Query 007563
Match_columns 598
No_of_seqs 276 out of 1519
Neff 7.2
Searched_HMMs 29240
Date Mon Mar 25 04:53:32 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007563.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/007563hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4fo0_A Actin-related protein 8 100.0 5.1E-94 1.8E-98 811.7 27.1 528 7-582 3-590 (593)
2 4am6_A Actin-like protein ARP8 100.0 6.1E-91 2.1E-95 768.0 23.5 518 14-582 36-652 (655)
3 3qb0_A Actin-related protein 4 100.0 1.3E-65 4.4E-70 562.4 24.5 376 173-581 63-497 (498)
4 3dwl_A Actin-related protein 3 100.0 9.6E-65 3.3E-69 549.5 17.6 326 172-582 72-422 (427)
5 2fxu_A Alpha-actin-1, actin, a 100.0 4.4E-59 1.5E-63 498.3 25.3 322 172-582 50-375 (375)
6 1k8k_B ARP2, actin-like protei 100.0 2.6E-60 8.9E-65 511.2 11.7 320 172-579 53-388 (394)
7 1k8k_A ARP3, actin-like protei 100.0 1E-55 3.5E-60 478.6 24.2 326 172-582 58-413 (418)
8 1jce_A ROD shape-determining p 99.9 1.2E-25 3.9E-30 236.6 20.5 279 174-561 42-331 (344)
9 3h1q_A Ethanolamine utilizatio 99.6 8.6E-16 2.9E-20 155.6 11.1 215 191-554 58-272 (272)
10 2v7y_A Chaperone protein DNAK; 99.5 7.1E-15 2.4E-19 162.6 9.5 226 239-556 112-350 (509)
11 3qfu_A 78 kDa glucose-regulate 99.4 7.1E-14 2.4E-18 148.9 7.3 91 239-334 156-255 (394)
12 1dkg_D Molecular chaperone DNA 99.4 7E-14 2.4E-18 148.6 5.8 224 239-556 138-381 (383)
13 3i33_A Heat shock-related 70 k 99.4 2.4E-13 8.3E-18 145.5 7.1 90 239-333 161-262 (404)
14 1yuw_A Heat shock cognate 71 k 99.0 1.4E-10 4.8E-15 129.5 6.1 91 239-334 142-242 (554)
15 2kho_A Heat shock protein 70; 99.0 5.7E-10 1.9E-14 125.8 7.2 139 215-366 120-276 (605)
16 2ych_A Competence protein PILM 98.9 9E-09 3.1E-13 108.8 13.6 92 254-367 154-252 (377)
17 3d2f_A Heat shock protein homo 98.9 2.9E-09 1E-13 121.3 9.2 91 239-334 141-246 (675)
18 4gni_A Putative heat shock pro 98.9 1.8E-09 6.1E-14 115.7 6.4 110 215-335 135-255 (409)
19 4a2a_A Cell division protein F 98.6 1.4E-07 4.9E-12 101.5 11.8 90 254-365 171-265 (419)
20 4b9q_A Chaperone protein DNAK; 98.6 1.2E-07 4.1E-12 106.8 9.9 109 215-334 120-241 (605)
21 2fsj_A Hypothetical protein TA 98.3 6.3E-07 2.2E-11 94.0 8.0 137 172-336 78-240 (346)
22 1nbw_A Glycerol dehydratase re 97.5 0.00059 2E-08 74.3 11.8 72 272-365 392-468 (607)
23 2d0o_A DIOL dehydratase-reacti 97.4 0.00051 1.7E-08 74.6 10.7 95 249-365 367-466 (610)
24 3js6_A Uncharacterized PARM pr 96.9 0.00082 2.8E-08 70.5 6.2 68 265-336 154-232 (355)
25 2zgy_A Plasmid segregation pro 96.5 0.0015 5.1E-08 67.2 4.0 70 262-335 137-212 (320)
26 4apw_A ALP12; actin-like prote 96.4 0.0024 8.3E-08 66.1 4.9 67 265-335 149-219 (329)
27 1t6c_A Exopolyphosphatase; alp 84.5 2.7 9.4E-05 42.7 8.7 42 283-330 137-178 (315)
28 3cet_A Conserved archaeal prot 79.4 1.5 5.2E-05 44.9 4.5 25 284-308 127-151 (334)
29 4ehu_A Activator of 2-hydroxyi 79.3 0.4 1.4E-05 47.6 0.1 66 475-555 188-253 (276)
30 3mdq_A Exopolyphosphatase; str 77.0 2.2 7.4E-05 43.5 4.9 40 284-329 131-170 (315)
31 3cer_A Possible exopolyphospha 74.5 2.6 8.8E-05 43.5 4.7 42 284-329 146-191 (343)
32 1u6z_A Exopolyphosphatase; alp 67.4 6.2 0.00021 43.0 5.9 40 285-330 138-177 (513)
33 3hi0_A Putative exopolyphospha 66.1 7.7 0.00026 42.1 6.4 39 284-328 140-178 (508)
34 3aap_A Ectonucleoside triphosp 47.2 18 0.0006 37.3 4.9 36 284-319 140-177 (353)
35 2ews_A Pantothenate kinase; PA 44.7 6.1 0.00021 39.7 0.9 73 474-555 214-287 (287)
36 2h3g_X Biosynthetic protein; p 37.3 2.4E+02 0.0081 27.5 11.3 89 211-307 35-146 (268)
37 2zgy_A Plasmid segregation pro 35.7 6.3 0.00022 39.7 -0.7 47 497-554 273-319 (320)
38 2i7n_A Pantothenate kinase 1; 33.3 16 0.00056 37.8 2.0 75 474-554 283-358 (360)
39 1hux_A Activator of (R)-2-hydr 32.0 8.4 0.00029 38.0 -0.5 56 497-564 209-264 (270)
40 3js6_A Uncharacterized PARM pr 31.9 5.6 0.00019 41.1 -1.9 62 476-556 273-336 (355)
41 2fsj_A Hypothetical protein TA 30.8 8.1 0.00028 39.6 -0.8 32 20-52 23-54 (346)
42 4apw_A ALP12; actin-like prote 29.5 18 0.0006 36.7 1.4 46 496-555 278-323 (329)
43 2gup_A ROK family protein; sug 27.2 1.1E+02 0.0038 29.7 6.9 52 255-309 87-143 (292)
44 2e1z_A Propionate kinase; TDCD 24.8 29 0.001 36.5 2.1 27 284-311 210-236 (415)
45 1g99_A Acetate kinase; alpha/b 23.0 31 0.001 36.3 1.8 26 285-311 203-228 (408)
46 2nrh_A Transcriptional activat 21.3 46 0.0016 31.8 2.6 30 272-304 75-104 (219)
47 3cj1_A Ectonucleoside triphosp 20.5 84 0.0029 33.5 4.7 36 284-319 190-226 (456)
48 2qm1_A Glucokinase; alpha-beta 20.2 2.2E+02 0.0074 27.9 7.6 47 261-309 106-159 (326)
49 2iir_A Acetate kinase; transfe 20.0 32 0.0011 36.1 1.2 26 285-311 202-227 (403)
No 1
>4fo0_A Actin-related protein 8; chromatin remodeling, nucleosomes, NU gene regulation; HET: ATP; 2.60A {Homo sapiens}
Probab=100.00 E-value=5.1e-94 Score=811.72 Aligned_cols=528 Identities=30% Similarity=0.518 Sum_probs=379.9
Q ss_pred cCchhhhhhcCCC-EEEEcCCCCeeeeecCCCCCCCccceeeEEecCCCCccccccccccccc--cchhhhhHHHHHHHH
Q 007563 7 VVPSQLIAERGSN-LVVINPGSANIRIGLAQHDTPLNIPHCIARRTSQVPKRNVVDQMLNSQV--TTSQHVERERAYDVI 83 (598)
Q Consensus 7 ~~~~~~~~~~~~~-~iVihpGS~~lriG~asd~~P~~ip~~iA~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~ 83 (598)
++|++..++++++ ||||||||+|||||||+|.+|++||||||||+++.......+..+.... ..+..+++......+
T Consensus 3 ~~~~~~~~~~~~~~iIVIdpGS~~~riG~A~d~~P~~iP~~iar~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (593)
T 4fo0_A 3 LVPESLQEQIQSNFIIVIHPGSTTLRIGRATDTLPASIPHVIARRHKQQGQPLYKDSWLLREGLNKPESNEQRQNGLKMV 82 (593)
T ss_dssp CCCGGGTTTSGGGGEEEEECCSSEEEEEETTCSSCEEEECCEEEECSSTTCCCCBCCSSCCTTTTSTTHHHHHHHHHHHH
T ss_pred CCCCccccccCCCCEEEEeCCCCCeEeeecCCCCCCeeeEEEEEECCCCCCCcccccccccccccccchhhhhhhhHHHH
Confidence 6899988777655 9999999999999999999999999999999876433333333222111 112222232222222
Q ss_pred HhhcCCCcchHhhhcCCCCcccccccccccccccccccccccccccCCCCCCCcccccccccccCcccccCCCCCccccc
Q 007563 84 ASLMKIPFLDEEVANNSFPRKMGRVDAFNQQNSRKDVAFSWTNVYEKEPMPSTALESSSSMNHGIIKESMGQHRNTDIKE 163 (598)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~n~~~~pe~~~~~~~~~~~~ 163 (598)
.+.++.. +..+++|+. +|++|++++||++.+||.+++|+++.+.+
T Consensus 83 ~~~~~~~----------------------------------~~~~~~r~~-~~s~~~~~~~n~~~~p~~i~~~~~~~~~~ 127 (593)
T 4fo0_A 83 DQAIWSK----------------------------------KMSNGTRRI-PVSPEQARSYNKQMRPAILDHCSGNKWTN 127 (593)
T ss_dssp HHHHHHS----------------------------------CCTTSCCCC-CCCHHHHHHHHTTCCCEEEESSCSCCCCC
T ss_pred HHHHHHH----------------------------------hhhcccccC-CCcHHHhhhhhccCCCcccCCCCcccccc
Confidence 2222110 112334444 49999999999999999998886654322
Q ss_pred cccccccCCceEEccccccCCCCCCceEecceecCeeeec--CCCCccccHHHHHHHHHHHhhhhcCCCCCCCCccceEE
Q 007563 164 LNSSERKFREFICGEEALRVSPTEPYCIHRPIRRGHLNIS--QHYPMQQVLEDLYAIWDWILTEKLHIPRSERNLYSAIL 241 (598)
Q Consensus 164 ~~~~~~~~~~~~vGeeAl~~~~~~~~~l~~Pi~~G~~n~~--~~~s~~~~~~dle~i~~~~l~~~L~i~~~~~~~y~~VL 241 (598)
....+++|||+||+++++.+.|.|+|||+||.||++ +|.|++.+|+|+|+||+|+|+++|+|++++.+.|++||
T Consensus 128 ----~~~~~~~~vG~~al~~~~~~~~~l~~Pi~~G~~n~~~~~~~s~~~~wdd~e~iw~~~~~~~L~i~~~d~~~~pvll 203 (593)
T 4fo0_A 128 ----TSHHPEYLVGEEALYVNPLDCYNIHWPIRRGQLNIHPGPGGSLTAVLADIEVIWSHAIQKYLEIPLKDLKYYRCIL 203 (593)
T ss_dssp ----CTTCCSEEETHHHHTSCTTSSEEEECSEETTEECCCSSTTCSHHHHHHHHHHHHHHHHHHTSCCCGGGGGGCEEEE
T ss_pred ----ccccccccccHHHhhcCCcccceEecCcccCccccccCCccchhcCHHHHHHHHHHHHHHhcCCCchhccCCcEEE
Confidence 224478999999999988889999999999999997 56699999999999999999999999999877776666
Q ss_pred ecCCCCCcHHHHHHHHHHHHhcCCCeEeeehhhHHHHhhcCCceEEEEEeCCCcEEEEEeeCCeeeccCcEEeccccccC
Q 007563 242 VLPESFDNREIKEMLSIVLRDLRFASAVVHQEGLAAVFGNGLSTACVVNMGAQVTSVICVEDGVALPNTEKTLPFGGEVQ 321 (598)
Q Consensus 242 vip~~~~~~~vr~l~ellfe~~~f~~v~~~qesv~a~fgaG~~sa~VVDiGa~~TsV~pV~dG~~l~~s~~~l~~GG~~~ 321 (598)
+.|+.+++.+.++|+++|||.|+||+++++++++||+||+|++||||||||+++|+|+||+||+++.++++++++||+
T Consensus 204 tep~~~~~~~re~~~eilFE~f~~pa~~~~~~~vla~ya~G~~tglVVDiG~~~T~v~PV~dG~~l~~~~~rl~~GG~-- 281 (593)
T 4fo0_A 204 LIPDIYNKQHVKELVNMILMKMGFSGIVVHQESVCATYGSGLSSTCIVDVGDQKTSVCCVEDGVSHRNTRLCLAYGGS-- 281 (593)
T ss_dssp EECSSCCHHHHHHHHHHHHHTTCCSEEEEEEHHHHHHHHHTCSEEEEEEECSSCEEEEEEESSCBCGGGCEEESCCHH--
T ss_pred EeCCCCCHHHHHHHHHHHHHhcCCCeEEeechHHHHHHHCCCCceEEEEeCCCceeeeeeECCEEehhheEEecccHH--
Confidence 666667777777799999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHhcCCCCCcccccccchhhHHHHHHHHHHceeccCCccccccccccccCCCCCC-Ccceeee---ecc
Q 007563 322 ILDISRCLLWTQRHHQTWPQIRTDILTKAMDLLMLNRIKESYCEIKEGEIDAVAVVHSYEDGMPPG-SHKTRLI---ALN 397 (598)
Q Consensus 322 ~~dit~~l~~lL~~~~~~p~~~~~~l~~~~d~~l~e~lKe~~c~v~~~~~~~~~~~~~~~~~~p~~-~~k~~~~---~~~ 397 (598)
+||++|.+||+.++ +| +.+.++.++.|+.++++|||++||++.+....... .+....|.+ +.++.++ +..
T Consensus 282 --~lt~~L~~lL~~~~-~~-~~~~~~~~~~d~~~v~~iKe~~c~v~~d~~~~~~~--~~~~~~p~~~~~~~~~~~~~E~~ 355 (593)
T 4fo0_A 282 --DVSRCFYWLMQRAG-FP-YRECQLTNKMDCLLLQHLKETFCHLDQDISGLQDH--EFQIRHPDSPALLYQFRLGDEKL 355 (593)
T ss_dssp --HHHHHHHHHHHHTT-CS-CTTCCTTCHHHHHHHHHHHHHHCBCCTTCCSCEEE--EEEECCTTSCEEEEEEEECTHHH
T ss_pred --HHHHHHHHHHHhcC-CC-ccccccccchhHHHHHHHHHHhcccccchHHhhhh--hhhcccCCCCceeeEEeccchhh
Confidence 99999999998775 44 45567778899999999999999999764332111 111123332 3444443 456
Q ss_pred CCCCCCCCCcccCCCCCCCC---CCCCCCCc---------------------------ccccCCCccccCC-CCCCCCCC
Q 007563 398 VPPMGLFYPKLLVPDVYPPP---PRSWFNDY---------------------------EDMLEDTWHTDFP-RRSDISDN 446 (598)
Q Consensus 398 ~aP~~lF~P~~~~~~~~~~p---~~~~~~d~---------------------------~d~~~d~~~~~~~-er~~~~E~ 446 (598)
.+|+++|+|.++........ .+. ..++ .-..+++....++ +|+.++|.
T Consensus 356 ~~p~~lf~p~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~~~~~~e~~~~pe~ 434 (593)
T 4fo0_A 356 QAPMALFYPATFGIVGQKMTTLQHRS-QGDPEDPHDEHYLLATQSKQEQSAKATADRKSASKPIGFEGDLRGQSSDLPER 434 (593)
T ss_dssp HHHHTTTSGGGGCCCSSCCEEECC--------------------------------------------------------
T ss_pred cCchhhcChhhhcccccccchhhhhc-ccCcccchhhhhhhhcccchhhhhhcccccccccCCCCcccccccccccCchh
Confidence 89999999988753321000 000 0000 0123344444444 78999999
Q ss_pred CC-CCCCCCCCCC-------CCCCcc--------CCCCCcccCCCHHHHHHHHHhcCCChhhHHHhhcCeEEecCCCCCC
Q 007563 447 FY-PGINVGLPMW-------ESYPVL--------TTKPKKEEKIGLAEAVTSSILSTGRIDLQRKLFCSIQLIGGVALTG 510 (598)
Q Consensus 447 lf-p~~~~~~~~~-------~~~~~~--------~~~~~~~~~~~L~~aI~~sI~~~~~~d~r~~L~~nIvLvGG~S~ip 510 (598)
+| |....+.... ...+.. .......+..||++||.+||.+|+..|+|++||+||+||||+|++|
T Consensus 435 lf~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gL~~aI~~SI~~~~~~D~r~~L~~NIvltGG~s~~p 514 (593)
T 4fo0_A 435 LHSQEVDLGSAQGDGLMAGNDSEEALTALMSRKTAISLFEGKALGLDKAILHSIDCCSSDDTKKKMYSSILVVGGGLMFH 514 (593)
T ss_dssp ------------------------------------CHHHHSCCCHHHHHHHHHHTCSSHHHHHHHHHEEEEESSTTCCB
T ss_pred ccCcccccccccccccccccccccccccccccccccccccccCCCHHHHHHHHHHhCCcHHHHHHHhCCEEEEchhhchh
Confidence 99 4332111000 000000 0001113467999999999999944799999999999999999999
Q ss_pred ChHHHHHHHHHhhCCCCCC--cceEEEcCC--CCCCccceEeceeeeccccCccceeeeHHHHHhcCcceeeeccc
Q 007563 511 GLIPAVEERVLHAIPSNEA--IDMVEVLQS--RTNPTYVSWKGGAVLGILDFGRDAWIHREDWIRNGIHIGSGRKY 582 (598)
Q Consensus 511 G~~~rL~~eL~~~~p~~~~--i~~V~v~~~--~~dp~~~aWkGgSIla~L~s~~~~wItk~eyee~G~~i~~~K~~ 582 (598)
||.+||++||..++|...+ +.+|+|++. .+||++++|+||||||+|++|+++||||+||+|+|++||++||.
T Consensus 515 Gf~~RL~~eL~~~~p~~~~~~~~~v~v~~~p~~~d~~~~aW~GgSilasL~~f~~~wItk~EYeE~G~~il~~kc~ 590 (593)
T 4fo0_A 515 KAQEFLQHRILNKMPPSFRRIIENVDVITRPKDMDPRLIAWKGGAVLACLDTTQELWIYQREWQRFGVRMLRERAA 590 (593)
T ss_dssp THHHHHHHHHHHHSCHHHHHHSSCCEEESSGGGCCTTTHHHHHHHHHHHCGGGGGTCEEHHHHHHHTTHHHHHHCS
T ss_pred cHHHHHHHHHHHhCcchhccccceEEEECCCCCCCCceeeehhhHHHhcCccHHHeeECHHHHHhhCcHHHhhcCC
Confidence 9999999999999986532 235677764 36999999999999999999999999999999999999999995
No 2
>4am6_A Actin-like protein ARP8; nuclear protein, chromatin remodelling complex, ATP-binding nuclear actin-related protein; 2.70A {Saccharomyces cerevisiae} PDB: 4am7_A*
Probab=100.00 E-value=6.1e-91 Score=768.02 Aligned_cols=518 Identities=21% Similarity=0.366 Sum_probs=385.1
Q ss_pred hhcCCCEEEEcCCCCeeeeecCCCCCCCccceeeEEecCCCCccccccccccccccchhhhhHHHHHHHHHhhcCCCcch
Q 007563 14 AERGSNLVVINPGSANIRIGLAQHDTPLNIPHCIARRTSQVPKRNVVDQMLNSQVTTSQHVERERAYDVIASLMKIPFLD 93 (598)
Q Consensus 14 ~~~~~~~iVihpGS~~lriG~asd~~P~~ip~~iA~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (598)
..++++||||||||+|||||||||++|++||||||||++......... ...+....+..++++..+.+|++.||..
