Query 007563
Match_columns 598
No_of_seqs 276 out of 1519
Neff 7.2
Searched_HMMs 46136
Date Thu Mar 28 12:18:59 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007563.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/007563hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0797 Actin-related protein 100.0 1E-92 2.2E-97 736.1 21.9 533 1-582 16-615 (618)
2 PTZ00452 actin; Provisional 100.0 2.8E-66 6.1E-71 554.2 33.9 322 173-582 51-375 (375)
3 PTZ00466 actin-like protein; P 100.0 3.6E-66 7.7E-71 554.0 33.7 320 173-582 58-380 (380)
4 PTZ00281 actin; Provisional 100.0 3.2E-65 6.9E-70 546.9 32.1 322 173-582 52-376 (376)
5 PTZ00004 actin-2; Provisional 100.0 1.5E-63 3.3E-68 534.5 33.8 323 173-582 52-378 (378)
6 KOG0679 Actin-related protein 100.0 1.1E-64 2.4E-69 513.7 21.1 355 172-581 55-425 (426)
7 KOG0676 Actin and related prot 100.0 7.3E-64 1.6E-68 521.8 27.1 318 172-582 52-372 (372)
8 PTZ00280 Actin-related protein 100.0 4.1E-61 8.8E-66 521.8 33.7 329 173-581 53-409 (414)
9 PF00022 Actin: Actin; InterP 100.0 6.3E-62 1.4E-66 524.7 23.2 336 173-582 45-393 (393)
10 smart00268 ACTIN Actin. ACTIN 100.0 2.3E-58 4.9E-63 494.1 33.4 325 173-582 46-373 (373)
11 cd00012 ACTIN Actin; An ubiqui 100.0 1.8E-57 4E-62 486.7 32.1 325 172-580 44-371 (371)
12 KOG0677 Actin-related protein 100.0 5.8E-58 1.2E-62 442.6 19.5 323 172-579 51-385 (389)
13 COG5277 Actin and related prot 100.0 5.8E-56 1.2E-60 478.2 27.8 365 172-582 52-444 (444)
14 KOG0680 Actin-related protein 100.0 1.1E-51 2.4E-56 409.6 23.9 336 175-582 43-399 (400)
15 KOG0678 Actin-related protein 100.0 9.5E-40 2.1E-44 325.1 14.1 328 172-579 57-407 (415)
16 KOG0681 Actin-related protein 100.0 5E-37 1.1E-41 322.6 18.7 351 189-584 80-642 (645)
17 PRK13927 rod shape-determining 100.0 2.2E-28 4.9E-33 258.4 16.5 271 174-555 44-323 (334)
18 PRK13930 rod shape-determining 100.0 1.6E-27 3.4E-32 252.0 19.8 274 173-555 46-327 (335)
19 TIGR00904 mreB cell shape dete 99.9 6.5E-26 1.4E-30 239.6 14.6 274 173-555 44-326 (333)
20 PRK13929 rod-share determining 99.9 6.1E-23 1.3E-27 217.0 17.7 263 174-553 43-323 (335)
21 PRK13928 rod shape-determining 99.9 3.3E-22 7.2E-27 211.6 13.9 272 174-555 42-322 (336)
22 PF06723 MreB_Mbl: MreB/Mbl pr 99.8 1.8E-20 3.8E-25 195.6 17.4 269 174-554 40-319 (326)
23 COG1077 MreB Actin-like ATPase 99.6 2.9E-14 6.3E-19 144.7 14.4 268 173-553 46-328 (342)
24 TIGR02529 EutJ ethanolamine ut 99.4 1.6E-11 3.4E-16 124.0 17.9 135 192-363 28-165 (239)
25 PRK15080 ethanolamine utilizat 99.2 6.7E-10 1.4E-14 114.0 16.2 138 188-362 51-191 (267)
26 CHL00094 dnaK heat shock prote 98.7 5.3E-08 1.2E-12 111.5 12.3 91 239-334 138-236 (621)
27 PRK09472 ftsA cell division pr 98.7 6.6E-08 1.4E-12 105.7 11.3 94 249-365 165-263 (420)
28 PTZ00400 DnaK-type molecular c 98.7 1.5E-07 3.3E-12 108.4 14.5 91 239-334 177-275 (663)
29 TIGR02350 prok_dnaK chaperone 98.7 9.9E-08 2.2E-12 108.9 11.8 91 239-334 133-232 (595)
30 TIGR01991 HscA Fe-S protein as 98.7 4.9E-08 1.1E-12 111.2 9.1 111 215-336 114-232 (599)
31 PRK00290 dnaK molecular chaper 98.7 2.5E-07 5.5E-12 106.1 14.3 91 239-334 136-234 (627)
32 TIGR01174 ftsA cell division p 98.6 1.3E-07 2.9E-12 101.7 11.1 95 250-367 158-257 (371)
33 PLN03184 chloroplast Hsp70; Pr 98.6 6.3E-07 1.4E-11 103.4 16.7 91 239-334 175-273 (673)
34 PTZ00186 heat shock 70 kDa pre 98.6 4.7E-07 1E-11 103.9 15.0 91 239-334 163-261 (657)
35 PRK13411 molecular chaperone D 98.6 2.3E-07 4.9E-12 106.8 10.7 109 215-334 118-235 (653)
36 PRK13410 molecular chaperone D 98.6 2.3E-07 4.9E-12 106.9 10.2 109 215-334 120-236 (668)
37 PTZ00009 heat shock 70 kDa pro 98.5 6.3E-07 1.4E-11 103.3 13.0 91 239-334 143-243 (653)
38 PRK05183 hscA chaperone protei 98.5 4E-07 8.6E-12 104.2 9.8 92 239-335 152-251 (616)
39 PRK01433 hscA chaperone protei 98.5 8.7E-07 1.9E-11 100.8 11.4 92 239-335 144-243 (595)
40 PRK11678 putative chaperone; P 98.3 2.4E-05 5.2E-10 86.2 17.1 86 239-330 152-260 (450)
41 PF00012 HSP70: Hsp70 protein; 98.2 4.6E-07 1E-11 103.4 2.5 92 239-335 138-238 (602)
42 COG0849 ftsA Cell division ATP 98.2 8.4E-06 1.8E-10 88.1 11.9 90 254-365 168-262 (418)
43 COG0443 DnaK Molecular chapero 98.0 4.9E-05 1.1E-09 86.2 13.2 150 173-333 51-220 (579)
44 TIGR01175 pilM type IV pilus a 98.0 0.00018 4E-09 76.5 16.6 91 249-362 142-244 (348)
45 PF11104 PilM_2: Type IV pilus 97.2 0.0012 2.7E-08 70.2 9.4 124 212-362 87-236 (340)
46 PRK13917 plasmid segregation p 97.1 0.0021 4.5E-08 68.6 9.7 69 263-335 151-232 (344)
47 TIGR03739 PRTRC_D PRTRC system 96.8 0.0052 1.1E-07 64.9 9.0 114 213-336 84-215 (320)
48 COG4972 PilM Tfp pilus assembl 95.4 0.32 6.9E-06 50.8 13.5 116 211-333 99-236 (354)
49 COG4820 EutJ Ethanolamine util 95.1 0.012 2.7E-07 56.8 2.0 110 221-361 83-195 (277)
50 PRK10719 eutA reactivating fac 94.9 0.065 1.4E-06 58.7 7.2 109 211-327 64-183 (475)
51 KOG0103 Molecular chaperones H 94.3 1.5 3.2E-05 50.0 16.0 116 210-335 116-246 (727)
52 KOG0100 Molecular chaperones G 94.1 0.33 7.2E-06 51.7 10.0 111 239-362 175-298 (663)
53 PF06277 EutA: Ethanolamine ut 90.5 1.3 2.8E-05 48.7 9.4 116 191-319 50-176 (473)
54 PF06406 StbA: StbA protein; 90.5 0.3 6.4E-06 51.6 4.4 70 262-335 137-212 (318)
55 KOG0101 Molecular chaperones H 85.0 3.1 6.8E-05 47.4 8.3 89 239-332 146-244 (620)
56 PF08841 DDR: Diol dehydratase 83.8 5.1 0.00011 41.2 8.3 92 249-362 94-191 (332)
57 KOG0104 Molecular chaperones G 83.2 5.6 0.00012 45.9 9.2 92 239-335 161-275 (902)
58 PF01968 Hydantoinase_A: Hydan 82.7 1.6 3.5E-05 45.4 4.6 32 277-308 69-101 (290)
59 PF02541 Ppx-GppA: Ppx/GppA ph 82.4 2.2 4.8E-05 44.1 5.4 70 254-330 75-152 (285)
60 PF14450 FtsA: Cell division p 82.2 4.7 0.0001 36.0 6.8 58 287-366 2-70 (120)
61 TIGR03123 one_C_unchar_1 proba 70.7 4.7 0.0001 42.5 4.0 31 279-309 123-153 (318)
62 KOG0102 Molecular chaperones m 70.2 30 0.00064 38.9 9.9 90 241-334 164-261 (640)
63 TIGR03192 benz_CoA_bzdQ benzoy 64.5 2.7 5.8E-05 43.8 0.7 51 494-555 237-287 (293)
64 TIGR02261 benz_CoA_red_D benzo 64.1 4.7 0.0001 41.4 2.3 50 498-554 213-262 (262)
65 COG4819 EutA Ethanolamine util 63.9 25 0.00053 37.2 7.4 105 211-319 63-178 (473)
66 TIGR03706 exo_poly_only exopol 63.8 9.6 0.00021 39.8 4.7 40 285-330 126-165 (300)
67 TIGR02259 benz_CoA_red_A benzo 63.2 5.4 0.00012 43.2 2.6 53 495-554 380-432 (432)
68 PRK11031 guanosine pentaphosph 62.9 26 0.00057 39.4 8.2 39 285-329 133-171 (496)
69 TIGR03286 methan_mark_15 putat 57.5 3.9 8.4E-05 44.4 0.4 68 474-555 335-402 (404)
70 PF08735 DUF1786: Putative pyr 55.6 23 0.0005 36.1 5.5 46 261-307 138-190 (254)
71 COG1548 Predicted transcriptio 52.3 9.6 0.00021 38.8 2.1 23 284-306 130-152 (330)
72 TIGR00241 CoA_E_activ CoA-subs 51.2 80 0.0017 31.8 8.8 99 211-332 33-136 (248)
73 COG0248 GppA Exopolyphosphatas 50.0 14 0.00031 41.3 3.3 42 283-330 128-169 (492)
74 PRK10854 exopolyphosphatase; P 45.9 30 0.00066 39.0 5.2 40 284-329 137-176 (513)
75 PRK13317 pantothenate kinase; 40.9 14 0.0003 38.3 1.3 73 474-555 200-273 (277)
76 TIGR00241 CoA_E_activ CoA-subs 38.2 25 0.00054 35.5 2.8 42 499-552 206-247 (248)
77 COG1924 Activator of 2-hydroxy 36.4 13 0.00027 40.0 0.2 44 500-555 346-389 (396)
78 COG4012 Uncharacterized protei 34.5 62 0.0014 33.2 4.7 40 268-307 207-250 (342)
79 COG0145 HyuA N-methylhydantoin 33.8 40 0.00088 39.4 3.8 31 278-308 270-302 (674)
80 PF03702 UPF0075: Uncharacteri 32.6 25 0.00055 37.8 1.8 25 497-521 285-309 (364)
81 PRK03011 butyrate kinase; Prov 27.6 35 0.00075 36.7 1.8 24 18-41 2-25 (358)
82 KOG2960 Protein involved in th 24.8 37 0.0008 33.8 1.2 82 491-580 70-155 (328)
83 PRK13333 pantothenate kinase; 24.5 84 0.0018 31.1 3.7 27 275-304 77-103 (206)
84 PF01869 BcrAD_BadFG: BadF/Bad 21.9 2E+02 0.0043 29.1 6.1 84 212-307 41-129 (271)
85 TIGR02707 butyr_kinase butyrat 21.0 54 0.0012 35.1 1.7 51 260-311 146-200 (351)
86 smart00732 YqgFc Likely ribonu 20.9 2.5E+02 0.0053 23.3 5.5 46 286-335 3-49 (99)
87 PF00871 Acetate_kinase: Aceto 20.8 59 0.0013 35.4 2.0 32 19-50 1-32 (388)
88 PRK09585 anmK anhydro-N-acetyl 20.6 74 0.0016 34.4 2.6 23 498-520 288-310 (365)
89 PRK02308 uvsE putative UV dama 20.3 67 0.0015 33.7 2.2 16 14-29 140-158 (303)
No 1
>KOG0797 consensus Actin-related protein [Cytoskeleton]
Probab=100.00 E-value=1e-92 Score=736.09 Aligned_cols=533 Identities=41% Similarity=0.695 Sum_probs=400.5
Q ss_pred CCcccccCchhhhhhcCCCEEEEcCCCCeeeeecCCCCCCCccceeeEEecCCCCccccccccccccccchhh-------
Q 007563 1 MDYLKTVVPSQLIAERGSNLVVINPGSANIRIGLAQHDTPLNIPHCIARRTSQVPKRNVVDQMLNSQVTTSQH------- 73 (598)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~iVihpGS~~lriG~asd~~P~~ip~~iA~~~~~~~~~~~~~~~~~~~~~~~~~------- 73 (598)
++|.+.+-++|...+++.|+||||+||+|+|||+|+|.+|.++||||||+.++. +.+++++....+.++
T Consensus 16 ~p~~~g~ee~q~~e~ed~k~ivih~gsqnlrig~a~d~np~tv~~~iar~~rap----~sdr~~~~p~l~p~~~e~~n~~ 91 (618)
T KOG0797|consen 16 QPYLKGVEETQILEEEDAKLIVIHLGSQNLRIGLAMDENPFTVPNCIARYIRAP----VSDRMLNTPVLTPQHVEERNYN 91 (618)
T ss_pred CCcccCCCccccccccCCCeeEecCCcchhhccccccCCCcccccceeecccCc----hhhhcccCcCCCcccccccccc
Confidence 478999999999999999999999999999999999999999999999998762 222222211111111
Q ss_pred --hhHHHHHHHHHhhcCCCcchHhhhcCCCCcccccccccccccccccccccccccccCCCCCCCcccccccccccCccc
Q 007563 74 --VERERAYDVIASLMKIPFLDEEVANNSFPRKMGRVDAFNQQNSRKDVAFSWTNVYEKEPMPSTALESSSSMNHGIIKE 151 (598)
Q Consensus 74 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~n~~~~pe 151 (598)
.++++.....++.++.. +.+++ .|+.-.|.+.++++||+-.++|
T Consensus 92 ~~~ef~~~lll~~s~lss~----------~~~kk------------------------~ri~v~~~~q~lkn~n~~S~ae 137 (618)
T KOG0797|consen 92 SAAEFLKILLLDESSLSSS----------ASRKK------------------------GRIDVYNQAQTLKNDNVASPAE 137 (618)
T ss_pred chhhhhHHHHHhhhhhhhH----------HHhhc------------------------CcccccCchHHhhcccccCccc
Confidence 22222222112222211 11122 2333346778888999999999
Q ss_pred ccCCCC-Ccccccccccc------ccCCceEEccccccCCCCCCceEecceecCeeeec-CCCCccccHHHHHHHHHHHh
Q 007563 152 SMGQHR-NTDIKELNSSE------RKFREFICGEEALRVSPTEPYCIHRPIRRGHLNIS-QHYPMQQVLEDLYAIWDWIL 223 (598)
Q Consensus 152 ~~~~~~-~~~~~~~~~~~------~~~~~~~vGeeAl~~~~~~~~~l~~Pi~~G~~n~~-~~~s~~~~~~dle~i~~~~l 223 (598)
.+|..+ +.-+.+|.+.+ ...++..+|++|..++ +|.|++||++|.||++ +|+|+|+.++|+++||+|+|
T Consensus 138 tvP~ps~~~a~~~wld~e~~~hv~v~c~kr~~~ee~n~i~---~y~l~~Pir~G~fNv~~~y~Slq~l~~dlt~il~yaL 214 (618)
T KOG0797|consen 138 TVPDPSASEAVPDWLDSEDTSHVKVKCRKRIFGEEANKIS---PYCLYHPIRRGHFNVSPPYYSLQRLCEDLTAILDYAL 214 (618)
T ss_pred cCCCCCCCcCCCCccccccchHHHHHHHHHHhhhhhhcCC---cceeecccccceeccCCcchhHHHHHHHHHHHHHHHH
Confidence 998433 22222332211 1334556777777774 8999999999999997 78899999999999999999
Q ss_pred hhhcCCCCCCCCccceEEecCCCCCcHHHHHHHHHHHHhcCCCeEeeehhhHHHHhhcCCceEEEEEeCCCcEEEEEeeC
Q 007563 224 TEKLHIPRSERNLYSAILVLPESFDNREIKEMLSIVLRDLRFASAVVHQEGLAAVFGNGLSTACVVNMGAQVTSVICVED 303 (598)
Q Consensus 224 ~~~L~i~~~~~~~y~~VLvip~~~~~~~vr~l~ellfe~~~f~~v~~~qesv~a~fgaG~~sa~VVDiGa~~TsV~pV~d 303 (598)
.++|+|+++.+.+|++|||+||.|+++++++++.++|.+|+|.++.++|||+||+||+|++++||||||||+|+|+||+|
T Consensus 215 ~e~L~Ip~~kl~qy~aVlVVpD~f~r~hveefl~ilL~eL~F~~~~v~QESlaatfGaGlss~CVVdiGAQkTsIaCVEd 294 (618)
T KOG0797|consen 215 LEKLHIPHKKLFQYHAVLVVPDTFDRRHVEEFLTILLGELGFNSAVVHQESLAATFGAGLSSACVVDIGAQKTSIACVED 294 (618)
T ss_pred HHhcCCChhHhcceeEEEEecchhhHHHHHHHHHHHHHHhccceEEEEhhhhHHHhcCCccceeEEEccCcceeEEEeec
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CeeeccCcEEeccccccChHHHHHHHHHHHHhcCCCCCcccccccchhhHHHHHHHHHHceeccCCccccccc-cccccC
Q 007563 304 GVALPNTEKTLPFGGEVQILDISRCLLWTQRHHQTWPQIRTDILTKAMDLLMLNRIKESYCEIKEGEIDAVAV-VHSYED 382 (598)
Q Consensus 304 G~~l~~s~~~l~~GG~~~~~dit~~l~~lL~~~~~~p~~~~~~l~~~~d~~l~e~lKe~~c~v~~~~~~~~~~-~~~~~~ 382 (598)
|.++++++++|+|||+ |||++|.|+|++. .|| |+++++...+||.++++|||+||++..+++.++.. +..+++
T Consensus 295 Gvs~~ntri~L~YGGd----Ditr~f~~ll~rs-~FP-y~d~~v~~~~d~lLl~~LKe~Fc~l~~a~~~vQ~~~F~~R~p 368 (618)
T KOG0797|consen 295 GVSLPNTRIILPYGGD----DITRCFLWLLRRS-GFP-YQDCDVLAPIDWLLLNQLKEKFCHLRAAELGVQLTVFSYREP 368 (618)
T ss_pred CccccCceEEeccCCc----hHHHHHHHHHHhc-CCC-cccccccccccHHHHHHHHHHhccccHhhhhhhhhhhhccCC
Confidence 9999999999999999 9999999999775 476 57788888999999999999999999887665422 223333
Q ss_pred CCCCCCcceeee---eccCCCCCCCCCcccCCCC--------CCCCCCCCCCCcccccCCCccccCCC----CCCCCCCC
Q 007563 383 GMPPGSHKTRLI---ALNVPPMGLFYPKLLVPDV--------YPPPPRSWFNDYEDMLEDTWHTDFPR----RSDISDNF 447 (598)
Q Consensus 383 ~~p~~~~k~~~~---~~~~aP~~lF~P~~~~~~~--------~~~p~~~~~~d~~d~~~d~~~~~~~e----r~~~~E~l 447 (598)
..| +.+|+|+ ++++|||++|+|.+|..+. +++|.+.+..|++-++.+++....+. +..+...+
T Consensus 369 n~~--~~kytfk~~DE~mlAPlaLF~P~lf~~~~tk~~~~q~~~q~d~~d~fd~e~~~~~~~~~~~~~~g~~~l~ls~~i 446 (618)
T KOG0797|consen 369 NPP--TLKYTFKLGDEVMLAPLALFYPNLFVIEGTKSHKNQSFPQPDREDLFDYEYLLEDTWKQDFGGGGNDGLQLSDSI 446 (618)
T ss_pred CCc--ceeeeeeccchhhccchhhhhhhhhhccccccccccccCCCCcccccchhhhhhhcccccccccccccccccccc
Confidence 333 5677775 5789999999999997654 22333322222222222222221110 00000000
Q ss_pred -CCCCCCC-CC-----------CCCCCCc----------cC--------CCCCcccCCCHHHHHHHHHhcCCChhhHHHh
Q 007563 448 -YPGINVG-LP-----------MWESYPV----------LT--------TKPKKEEKIGLAEAVTSSILSTGRIDLQRKL 496 (598)
Q Consensus 448 -fp~~~~~-~~-----------~~~~~~~----------~~--------~~~~~~~~~~L~~aI~~sI~~~~~~d~r~~L 496 (598)
|.+.+++ +| ..+.+.. .+ ...+..-..+|+++|+.||..|...|.+++|
T Consensus 447 ~~~~~~~~~l~~~~d~~Elg~t~~d~f~p~~~s~~gslaa~~i~n~~~~~~~f~gl~l~ldqsii~sid~~~sdd~~rKl 526 (618)
T KOG0797|consen 447 GFSNRIRDQLPEKPDKEELGVTLKDNFAPLEKSIVGSLAAASIMNKKGLYESFYGLLLALDQSIISSIDSALSDDTKRKL 526 (618)
T ss_pred cccccccccccccccchhhccccccccCCchhhhhhhhhhhhhhcccceeccccchhhccchhHHHhhhhhccchhhHhh
Confidence 0000000 00 0000000 00 0001112346889999999999889999999
Q ss_pred hcCeEEecCCCCCCChHHHHHHHHHhhCCC-CCCcceEEEcCCC--CCCccceEeceeeeccccCccceeeeHHHHHhcC
Q 007563 497 FCSIQLIGGVALTGGLIPAVEERVLHAIPS-NEAIDMVEVLQSR--TNPTYVSWKGGAVLGILDFGRDAWIHREDWIRNG 573 (598)
Q Consensus 497 ~~nIvLvGG~S~ipG~~~rL~~eL~~~~p~-~~~i~~V~v~~~~--~dp~~~aWkGgSIla~L~s~~~~wItk~eyee~G 573 (598)
|++|+++||+.++|||.+.||+|+...+|+ ...++.|.|++++ |||++.+||||+|||.|+..+|+||++.||..+|
T Consensus 527 ~sSil~Vgga~~~~g~~~~LEeRi~n~~pp~~~~I~~VsVip~prdMdp~~VaWKGaaIla~l~~~~ELwI~~~dW~~~G 606 (618)
T KOG0797|consen 527 FSSILLVGGAGLFPGLVAALEERILNAIPPGREAIDTVSVIPPPRDMDPQFVAWKGAAILAILDFVRELWIENSDWQVHG 606 (618)
T ss_pred hhHHHhhcccccchhHHHHHHHHHhccCCccccccCceeecCCCcCCCchheEecchhhhhHHHHHHHHheechhHhhhh
Confidence 999999999999999999999999998887 4457889999976 9999999999999999999999999999999999
Q ss_pred cceeeeccc
Q 007563 574 IHIGSGRKY 582 (598)
Q Consensus 574 ~~i~~~K~~ 582 (598)
.|++..||+
T Consensus 607 ~RvL~~k~~ 615 (618)
T KOG0797|consen 607 VRVLQYKKY 615 (618)
T ss_pred hhhhhhccc
Confidence 999999997
No 2
>PTZ00452 actin; Provisional
Probab=100.00 E-value=2.8e-66 Score=554.16 Aligned_cols=322 Identities=21% Similarity=0.374 Sum_probs=275.7
Q ss_pred ceEEccccccCCCCCCceEecceecCeeeecCCCCccccHHHHHHHHHHHhhhhcCCCCCCCCccceEEecCCCCCcHHH
Q 007563 173 EFICGEEALRVSPTEPYCIHRPIRRGHLNISQHYPMQQVLEDLYAIWDWILTEKLHIPRSERNLYSAILVLPESFDNREI 252 (598)
Q Consensus 173 ~~~vGeeAl~~~~~~~~~l~~Pi~~G~~n~~~~~s~~~~~~dle~i~~~~l~~~L~i~~~~~~~y~~VLvip~~~~~~~v 252 (598)
++++|++|... ...+.+++||++|.+. ||+++|.||+|+|.+.|+++|+++ +||+++++++++..
T Consensus 51 ~~~iG~~~~~~--~~~~~l~~Pi~~G~I~---------dwd~~e~iw~~~f~~~l~v~p~~~----pvlitE~~~~~~~~ 115 (375)
T PTZ00452 51 EYYVGEEAQAK--RGVLAIKEPIQNGIIN---------SWDDIEIIWHHAFYNELCMSPEDQ----PVFMTDAPMNSKFN 115 (375)
T ss_pred ceEEChhhhcc--ccCcEEcccCcCCEEc---------CHHHHHHHHHHHHHhhcCCCcccC----ceeeecCCCCCHHH
Confidence 56899998753 4679999999999998 999999999999999999999998 79999999998888
Q ss_pred HH-HHHHHHHhcCCCeEeeehhhHHHHhhcCCceEEEEEeCCCcEEEEEeeCCeeeccCcEEeccccccChHHHHHHHHH
Q 007563 253 KE-MLSIVLRDLRFASAVVHQEGLAAVFGNGLSTACVVNMGAQVTSVICVEDGVALPNTEKTLPFGGEVQILDISRCLLW 331 (598)
Q Consensus 253 r~-l~ellfe~~~f~~v~~~qesv~a~fgaG~~sa~VVDiGa~~TsV~pV~dG~~l~~s~~~l~~GG~~~~~dit~~l~~ 331 (598)
|+ |+|+|||.|++|++++..++++|+|++|++||+|||+|++.|+|+||+||++++++..++++||. ++|++|.+
T Consensus 116 Re~l~eilFE~~~vp~~~~~~~~~lslya~g~~tglVVDiG~~~t~v~PV~dG~~l~~~~~r~~~gG~----~lt~~L~~ 191 (375)
T PTZ00452 116 RERMTQIMFETFNTPCLYISNEAVLSLYTSGKTIGLVVDSGEGVTHCVPVFEGHQIPQAITKINLAGR----LCTDYLTQ 191 (375)
T ss_pred HHHHHHHHhhccCCceEEEechHHHHHHHCCCceeeeecCCCCcceEEEEECCEEeccceEEeeccch----HHHHHHHH
Confidence 86 99999999999999999999999999999999999999999999999999999999999999999 99999999
Q ss_pred HHHhcCCCCCcccccccchhhHHHHHHHHHHceeccCCccccccccccccCCCCCCCcceeeeeccCCCCCCCCCcccCC
Q 007563 332 TQRHHQTWPQIRTDILTKAMDLLMLNRIKESYCEIKEGEIDAVAVVHSYEDGMPPGSHKTRLIALNVPPMGLFYPKLLVP 411 (598)
Q Consensus 332 lL~~~~~~p~~~~~~l~~~~d~~l~e~lKe~~c~v~~~~~~~~~~~~~~~~~~p~~~~k~~~~~~~~aP~~lF~P~~~~~ 411 (598)
+|+.++. ++....+..+++++||++|+++.+..+. ...+.. .. ..
T Consensus 192 lL~~~~~-------~~~~~~~~~~~~~iKe~~c~v~~d~~~e---~~~~~~-~~-~~----------------------- 236 (375)
T PTZ00452 192 ILQELGY-------SLTEPHQRIIVKNIKERLCYTALDPQDE---KRIYKE-SN-SQ----------------------- 236 (375)
T ss_pred HHHhcCC-------CCCCHHHHHHHHHHHHHhccccCcHHHH---HHHhhc-cC-Cc-----------------------
Confidence 9976642 3444567889999999999998541110 000000 00 00
Q ss_pred CCCCCCCCCCCCCcccccCCCccccCC-CCCCCCCCCC-CCCCCCCCCCCCCCccCCCCCcccCCCHHHHHHHHHhcCCC
Q 007563 412 DVYPPPPRSWFNDYEDMLEDTWHTDFP-RRSDISDNFY-PGINVGLPMWESYPVLTTKPKKEEKIGLAEAVTSSILSTGR 489 (598)
Q Consensus 412 ~~~~~p~~~~~~d~~d~~~d~~~~~~~-er~~~~E~lf-p~~~~~~~~~~~~~~~~~~~~~~~~~~L~~aI~~sI~~~~~ 489 (598)
. ..| .+||+..+.++ ||+.++|.|| |+..| .+..||+++|.+||.+| +
T Consensus 237 ------~----~~y--~LPDg~~i~l~~er~~~~E~LF~P~~~g-----------------~~~~gi~~~i~~si~~c-~ 286 (375)
T PTZ00452 237 ------D----SPY--KLPDGNILTIKSQKFRCSEILFQPKLIG-----------------LEVAGIHHLAYSSIKKC-D 286 (375)
T ss_pred ------C----ceE--ECCCCCEEEeehHHhcCcccccChhhcC-----------------CCCCChhHHHHHHHHhC-C
Confidence 0 001 24566666666 8999999999 66544 35679999999999999 9
Q ss_pred hhhHHHhhcCeEEecCCCCCCChHHHHHHHHHhhCCCCCCcceEEEcCCCCCCccceEeceeeeccccCccceeeeHHHH
Q 007563 490 IDLQRKLFCSIQLIGGVALTGGLIPAVEERVLHAIPSNEAIDMVEVLQSRTNPTYVSWKGGAVLGILDFGRDAWIHREDW 569 (598)
Q Consensus 490 ~d~r~~L~~nIvLvGG~S~ipG~~~rL~~eL~~~~p~~~~i~~V~v~~~~~dp~~~aWkGgSIla~L~s~~~~wItk~ey 569 (598)
.|+|+.||+||+|+||+|++|||.+||++||..++|... +|+|... .++++++|+||||||+|++|+++||||+||
T Consensus 287 ~d~r~~L~~nIvL~GG~Sl~~Gf~~RL~~El~~~~p~~~---~v~v~~~-~~r~~~aW~GgSilasl~~f~~~~vtk~eY 362 (375)
T PTZ00452 287 LDLRQELCRNIVLSGGTTLFPGIANRLSNELTNLVPSQL---KIQVAAP-PDRRFSAWIGGSIQCTLSTQQPQWIKRQEY 362 (375)
T ss_pred HhHHHHhhccEEEecccccccCHHHHHHHHHHHhCCCCc---eeEEecC-CCcceeEEECchhhcCccchhhhEeEHHHH
Confidence 999999999999999999999999999999999998754 5677653 589999999999999999999999999999
Q ss_pred HhcCcceeeeccc
Q 007563 570 IRNGIHIGSGRKY 582 (598)
Q Consensus 570 ee~G~~i~~~K~~ 582 (598)
+|+|.+++++||+
T Consensus 363 eE~G~~i~~~k~~ 375 (375)
T PTZ00452 363 DEQGPSIVHRKCF 375 (375)
T ss_pred hccCcceeeeecC
Confidence 9999999999986
No 3
>PTZ00466 actin-like protein; Provisional
Probab=100.00 E-value=3.6e-66 Score=554.01 Aligned_cols=320 Identities=19% Similarity=0.364 Sum_probs=273.5
Q ss_pred ceEEccccccCCCCCCceEecceecCeeeecCCCCccccHHHHHHHHHHHhhhhcCCCCCCCCccceEEecCCCCCcHHH
Q 007563 173 EFICGEEALRVSPTEPYCIHRPIRRGHLNISQHYPMQQVLEDLYAIWDWILTEKLHIPRSERNLYSAILVLPESFDNREI 252 (598)
Q Consensus 173 ~~~vGeeAl~~~~~~~~~l~~Pi~~G~~n~~~~~s~~~~~~dle~i~~~~l~~~L~i~~~~~~~y~~VLvip~~~~~~~v 252 (598)
+++||++|... ...+.++|||++|.+. ||+++|.||+|+| ++|+++++++ +||+++++++++..
T Consensus 58 ~~~vG~~~~~~--~~~~~l~~Pi~~G~v~---------dwd~~e~iw~~~f-~~l~v~~~~~----pvllte~~~~~~~~ 121 (380)
T PTZ00466 58 NIFVGNKAEEY--RGLLKVTYPINHGIIE---------NWNDMENIWIHVY-NSMKINSEEH----PVLLTEAPLNPQKN 121 (380)
T ss_pred CeEECchhhhh--CcCceeCccccCCeEC---------CHHHHHHHHHHHH-hhcccCCccC----eEEEecCccccHHH
Confidence 47899999764 3568899999999998 9999999999998 7899998888 79999999999888
Q ss_pred HH-HHHHHHHhcCCCeEeeehhhHHHHhhcCCceEEEEEeCCCcEEEEEeeCCeeeccCcEEeccccccChHHHHHHHHH
Q 007563 253 KE-MLSIVLRDLRFASAVVHQEGLAAVFGNGLSTACVVNMGAQVTSVICVEDGVALPNTEKTLPFGGEVQILDISRCLLW 331 (598)
Q Consensus 253 r~-l~ellfe~~~f~~v~~~qesv~a~fgaG~~sa~VVDiGa~~TsV~pV~dG~~l~~s~~~l~~GG~~~~~dit~~l~~ 331 (598)
|+ |+++|||.|++|+++++.+++||+||+|++||+|||+|++.|+|+||+||+++.++..++++||+ ++|++|.+
T Consensus 122 re~~~e~lFE~~~~p~~~~~~~~~lsl~a~g~~tglVVD~G~~~t~v~PV~~G~~~~~~~~~~~~GG~----~lt~~L~~ 197 (380)
T PTZ00466 122 KEKIAEVFFETFNVPALFISIQAILSLYSCGKTNGTVLDCGDGVCHCVSIYEGYSITNTITRTDVAGR----DITTYLGY 197 (380)
T ss_pred HHHHHHHHhccCCCCeEEEecchHHHHHhcCCceEEEEeCCCCceEEEEEECCEEeecceeEecCchh----HHHHHHHH
Confidence 86 99999999999999999999999999999999999999999999999999999999999999999 99999999
Q ss_pred HHHhcCCCCCcccccccchhhHHHHHHHHHHceeccCCccccccccccccCCCCCCCcceeeeeccCCCCCCCCCcccCC
Q 007563 332 TQRHHQTWPQIRTDILTKAMDLLMLNRIKESYCEIKEGEIDAVAVVHSYEDGMPPGSHKTRLIALNVPPMGLFYPKLLVP 411 (598)
Q Consensus 332 lL~~~~~~p~~~~~~l~~~~d~~l~e~lKe~~c~v~~~~~~~~~~~~~~~~~~p~~~~k~~~~~~~~aP~~lF~P~~~~~ 411 (598)
+|+.++. .++...+..+++++||++|+++.+.-... .... .+....
T Consensus 198 lL~~~~~-------~~~~~~~~~~v~~iKe~~c~v~~d~~~e~---~~~~--~~~~~~---------------------- 243 (380)
T PTZ00466 198 LLRKNGH-------LFNTSAEMEVVKNMKENCCYVSFNMNKEK---NSSE--KALTTL---------------------- 243 (380)
T ss_pred HHHhcCC-------CCCcHHHHHHHHHHHHhCeEecCChHHHH---hhcc--ccccce----------------------
Confidence 9976652 23445678899999999999985411000 0000 000000
Q ss_pred CCCCCCCCCCCCCcccccCCCccccCC-CCCCCCCCCC-CCCCCCCCCCCCCCccCCCCCcccCCCHHHHHHHHHhcCCC
Q 007563 412 DVYPPPPRSWFNDYEDMLEDTWHTDFP-RRSDISDNFY-PGINVGLPMWESYPVLTTKPKKEEKIGLAEAVTSSILSTGR 489 (598)
Q Consensus 412 ~~~~~p~~~~~~d~~d~~~d~~~~~~~-er~~~~E~lf-p~~~~~~~~~~~~~~~~~~~~~~~~~~L~~aI~~sI~~~~~ 489 (598)
.| .+||+..+.++ ||+.++|.|| |+..| .+..||+++|.+||.+| +
T Consensus 244 ------------~y--~LPdg~~i~l~~er~~~~E~LF~P~~~g-----------------~~~~gl~~~i~~sI~~c-~ 291 (380)
T PTZ00466 244 ------------PY--ILPDGSQILIGSERYRAPEVLFNPSILG-----------------LEYLGLSELIVTSITRA-D 291 (380)
T ss_pred ------------eE--ECCCCcEEEEchHHhcCcccccCccccC-----------------CCCCCHHHHHHHHHHhC-C
Confidence 01 24566666666 8999999999 76554 35679999999999999 9
Q ss_pred hhhHHHhhcCeEEecCCCCCCChHHHHHHHHHhhCCCCCCcceEEEcCCCCCCccceEeceeeeccccCccceeeeHHHH
Q 007563 490 IDLQRKLFCSIQLIGGVALTGGLIPAVEERVLHAIPSNEAIDMVEVLQSRTNPTYVSWKGGAVLGILDFGRDAWIHREDW 569 (598)
Q Consensus 490 ~d~r~~L~~nIvLvGG~S~ipG~~~rL~~eL~~~~p~~~~i~~V~v~~~~~dp~~~aWkGgSIla~L~s~~~~wItk~ey 569 (598)
.|.|+.||+||+|+||+|++|||.+||++||..+.|... +|+|.. +.++++++|+||||||++++|+++||||+||
T Consensus 292 ~d~r~~L~~nIvL~GG~Sl~~Gf~~RL~~EL~~l~p~~~---~v~v~~-~~~r~~~aW~GgSilasl~~f~~~~itk~eY 367 (380)
T PTZ00466 292 MDLRRTLYSHIVLSGGTTMFHGFGDRLLNEIRKFAPKDI---TIRISA-PPERKFSTFIGGSILASLATFKKIWISKQEF 367 (380)
T ss_pred hhhHHHHhhcEEEeCCccccCCHHHHHHHHHHHhCCCCc---eEEEec-CCCCceeEEECchhhcCccchhhhEeEHHHH
Confidence 999999999999999999999999999999999998754 457664 3589999999999999999999999999999
Q ss_pred HhcCcceeeeccc
Q 007563 570 IRNGIHIGSGRKY 582 (598)
Q Consensus 570 ee~G~~i~~~K~~ 582 (598)
+|+|+++++||||
T Consensus 368 eE~G~~iv~rk~~ 380 (380)
T PTZ00466 368 DEYGSVILHRKTF 380 (380)
T ss_pred hhhCcHhheeecC
Confidence 9999999999986
No 4
>PTZ00281 actin; Provisional
Probab=100.00 E-value=3.2e-65 Score=546.95 Aligned_cols=322 Identities=19% Similarity=0.367 Sum_probs=274.6
Q ss_pred ceEEccccccCCCCCCceEecceecCeeeecCCCCccccHHHHHHHHHHHhhhhcCCCCCCCCccceEEecCCCCCcHHH
Q 007563 173 EFICGEEALRVSPTEPYCIHRPIRRGHLNISQHYPMQQVLEDLYAIWDWILTEKLHIPRSERNLYSAILVLPESFDNREI 252 (598)
Q Consensus 173 ~~~vGeeAl~~~~~~~~~l~~Pi~~G~~n~~~~~s~~~~~~dle~i~~~~l~~~L~i~~~~~~~y~~VLvip~~~~~~~v 252 (598)
++++|++|+.. ...+.+++||++|.+. +|++++.||+|+|.+.|+++|+++ +|||++++++++..
T Consensus 52 ~~~~g~~~~~~--~~~~~l~~Pi~~G~i~---------dwd~~e~l~~~~f~~~l~v~p~~~----pvllte~~~~~~~~ 116 (376)
T PTZ00281 52 DSYVGDEAQSK--RGILTLKYPIEHGIVT---------NWDDMEKIWHHTFYNELRVAPEEH----PVLLTEAPLNPKAN 116 (376)
T ss_pred CeEECchhhcc--ccCcEEeccCcCCEEc---------CHHHHHHHHHHHHHhhccCCCccC----eEEEecCCCCcHHH
Confidence 46899998753 4579999999999998 999999999999998999999988 79999999998888
Q ss_pred HH-HHHHHHHhcCCCeEeeehhhHHHHhhcCCceEEEEEeCCCcEEEEEeeCCeeeccCcEEeccccccChHHHHHHHHH
Q 007563 253 KE-MLSIVLRDLRFASAVVHQEGLAAVFGNGLSTACVVNMGAQVTSVICVEDGVALPNTEKTLPFGGEVQILDISRCLLW 331 (598)
Q Consensus 253 r~-l~ellfe~~~f~~v~~~qesv~a~fgaG~~sa~VVDiGa~~TsV~pV~dG~~l~~s~~~l~~GG~~~~~dit~~l~~ 331 (598)
|+ |+++|||.|+|++++++.++++|+|++|++||||||+|++.|+|+||+||+++.+++.++++||+ ++|++|.+
T Consensus 117 re~l~e~lFE~~~vp~~~~~~~~~ls~ya~g~~tglVVDiG~~~t~v~PV~dG~~~~~~~~~~~~GG~----~lt~~L~~ 192 (376)
T PTZ00281 117 REKMTQIMFETFNTPAMYVAIQAVLSLYASGRTTGIVMDSGDGVSHTVPIYEGYALPHAILRLDLAGR----DLTDYMMK 192 (376)
T ss_pred HHHHHHHHhcccCCceeEeeccHHHHHHhcCCceEEEEECCCceEEEEEEEecccchhheeeccCcHH----HHHHHHHH
Confidence 86 99999999999999999999999999999999999999999999999999999999999999999 99999999
Q ss_pred HHHhcCCCCCcccccccchhhHHHHHHHHHHceeccCCccccccccccccCCCCCCCcceeeeeccCCCCCCCCCcccCC
Q 007563 332 TQRHHQTWPQIRTDILTKAMDLLMLNRIKESYCEIKEGEIDAVAVVHSYEDGMPPGSHKTRLIALNVPPMGLFYPKLLVP 411 (598)
Q Consensus 332 lL~~~~~~p~~~~~~l~~~~d~~l~e~lKe~~c~v~~~~~~~~~~~~~~~~~~p~~~~k~~~~~~~~aP~~lF~P~~~~~ 411 (598)
+|..++ +++.+..+..+++++||++|+|+.+.-.. ...... .+. .
