Query 007566
Match_columns 598
No_of_seqs 120 out of 134
Neff 3.8
Searched_HMMs 46136
Date Thu Mar 28 12:21:23 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007566.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/007566hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF04859 DUF641: Plant protein 98.6 5.3E-08 1.1E-12 90.7 6.1 73 238-325 59-131 (131)
2 PF01025 GrpE: GrpE; InterPro 90.5 0.37 7.9E-06 45.4 4.4 50 538-588 109-158 (165)
3 PF08826 DMPK_coil: DMPK coile 90.3 1.8 3.9E-05 36.2 7.8 51 278-328 1-51 (61)
4 COG0576 GrpE Molecular chapero 87.5 0.75 1.6E-05 45.7 4.4 50 538-588 135-184 (193)
5 PF12325 TMF_TATA_bd: TATA ele 85.7 7.1 0.00015 36.5 9.6 73 254-327 11-86 (120)
6 PRK14151 heat shock protein Gr 84.5 1.5 3.2E-05 43.3 4.7 54 538-592 119-173 (176)
7 PRK14150 heat shock protein Gr 83.7 1.2 2.6E-05 44.3 3.9 53 539-592 138-191 (193)
8 cd00446 GrpE GrpE is the adeni 83.6 1.3 2.9E-05 41.1 3.8 50 538-588 83-132 (137)
9 PRK14158 heat shock protein Gr 82.9 2 4.4E-05 43.1 5.0 54 539-592 138-192 (194)
10 PRK14140 heat shock protein Gr 81.6 1.7 3.8E-05 43.4 4.1 48 545-592 141-189 (191)
11 PF08700 Vps51: Vps51/Vps67; 81.2 9.5 0.00021 32.1 7.9 28 295-322 58-85 (87)
12 PRK14161 heat shock protein Gr 81.0 2.6 5.6E-05 41.7 5.0 54 540-593 121-175 (178)
13 PRK14144 heat shock protein Gr 80.4 2 4.3E-05 43.4 4.0 54 539-593 143-197 (199)
14 PF15290 Syntaphilin: Golgi-lo 80.2 18 0.00039 38.6 11.0 40 281-325 78-117 (305)
15 PRK14154 heat shock protein Gr 79.6 2.7 5.8E-05 42.7 4.7 53 539-591 152-205 (208)
16 PRK14147 heat shock protein Gr 79.3 2.1 4.6E-05 42.0 3.7 49 539-588 115-163 (172)
17 PRK14145 heat shock protein Gr 79.2 2.2 4.8E-05 42.9 3.9 43 546-588 147-189 (196)
18 COG4026 Uncharacterized protei 78.9 7.3 0.00016 40.5 7.5 52 277-328 138-189 (290)
19 PRK14160 heat shock protein Gr 78.8 2.7 5.9E-05 42.7 4.4 51 539-591 157-208 (211)
20 PRK14148 heat shock protein Gr 78.5 2.6 5.6E-05 42.3 4.1 53 539-592 139-192 (195)
21 PRK14141 heat shock protein Gr 77.7 2.6 5.7E-05 42.7 3.9 49 546-594 142-191 (209)
22 PRK10325 heat shock protein Gr 77.2 2.6 5.6E-05 42.2 3.7 55 539-594 139-194 (197)
23 PRK14155 heat shock protein Gr 76.7 3.4 7.4E-05 41.9 4.4 57 539-595 115-172 (208)
24 PRK14153 heat shock protein Gr 74.7 4.2 9.2E-05 40.9 4.4 56 538-594 131-187 (194)
25 PRK14162 heat shock protein Gr 73.5 4.5 9.7E-05 40.6 4.3 52 540-592 139-192 (194)
26 PRK14139 heat shock protein Gr 73.2 4.4 9.6E-05 40.4 4.1 53 539-593 129-182 (185)
27 PF08614 ATG16: Autophagy prot 72.5 27 0.00058 34.4 9.3 47 281-327 133-183 (194)
28 PHA03162 hypothetical protein; 71.8 26 0.00057 33.7 8.7 26 303-328 14-39 (135)
29 PRK14157 heat shock protein Gr 71.5 4.1 9E-05 41.9 3.6 48 546-593 175-223 (227)
30 KOG4603 TBP-1 interacting prot 70.4 26 0.00057 35.3 8.6 64 262-328 79-142 (201)
31 COG2433 Uncharacterized conser 70.1 20 0.00044 41.7 8.9 33 296-328 475-507 (652)
32 PF05812 Herpes_BLRF2: Herpesv 69.8 6.6 0.00014 36.9 4.2 26 303-328 4-29 (118)
33 PRK14143 heat shock protein Gr 68.9 5.5 0.00012 41.2 3.9 55 539-594 167-222 (238)
34 PRK14159 heat shock protein Gr 68.0 8.8 0.00019 38.0 4.9 41 547-588 129-169 (176)
35 PF15456 Uds1: Up-regulated Du 67.8 41 0.00088 31.7 9.0 65 260-328 23-100 (124)
36 COG2433 Uncharacterized conser 66.9 54 0.0012 38.5 11.3 42 287-328 427-469 (652)
37 PHA03155 hypothetical protein; 66.5 6.9 0.00015 36.6 3.6 26 303-328 9-34 (115)
38 PF04880 NUDE_C: NUDE protein, 66.5 7.8 0.00017 38.2 4.2 43 276-318 2-47 (166)
39 KOG3119 Basic region leucine z 65.6 51 0.0011 34.5 10.1 53 276-328 196-248 (269)
40 PRK11448 hsdR type I restricti 65.5 35 0.00076 42.4 10.3 14 389-402 239-253 (1123)
41 PRK10884 SH3 domain-containing 65.3 31 0.00068 34.9 8.3 9 165-173 34-42 (206)
42 PRK14146 heat shock protein Gr 65.0 6.9 0.00015 39.9 3.6 48 546-593 159-211 (215)
43 PF07795 DUF1635: Protein of u 63.6 29 0.00062 35.8 7.7 57 261-328 3-59 (214)
44 PF00038 Filament: Intermediat 63.3 54 0.0012 33.8 9.8 52 277-328 198-249 (312)
45 PRK10884 SH3 domain-containing 62.8 29 0.00063 35.2 7.5 28 300-327 123-150 (206)
46 PRK11637 AmiB activator; Provi 62.8 47 0.001 36.3 9.7 33 296-328 97-129 (428)
47 PRK14163 heat shock protein Gr 62.4 7.8 0.00017 39.6 3.5 49 546-594 138-187 (214)
48 PHA01750 hypothetical protein 62.3 48 0.001 28.8 7.5 31 296-326 43-73 (75)
49 PRK14149 heat shock protein Gr 62.2 13 0.00028 37.4 4.9 46 547-593 142-188 (191)
50 KOG1029 Endocytic adaptor prot 62.2 86 0.0019 38.0 11.9 52 279-330 470-521 (1118)
51 PF14817 HAUS5: HAUS augmin-li 62.0 46 0.001 39.1 9.9 83 286-394 77-159 (632)
52 PRK13729 conjugal transfer pil 61.3 26 0.00056 39.8 7.5 53 268-328 71-123 (475)
53 KOG2070 Guanine nucleotide exc 60.2 88 0.0019 36.2 11.2 54 276-329 590-643 (661)
54 TIGR02047 CadR-PbrR Cd(II)/Pb( 59.8 61 0.0013 29.9 8.5 73 254-328 37-112 (127)
55 KOG4010 Coiled-coil protein TP 59.7 19 0.00041 36.6 5.5 26 303-328 59-84 (208)
56 PF12808 Mto2_bdg: Micro-tubul 59.0 26 0.00057 28.7 5.2 44 275-328 5-48 (52)
57 PRK10227 DNA-binding transcrip 57.7 60 0.0013 30.5 8.2 85 242-328 25-112 (135)
58 PF07106 TBPIP: Tat binding pr 57.6 52 0.0011 31.5 8.0 33 296-328 101-135 (169)
59 PRK00736 hypothetical protein; 56.4 57 0.0012 27.6 7.1 47 279-328 6-52 (68)
60 PF04977 DivIC: Septum formati 56.0 30 0.00066 28.3 5.4 29 300-328 22-50 (80)
61 cd01109 HTH_YyaN Helix-Turn-He 55.6 90 0.002 27.9 8.7 63 256-326 39-103 (113)
62 PF10211 Ax_dynein_light: Axon 55.0 1.1E+02 0.0023 30.5 9.9 34 295-328 127-160 (189)
63 PF04201 TPD52: Tumour protein 54.7 31 0.00067 34.2 6.0 25 304-328 45-69 (162)
64 PF08317 Spc7: Spc7 kinetochor 54.3 53 0.0012 34.9 8.2 12 394-405 290-301 (325)
65 PF04102 SlyX: SlyX; InterPro 54.1 58 0.0013 27.4 6.8 46 280-328 6-51 (69)
66 PF04380 BMFP: Membrane fusoge 54.1 40 0.00088 29.2 6.0 30 295-324 50-79 (79)
67 PRK00295 hypothetical protein; 53.9 66 0.0014 27.2 7.1 45 281-328 8-52 (68)
68 PF01166 TSC22: TSC-22/dip/bun 53.7 19 0.0004 30.4 3.6 29 296-324 15-43 (59)
69 PRK11637 AmiB activator; Provi 52.8 77 0.0017 34.7 9.3 33 296-328 90-122 (428)
70 PF08614 ATG16: Autophagy prot 52.4 69 0.0015 31.5 8.1 51 279-332 124-174 (194)
71 TIGR02044 CueR Cu(I)-responsiv 51.9 87 0.0019 28.7 8.2 73 254-328 37-112 (127)
72 PF11932 DUF3450: Protein of u 51.6 75 0.0016 32.3 8.4 33 296-328 50-82 (251)
73 PF03962 Mnd1: Mnd1 family; I 51.4 42 0.00091 33.4 6.4 77 237-328 53-129 (188)
74 cd01106 HTH_TipAL-Mta Helix-Tu 51.2 51 0.0011 29.0 6.3 62 255-323 38-101 (103)
75 PF11544 Spc42p: Spindle pole 50.2 77 0.0017 28.0 7.0 44 282-328 9-52 (76)
76 PRK10803 tol-pal system protei 49.8 66 0.0014 33.4 7.8 43 286-328 58-101 (263)
77 cd04770 HTH_HMRTR Helix-Turn-H 49.8 1.2E+02 0.0026 27.4 8.6 71 256-328 39-112 (123)
78 PF02185 HR1: Hr1 repeat; Int 49.7 1.1E+02 0.0023 25.4 7.7 49 276-328 3-59 (70)
79 PF10186 Atg14: UV radiation r 49.6 1E+02 0.0023 31.0 9.1 14 275-288 35-48 (302)
80 PF08172 CASP_C: CASP C termin 49.5 34 0.00074 35.6 5.7 44 286-329 90-134 (248)
81 PF05984 Cytomega_UL20A: Cytom 49.5 7.6 0.00017 34.9 0.9 16 521-536 1-16 (100)
82 PF09304 Cortex-I_coil: Cortex 48.7 1.3E+02 0.0028 28.2 8.6 30 299-328 41-70 (107)
83 PRK13169 DNA replication intia 48.1 41 0.00088 31.3 5.3 33 296-328 23-55 (110)
84 PF06156 DUF972: Protein of un 47.9 78 0.0017 29.2 7.1 33 296-328 23-55 (107)
85 PF07795 DUF1635: Protein of u 47.5 89 0.0019 32.3 8.1 9 276-284 3-11 (214)
86 PRK14142 heat shock protein Gr 47.5 20 0.00043 37.1 3.5 49 546-594 132-182 (223)
87 PF05615 THOC7: Tho complex su 47.4 77 0.0017 29.4 7.2 50 238-290 17-74 (139)
88 PRK14164 heat shock protein Gr 47.4 20 0.00042 36.9 3.5 33 296-328 78-110 (218)
89 PRK00888 ftsB cell division pr 46.5 45 0.00099 30.3 5.4 28 300-327 32-59 (105)
90 PF07200 Mod_r: Modifier of ru 46.5 1.7E+02 0.0038 27.2 9.4 45 281-328 44-88 (150)
91 PF04880 NUDE_C: NUDE protein, 46.5 21 0.00046 35.3 3.5 33 283-316 19-51 (166)
92 PF13851 GAS: Growth-arrest sp 45.4 85 0.0018 31.5 7.6 52 276-328 29-81 (201)
93 KOG4196 bZIP transcription fac 44.9 53 0.0012 31.7 5.7 29 295-323 88-116 (135)
94 PF06005 DUF904: Protein of un 44.7 2.1E+02 0.0045 24.8 8.7 14 297-310 20-33 (72)
95 PF12325 TMF_TATA_bd: TATA ele 44.6 1E+02 0.0023 28.9 7.5 47 278-324 16-66 (120)
96 PF13747 DUF4164: Domain of un 44.4 1E+02 0.0023 27.3 7.1 42 286-327 30-71 (89)
97 cd04785 HTH_CadR-PbrR-like Hel 44.0 1.5E+02 0.0031 27.3 8.3 72 255-328 38-112 (126)
98 PF04508 Pox_A_type_inc: Viral 43.8 23 0.00049 24.8 2.3 18 296-313 2-19 (23)
99 COG4026 Uncharacterized protei 43.7 76 0.0016 33.4 7.0 33 296-328 171-203 (290)
100 PF03962 Mnd1: Mnd1 family; I 43.7 2.1E+02 0.0045 28.6 9.9 33 296-328 63-95 (188)
101 PF13851 GAS: Growth-arrest sp 42.4 1.6E+02 0.0034 29.7 8.9 33 296-328 101-133 (201)
102 KOG1853 LIS1-interacting prote 41.7 53 0.0011 35.0 5.6 39 273-311 132-180 (333)
103 PF10205 KLRAQ: Predicted coil 41.5 2.2E+02 0.0047 26.5 8.9 37 282-328 30-66 (102)
104 PF07851 TMPIT: TMPIT-like pro 41.2 1.8E+02 0.0038 31.9 9.6 53 277-329 21-81 (330)
105 cd01108 HTH_CueR Helix-Turn-He 41.0 1.7E+02 0.0038 26.8 8.3 72 255-328 38-112 (127)
106 TIGR02051 MerR Hg(II)-responsi 40.9 1.1E+02 0.0025 28.0 7.1 69 257-328 39-109 (124)
107 KOG2264 Exostosin EXT1L [Signa 40.9 1.2E+02 0.0026 35.7 8.6 33 296-328 108-140 (907)
108 PF10475 DUF2450: Protein of u 40.7 1.4E+02 0.0031 31.1 8.6 62 260-329 32-94 (291)
109 smart00338 BRLZ basic region l 40.5 1.5E+02 0.0032 24.2 7.0 28 301-328 25-52 (65)
110 cd04783 HTH_MerR1 Helix-Turn-H 40.4 1.3E+02 0.0028 27.5 7.4 69 256-328 39-110 (126)
111 PF00170 bZIP_1: bZIP transcri 40.3 1E+02 0.0023 25.1 6.1 25 304-328 28-52 (64)
112 PRK13922 rod shape-determining 40.0 1.2E+02 0.0027 31.0 8.0 43 286-328 67-112 (276)
113 cd04787 HTH_HMRTR_unk Helix-Tu 39.9 1.7E+02 0.0037 27.1 8.2 72 255-328 38-112 (133)
114 PF05529 Bap31: B-cell recepto 39.4 1.3E+02 0.0028 29.3 7.7 32 297-328 156-187 (192)
115 PRK02793 phi X174 lysis protei 39.3 1.8E+02 0.0039 24.9 7.6 45 281-328 11-55 (72)
116 PF08606 Prp19: Prp19/Pso4-lik 39.3 88 0.0019 27.3 5.6 37 277-313 32-68 (70)
117 TIGR02043 ZntR Zn(II)-responsi 39.2 1.5E+02 0.0033 27.4 7.8 71 257-328 41-114 (131)
118 PF10392 COG5: Golgi transport 39.2 2.8E+02 0.006 25.8 9.5 56 270-328 39-98 (132)
119 PF12709 Kinetocho_Slk19: Cent 38.6 1.8E+02 0.0039 26.3 7.7 52 275-328 16-75 (87)
120 smart00787 Spc7 Spc7 kinetocho 38.5 48 0.001 35.6 4.9 11 394-404 285-295 (312)
121 cd04784 HTH_CadR-PbrR Helix-Tu 38.4 2E+02 0.0043 26.3 8.3 72 255-328 38-112 (127)
122 PRK09514 zntR zinc-responsive 38.2 1.5E+02 0.0032 27.9 7.6 71 257-328 41-114 (140)
123 KOG4571 Activating transcripti 38.0 68 0.0015 34.5 5.8 37 285-328 238-274 (294)
124 PRK15422 septal ring assembly 38.0 2.4E+02 0.0053 25.2 8.2 48 279-326 23-70 (79)
125 PF03980 Nnf1: Nnf1 ; InterPr 37.7 2.1E+02 0.0045 25.5 8.1 29 300-328 78-106 (109)
126 PF11559 ADIP: Afadin- and alp 37.3 1.3E+02 0.0028 28.2 7.1 44 281-327 55-98 (151)
127 PF04849 HAP1_N: HAP1 N-termin 37.3 1.2E+02 0.0027 32.8 7.7 34 295-328 234-267 (306)
128 PF11853 DUF3373: Protein of u 37.2 37 0.00081 38.7 4.0 32 296-328 26-57 (489)
129 PF07106 TBPIP: Tat binding pr 37.1 62 0.0013 31.0 5.0 33 296-328 73-105 (169)
130 KOG1853 LIS1-interacting prote 37.0 2.6E+02 0.0057 30.1 9.7 23 306-328 95-117 (333)
131 COG5570 Uncharacterized small 36.8 66 0.0014 26.8 4.3 49 275-327 2-51 (57)
132 PF00170 bZIP_1: bZIP transcri 36.6 1.5E+02 0.0033 24.1 6.5 32 296-327 27-58 (64)
133 PRK14156 heat shock protein Gr 36.4 45 0.00097 33.3 4.0 40 549-588 130-170 (177)
134 KOG4001 Axonemal dynein light 36.4 1.2E+02 0.0027 31.5 7.1 46 275-326 207-252 (259)
135 PRK13752 putative transcriptio 36.3 1.4E+02 0.0031 28.3 7.2 71 254-328 44-117 (144)
136 PRK04325 hypothetical protein; 36.0 2.2E+02 0.0048 24.5 7.6 45 281-328 12-56 (74)
137 PRK09413 IS2 repressor TnpA; R 35.9 69 0.0015 29.2 4.9 29 299-327 75-103 (121)
138 PRK02119 hypothetical protein; 35.4 2.4E+02 0.0051 24.3 7.7 45 281-328 12-56 (73)
139 cd04776 HTH_GnyR Helix-Turn-He 35.4 1.2E+02 0.0026 27.8 6.3 69 259-328 40-113 (118)
140 PF03670 UPF0184: Uncharacteri 35.4 84 0.0018 28.2 5.1 39 295-333 26-64 (83)
141 PF10046 BLOC1_2: Biogenesis o 34.5 2.2E+02 0.0049 25.4 7.8 31 296-326 67-97 (99)
142 PF05633 DUF793: Protein of un 34.5 89 0.0019 34.9 6.2 22 306-327 345-366 (389)
143 PRK10869 recombination and rep 34.2 1.2E+02 0.0026 34.7 7.5 19 380-398 370-388 (553)
144 PF08654 DASH_Dad2: DASH compl 33.9 1E+02 0.0023 28.2 5.6 41 283-323 2-42 (103)
145 cd00632 Prefoldin_beta Prefold 33.7 1.6E+02 0.0034 26.3 6.7 48 275-328 56-103 (105)
146 PF05266 DUF724: Protein of un 33.3 1.8E+02 0.0038 29.3 7.6 16 311-326 161-176 (190)
147 COG3883 Uncharacterized protei 32.9 3E+02 0.0064 29.4 9.5 34 370-403 128-163 (265)
148 PF06120 Phage_HK97_TLTM: Tail 32.9 1.2E+02 0.0025 32.9 6.6 52 270-326 52-105 (301)
149 PF09726 Macoilin: Transmembra 32.4 1.4E+02 0.0031 35.5 7.8 14 28-41 179-192 (697)
150 PF07889 DUF1664: Protein of u 32.3 2.2E+02 0.0048 27.1 7.7 53 276-328 59-122 (126)
151 TIGR03185 DNA_S_dndD DNA sulfu 32.2 7.5E+02 0.016 28.8 13.4 19 540-558 606-624 (650)
152 PF10224 DUF2205: Predicted co 31.6 1.3E+02 0.0027 26.7 5.5 27 296-322 24-50 (80)
153 PRK04406 hypothetical protein; 31.4 2.8E+02 0.006 24.1 7.5 45 281-328 14-58 (75)
154 KOG2264 Exostosin EXT1L [Signa 31.2 85 0.0018 36.9 5.5 47 279-328 101-147 (907)
155 PF13863 DUF4200: Domain of un 31.2 3.2E+02 0.0068 24.6 8.3 31 298-328 77-107 (126)
156 PF05983 Med7: MED7 protein; 31.0 1.5E+02 0.0032 29.0 6.5 26 300-325 136-161 (162)
157 KOG0971 Microtubule-associated 30.8 1.1E+02 0.0024 37.7 6.6 39 283-327 1013-1051(1243)
158 PF11500 Cut12: Spindle pole b 30.1 2.1E+02 0.0047 28.1 7.4 68 232-328 63-131 (152)
159 PF08317 Spc7: Spc7 kinetochor 30.1 2.3E+02 0.0051 30.2 8.3 29 297-325 225-253 (325)
160 PF14257 DUF4349: Domain of un 30.0 1.8E+02 0.0039 29.7 7.3 49 279-328 147-195 (262)
161 COG3883 Uncharacterized protei 29.9 3.4E+02 0.0074 29.0 9.3 45 277-321 55-99 (265)
162 KOG4797 Transcriptional regula 29.6 88 0.0019 29.5 4.4 28 296-323 68-95 (123)
163 PF00038 Filament: Intermediat 29.4 3E+02 0.0065 28.4 8.8 53 275-327 83-135 (312)
164 PF05278 PEARLI-4: Arabidopsis 29.3 3.2E+02 0.007 29.3 9.0 23 304-326 209-231 (269)
165 PF12718 Tropomyosin_1: Tropom 29.3 2.8E+02 0.0061 26.5 7.9 47 279-328 22-68 (143)
166 cd04779 HTH_MerR-like_sg4 Heli 29.2 2.3E+02 0.0049 26.8 7.2 26 260-286 42-69 (134)
167 PF07111 HCR: Alpha helical co 29.2 2.8E+02 0.006 33.4 9.3 77 245-328 285-364 (739)
168 KOG4677 Golgi integral membran 29.1 4.5E+02 0.0099 30.4 10.5 112 255-388 262-394 (554)
169 TIGR02894 DNA_bind_RsfA transc 29.1 1.8E+02 0.0039 29.0 6.7 33 296-328 105-137 (161)
170 PF11559 ADIP: Afadin- and alp 29.0 3.1E+02 0.0067 25.7 8.1 46 281-326 45-90 (151)
171 TIGR00606 rad50 rad50. This fa 28.9 1.4E+02 0.003 37.6 7.4 93 215-322 152-244 (1311)
172 KOG4343 bZIP transcription fac 28.8 2E+02 0.0044 33.6 7.9 35 299-333 306-340 (655)
173 COG2882 FliJ Flagellar biosynt 28.8 5.7E+02 0.012 25.1 11.0 79 290-395 18-96 (148)
174 TIGR02209 ftsL_broad cell divi 28.8 1.5E+02 0.0033 24.9 5.5 29 300-328 29-57 (85)
175 PF07888 CALCOCO1: Calcium bin 28.4 2.7E+02 0.0058 32.6 8.9 31 295-325 206-236 (546)
176 PF06005 DUF904: Protein of un 28.2 3.2E+02 0.0069 23.6 7.3 27 296-322 26-52 (72)
177 PF06818 Fez1: Fez1; InterPro 28.1 2.5E+02 0.0053 28.9 7.7 46 280-328 19-64 (202)
178 PF02403 Seryl_tRNA_N: Seryl-t 27.9 4.2E+02 0.0092 23.3 8.8 32 297-328 69-100 (108)
179 PF04111 APG6: Autophagy prote 27.8 2.4E+02 0.0053 30.2 8.0 9 487-495 250-258 (314)
180 smart00787 Spc7 Spc7 kinetocho 27.2 3.8E+02 0.0082 28.9 9.3 29 297-325 220-248 (312)
181 KOG0971 Microtubule-associated 27.1 1.9E+02 0.0042 35.8 7.7 47 281-331 399-445 (1243)
182 PF07926 TPR_MLP1_2: TPR/MLP1/ 27.0 5.2E+02 0.011 24.1 9.1 48 281-328 45-92 (132)
183 PF04799 Fzo_mitofusin: fzo-li 27.0 3.9E+02 0.0084 26.9 8.6 29 263-292 106-134 (171)
184 TIGR01950 SoxR redox-sensitive 26.7 2.4E+02 0.0052 26.8 7.0 66 260-326 43-111 (142)
185 PRK10698 phage shock protein P 26.6 2.7E+02 0.0059 28.4 7.8 32 297-328 115-146 (222)
186 PF04012 PspA_IM30: PspA/IM30 26.6 5.5E+02 0.012 25.4 9.8 33 296-328 113-145 (221)
187 cd04765 HTH_MlrA-like_sg2 Heli 26.3 95 0.0021 27.6 4.0 51 262-324 48-98 (99)
188 PF05600 DUF773: Protein of un 26.3 2.3E+02 0.0051 32.4 8.0 29 300-328 465-493 (507)
189 PF14197 Cep57_CLD_2: Centroso 26.0 4.1E+02 0.0089 22.7 7.5 67 257-324 3-69 (69)
190 PF15233 SYCE1: Synaptonemal c 25.9 2.9E+02 0.0063 26.8 7.3 55 281-338 16-70 (134)
191 PF07716 bZIP_2: Basic region 25.7 1.5E+02 0.0033 23.5 4.7 29 300-328 23-51 (54)
192 PF05667 DUF812: Protein of un 25.7 2.8E+02 0.0061 32.5 8.6 45 281-328 338-382 (594)
193 PRK04778 septation ring format 25.6 6.6E+02 0.014 28.9 11.4 34 367-404 442-475 (569)
194 TIGR00219 mreC rod shape-deter 25.5 2.4E+02 0.0051 29.8 7.3 19 310-328 92-110 (283)
195 PRK07720 fliJ flagellar biosyn 25.2 5.6E+02 0.012 23.8 11.0 93 284-403 12-104 (146)
196 PF14555 UBA_4: UBA-like domai 25.1 58 0.0013 24.8 2.1 19 389-407 18-36 (43)
197 KOG1916 Nuclear protein, conta 24.9 2.3E+02 0.0051 35.2 7.8 34 523-557 1221-1254(1283)
198 TIGR02338 gimC_beta prefoldin, 24.8 2.8E+02 0.0061 25.0 6.8 49 274-328 59-107 (110)
199 PF07716 bZIP_2: Basic region 24.7 2.9E+02 0.0063 21.9 6.1 38 286-323 16-53 (54)
200 COG5185 HEC1 Protein involved 24.7 6.5E+02 0.014 29.4 10.8 32 297-328 332-363 (622)
201 PF10805 DUF2730: Protein of u 24.7 3.1E+02 0.0066 24.9 7.0 33 296-328 66-98 (106)
202 PF06818 Fez1: Fez1; InterPro 24.6 2.5E+02 0.0053 28.9 6.9 60 269-328 29-106 (202)
203 PF11932 DUF3450: Protein of u 24.5 3.8E+02 0.0083 27.3 8.5 34 295-328 56-89 (251)
204 PF05633 DUF793: Protein of un 24.5 1.9E+02 0.0042 32.3 6.7 60 267-328 313-374 (389)
205 PRK14144 heat shock protein Gr 24.3 1.2E+02 0.0026 30.9 4.7 32 297-328 54-85 (199)
206 TIGR00634 recN DNA repair prot 24.3 2.3E+02 0.005 32.3 7.5 18 381-398 376-393 (563)
207 PRK11020 hypothetical protein; 24.3 3.1E+02 0.0067 26.1 7.0 48 262-323 5-52 (118)
208 PRK14153 heat shock protein Gr 24.3 2.2E+02 0.0048 28.9 6.6 33 296-328 41-73 (194)
209 KOG0977 Nuclear envelope prote 24.2 98 0.0021 35.9 4.6 62 264-326 251-327 (546)
210 PF06428 Sec2p: GDP/GTP exchan 24.1 1.9E+02 0.0041 26.5 5.5 20 309-328 44-63 (100)
211 cd04790 HTH_Cfa-like_unk Helix 23.8 4.4E+02 0.0095 25.7 8.4 66 256-328 40-107 (172)
212 KOG0933 Structural maintenance 23.7 3.7E+02 0.008 33.8 9.1 31 296-326 823-853 (1174)
213 PF06810 Phage_GP20: Phage min 23.4 3.5E+02 0.0075 26.3 7.5 50 275-327 24-80 (155)
214 PF10234 Cluap1: Clusterin-ass 23.4 3.6E+02 0.0079 28.7 8.2 21 306-326 194-214 (267)
215 PF15290 Syntaphilin: Golgi-lo 23.3 2.5E+02 0.0054 30.5 6.9 39 283-328 105-143 (305)
216 KOG4657 Uncharacterized conser 23.2 4.1E+02 0.0089 28.1 8.3 29 298-326 89-117 (246)
217 PF13863 DUF4200: Domain of un 23.1 5.5E+02 0.012 23.0 9.6 25 296-320 82-106 (126)
218 KOG2090 Metalloendopeptidase f 23.1 1.9E+02 0.0042 34.3 6.5 63 370-445 112-174 (704)
219 PF13600 DUF4140: N-terminal d 23.1 1.7E+02 0.0038 25.6 5.0 24 199-222 9-32 (104)
220 KOG3614 Ca2+/Mg2+-permeable ca 22.7 3E+02 0.0066 35.3 8.4 67 260-329 1109-1175(1381)
221 PRK14159 heat shock protein Gr 22.6 2E+02 0.0044 28.7 5.9 33 296-328 31-63 (176)
222 PRK14156 heat shock protein Gr 22.4 2.5E+02 0.0054 28.1 6.4 33 296-328 35-67 (177)
223 TIGR01069 mutS2 MutS2 family p 22.4 4.5E+02 0.0098 31.7 9.6 28 261-289 499-526 (771)
224 PRK09039 hypothetical protein; 22.3 3.3E+02 0.0071 29.5 7.8 16 379-394 189-204 (343)
225 PF15136 UPF0449: Uncharacteri 22.3 1.4E+02 0.0029 27.6 4.2 23 304-326 73-95 (97)
226 PF05266 DUF724: Protein of un 22.2 3.1E+02 0.0068 27.6 7.1 32 218-249 23-58 (190)
227 PRK00846 hypothetical protein; 22.1 5.2E+02 0.011 22.9 7.5 46 281-329 16-61 (77)
228 cd07602 BAR_RhoGAP_OPHN1-like 22.1 4.5E+02 0.0097 27.0 8.3 29 300-328 7-35 (207)
229 cd07705 Ig2_Necl-1 Second immu 22.1 52 0.0011 27.8 1.5 61 528-591 4-66 (83)
230 COG4467 Regulator of replicati 22.1 1.3E+02 0.0028 28.4 4.0 32 296-327 23-54 (114)
231 PF04156 IncA: IncA protein; 22.0 7E+02 0.015 24.0 9.3 67 260-327 96-162 (191)
232 PF10186 Atg14: UV radiation r 21.9 4.2E+02 0.0091 26.7 8.1 29 297-325 79-107 (302)
233 PF10805 DUF2730: Protein of u 21.8 5.1E+02 0.011 23.5 7.8 26 301-326 64-89 (106)
234 KOG2080 Uncharacterized conser 21.6 84 0.0018 38.5 3.4 68 426-502 572-650 (1295)
235 PF09278 MerR-DNA-bind: MerR, 21.2 4.2E+02 0.0092 21.0 6.5 48 268-323 10-57 (65)
236 cd01110 HTH_SoxR Helix-Turn-He 21.2 3.1E+02 0.0067 25.8 6.6 67 259-326 42-111 (139)
237 PRK15422 septal ring assembly 21.2 4.8E+02 0.01 23.4 7.1 6 279-284 9-14 (79)
238 PF05278 PEARLI-4: Arabidopsis 21.2 3.6E+02 0.0079 28.9 7.6 33 296-328 208-240 (269)
239 cd01107 HTH_BmrR Helix-Turn-He 21.0 2.5E+02 0.0055 25.0 5.7 65 255-326 39-106 (108)
240 PRK10947 global DNA-binding tr 21.0 4.8E+02 0.01 25.1 7.8 34 260-293 10-43 (135)
241 PF01486 K-box: K-box region; 21.0 3E+02 0.0065 24.3 6.1 27 300-326 73-99 (100)
242 PF15058 Speriolin_N: Sperioli 21.0 1.7E+02 0.0036 30.1 4.9 24 306-330 23-46 (200)
243 PRK00409 recombination and DNA 21.0 4.9E+02 0.011 31.4 9.5 28 261-289 504-531 (782)
244 TIGR02977 phageshock_pspA phag 21.0 4.1E+02 0.0089 26.7 7.8 32 297-328 101-132 (219)
245 PF14389 Lzipper-MIP1: Leucine 20.9 5.5E+02 0.012 22.7 7.6 28 299-326 58-85 (88)
246 COG1842 PspA Phage shock prote 20.8 3.9E+02 0.0086 27.6 7.7 29 298-326 116-144 (225)
247 PF05377 FlaC_arch: Flagella a 20.7 3.1E+02 0.0067 23.0 5.6 20 297-316 16-35 (55)
248 PF02050 FliJ: Flagellar FliJ 20.7 5.2E+02 0.011 21.8 7.8 42 362-403 44-85 (123)
249 TIGR03185 DNA_S_dndD DNA sulfu 20.5 4.2E+02 0.009 30.9 8.7 12 548-559 585-596 (650)
250 PF13815 Dzip-like_N: Iguana/D 20.5 4.6E+02 0.0099 24.0 7.3 17 306-322 98-114 (118)
251 COG1579 Zn-ribbon protein, pos 20.5 4.3E+02 0.0093 27.8 7.9 47 279-325 94-140 (239)
252 PF13815 Dzip-like_N: Iguana/D 20.4 5.1E+02 0.011 23.8 7.6 15 309-323 94-108 (118)
253 PF03087 DUF241: Arabidopsis p 20.2 9.4E+02 0.02 24.6 11.1 43 274-328 56-98 (231)
254 COG0216 PrfA Protein chain rel 20.2 4.3E+02 0.0093 29.5 8.1 25 307-332 81-105 (363)
255 PF10482 CtIP_N: Tumour-suppre 20.2 3.9E+02 0.0085 25.5 6.8 62 260-325 46-119 (120)
256 PF06785 UPF0242: Uncharacteri 20.1 2.7E+02 0.0059 30.9 6.6 45 281-328 130-174 (401)
257 TIGR02169 SMC_prok_A chromosom 20.1 5.4E+02 0.012 31.0 9.7 6 578-583 653-658 (1164)
258 PRK05689 fliJ flagellar biosyn 20.1 7E+02 0.015 23.1 11.1 46 283-328 11-56 (147)
259 PRK10698 phage shock protein P 20.1 3E+02 0.0064 28.1 6.6 36 293-328 97-132 (222)
260 PHA01750 hypothetical protein 20.1 2.5E+02 0.0054 24.6 5.0 50 274-328 19-68 (75)
No 1
>PF04859 DUF641: Plant protein of unknown function (DUF641); InterPro: IPR006943 This conserved region is found in a number of plant proteins of unknown function.
Probab=98.62 E-value=5.3e-08 Score=90.75 Aligned_cols=73 Identities=22% Similarity=0.313 Sum_probs=64.4
Q ss_pred ccccccccccccCCCCCCCCccchhHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhHHHHHHHHHhhHHHHHHHHHHHHHH
Q 007566 238 VLSWLFPRLKKKHKSENSPNRTESEEVSQVFKDLGILSIETLKRELMEANESRDAALMEVSEMRSSFGELRQKLEYLEAY 317 (598)
Q Consensus 238 ~~~~l~~~~~kk~~~~~s~~~ae~eE~q~llkt~~i~sie~L~~kL~~a~~~RDaa~~Ei~~lk~sl~eL~~KL~~Le~~ 317 (598)
-||.+|-+-..+..|..+.+.++++|+|++|++|+| +.+||+++++.||+ ||. .|++||+++.+.
T Consensus 59 ~LK~~y~~~~~~~~~~~~~l~a~~~e~qsli~~yE~-----~~~kLe~e~~~Kds---ei~-------~Lr~~L~~~~~~ 123 (131)
T PF04859_consen 59 ELKRRYRKKQSDPSPQVARLAAEIQEQQSLIKTYEI-----VVKKLEAELRAKDS---EID-------RLREKLDELNRA 123 (131)
T ss_pred HHHHHHHcCCCCCCccccccccchHHHHHHHHHHHH-----HHHHHHHHHHHHHH---HHH-------HHHHHHHHHHHH
Confidence 467888877777776678899999999999999999 67899999999999 565 889999999999
Q ss_pred HHHHHHHH
Q 007566 318 CEELKKAL 325 (598)
Q Consensus 318 ~~~Lkk~L 325 (598)
|..|+++|
T Consensus 124 n~~Lekrl 131 (131)
T PF04859_consen 124 NKSLEKRL 131 (131)
T ss_pred HHHhhccC
Confidence 99999986
No 2
>PF01025 GrpE: GrpE; InterPro: IPR000740 Molecular chaperones are a diverse family of proteins that function to protect proteins in the intracellular milieu from irreversible aggregation during synthesis and in times of cellular stress. The bacterial molecular chaperone DnaK is an enzyme that couples cycles of ATP binding, hydrolysis, and ADP release by an N-terminal ATP-hydrolysing domain to cycles of sequestration and release of unfolded proteins by a C-terminal substrate binding domain. In prokaryotes the grpE protein. Dimeric GrpE is the co-chaperone for DnaK, and acts as a nucleotide exchange factor, stimulating the rate of ADP release 5000-fold []. DnaK is itself a weak ATPase; ATP hydrolysis by DnaK is stimulated by its interaction with another co-chaperone, DnaJ. Thus the co-chaperones DnaJ and GrpE are capable of tightly regulating the nucleotide-bound and substrate-bound state of DnaK in ways that are necessary for the normal housekeeping functions and stress-related functions of the DnaK molecular chaperone cycle. The X-ray crystal structure of GrpE in complex with the ATPase domain of DnaK revealed that GrpE is an asymmetric homodimer, bent in a manner that favours extensive contacts with only one DnaKATPase monomer []. GrpE does not actively compete for the atomic positions occupied by the nucleotide. GrpE and ADP mutually reduce one another's affinity for DnaK 200-fold, and ATP instantly dissociates GrpE from DnaK.; GO: 0000774 adenyl-nucleotide exchange factor activity, 0042803 protein homodimerization activity, 0051087 chaperone binding, 0006457 protein folding; PDB: 3A6M_A 4ANI_A 1DKG_B.
Probab=90.45 E-value=0.37 Score=45.35 Aligned_cols=50 Identities=18% Similarity=0.270 Sum_probs=33.7
Q ss_pred CceeEEecCCCccchhhhhhhccccccCCCCCeEEEEeeCCceeCCeEEEe
Q 007566 538 PLGILRVEDNRSFDAHYMEDMLMDRQKSHGSSRVKIMVMPGFYVQDKVLRC 588 (598)
Q Consensus 538 ~asIFrV~rG~~Fs~vYMEsVv~~~~~~~~~~~VgftV~PGFkVg~tVIKc 588 (598)
.+..|.+. |..|||.+||-|....+....+..|.=.|.|||++++.||+-
T Consensus 109 Gv~~i~~~-G~~FDp~~heav~~~~~~~~~~~~I~~v~~~GY~~~~rvlRp 158 (165)
T PF01025_consen 109 GVEEIEPV-GEPFDPNLHEAVETVPDPDKEPGTIVEVVRPGYRLGGRVLRP 158 (165)
T ss_dssp TEEEE--T-SSB--TTTEEEEEEECSSSS-CTBEEEECC-EEEETTEEEE-
T ss_pred CCEecCCC-CCCCCHHHheeheecCcCCCCcCeEEEEEecCEEECCEEeee
Confidence 45666676 999999999998653333344567888999999999999874
No 3
>PF08826 DMPK_coil: DMPK coiled coil domain like; InterPro: IPR014930 This domain is found in the myotonic dystrophy protein kinase (DMPK) and adopts a coiled coil structure. It plays a role in dimerisation []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 1WT6_D.
Probab=90.32 E-value=1.8 Score=36.23 Aligned_cols=51 Identities=20% Similarity=0.244 Sum_probs=44.5
Q ss_pred HHHHHHHHHHhhhhhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007566 278 TLKRELMEANESRDAALMEVSEMRSSFGELRQKLEYLEAYCEELKKALRQA 328 (598)
Q Consensus 278 ~L~~kL~~a~~~RDaa~~Ei~~lk~sl~eL~~KL~~Le~~~~~Lkk~L~q~ 328 (598)
+|..-|++++++|..--+|+...|.+--.+..+|++.+.+|.+|...|+..
