Query 007562
Match_columns 598
No_of_seqs 170 out of 217
Neff 4.8
Searched_HMMs 46136
Date Thu Mar 28 12:18:08 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007562.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/007562hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd07378 MPP_ACP5 Homo sapiens 99.8 4E-19 8.7E-24 178.9 13.5 184 4-223 35-238 (277)
2 cd00839 MPP_PAPs purple acid p 99.8 5.5E-19 1.2E-23 179.1 13.5 189 4-222 36-243 (294)
3 PLN02533 probable purple acid 99.7 1.4E-16 2.9E-21 172.9 15.2 149 63-219 199-361 (427)
4 cd07402 MPP_GpdQ Enterobacter 99.6 8.5E-15 1.8E-19 144.0 14.0 137 62-218 70-212 (240)
5 cd07396 MPP_Nbla03831 Homo sap 99.6 1.7E-14 3.6E-19 146.5 16.6 140 62-219 73-247 (267)
6 cd07395 MPP_CSTP1 Homo sapiens 99.6 1.9E-14 4.2E-19 144.6 15.7 174 4-219 52-237 (262)
7 PRK11148 cyclic 3',5'-adenosin 99.5 2.2E-13 4.7E-18 138.8 14.6 136 61-218 84-225 (275)
8 PTZ00422 glideosome-associated 99.5 2.5E-13 5.4E-18 146.0 14.0 182 4-220 60-280 (394)
9 cd07401 MPP_TMEM62_N Homo sapi 99.4 1.3E-12 2.8E-17 132.5 13.1 130 63-203 77-220 (256)
10 KOG1378 Purple acid phosphatas 99.4 4.3E-12 9.3E-17 137.6 15.6 184 4-225 177-389 (452)
11 cd00842 MPP_ASMase acid sphing 99.4 6E-12 1.3E-16 128.9 14.0 160 4-194 71-262 (296)
12 cd07399 MPP_YvnB Bacillus subt 99.3 3.2E-11 6.9E-16 119.3 12.6 72 125-198 89-166 (214)
13 PF00149 Metallophos: Calcineu 99.2 2.2E-11 4.8E-16 106.1 4.8 159 5-193 35-200 (200)
14 cd08163 MPP_Cdc1 Saccharomyces 99.2 2.8E-10 6E-15 116.3 13.5 118 65-197 86-232 (257)
15 COG1409 Icc Predicted phosphoh 99.1 5.6E-10 1.2E-14 111.1 13.4 147 5-193 37-193 (301)
16 cd07393 MPP_DR1119 Deinococcus 99.1 5.2E-10 1.1E-14 111.8 11.9 119 62-197 71-209 (232)
17 cd07392 MPP_PAE1087 Pyrobaculu 99.0 3.4E-09 7.5E-14 99.6 13.0 113 62-194 52-174 (188)
18 cd07383 MPP_Dcr2 Saccharomyces 99.0 1.5E-09 3.2E-14 105.3 9.5 75 121-195 88-178 (199)
19 TIGR03767 P_acnes_RR metalloph 98.9 9.8E-09 2.1E-13 113.0 12.4 126 99-227 289-428 (496)
20 TIGR03729 acc_ester putative p 98.9 5.1E-09 1.1E-13 104.7 8.5 67 126-194 148-222 (239)
21 PRK11340 phosphodiesterase Yae 98.8 2.7E-08 5.8E-13 101.9 12.7 132 63-228 113-262 (271)
22 cd07385 MPP_YkuE_C Bacillus su 98.8 2.9E-08 6.2E-13 96.8 9.8 137 63-228 64-215 (223)
23 KOG2679 Purple (tartrate-resis 98.8 1.6E-08 3.4E-13 104.0 7.5 184 5-227 79-284 (336)
24 cd07400 MPP_YydB Bacillus subt 98.6 1.1E-07 2.3E-12 87.0 8.6 50 148-198 81-130 (144)
25 cd07388 MPP_Tt1561 Thermus the 98.6 4.4E-07 9.5E-12 91.5 12.5 144 5-192 35-190 (224)
26 COG1408 Predicted phosphohydro 98.5 3.8E-07 8.3E-12 94.9 9.8 144 66-228 108-273 (284)
27 cd07404 MPP_MS158 Microscilla 98.5 8.5E-07 1.8E-11 83.4 9.7 52 145-196 97-152 (166)
28 cd00840 MPP_Mre11_N Mre11 nucl 98.3 4.6E-06 1E-10 80.7 9.6 122 65-196 78-204 (223)
29 cd07379 MPP_239FB Homo sapiens 98.1 6.9E-06 1.5E-10 75.1 7.0 51 144-194 67-117 (135)
30 cd00838 MPP_superfamily metall 98.1 9E-06 2E-10 70.1 6.4 51 148-198 70-120 (131)
31 TIGR03768 RPA4764 metallophosp 98.0 2.7E-05 5.8E-10 85.9 9.6 91 100-191 291-409 (492)
32 cd08166 MPP_Cdc1_like_1 unchar 97.6 0.00017 3.7E-09 71.7 8.2 43 148-200 112-154 (195)
33 cd07384 MPP_Cdc1_like Saccharo 97.6 0.00021 4.6E-09 68.9 8.0 35 148-200 119-153 (171)
34 cd08164 MPP_Ted1 Saccharomyces 97.5 0.00025 5.3E-09 70.5 6.8 32 148-197 129-160 (193)
35 cd07397 MPP_DevT Myxococcus xa 97.4 0.0011 2.4E-08 67.9 10.3 58 140-197 142-212 (238)
36 cd07406 MPP_CG11883_N Drosophi 96.9 0.013 2.8E-07 59.8 12.4 132 66-221 73-228 (257)
37 COG1768 Predicted phosphohydro 96.8 0.0094 2E-07 59.1 10.3 121 58-196 69-202 (230)
38 PF12850 Metallophos_2: Calcin 96.8 0.00051 1.1E-08 62.7 1.5 61 143-218 79-139 (156)
39 cd08165 MPP_MPPE1 human MPPE1 96.6 0.0021 4.6E-08 61.1 4.5 32 148-197 107-138 (156)
40 cd00841 MPP_YfcE Escherichia c 96.5 0.0048 1E-07 57.2 5.7 42 145-195 75-116 (155)
41 PF09423 PhoD: PhoD-like phosp 96.4 0.028 6.2E-07 61.8 12.0 93 99-193 251-377 (453)
42 cd00845 MPP_UshA_N_like Escher 96.4 0.053 1.2E-06 54.3 12.9 117 66-196 72-209 (252)
43 KOG3770 Acid sphingomyelinase 96.3 0.017 3.7E-07 65.5 9.6 128 64-197 251-409 (577)
44 cd07403 MPP_TTHA0053 Thermus t 96.2 0.013 2.7E-07 54.0 6.8 51 146-197 57-107 (129)
45 TIGR01854 lipid_A_lpxH UDP-2,3 96.1 0.044 9.6E-07 55.0 10.7 19 179-197 183-201 (231)
46 cd07411 MPP_SoxB_N Thermus the 95.9 0.16 3.4E-06 52.1 13.6 109 70-193 89-219 (264)
47 PF14582 Metallophos_3: Metall 95.8 0.047 1E-06 56.0 9.2 118 63-192 89-217 (255)
48 cd07410 MPP_CpdB_N Escherichia 95.4 0.24 5.2E-06 50.9 12.8 122 67-194 86-231 (277)
49 TIGR00040 yfcE phosphoesterase 95.3 0.026 5.6E-07 53.0 4.9 15 179-193 104-118 (158)
50 cd07409 MPP_CD73_N CD73 ecto-5 94.7 0.41 9E-06 49.6 12.3 114 67-194 85-219 (281)
51 PHA02546 47 endonuclease subun 94.1 0.3 6.5E-06 52.2 10.0 13 64-76 77-89 (340)
52 PRK05340 UDP-2,3-diacylglucosa 93.5 0.87 1.9E-05 45.9 11.6 19 178-196 184-202 (241)
53 cd07394 MPP_Vps29 Homo sapiens 93.1 0.17 3.7E-06 49.3 5.6 15 179-193 104-118 (178)
54 cd07407 MPP_YHR202W_N Saccharo 92.8 1.5 3.3E-05 45.9 12.5 85 101-193 136-231 (282)
55 cd07389 MPP_PhoD Bacillus subt 92.7 0.76 1.6E-05 45.4 9.7 25 98-122 144-168 (228)
56 cd07408 MPP_SA0022_N Staphyloc 92.7 2 4.3E-05 43.9 12.9 118 68-195 74-215 (257)
57 TIGR00619 sbcd exonuclease Sbc 91.4 0.48 1E-05 48.6 6.7 16 65-80 77-92 (253)
58 cd07405 MPP_UshA_N Escherichia 90.4 2.9 6.4E-05 43.6 11.5 125 67-194 78-222 (285)
59 COG2129 Predicted phosphoester 90.2 2.5 5.5E-05 43.4 10.4 63 130-197 125-191 (226)
60 cd00844 MPP_Dbr1_N Dbr1 RNA la 89.6 3.7 8.1E-05 42.7 11.5 50 144-196 164-232 (262)
61 KOG1432 Predicted DNA repair e 89.5 3.6 7.9E-05 44.8 11.4 68 124-192 225-310 (379)
62 cd07382 MPP_DR1281 Deinococcus 89.3 3.9 8.5E-05 42.5 11.3 116 63-193 58-178 (255)
63 cd07412 MPP_YhcR_N Bacillus su 88.9 12 0.00026 39.1 14.6 52 143-195 191-243 (288)
64 PRK10966 exonuclease subunit S 88.6 0.38 8.2E-06 53.0 3.5 24 62-86 74-97 (407)
65 PRK09558 ushA bifunctional UDP 88.4 4.8 0.0001 45.8 12.2 51 142-194 208-258 (551)
66 COG0420 SbcD DNA repair exonuc 87.8 1.2 2.5E-05 48.2 6.6 18 182-199 202-219 (390)
67 cd07381 MPP_CapA CapA and rela 87.6 12 0.00027 37.5 13.4 131 63-198 77-224 (239)
68 COG0737 UshA 5'-nucleotidase/2 85.7 12 0.00026 42.3 13.3 121 67-193 106-247 (517)
69 cd07390 MPP_AQ1575 Aquifex aeo 84.4 0.66 1.4E-05 44.3 2.3 36 143-196 105-140 (168)
70 PRK09419 bifunctional 2',3'-cy 84.3 6.2 0.00014 49.1 11.1 47 142-194 837-883 (1163)
71 cd08162 MPP_PhoA_N Synechococc 84.3 13 0.00027 39.7 12.0 39 143-194 207-245 (313)
72 TIGR00583 mre11 DNA repair pro 83.4 4.3 9.3E-05 45.0 8.4 42 144-194 200-241 (405)
73 cd07391 MPP_PF1019 Pyrococcus 83.4 0.96 2.1E-05 43.3 3.0 13 64-76 76-88 (172)
74 COG2908 Uncharacterized protei 82.1 2.2 4.8E-05 44.1 5.1 22 175-196 181-202 (237)
75 smart00854 PGA_cap Bacterial c 81.9 29 0.00062 35.1 13.0 131 64-199 74-223 (239)
76 TIGR01530 nadN NAD pyrophospha 80.1 16 0.00036 41.8 11.7 112 66-194 84-219 (550)
77 cd07386 MPP_DNA_pol_II_small_a 76.6 1.7 3.7E-05 43.8 2.4 36 180-225 190-225 (243)
78 PRK09453 phosphodiesterase; Pr 75.3 1.9 4.2E-05 41.5 2.2 13 180-192 117-129 (182)
79 PRK04036 DNA polymerase II sma 66.0 3.1 6.7E-05 47.2 1.6 13 65-77 332-344 (504)
80 COG4186 Predicted phosphoester 65.2 10 0.00022 37.5 4.7 44 141-192 104-147 (186)
81 PF09587 PGA_cap: Bacterial ca 64.7 1.3E+02 0.0028 30.6 12.8 132 63-199 75-234 (250)
82 KOG3662 Cell division control 62.7 12 0.00026 41.8 5.2 48 5-78 97-146 (410)
83 TIGR01390 CycNucDiestase 2',3' 58.7 63 0.0014 37.8 10.5 45 144-193 196-240 (626)
84 TIGR00282 metallophosphoestera 51.3 1.4E+02 0.0031 31.4 10.7 51 130-192 130-180 (266)
85 PRK09419 bifunctional 2',3'-cy 50.6 69 0.0015 40.2 9.6 48 143-195 234-282 (1163)
86 KOG4419 5' nucleotidase [Nucle 48.4 51 0.0011 38.4 7.3 126 58-196 120-274 (602)
87 COG1311 HYS2 Archaeal DNA poly 48.1 9 0.0002 43.3 1.4 44 12-76 278-321 (481)
88 PHA02239 putative protein phos 47.2 13 0.00028 38.1 2.3 12 64-75 61-72 (235)
89 PF07819 PGAP1: PGAP1-like pro 46.5 68 0.0015 32.4 7.3 80 62-153 3-93 (225)
90 cd07387 MPP_PolD2_C PolD2 (DNA 45.6 76 0.0016 33.3 7.6 74 62-138 93-175 (257)
91 TIGR00024 SbcD_rel_arch putati 43.9 21 0.00045 36.4 3.1 17 181-197 134-150 (225)
92 PRK11907 bifunctional 2',3'-cy 42.8 1.6E+02 0.0034 36.0 10.5 22 67-88 204-225 (814)
93 PF10230 DUF2305: Uncharacteri 42.8 45 0.00097 34.5 5.4 21 64-88 3-23 (266)
94 PRK09420 cpdB bifunctional 2', 42.3 1.8E+02 0.004 34.3 10.8 45 144-193 219-263 (649)
95 cd07424 MPP_PrpA_PrpB PrpA and 40.2 23 0.0005 34.8 2.8 12 182-193 169-180 (207)
96 PRK09418 bifunctional 2',3'-cy 39.2 1.4E+02 0.0031 36.1 9.4 46 144-194 245-290 (780)
97 COG2843 PgsA Putative enzyme o 38.5 89 0.0019 34.6 7.1 70 139-221 219-289 (372)
98 cd07425 MPP_Shelphs Shewanella 38.3 28 0.0006 34.8 3.0 16 179-194 165-180 (208)
99 cd07380 MPP_CWF19_N Schizosacc 37.7 29 0.00062 33.4 2.8 48 145-195 69-125 (150)
100 cd07398 MPP_YbbF-LpxH Escheric 32.2 25 0.00054 34.1 1.5 19 179-197 187-205 (217)
101 PF00954 S_locus_glycop: S-loc 27.8 65 0.0014 28.7 3.3 45 490-536 27-71 (110)
102 KOG3724 Negative regulator of 26.9 1.5E+02 0.0031 36.3 6.6 85 59-153 85-190 (973)
103 PF10755 DUF2585: Protein of u 26.6 2.7E+02 0.0059 27.6 7.4 18 269-286 41-58 (165)
104 cd03231 ABC_CcmA_heme_exporter 26.5 1.3E+02 0.0028 29.3 5.4 41 114-155 146-186 (201)
105 cd07390 MPP_AQ1575 Aquifex aeo 26.4 65 0.0014 30.7 3.3 16 61-77 68-83 (168)
106 COG4133 CcmA ABC-type transpor 23.4 1.4E+02 0.003 30.7 4.9 43 115-158 152-194 (209)
107 cd03232 ABC_PDR_domain2 The pl 23.0 1.7E+02 0.0036 28.3 5.4 40 114-154 129-168 (192)
108 PRK13540 cytochrome c biogenes 22.4 1.7E+02 0.0037 28.4 5.4 45 114-159 148-192 (200)
109 PRK09968 serine/threonine-spec 21.9 47 0.001 33.3 1.4 12 181-192 179-190 (218)
110 TIGR01166 cbiO cobalt transpor 21.8 1.7E+02 0.0037 28.0 5.2 40 114-154 148-187 (190)
111 TIGR02673 FtsE cell division A 21.7 1.5E+02 0.0033 28.8 4.9 30 125-154 168-197 (214)
112 cd00144 MPP_PPP_family phospho 21.4 75 0.0016 31.0 2.7 12 65-76 57-68 (225)
113 TIGR01189 ccmA heme ABC export 21.4 1.9E+02 0.0042 27.9 5.5 40 114-154 148-187 (198)
114 COG3545 Predicted esterase of 21.2 1.3E+02 0.0028 30.3 4.2 65 64-153 3-67 (181)
115 PRK13538 cytochrome c biogenes 20.4 1.8E+02 0.0039 28.3 5.1 44 114-158 150-193 (204)
116 COG3540 PhoD Phosphodiesterase 20.2 3E+02 0.0064 31.9 7.1 63 125-191 337-416 (522)
No 1
>cd07378 MPP_ACP5 Homo sapiens acid phosphatase 5 and related proteins, metallophosphatase domain. Acid phosphatase 5 (ACP5) removes the mannose 6-phosphate recognition marker from lysosomal proteins. The exact site of dephosphorylation is not clear. Evidence suggests dephosphorylation may take place in a prelysosomal compartment as well as in the lysosome. ACP5 belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site ma
Probab=99.80 E-value=4e-19 Score=178.94 Aligned_cols=184 Identities=15% Similarity=0.157 Sum_probs=125.8
Q ss_pred eeeeeceeeecCCChhhHHhhhcchhhhhcCCCCCCCCCccccCCCCCCCCCcccccCCCCeEEecCCCCCCCCChHHHH
Q 007562 4 LRFVWIHCRYPNPSAFTYERRLFRPFEYALQPPPWYKKDHVAVNKPEVPSGVPELKQYDGPQCYIIPGNHDWFDGLNTFM 83 (598)
Q Consensus 4 ~~~~~gDlvYp~~s~~~Y~~rf~~Py~~Al~~~~~~~~~~i~~~~p~~p~~~~~~~~~~~p~~~~~~gnhd~~~gL~aF~ 83 (598)
|-+++||++|..+....+..++.+-|+..+.. + ..+.| +++||||||+..+..++.
T Consensus 35 fvv~~GD~~y~~g~~~~~~~~~~~~~~~~~~~----------------------~-~~~~P-~~~v~GNHD~~~~~~~~~ 90 (277)
T cd07378 35 FILSLGDNFYDDGVGSVDDPRFETTFEDVYSA----------------------P-SLQVP-WYLVLGNHDYSGNVSAQI 90 (277)
T ss_pred EEEeCCCccccCCCCCCcchHHHHHHHHHccc----------------------h-hhcCC-eEEecCCcccCCCchhee
Confidence 45799999999998777777777777765421 1 13456 999999999987644332
Q ss_pred HhhcccCCCCcccCCCCCceEEEECCC-----cEEEEEeecccC---------------CCCCHHHHHHHHHHHHhhcCC
Q 007562 84 RFICHKSWLGGWFMPQKKSYFALQLPK-----GWWVFGLDLALH---------------CDIDVYQFKFFAELVKEQVGE 143 (598)
Q Consensus 84 r~F~~~~~l~gw~~~Q~~sYfAl~Lp~-----~wwLiGLDsql~---------------g~id~~Q~~wf~~~l~~~~~~ 143 (598)
.+.-. .....|. .+..||+.+.+. ++++|+||++.. +.+...|++||++.|++ .+
T Consensus 91 ~~~~~-~~~~~~~--~~~~~y~~~~~~~~~~~~~~~i~LDt~~~~~~~~~~~~~~~~~~~~~~~~Q~~wL~~~L~~--~~ 165 (277)
T cd07378 91 DYTKR-PNSPRWT--MPAYYYRVSFPFPSSDTTVEFIMIDTVPLCGNSDDIASPYGPPNGKLAEEQLAWLEKTLAA--ST 165 (277)
T ss_pred ehhcc-CCCCCcc--CcchheEEEeecCCCCCEEEEEEEeChhHcCccccccccccCcchhhHHHHHHHHHHHHHh--cC
Confidence 22110 0122233 355788998873 699999999853 23457999999999975 33
Q ss_pred CCeEEEEecCCCccccccccCCCccchHHHHHhhhCCceeEEEcCccCCCcceeecCCCCCcccceEEEecCCCcccccc
Q 007562 144 RDSVIIMTHEPNWLLDWYFNNVSGKNVKHLICDYLKGRCKLRIAGDMHHYMRHSYVPSDGPVYVQHLLVNGCGGAFLHPT 223 (598)
Q Consensus 144 ~~~VIL~tHeP~w~~~~~~~~~~~~~v~~Li~~~l~~rV~L~LSGH~HhY~R~~~~~~~g~~~~~~lIVsGGGGAfLhpt 223 (598)
++.+|+++|+|.+..+....+ ....+.+++.+.+++|+++|+||+|.++++.... ...++||+|+||+.....
T Consensus 166 ~~~~iv~~H~P~~~~~~~~~~--~~~~~~l~~l~~~~~v~~vl~GH~H~~~~~~~~~-----~~~~~i~~G~~~~~~~~~ 238 (277)
T cd07378 166 ADWKIVVGHHPIYSSGEHGPT--SCLVDRLLPLLKKYKVDAYLSGHDHNLQHIKDDG-----SGTSFVVSGAGSKARPSV 238 (277)
T ss_pred CCeEEEEeCccceeCCCCCCc--HHHHHHHHHHHHHcCCCEEEeCCcccceeeecCC-----CCcEEEEeCCCcccCCCC
Confidence 479999999999976543221 1122234344446789999999999999887542 135789999888754433
No 2
>cd00839 MPP_PAPs purple acid phosphatases of the metallophosphatase superfamily, metallophosphatase domain. Purple acid phosphatases (PAPs) belong to a diverse family of binuclear metallohydrolases that have been identified and characterized in plants, animals, and fungi. PAPs contain a binuclear metal center and their characteristic pink or purple color derives from a charge-transfer transition between a tyrosine residue and a chromophoric ferric ion within the binuclear center. PAPs catalyze the hydrolysis of a wide range of activated phosphoric acid mono- and di-esters and anhydrides. PAPs are distinguished from the other phosphatases by their insensitivity to L-(+) tartrate inhibition and are therefore also known as tartrate resistant acid phosphatases (TRAPs). While only a few copies of PAP-like genes are present in mammalian and fungal genomes, multiple copies are present in plant genomes. PAPs belong to the metallophosphatase (MPP) superfamily. MPPs are functionally diver
Probab=99.79 E-value=5.5e-19 Score=179.13 Aligned_cols=189 Identities=14% Similarity=0.132 Sum_probs=121.0
Q ss_pred eeeeeceeeecCCCh--hhHHhhhcchhhhhcCCCCCCCCCccccCCCCCCCCCcccccCCCCeEEecCCCCCCCCChHH
Q 007562 4 LRFVWIHCRYPNPSA--FTYERRLFRPFEYALQPPPWYKKDHVAVNKPEVPSGVPELKQYDGPQCYIIPGNHDWFDGLNT 81 (598)
Q Consensus 4 ~~~~~gDlvYp~~s~--~~Y~~rf~~Py~~Al~~~~~~~~~~i~~~~p~~p~~~~~~~~~~~p~~~~~~gnhd~~~gL~a 81 (598)
+-+|+||++|-.+.. +.|+ +|++..+... ...| ++++|||||.......
T Consensus 36 ~vl~~GDl~~~~~~~~~~~~~-~~~~~~~~~~---------------------------~~~P-~~~~~GNHD~~~~~~~ 86 (294)
T cd00839 36 AILHVGDLAYADGYNNGSRWD-TFMRQIEPLA---------------------------SYVP-YMVTPGNHEADYNFSF 86 (294)
T ss_pred EEEEcCchhhhcCCccchhHH-HHHHHHHHHH---------------------------hcCC-cEEcCcccccccCCCC
Confidence 457999999988775 4443 3444333211 1235 9999999998755322
Q ss_pred HHH-hhcccC-CCCcccCCCCCceEEEECCCcEEEEEeecccCC---CCCHHHHHHHHHHHHhhcCCC-CeEEEEecCCC
Q 007562 82 FMR-FICHKS-WLGGWFMPQKKSYFALQLPKGWWVFGLDLALHC---DIDVYQFKFFAELVKEQVGER-DSVIIMTHEPN 155 (598)
Q Consensus 82 F~r-~F~~~~-~l~gw~~~Q~~sYfAl~Lp~~wwLiGLDsql~g---~id~~Q~~wf~~~l~~~~~~~-~~VIL~tHeP~ 155 (598)
... .+..+. ....-....+..||+.+.++ +.+++||+.... .+..+|++||++.|++.-+.+ ..+|++.|+|.
T Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~Ysf~~g~-v~fi~Lds~~~~~~~~~~~~q~~WL~~~L~~~~~~~~~~~iv~~H~P~ 165 (294)
T cd00839 87 YKIKAFFPRFRFPHSPSGSTSNLWYSFDVGP-VHFVSLSTEVDFYGDGPGSPQYDWLEADLAKVDRSKTPWIIVMGHRPM 165 (294)
T ss_pred cccccccccccccCCCCCCCCCceEEEeeCC-EEEEEEecccccccCCCCcHHHHHHHHHHHHhcccCCCeEEEEeccCc
Confidence 111 100000 01111123456789999996 999999997654 678899999999997533323 45999999999
Q ss_pred ccccccccCC--CccchHHHHHhhhCCceeEEEcCccCCCcceeecCCC---------CCcccceEEEecCCCccccc
Q 007562 156 WLLDWYFNNV--SGKNVKHLICDYLKGRCKLRIAGDMHHYMRHSYVPSD---------GPVYVQHLLVNGCGGAFLHP 222 (598)
Q Consensus 156 w~~~~~~~~~--~~~~v~~Li~~~l~~rV~L~LSGH~HhY~R~~~~~~~---------g~~~~~~lIVsGGGGAfLhp 222 (598)
+..+....+. .....+.|.+.+.+++|+++|+||+|.|+|..+-..+ ....+..+||+|+||+-+.+
T Consensus 166 ~~~~~~~~~~~~~~~~~~~l~~ll~~~~v~~vl~GH~H~y~r~~p~~~~~~~~~~~~~~~~~g~~yiv~G~~G~~~~~ 243 (294)
T cd00839 166 YCSNTDHDDCIEGEKMRAALEDLFYKYGVDLVLSGHVHAYERTCPVYNGTVVGDCNPYSNPKGPVHIVIGAGGNDEGL 243 (294)
T ss_pred EecCccccccchhHHHHHHHHHHHHHhCCCEEEEccceeeEeechhhCCEeccccccccCCCccEEEEECCCccccCc
Confidence 9875543321 1122223433333789999999999999998863221 01124689999999997754
No 3
>PLN02533 probable purple acid phosphatase
Probab=99.70 E-value=1.4e-16 Score=172.93 Aligned_cols=149 Identities=19% Similarity=0.252 Sum_probs=101.3
Q ss_pred CCeEEecCCCCCCCCCh----HHHHHhhcccCCCCcccCCC------CCceEEEECCCcEEEEEeecccCCCCCHHHHHH
Q 007562 63 GPQCYIIPGNHDWFDGL----NTFMRFICHKSWLGGWFMPQ------KKSYFALQLPKGWWVFGLDLALHCDIDVYQFKF 132 (598)
Q Consensus 63 ~p~~~~~~gnhd~~~gL----~aF~r~F~~~~~l~gw~~~Q------~~sYfAl~Lp~~wwLiGLDsql~g~id~~Q~~w 132 (598)
.| ++.+|||||..... +.|. .....|.+|. +..||+.+.+. +.++.||+......+.+|++|
T Consensus 199 ~P-~m~~~GNHE~~~~~~~~~~~f~------~y~~rf~mP~~~~g~~~~~yYSfd~g~-vhfI~Lds~~~~~~~~~Q~~W 270 (427)
T PLN02533 199 RP-WMVTHGNHELEKIPILHPEKFT------AYNARWRMPFEESGSTSNLYYSFNVYG-VHIIMLGSYTDFEPGSEQYQW 270 (427)
T ss_pred Cc-eEEeCccccccccccccCcCcc------chhhcccCCccccCCCCCceEEEEECC-EEEEEEeCCccccCchHHHHH
Confidence 36 99999999975321 1111 1123445543 34689999986 999999998776677899999
Q ss_pred HHHHHHhhcCCC-CeEEEEecCCCccccccccCCC-ccchHH-HHHhhhCCceeEEEcCccCCCcceeecCCCC-Ccccc
Q 007562 133 FAELVKEQVGER-DSVIIMTHEPNWLLDWYFNNVS-GKNVKH-LICDYLKGRCKLRIAGDMHHYMRHSYVPSDG-PVYVQ 208 (598)
Q Consensus 133 f~~~l~~~~~~~-~~VIL~tHeP~w~~~~~~~~~~-~~~v~~-Li~~~l~~rV~L~LSGH~HhY~R~~~~~~~g-~~~~~ 208 (598)
|++.|++.-+.+ ..+|++.|+|.|..+..+.+.. ....++ +++.+.+++|+|+|+||+|.|+|..+...+. ...++
T Consensus 271 Le~dL~~~~r~~~pwiIv~~H~P~y~s~~~~~~~~~~~~~r~~le~Ll~~~~VdlvlsGH~H~YeR~~p~~~~~~~~~gp 350 (427)
T PLN02533 271 LENNLKKIDRKTTPWVVAVVHAPWYNSNEAHQGEKESVGMKESMETLLYKARVDLVFAGHVHAYERFDRVYQGKTDKCGP 350 (427)
T ss_pred HHHHHHhhcccCCCEEEEEeCCCeeecccccCCcchhHHHHHHHHHHHHHhCCcEEEecceecccccccccCCccCCCCC
Confidence 999997532233 4589999999997654322111 111333 3333337899999999999999987754321 11256
Q ss_pred eEEEecCCCcc
Q 007562 209 HLLVNGCGGAF 219 (598)
Q Consensus 209 ~lIVsGGGGAf 219 (598)
.+||+|+||.-
T Consensus 351 vyiv~G~gG~~ 361 (427)
T PLN02533 351 VYITIGDGGNR 361 (427)
T ss_pred EEEEeCCCccc
Confidence 89999999974
No 4
>cd07402 MPP_GpdQ Enterobacter aerogenes GpdQ and related proteins, metallophosphatase domain. GpdQ (glycerophosphodiesterase Q, also known as Rv0805 in Mycobacterium tuberculosis) is a binuclear metallophosphoesterase from Enterobacter aerogenes that catalyzes the hydrolysis of mono-, di-, and triester substrates, including some organophosphate pesticides and products of the degradation of nerve agents. The GpdQ homolog, Rv0805, has 2',3'-cyclic nucleotide phosphodiesterase activity. GpdQ and Rv0805 belong to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosa
Probab=99.60 E-value=8.5e-15 Score=144.00 Aligned_cols=137 Identities=17% Similarity=0.288 Sum_probs=93.1
Q ss_pred CCCeEEecCCCCCCCCChHHHHHhhcccCCCCcccCCCCCceEEEECCCcEEEEEeecccC----CCCCHHHHHHHHHHH
Q 007562 62 DGPQCYIIPGNHDWFDGLNTFMRFICHKSWLGGWFMPQKKSYFALQLPKGWWVFGLDLALH----CDIDVYQFKFFAELV 137 (598)
Q Consensus 62 ~~p~~~~~~gnhd~~~gL~aF~r~F~~~~~l~gw~~~Q~~sYfAl~Lp~~wwLiGLDsql~----g~id~~Q~~wf~~~l 137 (598)
+.| ++.||||||.... +...|..... .....+|.++.++ +.+++||+... +.+++.|.+||++++
T Consensus 70 ~~p-~~~v~GNHD~~~~---~~~~~~~~~~------~~~~~~~~~~~~~-~~~i~lds~~~~~~~~~~~~~ql~wL~~~L 138 (240)
T cd07402 70 PIP-VYLLPGNHDDRAA---MRAVFPELPP------APGFVQYVVDLGG-WRLILLDSSVPGQHGGELCAAQLDWLEAAL 138 (240)
T ss_pred CCC-EEEeCCCCCCHHH---HHHhhccccc------cccccceeEecCC-EEEEEEeCCCCCCcCCEECHHHHHHHHHHH
Confidence 456 9999999998543 3333322111 2344567888885 99999998753 457889999999999
Q ss_pred HhhcCCCCeEEEEecCCCccccccc-cCCCccchHHHHHhhhCC-ceeEEEcCccCCCcceeecCCCCCcccceEEEecC
Q 007562 138 KEQVGERDSVIIMTHEPNWLLDWYF-NNVSGKNVKHLICDYLKG-RCKLRIAGDMHHYMRHSYVPSDGPVYVQHLLVNGC 215 (598)
Q Consensus 138 ~~~~~~~~~VIL~tHeP~w~~~~~~-~~~~~~~v~~Li~~~l~~-rV~L~LSGH~HhY~R~~~~~~~g~~~~~~lIVsGG 215 (598)
++ .+++++|+++|+|++...... +.....+.+.+.+.+.++ +++++|+||+|..+..... + .+++++|+
T Consensus 139 ~~--~~~~~~il~~H~pp~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~v~~GH~H~~~~~~~~---g----~~~~~~gs 209 (240)
T cd07402 139 AE--APDKPTLVFLHHPPFPVGIAWMDAIGLRNAEALAAVLARHPNVRAILCGHVHRPIDGSWG---G----IPLLTAPS 209 (240)
T ss_pred Hh--CCCCCEEEEECCCCccCCchhhhhhhCCCHHHHHHHHhcCCCeeEEEECCcCchHHeEEC---C----EEEEEcCc
Confidence 75 337899999999997653211 111122333444444466 8999999999987665532 3 47788888
Q ss_pred CCc
Q 007562 216 GGA 218 (598)
Q Consensus 216 GGA 218 (598)
.|.
T Consensus 210 ~~~ 212 (240)
T cd07402 210 TCH 212 (240)
T ss_pred cee
Confidence 776
No 5
>cd07396 MPP_Nbla03831 Homo sapiens Nbla03831 and related proteins, metallophosphatase domain. Nbla03831 (also known as LOC56985) is an uncharacterized Homo sapiens protein with a domain that belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productive metal coordination.
Probab=99.60 E-value=1.7e-14 Score=146.47 Aligned_cols=140 Identities=19% Similarity=0.156 Sum_probs=94.7
Q ss_pred CCCeEEecCCCCCCCCChHHHHHhhcccCCCCcccCCCCCceEEEECCCcEEEEEeeccc--------------------
Q 007562 62 DGPQCYIIPGNHDWFDGLNTFMRFICHKSWLGGWFMPQKKSYFALQLPKGWWVFGLDLAL-------------------- 121 (598)
Q Consensus 62 ~~p~~~~~~gnhd~~~gL~aF~r~F~~~~~l~gw~~~Q~~sYfAl~Lp~~wwLiGLDsql-------------------- 121 (598)
+.| ++.+|||||+++....... ......++..||+.+.. +|.+++||+..