T Consensus 193 lL~~~~-------~~~~~~~~~~~~~~iKe~~c~v~~d~~~~---~~~~~~-~~~-~----------------------- 237 (376)
T PTZ00281 193 ILTERG-------YSFTTTAEREIVRDIKEKLAYVALDFEAE---MQTAAS-SSA-L----------------------- 237 (376)
T ss_pred HHHhcC-------CCCCcHHHHHHHHHHHHhcEEecCCchHH---HHhhhc-Ccc-c-----------------------
Confidence 997654 13444567889999999999998531100 000000 000 0
Q ss_pred CCCCCCCCCCCCCcccccCCCccccCC-CCCCCCCCCC-CCCCCCCCCCCCCCccCCCCCcccCCCHHHHHHHHHhcCCC
Q 007563 412 DVYPPPPRSWFNDYEDMLEDTWHTDFP-RRSDISDNFY-PGINVGLPMWESYPVLTTKPKKEEKIGLAEAVTSSILSTGR 489 (598)
Q Consensus 412 ~~~~~p~~~~~~d~~d~~~d~~~~~~~-er~~~~E~lf-p~~~~~~~~~~~~~~~~~~~~~~~~~~L~~aI~~sI~~~~~ 489 (598)
. ..| .+||+..+.++ ||+.++|.|| |+..+ .+..||+++|.+||.+| +
T Consensus 238 ------~----~~y--~LPdg~~i~i~~er~~~~E~LF~P~~~~-----------------~~~~gi~~~i~~sI~~~-~ 287 (376)
T PTZ00281 238 ------E----KSY--ELPDGQVITIGNERFRCPEALFQPSFLG-----------------MESAGIHETTYNSIMKC-D 287 (376)
T ss_pred ------c----eeE--ECCCCCEEEeeHHHeeCcccccChhhcC-----------------CCCCCHHHHHHHHHHhC-C
Confidence 0 001 24566666666 8999999999 65543 35679999999999999 9
Q ss_pred hhhHHHhhcCeEEecCCCCCCChHHHHHHHHHhhCCCCCCcceEEEcCCCCCCccceEeceeeeccccCccceeeeHHHH
Q 007563 490 IDLQRKLFCSIQLIGGVALTGGLIPAVEERVLHAIPSNEAIDMVEVLQSRTNPTYVSWKGGAVLGILDFGRDAWIHREDW 569 (598)
Q Consensus 490 ~d~r~~L~~nIvLvGG~S~ipG~~~rL~~eL~~~~p~~~~i~~V~v~~~~~dp~~~aWkGgSIla~L~s~~~~wItk~ey 569 (598)
.|+|+.||+||+|+||+|+||||.+||++||+.+.|... +|+|... .+|++++|+||||+|++++|+++||||+||
T Consensus 288 ~d~r~~L~~nIvl~GG~s~~~Gf~~RL~~El~~~~p~~~---~v~v~~~-~~r~~~aW~Ggsilasl~~f~~~~vtk~eY 363 (376)
T PTZ00281 288 VDIRKDLYGNVVLSGGTTMFPGIADRMNKELTALAPSTM---KIKIIAP-PERKYSVWIGGSILASLSTFQQMWISKEEY 363 (376)
T ss_pred hhHHHHHHhhccccCccccCcCHHHHHHHHHHHhCCCCc---ceEEecC-CCCceeEEECcccccCcccHhhceeeHHHH
Confidence 999999999999999999999999999999999998754 4677653 489999999999999999999999999999
Q ss_pred HhcCcceeeeccc
Q 007563 570 IRNGIHIGSGRKY 582 (598)
Q Consensus 570 ee~G~~i~~~K~~ 582 (598)
+|+|.+++++||+
T Consensus 364 ~E~G~~~~~~k~~ 376 (376)
T PTZ00281 364 DESGPSIVHRKCF 376 (376)
T ss_pred hhhCchheeeecC
Confidence 9999999999986
No 5
>PTZ00004 actin-2; Provisional
Probab=100.00 E-value=1.5e-63 Score=534.45 Aligned_cols=323 Identities=21% Similarity=0.383 Sum_probs=272.2
Q ss_pred ceEEccccccCCCCCCceEecceecCeeeecCCCCccccHHHHHHHHHHHhhhhcCCCCCCCCccceEEecCCCCCcHHH
Q 007563 173 EFICGEEALRVSPTEPYCIHRPIRRGHLNISQHYPMQQVLEDLYAIWDWILTEKLHIPRSERNLYSAILVLPESFDNREI 252 (598)
Q Consensus 173 ~~~vGeeAl~~~~~~~~~l~~Pi~~G~~n~~~~~s~~~~~~dle~i~~~~l~~~L~i~~~~~~~y~~VLvip~~~~~~~v 252 (598)
++++|++|... ...+.+++||++|.+. ||++++.||+|+|.++|++++.++ +||+++++++++..
T Consensus 52 ~~~~g~~~~~~--~~~~~l~~Pi~~G~i~---------d~d~~e~i~~~~~~~~l~v~~~~~----pvllte~~~~~~~~ 116 (378)
T PTZ00004 52 DCYVGDEAQDK--RGILTLKYPIEHGIVT---------NWDDMEKIWHHTFYNELRVAPEEH----PVLLTEAPLNPKAN 116 (378)
T ss_pred ceEECchhhcc--cccceEcccCcCCEEc---------CHHHHHHHHHHHHHhhcccCCccC----cceeecCCCCcHHH
Confidence 46899998754 3468999999999998 999999999999988999998888 69999999988887
Q ss_pred HH-HHHHHHHhcCCCeEeeehhhHHHHhhcCCceEEEEEeCCCcEEEEEeeCCeeeccCcEEeccccccChHHHHHHHHH
Q 007563 253 KE-MLSIVLRDLRFASAVVHQEGLAAVFGNGLSTACVVNMGAQVTSVICVEDGVALPNTEKTLPFGGEVQILDISRCLLW 331 (598)
Q Consensus 253 r~-l~ellfe~~~f~~v~~~qesv~a~fgaG~~sa~VVDiGa~~TsV~pV~dG~~l~~s~~~l~~GG~~~~~dit~~l~~ 331 (598)
|+ ++++|||.|+|++++++.++++|+|++|.+||||||+|++.|+|+||+||+++.+++.++++||+ ++|++|.+
T Consensus 117 r~~~~e~lFE~~~~~~~~~~~~~~ls~ya~g~~tglVVDiG~~~t~v~pV~dG~~l~~~~~~~~~GG~----~lt~~L~~ 192 (378)
T PTZ00004 117 REKMTQIMFETHNVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYSLPHAIHRLDVAGR----DLTEYMMK 192 (378)
T ss_pred HHHHHHHHHhhcCCceEEeeccHHHHHHhcCCceEEEEECCCCcEEEEEEECCEEeecceeeecccHH----HHHHHHHH
Confidence 75 99999999999999999999999999999999999999999999999999999999999999999 99999999
Q ss_pred HHHhcCCCCCcccccccchhhHHHHHHHHHHceeccCCccccccccccccCCCCCCCcceeeeeccCCCCCCCCCcccCC
Q 007563 332 TQRHHQTWPQIRTDILTKAMDLLMLNRIKESYCEIKEGEIDAVAVVHSYEDGMPPGSHKTRLIALNVPPMGLFYPKLLVP 411 (598)
Q Consensus 332 lL~~~~~~p~~~~~~l~~~~d~~l~e~lKe~~c~v~~~~~~~~~~~~~~~~~~p~~~~k~~~~~~~~aP~~lF~P~~~~~ 411 (598)
+|+.++. .+....+..+++++||++|+++.+-.+. ..... ..+. . .
T Consensus 193 lL~~~~~-------~~~~~~~~~~~~~iKe~~c~v~~d~~~~---~~~~~-~~~~-~--~-------------------- 238 (378)
T PTZ00004 193 ILHERGT-------TFTTTAEKEIVRDIKEKLCYIALDFDEE---MGNSA-GSSD-K--Y-------------------- 238 (378)
T ss_pred HHHhcCC-------CCCcHHHHHHHHHHhhcceeecCCHHHH---Hhhhh-cCcc-c--c--------------------
Confidence 9976642 2344557889999999999998531100 00000 0000 0 0
Q ss_pred CCCCCCCCCCCCCcccccCCCccccCC-CCCCCCCCCC-CCCCCCCCCCCCCCccCCCCCccc-CCCHHHHHHHHHhcCC
Q 007563 412 DVYPPPPRSWFNDYEDMLEDTWHTDFP-RRSDISDNFY-PGINVGLPMWESYPVLTTKPKKEE-KIGLAEAVTSSILSTG 488 (598)
Q Consensus 412 ~~~~~p~~~~~~d~~d~~~d~~~~~~~-er~~~~E~lf-p~~~~~~~~~~~~~~~~~~~~~~~-~~~L~~aI~~sI~~~~ 488 (598)
. ..| .+||+..+.++ +|+.++|.|| |+..+ .+ ..||+++|.+||.+|
T Consensus 239 ------~----~~y--~lPdg~~i~l~~er~~~~E~LF~P~~~~-----------------~~~~~gi~~~i~~sI~~~- 288 (378)
T PTZ00004 239 ------E----ESY--ELPDGTIITVGSERFRCPEALFQPSLIG-----------------KEEPPGIHELTFQSINKC- 288 (378)
T ss_pred ------c----eEE--ECCCCCEEEEcHHHeeCcccccChhhcC-----------------ccccCChHHHHHHHHHhC-
Confidence 0 001 24556666666 7999999999 65543 23 679999999999999
Q ss_pred ChhhHHHhhcCeEEecCCCCCCChHHHHHHHHHhhCCCCCCcceEEEcCCCCCCccceEeceeeeccccCccceeeeHHH
Q 007563 489 RIDLQRKLFCSIQLIGGVALTGGLIPAVEERVLHAIPSNEAIDMVEVLQSRTNPTYVSWKGGAVLGILDFGRDAWIHRED 568 (598)
Q Consensus 489 ~~d~r~~L~~nIvLvGG~S~ipG~~~rL~~eL~~~~p~~~~i~~V~v~~~~~dp~~~aWkGgSIla~L~s~~~~wItk~e 568 (598)
+.|+|+.|++||+|+||+|++|||.+||++||+.++|... +++|... .+|++++|+||||+|++++|+++||||+|
T Consensus 289 ~~d~r~~L~~nIvl~GG~s~~~Gf~~RL~~EL~~~~p~~~---~~~v~~~-~~~~~~aW~Ggsilas~~~f~~~~vtk~e 364 (378)
T PTZ00004 289 DIDIRKDLYGNIVLSGGTTMYRGLPERLTKELTTLAPSTM---KIKVVAP-PERKYSVWIGGSILSSLPTFQQMWVTKEE 364 (378)
T ss_pred ChhHHHHHHhhEEeccchhcCcCHHHHHHHHHHHhCCCCc---cEEEecC-CCCceeEEECcccccCccchhhhEeEHHH
Confidence 9999999999999999999999999999999999998764 4566543 58999999999999999999999999999
Q ss_pred HHhcCcceeeeccc
Q 007563 569 WIRNGIHIGSGRKY 582 (598)
Q Consensus 569 yee~G~~i~~~K~~ 582 (598)
|+|+|.++++|||+
T Consensus 365 YeE~G~~~~~rk~~ 378 (378)
T PTZ00004 365 YDESGPSIVHRKCF 378 (378)
T ss_pred HhhhCcceEEeecC
Confidence 99999999999986
No 6
>KOG0679 consensus Actin-related protein - Arp4p/Act3p [Cytoskeleton]
Probab=100.00 E-value=1.1e-64 Score=513.67 Aligned_cols=355 Identities=20% Similarity=0.355 Sum_probs=271.2
Q ss_pred CceEEccccccCCCCCCceEecceecCeeeecCCCCccccHHHHHHHHHHHhhhhcCCCCCCCCccceEEecCCCCCcHH
Q 007563 172 REFICGEEALRVSPTEPYCIHRPIRRGHLNISQHYPMQQVLEDLYAIWDWILTEKLHIPRSERNLYSAILVLPESFDNRE 251 (598)
Q Consensus 172 ~~~~vGeeAl~~~~~~~~~l~~Pi~~G~~n~~~~~s~~~~~~dle~i~~~~l~~~L~i~~~~~~~y~~VLvip~~~~~~~ 251 (598)
+.+|+|++|+..| ++++.+..||++|++. |||.++.+|+|+|.++|.++|.++ |+|+++++|+.+.
T Consensus 55 ~~~y~~~~ai~~p-r~gmEv~~~i~nGlv~---------dWD~~~~~w~~~~~~~Lk~~p~eh----P~litEp~wN~~~ 120 (426)
T KOG0679|consen 55 KGYYVDENAIHVP-RPGMEVKTPIKNGLVE---------DWDLFEMQWRYAYKNQLKVNPEEH----PVLITEPPWNTRA 120 (426)
T ss_pred cceEeechhccCC-CCCCeeccchhcCCcc---------cHHHHHHHHHHHHhhhhhcCcccc----ceeeecCCCCcHH
Confidence 4489999999987 5799999999999998 999999999999999999999998 7999999999999
Q ss_pred HHH-HHHHHHHhcCCCeEeeehhhHHHHhhcCCceEEEEEeCCCcEEEEEeeCCeeeccCcEEeccccccChHHHHHHHH
Q 007563 252 IKE-MLSIVLRDLRFASAVVHQEGLAAVFGNGLSTACVVNMGAQVTSVICVEDGVALPNTEKTLPFGGEVQILDISRCLL 330 (598)
Q Consensus 252 vr~-l~ellfe~~~f~~v~~~qesv~a~fgaG~~sa~VVDiGa~~TsV~pV~dG~~l~~s~~~l~~GG~~~~~dit~~l~ 330 (598)
+|+ ++|++||.|+||+++++.+++|++|++|++|||||||||..|+|+||+||+++.+++++.++||+ .|+..+.
T Consensus 121 ~Rek~~ElmFE~~nvPAf~L~k~~v~~AFA~GrstalVvDiGa~~~svsPV~DG~Vlqk~vvks~laGd----Fl~~~~~ 196 (426)
T KOG0679|consen 121 NREKLTELMFEKLNVPAFYLAKTAVCTAFANGRSTALVVDIGATHTSVSPVHDGYVLQKGVVKSPLAGD----FLNDQCR 196 (426)
T ss_pred HHHHHHHHHHhhcCCceEEEechHHHHHHhcCCCceEEEEecCCCceeeeeecceEeeeeeEecccchH----HHHHHHH
Confidence 986 99999999999999999999999999999999999999999999999999999999999999999 9999999
Q ss_pred HHHHhcCC--CCCccc--------ccccchhhHHHHHHHHHHceeccCCccccccccccccCCCCCCCcceeeeeccCCC
Q 007563 331 WTQRHHQT--WPQIRT--------DILTKAMDLLMLNRIKESYCEIKEGEIDAVAVVHSYEDGMPPGSHKTRLIALNVPP 400 (598)
Q Consensus 331 ~lL~~~~~--~p~~~~--------~~l~~~~d~~l~e~lKe~~c~v~~~~~~~~~~~~~~~~~~p~~~~k~~~~~~~~aP 400 (598)
++|..++. .|.|.- ....+..-....+++++.+|++....+ |+ ..|..+. ..+
T Consensus 197 q~l~~~~iei~P~y~ia~k~~v~~g~~an~~~~~~~~d~tes~~~y~~~~v--------~~------e~ke~v~---qv~ 259 (426)
T KOG0679|consen 197 QLLEPKNIEIIPMYNIASKEPVREGYPANAVLRVSIPDLTESYHNYMEQRV--------YQ------EFKESVL---QVS 259 (426)
T ss_pred HHHhhcCcccCcHHHhhhcccccccCcchhhhcCChhHHHHHHHHHHHHHH--------HH------HHHHHHH---hcc
Confidence 99887632 222110 000000001112233333332221000 00 0000000 001
Q ss_pred CCCCCCcccCCCCCCCCCCCCCCCcccccCCCccccCC-CCCCCCCCCC-CCCCCCCCCCCCCCccCCCCCcccCCCHHH
Q 007563 401 MGLFYPKLLVPDVYPPPPRSWFNDYEDMLEDTWHTDFP-RRSDISDNFY-PGINVGLPMWESYPVLTTKPKKEEKIGLAE 478 (598)
Q Consensus 401 ~~lF~P~~~~~~~~~~p~~~~~~d~~d~~~d~~~~~~~-er~~~~E~lf-p~~~~~~~~~~~~~~~~~~~~~~~~~~L~~ 478 (598)
..-|+.+... ..|+. ...+|++++.+++ +|+++||.|| |+...+++..... ........||.+
T Consensus 260 dtp~de~~~~----~i~~~------~~efP~g~~~~~G~er~ripe~lF~Ps~v~~~s~~~~~-----~~~~n~~lG~~~ 324 (426)
T KOG0679|consen 260 DTPFDEEVAA----QIPTK------HFEFPDGYTLDFGAERFRIPEYLFKPSLVKSSSKEAGA-----TSHINTMLGLPH 324 (426)
T ss_pred CCCCcccccc----cCCCc------cccCCCCcccccCcceeecchhhcCcchhccccccccC-----CCCCccccCchH
Confidence 1111111100 01111 1246778888888 8999999999 7765432211111 011135689999
Q ss_pred HHHHHHhcCCChhhHHHhhcCeEEecCCCCCCChHHHHHHHHHhhCCCCCCcceEEEcC--CCCCCccceEeceeeeccc
Q 007563 479 AVTSSILSTGRIDLQRKLFCSIQLIGGVALTGGLIPAVEERVLHAIPSNEAIDMVEVLQ--SRTNPTYVSWKGGAVLGIL 556 (598)
Q Consensus 479 aI~~sI~~~~~~d~r~~L~~nIvLvGG~S~ipG~~~rL~~eL~~~~p~~~~i~~V~v~~--~~~dp~~~aWkGgSIla~L 556 (598)
++.+||..| |+|+|..||+||||+||+|+|+||.+||+.||..+.|.. ++++++ ..+++++.+|+||||||+|
T Consensus 325 lv~sSi~~c-DvdiR~~L~~nVivtGGtSliqG~s~RL~~ELs~~~P~s----rlki~as~~t~eR~~~~WlGGSILASL 399 (426)
T KOG0679|consen 325 LVYSSINMC-DVDIRSSLLGNVIVTGGTSLIQGFSERLNKELSKRAPSS----RLKIIASGHTVERRFQSWLGGSILASL 399 (426)
T ss_pred HHHhhhccC-hHHHHHHhhccEEEecCcchhhhHHHHHHHHHHHhCCcc----eEEEEecCceeeehhhhhhhhHHHhcc
Confidence 999999999 999999999999999999999999999999999999986 446665 3579999999999999999
Q ss_pred cCccceeeeHHHHHhcCc-ceeeecc
Q 007563 557 DFGRDAWIHREDWIRNGI-HIGSGRK 581 (598)
Q Consensus 557 ~s~~~~wItk~eyee~G~-~i~~~K~ 581 (598)
++|+++||||+||||.|. +.+.+||
T Consensus 400 gtFqq~WiSKqEYEE~G~d~~ve~rc 425 (426)
T KOG0679|consen 400 GTFQQLWISKQEYEEVGKDQLVERRC 425 (426)
T ss_pred ccHHHHhhhHHHHHHhhhHHHHhhcC
Confidence 999999999999999999 7776666
No 7
>KOG0676 consensus Actin and related proteins [Cytoskeleton]
Probab=100.00 E-value=7.3e-64 Score=521.83 Aligned_cols=318 Identities=24% Similarity=0.434 Sum_probs=271.6
Q ss_pred CceEEccccccCCCCCCceEecceecCeeeecCCCCccccHHHHHHHHHHHhhhhcCCCCCCCCccceEEecCCCCCcHH
Q 007563 172 REFICGEEALRVSPTEPYCIHRPIRRGHLNISQHYPMQQVLEDLYAIWDWILTEKLHIPRSERNLYSAILVLPESFDNRE 251 (598)
Q Consensus 172 ~~~~vGeeAl~~~~~~~~~l~~Pi~~G~~n~~~~~s~~~~~~dle~i~~~~l~~~L~i~~~~~~~y~~VLvip~~~~~~~ 251 (598)
++.+||++|.... +|+|||+||.++ +|++++.||.|+|++.|++.|.++ |||+++++++++.
T Consensus 52 ~~~~vg~~a~~~~-----~l~~Pie~Giv~---------~wd~me~iw~~if~~~L~~~Pee~----pvllte~pl~p~~ 113 (372)
T KOG0676|consen 52 KDTYVGDEAESKR-----TLKYPIERGIVT---------DWDDMEKIWHHLFYSELLVAPEEH----PVLLTEPPLNPKA 113 (372)
T ss_pred cccccchhhhccc-----cccCcccccccc---------chHHHHHHHHHHHHHhhccCcccC----ceEeecCCCCchH
Confidence 3567899998752 889999999999 999999999999999999999998 7999999999999
Q ss_pred HHH-HHHHHHHhcCCCeEeeehhhHHHHhhcCCceEEEEEeCCCcEEEEEeeCCeeeccCcEEeccccccChHHHHHHHH
Q 007563 252 IKE-MLSIVLRDLRFASAVVHQEGLAAVFGNGLSTACVVNMGAQVTSVICVEDGVALPNTEKTLPFGGEVQILDISRCLL 330 (598)
Q Consensus 252 vr~-l~ellfe~~~f~~v~~~qesv~a~fgaG~~sa~VVDiGa~~TsV~pV~dG~~l~~s~~~l~~GG~~~~~dit~~l~ 330 (598)
.|| |++++||.|++|++++..++++ |++|++||||||+|++.|+++||+||+++++++.++++||. |+|++|.
T Consensus 114 nREk~tqi~FE~fnvpa~yva~qavl--ya~g~ttG~VvD~G~gvt~~vPI~eG~~lp~ai~~ldl~G~----dlt~~l~ 187 (372)
T KOG0676|consen 114 NREKLTQIMFETFNVPALYVAIQAVL--YASGRTTGLVVDSGDGVTHVVPIYEGYALPHAILRLDLAGR----DLTDYLL 187 (372)
T ss_pred hHHHHHHHhhhhcCccHhHHHHHHHH--HHcCCeeEEEEEcCCCceeeeecccccccchhhheecccch----hhHHHHH
Confidence 987 9999999999999999776666 99999999999999999999999999999999999999999 9999999
Q ss_pred HHHHhcCCCCCcccccccchhhHHHHHHHHHHceeccCCccccccccccccCCCCCCCcceeeeeccCCCCCCCCCcccC
Q 007563 331 WTQRHHQTWPQIRTDILTKAMDLLMLNRIKESYCEIKEGEIDAVAVVHSYEDGMPPGSHKTRLIALNVPPMGLFYPKLLV 410 (598)
Q Consensus 331 ~lL~~~~~~p~~~~~~l~~~~d~~l~e~lKe~~c~v~~~~~~~~~~~~~~~~~~p~~~~k~~~~~~~~aP~~lF~P~~~~ 410 (598)
..|.+.+ +++....++++++++||++||++.+ . +.+... ..+. . .+
T Consensus 188 ~~L~~~g-------~s~~~~~~~eIv~diKeklCyvald-~---------~~e~~~-~~~~--~-------------~l- 233 (372)
T KOG0676|consen 188 KQLRKRG-------YSFTTSAEFEIVRDIKEKLCYVALD-F---------EEEEET-ANTS--S-------------SL- 233 (372)
T ss_pred HHHHhcc-------cccccccHHHHHHHhHhhhcccccc-c---------chhhhc-cccc--c-------------cc-
Confidence 8887754 2456667889999999999999863 2 111110 0000 0 00
Q ss_pred CCCCCCCCCCCCCCcccccCCCccccCC-CCCCCCCCCC-CCCCCCCCCCCCCCccCCCCCcccCCCHHHHHHHHHhcCC
Q 007563 411 PDVYPPPPRSWFNDYEDMLEDTWHTDFP-RRSDISDNFY-PGINVGLPMWESYPVLTTKPKKEEKIGLAEAVTSSILSTG 488 (598)
Q Consensus 411 ~~~~~~p~~~~~~d~~d~~~d~~~~~~~-er~~~~E~lf-p~~~~~~~~~~~~~~~~~~~~~~~~~~L~~aI~~sI~~~~ 488 (598)
-.+|+ ++|+..+..+ +|+.++|.+| |+..| .+..+|++++.+||.+|
T Consensus 234 -----------~~~y~--lPDg~~i~i~~erf~~pE~lFqP~~~g-----------------~e~~gi~~~~~~sI~kc- 282 (372)
T KOG0676|consen 234 -----------ESSYE--LPDGQKITIGNERFRCPEVLFQPSLLG-----------------MESPGIHELTVNSIMKC- 282 (372)
T ss_pred -----------ccccc--CCCCCEEecCCcccccchhcCChhhcC-----------------CCCCchhHHHHHHHHhC-
Confidence 01122 4455555555 8999999999 66655 56789999999999999
Q ss_pred ChhhHHHhhcCeEEecCCCCCCChHHHHHHHHHhhCCCCCCcceEEEcCCCCCCccceEeceeeeccccCccceeeeHHH
Q 007563 489 RIDLQRKLFCSIQLIGGVALTGGLIPAVEERVLHAIPSNEAIDMVEVLQSRTNPTYVSWKGGAVLGILDFGRDAWIHRED 568 (598)
Q Consensus 489 ~~d~r~~L~~nIvLvGG~S~ipG~~~rL~~eL~~~~p~~~~i~~V~v~~~~~dp~~~aWkGgSIla~L~s~~~~wItk~e 568 (598)
+.|+|++||+||+|+||++++|||.+||++||+.+.|... +++|+++ .++.+++|.||||+|+|++|+++||||+|
T Consensus 283 d~dlrk~L~~nivLsGGtT~~pGl~~Rl~kEl~~l~P~~~---~ikv~~p-p~r~~s~WlGgSIlaslstfq~~witk~e 358 (372)
T KOG0676|consen 283 DIDLRKDLYENIVLSGGTTMFPGLADRLQKELQALAPSTI---KIKVIAP-PERKYSAWLGGSILASLSTFQQMWITKEE 358 (372)
T ss_pred ChhHhHHHHhheEEeCCcccchhHHHHHHHHHhhcCCCCc---ceEEecC-cccccceecCceeEeecchHhhccccHHH
Confidence 9999999999999999999999999999999999998765 4577654 47779999999999999999999999999
Q ss_pred HHhcCcceeeeccc
Q 007563 569 WIRNGIHIGSGRKY 582 (598)
Q Consensus 569 yee~G~~i~~~K~~ 582 (598)
|+|.|++++++|||
T Consensus 359 Y~e~g~~~~~rk~f 372 (372)
T KOG0676|consen 359 YEEHGPSIIHRKCF 372 (372)
T ss_pred HhhhCCceeeeccC
Confidence 99999999999997
No 8
>PTZ00280 Actin-related protein 3; Provisional
Probab=100.00 E-value=4.1e-61 Score=521.75 Aligned_cols=329 Identities=23% Similarity=0.338 Sum_probs=266.5
Q ss_pred ceEEccccccCCCCCCceEecceecCeeeecCCCCccccHHHHHHHHHHHhhhhcCCCCCCCCccceEEecCCCCCcHHH
Q 007563 173 EFICGEEALRVSPTEPYCIHRPIRRGHLNISQHYPMQQVLEDLYAIWDWILTEKLHIPRSERNLYSAILVLPESFDNREI 252 (598)
Q Consensus 173 ~~~vGeeAl~~~~~~~~~l~~Pi~~G~~n~~~~~s~~~~~~dle~i~~~~l~~~L~i~~~~~~~y~~VLvip~~~~~~~v 252 (598)
++++|++|+... ..+.+++||++|.+. ||++++.||+|+|.+.|+++|.++ ++|++++++++...
T Consensus 53 ~~~vG~ea~~~~--~~~~l~~Pi~~G~I~---------dwd~~e~l~~~~~~~~L~~~p~~~----~vllte~~~~~~~~ 117 (414)
T PTZ00280 53 DFYIGDEALAAS--KSYTLTYPMKHGIVE---------DWDLMEKFWEQCIFKYLRCEPEEH----YFILTEPPMNPPEN 117 (414)
T ss_pred CEEEcchhhhCc--CCcEEecCccCCEeC---------CHHHHHHHHHHHHHHhhccCCCCC----ceEEeeCCCCcHHH
Confidence 578999998864 569999999999998 999999999999989999999888 69999999988887
Q ss_pred HH-HHHHHHHhcCCCeEeeehhhHHHHhhc----------CCceEEEEEeCCCcEEEEEeeCCeeeccCcEEeccccccC
Q 007563 253 KE-MLSIVLRDLRFASAVVHQEGLAAVFGN----------GLSTACVVNMGAQVTSVICVEDGVALPNTEKTLPFGGEVQ 321 (598)
Q Consensus 253 r~-l~ellfe~~~f~~v~~~qesv~a~fga----------G~~sa~VVDiGa~~TsV~pV~dG~~l~~s~~~l~~GG~~~ 321 (598)
|+ ++++|||.|++++++++.+++||+||+ |.++|||||+|++.|+|+||+||+++.++..++++||+
T Consensus 118 Re~l~e~lFE~~~~p~i~~~~~~~lslya~~~~~~~~~~~g~~tglVVDiG~~~T~i~PV~~G~~l~~~~~~~~~GG~-- 195 (414)
T PTZ00280 118 REYTAEIMFETFNVKGLYIAVQAVLALRASWTSKKAKELGGTLTGTVIDSGDGVTHVIPVVDGYVIGSSIKHIPLAGR-- 195 (414)
T ss_pred HHHHHHHHhhccCCCeEEEecCHHHhHhhhcccccccccCCceeEEEEECCCCceEEEEEECCEEcccceEEecCcHH--
Confidence 76 999999999999999999999999999 99999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHhcCCCCCcccccccchhhHHHHHHHHHHceeccCCccccccccccccCCCCC-CCcceeeeeccCCC
Q 007563 322 ILDISRCLLWTQRHHQTWPQIRTDILTKAMDLLMLNRIKESYCEIKEGEIDAVAVVHSYEDGMPP-GSHKTRLIALNVPP 400 (598)
Q Consensus 322 ~~dit~~l~~lL~~~~~~p~~~~~~l~~~~d~~l~e~lKe~~c~v~~~~~~~~~~~~~~~~~~p~-~~~k~~~~~~~~aP 400 (598)
+||++|.++|+.++. ++....+..+++++||++|++..+-.+ ....+.. .+. ...++.+ |
T Consensus 196 --~lt~~L~~lL~~~~~-------~~~~~~~~~~~~~iKe~~c~v~~d~~~---e~~~~~~-~~~~~~~~~~~------~ 256 (414)
T PTZ00280 196 --DITNFIQQMLRERGE-------PIPAEDILLLAQRIKEKYCYVAPDIAK---EFEKYDS-DPKNHFKKYTA------V 256 (414)
T ss_pred --HHHHHHHHHHHHcCC-------CCCcHHHHHHHHHHHHhcCcccCcHHH---HHHHhhc-CcccccceEEC------C
Confidence 999999999976642 233345678999999999999864111 1111110 000 0000110 0
Q ss_pred CCCCCCcccCCCCCCCCCCCCCCCcccccCCCccccCC-CCCCCCCCCC-CCCCCCCCCCCCCCccCCCCCcccCCCHHH
Q 007563 401 MGLFYPKLLVPDVYPPPPRSWFNDYEDMLEDTWHTDFP-RRSDISDNFY-PGINVGLPMWESYPVLTTKPKKEEKIGLAE 478 (598)
Q Consensus 401 ~~lF~P~~~~~~~~~~p~~~~~~d~~d~~~d~~~~~~~-er~~~~E~lf-p~~~~~~~~~~~~~~~~~~~~~~~~~~L~~ 478 (598)
.. . ...+..+.++ +|+.++|.|| |+..+. ....||++
T Consensus 257 d~-----------------------~--~g~~~~i~l~~erf~~~E~LF~P~~~~~----------------~~~~gl~e 295 (414)
T PTZ00280 257 NS-----------------------V--TKKPYTVDVGYERFLGPEMFFHPEIFSS----------------EWTTPLPE 295 (414)
T ss_pred CC-----------------------C--CCCccEEEechHHhcCcccccChhhcCC----------------ccCCCHHH
Confidence 00 0 0011133344 7999999999 655431 12459999
Q ss_pred HHHHHHhcCCChhhHHHhhcCeEEecCCCCCCChHHHHHHHHHhhCCCC--------------CCcceEEEcCCCCCCcc
Q 007563 479 AVTSSILSTGRIDLQRKLFCSIQLIGGVALTGGLIPAVEERVLHAIPSN--------------EAIDMVEVLQSRTNPTY 544 (598)
Q Consensus 479 aI~~sI~~~~~~d~r~~L~~nIvLvGG~S~ipG~~~rL~~eL~~~~p~~--------------~~i~~V~v~~~~~dp~~ 544 (598)
+|.+||.+| +.|+|++||+||+|+||+|+||||.+||++||+.++|.. ..+ +|+|... .++.+
T Consensus 296 ~i~~sI~~~-~~d~r~~L~~nIvL~GG~s~~~Gf~eRL~~El~~~~~~~~~~~~~~~~~~~~~~~~-~v~v~~~-~~~~~ 372 (414)
T PTZ00280 296 VVDDAIQSC-PIDCRRPLYKNIVLSGGSTMFKGFDKRLQRDVRKRVDRRLKKAEELSGGKLKPIPI-DVNVVSH-PRQRY 372 (414)
T ss_pred HHHHHHHhC-ChhhHHHHhhcEEEeCCcccCcCHHHHHHHHHHHhccccccccccccccccCCCCc-eEEEecC-Cccce
Confidence 999999999 899999999999999999999999999999999987431 112 5677653 37889
Q ss_pred ceEeceeeeccccCccceeeeHHHHHhcCcceeeecc
Q 007563 545 VSWKGGAVLGILDFGRDAWIHREDWIRNGIHIGSGRK 581 (598)
Q Consensus 545 ~aWkGgSIla~L~s~~~~wItk~eyee~G~~i~~~K~ 581 (598)
++|+||||||++++|+++||||+||+|+|.++++++-
T Consensus 373 ~~W~GgSilas~~~f~~~~itk~eY~E~G~~i~~~~~ 409 (414)
T PTZ00280 373 AVWYGGSMLASSPEFEKVCHTKAEYDEYGPSICRYNN 409 (414)
T ss_pred eEEEChhhcccCcchhhheEEHHHHhccChHheeecc
Confidence 9999999999999999999999999999999998874
No 9
>PF00022 Actin: Actin; InterPro: IPR004000 Actin [, ] is a ubiquitous protein involved in the formation of filaments that are major components of the cytoskeleton. These filaments interact with myosin to produce a sliding effect, which is the basis of muscular contraction and many aspects of cell motility, including cytokinesis. Each actin protomer binds one molecule of ATP and has one high affinity site for either calcium or magnesium ions, as well as several low affinity sites. Actin exists as a monomer in low salt concentrations, but filaments form rapidly as salt concentration rises, with the consequent hydrolysis of ATP. Actin from many sources forms a tight complex with deoxyribonuclease (DNase I) although the significance of this is still unknown. The formation of this complex results in the inhibition of DNase I activity, and actin loses its ability to polymerise. It has been shown that an ATPase domain of actin shares similarity with ATPase domains of hexokinase and hsp70 proteins [, ]. In vertebrates there are three groups of actin isoforms: alpha, beta and gamma. The alpha actins are found in muscle tissues and are a major constituent of the contractile apparatus. The beta and gamma actins co-exists in most cell types as components of the cytoskeleton and as mediators of internal cell motility. In plants there are many isoforms which are probably involved in a variety of functions such as cytoplasmic streaming, cell shape determination, tip growth, graviperception, cell wall deposition, etc. Recently some divergent actin-like proteins have been identified in several species. These proteins include centractin (actin-RPV) from mammals, fungi yeast ACT5, Neurospora crassa ro-4) and Pneumocystis carinii, which seems to be a component of a multi-subunit centrosomal complex involved in microtubule based vesicle motility (this subfamily is known as ARP1); ARP2 subfamily, which includes chicken ACTL, Saccharomyces cerevisiae ACT2, Drosophila melanogaster 14D and Caenorhabditis elegans actC; ARP3 subfamily, which includes actin 2 from mammals, Drosophila 66B, yeast ACT4 and Schizosaccharomyces pombe act2; and ARP4 subfamily, which includes yeast ACT3 and Drosophila 13E.; PDB: 2OAN_B 1HLU_A 2BTF_A 3UB5_A 3U4L_A 4EFH_A 1YVN_A 1YAG_A 1D4X_A 1MDU_B ....
Probab=100.00 E-value=6.3e-62 Score=524.73 Aligned_cols=336 Identities=26% Similarity=0.440 Sum_probs=258.5
Q ss_pred ceEEccccccCCCCCCceEecceecCeeeecCCCCccccHHHHHHHHHHHhhhhcCCCCCCCCccceEEecCCCCCcHHH
Q 007563 173 EFICGEEALRVSPTEPYCIHRPIRRGHLNISQHYPMQQVLEDLYAIWDWILTEKLHIPRSERNLYSAILVLPESFDNREI 252 (598)
Q Consensus 173 ~~~vGeeAl~~~~~~~~~l~~Pi~~G~~n~~~~~s~~~~~~dle~i~~~~l~~~L~i~~~~~~~y~~VLvip~~~~~~~v 252 (598)
++++|++++. +...+.+++|+++|.++ +|++++.+|+|+|.+.|+++++++ +||++++++.++..
T Consensus 45 ~~~~g~~~~~--~~~~~~~~~p~~~g~i~---------~~~~~e~i~~~~~~~~l~~~~~~~----~vll~~~~~~~~~~ 109 (393)
T PF00022_consen 45 DYYVGDEALS--PRSNLELRSPIENGVIV---------DWDALEEIWDYIFSNLLKVDPSDH----PVLLTEPPFNPRSQ 109 (393)
T ss_dssp SCEETHHHHH--TGTGEEEEESEETTEES---------SHHHHHHHHHHHHHTTT-SSGGGS----EEEEEESTT--HHH
T ss_pred eEEeeccccc--chhheeeeeeccccccc---------cccccccccccccccccccccccc----eeeeeccccCCchh
Confidence 4678888665 24689999999999998 999999999999998899998887 68888888877776
Q ss_pred HH-HHHHHHHhcCCCeEeeehhhHHHHhhcCCceEEEEEeCCCcEEEEEeeCCeeeccCcEEeccccccChHHHHHHHHH
Q 007563 253 KE-MLSIVLRDLRFASAVVHQEGLAAVFGNGLSTACVVNMGAQVTSVICVEDGVALPNTEKTLPFGGEVQILDISRCLLW 331 (598)
Q Consensus 253 r~-l~ellfe~~~f~~v~~~qesv~a~fgaG~~sa~VVDiGa~~TsV~pV~dG~~l~~s~~~l~~GG~~~~~dit~~l~~ 331 (598)
++ ++++|||.|+|++++++++++||+|++|.+||||||+|++.|+|+||+||+++.++++++++||+ ++|++|.+
T Consensus 110 r~~l~e~lfE~~~~~~v~~~~~~~~a~~~~g~~tglVVD~G~~~t~v~pV~dG~~~~~~~~~~~~GG~----~lt~~l~~ 185 (393)
T PF00022_consen 110 REKLAEILFEKFGVPSVYFIPSPLLALYASGRTTGLVVDIGYSSTSVVPVVDGYVLPHSIKRSPIGGD----DLTEYLKE 185 (393)
T ss_dssp HHHHHHHHHHTS--SEEEEEEHHHHHHHHTTBSSEEEEEESSS-EEEEEEETTEE-GGGBEEES-SHH----HHHHHHHH
T ss_pred hhhhhhhhhcccccceeeeeecccccccccccccccccccceeeeeeeeeeeccccccccccccccHH----HHHHHHHH
Confidence 65 99999999999999999999999999999999999999999999999999999999999999999 99999999
Q ss_pred HHHhcCC--CCCcc--------cccccchhhHHHHHHHHHHceeccCCccccccccccccCCCCCCCcceeeeeccCCCC
Q 007563 332 TQRHHQT--WPQIR--------TDILTKAMDLLMLNRIKESYCEIKEGEIDAVAVVHSYEDGMPPGSHKTRLIALNVPPM 401 (598)
Q Consensus 332 lL~~~~~--~p~~~--------~~~l~~~~d~~l~e~lKe~~c~v~~~~~~~~~~~~~~~~~~p~~~~k~~~~~~~~aP~ 401 (598)
+|+.++. .|.+. ...+....+..+++++|+++|+++.+..... .......+ ...+
T Consensus 186 lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~~v~~~~~~~~---~~~~~~~~--~~~~---------- 250 (393)
T PF00022_consen 186 LLKERNIQINPSYLIKSKSPVEGESYNNSDDEEIVEEIKEECCYVSEDPDEEQ---EEQASENP--EKSY---------- 250 (393)
T ss_dssp HHHHT-SS--GCCCCCCHCCC-TCHHSSHHHHHHHHHHHHHHHSGGSSHHHHH---HHHHCSTT--TEEE----------
T ss_pred HHHhhccccccccccccccccccccccchhhhccchhccchhhhccccccccc---cccccccc--ceec----------
Confidence 9987521 11111 1123344578899999999999997533100 00000000 0001
Q ss_pred CCCCCcccCCCCCCCCCCCCCCCcccccCCCccccCC-CCCCCCCCCC-CCCCCCCCCCCCCCccCCCCCcccCCCHHHH
Q 007563 402 GLFYPKLLVPDVYPPPPRSWFNDYEDMLEDTWHTDFP-RRSDISDNFY-PGINVGLPMWESYPVLTTKPKKEEKIGLAEA 479 (598)
Q Consensus 402 ~lF~P~~~~~~~~~~p~~~~~~d~~d~~~d~~~~~~~-er~~~~E~lf-p~~~~~~~~~~~~~~~~~~~~~~~~~~L~~a 479 (598)
.+||+..+.++ +|+.++|.|| |...+.... .......||+++
T Consensus 251 --------------------------~lPdg~~i~~~~er~~~~E~LF~p~~~~~~~~----------~~~~~~~gL~~~ 294 (393)
T PF00022_consen 251 --------------------------ELPDGQTIILGKERFRIPEILFNPSLIGIDSA----------SEPSEFMGLPEL 294 (393)
T ss_dssp --------------------------E-TTSSEEEESTHHHHHHHTTTSGGGGTSSST----------S---SSSCHHHH
T ss_pred --------------------------cccccccccccccccccccccccccccccccc----------ccccccchhhhh
Confidence 12233333333 6888889999 554331000 000234699999
Q ss_pred HHHHHhcCCChhhHHHhhcCeEEecCCCCCCChHHHHHHHHHhhCCCCCCcceEEEcCCCCCCccceEeceeeeccccCc
Q 007563 480 VTSSILSTGRIDLQRKLFCSIQLIGGVALTGGLIPAVEERVLHAIPSNEAIDMVEVLQSRTNPTYVSWKGGAVLGILDFG 559 (598)
Q Consensus 480 I~~sI~~~~~~d~r~~L~~nIvLvGG~S~ipG~~~rL~~eL~~~~p~~~~i~~V~v~~~~~dp~~~aWkGgSIla~L~s~ 559 (598)
|.+||.+| +.|.|++|++||+|+||+|++|||.+||++||..+.|... +++|+..+.+|.+++|+||||+|+|++|
T Consensus 295 I~~si~~~-~~d~r~~l~~nIvl~GG~S~i~G~~eRL~~eL~~~~~~~~---~~~v~~~~~~~~~~aW~Ggsilasl~~f 370 (393)
T PF00022_consen 295 ILDSISKC-PIDLRKELLSNIVLTGGSSLIPGFKERLQQELRSLLPSST---KVKVIAPPSDRQFAAWIGGSILASLSSF 370 (393)
T ss_dssp HHHHHHTS-TTTTHHHHHTTEEEESGGGGSTTHHHHHHHHHHHHSGTTS---TEEEE--T-TTTSHHHHHHHHHHTSGGG
T ss_pred hhhhhhcc-ccccccccccceEEecccccccchHHHHHHHhhhhhhccc---cceeccCchhhhhcccccceeeeccccc
Confidence 99999999 8999999999999999999999999999999999887765 4566654338999999999999999999
Q ss_pred cceeeeHHHHHhcCcceeeeccc
Q 007563 560 RDAWIHREDWIRNGIHIGSGRKY 582 (598)
Q Consensus 560 ~~~wItk~eyee~G~~i~~~K~~ 582 (598)
+++||||+||+|+|+++++|||+
T Consensus 371 ~~~~itr~eYeE~G~~~i~rkc~ 393 (393)
T PF00022_consen 371 QSFWITREEYEEYGPSIIHRKCF 393 (393)
T ss_dssp GGTSEEHHHHHHHGGGGHHHHT-
T ss_pred cceeeeHHHHhCcCcceeeecCC
Confidence 99999999999999999999995
No 10
>smart00268 ACTIN Actin. ACTIN subfamily of ACTIN/mreB/sugarkinase/Hsp70 superfamily
Probab=100.00 E-value=2.3e-58 Score=494.06 Aligned_cols=325 Identities=23% Similarity=0.415 Sum_probs=266.2
Q ss_pred ceEEccccccCCCCCCceEecceecCeeeecCCCCccccHHHHHHHHHHHhhhhcCCCCCCCCccceEEecCCCCCcHHH
Q 007563 173 EFICGEEALRVSPTEPYCIHRPIRRGHLNISQHYPMQQVLEDLYAIWDWILTEKLHIPRSERNLYSAILVLPESFDNREI 252 (598)
Q Consensus 173 ~~~vGeeAl~~~~~~~~~l~~Pi~~G~~n~~~~~s~~~~~~dle~i~~~~l~~~L~i~~~~~~~y~~VLvip~~~~~~~v 252 (598)
.+++|++|.... ..+.+++|+++|.+. ||++++.||+|+|.+.|+++++++ +|+++++.+.+...