T Consensus 1 elQsaL~~EirakQ~~~eEL~kvk~~n~~~e~kLqeaE~rn~eL~~ei~~L 51 (61)
T PF08826_consen 1 ELQSALEAEIRAKQAIQEELTKVKSANLAFESKLQEAEKRNRELEQEIERL 51 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 366778999999999888999999999999999999999999998887654
No 4
>COG0576 GrpE Molecular chaperone GrpE (heat shock protein) [Posttranslational modification, protein turnover, chaperones]
Probab=87.50 E-value=0.75 Score=45.74 Aligned_cols=50 Identities=18% Similarity=0.274 Sum_probs=39.0
Q ss_pred CceeEEecCCCccchhhhhhhccccccCCCCCeEEEEeeCCceeCCeEEEe
Q 007566 538 PLGILRVEDNRSFDAHYMEDMLMDRQKSHGSSRVKIMVMPGFYVQDKVLRC 588 (598)
Q Consensus 538 ~asIFrV~rG~~Fs~vYMEsVv~~~~~~~~~~~VgftV~PGFkVg~tVIKc 588 (598)
.+.-|.+ .|..|||.++|-|....+....+..|.-.+-.||++++.||+-
T Consensus 135 Gv~~i~~-~Ge~FDP~~HeAv~~~~~~~~~~~tVv~v~qkGY~l~dRVLRp 184 (193)
T COG0576 135 GVEEIGP-EGEKFDPNLHEAVQRVESEDVEPNTVVEVLQKGYKLNDRVLRP 184 (193)
T ss_pred CCEEeCC-CCCCCCHHHhhheeeecCCCCCCCeEEEEeecCeeeCCEeccc
Confidence 3556666 7999999999998654333444567888889999999999984
No 5
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=85.71 E-value=7.1 Score=36.51 Aligned_cols=73 Identities=25% Similarity=0.337 Sum_probs=53.8
Q ss_pred CCCCccchhHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhHHHHHHHHHhhHHHHH---HHHHHHHHHHHHHHHHHHH
Q 007566 254 NSPNRTESEEVSQVFKDLGILSIETLKRELMEANESRDAALMEVSEMRSSFGELR---QKLEYLEAYCEELKKALRQ 327 (598)
Q Consensus 254 ~s~~~ae~eE~q~llkt~~i~sie~L~~kL~~a~~~RDaa~~Ei~~lk~sl~eL~---~KL~~Le~~~~~Lkk~L~q 327 (598)
..|+...++.+++-||..+. =+..++.+|..-...||.+-+||.++....++++ .++..|+....+|+.+..-
T Consensus 11 ~~~~~~~ve~L~s~lr~~E~-E~~~l~~el~~l~~~r~~l~~Eiv~l~~~~e~~~~~~~~~~~L~~el~~l~~ry~t 86 (120)
T PF12325_consen 11 GGPSVQLVERLQSQLRRLEG-ELASLQEELARLEAERDELREEIVKLMEENEELRALKKEVEELEQELEELQQRYQT 86 (120)
T ss_pred CCchHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56667789999999999987 6678999999999999999899887776665443 3344445555555554443
No 6
>PRK14151 heat shock protein GrpE; Provisional
Probab=84.53 E-value=1.5 Score=43.30 Aligned_cols=54 Identities=17% Similarity=0.308 Sum_probs=39.3
Q ss_pred CceeEEecCCCccchhhhhhhccccccCCCCCeEEEEeeCCceeCCeEEE-eEEEe
Q 007566 538 PLGILRVEDNRSFDAHYMEDMLMDRQKSHGSSRVKIMVMPGFYVQDKVLR-CKVLC 592 (598)
Q Consensus 538 ~asIFrV~rG~~Fs~vYMEsVv~~~~~~~~~~~VgftV~PGFkVg~tVIK-crVYL 592 (598)
.+..+.. .|..|||.++|-|.........+..|.=.+-+||++++.||+ ++|-+
T Consensus 119 Gv~~i~~-~G~~FDP~~HEAv~~~~~~~~~~gtI~~v~qkGY~l~dRvLRpA~V~V 173 (176)
T PRK14151 119 QLEAVDP-HGEPFNPEHHQAMAMQESADVEPNSVLKVFQKGYLLNGRLLRPAMVVV 173 (176)
T ss_pred CCEEeCC-CCCCCCHHHhhcceeeCCCCCCcCeEEEEeeCCcEECCEEecCcEEEe
Confidence 3455555 699999999999865433333456777788999999999997 45544
No 7
>PRK14150 heat shock protein GrpE; Provisional
Probab=83.70 E-value=1.2 Score=44.34 Aligned_cols=53 Identities=15% Similarity=0.388 Sum_probs=38.3
Q ss_pred ceeEEecCCCccchhhhhhhccccccCCCCCeEEEEeeCCceeCCeEEE-eEEEe
Q 007566 539 LGILRVEDNRSFDAHYMEDMLMDRQKSHGSSRVKIMVMPGFYVQDKVLR-CKVLC 592 (598)
Q Consensus 539 asIFrV~rG~~Fs~vYMEsVv~~~~~~~~~~~VgftV~PGFkVg~tVIK-crVYL 592 (598)
+..+.+ .|..|||.++|-|.........+..|--.+-+||+++++||+ ++|-+
T Consensus 138 v~~i~~-~G~~FDP~~HeAv~~~~~~~~~~gtI~~v~q~GY~l~drvLRpA~V~V 191 (193)
T PRK14150 138 VEVVGP-VGEPFNPEVHQAISMQESEDHEPNTVMMVMQKGYTLNGRLLRPAMVMV 191 (193)
T ss_pred CeeeCC-CCCCCCHhHcceeeeeCCCCCCcCEEEEEeeCCeEeCCEEecceEEEe
Confidence 444554 599999999999854333333356777888999999999997 45544
No 8
>cd00446 GrpE GrpE is the adenine nucleotide exchange factor of DnaK (Hsp70)-type ATPases. The GrpE dimer binds to the ATPase domain of Hsp70 catalyzing the dissociation of ADP, which enables rebinding of ATP, one step in the Hsp70 reaction cycle in protein folding. In eukaryotes, only the mitochondrial Hsp70, not the cytosolic form, is GrpE dependent.
Probab=83.58 E-value=1.3 Score=41.08 Aligned_cols=50 Identities=20% Similarity=0.293 Sum_probs=36.8
Q ss_pred CceeEEecCCCccchhhhhhhccccccCCCCCeEEEEeeCCceeCCeEEEe
Q 007566 538 PLGILRVEDNRSFDAHYMEDMLMDRQKSHGSSRVKIMVMPGFYVQDKVLRC 588 (598)
Q Consensus 538 ~asIFrV~rG~~Fs~vYMEsVv~~~~~~~~~~~VgftV~PGFkVg~tVIKc 588 (598)
.+..+.+. |..|||.++|-|.........+..|.=.+.|||++++.||+-
T Consensus 83 Gv~~i~~~-g~~FDp~~Heav~~~~~~~~~~~~I~~v~~~GY~~~~rvlRp 132 (137)
T cd00446 83 GVEKIEPE-GEPFDPNLHEAVMQVPSPDVEPGTVVEVLQKGYKLGDRVLRP 132 (137)
T ss_pred CCEEECCC-CCCCCHHHheeeeeecCCCCCcCEEEEEeecCeEECCEEecc
Confidence 34455553 679999999998553333344567888999999999999873
No 9
>PRK14158 heat shock protein GrpE; Provisional
Probab=82.88 E-value=2 Score=43.07 Aligned_cols=54 Identities=19% Similarity=0.328 Sum_probs=38.4
Q ss_pred ceeEEecCCCccchhhhhhhccccccCCCCCeEEEEeeCCceeCCeEEEe-EEEe
Q 007566 539 LGILRVEDNRSFDAHYMEDMLMDRQKSHGSSRVKIMVMPGFYVQDKVLRC-KVLC 592 (598)
Q Consensus 539 asIFrV~rG~~Fs~vYMEsVv~~~~~~~~~~~VgftV~PGFkVg~tVIKc-rVYL 592 (598)
+..+....|..|||.+.|-|....+....+..|.-.+-+|+++++.||+- +|-+
T Consensus 138 v~~I~~~~G~~FDP~~HEAv~~~~~~~~~~gtVv~v~qkGY~l~dRVLRpA~V~V 192 (194)
T PRK14158 138 VTPVEAEKGTPFDPAYHQAMCQVESAEQEPNTVVAVFQKGYLLNERLLRPAMVSV 192 (194)
T ss_pred CEEecCCCCCCCChHHhhhheeecCCCCCcCEEEEEeeCCcEeCCEEeecceeEe
Confidence 33344345999999999988653333334567888899999999999973 4443
No 10
>PRK14140 heat shock protein GrpE; Provisional
Probab=81.65 E-value=1.7 Score=43.40 Aligned_cols=48 Identities=21% Similarity=0.351 Sum_probs=35.6
Q ss_pred cCCCccchhhhhhhccccccCCCCCeEEEEeeCCceeCCeEEEe-EEEe
Q 007566 545 EDNRSFDAHYMEDMLMDRQKSHGSSRVKIMVMPGFYVQDKVLRC-KVLC 592 (598)
Q Consensus 545 ~rG~~Fs~vYMEsVv~~~~~~~~~~~VgftV~PGFkVg~tVIKc-rVYL 592 (598)
..|..|||.++|.|..-.+....+..|.-.+-+|++++++||+- +|-+
T Consensus 141 ~~Ge~FDP~~HEAv~~~~~~~~~~gtVv~V~qkGY~l~dRVLRpA~V~V 189 (191)
T PRK14140 141 AVGEQFDPNLHQAVMQDEDEDFESNEVVEELQKGYKLKDRVIRPSMVKV 189 (191)
T ss_pred CCCCCCChHHhccceeeCCCCCCcCeEEEEeeCCeEeCCEEecCcEEEe
Confidence 46999999999998543333333567778889999999999973 4433
No 11
>PF08700 Vps51: Vps51/Vps67; InterPro: IPR014812 The VFT tethering complex (also known as GARP complex, Golgi associated retrograde protein complex, Vps53 tethering complex) is a conserved eukaryotic docking complex which is involved in recycling of proteins from endosomes to the late Golgi. Vps51 (also known as Vps67) is a subunit of VFT and interacts with the SNARE Tlg1 [].
Probab=81.23 E-value=9.5 Score=32.14 Aligned_cols=28 Identities=32% Similarity=0.440 Sum_probs=20.0
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHH
Q 007566 295 MEVSEMRSSFGELRQKLEYLEAYCEELK 322 (598)
Q Consensus 295 ~Ei~~lk~sl~eL~~KL~~Le~~~~~Lk 322 (598)
+||..|+..+..|+..|..+...++.|.
T Consensus 58 ~~I~~m~~~~~~l~~~l~~l~~~~~~l~ 85 (87)
T PF08700_consen 58 DEISSMENDLSELRNLLSELQQSIQSLQ 85 (87)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 5677777777777777777777776654
No 12
>PRK14161 heat shock protein GrpE; Provisional
Probab=81.00 E-value=2.6 Score=41.68 Aligned_cols=54 Identities=17% Similarity=0.311 Sum_probs=38.9
Q ss_pred eeEEecCCCccchhhhhhhccccccCCCCCeEEEEeeCCceeCCeEEE-eEEEee
Q 007566 540 GILRVEDNRSFDAHYMEDMLMDRQKSHGSSRVKIMVMPGFYVQDKVLR-CKVLCR 593 (598)
Q Consensus 540 sIFrV~rG~~Fs~vYMEsVv~~~~~~~~~~~VgftV~PGFkVg~tVIK-crVYLs 593 (598)
..+....|..|||.+.|-|....+....+..|.=.+-+|+++++.||+ ++|-++
T Consensus 121 ~~I~~~~G~~FDP~~HEAv~~~~~~~~~~gtVi~v~q~GY~l~dRVLRpA~V~Va 175 (178)
T PRK14161 121 EEIKPEIGSMFDYNLHNAISQIEHPDHAPNSIITLMQSGYKIRDRLLRPATVQVV 175 (178)
T ss_pred EEecCCCCCCCChHHhhhheeeCCCCCCcCEEEEEeeCCcEeCCEeecCceEEeC
Confidence 334344599999999999865433333456788889999999999997 445443
No 13
>PRK14144 heat shock protein GrpE; Provisional
Probab=80.35 E-value=2 Score=43.37 Aligned_cols=54 Identities=20% Similarity=0.356 Sum_probs=39.4
Q ss_pred ceeEEecCCCccchhhhhhhccccccCCCCCeEEEEeeCCceeCCeEEE-eEEEee
Q 007566 539 LGILRVEDNRSFDAHYMEDMLMDRQKSHGSSRVKIMVMPGFYVQDKVLR-CKVLCR 593 (598)
Q Consensus 539 asIFrV~rG~~Fs~vYMEsVv~~~~~~~~~~~VgftV~PGFkVg~tVIK-crVYLs 593 (598)
+..+.. .|..|||.++|-|.........+..|.-.+-+|++++++||+ ++|-++
T Consensus 143 V~~I~~-~G~~FDP~~HEAv~~~~~~~~~~gtVv~V~qkGY~l~dRVLRpA~V~Vs 197 (199)
T PRK14144 143 VEQIDP-LGQTFDPQQHEAMSMQPAPGAPPNSVITVFQKGYKLSDRVIRPARVIVS 197 (199)
T ss_pred CEEeCC-CCCCCChhHhceeeeeCCCCCCcCeEEEEeeCCcEECCEEecccEEEec
Confidence 334443 599999999999865333334456788899999999999997 455554
No 14
>PF15290 Syntaphilin: Golgi-localised syntaxin-1-binding clamp
Probab=80.22 E-value=18 Score=38.64 Aligned_cols=40 Identities=23% Similarity=0.513 Sum_probs=28.0
Q ss_pred HHHHHHHhhhhhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Q 007566 281 RELMEANESRDAALMEVSEMRSSFGELRQKLEYLEAYCEELKKAL 325 (598)
Q Consensus 281 ~kL~~a~~~RDaa~~Ei~~lk~sl~eL~~KL~~Le~~~~~Lkk~L 325 (598)
++-+..++.||+ ||.+||.-|..+++.- .|-+|++.+.+|
T Consensus 78 kes~~~l~dRet---EI~eLksQL~RMrEDW--IEEECHRVEAQL 117 (305)
T PF15290_consen 78 KESENRLHDRET---EIDELKSQLARMREDW--IEEECHRVEAQL 117 (305)
T ss_pred HHHHHHHHhhHH---HHHHHHHHHHHHHHHH--HHHHHHHHHHHH
Confidence 333445668898 6888999999888764 556777766555
No 15
>PRK14154 heat shock protein GrpE; Provisional
Probab=79.57 E-value=2.7 Score=42.67 Aligned_cols=53 Identities=17% Similarity=0.367 Sum_probs=38.0
Q ss_pred ceeEEecCCCccchhhhhhhccccccCCCCCeEEEEeeCCceeCCeEEEe-EEE
Q 007566 539 LGILRVEDNRSFDAHYMEDMLMDRQKSHGSSRVKIMVMPGFYVQDKVLRC-KVL 591 (598)
Q Consensus 539 asIFrV~rG~~Fs~vYMEsVv~~~~~~~~~~~VgftV~PGFkVg~tVIKc-rVY 591 (598)
+..+....|..|||.+.|-|.........+..|.=.+-+||++++.||+- +|-
T Consensus 152 Ve~I~~~~G~~FDP~~HEAv~~~~~~~~~~gtVveV~qkGY~l~dRVLRPA~V~ 205 (208)
T PRK14154 152 VQVINPNPGDPFDPALHEAMSVQAVPDAKPDTIIQVLQKGYQLNGRVLRAARVI 205 (208)
T ss_pred CEEecCCCCCCCChhHhheeeeeCCCCCCcCEEEEEeeCCcEeCCEEecceEEE
Confidence 34444456999999999998543322333457888899999999999973 443
No 16
>PRK14147 heat shock protein GrpE; Provisional
Probab=79.27 E-value=2.1 Score=42.00 Aligned_cols=49 Identities=14% Similarity=0.293 Sum_probs=36.6
Q ss_pred ceeEEecCCCccchhhhhhhccccccCCCCCeEEEEeeCCceeCCeEEEe
Q 007566 539 LGILRVEDNRSFDAHYMEDMLMDRQKSHGSSRVKIMVMPGFYVQDKVLRC 588 (598)
Q Consensus 539 asIFrV~rG~~Fs~vYMEsVv~~~~~~~~~~~VgftV~PGFkVg~tVIKc 588 (598)
+..+.. .|..|||.+.|-|.........+..|.=.+-+|+++++.||+-
T Consensus 115 v~~i~~-~G~~FDP~~HeAv~~~~~~~~~~g~Vv~v~qkGY~l~~RvLRp 163 (172)
T PRK14147 115 LTLLDP-VGQPFNPEHHQAISQGEAEGVAPGHVVQVFQKGYLLNERLLRP 163 (172)
T ss_pred CEEeCC-CCCCCChHHhceeeeecCCCCCcCEEEEEeeCCcEeCCEeccC
Confidence 344443 5999999999998653333334567888899999999999984
No 17
>PRK14145 heat shock protein GrpE; Provisional
Probab=79.21 E-value=2.2 Score=42.90 Aligned_cols=43 Identities=19% Similarity=0.420 Sum_probs=33.9
Q ss_pred CCCccchhhhhhhccccccCCCCCeEEEEeeCCceeCCeEEEe
Q 007566 546 DNRSFDAHYMEDMLMDRQKSHGSSRVKIMVMPGFYVQDKVLRC 588 (598)
Q Consensus 546 rG~~Fs~vYMEsVv~~~~~~~~~~~VgftV~PGFkVg~tVIKc 588 (598)
.|..|||.+.|-|....+....+..|.=.+-+|++++++||+-
T Consensus 147 ~Ge~FDP~~HEAv~~~~~~~~~~gtVv~V~qkGY~l~dRVLRP 189 (196)
T PRK14145 147 EGQIFDPYKHHAVMQEEVEGKQPNEIIEVFQKGYYLKDKVIRP 189 (196)
T ss_pred CCCCCCchhhheeeeeCCCCCCcCEEEEEeeCCcEeCCEeecc
Confidence 5999999999998643333334567778899999999999984
No 18
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=78.94 E-value=7.3 Score=40.53 Aligned_cols=52 Identities=27% Similarity=0.480 Sum_probs=43.6
Q ss_pred HHHHHHHHHHHhhhhhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007566 277 ETLKRELMEANESRDAALMEVSEMRSSFGELRQKLEYLEAYCEELKKALRQA 328 (598)
Q Consensus 277 e~L~~kL~~a~~~RDaa~~Ei~~lk~sl~eL~~KL~~Le~~~~~Lkk~L~q~ 328 (598)
++++.||++....+.+-+.|..++.+.+.++++.|.+|+..++.|++.++..
T Consensus 138 ee~kekl~E~~~EkeeL~~eleele~e~ee~~erlk~le~E~s~LeE~~~~l 189 (290)
T COG4026 138 EELKEKLEELQKEKEELLKELEELEAEYEEVQERLKRLEVENSRLEEMLKKL 189 (290)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4578888887777777777888899999999999999999999998888765
No 19
>PRK14160 heat shock protein GrpE; Provisional
Probab=78.82 E-value=2.7 Score=42.71 Aligned_cols=51 Identities=18% Similarity=0.327 Sum_probs=35.9
Q ss_pred ceeEEecCCCccchhhhhhhccccccCCCCCeEEEEeeCCceeCCeEEEe-EEE
Q 007566 539 LGILRVEDNRSFDAHYMEDMLMDRQKSHGSSRVKIMVMPGFYVQDKVLRC-KVL 591 (598)
Q Consensus 539 asIFrV~rG~~Fs~vYMEsVv~~~~~~~~~~~VgftV~PGFkVg~tVIKc-rVY 591 (598)
+..+.. .| .|||.+.|-|....+....+..|.-.+-+|+++|+.||+. +|-
T Consensus 157 Ve~I~~-~G-~FDP~~HEAv~~~~~~e~~~gtVveV~qkGY~l~dRVLRpA~V~ 208 (211)
T PRK14160 157 VEEIST-EG-EFDPNLHNAVMHVEDENYGENEIVEVFQKGYKRGDKVIRYSMVK 208 (211)
T ss_pred CEEeCC-CC-CCChHHhceeeeeCCCCCCcCeEEEEeeCCcEeCCEeeecceEE
Confidence 333444 36 8999999998654333334557778899999999999984 443
No 20
>PRK14148 heat shock protein GrpE; Provisional
Probab=78.45 E-value=2.6 Score=42.34 Aligned_cols=53 Identities=19% Similarity=0.318 Sum_probs=38.0
Q ss_pred ceeEEecCCCccchhhhhhhccccccCCCCCeEEEEeeCCceeCCeEEEe-EEEe
Q 007566 539 LGILRVEDNRSFDAHYMEDMLMDRQKSHGSSRVKIMVMPGFYVQDKVLRC-KVLC 592 (598)
Q Consensus 539 asIFrV~rG~~Fs~vYMEsVv~~~~~~~~~~~VgftV~PGFkVg~tVIKc-rVYL 592 (598)
+..+.. .|..|||.+.|-|..-.+....+..|.=.+-+|+++++.||+- +|-+
T Consensus 139 v~~I~~-~G~~FDP~~HEAv~~~~~~~~~~gtVv~V~qkGY~l~dRVLRpA~V~V 192 (195)
T PRK14148 139 VEELDP-KGEKFDPNLHEAMAMIPNPEFEDNTIFDVFQKGYMLNGRIVRAAKVVI 192 (195)
T ss_pred CEEeCC-CCCCCChhHhheeeeeCCCCCCcCEEEEEeeCCcEeCCEeeeccEEEe
Confidence 344444 4999999999998653333333456777889999999999974 4544
No 21
>PRK14141 heat shock protein GrpE; Provisional
Probab=77.69 E-value=2.6 Score=42.73 Aligned_cols=49 Identities=20% Similarity=0.349 Sum_probs=36.9
Q ss_pred CCCccchhhhhhhccccccCCCCCeEEEEeeCCceeCCeEEE-eEEEeee
Q 007566 546 DNRSFDAHYMEDMLMDRQKSHGSSRVKIMVMPGFYVQDKVLR-CKVLCRY 594 (598)
Q Consensus 546 rG~~Fs~vYMEsVv~~~~~~~~~~~VgftV~PGFkVg~tVIK-crVYLs~ 594 (598)
.|..|||.+.|-|.........+..|.=.+-+||+++++||+ ++|-++.
T Consensus 142 ~Ge~FDP~~HEAv~~~~~~~~~~gtVv~V~qkGY~l~dRVLRpA~V~Vsk 191 (209)
T PRK14141 142 EGQKFDPNFHQAMFEVPNPDVPNNTVVQVVQAGYTIGERVLRPAMVGVAK 191 (209)
T ss_pred CCCCCChHHhceeeeecCCCCCcCEEEEEeeCCcEeCCEeecccEEEECC
Confidence 599999999998864333223345777889999999999998 4666654
No 22
>PRK10325 heat shock protein GrpE; Provisional
Probab=77.24 E-value=2.6 Score=42.19 Aligned_cols=55 Identities=15% Similarity=0.266 Sum_probs=38.9
Q ss_pred ceeEEecCCCccchhhhhhhccccccCCCCCeEEEEeeCCceeCCeEEE-eEEEeee
Q 007566 539 LGILRVEDNRSFDAHYMEDMLMDRQKSHGSSRVKIMVMPGFYVQDKVLR-CKVLCRY 594 (598)
Q Consensus 539 asIFrV~rG~~Fs~vYMEsVv~~~~~~~~~~~VgftV~PGFkVg~tVIK-crVYLs~ 594 (598)
+..+. ..|..|||.+.|-|.........+..|.-.+-+|++++++||+ ++|-++.
T Consensus 139 v~~i~-~~G~~FDP~~HEAv~~~~~~~~~~~~Vv~v~qkGY~l~drvlRpA~V~Vsk 194 (197)
T PRK10325 139 VEVIA-ETNVPLDPNVHQAIAMVESDDVAPGNVLGIMQKGYTLNGRTIRAAMVTVAK 194 (197)
T ss_pred CeeeC-CCCCCCChhHhceeeeeCCCCCCcCeEEEEeeCCcEeCCEeccCceEEeCC
Confidence 34444 3599999999999865333233345666788999999999997 5666543
No 23
>PRK14155 heat shock protein GrpE; Provisional
Probab=76.68 E-value=3.4 Score=41.87 Aligned_cols=57 Identities=18% Similarity=0.290 Sum_probs=41.6
Q ss_pred ceeEEecCCCccchhhhhhhccccccCCCCCeEEEEeeCCceeCCeEEE-eEEEeeec
Q 007566 539 LGILRVEDNRSFDAHYMEDMLMDRQKSHGSSRVKIMVMPGFYVQDKVLR-CKVLCRYK 595 (598)
Q Consensus 539 asIFrV~rG~~Fs~vYMEsVv~~~~~~~~~~~VgftV~PGFkVg~tVIK-crVYLs~~ 595 (598)
+..+.+..|..|||.+.|-|.........+..|.=.+-+|++++++||+ ++|-++.+
T Consensus 115 V~~I~~~~G~~FDP~~HEAv~~~~~~~~~~gtVi~V~qkGY~l~dRVLRPA~V~Vak~ 172 (208)
T PRK14155 115 LKKIDPAKGDKFDPHLHQAMMEQPSTEVAAGGVLQVMQAGYELMGRLVRPAMVAVAAK 172 (208)
T ss_pred CceecCCCCCCCChhHhceeeeecCCCCCcCeEEEEeeCCeEeCCEeeccceEEECCC
Confidence 4455555799999999998865333333456777889999999999997 56666543
No 24
>PRK14153 heat shock protein GrpE; Provisional
Probab=74.68 E-value=4.2 Score=40.86 Aligned_cols=56 Identities=23% Similarity=0.337 Sum_probs=40.1
Q ss_pred CceeEEecCCCccchhhhhhhccccccCCCCCeEEEEeeCCceeCCeEEE-eEEEeee
Q 007566 538 PLGILRVEDNRSFDAHYMEDMLMDRQKSHGSSRVKIMVMPGFYVQDKVLR-CKVLCRY 594 (598)
Q Consensus 538 ~asIFrV~rG~~Fs~vYMEsVv~~~~~~~~~~~VgftV~PGFkVg~tVIK-crVYLs~ 594 (598)
.+..+.+. |..|||.++|-|....+....+..|.=.+-+|++++++||+ ++|-++.
T Consensus 131 Gv~~I~~~-G~~FDP~~HEAv~~~~~~~~~~gtVi~V~qkGY~l~dRVLRPA~V~Vak 187 (194)
T PRK14153 131 GLERIECE-GEEFDPHRHEAMMHVETSEVPDNTIVDVCKPGYALNSKVIRPAMVSVAR 187 (194)
T ss_pred CCeeeCCC-CCCCChhHhceeeeeCCCCCCcCEEEEEeeCCcEeCCEEeeCcEEEECC
Confidence 34555554 99999999999854333233345777788999999999997 4565554
No 25
>PRK14162 heat shock protein GrpE; Provisional
Probab=73.51 E-value=4.5 Score=40.64 Aligned_cols=52 Identities=17% Similarity=0.294 Sum_probs=36.5
Q ss_pred eeEEecCCCccchhhhhhhccccc-cCCCCCeEEEEeeCCceeCCeEEEe-EEEe
Q 007566 540 GILRVEDNRSFDAHYMEDMLMDRQ-KSHGSSRVKIMVMPGFYVQDKVLRC-KVLC 592 (598)
Q Consensus 540 sIFrV~rG~~Fs~vYMEsVv~~~~-~~~~~~~VgftV~PGFkVg~tVIKc-rVYL 592 (598)
..+.. .|..|||.+.|-|..-.. ....+..|.=.+-+|+++|+.||+. +|-+
T Consensus 139 ~~I~~-~G~~FDP~~HEAv~~~~~~~~~~~gtVv~v~qkGY~l~dRVLRpA~V~V 192 (194)
T PRK14162 139 TEIKA-DGEKFDPTLHQAVQTVAAENDDQKDHVVQVLQKGYQYKDRTLRPAMVVV 192 (194)
T ss_pred EEeCC-CCCCCChhHhhhheeecCCCCCCcCEEEEEeeCCcEeCCEeeecceEEe
Confidence 33443 599999999999854322 1233456777889999999999984 4443
No 26
>PRK14139 heat shock protein GrpE; Provisional
Probab=73.17 E-value=4.4 Score=40.42 Aligned_cols=53 Identities=21% Similarity=0.285 Sum_probs=38.5
Q ss_pred ceeEEecCCCccchhhhhhhccccccCCCCCeEEEEeeCCceeCCeEEEe-EEEee
Q 007566 539 LGILRVEDNRSFDAHYMEDMLMDRQKSHGSSRVKIMVMPGFYVQDKVLRC-KVLCR 593 (598)
Q Consensus 539 asIFrV~rG~~Fs~vYMEsVv~~~~~~~~~~~VgftV~PGFkVg~tVIKc-rVYLs 593 (598)
+..+.. .|..|||.++|-|....+ ...+..|.=.+-+||++++.||+. +|-++
T Consensus 129 v~~I~~-~G~~FDP~~HEAv~~~~~-~~~~gtVi~V~qkGY~l~dRVLRPA~V~Va 182 (185)
T PRK14139 129 VVEINP-VGEKFDPHQHQAISMVPA-EQEPNTVVAVLQKGYTIADRVLRPALVTVA 182 (185)
T ss_pred CceeCC-CCCCCChHHhheeeeecC-CCCcCEEEEEeeCCcEeCCEeccCceEEeC
Confidence 344444 599999999999865333 233567888899999999999974 45443
No 27
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=72.47 E-value=27 Score=34.36 Aligned_cols=47 Identities=26% Similarity=0.290 Sum_probs=29.0
Q ss_pred HHHHHHHhhhhhHH----HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 007566 281 RELMEANESRDAAL----MEVSEMRSSFGELRQKLEYLEAYCEELKKALRQ 327 (598)
Q Consensus 281 ~kL~~a~~~RDaa~----~Ei~~lk~sl~eL~~KL~~Le~~~~~Lkk~L~q 327 (598)
+.|..+++.+...+ +|+.-+...+..|+++++.|+..|.+|-+++=+
T Consensus 133 ~~l~~~l~ek~k~~e~l~DE~~~L~l~~~~~e~k~~~l~~En~~Lv~Rwm~ 183 (194)
T PF08614_consen 133 KDLEEELKEKNKANEILQDELQALQLQLNMLEEKLRKLEEENRELVERWMQ 183 (194)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555544 366666666777777777777777777666543
No 28
>PHA03162 hypothetical protein; Provisional
Probab=71.84 E-value=26 Score=33.68 Aligned_cols=26 Identities=19% Similarity=0.373 Sum_probs=23.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007566 303 SFGELRQKLEYLEAYCEELKKALRQA 328 (598)
Q Consensus 303 sl~eL~~KL~~Le~~~~~Lkk~L~q~ 328 (598)
++++|..+|..|+.+|..||++|++-
T Consensus 14 tmEeLaaeL~kLqmENK~LKkkl~~~ 39 (135)
T PHA03162 14 TMEDLAAEIAKLQLENKALKKKIKEG 39 (135)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 46689999999999999999999876
No 29
>PRK14157 heat shock protein GrpE; Provisional
Probab=71.55 E-value=4.1 Score=41.92 Aligned_cols=48 Identities=21% Similarity=0.427 Sum_probs=36.7
Q ss_pred CCCccchhhhhhhccccccCCCCCeEEEEeeCCceeCCeEEE-eEEEee
Q 007566 546 DNRSFDAHYMEDMLMDRQKSHGSSRVKIMVMPGFYVQDKVLR-CKVLCR 593 (598)
Q Consensus 546 rG~~Fs~vYMEsVv~~~~~~~~~~~VgftV~PGFkVg~tVIK-crVYLs 593 (598)
.|..|||.+-|-|....+....+..|.=.+-+|++++++||+ ++|-++
T Consensus 175 ~Ge~FDP~~HEAV~~~~~~~~~~gtVi~V~QkGY~l~dRVLRPA~V~Va 223 (227)
T PRK14157 175 KGEDFDPTKHDAILHKPDPDAEKETVDTVVEAGYRIGDRVIRAARVVVA 223 (227)
T ss_pred CCCCCChhhhceeeeecCCCCCcCEEEEEeeCCceeCCEeccCceEEeC
Confidence 599999999999865333333456788889999999999998 455544
No 30
>KOG4603 consensus TBP-1 interacting protein [Signal transduction mechanisms]
Probab=70.42 E-value=26 Score=35.27 Aligned_cols=64 Identities=17% Similarity=0.253 Sum_probs=49.5
Q ss_pred hHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007566 262 EEVSQVFKDLGILSIETLKRELMEANESRDAALMEVSEMRSSFGELRQKLEYLEAYCEELKKALRQA 328 (598)
Q Consensus 262 eE~q~llkt~~i~sie~L~~kL~~a~~~RDaa~~Ei~~lk~sl~eL~~KL~~Le~~~~~Lkk~L~q~ 328 (598)
+|.++| +-+|+.+.+-++.|+...+-=|+++-|.+ -..++.++++++++|.-.|.+..++|.--
T Consensus 79 eel~~l--d~~i~~l~ek~q~l~~t~s~veaEik~L~-s~Lt~eemQe~i~~L~kev~~~~erl~~~ 142 (201)
T KOG4603|consen 79 EELQVL--DGKIVALTEKVQSLQQTCSYVEAEIKELS-SALTTEEMQEEIQELKKEVAGYRERLKNI 142 (201)
T ss_pred HHHHHH--hHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhcChHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555555 67888888888999988887777544433 23567899999999999999999998754
No 31
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=70.10 E-value=20 Score=41.73 Aligned_cols=33 Identities=24% Similarity=0.327 Sum_probs=22.0
Q ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007566 296 EVSEMRSSFGELRQKLEYLEAYCEELKKALRQA 328 (598)
Q Consensus 296 Ei~~lk~sl~eL~~KL~~Le~~~~~Lkk~L~q~ 328 (598)
||..+...+..|+.+|.+-....+.|+++|.+.
T Consensus 475 ei~~~~~~I~~L~~~L~e~~~~ve~L~~~l~~l 507 (652)
T COG2433 475 EIRARDRRIERLEKELEEKKKRVEELERKLAEL 507 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555566666666677776666777777777665
No 32
>PF05812 Herpes_BLRF2: Herpesvirus BLRF2 protein; InterPro: IPR008642 This family consists of several herpes virus BLRF2 tegument proteins.; PDB: 2OA5_B 2H3R_D.
Probab=69.81 E-value=6.6 Score=36.94 Aligned_cols=26 Identities=38% Similarity=0.489 Sum_probs=23.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007566 303 SFGELRQKLEYLEAYCEELKKALRQA 328 (598)
Q Consensus 303 sl~eL~~KL~~Le~~~~~Lkk~L~q~ 328 (598)
++++|..+|..|+.+|..||++|++.
T Consensus 4 t~EeLaaeL~kLqmENk~LKkkl~~~ 29 (118)
T PF05812_consen 4 TMEELAAELQKLQMENKALKKKLRQS 29 (118)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 46689999999999999999999876
No 33
>PRK14143 heat shock protein GrpE; Provisional
Probab=68.94 E-value=5.5 Score=41.16 Aligned_cols=55 Identities=24% Similarity=0.343 Sum_probs=39.0
Q ss_pred ceeEEecCCCccchhhhhhhccccccCCCCCeEEEEeeCCceeCCeEEE-eEEEeee
Q 007566 539 LGILRVEDNRSFDAHYMEDMLMDRQKSHGSSRVKIMVMPGFYVQDKVLR-CKVLCRY 594 (598)
Q Consensus 539 asIFrV~rG~~Fs~vYMEsVv~~~~~~~~~~~VgftV~PGFkVg~tVIK-crVYLs~ 594 (598)
+..+.+ .|..|||.+.|-|.........+..|.=.+-+||+++++||+ ++|-++.
T Consensus 167 V~~i~~-~G~~FDP~~HEAv~~~~~~~~~~gtVv~v~qkGY~l~~RVLRpA~V~Vsk 222 (238)
T PRK14143 167 VSPMRV-VGQEFDPNLHEAVLREPSDEHPEDVVLEELQRGYHLGGRVLRHAMVKVSM 222 (238)
T ss_pred CeeeCC-CCCCCChHHhheeeeecCCCCCcCeEEEEeeCCceeCCEecccceEEECC
Confidence 344443 599999999999854333233345677789999999999998 4565554
No 34
>PRK14159 heat shock protein GrpE; Provisional
Probab=68.00 E-value=8.8 Score=38.05 Aligned_cols=41 Identities=27% Similarity=0.469 Sum_probs=32.0
Q ss_pred CCccchhhhhhhccccccCCCCCeEEEEeeCCceeCCeEEEe
Q 007566 547 NRSFDAHYMEDMLMDRQKSHGSSRVKIMVMPGFYVQDKVLRC 588 (598)
Q Consensus 547 G~~Fs~vYMEsVv~~~~~~~~~~~VgftV~PGFkVg~tVIKc 588 (598)
| .|||.+.|-|..-.+....+..|.-.+-+|++++++||+.
T Consensus 129 G-~FDP~~HEAv~~~~~~~~~~gtVv~v~qkGY~l~dRVLRp 169 (176)
T PRK14159 129 K-EFDPNLHEAMFHVDSENHQSGEVVQVLQKGYKIADRVIRP 169 (176)
T ss_pred C-CCChHHhhhhheeCCCCCCcCeEEEEeeCCcEeCCEeeec
Confidence 6 6999999998653333334567888899999999999984
No 35
>PF15456 Uds1: Up-regulated During Septation
Probab=67.78 E-value=41 Score=31.73 Aligned_cols=65 Identities=32% Similarity=0.377 Sum_probs=44.1
Q ss_pred chhHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhHHHHHHHHHh-------------hHHHHHHHHHHHHHHHHHHHHHHH
Q 007566 260 ESEEVSQVFKDLGILSIETLKRELMEANESRDAALMEVSEMRS-------------SFGELRQKLEYLEAYCEELKKALR 326 (598)
Q Consensus 260 e~eE~q~llkt~~i~sie~L~~kL~~a~~~RDaa~~Ei~~lk~-------------sl~eL~~KL~~Le~~~~~Lkk~L~ 326 (598)
|.++..+=++.+.. -++.+.++|.-+..-||++ .+-++. ++..=+++|..++++|++|...|.
T Consensus 23 EVe~LKkEl~~L~~-R~~~lr~kl~le~k~RdAa---~sl~~l~~~~~~~~~~~~~~~~~~eeel~~~~rk~ee~~~eL~ 98 (124)
T PF15456_consen 23 EVEELKKELRSLDS-RLEYLRRKLALESKIRDAA---HSLSRLYSSSSRRARFSRESSLKAEEELAESDRKCEELAQELW 98 (124)
T ss_pred HHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHH---HHHHHhcCCCccccCCCcchHHHHHHHHHHHHhhHHHHHHHHH
Confidence 45555555666666 6788999999999999987 343333 455556667777777777776666
Q ss_pred HH
Q 007566 327 QA 328 (598)
Q Consensus 327 q~ 328 (598)
..
T Consensus 99 ~l 100 (124)
T PF15456_consen 99 KL 100 (124)
T ss_pred HH
Confidence 54
No 36
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=66.94 E-value=54 Score=38.49 Aligned_cols=42 Identities=29% Similarity=0.423 Sum_probs=25.9
Q ss_pred HhhhhhHHH-HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007566 287 NESRDAALM-EVSEMRSSFGELRQKLEYLEAYCEELKKALRQA 328 (598)
Q Consensus 287 ~~~RDaa~~-Ei~~lk~sl~eL~~KL~~Le~~~~~Lkk~L~q~ 328 (598)
+++++..++ |++.|+..+.+|+++++.|+.+|..+++.++..
T Consensus 427 ~~~~ve~l~~e~~~L~~~~ee~k~eie~L~~~l~~~~r~~~~~ 469 (652)
T COG2433 427 LEETVERLEEENSELKRELEELKREIEKLESELERFRREVRDK 469 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444443 566666666677777777777777777666644
No 37
>PHA03155 hypothetical protein; Provisional
Probab=66.49 E-value=6.9 Score=36.64 Aligned_cols=26 Identities=35% Similarity=0.372 Sum_probs=23.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007566 303 SFGELRQKLEYLEAYCEELKKALRQA 328 (598)
Q Consensus 303 sl~eL~~KL~~Le~~~~~Lkk~L~q~ 328 (598)
++++|..+|..|+.+|..||++|++-
T Consensus 9 tvEeLaaeL~kL~~ENK~LKkkl~~~ 34 (115)
T PHA03155 9 DVEELEKELQKLKIENKALKKKLLQH 34 (115)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 35688999999999999999999875
No 38
>PF04880 NUDE_C: NUDE protein, C-terminal conserved region; InterPro: IPR006964 This domain represents the C-terminal conserved region of NUDE proteins. Emericella nidulans (Aspergillus nidulans) NUDE, acts in the cytoplasmic dynein/dynactin pathway and is required for distribution of nuclei []. It is a homologue of the nuclear distribution protein RO11 of Neurospora crassa. NUDE interacts with the NUDF via an N-terminal coiled coil domain; this is the only domain which is absolutely required for NUDE function.; PDB: 2V66_B 2V71_B.
Probab=66.47 E-value=7.8 Score=38.23 Aligned_cols=43 Identities=23% Similarity=0.318 Sum_probs=11.4
Q ss_pred HHHHHHHHHHHHhhhh---hHHHHHHHHHhhHHHHHHHHHHHHHHH
Q 007566 276 IETLKRELMEANESRD---AALMEVSEMRSSFGELRQKLEYLEAYC 318 (598)
Q Consensus 276 ie~L~~kL~~a~~~RD---aa~~Ei~~lk~sl~eL~~KL~~Le~~~ 318 (598)
+|++..||-.|++... .+|+|-+.|+.++-.|+.+|++|.++.
