8999999999876442211 11111 122223222211 1100000 0000
Q ss_pred ccCCCCCCCccccCchhhhccCChhhHHHHHHHhhhccccceeEEEeccHHH----------HHHHHHHHHHHHHHHHHH
Q 007558 182 FKTRPYDPFNVYTSPDEAILCVDSFQSMYIQMLCGLIMREEVLRVGAVFASG----------LLRAIRFLQLNWKQLADD 251 (598)
Q Consensus 182 ~~~~~~~~~~~~~~P~~v~~~~d~~~~~Y~~Ll~~L~~~~~v~~i~~~~~~~----------ll~~~~~l~~~w~~l~~d 251 (598)
..+..++.+. ..+...+.+. ....-...+...+++++.
T Consensus 153 --------------------------~~~~~~~~G~------~v~~~~~dp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 200 (369)
T 3hgu_A 153 --------------------------NKERALRLGG------MFFSIDIDPRWVKRSLSEGDTATVRKYTHHLVDQVQNT 200 (369)
T ss_dssp --------------------------HHHHHHHTTS------CEECCCCCHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred --------------------------HHHHHHHcCC------EEECccCChHHHHHhhcccchhhhHHHHHHHHHHHHHH
Confidence 0000011100 0111011111 001111123334455556
Q ss_pred HHcccCCCCCCChhhhhhhhhccCCCHHHHHHHHHHhccCCCcccccccCCCCceeEEEEeCch---hhhHHHHH-hhcC
Q 007558 252 ISAGTLNPNVTDPSIRKCMENILKPNPELAEFITKECSGEKWDGIITRIWPNTKYLDVIVTGAM---AQYIPTLD-HYSG 327 (598)
Q Consensus 252 I~~gt~~~~i~~~~~r~~l~~~l~~~p~~A~~L~~~~~~~~~~g~~~~lWP~l~~l~~~~~g~~---~~y~~~l~-~~~~ 327 (598)
|++. +++.. ...|..+..|.+.... ...-.++ ++.+++||. ...+++++ +.||
T Consensus 201 i~~~----~~t~l----------~~~Ps~~~~l~~~~~~------~~~~~~~---lr~i~~gGe~l~~~~~~~~~~~~~p 257 (369)
T 3hgu_A 201 LMNQ----DIRFL----------VTTPPVLRELLKRPEV------VLQMKQS---LAQITLGGTELNLDEIKFIASEILP 257 (369)
T ss_dssp HHHS----CEEEE----------EECHHHHHHHTTCHHH------HHHHHHH---CSEEEEESSCCCHHHHHHHHHHTCT
T ss_pred HHhC----CCCEE----------EeCHHHHHHHHhhhhh------hccccCC---eeEEEECCccCCHHHHHHHHHHhCC
Confidence 6664 22222 2356666665432110 0011224 566666763 56778888 8888
Q ss_pred CCCeeccccccccccccccCCCCCCCCCCceeee----cCCeEEEeecCCCCCCCCCCCCCCccccccccCCCCeEEEEE
Q 007558 328 GLPLACTMYASSECFFGLNMKPMCKPSEVSYTIM----PNMGYFEFLPHDPNSPPLSPESPPRLVDLAHVQVGKQYELVV 403 (598)
Q Consensus 328 g~~v~~~~ygaSEg~~~i~~~~~~~~~~~~~~l~----~~~~ffEFip~~~~~~~~~~~~~~~~v~~~eve~G~~yelvv 403 (598)
+++++ +.||+||+.... ..|+....+.++. .....++.+++++. ..|.+|+.|||+|
T Consensus 258 ~~~v~-~~YG~TE~~~~~---~~~~~~~~G~~~~~~~~~~~~~v~ivD~~~g---------------~~vp~G~~GEl~v 318 (369)
T 3hgu_A 258 DCEFS-ASYGSTSALGVS---RSLLITSESQQVIYDSFSPFITYDVVDSITA---------------QTVEYGERGNVIV 318 (369)
T ss_dssp TSEEE-EEEEEGGGTEEE---EECCBCTTCSSCEEECCTTTEEEEEECTTTC---------------SBCCTTCEEEEEE
T ss_pred CcEEE-cccCchhhhcce---eccccccCCCcccccCCCCCeEEEEECCCCC---------------cCCCCCCceEEEE
Confidence 89999 999999964322 2333211233322 12345667764332 2456899999999
Q ss_pred cccc---cccccccCCEEEEeeeeCCCC-----eEEEEeecCceecccc
Q 007558 404 TTYA---GLNRYRVGDILLVTGYYNSAP-----QFRFVKRKNVLLSIDS 444 (598)
Q Consensus 404 Tt~~---GL~RYr~GDvV~v~gf~~~~P-----~i~f~gR~~~~l~~~G 444 (598)
|++. -+.||+|||+.+.......-+ -++.++|.++...+.|
T Consensus 319 t~l~~~~~l~ry~tgD~~~~~~~~~g~~~d~~~~v~~~~~~~~~~~i~g 367 (369)
T 3hgu_A 319 THLSPWAFYPRVAERDTAIRLPGVSGFAGDRLADIEPLKISEGRKVIEG 367 (369)
T ss_dssp EEEETTEEEEEEEEEEEEEEECCSTTCSSCEEEEEEECC----------
T ss_pred EEcCcccccccccCCceEEEecCCCCCcCcccccceeccccCCCceeee
Confidence 9853 299999999998775322211 3455566554444444
No 8
>3etc_A AMP-binding protein; adenylate-forming acyl-COA synthetase ligase, ligase; HET: PGE 1PE EPE; 2.10A {Methanosarcina acetivorans}
Probab=99.58 E-value=2.4e-13 Score=152.53 Aligned_cols=128 Identities=19% Similarity=0.338 Sum_probs=90.9
Q ss_pred eEEEEeCch---hhhHHHHHhhcCCCCeeccccccccccccccCCCCC--CCCCCceeeecCCeEEEeecCCCCCCCCCC
Q 007558 307 LDVIVTGAM---AQYIPTLDHYSGGLPLACTMYASSECFFGLNMKPMC--KPSEVSYTIMPNMGYFEFLPHDPNSPPLSP 381 (598)
Q Consensus 307 l~~~~~g~~---~~y~~~l~~~~~g~~v~~~~ygaSEg~~~i~~~~~~--~~~~~~~~l~~~~~ffEFip~~~~~~~~~~ 381 (598)
++.+++||. ....+++++.+ |++++ +.||+||+.+.+...+.. .+...+. ..|+. -++.++++.
T Consensus 343 lr~i~~gGe~l~~~~~~~~~~~~-g~~i~-~~YG~TE~~~~~~~~~~~~~~~~~~G~-p~~~~-~v~ivd~~g------- 411 (580)
T 3etc_A 343 LKYAVVAGEPLNPEVFNRFLEFT-GIKLM-EGFGQTETVVTIATFPWMEPKPGSIGK-PTPGY-KIELMDRDG------- 411 (580)
T ss_dssp CCEEEECSSCCCHHHHHHHHHHH-SCCCE-EEECCTTSSCCEECCTTSCCCTTCCBE-ECTTC-EEEEECTTS-------
T ss_pred ceEEEEccCCCCHHHHHHHHHHh-CCeEe-cccccccccceeecCCCCCCCCCcccc-CCCCC-EEEEECCCC-------
Confidence 677777773 45667777778 89999 999999975433221211 1111122 22333 345555331
Q ss_pred CCCCccccccccCCCCeEEEEEccc--------ccccc-------------cccCCEEEEeeeeCCCCeEEEEeecCcee
Q 007558 382 ESPPRLVDLAHVQVGKQYELVVTTY--------AGLNR-------------YRVGDILLVTGYYNSAPQFRFVKRKNVLL 440 (598)
Q Consensus 382 ~~~~~~v~~~eve~G~~yelvvTt~--------~GL~R-------------Yr~GDvV~v~gf~~~~P~i~f~gR~~~~l 440 (598)
.++.+|+.|||+|++. .|||+ |+|||+++++ ....+.|+||.+|+|
T Consensus 412 ---------~~~~~g~~GEl~v~~~~g~~~~~~~gY~~~p~~t~~~f~~gwy~TGDlg~~d----~dG~l~~~GR~dd~I 478 (580)
T 3etc_A 412 ---------RLCEVGEEGEIVINTMEGKPVGLFVHYGKDPERTEETWHDGYYHTGDMAWMD----EDGYLWFVGRADDII 478 (580)
T ss_dssp ---------CBCCTTCCEEEEEECTTCCCTTCCCEETTCHHHHHHHEETTEEEEEEEEEEC----TTSCEEEEEESSSCE
T ss_pred ---------CCCCCCCceEEEEecCCCCCCeeeccccCCHhHHHhhcCCCEEecCcEEEEC----CCCcEEEEecCCCEE
Confidence 2457899999999752 45665 9999999997 367899999999999
Q ss_pred cccccccCHHHHHHHHHH
Q 007558 441 SIDSDKTDEAELQKGIDN 458 (598)
Q Consensus 441 ~~~GEki~e~~v~~av~~ 458 (598)
++.|++|.+.+||.+|.+
T Consensus 479 k~~G~~I~p~eIE~~l~~ 496 (580)
T 3etc_A 479 KTSGYKVGPFEVESALIQ 496 (580)
T ss_dssp EETTEEECHHHHHHHHTT
T ss_pred EECCEEECHHHHHHHHHh
Confidence 999999999999999965
No 9
>2d1s_A Luciferase, luciferin 4-monooxygenase; alpha/beta, beta barrel, alpha+beta, riken structural genomics/proteomics initiative, RSGI; HET: SLU; 1.30A {Luciola cruciata} PDB: 2d1q_A* 2d1r_A* 2d1t_A*
Probab=99.55 E-value=5.4e-13 Score=148.55 Aligned_cols=151 Identities=18% Similarity=0.166 Sum_probs=100.3
Q ss_pred CHHHHHHHHHHhccCCCcccccccCCCCceeEEEEeCch---hhhHHHHHhhcCCCCeeccccccccccccccCCCCC--
Q 007558 277 NPELAEFITKECSGEKWDGIITRIWPNTKYLDVIVTGAM---AQYIPTLDHYSGGLPLACTMYASSECFFGLNMKPMC-- 351 (598)
Q Consensus 277 ~p~~A~~L~~~~~~~~~~g~~~~lWP~l~~l~~~~~g~~---~~y~~~l~~~~~g~~v~~~~ygaSEg~~~i~~~~~~-- 351 (598)
.|..+..|.+.... -..-+++ ++.+++||. ...++++++.+++++++ +.||+||+...+...+..
T Consensus 290 ~P~~~~~l~~~~~~------~~~~l~~---lr~i~~gG~~l~~~~~~~~~~~~~~~~i~-~~YG~TE~~~~~~~~~~~~~ 359 (548)
T 2d1s_A 290 VPTLFAILNKSELL------NKYDLSN---LVEIASGGAPLSKEVGEAVARRFNLPGVR-QGYGLTETTSAIIITPEGDD 359 (548)
T ss_dssp CHHHHHHHHHCSCG------GGSCCTT---CCEEEECSSCCCHHHHHHHHHHTTCSCCE-EEEECGGGSSEEEECCTTCC
T ss_pred cHHHHHHHHhCccc------ccccccc---eeEEEEcCccCCHHHHHHHHHHcCCCcee-eccccccccceeeecCcccC
Confidence 66666666543211 0112344 667777773 45678888888888898 999999974322111111
Q ss_pred CCCCCceeeecCCeEEEeecCCCCCCCCCCCCCCccccccccCCCCeEEEEEcc---cccccc--------------ccc
Q 007558 352 KPSEVSYTIMPNMGYFEFLPHDPNSPPLSPESPPRLVDLAHVQVGKQYELVVTT---YAGLNR--------------YRV 414 (598)
Q Consensus 352 ~~~~~~~~l~~~~~ffEFip~~~~~~~~~~~~~~~~v~~~eve~G~~yelvvTt---~~GL~R--------------Yr~ 414 (598)
.....+. ..++. -.+.+++++. .+|.+|+.|||+|+. ..|||. |+|
T Consensus 360 ~~~~~G~-~~~~~-~~~i~d~~~~---------------~~~~~g~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~g~~~T 422 (548)
T 2d1s_A 360 KPGASGK-VVPLF-KAKVIDLDTK---------------KSLGPNRRGEVCVKGPMLMKGYVNNPEATKELIDEEGWLHT 422 (548)
T ss_dssp CTTCCBE-ECTTC-EEEEECTTTC---------------CBCCTTCCEEEEEESTTSCSEETTCHHHHHHHBCTTSCEEE
T ss_pred CCCCCCc-cCCCc-eEEEEeCCcC---------------ccCCCCCCeEEEECCHHHhhhhcCChHHhhhcccCCcEEEc
Confidence 1111122 22332 3455553321 245679999999975 356663 999
Q ss_pred CCEEEEeeeeCCCCeEEEEeecCceecccccccCHHHHHHHHHH
Q 007558 415 GDILLVTGYYNSAPQFRFVKRKNVLLSIDSDKTDEAELQKGIDN 458 (598)
Q Consensus 415 GDvV~v~gf~~~~P~i~f~gR~~~~l~~~GEki~e~~v~~av~~ 458 (598)
||+++++. ...+.|+||.+|+++++|++|++.+||++|.+
T Consensus 423 GDl~~~~~----dG~l~~~GR~~d~ik~~G~~v~p~eIE~~l~~ 462 (548)
T 2d1s_A 423 GDIGYYDE----EKHFFIVDRLKSLIKYKGYQVPPAELESVLLQ 462 (548)
T ss_dssp EEEEEECT----TCCEEEEEEGGGCBCBTTCCBCHHHHHHHHHT
T ss_pred cCEEEEcC----CCeEEEeccccceEEECCEEECHHHHHHHHHh
Confidence 99999983 56899999999999999999999999999965
No 10
>3e7w_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, non-ribosomal peptide synthetase, NRPS, adenylation domain, D-alanylation; HET: AMP; 2.28A {Bacillus subtilis} PDB: 3e7x_A*
Probab=99.53 E-value=1.6e-12 Score=143.29 Aligned_cols=149 Identities=13% Similarity=0.210 Sum_probs=97.5
Q ss_pred CHHHHHHHHHHhccCCCcccccccCCCCceeEEEEeCch---hhhHHHHHhhcCCCCeeccccccccccccccC---CC-
Q 007558 277 NPELAEFITKECSGEKWDGIITRIWPNTKYLDVIVTGAM---AQYIPTLDHYSGGLPLACTMYASSECFFGLNM---KP- 349 (598)
Q Consensus 277 ~p~~A~~L~~~~~~~~~~g~~~~lWP~l~~l~~~~~g~~---~~y~~~l~~~~~g~~v~~~~ygaSEg~~~i~~---~~- 349 (598)
.|..+..|..... ......+. ++.+++||. ....+++++.+++++++ +.||+||+...+.. ..
T Consensus 241 ~P~~~~~l~~~~~------~~~~~~~~---l~~~~~~G~~l~~~~~~~~~~~~~~~~i~-~~YG~TE~~~~~~~~~~~~~ 310 (511)
T 3e7w_A 241 TPSFVQMCLMDPG------FSQDLLPH---ADTFMFCGEVLPVSVAKALLERFPKAKIF-NTYGPTEATVAVTSVEITND 310 (511)
T ss_dssp CHHHHHHHHTSTT------CSTTTCTT---CCEEEECSSCCCHHHHHHHHHHCTTCEEE-ECCCCGGGSSCSEEEEECHH
T ss_pred cHHHHHHHHhccc------cccccCCc---ccEEEEecCCCCHHHHHHHHHHCCCcEEE-eCcccchheeeeeEEecccc
Confidence 5666655543221 12233455 566666663 45667888888899999 99999996432210 00
Q ss_pred ---CCCCCCCceeeecCCeEEEeecCCCCCCCCCCCCCCccccccccCCCCeEEEEEcc---ccccc-------------
Q 007558 350 ---MCKPSEVSYTIMPNMGYFEFLPHDPNSPPLSPESPPRLVDLAHVQVGKQYELVVTT---YAGLN------------- 410 (598)
Q Consensus 350 ---~~~~~~~~~~l~~~~~ffEFip~~~~~~~~~~~~~~~~v~~~eve~G~~yelvvTt---~~GL~------------- 410 (598)
.+.....+. ..++. -++.++.+. .+|.+|+.|||+|+. ..|||
T Consensus 311 ~~~~~~~~~~G~-~~~~~-~~~i~d~~g----------------~~~~~g~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~ 372 (511)
T 3e7w_A 311 VISRSESLPVGF-AKPDM-NIFIMDEEG----------------QPLPEGEKGEIVIAGPSVSRGYLGEPELTEKAFFSH 372 (511)
T ss_dssp HHTTCSSCCCBE-ECTTC-EEEEECTTS----------------CBCCTTCCEEEEEESTTSCCCBTTCHHHHHHHEEES
T ss_pred ccccCCcCCCcc-eeCCC-EEEEECCCC----------------CCCCCCCceEEEEecCccChhhCCCcccchhhhcCC
Confidence 000000111 22332 244444321 245789999999974 35665
Q ss_pred ----ccccCCEEEEeeeeCCCCeEEEEeecCceecccccccCHHHHHHHHHH
Q 007558 411 ----RYRVGDILLVTGYYNSAPQFRFVKRKNVLLSIDSDKTDEAELQKGIDN 458 (598)
Q Consensus 411 ----RYr~GDvV~v~gf~~~~P~i~f~gR~~~~l~~~GEki~e~~v~~av~~ 458 (598)
.|+|||++++. ...+.|+||.+|+|+++|++|++.+||++|.+
T Consensus 373 ~g~~~~~TGDlg~~~-----dG~l~~~GR~~d~ik~~G~~v~p~eIE~~l~~ 419 (511)
T 3e7w_A 373 EGQWAYRTGDAGFIQ-----DGQIFCQGRLDFQIKLHGYRMELEEIEFHVRQ 419 (511)
T ss_dssp SSSEEEEEEEEEEEE-----TTEEEEEEESSSEEEETTEEEEHHHHHHHHHH
T ss_pred CCCEEEeCCCeEEcc-----CCeEEEEccccCEEEECCEEeCHHHHHHHHHh
Confidence 49999999884 46899999999999999999999999999976
No 11
>3ni2_A 4-coumarate:COA ligase; 4CL, phenylpropanoid biosynthesis; HET: AYL EPE; 1.90A {Populus tomentosa} PDB: 3a9v_A* 3a9u_A*
Probab=99.51 E-value=4.7e-13 Score=148.45 Aligned_cols=130 Identities=18% Similarity=0.224 Sum_probs=91.4
Q ss_pred eEEEEeCch---hhhHHHHHhhcCCCCeeccccccccccc--cccC----CCC-CCCCCCceeeecCCeEEEeecCCCCC
Q 007558 307 LDVIVTGAM---AQYIPTLDHYSGGLPLACTMYASSECFF--GLNM----KPM-CKPSEVSYTIMPNMGYFEFLPHDPNS 376 (598)
Q Consensus 307 l~~~~~g~~---~~y~~~l~~~~~g~~v~~~~ygaSEg~~--~i~~----~~~-~~~~~~~~~l~~~~~ffEFip~~~~~ 376 (598)
++.+++||. ....+++++.+++++++ +.||+||+.. +.+. .+. ..+...+. ..++. -++.+++++.
