Query 007567
Match_columns 598
No_of_seqs 355 out of 2510
Neff 6.7
Searched_HMMs 46136
Date Thu Mar 28 12:22:15 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007567.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/007567hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1159 NADP-dependent flavopr 100.0 4.5E-93 9.8E-98 744.5 39.7 454 105-590 1-458 (574)
2 KOG1158 NADP/FAD dependent oxi 100.0 1E-89 2.2E-94 760.6 36.3 478 98-594 40-521 (645)
3 PRK10953 cysJ sulfite reductas 100.0 3.7E-82 8.1E-87 710.6 49.6 420 103-592 60-481 (600)
4 TIGR01931 cysJ sulfite reducta 100.0 1.1E-81 2.4E-86 709.4 48.5 418 104-591 58-477 (597)
5 COG0369 CysJ Sulfite reductase 100.0 2.1E-76 4.6E-81 655.7 38.8 422 103-593 46-469 (587)
6 cd06204 CYPOR NADPH cytochrome 100.0 4.8E-57 1E-61 490.3 31.4 269 312-589 2-290 (416)
7 cd06207 CyPoR_like NADPH cytoc 100.0 1.1E-54 2.4E-59 467.5 29.7 253 320-589 2-255 (382)
8 cd06203 methionine_synthase_re 100.0 2.5E-54 5.5E-59 466.7 29.4 255 320-589 2-266 (398)
9 cd06202 Nitric_oxide_synthase 100.0 4.8E-54 1E-58 465.4 30.7 261 320-589 2-271 (406)
10 cd06206 bifunctional_CYPOR The 100.0 2.1E-51 4.5E-56 442.3 30.0 251 319-589 1-255 (384)
11 PF00667 FAD_binding_1: FAD bi 100.0 1.5E-51 3.3E-56 410.9 20.2 217 309-532 2-219 (219)
12 cd06199 SiR Cytochrome p450- l 100.0 6.7E-48 1.5E-52 411.6 26.6 235 319-590 1-239 (360)
13 PRK06214 sulfite reductase; Pr 100.0 2.1E-47 4.5E-52 422.0 28.0 249 306-590 159-409 (530)
14 PRK09004 FMN-binding protein M 100.0 1.2E-34 2.6E-39 271.6 17.3 144 104-260 1-146 (146)
15 PRK05723 flavodoxin; Provision 100.0 3.1E-34 6.7E-39 270.0 17.5 145 105-261 1-150 (151)
16 PRK08105 flavodoxin; Provision 100.0 5.6E-34 1.2E-38 267.9 17.5 145 104-260 1-147 (149)
17 PF00258 Flavodoxin_1: Flavodo 99.9 1.2E-27 2.6E-32 222.3 12.2 138 109-252 1-143 (143)
18 PRK07308 flavodoxin; Validated 99.9 1.6E-24 3.5E-29 202.8 17.0 140 104-256 1-142 (146)
19 PRK06703 flavodoxin; Provision 99.9 1.7E-22 3.8E-27 190.0 17.4 145 104-261 1-148 (151)
20 KOG1160 Fe-S oxidoreductase [E 99.9 1.2E-22 2.6E-27 211.5 13.9 144 104-262 46-194 (601)
21 PRK12359 flavodoxin FldB; Prov 99.9 9.1E-22 2E-26 188.9 18.4 144 105-263 1-171 (172)
22 PRK09271 flavodoxin; Provision 99.9 8.8E-21 1.9E-25 180.5 15.8 142 105-260 1-147 (160)
23 PRK06756 flavodoxin; Provision 99.8 6.5E-20 1.4E-24 172.0 17.0 137 104-253 1-137 (148)
24 TIGR01754 flav_RNR ribonucleot 99.8 3.8E-20 8.1E-25 172.2 14.1 136 105-256 1-139 (140)
25 TIGR01752 flav_long flavodoxin 99.8 8.4E-20 1.8E-24 175.0 16.9 140 106-260 1-166 (167)
26 TIGR01753 flav_short flavodoxi 99.8 1.1E-19 2.4E-24 167.6 15.4 135 107-255 1-138 (140)
27 PLN03115 ferredoxin--NADP(+) r 99.8 1.5E-18 3.3E-23 185.2 17.2 152 309-588 84-239 (367)