T Consensus 2 LeD~EsklN~AIERnalLE~ELdEKE~L~~~~QRLkDE~RDLKqEl 47 (166)
T PF04880_consen 2 LEDFESKLNQAIERNALLESELDEKENLREEVQRLKDELRDLKQEL 47 (166)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCH--------------
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444443331 222333334444445555555555444
No 39
>KOG3119 consensus Basic region leucine zipper transcription factor [Transcription]
Probab=65.56 E-value=51 Score=34.49 Aligned_cols=53 Identities=30% Similarity=0.310 Sum_probs=40.0
Q ss_pred HHHHHHHHHHHHhhhhhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007566 276 IETLKRELMEANESRDAALMEVSEMRSSFGELRQKLEYLEAYCEELKKALRQA 328 (598)
Q Consensus 276 ie~L~~kL~~a~~~RDaa~~Ei~~lk~sl~eL~~KL~~Le~~~~~Lkk~L~q~ 328 (598)
.+..++.-+++-+.||.+-+...+|+.-+.+|+++.+.|..++..|++.|..+
T Consensus 196 ~err~rNN~A~~kSR~~~k~~~~e~~~r~~~leken~~lr~~v~~l~~el~~~ 248 (269)
T KOG3119|consen 196 KERRRRNNEAVRKSRDKRKQKEDEMAHRVAELEKENEALRTQVEQLKKELATL 248 (269)
T ss_pred HHHHHhhhHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34577888888888888876656677777777777777777777777777766
No 40
>PRK11448 hsdR type I restriction enzyme EcoKI subunit R; Provisional
Probab=65.55 E-value=35 Score=42.41 Aligned_cols=14 Identities=14% Similarity=0.242 Sum_probs=11.1
Q ss_pred HH-HHHHhcCCCHHH
Q 007566 389 LV-AQIEETDHTLMD 402 (598)
Q Consensus 389 LI-~~Mr~AgwDL~a 402 (598)
+| .+++.|||+++.
T Consensus 239 ~Id~~L~~aGW~~~~ 253 (1123)
T PRK11448 239 LIDQQLRKAGWEADS 253 (1123)
T ss_pred HHHHHHHHCCCCCCC
Confidence 45 567999999876
No 41
>PRK10884 SH3 domain-containing protein; Provisional
Probab=65.25 E-value=31 Score=34.90 Aligned_cols=9 Identities=33% Similarity=0.770 Sum_probs=5.0
Q ss_pred cccccCCCC
Q 007566 165 TVLQTSPGT 173 (598)
Q Consensus 165 ~~l~~~~~~ 173 (598)
+.+++.||.
T Consensus 34 v~lRsGPg~ 42 (206)
T PRK10884 34 TYVRSGPGD 42 (206)
T ss_pred EEEEcCCCC
Confidence 355555655
No 42
>PRK14146 heat shock protein GrpE; Provisional
Probab=64.98 E-value=6.9 Score=39.87 Aligned_cols=48 Identities=21% Similarity=0.322 Sum_probs=35.8
Q ss_pred CCCccchhhhhhhccccccCCCCCeEEEEeeCCceeCC----eEEE-eEEEee
Q 007566 546 DNRSFDAHYMEDMLMDRQKSHGSSRVKIMVMPGFYVQD----KVLR-CKVLCR 593 (598)
Q Consensus 546 rG~~Fs~vYMEsVv~~~~~~~~~~~VgftV~PGFkVg~----tVIK-crVYLs 593 (598)
.|..|||.++|-|.........+..|.-.+-+|+++++ .||+ ++|-++
T Consensus 159 ~G~~FDP~~HeAv~~~~~~~~~~g~Vv~v~qkGY~l~~r~~~RvLRpA~V~Va 211 (215)
T PRK14146 159 KGEPFDPMSMEALSSEEGDQYSEETVIDVYQAGYYYKENEDKFTLRPARVRIG 211 (215)
T ss_pred CCCCCChhHhceeeeecCCCCCcCEEEEEeeCCeEeCCccCCeeccCceEEeC
Confidence 59999999999986543333345667788899999998 5886 456554
No 43
>PF07795 DUF1635: Protein of unknown function (DUF1635); InterPro: IPR012862 The members of this family include sequences that are parts of hypothetical proteins expressed by plant species. The region in question is about 170 amino acids long.
Probab=63.64 E-value=29 Score=35.75 Aligned_cols=57 Identities=23% Similarity=0.242 Sum_probs=27.7
Q ss_pred hhHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007566 261 SEEVSQVFKDLGILSIETLKRELMEANESRDAALMEVSEMRSSFGELRQKLEYLEAYCEELKKALRQA 328 (598)
Q Consensus 261 ~eE~q~llkt~~i~sie~L~~kL~~a~~~RDaa~~Ei~~lk~sl~eL~~KL~~Le~~~~~Lkk~L~q~ 328 (598)
+||+.|-| -|-.+=+|.++.+-.+++|+|+. .+..|..=|...-++.++.+.++..-
T Consensus 3 ~EELRq~L-l~TTlELE~~k~~A~EElRk~ee----------qi~~L~~Ll~~a~~ERDEAr~qlq~L 59 (214)
T PF07795_consen 3 MEELRQKL-LYTTLELEATKMEANEELRKREE----------QIAHLKDLLKKAYQERDEAREQLQKL 59 (214)
T ss_pred HHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555444 23332334444445555555555 44455555555555555555555443
No 44
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=63.25 E-value=54 Score=33.78 Aligned_cols=52 Identities=29% Similarity=0.419 Sum_probs=39.6
Q ss_pred HHHHHHHHHHHhhhhhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007566 277 ETLKRELMEANESRDAALMEVSEMRSSFGELRQKLEYLEAYCEELKKALRQA 328 (598)
Q Consensus 277 e~L~~kL~~a~~~RDaa~~Ei~~lk~sl~eL~~KL~~Le~~~~~Lkk~L~q~ 328 (598)
+++..........-.++-+|+.++|..+..|+.+|+.|+..+..|+++|.+.
T Consensus 198 ~~l~~~~~~~~~~~~~~~~E~~~~r~~~~~l~~el~~l~~~~~~Le~~l~~l 249 (312)
T PF00038_consen 198 EELRQQSEKSSEELESAKEELKELRRQIQSLQAELESLRAKNASLERQLREL 249 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccccccccccccchhHhHHHHHHhhhhHhhhhhhccccchhhhhhhHHHH
Confidence 3344444444444444446899999999999999999999999999999876
No 45
>PRK10884 SH3 domain-containing protein; Provisional
Probab=62.85 E-value=29 Score=35.16 Aligned_cols=28 Identities=18% Similarity=0.189 Sum_probs=12.2
Q ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 007566 300 MRSSFGELRQKLEYLEAYCEELKKALRQ 327 (598)
Q Consensus 300 lk~sl~eL~~KL~~Le~~~~~Lkk~L~q 327 (598)
|+..++++++.+.+|+..|++|+++|..
T Consensus 123 l~~~~~~~~~~~~~L~~~n~~L~~~l~~ 150 (206)
T PRK10884 123 MQQKVAQSDSVINGLKEENQKLKNQLIV 150 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444444443
No 46
>PRK11637 AmiB activator; Provisional
Probab=62.82 E-value=47 Score=36.30 Aligned_cols=33 Identities=15% Similarity=0.251 Sum_probs=15.9
Q ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007566 296 EVSEMRSSFGELRQKLEYLEAYCEELKKALRQA 328 (598)
Q Consensus 296 Ei~~lk~sl~eL~~KL~~Le~~~~~Lkk~L~q~ 328 (598)
||..+...|..|+++|..++.....+++.|+++
T Consensus 97 ~i~~~~~ei~~l~~eI~~~q~~l~~~~~~l~~r 129 (428)
T PRK11637 97 TLNQLNKQIDELNASIAKLEQQQAAQERLLAAQ 129 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444455555544444444444444
No 47
>PRK14163 heat shock protein GrpE; Provisional
Probab=62.41 E-value=7.8 Score=39.63 Aligned_cols=49 Identities=14% Similarity=0.364 Sum_probs=36.8
Q ss_pred CCCccchhhhhhhccccccCCCCCeEEEEeeCCceeCCeEEE-eEEEeee
Q 007566 546 DNRSFDAHYMEDMLMDRQKSHGSSRVKIMVMPGFYVQDKVLR-CKVLCRY 594 (598)
Q Consensus 546 rG~~Fs~vYMEsVv~~~~~~~~~~~VgftV~PGFkVg~tVIK-crVYLs~ 594 (598)
.|..|||.+.|-|.........+..|.=.+-+|++++++||+ ++|-++.
T Consensus 138 ~G~~FDP~~HEAv~~~~~~~~~~gtVv~v~qkGY~l~~RVLRPA~V~Vsk 187 (214)
T PRK14163 138 EGEPFDPTIHEALMHSYAPDVTETTCVAILQPGYRIGERTIRPARVAVAE 187 (214)
T ss_pred CCCCCChhHhceeeeecCCCCCcCEEEEEeeCCcCcCCEeccCceEEECC
Confidence 699999999999854333333356777889999999999998 4555543
No 48
>PHA01750 hypothetical protein
Probab=62.29 E-value=48 Score=28.80 Aligned_cols=31 Identities=29% Similarity=0.488 Sum_probs=16.9
Q ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Q 007566 296 EVSEMRSSFGELRQKLEYLEAYCEELKKALR 326 (598)
Q Consensus 296 Ei~~lk~sl~eL~~KL~~Le~~~~~Lkk~L~ 326 (598)
|..-|+-.+.++..+.+.+++...+++++++
T Consensus 43 ELdNL~~ei~~~kikqDnl~~qv~eik~k~d 73 (75)
T PHA01750 43 ELDNLKTEIEELKIKQDELSRQVEEIKRKLD 73 (75)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHhhc
Confidence 4444455555555555555555555555553
No 49
>PRK14149 heat shock protein GrpE; Provisional
Probab=62.21 E-value=13 Score=37.40 Aligned_cols=46 Identities=15% Similarity=0.363 Sum_probs=33.7
Q ss_pred CCccchhhhhhhccccccCCCCCeEEEEeeCCceeCCeEEEe-EEEee
Q 007566 547 NRSFDAHYMEDMLMDRQKSHGSSRVKIMVMPGFYVQDKVLRC-KVLCR 593 (598)
Q Consensus 547 G~~Fs~vYMEsVv~~~~~~~~~~~VgftV~PGFkVg~tVIKc-rVYLs 593 (598)
| .|||.+.|-|....+....+..|.=.+-+|+++++.||+- +|-++
T Consensus 142 G-~FDP~~HEAv~~v~~~~~~~gtVv~V~QkGY~l~dRVLRPA~V~Va 188 (191)
T PRK14149 142 E-EFDPNFHNAIMQVKSEEKENGKIVQVLQQGYKYKGRVLRPAMVSIA 188 (191)
T ss_pred C-CCChHHhheeeeecCCCCCcCEEEEEeeCCcEeCCEEeeccEEEeC
Confidence 6 5999999988543333334567778899999999999984 45444
No 50
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=62.16 E-value=86 Score=38.05 Aligned_cols=52 Identities=27% Similarity=0.447 Sum_probs=43.5
Q ss_pred HHHHHHHHHhhhhhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 007566 279 LKRELMEANESRDAALMEVSEMRSSFGELRQKLEYLEAYCEELKKALRQAAT 330 (598)
Q Consensus 279 L~~kL~~a~~~RDaa~~Ei~~lk~sl~eL~~KL~~Le~~~~~Lkk~L~q~~~ 330 (598)
.+.+++.-+-.||-...||.++++.|.+++++|..|..+.+.|..+|++.+.
T Consensus 470 ~kt~ie~~~~q~e~~isei~qlqarikE~q~kl~~l~~Ekq~l~~qlkq~q~ 521 (1118)
T KOG1029|consen 470 QKTEIEEVTKQRELMISEIDQLQARIKELQEKLQKLAPEKQELNHQLKQKQS 521 (1118)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhh
Confidence 4455555566677777799999999999999999999999999999998853
No 51
>PF14817 HAUS5: HAUS augmin-like complex subunit 5
Probab=61.99 E-value=46 Score=39.06 Aligned_cols=83 Identities=23% Similarity=0.314 Sum_probs=59.2
Q ss_pred HHhhhhhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhccCcccchhhhccCCCCCCCccCCCCCCccCcccc
Q 007566 286 ANESRDAALMEVSEMRSSFGELRQKLEYLEAYCEELKKALRQAATHAKDSHQVNEKLGNFPRRGKSIDGNGESLMPVSEE 365 (598)
Q Consensus 286 a~~~RDaa~~Ei~~lk~sl~eL~~KL~~Le~~~~~Lkk~L~q~~~~~k~~~~h~ek~~~~~rs~~s~d~~g~~~~pvs~~ 365 (598)
+.++|+....||+|||+.|.+|+++|+..+.....-+..+.+.-....+.+ | ..
T Consensus 77 ~~~~r~~L~~everLraei~~l~~~I~~~e~e~~~~e~~~~q~~~~~~~~~-~-------------------------k~ 130 (632)
T PF14817_consen 77 EARRRRELEKEVERLRAEIQELDKEIESREREVSRQEASREQMLDKISDSR-H-------------------------KQ 130 (632)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-H-------------------------HH
Confidence 444666666689999999999999999999988887777766521111110 1 14
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007566 366 AMVEGFLQIVSEARLSVKQFCKTLVAQIE 394 (598)
Q Consensus 366 lt~e~Fl~~l~~ArkSIr~FaKlLI~~Mr 394 (598)
+.-+.|-+.+....+..+...|-|-.+.+
T Consensus 131 ~LL~Ay~q~c~~~~~~l~e~~~rl~~~~~ 159 (632)
T PF14817_consen 131 LLLEAYSQQCEEQRRILREYTKRLQGQVE 159 (632)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56778888888888888888887766554
No 52
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=61.32 E-value=26 Score=39.78 Aligned_cols=53 Identities=13% Similarity=0.280 Sum_probs=35.1
Q ss_pred HHhhhhhHHHHHHHHHHHHHhhhhhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007566 268 FKDLGILSIETLKRELMEANESRDAALMEVSEMRSSFGELRQKLEYLEAYCEELKKALRQA 328 (598)
Q Consensus 268 lkt~~i~sie~L~~kL~~a~~~RDaa~~Ei~~lk~sl~eL~~KL~~Le~~~~~Lkk~L~q~ 328 (598)
|.+... ..++|.++|++. | .|...|..-..++++||++++..+..|+.+++..
T Consensus 71 LteqQ~-kasELEKqLaaL---r----qElq~~saq~~dle~KIkeLEaE~~~Lk~Ql~a~ 123 (475)
T PRK13729 71 TTEMQV-TAAQMQKQYEEI---R----RELDVLNKQRGDDQRRIEKLGQDNAALAEQVKAL 123 (475)
T ss_pred HHHHHH-HHHHHHHHHHHH---H----HHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHhh
Confidence 334443 445566666643 1 1334444556688899999999999999999654
No 53
>KOG2070 consensus Guanine nucleotide exchange factor [Nucleotide transport and metabolism]
Probab=60.22 E-value=88 Score=36.20 Aligned_cols=54 Identities=19% Similarity=0.304 Sum_probs=38.0
Q ss_pred HHHHHHHHHHHHhhhhhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 007566 276 IETLKRELMEANESRDAALMEVSEMRSSFGELRQKLEYLEAYCEELKKALRQAA 329 (598)
Q Consensus 276 ie~L~~kL~~a~~~RDaa~~Ei~~lk~sl~eL~~KL~~Le~~~~~Lkk~L~q~~ 329 (598)
+++-.+-|+++++..+.-.+|=.-|--.+-.|+.++++|++.++++++.|++..
T Consensus 590 ~~e~eki~~ee~r~~~~~vleekslvdtvyalkd~v~~lqqd~~kmkk~leeEq 643 (661)
T KOG2070|consen 590 LPEEEKILMEETRSNGQSVLEEKSLVDTVYALKDEVSELQQDNKKMKKVLEEEQ 643 (661)
T ss_pred hhhHHHHHHHhcccccceeecccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444556677777776555433233445566788999999999999999998763
No 54
>TIGR02047 CadR-PbrR Cd(II)/Pb(II)-responsive transcriptional regulator. This model represents the cadmium(II) and/or lead(II) responsive transcriptional activator of the proteobacterial metal efflux system. This protein is a member of the MerR family of transcriptional activators (pfam00376) and contains a distinctive pattern of cysteine residues in its metal binding loop, Cys-X(6-9)-Cys, as well as a conserved and critical cysteine at the N-terminal end of the dimerization helix.
Probab=59.75 E-value=61 Score=29.90 Aligned_cols=73 Identities=14% Similarity=0.219 Sum_probs=44.3
Q ss_pred CCCCccchhHHHHH--HHhhhhhHHHHHHHHHHHHHhhhhhHHHHHH-HHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007566 254 NSPNRTESEEVSQV--FKDLGILSIETLKRELMEANESRDAALMEVS-EMRSSFGELRQKLEYLEAYCEELKKALRQA 328 (598)
Q Consensus 254 ~s~~~ae~eE~q~l--lkt~~i~sie~L~~kL~~a~~~RDaa~~Ei~-~lk~sl~eL~~KL~~Le~~~~~Lkk~L~q~ 328 (598)
.-.....++..+-+ ||+.|+ ++++++.=|.... .-+..+.++. -++..+.+|++++++|+.-...|+..+..|
T Consensus 37 R~Y~~~~l~~l~~I~~lr~lG~-sL~eI~~~l~~~~-~~~~~~~~~~~~l~~~~~~l~~~i~~L~~~~~~L~~~~~~~ 112 (127)
T TIGR02047 37 RVYTVGHVERLAFIRNCRTLDM-SLAEIRQLLRYQD-KPEKSCSDVNALLDEHISHVRARIIKLQALIEQLVDLRGRC 112 (127)
T ss_pred CcCCHHHHHHHHHHHHHHHcCC-CHHHHHHHHHhhh-CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 34455566666644 789998 8888776554221 1111112222 245667777778888777777777766655
No 55
>KOG4010 consensus Coiled-coil protein TPD52 [General function prediction only]
Probab=59.67 E-value=19 Score=36.60 Aligned_cols=26 Identities=35% Similarity=0.304 Sum_probs=23.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007566 303 SFGELRQKLEYLEAYCEELKKALRQA 328 (598)
Q Consensus 303 sl~eL~~KL~~Le~~~~~Lkk~L~q~ 328 (598)
.|..||+=|..-|.+|.+||++|.-.
T Consensus 59 EI~TLrqVLaAKerH~~ELKRKLGlt 84 (208)
T KOG4010|consen 59 EIVTLRQVLAAKERHAAELKRKLGLT 84 (208)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCcc
Confidence 36699999999999999999999765
No 56
>PF12808 Mto2_bdg: Micro-tubular organiser Mto1 C-term Mto2-binding region; InterPro: IPR024545 This domain occurs at the C terminus of microtubule organising proteins in both budding and fission fungi. In Schizosaccharomyces pombe it has been shown to interact with the Mto2p protein, an interaction which is critical for anchoring the cytokinetic actin ring to the medial region of the cell and for proper coordination of mitosis with cytokinesis [, ].
Probab=58.98 E-value=26 Score=28.74 Aligned_cols=44 Identities=27% Similarity=0.357 Sum_probs=31.4
Q ss_pred HHHHHHHHHHHHHhhhhhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007566 275 SIETLKRELMEANESRDAALMEVSEMRSSFGELRQKLEYLEAYCEELKKALRQA 328 (598)
Q Consensus 275 sie~L~~kL~~a~~~RDaa~~Ei~~lk~sl~eL~~KL~~Le~~~~~Lkk~L~q~ 328 (598)
=+++|.++|.++-+.|.-+-. ..++.|.+|+..|..|+.+|...
T Consensus 5 Rl~ELe~klkaerE~R~~d~~----------~a~~rl~~l~~EN~~Lr~eL~~~ 48 (52)
T PF12808_consen 5 RLEELERKLKAEREARSLDRS----------AARKRLSKLEGENRLLRAELERL 48 (52)
T ss_pred HHHHHHHHHHHhHHhccCCch----------hHHHHHHHHHHHHHHHHHHHHHH
Confidence 457788899888766553211 23378888899999999888754
No 57
>PRK10227 DNA-binding transcriptional regulator CueR; Provisional
Probab=57.73 E-value=60 Score=30.51 Aligned_cols=85 Identities=11% Similarity=0.147 Sum_probs=48.7
Q ss_pred ccccccccCCCCCCCCccchhHHHHH--HHhhhhhHHHHHHHHHHHHHhhhhhHHHHH-HHHHhhHHHHHHHHHHHHHHH
Q 007566 242 LFPRLKKKHKSENSPNRTESEEVSQV--FKDLGILSIETLKRELMEANESRDAALMEV-SEMRSSFGELRQKLEYLEAYC 318 (598)
Q Consensus 242 l~~~~~kk~~~~~s~~~ae~eE~q~l--lkt~~i~sie~L~~kL~~a~~~RDaa~~Ei-~~lk~sl~eL~~KL~~Le~~~ 318 (598)
|++...|..+.-.-.....++...-+ ||..|+ ++++++.=|.. ...-+....++ ..+...+.++++++++|+...
T Consensus 25 Ll~p~~r~~~gyR~Y~~~~l~~l~~I~~lr~~G~-sl~eI~~~l~~-~~~~~~~~~~~~~~l~~~~~~l~~~i~~L~~~~ 102 (135)
T PRK10227 25 LVTPPMRSENGYRTYTQQHLNELTLLRQARQVGF-NLEESGELVNL-FNDPQRHSADVKRRTLEKVAEIERHIEELQSMR 102 (135)
T ss_pred CCCCcccCCCCcccCCHHHHHHHHHHHHHHHCCC-CHHHHHHHHHh-hccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34333343333344445555555533 678887 88776654442 22111111121 224566778888888888888
Q ss_pred HHHHHHHHHH
Q 007566 319 EELKKALRQA 328 (598)
Q Consensus 319 ~~Lkk~L~q~ 328 (598)
..|+..+.++
T Consensus 103 ~~L~~~~~~~ 112 (135)
T PRK10227 103 DQLLALANAC 112 (135)
T ss_pred HHHHHHHHhc
Confidence 8888877776
No 58
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=57.57 E-value=52 Score=31.49 Aligned_cols=33 Identities=36% Similarity=0.483 Sum_probs=26.6
Q ss_pred HHHHHHhhH--HHHHHHHHHHHHHHHHHHHHHHHH
Q 007566 296 EVSEMRSSF--GELRQKLEYLEAYCEELKKALRQA 328 (598)
Q Consensus 296 Ei~~lk~sl--~eL~~KL~~Le~~~~~Lkk~L~q~ 328 (598)
|+..|.+++ .+|+.++..|+..|..|+.+|...
T Consensus 101 eL~~L~~~~t~~el~~~i~~l~~e~~~l~~kL~~l 135 (169)
T PF07106_consen 101 ELASLSSEPTNEELREEIEELEEEIEELEEKLEKL 135 (169)
T ss_pred HHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555555544 789999999999999999999865
No 59
>PRK00736 hypothetical protein; Provisional
Probab=56.40 E-value=57 Score=27.64 Aligned_cols=47 Identities=13% Similarity=0.172 Sum_probs=34.8
Q ss_pred HHHHHHHHHhhhhhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007566 279 LKRELMEANESRDAALMEVSEMRSSFGELRQKLEYLEAYCEELKKALRQA 328 (598)
Q Consensus 279 L~~kL~~a~~~RDaa~~Ei~~lk~sl~eL~~KL~~Le~~~~~Lkk~L~q~ 328 (598)
-..+|+..+..-+.. |.+|-..+.+..++|+.|+..+..|..+|++.
T Consensus 6 Ri~~LE~klafqe~t---ie~Ln~~v~~Qq~~i~~L~~ql~~L~~rl~~~ 52 (68)
T PRK00736 6 RLTELEIRVAEQEKT---IEELSDQLAEQWKTVEQMRKKLDALTERFLSL 52 (68)
T ss_pred HHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 335555555566665 45566778888899999999999999999876
No 60
>PF04977 DivIC: Septum formation initiator; InterPro: IPR007060 DivIC, from the spore-forming, Gram-positive bacterium Bacillus subtilis, is necessary for both vegetative and sporulation septum formation []. These proteins are mainly composed of an N-terminal coiled-coil. DivIB, DivIC and FtsL inter-depend on each other for stabilisation and localisation. The latter two form a heterodimer. DivIC is always centre cell but the other two associate with it during septation [].; GO: 0007049 cell cycle
Probab=56.02 E-value=30 Score=28.34 Aligned_cols=29 Identities=28% Similarity=0.460 Sum_probs=18.4
Q ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007566 300 MRSSFGELRQKLEYLEAYCEELKKALRQA 328 (598)
Q Consensus 300 lk~sl~eL~~KL~~Le~~~~~Lkk~L~q~ 328 (598)
++..+.+|+++++.++..+.+|++.++..
T Consensus 22 ~~~ei~~l~~~i~~l~~e~~~L~~ei~~l 50 (80)
T PF04977_consen 22 LNQEIAELQKEIEELKKENEELKEEIERL 50 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33445566677777777777777766654
No 61
>cd01109 HTH_YyaN Helix-Turn-Helix DNA binding domain of the MerR-like transcription regulators YyaN and YraB. Putative helix-turn-helix (HTH) MerR-like transcription regulators of Bacillus subtilis, YyaN and YraB, and related proteins; N-terminal domain. Based on sequence similarity, these proteins are predicted to function as transcription regulators that mediate responses to stress in eubacteria. They belong to the MerR superfamily of transcription regulators that promote transcription of various stress regulons by reconfiguring the operator sequence located between the -35 and -10 promoter elements. A typical MerR regulator is comprised of distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their N-terminal domains are homologous and contain a DNA-binding winged HTH motif, while the C-terminal domains are often dissimilar and bind specific coactivator molecules such as metal ions, drugs, and organic substrates.
Probab=55.58 E-value=90 Score=27.93 Aligned_cols=63 Identities=22% Similarity=0.264 Sum_probs=32.4
Q ss_pred CCccchhHHHHH--HHhhhhhHHHHHHHHHHHHHhhhhhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Q 007566 256 PNRTESEEVSQV--FKDLGILSIETLKRELMEANESRDAALMEVSEMRSSFGELRQKLEYLEAYCEELKKALR 326 (598)
Q Consensus 256 ~~~ae~eE~q~l--lkt~~i~sie~L~~kL~~a~~~RDaa~~Ei~~lk~sl~eL~~KL~~Le~~~~~Lkk~L~ 326 (598)
.....++..+.+ ||..|+ ++++++.-|... ...+..+.|. ...|+++++.++....+|+..+.
T Consensus 39 Y~~~~l~~l~~I~~lr~~G~-sL~eI~~~l~~~-~~~~~~~~~~------~~~l~~~~~~l~~~i~~l~~~~~ 103 (113)
T cd01109 39 FTEEDLEWLEFIKCLRNTGM-SIKDIKEYAELR-REGDSTIPER------LELLEEHREELEEQIAELQETLA 103 (113)
T ss_pred CCHHHHHHHHHHHHHHHcCC-CHHHHHHHHHHH-ccCCccHHHH------HHHHHHHHHHHHHHHHHHHHHHH
Confidence 344456666533 788897 998887666532 2222211121 22344555555555555555443
No 62
>PF10211 Ax_dynein_light: Axonemal dynein light chain; InterPro: IPR019347 Axonemal dynein light chain proteins play a dynamic role in flagellar and cilial motility. Eukaryotic cilia and flagella are complex organelles consisting of a core structure, the axoneme, which is composed of nine microtubule doublets forming a cylinder that surrounds a pair of central singlet microtubules. This ultra-structural arrangement seems to be one of the most stable micro-tubular assemblies known and is responsible for the flagellar and ciliary movement of a large number of organisms ranging from protozoan to mammals. This light chain interacts directly with the N-terminal half of the heavy chains [].
Probab=55.05 E-value=1.1e+02 Score=30.51 Aligned_cols=34 Identities=26% Similarity=0.445 Sum_probs=27.6
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007566 295 MEVSEMRSSFGELRQKLEYLEAYCEELKKALRQA 328 (598)
Q Consensus 295 ~Ei~~lk~sl~eL~~KL~~Le~~~~~Lkk~L~q~ 328 (598)
.+|.+|+..+.+|+.++.+++..++.++++..+.
T Consensus 127 ~~i~~L~~e~~~L~~~~~~l~~~~e~~ek~~~e~ 160 (189)
T PF10211_consen 127 EEIEELEEEKEELEKQVQELKNKCEQLEKREEEL 160 (189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4788888888888888888888888888877664
No 63
>PF04201 TPD52: Tumour protein D52 family; InterPro: IPR007327 The hD52 gene was originally identified through its elevated expression level in human breast carcinoma. Cloning of D52 homologues from other species has indicated that D52 may play roles in calcium-mediated signal transduction and cell proliferation. Two human homologues of hD52, hD53 and hD54, have also been identified, demonstrating the existence of a novel gene/protein family []. These proteins have an N-terminal coiled-coil that allows members to form homo- and heterodimers with each other [].
Probab=54.74 E-value=31 Score=34.15 Aligned_cols=25 Identities=40% Similarity=0.486 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 007566 304 FGELRQKLEYLEAYCEELKKALRQA 328 (598)
Q Consensus 304 l~eL~~KL~~Le~~~~~Lkk~L~q~ 328 (598)
|..|++=|...|.+|.+||++|.-.
T Consensus 45 I~TLrqvL~aKer~~~eLKrkLGit 69 (162)
T PF04201_consen 45 IQTLRQVLAAKERHCAELKRKLGIT 69 (162)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHCCc
Confidence 5589999999999999999998543
No 64
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=54.35 E-value=53 Score=34.89 Aligned_cols=12 Identities=8% Similarity=0.022 Sum_probs=7.3
Q ss_pred HhcCCCHHHHhh
Q 007566 394 EETDHTLMDNLN 405 (598)
Q Consensus 394 r~AgwDL~aAan 405 (598)
+..||.+.....
T Consensus 290 ~~~gw~~~~~~~ 301 (325)
T PF08317_consen 290 KLTGWKIVSISG 301 (325)
T ss_pred HHHCcEEEEEeC
Confidence 456998755443
No 65
>PF04102 SlyX: SlyX; InterPro: IPR007236 The SlyX protein has no known function. It is short, less than 80 amino acids, and its gene is found close to the slyD gene. The SlyX protein has a conserved PPH(Y/W) motif at its C terminus. The protein may be a coiled-coil structure.; PDB: 3EFG_A.
Probab=54.15 E-value=58 Score=27.40 Aligned_cols=46 Identities=17% Similarity=0.250 Sum_probs=32.2
Q ss_pred HHHHHHHHhhhhhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007566 280 KRELMEANESRDAALMEVSEMRSSFGELRQKLEYLEAYCEELKKALRQA 328 (598)
Q Consensus 280 ~~kL~~a~~~RDaa~~Ei~~lk~sl~eL~~KL~~Le~~~~~Lkk~L~q~ 328 (598)
.-+|+..+..-+.. |.+|-..+.+..++|+.|+..+..|..+|+..
T Consensus 6 i~~LE~~la~qe~~---ie~Ln~~v~~Qq~~I~~L~~~l~~L~~rl~~~ 51 (69)
T PF04102_consen 6 IEELEIKLAFQEDT---IEELNDVVTEQQRQIDRLQRQLRLLRERLREL 51 (69)
T ss_dssp HHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHT----
T ss_pred HHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 35566566677776 55566778888899999999999999998875
No 66
>PF04380 BMFP: Membrane fusogenic activity; InterPro: IPR007475 BMFP consists of two structural domains, a coiled-coil C-terminal domain via which the protein self-associates as a trimer, and an N-terminal domain disordered at neutral pH but adopting an amphipathic alpha-helical structure in the presence of phospholipid vesicles, high ionic strength, acidic pH or SDS. BMFP interacts with phospholipid vesicles though the predicted amphipathic alpha-helix induced in the N-terminal half of the protein and promotes aggregation and fusion of vesicles in vitro.
Probab=54.05 E-value=40 Score=29.16 Aligned_cols=30 Identities=30% Similarity=0.356 Sum_probs=24.1
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Q 007566 295 MEVSEMRSSFGELRQKLEYLEAYCEELKKA 324 (598)
Q Consensus 295 ~Ei~~lk~sl~eL~~KL~~Le~~~~~Lkk~ 324 (598)
+|...++.-|..++++|+.||++...|+++
T Consensus 50 EEFd~q~~~L~~~r~kl~~LEarl~~LE~~ 79 (79)
T PF04380_consen 50 EEFDAQKAVLARTREKLEALEARLAALEAQ 79 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 367777888888899999988888888753
No 67
>PRK00295 hypothetical protein; Provisional
Probab=53.94 E-value=66 Score=27.24 Aligned_cols=45 Identities=18% Similarity=0.210 Sum_probs=33.0
Q ss_pred HHHHHHHhhhhhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007566 281 RELMEANESRDAALMEVSEMRSSFGELRQKLEYLEAYCEELKKALRQA 328 (598)
Q Consensus 281 ~kL~~a~~~RDaa~~Ei~~lk~sl~eL~~KL~~Le~~~~~Lkk~L~q~ 328 (598)
-+|+..+..-+.. |.+|-..+.+..++|+.|+..+..|..+|+..
T Consensus 8 ~~LE~kla~qE~t---ie~Ln~~v~~Qq~~I~~L~~ql~~L~~rl~~~ 52 (68)
T PRK00295 8 TELESRQAFQDDT---IQALNDVLVEQQRVIERLQLQMAALIKRQEEM 52 (68)
T ss_pred HHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4455444455554 45566678888899999999999999999876
No 68
>PF01166 TSC22: TSC-22/dip/bun family; InterPro: IPR000580 Several eukaryotic proteins are evolutionary related and are thought to be involved in transcriptional regulation. These proteins are highly similar in a region of about 50 residues that include a conserved leucine-zipper domain most probably involved in homo- or hetero-dimerisation. Proteins containing this signature include: Vertebrate protein TSC-22 [], a transcriptional regulator which seems to act on C-type natriuretic peptide (CNP) promoter. Mammalian protein DIP (DSIP-immunoreactive peptide) [], a protein whose function is not yet known. Drosophila protein bunched [] (gene bun) (also known as shortsighted), a probable transcription factor required for peripheral nervous system morphogenesis, eye development and oogenesis. Caenorhabditis elegans hypothetical protein T18D3.7. ; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1DIP_B.
Probab=53.70 E-value=19 Score=30.36 Aligned_cols=29 Identities=28% Similarity=0.349 Sum_probs=23.7
Q ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Q 007566 296 EVSEMRSSFGELRQKLEYLEAYCEELKKA 324 (598)
Q Consensus 296 Ei~~lk~sl~eL~~KL~~Le~~~~~Lkk~ 324 (598)
|+.-||..|.+|..+...||.+|.-|+..
T Consensus 15 EVevLK~~I~eL~~~n~~Le~EN~~Lk~~ 43 (59)
T PF01166_consen 15 EVEVLKEQIAELEERNSQLEEENNLLKQN 43 (59)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 57778888889999999999998877653
No 69
>PRK11637 AmiB activator; Provisional
Probab=52.80 E-value=77 Score=34.66 Aligned_cols=33 Identities=15% Similarity=0.338 Sum_probs=17.2
Q ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007566 296 EVSEMRSSFGELRQKLEYLEAYCEELKKALRQA 328 (598)
Q Consensus 296 Ei~~lk~sl~eL~~KL~~Le~~~~~Lkk~L~q~ 328 (598)
+|..+...|..++++|+.++.....|+++|++.
T Consensus 90 ~i~~~~~~i~~~~~ei~~l~~eI~~~q~~l~~~ 122 (428)
T PRK11637 90 KLRETQNTLNQLNKQIDELNASIAKLEQQQAAQ 122 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444555555555555555555555555544
No 70
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=52.42 E-value=69 Score=31.50 Aligned_cols=51 Identities=20% Similarity=0.196 Sum_probs=38.7
Q ss_pred HHHHHHHHHhhhhhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 007566 279 LKRELMEANESRDAALMEVSEMRSSFGELRQKLEYLEAYCEELKKALRQAATHA 332 (598)
Q Consensus 279 L~~kL~~a~~~RDaa~~Ei~~lk~sl~eL~~KL~~Le~~~~~Lkk~L~q~~~~~ 332 (598)
....|+..+..++. |+.+....+..|..++..|+..+.-|+++++....+|
T Consensus 124 ~~~~L~~~~~~l~~---~l~ek~k~~e~l~DE~~~L~l~~~~~e~k~~~l~~En 174 (194)
T PF08614_consen 124 ELAQLEEKIKDLEE---ELKEKNKANEILQDELQALQLQLNMLEEKLRKLEEEN 174 (194)
T ss_dssp HHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33455555556666 5777888899999999999999999999998875443
No 71
>TIGR02044 CueR Cu(I)-responsive transcriptional regulator. This model represents the copper-, silver- and gold- (I) responsive transcriptional activator of the gamma proteobacterial copper efflux system. This protein is a member of the MerR family of transcriptional activators (pfam00376) and contains a distinctive pattern of cysteine residues in its metal binding loop, Cys-X7-Cys. This family also lacks a conserved cysteine at the N-terminal end of the dimerization helix which is required for the binding of divalent metals such as zinc; here it is replaced by a serine residue.
Probab=51.93 E-value=87 Score=28.71 Aligned_cols=73 Identities=15% Similarity=0.242 Sum_probs=42.8
Q ss_pred CCCCccchhHHHHH--HHhhhhhHHHHHHHHHHHHHhhhhhHHHHH-HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007566 254 NSPNRTESEEVSQV--FKDLGILSIETLKRELMEANESRDAALMEV-SEMRSSFGELRQKLEYLEAYCEELKKALRQA 328 (598)
Q Consensus 254 ~s~~~ae~eE~q~l--lkt~~i~sie~L~~kL~~a~~~RDaa~~Ei-~~lk~sl~eL~~KL~~Le~~~~~Lkk~L~q~ 328 (598)
.-.....++..+.+ +|..|+ ++++++.=|.. ....+..+.++ ..+...+.+|++++++|+.-...|+..+..+
T Consensus 37 R~Y~~~~l~~l~~I~~lr~~G~-sL~eI~~~l~~-~~~~~~~~~~~~~~l~~~~~~l~~~i~~L~~~~~~L~~~~~~~ 112 (127)
T TIGR02044 37 RTYTQQHLDELRLISRARQVGF-SLEECKELLNL-WNDPNRTSADVKARTLEKVAEIERKISELQSMRDQLEALAQAC 112 (127)
T ss_pred eecCHHHHHHHHHHHHHHHCCC-CHHHHHHHHHh-hccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 34444556666644 788898 88887765542 22212111121 2244556677777777777777777776655
No 72
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=51.60 E-value=75 Score=32.34 Aligned_cols=33 Identities=27% Similarity=0.540 Sum_probs=25.8
Q ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007566 296 EVSEMRSSFGELRQKLEYLEAYCEELKKALRQA 328 (598)
Q Consensus 296 Ei~~lk~sl~eL~~KL~~Le~~~~~Lkk~L~q~ 328 (598)
|..+|...+..|.++++.|+.||..|++.+..-
T Consensus 50 e~~~L~~e~~~l~~e~e~L~~~~~~l~~~v~~q 82 (251)
T PF11932_consen 50 EKQELLAEYRQLEREIENLEVYNEQLERQVASQ 82 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566677778888888888888888888877654
No 73
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=51.39 E-value=42 Score=33.36 Aligned_cols=77 Identities=30% Similarity=0.453 Sum_probs=47.0
Q ss_pred CccccccccccccCCCCCCCCccchhHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhHHHHHHHHHhhHHHHHHHHHHHHH
Q 007566 237 GVLSWLFPRLKKKHKSENSPNRTESEEVSQVFKDLGILSIETLKRELMEANESRDAALMEVSEMRSSFGELRQKLEYLEA 316 (598)
Q Consensus 237 ~~~~~l~~~~~kk~~~~~s~~~ae~eE~q~llkt~~i~sie~L~~kL~~a~~~RDaa~~Ei~~lk~sl~eL~~KL~~Le~ 316 (598)
+.+=|-||+-..+. ....+++.++-+....- .+++|..+|+.+...|... .|=. .|-++|+.|+.
T Consensus 53 sn~YWsFps~~~~~------~~~~~~~l~~~~~~~~~-~i~~l~~~i~~~~~~r~~~-~eR~-------~~l~~l~~l~~ 117 (188)
T PF03962_consen 53 SNYYWSFPSQAKQK------RQNKLEKLQKEIEELEK-KIEELEEKIEEAKKGREES-EERE-------ELLEELEELKK 117 (188)
T ss_pred eeEEEecChHHHHH------HHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHhccccc-HHHH-------HHHHHHHHHHH
Confidence 36778888766654 22245555555555555 5677888888876666553 2211 34456667777
Q ss_pred HHHHHHHHHHHH
Q 007566 317 YCEELKKALRQA 328 (598)
Q Consensus 317 ~~~~Lkk~L~q~ 328 (598)
.+..|++.|...
T Consensus 118 ~~~~l~~el~~~ 129 (188)
T PF03962_consen 118 ELKELKKELEKY 129 (188)
T ss_pred HHHHHHHHHHHH
Confidence 777777777643
No 74
>cd01106 HTH_TipAL-Mta Helix-Turn-Helix DNA binding domain of the transcription regulators TipAL, Mta, and SkgA. Helix-turn-helix (HTH) TipAL, Mta, and SkgA transcription regulators, and related proteins, N-terminal domain. TipAL regulates resistance to and activation by numerous cyclic thiopeptide antibiotics, such as thiostrepton. Mta is a global transcriptional regulator; the N-terminal DNA-binding domain of Mta interacts directly with the promoters of mta, bmr, blt, and ydfK, and induces transcription of these multidrug-efflux transport genes. SkgA has been shown to control stationary-phase expression of catalase-peroxidase in Caulobacter crescentus. These proteins are comprised of distinct domains that harbor an N-terminal active (DNA-binding) site and a regulatory (effector-binding) site. The conserved N-terminal domain of these transcription regulators contains winged HTH motifs that mediate DNA binding. These proteins share the N-terminal DNA binding domain with other transcrip
Probab=51.22 E-value=51 Score=29.02 Aligned_cols=62 Identities=23% Similarity=0.366 Sum_probs=33.3
Q ss_pred CCCccchhHHHHH--HHhhhhhHHHHHHHHHHHHHhhhhhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Q 007566 255 SPNRTESEEVSQV--FKDLGILSIETLKRELMEANESRDAALMEVSEMRSSFGELRQKLEYLEAYCEELKK 323 (598)
Q Consensus 255 s~~~ae~eE~q~l--lkt~~i~sie~L~~kL~~a~~~RDaa~~Ei~~lk~sl~eL~~KL~~Le~~~~~Lkk 323 (598)
-....+++..+.+ |+..|+ +++++++=+. ..+.+. ...++..+.+|++++++|+.-...|.+
T Consensus 38 ~y~~~di~~l~~i~~lr~~g~-~l~~i~~~~~----~~~~~~--~~~l~~~~~~l~~~i~~l~~~~~~l~~ 101 (103)
T cd01106 38 LYTEEDLERLQQILFLKELGF-SLKEIKELLK----DPSEDL--LEALREQKELLEEKKERLDKLIKTIDR 101 (103)
T ss_pred eeCHHHHHHHHHHHHHHHcCC-CHHHHHHHHH----cCcHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455566666644 788887 8877666554 232221 222444455555555555544444443
No 75
>PF11544 Spc42p: Spindle pole body component Spc42p; InterPro: IPR021611 Spc42p is a 42kDa component of the S.cerevisiae spindle body that localises to the electron dense central region of the SPB. Spc42p is a phosphoprotein which forms a polymeric layer at the periphery of the SPB central plaque. This functions during SPB duplication and also facilitates the attachment of the SPB to the nuclear membrane. ; PDB: 2Q6Q_B.
