Query 007559
Match_columns 598
No_of_seqs 222 out of 819
Neff 6.8
Searched_HMMs 29240
Date Mon Mar 25 04:47:51 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007559.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/007559hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3lwt_X Phosphoinositide phosph 100.0 3E-128 1E-132 1060.0 40.0 470 13-565 28-505 (505)
2 3k9o_A Ubiquitin-conjugating e 25.6 1.9E+02 0.0066 26.9 8.0 100 453-564 93-200 (201)
3 3e46_A Ubiquitin-conjugating e 17.6 3.1E+02 0.011 26.8 7.7 101 453-565 145-253 (253)
4 3r45_C Holliday junction recog 9.6 1.6E+02 0.0054 23.4 2.2 19 291-309 26-44 (81)
5 4f8x_A Endo-1,4-beta-xylanase; 8.8 2.4E+02 0.0081 28.7 3.9 84 290-375 105-202 (335)
6 1ta3_B Endo-1,4-beta-xylanase; 7.9 1.8E+02 0.006 29.1 2.4 47 261-312 78-124 (303)
7 3v7e_A Ribosome-associated pro 7.6 4.7E+02 0.016 20.5 4.5 21 294-314 40-60 (82)
8 2q3l_A Uncharacterized protein 7.6 5.8E+02 0.02 21.5 5.4 42 14-55 10-51 (126)
9 2l3g_A RHO guanine nucleotide 7.6 2E+02 0.0068 24.9 2.3 35 447-481 92-126 (126)
10 2lyd_B Pacman protein; DCP1, X 7.2 41 0.0014 22.6 -1.7 7 267-273 25-31 (38)
No 1
>3lwt_X Phosphoinositide phosphatase SAC1; SAC3/FIG4, lipid metabol endoplasmic reticulum, hydrolase, membrane, transmembrane; 1.96A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.9e-128 Score=1060.01 Aligned_cols=470 Identities=27% Similarity=0.509 Sum_probs=365.7
Q ss_pred EEEEEeccCCCCceeeeCCcccCHHHHHHHHHHhhcCCCcCCCceeeeEEEEEEEEEEEcCceEEEEEeCeeEeeEeCCc
Q 007559 13 RVLKIYRLEPSELNIVEDSATYSDFEYLDLLRRVHDGNRSTGGLKLVTKCFGIVGFIKFLEPYYMLLVTGRKKIGVICGH 92 (598)
Q Consensus 13 r~lkidr~~~~~l~i~ed~~~y~~~e~~~ll~~~~~~~~~~g~~~~~~~~~GilG~i~~~~~~YLivIT~~~~Vg~i~gh 92 (598)
.+|-|||.+. ++.+.+... + ...+ .+.+++||||+|+|++++||+|||++++||.|+||
T Consensus 28 ~~l~i~r~~~-~~~~~~~~~-------------~----~~~~---~~~~i~GilG~i~l~~~~YlivIT~~~~vg~i~gh 86 (505)
T 3lwt_X 28 AVIHLANQDQ-GVRVLGAEE-------------F----PVQG---EVVKIASLMGFIKLKLNRYAIIANTVEETGRFNGH 86 (505)
T ss_dssp CEEEEETTTC-CEEEECGGG-------------S----CSSS---CCEEESEEEEEEEETTEEEEEEEEEEEEEEEETTE
T ss_pred ceEEEEcCCC-eEEeccccc-------------C----CCcC---ceeEEEEEEEEEEECCCcEEEEEEccEEEEEECCe