T Consensus 36 ~~~~~~~IVIHpGS~~lRIG~AsD~~P~~ip~~iA~~~~~~~~~~~~~-~~~~~~~~~~~~~f~~~~~~~~~~~k~r--- 111 (655)
T 4am6_A 36 LNDPTATIVIHPGSNSIKIGFPKDDHPVVVPNCVAVPKKWLDLENSEH-VENVCLQREQSEEFNNIKSEMEKNFRER--- 111 (655)
T ss_dssp CCCGGGEEEEECCSSEEEEECTTSSSCEEEESCEEEEGGGSCCSSSCC-CCTTCCCSCCCHHHHHHHHHHHHHHHHH---
T ss_pred ccCCCCeEEEcCCCcceeeeecCCCCCcccceeEEeccccccCCCccc-cCccccchhhhHHHHHHHHHHHHHHHHH---
Confidence 345799999999999999999999999999999999976421110000 0000011234467777777777766532
Q ss_pred HhhhcCCCCcccccccccccccccccccccccccccCCCCCCCcccccccccccCcccccCCCCCccccccccccccCCc
Q 007563 94 EEVANNSFPRKMGRVDAFNQQNSRKDVAFSWTNVYEKEPMPSTALESSSSMNHGIIKESMGQHRNTDIKELNSSERKFRE 173 (598)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~n~~~~pe~~~~~~~~~~~~~~~~~~~~~~ 173 (598)
|+.||||+.| |++|++++||++.+||.|++|||+...+|... .++
T Consensus 112 -------------------------------mr~~k~r~~p-n~~e~~~~fN~~~~Pe~i~~~nDp~~~~W~~~---~~d 156 (655)
T 4am6_A 112 -------------------------------MRYYKRKVPG-NAHEQVVSFNENSKPEIISEKNDPSPIEWIFD---DSK 156 (655)
T ss_dssp -------------------------------HHHHSCCCST-TCCSSTTCCEEEECSCCCCSSSSCCSCCCBCC---TTS
T ss_pred -------------------------------HhhcCCCCCC-CCHHHHHHhcCCCCCeECCCCCCccccccccC---CCC
Confidence 4556777776 99999999999999999999988777666432 268
Q ss_pred eEEccccccCCCCCCceEecceecCeeeec--CCCCccccHHHHHHHHHHHhhh-hcCCCCCCCCccceEEecCCCCCcH
Q 007563 174 FICGEEALRVSPTEPYCIHRPIRRGHLNIS--QHYPMQQVLEDLYAIWDWILTE-KLHIPRSERNLYSAILVLPESFDNR 250 (598)
Q Consensus 174 ~~vGeeAl~~~~~~~~~l~~Pi~~G~~n~~--~~~s~~~~~~dle~i~~~~l~~-~L~i~~~~~~~y~~VLvip~~~~~~ 250 (598)
+|||+||+.+. ...+.++|||++|.++++ +|.|+|.+|+++|.||+|+|.+ +|+++++++.. ++|||++++++++
T Consensus 157 ~~VGdEA~~~~-r~~l~l~~PI~~GvI~~~s~Dy~s~q~~WD~mE~Iw~y~f~~~~L~V~p~~~~e-~pVLLTEPplnp~ 234 (655)
T 4am6_A 157 LYYGSDALRCV-DEKFVIRKPFRGGSFNVKSPYYKSLAELISDVTKLLEHALNSETLNVKPTKFNQ-YKVVLVIPDIFKK 234 (655)
T ss_dssp CEEHHHHHTBC-TTTEEEECSEETTEECTTCSSCSSHHHHHHHHHHHHHHHHBSSSCBCCGGGGGG-CEEEEEECTTCCH
T ss_pred EEEehHHhhCC-ccCeEEeccccCCEecccCCccccccccHHHHHHHHHHHhccccccccccccCC-CcEEEEeCCCCCH
Confidence 99999999874 368999999999999864 6779999999999999999984 89998862111 1789988888887
Q ss_pred HHHH-HHHHHHHhcCCCeEeeehhhHHHHhhcC-CceEEEEEeCCCcEEEEEeeCCeeeccCcEEeccccccChHHHHHH
Q 007563 251 EIKE-MLSIVLRDLRFASAVVHQEGLAAVFGNG-LSTACVVNMGAQVTSVICVEDGVALPNTEKTLPFGGEVQILDISRC 328 (598)
Q Consensus 251 ~vr~-l~ellfe~~~f~~v~~~qesv~a~fgaG-~~sa~VVDiGa~~TsV~pV~dG~~l~~s~~~l~~GG~~~~~dit~~ 328 (598)
..|+ |++++||.|||++++++++++||+||+| .++|||||+|++.|+|+||+||++++++++++++||+ ++|++
T Consensus 235 ~~REkm~EIlFE~fgvpavyl~~qavlAlyasGl~ttGLVVDiG~g~T~VvPV~eG~vl~~ai~rL~iGG~----dLT~y 310 (655)
T 4am6_A 235 SHVETFIRVLLTELQFQAVAIIQESLATCYGAGISTSTCVVNIGAAETRIACVDEGTVLEHSAITLDYGGD----DITRL 310 (655)
T ss_dssp HHHHHHHHHHHHTSCCSEEEEEEHHHHHHHHSCCSSCEEEEEECSSCEEEEEEETTEECGGGCEEESCCHH----HHHHH
T ss_pred HHHHHHHHHHHhhcCCCeeeeccHHHHHHHhCCCCCceEEEcCCCceEEEEEEeCCEEEhhheeeecchHH----HHHHH
Confidence 7775 9999999999999999999999999999 6999999999999999999999999999999999999 99999
Q ss_pred HHHHHHhcCCCCCcccccccchhhHHHHHHHHHHceeccCCccccc-cccccccCCCCCCCcceeee---eccCCCCCCC
Q 007563 329 LLWTQRHHQTWPQIRTDILTKAMDLLMLNRIKESYCEIKEGEIDAV-AVVHSYEDGMPPGSHKTRLI---ALNVPPMGLF 404 (598)
Q Consensus 329 l~~lL~~~~~~p~~~~~~l~~~~d~~l~e~lKe~~c~v~~~~~~~~-~~~~~~~~~~p~~~~k~~~~---~~~~aP~~lF 404 (598)
|.++|+.++ +| |.++++.+..+++++++|||++|||+..++++. ..++...++.+ +.||.++ +.++||+++|
T Consensus 311 L~kLL~~rg-yp-y~~~~f~t~~e~eiVrdIKEk~CyVs~~Di~~q~~~f~~r~P~~~--~~ky~i~vgdErflaPe~lF 386 (655)
T 4am6_A 311 FALFLLQSD-FP-LQDWKIDSKHGWLLAERLKKNFTTFQDADVAVQLYNFMNRSPNQP--TEKYEFKLFDEVMLAPLALF 386 (655)
T ss_dssp HHHHHHHTT-CS-CCSCCTTSHHHHHHHHHHHHHHCCCCGGGCCSEEEEEEECCSSSC--EEEEEEEESSHHHHHHHGGG
T ss_pred HHHHHHHcC-CC-ccccCCCCcchHHHHHHHHHheEEEcccchhhhhhcceeccCCCC--CcceEEEECCeehhCchhcC
Confidence 999998875 33 355678888999999999999999976665421 12222233222 4566654 5678999999
Q ss_pred CCcccCCCCCCCCC----CCCCC----CcccccCCCccccCCCCCCCCCCCCCCCCCCCCC-------------CCCCCc
Q 007563 405 YPKLLVPDVYPPPP----RSWFN----DYEDMLEDTWHTDFPRRSDISDNFYPGINVGLPM-------------WESYPV 463 (598)
Q Consensus 405 ~P~~~~~~~~~~p~----~~~~~----d~~d~~~d~~~~~~~er~~~~E~lfp~~~~~~~~-------------~~~~~~ 463 (598)
+|.++..+...... +.+++ -|++.++|+.+..-. .......++........ .+..+.
T Consensus 387 ~Pei~~~~~~~~~~~~~~~~~~~~s~d~y~~~~nd~~S~~q~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 464 (655)
T 4am6_A 387 FPQIFKLIRTSSHKNSSLEFQLPESRDLFTNELNDWNSLSQF--ESKEGNLYCDLNDDLKILNRILDAHNIIDQLQDKPE 464 (655)
T ss_dssp STHHHHHTSCCCCCCHHHHTTSCCCBCTTTCCBCSCCCHHHH--HHHTTCCGGGCCSHHHHHHHHHHHHHHHHHHHTSSC
T ss_pred ChhhcccccccccccchhhhhcCccccccCCCCCCccchhHH--hhhccccCCCCccHhhhhhhhhcccccccccccCCc
Confidence 99998654432211 11222 244555554443100 00000111110000000 000000
Q ss_pred cCCCCCcccCCCHHHHHHHHHhcCC-ChhhH--HHhhcCeEEecCCCCCCChHHHHHHHHHhhCCCCC------------
Q 007563 464 LTTKPKKEEKIGLAEAVTSSILSTG-RIDLQ--RKLFCSIQLIGGVALTGGLIPAVEERVLHAIPSNE------------ 528 (598)
Q Consensus 464 ~~~~~~~~~~~~L~~aI~~sI~~~~-~~d~r--~~L~~nIvLvGG~S~ipG~~~rL~~eL~~~~p~~~------------ 528 (598)
....+.....+||+.||.+||.+++ ..|.+ ++||+||+||||||+||||+..|++||....|...
T Consensus 465 ~~~~~~~~~~~pLdkAIi~SIt~a~~~~d~~k~~~~y~nilivGggski~g~~~~L~dri~i~rp~~~s~~~~~~~~~~~ 544 (655)
T 4am6_A 465 NYGNTLKENFAPLEKAIVQSIANASITADVTRMNSFYSNILIVGGSSKIPALDFILTDRINIWRPSLLSSASFPQFYKKL 544 (655)
T ss_dssp SCSCSSCCCCCCHHHHHHHHHHHHHHTSCGGGHHHHHTCEEEESTTCCCTTHHHHHHHHHHHHSCSTTTBTTHHHHHHHH
T ss_pred ccccccccccccHHHHHHHHHHhhhccccHHHHHHHhhcEEEEcCcccCccHHHHHHHHHHhhCcccccccccHHHHHHH
Confidence 0111112346899999999999543 23665 59999999999999999999999999987655321
Q ss_pred ----------------------------------------------------CcceEEEcC--CCCCCccceEeceeeec
Q 007563 529 ----------------------------------------------------AIDMVEVLQ--SRTNPTYVSWKGGAVLG 554 (598)
Q Consensus 529 ----------------------------------------------------~i~~V~v~~--~~~dp~~~aWkGgSIla 554 (598)
.+-+|+|++ +++||++++|+||||||
T Consensus 545 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~i~V~~~p~~~d~~~~~W~GgSvla 624 (655)
T 4am6_A 545 TKEIKDLEGHYVNAPDKTEDENKQILQAQIKEKIVEELEEQHQNIEHQNGNEHIFPVSIIPPPRDMNPALIIWKGASVLA 624 (655)
T ss_dssp HHHHHHHHSTTCSCCSSSCCSSTTSTTHHHHHHHHHHHHHHHHHHHHTTSCCCBCCCCEECCCTTSCGGGHHHHHHHHHT
T ss_pred HHhhhhhhhhhccccccccccchhhhhhhhhhhhhhhhhhhhhhhhhccccCCceeeEEeCCccccCcceeEEecceeee
Confidence 111356665 45899999999999999
Q ss_pred cccCccceeeeHHHHHhcCcceeeeccc
Q 007563 555 ILDFGRDAWIHREDWIRNGIHIGSGRKY 582 (598)
Q Consensus 555 ~L~s~~~~wItk~eyee~G~~i~~~K~~ 582 (598)
+|++|+++|||++||+|+|++|+++||+
T Consensus 625 ~l~~f~e~wIt~~Eyde~G~~il~~k~~ 652 (655)
T 4am6_A 625 QIKLVEELFITNSDWDVHGSRILQYKCI 652 (655)
T ss_dssp TSHHHHHHCEEHHHHHHHGGGGGGTSCS
T ss_pred ecccHhheeecHHHHhhhcchheEeccc
Confidence 9999999999999999999999999984
No 3
>3qb0_A Actin-related protein 4; actin fold, ATP binding, nucleus, structural protein; HET: ATP; 3.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.3e-65 Score=562.38 Aligned_cols=376 Identities=20% Similarity=0.306 Sum_probs=272.5
Q ss_pred ceEEccccccCCCCCCceEecceecCeeeecCCCCccccHHHHHHHHHHHhhhhcCCCCCCCCccceEEecCCCCCcHHH
Q 007563 173 EFICGEEALRVSPTEPYCIHRPIRRGHLNISQHYPMQQVLEDLYAIWDWILTEKLHIPRSERNLYSAILVLPESFDNREI 252 (598)
Q Consensus 173 ~~~vGeeAl~~~~~~~~~l~~Pi~~G~~n~~~~~s~~~~~~dle~i~~~~l~~~L~i~~~~~~~y~~VLvip~~~~~~~v 252 (598)
+++||++|.... +..+.++|||++|.+. ||+++|.||+|+|.+.|++.+.++. +|||+++++++...
T Consensus 63 ~~~vG~e~~~~~-r~~l~l~~Pi~~GvI~---------dwd~~E~iw~~~f~~~L~v~p~~~~---pvlltep~~n~~~~ 129 (498)
T 3qb0_A 63 KKIFSEQSIGIP-RKDYELKPIIENGLVI---------DWDTAQEQWQWALQNELYLNSNSGI---PALLTEPVWNSTEN 129 (498)
T ss_dssp CEECCTTGGGSC-CTTEEEEESEETTEES---------CHHHHHHHHHHHHHHTSCCSCCTTC---CEEEEECTTCCHHH
T ss_pred cEEEecHHHhcC-cCceEEeccCcCCEEc---------cHHHHHHHHHHHHHhhhCCCcccCC---ceEEEeCCCCcHHH
Confidence 357898744432 4679999999999999 9999999999999988999888762 59999999998887
Q ss_pred HH-HHHHHHHhcCCCeEeeehhhHHHHhhcCCceEEEEEeCCCcEEEEEeeCCeeeccCcEEeccccccChHHHHHHHHH
Q 007563 253 KE-MLSIVLRDLRFASAVVHQEGLAAVFGNGLSTACVVNMGAQVTSVICVEDGVALPNTEKTLPFGGEVQILDISRCLLW 331 (598)
Q Consensus 253 r~-l~ellfe~~~f~~v~~~qesv~a~fgaG~~sa~VVDiGa~~TsV~pV~dG~~l~~s~~~l~~GG~~~~~dit~~l~~ 331 (598)
|+ |++++||.|||++++++.+++||+||+|+++|||||+|++.|+|+||+||+++++++.++++||+ ++|++|.+
T Consensus 130 Re~~~eilFE~f~vpav~l~~~~vlalya~G~~tglVVDiG~g~T~vvPI~~G~~l~~ai~rl~vgG~----~lt~~L~~ 205 (498)
T 3qb0_A 130 RKKSLEVLLEGMQFEACYLAPTSTCVSFAAGRPNCLVVDIGHDTCSVSPIVDGMTLSKSTRRNFIAGK----FINHLIKK 205 (498)
T ss_dssp HHHHHHHHHTTSCCSEEEEEEHHHHHHHHHTCSSEEEEEECSSCEEEEEEETTEECGGGCEEESCSHH----HHHHHHHH
T ss_pred HHHHHHHHHhhcCCCeEeecchHHHHHHHcCCCeEEEEEcCCCcEEEEEEeCCEEccccceeccccHH----HHHHHHHH
Confidence 75 99999999999999999999999999999999999999999999999999999999999999999 99999999
Q ss_pred HHHhcCCCCCcc-----------cccc------cchh-hHHHHHHHHHHceeccCC-ccccc------cccccccCCCCC
Q 007563 332 TQRHHQTWPQIR-----------TDIL------TKAM-DLLMLNRIKESYCEIKEG-EIDAV------AVVHSYEDGMPP 386 (598)
Q Consensus 332 lL~~~~~~p~~~-----------~~~l------~~~~-d~~l~e~lKe~~c~v~~~-~~~~~------~~~~~~~~~~p~ 386 (598)
+|+.++..|.|. .+++ .+.. +.+++++|||++|+|+.+ +++.. .....|+ +|+
T Consensus 206 lL~~~~i~P~~~i~~k~~~~~~~~~~~~~~~s~~~~~~~~~iv~~iKE~~c~Va~~~~~~~~~~~~~~~~~~~ye--LPD 283 (498)
T 3qb0_A 206 ALEPKEIIPLFAIKQRKPEFIKKTFDYEVDKSLYDYANNRGFFQECKETLCHICPTKTLEETKTELSSTAKRSIE--SPW 283 (498)
T ss_dssp HTTTSCCCCSTTEEECSSSCEECCCSSCCCHHHHHHHHHHTHHHHHHHHTCCCCSSCHHHHHHHHHHTCCCEEEE--CSS
T ss_pred HHHhccccchhhhcccccccccccCCCccCccHHHHHHHHHHHHHHHHhhEEecCCccHhHHhhhccCcCceEEE--CCC
Confidence 998654333321 1111 1122 456999999999999875 23210 1123344 676
Q ss_pred CCcceee-ee-ccCCCCCCCCCcccCCCCCCCCCCCCCCCcccccCCCccccC-CCCCCCCCCCC-CCCCCCCC--CCCC
Q 007563 387 GSHKTRL-IA-LNVPPMGLFYPKLLVPDVYPPPPRSWFNDYEDMLEDTWHTDF-PRRSDISDNFY-PGINVGLP--MWES 460 (598)
Q Consensus 387 ~~~k~~~-~~-~~~aP~~lF~P~~~~~~~~~~p~~~~~~d~~d~~~d~~~~~~-~er~~~~E~lf-p~~~~~~~--~~~~ 460 (598)
+.. ..+ .+ ...+|+.||+|.++..... .|. ..+..++..+-+. +.+.. .+... .+...... ..+.
T Consensus 284 G~~-i~lg~E~Rf~~pE~LF~P~~~g~~~~-~~~------~~~~~~~~~~~~y~~~~~~-~~~~~~~~~~~~~~~~~~~~ 354 (498)
T 3qb0_A 284 NEE-IVFDNETRYGFAEELFLPKEDDIPAN-WPR------SNSGVVKTWRNDYVPLKRT-KPSGVNKSDKKVTPTEEKEQ 354 (498)
T ss_dssp SCE-EEECHHHHHHHHHTTTSCCGGGSCTT-SCC------CSSSCCCCCSCCCCCCCBC-C-------------------
T ss_pred CCE-EEECchHhhhCchhhCCHhHcCCccc-ccc------ccccccccccccccccccc-cccccccccccccccccccc
Confidence 643 233 24 4567888888876532100 000 0001111111000 00000 00000 00000000 0000
Q ss_pred CCc-------------------cC-----CCCCcccCCCHHHHHHHHHhcCCChhhHHHhhcCeEEecCCCCCCChHHHH
Q 007563 461 YPV-------------------LT-----TKPKKEEKIGLAEAVTSSILSTGRIDLQRKLFCSIQLIGGVALTGGLIPAV 516 (598)
Q Consensus 461 ~~~-------------------~~-----~~~~~~~~~~L~~aI~~sI~~~~~~d~r~~L~~nIvLvGG~S~ipG~~~rL 516 (598)
++. .+ ......+..||+++|.+||.+| +.|+|+.||+||+|+||+|++|||.+||
T Consensus 355 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gi~e~i~~sI~~c-d~d~r~~L~~nIvLsGGst~~pGf~~Rl 433 (498)
T 3qb0_A 355 EAVSKSTSPAANSADTPNETGKRPLEEEKPPKENNELIGLADLVYSSIMSS-DVDLRATLAHNVVLTGGTSSIPGLSDRL 433 (498)
T ss_dssp ----------------------------------CCSCCHHHHHHHHHHTS-CTTTHHHHHTTEEEESGGGGSTTHHHHH
T ss_pred ccccccccccccccccccccccccccccccccccccCCCchHHHHHHHHhC-CHHHHHHHhcCEEEeCCccCchhHHHHH
Confidence 000 00 0000125789999999999999 9999999999999999999999999999
Q ss_pred HHHHHhhCCCCCCcceEEEcCC--CCCCccceEeceeeeccccCccceeeeHHHHHhcCc-ceeeecc
Q 007563 517 EERVLHAIPSNEAIDMVEVLQS--RTNPTYVSWKGGAVLGILDFGRDAWIHREDWIRNGI-HIGSGRK 581 (598)
Q Consensus 517 ~~eL~~~~p~~~~i~~V~v~~~--~~dp~~~aWkGgSIla~L~s~~~~wItk~eyee~G~-~i~~~K~ 581 (598)
++||..+.| .. +|+|... +.++.+++|+||||||+|++|+++||||+||+|.|+ +|+++||
T Consensus 434 ~~El~~l~p-~~---~i~v~~~~~~~er~~s~WiGgsilasl~~f~~~witk~EY~E~G~~~iv~~kc 497 (498)
T 3qb0_A 434 MTELNKILP-SL---KFRILTTGHTIERQYQSWLGGSILTSLGTFHQLWVGKKEYEEVGVERLLNDRF 497 (498)
T ss_dssp HHHHHHHST-TS---CCCEECCSCTGGGGSHHHHHHHHHHTCHHHHHTSEEHHHHHTTCCHHHHHHTT
T ss_pred HHHHHHhCC-CC---eeEEEcCCCCCccCccEEcccEEEecCcchhceEEEHHHHhhhCcHhhccccC
Confidence 999999999 44 3456543 268999999999999999999999999999999999 9999988
No 4
>3dwl_A Actin-related protein 3; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}
Probab=100.00 E-value=9.6e-65 Score=549.52 Aligned_cols=326 Identities=21% Similarity=0.299 Sum_probs=262.5
Q ss_pred CceEEccccccCCCCCCceEecceecCeeeecCCCCccccHHHHHHHHHHHhhhhcCCCCCCCCccceEEecCCCCCcHH
Q 007563 172 REFICGEEALRVSPTEPYCIHRPIRRGHLNISQHYPMQQVLEDLYAIWDWILTEKLHIPRSERNLYSAILVLPESFDNRE 251 (598)
Q Consensus 172 ~~~~vGeeAl~~~~~~~~~l~~Pi~~G~~n~~~~~s~~~~~~dle~i~~~~l~~~L~i~~~~~~~y~~VLvip~~~~~~~ 251 (598)
++++||+||+... ...+.++|||++|.+. ||+++|.||+|+|++.|++++.++ +||++++++++..
T Consensus 72 ~~~~vG~ea~~~~-~~~l~~~~Pi~~GvI~---------dwd~~e~iw~~~~~~~L~v~~~~~----pvlltep~~~~~~ 137 (427)
T 3dwl_A 72 LDFFIGNDALKKA-SAGYSLDYPIRHGQIE---------NWDHMERFWQQSLFKYLRCEPEDH----YFLLTEPPLNPPE 137 (427)
T ss_dssp SCCEETHHHHHTH-HHHCCCCCSEETTEEC---------CHHHHHHHHHHHHHTTSCCCGGGC----EEEEEECTTCCHH
T ss_pred CCeEEchHHhhCc-ccCcEEecCcccCeec---------cHHHHHHHHHHHHhHhhCCCCcCC----cEEEEcCCCCCHH
Confidence 5789999999874 1369999999999999 999999999999999999998877 7999999999988
Q ss_pred HHH-HHHHHHHhcCCCeEeeehhhHHHHhhcC--------CceEEEEEeCCCcEEEEEeeCCeeeccCcEEeccccccCh
Q 007563 252 IKE-MLSIVLRDLRFASAVVHQEGLAAVFGNG--------LSTACVVNMGAQVTSVICVEDGVALPNTEKTLPFGGEVQI 322 (598)
Q Consensus 252 vr~-l~ellfe~~~f~~v~~~qesv~a~fgaG--------~~sa~VVDiGa~~TsV~pV~dG~~l~~s~~~l~~GG~~~~ 322 (598)
.|+ |++++||.|||++++++.+++||+||+| .++|||||+|++.|+|+||+||+++.+++.++++||+
T Consensus 138 ~re~~~ei~FE~~~~p~v~l~~~~vla~~a~G~~~~~~~~~~tglVVDiG~g~T~v~PV~~G~~l~~~~~rl~~gG~--- 214 (427)
T 3dwl_A 138 NRENTAEIMFESFNCAGLYIAVQAVLALAASWTSSKVTDRSLTGTVVDSGDGVTHIIPVAEGYVIGSSIKTMPLAGR--- 214 (427)
T ss_dssp HHHHHHHHHTTTTCCSEEEEEEHHHHHHHGGGGSTTTCSCCCCEEEEEESSSCEEEEEEETTEECGGGCEEESCCHH---
T ss_pred HHHHHHHHHHHhccCceeeecchHHHHHHhcCCcccccCCCceEEEEECCCCceEEEEEECCEEehhhheeccccHH---
Confidence 886 9999999999999999999999999999 6899999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcCCCCCcccccccchhhHHHHHHHHHHceeccCCccccccccccccCCCCCCCcceeeeeccCCCCC
Q 007563 323 LDISRCLLWTQRHHQTWPQIRTDILTKAMDLLMLNRIKESYCEIKEGEIDAVAVVHSYEDGMPPGSHKTRLIALNVPPMG 402 (598)
Q Consensus 323 ~dit~~l~~lL~~~~~~p~~~~~~l~~~~d~~l~e~lKe~~c~v~~~~~~~~~~~~~~~~~~p~~~~k~~~~~~~~aP~~ 402 (598)
++|++|.++|+.++. . ..+.+++++|||++|+++.+... ....+.. .+.....+. +.