Probab=50.17 E-value=77 Score=28.01 Aligned_cols=44 Identities=23% Similarity=0.308 Sum_probs=34.2
Q ss_pred HHHHHHhhhhhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007566 282 ELMEANESRDAALMEVSEMRSSFGELRQKLEYLEAYCEELKKALRQA 328 (598)
Q Consensus 282 kL~~a~~~RDaa~~Ei~~lk~sl~eL~~KL~~Le~~~~~Lkk~L~q~ 328 (598)
+|...+..|+. ||.+++.=++.|+.||.....-+..|+..+...
T Consensus 9 ~L~~kL~~K~e---EI~rLn~lv~sLR~KLiKYt~LnkkLq~~~~~~ 52 (76)
T PF11544_consen 9 ELKKKLNDKQE---EIDRLNILVGSLRGKLIKYTELNKKLQDQLLNL 52 (76)
T ss_dssp HHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444447777 699999999999999999888888887776654
No 76
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=49.79 E-value=66 Score=33.39 Aligned_cols=43 Identities=7% Similarity=0.089 Sum_probs=35.3
Q ss_pred HHhhhhhHHH-HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007566 286 ANESRDAALM-EVSEMRSSFGELRQKLEYLEAYCEELKKALRQA 328 (598)
Q Consensus 286 a~~~RDaa~~-Ei~~lk~sl~eL~~KL~~Le~~~~~Lkk~L~q~ 328 (598)
++..+-..++ ||.+||..++++.-+|+.+..+-.+|--.|+.+
T Consensus 58 ~l~~ql~~lq~ev~~LrG~~E~~~~~l~~~~~rq~~~y~dld~r 101 (263)
T PRK10803 58 QLQQQLSDNQSDIDSLRGQIQENQYQLNQVVERQKQIYLQIDSL 101 (263)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444553 899999999999999999999999998888887
No 77
>cd04770 HTH_HMRTR Helix-Turn-Helix DNA binding domain of Heavy Metal Resistance transcription regulators. Helix-turn-helix (HTH) heavy metal resistance transcription regulators (HMRTR): MerR1 (mercury), CueR (copper), CadR (cadmium), PbrR (lead), ZntR (zinc), and other related proteins. These transcription regulators mediate responses to heavy metal stress in eubacteria. They belong to the MerR superfamily of transcription regulators that promote transcription of various stress regulons by reconfiguring the operator sequence located between the -35 and -10 promoter elements. A typical MerR regulator is comprised of two distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their N-terminal domains are homologous and contain a DNA-binding winged HTH motif, while the C-terminal domains are often dissimilar and bind specific coactivator molecules such as metal ions, drugs, and organic substrates.
Probab=49.76 E-value=1.2e+02 Score=27.40 Aligned_cols=71 Identities=20% Similarity=0.282 Sum_probs=41.3
Q ss_pred CCccchhHHHHH--HHhhhhhHHHHHHHHHHHHHhhhhhHHHHH-HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007566 256 PNRTESEEVSQV--FKDLGILSIETLKRELMEANESRDAALMEV-SEMRSSFGELRQKLEYLEAYCEELKKALRQA 328 (598)
Q Consensus 256 ~~~ae~eE~q~l--lkt~~i~sie~L~~kL~~a~~~RDaa~~Ei-~~lk~sl~eL~~KL~~Le~~~~~Lkk~L~q~ 328 (598)
.....++..+.+ ||+.|+ ++++++.-|...... +..+.++ .-++..+.+|++++++|+.-...|+..+..+
T Consensus 39 Y~~~~i~~l~~I~~lr~~G~-sl~eI~~~l~~~~~~-~~~~~~~~~~l~~~~~~l~~~i~~l~~~~~~l~~~~~~~ 112 (123)
T cd04770 39 YGEADLARLRFIRRAQALGF-SLAEIRELLSLRDDG-AAPCAEVRALLEEKLAEVEAKIAELQALRAELAGLLSAC 112 (123)
T ss_pred CCHHHHHHHHHHHHHHHCCC-CHHHHHHHHHhhhcC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 334456665544 799998 998888766543221 1111222 2245556667777777776666666655544
No 78
>PF02185 HR1: Hr1 repeat; InterPro: IPR000861 The HR1 repeat was first described as a three times repeated homology region of the N-terminal non-catalytic part of protein kinase PRK1(PKN) []. The first two of these repeats were later shown to bind the small G protein rho [, ] known to activate PKN in its GTP-bound form. Similar rho-binding domains also occur in a number of other protein kinases and in the rho-binding proteins rhophilin and rhotekin. Recently, the structure of the N-terminal HR1 repeat complexed with RhoA has been determined by X-ray crystallography []. It forms an antiparallel coiled-coil fold termed an ACC finger. This entry includes domains found within rho-associated protein kinases.; GO: 0007165 signal transduction, 0005622 intracellular; PDB: 1CXZ_B 3O0Z_C 2RMK_B 1URF_A.
Probab=49.74 E-value=1.1e+02 Score=25.45 Aligned_cols=49 Identities=22% Similarity=0.319 Sum_probs=35.9
Q ss_pred HHHHHHHHHHHHhhhhhHHHHHHHHHh-------h-HHHHHHHHHHHHHHHHHHHHHHHHH
Q 007566 276 IETLKRELMEANESRDAALMEVSEMRS-------S-FGELRQKLEYLEAYCEELKKALRQA 328 (598)
Q Consensus 276 ie~L~~kL~~a~~~RDaa~~Ei~~lk~-------s-l~eL~~KL~~Le~~~~~Lkk~L~q~ 328 (598)
+++|.++|.-++.-|+.| | .|.. . +.+.+.+|++.+.+..-|+..|+..
T Consensus 3 i~~L~~~i~~E~ki~~Ga--e--~m~~~~~t~~~~~~~~~~~~l~~s~~kI~~L~~~L~~l 59 (70)
T PF02185_consen 3 IEELQKKIDKELKIKEGA--E--NMLQAYSTDKKKVLSEAESQLRESNQKIELLREQLEKL 59 (70)
T ss_dssp HHHHHHHHHHHHHHHHHH--H--HHHHHHCCHHCH-HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH--H--HHHHHHccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456777777777777775 2 2322 2 6677788889999999999999887
No 79
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=49.61 E-value=1e+02 Score=30.95 Aligned_cols=14 Identities=36% Similarity=0.404 Sum_probs=7.1
Q ss_pred HHHHHHHHHHHHHh
Q 007566 275 SIETLKRELMEANE 288 (598)
Q Consensus 275 sie~L~~kL~~a~~ 288 (598)
..+.|++++++.++
T Consensus 35 ~~~~l~~~i~~~l~ 48 (302)
T PF10186_consen 35 ENEELRRRIEEILE 48 (302)
T ss_pred HHHHHHHHHHHHHH
Confidence 34445555555444
No 80
>PF08172 CASP_C: CASP C terminal; InterPro: IPR012955 This domain is the C-terminal region of the CASP family of proteins. These are Golgi membrane proteins which are thought to have a role in vesicle transport [].; GO: 0006891 intra-Golgi vesicle-mediated transport, 0030173 integral to Golgi membrane
Probab=49.53 E-value=34 Score=35.56 Aligned_cols=44 Identities=25% Similarity=0.319 Sum_probs=37.3
Q ss_pred HHhhhhhHHH-HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 007566 286 ANESRDAALM-EVSEMRSSFGELRQKLEYLEAYCEELKKALRQAA 329 (598)
Q Consensus 286 a~~~RDaa~~-Ei~~lk~sl~eL~~KL~~Le~~~~~Lkk~L~q~~ 329 (598)
--|.|-.+|| |..+++..+..|+.+++.|++.|.+|=+|++=-+
T Consensus 90 RFR~Rn~ELE~elr~~~~~~~~L~~Ev~~L~~DN~kLYEKiRylq 134 (248)
T PF08172_consen 90 RFRQRNAELEEELRKQQQTISSLRREVESLRADNVKLYEKIRYLQ 134 (248)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4456777775 7888889999999999999999999999998663
No 81
>PF05984 Cytomega_UL20A: Cytomegalovirus UL20A protein; InterPro: IPR009245 This family consists of several Cytomegalovirus UL20A proteins. UL20A is thought to be a glycoprotein [].
Probab=49.52 E-value=7.6 Score=34.92 Aligned_cols=16 Identities=38% Similarity=0.839 Sum_probs=14.6
Q ss_pred HHHHHHHHHHhhhhcC
Q 007566 521 AAKCIWLLHLLAFSFN 536 (598)
Q Consensus 521 mAKsVWLLH~LAFSFd 536 (598)
||+++|+|-+||.++-
T Consensus 1 MaRRlwiLslLAVtLt 16 (100)
T PF05984_consen 1 MARRLWILSLLAVTLT 16 (100)
T ss_pred CchhhHHHHHHHHHHH
Confidence 8999999999999865
No 82
>PF09304 Cortex-I_coil: Cortexillin I, coiled coil; InterPro: IPR015383 This domain is predominantly found in the actin-bundling protein cortexillin I from Dictyostelium discoideum (Slime mold). The domain has a structure consisting of an 18-heptad-repeat alpha-helical coiled-coil, and is a prerequisite for the assembly of Cortexillin I []. ; PDB: 1D7M_A.
Probab=48.66 E-value=1.3e+02 Score=28.17 Aligned_cols=30 Identities=17% Similarity=0.277 Sum_probs=24.0
Q ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007566 299 EMRSSFGELRQKLEYLEAYCEELKKALRQA 328 (598)
Q Consensus 299 ~lk~sl~eL~~KL~~Le~~~~~Lkk~L~q~ 328 (598)
+|++++..|+++-.....+|.+|+.+|.+.
T Consensus 41 ~L~~~l~~L~~q~~s~~qr~~eLqaki~ea 70 (107)
T PF09304_consen 41 QLRNALQSLQAQNASRNQRIAELQAKIDEA 70 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 377778888888888888888888888776
No 83
>PRK13169 DNA replication intiation control protein YabA; Reviewed
Probab=48.07 E-value=41 Score=31.27 Aligned_cols=33 Identities=18% Similarity=0.324 Sum_probs=30.5
Q ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007566 296 EVSEMRSSFGELRQKLEYLEAYCEELKKALRQA 328 (598)
Q Consensus 296 Ei~~lk~sl~eL~~KL~~Le~~~~~Lkk~L~q~ 328 (598)
|+.+||..+.+|-++=..|+..|+.|+++|++-
T Consensus 23 el~~LK~~~~el~EEN~~L~iEN~~Lr~~l~~~ 55 (110)
T PRK13169 23 ELGALKKQLAELLEENTALRLENDKLRERLEEL 55 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 788899999999999999999999999999975
No 84
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication. SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.
Probab=47.88 E-value=78 Score=29.17 Aligned_cols=33 Identities=24% Similarity=0.353 Sum_probs=30.7
Q ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007566 296 EVSEMRSSFGELRQKLEYLEAYCEELKKALRQA 328 (598)
Q Consensus 296 Ei~~lk~sl~eL~~KL~~Le~~~~~Lkk~L~q~ 328 (598)
|+.+||..+.+|-++=..|...|+.|.++|.+.
T Consensus 23 ~~~~LK~~~~~l~EEN~~L~~EN~~Lr~~l~~~ 55 (107)
T PF06156_consen 23 ELEELKKQLQELLEENARLRIENEHLRERLEEL 55 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 788899999999999999999999999999886
No 85
>PF07795 DUF1635: Protein of unknown function (DUF1635); InterPro: IPR012862 The members of this family include sequences that are parts of hypothetical proteins expressed by plant species. The region in question is about 170 amino acids long.
Probab=47.50 E-value=89 Score=32.29 Aligned_cols=9 Identities=33% Similarity=0.822 Sum_probs=4.1
Q ss_pred HHHHHHHHH
Q 007566 276 IETLKRELM 284 (598)
Q Consensus 276 ie~L~~kL~ 284 (598)
+|+|+|+|.
T Consensus 3 ~EELRq~Ll 11 (214)
T PF07795_consen 3 MEELRQKLL 11 (214)
T ss_pred HHHHHHHHH
Confidence 344444444
No 86
>PRK14142 heat shock protein GrpE; Provisional
Probab=47.48 E-value=20 Score=37.06 Aligned_cols=49 Identities=16% Similarity=0.268 Sum_probs=35.3
Q ss_pred CCCccchhhhhhhccccccCC-CCCeEEEEeeCCceeCCeEEE-eEEEeee
Q 007566 546 DNRSFDAHYMEDMLMDRQKSH-GSSRVKIMVMPGFYVQDKVLR-CKVLCRY 594 (598)
Q Consensus 546 rG~~Fs~vYMEsVv~~~~~~~-~~~~VgftV~PGFkVg~tVIK-crVYLs~ 594 (598)
.|..|||.+.|-|........ .+..|.-.+-+||++++.||+ ++|-++.
T Consensus 132 ~Ge~FDP~~HEAv~~ve~~e~~~~~tVveV~QkGYkL~dRVLRPA~V~Vsk 182 (223)
T PRK14142 132 EGEDFDPVLHEAVQHEGDGGQGSKPVIGTVMRQGYQLGEQVLRHALVGVVD 182 (223)
T ss_pred CCCCCChhhhceeeeecCCCCCCCCEEEEEecCCcEeCCEeccCceEEECC
Confidence 599999999999854322221 223677788899999999997 4665554
No 87
>PF05615 THOC7: Tho complex subunit 7; InterPro: IPR008501 The Tho complex (THOC) is involved in transcription elongation and mRNA export from the nucleus []. This entry represents the subunit THOC7, which is found in higher eukaryotes, and the non-homologous subunit Mft1p found in yeast. The funtions of these subunits are unknown, and it is not known if these subunits are functionally equivalent.
Probab=47.43 E-value=77 Score=29.45 Aligned_cols=50 Identities=24% Similarity=0.201 Sum_probs=27.6
Q ss_pred ccccccccccccCCCCCCCCc--------cchhHHHHHHHhhhhhHHHHHHHHHHHHHhhh
Q 007566 238 VLSWLFPRLKKKHKSENSPNR--------TESEEVSQVFKDLGILSIETLKRELMEANESR 290 (598)
Q Consensus 238 ~~~~l~~~~~kk~~~~~s~~~--------ae~eE~q~llkt~~i~sie~L~~kL~~a~~~R 290 (598)
-|+-|.-++.+|.+...+++. ...+.+...|.+|+. ++ ++-++..+..+|
T Consensus 17 ~l~~l~k~~~~~~~~~~~~~~~~~~e~~~~~~e~~l~~l~~~e~-~~--~k~q~~~~~n~~ 74 (139)
T PF05615_consen 17 PLKRLLKRFLKWCNLSDSILSGQPSEESQFLYERLLKELAQFEF-SI--LKSQLILEMNKR 74 (139)
T ss_pred hHHHHHHHHHHHHhhhccccccccchhHHHHHHHHHHHHHHHHH-HH--HHHHHHHHHHHH
Confidence 577777788888877665533 124444555566665 33 333444444333
No 88
>PRK14164 heat shock protein GrpE; Provisional
Probab=47.41 E-value=20 Score=36.86 Aligned_cols=33 Identities=15% Similarity=0.265 Sum_probs=28.4
Q ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007566 296 EVSEMRSSFGELRQKLEYLEAYCEELKKALRQA 328 (598)
Q Consensus 296 Ei~~lk~sl~eL~~KL~~Le~~~~~Lkk~L~q~ 328 (598)
++..++..+.+|+.++.++.+..++++|+....
T Consensus 78 ~~~~le~el~el~d~llR~~AE~eN~RkR~~rE 110 (218)
T PRK14164 78 EASTVEAQLAERTEDLQRVTAEYANYRRRTERE 110 (218)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 677788888899999999999999999988655
No 89
>PRK00888 ftsB cell division protein FtsB; Reviewed
Probab=46.54 E-value=45 Score=30.31 Aligned_cols=28 Identities=14% Similarity=0.156 Sum_probs=14.8
Q ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 007566 300 MRSSFGELRQKLEYLEAYCEELKKALRQ 327 (598)
Q Consensus 300 lk~sl~eL~~KL~~Le~~~~~Lkk~L~q 327 (598)
++..+.++++++++++++|..|+..++.
T Consensus 32 l~~q~~~~~~e~~~l~~~n~~L~~eI~~ 59 (105)
T PRK00888 32 VNDQVAAQQQTNAKLKARNDQLFAEIDD 59 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334445555555555555555555554
No 90
>PF07200 Mod_r: Modifier of rudimentary (Mod(r)) protein; InterPro: IPR009851 This entry represents a conserved region approximately 150 residues long within a number of eukaryotic proteins that show homology with Drosophila melanogaster Modifier of rudimentary (Mod(r)) proteins. The N-terminal half of Mod(r) proteins is acidic, whereas the C-terminal half is basic [], and both of these regions are represented in this family.; PDB: 2CAZ_F 2P22_C 2F66_F.
Probab=46.52 E-value=1.7e+02 Score=27.24 Aligned_cols=45 Identities=33% Similarity=0.415 Sum_probs=32.4
Q ss_pred HHHHHHHhhhhhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007566 281 RELMEANESRDAALMEVSEMRSSFGELRQKLEYLEAYCEELKKALRQA 328 (598)
Q Consensus 281 ~kL~~a~~~RDaa~~Ei~~lk~sl~eL~~KL~~Le~~~~~Lkk~L~q~ 328 (598)
.+|...|-.+.. ++.++|..+.++-.++..|+..+.++++++...
T Consensus 44 ~~lAe~nL~~~~---~l~~~r~~l~~~~~~~~~L~~~~~~k~~~~~~l 88 (150)
T PF07200_consen 44 EELAEQNLSLEP---ELEELRSQLQELYEELKELESEYQEKEQQQDEL 88 (150)
T ss_dssp HHHHHHH----H---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhcccch---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444555 477789999999999999999999999888776
No 91
>PF04880 NUDE_C: NUDE protein, C-terminal conserved region; InterPro: IPR006964 This domain represents the C-terminal conserved region of NUDE proteins. Emericella nidulans (Aspergillus nidulans) NUDE, acts in the cytoplasmic dynein/dynactin pathway and is required for distribution of nuclei []. It is a homologue of the nuclear distribution protein RO11 of Neurospora crassa. NUDE interacts with the NUDF via an N-terminal coiled coil domain; this is the only domain which is absolutely required for NUDE function.; PDB: 2V66_B 2V71_B.
Probab=46.50 E-value=21 Score=35.25 Aligned_cols=33 Identities=18% Similarity=0.372 Sum_probs=12.5
Q ss_pred HHHHHhhhhhHHHHHHHHHhhHHHHHHHHHHHHH
Q 007566 283 LMEANESRDAALMEVSEMRSSFGELRQKLEYLEA 316 (598)
Q Consensus 283 L~~a~~~RDaa~~Ei~~lk~sl~eL~~KL~~Le~ 316 (598)
|++|+++|+.-.+|+-|||-.+.+|+++| .+..
T Consensus 19 LE~ELdEKE~L~~~~QRLkDE~RDLKqEl-~V~e 51 (166)
T PF04880_consen 19 LESELDEKENLREEVQRLKDELRDLKQEL-IVQE 51 (166)
T ss_dssp HHHHHHHHHHHHHCH-------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHH
Confidence 67777899987789999999999999999 4443
No 92
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=45.42 E-value=85 Score=31.52 Aligned_cols=52 Identities=25% Similarity=0.329 Sum_probs=36.4
Q ss_pred HHHHHHHHHHHHhhhhhHHH-HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007566 276 IETLKRELMEANESRDAALM-EVSEMRSSFGELRQKLEYLEAYCEELKKALRQA 328 (598)
Q Consensus 276 ie~L~~kL~~a~~~RDaa~~-Ei~~lk~sl~eL~~KL~~Le~~~~~Lkk~L~q~ 328 (598)
|.+|+.++. +.++++...+ ++.++...-..|.+-|..++..+.+|++.|..-
T Consensus 29 IksLKeei~-emkk~e~~~~k~m~ei~~eN~~L~epL~~a~~e~~eL~k~L~~y 81 (201)
T PF13851_consen 29 IKSLKEEIA-EMKKKEERNEKLMAEISQENKRLSEPLKKAEEEVEELRKQLKNY 81 (201)
T ss_pred HHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 344555544 5555655543 566666777788888888999999999988876
No 93
>KOG4196 consensus bZIP transcription factor MafK [Transcription]
Probab=44.88 E-value=53 Score=31.69 Aligned_cols=29 Identities=21% Similarity=0.399 Sum_probs=19.7
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Q 007566 295 MEVSEMRSSFGELRQKLEYLEAYCEELKK 323 (598)
Q Consensus 295 ~Ei~~lk~sl~eL~~KL~~Le~~~~~Lkk 323 (598)
+|+..|+.....++.+++.+..+|..|--
T Consensus 88 qqv~~L~~e~s~~~~E~da~k~k~e~l~~ 116 (135)
T KOG4196|consen 88 QQVEKLKEENSRLRRELDAYKSKYEALQN 116 (135)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 37777777777777777777776655543
No 94
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=44.66 E-value=2.1e+02 Score=24.76 Aligned_cols=14 Identities=21% Similarity=0.378 Sum_probs=5.5
Q ss_pred HHHHHhhHHHHHHH
Q 007566 297 VSEMRSSFGELRQK 310 (598)
Q Consensus 297 i~~lk~sl~eL~~K 310 (598)
|..|+-.+.+|+++
T Consensus 20 i~~Lq~e~eeLke~ 33 (72)
T PF06005_consen 20 IALLQMENEELKEK 33 (72)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 33333333344444
No 95
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=44.62 E-value=1e+02 Score=28.93 Aligned_cols=47 Identities=23% Similarity=0.274 Sum_probs=29.7
Q ss_pred HHHHHHHHHHhhhhhHH----HHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Q 007566 278 TLKRELMEANESRDAAL----MEVSEMRSSFGELRQKLEYLEAYCEELKKA 324 (598)
Q Consensus 278 ~L~~kL~~a~~~RDaa~----~Ei~~lk~sl~eL~~KL~~Le~~~~~Lkk~ 324 (598)
.+..+|.++++.|+.++ +|+.++...=+.|+++|-.|...|.+++..
T Consensus 16 ~~ve~L~s~lr~~E~E~~~l~~el~~l~~~r~~l~~Eiv~l~~~~e~~~~~ 66 (120)
T PF12325_consen 16 QLVERLQSQLRRLEGELASLQEELARLEAERDELREEIVKLMEENEELRAL 66 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45678888888888864 255555555555566666666666555443
No 96
>PF13747 DUF4164: Domain of unknown function (DUF4164)
Probab=44.41 E-value=1e+02 Score=27.35 Aligned_cols=42 Identities=26% Similarity=0.349 Sum_probs=26.9
Q ss_pred HHhhhhhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 007566 286 ANESRDAALMEVSEMRSSFGELRQKLEYLEAYCEELKKALRQ 327 (598)
Q Consensus 286 a~~~RDaa~~Ei~~lk~sl~eL~~KL~~Le~~~~~Lkk~L~q 327 (598)
..++++..-.||.+|..--..|.++|+..+.+|.+|+..=++
T Consensus 30 ~~~~~~~~e~ei~~l~~dr~rLa~eLD~~~ar~~~Le~~~~E 71 (89)
T PF13747_consen 30 RDRKRDELEEEIQRLDADRSRLAQELDQAEARANRLEEANRE 71 (89)
T ss_pred hhhhhhhHHHHHHHHHhhHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 444444433477777777777777777777777776654333
No 97
>cd04785 HTH_CadR-PbrR-like Helix-Turn-Helix DNA binding domain of the CadR- and PbrR-like transcription regulators. Helix-turn-helix (HTH) CadR- and PbrR-like transcription regulators. CadR and PbrR regulate expression of the cadmium and lead resistance operons, respectively. These proteins are comprised of distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their conserved N-terminal domains contain predicted winged HTH motifs that mediate DNA binding, while the C-terminal domains have three conserved cysteines which comprise a putative metal binding site. Some members in this group have a histidine-rich C-terminal extension. These proteins share the N-terminal DNA binding domain with other transcription regulators of the MerR superfamily that promote transcription by reconfiguring the spacer between the -35 and -10 promoter elements.
Probab=44.01 E-value=1.5e+02 Score=27.29 Aligned_cols=72 Identities=21% Similarity=0.328 Sum_probs=43.8
Q ss_pred CCCccchhHHHHH--HHhhhhhHHHHHHHHHHHHHhhhhhHHHHH-HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007566 255 SPNRTESEEVSQV--FKDLGILSIETLKRELMEANESRDAALMEV-SEMRSSFGELRQKLEYLEAYCEELKKALRQA 328 (598)
Q Consensus 255 s~~~ae~eE~q~l--lkt~~i~sie~L~~kL~~a~~~RDaa~~Ei-~~lk~sl~eL~~KL~~Le~~~~~Lkk~L~q~ 328 (598)
-.....++..+.+ ||..|+ ++++++.=|... ...+..+.++ .-++..+.++++++++|+.-...|+..+..+
T Consensus 38 ~Y~~~~l~~l~~I~~lr~~G~-sL~eI~~~l~~~-~~~~~~~~~~~~~l~~~~~~l~~~i~~L~~~~~~L~~~~~~~ 112 (126)
T cd04785 38 LYGAAHVERLRFIRRARDLGF-SLEEIRALLALS-DRPDRSCAEADAIARAHLADVRARIADLRRLEAELKRMVAAC 112 (126)
T ss_pred ccCHHHHHHHHHHHHHHHCCC-CHHHHHHHHhhh-hcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 3344456655544 688887 888877655422 2211111122 2245667788888888888888888877666
No 98
>PF04508 Pox_A_type_inc: Viral A-type inclusion protein repeat ; InterPro: IPR007596 The repeat is found in the A-type inclusion protein of the Poxvirus family [].; GO: 0016032 viral reproduction
Probab=43.80 E-value=23 Score=24.82 Aligned_cols=18 Identities=22% Similarity=0.514 Sum_probs=9.2
Q ss_pred HHHHHHhhHHHHHHHHHH
Q 007566 296 EVSEMRSSFGELRQKLEY 313 (598)
Q Consensus 296 Ei~~lk~sl~eL~~KL~~ 313 (598)
|+.++|.-|.+|+++|.+
T Consensus 2 E~~rlr~rI~dLer~L~~ 19 (23)
T PF04508_consen 2 EMNRLRNRISDLERQLSE 19 (23)
T ss_pred hHHHHHHHHHHHHHHHHH
Confidence 455555555555555543
No 99
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=43.74 E-value=76 Score=33.39 Aligned_cols=33 Identities=18% Similarity=0.216 Sum_probs=25.6
Q ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007566 296 EVSEMRSSFGELRQKLEYLEAYCEELKKALRQA 328 (598)
Q Consensus 296 Ei~~lk~sl~eL~~KL~~Le~~~~~Lkk~L~q~ 328 (598)
++.+++.....|++++..|..+...|++++++.
T Consensus 171 rlk~le~E~s~LeE~~~~l~~ev~~L~~r~~EL 203 (290)
T COG4026 171 RLKRLEVENSRLEEMLKKLPGEVYDLKKRWDEL 203 (290)
T ss_pred HHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHh
Confidence 466677777788888888888888888888775
No 100
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=43.70 E-value=2.1e+02 Score=28.56 Aligned_cols=33 Identities=24% Similarity=0.398 Sum_probs=26.6
Q ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007566 296 EVSEMRSSFGELRQKLEYLEAYCEELKKALRQA 328 (598)
Q Consensus 296 Ei~~lk~sl~eL~~KL~~Le~~~~~Lkk~L~q~ 328 (598)
+...++..+..|+++++.++....+|+.+|...
T Consensus 63 ~~~~~~~~~~~l~~~~~~~~~~i~~l~~~i~~~ 95 (188)
T PF03962_consen 63 AKQKRQNKLEKLQKEIEELEKKIEELEEKIEEA 95 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455566677888888888888888888888877
No 101
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=42.39 E-value=1.6e+02 Score=29.67 Aligned_cols=33 Identities=27% Similarity=0.396 Sum_probs=22.1
Q ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007566 296 EVSEMRSSFGELRQKLEYLEAYCEELKKALRQA 328 (598)
Q Consensus 296 Ei~~lk~sl~eL~~KL~~Le~~~~~Lkk~L~q~ 328 (598)
|+..++-.-..|.+++..++..+.+|..+...+
T Consensus 101 ~l~~Lk~e~evL~qr~~kle~ErdeL~~kf~~~ 133 (201)
T PF13851_consen 101 ELKDLKWEHEVLEQRFEKLEQERDELYRKFESA 133 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555566666667777777777777777666655
No 102
>KOG1853 consensus LIS1-interacting protein NUDE [Cytoskeleton]
Probab=41.67 E-value=53 Score=35.02 Aligned_cols=39 Identities=31% Similarity=0.491 Sum_probs=22.1
Q ss_pred hhHHHHHHHHHHHHHh----------hhhhHHHHHHHHHhhHHHHHHHH
Q 007566 273 ILSIETLKRELMEANE----------SRDAALMEVSEMRSSFGELRQKL 311 (598)
Q Consensus 273 i~sie~L~~kL~~a~~----------~RDaa~~Ei~~lk~sl~eL~~KL 311 (598)
|++++.+.++|-.|++ .|...++++-|||...-+|+++|
T Consensus 132 i~sleDfeqrLnqAIErnAfLESELdEke~llesvqRLkdEardlrqel 180 (333)
T KOG1853|consen 132 IYSLEDFEQRLNQAIERNAFLESELDEKEVLLESVQRLKDEARDLRQEL 180 (333)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6677777777655554 34444445555555555555554
No 103
>PF10205 KLRAQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019343 This entry represents a N-terminal 100 residues long domain, which contains a conserved KLRAQ motif. This domain is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain a C-terminal TTKRSYEDQ motif domain (IPR019348 from INTERPRO). The function of these proteins is not known.
Probab=41.53 E-value=2.2e+02 Score=26.47 Aligned_cols=37 Identities=24% Similarity=0.285 Sum_probs=26.2
Q ss_pred HHHHHHhhhhhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007566 282 ELMEANESRDAALMEVSEMRSSFGELRQKLEYLEAYCEELKKALRQA 328 (598)
Q Consensus 282 kL~~a~~~RDaa~~Ei~~lk~sl~eL~~KL~~Le~~~~~Lkk~L~q~ 328 (598)
+|.+.++.+|.+ |-.++++++.|.=+|..|.|++..-
T Consensus 30 ~L~e~Lk~ke~~----------LRk~eqE~dSL~FrN~QL~kRV~~L 66 (102)
T PF10205_consen 30 ELKEQLKEKEQA----------LRKLEQENDSLTFRNQQLTKRVEVL 66 (102)
T ss_pred HHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444455555553 5577788888888888888888766
No 104
>PF07851 TMPIT: TMPIT-like protein; InterPro: IPR012926 A number of members of this family are annotated as being transmembrane proteins induced by tumour necrosis factor alpha, but no literature was found to support this. ; GO: 0016021 integral to membrane
Probab=41.19 E-value=1.8e+02 Score=31.93 Aligned_cols=53 Identities=19% Similarity=0.337 Sum_probs=38.9
Q ss_pred HHHHHHHHHHHhhhhhHHHHHHHHHhhHHHHHHHHHHH--------HHHHHHHHHHHHHHh
Q 007566 277 ETLKRELMEANESRDAALMEVSEMRSSFGELRQKLEYL--------EAYCEELKKALRQAA 329 (598)
Q Consensus 277 e~L~~kL~~a~~~RDaa~~Ei~~lk~sl~eL~~KL~~L--------e~~~~~Lkk~L~q~~ 329 (598)
...++||++.....+.-.-.|.+.|..|.+|.+.|..+ ....++|++.|+++.
T Consensus 21 r~Y~qKleel~~lQ~~C~ssI~~QkkrLk~L~~sLk~~~~~~~~e~~~~i~~L~~~Ik~r~ 81 (330)
T PF07851_consen 21 RSYKQKLEELSKLQDKCSSSISHQKKRLKELKKSLKRCKKSLSAEERELIEKLEEDIKERR 81 (330)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCChhHHHHHHHHHHHHHHHH
Confidence 34667777666666666567888888888888888887 455677777777763
No 105
>cd01108 HTH_CueR Helix-Turn-Helix DNA binding domain of CueR-like transcription regulators. Helix-turn-helix (HTH) transcription regulators CueR and ActP, copper efflux regulators. In Bacillus subtilis, copper induced CueR regulates the copZA operon, preventing copper toxicity. In Rhizobium leguminosarum, ActP controls copper homeostasis; it detects cytoplasmic copper stress and activates transcription in response to increasing copper concentrations. These proteins are comprised of two distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their conserved N-terminal domains contain winged HTH motifs that mediate DNA binding, while the C-terminal domains have two conserved cysteines that define a monovalent copper ion binding site. These proteins share the N-terminal DNA binding domain with other transcription regulators of the MerR superfamily that promote transcription by reconfiguring the spacer between the -35 and -10 promoter elements
Probab=40.97 E-value=1.7e+02 Score=26.83 Aligned_cols=72 Identities=22% Similarity=0.268 Sum_probs=38.8
Q ss_pred CCCccchhHHHHH--HHhhhhhHHHHHHHHHHHHHhhhhhHHHH-HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007566 255 SPNRTESEEVSQV--FKDLGILSIETLKRELMEANESRDAALME-VSEMRSSFGELRQKLEYLEAYCEELKKALRQA 328 (598)
Q Consensus 255 s~~~ae~eE~q~l--lkt~~i~sie~L~~kL~~a~~~RDaa~~E-i~~lk~sl~eL~~KL~~Le~~~~~Lkk~L~q~ 328 (598)
-....+++..+.+ ||..|+ +++++++=|.. ...-+..+.+ ..-++..+.++++++++|+.-...|+..+..+
T Consensus 38 ~Y~~~~~~~l~~I~~lr~~G~-sL~eI~~~l~~-~~~~~~~~~~~~~~l~~~~~~l~~~i~~L~~~~~~l~~~~~~~ 112 (127)
T cd01108 38 VYNQRDIEELRFIRRARDLGF-SLEEIRELLAL-WRDPSRASADVKALALEHIAELERKIAELQAMRRTLQQLADSC 112 (127)
T ss_pred ecCHHHHHHHHHHHHHHHcCC-CHHHHHHHHHH-HhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 3344466666644 688887 88888765542 2211111112 12244455566666666666666666555544
No 106
>TIGR02051 MerR Hg(II)-responsive transcriptional regulator. This model represents the mercury (II) responsive transcriptional activator of the mer organomercurial resistance operon. This protein is a member of the MerR family of transcriptional activators (pfam00376) and contains a distinctive pattern of cysteine residues in its metal binding loop, Cys-X(8)-Cys-Pro, as well as a conserved and critical cysteine at the N-terminal end of the dimerization helix.
Probab=40.90 E-value=1.1e+02 Score=27.98 Aligned_cols=69 Identities=14% Similarity=0.158 Sum_probs=40.6
Q ss_pred CccchhHHHHH--HHhhhhhHHHHHHHHHHHHHhhhhhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007566 257 NRTESEEVSQV--FKDLGILSIETLKRELMEANESRDAALMEVSEMRSSFGELRQKLEYLEAYCEELKKALRQA 328 (598)
Q Consensus 257 ~~ae~eE~q~l--lkt~~i~sie~L~~kL~~a~~~RDaa~~Ei~~lk~sl~eL~~KL~~Le~~~~~Lkk~L~q~ 328 (598)
....++..+.+ ||+.|+ ++++++.=|..........+ ..-+...+.++++++++|+.-...|+..+..+
T Consensus 39 ~~~~l~~l~~I~~l~~~G~-sl~eI~~~l~~~~~~~~~~~--~~~l~~~~~~l~~~i~~L~~~~~~L~~~~~~~ 109 (124)
T TIGR02051 39 PEETVKRLRFIKRAQELGF-SLEEIGGLLGLVDGTHCREM--YELASRKLKSVQAKMADLLRIERLLEELLEQC 109 (124)
T ss_pred CHHHHHHHHHHHHHHHCCC-CHHHHHHHHhcccCCCHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 33455555533 788898 88888766653221101111 22344556777777777777777777766655
No 107
>KOG2264 consensus Exostosin EXT1L [Signal transduction mechanisms]
Probab=40.87 E-value=1.2e+02 Score=35.73 Aligned_cols=33 Identities=24% Similarity=0.347 Sum_probs=20.7
Q ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007566 296 EVSEMRSSFGELRQKLEYLEAYCEELKKALRQA 328 (598)
Q Consensus 296 Ei~~lk~sl~eL~~KL~~Le~~~~~Lkk~L~q~ 328 (598)
||+++..-+++|++.|...+.+...||--++|+
T Consensus 108 eI~~~n~kiEelk~~i~~~q~eL~~Lk~~ieqa 140 (907)
T KOG2264|consen 108 EIEEINTKIEELKRLIPQKQLELSALKGEIEQA 140 (907)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHhHHHHH
Confidence 566666666666666666666666666555554
No 108
>PF10475 DUF2450: Protein of unknown function N-terminal domain (DUF2450) ; InterPro: IPR019515 This entry represents Vacuolar protein sorting-associated protein 54, and is thought to be involved in retrograde transport from early and late endosomes to late Golgi found in eukaryotes, but its function is not known.
Probab=40.69 E-value=1.4e+02 Score=31.10 Aligned_cols=62 Identities=21% Similarity=0.391 Sum_probs=46.3
Q ss_pred chhHHHHHHHhh-hhhHHHHHHHHHHHHHhhhhhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 007566 260 ESEEVSQVFKDL-GILSIETLKRELMEANESRDAALMEVSEMRSSFGELRQKLEYLEAYCEELKKALRQAA 329 (598)
Q Consensus 260 e~eE~q~llkt~-~i~sie~L~~kL~~a~~~RDaa~~Ei~~lk~sl~eL~~KL~~Le~~~~~Lkk~L~q~~ 329 (598)
.+++.+.-|+.| ++ ...+|...+.+|-.+. -.....+.+|+++|...-..|.++++.|+...
T Consensus 32 ~i~~~~ekLs~~ldv-----Ve~~L~~~I~~~s~~f---~~a~~~v~el~~~l~~a~~~~~~~R~~L~~~~ 94 (291)
T PF10475_consen 32 DIEELQEKLSHYLDV-----VEKKLSREISEKSDSF---FQAMSSVQELQDELEEALVICKNLRRNLKSAD 94 (291)
T ss_pred HHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 466666666555 66 4457777777777763 33445677999999999999999999999873
No 109
>smart00338 BRLZ basic region leucin zipper.
Probab=40.49 E-value=1.5e+02 Score=24.20 Aligned_cols=28 Identities=39% Similarity=0.525 Sum_probs=21.6
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007566 301 RSSFGELRQKLEYLEAYCEELKKALRQA 328 (598)
Q Consensus 301 k~sl~eL~~KL~~Le~~~~~Lkk~L~q~ 328 (598)
+..+.+|+.+++.|+..|..|..++..-
T Consensus 25 k~~~~~Le~~~~~L~~en~~L~~~~~~l 52 (65)
T smart00338 25 KAEIEELERKVEQLEAENERLKKEIERL 52 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556788888888888888888877765
No 110
>cd04783 HTH_MerR1 Helix-Turn-Helix DNA binding domain of the MerR1 transcription regulator. Helix-turn-helix (HTH) transcription regulator MerR1. MerR1 transcription regulators, such as Tn21 MerR and Tn501 MerR, mediate response to mercury exposure in eubacteria. These proteins are comprised of distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their conserved N-terminal domains contain winged HTH motifs that mediate DNA binding, while the C-terminal domains have three conserved cysteines that define a mercury binding site. These proteins share the N-terminal DNA binding domain with other transcription regulators of the MerR superfamily that promote transcription by reconfiguring the spacer between the -35 and -10 promoter elements.
Probab=40.43 E-value=1.3e+02 Score=27.47 Aligned_cols=69 Identities=13% Similarity=0.187 Sum_probs=40.3
Q ss_pred CCccchhHHHH--HHHhhhhhHHHHHHHHHHHHHhhhhhHHHHH-HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007566 256 PNRTESEEVSQ--VFKDLGILSIETLKRELMEANESRDAALMEV-SEMRSSFGELRQKLEYLEAYCEELKKALRQA 328 (598)
Q Consensus 256 ~~~ae~eE~q~--llkt~~i~sie~L~~kL~~a~~~RDaa~~Ei-~~lk~sl~eL~~KL~~Le~~~~~Lkk~L~q~ 328 (598)
.....++.... .||..|+ ++++++.=|...... .+.++ .-++..+.+|++++++|+.-...|...+..+
T Consensus 39 Y~~~~l~~l~~I~~lr~~G~-sL~eI~~~l~~~~~~---~~~~~~~~l~~~~~~l~~~i~~L~~~~~~l~~~~~~~ 110 (126)
T cd04783 39 YPEETVTRLRFIKRAQELGF-TLDEIAELLELDDGT---DCSEARELAEQKLAEVDEKIADLQRMRASLQELVSQC 110 (126)
T ss_pred cCHHHHHHHHHHHHHHHcCC-CHHHHHHHHhcccCC---CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 33445555553 3788997 888877655422111 11111 1234556677778877777777777777665
No 111
>PF00170 bZIP_1: bZIP transcription factor cAMP response element binding (CREB) protein signature fos transforming protein signature jun transcription factor signature; InterPro: IPR011616 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotic are proteins that contain a basic region mediating sequence-specific DNA-binding followed by a leucine zipper region (see IPR002158 from INTERPRO) required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2H7H_B 2OQQ_B 1S9K_E 1JNM_A 1JUN_A 1FOS_H 1A02_J 1T2K_C 1CI6_A 1DH3_C ....