Confidence 4899999874 455443211 0 1112 26789999999999999999999999999999999
Q ss_pred eEEEEeeeeEEecCCCCcccccccchhHHHHHHHhhcCCCCCceEEeecccccccccccccCCC-CCCCCcccccccchh
Q 007559 93 AVYSIKKSEIIPIPHSSVLSNLAYSKNEKRYKKLLSSVDLTKDFFFSYSYNIMNSLQKNLCNNG-TGQSQYESMFVWNHF 171 (598)
Q Consensus 93 ~IY~I~~~~~i~i~~~~~~~~~~~~~~E~r~~kll~~~~ls~~FYFSytyDLT~slQ~n~~~~~-~~~~~~~~~F~WN~~ 171 (598)
.||+|++++|||++.+. ..+++|.+|+++|+.++++++|||||+||||+++|++..... ..+..+|++|+||++
T Consensus 87 ~Iy~I~~~~~ipl~~~~-----~~~~~E~~yl~ll~~~l~s~~FYfS~~yDLT~slQ~~~~~~~~~~~~~~d~~F~WN~~ 161 (505)
T 3lwt_X 87 VFYRVLQHSIVSTKFNS-----RIDSEEAEYIKLLELHLKNSTFYFSYTYDLTNSLQRNEKVGPAASWKTADERFFWNHY 161 (505)
T ss_dssp EEEEEEEEEEEESCTTC-----CCCHHHHHHHHHHHHHHHHCCCEECSSSCTTSCHHHHHHHCSCCCGGGSCTTTCTTTG
T ss_pred EEEEEEEEEEEEecCcc-----ccChhHHHHHHHHHHHhcCCCEEEeCCcCCCcchhhccccCccccccCCCCceechHH
Confidence 99999999999998542 246899999999999999999999999999999999865432 345567999999999
Q ss_pred hhHHHHhhcc----CCCceeEeeeeeeEeeEEEeecceeEEEEEEEeeccCcCcccccccCCCCCccceeeeEeEEEEec
Q 007559 172 LTRGIRNTLK----NNQWTVALVYGFFKQENLSVAGRDFKFTLIARRSRHYAGTRYLKRGVNEKGRVANDVETEQIVVED 247 (598)
Q Consensus 172 L~~~~~~~~~----~~~w~~~lI~Gfv~q~~~~~~g~~~~~tLISRRS~~raGtRy~~RGid~~G~VAN~VETEqIv~~~ 247 (598)
|+++|++... ...|++|+|||||++..+.+.|+.+.+||||||||+||||||++||||++|+|||||||||||+.+
T Consensus 162 l~~~l~~~~~~~~~~~~~~~piI~Gfv~~~~~~~~~~~~~~tLISRRS~~raGtRy~~RGidd~G~VANfVETEqIv~~~ 241 (505)
T 3lwt_X 162 LTEDLRNFAHQDPRIDSFIQPVIYGYAKTVDAVLNATPIVLGLITRRSIFRAGTRYFRRGVDKDGNVGNFNETEQILLAE 241 (505)
T ss_dssp GGHHHHHHHTTCGGGGGGCCCCBSSEEEEEEEEETTEEEEEEEEEEECCCCCSSSCCSSSBCTTSCCSCEEEEEEEEEEE
T ss_pred HHHHHHHhcccCcchhhhhhHhhcCceEEEEEEECCceEEEEEEEEEecccCCccccccCcCCCCCccceeeEEEEEEeC
Confidence 9999986432 357999999999999999999999999999999999999999999999999999999999999987
Q ss_pred CCCCCCceEEEEEEEecCcceeeeecCCCCCcccceEEcCCCCchHHHHHHHHHHHHhhCCcEEEEecccCCCCCcccch
Q 007559 248 VPEGYPMQISSVVQVRGSIPLFWSQETSWMNIKPDIILSKKDKKYEATRLHFENLAKRYGNPIIVLNLIKTNEKKPRETI 327 (598)
Q Consensus 248 ~~~~~~~~~~SfVQiRGSVPlfWsQ~~~~l~~kp~I~~~~~d~~~~a~~~HF~~L~~rYG~pi~vvNLl~~~e~k~~E~~ 327 (598)
...+.+..++||||+||||||||+|.+ .+.+||+|.+. +++++||.+||++|.++||. ++|||||+++ ++|..