T Consensus 215 -~lt~~L~~lL~~~~~-------~---~~~~~~~~~IKe~~cyv~~d~~~---e~~~~~~-~~~~~~~~~-----l~--- 271 (427)
T 3dwl_A 215 -DVTYFVQSLLRDRNE-------P---DSSLKTAERIKEECCYVCPDIVK---EFSRFDR-EPDRYLKYA-----SE--- 271 (427)
T ss_dssp -HHHHHHHHTTC------------------CHHHHHHHHHHCCCCSCHHH---HHHHTTC------CCBC-----C----
T ss_pred -HHHHHHHHHHHHcCC-------C---chhHHHHHHHHHhcCcccCCHHH---HHHHhhc-CccccceeE-----ee---
Confidence 999999999876642 1 35678999999999999864110 0111110 010000000 00
Q ss_pred CCCCcccCCCCCCCCCCCCCCCcccccCCCc--cccCC-CCCCCCCCCC-CCCCCCCCCCCCCCccCCCCCccc-CCCHH
Q 007563 403 LFYPKLLVPDVYPPPPRSWFNDYEDMLEDTW--HTDFP-RRSDISDNFY-PGINVGLPMWESYPVLTTKPKKEE-KIGLA 477 (598)
Q Consensus 403 lF~P~~~~~~~~~~p~~~~~~d~~d~~~d~~--~~~~~-er~~~~E~lf-p~~~~~~~~~~~~~~~~~~~~~~~-~~~L~ 477 (598)
.+++. .+.++ |||.++|.|| |+..+ .+ ..+|+
T Consensus 272 --------------------------~~~g~~~~i~ig~erf~~pE~LF~P~~~g-----------------~~~~~gI~ 308 (427)
T 3dwl_A 272 --------------------------SITGHSTTIDVGFERFLAPEIFFNPEIAS-----------------SDFLTPLP 308 (427)
T ss_dssp ----------------------------------CBCCTHHHHSGGGGTCGGGTC-----------------SSCCSCHH
T ss_pred --------------------------CCCCCeeEEEEChHhhhChhhccCchhcC-----------------CccCCCcc
Confidence 01121 33344 7899999999 66554 23 47999
Q ss_pred HHHHHHHhcCCChhhHHHhhcCeEEecCCCCCCChHHHHHHHHHhhCCCCCC-----------cceEEEcCCCCCCccce
Q 007563 478 EAVTSSILSTGRIDLQRKLFCSIQLIGGVALTGGLIPAVEERVLHAIPSNEA-----------IDMVEVLQSRTNPTYVS 546 (598)
Q Consensus 478 ~aI~~sI~~~~~~d~r~~L~~nIvLvGG~S~ipG~~~rL~~eL~~~~p~~~~-----------i~~V~v~~~~~dp~~~a 546 (598)
++|.+||++| |.|+|++||+||+|+||+|++|||.+||++||+.+.|.... --+|+|.. +.+|.+++
T Consensus 309 ~~i~~sI~~c-~~dlr~~L~~nIvLtGG~sl~~G~~~RL~~El~~l~~~~~~~~~~~~~~~p~~~~vkv~~-~~~r~~s~ 386 (427)
T 3dwl_A 309 ELVDNVVQSS-PIDVRKGLYKNIVLSGGSTLFKNFGNRLQRDLKRIVDERIHRSEMLSGAKSGGVDVNVIS-HKRQRNAV 386 (427)
T ss_dssp HHHHHHHHTS-CHHHHHHHHHCEEEESGGGCSTTTTHHHHHHHHHHHTTC-------------CCCCCEEC-CTTCTTHH
T ss_pred HHHHHHHHhC-CHHHHHHHhCCEEEEccCcCCCChHHHHHHHHHHhhhhhccccccccccCCCceeEEEec-CCccccce
Confidence 9999999999 99999999999999999999999999999999988743110 01456664 35899999
Q ss_pred EeceeeeccccCccceeeeHHHHHhcCcceeeeccc
Q 007563 547 WKGGAVLGILDFGRDAWIHREDWIRNGIHIGSGRKY 582 (598)
Q Consensus 547 WkGgSIla~L~s~~~~wItk~eyee~G~~i~~~K~~ 582 (598)
|+||||||+|++|+++||||+||+|+|++|+++|+.
T Consensus 387 WiGGSilasl~~f~~~witk~EYeE~G~~iv~~~~~ 422 (427)
T 3dwl_A 387 WFGGSLLAQTPEFGSYCHTKADYEEYGASIARRYQI 422 (427)
T ss_dssp HHHHHHHHHSTTHHHHSEEHHHHHHSCGGGGSCCCC
T ss_pred ecCceeeccccchhheeEEHHHHhhhChHhheeccc
Confidence 999999999999999999999999999999998873
No 5
>2fxu_A Alpha-actin-1, actin, alpha skeletal muscle; actin complexed to bistramide A, structural protein; HET: HIC ATP BID; 1.35A {Oryctolagus cuniculus} SCOP: c.55.1.1 c.55.1.1 PDB: 1h1v_A* 1kxp_A* 1lot_B* 1m8q_7* 1ma9_B* 1mvw_1* 1nwk_A* 1o18_1* 1o19_1* 1o1a_1* 1o1b_0* 1o1c_0* 1o1d_0* 1o1e_1* 1o1f_0* 1o1g_1* 1j6z_A* 1qz6_A* 1rdw_X* 1rfq_A* ...
Probab=100.00 E-value=4.4e-59 Score=498.35 Aligned_cols=322 Identities=19% Similarity=0.370 Sum_probs=263.6
Q ss_pred CceEEccccccCCCCCCceEecceecCeeeecCCCCccccHHHHHHHHHHHhhhhcCCCCCCCCccceEEecCCCCCcHH
Q 007563 172 REFICGEEALRVSPTEPYCIHRPIRRGHLNISQHYPMQQVLEDLYAIWDWILTEKLHIPRSERNLYSAILVLPESFDNRE 251 (598)
Q Consensus 172 ~~~~vGeeAl~~~~~~~~~l~~Pi~~G~~n~~~~~s~~~~~~dle~i~~~~l~~~L~i~~~~~~~y~~VLvip~~~~~~~ 251 (598)
++++||++|...+ ..+.++|||++|.+. ||++++.||+|+|++.|++++.++ +|+++++++.+..
T Consensus 50 ~~~~vG~~a~~~~--~~~~~~~Pi~~G~i~---------d~d~~e~i~~~~~~~~L~~~~~~~----~vvit~p~~~~~~ 114 (375)
T 2fxu_A 50 KDSYVGDEAQSKR--GILTLKYPIEHGIIT---------NWDDMEKIWHHTFYNELRVAPEEH----PTLLTEAPLNPKA 114 (375)
T ss_dssp -CCEEHHHHHHHT--TSEEEECSEETTEEC---------CHHHHHHHHHHHHHTTSCCCGGGS----CEEEEECTTCCHH
T ss_pred CCeEechhHhhcC--cccceeccccCCccc---------CHHHHHHHHHHHHHHhcCCCCcCC----cEEEEeCCCCcHH
Confidence 3578999998874 469999999999998 999999999999988899988776 5888888887777
Q ss_pred HHH-HHHHHHHhcCCCeEeeehhhHHHHhhcCCceEEEEEeCCCcEEEEEeeCCeeeccCcEEeccccccChHHHHHHHH
Q 007563 252 IKE-MLSIVLRDLRFASAVVHQEGLAAVFGNGLSTACVVNMGAQVTSVICVEDGVALPNTEKTLPFGGEVQILDISRCLL 330 (598)
Q Consensus 252 vr~-l~ellfe~~~f~~v~~~qesv~a~fgaG~~sa~VVDiGa~~TsV~pV~dG~~l~~s~~~l~~GG~~~~~dit~~l~ 330 (598)
.|+ +++++||.||+++++++++++||+||+|++++||||+|+++|+|+||+||+++..+..++++||+ ++|++|.
T Consensus 115 ~r~~~~e~~fe~~g~~~~~~~~e~~aaa~a~g~~~~lVvDiG~gtt~v~~v~~G~~~~~~~~~~~~GG~----~lt~~l~ 190 (375)
T 2fxu_A 115 NREKMTQIMFETFNVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVTHNVPIYEGYALPHAIMRLDLAGR----DLTDYLM 190 (375)
T ss_dssp HHHHHHHHHHHTTCCSEEEEEEHHHHHHHHTTCSSEEEEEECSSCEEEEEEETTEECGGGCEEESCCHH----HHHHHHH
T ss_pred HHHHHHHHHHHhcCcceEEEccchheeeeecCCCeEEEEEcCCCceEEeEeECCEEeccceEEeccCHH----HHHHHHH
Confidence 776 99999999999999999999999999999999999999999999999999999999999999999 9999999
Q ss_pred HHHHhcCCCCCcccccccchhhHHHHHHHHHHceeccCCccccccccccccCCCCCC-CcceeeeeccCCCCCCCCCccc
Q 007563 331 WTQRHHQTWPQIRTDILTKAMDLLMLNRIKESYCEIKEGEIDAVAVVHSYEDGMPPG-SHKTRLIALNVPPMGLFYPKLL 409 (598)
Q Consensus 331 ~lL~~~~~~p~~~~~~l~~~~d~~l~e~lKe~~c~v~~~~~~~~~~~~~~~~~~p~~-~~k~~~~~~~~aP~~lF~P~~~ 409 (598)
++|+.++. ++....+...+++||+++|++..+.... ..... .... ...+
T Consensus 191 ~~l~~~~~-------~~~~~~~~~~~e~iK~~~~~v~~~~~~e---~~~~~--~~~~~~~~~------------------ 240 (375)
T 2fxu_A 191 KILTERGY-------SFVTTAEREIVRDIKEKLCYVALDFENE---MATAA--SSSSLEKSY------------------ 240 (375)
T ss_dssp HHHHHHTC-------CCCSHHHHHHHHHHHHHHCCCCSSHHHH---HHHHH--HCSTTCEEE------------------
T ss_pred HHHHhcCC-------CCCcHHHHHHHHHHHHHHHhhcccHHHH---HHhhc--ccCccCeEE------------------
Confidence 99977641 3444567889999999999997531100 00000 0000 0001
Q ss_pred CCCCCCCCCCCCCCCcccccCCCccccCC-CCCCCCCCCC-CCCCCCCCCCCCCCccCCCCCcccCCCHHHHHHHHHhcC
Q 007563 410 VPDVYPPPPRSWFNDYEDMLEDTWHTDFP-RRSDISDNFY-PGINVGLPMWESYPVLTTKPKKEEKIGLAEAVTSSILST 487 (598)
Q Consensus 410 ~~~~~~~p~~~~~~d~~d~~~d~~~~~~~-er~~~~E~lf-p~~~~~~~~~~~~~~~~~~~~~~~~~~L~~aI~~sI~~~ 487 (598)
.+||+..+.++ +|+.++|.|| |...+ .+..+|+++|.++|.+|
T Consensus 241 ------------------~lpdg~~i~i~~erf~~~E~lf~p~~~~-----------------~~~~~i~~~i~~~i~~~ 285 (375)
T 2fxu_A 241 ------------------ELPDGQVITIGNERFRCPETLFQPSFIG-----------------MESAGIHETTYNSIMKC 285 (375)
T ss_dssp ------------------ECTTSCEEEESTHHHHHHHTTTCGGGGT-----------------CCSCCHHHHHHHHHHTS
T ss_pred ------------------ECCCCCEEEEChhheechHhhCCCccCC-----------------CCCCCHHHHHHHHHHhC
Confidence 12233334344 5788899999 55443 35679999999999999
Q ss_pred CChhhHHHhhcCeEEecCCCCCCChHHHHHHHHHhhCCCCCCcceEEEcCCCCCCccceEeceeeeccccCccceeeeHH
Q 007563 488 GRIDLQRKLFCSIQLIGGVALTGGLIPAVEERVLHAIPSNEAIDMVEVLQSRTNPTYVSWKGGAVLGILDFGRDAWIHRE 567 (598)
Q Consensus 488 ~~~d~r~~L~~nIvLvGG~S~ipG~~~rL~~eL~~~~p~~~~i~~V~v~~~~~dp~~~aWkGgSIla~L~s~~~~wItk~ 567 (598)
+.|+|+++++||+||||+|++|||.+||+++|..+.|...++ +|.. +.+|.+++|+|||++|++++|+++||||+
T Consensus 286 -~~~~~~~l~~~IvLtGG~s~~pG~~~rl~~el~~~~p~~~~v---~v~~-~~~p~~~~w~G~si~a~l~~f~~~~itk~ 360 (375)
T 2fxu_A 286 -DIDIRKDLYANNVMSGGTTMYPGIADRMQKEITALAPSTMKI---KIIA-PPERKYSVWIGGSILASLSTFQQMWITKQ 360 (375)
T ss_dssp -CHHHHHHHHTCEEEESGGGCSTTHHHHHHHHHHHHSCTTCCC---CEEC-CTTTTSHHHHHHHHHHHCGGGGGGSEEHH
T ss_pred -CHHHHHHHHhCcEeeCCCCCCccHHHHHHHHHHHhCCCCeeE---EEEc-CCCCCccEEcchHHhhCcccHhhceeeHH
Confidence 899999999999999999999999999999999988876543 4443 35899999999999999999999999999
Q ss_pred HHHhcCcceeeeccc
Q 007563 568 DWIRNGIHIGSGRKY 582 (598)
Q Consensus 568 eyee~G~~i~~~K~~ 582 (598)
||+|+|++++++||+
T Consensus 361 ey~e~G~~~~~~k~~ 375 (375)
T 2fxu_A 361 EYDEAGPSIVHRKCF 375 (375)
T ss_dssp HHHHHCGGGGC----
T ss_pred HHhhhChHHHhhhcc
Confidence 999999999999985
No 6
>1k8k_B ARP2, actin-like protein 2; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: c.55.1.1 PDB: 1tyq_B* 1u2v_B* 2p9i_B* 2p9l_B 2p9n_B* 2p9p_B* 2p9s_B* 2p9u_B* 3dxk_B* 3dxm_B* 3rse_B 2p9k_B*
Probab=100.00 E-value=2.6e-60 Score=511.15 Aligned_cols=320 Identities=21% Similarity=0.369 Sum_probs=135.0
Q ss_pred CceEEccccccCCCCCCceEecceecCeeeecCCCCccccHHHHHHHHHHHh-hhhcCCCCCCCCccceEEecCCCCCcH
Q 007563 172 REFICGEEALRVSPTEPYCIHRPIRRGHLNISQHYPMQQVLEDLYAIWDWIL-TEKLHIPRSERNLYSAILVLPESFDNR 250 (598)
Q Consensus 172 ~~~~vGeeAl~~~~~~~~~l~~Pi~~G~~n~~~~~s~~~~~~dle~i~~~~l-~~~L~i~~~~~~~y~~VLvip~~~~~~ 250 (598)
++++||++|...+ ..+.+++||++|.+. ||++++.||+|+| ++.|++++.++ +||++++++++.
T Consensus 53 ~~~~vG~ea~~~~--~~~~~~~Pi~~G~i~---------dwd~~e~i~~~~~~~~~L~~~~~~~----~vllt~p~~~~~ 117 (394)
T 1k8k_B 53 KDLMVGDEASELR--SMLEVNYPMENGIVR---------NWDDMKHLWDYTFGPEKLNIDTRNC----KILLTEPPMNPT 117 (394)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CCeEEChHHHhcC--CCceeeccccCCEEe---------cHHHHHHHHHHHhcccccCcCCCCC----cEEEEECCCCCH
Confidence 3578999998874 578999999999998 9999999999999 88999988877 688888888877
Q ss_pred HHHH-HHHHHHHhcCCCeEeeehhhHHHHhhcCCceEEEEEeCCCcEEEEEeeCCeeeccCcEEeccccccChHHHHHHH
Q 007563 251 EIKE-MLSIVLRDLRFASAVVHQEGLAAVFGNGLSTACVVNMGAQVTSVICVEDGVALPNTEKTLPFGGEVQILDISRCL 329 (598)
Q Consensus 251 ~vr~-l~ellfe~~~f~~v~~~qesv~a~fgaG~~sa~VVDiGa~~TsV~pV~dG~~l~~s~~~l~~GG~~~~~dit~~l 329 (598)
..|+ +++++||.|||++++++.+++||+||+|+++|||||+|++.|+|+||+||+++.++..++++||+ ++|++|
T Consensus 118 ~~r~~~~e~~fe~~~~~~~~~~~~~~~a~~a~g~~~~lVVDiG~g~T~v~pv~~G~~~~~~~~~~~~GG~----~lt~~l 193 (394)
T 1k8k_B 118 KNREKIVEVMFETYQFSGVYVAIQAVLTLYAQGLLTGVVVDSGDGVTHICPVYEGFSLPHLTRRLDIAGR----DITRYL 193 (394)
T ss_dssp ------------------------------------CCEEEECSSCEEEECEETTEECSTTCEEESCCHH----HHHHHH
T ss_pred HHHHHHHHHhhhccCCCeEEEEhhHHHHHHhCCCceEEEEEcCCCceEeeeeECCEEcccceEEeeccHH----HHHHHH
Confidence 7665 99999999999999999999999999999999999999999999999999999999999999999 999999
Q ss_pred HHHHHhcCCCCCcccccccchhhHHHHHHHHHHceeccCCccccccccccccCCCCCCCcceeeeeccCCCCCCCCCccc
Q 007563 330 LWTQRHHQTWPQIRTDILTKAMDLLMLNRIKESYCEIKEGEIDAVAVVHSYEDGMPPGSHKTRLIALNVPPMGLFYPKLL 409 (598)
Q Consensus 330 ~~lL~~~~~~p~~~~~~l~~~~d~~l~e~lKe~~c~v~~~~~~~~~~~~~~~~~~p~~~~k~~~~~~~~aP~~lF~P~~~ 409 (598)
.++|+.++ +++....++..+++||+++|+++.+.... ...... .......+
T Consensus 194 ~~~l~~~~-------~~~~~~~~~~~ae~iK~~~~~v~~d~~~~---~~~~~~-~~~~~~~~------------------ 244 (394)
T 1k8k_B 194 IKLLLLRG-------YAFNHSADFETVRMIKEKLCYVGYNIEQE---QKLALE-TTVLVESY------------------ 244 (394)
T ss_dssp HHHHHHTT-------CCCCTTTTHHHHHHHHHHHCCCCSSHHHH---HHHHHH-CSTTCEEE------------------
T ss_pred HHHHHhcC-------CCCCcHHHHHHHHHHHHhheeEecCHHHH---HHhhcc-CCcCceEE------------------
Confidence 99998764 23444568899999999999997531110 000000 00000001
Q ss_pred CCCCCCCCCCCCCCCcccccCCCccccCC-CCCCCCCCCC-CCCCCCCCCCCCCCccCCCCCcccCCCHHHHHHHHHhcC
Q 007563 410 VPDVYPPPPRSWFNDYEDMLEDTWHTDFP-RRSDISDNFY-PGINVGLPMWESYPVLTTKPKKEEKIGLAEAVTSSILST 487 (598)
Q Consensus 410 ~~~~~~~p~~~~~~d~~d~~~d~~~~~~~-er~~~~E~lf-p~~~~~~~~~~~~~~~~~~~~~~~~~~L~~aI~~sI~~~ 487 (598)
.+||+..+.++ +|+.++|.|| |+..+ .+..+|+++|.++|.+|
T Consensus 245 ------------------~lpdg~~i~i~~erf~~~E~Lf~p~~~~-----------------~~~~~i~~~i~~~i~~~ 289 (394)
T 1k8k_B 245 ------------------TLPDGRIIKVGGERFEAPEALFQPHLIN-----------------VEGVGVAELLFNTIQAA 289 (394)
T ss_dssp ------------------ECTTSCEEEECTHHHHTGGGGTCGGGGT-----------------CCSCCHHHHHHHHHHHS
T ss_pred ------------------ECCCCCEEEECchhhcChHhhCCchhcc-----------------CCCCCHHHHHHHHHHhC
Confidence 12233334444 6888999999 65543 35679999999999999
Q ss_pred CChhhHHHhhcCeEEecCCCCCCChHHHHHHHHHhhC-----------CCCCCcceEEEcCCCCCCccceEeceeeeccc
Q 007563 488 GRIDLQRKLFCSIQLIGGVALTGGLIPAVEERVLHAI-----------PSNEAIDMVEVLQSRTNPTYVSWKGGAVLGIL 556 (598)
Q Consensus 488 ~~~d~r~~L~~nIvLvGG~S~ipG~~~rL~~eL~~~~-----------p~~~~i~~V~v~~~~~dp~~~aWkGgSIla~L 556 (598)
+.|+|++|++||+|+||+|++|||.+||++||..+. |... +|+|.. +.+|.+++|+|||++|+|
T Consensus 290 -~~d~r~~l~~nIvLtGG~s~~~G~~~rl~~el~~~~~~~~~~~~~~~p~~~---~v~v~~-~~~~~~~~w~Ggsilasl 364 (394)
T 1k8k_B 290 -DIDTRSEFYKHIVLSGGSTMYPGLPSRLERELKQLYLERVLKGDVEKLSKF---KIRIED-PPRRKHMVFLGGAVLADI 364 (394)
T ss_dssp -CTTTHHHHHTTCEEESGGGCSTTHHHHHHHHHHHHHHHHTCSSCCCTTCCC---CC-----------------------
T ss_pred -CHHHHHHHHhCEEEeCcccccccHHHHHHHHHHHHHhhhhcccccCCCCce---EEEEec-CCCcceeEEhhhHHhhCC
Confidence 899999999999999999999999999999999876 5543 346653 357899999999999999
Q ss_pred cCcc-ceeeeHHHHHhcCcceeee
Q 007563 557 DFGR-DAWIHREDWIRNGIHIGSG 579 (598)
Q Consensus 557 ~s~~-~~wItk~eyee~G~~i~~~ 579 (598)
++|+ ++||||+||+|+|++++++
T Consensus 365 ~~f~~~~~itk~eY~e~G~~~~~~ 388 (394)
T 1k8k_B 365 MKDKDNFWMTRQEYQEKGVRVLEK 388 (394)
T ss_dssp ------------------------
T ss_pred cCCccceeecHHHHhhhCHHHHHh
Confidence 9999 9999999999999999975
No 7
>1k8k_A ARP3, actin-like protein 3, actin-2; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: c.55.1.1 c.55.1.1 PDB: 1tyq_A* 1u2v_A* 2p9i_A* 2p9k_A* 2p9l_A 2p9n_A* 2p9p_A* 2p9s_A* 2p9u_A* 3dxk_A* 3dxm_A* 3rse_A
Probab=100.00 E-value=1e-55 Score=478.58 Aligned_cols=326 Identities=19% Similarity=0.291 Sum_probs=259.4
Q ss_pred CceEEccccccCCCCCCceEecceecCeeeecCCCCccccHHHHHHHHHHHhhhhcCCCCCCCCccceEEecCCCCCcHH
Q 007563 172 REFICGEEALRVSPTEPYCIHRPIRRGHLNISQHYPMQQVLEDLYAIWDWILTEKLHIPRSERNLYSAILVLPESFDNRE 251 (598)
Q Consensus 172 ~~~~vGeeAl~~~~~~~~~l~~Pi~~G~~n~~~~~s~~~~~~dle~i~~~~l~~~L~i~~~~~~~y~~VLvip~~~~~~~ 251 (598)
.+++||++|+..+ ++.+++||++|.++ +|++++.||+|+|++.|+++++++ +|+++++++.+..