T Consensus 299 lr~i~~gGe~l~~~~~~~~~~~~~~~~l~-~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~G~-~~~~~-~~~i~d~~~~- 374 (536)
T 3ni2_A 299 LRMIKSGGAPLGKELEDTVRAKFPQARLG-QGYGMTEAGPVLAMCLAFAKEPFDIKPGACGT-VVRNA-EMKIVDPETG- 374 (536)
T ss_dssp CCEEEEESSCCCHHHHHHHHHHCTTSEEE-EEEECGGGSSEEEECGGGSSSCCCCCTTCCCE-ECSSC-EEEEECTTTC-
T ss_pred ceEEEECCCCCCHHHHHHHHHHCCCCCcc-ccccccccchhhhcccccCCccccCCCCCeeE-eCCCc-EEEEEeCCCC-
Confidence 667777773 45667888888899999 9999999742 2211 000 01111122 22332 3455553322
Q ss_pred CCCCCCCCCccccccccCCCCeEEEEEcc---cccccc--------------cccCCEEEEeeeeCCCCeEEEEeecCce
Q 007558 377 PPLSPESPPRLVDLAHVQVGKQYELVVTT---YAGLNR--------------YRVGDILLVTGYYNSAPQFRFVKRKNVL 439 (598)
Q Consensus 377 ~~~~~~~~~~~v~~~eve~G~~yelvvTt---~~GL~R--------------Yr~GDvV~v~gf~~~~P~i~f~gR~~~~ 439 (598)
.+|..|+.|||+|+. ..|||+ |+|||+++++. ...+.|+||.+|+
T Consensus 375 --------------~~~~~g~~GEl~v~g~~v~~GY~~~p~~t~~~~~~~g~~~TGDl~~~~~----dG~l~~~GR~dd~ 436 (536)
T 3ni2_A 375 --------------ASLPRNQPGEICIRGDQIMKGYLNDPEATSRTIDKEGWLHTGDIGYIDD----DDELFIVDRLKEL 436 (536)
T ss_dssp --------------CBCCTTCCEEEEEESTTSCSEETTCHHHHHHHBCTTSCEEEEEEEEECT----TSCEEEEEECSCC
T ss_pred --------------cCCCCCCccEEEEeCcccchhhcCChhHHHhhccCCCceEcccEEEEcC----CceEEEEecccce
Confidence 245679999999974 467764 99999999973 6789999999999
Q ss_pred ecccccccCHHHHHHHHHH
Q 007558 440 LSIDSDKTDEAELQKGIDN 458 (598)
Q Consensus 440 l~~~GEki~e~~v~~av~~ 458 (598)
++++|++|.+.+||+++.+
T Consensus 437 ik~~G~~v~p~eIE~~l~~ 455 (536)
T 3ni2_A 437 IKYKGFQVAPAELEALLIA 455 (536)
T ss_dssp EEETTEEECHHHHHHHHHT
T ss_pred EEECCEEECHHHHHHHHHh
Confidence 9999999999999999965
No 12
>3fce_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, AMP-forming domain, adenylation, D-alanine protein ligase, ATP complex; HET: ATP; 1.90A {Bacillus cereus} PDB: 3fcc_A* 3dhv_A*
Probab=99.51 E-value=5.7e-13 Score=146.74 Aligned_cols=128 Identities=13% Similarity=0.183 Sum_probs=88.2
Q ss_pred eEEEEeCch---hhhHHHHHhhcCCCCeeccccccccccccccCCCCC-------CCCCCceeeecCCeEEEeecCCCCC
Q 007558 307 LDVIVTGAM---AQYIPTLDHYSGGLPLACTMYASSECFFGLNMKPMC-------KPSEVSYTIMPNMGYFEFLPHDPNS 376 (598)
Q Consensus 307 l~~~~~g~~---~~y~~~l~~~~~g~~v~~~~ygaSEg~~~i~~~~~~-------~~~~~~~~l~~~~~ffEFip~~~~~ 376 (598)
++.+++||. ....+++++.+++++++ +.||+||+...+...+.. .....+. ..++. -...++.+ +
T Consensus 263 lr~~~~~G~~l~~~~~~~~~~~~~~~~i~-~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~G~-~~~~~-~~~i~d~~--g 337 (512)
T 3fce_A 263 MKTFLFCGEVLPNEVARKLIERFPKATIM-NTYGPTEATVAVTGIHVTEEVLDQYKSLPVGY-CKSDC-RLLIMKED--G 337 (512)
T ss_dssp CCEEEECSSCCCHHHHHHHHHHCTTCEEE-EEECCGGGSSCSEEEECCHHHHHHCSSCCCEE-ECTTC-EEEEECSS--S
T ss_pred ccEEEEecCcCCHHHHHHHHHHCCCCEEE-eCcccChhhhheeeEEeccccccccCCCcccc-ccCCc-EEEEECCC--C
Confidence 566666763 45667888888899999 999999974322100000 0001111 12222 23334422 1
Q ss_pred CCCCCCCCCccccccccCCCCeEEEEEcc---cccccc-----------------cccCCEEEEeeeeCCCCeEEEEeec
Q 007558 377 PPLSPESPPRLVDLAHVQVGKQYELVVTT---YAGLNR-----------------YRVGDILLVTGYYNSAPQFRFVKRK 436 (598)
Q Consensus 377 ~~~~~~~~~~~v~~~eve~G~~yelvvTt---~~GL~R-----------------Yr~GDvV~v~gf~~~~P~i~f~gR~ 436 (598)
.++.+|+.|||+|+. ..|||. |+|||++++. ...+.|+||.
T Consensus 338 --------------~~~~~g~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~~~~~~~~TGDlg~~~-----dG~l~i~GR~ 398 (512)
T 3fce_A 338 --------------TIAPDGEKGEIVIVGPSVSVGYLGSPELTEKAFTMIDGERAYKTGDAGYVE-----NGLLFYNGRL 398 (512)
T ss_dssp --------------CBCCTTSCEEEEEESTTSCSCBTTCHHHHHHHEEEETTEEEEEEEEEEEEE-----TTEEEEEEEG
T ss_pred --------------CCCCCCCeEEEEEeccccChhhcCCchhhhhccccCCCCEEEeCCceEEec-----CCEEEEeccc
Confidence 245679999999974 467774 9999999873 4689999999
Q ss_pred CceecccccccCHHHHHHHHHH
Q 007558 437 NVLLSIDSDKTDEAELQKGIDN 458 (598)
Q Consensus 437 ~~~l~~~GEki~e~~v~~av~~ 458 (598)
+|+++++|++|++.+||++|.+
T Consensus 399 ~d~ik~~G~~v~p~eIE~~l~~ 420 (512)
T 3fce_A 399 DFQIKLHGYRMELEEIEHHLRA 420 (512)
T ss_dssp GGCEEETTEEECHHHHHHHHHH
T ss_pred CCEEEECCEEECHHHHHHHHHh
Confidence 9999999999999999999976
No 13
>4fuq_A Malonyl COA synthetase; ANL superfamily, methylma malonate, ligase; HET: MSE; 1.70A {Rhodopseudomonas palustris} PDB: 4fut_A* 4gxr_A* 4gxq_A*
Probab=99.51 E-value=1.3e-12 Score=143.94 Aligned_cols=130 Identities=13% Similarity=0.148 Sum_probs=90.3
Q ss_pred eEEEEeCch---hhhHHHHHhhcCCCCeeccccccccccccccCCCCCCCCCCc-eeeecCCeEEEeecCCCCCCCCCCC
Q 007558 307 LDVIVTGAM---AQYIPTLDHYSGGLPLACTMYASSECFFGLNMKPMCKPSEVS-YTIMPNMGYFEFLPHDPNSPPLSPE 382 (598)
Q Consensus 307 l~~~~~g~~---~~y~~~l~~~~~g~~v~~~~ygaSEg~~~i~~~~~~~~~~~~-~~l~~~~~ffEFip~~~~~~~~~~~ 382 (598)
++.+++||. ....+++++.+ |++++ +.||+||+.+.............. ....++. -.+.+++++.
T Consensus 270 lr~~~~gg~~l~~~~~~~~~~~~-~~~~~-~~YG~TE~~~~~~~~~~~~~~~~~~G~p~~~~-~~~i~d~~~g------- 339 (503)
T 4fuq_A 270 MRLFISGSAPLLADTHREWSAKT-GHAVL-ERYGMTETNMNTSNPYDGDRVPGAVGPALPGV-SARVTDPETG------- 339 (503)
T ss_dssp CCEEEECSSCCCHHHHHHHHHHH-SCCEE-ECCEETTTEECBCCCSSSCCCTTEEEEBCTTC-EEEEECTTTC-------
T ss_pred cEEEEECCCCCCHHHHHHHHHHh-CCCcc-ceEcccccCcccccCCCCCCcCCccccCCCCe-EEEEEECCCC-------
Confidence 677777773 45567777777 78898 999999975432211111000001 1122222 3444543321
Q ss_pred CCCccccccccCCCCeEEEEEcc---cccccc--------------cccCCEEEEeeeeCCCCeEEEEeecCceeccccc
Q 007558 383 SPPRLVDLAHVQVGKQYELVVTT---YAGLNR--------------YRVGDILLVTGYYNSAPQFRFVKRKNVLLSIDSD 445 (598)
Q Consensus 383 ~~~~~v~~~eve~G~~yelvvTt---~~GL~R--------------Yr~GDvV~v~gf~~~~P~i~f~gR~~~~l~~~GE 445 (598)
.+|.+|+.|||+|+. ..|||+ |+|||+++++ ....+.|+||.+|+++++|+
T Consensus 340 --------~~~~~g~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~g~~~TGDl~~~~----~dG~l~~~GR~dd~ik~~G~ 407 (503)
T 4fuq_A 340 --------KELPRGDIGMIEVKGPNVFKGYWRMPEKTKSEFRDDGFFITGDLGKID----ERGYVHILGRGKDLVITGGF 407 (503)
T ss_dssp --------CBCCTTCCEEEEEESTTSCCCBTTCHHHHHHTBCTTSCEEEEEEEEEC----TTCEEEECCSSTTCEEETTE
T ss_pred --------CCCcCCCceEEEEECCchhhhhcCChhhhHhhhCCCCCeEcceeEEEc----CCCcEEEEecCCCEEEECCE
Confidence 245789999999974 467775 9999999997 36799999999999999999
Q ss_pred ccCHHHHHHHHHH
Q 007558 446 KTDEAELQKGIDN 458 (598)
Q Consensus 446 ki~e~~v~~av~~ 458 (598)
+|.+.|||++|.+
T Consensus 408 ~v~p~eIE~~l~~ 420 (503)
T 4fuq_A 408 NVYPKEIESEIDA 420 (503)
T ss_dssp EECHHHHHHHHHT
T ss_pred EECHHHHHHHHHh
Confidence 9999999999965
No 14
>1t5h_X 4-chlorobenzoyl COA ligase; adenylate-forming coenzyme A ligase domain alternation confo change; 2.00A {Alcaligenes SP} SCOP: e.23.1.1 PDB: 1t5d_X 3cw9_A* 3cw8_X* 2qvz_X* 2qw0_X* 3dlp_X* 2qvx_X* 2qvy_X*
Probab=99.51 E-value=1.3e-12 Score=143.77 Aligned_cols=154 Identities=14% Similarity=0.158 Sum_probs=100.3
Q ss_pred CCHHHHHHHHHHhccCCCcccccccCCCCceeEEEEeCch---hhhHHHHHhhcCCCCeeccccccccccccccCCCCCC
Q 007558 276 PNPELAEFITKECSGEKWDGIITRIWPNTKYLDVIVTGAM---AQYIPTLDHYSGGLPLACTMYASSECFFGLNMKPMCK 352 (598)
Q Consensus 276 ~~p~~A~~L~~~~~~~~~~g~~~~lWP~l~~l~~~~~g~~---~~y~~~l~~~~~g~~v~~~~ygaSEg~~~i~~~~~~~ 352 (598)
..|..+..|.+...+. . ...-+++ ++.+++||. ....+++++.+ +++++ +.||+||+.+.+... ...
T Consensus 250 ~~P~~~~~l~~~~~~~-~---~~~~l~~---lr~~~~gG~~l~~~~~~~~~~~~-~~~~~-~~YG~TE~~~~~~~~-~~~ 319 (504)
T 1t5h_X 250 ATPTHLDALAAAAAHA-G---SSLKLDS---LRHVTFAGATMPDAVLETVHQHL-PGEKV-NIYGTTEAMNSLYMR-QPK 319 (504)
T ss_dssp CCHHHHHHHHHHHCCT-T---CCCCCTT---CCEEEECCTTCCHHHHHHHHHHC-CSEEE-EEEEETTTEEEEEEE-SCS
T ss_pred eChHHHHHHHhhhccc-c---ccccCcc---ccEEEEcCCcCCHHHHHHHHHhc-Cccee-eeecccccccccccc-CCC
Confidence 3677777776654221 0 0111244 677777774 45667888888 68888 999999984333211 111
Q ss_pred CCCCceeeecCCeEEEeecCCCCCCCCCCCCCCccccccccCCCCeEEEEEc-c---cccccc-------------cccC
Q 007558 353 PSEVSYTIMPNMGYFEFLPHDPNSPPLSPESPPRLVDLAHVQVGKQYELVVT-T---YAGLNR-------------YRVG 415 (598)
Q Consensus 353 ~~~~~~~l~~~~~ffEFip~~~~~~~~~~~~~~~~v~~~eve~G~~yelvvT-t---~~GL~R-------------Yr~G 415 (598)
.... ....++. -...++.+... ...|.+|+.|||+|+ . ..|||+ |+||
T Consensus 320 ~~~~-g~p~~~~-~~~i~~~~~~~-------------~~~~~~g~~GEl~v~gg~~~~~GY~~~~~~t~~~f~~g~~~TG 384 (504)
T 1t5h_X 320 TGTE-MAPGFFS-EVRIVRIGGGV-------------DEIVANGEEGELIVAASDSAFVGYLNQPQATAEKLQDGWYRTS 384 (504)
T ss_dssp SSSE-EBCCTTC-CEEEECTTSCT-------------TCBCCTTCCEEEEEECCTTSCCCBTTCHHHHHHHEETTEEEEE
T ss_pred CCcc-ccCCCCC-ceeEEeccCCC-------------CCcCCCCCcceEEEeCCceeeceecCCchhhhhhhcCCccccC
Confidence 1111 1111221 12233322110 134678999999998 3 368887 9999
Q ss_pred CEEEEeeeeCCCCeEEEEeecCceecccccccCHHHHHHHHHH
Q 007558 416 DILLVTGYYNSAPQFRFVKRKNVLLSIDSDKTDEAELQKGIDN 458 (598)
Q Consensus 416 DvV~v~gf~~~~P~i~f~gR~~~~l~~~GEki~e~~v~~av~~ 458 (598)
|+++++. ...+.|+||.+|+++++|++|.+.+||+++.+
T Consensus 385 Dlg~~~~----dG~l~~~GR~dd~ik~~G~~v~p~eIE~~l~~ 423 (504)
T 1t5h_X 385 DVAVWTP----EGTVRILGRVDDMIISGGENIHPSEIERVLGT 423 (504)
T ss_dssp EEEEECT----TSCEEEEEEGGGCEEETTEEECHHHHHHHHTT
T ss_pred cEEEECC----CceEEEeCcccCEEEECCEEECHHHHHHHHHh
Confidence 9999983 57899999999999999999999999999964
No 15
>3rix_A Luciferase, luciferin 4-monooxygenase; oxidoreductase, photoprotein, luminescence, aspulvinone, natural product extracts; HET: 923; 1.70A {Photinus pyralis} SCOP: e.23.1.1 PDB: 1ba3_A 1lci_A* 4e5d_A* 3ies_A* 3iep_A* 3ier_A* 4g36_A* 4g37_A* 3qya_A
Probab=99.48 E-value=4.6e-13 Score=149.05 Aligned_cols=153 Identities=18% Similarity=0.156 Sum_probs=76.0
Q ss_pred CHHHHHHHHHHhccCCCcccccccCCCCceeEEEEeCch---hhhHHHHHhhcCCCCeeccccccccccccccCCCCCCC
Q 007558 277 NPELAEFITKECSGEKWDGIITRIWPNTKYLDVIVTGAM---AQYIPTLDHYSGGLPLACTMYASSECFFGLNMKPMCKP 353 (598)
Q Consensus 277 ~p~~A~~L~~~~~~~~~~g~~~~lWP~l~~l~~~~~g~~---~~y~~~l~~~~~g~~v~~~~ygaSEg~~~i~~~~~~~~ 353 (598)
.|.....|.+..... ..-+++ ++.+++||. ....+++++.++...++ +.||+||+...+...+....
