Query 007565
Match_columns 598
No_of_seqs 298 out of 1649
Neff 9.1
Searched_HMMs 46136
Date Thu Mar 28 12:20:35 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007565.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/007565hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0534 NorM Na+-driven multid 100.0 1.2E-52 2.7E-57 448.1 52.0 428 138-589 13-450 (455)
2 PRK10189 MATE family multidrug 100.0 5.4E-48 1.2E-52 416.1 54.6 437 137-595 24-475 (478)
3 PRK00187 multidrug efflux prot 100.0 2.2E-47 4.7E-52 411.1 51.4 435 137-594 5-458 (464)
4 PRK10367 DNA-damage-inducible 100.0 4.5E-46 9.8E-51 397.5 52.1 412 140-577 7-428 (441)
5 PRK09575 vmrA multidrug efflux 100.0 3.7E-46 8E-51 400.9 51.2 422 135-578 5-434 (453)
6 PRK01766 multidrug efflux prot 100.0 1.1E-44 2.4E-49 390.8 50.9 420 138-579 8-441 (456)
7 TIGR01695 mviN integral membra 100.0 2.3E-35 5E-40 322.6 51.3 413 144-581 2-429 (502)
8 TIGR02900 spore_V_B stage V sp 100.0 3.5E-33 7.5E-38 304.3 48.1 406 145-579 2-433 (488)
9 KOG1347 Uncharacterized membra 100.0 1.2E-34 2.5E-39 307.4 27.3 431 139-594 25-464 (473)
10 TIGR00797 matE putative efflux 100.0 1.1E-32 2.5E-37 286.1 41.2 334 150-505 1-341 (342)
11 PRK15099 O-antigen translocase 100.0 5.6E-32 1.2E-36 288.5 44.9 401 144-578 3-410 (416)
12 COG0728 MviN Uncharacterized m 100.0 4.2E-30 9E-35 270.3 50.8 423 141-581 6-438 (518)
13 PF03023 MVIN: MviN-like prote 100.0 1.1E-29 2.3E-34 271.8 47.7 389 172-582 5-405 (451)
14 PRK10459 colanic acid exporter 100.0 3.5E-25 7.6E-30 241.5 46.4 396 141-577 4-402 (492)
15 COG2244 RfbX Membrane protein 99.9 3.4E-22 7.4E-27 217.4 43.3 387 140-564 4-396 (480)
16 PRK10189 MATE family multidrug 99.8 3.3E-19 7.1E-24 192.6 27.8 203 376-578 25-235 (478)
17 PRK00187 multidrug efflux prot 99.8 6.6E-19 1.4E-23 190.0 27.6 205 374-579 4-214 (464)
18 COG0534 NorM Na+-driven multid 99.8 4.9E-19 1.1E-23 189.6 25.8 207 375-581 12-222 (455)
19 PRK10367 DNA-damage-inducible 99.8 2E-18 4.4E-23 184.7 27.0 204 376-579 5-211 (441)
20 PRK09575 vmrA multidrug efflux 99.8 3.2E-18 7E-23 184.3 26.6 205 376-580 8-215 (453)
21 PRK01766 multidrug efflux prot 99.8 7.1E-18 1.5E-22 182.2 27.4 206 374-579 6-217 (456)
22 TIGR01695 mviN integral membra 99.7 1.6E-15 3.4E-20 166.1 28.2 210 137-367 218-429 (502)
23 TIGR00797 matE putative efflux 99.7 3.8E-15 8.3E-20 154.6 26.9 192 388-579 1-196 (342)
24 PF01943 Polysacc_synt: Polysa 99.7 2.7E-14 5.9E-19 142.7 32.1 270 145-447 2-273 (273)
25 PF03023 MVIN: MviN-like prote 99.7 3.1E-14 6.8E-19 152.7 29.8 210 138-368 194-405 (451)
26 COG0728 MviN Uncharacterized m 99.6 7.4E-13 1.6E-17 140.3 34.1 227 139-388 229-457 (518)
27 PF01554 MatE: MatE; InterPro 99.6 4.6E-16 1E-20 143.1 7.3 160 388-547 1-161 (162)
28 TIGR02900 spore_V_B stage V sp 99.6 2.3E-13 4.9E-18 148.5 28.1 204 138-367 221-435 (488)
29 PF01554 MatE: MatE; InterPro 99.6 1.3E-15 2.8E-20 140.2 7.7 161 150-332 1-162 (162)
30 PRK10459 colanic acid exporter 99.6 5.1E-12 1.1E-16 138.0 33.7 202 138-366 203-405 (492)
31 PF13440 Polysacc_synt_3: Poly 99.5 4.5E-11 9.7E-16 118.1 30.5 246 160-445 2-250 (251)
32 PRK15099 O-antigen translocase 99.5 7.8E-12 1.7E-16 133.5 23.4 201 137-365 210-411 (416)
33 COG2244 RfbX Membrane protein 99.4 5.2E-11 1.1E-15 129.6 26.3 199 138-363 209-408 (480)
34 KOG2864 Nuclear division RFT1 99.0 5.4E-06 1.2E-10 84.5 34.5 414 139-579 5-448 (530)
35 KOG1347 Uncharacterized membra 98.9 7.1E-08 1.5E-12 103.2 18.7 202 376-578 24-228 (473)
36 PF04506 Rft-1: Rft protein; 98.9 3.2E-06 6.9E-11 91.9 30.2 281 299-579 152-469 (549)
37 PF07260 ANKH: Progressive ank 98.7 3.2E-05 7E-10 75.8 27.5 257 139-423 8-284 (345)
38 PF14667 Polysacc_synt_C: Poly 98.5 6.3E-06 1.4E-10 74.1 17.2 80 286-367 2-81 (146)
39 PF04506 Rft-1: Rft protein; 98.2 0.00018 3.9E-09 78.4 22.1 216 140-368 251-472 (549)
40 PF01943 Polysacc_synt: Polysa 98.1 0.001 2.2E-08 66.1 24.1 186 383-579 2-190 (273)
41 KOG2864 Nuclear division RFT1 98.0 0.0067 1.5E-07 62.5 25.7 210 140-369 237-452 (530)
42 PF13440 Polysacc_synt_3: Poly 97.9 0.0024 5.3E-08 62.6 22.5 160 404-577 9-170 (251)
43 PF14667 Polysacc_synt_C: Poly 97.9 7E-05 1.5E-09 67.2 9.0 80 502-581 2-81 (146)
44 COG4267 Predicted membrane pro 97.9 0.04 8.7E-07 55.5 32.9 339 187-569 69-435 (467)
45 PF07260 ANKH: Progressive ank 96.7 0.49 1.1E-05 47.1 20.9 156 376-537 7-167 (345)
46 COG4267 Predicted membrane pro 86.1 45 0.00097 34.4 20.2 134 427-574 71-205 (467)
47 PF05975 EcsB: Bacterial ABC t 64.6 1.9E+02 0.0041 30.4 14.7 39 450-488 88-126 (386)
48 COG0798 ACR3 Arsenite efflux p 63.9 1.8E+02 0.0038 29.8 25.9 95 238-335 9-103 (342)
49 PF05975 EcsB: Bacterial ABC t 45.8 3.8E+02 0.0082 28.1 15.1 35 234-268 90-124 (386)
50 PF04505 Dispanin: Interferon- 37.7 1.3E+02 0.0028 23.8 6.1 34 439-472 40-73 (82)
51 PF13347 MFS_2: MFS/sugar tran 31.0 6.4E+02 0.014 26.4 15.2 22 519-540 281-302 (428)
52 PF05977 MFS_3: Transmembrane 30.7 7.6E+02 0.016 27.2 37.2 48 144-191 12-61 (524)
53 PRK04288 antiholin-like protei 29.7 5.2E+02 0.011 25.0 16.1 142 141-334 86-228 (232)
54 COG2211 MelB Na+/melibiose sym 29.0 7.7E+02 0.017 26.7 27.6 30 141-170 11-40 (467)
55 PF04306 DUF456: Protein of un 27.9 4.2E+02 0.0092 23.3 10.2 20 378-397 102-121 (140)
56 KOG1289 Amino acid transporter 26.3 4.1E+02 0.0088 29.2 9.3 43 229-271 277-320 (550)
57 PTZ00370 STEVOR; Provisional 26.1 2.2E+02 0.0047 28.4 6.6 20 569-588 271-290 (296)
58 PF04172 LrgB: LrgB-like famil 24.6 6.2E+02 0.013 24.2 15.3 37 141-177 70-107 (215)
59 COG4536 CorB Putative Mg2+ and 23.1 5.7E+02 0.012 26.7 9.1 95 151-275 63-158 (423)
60 PF06808 DctM: DctM-like trans 23.0 9.2E+02 0.02 25.6 17.4 80 373-473 203-282 (416)
No 1
>COG0534 NorM Na+-driven multidrug efflux pump [Defense mechanisms]
Probab=100.00 E-value=1.2e-52 Score=448.13 Aligned_cols=428 Identities=28% Similarity=0.431 Sum_probs=397.5
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhccChhhhhhhhhHHHHHHHHHHHhhhhhhhHHHHHHHHHHHhhhhhh
Q 007565 138 QDAKNELIVLTLPAIAGQVIDPLAQLMETAYVGRLGSVELASAGVSISIFNIVSKLFNIPLLSVATSFVAEDIAKNLTKD 217 (598)
Q Consensus 138 ~~~~~~l~~~a~p~~~~~l~~~l~~~vd~~~vg~lg~~~laa~~~a~~i~~~~~~~~~~gl~~~~~~~va~~~~~~~~~~ 217 (598)
+...|+++++++|++++++++.+++++|++++||++++++|+.++++++.+++..+.. |+..+.+++++|++|++|
T Consensus 13 ~~~~k~l~~la~P~i~~~l~~~l~~~vD~~~vG~~~~~alaav~la~~i~~~~~~~~~-gl~~g~~~liaq~~Ga~~--- 88 (455)
T COG0534 13 KKILKLLLKLAIPIILGNLLQTLYGLVDTFMVGHLGAEALAAVGLANPIFFLIIAIFI-GLGTGTTVLVAQAIGAGD--- 88 (455)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHH-HHHHhHHHHHHHHHcCCc---
Confidence 3468999999999999999999999999999999999999999999999999987655 899999999999999887
Q ss_pred hhhccCCCCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHchHHHHhhcCCCCCccchhHHHHHHHHHHhhHHHHH
Q 007565 218 LAAGLEGNGKPPNGTTERKQLSSVSTALLLAVGIGIFEAAALSLASGPFLNLMGVPSASAMHGPAKKFLMLRALGSPAFV 297 (598)
Q Consensus 218 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~i~~~~~~~~~~~i~~~a~~yl~~~~~~~~~~~ 297 (598)
+++.++...++++++++++++.+++.+.+.++++.+++.++| +.+.+.+|+++..++.|+..
T Consensus 89 ----------------~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ll~~l~~~~~--v~~~a~~Yl~i~~~~~~~~~ 150 (455)
T COG0534 89 ----------------RKKAKRVLGQGLLLALLLGLLLAILLLFFAEPLLRLLGAPAE--VLELAAEYLRIILLGAPFAL 150 (455)
T ss_pred ----------------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHh--HHHHHHHHHHHHHHHHHHHH
Confidence 899999999999999999999999999999999999998777 89999999999999999999
Q ss_pred HHHHHHHHHhccCCChhHHHHHHHHHHHHHHHHHHHHhh-cC-CChhHHHHHHHHHHHHHHHHHHHHHhhccc--c-C--
Q 007565 298 VSLALQGIFRGFKDTKTPVLCLGIGNLLAVFLFPILIYF-CQ-LGMPGAAISTVVSQYIVAVTMIWFLNKKVV--L-M-- 370 (598)
Q Consensus 298 l~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~l~~lli~~-~~-~Gi~Gaa~at~is~~~~~~~~~~~l~~~~~--~-~-- 370 (598)
++..+.+++|+.||+|+|++.+++++++|+++|++|+++ ++ +|+.|+|+||++++++..+++++++.++++ . .
T Consensus 151 ~~~~~~~~lr~~G~~~~~m~~~~~~~~lNivln~llI~g~~g~lGv~GAA~AT~ia~~~~~~~~~~~~~~~~~~~~~~~~ 230 (455)
T COG0534 151 LSFVLSGILRGLGDTKTPMYILLLGNLLNIVLNYLLIFGLFGGLGVAGAALATVIARWIGALLLLIYLLRKKRLLSLFKK 230 (455)
T ss_pred HHHHHHHHHHhcCCCchhHHHHHHHHHHHHHhhHHHHHhccccccchhHHHHHHHHHHHHHHHHHHHHHhcchhhhhhhh
Confidence 999999999999999999999999999999999999998 57 999999999999999999999999977653 1 1
Q ss_pred -CCCccchhhhhhHhhcHHHHHHHHHHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 007565 371 -PPKMGALQFGDYVKSGGFLLGRTLAVLITMTLGTSMAARQGSDAMAAHQICMQVWLAVSLLTDALAASGQALIASYVSK 449 (598)
Q Consensus 371 -~~~~~~~~~~~~lk~~~p~~~~~~~~~i~~~i~~~i~~~~g~~~vaa~~i~~~i~~~~~~~~~~l~~a~~p~is~~~g~ 449 (598)
..+++++.+|++++.++|..++.+.....+.+.+.+++++|++.+|+|+++.++.++.++++.|++++.++++++++|+
T Consensus 231 ~~~~~~~~~~~~i~~lG~p~~~~~~~~~~~~~~~~~~~~~~G~~~lAa~~i~~~i~~~~~~~~~gi~~a~~~lvG~~~Ga 310 (455)
T COG0534 231 KLLKPDRKLLKEILRLGLPIFLESLSESLGFLLLTLFVARLGTVALAAYGIALRIASFIFMPPFGIAQAVTILVGQNLGA 310 (455)
T ss_pred hccCCCHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 2256777899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhccCCChHHHHHHHHHHHHHHhhhHHHHHHHHHHhHHhhcCchH
Q 007565 450 GDFKTVREITNFVLKIGVLTGVSLATILGLSFGSLAPLFTKDPKVLGIVGTGVLFVSASQPINALAFIFDGLHYGVSDFR 529 (598)
Q Consensus 450 ~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~l~~lf~~d~~v~~~~~~~l~i~~~~~~~~~~~~i~~~~l~~~g~~~ 529 (598)
+|++++++..+.++.+++.+++..+++++++++++.++|++|+|+.+.+..++++.++..++++++.+..+++||.||++
T Consensus 311 ~~~~~a~~~~~~~~~~~~~~~~~~~~i~~~f~~~i~~lF~~~~~v~~~~~~~l~i~~~~~~~~~~~~v~~g~lrg~g~~~ 390 (455)
T COG0534 311 GNYKRARRAARLALKLSLLIALLIALLLLLFREPIISLFTTDPEVIALAVILLLIAALFQPFDGIQFVLSGVLRGAGDAK 390 (455)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHH-HHHHHHHhhccC-CChHHHHHHHHHHHHHHHHHHHHHHHhcCCCcccccc
Q 007565 530 YAACSMMLVGA-MSSTFLLYAPRA-TGLPGVWAGLTLFMGLRTVAGFVRLLSKSGPWWFLHT 589 (598)
Q Consensus 530 ~~~~~~~~~~l-~~~~~~~~l~~~-~Gi~G~~~a~~i~~~v~~~~~~~~l~~~~~~w~~~~~ 589 (598)
.+++.+++... +..++.+++... +|..|+|+++.++..+..++..+++ ++.+|++...
T Consensus 391 ~~~~~~~~~~~~~~lp~~~~l~~~~~g~~Gvw~~~~~~~~~~~~~~~~~~--~~~~~~~~~~ 450 (455)
T COG0534 391 IPFIISLLSYWGFRLPLAYLLGFFFLGLAGVWIGFPLSLILRAILLLLRL--RRGRWRRKAV 450 (455)
T ss_pred HHHHHHHHHHHHHHHhHHHHHhhhcccchHHHHHHHHHHHHHHHHHHHHH--HHhhhhhhhh
Confidence 99988777543 345556666566 9999999999999999999999987 5555665433
No 2
>PRK10189 MATE family multidrug exporter; Provisional
Probab=100.00 E-value=5.4e-48 Score=416.14 Aligned_cols=437 Identities=22% Similarity=0.265 Sum_probs=387.3
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhccChhhhhhhhhHHHHHHHHHHHhhhhhhhHHHHHHHHHHHhhhhh
Q 007565 137 TQDAKNELIVLTLPAIAGQVIDPLAQLMETAYVGRLGSVELASAGVSISIFNIVSKLFNIPLLSVATSFVAEDIAKNLTK 216 (598)
Q Consensus 137 ~~~~~~~l~~~a~p~~~~~l~~~l~~~vd~~~vg~lg~~~laa~~~a~~i~~~~~~~~~~gl~~~~~~~va~~~~~~~~~ 216 (598)
.-+..|+++++++|.++++++..+++++|+.++|++|++++|+++++.++..+...+ ..|+..+.+++++|++|+++
T Consensus 24 ~~~~~k~il~la~P~~~~~~~~~~~~~vd~~~vg~lG~~alAA~~i~~~i~~~~~~~-~~gl~~g~~~lvsq~~Ga~~-- 100 (478)
T PRK10189 24 RVLFWREITPLAVPIFIENLCVLLMGVLSTFLVSWLGKEAMAGVGLADSFNMVIMAF-FAAIDLGTTVVVAFSLGKRD-- 100 (478)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhcCCC--
Confidence 345588999999999999999999999999999999999999999999998776654 45889999999999999987
Q ss_pred hhhhccCCCCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHchHHHHhhcCCCCCccchhHHHHHHHHHHhhHHHH
Q 007565 217 DLAAGLEGNGKPPNGTTERKQLSSVSTALLLAVGIGIFEAAALSLASGPFLNLMGVPSASAMHGPAKKFLMLRALGSPAF 296 (598)
Q Consensus 217 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~i~~~~~~~~~~~i~~~a~~yl~~~~~~~~~~ 296 (598)
+++.++.+++++.++++++++.+++.+++.++++.+++...|+++.+.+..|+++..++.|+.
T Consensus 101 -----------------~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~ll~l~~~~~~~~v~~~a~~Yl~i~~~~~~~~ 163 (478)
T PRK10189 101 -----------------RRRARAAARQSLVIMTLFAVLLAVLIHFFGEQIIDLVAGDATPEVKALALTYLELTVWSYPAA 163 (478)
T ss_pred -----------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHH
Confidence 899999999999999999999999999999999999953223348999999999999999999
Q ss_pred HHHHHHHHHHhccCCChhHHHHHHHHHHHHHHHHHHHHhhc----CCChhHHHHHHHHHHHHHHHHHHHHHhhc-cccCC
Q 007565 297 VVSLALQGIFRGFKDTKTPVLCLGIGNLLAVFLFPILIYFC----QLGMPGAAISTVVSQYIVAVTMIWFLNKK-VVLMP 371 (598)
Q Consensus 297 ~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~l~~lli~~~----~~Gi~Gaa~at~is~~~~~~~~~~~l~~~-~~~~~ 371 (598)
.+...+++++|+.||++.+++..++..++|++++++++++. ++|+.|+++|+.+++++..++.++++.++ +...+
T Consensus 164 ~~~~~~~~~lr~~G~~~~~~~i~~~~~~~ni~l~~~li~g~~~~~~lGv~Gaa~At~is~~~~~~~~~~~~~~~~~~~~~ 243 (478)
T PRK10189 164 AITLIGSGALRGAGNTKIPLLINGGMNILNIIISSILIYGLFSWQGLGFVGAGLGLTISRYIGAVAIIWVLMIGFNPALR 243 (478)
T ss_pred HHHHHHHHHHHhcCchHHhHHHHHHHHHHHHHHhHHHHhcCCCCCccchHHHHHHHHHHHHHHHHHHHHHHHhccCccce
Confidence 99999999999999999999999999999999999999863 79999999999999999988877766543 21111
Q ss_pred -------CCccchhhhhhHhhcHHHHHHHHHHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007565 372 -------PKMGALQFGDYVKSGGFLLGRTLAVLITMTLGTSMAARQGSDAMAAHQICMQVWLAVSLLTDALAASGQALIA 444 (598)
Q Consensus 372 -------~~~~~~~~~~~lk~~~p~~~~~~~~~i~~~i~~~i~~~~g~~~vaa~~i~~~i~~~~~~~~~~l~~a~~p~is 444 (598)
.+++...+|+++|.+.|..+..+...+...+.+.+++++|++++|+|+++.++..+.+++..|++++.+++++
T Consensus 244 ~~~~~~~~~~~~~~~~~il~iG~P~~~~~~~~~~~~~~~~~~~~~~G~~~~Aa~~I~~~i~~~~~~~~~gi~~A~~~lvg 323 (478)
T PRK10189 244 ISLKSYFKPLNFAIIWEVMGIGIPASIESVLFNGGKLLTQMFVAGMGTSVIAGNFIAFSIAALINLPGNALGSASTIITG 323 (478)
T ss_pred eeeccccccCCHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1134567899999999999999999999988889999999999999999999999999999999999999999
Q ss_pred HHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhccCCChHHHHHHHHHHHHHHhhhHHHHHHHHHHhHHhh
Q 007565 445 SYVSKGDFKTVREITNFVLKIGVLTGVSLATILGLSFGSLAPLFTKDPKVLGIVGTGVLFVSASQPINALAFIFDGLHYG 524 (598)
Q Consensus 445 ~~~g~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~l~~lf~~d~~v~~~~~~~l~i~~~~~~~~~~~~i~~~~l~~ 524 (598)
+++|++|++++|+..+.++.+++++++.++++++++++++.++|++|+|+.+.+..++++.++..++++++.+..+.++|
T Consensus 324 ~~~Ga~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~lFt~d~~v~~~~~~~l~~~~~~~~~~~~~~~~~g~lrg 403 (478)
T PRK10189 324 TRLGKGQIAQAERQLRHVFWLSTLGLTAIAWLSAPFAGLLASFYTQDPDVKHVVKILIWLNALFMPIWAASWVLPAGLKG 403 (478)
T ss_pred HHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCchHHHHHHHHHHH-HHHHHHHHh--hccCCChHHHHHHHHHHHHHHHHHHHHHHHhcCCCccccccChhhhh
Q 007565 525 VSDFRYAACSMMLVG-AMSSTFLLY--APRATGLPGVWAGLTLFMGLRTVAGFVRLLSKSGPWWFLHTDLEGAK 595 (598)
Q Consensus 525 ~g~~~~~~~~~~~~~-l~~~~~~~~--l~~~~Gi~G~~~a~~i~~~v~~~~~~~~l~~~~~~w~~~~~~~~~~~ 595 (598)
.||++.+++..++.. ++.+++.++ ...++|+.|+|++..+++++..++.++++ ++++|++..++.|+.|
T Consensus 404 ~G~t~~~~~i~~~~~~~v~ip~~~ll~~~~~~g~~Gvw~~~~~~~~~~~~~~~~r~--~~~~W~~~~~~~~~~~ 475 (478)
T PRK10189 404 ARDARYAMWVSMLGMWGCRVVAGYILGIMLGFGVVGVWMGMFLDWAVRGVLFYWRM--VSGRWLWKYPRPEPQK 475 (478)
T ss_pred CCCchHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHH--HcCccccCCCCCCccc
Confidence 999999998766543 233333333 23479999999999999999999888876 7778988555555444
No 3
>PRK00187 multidrug efflux protein NorA; Provisional
Probab=100.00 E-value=2.2e-47 Score=411.15 Aligned_cols=435 Identities=19% Similarity=0.207 Sum_probs=387.7
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhccChhhhhhhhhHHHHHHHHHHHhhhhhhhHHHHHHHHHHHhhhhh
Q 007565 137 TQDAKNELIVLTLPAIAGQVIDPLAQLMETAYVGRLGSVELASAGVSISIFNIVSKLFNIPLLSVATSFVAEDIAKNLTK 216 (598)
Q Consensus 137 ~~~~~~~l~~~a~p~~~~~l~~~l~~~vd~~~vg~lg~~~laa~~~a~~i~~~~~~~~~~gl~~~~~~~va~~~~~~~~~ 216 (598)
+++..|++++.++|.+++++++.+++++|+++++|+|++++|+++++.++.+++..+ ..|+..+.+++++|++|+++
T Consensus 5 ~~~~~k~il~~a~P~~~~~~~~~~~~~~d~~~v~~lg~~alAa~~i~~~i~~~~~~~-~~gl~~~~~~i~aq~~Ga~~-- 81 (464)
T PRK00187 5 PTTELKAILRLAGPLIASQLAHMLMVFTDTLMMGRLGPEALAGGGLGAASYSFVSIF-CVGVIAAVGTLVAIRHGAGD-- 81 (464)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhcCCC--
Confidence 445689999999999999999999999999999999999999999999998887755 46889999999999999987
Q ss_pred hhhhccCCCCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHchHHHHhhcCCCCCccchhHHHHHHHHHHhhHHHH
Q 007565 217 DLAAGLEGNGKPPNGTTERKQLSSVSTALLLAVGIGIFEAAALSLASGPFLNLMGVPSASAMHGPAKKFLMLRALGSPAF 296 (598)
Q Consensus 217 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~i~~~~~~~~~~~i~~~a~~yl~~~~~~~~~~ 296 (598)
+++.++.+.+++.+.++++++..++++ +.++++++++.++| +.+.+.+|+++..++.|+.
T Consensus 82 -----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~il~l~~~~~e--v~~~~~~Yl~i~~~~~~~~ 141 (464)
T PRK00187 82 -----------------IEGATRLAQAGLWLAWLLALVAALLLW-NLKPLLLLFGQAPQ--NVDAAMQFLHLLPFALPGY 141 (464)
T ss_pred -----------------hhhHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHcCCCHH--HHHHHHHHHHHHHHHHHHH
Confidence 899999999999999999998777655 57999999987766 9999999999999999999
Q ss_pred HHHHHHHHHHhccCCChhHHHHHHHHHHHHHHHHHHHHhhc----CCChhHHHHHHHHHHHHHHHHHHHHHhhcccc--C
Q 007565 297 VVSLALQGIFRGFKDTKTPVLCLGIGNLLAVFLFPILIYFC----QLGMPGAAISTVVSQYIVAVTMIWFLNKKVVL--M 370 (598)
Q Consensus 297 ~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~l~~lli~~~----~~Gi~Gaa~at~is~~~~~~~~~~~l~~~~~~--~ 370 (598)
.+...+++++|+.||++++++.+++..++|+++|++|++++ ++|+.|+|+||.+++++..+++++++++++.. .
T Consensus 142 ~l~~~~~~~l~~~g~~~~~~~~~~~~~~~ni~~~~~lIfg~~g~p~~Gv~Gaalat~i~~~~~~~~~~~~~~~~~~~~~~ 221 (464)
T PRK00187 142 LSFMALRGFTSALGRAGPVMVISLAGAVANLLLNYALIEGWFGLPKLGLMGIGLVTALVSNGMALALALYIRRHPAYAAY 221 (464)
T ss_pred HHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHcCCCCCccccccchHHHHHHHHHHHHHHHHHHHHhcchhhhh
Confidence 99999999999999999999999999999999999999863 58999999999999999888777777543211 1
Q ss_pred --C---CCccchhhhhhHhhcHHHHHHHHHHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007565 371 --P---PKMGALQFGDYVKSGGFLLGRTLAVLITMTLGTSMAARQGSDAMAAHQICMQVWLAVSLLTDALAASGQALIAS 445 (598)
Q Consensus 371 --~---~~~~~~~~~~~lk~~~p~~~~~~~~~i~~~i~~~i~~~~g~~~vaa~~i~~~i~~~~~~~~~~l~~a~~p~is~ 445 (598)
+ .+++...+|+++|.++|..+..+.....+.+++.+++++|++++|++++++++..+.+++..|++++..++++|
T Consensus 222 ~~~~~~~~~~~~~~k~il~lg~P~~~~~~~~~~~~~i~~~~i~~~G~~alAa~~i~~~i~~l~~~~~~gi~~a~~~lvgq 301 (464)
T PRK00187 222 PLRKGLSRPSRAALRELWRLGLPIGGTYAVEVGLFTFAALCMGALGSTQLAAHQIALQIVSVAFMVPVGLSYAVTMRVGQ 301 (464)
T ss_pred hhhccccCCCHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1 23445568999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhccCC--Ch---HHHHHHHHHHHHHHhhhHHHHHHHHHHh
Q 007565 446 YVSKGDFKTVREITNFVLKIGVLTGVSLATILGLSFGSLAPLFTK--DP---KVLGIVGTGVLFVSASQPINALAFIFDG 520 (598)
Q Consensus 446 ~~g~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~l~~lf~~--d~---~v~~~~~~~l~i~~~~~~~~~~~~i~~~ 520 (598)
++|++|++++++..+.++.++++++++.++++.++++++.++|++ |+ |+.+.+..++++.+++.++++++.++.+
T Consensus 302 ~~Ga~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~f~~~i~~~ft~~~~~~~~~v~~~~~~~l~i~~~~~~~~~~~~v~~~ 381 (464)
T PRK00187 302 HYGAGRLLEARRAGRVGIGFGAVVMLLFAGLFWLLPEAIIGLFLDRNDPAFAEIVQLAVSLLAVAAWFELFDGTQTIAMG 381 (464)
T ss_pred HHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 999999999999999999999999999999999999999999964 44 7888999999999999999999999999
Q ss_pred HHhhcCchHHHHHHHHHHH-HHHHHHHHhh--ccCCChHHHHHHHHHHHHHHHHHHHHHHHhcCCCccccccChhhh
Q 007565 521 LHYGVSDFRYAACSMMLVG-AMSSTFLLYA--PRATGLPGVWAGLTLFMGLRTVAGFVRLLSKSGPWWFLHTDLEGA 594 (598)
Q Consensus 521 ~l~~~g~~~~~~~~~~~~~-l~~~~~~~~l--~~~~Gi~G~~~a~~i~~~v~~~~~~~~l~~~~~~w~~~~~~~~~~ 594 (598)
+++|.||++.+++..++.. ++.+++.+++ .+++|+.|+|+++.++.++..+..+++++|++.+|.+....+|..
