Query 007565
Match_columns 598
No_of_seqs 298 out of 1649
Neff 9.1
Searched_HMMs 13730
Date Mon Mar 25 04:56:45 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007565.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/007565hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1pw4a_ f.38.1.1 (A:) Glycerol 35.4 1.5E+02 0.011 26.6 36.4 27 550-576 404-430 (447)
2 d1pw4a_ f.38.1.1 (A:) Glycerol 21.8 2.6E+02 0.019 24.8 17.9 26 338-363 406-431 (447)
3 d1pv7a_ f.38.1.2 (A:) Lactose 12.6 3.9E+02 0.028 22.7 31.5 26 551-576 374-399 (417)
4 d1lghb_ f.3.1.1 (B:) Light-har 10.3 1.3E+02 0.0098 18.0 3.2 32 234-265 11-42 (43)
5 d1d0da_ g.8.1.2 (A:) Anticoagu 5.3 65 0.0048 20.2 0.0 26 31-56 8-36 (60)
6 d2fd6u3 g.7.1.3 (U:92-188) Uro 4.7 1.1E+02 0.0081 21.4 0.9 20 30-49 16-35 (97)
7 d1jo5a_ f.3.1.1 (A:) Light-har 4.7 2.2E+02 0.016 17.4 2.2 32 234-265 16-47 (48)
8 d1xmeb2 f.17.2.1 (B:3-36) Bact 4.1 3.3E+02 0.024 14.5 3.1 14 558-571 15-28 (34)
9 d1pv7a_ f.38.1.2 (A:) Lactose 3.5 1E+03 0.076 19.4 15.1 26 339-364 376-401 (417)
10 d1oedb_ f.36.1.1 (B:) Acetylch 3.1 4.3E+02 0.031 21.6 3.9 49 206-265 195-243 (250)
No 1
>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}
Probab=35.41 E-value=1.5e+02 Score=26.63 Aligned_cols=27 Identities=15% Similarity=-0.102 Sum_probs=15.0
Q ss_pred ccCCChHHHHHHHHHHHHHHHHHHHHH
Q 007565 550 PRATGLPGVWAGLTLFMGLRTVAGFVR 576 (598)
Q Consensus 550 ~~~~Gi~G~~~a~~i~~~v~~~~~~~~ 576 (598)
...+|..+..+......++..++.+..
T Consensus 404 ~~~~g~~~~~~~~~~~~~~~~~~~~~~ 430 (447)
T d1pw4a_ 404 VDFFGWDGGFMVMIGGSILAVILLIVV 430 (447)
T ss_dssp HHSSCSHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhChHHHHHHHHHHHHHHHHHHHHH
Confidence 355777766665555555554444444
No 2
>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}
Probab=21.83 E-value=2.6e+02 Score=24.84 Aligned_cols=26 Identities=12% Similarity=0.279 Sum_probs=12.9
Q ss_pred CCChhHHHHHHHHHHHHHHHHHHHHH
Q 007565 338 QLGMPGAAISTVVSQYIVAVTMIWFL 363 (598)
Q Consensus 338 ~~Gi~Gaa~at~is~~~~~~~~~~~l 363 (598)
..|..+..+.......+..++.+...
T Consensus 406 ~~g~~~~~~~~~~~~~~~~~~~~~~~ 431 (447)
T d1pw4a_ 406 FFGWDGGFMVMIGGSILAVILLIVVM 431 (447)
T ss_dssp SSCSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhChHHHHHHHHHHHHHHHHHHHHHH
Confidence 45655555544444444444444443
No 3
>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]}
Probab=12.59 E-value=3.9e+02 Score=22.73 Aligned_cols=26 Identities=19% Similarity=0.179 Sum_probs=13.4
Q ss_pred cCCChHHHHHHHHHHHHHHHHHHHHH
Q 007565 551 RATGLPGVWAGLTLFMGLRTVAGFVR 576 (598)
Q Consensus 551 ~~~Gi~G~~~a~~i~~~v~~~~~~~~ 576 (598)
..+|....++...+..++..++.++.