T Consensus 73 ~~p-~~~v~GNHD~~~~~~~~~~--------~~~~~~~~~~yysf~~~-~~~~i~lds~~~~~~~~~~~~~~~~~~~~~~ 142 (267)
T cd07396 73 KGP-VHHVLGNHDLYNPSREYLL--------LYTLLGLGAPYYSFSPG-GIRFIVLDGYDISALGRPEDTPKAENADDNS 142 (267)
T ss_pred CCC-EEEecCccccccccHhhhh--------cccccCCCCceEEEecC-CcEEEEEeCCccccccCCCCChhhhhHHHhc
Confidence 346 9999999999765332211 11122356678899876 69999999852
Q ss_pred --------------CCCCCHHHHHHHHHHHHhhcCCCCeEEEEecCCCccccccccCCCccchHHHHHhhhC-CceeEEE
Q 007562 122 --------------HCDIDVYQFKFFAELVKEQVGERDSVIIMTHEPNWLLDWYFNNVSGKNVKHLICDYLK-GRCKLRI 186 (598)
Q Consensus 122 --------------~g~id~~Q~~wf~~~l~~~~~~~~~VIL~tHeP~w~~~~~~~~~~~~~v~~Li~~~l~-~rV~L~L 186 (598)
.|.+++.|++||++.+++....+.++|+++|+|.+.... ......++.+.+.+.+.+ .+|+++|
T Consensus 143 ~~~~~~~~~~~~~~~G~l~~~Ql~WL~~~L~~~~~~~~~viV~~Hhp~~~~~~-~~~~~~~~~~~~~~ll~~~~~V~~v~ 221 (267)
T cd07396 143 NLGLYLSEPRFVDWNGGIGEEQLQWLRNELQEADANGEKVIIFSHFPLHPEST-SPHGLLWNHEEVLSILRAYGCVKACI 221 (267)
T ss_pred hhhhhccCccceeccCcCCHHHHHHHHHHHHHHHhcCCeEEEEEeccCCCCCC-CccccccCHHHHHHHHHhCCCEEEEE
Confidence 356788999999999986545678999999999886643 111223344445444445 4799999
Q ss_pred cCccCCCcceeecCCCCCcccceEEEecCCCcc
Q 007562 187 AGDMHHYMRHSYVPSDGPVYVQHLLVNGCGGAF 219 (598)
Q Consensus 187 SGH~HhY~R~~~~~~~g~~~~~~lIVsGGGGAf 219 (598)
|||+|.++.... +| .+++++|+-.-.
T Consensus 222 ~GH~H~~~~~~~---~g----i~~~~~~a~~~~ 247 (267)
T cd07396 222 SGHDHEGGYAQR---HG----IHFLTLEGMVET 247 (267)
T ss_pred cCCcCCCCcccc---CC----eeEEEechhhcC
Confidence 999998864431 13 467787665544
No 6
>cd07395 MPP_CSTP1 Homo sapiens CSTP1 and related proteins, metallophosphatase domain. CSTP1 (complete S-transactivated protein 1) is an uncharacterized Homo sapiens protein with a metallophosphatase domain, that is transactivated by the complete S protein of hepatitis B virus. CSTP1 belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is th
Probab=99.59 E-value=1.9e-14 Score=144.58 Aligned_cols=174 Identities=20% Similarity=0.177 Sum_probs=110.3
Q ss_pred eeeeeceeeecCCChhhHHhhhcchhhhhcCCCCCCCCCccccCCCCCCCCCcccccCCCCeEEecCCCCCCCCCh-HHH
Q 007562 4 LRFVWIHCRYPNPSAFTYERRLFRPFEYALQPPPWYKKDHVAVNKPEVPSGVPELKQYDGPQCYIIPGNHDWFDGL-NTF 82 (598)
Q Consensus 4 ~~~~~gDlvYp~~s~~~Y~~rf~~Py~~Al~~~~~~~~~~i~~~~p~~p~~~~~~~~~~~p~~~~~~gnhd~~~gL-~aF 82 (598)
+-+++||++.-....+ |..+..+-|...++. + ....| ++.+|||||..... ...
T Consensus 52 ~ii~~GDl~~~~~~~~-~~~~~~~~~~~~~~~----------------------~-~~~vp-~~~i~GNHD~~~~~~~~~ 106 (262)
T cd07395 52 FVVVCGDLVNAMPGDE-LRERQVSDLKDVLSL----------------------L-DPDIP-LVCVCGNHDVGNTPTEES 106 (262)
T ss_pred EEEEeCCcCCCCcchh-hHHHHHHHHHHHHhh----------------------c-cCCCc-EEEeCCCCCCCCCCChhH
Confidence 3478999998766643 333334555555421 0 11235 99999999985331 111
Q ss_pred HHhhcccCCCCcccCCCCCceEEEECCCcEEEEEeecccCC------CCCHHHHHHHHHHHHhhc-CCCCeEEEEecCCC
Q 007562 83 MRFICHKSWLGGWFMPQKKSYFALQLPKGWWVFGLDLALHC------DIDVYQFKFFAELVKEQV-GERDSVIIMTHEPN 155 (598)
Q Consensus 83 ~r~F~~~~~l~gw~~~Q~~sYfAl~Lp~~wwLiGLDsql~g------~id~~Q~~wf~~~l~~~~-~~~~~VIL~tHeP~ 155 (598)
+..|. ...+..||+.+.++ +++++||++... .+...|++||++++++.. ..++++|+++|+|.
T Consensus 107 ~~~f~---------~~~g~~~y~~~~~~-~~~i~lds~~~~~~~~~~~~~~~ql~WL~~~L~~~~~~~~~~~iv~~H~P~ 176 (262)
T cd07395 107 IKDYR---------DVFGDDYFSFWVGG-VFFIVLNSQLFFDPSEVPELAQAQDVWLEEQLEIAKESDCKHVIVFQHIPW 176 (262)
T ss_pred HHHHH---------HHhCCcceEEEECC-EEEEEeccccccCccccccchHHHHHHHHHHHHHHHhccCCcEEEEECcCC
Confidence 11221 11234577888865 999999997532 456799999999997532 35679999999999
Q ss_pred ccccccccCC--C--ccchHHHHHhhhCCceeEEEcCccCCCcceeecCCCCCcccceEEEecCCCcc
Q 007562 156 WLLDWYFNNV--S--GKNVKHLICDYLKGRCKLRIAGDMHHYMRHSYVPSDGPVYVQHLLVNGCGGAF 219 (598)
Q Consensus 156 w~~~~~~~~~--~--~~~v~~Li~~~l~~rV~L~LSGH~HhY~R~~~~~~~g~~~~~~lIVsGGGGAf 219 (598)
+..+....+. . ..+...+.+.+.+++|+++|+||+|.+...... + .+++++|+.|+.
T Consensus 177 ~~~~~~~~~~~~~~~~~~~~~l~~ll~~~~V~~v~~GH~H~~~~~~~~---g----~~~~~~~~~~~~ 237 (262)
T cd07395 177 FLEDPDEEDSYFNIPKSVRKPLLDKFKKAGVKAVFSGHYHRNAGGRYG---G----LEMVVTSAIGAQ 237 (262)
T ss_pred ccCCCCCCcccCCcCHHHHHHHHHHHHhcCceEEEECccccCCceEEC---C----EEEEEcCceecc
Confidence 8754432211 1 112233444444789999999999987765422 3 367888877763
No 7
>PRK11148 cyclic 3',5'-adenosine monophosphate phosphodiesterase; Provisional
Probab=99.51 E-value=2.2e-13 Score=138.75 Aligned_cols=136 Identities=19% Similarity=0.341 Sum_probs=81.8
Q ss_pred CCCCeEEecCCCCCCCCChHHHHHhhcccCCCCcccCCCCCceEEEECCCcEEEEEeeccc----CCCCCHHHHHHHHHH
Q 007562 61 YDGPQCYIIPGNHDWFDGLNTFMRFICHKSWLGGWFMPQKKSYFALQLPKGWWVFGLDLAL----HCDIDVYQFKFFAEL 136 (598)
Q Consensus 61 ~~~p~~~~~~gnhd~~~gL~aF~r~F~~~~~l~gw~~~Q~~sYfAl~Lp~~wwLiGLDsql----~g~id~~Q~~wf~~~ 136 (598)
.+.| ++.||||||.... +...+... ++. ..++.+. ..+|++++||+.. .|.+++.|++||+++
T Consensus 84 l~~P-v~~v~GNHD~~~~---~~~~~~~~----~~~----~~~~~~~-~~~~~~i~Lds~~~g~~~G~l~~~ql~wL~~~ 150 (275)
T PRK11148 84 LRKP-CVWLPGNHDFQPA---MYSALQDA----GIS----PAKHVLI-GEHWQILLLDSQVFGVPHGELSEYQLEWLERK 150 (275)
T ss_pred cCCc-EEEeCCCCCChHH---HHHHHhhc----CCC----ccceEEe-cCCEEEEEecCCCCCCcCCEeCHHHHHHHHHH
Confidence 3456 9999999998644 32333211 121 1233333 3459999999986 456788999999999
Q ss_pred HHhhcCCCCeEEEEecCCCccccccc-cCCCccchHHHHHhhhCC-ceeEEEcCccCCCcceeecCCCCCcccceEEEec
Q 007562 137 VKEQVGERDSVIIMTHEPNWLLDWYF-NNVSGKNVKHLICDYLKG-RCKLRIAGDMHHYMRHSYVPSDGPVYVQHLLVNG 214 (598)
Q Consensus 137 l~~~~~~~~~VIL~tHeP~w~~~~~~-~~~~~~~v~~Li~~~l~~-rV~L~LSGH~HhY~R~~~~~~~g~~~~~~lIVsG 214 (598)
+++ .+++++++++|||++..+..+ +.....+.+++.+-+.++ +|+++|+||+|........ | ..+++++
T Consensus 151 L~~--~~~~~~vv~~hH~P~~~~~~~~d~~~l~n~~~l~~ll~~~~~v~~vl~GH~H~~~~~~~~---g----i~~~~~p 221 (275)
T PRK11148 151 LAD--APERHTLVLLHHHPLPAGCAWLDQHSLRNAHELAEVLAKFPNVKAILCGHIHQELDLDWN---G----RRLLATP 221 (275)
T ss_pred Hhh--CCCCCeEEEEcCCCCCCCcchhhccCCCCHHHHHHHHhcCCCceEEEecccChHHhceEC---C----EEEEEcC
Confidence 975 344566666665444332211 112334455554544465 8999999999975443221 3 3456665
Q ss_pred CCCc
Q 007562 215 CGGA 218 (598)
Q Consensus 215 GGGA 218 (598)
+-+.
T Consensus 222 s~~~ 225 (275)
T PRK11148 222 STCV 225 (275)
T ss_pred CCcC
Confidence 5443
No 8
>PTZ00422 glideosome-associated protein 50; Provisional
Probab=99.49 E-value=2.5e-13 Score=145.99 Aligned_cols=182 Identities=13% Similarity=0.105 Sum_probs=120.6
Q ss_pred eeeeeceeeecCCChhhHHhhhcchhhhhcCCCCCCCCCccccCCCCCCCCCcccccCCCCeEEecCCCCCCCCChHHHH
Q 007562 4 LRFVWIHCRYPNPSAFTYERRLFRPFEYALQPPPWYKKDHVAVNKPEVPSGVPELKQYDGPQCYIIPGNHDWFDGLNTFM 83 (598)
Q Consensus 4 ~~~~~gDlvYp~~s~~~Y~~rf~~Py~~Al~~~~~~~~~~i~~~~p~~p~~~~~~~~~~~p~~~~~~gnhd~~~gL~aF~ 83 (598)
|-..+||-- ++|-......||.+-||.-...+ . .....| .++++|||||.-+..++.
T Consensus 60 FVls~GDNF-~~Gv~sv~Dp~f~~~FE~vY~~~--------------------s-~~L~~P-wy~vLGNHDy~Gn~~AQi 116 (394)
T PTZ00422 60 FLVSPGSNF-PGGVDGLNDPKWKHCFENVYSEE--------------------S-GDMQIP-FFTVLGQADWDGNYNAEL 116 (394)
T ss_pred EEEECCccc-cCCCCCccchhHHhhHhhhccCc--------------------c-hhhCCC-eEEeCCcccccCCchhhh
Confidence 345789974 78776666666666666543111 0 012346 999999999988888887
Q ss_pred Hhhccc----------------CCCCcccCCCCCceEEEE-------------C---CCcEEEEEeecccCC------CC
Q 007562 84 RFICHK----------------SWLGGWFMPQKKSYFALQ-------------L---PKGWWVFGLDLALHC------DI 125 (598)
Q Consensus 84 r~F~~~----------------~~l~gw~~~Q~~sYfAl~-------------L---p~~wwLiGLDsql~g------~i 125 (598)
...-+. ..-..|.+|.. ||... . ...--++-+|+.... +.
T Consensus 117 ~r~~~~y~~~~~~~~~~y~~~~~~~~RW~mP~~--yY~~~~~f~~~~~~~~~~~~~~~~~v~fifiDT~~l~~~~~~~~~ 194 (394)
T PTZ00422 117 LKGQNVYLNGHGQTDIEYDSNNDIYPKWIMPNY--WYHYFTHFTDTSGPSLLKSGHKDMSVAFIFIDTWILSSSFPYKKV 194 (394)
T ss_pred ccccccccccccccccccccccccCCCccCCch--hheeeeeeecccccccccccCCCCEEEEEEEECchhcccCCcccc
Confidence 422110 11347777743 55431 1 111568899986321 23
Q ss_pred CHHHHHHHHHHHHhhcCCCCeEEEEecCCCccccccccCCCccchHHHHHhhh-CCceeEEEcCccCCCcceeecCCCCC
Q 007562 126 DVYQFKFFAELVKEQVGERDSVIIMTHEPNWLLDWYFNNVSGKNVKHLICDYL-KGRCKLRIAGDMHHYMRHSYVPSDGP 204 (598)
Q Consensus 126 d~~Q~~wf~~~l~~~~~~~~~VIL~tHeP~w~~~~~~~~~~~~~v~~Li~~~l-~~rV~L~LSGH~HhY~R~~~~~~~g~ 204 (598)
...|.+|+++.|+.+....+.+|++.|||.|+.+.++++ . .+.+.++.++ +++|++.+|||.|+|++.... +
T Consensus 195 ~~~~w~~L~~~L~~a~k~a~WkIVvGHhPIySsG~hg~~--~-~L~~~L~PLL~ky~VdlYisGHDH~lq~i~~~---g- 267 (394)
T PTZ00422 195 SERAWQDLKATLEYAPKIADYIIVVGDKPIYSSGSSKGD--S-YLSYYLLPLLKDAQVDLYISGYDRNMEVLTDE---G- 267 (394)
T ss_pred CHHHHHHHHHHHHhhccCCCeEEEEecCceeecCCCCCC--H-HHHHHHHHHHHHcCcCEEEEccccceEEecCC---C-
Confidence 467899999988644555689999999999999765432 1 2333334444 789999999999999997532 2
Q ss_pred cccceEEEecCCCccc
Q 007562 205 VYVQHLLVNGCGGAFL 220 (598)
Q Consensus 205 ~~~~~lIVsGGGGAfL 220 (598)
.++||||+||+-.
T Consensus 268 ---t~yIvSGaGs~~~ 280 (394)
T PTZ00422 268 ---TAHINCGSGGNSG 280 (394)
T ss_pred ---ceEEEeCcccccc
Confidence 5799999999743
No 9
>cd07401 MPP_TMEM62_N Homo sapiens TMEM62, N-terminal metallophosphatase domain. TMEM62 (transmembrane protein 62) is an uncharacterized Homo sapiens transmembrane protein with an N-terminal metallophosphatase domain. TMEM62 belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productive metal coordination.
Probab=99.42 E-value=1.3e-12 Score=132.54 Aligned_cols=130 Identities=15% Similarity=0.122 Sum_probs=82.1
Q ss_pred CCeEEecCCCCCCCCCh--HHHHHhhcccCCCCcccCCCCCceEEE--ECCCcEEEEEeecccC----------CCCCHH
Q 007562 63 GPQCYIIPGNHDWFDGL--NTFMRFICHKSWLGGWFMPQKKSYFAL--QLPKGWWVFGLDLALH----------CDIDVY 128 (598)
Q Consensus 63 ~p~~~~~~gnhd~~~gL--~aF~r~F~~~~~l~gw~~~Q~~sYfAl--~Lp~~wwLiGLDsql~----------g~id~~ 128 (598)
.| ++.+|||||.|.-. +.+.++|.+ .. ++..... .||.. +.+ ++.++|||++.. |.+++.
T Consensus 77 ~p-~~~v~GNHD~~~~~~~~~~~~~~~~--y~-~~~~~~~-~~~~~~~~~~-~~~~I~Ldt~~~~~~~~~~~~~g~l~~~ 150 (256)
T cd07401 77 EK-WFDIRGNHDLFNIPSLDSENNYYRK--YS-ATGRDGS-FSFSHTTRFG-NYSFIGVDPTLFPGPKRPFNFFGSLDKK 150 (256)
T ss_pred ce-EEEeCCCCCcCCCCCccchhhHHHH--hh-eecCCCc-cceEEEecCC-CEEEEEEcCccCCCCCCCCceeccCCHH
Confidence 45 99999999997321 111111110 11 2222222 23333 334 499999999752 667899
Q ss_pred HHHHHHHHHHhhcCCCCeEEEEecCCCccccccccCCCccchHHHHHhhhCCceeEEEcCccCCCcceeecCCCC
Q 007562 129 QFKFFAELVKEQVGERDSVIIMTHEPNWLLDWYFNNVSGKNVKHLICDYLKGRCKLRIAGDMHHYMRHSYVPSDG 203 (598)
Q Consensus 129 Q~~wf~~~l~~~~~~~~~VIL~tHeP~w~~~~~~~~~~~~~v~~Li~~~l~~rV~L~LSGH~HhY~R~~~~~~~g 203 (598)
|++|+++.+++ .++++.+|+++|+|.+...... ..+.+.+.+.+.+++|+++|+||+|.+++..+.-.++
T Consensus 151 ql~wL~~~L~~-~~~~~~~IV~~HhP~~~~~~~~----~~~~~~~~~ll~~~~v~~vl~GH~H~~~~~~p~h~~~ 220 (256)
T cd07401 151 LLDRLEKELEK-STNSNYTIWFGHYPTSTIISPS----AKSSSKFKDLLKKYNVTAYLCGHLHPLGGLEPVHYAG 220 (256)
T ss_pred HHHHHHHHHHh-cccCCeEEEEEcccchhccCCC----cchhHHHHHHHHhcCCcEEEeCCccCCCcceeeeecC
Confidence 99999998864 4556789999999986532211 1122234444447789999999999998866664334
No 10
>KOG1378 consensus Purple acid phosphatase [Carbohydrate transport and metabolism]
Probab=99.40 E-value=4.3e-12 Score=137.60 Aligned_cols=184 Identities=16% Similarity=0.211 Sum_probs=123.4
Q ss_pred eeeeeceeeecCCChh---hHHhhhcchhhhhcCCCCCCCCCccccCCCCCCCCCcccccCCCCeEEecCCCCCCCCChH
Q 007562 4 LRFVWIHCRYPNPSAF---TYERRLFRPFEYALQPPPWYKKDHVAVNKPEVPSGVPELKQYDGPQCYIIPGNHDWFDGLN 80 (598)
Q Consensus 4 ~~~~~gDlvYp~~s~~---~Y~~rf~~Py~~Al~~~~~~~~~~i~~~~p~~p~~~~~~~~~~~p~~~~~~gnhd~~~gL~ 80 (598)
+-+|.||++|-.+-.. ..--|++||.... .| -..+.|||+.---..
T Consensus 177 ~vlhiGDlsYa~~~~n~~wD~f~r~vEp~As~------------------------------vP-ymv~~GNHE~d~~~~ 225 (452)
T KOG1378|consen 177 AVLHIGDLSYAMGYSNWQWDEFGRQVEPIASY------------------------------VP-YMVCSGNHEIDWPPQ 225 (452)
T ss_pred EEEEecchhhcCCCCccchHHHHhhhhhhhcc------------------------------Cc-eEEecccccccCCCc
Confidence 4578899998766553 3345677776632 35 888999998532211
Q ss_pred HHHHhhcccCCCCcccCCCCCc------eEEEECCCcEEEEEeecccCCCC--CHHHHHHHHHHHHhhcCC--CCeEEEE
Q 007562 81 TFMRFICHKSWLGGWFMPQKKS------YFALQLPKGWWVFGLDLALHCDI--DVYQFKFFAELVKEQVGE--RDSVIIM 150 (598)
Q Consensus 81 aF~r~F~~~~~l~gw~~~Q~~s------YfAl~Lp~~wwLiGLDsql~g~i--d~~Q~~wf~~~l~~~~~~--~~~VIL~ 150 (598)
. |-......|.+|-+.+ ||+.++.. ..+++|++...... ..+|++||++.|++ ++. ...+|++
T Consensus 226 ~-----~F~~y~~Rf~mP~~~s~s~~~l~YSfd~G~-vhfv~lsse~~~~~~~~~~QY~WL~~dL~~-v~r~~tPWlIv~ 298 (452)
T KOG1378|consen 226 P-----CFVPYSARFNMPGNSSESDSNLYYSFDVGG-VHFVVLSTETYYNFLKGTAQYQWLERDLAS-VDRKKTPWLIVQ 298 (452)
T ss_pred c-----cccccceeeccCCCcCCCCCceeEEEeecc-EEEEEEeccccccccccchHHHHHHHHHHH-hcccCCCeEEEE
Confidence 1 2222344555664433 99999997 99999998775433 35999999999964 333 5899999
Q ss_pred ecCCCcccccc-ccCCCc-cchH-HHHHhhhCCceeEEEcCccCCCcceeecCCC------C-----CcccceEEEecCC
Q 007562 151 THEPNWLLDWY-FNNVSG-KNVK-HLICDYLKGRCKLRIAGDMHHYMRHSYVPSD------G-----PVYVQHLLVNGCG 216 (598)
Q Consensus 151 tHeP~w~~~~~-~~~~~~-~~v~-~Li~~~l~~rV~L~LSGH~HhY~R~~~~~~~------g-----~~~~~~lIVsGGG 216 (598)
.|.|.|..... +-..+. ...+ .|++.+.+++|+++|+||.|.|+|..+.... + ...++..|+.|+|
T Consensus 299 ~HrP~Y~S~~~~~~reG~~~~~~~~LE~l~~~~~VDvvf~GHvH~YER~~piyn~~~~~~~~~~~~~d~~aPvyI~~G~~ 378 (452)
T KOG1378|consen 299 GHRPMYCSSNDAHYREGEFESMREGLEPLFVKYKVDVVFWGHVHRYERFCPIYNNTCGTGWGPVHLVDGMAPIYITVGDG 378 (452)
T ss_pred ecccceecCCchhhccCcchhhHHHHHHHHHHhceeEEEeccceehhccchhhcceeeccCCcccccCCCCCEEEEEccC
Confidence 99999988662 111111 1222 4655555999999999999999998764321 1 1235789999999
Q ss_pred Cc--ccccccc
Q 007562 217 GA--FLHPTHV 225 (598)
Q Consensus 217 GA--fLhpth~ 225 (598)
|+ -+.+...
T Consensus 379 G~~e~~~~~~~ 389 (452)
T KOG1378|consen 379 GNHEHLDPFSS 389 (452)
T ss_pred CcccccCcccC
Confidence 96 5555554
No 11
>cd00842 MPP_ASMase acid sphingomyelinase and related proteins, metallophosphatase domain. Acid sphingomyelinase (ASMase) is a ubiquitously expressed phosphodiesterase which hydrolyzes sphingomyelin in acid pH conditions to form ceramide, a bioactive second messenger, as part of the sphingomyelin signaling pathway. ASMase is localized at the noncytosolic leaflet of biomembranes (for example the luminal leaflet of endosomes, lysosomes and phagosomes, and the extracellular leaflet of plasma membranes). ASMase-deficient humans develop Niemann-Pick disease. This disease is characterized by lysosomal storage of sphingomyelin in all tissues. Although ASMase-deficient mice are resistant to stress-induced apoptosis, they have greater susceptibility to bacterial infection. The latter correlates with defective phagolysosomal fusion and antibacterial killing activity in ASMase-deficient macrophages. ASMase belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but
Probab=99.37 E-value=6e-12 Score=128.91 Aligned_cols=160 Identities=16% Similarity=0.063 Sum_probs=98.3
Q ss_pred eeeeeceeeecCCChhhHHh-------hhcchhhhhcCCCCCCCCCccccCCCCCCCCCcccccCCCCeEEecCCCCCCC
Q 007562 4 LRFVWIHCRYPNPSAFTYER-------RLFRPFEYALQPPPWYKKDHVAVNKPEVPSGVPELKQYDGPQCYIIPGNHDWF 76 (598)
Q Consensus 4 ~~~~~gDlvYp~~s~~~Y~~-------rf~~Py~~Al~~~~~~~~~~i~~~~p~~p~~~~~~~~~~~p~~~~~~gnhd~~ 76 (598)
|-++|||+++.....+..+. .+++.++..+ .+.| +++++||||.+
T Consensus 71 fii~tGD~v~h~~~~~~~~~~~~~~~~~~~~~l~~~~---------------------------~~~p-v~~~~GNHD~~ 122 (296)
T cd00842 71 FILWTGDLVRHDVDEQTPETLVLISISNLTSLLKKAF---------------------------PDTP-VYPALGNHDSY 122 (296)
T ss_pred EEEEcCCCCCCCchhhchhHHHHHHHHHHHHHHHHhC---------------------------CCCC-EEEcCCCCCCC
Confidence 44789999999876655433 3444444322 1235 99999999987
Q ss_pred CC--------hHH----HHHhhcccCCCCcccCCCCCceEEEECCCcEEEEEeecccC-----------CCCCHHHHHHH
Q 007562 77 DG--------LNT----FMRFICHKSWLGGWFMPQKKSYFALQLPKGWWVFGLDLALH-----------CDIDVYQFKFF 133 (598)
Q Consensus 77 ~g--------L~a----F~r~F~~~~~l~gw~~~Q~~sYfAl~Lp~~wwLiGLDsql~-----------g~id~~Q~~wf 133 (598)
.. ... +...+..--+..+..+-.+..||+.++..++++|+||++.. ......|++||
T Consensus 123 p~~~~~~~~~~~~~~~~~~~~w~~~l~~~~~~~~~~ggYY~~~~~~~l~vI~Lnt~~~~~~~~~~~~~~~~~~~~Ql~WL 202 (296)
T cd00842 123 PVNQFPPNNSPSWLYDALAELWKSWLPEEAEETFKKGGYYSVPVKPGLRVISLNTNLYYKKNFWLLGSNETDPAGQLQWL 202 (296)
T ss_pred cccccCCcccccHHHHHHHHHHHhhcCHHHHHHhhcceEEEEEcCCCeEEEEEeCccccccChhhhccCCCCHHHHHHHH
Confidence 43 111 11111110001111223567889999767799999999752 12336899999
Q ss_pred HHHHHhhcCCCCeEEEEecCCCccccccccCCCccchHHHHHhhhCC--ceeEEEcCccCCCc
Q 007562 134 AELVKEQVGERDSVIIMTHEPNWLLDWYFNNVSGKNVKHLICDYLKG--RCKLRIAGDMHHYM 194 (598)
Q Consensus 134 ~~~l~~~~~~~~~VIL~tHeP~w~~~~~~~~~~~~~v~~Li~~~l~~--rV~L~LSGH~HhY~ 194 (598)
+++|+++...+.+|++++|+|......... ....+.+.+-+.++ .+...|+||+|..+
T Consensus 203 ~~~L~~a~~~~~~v~I~~HiPp~~~~~~~~---~~~~~~~~~ii~~y~~~i~~~~~GH~H~d~ 262 (296)
T cd00842 203 EDELQEAEQAGEKVWIIGHIPPGVNSYDTL---ENWSERYLQIINRYSDTIAGQFFGHTHRDE 262 (296)
T ss_pred HHHHHHHHHCCCeEEEEeccCCCCcccccc---hHHHHHHHHHHHHHHHhhheeeecccccce
Confidence 999987666778999999999987633210 01122222222233 37899999999543
No 12
>cd07399 MPP_YvnB Bacillus subtilis YvnB and related proteins, metallophosphatase domain. YvnB (BSU35040) is an uncharacterized Bacillus subtilis protein with a metallophosphatase domain. This family includes bacterial and eukaryotic proteins similar to YvnB. YvnB belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for
Probab=99.28 E-value=3.2e-11 Score=119.26 Aligned_cols=72 Identities=14% Similarity=0.113 Sum_probs=51.3
Q ss_pred CCHHHHHHHHHHHHhhcCCCCeEEEEecCCCccccccccCCC----ccchHHHHHhhh-CC-ceeEEEcCccCCCcceee
Q 007562 125 IDVYQFKFFAELVKEQVGERDSVIIMTHEPNWLLDWYFNNVS----GKNVKHLICDYL-KG-RCKLRIAGDMHHYMRHSY 198 (598)
Q Consensus 125 id~~Q~~wf~~~l~~~~~~~~~VIL~tHeP~w~~~~~~~~~~----~~~v~~Li~~~l-~~-rV~L~LSGH~HhY~R~~~ 198 (598)
++.+|++||+++|++ .+++++|+++|+|.+..+...+... ..+.++.+.+++ ++ +|+++|+||+|.+.+-..
T Consensus 89 ~~~~ql~WL~~~L~~--~~~~~~iv~~H~p~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~V~~v~~GH~H~~~~~~~ 166 (214)
T cd07399 89 PRDEVLQWANEVLKK--HPDRPAILTTHAYLNCDDSRPDSIDYDSDVNDGQQIWDKLVKKNDNVFMVLSGHVHGAGRTTL 166 (214)
T ss_pred CCHHHHHHHHHHHHH--CCCCCEEEEecccccCCCCcCcccccccccccHHHHHHHHHhCCCCEEEEEccccCCCceEEE
Confidence 578999999999975 5578999999999996643222111 123333445555 55 799999999998876654
No 13
>PF00149 Metallophos: Calcineurin-like phosphoesterase; InterPro: IPR004843 This domain is found in a diverse range of phosphoesterases [], including protein phosphoserine phosphatases, nucleotidases, sphingomyelin phosphodiesterases and 2'-3' cAMP phosphodiesterases, as well as nucleases such as bacterial SbcD or yeast MRE11. The most conserved regions in this domain centre around the metal chelating residues.; GO: 0016787 hydrolase activity; PDB: 2IAE_C 3DW8_F 3FGA_C 2IE4_C 2NYM_C 2NYL_C 3K7V_C 2NPP_C 2IE3_C 3K7W_C ....
Probab=99.17 E-value=2.2e-11 Score=106.11 Aligned_cols=159 Identities=14% Similarity=0.207 Sum_probs=82.3
Q ss_pred eeeeceeeecCCChhhHHhhhcchhhhhcCCCCCCCCCccccCCCCCCCCCcccccCCCCeEEecCCCCCCCCChHHHHH
Q 007562 5 RFVWIHCRYPNPSAFTYERRLFRPFEYALQPPPWYKKDHVAVNKPEVPSGVPELKQYDGPQCYIIPGNHDWFDGLNTFMR 84 (598)
Q Consensus 5 ~~~~gDlvYp~~s~~~Y~~rf~~Py~~Al~~~~~~~~~~i~~~~p~~p~~~~~~~~~~~p~~~~~~gnhd~~~gL~aF~r 84 (598)
-+++||+++.....+.....+..-... .....| ++.++||||++........
T Consensus 35 ii~~GD~~~~~~~~~~~~~~~~~~~~~---------------------------~~~~~~-~~~~~GNHD~~~~~~~~~~ 86 (200)
T PF00149_consen 35 IIFLGDLVDGGNPSEEWRAQFWFFIRL---------------------------LNPKIP-VYFILGNHDYYSGNSFYGF 86 (200)
T ss_dssp EEEESTSSSSSSHHHHHHHHHHHHHHH---------------------------HHTTTT-EEEEE-TTSSHHHHHHHHH
T ss_pred EEeeccccccccccccchhhhccchhh---------------------------hhcccc-ccccccccccceecccccc
Confidence 478999999999988888776411110 012345 9999999999865443322
Q ss_pred hhcc-cCC---CCcccCCCCCceEEEECCCcEEEEEeecccCCC-CCHHHHHHHHHHHHhhcCCCCeEEEEecCCCcccc
Q 007562 85 FICH-KSW---LGGWFMPQKKSYFALQLPKGWWVFGLDLALHCD-IDVYQFKFFAELVKEQVGERDSVIIMTHEPNWLLD 159 (598)
Q Consensus 85 ~F~~-~~~---l~gw~~~Q~~sYfAl~Lp~~wwLiGLDsql~g~-id~~Q~~wf~~~l~~~~~~~~~VIL~tHeP~w~~~ 159 (598)
.... ... ...+...++.. ....... .+....+...... ....|..|..........+.+++|+++|+|.+...
T Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~~H~p~~~~~ 164 (200)
T PF00149_consen 87 YDYQFEDYYGNYNYYYSYFNNK-VIFDNDN-FWFNSGNNEYPDYGMEAQQEWWLWLLLLLEAKNDDPVIVFTHHPPYSSS 164 (200)
T ss_dssp HHHHHSSEEECSSEEECTESSE-EEEEETT-EEEEEHCCHTHHSEHHHHHHHHHHHHHHHHEEEESEEEEEESSSSSTTS
T ss_pred ccccccccccccccccccCcce-eeecccc-cccccccccccccccccchhcccccccccccccccceeEEEecCCCCcc
Confidence 1111 110 10111111111 1222222 2222222111111 12234444444333445678999999999999885
Q ss_pred ccccCC-CccchHHHHHhhh-CCceeEEEcCccCCC
Q 007562 160 WYFNNV-SGKNVKHLICDYL-KGRCKLRIAGDMHHY 193 (598)
Q Consensus 160 ~~~~~~-~~~~v~~Li~~~l-~~rV~L~LSGH~HhY 193 (598)
...... ........+..++ ..+|+++++||+|.|
T Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~GH~H~~ 200 (200)
T PF00149_consen 165 SDSSSYGNESKGREALEELLKKYNVDLVLSGHTHRY 200 (200)
T ss_dssp SSTHHHSSEEEHHHHHHHHHHHTTCSEEEEESSSSE
T ss_pred ccccccchhhccHHHHHHHHhhCCCCEEEeCceecC
Confidence 433211 1112223333333 789999999999976
No 14
>cd08163 MPP_Cdc1 Saccharomyces cerevisiae CDC1 and related proteins, metallophosphatase domain. Cdc1 (also known as XlCdc1 in Xenopus laevis) is an endoplasmic reticulum-localized transmembrane lipid phosphatase with a metallophosphatase domain facing the ER lumen. In budding yeast, the gene encoding CDC1 is essential while nonlethal mutations cause defects in Golgi inheritance and actin polarization. Cdc1 mutant cells accumulate an unidentified phospholipid, suggesting that Cdc1 is a lipid phosphatase. Cdc1 mutant cells also have highly elevated intracellular calcium levels suggesting a possible role for Cdc1 in calcium regulation. The 5' flanking region of Cdc1 is a regulatory region with conserved binding site motifs for AP1, AP2, Sp1, NF-1 and CREB. DNA polymerase delta consists of at least four subunits - Pol3, Cdc1, Cdc27, and Cdm1. Cdc1 belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site
Probab=99.17 E-value=2.8e-10 Score=116.32 Aligned_cols=118 Identities=19% Similarity=0.155 Sum_probs=77.4
Q ss_pred eEEecCCCCCCCCC-------hHHHHHhhcccCCCCcccCCCCCceEEEECCCcEEEEEeecccC-----CCCCHHHHHH
Q 007562 65 QCYIIPGNHDWFDG-------LNTFMRFICHKSWLGGWFMPQKKSYFALQLPKGWWVFGLDLALH-----CDIDVYQFKF 132 (598)
Q Consensus 65 ~~~~~~gnhd~~~g-------L~aF~r~F~~~~~l~gw~~~Q~~sYfAl~Lp~~wwLiGLDsql~-----g~id~~Q~~w 132 (598)
+++.||||||...+ ...|.++|. ..++....++ |.+++||+... +.+...|.+|
T Consensus 86 pv~~VpGNHDig~~~~~~~~~~~rf~~~Fg-------------~~~~~~~~~~-~~fV~Lds~~l~~~~~~~~~~~~~~~ 151 (257)
T cd08163 86 MVESLPGNHDIGFGNGVVLPVRQRFEKYFG-------------PTSRVIDVGN-HTFVILDTISLSNKDDPDVYQPPREF 151 (257)
T ss_pred eEEEeCCCcccCCCCCCCHHHHHHHHHHhC-------------CCceEEEECC-EEEEEEccccccCCcccccchhHHHH
Confidence 49999999997432 233333433 2345778775 99999999742 2355689999
Q ss_pred HHHHHHhhcCCCCeEEEEecCCCccccccc------cC--------CCccc-hHH-HHHhhh-CCceeEEEcCccCCCcc
Q 007562 133 FAELVKEQVGERDSVIIMTHEPNWLLDWYF------NN--------VSGKN-VKH-LICDYL-KGRCKLRIAGDMHHYMR 195 (598)
Q Consensus 133 f~~~l~~~~~~~~~VIL~tHeP~w~~~~~~------~~--------~~~~~-v~~-Li~~~l-~~rV~L~LSGH~HhY~R 195 (598)
+++.+++ ..++.++||++|+|+|-..... .+ ..+.| ++. .-+.++ ..+++++||||+|.|=.
T Consensus 152 l~~~l~~-~~~~~p~ILl~H~Plyr~~~~~cg~~re~~~~~~~~~g~~yq~~l~~~~s~~il~~~~P~~vfsGhdH~~C~ 230 (257)
T cd08163 152 LHSFSAM-KVKSKPRILLTHVPLYRPPNTSCGPLRESKTPLPYGYGYQYQNLLEPSLSEVILKAVQPVIAFSGDDHDYCE 230 (257)
T ss_pred HHhhhhc-cCCCCcEEEEeccccccCCCCCCCCccccCCCCCCCCCccceeecCHHHHHHHHHhhCCcEEEecCCCccce
Confidence 9998753 4677899999999999774310 00 11121 111 112223 45889999999998866
Q ss_pred ee
Q 007562 196 HS 197 (598)
Q Consensus 196 ~~ 197 (598)
+.
T Consensus 231 ~~ 232 (257)
T cd08163 231 VV 232 (257)
T ss_pred eE
Confidence 55
No 15
>COG1409 Icc Predicted phosphohydrolases [General function prediction only]
Probab=99.13 E-value=5.6e-10 Score=111.12 Aligned_cols=147 Identities=19% Similarity=0.263 Sum_probs=91.1
Q ss_pred eeeeceeeecCCChhhHHhh--hcchhhhhcCCCCCCCCCccccCCCCCCCCCcccccCCCCeEEecCCCCCCCCChHHH
Q 007562 5 RFVWIHCRYPNPSAFTYERR--LFRPFEYALQPPPWYKKDHVAVNKPEVPSGVPELKQYDGPQCYIIPGNHDWFDGLNTF 82 (598)
Q Consensus 5 ~~~~gDlvYp~~s~~~Y~~r--f~~Py~~Al~~~~~~~~~~i~~~~p~~p~~~~~~~~~~~p~~~~~~gnhd~~~gL~aF 82 (598)
-.+||||+.. +..+.|+.. |++ .. ..+.| ++.+|||||.+..-...
T Consensus 37 ~v~tGDl~~~-~~~~~~~~~~~~l~----~~--------------------------~~~~~-~~~vpGNHD~~~~~~~~ 84 (301)
T COG1409 37 LVVTGDLTND-GEPEEYRRLKELLA----RL--------------------------ELPAP-VIVVPGNHDARVVNGEA 84 (301)
T ss_pred EEEccCcCCC-CCHHHHHHHHHHHh----hc--------------------------cCCCc-eEeeCCCCcCCchHHHH
Confidence 4689999988 778877654 444 10 12345 99999999987664333
Q ss_pred HHhhcccCCCCcccCCCCCceEEEECC-CcEEEEEeecccC----CCCCHHHHHHHHHHHHhhcCC-CCeEEEEecCCCc
Q 007562 83 MRFICHKSWLGGWFMPQKKSYFALQLP-KGWWVFGLDLALH----CDIDVYQFKFFAELVKEQVGE-RDSVIIMTHEPNW 156 (598)
Q Consensus 83 ~r~F~~~~~l~gw~~~Q~~sYfAl~Lp-~~wwLiGLDsql~----g~id~~Q~~wf~~~l~~~~~~-~~~VIL~tHeP~w 156 (598)
........+ .++..... .+|+++++|+... |.+++.|++|+++.++++-.. ...+|+++|||..
T Consensus 85 ~~~~~~~~~----------~~~~~~~~~~~~~~~~~d~~~~~~~~G~~~~~q~~~l~~~l~~~~~~~~~~~v~~~hh~~~ 154 (301)
T COG1409 85 FSDQFFNRY----------AVLVGACSSGGWRVIGLDSSVPGVPLGRLGAEQLDWLEEALAAAPERAKDTVVVLHHHPLP 154 (301)
T ss_pred hhhhhcccC----------cceEeeccCCceEEEEecCCCCCCCCCEECHHHHHHHHHHHHhCccccCceEEEecCCCCC
Confidence 222221110 11111111 4599999999753 678899999999999742111 2377899999988
Q ss_pred cccccccCCCccchHHHHHhhhCCc--eeEEEcCccCCC
Q 007562 157 LLDWYFNNVSGKNVKHLICDYLKGR--CKLRIAGDMHHY 193 (598)
Q Consensus 157 ~~~~~~~~~~~~~v~~Li~~~l~~r--V~L~LSGH~HhY 193 (598)
+...........+...+...+.... ++++|+||+|--
T Consensus 155 ~~~~~~~~~~l~~~~~~~~~~~~~~~~v~~vl~GH~H~~ 193 (301)
T COG1409 155 SPGTGVDRVALRDAGELLDVLIAHGNDVRLVLSGHIHLA 193 (301)
T ss_pred CCCCccceeeeecchhHHHHHHhcCCceEEEEeCccccc
Confidence 8755443322222223323333334 999999999954
No 16
>cd07393 MPP_DR1119 Deinococcus radiodurans DR1119 and related proteins, metallophosphatase domain. DR1119 is an uncharacterized Deinococcus radiodurans protein with a metallophosphatase domain. The domain present in members of this family belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productive metal coordinat
Probab=99.11 E-value=5.2e-10 Score=111.82 Aligned_cols=119 Identities=13% Similarity=0.054 Sum_probs=72.3
Q ss_pred CCCeEEecCCCCCCC-CChHHHHHhhcccCCCCcccCCCCCceEEEECCCcEEEEEeecccC-----------------C
Q 007562 62 DGPQCYIIPGNHDWF-DGLNTFMRFICHKSWLGGWFMPQKKSYFALQLPKGWWVFGLDLALH-----------------C 123 (598)
Q Consensus 62 ~~p~~~~~~gnhd~~-~gL~aF~r~F~~~~~l~gw~~~Q~~sYfAl~Lp~~wwLiGLDsql~-----------------g 123 (598)
..| +++||||||+| .+.+.+.+.+.. .++....+ .++.++. +.|+|++.-.. +
T Consensus 71 ~~~-v~~V~GNHD~~~~~~~~~~~~l~~----~~~~~~~n---~~~~~~~-i~i~G~~~~~~~~~~~~~~~~~~~~~~~~ 141 (232)
T cd07393 71 PGT-KVLLKGNHDYWWGSASKLRKALEE----SRLALLFN---NAYIDDD-VAICGTRGWDNPGNPWPPINETLKVEEDE 141 (232)
T ss_pred CCC-eEEEeCCccccCCCHHHHHHHHHh----cCeEEecc---CcEEECC-EEEEEEEeeCCCCCccccccccccchhHH
Confidence 345 89999999986 344444333321 12222222 2444554 99999873111 1
Q ss_pred CCCHHHHHHHHHHHHhhcCC--CCeEEEEecCCCccccccccCCCccchHHHHHhhhCCceeEEEcCccCCCccee
Q 007562 124 DIDVYQFKFFAELVKEQVGE--RDSVIIMTHEPNWLLDWYFNNVSGKNVKHLICDYLKGRCKLRIAGDMHHYMRHS 197 (598)
Q Consensus 124 ~id~~Q~~wf~~~l~~~~~~--~~~VIL~tHeP~w~~~~~~~~~~~~~v~~Li~~~l~~rV~L~LSGH~HhY~R~~ 197 (598)
.+...|.+|+++.+++..+. +.++|+++|+|.+..+. +...+.+.+-+.+++++++||+|.++...
T Consensus 142 ~~~~~~l~~l~~~L~~~~~~~~~~~~i~~~H~p~~~~~~--------~~~~~~~~~~~~~v~~vl~GH~H~~~~~~ 209 (232)
T cd07393 142 KIFERELERLELSLKAAKKREKEKIKIVMLHYPPANENG--------DDSPISKLIEEYGVDICVYGHLHGVGRDR 209 (232)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCCCCEEEEECCCCcCCCC--------CHHHHHHHHHHcCCCEEEECCCCCCcccc
Confidence 11246899999998753222 24699999999876532 11223233334579999999999887654
No 17
>cd07392 MPP_PAE1087 Pyrobaculum aerophilum PAE1087 and related proteins, metallophosphatase domain. PAE1087 is an uncharacterized Pyrobaculum aerophilum protein with a metallophosphatase domain. The domain present in members of this family belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productive metal coordina
Probab=99.02 E-value=3.4e-09 Score=99.63 Aligned_cols=113 Identities=19% Similarity=0.223 Sum_probs=67.0
Q ss_pred CCCeEEecCCCCCCCCChHHHHHhhcccCCCCcccCCCCCceEEEECCCcEEEEEeeccc------CCCCCHHHHHHHHH
Q 007562 62 DGPQCYIIPGNHDWFDGLNTFMRFICHKSWLGGWFMPQKKSYFALQLPKGWWVFGLDLAL------HCDIDVYQFKFFAE 135 (598)
Q Consensus 62 ~~p~~~~~~gnhd~~~gL~aF~r~F~~~~~l~gw~~~Q~~sYfAl~Lp~~wwLiGLDsql------~g~id~~Q~~wf~~ 135 (598)
+.| ++.||||||...-.+ . .. .++....+. .+.++ +|.++|+|+.. .+..++.|.+|+ +
T Consensus 52 ~~p-~~~v~GNHD~~~~~~----~-~~----~~~~~~~~~---~~~~~-~~~~~g~~~~~~~~~~~~~~~~~~~l~~~-~ 116 (188)
T cd07392 52 GVP-VLAVPGNCDTPEILG----L-LT----SAGLNLHGK---VVEVG-GYTFVGIGGSNPTPFNTPIELSEEEIVSD-G 116 (188)
T ss_pred CCC-EEEEcCCCCCHHHHH----h-hh----cCcEecCCC---EEEEC-CEEEEEeCCCCCCCCCCccccCHHHHHHh-h
Confidence 445 999999999643211 1 11 112222231 33455 49999998632 345567889998 3
Q ss_pred HHHhhcCCCCeEEEEecCCCccc--cccccC--CCccchHHHHHhhhCCceeEEEcCccCCCc
Q 007562 136 LVKEQVGERDSVIIMTHEPNWLL--DWYFNN--VSGKNVKHLICDYLKGRCKLRIAGDMHHYM 194 (598)
Q Consensus 136 ~l~~~~~~~~~VIL~tHeP~w~~--~~~~~~--~~~~~v~~Li~~~l~~rV~L~LSGH~HhY~ 194 (598)
.++ ..+++++|+++|+|.+.. +..... .+...+.++++ +.+++++++||+|.-.
T Consensus 117 ~l~--~~~~~~~ilv~H~pp~~~~~d~~~~~~~~g~~~l~~li~---~~~~~~~l~GH~H~~~ 174 (188)
T cd07392 117 RLN--NLLAKNLILVTHAPPYGTAVDRVSGGFHVGSKAIRKFIE---ERQPLLCICGHIHESR 174 (188)
T ss_pred hhh--ccCCCCeEEEECCCCcCCcccccCCCCccCCHHHHHHHH---HhCCcEEEEecccccc
Confidence 333 356789999999999742 211111 11122333433 4688999999999743
No 18
>cd07383 MPP_Dcr2 Saccharomyces cerevisiae DCR2 phosphatase and related proteins, metallophosphatase domain. DCR2 phosphatase (Dosage-dependent Cell Cycle Regulator 2) functions together with DCR1 (Gid8) in a common pathway to accelerate initiation of DNA replication in Saccharomyces cerevisiae. Genetic analysis suggests that DCR1 functions upstream of DCR2. DCR2 interacts with and dephosphorylates Sic1, an inhibitor of mitotic cyclin/cyclin-dependent kinase complexes, which may serve to trigger the initiation of cell division. DCR2 belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAP
Probab=98.99 E-value=1.5e-09 Score=105.34 Aligned_cols=75 Identities=20% Similarity=0.066 Sum_probs=51.7
Q ss_pred cCCCCCHHHHHHHHHHHHhhc---CCCCeEEEEecCCCcccccccc----------C-C-CccchHHHHHhhh-CCceeE
Q 007562 121 LHCDIDVYQFKFFAELVKEQV---GERDSVIIMTHEPNWLLDWYFN----------N-V-SGKNVKHLICDYL-KGRCKL 184 (598)
Q Consensus 121 l~g~id~~Q~~wf~~~l~~~~---~~~~~VIL~tHeP~w~~~~~~~----------~-~-~~~~v~~Li~~~l-~~rV~L 184 (598)
..+.+++.|.+||++.+++.. ....+.+++.|+|.......+. + . ...+...+++.+. ..+|++
T Consensus 88 ~~g~l~~~ql~wL~~~l~~~~~~~~~~~~~l~f~H~P~~~~~~~~~~~~~~~g~~~d~~~~~~~~~~~~~~~~~~~~v~~ 167 (199)
T cd07383 88 GYDWIRPSQIEWFKETSAALKKKYGKPIPSLAFFHIPLPEYREVWEGKGKVPGINNEKVCCPKINSGLFKALLERGDVKG 167 (199)
T ss_pred CCCCCCHHHHHHHHHHHHHHhhccCCCCcceEEEecChHHHHhhhcccCCCCccCCcccCCCcCCcHHHHHHHHcCCeEE
Confidence 457788999999999987532 3568999999999876533221 1 1 1122334545554 578999
Q ss_pred EEcCccCCCcc
Q 007562 185 RIAGDMHHYMR 195 (598)
Q Consensus 185 ~LSGH~HhY~R 195 (598)
+++||+|.+..
T Consensus 168 v~~GH~H~~~~ 178 (199)
T cd07383 168 VFCGHDHGNDF 178 (199)
T ss_pred EEeCCCCCcce
Confidence 99999998643
No 19
>TIGR03767 P_acnes_RR metallophosphoesterase, PPA1498 family. This model describes a small collection of probable metallophosphoresterases, related to pfam00149 but with long inserts separating some of the shared motifs such that the homology is apparent only through multiple sequence alignment. Members of this protein family, in general, have a Sec-independent TAT (twin-arginine translocation) signal sequence, N-terminal to the region modeled by this alignment. Members include YP_056203.1 from Propionibacterium acnes KPA171202.
Probab=98.90 E-value=9.8e-09 Score=113.00 Aligned_cols=126 Identities=12% Similarity=0.178 Sum_probs=88.5
Q ss_pred CCCceEEEE-CCCcEEEEEeeccc-----CCCCCHHHHHHHHHHHHhhcCCCCeEEEEecCCCccccccccC-----CCc
Q 007562 99 QKKSYFALQ-LPKGWWVFGLDLAL-----HCDIDVYQFKFFAELVKEQVGERDSVIIMTHEPNWLLDWYFNN-----VSG 167 (598)
Q Consensus 99 Q~~sYfAl~-Lp~~wwLiGLDsql-----~g~id~~Q~~wf~~~l~~~~~~~~~VIL~tHeP~w~~~~~~~~-----~~~ 167 (598)
.+..||+.+ .++ |.+|+||++. .|.+++.|++||++.|++ .+++++||++|||.|..+....+ ...
T Consensus 289 ~G~~YYSFd~~gg-vrfIvLDSt~~~G~~~G~L~eeQL~WLeqeLa~--a~~k~VVVf~HHPp~s~g~~~~Dp~~pg~~~ 365 (496)
T TIGR03767 289 AGTGYYTFDIAGG-VRGISMDTTNRAGGDEGSLGQTQFKWIKDTLRA--SSDTLFVLFSHHTSWSMVNELTDPVDPGEKR 365 (496)
T ss_pred CCCceEEEEeECC-EEEEEEeCCCcCCCcCCccCHHHHHHHHHHHhc--CCCCCEEEEECCCCccccccccccccccccc
Confidence 367899999 665 9999999975 367899999999999975 56788999999999876432221 112
Q ss_pred cchHHHHHhhhCC-ceeEEEcCccCC-Ccc-eeecCCCCCcccceEEEecCCCccccccccCC
Q 007562 168 KNVKHLICDYLKG-RCKLRIAGDMHH-YMR-HSYVPSDGPVYVQHLLVNGCGGAFLHPTHVFS 227 (598)
Q Consensus 168 ~~v~~Li~~~l~~-rV~L~LSGH~Hh-Y~R-~~~~~~~g~~~~~~lIVsGGGGAfLhpth~~~ 227 (598)
.+.++|++.+.++ +|.++|+||+|. ..- +....+.+++.+--.|.++.-=-|-|+-|+++
T Consensus 366 ~n~~eLldLL~~ypnV~aVfsGHvH~n~i~~~~~~~~~~p~~gfweI~TaSlvdfPq~~Ri~E 428 (496)
T TIGR03767 366 HLGTELVSLLLEHPNVLAWVNGHTHSNKITAHRRVEGVGKDKGFWEINTASHIDFPQQGRIIE 428 (496)
T ss_pred cCHHHHHHHHhcCCCceEEEECCcCCCccccccCCCCCCCcCCeEEEeccccccCCCCceEEE
Confidence 2345666666665 799999999993 322 22122222333445688877777888888765
No 20
>TIGR03729 acc_ester putative phosphoesterase. Members of this protein family belong to the larger family pfam00149 (calcineurin-like phosphoesterase), a family largely defined by small motifs of metal-chelating residues. The subfamily in this model shows a good but imperfect co-occurrence in species with domain TIGR03715 that defines a novel class of signal peptide typical of the accessory secretory system.
Probab=98.87 E-value=5.1e-09 Score=104.67 Aligned_cols=67 Identities=18% Similarity=0.084 Sum_probs=41.7
Q ss_pred CHHHHHHHHHHHHhhcCCCCeEEEEecCCCccccc-------cccCC-CccchHHHHHhhhCCceeEEEcCccCCCc
Q 007562 126 DVYQFKFFAELVKEQVGERDSVIIMTHEPNWLLDW-------YFNNV-SGKNVKHLICDYLKGRCKLRIAGDMHHYM 194 (598)
Q Consensus 126 d~~Q~~wf~~~l~~~~~~~~~VIL~tHeP~w~~~~-------~~~~~-~~~~v~~Li~~~l~~rV~L~LSGH~HhY~ 194 (598)
.+.|.+|+++.+++ ..++++|++||+|+....- .+... ...+-+.+.+.+.+++++++++||+|.-.
T Consensus 148 ~~~~l~~l~~~l~~--~~~~~~ivvtH~pP~~~~~~~~~~~~~~~~~~~~~~s~~l~~li~~~~v~~~i~GH~H~~~ 222 (239)
T TIGR03729 148 TAIVLKQLKKQLNQ--LDNKQVIFVTHFVPHRDFIYVPMDHRRFDMFNAFLGSQHFGQLLVKYEIKDVIFGHLHRRF 222 (239)
T ss_pred HHHHHHHHHHHHHh--cCCCCEEEEEcccchHHHhcCCCCCcchhhhhhccChHHHHHHHHHhCCCEEEECCccCCC
Confidence 35789999999965 4557899999999754211 11110 01111223222335689999999999754
No 21
>PRK11340 phosphodiesterase YaeI; Provisional
Probab=98.84 E-value=2.7e-08 Score=101.95 Aligned_cols=132 Identities=13% Similarity=0.104 Sum_probs=78.9
Q ss_pred CCeEEecCCCCCCCCChH---HHHHhhcccCCCCcccCCCCCceEEEECCC-cEEEEEeecccCCCCCHHHHHHHHHHHH
Q 007562 63 GPQCYIIPGNHDWFDGLN---TFMRFICHKSWLGGWFMPQKKSYFALQLPK-GWWVFGLDLALHCDIDVYQFKFFAELVK 138 (598)
Q Consensus 63 ~p~~~~~~gnhd~~~gL~---aF~r~F~~~~~l~gw~~~Q~~sYfAl~Lp~-~wwLiGLDsql~g~id~~Q~~wf~~~l~ 138 (598)
.| +|+++||||++.+.. .+.+.+ . -.|+...++.+. .++..+ ..+|+|+|+-..+..+..
T Consensus 113 ~p-v~~V~GNHD~~~~~~~~~~~~~~l-~---~~gi~lL~n~~~-~i~~~~~~i~i~G~~d~~~~~~~~~---------- 176 (271)
T PRK11340 113 AP-TFACFGNHDRPVGTEKNHLIGETL-K---SAGITVLFNQAT-VIATPNRQFELVGTGDLWAGQCKPP---------- 176 (271)
T ss_pred CC-EEEecCCCCcccCccchHHHHHHH-H---hcCcEEeeCCeE-EEeeCCcEEEEEEecchhccCCChh----------
Confidence 45 999999999875432 222221 1 235666666554 455443 378999986433322211
Q ss_pred hhcCCCCeEEEEecCCCccccccccCCCccchHHHHHhhhCCceeEEEcCccCCCcce--------eec----CCCC--C
Q 007562 139 EQVGERDSVIIMTHEPNWLLDWYFNNVSGKNVKHLICDYLKGRCKLRIAGDMHHYMRH--------SYV----PSDG--P 204 (598)
Q Consensus 139 ~~~~~~~~VIL~tHeP~w~~~~~~~~~~~~~v~~Li~~~l~~rV~L~LSGH~HhY~R~--------~~~----~~~g--~ 204 (598)
+...++++.|+++|+|..... .....++|+||||||.=|=. .+. ...| .
T Consensus 177 ~~~~~~~~~IlL~H~P~~~~~-----------------~~~~~~dL~lsGHTHGGQi~lP~~~~~~~~~~~~~~~~G~~~ 239 (271)
T PRK11340 177 PASEANLPRLVLAHNPDSKEV-----------------MRDEPWDLMLCGHTHGGQLRVPLVGEPFAPVEDKRYVAGLNA 239 (271)
T ss_pred HhcCCCCCeEEEEcCCChhHh-----------------hccCCCCEEEeccccCCeEEccccCccccccccCcccCCcEE
Confidence 113447899999999976431 11356899999999954321 111 1112 2
Q ss_pred cccceEEEecCCCccccccccCCC
Q 007562 205 VYVQHLLVNGCGGAFLHPTHVFSN 228 (598)
Q Consensus 205 ~~~~~lIVsGGGGAfLhpth~~~~ 228 (598)
....+++||-|-|.. .|.|...+
T Consensus 240 ~~~~~l~Vs~G~G~~-~p~R~~~~ 262 (271)
T PRK11340 240 FGERQIYTTRGVGSL-YGLRLNCR 262 (271)
T ss_pred eCCcEEEEeCCccCC-cCCcccCC
Confidence 224578898888874 58887544
No 22
>cd07385 MPP_YkuE_C Bacillus subtilis YkuE and related proteins, C-terminal metallophosphatase domain. YkuE is an uncharacterized Bacillus subtilis protein with a C-terminal metallophosphatase domain and an N-terminal twin-arginine (RR) motif. An RR-signal peptide derived from the Bacillus subtilis YkuE protein can direct Tat-dependent secretion of agarase in Streptomyces lividans. This is an indication that YkuE is transported by the Bacillus subtilis Tat (Twin-arginine translocation) pathway machinery. YkuE belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-dia
Probab=98.77 E-value=2.9e-08 Score=96.77 Aligned_cols=137 Identities=18% Similarity=0.167 Sum_probs=81.5
Q ss_pred CCeEEecCCCCCCCCChHHHHHhhcccCCCCcccCCCCCceEEEECCC-cEEEEEeecccCCCCCHHHHHHHHHHHHhhc
Q 007562 63 GPQCYIIPGNHDWFDGLNTFMRFICHKSWLGGWFMPQKKSYFALQLPK-GWWVFGLDLALHCDIDVYQFKFFAELVKEQV 141 (598)
Q Consensus 63 ~p~~~~~~gnhd~~~gL~aF~r~F~~~~~l~gw~~~Q~~sYfAl~Lp~-~wwLiGLDsql~g~id~~Q~~wf~~~l~~~~ 141 (598)
.| +++++||||++.+..........+ .++....+.+ ..++... ...++|++.... +.+.+.+.++ +.
T Consensus 64 ~~-v~~v~GNHD~~~~~~~~~~~~l~~---~~v~~L~~~~-~~~~~~~~~i~i~G~~~~~~------~~~~~~~~~~-~~ 131 (223)
T cd07385 64 LG-VYAVLGNHDYYSGDEENWIEALES---AGITVLRNES-VEISVGGATIGIAGVDDGLG------RRPDLEKALK-GL 131 (223)
T ss_pred CC-EEEECCCcccccCchHHHHHHHHH---cCCEEeecCc-EEeccCCeEEEEEeccCccc------cCCCHHHHHh-CC
Confidence 35 999999999987755431112211 2344333433 3444432 266777654321 2234444443 35
Q ss_pred CCCCeEEEEecCCCccccccccCCCccchHHHHHhhhCCceeEEEcCccCCCcceeecCC------------CC--Cccc
Q 007562 142 GERDSVIIMTHEPNWLLDWYFNNVSGKNVKHLICDYLKGRCKLRIAGDMHHYMRHSYVPS------------DG--PVYV 207 (598)
Q Consensus 142 ~~~~~VIL~tHeP~w~~~~~~~~~~~~~v~~Li~~~l~~rV~L~LSGH~HhY~R~~~~~~------------~g--~~~~ 207 (598)
.+++..|+++|.|...... ...+++++||||+|..|-..+... .| ....
T Consensus 132 ~~~~~~I~l~H~P~~~~~~-----------------~~~~~dl~l~GHtHggqi~~~~~~~~~~~~~~~~~~~G~~~~~~ 194 (223)
T cd07385 132 DEDDPNILLAHQPDTAEEA-----------------AAWGVDLQLSGHTHGGQIRLPGIGPLVLSKLARPYDYGLYRKGG 194 (223)
T ss_pred CCCCCEEEEecCCChhHHh-----------------cccCccEEEeccCCCCEEeccccccccchhhcCcccceEEEECC
Confidence 6678999999999654311 145799999999996654432221 11 1112
Q ss_pred ceEEEecCCCccccccccCCC
Q 007562 208 QHLLVNGCGGAFLHPTHVFSN 228 (598)
Q Consensus 208 ~~lIVsGGGGAfLhpth~~~~ 228 (598)
.+++|+-|-|....|.|...+
T Consensus 195 ~~~~Vs~G~G~~~~~~R~~~~ 215 (223)
T cd07385 195 SQLYVSRGLGTWGPPLRLGCP 215 (223)
T ss_pred EEEEEcCCccCCCCchhcCCC
Confidence 478999999988778887654
No 23
>KOG2679 consensus Purple (tartrate-resistant) acid phosphatase [Posttranslational modification, protein turnover, chaperones]
Probab=98.75 E-value=1.6e-08 Score=103.97 Aligned_cols=184 Identities=16% Similarity=0.164 Sum_probs=115.8
Q ss_pred eeeeceeeecCCChhhHHhhhcchhhhhcCCCCCCCCCccccCCCCCCCCCcccccCCCCeEEecCCCCCCCCChHHHHH
Q 007562 5 RFVWIHCRYPNPSAFTYERRLFRPFEYALQPPPWYKKDHVAVNKPEVPSGVPELKQYDGPQCYIIPGNHDWFDGLNTFMR 84 (598)
Q Consensus 5 ~~~~gDlvYp~~s~~~Y~~rf~~Py~~Al~~~~~~~~~~i~~~~p~~p~~~~~~~~~~~p~~~~~~gnhd~~~gL~aF~r 84 (598)
-.-|||=.|-+|-...+..||.+-|+.-.-.| .+ ..| .|.|.||||+.-..++++.
T Consensus 79 vlS~GDNfYd~G~~~~~Dp~Fq~sF~nIYT~p--------------------SL---Qkp-Wy~vlGNHDyrGnV~AQls 134 (336)
T KOG2679|consen 79 VLSTGDNFYDTGLTSENDPRFQDSFENIYTAP--------------------SL---QKP-WYSVLGNHDYRGNVEAQLS 134 (336)
T ss_pred EEecCCcccccCCCCCCChhHHhhhhhcccCc--------------------cc---ccc-hhhhccCccccCchhhhhh
Confidence 34589999999999999999999999754222 13 346 9999999999988888876
Q ss_pred hhcccCCCCcccCCCCCceEEEECCCcEEEEEeeccc----------------CC-----CCCHHHHHHHHHHHHhhcCC
Q 007562 85 FICHKSWLGGWFMPQKKSYFALQLPKGWWVFGLDLAL----------------HC-----DIDVYQFKFFAELVKEQVGE 143 (598)
Q Consensus 85 ~F~~~~~l~gw~~~Q~~sYfAl~Lp~~wwLiGLDsql----------------~g-----~id~~Q~~wf~~~l~~~~~~ 143 (598)
-...+. -..|- -++||+. +... .=+.+.|... .+ .+-+.|..||+..+++ ..
T Consensus 135 ~~l~~~-d~RW~--c~rsf~~-~ae~-ve~f~v~~~~f~~d~~~~~~~~~ydw~~v~PR~~~~~~~l~~le~~L~~--S~ 207 (336)
T KOG2679|consen 135 PVLRKI-DKRWI--CPRSFYV-DAEI-VEMFFVDTTPFMDDTFTLCTDDVYDWRGVLPRVKYLRALLSWLEVALKA--SR 207 (336)
T ss_pred HHHHhh-cccee--cccHHhh-ccee-eeeeccccccchhhheecccccccccccCChHHHHHHHHHHHHHHHHHH--hh
Confidence 222111 11121 2333321 1100 0012222110 01 1123778899998876 66
Q ss_pred CCeEEEEecCCCccccccccCCCccchHHHHHhhh-CCceeEEEcCccCCCcceeecCCCCCcccceEEEecCCCccccc
Q 007562 144 RDSVIIMTHEPNWLLDWYFNNVSGKNVKHLICDYL-KGRCKLRIAGDMHHYMRHSYVPSDGPVYVQHLLVNGCGGAFLHP 222 (598)
Q Consensus 144 ~~~VIL~tHeP~w~~~~~~~~~~~~~v~~Li~~~l-~~rV~L~LSGH~HhY~R~~~~~~~g~~~~~~lIVsGGGGAfLhp 222 (598)
.+.+|++-|||-|+.+.+.. +- .+++.+..+| ...|+|.++||.|.-|..... +++.+++|||||---=-.
T Consensus 208 a~wkiVvGHh~i~S~~~HG~--T~-eL~~~LlPiL~~n~VdlY~nGHDHcLQhis~~-----e~~iqf~tSGagSkaw~g 279 (336)
T KOG2679|consen 208 AKWKIVVGHHPIKSAGHHGP--TK-ELEKQLLPILEANGVDLYINGHDHCLQHISSP-----ESGIQFVTSGAGSKAWRG 279 (336)
T ss_pred cceEEEecccceehhhccCC--hH-HHHHHHHHHHHhcCCcEEEecchhhhhhccCC-----CCCeeEEeeCCcccccCC
Confidence 78999999999999865432 11 2333334444 789999999999987776532 235689999887654444
Q ss_pred cccCC
Q 007562 223 THVFS 227 (598)
Q Consensus 223 th~~~ 227 (598)
|+..|
T Consensus 280 ~~~~~ 284 (336)
T KOG2679|consen 280 TDHNP 284 (336)
T ss_pred CccCC
Confidence 45544
No 24
>cd07400 MPP_YydB Bacillus subtilis YydB and related proteins, metallophosphatase domain. YydB (BSU40220) is an uncharacterized Bacillus subtilis protein that belongs to the following Bacillus subtilis gene cluster yydB-yydC-yydD-yydG-yydH-yydI-yydJ. YydB belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productiv
Probab=98.64 E-value=1.1e-07 Score=87.04 Aligned_cols=50 Identities=12% Similarity=-0.027 Sum_probs=33.8
Q ss_pred EEEecCCCccccccccCCCccchHHHHHhhhCCceeEEEcCccCCCcceee
Q 007562 148 IIMTHEPNWLLDWYFNNVSGKNVKHLICDYLKGRCKLRIAGDMHHYMRHSY 198 (598)
Q Consensus 148 IL~tHeP~w~~~~~~~~~~~~~v~~Li~~~l~~rV~L~LSGH~HhY~R~~~ 198 (598)
|+++|+|.+......... ..+.+.+.+.+.+.+++++++||+|.......