28 COG0716 FldA Flavodoxins [Ener 99.8 5.3E-18 1.2E-22 159.8 15.6 143 104-259 1-150 (151)
29 PRK09267 flavodoxin FldA; Vali 99.8 1.1E-17 2.5E-22 160.2 16.9 142 104-260 1-167 (169)
30 cd06182 CYPOR_like NADPH cytoc 99.7 1.5E-15 3.3E-20 156.3 16.2 92 492-589 48-140 (267)
31 TIGR03224 benzo_boxA benzoyl-C 99.6 4.8E-15 1E-19 161.3 17.5 153 309-589 136-292 (411)
32 TIGR00333 nrdI ribonucleoside- 99.6 1.1E-15 2.5E-20 138.9 10.2 92 109-227 1-93 (125)
33 cd06201 SiR_like2 Cytochrome p 99.6 2.7E-14 5.8E-19 148.7 19.0 78 492-587 100-178 (289)
34 PRK02551 flavoprotein NrdI; Pr 99.6 5.8E-15 1.2E-19 138.8 10.0 141 104-256 1-146 (154)
35 PRK11921 metallo-beta-lactamas 99.6 1.7E-14 3.7E-19 156.4 14.8 146 102-259 245-392 (394)
36 PRK05452 anaerobic nitric oxid 99.6 4.5E-14 9.8E-19 156.4 15.3 146 103-261 250-397 (479)
37 PRK05569 flavodoxin; Provision 99.5 2.5E-13 5.4E-18 126.1 15.2 116 104-236 1-118 (141)
38 PRK05568 flavodoxin; Provision 99.5 2.3E-13 5E-18 126.4 14.8 114 104-235 1-116 (142)
39 PRK03600 nrdI ribonucleotide r 99.5 1.2E-13 2.7E-18 127.4 11.9 124 106-258 2-130 (134)
40 PLN03116 ferredoxin--NADP+ red 99.4 3.3E-13 7.2E-18 141.6 11.3 154 310-589 19-181 (307)
41 cd06200 SiR_like1 Cytochrome p 99.4 2.4E-13 5.3E-18 138.1 9.3 98 480-589 35-134 (245)
42 cd06208 CYPOR_like_FNR These f 99.4 5.1E-13 1.1E-17 138.8 11.6 95 489-589 61-160 (286)
43 PRK06242 flavodoxin; Provision 99.3 2.4E-11 5.2E-16 113.8 12.3 108 105-236 1-109 (150)
44 PRK13289 bifunctional nitric o 99.2 2.3E-11 5.1E-16 131.9 8.8 82 491-589 204-286 (399)
45 cd00322 FNR_like Ferredoxin re 99.2 6.3E-11 1.4E-15 117.3 9.6 85 490-590 39-123 (223)
46 PRK10926 ferredoxin-NADP reduc 99.2 4.2E-11 9E-16 122.0 8.5 80 492-588 49-130 (248)
47 cd06188 NADH_quinone_reductase 99.2 7.9E-11 1.7E-15 122.1 10.2 90 492-589 86-175 (283)
48 COG1018 Hmp Flavodoxin reducta 99.2 6.3E-11 1.4E-15 121.8 9.1 84 491-590 52-136 (266)
49 TIGR01941 nqrF NADH:ubiquinone 99.2 1.1E-10 2.4E-15 127.2 10.3 91 490-588 204-294 (405)
50 PRK05464 Na(+)-translocating N 99.2 1.1E-10 2.3E-15 127.5 10.1 92 490-589 208-299 (409)
51 PRK07609 CDP-6-deoxy-delta-3,4 99.1 7.1E-11 1.5E-15 125.5 8.1 95 480-590 135-230 (339)
52 cd06189 flavin_oxioreductase N 99.1 1.9E-10 4.2E-15 114.8 8.6 96 479-590 28-124 (224)
53 cd06210 MMO_FAD_NAD_binding Me 99.1 2.5E-10 5.5E-15 114.7 9.0 84 491-590 50-134 (236)
54 cd06211 phenol_2-monooxygenase 99.1 2.3E-10 4.9E-15 115.5 8.6 84 491-590 51-135 (238)
55 cd06190 T4MO_e_transfer_like T 99.1 2.2E-10 4.7E-15 114.9 8.5 94 480-589 27-122 (232)
56 TIGR01755 flav_wrbA NAD(P)H:qu 99.1 1.7E-09 3.8E-14 106.5 14.6 126 106-234 2-141 (197)
57 cd06191 FNR_iron_sulfur_bindin 99.1 2.6E-10 5.7E-15 114.3 8.8 82 491-589 45-127 (231)