T Consensus 382 ~lrg~G~~~~~~~~~~~~~~~~~ipl~~ll~~~~~~g~~Gvw~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 458 (464)
T PRK00187 382 AIRGLKDARTTFLIGLACYWLVGAPLAWLLAFTLGWGAVGVWWGLALGLACAAVALTLAFEWKTARLLRKARASEAV 458 (464)
T ss_pred hHhccCccHHHHHHHHHHHHHHHHHHHHHHHhccCCCceeeHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHH
Confidence 9999999999999888765 4555544443 356899999999999999999999888888776676655555543
No 4
>PRK10367 DNA-damage-inducible SOS response protein; Provisional
Probab=100.00 E-value=4.5e-46 Score=397.48 Aligned_cols=412 Identities=22% Similarity=0.297 Sum_probs=362.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhcc-ChhhhhhhhhHHHHHHHHHHHhhhhhhhHHHHHHHHHHHhhhhhhh
Q 007565 140 AKNELIVLTLPAIAGQVIDPLAQLMETAYVGRL-GSVELASAGVSISIFNIVSKLFNIPLLSVATSFVAEDIAKNLTKDL 218 (598)
Q Consensus 140 ~~~~l~~~a~p~~~~~l~~~l~~~vd~~~vg~l-g~~~laa~~~a~~i~~~~~~~~~~gl~~~~~~~va~~~~~~~~~~~ 218 (598)
..|+++++++|+++++++..+++++|++++||+ |++++|+++++.++.+.+..+ ..|+..+.+++++|++|++|
T Consensus 7 ~~k~il~la~P~~~~~~~~~~~~~vd~~~vg~l~g~~alAa~~l~~~i~~~~~~~-~~~~~~g~~~lvsq~~Ga~~---- 81 (441)
T PRK10367 7 SDKALWRLALPMIFSNITVPLLGLVDTAVIGHLDSPVYLGGVAVGATATSFLFML-LLFLRMSTTGLTAQAFGAKN---- 81 (441)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhCCCC----
Confidence 378999999999999999999999999999997 677899999999998887655 44788899999999999987
Q ss_pred hhccCCCCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHchHHHHhhcCCCCCccchhHHHHHHHHHHhhHHHHHH
Q 007565 219 AAGLEGNGKPPNGTTERKQLSSVSTALLLAVGIGIFEAAALSLASGPFLNLMGVPSASAMHGPAKKFLMLRALGSPAFVV 298 (598)
Q Consensus 219 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~i~~~~~~~~~~~i~~~a~~yl~~~~~~~~~~~l 298 (598)
+++.++..++++.++++++++..++...+.++++++++.+++ +.+.+.+|+++..++.|+..+
T Consensus 82 ---------------~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ll~~~g~~~~--v~~~a~~Yl~i~~~~~~~~~~ 144 (441)
T PRK10367 82 ---------------PQALARALVQPLLLALGAGALIALLRTPLIDLALHIVGGSEA--VLEQARRFLEIRWLSAPASLA 144 (441)
T ss_pred ---------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHH--HHHHHHHHHHHHHHHHHHHHH
Confidence 889999999999999999999888888889999999988877 899999999999999999999
Q ss_pred HHHHHHHHhccCCChhHHHHHHHHHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHHHHHHHHhhccc--cCCC---C
Q 007565 299 SLALQGIFRGFKDTKTPVLCLGIGNLLAVFLFPILIYFCQLGMPGAAISTVVSQYIVAVTMIWFLNKKVV--LMPP---K 373 (598)
Q Consensus 299 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~l~~lli~~~~~Gi~Gaa~at~is~~~~~~~~~~~l~~~~~--~~~~---~ 373 (598)
...+++++|+.||++.|++..++++++|+++|++|++++++|+.|+++||.+++++.+++.+++++++.+ ..+. +
T Consensus 145 ~~~~~~~lr~~G~~~~~~~~~ii~~~vni~l~~~lI~~~~lGv~Gaa~At~is~~~~~i~~~~~~~~~~~~~~~~~~~~~ 224 (441)
T PRK10367 145 NLVLLGWLLGVQYARAPVILLVVGNILNIVLDLWLVMGLHMNVQGAALATVIAEYATLLIGLLMVRKVLKLRGISLEMLK 224 (441)
T ss_pred HHHHHHHHHHcccchHHHHHHHHHHHHHHHHHHHHHHHcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccHHHhh
Confidence 9999999999999999999999999999999999999989999999999999999999888877765321 1111 1
Q ss_pred cc-chhhhhhHhhcHHHHHHHHHHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCh
Q 007565 374 MG-ALQFGDYVKSGGFLLGRTLAVLITMTLGTSMAARQGSDAMAAHQICMQVWLAVSLLTDALAASGQALIASYVSKGDF 452 (598)
Q Consensus 374 ~~-~~~~~~~lk~~~p~~~~~~~~~i~~~i~~~i~~~~g~~~vaa~~i~~~i~~~~~~~~~~l~~a~~p~is~~~g~~~~ 452 (598)
.+ +..+|+++|++.|..++.....+.+.+.+.+++++|++++|+|+++.++.++.++++.|++++.+|+++|++|++|+
T Consensus 225 ~~~~~~~~~il~ig~P~~~~~~~~~~~~~~~~~~~~~~G~~alAa~~I~~~i~~~~~~~~~gl~~a~~~lvg~~~Ga~~~ 304 (441)
T PRK10367 225 TAWRGNFRRLLALNRDIMLRSLLLQLCFGAITVLGARLGSDIIAVNAVLMTLLTFTAYALDGFAYAVEAHSGQAYGARDG 304 (441)
T ss_pred hhhHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCH
Confidence 12 23578999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhccCCChHHHHHHHHHHHHHHhhhHHHHHHHHHHhHHhhcC---chH
Q 007565 453 KTVREITNFVLKIGVLTGVSLATILGLSFGSLAPLFTKDPKVLGIVGTGVLFVSASQPINALAFIFDGLHYGVS---DFR 529 (598)
Q Consensus 453 ~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~l~~lf~~d~~v~~~~~~~l~i~~~~~~~~~~~~i~~~~l~~~g---~~~ 529 (598)
+++|+..+.+++++++++++.+++++.+++++..+|++|+|+.+.+..++++.++..+......+.+++++|.+ |++
T Consensus 305 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~lFt~d~~v~~~~~~~l~i~~~~~~~~~~~~~~~~~~~g~lrg~dt~ 384 (441)
T PRK10367 305 SQLLDVWRAACRQSGIVALLFSLVYALAGEHIIALLTSLPQIQQLADRYLIWQVILPLVGVWCYLLDGMFIGATRAAEMR 384 (441)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCccchHHHH
Confidence 99999999999999999999999999999999999999999999999999998876433324444444444444 599
Q ss_pred HHHHHHHHHHHHHHHHHHhhccCCChHHHHHHHHHHHHHHHHHHHHHH
Q 007565 530 YAACSMMLVGAMSSTFLLYAPRATGLPGVWAGLTLFMGLRTVAGFVRL 577 (598)
Q Consensus 530 ~~~~~~~~~~l~~~~~~~~l~~~~Gi~G~~~a~~i~~~v~~~~~~~~l 577 (598)
.+++.+.+...+ .++..+.+|+.|+|++..++.++..++..+++
T Consensus 385 ~~~~~~~~~~~~----~~~~~~~~g~~Gvw~a~~~~~~~~~i~~~~~~ 428 (441)
T PRK10367 385 NSMAVAAAGFAL----TLLTLPWLGNHGLWLALTVFLALRGLSLAAIW 428 (441)
T ss_pred HHHHHHHHHHHH----HHHHHHHcCchHHHHHHHHHHHHHHHHHHHHH
Confidence 998877765332 11122468999999999999999999988876
No 5
>PRK09575 vmrA multidrug efflux pump VmrA; Reviewed
Probab=100.00 E-value=3.7e-46 Score=400.88 Aligned_cols=422 Identities=18% Similarity=0.225 Sum_probs=384.2
Q ss_pred cCCchHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhc-cChhhhhhhhhHHHHHHHHHHHhhhhhhhHHHHHHHHHHHhh
Q 007565 135 SHTQDAKNELIVLTLPAIAGQVIDPLAQLMETAYVGR-LGSVELASAGVSISIFNIVSKLFNIPLLSVATSFVAEDIAKN 213 (598)
Q Consensus 135 ~~~~~~~~~l~~~a~p~~~~~l~~~l~~~vd~~~vg~-lg~~~laa~~~a~~i~~~~~~~~~~gl~~~~~~~va~~~~~~ 213 (598)
+.+++..|++++.++|+++++++..+++++|+.++|+ +|+++++++++++++.++...+ ..++..+.+++++|++|++
T Consensus 5 ~~~~~~~k~i~~l~~P~~~~~l~~~l~~~~d~~~lg~~~g~~~laa~~~~~~~~~~~~~~-~~~~~~g~~~lvsq~~Ga~ 83 (453)
T PRK09575 5 MMNQSIYRTFWRYTIPSIAAMLVNGLYQIVDGIFIGHYVGAEGLAGINMAWPVIGIILGI-GLMVGMGTGSLLSIKRGEG 83 (453)
T ss_pred hccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHH-HHHHhccHHHHHHHHhcCC
Confidence 4456778999999999999999999999999999999 5999999999999998877754 4467788889999999988
Q ss_pred hhhhhhhccCCCCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHchHHHHhhcCCCCCccchhHHHHHHHHHHhhH
Q 007565 214 LTKDLAAGLEGNGKPPNGTTERKQLSSVSTALLLAVGIGIFEAAALSLASGPFLNLMGVPSASAMHGPAKKFLMLRALGS 293 (598)
Q Consensus 214 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~i~~~~~~~~~~~i~~~a~~yl~~~~~~~ 293 (598)
+ +|+.++.+.+++.++++++++.++++++++++++.+++.+++ +.+.+.+|+++..++.
T Consensus 84 ~-------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~l~~~~~~--~~~~~~~yl~i~~~~~ 142 (453)
T PRK09575 84 D-------------------LEKAKRILTTGLLLLLLLGPIVSVILFLFADDFLRAQGAEGR--TLELALQYIQVLIWGC 142 (453)
T ss_pred C-------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChh--hHHHHHHHHHHHHHHH
Confidence 7 889999999999999999999999999999999999987766 8999999999999999
Q ss_pred HHHHHHHHHHHHHhccCCChhHHHHHHHHHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHHHHHHHHhhccccCC--
Q 007565 294 PAFVVSLALQGIFRGFKDTKTPVLCLGIGNLLAVFLFPILIYFCQLGMPGAAISTVVSQYIVAVTMIWFLNKKVVLMP-- 371 (598)
Q Consensus 294 ~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~l~~lli~~~~~Gi~Gaa~at~is~~~~~~~~~~~l~~~~~~~~-- 371 (598)
|+..+...+..++|+.|+++.+++.++++.++|+++|++|++.+++|+.|+++||++++++..++.++++++++...+
T Consensus 143 ~~~~l~~~~~~~l~~~g~~~~~~~~~~~~~~~ni~l~~~li~~~~~Gi~Gaa~At~is~~~~~~~~~~~~~~~~~~~~~~ 222 (453)
T PRK09575 143 LFTLGAIALPFLLRNDESPNLATGLMVIGALINIVLDYLFIGWLDWGLTGAAIATALAQLVVTVLGLGYFFSSRANIRLT 222 (453)
T ss_pred HHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHhhHHHHHhCCchhHHHHHHHHHHHHHHHHHHHHHHHCCCceeEEe
Confidence 999999999999999999999999999999999999999999889999999999999999999998887765433222
Q ss_pred ---CCccchhhhhhHhhcHHHHHHHHHHHHHHHHHHHHHHhcCh-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 007565 372 ---PKMGALQFGDYVKSGGFLLGRTLAVLITMTLGTSMAARQGS-DAMAAHQICMQVWLAVSLLTDALAASGQALIASYV 447 (598)
Q Consensus 372 ---~~~~~~~~~~~lk~~~p~~~~~~~~~i~~~i~~~i~~~~g~-~~vaa~~i~~~i~~~~~~~~~~l~~a~~p~is~~~ 447 (598)
.++++..+|++++.+.|..++.....+...+.+.+++++|+ +++|+|+++.++..+.+++..|++++..|++|+++
T Consensus 223 ~~~~~~~~~~~~~il~ig~P~~~~~~~~~~~~~~~~~~~~~~g~~~~lAa~~i~~~i~~~~~~~~~gi~~a~~~lvg~~~ 302 (453)
T PRK09575 223 LKELRFNWSLAPKIVLLGSSSFFMYLYGSFVVALHNRLFMEYGSALTVGAYAIVGYLMVLYYLVAEGIAEGMQPPVSYYF 302 (453)
T ss_pred eccCCcCHHHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHh
Confidence 23344567899999999999999999999999999999985 68999999999999999999999999999999999
Q ss_pred cCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhccCC-ChHHHHHHHHHHHHHHhhhHHHHHHHHHHhHHhhcC
Q 007565 448 SKGDFKTVREITNFVLKIGVLTGVSLATILGLSFGSLAPLFTK-DPKVLGIVGTGVLFVSASQPINALAFIFDGLHYGVS 526 (598)
Q Consensus 448 g~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~l~~lf~~-d~~v~~~~~~~l~i~~~~~~~~~~~~i~~~~l~~~g 526 (598)
|++|++++++..+.++.+++..+++.++++..+++++.++|++ |+|+.+.+..++++.+++.+++++..+..+.++|.|
T Consensus 303 Ga~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~i~~lf~~~~~~v~~~~~~~l~i~~~~~~~~~~~~~~~~~~~~~g 382 (453)
T PRK09575 303 GARQYDNIKKLLKLAMKVTVLAGIAWVLLLNLFPETMIALFNSGDSELIAETIVGIRLHLFAMFLDGFLVLASAYFMAVN 382 (453)
T ss_pred cCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhHcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 9999999999999999999999999999999999999999995 789999999999999999999999999999999999
Q ss_pred chHHHHHHHHHHHHHHHHHHHhhccCCChHHHHHHHHHHHHHHHHHHHHHHH
Q 007565 527 DFRYAACSMMLVGAMSSTFLLYAPRATGLPGVWAGLTLFMGLRTVAGFVRLL 578 (598)
Q Consensus 527 ~~~~~~~~~~~~~l~~~~~~~~l~~~~Gi~G~~~a~~i~~~v~~~~~~~~l~ 578 (598)
|++.+++.++...++.+++.+.+++.+|+.|+|+++.++.++..++.+++++
T Consensus 383 ~~~~~~~~~~~~~~v~ip~~~ll~~~~G~~Gvw~a~~~~~~~~~~~~~~~~~ 434 (453)
T PRK09575 383 QGGKALFISIGNMLIQLPFLFILPKWLGVDGVWLAMPLSNIALSLVVAPMLW 434 (453)
T ss_pred CcHHHHHHHHHhHHHHHHHHHHHHHHHCcchHhhHHHHHHHHHHHHHHHHHH
Confidence 9999998887665666777777766689999999999999998887777664
No 6
>PRK01766 multidrug efflux protein; Reviewed
Probab=100.00 E-value=1.1e-44 Score=390.81 Aligned_cols=420 Identities=21% Similarity=0.257 Sum_probs=379.9
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhccChhhhhhhhhHHHHHHHHHHHhhhhhhhHHHHHHHHHHHhhhhhh
Q 007565 138 QDAKNELIVLTLPAIAGQVIDPLAQLMETAYVGRLGSVELASAGVSISIFNIVSKLFNIPLLSVATSFVAEDIAKNLTKD 217 (598)
Q Consensus 138 ~~~~~~l~~~a~p~~~~~l~~~l~~~vd~~~vg~lg~~~laa~~~a~~i~~~~~~~~~~gl~~~~~~~va~~~~~~~~~~ 217 (598)
++..|++++.++|.+++++...+++++|..+++++|++++++++++.++...+..+ ..|+..+..+.++|++|+++
T Consensus 8 ~~~~~~il~~~~P~~~~~~~~~~~~~~d~~~i~~~g~~~laa~~~~~~~~~~~~~~-~~g~~~a~~~~vs~~~g~~~--- 83 (456)
T PRK01766 8 KSEARQLLALALPILLAQVAQTAMGFVDTVMAGGVSATDLAAVAIGTSIWLPVILF-GHGLLLALTPIVAQLNGAGR--- 83 (456)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhcCCC---
Confidence 45589999999999999999999999999999999999999999998886665543 45788899999999999887
Q ss_pred hhhccCCCCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHchHHHHhhcCCCCCccchhHHHHHHHHHHhhHHHHH
Q 007565 218 LAAGLEGNGKPPNGTTERKQLSSVSTALLLAVGIGIFEAAALSLASGPFLNLMGVPSASAMHGPAKKFLMLRALGSPAFV 297 (598)
Q Consensus 218 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~i~~~~~~~~~~~i~~~a~~yl~~~~~~~~~~~ 297 (598)
+++.++.+++++.++++++++.+++++++++++..+++.+++ +.+.+..|+++..++.|+..
T Consensus 84 ----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~--~~~~~~~yl~i~~~~~~~~~ 145 (456)
T PRK01766 84 ----------------RERIAHQVRQGLWLALFLSVLIMLVLYNAVPPILNMMNLEPE--VADIAVGYLHALLWGIPAYL 145 (456)
T ss_pred ----------------hHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHcCCCHH--HHHHHHHHHHHHHHHHHHHH
Confidence 788999999999999999999999999999999999987765 88999999999999999999
Q ss_pred HHHHHHHHHhccCCChhHHHHHHHHHHHHHHHHHHHHhh----cCCChhHHHHHHHHHHHHHHHHHHHHHhhcccc----
Q 007565 298 VSLALQGIFRGFKDTKTPVLCLGIGNLLAVFLFPILIYF----CQLGMPGAAISTVVSQYIVAVTMIWFLNKKVVL---- 369 (598)
Q Consensus 298 l~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~l~~lli~~----~~~Gi~Gaa~at~is~~~~~~~~~~~l~~~~~~---- 369 (598)
+...+++++|+.|+++++++.++++.++|++++++++++ +.+|+.|+++||.+++++..++.+++++++++.
T Consensus 146 ~~~~~~~~l~~~g~~~~~~~~~~i~~ivni~l~~~li~~~~~~~~~Gv~Gaa~at~is~~~~~~~~~~~~~~~~~~~~~~ 225 (456)
T PRK01766 146 LYQVLRSFIDGLGKTKPTMVIGFLGLLINIPLNYIFIYGKFGFPELGGVGCGVATAIVYWVMFLAMLIYIKRARRFRDFR 225 (456)
T ss_pred HHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHHcCCCCCcccccccHHHHHHHHHHHHHHHHHHHHHhChhhhHHH
Confidence 999999999999999999999999999999999999974 368999999999999999999998888654321
Q ss_pred C---CCCccchhhhhhHhhcHHHHHHHHHHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007565 370 M---PPKMGALQFGDYVKSGGFLLGRTLAVLITMTLGTSMAARQGSDAMAAHQICMQVWLAVSLLTDALAASGQALIASY 446 (598)
Q Consensus 370 ~---~~~~~~~~~~~~lk~~~p~~~~~~~~~i~~~i~~~i~~~~g~~~vaa~~i~~~i~~~~~~~~~~l~~a~~p~is~~ 446 (598)
. +.+.++..+|++++.++|..++.......+.++..+++++|++++|+++++.++.++..+++.|++.+..++++++
T Consensus 226 ~~~~~~~~~~~~~k~il~l~~P~~~~~~~~~~~~~~~~~~~~~~G~~~lAa~~i~~~i~~~~~~~~~gl~~a~~~~v~~~ 305 (456)
T PRK01766 226 LFKGLYKPDWAVIKRLLKLGLPIGLAIFFEVSLFAVVTLLVSPLGTVTVAAHQIALNFSSLLFMLPLSLAMALTIRVGFE 305 (456)
T ss_pred hhccccCCCHHHHHHHHHccchHHHHHHHHHHHHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1 1234556789999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhccCCChHHHHHHHHHHHHHHhhhHHHHHHHHHHhHHhhcC
Q 007565 447 VSKGDFKTVREITNFVLKIGVLTGVSLATILGLSFGSLAPLFTKDPKVLGIVGTGVLFVSASQPINALAFIFDGLHYGVS 526 (598)
Q Consensus 447 ~g~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~l~~lf~~d~~v~~~~~~~l~i~~~~~~~~~~~~i~~~~l~~~g 526 (598)
+|++|++++++..+.++.+++.++++.+++++.+++++.++|++|+|+.+.+..++++..+..++++++.+..++++|.|
T Consensus 306 ~Ga~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~lf~~d~~v~~~~~~~l~~~~~~~~~~~~~~~~~~~l~g~g 385 (456)
T PRK01766 306 LGAGRTLDARQYAYIGLAVGLGMALLTAIFLVLFREQIALLYTDDPEVVALASHLLLFAALFQFSDAIQVIGSGALRGYK 385 (456)
T ss_pred hcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhccC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chHHHHHHHHHHH-HHHHHHHHh--hccCCChHHHHHHHHHHHHHHHHHHHHHHHh
Q 007565 527 DFRYAACSMMLVG-AMSSTFLLY--APRATGLPGVWAGLTLFMGLRTVAGFVRLLS 579 (598)
Q Consensus 527 ~~~~~~~~~~~~~-l~~~~~~~~--l~~~~Gi~G~~~a~~i~~~v~~~~~~~~l~~ 579 (598)
|++.+++..++.. ++.+++.++ ..+.+|+.|+|+++.++.++.+++.++++++
T Consensus 386 ~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~G~~G~~~~~~~~~~~~~~~~~~~~~~ 441 (456)
T PRK01766 386 DTRVIFFITFIAYWVLGLPLGYILALTDPMGPFGFWIGLIIGLTAAAILLLLRLRK 441 (456)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHhccCCCceehHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999888755 344444443 3357999999999999999999988888633
No 7
>TIGR01695 mviN integral membrane protein MviN. This model represents MviN, a family of integral membrane proteins predicted to have ten or more transmembrane regions. Although frequently listed as a virulence protein, it is not restricted to pathogens and it is an essential protein in Sinorhizobium meliloti. In a number of species its gene is adjacent to that of the uridylyltransferase GlnD, the signal-transducing enzyme that performs the key modification to the nitrogen regulatory protein PII.
Probab=100.00 E-value=2.3e-35 Score=322.59 Aligned_cols=413 Identities=14% Similarity=0.094 Sum_probs=349.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHhc-cChhhh-hhhhhHHHHHHHHHHHhh-hhhhhHHHHHHHHHHHhhhhhhhhh
Q 007565 144 LIVLTLPAIAGQVIDPLAQLMETAYVGR-LGSVEL-ASAGVSISIFNIVSKLFN-IPLLSVATSFVAEDIAKNLTKDLAA 220 (598)
Q Consensus 144 l~~~a~p~~~~~l~~~l~~~vd~~~vg~-lg~~~l-aa~~~a~~i~~~~~~~~~-~gl~~~~~~~va~~~~~~~~~~~~~ 220 (598)
++|.+.-.+++++++.+++++|.+++++ +|++++ ++++++.++++.+..+.. .|+..+ ++++..+++++
T Consensus 2 ~~k~~~i~~~~~~~~~~~~~~~~~~~a~~lG~~~~~~~~~~~~~i~~~~~~~~~~~g~~~a---~i~~~~~~~~~----- 73 (502)
T TIGR01695 2 LLKSTLIVSLGTLFSRITGFVRDAIIASAFGAGLTADAFNVAFVIPNFFRRLFAEGAFNSA---FVPVFTKAKKK----- 73 (502)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChHhhHHHHHHHHHHHHHHHHHhhHHHHH---HHHHHHHHHhh-----
Confidence 5788899999999999999999999999 999999 899999999988766544 334333 44444443331
Q ss_pred ccCCCCCCCCCcchHHHHHHHHHHHHHHH-HHHHHHHHHHHHchHHHHhhcC--CCCCccchhHHHHHHHHHHhhHHHHH
Q 007565 221 GLEGNGKPPNGTTERKQLSSVSTALLLAV-GIGIFEAAALSLASGPFLNLMG--VPSASAMHGPAKKFLMLRALGSPAFV 297 (598)
Q Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~i~~~~~--~~~~~~i~~~a~~yl~~~~~~~~~~~ 297 (598)
+++.++.+.+++.... +.+++.+++.+++++++..+++ .+++ ..+.+..|++++.++.++..
T Consensus 74 -------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~g~~~~--~~~~~~~~l~i~~~~~~~~~ 138 (502)
T TIGR01695 74 -------------EKEARRAFANTVTTLLILSLLLVVLIGIFFAPFVISLLAPGFADE--TRSLAVSLTRIMFPYLLLIS 138 (502)
T ss_pred -------------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcc--HHHHHHHHHHHHHHHHHHHH
Confidence 1344545555555444 4444556777888999998884 3433 67889999999999999999
Q ss_pred HHHHHHHHHhccCCChhHHHHHHHHHHHHHHHHHHHHhhcCCChhHHH--HHHHHHHHHHHHHHHHHHhhccccCCCC--
Q 007565 298 VSLALQGIFRGFKDTKTPVLCLGIGNLLAVFLFPILIYFCQLGMPGAA--ISTVVSQYIVAVTMIWFLNKKVVLMPPK-- 373 (598)
Q Consensus 298 l~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~l~~lli~~~~~Gi~Gaa--~at~is~~~~~~~~~~~l~~~~~~~~~~-- 373 (598)
+....++++|+.+|++.+++.+++.++++++..+++. +++|+.|++ +++++++.+..++.+++++|++.+.+++
T Consensus 139 ~~~~~~~~l~~~~~~~~~~~~~i~~~i~~i~~~~~~~--~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 216 (502)
T TIGR01695 139 LAAVFGGILNARKRFFIPSFSPILFNIGVILSLLFFD--WNYGQYSLALAIGVLIGGVAQLLIQLPFLRKAGFLLKPRFN 216 (502)
T ss_pred HHHHHHHHHhccCeeHHHHHHHHHHHHHHHHHHHHHH--cccchHHHHHHHHHHHHHHHHHHHHHHHHHHCCCcccCcCC
Confidence 9999999999999999999999999988877544443 578999998 9999999999998888776654333333
Q ss_pred ccchhhhhhHhhcHHHHHHHHHHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhcCCCh
Q 007565 374 MGALQFGDYVKSGGFLLGRTLAVLITMTLGTSMAARQGSDAMAAHQICMQVWLAVSL-LTDALAASGQALIASYVSKGDF 452 (598)
Q Consensus 374 ~~~~~~~~~lk~~~p~~~~~~~~~i~~~i~~~i~~~~g~~~vaa~~i~~~i~~~~~~-~~~~l~~a~~p~is~~~g~~~~ 452 (598)
+++..+|++++++.|..++.+...+...+++.+.+.+|++++++|+.+.++.+++.. +..+++++..|.+++++|++|+
T Consensus 217 ~~~~~~k~~l~~~~p~~~~~~~~~~~~~id~~~~~~~~~~~v~~~~~a~~l~~~~~~~~~~~i~~~~~P~~s~~~~~~~~ 296 (502)
T TIGR01695 217 FRDPGLKRFLKLFLPTTLGSSASQITLLINTALASFLEIGSVSALYYANRIYQLPLGIFGISLSTVLLPKLSRHASEGNW 296 (502)
T ss_pred CCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCH
Confidence 455678999999999999999999999999988888899999999999999988765 5788999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhccCC----ChHHHHHHHHHHHHHHhhhHHHHHHHHHHhHHhhcCch
Q 007565 453 KTVREITNFVLKIGVLTGVSLATILGLSFGSLAPLFTK----DPKVLGIVGTGVLFVSASQPINALAFIFDGLHYGVSDF 528 (598)
Q Consensus 453 ~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~l~~lf~~----d~~v~~~~~~~l~i~~~~~~~~~~~~i~~~~l~~~g~~ 528 (598)
+++++..++++++...+++|.++++.++++++..+|.+ |+|.+..+..++.+++++.++.+++.++.+.+++.||+
T Consensus 297 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ii~l~~~~~~f~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~a~g~~ 376 (502)
T TIGR01695 297 NELRDLLNQGIRLSLLLTIPSSFGLLILSIPIVSLLFERGAFSEEDTVMTATILAAYGLGLIFYSLQKVLLRAFYARKDT 376 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhccCC
Confidence 99999999999999999999999999999999999976 56788899999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhccCCChHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 007565 529 RYAACSMMLVGAMSSTFLLYAPRATGLPGVWAGLTLFMGLRTVAGFVRLLSKS 581 (598)
Q Consensus 529 ~~~~~~~~~~~l~~~~~~~~l~~~~Gi~G~~~a~~i~~~v~~~~~~~~l~~~~ 581 (598)
|.+++..+...++++++++++.+.+|+.|+|+++.+++.+..++..++++++.
T Consensus 377 ~~~~~~~~~~~~i~i~l~~~l~~~~G~~G~~~a~~i~~~~~~~~~~~~~~~~~ 429 (502)
T TIGR01695 377 RTPFINSVISVVLNALLSLLLIFPLGLVGIALATSAASMVSSVLLYLMLNRRL 429 (502)
T ss_pred ccCHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 99999998888888888788878899999999999999999888887775443
No 8
>TIGR02900 spore_V_B stage V sporulation protein B. SpoVB is the stage V sporulation protein B of the bacterial endopore formation program in Bacillus subtilis and various other Firmcutes. It is nearly universal among endospore-formers. Paralogs with rather high sequence similarity to SpoVB exist, including YkvU in B. subtilis and a number of proteins in the genus Clostridium. Member sequences for the seed alignment were chosen to select those proteins, no more than one to a genome, closest to B. subtilis SpoVB in a neighbor joining tree.
Probab=100.00 E-value=3.5e-33 Score=304.33 Aligned_cols=406 Identities=17% Similarity=0.212 Sum_probs=347.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHhc-cChhhhhhhhhHHHHHHHHHHHhhhhhhhHHHHHHHHHHHhhhhhhhhhccC
Q 007565 145 IVLTLPAIAGQVIDPLAQLMETAYVGR-LGSVELASAGVSISIFNIVSKLFNIPLLSVATSFVAEDIAKNLTKDLAAGLE 223 (598)
Q Consensus 145 ~~~a~p~~~~~l~~~l~~~vd~~~vg~-lg~~~laa~~~a~~i~~~~~~~~~~gl~~~~~~~va~~~~~~~~~~~~~~~~ 223 (598)
.+.+.|.++++++..+.+++|..+++| +|++++|+++.+.++.+++..+...|+..+..+.++|+.++++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~i~~~~l~r~Lg~~~~G~~~~~~~~~~~~~~~~~~Gl~~a~~~~is~~~~~~~--------- 72 (488)
T TIGR02900 2 LKGTFILTIANLITRILGFIFRIVLSRILGAEGVGLYGMAMPIYFLFITLTTGGLPVAISKFVAEASAKND--------- 72 (488)
T ss_pred hHhHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHhhHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHhccc---------
Confidence 467899999999999999999999999 8999999999999999998888788899999999999887765
Q ss_pred CCCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHchHHHHhhcCCCCCccchhHHHHHHHHHHhhHHHHHHHHHHH
Q 007565 224 GNGKPPNGTTERKQLSSVSTALLLAVGIGIFEAAALSLASGPFLNLMGVPSASAMHGPAKKFLMLRALGSPAFVVSLALQ 303 (598)
Q Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~i~~~~~~~~~~~i~~~a~~yl~~~~~~~~~~~l~~~~~ 303 (598)
+++.++.+.+++.+.++++++.+++++++++++...++.+++ ...+++++.+..++..+....+
T Consensus 73 ----------~~~~~~~~~~~~~l~l~~~~~~~~l~~~~~~~i~~~~~~~~~------~~~~l~~~~~~~~~~~~~~~~~ 136 (488)
T TIGR02900 73 ----------RKNIKKILKVSLIFTLIWSLIVTAIVFLLSPFIASTLLKDER------SLYSLLVICPAMPFIALSSVLK 136 (488)
T ss_pred ----------hhhHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHcCChh------HHHHHHHHHHHHHHHHHHHHHH
Confidence 788889999999999999999998889999998887765543 3457888889999999999999
Q ss_pred HHHhccCCChhHHHHHHHHHHHHHHHHHHHHhh-----cCCChhHHHHHHHHHHHHHHHHHHHHHhhccc-cCCC-----
Q 007565 304 GIFRGFKDTKTPVLCLGIGNLLAVFLFPILIYF-----CQLGMPGAAISTVVSQYIVAVTMIWFLNKKVV-LMPP----- 372 (598)
Q Consensus 304 ~~l~~~~~~~~~~~~~~~~~~~~i~l~~lli~~-----~~~Gi~Gaa~at~is~~~~~~~~~~~l~~~~~-~~~~----- 372 (598)
+++|+.+|++..++.++++.+++++++..++.. ..+|+.|+++++.+++++..++.+++.+++.+ +.+.
T Consensus 137 ~~l~~~~~~~~~~~~~~i~~i~~~~~~~~~~~~~~~~~~~~~v~g~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 216 (488)
T TIGR02900 137 GYFQGISNMKPPAYIQVIEQIVRISVVALLISAFLPYGLEYAVAGAYLSLVLGELVSLLYLYFFFKRKKSFSIRFPFFDY 216 (488)
T ss_pred HHHhhhccchHhHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccc
Confidence 999999999999999999999998887666542 24678899999999999999988776654322 1111
Q ss_pred -CccchhhhhhHhhcHHHHHHHHHHHHHHHHHHHHHHhc----C---hhHHHHH----HHHHHHHHHHHHHHHHHHHHHH
Q 007565 373 -KMGALQFGDYVKSGGFLLGRTLAVLITMTLGTSMAARQ----G---SDAMAAH----QICMQVWLAVSLLTDALAASGQ 440 (598)
Q Consensus 373 -~~~~~~~~~~lk~~~p~~~~~~~~~i~~~i~~~i~~~~----g---~~~vaa~----~i~~~i~~~~~~~~~~l~~a~~ 440 (598)
+.++..+|+++++++|..++.+...+...+++.+++++ | .++.+.+ +++.++..++..+..+++++..