Probab=40.34 E-value=1e+02 Score=25.05 Aligned_cols=25 Identities=52% Similarity=0.581 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 007566 304 FGELRQKLEYLEAYCEELKKALRQA 328 (598)
Q Consensus 304 l~eL~~KL~~Le~~~~~Lkk~L~q~ 328 (598)
+.+|+.++..|+..|..|++.+...
T Consensus 28 ~~~Le~~~~~L~~en~~L~~~~~~L 52 (64)
T PF00170_consen 28 IEELEEKVEELESENEELKKELEQL 52 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456666666666666666555443
No 112
>PRK13922 rod shape-determining protein MreC; Provisional
Probab=40.01 E-value=1.2e+02 Score=31.03 Aligned_cols=43 Identities=26% Similarity=0.206 Sum_probs=25.9
Q ss_pred HHhhhhhHHHHHHHHHhhHHHHHHHHH---HHHHHHHHHHHHHHHH
Q 007566 286 ANESRDAALMEVSEMRSSFGELRQKLE---YLEAYCEELKKALRQA 328 (598)
Q Consensus 286 a~~~RDaa~~Ei~~lk~sl~eL~~KL~---~Le~~~~~Lkk~L~q~ 328 (598)
.........+|..+||..+.+|+.++. +++.+|.+|++-|+-.
T Consensus 67 ~~~~~~~l~~en~~L~~e~~~l~~~~~~~~~l~~en~~L~~lL~~~ 112 (276)
T PRK13922 67 SLASLFDLREENEELKKELLELESRLQELEQLEAENARLRELLNLK 112 (276)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCc
Confidence 333444444466666666666666665 6667777777766543
No 113
>cd04787 HTH_HMRTR_unk Helix-Turn-Helix DNA binding domain of putative Heavy Metal Resistance transcription regulators. Putative helix-turn-helix (HTH) heavy metal resistance transcription regulators (HMRTR), unknown subgroup. Based on sequence similarity, these proteins are predicted to function as transcription regulators that mediate responses to heavy metal stress in eubacteria. They belong to the MerR superfamily of transcription regulators that promote transcription of various stress regulons by reconfiguring the operator sequence located between the -35 and -10 promoter elements. A typical MerR regulator is comprised of two distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their N-terminal domains are homologous and contain a DNA-binding winged HTH motif, while the C-terminal domains are often dissimilar and bind specific coactivator molecules, such as, metal ions, drugs, and organic substrates. This subgroup lacks one of the c
Probab=39.89 E-value=1.7e+02 Score=27.08 Aligned_cols=72 Identities=14% Similarity=0.205 Sum_probs=41.5
Q ss_pred CCCccchhHHHH--HHHhhhhhHHHHHHHHHHHHHhhhhhHHHH-HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007566 255 SPNRTESEEVSQ--VFKDLGILSIETLKRELMEANESRDAALME-VSEMRSSFGELRQKLEYLEAYCEELKKALRQA 328 (598)
Q Consensus 255 s~~~ae~eE~q~--llkt~~i~sie~L~~kL~~a~~~RDaa~~E-i~~lk~sl~eL~~KL~~Le~~~~~Lkk~L~q~ 328 (598)
......++-..- .||..|+ ++++++.=|..... -+..+.+ ..-++..+.+|++++++|+.-...|+..|...
T Consensus 38 ~Y~~~~~~~l~~I~~lr~~G~-sL~eI~~~l~~~~~-~~~~~~~~~~~l~~~~~~l~~~i~~l~~~~~~l~~~~~~~ 112 (133)
T cd04787 38 LYSEKDLSRLRFILSARQLGF-SLKDIKEILSHADQ-GESPCPMVRRLIEQRLAETERRIKELLKLRDRMQQAVSQW 112 (133)
T ss_pred eCCHHHHHHHHHHHHHHHcCC-CHHHHHHHHhhhcc-CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445555553 3788897 88887765543221 1111111 12245556777777777777777777766654
No 114
>PF05529 Bap31: B-cell receptor-associated protein 31-like ; InterPro: IPR008417 Bap31 is a polytopic integral protein of the endoplasmic reticulum membrane and a substrate of caspase-8. Bap31 is cleaved within its cytosolic domain, generating pro-apoptotic p20 Bap31 [].; GO: 0006886 intracellular protein transport, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=39.36 E-value=1.3e+02 Score=29.34 Aligned_cols=32 Identities=25% Similarity=0.268 Sum_probs=24.9
Q ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007566 297 VSEMRSSFGELRQKLEYLEAYCEELKKALRQA 328 (598)
Q Consensus 297 i~~lk~sl~eL~~KL~~Le~~~~~Lkk~L~q~ 328 (598)
....+..+.+|+++|+..+...+.|+++.+.-
T Consensus 156 ~~~~~~ei~~lk~el~~~~~~~~~LkkQ~~~l 187 (192)
T PF05529_consen 156 NKKLSEEIEKLKKELEKKEKEIEALKKQSEGL 187 (192)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34456677788888888888888999888764
No 115
>PRK02793 phi X174 lysis protein; Provisional
Probab=39.32 E-value=1.8e+02 Score=24.90 Aligned_cols=45 Identities=13% Similarity=0.166 Sum_probs=34.0
Q ss_pred HHHHHHHhhhhhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007566 281 RELMEANESRDAALMEVSEMRSSFGELRQKLEYLEAYCEELKKALRQA 328 (598)
Q Consensus 281 ~kL~~a~~~RDaa~~Ei~~lk~sl~eL~~KL~~Le~~~~~Lkk~L~q~ 328 (598)
-+|+..+..-+.. |.+|-..+.+.+++|+.|+..+..|..+|+..
T Consensus 11 ~~LE~~lafQe~t---Ie~Ln~~v~~Qq~~I~~L~~~l~~L~~rl~~~ 55 (72)
T PRK02793 11 AELESRLAFQEIT---IEELNVTVTAHEMEMAKLRDHLRLLTEKLKAS 55 (72)
T ss_pred HHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4555555566665 55566778888899999999999999999876
No 116
>PF08606 Prp19: Prp19/Pso4-like; InterPro: IPR013915 This region is found specifically in PRP19-like protein. The region represented by this protein covers the sequence implicated in self-interaction and a coiled-coiled motif []. PRP19-like proteins form an oligomer that is necessary for spliceosome assembly [].
Probab=39.30 E-value=88 Score=27.26 Aligned_cols=37 Identities=24% Similarity=0.238 Sum_probs=27.8
Q ss_pred HHHHHHHHHHHhhhhhHHHHHHHHHhhHHHHHHHHHH
Q 007566 277 ETLKRELMEANESRDAALMEVSEMRSSFGELRQKLEY 313 (598)
Q Consensus 277 e~L~~kL~~a~~~RDaa~~Ei~~lk~sl~eL~~KL~~ 313 (598)
+.+++||-.++=..|+|+.=|+|+-..-+++++.|..
T Consensus 32 ~~~rqELs~aLYq~DAA~RViArl~kErd~ar~~l~~ 68 (70)
T PF08606_consen 32 DQTRQELSHALYQHDAACRVIARLLKERDEAREALAE 68 (70)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHhHHHHHHHHHh
Confidence 3578899999999999988878766666666665554
No 117
>TIGR02043 ZntR Zn(II)-responsive transcriptional regulator. This model represents the zinc and cadmium (II) responsive transcriptional activator of the gamma proteobacterial zinc efflux system. This protein is a member of the MerR family of transcriptional activators (pfam00376) and contains a distinctive pattern of cysteine residues in its metal binding loop, Cys-Cys-X(8-9)-Cys, as well as a conserved and critical cysteine at the N-terminal end of the dimerization helix.
Probab=39.18 E-value=1.5e+02 Score=27.43 Aligned_cols=71 Identities=17% Similarity=0.261 Sum_probs=40.1
Q ss_pred CccchhHHHHH--HHhhhhhHHHHHHHHHHHHHhhhhhHHHHH-HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007566 257 NRTESEEVSQV--FKDLGILSIETLKRELMEANESRDAALMEV-SEMRSSFGELRQKLEYLEAYCEELKKALRQA 328 (598)
Q Consensus 257 ~~ae~eE~q~l--lkt~~i~sie~L~~kL~~a~~~RDaa~~Ei-~~lk~sl~eL~~KL~~Le~~~~~Lkk~L~q~ 328 (598)
....++....+ ||..|+ ++++++.=|......-+..+.++ .-++..+.+|++++++|+.-...|+..+..+
T Consensus 41 ~~~~l~~l~~I~~lr~~G~-sl~eI~~~l~~~~~~~~~~~~~~~~~l~~~~~~l~~~i~~L~~~~~~L~~~~~~~ 114 (131)
T TIGR02043 41 TDEDQKRLRFILKAKELGF-TLDEIKELLSIKLDATEHSCAEVKAIVDAKLELVDEKINELTKIRRSLKKLSDAC 114 (131)
T ss_pred CHHHHHHHHHHHHHHHcCC-CHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33455555533 688888 88777765543212111112222 2245566777777777777777776666655
No 118
>PF10392 COG5: Golgi transport complex subunit 5; InterPro: IPR019465 The conserved oligomeric Golgi (COG) complex is a peripheral membrane complex involved in intra-Golgi protein trafficking. Subunit 5 is located in the smaller, B lobe, together with subunits 6-8, and has been shown to bind subunits 1 and 7 [].
Probab=39.17 E-value=2.8e+02 Score=25.83 Aligned_cols=56 Identities=20% Similarity=0.389 Sum_probs=40.4
Q ss_pred hhhhhHHHHHHHHHHHHHhhhhhHHH----HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007566 270 DLGILSIETLKRELMEANESRDAALM----EVSEMRSSFGELRQKLEYLEAYCEELKKALRQA 328 (598)
Q Consensus 270 t~~i~sie~L~~kL~~a~~~RDaa~~----Ei~~lk~sl~eL~~KL~~Le~~~~~Lkk~L~q~ 328 (598)
+|+| +++.+++...+..+...|. -+.++...+..++..++.|..-..+|++++-+-
T Consensus 39 ~~~i---~eld~~i~~~v~~~~~~LL~q~~~~~~~~~~l~~v~~~v~~L~~s~~RL~~eV~~P 98 (132)
T PF10392_consen 39 NFDI---QELDKRIRSQVTSNHEDLLSQASSIEELESVLQAVRSSVESLQSSYERLRSEVIEP 98 (132)
T ss_pred HHHH---HHHHHHHHHHHHhCHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH
Confidence 4555 6777888888877777763 455666777788888888888888877777543
No 119
>PF12709 Kinetocho_Slk19: Central kinetochore-associated; InterPro: IPR024312 This is a family of proteins integrally involved in the central kinetochore. Slk19 is a yeast member and it may play an important role in the timing of nuclear migration. It may also participate, directly or indirectly, in the maintenance of centromeric tensile strength during mitotic stagnation, for instance during activation of checkpoint controls, when cells need to preserve nuclear integrity until cell cycle progression can be resumed [].
Probab=38.56 E-value=1.8e+02 Score=26.31 Aligned_cols=52 Identities=27% Similarity=0.367 Sum_probs=35.1
Q ss_pred HHHHHHHHHHHHHhhhhhHHHHHHHH--------HhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007566 275 SIETLKRELMEANESRDAALMEVSEM--------RSSFGELRQKLEYLEAYCEELKKALRQA 328 (598)
Q Consensus 275 sie~L~~kL~~a~~~RDaa~~Ei~~l--------k~sl~eL~~KL~~Le~~~~~Lkk~L~q~ 328 (598)
.++.+.++|=...-.++.- =|..| ..-+.+|+.++..|...|..|+.+|+-.
T Consensus 16 ~ve~vA~eLh~~YssKHE~--KV~~LKksYe~rwek~v~~L~~e~~~l~~E~e~L~~~l~~e 75 (87)
T PF12709_consen 16 AVEKVARELHALYSSKHET--KVKALKKSYEARWEKKVDELENENKALKRENEQLKKKLDTE 75 (87)
T ss_pred HHHHHHHHHHHHHhhHHHH--HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555666666555554442 23333 3567888899999999999999988754
No 120
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=38.50 E-value=48 Score=35.57 Aligned_cols=11 Identities=9% Similarity=-0.091 Sum_probs=6.4
Q ss_pred HhcCCCHHHHh
Q 007566 394 EETDHTLMDNL 404 (598)
Q Consensus 394 r~AgwDL~aAa 404 (598)
+.+||.+..+.
T Consensus 285 ~l~g~~~~~~~ 295 (312)
T smart00787 285 SLTGWKITKLS 295 (312)
T ss_pred HHhCCeeEecc
Confidence 34588765543
No 121
>cd04784 HTH_CadR-PbrR Helix-Turn-Helix DNA binding domain of the CadR and PbrR transcription regulators. Helix-turn-helix (HTH) CadR and PbrR transcription regulators including Pseudomonas aeruginosa CadR and Ralstonia metallidurans PbrR that regulate expression of the cadmium and lead resistance operons, respectively. These proteins are comprised of distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their conserved N-terminal domains contain predicted winged HTH motifs that mediate DNA binding, while the C-terminal domains have three conserved cysteines which form a putative metal binding site. Some members in this group have a histidine-rich C-terminal extension. These proteins share the N-terminal DNA binding domain with other transcription regulators of the MerR superfamily that promote transcription by reconfiguring the spacer between the -35 and -10 promoter elements.
Probab=38.39 E-value=2e+02 Score=26.28 Aligned_cols=72 Identities=15% Similarity=0.265 Sum_probs=40.9
Q ss_pred CCCccchhHHHHH--HHhhhhhHHHHHHHHHHHHHhhhhhHHHHH-HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007566 255 SPNRTESEEVSQV--FKDLGILSIETLKRELMEANESRDAALMEV-SEMRSSFGELRQKLEYLEAYCEELKKALRQA 328 (598)
Q Consensus 255 s~~~ae~eE~q~l--lkt~~i~sie~L~~kL~~a~~~RDaa~~Ei-~~lk~sl~eL~~KL~~Le~~~~~Lkk~L~q~ 328 (598)
-.....++....+ ||.+|+ ++++++.=|... ...+..+.++ .-++..+.+|++++++|+.-...|+..+..+
T Consensus 38 ~Y~~~~l~~l~~I~~lr~~G~-sL~eI~~~l~~~-~~~~~~~~~~~~~l~~~~~~l~~~i~~L~~~~~~L~~~~~~~ 112 (127)
T cd04784 38 LYDEEHLERLLFIRRCRSLDM-SLDEIRTLLQLQ-DDPEASCAEVNALIDEHLAHVRARIAELQALEKQLQALRERC 112 (127)
T ss_pred ecCHHHHHHHHHHHHHHHcCC-CHHHHHHHHHhh-hcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 3344455555533 788997 888877655422 2112111222 2245556677777777777777776666655
No 122
>PRK09514 zntR zinc-responsive transcriptional regulator; Provisional
Probab=38.17 E-value=1.5e+02 Score=27.91 Aligned_cols=71 Identities=15% Similarity=0.222 Sum_probs=39.0
Q ss_pred CccchhHHHH--HHHhhhhhHHHHHHHHHHHHHhhhhhHHHHHH-HHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007566 257 NRTESEEVSQ--VFKDLGILSIETLKRELMEANESRDAALMEVS-EMRSSFGELRQKLEYLEAYCEELKKALRQA 328 (598)
Q Consensus 257 ~~ae~eE~q~--llkt~~i~sie~L~~kL~~a~~~RDaa~~Ei~-~lk~sl~eL~~KL~~Le~~~~~Lkk~L~q~ 328 (598)
....++.... .||..|+ ++++++.-|......-+..+.++. -+...+.+|++++++|+.-...|+..+..+
T Consensus 41 ~~~~l~~l~~I~~lr~~G~-sL~eI~~~l~~~~~~~~~~~~~~~~~l~~~~~~l~~~i~~L~~~~~~L~~~~~~~ 114 (140)
T PRK09514 41 TEQDLQRLRFIRRAKQLGF-TLEEIRELLSIRLDPEHHTCQEVKGIVDEKLAEVEAKIAELQHMRRSLQRLNDAC 114 (140)
T ss_pred CHHHHHHHHHHHHHHHcCC-CHHHHHHHHHhcccCCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3344544443 3678888 888877665422111111122222 245556677777777777666666666555
No 123
>KOG4571 consensus Activating transcription factor 4 [Transcription]
Probab=37.99 E-value=68 Score=34.51 Aligned_cols=37 Identities=32% Similarity=0.282 Sum_probs=26.8
Q ss_pred HHHhhhhhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007566 285 EANESRDAALMEVSEMRSSFGELRQKLEYLEAYCEELKKALRQA 328 (598)
Q Consensus 285 ~a~~~RDaa~~Ei~~lk~sl~eL~~KL~~Le~~~~~Lkk~L~q~ 328 (598)
+|+|=|+.- |+....|.-+|+.|+.+|.+||.++.+.
T Consensus 238 AAtRYRqKk-------Rae~E~l~ge~~~Le~rN~~LK~qa~~l 274 (294)
T KOG4571|consen 238 AATRYRQKK-------RAEKEALLGELEGLEKRNEELKDQASEL 274 (294)
T ss_pred HHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566655553 2334477779999999999999988776
No 124
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=37.98 E-value=2.4e+02 Score=25.16 Aligned_cols=48 Identities=21% Similarity=0.237 Sum_probs=20.0
Q ss_pred HHHHHHHHHhhhhhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Q 007566 279 LKRELMEANESRDAALMEVSEMRSSFGELRQKLEYLEAYCEELKKALR 326 (598)
Q Consensus 279 L~~kL~~a~~~RDaa~~Ei~~lk~sl~eL~~KL~~Le~~~~~Lkk~L~ 326 (598)
|+.|+++--++...-.+|+..++++=.+|+++.+.|...-..-..+|+
T Consensus 23 LqmEieELKekn~~L~~e~~~~~~~r~~L~~en~qLk~E~~~WqerLr 70 (79)
T PRK15422 23 LQMEIEELKEKNNSLSQEVQNAQHQREELERENNHLKEQQNGWQERLQ 70 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444333333333334444444444444444444444444444443
No 125
>PF03980 Nnf1: Nnf1 ; InterPro: IPR007128 NNF1 is an essential yeast gene required for proper spindle orientation, nucleolar and nuclear envelope structure and mRNA export [].
Probab=37.66 E-value=2.1e+02 Score=25.54 Aligned_cols=29 Identities=21% Similarity=0.305 Sum_probs=24.7
Q ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007566 300 MRSSFGELRQKLEYLEAYCEELKKALRQA 328 (598)
Q Consensus 300 lk~sl~eL~~KL~~Le~~~~~Lkk~L~q~ 328 (598)
.+..+..|+..|+.++..|..|.+.|.+.
T Consensus 78 ~~~~~~~L~~~l~~l~~eN~~L~~~i~~~ 106 (109)
T PF03980_consen 78 KKKEREQLNARLQELEEENEALAEEIQEQ 106 (109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45667899999999999999999998754
No 126
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=37.28 E-value=1.3e+02 Score=28.23 Aligned_cols=44 Identities=18% Similarity=0.296 Sum_probs=21.8
Q ss_pred HHHHHHHhhhhhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 007566 281 RELMEANESRDAALMEVSEMRSSFGELRQKLEYLEAYCEELKKALRQ 327 (598)
Q Consensus 281 ~kL~~a~~~RDaa~~Ei~~lk~sl~eL~~KL~~Le~~~~~Lkk~L~q 327 (598)
..|...++..++ |+.++...+..|+.+++.++..+..++.+..+
T Consensus 55 e~l~~~~~~l~~---d~~~l~~~~~rL~~~~~~~ere~~~~~~~~~~ 98 (151)
T PF11559_consen 55 EDLSDKLRRLRS---DIERLQNDVERLKEQLEELERELASAEEKERQ 98 (151)
T ss_pred HHHHHHHHHHHh---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444 35555555555555555555555544444443
No 127
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=37.27 E-value=1.2e+02 Score=32.75 Aligned_cols=34 Identities=29% Similarity=0.397 Sum_probs=31.5
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007566 295 MEVSEMRSSFGELRQKLEYLEAYCEELKKALRQA 328 (598)
Q Consensus 295 ~Ei~~lk~sl~eL~~KL~~Le~~~~~Lkk~L~q~ 328 (598)
+||.+|.+.+.+|++++..+-..+.+|...|...
T Consensus 234 EEIt~LlsqivdlQ~r~k~~~~EnEeL~q~L~~s 267 (306)
T PF04849_consen 234 EEITSLLSQIVDLQQRCKQLAAENEELQQHLQAS 267 (306)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 4899999999999999999999999999999776
No 128
>PF11853 DUF3373: Protein of unknown function (DUF3373); InterPro: IPR021803 This family of proteins are functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 472 to 574 amino acids in length.
Probab=37.24 E-value=37 Score=38.70 Aligned_cols=32 Identities=19% Similarity=0.412 Sum_probs=22.3
Q ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007566 296 EVSEMRSSFGELRQKLEYLEAYCEELKKALRQA 328 (598)
Q Consensus 296 Ei~~lk~sl~eL~~KL~~Le~~~~~Lkk~L~q~ 328 (598)
|+..|| .|++|++||++|++...+|.++++..
T Consensus 26 ~~~~~q-kie~L~kql~~Lk~q~~~l~~~v~k~ 57 (489)
T PF11853_consen 26 DIDLLQ-KIEALKKQLEELKAQQDDLNDRVDKV 57 (489)
T ss_pred hhHHHH-HHHHHHHHHHHHHHhhcccccccchh
Confidence 455455 67777788888777777777777553
No 129
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=37.14 E-value=62 Score=31.00 Aligned_cols=33 Identities=27% Similarity=0.415 Sum_probs=24.0
Q ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007566 296 EVSEMRSSFGELRQKLEYLEAYCEELKKALRQA 328 (598)
Q Consensus 296 Ei~~lk~sl~eL~~KL~~Le~~~~~Lkk~L~q~ 328 (598)
|+..|...+.+|+++|..|+..+..|+..|...
T Consensus 73 el~~ld~ei~~L~~el~~l~~~~k~l~~eL~~L 105 (169)
T PF07106_consen 73 ELAELDAEIKELREELAELKKEVKSLEAELASL 105 (169)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566666667777778888888887777777654
No 130
>KOG1853 consensus LIS1-interacting protein NUDE [Cytoskeleton]
Probab=36.99 E-value=2.6e+02 Score=30.05 Aligned_cols=23 Identities=30% Similarity=0.421 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 007566 306 ELRQKLEYLEAYCEELKKALRQA 328 (598)
Q Consensus 306 eL~~KL~~Le~~~~~Lkk~L~q~ 328 (598)
.|+..|..+.+-|..|.|.+++.
T Consensus 95 ~Leddlsqt~aikeql~kyiReL 117 (333)
T KOG1853|consen 95 QLEDDLSQTHAIKEQLRKYIREL 117 (333)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444445555555555555554
No 131
>COG5570 Uncharacterized small protein [Function unknown]
Probab=36.85 E-value=66 Score=26.84 Aligned_cols=49 Identities=22% Similarity=0.203 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHHHhhhhhHHH-HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 007566 275 SIETLKRELMEANESRDAALM-EVSEMRSSFGELRQKLEYLEAYCEELKKALRQ 327 (598)
Q Consensus 275 sie~L~~kL~~a~~~RDaa~~-Ei~~lk~sl~eL~~KL~~Le~~~~~Lkk~L~q 327 (598)
+||.-..+|+ +|...|+ ||.+...+=+.=...|.+|.++.-.||..++.
T Consensus 2 aieshl~eL~----kkHg~le~ei~ea~n~Ps~dd~~i~eLKRrKL~lKeeIEk 51 (57)
T COG5570 2 AIESHLAELE----KKHGNLEREIQEAMNSPSSDDLAIRELKRRKLRLKEEIEK 51 (57)
T ss_pred cHHHHHHHHH----HhhchHHHHHHHHhcCCCcchHHHHHHHHHHHHHHHHHHH
Confidence 4444444444 6666654 55554443333334566666666666666654
No 132
>PF00170 bZIP_1: bZIP transcription factor cAMP response element binding (CREB) protein signature fos transforming protein signature jun transcription factor signature; InterPro: IPR011616 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotic are proteins that contain a basic region mediating sequence-specific DNA-binding followed by a leucine zipper region (see IPR002158 from INTERPRO) required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2H7H_B 2OQQ_B 1S9K_E 1JNM_A 1JUN_A 1FOS_H 1A02_J 1T2K_C 1CI6_A 1DH3_C ....
Probab=36.64 E-value=1.5e+02 Score=24.07 Aligned_cols=32 Identities=28% Similarity=0.367 Sum_probs=18.4
Q ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 007566 296 EVSEMRSSFGELRQKLEYLEAYCEELKKALRQ 327 (598)
Q Consensus 296 Ei~~lk~sl~eL~~KL~~Le~~~~~Lkk~L~q 327 (598)
.+.+|...+..|..+...|...+..|+..+..
T Consensus 27 ~~~~Le~~~~~L~~en~~L~~~~~~L~~~~~~ 58 (64)
T PF00170_consen 27 YIEELEEKVEELESENEELKKELEQLKKEIQS 58 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555555556666666666666665555544
No 133
>PRK14156 heat shock protein GrpE; Provisional
Probab=36.41 E-value=45 Score=33.25 Aligned_cols=40 Identities=18% Similarity=0.326 Sum_probs=30.0
Q ss_pred ccchhhhhhhcccc-ccCCCCCeEEEEeeCCceeCCeEEEe
Q 007566 549 SFDAHYMEDMLMDR-QKSHGSSRVKIMVMPGFYVQDKVLRC 588 (598)
Q Consensus 549 ~Fs~vYMEsVv~~~-~~~~~~~~VgftV~PGFkVg~tVIKc 588 (598)
.|||.+.|-|.... +....+..|.=.+-+|+++|+.||+.
T Consensus 130 ~FDP~~HEAv~~~~~~~~~~~gtVv~V~qkGY~l~dRVLRp 170 (177)
T PRK14156 130 SFDHNLHMAVQTLPADDEHPADSIAQVFQKGYKLHERLLRP 170 (177)
T ss_pred CCChhHhhcceeecCCCCCCcCEEEEEeeCCcEeCCEEeec
Confidence 79999999985432 22233456777889999999999984
No 134
>KOG4001 consensus Axonemal dynein light chain [Cytoskeleton]
Probab=36.41 E-value=1.2e+02 Score=31.47 Aligned_cols=46 Identities=28% Similarity=0.489 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHHHhhhhhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Q 007566 275 SIETLKRELMEANESRDAALMEVSEMRSSFGELRQKLEYLEAYCEELKKALR 326 (598)
Q Consensus 275 sie~L~~kL~~a~~~RDaa~~Ei~~lk~sl~eL~~KL~~Le~~~~~Lkk~L~ 326 (598)
-|++++.|++ +.+.|.++..|+.+- ...++++-|..-|.-||.+|.
T Consensus 207 ~ia~~k~K~e-~~e~r~~E~r~ieEk-----k~~eei~fLk~tN~qLKaQLe 252 (259)
T KOG4001|consen 207 KIAQLKKKLE-TDEIRSEEEREIEEK-----KMKEEIEFLKETNRQLKAQLE 252 (259)
T ss_pred HHHHHHHHHH-HHHhhhHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHh
Confidence 3444555554 333444443333322 223444455555555555543
No 135
>PRK13752 putative transcriptional regulator MerR; Provisional
Probab=36.31 E-value=1.4e+02 Score=28.35 Aligned_cols=71 Identities=17% Similarity=0.197 Sum_probs=43.9
Q ss_pred CCCCccchhHHHHH--HHhhhhhHHHHHHHHHHHHHhhhhhHHHH-HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007566 254 NSPNRTESEEVSQV--FKDLGILSIETLKRELMEANESRDAALME-VSEMRSSFGELRQKLEYLEAYCEELKKALRQA 328 (598)
Q Consensus 254 ~s~~~ae~eE~q~l--lkt~~i~sie~L~~kL~~a~~~RDaa~~E-i~~lk~sl~eL~~KL~~Le~~~~~Lkk~L~q~ 328 (598)
.-.....++..+-+ +|..|+ ++++++.=|.. ....+ +.+ ..-++..+.++++++++|+.-...|+..+..+
T Consensus 44 R~Y~~~~l~rl~~I~~lr~~G~-sL~eI~~ll~~-~~~~~--~~~~~~ll~~k~~~l~~~i~~L~~~~~~L~~~~~~~ 117 (144)
T PRK13752 44 RRYGEADVTRVRFVKSAQRLGF-SLDEIAELLRL-EDGTH--CEEASSLAEHKLKDVREKMADLARMEAVLSELVCAC 117 (144)
T ss_pred eecCHHHHHHHHHHHHHHHcCC-CHHHHHHHHhc-cCCCC--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 33444566666644 788897 99888765532 11111 111 22345567788888888888888888777666
No 136
>PRK04325 hypothetical protein; Provisional
Probab=35.96 E-value=2.2e+02 Score=24.51 Aligned_cols=45 Identities=20% Similarity=0.259 Sum_probs=32.8
Q ss_pred HHHHHHHhhhhhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007566 281 RELMEANESRDAALMEVSEMRSSFGELRQKLEYLEAYCEELKKALRQA 328 (598)
Q Consensus 281 ~kL~~a~~~RDaa~~Ei~~lk~sl~eL~~KL~~Le~~~~~Lkk~L~q~ 328 (598)
-+|+..+..-+.. |.+|-..+.+.+++|+.|+..+..|..+|++.
T Consensus 12 ~~LE~klAfQE~t---Ie~LN~vv~~Qq~~I~~L~~ql~~L~~rl~~~ 56 (74)
T PRK04325 12 TELEIQLAFQEDL---IDGLNATVARQQQTLDLLQAQLRLLYQQMRDA 56 (74)
T ss_pred HHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3444444455555 55566778888899999999999999999876
No 137
>PRK09413 IS2 repressor TnpA; Reviewed
Probab=35.85 E-value=69 Score=29.21 Aligned_cols=29 Identities=24% Similarity=0.141 Sum_probs=24.0
Q ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 007566 299 EMRSSFGELRQKLEYLEAYCEELKKALRQ 327 (598)
Q Consensus 299 ~lk~sl~eL~~KL~~Le~~~~~Lkk~L~q 327 (598)
+++..+.+|++++.+|+.+++-|||.+.-
T Consensus 75 ~~~~ei~~L~~el~~L~~E~diLKKa~~~ 103 (121)
T PRK09413 75 AAMKQIKELQRLLGKKTMENELLKEAVEY 103 (121)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555779999999999999999998854
No 138
>PRK02119 hypothetical protein; Provisional
Probab=35.45 E-value=2.4e+02 Score=24.32 Aligned_cols=45 Identities=11% Similarity=0.140 Sum_probs=32.9
Q ss_pred HHHHHHHhhhhhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007566 281 RELMEANESRDAALMEVSEMRSSFGELRQKLEYLEAYCEELKKALRQA 328 (598)
Q Consensus 281 ~kL~~a~~~RDaa~~Ei~~lk~sl~eL~~KL~~Le~~~~~Lkk~L~q~ 328 (598)
-+|+..+..-+.. |.+|-..+.+.+++|+.|+..+..|..+|++.
T Consensus 12 ~~LE~rla~QE~t---ie~LN~~v~~Qq~~id~L~~ql~~L~~rl~~~ 56 (73)
T PRK02119 12 AELEMKIAFQENL---LEELNQALIEQQFVIDKMQVQLRYMANKLKDM 56 (73)
T ss_pred HHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4455444455555 44566778888889999999999999999875
No 139
>cd04776 HTH_GnyR Helix-Turn-Helix DNA binding domain of the regulatory protein GnyR. Putative helix-turn-helix (HTH) regulatory protein, GnyR, and other related proteins. GnyR belongs to the gnyRDBHAL cluster, which is involved in acyclic isoprenoid degradation in Pseudomonas aeruginosa. These proteins share the N-terminal DNA binding domain with other transcription regulators of the MerR superfamily that promote transcription by reconfiguring the spacer between the -35 and -10 promoter elements. A typical MerR regulator is comprised of distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their conserved N-terminal domains contain predicted winged HTH motifs that mediate DNA binding, while the dissimilar C-terminal domains bind specific coactivator molecules.
Probab=35.44 E-value=1.2e+02 Score=27.77 Aligned_cols=69 Identities=20% Similarity=0.227 Sum_probs=33.6
Q ss_pred cchhHHHH--HHHhhhhhHHHHHHHHHHHHHhhhhh--HHHH-HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007566 259 TESEEVSQ--VFKDLGILSIETLKRELMEANESRDA--ALME-VSEMRSSFGELRQKLEYLEAYCEELKKALRQA 328 (598)
Q Consensus 259 ae~eE~q~--llkt~~i~sie~L~~kL~~a~~~RDa--a~~E-i~~lk~sl~eL~~KL~~Le~~~~~Lkk~L~q~ 328 (598)
..++..+. .||..|. +++++++=|......... .+.| +..+...+..|++++++|+.....|+..+..+
T Consensus 40 ~~l~~l~~I~~lr~~G~-~L~~I~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~l~~~~~~L~~~~~~~ 113 (118)
T cd04776 40 RDRARLKLILRGKRLGF-SLEEIRELLDLYDPPGGNRKQLEKMLEKIEKRRAELEQQRRDIDAALAELDAAEERC 113 (118)
T ss_pred HHHHHHHHHHHHHHCCC-CHHHHHHHHHhhccCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555553 3678888 887777666533222111 1111 12234444455555555555555555544443
No 140
>PF03670 UPF0184: Uncharacterised protein family (UPF0184); InterPro: IPR022788 This family of proteins has no known function.
Probab=35.44 E-value=84 Score=28.15 Aligned_cols=39 Identities=21% Similarity=0.284 Sum_probs=30.9
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhccC
Q 007566 295 MEVSEMRSSFGELRQKLEYLEAYCEELKKALRQAATHAK 333 (598)
Q Consensus 295 ~Ei~~lk~sl~eL~~KL~~Le~~~~~Lkk~L~q~~~~~k 333 (598)
+|+..+-+.|+.|.-=|+.||+++..|..+|++--.+++
T Consensus 26 ~E~~~ins~LD~Lns~LD~LE~rnD~l~~~L~~LLesnr 64 (83)
T PF03670_consen 26 EEYAAINSMLDQLNSCLDHLEQRNDHLHAQLQELLESNR 64 (83)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 367777788888889999999999999999988733333
No 141
>PF10046 BLOC1_2: Biogenesis of lysosome-related organelles complex-1 subunit 2 ; InterPro: IPR019269 This entry represents a family of proteins that play a role in cellular proliferation, as well as in the biogenesis of specialised organelles of the endosomal-lysosomal system [].
Probab=34.55 E-value=2.2e+02 Score=25.40 Aligned_cols=31 Identities=23% Similarity=0.490 Sum_probs=20.6
Q ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Q 007566 296 EVSEMRSSFGELRQKLEYLEAYCEELKKALR 326 (598)
Q Consensus 296 Ei~~lk~sl~eL~~KL~~Le~~~~~Lkk~L~ 326 (598)
.|.++-.++..|++--..|..|+.+|+.+++
T Consensus 67 ~Id~Ie~~V~~LE~~v~~LD~ysk~LE~k~k 97 (99)
T PF10046_consen 67 QIDQIEEQVTELEQTVYELDEYSKELESKFK 97 (99)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4555555666666667777777777777765
No 142
>PF05633 DUF793: Protein of unknown function (DUF793); InterPro: IPR008511 This entry includes Protein BYPASS 1 which is required for normal root and shoot development. Prevents constitutive production of a root mobile carotenoid-derived signaling compound that is capable of arresting shoot and leaf development [, ].
Probab=34.50 E-value=89 Score=34.85 Aligned_cols=22 Identities=36% Similarity=0.623 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 007566 306 ELRQKLEYLEAYCEELKKALRQ 327 (598)
Q Consensus 306 eL~~KL~~Le~~~~~Lkk~L~q 327 (598)
++++..++|...|..|+.+|+-
T Consensus 345 ev~~~V~EL~~~~~~L~~GLdp 366 (389)
T PF05633_consen 345 EVREAVEELARVCEALSQGLDP 366 (389)
T ss_pred HHHHHHHHHHHHHHHHHcccHH
Confidence 4455555566666666655553
No 143
>PRK10869 recombination and repair protein; Provisional
Probab=34.22 E-value=1.2e+02 Score=34.72 Aligned_cols=19 Identities=11% Similarity=0.195 Sum_probs=11.7
Q ss_pred HHHHHHHHHHHHHHHhcCC
Q 007566 380 LSVKQFCKTLVAQIEETDH 398 (598)
Q Consensus 380 kSIr~FaKlLI~~Mr~Agw 398 (598)
++...|.+.+..+|+.-|-
T Consensus 370 ~aA~~l~~~v~~~L~~L~m 388 (553)
T PRK10869 370 RYAKELAQLITESMHELSM 388 (553)
T ss_pred HHHHHHHHHHHHHHHHcCC
Confidence 3556677777777764443
No 144
>PF08654 DASH_Dad2: DASH complex subunit Dad2; InterPro: IPR013963 The DASH complex is a ~10 subunit microtubule-binding complex that is transferred to the kinetochore prior to mitosis []. In Saccharomyces cerevisiae (Baker's yeast) DASH forms both rings and spiral structures on microtubules in vitro [, ].
Probab=33.92 E-value=1e+02 Score=28.24 Aligned_cols=41 Identities=22% Similarity=0.285 Sum_probs=26.3
Q ss_pred HHHHHhhhhhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Q 007566 283 LMEANESRDAALMEVSEMRSSFGELRQKLEYLEAYCEELKK 323 (598)
Q Consensus 283 L~~a~~~RDaa~~Ei~~lk~sl~eL~~KL~~Le~~~~~Lkk 323 (598)
|++.+..|.++|+-+.+++..=+.|..+|+.|..++..|..
T Consensus 2 l~~ri~eKk~ELe~L~~l~~lS~~L~~qle~L~~kl~~m~d 42 (103)
T PF08654_consen 2 LQARIAEKKAELEALKQLRDLSADLASQLEALSEKLETMAD 42 (103)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34555577777776666666666666777766666555544
No 145
>cd00632 Prefoldin_beta Prefoldin beta; Prefoldin is a hexameric molecular chaperone complex, composed of two evolutionarily related subunits (alpha and beta), which are found in both eukaryotes and archaea. Prefoldin binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The hexameric structure consists of a double beta barrel assembly with six protruding coiled-coils. The alpha prefoldin subunits have two beta hairpin structures while the beta prefoldin subunits (this CD) have only one hairpin that is most similar to the second hairpin of the alpha subunit. The prefoldin hexamer consists of two alpha and four beta subunits and is assembled from the beta hairpins of all six subunits. The alpha subunits initially dimerize providing a structural nucleus for the assembly of the beta subunits. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the st
Probab=33.69 E-value=1.6e+02 Score=26.25 Aligned_cols=48 Identities=21% Similarity=0.228 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHHHhhhhhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007566 275 SIETLKRELMEANESRDAALMEVSEMRSSFGELRQKLEYLEAYCEELKKALRQA 328 (598)
Q Consensus 275 sie~L~~kL~~a~~~RDaa~~Ei~~lk~sl~eL~~KL~~Le~~~~~Lkk~L~q~ 328 (598)
-++.-+.++...+..|-..+ ...+..|..++.+++....+|+.+|++.
T Consensus 56 fv~~~~~ea~~~Le~~~e~l------e~~i~~l~~~~~~l~~~~~elk~~l~~~ 103 (105)
T cd00632 56 LVKQEKEEARTELKERLETI------ELRIKRLERQEEDLQEKLKELQEKIQQA 103 (105)
T ss_pred HhhccHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444455555555555543 3345567777777777777777777664
No 146
>PF05266 DUF724: Protein of unknown function (DUF724); InterPro: IPR007930 This family contains several uncharacterised proteins found exclusively in Arabidopsis thaliana.
Probab=33.26 E-value=1.8e+02 Score=29.31 Aligned_cols=16 Identities=25% Similarity=0.428 Sum_probs=6.8
Q ss_pred HHHHHHHHHHHHHHHH
Q 007566 311 LEYLEAYCEELKKALR 326 (598)
Q Consensus 311 L~~Le~~~~~Lkk~L~ 326 (598)
+.+++.++..|+..+.
T Consensus 161 i~~lks~~~~l~~~~~ 176 (190)
T PF05266_consen 161 ISRLKSEAEALKEEIE 176 (190)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3444444444444443
No 147
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=32.93 E-value=3e+02 Score=29.42 Aligned_cols=34 Identities=21% Similarity=0.296 Sum_probs=19.0
Q ss_pred HHHHHHHH--HHHHHHHHHHHHHHHHHhcCCCHHHH
Q 007566 370 GFLQIVSE--ARLSVKQFCKTLVAQIEETDHTLMDN 403 (598)
Q Consensus 370 ~Fl~~l~~--ArkSIr~FaKlLI~~Mr~AgwDL~aA 403 (598)
-|-.++.. |...|-++=|-|+...+.-.-+|...
T Consensus 128 SfsD~IsRvtAi~~iv~aDk~ile~qk~dk~~Le~k 163 (265)
T COG3883 128 SFSDLISRVTAISVIVDADKKILEQQKEDKKSLEEK 163 (265)
T ss_pred cHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 44444432 45666677777777766554444433
No 148
>PF06120 Phage_HK97_TLTM: Tail length tape measure protein; InterPro: IPR009302 This entry consists of the tail length tape measure protein from Bacteriophage HK97 and related sequences from Escherichia coli (strain K12).
