Query 007559
Match_columns 598
No_of_seqs 222 out of 819
Neff 6.8
Searched_HMMs 13730
Date Mon Mar 25 04:48:03 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007559.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/007559hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1va4a_ c.69.1.12 (A:) Arylest 18.7 38 0.0027 28.7 3.7 57 257-318 1-57 (271)
2 d1kk1a3 c.37.1.8 (A:6-200) Ini 14.6 3E+02 0.022 22.5 9.1 73 292-375 117-191 (195)
3 d2bcjq1 a.66.1.1 (Q:67-183) Tr 11.3 1.7E+02 0.012 22.7 5.5 18 489-506 58-75 (117)
4 d1tada1 a.66.1.1 (A:57-177) Tr 10.1 2E+02 0.015 22.3 5.6 43 460-505 15-75 (121)
5 d2cq2a1 d.58.7.1 (A:25-125) Al 9.7 1.6E+02 0.012 22.0 4.7 36 282-318 20-55 (101)
6 d1n82a_ c.1.8.3 (A:) Xylanase 9.4 2.9E+02 0.021 24.8 7.4 21 291-311 106-126 (330)
7 d1ta3b_ c.1.8.3 (B:) Xylanase 8.9 66 0.0048 29.5 2.2 20 292-311 102-121 (301)
8 d1vf6c_ a.194.1.1 (C:) Maguk p 8.3 1.9E+02 0.014 19.0 3.7 30 536-566 6-35 (51)
9 d2adba1 d.58.7.1 (A:177-284) P 8.2 1.1E+02 0.0078 23.2 2.9 38 280-318 5-42 (108)
10 d1cipa1 a.66.1.1 (A:61-181) Tr 7.1 3E+02 0.022 21.1 5.4 19 460-481 15-33 (121)
No 1
>d1va4a_ c.69.1.12 (A:) Arylesterase {Pseudomonas fluorescens [TaxId: 294]}
Probab=18.65 E-value=38 Score=28.71 Aligned_cols=57 Identities=19% Similarity=0.180 Sum_probs=34.9
Q ss_pred EEEEEEecCcceeeeecCCCCCcccceEEcCCCCchHHHHHHHHHHHHhhCCcEEEEecccC
Q 007559 257 SSVVQVRGSIPLFWSQETSWMNIKPDIILSKKDKKYEATRLHFENLAKRYGNPIIVLNLIKT 318 (598)
Q Consensus 257 ~SfVQiRGSVPlfWsQ~~~~l~~kp~I~~~~~d~~~~a~~~HF~~L~~rYG~pi~vvNLl~~ 318 (598)
||||.+.| +.|+|...+. .+|-+.+...-.+...+..-.+.|.++ |-.|+++++-..
T Consensus 1 s~f~~~dG-~~l~y~~~G~---g~~vv~lHG~~~~~~~~~~~~~~l~~~-g~~vi~~D~~G~ 57 (271)
T d1va4a_ 1 STFVAKDG-TQIYFKDWGS---GKPVLFSHGWLLDADMWEYQMEYLSSR-GYRTIAFDRRGF 57 (271)
T ss_dssp CEEECTTS-CEEEEEEESS---SSEEEEECCTTCCGGGGHHHHHHHHTT-TCEEEEECCTTS
T ss_pred CEEEeECC-eEEEEEEEcC---CCeEEEECCCCCCHHHHHHHHHHHHhC-CCEEEEEecccc
Confidence 47888888 9999998773 345444444333333334344445444 445899999764
No 2
>d1kk1a3 c.37.1.8 (A:6-200) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Archaeon Pyrococcus abyssi [TaxId: 29292]}
Probab=14.59 E-value=3e+02 Score=22.47 Aligned_cols=73 Identities=15% Similarity=0.170 Sum_probs=41.9
Q ss_pred hHHHHHHHHHHHHhhCCc--EEEEecccCCCCCcccchHHHHHHHHHHHHhhcCCCCCCeeEEEeeccccccccccHHHH
Q 007559 292 YEATRLHFENLAKRYGNP--IIVLNLIKTNEKKPRETILRAEFSNAIRFINKDLSKENRLKFLSYDLQKHSRKAINALQI 369 (598)
Q Consensus 292 ~~a~~~HF~~L~~rYG~p--i~vvNLl~~~e~k~~E~~L~~~f~~~v~~ln~~lp~~~~i~y~~fD~h~~~Kk~~nv~~~ 369 (598)
.+.+..|+. +.+..|.| |+++|-++..+ +....+.|...-+.+....+ ..+.++.. .++++.|+..+
T Consensus 117 ~~~t~e~~~-~~~~~~~~~iiv~inK~D~~d----~~~~~~~~~~~~~~~~~~~~--~~~~iIpi----SA~~G~ni~~L 185 (195)
T d1kk1a3 117 RPQTREHLM-ALQIIGQKNIIIAQNKIELVD----KEKALENYRQIKEFIEGTVA--ENAPIIPI----SALHGANIDVL 185 (195)
T ss_dssp CHHHHHHHH-HHHHHTCCCEEEEEECGGGSC----HHHHHHHHHHHHHHHTTSTT--TTCCEEEC----BTTTTBSHHHH