T Consensus 217 ~~~~~~~~k~l~~~~~p~~l~~~~~~~~~~~d~~ii~~~l~~~g~~~~~a~~~~g~~~~~a~~i~~~~~~~~~~l~~~~~ 296 (488)
T TIGR02900 217 KSEGKALLFDLFSVSLPLTLSRFIGSLLYFLETLLVPQRLVIAGVTYREATSLYGKLSGMAMPLLTFPAVITSSLSTALV 296 (488)
T ss_pred CcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHChHHHHHHhHHHHHHHHHHHHH
Confidence 12344789999999999999999999999999888754 2 1222333 3456677777777899999999
Q ss_pred HHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhccCCChHHHHHHHHHHHHHHhhhHHHHHHHHHHh
Q 007565 441 ALIASYVSKGDFKTVREITNFVLKIGVLTGVSLATILGLSFGSLAPLFTKDPKVLGIVGTGVLFVSASQPINALAFIFDG 520 (598)
Q Consensus 441 p~is~~~g~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~l~~lf~~d~~v~~~~~~~l~i~~~~~~~~~~~~i~~~ 520 (598)
|.+++..|++|+++.++..++.+++...+++|.++++..+++++..+|.++++ +..+++++++..++..+..+..+
T Consensus 297 p~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~----~~~~l~i~~~~~~~~~~~~~~~~ 372 (488)
T TIGR02900 297 PDISEAMAKKNYSSIEKRINQAIKISLLLGLITTVILLVIPDELGALFYGRPD----AGNFIRVLAPSFPFLYFSAPLQS 372 (488)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCc----hHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999886543 56789999999999999999999
Q ss_pred HHhhcCchHHHHHHHHHHHHHHHHHHHhhc--cCCChHHHHHHHHHHHHHHHHHHHHHHHh
Q 007565 521 LHYGVSDFRYAACSMMLVGAMSSTFLLYAP--RATGLPGVWAGLTLFMGLRTVAGFVRLLS 579 (598)
Q Consensus 521 ~l~~~g~~~~~~~~~~~~~l~~~~~~~~l~--~~~Gi~G~~~a~~i~~~v~~~~~~~~l~~ 579 (598)
++++.||+|..++.+.+..+++.++++.+. +.+|+.|+|+++.+++++..++..+..++
T Consensus 373 ~l~~~g~~~~~~~~~~~~~i~~i~l~~~l~~~~~~G~~Gaaia~~i~~~~~~~~~~~~~~~ 433 (488)
T TIGR02900 373 ILQGLGKQKVALRNSLIGAIVKIILLFVLTSIPSINIYGYAITFIITSVLVTILNLAEIKK 433 (488)
T ss_pred HHHhcCcchHHHHHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999888888887777766 88999999999999999998888887744
No 9
>KOG1347 consensus Uncharacterized membrane protein, predicted efflux pump [General function prediction only]
Probab=100.00 E-value=1.2e-34 Score=307.36 Aligned_cols=431 Identities=20% Similarity=0.223 Sum_probs=385.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhccChhhhhhhhhHHHHHHHHHHHhhhhhhhHHHHHHHHHHHhhhhhhh
Q 007565 139 DAKNELIVLTLPAIAGQVIDPLAQLMETAYVGRLGSVELASAGVSISIFNIVSKLFNIPLLSVATSFVAEDIAKNLTKDL 218 (598)
Q Consensus 139 ~~~~~l~~~a~p~~~~~l~~~l~~~vd~~~vg~lg~~~laa~~~a~~i~~~~~~~~~~gl~~~~~~~va~~~~~~~~~~~ 218 (598)
.+.|++++++.|+++..+.+++.+++++.++||+|+.++++.++++...+....-+..|+.++..++++|++|.++
T Consensus 25 ~e~k~l~~ia~P~i~~~~~~~~~~~is~~f~GhlG~leLaa~sla~s~~n~~~~s~~~gl~~aletlcgQa~ga~~---- 100 (473)
T KOG1347|consen 25 TESKELARLALPAILTFLAQPLLSLVSTAFAGHLGNLELASVSLANSFANITGVSILLGLQLALDTLCGQAFGAKK---- 100 (473)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhccccchHHHHHHHHHHhhcccchHHhhccchhhhcchHhhhcccc----
Confidence 4578999999999999999999999999999999999999999999999997777778899999999999999988
Q ss_pred hhccCCCCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHchHHHHhhcCCCCCccchhHHHHHHHHHHhhHHHHHH
Q 007565 219 AAGLEGNGKPPNGTTERKQLSSVSTALLLAVGIGIFEAAALSLASGPFLNLMGVPSASAMHGPAKKFLMLRALGSPAFVV 298 (598)
Q Consensus 219 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~i~~~~~~~~~~~i~~~a~~yl~~~~~~~~~~~l 298 (598)
++....+.+++..+.+..+++.+. ++.+.+||+..++++++ +...+..|.+++++..+.+..
T Consensus 101 ---------------~~~lg~~lqrs~~~l~~~~~~~~~-l~~~~~~il~~lgq~~~--i~~~a~~y~~~~ip~~~a~~~ 162 (473)
T KOG1347|consen 101 ---------------FTALGVYLQRSGIVLLVQGLPISL-LILNSEPILLLLGQDPD--ISRDAGSYAFMLIPGLFSYAV 162 (473)
T ss_pred ---------------cchhhHHHHHHHHHHHHHHHHHHH-HHHccHHHHHHhCCChh--HHHHHhhhHhhhcchhhhhHH
Confidence 788888899998888888888776 67778999999999988 999999999999999999999
Q ss_pred HHHHHHHHhccCCChhHHHHHHHHHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHHHHHHHHhhcc-ccCCCC--cc
Q 007565 299 SLALQGIFRGFKDTKTPVLCLGIGNLLAVFLFPILIYFCQLGMPGAAISTVVSQYIVAVTMIWFLNKKV-VLMPPK--MG 375 (598)
Q Consensus 299 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~l~~lli~~~~~Gi~Gaa~at~is~~~~~~~~~~~l~~~~-~~~~~~--~~ 375 (598)
...++.++|+++++.+..++..+..++|+.+++++++.+++|+.|++++..+++|+...++.+|..... ...|.. .+
T Consensus 163 ~~~l~~~lq~Q~~~~~~~~~~~~~~~lhi~~~~llv~~~~~g~~Gaala~~~s~w~~~~~l~~yi~~~~~~~~w~~~s~~ 242 (473)
T KOG1347|consen 163 SFPLAKFLQAQSITLPLLVIGLVALVLHILLTWLLVSKLGLGIKGAALALVASYWLNVRILLLYAVLSGCLAAWSGFSGE 242 (473)
T ss_pred HHHHHHHHHhccCchHHHHHHHHHHHHHHHHHHHhhhcccCCCccchHHHHHHHHHHHHHHHHHheecCchhhhhhhhHh
Confidence 999999999999999999999999999999999999999999999999999999999999999986543 222222 22
Q ss_pred chhhhhhHhhcHHHHHHHHHHHHHHHHHHHHHHhcC--hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChH
Q 007565 376 ALQFGDYVKSGGFLLGRTLAVLITMTLGTSMAARQG--SDAMAAHQICMQVWLAVSLLTDALAASGQALIASYVSKGDFK 453 (598)
Q Consensus 376 ~~~~~~~lk~~~p~~~~~~~~~i~~~i~~~i~~~~g--~~~vaa~~i~~~i~~~~~~~~~~l~~a~~p~is~~~g~~~~~ 453 (598)
...++++++.++|..++...+++.+.+...+.+.++ ..++++.+++.++....++++.+++.+..+++++.+|+|+++
T Consensus 243 ~~~~~~~~~lai~s~~miclE~w~~eil~l~~G~l~np~~~~~~~sI~~~~~~~~~~~~~~~~~a~strv~neLGag~p~ 322 (473)
T KOG1347|consen 243 FDSWGPFFALAIPSAVMICLEWWAYEILVLLAGLLGNAKVSLASQSICLEIGGWHLMIPGAFSAAVSTRVSNELGAGKPK 322 (473)
T ss_pred hhhHHHHHHHhhcchheeHHHHHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHcCCChh
Confidence 567889999999999999999999999999999997 588999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhccCCChHHHHHHHHHHHHHHhhhHHHHHHHHHHhHHhhcCchHHHHH
Q 007565 454 TVREITNFVLKIGVLTGVSLATILGLSFGSLAPLFTKDPKVLGIVGTGVLFVSASQPINALAFIFDGLHYGVSDFRYAAC 533 (598)
Q Consensus 454 ~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~l~~lf~~d~~v~~~~~~~l~i~~~~~~~~~~~~i~~~~l~~~g~~~~~~~ 533 (598)
.+|.....++..++.+++..+..+...++.+..+|++|+|+.+......+++++..++++.+.++.++.+|.|+++...+
T Consensus 323 ~ar~~~~v~~~~~~~~g~~~~~~~~~~r~~~~~ift~~~ev~~~va~~~pll~~~~~~~~~q~v~~Gva~g~g~q~~ga~ 402 (473)
T KOG1347|consen 323 RARVSAKVALQTSVAIGASLGTTLLACREVLGQIFTNSKEVLDLVADLTPLLALSILLNALQAVLSGVARGSGWQQIGAV 402 (473)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhccchhhhhheEEeeccccceEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999877
Q ss_pred HHHHH----HHHHHHHHHhhccCCChHHHHHHHHHHHHHHHHHHHHHHHhcCCCccccccChhhh
Q 007565 534 SMMLV----GAMSSTFLLYAPRATGLPGVWAGLTLFMGLRTVAGFVRLLSKSGPWWFLHTDLEGA 594 (598)
Q Consensus 534 ~~~~~----~l~~~~~~~~l~~~~Gi~G~~~a~~i~~~v~~~~~~~~l~~~~~~w~~~~~~~~~~ 594 (598)
.+... +++...+. -+..++|..|+|+++..+..+......+.. .+.+|.+..++.+++
T Consensus 403 vnl~~yyl~G~p~g~~l-~~~~~~g~~glw~G~~~~~~~~~~~l~~~~--~~tdW~~~~~~a~~~ 464 (473)
T KOG1347|consen 403 INLVAYYLVGAPVGLYL-GFFTKFGVKGLWIGILLGFSVQTLVLAIVT--ARTDWKNQAEKAFAR 464 (473)
T ss_pred EeeeeeeEecCcceeEE-EEEEecCceEEEeehHHHHHHHHHHHHHhe--eeccHHHHHHHHHHH
Confidence 55443 33332222 234679999999999999766666665553 667898776555544
No 10
>TIGR00797 matE putative efflux protein, MATE family. The MATE family consists of probable efflux proteins including a functionally characterized multi drug efflux system from Vibrio parahaemolyticus, a putative ethionine resistance protein of Saccharomyces cerevisiae, and the functionally uncharacterized DNA damage-inducible protein F (DinF) of E. coli. These proteins have 12 probable TMS.
Probab=100.00 E-value=1.1e-32 Score=286.11 Aligned_cols=334 Identities=31% Similarity=0.453 Sum_probs=305.1
Q ss_pred HHHHHHHHHHHHHHHhHHHHhccChhhhhhhhhHHHHHHHHHHHhhhhhhhHHHHHHHHHHHhhhhhhhhhccCCCCCCC
Q 007565 150 PAIAGQVIDPLAQLMETAYVGRLGSVELASAGVSISIFNIVSKLFNIPLLSVATSFVAEDIAKNLTKDLAAGLEGNGKPP 229 (598)
Q Consensus 150 p~~~~~l~~~l~~~vd~~~vg~lg~~~laa~~~a~~i~~~~~~~~~~gl~~~~~~~va~~~~~~~~~~~~~~~~~~~~~~ 229 (598)
|.++.+++..+++.+|+++++++|++++++++++.++.+....+ ..|+..+..+.+++++|+++
T Consensus 1 p~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~a~~i~~~~~~~-~~~i~~~~~~~~s~~~g~~~--------------- 64 (342)
T TIGR00797 1 PAILANILQPLLGLVDTAFVGHLGPVDLAAVSLGSSVFMFLFSI-LMGLGTATTALVAQAVGAGN--------------- 64 (342)
T ss_pred ChHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHhHHHHHHHHHH-HHHHHHhHHHHHHHHHCCCC---------------
Confidence 78899999999999999999999999999999998887766654 55889999999999998876
Q ss_pred CCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHchHHHHhhcCCCCCccchhHHHHHHHHHHhhHHHHHHHHHHHHHHhcc
Q 007565 230 NGTTERKQLSSVSTALLLAVGIGIFEAAALSLASGPFLNLMGVPSASAMHGPAKKFLMLRALGSPAFVVSLALQGIFRGF 309 (598)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~i~~~~~~~~~~~i~~~a~~yl~~~~~~~~~~~l~~~~~~~l~~~ 309 (598)
+++.++.+++.+.+.++++++.+++++++++++.++++.+++ ..+.+..|++++.++.++..+..+..+++|+.
T Consensus 65 ----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~--~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~ 138 (342)
T TIGR00797 65 ----YQRLGRQAQQSLLLALLLGLPVLLVGYFFIDPLLSLMGADGE--VAELAQDYLRILILGIPAYLLNFVLRGFLRGQ 138 (342)
T ss_pred ----hHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCCCHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 788899999999999999999999999999999999875554 77889999999999999999999999999999
Q ss_pred CCChhHHHHHHHHHHHHHHHHHHHHh-hcC-CChhHHHHHHHHHHHHHHHHHHHHHhhcccc-C----CCCccchhhhhh
Q 007565 310 KDTKTPVLCLGIGNLLAVFLFPILIY-FCQ-LGMPGAAISTVVSQYIVAVTMIWFLNKKVVL-M----PPKMGALQFGDY 382 (598)
Q Consensus 310 ~~~~~~~~~~~~~~~~~i~l~~lli~-~~~-~Gi~Gaa~at~is~~~~~~~~~~~l~~~~~~-~----~~~~~~~~~~~~ 382 (598)
||++.+++.++++.++++++++++++ .++ +|+.|+++++.+++++..++.+++++|+.+. . +.++++..+|++
T Consensus 139 ~~~~~~~~~~i~~~~~~i~~~~~li~~~~g~~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~ 218 (342)
T TIGR00797 139 GDTKTPMYITLIGNVINIILNYILIFGKFGFLGIVGAALATVISYWLMFLLLLYYIKKAKKIGLKWEGLLKPDWEVLKRL 218 (342)
T ss_pred CCchHHHHHHHHHHHHHHHHhHHHHhcCccccccHHHHHHHHHHHHHHHHHHHHHHHhCCCcccccccccCCCHHHHHHH
Confidence 99999999999999999999999987 567 8899999999999999999988887653221 1 234566788999
Q ss_pred HhhcHHHHHHHHHHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHH
Q 007565 383 VKSGGFLLGRTLAVLITMTLGTSMAARQGSDAMAAHQICMQVWLAVSLLTDALAASGQALIASYVSKGDFKTVREITNFV 462 (598)
Q Consensus 383 lk~~~p~~~~~~~~~i~~~i~~~i~~~~g~~~vaa~~i~~~i~~~~~~~~~~l~~a~~p~is~~~g~~~~~~~~~~~~~~ 462 (598)
+++++|.+++.+..++...+++.+++.+|++++++|+++.++.++..+++.+++++..|.++++++++|.+++++..+++
T Consensus 219 ~~~~~P~~~~~l~~~~~~~~~~~i~~~~g~~~v~~~~~a~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 298 (342)
T TIGR00797 219 LKLGLPIAFRVILESLSFALLALLVARLGSIALAAHQIALNVESLLFMPAFGFGIAVSILVGQALGAGDPKRAKEVARVA 298 (342)
T ss_pred HHhCchHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhhhccCCChHHHHHHHHHHHHH
Q 007565 463 LKIGVLTGVSLATILGLSFGSLAPLFTKDPKVLGIVGTGVLFV 505 (598)
Q Consensus 463 l~~~~~~~~~~~~~l~~~~~~l~~lf~~d~~v~~~~~~~l~i~ 505 (598)
+++.+.++++.+.++.++++++.++|++|+++.+.+..++++.
T Consensus 299 ~~~~~~~~~~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 341 (342)
T TIGR00797 299 LKLSLLLGLVLAIILILFREFIARLFTNDPEVLELAAIYLIFV 341 (342)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999998888764
No 11
>PRK15099 O-antigen translocase; Provisional
Probab=100.00 E-value=5.6e-32 Score=288.48 Aligned_cols=401 Identities=15% Similarity=0.110 Sum_probs=342.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHhc-cChhhhhhhhhHHHHHHHHHHHhhhhhhhHHHHHHHHHHHhhhhhhhhhcc
Q 007565 144 LIVLTLPAIAGQVIDPLAQLMETAYVGR-LGSVELASAGVSISIFNIVSKLFNIPLLSVATSFVAEDIAKNLTKDLAAGL 222 (598)
Q Consensus 144 l~~~a~p~~~~~l~~~l~~~vd~~~vg~-lg~~~laa~~~a~~i~~~~~~~~~~gl~~~~~~~va~~~~~~~~~~~~~~~ 222 (598)
++|.+.....+.++..+.+++-..++.| +|++++|.++...++...+..+...|+.++.++.++|+ +++
T Consensus 3 ~~k~~~~~~~~~~~~~~~~~l~~~i~ar~Lg~~~~G~~~~~~~~i~~~~~~~~~G~~~a~~~~ia~~--~~~-------- 72 (416)
T PRK15099 3 LAKASLWTAASTLVKIGAGLLVVKLLAVSFGPAGVGQAGNFRQLITVLGVLAGAGIFNGVTKYVAQY--HDQ-------- 72 (416)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcHHHHHHHHHHHHHHHHHHHHcCCccceeeeeHHhc--CCC--------
Confidence 5677888889999999999999999999 99999999999999999888887888888888888775 222
Q ss_pred CCCCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHchHHHHhhcCCCCCccchhHHHHHHHHHHhhHHHHHHHHHH
Q 007565 223 EGNGKPPNGTTERKQLSSVSTALLLAVGIGIFEAAALSLASGPFLNLMGVPSASAMHGPAKKFLMLRALGSPAFVVSLAL 302 (598)
Q Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~i~~~~~~~~~~~i~~~a~~yl~~~~~~~~~~~l~~~~ 302 (598)
+++.++++++++.+.++.+++.+++++++.+|+...++.+++ ...+..+..+..++..+....
T Consensus 73 -----------~~~~~~~~~~~~~l~~~~~~i~~~~~~~~~~~i~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~ 135 (416)
T PRK15099 73 -----------PQQLRAVVGTSSAMVLGFSTLLALVFLLAAAPISQGLFGHTD------YQGVVRAVALIQMGIAWANLL 135 (416)
T ss_pred -----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChh------HHHHHHHHHHHHHHHHHHHHH
Confidence 677889999999999999999999999999999988875543 345566666666677888999
Q ss_pred HHHHhccCCChhHHHHHHHHHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHHHHHHHHhhccc-c---CCCCccchh
Q 007565 303 QGIFRGFKDTKTPVLCLGIGNLLAVFLFPILIYFCQLGMPGAAISTVVSQYIVAVTMIWFLNKKVV-L---MPPKMGALQ 378 (598)
Q Consensus 303 ~~~l~~~~~~~~~~~~~~~~~~~~i~l~~lli~~~~~Gi~Gaa~at~is~~~~~~~~~~~l~~~~~-~---~~~~~~~~~ 378 (598)
++.+|+.+|++.++...+++.++|+++ +++++.. .|+.|+++|+++++.+..+..+++++|++. . .+.++++..
T Consensus 136 ~~~lr~~~~~~~~~~~~~~~~~~~i~l-~i~~~~~-~Gv~Ga~iat~i~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 213 (416)
T PRK15099 136 LAILKGFRDAAGNALSLIVGSLIGVAA-YYLCYRL-GGYEGALLGLALVPALVVLPAGIMLIRRGTIPLSYLKPSWDNGL 213 (416)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHH-hcchHHHHHHHHHHHHHHHHHHHHHHHccceehHhhhccCCHHH
Confidence 999999999999999999999999887 4444432 399999999999999998887777755432 1 133456667
Q ss_pred hhhhHhhcHHHHHHHHHHHHHHHHHHHHHH-hcChhHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhcCCChHHHH
Q 007565 379 FGDYVKSGGFLLGRTLAVLITMTLGTSMAA-RQGSDAMAAHQICMQVWLA-VSLLTDALAASGQALIASYVSKGDFKTVR 456 (598)
Q Consensus 379 ~~~~lk~~~p~~~~~~~~~i~~~i~~~i~~-~~g~~~vaa~~i~~~i~~~-~~~~~~~l~~a~~p~is~~~g~~~~~~~~ 456 (598)
+|++++++.|...+++...+...+++.+++ .+|++++++|+++.++.+. ...+..+++++.+|.+++. +|.++.+
T Consensus 214 ~k~ll~~g~p~~~~~~~~~i~~~~~~~~l~~~~g~~~vg~y~~a~~i~~~~~~~~~~~~~~a~~P~~s~~---~~~~~~~ 290 (416)
T PRK15099 214 AGQLGKFTLMALITSVTLPVAYVMMRNLLAAHYSWDEVGIWQGVSSISDAYLQFITASFSVYLLPTLSRL---TEKRDIT 290 (416)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc---CChHHHH
Confidence 899999999999999999999999999996 7899999999999999774 5788899999999999995 6789999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhhhccCCChHHHHHHHHHHHHHHhhhHHHHHHHHHHhHHhhcCchHHHHHHHH
Q 007565 457 EITNFVLKIGVLTGVSLATILGLSFGSLAPLFTKDPKVLGIVGTGVLFVSASQPINALAFIFDGLHYGVSDFRYAACSMM 536 (598)
Q Consensus 457 ~~~~~~l~~~~~~~~~~~~~l~~~~~~l~~lf~~d~~v~~~~~~~l~i~~~~~~~~~~~~i~~~~l~~~g~~~~~~~~~~ 536 (598)
+..++...+...++++.+++++++++++.++|.+|+ ++.+.+++++++++.++...+..+...+.+.++++......+
T Consensus 291 ~~~~~~~~~~~~~~~~~~~~~~l~a~~ii~l~~g~~--~~~~~~~~~~l~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~ 368 (416)
T PRK15099 291 REIVKALKFVLPAVAAASFTVWLLRDFAIWLLFSNK--FTAMRDLFAWQLVGDVLKVGAYVFGYLVIAKASLRFYILAEV 368 (416)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999876 555788899999999888888877777778888888888787
Q ss_pred HHHHHHHHHHHhhccCCChHHHHHHHHHHHHHHHHHHHHHHH
Q 007565 537 LVGAMSSTFLLYAPRATGLPGVWAGLTLFMGLRTVAGFVRLL 578 (598)
Q Consensus 537 ~~~l~~~~~~~~l~~~~Gi~G~~~a~~i~~~v~~~~~~~~l~ 578 (598)
...++..++++++++.+|..|+++++.+++.+.+++..+...
T Consensus 369 ~~~~l~i~l~~~li~~~G~~G~a~a~~is~~~~~~~~~~~~~ 410 (416)
T PRK15099 369 SQFTLLTGFAHWLIPLHGALGAAQAYMATYIVYFSLCCGVFL 410 (416)
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 777788888888999999999999999999999887776653
No 12
>COG0728 MviN Uncharacterized membrane protein, putative virulence factor [General function prediction only]
Probab=100.00 E-value=4.2e-30 Score=270.31 Aligned_cols=423 Identities=12% Similarity=0.056 Sum_probs=361.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHhc-cChhh-hhhhhhHHHHHHHHHHHhhhhhhhHHHHHHHHHHHhhhhhhh
Q 007565 141 KNELIVLTLPAIAGQVIDPLAQLMETAYVGR-LGSVE-LASAGVSISIFNIVSKLFNIPLLSVATSFVAEDIAKNLTKDL 218 (598)
Q Consensus 141 ~~~l~~~a~p~~~~~l~~~l~~~vd~~~vg~-lg~~~-laa~~~a~~i~~~~~~~~~~gl~~~~~~~va~~~~~~~~~~~ 218 (598)
.+.++|.++-.....+++++.+++...+++. +|+.. .+|+.++..++|.+-.++..|. ..+++++.+.-++++++
T Consensus 6 ~~sllks~~~vs~~Tl~SRi~G~vRd~~iA~~fGa~~~aDAF~vAf~iPN~lRrlfaega--fs~aFVPv~~~~~~~~~- 82 (518)
T COG0728 6 KMSLLKSLIIVSSATLLSRILGFVRDVLIAAAFGAGAAADAFFVAFKLPNLLRRLFAEGA--FSSAFVPVLAEAKKKEG- 82 (518)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHhHHHHHHHHhchh--HhhhhhHHHHHHHHcch-
Confidence 4578899999999999999999999999999 99965 6799999999999999988763 23444444322222111
Q ss_pred hhccCCCCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHchHHHHhhcCCCC-CccchhHHHHHHHHHHhhHHHHH
Q 007565 219 AAGLEGNGKPPNGTTERKQLSSVSTALLLAVGIGIFEAAALSLASGPFLNLMGVPS-ASAMHGPAKKFLMLRALGSPAFV 297 (598)
Q Consensus 219 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~i~~~~~~~~-~~~i~~~a~~yl~~~~~~~~~~~ 297 (598)
+++.+........+...+.+.++++..+++|++.+.+..+. |++....+....+++.|.+++..
T Consensus 83 ---------------~~~~~~f~~~v~~~l~~~ll~vt~L~~l~~p~iv~~~~~~g~~~~~~~~a~~l~~i~~Pyl~~is 147 (518)
T COG0728 83 ---------------EEAARFFSRLVTGLLTLVLLLVTLLGILFAPWLVRLLLAPGFDETDKFLAVLLTRILFPYLLFIS 147 (518)
T ss_pred ---------------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchhhHHHHHHHHHHHHHHHHHHH
Confidence 34555555555557777777888888889999995554342 21123368888999999999999
Q ss_pred HHHHHHHHHhccCCChhHHHHHHHHHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHHHHHHHHhhccccCCCCc--c
Q 007565 298 VSLALQGIFRGFKDTKTPVLCLGIGNLLAVFLFPILIYFCQLGMPGAAISTVVSQYIVAVTMIWFLNKKVVLMPPKM--G 375 (598)
Q Consensus 298 l~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~l~~lli~~~~~Gi~Gaa~at~is~~~~~~~~~~~l~~~~~~~~~~~--~ 375 (598)
+...+.++||+.+++..|.+.+++.|+.-++....+......-..+.++|++++-+.+.++.++.++|.+...++++ +
T Consensus 148 L~al~~aiLNs~~~F~~~a~aPvl~Nv~~I~~~l~~~~~~~~~~~~La~gvl~Gg~~Q~l~~lp~l~~~g~~~~p~~~~~ 227 (518)
T COG0728 148 LSALFGAILNSRNRFFIPAFAPVLLNVSVIGLALFLGPYFDPPLLALAWGVLIGGLLQLLVQLPALRKAGLLIKPRFGFK 227 (518)
T ss_pred HHHHHHHHHhccCeechhhhhHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHcccccCCCCCCC
Confidence 99999999999999999999999999988866655554433247789999999999999999999999876666555 4
Q ss_pred chhhhhhHhhcHHHHHHHHHHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhcCCChHH
Q 007565 376 ALQFGDYVKSGGFLLGRTLAVLITMTLGTSMAARQGSDAMAAHQICMQVWLAVS-LLTDALAASGQALIASYVSKGDFKT 454 (598)
Q Consensus 376 ~~~~~~~lk~~~p~~~~~~~~~i~~~i~~~i~~~~g~~~vaa~~i~~~i~~~~~-~~~~~l~~a~~p~is~~~g~~~~~~ 454 (598)
+...|++++...|..+.....++...+++.+++.+.+.+++.++.+.++++++. ++..+++++..|.+|++..++|.++
T Consensus 228 ~~~lk~~~~~~~p~~l~~sisQi~lli~~~iAS~l~~Gsis~l~YA~rl~qlPlGifgvai~tvllP~lSr~~~~~~~~~ 307 (518)
T COG0728 228 DPGLKRFLKLMLPALLGVSISQINLLIDTAIASFLAEGSVSWLYYADRLYQLPLGIFGVALSTVLLPSLSRHAANGDWPE 307 (518)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhcCChHH
Confidence 468999999999999999999999999999999999999999999999999988 5568999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhccCC----ChHHHHHHHHHHHHHHhhhHHHHHHHHHHhHHhhcCchHH
Q 007565 455 VREITNFVLKIGVLTGVSLATILGLSFGSLAPLFTK----DPKVLGIVGTGVLFVSASQPINALAFIFDGLHYGVSDFRY 530 (598)
Q Consensus 455 ~~~~~~~~l~~~~~~~~~~~~~l~~~~~~l~~lf~~----d~~v~~~~~~~l~i~~~~~~~~~~~~i~~~~l~~~g~~~~ 530 (598)
.++..++++++++++.+|.++++.++++++++++.. +++....+.+.+..+++++++..+..++...+++.+|+|.
T Consensus 308 ~~~~l~~~i~l~lll~lP~~~~l~~la~piv~~Lf~rG~F~~~d~~~ta~~L~~y~~gL~~~~L~~ll~~~FYAr~d~kt 387 (518)
T COG0728 308 FLKLLDWGLRLTLLLTLPASAGLLVLAEPIVSLLFERGAFTAEDVLMTAEALAAYSLGLIPFALVKLLSRVFYAREDTKT 387 (518)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHccCCCc
Confidence 999999999999999999999999999999999743 5667888999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhhccCCChHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 007565 531 AACSMMLVGAMSSTFLLYAPRATGLPGVWAGLTLFMGLRTVAGFVRLLSKS 581 (598)
Q Consensus 531 ~~~~~~~~~l~~~~~~~~l~~~~Gi~G~~~a~~i~~~v~~~~~~~~l~~~~ 581 (598)
|+++.++..++++.+++.+.+.+|..|++.+..++.++.+.+.++.++++.
T Consensus 388 P~~i~ii~~~~n~~l~~~l~~~~~~~giala~s~a~~~~~~ll~~~l~k~~ 438 (518)
T COG0728 388 PMKIAIISLVVNILLNLLLIPPLGHVGLALATSLAAWVNALLLYYLLRKRL 438 (518)
T ss_pred ChHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 999999999999999988889999999999999999999998888886554
No 13
>PF03023 MVIN: MviN-like protein; InterPro: IPR004268 This entry represents MviN, a family of integral membrane proteins predicted to have ten or more transmembrane regions. Although frequently listed as a virulence protein, it is not restricted to pathogens and it is an essential protein in Sinorhizobium meliloti. In a number of species its gene is adjacent to that of the uridylyltransferase GlnD, the signal-transducing enzyme that performs the key modification to the nitrogen regulatory protein PII []. Disruption of the MviN open reading frame results in flagellar structures that contain only the basal body and hook complex that lack the flagellum; suggesting that MviN might be involved in flagellin export or assembly []. Genome comparison studies led to MviN being predicted to be a peptidoglycan lipid II flippase though currently there is no direct evidence to support this annotation [].
Probab=100.00 E-value=1.1e-29 Score=271.78 Aligned_cols=389 Identities=14% Similarity=0.135 Sum_probs=342.6
Q ss_pred cChhh-hhhhhhHHHHHHHHHHHhhh-hhhhHHHHHHHHHHHhhhhhhhhhccCCCCCCCCCcchHHHHHHHHHHHHHHH
Q 007565 172 LGSVE-LASAGVSISIFNIVSKLFNI-PLLSVATSFVAEDIAKNLTKDLAAGLEGNGKPPNGTTERKQLSSVSTALLLAV 249 (598)
Q Consensus 172 lg~~~-laa~~~a~~i~~~~~~~~~~-gl~~~~~~~va~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 249 (598)
+|..+ .+++.++..+++.+..++.. ++..+..|...+.. +++ +++.++..++.+.+..
T Consensus 5 fG~s~~~Daf~~A~~ip~~l~~l~~~gal~~~~IP~~~~~~-~~~-------------------~~~~~~f~~~~~~~~~ 64 (451)
T PF03023_consen 5 FGASAEADAFFVAFTIPNFLRSLLAGGALSAAFIPVFSKAR-EKG-------------------EEEARRFISTLLTILL 64 (451)
T ss_pred hcCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-ccC-------------------HHHHHHHHHHHHHHHH
Confidence 67654 67999999999999877653 34444455554443 222 6778888899999988
Q ss_pred HHHHHHHHHHHHchHHHHhhcCCCCCccchhHHHHHHHHHHhhHHHHHHHHHHHHHHhccCCChhHHHHHHHHHHHHHHH
Q 007565 250 GIGIFEAAALSLASGPFLNLMGVPSASAMHGPAKKFLMLRALGSPAFVVSLALQGIFRGFKDTKTPVLCLGIGNLLAVFL 329 (598)
Q Consensus 250 ~~~~~~~~~l~~~~~~i~~~~~~~~~~~i~~~a~~yl~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~l 329 (598)
++.++++++.+++++++.+.+....+++..+.+.++++++.+..++..+..++.+++|+++|+..|...+++.++..++.