T Consensus 58 ~~~~vG~~a~~~~---~~~~~~pi~~G~i~---------d~d~~e~i~~~~~~~~L~~~~~~~----~vvit~p~~~~~~ 121 (418)
T 1k8k_A 58 LDFFIGDEAIEKP---TYATKWPIRHGIVE---------DWDLMERFMEQVIFKYLRAEPEDH----YFLLTEPPLNTPE 121 (418)
T ss_dssp GCEEEGGGGTSCT---TSEEECCEETTEES---------CHHHHHHHHHHHHHTTTCCCGGGC----CEEEEECTTCCHH
T ss_pred cCeEEChHHHhcC---CCEEeccccCCEEC---------CHHHHHHHHHHHHHhccCCCCCCC----cEEEEeCCCCCHH
Confidence 3589999999884 59999999999998 999999999999988899988776 5888877777766
Q ss_pred HHH-HHHHHHHhcCCCeEeeehhhHHHHhh---------cCCceEEEEEeCCCcEEEEEeeCCeeeccCcEEeccccccC
Q 007563 252 IKE-MLSIVLRDLRFASAVVHQEGLAAVFG---------NGLSTACVVNMGAQVTSVICVEDGVALPNTEKTLPFGGEVQ 321 (598)
Q Consensus 252 vr~-l~ellfe~~~f~~v~~~qesv~a~fg---------aG~~sa~VVDiGa~~TsV~pV~dG~~l~~s~~~l~~GG~~~ 321 (598)
.|+ +.+++||.+||++++++.+++||+|+ .|. +|||||+|++.|+|+||++|+++..+..++++||+
T Consensus 122 ~r~~~~e~~fe~~g~~~~~l~~ep~aa~~a~~~~~~~~~~~~-~glVvDiG~gtt~v~~v~~G~~~~~~~~~~~lGG~-- 198 (418)
T 1k8k_A 122 NREYTAEIMFESFNVPGLYIAVQAVLALAASWTSRQVGERTL-TGTVIDSGDGVTHVIPVAEGYVIGSCIKHIPIAGR-- 198 (418)
T ss_dssp HHHHHHHHHHHTSCCSEEEEEEHHHHHHHHGGGSTTCCSCCC-CEEEEEESSSCEEEEEEETTEECGGGCEEESCSHH--
T ss_pred HHHHHHHHHHHhcCCCEEEEechHHHHhhhhhcccccCCCCC-eEEEEEcCCCceEEEEeECCEEcccceEEEeCcHH--
Confidence 665 99999999999999999999999999 566 99999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHhcCCCCCcccccccchhhHHHHHHHHHHceeccCCccccccccccccCCCCCC-CcceeeeeccCCC
Q 007563 322 ILDISRCLLWTQRHHQTWPQIRTDILTKAMDLLMLNRIKESYCEIKEGEIDAVAVVHSYEDGMPPG-SHKTRLIALNVPP 400 (598)
Q Consensus 322 ~~dit~~l~~lL~~~~~~p~~~~~~l~~~~d~~l~e~lKe~~c~v~~~~~~~~~~~~~~~~~~p~~-~~k~~~~~~~~aP 400 (598)
++|++|.++|..++. ++....++..++++|+++|++..+.... ...+.. .+.. ...+.+ |
T Consensus 199 --~lt~~l~~~l~~~~~-------~~~~~~~~~~~e~iK~~~~~v~~~~~~e---~~~~~~-~~~~~~~~~~l------p 259 (418)
T 1k8k_A 199 --DITYFIQQLLRDREV-------GIPPEQSLETAKAVKERYSYVCPDLVKE---FNKYDT-DGSKWIKQYTG------I 259 (418)
T ss_dssp --HHHHHHHHHHHTTCC-------CCCGGGHHHHHHHHHHHHCCCCSCHHHH---HHHHHH-SGGGTCEEEEE------E
T ss_pred --HHHHHHHHHHHhcCC-------CCCCHHHHHHHHHHHHhhchhcccHHHH---HHhhcc-cccccceeEEC------C
Confidence 999999999976542 2334467899999999999997531100 000000 0000 001111 1
Q ss_pred CCCCCCcccCCCCCCCCCCCCCCCcccccCCCccccCC-CCCCCCCCCC-CCCCCCCCCCCCCCccCCCCCccc-CCCHH
Q 007563 401 MGLFYPKLLVPDVYPPPPRSWFNDYEDMLEDTWHTDFP-RRSDISDNFY-PGINVGLPMWESYPVLTTKPKKEE-KIGLA 477 (598)
Q Consensus 401 ~~lF~P~~~~~~~~~~p~~~~~~d~~d~~~d~~~~~~~-er~~~~E~lf-p~~~~~~~~~~~~~~~~~~~~~~~-~~~L~ 477 (598)
.+. . .....+.++ +|+.++|.|| |...+ .+ ..+|+
T Consensus 260 d~~------~-------------------~~~~~i~l~~erf~~~E~lF~P~~~~-----------------~~~~~~i~ 297 (418)
T 1k8k_A 260 NAI------S-------------------KKEFSIDVGYERFLGPEIFFHPEFAN-----------------PDFTQPIS 297 (418)
T ss_dssp CTT------T-------------------CCEEEEEECTHHHHHHHTTTCGGGTC-----------------TTCCCCHH
T ss_pred CCC------C-------------------CcccEEEeChHHhhCcHhhCCCccCC-----------------CCCCCCHH
Confidence 000 0 000122233 5778889999 65433 12 36899
Q ss_pred HHHHHHHhcCCChhhHHHhhcCeEEecCCCCCCChHHHHHHHHHhhC----------------CCCCCcceEEEcCCCCC
Q 007563 478 EAVTSSILSTGRIDLQRKLFCSIQLIGGVALTGGLIPAVEERVLHAI----------------PSNEAIDMVEVLQSRTN 541 (598)
Q Consensus 478 ~aI~~sI~~~~~~d~r~~L~~nIvLvGG~S~ipG~~~rL~~eL~~~~----------------p~~~~i~~V~v~~~~~d 541 (598)
++|.++|.+| +.|+|+++++||+|+||+|++|||.+||+++|.... |... +|+|.. +.+
T Consensus 298 ~~i~~si~~~-~~~~~~~l~~~IvL~GG~s~~pg~~~rl~~el~~~~~~~~~~~~~~~~~~~~p~~~---~v~v~~-~~~ 372 (418)
T 1k8k_A 298 EVVDEVIQNC-PIDVRRPLYKNIVLSGGSTMFRDFGRRLQRDLKRTVDARLKLSEELSGGRLKPKPI---DVQVIT-HHM 372 (418)
T ss_dssp HHHHHHHHHS-CGGGTTHHHHCEEEESGGGCSTTHHHHHHHHHHHHHHHHHHHHHHHC----CCCCC---CCCEEC-CTT
T ss_pred HHHHHHHHcC-CHHHHHHHHhceEEeCCccccccHHHHHHHHHHHhhccccccccccccccCCCCce---eEEEeC-CCc
Confidence 9999999999 899999999999999999999999999999998875 3333 345654 358
Q ss_pred CccceEeceeeeccccCccceeeeHHHHHhcCcceeeeccc
Q 007563 542 PTYVSWKGGAVLGILDFGRDAWIHREDWIRNGIHIGSGRKY 582 (598)
Q Consensus 542 p~~~aWkGgSIla~L~s~~~~wItk~eyee~G~~i~~~K~~ 582 (598)
|.+++|+||||||+|++|+++||||+||+|+|++++++||+
T Consensus 373 ~~~~~w~Ggsilasl~~f~~~~itk~ey~e~G~~~~~~~~~ 413 (418)
T 1k8k_A 373 QRYAVWFGGSMLASTPEFYQVCHTKKDYEEIGPSICRHNPV 413 (418)
T ss_dssp CTTHHHHHHHHHTTSHHHHHHSEEHHHHHHHCGGGGGCCCC
T ss_pred cccceeHhHHHHHcCccHhheEEEHHHHhhhCHHHHhhhcc
Confidence 99999999999999999999999999999999999999774
No 8
>1jce_A ROD shape-determining protein MREB; MBL, actin, HSP-70, FTSZ, structural protein; 2.10A {Thermotoga maritima} SCOP: c.55.1.1 c.55.1.1 PDB: 1jcf_A 1jcg_A* 2wus_A
Probab=99.94 E-value=1.2e-25 Score=236.59 Aligned_cols=279 Identities=16% Similarity=0.225 Sum_probs=191.0
Q ss_pred eEEccccccCCCC--CCceEecceecCeeeecCCCCccccHHHHHHHHHHHhhhhcCCC-CCCCCccceEEe-cCCCCCc
Q 007563 174 FICGEEALRVSPT--EPYCIHRPIRRGHLNISQHYPMQQVLEDLYAIWDWILTEKLHIP-RSERNLYSAILV-LPESFDN 249 (598)
Q Consensus 174 ~~vGeeAl~~~~~--~~~~l~~Pi~~G~~n~~~~~s~~~~~~dle~i~~~~l~~~L~i~-~~~~~~y~~VLv-ip~~~~~ 249 (598)
++||++|.+.... .+..+.+|+++|.+. +|+..+.+|.+++.+..... ..+. .++| +|..|+.
T Consensus 42 ~~vG~~A~~~~~~~~~~~~~~~p~~~g~i~---------~~~~~~~i~~~~l~~~~~~~~~~~~----~~vitvP~~~~~ 108 (344)
T 1jce_A 42 LKVGLEAKNMIGKTPATIKAIRPMRDGVIA---------DYTVALVMLRYFINKAKGGMNLFKP----RVVIGVPIGITD 108 (344)
T ss_dssp EEESHHHHTTTTCCCTTEEEECCEETTEES---------SHHHHHHHHHHHHHHHHTSCCSCCC----EEEEEECTTCCH
T ss_pred EEEcHHHHHhcccCCCCeEEEecCCCCeeC---------ChHHHHHHHHHHHHHHhhccccCCC----eEEEEECCCCCH
Confidence 5688888765322 357778999999987 89999999999996433322 2222 3555 5555665
Q ss_pred HHHHHHHHHHHHhcCCCeEeeehhhHHHHhhcCC-----ceEEEEEeCCCcEEEEEeeCCeeeccCcEEeccccccChHH
Q 007563 250 REIKEMLSIVLRDLRFASAVVHQEGLAAVFGNGL-----STACVVNMGAQVTSVICVEDGVALPNTEKTLPFGGEVQILD 324 (598)
Q Consensus 250 ~~vr~l~ellfe~~~f~~v~~~qesv~a~fgaG~-----~sa~VVDiGa~~TsV~pV~dG~~l~~s~~~l~~GG~~~~~d 324 (598)
.+.+.+.+ +++..|++.+.++.|++||++++|. .+.+|||+|+++|.|+++..|.++. ...+++||+ +
T Consensus 109 ~~r~~~~~-a~~~aG~~~~~li~ep~Aaa~~~~~~~~~~~~~lVvDiGggttdvsv~~~~~~~~--~~~~~lGG~----~ 181 (344)
T 1jce_A 109 VERRAILD-AGLEAGASKVFLIEEPMAAAIGSNLNVEEPSGNMVVDIGGGTTEVAVISLGSIVT--WESIRIAGD----E 181 (344)
T ss_dssp HHHHHHHH-HHHHTTCSEEEEEEHHHHHHHHTTCCTTSSSCEEEEEECSSCEEEEEEETTEEEE--EEEESCSHH----H
T ss_pred HHHHHHHH-HHHHcCCCeEeccCCHHHHHHhcCCCCCCCceEEEEEeCCCeEEEEEEEcCCEEe--eCCCCccCh----h
Confidence 55334555 6899999999999999999999997 5799999999999999999998774 457899999 9
Q ss_pred HHHHHHHHHHhcCCCCCcccccccchhhHHHHHHHHHHceeccCCccccccccccccCCCCCCCcceeeeeccCCCCCCC
Q 007563 325 ISRCLLWTQRHHQTWPQIRTDILTKAMDLLMLNRIKESYCEIKEGEIDAVAVVHSYEDGMPPGSHKTRLIALNVPPMGLF 404 (598)
Q Consensus 325 it~~l~~lL~~~~~~p~~~~~~l~~~~d~~l~e~lKe~~c~v~~~~~~~~~~~~~~~~~~p~~~~k~~~~~~~~aP~~lF 404 (598)
+|+.|.+++..+. .+ ..+...+|++|+++|+......... ..+.+....+ ..|.
T Consensus 182 id~~l~~~l~~~~--------~~--~~~~~~ae~~K~~l~~~~~~~~~~~--------------~~~~~~~~~~-~~g~- 235 (344)
T 1jce_A 182 MDEAIVQYVRETY--------RV--AIGERTAERVKIEIGNVFPSKENDE--------------LETTVSGIDL-STGL- 235 (344)
T ss_dssp HHHHHHHHHHHHH--------CE--ECCHHHHHHHHHHHCBCSCCHHHHH--------------CEEEEEEEET-TTTE-
T ss_pred HHHHHHHHHHHHh--------Cc--ccCHHHHHHHHHHHhccCccccCCc--------------ceEEEecccc-CCCC-
Confidence 9999998876431 11 1346789999999997754210000 0011100000 0000
Q ss_pred CCcccCCCCCCCCCCCCCCCcccccCCCccccCCCCCCCCCCCCCCCCCCCCCCCCCCccCCCCCcccCCCHHHHHHHHH
Q 007563 405 YPKLLVPDVYPPPPRSWFNDYEDMLEDTWHTDFPRRSDISDNFYPGINVGLPMWESYPVLTTKPKKEEKIGLAEAVTSSI 484 (598)
Q Consensus 405 ~P~~~~~~~~~~p~~~~~~d~~d~~~d~~~~~~~er~~~~E~lfp~~~~~~~~~~~~~~~~~~~~~~~~~~L~~aI~~sI 484 (598)
+ ..+.++ |... +.++. .....+.+.|.++|
T Consensus 236 -~--------------------------~~~~i~-~~~~-~~~~~---------------------~~~~~i~~~i~~~l 265 (344)
T 1jce_A 236 -P--------------------------RKLTLK-GGEV-REALR---------------------SVVVAIVESVRTTL 265 (344)
T ss_dssp -E--------------------------EEEEEE-HHHH-HHHTH---------------------HHHHHHHHHHHHHH
T ss_pred -c--------------------------eeEEEe-HHHH-HHHHH---------------------HHHHHHHHHHHHHH
Confidence 0 000000 0000 00110 01235788999999
Q ss_pred hcCCChhhHHHhh-cCeEEecCCCCCCChHHHHHHHHHhhCCCCCCcceEEEcCCCCCCccceEeceeeecc-ccCccc
Q 007563 485 LSTGRIDLQRKLF-CSIQLIGGVALTGGLIPAVEERVLHAIPSNEAIDMVEVLQSRTNPTYVSWKGGAVLGI-LDFGRD 561 (598)
Q Consensus 485 ~~~~~~d~r~~L~-~nIvLvGG~S~ipG~~~rL~~eL~~~~p~~~~i~~V~v~~~~~dp~~~aWkGgSIla~-L~s~~~ 561 (598)
.++ +.+++++++ ++|+|+||+|++|||.++|++++.. +|.+. .+|.+++|.||+++|. +++|++
T Consensus 266 ~~~-~~~~~~~~~~~~IvL~GG~s~~p~l~~~l~~~~~~---------~v~~~---~~p~~ava~Gaa~~a~~~~~~~~ 331 (344)
T 1jce_A 266 EKT-PPELVSDIIERGIFLTGGGSLLRGLDTLLQKETGI---------SVIRS---EEPLTAVAKGAGMVLDKVNILKK 331 (344)
T ss_dssp HTS-CHHHHHHHHHHCEEEESGGGCSBTHHHHHHHHHSS---------CEEEC---SSTTTHHHHHHHHGGGCHHHHTT
T ss_pred HhC-CchhccchhhCcEEEECccccchHHHHHHHHHHCC---------Ccccc---CChHHHHHHHHHHHHhChHHHHH
Confidence 998 788888888 7999999999999999999999851 23442 4789999999999998 466643
No 9
>3h1q_A Ethanolamine utilization protein EUTJ; ethanolamine utilization EUTJ, structural genomics, PSI-2; HET: ATP; 2.80A {Carboxydothermus hydrogenoformans z-29organism_taxid}
Probab=99.62 E-value=8.6e-16 Score=155.64 Aligned_cols=215 Identities=18% Similarity=0.166 Sum_probs=155.4
Q ss_pred EecceecCeeeecCCCCccccHHHHHHHHHHHhhhhcCCCCCCCCccceEEecCCCCCcHHHHHHHHHHHHhcCCCeEee
Q 007563 191 IHRPIRRGHLNISQHYPMQQVLEDLYAIWDWILTEKLHIPRSERNLYSAILVLPESFDNREIKEMLSIVLRDLRFASAVV 270 (598)
Q Consensus 191 l~~Pi~~G~~n~~~~~s~~~~~~dle~i~~~~l~~~L~i~~~~~~~y~~VLvip~~~~~~~vr~l~ellfe~~~f~~v~~ 270 (598)
-..|+++|.+. +|+..+.+|++++.........+.. .++++.+......-++.++.+++.+|++...+
T Consensus 58 ~~~~l~~g~i~---------d~~~~~~~l~~~~~~~~~~~~~~~~---~~v~tvp~~~~~~~~~~~~~~~~~~g~~~~~i 125 (272)
T 3h1q_A 58 WASVVKDGLVV---------DYIGAIQIVRELKAKVERLLGSELF---QAATAIPPGTVGRNAEACGHVVAGAGLELVTL 125 (272)
T ss_dssp ECCCCBTTBCT---------THHHHHHHHHHHHHHHHHHSSSCCC---EEEEECCSCC---CTTHHHHHHHHTTCEEEEE
T ss_pred cccccCCCEEE---------cHHHHHHHHHHHHHHHHHhcCCccC---eEEEEcCCCCCHHHHHHHHHHHHHcCCeeeec
Confidence 34689999988 9999999999998643222111221 24444444333333457788999999999999
Q ss_pred ehhhHHHHhhcCCceEEEEEeCCCcEEEEEeeCCeeeccCcEEeccccccChHHHHHHHHHHHHhcCCCCCcccccccch
Q 007563 271 HQEGLAAVFGNGLSTACVVNMGAQVTSVICVEDGVALPNTEKTLPFGGEVQILDISRCLLWTQRHHQTWPQIRTDILTKA 350 (598)
Q Consensus 271 ~qesv~a~fgaG~~sa~VVDiGa~~TsV~pV~dG~~l~~s~~~l~~GG~~~~~dit~~l~~lL~~~~~~p~~~~~~l~~~ 350 (598)
..++.|+++++|..+++|||+|++.|.++++.+|.++. ...+++||. ++|+.+.+.+.
T Consensus 126 ~~e~~A~a~~~~~~~~~viDiGggst~~~~~~~g~~~~--~~~~~~Gg~----~~~~~l~~~l~---------------- 183 (272)
T 3h1q_A 126 VDEPVAAARALGINDGIVVDIGGGTTGIAVIEKGKITA--TFDEPTGGT----HLSLVLAGSYK---------------- 183 (272)
T ss_dssp ECHHHHHHHHHTCSSEEEEEECSSCEEEEEEETTEEEE--ECCBSCCHH----HHHHHHHHHHT----------------
T ss_pred ccHHHHHHHHHcCCCEEEEEECCCcEEEEEEECCEEEE--EecCCCcHH----HHHHHHHHHhC----------------
Confidence 99999999999999999999999999999999998874 356899999 99999987663
Q ss_pred hhHHHHHHHHHHceeccCCccccccccccccCCCCCCCcceeeeeccCCCCCCCCCcccCCCCCCCCCCCCCCCcccccC
Q 007563 351 MDLLMLNRIKESYCEIKEGEIDAVAVVHSYEDGMPPGSHKTRLIALNVPPMGLFYPKLLVPDVYPPPPRSWFNDYEDMLE 430 (598)
Q Consensus 351 ~d~~l~e~lKe~~c~v~~~~~~~~~~~~~~~~~~p~~~~k~~~~~~~~aP~~lF~P~~~~~~~~~~p~~~~~~d~~d~~~ 430 (598)
.+...++++|+++|.-. + +.+ ++
T Consensus 184 ~~~~~ae~~k~~~~~~~--~----------------------~~~------------~~--------------------- 206 (272)
T 3h1q_A 184 IPFEEAETIKKDFSRHR--E----------------------IMR------------VV--------------------- 206 (272)
T ss_dssp CCHHHHHHHHHSSTTHH--H----------------------HHH------------HH---------------------
T ss_pred CCHHHHHHHHHhcCCHH--H----------------------HHH------------HH---------------------
Confidence 13467899998765100 0 000 00
Q ss_pred CCccccCCCCCCCCCCCCCCCCCCCCCCCCCCccCCCCCcccCCCHHHHHHHHHhcCCChhhHHHhhcCeEEecCCCCCC
Q 007563 431 DTWHTDFPRRSDISDNFYPGINVGLPMWESYPVLTTKPKKEEKIGLAEAVTSSILSTGRIDLQRKLFCSIQLIGGVALTG 510 (598)
Q Consensus 431 d~~~~~~~er~~~~E~lfp~~~~~~~~~~~~~~~~~~~~~~~~~~L~~aI~~sI~~~~~~d~r~~L~~nIvLvGG~S~ip 510 (598)
+ .....+.+.|.+++.++ + ...+|+|+||+|++|
T Consensus 207 --------------~-------------------------~~~~~i~~~i~~~l~~~-~------~~~~ivL~GG~a~~~ 240 (272)
T 3h1q_A 207 --------------R-------------------------PVIEKMALIVKEVIKNY-D------QTLPVYVVGGTAYLT 240 (272)
T ss_dssp --------------H-------------------------HHHHHHHHHHHHHTTTS-C------SSCCEEEESGGGGST
T ss_pred --------------H-------------------------HHHHHHHHHHHHHHHhc-C------CCCEEEEECCccchh
Confidence 0 00124567777777776 3 235899999999999
Q ss_pred ChHHHHHHHHHhhCCCCCCcceEEEcCCCCCCccceEeceeeec
Q 007563 511 GLIPAVEERVLHAIPSNEAIDMVEVLQSRTNPTYVSWKGGAVLG 554 (598)
Q Consensus 511 G~~~rL~~eL~~~~p~~~~i~~V~v~~~~~dp~~~aWkGgSIla 554 (598)
||.++|++++.. + |.+ +.+|.+++|+||+++|
T Consensus 241 ~l~~~l~~~l~~--~-------v~~---~~~p~~a~a~Gaal~a 272 (272)
T 3h1q_A 241 GFSEEFSRFLGK--E-------VQV---PIHPLLVTPLGIALFG 272 (272)
T ss_dssp THHHHHHHHHSS--C-------CBC---CSSGGGHHHHHHHTTC
T ss_pred hHHHHHHHHhCC--C-------ccc---cCChHHHHHHHHHhcC
Confidence 999999999842 1 121 3589999999998875
No 10
>2v7y_A Chaperone protein DNAK; HSP70, heat shock protein, ATPase, domain rearrangement; HET: ADP; 2.37A {Geobacillus kaustophilus HTA426}
Probab=99.54 E-value=7.1e-15 Score=162.64 Aligned_cols=226 Identities=18% Similarity=0.187 Sum_probs=139.6
Q ss_pred eEEecCCCCCcHHHHHHHHHHHHhcCCCeEeeehhhHHHHhhcCCc-----eEEEEEeCCCcEEEEEee--CCee-eccC
Q 007563 239 AILVLPESFDNREIKEMLSIVLRDLRFASAVVHQEGLAAVFGNGLS-----TACVVNMGAQVTSVICVE--DGVA-LPNT 310 (598)
Q Consensus 239 ~VLvip~~~~~~~vr~l~ellfe~~~f~~v~~~qesv~a~fgaG~~-----sa~VVDiGa~~TsV~pV~--dG~~-l~~s 310 (598)
+|+-+|..|+..+.+.+.+ +++..|++.+.++.|+.||++++|.. +.+|||+|+++|.|+.+. +|.. +..+
T Consensus 112 ~VitvPa~~~~~qr~a~~~-a~~~AGl~~~~li~Ep~AAAlay~~~~~~~~~vlV~D~GgGT~Dvsv~~~~~g~~~v~a~ 190 (509)
T 2v7y_A 112 AVITVPAYFNDAQRQATKD-AGRIAGLEVERIINEPTAAALAYGLDKEEDQTILVYDLGGGTFDVSILELGDGVFEVKAT 190 (509)
T ss_dssp EEEEECTTCCHHHHHHHHH-HHHHTTCEEEEEEEHHHHHHHHTTGGGSCSEEEEEEEECSSCEEEEEEEEETTEEEEEEE
T ss_pred EEEEECCCCCHHHHHHHHH-HHHHcCCCeEEEecCHHHHHHHHhhccCCCCEEEEEECCCCeEEEEEEEEcCCeEEEEEe
Confidence 4666677677665444555 56899999999999999999999874 789999999999999876 5743 3333
Q ss_pred cEEeccccccChHHHHHHHHHHHHhcCCCCCcccccccc-----hhhHHHHHHHHHHceeccCCccccccccccccCCCC
Q 007563 311 EKTLPFGGEVQILDISRCLLWTQRHHQTWPQIRTDILTK-----AMDLLMLNRIKESYCEIKEGEIDAVAVVHSYEDGMP 385 (598)
Q Consensus 311 ~~~l~~GG~~~~~dit~~l~~lL~~~~~~p~~~~~~l~~-----~~d~~l~e~lKe~~c~v~~~~~~~~~~~~~~~~~~p 385 (598)
....++||+ ++|+.|.+++...-.- .+ ..++.. ..-...+|++|+.+|......+... ..+. .+
T Consensus 191 ~g~~~lGG~----d~d~~l~~~l~~~~~~-~~-~~~~~~~~~~~~~l~~~aE~~K~~ls~~~~~~i~l~---~~~~--~~ 259 (509)
T 2v7y_A 191 AGDNHLGGD----DFDQVIIDYLVNQFKQ-EH-GIDLSKDKMALQRLKDAAEKAKKELSGVTQTQISLP---FISA--NE 259 (509)
T ss_dssp EEETTCSHH----HHHHHHHHHHHHHHHH-HH-SCCGGGCHHHHHHHHHHHHHHHHHTTTCSEEEEEEE---EEEE--ET
T ss_pred cCCCCcCHH----HHHHHHHHHHHHHHHH-Hh-CCCcccCHHHHHHHHHHHHHHHHhcCCCCcEEEEEe---cccc--CC
Confidence 445789999 9999998766442000 00 011211 0124678899999875432211100 0000 00
Q ss_pred CCCcceeeeeccCCCCCCCCCcccCCCCCCCCCCCCCCCcccccCCCccccCCCCCCCCCCCCCCCCCCCCCCCCCCccC
Q 007563 386 PGSHKTRLIALNVPPMGLFYPKLLVPDVYPPPPRSWFNDYEDMLEDTWHTDFPRRSDISDNFYPGINVGLPMWESYPVLT 465 (598)
Q Consensus 386 ~~~~k~~~~~~~~aP~~lF~P~~~~~~~~~~p~~~~~~d~~d~~~d~~~~~~~er~~~~E~lfp~~~~~~~~~~~~~~~~ 465 (598)
.+. ..+. +.++ |... |.++..