T Consensus 288 ~P~~~~~l~~~~~~~------~~~l~~---lr~i~~gG~~l~~~~~~~~~~~~~~~~v~-~~YG~TE~~~~~~~~~~~~~ 357 (550)
T 3rix_A 288 VPTLFSFFAKSTLID------KYDLSN---LHEIASGGAPLSKEVGEAVAKRFHLPGIR-QGYGLTETTSAILITPEGDD 357 (550)
T ss_dssp CHHHHHHHHHCCGGG------GSCCTT---CCEEEECSSCCCHHHHHHHHHHTTCSCCE-EEEECGGGSSEEEECCTTCC
T ss_pred CcHHHHHHHhCcccc------ccCccc---ccEEEEecCCCCHHHHHHHHHHcCCCccc-cccCcCccccceecCCCCCC
Confidence 666666665533211 112345 677777773 45667888888333477 99999997443222222111
Q ss_pred CCCc-eeeecCCeEEEeecCCCCCCCCCCCCCCccccccccCCCCeEEEEEcc---cccccc--------------cccC
Q 007558 354 SEVS-YTIMPNMGYFEFLPHDPNSPPLSPESPPRLVDLAHVQVGKQYELVVTT---YAGLNR--------------YRVG 415 (598)
Q Consensus 354 ~~~~-~~l~~~~~ffEFip~~~~~~~~~~~~~~~~v~~~eve~G~~yelvvTt---~~GL~R--------------Yr~G 415 (598)
.... ....++ .-.+.+++++. .+|.+|+.|||+|+. ..|||. |+||
T Consensus 358 ~~~~vG~~~~~-~~~~i~d~~~~---------------~~~~~g~~GEl~v~g~~v~~GY~~~~~~t~~~~~~~g~~~TG 421 (550)
T 3rix_A 358 KPGAVGKVVPF-FEAKVVDLDTG---------------KTLGVNQRGELCVRGPMIMSGYVNNPEATNALIDKDGWLHSG 421 (550)
T ss_dssp CTTEEEEECTT-CEEEEECTTTC---------------CBCCTTCCEEEEEESTTSCSEETTCHHHHHHHBCTTSCEEEE
T ss_pred CCCCcccccCC-cEEEEEeCCCC---------------cCCCCCCCeEEEEeCCCcchhhcCChhhhhhhcCCCCCeecC
Confidence 1111 112233 23455554322 245679999999975 367764 9999
Q ss_pred CEEEEeeeeCCCCeEEEEeecCceecccccccCHHHHHHHHHHH
Q 007558 416 DILLVTGYYNSAPQFRFVKRKNVLLSIDSDKTDEAELQKGIDNA 459 (598)
Q Consensus 416 DvV~v~gf~~~~P~i~f~gR~~~~l~~~GEki~e~~v~~av~~a 459 (598)
|+++++. ...+.|+||.+|+++++|++|.+.+||++|.+.
T Consensus 422 Dl~~~~~----dG~l~~~GR~dd~ik~~G~~v~p~eIE~~l~~~ 461 (550)
T 3rix_A 422 DIAYWDE----DEHFFIVDRLKSLIKYKGYQVAPAELESILLQH 461 (550)
T ss_dssp EEEEECT----TCCEEEC--------------------------
T ss_pred cEEEEeC----CceEEEEecchheeEECCEEECHHHHHHHHHhC
Confidence 9999983 678999999999999999999999999999763
No 16
>1mdb_A 2,3-dihydroxybenzoate-AMP ligase; adenylation domain, peptide synthetase, antibiotic biosynthesis, siderophore formation; HET: AMP DBH; 2.15A {Bacillus subtilis} SCOP: e.23.1.1 PDB: 1md9_A* 1mdf_A
Probab=99.47 E-value=1.6e-12 Score=144.27 Aligned_cols=149 Identities=17% Similarity=0.173 Sum_probs=98.2
Q ss_pred CHHHHHHHHHHhccCCCcccccccCCCCceeEEEEeCch---hhhHHHHHhhcCCCCeeccccccccccccccCCCCCCC
Q 007558 277 NPELAEFITKECSGEKWDGIITRIWPNTKYLDVIVTGAM---AQYIPTLDHYSGGLPLACTMYASSECFFGLNMKPMCKP 353 (598)
Q Consensus 277 ~p~~A~~L~~~~~~~~~~g~~~~lWP~l~~l~~~~~g~~---~~y~~~l~~~~~g~~v~~~~ygaSEg~~~i~~~~~~~~ 353 (598)
.|..+..|.+..... ..-.++ ++.+++||. ....+++++.+ |++++ +.||+||+.+.+.. ...+.
T Consensus 279 ~P~~~~~l~~~~~~~------~~~l~~---lr~~~~gG~~l~~~~~~~~~~~~-~~~~~-~~YG~TE~~~~~~~-~~~~~ 346 (539)
T 1mdb_A 279 VPPLAMVWMDAASSR------RDDLSS---LQVLQVGGAKFSAEAARRVKAVF-GCTLQ-QVFGMAEGLVNYTR-LDDPE 346 (539)
T ss_dssp CHHHHHHHHHHHHHC------CCCCTT---CCEEEEESSCCCHHHHTTHHHHT-CSEEE-EEEECTTSCEEECC-TTSCH
T ss_pred cHHHHHHHHhCcccc------CCCccc---eeEEEEcCCCCCHHHHHHHHHHh-CCcEE-EEEcCCCCcccccC-CCCcH
Confidence 566666665544321 111245 566776763 45566777778 78888 99999998654421 11110
Q ss_pred ----CCCceeeecCCeEEEeecCCCCCCCCCCCCCCccccccccCCCCeEEEEEcc---cccccc--------------c
Q 007558 354 ----SEVSYTIMPNMGYFEFLPHDPNSPPLSPESPPRLVDLAHVQVGKQYELVVTT---YAGLNR--------------Y 412 (598)
Q Consensus 354 ----~~~~~~l~~~~~ffEFip~~~~~~~~~~~~~~~~v~~~eve~G~~yelvvTt---~~GL~R--------------Y 412 (598)
...+.. .++..-...++.+ ..+|.+|+.|||+|+. ..|||+ |
T Consensus 347 ~~~~~~~G~p-~~~~~~~~i~d~~----------------~~~~~~g~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~g~~ 409 (539)
T 1mdb_A 347 EIIVNTQGKP-MSPYDESRVWDDH----------------DRDVKPGETGHLLTRGPYTIRGYYKAEEHNAASFTEDGFY 409 (539)
T ss_dssp HHHHHCCCEE-SSTTCEEEEECTT----------------SCBCCTTCCEEEEEECTTSCSSCTTCHHHHHHHBCTTSCE
T ss_pred HhcCCCCCcc-cCCCceEEEECCC----------------CCCCcCCCcceEEeeCcccchhhcCChhhhhhhccCCCCe
Confidence 011221 2222223444422 1245789999999975 357764 9
Q ss_pred ccCCEEEEeeeeCCCCeEEEEeecCceecccccccCHHHHHHHHHH
Q 007558 413 RVGDILLVTGYYNSAPQFRFVKRKNVLLSIDSDKTDEAELQKGIDN 458 (598)
Q Consensus 413 r~GDvV~v~gf~~~~P~i~f~gR~~~~l~~~GEki~e~~v~~av~~ 458 (598)
+|||+++++. ...+.|+||.+|+++++|++|.+.+||+++.+
T Consensus 410 ~TGDlg~~~~----dG~l~~~GR~dd~ik~~G~~v~p~eIE~~l~~ 451 (539)
T 1mdb_A 410 RTGDIVRLTR----DGYIVVEGRAKDQINRGGEKVAAEEVENHLLA 451 (539)
T ss_dssp EEEEEEEECT----TSCEEEEEEGGGCEECSSCEECHHHHHHHHTT
T ss_pred ecCceEEECC----CCcEEEeccccceEEECCEEECHHHHHHHHHh
Confidence 9999999983 57899999999999999999999999999965
No 17
>2v7b_A Benzoate-coenzyme A ligase; benzoate oxidation, benzoate COA ligase; 1.84A {Burkholderia xenovorans}
Probab=99.46 E-value=1.8e-12 Score=143.29 Aligned_cols=128 Identities=12% Similarity=0.083 Sum_probs=87.3
Q ss_pred eEEEEeCch---hhhHHHHHhhcCCCCeeccccccccc-cccccCCC-CCCCCCCceeeecCCeEEEeecCCCCCCCCCC
Q 007558 307 LDVIVTGAM---AQYIPTLDHYSGGLPLACTMYASSEC-FFGLNMKP-MCKPSEVSYTIMPNMGYFEFLPHDPNSPPLSP 381 (598)
Q Consensus 307 l~~~~~g~~---~~y~~~l~~~~~g~~v~~~~ygaSEg-~~~i~~~~-~~~~~~~~~~l~~~~~ffEFip~~~~~~~~~~ 381 (598)
++.+++||. ...++++++.+ |++++ +.||+||+ .+.+...+ .+.....+. ..++ .-++.++.+.
T Consensus 302 lr~~~~gGe~l~~~~~~~~~~~~-g~~i~-~~YG~TE~~~~~~~~~~~~~~~~~~G~-p~~~-~~~~i~d~~g------- 370 (529)
T 2v7b_A 302 IRICTSAGEALPREIGERFTAHF-GCEIL-DGIGSTEMLHIFLSNRAGAVEYGTTGR-PVPG-YEIELRDEAG------- 370 (529)
T ss_dssp CCEEEECSSCCCHHHHHHHHHHH-SCCEE-EEEECTTTSSEEEECCTTCCCTTSCCE-ECTT-CEEEEECTTS-------
T ss_pred eEEEEEcCCCCCHHHHHHHHHHh-CCcee-eeEchhhcCceeeccccCCCccCCccc-CCCC-CEEEEECCCC-------
Confidence 667777763 45677888888 89999 99999997 33322111 111111122 2233 2455555321
Q ss_pred CCCCccccccccCCCCeEEEEEcc---cccccc-------------cccCCEEEEeeeeCCCCeEEEEeecCceeccccc
Q 007558 382 ESPPRLVDLAHVQVGKQYELVVTT---YAGLNR-------------YRVGDILLVTGYYNSAPQFRFVKRKNVLLSIDSD 445 (598)
Q Consensus 382 ~~~~~~v~~~eve~G~~yelvvTt---~~GL~R-------------Yr~GDvV~v~gf~~~~P~i~f~gR~~~~l~~~GE 445 (598)
.+|.+|+.|||+|+. ..|||+ |+|||+++++. ...+.|+||.+|+++++|+
T Consensus 371 ---------~~~~~g~~GEl~v~g~~~~~gY~~~~~~t~~~f~~~~~~TGDl~~~~~----~G~l~~~GR~dd~ik~~G~ 437 (529)
T 2v7b_A 371 ---------HAVPDGEVGDLYIKGPSAAVMYWNNREKSRATFLGEWIRSGDKYCRLP----NGCYVYAGRSDDMLKVSGQ 437 (529)
T ss_dssp ---------CBCCTTSCEEEEEECTTCCCCBTTCHHHHHHHEETTEEEEEEEEEECT----TSCEEEEEEGGGCBC----
T ss_pred ---------CCCCCCCccEEEEecCCcccccCCChHHHHHhhhcCCcccCceEEECC----CccEEEeCccCCeEEECCE
Confidence 245679999999975 467886 89999999984 6789999999999999999
Q ss_pred ccCHHHHHHHHHH
Q 007558 446 KTDEAELQKGIDN 458 (598)
Q Consensus 446 ki~e~~v~~av~~ 458 (598)
+|++.+||++|.+
T Consensus 438 ~v~p~eIE~~l~~ 450 (529)
T 2v7b_A 438 YVSPVEVEMVLVQ 450 (529)
T ss_dssp CBCHHHHHHHHTT
T ss_pred EECHHHHHHHHHh
Confidence 9999999999965
No 18
>3ivr_A Putative long-chain-fatty-acid COA ligase; structural genomics, PSI-2, protein S initiative, fatty acid synthesis; HET: GOL; 2.00A {Rhodopseudomonas palustris} SCOP: e.23.1.0
Probab=99.46 E-value=2.3e-13 Score=149.85 Aligned_cols=130 Identities=12% Similarity=0.103 Sum_probs=71.9
Q ss_pred eEEEEeCchhhhHHHHHhhcCCCCeeccccccccccc-cccCCCCCCCCCCceeeecCCeEEEeecCCCCCCCCCCCCCC
Q 007558 307 LDVIVTGAMAQYIPTLDHYSGGLPLACTMYASSECFF-GLNMKPMCKPSEVSYTIMPNMGYFEFLPHDPNSPPLSPESPP 385 (598)
Q Consensus 307 l~~~~~g~~~~y~~~l~~~~~g~~v~~~~ygaSEg~~-~i~~~~~~~~~~~~~~l~~~~~ffEFip~~~~~~~~~~~~~~ 385 (598)
++.+.+|+.....+++++.+++++++ +.||+||+.. +........+...+. ..++. -++.++.+.
T Consensus 274 lr~~~~~g~~~~~~~~~~~~~~~~~~-~~YG~TE~~~~~~~~~~~~~~~~~G~-p~~~~-~~~i~d~~~----------- 339 (509)
T 3ivr_A 274 LRAVTGLDTPETIERFEATCPNATFW-ATFGQSETSGLSTFAPYRDRPKSAGR-PLFWR-TVAVVDAED----------- 339 (509)
T ss_dssp CCEEEEECCHHHHHHHHHHCTTCEEE-EEEEEGGGTEEEEEEEGGGSTTSCCE-ECTTC-EEEEECTTS-----------
T ss_pred hheecccCChHHHHHHHHhcCCCeEE-cccCccccccccccCccccCCCcccc-cCCCc-EEEEECCCC-----------
Confidence 56666777666678888888899999 9999999743 221111111111222 22332 344555331
Q ss_pred ccccccccCCCCeEEEEEcc---cccccc-------------cccCCEEEEeeeeCCCCeEEEEeec--Cceeccccccc
Q 007558 386 RLVDLAHVQVGKQYELVVTT---YAGLNR-------------YRVGDILLVTGYYNSAPQFRFVKRK--NVLLSIDSDKT 447 (598)
Q Consensus 386 ~~v~~~eve~G~~yelvvTt---~~GL~R-------------Yr~GDvV~v~gf~~~~P~i~f~gR~--~~~l~~~GEki 447 (598)
.+|.+|+.|||+|+. ..|||+ |+|||+++++. ...+.|+||. +|+++++|++|
T Consensus 340 -----~~~~~g~~GEl~v~g~~~~~gY~~~~~~t~~~f~~g~~~TGDl~~~~~----dG~l~~~GR~d~~d~ik~~G~~v 410 (509)
T 3ivr_A 340 -----RPLPPGEVGEIVLRGPTVFKGYWNNAAATQHAFRNGWHHTGDMGRFDA----DGYLFYAGRAPEKELIKTGGENV 410 (509)
T ss_dssp -----CBCCTTCCEEEEEESTTSCCEETTCHHHHHHHTGGGSEEEEEEEEECT----TSCEEEEEEC-------------
T ss_pred -----CCCCCCCceEEEEecCCccccccCCHHHhHHHhhcCCcccccEEEECC----CceEEEeCCCCcceeEEECCEEE
Confidence 245789999999975 478887 99999999973 6789999999 99999999999
Q ss_pred CHHHHHHHHHHH
Q 007558 448 DEAELQKGIDNA 459 (598)
Q Consensus 448 ~e~~v~~av~~a 459 (598)
.+.+||+++.+.
T Consensus 411 ~p~eiE~~l~~~ 422 (509)
T 3ivr_A 411 YPAEVEGALKQH 422 (509)
T ss_dssp ------------
T ss_pred CHHHHHHHHHhC
Confidence 999999999763
No 19
>1pg4_A Acetyl-COA synthetase; AMP-forming, adenylate-forming, thioester-forming, ligase; HET: COA PRX; 1.75A {Salmonella enterica} SCOP: e.23.1.1 PDB: 1pg3_A* 2p2f_A* 2p2b_A* 2p2q_A* 2p2j_A* 2p20_A* 2p2m_A*
Probab=99.46 E-value=7e-12 Score=142.60 Aligned_cols=226 Identities=13% Similarity=0.082 Sum_probs=123.3
Q ss_pred eEEEEeCch---hhhHHHHHhhcC--CCCeeccccccccccccccCC-CCC---CCCCCceeeecCCeEEEeecCCCCCC
Q 007558 307 LDVIVTGAM---AQYIPTLDHYSG--GLPLACTMYASSECFFGLNMK-PMC---KPSEVSYTIMPNMGYFEFLPHDPNSP 377 (598)
Q Consensus 307 l~~~~~g~~---~~y~~~l~~~~~--g~~v~~~~ygaSEg~~~i~~~-~~~---~~~~~~~~l~~~~~ffEFip~~~~~~ 377 (598)
++.+++||. ....+.+.+.+| +++++ +.||.||....+... +.. .+...+. ..++.. ...++.+
T Consensus 380 Lr~i~~gGe~l~~~~~~~~~~~~g~~~~~i~-~~YG~TE~~~~~~~~~~~~~~~~~~s~G~-p~~g~~-v~i~d~~---- 452 (652)
T 1pg4_A 380 LRILGSVGEPINPEAWEWYWKKIGKEKCPVV-DTWWQTETGGFMITPLPGAIELKAGSATR-PFFGVQ-PALVDNE---- 452 (652)
T ss_dssp CCEEEEESSCCCHHHHHHHHHHTTTTCSCEE-EEBCCGGGSSCSBCCCTTTCCBCTTCCBS-BCTTCC-EEEECTT----
T ss_pred eEEEEEecCCCCHHHHHHHHHHhCCCCCcEE-ccccCcccccceecCCCCCcCccCCcccc-CcCCCe-EEEECCC----
Confidence 677777763 345567777773 28899 999999964322111 110 0111111 122221 2233321
Q ss_pred CCCCCCCCccccccccCCCCeEEEEEcc-----cccccc----------------cccCCEEEEeeeeCCCCeEEEEeec
Q 007558 378 PLSPESPPRLVDLAHVQVGKQYELVVTT-----YAGLNR----------------YRVGDILLVTGYYNSAPQFRFVKRK 436 (598)
Q Consensus 378 ~~~~~~~~~~v~~~eve~G~~yelvvTt-----~~GL~R----------------Yr~GDvV~v~gf~~~~P~i~f~gR~ 436 (598)
..+|..|+.|||+|+. ..|||+ |+|||+++++. ...+.|+||.