58 PRK10684 HCP oxidoreductase, N 99.1 2.3E-10 5E-15 121.4 8.7 82 492-589 54-136 (332)
59 cd06187 O2ase_reductase_like T 99.1 2.6E-10 5.7E-15 113.5 8.5 84 491-590 40-124 (224)
60 PRK03767 NAD(P)H:quinone oxido 99.1 2.4E-09 5.2E-14 105.7 15.1 127 104-234 1-142 (200)
61 cd06209 BenDO_FAD_NAD Benzoate 99.1 3.3E-10 7.2E-15 113.4 9.1 81 492-590 47-128 (228)
62 PRK05713 hypothetical protein; 99.1 2.3E-10 4.9E-15 120.4 8.2 87 488-590 130-218 (312)
63 cd06184 flavohem_like_fad_nad_ 99.1 2.9E-10 6.2E-15 115.2 8.6 82 491-589 56-138 (247)
64 cd06212 monooxygenase_like The 99.1 4.1E-10 9E-15 113.0 9.6 84 491-590 45-129 (232)
65 cd06194 FNR_N-term_Iron_sulfur 99.1 4.1E-10 8.8E-15 112.2 8.9 95 480-590 27-123 (222)
66 PRK11104 hemG protoporphyrinog 99.0 8.7E-10 1.9E-14 106.8 10.1 87 105-207 1-87 (177)
67 cd06197 FNR_like_2 FAD/NAD(P) 99.0 4.7E-10 1E-14 112.2 8.5 87 491-589 59-150 (220)
68 cd06213 oxygenase_e_transfer_s 99.0 5.7E-10 1.2E-14 111.6 9.0 83 491-590 43-126 (227)
69 PTZ00274 cytochrome b5 reducta 99.0 4.8E-10 1E-14 118.6 8.6 80 492-589 103-184 (325)
70 PRK07116 flavodoxin; Provision 99.0 2.4E-09 5.1E-14 102.0 12.2 133 104-256 2-158 (160)
71 cd06214 PA_degradation_oxidore 99.0 6.4E-10 1.4E-14 112.0 8.8 82 491-589 50-133 (241)
72 PF07972 Flavodoxin_NdrI: NrdI 99.0 1.2E-09 2.5E-14 99.1 9.3 115 109-252 1-120 (122)
73 PRK08051 fre FMN reductase; Va 99.0 5.5E-10 1.2E-14 112.5 8.0 86 488-589 41-127 (232)
74 cd06216 FNR_iron_sulfur_bindin 99.0 7.3E-10 1.6E-14 112.0 8.6 83 492-589 64-147 (243)
75 cd06195 FNR1 Ferredoxin-NADP+ 99.0 7.3E-10 1.6E-14 111.9 8.6 82 491-589 43-126 (241)
76 cd06215 FNR_iron_sulfur_bindin 99.0 8.2E-10 1.8E-14 110.5 8.4 84 491-590 45-129 (231)
77 PRK08221 anaerobic sulfite red 99.0 8.5E-10 1.8E-14 113.4 8.1 90 480-589 36-126 (263)
78 PRK11872 antC anthranilate dio 99.0 9.9E-10 2.1E-14 117.0 8.6 81 492-589 153-234 (340)
79 PRK08345 cytochrome-c3 hydroge 99.0 1E-09 2.2E-14 114.4 8.0 93 480-590 41-134 (289)
80 cd06196 FNR_like_1 Ferredoxin 99.0 1.3E-09 2.9E-14 108.2 8.5 79 491-589 46-124 (218)
81 cd06218 DHOD_e_trans FAD/NAD b 99.0 2.2E-09 4.9E-14 109.1 10.1 80 490-588 42-122 (246)
82 TIGR02160 PA_CoA_Oxy5 phenylac 99.0 1.4E-09 3.1E-14 116.1 8.7 81 492-589 51-134 (352)
83 cd06185 PDR_like Phthalate dio 98.9 2E-09 4.4E-14 106.2 8.4 94 480-588 29-122 (211)
84 cd06198 FNR_like_3 NAD(P) bind 98.9 3E-09 6.6E-14 105.5 9.1 82 490-590 39-121 (216)
85 cd06183 cyt_b5_reduct_like Cyt 98.9 3.1E-09 6.8E-14 106.2 8.7 84 490-589 45-129 (234)
86 TIGR02911 sulfite_red_B sulfit 98.9 2.4E-09 5.3E-14 109.9 7.8 89 480-588 34-123 (261)
87 cd06217 FNR_iron_sulfur_bindin 98.9 3.9E-09 8.4E-14 105.9 8.4 83 492-590 50-133 (235)
88 PRK00054 dihydroorotate dehydr 98.9 4.7E-09 1E-13 106.9 9.0 77 491-588 49-126 (250)