T Consensus 242 ~~~~~~~~~~SfvQiRGSVPlfW~Q~~-~l~~kP~i~i~--~~~~~a~~kHF~~L~~~YG~-~~iVNLl~~k---~~E~~ 314 (505)
T 3lwt_X 242 NPESEKIHVFSFLQTRGSVPIYWAEIN-NLKYKPNLVLG--ENSLDATKKHFDQQKELYGD-NYLVNLVNQK---GHELP 314 (505)
T ss_dssp CTTTCCEEEEEEEEEEECCCSBSCCCC-CSSSCCCCCCC--HHHHHHHHHHHHHHHHHHSE-EEEEEECCCS---SCCCH
T ss_pred CCCCCCccEEEEEEeccccCceeeecC-CcCcCCCeeec--CchHHHHHHHHHHHHHHhCC-cEEEecccCC---CchhH
Confidence 644344589999999999999999975 57899999885 45999999999999999998 5689999974 56999
Q ss_pred HHHHHHHHHHHHhhcCCCCCCeeEEEeecccccc--ccccHHHHHHHHHHhhhhhcceeeeccCCCcccccccccccCCC
Q 007559 328 LRAEFSNAIRFINKDLSKENRLKFLSYDLQKHSR--KAINALQILGRAGAYALSLTGIFYCQVTPKPEGLLNLSCIERSD 405 (598)
Q Consensus 328 L~~~f~~~v~~ln~~lp~~~~i~y~~fD~h~~~K--k~~nv~~~l~~ia~~~l~~~gff~~~~~~~~~~~~~~~~~~~~~ 405 (598)
|+++|+++|+++|. ++|+|++||||++|| +..++..+++.+++..++..|||+....+.
T Consensus 315 L~~~y~~~v~~l~~-----~~i~y~~fDfh~~~k~~~~~~v~~ll~~l~~~~~~~~g~f~~~~~~~-------------- 375 (505)
T 3lwt_X 315 VKEGYESVVHALND-----PKIHYVYFDFHHECRKMQWHRVKLLIDHLEKLGLSNEDFFHKVIDSN-------------- 375 (505)
T ss_dssp HHHHHHHHHHHHCC-----TTEEEEEECCCSSTTTHHHHHHHHHHHHHHHHTCCTTCSEEEEECTT--------------
T ss_pred HHHHHHHHHHHhcc-----cCCceEEecchHhhhccchhHHHHHHHHHHHhcccccCceEeeccCC--------------
Confidence 99999999999973 579999999999999 667888888999888888899998643210
Q ss_pred CCCCcccCCCCccccccccccCCCCCCCCCCCCCccceeeeeEEeeecCccchhhhHHHHHHHHHHHHHHHHHcCCCCCC
Q 007559 406 DDYPQNLSHKNEDAETVDREVSSGSHVPSANLSIKVPILQKGVLRTNCIDCLDRTNVAQYAYGVVALGLQLKTLGLLKSP 485 (598)
Q Consensus 406 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Q~GV~RtNClDCLDRTNv~Q~~i~~~~L~~qL~~lg~~~~~ 485 (598)
| ...++...|+||+||||+||||||||||++||+.+|++||+++|+...+
T Consensus 376 -----------------------------g-~~~~~~~~Q~GV~RtNCiDCLDRTNvvQ~~i~~~~L~~qL~~lgi~~~~ 425 (505)
T 3lwt_X 376 -----------------------------G-NTVEIVNEQHSVVRTNCMDCLDRTNVVQSVLAQWVLQKEFESADVVATG 425 (505)
T ss_dssp -----------------------------S-CEEEEEECCCEEEEEETTSCHHHHHHHHHHHHHHHHHHHHHHTTSSCTT
T ss_pred -----------------------------C-CccceeeccceEEEEecccccccchHHHHHHHHHHHHHHHHHcCCCCCc
Confidence 0 0135788999999999999999999999999999999999999998765
Q ss_pred C-CCCCchHHHHHHHHHHHhhhHhHhhhcCCcccchhhhhhccccccccchHHHHHHHHHHHhhccCChhhHHHHHHHhc
Q 007559 486 N-IGLDNPLAKDLMGIYETMGDTLALQYGGSAAHNKIFCERRGQWRAATQSQEFLRTLQRYYSNTYVDAEKQNAINVFLG 564 (598)
Q Consensus 486 ~-~~~~~~~~~~l~~lw~~~GD~iS~qYaGT~A~~~~~t~r~g~~~~~~~~~D~~~S~~Ryy~N~F~D~~kQ~aInLfLG 564 (598)
. ++.++++...|++||++|||+||+|||||+|+|++|| |+|||+.+|+++|+++|++|||+|||.|+.||+|||||||
T Consensus 426 ~~~~~~~~~~~~f~~lWadnGD~iS~qYaGT~Alkt~~t-R~gk~~~~g~l~D~~~S~~Ryy~NnF~D~~rQ~aidl~LG 504 (505)
T 3lwt_X 426 STWEDNAPLLTSYQNLWADNADAVSVAYSGTGALKTDFT-RTGKRTRLGAFNDFLNSASRYYQNNWTDGPRQDSYDLFLG 504 (505)
