BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 007566
         (598 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|O32044|RECJ_BACSU Single-stranded-DNA-specific exonuclease RecJ OS=Bacillus subtilis
           (strain 168) GN=recJ PE=3 SV=1
          Length = 786

 Score = 33.9 bits (76), Expect = 3.7,   Method: Compositional matrix adjust.
 Identities = 27/94 (28%), Positives = 47/94 (50%), Gaps = 6/94 (6%)

Query: 248 KKHKSENSPNRTESEE----VSQVFKDLGILSIETLKRELMEANESRDAALMEVSEMRSS 303
           KKH SE + ++  S E    +++VF DLG + IE     ++   + RD    +  + +  
Sbjct: 690 KKHGSELAKHKGWSVETINFMTKVFFDLGFVKIENGVLSVVSGAKKRDLTDSQTYQAKQQ 749

Query: 304 FGELRQKLEYLEAYCEELKKALRQAATHAKDSHQ 337
             EL QKL Y  +  EELK+ L +      ++++
Sbjct: 750 LMELDQKLNY--SSAEELKEWLNKLMKQDSEAYE 781


>sp|P15215|LAMC1_DROME Laminin subunit gamma-1 OS=Drosophila melanogaster GN=LanB2 PE=2 SV=2
          Length = 1639

 Score = 32.7 bits (73), Expect = 8.3,   Method: Compositional matrix adjust.
 Identities = 39/154 (25%), Positives = 67/154 (43%), Gaps = 45/154 (29%)

Query: 274  LSIETLKRELMEANESRDAALMEVSEMRSSFGEL-------------------RQKLEYL 314
            + I  LK++ + ANE  D  L +++E+ +S GEL                   +Q+LE +
Sbjct: 1307 IDISQLKKDAVAANERADELLKQITELSNSNGELFADFETEQELTEALLKRAEQQQLEDI 1366

Query: 315  E------AYCEELKKALRQAATHAKDSHQVNEKLGNF------------------PRRGK 350
            E      A  ++  KA+ Q     K+++   EKL  F                  P   K
Sbjct: 1367 ELLERAKAAHDKATKAVEQGDNTLKEANNTYEKLAGFQSDVQRSSESAEKALQTVPNIEK 1426

Query: 351  SIDGNGESLMPVSEEAMVEGFLQIVSEARLSVKQ 384
             I  N ESL+  +EEA+ +G  +  +EA+ + ++
Sbjct: 1427 EIQ-NAESLISQAEEAL-DGANKNANEAKKNAQE 1458


>sp|Q5TZA2|CROCC_HUMAN Rootletin OS=Homo sapiens GN=CROCC PE=1 SV=1
          Length = 2017

 Score = 32.7 bits (73), Expect = 8.9,   Method: Compositional matrix adjust.
 Identities = 40/138 (28%), Positives = 67/138 (48%), Gaps = 19/138 (13%)

Query: 279  LKRELMEAN-------ESRDAALMEVSEMRSSFGELRQKLEYLEAYCEELKKALRQAATH 331
            L+REL+EA        E R+    E  E+R S GE  ++ E L    EEL+ A+++A   
Sbjct: 1173 LRRELLEAQRKLRESQEGREVQRQEAGELRRSLGEGAKEREALRRSNEELRSAVKKA--- 1229

Query: 332  AKDSHQVNEKLGNFPRRGKSIDGNGESLMPVSEEA-MVEGFLQIVSEARLSVKQFCKTLV 390
              +S +++ KL N  +  K +    E+   V +EA  +   LQ V  +RL  ++  + L 
Sbjct: 1230 --ESERISLKLANEDKEQK-LALLEEARTAVGKEAGELRTGLQEVERSRLEARRELQELR 1286

Query: 391  AQIEETDHTLMDNLNVLL 408
             Q+      ++D+ N  L
Sbjct: 1287 RQM-----KMLDSENTRL 1299


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.315    0.128    0.369 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 212,308,449
Number of Sequences: 539616
Number of extensions: 8774208
Number of successful extensions: 55149
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 131
Number of HSP's that attempted gapping in prelim test: 53523
Number of HSP's gapped (non-prelim): 1669
length of query: 598
length of database: 191,569,459
effective HSP length: 123
effective length of query: 475
effective length of database: 125,196,691
effective search space: 59468428225
effective search space used: 59468428225
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 64 (29.3 bits)