T Consensus 65 ~~~~~l~~l~~lfa~~iv~~la~g~~~~~~~la~~l~~i~~~~~~~~~l~~i~~a~L~~~~~F~~~~~~~l~~N~~~I~~ 144 (451)
T PF03023_consen 65 IISLLLTLLGILFAPPIVRLLAPGFSPETIELAVQLLRILAPSILFIGLSSIFSAILNAHRRFLIPALSPLLFNLSIILS 144 (451)
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHHHH
Confidence 89999999999999999999976666678899999999999999999999999999999999999999999998887664
Q ss_pred HHHHHhhcCCC---hhHHHHHHHHHHHHHHHHHHHHHhhccccCCCCc--cchhhhhhHhhcHHHHHHHHHHHHHHHHHH
Q 007565 330 FPILIYFCQLG---MPGAAISTVVSQYIVAVTMIWFLNKKVVLMPPKM--GALQFGDYVKSGGFLLGRTLAVLITMTLGT 404 (598)
Q Consensus 330 ~~lli~~~~~G---i~Gaa~at~is~~~~~~~~~~~l~~~~~~~~~~~--~~~~~~~~lk~~~p~~~~~~~~~i~~~i~~ 404 (598)
..++. ...| +.+.++|.+++..++.++++...+|.+...++++ +++..|++++...|.++.....++...+++
T Consensus 145 ~~~~~--~~~~~~~i~~la~g~~~g~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~~qi~~lv~~ 222 (451)
T PF03023_consen 145 LLLLS--NSWGQENIYALAWGVLIGAIIQFLIQLPYLRRFGFRFRPKFDWRDPNLKRFLKLAIPLLLSSSISQINILVDR 222 (451)
T ss_pred HHHHH--HhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHCCCcccccCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44433 3466 8999999999999999999999998776655544 455789999999999999999999999999
Q ss_pred HHHHhcChhHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 007565 405 SMAARQGSDAMAAHQICMQVWLAVSLL-TDALAASGQALIASYVSKGDFKTVREITNFVLKIGVLTGVSLATILGLSFGS 483 (598)
Q Consensus 405 ~i~~~~g~~~vaa~~i~~~i~~~~~~~-~~~l~~a~~p~is~~~g~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~ 483 (598)
.+++.+++..+++++.+.++.+++..+ ..+++++..|.+++...++|.++.++..+++++..+.+.+|.++++..++++
T Consensus 223 ~laS~l~~G~vs~l~YA~~l~~lp~~i~~~~i~tv~~P~ls~~~~~~d~~~~~~~~~~~l~~~~~i~iP~~~~~~~~a~~ 302 (451)
T PF03023_consen 223 ALASFLGEGSVSALNYAQRLYQLPLGIFAVSISTVVFPKLSRLAAEGDWEEFRKTLRKALRLILLILIPASIGLIVLAEP 302 (451)
T ss_pred HHHhCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHH
Confidence 999999999999999999999987755 6789999999999999999999999999999999999999999999999999
Q ss_pred hhhccC----CChHHHHHHHHHHHHHHhhhHHHHHHHHHHhHHhhcCchHHHHHHHHHHHHHHHHHHHhhccCCChHHHH
Q 007565 484 LAPLFT----KDPKVLGIVGTGVLFVSASQPINALAFIFDGLHYGVSDFRYAACSMMLVGAMSSTFLLYAPRATGLPGVW 559 (598)
Q Consensus 484 l~~lf~----~d~~v~~~~~~~l~i~~~~~~~~~~~~i~~~~l~~~g~~~~~~~~~~~~~l~~~~~~~~l~~~~Gi~G~~ 559 (598)
+++++. -|.|..+.+..++.++++++++.+++.++...+++.+|+|.+++.+++..++++.+.+.+.+.+|..|++
T Consensus 303 iV~llf~rG~F~~~~~~~ta~~l~~y~~~l~~~~l~~ll~r~fya~~~~~~~~~~~~~~~~lni~l~~~l~~~~g~~Gla 382 (451)
T PF03023_consen 303 IVRLLFERGAFTAEDTQLTASALRIYALGLPFYALNDLLSRVFYALGDTKTPVRISVISVVLNIILSILLVPFFGVAGLA 382 (451)
T ss_pred HHHHHHccCCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHccCcHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999975 3677789999999999999999999999999999999999999999999999998888889999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCC
Q 007565 560 AGLTLFMGLRTVAGFVRLLSKSG 582 (598)
Q Consensus 560 ~a~~i~~~v~~~~~~~~l~~~~~ 582 (598)
+++.++.++.+++.++.++++.+
T Consensus 383 la~sl~~~i~~~~l~~~l~r~~~ 405 (451)
T PF03023_consen 383 LATSLSAIISALLLYILLRRRLG 405 (451)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcC
Confidence 99999999999999998866544
No 14
>PRK10459 colanic acid exporter; Provisional
Probab=99.96 E-value=3.5e-25 Score=241.50 Aligned_cols=396 Identities=12% Similarity=0.092 Sum_probs=326.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHhc-cChhhhhhhhhHHHHHHHHHHHhhhhhhhHHHHHHHHHHHhhhhhhhh
Q 007565 141 KNELIVLTLPAIAGQVIDPLAQLMETAYVGR-LGSVELASAGVSISIFNIVSKLFNIPLLSVATSFVAEDIAKNLTKDLA 219 (598)
Q Consensus 141 ~~~l~~~a~p~~~~~l~~~l~~~vd~~~vg~-lg~~~laa~~~a~~i~~~~~~~~~~gl~~~~~~~va~~~~~~~~~~~~ 219 (598)
.++..+-+....++++...+.+++...++.| +|++++|.++.+..+.+++..+...|+..+. + + ++++
T Consensus 4 ~~~~~~g~~w~~~~~~~~~~~~~i~~~ilaR~L~p~~~G~~~~~~~~~~~~~~~~~~Gl~~ai---i-~----~~~~--- 72 (492)
T PRK10459 4 REKTISGAKWTAISTVIIIGLQLVQLTVLARILDNHQFGLLTMSLVIIGFADTLSDMGIGASI---I-Q----RQDI--- 72 (492)
T ss_pred HHHHHccccHHHHHHHHHHHHHHHHHHHHHHhCCHHHccHHHHHHHHHHHHHHHHHcCHHHHH---H-h----cccC---
Confidence 5678888888999999999999999999999 9999999999999999999888887765533 1 1 1110
Q ss_pred hccCCCCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHchHHHHhhcCCCCCccchhHHHHHHHHHHhhHHHHHHH
Q 007565 220 AGLEGNGKPPNGTTERKQLSSVSTALLLAVGIGIFEAAALSLASGPFLNLMGVPSASAMHGPAKKFLMLRALGSPAFVVS 299 (598)
Q Consensus 220 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~i~~~~~~~~~~~i~~~a~~yl~~~~~~~~~~~l~ 299 (598)
. ++...+.+++.++.+++.+++++++++++...++.++ ....+.+..+..++..+.
T Consensus 73 --------------~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-------~~~~~~~~~~~~~~~~~~ 128 (492)
T PRK10459 73 --------------S---HLQLSTLYWLNVGLGIVVFVLVFLLSPLIADFYHNPE-------LAPLIKTLSLAFVIIPIG 128 (492)
T ss_pred --------------C---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChh-------hHHHHHHHHHHHHHHHHh
Confidence 1 1234566777778888877777888888877665332 345677777788888888
Q ss_pred HHHHHHHhccCCChhHHHHHHHHHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHHHHHHHHhhccccCCCCccchhh
Q 007565 300 LALQGIFRGFKDTKTPVLCLGIGNLLAVFLFPILIYFCQLGMPGAAISTVVSQYIVAVTMIWFLNKKVVLMPPKMGALQF 379 (598)
Q Consensus 300 ~~~~~~l~~~~~~~~~~~~~~~~~~~~i~l~~lli~~~~~Gi~Gaa~at~is~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 379 (598)
....+.++..++++......++..++..++...+.+ .++|+.+.+++++++..+..++.++..+++ .+.++++++..+
T Consensus 129 ~~~~~~l~r~~~f~~~a~~~~~~~i~~~~~~i~~~~-~~~g~~~l~~~~~~~~~~~~l~~~~~~~~~-~~~~~~~~~~~~ 206 (492)
T PRK10459 129 QQFRALLQKELEFNKLAKIEISAVVAGFTFAVVSAF-FWPGALAAILGYLVNSSVRTLLFGYFGRKI-YRPALHFSLASV 206 (492)
T ss_pred hHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHH-HCCcHHHHHHHHHHHHHHHHHHHHHHhccc-CCccceecHHHH
Confidence 889999999999999999999888888777766654 478999999999999988877654443332 222333556678
Q ss_pred hhhHhhcHHHHHHHHHHHHHHHHHHHHHHhc-ChhHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhcCCChHHHHH
Q 007565 380 GDYVKSGGFLLGRTLAVLITMTLGTSMAARQ-GSDAMAAHQICMQVWLAVSLL-TDALAASGQALIASYVSKGDFKTVRE 457 (598)
Q Consensus 380 ~~~lk~~~p~~~~~~~~~i~~~i~~~i~~~~-g~~~vaa~~i~~~i~~~~~~~-~~~l~~a~~p~is~~~g~~~~~~~~~ 457 (598)
|++++++.|...+.+...+...+|+.+++.+ |+++++.|+.+.++.+.+... ...+++...|.+++. ++|.++.++
T Consensus 207 k~ll~~~~~~~~~~~~~~~~~~~d~~~lg~~lg~~~vG~Y~~A~~l~~~~~~~i~~~i~~v~~P~~s~~--~~~~~~~~~ 284 (492)
T PRK10459 207 KPNLSFGAWQTAERIINYLNTNIDTILIGRILGAEVLGGYNLAYNVATVPPMKINPIITRVAFPVFAKI--QDDTEKLRV 284 (492)
T ss_pred HHHHhhhHHHHHHHHHHHHHhcCchhhhhHhhchHhhhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHh--cCCHHHHHH
Confidence 9999999999999999999999999998775 899999999999998876554 455788899999885 678899999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhhhccCCChHHHHHHHHHHHHHHhhhHHHHHHHHHHhHHhhcCchHHHHHHHHH
Q 007565 458 ITNFVLKIGVLTGVSLATILGLSFGSLAPLFTKDPKVLGIVGTGVLFVSASQPINALAFIFDGLHYGVSDFRYAACSMML 537 (598)
Q Consensus 458 ~~~~~l~~~~~~~~~~~~~l~~~~~~l~~lf~~d~~v~~~~~~~l~i~~~~~~~~~~~~i~~~~l~~~g~~~~~~~~~~~ 537 (598)
.+++.+++...+++|+++++.++++++..++.+++ +..+...++++++..++..+..+...++++.||+|..++.+++
T Consensus 285 ~~~~~~~~~~~~~~p~~~~l~~~a~~ii~ll~g~~--~~~a~~~l~il~~~~~~~~~~~~~~~~l~a~g~~~~~~~~~~~ 362 (492)
T PRK10459 285 GFLKLLSVLGIINFPLLLGLMVVSNNFVPLVFGEK--WNSAIPILQLLCIVGLLRSVGNPIGSLLLAKGRADLSFKWNVF 362 (492)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhcChh--HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccchhHHHHHH
Confidence 99999999999999999999999999999988765 6778899999999999999999999999999999999988888
Q ss_pred HHHHHHHHHHhhccCCChHHHHHHHHHHHHHHHHHHHHHH
Q 007565 538 VGAMSSTFLLYAPRATGLPGVWAGLTLFMGLRTVAGFVRL 577 (598)
Q Consensus 538 ~~l~~~~~~~~l~~~~Gi~G~~~a~~i~~~v~~~~~~~~l 577 (598)
..++.++..+.+.+.+|+.|+++++.++..+..++.++.+
T Consensus 363 ~~~~~i~~~~~~~~~~G~~g~a~a~~i~~~~~~~~~~~~~ 402 (492)
T PRK10459 363 KTFLFIPAIVIGGQLAGLIGVALGFLLVQIINTILSYFLM 402 (492)
T ss_pred HHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7777777766677789999999999999998888777766
No 15
>COG2244 RfbX Membrane protein involved in the export of O-antigen and teichoic acid [General function prediction only]
Probab=99.93 E-value=3.4e-22 Score=217.37 Aligned_cols=387 Identities=17% Similarity=0.150 Sum_probs=309.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhc-cChhhhhhhhhHHHHHHHHHHHhhhhhhhHHHHHHHHHHHhhhhhhh
Q 007565 140 AKNELIVLTLPAIAGQVIDPLAQLMETAYVGR-LGSVELASAGVSISIFNIVSKLFNIPLLSVATSFVAEDIAKNLTKDL 218 (598)
Q Consensus 140 ~~~~l~~~a~p~~~~~l~~~l~~~vd~~~vg~-lg~~~laa~~~a~~i~~~~~~~~~~gl~~~~~~~va~~~~~~~~~~~ 218 (598)
..+++.|.+....++++...+.+++....++| +|+++.|.++.+.++..++..+...|+..+.+..++++..+++
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~lar~lg~~~~G~~~~~~~~~~~~~~i~~~G~~~ai~r~ia~~~~~~~---- 79 (480)
T COG2244 4 LKKKLIKGALWLLLGTLISALLGLITIPLLARLLGPEGFGLYALALAIIGLFSILADFGLPAAITREIAEYREKGE---- 79 (480)
T ss_pred HHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHhCcccceeeehHHHHHHHHHHHHHcCCcHHHHHHHHHhhcccH----
Confidence 36788899999999999999999999999999 9999999999999999999999888888888887777643332
Q ss_pred hhccCCCCCCCCCcchHHHHHH-HHHHHHHHHHHHHHHHHHHHHchHHHHhhcCCCCCccchhHHHHHHHHHHhhHHHHH
Q 007565 219 AAGLEGNGKPPNGTTERKQLSS-VSTALLLAVGIGIFEAAALSLASGPFLNLMGVPSASAMHGPAKKFLMLRALGSPAFV 297 (598)
Q Consensus 219 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~~~~i~~~~~~~~~~~i~~~a~~yl~~~~~~~~~~~ 297 (598)
+...... +...+.+.++.+.+.........+. + +.....+.+..+..+...
T Consensus 80 ---------------~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~-------~------~~~~~~~~~~~~~~~~~~ 131 (480)
T COG2244 80 ---------------YLLLILLSVLLLLLLALILLLLLLLIAYLLAPI-------D------PVLALLLRILSLALLLLP 131 (480)
T ss_pred ---------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc-------C------hhhHHHHHHHHHHHHHHH
Confidence 2222332 3333333333333333322222111 1 124556777889999999
Q ss_pred HHHHHHHHHhccCCChhHHHHHHHHHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHHHHHHHHh-hccccCCCCcc-
Q 007565 298 VSLALQGIFRGFKDTKTPVLCLGIGNLLAVFLFPILIYFCQLGMPGAAISTVVSQYIVAVTMIWFLN-KKVVLMPPKMG- 375 (598)
Q Consensus 298 l~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~l~~lli~~~~~Gi~Gaa~at~is~~~~~~~~~~~l~-~~~~~~~~~~~- 375 (598)
......+++|+.++++...+..+.. ..-+.....+.. .....+.++..++..........+.. +++...++.++
T Consensus 132 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 207 (480)
T COG2244 132 LSSVLRGLFQGFGRFGPLALSIVSS-IFLLAAVFALLF---AALGLAVWALVLGAVVSLLVLLILLGKKKRGLKRPILRF 207 (480)
T ss_pred HHHHHHHHHHHHhhcccchhHHHHH-HHHHHHHHHHHH---HhhhHHHHHHHHHHHHHHHHHHHHHHHhhhhccccccCc
Confidence 9999999999999999999994444 111122222221 34555667777777776666665553 23323333333
Q ss_pred -chhhhhhHhhcHHHHHHHHHHHHHHHHHHHHHHhc-ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChH
Q 007565 376 -ALQFGDYVKSGGFLLGRTLAVLITMTLGTSMAARQ-GSDAMAAHQICMQVWLAVSLLTDALAASGQALIASYVSKGDFK 453 (598)
Q Consensus 376 -~~~~~~~lk~~~p~~~~~~~~~i~~~i~~~i~~~~-g~~~vaa~~i~~~i~~~~~~~~~~l~~a~~p~is~~~g~~~~~ 453 (598)
...+|+++++++|.........+...+|+.+++++ |+++++.|+.+.++......+..+++.+..|.+++...++|.+
T Consensus 208 ~~~~~~~~l~~~~p~~~~~~~~~l~~~~D~~~i~~~l~~~~vG~Y~~a~~i~~~~~~~~~~l~~~l~P~~s~~~~~~~~~ 287 (480)
T COG2244 208 SLALLKELLRFGLPLLLSSLLNFLFTNIDTLLLGLFLGPAQVGIYSAAQRLVSLLLIVASALNRVLFPALSRAYAEGDRK 287 (480)
T ss_pred hhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhHheecccccHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHH
Confidence 67899999999999999999999999999999876 8999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhccCCChHHHHHHHHHHHHHHhhhHHHHHHHHHHhHHhhcCchHHHHH
Q 007565 454 TVREITNFVLKIGVLTGVSLATILGLSFGSLAPLFTKDPKVLGIVGTGVLFVSASQPINALAFIFDGLHYGVSDFRYAAC 533 (598)
Q Consensus 454 ~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~l~~lf~~d~~v~~~~~~~l~i~~~~~~~~~~~~i~~~~l~~~g~~~~~~~ 533 (598)
+.++..++.+++...+++|..+++.++++++..++.+++ +..+...+.++++..++.++.......+++.|+++..++
T Consensus 288 ~~~~~~~~~~~~~~~~~~p~~~~l~~~~~~~i~~~fg~~--~~~~~~~l~il~~~~~~~~~~~~~~~~l~~~g~~~~~~~ 365 (480)
T COG2244 288 ALKKLLRQSLKLLLLISIPALLGLLLLAPPIITLLFGEK--YASAAPILQLLALAGLFLSLVSLTSSLLQALGKQRLLLL 365 (480)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhheeecCCc--ccchhHHHHHHHHHHHHHHHHHHHHHHHHHcCcchhhHH
Confidence 999999999999999999999999999999999998766 444888999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhccCCChHHHHHHHHH
Q 007565 534 SMMLVGAMSSTFLLYAPRATGLPGVWAGLTL 564 (598)
Q Consensus 534 ~~~~~~l~~~~~~~~l~~~~Gi~G~~~a~~i 564 (598)
...+..+.+..+++.+++.+|+.|+.++...
T Consensus 366 ~~~~~~i~~~~l~~~li~~~g~~g~~~a~~~ 396 (480)
T COG2244 366 ISLISALLNLILNLLLIPRFGLIGAAIATAS 396 (480)
T ss_pred HHHHHHHHHHHHHhHHHHhhhhhhHHHHHHH
Confidence 9999999999999999999999999999933
No 16
>PRK10189 MATE family multidrug exporter; Provisional
Probab=99.85 E-value=3.3e-19 Score=192.58 Aligned_cols=203 Identities=19% Similarity=0.156 Sum_probs=186.7
Q ss_pred chhhhhhHhhcHHHHHHHHHHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHH
Q 007565 376 ALQFGDYVKSGGFLLGRTLAVLITMTLGTSMAARQGSDAMAAHQICMQVWLAVSLLTDALAASGQALIASYVSKGDFKTV 455 (598)
Q Consensus 376 ~~~~~~~lk~~~p~~~~~~~~~i~~~i~~~i~~~~g~~~vaa~~i~~~i~~~~~~~~~~l~~a~~p~is~~~g~~~~~~~ 455 (598)
-..+|+++++++|.++++++..+...+++.+++++|++++|+++++.++..+...+..+++++..++++|++|++|++++
T Consensus 25 ~~~~k~il~la~P~~~~~~~~~~~~~vd~~~vg~lG~~alAA~~i~~~i~~~~~~~~~gl~~g~~~lvsq~~Ga~~~~~~ 104 (478)
T PRK10189 25 VLFWREITPLAVPIFIENLCVLLMGVLSTFLVSWLGKEAMAGVGLADSFNMVIMAFFAAIDLGTTVVVAFSLGKRDRRRA 104 (478)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHH
Confidence 34578999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhccC--CChHHHHHHHHHHHHHHhhhHHHHHHHHHHhHHhhcCchHHHHH
Q 007565 456 REITNFVLKIGVLTGVSLATILGLSFGSLAPLFT--KDPKVLGIVGTGVLFVSASQPINALAFIFDGLHYGVSDFRYAAC 533 (598)
Q Consensus 456 ~~~~~~~l~~~~~~~~~~~~~l~~~~~~l~~lf~--~d~~v~~~~~~~l~i~~~~~~~~~~~~i~~~~l~~~g~~~~~~~ 533 (598)
++..+.++.+++.++++.+++.+.+++++..+|. .|+|+.+.+..++++..++.++..+..++.+++++.||++.+++
T Consensus 105 ~~~~~~~l~~~~~~~~~~~~l~~~~~~~ll~l~~~~~~~~v~~~a~~Yl~i~~~~~~~~~~~~~~~~~lr~~G~~~~~~~ 184 (478)
T PRK10189 105 RAAARQSLVIMTLFAVLLAVLIHFFGEQIIDLVAGDATPEVKALALTYLELTVWSYPAAAITLIGSGALRGAGNTKIPLL 184 (478)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchHHhHH
Confidence 9999999999999999999999999999999995 68999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhc------cCCChHHHHHHHHHHHHHHHHHHHHHHH
Q 007565 534 SMMLVGAMSSTFLLYAP------RATGLPGVWAGLTLFMGLRTVAGFVRLL 578 (598)
Q Consensus 534 ~~~~~~l~~~~~~~~l~------~~~Gi~G~~~a~~i~~~v~~~~~~~~l~ 578 (598)
.+++..++++++.+.++ +++|+.|+|+|+.+++.+..++.++.+.
T Consensus 185 i~~~~~~~ni~l~~~li~g~~~~~~lGv~Gaa~At~is~~~~~~~~~~~~~ 235 (478)
T PRK10189 185 INGGMNILNIIISSILIYGLFSWQGLGFVGAGLGLTISRYIGAVAIIWVLM 235 (478)
T ss_pred HHHHHHHHHHHHhHHHHhcCCCCCccchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88887776665554443 3689999999999999998887766553
No 17
>PRK00187 multidrug efflux protein NorA; Provisional
Probab=99.84 E-value=6.6e-19 Score=190.02 Aligned_cols=205 Identities=16% Similarity=0.122 Sum_probs=186.8
Q ss_pred ccchhhhhhHhhcHHHHHHHHHHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChH
Q 007565 374 MGALQFGDYVKSGGFLLGRTLAVLITMTLGTSMAARQGSDAMAAHQICMQVWLAVSLLTDALAASGQALIASYVSKGDFK 453 (598)
Q Consensus 374 ~~~~~~~~~lk~~~p~~~~~~~~~i~~~i~~~i~~~~g~~~vaa~~i~~~i~~~~~~~~~~l~~a~~p~is~~~g~~~~~ 453 (598)
+++..+|++++.++|.++..+...+...+++.+++++|++++|+++++.++..+...+..+++++..++++|++|++|++
T Consensus 4 ~~~~~~k~il~~a~P~~~~~~~~~~~~~~d~~~v~~lg~~alAa~~i~~~i~~~~~~~~~gl~~~~~~i~aq~~Ga~~~~ 83 (464)
T PRK00187 4 PPTTELKAILRLAGPLIASQLAHMLMVFTDTLMMGRLGPEALAGGGLGAASYSFVSIFCVGVIAAVGTLVAIRHGAGDIE 83 (464)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChh
Confidence 45567899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhccCCChHHHHHHHHHHHHHHhhhHHHHHHHHHHhHHhhcCchHHHHH
Q 007565 454 TVREITNFVLKIGVLTGVSLATILGLSFGSLAPLFTKDPKVLGIVGTGVLFVSASQPINALAFIFDGLHYGVSDFRYAAC 533 (598)
Q Consensus 454 ~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~l~~lf~~d~~v~~~~~~~l~i~~~~~~~~~~~~i~~~~l~~~g~~~~~~~ 533 (598)
++++..+.++.+.++++++..+++. +.+++..+|..|+|+.+.+..++++..++.++..+...+.+.+++.||++.+++
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~il~l~~~~~ev~~~~~~Yl~i~~~~~~~~~l~~~~~~~l~~~g~~~~~~~ 162 (464)
T PRK00187 84 GATRLAQAGLWLAWLLALVAALLLW-NLKPLLLLFGQAPQNVDAAMQFLHLLPFALPGYLSFMALRGFTSALGRAGPVMV 162 (464)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHH
Confidence 9999999999999999998877765 678999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhcc------CCChHHHHHHHHHHHHHHHHHHHHHHHh
Q 007565 534 SMMLVGAMSSTFLLYAPR------ATGLPGVWAGLTLFMGLRTVAGFVRLLS 579 (598)
Q Consensus 534 ~~~~~~l~~~~~~~~l~~------~~Gi~G~~~a~~i~~~v~~~~~~~~l~~ 579 (598)
.+++..++++++.+.++. .+|+.|+++|+.++..+..++.++++++
T Consensus 163 ~~~~~~~~ni~~~~~lIfg~~g~p~~Gv~Gaalat~i~~~~~~~~~~~~~~~ 214 (464)
T PRK00187 163 ISLAGAVANLLLNYALIEGWFGLPKLGLMGIGLVTALVSNGMALALALYIRR 214 (464)
T ss_pred HHHHHHHHHHHHHHHHHcCCCCCccccccchHHHHHHHHHHHHHHHHHHHHh
Confidence 999988888877665443 4899999999999987777666555533
No 18
>COG0534 NorM Na+-driven multidrug efflux pump [Defense mechanisms]
Probab=99.84 E-value=4.9e-19 Score=189.58 Aligned_cols=207 Identities=17% Similarity=0.202 Sum_probs=196.6
Q ss_pred cchhhhhhHhhcHHHHHHHHHHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHH
Q 007565 375 GALQFGDYVKSGGFLLGRTLAVLITMTLGTSMAARQGSDAMAAHQICMQVWLAVSLLTDALAASGQALIASYVSKGDFKT 454 (598)
Q Consensus 375 ~~~~~~~~lk~~~p~~~~~~~~~i~~~i~~~i~~~~g~~~vaa~~i~~~i~~~~~~~~~~l~~a~~p~is~~~g~~~~~~ 454 (598)
.+...|+++++++|.++.++.......+|+.++++++++++|+-++++++..+...+..+++.+..+.++|++|++|+++
T Consensus 12 ~~~~~k~l~~la~P~i~~~l~~~l~~~vD~~~vG~~~~~alaav~la~~i~~~~~~~~~gl~~g~~~liaq~~Ga~~~~~ 91 (455)
T COG0534 12 FKKILKLLLKLAIPIILGNLLQTLYGLVDTFMVGHLGAEALAAVGLANPIFFLIIAIFIGLGTGTTVLVAQAIGAGDRKK 91 (455)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHcCCchHH
Confidence 44578999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhccCCChHHHHHHHHHHHHHHhhhHHHHHHHHHHhHHhhcCchHHHHHH
Q 007565 455 VREITNFVLKIGVLTGVSLATILGLSFGSLAPLFTKDPKVLGIVGTGVLFVSASQPINALAFIFDGLHYGVSDFRYAACS 534 (598)
Q Consensus 455 ~~~~~~~~l~~~~~~~~~~~~~l~~~~~~l~~lf~~d~~v~~~~~~~l~i~~~~~~~~~~~~i~~~~l~~~g~~~~~~~~ 534 (598)
+++...+++.++++++++..++...+++++..++..++|+.+.+.+|+.+..++.++..+..++.+++++.||+|.+++.
T Consensus 92 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ll~~l~~~~~v~~~a~~Yl~i~~~~~~~~~~~~~~~~~lr~~G~~~~~m~~ 171 (455)
T COG0534 92 AKRVLGQGLLLALLLGLLLAILLLFFAEPLLRLLGAPAEVLELAAEYLRIILLGAPFALLSFVLSGILRGLGDTKTPMYI 171 (455)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhHHH
Confidence 99999999999999999999999999999999999988899999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhccC----CChHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 007565 535 MMLVGAMSSTFLLYAPRA----TGLPGVWAGLTLFMGLRTVAGFVRLLSKS 581 (598)
Q Consensus 535 ~~~~~l~~~~~~~~l~~~----~Gi~G~~~a~~i~~~v~~~~~~~~l~~~~ 581 (598)
+++..+.++.+++.++.. +|+.|+++|+.+++.+.+++.++++.+++
T Consensus 172 ~~~~~~lNivln~llI~g~~g~lGv~GAA~AT~ia~~~~~~~~~~~~~~~~ 222 (455)
T COG0534 172 LLLGNLLNIVLNYLLIFGLFGGLGVAGAALATVIARWIGALLLLIYLLRKK 222 (455)
T ss_pred HHHHHHHHHHhhHHHHHhccccccchhHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 999999988887776654 89999999999999999999988886544
No 19
>PRK10367 DNA-damage-inducible SOS response protein; Provisional
Probab=99.83 E-value=2e-18 Score=184.70 Aligned_cols=204 Identities=10% Similarity=0.004 Sum_probs=188.4
Q ss_pred chhhhhhHhhcHHHHHHHHHHHHHHHHHHHHHHhc-ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHH
Q 007565 376 ALQFGDYVKSGGFLLGRTLAVLITMTLGTSMAARQ-GSDAMAAHQICMQVWLAVSLLTDALAASGQALIASYVSKGDFKT 454 (598)
Q Consensus 376 ~~~~~~~lk~~~p~~~~~~~~~i~~~i~~~i~~~~-g~~~vaa~~i~~~i~~~~~~~~~~l~~a~~p~is~~~g~~~~~~ 454 (598)
+.+.|+++|.++|.++.++...+...+|+.+++++ |++++|+.+++.++..+...+..+++.+..+.++|++|++|+++
T Consensus 5 ~~~~k~il~la~P~~~~~~~~~~~~~vd~~~vg~l~g~~alAa~~l~~~i~~~~~~~~~~~~~g~~~lvsq~~Ga~~~~~ 84 (441)
T PRK10367 5 TSSDKALWRLALPMIFSNITVPLLGLVDTAVIGHLDSPVYLGGVAVGATATSFLFMLLLFLRMSTTGLTAQAFGAKNPQA 84 (441)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHH
Confidence 45688999999999999999999999999999999 67799999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhccCCChHHHHHHHHHHHHHHhhhHHHHHHHHHHhHHhhcCchHHHHHH
Q 007565 455 VREITNFVLKIGVLTGVSLATILGLSFGSLAPLFTKDPKVLGIVGTGVLFVSASQPINALAFIFDGLHYGVSDFRYAACS 534 (598)
Q Consensus 455 ~~~~~~~~l~~~~~~~~~~~~~l~~~~~~l~~lf~~d~~v~~~~~~~l~i~~~~~~~~~~~~i~~~~l~~~g~~~~~~~~ 534 (598)
+++..++++.++++++++..+....+.+++..++..|+|+.+.+.+|+++..++.++..+..++.+++++.||++.+++.