T Consensus 374 ~~~g~~~~~~~~~~~~~~~~~~~~~~ 399 (417)
T d1pv7a_ 374 ESIGFQGAYLVLGLVALGFTLISVFT 399 (417)
T ss_dssp HHHCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHCHHHHHHHHHHHHHHHHHHHHHh
Confidence 44676666555544444444444444
No 4
>d1lghb_ f.3.1.1 (B:) Light-harvesting complex subunits {Rhodospirillum molischianum [TaxId: 1083]}
Probab=10.28 E-value=1.3e+02 Score=18.02 Aligned_cols=32 Identities=3% Similarity=-0.167 Sum_probs=23.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHchHH
Q 007565 234 ERKQLSSVSTALLLAVGIGIFEAAALSLASGP 265 (598)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 265 (598)
.++..+++.+++.+-..++++.-++.+...|+
T Consensus 11 A~EfH~~~~~g~~~F~~iAvvAHiLvw~wrPW 42 (43)
T d1lghb_ 11 AIAVHDQFKTTFSAFIILAAVAHVLVWVWKPW 42 (43)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 57778888888888888887777776665543
No 5
>d1d0da_ g.8.1.2 (A:) Anticoagulant protein, factor Xa inhibitor {Soft tick (Ornithodoros moubata) [TaxId: 6938]}
Probab=5.31 E-value=65 Score=20.15 Aligned_cols=26 Identities=12% Similarity=-0.092 Sum_probs=16.7
Q ss_pred Cceeeeecccccccchh---hhhchhhcc
Q 007565 31 ASRFSLQQSRIGDGCAA---FDSSCRLSL 56 (598)
Q Consensus 31 ~~~~~~~~~~~~~~~~~---~~~~~~~~~ 56 (598)
||.+.-|+++..+..+. .++++++++
T Consensus 8 p~d~~~~c~~~e~~~~~~f~~~k~~c~~f 36 (60)
T d1d0da_ 8 PRDWIDECDSNEGGERAYFRNGKGGCDSF 36 (60)
T ss_dssp CTTCCCCCCGGGTCEEEEEECSSSSEEEE
T ss_pred hHHhHhhccCCCCceEEeccCCCCCCCcc
Confidence 67777777777666665 455666654
No 6
>d2fd6u3 g.7.1.3 (U:92-188) Urokinase plasminogen activator surface receptor, UPAR {Human (Homo sapiens) [TaxId: 9606]}
Probab=4.69 E-value=1.1e+02 Score=21.37 Aligned_cols=20 Identities=20% Similarity=0.172 Sum_probs=17.6
Q ss_pred cCceeeeecccccccchhhh
Q 007565 30 NASRFSLQQSRIGDGCAAFD 49 (598)
Q Consensus 30 ~~~~~~~~~~~~~~~~~~~~ 49 (598)
.||+-+||+.++++||-+..
T Consensus 16 RGr~qsLQCr~p~eqClevV 35 (97)
T d2fd6u3 16 RGRHQSLQCRSPEEQCLDVV 35 (97)
T ss_dssp TTCCEEEECSSTTCEEEEEE
T ss_pred hchhhccccCCchhhHhHHh
Confidence 58999999999999998844
No 7
>d1jo5a_ f.3.1.1 (A:) Light-harvesting complex subunits {Rhodobacter sphaeroides [TaxId: 1063]}
Probab=4.66 E-value=2.2e+02 Score=17.42 Aligned_cols=32 Identities=16% Similarity=0.052 Sum_probs=23.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHchHH
Q 007565 234 ERKQLSSVSTALLLAVGIGIFEAAALSLASGP 265 (598)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 265 (598)
.++..+++.+++.+-..++++.-++.+...|+
T Consensus 16 A~E~H~~~~~g~~~F~~iAvvAH~L~w~wrPW 47 (48)
T d1jo5a_ 16 AQELHSVYMSGLWLFSAVAIVAHLAVYIWRPW 47 (48)
T ss_dssp HHHHHHHHHHTTTHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 46677788888888777777777777665554
No 8
>d1xmeb2 f.17.2.1 (B:3-36) Bacterial ba3 type cytochrome c oxidase subunit II {Thermus thermophilus [TaxId: 274]}
Probab=4.08 E-value=3.3e+02 Score=14.48 Aligned_cols=14 Identities=21% Similarity=0.387 Sum_probs=7.4
Q ss_pred HHHHHHHHHHHHHH
Q 007565 558 VWAGLTLFMGLRTV 571 (598)
Q Consensus 558 ~~~a~~i~~~v~~~ 571 (598)
-|+++.+++++.++
T Consensus 15 gwlafslamlfvfi 28 (34)
T d1xmeb2 15 GWLAFSLAMLFVFI 28 (34)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHH
Confidence 35566555554443
No 9
>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]}
Probab=3.48 E-value=1e+03 Score=19.41 Aligned_cols=26 Identities=15% Similarity=0.268 Sum_probs=9.7
Q ss_pred CChhHHHHHHHHHHHHHHHHHHHHHh
Q 007565 339 LGMPGAAISTVVSQYIVAVTMIWFLN 364 (598)
Q Consensus 339 ~Gi~Gaa~at~is~~~~~~~~~~~l~ 364 (598)
.|...+.+...+-..+..++.++.++
T Consensus 376 ~g~~~~~~~~~~~~~~~~~~~~~~l~ 401 (417)
T d1pv7a_ 376 IGFQGAYLVLGLVALGFTLISVFTLS 401 (417)
T ss_dssp HCHHHHHHHHHHHHHHHHHHHHHHSC
T ss_pred HCHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 44444333333333333333334333
No 10
>d1oedb_ f.36.1.1 (B:) Acetylcholine receptor protein, beta chain {Marbled electric ray (Torpedo marmorata) [TaxId: 7788]}
Probab=3.14 E-value=4.3e+02 Score=21.62 Aligned_cols=49 Identities=8% Similarity=-0.130 Sum_probs=0.0
Q ss_pred HHHHHHhhhhhhhhhccCCCCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHchHH
Q 007565 206 VAEDIAKNLTKDLAAGLEGNGKPPNGTTERKQLSSVSTALLLAVGIGIFEAAALSLASGP 265 (598)
Q Consensus 206 va~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 265 (598)
+.+...+++.++..++| .+.....+.+.+.+.+++..+++.+..++..|
T Consensus 195 i~~~~~~~~~~~~~~~E-----------W~~vA~VlDRlfl~lF~l~~vi~t~~i~l~ap 243 (250)
T d1oedb_ 195 IAEQLESASEFDDLKKD-----------WQYVAMVADRLFLYVFFVICSIGTFSIFLDAS 243 (250)
T ss_dssp --------------------------------CHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCc
Done!