T Consensus 453 ------------g~~v~~g~~GEl~i~g~~p~~~~gY~~~~e~~~~~~~~~~~g~y~TGDlg~~d~----dG~l~i~GR~ 516 (652)
T 1pg4_A 453 ------------GHPQEGATEGNLVITDSWPGQARTLFGDHERFEQTYFSTFKNMYFSGDGARRDE----DGYYWITGRV 516 (652)
T ss_dssp ------------CCBCCSSEEEEEEECSCCTTCCCEETTCHHHHHHHHHSSSTTSEEEEEEEEECT----TSCEEEEEES
T ss_pred ------------CCCcCCCceEEEEEccCCCchhhhhcCCHHHHHhhhhhcCCCEEECCcEEEEcC----CCcEEEEecC
Confidence 1245679999999976 244542 99999999983 6789999999
Q ss_pred CceecccccccCHHHHHHHHHHHHHHhhhcCCeEEeEEEee--cCCCCCceEEEEEEEeecccCCCCChHHHHHHHHHHH
Q 007558 437 NVLLSIDSDKTDEAELQKGIDNASLLLKEFNASVIEYTSYA--DTTTIPGHYVIFWELLVKDAANSPSDEVLNQCCLVVE 514 (598)
Q Consensus 437 ~~~l~~~GEki~e~~v~~av~~a~~~l~~~g~~l~~f~~~~--d~~~~p~~Y~l~~E~e~~~~~~~~~~~~l~~~~~~ld 514 (598)
+|+|+++|++|...|||++|.+. .+ |.+..|+. +. .....-+.|+.+.. + ...+.+..+++.+.+.
T Consensus 517 dd~Ik~~G~rI~~~eIE~~l~~~------p~--V~ea~Vvg~~~~-~~g~~l~a~Vv~~~-~--~~~~~~~~~~l~~~l~ 584 (652)
T 1pg4_A 517 DDVLNVSGHRLGTAEIESALVAH------PK--IAEAAVVGIPHA-IKGQAIYAYVTLNH-G--EEPSPELYAEVRNWVR 584 (652)
T ss_dssp SSEEEETTEEEEHHHHHHHHHHS------TT--EEEEEEEEEEET-TTEEEEEEEEEECT-T--CCCCHHHHHHHHHHHH
T ss_pred CCEEEECCEEECHHHHHHHHHhC------CC--cceEEEEEEEcC-CCCeEEEEEEEECC-C--CCCCHHHHHHHHHHHH
Confidence 99999999999999999999652 22 44555432 21 11113345666542 2 1233333444555555
Q ss_pred HHhChhhHhccccCCccCCeEEEEeC------CChHHH--HHHHHHhcCCCCCCCCCCcccCCHhHHHHHhccc
Q 007558 515 ESLNSVYRQGRVADNSIGPLEIRVVK------NGTFEE--LMDYAISRGASINQYKAPRCVSFTPILELLNGRV 580 (598)
Q Consensus 515 ~~Ln~~Y~~~R~~~g~l~p~~v~~v~------~gtF~~--~~~~~~~~G~~~~Q~K~Pr~~~~~~~~~~L~~~~ 580 (598)
+.| +.|. .|-.+++|. .|-..+ +++.. .+. ..+.+.+--+.|++.++.+.+.+
T Consensus 585 ~~l-~~~~---------~P~~i~~v~~lP~T~sGKi~R~~L~~~~--~~~-~~~~~~~~~l~~p~~~~~~~~~~ 645 (652)
T 1pg4_A 585 KEI-GPLA---------TPDVLHWTDSLPKTRSGKIMRRILRKIA--AGD-TSNLGDTSTLADPGVVEKLLEEK 645 (652)
T ss_dssp HHT-CGGG---------CCSEEEECSCCCBCTTSCBCHHHHHHHH--HTC-----------CCTTHHHHHHHHH
T ss_pred HhC-CCCc---------CCeEEEEcCCCCCCCCccchHHHHHHHH--hCC-CCCCCCccccCCHHHHHHHHHHh
Confidence 555 2222 233444443 343332 32222 222 13556667778999998887643
No 20
>3kxw_A Saframycin MX1 synthetase B; fatty acid AMP ligase, SGX, acyl adenylate, structural genom 2, protein structure initiative; HET: 1ZZ; 1.85A {Legionella pneumophila subsp} PDB: 3lnv_A*
Probab=99.46 E-value=8.1e-13 Score=147.82 Aligned_cols=63 Identities=14% Similarity=0.172 Sum_probs=54.3
Q ss_pred ccCCCCeEEEEEcc---ccccc----------------------ccccCCEEEEeeeeCCCCeEEEEeecCceecccccc
Q 007558 392 HVQVGKQYELVVTT---YAGLN----------------------RYRVGDILLVTGYYNSAPQFRFVKRKNVLLSIDSDK 446 (598)
Q Consensus 392 eve~G~~yelvvTt---~~GL~----------------------RYr~GDvV~v~gf~~~~P~i~f~gR~~~~l~~~GEk 446 (598)
++..|+.|||+|+. ..||| .|+|||+++++ ...+.|+||.+|+|+++|++
T Consensus 393 ~~~~g~~GEl~v~g~~v~~GY~~~p~~t~~~f~~~~~~~~~g~~~~~TGDlg~~d-----dG~l~~~GR~dd~Ik~~G~~ 467 (590)
T 3kxw_A 393 PCDFDQVGEIWVQSNSVAKGYWNQPEETRHAFAGKIKDDERSAIYLRTGDLGFLH-----ENELYVTGRIKDLIIIYGKN 467 (590)
T ss_dssp BCCTTBCEEEEEESTTSCCCBTTCHHHHHHHHCBCCTTC---CCBEEEEEEEEEE-----TTEEEEEEESSCHHHHHHHT
T ss_pred CCCCCCEEEEEEeCCcccccccCChhHHHHHHhccccCCCCCCcEEecCcEEEEE-----CCEEEEEcCccceEEECCEe
Confidence 56789999999975 35665 59999999887 35799999999999999999
Q ss_pred cCHHHHHHHHHHH
Q 007558 447 TDEAELQKGIDNA 459 (598)
Q Consensus 447 i~e~~v~~av~~a 459 (598)
|++.+||.++...
T Consensus 468 v~p~eIE~~l~~~ 480 (590)
T 3kxw_A 468 HYPQDIEFSLMHS 480 (590)
T ss_dssp THHHHHHHHHHHS
T ss_pred cCHHHHHHHHHhc
Confidence 9999999999553
No 21
>3o83_A Peptide arylation enzyme; ligase, adenylation of 2,3-dihydroxybenzoate and transfer to pantetheine cofactor of BASF; HET: IXN; 1.90A {Acinetobacter baumannii} SCOP: e.23.1.0 PDB: 3o82_A* 3o84_A* 3u16_A* 3u17_A*
Probab=99.45 E-value=4.4e-13 Score=149.03 Aligned_cols=151 Identities=14% Similarity=0.148 Sum_probs=79.5
Q ss_pred CHHHHHHHHHHhccCCCcccccccCCCCceeEEEEeCch---hhhHHHHHhhcCCCCeeccccccccccccccCCCCCC-
Q 007558 277 NPELAEFITKECSGEKWDGIITRIWPNTKYLDVIVTGAM---AQYIPTLDHYSGGLPLACTMYASSECFFGLNMKPMCK- 352 (598)
Q Consensus 277 ~p~~A~~L~~~~~~~~~~g~~~~lWP~l~~l~~~~~g~~---~~y~~~l~~~~~g~~v~~~~ygaSEg~~~i~~~~~~~- 352 (598)
.|..+..|.+..... ..-.++ ++.+++||. ....+++++.+ |++++ +.||+||+.+.........
T Consensus 288 ~P~~~~~l~~~~~~~------~~~~~~---lr~i~~gG~~l~~~~~~~~~~~~-~~~~~-~~YG~TE~~~~~~~~~~~~~ 356 (544)
T 3o83_A 288 VPSAVIMWLEKAAQY------KDQIQS---LKLLQVGGASFPESLARQVPEVL-NCKLQ-QVFGMAEGLVNYTRLDDSDE 356 (544)
T ss_dssp CHHHHHHHHHHHTTT------HHHHTT---CCEEEEESSCCCHHHHTHHHHHH-CSEEE-EEEECTTSCEEECCTTSCHH
T ss_pred chHHHHHHHhchhhc------cccCCc---ceEEEEcCCCCCHHHHHHHHHHh-CCcEE-eeeccccccceeecCCCchh
Confidence 666666665554321 112234 566666663 45667777888 89998 9999999854432111000
Q ss_pred --CCCCceeeecCCeEEEeecCCCCCCCCCCCCCCccccccccCCCCeEEEEEcc---cccccc--------------cc
Q 007558 353 --PSEVSYTIMPNMGYFEFLPHDPNSPPLSPESPPRLVDLAHVQVGKQYELVVTT---YAGLNR--------------YR 413 (598)
Q Consensus 353 --~~~~~~~l~~~~~ffEFip~~~~~~~~~~~~~~~~v~~~eve~G~~yelvvTt---~~GL~R--------------Yr 413 (598)
....+..+.++ .-++.++.+. .+|.+|+.|||+|+. ..|||+ |+
T Consensus 357 ~~~~~~G~p~~~~-~~~~i~d~~~----------------~~~~~g~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~g~~~ 419 (544)
T 3o83_A 357 QIFTTQGRPISSD-DEIKIVDEQY----------------REVPEGEIGMLATRGPYTFCGYYQSPEHNSQVFDEDNYYY 419 (544)
T ss_dssp HHHHCCCEESCTT-CEEEEECTTS----------------CBCCTTCCEEEEEECTTSCSCCTTCHHHHHHHBCTTCCEE
T ss_pred hccCCCceecCCC-cEEEEECCCC----------------CCCCCCCeeEEEEecCCcchhhcCChhhhhhhCCCCCCeE
Confidence 00112222222 2344444221 245789999999975 367774 99
Q ss_pred cCCEEEEeeeeCCCCeEEEEeecCceecccccccCHHHHHHHHHHH
Q 007558 414 VGDILLVTGYYNSAPQFRFVKRKNVLLSIDSDKTDEAELQKGIDNA 459 (598)
Q Consensus 414 ~GDvV~v~gf~~~~P~i~f~gR~~~~l~~~GEki~e~~v~~av~~a 459 (598)
|||+++++. ...+.|+||.+|+++++|++|++.+||++|.+.
T Consensus 420 TGDlg~~~~----dG~l~~~GR~dd~ik~~G~~v~p~eIE~~l~~~ 461 (544)
T 3o83_A 420 SGDLVQRTP----DGNLRVVGRIKDQINRGGEKIASEEIEKLILLH 461 (544)
T ss_dssp EEEEEEECT----TSCEEEEEEEC----------------------
T ss_pred cCCEEEEcC----CCCEEEEeecCCEEEeCCEEECHHHHHHHHHhC
Confidence 999999983 679999999999999999999999999999764
No 22
>3c5e_A Acyl-coenzyme A synthetase ACSM2A, mitochondrial; middle-chain acyl-COA synthetase, xenobiotic/medium-chain FA COA ligase; HET: ATP; 1.60A {Homo sapiens} PDB: 2vze_A 3b7w_A* 3day_A* 3eq6_A* 3eyn_A* 3gpc_A* 2wd9_A*
Probab=99.45 E-value=5.4e-12 Score=141.21 Aligned_cols=128 Identities=13% Similarity=0.216 Sum_probs=88.0
Q ss_pred eEEEEeCch---hhhHHHHHhhcCCCCeeccccccccccccccCCCC--CCCCCCceeeecCCeEEEeecCCCCCCCCCC
Q 007558 307 LDVIVTGAM---AQYIPTLDHYSGGLPLACTMYASSECFFGLNMKPM--CKPSEVSYTIMPNMGYFEFLPHDPNSPPLSP 381 (598)
Q Consensus 307 l~~~~~g~~---~~y~~~l~~~~~g~~v~~~~ygaSEg~~~i~~~~~--~~~~~~~~~l~~~~~ffEFip~~~~~~~~~~ 381 (598)
++.+++||. ...++++++.+ |++++ +.||+||+.+.+...+. ..+...+. ..++. -++.++.+.
T Consensus 324 lr~i~~gGe~l~~~~~~~~~~~~-g~~i~-~~YG~TE~~~~~~~~~~~~~~~~~vG~-p~~~~-~v~i~d~~g------- 392 (570)
T 3c5e_A 324 LQNCVTVGESLLPETLENWRAQT-GLDIR-ESYGQTETGLTCMVSKTMKIKPGYMGT-AASCY-DVQIIDDKG------- 392 (570)
T ss_dssp CCEEEEESSCCCHHHHHHHHHHH-SCCCE-EEEEETTTEEEEECCTTSCCCTTCCCE-ECTTC-CEEEECTTS-------
T ss_pred ceEEEEcCCcCCHHHHHHHHHHh-CCchh-hccchhhcccceecCcccccCCCcccc-cCCCc-eEEEECCCC-------
Confidence 556666653 45567777778 88998 99999997443221111 11111122 22322 244444221
Q ss_pred CCCCccccccccCCCCeEEEEEc-----c---cccccc-------------cccCCEEEEeeeeCCCCeEEEEeecCcee
Q 007558 382 ESPPRLVDLAHVQVGKQYELVVT-----T---YAGLNR-------------YRVGDILLVTGYYNSAPQFRFVKRKNVLL 440 (598)
Q Consensus 382 ~~~~~~v~~~eve~G~~yelvvT-----t---~~GL~R-------------Yr~GDvV~v~gf~~~~P~i~f~gR~~~~l 440 (598)
.+|.+|+.|||+|+ . ..|||. |+|||+++++. ...+.|+||.+|++
T Consensus 393 ---------~~~~~G~~GEl~v~~~~~~g~~v~~GY~~~~~~t~~~f~~~~~~TGDlg~~d~----dG~l~~~GR~dd~I 459 (570)
T 3c5e_A 393 ---------NVLPPGTEGDIGIRVKPIRPIGIFSGYVDNPDKTAANIRGDFWLLGDRGIKDE----DGYFQFMGRADDII 459 (570)
T ss_dssp ---------CBCCTTCCEEEEEECSSBCCTTCCCEETTCHHHHHHTEETTEEEEEEEEEECT----TSCEEEEEEGGGCE
T ss_pred ---------CCCCCCCCCeeEEeccCCCCchhhccccCChhHhhhhhcCCccccceeEEEcC----CceEEEEecCCCEE
Confidence 24578999999997 2 357764 99999999983 67899999999999
Q ss_pred cccccccCHHHHHHHHHH
Q 007558 441 SIDSDKTDEAELQKGIDN 458 (598)
Q Consensus 441 ~~~GEki~e~~v~~av~~ 458 (598)
+++|++|.+.+||++|.+
T Consensus 460 k~~G~~V~p~eIE~~l~~ 477 (570)
T 3c5e_A 460 NSSGYRIGPSEVENALME 477 (570)
T ss_dssp EETTEEECHHHHHHHHHT
T ss_pred EECCEEECHHHHHHHHHh
Confidence 999999999999999965
No 23
>3l8c_A D-alanine--poly(phosphoribitol) ligase subunit 1; structural genomics, DLTA, ATP-binding, cytoplasm, nucleotide-binding; 2.41A {Streptococcus pyogenes serotype M6} PDB: 3lgx_A*
Probab=99.45 E-value=3.8e-13 Score=148.41 Aligned_cols=129 Identities=15% Similarity=0.160 Sum_probs=84.1
Q ss_pred eEEEEeCch---hhhHHHHHhhcCCCCeeccccccccccccccCCCCC-------CCCCCceeeecCCeEEEeecCCCCC
Q 007558 307 LDVIVTGAM---AQYIPTLDHYSGGLPLACTMYASSECFFGLNMKPMC-------KPSEVSYTIMPNMGYFEFLPHDPNS 376 (598)
Q Consensus 307 l~~~~~g~~---~~y~~~l~~~~~g~~v~~~~ygaSEg~~~i~~~~~~-------~~~~~~~~l~~~~~ffEFip~~~~~ 376 (598)
++.+++||. ....+++.+.+++++++ +.||+||+.+.+.....+ .....+ ...++. -.+.++.+
T Consensus 266 lr~~~~gG~~l~~~~~~~~~~~~~~~~i~-~~YG~TE~~~~~~~~~~~~~~~~~~~~~~vG-~p~~~~-~~~i~d~~--- 339 (521)
T 3l8c_A 266 LTHFYFDGEELTVSTARKLFERFPSAKII-NAYGPTEATVALSAIEITREMVDNYTRLPIG-YPKPDS-PTYIIDED--- 339 (521)
T ss_dssp CCEEEECSSCCCHHHHHHHHHHCTTCEEE-EEECCGGGSSCSEEEEECHHHHHHCSSCEEE-EECTTS-CEEEECTT---
T ss_pred ceEEEEecccCCHHHHHHHHHHCCCceEE-eCcCccHHhhhhceeecccccccCCCccccc-cccCCC-EEEEECCC---
Confidence 566666663 45667777888899999 999999974322110000 000011 122222 23334422
Q ss_pred CCCCCCCCCccccccccCCCCeEEEEEcc---cccccc-----------------cccCCEEEEeeeeCCCCeEEEEeec
Q 007558 377 PPLSPESPPRLVDLAHVQVGKQYELVVTT---YAGLNR-----------------YRVGDILLVTGYYNSAPQFRFVKRK 436 (598)
Q Consensus 377 ~~~~~~~~~~~v~~~eve~G~~yelvvTt---~~GL~R-----------------Yr~GDvV~v~gf~~~~P~i~f~gR~ 436 (598)
..+|..|+.|||+|+. ..|||+ |+|||+++++. ...+.|+||.