Probab=32.89 E-value=1.2e+02 Score=32.86 Aligned_cols=52 Identities=21% Similarity=0.399 Sum_probs=37.6
Q ss_pred hhhhhHHHHHHHHHHH--HHhhhhhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Q 007566 270 DLGILSIETLKRELME--ANESRDAALMEVSEMRSSFGELRQKLEYLEAYCEELKKALR 326 (598)
Q Consensus 270 t~~i~sie~L~~kL~~--a~~~RDaa~~Ei~~lk~sl~eL~~KL~~Le~~~~~Lkk~L~ 326 (598)
.|-= +++++..||.+ .++-|+. |..++.+|.++.++|++++.....|+.+|+
T Consensus 52 ~fA~-~ld~~~~kl~~Ms~~ql~~~----~~k~~~si~~q~~~i~~l~~~i~~l~~~i~ 105 (301)
T PF06120_consen 52 EFAD-SLDELKEKLKEMSSTQLRAN----IAKAEESIAAQKRAIEDLQKKIDSLKDQIK 105 (301)
T ss_pred HHHH-hhHHHHHHHHhcCHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4433 45666777653 3444444 778888888888999999999888888885
No 149
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=32.36 E-value=1.4e+02 Score=35.51 Aligned_cols=14 Identities=36% Similarity=0.413 Sum_probs=10.1
Q ss_pred HHHHHHHHHHHHHH
Q 007566 28 RQEIQAAIAKAVEL 41 (598)
Q Consensus 28 r~~~~~a~a~~~~l 41 (598)
|+-.|..|+|.=|.
T Consensus 179 ~~r~q~~v~~~n~~ 192 (697)
T PF09726_consen 179 RQRKQREVQKENEF 192 (697)
T ss_pred HHHHHHHHHHHHHH
Confidence 67778888877653
No 150
>PF07889 DUF1664: Protein of unknown function (DUF1664); InterPro: IPR012458 The members of this family are hypothetical plant proteins of unknown function. The region featured in this family is approximately 100 amino acids long.
Probab=32.34 E-value=2.2e+02 Score=27.14 Aligned_cols=53 Identities=19% Similarity=0.354 Sum_probs=35.8
Q ss_pred HHHHHHHHHHHHhhhhhHH-----------HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007566 276 IETLKRELMEANESRDAAL-----------MEVSEMRSSFGELRQKLEYLEAYCEELKKALRQA 328 (598)
Q Consensus 276 ie~L~~kL~~a~~~RDaa~-----------~Ei~~lk~sl~eL~~KL~~Le~~~~~Lkk~L~q~ 328 (598)
++..+++|.+.++.=|.-+ +|+.+++.-++..+.+++.++.-...|+-+|.+-
T Consensus 59 l~~tKkhLsqRId~vd~klDe~~ei~~~i~~eV~~v~~dv~~i~~dv~~v~~~V~~Le~ki~~i 122 (126)
T PF07889_consen 59 LSSTKKHLSQRIDRVDDKLDEQKEISKQIKDEVTEVREDVSQIGDDVDSVQQMVEGLEGKIDEI 122 (126)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456666665555444433 2566677777788888888888888888888654
No 151
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=32.16 E-value=7.5e+02 Score=28.81 Aligned_cols=19 Identities=11% Similarity=0.202 Sum_probs=10.1
Q ss_pred eeEEecCCCccchhhhhhh
Q 007566 540 GILRVEDNRSFDAHYMEDM 558 (598)
Q Consensus 540 sIFrV~rG~~Fs~vYMEsV 558 (598)
.|+-+....+++..|.+-+
T Consensus 606 QvIils~d~e~~~~~~~~l 624 (650)
T TIGR03185 606 QVLLLSTDEEVDEKHYNLL 624 (650)
T ss_pred eEEEEechHhhCHHHHHHH
Confidence 3444446666666555444
No 152
>PF10224 DUF2205: Predicted coiled-coil protein (DUF2205); InterPro: IPR019357 This entry represents a highly conserved 100 residue region which is likely to have a coiled-coil structure. The exact function is unknown.
Probab=31.64 E-value=1.3e+02 Score=26.75 Aligned_cols=27 Identities=26% Similarity=0.433 Sum_probs=13.5
Q ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHH
Q 007566 296 EVSEMRSSFGELRQKLEYLEAYCEELK 322 (598)
Q Consensus 296 Ei~~lk~sl~eL~~KL~~Le~~~~~Lk 322 (598)
||..|+.+|..|-..++..+..|..|+
T Consensus 24 ei~~LQ~sL~~L~~Rve~Vk~E~~kL~ 50 (80)
T PF10224_consen 24 EILELQDSLEALSDRVEEVKEENEKLE 50 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555555555555554444444443
No 153
>PRK04406 hypothetical protein; Provisional
Probab=31.42 E-value=2.8e+02 Score=24.07 Aligned_cols=45 Identities=4% Similarity=0.123 Sum_probs=32.8
Q ss_pred HHHHHHHhhhhhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007566 281 RELMEANESRDAALMEVSEMRSSFGELRQKLEYLEAYCEELKKALRQA 328 (598)
Q Consensus 281 ~kL~~a~~~RDaa~~Ei~~lk~sl~eL~~KL~~Le~~~~~Lkk~L~q~ 328 (598)
-+|+..+..-+.. |.+|-..+.+.+++|+.|+..+..|..+|++.
T Consensus 14 ~~LE~~lAfQE~t---Ie~LN~~v~~Qq~~I~~L~~ql~~L~~rl~~~ 58 (75)
T PRK04406 14 NDLECQLAFQEQT---IEELNDALSQQQLLITKMQDQMKYVVGKVKNM 58 (75)
T ss_pred HHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4455444455555 55566778888889999999999999988765
No 154
>KOG2264 consensus Exostosin EXT1L [Signal transduction mechanisms]
Probab=31.17 E-value=85 Score=36.94 Aligned_cols=47 Identities=17% Similarity=0.256 Sum_probs=29.4
Q ss_pred HHHHHHHHHhhhhhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007566 279 LKRELMEANESRDAALMEVSEMRSSFGELRQKLEYLEAYCEELKKALRQA 328 (598)
Q Consensus 279 L~~kL~~a~~~RDaa~~Ei~~lk~sl~eL~~KL~~Le~~~~~Lkk~L~q~ 328 (598)
-.+||.+++++=.-. |+++|.+|..-+.+|..|+...+.-+.++++.
T Consensus 101 krqel~seI~~~n~k---iEelk~~i~~~q~eL~~Lk~~ieqaq~~~~El 147 (907)
T KOG2264|consen 101 KRQELNSEIEEINTK---IEELKRLIPQKQLELSALKGEIEQAQRQLEEL 147 (907)
T ss_pred HHHHHHhHHHHHHHH---HHHHHHHHHHhHHHHHHHHhHHHHHHHHHHHH
Confidence 445666655554443 55566667666677777776666666666665
No 155
>PF13863 DUF4200: Domain of unknown function (DUF4200)
Probab=31.17 E-value=3.2e+02 Score=24.57 Aligned_cols=31 Identities=23% Similarity=0.341 Sum_probs=22.2
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007566 298 SEMRSSFGELRQKLEYLEAYCEELKKALRQA 328 (598)
Q Consensus 298 ~~lk~sl~eL~~KL~~Le~~~~~Lkk~L~q~ 328 (598)
.+....|..|..+|..|...+..|++.|...
T Consensus 77 ~~k~~ei~~l~~~l~~l~~~~~k~e~~l~~~ 107 (126)
T PF13863_consen 77 EEKEAEIKKLKAELEELKSEISKLEEKLEEY 107 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344556677777888888888888888776
No 156
>PF05983 Med7: MED7 protein; InterPro: IPR009244 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. This family consists of several eukaryotic proteins, which are homologues of the yeast MED7 protein. Activation of gene transcription in metazoans is a multistep process that is triggered by factors that recognise transcriptional enhancer sites in DNA. These factors work with co-activators such as MED7 to direct transcriptional initiation by the RNA polymerase II apparatus [].; GO: 0001104 RNA polymerase II transcription cofactor activity, 0006357 regulation of transcription from RNA polymerase II promoter, 0016592 mediator complex; PDB: 3FBI_C 3FBN_A 1YKH_A 1YKE_A.
Probab=31.03 E-value=1.5e+02 Score=28.98 Aligned_cols=26 Identities=27% Similarity=0.563 Sum_probs=11.4
Q ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHH
Q 007566 300 MRSSFGELRQKLEYLEAYCEELKKAL 325 (598)
Q Consensus 300 lk~sl~eL~~KL~~Le~~~~~Lkk~L 325 (598)
|+.-+.+.+++++.+...|.+.++.|
T Consensus 136 me~Ql~~kr~~i~~i~~~~~~~~~~l 161 (162)
T PF05983_consen 136 MEEQLEEKREEIEEIRKVCEKAREVL 161 (162)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33334444444444444444444433
No 157
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=30.84 E-value=1.1e+02 Score=37.71 Aligned_cols=39 Identities=21% Similarity=0.299 Sum_probs=30.3
Q ss_pred HHHHHhhhhhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 007566 283 LMEANESRDAALMEVSEMRSSFGELRQKLEYLEAYCEELKKALRQ 327 (598)
Q Consensus 283 L~~a~~~RDaa~~Ei~~lk~sl~eL~~KL~~Le~~~~~Lkk~L~q 327 (598)
+++.+++|..+.+| +|+.|..+|+.||+.+.+||.+|+.
T Consensus 1013 ~~a~lr~Ke~efee------tmdaLq~di~~lEsek~elKqrl~~ 1051 (1243)
T KOG0971|consen 1013 TQALLRKKEKEFEE------TMDALQADIDQLESEKAELKQRLNS 1051 (1243)
T ss_pred HHHHHHHHHHHHHH------HHHHHHHHHHHHHhhHHHHHHHhhh
Confidence 34455566665444 7899999999999999999999964
No 158
>PF11500 Cut12: Spindle pole body formation-associated protein; InterPro: IPR021589 This is the central coiled-coil region of cut12 also found in other fungi, barring S. cerevisiae. The full protein has two predicted coiled-coil regions, and one consensus phosphorylation site for p34cdc2 and two for MAP kinase. During Schizosaccharomyces japonicus yFS275 mitosis, the duplicated spindle pole bodies (SPBs) nucleate microtubule arrays that interdigitate to form the mitotic spindle. Cut12 is localised to the SPB throughout the cell cycle, predominantly around the inner face of the interphase SPB, adjacent to the nucleus []. Cut12 associates with Fin1 and is important in this context for the activity of Plo1 [].
Probab=30.11 E-value=2.1e+02 Score=28.14 Aligned_cols=68 Identities=21% Similarity=0.335 Sum_probs=36.2
Q ss_pred cCCCCC-ccccccccccccCCCCCCCCccchhHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhHHHHHHHHHhhHHHHHHH
Q 007566 232 PKSRGG-VLSWLFPRLKKKHKSENSPNRTESEEVSQVFKDLGILSIETLKRELMEANESRDAALMEVSEMRSSFGELRQK 310 (598)
Q Consensus 232 ~~~~~~-~~~~l~~~~~kk~~~~~s~~~ae~eE~q~llkt~~i~sie~L~~kL~~a~~~RDaa~~Ei~~lk~sl~eL~~K 310 (598)
|++..| -.|.=|-+-..+. -.|+..|+ .|.- |.+..+ ++||+ |+. +|.+|
T Consensus 63 P~SqSGkYWK~eFe~Y~~~a----------~~Em~KLi-~yk~-----~aKsyA---kkKD~---Ea~-------~L~~K 113 (152)
T PF11500_consen 63 PHSQSGKYWKEEFESYHEKA----------EKEMEKLI-KYKQ-----LAKSYA---KKKDA---EAM-------RLAEK 113 (152)
T ss_pred CcccccchHHHHHHHHHHHH----------HHHHHHHH-HHHH-----HHHHHH---HHHHH---HHH-------HHHHH
Confidence 444446 5566663333322 34556665 3433 333333 47888 566 44556
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 007566 311 LEYLEAYCEELKKALRQA 328 (598)
Q Consensus 311 L~~Le~~~~~Lkk~L~q~ 328 (598)
|.+-+.+..++++.|.+.
T Consensus 114 LkeEq~kv~~ME~~v~el 131 (152)
T PF11500_consen 114 LKEEQEKVAEMERHVTEL 131 (152)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 666666666666666554
No 159
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=30.07 E-value=2.3e+02 Score=30.15 Aligned_cols=29 Identities=31% Similarity=0.461 Sum_probs=11.5
Q ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Q 007566 297 VSEMRSSFGELRQKLEYLEAYCEELKKAL 325 (598)
Q Consensus 297 i~~lk~sl~eL~~KL~~Le~~~~~Lkk~L 325 (598)
|..+|..+.+|+.+|+.++....+++.++
T Consensus 225 i~~~k~~l~el~~el~~l~~~i~~~~~~k 253 (325)
T PF08317_consen 225 IEAKKKELAELQEELEELEEKIEELEEQK 253 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333334444444444444443333333
No 160
>PF14257 DUF4349: Domain of unknown function (DUF4349)
Probab=30.01 E-value=1.8e+02 Score=29.66 Aligned_cols=49 Identities=18% Similarity=0.290 Sum_probs=33.7
Q ss_pred HHHHHHHHHhhhhhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007566 279 LKRELMEANESRDAALMEVSEMRSSFGELRQKLEYLEAYCEELKKALRQA 328 (598)
Q Consensus 279 L~~kL~~a~~~RDaa~~Ei~~lk~sl~eL~~KL~~Le~~~~~Lkk~L~q~ 328 (598)
...+|.+-+++-+ .++|+.++...|.+.+.+|+.++.....|..+.+=.
T Consensus 147 ~~~rl~~ll~ka~-~~~d~l~ie~~L~~v~~eIe~~~~~~~~l~~~v~~s 195 (262)
T PF14257_consen 147 EEERLLELLEKAK-TVEDLLEIERELSRVRSEIEQLEGQLKYLDDRVDYS 195 (262)
T ss_pred HHHHHHHHHHhcC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhceE
Confidence 4455554444322 456777777888888888888888888877776533
No 161
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=29.87 E-value=3.4e+02 Score=28.99 Aligned_cols=45 Identities=18% Similarity=0.279 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHhhhhhHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Q 007566 277 ETLKRELMEANESRDAALMEVSEMRSSFGELRQKLEYLEAYCEEL 321 (598)
Q Consensus 277 e~L~~kL~~a~~~RDaa~~Ei~~lk~sl~eL~~KL~~Le~~~~~L 321 (598)
+.|..++.+-..+.|..-.||.+.+..|..|+.+|..++....+.
T Consensus 55 ~~L~~qi~~~~~k~~~~~~~i~~~~~eik~l~~eI~~~~~~I~~r 99 (265)
T COG3883 55 ESLDNQIEEIQSKIDELQKEIDQSKAEIKKLQKEIAELKENIVER 99 (265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444433355555555555555555544443333
No 162
>KOG4797 consensus Transcriptional regulator [Transcription]
Probab=29.57 E-value=88 Score=29.54 Aligned_cols=28 Identities=29% Similarity=0.309 Sum_probs=21.6
Q ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHH
Q 007566 296 EVSEMRSSFGELRQKLEYLEAYCEELKK 323 (598)
Q Consensus 296 Ei~~lk~sl~eL~~KL~~Le~~~~~Lkk 323 (598)
|++-||..|.+|.++...||++|.-||.
T Consensus 68 EVe~Lk~qI~eL~er~~~Le~EN~lLk~ 95 (123)
T KOG4797|consen 68 EVEVLKEQIRELEERNSALERENSLLKT 95 (123)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 5666777788888888888888877764
No 163
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=29.37 E-value=3e+02 Score=28.44 Aligned_cols=53 Identities=25% Similarity=0.261 Sum_probs=30.1
Q ss_pred HHHHHHHHHHHHHhhhhhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 007566 275 SIETLKRELMEANESRDAALMEVSEMRSSFGELRQKLEYLEAYCEELKKALRQ 327 (598)
Q Consensus 275 sie~L~~kL~~a~~~RDaa~~Ei~~lk~sl~eL~~KL~~Le~~~~~Lkk~L~q 327 (598)
-++.++.+++.+...|...=.|+..+|..+++.......|+..+..|+..|.-
T Consensus 83 e~~~~r~k~e~e~~~~~~le~el~~lrk~ld~~~~~r~~le~~i~~L~eEl~f 135 (312)
T PF00038_consen 83 ELEDLRRKYEEELAERKDLEEELESLRKDLDEETLARVDLENQIQSLKEELEF 135 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhHhHHHHHHHHHHHHHHH
Confidence 34556666666666666544456655555555555555555555555555543
No 164
>PF05278 PEARLI-4: Arabidopsis phospholipase-like protein (PEARLI 4); InterPro: IPR007942 This family contains several phospholipase-like proteins from Arabidopsis thaliana and other members of the Streptophyta which are homologous to PEARLI 4.
Probab=29.31 E-value=3.2e+02 Score=29.26 Aligned_cols=23 Identities=26% Similarity=0.407 Sum_probs=9.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 007566 304 FGELRQKLEYLEAYCEELKKALR 326 (598)
Q Consensus 304 l~eL~~KL~~Le~~~~~Lkk~L~ 326 (598)
|..+.++|.+.|....+++.++.
T Consensus 209 Le~~~EeL~~~Eke~~e~~~~i~ 231 (269)
T PF05278_consen 209 LEELEEELKQKEKEVKEIKERIT 231 (269)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444444444444443
No 165
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=29.31 E-value=2.8e+02 Score=26.52 Aligned_cols=47 Identities=23% Similarity=0.418 Sum_probs=25.8
Q ss_pred HHHHHHHHHhhhhhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007566 279 LKRELMEANESRDAALMEVSEMRSSFGELRQKLEYLEAYCEELKKALRQA 328 (598)
Q Consensus 279 L~~kL~~a~~~RDaa~~Ei~~lk~sl~eL~~KL~~Le~~~~~Lkk~L~q~ 328 (598)
-.+.|+..+..++- ||..|..-+..|+.+|+.++.....++.+|.+.
T Consensus 22 ~~K~le~~~~~~E~---EI~sL~~K~~~lE~eld~~~~~l~~~k~~lee~ 68 (143)
T PF12718_consen 22 KVKQLEQENEQKEQ---EITSLQKKNQQLEEELDKLEEQLKEAKEKLEES 68 (143)
T ss_pred HHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 44666666666666 566455555555555555555555555555443
No 166
>cd04779 HTH_MerR-like_sg4 Helix-Turn-Helix DNA binding domain of putative transcription regulators from the MerR superfamily. Putative helix-turn-helix (HTH) MerR-like transcription regulators (subgroup 4). Based on sequence similarity, these proteins are predicted to function as transcription regulators that mediate responses to stress in eubacteria. They belong to the MerR superfamily of transcription regulators that promote transcription of various stress regulons by reconfiguring the operator sequence located between the -35 and -10 promoter elements. A typical MerR regulator is comprised of two distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their N-terminal domains are homologous and contain a DNA-binding winged HTH motif, while the C-terminal domains are often dissimilar and bind specific coactivator molecules such as metal ions, drugs, and organic substrates.
Probab=29.23 E-value=2.3e+02 Score=26.85 Aligned_cols=26 Identities=19% Similarity=0.360 Sum_probs=15.9
Q ss_pred chhHHHHH--HHhhhhhHHHHHHHHHHHH
Q 007566 260 ESEEVSQV--FKDLGILSIETLKRELMEA 286 (598)
Q Consensus 260 e~eE~q~l--lkt~~i~sie~L~~kL~~a 286 (598)
.++-..-+ +|..|. ++++++.-|...
T Consensus 42 ~l~~l~~I~~lr~~G~-sL~eI~~~l~~~ 69 (134)
T cd04779 42 ALDRLQLIEHLKGQRL-SLAEIKDQLEEV 69 (134)
T ss_pred HHHHHHHHHHHHHCCC-CHHHHHHHHHhh
Confidence 44444433 577787 888777666543
No 167
>PF07111 HCR: Alpha helical coiled-coil rod protein (HCR); InterPro: IPR009800 This family consists of several mammalian alpha helical coiled-coil rod HCR proteins. The function of HCR is unknown but it has been implicated in psoriasis in humans and is thought to affect keratinocyte proliferation [].; GO: 0030154 cell differentiation, 0005634 nucleus, 0005737 cytoplasm
Probab=29.21 E-value=2.8e+02 Score=33.42 Aligned_cols=77 Identities=17% Similarity=0.293 Sum_probs=55.0
Q ss_pred cccccCCCCCCCCccch-hHHHHHHHhhh--hhHHHHHHHHHHHHHhhhhhHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Q 007566 245 RLKKKHKSENSPNRTES-EEVSQVFKDLG--ILSIETLKRELMEANESRDAALMEVSEMRSSFGELRQKLEYLEAYCEEL 321 (598)
Q Consensus 245 ~~~kk~~~~~s~~~ae~-eE~q~llkt~~--i~sie~L~~kL~~a~~~RDaa~~Ei~~lk~sl~eL~~KL~~Le~~~~~L 321 (598)
.+.||--| .-|+..+- .--++||+-|. ++++ |++==..+++++|. +.+|+.-+..|++++...+++..-|
T Consensus 285 EL~~Kvqp-~d~Le~e~~~K~q~LL~~WREKVFaL--mVQLkaQeleh~~~----~~qL~~qVAsLQeev~sq~qEqaiL 357 (739)
T PF07111_consen 285 ELCRKVQP-SDPLEPEFSRKCQQLLSRWREKVFAL--MVQLKAQELEHRDS----VKQLRGQVASLQEEVASQQQEQAIL 357 (739)
T ss_pred HHhccCCC-CCCCCchhHHHHHHHHHHHHHHHHHH--HHHhhHHHHHhhhH----HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666644 44455444 44479999994 4444 55544556778887 8889999999999999999988888
Q ss_pred HHHHHHH
Q 007566 322 KKALRQA 328 (598)
Q Consensus 322 kk~L~q~ 328 (598)
-..|...
T Consensus 358 q~SLqDK 364 (739)
T PF07111_consen 358 QHSLQDK 364 (739)
T ss_pred HHHHhHH
Confidence 8877655
No 168
>KOG4677 consensus Golgi integral membrane protein [Intracellular trafficking, secretion, and vesicular transport; General function prediction only]
Probab=29.14 E-value=4.5e+02 Score=30.37 Aligned_cols=112 Identities=13% Similarity=0.100 Sum_probs=62.7
Q ss_pred CCCccchhHHHHHHHhhhhhH-HHHHHHHHHHHH--------------------hhhhhHHHHHHHHHhhHHHHHHHHHH
Q 007566 255 SPNRTESEEVSQVFKDLGILS-IETLKRELMEAN--------------------ESRDAALMEVSEMRSSFGELRQKLEY 313 (598)
Q Consensus 255 s~~~ae~eE~q~llkt~~i~s-ie~L~~kL~~a~--------------------~~RDaa~~Ei~~lk~sl~eL~~KL~~ 313 (598)
+..--|++|++++++-|.|++ .|+|.--+..|. -.|+--.+|++-++..+-.||.+|++
T Consensus 262 ~~~kKe~de~k~~~~l~~~l~~keeL~~s~~~e~~i~qs~~kstas~~E~ee~rve~~~s~ed~~~~q~q~~~Lrs~~~d 341 (554)
T KOG4677|consen 262 IHFKKEIDEQKLLLDLFRFLDRKEELALSHYREHLIIQSPDKSTASRKEFEETRVELPFSAEDSAHIQDQYTLLRSQIID 341 (554)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhccCCCCcchhHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHH
Confidence 444457999999998888643 222222222111 11222223445555566677777777
Q ss_pred HHHHHHHHHHHHHHHhhccCcccchhhhccCCCCCCCccCCCCCCccCccccccHHHHHHHHHHHHHHHHHHHHH
Q 007566 314 LEAYCEELKKALRQAATHAKDSHQVNEKLGNFPRRGKSIDGNGESLMPVSEEAMVEGFLQIVSEARLSVKQFCKT 388 (598)
Q Consensus 314 Le~~~~~Lkk~L~q~~~~~k~~~~h~ek~~~~~rs~~s~d~~g~~~~pvs~~lt~e~Fl~~l~~ArkSIr~FaKl 388 (598)
+|+.--.|+.++..- .. .+| +.+.+- + .+ -+..+.|+.++.+-...+..|.+.
T Consensus 342 ~EAq~r~l~s~~~~q-~~----~~h-~~ka~~-------~-----~~----~~~l~~~~ec~~~e~e~~~~~~~r 394 (554)
T KOG4677|consen 342 IEAQDRHLESAGQTQ-IF----RKH-PRKASI-------L-----NM----PLVLTLFYECFYHETEAEGTFSSR 394 (554)
T ss_pred HHHHHHhHHHHhHHH-HH----Hhh-hHhhhh-------h-----hc----hHHHHHHHHHHHHHHHHhhhhhhh
Confidence 777777777766544 21 123 222111 1 12 134568999999988888888764
No 169
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family. In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.
Probab=29.14 E-value=1.8e+02 Score=28.95 Aligned_cols=33 Identities=24% Similarity=0.314 Sum_probs=23.8
Q ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007566 296 EVSEMRSSFGELRQKLEYLEAYCEELKKALRQA 328 (598)
Q Consensus 296 Ei~~lk~sl~eL~~KL~~Le~~~~~Lkk~L~q~ 328 (598)
|-.+++..+.+|+++++.|+..+..|++++..-
T Consensus 105 e~~~l~~e~~~l~~~~e~Le~e~~~L~~~~~~~ 137 (161)
T TIGR02894 105 ENERLKNQNESLQKRNEELEKELEKLRQRLSTI 137 (161)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555556788888888888888888877654
No 170
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=28.96 E-value=3.1e+02 Score=25.71 Aligned_cols=46 Identities=24% Similarity=0.330 Sum_probs=23.5
Q ss_pred HHHHHHHhhhhhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Q 007566 281 RELMEANESRDAALMEVSEMRSSFGELRQKLEYLEAYCEELKKALR 326 (598)
Q Consensus 281 ~kL~~a~~~RDaa~~Ei~~lk~sl~eL~~KL~~Le~~~~~Lkk~L~ 326 (598)
+.-....+.|....+++.++.+.+..|...++.|+..+..+++.+.
T Consensus 45 ~~~~r~~~~~e~l~~~~~~l~~d~~~l~~~~~rL~~~~~~~ere~~ 90 (151)
T PF11559_consen 45 QQRDRDMEQREDLSDKLRRLRSDIERLQNDVERLKEQLEELERELA 90 (151)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444445555555555555555555555555555444
No 171
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=28.89 E-value=1.4e+02 Score=37.58 Aligned_cols=93 Identities=17% Similarity=0.174 Sum_probs=41.8
Q ss_pred cceeeeCCCCCCccccCcCCCCCccccccccccccCCCCCCCCccchhHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhHH
Q 007566 215 SNIVVPLTDSHSMVHSQPKSRGGVLSWLFPRLKKKHKSENSPNRTESEEVSQVFKDLGILSIETLKRELMEANESRDAAL 294 (598)
Q Consensus 215 ~~~~~pl~~~~~s~~~~~~~~~~~~~~l~~~~~kk~~~~~s~~~ae~eE~q~llkt~~i~sie~L~~kL~~a~~~RDaa~ 294 (598)
..+++|-.+.. -.++.|+.+..+|..||.--+=.. -.+....+.|.|+. -+..+..+|+.-...|+.
T Consensus 152 ~vi~~~Qge~~-~~~~~~~~rk~~~d~if~~~~y~k---------~~~~~~~~~k~~~~-~~~~~~~~~~~~~~~~~~-- 218 (1311)
T TIGR00606 152 NVIFCHQEDSN-WPLSEGKALKQKFDEIFSATRYIK---------ALETLRQVRQTQGQ-KVQEHQMELKYLKQYKEK-- 218 (1311)
T ss_pred hceeeCCcccc-cccCChHHHHHHHHHHhhhhHHHH---------HHHHHHHHHHHHHH-HHHHHHHHHHHHHHhHHH--
Confidence 34455655542 345666666557776664322111 23334444455544 344444444444444443
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHH
Q 007566 295 MEVSEMRSSFGELRQKLEYLEAYCEELK 322 (598)
Q Consensus 295 ~Ei~~lk~sl~eL~~KL~~Le~~~~~Lk 322 (598)
+.+++..|..++++++.+...+..|+
T Consensus 219 --~~~ir~~l~~~q~kie~~~~~~~~le 244 (1311)
T TIGR00606 219 --ACEIRDQITSKEAQLESSREIVKSYE 244 (1311)
T ss_pred --HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 23333344444444444444444333
No 172
>KOG4343 consensus bZIP transcription factor ATF6 [Transcription]
Probab=28.81 E-value=2e+02 Score=33.64 Aligned_cols=35 Identities=17% Similarity=0.227 Sum_probs=28.0
Q ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhccC
Q 007566 299 EMRSSFGELRQKLEYLEAYCEELKKALRQAATHAK 333 (598)
Q Consensus 299 ~lk~sl~eL~~KL~~Le~~~~~Lkk~L~q~~~~~k 333 (598)
-|+.-|.+|.++.+.|..+|..|+++|..-.++|+
T Consensus 306 ~Le~rLq~ll~Ene~Lk~ENatLk~qL~~l~~En~ 340 (655)
T KOG4343|consen 306 GLEARLQALLSENEQLKKENATLKRQLDELVSENQ 340 (655)
T ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhcCc
Confidence 35555778888899999999999999998866555
No 173
>COG2882 FliJ Flagellar biosynthesis chaperone [Cell motility and secretion / Intracellular trafficking and secretion / Posttranslational modification, protein turnover, chaperones]
Probab=28.79 E-value=5.7e+02 Score=25.10 Aligned_cols=79 Identities=20% Similarity=0.296 Sum_probs=51.3
Q ss_pred hhhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhccCcccchhhhccCCCCCCCccCCCCCCccCccccccHH
Q 007566 290 RDAALMEVSEMRSSFGELRQKLEYLEAYCEELKKALRQAATHAKDSHQVNEKLGNFPRRGKSIDGNGESLMPVSEEAMVE 369 (598)
Q Consensus 290 RDaa~~Ei~~lk~sl~eL~~KL~~Le~~~~~Lkk~L~q~~~~~k~~~~h~ek~~~~~rs~~s~d~~g~~~~pvs~~lt~e 369 (598)
.|.+..|+.+++...+.-.++|..|..|..++..++....- +| +.+....+..
T Consensus 18 ~e~a~~el~k~~~~~~~~~~qL~~l~~y~~ey~q~~~~k~~------------------------~G---~s~~q~~nyq 70 (148)
T COG2882 18 EEEAAIELSKIRSEKENAEEQLKMLSGYRNEYEQNLNEKLK------------------------SG---VSAAQWQNYQ 70 (148)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh------------------------cc---ccHHHHHHHH
Confidence 34445678888888888889999999999998888776520 12 1122234788
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Q 007566 370 GFLQIVSEARLSVKQFCKTLVAQIEE 395 (598)
Q Consensus 370 ~Fl~~l~~ArkSIr~FaKlLI~~Mr~ 395 (598)
.|++.|+.+..=-++=...+...|+.
T Consensus 71 ~fI~~Le~~I~q~~~~~~~~~~~ve~ 96 (148)
T COG2882 71 QFISQLEVAIDQQQSQLSKLRKQVEQ 96 (148)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99998887765444333333344443
No 174
>TIGR02209 ftsL_broad cell division protein FtsL. This model represents FtsL, both forms similar to that in E. coli and similar to that in B. subtilis. FtsL is one of the later proteins active in cell division septum formation. FtsL is small, low in complexity, and highly divergent. The scope of this model is broader than that of the Pfam model pfam04999.3 for FtsL, as this one includes FtsL from Bacillus subtilis and related species.
Probab=28.76 E-value=1.5e+02 Score=24.86 Aligned_cols=29 Identities=10% Similarity=0.285 Sum_probs=19.7
Q ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007566 300 MRSSFGELRQKLEYLEAYCEELKKALRQA 328 (598)
Q Consensus 300 lk~sl~eL~~KL~~Le~~~~~Lkk~L~q~ 328 (598)
+...+..++++++.++..+.+|+..+..-
T Consensus 29 ~~~~~~~~~~~~~~l~~en~~L~~ei~~l 57 (85)
T TIGR02209 29 LNNELQKLQLEIDKLQKEWRDLQLEVAEL 57 (85)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33345577777777777887777777654
No 175
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=28.36 E-value=2.7e+02 Score=32.57 Aligned_cols=31 Identities=23% Similarity=0.309 Sum_probs=15.3
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Q 007566 295 MEVSEMRSSFGELRQKLEYLEAYCEELKKAL 325 (598)
Q Consensus 295 ~Ei~~lk~sl~eL~~KL~~Le~~~~~Lkk~L 325 (598)
.|...|+....+++.++..|+..+..|..++
T Consensus 206 ~E~~~L~~q~~e~~~ri~~LEedi~~l~qk~ 236 (546)
T PF07888_consen 206 EERESLKEQLAEARQRIRELEEDIKTLTQKE 236 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455555555555555554444444333
No 176
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=28.16 E-value=3.2e+02 Score=23.61 Aligned_cols=27 Identities=33% Similarity=0.404 Sum_probs=11.7
Q ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHH
Q 007566 296 EVSEMRSSFGELRQKLEYLEAYCEELK 322 (598)
Q Consensus 296 Ei~~lk~sl~eL~~KL~~Le~~~~~Lk 322 (598)
|+.+||..-..|.++-+.|...|..|+
T Consensus 26 e~eeLke~n~~L~~e~~~L~~en~~L~ 52 (72)
T PF06005_consen 26 ENEELKEKNNELKEENEELKEENEQLK 52 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 444444443344444444444444444
No 177
>PF06818 Fez1: Fez1; InterPro: IPR009638 This family represents the eukaryotic Fez1 protein. Fez1 contains a leucine-zipper region with similarity to the DNA-binding domain of the cAMP-responsive activating-transcription factor 5 []. There is evidence that Fez1 inhibits cancer cell growth through regulation of mitosis, and that its alterations result in abnormal cell growth []. Note that some family members contain more than one copy of this region.; GO: 0005737 cytoplasm, 0016020 membrane
Probab=28.14 E-value=2.5e+02 Score=28.94 Aligned_cols=46 Identities=28% Similarity=0.443 Sum_probs=36.6
Q ss_pred HHHHHHHHhhhhhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007566 280 KRELMEANESRDAALMEVSEMRSSFGELRQKLEYLEAYCEELKKALRQA 328 (598)
Q Consensus 280 ~~kL~~a~~~RDaa~~Ei~~lk~sl~eL~~KL~~Le~~~~~Lkk~L~q~ 328 (598)
.++.++++-.|+. ||-.||+.|.+++.+++..+.....|...+...
T Consensus 19 Lke~q~E~~~K~~---Eiv~Lr~ql~e~~~~l~~~~~~~~~l~~~~~~K 64 (202)
T PF06818_consen 19 LKESQAEVNQKDS---EIVSLRAQLRELRAELRNKESQIQELQDSLRTK 64 (202)
T ss_pred HHHHHHHHHHHHh---HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHh
Confidence 3556667777888 588899999999999999888888888776554
No 178
>PF02403 Seryl_tRNA_N: Seryl-tRNA synthetase N-terminal domain; InterPro: IPR015866 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the N-terminal domain of Seryl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Seryl-tRNA synthetase (6.1.1.11 from EC) exists as monomer and belongs to class IIa [].; GO: 0000166 nucleotide binding, 0004828 serine-tRNA ligase activity, 0005524 ATP binding, 0006434 seryl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3QO8_A 3QO5_A 3QO7_A 3QNE_A 3LSQ_A 3LSS_A 2DQ3_B 1SET_A 1SER_A 1SRY_B ....
Probab=27.89 E-value=4.2e+02 Score=23.33 Aligned_cols=32 Identities=25% Similarity=0.466 Sum_probs=24.5
Q ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007566 297 VSEMRSSFGELRQKLEYLEAYCEELKKALRQA 328 (598)
Q Consensus 297 i~~lk~sl~eL~~KL~~Le~~~~~Lkk~L~q~ 328 (598)
+.+++..+..+.++|..++....+++.+|...
T Consensus 69 ~~~l~~e~~~lk~~i~~le~~~~~~e~~l~~~ 100 (108)
T PF02403_consen 69 AEELKAEVKELKEEIKELEEQLKELEEELNEL 100 (108)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44566677788888888888888888888766
No 179
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=27.77 E-value=2.4e+02 Score=30.19 Aligned_cols=9 Identities=11% Similarity=0.700 Sum_probs=4.5
Q ss_pred hhHHHHHHH
Q 007566 487 EEFSKFCDQ 495 (598)
Q Consensus 487 s~FskFC~~ 495 (598)
..|+.||.+
T Consensus 250 ~q~~~~~~~ 258 (314)
T PF04111_consen 250 QQLAEFVEK 258 (314)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 345555554
No 180
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=27.16 E-value=3.8e+02 Score=28.92 Aligned_cols=29 Identities=24% Similarity=0.290 Sum_probs=11.9
Q ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Q 007566 297 VSEMRSSFGELRQKLEYLEAYCEELKKAL 325 (598)
Q Consensus 297 i~~lk~sl~eL~~KL~~Le~~~~~Lkk~L 325 (598)
|..++..+.+++++|+.++....+++.+.
T Consensus 220 i~~~~~~l~e~~~~l~~l~~~I~~~~~~k 248 (312)
T smart00787 220 IMIKVKKLEELEEELQELESKIEDLTNKK 248 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444444433333333
No 181
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=27.13 E-value=1.9e+02 Score=35.79 Aligned_cols=47 Identities=23% Similarity=0.334 Sum_probs=35.8
Q ss_pred HHHHHHHhhhhhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 007566 281 RELMEANESRDAALMEVSEMRSSFGELRQKLEYLEAYCEELKKALRQAATH 331 (598)
Q Consensus 281 ~kL~~a~~~RDaa~~Ei~~lk~sl~eL~~KL~~Le~~~~~Lkk~L~q~~~~ 331 (598)
+||..+++.+.+++.| ++.--..|.++++.+|+....|+++++.+ +.
T Consensus 399 qK~~kelE~k~sE~~e---L~r~kE~Lsr~~d~aEs~iadlkEQVDAA-lG 445 (1243)
T KOG0971|consen 399 QKLQKELEKKNSELEE---LRRQKERLSRELDQAESTIADLKEQVDAA-LG 445 (1243)
T ss_pred HHHHHHHHHHhhHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHh-hc
Confidence 5777777788885444 55555566689999999999999999887 54
No 182
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=26.98 E-value=5.2e+02 Score=24.06 Aligned_cols=48 Identities=21% Similarity=0.320 Sum_probs=33.7
Q ss_pred HHHHHHHhhhhhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007566 281 RELMEANESRDAALMEVSEMRSSFGELRQKLEYLEAYCEELKKALRQA 328 (598)
Q Consensus 281 ~kL~~a~~~RDaa~~Ei~~lk~sl~eL~~KL~~Le~~~~~Lkk~L~q~ 328 (598)
.+.+.++-+--+++.++..+|..+..++.++..|.......+..|.+.
T Consensus 45 ~~YE~El~~Ha~~~~~L~~lr~e~~~~~~~~~~l~~~~~~a~~~l~~~ 92 (132)
T PF07926_consen 45 QKYERELVKHAEDIKELQQLREELQELQQEINELKAEAESAKAELEES 92 (132)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444455556788888888888888888888888877777766
No 183
>PF04799 Fzo_mitofusin: fzo-like conserved region; InterPro: IPR006884 This entry represents the heptad repeat domain which is conserved at the C terminus of Fzo/mitofusion family of GTPases. Fzo is a mediator of mitochondrial fusion during spermatogenesis []. This conserved region is also found in the human mitofusin protein []. This domain forms a dimeric antiparallel coiled coil structure, which has been proposed to act as a mitochodrial tether before vesicle fusion [].; GO: 0003924 GTPase activity, 0006184 GTP catabolic process, 0008053 mitochondrial fusion, 0005741 mitochondrial outer membrane, 0016021 integral to membrane; PDB: 1T3J_A.
Probab=26.97 E-value=3.9e+02 Score=26.92 Aligned_cols=29 Identities=24% Similarity=0.339 Sum_probs=11.7
Q ss_pred HHHHHHHhhhhhHHHHHHHHHHHHHhhhhh
Q 007566 263 EVSQVFKDLGILSIETLKRELMEANESRDA 292 (598)
Q Consensus 263 E~q~llkt~~i~sie~L~~kL~~a~~~RDa 292 (598)
|++..+.-+.. .+++...+|+.++..=..
T Consensus 106 eL~~tf~rL~~-~Vd~~~~eL~~eI~~L~~ 134 (171)
T PF04799_consen 106 ELSSTFARLCQ-QVDQTKNELEDEIKQLEK 134 (171)
T ss_dssp ----HHHHHHH-HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHH-HHHHHHHHHHHHHHHHHH
Confidence 33333433444 444555555554444444
No 184
>TIGR01950 SoxR redox-sensitive transcriptional activator SoxR. SoxR is a MerR-family homodimeric transcription factor with a 2Fe-2S cluster in each monomer. The motif CIGCGCxxxxxC is conserved. Oxidation of the iron-sulfur cluster activates SoxR. The physiological role in E. coli is response to oxidative stress. It is activated by superoxide, singlet oxygen, nitric oxide (NO), and hydrogen peroxide. In E. coli, SoxR increases expression of transcription factor SoxS; different downstream targets may exist in other species.
Probab=26.69 E-value=2.4e+02 Score=26.83 Aligned_cols=66 Identities=18% Similarity=0.240 Sum_probs=36.4
Q ss_pred chhHHH--HHHHhhhhhHHHHHHHHHHHHHhhhhhHHHHHH-HHHhhHHHHHHHHHHHHHHHHHHHHHHH
Q 007566 260 ESEEVS--QVFKDLGILSIETLKRELMEANESRDAALMEVS-EMRSSFGELRQKLEYLEAYCEELKKALR 326 (598)
Q Consensus 260 e~eE~q--~llkt~~i~sie~L~~kL~~a~~~RDaa~~Ei~-~lk~sl~eL~~KL~~Le~~~~~Lkk~L~ 326 (598)
.++..+ ..||..|+ ++++++.-|..-.......+.++. -+...+.+|++++++|+.-...|...+.