T ss_dssp CCGGGCHHHHHHHHHHHHHHHHHHTTTCCCCC------------------------------------------------
T ss_pred cccccCHHHHHHHHHHHHHhhHHHHHHhcCCccccCcee-eceeechhhhHHHHHHhHhheeecccCcHHHHHHHHHHcC
Confidence 5 4567889999999999999999999999999999998 9999999999999999999999999999999999999999
Q ss_pred C
Q 007559 565 H 565 (598)
Q Consensus 565 ~ 565 (598)
+
T Consensus 505 n 505 (505)
T 3lwt_X 505 G 505 (505)
T ss_dssp -
T ss_pred C
Confidence 6
No 2
>3k9o_A Ubiquitin-conjugating enzyme E2 K; E2-25K, complex structure, ATP-binding, isopeptide BO ligase, nucleotide-binding, UBL conjugation pathway; 1.80A {Homo sapiens} PDB: 3k9p_A 1yla_A 2o25_A
Probab=25.64 E-value=1.9e+02 Score=26.95 Aligned_cols=100 Identities=15% Similarity=0.214 Sum_probs=59.5
Q ss_pred cCccchh-----hhHHHHHHHHHHHHHHHHHcCCCCCCCCCCCchHHHHHH---HHHHHhhhHhHhhhcCCcccchhhhh
Q 007559 453 CIDCLDR-----TNVAQYAYGVVALGLQLKTLGLLKSPNIGLDNPLAKDLM---GIYETMGDTLALQYGGSAAHNKIFCE 524 (598)
Q Consensus 453 ClDCLDR-----TNv~Q~~i~~~~L~~qL~~lg~~~~~~~~~~~~~~~~l~---~lw~~~GD~iS~qYaGT~A~~~~~t~ 524 (598)
|+|-|.. .++-+-+++...| |. ...|.-..+.++++.++ +.|....-.....||+..+....+-.
T Consensus 93 Cl~iL~~~W~p~~~i~~vL~~i~~l---l~----~p~p~~p~n~~aa~~~~~~~~~f~~~a~~~~~~~a~~~~~~~~~ee 165 (201)
T 3k9o_A 93 CLDILKDQWAAAMTLRTVLLSLQAL---LA----AAEPDDPQDAVVANQYKQNPEMFKQTARLWAHVYAGAPVSSPEYTK 165 (201)
T ss_dssp CCGGGTTTCCTTCCHHHHHHHHHHH---HH----SCCTTSCSCHHHHHHHHHCHHHHHHHHHHHHHHHHCCCCCCHHHHH
T ss_pred eCcccccCCCCCCCHHHHHHHHHHH---hc----CCCCCCcccHHHHHHHHHCHHHHHHHHHHHHHHhcccccccchhHH
Confidence 8888742 2444444443332 21 22344456666776665 46777788888999998776544433
Q ss_pred hccccccccchHHHHHHHHHHHhhccCChhhHHHHHHHhc
Q 007559 525 RRGQWRAATQSQEFLRTLQRYYSNTYVDAEKQNAINVFLG 564 (598)
Q Consensus 525 r~g~~~~~~~~~D~~~S~~Ryy~N~F~D~~kQ~aInLfLG 564 (598)
+..+...+|..++-...+-+.. +.+-..|++.+++
T Consensus 166 kV~~l~~MGf~~~~a~~AL~~~-----~wd~~~A~e~L~~ 200 (201)
T 3k9o_A 166 KIENLCAMGFDRNAVIVALSSK-----SWDVETATELLLS 200 (201)
T ss_dssp HHHHHHTTTCCHHHHHHHHHHT-----TTCHHHHHHHHHH
T ss_pred HHHHHHHcCCCHHHHHHHHHHc-----CCCHHHHHHHHhc
Confidence 4455555676676665555444 3456677877776
No 3
>3e46_A Ubiquitin-conjugating enzyme E2-25 kDa; huntington interacting, ligase, alternative splicing, cytoplasm, UBL conjugation, UBL conjugation pathway; 1.86A {Homo sapiens} SCOP: a.5.2.1 d.20.1.1 PDB: 3f92_A*
Probab=17.60 E-value=3.1e+02 Score=26.76 Aligned_cols=101 Identities=16% Similarity=0.226 Sum_probs=57.6
Q ss_pred cCccchh-----hhHHHHHHHHHHHHHHHHHcCCCCCCCCCCCchHHHHHH---HHHHHhhhHhHhhhcCCcccchhhhh
Q 007559 453 CIDCLDR-----TNVAQYAYGVVALGLQLKTLGLLKSPNIGLDNPLAKDLM---GIYETMGDTLALQYGGSAAHNKIFCE 524 (598)
Q Consensus 453 ClDCLDR-----TNv~Q~~i~~~~L~~qL~~lg~~~~~~~~~~~~~~~~l~---~lw~~~GD~iS~qYaGT~A~~~~~t~ 524 (598)
|+|-|.. .++-+-+++...| |. ...|.-..+.++++.++ +.|....-.....||+.......+..