T Consensus 340 -------------g~~~~~g~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~~~~~~~~TGDlg~~d~----dG~l~~~GR~ 402 (521)
T 3l8c_A 340 -------------GKELSSGEQGEIIVTGPAVSKGYLNNPEKTAEAFFTFKGQPAYHTGDIGSLTE----DNILLYGGRL 402 (521)
T ss_dssp -------------SCBCCTTCCEEEEEESTTSCSCBTTCHHHHHHHEEEETTEEEEEEEEEEEECS----SSCEEEEEEG
T ss_pred -------------cCCCCCCCceEEEecccccChhhcCCchHhhccCcCCCCceeeeCCCEEEEeC----CCeEEEeCcc
Confidence 1246789999999975 467774 99999999984 6789999999
Q ss_pred CceecccccccCHHHHHHHHHH
Q 007558 437 NVLLSIDSDKTDEAELQKGIDN 458 (598)
Q Consensus 437 ~~~l~~~GEki~e~~v~~av~~ 458 (598)
+|+|+++|++|++.+||++|.+
T Consensus 403 ~d~i~~~G~~v~p~eIE~~l~~ 424 (521)
T 3l8c_A 403 DFQIKYAGYRIELEDVSQQLNQ 424 (521)
T ss_dssp GGBCC-----CBHHHHHHHHHT
T ss_pred cceEeECCEEeCHHHHHHHHHc
Confidence 9999999999999999999965
No 24
>3g7s_A Long-chain-fatty-acid--COA ligase (FADD-1); protein structure initiative, PSI-II, NYSGXRC, 11193J, structural genomics; 2.15A {Archaeoglobus fulgidus dsm 4304}
Probab=99.45 E-value=2.1e-12 Score=143.68 Aligned_cols=153 Identities=17% Similarity=0.259 Sum_probs=86.2
Q ss_pred CHHHHHHHHHHhccCCCcccccccCCCCceeEEEEeCch---hhhHHHHHhh----cC--CCCeeccccccccccccccC
Q 007558 277 NPELAEFITKECSGEKWDGIITRIWPNTKYLDVIVTGAM---AQYIPTLDHY----SG--GLPLACTMYASSECFFGLNM 347 (598)
Q Consensus 277 ~p~~A~~L~~~~~~~~~~g~~~~lWP~l~~l~~~~~g~~---~~y~~~l~~~----~~--g~~v~~~~ygaSEg~~~i~~ 347 (598)
.|.....|.+...... ...-++. ++.+++||. ....+++++. ++ +++++ +.||+||+...+..
T Consensus 275 ~P~~~~~l~~~~~~~~----~~~~~~~---lr~~~~gg~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~YG~TE~~~~~~~ 346 (549)
T 3g7s_A 275 VPPALNVLVNTLESSN----KTYDWSY---LKVFATGAWPVAPALVEKLLKLAAEKCNNPRLRHN-QIWGMTEACPMVTT 346 (549)
T ss_dssp CHHHHHHHHHHHHHSC----CCCCCTT---CCEEEEESSCCCHHHHHHHHHHHHHHSSCTTCEEE-EEEECGGGSSEEEE
T ss_pred CCHHHHHHHhhhhhhc----ccCCccc---eeEEEeCCccCCHHHHHHHHHHHHhhcCCcccccc-ceEeccccchhhhc
Confidence 6666666655543321 1112345 677777773 3445666655 53 28888 99999997432211
Q ss_pred CCC---CCCCCCceeeecCCeEEEeecCCCCCCCCCCCCCCccccccccCCCCeEEEEEcc---ccccc-----------
Q 007558 348 KPM---CKPSEVSYTIMPNMGYFEFLPHDPNSPPLSPESPPRLVDLAHVQVGKQYELVVTT---YAGLN----------- 410 (598)
Q Consensus 348 ~~~---~~~~~~~~~l~~~~~ffEFip~~~~~~~~~~~~~~~~v~~~eve~G~~yelvvTt---~~GL~----------- 410 (598)
.+. ......+. ..++. -++.++.++. .+|.+|+.|||+|+. ..|||
T Consensus 347 ~~~~~~~~~~~~G~-p~~~~-~~~i~d~~~g---------------~~~~~g~~GEl~v~g~~v~~GY~~~~~~t~~~f~ 409 (549)
T 3g7s_A 347 NPPLRLDKSTTQGV-PMSDI-ELKVISLEDG---------------RELGVGESGEIVIRGPNIFKGYWKREKENQECWW 409 (549)
T ss_dssp CCGGGGGGTTSCCE-ECTTC-EEEEECSSSC---------------CEECTTCCEEEEEESTTSCSEETTCTTGGGTSEE
T ss_pred CCccccCcCCCccc-cCCCC-EEEEEeCCCC---------------cCCCCCCceEEEEECcchhhhhCCChhhhhhhhh
Confidence 111 01111122 22332 3445553321 245789999999975 35665
Q ss_pred -------ccccCCEEEEeeeeCCCCeEEEEeecCceecccccccCHHHHHHHHHH
Q 007558 411 -------RYRVGDILLVTGYYNSAPQFRFVKRKNVLLSIDSDKTDEAELQKGIDN 458 (598)
Q Consensus 411 -------RYr~GDvV~v~gf~~~~P~i~f~gR~~~~l~~~GEki~e~~v~~av~~ 458 (598)
.|+|||+++++. ...+.|+||.+|+++++|++|.+.|||++|.+
T Consensus 410 ~~~~g~~~~~TGDl~~~~~----dG~l~~~GR~dd~ik~~G~~v~p~eIE~~l~~ 460 (549)
T 3g7s_A 410 YDEKGRKFFRTGDVGFIDE----EGFLHFQDRVKEVIKYKGYTIAPFELEALLMK 460 (549)
T ss_dssp ECTTCCEEEEEEEEEEECT----TSCEEEEEEC------------CHHHHHHHTT
T ss_pred ccCCCCceEccCcEEEEcC----CceEEEeccccceEEECCEEECHHHHHHHHHh
Confidence 599999999973 67999999999999999999999999999965
No 25
>3nyq_A Malonyl-COA ligase; A/B topology ababa sandwich beta-barrel adenylate-forming EN fold; HET: MCA AMP; 1.43A {Streptomyces coelicolor} PDB: 3nyr_A*
Probab=99.44 E-value=3.7e-12 Score=140.35 Aligned_cols=131 Identities=15% Similarity=0.255 Sum_probs=86.2
Q ss_pred eEEEEeCch---hhhHHHHHhhcCCCCeeccccccccccccccCCCCC--CCCCCceeeecCCeEEEeecCCCCCCCCCC
Q 007558 307 LDVIVTGAM---AQYIPTLDHYSGGLPLACTMYASSECFFGLNMKPMC--KPSEVSYTIMPNMGYFEFLPHDPNSPPLSP 381 (598)
Q Consensus 307 l~~~~~g~~---~~y~~~l~~~~~g~~v~~~~ygaSEg~~~i~~~~~~--~~~~~~~~l~~~~~ffEFip~~~~~~~~~~ 381 (598)
++.+++||. ....+++++.+ +++++ +.||+||+.+.....+.. .+...+. ..++. -++.++.+..
T Consensus 274 lr~i~~gg~~l~~~~~~~~~~~~-~~~~~-~~YG~TE~~~~~~~~~~~~~~~~~vG~-p~~~~-~~~i~d~~g~------ 343 (505)
T 3nyq_A 274 ARLLVSGSAALPVHDHERIAAAT-GRRVI-ERYGMTETLMNTSVRADGEPRAGTVGV-PLPGV-ELRLVEEDGT------ 343 (505)
T ss_dssp CSEEEECSSCCCHHHHHHHHHHH-SCCCE-EEEEETTTEEEEECCTTSCCCTTCCCE-ECTTC-EEEEC-----------
T ss_pred ceEEEECCCCCCHHHHHHHHHhc-CCeee-cccchhhcccccccCCCCCCCCCCccc-CCCCC-EEEEECCCCC------
Confidence 566777773 35567777777 88999 999999975433221111 1111111 22332 3444443311
Q ss_pred CCCCccccccccCCCCeEEEEEcc---cccccc--------------cccCCEEEEeeeeCCCCeEEEEeec-Cceeccc
Q 007558 382 ESPPRLVDLAHVQVGKQYELVVTT---YAGLNR--------------YRVGDILLVTGYYNSAPQFRFVKRK-NVLLSID 443 (598)
Q Consensus 382 ~~~~~~v~~~eve~G~~yelvvTt---~~GL~R--------------Yr~GDvV~v~gf~~~~P~i~f~gR~-~~~l~~~ 443 (598)
.+. .+..|+.|||+|+. ..|||. |+|||+++++. ...+.|+||. +++++++
T Consensus 344 -----~~~--~~~~g~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~g~y~TGDl~~~~~----dG~l~~~GR~~d~~ik~~ 412 (505)
T 3nyq_A 344 -----PIA--ALDGESVGEIQVRGPNLFTEYLNRPDATAAAFTEDGFFRTGDMAVRDP----DGYVRIVGRKATDLIKSG 412 (505)
T ss_dssp -----CCC--CCCSCCCEEEEEESTTSCCEETTCHHHHHHTBCTTSCEEEEEEEEECT----TSCEEEEEESSCCCEEET
T ss_pred -----Ccc--cCCCCceEEEEEecCchhhhhCCChhHhhhhhcCCCCCccCCeEEECC----CccEEEeCCccCceEEeC
Confidence 111 12348899999974 467764 99999999983 6789999997 5899999
Q ss_pred ccccCHHHHHHHHHH
Q 007558 444 SDKTDEAELQKGIDN 458 (598)
Q Consensus 444 GEki~e~~v~~av~~ 458 (598)
|++|.+.+||++|.+
T Consensus 413 G~~v~~~eIE~~l~~ 427 (505)
T 3nyq_A 413 GYKIGAGEIENALLE 427 (505)
T ss_dssp TEEECHHHHHHHHTT
T ss_pred CEEECHHHHHHHHHH
Confidence 999999999999965
No 26
>3ite_A SIDN siderophore synthetase; ligase, non-ribosomal peptide synthesis, NRPS, sidna3, fungal, endophyte; HET: MSE; 2.00A {Neotyphodium lolii}
Probab=99.43 E-value=1.4e-12 Score=145.43 Aligned_cols=131 Identities=20% Similarity=0.280 Sum_probs=66.4
Q ss_pred eEEEEeCch---hhhHHHHHhhcCCCCeeccccccccccccccCCCCCCCCCCc--eeeecCCeEEEeecCCCCCCCCCC
Q 007558 307 LDVIVTGAM---AQYIPTLDHYSGGLPLACTMYASSECFFGLNMKPMCKPSEVS--YTIMPNMGYFEFLPHDPNSPPLSP 381 (598)
Q Consensus 307 l~~~~~g~~---~~y~~~l~~~~~g~~v~~~~ygaSEg~~~i~~~~~~~~~~~~--~~l~~~~~ffEFip~~~~~~~~~~ 381 (598)
++.+++||. ....+++++.+ +++++ +.||+||+.+........+..... ....++. -...++.+..
T Consensus 296 lr~~~~gG~~l~~~~~~~~~~~~-~~~~~-~~YG~TE~~~~~~~~~~~~~~~~~~~G~p~~~~-~~~i~d~~~~------ 366 (562)
T 3ite_A 296 LVYLGVGGEKMTPRTQQIWSSSD-RVALV-NVYGPTEVTIGCSAGRILPDSDTRCIGHPLGDS-VAHVLAPGSN------ 366 (562)
T ss_dssp CCEEEEESSCCCHHHHHHHTTCS-SCEEE-EEECCGGGCSCSEEEECCTTSCTTEEEEECTTC-EEEEECTTSS------
T ss_pred eEEEEEecCCCCHHHHHHHhhCC-CcEEE-EeeccchheeeeeeeeecCCCCCccccccCCCC-eEEEEeCCCC------
Confidence 566666763 34456666655 78898 999999974322111111110111 1122222 3344443321
Q ss_pred CCCCccccccccCCCCeEEEEEcc---cccccc---------------cccCCEEEEeeeeCCCCeEEEEeecCceeccc
Q 007558 382 ESPPRLVDLAHVQVGKQYELVVTT---YAGLNR---------------YRVGDILLVTGYYNSAPQFRFVKRKNVLLSID 443 (598)
Q Consensus 382 ~~~~~~v~~~eve~G~~yelvvTt---~~GL~R---------------Yr~GDvV~v~gf~~~~P~i~f~gR~~~~l~~~ 443 (598)
.+|.+|+.|||+|.. ..|||+ |+|||+++++. ...+.|+||.+|+|+++
T Consensus 367 ---------~~~~~g~~GEl~v~g~~v~~GY~~~p~~t~~~~~~g~~w~~TGDlg~~d~----dG~l~~~GR~dd~Ik~~ 433 (562)
T 3ite_A 367 ---------EHVKKGMAGELVIEGSLVANGYLNRPDAKGFCDINGRKMYRTGDIVRMDA----DSSILFLGRKDEQVKVR 433 (562)
T ss_dssp ---------CBCCTTSCEEEEEESTTSCCEESSCTTCCSEEEETTEEEEEEEEEEEECT----TSCEEEEEEC-------
T ss_pred ---------CCCCCCCceEEEEeccccchhhCCCccccccccCCCCEEEecCCEEEEcC----CCeEEEEccccCEEeEC
Confidence 245789999999964 467774 99999999983 67999999999999999
Q ss_pred ccccCHHHHHHHHHHH
Q 007558 444 SDKTDEAELQKGIDNA 459 (598)
Q Consensus 444 GEki~e~~v~~av~~a 459 (598)
|++|++.|||++|.+.
T Consensus 434 G~~v~p~eIE~~l~~~ 449 (562)
T 3ite_A 434 GQRLELGEVSEVIRSL 449 (562)
T ss_dssp ----------------
T ss_pred cEEECHHHHHHHHHhc
Confidence 9999999999999764
No 27
>3rg2_A Enterobactin synthase component E (ENTE), 2,3-DIH dihydroxybenzoate synthetase, isochroismatase...; adenylate-forming enzymes, ANL superfamily; HET: SVS PNS; 3.10A {Escherichia coli}
Probab=99.42 E-value=1.4e-12 Score=147.28 Aligned_cols=152 Identities=12% Similarity=0.150 Sum_probs=99.3
Q ss_pred CHHHHHHHHHHhccCCCcccccccCCCCceeEEEEeCch---hhhHHHHHhhcCCCCeeccccccccccccccCCCCCCC
Q 007558 277 NPELAEFITKECSGEKWDGIITRIWPNTKYLDVIVTGAM---AQYIPTLDHYSGGLPLACTMYASSECFFGLNMKPMCKP 353 (598)
Q Consensus 277 ~p~~A~~L~~~~~~~~~~g~~~~lWP~l~~l~~~~~g~~---~~y~~~l~~~~~g~~v~~~~ygaSEg~~~i~~~~~~~~ 353 (598)
.|.....|.+..... ....-.++ ++.+++||. ....+++.+.+ +++++ +.||+||+.+..........
T Consensus 281 ~P~~~~~l~~~~~~~----~~~~~l~~---lr~i~~gGe~l~~~~~~~~~~~~-~~~~~-~~YG~tE~~~~~~~~~~~~~ 351 (617)
T 3rg2_A 281 VPPAVSLWLQALIEG----ESRAQLAS---LKLLQVGGARLSATLAARIPAEI-GCQLQ-QVFGMAEGLVNYTRLDDSAE 351 (617)
T ss_dssp CHHHHHHHHHHHHTT----CCTTTTTT---CCEEEEESSCCCHHHHHHHHHHT-CSEEE-EEEEETTEEEEECCTTSCHH
T ss_pred chHHHHHHHHhhhcc----cccccCCC---ccEEEEcCCcCCHHHHHHHHHHh-CCcEE-EEeccCcceeecccCCCccc
Confidence 566666665544332 11122345 567776763 45667777777 88998 99999998554321110000
Q ss_pred ---CCCceeeecCCeEEEeecCCCCCCCCCCCCCCccccccccCCCCeEEEEEcc---cccccc--------------cc
Q 007558 354 ---SEVSYTIMPNMGYFEFLPHDPNSPPLSPESPPRLVDLAHVQVGKQYELVVTT---YAGLNR--------------YR 413 (598)
Q Consensus 354 ---~~~~~~l~~~~~ffEFip~~~~~~~~~~~~~~~~v~~~eve~G~~yelvvTt---~~GL~R--------------Yr 413 (598)
...+..+.++. -...++.+ ...|..|+.|||+|+. ..|||. ||
T Consensus 352 ~~~~~~G~p~~~~~-~~~i~d~~----------------~~~~p~G~~GEl~i~G~~v~~GY~~~p~~t~~~f~~~~~yr 414 (617)
T 3rg2_A 352 KIIHTQGYPMCPDD-EVWVADAE----------------GNPLPQGEVGRLMTRGPYTFRGYYKSPQHNASAFDANGFYC 414 (617)
T ss_dssp HHHHCCCEESCTTC-EEEEECTT----------------SCBCCTTCCEEEEEECSSSCSCCTTCHHHHHHHBCTTSCEE
T ss_pred ccccCCCccCCCCc-eEEEECCC----------------CCCCCCCCceEEEecCccccchhcCChhhhhhccCCCCcee
Confidence 01122222222 23333322 1245789999999974 467775 99
Q ss_pred cCCEEEEeeeeCCCCeEEEEeecCceecccccccCHHHHHHHHHH
Q 007558 414 VGDILLVTGYYNSAPQFRFVKRKNVLLSIDSDKTDEAELQKGIDN 458 (598)
Q Consensus 414 ~GDvV~v~gf~~~~P~i~f~gR~~~~l~~~GEki~e~~v~~av~~ 458 (598)
|||+++++. ...+.|+||.+|+++++|++|.+.+||.+|.+
T Consensus 415 TGDl~~~~~----dG~l~~~GR~dd~iki~G~ri~~~eIE~~l~~ 455 (617)
T 3rg2_A 415 SGDLISIDP----EGYITVQGREKDQINRGGEKIAAEEIENLLLR 455 (617)
T ss_dssp EEEEEEECT----TSCEEEEEECSSEEEETTEEEEHHHHHHHHTT
T ss_pred cCceEEEcC----CceEEEEeecCCEEEECCEEeCHHHHHHHHHh
Confidence 999999973 67899999999999999999999999999965
No 28
>3gqw_A Fatty acid AMP ligase; FAAL, E. coli, ATP-dependent binding enzyme family,, structural genomics, PSI-2, protein structure initiative; HET: ZZ9; 3.00A {Escherichia coli O6} PDB: 3pbk_A*
Probab=99.41 E-value=7.4e-12 Score=139.36 Aligned_cols=63 Identities=11% Similarity=0.079 Sum_probs=55.5
Q ss_pred ccCCCCeEEEEEcc---cccccc-------------cccCCEEEEeeeeCCCCeEEEEeecCceecccccccCHHHHHHH
Q 007558 392 HVQVGKQYELVVTT---YAGLNR-------------YRVGDILLVTGYYNSAPQFRFVKRKNVLLSIDSDKTDEAELQKG 455 (598)
Q Consensus 392 eve~G~~yelvvTt---~~GL~R-------------Yr~GDvV~v~gf~~~~P~i~f~gR~~~~l~~~GEki~e~~v~~a 455 (598)
+|.+|+.|||+|+. ..|||+ |+|||++++. ...+.|+||.+|+|+++|++|++.+||++
T Consensus 405 ~~~~g~~GEl~v~g~~~~~gY~~~~~~~~~~~~~g~~~TGDl~~~~-----dG~l~~~GR~dd~ik~~G~~v~p~eIE~~ 479 (576)
T 3gqw_A 405 PVAERVVGHICISGPSLMSGYFGDQVSQDEIAATGWLDTGDLGYLL-----DGYLYVTGRIKDLIIIRGRNIWPQDIEYI 479 (576)
T ss_dssp BCCTTBCEEEEEESTTSCCCBTTCHHHHHHHHHHSCEEEEEEEEEE-----TTEEEEEEETTTCEEETTEEECHHHHHHH
T ss_pred CCCCCCeEEEEEeCccccccccCCccccccccCCCeeeccceEEEE-----CCEEEEEecCcceEEECCEEECHHHHHHH
Confidence 46789999999975 478887 9999999883 57899999999999999999999999999
Q ss_pred HHHH
Q 007558 456 IDNA 459 (598)
Q Consensus 456 v~~a 459 (598)
+.+.