89 cd06221 sulfite_reductase_like 98.9 3.7E-09 8E-14 108.0 8.1 84 488-589 39-123 (253)
90 cd06220 DHOD_e_trans_like2 FAD 98.8 5.2E-09 1.1E-13 105.4 7.4 85 480-588 27-112 (233)
91 COG0426 FpaA Uncharacterized f 98.8 2.8E-08 6E-13 105.9 12.5 116 106-235 248-363 (388)
92 PF12724 Flavodoxin_5: Flavodo 98.8 4.4E-08 9.6E-13 91.5 12.5 86 108-209 1-86 (143)
93 PTZ00319 NADH-cytochrome B5 re 98.8 8.8E-09 1.9E-13 107.9 8.1 91 491-588 85-190 (300)
94 cd06192 DHOD_e_trans_like FAD/ 98.8 1.5E-08 3.3E-13 102.6 9.1 83 489-589 40-122 (243)
95 COG1780 NrdI Protein involved 98.8 3.8E-08 8.2E-13 89.5 9.4 124 106-260 2-133 (141)
96 cd06186 NOX_Duox_like_FAD_NADP 98.7 3.3E-08 7.2E-13 97.5 8.6 90 490-589 42-131 (210)
97 cd06193 siderophore_interactin 98.7 3.4E-08 7.5E-13 99.6 8.1 82 491-588 63-144 (235)
98 PF03358 FMN_red: NADPH-depend 98.7 3.6E-07 7.7E-12 85.6 13.6 125 105-235 1-142 (152)
99 PRK06222 ferredoxin-NADP(+) re 98.6 7.5E-08 1.6E-12 100.0 8.5 80 491-589 43-123 (281)
100 cd06219 DHOD_e_trans_like1 FAD 98.6 8E-08 1.7E-12 97.8 8.4 80 491-589 42-122 (248)
101 COG0543 UbiB 2-polyprenylpheno 98.6 1.3E-07 2.9E-12 96.7 8.5 98 477-590 36-133 (252)
102 PRK05802 hypothetical protein; 98.6 1.2E-07 2.7E-12 100.2 8.1 82 491-590 112-198 (320)
103 PF12641 Flavodoxin_3: Flavodo 98.6 2.5E-07 5.4E-12 88.2 9.3 96 108-227 1-98 (160)
104 COG2871 NqrF Na+-transporting 98.5 8.5E-08 1.8E-12 96.9 5.7 88 492-587 211-298 (410)
105 PLN02252 nitrate reductase [NA 98.5 2.9E-07 6.3E-12 108.9 9.4 92 491-589 682-783 (888)
106 PTZ00306 NADH-dependent fumara 98.4 7.3E-07 1.6E-11 109.2 8.3 80 492-588 966-1055(1167)
107 COG4635 HemG Flavodoxin [Energ 98.3 1.3E-06 2.8E-11 81.6 7.2 111 105-231 1-114 (175)
108 PF12682 Flavodoxin_4: Flavodo 98.3 4E-06 8.7E-11 79.7 9.7 132 106-256 1-156 (156)
109 PLN02631 ferric-chelate reduct 98.2 3.9E-06 8.5E-11 96.6 9.5 86 490-590 351-438 (699)
110 KOG0534 NADH-cytochrome b-5 re 98.2 3.7E-06 8E-11 86.9 8.1 83 491-589 99-181 (286)
111 PRK12778 putative bifunctional 98.2 3.1E-06 6.7E-11 99.5 8.3 80 491-589 43-123 (752)
112 PLN02292 ferric-chelate reduct 98.2 4.9E-06 1.1E-10 95.9 9.3 89 490-589 368-456 (702)
113 PRK10569 NAD(P)H-dependent FMN 98.2 0.0001 2.2E-09 72.4 16.9 120 105-233 1-133 (191)
114 PLN02844 oxidoreductase/ferric 98.1 9.7E-06 2.1E-10 93.8 8.7 89 490-589 355-448 (722)
115 PRK00170 azoreductase; Reviewe 98.0 0.00025 5.4E-09 69.5 17.2 156 104-261 1-196 (201)
116 PRK06934 flavodoxin; Provision 98.0 0.00013 2.8E-09 73.1 14.5 135 104-256 59-217 (221)
117 PRK01355 azoreductase; Reviewe 98.0 0.00034 7.3E-09 69.1 17.3 159 104-263 1-195 (199)
118 TIGR03567 FMN_reduc_SsuE FMN r 98.0 0.00027 5.9E-09 68.0 15.8 121 106-235 1-134 (171)
119 PRK12779 putative bifunctional 97.9 3.5E-05 7.6E-10 92.4 8.7 81 491-589 692-775 (944)