T Consensus 46 ~~~~G~~a~~~~--~~~~~~~P~~~G~i~---------d~~~~e~i~~~~~~~~l~~~~~~~----~vll~~p~~~~~~~ 110 (373)
T smart00268 46 DTFVGDEAQEKR--GGLELKYPIEHGIVE---------NWDDMEKIWDYTFFNELRVEPEEH----PVLLTEPPMNPKSN 110 (373)
T ss_pred ceEecchhhhcC--CCceecCCCcCCEEe---------CHHHHHHHHHHHHhhhcCCCCccC----eeEEecCCCCCHHH
Confidence 578999986543 456999999999998 999999999999988899988777 68888888876665
Q ss_pred H-HHHHHHHHhcCCCeEeeehhhHHHHhhcCCceEEEEEeCCCcEEEEEeeCCeeeccCcEEeccccccChHHHHHHHHH
Q 007563 253 K-EMLSIVLRDLRFASAVVHQEGLAAVFGNGLSTACVVNMGAQVTSVICVEDGVALPNTEKTLPFGGEVQILDISRCLLW 331 (598)
Q Consensus 253 r-~l~ellfe~~~f~~v~~~qesv~a~fgaG~~sa~VVDiGa~~TsV~pV~dG~~l~~s~~~l~~GG~~~~~dit~~l~~ 331 (598)
| .+++++||.|+|++++++.+++||+||+|.++|||||||++.|+|+||+||+++.++..++++||+ ++|++|.+
T Consensus 111 r~~~~e~lfE~~~~~~v~~~~~~~~a~~~~g~~~~lVVDiG~~~t~v~pv~~G~~~~~~~~~~~~GG~----~l~~~l~~ 186 (373)
T smart00268 111 REKILEIMFETFNFPALYIAIQAVLSLYASGRTTGLVIDSGDGVTHVVPVVDGYVLPHAIKRIDIAGR----DLTDYLKE 186 (373)
T ss_pred HHHHHHHhhccCCCCeEEEeccHHHHHHhCCCCEEEEEecCCCcceEEEEECCEEchhhheeccCcHH----HHHHHHHH
Confidence 6 499999999999999999999999999999999999999999999999999999999999999999 99999999
Q ss_pred HHHhcCCCCCcccccccchhhHHHHHHHHHHceeccCCccccccccccccCCCCCCCcceeeeeccCCCCCCCCCcccCC
Q 007563 332 TQRHHQTWPQIRTDILTKAMDLLMLNRIKESYCEIKEGEIDAVAVVHSYEDGMPPGSHKTRLIALNVPPMGLFYPKLLVP 411 (598)
Q Consensus 332 lL~~~~~~p~~~~~~l~~~~d~~l~e~lKe~~c~v~~~~~~~~~~~~~~~~~~p~~~~k~~~~~~~~aP~~lF~P~~~~~ 411 (598)
+|+..+. .++...+..+++++|+++|+++.+.-.. ........ .+... +
T Consensus 187 ~l~~~~~-------~~~~~~~~~~~~~iKe~~~~v~~~~~~~---~~~~~~~~--------------~~~~~--~----- 235 (373)
T smart00268 187 LLSERGY-------QFNSSAEFEIVREIKEKLCYVAEDFEKE---MKKARESS--------------ESSKL--E----- 235 (373)
T ss_pred HHHhcCC-------CCCcHHHHHHHHHhhhheeeecCChHHH---HHHhhhcc--------------ccccc--c-----
Confidence 9876431 1233457789999999999998631100 00000000 00000 0
Q ss_pred CCCCCCCCCCCCCcccccCCCccccCC-CCCCCCCCCC-CCCCCCCCCCCCCCccCCCCCcccCCCHHHHHHHHHhcCCC
Q 007563 412 DVYPPPPRSWFNDYEDMLEDTWHTDFP-RRSDISDNFY-PGINVGLPMWESYPVLTTKPKKEEKIGLAEAVTSSILSTGR 489 (598)
Q Consensus 412 ~~~~~p~~~~~~d~~d~~~d~~~~~~~-er~~~~E~lf-p~~~~~~~~~~~~~~~~~~~~~~~~~~L~~aI~~sI~~~~~ 489 (598)
. .| .++|+..+..+ +|+.++|.|| |+..+ .+..+|+++|.++|.+| |
T Consensus 236 ~-----------~~--~lpdg~~~~~~~er~~~~E~lf~p~~~~-----------------~~~~~i~~~i~~~i~~~-~ 284 (373)
T smart00268 236 K-----------TY--ELPDGNTIKVGNERFRIPEILFKPELIG-----------------LEQKGIHELVYESIQKC-D 284 (373)
T ss_pred e-----------eE--ECCCCCEEEEChHHeeCchhcCCchhcC-----------------CCcCCHHHHHHHHHHhC-C
Confidence 0 00 23344444444 7899999999 55433 34569999999999999 8
Q ss_pred hhhHHHhhcCeEEecCCCCCCChHHHHHHHHHhhCCCCCCcceEEEcCCCCCCccceEeceeeeccccCccceeeeHHHH
Q 007563 490 IDLQRKLFCSIQLIGGVALTGGLIPAVEERVLHAIPSNEAIDMVEVLQSRTNPTYVSWKGGAVLGILDFGRDAWIHREDW 569 (598)
Q Consensus 490 ~d~r~~L~~nIvLvGG~S~ipG~~~rL~~eL~~~~p~~~~i~~V~v~~~~~dp~~~aWkGgSIla~L~s~~~~wItk~ey 569 (598)
.|+|++|++||+|+||+|++|||.+||++||..+.|... +|++.. ..++++++|+|||++|++++|+++||||+||
T Consensus 285 ~d~r~~l~~nIvltGG~s~i~Gl~~RL~~el~~~~p~~~---~v~v~~-~~~~~~~~W~G~silas~~~f~~~~vtk~eY 360 (373)
T smart00268 285 IDVRKDLYENIVLSGGSTLIPGFGERLEKELKQLAPKKL---KVKVIA-PPERKYSVWLGGSILASLSTFEDMWITKKEY 360 (373)
T ss_pred HhHHHHHHhCeEeecccccCcCHHHHHHHHHHHhCCCCc---eeEEec-CCCCccceEeCcccccCccchhhhEEEHHHH
Confidence 999999999999999999999999999999999998654 456654 3578999999999999999999999999999
Q ss_pred HhcCcceeeeccc
Q 007563 570 IRNGIHIGSGRKY 582 (598)
Q Consensus 570 ee~G~~i~~~K~~ 582 (598)
+|+|.+++++|||
T Consensus 361 ~E~G~~i~~~k~~ 373 (373)
T smart00268 361 EEHGSQIVERKCF 373 (373)
T ss_pred hhhCcceEEeecC
Confidence 9999999999996
No 11
>cd00012 ACTIN Actin; An ubiquitous protein involved in the formation of filaments that are a major component of the cytoskeleton. Interaction with myosin provides the basis of muscular contraction and many aspects of cell motility. Each actin protomer binds one molecule of ATP and either calcium or magnesium ions. Actin exists as a monomer in low salt concentrations, but filaments form rapidly as salt concentration rises, with the consequent hydrolysis of ATP. Polymerization is regulated by so-called capping proteins. The ATPase domain of actin shares similarity with ATPase domains of hexokinase and hsp70 proteins.
Probab=100.00 E-value=1.8e-57 Score=486.74 Aligned_cols=325 Identities=24% Similarity=0.400 Sum_probs=266.2
Q ss_pred CceEEccccccCCCCCCceEecceecCeeeecCCCCccccHHHHHHHHHHHhhhhcCCCCCCCCccceEEecCCCCCcHH
Q 007563 172 REFICGEEALRVSPTEPYCIHRPIRRGHLNISQHYPMQQVLEDLYAIWDWILTEKLHIPRSERNLYSAILVLPESFDNRE 251 (598)
Q Consensus 172 ~~~~vGeeAl~~~~~~~~~l~~Pi~~G~~n~~~~~s~~~~~~dle~i~~~~l~~~L~i~~~~~~~y~~VLvip~~~~~~~ 251 (598)
..+++|++|...... ++.+++|+++|.+. +|++++.+|+|+|.+.|.+++++. +|+++++.+.++.
T Consensus 44 ~~~~~G~~a~~~~~~-~~~~~~P~~~G~i~---------d~~~~e~~~~~~~~~~l~~~~~~~----~vvl~~p~~~~~~ 109 (371)
T cd00012 44 KDYFVGEEALEKRGL-GLELIYPIEHGIVV---------DWDDMEKIWDHLFFNELKVNPEEH----PVLLTEPPLNPKS 109 (371)
T ss_pred CceEEchhhhhCCCC-ceEEcccccCCEEe---------CHHHHHHHHHHHHHHhcCCCCCCC----ceEEecCCCCCHH
Confidence 457899999987643 79999999999998 999999999999988888887766 5777777776655
Q ss_pred HH-HHHHHHHHhcCCCeEeeehhhHHHHhhcCCceEEEEEeCCCcEEEEEeeCCeeeccCcEEeccccccChHHHHHHHH
Q 007563 252 IK-EMLSIVLRDLRFASAVVHQEGLAAVFGNGLSTACVVNMGAQVTSVICVEDGVALPNTEKTLPFGGEVQILDISRCLL 330 (598)
Q Consensus 252 vr-~l~ellfe~~~f~~v~~~qesv~a~fgaG~~sa~VVDiGa~~TsV~pV~dG~~l~~s~~~l~~GG~~~~~dit~~l~ 330 (598)
.+ .++++|||.++|++|+++.+++||+||+|.++|||||||++.|+|+||+||+++.++..++++||+ ++|++|.
T Consensus 110 ~r~~~~e~lfe~~~~~~v~~~~~~~~a~~~~g~~~~lVVDiG~~~t~i~pv~~G~~~~~~~~~~~~GG~----~l~~~l~ 185 (371)
T cd00012 110 NREKTTEIMFETFNVPALYVAIQAVLSLYASGRTTGLVVDSGDGVTHVVPVYDGYVLPHAIKRLDLAGR----DLTRYLK 185 (371)
T ss_pred HHHHHHHHhhccCCCCEEEEechHHHHHHhcCCCeEEEEECCCCeeEEEEEECCEEchhhheeccccHH----HHHHHHH
Confidence 55 599999999999999999999999999999999999999999999999999999999999999999 9999999
Q ss_pred HHHHhcCCCCCcccccccchhhHHHHHHHHHHceeccCCccccccccccccCCCCCCCcceeeeeccCCCCCCCCCcccC
Q 007563 331 WTQRHHQTWPQIRTDILTKAMDLLMLNRIKESYCEIKEGEIDAVAVVHSYEDGMPPGSHKTRLIALNVPPMGLFYPKLLV 410 (598)
Q Consensus 331 ~lL~~~~~~p~~~~~~l~~~~d~~l~e~lKe~~c~v~~~~~~~~~~~~~~~~~~p~~~~k~~~~~~~~aP~~lF~P~~~~ 410 (598)
++|+.++. .+....+..+++++|+++|+++.+...... .. .. ..... .
T Consensus 186 ~~l~~~~~-------~~~~~~~~~~~~~iKe~~~~v~~~~~~~~~-~~--~~-~~~~~-~-------------------- 233 (371)
T cd00012 186 ELLRERGY-------ELNSSDEREIVRDIKEKLCYVALDIEEEQD-KS--AK-ETSLL-E-------------------- 233 (371)
T ss_pred HHHHhcCC-------CccchhHHHHHHHHHHhheeecCCHHHHHH-hh--hc-cCCcc-c--------------------
Confidence 99976541 234456788999999999999864211000 00 00 00000 0
Q ss_pred CCCCCCCCCCCCCCcccccCCCccccCC-CCCCCCCCCC-CCCCCCCCCCCCCCccCCCCCcccCCCHHHHHHHHHhcCC
Q 007563 411 PDVYPPPPRSWFNDYEDMLEDTWHTDFP-RRSDISDNFY-PGINVGLPMWESYPVLTTKPKKEEKIGLAEAVTSSILSTG 488 (598)
Q Consensus 411 ~~~~~~p~~~~~~d~~d~~~d~~~~~~~-er~~~~E~lf-p~~~~~~~~~~~~~~~~~~~~~~~~~~L~~aI~~sI~~~~ 488 (598)
.. -.+||+..+.++ +|+.++|.|| |...+ ....+|+++|.++|..|
T Consensus 234 ------------~~--~~lpd~~~i~~~~er~~~~E~lF~p~~~~-----------------~~~~~i~~~i~~~i~~~- 281 (371)
T cd00012 234 ------------KT--YELPDGRTIKVGNERFRAPEILFNPSLIG-----------------SEQVGISEAIYSSINKC- 281 (371)
T ss_pred ------------ee--EECCCCeEEEEChHHhhChHhcCChhhcC-----------------CCcCCHHHHHHHHHHhC-
Confidence 00 013344445444 7899999999 55433 34679999999999999
Q ss_pred ChhhHHHhhcCeEEecCCCCCCChHHHHHHHHHhhCCCCCCcceEEEcCCCCCCccceEeceeeeccccCccceeeeHHH
Q 007563 489 RIDLQRKLFCSIQLIGGVALTGGLIPAVEERVLHAIPSNEAIDMVEVLQSRTNPTYVSWKGGAVLGILDFGRDAWIHRED 568 (598)
Q Consensus 489 ~~d~r~~L~~nIvLvGG~S~ipG~~~rL~~eL~~~~p~~~~i~~V~v~~~~~dp~~~aWkGgSIla~L~s~~~~wItk~e 568 (598)
+.|.|+.+++||+|+||+|++|||.+||+++|..+.|.. +...+.+. ...+|.+++|+|||++|++++|+++||||+|
T Consensus 282 ~~~~~~~l~~~Ivl~GG~s~~~gl~~rl~~el~~~~~~~-~~~~~~~~-~~~~~~~~aw~G~si~as~~~~~~~~itk~e 359 (371)
T cd00012 282 DIDLRKDLYSNIVLSGGSTLFPGFGERLQKELLKLAPPS-KDTKVKVI-APPERKYSVWLGGSILASLSTFQQLWITKEE 359 (371)
T ss_pred CHhHHHHHHhCEEEeCCccCCcCHHHHHHHHHHHhCCcc-cceEEEEc-cCCCccccEEeCchhhcCchhhhheEeeHHH
Confidence 899999999999999999999999999999999998863 11234554 3468999999999999999999999999999
Q ss_pred HHhcCcceeeec
Q 007563 569 WIRNGIHIGSGR 580 (598)
Q Consensus 569 yee~G~~i~~~K 580 (598)
|+|+|.+++++|
T Consensus 360 Y~E~G~~~~~~k 371 (371)
T cd00012 360 YEEHGPSIVHRK 371 (371)
T ss_pred HhhhCchhEecC
Confidence 999999999876
No 12
>KOG0677 consensus Actin-related protein Arp2/3 complex, subunit Arp2 [Cytoskeleton]
Probab=100.00 E-value=5.8e-58 Score=442.56 Aligned_cols=323 Identities=23% Similarity=0.430 Sum_probs=271.9
Q ss_pred CceEEccccccCCCCCCceEecceecCeeeecCCCCccccHHHHHHHHHHHhhhhcCCCCCCCCccceEEecCCCCCcHH
Q 007563 172 REFICGEEALRVSPTEPYCIHRPIRRGHLNISQHYPMQQVLEDLYAIWDWILTEKLHIPRSERNLYSAILVLPESFDNRE 251 (598)
Q Consensus 172 ~~~~vGeeAl~~~~~~~~~l~~Pi~~G~~n~~~~~s~~~~~~dle~i~~~~l~~~L~i~~~~~~~y~~VLvip~~~~~~~ 251 (598)
++..|||||-.+ +.-+.+.|||.+|.+. +|+|++++|+|+|.++|.|+|++.+ +|+++|++++..
T Consensus 51 KD~mvGdeasel--Rs~L~i~YPmeNGivr---------nwddM~h~WDytF~ekl~idp~~~K----iLLTePPmNP~k 115 (389)
T KOG0677|consen 51 KDLMVGDEASEL--RSLLDINYPMENGIVR---------NWDDMEHVWDYTFGEKLKIDPTNCK----ILLTEPPMNPTK 115 (389)
T ss_pred hhheccchHHHH--HHHHhcCCcccccccc---------ChHHHHHHHHhhhhhhccCCCccCe----EEeeCCCCCccc
Confidence 578899998766 3568899999999998 9999999999999999999999984 999999999988
Q ss_pred HHH-HHHHHHHhcCCCeEeeehhhHHHHhhcCCceEEEEEeCCCcEEEEEeeCCeeeccCcEEeccccccChHHHHHHHH
Q 007563 252 IKE-MLSIVLRDLRFASAVVHQEGLAAVFGNGLSTACVVNMGAQVTSVICVEDGVALPNTEKTLPFGGEVQILDISRCLL 330 (598)
Q Consensus 252 vr~-l~ellfe~~~f~~v~~~qesv~a~fgaG~~sa~VVDiGa~~TsV~pV~dG~~l~~s~~~l~~GG~~~~~dit~~l~ 330 (598)
.|+ |++++||++||.++++.-++++++|+-|+.||+|||.|.+.|+||||+||+++++-..|++++|+ |+|++|.
T Consensus 116 NREKm~evMFEkY~F~gvyvaiQAVLtLYAQGL~tGvVvDSGDGVTHi~PVye~~~l~HLtrRldvAGR----diTryLi 191 (389)
T KOG0677|consen 116 NREKMIEVMFEKYGFGGVYVAIQAVLTLYAQGLLTGVVVDSGDGVTHIVPVYEGFVLPHLTRRLDVAGR----DITRYLI 191 (389)
T ss_pred cHHHHHHHHHHHcCCCeEEehHHHHHHHHHhcccceEEEecCCCeeEEeeeecceehhhhhhhccccch----hHHHHHH
Confidence 886 99999999999999999999999999999999999999999999999999999999999999999 9999999
Q ss_pred HHHHhcCCCCCcccccccchhhHHHHHHHHHHceeccCCccccccccccccCCCCCCCcceeeeeccCCCCCCCCCcccC
Q 007563 331 WTQRHHQTWPQIRTDILTKAMDLLMLNRIKESYCEIKEGEIDAVAVVHSYEDGMPPGSHKTRLIALNVPPMGLFYPKLLV 410 (598)
Q Consensus 331 ~lL~~~~~~p~~~~~~l~~~~d~~l~e~lKe~~c~v~~~~~~~~~~~~~~~~~~p~~~~k~~~~~~~~aP~~lF~P~~~~ 410 (598)
+||..++ ++++...|++.++++||++||++-+ ++. +..+. .....+.
T Consensus 192 ~LLl~rG-------YafN~tADFETVR~iKEKLCYisYd-~e~-------e~kLa--lETTvLv---------------- 238 (389)
T KOG0677|consen 192 KLLLRRG-------YAFNHTADFETVREIKEKLCYISYD-LEL-------EQKLA--LETTVLV---------------- 238 (389)
T ss_pred HHHHhhc-------cccccccchHHHHHHHhhheeEeec-hhh-------hhHhh--hhheeee----------------
Confidence 9998776 4688899999999999999999843 110 00000 0000000
Q ss_pred CCCCCCCCCCCCCCcccccCCCccccCC-CCCCCCCCCC-CCCCCCCCCCCCCCccCCCCCcccCCCHHHHHHHHHhcCC
Q 007563 411 PDVYPPPPRSWFNDYEDMLEDTWHTDFP-RRSDISDNFY-PGINVGLPMWESYPVLTTKPKKEEKIGLAEAVTSSILSTG 488 (598)
Q Consensus 411 ~~~~~~p~~~~~~d~~d~~~d~~~~~~~-er~~~~E~lf-p~~~~~~~~~~~~~~~~~~~~~~~~~~L~~aI~~sI~~~~ 488 (598)
.+| .+||+..+..+ |||.+||.|| |..+. .+..|+.++++++|+.+
T Consensus 239 ------------~~Y--tLPDGRvIkvG~ERFeAPE~LFqP~Li~-----------------VE~~G~aellF~~iQaa- 286 (389)
T KOG0677|consen 239 ------------ESY--TLPDGRVIKVGGERFEAPEALFQPHLIN-----------------VEGPGVAELLFNTIQAA- 286 (389)
T ss_pred ------------eee--ecCCCcEEEecceeccCchhhcCcceec-----------------cCCCcHHHHHHHHHHHh-
Confidence 111 35677777776 8999999999 66554 46789999999999998
Q ss_pred ChhhHHHhhcCeEEecCCCCCCChHHHHHHHHHhhC-----CC-CCCcc--eEEEcCCCCCCccceEeceeeeccc-cCc
Q 007563 489 RIDLQRKLFCSIQLIGGVALTGGLIPAVEERVLHAI-----PS-NEAID--MVEVLQSRTNPTYVSWKGGAVLGIL-DFG 559 (598)
Q Consensus 489 ~~d~r~~L~~nIvLvGG~S~ipG~~~rL~~eL~~~~-----p~-~~~i~--~V~v~~~~~dp~~~aWkGgSIla~L-~s~ 559 (598)
++|.|..||..|+|+||+++.||+..||++||+.+. .. ..++. +|++- .|.-+.+.+++||+|||.+ ..-
T Consensus 287 DiD~R~~lYkhIVLSGGstMYPGLPSRLEkElkqlyl~rVL~~d~~~l~KfkiRIE-dPPrRKhMVflGGAVLA~imkD~ 365 (389)
T KOG0677|consen 287 DIDIRSELYKHIVLSGGSTMYPGLPSRLEKELKQLYLDRVLKGDTDKLKKFKIRIE-DPPRRKHMVFLGGAVLAGIMKDK 365 (389)
T ss_pred ccchHHHHHhHeeecCCcccCCCCcHHHHHHHHHHHHHHHHcCChhhhhheEEecc-CCCccceeEEEchHHHHHHhcCC
Confidence 999999999999999999999999999999998752 11 11222 34443 3456789999999999987 566
Q ss_pred cceeeeHHHHHhcCcceeee
Q 007563 560 RDAWIHREDWIRNGIHIGSG 579 (598)
Q Consensus 560 ~~~wItk~eyee~G~~i~~~ 579 (598)
.++|+||+||+|.|.+++.+
T Consensus 366 d~fW~skqeyqE~G~~~l~k 385 (389)
T KOG0677|consen 366 DEFWMSKQEYQEEGINVLNK 385 (389)
T ss_pred ccceecHHHHHhhhHHHHHh
Confidence 79999999999999988753
No 13
>COG5277 Actin and related proteins [Cytoskeleton]
Probab=100.00 E-value=5.8e-56 Score=478.20 Aligned_cols=365 Identities=23% Similarity=0.364 Sum_probs=279.4
Q ss_pred CceEEccccccCCCCCCceEecceecCeeeecCCCCccccHHHHHHHHHHHhhh--hcCCCCCCCCccceEEecCCCCCc
Q 007563 172 REFICGEEALRVSPTEPYCIHRPIRRGHLNISQHYPMQQVLEDLYAIWDWILTE--KLHIPRSERNLYSAILVLPESFDN 249 (598)
Q Consensus 172 ~~~~vGeeAl~~~~~~~~~l~~Pi~~G~~n~~~~~s~~~~~~dle~i~~~~l~~--~L~i~~~~~~~y~~VLvip~~~~~ 249 (598)
++.++|+++....+...+.+++|+++|.+. +|++++.+|+|+|.+ .+...+.++ ++++++++++.
T Consensus 52 ~~~~v~ne~~~~~~~~~~~~~~p~~~g~i~---------~W~~~e~~w~~~~~~~~~~~~~~~~~----pllltep~~n~ 118 (444)
T COG5277 52 KDTYVGNEAQNDRDNSLLELRYPIENGIIL---------NWDAMEQIWDYTFFNKGDLLPSPEEH----PLLLTEPPLNP 118 (444)
T ss_pred cccccCchhhhccCCccceeecccccCccC---------CcHHHHHHHHHhhcchhhccCCCcCC----ceEEeccCCCc
Confidence 456789988887655689999999999999 999999999999998 577778888 79999999999
Q ss_pred HHHHH-HHHHHHHhcCCCeEeeehhhHHHHhhcCCc--eEEEEEeCCCcEEEEEeeCCeeeccCcEEeccccccChHHHH
Q 007563 250 REIKE-MLSIVLRDLRFASAVVHQEGLAAVFGNGLS--TACVVNMGAQVTSVICVEDGVALPNTEKTLPFGGEVQILDIS 326 (598)
Q Consensus 250 ~~vr~-l~ellfe~~~f~~v~~~qesv~a~fgaG~~--sa~VVDiGa~~TsV~pV~dG~~l~~s~~~l~~GG~~~~~dit 326 (598)
.+.|+ +++++||.|+|+++++..+++|++|+.|.+ +|||||+|++.|+|+||+||+++.++++++++||+ ++|
T Consensus 119 ~~~re~~~e~~fE~~~vp~~~~~~~~~l~~ya~g~~~~~g~ViD~G~~~t~v~PV~DG~~l~~a~~ri~~gG~----~it 194 (444)
T COG5277 119 PSNREKITELLFETLNVPALYLAIQAVLSLYASGSSDETGLVIDSGDSVTHVIPVVDGIVLPKAVKRIDIGGR----DIT 194 (444)
T ss_pred HHHHHHHHHHHHHhcCCcceEeeHHHHHHHHhcCCCCCceEEEEcCCCceeeEeeeccccccccceeeecCcH----HHH
Confidence 98886 999999999999999999999999999999 99999999999999999999999999999999999 999
Q ss_pred HHHHHHHHhcCCCCCcccccccch---hhHHHHHHHHHHceeccCCc----cccccccccccCCCCCCCcceeeeeccCC
Q 007563 327 RCLLWTQRHHQTWPQIRTDILTKA---MDLLMLNRIKESYCEIKEGE----IDAVAVVHSYEDGMPPGSHKTRLIALNVP 399 (598)
Q Consensus 327 ~~l~~lL~~~~~~p~~~~~~l~~~---~d~~l~e~lKe~~c~v~~~~----~~~~~~~~~~~~~~p~~~~k~~~~~~~~a 399 (598)
.+|.++|..... +.+.+.+... .+++.++.+|+++|...... .+.....+.... .+ ..+.+
T Consensus 195 ~~l~~lL~~~~~--~~~~~~l~~e~~~~~~ei~~~ik~e~~~~~~~~~y~~~~~~~~~~e~~~-~~--~~~~~------- 262 (444)
T COG5277 195 DYLKKLLREKYP--PSRGYNLKSELVEYSSEIVNEIKEEVCETDDESAYVSLDAEEEFEEEEE-KP--AEKST------- 262 (444)
T ss_pred HHHHHHHhhccc--ccCCcccccccccccHHHHHHHHHhhccccccccchhhcchHHHHHHhh-hh--hhhcc-------
Confidence 999999987532 3344556655 78999999999999443200 000000000000 00 00000
Q ss_pred CCCCCCCcccCCCCCCCCCCCCCCCcccccCCCccccCC-C-CCCCCCCCC-CC--CCCCCCCCC----C-------CCc
Q 007563 400 PMGLFYPKLLVPDVYPPPPRSWFNDYEDMLEDTWHTDFP-R-RSDISDNFY-PG--INVGLPMWE----S-------YPV 463 (598)
Q Consensus 400 P~~lF~P~~~~~~~~~~p~~~~~~d~~d~~~d~~~~~~~-e-r~~~~E~lf-p~--~~~~~~~~~----~-------~~~ 463 (598)
...|.+.-. . ... .-....+++..+.++ + |+.+||.+| |. ..+ +.... + ...
T Consensus 263 -~~~~~~~~~---~--~~~-----~~~~~~p~~~~i~~~~e~rf~~pE~lF~pe~~~~~-l~~~~~~~~~~~~~~~~~~~ 330 (444)
T COG5277 263 -ESTFQLSKE---T--SIA-----KESKELPDGEEIEFGNEERFKAPEILFKPELPISG-LEEAGKIDESKQELVAENYE 330 (444)
T ss_pred -cccccccch---h--ccc-----cccccCCCCceEeechhhhhhcchhhcCCcccccc-ccccccchhhhhhhhhhccc
Confidence 000110000 0 000 001134455556555 6 999999999 55 221 11000 0 000
Q ss_pred cCCCCCcccCCCHHHHHHHHHhcCCChhhHHHhhcCeEEecCCCCCCChHHHHHHHHHhhCCCCCCcceEEEcCCCCCCc
Q 007563 464 LTTKPKKEEKIGLAEAVTSSILSTGRIDLQRKLFCSIQLIGGVALTGGLIPAVEERVLHAIPSNEAIDMVEVLQSRTNPT 543 (598)
Q Consensus 464 ~~~~~~~~~~~~L~~aI~~sI~~~~~~d~r~~L~~nIvLvGG~S~ipG~~~rL~~eL~~~~p~~~~i~~V~v~~~~~dp~ 543 (598)
........+..||+++|.+||..| +.|.|+.||+||+|+||+|++|||.+||++||..+.|... .|.|.+. .||.
T Consensus 331 ~~~~~~~~~~~gl~e~v~~si~~~-~~~~r~~l~~nivitGGts~~pg~~~Rl~~el~~~~p~~~---~v~v~~~-~~~~ 405 (444)
T COG5277 331 ISPTNLGNDIAGLPELVYQSIQIC-DEDVRKSLYSNIVLTGGTSKIPGFAERLQKELTSLAPSIW---KVSVIPP-PDPS 405 (444)
T ss_pred cccccccccccchHHHHHHHHHhc-cHHHHHHHhhCEEEecCccCCCCHHHHHHHHHHhhcCCCC---ceeeecC-Cchh
Confidence 111122245789999999999999 8999999999999999999999999999999999998743 5677754 5999
Q ss_pred cceEeceeeeccccCccceeeeHHHHHhcCcceeeeccc
Q 007563 544 YVSWKGGAVLGILDFGRDAWIHREDWIRNGIHIGSGRKY 582 (598)
Q Consensus 544 ~~aWkGgSIla~L~s~~~~wItk~eyee~G~~i~~~K~~ 582 (598)
+.+|+||||||++++|+.+||||+||+|+|++++++||+
T Consensus 406 ~~~W~GaSila~~~~~~~~~itk~eY~e~G~~~~~~~~~ 444 (444)
T COG5277 406 LDAWLGASILASLETFQQLWITKEEYEEHGPDILQEKRF 444 (444)
T ss_pred hccccchhhhccccchhheEeeHHHhhhhhhHHHhhccC
Confidence 999999999999999999999999999999999998874
No 14
>KOG0680 consensus Actin-related protein - Arp6p [Cytoskeleton]
Probab=100.00 E-value=1.1e-51 Score=409.63 Aligned_cols=336 Identities=20% Similarity=0.289 Sum_probs=264.6
Q ss_pred EEccccccCCCCCCceEecceecCeeeecCCCCccccHHHHHHHHHHHhhhh-cCCCCCCCCccceEEecCCCCCcHHHH
Q 007563 175 ICGEEALRVSPTEPYCIHRPIRRGHLNISQHYPMQQVLEDLYAIWDWILTEK-LHIPRSERNLYSAILVLPESFDNREIK 253 (598)
Q Consensus 175 ~vGeeAl~~~~~~~~~l~~Pi~~G~~n~~~~~s~~~~~~dle~i~~~~l~~~-L~i~~~~~~~y~~VLvip~~~~~~~vr 253 (598)
|+|++.-.+.+...+..++|+++|.+. +|+-...+|+++|.+. ++++-+++ -++++++.|+-..+.
T Consensus 43 f~~nei~ec~D~ssL~y~rp~erGyLv---------nW~tq~~vWDy~f~~~~~~~~~~~~----~ivlTep~~~~psi~ 109 (400)
T KOG0680|consen 43 FLANEIDECKDISSLFYRRPHERGYLV---------NWDTQSQVWDYCFGNPGFDVEGKDH----NIVLTEPCMTFPSIQ 109 (400)
T ss_pred hhhhhhhhccCccceEEeehhhcceeE---------eehhHHHHHHHHhcCCCcCcccCcc----eEEEecccccccchh
Confidence 455555555444567889999999999 9999999999999643 33455566 489999999988888
Q ss_pred H-HHHHHHHhcCCCeEeeehhhHHHHhh---cCC--------ceEEEEEeCCCcEEEEEeeCCeeeccCcEEeccccccC
Q 007563 254 E-MLSIVLRDLRFASAVVHQEGLAAVFG---NGL--------STACVVNMGAQVTSVICVEDGVALPNTEKTLPFGGEVQ 321 (598)
Q Consensus 254 ~-l~ellfe~~~f~~v~~~qesv~a~fg---aG~--------~sa~VVDiGa~~TsV~pV~dG~~l~~s~~~l~~GG~~~ 321 (598)
+ +.++|||+|+|.+++=...+.+++|- .+. -+++|||.|++.|+|+||.+|+....+++|+++||+
T Consensus 110 ~~t~eilFEey~fd~v~kttaa~lva~~~~~~~ne~~tt~~~~c~lVIDsGysfThIip~v~g~~~~qaV~RiDvGGK-- 187 (400)
T KOG0680|consen 110 EHTDEILFEEYQFDAVLKTTAAVLVAFTKYVRNNEDSTTTSSECCLVIDSGYSFTHIIPVVKGIPYYQAVKRIDVGGK-- 187 (400)
T ss_pred hhHHHHHHHHhccceEeecCHHHhcchhhhccCCccccccccceEEEEeCCCceEEEehhhcCcchhhceEEeecchH--
Confidence 7 99999999999999999999998876 121 158999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHhcCCCCCcccccccchhhHHHHHHHHHHceeccCC---ccccccccccccCCCCCCCcceeeeeccC
Q 007563 322 ILDISRCLLWTQRHHQTWPQIRTDILTKAMDLLMLNRIKESYCEIKEG---EIDAVAVVHSYEDGMPPGSHKTRLIALNV 398 (598)
Q Consensus 322 ~~dit~~l~~lL~~~~~~p~~~~~~l~~~~d~~l~e~lKe~~c~v~~~---~~~~~~~~~~~~~~~p~~~~k~~~~~~~~ 398 (598)
.+|++|++.+.-++ ++...+..+++++||.+|+|+++ +++. .+...+. .|... .++
T Consensus 188 --~LTn~LKE~iSyR~---------lNvmdET~vVNeiKEdvcfVSqnF~~~m~~-----~~~k~~~---~~~~i--~Yv 246 (400)
T KOG0680|consen 188 --ALTNLLKETISYRH---------LNVMDETYVVNEIKEDVCFVSQNFKEDMDI-----AKTKFQE---NKVMI--DYV 246 (400)
T ss_pred --HHHHHHHHHhhhhh---------hcccchhhhhhhhhhheEEechhhHHHHHH-----Hhhcccc---ceeEE--EEe
Confidence 99999999987553 44556778999999999999974 1211 0010000 00100 012
Q ss_pred CCCCCCCCccc---CCCCCCCCCCCCCCCcccccCCCccccCC-CCCCCCCCCC-CCCCCCCCCCCCCCccCCCCCcccC
Q 007563 399 PPMGLFYPKLL---VPDVYPPPPRSWFNDYEDMLEDTWHTDFP-RRSDISDNFY-PGINVGLPMWESYPVLTTKPKKEEK 473 (598)
Q Consensus 399 aP~~lF~P~~~---~~~~~~~p~~~~~~d~~d~~~d~~~~~~~-er~~~~E~lf-p~~~~~~~~~~~~~~~~~~~~~~~~ 473 (598)
.|. |..... .++.. ....|.+.+.++ |||.+||.|| |+.++ ...