T Consensus 260 ~G~--~~~~----------------------------------------~~it-r~~f-e~l~~~--------------- 280 (509)
T 2v7y_A 260 NGP--LHLE----------------------------------------MTLT-RAKF-EELSAH--------------- 280 (509)
T ss_dssp TEE--EEEE----------------------------------------EEEE-HHHH-HHHTHH---------------
T ss_pred CCC--eeEE----------------------------------------EEEE-HHHH-HHHHHH---------------
Confidence 000 0000 0000 0000 001100
Q ss_pred CCCCcccCCCHHHHHHHHHhcCCChhhHHHhhcCeEEecCCCCCCChHHHHHHHHHhhCCCCCCcceEEEcCCCCCCccc
Q 007563 466 TKPKKEEKIGLAEAVTSSILSTGRIDLQRKLFCSIQLIGGVALTGGLIPAVEERVLHAIPSNEAIDMVEVLQSRTNPTYV 545 (598)
Q Consensus 466 ~~~~~~~~~~L~~aI~~sI~~~~~~d~r~~L~~nIvLvGG~S~ipG~~~rL~~eL~~~~p~~~~i~~V~v~~~~~dp~~~ 545 (598)
-...+.+.|.+++..+ . +.....++|+|+||+|++||+.++|++.+.. + + . ...+|..+
T Consensus 281 ------~~~~i~~~i~~~L~~a-~--~~~~~i~~VvLvGG~s~~p~v~~~l~~~f~~--~----~---~---~~~~p~~a 339 (509)
T 2v7y_A 281 ------LVERTMGPVRQALQDA-G--LTPADIDKVILVGGSTRIPAVQEAIKRELGK--E----P---H---KGVNPDEV 339 (509)
T ss_dssp ------HHHTTHHHHHHHHHHH-T--CCGGGCSEEEEESGGGGCHHHHHHHHHHHSS--C----C---B---CCSCTTTH
T ss_pred ------HHHHHHHHHHHHHHHc-C--CChhHCcEEEEECCcccChHHHHHHHHHhCC--C----c---C---cCCCchhh
Confidence 0124567777888776 3 3445678999999999999999999998842 1 1 1 23578899
Q ss_pred eEeceeeeccc
Q 007563 546 SWKGGAVLGIL 556 (598)
Q Consensus 546 aWkGgSIla~L 556 (598)
+|.||+++|..
T Consensus 340 Va~Gaa~~a~~ 350 (509)
T 2v7y_A 340 VAIGAAIQGGV 350 (509)
T ss_dssp HHHHHHHHHHH
T ss_pred hHhhHHHHHHH
Confidence 99999999864
No 11
>3qfu_A 78 kDa glucose-regulated protein homolog; HSP70, KAR2, BIP, chaperone; HET: ADP; 1.80A {Saccharomyces cerevisiae} PDB: 3qfp_A 3qml_A 3ldo_A* 3ldl_A 3ldn_A* 3ldp_A*
Probab=99.44 E-value=7.1e-14 Score=148.87 Aligned_cols=91 Identities=20% Similarity=0.229 Sum_probs=68.9
Q ss_pred eEEecCCCCCcHHHHHHHHHHHHhcCCCeEeeehhhHHHHhhcCCce------EEEEEeCCCcEEEEEee--CCeeec-c
Q 007563 239 AILVLPESFDNREIKEMLSIVLRDLRFASAVVHQEGLAAVFGNGLST------ACVVNMGAQVTSVICVE--DGVALP-N 309 (598)
Q Consensus 239 ~VLvip~~~~~~~vr~l~ellfe~~~f~~v~~~qesv~a~fgaG~~s------a~VVDiGa~~TsV~pV~--dG~~l~-~ 309 (598)
+|+-+|..|+..+. +.+.-+++..|++.+.++.|+.||++++|... .+|||+|+++|.|+.+. +|..-. .
T Consensus 156 ~vitvP~~~~~~~r-~~~~~a~~~aGl~~~~li~Ep~Aaa~~~~~~~~~~~~~vlV~D~Gggt~dvsv~~~~~~~~~~~~ 234 (394)
T 3qfu_A 156 AVVTVPAYFNDAQR-QATKDAGTIAGLNVLRIVNEPTAAAIAYGLDKSDKEHQIIVYDLGGGTFDVSLLSIENGVFEVQA 234 (394)
T ss_dssp EEEEECTTCCHHHH-HHHHHHHHHTTCEEEEEEEHHHHHHHHTTTTSCSSCEEEEEEEECSSCEEEEEEEEETTEEEEEE
T ss_pred EEEEECCCCCHHHH-HHHHHHHHHcCCceEEEecCHHHHHHHHhhccCCCCceEEEEEcCCCceeEEEEEEeCCEEEEEE
Confidence 46667777776664 44445558999999999999999999998653 49999999999887774 554322 2
Q ss_pred CcEEeccccccChHHHHHHHHHHHH
Q 007563 310 TEKTLPFGGEVQILDISRCLLWTQR 334 (598)
Q Consensus 310 s~~~l~~GG~~~~~dit~~l~~lL~ 334 (598)
+....++||+ ++|+.|.+.+.
T Consensus 235 ~~~~~~lGG~----~~d~~l~~~l~ 255 (394)
T 3qfu_A 235 TSGDTHLGGE----DFDYKIVRQLI 255 (394)
T ss_dssp EEEETTCSHH----HHHHHHHHHHH
T ss_pred EcCCCCCChH----HHHHHHHHHHH
Confidence 2334799999 99999987663
No 12
>1dkg_D Molecular chaperone DNAK; HSP70, GRPE, nucleotide exchange factor, coiled-coil, complex (HSP24/HSP70); 2.80A {Escherichia coli} SCOP: c.55.1.1 c.55.1.1
Probab=99.42 E-value=7e-14 Score=148.63 Aligned_cols=224 Identities=16% Similarity=0.143 Sum_probs=140.0
Q ss_pred eEEecCCCCCcHHHHHHHHHHHHhcCCCeEeeehhhHHHHhhcCCc------eEEEEEeCCCcEEEEEeeCC------ee
Q 007563 239 AILVLPESFDNREIKEMLSIVLRDLRFASAVVHQEGLAAVFGNGLS------TACVVNMGAQVTSVICVEDG------VA 306 (598)
Q Consensus 239 ~VLvip~~~~~~~vr~l~ellfe~~~f~~v~~~qesv~a~fgaG~~------sa~VVDiGa~~TsV~pV~dG------~~ 306 (598)
.|+-+|..|+..+.+.+.+ +++..|++.+.++.|++||++++|.. +.+|||+|+++|.|+.+..| ..
T Consensus 138 ~vitvP~~~~~~~r~~~~~-a~~~aGl~~~~li~Ep~Aaa~~~~~~~~~~~~~~lVvD~Gggttdvsv~~~~~~~~~~~~ 216 (383)
T 1dkg_D 138 AVITVPAYFNDAQRQATKD-AGRIAGLEVKRIINEPTAAALAYGLDKGTGNRTIAVYDLGGGTFDISIIEIDEVDGEKTF 216 (383)
T ss_dssp EEECBCTTCCHHHHHHHHH-HHHHTTCEESCCCBHHHHHHHHHTCCC-CCEEEEEEEEECSSCEEEEEEEEEC----CCC
T ss_pred EEEEECCCCCHHHHHHHHH-HHHHcCCceEEEeccHHHHHHHHHhccCCCCcEEEEEEcCCCeEEEEEEEEEecCCCCeE
Confidence 4666666677665434555 57899999999999999999988764 68999999999999988643 32
Q ss_pred e-ccCcEEeccccccChHHHHHHHHHHHHhcCCCCCcccccccc-----hhhHHHHHHHHHHceeccCCccccccccccc
Q 007563 307 L-PNTEKTLPFGGEVQILDISRCLLWTQRHHQTWPQIRTDILTK-----AMDLLMLNRIKESYCEIKEGEIDAVAVVHSY 380 (598)
Q Consensus 307 l-~~s~~~l~~GG~~~~~dit~~l~~lL~~~~~~p~~~~~~l~~-----~~d~~l~e~lKe~~c~v~~~~~~~~~~~~~~ 380 (598)
. ..+....++||+ ++|+.|.+++..+-. .-...++.. ..-+..+|++|+.+|......+... ..+
T Consensus 217 ~v~~~~~~~~lGG~----~id~~l~~~l~~~~~--~~~~~~~~~~~~~~~~l~~~ae~~K~~ls~~~~~~i~i~---~~~ 287 (383)
T 1dkg_D 217 EVLATNGDTHLGGE----DFDSRLINYLVEEFK--KDQGIDLRNDPLAMQRLKEAAEKAKIELSSAQQTDVNLP---YIT 287 (383)
T ss_dssp EEEEEEEESSCSHH----HHHHHHHHHHHHHHH--HHHCCCSTTCHHHHHHHHHHHHHHHHHTTSSSEEEEEEE---EEE
T ss_pred EEEEEeCCCCCCHH----HHHHHHHHHHHHHHH--HHhCCCcccCHHHHHHHHHHHHHHHHHhCCCCceEEEEe---ccc
Confidence 1 112345789999 999999887654300 000011110 1124678999999886543211100 000
Q ss_pred cCCCCCCCc--ceeeeeccCCCCCCCCCcccCCCCCCCCCCCCCCCcccccCCCccccCCCCCCCCCCCCCCCCCCCCCC
Q 007563 381 EDGMPPGSH--KTRLIALNVPPMGLFYPKLLVPDVYPPPPRSWFNDYEDMLEDTWHTDFPRRSDISDNFYPGINVGLPMW 458 (598)
Q Consensus 381 ~~~~p~~~~--k~~~~~~~~aP~~lF~P~~~~~~~~~~p~~~~~~d~~d~~~d~~~~~~~er~~~~E~lfp~~~~~~~~~ 458 (598)
. .+++.. ...+. |... |.++.
T Consensus 288 ~--~~~G~~~~~~~it---------------------------------------------~~~~-~~~~~--------- 310 (383)
T 1dkg_D 288 A--DATGPKHMNIKVT---------------------------------------------RAKL-ESLVE--------- 310 (383)
T ss_dssp E--ETTEEEEEEEEEE---------------------------------------------HHHH-HHHSH---------
T ss_pred c--cCCCCeeEEEEEe---------------------------------------------HHHH-HHHHH---------
Confidence 0 000000 00000 0000 00110
Q ss_pred CCCCccCCCCCcccCCCHHHHHHHHHhcCCChhhHHHhhcCeEEecCCCCCCChHHHHHHHHHhhCCCCCCcceEEEcCC
Q 007563 459 ESYPVLTTKPKKEEKIGLAEAVTSSILSTGRIDLQRKLFCSIQLIGGVALTGGLIPAVEERVLHAIPSNEAIDMVEVLQS 538 (598)
Q Consensus 459 ~~~~~~~~~~~~~~~~~L~~aI~~sI~~~~~~d~r~~L~~nIvLvGG~S~ipG~~~rL~~eL~~~~p~~~~i~~V~v~~~ 538 (598)
.....+.+.|.++|..+ . +.....++|+|+||+|++||+.++|++++.. + +. .
T Consensus 311 ------------~~~~~i~~~i~~~l~~~-~--~~~~~i~~IvL~GG~s~~p~l~~~l~~~~~~--~-------v~---~ 363 (383)
T 1dkg_D 311 ------------DLVNRSIELLKVALQDA-G--LSVSDIDDVILVGGQTRMPMVQKKVAEFFGK--E-------PR---K 363 (383)
T ss_dssp ------------HHHHHHHHHHHHHHHTT-T--CCTTTCCEEEEESGGGGSHHHHHHHHHHHSS--C-------CB---C
T ss_pred ------------HHHHHHHHHHHHHHHHc-C--CCHhhCCEEEEecCccccHHHHHHHHHHhCC--C-------CC---C
Confidence 01124677888888887 3 3445668999999999999999999999852 1 11 2
Q ss_pred CCCCccceEeceeeeccc
Q 007563 539 RTNPTYVSWKGGAVLGIL 556 (598)
Q Consensus 539 ~~dp~~~aWkGgSIla~L 556 (598)
..+|..++|+||+++|.+
T Consensus 364 ~~~p~~ava~Gaa~~a~~ 381 (383)
T 1dkg_D 364 DVNPDEAVAIGAAVQGGV 381 (383)
T ss_dssp SSCTTTHHHHHHHHHTTT
T ss_pred CcChHHHHHHHHHHHHHh
Confidence 358899999999999875
No 13
>3i33_A Heat shock-related 70 kDa protein 2; protein-ADP complex, ATP-binding, chaperone, nucleotide-BIND phosphoprotein, stress response; HET: ADP; 1.30A {Homo sapiens} PDB: 4fsv_A* 1hx1_A 3jxu_A* 2qwl_A* 2qw9_A* 2qwm_A* 1hpm_A* 1ngi_A* 1ngj_A* 3hsc_A* 1ngb_A* 3ldq_A* 3fzf_A* 3fzk_A* 3fzl_A* 3fzm_A* 3fzh_A* 3m3z_A* 1ngh_A* 1ngd_A* ...
Probab=99.39 E-value=2.4e-13 Score=145.49 Aligned_cols=90 Identities=19% Similarity=0.286 Sum_probs=69.8
Q ss_pred eEEecCCCCCcHHHHHHHHHHHHhcCCCeEeeehhhHHHHhhcCCce---------EEEEEeCCCcEEEEEee--CCee-
Q 007563 239 AILVLPESFDNREIKEMLSIVLRDLRFASAVVHQEGLAAVFGNGLST---------ACVVNMGAQVTSVICVE--DGVA- 306 (598)
Q Consensus 239 ~VLvip~~~~~~~vr~l~ellfe~~~f~~v~~~qesv~a~fgaG~~s---------a~VVDiGa~~TsV~pV~--dG~~- 306 (598)
+|+-+|..|+..+. +.+.-+++..|++.+.++.|+.||++++|... .+|||+|+++|.|+.+. +|..
T Consensus 161 ~vitvPa~~~~~~r-~~~~~a~~~AGl~~~~li~Ep~AAa~~~~~~~~~~~~~~~~vlV~D~GgGT~dvsv~~~~~~~~~ 239 (404)
T 3i33_A 161 AVITVPAYFNDSQR-QATKDAGTITGLNVLRIINEPTAAAIAYGLDKKGCAGGEKNVLIFDLGGGTFDVSILTIEDGIFE 239 (404)
T ss_dssp EEEEECTTCCHHHH-HHHHHHHHHHTCEEEEEEEHHHHHHHHTTTTSSCSSSSCCEEEEEEECSSCEEEEEEEEETTEEE
T ss_pred EEEEECCCCCHHHH-HHHHHHHHHcCCCeEEEeccHHHHHHHHHhhcccccCCCceEEEEECCCCcEEEEEEEEeCCeEE
Confidence 46667777877664 44455688999999999999999999987643 49999999999998774 5543
Q ss_pred eccCcEEeccccccChHHHHHHHHHHH
Q 007563 307 LPNTEKTLPFGGEVQILDISRCLLWTQ 333 (598)
Q Consensus 307 l~~s~~~l~~GG~~~~~dit~~l~~lL 333 (598)
+..+....++||+ ++++.|.+.+
T Consensus 240 v~~~~~~~~lGG~----~~d~~l~~~l 262 (404)
T 3i33_A 240 VKSTAGDTHLGGE----DFDNRMVSHL 262 (404)
T ss_dssp EEEEEEETTCSHH----HHHHHHHHHH
T ss_pred EEEEeCCCCCCHH----HHHHHHHHHH
Confidence 2223345789999 9999998766
No 14
>1yuw_A Heat shock cognate 71 kDa protein; chaperone; 2.60A {Bos taurus} SCOP: b.130.1.1 c.55.1.1 c.55.1.1 PDB: 3c7n_B* 2v7z_A*
Probab=99.03 E-value=1.4e-10 Score=129.46 Aligned_cols=91 Identities=18% Similarity=0.265 Sum_probs=71.9
Q ss_pred eEEecCCCCCcHHHHHHHHHHHHhcCCCeEeeehhhHHHHhhcCC-------ceEEEEEeCCCcEEEEEee--CCee-ec
Q 007563 239 AILVLPESFDNREIKEMLSIVLRDLRFASAVVHQEGLAAVFGNGL-------STACVVNMGAQVTSVICVE--DGVA-LP 308 (598)
Q Consensus 239 ~VLvip~~~~~~~vr~l~ellfe~~~f~~v~~~qesv~a~fgaG~-------~sa~VVDiGa~~TsV~pV~--dG~~-l~ 308 (598)
+|+-+|..|+..+ |+.+.-+++..|++.+.++.|+.||++++|. .+.+|+|+|+++|.|+.+. +|.. +.
T Consensus 142 ~VitVPa~f~~~q-r~a~~~A~~~AGl~~~~li~EP~AAAlay~~~~~~~~~~~vlV~D~GgGT~Dvsv~~~~~g~~~v~ 220 (554)
T 1yuw_A 142 AVVTVPAYFNDSQ-RQATKDAGTIAGLNVLRIINEPTAAAIAYGLDKKVGAERNVLIFDLGGGTFDVSILTIAAGIFEVK 220 (554)
T ss_dssp EEEEECTTCCHHH-HHHHHHHHHTTTCEEEEEEEHHHHHHHHTTCSTTCSSCEEEEEEEECSSCEEEEEEEEETTEEEEE
T ss_pred EEEEECCCCCHHH-HHHHHHHHHHcCCCeEEEeCcHHHHHHHHHhhccCCCCcEEEEEEcCCCeEEEEEEEEcCCcEEEE
Confidence 5677777788766 4444457789999999999999999998875 3589999999999999886 7854 23
Q ss_pred cCcEEeccccccChHHHHHHHHHHHH
Q 007563 309 NTEKTLPFGGEVQILDISRCLLWTQR 334 (598)
Q Consensus 309 ~s~~~l~~GG~~~~~dit~~l~~lL~ 334 (598)
.+.....+||+ ++++.|.+.+.