T Consensus 85 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ll~~~g~~~~v~~~a~~Yl~i~~~~~~~~~~~~~~~~~lr~~G~~~~~~~~ 164 (441)
T PRK10367 85 LARALVQPLLLALGAGALIALLRTPLIDLALHIVGGSEAVLEQARRFLEIRWLSAPASLANLVLLGWLLGVQYARAPVIL 164 (441)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccchHHHHH
Confidence 99999999999999999999888889999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhc--cCCChHHHHHHHHHHHHHHHHHHHHHHHh
Q 007565 535 MMLVGAMSSTFLLYAP--RATGLPGVWAGLTLFMGLRTVAGFVRLLS 579 (598)
Q Consensus 535 ~~~~~l~~~~~~~~l~--~~~Gi~G~~~a~~i~~~v~~~~~~~~l~~ 579 (598)
+++..+++++++++++ ..+|+.|+++|+.+++++..++.++++.+
T Consensus 165 ~ii~~~vni~l~~~lI~~~~lGv~Gaa~At~is~~~~~i~~~~~~~~ 211 (441)
T PRK10367 165 LVVGNILNIVLDLWLVMGLHMNVQGAALATVIAEYATLLIGLLMVRK 211 (441)
T ss_pred HHHHHHHHHHHHHHHHHHcCCccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9988888777666554 47899999999999999888777666643
No 20
>PRK09575 vmrA multidrug efflux pump VmrA; Reviewed
Probab=99.82 E-value=3.2e-18 Score=184.28 Aligned_cols=205 Identities=13% Similarity=0.043 Sum_probs=189.7
Q ss_pred chhhhhhHhhcHHHHHHHHHHHHHHHHHHHHHHhc-ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHH
Q 007565 376 ALQFGDYVKSGGFLLGRTLAVLITMTLGTSMAARQ-GSDAMAAHQICMQVWLAVSLLTDALAASGQALIASYVSKGDFKT 454 (598)
Q Consensus 376 ~~~~~~~lk~~~p~~~~~~~~~i~~~i~~~i~~~~-g~~~vaa~~i~~~i~~~~~~~~~~l~~a~~p~is~~~g~~~~~~ 454 (598)
+...|++++.++|.+++++...+...+|+.+++++ |++++++++++.++..+...+..+++.+..++++|++|++|+++
T Consensus 8 ~~~~k~i~~l~~P~~~~~l~~~l~~~~d~~~lg~~~g~~~laa~~~~~~~~~~~~~~~~~~~~g~~~lvsq~~Ga~~~~~ 87 (453)
T PRK09575 8 QSIYRTFWRYTIPSIAAMLVNGLYQIVDGIFIGHYVGAEGLAGINMAWPVIGIILGIGLMVGMGTGSLLSIKRGEGDLEK 87 (453)
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHhcCCCHHH
Confidence 34678999999999999999999999999999996 99999999999999999998999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhccCCChHHHHHHHHHHHHHHhhhHHHHHHHHHHhHHhhcCchHHHHHH
Q 007565 455 VREITNFVLKIGVLTGVSLATILGLSFGSLAPLFTKDPKVLGIVGTGVLFVSASQPINALAFIFDGLHYGVSDFRYAACS 534 (598)
Q Consensus 455 ~~~~~~~~l~~~~~~~~~~~~~l~~~~~~l~~lf~~d~~v~~~~~~~l~i~~~~~~~~~~~~i~~~~l~~~g~~~~~~~~ 534 (598)
+++..+.++.++++++++.++++..+++++..+|..|+++.+.+..++++..++.++..+.....+++++.|+++.+++.
T Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~l~~~~~~~~~~~~~yl~i~~~~~~~~~l~~~~~~~l~~~g~~~~~~~~ 167 (453)
T PRK09575 88 AKRILTTGLLLLLLLGPIVSVILFLFADDFLRAQGAEGRTLELALQYIQVLIWGCLFTLGAIALPFLLRNDESPNLATGL 167 (453)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhc--cCCChHHHHHHHHHHHHHHHHHHHHHHHhc
Q 007565 535 MMLVGAMSSTFLLYAP--RATGLPGVWAGLTLFMGLRTVAGFVRLLSK 580 (598)
Q Consensus 535 ~~~~~l~~~~~~~~l~--~~~Gi~G~~~a~~i~~~v~~~~~~~~l~~~ 580 (598)
++...++++++.++++ +++|+.|+|+++.+++.+..++.+++++++
T Consensus 168 ~~~~~~~ni~l~~~li~~~~~Gi~Gaa~At~is~~~~~~~~~~~~~~~ 215 (453)
T PRK09575 168 MVIGALINIVLDYLFIGWLDWGLTGAAIATALAQLVVTVLGLGYFFSS 215 (453)
T ss_pred HHHHHHHHHHhhHHHHHhCCchhHHHHHHHHHHHHHHHHHHHHHHHCC
Confidence 8888787777766554 369999999999999999988877766443
No 21
>PRK01766 multidrug efflux protein; Reviewed
Probab=99.81 E-value=7.1e-18 Score=182.16 Aligned_cols=206 Identities=14% Similarity=0.072 Sum_probs=189.7
Q ss_pred ccchhhhhhHhhcHHHHHHHHHHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChH
Q 007565 374 MGALQFGDYVKSGGFLLGRTLAVLITMTLGTSMAARQGSDAMAAHQICMQVWLAVSLLTDALAASGQALIASYVSKGDFK 453 (598)
Q Consensus 374 ~~~~~~~~~lk~~~p~~~~~~~~~i~~~i~~~i~~~~g~~~vaa~~i~~~i~~~~~~~~~~l~~a~~p~is~~~g~~~~~ 453 (598)
..++.+|+++++++|..++.+...+...+++.+++++|++++++++++.++..+...+..+++.+..|.+++++|++|++
T Consensus 6 ~~~~~~~~il~~~~P~~~~~~~~~~~~~~d~~~i~~~g~~~laa~~~~~~~~~~~~~~~~g~~~a~~~~vs~~~g~~~~~ 85 (456)
T PRK01766 6 KYKSEARQLLALALPILLAQVAQTAMGFVDTVMAGGVSATDLAAVAIGTSIWLPVILFGHGLLLALTPIVAQLNGAGRRE 85 (456)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChH
Confidence 34557899999999999999999999999999999999999999999999988888889999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhccCCChHHHHHHHHHHHHHHhhhHHHHHHHHHHhHHhhcCchHHHHH
Q 007565 454 TVREITNFVLKIGVLTGVSLATILGLSFGSLAPLFTKDPKVLGIVGTGVLFVSASQPINALAFIFDGLHYGVSDFRYAAC 533 (598)
Q Consensus 454 ~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~l~~lf~~d~~v~~~~~~~l~i~~~~~~~~~~~~i~~~~l~~~g~~~~~~~ 533 (598)
++++..+.++.++++++++.+++++.+++++..+|..|+|+.+.+..++++..++.++..+..++.+.+++.||++.+++
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~yl~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~ 165 (456)
T PRK01766 86 RIAHQVRQGLWLALFLSVLIMLVLYNAVPPILNMMNLEPEVADIAVGYLHALLWGIPAYLLYQVLRSFIDGLGKTKPTMV 165 (456)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhc------cCCChHHHHHHHHHHHHHHHHHHHHHHHh
Q 007565 534 SMMLVGAMSSTFLLYAP------RATGLPGVWAGLTLFMGLRTVAGFVRLLS 579 (598)
Q Consensus 534 ~~~~~~l~~~~~~~~l~------~~~Gi~G~~~a~~i~~~v~~~~~~~~l~~ 579 (598)
.+.+..++++++.+.++ +.+|+.|+++++.+++++..++.++++++
T Consensus 166 ~~~i~~ivni~l~~~li~~~~~~~~~Gv~Gaa~at~is~~~~~~~~~~~~~~ 217 (456)
T PRK01766 166 IGFLGLLINIPLNYIFIYGKFGFPELGGVGCGVATAIVYWVMFLAMLIYIKR 217 (456)
T ss_pred HHHHHHHHHHHHHHHHHcCCCCCcccccccHHHHHHHHHHHHHHHHHHHHHh
Confidence 99888777777665554 45899999999999999988887776643
No 22
>TIGR01695 mviN integral membrane protein MviN. This model represents MviN, a family of integral membrane proteins predicted to have ten or more transmembrane regions. Although frequently listed as a virulence protein, it is not restricted to pathogens and it is an essential protein in Sinorhizobium meliloti. In a number of species its gene is adjacent to that of the uridylyltransferase GlnD, the signal-transducing enzyme that performs the key modification to the nitrogen regulatory protein PII.
Probab=99.73 E-value=1.6e-15 Score=166.08 Aligned_cols=210 Identities=20% Similarity=0.258 Sum_probs=187.1
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhccChhhhhhhhhHHHHHHHHHHHhhhhhhhHHHHHHHHHHHhhhhh
Q 007565 137 TQDAKNELIVLTLPAIAGQVIDPLAQLMETAYVGRLGSVELASAGVSISIFNIVSKLFNIPLLSVATSFVAEDIAKNLTK 216 (598)
Q Consensus 137 ~~~~~~~l~~~a~p~~~~~l~~~l~~~vd~~~vg~lg~~~laa~~~a~~i~~~~~~~~~~gl~~~~~~~va~~~~~~~~~ 216 (598)
+.+..|++++.++|..++++...+...+|..+.+.+|++++++++.+..+.++...++..++.++..|.+++.+++++
T Consensus 218 ~~~~~k~~l~~~~p~~~~~~~~~~~~~id~~~~~~~~~~~v~~~~~a~~l~~~~~~~~~~~i~~~~~P~~s~~~~~~~-- 295 (502)
T TIGR01695 218 RDPGLKRFLKLFLPTTLGSSASQITLLINTALASFLEIGSVSALYYANRIYQLPLGIFGISLSTVLLPKLSRHASEGN-- 295 (502)
T ss_pred CChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC--
Confidence 345679999999999999999999999999885559999999999999998887766666788899999999998876
Q ss_pred hhhhccCCCCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHchHHHHhhcCCCC--CccchhHHHHHHHHHHhhHH
Q 007565 217 DLAAGLEGNGKPPNGTTERKQLSSVSTALLLAVGIGIFEAAALSLASGPFLNLMGVPS--ASAMHGPAKKFLMLRALGSP 294 (598)
Q Consensus 217 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~i~~~~~~~~--~~~i~~~a~~yl~~~~~~~~ 294 (598)
+++.++.+.+++.+..+++++.+++++++++++.+++.+++ +++....+..++++++++.+
T Consensus 296 -----------------~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ii~l~~~~~~f~~~~~~~~~~~l~~~~~~~~ 358 (502)
T TIGR01695 296 -----------------WNELRDLLNQGIRLSLLLTIPSSFGLLILSIPIVSLLFERGAFSEEDTVMTATILAAYGLGLI 358 (502)
T ss_pred -----------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHH
Confidence 78889999999999999999999999999999999886543 33467788999999999999
Q ss_pred HHHHHHHHHHHHhccCCChhHHHHHHHHHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHHHHHHHHhhcc
Q 007565 295 AFVVSLALQGIFRGFKDTKTPVLCLGIGNLLAVFLFPILIYFCQLGMPGAAISTVVSQYIVAVTMIWFLNKKV 367 (598)
Q Consensus 295 ~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~l~~lli~~~~~Gi~Gaa~at~is~~~~~~~~~~~l~~~~ 367 (598)
+..+.......+++.||++.+++..++..++|++++++++. .+|+.|+++|+.+++.+..++..++++|+.
T Consensus 359 ~~~~~~~~~~~l~a~g~~~~~~~~~~~~~~i~i~l~~~l~~--~~G~~G~~~a~~i~~~~~~~~~~~~~~~~~ 429 (502)
T TIGR01695 359 FYSLQKVLLRAFYARKDTRTPFINSVISVVLNALLSLLLIF--PLGLVGIALATSAASMVSSVLLYLMLNRRL 429 (502)
T ss_pred HHHHHHHHHHhhHhccCCccCHHHHHHHHHHHHHHHHHHHH--HHhhhHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 99999999999999999999999999999999999999874 479999999999999999999988887654
No 23
>TIGR00797 matE putative efflux protein, MATE family. The MATE family consists of probable efflux proteins including a functionally characterized multi drug efflux system from Vibrio parahaemolyticus, a putative ethionine resistance protein of Saccharomyces cerevisiae, and the functionally uncharacterized DNA damage-inducible protein F (DinF) of E. coli. These proteins have 12 probable TMS.
Probab=99.71 E-value=3.8e-15 Score=154.56 Aligned_cols=192 Identities=14% Similarity=0.149 Sum_probs=174.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHH
Q 007565 388 FLLGRTLAVLITMTLGTSMAARQGSDAMAAHQICMQVWLAVSLLTDALAASGQALIASYVSKGDFKTVREITNFVLKIGV 467 (598)
Q Consensus 388 p~~~~~~~~~i~~~i~~~i~~~~g~~~vaa~~i~~~i~~~~~~~~~~l~~a~~p~is~~~g~~~~~~~~~~~~~~l~~~~ 467 (598)
|.++..++..+...+++.+++++|++++++++++.++..+...+..+++++..|.++++.|++|++++++..+..+.+.+
T Consensus 1 p~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~a~~i~~~~~~~~~~i~~~~~~~~s~~~g~~~~~~~~~~~~~~~~~~~ 80 (342)
T TIGR00797 1 PAILANILQPLLGLVDTAFVGHLGPVDLAAVSLGSSVFMFLFSILMGLGTATTALVAQAVGAGNYQRLGRQAQQSLLLAL 80 (342)
T ss_pred ChHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHhHHHHHHHHHHHHHHHHhHHHHHHHHHCCCChHHHHHHHHHHHHHHH
Confidence 67888999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhhhhhhccCCChHHHHHHHHHHHHHHhhhHHHHHHHHHHhHHhhcCchHHHHHHHHHHHHHHHHHHH
Q 007565 468 LTGVSLATILGLSFGSLAPLFTKDPKVLGIVGTGVLFVSASQPINALAFIFDGLHYGVSDFRYAACSMMLVGAMSSTFLL 547 (598)
Q Consensus 468 ~~~~~~~~~l~~~~~~l~~lf~~d~~v~~~~~~~l~i~~~~~~~~~~~~i~~~~l~~~g~~~~~~~~~~~~~l~~~~~~~ 547 (598)
+++++.++++.++++++..+|..|++..+.+..++++++++.++.++..+..+++++.||.+..++...+..++..++.+
T Consensus 81 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~i~~~~~~i~~~~ 160 (342)
T TIGR00797 81 LLGLPVLLVGYFFIDPLLSLMGADGEVAELAQDYLRILILGIPAYLLNFVLRGFLRGQGDTKTPMYITLIGNVINIILNY 160 (342)
T ss_pred HHHHHHHHHHHHhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHhH
Confidence 99999999999999999999987888888999999999999999999999999999999999999988887776665544
Q ss_pred hhcc---C-CChHHHHHHHHHHHHHHHHHHHHHHHh
Q 007565 548 YAPR---A-TGLPGVWAGLTLFMGLRTVAGFVRLLS 579 (598)
Q Consensus 548 ~l~~---~-~Gi~G~~~a~~i~~~v~~~~~~~~l~~ 579 (598)
.+.. + +|+.|++++..++.++..++.++.+++
T Consensus 161 ~li~~~~g~~g~~g~~~~~~~~~~~~~~~~~~~~~~ 196 (342)
T TIGR00797 161 ILIFGKFGFLGIVGAALATVISYWLMFLLLLYYIKK 196 (342)
T ss_pred HHHhcCccccccHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4433 4 669999999999999988887776643
No 24
>PF01943 Polysacc_synt: Polysaccharide biosynthesis protein; InterPro: IPR002797 Members of this family are integral membrane proteins [], and many are implicated in the production of polysaccharide. The family includes RfbX part of the O antigen biosynthesis operon [], and SpoVB from Bacillus subtilis (Q00758 from SWISSPROT), which is involved in spore cortex biosynthesis [].; GO: 0000271 polysaccharide biosynthetic process, 0016020 membrane
Probab=99.71 E-value=2.7e-14 Score=142.75 Aligned_cols=270 Identities=17% Similarity=0.231 Sum_probs=207.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHhc-cChhhhhhhhhHHHHHHHHHHHhhhhhhhHHHHHHHHHHHhhhhhhhhhccC
Q 007565 145 IVLTLPAIAGQVIDPLAQLMETAYVGR-LGSVELASAGVSISIFNIVSKLFNIPLLSVATSFVAEDIAKNLTKDLAAGLE 223 (598)
Q Consensus 145 ~~~a~p~~~~~l~~~l~~~vd~~~vg~-lg~~~laa~~~a~~i~~~~~~~~~~gl~~~~~~~va~~~~~~~~~~~~~~~~ 223 (598)
.|.+.-..+++++..+.+++...++.| +|++++|.++...++.+++..+...|+..+....+++...+
T Consensus 2 ~k~~~~~~~~~~~~~~~~~~~~~il~r~l~~~~~G~~~~~~~~~~~~~~~~~~G~~~~~~r~~~~~~~~----------- 70 (273)
T PF01943_consen 2 LKNSLWLFLSNILSALIGFITIPILARYLGPEEYGIYSLALSIVSLLSILADLGLSQAIVRFIAEYKDK----------- 70 (273)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHhHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhh-----------
Confidence 567777889999999999999999999 99999999999999999998887888777777666654221
Q ss_pred CCCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHchHHHHhhcCCCCCccchhHHHHHHHHHHhhHHHHHHHHHHH
Q 007565 224 GNGKPPNGTTERKQLSSVSTALLLAVGIGIFEAAALSLASGPFLNLMGVPSASAMHGPAKKFLMLRALGSPAFVVSLALQ 303 (598)
Q Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~i~~~~~~~~~~~i~~~a~~yl~~~~~~~~~~~l~~~~~ 303 (598)
++..+.+....+...++.+++...+ ..+...++.++. ...+........++........
T Consensus 71 ----------~~~~~~~~~~~~~~~~~~~~i~~~~-----~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~ 129 (273)
T PF01943_consen 71 ----------KELRSAYFSSVLFLLLIFSLIFLLI-----LLIASFFGNPSL------SLILIILALLILILSSLSSVFS 129 (273)
T ss_pred ----------HHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHcCCchH------HHHHHHHHHHHHHHHHHHHHHH
Confidence 1233444444444443333332222 222224443322 2223332233335788889999
Q ss_pred HHHhccCCChhHHHHHHHHHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHHHHHHHHhhccccCCCCccchhhhhhH
Q 007565 304 GIFRGFKDTKTPVLCLGIGNLLAVFLFPILIYFCQLGMPGAAISTVVSQYIVAVTMIWFLNKKVVLMPPKMGALQFGDYV 383 (598)
Q Consensus 304 ~~l~~~~~~~~~~~~~~~~~~~~i~l~~lli~~~~~Gi~Gaa~at~is~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l 383 (598)
.++++.++.+...+.+++..++.+++..+++.. ..++.+..++..++..+..++..++.+|+.+..+...++...|+++
T Consensus 130 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 208 (273)
T PF01943_consen 130 GLLQGLQRFKYIAISNIISSLLSLLLILLLLFL-GSSLWGFLLGLVISSLVSLIISLFYLRRKLRPRFSFFSKKFFKEIL 208 (273)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccchHHHHHHH
Confidence 999999999999999999999988777777654 4458999999999999999999988887654333444577899999
Q ss_pred hhcHHHHHHHHHHHHHHHHHHHHHHhc-ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 007565 384 KSGGFLLGRTLAVLITMTLGTSMAARQ-GSDAMAAHQICMQVWLAVSLLTDALAASGQALIASYV 447 (598)
Q Consensus 384 k~~~p~~~~~~~~~i~~~i~~~i~~~~-g~~~vaa~~i~~~i~~~~~~~~~~l~~a~~p~is~~~ 447 (598)
+++.|.....+...+...++..+++.+ |++++|.|+++.++......+..++.++..|.+++.+
T Consensus 209 ~~~~~~~~~~~~~~~~~~~d~~ii~~~~g~~~vg~Y~~a~~l~~~~~~~~~~~~~~~~P~~s~l~ 273 (273)
T PF01943_consen 209 RFGLPLFLSSLLSWLYSQIDRLIIGYFLGPEAVGIYSVAYRLASAISFLLSSISTVLFPRLSRLW 273 (273)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 999999999999999999999999886 8999999999999999999999999999999998753
No 25
>PF03023 MVIN: MviN-like protein; InterPro: IPR004268 This entry represents MviN, a family of integral membrane proteins predicted to have ten or more transmembrane regions. Although frequently listed as a virulence protein, it is not restricted to pathogens and it is an essential protein in Sinorhizobium meliloti. In a number of species its gene is adjacent to that of the uridylyltransferase GlnD, the signal-transducing enzyme that performs the key modification to the nitrogen regulatory protein PII []. Disruption of the MviN open reading frame results in flagellar structures that contain only the basal body and hook complex that lack the flagellum; suggesting that MviN might be involved in flagellin export or assembly []. Genome comparison studies led to MviN being predicted to be a peptidoglycan lipid II flippase though currently there is no direct evidence to support this annotation [].
Probab=99.68 E-value=3.1e-14 Score=152.67 Aligned_cols=210 Identities=20% Similarity=0.270 Sum_probs=190.1
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhccChhhhhhhhhHHHHHHHHHHHhhhhhhhHHHHHHHHHHHhhhhhh
Q 007565 138 QDAKNELIVLTLPAIAGQVIDPLAQLMETAYVGRLGSVELASAGVSISIFNIVSKLFNIPLLSVATSFVAEDIAKNLTKD 217 (598)
Q Consensus 138 ~~~~~~l~~~a~p~~~~~l~~~l~~~vd~~~vg~lg~~~laa~~~a~~i~~~~~~~~~~gl~~~~~~~va~~~~~~~~~~ 217 (598)
++..|++++...|.+++.....+..++|+.+.+.+++..+++++.+..+.++...++..++.++.-|.+++...++|
T Consensus 194 ~~~~~~~~~~~~p~~l~~~~~qi~~lv~~~laS~l~~G~vs~l~YA~~l~~lp~~i~~~~i~tv~~P~ls~~~~~~d--- 270 (451)
T PF03023_consen 194 DPNLKRFLKLAIPLLLSSSISQINILVDRALASFLGEGSVSALNYAQRLYQLPLGIFAVSISTVVFPKLSRLAAEGD--- 270 (451)
T ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC---
Confidence 44588999999999999999999999999999999999999999999999999988888888888888888777665
Q ss_pred hhhccCCCCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHchHHHHhhcC--CCCCccchhHHHHHHHHHHhhHHH
Q 007565 218 LAAGLEGNGKPPNGTTERKQLSSVSTALLLAVGIGIFEAAALSLASGPFLNLMG--VPSASAMHGPAKKFLMLRALGSPA 295 (598)
Q Consensus 218 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~i~~~~~--~~~~~~i~~~a~~yl~~~~~~~~~ 295 (598)
.++.++.+.+.+...+++.++.++.++.+++|+.+.+. +.-+.+-.+....++.+.++++|+
T Consensus 271 ----------------~~~~~~~~~~~l~~~~~i~iP~~~~~~~~a~~iV~llf~rG~F~~~~~~~ta~~l~~y~~~l~~ 334 (451)
T PF03023_consen 271 ----------------WEEFRKTLRKALRLILLILIPASIGLIVLAEPIVRLLFERGAFTAEDTQLTASALRIYALGLPF 334 (451)
T ss_pred ----------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHccCCCCHHHHHHHHHHHHHHHHHhHH
Confidence 78889999999999999999999999999999998775 333333467788999999999999
Q ss_pred HHHHHHHHHHHhccCCChhHHHHHHHHHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHHHHHHHHhhccc
Q 007565 296 FVVSLALQGIFRGFKDTKTPVLCLGIGNLLAVFLFPILIYFCQLGMPGAAISTVVSQYIVAVTMIWFLNKKVV 368 (598)
Q Consensus 296 ~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~l~~lli~~~~~Gi~Gaa~at~is~~~~~~~~~~~l~~~~~ 368 (598)
+.+...+...+.+++|+|.|++..+++.++|++++.+++. .+|+.|.++|+.++.++.+++++++++|+..
T Consensus 335 ~~l~~ll~r~fya~~~~~~~~~~~~~~~~lni~l~~~l~~--~~g~~Glala~sl~~~i~~~~l~~~l~r~~~ 405 (451)
T PF03023_consen 335 YALNDLLSRVFYALGDTKTPVRISVISVVLNIILSILLVP--FFGVAGLALATSLSAIISALLLYILLRRRLG 405 (451)
T ss_pred HHHHHHHHHHHHHccCcHhHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 9999999999999999999999999999999999988874 6899999999999999999999999987764
No 26
>COG0728 MviN Uncharacterized membrane protein, putative virulence factor [General function prediction only]
Probab=99.64 E-value=7.4e-13 Score=140.31 Aligned_cols=227 Identities=22% Similarity=0.250 Sum_probs=193.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhccChhhhhhhhhHHHHHHHHHHHhhhhhhhHHHHHHHHHHHhhhhhhh
Q 007565 139 DAKNELIVLTLPAIAGQVIDPLAQLMETAYVGRLGSVELASAGVSISIFNIVSKLFNIPLLSVATSFVAEDIAKNLTKDL 218 (598)
Q Consensus 139 ~~~~~l~~~a~p~~~~~l~~~l~~~vd~~~vg~lg~~~laa~~~a~~i~~~~~~~~~~gl~~~~~~~va~~~~~~~~~~~ 218 (598)
+..|++.+...|+.++...+.+..++|+.+.+.+.+...+.+..+..++++...+++.++.++.-|-+++...+++
T Consensus 229 ~~lk~~~~~~~p~~l~~sisQi~lli~~~iAS~l~~Gsis~l~YA~rl~qlPlGifgvai~tvllP~lSr~~~~~~---- 304 (518)
T COG0728 229 PGLKRFLKLMLPALLGVSISQINLLIDTAIASFLAEGSVSWLYYADRLYQLPLGIFGVALSTVLLPSLSRHAANGD---- 304 (518)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhcCC----
Confidence 5689999999999999999999999999999999999999999999999999999998888888888887765554
Q ss_pred hhccCCCCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHchHHHHhhcCCCCC--ccchhHHHHHHHHHHhhHHHH
Q 007565 219 AAGLEGNGKPPNGTTERKQLSSVSTALLLAVGIGIFEAAALSLASGPFLNLMGVPSA--SAMHGPAKKFLMLRALGSPAF 296 (598)
Q Consensus 219 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~i~~~~~~~~~--~~i~~~a~~yl~~~~~~~~~~ 296 (598)
.++..+..+.++.+++++.++.++.+..+++|+.+.+....+ ++-.......+....++++++
T Consensus 305 ---------------~~~~~~~l~~~i~l~lll~lP~~~~l~~la~piv~~Lf~rG~F~~~d~~~ta~~L~~y~~gL~~~ 369 (518)
T COG0728 305 ---------------WPEFLKLLDWGLRLTLLLTLPASAGLLVLAEPIVSLLFERGAFTAEDVLMTAEALAAYSLGLIPF 369 (518)
T ss_pred ---------------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHHhhHHH
Confidence 678889999999999999999999999999999987744322 122556778899999999999
Q ss_pred HHHHHHHHHHhccCCChhHHHHHHHHHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHHHHHHHHhhccccCCCCccc
Q 007565 297 VVSLALQGIFRGFKDTKTPVLCLGIGNLLAVFLFPILIYFCQLGMPGAAISTVVSQYIVAVTMIWFLNKKVVLMPPKMGA 376 (598)
Q Consensus 297 ~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~l~~lli~~~~~Gi~Gaa~at~is~~~~~~~~~~~l~~~~~~~~~~~~~ 376 (598)
.+..++...+.+++|+|+|+++.+++.++|++++++++ +.+|..|.|+++.++.++.+.++++.++|+....+ ...+
T Consensus 370 ~L~~ll~~~FYAr~d~ktP~~i~ii~~~~n~~l~~~l~--~~~~~~giala~s~a~~~~~~ll~~~l~k~~~~~~-~~~~ 446 (518)
T COG0728 370 ALVKLLSRVFYAREDTKTPMKIAIISLVVNILLNLLLI--PPLGHVGLALATSLAAWVNALLLYYLLRKRLVYLP-GRGW 446 (518)
T ss_pred HHHHHHHHHHHHccCCCcChHHHHHHHHHHHHHHHHHH--hhccchHHHHHHHHHHHHHHHHHHHHHHHhcCCCc-cchh
Confidence 99999999999999999999999999999999997766 46788889999999999999999999987765433 4444
Q ss_pred hhhhhhHhhcHH
Q 007565 377 LQFGDYVKSGGF 388 (598)
Q Consensus 377 ~~~~~~lk~~~p 388 (598)
..+. ..|..+-
T Consensus 447 ~~~~-~~k~~l~ 457 (518)
T COG0728 447 GLFL-ILKLLLA 457 (518)
T ss_pred hHHH-HHHHHHH
Confidence 4333 4444333
No 27
>PF01554 MatE: MatE; InterPro: IPR002528 Characterised members of the Multi Antimicrobial Extrusion (MATE) family function as drug/sodium antiporters. These proteins mediate resistance to a wide range of cationic dyes, fluroquinolones, aminoglycosides and other structurally diverse antibodies and drugs. MATE proteins are found in bacteria, archaea and eukaryotes. These proteins are predicted to have 12 alpha-helical transmembrane regions, some of the animal proteins may have an additional C-terminal helix. ; GO: 0015238 drug transmembrane transporter activity, 0015297 antiporter activity, 0006855 drug transmembrane transport, 0055085 transmembrane transport, 0016020 membrane; PDB: 3MKU_B 3MKT_B.
Probab=99.63 E-value=4.6e-16 Score=143.13 Aligned_cols=160 Identities=23% Similarity=0.332 Sum_probs=153.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHH
Q 007565 388 FLLGRTLAVLITMTLGTSMAARQGSDAMAAHQICMQVWLAVSLLTDALAASGQALIASYVSKGDFKTVREITNFVLKIGV 467 (598)
Q Consensus 388 p~~~~~~~~~i~~~i~~~i~~~~g~~~vaa~~i~~~i~~~~~~~~~~l~~a~~p~is~~~g~~~~~~~~~~~~~~l~~~~ 467 (598)
|..++.+...+.+.+++.+++++|++++++++++.++.++...+..+++++..+.+++++|++|++++++..+.++.+..
T Consensus 1 P~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~i~~~~~~~~~~~~~g~~~a~~~~~s~~~G~~~~~~~~~~~~~~~~~~~ 80 (162)
T PF01554_consen 1 PIALMQLLQVLGFIIDTIFVGRLGPEALAAYGIASSIFSILFMLIFGLATALQILISQNIGAGDYKRAKKVVRQGLLLSL 80 (162)
T ss_dssp HHHHHHHHHHHHHHHHHHCCHCCTTCCCCHCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCSSSTTTCCCHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhhhcccccccccceeecccccccccccccccccccccch
Confidence 78899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhhhhhhccCCChHHHHHHHHHHHHHHhhhHHHHHHHHHHhHHhhcCchHHHHHHHHHHH-HHHHHHH
Q 007565 468 LTGVSLATILGLSFGSLAPLFTKDPKVLGIVGTGVLFVSASQPINALAFIFDGLHYGVSDFRYAACSMMLVG-AMSSTFL 546 (598)
Q Consensus 468 ~~~~~~~~~l~~~~~~l~~lf~~d~~v~~~~~~~l~i~~~~~~~~~~~~i~~~~l~~~g~~~~~~~~~~~~~-l~~~~~~ 546 (598)
+++++.++++..+++++..+|+.|+|+.+.+.+++++..++.++..+.....+++++.||++..++..++.. ++.+++.
T Consensus 81 ~~~~~~~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~i~l~ 160 (162)
T PF01554_consen 81 IIGLLLSLVLLLFSEFILSLFGNDPEVIEIARQYLRIMAFSIPFFALFFVFSGILQGIGRTKIAMYISIISFWIINIPLA 160 (162)
T ss_dssp HHHHHHHHHHHHHHHCCHCTSSSTTCCHHHHHHHHCCHHHHHHHHHHHHHHCCCCGCCSTHCCCHHHHHHHHHHHHHHHH
T ss_pred hcccchhhhhhhHHHHHHHHhhhhHHHHHHhhccchhhhhHHHHHHHHHHHHHHHHHCCcHHHHHHHHHHHHHHHHHhHH
Confidence 999999999999999999999999999999999999999999999999999999999999999999988877 6666655
Q ss_pred H
Q 007565 547 L 547 (598)
Q Consensus 547 ~ 547 (598)
+
T Consensus 161 y 161 (162)
T PF01554_consen 161 Y 161 (162)
T ss_dssp H
T ss_pred h
Confidence 4
No 28
>TIGR02900 spore_V_B stage V sporulation protein B. SpoVB is the stage V sporulation protein B of the bacterial endopore formation program in Bacillus subtilis and various other Firmcutes. It is nearly universal among endospore-formers. Paralogs with rather high sequence similarity to SpoVB exist, including YkvU in B. subtilis and a number of proteins in the genus Clostridium. Member sequences for the seed alignment were chosen to select those proteins, no more than one to a genome, closest to B. subtilis SpoVB in a neighbor joining tree.