T Consensus 247 LPD--F~T~k~Gyvr~~~v------------k~~~d~qii~L~nErF~IPEilF~Psdi~-----------------I~q 295 (400)
T KOG0680|consen 247 LPD--FSTSKRGYVRNEDV------------KLPEDEQIITLTNERFTIPEILFSPSDIG-----------------IQQ 295 (400)
T ss_pred cCC--cccccceeEecCCC------------CCCCCcceeeecccccccchhhcChhhcC-----------------ccc
Confidence 222 111100 00000 012244556565 9999999999 77765 578
Q ss_pred CCHHHHHHHHHhcCCChhhHHHhhcCeEEecCCCCCCChHHHHHHHHHhhCCCCCCcceEEEcCCCCCCccceEeceeee
Q 007563 474 IGLAEAVTSSILSTGRIDLQRKLFCSIQLIGGVALTGGLIPAVEERVLHAIPSNEAIDMVEVLQSRTNPTYVSWKGGAVL 553 (598)
Q Consensus 474 ~~L~~aI~~sI~~~~~~d~r~~L~~nIvLvGG~S~ipG~~~rL~~eL~~~~p~~~~i~~V~v~~~~~dp~~~aWkGgSIl 553 (598)
+||++||.+||..| |.++|+.|+.||+++||++++|||.+||..||++++|..+ .|+|.. +.||..-+|.||+-+
T Consensus 296 ~GIpEAV~esl~~~-Pe~~~p~l~~NIv~iGGn~~fPgF~~RL~~Elr~l~P~d~---~v~V~~-p~dp~~~~W~~g~~~ 370 (400)
T KOG0680|consen 296 PGIPEAVLESLSML-PEEVRPLLLENIVCIGGNSNFPGFRQRLARELRSLLPADW---EVSVSV-PEDPITFAWEGGSEF 370 (400)
T ss_pred CCchHHHHHHHHhC-HHHHHHHHHhcEEEecCccCCcchHHHHHHHHHhhCCccc---eEEEec-CCCcceeeehhcccc
Confidence 99999999999999 9999999999999999999999999999999999999987 456664 479999999999999
Q ss_pred ccccCccceeeeHHHHHhcCcceeeeccc
Q 007563 554 GILDFGRDAWIHREDWIRNGIHIGSGRKY 582 (598)
Q Consensus 554 a~L~s~~~~wItk~eyee~G~~i~~~K~~ 582 (598)
+.+++|+.+||||+||+|+|.+++.+|++
T Consensus 371 ~~~~~~~~~~itR~dy~E~G~~~~~~~~~ 399 (400)
T KOG0680|consen 371 AKTDSFEKAVITREDYEEHGPSWCTKKRF 399 (400)
T ss_pred ccCcchhcceecHhhHhhcCchhhhhhcc
Confidence 99999999999999999999999988765
No 15
>KOG0678 consensus Actin-related protein Arp2/3 complex, subunit Arp3 [Cytoskeleton]
Probab=100.00 E-value=9.5e-40 Score=325.10 Aligned_cols=328 Identities=21% Similarity=0.309 Sum_probs=256.4
Q ss_pred CceEEccccccCCCCCCceEecceecCeeeecCCCCccccHHHHHHHHHHHhhhhcCCCCCCCCccceEEecCCCCCcHH
Q 007563 172 REFICGEEALRVSPTEPYCIHRPIRRGHLNISQHYPMQQVLEDLYAIWDWILTEKLHIPRSERNLYSAILVLPESFDNRE 251 (598)
Q Consensus 172 ~~~~vGeeAl~~~~~~~~~l~~Pi~~G~~n~~~~~s~~~~~~dle~i~~~~l~~~L~i~~~~~~~y~~VLvip~~~~~~~ 251 (598)
-++++|++|+. ...|.|.|||++|.+. +|+.+|++|+..+.++|..+|+++ -.|+++++.++.+
T Consensus 57 ldf~ig~eal~---~~~ysl~ypiRhg~ve---------~wd~mer~~~q~ifkylr~ePedh----~fLlteppln~pe 120 (415)
T KOG0678|consen 57 LDFFIGDEALD---ATTYSLKYPIRHGQVE---------DWDLMERFWEQCIFKYLRAEPEDH----YFLLTEPPLNQPE 120 (415)
T ss_pred cceecccHHHh---hcccccccceeccccc---------cHHHHHHHHhhhhhhhhcCCcccc----eEEecCCCCCCch
Confidence 46899999998 3489999999999998 999999999999999999999998 5899999999999
Q ss_pred HHH-HHHHHHHhcCCCeEeeehhhHHHHhhcC--------CceEEEEEeCCCcEEEEEeeCCeeeccCcEEeccccccCh
Q 007563 252 IKE-MLSIVLRDLRFASAVVHQEGLAAVFGNG--------LSTACVVNMGAQVTSVICVEDGVALPNTEKTLPFGGEVQI 322 (598)
Q Consensus 252 vr~-l~ellfe~~~f~~v~~~qesv~a~fgaG--------~~sa~VVDiGa~~TsV~pV~dG~~l~~s~~~l~~GG~~~~ 322 (598)
.|+ ..+++||.|+++.+++.-++++|+-+.= .-||+|||.|.+.|+|.||.||+++..++..+++.|+
T Consensus 121 nreytaeImfEsfnvpglyiAVqavLALaaswts~~v~er~ltG~VidsGdgvThvipvaEgyVigScik~iPiagr--- 197 (415)
T KOG0678|consen 121 NREYTAEIMFESFNVPGLYIAVQAVLALAASWTSRQVGERFLTGIVIDSGDGVTHVIPVAEGYVIGSCIKHIPIAGR--- 197 (415)
T ss_pred hhHHHHHhhhhhccCchHHHHHHHHHHHHHHHHHhhhhhheeeeEEEecCCCeeEEEEeecceEEeeeeccccccCC---
Confidence 998 8999999999999999999999875431 2389999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcCCCCCcccccccchhhHHHHHHHHHHceeccCCccccccccccccCCCCCCCcceeeeeccCCCCC
Q 007563 323 LDISRCLLWTQRHHQTWPQIRTDILTKAMDLLMLNRIKESYCEIKEGEIDAVAVVHSYEDGMPPGSHKTRLIALNVPPMG 402 (598)
Q Consensus 323 ~dit~~l~~lL~~~~~~p~~~~~~l~~~~d~~l~e~lKe~~c~v~~~~~~~~~~~~~~~~~~p~~~~k~~~~~~~~aP~~ 402 (598)
|+|.++.+||+.++.+++. ...++.++.+||++|++.++-+. .+..|..+ |....| +....+
T Consensus 198 -diT~fiQ~llRer~~~iP~-------e~sl~tak~iKe~ycy~cPdivk---ef~k~d~e-p~K~ik-q~~~~~----- 259 (415)
T KOG0678|consen 198 -DITYFIQQLLREREVGIPP-------EQSLETAKAIKEKYCYTCPDIVK---EFAKYDRE-PAKWIK-QYTGIN----- 259 (415)
T ss_pred -chhHHHHHHhhCCCCCCCh-------HHhhhhhHHHHhhhcccCcHHHH---HHHHhccC-HHHHHH-HHhccc-----
Confidence 9999999999887754432 23568899999999998865221 11122211 110000 000000
Q ss_pred CCCCcccCCCCCCCCCCCCCCCcccccCCCccccCC-CCCCCCCCCC-CCCCCCCCCCCCCCccCCCCCcccCCCHHHHH
Q 007563 403 LFYPKLLVPDVYPPPPRSWFNDYEDMLEDTWHTDFP-RRSDISDNFY-PGINVGLPMWESYPVLTTKPKKEEKIGLAEAV 480 (598)
Q Consensus 403 lF~P~~~~~~~~~~p~~~~~~d~~d~~~d~~~~~~~-er~~~~E~lf-p~~~~~~~~~~~~~~~~~~~~~~~~~~L~~aI 480 (598)
.... ....++.+ +||-.+|.+| |....+ .-..+|++.|
T Consensus 260 -----~i~~-------------------~~~~vDvgyerFlgpEiff~Pe~a~~----------------d~~~~~~~~v 299 (415)
T KOG0678|consen 260 -----VITG-------------------KKFVVDVGYERFLGPEIFFHPEFANP----------------DFLTPLSEVV 299 (415)
T ss_pred -----hhcC-------------------CceeecccHHhhcChhhhcCccccCC----------------ccCcchHHHh
Confidence 0000 00122233 5888888888 543221 2346799999
Q ss_pred HHHHhcCCChhhHHHhhcCeEEecCCCCCCChHHHHHHHHHhhCCC----C--------CCcceEEEcCCCCCCccceEe
Q 007563 481 TSSILSTGRIDLQRKLFCSIQLIGGVALTGGLIPAVEERVLHAIPS----N--------EAIDMVEVLQSRTNPTYVSWK 548 (598)
Q Consensus 481 ~~sI~~~~~~d~r~~L~~nIvLvGG~S~ipG~~~rL~~eL~~~~p~----~--------~~i~~V~v~~~~~dp~~~aWk 548 (598)
...|++| ++|.||-||+||++.||.+++.+|..||+.++..+... + ..+ .|+++.- .-.++++|.
T Consensus 300 d~~Iq~~-pIdvrr~ly~nivlsggst~fk~fgr~lqrD~kr~vd~rl~~s~~lsg~k~~~v-dvqvish-~~qr~avwf 376 (415)
T KOG0678|consen 300 DWVIQHC-PIDVRRPLYKNIVLSGGSTMFKDFGRRLQRDLKRLVDTRLAESEGLSGIKSKPV-DVQVLSH-LLQRTAVWF 376 (415)
T ss_pred hhhhhhC-CcccchhhhhHHhhccchHHHHHhhhhccHHHHHHHHHHHHHhcccccCCCCCc-eeehhhh-hhhhcceec
Confidence 9999999 99999999999999999999999999999988754211 1 012 3566542 345789999
Q ss_pred ceeeeccccCccceeeeHHHHHhcCcceeee
Q 007563 549 GGAVLGILDFGRDAWIHREDWIRNGIHIGSG 579 (598)
Q Consensus 549 GgSIla~L~s~~~~wItk~eyee~G~~i~~~ 579 (598)
|||+||+.+.|-..+-||+||+|+|++|++.
T Consensus 377 ggs~lastpef~~~~~tk~~yee~g~si~r~ 407 (415)
T KOG0678|consen 377 GGSKLASTPEFVPACHTKEDYEEYGPSICRT 407 (415)
T ss_pred cCccccCCcccccccCcchhhhhhChhhhhc
Confidence 9999999999999999999999999999853
No 16
>KOG0681 consensus Actin-related protein - Arp5p [Cytoskeleton]
Probab=100.00 E-value=5e-37 Score=322.58 Aligned_cols=351 Identities=20% Similarity=0.280 Sum_probs=254.8
Q ss_pred ceEecceecCeeeecCCCCccccHHHHHHHHHHHhhhhcCCCCCCCCccceEEecCCCCCcHHHHH-HHHHHHHhcCCCe
Q 007563 189 YCIHRPIRRGHLNISQHYPMQQVLEDLYAIWDWILTEKLHIPRSERNLYSAILVLPESFDNREIKE-MLSIVLRDLRFAS 267 (598)
Q Consensus 189 ~~l~~Pi~~G~~n~~~~~s~~~~~~dle~i~~~~l~~~L~i~~~~~~~y~~VLvip~~~~~~~vr~-l~ellfe~~~f~~ 267 (598)
...+.||.+..+. +|+-+|.|++|+| .+||+++++. -+|+++|+.++++.+.|. |.++|||.+|||+
T Consensus 80 s~~rSPFd~nVvt---------Nwel~E~ilDY~F-~~LG~~~~~i--dhPIilTE~laNP~~~R~~m~elLFE~YgvP~ 147 (645)
T KOG0681|consen 80 SSPRSPFDRNVVT---------NWELMEQILDYIF-GKLGVDGQGI--DHPIILTEALANPVYSRSEMVELLFETYGVPK 147 (645)
T ss_pred ccCCCCCcCCccc---------cHHHHHHHHHHHH-HhcCCCccCC--CCCeeeehhccChHHHHHHHHHHHHHHcCCcc
Confidence 5578899998888 9999999999999 6899988652 348999999999999985 9999999999999
Q ss_pred EeeehhhHHHHhh-cCCc---eEEEEEeCCCcEEEEEeeCCeeeccCcEEeccccccChHHHHHHHHHHHHhcCCCCCcc
Q 007563 268 AVVHQEGLAAVFG-NGLS---TACVVNMGAQVTSVICVEDGVALPNTEKTLPFGGEVQILDISRCLLWTQRHHQTWPQIR 343 (598)
Q Consensus 268 v~~~qesv~a~fg-aG~~---sa~VVDiGa~~TsV~pV~dG~~l~~s~~~l~~GG~~~~~dit~~l~~lL~~~~~~p~~~ 343 (598)
|.+.-+++.|+|- .+.+ +|+||++|++.|+|.||.||..+-....|+++||. .++.||..||+.+ +|.
T Consensus 148 V~yGIDslfS~~hN~~~~~~~~~liis~g~~~T~vipvldG~~il~~~kRiN~GG~----qa~dYL~~Lmq~K--yp~-- 219 (645)
T KOG0681|consen 148 VAYGIDSLFSFYHNYGKSSNKSGLIISMGHSATHVIPVLDGRLILKDVKRINWGGY----QAGDYLSRLMQLK--YPF-- 219 (645)
T ss_pred eeechhhHHHHhhccCcccCcceEEEecCCCcceeEEEecCchhhhcceeeccCcc----hHHHHHHHHHhcc--Ccc--
Confidence 9999999999993 3433 59999999999999999999999888999999999 9999999999875 232
Q ss_pred cccccchhhHHHHHHHHHHceeccCC---ccccccc-----------cccccC---C----CCCC-Cccee------eee
Q 007563 344 TDILTKAMDLLMLNRIKESYCEIKEG---EIDAVAV-----------VHSYED---G----MPPG-SHKTR------LIA 395 (598)
Q Consensus 344 ~~~l~~~~d~~l~e~lKe~~c~v~~~---~~~~~~~-----------~~~~~~---~----~p~~-~~k~~------~~~ 395 (598)
.-+..++..++.|++.+||++.+ ++..... ...|.. + .+.. .++-+ ++.
T Consensus 220 ---~~~~~t~sk~E~l~~eHcyis~DY~eei~~~l~~d~~d~~~~~~qlP~~evl~~~e~~l~Ae~kqekRlq~~a~lkr 296 (645)
T KOG0681|consen 220 ---HLNAFTGSKAERLLHEHCYISPDYREEIIKILEMDYYDENRNYFQLPYTEVLAEVELALTAEKKQEKRLQEQAALKR 296 (645)
T ss_pred ---chhhcCHHHHHHHhhhhceeCcchHHHHHHHhhhhhhhccceEEecccccccchhhhhccHHHHHHHHHHHHHHHhh
Confidence 12346789999999999999975 2111000 001100 0 0000 00000 000
Q ss_pred c--c--C------------------CCCCCCC----------CcccCCCC---------------------------C--
Q 007563 396 L--N--V------------------PPMGLFY----------PKLLVPDV---------------------------Y-- 414 (598)
Q Consensus 396 ~--~--~------------------aP~~lF~----------P~~~~~~~---------------------------~-- 414 (598)
+ + . -+..--+ |..+..+. .
T Consensus 297 v~k~~~re~~redeqql~~~~kaq~e~e~~~D~~q~~~ll~v~~eL~~d~lk~k~~qr~lkas~dar~rar~eke~Er~~ 376 (645)
T KOG0681|consen 297 VEKINARENRREDEQQLESYNKAQGEQESNLDLEQKFPLLNVPAELDEDQLKEKKKQRILKASTDARLRARVEKELERLN 376 (645)
T ss_pred HHHHHHHHhhhhhHHHHHHHHHhhhchhcCccHhhhchhhcchhhhCHHHHHHHHHHHHHHhhhhhhccccccchHHHhh
Confidence 0 0 0 0000000 00010000 0
Q ss_pred --CCCCC----CCCC--------------------------------------------------------C--------
Q 007563 415 --PPPPR----SWFN--------------------------------------------------------D-------- 424 (598)
Q Consensus 415 --~~p~~----~~~~--------------------------------------------------------d-------- 424 (598)
..+.+ +|.. |
T Consensus 377 k~~~~r~~~~~swl~e~r~k~~~ller~~~kk~lk~e~~~r~s~~Sq~rmr~~~~La~~~~~rrk~~~~t~D~fg~~Ded 456 (645)
T KOG0681|consen 377 KLEEEREENLISWLEELREKLEKLLERISQKKRLKQELKDRKSHASQLRMRALARLAYEQVVRRKRKEATPDNFGARDED 456 (645)
T ss_pred cccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhHhhhHHHHhhhHHHHHHHhcccCCccccccchhh
Confidence 00000 0000 0
Q ss_pred ---cccc---cC----------------------------CCc------------cccCC-CCCCCCCCCC-CCCCCCCC
Q 007563 425 ---YEDM---LE----------------------------DTW------------HTDFP-RRSDISDNFY-PGINVGLP 456 (598)
Q Consensus 425 ---~~d~---~~----------------------------d~~------------~~~~~-er~~~~E~lf-p~~~~~~~ 456 (598)
|+|. .+ |+. .+.++ ||..+||.+| |+.+|
T Consensus 457 w~vYe~lee~~~~~~~dl~~l~~~L~e~Dp~F~~~~~~~~d~~~~~~p~~~~e~~qlh~nVEriRvPEIiFqPsiiG--- 533 (645)
T KOG0681|consen 457 WDVYEDLEEENKSILEDLKSLNHELLEFDPHFTQYVEGTTDPRNGVLPGFTAEDYQLHLNVERIRVPEIIFQPSIIG--- 533 (645)
T ss_pred HHHHHHhhhhhhhHHHHHHHHHHHHHhhCcccccccccccCcccCcchhHHHhhhhhhhcceeeccceeeecccccc---
Confidence 0000 00 000 00123 5788899999 77666
Q ss_pred CCCCCCccCCCCCcccCCCHHHHHHHHHhcCCChhhHHHhhcCeEEecCCCCCCChHHHHHHHHHhhCCCCCCcceEEEc
Q 007563 457 MWESYPVLTTKPKKEEKIGLAEAVTSSILSTGRIDLQRKLFCSIQLIGGVALTGGLIPAVEERVLHAIPSNEAIDMVEVL 536 (598)
Q Consensus 457 ~~~~~~~~~~~~~~~~~~~L~~aI~~sI~~~~~~d~r~~L~~nIvLvGG~S~ipG~~~rL~~eL~~~~p~~~~i~~V~v~ 536 (598)
.+++||.+++...+.+. +.|.+.+|.+||+||||.|++||+.+||+.+|....|... .|+|.
T Consensus 534 --------------~dQaGl~Ei~~~il~r~-p~~eq~~lV~nVllTGG~s~~pGmkeRi~kElt~mrP~gS---~i~V~ 595 (645)
T KOG0681|consen 534 --------------IDQAGLAEIMDTILRRY-PHDEQEKLVSNVLLTGGCSQLPGMKERIKKELTSMRPVGS---SINVV 595 (645)
T ss_pred --------------chhhhHHHHHHHHHHhC-chhhhHhhhhheEeecccccCcCHHHHHHHHhheecccCC---ceEEE
Confidence 68899999999999998 8999999999999999999999999999999999998765 44665
Q ss_pred CCCCCCccceEeceeeeccccCccceeeeHHHHHhcCcceeeecccCc
Q 007563 537 QSRTNPTYVSWKGGAVLGILDFGRDAWIHREDWIRNGIHIGSGRKYKD 584 (598)
Q Consensus 537 ~~~~dp~~~aWkGgSIla~L~s~~~~wItk~eyee~G~~i~~~K~~~~ 584 (598)
..+||...+|+|||.+|.-.+|..-||||+||+|.|...+.+.+..-
T Consensus 596 -rasdP~LDAW~GA~~~a~n~~f~~~~~Tr~dy~E~G~e~~kEh~~~n 642 (645)
T KOG0681|consen 596 -RASDPVLDAWRGASAWAANPTFTLTQITRKDYEEKGEEYLKEHVASN 642 (645)
T ss_pred -ecCCcchhhhhhhHHhhcCcccchhhhhHHhhhhhhHHHHHHHhhcc
Confidence 34799999999999999999999999999999999999888776543
No 17
>PRK13927 rod shape-determining protein MreB; Provisional
Probab=99.96 E-value=2.2e-28 Score=258.38 Aligned_cols=271 Identities=18% Similarity=0.207 Sum_probs=195.5
Q ss_pred eEEccccccCCC--CCCceEecceecCeeeecCCCCccccHHHHHHHHHHHhhhhcCCCCCCCCccceEEecCCCCCcHH
Q 007563 174 FICGEEALRVSP--TEPYCIHRPIRRGHLNISQHYPMQQVLEDLYAIWDWILTEKLHIPRSERNLYSAILVLPESFDNRE 251 (598)
Q Consensus 174 ~~vGeeAl~~~~--~~~~~l~~Pi~~G~~n~~~~~s~~~~~~dle~i~~~~l~~~L~i~~~~~~~y~~VLvip~~~~~~~ 251 (598)
+++|++|.+... ..++.+.+||++|.+. +|+.++.+|++++.+.+.. +.+++ .++++.|.+.+..
T Consensus 44 ~~vG~~a~~~~~~~~~~~~~~~pi~~G~i~---------d~~~~~~ll~~~~~~~~~~-~~~~~---~~vi~vP~~~~~~ 110 (334)
T PRK13927 44 LAVGEEAKQMLGRTPGNIVAIRPMKDGVIA---------DFDVTEKMLKYFIKKVHKN-FRPSP---RVVICVPSGITEV 110 (334)
T ss_pred EEecHHHHHHhhcCCCCEEEEecCCCCeec---------CHHHHHHHHHHHHHHHhhc-cCCCC---cEEEEeCCCCCHH
Confidence 578998876532 2468899999999998 9999999999999877766 44443 5677766666666
Q ss_pred HHHHHHHHHHhcCCCeEeeehhhHHHHhhcCC-----ceEEEEEeCCCcEEEEEe-eCCeeeccCcEEeccccccChHHH
Q 007563 252 IKEMLSIVLRDLRFASAVVHQEGLAAVFGNGL-----STACVVNMGAQVTSVICV-EDGVALPNTEKTLPFGGEVQILDI 325 (598)
Q Consensus 252 vr~l~ellfe~~~f~~v~~~qesv~a~fgaG~-----~sa~VVDiGa~~TsV~pV-~dG~~l~~s~~~l~~GG~~~~~di 325 (598)
.|++++.+|+.+|++.+.++.+++||+|++|. ..++|||+|+++|+|++| .+|++...+ .++||+ ++
T Consensus 111 ~r~~~~~a~~~ag~~~~~li~ep~aaa~~~g~~~~~~~~~lvvDiGggttdvs~v~~~~~~~~~~---~~lGG~----~i 183 (334)
T PRK13927 111 ERRAVRESALGAGAREVYLIEEPMAAAIGAGLPVTEPTGSMVVDIGGGTTEVAVISLGGIVYSKS---VRVGGD----KF 183 (334)
T ss_pred HHHHHHHHHHHcCCCeeccCCChHHHHHHcCCcccCCCeEEEEEeCCCeEEEEEEecCCeEeeCC---cCChHH----HH
Confidence 67899999999999999999999999999998 357999999999999999 888887655 479999 99
Q ss_pred HHHHHHHHHhcCCCCCcccccccchhhHHHHHHHHHHceeccCCccccccccccccCCCCCCCcceeeeeccCCCCCCCC
Q 007563 326 SRCLLWTQRHHQTWPQIRTDILTKAMDLLMLNRIKESYCEIKEGEIDAVAVVHSYEDGMPPGSHKTRLIALNVPPMGLFY 405 (598)
Q Consensus 326 t~~l~~lL~~~~~~p~~~~~~l~~~~d~~l~e~lKe~~c~v~~~~~~~~~~~~~~~~~~p~~~~k~~~~~~~~aP~~lF~ 405 (598)
|+.|.+++.... .+. .+...+|++|+++|++..++-.. ...+...... .+
T Consensus 184 d~~l~~~l~~~~--------~~~--~~~~~ae~iK~~~~~~~~~~~~~----------------~~~~~~~~~~-~~--- 233 (334)
T PRK13927 184 DEAIINYVRRNY--------NLL--IGERTAERIKIEIGSAYPGDEVL----------------EMEVRGRDLV-TG--- 233 (334)
T ss_pred HHHHHHHHHHHh--------CcC--cCHHHHHHHHHHhhccCCCCCCc----------------eEEEeCcccC-CC---
Confidence 999998876431 111 34567999999999876421000 0000000000 00
Q ss_pred CcccCCCCCCCCCCCCCCCcccccCCCccccCCCCCCCCCCCCCCCCCCCCCCCCCCccCCCCCcccCCCHHHHHHHHHh
Q 007563 406 PKLLVPDVYPPPPRSWFNDYEDMLEDTWHTDFPRRSDISDNFYPGINVGLPMWESYPVLTTKPKKEEKIGLAEAVTSSIL 485 (598)
Q Consensus 406 P~~~~~~~~~~p~~~~~~d~~d~~~d~~~~~~~er~~~~E~lfp~~~~~~~~~~~~~~~~~~~~~~~~~~L~~aI~~sI~ 485 (598)
.++ .+.++ |....|.+++. ...+.++|.++|.
T Consensus 234 -----------------------~~~--~~~i~-~~~~~e~i~~~----------------------~~~i~~~i~~~l~ 265 (334)
T PRK13927 234 -----------------------LPK--TITIS-SNEIREALQEP----------------------LSAIVEAVKVALE 265 (334)
T ss_pred -----------------------CCe--EEEEC-HHHHHHHHHHH----------------------HHHHHHHHHHHHH
Confidence 000 00000 11111333321 2368899999999
Q ss_pred cCCChhhHHHhhcC-eEEecCCCCCCChHHHHHHHHHhhCCCCCCcceEEEcCCCCCCccceEeceeeecc
Q 007563 486 STGRIDLQRKLFCS-IQLIGGVALTGGLIPAVEERVLHAIPSNEAIDMVEVLQSRTNPTYVSWKGGAVLGI 555 (598)
Q Consensus 486 ~~~~~d~r~~L~~n-IvLvGG~S~ipG~~~rL~~eL~~~~p~~~~i~~V~v~~~~~dp~~~aWkGgSIla~ 555 (598)
+| +.+.+++++.+ |+|+||+|++|||.++|++++.. +|.+. .+|..++=.||+.++.
T Consensus 266 ~~-~~~~~~~~~~~~IvL~GG~s~ipgl~~~l~~~~~~---------~v~~~---~~P~~ava~Ga~~~~~ 323 (334)
T PRK13927 266 QT-PPELAADIVDRGIVLTGGGALLRGLDKLLSEETGL---------PVHVA---EDPLTCVARGTGKALE 323 (334)
T ss_pred HC-CchhhhhhhcCCEEEECchhhhhHHHHHHHHHHCC---------CcEec---CCHHHHHHHHHHHHHh
Confidence 99 78888899975 99999999999999999999841 23443 3677888889887763
No 18
>PRK13930 rod shape-determining protein MreB; Provisional
Probab=99.95 E-value=1.6e-27 Score=251.96 Aligned_cols=274 Identities=18% Similarity=0.183 Sum_probs=195.4
Q ss_pred ceEEccccccCCC--CCCceEecceecCeeeecCCCCccccHHHHHHHHHHHhhhhcCCCCCCCCccceEEecCCCCCcH
Q 007563 173 EFICGEEALRVSP--TEPYCIHRPIRRGHLNISQHYPMQQVLEDLYAIWDWILTEKLHIPRSERNLYSAILVLPESFDNR 250 (598)
Q Consensus 173 ~~~vGeeAl~~~~--~~~~~l~~Pi~~G~~n~~~~~s~~~~~~dle~i~~~~l~~~L~i~~~~~~~y~~VLvip~~~~~~ 250 (598)
.++||++|..... ..++.+.+||++|.+. +|++++.+|+|++++.+...+.+.+ .++++.|.+.+.
T Consensus 46 ~~~vG~~A~~~~~~~~~~~~~~~pi~~G~i~---------d~~~~e~ll~~~~~~~~~~~~~~~~---~vvit~P~~~~~ 113 (335)
T PRK13930 46 VLAVGEEAKEMLGRTPGNIEAIRPLKDGVIA---------DFEATEAMLRYFIKKARGRRFFRKP---RIVICVPSGITE 113 (335)
T ss_pred EEEEcHHHHHhhhcCCCCeEEeecCCCCeEc---------CHHHHHHHHHHHHHHHhhcccCCCC---cEEEEECCCCCH
Confidence 3689999876532 2468899999999998 9999999999999554443333222 677777777666
Q ss_pred HHHHHHHHHHHhcCCCeEeeehhhHHHHhhcCC-----ceEEEEEeCCCcEEEEEeeCCeeeccCcEEeccccccChHHH
Q 007563 251 EIKEMLSIVLRDLRFASAVVHQEGLAAVFGNGL-----STACVVNMGAQVTSVICVEDGVALPNTEKTLPFGGEVQILDI 325 (598)
Q Consensus 251 ~vr~l~ellfe~~~f~~v~~~qesv~a~fgaG~-----~sa~VVDiGa~~TsV~pV~dG~~l~~s~~~l~~GG~~~~~di 325 (598)
..|+.+..+||.+|++.++++.+++||+|++|. .+++|||+|++.|+|++|.+|.++. ....++||+ ++
T Consensus 114 ~~r~~~~~~~e~~g~~~~~lv~ep~AAa~a~g~~~~~~~~~lVvDiG~gttdvs~v~~g~~~~--~~~~~lGG~----~i 187 (335)
T PRK13930 114 VERRAVREAAEHAGAREVYLIEEPMAAAIGAGLPVTEPVGNMVVDIGGGTTEVAVISLGGIVY--SESIRVAGD----EM 187 (335)
T ss_pred HHHHHHHHHHHHcCCCeEEecccHHHHHHhcCCCcCCCCceEEEEeCCCeEEEEEEEeCCEEe--ecCcCchhH----HH
Confidence 667777778999999999999999999999998 4689999999999999999998875 356899999 99
Q ss_pred HHHHHHHHHhcCCCCCcccccccchhhHHHHHHHHHHceeccCCccccccccccccCCCCCCCcceeeeeccCCCCCCCC
Q 007563 326 SRCLLWTQRHHQTWPQIRTDILTKAMDLLMLNRIKESYCEIKEGEIDAVAVVHSYEDGMPPGSHKTRLIALNVPPMGLFY 405 (598)
Q Consensus 326 t~~l~~lL~~~~~~p~~~~~~l~~~~d~~l~e~lKe~~c~v~~~~~~~~~~~~~~~~~~p~~~~k~~~~~~~~aP~~lF~ 405 (598)
|+.+.+++..+.. +. .+...+|++|+++|++..+..... ........ ..+
T Consensus 188 d~~l~~~l~~~~~--------~~--~~~~~ae~~K~~~~~~~~~~~~~~----------------~~~~~~~~-~~~--- 237 (335)
T PRK13930 188 DEAIVQYVRRKYN--------LL--IGERTAEEIKIEIGSAYPLDEEES----------------MEVRGRDL-VTG--- 237 (335)
T ss_pred HHHHHHHHHHHhC--------CC--CCHHHHHHHHHHhhcCcCCCCCce----------------EEEECccC-CCC---
Confidence 9999998865421 11 234679999999998764311000 00000000 000
Q ss_pred CcccCCCCCCCCCCCCCCCcccccCCCccccCCCCCCCCCCCCCCCCCCCCCCCCCCccCCCCCcccCCCHHHHHHHHHh
Q 007563 406 PKLLVPDVYPPPPRSWFNDYEDMLEDTWHTDFPRRSDISDNFYPGINVGLPMWESYPVLTTKPKKEEKIGLAEAVTSSIL 485 (598)
Q Consensus 406 P~~~~~~~~~~p~~~~~~d~~d~~~d~~~~~~~er~~~~E~lfp~~~~~~~~~~~~~~~~~~~~~~~~~~L~~aI~~sI~ 485 (598)
+++ .+.++ +....|.+++. ..++.+.|.++|.
T Consensus 238 -----------------------~~~--~~~i~-~~~~~e~i~~~----------------------~~~i~~~i~~~l~ 269 (335)
T PRK13930 238 -----------------------LPK--TIEIS-SEEVREALAEP----------------------LQQIVEAVKSVLE 269 (335)
T ss_pred -----------------------CCe--eEEEC-HHHHHHHHHHH----------------------HHHHHHHHHHHHH
Confidence 000 00000 01112333321 2368899999999
Q ss_pred cCCChhhHHHhhcC-eEEecCCCCCCChHHHHHHHHHhhCCCCCCcceEEEcCCCCCCccceEeceeeecc
Q 007563 486 STGRIDLQRKLFCS-IQLIGGVALTGGLIPAVEERVLHAIPSNEAIDMVEVLQSRTNPTYVSWKGGAVLGI 555 (598)
Q Consensus 486 ~~~~~d~r~~L~~n-IvLvGG~S~ipG~~~rL~~eL~~~~p~~~~i~~V~v~~~~~dp~~~aWkGgSIla~ 555 (598)
+| +.+.+.+++.| |+|+||+|++|||.+||++++.. ++.+. .+|..++=.||++++.
T Consensus 270 ~~-~~~~~~~~~~~~IvL~GG~s~ipg~~~~l~~~~~~---------~v~~~---~~p~~ava~Ga~~~~~ 327 (335)
T PRK13930 270 KT-PPELAADIIDRGIVLTGGGALLRGLDKLLSEETGL---------PVHIA---EDPLTCVARGTGKALE 327 (335)
T ss_pred hC-CHHHhhHHHhCCEEEECchhcchhHHHHHHHHHCC---------Cceec---CCHHHHHHHHHHHHHh
Confidence 99 88999999998 99999999999999999999861 12332 3567778888888763
No 19
>TIGR00904 mreB cell shape determining protein, MreB/Mrl family. A close homolog is found in the Archaeon Methanobacterium thermoautotrophicum, and a more distant homolog in Archaeoglobus fulgidus. The family is related to cell division protein FtsA and heat shock protein DnaK.
Probab=99.93 E-value=6.5e-26 Score=239.60 Aligned_cols=274 Identities=18% Similarity=0.168 Sum_probs=197.4
Q ss_pred ceEEccccccCCCC--CCceEecceecCeeeecCCCCccccHHHHHHHHHHHhhhhcCCCCCCCCccceEEecCCCCCcH
Q 007563 173 EFICGEEALRVSPT--EPYCIHRPIRRGHLNISQHYPMQQVLEDLYAIWDWILTEKLHIPRSERNLYSAILVLPESFDNR 250 (598)
Q Consensus 173 ~~~vGeeAl~~~~~--~~~~l~~Pi~~G~~n~~~~~s~~~~~~dle~i~~~~l~~~L~i~~~~~~~y~~VLvip~~~~~~ 250 (598)
-++||++|.+.... .++.+.+||++|.+. +|+.++.+|+|+|.+.+.......+ +++++.|.+.+.
T Consensus 44 ~~~vG~~A~~~~~~~~~~~~~~~pi~~G~i~---------d~~~~~~~~~~~l~~~~~~~~~~~~---~~vitvP~~~~~ 111 (333)
T TIGR00904 44 ILAVGHEAKEMLGKTPGNIVAIRPMKDGVIA---------DFEVTEKMIKYFIKQVHSRKSFFKP---RIVICVPSGITP 111 (333)
T ss_pred EEEEhHHHHHhhhcCCCCEEEEecCCCCEEE---------cHHHHHHHHHHHHHHHhcccccCCC---cEEEEeCCCCCH
Confidence 37899999886322 579999999999998 9999999999999876654322222 477776666666
Q ss_pred HHHHHHHHHHHhcCCCeEeeehhhHHHHhhcCC-----ceEEEEEeCCCcEEEEEe-eCCeeeccCcEEeccccccChHH
Q 007563 251 EIKEMLSIVLRDLRFASAVVHQEGLAAVFGNGL-----STACVVNMGAQVTSVICV-EDGVALPNTEKTLPFGGEVQILD 324 (598)
Q Consensus 251 ~vr~l~ellfe~~~f~~v~~~qesv~a~fgaG~-----~sa~VVDiGa~~TsV~pV-~dG~~l~~s~~~l~~GG~~~~~d 324 (598)
..|+.++.+|+.+|++.+.++.+++||+|++|. .+++|||+|++.|+|++| ++|+++..+ .++||+ +
T Consensus 112 ~~r~~~~~~~~~ag~~~~~li~ep~aaa~~~g~~~~~~~~~lVvDiG~gttdvs~v~~~~~~~~~~---~~lGG~----d 184 (333)
T TIGR00904 112 VERRAVKESALSAGAREVYLIEEPMAAAIGAGLPVEEPTGSMVVDIGGGTTEVAVISLGGIVVSRS---IRVGGD----E 184 (333)
T ss_pred HHHHHHHHHHHHcCCCeEEEecCHHHHHHhcCCcccCCceEEEEEcCCCeEEEEEEEeCCEEecCC---ccchHH----H
Confidence 667778889999999999999999999999998 578999999999999999 888887654 489999 9
Q ss_pred HHHHHHHHHHhcCCCCCcccccccchhhHHHHHHHHHHceeccCCccccccccccccCCCCCCCcceeeeeccCCCCCCC
Q 007563 325 ISRCLLWTQRHHQTWPQIRTDILTKAMDLLMLNRIKESYCEIKEGEIDAVAVVHSYEDGMPPGSHKTRLIALNVPPMGLF 404 (598)
Q Consensus 325 it~~l~~lL~~~~~~p~~~~~~l~~~~d~~l~e~lKe~~c~v~~~~~~~~~~~~~~~~~~p~~~~k~~~~~~~~aP~~lF 404 (598)
+|+.|.+++.... ++ ..+...+|++|+++|++..+.... .. ..+.. ...
T Consensus 185 id~~l~~~l~~~~--------~~--~~~~~~ae~lK~~l~~~~~~~~~~----~~-----------~~~~~-----~~~- 233 (333)
T TIGR00904 185 FDEAIINYIRRTY--------NL--LIGEQTAERIKIEIGSAYPLNDEP----RK-----------MEVRG-----RDL- 233 (333)
T ss_pred HHHHHHHHHHHHh--------cc--cCCHHHHHHHHHHHhccccccccc----cc-----------eeecC-----ccc-
Confidence 9999998876431 11 134567999999999875420000 00 00000 000
Q ss_pred CCcccCCCCCCCCCCCCCCCcccccCCCccccCCCCCCCCCCCCCCCCCCCCCCCCCCccCCCCCcccCCCHHHHHHHHH
Q 007563 405 YPKLLVPDVYPPPPRSWFNDYEDMLEDTWHTDFPRRSDISDNFYPGINVGLPMWESYPVLTTKPKKEEKIGLAEAVTSSI 484 (598)
Q Consensus 405 ~P~~~~~~~~~~p~~~~~~d~~d~~~d~~~~~~~er~~~~E~lfp~~~~~~~~~~~~~~~~~~~~~~~~~~L~~aI~~sI 484 (598)
.+ .++++..+ + +..+.|.+|+. ...+.+.|.+++
T Consensus 234 --------~~-------------~~~~~~~i--~-~~~~~e~i~~~----------------------~~~i~~~i~~~l 267 (333)
T TIGR00904 234 --------VT-------------GLPRTIEI--T-SVEVREALQEP----------------------VNQIVEAVKRTL 267 (333)
T ss_pred --------cC-------------CCCeEEEE--C-HHHHHHHHHHH----------------------HHHHHHHHHHHH
Confidence 00 00000001 0 11223334421 236889999999
Q ss_pred hcCCChhhHHHhhc-CeEEecCCCCCCChHHHHHHHHHhhCCCCCCcceEEEcCCCCCCccceEeceeeecc
Q 007563 485 LSTGRIDLQRKLFC-SIQLIGGVALTGGLIPAVEERVLHAIPSNEAIDMVEVLQSRTNPTYVSWKGGAVLGI 555 (598)
Q Consensus 485 ~~~~~~d~r~~L~~-nIvLvGG~S~ipG~~~rL~~eL~~~~p~~~~i~~V~v~~~~~dp~~~aWkGgSIla~ 555 (598)
..| +.+.+.++++ +|+|+||+|++|||.+||++++.. +|.+. .+|..++=+||++++.
T Consensus 268 ~~~-~~~~~~~l~~~~IvL~GGss~ipgl~e~l~~~~~~---------~v~~~---~~P~~~va~Ga~~~~~ 326 (333)
T TIGR00904 268 EKT-PPELAADIVERGIVLTGGGALLRNLDKLLSKETGL---------PVIVA---DDPLLCVAKGTGKALE 326 (333)
T ss_pred HhC-CchhhhhhccCCEEEECcccchhhHHHHHHHHHCC---------Cceec---CChHHHHHHHHHHHHh
Confidence 999 7889999997 799999999999999999999852 12332 4678888899888753
No 20
>PRK13929 rod-share determining protein MreBH; Provisional
Probab=99.90 E-value=6.1e-23 Score=217.05 Aligned_cols=263 Identities=17% Similarity=0.238 Sum_probs=186.3
Q ss_pred eEEccccccCCCC--CCceEecceecCeeeecCCCCccccHHHHHHHHHHHhhh---hcCCCCCCCCccceEEecCCCCC
Q 007563 174 FICGEEALRVSPT--EPYCIHRPIRRGHLNISQHYPMQQVLEDLYAIWDWILTE---KLHIPRSERNLYSAILVLPESFD 248 (598)
Q Consensus 174 ~~vGeeAl~~~~~--~~~~l~~Pi~~G~~n~~~~~s~~~~~~dle~i~~~~l~~---~L~i~~~~~~~y~~VLvip~~~~ 248 (598)
++||++|.....+ .+..+.+|+++|.+. +|+..+.+|++++.+ .|+..+... .++|+.|.+.
T Consensus 43 ~~vG~~A~~~~~~~p~~~~~~~pi~~G~I~---------d~d~~~~~l~~~~~~~~~~l~~~~~~~----~vvitvP~~~ 109 (335)
T PRK13929 43 LAIGTEAKNMIGKTPGKIVAVRPMKDGVIA---------DYDMTTDLLKQIMKKAGKNIGMTFRKP----NVVVCTPSGS 109 (335)
T ss_pred EEeCHHHHHhhhcCCCcEEEEecCCCCccC---------CHHHHHHHHHHHHHHHHHhcCCCCCCC----eEEEEcCCCC
Confidence 6899999876422 468999999999988 999999999999973 566655433 4667666654
Q ss_pred cHHHHH-HHHHHHHhcCCCeEeeehhhHHHHhhcCC-----ceEEEEEeCCCcEEEEEe-eCCeeeccCcEEeccccccC
Q 007563 249 NREIKE-MLSIVLRDLRFASAVVHQEGLAAVFGNGL-----STACVVNMGAQVTSVICV-EDGVALPNTEKTLPFGGEVQ 321 (598)
Q Consensus 249 ~~~vr~-l~ellfe~~~f~~v~~~qesv~a~fgaG~-----~sa~VVDiGa~~TsV~pV-~dG~~l~~s~~~l~~GG~~~ 321 (598)
....|+ +.+ +++.+|++.+.++.+++||++++|. .+++|||+|++.|+|++| ++|.+...+ +++||+
T Consensus 110 ~~~~R~~l~~-a~~~ag~~~~~li~ep~Aaa~~~g~~~~~~~~~lvvDiG~gtt~v~vi~~~~~~~~~~---~~~GG~-- 183 (335)
T PRK13929 110 TAVERRAISD-AVKNCGAKNVHLIEEPVAAAIGADLPVDEPVANVVVDIGGGTTEVAIISFGGVVSCHS---IRIGGD-- 183 (335)
T ss_pred CHHHHHHHHH-HHHHcCCCeeEeecCHHHHHHhcCCCcCCCceEEEEEeCCCeEEEEEEEeCCEEEecC---cCCHHH--
Confidence 444455 666 9999999999999999999999984 478999999999999999 666665443 589999
Q ss_pred hHHHHHHHHHHHHhcCCCCCcccccccchhhHHHHHHHHHHceeccCCccccccccc--cccCCCCCCCcceeeeeccCC
Q 007563 322 ILDISRCLLWTQRHHQTWPQIRTDILTKAMDLLMLNRIKESYCEIKEGEIDAVAVVH--SYEDGMPPGSHKTRLIALNVP 399 (598)
Q Consensus 322 ~~dit~~l~~lL~~~~~~p~~~~~~l~~~~d~~l~e~lKe~~c~v~~~~~~~~~~~~--~~~~~~p~~~~k~~~~~~~~a 399 (598)
++|+.|.+++.... ++. .+...+|++|+++|++..+......... ....+.|
T Consensus 184 --~id~~l~~~l~~~~--------~~~--~~~~~AE~iK~~l~~~~~~~~~~~~~v~g~~~~~~~p-------------- 237 (335)
T PRK13929 184 --QLDEDIVSFVRKKY--------NLL--IGERTAEQVKMEIGYALIEHEPETMEVRGRDLVTGLP-------------- 237 (335)
T ss_pred --HHHHHHHHHHHHHh--------CcC--cCHHHHHHHHHHHcCCCCCCCCceEEEeCCccCCCCC--------------
Confidence 99999998876432 121 2446899999999987532100000000 0000000
Q ss_pred CCCCCCCcccCCCCCCCCCCCCCCCcccccCCCccccCC-CCCC--CCCCCCCCCCCCCCCCCCCCccCCCCCcccCCCH
Q 007563 400 PMGLFYPKLLVPDVYPPPPRSWFNDYEDMLEDTWHTDFP-RRSD--ISDNFYPGINVGLPMWESYPVLTTKPKKEEKIGL 476 (598)
Q Consensus 400 P~~lF~P~~~~~~~~~~p~~~~~~d~~d~~~d~~~~~~~-er~~--~~E~lfp~~~~~~~~~~~~~~~~~~~~~~~~~~L 476 (598)
. .+..+ +++. +.|. ...+
T Consensus 238 -------~--------------------------~i~i~~~~~~~~i~~~--------------------------l~~i 258 (335)
T PRK13929 238 -------K--------------------------TITLESKEIQGAMRES--------------------------LLHI 258 (335)
T ss_pred -------e--------------------------EEEEcHHHHHHHHHHH--------------------------HHHH
Confidence 0 00000 0000 1111 1247
Q ss_pred HHHHHHHHhcCCChhhHHHhhc-CeEEecCCCCCCChHHHHHHHHHhhCCCCCCcceEEEcCCCCCCccceEeceeee
Q 007563 477 AEAVTSSILSTGRIDLQRKLFC-SIQLIGGVALTGGLIPAVEERVLHAIPSNEAIDMVEVLQSRTNPTYVSWKGGAVL 553 (598)
Q Consensus 477 ~~aI~~sI~~~~~~d~r~~L~~-nIvLvGG~S~ipG~~~rL~~eL~~~~p~~~~i~~V~v~~~~~dp~~~aWkGgSIl 553 (598)
.++|.+++.+| +.+++.++++ +|+||||+|++|||.++|++++.. | +.+. .+|..++=+|+...