120 TIGR03566 FMN_reduc_MsuE FMN r 97.8 0.0005 1.1E-08 66.3 15.0 120 106-233 1-135 (174)
121 PRK09739 hypothetical protein; 97.8 0.00075 1.6E-08 66.5 16.1 157 104-263 3-197 (199)
122 PF02525 Flavodoxin_2: Flavodo 97.8 0.0013 2.7E-08 64.7 16.6 154 105-260 1-199 (199)
123 PRK13556 azoreductase; Provisi 97.7 0.0026 5.6E-08 63.2 17.5 156 104-261 1-202 (208)
124 PRK12775 putative trifunctiona 97.6 0.00015 3.2E-09 87.8 8.1 81 491-590 43-125 (1006)
125 COG4097 Predicted ferric reduc 97.5 0.00015 3.2E-09 76.5 6.6 80 489-588 259-339 (438)
126 KOG3378 Globins and related he 97.5 0.0001 2.2E-09 74.6 4.0 81 493-587 202-285 (385)
127 COG0655 WrbA Multimeric flavod 97.2 0.0038 8.3E-08 61.9 12.1 123 106-233 5-148 (207)
128 TIGR02690 resist_ArsH arsenica 96.6 0.05 1.1E-06 54.6 14.3 128 101-233 23-161 (219)
129 PRK13555 azoreductase; Provisi 96.5 0.22 4.8E-06 49.6 18.0 128 104-232 1-174 (208)
130 PRK04930 glutathione-regulated 96.5 0.25 5.4E-06 48.4 17.9 158 102-263 3-178 (184)
131 PF00970 FAD_binding_6: Oxidor 96.4 0.0055 1.2E-07 53.0 5.2 52 491-558 47-98 (99)
132 PRK06567 putative bifunctional 94.7 0.098 2.1E-06 62.7 8.6 70 491-580 839-909 (1028)
133 COG0431 Predicted flavoprotein 94.2 0.68 1.5E-05 45.1 12.0 123 105-235 1-136 (184)
134 PRK00871 glutathione-regulated 93.6 2.5 5.5E-05 41.0 14.5 151 107-261 2-168 (176)
135 KOG3135 1,4-benzoquinone reduc 93.5 0.2 4.3E-06 47.7 6.4 126 105-238 2-145 (203)
136 KOG0039 Ferric reductase, NADH 91.8 0.35 7.5E-06 56.3 6.9 98 489-594 397-496 (646)
137 KOG0560 Sulfite reductase (fer 91.0 0.11 2.3E-06 56.9 1.5 63 203-265 1-71 (638)
138 COG2249 MdaB Putative NADPH-qu 90.1 8.8 0.00019 37.7 14.0 158 105-263 1-187 (189)
139 KOG1160 Fe-S oxidoreductase [E 81.4 3.1 6.7E-05 45.5 6.1 146 104-256 357-511 (601)
140 PRK02261 methylaspartate mutas 80.6 48 0.001 30.7 14.2 130 105-257 2-134 (137)
141 PLN03116 ferredoxin--NADP+ red 76.9 4.8 0.0001 42.3 6.0 7 566-572 260-266 (307)
142 TIGR00640 acid_CoA_mut_C methy 75.9 65 0.0014 29.7 12.5 112 106-237 2-113 (132)
143 cd06208 CYPOR_like_FNR These f 72.1 8 0.00017 40.2 6.1 51 310-361 3-53 (286)
144 cd02072 Glm_B12_BD B12 binding 71.8 69 0.0015 29.5 11.4 113 109-237 2-116 (128)
145 TIGR01501 MthylAspMutase methy 68.6 1E+02 0.0022 28.7 13.1 128 108-255 3-130 (134)
146 cd00578 L-fuc_L-ara-isomerases 65.6 1.1E+02 0.0023 34.1 13.6 130 106-255 2-151 (452)
147 TIGR02667 moaB_proteo molybden 61.7 10 0.00022 36.3 4.0 57 196-252 2-58 (163)
148 PF08357 SEFIR: SEFIR domain; 47.6 56 0.0012 30.1 6.5 64 105-168 1-67 (150)
149 cd00758 MoCF_BD MoCF_BD: molyb 47.4 19 0.00042 32.9 3.3 53 200-252 1-55 (133)
150 cd05566 PTS_IIB_galactitol PTS 45.5 67 0.0014 26.9 6.1 29 105-133 1-29 (89)