T Consensus 221 a~~g~~~lGG~----d~d~~l~~~l~ 242 (554)
T 1yuw_A 221 STAGDTHLGGE----DFDNRMVNHFI 242 (554)
T ss_dssp EEEEETTCSHH----HHHHHHHHHHH
T ss_pred EEeCCCCCCHH----HHHHHHHHHHH
Confidence 34445789999 99999887653
No 15
>2kho_A Heat shock protein 70; molecular chaperone, HSP70, peptide binding, protein folding, acetylation, ATP-binding, cell inner membrane; NMR {Escherichia coli}
Probab=98.95 E-value=5.7e-10 Score=125.81 Aligned_cols=139 Identities=17% Similarity=0.149 Sum_probs=89.8
Q ss_pred HHHHHHHHhhhhcCCCCCCCCccceEEecCCCCCcHHHHHHHHHHHHhcCCCeEeeehhhHHHHhhcCCc------eEEE
Q 007563 215 LYAIWDWILTEKLHIPRSERNLYSAILVLPESFDNREIKEMLSIVLRDLRFASAVVHQEGLAAVFGNGLS------TACV 288 (598)
Q Consensus 215 le~i~~~~l~~~L~i~~~~~~~y~~VLvip~~~~~~~vr~l~ellfe~~~f~~v~~~qesv~a~fgaG~~------sa~V 288 (598)
|..+++.+- ..|+.+.. .+|+-+|..|+..+ |+.+.-+.+..|+..+.++.|+.||++++|.. ..+|
T Consensus 120 L~~l~~~ae-~~l~~~v~-----~~VitVPa~f~d~q-r~a~~~A~~~AGl~v~~li~EP~AAAlay~l~~~~~~~~vlV 192 (605)
T 2kho_A 120 LKKMKKTAE-DYLGEPVT-----EAVITVPAYFNDAQ-RQATKDAGRIAGLEVKRIINEPTAAALAYGLDKGTGNRTIAV 192 (605)
T ss_dssp HHHHHHHHH-HHHCSCCC-----EEEEEECTTCCHHH-HHHHHHHHHTTTCEEEEEEEHHHHHHHHTTTTSSSSEEEEEE
T ss_pred HHHHHHHHH-HHhCCCCc-----EEEEEECCCCCHHH-HHHHHHHHHHcCCceEEEecCHHHHHHHhhhcccCCCCEEEE
Confidence 344444442 44654322 25777888777665 44555567889999999999999999988754 3799
Q ss_pred EEeCCCcEEEEEee------CCee-eccCcEEeccccccChHHHHHHHHHHHHhcCCCCCcccccccc-h----hhHHHH
Q 007563 289 VNMGAQVTSVICVE------DGVA-LPNTEKTLPFGGEVQILDISRCLLWTQRHHQTWPQIRTDILTK-A----MDLLML 356 (598)
Q Consensus 289 VDiGa~~TsV~pV~------dG~~-l~~s~~~l~~GG~~~~~dit~~l~~lL~~~~~~p~~~~~~l~~-~----~d~~l~ 356 (598)
+|+|+++|.|+.+. +|.. +..+....++||+ ++++.|.+.+...-.- .+ ..++.. . .-+..+
T Consensus 193 ~DlGGGT~Dvsi~~~~~~~~~g~~~v~a~~gd~~lGG~----d~D~~l~~~l~~~~~~-~~-~~~~~~~~~~~~~L~~~a 266 (605)
T 2kho_A 193 YDLGGGTFDISIIEIDEVDGEKTFEVLATNGDTHLGGE----DFDSRLINYLVEEFKK-DQ-GIDLRNDPLAMQRLKEAA 266 (605)
T ss_dssp EEECSSCEEEEEEEEECTTTSCEEEEEEEEEESSCSGG----GTHHHHHHHHHHHHHH-HH-SCCSTTCHHHHHHHHHHH
T ss_pred EECCCCeEEEEEEEEEecCCCCeEEEEEECCCCCccHH----HHHHHHHHHHHHHHHH-Hh-CCCcccCHHHHHHHHHHH
Confidence 99999999999886 4543 2223344689999 9999998765432000 00 011110 0 113568
Q ss_pred HHHHHHceec
Q 007563 357 NRIKESYCEI 366 (598)
Q Consensus 357 e~lKe~~c~v 366 (598)
|++|+.++..
T Consensus 267 E~~K~~ls~~ 276 (605)
T 2kho_A 267 EKAKIELSSA 276 (605)
T ss_dssp HHHHHHTTSS
T ss_pred HHHHHHcCCC
Confidence 8889887654
No 16
>2ych_A Competence protein PILM; cell cycle, type IV pilus actin secretion; HET: ATP; 2.20A {Thermus thermophilus}
Probab=98.90 E-value=9e-09 Score=108.84 Aligned_cols=92 Identities=20% Similarity=0.329 Sum_probs=71.6
Q ss_pred HHHHHHHHhcCCCeEeeehhhHHHHhhcCC------c-eEEEEEeCCCcEEEEEeeCCeeeccCcEEeccccccChHHHH
Q 007563 254 EMLSIVLRDLRFASAVVHQEGLAAVFGNGL------S-TACVVNMGAQVTSVICVEDGVALPNTEKTLPFGGEVQILDIS 326 (598)
Q Consensus 254 ~l~ellfe~~~f~~v~~~qesv~a~fgaG~------~-sa~VVDiGa~~TsV~pV~dG~~l~~s~~~l~~GG~~~~~dit 326 (598)
+-+.-+++..|+.-..+..+++|++.++|. . ..+|||+|+++|.|+.+.+|.++. ...+++||+ ++|
T Consensus 154 ~~~~~~~~~aGl~~~~i~~ep~Aaa~~~~~~~~~~~~~~~~vvDiGggttdi~i~~~g~~~~--~~~~~~GG~----~i~ 227 (377)
T 2ych_A 154 AGVLEALRGAGLVPVVLDVKPFAGLYPLEARLAEEPDRVFLVLDIGAESTSLVLLRGDKPLA--VRVLTLSGK----DFT 227 (377)
T ss_dssp HHHHHHHHHTTCEEEEEEEHHHHTTGGGHHHHHTSTTCEEEEEEECSSCEEEEEEETTEEEE--EEEESCSHH----HHH
T ss_pred HHHHHHHHHCCCceEEEecchHHHHHHHHhhcccccCCeEEEEEECCCcEEEEEEECCEEEE--EEeeechHH----HHH
Confidence 333446688999999999999999988752 2 469999999999999999998774 357899999 999
Q ss_pred HHHHHHHHhcCCCCCcccccccchhhHHHHHHHHHHceecc
Q 007563 327 RCLLWTQRHHQTWPQIRTDILTKAMDLLMLNRIKESYCEIK 367 (598)
Q Consensus 327 ~~l~~lL~~~~~~p~~~~~~l~~~~d~~l~e~lKe~~c~v~ 367 (598)
+.+.+.+ + .+...+|++|+++++..
T Consensus 228 ~~i~~~~---~-------------~~~~~aE~~K~~~~~~~ 252 (377)
T 2ych_A 228 EAIARSF---N-------------LDLLAAEEVKRTYGMAT 252 (377)
T ss_dssp HHHHHHT---T-------------CCHHHHHHHHHHTC---
T ss_pred HHHHHHh---C-------------CCHHHHHHHHhhccccc
Confidence 9987621 1 13567999999987654
No 17
>3d2f_A Heat shock protein homolog SSE1; nucleotide exchange factor, protein folding, ATP-binding, Ca binding, chaperone, nucleotide-binding, phosphoprotein; HET: ATP; 2.30A {Saccharomyces cerevisiae} PDB: 3d2e_A* 3c7n_A* 2qxl_A*
Probab=98.87 E-value=2.9e-09 Score=121.30 Aligned_cols=91 Identities=14% Similarity=0.193 Sum_probs=70.8
Q ss_pred eEEecCCCCCcHHHHHHHHHHHHhcCCCeEeeehhhHHHHhhcCC------------ceEEEEEeCCCcEEEEEee--CC
Q 007563 239 AILVLPESFDNREIKEMLSIVLRDLRFASAVVHQEGLAAVFGNGL------------STACVVNMGAQVTSVICVE--DG 304 (598)
Q Consensus 239 ~VLvip~~~~~~~vr~l~ellfe~~~f~~v~~~qesv~a~fgaG~------------~sa~VVDiGa~~TsV~pV~--dG 304 (598)
+|+-+|..|+..+ |+.+.-+.+..|+..+.++.++.||++++|. .+.+|+|+|+++|.|+.+. +|
T Consensus 141 ~VITVPa~f~~~q-R~a~~~Aa~~AGl~~~~li~EP~AAAlaygl~~~~~~~~~~~~~~vlV~DlGGGT~Dvsv~~~~~g 219 (675)
T 3d2f_A 141 VCIAVPPWYTEEQ-RYNIADAARIAGLNPVRIVNDVTAAGVSYGIFKTDLPEGEEKPRIVAFVDIGHSSYTCSIMAFKKG 219 (675)
T ss_dssp EEEEECTTCCHHH-HHHHHHHHHHTTCEEEEEEEHHHHHHHHHHHHCSCCCCSSSCCEEEEEEEECSSCEEEEEEEEETT
T ss_pred EEEEECCCCCHHH-HHHHHHHHHHcCCceEEEEcchHHHHHHHhhhccccccccCCCcEEEEEEcCCCcEEEEEEEecCC
Confidence 5777777788766 4444456688999999999999999988754 2489999999999999885 77
Q ss_pred ee-eccCcEEeccccccChHHHHHHHHHHHH
Q 007563 305 VA-LPNTEKTLPFGGEVQILDISRCLLWTQR 334 (598)
Q Consensus 305 ~~-l~~s~~~l~~GG~~~~~dit~~l~~lL~ 334 (598)
.. +..+.....+||+ ++++.|.+.+.
T Consensus 220 ~~~V~a~~gd~~lGG~----d~D~~l~~~l~ 246 (675)
T 3d2f_A 220 QLKVLGTACDKHFGGR----DFDLAITEHFA 246 (675)
T ss_dssp EEEEEEEEEETTCSHH----HHHHHHHHHHH
T ss_pred eEEEEEEcCCCCccHH----HHHHHHHHHHH
Confidence 54 3333345789999 99999987664
No 18
>4gni_A Putative heat shock protein; HSP70-type ATPase, ATP binding protein, magnesium binding, C translational chaperone; HET: ATP; 1.80A {Chaetomium thermophilum var}
Probab=98.85 E-value=1.8e-09 Score=115.70 Aligned_cols=110 Identities=17% Similarity=0.206 Sum_probs=78.7
Q ss_pred HHHHHHHHhhhhcCCCCCCCCccceEEecCCCCCcHHHHHHHHHHHHhcCCCeEeeehhhHHHHhhcCCc--------eE
Q 007563 215 LYAIWDWILTEKLHIPRSERNLYSAILVLPESFDNREIKEMLSIVLRDLRFASAVVHQEGLAAVFGNGLS--------TA 286 (598)
Q Consensus 215 le~i~~~~l~~~L~i~~~~~~~y~~VLvip~~~~~~~vr~l~ellfe~~~f~~v~~~qesv~a~fgaG~~--------sa 286 (598)
|..+++++- ..++.+.. .+|+-+|..|+..+. +.+.-+.+..|+..+.++.|+.||+++++.. ..
T Consensus 135 L~~l~~~a~-~~~~~~~~-----~~vitvPa~~~~~~r-~~~~~a~~~AGl~~~~li~Ep~AAa~~~~~~~~~~~~~~~v 207 (409)
T 4gni_A 135 LRRLVGAAS-EYLGKKVT-----SAVITIPTNFTEKQK-AALIAAAAAADLEVLQLISEPAAAVLAYDARPEATISDKII 207 (409)
T ss_dssp HHHHHHHHH-HHHTSCCC-----EEEEEECTTCCHHHH-HHHHHHHHHTTCEEEEEEEHHHHHHHHTTC------CCEEE
T ss_pred HHHHHHHHH-HHhCCCCC-----eEEEEECCCCCHHHH-HHHHHHHHHcCCCeEEEEcCHHHHHHHHhcccccCCCCCEE
Confidence 455555553 44553322 257778888987663 4555567888999999999999999999875 48
Q ss_pred EEEEeCCCcEEEEEe--eCCeee-ccCcEEeccccccChHHHHHHHHHHHHh
Q 007563 287 CVVNMGAQVTSVICV--EDGVAL-PNTEKTLPFGGEVQILDISRCLLWTQRH 335 (598)
Q Consensus 287 ~VVDiGa~~TsV~pV--~dG~~l-~~s~~~l~~GG~~~~~dit~~l~~lL~~ 335 (598)
+|||+|+++|.|+-+ .+|..- ..+....++||+ ++|+.|.+.+..
T Consensus 208 lv~D~GgGT~dvsv~~~~~~~~~v~~~~~~~~lGG~----~~d~~i~~~l~~ 255 (409)
T 4gni_A 208 VVADLGGSRSDVTVLASRSGMYTILATVHDYEYHGI----ALDKVLIDHFSK 255 (409)
T ss_dssp EEEEECSSCEEEEEEEEETTEEEEEEEEEESSSSHH----HHHHHHHHHHHH
T ss_pred EEEECCCCceEEEEEEEeCCeEEEEEecCCCCcCHH----HHHHHHHHHHHH
Confidence 999999999999875 444321 112234789999 999999876643
No 19
>4a2a_A Cell division protein FTSA, putative; cell cycle, actin, divisome; HET: ATP; 1.80A {Thermotoga maritima} PDB: 1e4g_T* 1e4f_T* 4a2b_A*
Probab=98.61 E-value=1.4e-07 Score=101.50 Aligned_cols=90 Identities=18% Similarity=0.180 Sum_probs=73.6
Q ss_pred HHHHHHHHhcCCCeEeeehhhHHHHhhcCCc-----eEEEEEeCCCcEEEEEeeCCeeeccCcEEeccccccChHHHHHH
Q 007563 254 EMLSIVLRDLRFASAVVHQEGLAAVFGNGLS-----TACVVNMGAQVTSVICVEDGVALPNTEKTLPFGGEVQILDISRC 328 (598)
Q Consensus 254 ~l~ellfe~~~f~~v~~~qesv~a~fgaG~~-----sa~VVDiGa~~TsV~pV~dG~~l~~s~~~l~~GG~~~~~dit~~ 328 (598)
+-..-+++..|+.-..++.+++||+++++.. ..+|||+|+++|.|+-+.+|.+.. ...+++||+ ++|+.
T Consensus 171 ~n~~~~~~~AGL~v~~lv~ep~Aaa~a~l~~~~~~~gv~vvDiGggttdisi~~~g~~~~--~~~i~~GG~----~it~d 244 (419)
T 4a2a_A 171 EMFYNFLQDTVKSPFQLKSSLVSTAEGVLTTPEKDRGVVVVNLGYNFTGLIAYKNGVPIK--ISYVPVGMK----HVIKD 244 (419)
T ss_dssp HHHHHHHHTTSCSCEEEEEHHHHHHHHHCCHHHHHHCEEEEEECSSSEEEEEEETTEEEE--EEEESCCHH----HHHHH
T ss_pred HHHHHHHHHcCCcEEEEEEHHHHHHHHhhccccccCCEEEEEECCCcEEEEEEECCEEEE--EEecccHHH----HHHHH
Confidence 3334456889999999999999999998753 589999999999999999998874 356899999 99999
Q ss_pred HHHHHHhcCCCCCcccccccchhhHHHHHHHHHHcee
Q 007563 329 LLWTQRHHQTWPQIRTDILTKAMDLLMLNRIKESYCE 365 (598)
Q Consensus 329 l~~lL~~~~~~p~~~~~~l~~~~d~~l~e~lKe~~c~ 365 (598)
+...+. .+...+|++|.++..
T Consensus 245 Ia~~l~----------------~~~~~AE~iK~~~g~ 265 (419)
T 4a2a_A 245 VSAVLD----------------TSFEESERLIITHGN 265 (419)
T ss_dssp HHHHHT----------------CCHHHHHHHHHHHCC
T ss_pred HHHHHC----------------CCHHHHHHHHHHhcc
Confidence 886542 235679999998754
No 20
>4b9q_A Chaperone protein DNAK; HET: ATP; 2.40A {Escherichia coli} PDB: 2kho_A 1dkg_D
Probab=98.56 E-value=1.2e-07 Score=106.82 Aligned_cols=109 Identities=21% Similarity=0.237 Sum_probs=77.2
Q ss_pred HHHHHHHHhhhhcCCCCCCCCccceEEecCCCCCcHHHHHHHHHHHHhcCCCeEeeehhhHHHHhhcCCc------eEEE
Q 007563 215 LYAIWDWILTEKLHIPRSERNLYSAILVLPESFDNREIKEMLSIVLRDLRFASAVVHQEGLAAVFGNGLS------TACV 288 (598)
Q Consensus 215 le~i~~~~l~~~L~i~~~~~~~y~~VLvip~~~~~~~vr~l~ellfe~~~f~~v~~~qesv~a~fgaG~~------sa~V 288 (598)
|..+.+.+- ..|+.+..+ +|+-+|..|+..+ |+.+.-+.+..|+..+.++.|+.||++++|.. +-+|
T Consensus 120 L~~lk~~ae-~~lg~~v~~-----~VITVPa~f~~~q-r~a~~~Aa~~AGl~v~~li~EP~AAAlaygl~~~~~~~~vlV 192 (605)
T 4b9q_A 120 LKKMKKTAE-DYLGEPVTE-----AVITVPAYFNDAQ-RQATKDAGRIAGLEVKRIINEPTAAALAYGLDKGTGNRTIAV 192 (605)
T ss_dssp HHHHHHHHH-HHHTSCCCE-----EEEEECTTCCHHH-HHHHHHHHHHTTCEEEEEEEHHHHHHHHHHTTSCCSSEEEEE
T ss_pred HHHHHHHHH-HHhCCCCCe-----EEEEECCCCCHHH-HHHHHHHHHHcCCceEEEeCcHHHHHHHhhhhccCCCCEEEE
Confidence 344444442 456654332 5777777887665 45666677889999999999999999988753 4689
Q ss_pred EEeCCCcEEEEEeeCCe------e-eccCcEEeccccccChHHHHHHHHHHHH
Q 007563 289 VNMGAQVTSVICVEDGV------A-LPNTEKTLPFGGEVQILDISRCLLWTQR 334 (598)
Q Consensus 289 VDiGa~~TsV~pV~dG~------~-l~~s~~~l~~GG~~~~~dit~~l~~lL~ 334 (598)
+|+|++++.|+.+.-+- . +..+.....+||+ ++++.|.+.+.
T Consensus 193 ~DlGGGT~Dvsi~~~~~~~~~~~~evla~~gd~~lGG~----d~D~~l~~~l~ 241 (605)
T 4b9q_A 193 YDLGGGAFDISIIEIDEVDGEKTFEVLATNGDTHLGGE----DFDSRLINYLV 241 (605)
T ss_dssp EEECSSCEEEEEEEEEESSSCEEEEEEEEEEETTCSHH----HHHHHHHHHHH
T ss_pred EECCCCeEEEEEEEEecCCCCceEEEEEecCCCCcChH----HHHHHHHHHHH
Confidence 99999999999885332 1 1112234578999 99999987654
No 21
>2fsj_A Hypothetical protein TA0583; actin homologs, archaea, ATPase, MREB, PARM, structural PROT; 1.90A {Thermoplasma acidophilum} SCOP: c.55.1.12 c.55.1.12 PDB: 2fsk_A 2fsn_A*
Probab=98.34 E-value=6.3e-07 Score=93.98 Aligned_cols=137 Identities=15% Similarity=0.169 Sum_probs=93.6
Q ss_pred CceEEccccccCCCCCCceEecceecCeeeecCCCCccccHHHHHHHHHHHhhhhcC-CCCCCCCccceE--EecCCCCC
Q 007563 172 REFICGEEALRVSPTEPYCIHRPIRRGHLNISQHYPMQQVLEDLYAIWDWILTEKLH-IPRSERNLYSAI--LVLPESFD 248 (598)
Q Consensus 172 ~~~~vGeeAl~~~~~~~~~l~~Pi~~G~~n~~~~~s~~~~~~dle~i~~~~l~~~L~-i~~~~~~~y~~V--Lvip~~~~ 248 (598)
+.|+||++|. +|+..|.+. + +..+.++.+++.+... -.... -+.| +-+|..+.
T Consensus 78 ~~~~vG~~A~-----------~~l~~~~~~---------~-~~~~~ll~~~l~~~~~~~~~~~---~~vvL~i~vP~~~~ 133 (346)
T 2fsj_A 78 GKYASGNNIR-----------VPQGDGRLA---------S-KEAFPLIAAALWESGIHNDGSP---VDLVIGSGTPLGTF 133 (346)
T ss_dssp GGGCCSSCCB-----------CCSSTTCTT---------S-TTTHHHHHHHHHHHCCCC---C---EEEEEEEEECGGGH
T ss_pred cEEEEcccee-----------cccCCCccc---------C-hhHHHHHHHHHHHhhhccCCCc---eEEEEcccCCHHHH
Confidence 5688999988 678888766 4 5567777777754321 11111 2244 44554444
Q ss_pred cHHHHHHHHHHHHh-------------cCCCeEeeehhhHHHHhhc--CC------ceEEEEEeCCCcEEEEEee--CCe
Q 007563 249 NREIKEMLSIVLRD-------------LRFASAVVHQEGLAAVFGN--GL------STACVVNMGAQVTSVICVE--DGV 305 (598)
Q Consensus 249 ~~~vr~l~ellfe~-------------~~f~~v~~~qesv~a~fga--G~------~sa~VVDiGa~~TsV~pV~--dG~ 305 (598)
..+.+.+-+.+... +++..|.++.|+.+|++++ +. .+.+|||||+.+|.|+-+. +|.
T Consensus 134 ~~er~a~~~~~~~~~~~v~~~~G~~~~i~v~~v~li~Ep~AAa~~~l~~~~~~~~~~~vlVvDIGgGTtDv~vi~~~~g~ 213 (346)
T 2fsj_A 134 DLEVKAAKEALENKVLTVTGPEGEVRQFNITRLIMRPQGVGAALYLLNQGIIEQQPGYGVVIDVGSRTTDVLTINLMDME 213 (346)
T ss_dssp HHHHHHHHHHHTTEEEEEECGGGCEEEEEEEEEEEEETTHHHHHHHHHHTSSCCCSSEEEEEEECSSCEEEEEEETTTTE
T ss_pred HHHHHHHHHHHcCCCcEEEeCCCceEEEEEEEEEEEccHHHHHHHhhccccccccCCcEEEEECCCCcEEEEEEEecCCE
Confidence 44433455544332 2357799999999999985 31 3459999999999999998 887
Q ss_pred eeccCcEEeccccccChHHHHHHHHHHHHhc
Q 007563 306 ALPNTEKTLPFGGEVQILDISRCLLWTQRHH 336 (598)
Q Consensus 306 ~l~~s~~~l~~GG~~~~~dit~~l~~lL~~~ 336 (598)
.+..+...+++||+ ++++.+.+.++.+
T Consensus 214 ~v~~~s~~~~lGg~----~i~~~I~~~i~~~ 240 (346)
T 2fsj_A 214 PVVELSFSLQIGVG----DAISALSRKIAKE 240 (346)
T ss_dssp ECGGGCEEESCCHH----HHHHHHHHHHHHH
T ss_pred EEeecCCCcchhHH----HHHHHHHHHHHHH
Confidence 66655678899999 9999998877544
No 22
>1nbw_A Glycerol dehydratase reactivase alpha subunit; molecular chaperone, actin-like ATPase domain, beta/BETA/alpha swiveling domain, hydrolase; 2.40A {Klebsiella pneumoniae} SCOP: c.8.6.1 c.55.1.6 c.55.1.6
Probab=97.46 E-value=0.00059 Score=74.35 Aligned_cols=72 Identities=21% Similarity=0.173 Sum_probs=56.7
Q ss_pred hhhHHHHhhcCC----c-eEEEEEeCCCcEEEEEeeCCeeeccCcEEeccccccChHHHHHHHHHHHHhcCCCCCccccc
Q 007563 272 QEGLAAVFGNGL----S-TACVVNMGAQVTSVICVEDGVALPNTEKTLPFGGEVQILDISRCLLWTQRHHQTWPQIRTDI 346 (598)
Q Consensus 272 qesv~a~fgaG~----~-sa~VVDiGa~~TsV~pV~dG~~l~~s~~~l~~GG~~~~~dit~~l~~lL~~~~~~p~~~~~~ 346 (598)
-+++||.+|+=. . -.|+||+|+++|+++-+.+|..+. ...+++||+ ++|..+..-|..