T Consensus 81 iv~~Hhp~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~l~GH~H~~~~~~~ 130 (144)
T cd07400 81 IVVLHHPLVPPPGSGRER-LLDAGDALKLLAEAGVDLVLHGHKHVPYVGNI 130 (144)
T ss_pred EEEecCCCCCCCcccccc-CCCHHHHHHHHHHcCCCEEEECCCCCcCeeec
Confidence 899999998774432211 11444555555578999999999998665543
No 25
>cd07388 MPP_Tt1561 Thermus thermophilus Tt1561 and related proteins, metallophosphatase domain. This family includes bacterial proteins related to Tt1561 (also known as Aq1956 in Aquifex aeolicus), an uncharacterized Thermus thermophilus protein. The conserved domain present in members of this family belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets,
Probab=98.60 E-value=4.4e-07 Score=91.54 Aligned_cols=144 Identities=15% Similarity=0.125 Sum_probs=83.0
Q ss_pred eeeeceeeecCCChhhHHhhhcchhhhhcCCCCCCCCCccccCCCCCCCCCcccccCCCCeEEecCCCCCCCCChHHHHH
Q 007562 5 RFVWIHCRYPNPSAFTYERRLFRPFEYALQPPPWYKKDHVAVNKPEVPSGVPELKQYDGPQCYIIPGNHDWFDGLNTFMR 84 (598)
Q Consensus 5 ~~~~gDlvYp~~s~~~Y~~rf~~Py~~Al~~~~~~~~~~i~~~~p~~p~~~~~~~~~~~p~~~~~~gnhd~~~gL~aF~r 84 (598)
-+++||++...+..+.|.+ +++-.+ ....| +++||||||- .+..+++
T Consensus 35 vv~~GDl~~~g~~~~~~~~-~l~~l~-----------------------------~l~~p-v~~V~GNhD~--~v~~~l~ 81 (224)
T cd07388 35 IVLIGNLLPKAAKSEDYAA-FFRILG-----------------------------EAHLP-TFYVPGPQDA--PLWEYLR 81 (224)
T ss_pred EEECCCCCCCCCCHHHHHH-HHHHHH-----------------------------hcCCc-eEEEcCCCCh--HHHHHHH
Confidence 4689999998766666652 333222 12345 9999999995 2444444
Q ss_pred -hhcccC-CCCcccCCCCCceEEEECCCcEEEEEeecccCC--CCCHHHH----HHHHH----HHHhhcCCCCeEEEEec
Q 007562 85 -FICHKS-WLGGWFMPQKKSYFALQLPKGWWVFGLDLALHC--DIDVYQF----KFFAE----LVKEQVGERDSVIIMTH 152 (598)
Q Consensus 85 -~F~~~~-~l~gw~~~Q~~sYfAl~Lp~~wwLiGLDsql~g--~id~~Q~----~wf~~----~l~~~~~~~~~VIL~tH 152 (598)
.|.+.. .+..+....+ .++...+..++|++-.... ..++.|. .|+.+ .+.+ ...++.||++|
T Consensus 82 ~~~~~~~~~p~~~~lh~~----~~~~~g~~~~~GlGGs~~~~~e~sE~e~~~~~~~~~~~~l~~~~~--~~~~~~VLv~H 155 (224)
T cd07388 82 EAYNAELVHPEIRNVHET----FAFWRGPYLVAGVGGEIADEGEPEEHEALRYPAWVAEYRLKALWE--LKDYRKVFLFH 155 (224)
T ss_pred HHhcccccCccceecCCC----eEEecCCeEEEEecCCcCCCCCcCHHHHhhhhhhHHHHHHHHHHh--CCCCCeEEEEC
Confidence 332111 1122222222 3344444789999844322 3345552 44333 3322 24679999999
Q ss_pred CCCccccccccCCCccchHHHHHhhhCCceeEEEcCccCC
Q 007562 153 EPNWLLDWYFNNVSGKNVKHLICDYLKGRCKLRIAGDMHH 192 (598)
Q Consensus 153 eP~w~~~~~~~~~~~~~v~~Li~~~l~~rV~L~LSGH~Hh 192 (598)
.|++-.+.. +.+...++++|++ .++++.++||+||
T Consensus 156 ~PP~g~g~~--h~GS~alr~~I~~---~~P~l~i~GHih~ 190 (224)
T cd07388 156 TPPYHKGLN--EQGSHEVAHLIKT---HNPLVVLVGGKGQ 190 (224)
T ss_pred CCCCCCCCC--ccCHHHHHHHHHH---hCCCEEEEcCCce
Confidence 999876321 1233345555554 6799999999994
No 26
>COG1408 Predicted phosphohydrolases [General function prediction only]
Probab=98.52 E-value=3.8e-07 Score=94.94 Aligned_cols=144 Identities=17% Similarity=0.122 Sum_probs=80.7
Q ss_pred EEecCCCCCCCCChHHHH-HhhcccC-C---CCcccCCCCCceEEEECCCcEEEEEeecccCCCCCHHHHHH---HHHHH
Q 007562 66 CYIIPGNHDWFDGLNTFM-RFICHKS-W---LGGWFMPQKKSYFALQLPKGWWVFGLDLALHCDIDVYQFKF---FAELV 137 (598)
Q Consensus 66 ~~~~~gnhd~~~gL~aF~-r~F~~~~-~---l~gw~~~Q~~sYfAl~Lp~~wwLiGLDsql~g~id~~Q~~w---f~~~l 137 (598)
+|+|.|||||+....... .....+. . -.+....+..+-.--....+-|..|+|++..+.. ..+.++ .++.+
T Consensus 108 v~av~GNHd~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~-~~~~~~~~~~~~~~ 186 (284)
T COG1408 108 VFAVLGNHDYGVDRSNVYIGDLLEELGRVVLRNEIAVIDLLALRIEVGGLDLYLAGVEDILAGLP-LAPFTIGLDIAEAL 186 (284)
T ss_pred EEEEecccccccccccchhhhhhhhcceeeecccchhcccccccccccccccccccCchHHhhCc-ccccccccchhhhh
Confidence 999999999998866532 1111111 0 0011111111111112233367888877765544 111111 22222
Q ss_pred HhhcCCCCeEEEEecCCCccccccccCCCccchHHHHHhhhCCceeEEEcCccCCCcceee-------cC------CCC-
Q 007562 138 KEQVGERDSVIIMTHEPNWLLDWYFNNVSGKNVKHLICDYLKGRCKLRIAGDMHHYMRHSY-------VP------SDG- 203 (598)
Q Consensus 138 ~~~~~~~~~VIL~tHeP~w~~~~~~~~~~~~~v~~Li~~~l~~rV~L~LSGH~HhY~R~~~-------~~------~~g- 203 (598)
.+..++.+.||.+|+|.....- ..+.++|+||||+|.=|=.-+ .. .++
T Consensus 187 -~~~~~~~~~IlL~H~P~~~~~~-----------------~~~~~dLvLSGHTHGGQi~~p~~~~l~~~~~~~~~~~g~~ 248 (284)
T COG1408 187 -KQLDEDLPGILLSHEPDIILQL-----------------RLYGVDLVLSGHTHGGQIRLPLWGPLVTNALSGRYRAGGL 248 (284)
T ss_pred -ccccccccceEeccCCceehhh-----------------ccCcceEEEeccccCCeEEeecccccccccccccccccce
Confidence 4577889999999999775521 134799999999994332211 11 112
Q ss_pred CcccceEEEecCCCccccccccCCC
Q 007562 204 PVYVQHLLVNGCGGAFLHPTHVFSN 228 (598)
Q Consensus 204 ~~~~~~lIVsGGGGAfLhpth~~~~ 228 (598)
.+-..+++||.|-|..--|.|...+
T Consensus 249 ~~~~~~lyVSrGlG~~~~p~R~~~~ 273 (284)
T COG1408 249 RQFGAQLYVSRGLGTTGPPIRLGCP 273 (284)
T ss_pred ecCCceEEEeCCcCCCCCCcccCCC
Confidence 1112369999999998789888765
No 27
>cd07404 MPP_MS158 Microscilla MS158 and related proteins, metallophosphatase domain. MS158 is an uncharacterized Microscilla protein with a metallophosphatase domain. Microscilla proteins MS152, and MS153 are also included in this family. The domain present in members of this family belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is t
Probab=98.46 E-value=8.5e-07 Score=83.38 Aligned_cols=52 Identities=21% Similarity=0.132 Sum_probs=32.3
Q ss_pred CeEEEEecCCCccccccccCC-Cccc-h-HHHHHhh-hCCceeEEEcCccCCCcce
Q 007562 145 DSVIIMTHEPNWLLDWYFNNV-SGKN-V-KHLICDY-LKGRCKLRIAGDMHHYMRH 196 (598)
Q Consensus 145 ~~VIL~tHeP~w~~~~~~~~~-~~~~-v-~~Li~~~-l~~rV~L~LSGH~HhY~R~ 196 (598)
+++|+++|+|+...+..+.+. ...+ . ...+.++ ...+|+++++||+|.....
T Consensus 97 ~~~vv~~HhpP~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~~~i~GH~H~~~~~ 152 (166)
T cd07404 97 GKTVVVTHHAPSPLSLAPQYGDSLVNAAFAVDLDDLILADPIDLWIHGHTHFNFDY 152 (166)
T ss_pred CCEEEEeCCCCCccccCccccCCCcchhhhhccHhHHhhcCCCEEEECCccccceE
Confidence 699999999998764332211 1111 1 1112222 3678999999999976444
No 28
>cd00840 MPP_Mre11_N Mre11 nuclease, N-terminal metallophosphatase domain. Mre11 (also known as SbcD in Escherichia coli) is a subunit of the MRX protein complex. This complex includes: Mre11, Rad50, and Xrs2/Nbs1, and plays a vital role in several nuclear processes including DNA double-strand break repair, telomere length maintenance, cell cycle checkpoint control, and meiotic recombination, in eukaryotes. During double-strand break repair, the MRX complex is required to hold the two ends of a broken chromosome together. In vitro studies show that Mre11 has 3'-5' exonuclease activity on dsDNA templates and endonuclease activity on dsDNA and ssDNA templates. In addition to the N-terminal phosphatase domain, the eukaryotic MRE11 members of this family have a C-terminal DNA binding domain (not included in this alignment model). MRE11-like proteins are found in prokaryotes and archaea was well as in eukaryotes. Mre11 belongs to the metallophosphatase (MPP) superfamily. MPPs are functi
Probab=98.25 E-value=4.6e-06 Score=80.71 Aligned_cols=122 Identities=16% Similarity=0.075 Sum_probs=63.5
Q ss_pred eEEecCCCCCCCCChHHHHHhhcccCCCCcccCC----CCCceEEEEC-CCcEEEEEeecccCCCCCHHHHHHHHHHHHh
Q 007562 65 QCYIIPGNHDWFDGLNTFMRFICHKSWLGGWFMP----QKKSYFALQL-PKGWWVFGLDLALHCDIDVYQFKFFAELVKE 139 (598)
Q Consensus 65 ~~~~~~gnhd~~~gL~aF~r~F~~~~~l~gw~~~----Q~~sYfAl~L-p~~wwLiGLDsql~g~id~~Q~~wf~~~l~~ 139 (598)
++++++||||.+.+........ ...++... .......... ..+.-|+|++...... ...+.++.++.. .
T Consensus 78 ~v~~~~GNHD~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~g~~~~~~~~-~~~~~~~~~~~~-~ 151 (223)
T cd00840 78 PVFIIAGNHDSPSRLGALSPLL----ALSGLHLVGVEEDVLTPLLLPKGGTGVAIYGLPYLRRSR-LRDLLADAELRP-R 151 (223)
T ss_pred CEEEecCCCCCccccccccchH----hhCcEEEEcccCcceeEEEeccCCeEEEEEECCCCCHHH-HHHHHHHHHHHh-h
Confidence 3999999999887644332211 11122211 1111112222 2347788886432111 112222223333 3
Q ss_pred hcCCCCeEEEEecCCCccccccccCCCccchHHHHHhhhCCceeEEEcCccCCCcce
Q 007562 140 QVGERDSVIIMTHEPNWLLDWYFNNVSGKNVKHLICDYLKGRCKLRIAGDMHHYMRH 196 (598)
Q Consensus 140 ~~~~~~~VIL~tHeP~w~~~~~~~~~~~~~v~~Li~~~l~~rV~L~LSGH~HhY~R~ 196 (598)
+..++...|+++|.|.......... . .......+...+++++++||+|..+..
T Consensus 152 ~~~~~~~~Il~~H~~~~~~~~~~~~-~---~~~~~~~~~~~~~d~v~~GH~H~~~~~ 204 (223)
T cd00840 152 PLDPDDFNILLLHGGVAGAGPSDSE-R---APFVPEALLPAGFDYVALGHIHRPQII 204 (223)
T ss_pred ccCCCCcEEEEEeeeeecCCCCccc-c---cccCcHhhcCcCCCEEECCCcccCeee
Confidence 3567889999999997644321110 0 111223444678999999999986543
No 29
>cd07379 MPP_239FB Homo sapiens 239FB and related proteins, metallophosphatase domain. 239FB (Fetal brain protein 239) is thought to play a role in central nervous system development, but its specific role in unknown. 239FB is expressed predominantly in human fetal brain from a gene located in the chromosome 11p13 region associated with the mental retardation component of the WAGR (Wilms tumor, Aniridia, Genitourinary anomalies, Mental retardation) syndrome. Orthologous brp-like (brain protein 239-like) proteins have been identified in the invertebrate amphioxus group and in vertebrates. 239FB belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzyme
Probab=98.11 E-value=6.9e-06 Score=75.09 Aligned_cols=51 Identities=22% Similarity=0.240 Sum_probs=30.0
Q ss_pred CCeEEEEecCCCccccccccCCCccchHHHHHhhhCCceeEEEcCccCCCc
Q 007562 144 RDSVIIMTHEPNWLLDWYFNNVSGKNVKHLICDYLKGRCKLRIAGDMHHYM 194 (598)
Q Consensus 144 ~~~VIL~tHeP~w~~~~~~~~~~~~~v~~Li~~~l~~rV~L~LSGH~HhY~ 194 (598)
+++.|+++|.|.+....+.........+.+.+.+...++++.++||+|...
T Consensus 67 ~~~~ilv~H~~p~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~GH~H~~~ 117 (135)
T cd07379 67 EDTDILVTHGPPYGHLDLVSSGQRVGCEELLNRVQRVRPKLHVFGHIHEGY 117 (135)
T ss_pred CCCEEEEECCCCCcCccccccCcccCCHHHHHHHHHHCCcEEEEcCcCCcC
Confidence 457789999998765432211000111223233335678999999999753
No 30
>cd00838 MPP_superfamily metallophosphatase superfamily, metallophosphatase domain. Metallophosphatases (MPPs), also known as metallophosphoesterases, phosphodiesterases (PDEs), binuclear metallophosphoesterases, and dimetal-containing phosphoesterases (DMPs), represent a diverse superfamily of enzymes with a conserved domain containing an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. This superfamily includes: the phosphoprotein phosphatases (PPPs), Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productive me
Probab=98.06 E-value=9e-06 Score=70.14 Aligned_cols=51 Identities=22% Similarity=0.189 Sum_probs=33.6
Q ss_pred EEEecCCCccccccccCCCccchHHHHHhhhCCceeEEEcCccCCCcceee
Q 007562 148 IIMTHEPNWLLDWYFNNVSGKNVKHLICDYLKGRCKLRIAGDMHHYMRHSY 198 (598)
Q Consensus 148 IL~tHeP~w~~~~~~~~~~~~~v~~Li~~~l~~rV~L~LSGH~HhY~R~~~ 198 (598)
|+++|.|.+................+.+.+...++++.++||+|.++++..
T Consensus 70 i~~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GH~H~~~~~~~ 120 (131)
T cd00838 70 ILLTHGPPYDPLDELSPDEDPGSEALLELLEKYGVDLVLSGHTHVYERREP 120 (131)
T ss_pred EEEeccCCCCCchhhcccchhhHHHHHHHHHHhCCCEEEeCCeeccccccC
Confidence 999999999885533221111112233333367899999999999888763
No 31
>TIGR03768 RPA4764 metallophosphoesterase, RPA4764 family. This model describes a small collection of probable metallophosphoresterases, related to pfam00149. Members of this protein family usually have a Sec-independent TAT (twin-arginine translocation) signal sequence, N-terminal to the region modeled by this alignment. This model and TIGR03767 divide a narrow clade of pfam00149-related enzymes.
Probab=97.97 E-value=2.7e-05 Score=85.89 Aligned_cols=91 Identities=18% Similarity=0.122 Sum_probs=57.2
Q ss_pred CCceEEEECCCcE--EEEEeeccc-----------CCCCCHHHHHHHHHHHHhhcCCCCe-EEEEecCCCcc-ccccccC
Q 007562 100 KKSYFALQLPKGW--WVFGLDLAL-----------HCDIDVYQFKFFAELVKEQVGERDS-VIIMTHEPNWL-LDWYFNN 164 (598)
Q Consensus 100 ~~sYfAl~Lp~~w--wLiGLDsql-----------~g~id~~Q~~wf~~~l~~~~~~~~~-VIL~tHeP~w~-~~~~~~~ 164 (598)
..-||+.+.-.+| .+|+||+.. .|.+|++|++||++.|++ .+++++ ||++.|.|... .......
T Consensus 291 G~~yYsFd~~g~vplrvIvLDSt~~~~~~s~pG~~~G~Ld~eQLaWLe~~La~-a~a~~p~VVV~hHpPi~t~gi~~md~ 369 (492)
T TIGR03768 291 DFACYSFVPKSDVPLKVIVLDDTQSEHDGSHDIHGHGSLDAKRWDWLKAELAR-GQADGQLMIIAAHIPIAVSPIGSEME 369 (492)
T ss_pred CcceeEEecCCCcceEEEEECCCccccccCCCCCcceeeCHHHHHHHHHHHHh-CcCCCceEEEEeCCCcccCCccchhh
Confidence 3448999953335 999999864 356899999999999975 332444 66666666664 2111100
Q ss_pred ---------CCccch---HHHHHhhhCC-ceeEEEcCccC
Q 007562 165 ---------VSGKNV---KHLICDYLKG-RCKLRIAGDMH 191 (598)
Q Consensus 165 ---------~~~~~v---~~Li~~~l~~-rV~L~LSGH~H 191 (598)
....+. .+|++.+.++ +|.++||||+|
T Consensus 370 w~~~~~~~~~~L~n~~~~~eLlaLL~~hPnVla~LsGHvH 409 (492)
T TIGR03768 370 WWLGAADANPDLQNAVSLTGLVTTLQKYPNLLMWIAGHRH 409 (492)
T ss_pred hccccccccccccccccHHHHHHHHhcCCCeEEEEcCCcc
Confidence 001111 2444444444 79999999999
No 32
>cd08166 MPP_Cdc1_like_1 uncharacterized subgroup related to Saccharomyces cerevisiae CDC1, metallophosphatase domain. A functionally uncharacterized subgroup related to the metallophosphatase domain of Saccharomyces cerevisiae Cdc1, S. cerevisiae Ted1 and human MPPE1. Cdc1 is an endoplasmic reticulum-localized transmembrane lipid phosphatase and is a subunit of DNA polymerase delta. TED1 (trafficking of Emp24p/Erv25p-dependent cargo disrupted 1), acts together with Emp24p and Erv25p in cargo exit from the ER. The MPPE1 gene is a candidate susceptibility gene for Bipolar disorder. Proteins in this uncharacterized subgroup belong to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like R
Probab=97.63 E-value=0.00017 Score=71.73 Aligned_cols=43 Identities=16% Similarity=0.052 Sum_probs=30.9
Q ss_pred EEEecCCCccccccccCCCccchHHHHHhhhCCceeEEEcCccCCCcceeecC
Q 007562 148 IIMTHEPNWLLDWYFNNVSGKNVKHLICDYLKGRCKLRIAGDMHHYMRHSYVP 200 (598)
Q Consensus 148 IL~tHeP~w~~~~~~~~~~~~~v~~Li~~~l~~rV~L~LSGH~HhY~R~~~~~ 200 (598)
|+++|-|.+..+. . .+...+...++.+++|||.|.+..++...
T Consensus 112 i~lsH~P~~~~~~-------~---~~~~~~~~~~p~~Ifs~H~H~s~~~~~~~ 154 (195)
T cd08166 112 IMLSHVPLLAEGG-------Q---ALKHVVTDLDPDLIFSAHRHKSSIFMYDR 154 (195)
T ss_pred eeeeccccccccc-------H---HHHHHHHhcCceEEEEcCccceeeEEeec
Confidence 9999999997522 1 22222225689999999999988887553
No 33
>cd07384 MPP_Cdc1_like Saccharomyces cerevisiae CDC1 and related proteins, metallophosphatase domain. Cdc1 (also known as XlCdc1 in Xenopus laevis) is an endoplasmic reticulum-localized transmembrane lipid phosphatase with a metallophosphatase domain facing the ER lumen. In budding yeast, the gene encoding CDC1 is essential while nonlethal mutations cause defects in Golgi inheritance and actin polarization. Cdc1 mutant cells accumulate an unidentified phospholipid, suggesting that Cdc1 is a lipid phosphatase. Cdc1 mutant cells also have highly elevated intracellular calcium levels suggesting a possible role for Cdc1 in calcium regulation. The 5' flanking region of Cdc1 is a regulatory region with conserved binding site motifs for AP1, AP2, Sp1, NF-1 and CREB. DNA polymerase delta consists of at least four subunits - Pol3, Cdc1, Cdc27, and Cdm1. This group also contains Saccharomyces cerevisiae TED1 (Trafficking of Emp24p/Erv25p-dependent cargo disrupted 1), which acts together wit
Probab=97.59 E-value=0.00021 Score=68.93 Aligned_cols=35 Identities=23% Similarity=0.258 Sum_probs=26.2
Q ss_pred EEEecCCCccccccccCCCccchHHHHHhhhCCceeEEEcCccCCCcceeecC
Q 007562 148 IIMTHEPNWLLDWYFNNVSGKNVKHLICDYLKGRCKLRIAGDMHHYMRHSYVP 200 (598)
Q Consensus 148 IL~tHeP~w~~~~~~~~~~~~~v~~Li~~~l~~rV~L~LSGH~HhY~R~~~~~ 200 (598)
|+++|+|.+. ++. +.++.++||||+|.+.+.....
T Consensus 119 i~l~H~p~~~---------------~~~---~~~~~~~lsGH~H~~~~~~~~~ 153 (171)
T cd07384 119 ILLTHIPLYR---------------LLD---TIKPVLILSGHDHDQCEVVHSS 153 (171)
T ss_pred eeEECCccHH---------------HHh---ccCceEEEeCcccCCeEEEecC
Confidence 9999999753 111 3568899999999987776553
No 34
>cd08164 MPP_Ted1 Saccharomyces cerevisiae Ted1 and related proteins, metallophosphatase domain. Saccharomyces cerevisiae Ted1 (trafficking of Emp24p/Erv25p-dependent cargo disrupted 1) is a metallophosphatase domain-containing protein which acts together with Emp24p and Erv25p in cargo exit from the ER. Ted1 belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the
Probab=97.46 E-value=0.00025 Score=70.52 Aligned_cols=32 Identities=28% Similarity=0.513 Sum_probs=24.4
Q ss_pred EEEecCCCccccccccCCCccchHHHHHhhhCCceeEEEcCccCCCccee
Q 007562 148 IIMTHEPNWLLDWYFNNVSGKNVKHLICDYLKGRCKLRIAGDMHHYMRHS 197 (598)
Q Consensus 148 IL~tHeP~w~~~~~~~~~~~~~v~~Li~~~l~~rV~L~LSGH~HhY~R~~ 197 (598)
|+++|+|.+.. ....+++++||||+|.-+.+.
T Consensus 129 ilL~H~P~~~~------------------~~~~~~dl~lSGHtHgGqi~~ 160 (193)
T cd08164 129 ILLTHVPLYKI------------------FLEGKPGLILTGHDHEGCDYQ 160 (193)
T ss_pred EEEEcccceec------------------cccCCCCEEEeCccCCCeEEE
Confidence 99999998752 013478899999999866654
No 35
>cd07397 MPP_DevT Myxococcus xanthus DevT and related proteins, metallophosphatase domain. DevT is a component in the C-signal response pathway in Myxococcus xanthus that stimulates the developmentally regulated expression of the FruA response regulator protein and is required for methylation of FrzCD during fruiting body formation. DevT mutants having an in-frame deletion in the devT gene, display delayed aggregation and a cell autonomous sporulation defect. DevT belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomy
Probab=97.37 E-value=0.0011 Score=67.91 Aligned_cols=58 Identities=19% Similarity=0.252 Sum_probs=36.4
Q ss_pred hcCCCCeEEEEecCCCccccccccC--------CC---cc-chHHHHHhhh-CCceeEEEcCccCCCccee
Q 007562 140 QVGERDSVIIMTHEPNWLLDWYFNN--------VS---GK-NVKHLICDYL-KGRCKLRIAGDMHHYMRHS 197 (598)
Q Consensus 140 ~~~~~~~VIL~tHeP~w~~~~~~~~--------~~---~~-~v~~Li~~~l-~~rV~L~LSGH~HhY~R~~ 197 (598)
.+.++.+.||++|.+.--.+...++ .+ ++ .+.+-+..+. +.+++|++.||+||--|+.
T Consensus 142 ~~~~~~~~VliaH~~~~G~g~~~~~~cg~d~~~~~~~~G~~~l~~ai~~~~~~~~~~l~~fGH~H~~l~~~ 212 (238)
T cd07397 142 KAPPDLPLILLAHNGPSGLGSDAEDPCGRDWKPPGGDWGDPDLALAISQIQQGRQVPLVVFGHMHHRLRRG 212 (238)
T ss_pred hcCCCCCeEEEeCcCCcCCCcccccccccccCCcCCCCCCHHHHHHHHHHhccCCCCEEEeCCccCccccc
Confidence 4678899999999998655311111 11 11 1222233333 5668999999999976664
No 36
>cd07406 MPP_CG11883_N Drosophila melanogaster CG11883 and related proteins, N-terminal metallophosphatase domain. CG11883 is an uncharacterized Drosophila melanogaster UshA-like protein with two domains, an N-terminal metallophosphatase domain and a C-terminal nucleotidase domain. The N-terminal metallophosphatase domain belongs to a large superfamily of distantly related metallophosphatases (MPPs) that includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at th
Probab=96.86 E-value=0.013 Score=59.85 Aligned_cols=132 Identities=20% Similarity=0.181 Sum_probs=69.9
Q ss_pred EEecCCCCCCCCChHHHHHhhcccC--CCC-cc------c-CCCCCceEEEECCCcEE--EEEeecccCC----------
Q 007562 66 CYIIPGNHDWFDGLNTFMRFICHKS--WLG-GW------F-MPQKKSYFALQLPKGWW--VFGLDLALHC---------- 123 (598)
Q Consensus 66 ~~~~~gnhd~~~gL~aF~r~F~~~~--~l~-gw------~-~~Q~~sYfAl~Lp~~ww--LiGLDsql~g---------- 123 (598)
-++++||||+..|.+.+.+..-+-. +++ .. + ..+-.+|-.++.. |.. ++|+.+....
T Consensus 73 d~~~~GNHefd~g~~~l~~~~~~~~~~~L~aNi~~~~~~~~~~~~~~~~i~~~~-g~kIgviG~~~~~~~~~~~~~~~~~ 151 (257)
T cd07406 73 DLACFGNHEFDFGEDQLQKRLGESKFPWLSSNVFDATGGGPLPNGKESAIIERA-GVKIGLLGLVEEEWLETLTIDPEYV 151 (257)
T ss_pred cEEeecccccccCHHHHHHHHhhCCCCEEEEEEEECCCCcccCCCCCeEEEEEC-CeEEEEEEEecccccccccCCCCcc
Confidence 4678999999888887776543221 111 11 1 1123567666664 444 4666543211
Q ss_pred -CCCHHHHHHHHHHHH-hhcCCCCeEEEEecCCCccccccccCCCccchHHHHHhhhCCceeEEEcCccCCCcceeecCC
Q 007562 124 -DIDVYQFKFFAELVK-EQVGERDSVIIMTHEPNWLLDWYFNNVSGKNVKHLICDYLKGRCKLRIAGDMHHYMRHSYVPS 201 (598)
Q Consensus 124 -~id~~Q~~wf~~~l~-~~~~~~~~VIL~tHeP~w~~~~~~~~~~~~~v~~Li~~~l~~rV~L~LSGH~HhY~R~~~~~~ 201 (598)
..|. .+-+++.++ .+...-|-||+++|-+.-. ...+.+++ ..++++|+||.|.... ...
T Consensus 152 ~~~d~--~~~~~~~v~~~~~~~~D~iVvl~H~g~~~------------d~~la~~~--~~iD~IlgGH~H~~~~---~~~ 212 (257)
T cd07406 152 RYRDY--VETARELVDELREQGADLIIALTHMRLPN------------DKRLAREV--PEIDLILGGHDHEYIL---VQV 212 (257)
T ss_pred eEcCH--HHHHHHHHHHHHhCCCCEEEEEeccCchh------------hHHHHHhC--CCCceEEecccceeEe---eeE
Confidence 0122 222222221 1124458999999997421 12233333 4689999999997652 111
Q ss_pred CCCcccceEEEecCCCcccc
Q 007562 202 DGPVYVQHLLVNGCGGAFLH 221 (598)
Q Consensus 202 ~g~~~~~~lIVsGGGGAfLh 221 (598)
+ ...++-+|..|.++-
T Consensus 213 ~----~t~vv~~g~~g~~vg 228 (257)
T cd07406 213 G----GTPIVKSGSDFRTVY 228 (257)
T ss_pred C----CEEEEeCCcCcceEE
Confidence 1 234455566665653
No 37
>COG1768 Predicted phosphohydrolase [General function prediction only]
Probab=96.81 E-value=0.0094 Score=59.12 Aligned_cols=121 Identities=19% Similarity=0.270 Sum_probs=65.6
Q ss_pred cccCCCCeEEecCCCCCCCCChHHHHHhhcccCCCCcccCCCCCceEEEECCCcEEEEEe---ecccCCC--CCH-HHHH
Q 007562 58 LKQYDGPQCYIIPGNHDWFDGLNTFMRFICHKSWLGGWFMPQKKSYFALQLPKGWWVFGL---DLALHCD--IDV-YQFK 131 (598)
Q Consensus 58 ~~~~~~p~~~~~~gnhd~~~gL~aF~r~F~~~~~l~gw~~~Q~~sYfAl~Lp~~wwLiGL---Dsql~g~--id~-~Q~~ 131 (598)
+.+.+|. -+.|-||||+|-.-.+=++.-..+. .-.|+.-| +|-+ .=+.|. |+-.... .++ ..+-
T Consensus 69 i~~LPG~-K~m~rGNHDYWw~s~skl~n~lp~~-----l~~~n~~f---~l~n-~aI~G~RgW~s~~~~~e~~te~Deki 138 (230)
T COG1768 69 IGDLPGT-KYMIRGNHDYWWSSISKLNNALPPI-----LFYLNNGF---ELLN-YAIVGVRGWDSPSFDSEPLTEQDEKI 138 (230)
T ss_pred hhcCCCc-EEEEecCCccccchHHHHHhhcCch-----Hhhhccce---eEee-EEEEEeecccCCCCCcCccchhHHHH
Confidence 3345777 7889999998866333333221111 11233222 2222 223333 3322111 222 2233
Q ss_pred HHHHHH------HhhcC-CCCeEEEEecCCCccccccccCCCccchHHHHHhhhCCceeEEEcCccCCCcce
Q 007562 132 FFAELV------KEQVG-ERDSVIIMTHEPNWLLDWYFNNVSGKNVKHLICDYLKGRCKLRIAGDMHHYMRH 196 (598)
Q Consensus 132 wf~~~l------~~~~~-~~~~VIL~tHeP~w~~~~~~~~~~~~~v~~Li~~~l~~rV~L~LSGH~HhY~R~ 196 (598)
++++.- .++++ +.+.+|+|+|-|.++.+.. ...+.++++ .+||...+=||+|.-+|=
T Consensus 139 ~~RE~~RLrlsa~a~l~k~~~~fivM~HYPP~s~~~t-----~~~~sevle---e~rv~~~lyGHlHgv~~p 202 (230)
T COG1768 139 FLREIGRLRLSADAALPKGVSKFIVMTHYPPFSDDGT-----PGPFSEVLE---EGRVSKCLYGHLHGVPRP 202 (230)
T ss_pred HHHHHHHHHHHHHHhcccCcCeEEEEEecCCCCCCCC-----CcchHHHHh---hcceeeEEeeeccCCCCC
Confidence 444422 13333 5689999999999988542 223544444 489999999999986653
No 38
>PF12850 Metallophos_2: Calcineurin-like phosphoesterase superfamily domain; InterPro: IPR024654 Domains in this entry are members of the calcineurin-like phosphoesterase domain superfamily [].; PDB: 2GJU_A 1Z2W_A 1Z2X_B 3PSO_B 3PSN_B 1W24_A 2R17_B 3QFN_B 3QFO_A 3QFM_A ....