151 COG2375 ViuB Siderophore-inter 45.5 97 0.0021 32.2 8.2 83 489-587 84-166 (265)
152 PF00970 FAD_binding_6: Oxidor 42.3 60 0.0013 27.5 5.4 38 318-360 2-41 (99)
153 KOG4530 Predicted flavoprotein 40.7 59 0.0013 31.2 5.3 53 157-211 84-136 (199)
154 cd02067 B12-binding B12 bindin 40.1 2.6E+02 0.0056 24.5 11.3 109 109-237 2-110 (119)
155 cd05563 PTS_IIB_ascorbate PTS_ 39.9 84 0.0018 26.1 5.8 40 106-145 1-40 (86)
156 TIGR01917 gly_red_sel_B glycin 39.3 2.5E+02 0.0054 31.2 10.5 97 116-263 319-420 (431)
157 TIGR00177 molyb_syn molybdenum 38.1 31 0.00066 32.1 3.1 54 200-253 2-64 (144)
158 cd06578 HemD Uroporphyrinogen- 37.4 1.9E+02 0.0042 28.1 8.9 51 163-235 176-226 (239)
159 PRK09622 porA pyruvate flavodo 36.7 3.7E+02 0.0081 29.6 11.7 110 103-223 267-382 (407)
160 cd00886 MogA_MoaB MogA_MoaB fa 36.6 45 0.00098 31.2 4.0 54 199-252 1-56 (152)
161 PRK15083 PTS system mannitol-s 35.2 1.8E+02 0.0038 34.2 9.4 31 103-133 377-407 (639)
162 cd01075 NAD_bind_Leu_Phe_Val_D 33.8 81 0.0017 31.0 5.5 32 194-233 24-55 (200)
163 PF06283 ThuA: Trehalose utili 33.4 1.6E+02 0.0034 29.1 7.5 75 106-188 1-80 (217)
164 PF02826 2-Hacid_dh_C: D-isome 32.7 88 0.0019 30.0 5.4 34 193-234 31-64 (178)
165 cd06200 SiR_like1 Cytochrome p 32.6 70 0.0015 32.3 4.9 36 326-361 8-44 (245)
166 PF06753 Bradykinin: Bradykini 31.8 11 0.00025 22.4 -0.5 10 574-583 6-15 (19)
167 PF03908 Sec20: Sec20; InterP 31.3 47 0.001 28.5 2.9 19 58-76 73-91 (92)
168 cd00133 PTS_IIB PTS_IIB: subun 31.2 97 0.0021 24.6 4.8 28 106-133 1-28 (84)
169 cd05211 NAD_bind_Glu_Leu_Phe_V 30.3 74 0.0016 31.9 4.6 33 194-234 19-51 (217)
170 PRK09004 FMN-binding protein M 29.9 3.4E+02 0.0074 25.2 8.7 92 161-263 3-112 (146)
171 PRK11727 23S rRNA mA1618 methy 29.6 42 0.0009 35.8 2.8 24 559-582 110-134 (321)
172 cd06212 monooxygenase_like The 29.5 1E+02 0.0022 30.4 5.5 40 317-361 2-42 (232)
173 TIGR01918 various_sel_PB selen 29.3 4.1E+02 0.0088 29.6 10.2 77 163-263 339-420 (431)
174 cd07371 2A5CPDO_AB The alpha a 28.7 3E+02 0.0066 28.3 9.0 104 118-228 86-205 (268)
175 PF08021 FAD_binding_9: Sidero 28.6 45 0.00098 30.0 2.5 54 489-557 64-117 (117)
176 PRK10310 PTS system galactitol 28.4 1.1E+02 0.0023 26.4 4.7 30 105-134 3-32 (94)
177 cd02071 MM_CoA_mut_B12_BD meth 27.7 4.4E+02 0.0095 23.5 10.7 109 109-238 2-111 (122)
178 COG2185 Sbm Methylmalonyl-CoA 27.6 5.3E+02 0.011 24.3 9.8 111 104-237 12-123 (143)
179 cd05567 PTS_IIB_mannitol PTS_I 27.5 1.2E+02 0.0027 25.4 4.8 41 105-145 1-41 (87)
180 cd05009 SIS_GlmS_GlmD_2 SIS (S 27.1 1.7E+02 0.0036 26.6 6.1 71 107-188 17-87 (153)
181 cd07373 2A5CPDO_A The alpha su 27.0 3.5E+02 0.0075 27.9 9.0 86 118-211 89-179 (271)
182 smart00852 MoCF_biosynth Proba 26.5 51 0.0011 30.0 2.5 51 203-253 2-55 (135)