T Consensus 43 di~~l~~I~~lr~~G~-sL~eI~~~l~~~~~~~~~~~~~~~~~l~~~~~~l~~ki~~L~~~~~~L~~~~~ 111 (142)
T TIGR01950 43 VLRRVAVIKAAQRVGI-PLATIGEALAVLPEGRTPTADDWARLSSQWREELDERIDQLNALRDQLDGCIG 111 (142)
T ss_pred HHHHHHHHHHHHHcCC-CHHHHHHHHHhcccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 444444 33688887 888877666532211111111221 1244466777777777777777776665
No 185
>PRK10698 phage shock protein PspA; Provisional
Probab=26.57 E-value=2.7e+02 Score=28.37 Aligned_cols=32 Identities=28% Similarity=0.338 Sum_probs=18.0
Q ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007566 297 VSEMRSSFGELRQKLEYLEAYCEELKKALRQA 328 (598)
Q Consensus 297 i~~lk~sl~eL~~KL~~Le~~~~~Lkk~L~q~ 328 (598)
+.+|+..+..|+.||.++..+...|.-+.+.+
T Consensus 115 ~~~L~~~l~~L~~ki~eak~k~~~L~aR~~~A 146 (222)
T PRK10698 115 LARMKKEIGELENKLSETRARQQALMLRHQAA 146 (222)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455555555555555555555555555544
No 186
>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription. The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].
Probab=26.56 E-value=5.5e+02 Score=25.39 Aligned_cols=33 Identities=36% Similarity=0.452 Sum_probs=19.4
Q ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007566 296 EVSEMRSSFGELRQKLEYLEAYCEELKKALRQA 328 (598)
Q Consensus 296 Ei~~lk~sl~eL~~KL~~Le~~~~~Lkk~L~q~ 328 (598)
.+.+|+..|..|+.||++++.+...|.-+....
T Consensus 113 ~~~~l~~~l~~l~~kl~e~k~k~~~l~ar~~~a 145 (221)
T PF04012_consen 113 QVEKLKEQLEELEAKLEELKSKREELKARENAA 145 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345556666666666666666666665555544
No 187
>cd04765 HTH_MlrA-like_sg2 Helix-Turn-Helix DNA binding domain of putative MlrA-like transcription regulators. Putative helix-turn-helix (HTH) MlrA-like transcription regulators (subgroup 2), N-terminal domain. The MlrA protein, also known as YehV, has been shown to control cell-cell aggregation by co-regulating the expression of curli and extracellular matrix production in Escherichia coli and Salmonella typhimurium. These proteins belong to the MerR superfamily of transcription regulators that promote expression of several stress regulon genes by reconfiguring the spacer between the -35 and -10 promoter elements. Their conserved N-terminal domains contain predicted HTH motifs that mediate DNA binding, while the dissimilar C-terminal domains bind specific coactivator molecules.
Probab=26.29 E-value=95 Score=27.64 Aligned_cols=51 Identities=22% Similarity=0.282 Sum_probs=27.3
Q ss_pred hHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Q 007566 262 EEVSQVFKDLGILSIETLKRELMEANESRDAALMEVSEMRSSFGELRQKLEYLEAYCEELKKA 324 (598)
Q Consensus 262 eE~q~llkt~~i~sie~L~~kL~~a~~~RDaa~~Ei~~lk~sl~eL~~KL~~Le~~~~~Lkk~ 324 (598)
.....++|..|+ ++++++.-|...... +.- .| ++.++|.++......|+.+
T Consensus 48 ~~I~~llr~~G~-~l~~i~~~l~~~~~~-~~~-~~---------~~~~~~~~~~~~~~~l~~~ 98 (99)
T cd04765 48 LLIKHLLYEKGY-TIEGAKQALKEDGAA-AIR-EE---------EAEERLPSIRAELLDLRDQ 98 (99)
T ss_pred HHHHHHHHHCCC-CHHHHHHHHHhcccc-ccc-hh---------hHHHHHHHHHHHHHHHHhc
Confidence 334455688887 887777766632211 111 01 3445666666666666543
No 188
>PF05600 DUF773: Protein of unknown function (DUF773); InterPro: IPR008491 This family contains several eukaryotic sequences which are thought to be CDK5 activator-binding proteins, however, the function of this family is unknown.
Probab=26.29 E-value=2.3e+02 Score=32.42 Aligned_cols=29 Identities=28% Similarity=0.324 Sum_probs=24.5
Q ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007566 300 MRSSFGELRQKLEYLEAYCEELKKALRQA 328 (598)
Q Consensus 300 lk~sl~eL~~KL~~Le~~~~~Lkk~L~q~ 328 (598)
++.++.+|+.||+.|...+.+|++.|.+.
T Consensus 465 ~~~e~~~l~pkL~~l~~~Tr~Lq~~iE~~ 493 (507)
T PF05600_consen 465 AQEEQQELEPKLDALVERTRELQKQIEAD 493 (507)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 45557789999999999999999998876
No 189
>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89
Probab=25.97 E-value=4.1e+02 Score=22.74 Aligned_cols=67 Identities=18% Similarity=0.150 Sum_probs=0.0
Q ss_pred CccchhHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Q 007566 257 NRTESEEVSQVFKDLGILSIETLKRELMEANESRDAALMEVSEMRSSFGELRQKLEYLEAYCEELKKA 324 (598)
Q Consensus 257 ~~ae~eE~q~llkt~~i~sie~L~~kL~~a~~~RDaa~~Ei~~lk~sl~eL~~KL~~Le~~~~~Lkk~ 324 (598)
+.+++...|.=|....= =++.....+..=.+.||.++.-+...-..+.+|+.+++.|...+.++.++
T Consensus 3 Lea~~~~Lr~rLd~~~r-k~~~~~~~~k~L~~ERd~~~~~l~~a~~e~~~Lk~E~e~L~~el~~~r~~ 69 (69)
T PF14197_consen 3 LEAEIATLRNRLDSLTR-KNSVHEIENKRLRRERDSAERQLGDAYEENNKLKEENEALRKELEELRAQ 69 (69)
T ss_pred HHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
No 190
>PF15233 SYCE1: Synaptonemal complex central element protein 1
Probab=25.95 E-value=2.9e+02 Score=26.82 Aligned_cols=55 Identities=18% Similarity=0.235 Sum_probs=36.4
Q ss_pred HHHHHHHhhhhhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhccCcccch
Q 007566 281 RELMEANESRDAALMEVSEMRSSFGELRQKLEYLEAYCEELKKALRQAATHAKDSHQV 338 (598)
Q Consensus 281 ~kL~~a~~~RDaa~~Ei~~lk~sl~eL~~KL~~Le~~~~~Lkk~L~q~~~~~k~~~~h 338 (598)
.+|+++-.+=. +|..+.+.-...|.++|+.|......|++-|..-.--.+.++.|
T Consensus 16 nelQQaKKk~~---EELgEa~~l~eaL~~ELDsL~~EkvhLeeilnkKqe~l~iLqlh 70 (134)
T PF15233_consen 16 NELQQAKKKSS---EELGEAQALWEALQRELDSLNGEKVHLEEILNKKQETLRILQLH 70 (134)
T ss_pred HHHHHHHHHhH---HHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 55665333323 36666667777888999999999999888887653222455555
No 191
>PF07716 bZIP_2: Basic region leucine zipper; InterPro: IPR011700 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotes are proteins that contain a basic region mediating sequence-specific DNA-binding, followed by a leucine zipper region (see IPR002158 from INTERPRO), which is required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1NWQ_A 1H89_B 1H88_A 1GTW_B 2E43_A 1IO4_A 1GU4_B 2E42_A 1H8A_B 1GU5_B ....
Probab=25.74 E-value=1.5e+02 Score=23.48 Aligned_cols=29 Identities=28% Similarity=0.342 Sum_probs=20.2
Q ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007566 300 MRSSFGELRQKLEYLEAYCEELKKALRQA 328 (598)
Q Consensus 300 lk~sl~eL~~KL~~Le~~~~~Lkk~L~q~ 328 (598)
.|..+.+|+.++..|+..|..|...+...
T Consensus 23 kk~~~~~le~~~~~L~~en~~L~~~i~~L 51 (54)
T PF07716_consen 23 KKQREEELEQEVQELEEENEQLRQEIAQL 51 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445677778888888888887776543
No 192
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=25.69 E-value=2.8e+02 Score=32.53 Aligned_cols=45 Identities=36% Similarity=0.419 Sum_probs=34.0
Q ss_pred HHHHHHHhhhhhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007566 281 RELMEANESRDAALMEVSEMRSSFGELRQKLEYLEAYCEELKKALRQA 328 (598)
Q Consensus 281 ~kL~~a~~~RDaa~~Ei~~lk~sl~eL~~KL~~Le~~~~~Lkk~L~q~ 328 (598)
.+|...++.-++ |+.+++.++.++.+++++.+..+.+|++.++..
T Consensus 338 ~~l~~~i~~~~~---~~~~l~~~~~q~~~e~~~~~~~~~~le~~~~l~ 382 (594)
T PF05667_consen 338 DELESQIEELEA---EIKMLKSSLKQLEEELEEKEAENEELEEELKLK 382 (594)
T ss_pred HHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444 688899999999999999999999998888755
No 193
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=25.63 E-value=6.6e+02 Score=28.93 Aligned_cols=34 Identities=15% Similarity=0.271 Sum_probs=24.2
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHh
Q 007566 367 MVEGFLQIVSEARLSVKQFCKTLVAQIEETDHTLMDNL 404 (598)
Q Consensus 367 t~e~Fl~~l~~ArkSIr~FaKlLI~~Mr~AgwDL~aAa 404 (598)
-|+.|+..+..+...|+...+ .|..-..++++.-
T Consensus 442 ip~~y~~~~~~~~~~i~~l~~----~L~~g~VNm~ai~ 475 (569)
T PRK04778 442 LPEDYLEMFFEVSDEIEALAE----ELEEKPINMEAVN 475 (569)
T ss_pred CcHHHHHHHHHHHHHHHHHHH----HhccCCCCHHHHH
Confidence 467899999999999988544 5555556665543
No 194
>TIGR00219 mreC rod shape-determining protein MreC. MreC (murein formation C) is involved in the rod shape determination in E. coli, and more generally in cell shape determination of bacteria whether or not they are rod-shaped. Cells defective in MreC are round. Species with MreC include many of the Proteobacteria, Gram-positives, and spirochetes.
Probab=25.51 E-value=2.4e+02 Score=29.79 Aligned_cols=19 Identities=16% Similarity=0.132 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 007566 310 KLEYLEAYCEELKKALRQA 328 (598)
Q Consensus 310 KL~~Le~~~~~Lkk~L~q~ 328 (598)
.+++++++|.+|++-|+-.
T Consensus 92 ~~~~l~~EN~rLr~LL~~~ 110 (283)
T TIGR00219 92 LTQNLKQENVRLRELLNSP 110 (283)
T ss_pred HHHHHHHHHHHHHHHhcCc
Confidence 3445888888888877654
No 195
>PRK07720 fliJ flagellar biosynthesis chaperone; Validated
Probab=25.21 E-value=5.6e+02 Score=23.82 Aligned_cols=93 Identities=18% Similarity=0.212 Sum_probs=57.7
Q ss_pred HHHHhhhhhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhccCcccchhhhccCCCCCCCccCCCCCCccCcc
Q 007566 284 MEANESRDAALMEVSEMRSSFGELRQKLEYLEAYCEELKKALRQAATHAKDSHQVNEKLGNFPRRGKSIDGNGESLMPVS 363 (598)
Q Consensus 284 ~~a~~~RDaa~~Ei~~lk~sl~eL~~KL~~Le~~~~~Lkk~L~q~~~~~k~~~~h~ek~~~~~rs~~s~d~~g~~~~pvs 363 (598)
.-+.+..|.|..+..+++..+...+.+|+.|+.|..+...++.+.+.. | +++.
T Consensus 12 ~l~~~~ee~a~~~L~~a~~~~~~~~~~L~~L~~~~~~~~~~~~~~~~~------------------------g---~~~~ 64 (146)
T PRK07720 12 ELKENEKEKALGEYEEAVSRFEQVAEKLYELLKQKEDLEQAKEEKLQS------------------------G---LSIQ 64 (146)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC------------------------C---CCHH
Confidence 334445566666777777777788889999999999888888776310 1 1112
Q ss_pred ccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHH
Q 007566 364 EEAMVEGFLQIVSEARLSVKQFCKTLVAQIEETDHTLMDN 403 (598)
Q Consensus 364 ~~lt~e~Fl~~l~~ArkSIr~FaKlLI~~Mr~AgwDL~aA 403 (598)
.-..-..|+..+..+......=...+-..++.....+.++
T Consensus 65 ~l~~~~~fl~~L~~~i~~q~~~v~~~~~~ve~~r~~~~ea 104 (146)
T PRK07720 65 EIRHYQQFVTNLERTIDHYQLLVMQAREQMNRKQQDLTEK 104 (146)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2334456777777776666655555555555554444444
No 196
>PF14555 UBA_4: UBA-like domain; PDB: 2DAL_A 3BQ3_A 2L4E_A 2L4F_A 2DZL_A 2L2D_A 2DAM_A 1V92_A 3E21_A.
Probab=25.09 E-value=58 Score=24.76 Aligned_cols=19 Identities=16% Similarity=0.272 Sum_probs=15.2
Q ss_pred HHHHHHhcCCCHHHHhhhh
Q 007566 389 LVAQIEETDHTLMDNLNVL 407 (598)
Q Consensus 389 LI~~Mr~AgwDL~aAansi 407 (598)
-+..|+.++|||..|++..
T Consensus 18 A~~~L~~~~wdle~Av~~y 36 (43)
T PF14555_consen 18 AIQYLEANNWDLEAAVNAY 36 (43)
T ss_dssp HHHHHHHTTT-HHHHHHHH
T ss_pred HHHHHHHcCCCHHHHHHHH
Confidence 4578899999999999864
No 197
>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]
Probab=24.88 E-value=2.3e+02 Score=35.25 Aligned_cols=34 Identities=26% Similarity=0.306 Sum_probs=20.3
Q ss_pred HHHHHHHHhhhhcCCCceeEEecCCCccchhhhhh
Q 007566 523 KCIWLLHLLAFSFNPPLGILRVEDNRSFDAHYMED 557 (598)
Q Consensus 523 KsVWLLH~LAFSFdP~asIFrV~rG~~Fs~vYMEs 557 (598)
|--||--.|+ +.+|.=.|.+|-.---|..+|--.
T Consensus 1221 k~~~~~~~~~-ain~sd~~~~~ha~~v~~~~y~~~ 1254 (1283)
T KOG1916|consen 1221 KLRYLTEAVL-AINPSDPITRVHARPVFEQVYQIL 1254 (1283)
T ss_pred HHHHHHHHHH-hcCccCchhHhhhhHHHHHHHHHH
Confidence 3345444332 567777777777766777777443
No 198
>TIGR02338 gimC_beta prefoldin, beta subunit, archaeal. Chaperonins are cytosolic, ATP-dependent molecular chaperones, with a conserved toroidal architecture, that assist in the folding of nascent and/or denatured polypeptide chains. The group I chaperonin system consists of GroEL and GroES, and is found (usually) in bacteria and organelles of bacterial origin. The group II chaperonin system, called the thermosome in Archaea and TRiC or CCT in the Eukaryota, is structurally similar but only distantly related. Prefoldin, also called GimC, is a complex in Archaea and Eukaryota, that works with group II chaperonins. Members of this protein family are the archaeal clade of the beta class of prefoldin subunit. Closely related, but outside the scope of this family are the eukaryotic beta-class prefoldin subunits, Gim-1,3,4 and 6. The alpha class prefoldin subunits are more distantly related.
Probab=24.77 E-value=2.8e+02 Score=25.00 Aligned_cols=49 Identities=20% Similarity=0.308 Sum_probs=30.2
Q ss_pred hHHHHHHHHHHHHHhhhhhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007566 274 LSIETLKRELMEANESRDAALMEVSEMRSSFGELRQKLEYLEAYCEELKKALRQA 328 (598)
Q Consensus 274 ~sie~L~~kL~~a~~~RDaa~~Ei~~lk~sl~eL~~KL~~Le~~~~~Lkk~L~q~ 328 (598)
|-|+.-+.++...+.+|-.. +...+..|.+++.+++....+++++|++.
T Consensus 59 vlv~~~~~e~~~~l~~r~e~------ie~~i~~lek~~~~l~~~l~e~q~~l~~~ 107 (110)
T TIGR02338 59 LLVKTDKEEAIQELKEKKET------LELRVKTLQRQEERLREQLKELQEKIQEA 107 (110)
T ss_pred hhheecHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444455555555555543 23446677777777777777777777765
No 199
>PF07716 bZIP_2: Basic region leucine zipper; InterPro: IPR011700 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotes are proteins that contain a basic region mediating sequence-specific DNA-binding, followed by a leucine zipper region (see IPR002158 from INTERPRO), which is required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1NWQ_A 1H89_B 1H88_A 1GTW_B 2E43_A 1IO4_A 1GU4_B 2E42_A 1H8A_B 1GU5_B ....
Probab=24.71 E-value=2.9e+02 Score=21.90 Aligned_cols=38 Identities=24% Similarity=0.279 Sum_probs=26.8
Q ss_pred HHhhhhhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Q 007566 286 ANESRDAALMEVSEMRSSFGELRQKLEYLEAYCEELKK 323 (598)
Q Consensus 286 a~~~RDaa~~Ei~~lk~sl~eL~~KL~~Le~~~~~Lkk 323 (598)
+-+-|..--+++..|...+..|..+.+.|...+..|+.
T Consensus 16 A~r~R~rkk~~~~~le~~~~~L~~en~~L~~~i~~L~~ 53 (54)
T PF07716_consen 16 ARRSRQRKKQREEELEQEVQELEEENEQLRQEIAQLER 53 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 33334443345667778888888888888888888865
No 200
>COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning]
Probab=24.70 E-value=6.5e+02 Score=29.42 Aligned_cols=32 Identities=22% Similarity=0.415 Sum_probs=27.9
Q ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007566 297 VSEMRSSFGELRQKLEYLEAYCEELKKALRQA 328 (598)
Q Consensus 297 i~~lk~sl~eL~~KL~~Le~~~~~Lkk~L~q~ 328 (598)
+.+|+..|+.-+++|+.|.+..++|+++|+.-
T Consensus 332 l~kl~~eie~kEeei~~L~~~~d~L~~q~~kq 363 (622)
T COG5185 332 LEKLKSEIELKEEEIKALQSNIDELHKQLRKQ 363 (622)
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhc
Confidence 67888889999999999999999999998754
No 201
>PF10805 DUF2730: Protein of unknown function (DUF2730); InterPro: IPR020269 This entry represents a family of various hypothetical proteins. The proteins, which include HI1498 and Gp25, from phage Mu, are currently uncharacterised.
Probab=24.67 E-value=3.1e+02 Score=24.94 Aligned_cols=33 Identities=24% Similarity=0.364 Sum_probs=21.1
Q ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007566 296 EVSEMRSSFGELRQKLEYLEAYCEELKKALRQA 328 (598)
Q Consensus 296 Ei~~lk~sl~eL~~KL~~Le~~~~~Lkk~L~q~ 328 (598)
++.+|+..|++++-++..+++....+...++--
T Consensus 66 dv~~L~l~l~el~G~~~~l~~~l~~v~~~~~lL 98 (106)
T PF10805_consen 66 DVHDLQLELAELRGELKELSARLQGVSHQLDLL 98 (106)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 466666667766666666666666666655543
No 202
>PF06818 Fez1: Fez1; InterPro: IPR009638 This family represents the eukaryotic Fez1 protein. Fez1 contains a leucine-zipper region with similarity to the DNA-binding domain of the cAMP-responsive activating-transcription factor 5 []. There is evidence that Fez1 inhibits cancer cell growth through regulation of mitosis, and that its alterations result in abnormal cell growth []. Note that some family members contain more than one copy of this region.; GO: 0005737 cytoplasm, 0016020 membrane
Probab=24.56 E-value=2.5e+02 Score=28.93 Aligned_cols=60 Identities=33% Similarity=0.370 Sum_probs=39.1
Q ss_pred HhhhhhHHHHHHHHHHHHHhhhh--------------hHH----HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007566 269 KDLGILSIETLKRELMEANESRD--------------AAL----MEVSEMRSSFGELRQKLEYLEAYCEELKKALRQA 328 (598)
Q Consensus 269 kt~~i~sie~L~~kL~~a~~~RD--------------aa~----~Ei~~lk~sl~eL~~KL~~Le~~~~~Lkk~L~q~ 328 (598)
|.-+||++..-.+++...++.++ .++ .|+.|.+.....|++|+..++.....|+..+...
T Consensus 29 K~~Eiv~Lr~ql~e~~~~l~~~~~~~~~l~~~~~~K~~ELE~ce~ELqr~~~Ea~lLrekl~~le~El~~Lr~~l~~~ 106 (202)
T PF06818_consen 29 KDSEIVSLRAQLRELRAELRNKESQIQELQDSLRTKQLELEVCENELQRKKNEAELLREKLGQLEAELAELREELACA 106 (202)
T ss_pred HHhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhHhHHHhHHHHHHHhCHHHHhhhhhhhhHHHHHHHHHHHHhh
Confidence 44555555544444444444444 443 2666777777788888888888888888888765
No 203
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=24.50 E-value=3.8e+02 Score=27.29 Aligned_cols=34 Identities=18% Similarity=0.162 Sum_probs=20.9
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007566 295 MEVSEMRSSFGELRQKLEYLEAYCEELKKALRQA 328 (598)
Q Consensus 295 ~Ei~~lk~sl~eL~~KL~~Le~~~~~Lkk~L~q~ 328 (598)
.|+.+++..+..|+...+.++.+...+++.|.+.
T Consensus 56 ~e~~~l~~e~e~L~~~~~~l~~~v~~q~~el~~L 89 (251)
T PF11932_consen 56 AEYRQLEREIENLEVYNEQLERQVASQEQELASL 89 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4666666666666666666666666666655544
No 204
>PF05633 DUF793: Protein of unknown function (DUF793); InterPro: IPR008511 This entry includes Protein BYPASS 1 which is required for normal root and shoot development. Prevents constitutive production of a root mobile carotenoid-derived signaling compound that is capable of arresting shoot and leaf development [, ].
Probab=24.46 E-value=1.9e+02 Score=32.33 Aligned_cols=60 Identities=27% Similarity=0.307 Sum_probs=38.5
Q ss_pred HHHhhhhhHHHHHHHHHHHHHhhhh--hHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007566 267 VFKDLGILSIETLKRELMEANESRD--AALMEVSEMRSSFGELRQKLEYLEAYCEELKKALRQA 328 (598)
Q Consensus 267 llkt~~i~sie~L~~kL~~a~~~RD--aa~~Ei~~lk~sl~eL~~KL~~Le~~~~~Lkk~L~q~ 328 (598)
|||+++- +|...++|.+-++.-. .+-++.++++....+|.+-++.|+.+..-|++++++-
T Consensus 313 LLkEl~~--ve~~vr~L~el~d~~~~p~~~e~~~ev~~~V~EL~~~~~~L~~GLdpLerqVre~ 374 (389)
T PF05633_consen 313 LLKELQQ--VEASVRELHELIDSFQFPLEEEKEEEVREAVEELARVCEALSQGLDPLERQVREV 374 (389)
T ss_pred HHHHHHH--HHHHHHHHHHHHHhccCCcchhHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHH
Confidence 3444433 3445556654444322 1112456678888899999999999999999988864
No 205
>PRK14144 heat shock protein GrpE; Provisional
Probab=24.35 E-value=1.2e+02 Score=30.93 Aligned_cols=32 Identities=13% Similarity=0.053 Sum_probs=23.0
Q ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007566 297 VSEMRSSFGELRQKLEYLEAYCEELKKALRQA 328 (598)
Q Consensus 297 i~~lk~sl~eL~~KL~~Le~~~~~Lkk~L~q~ 328 (598)
+..++..+.+|+.++.++.+..++.++++...
T Consensus 54 i~~le~e~~elkdk~lR~~AefeN~RKR~~kE 85 (199)
T PRK14144 54 LTLAEQKAHENWEKSVRALAELENVRRRMERE 85 (199)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455566677778888888888888877665
No 206
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=24.29 E-value=2.3e+02 Score=32.33 Aligned_cols=18 Identities=6% Similarity=0.222 Sum_probs=10.1
Q ss_pred HHHHHHHHHHHHHHhcCC
Q 007566 381 SVKQFCKTLVAQIEETDH 398 (598)
Q Consensus 381 SIr~FaKlLI~~Mr~Agw 398 (598)
+...|++.+..+|+.-|+
T Consensus 376 ~a~~l~~~v~~~l~~L~m 393 (563)
T TIGR00634 376 AAERLAKRVEQELKALAM 393 (563)
T ss_pred HHHHHHHHHHHHHHhCCC
Confidence 345566666666664444
No 207
>PRK11020 hypothetical protein; Provisional
Probab=24.28 E-value=3.1e+02 Score=26.13 Aligned_cols=48 Identities=23% Similarity=0.333 Sum_probs=27.8
Q ss_pred hHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Q 007566 262 EEVSQVFKDLGILSIETLKRELMEANESRDAALMEVSEMRSSFGELRQKLEYLEAYCEELKK 323 (598)
Q Consensus 262 eE~q~llkt~~i~sie~L~~kL~~a~~~RDaa~~Ei~~lk~sl~eL~~KL~~Le~~~~~Lkk 323 (598)
+|.|+|=..++. +.+||.++...-|++ =|+ ++.++++.|+.+...|+.
T Consensus 5 ~Eiq~L~drLD~-----~~~Klaaa~~rgd~~--~i~-------qf~~E~~~l~k~I~~lk~ 52 (118)
T PRK11020 5 NEIKRLSDRLDA-----IRHKLAAASLRGDAE--KYA-------QFEKEKATLEAEIARLKE 52 (118)
T ss_pred HHHHHHHHHHHH-----HHHHHHHHHhcCCHH--HHH-------HHHHHHHHHHHHHHHHHH
Confidence 455555444444 889999887777775 334 444445555554444443
No 208
>PRK14153 heat shock protein GrpE; Provisional
Probab=24.27 E-value=2.2e+02 Score=28.89 Aligned_cols=33 Identities=21% Similarity=0.317 Sum_probs=28.2
Q ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007566 296 EVSEMRSSFGELRQKLEYLEAYCEELKKALRQA 328 (598)
Q Consensus 296 Ei~~lk~sl~eL~~KL~~Le~~~~~Lkk~L~q~ 328 (598)
||..++..+.+|+.++.++.+..++++|++.+-
T Consensus 41 ei~~l~~e~~elkd~~lR~~AEfeN~rKR~~kE 73 (194)
T PRK14153 41 ETEKCREEIESLKEQLFRLAAEFDNFRKRTARE 73 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566677778899999999999999999998765
No 209
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=24.24 E-value=98 Score=35.93 Aligned_cols=62 Identities=18% Similarity=0.254 Sum_probs=0.0
Q ss_pred HHHHHHhhhhhHHHHHHHHHHHHHhhhhhHHH---------------HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Q 007566 264 VSQVFKDLGILSIETLKRELMEANESRDAALM---------------EVSEMRSSFGELRQKLEYLEAYCEELKKALR 326 (598)
Q Consensus 264 ~q~llkt~~i~sie~L~~kL~~a~~~RDaa~~---------------Ei~~lk~sl~eL~~KL~~Le~~~~~Lkk~L~ 326 (598)
++.+=-+|+. -...-+++++...+.|-.++. |+.++|..+..|+.||.+||..|..|+++|+
T Consensus 251 i~eiRaqye~-~~~~nR~diE~~Y~~kI~~i~~~~~~~~~~~~~~rEEl~~~R~~i~~Lr~klselE~~n~~L~~~I~ 327 (546)
T KOG0977|consen 251 IREIRAQYEA-ISRQNRKDIESWYKRKIQEIRTSAERANVEQNYAREELRRIRSRISGLRAKLSELESRNSALEKRIE 327 (546)
T ss_pred HHHHHHHHHH-HHHHhHHHHHHHHHHHHHHHHhhhccccchhHHHHHHHHHHHhcccchhhhhccccccChhHHHHHH
No 210
>PF06428 Sec2p: GDP/GTP exchange factor Sec2p; InterPro: IPR009449 In Saccharomyces cerevisiae, Sec2p is a GDP/GTP exchange factor for Sec4p, which is required for vesicular transport at the post-Golgi stage of yeast secretion []. It catalyzes the dissociation of GDP from SEC4 and also potently promoting binding of GTP. Activation of SEC4 by SEC2 is needed for the directed transport of vesicles to sites of exocytosis. Binds the Rab GTPase YPT32, but does not have exhange activity on YPT32 [, , ].; PDB: 2EQB_C 2E7S_K 2OCY_A.
Probab=24.12 E-value=1.9e+02 Score=26.52 Aligned_cols=20 Identities=30% Similarity=0.393 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 007566 309 QKLEYLEAYCEELKKALRQA 328 (598)
Q Consensus 309 ~KL~~Le~~~~~Lkk~L~q~ 328 (598)
++-..++.++..|+++|.+.
T Consensus 44 ~e~~~~e~k~~~le~~l~e~ 63 (100)
T PF06428_consen 44 RERAALEEKNEQLEKQLKEK 63 (100)
T ss_dssp HHHHHHHHHHHHHHHCTTHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34455667777788877776
No 211
>cd04790 HTH_Cfa-like_unk Helix-Turn-Helix DNA binding domain of putative Cfa-like transcription regulators. Putative helix-turn-helix (HTH) MerR-like transcription regulator; conserved, Cfa-like, unknown proteins (~172 a.a.). The N-terminal domain of these proteins appears to be related to the HTH domain of Cfa, a cyclopropane fatty acid synthase. These Cfa-like proteins have a unique C-terminal domain with conserved histidines (motif HXXFX7HXXF). Based on sequence similarity of the N-terminal domains, these proteins are predicted to function as transcription regulators that mediate responses to stress in eubacteria. They belong to the MerR superfamily of transcription regulators that promote transcription of various stress regulons by reconfiguring the operator sequence located between the -35 and -10 promoter elements. A typical MerR regulator is comprised of distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their N-terminal domain
Probab=23.81 E-value=4.4e+02 Score=25.72 Aligned_cols=66 Identities=18% Similarity=0.347 Sum_probs=36.9
Q ss_pred CCccchhHHHH--HHHhhhhhHHHHHHHHHHHHHhhhhhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007566 256 PNRTESEEVSQ--VFKDLGILSIETLKRELMEANESRDAALMEVSEMRSSFGELRQKLEYLEAYCEELKKALRQA 328 (598)
Q Consensus 256 ~~~ae~eE~q~--llkt~~i~sie~L~~kL~~a~~~RDaa~~Ei~~lk~sl~eL~~KL~~Le~~~~~Lkk~L~q~ 328 (598)
.....++..+. .||+.|+ ++++++.=|. ..+... ..-++..+.+|+++++.|+.-...|...|+..
T Consensus 40 Y~~~dl~rL~~I~~lr~~G~-sL~eI~~ll~----~~~~~~--~~~L~~~~~~l~~ei~~L~~~~~~l~~ll~~~ 107 (172)
T cd04790 40 YGERDLERLEQICAYRSAGV-SLEDIRSLLQ----QPGDDA--TDVLRRRLAELNREIQRLRQQQRAIATLLKQP 107 (172)
T ss_pred CCHHHHHHHHHHHHHHHcCC-CHHHHHHHHh----cCChhH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344555553 3788898 8877665444 222221 22244556666666666666666666655544
No 212
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=23.74 E-value=3.7e+02 Score=33.85 Aligned_cols=31 Identities=35% Similarity=0.457 Sum_probs=13.5
Q ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Q 007566 296 EVSEMRSSFGELRQKLEYLEAYCEELKKALR 326 (598)
Q Consensus 296 Ei~~lk~sl~eL~~KL~~Le~~~~~Lkk~L~ 326 (598)
|+++|..++.-+++.|..++..|+.|+..+.
T Consensus 823 E~e~l~~e~~~~k~~l~~~~~~~~~l~~e~~ 853 (1174)
T KOG0933|consen 823 EHEELEKEISSLKQQLEQLEKQISSLKSELG 853 (1174)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444444444444444444444443
No 213
>PF06810 Phage_GP20: Phage minor structural protein GP20; InterPro: IPR009636 This family consists of several phage minor structural protein Gp20 sequences and prophage sequences of around 180 residues in length. The function of this family is unknown.; GO: 0005198 structural molecule activity
Probab=23.40 E-value=3.5e+02 Score=26.30 Aligned_cols=50 Identities=20% Similarity=0.332 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHhhhhhHHHHHHHHHh---hHHHHHHHHHHHHHHHH----HHHHHHHH
Q 007566 275 SIETLKRELMEANESRDAALMEVSEMRS---SFGELRQKLEYLEAYCE----ELKKALRQ 327 (598)
Q Consensus 275 sie~L~~kL~~a~~~RDaa~~Ei~~lk~---sl~eL~~KL~~Le~~~~----~Lkk~L~q 327 (598)
.+.+-...|..++..||.. |..|+. -..+|+.+|+.|+..+. +.+.+|.+
T Consensus 24 ~~~~e~~~~k~ql~~~d~~---i~~Lk~~~~d~eeLk~~i~~lq~~~~~~~~~~e~~l~~ 80 (155)
T PF06810_consen 24 KVKEERDNLKTQLKEADKQ---IKDLKKSAKDNEELKKQIEELQAKNKTAKEEYEAKLAQ 80 (155)
T ss_pred HHHHHHHHHHHHHHHHHHH---HHHHHhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 214
>PF10234 Cluap1: Clusterin-associated protein-1; InterPro: IPR019366 This protein of 413 amino acids contains a central coiled-coil domain, possibly the region that binds to clusterin. Cluap1 expression is highest in the nucleus and gradually increases during late S to G2/M phases of the cell cycle and returns to the basal level in the G0/G1 phases. In addition, it is upregulated in colon cancer tissues compared to corresponding non-cancerous mucosa. It thus plays a crucial role in the life of the cell [].
Probab=23.35 E-value=3.6e+02 Score=28.74 Aligned_cols=21 Identities=29% Similarity=0.286 Sum_probs=8.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 007566 306 ELRQKLEYLEAYCEELKKALR 326 (598)
Q Consensus 306 eL~~KL~~Le~~~~~Lkk~L~ 326 (598)
.|+.||+...+..+..+|+|.
T Consensus 194 ~Le~KIekkk~ELER~qKRL~ 214 (267)
T PF10234_consen 194 NLEAKIEKKKQELERNQKRLQ 214 (267)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444443
No 215
>PF15290 Syntaphilin: Golgi-localised syntaxin-1-binding clamp
Probab=23.25 E-value=2.5e+02 Score=30.46 Aligned_cols=39 Identities=21% Similarity=0.331 Sum_probs=26.0
Q ss_pred HHHHHhhhhhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007566 283 LMEANESRDAALMEVSEMRSSFGELRQKLEYLEAYCEELKKALRQA 328 (598)
Q Consensus 283 L~~a~~~RDaa~~Ei~~lk~sl~eL~~KL~~Le~~~~~Lkk~L~q~ 328 (598)
-.++-|+|+.| +.+|.+-|++|..|.+-.+..+..|.+.
T Consensus 105 WIEEECHRVEA-------QLALKEARkEIkQLkQvieTmrssL~ek 143 (305)
T PF15290_consen 105 WIEEECHRVEA-------QLALKEARKEIKQLKQVIETMRSSLAEK 143 (305)
T ss_pred HHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHhhhchh
Confidence 34566777775 3447777777877777777766666544
No 216
>KOG4657 consensus Uncharacterized conserved protein [Function unknown]
Probab=23.19 E-value=4.1e+02 Score=28.08 Aligned_cols=29 Identities=17% Similarity=0.173 Sum_probs=17.7
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Q 007566 298 SEMRSSFGELRQKLEYLEAYCEELKKALR 326 (598)
Q Consensus 298 ~~lk~sl~eL~~KL~~Le~~~~~Lkk~L~ 326 (598)
+.+..++..++++|+.++..++.|+..++
T Consensus 89 ~~ieqeik~~q~elEvl~~n~Q~lkeE~d 117 (246)
T KOG4657|consen 89 MGIEQEIKATQSELEVLRRNLQLLKEEKD 117 (246)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 33445566666677766666666666554
No 217
>PF13863 DUF4200: Domain of unknown function (DUF4200)
Probab=23.15 E-value=5.5e+02 Score=23.02 Aligned_cols=25 Identities=28% Similarity=0.531 Sum_probs=10.9
Q ss_pred HHHHHHhhHHHHHHHHHHHHHHHHH
Q 007566 296 EVSEMRSSFGELRQKLEYLEAYCEE 320 (598)
Q Consensus 296 Ei~~lk~sl~eL~~KL~~Le~~~~~ 320 (598)
||.+|+..|+.|+.++..++.....
T Consensus 82 ei~~l~~~l~~l~~~~~k~e~~l~~ 106 (126)
T PF13863_consen 82 EIKKLKAELEELKSEISKLEEKLEE 106 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444444444444444333
No 218
>KOG2090 consensus Metalloendopeptidase family - mitochondrial intermediate peptidase [Posttranslational modification, protein turnover, chaperones]
Probab=23.08 E-value=1.9e+02 Score=34.28 Aligned_cols=63 Identities=24% Similarity=0.275 Sum_probs=45.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHhhhhccCcccccCcccccchhHHHHHHHHHHHHcCCccCccc
Q 007566 370 GFLQIVSEARLSVKQFCKTLVAQIEETDHTLMDNLNVLLQPYKLSLSSKYSKAVLYHLEAMINQSLYQDFENCVFQ 445 (598)
Q Consensus 370 ~Fl~~l~~ArkSIr~FaKlLI~~Mr~AgwDL~aAansiLeP~vV~~~~~~~K~~kfAlEAyVcr~MF~gFEne~F~ 445 (598)
.|+++.++|.+++-.|.-.| ..+.+|.++++..|+...+..+. + -|.||.+.+.+|||..+-.
T Consensus 112 ~fv~aAe~a~~~~~e~ve~L-----NTn~~LY~~Lk~~l~~~~~l~~~-d-------~e~~v~~lll~DFE~sGIh 174 (704)
T KOG2090|consen 112 EFVEAAEEACRSMFELVESL-----NTNVALYQKLKKVLQDSSRLDDL-D-------PETYVARLLLDDFEKSGIH 174 (704)
T ss_pred HHHHHHHHHHHHHHHHHHHh-----ccCHHHHHHHHHHhcCccccccc-C-------HHHHHHHHHHHHHHhhccc
Confidence 78888888887777666655 67888999998765543222222 2 4778999999999966544
No 219
>PF13600 DUF4140: N-terminal domain of unknown function (DUF4140)
Probab=23.06 E-value=1.7e+02 Score=25.58 Aligned_cols=24 Identities=21% Similarity=0.126 Sum_probs=10.9
Q ss_pred ccccccchhhhhhccccceeeeCC
Q 007566 199 AVITSESENVVRSIRSSNIVVPLT 222 (598)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~~~~pl~ 222 (598)
|.++|+...+...-.+.+.+-+|+
T Consensus 9 A~Vtr~~~v~l~~G~~~i~~~~Lp 32 (104)
T PF13600_consen 9 AQVTREASVSLPAGENEIIFEGLP 32 (104)
T ss_pred eEEEEEEEEEeCCCceEEEEeCCC
Confidence 455555544433333444443443
No 220
>KOG3614 consensus Ca2+/Mg2+-permeable cation channels (LTRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=22.70 E-value=3e+02 Score=35.33 Aligned_cols=67 Identities=15% Similarity=0.202 Sum_probs=47.4
Q ss_pred chhHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 007566 260 ESEEVSQVFKDLGILSIETLKRELMEANESRDAALMEVSEMRSSFGELRQKLEYLEAYCEELKKALRQAA 329 (598)
Q Consensus 260 e~eE~q~llkt~~i~sie~L~~kL~~a~~~RDaa~~Ei~~lk~sl~eL~~KL~~Le~~~~~Lkk~L~q~~ 329 (598)
..+|+.+|. +||.+-+|.+.+|.+.+....+++ .|.+--.-.+..-..|.+++++..-||..+.+++
T Consensus 1109 s~e~~~kl~-~fEe~~vE~~~r~~~~~~~~s~~E--rir~t~~rvd~~~~~l~e~~~r~~~lk~~v~~~~ 1175 (1381)
T KOG3614|consen 1109 SKEENKKLH-TFEEVCVENFLRKREMEQNSSTEE--RIRRTANRVDLILNRLIELEQREKTLKDSVQNSE 1175 (1381)
T ss_pred CHHHHhhhh-HHHHHHHHHHHHHHHHHhccCchh--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 466777777 999999999999998777666553 3332222234444567788888888888888774
No 221
>PRK14159 heat shock protein GrpE; Provisional
Probab=22.56 E-value=2e+02 Score=28.65 Aligned_cols=33 Identities=24% Similarity=0.418 Sum_probs=28.8
Q ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007566 296 EVSEMRSSFGELRQKLEYLEAYCEELKKALRQA 328 (598)
Q Consensus 296 Ei~~lk~sl~eL~~KL~~Le~~~~~Lkk~L~q~ 328 (598)
|+.+++..+.+|+.++.++.+..++++|+...-
T Consensus 31 ~i~~l~~e~~elkd~~lR~~AdfeN~rkR~~rE 63 (176)
T PRK14159 31 EQNKLQKDYDELKDKYMRANAEFENIKKRMEKE 63 (176)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566788888899999999999999999988765
No 222
>PRK14156 heat shock protein GrpE; Provisional
Probab=22.44 E-value=2.5e+02 Score=28.14 Aligned_cols=33 Identities=12% Similarity=0.136 Sum_probs=27.8
Q ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007566 296 EVSEMRSSFGELRQKLEYLEAYCEELKKALRQA 328 (598)
Q Consensus 296 Ei~~lk~sl~eL~~KL~~Le~~~~~Lkk~L~q~ 328 (598)
|+.+++..+.+|+.++.++.+..++++|++.+-
T Consensus 35 ~l~~l~~e~~elkd~~lR~~AEfeN~rKR~~rE 67 (177)
T PRK14156 35 ELELANERADEFENKYLRAHAEMQNIQRRANEE 67 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 466677788899999999999999999988765
No 223
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=22.39 E-value=4.5e+02 Score=31.66 Aligned_cols=28 Identities=14% Similarity=0.252 Sum_probs=15.2
Q ss_pred hhHHHHHHHhhhhhHHHHHHHHHHHHHhh
Q 007566 261 SEEVSQVFKDLGILSIETLKRELMEANES 289 (598)
Q Consensus 261 ~eE~q~llkt~~i~sie~L~~kL~~a~~~ 289 (598)
++..+.++.+.+. -+++|..+|+++.+.
