BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 007566
         (598 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|4GF2|A Chain A, Crystal Structure Of Plasmodium Falciparum Erythrocyte
           Binding Antigen 140 (Pfeba-140BAEBL)
          Length = 615

 Score = 31.2 bits (69), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 14/46 (30%), Positives = 28/46 (60%), Gaps = 1/46 (2%)

Query: 263 EVSQVFKDLGILSIETLKRELMEANESRDAALMEVSEMRSSFGELR 308
           E  + FK++ ++S+ T  + L   NE +D ++   +E+R+SF + R
Sbjct: 54  ETMEKFKEIFLISVNTEAKLLYNKNEGKDPSIF-CNELRNSFSDFR 98


>pdb|1JTH|A Chain A, Crystal Structure And Biophysical Properties Of A Complex
           Between The N-Terminal Region Of Snap25 And The Snare
           Region Of Syntaxin 1a
 pdb|1JTH|C Chain C, Crystal Structure And Biophysical Properties Of A Complex
           Between The N-Terminal Region Of Snap25 And The Snare
           Region Of Syntaxin 1a
          Length = 82

 Score = 30.0 bits (66), Expect = 4.1,   Method: Composition-based stats.
 Identities = 21/83 (25%), Positives = 43/83 (51%), Gaps = 4/83 (4%)

Query: 252 SENSPNRTESEEVSQVFKDLGILSIETLKRELMEANESRDAALMEVSEMRSSFGELRQKL 311
           +E++  R E EE+ +    L   S+E+ +R L    ES+DA +  +  +     E  ++L
Sbjct: 2   AEDADMRNELEEMQRRADQLADESLESTRRMLQLVEESKDAGIRTLVML----DEQGEQL 57

Query: 312 EYLEAYCEELKKALRQAATHAKD 334
           E +E   +++ K +++A  +  D
Sbjct: 58  ERIEEGMDQINKDMKEAEKNLTD 80


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.316    0.129    0.377 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 15,578,377
Number of Sequences: 62578
Number of extensions: 591500
Number of successful extensions: 1740
Number of sequences better than 100.0: 8
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 1737
Number of HSP's gapped (non-prelim): 8
length of query: 598
length of database: 14,973,337
effective HSP length: 104
effective length of query: 494
effective length of database: 8,465,225
effective search space: 4181821150
effective search space used: 4181821150
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 54 (25.4 bits)