T ss_pred hhhhHHHHH-HHHHhcCccceeeeecccchh----hHHHHHHHHHHHHHhccccC--CCCeEEEE----ECCCCCCHHHH
Confidence 345677875 56666765 55688887543 33344555555555544332 23555542 23477888777
Q ss_pred HHHHHH
Q 007559 370 LGRAGA 375 (598)
Q Consensus 370 l~~ia~ 375 (598)
++.+.+
T Consensus 186 l~~I~~ 191 (195)
T d1kk1a3 186 VKAIED 191 (195)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 776644
No 3
>d2bcjq1 a.66.1.1 (Q:67-183) Transducin (alpha subunit), insertion domain {Mouse (Mus musculus) [TaxId: 10090]}
Probab=11.30 E-value=1.7e+02 Score=22.69 Aligned_cols=18 Identities=17% Similarity=0.490 Sum_probs=12.7
Q ss_pred CCchHHHHHHHHHHHhhh
Q 007559 489 LDNPLAKDLMGIYETMGD 506 (598)
Q Consensus 489 ~~~~~~~~l~~lw~~~GD 506 (598)
+..+++..++.+|.|.|=
T Consensus 58 ~~~~~~~~i~~LW~D~~i 75 (117)
T d2bcjq1 58 FENPYVDAIKSLWNDPGI 75 (117)
T ss_dssp CCHHHHHHHHHHHHSHHH
T ss_pred cCHHHHHHHHHHHcCHHH
Confidence 456677888888876553
No 4
>d1tada1 a.66.1.1 (A:57-177) Transducin (alpha subunit), insertion domain {Cow (Bos taurus) [TaxId: 9913]}
Probab=10.11 E-value=2e+02 Score=22.33 Aligned_cols=43 Identities=14% Similarity=0.195 Sum_probs=24.1
Q ss_pred hhHHHHHHHHHHHHHHHHHcCCCCC-C-----------------CCCCCchHHHHHHHHHHHhh
Q 007559 460 TNVAQYAYGVVALGLQLKTLGLLKS-P-----------------NIGLDNPLAKDLMGIYETMG 505 (598)
Q Consensus 460 TNv~Q~~i~~~~L~~qL~~lg~~~~-~-----------------~~~~~~~~~~~l~~lw~~~G 505 (598)
.|++|.+ .+|-.....||+-.. + ...+..+++..++.+|.|.|
T Consensus 15 ~Nii~~m---~~li~a~~~l~i~~~~~~~~~~~~~i~~~~~~~~~~~~~~e~~~~i~~LW~D~~ 75 (121)
T d1tada1 15 GNTLQSI---LAIVRAMTTLNIQYGDSARQDDARKLMHMADTIEEGTMPKEMSDIIQRLWKDSG 75 (121)
T ss_dssp HHHHHHH---HHHHHHHHHTTCCCSSTTHHHHHHHHHHHHHHSCTTCCCHHHHHHHHHHHHCHH
T ss_pred HHHHHHH---HHHHHHHHHcCCCCCCchHHHHHHHHHHhhccccCCCCCHHHHHHHHHHhCCHH
Confidence 4677654 345556677876432 1 11233455666777777665
No 5
>d2cq2a1 d.58.7.1 (A:25-125) Alkylation repair AlkB homolog 8, ALKBH8 {Human (Homo sapiens) [TaxId: 9606]}
Probab=9.70 E-value=1.6e+02 Score=22.00 Aligned_cols=36 Identities=8% Similarity=0.137 Sum_probs=22.9
Q ss_pred ceEEcCCCCchHHHHHHHHHHHHhhCCcEEEEecccC
Q 007559 282 DIILSKKDKKYEATRLHFENLAKRYGNPIIVLNLIKT 318 (598)
Q Consensus 282 ~I~~~~~d~~~~a~~~HF~~L~~rYG~pi~vvNLl~~ 318 (598)
.+.+.........+...+.+++++||. |.-+.+++.
T Consensus 20 ~l~V~ng~L~~~vte~~L~~~F~~~G~-i~~i~~~~~ 55 (101)
T d2cq2a1 20 SLVVANGGLGNGVSRNQLLPVLEKCGL-VDALLMPPN 55 (101)
T ss_dssp EEEEETCTGGGTCCHHHHHHHHHHHSC-EEEEECCTT
T ss_pred eEEEECCCCCCCCCHHHHHHHHHhhCc-ccEEeeccC
Confidence 344433223344556777888889996 777787764
No 6
>d1n82a_ c.1.8.3 (A:) Xylanase {Bacillus stearothermophilus, Ixt6 [TaxId: 1422]}
Probab=9.41 E-value=2.9e+02 Score=24.82 Aligned_cols=21 Identities=24% Similarity=0.450 Sum_probs=17.1
Q ss_pred chHHHHHHHHHHHHhhCCcEE
Q 007559 291 KYEATRLHFENLAKRYGNPII 311 (598)
Q Consensus 291 ~~~a~~~HF~~L~~rYG~pi~ 311 (598)
-..++.+|...+.+||+..|.