T Consensus 392 ~ep~AA~laaLTedE~elGvaiIDmGgGTTd~sVf~~g~lv~--a~~ip~gG~----~VT~DIA~~Lg~----------- 454 (607)
T 1nbw_A 392 VEANMAIAGALTTPGCAAPLAILDLGAGSTDAAIVNAEGQIT--AVHLAGAGN----MVSLLIKTELGL----------- 454 (607)
T ss_dssp CHHHHHHHHHTTSTTCCSSEEEEEECSSEEEEEEECSSSCEE--EEEEECCHH----HHHHHHHHHHTC-----------
T ss_pred ccHHHhhhhhcCCCCCcCCeEEEEeCCCcceEEEEcCCcEEE--EEEeccchH----HHHHHHHHHhCC-----------
Confidence 677777777632 2 479999999999999999997773 457899999 999998876631
Q ss_pred ccchhhHHHHHHHHHHcee
Q 007563 347 LTKAMDLLMLNRIKESYCE 365 (598)
Q Consensus 347 l~~~~d~~l~e~lKe~~c~ 365 (598)
-|...+|+||. |-.
T Consensus 455 ----~d~~~AErIK~-YG~ 468 (607)
T 1nbw_A 455 ----EDLSLAEAIKK-YPL 468 (607)
T ss_dssp ----SCHHHHHHHHH-SCE
T ss_pred ----CCHHHHHHhcc-cCc
Confidence 24788999998 643
No 23
>2d0o_A DIOL dehydratase-reactivating factor large subunit; chaperone; HET: ADP; 2.00A {Klebsiella oxytoca} SCOP: c.8.6.1 c.55.1.6 c.55.1.6 PDB: 2d0p_A
Probab=97.42 E-value=0.00051 Score=74.61 Aligned_cols=95 Identities=15% Similarity=0.170 Sum_probs=66.6
Q ss_pred cHHHHHHHHHHHHhcCCCeEeeehhhHHHHhhcCC----c-eEEEEEeCCCcEEEEEeeCCeeeccCcEEeccccccChH
Q 007563 249 NREIKEMLSIVLRDLRFASAVVHQEGLAAVFGNGL----S-TACVVNMGAQVTSVICVEDGVALPNTEKTLPFGGEVQIL 323 (598)
Q Consensus 249 ~~~vr~l~ellfe~~~f~~v~~~qesv~a~fgaG~----~-sa~VVDiGa~~TsV~pV~dG~~l~~s~~~l~~GG~~~~~ 323 (598)
+..++.+.+.+=+.++.+-=.=.-++.||.+|+=. . -.|+||+|+.+|+++-+.+|..+. ...+++||+
T Consensus 367 ~~~m~NI~~cVer~~gL~veV~g~ep~AAglaaLTeDE~eLGvaiIDmGGGTTd~sVf~~G~lv~--a~~ip~gG~---- 440 (610)
T 2d0o_A 367 RLQMAMIAREIEQKLNIDVQIGGAEAEAAILGALTTPGTTRPLAILDLGAGSTDASIINPKGDII--ATHLAGAGD---- 440 (610)
T ss_dssp CCCHHHHHHHHHHHHCCEEEEEEEHHHHHHHHHTTSTTCCSSEEEEEECSSEEEEEEECTTCCEE--EEEEECSHH----
T ss_pred HHHHHHHHHHHHhccCCcceeccccHHHhhhhhcCCCCCcCCeEEEEeCCCcceEEEEcCCcEEE--EEEeccchH----
Confidence 33444555555555565211111677777777632 2 479999999999999999998773 457899999
Q ss_pred HHHHHHHHHHHhcCCCCCcccccccchhhHHHHHHHHHHcee
Q 007563 324 DISRCLLWTQRHHQTWPQIRTDILTKAMDLLMLNRIKESYCE 365 (598)
Q Consensus 324 dit~~l~~lL~~~~~~p~~~~~~l~~~~d~~l~e~lKe~~c~ 365 (598)
++|..+..-|.. -|...+|+||. |-.
T Consensus 441 ~VT~DIA~~Lgt---------------~d~~~AErIK~-YG~ 466 (610)
T 2d0o_A 441 MVTMIIARELGL---------------EDRYLAEEIKK-YPL 466 (610)
T ss_dssp HHHHHHHHHHTC---------------CCHHHHHHHHH-SCE
T ss_pred HHHHHHHHHhCC---------------CCHHHHHHhcc-cCc
Confidence 999998876631 24788999998 643
No 24
>3js6_A Uncharacterized PARM protein; partition, segregation, filament, unknown function; 1.95A {Staphylococcus aureus}
Probab=96.95 E-value=0.00082 Score=70.50 Aligned_cols=68 Identities=7% Similarity=0.102 Sum_probs=58.8
Q ss_pred CCeEeeehhhHHHHhhcCC-----------ceEEEEEeCCCcEEEEEeeCCeeeccCcEEeccccccChHHHHHHHHHHH
Q 007563 265 FASAVVHQEGLAAVFGNGL-----------STACVVNMGAQVTSVICVEDGVALPNTEKTLPFGGEVQILDISRCLLWTQ 333 (598)
Q Consensus 265 f~~v~~~qesv~a~fgaG~-----------~sa~VVDiGa~~TsV~pV~dG~~l~~s~~~l~~GG~~~~~dit~~l~~lL 333 (598)
+..|.+++|+++|+|+++. ...+|||||+.+|.++.+.+|.++......++.||+ .+++.+.+.+
T Consensus 154 I~~V~v~pE~~~a~~~~~~~~~~~~~~~~~~~~~vvDiGggTtd~~v~~~~~~~~~~s~s~~~G~~----~~~~~i~~~l 229 (355)
T 3js6_A 154 VKGVKIVAQPMGTLLDLNMENGKVFKAFTEGKYSVLDFGSGTTIIDTYQNMKRVEEESFVINKGTI----DFYKRIASHV 229 (355)
T ss_dssp EEEEEEEEHHHHHHHHTTEETTEECHHHHTCEEEEEEECSSCEEEEEEETTEECGGGCEEESCCHH----HHHHHHHHHT
T ss_pred EEEEEEEeCcHHHHHHHHHccCccccccccCcEEEEEeCCCcEEEEEEcCCEEccccccCcchHHH----HHHHHHHHHH
Confidence 4789999999999999863 357999999999999999999998887888999999 9999999887
Q ss_pred Hhc
Q 007563 334 RHH 336 (598)
Q Consensus 334 ~~~ 336 (598)
+..
T Consensus 230 ~~~ 232 (355)
T 3js6_A 230 SKK 232 (355)
T ss_dssp C--
T ss_pred HHh
Confidence 643
No 25
>2zgy_A Plasmid segregation protein PARM; plasmid partition, structural protein; HET: GDP; 1.90A {Escherichia coli} SCOP: c.55.1.1 c.55.1.1 PDB: 1mwk_A* 2qu4_A 1mwm_A* 2zgz_A* 2zhc_A* 3iku_A 3iky_A
Probab=96.48 E-value=0.0015 Score=67.19 Aligned_cols=70 Identities=10% Similarity=0.125 Sum_probs=57.7
Q ss_pred hcCCCeEeeehhhHHHHhhcC-----CceEEEEEeCCCcEEEEEeeCCee-eccCcEEeccccccChHHHHHHHHHHHHh
Q 007563 262 DLRFASAVVHQEGLAAVFGNG-----LSTACVVNMGAQVTSVICVEDGVA-LPNTEKTLPFGGEVQILDISRCLLWTQRH 335 (598)
Q Consensus 262 ~~~f~~v~~~qesv~a~fgaG-----~~sa~VVDiGa~~TsV~pV~dG~~-l~~s~~~l~~GG~~~~~dit~~l~~lL~~ 335 (598)
.++|..+.++.++++|+++++ ....+|||||+.+|.++.+.+|.. +..+...+++||+ ++++.+...+..
T Consensus 137 ~~~i~~v~~~~e~~aa~~~~~~~~~~~~~~~vvDiGggttd~~v~~~g~~~v~~~~~~~~lGg~----~~~~~I~~~l~~ 212 (320)
T 2zgy_A 137 TFTIKDVKVMPESIPAGYEVLQELDELDSLLIIDLGGTTLDISQVMGKLSGISKIYGDSSLGVS----LVTSAVKDALSL 212 (320)
T ss_dssp CCEEEEEEEEESSHHHHHHHHHHSCTTCEEEEEEECSSCEEEEEEEGGGCCEEEEEEECSCCTH----HHHHHHHHHTTC
T ss_pred EEEEEEEEEecCcHHHHHhhhccccCCCCEEEEEcCCCeEEEEEEeCCeeEEeeecCCccccHH----HHHHHHHHHHHH
Confidence 456788999999999999874 236799999999999999999875 4434467799999 999999887753
No 26
>4apw_A ALP12; actin-like protein; 19.70A {Clostridium tetani}
Probab=96.37 E-value=0.0024 Score=66.07 Aligned_cols=67 Identities=13% Similarity=0.125 Sum_probs=57.3
Q ss_pred CCeEeeehhhHHHHhhcC----CceEEEEEeCCCcEEEEEeeCCeeeccCcEEeccccccChHHHHHHHHHHHHh
Q 007563 265 FASAVVHQEGLAAVFGNG----LSTACVVNMGAQVTSVICVEDGVALPNTEKTLPFGGEVQILDISRCLLWTQRH 335 (598)
Q Consensus 265 f~~v~~~qesv~a~fgaG----~~sa~VVDiGa~~TsV~pV~dG~~l~~s~~~l~~GG~~~~~dit~~l~~lL~~ 335 (598)
+..|.+.+|+++|.|... ..+.+|||||+.+|.++.+.+|.++......+++||+ ++++.+.+.++.
T Consensus 149 I~~v~v~pe~~ga~~~~~~~~~~~~v~vvDiGggTtd~~v~~~g~~~~~~~~~~~~G~~----~~~~~i~~~l~~ 219 (329)
T 4apw_A 149 ITDITIKAEGSGVLFLEQENFKNKNVAVIDFGGLNMGFSLYRNCVVNPSERFIEEHGVK----DLIIRVGDALTD 219 (329)
T ss_dssp EEEEEEEEHHHHHHHHSCCCCTTCEEEEEEECSSCEEEEEEETTEECGGGCEEESCCHH----HHHHHHHTSSSS
T ss_pred EeEEEEEeccHHHHhhcchhhccCCEEEEEeCCCcEEEEEEECCEEeeccccchhhHHH----HHHHHHHHHHHh
Confidence 467999999999999862 2467999999999999999999988777778999999 999998876543
No 27
>1t6c_A Exopolyphosphatase; alpha/beta protein, actin-like fold, hydrolase; 1.53A {Aquifex aeolicus} SCOP: c.55.1.8 c.55.1.8 PDB: 1t6d_A 2j4r_A*
Probab=84.45 E-value=2.7 Score=42.75 Aligned_cols=42 Identities=19% Similarity=0.294 Sum_probs=35.8
Q ss_pred CceEEEEEeCCCcEEEEEeeCCeeeccCcEEeccccccChHHHHHHHH
Q 007563 283 LSTACVVNMGAQVTSVICVEDGVALPNTEKTLPFGGEVQILDISRCLL 330 (598)
Q Consensus 283 ~~sa~VVDiGa~~TsV~pV~dG~~l~~s~~~l~~GG~~~~~dit~~l~ 330 (598)
..+++|||||.++|.++-+.+|.+. ....+++|+- .+++.|.
T Consensus 137 ~~~~lvvDIGGGStEl~~~~~~~~~--~~~Sl~~G~v----~l~e~~~ 178 (315)
T 1t6c_A 137 EGEVCVVDQGGGSTEYVFGKGYKVR--EVISLPIGIV----NLTETFF 178 (315)
T ss_dssp CSEEEEEEEETTEEEEEEEETTEEE--EEEEECCCHH----HHHHHHC
T ss_pred CCCEEEEEeCCCcEEEEEEeCCcee--eEEEEeccHH----HHHHHhc
Confidence 4579999999999999999998775 3567999999 8888763
No 28
>3cet_A Conserved archaeal protein; Q6M145, MRR63, NESG, XRAY, structure, structural genomics, PSI-2, protein structure initiative; 1.80A {Methanococcus maripaludis S2} PDB: 3c0b_A
Probab=79.41 E-value=1.5 Score=44.95 Aligned_cols=25 Identities=24% Similarity=0.501 Sum_probs=23.3
Q ss_pred ceEEEEEeCCCcEEEEEeeCCeeec
Q 007563 284 STACVVNMGAQVTSVICVEDGVALP 308 (598)
Q Consensus 284 ~sa~VVDiGa~~TsV~pV~dG~~l~ 308 (598)
.++++||||..+|.|+|+.+|.++.
T Consensus 127 ~~~llvDIGsTTTDIipi~~G~pl~ 151 (334)
T 3cet_A 127 ENCILVDMGSTTTDIIPIVEGKVVA 151 (334)
T ss_dssp SSEEEEEECSSCEEEEEEETTEECC
T ss_pred CCEEEEEcCcchhhhhhhcCCeecc
Confidence 5799999999999999999999975
No 29
>4ehu_A Activator of 2-hydroxyisocaproyl-COA dehydratase; actin fold, ATPase, electron transfer, ATP/ADP binding; HET: ANP; 1.60A {Clostridium difficile} PDB: 4eht_A* 4eia_A
Probab=79.30 E-value=0.4 Score=47.59 Aligned_cols=66 Identities=20% Similarity=0.309 Sum_probs=45.4
Q ss_pred CHHHHHHHHHhcCCChhhHHHhhcCeEEecCCCCCCChHHHHHHHHHhhCCCCCCcceEEEcCCCCCCccceEeceeeec
Q 007563 475 GLAEAVTSSILSTGRIDLQRKLFCSIQLIGGVALTGGLIPAVEERVLHAIPSNEAIDMVEVLQSRTNPTYVSWKGGAVLG 554 (598)
Q Consensus 475 ~L~~aI~~sI~~~~~~d~r~~L~~nIvLvGG~S~ipG~~~rL~~eL~~~~p~~~~i~~V~v~~~~~dp~~~aWkGgSIla 554 (598)
++.++|.+.+... -.+......|+|+||.+..|++.++|++.+.. ++.+ +.+|.+.+=.||+++|
T Consensus 188 ~~~~~v~~~l~~~---~~~~~~~~~vvl~GGva~n~~lr~~l~~~~g~---------~~~~---p~~p~~~~A~GAAl~A 252 (276)
T 4ehu_A 188 GIHTSVAKRVSSL---VKRIGVQRNVVMVGGVARNSGIVRAMAREINT---------EIIV---PDIPQLTGALGAALYA 252 (276)
T ss_dssp HHHHHHHHHHHHH---HHHHCCCSSEEEESGGGGCHHHHHHHHHHHTS---------CEEC---CSSGGGHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH---HHhcccCCeEEEecCccchHHHHHHHHHHHCC---------Ceee---CCCcchHHHHHHHHHH
Confidence 4555555554332 23344557899999999999999999887741 2232 2467888779999998
Q ss_pred c
Q 007563 555 I 555 (598)
Q Consensus 555 ~ 555 (598)
.
T Consensus 253 ~ 253 (276)
T 4ehu_A 253 F 253 (276)
T ss_dssp H
T ss_pred H
Confidence 4
No 30
>3mdq_A Exopolyphosphatase; structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2, hydrol; HET: MSE; 1.50A {Cytophaga hutchinsonii}
Probab=77.04 E-value=2.2 Score=43.52 Aligned_cols=40 Identities=13% Similarity=0.265 Sum_probs=34.1
Q ss_pred ceEEEEEeCCCcEEEEEeeCCeeeccCcEEeccccccChHHHHHHH
Q 007563 284 STACVVNMGAQVTSVICVEDGVALPNTEKTLPFGGEVQILDISRCL 329 (598)
Q Consensus 284 ~sa~VVDiGa~~TsV~pV~dG~~l~~s~~~l~~GG~~~~~dit~~l 329 (598)
..++|||||.++|.++-+.+|.+. ....+++|.- -+++.|
T Consensus 131 ~~~lviDIGGGStEl~~~~~~~~~--~~~Sl~lG~v----rl~e~f 170 (315)
T 3mdq_A 131 HISLAMDIGGGSVEFIIGNKNEIL--WKQSFEIGGQ----RLIDRF 170 (315)
T ss_dssp CCEEEEEECSSCEEEEEECSSCEE--EEEEESCCHH----HHHHHS
T ss_pred CCEEEEEeCCCceEEEEEECCeEe--eeEEEechhh----HHHHHh
Confidence 579999999999999999998776 3568999998 777755
No 31
>3cer_A Possible exopolyphosphatase-like protein; NESG, BLR13, Q8G5J2, X-RAY, structure, structural genomics, PSI-2; 2.40A {Bifidobacterium longum NCC2705}
Probab=74.50 E-value=2.6 Score=43.52 Aligned_cols=42 Identities=14% Similarity=0.200 Sum_probs=32.7
Q ss_pred ceEEEEEeCCCcEEEEEeeC--Ceee--ccCcEEeccccccChHHHHHHH
Q 007563 284 STACVVNMGAQVTSVICVED--GVAL--PNTEKTLPFGGEVQILDISRCL 329 (598)
Q Consensus 284 ~sa~VVDiGa~~TsV~pV~d--G~~l--~~s~~~l~~GG~~~~~dit~~l 329 (598)
..++|||||.++|.++-+.+ +.+. ......+++|+. .+|+.|
T Consensus 146 ~~~lviDIGGGStel~~~~~~~~~~~~~~~~~~SlplG~v----~lt~~~ 191 (343)
T 3cer_A 146 APYLVVDLGGGSTELVIGGDGVSAPTTQVQGAFSMNIGSV----RMTERH 191 (343)
T ss_dssp SSEEEEEECSSCEEEEECCCSSSSCTTSCSEEEEESCCHH----HHHHHT
T ss_pred CCEEEEEeCCCceEEEEeecCccCcccccceeEEEehhHH----HHHHHh
Confidence 46999999999999999877 3321 013568999999 888876
No 32
>1u6z_A Exopolyphosphatase; alpha/beta protein, askha (acetate and sugar kinases, HSC70, superfamily; 1.90A {Escherichia coli} SCOP: a.211.1.5 c.55.1.8 c.55.1.8 PDB: 2flo_A*
Probab=67.36 E-value=6.2 Score=42.96 Aligned_cols=40 Identities=13% Similarity=0.206 Sum_probs=34.5
Q ss_pred eEEEEEeCCCcEEEEEeeCCeeeccCcEEeccccccChHHHHHHHH
Q 007563 285 TACVVNMGAQVTSVICVEDGVALPNTEKTLPFGGEVQILDISRCLL 330 (598)
Q Consensus 285 sa~VVDiGa~~TsV~pV~dG~~l~~s~~~l~~GG~~~~~dit~~l~ 330 (598)
.++|||||.++|.++-+.+|.+. ....+++|.- .+|+.|.
T Consensus 138 ~~lviDIGGGStEl~~~~~~~~~--~~~Sl~lG~v----rlte~f~ 177 (513)
T 1u6z_A 138 RKLVIDIGGGSTELVIGENFEPI--LVESRRMGCV----SFAQLYF 177 (513)
T ss_dssp CEEEEEECSSCEEEEEEETTEEE--EEEEESCCHH----HHHHHHS
T ss_pred CEEEEEECCCcEEEEEEeCCeee--EEEEEeccHH----HHHHHHc
Confidence 69999999999999999888875 4568999998 8888663
No 33
>3hi0_A Putative exopolyphosphatase; 17739545, structural genomics, center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE; 2.30A {Agrobacterium tumefaciens str}
Probab=66.14 E-value=7.7 Score=42.13 Aligned_cols=39 Identities=23% Similarity=0.321 Sum_probs=33.1
Q ss_pred ceEEEEEeCCCcEEEEEeeCCeeeccCcEEeccccccChHHHHHH
Q 007563 284 STACVVNMGAQVTSVICVEDGVALPNTEKTLPFGGEVQILDISRC 328 (598)
Q Consensus 284 ~sa~VVDiGa~~TsV~pV~dG~~l~~s~~~l~~GG~~~~~dit~~ 328 (598)
..++|||||.++|.++-+.+|.+. ....+++|.- -+++.
T Consensus 140 ~~~lvvDIGGGStEl~~~~~~~~~--~~~Sl~lG~v----rl~e~ 178 (508)
T 3hi0_A 140 PDGIAGDLGGGSLELIDIKDKSCG--EGITLPLGGL----RLSEQ 178 (508)
T ss_dssp CEEEEEEECSSCEEEEEEETTEEC--CCEEESCCHH----HHHHH
T ss_pred CCeEEEEeCCCceEEEEeeCCeee--eEEEecceEE----ehhhc
Confidence 467999999999999999999876 4678999987 77763
No 34
>3aap_A Ectonucleoside triphosphate diphosphohydrolase I; adenosine triphosphatase, ntpdase; 1.60A {Legionella pneumophila} PDB: 3aaq_A* 3aar_A*
Probab=47.21 E-value=18 Score=37.34 Aligned_cols=36 Identities=14% Similarity=0.218 Sum_probs=27.0
Q ss_pred ceEEEEEeCCCcEEEEEeeC--CeeeccCcEEeccccc
Q 007563 284 STACVVNMGAQVTSVICVED--GVALPNTEKTLPFGGE 319 (598)
Q Consensus 284 ~sa~VVDiGa~~TsV~pV~d--G~~l~~s~~~l~~GG~ 319 (598)
.+.+|||||..+|.|+-..+ +.+.......+++||.