T Consensus 259 ~~~i~~~L~~~-~~~l~~~~~~~gIvLtGG~s~lpgl~e~l~~~~~~--~-------v~~~---~~P~~~Va~Ga~~~ 323 (335)
T PRK13929 259 LEAIRATLEDC-PPELSGDIVDRGVILTGGGALLNGIKEWLSEEIVV--P-------VHVA---ANPLESVAIGTGRS 323 (335)
T ss_pred HHHHHHHHHhC-CcccchhhcCCCEEEEchhhhhhhHHHHHHHHHCC--C-------ceeC---CCHHHHHHHHHHHH
Confidence 89999999999 8899999998 699999999999999999999962 2 2332 46777888886544
No 21
>PRK13928 rod shape-determining protein Mbl; Provisional
Probab=99.88 E-value=3.3e-22 Score=211.63 Aligned_cols=272 Identities=19% Similarity=0.204 Sum_probs=191.4
Q ss_pred eEEccccccCCCC--CCceEecceecCeeeecCCCCccccHHHHHHHHHHHhhhhcCCC-CCCCCccceEEecCCCCCcH
Q 007563 174 FICGEEALRVSPT--EPYCIHRPIRRGHLNISQHYPMQQVLEDLYAIWDWILTEKLHIP-RSERNLYSAILVLPESFDNR 250 (598)
Q Consensus 174 ~~vGeeAl~~~~~--~~~~l~~Pi~~G~~n~~~~~s~~~~~~dle~i~~~~l~~~L~i~-~~~~~~y~~VLvip~~~~~~ 250 (598)
+++|++|.+.... .++.+.+|+++|.+. +|+..+.+|+|++. ++... ..+.+ .++++.|.+...
T Consensus 42 ~~vG~~A~~~~~~~p~~~~~~~pi~~G~i~---------d~~~~~~~l~~~~~-~~~~~~~~~~p---~~vitvP~~~~~ 108 (336)
T PRK13928 42 LAVGEEARRMVGRTPGNIVAIRPLRDGVIA---------DYDVTEKMLKYFIN-KACGKRFFSKP---RIMICIPTGITS 108 (336)
T ss_pred EEecHHHHHhhhcCCCCEEEEccCCCCeEe---------cHHHHHHHHHHHHH-HHhccCCCCCC---eEEEEeCCCCCH
Confidence 5899999887532 578899999999998 99999999999994 44332 23332 366666665555
Q ss_pred HHHHHHHHHHHhcCCCeEeeehhhHHHHhhcCC-----ceEEEEEeCCCcEEEEEeeCCeeeccCcEEeccccccChHHH
Q 007563 251 EIKEMLSIVLRDLRFASAVVHQEGLAAVFGNGL-----STACVVNMGAQVTSVICVEDGVALPNTEKTLPFGGEVQILDI 325 (598)
Q Consensus 251 ~vr~l~ellfe~~~f~~v~~~qesv~a~fgaG~-----~sa~VVDiGa~~TsV~pV~dG~~l~~s~~~l~~GG~~~~~di 325 (598)
..|++++.+++.+|++.+.++.+++||++++|. ..++|||+|+++|+|++|.+|.++... .+++||+ ++
T Consensus 109 ~~r~~~~~a~~~ag~~~~~li~ep~Aaa~~~g~~~~~~~~~lVvDiGggttdvsvv~~g~~~~~~--~~~lGG~----di 182 (336)
T PRK13928 109 VEKRAVREAAEQAGAKKVYLIEEPLAAAIGAGLDISQPSGNMVVDIGGGTTDIAVLSLGGIVTSS--SIKVAGD----KF 182 (336)
T ss_pred HHHHHHHHHHHHcCCCceEecccHHHHHHHcCCcccCCCeEEEEEeCCCeEEEEEEEeCCEEEeC--CcCCHHH----HH
Confidence 556799999999999999999999999999998 568999999999999999988766443 6799999 99
Q ss_pred HHHHHHHHHhcCCCCCcccccccchhhHHHHHHHHHHceeccCCccccccccccccCCCCCCCcceeeeeccCCCCCCCC
Q 007563 326 SRCLLWTQRHHQTWPQIRTDILTKAMDLLMLNRIKESYCEIKEGEIDAVAVVHSYEDGMPPGSHKTRLIALNVPPMGLFY 405 (598)
Q Consensus 326 t~~l~~lL~~~~~~p~~~~~~l~~~~d~~l~e~lKe~~c~v~~~~~~~~~~~~~~~~~~p~~~~k~~~~~~~~aP~~lF~ 405 (598)
|+.+.+.+.... .+ ..+...+|++|+++|.+..+.... .......... .+
T Consensus 183 d~~i~~~l~~~~--------~~--~~~~~~ae~lK~~~~~~~~~~~~~----------------~~~v~g~~~~-~~--- 232 (336)
T PRK13928 183 DEAIIRYIRKKY--------KL--LIGERTAEEIKIKIGTAFPGAREE----------------EMEIRGRDLV-TG--- 232 (336)
T ss_pred HHHHHHHHHHHh--------ch--hcCHHHHHHHHHHhcccccccCCc----------------EEEEeccccc-CC---
Confidence 999998876431 11 123467999999998764321000 0000000000 00
Q ss_pred CcccCCCCCCCCCCCCCCCcccccCCCccccCCCCCCCCCCCCCCCCCCCCCCCCCCccCCCCCcccCCCHHHHHHHHHh
Q 007563 406 PKLLVPDVYPPPPRSWFNDYEDMLEDTWHTDFPRRSDISDNFYPGINVGLPMWESYPVLTTKPKKEEKIGLAEAVTSSIL 485 (598)
Q Consensus 406 P~~~~~~~~~~p~~~~~~d~~d~~~d~~~~~~~er~~~~E~lfp~~~~~~~~~~~~~~~~~~~~~~~~~~L~~aI~~sI~ 485 (598)
.+....+ + +....|.+++ -...+.+.|.+++.
T Consensus 233 -----------------------~~~~~~i--~-~~~~~eii~~----------------------~~~~i~~~i~~~l~ 264 (336)
T PRK13928 233 -----------------------LPKTITV--T-SEEIREALKE----------------------PVSAIVQAVKSVLE 264 (336)
T ss_pred -----------------------CceEEEE--C-HHHHHHHHHH----------------------HHHHHHHHHHHHHH
Confidence 0000000 0 0011112211 11357888999999
Q ss_pred cCCChhhHHHhhc-CeEEecCCCCCCChHHHHHHHHHhhCCCCCCcceEEEcCCCCCCccceEeceeeecc
Q 007563 486 STGRIDLQRKLFC-SIQLIGGVALTGGLIPAVEERVLHAIPSNEAIDMVEVLQSRTNPTYVSWKGGAVLGI 555 (598)
Q Consensus 486 ~~~~~d~r~~L~~-nIvLvGG~S~ipG~~~rL~~eL~~~~p~~~~i~~V~v~~~~~dp~~~aWkGgSIla~ 555 (598)
.+ +.+++.+++. +|+||||+|++||+.++|++++.. +|.+. .+|..++=+||++++.
T Consensus 265 ~~-~~~~~~~~i~~~IvL~GG~s~ipgi~e~l~~~~~~---------~v~~~---~~P~~ava~Gaa~~~~ 322 (336)
T PRK13928 265 RT-PPELSADIIDRGIIMTGGGALLHGLDKLLAEETKV---------PVYIA---EDPISCVALGTGKMLE 322 (336)
T ss_pred hC-CccccHhhcCCCEEEECcccchhhHHHHHHHHHCC---------Cceec---CCHHHHHHHHHHHHHh
Confidence 98 7788888998 799999999999999999999862 22332 3688999999888763
No 22
>PF06723 MreB_Mbl: MreB/Mbl protein; InterPro: IPR004753 Bacterial cell shape varies greatly between species, and characteristic morphologies are used for identification purposes. In addition to individual cell shape, the way in which groups of cells are arranged is also typical of some bacterial species, especially Gram-positive coccoids. For many years, it was believed that micro-organisms with other than spheroidal cell shapes maintained morphology by means of their external cell walls. Recently, however, studies of the Gram-positive rod Bacillus subtilis have revealed two related genes that are essential for the integrity of cell morphogenesis []. Termed mreB and mbl, the gene products localise close to the cell surface, forming filamentous helical structures. Many homologues have been found in diverse bacterial groups, suggesting a common ancestor []. The crystal structure of MreB from Thermotoga maritima has been resolved using X-ray crystallography []. It consists of 19 beta-strands and 15 alpha- helices, and shows remarkable structural similarity to eukaryotic actin. MreB crystals also contain proto-filaments, with individual proteins assembling into polymers like F-actin, in the same orientation. It is hypothesised therefore, that MreB was the forerunner of actin in early eukaryotes [].; GO: 0000902 cell morphogenesis; PDB: 1JCF_A 1JCE_A 2WUS_A 1JCG_A.
Probab=99.85 E-value=1.8e-20 Score=195.64 Aligned_cols=269 Identities=19% Similarity=0.289 Sum_probs=178.5
Q ss_pred eEEccccccCCCC--CCceEecceecCeeeecCCCCccccHHHHHHHHHHHhhhhcCCCCCCCCccceEEe-cCCCCCcH
Q 007563 174 FICGEEALRVSPT--EPYCIHRPIRRGHLNISQHYPMQQVLEDLYAIWDWILTEKLHIPRSERNLYSAILV-LPESFDNR 250 (598)
Q Consensus 174 ~~vGeeAl~~~~~--~~~~l~~Pi~~G~~n~~~~~s~~~~~~dle~i~~~~l~~~L~i~~~~~~~y~~VLv-ip~~~~~~ 250 (598)
..+|++|..+-.+ .++.+.||+++|.+. |++..+.++++.+++.++-..-..+ .|++ +|.-.+..
T Consensus 40 ~avG~~A~~m~gktp~~i~~~~Pl~~GvI~---------D~~~~~~~l~~~l~k~~~~~~~~~p---~vvi~vP~~~T~v 107 (326)
T PF06723_consen 40 LAVGDEAKAMLGKTPDNIEVVRPLKDGVIA---------DYEAAEEMLRYFLKKALGRRSFFRP---RVVICVPSGITEV 107 (326)
T ss_dssp EEESHHHHTTTTS-GTTEEEE-SEETTEES---------SHHHHHHHHHHHHHHHHTSS-SS-----EEEEEE-SS--HH
T ss_pred EEEhHHHHHHhhcCCCccEEEccccCCccc---------CHHHHHHHHHHHHHHhccCCCCCCC---eEEEEeCCCCCHH
Confidence 5689999887543 579999999999998 9999999999999876653221222 2444 55555555
Q ss_pred HHHHHHHHHHHhcCCCeEeeehhhHHHHhhcCCc-----eEEEEEeCCCcEEEEEeeCCeeeccCcEEeccccccChHHH
Q 007563 251 EIKEMLSIVLRDLRFASAVVHQEGLAAVFGNGLS-----TACVVNMGAQVTSVICVEDGVALPNTEKTLPFGGEVQILDI 325 (598)
Q Consensus 251 ~vr~l~ellfe~~~f~~v~~~qesv~a~fgaG~~-----sa~VVDiGa~~TsV~pV~dG~~l~~s~~~l~~GG~~~~~di 325 (598)
+.|.+.+.+ ...|+.+|+++.+++||++|+|.. ..+|||||+++|.|+-+--|-++. ...+++||+ ++
T Consensus 108 errA~~~a~-~~aGa~~V~li~ep~AaAiGaGl~i~~~~g~miVDIG~GtTdiavislggiv~--s~si~~gG~----~~ 180 (326)
T PF06723_consen 108 ERRALIDAA-RQAGARKVYLIEEPIAAAIGAGLDIFEPRGSMIVDIGGGTTDIAVISLGGIVA--SRSIRIGGD----DI 180 (326)
T ss_dssp HHHHHHHHH-HHTT-SEEEEEEHHHHHHHHTT--TTSSS-EEEEEE-SS-EEEEEEETTEEEE--EEEES-SHH----HH
T ss_pred HHHHHHHHH-HHcCCCEEEEecchHHHHhcCCCCCCCCCceEEEEECCCeEEEEEEECCCEEE--EEEEEecCc----ch
Confidence 544466655 579999999999999999999974 479999999999999998887763 467899999 99
Q ss_pred HHHHHHHHHhcCCCCCcccccccchhhHHHHHHHHHHceeccCCcccccc--ccccccCCCCCCCcceeeeeccCCCCCC
Q 007563 326 SRCLLWTQRHHQTWPQIRTDILTKAMDLLMLNRIKESYCEIKEGEIDAVA--VVHSYEDGMPPGSHKTRLIALNVPPMGL 403 (598)
Q Consensus 326 t~~l~~lL~~~~~~p~~~~~~l~~~~d~~l~e~lKe~~c~v~~~~~~~~~--~~~~~~~~~p~~~~k~~~~~~~~aP~~l 403 (598)
++.+.+.++.+. ++ ......+|+||++++++...+-.... ...+...|+|. .......
T Consensus 181 DeaI~~~ir~~y--------~l--~Ig~~tAE~iK~~~g~~~~~~~~~~~~v~Grd~~tGlP~---~~~i~~~------- 240 (326)
T PF06723_consen 181 DEAIIRYIREKY--------NL--LIGERTAEKIKIEIGSASPPEEEESMEVRGRDLITGLPK---SIEITSS------- 240 (326)
T ss_dssp HHHHHHHHHHHH--------SE--E--HHHHHHHHHHH-BSS--HHHHEEEEEEEETTTTCEE---EEEEEHH-------
T ss_pred hHHHHHHHHHhh--------Cc--ccCHHHHHHHHHhcceeeccCCCceEEEECccccCCCcE---EEEEcHH-------
Confidence 999999887653 22 35678999999999887643111100 01111222221 0110000
Q ss_pred CCCcccCCCCCCCCCCCCCCCcccccCCCccccCCCCCCCCCCCCCCCCCCCCCCCCCCccCCCCCcccCCCHHHHHHHH
Q 007563 404 FYPKLLVPDVYPPPPRSWFNDYEDMLEDTWHTDFPRRSDISDNFYPGINVGLPMWESYPVLTTKPKKEEKIGLAEAVTSS 483 (598)
Q Consensus 404 F~P~~~~~~~~~~p~~~~~~d~~d~~~d~~~~~~~er~~~~E~lfp~~~~~~~~~~~~~~~~~~~~~~~~~~L~~aI~~s 483 (598)
.+.+.+- .....+.++|.+.
T Consensus 241 --------------------------------------ev~~ai~----------------------~~~~~I~~~i~~~ 260 (326)
T PF06723_consen 241 --------------------------------------EVREAIE----------------------PPVDQIVEAIKEV 260 (326)
T ss_dssp --------------------------------------HHHHHHH----------------------HHHHHHHHHHHHH
T ss_pred --------------------------------------HHHHHHH----------------------HHHHHHHHHHHHH
Confidence 0000000 0123688999999
Q ss_pred HhcCCChhhHHHhhcC-eEEecCCCCCCChHHHHHHHHHhhCCCCCCcceEEEcCCCCCCccceEeceeeec
Q 007563 484 ILSTGRIDLQRKLFCS-IQLIGGVALTGGLIPAVEERVLHAIPSNEAIDMVEVLQSRTNPTYVSWKGGAVLG 554 (598)
Q Consensus 484 I~~~~~~d~r~~L~~n-IvLvGG~S~ipG~~~rL~~eL~~~~p~~~~i~~V~v~~~~~dp~~~aWkGgSIla 554 (598)
++++ |+++..+++.| |+|+||+|+++||+++|++++. + +|.+. .+|..++-+|+..+.
T Consensus 261 Le~~-pPel~~DI~~~GI~LtGGga~l~Gl~~~i~~~~~--------~-pV~va---~~P~~~va~G~~~~l 319 (326)
T PF06723_consen 261 LEKT-PPELAADILENGIVLTGGGALLRGLDEYISEETG--------V-PVRVA---DDPLTAVARGAGKLL 319 (326)
T ss_dssp HHTS--HHHHHHHHHH-EEEESGGGGSBTHHHHHHHHHS--------S--EEE----SSTTTHHHHHHHHTT
T ss_pred HHhC-CHHHHHHHHHCCEEEEChhhhhccHHHHHHHHHC--------C-CEEEc---CCHHHHHHHHHHHHH
Confidence 9999 99999998876 9999999999999999999995 2 45665 478888888865443
No 23
>COG1077 MreB Actin-like ATPase involved in cell morphogenesis [Cell division and chromosome partitioning]
Probab=99.57 E-value=2.9e-14 Score=144.71 Aligned_cols=268 Identities=21% Similarity=0.260 Sum_probs=179.9
Q ss_pred ceEEccccccCCCC--CCceEecceecCeeeecCCCCccccHHHHHHHHHHHhhhhcCCCCCCCCccce-EEec-CCCCC
Q 007563 173 EFICGEEALRVSPT--EPYCIHRPIRRGHLNISQHYPMQQVLEDLYAIWDWILTEKLHIPRSERNLYSA-ILVL-PESFD 248 (598)
Q Consensus 173 ~~~vGeeAl~~~~~--~~~~l~~Pi~~G~~n~~~~~s~~~~~~dle~i~~~~l~~~L~i~~~~~~~y~~-VLvi-p~~~~ 248 (598)
-..||+||..+-.+ .+....+|+++|.+- +++..+.++.|.+++..+=... +. +| ++++ |.--+
T Consensus 46 v~aVG~eAK~MlGrTP~ni~aiRPmkdGVIA---------d~~~te~ml~~fik~~~~~~~~-~~--~prI~i~vP~g~T 113 (342)
T COG1077 46 VLAVGEEAKQMLGRTPGNIVAIRPMKDGVIA---------DFEVTELMLKYFIKKVHKNGSS-FP--KPRIVICVPSGIT 113 (342)
T ss_pred EEEehHHHHHHhccCCCCceEEeecCCcEee---------cHHHHHHHHHHHHHHhccCCCC-CC--CCcEEEEecCCcc
Confidence 46799999887533 579999999999998 9999999999998643321111 11 12 3443 33334
Q ss_pred cHHHHHHHHHHHHhcCCCeEeeehhhHHHHhhcCCc----e-EEEEEeCCCcEEEEEeeCC-eeeccCcEEeccccccCh
Q 007563 249 NREIKEMLSIVLRDLRFASAVVHQEGLAAVFGNGLS----T-ACVVNMGAQVTSVICVEDG-VALPNTEKTLPFGGEVQI 322 (598)
Q Consensus 249 ~~~vr~l~ellfe~~~f~~v~~~qesv~a~fgaG~~----s-a~VVDiGa~~TsV~pV~dG-~~l~~s~~~l~~GG~~~~ 322 (598)
..+.| .+.-..++-|...|+++.|+++|++|+|+. + +.|||||..+|.|+-+..| ++.. ....+|||
T Consensus 114 ~VErr-Ai~ea~~~aGa~~V~lieEp~aAAIGaglpi~ep~G~mvvDIGgGTTevaVISlggiv~~---~Sirv~GD--- 186 (342)
T COG1077 114 DVERR-AIKEAAESAGAREVYLIEEPMAAAIGAGLPIMEPTGSMVVDIGGGTTEVAVISLGGIVSS---SSVRVGGD--- 186 (342)
T ss_pred HHHHH-HHHHHHHhccCceEEEeccHHHHHhcCCCcccCCCCCEEEEeCCCceeEEEEEecCEEEE---eeEEEecc---
Confidence 44433 344445678999999999999999999985 4 7999999999999998555 5543 44689999
Q ss_pred HHHHHHHHHHHHhcCCCCCcccccccchhhHHHHHHHHHHceeccCCcccc----ccccccccCCCCCCCcceeeeeccC
Q 007563 323 LDISRCLLWTQRHHQTWPQIRTDILTKAMDLLMLNRIKESYCEIKEGEIDA----VAVVHSYEDGMPPGSHKTRLIALNV 398 (598)
Q Consensus 323 ~dit~~l~~lL~~~~~~p~~~~~~l~~~~d~~l~e~lKe~~c~v~~~~~~~----~~~~~~~~~~~p~~~~k~~~~~~~~ 398 (598)
.+++.+...++++. ++ ......+|+||.+..++...+... ....++...+.|
T Consensus 187 -~~De~Ii~yvr~~~--------nl--~IGe~taE~iK~eiG~a~~~~~~~~~~~eV~Grdl~~GlP------------- 242 (342)
T COG1077 187 -KMDEAIIVYVRKKY--------NL--LIGERTAEKIKIEIGSAYPEEEDEELEMEVRGRDLVTGLP------------- 242 (342)
T ss_pred -hhhHHHHHHHHHHh--------Ce--eecHHHHHHHHHHhcccccccCCccceeeEEeeecccCCC-------------
Confidence 99999999887652 22 344567999999887665421100 000011111111
Q ss_pred CCCCCCCCcccCCCCCCCCCCCCCCCcccccCCCccccCCCCCCCCCCCCCCCCCCCCCCCCCCccCCCCCcccCCCHHH
Q 007563 399 PPMGLFYPKLLVPDVYPPPPRSWFNDYEDMLEDTWHTDFPRRSDISDNFYPGINVGLPMWESYPVLTTKPKKEEKIGLAE 478 (598)
Q Consensus 399 aP~~lF~P~~~~~~~~~~p~~~~~~d~~d~~~d~~~~~~~er~~~~E~lfp~~~~~~~~~~~~~~~~~~~~~~~~~~L~~ 478 (598)
..+ .+ . ...+.|.+- .....|.+
T Consensus 243 --------k~i------------------------~i--~-s~ev~eal~----------------------~~v~~Ive 265 (342)
T COG1077 243 --------KTI------------------------TI--N-SEEIAEALE----------------------EPLNGIVE 265 (342)
T ss_pred --------eeE------------------------EE--c-HHHHHHHHH----------------------HHHHHHHH
Confidence 000 00 0 000001110 11246889
Q ss_pred HHHHHHhcCCChhhHHHhhcC-eEEecCCCCCCChHHHHHHHHHhhCCCCCCcceEEEcCCCCCCccceEeceeee
Q 007563 479 AVTSSILSTGRIDLQRKLFCS-IQLIGGVALTGGLIPAVEERVLHAIPSNEAIDMVEVLQSRTNPTYVSWKGGAVL 553 (598)
Q Consensus 479 aI~~sI~~~~~~d~r~~L~~n-IvLvGG~S~ipG~~~rL~~eL~~~~p~~~~i~~V~v~~~~~dp~~~aWkGgSIl 553 (598)
+|...+.+| |+++-.+.+.+ |+++||+|++.||+++|.++..- .|.+. .||-.++=+|+...
T Consensus 266 air~~Le~t-pPeL~~DI~ergivltGGGalLrglD~~i~~et~~---------pv~ia---~~pL~~Va~G~G~~ 328 (342)
T COG1077 266 AIRLVLEKT-PPELAADIVERGIVLTGGGALLRGLDRLLSEETGV---------PVIIA---DDPLTCVAKGTGKA 328 (342)
T ss_pred HHHHHHhhC-CchhcccHhhCceEEecchHHhcCchHhHHhccCC---------eEEEC---CChHHHHHhccchh
Confidence 999999999 78999999999 99999999999999999988752 34554 35667777775443
No 24
>TIGR02529 EutJ ethanolamine utilization protein EutJ family protein.
Probab=99.38 E-value=1.6e-11 Score=123.99 Aligned_cols=135 Identities=18% Similarity=0.173 Sum_probs=104.9
Q ss_pred ecceecCeeeecCCCCccccHHHHHHHHHHHhh---hhcCCCCCCCCccceEEecCCCCCcHHHHHHHHHHHHhcCCCeE
Q 007563 192 HRPIRRGHLNISQHYPMQQVLEDLYAIWDWILT---EKLHIPRSERNLYSAILVLPESFDNREIKEMLSIVLRDLRFASA 268 (598)
Q Consensus 192 ~~Pi~~G~~n~~~~~s~~~~~~dle~i~~~~l~---~~L~i~~~~~~~y~~VLvip~~~~~~~vr~l~ellfe~~~f~~v 268 (598)
..|+++|.+. |++..+.+++++.. ..++.+.. . +|+-+|..|+..+. +.+.-+++..|+.-+
T Consensus 28 ~~~~~~g~I~---------d~~~~~~~l~~l~~~a~~~~g~~~~-~----vvisVP~~~~~~~r-~a~~~a~~~aGl~~~ 92 (239)
T TIGR02529 28 ADVVRDGIVV---------DFLGAVEIVRRLKDTLEQKLGIELT-H----AATAIPPGTIEGDP-KVIVNVIESAGIEVL 92 (239)
T ss_pred cccccCCeEE---------EhHHHHHHHHHHHHHHHHHhCCCcC-c----EEEEECCCCCcccH-HHHHHHHHHcCCceE
Confidence 4589999999 99999999999985 23443221 1 57777777776553 334456677899999
Q ss_pred eeehhhHHHHhhcCCceEEEEEeCCCcEEEEEeeCCeeeccCcEEeccccccChHHHHHHHHHHHHhcCCCCCccccccc
Q 007563 269 VVHQEGLAAVFGNGLSTACVVNMGAQVTSVICVEDGVALPNTEKTLPFGGEVQILDISRCLLWTQRHHQTWPQIRTDILT 348 (598)
Q Consensus 269 ~~~qesv~a~fgaG~~sa~VVDiGa~~TsV~pV~dG~~l~~s~~~l~~GG~~~~~dit~~l~~lL~~~~~~p~~~~~~l~ 348 (598)
.++.+++|++.++|....+|||+|++.|.++-+.+|.++. ...+++||+ ++|+.+.+.+.
T Consensus 93 ~li~ep~Aaa~~~~~~~~~vvDiGggtt~i~i~~~G~i~~--~~~~~~GG~----~it~~Ia~~~~-------------- 152 (239)
T TIGR02529 93 HVLDEPTAAAAVLQIKNGAVVDVGGGTTGISILKKGKVIY--SADEPTGGT----HMSLVLAGAYG-------------- 152 (239)
T ss_pred EEeehHHHHHHHhcCCCcEEEEeCCCcEEEEEEECCeEEE--EEeeecchH----HHHHHHHHHhC--------------
Confidence 9999999999999888889999999999999999998774 346789999 99998764431
Q ss_pred chhhHHHHHHHHHHc
Q 007563 349 KAMDLLMLNRIKESY 363 (598)
Q Consensus 349 ~~~d~~l~e~lKe~~ 363 (598)
.++..+|++|..+
T Consensus 153 --i~~~~AE~~K~~~ 165 (239)
T TIGR02529 153 --ISFEEAEEYKRGH 165 (239)
T ss_pred --CCHHHHHHHHHhc
Confidence 2457789998753
No 25
>PRK15080 ethanolamine utilization protein EutJ; Provisional
Probab=99.17 E-value=6.7e-10 Score=114.03 Aligned_cols=138 Identities=19% Similarity=0.213 Sum_probs=103.8
Q ss_pred CceEecceecCeeeecCCCCccccHHHHHHHHHHHhh---hhcCCCCCCCCccceEEecCCCCCcHHHHHHHHHHHHhcC
Q 007563 188 PYCIHRPIRRGHLNISQHYPMQQVLEDLYAIWDWILT---EKLHIPRSERNLYSAILVLPESFDNREIKEMLSIVLRDLR 264 (598)
Q Consensus 188 ~~~l~~Pi~~G~~n~~~~~s~~~~~~dle~i~~~~l~---~~L~i~~~~~~~y~~VLvip~~~~~~~vr~l~ellfe~~~ 264 (598)
......++++|.+. +++.....+++++. +.++++.. . +++-+|+.++....+.+. -+.+..|
T Consensus 51 ~~~~~~~vr~G~i~---------di~~a~~~i~~~~~~ae~~~g~~i~-~----v~~~vp~~~~~~~~~~~~-~~~~~aG 115 (267)
T PRK15080 51 ALEWADVVRDGIVV---------DFIGAVTIVRRLKATLEEKLGRELT-H----AATAIPPGTSEGDPRAII-NVVESAG 115 (267)
T ss_pred EeccccccCCCEEe---------eHHHHHHHHHHHHHHHHHHhCCCcC-e----EEEEeCCCCCchhHHHHH-HHHHHcC
Confidence 34557789999988 78888888887775 24455422 1 445567777544433344 6778899
Q ss_pred CCeEeeehhhHHHHhhcCCceEEEEEeCCCcEEEEEeeCCeeeccCcEEeccccccChHHHHHHHHHHHHhcCCCCCccc
Q 007563 265 FASAVVHQEGLAAVFGNGLSTACVVNMGAQVTSVICVEDGVALPNTEKTLPFGGEVQILDISRCLLWTQRHHQTWPQIRT 344 (598)
Q Consensus 265 f~~v~~~qesv~a~fgaG~~sa~VVDiGa~~TsV~pV~dG~~l~~s~~~l~~GG~~~~~dit~~l~~lL~~~~~~p~~~~ 344 (598)
+.-..++.++.|++.+.+...++|||||++.|+++-+.+|.++.. ..+++||+ ++|+.+.+.+.
T Consensus 116 l~~~~ii~e~~A~a~~~~~~~~~vvDIGggtt~i~v~~~g~~~~~--~~~~~GG~----~it~~Ia~~l~---------- 179 (267)
T PRK15080 116 LEVTHVLDEPTAAAAVLGIDNGAVVDIGGGTTGISILKDGKVVYS--ADEPTGGT----HMSLVLAGAYG---------- 179 (267)
T ss_pred CceEEEechHHHHHHHhCCCCcEEEEeCCCcEEEEEEECCeEEEE--ecccCchH----HHHHHHHHHhC----------
Confidence 999999999999999888878999999999999999999987643 46799999 99998875542
Q ss_pred ccccchhhHHHHHHHHHH
Q 007563 345 DILTKAMDLLMLNRIKES 362 (598)
Q Consensus 345 ~~l~~~~d~~l~e~lKe~ 362 (598)
.++..+|++|..
T Consensus 180 ------i~~~eAE~lK~~ 191 (267)
T PRK15080 180 ------ISFEEAEQYKRD 191 (267)
T ss_pred ------CCHHHHHHHHhc
Confidence 235668888865
No 26
>CHL00094 dnaK heat shock protein 70
Probab=98.74 E-value=5.3e-08 Score=111.51 Aligned_cols=91 Identities=21% Similarity=0.283 Sum_probs=69.3
Q ss_pred eEEecCCCCCcHHHHHHHHHHHHhcCCCeEeeehhhHHHHhhcCCc-----eEEEEEeCCCcEEEEEeeCC--ee-eccC
Q 007563 239 AILVLPESFDNREIKEMLSIVLRDLRFASAVVHQEGLAAVFGNGLS-----TACVVNMGAQVTSVICVEDG--VA-LPNT 310 (598)
Q Consensus 239 ~VLvip~~~~~~~vr~l~ellfe~~~f~~v~~~qesv~a~fgaG~~-----sa~VVDiGa~~TsV~pV~dG--~~-l~~s 310 (598)
+|+-+|..|+..+ |+.+.-+.+..|+.-+.++.++.||++++|.. ..+|+|+|++++.|+-+.-| .. +..+
T Consensus 138 ~VItVPa~f~~~q-R~a~~~Aa~~AGl~v~~li~EptAAAlay~~~~~~~~~vlV~DlGgGT~DvSv~~~~~~~~~vla~ 216 (621)
T CHL00094 138 AVITVPAYFNDSQ-RQATKDAGKIAGLEVLRIINEPTAASLAYGLDKKNNETILVFDLGGGTFDVSILEVGDGVFEVLST 216 (621)
T ss_pred EEEEECCCCCHHH-HHHHHHHHHHcCCceEEEeccHHHHHHHhccccCCCCEEEEEEcCCCeEEEEEEEEcCCEEEEEEE
Confidence 6788888887554 45555566788999999999999999998763 57999999999999888533 21 1222
Q ss_pred cEEeccccccChHHHHHHHHHHHH
Q 007563 311 EKTLPFGGEVQILDISRCLLWTQR 334 (598)
Q Consensus 311 ~~~l~~GG~~~~~dit~~l~~lL~ 334 (598)
....++||+ |+++.|.+.+.
T Consensus 217 ~gd~~lGG~----d~D~~l~~~~~ 236 (621)
T CHL00094 217 SGDTHLGGD----DFDKKIVNWLI 236 (621)
T ss_pred ecCCCcChH----HHHHHHHHHHH
Confidence 334689999 99999886553
No 27
>PRK09472 ftsA cell division protein FtsA; Reviewed
Probab=98.71 E-value=6.6e-08 Score=105.67 Aligned_cols=94 Identities=16% Similarity=0.227 Sum_probs=75.7
Q ss_pred cHHHHHHHHHHHHhcCCCeEeeehhhHHHHhhcCCc-----eEEEEEeCCCcEEEEEeeCCeeeccCcEEeccccccChH
Q 007563 249 NREIKEMLSIVLRDLRFASAVVHQEGLAAVFGNGLS-----TACVVNMGAQVTSVICVEDGVALPNTEKTLPFGGEVQIL 323 (598)
Q Consensus 249 ~~~vr~l~ellfe~~~f~~v~~~qesv~a~fgaG~~-----sa~VVDiGa~~TsV~pV~dG~~l~~s~~~l~~GG~~~~~ 323 (598)
+..++.+.+ +++..|+.-..++.+++|++++++.. ..||||||+++|+++-+.+|.++ ....+++||+
T Consensus 165 ~~~~~~~~~-a~~~aGl~v~~iv~ep~Aaa~a~l~~~e~~~gv~vvDiGggtTdisv~~~G~l~--~~~~i~~GG~---- 237 (420)
T PRK09472 165 NDMAKNIVK-AVERCGLKVDQLIFAGLASSYAVLTEDERELGVCVVDIGGGTMDIAVYTGGALR--HTKVIPYAGN---- 237 (420)
T ss_pred hHHHHHHHH-HHHHcCCeEeeEEehhhHHHHHhcChhhhhcCeEEEEeCCCceEEEEEECCEEE--EEeeeechHH----
Confidence 444556665 66899999999999999999988643 48999999999999999999876 3467999999
Q ss_pred HHHHHHHHHHHhcCCCCCcccccccchhhHHHHHHHHHHcee
Q 007563 324 DISRCLLWTQRHHQTWPQIRTDILTKAMDLLMLNRIKESYCE 365 (598)
Q Consensus 324 dit~~l~~lL~~~~~~p~~~~~~l~~~~d~~l~e~lKe~~c~ 365 (598)
++|+.+...|. .+...+|++|.++..
T Consensus 238 ~it~dIa~~l~----------------i~~~~AE~lK~~~g~ 263 (420)
T PRK09472 238 VVTSDIAYAFG----------------TPPSDAEAIKVRHGC 263 (420)
T ss_pred HHHHHHHHHhC----------------cCHHHHHHHHHhcce
Confidence 99998875442 235679999987653
No 28
>PTZ00400 DnaK-type molecular chaperone; Provisional
Probab=98.70 E-value=1.5e-07 Score=108.42 Aligned_cols=91 Identities=21% Similarity=0.315 Sum_probs=71.4
Q ss_pred eEEecCCCCCcHHHHHHHHHHHHhcCCCeEeeehhhHHHHhhcCCc-----eEEEEEeCCCcEEEEEee--CCee-eccC
Q 007563 239 AILVLPESFDNREIKEMLSIVLRDLRFASAVVHQEGLAAVFGNGLS-----TACVVNMGAQVTSVICVE--DGVA-LPNT 310 (598)
Q Consensus 239 ~VLvip~~~~~~~vr~l~ellfe~~~f~~v~~~qesv~a~fgaG~~-----sa~VVDiGa~~TsV~pV~--dG~~-l~~s 310 (598)
+|+-+|..|+..+ |+.+.-..+..|++-+.++.++.||++++|.. .-+|+|+|++++.|+-+. +|.. +..+
T Consensus 177 ~VITVPa~f~~~q-R~a~~~Aa~~AGl~v~~li~EptAAAlay~~~~~~~~~vlV~DlGgGT~DvSv~~~~~g~~~v~a~ 255 (663)
T PTZ00400 177 AVITVPAYFNDSQ-RQATKDAGKIAGLDVLRIINEPTAAALAFGMDKNDGKTIAVYDLGGGTFDISILEILGGVFEVKAT 255 (663)
T ss_pred EEEEECCCCCHHH-HHHHHHHHHHcCCceEEEeCchHHHHHHhccccCCCcEEEEEeCCCCeEEEEEEEecCCeeEEEec
Confidence 6777888887665 45556677888999999999999999998864 589999999999998774 6643 2223
Q ss_pred cEEeccccccChHHHHHHHHHHHH
Q 007563 311 EKTLPFGGEVQILDISRCLLWTQR 334 (598)
Q Consensus 311 ~~~l~~GG~~~~~dit~~l~~lL~ 334 (598)
.-...+||+ |+++.|.+.+.
T Consensus 256 ~gd~~LGG~----d~D~~l~~~l~ 275 (663)
T PTZ00400 256 NGNTSLGGE----DFDQRILNYLI 275 (663)
T ss_pred ccCCCcCHH----HHHHHHHHHHH
Confidence 344689999 99999987654
No 29
>TIGR02350 prok_dnaK chaperone protein DnaK. Members of this family are the chaperone DnaK, of the DnaK-DnaJ-GrpE chaperone system. All members of the seed alignment were taken from completely sequenced bacterial or archaeal genomes and (except for Mycoplasma sequence) found clustered with other genes of this systems. This model excludes DnaK homologs that are not DnaK itself, such as the heat shock cognate protein HscA (TIGR01991). However, it is not designed to distinguish among DnaK paralogs in eukaryotes. Note that a number of dnaK genes have shadow ORFs in the same reverse (relative to dnaK) reading frame, a few of which have been assigned glutamate dehydrogenase activity. The significance of this observation is unclear; lengths of such shadow ORFs are highly variable as if the presumptive protein product is not conserved.
Probab=98.67 E-value=9.9e-08 Score=108.89 Aligned_cols=91 Identities=21% Similarity=0.306 Sum_probs=68.3
Q ss_pred eEEecCCCCCcHHHHHHHHHHHHhcCCCeEeeehhhHHHHhhcCCc------eEEEEEeCCCcEEEEEee--CCee-ecc
Q 007563 239 AILVLPESFDNREIKEMLSIVLRDLRFASAVVHQEGLAAVFGNGLS------TACVVNMGAQVTSVICVE--DGVA-LPN 309 (598)
Q Consensus 239 ~VLvip~~~~~~~vr~l~ellfe~~~f~~v~~~qesv~a~fgaG~~------sa~VVDiGa~~TsV~pV~--dG~~-l~~ 309 (598)
+|+-+|..|+..+ |+.+.-..+..|+.-+.++.++.||++++|.. .-+|+|+|+++|.|+.+. +|.. +..
T Consensus 133 ~VItVPa~f~~~q-R~a~~~Aa~~AGl~v~~li~EptAAAl~y~~~~~~~~~~vlV~D~Gggt~dvsv~~~~~~~~~v~~ 211 (595)
T TIGR02350 133 AVITVPAYFNDAQ-RQATKDAGKIAGLEVLRIINEPTAAALAYGLDKSKKDEKILVFDLGGGTFDVSILEIGDGVFEVLS 211 (595)
T ss_pred EEEEECCCCCHHH-HHHHHHHHHHcCCceEEEecchHHHHHHHhhcccCCCcEEEEEECCCCeEEEEEEEecCCeEEEEE
Confidence 6777888887665 44455566788999999999999999887643 479999999999887763 4432 222
Q ss_pred CcEEeccccccChHHHHHHHHHHHH
Q 007563 310 TEKTLPFGGEVQILDISRCLLWTQR 334 (598)
Q Consensus 310 s~~~l~~GG~~~~~dit~~l~~lL~ 334 (598)
+.....+||. |+++.|.+.+.
T Consensus 212 ~~gd~~lGG~----d~D~~l~~~~~ 232 (595)
T TIGR02350 212 TAGDTHLGGD----DFDQRIIDWLA 232 (595)
T ss_pred ecCCcccCch----hHHHHHHHHHH
Confidence 2334579999 99999987553
No 30
>TIGR01991 HscA Fe-S protein assembly chaperone HscA. The Heat Shock Cognate proteins HscA and HscB act together as chaperones. HscA resembles DnaK but belongs in a separate clade. The apparent function is to aid assembly of iron-sulfur cluster proteins. Homologs from Buchnera and Wolbachia are clearly in the same clade but are highly derived and score lower than some examples of DnaK.