Probab=99.61 E-value=2.3e-13 Score=148.48 Aligned_cols=204 Identities=18% Similarity=0.260 Sum_probs=170.8
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhc-cChhh------hhhh----hhHHHHHHHHHHHhhhhhhhHHHHHH
Q 007565 138 QDAKNELIVLTLPAIAGQVIDPLAQLMETAYVGR-LGSVE------LASA----GVSISIFNIVSKLFNIPLLSVATSFV 206 (598)
Q Consensus 138 ~~~~~~l~~~a~p~~~~~l~~~l~~~vd~~~vg~-lg~~~------laa~----~~a~~i~~~~~~~~~~gl~~~~~~~v 206 (598)
++..|++++.++|.+++++...+...+|+.++++ +++.. .+.+ +++.++..+.. ....++..+..|.+
T Consensus 221 ~~~~k~l~~~~~p~~l~~~~~~~~~~~d~~ii~~~l~~~g~~~~~a~~~~g~~~~~a~~i~~~~~-~~~~~l~~~~~p~~ 299 (488)
T TIGR02900 221 KALLFDLFSVSLPLTLSRFIGSLLYFLETLLVPQRLVIAGVTYREATSLYGKLSGMAMPLLTFPA-VITSSLSTALVPDI 299 (488)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHChHHHHHHhHH-HHHHHHHHHHHHHH
Confidence 3468999999999999999999999999999998 54321 2222 23344555543 33446778889999
Q ss_pred HHHHHhhhhhhhhhccCCCCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHchHHHHhhcCCCCCccchhHHHHHH
Q 007565 207 AEDIAKNLTKDLAAGLEGNGKPPNGTTERKQLSSVSTALLLAVGIGIFEAAALSLASGPFLNLMGVPSASAMHGPAKKFL 286 (598)
Q Consensus 207 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~i~~~~~~~~~~~i~~~a~~yl 286 (598)
++..++++ +++.++.+.+.+.+..+++++.++++..+++++..++..+++ +..++
T Consensus 300 s~~~~~~~-------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~------~~~~l 354 (488)
T TIGR02900 300 SEAMAKKN-------------------YSSIEKRINQAIKISLLLGLITTVILLVIPDELGALFYGRPD------AGNFI 354 (488)
T ss_pred HHHHHcCC-------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCc------hHHHH
Confidence 99888776 778889999999999999999999999999999998874433 67899
Q ss_pred HHHHhhHHHHHHHHHHHHHHhccCCChhHHHHHHHHHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHHHHHHHHhhc
Q 007565 287 MLRALGSPAFVVSLALQGIFRGFKDTKTPVLCLGIGNLLAVFLFPILIYFCQLGMPGAAISTVVSQYIVAVTMIWFLNKK 366 (598)
Q Consensus 287 ~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~l~~lli~~~~~Gi~Gaa~at~is~~~~~~~~~~~l~~~ 366 (598)
.++++..++..+.....+++++.||++.+++..++..++|++++++++..+.+|+.|+++++++++++..++.+++.+|.
T Consensus 355 ~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~i~~i~l~~~l~~~~~~G~~Gaaia~~i~~~~~~~~~~~~~~~~ 434 (488)
T TIGR02900 355 RVLAPSFPFLYFSAPLQSILQGLGKQKVALRNSLIGAIVKIILLFVLTSIPSINIYGYAITFIITSVLVTILNLAEIKKN 434 (488)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999998855678999999999999999999998888654
Q ss_pred c
Q 007565 367 V 367 (598)
Q Consensus 367 ~ 367 (598)
.
T Consensus 435 ~ 435 (488)
T TIGR02900 435 I 435 (488)
T ss_pred h
Confidence 3
No 29
>PF01554 MatE: MatE; InterPro: IPR002528 Characterised members of the Multi Antimicrobial Extrusion (MATE) family function as drug/sodium antiporters. These proteins mediate resistance to a wide range of cationic dyes, fluroquinolones, aminoglycosides and other structurally diverse antibodies and drugs. MATE proteins are found in bacteria, archaea and eukaryotes. These proteins are predicted to have 12 alpha-helical transmembrane regions, some of the animal proteins may have an additional C-terminal helix. ; GO: 0015238 drug transmembrane transporter activity, 0015297 antiporter activity, 0006855 drug transmembrane transport, 0055085 transmembrane transport, 0016020 membrane; PDB: 3MKU_B 3MKT_B.
Probab=99.60 E-value=1.3e-15 Score=140.15 Aligned_cols=161 Identities=27% Similarity=0.396 Sum_probs=152.0
Q ss_pred HHHHHHHHHHHHHHHhHHHHhccChhhhhhhhhHHHHHHHHHHHhhhhhhhHHHHHHHHHHHhhhhhhhhhccCCCCCCC
Q 007565 150 PAIAGQVIDPLAQLMETAYVGRLGSVELASAGVSISIFNIVSKLFNIPLLSVATSFVAEDIAKNLTKDLAAGLEGNGKPP 229 (598)
Q Consensus 150 p~~~~~l~~~l~~~vd~~~vg~lg~~~laa~~~a~~i~~~~~~~~~~gl~~~~~~~va~~~~~~~~~~~~~~~~~~~~~~ 229 (598)
|.++.+++..+...+|+.+++++|++++++++++..+.+....+ ..|+..+..++++|++|++|
T Consensus 1 P~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~i~~~~~~~~~~~-~~g~~~a~~~~~s~~~G~~~--------------- 64 (162)
T PF01554_consen 1 PIALMQLLQVLGFIIDTIFVGRLGPEALAAYGIASSIFSILFML-IFGLATALQILISQNIGAGD--------------- 64 (162)
T ss_dssp HHHHHHHHHHHHHHHHHHCCHCCTTCCCCHCCHHHHHHHHHHHH-HHHHHHHHHHHHCCCCCSSS---------------
T ss_pred CHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhhh-cccccccccceeeccccccc---------------
Confidence 88999999999999999999999999999999999999998864 55899999999999998887
Q ss_pred CCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHchHHHHhhcCCCCCccchhHHHHHHHHHHhhHHHHHHHHHHHHHHhcc
Q 007565 230 NGTTERKQLSSVSTALLLAVGIGIFEAAALSLASGPFLNLMGVPSASAMHGPAKKFLMLRALGSPAFVVSLALQGIFRGF 309 (598)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~i~~~~~~~~~~~i~~~a~~yl~~~~~~~~~~~l~~~~~~~l~~~ 309 (598)
+++.++.++.++.+.++++++.+++++++.+++..+++.+++ +.+.+.+|+++..++.|+..+....++++++.
T Consensus 65 ----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~f~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 138 (162)
T PF01554_consen 65 ----YKRAKKVVRQGLLLSLIIGLLLSLVLLLFSEFILSLFGNDPE--VIEIARQYLRIMAFSIPFFALFFVFSGILQGI 138 (162)
T ss_dssp ----TTTCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCHCTSSSTTC--CHHHHHHHHCCHHHHHHHHHHHHHHCCCCGCC
T ss_pred ----ccccccccccccccchhcccchhhhhhhHHHHHHHHhhhhHH--HHHHhhccchhhhhHHHHHHHHHHHHHHHHHC
Confidence 788999999999999999999999999999999999988877 99999999999999999999999999999999
Q ss_pred CCChhHHHHHHHHH-HHHHHHHHH
Q 007565 310 KDTKTPVLCLGIGN-LLAVFLFPI 332 (598)
Q Consensus 310 ~~~~~~~~~~~~~~-~~~i~l~~l 332 (598)
||++.+++..++.. +++++++|+
T Consensus 139 g~~~~~~~~~~~~~~~~~i~l~yl 162 (162)
T PF01554_consen 139 GRTKIAMYISIISFWIINIPLAYL 162 (162)
T ss_dssp STHCCCHHHHHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHHHhHHhC
Confidence 99999999999999 999999875
No 30
>PRK10459 colanic acid exporter; Provisional
Probab=99.57 E-value=5.1e-12 Score=137.96 Aligned_cols=202 Identities=16% Similarity=0.089 Sum_probs=167.7
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhc-cChhhhhhhhhHHHHHHHHHHHhhhhhhhHHHHHHHHHHHhhhhh
Q 007565 138 QDAKNELIVLTLPAIAGQVIDPLAQLMETAYVGR-LGSVELASAGVSISIFNIVSKLFNIPLLSVATSFVAEDIAKNLTK 216 (598)
Q Consensus 138 ~~~~~~l~~~a~p~~~~~l~~~l~~~vd~~~vg~-lg~~~laa~~~a~~i~~~~~~~~~~gl~~~~~~~va~~~~~~~~~ 216 (598)
.+..|++++++.|.+.+++...++..+|++++|+ +|++++|.|+.+..+.+....++...+.....|..++. +++
T Consensus 203 ~~~~k~ll~~~~~~~~~~~~~~~~~~~d~~~lg~~lg~~~vG~Y~~A~~l~~~~~~~i~~~i~~v~~P~~s~~--~~~-- 278 (492)
T PRK10459 203 LASVKPNLSFGAWQTAERIINYLNTNIDTILIGRILGAEVLGGYNLAYNVATVPPMKINPIITRVAFPVFAKI--QDD-- 278 (492)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHhcCchhhhhHhhchHhhhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHh--cCC--
Confidence 3557999999999999999999999999999999 89999999999999887765444432333444444432 111
Q ss_pred hhhhccCCCCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHchHHHHhhcCCCCCccchhHHHHHHHHHHhhHHHH
Q 007565 217 DLAAGLEGNGKPPNGTTERKQLSSVSTALLLAVGIGIFEAAALSLASGPFLNLMGVPSASAMHGPAKKFLMLRALGSPAF 296 (598)
Q Consensus 217 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~i~~~~~~~~~~~i~~~a~~yl~~~~~~~~~~ 296 (598)
+++.++.+.+.+.+...++++.++++.++++|+...+.+++ +..+...+.++++...+.
T Consensus 279 -----------------~~~~~~~~~~~~~~~~~~~~p~~~~l~~~a~~ii~ll~g~~----~~~a~~~l~il~~~~~~~ 337 (492)
T PRK10459 279 -----------------TEKLRVGFLKLLSVLGIINFPLLLGLMVVSNNFVPLVFGEK----WNSAIPILQLLCIVGLLR 337 (492)
T ss_pred -----------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhcChh----HHhHHHHHHHHHHHHHHH
Confidence 56778888999999999999999999999999998876543 566889999999999999
Q ss_pred HHHHHHHHHHhccCCChhHHHHHHHHHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHHHHHHHHhhc
Q 007565 297 VVSLALQGIFRGFKDTKTPVLCLGIGNLLAVFLFPILIYFCQLGMPGAAISTVVSQYIVAVTMIWFLNKK 366 (598)
Q Consensus 297 ~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~l~~lli~~~~~Gi~Gaa~at~is~~~~~~~~~~~l~~~ 366 (598)
.+.......+++.||++.+++.+++.+++++...+++. ..+|+.|+++++++++.+..++.++++.|+
T Consensus 338 ~~~~~~~~~l~a~g~~~~~~~~~~~~~~~~i~~~~~~~--~~~G~~g~a~a~~i~~~~~~~~~~~~~~~~ 405 (492)
T PRK10459 338 SVGNPIGSLLLAKGRADLSFKWNVFKTFLFIPAIVIGG--QLAGLIGVALGFLLVQIINTILSYFLMIKP 405 (492)
T ss_pred HHHHHHHHHHHHcCccchhHHHHHHHHHHHHHHHHHHH--hhccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999998888887766665 357999999999999999999888888554
No 31
>PF13440 Polysacc_synt_3: Polysaccharide biosynthesis protein
Probab=99.50 E-value=4.5e-11 Score=118.07 Aligned_cols=246 Identities=16% Similarity=0.180 Sum_probs=178.4
Q ss_pred HHHHHhHHHHhc-cChhhhhhhhhHHHHHHHHHHHhhhhhhhHHHHHHHHHHHhhhhhhhhhccCCCCCCCCCcchHHHH
Q 007565 160 LAQLMETAYVGR-LGSVELASAGVSISIFNIVSKLFNIPLLSVATSFVAEDIAKNLTKDLAAGLEGNGKPPNGTTERKQL 238 (598)
Q Consensus 160 l~~~vd~~~vg~-lg~~~laa~~~a~~i~~~~~~~~~~gl~~~~~~~va~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (598)
..+++-..+++| +|++++|.++....+..++..+...|+...... . .+++ +++.+
T Consensus 2 ~~~f~~~~~lar~l~~~~~G~~~~~~s~~~~~~~~~~~g~~~~~~~----~-~~~~-------------------~~~~~ 57 (251)
T PF13440_consen 2 GINFLFLILLARYLGPEDFGIYALIFSIVSILSIVASLGLRQSLVR----S-AARD-------------------KQDIR 57 (251)
T ss_pred hHHHHHHHHHHHHCCHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH----h-hccC-------------------HHHHH
Confidence 356777888999 999999999999999998887766654333322 1 1111 34445
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHchHHHHhhcCCCCCccchhHHHHHHHHHHhhHHHHHHHHHHHHHHhccCCChhHHHH
Q 007565 239 SSVSTALLLAVGIGIFEAAALSLASGPFLNLMGVPSASAMHGPAKKFLMLRALGSPAFVVSLALQGIFRGFKDTKTPVLC 318 (598)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~l~~~~~~i~~~~~~~~~~~i~~~a~~yl~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~ 318 (598)
+.....+...++.+++..+ +...+..+++ +++ ...++....+..++..+....+..+++.+|.+.....
T Consensus 58 ~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~-~~~------~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 126 (251)
T PF13440_consen 58 SLLRFSLLVSLLLAVILAI----LAILIAYFFG-DPE------LFWLLLLLALAIFFSALSQLFRSILRARGRFRAYALI 126 (251)
T ss_pred HHHHHHHHHHHHHHHHHHH----HHHHHHHHhC-Chh------HHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHH
Confidence 5555555444444333322 2223333443 222 3445666777888889999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHHHHHHHHhhccccCCCCccchhhhhhHhhcHHHHHHHHHHHH
Q 007565 319 LGIGNLLAVFLFPILIYFCQLGMPGAAISTVVSQYIVAVTMIWFLNKKVVLMPPKMGALQFGDYVKSGGFLLGRTLAVLI 398 (598)
Q Consensus 319 ~~~~~~~~i~l~~lli~~~~~Gi~Gaa~at~is~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~lk~~~p~~~~~~~~~i 398 (598)
.++..++..++..++.+ .+.++.+..++..++..+..+..+...+++.+ .++ +...++.+|.+.|.....+..+.
T Consensus 127 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~---~~~~~~~~~~~~~~~~~~~~~~~ 201 (251)
T PF13440_consen 127 DIVRSLLRLLLLVLLLY-LGLNLWSILLAFIISALLALLISFYLLRRKLR-LSF---KFSWRRLLKYGLPFSLSSLLSWL 201 (251)
T ss_pred HHHHHHHHHHHHHHHHH-HHhhHHHHHHHHHHHHHHHHHHHHHHhccccC-CCc---hhhHHHHHHHHHHHHHHHHHHHH
Confidence 99998888555444444 34488899999999988887777665443322 222 22333479999999999999999
Q ss_pred HHHHHHHHHHh-cChhHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHH
Q 007565 399 TMTLGTSMAAR-QGSDAMAAHQICMQVWLAVS-LLTDALAASGQALIAS 445 (598)
Q Consensus 399 ~~~i~~~i~~~-~g~~~vaa~~i~~~i~~~~~-~~~~~l~~a~~p~is~ 445 (598)
...++..+++. +|++++|.|+++.++...+. ++..++++...|.+++
T Consensus 202 ~~~~~~~li~~~l~~~~~g~y~~a~~l~~~~~~~~~~~i~~~~~p~lar 250 (251)
T PF13440_consen 202 LSQIDRLLIGYFLGPEAVGIYSVAQRLASLPASLLSSAISSVFFPKLAR 250 (251)
T ss_pred HHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 99999999998 79999999999999999888 8899999999999876
No 32
>PRK15099 O-antigen translocase; Provisional
Probab=99.46 E-value=7.8e-12 Score=133.48 Aligned_cols=201 Identities=13% Similarity=-0.003 Sum_probs=169.1
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhc-cChhhhhhhhhHHHHHHHHHHHhhhhhhhHHHHHHHHHHHhhhh
Q 007565 137 TQDAKNELIVLTLPAIAGQVIDPLAQLMETAYVGR-LGSVELASAGVSISIFNIVSKLFNIPLLSVATSFVAEDIAKNLT 215 (598)
Q Consensus 137 ~~~~~~~l~~~a~p~~~~~l~~~l~~~vd~~~vg~-lg~~~laa~~~a~~i~~~~~~~~~~gl~~~~~~~va~~~~~~~~ 215 (598)
+++..|++++++.|.++.++..++...+|+.++++ +|++++|.|+.+..+.+.+..++..++..+..|.+++. ++
T Consensus 210 ~~~~~k~ll~~g~p~~~~~~~~~i~~~~~~~~l~~~~g~~~vg~y~~a~~i~~~~~~~~~~~~~~a~~P~~s~~---~~- 285 (416)
T PRK15099 210 DNGLAGQLGKFTLMALITSVTLPVAYVMMRNLLAAHYSWDEVGIWQGVSSISDAYLQFITASFSVYLLPTLSRL---TE- 285 (416)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc---CC-
Confidence 45568999999999999999999999999999985 99999999999999988665455667888899998874 22
Q ss_pred hhhhhccCCCCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHchHHHHhhcCCCCCccchhHHHHHHHHHHhhHHH
Q 007565 216 KDLAAGLEGNGKPPNGTTERKQLSSVSTALLLAVGIGIFEAAALSLASGPFLNLMGVPSASAMHGPAKKFLMLRALGSPA 295 (598)
Q Consensus 216 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~i~~~~~~~~~~~i~~~a~~yl~~~~~~~~~ 295 (598)
+++.++.+.+.+.....++++.+++++++++++..++.+++ ++.+.+++.+++++.++
T Consensus 286 ------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~l~a~~ii~l~~g~~----~~~~~~~~~~l~~~~~l 343 (416)
T PRK15099 286 ------------------KRDITREIVKALKFVLPAVAAASFTVWLLRDFAIWLLFSNK----FTAMRDLFAWQLVGDVL 343 (416)
T ss_pred ------------------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHH----HHHHHHHHHHHHHHHHH
Confidence 45566778888888888888888888899999999988664 44578899998888888
Q ss_pred HHHHHHHHHHHhccCCChhHHHHHHHHHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHHHHHHHHhh
Q 007565 296 FVVSLALQGIFRGFKDTKTPVLCLGIGNLLAVFLFPILIYFCQLGMPGAAISTVVSQYIVAVTMIWFLNK 365 (598)
Q Consensus 296 ~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~l~~lli~~~~~Gi~Gaa~at~is~~~~~~~~~~~l~~ 365 (598)
...+..+...+.+.++++......+...+++++++++++. .+|..|+++++.+++.+..++..+...+
T Consensus 344 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~i~l~~~li~--~~G~~G~a~a~~is~~~~~~~~~~~~~~ 411 (416)
T PRK15099 344 KVGAYVFGYLVIAKASLRFYILAEVSQFTLLTGFAHWLIP--LHGALGAAQAYMATYIVYFSLCCGVFLL 411 (416)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7777777777778888888889899889999999999885 5899999999999999999887766544
No 33
>COG2244 RfbX Membrane protein involved in the export of O-antigen and teichoic acid [General function prediction only]
Probab=99.42 E-value=5.2e-11 Score=129.62 Aligned_cols=199 Identities=21% Similarity=0.242 Sum_probs=168.2
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhc-cChhhhhhhhhHHHHHHHHHHHhhhhhhhHHHHHHHHHHHhhhhh
Q 007565 138 QDAKNELIVLTLPAIAGQVIDPLAQLMETAYVGR-LGSVELASAGVSISIFNIVSKLFNIPLLSVATSFVAEDIAKNLTK 216 (598)
Q Consensus 138 ~~~~~~l~~~a~p~~~~~l~~~l~~~vd~~~vg~-lg~~~laa~~~a~~i~~~~~~~~~~gl~~~~~~~va~~~~~~~~~ 216 (598)
++..|++++.++|..+..+...+.+.+|++++++ +|++++|.|+.+..+......+. ..+..+.-|.+++...+++
T Consensus 209 ~~~~~~~l~~~~p~~~~~~~~~l~~~~D~~~i~~~l~~~~vG~Y~~a~~i~~~~~~~~-~~l~~~l~P~~s~~~~~~~-- 285 (480)
T COG2244 209 LALLKELLRFGLPLLLSSLLNFLFTNIDTLLLGLFLGPAQVGIYSAAQRLVSLLLIVA-SALNRVLFPALSRAYAEGD-- 285 (480)
T ss_pred hHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhHheecccccHHHHHHHHHH-HHHHHHHHHHHHHHHHcCc--
Confidence 4678999999999999999999999999999999 99999999997777776666544 3677888888888876655
Q ss_pred hhhhccCCCCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHchHHHHhhcCCCCCccchhHHHHHHHHHHhhHHHH
Q 007565 217 DLAAGLEGNGKPPNGTTERKQLSSVSTALLLAVGIGIFEAAALSLASGPFLNLMGVPSASAMHGPAKKFLMLRALGSPAF 296 (598)
Q Consensus 217 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~i~~~~~~~~~~~i~~~a~~yl~~~~~~~~~~ 296 (598)
.++.++.+.+.+.+..+++++..+++..+++|+...+.+++. ..+...+.+++++.++.
T Consensus 286 -----------------~~~~~~~~~~~~~~~~~~~~p~~~~l~~~~~~~i~~~fg~~~----~~~~~~l~il~~~~~~~ 344 (480)
T COG2244 286 -----------------RKALKKLLRQSLKLLLLISIPALLGLLLLAPPIITLLFGEKY----ASAAPILQLLALAGLFL 344 (480)
T ss_pred -----------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhheeecCCcc----cchhHHHHHHHHHHHHH
Confidence 677778899999999999999999999999999988776642 33788899999999999
Q ss_pred HHHHHHHHHHhccCCChhHHHHHHHHHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHHHHHHHH
Q 007565 297 VVSLALQGIFRGFKDTKTPVLCLGIGNLLAVFLFPILIYFCQLGMPGAAISTVVSQYIVAVTMIWFL 363 (598)
Q Consensus 297 ~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~l~~lli~~~~~Gi~Gaa~at~is~~~~~~~~~~~l 363 (598)
.+.......+++.|+.+..++...++.++|++++++++. .+|..|+++++ .+.....+...+..
T Consensus 345 ~~~~~~~~~l~~~g~~~~~~~~~~~~~i~~~~l~~~li~--~~g~~g~~~a~-~~~~~~~~~~~~~~ 408 (480)
T COG2244 345 SLVSLTSSLLQALGKQRLLLLISLISALLNLILNLLLIP--RFGLIGAAIAT-ASVIALALLLFYIL 408 (480)
T ss_pred HHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHHhHHHH--hhhhhhHHHHH-HHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999994 68999999999 44333333333333
No 34
>KOG2864 consensus Nuclear division RFT1 protein [Cell cycle control, cell division, chromosome partitioning]
Probab=98.98 E-value=5.4e-06 Score=84.49 Aligned_cols=414 Identities=12% Similarity=0.065 Sum_probs=234.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhc-cChhhhhhhhhHHHHHHHHHHHhhhhhhhHHHHHHHHHHHhhhhhh
Q 007565 139 DAKNELIVLTLPAIAGQVIDPLAQLMETAYVGR-LGSVELASAGVSISIFNIVSKLFNIPLLSVATSFVAEDIAKNLTKD 217 (598)
Q Consensus 139 ~~~~~l~~~a~p~~~~~l~~~l~~~vd~~~vg~-lg~~~laa~~~a~~i~~~~~~~~~~gl~~~~~~~va~~~~~~~~~~ 217 (598)
+......+.+.-.+..+++..+.+++-..++-| ++++.+|..++-..+..-. .-+.++.--+....
T Consensus 5 ~vL~ss~~ga~~~i~~Q~~~RiiTF~lN~~liR~~s~~v~gi~nvrl~lL~sT------------iLFlsREair~A~l- 71 (530)
T KOG2864|consen 5 SVLESSFSGAVFSIRGQLLARIITFALNALLIRFLSPEVLGIVNVRLELLQST------------ILFLSREAIRLAEL- 71 (530)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHcChhheehhHHHHHHHHHH------------HHHhhHHHHHHHhc-
Confidence 345566777888889999999999998888888 9998887766544333222 22222221111100
Q ss_pred hhhccCCCCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHchHHHHhhcCCCCCccchhHHHHHHHHHHhhHHHHH
Q 007565 218 LAAGLEGNGKPPNGTTERKQLSSVSTALLLAVGIGIFEAAALSLASGPFLNLMGVPSASAMHGPAKKFLMLRALGSPAFV 297 (598)
Q Consensus 218 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~i~~~~~~~~~~~i~~~a~~yl~~~~~~~~~~~ 297 (598)
.+.++++.+..+..+....+..+...+.++...+ | +.+....++....+.-.....+...+...-.
T Consensus 72 -------~~gs~~~d~~te~~n~~wlS~~L~~~i~~~~i~~-w------l~~~~s~d~i~~~p~y~~~I~~~~~S~vvEL 137 (530)
T KOG2864|consen 72 -------RIGSEPADTWTEFINLLWLSVPLQTAINVACIYF-W------LGFLSSSDEISYSPLYAFAIFIIGLSIVVEL 137 (530)
T ss_pred -------cCCCCCCccHHHHHHhhhhhhhHHHHHHHHHHHH-H------HHHhhccchhhcCchHhHHHHHHHHHHHHHH
Confidence 0011111124444444444444444443332221 1 1111111110011222222233333333333
Q ss_pred HHHHHHHHHhccCCChhHHHHHHHHHHHH-HHHHHHHHhhc-CCChhHHHHHHHHHHHHHHH-HHHHHHhhccc--cC--
Q 007565 298 VSLALQGIFRGFKDTKTPVLCLGIGNLLA-VFLFPILIYFC-QLGMPGAAISTVVSQYIVAV-TMIWFLNKKVV--LM-- 370 (598)
Q Consensus 298 l~~~~~~~l~~~~~~~~~~~~~~~~~~~~-i~l~~lli~~~-~~Gi~Gaa~at~is~~~~~~-~~~~~l~~~~~--~~-- 370 (598)
+...+.-..|..-+.+.-.+...+..++. ++...+++.+. .+++..-|+|.........+ ..+.|++.++. ..
T Consensus 138 lsEp~~iv~Q~~~~~~~~~i~e~l~~~v~~i~~fa~lv~~~~~~~l~~FAlaql~~~itl~l~y~~~Yf~~~~s~~~~~~ 217 (530)
T KOG2864|consen 138 LSEPLYIVSQCGLKVQLRAIAEGLATIVKCIVLFAGLVMGPNMYALLAFALAQLAYAITLLLCYYWFYFYIRGSIPETEP 217 (530)
T ss_pred hcccHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCcccccc
Confidence 34444445555555666666666666666 44333444333 23444455555544444333 22333333331 00
Q ss_pred -------CCCcc-c---h-hhhhhHhhcHHHHHHHHHHHHHHHHHHHHHHhc---ChhHHHHHHHHHHHHHHHHHH-HHH
Q 007565 371 -------PPKMG-A---L-QFGDYVKSGGFLLGRTLAVLITMTLGTSMAARQ---GSDAMAAHQICMQVWLAVSLL-TDA 434 (598)
Q Consensus 371 -------~~~~~-~---~-~~~~~lk~~~p~~~~~~~~~i~~~i~~~i~~~~---g~~~vaa~~i~~~i~~~~~~~-~~~ 434 (598)
-|+.. + . -=++..|.........+..++.+.-+..+++.. +-.+-|.|.+++|.-++..=. ...
T Consensus 218 ~~r~Sdllpk~~~n~~~~ffd~d~~~~~~s~~~Qs~lKqlLTeGdkyvmt~~~~ls~~~QgvYd~v~n~GSLlaR~iF~P 297 (530)
T KOG2864|consen 218 FSRFSDLLPKVSENERGIFFDNDLLKLTKSFTFQSFLKQLLTEGDKYVMTFTELLSFGDQGVYDLVSNYGSLLARLIFRP 297 (530)
T ss_pred hhhhhhhccCCCCCCccccccHHHHHHHHHHHHHHHHHHHhhcccceeEeeeccCCcchhhHHHHHHhhhhHHHHHHhCh
Confidence 01110 0 0 113455655566666666677666665555533 455677888888876654443 345
Q ss_pred HHHHHHHHHHHHhcCCChHHHHHHH---HHHHHHHHHHHHHHHHHHHHhhhhhhhccCCChHHHHHHHHHHHHHHhhhHH
Q 007565 435 LAASGQALIASYVSKGDFKTVREIT---NFVLKIGVLTGVSLATILGLSFGSLAPLFTKDPKVLGIVGTGVLFVSASQPI 511 (598)
Q Consensus 435 l~~a~~p~is~~~g~~~~~~~~~~~---~~~l~~~~~~~~~~~~~l~~~~~~l~~lf~~d~~v~~~~~~~l~i~~~~~~~ 511 (598)
+--......++...+++.|+.|+.. ...++....+++.....-...++.+..++.++.-....+...++++++.+++
T Consensus 298 IEEss~~~FA~~ls~~~qe~~k~a~~vL~~lLklv~~igli~~~FG~~YS~~vL~lygG~kwss~~~~~lL~~YclYI~~ 377 (530)
T KOG2864|consen 298 IEESSYIYFARLLSRDNQENVKKAVDVLSNLLKLVIYIGLIFITFGPAYSYVVLLLYGGSKWSSGGGSLLLSWYCLYIPF 377 (530)
T ss_pred hHHHHHHHHHHHhhccchhhHHHHHHHHHHHHHHHHHHHHHHhhcCccccHHHHHHHcCccccCCCchHHHHHHHHHHHH
Confidence 6666777777777777766666644 4455555555555555555566667777755432233455789999999999
Q ss_pred HHHHHHHHhHHhhcCchHHHHH---HHHHHHHHHHHHHHhhccCCChHHHHHHHHHHHHHHHHHHHHHHHh
Q 007565 512 NALAFIFDGLHYGVSDFRYAAC---SMMLVGAMSSTFLLYAPRATGLPGVWAGLTLFMGLRTVAGFVRLLS 579 (598)
Q Consensus 512 ~~~~~i~~~~l~~~g~~~~~~~---~~~~~~l~~~~~~~~l~~~~Gi~G~~~a~~i~~~v~~~~~~~~l~~ 579 (598)
.+++.+.++.+.+..+.+.... .+++..++.....+++...+|..|..+|..+.+.++.+.....+++
T Consensus 378 lAiNGitEaF~~A~~t~~qi~~~n~~mlafSviflilsylL~~~~~~~GlIlANiiNm~lRIlys~~fI~~ 448 (530)
T KOG2864|consen 378 LAINGITEAFAFAVATSRQIDKHNKFMLAFSVIFLILSYLLIRWFGLVGLILANIINMSLRILYSLRFIRH 448 (530)
T ss_pred HHhccHHHHHHHHhccHHHHHhcccchhHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999887754 4445555555667777788999999999999999998888666644
No 35
>KOG1347 consensus Uncharacterized membrane protein, predicted efflux pump [General function prediction only]
Probab=98.90 E-value=7.1e-08 Score=103.23 Aligned_cols=202 Identities=10% Similarity=0.019 Sum_probs=179.2
Q ss_pred chhhhhhHhhcHHHHHHHHHHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhcCCChHH
Q 007565 376 ALQFGDYVKSGGFLLGRTLAVLITMTLGTSMAARQGSDAMAAHQICMQVWLA-VSLLTDALAASGQALIASYVSKGDFKT 454 (598)
Q Consensus 376 ~~~~~~~lk~~~p~~~~~~~~~i~~~i~~~i~~~~g~~~vaa~~i~~~i~~~-~~~~~~~l~~a~~p~is~~~g~~~~~~ 454 (598)
..+.|++++++.|..+..+.......+.+.+++++|+.++|+.++.++..+. -+.+..++..+..|.++|++|+++++.