T Consensus 145 CL~iL~~~WsP~~ti~~vL~sI~~l---l~----~pnp~~Pln~eaa~l~~~d~~~f~~~ar~~t~~yA~~~~~~~~~~~ 217 (253)
T 3e46_A 145 CLDILKDQWAAAMTLRTVLLSLQAL---LA----AAEPDDPQDAVVANQYKQNPEMFKQTARLWAHVYAGAPVSSPEYTK 217 (253)
T ss_dssp CCGGGTTCCCTTCCHHHHHHHHHHH---HH----SCCTTSCSCHHHHHHHHHCHHHHHHHHHHHHHHHHCCSCCCHHHHH
T ss_pred ecccccCCCCCCCCHHHHHHHHHHH---hc----CCCCCChhhHHHHHHHHHCHHHHHHHHHHHHHHhcccccCcchHHH
Confidence 8887732 2444444443322 21 22344455666766664 46777777888899998765544433
Q ss_pred hccccccccchHHHHHHHHHHHhhccCChhhHHHHHHHhcC
Q 007559 525 RRGQWRAATQSQEFLRTLQRYYSNTYVDAEKQNAINVFLGH 565 (598)
Q Consensus 525 r~g~~~~~~~~~D~~~S~~Ryy~N~F~D~~kQ~aInLfLG~ 565 (598)
+..+...+|..+|....+-+.. +.+...|++.++|+
T Consensus 218 ~v~~l~~mgf~~~~~~~al~~~-----nWd~~~A~e~L~~~ 253 (253)
T 3e46_A 218 KIENLCAAGFDRNAVIVALSSK-----SWDVETATELLLSN 253 (253)
T ss_dssp HHHHHHHTTCCHHHHHHHHHHT-----TTCHHHHHHHHHHC
T ss_pred HHHHHHHcCCCHHHHHHHHHHc-----CCCHHHHHHHHhcC
Confidence 3344444555555544433322 55677888888763
No 4
>3r45_C Holliday junction recognition protein; histone fold, centromere, CENP-A, histone chaperone, hjurp; 2.60A {Homo sapiens}
Probab=9.61 E-value=1.6e+02 Score=23.36 Aligned_cols=19 Identities=16% Similarity=0.405 Sum_probs=15.9
Q ss_pred chHHHHHHHHHHHHhhCCc
Q 007559 291 KYEATRLHFENLAKRYGNP 309 (598)
Q Consensus 291 ~~~a~~~HF~~L~~rYG~p 309 (598)
+-.-|++|+.+|+++|+.|
T Consensus 26 sr~RFQ~~Mq~lieKYn~P 44 (81)
T 3r45_C 26 SRRRFQRRMQRLIEKYNQP 44 (81)
T ss_dssp HHHHHHHHHHHHHHHHCSC
T ss_pred HHHHHHHHHHHHHHHcCCC
Confidence 4556899999999999876
No 5
>4f8x_A Endo-1,4-beta-xylanase; TIM barrel, hydrolase; HET: NAG BMA; 1.47A {Penicillium canescens}
Probab=8.83 E-value=2.4e+02 Score=28.74 Aligned_cols=84 Identities=14% Similarity=0.150 Sum_probs=43.7
Q ss_pred CchHHHHHHHHHHHHhhCCcEE---EEecccCCC--CC-------cccchHHHHHHHHHHHHhhcCCCCCCeeEEEeecc
Q 007559 290 KKYEATRLHFENLAKRYGNPII---VLNLIKTNE--KK-------PRETILRAEFSNAIRFINKDLSKENRLKFLSYDLQ 357 (598)
Q Consensus 290 ~~~~a~~~HF~~L~~rYG~pi~---vvNLl~~~e--~k-------~~E~~L~~~f~~~v~~ln~~lp~~~~i~y~~fD~h 357 (598)
...+++..|+..+..||+..|. |||=.-... -+ -.|.-+..+|+.|=+.+++...+.-++-|- ||.