T Consensus 140 ~t~~v~DiGGGStei~~~~~~~~~~~~~~~~sl~lG~~ 177 (353)
T 3aap_A 140 KSVGVMDMGGASVQIVFPMPKNAEISKHNQVELNIYGQ 177 (353)
T ss_dssp SCEEEEEECSSEEEEEEECCCCTTSCGGGEEEEEETTE
T ss_pred ccEEEEEeCCCceEEEEecCCccccCCCceEEEEECCc
Confidence 47999999999999998744 3343333577888886
No 35
>2ews_A Pantothenate kinase; PANK, structural genomics, structural genomics consortium, S transferase; HET: ANP; 2.05A {Staphylococcus aureus subsp} SCOP: c.55.1.14
Probab=44.67 E-value=6.1 Score=39.66 Aligned_cols=73 Identities=14% Similarity=0.011 Sum_probs=46.5
Q ss_pred CCHHHHHHHHHhcCCChhhHHHhhcCeEEecC-CCCCCChHHHHHHHHHhhCCCCCCcceEEEcCCCCCCccceEeceee
Q 007563 474 IGLAEAVTSSILSTGRIDLQRKLFCSIQLIGG-VALTGGLIPAVEERVLHAIPSNEAIDMVEVLQSRTNPTYVSWKGGAV 552 (598)
Q Consensus 474 ~~L~~aI~~sI~~~~~~d~r~~L~~nIvLvGG-~S~ipG~~~rL~~eL~~~~p~~~~i~~V~v~~~~~dp~~~aWkGgSI 552 (598)
.+|..+|.+.|...+-.-.++.=..+|+++|| .+..|++.++|++.+... . .++.++ .++++..=.||++
T Consensus 214 asl~~sV~~~I~~la~~~a~~~~i~~Vvf~Gg~l~~n~~l~~~l~~~~~~~-~-----~~~~~p---~~~~~~gAlGAaL 284 (287)
T 2ews_A 214 AAVIGVVGEVVTTMAITVAREFKTENIVYIGSSFHNNALLRKVVEDYTVLR-G-----CKPYYV---ENGAFSGAIGALY 284 (287)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTCCEEEEESGGGTTCHHHHHHHHHHHHHT-T-----CEEEEC---TTGGGHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCCeEEEeCCchhcCHHHHHHHHHHHhhC-C-----ceEEEC---CCccHHHHHHHHH
Confidence 34555665555332111112333457999999 899999999999876532 1 134443 4789999999887
Q ss_pred ecc
Q 007563 553 LGI 555 (598)
Q Consensus 553 la~ 555 (598)
+++
T Consensus 285 ~~~ 287 (287)
T 2ews_A 285 LEK 287 (287)
T ss_dssp TCC
T ss_pred hCC
Confidence 763
No 36
>2h3g_X Biosynthetic protein; pantothenate kinase, anthrax, type III pantothenate kinase, COAX, COAA, askha; 2.00A {Bacillus anthracis str}
Probab=37.34 E-value=2.4e+02 Score=27.49 Aligned_cols=89 Identities=12% Similarity=0.175 Sum_probs=46.1
Q ss_pred cHHHHHHHHHHHhhhhcCCCCCCCCccceEEecCCCCCcHHHHHHHHHHHHhcCCCeEee------------------eh
Q 007563 211 VLEDLYAIWDWILTEKLHIPRSERNLYSAILVLPESFDNREIKEMLSIVLRDLRFASAVV------------------HQ 272 (598)
Q Consensus 211 ~~~dle~i~~~~l~~~L~i~~~~~~~y~~VLvip~~~~~~~vr~l~ellfe~~~f~~v~~------------------~q 272 (598)
..+++...+...+. ..++++.+.. .++++-. .+...+.+.+++-+.|+.+-+.+ .-
T Consensus 35 t~de~~~~l~~ll~-~~~~~~~~i~---~iiISSV--vp~~~~~l~~~~~~~~~~~~~~v~~~~~~gl~~~y~~P~~lG~ 108 (268)
T 2h3g_X 35 TEDEYGMLVKQLLE-HEGLSFEDVK---GIIVSSV--VPPIMFALERMCEKYFKIKPLVVGPGIKTGLNIKYENPREVGA 108 (268)
T ss_dssp CHHHHHHHHHHHHH-HTTCCGGGCC---EEEEEES--CHHHHHHHHHHHHHHTCCCCEECSTTCCCCCEECSSCGGGSCH
T ss_pred CHHHHHHHHHHHHH-HcCCCcccCc---EEEEEcc--ChhHHHHHHHHHHHHhCCCeEEEcCCCCCCccccCCChhhcCH
Confidence 46666666666663 3455543332 3555422 23333335555555556543332 12
Q ss_pred hhHHHHhhc----CCceEEEEEeCCCcEEEEEe-eCCeee
Q 007563 273 EGLAAVFGN----GLSTACVVNMGAQVTSVICV-EDGVAL 307 (598)
Q Consensus 273 esv~a~fga----G~~sa~VVDiGa~~TsV~pV-~dG~~l 307 (598)
+=+++++|+ | ..+||||+|.. |++..| .+|.-+
T Consensus 109 DR~~~~vaA~~~~~-~~~iVVD~GTA-tT~d~v~~~g~~l 146 (268)
T 2h3g_X 109 DRIVNAVAGIHLYG-SPLIIVDFGTA-TTYCYINEEKHYM 146 (268)
T ss_dssp HHHHHHHHHHHHHC-SSEEEEEESSE-EEEEEECTTSEEE
T ss_pred HHHHHHHHHHHhcC-CCEEEEECCCc-eEEEEECCCCcEE
Confidence 223444443 3 57999999955 557777 455443
No 37
>2zgy_A Plasmid segregation protein PARM; plasmid partition, structural protein; HET: GDP; 1.90A {Escherichia coli} SCOP: c.55.1.1 c.55.1.1 PDB: 1mwk_A* 2qu4_A 1mwm_A* 2zgz_A* 2zhc_A* 3iku_A 3iky_A
Probab=35.71 E-value=6.3 Score=39.70 Aligned_cols=47 Identities=21% Similarity=0.290 Sum_probs=30.4
Q ss_pred hcCeEEecCCCCCCChHHHHHHHHHhhCCCCCCcceEEEcCCCCCCccceEeceeeec
Q 007563 497 FCSIQLIGGVALTGGLIPAVEERVLHAIPSNEAIDMVEVLQSRTNPTYVSWKGGAVLG 554 (598)
Q Consensus 497 ~~nIvLvGG~S~ipG~~~rL~~eL~~~~p~~~~i~~V~v~~~~~dp~~~aWkGgSIla 554 (598)
...|+|+||+|.+ +.+.|+ ..++... .++.+. .+|++++=+|+.++|
T Consensus 273 ~~~vvl~GGga~l--l~~~l~----~~~~~~~--~~~~~~---~~P~~a~A~G~~~~~ 319 (320)
T 2zgy_A 273 YTHVMVIGGGAEL--ICDAVK----KHTQIRD--ERFFKT---NNSQYDLVNGMYLIG 319 (320)
T ss_dssp CCEEEEESTTHHH--HHHHHH----HTSCCCG--GGEECC---SCGGGHHHHHHHHHH
T ss_pred CCeEEEECChHHH--HHHHHH----HHhCCCC--CceeeC---CCcHHHHHHHHHHhc
Confidence 3779999999987 554444 4443210 023332 578999999987765
No 38
>2i7n_A Pantothenate kinase 1; PANK, transferase; HET: ACO; 1.90A {Homo sapiens} SCOP: c.55.1.14 c.55.1.14 PDB: 3smp_A* 3sms_A* 2i7p_A* 3mk6_A*
Probab=33.31 E-value=16 Score=37.77 Aligned_cols=75 Identities=11% Similarity=0.036 Sum_probs=48.3
Q ss_pred CCHHHHHHHHHhcCCChhhHHHhhcCeEEecC-CCCCCChHHHHHHHHHhhCCCCCCcceEEEcCCCCCCccceEeceee
Q 007563 474 IGLAEAVTSSILSTGRIDLQRKLFCSIQLIGG-VALTGGLIPAVEERVLHAIPSNEAIDMVEVLQSRTNPTYVSWKGGAV 552 (598)
Q Consensus 474 ~~L~~aI~~sI~~~~~~d~r~~L~~nIvLvGG-~S~ipG~~~rL~~eL~~~~p~~~~i~~V~v~~~~~dp~~~aWkGgSI 552 (598)
.+|..+|.+.|...+-.-.++.=..+|+++|| .+.-|++.+.|+..|.---... . ++.++ .+++++.=+||++
T Consensus 283 ~gll~sVa~~I~~lA~l~A~~~~i~~IvftGgfla~n~~~~~~L~~~l~~ws~g~--~-~~~~~---~~~~y~GAlGAaL 356 (360)
T 2i7n_A 283 RATLVTITNNIGSIARMCALNENIDRVVFVGNFLRINMVSMKLLAYAMDFWSKGQ--L-KALFL---EHEGYFGAVGALL 356 (360)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTCCCEEEESGGGCSSSHHHHHHHHHHHHHTTTS--C-CEEEE---TTTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCeEEEeCcccccCHHHHHHHHHHHhhhhcCC--e-eEEEc---CCccHHHHHHHHH
Confidence 45667777666543111124444468999999 9999999999999986321111 1 33443 3678888888876
Q ss_pred ec
Q 007563 553 LG 554 (598)
Q Consensus 553 la 554 (598)
++
T Consensus 357 ~~ 358 (360)
T 2i7n_A 357 EL 358 (360)
T ss_dssp HH
T ss_pred Hh
Confidence 53
No 39
>1hux_A Activator of (R)-2-hydroxyglutaryl-COA dehydratase; actin fold, metal binding protein; HET: ADP; 3.00A {Acidaminococcus fermentans} SCOP: c.55.1.5
Probab=32.01 E-value=8.4 Score=38.01 Aligned_cols=56 Identities=23% Similarity=0.306 Sum_probs=38.5
Q ss_pred hcCeEEecCCCCCCChHHHHHHHHHhhCCCCCCcceEEEcCCCCCCccceEeceeeeccccCccceee
Q 007563 497 FCSIQLIGGVALTGGLIPAVEERVLHAIPSNEAIDMVEVLQSRTNPTYVSWKGGAVLGILDFGRDAWI 564 (598)
Q Consensus 497 ~~nIvLvGG~S~ipG~~~rL~~eL~~~~p~~~~i~~V~v~~~~~dp~~~aWkGgSIla~L~s~~~~wI 564 (598)
-..|+++||+++-+++.+.+.+.|.. +|.+ +..+++..=.||+++|....-+..|-
T Consensus 209 ~~~i~~~GG~a~n~~~~~~~~~~lg~---------~v~~---p~~~~~~~AlGAAl~A~~~~~~~~~~ 264 (270)
T 1hux_A 209 VKDVVMTGGVAQNYGVRGALEEGLGV---------EIKT---SPLAQYNGALGAALYAYKKAAKSAWS 264 (270)
T ss_dssp CSSEEEESGGGGCHHHHHHHHHHHCS---------CEEC---CGGGGGHHHHHHHHHHHHHTTC----
T ss_pred CCeEEEeCccccCHHHHHHHHHHHCC---------CeEe---CCCcchHhHHHHHHHHHHhhhccccc
Confidence 36799999999999999999988852 2333 23567777889999986543345553
No 40
>3js6_A Uncharacterized PARM protein; partition, segregation, filament, unknown function; 1.95A {Staphylococcus aureus}
Probab=31.86 E-value=5.6 Score=41.07 Aligned_cols=62 Identities=23% Similarity=0.126 Sum_probs=37.7
Q ss_pred HHHHHHHHHhcCCChhhHHHhhcCeEEecCCCCCCC--hHHHHHHHHHhhCCCCCCcceEEEcCCCCCCccceEeceeee
Q 007563 476 LAEAVTSSILSTGRIDLQRKLFCSIQLIGGVALTGG--LIPAVEERVLHAIPSNEAIDMVEVLQSRTNPTYVSWKGGAVL 553 (598)
Q Consensus 476 L~~aI~~sI~~~~~~d~r~~L~~nIvLvGG~S~ipG--~~~rL~~eL~~~~p~~~~i~~V~v~~~~~dp~~~aWkGgSIl 553 (598)
+.+.|.+.|.+.- .+ .+.+..|+|+||||.++| +.+.|++++ |. . .||+++.=+|...+
T Consensus 273 ~~~~I~~~i~~~l-~~--~~~~~~Ivl~GGGa~l~~~~l~~~i~~~~----~~---------~---~~p~~anA~G~~~~ 333 (355)
T 3js6_A 273 LIEEVMSNFEITV-GN--INSIDRIIVTGGGANIHFDSLSHYYSDVF----EK---------A---DDSQFSNVRGYEKL 333 (355)
T ss_dssp HHHHHHHHHHHHT-CC--TTSCSEEEEESTTHHHHHHHHHHHSSSCE----EC---------C---SSGGGHHHHHHHHH
T ss_pred HHHHHHHHHHHHh-hc--hhhccEEEEECcchhcchhhHHHHHHHHC----CC---------C---CCcHHHHHHHHHHH
Confidence 3444455554431 11 245688999999998876 444444321 11 1 48899999998777
Q ss_pred ccc
Q 007563 554 GIL 556 (598)
Q Consensus 554 a~L 556 (598)
+..
T Consensus 334 ~~~ 336 (355)
T 3js6_A 334 GEL 336 (355)
T ss_dssp HHH
T ss_pred HHH
Confidence 653
No 41
>2fsj_A Hypothetical protein TA0583; actin homologs, archaea, ATPase, MREB, PARM, structural PROT; 1.90A {Thermoplasma acidophilum} SCOP: c.55.1.12 c.55.1.12 PDB: 2fsk_A 2fsn_A*
Probab=30.83 E-value=8.1 Score=39.57 Aligned_cols=32 Identities=13% Similarity=0.138 Sum_probs=24.7
Q ss_pred EEEEcCCCCeeeeecCCCCCCCccceeeEEecC
Q 007563 20 LVVINPGSANIRIGLAQHDTPLNIPHCIARRTS 52 (598)
Q Consensus 20 ~iVihpGS~~lriG~asd~~P~~ip~~iA~~~~ 52 (598)
+|-|..|..|.++-. .+-.-..+|++||....
T Consensus 23 ~igiDlG~~~tkv~~-~~g~~~~~PSvva~~~~ 54 (346)
T 2fsj_A 23 VVGLDVGYGDTKVIG-VDGKRIIFPSRWAVTET 54 (346)
T ss_dssp EEEEEECSSEEEEEC-GGGCEEEEESCEEEECC
T ss_pred EEEEecCCcceeEEe-cCCCEEEecceeeeccc
Confidence 588999999999864 34445579999997643
No 42
>4apw_A ALP12; actin-like protein; 19.70A {Clostridium tetani}
Probab=29.48 E-value=18 Score=36.74 Aligned_cols=46 Identities=17% Similarity=0.303 Sum_probs=31.4
Q ss_pred hhcCeEEecCCCCCCChHHHHHHHHHhhCCCCCCcceEEEcCCCCCCccceEeceeeecc
Q 007563 496 LFCSIQLIGGVALTGGLIPAVEERVLHAIPSNEAIDMVEVLQSRTNPTYVSWKGGAVLGI 555 (598)
Q Consensus 496 L~~nIvLvGG~S~ipG~~~rL~~eL~~~~p~~~~i~~V~v~~~~~dp~~~aWkGgSIla~ 555 (598)
+...|+|+||||++ +.+.|++++ +. ++.+. .||.+++=+|.-.++.
T Consensus 278 ~~~~IvltGGGA~l--~~~~l~~~~----~~-----~v~v~---~~P~~a~a~G~~~~~~ 323 (329)
T 4apw_A 278 QLDSLIFIGGTTQK--LKEQISKTY----PN-----NSIIT---NNSQWTTCEGLYKVAV 323 (329)
T ss_dssp SCSEEEEESTTHHH--HHHHHHHHS----TT-----CEECC---SSGGGHHHHHHHHHHH
T ss_pred HccEEEEECChHHH--HHHHHHHHc----CC-----CCEec---CCChhhHHHHHHHHHh
Confidence 46889999999998 455555543 31 23443 4788888888766554
No 43
>2gup_A ROK family protein; sugar kinase, streptococcus pneumoniae TIGR4, AP sucrose, structural genomics, PSI; HET: SUC; 2.01A {Streptococcus pneumoniae} SCOP: c.55.1.10 c.55.1.10
Probab=27.23 E-value=1.1e+02 Score=29.68 Aligned_cols=52 Identities=10% Similarity=0.138 Sum_probs=41.6
Q ss_pred HHHHHHHhcCCCeEeeehhhHHHHhhc-----CCceEEEEEeCCCcEEEEEeeCCeeecc
Q 007563 255 MLSIVLRDLRFASAVVHQEGLAAVFGN-----GLSTACVVNMGAQVTSVICVEDGVALPN 309 (598)
Q Consensus 255 l~ellfe~~~f~~v~~~qesv~a~fga-----G~~sa~VVDiGa~~TsV~pV~dG~~l~~ 309 (598)
+.+.| +.|++| |++.++.-++++|. +..+.++|-+|.. +-..-|.+|.++..
T Consensus 87 l~~~l-~~~~~p-v~v~NDa~aaa~~e~~~~~~~~~~v~l~~GtG-iG~giv~~G~l~~G 143 (292)
T 2gup_A 87 WYEAL-SSYQLP-VHLENDANCVGLSELLAHPELENAACVVIGTG-IGGAMIINGRLHRG 143 (292)
T ss_dssp HHHHT-GGGCCC-EEEEEHHHHHHHHHHHHCTTCSSEEEEEESSS-EEEEEEETTEEECC
T ss_pred HHHHH-HHcCCC-EEEechHHHHHHHHHHhcCCCCeEEEEEECCc-eEEEEEECCEEEec
Confidence 56677 889998 89999999999883 5668999999986 55666789988754
No 44
>2e1z_A Propionate kinase; TDCD, native, acetate kinase, nucleotide, AP4A, ADP, ATP, AMPPNP, transferase; HET: B4P; 1.98A {Salmonella typhimurium} SCOP: c.55.1.2 c.55.1.2 PDB: 1x3n_A* 2e1y_A 1x3m_A* 2e20_A*
Probab=24.80 E-value=29 Score=36.51 Aligned_cols=27 Identities=22% Similarity=0.368 Sum_probs=22.8
Q ss_pred ceEEEEEeCCCcEEEEEeeCCeeeccCc
Q 007563 284 STACVVNMGAQVTSVICVEDGVALPNTE 311 (598)
Q Consensus 284 ~sa~VVDiGa~~TsV~pV~dG~~l~~s~ 311 (598)
..-+|.-+|... |||.|.+|.++..+-
T Consensus 210 ~~lIv~HLGnGa-Si~Ai~~GksVDTsM 236 (415)
T 2e1z_A 210 SGLIVAHLGNGA-SICAVRNGQSVDTSM 236 (415)
T ss_dssp CEEEEEEESSSE-EEEEEETTEEEEESC
T ss_pred cCEEEEEeCCch-hhhheeCCEEEecCC
Confidence 378999999886 999999999996553
No 45
>1g99_A Acetate kinase; alpha/beta, askha (acetate and sugar kinases, HSC70, actin) superfamily, conserved epsilon conformation; HET: ADP; 2.50A {Methanosarcina thermophila} SCOP: c.55.1.2 c.55.1.2 PDB: 1tuu_A* 1tuy_A*
Probab=23.02 E-value=31 Score=36.27 Aligned_cols=26 Identities=19% Similarity=0.336 Sum_probs=22.5
Q ss_pred eEEEEEeCCCcEEEEEeeCCeeeccCc
Q 007563 285 TACVVNMGAQVTSVICVEDGVALPNTE 311 (598)
Q Consensus 285 sa~VVDiGa~~TsV~pV~dG~~l~~s~ 311 (598)
.-+|..+|... |+|.|.+|.++..+-
T Consensus 203 ~lIv~HLGnGa-Si~Ai~~GksVDTsM 228 (408)
T 1g99_A 203 KIITCHLGNGS-SITAVEGGKSVETSM 228 (408)
T ss_dssp EEEEEEESSSE-EEEEEETTEEEEESC
T ss_pred CEEEEEeCCcc-chhheECCEEEEeCC
Confidence 68999999886 999999999996553
No 46
>2nrh_A Transcriptional activator, putative, BAF family; structural genomics, unknown function, putative transcription activator, PSI-2; 2.30A {Campylobacter jejuni} SCOP: c.55.1.13 c.55.1.13
Probab=21.30 E-value=46 Score=31.77 Aligned_cols=30 Identities=17% Similarity=0.339 Sum_probs=19.0
Q ss_pred hhhHHHHhhcCCceEEEEEeCCCcEEEEEeeCC
Q 007563 272 QEGLAAVFGNGLSTACVVNMGAQVTSVICVEDG 304 (598)
Q Consensus 272 qesv~a~fgaG~~sa~VVDiGa~~TsV~pV~dG 304 (598)
-+=++++.|+ ..+||||+|. .|++..|.+|
T Consensus 75 ~DR~~~~vaa--~~~iVVD~GT-A~T~D~v~~g 104 (219)
T 2nrh_A 75 IDRIAACYTI--EDGVVVDAGS-AITIDIISNS 104 (219)
T ss_dssp HHHHHHHTTC--SSSEEEEESS-EEEEEEC---
T ss_pred HHHHHHHhcC--CCeEEEEcCC-cEEEEEEcCC
Confidence 4455666665 4789999995 4666666555
No 47
>3cj1_A Ectonucleoside triphosphate diphosphohydrolase 2; alpha/beta protein, actin-like fold, alternative splicing, calcium, glycoprotein, magnesium; 1.70A {Rattus norvegicus} PDB: 3cj7_A* 3cj9_A* 3cja_A*
Probab=20.53 E-value=84 Score=33.45 Aligned_cols=36 Identities=19% Similarity=0.279 Sum_probs=26.0
Q ss_pred ceEEEEEeCCCcEEEEEeeCCee-eccCcEEeccccc
Q 007563 284 STACVVNMGAQVTSVICVEDGVA-LPNTEKTLPFGGE 319 (598)
Q Consensus 284 ~sa~VVDiGa~~TsV~pV~dG~~-l~~s~~~l~~GG~ 319 (598)
.+..|+|||..+|.|+-+.++.. -++....+.++|.
T Consensus 190 ~t~gvlDlGGgStqi~~~~~~~~~~~~~~~~l~l~g~ 226 (456)
T 3cj1_A 190 GTLGAMDLGGASTQITFETTSPSEDPGNEVHLRLYGQ 226 (456)
T ss_dssp CCCEEEEECSSEEEEEEECCSCCSCGGGEEEEEETTE
T ss_pred CceEEEEcCCCceEEEeccCCccCCCCceEEEEeCCe
Confidence 46789999999999999876642 2344456666665
No 48
>2qm1_A Glucokinase; alpha-beta structure, putative helix-turn-helix, structural PSI-2, protein structure initiative; HET: MSE; 2.02A {Enterococcus faecalis}
Probab=20.23 E-value=2.2e+02 Score=27.87 Aligned_cols=47 Identities=15% Similarity=0.191 Sum_probs=35.4
Q ss_pred HhcCCCeEeeehhhHHHHhh-----c--CCceEEEEEeCCCcEEEEEeeCCeeecc
Q 007563 261 RDLRFASAVVHQEGLAAVFG-----N--GLSTACVVNMGAQVTSVICVEDGVALPN 309 (598)
Q Consensus 261 e~~~f~~v~~~qesv~a~fg-----a--G~~sa~VVDiGa~~TsV~pV~dG~~l~~ 309 (598)
+.|++| |++.++.-++++| . +..+.++|-+|.. +-..-|.+|.++..
T Consensus 106 ~~~~~p-v~v~ND~~aaa~~e~~~g~~~~~~~~~~l~~GtG-iG~giv~~G~l~~G 159 (326)
T 2qm1_A 106 SALGIP-FALDNDANVAALGERWKGAGENNPDVIFITLGTG-VGGGIVAAGKLLHG 159 (326)
T ss_dssp HHHCSC-EEEEEHHHHHHHHHHHHSTTTTCSCEEEEEESSS-EEEEEEETTEECCC
T ss_pred HHhCCC-EEEecHHHHHHHHHHHhCCCCCCCcEEEEEECCc-eEEEEEECCEEeec
Confidence 445777 8888888888765 2 4568999999987 56777789988764
No 49
>2iir_A Acetate kinase; transferase; 3.30A {Thermotoga maritima}
Probab=20.04 E-value=32 Score=36.08 Aligned_cols=26 Identities=19% Similarity=0.270 Sum_probs=22.6
Q ss_pred eEEEEEeCCCcEEEEEeeCCeeeccCc
Q 007563 285 TACVVNMGAQVTSVICVEDGVALPNTE 311 (598)
Q Consensus 285 sa~VVDiGa~~TsV~pV~dG~~l~~s~ 311 (598)
.-+|..+|... |+|.|.+|.++..|-
T Consensus 202 ~lIv~HLGnGa-Si~Ai~~GksVDTsM 227 (403)
T 2iir_A 202 KIITCHIGNGA-SVAAVKYGKCVDTSM 227 (403)
T ss_dssp EEEEEEESSSE-EEEEEETTEEEEESC
T ss_pred CEEEEEeCCCe-eeeeeECCEEEEeCC
Confidence 68999999887 999999999997554
Done!