Probab=96.81 E-value=0.00051 Score=62.71 Aligned_cols=61 Identities=16% Similarity=0.211 Sum_probs=37.4
Q ss_pred CCCeEEEEecCCCccccccccCCCccchHHHHHhhhCCceeEEEcCccCCCcceeecCCCCCcccceEEEecCCCc
Q 007562 143 ERDSVIIMTHEPNWLLDWYFNNVSGKNVKHLICDYLKGRCKLRIAGDMHHYMRHSYVPSDGPVYVQHLLVNGCGGA 218 (598)
Q Consensus 143 ~~~~VIL~tHeP~w~~~~~~~~~~~~~v~~Li~~~l~~rV~L~LSGH~HhY~R~~~~~~~g~~~~~~lIVsGGGGA 218 (598)
.+..-|+++|.+.+.... ..+.+.+.+...+++++++||+|..+..... ....+..|+-+-
T Consensus 79 ~~~~~i~~~H~~~~~~~~--------~~~~~~~~~~~~~~~~~~~GH~H~~~~~~~~-------~~~~~~~Gs~~~ 139 (156)
T PF12850_consen 79 IDGFKILLSHGHPYDVQW--------DPAELREILSRENVDLVLHGHTHRPQVFKIG-------GIHVINPGSIGG 139 (156)
T ss_dssp ETTEEEEEESSTSSSSTT--------THHHHHHHHHHTTSSEEEESSSSSEEEEEET-------TEEEEEE-GSSS
T ss_pred ecCCeEEEECCCCccccc--------ChhhhhhhhcccCCCEEEcCCcccceEEEEC-------CEEEEECCcCCC
Confidence 346788889988775421 1222333444788999999999986554422 235666665443
No 39
>cd08165 MPP_MPPE1 human MPPE1 and related proteins, metallophosphatase domain. MPPE1 is a functionally uncharacterized metallophosphatase domain-containing protein. The MPPE1 gene is located on chromosome 18 and is a candidate susceptibility gene for Bipolar disorder. MPPE1 belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to
Probab=96.64 E-value=0.0021 Score=61.07 Aligned_cols=32 Identities=22% Similarity=0.409 Sum_probs=22.4
Q ss_pred EEEecCCCccccccccCCCccchHHHHHhhhCCceeEEEcCccCCCccee
Q 007562 148 IIMTHEPNWLLDWYFNNVSGKNVKHLICDYLKGRCKLRIAGDMHHYMRHS 197 (598)
Q Consensus 148 IL~tHeP~w~~~~~~~~~~~~~v~~Li~~~l~~rV~L~LSGH~HhY~R~~ 197 (598)
|++.|+|... .+. ..++++.||||+|...+..
T Consensus 107 ~~l~H~p~~~---------------~~~---~~~~~~~l~GH~H~~~~~~ 138 (156)
T cd08165 107 ILLQHFPLYR---------------LLQ---WLKPRLVLSGHTHSFCEVT 138 (156)
T ss_pred eeeeCChHHH---------------HHH---hhCCCEEEEcccCCCceeE
Confidence 8999999531 111 2356799999999866654
No 40
>cd00841 MPP_YfcE Escherichia coli YfcE and related proteins, metallophosphatase domain. YfcE is a manganase-dependent metallophosphatase, found in bacteria and archaea, that cleaves bis-p-nitrophenyl phosphate, thymidine 5'-monophosphate-p-nitrophenyl ester, and p-nitrophenyl phosphorylcholine, but is unable to hydrolyze 2',3 ' or 3',5' cyclic nucleic phosphodiesters, and various phosphomonoesters, including p-nitrophenyl phosphate. This family also includes the Bacilus subtilis YsnB and Methanococcus jannaschii MJ0936 proteins. This domain family belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid ph
Probab=96.49 E-value=0.0048 Score=57.19 Aligned_cols=42 Identities=14% Similarity=0.034 Sum_probs=25.3
Q ss_pred CeEEEEecCCCccccccccCCCccchHHHHHhhhCCceeEEEcCccCCCcc
Q 007562 145 DSVIIMTHEPNWLLDWYFNNVSGKNVKHLICDYLKGRCKLRIAGDMHHYMR 195 (598)
Q Consensus 145 ~~VIL~tHeP~w~~~~~~~~~~~~~v~~Li~~~l~~rV~L~LSGH~HhY~R 195 (598)
+..|+++|-+.+..... .+. . +.....+++++++||+|....
T Consensus 75 g~~i~v~Hg~~~~~~~~-----~~~-~---~~~~~~~~d~vi~GHtH~~~~ 116 (155)
T cd00841 75 GKRIFLTHGHLYGVKNG-----LDR-L---YLAKEGGADVVLYGHTHIPVI 116 (155)
T ss_pred CEEEEEECCcccccccc-----hhh-h---hhhhhcCCCEEEECcccCCcc
Confidence 45788888887654211 011 1 112245689999999997543
No 41
>PF09423 PhoD: PhoD-like phosphatase; InterPro: IPR018946 This entry contains a number of putative proteins as well as Alkaline phosphatase D which catalyses the reaction: A phosphate monoester + H(2)O = an alcohol + phosphate ; PDB: 2YEQ_B.
Probab=96.41 E-value=0.028 Score=61.79 Aligned_cols=93 Identities=14% Similarity=0.116 Sum_probs=47.7
Q ss_pred CCCceEEEECCCcEEEEEeecccCC---------------------CCCHHHHHHHHHHHHhhcCCCCeEEEEecCCCcc
Q 007562 99 QKKSYFALQLPKGWWVFGLDLALHC---------------------DIDVYQFKFFAELVKEQVGERDSVIIMTHEPNWL 157 (598)
Q Consensus 99 Q~~sYfAl~Lp~~wwLiGLDsql~g---------------------~id~~Q~~wf~~~l~~~~~~~~~VIL~tHeP~w~ 157 (598)
+.+.|+.++.++.--|+.||+-..- .+.++|++||++.|++ ......|+++--|.-.
T Consensus 251 ~~~~y~~~~~G~~~~~~~LD~R~~R~~~~~~~~~~~~~~~~~~~~~mLG~~Q~~wL~~~L~~--s~a~~kvi~s~v~~~~ 328 (453)
T PF09423_consen 251 QGRIYRSFRYGDLVEFFMLDTRSYRSPPPCDGPGDTCPAADDPSRTMLGEEQWDWLEDWLAS--SQATWKVIGSSVPFSP 328 (453)
T ss_dssp B----EEEEETTTEEEEE--SSSS----CCCSSEE--HHHH-TT--SS-HHHHHHHHHHHHH----SSEEEEE-SS--S-
T ss_pred CCceEEEEecCCceeEEEEechhccccccccccccccccccCCccCcCCHHHHHHHHHHHhc--CCCcEEEEEeCCceec
Confidence 4567899999987889999986321 2346999999999975 3356667776555322
Q ss_pred cccc---------ccC-CCccchH-HHHHhhhCCce--eEEEcCccCCC
Q 007562 158 LDWY---------FNN-VSGKNVK-HLICDYLKGRC--KLRIAGDMHHY 193 (598)
Q Consensus 158 ~~~~---------~~~-~~~~~v~-~Li~~~l~~rV--~L~LSGH~HhY 193 (598)
.... .+. .+....+ +|++.+...++ .++||||+|.-
T Consensus 329 ~~~~~~~~~~~~~~d~W~g~~~er~~Ll~~l~~~~~~~vV~LSGDvH~~ 377 (453)
T PF09423_consen 329 LNFPDAAEGLPFNMDSWDGYPAERQRLLDFLRESGIRNVVFLSGDVHAS 377 (453)
T ss_dssp --SS-SS-S--EETTSGGGSHHHHHHHHHHHHHTT---EEEEE-SSSSE
T ss_pred ccccccccccccCCCchhhCHHHHHHHHHHHHhhCCCCEEEEecCcchh
Confidence 2111 011 1222222 35555553444 48999999943
No 42
>cd00845 MPP_UshA_N_like Escherichia coli UshA-like family, N-terminal metallophosphatase domain. This family includes the bacterial enzyme UshA, and related enzymes including SoxB, CpdB, YhcR, and CD73. All members have a similar domain architecture which includes an N-terminal metallophosphatase domain and a C-terminal nucleotidase domain. The N-terminal metallophosphatase domain belongs to a large superfamily of distantly related metallophosphatases (MPPs) that includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The conserved domain is a double beta-sheet sandwich
Probab=96.39 E-value=0.053 Score=54.32 Aligned_cols=117 Identities=17% Similarity=0.177 Sum_probs=62.7
Q ss_pred EEecCCCCCCCCChHHHHHhhcccCC--C-Cccc-------CCCCCceEEEECCC-cEEEEEeecccCCCC---------
Q 007562 66 CYIIPGNHDWFDGLNTFMRFICHKSW--L-GGWF-------MPQKKSYFALQLPK-GWWVFGLDLALHCDI--------- 125 (598)
Q Consensus 66 ~~~~~gnhd~~~gL~aF~r~F~~~~~--l-~gw~-------~~Q~~sYfAl~Lp~-~wwLiGLDsql~g~i--------- 125 (598)
-++++||||+.-|.+.+....-.-.. + ++.. .+.-..|-.++... .--++|+.+......
T Consensus 72 d~~~~GNHe~d~g~~~l~~~~~~~~~~~l~aNv~~~~~~~~~~~~~~~~i~~~~g~kIgiiG~~~~~~~~~~~~~~~~~~ 151 (252)
T cd00845 72 DAVTIGNHEFDYGLDALAELYKDANFPVLSANLYDKDTGTGPPWAKPYKIIEVDGVKIGVIGLTTPDTPTYTPLGWIIGL 151 (252)
T ss_pred CEEeeccccccccHHHHHHHHHhCCCCEEEEeeeccCCCCCCCCcCCeEEEEECCEEEEEEEeccccceeecCCCcccCc
Confidence 45667999987787766554332221 1 1111 11223454555542 155677765432211
Q ss_pred C-HHHHHHHHHHHHhhcCCCCeEEEEecCCCccccccccCCCccchHHHHHhhhCCceeEEEcCccCCCcce
Q 007562 126 D-VYQFKFFAELVKEQVGERDSVIIMTHEPNWLLDWYFNNVSGKNVKHLICDYLKGRCKLRIAGDMHHYMRH 196 (598)
Q Consensus 126 d-~~Q~~wf~~~l~~~~~~~~~VIL~tHeP~w~~~~~~~~~~~~~v~~Li~~~l~~rV~L~LSGH~HhY~R~ 196 (598)
+ ....+-+++..++...+.+-||+++|-|.-. ..++.+++ ..++++|+||.|.....
T Consensus 152 ~~~~~~~~~~~~~~~~~~~~D~vIvl~H~g~~~------------~~~la~~~--~giDlvlggH~H~~~~~ 209 (252)
T cd00845 152 PFEDLAEAVAVAEELLAEGADVIILLSHLGLDD------------DEELAEEV--PGIDVILGGHTHHLLEE 209 (252)
T ss_pred eecCHHHHHHHHHHHHhCCCCEEEEEeccCccc------------hHHHHhcC--CCccEEEcCCcCcccCC
Confidence 0 1112223332333346679999999987432 22233332 57999999999986553
No 43
>KOG3770 consensus Acid sphingomyelinase and PHM5 phosphate metabolism protein [Lipid transport and metabolism]
Probab=96.29 E-value=0.017 Score=65.51 Aligned_cols=128 Identities=20% Similarity=0.317 Sum_probs=82.6
Q ss_pred CeEEecCCCCCCCCChHHHHHhhcccC----C-----CCcc---------cCCCCCceEEEECCCcEEEEEeecccC---
Q 007562 64 PQCYIIPGNHDWFDGLNTFMRFICHKS----W-----LGGW---------FMPQKKSYFALQLPKGWWVFGLDLALH--- 122 (598)
Q Consensus 64 p~~~~~~gnhd~~~gL~aF~r~F~~~~----~-----l~gw---------~~~Q~~sYfAl~Lp~~wwLiGLDsql~--- 122 (598)
-+|++.-||||.. ....|..-++.+. | -..| ++-+++.||+.+...|-.+|-||+.-.
T Consensus 251 vpvypalGNhe~~-P~N~F~~~~~~~~~~~~wly~~~~~~W~~wlp~e~~~t~~kga~Y~~~~~~Glr~IslNt~~c~~~ 329 (577)
T KOG3770|consen 251 VPVYPALGNHEIH-PVNLFAPGSVPKRHSQLWLYKHLAGAWSTWLPAEAKETFLKGAYYLVLVIDGLRLISLNTNYCSAP 329 (577)
T ss_pred CceeeecccCCCC-cHhhcCCCCCcchhhhhHHHHHHHhhhhccCCHHHHhhhhcCcEEEEeecCCceEEEecccccccc
Confidence 3399999999974 2233433222222 1 1222 256888999999999999999998621
Q ss_pred ------CCCC-HHHHHHHHHHHHhhcCCCCeEEEEecCCCccccccccCCCccchHH--HHHhhhCCceeEEEcCccC-C
Q 007562 123 ------CDID-VYQFKFFAELVKEQVGERDSVIIMTHEPNWLLDWYFNNVSGKNVKH--LICDYLKGRCKLRIAGDMH-H 192 (598)
Q Consensus 123 ------g~id-~~Q~~wf~~~l~~~~~~~~~VIL~tHeP~w~~~~~~~~~~~~~v~~--Li~~~l~~rV~L~LSGH~H-h 192 (598)
...| .+|++||.++++++-..+..|=+++|=|.=...... ++...+ .+.++ +.-+.-.+.||+| .
T Consensus 330 N~~L~~n~tdp~~~lqWf~~~L~~ae~~GekVhil~HIPpG~~~c~~----~ws~~f~~iv~r~-~~tI~gqf~GH~h~d 404 (577)
T KOG3770|consen 330 NFWLYANQTDPIDQLQWFVDQLQEAESAGEKVHILGHIPPGDGVCLE----GWSINFYRIVNRF-RSTIAGQFYGHTHID 404 (577)
T ss_pred ceeeeecCCCchHHhhHHHHHHHHHHhcCCEEEEEEeeCCCCcchhh----hhhHHHHHHHHHH-HHhhhhhccccCcce
Confidence 1223 378999999998778899999999999976432211 222222 12222 3446678999999 4
Q ss_pred Cccee
Q 007562 193 YMRHS 197 (598)
Q Consensus 193 Y~R~~ 197 (598)
..|..
T Consensus 405 ~f~v~ 409 (577)
T KOG3770|consen 405 EFRVF 409 (577)
T ss_pred eEEEE
Confidence 44443
No 44
>cd07403 MPP_TTHA0053 Thermus thermophilus TTHA0053 and related proteins, metallophosphatase domain. TTHA0053 is an uncharacterized Thermus thermophilus protein with a domain that belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productive metal coordination.
Probab=96.23 E-value=0.013 Score=54.02 Aligned_cols=51 Identities=20% Similarity=0.118 Sum_probs=30.0
Q ss_pred eEEEEecCCCccccccccCCCccchHHHHHhhhCCceeEEEcCccCCCccee
Q 007562 146 SVIIMTHEPNWLLDWYFNNVSGKNVKHLICDYLKGRCKLRIAGDMHHYMRHS 197 (598)
Q Consensus 146 ~VIL~tHeP~w~~~~~~~~~~~~~v~~Li~~~l~~rV~L~LSGH~HhY~R~~ 197 (598)
..|+++|+|.+-.... .+....+.+.+.+.+.+.+++++++||+|....+.
T Consensus 57 ~~Ilv~H~pp~~~~~~-~~~~~~g~~~l~~~l~~~~~~~vl~GH~H~~~~~~ 107 (129)
T cd07403 57 VDILLTHAPPAGIGDG-EDFAHRGFEAFLDFIDRFRPKLFIHGHTHLNYGYQ 107 (129)
T ss_pred cCEEEECCCCCcCcCc-ccccccCHHHHHHHHHHHCCcEEEEcCcCCCcCcc
Confidence 4589999998744321 11111223334333345679999999999544443
No 45
>TIGR01854 lipid_A_lpxH UDP-2,3-diacylglucosamine hydrolase. This model represents LpxH, UDP-2,3-diacylglucosamine hydrolase, and essential enzyme in E. coli that catalyzes the fourth step in lipid A biosynthesis. Note that Pseudomonas aeruginosa has both a member of this family that shares this function and a more distant homolog, designated LpxH2, that does not. Many species that produce lipid A lack an lpxH gene in this family; some of those species have an lpxH2 gene instead, although for which the function is unknown.
Probab=96.12 E-value=0.044 Score=54.96 Aligned_cols=19 Identities=21% Similarity=0.181 Sum_probs=15.0
Q ss_pred CCceeEEEcCccCCCccee
Q 007562 179 KGRCKLRIAGDMHHYMRHS 197 (598)
Q Consensus 179 ~~rV~L~LSGH~HhY~R~~ 197 (598)
+.+++++++||+|.-+.+.
T Consensus 183 ~~~~~~~i~GHtH~~~~~~ 201 (231)
T TIGR01854 183 RYGVDRLIHGHTHRPAIHP 201 (231)
T ss_pred HcCCCEEEECCccCcceee
Confidence 5689999999999655443
No 46
>cd07411 MPP_SoxB_N Thermus thermophilus SoxB and related proteins, N-terminal metallophosphatase domain. SoxB (sulfur oxidation protein B) is a periplasmic thiosulfohydrolase and an essential component of the sulfur oxidation pathway in archaea and bacteria. SoxB has a dinuclear manganese cluster and is thought to catalyze the release of sulfate from a protein-bound cysteine S-thiosulfonate. SoxB is expressed from the sox (sulfur oxidation) gene cluster, which encodes 15 other sox genes, and has two domains, an N-terminal metallophosphatase domain and a C-terminal 5'-nucleotidase domain. SoxB binds the SoxYZ complex and is thought to function as a sulfate-thiohydrolase. SoxB is closely related to the UshA, YchR, and CpdB proteins, all of which have the same two-domain architecture. The N-terminal metallophosphatase domain belongs to a large superfamily of distantly related metallophosphatases (MPPs) that includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzy
Probab=95.88 E-value=0.16 Score=52.07 Aligned_cols=109 Identities=15% Similarity=0.125 Sum_probs=58.1
Q ss_pred CCCCCCCCChHHHHHhhcccCC--C-C-----cccCCCCCceEEEECCCc--EEEEEeecccCCCCC----------HHH
Q 007562 70 PGNHDWFDGLNTFMRFICHKSW--L-G-----GWFMPQKKSYFALQLPKG--WWVFGLDLALHCDID----------VYQ 129 (598)
Q Consensus 70 ~gnhd~~~gL~aF~r~F~~~~~--l-~-----gw~~~Q~~sYfAl~Lp~~--wwLiGLDsql~g~id----------~~Q 129 (598)
-||||+..|.+.+.+.+-.-.. + + +...+.-.+|..++. +| -=++|+.+....... ...
T Consensus 89 ~GNHefd~g~~~l~~~~~~~~~~~l~aN~~~~~~~~~~~~~~~i~~~-~g~kVgviG~~~~~~~~~~~~~~~~~~~~~~~ 167 (264)
T cd07411 89 VGHWEFTYGPERVRELFGRLNWPFLAANVYDDEAGERVFPPYRIKEV-GGVKIGVIGQTFPYVPIANPPRFTPGLTFGIR 167 (264)
T ss_pred ecccccccCHHHHHHHHhhCCCCEEEEEEEeCCCCCcccCCEEEEEE-CCEEEEEEEeccCCcccccCcCCCCCcEECCH
Confidence 3999988788877665433221 1 0 111222335644454 34 456788654221110 122
Q ss_pred HHHHHHHHHh--hcCCCCeEEEEecCCCccccccccCCCccchHHHHHhhhCCceeEEEcCccCCC
Q 007562 130 FKFFAELVKE--QVGERDSVIIMTHEPNWLLDWYFNNVSGKNVKHLICDYLKGRCKLRIAGDMHHY 193 (598)
Q Consensus 130 ~~wf~~~l~~--~~~~~~~VIL~tHeP~w~~~~~~~~~~~~~v~~Li~~~l~~rV~L~LSGH~HhY 193 (598)
.+.+.+.+.+ +.+..+-||+++|-+.-. ..++.+++ ..++++|+||.|..
T Consensus 168 ~~~~~~~~~~~~~~~~~D~iI~l~H~g~~~------------~~~la~~~--~~iDlilgGH~H~~ 219 (264)
T cd07411 168 EEELQEVVVKLRREEGVDVVVLLSHNGLPV------------DVELAERV--PGIDVILSGHTHER 219 (264)
T ss_pred HHHHHHHHHHHHHhCCCCEEEEEecCCchh------------hHHHHhcC--CCCcEEEeCccccc
Confidence 3444444221 134568999999987321 12233332 56899999999964
No 47
>PF14582 Metallophos_3: Metallophosphoesterase, calcineurin superfamily; PDB: 1UF3_B 2YVT_A.
Probab=95.81 E-value=0.047 Score=56.05 Aligned_cols=118 Identities=19% Similarity=0.297 Sum_probs=55.3
Q ss_pred CCeEEecCCCCCCCCChHHHHHhhcccCC-CCcccCCCCCceEEEECCCcEEEEEeecccCCC--CCH-------HHHHH
Q 007562 63 GPQCYIIPGNHDWFDGLNTFMRFICHKSW-LGGWFMPQKKSYFALQLPKGWWVFGLDLALHCD--IDV-------YQFKF 132 (598)
Q Consensus 63 ~p~~~~~~gnhd~~~gL~aF~r~F~~~~~-l~gw~~~Q~~sYfAl~Lp~~wwLiGLDsql~g~--id~-------~Q~~w 132 (598)
+++++.||||||- .+.-|+|.-.+... ....+..++ |+|-.+-+ +-++|+.--+.++ ++. -..+|
T Consensus 89 ~~p~~~vPG~~Da--p~~~~lr~a~~~e~v~p~~~~vH~-sf~~~~g~--y~v~G~GGeI~~~~~~~~~~LrYP~weaey 163 (255)
T PF14582_consen 89 GVPVFVVPGNMDA--PERFFLREAYNAEIVTPHIHNVHE-SFFFWKGE--YLVAGMGGEITDDQREEEFKLRYPAWEAEY 163 (255)
T ss_dssp -SEEEEE--TTS---SHHHHHHHHHHCCCC-TTEEE-CT-CEEEETTT--EEEEEE-SEEESSS-BCSSS-EEEHHHHHH
T ss_pred CCcEEEecCCCCc--hHHHHHHHHhccceeccceeeeee-eecccCCc--EEEEecCccccCCCccccccccchHHHHHH
Confidence 3449999999994 34456665544332 233333344 33222222 6678885322111 110 11334
Q ss_pred HHHHHHhhcCCCCeEEEEecCCC-ccccccccCCCccchHHHHHhhhCCceeEEEcCccCC
Q 007562 133 FAELVKEQVGERDSVIIMTHEPN-WLLDWYFNNVSGKNVKHLICDYLKGRCKLRIAGDMHH 192 (598)
Q Consensus 133 f~~~l~~~~~~~~~VIL~tHeP~-w~~~~~~~~~~~~~v~~Li~~~l~~rV~L~LSGH~Hh 192 (598)
-.+.+.+ +. +.+.|+..|-|+ .-.+.. +.+..-+++||++ ++..++|+||+|-
T Consensus 164 ~lk~l~e-lk-~~r~IlLfhtpPd~~kg~~--h~GS~~V~dlIk~---~~P~ivl~Ghihe 217 (255)
T PF14582_consen 164 SLKFLRE-LK-DYRKILLFHTPPDLHKGLI--HVGSAAVRDLIKT---YNPDIVLCGHIHE 217 (255)
T ss_dssp HHGGGGG-CT-SSEEEEEESS-BTBCTCTB--TTSBHHHHHHHHH---H--SEEEE-SSS-
T ss_pred HHHHHHh-cc-cccEEEEEecCCccCCCcc--cccHHHHHHHHHh---cCCcEEEeccccc
Confidence 3344433 33 347888899999 222111 1223346667666 5689999999995
No 48
>cd07410 MPP_CpdB_N Escherichia coli CpdB and related proteins, N-terminal metallophosphatase domain. CpdB is a bacterial periplasmic protein with an N-terminal metallophosphatase domain and a C-terminal 3'-nucleotidase domain. This alignment model represents the N-terminal metallophosphatase domain, which has 2',3'-cyclic phosphodiesterase activity, hydrolyzing the 2',3'-cyclic phosphates of adenosine, guanosine, cytosine and uridine to yield nucleoside and phosphate. CpdB also hydrolyzes the chromogenic substrates p-nitrophenyl phosphate (PNPP), bis(PNPP) and p-nitrophenyl phosphorylcholine (NPPC). CpdB is thought to play a scavenging role during RNA hydrolysis by converting the non-transportable nucleotides produced by RNaseI to nucleosides which can easily enter a cell for use as a carbon source. This family also includes YfkN, a Bacillus subtilis nucleotide phosphoesterase with two copies of each of the metallophosphatase and 3'-nucleotidase domains. The N-terminal metallophos
Probab=95.38 E-value=0.24 Score=50.86 Aligned_cols=122 Identities=20% Similarity=0.200 Sum_probs=61.7
Q ss_pred EecCCCCCCCCChHHHHHhhcccC--CC-Cccc-----CCCCCceEEEECCCc--EEEEEeecccC------C---C---
Q 007562 67 YIIPGNHDWFDGLNTFMRFICHKS--WL-GGWF-----MPQKKSYFALQLPKG--WWVFGLDLALH------C---D--- 124 (598)
Q Consensus 67 ~~~~gnhd~~~gL~aF~r~F~~~~--~l-~gw~-----~~Q~~sYfAl~Lp~~--wwLiGLDsql~------g---~--- 124 (598)
++.+||||+.-|.+.+.+..-.-. ++ +... .+.-.+|..++...| -=++|+=+... . .
T Consensus 86 ~~~lGNHe~d~g~~~l~~~~~~~~~~~l~aNv~~~~~~~~~~~~~~i~~~~~g~kVgviG~~~~~~~~~~~~~~~~~~~~ 165 (277)
T cd07410 86 AGTLGNHEFNYGLDYLDKVIKQANFPVLSANVIDADTGEPFLKPYVILERDVGVKVGIIGLTTPQIPNWEKPNLIGGLKF 165 (277)
T ss_pred EEeecccCcccCHHHHHHHHHhCCCCEEEEEEEeCCCCCcccCCEEEEEecCCCEEEEEecCCcccccccCcccCCCcEE
Confidence 566799998768877766432211 11 1111 123356766777623 33455522110 0 1
Q ss_pred CCHH-HHHHHHHHHHhhcCCCCeEEEEecCCCccccccccCCCccc-hHHHHHhhhCCceeEEEcCccCCCc
Q 007562 125 IDVY-QFKFFAELVKEQVGERDSVIIMTHEPNWLLDWYFNNVSGKN-VKHLICDYLKGRCKLRIAGDMHHYM 194 (598)
Q Consensus 125 id~~-Q~~wf~~~l~~~~~~~~~VIL~tHeP~w~~~~~~~~~~~~~-v~~Li~~~l~~rV~L~LSGH~HhY~ 194 (598)
.|.. ..+...+.+++ ..-|-||+++|-..-.... ......+ ..++.+++ ..++++++||.|...
T Consensus 166 ~d~~~~~~~~v~~lr~--~~~D~IIvl~H~g~~~~~~--~~~~~~~~~~~la~~~--~~vD~IlgGHsH~~~ 231 (277)
T cd07410 166 TDPVETAKKYVPKLRA--EGADVVVVLAHGGFERDLE--ESLTGENAAYELAEEV--PGIDAILTGHQHRRF 231 (277)
T ss_pred cCHHHHHHHHHHHHHH--cCCCEEEEEecCCcCCCcc--cccCCccHHHHHHhcC--CCCcEEEeCCCcccc
Confidence 1221 12333333332 3457899999987554311 0011112 22343433 469999999999754
No 49
>TIGR00040 yfcE phosphoesterase, MJ0936 family. Members of this largely uncharacterized family share a motif approximating DXH(X25)GDXXD(X25)GNHD as found in several phosphoesterases, including the nucleases SbcD and Mre11, and a family of uncharacterized archaeal putative phosphoesterases described by TIGR00024. In this family, the His residue in GNHD portion of the motif is not conserved. The member MJ0936, one of two from Methanococcus jannaschii, was shown (PubMed:15128743) to act on model phosphodiesterase substrates; a divalent cation was required.
Probab=95.26 E-value=0.026 Score=52.96 Aligned_cols=15 Identities=20% Similarity=0.107 Sum_probs=12.4
Q ss_pred CCceeEEEcCccCCC
Q 007562 179 KGRCKLRIAGDMHHY 193 (598)
Q Consensus 179 ~~rV~L~LSGH~HhY 193 (598)
..+++++++||+|.-
T Consensus 104 ~~~~d~vi~GHtH~~ 118 (158)
T TIGR00040 104 ELGVDVLIFGHTHIP 118 (158)
T ss_pred ccCCCEEEECCCCCC
Confidence 467899999999953
No 50
>cd07409 MPP_CD73_N CD73 ecto-5'-nucleotidase and related proteins, N-terminal metallophosphatase domain. CD73 is a mammalian ecto-5'-nucleotidase expressed in endothelial cells and lymphocytes that catalyzes the conversion of 5'-AMP to adenosine in the final step of a pathway that generates adenosine from ATP. This pathway also includes a CD39 nucleoside triphosphate dephosphorylase that mediates the dephosphorylation of ATP to ADP and then to 5'-AMP. These enzymes all have an N-terminal metallophosphatase domain and a C-terminal 5'nucleotidase domain. The N-terminal metallophosphatase domain belongs to a large superfamily of distantly related metallophosphatases (MPPs) that includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). MPPs are functionally diverse, but all share a conserved domain with an active si
Probab=94.68 E-value=0.41 Score=49.62 Aligned_cols=114 Identities=13% Similarity=0.159 Sum_probs=59.6
Q ss_pred EecCCCCCCCCChHHHHHhhcccCC--C-Cccc--------CCCCCceEEEECCC-cEEEEEeecccCCCCCH-------
Q 007562 67 YIIPGNHDWFDGLNTFMRFICHKSW--L-GGWF--------MPQKKSYFALQLPK-GWWVFGLDLALHCDIDV------- 127 (598)
Q Consensus 67 ~~~~gnhd~~~gL~aF~r~F~~~~~--l-~gw~--------~~Q~~sYfAl~Lp~-~wwLiGLDsql~g~id~------- 127 (598)
.+.+||||+--|.+.+.+.+-+-.. + ++.. .+.-.+|-.++... .--++|+-+........
T Consensus 85 ~~~lGNHefd~G~~~l~~~~~~~~~p~l~aNv~~~~~~~~~~~~~~p~~i~~~~G~kIgviG~~~~~~~~~~~~~~~~~~ 164 (281)
T cd07409 85 AMTLGNHEFDDGVEGLAPFLNNLKFPVLSANIDTSNEPPLLDGLLKPSTILTVGGEKIGIIGYTTPDTTELSSPGGKVKF 164 (281)
T ss_pred EEEeccccccCCHHHHHHHHHhCCCCEEEEeeecCCCccccccccCCeEEEEECCEEEEEEEEecCcccccccCCCceEE
Confidence 4456999999898888765443221 1 1111 11123454444321 15577775543211110
Q ss_pred -HHHHHHHHHHHhhc-CCCCeEEEEecCCCccccccccCCCccchHHHHHhhhCCceeEEEcCccCCCc
Q 007562 128 -YQFKFFAELVKEQV-GERDSVIIMTHEPNWLLDWYFNNVSGKNVKHLICDYLKGRCKLRIAGDMHHYM 194 (598)
Q Consensus 128 -~Q~~wf~~~l~~~~-~~~~~VIL~tHeP~w~~~~~~~~~~~~~v~~Li~~~l~~rV~L~LSGH~HhY~ 194 (598)
...+-+++.+++.. ..-|-||+++|-..- ....+.+++ ..++++++||.|...
T Consensus 165 ~d~~~~~~~~v~~lr~~~~D~II~l~H~G~~------------~d~~la~~~--~giD~IiggH~H~~~ 219 (281)
T cd07409 165 LDEIEAAQKEADKLKAQGVNKIIALSHSGYE------------VDKEIARKV--PGVDVIVGGHSHTFL 219 (281)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEEeccCch------------hHHHHHHcC--CCCcEEEeCCcCccc
Confidence 11233444333211 235888999998621 122344443 469999999999653
No 51
>PHA02546 47 endonuclease subunit; Provisional
Probab=94.10 E-value=0.3 Score=52.18 Aligned_cols=13 Identities=31% Similarity=0.590 Sum_probs=11.0
Q ss_pred CeEEecCCCCCCC
Q 007562 64 PQCYIIPGNHDWF 76 (598)
Q Consensus 64 p~~~~~~gnhd~~ 76 (598)
.++++|+||||.+
T Consensus 77 i~v~~I~GNHD~~ 89 (340)
T PHA02546 77 ITLHVLVGNHDMY 89 (340)
T ss_pred CeEEEEccCCCcc
Confidence 3499999999975
No 52
>PRK05340 UDP-2,3-diacylglucosamine hydrolase; Provisional
Probab=93.52 E-value=0.87 Score=45.94 Aligned_cols=19 Identities=26% Similarity=0.195 Sum_probs=14.7
Q ss_pred hCCceeEEEcCccCCCcce
Q 007562 178 LKGRCKLRIAGDMHHYMRH 196 (598)
Q Consensus 178 l~~rV~L~LSGH~HhY~R~ 196 (598)
.++++++++.||+|.-..+
T Consensus 184 ~~~~~~~~i~GH~H~~~~~ 202 (241)
T PRK05340 184 EKHGVDTLIHGHTHRPAIH 202 (241)
T ss_pred HHhCCCEEEECcccCccee
Confidence 3568999999999965443
No 53
>cd07394 MPP_Vps29 Homo sapiens Vps29 and related proteins, metallophosphatase domain. Vps29 (vacuolar sorting protein 29), also known as vacuolar membrane protein Pep11, is a subunit of the retromer complex which is responsible for the retrieval of mannose-6-phosphate receptors (MPRs) from the endosomes for retrograde transport back to the Golgi. Vps29 has a phosphoesterase fold that acts as a protein interaction scaffold for retromer complex assembly as well as a phosphatase with specificity for the cytoplasmic tail of the MPR. The retromer includes the following 5 subunits: Vps35, Vps26, Vps29, and a dimer of the sorting nexins Vps5 (Snx1), and Vps17 (Snx2). Vps29 belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily incl
Probab=93.11 E-value=0.17 Score=49.26 Aligned_cols=15 Identities=20% Similarity=0.470 Sum_probs=12.7
Q ss_pred CCceeEEEcCccCCC
Q 007562 179 KGRCKLRIAGDMHHY 193 (598)
Q Consensus 179 ~~rV~L~LSGH~HhY 193 (598)
...++++++||+|..
