BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 007562
         (598 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2YK7|A Chain A, Structure Of Neisseria Los-Specific Sialyltransferase
           (Nst), In Complex With Cmp-3f-Neu5ac
          Length = 326

 Score = 30.8 bits (68), Expect = 2.5,   Method: Compositional matrix adjust.
 Identities = 13/42 (30%), Positives = 22/42 (52%)

Query: 127 VYQFKFFAELVKEQVGERDSVIIMTHEPNWLLDWYFNNVSGK 168
           + Q K    ++ +  GER  V++M+   N   D+YFN +  K
Sbjct: 10  ILQMKVAERIMAQHPGERFYVVLMSENNNEKYDYYFNQIKDK 51


>pdb|2YK6|A Chain A, Structure Of Neisseria Los-Specific Sialyltransferase
           (Nst), In Complex With Cdp
          Length = 326

 Score = 30.4 bits (67), Expect = 2.6,   Method: Compositional matrix adjust.
 Identities = 13/42 (30%), Positives = 22/42 (52%)

Query: 127 VYQFKFFAELVKEQVGERDSVIIMTHEPNWLLDWYFNNVSGK 168
           + Q K    ++ +  GER  V++M+   N   D+YFN +  K
Sbjct: 10  ILQMKVAERIMAQHPGERFYVVLMSENRNEKYDYYFNQIKDK 51


>pdb|1MPA|H Chain H, Bactericidal Antibody Against Neisseria Meningitidis
 pdb|1MNU|H Chain H, Unliganded Bactericidal Antibody Against Neisseria
           Meningitidis
 pdb|2MPA|H Chain H, Bactericidal Antibody Against Neisseria Meningitidis
          Length = 225

 Score = 28.9 bits (63), Expect = 7.5,   Method: Compositional matrix adjust.
 Identities = 17/57 (29%), Positives = 29/57 (50%), Gaps = 3/57 (5%)

Query: 413 QWTFGLYPAC--IKYLMSAFDIPEVMAVTRSNICKNGMQSLSRGGAVIYYASVFLYF 467
           +W  G+YP     +Y     D  ++ AVT +N     + SL+   + +YY S+ +YF
Sbjct: 46  EWIGGIYPGNRDTRYTQRFKDKAKLTAVTSANTAYMELSSLTNEDSAVYYCSI-IYF 101


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.326    0.141    0.472 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 19,283,634
Number of Sequences: 62578
Number of extensions: 840853
Number of successful extensions: 1906
Number of sequences better than 100.0: 7
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 1904
Number of HSP's gapped (non-prelim): 7
length of query: 598
length of database: 14,973,337
effective HSP length: 104
effective length of query: 494
effective length of database: 8,465,225
effective search space: 4181821150
effective search space used: 4181821150
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 54 (25.4 bits)