T Consensus 24 ~~e~k~l~~ia~P~i~~~~~~~~~~~is~~f~GhlG~leLaa~sla~s~~n~~~~s~~~gl~~aletlcgQa~ga~~~~~ 103 (473)
T KOG1347|consen 24 VTESKELARLALPAILTFLAQPLLSLVSTAFAGHLGNLELASVSLANSFANITGVSILLGLQLALDTLCGQAFGAKKFTA 103 (473)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhccccchHHHHHHHHHHhhcccchHHhhccchhhhcchHhhhcccccch
Confidence 4567899999999999999999999999999999999999999999988776 455568899999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhccCCChHHHHHHHHHHHHHHhhhHHHHHHHHHHhHHhhcCchHHHHHH
Q 007565 455 VREITNFVLKIGVLTGVSLATILGLSFGSLAPLFTKDPKVLGIVGTGVLFVSASQPINALAFIFDGLHYGVSDFRYAACS 534 (598)
Q Consensus 455 ~~~~~~~~l~~~~~~~~~~~~~l~~~~~~l~~lf~~d~~v~~~~~~~l~i~~~~~~~~~~~~i~~~~l~~~g~~~~~~~~ 534 (598)
......++..+....++|.+.... +.+++...+..|+++...+..+.++..+..+.......+...+++.+++....++
T Consensus 104 lg~~lqrs~~~l~~~~~~~~~l~~-~~~~il~~lgq~~~i~~~a~~y~~~~ip~~~a~~~~~~l~~~lq~Q~~~~~~~~~ 182 (473)
T KOG1347|consen 104 LGVYLQRSGIVLLVQGLPISLLIL-NSEPILLLLGQDPDISRDAGSYAFMLIPGLFSYAVSFPLAKFLQAQSITLPLLVI 182 (473)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHH-ccHHHHHHhCCChhHHHHHhhhHhhhcchhhhhHHHHHHHHHHHhccCchHHHHH
Confidence 999999999999988888876554 5599999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHh--hccCCChHHHHHHHHHHHHHHHHHHHHHHH
Q 007565 535 MMLVGAMSSTFLLY--APRATGLPGVWAGLTLFMGLRTVAGFVRLL 578 (598)
Q Consensus 535 ~~~~~l~~~~~~~~--l~~~~Gi~G~~~a~~i~~~v~~~~~~~~l~ 578 (598)
.....++.+++.+. ..+++|..|+.++..+++.........+..
T Consensus 183 ~~~~~~lhi~~~~llv~~~~~g~~Gaala~~~s~w~~~~~l~~yi~ 228 (473)
T KOG1347|consen 183 GLVALVLHILLTWLLVSKLGLGIKGAALALVASYWLNVRILLLYAV 228 (473)
T ss_pred HHHHHHHHHHHHHHhhhcccCCCccchHHHHHHHHHHHHHHHHHhe
Confidence 98888876655544 456789999999999999888777777653
No 36
>PF04506 Rft-1: Rft protein; InterPro: IPR007594 Asymmetric lipid distribution is a fundamental characteristic of biological lipid bilayers, one such axample is the translocation of the Man5GlcNAc2-PP-Dol intermediate from the cytosolic side of the ER membrane to the lumen before the completion of the biosynthesis of Glc3Man9GlcNAc2-PP-Dol []. RFT1 encodes an evolutionarily conserved protein required for this translocation.; GO: 0005319 lipid transporter activity, 0006869 lipid transport, 0016021 integral to membrane
Probab=98.86 E-value=3.2e-06 Score=91.93 Aligned_cols=281 Identities=11% Similarity=0.010 Sum_probs=181.9
Q ss_pred HHHHHHHHhccCCChhHHHHHHHHHHHHHHHHHHHHhhc-CCCh-----h-HHHHHHHHHHHHHHHHHHHHH---hhcc-
Q 007565 299 SLALQGIFRGFKDTKTPVLCLGIGNLLAVFLFPILIYFC-QLGM-----P-GAAISTVVSQYIVAVTMIWFL---NKKV- 367 (598)
Q Consensus 299 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~l~~lli~~~-~~Gi-----~-Gaa~at~is~~~~~~~~~~~l---~~~~- 367 (598)
....+..+.-.-+.+....+..+..+++..+..+..... +++. . -+.++..+++....+...... ....
T Consensus 152 ~il~Q~~l~~~~Rv~~E~~A~~~k~i~t~~~v~~~~~~~~~~~~~~~~~~~~~~l~Falgq~~ys~~l~~~y~~~~~~~~ 231 (549)
T PF04506_consen 152 YILAQQMLFFKLRVKAESLAVFAKCIVTFALVVLAERSGYGFFYFLSGQEGLAILAFALGQLAYSITLFFCYYWMYFFPF 231 (549)
T ss_pred HHHHHHHhhhheeeEechHHHHHHHHHHHHHHHHHHhcccceeeeeccchhHHHHHHHHHHHHHHHHHHhhHHhhccCcc
Confidence 344466666666777777777766666655544442210 1111 1 123444555554443322211 1111
Q ss_pred c---cCCCCccc-----h-hhhhhHhhcHHHHHHHHHHHHHHHHHHHHHHh--c-ChhHHHHHHHHHHHHHHHHHHH-HH
Q 007565 368 V---LMPPKMGA-----L-QFGDYVKSGGFLLGRTLAVLITMTLGTSMAAR--Q-GSDAMAAHQICMQVWLAVSLLT-DA 434 (598)
Q Consensus 368 ~---~~~~~~~~-----~-~~~~~lk~~~p~~~~~~~~~i~~~i~~~i~~~--~-g~~~vaa~~i~~~i~~~~~~~~-~~ 434 (598)
. ...++... . --++.++.........+...+.++-+..+++. + ..++-+.|++++|+-++..=+. ..
T Consensus 232 ~~~s~~lp~i~~~~~~~~~fd~~~l~l~~~~~~Qsi~K~lLTEGdk~vl~~~~~~t~~~QGvY~lv~N~GSLvaR~lF~P 311 (549)
T PF04506_consen 232 KSFSDLLPKISSGNPKSYYFDRDLLSLTWSFFFQSILKHLLTEGDKLVLSFFNLLTFEDQGVYALVSNYGSLVARLLFQP 311 (549)
T ss_pred cchhhccccccccccccccCCHHHHHHHHHHHHHHHHHHHHhhCCeEEEEeeccCCHHHhhHHHHHhhHHHHHHHHHhCc
Confidence 0 11122111 1 12577888888899999999999999888877 4 6889999999999977654332 34
Q ss_pred HHHHHHHHHHHHhcCCCh---------HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhccCCChHHHHHHHHHHHHH
Q 007565 435 LAASGQALIASYVSKGDF---------KTVREITNFVLKIGVLTGVSLATILGLSFGSLAPLFTKDPKVLGIVGTGVLFV 505 (598)
Q Consensus 435 l~~a~~p~is~~~g~~~~---------~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~l~~lf~~d~~v~~~~~~~l~i~ 505 (598)
+=-+.....++...+++. +++.+.....+++...+++.+...-...++.+.+++.++.-....+...++.+
T Consensus 312 iEEs~~~~Fsk~l~~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~gl~~~~fG~~~s~~lL~~~~g~~w~~~~~~~~l~~y 391 (549)
T PF04506_consen 312 IEESSRLYFSKLLSRDNSKKKQPQESLKQAANVLSNLLKFYLYLGLVIVAFGPPYSPLLLRLLGGSRWSSTSAPSLLRAY 391 (549)
T ss_pred HHHHHHHHHHHHhcccCchhhccchhHHHHHHHHHHHHHHHHHHHHHHHHhChhhHHHHHHHHhhhcccCCCchHHHHHH
Confidence 555555566666554432 44666677777777777777777667777777777755433233457889999
Q ss_pred HhhhHHHHHHHHHHhHHhhcCchHHHHH---HHHHHHHHHHHHHHhhcc-CCChHHHHHHHHHHHHHHHHHHHHHHHh
Q 007565 506 SASQPINALAFIFDGLHYGVSDFRYAAC---SMMLVGAMSSTFLLYAPR-ATGLPGVWAGLTLFMGLRTVAGFVRLLS 579 (598)
Q Consensus 506 ~~~~~~~~~~~i~~~~l~~~g~~~~~~~---~~~~~~l~~~~~~~~l~~-~~Gi~G~~~a~~i~~~v~~~~~~~~l~~ 579 (598)
+..+++.+++.+.+...++..+.+.... .+.+..++.....+.+.. .+|..|..+|..+.+.++.+..++++++
T Consensus 392 c~yi~~la~NGi~EaF~~s~a~~~~l~~~~~~m~~~S~~f~~~~~~l~~~~~G~~GlI~AN~iNM~lRI~ys~~fI~~ 469 (549)
T PF04506_consen 392 CYYIPFLAINGITEAFVFSVASESQLDRYNYWMVVFSAIFLAASYLLTRWGLGAVGLILANCINMSLRIIYSLRFIRR 469 (549)
T ss_pred HHHHHHHHHccHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999876643 223333333344455555 5999999999999999999998888754
No 37
>PF07260 ANKH: Progressive ankylosis protein (ANKH); InterPro: IPR009887 This family consists of several progressive ankylosis protein (ANK or ANKH) sequences. The ANK protein spans the outer cell membrane and shuttles inorganic pyrophosphate (PPi), a major inhibitor of physiologic and pathologic calcification, bone mineralisation and bone resorption []. Mutations in ANK are thought to give rise to Craniometaphyseal dysplasia (CMD) which is a rare skeletal disorder characterised by progressive thickening and increased mineral density of craniofacial bones and abnormally developed metaphyses in long bones [].; GO: 0015114 phosphate ion transmembrane transporter activity, 0035435 phosphate ion transmembrane transport, 0016021 integral to membrane
Probab=98.68 E-value=3.2e-05 Score=75.77 Aligned_cols=257 Identities=14% Similarity=0.090 Sum_probs=153.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhccCh---hhhhhhhhHHHHHHHHHHHhhhhhhhHHHHHHHHHHHhhhh
Q 007565 139 DAKNELIVLTLPAIAGQVIDPLAQLMETAYVGRLGS---VELASAGVSISIFNIVSKLFNIPLLSVATSFVAEDIAKNLT 215 (598)
Q Consensus 139 ~~~~~l~~~a~p~~~~~l~~~l~~~vd~~~vg~lg~---~~laa~~~a~~i~~~~~~~~~~gl~~~~~~~va~~~~~~~~ 215 (598)
.-++++.++-+|..++.++..+.-.+-+.-++|-.+ +.+|+|+++..+.-++..... .+-.+... +++.+
T Consensus 8 ~~y~~li~F~iPLa~ts~~~dl~~qiiNagLAr~~e~~vetLAsfglA~sL~lf~~sp~~-~~~~igl~-----~V~s~- 80 (345)
T PF07260_consen 8 TSYWPLIRFFIPLAITSLAMDLGEQIINAGLARVQEDPVETLASFGLAYSLMLFFASPLS-MFHHIGLV-----FVNSK- 80 (345)
T ss_pred chHHHHHHHHHHHHHHHHHHhccHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHhChhh-hhHHHHHH-----Hhcch-
Confidence 347889999999999999988888877777877322 239999999988776654322 12222222 33322
Q ss_pred hhhhhccCCCCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHH-HHHHchHHHH-hhcCCCCCccchhHHHHHHHHHHhhH
Q 007565 216 KDLAAGLEGNGKPPNGTTERKQLSSVSTALLLAVGIGIFEAA-ALSLASGPFL-NLMGVPSASAMHGPAKKFLMLRALGS 293 (598)
Q Consensus 216 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~~~~~i~-~~~~~~~~~~i~~~a~~yl~~~~~~~ 293 (598)
+++.+. +......+.+...+..+ ..-.+...++ ..++.+++ +.+.+...+.++.+--
T Consensus 81 ------------------rsrr~~-vl~~~vag~v~avi~~LIa~TpLG~~li~~lhgVs~~--va~~tr~a~l~L~llP 139 (345)
T PF07260_consen 81 ------------------RSRRKA-VLCMAVAGAVAAVIHLLIAWTPLGNYLINDLHGVSPS--VAEKTRRAFLYLTLLP 139 (345)
T ss_pred ------------------hhhHHH-HHHHHHHHHHHHHHHHHHHhCchHHHHHHHHhCCCHH--HHHHHHHHHHHHHHHH
Confidence 122111 11111222222111111 1222233333 46677766 8888999999888888
Q ss_pred HHHHHHHHHHHHHhccCCChhHHHHHHHHHHHHHHHHHHHHhhc-C------CChhHHHHHHHHHHHHHHHHHHHHHhhc
Q 007565 294 PAFVVSLALQGIFRGFKDTKTPVLCLGIGNLLAVFLFPILIYFC-Q------LGMPGAAISTVVSQYIVAVTMIWFLNKK 366 (598)
Q Consensus 294 ~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~l~~lli~~~-~------~Gi~Gaa~at~is~~~~~~~~~~~l~~~ 366 (598)
++.++....+|++-=.+++......++...+..+++..+++... + .++.|.-.+..+=..+.++.+++.+..+
T Consensus 140 fl~alr~~~qGILik~r~s~iV~~aSI~~v~~qvV~v~~ll~~~l~~~~pllipil~~y~g~~vr~t~v~LGy~~~i~~~ 219 (345)
T PF07260_consen 140 FLDALRWIHQGILIKHRHSWIVGSASIADVIAQVVLVAILLSMHLEPQDPLLIPILALYAGIAVRFTIVCLGYYQSIHDI 219 (345)
T ss_pred HHHHHHHHHhhHhhhccceeEeehHHHHHHHHHHHHHHHHHccccCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 88999999999998777777777777776666666665665321 1 1222221111111111122222223332
Q ss_pred cccCCC--CccchhhhhhHhhcHHHHHHHHHHHHHHHHHHHHHHh-cC-----hhHHHHHHHHHH
Q 007565 367 VVLMPP--KMGALQFGDYVKSGGFLLGRTLAVLITMTLGTSMAAR-QG-----SDAMAAHQICMQ 423 (598)
Q Consensus 367 ~~~~~~--~~~~~~~~~~lk~~~p~~~~~~~~~i~~~i~~~i~~~-~g-----~~~vaa~~i~~~ 423 (598)
.+.... +-+...+++++++.+|++.......+.--+.+.++++ +| ++++|...+.+.
T Consensus 220 ~p~~~~~~~~~~~tl~~~l~F~~PL~~~~~tq~~SrplVnl~vsR~l~gs~a~~~avavl~~~yp 284 (345)
T PF07260_consen 220 IPQLSGLEKGDSATLQRMLKFWWPLALVLATQRISRPLVNLFVSRDLSGSQAATEAVAVLTATYP 284 (345)
T ss_pred ccccCCcccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCcccchhhhhhhccccC
Confidence 222211 2344578899999999999999999999999999998 43 355555444333
No 38
>PF14667 Polysacc_synt_C: Polysaccharide biosynthesis C-terminal domain
Probab=98.53 E-value=6.3e-06 Score=74.07 Aligned_cols=80 Identities=31% Similarity=0.486 Sum_probs=74.9
Q ss_pred HHHHHhhHHHHHHHHHHHHHHhccCCChhHHHHHHHHHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHHHHHHHHhh
Q 007565 286 LMLRALGSPAFVVSLALQGIFRGFKDTKTPVLCLGIGNLLAVFLFPILIYFCQLGMPGAAISTVVSQYIVAVTMIWFLNK 365 (598)
Q Consensus 286 l~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~l~~lli~~~~~Gi~Gaa~at~is~~~~~~~~~~~l~~ 365 (598)
+++++++.++..+.......+++.||++..++..+++.++|++++++++ +.+|..|+++|+.+++.+..++..++.+|
T Consensus 2 l~il~~~~~~~~l~~~~~~il~~~~k~~~~~~~~~~~~~v~i~~~~~li--~~~G~~Gaa~a~~i~~~~~~~~~~~~~~k 79 (146)
T PF14667_consen 2 LQILALAIIFMGLSQPLGSILQAMGKTKWPFIITLIGAIVNIILNYILI--PRFGIYGAAIATAISEIVSFILNLWYVRK 79 (146)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHH--HHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5778899999999999999999999999999999999999999999997 46899999999999999999999999887
Q ss_pred cc
Q 007565 366 KV 367 (598)
Q Consensus 366 ~~ 367 (598)
+.
T Consensus 80 ~~ 81 (146)
T PF14667_consen 80 KI 81 (146)
T ss_pred Hh
Confidence 65
No 39
>PF04506 Rft-1: Rft protein; InterPro: IPR007594 Asymmetric lipid distribution is a fundamental characteristic of biological lipid bilayers, one such axample is the translocation of the Man5GlcNAc2-PP-Dol intermediate from the cytosolic side of the ER membrane to the lumen before the completion of the biosynthesis of Glc3Man9GlcNAc2-PP-Dol []. RFT1 encodes an evolutionarily conserved protein required for this translocation.; GO: 0005319 lipid transporter activity, 0006869 lipid transport, 0016021 integral to membrane
Probab=98.22 E-value=0.00018 Score=78.43 Aligned_cols=216 Identities=12% Similarity=0.116 Sum_probs=170.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhc--c-ChhhhhhhhhHHHHHHHHHHHhhhhhhhHHHHHHHHHHHhhhhh
Q 007565 140 AKNELIVLTLPAIAGQVIDPLAQLMETAYVGR--L-GSVELASAGVSISIFNIVSKLFNIPLLSVATSFVAEDIAKNLTK 216 (598)
Q Consensus 140 ~~~~l~~~a~p~~~~~l~~~l~~~vd~~~vg~--l-g~~~laa~~~a~~i~~~~~~~~~~gl~~~~~~~va~~~~~~~~~ 216 (598)
..+++++++.......++-.+++--|.+++.. + ..++.|.|++++++-+++.-++-.++--..-.+.++...+++.+
T Consensus 251 fd~~~l~l~~~~~~Qsi~K~lLTEGdk~vl~~~~~~t~~~QGvY~lv~N~GSLvaR~lF~PiEEs~~~~Fsk~l~~~~~~ 330 (549)
T PF04506_consen 251 FDRDLLSLTWSFFFQSILKHLLTEGDKLVLSFFNLLTFEDQGVYALVSNYGSLVARLLFQPIEESSRLYFSKLLSRDNSK 330 (549)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHhhCCeEEEEeeccCCHHHhhHHHHHhhHHHHHHHHHhCcHHHHHHHHHHHHhcccCch
Confidence 35789999999999999999999999999988 4 55789999999999999887777677666667777776554322
Q ss_pred hhhhccCCCCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHchHHHHhhcCCCCCccchhHHHHHHHHHHhhHHHH
Q 007565 217 DLAAGLEGNGKPPNGTTERKQLSSVSTALLLAVGIGIFEAAALSLASGPFLNLMGVPSASAMHGPAKKFLMLRALGSPAF 296 (598)
Q Consensus 217 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~i~~~~~~~~~~~i~~~a~~yl~~~~~~~~~~ 296 (598)
++ .+++ ..++..+.+...+.+...+|+++.......++.++.+++++.= ....+...+++.+..+|+.
T Consensus 331 ~~---------~~~~-~~~~~~~~l~~ll~~~~~~gl~~~~fG~~~s~~lL~~~~g~~w--~~~~~~~~l~~yc~yi~~l 398 (549)
T PF04506_consen 331 KK---------QPQE-SLKQAANVLSNLLKFYLYLGLVIVAFGPPYSPLLLRLLGGSRW--SSTSAPSLLRAYCYYIPFL 398 (549)
T ss_pred hh---------ccch-hHHHHHHHHHHHHHHHHHHHHHHHHhChhhHHHHHHHHhhhcc--cCCCchHHHHHHHHHHHHH
Confidence 21 0111 1567788888999999999998888888888889988865432 2344678889999999999
Q ss_pred HHHHHHHHHHhccCCChhHHHH---HHHHHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHHHHHHHHhhccc
Q 007565 297 VVSLALQGIFRGFKDTKTPVLC---LGIGNLLAVFLFPILIYFCQLGMPGAAISTVVSQYIVAVTMIWFLNKKVV 368 (598)
Q Consensus 297 ~l~~~~~~~l~~~~~~~~~~~~---~~~~~~~~i~l~~lli~~~~~Gi~Gaa~at~is~~~~~~~~~~~l~~~~~ 368 (598)
+++.+..++.++....+..... .++..++.++.+++|+.. ++|..|..+|.++.+.+-.+..++++++..+
T Consensus 399 a~NGi~EaF~~s~a~~~~l~~~~~~m~~~S~~f~~~~~~l~~~-~~G~~GlI~AN~iNM~lRI~ys~~fI~~~~~ 472 (549)
T PF04506_consen 399 AINGITEAFVFSVASESQLDRYNYWMVVFSAIFLAASYLLTRW-GLGAVGLILANCINMSLRIIYSLRFIRRYFR 472 (549)
T ss_pred HHccHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHhc-cCCCchHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999998877654444 444556667778888876 7999999999999999999999999876543
No 40
>PF01943 Polysacc_synt: Polysaccharide biosynthesis protein; InterPro: IPR002797 Members of this family are integral membrane proteins [], and many are implicated in the production of polysaccharide. The family includes RfbX part of the O antigen biosynthesis operon [], and SpoVB from Bacillus subtilis (Q00758 from SWISSPROT), which is involved in spore cortex biosynthesis [].; GO: 0000271 polysaccharide biosynthetic process, 0016020 membrane
Probab=98.14 E-value=0.001 Score=66.08 Aligned_cols=186 Identities=18% Similarity=0.232 Sum_probs=114.4
Q ss_pred HhhcHHHHHHHHHHHHHHHHHHHHHHh-cChhHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhcCCChHHHHHHHH
Q 007565 383 VKSGGFLLGRTLAVLITMTLGTSMAAR-QGSDAMAAHQICMQVWLAVSLL-TDALAASGQALIASYVSKGDFKTVREITN 460 (598)
Q Consensus 383 lk~~~p~~~~~~~~~i~~~i~~~i~~~-~g~~~vaa~~i~~~i~~~~~~~-~~~l~~a~~p~is~~~g~~~~~~~~~~~~ 460 (598)
+|.............+...+...++++ +|+++.+.|+....+.++...+ ..|+.++..-.+++...+ .++.+....
T Consensus 2 ~k~~~~~~~~~~~~~~~~~~~~~il~r~l~~~~~G~~~~~~~~~~~~~~~~~~G~~~~~~r~~~~~~~~--~~~~~~~~~ 79 (273)
T PF01943_consen 2 LKNSLWLFLSNILSALIGFITIPILARYLGPEEYGIYSLALSIVSLLSILADLGLSQAIVRFIAEYKDK--KELRSAYFS 79 (273)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHhHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhh--HHHHHHHHH
Confidence 455566666666666666666656555 6999999999999999888877 578888888777776533 233334444
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhhccCCChHHHHHHHHHHHHHHhhhHHHHHHHHHHhHHhhcCchHHHHHHHHHHHH
Q 007565 461 FVLKIGVLTGVSLATILGLSFGSLAPLFTKDPKVLGIVGTGVLFVSASQPINALAFIFDGLHYGVSDFRYAACSMMLVGA 540 (598)
Q Consensus 461 ~~l~~~~~~~~~~~~~l~~~~~~l~~lf~~d~~v~~~~~~~l~i~~~~~~~~~~~~i~~~~l~~~g~~~~~~~~~~~~~l 540 (598)
......++.++...+...... .+. +++... .+..+.....++..........+++.++.+..........+
T Consensus 80 ~~~~~~~~~~~i~~~~~~~~~-----~~~-~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 150 (273)
T PF01943_consen 80 SVLFLLLIFSLIFLLILLIAS-----FFG-NPSLSL---ILIILALLILILSSLSSVFSGLLQGLQRFKYIAISNIISSL 150 (273)
T ss_pred HHHHHHHHHHHHHHHHHHHHH-----HcC-CchHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 343333333332222222222 333 332221 11222222225677888889999999999988877776655
Q ss_pred HHHHHHHhhc-cCCChHHHHHHHHHHHHHHHHHHHHHHHh
Q 007565 541 MSSTFLLYAP-RATGLPGVWAGLTLFMGLRTVAGFVRLLS 579 (598)
Q Consensus 541 ~~~~~~~~l~-~~~Gi~G~~~a~~i~~~v~~~~~~~~l~~ 579 (598)
......+.+. ...++.+..++..++.++..++..+..++
T Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 190 (273)
T PF01943_consen 151 LSLLLILLLLFLGSSLWGFLLGLVISSLVSLIISLFYLRR 190 (273)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4432222222 23448888899999998887777777643
No 41
>KOG2864 consensus Nuclear division RFT1 protein [Cell cycle control, cell division, chromosome partitioning]
Probab=97.96 E-value=0.0067 Score=62.53 Aligned_cols=210 Identities=14% Similarity=0.118 Sum_probs=160.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhc---cChhhhhhhhhHHHHHHHHHHHhhhhhhhHHHHHHHHHHHhhhhh
Q 007565 140 AKNELIVLTLPAIAGQVIDPLAQLMETAYVGR---LGSVELASAGVSISIFNIVSKLFNIPLLSVATSFVAEDIAKNLTK 216 (598)
Q Consensus 140 ~~~~l~~~a~p~~~~~l~~~l~~~vd~~~vg~---lg~~~laa~~~a~~i~~~~~~~~~~gl~~~~~~~va~~~~~~~~~ 216 (598)
..+++.+...-..-..++-.+.+=-|.+++.- +.-.+.|.|.+.+..-.++.-++--++--..-.+.+|...+++.|
T Consensus 237 fd~d~~~~~~s~~~Qs~lKqlLTeGdkyvmt~~~~ls~~~QgvYd~v~n~GSLlaR~iF~PIEEss~~~FA~~ls~~~qe 316 (530)
T KOG2864|consen 237 FDNDLLKLTKSFTFQSFLKQLLTEGDKYVMTFTELLSFGDQGVYDLVSNYGSLLARLIFRPIEESSYIYFARLLSRDNQE 316 (530)
T ss_pred ccHHHHHHHHHHHHHHHHHHHhhcccceeEeeeccCCcchhhHHHHHHhhhhHHHHHHhChhHHHHHHHHHHHhhccchh
Confidence 34567777777778888888888888888873 444567777777777777776655566666677788877666533
Q ss_pred hhhhccCCCCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHchHHHHhhcCCCCCccchhHHHHHHHHHHhhHHHH
Q 007565 217 DLAAGLEGNGKPPNGTTERKQLSSVSTALLLAVGIGIFEAAALSLASGPFLNLMGVPSASAMHGPAKKFLMLRALGSPAF 296 (598)
Q Consensus 217 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~i~~~~~~~~~~~i~~~a~~yl~~~~~~~~~~ 296 (598)
| .++...+....+.+...+|+..+......+++.+.+++++.= ....+...+++.++.+|+.
T Consensus 317 ~----------------~k~a~~vL~~lLklv~~igli~~~FG~~YS~~vL~lygG~kw--ss~~~~~lL~~YclYI~~l 378 (530)
T KOG2864|consen 317 N----------------VKKAVDVLSNLLKLVIYIGLIFITFGPAYSYVVLLLYGGSKW--SSGGGSLLLSWYCLYIPFL 378 (530)
T ss_pred h----------------HHHHHHHHHHHHHHHHHHHHHHhhcCccccHHHHHHHcCccc--cCCCchHHHHHHHHHHHHH
Confidence 3 788888999999999999988888888888899988887643 2344668899999999999
Q ss_pred HHHHHHHHHHhccCCChhH---HHHHHHHHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHHHHHHHHhhcccc
Q 007565 297 VVSLALQGIFRGFKDTKTP---VLCLGIGNLLAVFLFPILIYFCQLGMPGAAISTVVSQYIVAVTMIWFLNKKVVL 369 (598)
Q Consensus 297 ~l~~~~~~~l~~~~~~~~~---~~~~~~~~~~~i~l~~lli~~~~~Gi~Gaa~at~is~~~~~~~~~~~l~~~~~~ 369 (598)
+++.+..+++.+..+.+.. -...++..++.++++++++-. +|..|..+|.++.+.+-.+..+.++++..+.
T Consensus 379 AiNGitEaF~~A~~t~~qi~~~n~~mlafSviflilsylL~~~--~~~~GlIlANiiNm~lRIlys~~fI~~~yr~ 452 (530)
T KOG2864|consen 379 AINGITEAFAFAVATSRQIDKHNKFMLAFSVIFLILSYLLIRW--FGLVGLILANIINMSLRILYSLRFIRHYYRD 452 (530)
T ss_pred HhccHHHHHHHHhccHHHHHhcccchhHHHHHHHHHHHHHHHH--hchhHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 9999999999988766543 334555677788899999975 5669999999998888888777777665543
No 42
>PF13440 Polysacc_synt_3: Polysaccharide biosynthesis protein
Probab=97.95 E-value=0.0024 Score=62.59 Aligned_cols=160 Identities=18% Similarity=0.176 Sum_probs=105.0
Q ss_pred HHHHHhcChhHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 007565 404 TSMAARQGSDAMAAHQICMQVWLAVSLLT-DALAASGQALIASYVSKGDFKTVREITNFVLKIGVLTGVSLATILGLSFG 482 (598)
Q Consensus 404 ~~i~~~~g~~~vaa~~i~~~i~~~~~~~~-~~l~~a~~p~is~~~g~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~ 482 (598)
..+...+|+++.+.|+....+..+...+. .|+.+...- ..++|.++.++.....+....+..++..++......
T Consensus 9 ~~lar~l~~~~~G~~~~~~s~~~~~~~~~~~g~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (251)
T PF13440_consen 9 ILLARYLGPEDFGIYALIFSIVSILSIVASLGLRQSLVR-----SAARDKQDIRSLLRFSLLVSLLLAVILAILAILIAY 83 (251)
T ss_pred HHHHHHCCHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH-----hhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445569999999999999988887764 555544433 234666777777777666555555444433222222
Q ss_pred hhhhccCCChHHHHHHHHHHHHHHhhhHHHHHHHHHHhHHhhcCchHHHHHHHHHHHHHHH-HHHHhhccCCChHHHHHH
Q 007565 483 SLAPLFTKDPKVLGIVGTGVLFVSASQPINALAFIFDGLHYGVSDFRYAACSMMLVGAMSS-TFLLYAPRATGLPGVWAG 561 (598)
Q Consensus 483 ~l~~lf~~d~~v~~~~~~~l~i~~~~~~~~~~~~i~~~~l~~~g~~~~~~~~~~~~~l~~~-~~~~~l~~~~Gi~G~~~a 561 (598)
.+ .+++ ...++.+.++..++..+.......+++.+|.+..........+... ..........++.+..++
T Consensus 84 ----~~-~~~~----~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (251)
T PF13440_consen 84 ----FF-GDPE----LFWLLLLLALAIFFSALSQLFRSILRARGRFRAYALIDIVRSLLRLLLLVLLLYLGLNLWSILLA 154 (251)
T ss_pred ----Hh-CChh----HHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence 33 3332 2344566677778888999999999999999998887777655432 112222223478888888
Q ss_pred HHHHHHHHHHHHHHHH
Q 007565 562 LTLFMGLRTVAGFVRL 577 (598)
Q Consensus 562 ~~i~~~v~~~~~~~~l 577 (598)
..++.++..+..++..
T Consensus 155 ~~~~~~~~~~~~~~~~ 170 (251)
T PF13440_consen 155 FIISALLALLISFYLL 170 (251)
T ss_pred HHHHHHHHHHHHHHHh
Confidence 8888888777666654
No 43
>PF14667 Polysacc_synt_C: Polysaccharide biosynthesis C-terminal domain
Probab=97.87 E-value=7e-05 Score=67.21 Aligned_cols=80 Identities=5% Similarity=-0.007 Sum_probs=74.1
Q ss_pred HHHHHhhhHHHHHHHHHHhHHhhcCchHHHHHHHHHHHHHHHHHHHhhccCCChHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 007565 502 VLFVSASQPINALAFIFDGLHYGVSDFRYAACSMMLVGAMSSTFLLYAPRATGLPGVWAGLTLFMGLRTVAGFVRLLSKS 581 (598)
Q Consensus 502 l~i~~~~~~~~~~~~i~~~~l~~~g~~~~~~~~~~~~~l~~~~~~~~l~~~~Gi~G~~~a~~i~~~v~~~~~~~~l~~~~ 581 (598)
+++++++.++.++......++++.||+|..++.+....+++..+++.+++.+|..|+++++.+++++...+..+..+++.