Probab=98.67 E-value=4.9e-08 Score=111.22 Aligned_cols=111 Identities=21% Similarity=0.223 Sum_probs=78.3
Q ss_pred HHHHHHHHhhhhcCCCCCCCCccceEEecCCCCCcHHHHHHHHHHHHhcCCCeEeeehhhHHHHhhcCCc-----eEEEE
Q 007563 215 LYAIWDWILTEKLHIPRSERNLYSAILVLPESFDNREIKEMLSIVLRDLRFASAVVHQEGLAAVFGNGLS-----TACVV 289 (598)
Q Consensus 215 le~i~~~~l~~~L~i~~~~~~~y~~VLvip~~~~~~~vr~l~ellfe~~~f~~v~~~qesv~a~fgaG~~-----sa~VV 289 (598)
|..|++.+- ..++.+.. ++|+-+|..|+..+ |+.+.-..+..|+.-+.++.|+.||++++|.. +-+|+
T Consensus 114 L~~lk~~a~-~~lg~~v~-----~~VItVPa~f~~~q-R~a~~~Aa~~AGl~v~~li~EPtAAAlay~~~~~~~~~vlV~ 186 (599)
T TIGR01991 114 LKKLKQRAE-ESLGGDLV-----GAVITVPAYFDDAQ-RQATKDAARLAGLNVLRLLNEPTAAAVAYGLDKASEGIYAVY 186 (599)
T ss_pred HHHHHHHHH-HHhCCCcc-----eEEEEECCCCCHHH-HHHHHHHHHHcCCCceEEecCHHHHHHHHhhccCCCCEEEEE
Confidence 344444443 45654432 26777888887765 45556667889999999999999999887743 57999
Q ss_pred EeCCCcEEEEEee--CCee-eccCcEEeccccccChHHHHHHHHHHHHhc
Q 007563 290 NMGAQVTSVICVE--DGVA-LPNTEKTLPFGGEVQILDISRCLLWTQRHH 336 (598)
Q Consensus 290 DiGa~~TsV~pV~--dG~~-l~~s~~~l~~GG~~~~~dit~~l~~lL~~~ 336 (598)
|+|++++.|+.+. +|.. +-.+.....+||+ |+++.|.+.+..+
T Consensus 187 DlGgGT~DvSi~~~~~~~~~vla~~gd~~lGG~----d~D~~l~~~l~~~ 232 (599)
T TIGR01991 187 DLGGGTFDVSILKLTKGVFEVLATGGDSALGGD----DFDHALAKWILKQ 232 (599)
T ss_pred EcCCCeEEEEEEEEcCCeEEEEEEcCCCCCCHH----HHHHHHHHHHHHh
Confidence 9999999998874 4532 1122223589999 9999998876543
No 31
>PRK00290 dnaK molecular chaperone DnaK; Provisional
Probab=98.65 E-value=2.5e-07 Score=106.14 Aligned_cols=91 Identities=20% Similarity=0.279 Sum_probs=68.8
Q ss_pred eEEecCCCCCcHHHHHHHHHHHHhcCCCeEeeehhhHHHHhhcCC-----ceEEEEEeCCCcEEEEEeeC--Cee-eccC
Q 007563 239 AILVLPESFDNREIKEMLSIVLRDLRFASAVVHQEGLAAVFGNGL-----STACVVNMGAQVTSVICVED--GVA-LPNT 310 (598)
Q Consensus 239 ~VLvip~~~~~~~vr~l~ellfe~~~f~~v~~~qesv~a~fgaG~-----~sa~VVDiGa~~TsV~pV~d--G~~-l~~s 310 (598)
+|+-+|..|+..+ |+.+.-..+..|+.-+.++.++.||++++|. .+.+|+|+|+++|.|+.+.- |.. +..+
T Consensus 136 ~VItVPa~f~~~q-R~a~~~Aa~~AGl~v~~li~EptAAAl~y~~~~~~~~~vlV~D~GggT~dvsv~~~~~~~~~vla~ 214 (627)
T PRK00290 136 AVITVPAYFNDAQ-RQATKDAGKIAGLEVLRIINEPTAAALAYGLDKKGDEKILVYDLGGGTFDVSILEIGDGVFEVLST 214 (627)
T ss_pred EEEEECCCCCHHH-HHHHHHHHHHcCCceEEEecchHHHHHHhhhccCCCCEEEEEECCCCeEEEEEEEEeCCeEEEEEe
Confidence 5777888887665 4455566678899999999999999988875 35899999999999887733 322 2222
Q ss_pred cEEeccccccChHHHHHHHHHHHH
Q 007563 311 EKTLPFGGEVQILDISRCLLWTQR 334 (598)
Q Consensus 311 ~~~l~~GG~~~~~dit~~l~~lL~ 334 (598)
.....+||. ++++.|.+.+.
T Consensus 215 ~gd~~lGG~----d~D~~l~~~~~ 234 (627)
T PRK00290 215 NGDTHLGGD----DFDQRIIDYLA 234 (627)
T ss_pred cCCCCcChH----HHHHHHHHHHH
Confidence 334689999 99999987653
No 32
>TIGR01174 ftsA cell division protein FtsA. This bacterial cell division protein interacts with FtsZ, the bacterial homolog of tubulin. It is an ATP-binding protein and shows structural similarities to actin and heat shock cognate protein 70.
Probab=98.65 E-value=1.3e-07 Score=101.66 Aligned_cols=95 Identities=19% Similarity=0.312 Sum_probs=75.1
Q ss_pred HHHHHHHHHHHHhcCCCeEeeehhhHHHHhhcCCc-----eEEEEEeCCCcEEEEEeeCCeeeccCcEEeccccccChHH
Q 007563 250 REIKEMLSIVLRDLRFASAVVHQEGLAAVFGNGLS-----TACVVNMGAQVTSVICVEDGVALPNTEKTLPFGGEVQILD 324 (598)
Q Consensus 250 ~~vr~l~ellfe~~~f~~v~~~qesv~a~fgaG~~-----sa~VVDiGa~~TsV~pV~dG~~l~~s~~~l~~GG~~~~~d 324 (598)
..++.+.+ +++..|+.-+.+..+++|++++++.. ..+|||+|+.+|+++.+.+|.... ...+++||+ +
T Consensus 158 ~~v~~~~~-~~~~aGl~~~~i~~~~~A~a~a~~~~~~~~~~~~vvDiG~gtt~i~i~~~g~~~~--~~~i~~GG~----~ 230 (371)
T TIGR01174 158 TILRNLVK-CVERCGLEVDNIVLSGLASAIAVLTEDEKELGVCLIDIGGGTTDIAVYTGGSIRY--TKVIPIGGN----H 230 (371)
T ss_pred HHHHHHHH-HHHHcCCCeeeEEEhhhhhhhhhcCcchhcCCEEEEEeCCCcEEEEEEECCEEEE--EeeecchHH----H
Confidence 33334444 66889999999999999999987542 479999999999999999998664 456899999 9
Q ss_pred HHHHHHHHHHhcCCCCCcccccccchhhHHHHHHHHHHceecc
Q 007563 325 ISRCLLWTQRHHQTWPQIRTDILTKAMDLLMLNRIKESYCEIK 367 (598)
Q Consensus 325 it~~l~~lL~~~~~~p~~~~~~l~~~~d~~l~e~lKe~~c~v~ 367 (598)
+|+.+...+. .++..+|++|.+++...
T Consensus 231 it~~i~~~l~----------------~~~~~AE~lK~~~~~~~ 257 (371)
T TIGR01174 231 ITKDIAKALR----------------TPLEEAERIKIKYGCAS 257 (371)
T ss_pred HHHHHHHHhC----------------CCHHHHHHHHHHeeEec
Confidence 9998875431 23577999999998764
No 33
>PLN03184 chloroplast Hsp70; Provisional
Probab=98.63 E-value=6.3e-07 Score=103.45 Aligned_cols=91 Identities=22% Similarity=0.310 Sum_probs=69.3
Q ss_pred eEEecCCCCCcHHHHHHHHHHHHhcCCCeEeeehhhHHHHhhcCCc-----eEEEEEeCCCcEEEEEee--CCee-eccC
Q 007563 239 AILVLPESFDNREIKEMLSIVLRDLRFASAVVHQEGLAAVFGNGLS-----TACVVNMGAQVTSVICVE--DGVA-LPNT 310 (598)
Q Consensus 239 ~VLvip~~~~~~~vr~l~ellfe~~~f~~v~~~qesv~a~fgaG~~-----sa~VVDiGa~~TsV~pV~--dG~~-l~~s 310 (598)
+|+-+|..|+..+ |+.+.-..+.-|+.-+.++.|+.||++++|.. .-+|+|+|++++.|+.+. +|.. +..+
T Consensus 175 ~VITVPa~f~~~q-R~a~~~Aa~~AGl~v~~li~EPtAAAlayg~~~~~~~~vlV~DlGgGT~DvSi~~~~~~~~eVla~ 253 (673)
T PLN03184 175 AVITVPAYFNDSQ-RTATKDAGRIAGLEVLRIINEPTAASLAYGFEKKSNETILVFDLGGGTFDVSVLEVGDGVFEVLST 253 (673)
T ss_pred EEEEECCCCCHHH-HHHHHHHHHHCCCCeEEEeCcHHHHHHHhhcccCCCCEEEEEECCCCeEEEEEEEecCCEEEEEEe
Confidence 6777888887655 45555677888999999999999999988754 579999999999987773 3431 1122
Q ss_pred cEEeccccccChHHHHHHHHHHHH
Q 007563 311 EKTLPFGGEVQILDISRCLLWTQR 334 (598)
Q Consensus 311 ~~~l~~GG~~~~~dit~~l~~lL~ 334 (598)
.-...+||+ |+++.|.+.+.
T Consensus 254 ~gd~~LGG~----dfD~~L~~~~~ 273 (673)
T PLN03184 254 SGDTHLGGD----DFDKRIVDWLA 273 (673)
T ss_pred cCCCccCHH----HHHHHHHHHHH
Confidence 234689999 99999987653
No 34
>PTZ00186 heat shock 70 kDa precursor protein; Provisional
Probab=98.61 E-value=4.7e-07 Score=103.90 Aligned_cols=91 Identities=21% Similarity=0.252 Sum_probs=71.0
Q ss_pred eEEecCCCCCcHHHHHHHHHHHHhcCCCeEeeehhhHHHHhhcCCc-----eEEEEEeCCCcEEEEEee--CCee-eccC
Q 007563 239 AILVLPESFDNREIKEMLSIVLRDLRFASAVVHQEGLAAVFGNGLS-----TACVVNMGAQVTSVICVE--DGVA-LPNT 310 (598)
Q Consensus 239 ~VLvip~~~~~~~vr~l~ellfe~~~f~~v~~~qesv~a~fgaG~~-----sa~VVDiGa~~TsV~pV~--dG~~-l~~s 310 (598)
+|+-+|..|+..+ |+.+.-..+..|+.-+.++.|+.||++++|.. .-+|+|+|++++.|+.+. +|.. +..+
T Consensus 163 aVITVPayF~~~q-R~at~~Aa~~AGl~v~rlInEPtAAAlayg~~~~~~~~vlV~DlGGGT~DvSil~~~~g~~~V~at 241 (657)
T PTZ00186 163 AVVTCPAYFNDAQ-RQATKDAGTIAGLNVIRVVNEPTAAALAYGMDKTKDSLIAVYDLGGGTFDISVLEIAGGVFEVKAT 241 (657)
T ss_pred EEEEECCCCChHH-HHHHHHHHHHcCCCeEEEEcChHHHHHHHhccCCCCCEEEEEECCCCeEEEEEEEEeCCEEEEEEe
Confidence 5777777777664 55666677888999999999999999988753 579999999999998885 6743 2223
Q ss_pred cEEeccccccChHHHHHHHHHHHH
Q 007563 311 EKTLPFGGEVQILDISRCLLWTQR 334 (598)
Q Consensus 311 ~~~l~~GG~~~~~dit~~l~~lL~ 334 (598)
.-...+||+ |+++.|.+.+.
T Consensus 242 ~Gd~~LGG~----DfD~~l~~~~~ 261 (657)
T PTZ00186 242 NGDTHLGGE----DFDLALSDYIL 261 (657)
T ss_pred cCCCCCCch----hHHHHHHHHHH
Confidence 335689999 99998877543
No 35
>PRK13411 molecular chaperone DnaK; Provisional
Probab=98.56 E-value=2.3e-07 Score=106.84 Aligned_cols=109 Identities=20% Similarity=0.254 Sum_probs=76.1
Q ss_pred HHHHHHHHhhhhcCCCCCCCCccceEEecCCCCCcHHHHHHHHHHHHhcCCCeEeeehhhHHHHhhcCCc------eEEE
Q 007563 215 LYAIWDWILTEKLHIPRSERNLYSAILVLPESFDNREIKEMLSIVLRDLRFASAVVHQEGLAAVFGNGLS------TACV 288 (598)
Q Consensus 215 le~i~~~~l~~~L~i~~~~~~~y~~VLvip~~~~~~~vr~l~ellfe~~~f~~v~~~qesv~a~fgaG~~------sa~V 288 (598)
|..+++.+- ..|+-+.. ++|+-+|..|+..+ |+.+.-..+.-|+.-+.++.|+.||++++|.. .-+|
T Consensus 118 L~~lk~~ae-~~lg~~v~-----~~VITVPa~f~~~q-R~a~~~Aa~~AGl~v~~li~EPtAAAl~y~~~~~~~~~~vlV 190 (653)
T PRK13411 118 LQKLKQDAE-AYLGEPVT-----QAVITVPAYFTDAQ-RQATKDAGTIAGLEVLRIINEPTAAALAYGLDKQDQEQLILV 190 (653)
T ss_pred HHHHHHHHH-HHhCCCcc-----eEEEEECCCCCcHH-HHHHHHHHHHcCCCeEEEecchHHHHHHhcccccCCCCEEEE
Confidence 344444442 45653322 26777888887665 44555567788999999999999999988763 4799
Q ss_pred EEeCCCcEEEEEee--CCee-eccCcEEeccccccChHHHHHHHHHHHH
Q 007563 289 VNMGAQVTSVICVE--DGVA-LPNTEKTLPFGGEVQILDISRCLLWTQR 334 (598)
Q Consensus 289 VDiGa~~TsV~pV~--dG~~-l~~s~~~l~~GG~~~~~dit~~l~~lL~ 334 (598)
+|+|++++.|+-+. +|.. +..+.-...+||+ |+++.|.+.+.
T Consensus 191 ~DlGgGT~dvsi~~~~~~~~~V~at~gd~~LGG~----dfD~~l~~~l~ 235 (653)
T PRK13411 191 FDLGGGTFDVSILQLGDGVFEVKATAGNNHLGGD----DFDNCIVDWLV 235 (653)
T ss_pred EEcCCCeEEEEEEEEeCCEEEEEEEecCCCcCHH----HHHHHHHHHHH
Confidence 99999999988763 3432 2222334579999 99999886553
No 36
>PRK13410 molecular chaperone DnaK; Provisional
Probab=98.55 E-value=2.3e-07 Score=106.86 Aligned_cols=109 Identities=22% Similarity=0.278 Sum_probs=76.8
Q ss_pred HHHHHHHHhhhhcCCCCCCCCccceEEecCCCCCcHHHHHHHHHHHHhcCCCeEeeehhhHHHHhhcCCc-----eEEEE
Q 007563 215 LYAIWDWILTEKLHIPRSERNLYSAILVLPESFDNREIKEMLSIVLRDLRFASAVVHQEGLAAVFGNGLS-----TACVV 289 (598)
Q Consensus 215 le~i~~~~l~~~L~i~~~~~~~y~~VLvip~~~~~~~vr~l~ellfe~~~f~~v~~~qesv~a~fgaG~~-----sa~VV 289 (598)
|..+++.+- ..|+-+.. ++|+-+|..|+..+ |+.+.-+.+.-|+.-+.++.|+.||++++|.. +-+|+
T Consensus 120 L~~lk~~ae-~~lg~~v~-----~~VITVPa~f~~~q-R~a~~~Aa~~AGl~v~~li~EPtAAAlayg~~~~~~~~vlV~ 192 (668)
T PRK13410 120 LRKLADDAS-RYLGEPVT-----GAVITVPAYFNDSQ-RQATRDAGRIAGLEVERILNEPTAAALAYGLDRSSSQTVLVF 192 (668)
T ss_pred HHHHHHHHH-HHhCCCcc-----eEEEEECCCCCHHH-HHHHHHHHHHcCCCeEEEecchHHHHHHhccccCCCCEEEEE
Confidence 344555443 45553322 26777888887665 44555566788999999999999999998763 58999
Q ss_pred EeCCCcEEEEEee--CCee-eccCcEEeccccccChHHHHHHHHHHHH
Q 007563 290 NMGAQVTSVICVE--DGVA-LPNTEKTLPFGGEVQILDISRCLLWTQR 334 (598)
Q Consensus 290 DiGa~~TsV~pV~--dG~~-l~~s~~~l~~GG~~~~~dit~~l~~lL~ 334 (598)
|+|++++.|+.+. +|.. +..+.-...+||. |+++.|.+.+.
T Consensus 193 DlGgGT~Dvsv~~~~~g~~~V~at~gd~~lGG~----dfD~~l~~~l~ 236 (668)
T PRK13410 193 DLGGGTFDVSLLEVGNGVFEVKATSGDTQLGGN----DFDKRIVDWLA 236 (668)
T ss_pred ECCCCeEEEEEEEEcCCeEEEEEeecCCCCChh----HHHHHHHHHHH
Confidence 9999999988774 4532 2222334579999 99998886553
No 37
>PTZ00009 heat shock 70 kDa protein; Provisional
Probab=98.53 E-value=6.3e-07 Score=103.27 Aligned_cols=91 Identities=20% Similarity=0.276 Sum_probs=69.8
Q ss_pred eEEecCCCCCcHHHHHHHHHHHHhcCCCeEeeehhhHHHHhhcCC-------ceEEEEEeCCCcEEEEEee--CCee-ec
Q 007563 239 AILVLPESFDNREIKEMLSIVLRDLRFASAVVHQEGLAAVFGNGL-------STACVVNMGAQVTSVICVE--DGVA-LP 308 (598)
Q Consensus 239 ~VLvip~~~~~~~vr~l~ellfe~~~f~~v~~~qesv~a~fgaG~-------~sa~VVDiGa~~TsV~pV~--dG~~-l~ 308 (598)
+|+-+|..|+..+ |+.+.-+.+..|+.-+.++.++.||++++|. .+-+|+|+|++++.|+-|. +|.. +.
T Consensus 143 ~VItVPa~f~~~q-R~a~~~Aa~~AGl~v~~li~EptAAAl~y~~~~~~~~~~~vlv~D~GggT~dvsv~~~~~~~~~v~ 221 (653)
T PTZ00009 143 AVVTVPAYFNDSQ-RQATKDAGTIAGLNVLRIINEPTAAAIAYGLDKKGDGEKNVLIFDLGGGTFDVSLLTIEDGIFEVK 221 (653)
T ss_pred eEEEeCCCCCHHH-HHHHHHHHHHcCCceeEEecchHHHHHHHhhhccCCCCCEEEEEECCCCeEEEEEEEEeCCeEEEE
Confidence 5777888887655 5566667788999999999999999988865 3589999999999988764 5542 22
Q ss_pred cCcEEeccccccChHHHHHHHHHHHH
Q 007563 309 NTEKTLPFGGEVQILDISRCLLWTQR 334 (598)
Q Consensus 309 ~s~~~l~~GG~~~~~dit~~l~~lL~ 334 (598)
.+.-...+||+ |+++.|.+.+.
T Consensus 222 a~~gd~~lGG~----d~D~~l~~~~~ 243 (653)
T PTZ00009 222 ATAGDTHLGGE----DFDNRLVEFCV 243 (653)
T ss_pred EecCCCCCChH----HHHHHHHHHHH
Confidence 22234589999 99999887553
No 38
>PRK05183 hscA chaperone protein HscA; Provisional
Probab=98.49 E-value=4e-07 Score=104.16 Aligned_cols=92 Identities=21% Similarity=0.275 Sum_probs=70.2
Q ss_pred eEEecCCCCCcHHHHHHHHHHHHhcCCCeEeeehhhHHHHhhcCCc-----eEEEEEeCCCcEEEEEee--CCee-eccC
Q 007563 239 AILVLPESFDNREIKEMLSIVLRDLRFASAVVHQEGLAAVFGNGLS-----TACVVNMGAQVTSVICVE--DGVA-LPNT 310 (598)
Q Consensus 239 ~VLvip~~~~~~~vr~l~ellfe~~~f~~v~~~qesv~a~fgaG~~-----sa~VVDiGa~~TsV~pV~--dG~~-l~~s 310 (598)
+|+-+|..|+..+ |+.+.-..+..|+.-+.++.|+.||++++|.. .-+|+|+|++++.|+.+. +|.. +..+
T Consensus 152 ~VITVPa~f~~~q-R~a~~~Aa~~AGl~v~~li~EPtAAAlay~~~~~~~~~vlV~DlGGGT~DvSv~~~~~~~~evlat 230 (616)
T PRK05183 152 AVITVPAYFDDAQ-RQATKDAARLAGLNVLRLLNEPTAAAIAYGLDSGQEGVIAVYDLGGGTFDISILRLSKGVFEVLAT 230 (616)
T ss_pred EEEEECCCCCHHH-HHHHHHHHHHcCCCeEEEecchHHHHHHhhcccCCCCEEEEEECCCCeEEEEEEEeeCCEEEEEEe
Confidence 6777888887665 45566677889999999999999999887653 479999999999998874 4432 1222
Q ss_pred cEEeccccccChHHHHHHHHHHHHh
Q 007563 311 EKTLPFGGEVQILDISRCLLWTQRH 335 (598)
Q Consensus 311 ~~~l~~GG~~~~~dit~~l~~lL~~ 335 (598)
.....+||. |+++.|.+.+..
T Consensus 231 ~gd~~lGG~----d~D~~l~~~~~~ 251 (616)
T PRK05183 231 GGDSALGGD----DFDHLLADWILE 251 (616)
T ss_pred cCCCCcCHH----HHHHHHHHHHHH
Confidence 234579999 999999876654
No 39
>PRK01433 hscA chaperone protein HscA; Provisional
Probab=98.45 E-value=8.7e-07 Score=100.78 Aligned_cols=92 Identities=20% Similarity=0.308 Sum_probs=70.4
Q ss_pred eEEecCCCCCcHHHHHHHHHHHHhcCCCeEeeehhhHHHHhhcCCc-----eEEEEEeCCCcEEEEEee--CCee-eccC
Q 007563 239 AILVLPESFDNREIKEMLSIVLRDLRFASAVVHQEGLAAVFGNGLS-----TACVVNMGAQVTSVICVE--DGVA-LPNT 310 (598)
Q Consensus 239 ~VLvip~~~~~~~vr~l~ellfe~~~f~~v~~~qesv~a~fgaG~~-----sa~VVDiGa~~TsV~pV~--dG~~-l~~s 310 (598)
+|+-+|..|+..+ |+.+.-+.+.-|+.-+.++.|+.||++++|.. .-+|+|+|++++.|+-+. +|.. +-.+
T Consensus 144 aVITVPa~f~~~q-R~a~~~Aa~~AGl~v~~li~EPtAAAlay~~~~~~~~~vlV~DlGGGT~DvSi~~~~~~~~~V~at 222 (595)
T PRK01433 144 AVITVPAHFNDAA-RGEVMLAAKIAGFEVLRLIAEPTAAAYAYGLNKNQKGCYLVYDLGGGTFDVSILNIQEGIFQVIAT 222 (595)
T ss_pred EEEEECCCCCHHH-HHHHHHHHHHcCCCEEEEecCcHHHHHHHhcccCCCCEEEEEECCCCcEEEEEEEEeCCeEEEEEE
Confidence 6777888887654 55666677889999999999999999998753 469999999999988774 5532 1122
Q ss_pred cEEeccccccChHHHHHHHHHHHHh
Q 007563 311 EKTLPFGGEVQILDISRCLLWTQRH 335 (598)
Q Consensus 311 ~~~l~~GG~~~~~dit~~l~~lL~~ 335 (598)
.-...+||+ |+++.|.+.+..
T Consensus 223 ~gd~~lGG~----d~D~~l~~~~~~ 243 (595)
T PRK01433 223 NGDNMLGGN----DIDVVITQYLCN 243 (595)
T ss_pred cCCcccChH----HHHHHHHHHHHH
Confidence 233579999 999999887654
No 40
>PRK11678 putative chaperone; Provisional
Probab=98.27 E-value=2.4e-05 Score=86.16 Aligned_cols=86 Identities=20% Similarity=0.249 Sum_probs=64.1
Q ss_pred eEEecCCCCC-----cHHH--HHHHHHHHHhcCCCeEeeehhhHHHHhhcCC-----ceEEEEEeCCCcEEEEEee-CC-
Q 007563 239 AILVLPESFD-----NREI--KEMLSIVLRDLRFASAVVHQEGLAAVFGNGL-----STACVVNMGAQVTSVICVE-DG- 304 (598)
Q Consensus 239 ~VLvip~~~~-----~~~v--r~l~ellfe~~~f~~v~~~qesv~a~fgaG~-----~sa~VVDiGa~~TsV~pV~-dG- 304 (598)
+|+=+|..|+ ..+. ++.+.-..+..||+.+.|+.|+.||++++|. ...+|+|+|++++.++-|. ++
T Consensus 152 ~VItvPa~F~~~~~~~~qr~a~~~l~~Aa~~AG~~~v~li~EPtAAAl~y~~~~~~~~~vlV~D~GGGT~D~Svv~~~~~ 231 (450)
T PRK11678 152 AVIGRPVNFQGLGGEEANRQAEGILERAAKRAGFKDVEFQFEPVAAGLDFEATLTEEKRVLVVDIGGGTTDCSMLLMGPS 231 (450)
T ss_pred EEEEECCccccCCcchhHHHHHHHHHHHHHHcCCCEEEEEcCHHHHHHHhccccCCCCeEEEEEeCCCeEEEEEEEecCc
Confidence 5777787776 2222 2345667788999999999999999999874 3589999999999888873 22
Q ss_pred ---------eeeccCcEEeccccccChHHHHHHHH
Q 007563 305 ---------VALPNTEKTLPFGGEVQILDISRCLL 330 (598)
Q Consensus 305 ---------~~l~~s~~~l~~GG~~~~~dit~~l~ 330 (598)
-++..+- ..+||+ |+++.|.
T Consensus 232 ~~~~~~r~~~vla~~G--~~lGG~----DfD~~L~ 260 (450)
T PRK11678 232 WRGRADRSASLLGHSG--QRIGGN----DLDIALA 260 (450)
T ss_pred ccccCCcceeEEecCC--CCCChH----HHHHHHH
Confidence 1232222 369999 9999985
No 41
>PF00012 HSP70: Hsp70 protein; InterPro: IPR013126 Heat shock proteins, Hsp70 chaperones help to fold many proteins. Hsp70 assisted folding involves repeated cycles of substrate binding and release. Hsp70 activity is ATP dependent. Hsp70 proteins are made up of two regions: the amino terminus is the ATPase domain and the carboxyl terminus is the substrate binding region []. Hsp70 proteins have an average molecular weight of 70 kDa [, , ]. In most species,there are many proteins that belong to the hsp70 family. Some of these are only expressed under stress conditions (strictly inducible), while some are present in cells under normal growth conditions and are not heat-inducible (constitutive or cognate) [, ]. Hsp70 proteins can be found in different cellular compartments(nuclear, cytosolic, mitochondrial, endoplasmic reticulum, for example).; PDB: 2P32_D 3D2F_A 2QXL_A 3D2E_C 3C7N_A 3FE1_C 4ANI_C 2V7Y_A 2KHO_A 3DPQ_B ....
Probab=98.23 E-value=4.6e-07 Score=103.44 Aligned_cols=92 Identities=23% Similarity=0.272 Sum_probs=68.0
Q ss_pred eEEecCCCCCcHHHHHHHHHHHHhcCCCeEeeehhhHHHHhhcCC------ceEEEEEeCCCcEEEEEee--CCeee-cc
Q 007563 239 AILVLPESFDNREIKEMLSIVLRDLRFASAVVHQEGLAAVFGNGL------STACVVNMGAQVTSVICVE--DGVAL-PN 309 (598)
Q Consensus 239 ~VLvip~~~~~~~vr~l~ellfe~~~f~~v~~~qesv~a~fgaG~------~sa~VVDiGa~~TsV~pV~--dG~~l-~~ 309 (598)
+|+-+|..|+..+ |+.+.-+.+..|+..+.++.|+.||+++++. .+-+|+|+|++++.|+.|. +|..- ..
T Consensus 138 ~vitVPa~~~~~q-r~~~~~Aa~~agl~~~~li~Ep~Aaa~~y~~~~~~~~~~vlv~D~Gggt~dvs~~~~~~~~~~v~~ 216 (602)
T PF00012_consen 138 VVITVPAYFTDEQ-RQALRDAAELAGLNVLRLINEPTAAALAYGLERSDKGKTVLVVDFGGGTFDVSVVEFSNGQFEVLA 216 (602)
T ss_dssp EEEEE-TT--HHH-HHHHHHHHHHTT-EEEEEEEHHHHHHHHTTTTSSSSEEEEEEEEEESSEEEEEEEEEETTEEEEEE
T ss_pred ceeeechhhhhhh-hhcccccccccccccceeecccccccccccccccccccceeccccccceEeeeehhcccccccccc
Confidence 6777888888776 4566667788999999999999999987764 3689999999999988873 56432 22
Q ss_pred CcEEeccccccChHHHHHHHHHHHHh
Q 007563 310 TEKTLPFGGEVQILDISRCLLWTQRH 335 (598)
Q Consensus 310 s~~~l~~GG~~~~~dit~~l~~lL~~ 335 (598)
+.....+||. ++++.|...+..
T Consensus 217 ~~~~~~lGG~----~~D~~l~~~~~~ 238 (602)
T PF00012_consen 217 TAGDNNLGGR----DFDEALAEYLLE 238 (602)
T ss_dssp EEEETTCSHH----HHHHHHHHHHHH
T ss_pred cccccccccc----eecceeeccccc
Confidence 3345689999 999999876643
No 42
>COG0849 ftsA Cell division ATPase FtsA [Cell division and chromosome partitioning]
Probab=98.22 E-value=8.4e-06 Score=88.10 Aligned_cols=90 Identities=17% Similarity=0.248 Sum_probs=73.4
Q ss_pred HHHHHHHHhcCCCeEeeehhhHHHHhhcCCc-----eEEEEEeCCCcEEEEEeeCCeeeccCcEEeccccccChHHHHHH
Q 007563 254 EMLSIVLRDLRFASAVVHQEGLAAVFGNGLS-----TACVVNMGAQVTSVICVEDGVALPNTEKTLPFGGEVQILDISRC 328 (598)
Q Consensus 254 ~l~ellfe~~~f~~v~~~qesv~a~fgaG~~-----sa~VVDiGa~~TsV~pV~dG~~l~~s~~~l~~GG~~~~~dit~~ 328 (598)
+-+.-++|+.|..=..++-+++||+.++=.. .+|+||||+.+|+|+...+|.+... ..+++||+ ++|.-
T Consensus 168 ~Nl~k~v~r~gl~v~~i~l~plAsa~a~L~~dEkelGv~lIDiG~GTTdIai~~~G~l~~~--~~ipvgG~----~vT~D 241 (418)
T COG0849 168 ENLEKCVERAGLKVDNIVLEPLASALAVLTEDEKELGVALIDIGGGTTDIAIYKNGALRYT--GVIPVGGD----HVTKD 241 (418)
T ss_pred HHHHHHHHHhCCCeeeEEEehhhhhhhccCcccHhcCeEEEEeCCCcEEEEEEECCEEEEE--eeEeeCcc----HHHHH
Confidence 4455577888998888889999998876432 6899999999999999999988754 45899999 99999
Q ss_pred HHHHHHhcCCCCCcccccccchhhHHHHHHHHHHcee
Q 007563 329 LLWTQRHHQTWPQIRTDILTKAMDLLMLNRIKESYCE 365 (598)
Q Consensus 329 l~~lL~~~~~~p~~~~~~l~~~~d~~l~e~lKe~~c~ 365 (598)
+.+.|. .++.-||+||.++..
T Consensus 242 Ia~~l~----------------t~~~~AE~iK~~~g~ 262 (418)
T COG0849 242 IAKGLK----------------TPFEEAERIKIKYGS 262 (418)
T ss_pred HHHHhC----------------CCHHHHHHHHHHcCc
Confidence 987663 245779999998753
No 43
>COG0443 DnaK Molecular chaperone [Posttranslational modification, protein turnover, chaperones]
Probab=98.02 E-value=4.9e-05 Score=86.24 Aligned_cols=150 Identities=23% Similarity=0.331 Sum_probs=100.2
Q ss_pred ceEEccccccCC----CCCCceEecceecC------eeeec-CCCCccccHH-HHHHHHHHHhhhhcCCCCCCCCccceE
Q 007563 173 EFICGEEALRVS----PTEPYCIHRPIRRG------HLNIS-QHYPMQQVLE-DLYAIWDWILTEKLHIPRSERNLYSAI 240 (598)
Q Consensus 173 ~~~vGeeAl~~~----~~~~~~l~~Pi~~G------~~n~~-~~~s~~~~~~-dle~i~~~~l~~~L~i~~~~~~~y~~V 240 (598)
+.++|..|.+-. .+--+.+.+-|-+| .+... ..++.++.-. -|.++++++ ...|+-+..+ +|
T Consensus 51 ~~~vG~~A~~q~~~~p~~t~~~~kr~~G~~~~~~~~~~~~~~~~~~~eeisa~~L~~lk~~a-e~~lg~~v~~-----~V 124 (579)
T COG0443 51 EVLVGQAAKRQAVDNPENTIFSIKRKIGRGSNGLKISVEVDGKKYTPEEISAMILTKLKEDA-EAYLGEKVTD-----AV 124 (579)
T ss_pred CEEecHHHHHHhhhCCcceEEEEehhcCCCCCCCcceeeeCCeeeCHHHHHHHHHHHHHHHH-HHhhCCCcce-----EE
Confidence 588999887642 22235555555543 12222 1333333222 245555555 3455543332 46
Q ss_pred EecCCCCCcHHHHHHHHHHHHhcCCCeEeeehhhHHHHhhcCCc-----eEEEEEeCCCcEEEEEee--CCe-eeccCcE
Q 007563 241 LVLPESFDNREIKEMLSIVLRDLRFASAVVHQEGLAAVFGNGLS-----TACVVNMGAQVTSVICVE--DGV-ALPNTEK 312 (598)
Q Consensus 241 Lvip~~~~~~~vr~l~ellfe~~~f~~v~~~qesv~a~fgaG~~-----sa~VVDiGa~~TsV~pV~--dG~-~l~~s~~ 312 (598)
+=+|..|+..+ |..+.-..+..|+.-+.++.|+.||+|++|.. .-+|+|+|++++.|+=|. +|. -+..+..
T Consensus 125 ItVPayF~d~q-R~at~~A~~iaGl~vlrlinEPtAAAlayg~~~~~~~~vlV~DlGGGTfDvSll~~~~g~~ev~at~g 203 (579)
T COG0443 125 ITVPAYFNDAQ-RQATKDAARIAGLNVLRLINEPTAAALAYGLDKGKEKTVLVYDLGGGTFDVSLLEIGDGVFEVLATGG 203 (579)
T ss_pred EEeCCCCCHHH-HHHHHHHHHHcCCCeEEEecchHHHHHHhHhccCCCcEEEEEEcCCCCEEEEEEEEcCCEEEEeecCC
Confidence 66777777666 67888888999999999999999999999864 689999999999999884 453 3334455
Q ss_pred EeccccccChHHHHHHHHHHH
Q 007563 313 TLPFGGEVQILDISRCLLWTQ 333 (598)
Q Consensus 313 ~l~~GG~~~~~dit~~l~~lL 333 (598)
...+||+ |++..|...+
T Consensus 204 d~~LGGd----dfD~~l~~~~ 220 (579)
T COG0443 204 DNHLGGD----DFDNALIDYL 220 (579)
T ss_pred CcccCch----hHHHHHHHHH
Confidence 6789999 9999887643
No 44
>TIGR01175 pilM type IV pilus assembly protein PilM. This protein is required for the assembly of the type IV fimbria in Pseudomonas aeruginosa responsible for twitching motility, and for a similar pilus-like structure in Synechocystis. It is also found in species such as Deinococcus described as having natural transformation (for which a type IV pilus-like structure is proposed) but not fimbria.
Probab=98.00 E-value=0.00018 Score=76.52 Aligned_cols=91 Identities=20% Similarity=0.271 Sum_probs=66.8
Q ss_pred cHHHHHHHHHHHHhcCCCeEeeehhhHHHHhhc------------CCceEEEEEeCCCcEEEEEeeCCeeeccCcEEecc
Q 007563 249 NREIKEMLSIVLRDLRFASAVVHQEGLAAVFGN------------GLSTACVVNMGAQVTSVICVEDGVALPNTEKTLPF 316 (598)
Q Consensus 249 ~~~vr~l~ellfe~~~f~~v~~~qesv~a~fga------------G~~sa~VVDiGa~~TsV~pV~dG~~l~~s~~~l~~ 316 (598)
+..++.+.++ |+..|+.-..+-.+++|..-+. ...+.++||||+..|+++-+.+|.++. ...+++
T Consensus 142 ~~~v~~~~~~-~~~aGl~~~~id~~~~Al~~~~~~~~~~~~~~~~~~~~~~lvdiG~~~t~l~i~~~g~~~~--~r~i~~ 218 (348)
T TIGR01175 142 KEVVDSRLHA-LKLAGLEPKVVDVESFALLRAWRLLGEQLASRTYRLTDAALVDIGATSSTLNLLHPGRMLF--TREVPF 218 (348)
T ss_pred HHHHHHHHHH-HHHcCCceEEEecHHHHHHHHHHHHHhhCccccccCceEEEEEECCCcEEEEEEECCeEEE--EEEeec
Confidence 4445556665 6788988777777777764332 112489999999999999999998773 567899
Q ss_pred ccccChHHHHHHHHHHHHhcCCCCCcccccccchhhHHHHHHHHHH
Q 007563 317 GGEVQILDISRCLLWTQRHHQTWPQIRTDILTKAMDLLMLNRIKES 362 (598)
Q Consensus 317 GG~~~~~dit~~l~~lL~~~~~~p~~~~~~l~~~~d~~l~e~lKe~ 362 (598)
||+ ++|+.+...+. .++.-++++|.+
T Consensus 219 G~~----~i~~~i~~~~~----------------~~~~~Ae~~k~~ 244 (348)
T TIGR01175 219 GTR----QLTSELSRAYG----------------LNPEEAGEAKQQ 244 (348)
T ss_pred hHH----HHHHHHHHHcC----------------CCHHHHHHHHhc
Confidence 999 99998875431 245678888864
No 45
>PF11104 PilM_2: Type IV pilus assembly protein PilM;; PDB: 2YCH_A.
Probab=97.23 E-value=0.0012 Score=70.15 Aligned_cols=124 Identities=20% Similarity=0.388 Sum_probs=70.0
Q ss_pred HHHHHHHHHHHhhhhcCCCCCCCC--------------ccceEEecCCCCCcHH-HHHHHHHHHHhcCCCeEeeehhhHH
Q 007563 212 LEDLYAIWDWILTEKLHIPRSERN--------------LYSAILVLPESFDNRE-IKEMLSIVLRDLRFASAVVHQEGLA 276 (598)
Q Consensus 212 ~~dle~i~~~~l~~~L~i~~~~~~--------------~y~~VLvip~~~~~~~-vr~l~ellfe~~~f~~v~~~qesv~ 276 (598)
-++++..+.+-..+.+.++.++.. .+. ||++- .++. +...++ +|+..|+.-..+=-++.|
T Consensus 87 ~~el~~~I~~Ea~~~iP~~~~e~~~D~~vl~~~~~~~~~~~-Vll~A---a~k~~v~~~~~-~~~~aGL~~~~vDv~~~A 161 (340)
T PF11104_consen 87 EKELEEAIRWEAEQYIPFPLEEVVFDYQVLGESEDGEEKME-VLLVA---APKEIVESYVE-LFEEAGLKPVAVDVEAFA 161 (340)
T ss_dssp HHHHHHHHHHHHGGG-SS----EEEEEEESS-GS-TTSEEE-EEEEE---EEHHHHHHHHH-HHHHTT-EEEEEEEHHHH
T ss_pred HHHHHHHHHHHHHhhCCCChhHeEEEEEEeccCCCCCCceE-EEEEE---EcHHHHHHHHH-HHHHcCCceEEEeehHHH
Confidence 455666666666666655443321 121 22210 1333 334444 567888876666544443
Q ss_pred --HHhhcC---------CceEEEEEeCCCcEEEEEeeCCeeeccCcEEeccccccChHHHHHHHHHHHHhcCCCCCcccc
Q 007563 277 --AVFGNG---------LSTACVVNMGAQVTSVICVEDGVALPNTEKTLPFGGEVQILDISRCLLWTQRHHQTWPQIRTD 345 (598)
Q Consensus 277 --a~fgaG---------~~sa~VVDiGa~~TsV~pV~dG~~l~~s~~~l~~GG~~~~~dit~~l~~lL~~~~~~p~~~~~ 345 (598)
-+|... ..+-++||||+..|+++-+.+|.++- .+.+++||+ ++|+.+.+.+.
T Consensus 162 l~r~~~~~~~~~~~~~~~~~~~lvdiG~~~t~~~i~~~g~~~f--~R~i~~G~~----~l~~~i~~~~~----------- 224 (340)
T PF11104_consen 162 LARLFEFLEPQLPDEEDAETVALVDIGASSTTVIIFQNGKPIF--SRSIPIGGN----DLTEAIARELG----------- 224 (340)
T ss_dssp GGGGGHHHHHTST----T-EEEEEEE-SS-EEEEEEETTEEEE--EEEES-SHH----HHHHHHHHHTT-----------
T ss_pred HHHHHHHHHHhCCcccccceEEEEEecCCeEEEEEEECCEEEE--EEEEeeCHH----HHHHHHHHhcC-----------
Confidence 334331 12469999999999999999999873 457899999 99998875431
Q ss_pred cccchhhHHHHHHHHHH
Q 007563 346 ILTKAMDLLMLNRIKES 362 (598)
Q Consensus 346 ~l~~~~d~~l~e~lKe~ 362 (598)
.++.-++++|..
T Consensus 225 -----i~~~~Ae~~k~~ 236 (340)
T PF11104_consen 225 -----IDFEEAEELKRS 236 (340)
T ss_dssp -------HHHHHHHHHH
T ss_pred -----CCHHHHHHHHhc
Confidence 345667777764
No 46
>PRK13917 plasmid segregation protein ParM; Provisional
Probab=97.12 E-value=0.0021 Score=68.61 Aligned_cols=69 Identities=12% Similarity=0.185 Sum_probs=58.1
Q ss_pred cCCCeEeeehhhHHHHhhcCC-------------ceEEEEEeCCCcEEEEEeeCCeeeccCcEEeccccccChHHHHHHH
Q 007563 263 LRFASAVVHQEGLAAVFGNGL-------------STACVVNMGAQVTSVICVEDGVALPNTEKTLPFGGEVQILDISRCL 329 (598)
Q Consensus 263 ~~f~~v~~~qesv~a~fgaG~-------------~sa~VVDiGa~~TsV~pV~dG~~l~~s~~~l~~GG~~~~~dit~~l 329 (598)
..|..|.+++|+++|.|.... ...+|||||+.+|.++-+.+|.+.......++.|+. ++-+.+
T Consensus 151 I~i~~V~V~pQ~~ga~~~~~~~~~g~~~~~~~~~~~ilvIDIG~~TtD~~v~~~~~~~~~~s~s~~~G~~----~~~~~I 226 (344)
T PRK13917 151 INVKGVKVVAQPMGTLLDLYLDNDGVVADKAFEEGKVSVIDFGSGTTDLDTIQNLKRVEEESFVIPKGTI----DVYKRI 226 (344)
T ss_pred EEEEEEEEecccHHHHHHHHhcccCcccchhcccCcEEEEEcCCCcEEEEEEeCcEEcccccccccchHH----HHHHHH
Confidence 457789999999999886643 245999999999999999988888877778999999 999999
Q ss_pred HHHHHh
Q 007563 330 LWTQRH 335 (598)
Q Consensus 330 ~~lL~~ 335 (598)
.+.++.