T Consensus 106 ~~~~~~~~i~~v~~ry~g~v~ 126 (330)
T d1n82a_ 106 LLERMKCHISTVVRRYKGKIY 126 (330)
T ss_dssp HHHHHHHHHHHHHHHHTTTCC
T ss_pred HHHHHHHHHHHHHHhcCCCce
Confidence 456788999999999987664
No 7
>d1ta3b_ c.1.8.3 (B:) Xylanase A, catalytic core {Emericella nidulans (Aspergillus nidulans) [TaxId: 162425]}
Probab=8.89 E-value=66 Score=29.54 Aligned_cols=20 Identities=20% Similarity=0.368 Sum_probs=16.5
Q ss_pred hHHHHHHHHHHHHhhCCcEE
Q 007559 292 YEATRLHFENLAKRYGNPII 311 (598)
Q Consensus 292 ~~a~~~HF~~L~~rYG~pi~ 311 (598)
...+.+|+..+..||+..|.
T Consensus 102 ~~~~~~~I~~v~~rY~g~i~ 121 (301)
T d1ta3b_ 102 RSVMTNHINEVVGRYKGKIM 121 (301)
T ss_dssp HHHHHHHHHHHHHHTTTSCS
T ss_pred HHHHHHHHHHHHHhcCCCcc
Confidence 45688999999999976664
No 8
>d1vf6c_ a.194.1.1 (C:) Maguk p55 subfamily member 5, Patj {Mouse (Mus musculus) [TaxId: 10090]}
Probab=8.26 E-value=1.9e+02 Score=19.04 Aligned_cols=30 Identities=23% Similarity=0.450 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHhhccCChhhHHHHHHHhcCc
Q 007559 536 QEFLRTLQRYYSNTYVDAEKQNAINVFLGHF 566 (598)
Q Consensus 536 ~D~~~S~~Ryy~N~F~D~~kQ~aInLfLG~~ 566 (598)
.|++.|++ -...+..|..-|+-|.|+|...
T Consensus 6 edl~~slK-~iqh~LvDsQSQeDi~l~lqLv 35 (51)
T d1vf6c_ 6 EDLFSSLK-HIQHTLVDSQSQEDISLLLQLV 35 (51)
T ss_dssp HHHHHHHH-HHHTTCCSHHHHHHHHHHHHHH
T ss_pred HHHHHHHH-HHHHhhcccchHHHHHHHHHHH
Confidence 57777776 4678999999999999998644
No 9
>d2adba1 d.58.7.1 (A:177-284) Polypyrimidine tract-binding protein {Human (Homo sapiens) [TaxId: 9606]}
Probab=8.20 E-value=1.1e+02 Score=23.24 Aligned_cols=38 Identities=11% Similarity=0.238 Sum_probs=25.0
Q ss_pred ccceEEcCCCCchHHHHHHHHHHHHhhCCcEEEEecccC
Q 007559 280 KPDIILSKKDKKYEATRLHFENLAKRYGNPIIVLNLIKT 318 (598)
Q Consensus 280 kp~I~~~~~d~~~~a~~~HF~~L~~rYG~pi~vvNLl~~ 318 (598)
.|...+--.+..+..+.....+++..||. |.-+.++..
T Consensus 5 s~~~~v~V~NL~~~vte~~L~~~F~~~G~-i~~~~i~~~ 42 (108)
T d2adba1 5 SPVLRIIVENLFYPVTLDVLHQIFSKFGT-VLKIITFTK 42 (108)
T ss_dssp CCEEEEESCSCCSTTHHHHHHHHHTTTSC-EEEEEEEEE
T ss_pred CCeEEEEEeCcCCCCCHHHHHHHHccCCc-EEEEEEEee
Confidence 44444433344566777888899999997 665666644
No 10
>d1cipa1 a.66.1.1 (A:61-181) Transducin (alpha subunit), insertion domain {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=7.14 E-value=3e+02 Score=21.14 Aligned_cols=19 Identities=21% Similarity=0.232 Sum_probs=10.6
Q ss_pred hhHHHHHHHHHHHHHHHHHcCC
Q 007559 460 TNVAQYAYGVVALGLQLKTLGL 481 (598)
Q Consensus 460 TNv~Q~~i~~~~L~~qL~~lg~ 481 (598)
.|+++.+ .+|-..+..+|+
T Consensus 15 ~Ni~~~~---~~ll~a~~~l~i 33 (121)
T d1cipa1 15 SNTIQSI---IAIIRAMGRLKI 33 (121)
T ss_dssp HHHHHHH---HHHHHHHHHHTC
T ss_pred HHHHHHH---HHHHHHHHHhCC
Confidence 3666644 344455666676
Done!