T Consensus 2 l~il~~~~~~~~l~~~~~~il~~~~k~~~~~~~~~~~~~v~i~~~~~li~~~G~~Gaa~a~~i~~~~~~~~~~~~~~k~~ 81 (146)
T PF14667_consen 2 LQILALAIIFMGLSQPLGSILQAMGKTKWPFIITLIGAIVNIILNYILIPRFGIYGAAIATAISEIVSFILNLWYVRKKI 81 (146)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 67889999999999999999999999999999999999999999999999999999999999999999998888885543
No 44
>COG4267 Predicted membrane protein [Function unknown]
Probab=97.87 E-value=0.04 Score=55.53 Aligned_cols=339 Identities=12% Similarity=0.034 Sum_probs=184.0
Q ss_pred HHHHHHHhhhhhhhHHHHHHHHHHHhhhhhhhhhccCCCCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHchHHH
Q 007565 187 FNIVSKLFNIPLLSVATSFVAEDIAKNLTKDLAAGLEGNGKPPNGTTERKQLSSVSTALLLAVGIGIFEAAALSLASGPF 266 (598)
Q Consensus 187 ~~~~~~~~~~gl~~~~~~~va~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~i 266 (598)
..+++.++..|+....+.+++...=+++ .++....+-....++...+.+++.+++
T Consensus 69 ~~ifS~IiTgg~q~iiTRfiSD~lF~k~-------------------~~kIlpsy~Gvi~lv~~~a~~ig~~vf------ 123 (467)
T COG4267 69 CFIFSQIITGGFQLIITRFISDCLFEKK-------------------QRKILPSYIGVILLVTLVAGVIGLIVF------ 123 (467)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHHH-------------------HHHHhHhHHHHHHHHHHHHHHHHHHhh------
Confidence 3444455666788888888887654443 344444333333333333333332111
Q ss_pred HhhcCCCCCccchhHHHHHHHHHHhhHHHHHHHHHHHHHHhccCCChhHHHHHHHHHHHHHHHHHHHHhhcCCChhHHHH
Q 007565 267 LNLMGVPSASAMHGPAKKFLMLRALGSPAFVVSLALQGIFRGFKDTKTPVLCLGIGNLLAVFLFPILIYFCQLGMPGAAI 346 (598)
Q Consensus 267 ~~~~~~~~~~~i~~~a~~yl~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~l~~lli~~~~~Gi~Gaa~ 346 (598)
....+. ...|=...+.........-+...++.+.+|.+...+.-.++.++.+++..++- +.++.|..+
T Consensus 124 --~~~~~~-------si~yk~l~~~~FV~m~~~Wi~~iFlS~lK~y~~iv~sF~iG~~~sv~La~~~~---~~~ie~lLL 191 (467)
T COG4267 124 --FVNNQY-------SIVYKILACALFVGMSLVWILMIFLSGLKKYKLIVLSFFIGYVVSVLLARLFL---KSPIEGLLL 191 (467)
T ss_pred --hhcCch-------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HhHHHHHHH
Confidence 112111 22232333444555666677788899999999999999999999999888776 468999999
Q ss_pred HHHHHHHHHHHHHHHHHhhccccC-CCCccchhhhhhHhhcHHHHHHHHHHHHHHHHHHHHHHhc--ChhHHH------H
Q 007565 347 STVVSQYIVAVTMIWFLNKKVVLM-PPKMGALQFGDYVKSGGFLLGRTLAVLITMTLGTSMAARQ--GSDAMA------A 417 (598)
Q Consensus 347 at~is~~~~~~~~~~~l~~~~~~~-~~~~~~~~~~~~lk~~~p~~~~~~~~~i~~~i~~~i~~~~--g~~~va------a 417 (598)
+..++..+...+...++.|..+.. +-.++... ..+.-..+++......+..++++.+.=.- |....+ -
T Consensus 192 ~~~IGi~~i~~l~~~~Ilr~fk~~~~i~FdFL~---~~~~y~SLllIg~FY~lgiwid~FifW~~~~~~~Iag~~~~S~l 268 (467)
T COG4267 192 TLDIGIFIILFLLNFYILRYFKSSRRIGFDFLL---YRRKYPSLLLIGFFYNLGIWIDNFIFWKVPTGIEIAGPFFASPL 268 (467)
T ss_pred HHHHhHHHHHHHHHHHHHHhcccccccceehhh---hhhcchHHHHHHHHHHhHhhhhheeeEecCCCCEeecceecchh
Confidence 999999999999988887644221 22222222 22222234445556666666666553111 111111 1
Q ss_pred HHHHHHHHH---HHHHHHH--HHHHHHHHHHH----HHhc-------CCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 007565 418 HQICMQVWL---AVSLLTD--ALAASGQALIA----SYVS-------KGDFKTVREITNFVLKIGVLTGVSLATILGLSF 481 (598)
Q Consensus 418 ~~i~~~i~~---~~~~~~~--~l~~a~~p~is----~~~g-------~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~ 481 (598)
|-+..-... ++.++.. .+-+..++.-- +--| .++.++.....++.+.-.+-+-...++.+++++
T Consensus 269 YDvpiF~ayl~~iPs~vvF~i~lET~F~~~Yk~~y~~I~~g~tl~~I~~~~~kMiltlrq~i~~~~~lQ~~a~l~~flL~ 348 (467)
T COG4267 269 YDVPIFYAYLFIIPSMVVFLISLETDFQENYKEYYQAIRGGGTLREIENNLKKMILTLRQGILEIMELQMLASLLCFLLA 348 (467)
T ss_pred hhHHHHHHHHHhcchhheeeeeeeehHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 111111111 1111111 11122222111 0111 123345555666666666667777888889999
Q ss_pred hhhhhccCCChHHHHHHHHHHHHHHhhhHHHHHHHHHHhHHhhcCchHHHHHHHHHHHHHHHHHHHh---hccCCChHHH
Q 007565 482 GSLAPLFTKDPKVLGIVGTGVLFVSASQPINALAFIFDGLHYGVSDFRYAACSMMLVGAMSSTFLLY---APRATGLPGV 558 (598)
Q Consensus 482 ~~l~~lf~~d~~v~~~~~~~l~i~~~~~~~~~~~~i~~~~l~~~g~~~~~~~~~~~~~l~~~~~~~~---l~~~~Gi~G~ 558 (598)
+.+...|.-++ ...+.+.+-.++..+....+.+-.+.--..+-+..+.......+.+..+.++ +.+.|--.|.
T Consensus 349 ~~Ll~~~~lS~----~~l~lF~vd~lg~s~~i~f~~ll~i~lyfd~r~i~l~~t~~fli~N~ilT~i~l~lgp~~~g~gf 424 (467)
T COG4267 349 DALLLWFGLSE----YYLDLFYVDVLGVSCQIVFMSLLNIFLYFDYRRIALELTALFLISNGILTFIFLELGPGYYGVGF 424 (467)
T ss_pred HHHHHHcChHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhHHHHHhHHHHHHHHHhCccceehHH
Confidence 99988876543 3344555555666565555555555555666666655554444444444333 3344444566
Q ss_pred HHHHHHHHHHH
Q 007565 559 WAGLTLFMGLR 569 (598)
Q Consensus 559 ~~a~~i~~~v~ 569 (598)
.+|..+...+.
T Consensus 425 f~a~fl~vlv~ 435 (467)
T COG4267 425 FLASFLYVLVA 435 (467)
T ss_pred HHHHHHHHHHH
Confidence 66665555443
No 45
>PF07260 ANKH: Progressive ankylosis protein (ANKH); InterPro: IPR009887 This family consists of several progressive ankylosis protein (ANK or ANKH) sequences. The ANK protein spans the outer cell membrane and shuttles inorganic pyrophosphate (PPi), a major inhibitor of physiologic and pathologic calcification, bone mineralisation and bone resorption []. Mutations in ANK are thought to give rise to Craniometaphyseal dysplasia (CMD) which is a rare skeletal disorder characterised by progressive thickening and increased mineral density of craniofacial bones and abnormally developed metaphyses in long bones [].; GO: 0015114 phosphate ion transmembrane transporter activity, 0035435 phosphate ion transmembrane transport, 0016021 integral to membrane
Probab=96.67 E-value=0.49 Score=47.12 Aligned_cols=156 Identities=12% Similarity=0.068 Sum_probs=102.6
Q ss_pred chhhhhhHhhcHHHHHHHHHHHHHHHHHHHHHHhcC---hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCh
Q 007565 376 ALQFGDYVKSGGFLLGRTLAVLITMTLGTSMAARQG---SDAMAAHQICMQVWLAVSLLTDALAASGQALIASYVSKGDF 452 (598)
Q Consensus 376 ~~~~~~~lk~~~p~~~~~~~~~i~~~i~~~i~~~~g---~~~vaa~~i~~~i~~~~~~~~~~l~~a~~p~is~~~g~~~~ 452 (598)
...+++++++-.|+.++..+..+.-.+.+.-+++-. .+.+|+|+++..+.-++..+...+-+....+ ++++.
T Consensus 7 ~~~y~~li~F~iPLa~ts~~~dl~~qiiNagLAr~~e~~vetLAsfglA~sL~lf~~sp~~~~~~igl~~-----V~s~r 81 (345)
T PF07260_consen 7 LTSYWPLIRFFIPLAITSLAMDLGEQIINAGLARVQEDPVETLASFGLAYSLMLFFASPLSMFHHIGLVF-----VNSKR 81 (345)
T ss_pred cchHHHHHHHHHHHHHHHHHHhccHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHhChhhhhHHHHHHH-----hcchh
Confidence 346778999999999999999988888887777642 3568999999999888877777766555444 33432
Q ss_pred HHHHHHHHHHHHHHHHHHHH-HHHHHHHhhhh-hhhccCCChHHHHHHHHHHHHHHhhhHHHHHHHHHHhHHhhcCchHH
Q 007565 453 KTVREITNFVLKIGVLTGVS-LATILGLSFGS-LAPLFTKDPKVLGIVGTGVLFVSASQPINALAFIFDGLHYGVSDFRY 530 (598)
Q Consensus 453 ~~~~~~~~~~l~~~~~~~~~-~~~~l~~~~~~-l~~lf~~d~~v~~~~~~~l~i~~~~~~~~~~~~i~~~~l~~~g~~~~ 530 (598)
++-+ ........+.+..+. ..+..-.+... +..++.-|+++.+.+...+.++.+.-+++++....+|++.=.+++..
T Consensus 82 srr~-~vl~~~vag~v~avi~~LIa~TpLG~~li~~lhgVs~~va~~tr~a~l~L~llPfl~alr~~~qGILik~r~s~i 160 (345)
T PF07260_consen 82 SRRK-AVLCMAVAGAVAAVIHLLIAWTPLGNYLINDLHGVSPSVAEKTRRAFLYLTLLPFLDALRWIHQGILIKHRHSWI 160 (345)
T ss_pred hhHH-HHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhccceeE
Confidence 2221 221111111111111 12222222332 33456678999999999999999999999999999999884444444
Q ss_pred HHHHHHH
Q 007565 531 AACSMML 537 (598)
Q Consensus 531 ~~~~~~~ 537 (598)
....++.
T Consensus 161 V~~aSI~ 167 (345)
T PF07260_consen 161 VGSASIA 167 (345)
T ss_pred eehHHHH
Confidence 4444443
No 46
>COG4267 Predicted membrane protein [Function unknown]
Probab=86.08 E-value=45 Score=34.44 Aligned_cols=134 Identities=13% Similarity=0.041 Sum_probs=85.5
Q ss_pred HHHHH-HHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhccCCChHHHHHHHHHHHHH
Q 007565 427 AVSLL-TDALAASGQALIASYVSKGDFKTVREITNFVLKIGVLTGVSLATILGLSFGSLAPLFTKDPKVLGIVGTGVLFV 505 (598)
Q Consensus 427 ~~~~~-~~~l~~a~~p~is~~~g~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~l~~lf~~d~~v~~~~~~~l~i~ 505 (598)
++.++ ..+++....-.+|+.+=++|.+++.....-++.+....+..++.+++ +.+++ .....+. ..
T Consensus 71 ifS~IiTgg~q~iiTRfiSD~lF~k~~~kIlpsy~Gvi~lv~~~a~~ig~~vf---------~~~~~--~si~yk~--l~ 137 (467)
T COG4267 71 IFSQIITGGFQLIITRFISDCLFEKKQRKILPSYIGVILLVTLVAGVIGLIVF---------FVNNQ--YSIVYKI--LA 137 (467)
T ss_pred HHHHHHhhhHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHhh---------hhcCc--hhHHHHH--HH
Confidence 33343 45577777777788877777777777666655555555444443111 22222 2223333 33
Q ss_pred HhhhHHHHHHHHHHhHHhhcCchHHHHHHHHHHHHHHHHHHHhhccCCChHHHHHHHHHHHHHHHHHHH
Q 007565 506 SASQPINALAFIFDGLHYGVSDFRYAACSMMLVGAMSSTFLLYAPRATGLPGVWAGLTLFMGLRTVAGF 574 (598)
Q Consensus 506 ~~~~~~~~~~~i~~~~l~~~g~~~~~~~~~~~~~l~~~~~~~~l~~~~Gi~G~~~a~~i~~~v~~~~~~ 574 (598)
+......+...+....+.+++|.+....+..+.-++...+..++ .++++.|.-++..++..+......
T Consensus 138 ~~~FV~m~~~Wi~~iFlS~lK~y~~iv~sF~iG~~~sv~La~~~-~~~~ie~lLL~~~IGi~~i~~l~~ 205 (467)
T COG4267 138 CALFVGMSLVWILMIFLSGLKKYKLIVLSFFIGYVVSVLLARLF-LKSPIEGLLLTLDIGIFIILFLLN 205 (467)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhHHHHHHHHHHHhHHHHHHHHH
Confidence 44455667778888899999999999888887766666555443 567999999999999866544443
No 47
>PF05975 EcsB: Bacterial ABC transporter protein EcsB; InterPro: IPR010288 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). This family consists of several bacterial ABC transporter proteins which are homologous to the EcsB protein of Bacillus subtilis. EcsB is thought to encode a hydrophobic protein with six membrane-spanning helices in a pattern found in other hydrophobic components of ABC transporters [].
Probab=64.58 E-value=1.9e+02 Score=30.38 Aligned_cols=39 Identities=8% Similarity=0.011 Sum_probs=32.6
Q ss_pred CChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcc
Q 007565 450 GDFKTVREITNFVLKIGVLTGVSLATILGLSFGSLAPLF 488 (598)
Q Consensus 450 ~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~l~~lf 488 (598)
.+.++.+++.+++...+++......+++....-|+...-
T Consensus 88 p~e~~~~~y~~~a~~yS~~~~~~~~~~~~~ll~Pl~~~~ 126 (386)
T PF05975_consen 88 PKESEMKQYFKRALRYSFVLQLLIQLLVFLLLLPLLMQV 126 (386)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355789999999999999999999888888888777743
No 48
>COG0798 ACR3 Arsenite efflux pump ACR3 and related permeases [Inorganic ion transport and metabolism]
Probab=63.91 E-value=1.8e+02 Score=29.77 Aligned_cols=95 Identities=20% Similarity=0.173 Sum_probs=51.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHchHHHHhhcCCCCCccchhHHHHHHHHHHhhHHHHHHHHHHHHHHhccCCChhHHH
Q 007565 238 LSSVSTALLLAVGIGIFEAAALSLASGPFLNLMGVPSASAMHGPAKKFLMLRALGSPAFVVSLALQGIFRGFKDTKTPVL 317 (598)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~i~~~~~~~~~~~i~~~a~~yl~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~ 317 (598)
.+.+.+.+..-..++...++.+-..-|-+...++..+ +..........+...+....+.--+...-+..+|.|.-..
T Consensus 9 l~~~dk~l~~wv~l~i~~Gi~lG~~~p~~~~~l~~~~---~~~~sipiai~L~~MmYP~m~ki~~~~~~~v~k~~k~L~l 85 (342)
T COG0798 9 LSFLDKYLTLWVFLAIAIGILLGVHFPGLAQLLGKLE---FGGVSIPIAIGLILMMYPPMLKIDFEELKNVFKDPKPLIL 85 (342)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHhcccchhhhcccce---eCceehhHHHHHHHHHhHHHhcCCHHHHHHHHhcchHHHH
Confidence 3444444444444455545444444555555665443 3333333344444445555566667788888888886666
Q ss_pred HHHHHHHHHHHHHHHHHh
Q 007565 318 CLGIGNLLAVFLFPILIY 335 (598)
Q Consensus 318 ~~~~~~~~~i~l~~lli~ 335 (598)
....+-++.-++.+.+..
T Consensus 86 sL~~Nwii~P~lm~~la~ 103 (342)
T COG0798 86 SLFVNWIIGPLLMFALAW 103 (342)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 655555555555544443
No 49
>PF05975 EcsB: Bacterial ABC transporter protein EcsB; InterPro: IPR010288 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). This family consists of several bacterial ABC transporter proteins which are homologous to the EcsB protein of Bacillus subtilis. EcsB is thought to encode a hydrophobic protein with six membrane-spanning helices in a pattern found in other hydrophobic components of ABC transporters [].
Probab=45.77 E-value=3.8e+02 Score=28.11 Aligned_cols=35 Identities=17% Similarity=0.096 Sum_probs=30.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHchHHHHh
Q 007565 234 ERKQLSSVSTALLLAVGIGIFEAAALSLASGPFLN 268 (598)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~i~~ 268 (598)
+++.+++++.+...+.+...+..+++....-|+..
T Consensus 90 e~~~~~y~~~a~~yS~~~~~~~~~~~~~ll~Pl~~ 124 (386)
T PF05975_consen 90 ESEMKQYFKRALRYSFVLQLLIQLLVFLLLLPLLM 124 (386)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 67899999999999999999988888888888776
No 50
>PF04505 Dispanin: Interferon-induced transmembrane protein; InterPro: IPR007593 This family includes the human leukocyte antigen CD225, which is an interferon inducible transmembrane protein, and is associated with interferon induced cell growth suppression [].; GO: 0009607 response to biotic stimulus, 0016021 integral to membrane
Probab=37.70 E-value=1.3e+02 Score=23.78 Aligned_cols=34 Identities=15% Similarity=0.200 Sum_probs=25.6
Q ss_pred HHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHH
Q 007565 439 GQALIASYVSKGDFKTVREITNFVLKIGVLTGVS 472 (598)
Q Consensus 439 ~~p~is~~~g~~~~~~~~~~~~~~l~~~~~~~~~ 472 (598)
....+-..+.+||++++++..+++..++.+-.+.
T Consensus 40 ~s~kv~~~~~~Gd~~~A~~aS~~Ak~~~~ia~~~ 73 (82)
T PF04505_consen 40 YSSKVRSRYAAGDYEGARRASRKAKKWSIIAIII 73 (82)
T ss_pred echhhHHHHHCCCHHHHHHHHHHhHHHHHHHHHH
Confidence 3445667788999999999999988887654443
No 51
>PF13347 MFS_2: MFS/sugar transport protein
Probab=31.00 E-value=6.4e+02 Score=26.44 Aligned_cols=22 Identities=9% Similarity=0.069 Sum_probs=12.1
Q ss_pred HhHHhhcCchHHHHHHHHHHHH
Q 007565 519 DGLHYGVSDFRYAACSMMLVGA 540 (598)
Q Consensus 519 ~~~l~~~g~~~~~~~~~~~~~l 540 (598)
..+.+=.|+.+......++..+
T Consensus 281 ~~l~~r~gk~~~~~~~~~~~~~ 302 (428)
T PF13347_consen 281 GRLSKRFGKKKVYIIGLLLAAL 302 (428)
T ss_pred HHHHHHccceeehhhhHHHHHH
Confidence 4445555777766555554443
No 52
>PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily. EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function [].
Probab=30.66 E-value=7.6e+02 Score=27.16 Aligned_cols=48 Identities=10% Similarity=0.049 Sum_probs=28.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHhccC--hhhhhhhhhHHHHHHHHH
Q 007565 144 LIVLTLPAIAGQVIDPLAQLMETAYVGRLG--SVELASAGVSISIFNIVS 191 (598)
Q Consensus 144 l~~~a~p~~~~~l~~~l~~~vd~~~vg~lg--~~~laa~~~a~~i~~~~~ 191 (598)
+.++-.-..++++.+.+..+.-.+++-++. +..++.+..+..++.++.
T Consensus 12 Fr~lw~a~~iS~lG~~~~~va~~wlv~~lt~S~~~valv~~a~~LP~~Ll 61 (524)
T PF05977_consen 12 FRRLWIAQLISNLGDWMQTVALAWLVTQLTGSPLMVALVQAASTLPILLL 61 (524)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHH
Confidence 333445566777777777777777776642 233555555555555443
No 53
>PRK04288 antiholin-like protein LrgB; Provisional
Probab=29.67 E-value=5.2e+02 Score=24.98 Aligned_cols=142 Identities=15% Similarity=0.196 Sum_probs=78.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHhc-cChhhhhhhhhHHHHHHHHHHHhhhhhhhHHHHHHHHHHHhhhhhhhh
Q 007565 141 KNELIVLTLPAIAGQVIDPLAQLMETAYVGR-LGSVELASAGVSISIFNIVSKLFNIPLLSVATSFVAEDIAKNLTKDLA 219 (598)
Q Consensus 141 ~~~l~~~a~p~~~~~l~~~l~~~vd~~~vg~-lg~~~laa~~~a~~i~~~~~~~~~~gl~~~~~~~va~~~~~~~~~~~~ 219 (598)
.+.+-+...|..++.++..+.+++....+++ +|-++.-..++.- -..|+-++-..+++
T Consensus 86 ~~~lk~~~~~Il~~~~vG~~~~i~s~~~la~~lgl~~~~~~Sl~p---------------KSVTtPIAm~is~~------ 144 (232)
T PRK04288 86 RDVLKKYWWQILGGIVVGSVCSVLIIYLVAKLIQLDNAVMASMLP---------------QAATTAIALPVSAG------ 144 (232)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCcCHHHHHHHhh---------------HhhhHHHHHHHHHH------
Confidence 4667788889999999999999999999999 7766533222221 11222222222221
Q ss_pred hccCCCCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHchHHHHhhcCCCCCccchhHHHHHHHHHHhhHHHHHHH
Q 007565 220 AGLEGNGKPPNGTTERKQLSSVSTALLLAVGIGIFEAAALSLASGPFLNLMGVPSASAMHGPAKKFLMLRALGSPAFVVS 299 (598)
Q Consensus 220 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~i~~~~~~~~~~~i~~~a~~yl~~~~~~~~~~~l~ 299 (598)
....-. +...+.++..++...++++++++++.++. ..+-..++.-..++.
T Consensus 145 -----------------iGG~ps----LtA~~ViitGi~Gai~g~~llk~~~I~~~---------~a~GlalG~asHaiG 194 (232)
T PRK04288 145 -----------------IGGIKE----ITSFAVIFNAVIIYALGAKFLKLFRIKNP---------IAKGLALGTSGHALG 194 (232)
T ss_pred -----------------hCCcHH----HHHHHHHHHHHHHHHHHHHHHHHcCCCCH---------HHHHHHHhHHHHHHH
Confidence 111111 12223334445566789999999987753 455566666555542
Q ss_pred HHHHHHHhccCCChhHHHHHHHHHHHHHHHHHHHH
Q 007565 300 LALQGIFRGFKDTKTPVLCLGIGNLLAVFLFPILI 334 (598)
Q Consensus 300 ~~~~~~l~~~~~~~~~~~~~~~~~~~~i~l~~lli 334 (598)
.....-.+...--.......++.++..++.+++.
T Consensus 195 -TarA~e~~~~~Ga~sslam~l~gi~tail~P~l~ 228 (232)
T PRK04288 195 -VAVGIEMGEVEAAMASIAVVVVGVVTVAVVPVFV 228 (232)
T ss_pred -HHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2233333333334444444555555555555544
No 54
>COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism]
Probab=28.96 E-value=7.7e+02 Score=26.69 Aligned_cols=30 Identities=17% Similarity=0.017 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHh
Q 007565 141 KNELIVLTLPAIAGQVIDPLAQLMETAYVG 170 (598)
Q Consensus 141 ~~~l~~~a~p~~~~~l~~~l~~~vd~~~vg 170 (598)
.|+-+..+.+-+..++.....+..-..+--
T Consensus 11 ~~eki~Yg~gd~~~~~~~~~~~~yLl~fYT 40 (467)
T COG2211 11 LKEKIGYGLGDFASNFAFGIVVLYLLFFYT 40 (467)
T ss_pred HHHHHhhcchhhHHHHHHHHHHHHHHHHHh
Confidence 456667777766665555554444444433
No 55
>PF04306 DUF456: Protein of unknown function (DUF456); InterPro: IPR007403 This is a family of putative membrane proteins.
Probab=27.89 E-value=4.2e+02 Score=23.32 Aligned_cols=20 Identities=25% Similarity=0.086 Sum_probs=9.8
Q ss_pred hhhhhHhhcHHHHHHHHHHH
Q 007565 378 QFGDYVKSGGFLLGRTLAVL 397 (598)
Q Consensus 378 ~~~~~lk~~~p~~~~~~~~~ 397 (598)
+.++-+|.+.-.+...+...
T Consensus 102 ~~~~A~~~~~ga~~g~~~g~ 121 (140)
T PF04306_consen 102 DFRRALRAGIGALVGFLAGT 121 (140)
T ss_pred CHHHHHHHHHHHHHHHHHHH
Confidence 44555555555444444433
No 56
>KOG1289 consensus Amino acid transporters [Amino acid transport and metabolism]
Probab=26.29 E-value=4.1e+02 Score=29.18 Aligned_cols=43 Identities=2% Similarity=0.099 Sum_probs=27.6
Q ss_pred CCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHchH-HHHhhcC
Q 007565 229 PNGTTERKQLSSVSTALLLAVGIGIFEAAALSLASG-PFLNLMG 271 (598)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~i~~~~~ 271 (598)
|.++..+.+.+-+-.+..++.+++....+.+....+ .+-..+.
T Consensus 277 E~~nAsk~aPrgIi~s~~i~~i~gw~~~I~i~~~i~~D~~~v~n 320 (550)
T KOG1289|consen 277 ETKNASKAAPRGIISSIAIGFILGWIIIIGIAYTIPDDLDAVLN 320 (550)
T ss_pred HhcchhhhccHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHhc
Confidence 445556666677777777777777777766666666 4444443
No 57
>PTZ00370 STEVOR; Provisional
Probab=26.09 E-value=2.2e+02 Score=28.35 Aligned_cols=20 Identities=5% Similarity=-0.014 Sum_probs=12.9
Q ss_pred HHHHHHHHHHhcCCCccccc
Q 007565 569 RTVAGFVRLLSKSGPWWFLH 588 (598)
Q Consensus 569 ~~~~~~~~l~~~~~~w~~~~ 588 (598)
..++.+|.+|+|+..|++..
T Consensus 271 liilYiwlyrrRK~swkhe~ 290 (296)
T PTZ00370 271 LIILYIWLYRRRKNSWKHEC 290 (296)
T ss_pred HHHHHHHHHHhhcchhHHHH
Confidence 33555666667778888653
No 58
>PF04172 LrgB: LrgB-like family ; InterPro: IPR007300 The two products of the lrgAB operon are potential membrane proteins, and LrgA and LrgB are both thought to control murein hydrolase activity and penicillin tolerance [].
Probab=24.61 E-value=6.2e+02 Score=24.16 Aligned_cols=37 Identities=19% Similarity=0.341 Sum_probs=31.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHhc-cChhhh
Q 007565 141 KNELIVLTLPAIAGQVIDPLAQLMETAYVGR-LGSVEL 177 (598)
Q Consensus 141 ~~~l~~~a~p~~~~~l~~~l~~~vd~~~vg~-lg~~~l 177 (598)
.+.+.+...|.+.+.+...+.+++...++++ +|-++-
T Consensus 70 ~~~l~~~~~~il~~~~~g~~~~~~~~~~l~~~lgl~~~ 107 (215)
T PF04172_consen 70 RRLLKKNWIPILVGVLVGSLVSIFSAVLLARLLGLSPE 107 (215)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCcCHH
Confidence 5678888899999999999999999999999 776543
No 59
>COG4536 CorB Putative Mg2+ and Co2+ transporter CorB [Inorganic ion transport and metabolism]
Probab=23.14 E-value=5.7e+02 Score=26.69 Aligned_cols=95 Identities=20% Similarity=0.172 Sum_probs=53.3
Q ss_pred HHHHHHHHHHHHHHhHHHHhc-cChhhhhhhhhHHHHHHHHHHHhhhhhhhHHHHHHHHHHHhhhhhhhhhccCCCCCCC
Q 007565 151 AIAGQVIDPLAQLMETAYVGR-LGSVELASAGVSISIFNIVSKLFNIPLLSVATSFVAEDIAKNLTKDLAAGLEGNGKPP 229 (598)
Q Consensus 151 ~~~~~l~~~l~~~vd~~~vg~-lg~~~laa~~~a~~i~~~~~~~~~~gl~~~~~~~va~~~~~~~~~~~~~~~~~~~~~~ 229 (598)
.+..++++.+.+.+-+.+.-+ +|+.++|..+.+.+ ++..+|+ -++++.++.-.
T Consensus 63 LIGNNLvNilasalaT~~~irl~Gd~GvaIAt~~mT---~vilvFa--------EVlPKt~Aa~~--------------- 116 (423)
T COG4536 63 LIGNNLVNILASALATILGIRLYGDAGVAIATGVLT---FVILVFA--------EVLPKTIAALY--------------- 116 (423)
T ss_pred eecccHHHHHHHHHHHHHHHHHhccchHHHHHHHHH---HHHHHHH--------HhcchHHhhhC---------------
Confidence 344555555555554444444 67766554433333 3322222 23344444443
Q ss_pred CCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHchHHHHhhcCCCCC
Q 007565 230 NGTTERKQLSSVSTALLLAVGIGIFEAAALSLASGPFLNLMGVPSA 275 (598)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~i~~~~~~~~~ 275 (598)
+++.....+..+.....+..++..++-.+..-+++++|.+.+
T Consensus 117 ----perva~~~s~~l~~l~~l~~Plv~lln~it~~llrl~gi~~~ 158 (423)
T COG4536 117 ----PERVALPSSFILAILVRLFGPLVWLLNAITRRLLRLLGINLD 158 (423)
T ss_pred ----hhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcCcc
Confidence 566655566666666666667667777778888888887654
No 60
>PF06808 DctM: DctM-like transporters; InterPro: IPR010656 This domain represents a conserved region located towards the N terminus of the DctM subunit of the bacterial and archaeal TRAP C4-dicarboxylate transport (Dct) system permease. In general, C4-dicarboxylate transport systems allow C4-dicarboxylates like succinate, fumarate, and malate to be taken up. TRAP C4-dicarboxylate carriers are secondary carriers that use an electrochemical H+ gradient as the driving force for transport. DctM is an integral membrane protein that is one of the constituents of TRAP carriers [, ]. Note that many family members are hypothetical proteins.
Probab=23.04 E-value=9.2e+02 Score=25.57 Aligned_cols=80 Identities=10% Similarity=-0.032 Sum_probs=40.3
Q ss_pred CccchhhhhhHhhcHHHHHHHHHHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCh
Q 007565 373 KMGALQFGDYVKSGGFLLGRTLAVLITMTLGTSMAARQGSDAMAAHQICMQVWLAVSLLTDALAASGQALIASYVSKGDF 452 (598)
Q Consensus 373 ~~~~~~~~~~lk~~~p~~~~~~~~~i~~~i~~~i~~~~g~~~vaa~~i~~~i~~~~~~~~~~l~~a~~p~is~~~g~~~~ 452 (598)
+.+.++.++.++.++|..+..+.. +...+.+.+.+.+.+++++..-+.- ++- + ..+-+.
T Consensus 203 ~~~~~~~~~~~~~~~~~l~~p~ii-----l~~i~~g~~t~teaa~~~~~~~l~i-------~~~------~---~~~~~~ 261 (416)
T PF06808_consen 203 RASLKERWRAFKRAIPALLIPVII-----LGGIYLGIFTPTEAAAVAVVYALVI-------GLF------V---YRRLSW 261 (416)
T ss_pred cchHHHHHHHHHhcchHHHHHHHH-----HHHhhhcccchhhhhhhhHHHHHHH-------HHh------h---hcccCh
Confidence 344455566666666654433321 2223344456666666655544321 000 0 445566
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 007565 453 KTVREITNFVLKIGVLTGVSL 473 (598)
Q Consensus 453 ~~~~~~~~~~l~~~~~~~~~~ 473 (598)
++..+....+.+.+..+...+
T Consensus 262 ~~l~~~l~~~~~~~~~i~~ii 282 (416)
T PF06808_consen 262 KDLWRALVETARTTGMILFII 282 (416)
T ss_pred hhhhHHHHHHHHHHHHHHHHH
Confidence 676677777666665544433
Done!