T Consensus 227 ~~~i~~ 232 (344)
T PRK13917 227 ASHISK 232 (344)
T ss_pred HHHHHh
Confidence 888843
No 47
>TIGR03739 PRTRC_D PRTRC system protein D. A novel genetic system characterized by six major proteins, included a ParB homolog and a ThiF homolog, is designated PRTRC, or ParB-Related,ThiF-Related Cassette. It is often found on plasmids. This protein family is designated PRTRC system protein D. The gray zone, between trusted and noise, includes proteins found in the same genomes as other proteins of the PRTRC systems, but not in the same contiguous gene region.
Probab=96.77 E-value=0.0052 Score=64.89 Aligned_cols=114 Identities=13% Similarity=0.097 Sum_probs=76.3
Q ss_pred HHHHHHHHHHhhhhcCCCCCCCCccceEEe-cCCCCCcHHHHHHHHHHHHh--------cCCCeEeeehhhHHHHhhc--
Q 007563 213 EDLYAIWDWILTEKLHIPRSERNLYSAILV-LPESFDNREIKEMLSIVLRD--------LRFASAVVHQEGLAAVFGN-- 281 (598)
Q Consensus 213 ~dle~i~~~~l~~~L~i~~~~~~~y~~VLv-ip~~~~~~~vr~l~ellfe~--------~~f~~v~~~qesv~a~fga-- 281 (598)
++...++.+++.. .+.+ +.. .+++ .|..+-..+.+++-+.+... +.+..|.+.+|++.|.|..
T Consensus 84 ~~~~~L~~~Al~~-~~~~--~~~---~lv~GLP~~~~~~~k~~l~~~l~g~~~~~~~~~i~I~~V~V~PQ~~Ga~~~~~~ 157 (320)
T TIGR03739 84 PEYMALLRGALAL-SKVR--EID---QLVVGLPVATLTTYKSALEKAVTGEHDIGAGKAVTVRKVLAVPQPQGALVHFVA 157 (320)
T ss_pred HHHHHHHHHHHHH-hcCC--CCC---EEEECCCHHHHHHHHHHHHHHhccceecCCceEEEEEEEEEeCCChHHHHHHHh
Confidence 3567777788743 3322 111 1222 33322122222355554432 5778899999999998754
Q ss_pred -------CCceEEEEEeCCCcEEEEEeeCCeeeccCcEEeccccccChHHHHHHHHHHHHhc
Q 007563 282 -------GLSTACVVNMGAQVTSVICVEDGVALPNTEKTLPFGGEVQILDISRCLLWTQRHH 336 (598)
Q Consensus 282 -------G~~sa~VVDiGa~~TsV~pV~dG~~l~~s~~~l~~GG~~~~~dit~~l~~lL~~~ 336 (598)
...+.+|||||+.+|.++-+.++.+.......++.|.. ++.+.+.+.+...
T Consensus 158 ~~~~~~~~~~~~lVIDIG~~TtD~~~~~~~~~~~~~s~s~~~G~~----~~~~~I~~~i~~~ 215 (320)
T TIGR03739 158 QHGKLLTGKEQSLIIDPGYFTFDWLVARGMRLVQKRSGSVNGGMS----DIYRLLAAEISKD 215 (320)
T ss_pred cCCCcccCcCcEEEEecCCCeeeeehccCCEEcccccCCchhHHH----HHHHHHHHHHHhh
Confidence 23457999999999999877777777777778899999 9999999888644
No 48
>COG4972 PilM Tfp pilus assembly protein, ATPase PilM [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=95.37 E-value=0.32 Score=50.76 Aligned_cols=116 Identities=16% Similarity=0.241 Sum_probs=72.8
Q ss_pred cHHHHHHHHHHHhhhhcCCCCCCCCccceEEecCCCC-----------CcHHHHHHHHHHHHhcCCCeEeeehhhHHHH-
Q 007563 211 VLEDLYAIWDWILTEKLHIPRSERNLYSAILVLPESF-----------DNREIKEMLSIVLRDLRFASAVVHQEGLAAV- 278 (598)
Q Consensus 211 ~~~dle~i~~~~l~~~L~i~~~~~~~y~~VLvip~~~-----------~~~~vr~l~ellfe~~~f~~v~~~qesv~a~- 278 (598)
+-++|+...++-...++-.+..+-+ +--.++.+..- +++++-+--.-.|+.-|+.-..+=-++.+..
T Consensus 99 de~eL~~~V~~ea~~y~PyP~EEv~-lDy~vlg~~~~~~e~v~Vll~AtrkE~v~~ri~a~~~AGl~~~vlDV~~fAl~r 177 (354)
T COG4972 99 DEKELEDQVESEASRYIPYPLEEVN-LDYQVLGPSANEPEKVQVLLVATRKEVVESRIDAFELAGLEPKVLDVESFALLR 177 (354)
T ss_pred cHHHHHHHHHHHHhhcCCCchhhcc-cceEEeccccCCCccEEEEEEEeehhhhHHHHHHHHHcCCCceEEehHHHHHHH
Confidence 4556666666666555544433221 11133333222 3455444444577888887777666665542
Q ss_pred -hh-----cCCc-e---EEEEEeCCCcEEEEEeeCCeeeccCcEEeccccccChHHHHHHHHHHH
Q 007563 279 -FG-----NGLS-T---ACVVNMGAQVTSVICVEDGVALPNTEKTLPFGGEVQILDISRCLLWTQ 333 (598)
Q Consensus 279 -fg-----aG~~-s---a~VVDiGa~~TsV~pV~dG~~l~~s~~~l~~GG~~~~~dit~~l~~lL 333 (598)
|. .|.. . ..|+|||+..|+++-+.+|.++. .+..++||+ ++|+.+.+.+
T Consensus 178 a~~~~~~~~~~~~a~~~vav~~Igat~s~l~vi~~gk~ly--~r~~~~g~~----Qlt~~i~r~~ 236 (354)
T COG4972 178 AYRLLASQFGPEEAAMKVAVFDIGATSSELLVIQDGKILY--TREVPVGTD----QLTQEIQRAY 236 (354)
T ss_pred HHHHHHHHhCCchhhhhheeeeecccceEEEEEECCeeee--EeeccCcHH----HHHHHHHHHh
Confidence 22 1221 2 45999999999999999999885 467899999 9999887653
No 49
>COG4820 EutJ Ethanolamine utilization protein, possible chaperonin [Amino acid transport and metabolism]
Probab=95.05 E-value=0.012 Score=56.79 Aligned_cols=110 Identities=22% Similarity=0.226 Sum_probs=78.6
Q ss_pred HHhhhhcCCCCCCCCccceEEecCCCC---CcHHHHHHHHHHHHhcCCCeEeeehhhHHHHhhcCCceEEEEEeCCCcEE
Q 007563 221 WILTEKLHIPRSERNLYSAILVLPESF---DNREIKEMLSIVLRDLRFASAVVHQEGLAAVFGNGLSTACVVNMGAQVTS 297 (598)
Q Consensus 221 ~~l~~~L~i~~~~~~~y~~VLvip~~~---~~~~vr~l~ellfe~~~f~~v~~~qesv~a~fgaG~~sa~VVDiGa~~Ts 297 (598)
..+.++|+|.-..- ---+||-- +++- .. -++|.-|....+++.|+.||++-.++..|.|||+|..+|-
T Consensus 83 d~lEk~lGi~~tha-----~taiPPGt~~~~~ri---~i-NViESAGlevl~vlDEPTAaa~vL~l~dg~VVDiGGGTTG 153 (277)
T COG4820 83 DTLEKQLGIRFTHA-----ATAIPPGTEQGDPRI---SI-NVIESAGLEVLHVLDEPTAAADVLQLDDGGVVDIGGGTTG 153 (277)
T ss_pred HHHHHhhCeEeeec-----cccCCCCccCCCceE---EE-EeecccCceeeeecCCchhHHHHhccCCCcEEEeCCCcce
Confidence 44567899864322 22244443 2221 12 2457889999999999999999999999999999999999
Q ss_pred EEEeeCCeeeccCcEEeccccccChHHHHHHHHHHHHhcCCCCCcccccccchhhHHHHHHHHH
Q 007563 298 VICVEDGVALPNTEKTLPFGGEVQILDISRCLLWTQRHHQTWPQIRTDILTKAMDLLMLNRIKE 361 (598)
Q Consensus 298 V~pV~dG~~l~~s~~~l~~GG~~~~~dit~~l~~lL~~~~~~p~~~~~~l~~~~d~~l~e~lKe 361 (598)
|+-|.+|.++..+ --+.||. ++|-.|. ++ ...+++-+|+.|.
T Consensus 154 Isi~kkGkViy~A--DEpTGGt----HmtLvlA------G~----------ygi~~EeAE~~Kr 195 (277)
T COG4820 154 ISIVKKGKVIYSA--DEPTGGT----HMTLVLA------GN----------YGISLEEAEQYKR 195 (277)
T ss_pred eEEEEcCcEEEec--cCCCCce----eEEEEEe------cc----------cCcCHhHHHHhhh
Confidence 9999999998644 3578898 7773332 21 2356677888874
No 50
>PRK10719 eutA reactivating factor for ethanolamine ammonia lyase; Provisional
Probab=94.86 E-value=0.065 Score=58.67 Aligned_cols=109 Identities=17% Similarity=0.199 Sum_probs=71.5
Q ss_pred cHHHHHHHHHHHhhhhcCCCCCCCCccceEEecCCCCCcHHHHHHHHH---HHHhcCCCeEeeehhhHHHHhhcCCc---
Q 007563 211 VLEDLYAIWDWILTEKLHIPRSERNLYSAILVLPESFDNREIKEMLSI---VLRDLRFASAVVHQEGLAAVFGNGLS--- 284 (598)
Q Consensus 211 ~~~dle~i~~~~l~~~L~i~~~~~~~y~~VLvip~~~~~~~vr~l~el---lfe~~~f~~v~~~qesv~a~fgaG~~--- 284 (598)
|-+.++.|.+.-| ++-++.+++... ..++|+-..-.....++.++- ...+|=+...-+--+++.+.+|+|..
T Consensus 64 D~~~i~~~V~~ey-~~Agi~~~die~-~ahIITg~~~~~~Nl~~~v~~~~~~~gdfVVA~AG~~le~iva~~ASg~avLs 141 (475)
T PRK10719 64 DEAAIKELIEEEY-QKAGIAPESIDS-GAVIITGETARKENAREVVMALSGSAGDFVVATAGPDLESIIAGKGAGAQTLS 141 (475)
T ss_pred cHHHHHHHHHHHH-HHcCCCHHHccc-cEEEEEechhHHHHHHHHHHHhcccccceeeeccCccHHHhhhHHHhhHHHhh
Confidence 6888999999888 567888765421 145665443333333333332 11222233344455666667777643
Q ss_pred -----eEEEEEeCCCcEEEEEeeCCeeeccCcEEeccccccChHHHHH
Q 007563 285 -----TACVVNMGAQVTSVICVEDGVALPNTEKTLPFGGEVQILDISR 327 (598)
Q Consensus 285 -----sa~VVDiGa~~TsV~pV~dG~~l~~s~~~l~~GG~~~~~dit~ 327 (598)
..|+||||++.|+++-..+|.++. ...+++||+ +||.
T Consensus 142 eEke~gVa~IDIGgGTT~iaVf~~G~l~~--T~~l~vGG~----~IT~ 183 (475)
T PRK10719 142 EERNTRVLNIDIGGGTANYALFDAGKVID--TACLNVGGR----LIET 183 (475)
T ss_pred hhccCceEEEEeCCCceEEEEEECCEEEE--EEEEecccc----eEEE
Confidence 589999999999999999998874 356899999 7763
No 51
>KOG0103 consensus Molecular chaperones HSP105/HSP110/SSE1, HSP70 superfamily [Posttranslational modification, protein turnover, chaperones]
Probab=94.25 E-value=1.5 Score=50.00 Aligned_cols=116 Identities=19% Similarity=0.275 Sum_probs=80.3
Q ss_pred ccHHHHHHHHHHHhhhhcCCCCCCCCccceEEecCCCCCcHHHHHHHHHHHHhcCCCeEeeehhhHHHHhhcCCc-----
Q 007563 210 QVLEDLYAIWDWILTEKLHIPRSERNLYSAILVLPESFDNREIKEMLSIVLRDLRFASAVVHQEGLAAVFGNGLS----- 284 (598)
Q Consensus 210 ~~~~dle~i~~~~l~~~L~i~~~~~~~y~~VLvip~~~~~~~vr~l~ellfe~~~f~~v~~~qesv~a~fgaG~~----- 284 (598)
+++..+-.=+..+-.+.|.-+-.+ ||+-+|..|+..+.|-+++.. .-.|+.-+.++.+..|++.++|..
T Consensus 116 Qv~Am~l~klk~~ae~~l~~~v~D-----cvIavP~~FTd~qRravldAA-~iagLn~lrLmnd~TA~Al~ygiyKtDLP 189 (727)
T KOG0103|consen 116 QVLAMLLTKLKATAEKNLKSPVSD-----CVIAVPSYFTDSQRRAVLDAA-RIAGLNPLRLMNDTTATALAYGIYKTDLP 189 (727)
T ss_pred HHHHHHHHHHHHHHHHhcCCCCCC-----eeEeccccccHHHHHHHHhHH-hhcCccceeeeecchHhHhhcccccccCC
Confidence 344444444444444555422222 788899989888766677655 578999999999999999888852
Q ss_pred -------eEEEEEeCCCcEEEEEe--eCCe-eeccCcEEeccccccChHHHHHHHHHHHHh
Q 007563 285 -------TACVVNMGAQVTSVICV--EDGV-ALPNTEKTLPFGGEVQILDISRCLLWTQRH 335 (598)
Q Consensus 285 -------sa~VVDiGa~~TsV~pV--~dG~-~l~~s~~~l~~GG~~~~~dit~~l~~lL~~ 335 (598)
+-..||+||+.++++-+ .-|. -+-.+.-.-.+||+ +.++.|.+....
T Consensus 190 ~~~ekpr~v~fvD~GHS~~q~si~aF~kG~lkvl~ta~D~~lGgr----~fDe~L~~hfa~ 246 (727)
T KOG0103|consen 190 ENEEKPRNVVFVDIGHSSYQVSIAAFTKGKLKVLATAFDRKLGGR----DFDEALIDHFAK 246 (727)
T ss_pred CcccCcceEEEEecccccceeeeeeeccCcceeeeeecccccccc----hHHHHHHHHHHH
Confidence 36889999999988765 3443 22233344589999 999999876644
No 52
>KOG0100 consensus Molecular chaperones GRP78/BiP/KAR2, HSP70 superfamily [Posttranslational modification, protein turnover, chaperones]
Probab=94.13 E-value=0.33 Score=51.70 Aligned_cols=111 Identities=17% Similarity=0.281 Sum_probs=69.5
Q ss_pred eEEecCCCCCcHHHHHHHHHHHHhcCCCeEeeehhhHHHHhhcCCc------eEEEEEeCCCcEEEE--EeeCCee-ecc
Q 007563 239 AILVLPESFDNREIKEMLSIVLRDLRFASAVVHQEGLAAVFGNGLS------TACVVNMGAQVTSVI--CVEDGVA-LPN 309 (598)
Q Consensus 239 ~VLvip~~~~~~~vr~l~ellfe~~~f~~v~~~qesv~a~fgaG~~------sa~VVDiGa~~TsV~--pV~dG~~-l~~ 309 (598)
+|+-+|..|+..+ |+.+.-.=---|..-+-++.++.+|+.++|+. +-+|.|.|...-.|+ -+++|.. +-.
T Consensus 175 AVvTvPAYFNDAQ-rQATKDAGtIAgLnV~RIiNePTaAAIAYGLDKk~gEknilVfDLGGGTFDVSlLtIdnGVFeVla 253 (663)
T KOG0100|consen 175 AVVTVPAYFNDAQ-RQATKDAGTIAGLNVVRIINEPTAAAIAYGLDKKDGEKNILVFDLGGGTFDVSLLTIDNGVFEVLA 253 (663)
T ss_pred eEEecchhcchHH-HhhhcccceeccceEEEeecCccHHHHHhcccccCCcceEEEEEcCCceEEEEEEEEcCceEEEEe
Confidence 5777777776654 33443222234667788999999999888863 689999999986655 5677752 122
Q ss_pred CcEEeccccccChHHHHHH----HHHHHHhcCCCCCcccccccchhhHHHHHHHHHH
Q 007563 310 TEKTLPFGGEVQILDISRC----LLWTQRHHQTWPQIRTDILTKAMDLLMLNRIKES 362 (598)
Q Consensus 310 s~~~l~~GG~~~~~dit~~----l~~lL~~~~~~p~~~~~~l~~~~d~~l~e~lKe~ 362 (598)
+.--..+||. |.++. |.++.+++.. .++ +-|...+..|+..
T Consensus 254 TnGDThLGGE----DFD~rvm~~fiklykkK~g------kDv--~kdnkA~~KLrRe 298 (663)
T KOG0100|consen 254 TNGDTHLGGE----DFDQRVMEYFIKLYKKKHG------KDV--RKDNKAVQKLRRE 298 (663)
T ss_pred cCCCcccCcc----chHHHHHHHHHHHHhhhcC------Ccc--chhhHHHHHHHHH
Confidence 2234578999 88764 4444443321 122 3455666666654
No 53
>PF06277 EutA: Ethanolamine utilisation protein EutA; InterPro: IPR009377 Proteins in this entry are EutA ethanolamine utilization proteins, reactivating factors for ethanolamine ammonia lyase, encoded by the ethanolamine utilization eut operon. The holoenzyme of adenosylcobalamin-dependent ethanolamine ammonia-lyase (EutBC, IPR0092462 from INTERPRO, IPR010628 from INTERPRO), which is part of the ethanolamine utilization pathway [, , ], undergoes suicidal inactivation during catalysis as well as inactivation in the absence of substrate. The inactivation involves the irreversible cleavage of the Co-C bond of the coenzyme. The inactivated holoenzyme undergoes rapid and continuous reactivation in the presence of ATP, Mg2+, and free adenosylcobalamin in permeabilised cells (in situ), homogenate, and cell extracts of Escherichia coli. The EutA protein is essential for reactivation. It was demonstrated with purified recombinant EutA that both the suicidally inactivated and O2-inactivated holoethanolamine ammonia lyase underwent rapid reactivation in vitro by EutA in the presence of adenosylcobalamin, ATP, and Mg2+ []. The inactive enzyme-cyanocobalamin complex was also activated in situ and in vitro by EutA under the same conditions. Thus EutA is believed to be the only component of the reactivating factor for ethanolamine ammonia lyase. Reactivation and activation occur through the exchange of modified coenzyme for free intact adenosylcobalamin []. Bacteria that harbor the ethanolamine utilization pathway can use ethanolamine as a source of carbon and nitrogen. For more information on the ethanolamine utilization pathway, please see IPR009194 from INTERPRO, IPR012408 from INTERPRO.
Probab=90.54 E-value=1.3 Score=48.71 Aligned_cols=116 Identities=19% Similarity=0.240 Sum_probs=82.0
Q ss_pred EecceecCeeeecCCCCccccHHHHHHHHHHHhhhhcCCCCCCCCccceEEecCCCCCcHHHHHHHHHHHHhcC---CCe
Q 007563 191 IHRPIRRGHLNISQHYPMQQVLEDLYAIWDWILTEKLHIPRSERNLYSAILVLPESFDNREIKEMLSIVLRDLR---FAS 267 (598)
Q Consensus 191 l~~Pi~~G~~n~~~~~s~~~~~~dle~i~~~~l~~~L~i~~~~~~~y~~VLvip~~~~~~~vr~l~ellfe~~~---f~~ 267 (598)
.+.|+.....- |-+.+..|.+.-| ++-++.|.+-.. -+|+||-..--+..-+++++.|=...| +..
T Consensus 50 ~fTPl~~~~~I---------D~~al~~iv~~eY-~~Agi~p~~I~T-GAVIITGETArKeNA~~v~~~Ls~~aGDFVVAT 118 (473)
T PF06277_consen 50 YFTPLLSQTEI---------DAEALKEIVEEEY-RKAGITPEDIDT-GAVIITGETARKENAREVLHALSGFAGDFVVAT 118 (473)
T ss_pred cccCCCCCCcc---------CHHHHHHHHHHHH-HHcCCCHHHCcc-ccEEEecchhhhhhHHHHHHHHHHhcCCEEEEc
Confidence 45677753333 6889999999998 568898865421 178888665555444567777765554 222
Q ss_pred EeeehhhHHHHhhcCCc--------eEEEEEeCCCcEEEEEeeCCeeeccCcEEeccccc
Q 007563 268 AVVHQEGLAAVFGNGLS--------TACVVNMGAQVTSVICVEDGVALPNTEKTLPFGGE 319 (598)
Q Consensus 268 v~~~qesv~a~fgaG~~--------sa~VVDiGa~~TsV~pV~dG~~l~~s~~~l~~GG~ 319 (598)
.-=--||+.|..|+|.. +-+=+|||..+|.++-..+|.++.. -.+++||+
T Consensus 119 AGPdLEsiiAgkGsGA~~~S~~~~~~V~NiDIGGGTtN~avf~~G~v~~T--~cl~IGGR 176 (473)
T PF06277_consen 119 AGPDLESIIAGKGSGAAALSKEHHTVVANIDIGGGTTNIAVFDNGEVIDT--ACLDIGGR 176 (473)
T ss_pred cCCCHHHHHhccCccHHHHhhhhCCeEEEEEeCCCceeEEEEECCEEEEE--EEEeeccE
Confidence 22236899999999852 3444799999999999999999954 45899997
No 54
>PF06406 StbA: StbA protein; InterPro: IPR009440 This entry represents bacterial plasmid segregation proteins ParM and StbA []. They are involved in the control of plasmid partition and required for the accurate segregation of the plasmid. ; PDB: 3IKY_C 3IKU_I 2ZGZ_B 1MWM_A 1MWK_A 2ZHC_A 2ZGY_A 2QU4_A.
Probab=90.54 E-value=0.3 Score=51.58 Aligned_cols=70 Identities=21% Similarity=0.292 Sum_probs=50.3
Q ss_pred hcCCCeEeeehhhHHHHhhc-----CCceEEEEEeCCCcEEEEEeeCCeeec-cCcEEeccccccChHHHHHHHHHHHHh
Q 007563 262 DLRFASAVVHQEGLAAVFGN-----GLSTACVVNMGAQVTSVICVEDGVALP-NTEKTLPFGGEVQILDISRCLLWTQRH 335 (598)
Q Consensus 262 ~~~f~~v~~~qesv~a~fga-----G~~sa~VVDiGa~~TsV~pV~dG~~l~-~s~~~l~~GG~~~~~dit~~l~~lL~~ 335 (598)
.+.+..|.+.+|+++|.|.. ...+.+|||||+.+|.++-|.++.... .+....+.|-. .+.+.+.+.|..
T Consensus 137 ~i~I~~V~V~PQ~~~A~~~~~~~~~~~~~~lVVDIGG~T~Dv~~v~~~~~~~~~~~~~~~~Gvs----~~~~~I~~~l~~ 212 (318)
T PF06406_consen 137 TITIKDVEVFPQSVGAVFDALMDLDEDESVLVVDIGGRTTDVAVVRGGLPDISKCSGTPEIGVS----DLYDAIAQALRS 212 (318)
T ss_dssp --EEEEEEEEESSHHHHHHHHHTS-TTSEEEEEEE-SS-EEEEEEEGGG--EEEEEEETTSSTH----HHHHHHHHHTT-
T ss_pred eEEEeeEEEEcccHHHHHHHHHhhcccCcEEEEEcCCCeEEeeeecCCccccchhccCCchhHH----HHHHHHHHHHHH
Confidence 34477999999999999875 235789999999999999888765433 33344578888 999999887754
No 55
>KOG0101 consensus Molecular chaperones HSP70/HSC70, HSP70 superfamily [Posttranslational modification, protein turnover, chaperones]
Probab=85.04 E-value=3.1 Score=47.38 Aligned_cols=89 Identities=20% Similarity=0.320 Sum_probs=66.4
Q ss_pred eEEecCCCCCcHHHHHHHHHHHHhcCCCeEeeehhhHHHHhhcCCc-------eEEEEEeCCCcEEEEEe--eCCe-eec
Q 007563 239 AILVLPESFDNREIKEMLSIVLRDLRFASAVVHQEGLAAVFGNGLS-------TACVVNMGAQVTSVICV--EDGV-ALP 308 (598)
Q Consensus 239 ~VLvip~~~~~~~vr~l~ellfe~~~f~~v~~~qesv~a~fgaG~~-------sa~VVDiGa~~TsV~pV--~dG~-~l~ 308 (598)
+|+-+|..|+... +..+.-.-.-.|++.+-++.|+.||+.++|+. +-||.|.|+....|+.+ .+|. .+.
T Consensus 146 aviTVPa~F~~~Q-r~at~~A~~iaGl~vlrii~EPtAaalAygl~k~~~~~~~VlI~DlGggtfdvs~l~i~gG~~~vk 224 (620)
T KOG0101|consen 146 AVVTVPAYFNDSQ-RAATKDAALIAGLNVLRIINEPTAAALAYGLDKKVLGERNVLIFDLGGGTFDVSVLSLEGGIFEVK 224 (620)
T ss_pred EEEEecCCcCHHH-HHHHHHHHHhcCCceeeeecchHHHHHHhhccccccceeeEEEEEcCCCceeeeeEEeccchhhhh
Confidence 5677776676654 45566666678999999999999999998854 45999999999988887 4553 233
Q ss_pred cCcEEeccccccChHHHHHHHHHH
Q 007563 309 NTEKTLPFGGEVQILDISRCLLWT 332 (598)
Q Consensus 309 ~s~~~l~~GG~~~~~dit~~l~~l 332 (598)
.+.-..+.||. |+++.|...
T Consensus 225 at~gd~~lGGe----df~~~l~~h 244 (620)
T KOG0101|consen 225 ATAGDTHLGGE----DFDNKLVNH 244 (620)
T ss_pred hhcccccccch----hhhHHHHHH
Confidence 34445789999 988877653
No 56
>PF08841 DDR: Diol dehydratase reactivase ATPase-like domain; InterPro: IPR009191 Diol dehydratase (propanediol dehydratase) and glycerol dehydratase undergo concomitant, irreversible inactivation by glycerol during catalysis [, ]. This inactivation is mechanism-based and involves cleavage of the Co-C bond of the cobalamin cofactor, coenzyme B12 (AdoCbl), forming 5 -deoxyadenosine and a modified coenzyme []. Irreversible inactivation of the enzyme results from tight binding to the modified, inactive cobalamin [, ]. The glycerol-inactivated enzyme undergoes rapid reactivation in the presence of free AdoCbl, ATP, and Mg 2+ (or Mn 2+ ) []. Reactivation is mediated by a complex of two proteins: a large subunit (DdrA/PduG) and a small subunit (DdrB/PduH, IPR009192 from INTERPRO) [, ]. The two subunits of the reactivating factor for glycerol dehydratase have been shown to form a tight complex that serves to reactivate the glycerol-inactivated holoenzyme, as well as O2-inactivated holoenzyme in vitro []. It is believed that this reactivating factor replaces an enzyme-bound, adenine-lacking inactive cobalamin with a free, adenine-containing active cobalamin []. PduG and PduH, part of the propanediol utilization pdu operon, are believed to have a similar function in the reactivation of propanediol dehydratase. PduG was also proposed, on the basis of genetic tests, to be a cobalamin adenosyltransferase involved in the conversion of inactive cobalamin (B12) to AdoCbl []. However, this function has since been shown to belong to another protein, PduO (IPR009221 from INTERPRO, IPR012228 from INTERPRO) []. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO for more details on the propanediol utilization pathway and pdu operon, as well as on the glycerol breakdown pathway.; PDB: 1NBW_C 2D0P_C 2D0O_C.
Probab=83.75 E-value=5.1 Score=41.20 Aligned_cols=92 Identities=16% Similarity=0.176 Sum_probs=64.4
Q ss_pred cHHHHHHHHHHHHhcCCCeEeeehhhHHHHhhcCCc-----eEEEEEeCCCcEEEEEe-eCCeeeccCcEEeccccccCh
Q 007563 249 NREIKEMLSIVLRDLRFASAVVHQEGLAAVFGNGLS-----TACVVNMGAQVTSVICV-EDGVALPNTEKTLPFGGEVQI 322 (598)
Q Consensus 249 ~~~vr~l~ellfe~~~f~~v~~~qesv~a~fgaG~~-----sa~VVDiGa~~TsV~pV-~dG~~l~~s~~~l~~GG~~~~ 322 (598)
+-..+.+.+.|=+++|++.-.-.-|+-+|..|+=.+ --.|+|+|+.+|..+-+ .||.+. .+.+-=+|+
T Consensus 94 ~l~M~~iA~~l~~~lgv~V~igGvEAemAi~GALTTPGt~~PlaIlDmG~GSTDAsii~~~g~v~---~iHlAGAG~--- 167 (332)
T PF08841_consen 94 KLQMQMIADELEEELGVPVEIGGVEAEMAILGALTTPGTDKPLAILDMGGGSTDASIINRDGEVT---AIHLAGAGN--- 167 (332)
T ss_dssp S-TCHHHHHHHHHHHTSEEEEECEHHHHHHHHHTTSTT--SSEEEEEE-SSEEEEEEE-TTS-EE---EEEEE-SHH---
T ss_pred cccHHHHHHHHHHHHCCceEEccccHHHHHhcccCCCCCCCCeEEEecCCCcccHHHhCCCCcEE---EEEecCCch---
Confidence 334446888888999999999999999999998543 25789999999998888 455553 345566677
Q ss_pred HHHHHHHHHHHHhcCCCCCcccccccchhhHHHHHHHHHH
Q 007563 323 LDISRCLLWTQRHHQTWPQIRTDILTKAMDLLMLNRIKES 362 (598)
Q Consensus 323 ~dit~~l~~lL~~~~~~p~~~~~~l~~~~d~~l~e~lKe~ 362 (598)
-+|-.+..-| + | .|+.++|+||..
T Consensus 168 -mVTmlI~sEL---G---------l---~d~~lAE~IKky 191 (332)
T PF08841_consen 168 -MVTMLINSEL---G---------L---EDRELAEDIKKY 191 (332)
T ss_dssp -HHHHHHHHHC---T-------------S-HHHHHHHHHS
T ss_pred -hhHHHHHHhh---C---------C---CCHHHHHHhhhc
Confidence 6665554332 2 2 378999999974
No 57
>KOG0104 consensus Molecular chaperones GRP170/SIL1, HSP70 superfamily [Posttranslational modification, protein turnover, chaperones]
Probab=83.24 E-value=5.6 Score=45.89 Aligned_cols=92 Identities=18% Similarity=0.258 Sum_probs=65.9
Q ss_pred eEEecCCCCCcHHHHHHHHHHHHhcCCCeEeeehhhHHHHhhcCCc----------eEEEEEeCCCcEEEEEee------
Q 007563 239 AILVLPESFDNREIKEMLSIVLRDLRFASAVVHQEGLAAVFGNGLS----------TACVVNMGAQVTSVICVE------ 302 (598)
Q Consensus 239 ~VLvip~~~~~~~vr~l~ellfe~~~f~~v~~~qesv~a~fgaG~~----------sa~VVDiGa~~TsV~pV~------ 302 (598)
+|+-+|+.|+..+.+-+++-. +-.|..-+.++.+..+++..+|.. .-+|-|+|+.+|+.+-|.
T Consensus 161 ~ViTVP~~F~qaeR~all~Aa-~iagl~vLqLind~~a~Al~ygv~rRk~i~~~~q~~i~YDMGs~sT~Ativsy~~v~~ 239 (902)
T KOG0104|consen 161 MVITVPPFFNQAERRALLQAA-QIAGLNVLQLINDGTAVALNYGVFRRKEINETPQHYIFYDMGSGSTSATIVSYQLVKT 239 (902)
T ss_pred eEEeCCcccCHHHHHHHHHHH-HhcCchhhhhhccchHHHhhhhhhccccCCCCceEEEEEecCCCceeEEEEEEEeecc
Confidence 578888888887755555433 456888899999999999877753 479999999999998884
Q ss_pred --CCeeec-----cCcEEeccccccChHHHHHHHHHHHHh
Q 007563 303 --DGVALP-----NTEKTLPFGGEVQILDISRCLLWTQRH 335 (598)
Q Consensus 303 --dG~~l~-----~s~~~l~~GG~~~~~dit~~l~~lL~~ 335 (598)
.|..++ .......+||. .+|..|...|..
T Consensus 240 k~~g~~~p~i~~~gvGfd~tLGG~----e~~~rLr~~l~~ 275 (902)
T KOG0104|consen 240 KEQGGKQPQIQVLGVGFDRTLGGL----EMTMRLRDHLAN 275 (902)
T ss_pred ccccCccceEEEEeeccCCccchH----HHHHHHHHHHHH
Confidence 221111 11223467899 999988877643
No 58
>PF01968 Hydantoinase_A: Hydantoinase/oxoprolinase; InterPro: IPR002821 This family includes the enzymes hydantoinase and oxoprolinase (3.5.2.9 from EC). Both reactions involve the hydrolysis of 5-membered rings via hydrolysis of their internal imide bonds [].; GO: 0016787 hydrolase activity; PDB: 3C0B_C 3CET_B.
Probab=82.72 E-value=1.6 Score=45.44 Aligned_cols=32 Identities=34% Similarity=0.434 Sum_probs=23.2
Q ss_pred HHh-hcCCceEEEEEeCCCcEEEEEeeCCeeec
Q 007563 277 AVF-GNGLSTACVVNMGAQVTSVICVEDGVALP 308 (598)
Q Consensus 277 a~f-gaG~~sa~VVDiGa~~TsV~pV~dG~~l~ 308 (598)
+++ -.|..++++||||..+|.|++|.||.+..
T Consensus 69 a~~~~~g~~~~i~vDmGGTTtDi~~i~~G~p~~ 101 (290)
T PF01968_consen 69 AAARLTGLENAIVVDMGGTTTDIALIKDGRPEI 101 (290)
T ss_dssp HHH--HT-SSEEEEEE-SS-EEEEEEETTEE--
T ss_pred hhhhcCCCCCEEEEeCCCCEEEEEEEECCeeec
Confidence 444 55788999999999999999999999863
No 59
>PF02541 Ppx-GppA: Ppx/GppA phosphatase family; InterPro: IPR003695 Exopolyphosphate phosphatase (Ppx) 3.6.1.11 from EC and guanosine pentaphosphate phosphatase (GppA) 3.6.1.40 from EC belong to the sugar kinase/actin/hsp70 superfamily [].; PDB: 3MDQ_A 1U6Z_A 1T6D_B 2J4R_B 1T6C_A 2FLO_B 3CER_B 3HI0_A.
Probab=82.40 E-value=2.2 Score=44.10 Aligned_cols=70 Identities=19% Similarity=0.361 Sum_probs=47.6
Q ss_pred HHHHHHHHhcCCCeEeee---hhhHHHHhh----c-CCceEEEEEeCCCcEEEEEeeCCeeeccCcEEeccccccChHHH
Q 007563 254 EMLSIVLRDLRFASAVVH---QEGLAAVFG----N-GLSTACVVNMGAQVTSVICVEDGVALPNTEKTLPFGGEVQILDI 325 (598)
Q Consensus 254 ~l~ellfe~~~f~~v~~~---qesv~a~fg----a-G~~sa~VVDiGa~~TsV~pV~dG~~l~~s~~~l~~GG~~~~~di 325 (598)
++++-+.+..|++ +-++ .|+-++..| . ....++|||||.++|.++.+.+|.+. ....+++|.- .+
T Consensus 75 ~~~~~i~~~tGi~-i~iIsgeeEa~l~~~gv~~~l~~~~~~lviDIGGGStEl~~~~~~~~~--~~~Sl~lG~v----rl 147 (285)
T PF02541_consen 75 EFLDRIKKETGID-IEIISGEEEARLSFLGVLSSLPPDKNGLVIDIGGGSTELILFENGKVV--FSQSLPLGAV----RL 147 (285)
T ss_dssp HHHHHHHHHHSS--EEEE-HHHHHHHHHHHHHHHSTTTSSEEEEEEESSEEEEEEEETTEEE--EEEEES--HH----HH
T ss_pred HHHHHHHHHhCCc-eEEecHHHHHHHHHHHHHhhccccCCEEEEEECCCceEEEEEECCeee--EeeeeehHHH----HH
Confidence 4677777777765 3333 333333322 2 55689999999999999999999987 4568999998 77
Q ss_pred HHHHH
Q 007563 326 SRCLL 330 (598)
Q Consensus 326 t~~l~ 330 (598)
++.+.
T Consensus 148 ~e~~~ 152 (285)
T PF02541_consen 148 TERFF 152 (285)
T ss_dssp HHHHS
T ss_pred HHHHh
Confidence 77663
No 60
>PF14450 FtsA: Cell division protein FtsA; PDB: 1E4F_T 4A2B_A 4A2A_A 1E4G_T.
Probab=82.21 E-value=4.7 Score=36.05 Aligned_cols=58 Identities=22% Similarity=0.278 Sum_probs=39.2
Q ss_pred EEEEeCCCcEEEEEeeCCeeeccCcEEeccc--------cccChHHHH--HHHHHHHHhcCCCCCcccccccchhhHHHH
Q 007563 287 CVVNMGAQVTSVICVEDGVALPNTEKTLPFG--------GEVQILDIS--RCLLWTQRHHQTWPQIRTDILTKAMDLLML 356 (598)
Q Consensus 287 ~VVDiGa~~TsV~pV~dG~~l~~s~~~l~~G--------G~~~~~dit--~~l~~lL~~~~~~p~~~~~~l~~~~d~~l~ 356 (598)
++||||+++|.++-..+|.... ...+++| |. +|| +-+.+-++. ....+
T Consensus 2 ~~iDiGs~~~~~~i~~~~~~~~--~~vl~~g~~~s~gi~~g----~Itd~~~i~~~i~~----------------a~~~A 59 (120)
T PF14450_consen 2 VVIDIGSSKTKVAIAEDGSDGY--IRVLGVGEVPSKGIKGG----HITDIEDISKAIKI----------------AIEEA 59 (120)
T ss_dssp EEEEE-SSSEEEEEEETTEEEE--EEEES----------HH----HHH--HHHHHHHT------------------HHHH
T ss_pred EEEEcCCCcEEEEEEEeCCCCc--EEEEEEecccccccCCC----EEEEHHHHHHHHHH----------------HHHHH
Confidence 7899999999999988877663 5678999 99 999 777665532 23457
Q ss_pred HHH-HHHceec
Q 007563 357 NRI-KESYCEI 366 (598)
Q Consensus 357 e~l-Ke~~c~v 366 (598)
|++ |.++..+
T Consensus 60 E~~~k~~i~~v 70 (120)
T PF14450_consen 60 ERLAKCEIGSV 70 (120)
T ss_dssp HHH-HHHH--S
T ss_pred HHHhCCeeeEE
Confidence 777 7776544
No 61
>TIGR03123 one_C_unchar_1 probable H4MPT-linked C1 transfer pathway protein. This protein family was identified, by the method of partial phylogenetic profiling, as related to the use of tetrahydromethanopterin (H4MPT) as a C-1 carrier. Characteristic markers of the H4MPT-linked C1 transfer pathway include formylmethanofuran dehydrogenase subunits, methenyltetrahydromethanopterin cyclohydrolase, etc. Tetrahydromethanopterin, a tetrahydrofolate analog, occurs in methanogenic archaea, bacterial methanotrophs, planctomycetes, and a few other lineages.
Probab=70.67 E-value=4.7 Score=42.52 Aligned_cols=31 Identities=23% Similarity=0.409 Sum_probs=26.2
Q ss_pred hhcCCceEEEEEeCCCcEEEEEeeCCeeecc
Q 007563 279 FGNGLSTACVVNMGAQVTSVICVEDGVALPN 309 (598)
Q Consensus 279 fgaG~~sa~VVDiGa~~TsV~pV~dG~~l~~ 309 (598)
++.....+++||||..+|.|++|.+|.+...
T Consensus 123 la~~~~~~I~~DmGGTTtDi~~i~~G~p~~~ 153 (318)
T TIGR03123 123 IAKRIPECLFVDMGSTTTDIIPIIDGEVAAK 153 (318)
T ss_pred HHhcCCCEEEEEcCccceeeEEecCCEeeee
Confidence 3345678999999999999999999998743
No 62
>KOG0102 consensus Molecular chaperones mortalin/PBP74/GRP75, HSP70 superfamily [Posttranslational modification, protein turnover, chaperones]
Probab=70.22 E-value=30 Score=38.88 Aligned_cols=90 Identities=21% Similarity=0.236 Sum_probs=66.0
Q ss_pred EecCCCCCcHHHHHHHHHHHHhcCCCeEeeehhhHHHHhhcCCc-----eEEEEEeCCCcEEEE--EeeCCeee-ccCcE
Q 007563 241 LVLPESFDNREIKEMLSIVLRDLRFASAVVHQEGLAAVFGNGLS-----TACVVNMGAQVTSVI--CVEDGVAL-PNTEK 312 (598)
Q Consensus 241 Lvip~~~~~~~vr~l~ellfe~~~f~~v~~~qesv~a~fgaG~~-----sa~VVDiGa~~TsV~--pV~dG~~l-~~s~~ 312 (598)
+++-+.|-+...|+.+.-+..-.|-..+-++.++-+|+.++|+. +-.|-|+|.+...|+ -|++|+.. ..+-.