T Consensus 105 ~l~~~~~~~I~~v~~rY~g~i~~WDVvNE~~~~~g~~r~s~~~~~lG~~~i~~aF~~Ar~a~~~~~dP~a~L~~N--DYn 182 (335)
T 4f8x_A 105 ELTAVMKNHIFKTVQHFGRRCYSWDVVNEALNGDGTFSSSVWYDTIGEEYFYLAFKYAQEALAQIGANDVKLYYN--DYG 182 (335)
T ss_dssp HHHHHHHHHHHHHHHHHGGGCSEEEEEESCBCTTSSBCCCHHHHHHCTHHHHHHHHHHHHHHHHTTCTTSEEEEE--ESS
T ss_pred HHHHHHHHHHHHHHHHhCCCceEEEEecCccCCCCccccCchhhhcCHHHHHHHHHHHHHhccccCCCCcEEEEe--ccc
Confidence 3467789999999999976554 455321100 01 113345566766655554432333344444 554
Q ss_pred ccc--cccccHHHHHHHHHH
Q 007559 358 KHS--RKAINALQILGRAGA 375 (598)
Q Consensus 358 ~~~--Kk~~nv~~~l~~ia~ 375 (598)
-+. .|...++.+++.+.+
T Consensus 183 ~e~~~~k~~~~~~lv~~l~~ 202 (335)
T 4f8x_A 183 IENPGTKSTAVLQLVSNLRK 202 (335)
T ss_dssp CSSSSHHHHHHHHHHHHHHH
T ss_pred ccCCcHhHHHHHHHHHHHHH
Confidence 332 133444555554443
No 6
>1ta3_B Endo-1,4-beta-xylanase; beta alpha barrel (XIP-I), beta alpha barrel (xylanase), HYD inhibitor-hydrolase complex; HET: NAG; 1.70A {Emericella nidulans} SCOP: c.1.8.3
Probab=7.91 E-value=1.8e+02 Score=29.10 Aligned_cols=47 Identities=23% Similarity=0.381 Sum_probs=28.0
Q ss_pred EEecCcceeeeecCCCCCcccceEEcCCCCchHHHHHHHHHHHHhhCCcEEE
Q 007559 261 QVRGSIPLFWSQETSWMNIKPDIILSKKDKKYEATRLHFENLAKRYGNPIIV 312 (598)
Q Consensus 261 QiRGSVPlfWsQ~~~~l~~kp~I~~~~~d~~~~a~~~HF~~L~~rYG~pi~v 312 (598)
.+||-.|++=+|.+..+...+ ..+...++...|...+.+||+..|..
T Consensus 78 ~v~ghtlvW~~q~P~W~~~~~-----~~~~~~~~~~~~i~~v~~rY~g~v~~ 124 (303)
T 1ta3_B 78 KVRGHTLVWHSQLPSWVSSIG-----DANTLRSVMTNHINEVVGRYKGKIMH 124 (303)
T ss_dssp EEEEEEEECSSSCCHHHHTCC-----CHHHHHHHHHHHHHHHHHHTTTSCSE
T ss_pred EEEEeeccccCCCChhhhcCC-----CHHHHHHHHHHHHHHHHHhcCCcceE
Confidence 578887773244333221110 11223578899999999999765543
No 7
>3v7e_A Ribosome-associated protein L7AE-like; RNA-protein complex, K-turn, L7AE-like, A member L7AE/L30E superfamily; HET: SAM; 2.80A {Bacillus subtilis}
Probab=7.63 E-value=4.7e+02 Score=20.45 Aligned_cols=21 Identities=14% Similarity=0.159 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHhhCCcEEEEe
Q 007559 294 ATRLHFENLAKRYGNPIIVLN 314 (598)
Q Consensus 294 a~~~HF~~L~~rYG~pi~vvN 314 (598)
...+|+..+.+.|+.|++.+.