183 PRK05907 hypothetical protein; 26.4 7.9E+02 0.017 26.0 12.7 126 106-261 19-151 (311)
184 PRK07168 bifunctional uroporph 25.8 2.1E+02 0.0045 32.3 7.5 88 121-232 262-351 (474)
185 PF08693 SKG6: Transmembrane a 25.6 44 0.00096 24.5 1.4 14 64-77 26-39 (40)
186 PRK13609 diacylglycerol glucos 25.5 1.2E+02 0.0026 32.3 5.5 40 103-143 3-42 (380)
187 PRK15438 erythronate-4-phospha 25.3 2.1E+02 0.0046 31.3 7.3 34 193-234 111-144 (378)
188 PF04689 S1FA: DNA binding pro 25.3 95 0.0021 25.1 3.3 25 55-79 18-43 (69)
189 PRK13608 diacylglycerol glucos 24.8 1.3E+02 0.0028 32.5 5.7 43 103-145 4-47 (391)
190 TIGR01478 STEVOR variant surfa 24.0 1.3E+02 0.0027 31.6 4.9 15 14-28 220-237 (295)
191 TIGR00853 pts-lac PTS system, 23.8 1.3E+02 0.0028 26.0 4.3 31 104-135 3-33 (95)
192 cd07363 45_DOPA_Dioxygenase Th 23.7 3.7E+02 0.008 27.4 8.4 84 115-211 77-163 (253)
193 PF02875 Mur_ligase_C: Mur lig 23.6 1.5E+02 0.0033 24.8 4.7 50 173-231 21-74 (91)
194 PHA03164 hypothetical protein; 23.6 2.2E+02 0.0048 23.9 5.3 26 43-68 45-74 (88)
195 COG1587 HemD Uroporphyrinogen- 23.6 2.3E+02 0.0051 28.6 6.9 54 158-234 174-227 (248)
196 PF09651 Cas_APE2256: CRISPR-a 23.5 1.3E+02 0.0028 27.9 4.5 37 107-145 24-60 (136)
197 PF11074 DUF2779: Domain of un 22.4 89 0.0019 28.8 3.2 53 419-473 54-116 (130)
198 cd06268 PBP1_ABC_transporter_L 22.4 7.3E+02 0.016 24.2 11.0 96 104-214 135-230 (298)
199 PRK05752 uroporphyrinogen-III 22.4 4E+02 0.0087 26.9 8.4 57 155-235 51-107 (255)
200 cd06578 HemD Uroporphyrinogen- 22.3 7.1E+02 0.015 24.0 10.2 57 156-235 46-102 (239)
201 COG3414 SgaB Phosphotransferas 22.1 3.2E+02 0.007 23.7 6.4 58 104-170 1-58 (93)
202 cd06196 FNR_like_1 Ferredoxin 21.8 1.5E+02 0.0032 29.0 4.9 40 317-362 2-41 (218)
203 cd00885 cinA Competence-damage 21.4 1E+02 0.0022 29.6 3.6 54 200-253 1-56 (170)
204 PF00994 MoCF_biosynth: Probab 21.2 45 0.00098 30.7 1.0 53 202-254 1-55 (144)
205 PRK09212 pyruvate dehydrogenas 20.9 2.9E+02 0.0063 29.4 7.2 78 102-188 200-278 (327)
206 KOG1541 Predicted protein carb 20.7 59 0.0013 33.0 1.8 21 557-577 44-64 (270)
207 COG1587 HemD Uroporphyrinogen- 20.7 4.8E+02 0.01 26.3 8.5 59 155-236 46-104 (248)
208 COG1490 Dtd D-Tyr-tRNAtyr deac 20.6 6.7E+02 0.015 23.6 8.4 90 103-205 23-126 (145)
209 PLN02928 oxidoreductase family 20.3 4.6E+02 0.01 28.2 8.7 32 195-234 156-187 (347)
210 COG4123 Predicted O-methyltran 20.2 63 0.0014 33.2 1.9 21 564-586 45-65 (248)
211 PRK09548 PTS system ascorbate- 20.2 3.6E+02 0.0077 31.4 8.0 45 103-147 505-549 (602)
212 PRK00257 erythronate-4-phospha 20.1 2.5E+02 0.0054 30.7 6.6 34 193-234 111-144 (381)
No 1
>KOG1159 consensus NADP-dependent flavoprotein reductase [Energy production and conversion]
Probab=100.00 E-value=4.5e-93 Score=744.55 Aligned_cols=454 Identities=31% Similarity=0.527 Sum_probs=392.5