T Consensus 104 ~~~~dvii~GHTH~p 118 (178)
T cd07394 104 QLDVDILISGHTHKF 118 (178)
T ss_pred hcCCCEEEECCCCcc
Confidence 467899999999964
No 54
>cd07407 MPP_YHR202W_N Saccharomyces cerevisiae YHR202W and related proteins, N-terminal metallophosphatase domain. YHR202W is an uncharacterized Saccharomyces cerevisiae UshA-like protein with two domains, an N-terminal metallophosphatase domain and a C-terminal nucleotidase domain. The N-terminal metallophosphatase domain belongs to a large superfamily of distantly related metallophosphatases (MPPs) that includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at
Probab=92.78 E-value=1.5 Score=45.91 Aligned_cols=85 Identities=16% Similarity=0.189 Sum_probs=45.6
Q ss_pred CceEEEECCCcEE--EEEeecccCC---C---CCH---HHHHHHHHHHHhhcCCCCeEEEEecCCCccccccccCCCccc
Q 007562 101 KSYFALQLPKGWW--VFGLDLALHC---D---IDV---YQFKFFAELVKEQVGERDSVIIMTHEPNWLLDWYFNNVSGKN 169 (598)
Q Consensus 101 ~sYfAl~Lp~~ww--LiGLDsql~g---~---id~---~Q~~wf~~~l~~~~~~~~~VIL~tHeP~w~~~~~~~~~~~~~ 169 (598)
.+|..++..+|.. ++|+=+.... . .|. .|.+|+.+++++ +.-+-||+++|-..-.+.. ...
T Consensus 136 ~~y~i~~~~~G~kIgiiGltt~~~~~~~~~~f~d~~~~~~~~~v~~~l~~--~~~DvIIvlsH~G~~~d~~------~~~ 207 (282)
T cd07407 136 SRYRKFTTKHGLRVLAFGFLFDFKGAANGVTVQPVADVVQEPWFQDAINN--EDVDLILVLGHMPVRDDAE------FKV 207 (282)
T ss_pred cceEEEEcCCCcEEEEEEEecccccCCCCcEEcCHHHHHHHHHHHHHHHh--cCCCEEEEEeCCCCCCCcc------HHH
Confidence 4576667654655 5677332111 1 121 334577776653 4568899999988654311 011
Q ss_pred hHHHHHhhhCCceeEEEcCccCCC
Q 007562 170 VKHLICDYLKGRCKLRIAGDMHHY 193 (598)
Q Consensus 170 v~~Li~~~l~~rV~L~LSGH~HhY 193 (598)
....+.+..+....++++||.|..
T Consensus 208 ~~~~la~~~~~id~~Ii~GHsH~~ 231 (282)
T cd07407 208 LHDAIRKIFPDTPIQFLGGHSHVR 231 (282)
T ss_pred HHHHHHHhCCCCCEEEEeCCcccc
Confidence 111222223333347999999974
No 55
>cd07389 MPP_PhoD Bacillus subtilis PhoD and related proteins, metallophosphatase domain. PhoD (also known as alkaline phosphatase D/APaseD in Bacillus subtilis) is a secreted phosphodiesterase encoded by phoD of the Pho regulon in Bacillus subtilis. PhoD homologs are found in prokaryotes, eukaryotes, and archaea. PhoD contains a twin arginine (RR) motif and is transported by the Tat (Twin-arginine translocation) translocation pathway machinery (TatAyCy). This family also includes the Fusarium oxysporum Fso1 protein. PhoD belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF
Probab=92.72 E-value=0.76 Score=45.36 Aligned_cols=25 Identities=12% Similarity=-0.057 Sum_probs=19.7
Q ss_pred CCCCceEEEECCCcEEEEEeecccC
Q 007562 98 PQKKSYFALQLPKGWWVFGLDLALH 122 (598)
Q Consensus 98 ~Q~~sYfAl~Lp~~wwLiGLDsql~ 122 (598)
.+...|+..+++..-.|+.||+...
T Consensus 144 ~~~~~y~~~~~G~~~~~~~lD~R~~ 168 (228)
T cd07389 144 GRGGIYRSFRFGDLVDLILLDTRTY 168 (228)
T ss_pred CCceEEEEEecCCcceEEEEecccc
Confidence 3567899999998668999997554
No 56
>cd07408 MPP_SA0022_N Staphylococcus aureus SA0022 and related proteins, N-terminal metallophosphatase domain. SA0022 is an uncharacterized Staphylococcus aureus UshA-like protein with two putative domains, an N-terminal metallophosphatase domain and a C-terminal nucleotidase domain. SA0022 also contains a putative C-terminal cell wall anchor domain. The N-terminal metallophosphatase domain belongs to a large superfamily of distantly related metallophosphatases (MPPs) that includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The conserved domain is a double beta-sheet
Probab=92.69 E-value=2 Score=43.85 Aligned_cols=118 Identities=20% Similarity=0.227 Sum_probs=60.8
Q ss_pred ecCCCCCCCCChHHHHHhhcccCC--C-Cccc-----CCCCCceEEEECCCcE--EEEEeecccC------CC---C---
Q 007562 68 IIPGNHDWFDGLNTFMRFICHKSW--L-GGWF-----MPQKKSYFALQLPKGW--WVFGLDLALH------CD---I--- 125 (598)
Q Consensus 68 ~~~gnhd~~~gL~aF~r~F~~~~~--l-~gw~-----~~Q~~sYfAl~Lp~~w--wLiGLDsql~------g~---i--- 125 (598)
..+||||+-.|++.+.+..-.-.. + +... .+.-.+|-.++..+|. =++|+-+... .. +
T Consensus 74 ~~~GNHefd~G~~~l~~~~~~~~~~~l~aNv~~~~~~~~~~~py~i~~~~~G~kIgviG~~~~~~~~~~~~~~~~~~~~~ 153 (257)
T cd07408 74 VTPGNHEFDYGLDRLKELSKEADFPFLSANVYDNDTGKRVFKPYKIKELGNGVKVGVIGLTTPETATKTHPKNVKDVTFE 153 (257)
T ss_pred EccccccccCCHHHHHHHHhhCCCCEEEEEEEEcCCCCcccCCEEEEEcCCCCEEEEEeecCcCcccccCccccCCcEEe
Confidence 457999998898887765432221 1 1111 1112346555665343 3566643210 11 1
Q ss_pred CH--HHHHHHHHHHHhhcCCCCeEEEEecCCCccccccccCCCccchHHHHHhhhCCceeEEEcCccCCCcc
Q 007562 126 DV--YQFKFFAELVKEQVGERDSVIIMTHEPNWLLDWYFNNVSGKNVKHLICDYLKGRCKLRIAGDMHHYMR 195 (598)
Q Consensus 126 d~--~Q~~wf~~~l~~~~~~~~~VIL~tHeP~w~~~~~~~~~~~~~v~~Li~~~l~~rV~L~LSGH~HhY~R 195 (598)
|. .-.++..+.++ ...-|-||+++|-+...... .....++.+. -..++++|+||.|....
T Consensus 154 d~~~~~~~~~v~~l~--~~~~D~iIvl~H~G~~~~~~------~~~~~~la~~--~~giDvIigGH~H~~~~ 215 (257)
T cd07408 154 DPIEEAKKVIVAALK--AKGADVIVALGHLGVDRTSS------PWTSTELAAN--VTGIDLIIDGHSHTTIE 215 (257)
T ss_pred cHHHHHHHHHHHHHH--hCCCCEEEEEeCcCcCCCCC------CccHHHHHHh--CCCceEEEeCCCccccc
Confidence 21 11222111121 24568999999988654411 1122333333 24699999999997543
No 57
>TIGR00619 sbcd exonuclease SbcD. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=91.43 E-value=0.48 Score=48.61 Aligned_cols=16 Identities=38% Similarity=0.530 Sum_probs=13.2
Q ss_pred eEEecCCCCCCCCChH
Q 007562 65 QCYIIPGNHDWFDGLN 80 (598)
Q Consensus 65 ~~~~~~gnhd~~~gL~ 80 (598)
++++|+||||....+.
T Consensus 77 ~v~~i~GNHD~~~~~~ 92 (253)
T TIGR00619 77 PIVVISGNHDSAQRLS 92 (253)
T ss_pred eEEEEccCCCChhhcc
Confidence 4999999999876554
No 58
>cd07405 MPP_UshA_N Escherichia coli UshA and related proteins, N-terminal metallophosphatase domain. UshA is a bacterial periplasmic enzyme with UDP-sugar hydrolase and dinucleoside-polyphosphate hydrolase activities associated with its N-terminal metallophosphatase domain, and 5'-nucleotidase activity associated with its C-terminal domain. UshA has been studied in Escherichia coli where it is expressed from the ushA gene as an immature precursor and proteolytically cleaved to form a mature product upon export to the periplasm. UshA hydrolyzes many different nucleotides and nucleotide derivitives and has been shown to degrade external UDP-glucose to uridine, glucose 1-phosphate and phosphate for utilization by the cell. The N-terminal metallophosphatase domain belongs to a large superfamily of distantly related metallophosphatases (MPPs) that includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs
Probab=90.40 E-value=2.9 Score=43.56 Aligned_cols=125 Identities=18% Similarity=0.159 Sum_probs=60.0
Q ss_pred EecCCCCCCCCChHHHHHhhcccCC---CCccc----CCCCCceEEEECCCcEE--EEEeecccCC---------CCC-H
Q 007562 67 YIIPGNHDWFDGLNTFMRFICHKSW---LGGWF----MPQKKSYFALQLPKGWW--VFGLDLALHC---------DID-V 127 (598)
Q Consensus 67 ~~~~gnhd~~~gL~aF~r~F~~~~~---l~gw~----~~Q~~sYfAl~Lp~~ww--LiGLDsql~g---------~id-~ 127 (598)
.+.+||||+-.|.+.+.+..-.... .++.. .+.-.+|-.++. +|.. ++|+-+.... .+. .
T Consensus 78 a~~~GNHEfD~G~~~L~~~~~~~~fp~l~aNv~~~~g~~~~~p~~i~~~-~G~kIgviG~t~~~~~~~~~~~~~~~~~f~ 156 (285)
T cd07405 78 AMAVGNHEFDNPLEVLRQQMKWANFPLLSANIYQESGERLFKPYALFDL-GGLKIAVIGLTTDDTAKIGNPAYFEGIEFR 156 (285)
T ss_pred EEeecccccccCHHHHHHHHhhCCCCEEEEEEEecCCCCccCCeEEEEE-CCEEEEEEEecccccccccCcCCcCCcEEc
Confidence 3456999998898887664322111 11111 122235544444 4555 4565322111 111 0
Q ss_pred HHHHHHHHHHHhh-cCCCCeEEEEecCCCccccccccCCCccchHHHHHhhhCCceeEEEcCccCCCc
Q 007562 128 YQFKFFAELVKEQ-VGERDSVIIMTHEPNWLLDWYFNNVSGKNVKHLICDYLKGRCKLRIAGDMHHYM 194 (598)
Q Consensus 128 ~Q~~wf~~~l~~~-~~~~~~VIL~tHeP~w~~~~~~~~~~~~~v~~Li~~~l~~rV~L~LSGH~HhY~ 194 (598)
...+=.++++++. ...-|-||+++|-.......... .......+.+++....++++++||.|...
T Consensus 157 d~~~~~~~~v~~lk~~~~D~VI~lsH~G~~~~~~~~~--~~~~~~~lA~~~~~~giD~IigGHsH~~~ 222 (285)
T cd07405 157 PPIHEAKEVVPELKQEKPDIVIAATHMGHYDNGEHGS--NAPGDVEMARALPAGGLDLIVGGHSQDPV 222 (285)
T ss_pred CHHHHHHHHHHHHHHcCCCEEEEEecccccCCccccc--cCchHHHHHHhcCCCCCCEEEeCCCCccc
Confidence 1111122222211 13568899999988653321100 00111234344434579999999999754
No 59
>COG2129 Predicted phosphoesterases, related to the Icc protein [General function prediction only]
Probab=90.18 E-value=2.5 Score=43.41 Aligned_cols=63 Identities=24% Similarity=0.334 Sum_probs=37.1
Q ss_pred HHHHHHHHHhhcCCCCeEEEEecCCCccccccc--c--CCCccchHHHHHhhhCCceeEEEcCccCCCccee
Q 007562 130 FKFFAELVKEQVGERDSVIIMTHEPNWLLDWYF--N--NVSGKNVKHLICDYLKGRCKLRIAGDMHHYMRHS 197 (598)
Q Consensus 130 ~~wf~~~l~~~~~~~~~VIL~tHeP~w~~~~~~--~--~~~~~~v~~Li~~~l~~rV~L~LSGH~HhY~R~~ 197 (598)
+..++..++....+ .+ |+.+|.|++-..... + ..+...++.+++++ ++.+.+.||+|-++-..
T Consensus 125 ~s~l~~~v~~~~~~-~~-Il~~HaPP~gt~~d~~~g~~hvGS~~vr~~ieef---qP~l~i~GHIHEs~G~d 191 (226)
T COG2129 125 YSKLKSLVKKADNP-VN-ILLTHAPPYGTLLDTPSGYVHVGSKAVRKLIEEF---QPLLGLHGHIHESRGID 191 (226)
T ss_pred HHHHHHHHhcccCc-ce-EEEecCCCCCccccCCCCccccchHHHHHHHHHh---CCceEEEeeeccccccc
Confidence 45556665532222 12 999999999652211 1 11223455666664 57999999999854443
No 60
>cd00844 MPP_Dbr1_N Dbr1 RNA lariat debranching enzyme, N-terminal metallophosphatase domain. Dbr1 is an RNA lariat debranching enzyme that hydrolyzes 2'-5' phosphodiester bonds at the branch points of excised intron lariats. This alignment model represents the N-terminal metallophosphatase domain of Dbr1. This domain belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal s
Probab=89.65 E-value=3.7 Score=42.75 Aligned_cols=50 Identities=8% Similarity=0.059 Sum_probs=29.8
Q ss_pred CCeEEEEecCCCccccccccC-----------------C-CccchHHHHHhhhCCceeEEEcCccCC-Ccce
Q 007562 144 RDSVIIMTHEPNWLLDWYFNN-----------------V-SGKNVKHLICDYLKGRCKLRIAGDMHH-YMRH 196 (598)
Q Consensus 144 ~~~VIL~tHeP~w~~~~~~~~-----------------~-~~~~v~~Li~~~l~~rV~L~LSGH~Hh-Y~R~ 196 (598)
++.=||+||+|+.--..+.+. . +...+++|++ .-+++..+|||.|. |.+.
T Consensus 164 ~~vDIlLSHdWP~gI~~~~~~~~l~~~~~~~~~~~~~~~~Gs~~~~~ll~---~lkPryhf~gH~H~~f~~~ 232 (262)
T cd00844 164 QPIDIFLSHDWPRGIYKHGDKKQLLRKKPFFRQDIESGTLGSPAAEELLK---HLKPRYWFSAHLHVKFAAL 232 (262)
T ss_pred CCCcEEEeCCCCcchhhccchHHhhhcCccchhcccccCCCCHHHHHHHH---HhCCCEEEEecCCccccee
Confidence 356799999998765332221 0 1111223322 46799999999995 5433
No 61
>KOG1432 consensus Predicted DNA repair exonuclease SIA1 [General function prediction only]
Probab=89.50 E-value=3.6 Score=44.77 Aligned_cols=68 Identities=16% Similarity=0.137 Sum_probs=41.4
Q ss_pred CCCHHHHHHHHHHHHh------hcCCCCeEEEEecCCCccccccccC--CCccc---------hHHHHHhhh-CCceeEE
Q 007562 124 DIDVYQFKFFAELVKE------QVGERDSVIIMTHEPNWLLDWYFNN--VSGKN---------VKHLICDYL-KGRCKLR 185 (598)
Q Consensus 124 ~id~~Q~~wf~~~l~~------~~~~~~~VIL~tHeP~w~~~~~~~~--~~~~~---------v~~Li~~~l-~~rV~L~ 185 (598)
.|...|.+|+++.-.+ +.+|+ +=+.+-|=|.=.....+.+ ..+-. ....++.+. +.+|+.+
T Consensus 225 wik~sq~~wl~~~~~~~~~~~~~~~P~-p~La~~HIP~~E~~~~~~~tp~~g~~~E~~~~~~~~sg~~~~L~~r~~Vk~v 303 (379)
T KOG1432|consen 225 WIKESQLEWLSDTSKEFKEPNSKYNPQ-PGLAFFHIPLPEFLELESKTPLIGVFQEGVSASKHNSGFLTTLVNRGNVKGV 303 (379)
T ss_pred chhhhhHHHHhhhhhhhhcccCccCCC-CceEEEEcccHHHhhccCCCcccceeeccccccccccHHHHHHHhccCcceE
Confidence 4567999999997632 22232 7788888886444332221 00000 112345555 7899999
Q ss_pred EcCccCC
Q 007562 186 IAGDMHH 192 (598)
Q Consensus 186 LSGH~Hh 192 (598)
++||.|.
T Consensus 304 f~GHdHv 310 (379)
T KOG1432|consen 304 FCGHDHV 310 (379)
T ss_pred Eeccccc
Confidence 9999995
No 62
>cd07382 MPP_DR1281 Deinococcus radiodurans DR1281 and related proteins, metallophosphatase domain. DR1281 is an uncharacterized Deinococcus radiodurans protein with a domain that belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productive metal coordination.
Probab=89.31 E-value=3.9 Score=42.50 Aligned_cols=116 Identities=21% Similarity=0.233 Sum_probs=57.6
Q ss_pred CCeEEecCCCCCCCCC-hHHHHHhhcccCCCCcccC-CCCCceEEEECCCcEE--EEEeecc-cCCCCCHHHHHHHHHHH
Q 007562 63 GPQCYIIPGNHDWFDG-LNTFMRFICHKSWLGGWFM-PQKKSYFALQLPKGWW--VFGLDLA-LHCDIDVYQFKFFAELV 137 (598)
Q Consensus 63 ~p~~~~~~gnhd~~~g-L~aF~r~F~~~~~l~gw~~-~Q~~sYfAl~Lp~~ww--LiGLDsq-l~g~id~~Q~~wf~~~l 137 (598)
+..+..+ |||+|=.| +..++......-..+.... ...+.|..++.+ |.. ++|+-.. ....++.+ ++-+++++
T Consensus 58 G~D~iTl-GNH~fD~gel~~~l~~~~~~l~~aN~~~~~pg~~~~i~~~~-G~kIaVigl~g~~~~~~~~~P-~~~~~~~v 134 (255)
T cd07382 58 GVDVITM-GNHTWDKKEILDFIDEEPRLLRPANYPPGTPGRGYGVVEVN-GKKIAVINLMGRVFMPPLDNP-FRAADELL 134 (255)
T ss_pred CCCEEEe-cccccCcchHHHHHhcCcCceEeeecCCCCCCCCeEEEEEC-CEEEEEEEEecccCCCcCCCH-HHHHHHHH
Confidence 3435555 99998666 2333322211111122211 123456566664 554 4454211 11123333 34455555
Q ss_pred HhhcCCCCeEEEEecCCCccccccccCCCccchHHHHHhhhCCceeEEEcCccCCC
Q 007562 138 KEQVGERDSVIIMTHEPNWLLDWYFNNVSGKNVKHLICDYLKGRCKLRIAGDMHHY 193 (598)
Q Consensus 138 ~~~~~~~~~VIL~tHeP~w~~~~~~~~~~~~~v~~Li~~~l~~rV~L~LSGH~HhY 193 (598)
++....-+-||+..|--. + +...-+-..+.++|++++.||+|.-
T Consensus 135 ~~lk~~~D~IIV~~H~g~----------t--sEk~ala~~ldg~VdvIvGtHTHv~ 178 (255)
T cd07382 135 EELKEEADIIFVDFHAEA----------T--SEKIALGWYLDGRVSAVVGTHTHVQ 178 (255)
T ss_pred HHHhcCCCEEEEEECCCC----------C--HHHHHHHHhCCCCceEEEeCCCCcc
Confidence 432234578888888731 1 1111122445788999999999963
No 63
>cd07412 MPP_YhcR_N Bacillus subtilis YhcR endonuclease and related proteins, N-terminal metallophosphatase domain. YhcR is a Bacillus subtilis sugar-nonspecific endonuclease. It cleaves endonucleolytically to yield nucleotide 3'-monophosphate products, similar to Staphylococcus aureus micrococcal nuclease. YhcR appears to be located in the cell wall, and is thought to be a substrate for a Bacillus subtilis sortase. YhcR is the major calcium-activated nuclease of B. subtilis. The N-terminal metallophosphatase domain belongs to a large superfamily of distantly related metallophosphatases (MPPs) that includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated wi
Probab=88.86 E-value=12 Score=39.13 Aligned_cols=52 Identities=13% Similarity=0.183 Sum_probs=28.8
Q ss_pred CCCeEEEEecCCCccccccccCCCc-cchHHHHHhhhCCceeEEEcCccCCCcc
Q 007562 143 ERDSVIIMTHEPNWLLDWYFNNVSG-KNVKHLICDYLKGRCKLRIAGDMHHYMR 195 (598)
Q Consensus 143 ~~~~VIL~tHeP~w~~~~~~~~~~~-~~v~~Li~~~l~~rV~L~LSGH~HhY~R 195 (598)
.-|-||+++|-..-........... ....++..+ +...++++++||.|....
T Consensus 191 ~~D~IIvL~H~G~~~~~~~~~~~~~~~~~~~l~~~-~~~~iD~IlgGHsH~~~~ 243 (288)
T cd07412 191 GVDAIVVLAHEGGSTKGGDDTCSAASGPIADIVNR-LDPDVDVVFAGHTHQAYN 243 (288)
T ss_pred CCCEEEEEeCCCCCCCCCCccccccChhHHHHHhh-cCCCCCEEEeCccCcccc
Confidence 4588999999775533221100000 012223222 135799999999997654
No 64
>PRK10966 exonuclease subunit SbcD; Provisional
Probab=88.63 E-value=0.38 Score=52.96 Aligned_cols=24 Identities=25% Similarity=0.358 Sum_probs=17.6
Q ss_pred CCCeEEecCCCCCCCCChHHHHHhh
Q 007562 62 DGPQCYIIPGNHDWFDGLNTFMRFI 86 (598)
Q Consensus 62 ~~p~~~~~~gnhd~~~gL~aF~r~F 86 (598)
..| +++|+||||.+..+......+
T Consensus 74 ~~~-v~~I~GNHD~~~~l~~~~~~l 97 (407)
T PRK10966 74 GCQ-LVVLAGNHDSVATLNESRDLL 97 (407)
T ss_pred CCc-EEEEcCCCCChhhhhhHHHHH
Confidence 345 999999999988766554443
No 65
>PRK09558 ushA bifunctional UDP-sugar hydrolase/5'-nucleotidase periplasmic precursor; Reviewed
Probab=88.38 E-value=4.8 Score=45.81 Aligned_cols=51 Identities=12% Similarity=0.122 Sum_probs=30.0
Q ss_pred CCCCeEEEEecCCCccccccccCCCccchHHHHHhhhCCceeEEEcCccCCCc
Q 007562 142 GERDSVIIMTHEPNWLLDWYFNNVSGKNVKHLICDYLKGRCKLRIAGDMHHYM 194 (598)
Q Consensus 142 ~~~~~VIL~tHeP~w~~~~~~~~~~~~~v~~Li~~~l~~rV~L~LSGH~HhY~ 194 (598)
..-+-||+++|.-....... .+ ..+....+.+++-...|+++++||.|...
T Consensus 208 ~~~D~IV~LsH~G~~~~~~~-~~-~~~~d~~la~~~~~~~IDvIlgGHsH~~~ 258 (551)
T PRK09558 208 EKPDVIIALTHMGHYDDGEH-GS-NAPGDVEMARSLPAGGLDMIVGGHSQDPV 258 (551)
T ss_pred cCCCEEEEEeccccccCCcc-CC-CCccHHHHHHhCCccCceEEEeCCCCccc
Confidence 34688999999887543211 10 00111234444333479999999999753
No 66
>COG0420 SbcD DNA repair exonuclease [DNA replication, recombination, and repair]
Probab=87.78 E-value=1.2 Score=48.17 Aligned_cols=18 Identities=11% Similarity=0.025 Sum_probs=13.7
Q ss_pred eeEEEcCccCCCcceeec
Q 007562 182 CKLRIAGDMHHYMRHSYV 199 (598)
Q Consensus 182 V~L~LSGH~HhY~R~~~~ 199 (598)
...+.-||+|..+.....
T Consensus 202 ~~YvALGHiH~~~~~~~~ 219 (390)
T COG0420 202 FDYVALGHIHKRQVIPKE 219 (390)
T ss_pred cceEEcCCcccccccCCC
Confidence 688999999976665444
No 67
>cd07381 MPP_CapA CapA and related proteins, metallophosphatase domain. CapA is one of three membrane-associated enzymes in Bacillus anthracis that is required for synthesis of gamma-polyglutamic acid (PGA), a major component of the bacterial capsule. The YwtB and PgsA proteins of Bacillus subtilis are closely related to CapA and are also included in this alignment model. CapA belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal
Probab=87.58 E-value=12 Score=37.46 Aligned_cols=131 Identities=13% Similarity=0.076 Sum_probs=66.4
Q ss_pred CCeEEecCCCCCCCCChHHHHHhhc--ccCC---CC-cccCCCCCceEEEECCCc-EEEEEeecccCCCCCH--------
Q 007562 63 GPQCYIIPGNHDWFDGLNTFMRFIC--HKSW---LG-GWFMPQKKSYFALQLPKG-WWVFGLDLALHCDIDV-------- 127 (598)
Q Consensus 63 ~p~~~~~~gnhd~~~gL~aF~r~F~--~~~~---l~-gw~~~Q~~sYfAl~Lp~~-wwLiGLDsql~g~id~-------- 127 (598)
+..+..+.+||++=-|.+++.+..- ++.. .+ +-...+...|..++.+.. .=++|+-....+....
T Consensus 77 G~d~~tlaNNH~fD~G~~gl~~t~~~l~~~~i~~~g~~~~~~~~~~~~i~~~~g~kVg~ig~t~~~~~~~~~~~~~~~~~ 156 (239)
T cd07381 77 GFDVVSLANNHTLDYGEEGLLDTLDALDEAGIAHAGAGRNLEEARRPAILEVNGIKVAFLAYTYGTNGIPLAAGARPGGV 156 (239)
T ss_pred CCCEEEcccccccccchHHHHHHHHHHHHcCCceeECCCCHHHhcCcEEEEECCEEEEEEEEECCCCCCcCcccCCcccc
Confidence 4546777779998888887776431 2221 11 111111234445555421 4456664432221110
Q ss_pred --HHHHHHHHHHHhhcCCCCeEEEEecCCCccccccccCCCccchHHHHHhhhCCceeEEEcCccCCCcceee
Q 007562 128 --YQFKFFAELVKEQVGERDSVIIMTHEPNWLLDWYFNNVSGKNVKHLICDYLKGRCKLRIAGDMHHYMRHSY 198 (598)
Q Consensus 128 --~Q~~wf~~~l~~~~~~~~~VIL~tHeP~w~~~~~~~~~~~~~v~~Li~~~l~~rV~L~LSGH~HhY~R~~~ 198 (598)
.-.+-+.+.+++.....|-||+.+|--. +. ........+++-+.+....+++++.||.|..+..+.
T Consensus 157 ~~~~~~~~~~~i~~lr~~~D~vIv~~H~G~---e~--~~~p~~~~~~la~~l~~~G~D~IiG~H~Hv~q~~E~ 224 (239)
T cd07381 157 NPLDLERIAADIAEAKKKADIVIVSLHWGV---EY--SYYPTPEQRELARALIDAGADLVIGHHPHVLQGIEI 224 (239)
T ss_pred CccCHHHHHHHHHHHhhcCCEEEEEecCcc---cC--CCCCCHHHHHHHHHHHHCCCCEEEcCCCCcCCCeEE
Confidence 0112233333322223678888888421 11 111112233454555556799999999999888875
No 68
>COG0737 UshA 5'-nucleotidase/2',3'-cyclic phosphodiesterase and related esterases [Nucleotide transport and metabolism]
Probab=85.65 E-value=12 Score=42.28 Aligned_cols=121 Identities=19% Similarity=0.141 Sum_probs=65.0
Q ss_pred EecCCCCCCCCChHHHHHhhcccCC---CCc------ccCCCCCceEEEECCCc-EEEEEeecccC---------CCCC-
Q 007562 67 YIIPGNHDWFDGLNTFMRFICHKSW---LGG------WFMPQKKSYFALQLPKG-WWVFGLDLALH---------CDID- 126 (598)
Q Consensus 67 ~~~~gnhd~~~gL~aF~r~F~~~~~---l~g------w~~~Q~~sYfAl~Lp~~-wwLiGLDsql~---------g~id- 126 (598)
.+..|||++..|++.+.++.-+-.. .+. =..+.-.+|--++.+.- -=+||+..... .++.
T Consensus 106 a~tiGNHEFd~g~~~l~~~~~~~~fp~l~aNv~~~~~~~~~~~~Py~I~~~~g~KIgiIG~~~~~~~~~~~~~~~~~~~f 185 (517)
T COG0737 106 AMTLGNHEFDYGLEALARLLDEAKFPVLSANVYDKNSTGPPFFKPYAIKEVGGVKIGIIGLTTPTIPTWEKPNAIEGVTF 185 (517)
T ss_pred EEeecccccccCHHHHHHHHhccCCceEEeeeEecCCCCccCcCCeEEEecCCeEEEEEEecCCcccccccccccCCcEE
Confidence 4567999999999888775544332 111 12334457766666542 44678764211 1111
Q ss_pred HHHHHHHHHHHHhhcCC-CCeEEEEecCCCccccccccCCCccchHHHHHhhhCCceeEEEcCccCCC
Q 007562 127 VYQFKFFAELVKEQVGE-RDSVIIMTHEPNWLLDWYFNNVSGKNVKHLICDYLKGRCKLRIAGDMHHY 193 (598)
Q Consensus 127 ~~Q~~wf~~~l~~~~~~-~~~VIL~tHeP~w~~~~~~~~~~~~~v~~Li~~~l~~rV~L~LSGH~HhY 193 (598)
....+..++.+.+-.++ -+.||+++|-+.-........... ...... ..++++++||.|++
T Consensus 186 ~d~~e~~~~~i~elk~~~vD~iI~LsH~G~~~d~~~~~~~~~--~~~~~~----~~iD~i~~GH~H~~ 247 (517)
T COG0737 186 RDPIEAAKKYIPELKGEGVDVIIALSHLGIEDDLELASEVPG--DVDVAV----PGIDLIIGGHSHTV 247 (517)
T ss_pred cCHHHHHHHHHHHHHhcCCCEEEEEeccCcCccccccccccc--cccccc----cCcceEeccCCccc
Confidence 12234444443321122 589999999987655332111000 000001 22999999999975
No 69
>cd07390 MPP_AQ1575 Aquifex aeolicus AQ1575 and related proteins, metallophosphatase domain. This family includes bacterial and archeal proteins homologous to AQ1575, an uncharacterized Aquifex aeolicus protein. AQ1575 may play an accessory role in DNA repair, based on the close proximity of its gene to Holliday junction resolvasome genes. The domain present in members of this family belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a d
Probab=84.40 E-value=0.66 Score=44.29 Aligned_cols=36 Identities=17% Similarity=0.184 Sum_probs=23.3
Q ss_pred CCCeEEEEecCCCccccccccCCCccchHHHHHhhhCCceeEEEcCccCCCcce
Q 007562 143 ERDSVIIMTHEPNWLLDWYFNNVSGKNVKHLICDYLKGRCKLRIAGDMHHYMRH 196 (598)
Q Consensus 143 ~~~~VIL~tHeP~w~~~~~~~~~~~~~v~~Li~~~l~~rV~L~LSGH~HhY~R~ 196 (598)
-+...|+++|.|.... .. ..+.+++++||+|....-
T Consensus 105 ~~~~~i~l~H~~~~~~----------~~--------~~~~d~vi~GHtH~~~~~ 140 (168)
T cd07390 105 IGGRRVYLSHYPILEW----------NG--------LDRGSWNLHGHIHSNSPD 140 (168)
T ss_pred ECCEEEEEEeCCcccC----------CC--------CCCCeEEEEeeeCCCCCC
Confidence 3567889999764321 00 245689999999965433
No 70
>PRK09419 bifunctional 2',3'-cyclic nucleotide 2'-phosphodiesterase/3'-nucleotidase precursor protein; Reviewed
Probab=84.31 E-value=6.2 Score=49.06 Aligned_cols=47 Identities=15% Similarity=0.042 Sum_probs=29.1
Q ss_pred CCCCeEEEEecCCCccccccccCCCccchHHHHHhhhCCceeEEEcCccCCCc
Q 007562 142 GERDSVIIMTHEPNWLLDWYFNNVSGKNVKHLICDYLKGRCKLRIAGDMHHYM 194 (598)
Q Consensus 142 ~~~~~VIL~tHeP~w~~~~~~~~~~~~~v~~Li~~~l~~rV~L~LSGH~HhY~ 194 (598)
..-+-||+++|...-.... .......+|.+++ ..++++|+||+|...
T Consensus 837 ~~~D~VV~LsH~G~~~d~~----~~~~~~~~lA~~v--~gIDvIigGHsH~~~ 883 (1163)
T PRK09419 837 EKVDAIIALTHLGSNQDRT----TGEITGLELAKKV--KGVDAIISAHTHTLV 883 (1163)
T ss_pred cCCCEEEEEecCCcccccc----ccccHHHHHHHhC--CCCCEEEeCCCCccc
Confidence 3468999999998653311 1111223343433 349999999999753
No 71
>cd08162 MPP_PhoA_N Synechococcus sp. strain PCC 7942 PhoA and related proteins, N-terminal metallophosphatase domain. Synechococcus sp. strain PCC 7942 PhoA is a large atypical alkaline phosphatase. It is known to be transported across the inner cytoplasmic membrane and into the periplasmic space. In vivo inactivation of the gene encoding PhoA leads to a loss of extracellular, phosphate-regulated phosphatase activity, but does not appear to affect the cells capacity for phosphate uptake. PhoA may play a role in scavenging phosphate during growth of Synechococcus sp. strain PCC 7942 in its natural environment. PhoA belongs to a domain family which includes the bacterial enzyme UshA and several other related enzymes including SoxB, CpdB, YhcR, and CD73. All members have a similar domain architecture which includes an N-terminal metallophosphatase domain and a C-terminal nucleotidase domain. The N-terminal metallophosphatase domain belongs to a large superfamily of distantly relat
Probab=84.29 E-value=13 Score=39.69 Aligned_cols=39 Identities=15% Similarity=0.250 Sum_probs=24.9
Q ss_pred CCCeEEEEecCCCccccccccCCCccchHHHHHhhhCCceeEEEcCccCCCc
Q 007562 143 ERDSVIIMTHEPNWLLDWYFNNVSGKNVKHLICDYLKGRCKLRIAGDMHHYM 194 (598)
Q Consensus 143 ~~~~VIL~tHeP~w~~~~~~~~~~~~~v~~Li~~~l~~rV~L~LSGH~HhY~ 194 (598)
.-+-||+++|--.+.. -..+.+++ ..++++|+||+|...