T Consensus 40 ~~~~~i~~lc~~~~Ip~~~v~ 60 (82)
T 3v7e_A 40 ILTSSVVSLAEDQGISVSMVE 60 (82)
T ss_dssp HHHHHHHHHHHHHTCCEEEES
T ss_pred HHHHHHHHHHHHcCCCEEEEC
Confidence 689999999999999987754
No 8
>2q3l_A Uncharacterized protein; SPOIIAA-like fold, structural genomics, joint center for STR genomics, JCSG, protein structure initiative; HET: MSE; 2.25A {Shewanella loihica pv-4} SCOP: c.13.2.2
Probab=7.58 E-value=5.8e+02 Score=21.55 Aligned_cols=42 Identities=7% Similarity=0.021 Sum_probs=32.1
Q ss_pred EEEEeccCCCCceeeeCCcccCHHHHHHHHHHhhcCCCcCCC
Q 007559 14 VLKIYRLEPSELNIVEDSATYSDFEYLDLLRRVHDGNRSTGG 55 (598)
Q Consensus 14 ~lkidr~~~~~l~i~ed~~~y~~~e~~~ll~~~~~~~~~~g~ 55 (598)
+|.|.+..+..+..++=....|++++.+++..|++.-...+.
T Consensus 10 mi~i~~~~~~~vl~v~~~G~lt~~d~~~l~~~l~~~l~~~~~ 51 (126)
T 2q3l_A 10 AIGIERSQDDFYLAFKAVGKLTHEDYEQMTPLLESALAGIKT 51 (126)
T ss_dssp EEEEEEETTEEEEEEEEEEEECHHHHHHHHHHHHHHTTTCCS
T ss_pred eEEEEEcCCCCEEEEEEEeeECHHHHHHHHHHHHHHHHhCCC
Confidence 788888877777777777889999999988888764444444
No 9
>2l3g_A RHO guanine nucleotide exchange factor 7; structural genomics, northeast structural genomics consortiu PSI-biology, calponin-homology domain; NMR {Homo sapiens}
Probab=7.58 E-value=2e+02 Score=24.94 Aligned_cols=35 Identities=17% Similarity=0.175 Sum_probs=29.1
Q ss_pred eEEeeecCccchhhhHHHHHHHHHHHHHHHHHcCC
Q 007559 447 GVLRTNCIDCLDRTNVAQYAYGVVALGLQLKTLGL 481 (598)
Q Consensus 447 GV~RtNClDCLDRTNv~Q~~i~~~~L~~qL~~lg~ 481 (598)
|+...--.|-.++.|..|-+.+..+|...++.+|+
T Consensus 92 g~~lF~t~DL~e~kn~~~V~~cL~aL~~~~~~~G~ 126 (126)
T 2l3g_A 92 RLETFDANDLYQGQNFNKVLSSLVTLNKVTADIGL 126 (126)
T ss_dssp CCCCCCHHHHHTTSCHHHHHHHHHHHHHHHHHHTC
T ss_pred CCCccCHHHHHhCCCHHHHHHHHHHHHHHHHHccC
Confidence 34445567888999999999999999999998884
No 10
>2lyd_B Pacman protein; DCP1, XRN1, transcription-protein binding complex; NMR {Drosophila melanogaster}
Probab=7.23 E-value=41 Score=22.59 Aligned_cols=7 Identities=86% Similarity=1.868 Sum_probs=4.8
Q ss_pred ceeeeec
Q 007559 267 PLFWSQE 273 (598)
Q Consensus 267 PlfWsQ~ 273 (598)
||||.++
T Consensus 25 plfwq~e 31 (38)
T 2lyd_B 25 PLFWQQE 31 (38)
T ss_dssp CHHHHHH
T ss_pred chHHHHH
Confidence 6777764
Done!