T Consensus 480 l~~~ 483 (576)
T 3gqw_A 480 AEQE 483 (576)
T ss_dssp HTTS
T ss_pred HHhC
Confidence 9763
No 29
>3r44_A Fatty acyl COA synthetase FADD13 (fatty-acyl-COA synthetase); ligase; HET: HIS; 1.80A {Mycobacterium tuberculosis} PDB: 3t5c_A 3t5b_A
Probab=99.39 E-value=4.9e-12 Score=139.68 Aligned_cols=126 Identities=16% Similarity=0.152 Sum_probs=83.9
Q ss_pred eEEEEeCch---hhhHHHHHhhcCCCCeeccccccccccccc--cC--CCCCCCCCCceeeecCCeEEEeecCCCCCCCC
Q 007558 307 LDVIVTGAM---AQYIPTLDHYSGGLPLACTMYASSECFFGL--NM--KPMCKPSEVSYTIMPNMGYFEFLPHDPNSPPL 379 (598)
Q Consensus 307 l~~~~~g~~---~~y~~~l~~~~~g~~v~~~~ygaSEg~~~i--~~--~~~~~~~~~~~~l~~~~~ffEFip~~~~~~~~ 379 (598)
++.+++||. ....+.+++. +++++ +.||+||+.... .. +........+. ..++ .-.+.++.+ +
T Consensus 286 lr~i~~gGe~l~~~~~~~~~~~--~~~~~-~~YG~TE~~~~~~~~~~~~~~~~~~~~G~-~~~~-~~~~i~d~~--~--- 355 (517)
T 3r44_A 286 FRYFITGGAPMPEALIKIYAAK--NIEVV-QGYALTESCGGGTLLLSEDALRKAGSAGR-ATMF-TDVAVRGDD--G--- 355 (517)
T ss_dssp CCEEEECSSCCCHHHHHHHHHT--TCEEE-EEEECGGGTTCEEEECGGGTTTTTTCCBE-ECTT-EEEEEECTT--S---
T ss_pred ccEEEECCCCCCHHHHHHHHhc--CCcEE-EeecccccccceeecCCccccccCCCCCc-CCCC-eEEEEECCC--C---
Confidence 677777774 3444555554 78898 999999964321 11 10111111121 1222 123333322 1
Q ss_pred CCCCCCccccccccCCCCeEEEEEcc---cccccc-------------cccCCEEEEeeeeCCCCeEEEEeecCceeccc
Q 007558 380 SPESPPRLVDLAHVQVGKQYELVVTT---YAGLNR-------------YRVGDILLVTGYYNSAPQFRFVKRKNVLLSID 443 (598)
Q Consensus 380 ~~~~~~~~v~~~eve~G~~yelvvTt---~~GL~R-------------Yr~GDvV~v~gf~~~~P~i~f~gR~~~~l~~~ 443 (598)
..+..| .|||+|+. ..|||. |+|||+++++. ...+.|+||.+|+++++
T Consensus 356 -----------~~~~~g-~GEl~v~g~~v~~GY~~~p~~t~~~f~~g~~~TGDl~~~~~----dG~l~~~GR~dd~ik~~ 419 (517)
T 3r44_A 356 -----------VIREHG-EGEVVIKSDILLKEYWNRPEATRDAFDNGWFRTGDIGEIDD----EGYLYIKDRLKDMIISG 419 (517)
T ss_dssp -----------CEESSE-EEEEEEEETTSCSEETTCHHHHHHTEETTEEEEEEEEEECT----TSCEEEEECGGGCEEET
T ss_pred -----------CCCCCC-CeEEEEeCcchhhhhCCChhhhHhhhcCCCEecceeEEEcC----CeeEEEecCCcCEEEEC
Confidence 123457 89999975 478876 99999999984 67899999999999999
Q ss_pred ccccCHHHHHHHHHH
Q 007558 444 SDKTDEAELQKGIDN 458 (598)
Q Consensus 444 GEki~e~~v~~av~~ 458 (598)
|++|.+.+||++|.+
T Consensus 420 G~~v~p~eIE~~l~~ 434 (517)
T 3r44_A 420 GENVYPAEIESVIIG 434 (517)
T ss_dssp TEEECHHHHHHHHTT
T ss_pred CEEECHHHHHHHHHh
Confidence 999999999999965
No 30
>4gr5_A Non-ribosomal peptide synthetase; MBTH-like domain, adenylation domain, ligase, rossmann fold, binding; HET: APC TLA; 1.92A {Streptomyces lydicus} PDB: 4gr4_A
Probab=99.39 E-value=1.9e-12 Score=144.73 Aligned_cols=148 Identities=17% Similarity=0.191 Sum_probs=75.2
Q ss_pred CHHHHHHHHHHhccCCCcccccccCCCCceeEEEEeCch---hhhHHHHHhhcCCCCeecccccccccccccc---CCCC
Q 007558 277 NPELAEFITKECSGEKWDGIITRIWPNTKYLDVIVTGAM---AQYIPTLDHYSGGLPLACTMYASSECFFGLN---MKPM 350 (598)
Q Consensus 277 ~p~~A~~L~~~~~~~~~~g~~~~lWP~l~~l~~~~~g~~---~~y~~~l~~~~~g~~v~~~~ygaSEg~~~i~---~~~~ 350 (598)
.|..+..|.+...+ -+++ ++.+++||. .....++.+.+++++++ +.||+||+..... ....
T Consensus 310 ~P~~~~~l~~~~~~---------~~~~---lr~~~~gG~~l~~~~~~~~~~~~~~~~l~-~~YG~TE~~~~~~~~~~~~~ 376 (570)
T 4gr5_A 310 SASLFNFLVDEVPE---------AFEG---VRYAITGGEPASVPHVAKARRDHPALRLG-NGYGPAESMGFTTHHAVVAG 376 (570)
T ss_dssp EHHHHHHHHHHCGG---------GGTT---CSEEEEESSCCCHHHHHHHHHHCTTCEEE-EEECCGGGCSCSEEEECCGG
T ss_pred cHHHHHHHHhhchh---------hCCC---ceEEEEecccCCHHHHHHHHHhCCCcEEE-Eeechhhheeeeeeeeeccc
Confidence 56666666554321 1345 566666763 35567777778789999 9999999632111 0000
Q ss_pred CCCC---CCceeeecCCeEEEeecCCCCCCCCCCCCCCccccccccCCCCeEEEEEcc---cccccc-------------
Q 007558 351 CKPS---EVSYTIMPNMGYFEFLPHDPNSPPLSPESPPRLVDLAHVQVGKQYELVVTT---YAGLNR------------- 411 (598)
Q Consensus 351 ~~~~---~~~~~l~~~~~ffEFip~~~~~~~~~~~~~~~~v~~~eve~G~~yelvvTt---~~GL~R------------- 411 (598)
.... ..+. ..++. -+..++.+ ..++..|+.|||+|+. ..|||+
T Consensus 377 ~~~~~~~~iG~-p~~~~-~v~i~d~~----------------~~~~~~G~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~~ 438 (570)
T 4gr5_A 377 DLSGTALPIGV-PLAGK-RAYVLDDD----------------LKPAANGALGELYVAGAGLAHGYVSRPALTAERFVADP 438 (570)
T ss_dssp GTTSSSCCCBE-ECTTE-EEEEECTT----------------SCBCCTTCEEEEEEEETTCCCEETTCHHHHHHHEEECT
T ss_pred ccCCCccccce-eeCCC-EEEEECCC----------------CCCCCCCCcEEEEEeecccchhcCCCchhhhcccccCC
Confidence 0000 0122 22222 23344422 1245789999999964 467764
Q ss_pred ---------cccCCEEEEeeeeCCCCeEEEEeecCceecccccccCHHHHHHHHHHH
Q 007558 412 ---------YRVGDILLVTGYYNSAPQFRFVKRKNVLLSIDSDKTDEAELQKGIDNA 459 (598)
Q Consensus 412 ---------Yr~GDvV~v~gf~~~~P~i~f~gR~~~~l~~~GEki~e~~v~~av~~a 459 (598)
|+|||+++++. ...+.|+||.+|+|+++|++|++.+||++|.+.
T Consensus 439 ~~~~~~~~w~~TGDlg~~d~----dG~l~~~GR~~d~Ik~~G~~v~p~eIE~~l~~~ 491 (570)
T 4gr5_A 439 FAGPGGERMYRTGDLARRRA----DGVLEYVGRADDQVKIRGFRVEPGEVEARLVGH 491 (570)
T ss_dssp TCCSSCCEEEEEEEEEEECT----TSCEEEEEC------------------------
T ss_pred CCCCCCCEEEeCCCeEEECC----CCeEEEEcccCCEEEECcEEeCHHHHHHHHhcC
Confidence 99999999983 678999999999999999999999999999763
No 31
>1ry2_A Acetyl-coenzyme A synthetase 1, acyl-activating enzyme 1; AMP forming, related to firefly luciferase, ligase; HET: AMP; 2.30A {Saccharomyces cerevisiae} SCOP: e.23.1.1
Probab=99.38 E-value=1.8e-11 Score=139.55 Aligned_cols=228 Identities=15% Similarity=0.134 Sum_probs=120.3
Q ss_pred ceeEEEEeCch---hhhHHHHHhhcC--CCCeeccccccccccc--cccCC-CC--CCCCCCceeeecCCeEEEeecCCC
Q 007558 305 KYLDVIVTGAM---AQYIPTLDHYSG--GLPLACTMYASSECFF--GLNMK-PM--CKPSEVSYTIMPNMGYFEFLPHDP 374 (598)
Q Consensus 305 ~~l~~~~~g~~---~~y~~~l~~~~~--g~~v~~~~ygaSEg~~--~i~~~-~~--~~~~~~~~~l~~~~~ffEFip~~~ 374 (598)
..++++++||. ....+.+.+.+| +++++ +.||.||... ..+.. .. ..+...+. ..++. -.+.++.++
T Consensus 384 ~sLr~i~~gGe~l~~~~~~~~~~~~g~~~~~i~-~~YG~TE~~~~~~~~~~~~~~~~~~gs~G~-p~~g~-~v~i~d~~~ 460 (663)
T 1ry2_A 384 KSLRCLGSVGEPIAAEVWEWYSEKIGKNEIPIV-DTYWQTESGSHLVTPLAGGVTPMKPGSASF-PFFGI-DAVVLDPNT 460 (663)
T ss_dssp TTCCEEEECSSCCCHHHHHHHHHTTSCSSSCEE-ECBCCTTTCSCSEECCTTTCCCCCTTCCCE-ECTTC-CEEEECSSS
T ss_pred CceEEEEEEcCCCCHHHHHHHHHHhCCCCceEE-EeECCccccCeeeccCCCCCcccCCCcccc-CcCCC-eEEEEcCCC
Confidence 33778887773 345577777774 38999 9999999632 22111 00 01111122 12222 233444311
Q ss_pred CCCCCCCCCCCccccccccCC-CCeEEEEEccc-----ccccc----------------cccCCEEEEeeeeCCCCeEEE
Q 007558 375 NSPPLSPESPPRLVDLAHVQV-GKQYELVVTTY-----AGLNR----------------YRVGDILLVTGYYNSAPQFRF 432 (598)
Q Consensus 375 ~~~~~~~~~~~~~v~~~eve~-G~~yelvvTt~-----~GL~R----------------Yr~GDvV~v~gf~~~~P~i~f 432 (598)
. .+|.. |+.|||+|+.. .|||+ |+|||+++++. ...+.|
T Consensus 461 g---------------~~v~~~g~~Gel~i~g~~p~~~~gy~~~~~~~~~~~~~~~~g~y~TGDlg~~d~----dG~l~i 521 (663)
T 1ry2_A 461 G---------------EELNTSHAEGVLAVKAAWPSFARTIWKNHDRYLDTYLNPYPGYYFTGDGAAKDK----DGYIWI 521 (663)
T ss_dssp T---------------TCEECSSCEEEEEESSCCTTSCCEETTCHHHHHHHHTSSSTTSEEEEEEEEECT----TCCEEE
T ss_pred C---------------CcCCCCCcceEEEEecCCCchhcccccChHHHHHhhhcCCCCEEEcCCEEEEcC----CCCEEE
Confidence 1 13445 88999999762 45542 99999999983 578999
Q ss_pred EeecCceecccccccCHHHHHHHHHHHHHHhhhcCCeEEeEEEeecCC-CCCceEEEEEEEeecccCCC---C-Ch---H
Q 007558 433 VKRKNVLLSIDSDKTDEAELQKGIDNASLLLKEFNASVIEYTSYADTT-TIPGHYVIFWELLVKDAANS---P-SD---E 504 (598)
Q Consensus 433 ~gR~~~~l~~~GEki~e~~v~~av~~a~~~l~~~g~~l~~f~~~~d~~-~~p~~Y~l~~E~e~~~~~~~---~-~~---~ 504 (598)
+||.+|+|++.|++|...|||++|.+. . .|.+..|+.-.. .....-+.|+.+.. +. . . +. +
T Consensus 522 ~GR~dd~Ik~~G~rI~~~eIE~~l~~~------p--~V~ea~Vvg~~~~~~g~~~~a~Vv~~~-~~--~~~~~~~~~~~~ 590 (663)
T 1ry2_A 522 LGRVDDVVNVSGHRLSTAEIEAAIIED------P--IVAECAVVGFNDDLTGQAVAAFVVLKN-KS--SWSTATDDELQD 590 (663)
T ss_dssp CSCTTSCBCSSSCCBCHHHHHHHHHSS------T--TEEEEEEECCCCCTTSCCCEEEEEEC---------------CCS
T ss_pred EeecCCEEEECCEEcCHHHHHHHHHhC------C--CcceEEEEEEecCCCCeEEEEEEEEcC-CC--ccccccchhHHH
Confidence 999999999999999999999999642 1 245665543211 11113345565542 11 1 1 11 1
Q ss_pred HHHHHHHHHHHHhChhhHhccccCCccCCeEEEEeC------CChHHHHHHHHHhcCCCCC--CCCCCcccCCHhHHHHH
Q 007558 505 VLNQCCLVVEESLNSVYRQGRVADNSIGPLEIRVVK------NGTFEELMDYAISRGASIN--QYKAPRCVSFTPILELL 576 (598)
Q Consensus 505 ~l~~~~~~ld~~Ln~~Y~~~R~~~g~l~p~~v~~v~------~gtF~~~~~~~~~~G~~~~--Q~K~Pr~~~~~~~~~~L 576 (598)
..+++.+.+.+.| +.| ..|-+|.+|+ .|...+ ..+.+=.... +.+.+-.+.|++.++.+
T Consensus 591 l~~~l~~~l~~~L-~~~---------~~P~~i~~v~~lP~T~sGKi~R---~~L~~~~~~~~~~~~~~~~l~~p~~~~~~ 657 (663)
T 1ry2_A 591 IKKHLVFTVRKDI-GPF---------AAPKLIILVDDLPKTRSGKIMR---RILRKILAGESDQLGDVSTLSNPGIVRHL 657 (663)
T ss_dssp HHHHHHHHHHHHT-CTT---------TSCSEEEECSCCCBCTTSCBCH---HHHHHSCC-------------CCHHHHHH
T ss_pred HHHHHHHHHHHhC-CCC---------cCCeEEEEcCCCCCCCccCchH---HHHHHHHcCCCCCCCCcccccCHHHHHHH
Confidence 2333333444444 111 2344455543 243332 2222211122 67778888999999988
Q ss_pred hc
Q 007558 577 NG 578 (598)
Q Consensus 577 ~~ 578 (598)
.+
T Consensus 658 ~~ 659 (663)
T 1ry2_A 658 ID 659 (663)
T ss_dssp HH
T ss_pred HH
Confidence 65
No 32
>3tsy_A Fusion protein 4-coumarate--COA ligase 1, resvera synthase; transferase; 3.10A {Arabidospis thaliana}
Probab=99.38 E-value=2.5e-12 Score=152.73 Aligned_cols=152 Identities=18% Similarity=0.221 Sum_probs=82.3
Q ss_pred CHHHHHHHHHHhccCCCcccccccCCCCceeEEEEeCch---hhhHHHHHhhcCCCCeecccccccccccc--ccC----
Q 007558 277 NPELAEFITKECSGEKWDGIITRIWPNTKYLDVIVTGAM---AQYIPTLDHYSGGLPLACTMYASSECFFG--LNM---- 347 (598)
Q Consensus 277 ~p~~A~~L~~~~~~~~~~g~~~~lWP~l~~l~~~~~g~~---~~y~~~l~~~~~g~~v~~~~ygaSEg~~~--i~~---- 347 (598)
.|..+..|.+..... ..-.++ ++.+++||. ....+++++.+++++++ +.||+||+... .+.