T Consensus 207 gvD~II~LsH~g~~~~-----------d~~lA~~v--~gIDvIigGHsH~~l 245 (313)
T cd08162 207 GINKIILLSHLQQISI-----------EQALAALL--SGVDVIIAGGSNTLL 245 (313)
T ss_pred CCCEEEEEecccccch-----------HHHHHhcC--CCCCEEEeCCCCccC
Confidence 3588999999843311 11232322 359999999999764
No 72
>TIGR00583 mre11 DNA repair protein (mre11). All proteins in this family for which functions are known are subunits of a nuclease complex made up of multiple proteins including MRE11 and RAD50 homologs. The functions of this nuclease complex include recombinational repair and non-homolgous end joining. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). The proteins in this family are distantly related to proteins in the SbcCD complex of bacteria.
Probab=83.41 E-value=4.3 Score=44.96 Aligned_cols=42 Identities=14% Similarity=0.112 Sum_probs=26.8
Q ss_pred CCeEEEEecCCCccccccccCCCccchHHHHHhhhCCceeEEEcCccCCCc
Q 007562 144 RDSVIIMTHEPNWLLDWYFNNVSGKNVKHLICDYLKGRCKLRIAGDMHHYM 194 (598)
Q Consensus 144 ~~~VIL~tHeP~w~~~~~~~~~~~~~v~~Li~~~l~~rV~L~LSGH~HhY~ 194 (598)
+..=|++.|...-.+.. + .+.-+.+++...++++.||+|..+
T Consensus 200 ~~fnIlv~Hq~~~~~~~-----~----~~ipe~llp~~fDYValGHiH~~~ 241 (405)
T TIGR00583 200 DWFNLLVLHQNHAAHTS-----T----SFLPESFIPDFFDLVIWGHEHECL 241 (405)
T ss_pred CceEEEEeCceecCCCC-----c----ccCchhhhhccCcEEEeccccccc
Confidence 45579999998632211 1 111244446679999999999754
No 73
>cd07391 MPP_PF1019 Pyrococcus furiosus PF1019 and related proteins, metallophosphatase domain. This family includes bacterial and archeal proteins homologous to PF1019, an uncharacterized Pyrococcus furiosus protein. The domain present in members of this family belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for pro
Probab=83.36 E-value=0.96 Score=43.28 Aligned_cols=13 Identities=38% Similarity=0.416 Sum_probs=10.8
Q ss_pred CeEEecCCCCCCC
Q 007562 64 PQCYIIPGNHDWF 76 (598)
Q Consensus 64 p~~~~~~gnhd~~ 76 (598)
.+++.|+||||-+
T Consensus 76 ~~v~~i~GNHD~~ 88 (172)
T cd07391 76 VDVILIRGNHDGG 88 (172)
T ss_pred CeEEEEcccCccc
Confidence 3499999999964
No 74
>COG2908 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=82.10 E-value=2.2 Score=44.10 Aligned_cols=22 Identities=18% Similarity=0.086 Sum_probs=16.4
Q ss_pred HhhhCCceeEEEcCccCCCcce
Q 007562 175 CDYLKGRCKLRIAGDMHHYMRH 196 (598)
Q Consensus 175 ~~~l~~rV~L~LSGH~HhY~R~ 196 (598)
++.-++.|+.++.||+|+-+-+
T Consensus 181 ~~~~~~~vd~vI~GH~Hr~ai~ 202 (237)
T COG2908 181 DEARRHGVDGVIHGHTHRPAIH 202 (237)
T ss_pred HHHHHcCCCEEEecCcccHhhc
Confidence 4444788999999999974333
No 75
>smart00854 PGA_cap Bacterial capsule synthesis protein PGA_cap. This protein is a putative poly-gamma-glutamate capsule biosynthesis protein found in bacteria. Poly-gamma-glutamate is a natural polymer that may be involved in virulence and may help bacteria survive in high salt concentrations. It is a surface-associated protein.
Probab=81.89 E-value=29 Score=35.06 Aligned_cols=131 Identities=8% Similarity=0.034 Sum_probs=64.7
Q ss_pred CeEEecCCCCCCCCChHHHHHhhcc--cC---CCCc-ccCCCCCceEEEECCC-cEEEEEeecccCCC------------
Q 007562 64 PQCYIIPGNHDWFDGLNTFMRFICH--KS---WLGG-WFMPQKKSYFALQLPK-GWWVFGLDLALHCD------------ 124 (598)
Q Consensus 64 p~~~~~~gnhd~~~gL~aF~r~F~~--~~---~l~g-w~~~Q~~sYfAl~Lp~-~wwLiGLDsql~g~------------ 124 (598)
..+..+.+||++=-|.+++.+..-. +. ..+. -...+...|..++.+. ..=++|+-......
T Consensus 74 ~d~~~laNNH~fD~G~~gl~~t~~~l~~a~i~~~g~~~~~~~~~~~~i~~~~g~kIg~ig~t~~~~~~~~~~~~~~g~~~ 153 (239)
T smart00854 74 FDVVSLANNHSLDYGEEGLLDTLAALDAAGIAHVGAGRNLAEARKPAIVEVKGIKIALLAYTYGTNNGWAASKDRPGVAL 153 (239)
T ss_pred CCEEEeccCcccccchHHHHHHHHHHHHCCCCEeeCCCChHHhhCcEEEEECCEEEEEEEEEcCCCCCcccCCCCCCeee
Confidence 3366666799988888877764321 11 1221 1111123454555542 14456663322110
Q ss_pred CCHHHHHHHHHHHHhhcCCCCeEEEEecCCCccccccccCCCccchHHHHHhhhCCceeEEEcCccCCCcceeec
Q 007562 125 IDVYQFKFFAELVKEQVGERDSVIIMTHEPNWLLDWYFNNVSGKNVKHLICDYLKGRCKLRIAGDMHHYMRHSYV 199 (598)
Q Consensus 125 id~~Q~~wf~~~l~~~~~~~~~VIL~tHeP~w~~~~~~~~~~~~~v~~Li~~~l~~rV~L~LSGH~HhY~R~~~~ 199 (598)
++....+=+.+.+++.....|-||+++|--.--. ..+ .+..+++.+++....++++++||.|..++.+.-
T Consensus 154 ~~~~~~~~i~~~i~~lr~~~D~vIv~~H~G~e~~----~~p-~~~~~~~A~~l~~~G~DvIiG~H~H~~~~~e~~ 223 (239)
T smart00854 154 LPDLDREKILADIARARKKADVVIVSLHWGVEYQ----YEP-TDEQRELAHALIDAGADVVIGHHPHVLQPIEIY 223 (239)
T ss_pred cCcCCHHHHHHHHHHHhccCCEEEEEecCccccC----CCC-CHHHHHHHHHHHHcCCCEEEcCCCCcCCceEEE
Confidence 1100011122222221234578888888653211 111 112344555555456999999999998887643
No 76
>TIGR01530 nadN NAD pyrophosphatase/5'-nucleotidase NadN. This model describes NadN of Haemophilus influenzae and a small number of close homologs in pathogenic, Gram-negative bacteria. NadN is a periplasmic enzyme that cleaves NAD (nicotinamide adenine dinucleotide) to NMN (nicotinamide mononucleotide) and AMP. The NMN must be converted by a 5'-nucleotidase to nicotinamide riboside for import. NadN belongs a large family of 5'-nucleotidases and has NMN 5'-nucleotidase activity for NMN, AMP, etc.
Probab=80.12 E-value=16 Score=41.77 Aligned_cols=112 Identities=17% Similarity=0.183 Sum_probs=57.0
Q ss_pred EEecCCCCCCCCChHHHHHhhcccCC--C-Cccc-------CCCCCceEEEECCC-cEEEEEeecccC-------C-CC-
Q 007562 66 CYIIPGNHDWFDGLNTFMRFICHKSW--L-GGWF-------MPQKKSYFALQLPK-GWWVFGLDLALH-------C-DI- 125 (598)
Q Consensus 66 ~~~~~gnhd~~~gL~aF~r~F~~~~~--l-~gw~-------~~Q~~sYfAl~Lp~-~wwLiGLDsql~-------g-~i- 125 (598)
=.+.+||||+-.|.+.+....-.-.. + +... ...-.+|-.++... .-=+||+.+... + .+
T Consensus 84 Da~~lGNHEFd~G~~~l~~~~~~~~fp~l~aNv~~~~~~~~~~~~~p~~i~~~~g~kIgiiGl~~~~~~~~~~~~~~~~~ 163 (550)
T TIGR01530 84 DFFTLGNHEFDAGNEGLKEFLEPLEIPVLSANVIPDAASILHGKWKPSAIFERAGEKIAIIGLDTVKKTVESSSPGKDIK 163 (550)
T ss_pred CEEEeccccccCCHHHHHHHHHhCCCCEEEEeeecCCCcccccCcCceEEEEECCeEEEEEEeecCcccccccCCCCceE
Confidence 46789999987788776654332221 1 1111 11234665555422 156788854210 0 11
Q ss_pred --CH--HHHHHHHHHHHhhcCCCCeEEEEecCCCccccccccCCCccchHHHHHhhhCCceeEEEcCccCCCc
Q 007562 126 --DV--YQFKFFAELVKEQVGERDSVIIMTHEPNWLLDWYFNNVSGKNVKHLICDYLKGRCKLRIAGDMHHYM 194 (598)
Q Consensus 126 --d~--~Q~~wf~~~l~~~~~~~~~VIL~tHeP~w~~~~~~~~~~~~~v~~Li~~~l~~rV~L~LSGH~HhY~ 194 (598)
|. .-.++.++ +++ ..-+-||+++|--.- .-..+.+++ ..++++|+||.|...
T Consensus 164 f~d~~~~~~~~v~~-Lk~--~g~D~II~lsH~g~~------------~d~~la~~~--~~iD~IigGHsH~~~ 219 (550)
T TIGR01530 164 FIDEIAAAQIAANA-LKQ--QGINKIILLSHAGFE------------KNCEIAQKI--NDIDVIVSGDSHYLL 219 (550)
T ss_pred ECCHHHHHHHHHHH-HHh--CCCCEEEEEecCCcH------------HHHHHHhcC--CCCCEEEeCCCCccc
Confidence 22 11223222 222 234889999997421 111222222 359999999999753
No 77
>cd07386 MPP_DNA_pol_II_small_archeal_C archeal DNA polymerase II, small subunit, C-terminal metallophosphatase domain. The small subunit of the archeal DNA polymerase II contains a C-terminal metallophosphatase domain. This domain is thought to be functionally active because the active site residues required for phosphoesterase activity in other members of this superfamily are intact. The archeal replicative DNA polymerases are thought to possess intrinsic phosphatase activity that hydrolyzes the pyrophosphate released during nucleotide polymerization. This domain belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiestera
Probab=76.63 E-value=1.7 Score=43.81 Aligned_cols=36 Identities=31% Similarity=0.408 Sum_probs=22.5
Q ss_pred CceeEEEcCccCCCcceeecCCCCCcccceEEEecCCCcccccccc
Q 007562 180 GRCKLRIAGDMHHYMRHSYVPSDGPVYVQHLLVNGCGGAFLHPTHV 225 (598)
Q Consensus 180 ~rV~L~LSGH~HhY~R~~~~~~~g~~~~~~lIVsGGGGAfLhpth~ 225 (598)
..++++++||.|.+...... + ..+|+ .|+|...|-.
T Consensus 190 ~~p~vii~Gh~h~~~~~~~~---~-----~~~vn--~Gsf~~~~~~ 225 (243)
T cd07386 190 EVPDILHTGHVHVYGVGVYR---G-----VLLVN--SGTWQSQTEF 225 (243)
T ss_pred CCCCEEEECCCCchHhEEEC---C-----EEEEE--CCCCcCCCCc
Confidence 46789999999976554322 2 23443 4667766654
No 78
>PRK09453 phosphodiesterase; Provisional
Probab=75.34 E-value=1.9 Score=41.45 Aligned_cols=13 Identities=15% Similarity=0.194 Sum_probs=11.1
Q ss_pred CceeEEEcCccCC
Q 007562 180 GRCKLRIAGDMHH 192 (598)
Q Consensus 180 ~rV~L~LSGH~Hh 192 (598)
.++++++.||+|.
T Consensus 117 ~~~d~vi~GHtH~ 129 (182)
T PRK09453 117 HDGDVLVYGHTHI 129 (182)
T ss_pred cCCCEEEECCCCC
Confidence 4578999999996
No 79
>PRK04036 DNA polymerase II small subunit; Validated
Probab=65.97 E-value=3.1 Score=47.16 Aligned_cols=13 Identities=46% Similarity=0.687 Sum_probs=11.1
Q ss_pred eEEecCCCCCCCC
Q 007562 65 QCYIIPGNHDWFD 77 (598)
Q Consensus 65 ~~~~~~gnhd~~~ 77 (598)
+++.||||||.+.
T Consensus 332 ~V~~ipGNHD~~~ 344 (504)
T PRK04036 332 KIIISPGNHDAVR 344 (504)
T ss_pred eEEEecCCCcchh
Confidence 4999999999754
No 80
>COG4186 Predicted phosphoesterase or phosphohydrolase [General function prediction only]
Probab=65.24 E-value=10 Score=37.46 Aligned_cols=44 Identities=25% Similarity=0.338 Sum_probs=27.5
Q ss_pred cCCCCeEEEEecCCCccccccccCCCccchHHHHHhhhCCceeEEEcCccCC
Q 007562 141 VGERDSVIIMTHEPNWLLDWYFNNVSGKNVKHLICDYLKGRCKLRIAGDMHH 192 (598)
Q Consensus 141 ~~~~~~VIL~tHeP~w~~~~~~~~~~~~~v~~Li~~~l~~rV~L~LSGH~Hh 192 (598)
+.-++.-+++.|-|.=..+- ++ -+++ ..++..++.+.+-||.|.
T Consensus 104 ie~dg~~~~LsHyP~~~~~~----~~-~~~r---~~y~~~~~~llIHGH~H~ 147 (186)
T COG4186 104 IEWDGEDVYLSHYPRPGQDH----PG-MESR---FDYLRLRVPLLIHGHLHS 147 (186)
T ss_pred eeECCeEEEEEeCCCCCCCC----cc-hhhh---HHHHhccCCeEEeccccc
Confidence 44467788888988543311 11 1121 123367999999999998
No 81
>PF09587 PGA_cap: Bacterial capsule synthesis protein PGA_cap; InterPro: IPR019079 CapA is a putative poly-gamma-glutamate capsule biosynthesis protein found in bacteria. Poly-gamma-glutamate is a natural polymer that may be involved in virulence and may help bacteria survive in high salt concentrations. It is a surface-associated protein [].
Probab=64.72 E-value=1.3e+02 Score=30.58 Aligned_cols=132 Identities=14% Similarity=0.110 Sum_probs=73.8
Q ss_pred CCeEEecCCCCCCCCChHHHHHhhc--ccC---CCC-cccCCCCCceEEEECCCc-EEEEEeecccCCC-----------
Q 007562 63 GPQCYIIPGNHDWFDGLNTFMRFIC--HKS---WLG-GWFMPQKKSYFALQLPKG-WWVFGLDLALHCD----------- 124 (598)
Q Consensus 63 ~p~~~~~~gnhd~~~gL~aF~r~F~--~~~---~l~-gw~~~Q~~sYfAl~Lp~~-wwLiGLDsql~g~----------- 124 (598)
+..++.+--||-+=-|.+++.+..- ++. ..| |....+...+..++.+.. .-++|.-....+.
T Consensus 75 G~d~vslANNH~~D~G~~gl~~Tl~~L~~~gi~~~Gag~~~~~a~~p~i~~~~g~kia~l~~t~~~~~~~~~~~~~~~~~ 154 (250)
T PF09587_consen 75 GFDVVSLANNHIFDYGEEGLLDTLEALDKAGIPYVGAGRNLEEARRPAIIEVNGVKIAFLGYTDGENGYSSANGNRPYGF 154 (250)
T ss_pred CCCEEEecCCCCccccHHHHHHHHHHHHHCCCcEeECcCChHHhcCeEEEEECCEEEEEEEEEcCCCCCccccccccccc
Confidence 4568888899966556666655322 122 122 222223333445555431 3445554332111
Q ss_pred ----------CCHHHHHHHHHHHHhhcCCCCeEEEEecCCCccccccccCCCccchHHHHHhhhCCceeEEEcCccCCCc
Q 007562 125 ----------IDVYQFKFFAELVKEQVGERDSVIIMTHEPNWLLDWYFNNVSGKNVKHLICDYLKGRCKLRIAGDMHHYM 194 (598)
Q Consensus 125 ----------id~~Q~~wf~~~l~~~~~~~~~VIL~tHeP~w~~~~~~~~~~~~~v~~Li~~~l~~rV~L~LSGH~HhY~ 194 (598)
..+++.+.+.+.+++..+..+-||++.|- .... ........+++.+.+....+++++.+|.|..|
T Consensus 155 ~~~~~~~~~~~~~~~~~~i~~~i~~~r~~~D~vIv~~Hw-G~e~----~~~p~~~q~~~a~~lidaGaDiIiG~HpHv~q 229 (250)
T PF09587_consen 155 SYRPDKAGLNPNRPGIERIKEDIREARKKADVVIVSLHW-GIEY----ENYPTPEQRELARALIDAGADIIIGHHPHVIQ 229 (250)
T ss_pred cccccccccccccchHHHHHHHHHHHhcCCCEEEEEecc-CCCC----CCCCCHHHHHHHHHHHHcCCCEEEeCCCCccc
Confidence 01233466777666545667889999886 1111 11112234456566665669999999999998
Q ss_pred ceeec
Q 007562 195 RHSYV 199 (598)
Q Consensus 195 R~~~~ 199 (598)
.++.-
T Consensus 230 ~~E~y 234 (250)
T PF09587_consen 230 PVEIY 234 (250)
T ss_pred ceEEE
Confidence 88755
No 82
>KOG3662 consensus Cell division control protein/predicted DNA repair exonuclease [Replication, recombination and repair]
Probab=62.67 E-value=12 Score=41.76 Aligned_cols=48 Identities=21% Similarity=0.162 Sum_probs=30.8
Q ss_pred eeeeceeee--cCCChhhHHhhhcchhhhhcCCCCCCCCCccccCCCCCCCCCcccccCCCCeEEecCCCCCCCCC
Q 007562 5 RFVWIHCRY--PNPSAFTYERRLFRPFEYALQPPPWYKKDHVAVNKPEVPSGVPELKQYDGPQCYIIPGNHDWFDG 78 (598)
Q Consensus 5 ~~~~gDlvY--p~~s~~~Y~~rf~~Py~~Al~~~~~~~~~~i~~~~p~~p~~~~~~~~~~~p~~~~~~gnhd~~~g 78 (598)
.|..||+.= +..+.|+|+++..| |.--++. +.+ .++..||||||..-+
T Consensus 97 vffLGDLfDeG~~~~~eEf~~~~~R-fkkIf~~------------------------k~~-~~~~~i~GNhDIGf~ 146 (410)
T KOG3662|consen 97 VFFLGDLFDEGQWAGDEEFKKRYER-FKKIFGR------------------------KGN-IKVIYIAGNHDIGFG 146 (410)
T ss_pred EEEeccccccCccCChHHHHHHHHH-HHHhhCC------------------------CCC-CeeEEeCCccccccc
Confidence 577888874 66777777666555 4432211 112 338999999997655
No 83
>TIGR01390 CycNucDiestase 2',3'-cyclic-nucleotide 2'-phosphodiesterase. 2',3'-cyclic-nucleotide 2'-phosphodiesterase is a bifunctional enzyme localized to the periplasm of Gram-negative bacteria. 2',3'-cyclic-nucleotide 2'-phosphodiesters are intermediates formed during the hydrolysis of RNA by the ribonuclease I, which is also found to the periplasm, and other enzymes of the RNAse T2 family. Bacteria are unable to transport 2',3'-cyclic-nucleotides into the cytoplasm. 2',3'-cyclic-nucleotide 2'-phosphodiesterase contains 2 active sites which catalyze the reactions that convert the 2',3'-cyclic-nucleotide into a 3'-nucleotide, which is then converted into nucleic acid and phosphate. Both final products can be transported into the cytoplasm. Thus, it has been suggested that 2',3'-cyclic-nucleotide 2'-phosphodiesterase has a 'scavenging' function. Experimental evidence indicates that 2',3'-cyclic-nucleotide 2'-phosphodiesterase enables Yersinia enterocolitica O:8 to grow on 2'3'-cAMP as a
Probab=58.74 E-value=63 Score=37.83 Aligned_cols=45 Identities=13% Similarity=0.081 Sum_probs=26.3
Q ss_pred CCeEEEEecCCCccccccccCCCccchHHHHHhhhCCceeEEEcCccCCC
Q 007562 144 RDSVIIMTHEPNWLLDWYFNNVSGKNVKHLICDYLKGRCKLRIAGDMHHY 193 (598)
Q Consensus 144 ~~~VIL~tHeP~w~~~~~~~~~~~~~v~~Li~~~l~~rV~L~LSGH~HhY 193 (598)
-+-||+++|.-.-.. .+. ....|....+.++ ..|+++++||.|..
T Consensus 196 aDvII~LsH~G~~~d-~~~--~~~en~~~~l~~v--~gID~Il~GHsH~~ 240 (626)
T TIGR01390 196 ADIIVALAHSGISAD-PYQ--PGAENSAYYLTKV--PGIDAVLFGHSHAV 240 (626)
T ss_pred CCEEEEEeccCcCCC-ccc--cccchHHHHHhcC--CCCCEEEcCCCCcc
Confidence 478888888865432 111 1122332222332 46999999999974
No 84
>TIGR00282 metallophosphoesterase, MG_246/BB_0505 family. A member of this family from Mycoplasma Pneumoniae has been crystallized and described as a novel phosphatase.
Probab=51.32 E-value=1.4e+02 Score=31.41 Aligned_cols=51 Identities=18% Similarity=0.229 Sum_probs=33.0
Q ss_pred HHHHHHHHHhhcCCCCeEEEEecCCCccccccccCCCccchHHHHHhhhCCceeEEEcCccCC
Q 007562 130 FKFFAELVKEQVGERDSVIIMTHEPNWLLDWYFNNVSGKNVKHLICDYLKGRCKLRIAGDMHH 192 (598)
Q Consensus 130 ~~wf~~~l~~~~~~~~~VIL~tHeP~w~~~~~~~~~~~~~v~~Li~~~l~~rV~L~LSGH~Hh 192 (598)
++-.++++++...+-+-||+..|.-. .+.......++..||++++.-|+|=
T Consensus 130 f~~~d~~i~~lk~~~d~IIVd~Haea------------tsEK~a~~~~ldg~vsaVvGtHtHV 180 (266)
T TIGR00282 130 FKVLKELINMLKKDCDLIFVDFHAET------------TSEKNAFGMAFDGYVTAVVGTHTHV 180 (266)
T ss_pred HHHHHHHHHhhhcCCCEEEEEeCCCC------------HHHHHHHHHHhCCCccEEEeCCCCC
Confidence 33455555432233468888888652 1233445666789999999999994
No 85
>PRK09419 bifunctional 2',3'-cyclic nucleotide 2'-phosphodiesterase/3'-nucleotidase precursor protein; Reviewed
Probab=50.64 E-value=69 Score=40.19 Aligned_cols=48 Identities=15% Similarity=0.076 Sum_probs=28.3
Q ss_pred CCCeEEEEecCCCccccccccCCCccc-hHHHHHhhhCCceeEEEcCccCCCcc
Q 007562 143 ERDSVIIMTHEPNWLLDWYFNNVSGKN-VKHLICDYLKGRCKLRIAGDMHHYMR 195 (598)
Q Consensus 143 ~~~~VIL~tHeP~w~~~~~~~~~~~~~-v~~Li~~~l~~rV~L~LSGH~HhY~R 195 (598)
.-|-||+++|-..=..... .+..+ ..+|.+++ ..++++++||.|..-+
T Consensus 234 gaDvII~l~H~G~~~~~~~---~~~en~~~~la~~~--~gID~Il~GHsH~~~~ 282 (1163)
T PRK09419 234 GADVIVALAHSGIESEYQS---SGAEDSVYDLAEKT--KGIDAIVAGHQHGLFP 282 (1163)
T ss_pred CCCEEEEEeccCcCCCCCC---CCcchHHHHHHHhC--CCCcEEEeCCCccccc
Confidence 4588999999875332110 11112 22343332 4699999999997644
No 86
>KOG4419 consensus 5' nucleotidase [Nucleotide transport and metabolism]
Probab=48.36 E-value=51 Score=38.43 Aligned_cols=126 Identities=20% Similarity=0.264 Sum_probs=68.8
Q ss_pred cccCCCCeEEecCCCCCCCCC----hHH--HHHhhcccCCCC--------cccCCCCCceEEEECCCcEEEEEeeccc--
Q 007562 58 LKQYDGPQCYIIPGNHDWFDG----LNT--FMRFICHKSWLG--------GWFMPQKKSYFALQLPKGWWVFGLDLAL-- 121 (598)
Q Consensus 58 ~~~~~~p~~~~~~gnhd~~~g----L~a--F~r~F~~~~~l~--------gw~~~Q~~sYfAl~Lp~~wwLiGLDsql-- 121 (598)
|..|+.+ .-|||+.|.+ ++- |...+-.+-... +=..+-..+|+..--+++-.+..+..-.
T Consensus 120 ~~~yD~l----~lGNHEl~~~~ve~l~~~~f~~~~k~~~la~Nv~~~~~~~~~~p~~~~~~t~~t~~~~~v~~vG~~~~~ 195 (602)
T KOG4419|consen 120 MMPYDIL----TLGNHELYQANVENLTEEYFLPAWKGPYLASNVQIFDSSNSFVPFGLEYATFLTPHGVVVLAVGFLCAS 195 (602)
T ss_pred cCccchh----hhcchhhhhhhhhccchhhhhhhhccceeecceEEecCchhhccccccceEEeccCceEEEEEEEeecc
Confidence 4344544 5799999866 221 444333322211 1224566777788788876555443211
Q ss_pred ----CCCC-----C-HHHHHHHHHHHHhhcCCCCeEEEEecCCCccccccccCCCccchHHHHHhhhCCceeE-EEcCcc
Q 007562 122 ----HCDI-----D-VYQFKFFAELVKEQVGERDSVIIMTHEPNWLLDWYFNNVSGKNVKHLICDYLKGRCKL-RIAGDM 190 (598)
Q Consensus 122 ----~g~i-----d-~~Q~~wf~~~l~~~~~~~~~VIL~tHeP~w~~~~~~~~~~~~~v~~Li~~~l~~rV~L-~LSGH~ 190 (598)
..+. + -.|.+|..+.++. .+.+-+|++.|-| +..+. ...++-.+++...+. +.+ ++.||.
T Consensus 196 f~~~~n~~~v~~veei~~~~~~~~m~~~--~~idlii~lgH~~-~~~~~-----e~~~~~~~ir~~~p~-t~IqviGGHs 266 (602)
T KOG4419|consen 196 FSGAANRTVVVPVEEITQSEWEQDMVNT--TDIDLIIALGHSP-VRDDD-----EWKSLHAEIRKVHPN-TPIQVIGGHS 266 (602)
T ss_pred ccccCCCcccccHHHHhccchHHHHhhc--cCccEEEEecccc-cccch-----hhhhHHHHHhhhCCC-CceEEECchh
Confidence 1111 1 1688999999874 5666777777766 32221 111222234444433 444 999999
Q ss_pred C--CCcce
Q 007562 191 H--HYMRH 196 (598)
Q Consensus 191 H--hY~R~ 196 (598)
| .|+++
T Consensus 267 hird~a~~ 274 (602)
T KOG4419|consen 267 HIRDFAVY 274 (602)
T ss_pred hhhhhhhc
Confidence 9 66666
No 87
>COG1311 HYS2 Archaeal DNA polymerase II, small subunit/DNA polymerase delta, subunit B [DNA replication, recombination, and repair]
Probab=48.08 E-value=9 Score=43.35 Aligned_cols=44 Identities=20% Similarity=0.398 Sum_probs=32.2
Q ss_pred eecCCChhhHHhhhcchhhhhcCCCCCCCCCccccCCCCCCCCCcccccCCCCeEEecCCCCCCC
Q 007562 12 RYPNPSAFTYERRLFRPFEYALQPPPWYKKDHVAVNKPEVPSGVPELKQYDGPQCYIIPGNHDWF 76 (598)
Q Consensus 12 vYp~~s~~~Y~~rf~~Py~~Al~~~~~~~~~~i~~~~p~~p~~~~~~~~~~~p~~~~~~gnhd~~ 76 (598)
+||.-..+-....-+++|+.+-. .+. . ..+.+.++++|||||--
T Consensus 278 iYpgq~~eL~i~di~~qy~~~A~--------~L~----~---------vp~~I~v~i~PGnhDa~ 321 (481)
T COG1311 278 IYPGQEEELVIADIYEQYEELAE--------FLD----Q---------VPEHIKVFIMPGNHDAV 321 (481)
T ss_pred cccCcccccccccchHHHHHHHH--------HHh----h---------CCCCceEEEecCCCCcc
Confidence 59999998888888889987631 111 1 13457799999999964
No 88
>PHA02239 putative protein phosphatase
Probab=47.20 E-value=13 Score=38.06 Aligned_cols=12 Identities=33% Similarity=0.410 Sum_probs=9.9
Q ss_pred CeEEecCCCCCC
Q 007562 64 PQCYIIPGNHDW 75 (598)
Q Consensus 64 p~~~~~~gnhd~ 75 (598)
+.+++|+||||-
T Consensus 61 ~~~~~l~GNHE~ 72 (235)
T PHA02239 61 DNVVTLLGNHDD 72 (235)
T ss_pred CCeEEEECCcHH
Confidence 348999999994
No 89
>PF07819 PGAP1: PGAP1-like protein; InterPro: IPR012908 The sequences found in this family are similar to PGAP1 (Q765A7 from SWISSPROT). This is an endoplasmic reticulum membrane protein with a catalytic serine-containing motif that is conserved in a number of lipases. PGAP1 functions as a GPI inositol-deacylase; this deacylation is important for the efficient transport of GPI-anchored proteins from the endoplasmic reticulum to the Golgi body [].; GO: 0016788 hydrolase activity, acting on ester bonds, 0006505 GPI anchor metabolic process, 0006886 intracellular protein transport, 0031227 intrinsic to endoplasmic reticulum membrane
Probab=46.54 E-value=68 Score=32.43 Aligned_cols=80 Identities=21% Similarity=0.287 Sum_probs=43.2
Q ss_pred CCCeEEecCCCCCCCCChHHHHHhhcccC----CCCcccCCCCCceEEEECCCcEEEEEeecccCCCCCHHHHHHHHHHH
Q 007562 62 DGPQCYIIPGNHDWFDGLNTFMRFICHKS----WLGGWFMPQKKSYFALQLPKGWWVFGLDLALHCDIDVYQFKFFAELV 137 (598)
Q Consensus 62 ~~p~~~~~~gnhd~~~gL~aF~r~F~~~~----~l~gw~~~Q~~sYfAl~Lp~~wwLiGLDsql~g~id~~Q~~wf~~~l 137 (598)
++++|+-||||.==|. +.|.+.... +... ....-+||+++.+... -+ ..|..=..|.+++.+.+
T Consensus 3 ~g~pVlFIhG~~Gs~~----q~rsl~~~~~~~~~~~~--~~~~~d~ft~df~~~~--s~----~~g~~l~~q~~~~~~~i 70 (225)
T PF07819_consen 3 SGIPVLFIHGNAGSYK----QVRSLASELQRKALLND--NSSHFDFFTVDFNEEL--SA----FHGRTLQRQAEFLAEAI 70 (225)
T ss_pred CCCEEEEECcCCCCHh----HHHHHHHHHhhhhhhcc--CccceeEEEeccCccc--cc----cccccHHHHHHHHHHHH
Confidence 5677999999853222 333332221 1111 1234556666665521 11 22333336777777765
Q ss_pred Hh-------hcCCCCeEEEEecC
Q 007562 138 KE-------QVGERDSVIIMTHE 153 (598)
Q Consensus 138 ~~-------~~~~~~~VIL~tHe 153 (598)
+. +..+.++|||+.|.
T Consensus 71 ~~i~~~~~~~~~~~~~vilVgHS 93 (225)
T PF07819_consen 71 KYILELYKSNRPPPRSVILVGHS 93 (225)
T ss_pred HHHHHhhhhccCCCCceEEEEEc
Confidence 41 23678999999995
No 90
>cd07387 MPP_PolD2_C PolD2 (DNA polymerase delta, subunit 2), C-terminal domain. PolD2 (DNA polymerase delta, subunit 2) is an auxiliary subunit of the eukaryotic DNA polymerase delta (PolD) complex thought to play a regulatory role and to serve as a scaffold for PolD assembly by interacting simultaneously with all of the other three subunits. PolD2 is catalytically inactive and lacks the active site residues required for phosphoesterase activity in other members of this superfamily. PolD2 is also involved in the recruitment of several proteins regulating DNA metabolism, including p21, PDIP1, PDIP38, PDIP46, and WRN. Human PolD consists of four subunits: p125 (PolD1), p50 (PolD2), p66(PolD3), and p12(PolD4). PolD is one of three major replicases in eukaryotes. PolD also plays an essential role in translesion DNA synthesis, homologous recombination, and DNA repair. Within the PolD complex, PolD2 tightly associates with PolD3. PolD2 belongs to the metallophosphatase (MPP) superfamily
Probab=45.57 E-value=76 Score=33.27 Aligned_cols=74 Identities=16% Similarity=0.131 Sum_probs=37.8
Q ss_pred CCCeEEecCCCCCCCCChHHH---HH-hhcccCCCCcccCCCCCceEEEECCCcEEEEEeecccCCCCCH-----HHHHH
Q 007562 62 DGPQCYIIPGNHDWFDGLNTF---MR-FICHKSWLGGWFMPQKKSYFALQLPKGWWVFGLDLALHCDIDV-----YQFKF 132 (598)
Q Consensus 62 ~~p~~~~~~gnhd~~~gL~aF---~r-~F~~~~~l~gw~~~Q~~sYfAl~Lp~~wwLiGLDsql~g~id~-----~Q~~w 132 (598)
+.-+|..+|||||--.-..-+ -+ .|-........ ..-..+| .+++. |+.++|..-|...|+-+ .-.+-
T Consensus 93 ~~i~V~imPG~~Dp~~~~lPQqplh~~lfp~s~~~~~~-~~vtNP~-~~~i~-g~~vLgtsGqni~Di~ky~~~~~~l~~ 169 (257)
T cd07387 93 SSVPVDLMPGEFDPANHSLPQQPLHRCLFPKSSNYSTL-NLVTNPY-EFSID-GVRVLGTSGQNVDDILKYSSLESRLDI 169 (257)
T ss_pred cCCeEEECCCCCCcccccCCCCCCCHHHhhcccccCCc-EEeCCCe-EEEEC-CEEEEEECCCCHHHHHHhCCCCCHHHH
Confidence 344599999999954332111 11 11111111112 2233444 46665 59999997765444422 22556
Q ss_pred HHHHHH
Q 007562 133 FAELVK 138 (598)
Q Consensus 133 f~~~l~ 138 (598)
++..++
T Consensus 170 me~~L~ 175 (257)
T cd07387 170 LERTLK 175 (257)
T ss_pred HHHHHH
Confidence 666665
No 91
>TIGR00024 SbcD_rel_arch putative phosphoesterase, SbcD/Mre11-related. Members of this uncharacterized family share a motif approximating DXH(X25)GDXXD(X25)GNHD as found in several phosphoesterases, including the nucleases SbcD and Mre11. SbcD is a subunit of the SbcCD nuclease of E. coli that can cleave DNA hairpins to unblock stalled DNA replication. All members of this family are archaeal.