T Consensus 164 vvtvpAyfndsqRqaTkdag~iagl~vlrvineptaaalaygld~k~~g~iaV~dLgggtfdisilei~~gvfevksTng 243 (640)
T KOG0102|consen 164 VITVPAYFNDSQRQATKDAGQIAGLNVLRVINEPTAAALAYGLDKKEDGVIAVFDLGGGTFDISILEIEDGVFEVKSTNG 243 (640)
T ss_pred eeccHHHHhHHHHHHhHhhhhhccceeeccCCccchhHHhhcccccCCCceEEEEcCCceeeeeeehhccceeEEEeccC
Confidence 34444554444566777777778888999999999999998875 468999998876554 45788643 33445
Q ss_pred EeccccccChHHHHHHHHHHHH
Q 007563 313 TLPFGGEVQILDISRCLLWTQR 334 (598)
Q Consensus 313 ~l~~GG~~~~~dit~~l~~lL~ 334 (598)
....||. |++.++..++-
T Consensus 244 dtflgge----dfd~~~~~~~v 261 (640)
T KOG0102|consen 244 DTHLGGE----DFDNALVRFIV 261 (640)
T ss_pred ccccChh----HHHHHHHHHHH
Confidence 6778999 99999987654
No 63
>TIGR03192 benz_CoA_bzdQ benzoyl-CoA reductase, bzd-type, Q subunit. Members of this family are the Q subunit of one of two related types of four-subunit ATP-dependent benzoyl-CoA reductase. This enzyme system catalyzes the dearomatization of benzoyl-CoA, a common intermediate in pathways for the degradation for a number of different aromatic compounds, such as phenol and toluene.
Probab=64.54 E-value=2.7 Score=43.75 Aligned_cols=51 Identities=16% Similarity=0.189 Sum_probs=40.0
Q ss_pred HHhhcCeEEecCCCCCCChHHHHHHHHHhhCCCCCCcceEEEcCCCCCCccceEeceeeecc
Q 007563 494 RKLFCSIQLIGGVALTGGLIPAVEERVLHAIPSNEAIDMVEVLQSRTNPTYVSWKGGAVLGI 555 (598)
Q Consensus 494 ~~L~~nIvLvGG~S~ipG~~~rL~~eL~~~~p~~~~i~~V~v~~~~~dp~~~aWkGgSIla~ 555 (598)
..+-..|+++||.++-+|+...|+++|.. +|.++ +.+|++..=.||+++|.
T Consensus 237 ~~i~~~v~~~GGva~N~~l~~al~~~Lg~---------~v~~~--p~~p~~~GAlGAAL~A~ 287 (293)
T TIGR03192 237 IGVEEGFFITGGIAKNPGVVKRIERILGI---------KAVDT--KIDSQIAGALGAALFGY 287 (293)
T ss_pred cCCCCCEEEECcccccHHHHHHHHHHhCC---------CceeC--CCCccHHHHHHHHHHHH
Confidence 34556799999999999999999998852 22323 34789999999999883
No 64
>TIGR02261 benz_CoA_red_D benzoyl-CoA reductase, bcr type, subunit D. This model describes the D subunit of benzoyl-CoA reductase, a 4-subunit enzyme. Many aromatic compounds are metabolized by way of benzoyl-CoA. This family shows sequence similarity to the A subunit (TIGR02259) and to the 2-hydroxyglutaryl-CoA dehydratase alpha chain.
Probab=64.09 E-value=4.7 Score=41.36 Aligned_cols=50 Identities=26% Similarity=0.434 Sum_probs=37.5
Q ss_pred cCeEEecCCCCCCChHHHHHHHHHhhCCCCCCcceEEEcCCCCCCccceEeceeeec
Q 007563 498 CSIQLIGGVALTGGLIPAVEERVLHAIPSNEAIDMVEVLQSRTNPTYVSWKGGAVLG 554 (598)
Q Consensus 498 ~nIvLvGG~S~ipG~~~rL~~eL~~~~p~~~~i~~V~v~~~~~dp~~~aWkGgSIla 554 (598)
.+|+++||.++-+|+.+.|+++|... . ..+.|.. +.+|++..=.||+++|
T Consensus 213 ~~v~~~GGva~n~~~~~~le~~l~~~-~-----~~~~v~~-~~~~q~~gAlGAAl~~ 262 (262)
T TIGR02261 213 GTVLCTGGLALDAGLLEALKDAIQEA-K-----MAVAAEN-HPDAIYAGAIGAALWG 262 (262)
T ss_pred CcEEEECcccccHHHHHHHHHHhccC-C-----cceEecC-CCcchHHHHHHHHHcC
Confidence 46999999999999999999999532 1 1233332 3578898888988765
No 65
>COG4819 EutA Ethanolamine utilization protein, possible chaperonin protecting lyase from inhibition [Amino acid transport and metabolism]
Probab=63.88 E-value=25 Score=37.16 Aligned_cols=105 Identities=19% Similarity=0.193 Sum_probs=70.4
Q ss_pred cHHHHHHHHHHHhhhhcCCCCCCCCccceEEecCCCCCcHHHHHHHHHHH---HhcCCCeEeeehhhHHHHhhcCCc---
Q 007563 211 VLEDLYAIWDWILTEKLHIPRSERNLYSAILVLPESFDNREIKEMLSIVL---RDLRFASAVVHQEGLAAVFGNGLS--- 284 (598)
Q Consensus 211 ~~~dle~i~~~~l~~~L~i~~~~~~~y~~VLvip~~~~~~~vr~l~ellf---e~~~f~~v~~~qesv~a~fgaG~~--- 284 (598)
+-+.+..+...-+ ..-+|.|+... .-+|+++-..--++.-+..+..|= -+|=+...-=.-||+-|--|+|..
T Consensus 63 d~~alk~~v~eeY-~~AGi~pesi~-sGAvIITGEtArk~NA~~vl~alSg~aGDFVVAtAGPdLESiIAGkGaGA~t~S 140 (473)
T COG4819 63 DEAALKKLVLEEY-QAAGIAPESID-SGAVIITGETARKRNARPVLMALSGSAGDFVVATAGPDLESIIAGKGAGAQTLS 140 (473)
T ss_pred cHHHHHHHHHHHH-HHcCCChhccc-cccEEEeccccccccchHHHHHhhhcccceEEEecCCCHHHHhccCCccccchh
Confidence 5667888887776 45788876532 126888766544443334333332 333344444456788888888853
Q ss_pred ---eEEE--EEeCCCcEEEEEeeCCeeeccCcEEeccccc
Q 007563 285 ---TACV--VNMGAQVTSVICVEDGVALPNTEKTLPFGGE 319 (598)
Q Consensus 285 ---sa~V--VDiGa~~TsV~pV~dG~~l~~s~~~l~~GG~ 319 (598)
++|| +|||..+|..+-.+-|.++..+ .|++||+
T Consensus 141 eqr~t~v~NlDIGGGTtN~slFD~Gkv~dTa--CLdiGGR 178 (473)
T COG4819 141 EQRLTRVLNLDIGGGTTNYSLFDAGKVSDTA--CLDIGGR 178 (473)
T ss_pred hhhceEEEEEeccCCccceeeecccccccce--eeecCcE
Confidence 3444 6999999999999999988654 5999998
No 66
>TIGR03706 exo_poly_only exopolyphosphatase. It appears that a single enzyme may act as both exopolyphosphatase (Ppx) and guanosine pentaphosphate phosphohydrolase (GppA) in a number of species. Members of the seed alignment use to define this exception-level model are encoded adjacent to a polyphosphate kinase 1 gene, and the trusted cutoff is set high enough (425) that no genome has a second hit. Therefore all members may be presumed to at least share exopolyphospatase activity, and may lack GppA activity. GppA acts in the stringent response.
Probab=63.78 E-value=9.6 Score=39.78 Aligned_cols=40 Identities=23% Similarity=0.295 Sum_probs=33.9
Q ss_pred eEEEEEeCCCcEEEEEeeCCeeeccCcEEeccccccChHHHHHHHH
Q 007563 285 TACVVNMGAQVTSVICVEDGVALPNTEKTLPFGGEVQILDISRCLL 330 (598)
Q Consensus 285 sa~VVDiGa~~TsV~pV~dG~~l~~s~~~l~~GG~~~~~dit~~l~ 330 (598)
.++|||||.++|.++.+.+|.+. ....+++|.- .+++.|.
T Consensus 126 ~~~v~DiGGGSte~~~~~~~~~~--~~~Sl~lG~v----rl~e~f~ 165 (300)
T TIGR03706 126 DGLVVDIGGGSTELILGKDFEPG--EGVSLPLGCV----RLTEQFF 165 (300)
T ss_pred CcEEEEecCCeEEEEEecCCCEe--EEEEEccceE----EhHHhhC
Confidence 46999999999999999988766 4568999998 8887764
No 67
>TIGR02259 benz_CoA_red_A benzoyl-CoA reductase, bcr type, subunit A. This model describes A, or gamma, subunit of the bcr type of benzoyl-CoA reductase, a 4-subunit enzyme. Many aromatic compounds are metabolized by way of benzoyl-CoA. This family shows strong sequence similarity to the 2-hydroxyglutaryl-CoA dehydratase alpha chain and to subunits of different types of benzoyl-CoA reductase (such as the bzd type).
Probab=63.24 E-value=5.4 Score=43.19 Aligned_cols=53 Identities=11% Similarity=0.214 Sum_probs=40.5
Q ss_pred HhhcCeEEecCCCCCCChHHHHHHHHHhhCCCCCCcceEEEcCCCCCCccceEeceeeec
Q 007563 495 KLFCSIQLIGGVALTGGLIPAVEERVLHAIPSNEAIDMVEVLQSRTNPTYVSWKGGAVLG 554 (598)
Q Consensus 495 ~L~~nIvLvGG~S~ipG~~~rL~~eL~~~~p~~~~i~~V~v~~~~~dp~~~aWkGgSIla 554 (598)
.+-..|+++||.++-+||...|++.|....+. .+|.| +.+|++..=+||+++|
T Consensus 380 ~i~~~VvftGGvA~N~gvv~aLe~~L~~~~~~----~~V~V---p~~pq~~GALGAAL~a 432 (432)
T TIGR02259 380 GITDQFTFTGGVAKNEAAVKELRKLIKENYGE----VQINI---DPDSIYTGALGASEFA 432 (432)
T ss_pred CCCCCEEEECCccccHHHHHHHHHHHccccCC----CeEec---CCCccHHHHHHHHHhC
Confidence 34568999999999999999999999754331 12333 3578999999998875
No 68
>PRK11031 guanosine pentaphosphate phosphohydrolase; Provisional
Probab=62.89 E-value=26 Score=39.38 Aligned_cols=39 Identities=18% Similarity=0.165 Sum_probs=32.9
Q ss_pred eEEEEEeCCCcEEEEEeeCCeeeccCcEEeccccccChHHHHHHH
Q 007563 285 TACVVNMGAQVTSVICVEDGVALPNTEKTLPFGGEVQILDISRCL 329 (598)
Q Consensus 285 sa~VVDiGa~~TsV~pV~dG~~l~~s~~~l~~GG~~~~~dit~~l 329 (598)
.++|||||.++|.++.+.+|.+. ....+++|.- -+++.|
T Consensus 133 ~~lviDIGGGStEl~~~~~~~~~--~~~Sl~lG~v----rl~e~f 171 (496)
T PRK11031 133 QRLVVDIGGASTELVTGTGAQAT--SLFSLSMGCV----TWLERY 171 (496)
T ss_pred CEEEEEecCCeeeEEEecCCcee--eeeEEeccch----HHHHHh
Confidence 48999999999999999998876 4568999998 777654
No 69
>TIGR03286 methan_mark_15 putative methanogenesis marker protein 15. Members of this protein family, to date, are found in a completed prokaryotic genome if and only if the species is one of the archaeal methanogens. The exact function is unknown, but likely is linked to methanogenesis or a process closely connected to it. Related proteins include the BadF/BadG/BcrA/BcrD ATPase family (pfam01869), which includes an activator for (R)-2-hydroxyglutaryl-CoA dehydratase.
Probab=57.46 E-value=3.9 Score=44.40 Aligned_cols=68 Identities=21% Similarity=0.263 Sum_probs=46.4
Q ss_pred CCHHHHHHHHHhcCCChhhHHHhhcCeEEecCCCCCCChHHHHHHHHHhhCCCCCCcceEEEcCCCCCCccceEeceeee
Q 007563 474 IGLAEAVTSSILSTGRIDLQRKLFCSIQLIGGVALTGGLIPAVEERVLHAIPSNEAIDMVEVLQSRTNPTYVSWKGGAVL 553 (598)
Q Consensus 474 ~~L~~aI~~sI~~~~~~d~r~~L~~nIvLvGG~S~ipG~~~rL~~eL~~~~p~~~~i~~V~v~~~~~dp~~~aWkGgSIl 553 (598)
.+|..+|.+-+... .-.+..+-..|+++||.++.+|+...|++.|.. +|.+. .+|++..=.||+++
T Consensus 335 AGl~~SIa~rv~~~--l~~~~~i~~~VvftGGva~N~gvv~ale~~Lg~---------~iivP---e~pq~~GAiGAAL~ 400 (404)
T TIGR03286 335 AAACHSVAEQVYEQ--QLQEIDVREPVILVGGTSLIEGLVKALGDLLGI---------EVVVP---EYSQYIGAVGAALL 400 (404)
T ss_pred HHHHHHHHHHHHHH--HhhcCCCCCcEEEECChhhhHHHHHHHHHHhCC---------cEEEC---CcccHHHHHHHHHH
Confidence 35555555544320 011223445599999999999999999998852 33442 47899999999998
Q ss_pred cc
Q 007563 554 GI 555 (598)
Q Consensus 554 a~ 555 (598)
|+
T Consensus 401 A~ 402 (404)
T TIGR03286 401 AS 402 (404)
T ss_pred hc
Confidence 74
No 70
>PF08735 DUF1786: Putative pyruvate format-lyase activating enzyme (DUF1786); InterPro: IPR014846 This family is annotated as pyruvate formate-lyase activating enzyme (1.97.1.4 from EC) in UniProt. It is not clear where this annotation comes from.
Probab=55.63 E-value=23 Score=36.09 Aligned_cols=46 Identities=33% Similarity=0.349 Sum_probs=37.8
Q ss_pred HhcCCCeEeeehhhHHHHhhcCC-------ceEEEEEeCCCcEEEEEeeCCeee
Q 007563 261 RDLRFASAVVHQEGLAAVFGNGL-------STACVVNMGAQVTSVICVEDGVAL 307 (598)
Q Consensus 261 e~~~f~~v~~~qesv~a~fgaG~-------~sa~VVDiGa~~TsV~pV~dG~~l 307 (598)
...+... .++....||.+|+=. ...||||||-+.|-.+-|.+|.+.
T Consensus 138 ~~~~~~~-~vmDTg~AAvlGal~d~~v~~~~~~~~vniGN~HTlaa~v~~~rI~ 190 (254)
T PF08735_consen 138 GGAGYDE-VVMDTGPAAVLGALCDPEVSSREGIIVVNIGNGHTLAALVKDGRIY 190 (254)
T ss_pred ccCCCCc-eEecCHHHHHhhhhcChhhhccCCeEEEEeCCccEEEEEEeCCEEE
Confidence 3444444 899999999998743 468999999999999999999886
No 71
>COG1548 Predicted transcriptional regulator/sugar kinase [Transcription / Carbohydrate transport and metabolism]
Probab=52.26 E-value=9.6 Score=38.76 Aligned_cols=23 Identities=35% Similarity=0.637 Sum_probs=21.0
Q ss_pred ceEEEEEeCCCcEEEEEeeCCee
Q 007563 284 STACVVNMGAQVTSVICVEDGVA 306 (598)
Q Consensus 284 ~sa~VVDiGa~~TsV~pV~dG~~ 306 (598)
.+++.||+|..+|.|.||.+|..
T Consensus 130 dsci~VD~GSTTtDIIPi~~ge~ 152 (330)
T COG1548 130 DSCILVDMGSTTTDIIPIKDGEA 152 (330)
T ss_pred CceEEEecCCcccceEeecchhh
Confidence 47999999999999999999973
No 72
>TIGR00241 CoA_E_activ CoA-substrate-specific enzyme activase, putative. This domain may be involved in generating or regenerating the active sites of enzymes related to (R)-2-hydroxyglutaryl-CoA dehydratase and benzoyl-CoA reductase.
Probab=51.24 E-value=80 Score=31.79 Aligned_cols=99 Identities=16% Similarity=0.104 Sum_probs=57.8
Q ss_pred cHHHHHHHHHHHhhhhcCCCCCCCCccceEEecCCCCCcHHHHHHHHHHHHhcCCCeEeeehhhHHHHhh----cCCceE
Q 007563 211 VLEDLYAIWDWILTEKLHIPRSERNLYSAILVLPESFDNREIKEMLSIVLRDLRFASAVVHQEGLAAVFG----NGLSTA 286 (598)
Q Consensus 211 ~~~dle~i~~~~l~~~L~i~~~~~~~y~~VLvip~~~~~~~vr~l~ellfe~~~f~~v~~~qesv~a~fg----aG~~sa 286 (598)
.|+.+...+..++ +++++++.+.. .|.++ .+.+.. + .|- + .+++|-+|-+-| .+. ..
T Consensus 33 ~~~~~~~~l~~~~-~~~~~~~~~i~---~i~~T--g~~~~~----v--~~~--~----~~~~ei~~~~~g~~~~~~~-~~ 93 (248)
T TIGR00241 33 VIEETARAILEAL-KEAGIGLEPID---KIVAT--GYGRHK----V--GFA--D----KIVTEISCHGKGANYLAPE-AR 93 (248)
T ss_pred CHHHHHHHHHHHH-HHcCCChhhee---EEEEE--CCCccc----c--ccc--C----CceEEhhHHHHHHHHHCCC-CC
Confidence 6888888888887 56677655442 33333 222221 1 111 1 245555554433 333 34
Q ss_pred EEEEeCCCcEEEEEeeCCeeeccCc-EEeccccccChHHHHHHHHHH
Q 007563 287 CVVNMGAQVTSVICVEDGVALPNTE-KTLPFGGEVQILDISRCLLWT 332 (598)
Q Consensus 287 ~VVDiGa~~TsV~pV~dG~~l~~s~-~~l~~GG~~~~~dit~~l~~l 332 (598)
.|||||+|.|.+.-+.+|.+..-.. .....|+. ..++.+...
T Consensus 94 ~vidiGgqd~k~i~~~~g~~~~~~~n~~ca~Gtg----~f~e~~a~~ 136 (248)
T TIGR00241 94 GVIDIGGQDSKVIKIDDGKVDDFTMNDKCAAGTG----RFLEVTARR 136 (248)
T ss_pred EEEEecCCeeEEEEECCCcEeeeeecCccccccc----HHHHHHHHH
Confidence 5999999999999999998762111 13456766 666655543
No 73
>COG0248 GppA Exopolyphosphatase [Nucleotide transport and metabolism / Inorganic ion transport and metabolism]
Probab=49.99 E-value=14 Score=41.35 Aligned_cols=42 Identities=14% Similarity=0.214 Sum_probs=33.3
Q ss_pred CceEEEEEeCCCcEEEEEeeCCeeeccCcEEeccccccChHHHHHHHH
Q 007563 283 LSTACVVNMGAQVTSVICVEDGVALPNTEKTLPFGGEVQILDISRCLL 330 (598)
Q Consensus 283 ~~sa~VVDiGa~~TsV~pV~dG~~l~~s~~~l~~GG~~~~~dit~~l~ 330 (598)
...+||+|||.++|.++=+.+..+. ....+++|.- .+|+.+.
T Consensus 128 ~~~~lv~DIGGGStEl~~g~~~~~~--~~~Sl~~G~v----~lt~~~~ 169 (492)
T COG0248 128 KGDGLVIDIGGGSTELVLGDNFEIG--LLISLPLGCV----RLTERFF 169 (492)
T ss_pred CCCEEEEEecCCeEEEEEecCCccc--eeEEeecceE----Eeehhhc
Confidence 5689999999999999988766555 4567899987 6776554
No 74
>PRK10854 exopolyphosphatase; Provisional
Probab=45.92 E-value=30 Score=39.03 Aligned_cols=40 Identities=13% Similarity=0.184 Sum_probs=31.6
Q ss_pred ceEEEEEeCCCcEEEEEeeCCeeeccCcEEeccccccChHHHHHHH
Q 007563 284 STACVVNMGAQVTSVICVEDGVALPNTEKTLPFGGEVQILDISRCL 329 (598)
Q Consensus 284 ~sa~VVDiGa~~TsV~pV~dG~~l~~s~~~l~~GG~~~~~dit~~l 329 (598)
..++|||||.++|.++.+.+|.+.. ...+++|.- -+++.|
T Consensus 137 ~~~lvvDIGGGStEl~~~~~~~~~~--~~S~~lG~v----rl~e~f 176 (513)
T PRK10854 137 GRKLVIDIGGGSTELVIGENFEPIL--VESRRMGCV----SFAQLY 176 (513)
T ss_pred CCeEEEEeCCCeEEEEEecCCCeeE--eEEEeccee----eHHhhh
Confidence 3689999999999999999986553 345688887 777644
No 75
>PRK13317 pantothenate kinase; Provisional
Probab=40.89 E-value=14 Score=38.32 Aligned_cols=73 Identities=18% Similarity=0.078 Sum_probs=46.9
Q ss_pred CCHHHHHHHHHhcCCChhhHHHhhcCeEEec-CCCCCCChHHHHHHHHHhhCCCCCCcceEEEcCCCCCCccceEeceee
Q 007563 474 IGLAEAVTSSILSTGRIDLQRKLFCSIQLIG-GVALTGGLIPAVEERVLHAIPSNEAIDMVEVLQSRTNPTYVSWKGGAV 552 (598)
Q Consensus 474 ~~L~~aI~~sI~~~~~~d~r~~L~~nIvLvG-G~S~ipG~~~rL~~eL~~~~p~~~~i~~V~v~~~~~dp~~~aWkGgSI 552 (598)
.+|..+|.+.|...+-.-.|..-..+|+++| |.+..|++.+.|++.+... . .++.+ +.+|++..=.||++
T Consensus 200 asl~~~v~~~I~~lA~~~ar~~~~~~Ivf~G~gla~n~~l~~~l~~~l~~~--~----~~~~~---p~~~~~~gAlGAaL 270 (277)
T PRK13317 200 AGVIGLVGEVITTLSIQAAREKNIENIVYIGSTLTNNPLLQEIIESYTKLR--N----CTPIF---LENGGYSGAIGALL 270 (277)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCeEEEECcccccCHHHHHHHHHHHhcC--C----ceEEe---cCCCchhHHHHHHH
Confidence 3555666655544310112333447899999 6899999999999877521 0 12333 24789999999988
Q ss_pred ecc
Q 007563 553 LGI 555 (598)
Q Consensus 553 la~ 555 (598)
++.
T Consensus 271 ~a~ 273 (277)
T PRK13317 271 LAT 273 (277)
T ss_pred Hhh
Confidence 764
No 76
>TIGR00241 CoA_E_activ CoA-substrate-specific enzyme activase, putative. This domain may be involved in generating or regenerating the active sites of enzymes related to (R)-2-hydroxyglutaryl-CoA dehydratase and benzoyl-CoA reductase.
Probab=38.20 E-value=25 Score=35.49 Aligned_cols=42 Identities=31% Similarity=0.437 Sum_probs=31.2
Q ss_pred CeEEecCCCCCCChHHHHHHHHHhhCCCCCCcceEEEcCCCCCCccceEeceee
Q 007563 499 SIQLIGGVALTGGLIPAVEERVLHAIPSNEAIDMVEVLQSRTNPTYVSWKGGAV 552 (598)
Q Consensus 499 nIvLvGG~S~ipG~~~rL~~eL~~~~p~~~~i~~V~v~~~~~dp~~~aWkGgSI 552 (598)
.|+++||++..+++.+.|.+.|.. +|.+. .++++.+=.||++
T Consensus 206 ~Vvl~GGva~n~~l~~~l~~~lg~---------~v~~~---~~~~~~~AlGaAl 247 (248)
T TIGR00241 206 PIVFTGGVSKNKGLVKALEKKLGM---------KVITP---PEPQIVGAVGAAL 247 (248)
T ss_pred CEEEECccccCHHHHHHHHHHhCC---------cEEcC---CCccHHHHHHHHh
Confidence 699999999999999999998841 23332 3566666677664
No 77
>COG1924 Activator of 2-hydroxyglutaryl-CoA dehydratase (HSP70-class ATPase domain) [Lipid metabolism]
Probab=36.38 E-value=13 Score=39.98 Aligned_cols=44 Identities=30% Similarity=0.360 Sum_probs=36.6
Q ss_pred eEEecCCCCCCChHHHHHHHHHhhCCCCCCcceEEEcCCCCCCccceEeceeeecc
Q 007563 500 IQLIGGVALTGGLIPAVEERVLHAIPSNEAIDMVEVLQSRTNPTYVSWKGGAVLGI 555 (598)
Q Consensus 500 IvLvGG~S~ipG~~~rL~~eL~~~~p~~~~i~~V~v~~~~~dp~~~aWkGgSIla~ 555 (598)
|+++||+++..|+...|++.|.. +|.+ |..+++..=.||+++|+
T Consensus 346 iv~~GGva~n~av~~ale~~lg~---------~V~v---P~~~ql~GAiGAAL~a~ 389 (396)
T COG1924 346 IVLQGGVALNKAVVRALEDLLGR---------KVIV---PPYAQLMGAIGAALIAK 389 (396)
T ss_pred EEEECcchhhHHHHHHHHHHhCC---------eeec---CCccchhhHHHHHHHHh
Confidence 99999999999999999998862 3343 34788999999999886
No 78
>COG4012 Uncharacterized protein conserved in archaea [Function unknown]
Probab=34.52 E-value=62 Score=33.18 Aligned_cols=40 Identities=30% Similarity=0.363 Sum_probs=33.7
Q ss_pred EeeehhhHHHHhhcCCc----eEEEEEeCCCcEEEEEeeCCeee
Q 007563 268 AVVHQEGLAAVFGNGLS----TACVVNMGAQVTSVICVEDGVAL 307 (598)
Q Consensus 268 v~~~qesv~a~fgaG~~----sa~VVDiGa~~TsV~pV~dG~~l 307 (598)
++++..-.+|.+|+-.. -++|||+|-+.|..+-|.++.+.
T Consensus 207 av~mDskfaav~gal~dpaa~palvVd~GngHttaalvdedRI~ 250 (342)
T COG4012 207 AVAMDSKFAAVMGALVDPAADPALVVDYGNGHTTAALVDEDRIV 250 (342)
T ss_pred EEEEcchhHhhhhcccCcccCceEEEEccCCceEEEEecCCeEE
Confidence 67778888888887654 58999999999999999988765
No 79
>COG0145 HyuA N-methylhydantoinase A/acetone carboxylase, beta subunit [Amino acid transport and metabolism / Secondary metabolites biosynthesis, transport, and catabolism]
Probab=33.82 E-value=40 Score=39.36 Aligned_cols=31 Identities=32% Similarity=0.418 Sum_probs=25.0
Q ss_pred HhhcCCce--EEEEEeCCCcEEEEEeeCCeeec
Q 007563 278 VFGNGLST--ACVVNMGAQVTSVICVEDGVALP 308 (598)
Q Consensus 278 ~fgaG~~s--a~VVDiGa~~TsV~pV~dG~~l~ 308 (598)
+|=+|... ++++|||..+|.|+-+.+|.+-.
T Consensus 270 a~ltg~~~g~~i~~DmGGTStDva~i~~G~pe~ 302 (674)
T COG0145 270 AYLTGLKAGNAIVFDMGGTSTDVALIIDGEPEI 302 (674)
T ss_pred HHhcccccCCEEEEEcCCcceeeeeeecCcEEe
Confidence 33346666 99999999999999999887653
No 80
>PF03702 UPF0075: Uncharacterised protein family (UPF0075); InterPro: IPR005338 Anhydro-N-acetylmuramic acid kinase catalyzes the specific phosphorylation of 1,6-anhydro-N-acetylmuramic acid (anhMurNAc) with the simultaneous cleavage of the 1,6-anhydro ring, generating MurNAc-6-P. It is also required for the utilisation of anhMurNAc, either imported from the medium, or derived from its own cell wall murein, and in so doing plays a role in cell wall recycling [, ]. ; GO: 0005524 ATP binding, 0016773 phosphotransferase activity, alcohol group as acceptor, 0006040 amino sugar metabolic process, 0009254 peptidoglycan turnover; PDB: 3QBX_B 3QBW_A 3CQY_B.
Probab=32.61 E-value=25 Score=37.84 Aligned_cols=25 Identities=24% Similarity=0.212 Sum_probs=19.2
Q ss_pred hcCeEEecCCCCCCChHHHHHHHHH
Q 007563 497 FCSIQLIGGVALTGGLIPAVEERVL 521 (598)
Q Consensus 497 ~~nIvLvGG~S~ipG~~~rL~~eL~ 521 (598)
...|+|+|||+.=+-|.++|+++|.
T Consensus 285 ~~~v~v~GGGa~N~~L~~~L~~~l~ 309 (364)
T PF03702_consen 285 PDEVYVCGGGARNPFLMERLQERLP 309 (364)
T ss_dssp -EEEEEESGGGG-HHHHHHHHHH-T
T ss_pred CceEEEECCCcCCHHHHHHHHhhCC
Confidence 4579999999998888888888775
No 81
>PRK03011 butyrate kinase; Provisional
Probab=27.63 E-value=35 Score=36.75 Aligned_cols=24 Identities=33% Similarity=0.750 Sum_probs=20.9
Q ss_pred CCEEEEcCCCCeeeeecCCCCCCC
Q 007563 18 SNLVVINPGSANIRIGLAQHDTPL 41 (598)
Q Consensus 18 ~~~iVihpGS~~lriG~asd~~P~ 41 (598)
.+|+||+|||..-||+.--|..|.
T Consensus 2 ~~il~inpgststk~a~~~~~~~~ 25 (358)
T PRK03011 2 MRILVINPGSTSTKIAVFEDEKPI 25 (358)
T ss_pred CEEEEEcCCCchheEEEEcCCcee
Confidence 479999999999999999877654
No 82
>KOG2960 consensus Protein involved in thiamine biosynthesis and DNA damage tolerance [General function prediction only]
Probab=24.77 E-value=37 Score=33.77 Aligned_cols=82 Identities=17% Similarity=0.340 Sum_probs=48.7
Q ss_pred hhHHHhhcCeEEecCCCCCCChHHHHHHHHHhhCCCCCCcceEEEcCCCCCCccceEeceeeeccccCcc--ceeeeH--
Q 007563 491 DLQRKLFCSIQLIGGVALTGGLIPAVEERVLHAIPSNEAIDMVEVLQSRTNPTYVSWKGGAVLGILDFGR--DAWIHR-- 566 (598)
Q Consensus 491 d~r~~L~~nIvLvGG~S~ipG~~~rL~~eL~~~~p~~~~i~~V~v~~~~~dp~~~aWkGgSIla~L~s~~--~~wItk-- 566 (598)
|+-+---+.|+++|.+|. ||...- .+....|+ + +|.|+.....|.--+|.||.+++.+-.-+ .+++..
T Consensus 70 DldkyAesDvviVGAGSa--GLsAAY--~I~~~rPd---l-kvaIIE~SVaPGGGaWLGGQLFSAMvvRKPAhLFL~Eig 141 (328)
T KOG2960|consen 70 DLDKYAESDVVIVGAGSA--GLSAAY--VIAKNRPD---L-KVAIIESSVAPGGGAWLGGQLFSAMVVRKPAHLFLQEIG 141 (328)
T ss_pred HHHhhhccceEEECCCcc--ccceee--eeeccCCC---c-eEEEEEeeecCCCcccccchhhhhhhhcChHHHHHHHhC
Confidence 444444567999998863 443221 12222333 2 67777655677888999999999874211 222211
Q ss_pred HHHHhcCcceeeec
Q 007563 567 EDWIRNGIHIGSGR 580 (598)
Q Consensus 567 ~eyee~G~~i~~~K 580 (598)
--|++.|.-++.++
T Consensus 142 vpYedegdYVVVKH 155 (328)
T KOG2960|consen 142 VPYEDEGDYVVVKH 155 (328)
T ss_pred CCcccCCCEEEEee
Confidence 13788888777654
No 83
>PRK13333 pantothenate kinase; Reviewed
Probab=24.53 E-value=84 Score=31.12 Aligned_cols=27 Identities=26% Similarity=0.457 Sum_probs=17.6
Q ss_pred HHHHhhcCCceEEEEEeCCCcEEEEEeeCC
Q 007563 275 LAAVFGNGLSTACVVNMGAQVTSVICVEDG 304 (598)
Q Consensus 275 v~a~fgaG~~sa~VVDiGa~~TsV~pV~dG 304 (598)
.++++|+ ..+||||.|.. |++..|.+|
T Consensus 77 ~~a~~aa--~~~lVIDaGTA-iTiDvv~~g 103 (206)
T PRK13333 77 IAACYAI--EDGVVVDAGSA-ITVDIMSNG 103 (206)
T ss_pred HHHhccC--CCeEEEEcCCc-eEEEEEcCC
Confidence 4455555 47999999966 445555554
No 84
>PF01869 BcrAD_BadFG: BadF/BadG/BcrA/BcrD ATPase family; InterPro: IPR002731 This domain is found in the BadF (O07462 from SWISSPROT) and BadG (O07463 from SWISSPROT) proteins that are two subunits of Benzoyl-CoA reductase, that may be involved in ATP hydrolysis. The family also includes an activase subunit from the enzyme 2-hydroxyglutaryl-CoA dehydratase (P11568 from SWISSPROT). The hypothetical protein AQ_278 from Aquifex aeolicus O66634 from SWISSPROT contains two copies of this region suggesting that the family may structurally dimerise.; PDB: 2E2N_B 2E2Q_A 2E2P_B 2E2O_A 1ZBS_A 2CH6_A 2CH5_D 1ZC6_A 1HUX_A.
Probab=21.85 E-value=2e+02 Score=29.12 Aligned_cols=84 Identities=15% Similarity=0.242 Sum_probs=52.7
Q ss_pred HHHHHHHHHHHhhhhcCCCCCCCCccceEEecCC----CCCcHHHHHHHHHHHHhcCCCeEeeehhhHHHHhhcCCceEE
Q 007563 212 LEDLYAIWDWILTEKLHIPRSERNLYSAILVLPE----SFDNREIKEMLSIVLRDLRFASAVVHQEGLAAVFGNGLSTAC 287 (598)
Q Consensus 212 ~~dle~i~~~~l~~~L~i~~~~~~~y~~VLvip~----~~~~~~vr~l~ellfe~~~f~~v~~~qesv~a~fgaG~~sa~ 287 (598)
.+.+...++.++ +.++.++.+.. .+.+.-. ...... +..-++.. .+.+..++..++++.-. ..-
T Consensus 41 ~~~i~~~i~~~~-~~~~~~~~~i~---~~~~g~aG~~~~~~~~~---~~~~~~~~----~v~~~~Da~~al~~~~~-~~g 108 (271)
T PF01869_consen 41 MENIKEAIEEAL-SQAGLSPDDIA---AICIGAAGYGRAGDEQE---FQEEIVRS----EVIVVNDAAIALYGATA-EDG 108 (271)
T ss_dssp HHHHHHHHHHHH-HHHTTSTTCCC---EEEEEEEEEEETTTTTH---HHHHHHHH----EEEEEEHHHHHHHHHST-SSE
T ss_pred hhHHHHHHHHHH-HHcCCCccccc---eeeeeEeeecCcccccc---hhhcceEE----EEEEEHHHHHHhCCCCC-CcE
Confidence 445667777777 56777766653 2322211 122222 22112212 99999999999998877 677
Q ss_pred EEEeCCCcEEEEEee-CCeee
Q 007563 288 VVNMGAQVTSVICVE-DGVAL 307 (598)
Q Consensus 288 VVDiGa~~TsV~pV~-dG~~l 307 (598)
||+||.+.+.+.-+. +|...
T Consensus 109 iv~I~GTGS~~~~~~~~g~~~ 129 (271)
T PF01869_consen 109 IVVIAGTGSIAYGRDRDGRVI 129 (271)
T ss_dssp EEEEESSSEEEEEEETTSEEE
T ss_pred EEEEcCCCceEEEEEcCCcEE
Confidence 888888888887777 77655
No 85
>TIGR02707 butyr_kinase butyrate kinase. This model represents an enzyme family in which members are designated either butryate kinase or branched-chain carboxylic acid kinase. The EC designation 2.7.2.7 describes an enzyme with relatively broad specificity; gene products whose context suggests a role in metabolism of aliphatic amino acids are likely to act as branched-chain carboxylic acid kinase. The gene typically found adjacent, ptb (phosphate butyryltransferase), likewise encodes an enzyme that may have a broad specificity that includes a role in aliphatic amino acid cabolism.
Probab=20.99 E-value=54 Score=35.15 Aligned_cols=51 Identities=16% Similarity=0.128 Sum_probs=36.3
Q ss_pred HHhcCCCeEeeehhhHHHHhhcCC--c--eEEEEEeCCCcEEEEEeeCCeeeccCc
Q 007563 260 LRDLRFASAVVHQEGLAAVFGNGL--S--TACVVNMGAQVTSVICVEDGVALPNTE 311 (598)
Q Consensus 260 fe~~~f~~v~~~qesv~a~fgaG~--~--sa~VVDiGa~~TsV~pV~dG~~l~~s~ 311 (598)
.+++||..+..-.-+--++...|+ . +-+++-+|.... ++.|.||.++..+-
T Consensus 146 ~RrygfHgls~~~v~~~~~~~~g~~~~~~~~I~~hLGtGig-~~ai~~Gk~vdgs~ 200 (351)
T TIGR02707 146 ERKSIFHALNQKAVARRIAKELGKRYEEMNLIVAHMGGGIS-VAAHRKGRVIDVNN 200 (351)
T ss_pred hhhhchhhhhHHHHHHHHHHHcCCCcccCCEEEEEeCCCce-eeeEECCEEEEcCC
Confidence 478888877655444444444554 3 789999998655 99999999986553
No 86
>smart00732 YqgFc Likely ribonuclease with RNase H fold. YqgF proteins are likely to function as an alternative to RuvC in most bacteria, and could be the principal holliday junction resolvases in low-GC Gram-positive bacteria. In Spt6p orthologues, the catalytic residues are substituted indicating that they lack enzymatic functions.
Probab=20.91 E-value=2.5e+02 Score=23.31 Aligned_cols=46 Identities=17% Similarity=0.014 Sum_probs=30.8
Q ss_pred EEEEEeCCCcEEEEEe-eCCeeeccCcEEeccccccChHHHHHHHHHHHHh
Q 007563 286 ACVVNMGAQVTSVICV-EDGVALPNTEKTLPFGGEVQILDISRCLLWTQRH 335 (598)
Q Consensus 286 a~VVDiGa~~TsV~pV-~dG~~l~~s~~~l~~GG~~~~~dit~~l~~lL~~ 335 (598)
-+.||+|..++.++-+ .+|.++........-++. .+-+.+.+++..
T Consensus 3 ilgiD~Ggt~i~~a~~d~~g~~~~~~~~~~~~~~~----~~~~~l~~~i~~ 49 (99)
T smart00732 3 VLGLDPGRKGIGVAVVDETGKLADPLEVIPRTNKE----ADAARLKKLIKK 49 (99)
T ss_pred EEEEccCCCeEEEEEECCCCCEecCEEEEEecCcc----hHHHHHHHHHHH
Confidence 4789999999999888 477777543333222455 666666666654
No 87
>PF00871 Acetate_kinase: Acetokinase family; InterPro: IPR000890 Acetate kinase, which is predominantly found in micro-organisms, facilitates the production of acetyl-CoA by phosphorylating acetate in the presence of ATP and a divalent cation [, ]. The enzyme is important in the process of glycolysis, enzyme levels being increased in the presence of excess glucose. The growth of a bacterial mutant lacking acetate kinase has been shown to be inhibited by glucose, suggesting that the enzyme is involved in excretion of excess carbohydrate []. A related enzyme, butyrate kinase, facilitates the formation of butyryl-CoA by phosphorylating butyrate in the presence of ATP to form butyryl phosphate [].; GO: 0016301 kinase activity, 0016774 phosphotransferase activity, carboxyl group as acceptor, 0008152 metabolic process, 0016310 phosphorylation, 0005622 intracellular; PDB: 3P4I_B 3R9P_B 2IIR_J 1SAZ_A 1X9J_D 4DQ8_B 1TUU_A 1TUY_B 1G99_A 1X3N_A ....
Probab=20.83 E-value=59 Score=35.41 Aligned_cols=32 Identities=28% Similarity=0.505 Sum_probs=24.9
Q ss_pred CEEEEcCCCCeeeeecCCCCCCCccceeeEEe
Q 007563 19 NLVVINPGSANIRIGLAQHDTPLNIPHCIARR 50 (598)
Q Consensus 19 ~~iVihpGS~~lriG~asd~~P~~ip~~iA~~ 50 (598)
||+||+|||..+|+.+=.+..+..+-+-.+.+
T Consensus 1 KILVIN~GSSS~Kfalf~~~~~~~l~~g~~e~ 32 (388)
T PF00871_consen 1 KILVINPGSSSTKFALFDMDSGEVLASGLVER 32 (388)
T ss_dssp EEEEEEEESSEEEEEEEETTTTEEEEEEEEES
T ss_pred CEEEEcCChHhheeeeEECCCCCeeeechhee
Confidence 79999999999999998888665544444444
No 88
>PRK09585 anmK anhydro-N-acetylmuramic acid kinase; Reviewed
Probab=20.62 E-value=74 Score=34.36 Aligned_cols=23 Identities=17% Similarity=0.199 Sum_probs=20.4
Q ss_pred cCeEEecCCCCCCChHHHHHHHH
Q 007563 498 CSIQLIGGVALTGGLIPAVEERV 520 (598)
Q Consensus 498 ~nIvLvGG~S~ipG~~~rL~~eL 520 (598)
..|+|+|||+.=+-|.++|+++|
T Consensus 288 ~~vlv~GGGa~N~~Lm~~L~~~l 310 (365)
T PRK09585 288 DELLVCGGGARNPTLMERLAALL 310 (365)
T ss_pred CEEEEECCCcchHHHHHHHHHhc
Confidence 35999999999999999998877
No 89
>PRK02308 uvsE putative UV damage endonuclease; Provisional
Probab=20.34 E-value=67 Score=33.72 Aligned_cols=16 Identities=25% Similarity=0.260 Sum_probs=12.2
Q ss_pred hhcCCC---EEEEcCCCCe
Q 007563 14 AERGSN---LVVINPGSAN 29 (598)
Q Consensus 14 ~~~~~~---~iVihpGS~~ 29 (598)
..-|-+ .||||||+.+
T Consensus 140 ~~lG~~~~~~vViHpG~~~ 158 (303)
T PRK02308 140 DLMGIDDSSKINIHVGGAY 158 (303)
T ss_pred HHCCCCCCCEEEECCCccC
Confidence 334667 9999999963
Done!