T Consensus 499 i~~A~~~~~~~~~-~~~~li~~L~~~~~~ 526 (771)
T TIGR01069 499 IEQAKTFYGEFKE-EINVLIEKLSALEKE 526 (771)
T ss_pred HHHHHHHHHhhHH-HHHHHHHHHHHHHHH
Confidence 4555566655554 555566666544433
No 224
>PRK09039 hypothetical protein; Validated
Probab=22.30 E-value=3.3e+02 Score=29.54 Aligned_cols=16 Identities=0% Similarity=0.229 Sum_probs=10.4
Q ss_pred HHHHHHHHHHHHHHHH
Q 007566 379 RLSVKQFCKTLVAQIE 394 (598)
Q Consensus 379 rkSIr~FaKlLI~~Mr 394 (598)
..-+..|..-+...|+
T Consensus 189 ~~~l~~~~~~~~~~l~ 204 (343)
T PRK09039 189 VQELNRYRSEFFGRLR 204 (343)
T ss_pred HHHHHHhHHHHHHHHH
Confidence 4455667777777776
No 225
>PF15136 UPF0449: Uncharacterised protein family UPF0449
Probab=22.28 E-value=1.4e+02 Score=27.58 Aligned_cols=23 Identities=30% Similarity=0.398 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 007566 304 FGELRQKLEYLEAYCEELKKALR 326 (598)
Q Consensus 304 l~eL~~KL~~Le~~~~~Lkk~L~ 326 (598)
.+.|++|++.|.+-.++|++.+.
T Consensus 73 ~~~Lkkk~e~L~~age~Le~~i~ 95 (97)
T PF15136_consen 73 RDQLKKKCEELRQAGEELERDIE 95 (97)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Confidence 35788999999999999888764
No 226
>PF05266 DUF724: Protein of unknown function (DUF724); InterPro: IPR007930 This family contains several uncharacterised proteins found exclusively in Arabidopsis thaliana.
Probab=22.17 E-value=3.1e+02 Score=27.56 Aligned_cols=32 Identities=25% Similarity=0.274 Sum_probs=17.2
Q ss_pred eeeC-CCCCCccccCcCCCCC---cccccccccccc
Q 007566 218 VVPL-TDSHSMVHSQPKSRGG---VLSWLFPRLKKK 249 (598)
Q Consensus 218 ~~pl-~~~~~s~~~~~~~~~~---~~~~l~~~~~kk 249 (598)
.||- .+.||-....|.-|-| ++-+.|..+-.+
T Consensus 23 ~vPQ~PHF~pL~~~~e~~REg~A~Glm~~f~~l~e~ 58 (190)
T PF05266_consen 23 KVPQSPHFSPLQEFKEELREGMAVGLMVTFANLAEK 58 (190)
T ss_pred cCCCCCCChhhhcCcHHhhhHHHHHHHHHHHHHHHH
Confidence 4674 4446666666666666 334444444433
No 227
>PRK00846 hypothetical protein; Provisional
Probab=22.11 E-value=5.2e+02 Score=22.86 Aligned_cols=46 Identities=15% Similarity=0.140 Sum_probs=33.1
Q ss_pred HHHHHHHhhhhhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 007566 281 RELMEANESRDAALMEVSEMRSSFGELRQKLEYLEAYCEELKKALRQAA 329 (598)
Q Consensus 281 ~kL~~a~~~RDaa~~Ei~~lk~sl~eL~~KL~~Le~~~~~Lkk~L~q~~ 329 (598)
-+|+..+..-+.. |.+|-..+...++.++.|+.....|..+|++..
T Consensus 16 ~~LE~rlAfQe~t---Ie~LN~~v~~qq~~I~~L~~ql~~L~~rL~~~~ 61 (77)
T PRK00846 16 VELETRLSFQEQA---LTELSEALADARLTGARNAELIRHLLEDLGKVR 61 (77)
T ss_pred HHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3444444455555 555667788888888898888888999998763
No 228
>cd07602 BAR_RhoGAP_OPHN1-like The Bin/Amphiphysin/Rvs (BAR) domain of Oligophrenin1-like Rho GTPase Activating Proteins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. This subfamily is composed of Rho and Rac GTPase activating proteins (GAPs) with similarity to oligophrenin1 (OPHN1). Members contain an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, and a Rho GAP domain. Some members contain a C-terminal SH3 domain. Vertebrates harbor at least three Rho GAPs in this subfamily including OPHN1, GTPase Regulator Associated with Focal adhesion kinase (GRAF), GRAF2, and an uncharacterized protein called GAP10-like. OPHN1, GRAF and GRAF2 show GAP activity towards RhoA and Cdc42. In addition, OPHN1 is active towards Rac. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions. The BAR domains of OPHN1
Probab=22.10 E-value=4.5e+02 Score=26.98 Aligned_cols=29 Identities=14% Similarity=0.237 Sum_probs=23.5
Q ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007566 300 MRSSFGELRQKLEYLEAYCEELKKALRQA 328 (598)
Q Consensus 300 lk~sl~eL~~KL~~Le~~~~~Lkk~L~q~ 328 (598)
....+++|+++|..|...|..|-..++..
T Consensus 7 ~E~ele~l~~~ikkLiK~ck~~i~a~k~~ 35 (207)
T cd07602 7 HEAELERTNKAIKELIKECKNLISATKNL 35 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33457788899999999999988888877
No 229
>cd07705 Ig2_Necl-1 Second immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3)). Ig2_Necl-1: second immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3)). These nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 and Necl-2 have Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue and is important to the formation of synapses, axon bundles, and myel
Probab=22.10 E-value=52 Score=27.84 Aligned_cols=61 Identities=11% Similarity=0.084 Sum_probs=36.2
Q ss_pred HHHhhhhcCCCceeEEecCCCccchhhhhhhccccccCCCCC--eEEEEeeCCceeCCeEEEeEEE
Q 007566 528 LHLLAFSFNPPLGILRVEDNRSFDAHYMEDMLMDRQKSHGSS--RVKIMVMPGFYVQDKVLRCKVL 591 (598)
Q Consensus 528 LH~LAFSFdP~asIFrV~rG~~Fs~vYMEsVv~~~~~~~~~~--~VgftV~PGFkVg~tVIKcrVY 591 (598)
|.|+|..|.|++.|.=-+.|...... ++.+..... .... ..-+.+.|-=.=.+..+.|+|-
T Consensus 4 LtC~a~g~~P~~~ItW~k~g~~l~~~-~~~~~~~~~--~~t~~~~s~l~~~~~~~d~g~~~tC~v~ 66 (83)
T cd07705 4 LRCTSSGSKPAANIKWRKGDQELEGA-PTSVLEDGN--GKTFTVSSSVEFQVTREDDGAEITCSVG 66 (83)
T ss_pred EEEEecCccCCCEeEEEECCEECCCc-ceeEEECCC--CCEEEEEEEEEEEecchhCCCEEEEEEE
Confidence 67899999999999888888766553 233322111 1111 1233334443445688888885
No 230
>COG4467 Regulator of replication initiation timing [Replication, recombination, and repair]
Probab=22.09 E-value=1.3e+02 Score=28.43 Aligned_cols=32 Identities=22% Similarity=0.360 Sum_probs=26.1
Q ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 007566 296 EVSEMRSSFGELRQKLEYLEAYCEELKKALRQ 327 (598)
Q Consensus 296 Ei~~lk~sl~eL~~KL~~Le~~~~~Lkk~L~q 327 (598)
|+..||..++.|=++=..|..+|..|+++|.+
T Consensus 23 el~~lK~~l~~lvEEN~~L~lENe~LR~RL~~ 54 (114)
T COG4467 23 ELGGLKQHLGSLVEENTALRLENEKLRERLGE 54 (114)
T ss_pred HHHHHHHHHHHHHHhhHHHHhhHHHHHHHhCC
Confidence 67778888888888888888888888888865
No 231
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=21.97 E-value=7e+02 Score=23.96 Aligned_cols=67 Identities=18% Similarity=0.321 Sum_probs=0.0
Q ss_pred chhHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 007566 260 ESEEVSQVFKDLGILSIETLKRELMEANESRDAALMEVSEMRSSFGELRQKLEYLEAYCEELKKALRQ 327 (598)
Q Consensus 260 e~eE~q~llkt~~i~sie~L~~kL~~a~~~RDaa~~Ei~~lk~sl~eL~~KL~~Le~~~~~Lkk~L~q 327 (598)
|+++.+..+.+... -++.++..+......+.+.-+++..++....++.+++.++...+.+++..+..
T Consensus 96 el~~l~~~~~~~~~-~l~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~e~~~l~~~~~~~~~~~~~ 162 (191)
T PF04156_consen 96 ELDQLQERIQELES-ELEKLKEDLQELRELLKSVEERLDSLDESIKELEKEIRELQKELQDSREEVQE 162 (191)
T ss_pred HHHHHHHHHHHHHH-HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 232
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=21.87 E-value=4.2e+02 Score=26.67 Aligned_cols=29 Identities=24% Similarity=0.406 Sum_probs=12.1
Q ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Q 007566 297 VSEMRSSFGELRQKLEYLEAYCEELKKAL 325 (598)
Q Consensus 297 i~~lk~sl~eL~~KL~~Le~~~~~Lkk~L 325 (598)
+.+++..+.+++++|+++...++..+..|
T Consensus 79 i~~~~~~i~~~r~~l~~~~~~l~~~~~~l 107 (302)
T PF10186_consen 79 IERLRKRIEQKRERLEELRESLEQRRSRL 107 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444444444444444433333
No 233
>PF10805 DUF2730: Protein of unknown function (DUF2730); InterPro: IPR020269 This entry represents a family of various hypothetical proteins. The proteins, which include HI1498 and Gp25, from phage Mu, are currently uncharacterised.
Probab=21.81 E-value=5.1e+02 Score=23.54 Aligned_cols=26 Identities=27% Similarity=0.355 Sum_probs=11.2
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHH
Q 007566 301 RSSFGELRQKLEYLEAYCEELKKALR 326 (598)
Q Consensus 301 k~sl~eL~~KL~~Le~~~~~Lkk~L~ 326 (598)
+..+..|+-.|.+++.....|+.+|+
T Consensus 64 ~~dv~~L~l~l~el~G~~~~l~~~l~ 89 (106)
T PF10805_consen 64 RDDVHDLQLELAELRGELKELSARLQ 89 (106)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 33344444444444444444444443
No 234
>KOG2080 consensus Uncharacterized conserved protein, contains DENN and RUN domains [Signal transduction mechanisms]
Probab=21.56 E-value=84 Score=38.49 Aligned_cols=68 Identities=24% Similarity=0.426 Sum_probs=43.6
Q ss_pred HHHHHHHH--HHHcCCccCccccCCCCCCCChHHhHHHHHHHHHhccCCChHHHHhcCCCCCc---------hhHHHHHH
Q 007566 426 HLEAMINQ--SLYQDFENCVFQKNGSPKILDPQQDRQAQFASFVSLRNLSWNEVLRKGTKFYS---------EEFSKFCD 494 (598)
Q Consensus 426 AlEAyVcr--~MF~gFEne~F~lng~~s~Ldp~q~r~~~F~qF~~LK~~dp~E~L~~~pk~~~---------s~FskFC~ 494 (598)
.=|+|++| .||+++| .|. +-|.|++.+.+..=..|.+.|-.-.|...|.++. --|+-||+
T Consensus 572 ~revflnrf~~mf~~ye--~fv-------i~~~Q~~eew~tnre~mqnfDK~s~~sdQp~h~~afls~fle~qlfasfid 642 (1295)
T KOG2080|consen 572 YREVFLNRFTQMFADYE--QFV-------IQPQQDLEEWKTNREQMQNFDKMSFLSDQPEHLLAFLSRFLENQLFASFID 642 (1295)
T ss_pred HHHHHHHHHHHHHHHHH--HHh-------hhHHHHHHHHHhhHHHHhhhhhhhhcccChhhHHHHHHHHHHHHHHHHHHH
Confidence 36888888 5898887 444 3466776666655555555555555544444433 34788899
Q ss_pred HHHhhhhh
Q 007566 495 QKMSCIIT 502 (598)
Q Consensus 495 ~KMe~i~f 502 (598)
.|++|++.
T Consensus 643 nli~~~w~ 650 (1295)
T KOG2080|consen 643 NLIECIWA 650 (1295)
T ss_pred HHHHHHhh
Confidence 99998865
No 235
>PF09278 MerR-DNA-bind: MerR, DNA binding; InterPro: IPR015358 This entry represents a family of DNA-binding domains that are predominantly found in the prokaryotic transcriptional regulator MerR. They adopt a structure consisting of a core of three alpha helices, with an architecture that is similar to that of the 'winged helix' fold []. ; PDB: 3QAO_A 1R8D_B 1JBG_A 2VZ4_A 2ZHH_A 2ZHG_A 1Q09_A 1Q08_B 1Q0A_B 1Q07_A ....
Probab=21.21 E-value=4.2e+02 Score=20.97 Aligned_cols=48 Identities=27% Similarity=0.395 Sum_probs=22.7
Q ss_pred HHhhhhhHHHHHHHHHHHHHhhhhhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Q 007566 268 FKDLGILSIETLKRELMEANESRDAALMEVSEMRSSFGELRQKLEYLEAYCEELKK 323 (598)
Q Consensus 268 lkt~~i~sie~L~~kL~~a~~~RDaa~~Ei~~lk~sl~eL~~KL~~Le~~~~~Lkk 323 (598)
+|..|. ++++++.=|. -....+..+.++ ..-|++++++++.+..+|.+
T Consensus 10 ~r~lGf-sL~eI~~~l~-l~~~~~~~~~~~------~~~l~~~~~~i~~~i~~L~~ 57 (65)
T PF09278_consen 10 LRELGF-SLEEIRELLE-LYDQGDPPCADR------RALLEEKLEEIEEQIAELQA 57 (65)
T ss_dssp HHHTT---HHHHHHHHH-HCCSHCHHHHHH------HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHcCC-CHHHHHHHHh-ccCCCCCCHHHH------HHHHHHHHHHHHHHHHHHHH
Confidence 567777 8888777662 112223322221 12344555555555555544
No 236
>cd01110 HTH_SoxR Helix-Turn-Helix DNA binding domain of the SoxR transcription regulator. Helix-turn-helix (HTH) transcriptional regulator SoxR. The global regulator, SoxR, up-regulates gene expression of another transcription activator, SoxS, which directly stimulates the oxidative stress regulon genes in E. coli. The soxRS response renders the bacterial cell resistant to superoxide-generating agents, macrophage-generated nitric oxide, organic solvents, and antibiotics. The SoxR proteins share the N-terminal DNA binding domain with other transcription regulators of the MerR superfamily that promote transcription by reconfiguring the unusually long spacer between the -35 and -10 promoter elements. They also harbor a regulatory C-terminal domain containing an iron-sulfur center.
Probab=21.18 E-value=3.1e+02 Score=25.83 Aligned_cols=67 Identities=16% Similarity=0.294 Sum_probs=36.9
Q ss_pred cchhHHH--HHHHhhhhhHHHHHHHHHHHHHhhhhhHHHHHHHH-HhhHHHHHHHHHHHHHHHHHHHHHHH
Q 007566 259 TESEEVS--QVFKDLGILSIETLKRELMEANESRDAALMEVSEM-RSSFGELRQKLEYLEAYCEELKKALR 326 (598)
Q Consensus 259 ae~eE~q--~llkt~~i~sie~L~~kL~~a~~~RDaa~~Ei~~l-k~sl~eL~~KL~~Le~~~~~Lkk~L~ 326 (598)
..++-.. ..|+..|+ +++++++=|..........+.+..++ ..-+..+++++++|++-...|...+.
T Consensus 42 ~dl~~l~~I~~lr~~G~-sl~eI~~~l~~~~~~~~~~~~~~~~~l~~~~~~l~~~i~~L~~~~~~L~~~i~ 111 (139)
T cd01110 42 DVLRRIAFIKVAQRLGL-SLAEIAEALATLPEDRTPTKADWERLSRAWRDRLDERIAELQQLRDQLDGCIG 111 (139)
T ss_pred HHHHHHHHHHHHHHcCC-CHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3444444 33678887 88887776653222222221121111 22255677777777777777777775
No 237
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=21.16 E-value=4.8e+02 Score=23.39 Aligned_cols=6 Identities=17% Similarity=0.368 Sum_probs=2.4
Q ss_pred HHHHHH
Q 007566 279 LKRELM 284 (598)
Q Consensus 279 L~~kL~ 284 (598)
|..|.+
T Consensus 9 LE~KIq 14 (79)
T PRK15422 9 LEAKVQ 14 (79)
T ss_pred HHHHHH
Confidence 333443
No 238
>PF05278 PEARLI-4: Arabidopsis phospholipase-like protein (PEARLI 4); InterPro: IPR007942 This family contains several phospholipase-like proteins from Arabidopsis thaliana and other members of the Streptophyta which are homologous to PEARLI 4.
Probab=21.15 E-value=3.6e+02 Score=28.88 Aligned_cols=33 Identities=15% Similarity=0.296 Sum_probs=18.5
Q ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007566 296 EVSEMRSSFGELRQKLEYLEAYCEELKKALRQA 328 (598)
Q Consensus 296 Ei~~lk~sl~eL~~KL~~Le~~~~~Lkk~L~q~ 328 (598)
|...+...|++.++++.++..+..+.+.+|.+.
T Consensus 208 ELe~~~EeL~~~Eke~~e~~~~i~e~~~rl~~l 240 (269)
T PF05278_consen 208 ELEELEEELKQKEKEVKEIKERITEMKGRLGEL 240 (269)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444455555555555655555555555555554
No 239
>cd01107 HTH_BmrR Helix-Turn-Helix DNA binding domain of the BmrR transcription regulator. Helix-turn-helix (HTH) multidrug-efflux transporter transcription regulator, BmrR and YdfL of Bacillus subtilis, and related proteins; N-terminal domain. Bmr is a membrane protein which causes the efflux of a variety of toxic substances and antibiotics. BmrR is comprised of two distinct domains that harbor a regulatory (effector-binding) site and an active (DNA-binding) site. The conserved N-terminal domain contains a winged HTH motif that mediates DNA binding, while the C-terminal domain binds coactivating, toxic compounds. BmrR shares the N-terminal DNA binding domain with other transcription regulators of the MerR superfamily that promote transcription by reconfiguring the spacer between the -35 and -10 promoter elements.
Probab=21.03 E-value=2.5e+02 Score=25.03 Aligned_cols=65 Identities=23% Similarity=0.384 Sum_probs=34.2
Q ss_pred CCCccchhHHH--HHHHhhhhhHHHHHHHHHHHHHhhhhhHHHHH-HHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Q 007566 255 SPNRTESEEVS--QVFKDLGILSIETLKRELMEANESRDAALMEV-SEMRSSFGELRQKLEYLEAYCEELKKALR 326 (598)
Q Consensus 255 s~~~ae~eE~q--~llkt~~i~sie~L~~kL~~a~~~RDaa~~Ei-~~lk~sl~eL~~KL~~Le~~~~~Lkk~L~ 326 (598)
-.....++-.. ..||..|+ ++++++.=+. ..+.+ ++ .-++..+.+|+++++.++.--..|+..|+
T Consensus 39 ~Y~~~~i~~l~~I~~lr~~G~-sl~~i~~l~~----~~~~~--~~~~~l~~~~~~l~~~i~~l~~~~~~l~~~l~ 106 (108)
T cd01107 39 YYSAEQLERLNRIKYLRDLGF-PLEEIKEILD----ADNDD--ELRKLLREKLAELEAEIEELQRILRLLEDRLK 106 (108)
T ss_pred ccCHHHHHHHHHHHHHHHcCC-CHHHHHHHHh----cCCHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33444555555 33678887 8877665443 22221 11 12344555666666666655555555443
No 240
>PRK10947 global DNA-binding transcriptional dual regulator H-NS; Provisional
Probab=21.02 E-value=4.8e+02 Score=25.09 Aligned_cols=34 Identities=9% Similarity=0.134 Sum_probs=25.7
Q ss_pred chhHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhH
Q 007566 260 ESEEVSQVFKDLGILSIETLKRELMEANESRDAA 293 (598)
Q Consensus 260 e~eE~q~llkt~~i~sie~L~~kL~~a~~~RDaa 293 (598)
.+.-.+...|+..+-.++++..||...++.|-.+
T Consensus 10 niR~lra~~re~~~e~Lee~~ekl~~vv~er~ee 43 (135)
T PRK10947 10 NIRTLRAQARECTLETLEEMLEKLEVVVNERREE 43 (135)
T ss_pred hHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHH
Confidence 3445566677777777888889998888888874
No 241
>PF01486 K-box: K-box region; InterPro: IPR002487 MADS genes in plants encode key developmental regulators of vegetative and reproductive development. The majority of the plant MADS proteins share a stereotypical MIKC structure. It comprises (from N- to C-terminal) an N-terminal domain, which is, however, present only in a minority of proteins; a MADS domain (see PDOC00302 from PROSITEDOC, IPR002100 from INTERPRO), which is the major determinant of DNA-binding but which also performs dimerisation and accessory factor binding functions; a weakly conserved intervening (I) domain, which constitutes a key molecular determinant for the selective formation of DNA-binding dimers; a keratin-like (K-box) domain, which promotes protein dimerisation; and a C-terminal (C) domain, which is involved in transcriptional activation or in the formation of ternary or quaternary protein complexes. The 80-amino acid K-box domain was originally identified as a region with low but significant similarity to a region of keratin, which is part of the coiled-coil sequence constituting the central rod-shaped domain of keratin [, , ]. The K-box protein-protein interaction domain which mediates heterodimerization of MIKC-type MADS proteins contains several heptad repeats in which the first and the fourth positions are occupied by hydrophobic amino acids suggesting that the K-box domain forms three amphipathic alpha-helices referred to as K1, K2, and K3 [].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=21.02 E-value=3e+02 Score=24.28 Aligned_cols=27 Identities=22% Similarity=0.351 Sum_probs=22.5
Q ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHH
Q 007566 300 MRSSFGELRQKLEYLEAYCEELKKALR 326 (598)
Q Consensus 300 lk~sl~eL~~KL~~Le~~~~~Lkk~L~ 326 (598)
|...+..|++|...|+..|..|.+++.
T Consensus 73 l~~~i~~l~~ke~~l~~en~~L~~~~~ 99 (100)
T PF01486_consen 73 LMEQIEELKKKERELEEENNQLRQKIE 99 (100)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 445577999999999999999998875
No 242
>PF15058 Speriolin_N: Speriolin N terminus
Probab=21.00 E-value=1.7e+02 Score=30.10 Aligned_cols=24 Identities=46% Similarity=0.444 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhh
Q 007566 306 ELRQKLEYLEAYCEELKKALRQAAT 330 (598)
Q Consensus 306 eL~~KL~~Le~~~~~Lkk~L~q~~~ 330 (598)
+|+ |+-+|-.+|++||+.|.|+..
T Consensus 23 eLK-KlVrLirEN~eLksaL~ea~~ 46 (200)
T PF15058_consen 23 ELK-KLVRLIRENHELKSALGEACA 46 (200)
T ss_pred HHH-HHHHHHHHHHHHHHHHHHhhc
Confidence 443 666899999999999999854
No 243
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=20.98 E-value=4.9e+02 Score=31.43 Aligned_cols=28 Identities=18% Similarity=0.178 Sum_probs=14.8
Q ss_pred hhHHHHHHHhhhhhHHHHHHHHHHHHHhh
Q 007566 261 SEEVSQVFKDLGILSIETLKRELMEANES 289 (598)
Q Consensus 261 ~eE~q~llkt~~i~sie~L~~kL~~a~~~ 289 (598)
++..+.++.+=+. .++.|..+|+++.+.
T Consensus 504 i~~A~~~~~~~~~-~~~~li~~l~~~~~~ 531 (782)
T PRK00409 504 IEEAKKLIGEDKE-KLNELIASLEELERE 531 (782)
T ss_pred HHHHHHHHhhhhh-HHHHHHHHHHHHHHH
Confidence 4555556544333 556666666654443
No 244
>TIGR02977 phageshock_pspA phage shock protein A. Members of this family are the phage shock protein PspA, from the phage shock operon. This is a narrower family than the set of PspA and its homologs, sometimes several in a genome, as described by PFAM model pfam04012. PspA appears to maintain the protonmotive force under stress conditions that include overexpression of certain phage secretins, heat shock, ethanol, and protein export defects.
Probab=20.98 E-value=4.1e+02 Score=26.71 Aligned_cols=32 Identities=16% Similarity=0.284 Sum_probs=14.7
Q ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007566 297 VSEMRSSFGELRQKLEYLEAYCEELKKALRQA 328 (598)
Q Consensus 297 i~~lk~sl~eL~~KL~~Le~~~~~Lkk~L~q~ 328 (598)
+.+++.++..++..++.|+.....|+.+|.+.
T Consensus 101 ~~~l~~~~~~~~~~v~~l~~~l~~L~~ki~~~ 132 (219)
T TIGR02977 101 AEALERELAAVEETLAKLQEDIAKLQAKLAEA 132 (219)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444444444443
No 245
>PF14389 Lzipper-MIP1: Leucine-zipper of ternary complex factor MIP1
Probab=20.86 E-value=5.5e+02 Score=22.73 Aligned_cols=28 Identities=21% Similarity=0.196 Sum_probs=15.5
Q ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHH
Q 007566 299 EMRSSFGELRQKLEYLEAYCEELKKALR 326 (598)
Q Consensus 299 ~lk~sl~eL~~KL~~Le~~~~~Lkk~L~ 326 (598)
++-..|+-|+.++-.||.|...|..+|.
T Consensus 58 eLL~EIA~lE~eV~~LE~~v~~L~~~l~ 85 (88)
T PF14389_consen 58 ELLEEIALLEAEVAKLEQKVLSLYRQLF 85 (88)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344455555666666666666655553
No 246
>COG1842 PspA Phage shock protein A (IM30), suppresses sigma54-dependent transcription [Transcription / Signal transduction mechanisms]
Probab=20.78 E-value=3.9e+02 Score=27.58 Aligned_cols=29 Identities=28% Similarity=0.336 Sum_probs=13.9
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Q 007566 298 SEMRSSFGELRQKLEYLEAYCEELKKALR 326 (598)
Q Consensus 298 ~~lk~sl~eL~~KL~~Le~~~~~Lkk~L~ 326 (598)
.+||..+..|+.|+.+++++...|+-+..
T Consensus 116 ~~l~~~~~~Le~Ki~e~~~~~~~l~ar~~ 144 (225)
T COG1842 116 EKLKKQLAALEQKIAELRAKKEALKARKA 144 (225)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555555555555555444444433
No 247
>PF05377 FlaC_arch: Flagella accessory protein C (FlaC); InterPro: IPR008039 Although archaeal flagella appear superficially similar to those of bacteria, they are quite distinct []. In several archaea, the flagellin genes are followed immediately by the flagellar accessory genes flaCDEFGHIJ. The gene products may have a role in translocation, secretion, or assembly of the flagellum. FlaC is a protein whose exact role is unknown but it has been shown to be membrane-associated (by immuno-blotting fractionated cells) [].
Probab=20.73 E-value=3.1e+02 Score=22.96 Aligned_cols=20 Identities=15% Similarity=0.373 Sum_probs=8.6
Q ss_pred HHHHHhhHHHHHHHHHHHHH
Q 007566 297 VSEMRSSFGELRQKLEYLEA 316 (598)
Q Consensus 297 i~~lk~sl~eL~~KL~~Le~ 316 (598)
+.-+|.++.++++.+++++.
T Consensus 16 i~tvk~en~~i~~~ve~i~e 35 (55)
T PF05377_consen 16 INTVKKENEEISESVEKIEE 35 (55)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 44444444444444444333
No 248
>PF02050 FliJ: Flagellar FliJ protein; InterPro: IPR012823 Many flagellar proteins are exported by a flagellum-specific export pathway. Attempts have been made to characterise the apparatus responsible for this process, by designing assays to screen for mutants with export defects []. Experiments involving filament removal from temperature-sensitive flagellar mutants of Salmonella typhimurium have shown that, while most mutants were able to regrow filaments, flhA, fliH, fliI and fliN mutants showed no or greatly reduced regrowth. This suggests that the corresponding gene products are involved in the process of flagellum-specific export. The sequences of fliH, fliI and the adjacent gene, fliJ, have been deduced. FliJ was shown to encode a protein of molecular mass 17,302 Da []. It is a membrane-associated protein that affects chemotactic events, mutations in FliJ result in failure to respond to chemotactic stimuli.; GO: 0003774 motor activity, 0001539 ciliary or flagellar motility, 0006935 chemotaxis, 0009288 bacterial-type flagellum, 0016020 membrane, 0044461 bacterial-type flagellum part; PDB: 3AJW_A.
Probab=20.68 E-value=5.2e+02 Score=21.81 Aligned_cols=42 Identities=14% Similarity=0.209 Sum_probs=25.1
Q ss_pred ccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHH
Q 007566 362 VSEEAMVEGFLQIVSEARLSVKQFCKTLVAQIEETDHTLMDN 403 (598)
Q Consensus 362 vs~~lt~e~Fl~~l~~ArkSIr~FaKlLI~~Mr~AgwDL~aA 403 (598)
+........|+..+..+......-...+-..+....-.+.++
T Consensus 44 ~~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~r~~l~~a 85 (123)
T PF02050_consen 44 VAQLRNYQRYISALEQAIQQQQQELERLEQEVEQAREELQEA 85 (123)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334556667777777777777666655555555444444443
No 249
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=20.49 E-value=4.2e+02 Score=30.85 Aligned_cols=12 Identities=17% Similarity=0.360 Sum_probs=6.2
Q ss_pred Cccchhhhhhhc
Q 007566 548 RSFDAHYMEDML 559 (598)
Q Consensus 548 ~~Fs~vYMEsVv 559 (598)
..+|+.+=+.++
T Consensus 585 ~~lD~~~r~~l~ 596 (650)
T TIGR03185 585 GRLDSSHRENLV 596 (650)
T ss_pred cccChHHHHHHH
Confidence 455665544443
No 250
>PF13815 Dzip-like_N: Iguana/Dzip1-like DAZ-interacting protein N-terminal
Probab=20.47 E-value=4.6e+02 Score=24.03 Aligned_cols=17 Identities=35% Similarity=0.438 Sum_probs=6.6
Q ss_pred HHHHHHHHHHHHHHHHH
Q 007566 306 ELRQKLEYLEAYCEELK 322 (598)
Q Consensus 306 eL~~KL~~Le~~~~~Lk 322 (598)
.|++++.+++..+..|+
T Consensus 98 ~l~~~~~~~~~~~k~lk 114 (118)
T PF13815_consen 98 KLKQKLKKQKEEIKKLK 114 (118)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33333333333333333
No 251
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=20.46 E-value=4.3e+02 Score=27.80 Aligned_cols=47 Identities=28% Similarity=0.337 Sum_probs=20.8
Q ss_pred HHHHHHHHHhhhhhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Q 007566 279 LKRELMEANESRDAALMEVSEMRSSFGELRQKLEYLEAYCEELKKAL 325 (598)
Q Consensus 279 L~~kL~~a~~~RDaa~~Ei~~lk~sl~eL~~KL~~Le~~~~~Lkk~L 325 (598)
|.+++..+.+...+.=.|+.++...+..|+.++..+......+++.|
T Consensus 94 L~~E~~~ak~r~~~le~el~~l~~~~~~l~~~i~~l~~~~~~~e~~~ 140 (239)
T COG1579 94 LNIEIQIAKERINSLEDELAELMEEIEKLEKEIEDLKERLERLEKNL 140 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55555555555444323444444444444444444444443333333
No 252
>PF13815 Dzip-like_N: Iguana/Dzip1-like DAZ-interacting protein N-terminal
Probab=20.40 E-value=5.1e+02 Score=23.75 Aligned_cols=15 Identities=27% Similarity=0.330 Sum_probs=5.6
Q ss_pred HHHHHHHHHHHHHHH
Q 007566 309 QKLEYLEAYCEELKK 323 (598)
Q Consensus 309 ~KL~~Le~~~~~Lkk 323 (598)
++++.++..+.++++
T Consensus 94 ~~~~~l~~~~~~~~~ 108 (118)
T PF13815_consen 94 QEIEKLKQKLKKQKE 108 (118)
T ss_pred HHHHHHHHHHHHHHH
Confidence 333333333333333
No 253
>PF03087 DUF241: Arabidopsis protein of unknown function; InterPro: IPR004320 This family represents plant proteins of unknown function.
Probab=20.23 E-value=9.4e+02 Score=24.61 Aligned_cols=43 Identities=19% Similarity=0.237 Sum_probs=27.2
Q ss_pred hHHHHHHHHHHHHHhhhhhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007566 274 LSIETLKRELMEANESRDAALMEVSEMRSSFGELRQKLEYLEAYCEELKKALRQA 328 (598)
Q Consensus 274 ~sie~L~~kL~~a~~~RDaa~~Ei~~lk~sl~eL~~KL~~Le~~~~~Lkk~L~q~ 328 (598)
+.+.+-.++|+.++|.||.. | ++.++........+++|.+..+
T Consensus 56 l~lKe~v~eLqsalRRr~~~--~----------~~~~i~sy~~~rKk~kK~i~K~ 98 (231)
T PF03087_consen 56 LQLKEHVQELQSALRRRDDG--S----------IESEIASYIRSRKKAKKEIAKL 98 (231)
T ss_pred HHHHHHHHHHHHHHhcccch--h----------HHHHHHHHHHHHHHHHHHHHHH
Confidence 45667789999999999932 1 2244545555555556666555
No 254
>COG0216 PrfA Protein chain release factor A [Translation, ribosomal structure and biogenesis]
Probab=20.20 E-value=4.3e+02 Score=29.47 Aligned_cols=25 Identities=28% Similarity=0.328 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcc
Q 007566 307 LRQKLEYLEAYCEELKKALRQAATHA 332 (598)
Q Consensus 307 L~~KL~~Le~~~~~Lkk~L~q~~~~~ 332 (598)
.+++|.+++....+|+++|+.. +-.
T Consensus 81 a~~Ei~~~~~~~~~le~~L~~l-LlP 105 (363)
T COG0216 81 AEEEIKELEAKIEELEEELKIL-LLP 105 (363)
T ss_pred HHHHHHHHHHHHHHHHHHHHHh-cCC
Confidence 4578999999999999999887 433
No 255
>PF10482 CtIP_N: Tumour-suppressor protein CtIP N-terminal domain; InterPro: IPR019518 CtIP is predominantly a nuclear protein that complexes with both BRCA1 and the BRCA1-associated RING domain protein (BARD1). At the protein level, CtIP expression varies with cell cycle progression in a pattern identical to that of BRCA1. Thus, the steady-state levels of CtIP polypeptides, which remain low in resting cells and G1 cycling cells, increase dramatically as Dividing cells traverse the G1/S boundary. CtIP can potentially modulate the functions ascribed to BRCA1 in transcriptional regulation, DNA repair, and/or cell cycle checkpoint control []. This N-terminal domain carries a coiled-coil region and is essential for homodimerisation of the protein []. The C-terminal domain is family CtIP_C and carries functionally important CxxC and RHR motifs, absence of which lead cells to grow slowly and show hypersensitivity to genotoxins [].
Probab=20.17 E-value=3.9e+02 Score=25.54 Aligned_cols=62 Identities=19% Similarity=0.269 Sum_probs=41.1
Q ss_pred chhHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhHHHHHHHHHh------------hHHHHHHHHHHHHHHHHHHHHHH
Q 007566 260 ESEEVSQVFKDLGILSIETLKRELMEANESRDAALMEVSEMRS------------SFGELRQKLEYLEAYCEELKKAL 325 (598)
Q Consensus 260 e~eE~q~llkt~~i~sie~L~~kL~~a~~~RDaa~~Ei~~lk~------------sl~eL~~KL~~Le~~~~~Lkk~L 325 (598)
...|||.+|++ +|..|..+|.+-++-|=.-++|.++-|. .|..|..+.+.|+..|..|+..|
T Consensus 46 qLreQqk~L~e----~i~~LE~RLRaGlCDRC~VtqE~akK~qqefe~s~~qsLq~i~~L~nE~n~L~eEN~~L~eEl 119 (120)
T PF10482_consen 46 QLREQQKTLHE----NIKVLENRLRAGLCDRCTVTQELAKKKQQEFESSHLQSLQHIFELTNEMNTLKEENKKLKEEL 119 (120)
T ss_pred HHHHHHHHHHH----HHHHHHHHHhcccchHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHh
Confidence 46788888743 3334778888888888877777654221 25566667777777777776654
No 256
>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function.
Probab=20.14 E-value=2.7e+02 Score=30.94 Aligned_cols=45 Identities=18% Similarity=0.149 Sum_probs=30.4
Q ss_pred HHHHHHHhhhhhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007566 281 RELMEANESRDAALMEVSEMRSSFGELRQKLEYLEAYCEELKKALRQA 328 (598)
Q Consensus 281 ~kL~~a~~~RDaa~~Ei~~lk~sl~eL~~KL~~Le~~~~~Lkk~L~q~ 328 (598)
++|+.-+++.+. |-.+++..|.++.+++.+.|-+...|.+.|.+.
T Consensus 130 q~LE~li~~~~E---En~~lqlqL~~l~~e~~Ekeeesq~LnrELaE~ 174 (401)
T PF06785_consen 130 QHLEGLIRHLRE---ENQCLQLQLDALQQECGEKEEESQTLNRELAEA 174 (401)
T ss_pred HHHHHHHHHHHH---HHHHHHHhHHHHHHHHhHhHHHHHHHHHHHHHH
Confidence 345555555555 566777777777777777777777777666665
No 257
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=20.11 E-value=5.4e+02 Score=31.02 Aligned_cols=6 Identities=17% Similarity=0.180 Sum_probs=2.7
Q ss_pred CceeCC
Q 007566 578 GFYVQD 583 (598)
Q Consensus 578 GFkVg~ 583 (598)
|.-.||
T Consensus 653 G~~tgG 658 (1164)
T TIGR02169 653 GAMTGG 658 (1164)
T ss_pred cCccCC
Confidence 344444
No 258
>PRK05689 fliJ flagellar biosynthesis chaperone; Validated
Probab=20.07 E-value=7e+02 Score=23.08 Aligned_cols=46 Identities=24% Similarity=0.393 Sum_probs=35.0
Q ss_pred HHHHHhhhhhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007566 283 LMEANESRDAALMEVSEMRSSFGELRQKLEYLEAYCEELKKALRQA 328 (598)
Q Consensus 283 L~~a~~~RDaa~~Ei~~lk~sl~eL~~KL~~Le~~~~~Lkk~L~q~ 328 (598)
|.-+.+..|.|..+..+++..+...+.+|+.|+.|..+...++.+.
T Consensus 11 l~l~~~~ee~a~~~la~a~~~~~~~~~~L~~L~~y~~~y~~~~~~~ 56 (147)
T PRK05689 11 LDLAEKAEEQAALQLGQARQELQQAEQQLKMLEDYRLEYRQQLNDR 56 (147)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444556667667777778888888889999999998888877765
No 259
>PRK10698 phage shock protein PspA; Provisional
Probab=20.06 E-value=3e+02 Score=28.09 Aligned_cols=36 Identities=11% Similarity=0.141 Sum_probs=26.2
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007566 293 ALMEVSEMRSSFGELRQKLEYLEAYCEELKKALRQA 328 (598)
Q Consensus 293 a~~Ei~~lk~sl~eL~~KL~~Le~~~~~Lkk~L~q~ 328 (598)
....+.+++..+...+..++.|+.....|+.+|.+.
T Consensus 97 ~~~~~~~l~~~~~~~~~~~~~L~~~l~~L~~ki~ea 132 (222)
T PRK10698 97 LTDLIATLEHEVTLVDETLARMKKEIGELENKLSET 132 (222)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334566777777777777777777777777777776
No 260
>PHA01750 hypothetical protein
Probab=20.06 E-value=2.5e+02 Score=24.59 Aligned_cols=50 Identities=24% Similarity=0.381 Sum_probs=35.0
Q ss_pred hHHHHHHHHHHHHHhhhhhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007566 274 LSIETLKRELMEANESRDAALMEVSEMRSSFGELRQKLEYLEAYCEELKKALRQA 328 (598)
Q Consensus 274 ~sie~L~~kL~~a~~~RDaa~~Ei~~lk~sl~eL~~KL~~Le~~~~~Lkk~L~q~ 328 (598)
++|-++--|..... ||+ +.||- +.+|+-|+.+|+++..+-++|++++.+-
T Consensus 19 FaIiqlYlKIKq~l--kdA-vkeIV--~~ELdNL~~ei~~~kikqDnl~~qv~ei 68 (75)
T PHA01750 19 FAIIQLYLKIKQAL--KDA-VKEIV--NSELDNLKTEIEELKIKQDELSRQVEEI 68 (75)
T ss_pred HHHHHHHHHHHHHH--HHH-HHHHH--HHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 34444444555444 444 44554 7889999999999999999998888765
Done!