Probab=43.85 E-value=21 Score=36.39 Aligned_cols=17 Identities=24% Similarity=0.288 Sum_probs=12.2
Q ss_pred ceeEEEcCccCCCccee
Q 007562 181 RCKLRIAGDMHHYMRHS 197 (598)
Q Consensus 181 rV~L~LSGH~HhY~R~~ 197 (598)
.++..++||+|---+..
T Consensus 134 ~~d~~I~GH~HP~i~l~ 150 (225)
T TIGR00024 134 DAKVLIFGHEHPAVKLR 150 (225)
T ss_pred cCCEEEECCCCceEEEE
Confidence 35689999999654443
No 92
>PRK11907 bifunctional 2',3'-cyclic nucleotide 2'-phosphodiesterase/3'-nucleotidase precursor protein; Reviewed
Probab=42.82 E-value=1.6e+02 Score=35.97 Aligned_cols=22 Identities=27% Similarity=0.382 Sum_probs=16.8
Q ss_pred EecCCCCCCCCChHHHHHhhcc
Q 007562 67 YIIPGNHDWFDGLNTFMRFICH 88 (598)
Q Consensus 67 ~~~~gnhd~~~gL~aF~r~F~~ 88 (598)
.+.+||||+-.|++.+.+..-+
T Consensus 204 A~tLGNHEFDyG~d~L~~~l~~ 225 (814)
T PRK11907 204 AGTLGNHEFNYGLDYLEKVIAT 225 (814)
T ss_pred EEEechhhcccCHHHHHHHHHh
Confidence 4678999998898877665443
No 93
>PF10230 DUF2305: Uncharacterised conserved protein (DUF2305); InterPro: IPR019363 This entry contains proteins that have no known function.
Probab=42.81 E-value=45 Score=34.54 Aligned_cols=21 Identities=38% Similarity=0.588 Sum_probs=17.7
Q ss_pred CeEEecCCCCCCCCChHHHHHhhcc
Q 007562 64 PQCYIIPGNHDWFDGLNTFMRFICH 88 (598)
Q Consensus 64 p~~~~~~gnhd~~~gL~aF~r~F~~ 88 (598)
+.++.|||| .|+..|...|..
T Consensus 3 ~li~~IPGN----PGlv~fY~~Fl~ 23 (266)
T PF10230_consen 3 PLIVFIPGN----PGLVEFYEEFLS 23 (266)
T ss_pred EEEEEECCC----CChHHHHHHHHH
Confidence 458999999 899999888864
No 94
>PRK09420 cpdB bifunctional 2',3'-cyclic nucleotide 2'-phosphodiesterase/3'-nucleotidase periplasmic precursor protein; Reviewed
Probab=42.28 E-value=1.8e+02 Score=34.33 Aligned_cols=45 Identities=18% Similarity=0.143 Sum_probs=25.5
Q ss_pred CCeEEEEecCCCccccccccCCCccchHHHHHhhhCCceeEEEcCccCCC
Q 007562 144 RDSVIIMTHEPNWLLDWYFNNVSGKNVKHLICDYLKGRCKLRIAGDMHHY 193 (598)
Q Consensus 144 ~~~VIL~tHeP~w~~~~~~~~~~~~~v~~Li~~~l~~rV~L~LSGH~HhY 193 (598)
-|-||+++|--.- .+.+. ....|....+.++ ..+++++.||.|..
T Consensus 219 aDvII~LsH~G~~-~d~~~--~~aen~~~~l~~v--~gID~Il~GHsH~~ 263 (649)
T PRK09420 219 ADIVVAIPHSGIS-ADPYK--AMAENSVYYLSEV--PGIDAIMFGHSHAV 263 (649)
T ss_pred CCEEEEEecCCcC-CCCcc--ccccchhHHHhcC--CCCCEEEeCCCCcc
Confidence 4788888887643 22211 1122322222321 45999999999964
No 95
>cd07424 MPP_PrpA_PrpB PrpA and PrpB, metallophosphatase domain. PrpA and PrpB are bacterial type I serine/threonine and tyrosine phosphatases thought to modulate the expression of proteins that protect the cell upon accumulation of misfolded proteins in the periplasm. The PPP (phosphoprotein phosphatase) family, to which PrpA and PrpB belong, is one of two known protein phosphatase families specific for serine and threonine. This family also includes: PP1, PP2A, PP2B (calcineurin), PP4, PP5, PP6, PP7, Bsu1, RdgC, PrpE, and ApA4 hydrolase. The PPP catalytic domain is defined by three conserved motifs (-GDXHG-, -GDXVDRG- and -GNHE-). The PPP enzyme family is ancient with members found in all eukaryotes, and in most bacterial and archeal genomes. Dephosphorylation of phosphoserines and phosphothreonines on target proteins plays a central role in the regulation of many cellular processes. PPPs belong to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all
Probab=40.22 E-value=23 Score=34.85 Aligned_cols=12 Identities=8% Similarity=0.025 Sum_probs=10.1
Q ss_pred eeEEEcCccCCC
Q 007562 182 CKLRIAGDMHHY 193 (598)
Q Consensus 182 V~L~LSGH~HhY 193 (598)
.++++.||+|--
T Consensus 169 ~~~iV~GHTh~~ 180 (207)
T cd07424 169 VDAVVHGHTPVK 180 (207)
T ss_pred CCEEEECCCCCC
Confidence 578999999964
No 96
>PRK09418 bifunctional 2',3'-cyclic nucleotide 2'-phosphodiesterase/3'-nucleotidase precursor protein; Reviewed
Probab=39.21 E-value=1.4e+02 Score=36.13 Aligned_cols=46 Identities=15% Similarity=0.146 Sum_probs=26.4
Q ss_pred CCeEEEEecCCCccccccccCCCccchHHHHHhhhCCceeEEEcCccCCCc
Q 007562 144 RDSVIIMTHEPNWLLDWYFNNVSGKNVKHLICDYLKGRCKLRIAGDMHHYM 194 (598)
Q Consensus 144 ~~~VIL~tHeP~w~~~~~~~~~~~~~v~~Li~~~l~~rV~L~LSGH~HhY~ 194 (598)
-|-||+++|--.-.. ... ....+....++++ ..|+++|+||+|..-
T Consensus 245 aDvIIaLsH~G~~~d-~~~--~~~ena~~~l~~v--~gID~IlgGHsH~~~ 290 (780)
T PRK09418 245 ADVIVALAHSGVDKS-GYN--VGMENASYYLTEV--PGVDAVLMGHSHTEV 290 (780)
T ss_pred CCEEEEEeccCcccc-ccc--ccchhhhHHHhcC--CCCCEEEECCCCCcc
Confidence 477888888865432 111 1122222222321 469999999999754
No 97
>COG2843 PgsA Putative enzyme of poly-gamma-glutamate biosynthesis (capsule formation) [Cell envelope biogenesis, outer membrane]
Probab=38.50 E-value=89 Score=34.65 Aligned_cols=70 Identities=14% Similarity=0.106 Sum_probs=49.9
Q ss_pred hhcCCCCeEEEEecC-CCccccccccCCCccchHHHHHhhhCCceeEEEcCccCCCcceeecCCCCCcccceEEEecCCC
Q 007562 139 EQVGERDSVIIMTHE-PNWLLDWYFNNVSGKNVKHLICDYLKGRCKLRIAGDMHHYMRHSYVPSDGPVYVQHLLVNGCGG 217 (598)
Q Consensus 139 ~~~~~~~~VIL~tHe-P~w~~~~~~~~~~~~~v~~Li~~~l~~rV~L~LSGH~HhY~R~~~~~~~g~~~~~~lIVsGGGG 217 (598)
++.+.++.||+..|+ =.|-.++. +..+++-+++....++++..+|-|+-++.+.-. +++ .|..+.|
T Consensus 219 ~a~k~adlviv~~HwG~ey~~~p~------~~q~~~a~~lidAGa~iIvGhhpHvlqpiE~~~-~~~------~I~YsLG 285 (372)
T COG2843 219 AAKKGADLVIVQPHWGVEYAYEPA------AGQRALARRLIDAGADIIVGHHPHVLQPIEIYI-QGK------PILYSLG 285 (372)
T ss_pred hhhccCCEEEEeccccccccCCCc------HHHHHHHHHHHhcCcCeEecCCCCcCcceEEec-CCc------EEEEecc
Confidence 446788999999998 66655442 225556666666789999999999998887441 232 5668888
Q ss_pred cccc
Q 007562 218 AFLH 221 (598)
Q Consensus 218 AfLh 221 (598)
.|+-
T Consensus 286 nf~f 289 (372)
T COG2843 286 NFLF 289 (372)
T ss_pred ceec
Confidence 8874
No 98
>cd07425 MPP_Shelphs Shewanella-like phosphatases, metallophosphatase domain. This family includes bacterial, eukaryotic, and archeal proteins orthologous to the Shewanella cold-active protein-tyrosine phosphatase, CAPTPase. CAPTPase is an uncharacterized protein that belongs to the Shelph (Shewanella-like phosphatase) family of PPP (phosphoprotein phosphatases). The PPP family is one of two known protein phosphatase families specific for serine and threonine. In addition to Shelps, the PPP family also includes: PP1, PP2A, PP2B (calcineurin), PP4, PP5, PP6, PP7, Bsu1, RdgC, PrpE, PrpA/PrpB, and ApA4 hydrolase. The PPP catalytic domain is defined by three conserved motifs (-GDXHG-, -GDXVDRG- and -GNHE-). The PPP enzyme family is ancient with members found in all eukaryotes, and in most bacterial and archeal genomes. Dephosphorylation of phosphoserines and phosphothreonines on target proteins plays a central role in the regulation of many cellular processes. PPPs belong to the metal
Probab=38.31 E-value=28 Score=34.76 Aligned_cols=16 Identities=13% Similarity=0.015 Sum_probs=12.5
Q ss_pred CCceeEEEcCccCCCc
Q 007562 179 KGRCKLRIAGDMHHYM 194 (598)
Q Consensus 179 ~~rV~L~LSGH~HhY~ 194 (598)
....++.+.||||--.
T Consensus 165 ~~~~~~iv~GHTh~~~ 180 (208)
T cd07425 165 RLGAKRMVVGHTPQEG 180 (208)
T ss_pred HcCCCeEEEcCeeeec
Confidence 4567899999999543
No 99
>cd07380 MPP_CWF19_N Schizosaccharomyces pombe CWF19 and related proteins, N-terminal metallophosphatase domain. CWF19 cell cycle control protein (also known as CWF19-like 1 (CWF19L1) in Homo sapiens), N-terminal metallophosphatase domain. CWF19 contains C-terminal domains similar to that found in the CwfJ cell cycle control protein. The metallophosphatase domain belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site
Probab=37.67 E-value=29 Score=33.38 Aligned_cols=48 Identities=19% Similarity=0.068 Sum_probs=28.9
Q ss_pred CeEEEEecCCCcccccccc--------CCCccchHHHHHhhhCCceeEEEcCccC-CCcc
Q 007562 145 DSVIIMTHEPNWLLDWYFN--------NVSGKNVKHLICDYLKGRCKLRIAGDMH-HYMR 195 (598)
Q Consensus 145 ~~VIL~tHeP~w~~~~~~~--------~~~~~~v~~Li~~~l~~rV~L~LSGH~H-hY~R 195 (598)
..-||+||+|+.--....+ ..+...++++++ .-+++..+|||.| .|+|
T Consensus 69 ~~DILlTh~wP~gi~~~~~~~~~~~~~~~GS~~i~~l~~---~lkPrYhf~gh~~~fyer 125 (150)
T cd07380 69 GVDILLTSEWPKGISKLSKVPFEETLLICGSDLIAELAK---KLKPRYHFAGLEGVFYER 125 (150)
T ss_pred CCCEEECCCCchhhhhhCCCcccccccCCCCHHHHHHHH---HcCCCeEeecCCCceEee
Confidence 5679999999865421111 011222334433 3578999999999 5555
No 100
>cd07398 MPP_YbbF-LpxH Escherichia coli YbbF/LpxH and related proteins, metallophosphatase domain. YbbF/LpxH is an Escherichia coli UDP-2,3-diacylglucosamine hydrolase thought to catalyze the fourth step of lipid A biosynthesis, in which a precursor UDP-2,3-diacylglucosamine is hydrolyzed to yield 2,3-diacylglucosamine 1-phosphate and UMP. YbbF belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues l
Probab=32.22 E-value=25 Score=34.09 Aligned_cols=19 Identities=21% Similarity=0.219 Sum_probs=15.4
Q ss_pred CCceeEEEcCccCCCccee
Q 007562 179 KGRCKLRIAGDMHHYMRHS 197 (598)
Q Consensus 179 ~~rV~L~LSGH~HhY~R~~ 197 (598)
..+++++++||+|.-....
T Consensus 187 ~~~~~~~i~GH~H~~~~~~ 205 (217)
T cd07398 187 RKGVDGVICGHTHRPALHE 205 (217)
T ss_pred hcCCCEEEECCCCCCCeEE
Confidence 6789999999999765544
No 101
>PF00954 S_locus_glycop: S-locus glycoprotein family; InterPro: IPR000858 In Brassicaceae, self-incompatible plants have a self/non-self recognition system, which involves the inability of flowering plants to achieve self-fertilisation. This is sporophytically controlled by multiple alleles at a single locus (S). There are a total of 50 different S alleles in Brassica oleracea. S-locus glycoproteins, as well as S-receptor kinases, are in linkage with the S-alleles []. Most of the proteins within this family contain apple-like domain (IPR003609 from INTERPRO), which is predicted to possess protein- and/or carbohydrate-binding functions.; GO: 0048544 recognition of pollen
Probab=27.84 E-value=65 Score=28.68 Aligned_cols=45 Identities=18% Similarity=0.491 Sum_probs=36.1
Q ss_pred hcccccccccccccccCCCeeEEEEccCCCeEEEEeecccCCccccc
Q 007562 490 LHLHFDEAFSSLRIANYKAFTRFHINHDGDLEVYTLAVDKVPKEWEL 536 (598)
Q Consensus 490 f~~h~neaFSslrI~dyK~FlR~~I~~dG~L~iy~igvdkVpr~W~~ 536 (598)
|-.+.+|.+-++.+.+-..+.||.+|.||.|+.|..- ..-+.|..
T Consensus 27 fv~~~~e~~~t~~~~~~s~~~r~~ld~~G~l~~~~w~--~~~~~W~~ 71 (110)
T PF00954_consen 27 FVSNNEEVYYTYSLSNSSVLSRLVLDSDGQLQRYIWN--ESTQSWSV 71 (110)
T ss_pred EEECCCeEEEEEecCCCceEEEEEEeeeeEEEEEEEe--cCCCcEEE
Confidence 4467899999999998888999999999999999862 23345543
No 102
>KOG3724 consensus Negative regulator of COPII vesicle formation [Intracellular trafficking, secretion, and vesicular transport]
Probab=26.90 E-value=1.5e+02 Score=36.28 Aligned_cols=85 Identities=21% Similarity=0.337 Sum_probs=50.3
Q ss_pred ccCCCCeEEecCCCCCCCCChHHHHHhhcccC---C-------CCcccCCCCCceEEEECCCcEEEEEeecccCCCCCHH
Q 007562 59 KQYDGPQCYIIPGNHDWFDGLNTFMRFICHKS---W-------LGGWFMPQKKSYFALQLPKGWWVFGLDLALHCDIDVY 128 (598)
Q Consensus 59 ~~~~~p~~~~~~gnhd~~~gL~aF~r~F~~~~---~-------l~gw~~~Q~~sYfAl~Lp~~wwLiGLDsql~g~id~~ 128 (598)
...+|.||+-||||=-=| -+.|-+.... . ..+...+-+-++||++++... +..+|.+-..
T Consensus 85 lelsGIPVLFIPGNAGSy----KQvRSiAS~a~n~y~~~~~e~t~~~d~~~~~DFFaVDFnEe~------tAm~G~~l~d 154 (973)
T KOG3724|consen 85 LELSGIPVLFIPGNAGSY----KQVRSIASVAQNAYQGGPFEKTEDRDNPFSFDFFAVDFNEEF------TAMHGHILLD 154 (973)
T ss_pred ccCCCceEEEecCCCCch----HHHHHHHHHHhhhhcCCchhhhhcccCccccceEEEcccchh------hhhccHhHHH
Confidence 356788899999996433 2333222211 1 112223445567777776643 2345777789
Q ss_pred HHHHHHHHHH---hhc--CCCCe------EEEEecC
Q 007562 129 QFKFFAELVK---EQV--GERDS------VIIMTHE 153 (598)
Q Consensus 129 Q~~wf~~~l~---~~~--~~~~~------VIL~tHe 153 (598)
|-+|.-+..+ ..+ +++.+ |||+-|.
T Consensus 155 QtEYV~dAIk~ILslYr~~~e~~~p~P~sVILVGHS 190 (973)
T KOG3724|consen 155 QTEYVNDAIKYILSLYRGEREYASPLPHSVILVGHS 190 (973)
T ss_pred HHHHHHHHHHHHHHHhhcccccCCCCCceEEEEecc
Confidence 9999998775 111 23444 8888884
No 103
>PF10755 DUF2585: Protein of unknown function (DUF2585); InterPro: IPR019691 This family is conserved in Proteobacteria. The function is not known, but it is thought to be a transmembrane protein. ; GO: 0005886 plasma membrane
Probab=26.60 E-value=2.7e+02 Score=27.59 Aligned_cols=18 Identities=22% Similarity=0.805 Sum_probs=14.0
Q ss_pred hHHHHHHHHHhhhccccc
Q 007562 269 FIGGIVYFVLVFSMFPQC 286 (598)
Q Consensus 269 ~i~G~~yfll~~s~~p~~ 286 (598)
+|=|++++.+.+.++|+-
T Consensus 41 iIHGflFy~l~~l~~~r~ 58 (165)
T PF10755_consen 41 IIHGFLFYALLWLLLPRW 58 (165)
T ss_pred HHHHHHHHHHHHHHhccC
Confidence 677888888888888764
No 104
>cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.
Probab=26.51 E-value=1.3e+02 Score=29.31 Aligned_cols=41 Identities=22% Similarity=0.256 Sum_probs=19.8
Q ss_pred EEEeecccCCCCCHHHHHHHHHHHHhhcCCCCeEEEEecCCC
Q 007562 114 VFGLDLALHCDIDVYQFKFFAELVKEQVGERDSVIIMTHEPN 155 (598)
Q Consensus 114 LiGLDsql~g~id~~Q~~wf~~~l~~~~~~~~~VIL~tHeP~ 155 (598)
++-||.-+ ..+|...++.+.+++.+...++..+|+++|++.
T Consensus 146 llllDEPt-~~LD~~~~~~l~~~l~~~~~~g~tiii~sH~~~ 186 (201)
T cd03231 146 LWILDEPT-TALDKAGVARFAEAMAGHCARGGMVVLTTHQDL 186 (201)
T ss_pred EEEEeCCC-CCCCHHHHHHHHHHHHHHHhCCCEEEEEecCch
Confidence 34444322 334555555555555432233455666666554
No 105
>cd07390 MPP_AQ1575 Aquifex aeolicus AQ1575 and related proteins, metallophosphatase domain. This family includes bacterial and archeal proteins homologous to AQ1575, an uncharacterized Aquifex aeolicus protein. AQ1575 may play an accessory role in DNA repair, based on the close proximity of its gene to Holliday junction resolvasome genes. The domain present in members of this family belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a d
Probab=26.40 E-value=65 Score=30.67 Aligned_cols=16 Identities=38% Similarity=0.420 Sum_probs=12.3
Q ss_pred CCCCeEEecCCCCCCCC
Q 007562 61 YDGPQCYIIPGNHDWFD 77 (598)
Q Consensus 61 ~~~p~~~~~~gnhd~~~ 77 (598)
.+.| +++|+||||-..
T Consensus 68 ~~~~-~~~v~GNHD~~~ 83 (168)
T cd07390 68 LNGR-KHLIKGNHDSSL 83 (168)
T ss_pred CCCC-eEEEeCCCCchh
Confidence 3455 999999999643
No 106
>COG4133 CcmA ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones]
Probab=23.39 E-value=1.4e+02 Score=30.67 Aligned_cols=43 Identities=19% Similarity=0.265 Sum_probs=36.1
Q ss_pred EEeecccCCCCCHHHHHHHHHHHHhhcCCCCeEEEEecCCCccc
Q 007562 115 FGLDLALHCDIDVYQFKFFAELVKEQVGERDSVIIMTHEPNWLL 158 (598)
Q Consensus 115 iGLDsql~g~id~~Q~~wf~~~l~~~~~~~~~VIL~tHeP~w~~ 158 (598)
|-||- -...+|+.+.+=|.++++++...+.=||+-||.|.=..
T Consensus 152 WiLDE-P~taLDk~g~a~l~~l~~~H~~~GGiVllttHq~l~~~ 194 (209)
T COG4133 152 WILDE-PFTALDKEGVALLTALMAAHAAQGGIVLLTTHQPLPIA 194 (209)
T ss_pred eeecC-cccccCHHHHHHHHHHHHHHhcCCCEEEEecCCccCCC
Confidence 34564 34667999999999999988999999999999998765
No 107
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=23.01 E-value=1.7e+02 Score=28.35 Aligned_cols=40 Identities=15% Similarity=0.256 Sum_probs=20.5
Q ss_pred EEEeecccCCCCCHHHHHHHHHHHHhhcCCCCeEEEEecCC
Q 007562 114 VFGLDLALHCDIDVYQFKFFAELVKEQVGERDSVIIMTHEP 154 (598)
Q Consensus 114 LiGLDsql~g~id~~Q~~wf~~~l~~~~~~~~~VIL~tHeP 154 (598)
++-+|--. ..+|...++.+.+.+++....+..+|+++|++
T Consensus 129 vlllDEP~-~~LD~~~~~~l~~~l~~~~~~~~tiiivtH~~ 168 (192)
T cd03232 129 ILFLDEPT-SGLDSQAAYNIVRFLKKLADSGQAILCTIHQP 168 (192)
T ss_pred EEEEeCCC-cCCCHHHHHHHHHHHHHHHHcCCEEEEEEcCC
Confidence 44455422 33455555566655543223355666666665
No 108
>PRK13540 cytochrome c biogenesis protein CcmA; Provisional
Probab=22.39 E-value=1.7e+02 Score=28.36 Aligned_cols=45 Identities=18% Similarity=0.239 Sum_probs=32.1
Q ss_pred EEEeecccCCCCCHHHHHHHHHHHHhhcCCCCeEEEEecCCCcccc
Q 007562 114 VFGLDLALHCDIDVYQFKFFAELVKEQVGERDSVIIMTHEPNWLLD 159 (598)
Q Consensus 114 LiGLDsql~g~id~~Q~~wf~~~l~~~~~~~~~VIL~tHeP~w~~~ 159 (598)
++-||.-+ ..+|...++.+.+.+++....+..+|+.+|.+.....
T Consensus 148 ~lilDEP~-~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~~~ 192 (200)
T PRK13540 148 LWLLDEPL-VALDELSLLTIITKIQEHRAKGGAVLLTSHQDLPLNK 192 (200)
T ss_pred EEEEeCCC-cccCHHHHHHHHHHHHHHHHcCCEEEEEeCCchhccc
Confidence 56667543 4558877888888886533457789999999887763
No 109
>PRK09968 serine/threonine-specific protein phosphatase 2; Provisional
Probab=21.94 E-value=47 Score=33.32 Aligned_cols=12 Identities=25% Similarity=0.235 Sum_probs=10.0
Q ss_pred ceeEEEcCccCC
Q 007562 181 RCKLRIAGDMHH 192 (598)
Q Consensus 181 rV~L~LSGH~Hh 192 (598)
..++++.||+|.
T Consensus 179 ~~~~vv~GHTh~ 190 (218)
T PRK09968 179 GADYFIFGHMMF 190 (218)
T ss_pred CCCEEEECCCCc
Confidence 457899999995
No 110
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=21.81 E-value=1.7e+02 Score=28.02 Aligned_cols=40 Identities=23% Similarity=0.243 Sum_probs=19.0
Q ss_pred EEEeecccCCCCCHHHHHHHHHHHHhhcCCCCeEEEEecCC
Q 007562 114 VFGLDLALHCDIDVYQFKFFAELVKEQVGERDSVIIMTHEP 154 (598)
Q Consensus 114 LiGLDsql~g~id~~Q~~wf~~~l~~~~~~~~~VIL~tHeP 154 (598)
++-||--+ ..+|....+.+.+++++....+..||+++|.+
T Consensus 148 llllDEPt-~~LD~~~~~~~~~~l~~~~~~~~tili~sH~~ 187 (190)
T TIGR01166 148 VLLLDEPT-AGLDPAGREQMLAILRRLRAEGMTVVISTHDV 187 (190)
T ss_pred EEEEcCCc-ccCCHHHHHHHHHHHHHHHHcCCEEEEEeecc
Confidence 44444422 33355555555555543223345566666655
No 111
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=21.67 E-value=1.5e+02 Score=28.76 Aligned_cols=30 Identities=23% Similarity=0.258 Sum_probs=13.5
Q ss_pred CCHHHHHHHHHHHHhhcCCCCeEEEEecCC
Q 007562 125 IDVYQFKFFAELVKEQVGERDSVIIMTHEP 154 (598)
Q Consensus 125 id~~Q~~wf~~~l~~~~~~~~~VIL~tHeP 154 (598)
+|...++.+.+.+++....+..||+.+|++
T Consensus 168 LD~~~~~~l~~~l~~~~~~~~tii~~tH~~ 197 (214)
T TIGR02673 168 LDPDLSERILDLLKRLNKRGTTVIVATHDL 197 (214)
T ss_pred CCHHHHHHHHHHHHHHHHcCCEEEEEeCCH
Confidence 344444455554443222344455555554
No 112
>cd00144 MPP_PPP_family phosphoprotein phosphatases of the metallophosphatase superfamily, metallophosphatase domain. The PPP (phosphoprotein phosphatase) family is one of two known protein phosphatase families specific for serine and threonine. This family includes: PP1, PP2A, PP2B (calcineurin), PP4, PP5, PP6, PP7, Bsu1, RdgC, PrpE, PrpA/PrpB, and ApA4 hydrolase. The PPP catalytic domain is defined by three conserved motifs (-GDXHG-, -GDXVDRG- and -GNHE-). The PPP enzyme family is ancient with members found in all eukaryotes, and in most bacterial and archeal genomes. Dephosphorylation of phosphoserines and phosphothreonines on target proteins plays a central role in the regulation of many cellular processes. PPPs belong to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate
Probab=21.41 E-value=75 Score=31.01 Aligned_cols=12 Identities=25% Similarity=0.562 Sum_probs=10.3
Q ss_pred eEEecCCCCCCC
Q 007562 65 QCYIIPGNHDWF 76 (598)
Q Consensus 65 ~~~~~~gnhd~~ 76 (598)
.++.|.||||.+
T Consensus 57 ~~~~l~GNHe~~ 68 (225)
T cd00144 57 NVILLRGNHEDM 68 (225)
T ss_pred cEEEEccCchhh
Confidence 399999999974
No 113
>TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA. This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c.
Probab=21.40 E-value=1.9e+02 Score=27.89 Aligned_cols=40 Identities=20% Similarity=0.339 Sum_probs=18.0
Q ss_pred EEEeecccCCCCCHHHHHHHHHHHHhhcCCCCeEEEEecCC
Q 007562 114 VFGLDLALHCDIDVYQFKFFAELVKEQVGERDSVIIMTHEP 154 (598)
Q Consensus 114 LiGLDsql~g~id~~Q~~wf~~~l~~~~~~~~~VIL~tHeP 154 (598)
++-||.-+ ..+|....+.+.+++.+....+..||+++|++
T Consensus 148 llllDEPt-~~LD~~~~~~l~~~l~~~~~~~~tii~~sH~~ 187 (198)
T TIGR01189 148 LWILDEPT-TALDKAGVALLAGLLRAHLARGGIVLLTTHQD 187 (198)
T ss_pred EEEEeCCC-cCCCHHHHHHHHHHHHHHHhCCCEEEEEEccc
Confidence 44444322 23344444555554443223344555555555
No 114
>COG3545 Predicted esterase of the alpha/beta hydrolase fold [General function prediction only]
Probab=21.16 E-value=1.3e+02 Score=30.30 Aligned_cols=65 Identities=22% Similarity=0.250 Sum_probs=36.1
Q ss_pred CeEEecCCCCCCCCChHHHHHhhcccCCCCcccCCCCCceEEEECCCcEEEEEeecccCCCCCHHHHHHHHHHHHhhcCC
Q 007562 64 PQCYIIPGNHDWFDGLNTFMRFICHKSWLGGWFMPQKKSYFALQLPKGWWVFGLDLALHCDIDVYQFKFFAELVKEQVGE 143 (598)
Q Consensus 64 p~~~~~~gnhd~~~gL~aF~r~F~~~~~l~gw~~~Q~~sYfAl~Lp~~wwLiGLDsql~g~id~~Q~~wf~~~l~~~~~~ 143 (598)
+.++.|||=+. .|+.-|.+. |--++|+ ++.+=.++=. .+.--+|.+++-++.-..
T Consensus 3 ~~~lIVpG~~~--Sg~~HWq~~------------------we~~l~~-a~rveq~~w~----~P~~~dWi~~l~~~v~a~ 57 (181)
T COG3545 3 TDVLIVPGYGG--SGPNHWQSR------------------WESALPN-ARRVEQDDWE----APVLDDWIARLEKEVNAA 57 (181)
T ss_pred ceEEEecCCCC--CChhHHHHH------------------HHhhCcc-chhcccCCCC----CCCHHHHHHHHHHHHhcc
Confidence 45899999876 555566443 2223332 3222222101 112246998887643344
Q ss_pred CCeEEEEecC
Q 007562 144 RDSVIIMTHE 153 (598)
Q Consensus 144 ~~~VIL~tHe 153 (598)
++++||++|.
T Consensus 58 ~~~~vlVAHS 67 (181)
T COG3545 58 EGPVVLVAHS 67 (181)
T ss_pred CCCeEEEEec
Confidence 6779999995
No 115
>PRK13538 cytochrome c biogenesis protein CcmA; Provisional
Probab=20.41 E-value=1.8e+02 Score=28.28 Aligned_cols=44 Identities=20% Similarity=0.228 Sum_probs=27.6
Q ss_pred EEEeecccCCCCCHHHHHHHHHHHHhhcCCCCeEEEEecCCCccc
Q 007562 114 VFGLDLALHCDIDVYQFKFFAELVKEQVGERDSVIIMTHEPNWLL 158 (598)
Q Consensus 114 LiGLDsql~g~id~~Q~~wf~~~l~~~~~~~~~VIL~tHeP~w~~ 158 (598)
++-||--+ ..+|..-++.+.+++++....+..||+++|++....
T Consensus 150 llllDEPt-~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~i~ 193 (204)
T PRK13538 150 LWILDEPF-TAIDKQGVARLEALLAQHAEQGGMVILTTHQDLPVA 193 (204)
T ss_pred EEEEeCCC-ccCCHHHHHHHHHHHHHHHHCCCEEEEEecChhhhc
Confidence 55666533 445776677777766543334567888888776654
No 116
>COG3540 PhoD Phosphodiesterase/alkaline phosphatase D [Inorganic ion transport and metabolism]
Probab=20.24 E-value=3e+02 Score=31.85 Aligned_cols=63 Identities=10% Similarity=0.156 Sum_probs=35.2
Q ss_pred CCHHHHHHHHHHHHhh------cCCCCeEEEEecCCC--------ccccccccCCCccchH-HHHHhhhCCce--eEEEc
Q 007562 125 IDVYQFKFFAELVKEQ------VGERDSVIIMTHEPN--------WLLDWYFNNVSGKNVK-HLICDYLKGRC--KLRIA 187 (598)
Q Consensus 125 id~~Q~~wf~~~l~~~------~~~~~~VIL~tHeP~--------w~~~~~~~~~~~~~v~-~Li~~~l~~rV--~L~LS 187 (598)
+.+.|.+||++.+.+. +..+-++.++.-.+. +.++| .++..-+ .|++-+...++ .++|+
T Consensus 337 lG~~QeqWLk~~L~~SkatWnVia~q~~~~~~~~d~~~a~~~~~a~~D~w----dGy~~~RerLl~fi~~~~~~N~V~Lt 412 (522)
T COG3540 337 LGEQQEQWLKRGLGASKATWNVIAQQMPLGLVVFDGSPATEGQEANADGW----DGYPAGRERLLRFIADRKIRNTVVLT 412 (522)
T ss_pred hhhHHHHHHHhhhhhcchhhhhhhhhcceeEeecCCCccccCccccccCc----CCCcccHHHHHHHHHhcCCCCcEEEe
Confidence 4568999999988531 234556666655554 22211 1222222 34444443334 48999
Q ss_pred CccC
Q 007562 188 GDMH 191 (598)
Q Consensus 188 GH~H 191 (598)
||+|
T Consensus 413 gDvH 416 (522)
T COG3540 413 GDVH 416 (522)
T ss_pred chhH
Confidence 9999
Done!