T Consensus 325 ~P~~~~~l~~~~~~~------~~~l~~---lr~~~~gg~~l~~~~~~~~~~~~~~~~l~-~~YG~TE~~~~~~~~~~~~~ 394 (979)
T 3tsy_A 325 VPPIVLAIAKSSETE------KYDLSS---IRVVKSGAAPLGKELEDAVNAKFPNAKLG-QGYGMTEAGPVLAMSLGFAK 394 (979)
T ss_dssp CHHHHHHHHHCGGGG------TSCCTT---CCEEEESSCCCCSSHHHHHHHHCTTCEEE-ECEECGGGCSEEEECGGGSS
T ss_pred HHHHHHHHHhCcccc------CCCccc---eEEEEEcCCCCCHHHHHHHHHHCCCCeEE-eeechhhhhHHHHhCCCCCC
Confidence 566666665543221 111234 677777873 45678888888899999 99999997432 211
Q ss_pred CCC-CCCCCCceeeecCCeEEEeecCCCCCCCCCCCCCCccccccccCCCCeEEEEEcc---cccccc------------
Q 007558 348 KPM-CKPSEVSYTIMPNMGYFEFLPHDPNSPPLSPESPPRLVDLAHVQVGKQYELVVTT---YAGLNR------------ 411 (598)
Q Consensus 348 ~~~-~~~~~~~~~l~~~~~ffEFip~~~~~~~~~~~~~~~~v~~~eve~G~~yelvvTt---~~GL~R------------ 411 (598)
.+. ......+ ...++. -++.+++++. ..|.+|+.|||+|+. ..|||+
T Consensus 395 ~~~~~~~~~~G-~p~~~~-~~~i~d~~~~---------------~~~~~g~~GEl~i~g~~v~~GY~~~p~~t~~~f~~~ 457 (979)
T 3tsy_A 395 EPFPVKSGACG-TVVRNA-EMKIVDPDTG---------------DSLSRNQPGEICIRGHQIMKGYLNNPAATAETIDKD 457 (979)
T ss_dssp SCCCCCTTCCC-EECSSC-EEEEECTTSC---------------CBCCTTCCEEEEEESTTSCSEETTCHHHHHHHBCTT
T ss_pred CccccCCCCcC-cccCCc-EEEEEeCCCC---------------CCCCCCCccEEEEECCCccccccCChhhhhhhccCC
Confidence 000 0011111 122332 3445553322 245679999999974 467775
Q ss_pred --cccCCEEEEeeeeCCCCeEEEEeecCceecccccccCHHHHHHHHHHH
Q 007558 412 --YRVGDILLVTGYYNSAPQFRFVKRKNVLLSIDSDKTDEAELQKGIDNA 459 (598)
Q Consensus 412 --Yr~GDvV~v~gf~~~~P~i~f~gR~~~~l~~~GEki~e~~v~~av~~a 459 (598)
|+|||+++++. ...+.|+||.+|+++++|++|.+.+||.+|.+.
T Consensus 458 g~~~TGDl~~~~~----dG~l~~~GR~dd~ik~~G~~v~~~eIE~~l~~~ 503 (979)
T 3tsy_A 458 GWLHTGDIGLIDD----DDELFIVDRLKELIKYKGFQVAPAELEALLIGH 503 (979)
T ss_dssp SCEEEEEEEEECT----TSCEEEEEESCC---------------------
T ss_pred CcEEcCCEEEEcC----CceEEEecCCCCEEEECCEEECHHHHHHHHHhC
Confidence 99999999983 678999999999999999999999999999763
No 33
>3ipl_A 2-succinylbenzoate--COA ligase; structural genomics, acyl-protein synthetase, PSI-2, protein structure initiative; 2.30A {Staphylococcus aureus subsp}
Probab=99.36 E-value=4.5e-11 Score=131.11 Aligned_cols=140 Identities=18% Similarity=0.225 Sum_probs=90.3
Q ss_pred CHHHHHHHHHHhccCCCcccccccCCCCceeEEEEeCch---hhhHHHHHhhcCCCCeeccccccccccc-cccCCCC--
Q 007558 277 NPELAEFITKECSGEKWDGIITRIWPNTKYLDVIVTGAM---AQYIPTLDHYSGGLPLACTMYASSECFF-GLNMKPM-- 350 (598)
Q Consensus 277 ~p~~A~~L~~~~~~~~~~g~~~~lWP~l~~l~~~~~g~~---~~y~~~l~~~~~g~~v~~~~ygaSEg~~-~i~~~~~-- 350 (598)
.|..+..|.+..... .. + ++.+++||. ....+++++ + +++++ +.||+||... .+...+.
T Consensus 258 ~P~~~~~l~~~~~~~-------~~--~---lr~i~~gG~~l~~~~~~~~~~-~-~~~~~-~~YG~TE~~~~~~~~~~~~~ 322 (501)
T 3ipl_A 258 VPQTLNWLMQQGLHE-------PY--N---LQKILLGGAKLSATMIETALQ-Y-NLPIY-NSFGMTETCSQFLTATPEML 322 (501)
T ss_dssp CHHHHHHHHHHTCCS-------CT--T---CCEEEECSSCCCHHHHHHHHH-T-TCCEE-EEEEEGGGTEEEEEECHHHH
T ss_pred hHHHHHHHHhcCCCC-------cC--c---ccEEEEeCCCCCHHHHHHHHH-h-CCCEe-ccccccccccceeecCcccc
Confidence 677777776654321 11 4 566676763 344555655 4 79999 9999999632 2211110
Q ss_pred -CCCCCCceeeecCCeEEEeecCCCCCCCCCCCCCCccccccccCCCCeEEEEEcc---cccccc------------ccc
Q 007558 351 -CKPSEVSYTIMPNMGYFEFLPHDPNSPPLSPESPPRLVDLAHVQVGKQYELVVTT---YAGLNR------------YRV 414 (598)
Q Consensus 351 -~~~~~~~~~l~~~~~ffEFip~~~~~~~~~~~~~~~~v~~~eve~G~~yelvvTt---~~GL~R------------Yr~ 414 (598)
..+...+. ..++. -.+.++ . ..|+.|||+|+. ..|||. |+|
T Consensus 323 ~~~~~~~G~-p~~~~-~~~i~d------------------~---~~~~~GEl~v~g~~~~~gY~~~~~~t~~~~~g~~~T 379 (501)
T 3ipl_A 323 HARPDTVGM-PSANV-DVKIKN------------------P---NKEGHGELMIKGANVMNGYLYPTDLTGTFENGYFNT 379 (501)
T ss_dssp HHCTTCCBE-ECTTC-EEEEES------------------C---CSSCCEEEEEESTTSCSCCSBSTTCCCSEETTEEEE
T ss_pred ccCCCCCCC-CCCCc-EEEEec------------------C---CCCCccEEEEeccchhhhhCcChhhcchhcCCceec
Confidence 00111111 11111 122222 1 257789999964 467776 999
Q ss_pred CCEEEEeeeeCCCCeEEEEeecCceecccccccCHHHHHHHHHH
Q 007558 415 GDILLVTGYYNSAPQFRFVKRKNVLLSIDSDKTDEAELQKGIDN 458 (598)
Q Consensus 415 GDvV~v~gf~~~~P~i~f~gR~~~~l~~~GEki~e~~v~~av~~ 458 (598)
||+++++. ...+.|+||.+|+++++|++|++.+||+++.+
T Consensus 380 GDl~~~~~----~G~l~~~GR~dd~ik~~G~~v~p~eiE~~l~~ 419 (501)
T 3ipl_A 380 GDIAEIDH----EGYVMIYDRRKDLIISGGENIYPYQIETVAKQ 419 (501)
T ss_dssp EEEEEECT----TSCEEEEEECCCCEECSSCEECHHHHHHHHTT
T ss_pred CCEEEEcC----CCeEEEEccccceEEECCEEECHHHHHHHHHh
Confidence 99999973 67999999999999999999999999999865
No 34
>1amu_A GRSA, gramicidin synthetase 1; peptide synthetase, adenylate forming; HET: PHE AMP; 1.90A {Brevibacillus brevis} SCOP: e.23.1.1
Probab=99.33 E-value=5.5e-11 Score=132.82 Aligned_cols=129 Identities=12% Similarity=0.178 Sum_probs=82.4
Q ss_pred eEEEEeCchhhhHHHHHhhcCCCCeecccccccccccc-cc-C-CCCC--CCCCCceeeecCCeEEEeecCCCCCCCCCC
Q 007558 307 LDVIVTGAMAQYIPTLDHYSGGLPLACTMYASSECFFG-LN-M-KPMC--KPSEVSYTIMPNMGYFEFLPHDPNSPPLSP 381 (598)
Q Consensus 307 l~~~~~g~~~~y~~~l~~~~~g~~v~~~~ygaSEg~~~-i~-~-~~~~--~~~~~~~~l~~~~~ffEFip~~~~~~~~~~ 381 (598)
++.+++||.....+.++.+...++++ +.||+||+.+. .. . .... .....+. ..++. -+..++.+.
T Consensus 295 lr~~~~gG~~l~~~~~~~~~~~~~~~-~~YG~TE~~~~~~~~~~~~~~~~~~~~vG~-p~~~~-~v~i~d~~~------- 364 (563)
T 1amu_A 295 IQTLITAGSATSPSLVNKWKEKVTYI-NAYGPTETTICATTWVATKETIGHSVPIGA-PIQNT-QIYIVDENL------- 364 (563)
T ss_dssp CSEEEEESSCCCHHHHHHHTTTSEEE-EEECCGGGSSCSEEEECCSSCCCSSCCCBE-ECTTE-EEEEECTTS-------
T ss_pred ccEEEEEEecCCHHHHHHHHhCCeEE-EEECcCHHhHhheeeecccccCCCCCcccc-eeCCC-EEEEECCCc-------
Confidence 55666666422223333333347788 99999997432 21 1 1100 0001122 22322 233444221
Q ss_pred CCCCccccccccCCCCeEEEEEcc---ccccc--------------------ccccCCEEEEeeeeCCCCeEEEEeecCc
Q 007558 382 ESPPRLVDLAHVQVGKQYELVVTT---YAGLN--------------------RYRVGDILLVTGYYNSAPQFRFVKRKNV 438 (598)
Q Consensus 382 ~~~~~~v~~~eve~G~~yelvvTt---~~GL~--------------------RYr~GDvV~v~gf~~~~P~i~f~gR~~~ 438 (598)
.++.+|+.|||+|+. ..||| .|+|||+++++. ...+.|+||.+|
T Consensus 365 ---------~~~~~g~~GEl~v~g~~v~~GY~~~pe~t~~~f~~~~~~~g~~w~~TGDlg~~d~----dG~l~i~GR~~d 431 (563)
T 1amu_A 365 ---------QLKSVGEAGELCIGGEGLARGYWKRPELTSQKFVDNPFVPGEKLYKTGDQARWLS----DGNIEYLGRIDN 431 (563)
T ss_dssp ---------CBCCTTCEEEEEEEETTCCCEETTCHHHHHHHEEECSSSTTSEEEEEEEEEEECT----TSCEEEEEEGGG
T ss_pred ---------CCCCCCCcEEEEEechhhChhhCCCchhhhhhcccCCCCCCCEEEecCCEEEEcC----CCeEEEeccccC
Confidence 245679999999975 35665 499999999983 678999999999
Q ss_pred eecccccccCHHHHHHHHHH
Q 007558 439 LLSIDSDKTDEAELQKGIDN 458 (598)
Q Consensus 439 ~l~~~GEki~e~~v~~av~~ 458 (598)
+|+++|++|++.+||++|.+
T Consensus 432 ~Ik~~G~~V~p~eIE~~l~~ 451 (563)
T 1amu_A 432 QVKIRGHRVELEEVESILLK 451 (563)
T ss_dssp EEEETTEEEEHHHHHHHHTT
T ss_pred EEEECCEEeCHHHHHHHHHh
Confidence 99999999999999999965
No 35
>4dg8_A PA1221; ANL superfamily, adenylation domain, peptidyl carrier protei ribosomal peptide synthetase, NRPS, valine adenylation, LIG; HET: AMP; 2.15A {Pseudomonas aeruginosa} PDB: 4dg9_A*
Probab=99.31 E-value=9.6e-12 Score=140.72 Aligned_cols=130 Identities=15% Similarity=0.162 Sum_probs=85.8
Q ss_pred eEEEEeCch---hhhHHHHHhhcCCCCeecccccccccccccc---CCCCC---CCCCCceeeecCCeEEEeecCCCCCC
Q 007558 307 LDVIVTGAM---AQYIPTLDHYSGGLPLACTMYASSECFFGLN---MKPMC---KPSEVSYTIMPNMGYFEFLPHDPNSP 377 (598)
Q Consensus 307 l~~~~~g~~---~~y~~~l~~~~~g~~v~~~~ygaSEg~~~i~---~~~~~---~~~~~~~~l~~~~~ffEFip~~~~~~ 377 (598)
++.+++||. .....++.+.+++++++ +.||+||+.+... ..+.. .....+. ..++. -+..++.+..
T Consensus 278 lr~v~~gGe~l~~~~~~~~~~~~~~~~l~-n~YG~TE~~~~~~~~~~~~~~~~~~~~~iG~-p~~~~-~~~i~d~~~~-- 352 (620)
T 4dg8_A 278 LRQLLTGGDILSVPHVRRALLRHPRLHLV-NGYGPTENTTFTCCHVVTDDDLEEDDIPIGK-AIAGT-AVLLLDEHGQ-- 352 (620)
T ss_dssp CSEEEEESSCCCHHHHHHHHHHCTTCEEE-EEECCGGGCSCSEEEECCTGGGGSSSCCCBE-ECTTE-EEEEECTTSC--
T ss_pred ccEEEEEeCcCCHHHHHHHHHhCCCeEEE-eeEchhhhhhheEEEeccccccCCCCCCcee-cccCc-EEEEECccCC--
Confidence 566666763 24445555556789999 9999999743211 11100 0001111 22222 2334443211
Q ss_pred CCCCCCCCccccccccCCCCeEEEEEcc---cccccc---------------------cccCCEEEEeeeeCCCCeEEEE
Q 007558 378 PLSPESPPRLVDLAHVQVGKQYELVVTT---YAGLNR---------------------YRVGDILLVTGYYNSAPQFRFV 433 (598)
Q Consensus 378 ~~~~~~~~~~v~~~eve~G~~yelvvTt---~~GL~R---------------------Yr~GDvV~v~gf~~~~P~i~f~ 433 (598)
+. +.+|+.|||+|.. ..|||. |||||+++++ ....+.|+
T Consensus 353 --------~~-----~~~g~~GEl~i~G~~v~~GY~~~p~~t~~~f~~~p~~~~~~~~yrTGDl~~~~----~dG~l~~~ 415 (620)
T 4dg8_A 353 --------EI-----AEPDRAGEIVAFGAGLAQGYRNDAARTRASFVELPYRGRLLRAYRTGDRARYD----EQGRLRFI 415 (620)
T ss_dssp --------BC-----CSSSCCEEEEEEETTCCSEETTCHHHHHHHEEEEEETTEEEEEEEEEEEEEEC----TTSCEEEE
T ss_pred --------CC-----CCCCCceEEEEeccccccccCCChhhhhhhhccCCCCCCCceEEeCCCEEEEC----CCCeEEEE
Confidence 11 3579999999963 356653 9999999997 36789999
Q ss_pred eecCceecccccccCHHHHHHHHHH
Q 007558 434 KRKNVLLSIDSDKTDEAELQKGIDN 458 (598)
Q Consensus 434 gR~~~~l~~~GEki~e~~v~~av~~ 458 (598)
||.+|+++++|++|.+.|||.+|.+
T Consensus 416 GR~dd~Ik~~G~ri~~~eIE~~l~~ 440 (620)
T 4dg8_A 416 GRGDGQVKLNGYRLDLPALEQRFRR 440 (620)
T ss_dssp ECSSSEEEETTEEEEHHHHHHHHHT
T ss_pred ccCCCEEEECCEEcCHHHHHHHHHh
Confidence 9999999999999999999999976
No 36
>1v25_A Long-chain-fatty-acid-COA synthetase; ligase, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.30A {Thermus thermophilus} SCOP: e.23.1.1 PDB: 1ult_A* 1v26_A*
Probab=99.23 E-value=3.1e-11 Score=134.07 Aligned_cols=128 Identities=15% Similarity=0.175 Sum_probs=81.8
Q ss_pred eEEEEeCch---hhhHHHHHhhcCCCCeeccccccccccccccCCCCC-------C------CCCCceeeecCCeEEEee
Q 007558 307 LDVIVTGAM---AQYIPTLDHYSGGLPLACTMYASSECFFGLNMKPMC-------K------PSEVSYTIMPNMGYFEFL 370 (598)
Q Consensus 307 l~~~~~g~~---~~y~~~l~~~~~g~~v~~~~ygaSEg~~~i~~~~~~-------~------~~~~~~~l~~~~~ffEFi 370 (598)
++.+++||. ....+++ +.+ |++++ +.||+||+...+...... + ....+. ..++. -++.+
T Consensus 295 lr~i~~gG~~l~~~~~~~~-~~~-g~~~~-~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~-p~~~~-~~~i~ 369 (541)
T 1v25_A 295 LRRLVVGGSAAPRSLIARF-ERM-GVEVR-QGYGLTETSPVVVQNFVKSHLESLSEEEKLTLKAKTGL-PIPLV-RLRVA 369 (541)
T ss_dssp CCEEEECSSCCCHHHHHHH-HHT-TCEEE-EEEECGGGSSEEEECCCCGGGTTSCHHHHHHHHTSCBE-ECTTC-EEEEE
T ss_pred ccEEEECCCCCCHHHHHHH-HHh-CCcee-ecccccccccceecccccccccccCccccccccCCCCC-cCCCc-EEEEE
Confidence 667777773 3455666 446 89998 999999974322111110 0 001122 22322 24444
Q ss_pred cCCCCCCCCCCCCCCccccccccCC--CCeEEEEEcc---cccccc--------------cccCCEEEEeeeeCCCCeEE
Q 007558 371 PHDPNSPPLSPESPPRLVDLAHVQV--GKQYELVVTT---YAGLNR--------------YRVGDILLVTGYYNSAPQFR 431 (598)
Q Consensus 371 p~~~~~~~~~~~~~~~~v~~~eve~--G~~yelvvTt---~~GL~R--------------Yr~GDvV~v~gf~~~~P~i~ 431 (598)
+.+. + ++.. |+.|||+|+. ..|||. |+|||+++++. ...+.
T Consensus 370 d~~g-----------~-----~~~~~~~~~GEl~v~g~~v~~GY~~~p~~t~~~f~~~g~~~TGDlg~~d~----dG~l~ 429 (541)
T 1v25_A 370 DEEG-----------R-----PVPKDGKALGEVQLKGPWITGGYYGNEEATRSALTPDGFFRTGDIAVWDE----EGYVE 429 (541)
T ss_dssp CTTS-----------C-----BCCSSSCCCEEEEEESTTSBSSCBTCHHHHHTTBCTTSCEEEEEEEEECT----TCCEE
T ss_pred CCCC-----------C-----CCCCCCCcceEEEEeCcchhccccCChhhhhhhccCCCCeEcCCEEEEcC----CceEE
Confidence 4321 1 2232 3689999975 467774 99999999983 57899
Q ss_pred EEeecCceecccccccCHHHHHHHHHHH
Q 007558 432 FVKRKNVLLSIDSDKTDEAELQKGIDNA 459 (598)
Q Consensus 432 f~gR~~~~l~~~GEki~e~~v~~av~~a 459 (598)
|+||.+|+|+++|++|++.+||++|.+.
T Consensus 430 ~~GR~~d~ik~~G~~v~p~eIE~~l~~~ 457 (541)
T 1v25_A 430 IKDRLKDLIKSGGEWISSVDLENALMGH 457 (541)
T ss_dssp EEEESSCEEEETTEEEEHHHHHCC----
T ss_pred EeecccceeeeCCEEECHHHHHHHHHhC
Confidence 9999999999999999999999999763
No 37
>4gs5_A Acyl-COA synthetase (AMP-forming)/AMP-acid ligase protein; structural genomics, PSI-biology; 2.02A {Dyadobacter fermentans}
Probab=99.21 E-value=7e-11 Score=124.59 Aligned_cols=117 Identities=14% Similarity=0.232 Sum_probs=76.1
Q ss_pred eEEEEeCch---hhhHHHHHhhcCCCCeeccccccccccccccCCCCCCCCCCceeeecCCeEEEeecCCCCCCCCCCCC
Q 007558 307 LDVIVTGAM---AQYIPTLDHYSGGLPLACTMYASSECFFGLNMKPMCKPSEVSYTIMPNMGYFEFLPHDPNSPPLSPES 383 (598)
Q Consensus 307 l~~~~~g~~---~~y~~~l~~~~~g~~v~~~~ygaSEg~~~i~~~~~~~~~~~~~~l~~~~~ffEFip~~~~~~~~~~~~ 383 (598)
++.+++||. ....+++++ + +++++ +.||+||....+...+...+.. .... ++
T Consensus 150 lr~v~~gG~~l~~~~~~~~~~-~-~~~~~-~~YG~TEt~~~~~~~~~~~~~~-------g~~~---~~------------ 204 (358)
T 4gs5_A 150 LGKVLLGGAPVNHALAMQISD-L-AMPVY-QSYGMTETVSHVALKALNGPEA-------SELY---VF------------ 204 (358)
T ss_dssp GCSEEECSSCCCHHHHHHHHT-C-SSCEE-EEEECGGGSSEEEEEECSSTTC-------CSCE---EE------------
T ss_pred ceEEEEcccCCCchheecccc-c-CceEE-eccccccccceeeccccccccc-------ceee---cc------------
Confidence 566666763 344556655 3 78999 9999999643322211111100 0000 11
Q ss_pred CCccccccccCCCCeEEEEEccc---ccccccccCCEEEEeeeeCCCCeEEEEeecCceecccccccCHHHHHHHHHHH
Q 007558 384 PPRLVDLAHVQVGKQYELVVTTY---AGLNRYRVGDILLVTGYYNSAPQFRFVKRKNVLLSIDSDKTDEAELQKGIDNA 459 (598)
Q Consensus 384 ~~~~v~~~eve~G~~yelvvTt~---~GL~RYr~GDvV~v~gf~~~~P~i~f~gR~~~~l~~~GEki~e~~v~~av~~a 459 (598)
.+..++..++.+|+++... .| -|+|||+++++. . .+.|+||.+|+|+++|++|++.+||++|...
T Consensus 205 ----~pgv~~~~~~~Gel~~~g~~~~~g--~~~TGDlg~~d~----~-g~~~~GR~dd~Ik~~G~~v~p~eIE~~l~~~ 272 (358)
T 4gs5_A 205 ----LPGIQYGVDERGCLHISGAVTNGQ--TVQTNDLVEIHG----N-AFQWIGRADNVINSGGVKIVLDQIDQRIAAV 272 (358)
T ss_dssp ----CTTCEEEECTTSEEEEESGGGTTC--CEEEEEEEEECS----S-EEEEEEEGGGEEEETTEEEEHHHHHHHHHHH
T ss_pred ----CCCeEEEecCcCceEEecccccCc--ceecCCcccccc----C-ceEEcccccCeEEECCEEECHHHHHHHHHHh
Confidence 1112345567789988642 33 388999999984 2 3789999999999999999999999988654
No 38
>2vsq_A Surfactin synthetase subunit 3; ligase, peptidyl carrier protein, ligase phosphoprotein, TER module, phosphopantetheine; 2.60A {Bacillus subtilis}
Probab=99.14 E-value=2.5e-10 Score=139.57 Aligned_cols=129 Identities=17% Similarity=0.187 Sum_probs=86.6
Q ss_pred eEEEEeCch---hhhHHHHHhhcCCCCeeccccccccccccccCCC-CC-CCC----CCceeeecCCeEEEeecCCCCCC
Q 007558 307 LDVIVTGAM---AQYIPTLDHYSGGLPLACTMYASSECFFGLNMKP-MC-KPS----EVSYTIMPNMGYFEFLPHDPNSP 377 (598)
Q Consensus 307 l~~~~~g~~---~~y~~~l~~~~~g~~v~~~~ygaSEg~~~i~~~~-~~-~~~----~~~~~l~~~~~ffEFip~~~~~~ 377 (598)
++++++||. .....++.+.+++++++ +.||.||+.+...... .. +.. ..|. ..++..++ .++.+
T Consensus 722 lr~~~~gGe~l~~~~~~~~~~~~~~~~l~-n~YG~TE~~~~~~~~~~~~~~~~~~~~~iG~-p~~~~~~~-i~d~~---- 794 (1304)
T 2vsq_A 722 LRCILFGGERASVPHVRKALRIMGPGKLI-NCYGPTEGTVFATAHVVHDLPDSISSLPIGK-PISNASVY-ILNEQ---- 794 (1304)
T ss_dssp CSEEEEESSCCCHHHHHHHHHHHCTTCEE-EEECCGGGSSCSEEEECCCCCSSCSSCCCBE-ECTTEEEE-EECTT----
T ss_pred ccEEEEecCCCCHHHHHHHHHhCCCCEEE-EeEChhHHhHHheeeeccCccccCCCCCCce-eeCCCEEE-EECCC----
Confidence 566666662 34556666777778899 9999999754221110 00 000 0122 22333222 23321
Q ss_pred CCCCCCCCccccccccCCCCeEEEEEcc---ccccc--------------------ccccCCEEEEeeeeCCCCeEEEEe
Q 007558 378 PLSPESPPRLVDLAHVQVGKQYELVVTT---YAGLN--------------------RYRVGDILLVTGYYNSAPQFRFVK 434 (598)
Q Consensus 378 ~~~~~~~~~~v~~~eve~G~~yelvvTt---~~GL~--------------------RYr~GDvV~v~gf~~~~P~i~f~g 434 (598)
...|..|+.|||+|+. ..||| -|||||+++... ...|+|+|
T Consensus 795 ------------~~~~p~G~~GEl~i~G~~v~~GY~~~p~~T~~~f~~~p~~~g~~~yrTGDl~~~~~----dG~l~~~G 858 (1304)
T 2vsq_A 795 ------------SQLQPFGAVGELCISGMGVSKGYVNRADLTKEKFIENPFKPGETLYRTGDLARWLP----DGTIEYAG 858 (1304)
T ss_dssp ------------SCBCCTTCCEEEEEEETTCCCCBTTCHHHHHHHEEECTTSTTCEEEEEEEEEEECT----TSCEEEEE
T ss_pred ------------cCCCCCCCceEEEEeccccCccccCCcccchhhhccCCCCCCCeeEecCCeEEEcC----CCeEEEEc
Confidence 1245679999999974 35655 399999999984 67899999
Q ss_pred ecCceecccccccCHHHHHHHHHH
Q 007558 435 RKNVLLSIDSDKTDEAELQKGIDN 458 (598)
Q Consensus 435 R~~~~l~~~GEki~e~~v~~av~~ 458 (598)
|.+++++++|++|...|||.+|.+
T Consensus 859 R~d~qvki~G~rie~~eIE~~l~~ 882 (1304)
T 2vsq_A 859 RIDDQVKIRGHRIELEEIEKQLQE 882 (1304)
T ss_dssp EGGGEEEETTEEEEHHHHHHHHHH
T ss_pred CCCCEEEECCEeeCHHHHHHHHHh
Confidence 999999999999999999999976
No 39
>3t5a_A Long-chain-fatty-acid--AMP ligase FADD28; acetyl-COA synthetase like fold, AMP-binding; 2.05A {Mycobacterium tuberculosis} PDB: 3e53_A
Probab=98.41 E-value=1.6e-06 Score=93.86 Aligned_cols=28 Identities=11% Similarity=0.100 Sum_probs=17.2
Q ss_pred CccceeecccccCCCCcccccCChHHHHH
Q 007558 99 HPVSEFLTSSGTSAGERKLMPTIHEELDR 127 (598)
Q Consensus 99 ~pi~~f~~TSGTT~G~~K~IP~T~~~~~~ 127 (598)
+.+.+...||||| |+||-+..|...+..
T Consensus 183 ~d~a~i~~TSGTT-G~PKgV~~th~~l~~ 210 (480)
T 3t5a_A 183 PSTAYLQYTSGST-RTPAGVVMSHQNVRV 210 (480)
T ss_dssp CSEEEEECC-------CCCEEEEHHHHHH
T ss_pred CceEEEEecCCCC-CCCcEEEEeHHHHHH
Confidence 3455888999999 899999999987643
No 40
>3lax_A Phenylacetate-coenzyme A ligase; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 1.43A {Bacteroides vulgatus}
Probab=97.08 E-value=0.0012 Score=56.81 Aligned_cols=93 Identities=9% Similarity=0.040 Sum_probs=58.2
Q ss_pred ecCceecccccccCHHHHHHHHHHHHHHhhhcCCeEEeEEEeecCCCCCceEEEEEEEeecccCCCCChHHHHHHHHHHH
Q 007558 435 RKNVLLSIDSDKTDEAELQKGIDNASLLLKEFNASVIEYTSYADTTTIPGHYVIFWELLVKDAANSPSDEVLNQCCLVVE 514 (598)
Q Consensus 435 R~~~~l~~~GEki~e~~v~~av~~a~~~l~~~g~~l~~f~~~~d~~~~p~~Y~l~~E~e~~~~~~~~~~~~l~~~~~~ld 514 (598)
|.+|||+++|.|+++.+||++|.+. .++. ..+.+..+.......-.+++++.. + ...+...++.+++.+-
T Consensus 2 rADDmIiv~G~nv~P~eIE~vl~~~------p~v~-~~~vv~v~~~~~~~~~~~~V~~~~-~--~~~~~~~~~~l~~~i~ 71 (109)
T 3lax_A 2 NADDMIILKGVNIFPIQIETILLQF------KELG-SDYLITLETAESNDEMTVEVELSQ-L--FTDDYGRLQALTREIT 71 (109)
T ss_dssp GGGSCEEETTEEECHHHHHHHHHTC------TTEE-EEEEEEEEEETTEEEEEEEEEECT-T--CCCCHHHHHHHHHHHH
T ss_pred CcCEEEEECCEEECHHHHHHHHHhC------CCcc-cceEEEEeccccceeEEEEEEEee-c--cccccchhhhhHHHHH
Confidence 8999999999999999999999653 2221 123332222112223446666642 2 2345566677777777
Q ss_pred HHhChhhHhccccCCccCCeEEEEeCCChHHH
Q 007558 515 ESLNSVYRQGRVADNSIGPLEIRVVKNGTFEE 546 (598)
Q Consensus 515 ~~Ln~~Y~~~R~~~g~l~p~~v~~v~~gtF~~ 546 (598)
+.+ +...| + ++.|++|++|++.+
T Consensus 72 ~~l-------~~~~g-v-~~~v~~v~~~~lPr 94 (109)
T 3lax_A 72 RQL-------KDEIL-V-TPRVKLVPKGALPK 94 (109)
T ss_dssp HHH-------HHHHS-S-CCEEEEECTTCSCC
T ss_pred HHH-------HHHhC-C-ccceEEEcCCeecC
Confidence 766 32222 3 45899999999874
No 41
>3gxs_A Phenylacetate-coenzyme A ligase; APC62324.1, structural genomics, PSI-2, protein structure initiative; 1.43A {Bacteroides vulgatus atcc 8482} PDB: 3lax_A
Probab=96.95 E-value=0.0021 Score=55.32 Aligned_cols=94 Identities=9% Similarity=0.062 Sum_probs=56.9
Q ss_pred eecCceecccccccCHHHHHHHHHHHHHHhhhcCCeEEeEEEeecCCCCCceEEEEEEEeecccCCCCChHHHHHHHHHH
Q 007558 434 KRKNVLLSIDSDKTDEAELQKGIDNASLLLKEFNASVIEYTSYADTTTIPGHYVIFWELLVKDAANSPSDEVLNQCCLVV 513 (598)
Q Consensus 434 gR~~~~l~~~GEki~e~~v~~av~~a~~~l~~~g~~l~~f~~~~d~~~~p~~Y~l~~E~e~~~~~~~~~~~~l~~~~~~l 513 (598)
||.+|||+++|.++++.+||++|.+. + ++. ..|.+..+.....-.-++++|+ . +. ...+....+.+++.+
T Consensus 1 GR~~D~Iiv~G~nv~P~eIE~~l~~~-p-----~v~-~~~~v~v~~~~~~e~l~~~ve~-~-~~-~~~~~~~~~~l~~~i 70 (109)
T 3gxs_A 1 SNADDMIILKGVNIFPIQIETILLQF-K-----ELG-SDYLITLETAESNDEMTVEVEL-S-QL-FTDDYGRLQALTREI 70 (109)
T ss_dssp CGGGSCEEETTEEECHHHHHHHHHTC-T-----TEE-EEEEEEEEEETTEEEEEEEEEE-C-TT-CCCCHHHHHHHHHHH
T ss_pred CCccCEEEECCEEECHHHHHHHHHhC-C-----CcC-CcEEEEEEcCCCceEEEEEEEE-c-Cc-cccchhHHHHHHHHH
Confidence 79999999999999999999999763 2 221 1344332211111244577777 2 31 011123445556666
Q ss_pred HHHhChhhHhccccCCccCCeEEEEeCCChHHH
Q 007558 514 EESLNSVYRQGRVADNSIGPLEIRVVKNGTFEE 546 (598)
Q Consensus 514 d~~Ln~~Y~~~R~~~g~l~p~~v~~v~~gtF~~ 546 (598)
.+.+ +...| +. ++|.+|++|++.+
T Consensus 71 ~~~l-------~~~~~-~~-~~v~~v~~~~lPr 94 (109)
T 3gxs_A 71 TRQL-------KDEIL-VT-PRVKLVPKGALPK 94 (109)
T ss_dssp HHHH-------HHHHS-SC-CEEEEECTTCSCC
T ss_pred HHHH-------HHhhC-Cc-eEEEEECCCCccC
Confidence 6666 32232 44 4999999999764
No 42
>3onr_A Protein transport protein SECE2; calcium dodecin, calcium binding protein, dodecamer, imuuno antigen, metal binding protein; 1.80A {Mycobacterium tuberculosis}
Probab=21.56 E-value=2.5e+02 Score=21.86 Aligned_cols=48 Identities=21% Similarity=0.101 Sum_probs=35.1
Q ss_pred ccCHHHHHHHHHHHHHHhhh-cCCeEEeEEEeecCCCCCceEEEEEEEee
Q 007558 446 KTDEAELQKGIDNASLLLKE-FNASVIEYTSYADTTTIPGHYVIFWELLV 494 (598)
Q Consensus 446 ki~e~~v~~av~~a~~~l~~-~g~~l~~f~~~~d~~~~p~~Y~l~~E~e~ 494 (598)
+=.++.+++||.+|.+.++. .+++|.+..+..+. +.-.||.+-+.+.|
T Consensus 16 ~S~edAi~nAi~~AskTl~ni~~~eV~e~~~~v~d-gkv~~yqv~lKV~F 64 (72)
T 3onr_A 16 TSWEQAAAEAVQRARDSVDDIRVARVIEQDMAVDS-AGKITYRIKLEVSF 64 (72)
T ss_dssp SCHHHHHHHHHHHHHHHCSCCCEEEEEEEEEEECT-TCCEEEEEEEEEEE
T ss_pred CCHHHHHHHHHHHHHhcccCCeEEEEEEEEEEEeC-CcEEEEEEEEEEEE
Confidence 44588899999999987742 23577788776654 35679998888776
Done!