Q ss_pred ceEEEEEeCCCchHHHHHHHHHHHHHhhcCCceeEEEcCCCCCCcchHHHHhhccCCeEEEEEecCCCCCcchHHHHHHH
Q 007567 105 QKVTIFFGTQTGTAEGFAKALADEARARYDKAIFKVVDIDDYADEEDEYEEKLKKENIVFFFLATYGDGEPTDNAARFYK 184 (598)
Q Consensus 105 ~~v~I~YgSqTGtae~~A~~la~~l~~~~~~~~~~v~dl~~~~~~~~~~~~~l~~~~~vIf~~sTyG~Geppdna~~F~~ 184 (598)
++|+|+||||||||+++|+.|++++.+++. .+.|+.+++|++ ++|.+..++||+|||+|+|++|+||+.||+
T Consensus 1 ~~i~ILYGSqTGtA~dvAe~l~Re~~r~~~--~~~V~s~Deyd~------~~ll~~~~vvFVcSTTGqGe~P~Nmk~~Wr 72 (574)
T KOG1159|consen 1 MKILILYGSQTGTAQDVAESLGREAHRRGL--QCLVMSMDEYDV------EKLLDERLVVFVCSTTGQGEEPDNMKKFWR 72 (574)
T ss_pred CceEEEeecCcccHHHHHHHHHHHHHhccC--CceEeeccccCH------hHhccCceEEEEEecCCCCCCCccHHHHHH
Confidence 479999999999999999999999998874 467899999996 578899999999999999999999999999
Q ss_pred HHHhhcCCCcccCCceEEEEeecCCcchhHhHHHHHHHHHHHhcCCeEeecceeccCCC--CchHHHHHHHHHHHHHHHh
Q 007567 185 WFTEQKEGGEWLQKLKYGVFGLGNRQYEHFNKIAKVVDEILANQGAKRLVPVGLGDDDQ--CIEDDFSAWRELVWPELDN 262 (598)
Q Consensus 185 ~L~~~~~~~~~l~~~~yaVFGLGds~Y~~Fn~~~k~ld~~L~~lGA~ri~~~g~gD~~~--~~e~~f~~W~~~l~~~L~~ 262 (598)
+|...+.+...|++++|||||||||+|+.||.++|++++||.+|||+.++++|+|||++ +++.+|..|+.++|..|..
T Consensus 73 fL~rknLps~~L~~~~~AvlGLGDSsY~KfNy~aKKL~~RL~qLGA~~~~~~glgDdQh~~G~eg~~~pW~~~lw~~L~~ 152 (574)
T KOG1159|consen 73 FLLRKNLPSTILQHMQFAVLGLGDSSYPKFNYAAKKLHRRLRQLGANSVCPRGLGDDQHEEGIEGVFDPWLKELWSYLKG 152 (574)
T ss_pred HHhhccchHHHHhhhhheeeecCcccchhhhHHHHHHHHHHHHhCcccccccccccccccccchhhhHHHHHHHHHHHHh
Confidence 99988888889999999999999999999999999999999999999999999999965 7999999999999999998
Q ss_pred hhCCCCC-CCCCCCCccccccceEEEEecCCCccccccccCCCCCCcccCCCCCeeeEEeeeecccCCCCCCceeEEEEe
Q 007567 263 LLRDDDD-PTTVSTPYTAAISEYRVVFYDNADASVGEKSWGNANGHAVYDAQHPCRSNVAVRKELHTPSSDRSCTHLEFD 341 (598)
Q Consensus 263 ~~~~~~~-~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~~~p~~a~v~~~~eL~~~~s~rs~~hie~d 341 (598)
+...... ....++ + .....|++-.+..... ++..+.....+.+-| ++++.||+++..++.++++|++|+
T Consensus 153 i~~p~~~~t~l~~~-~-~~~~k~~~l~~~~~~~------~~d~~~v~~~~~~~~--~k~~~N~rlT~~~HfQDVR~~~F~ 222 (574)
T KOG1159|consen 153 IYPPYRPETDLIPT-V-QITTKYSLLELGKASD------FSDSDIVLEPQGQIP--AKLVENRRLTSADHFQDVRLFEFD 222 (574)
T ss_pred hcCCCCCcccCCCc-c-cccchhhhhhcccccc------CCcchhhhccccccc--cchhcceeecCcchhheeeEEEEe
Confidence 7651111 101111 1 1223344443322211 110010000111223 789999999999999999999999
Q ss_pred ecCCCCccCCCCeeEEecCCCHHHHHHHHHHcCCCCCcEEEEecCCCCCCCCCCCCCCCCCC-cccHHHHHHhccccCCC
Q 007567 342 IAGTGLTYETGDHVGVYCENLSETVEEALSLLGLSPDTYFSLHTDKEDGTPLGKSTLPPTFP-PCSLRTALTKYADLLSS 420 (598)
Q Consensus 342 i~~~~l~Y~~GD~l~V~P~N~~~~Ve~~l~~Lgl~~d~~~~i~~~~~~~~~~~~~~~~~pfp-p~Tl~~~L~~y~DL~~~ 420 (598)
|.++.+.|+|||.+.|+|.|+++.|++++..+||++++...+.....+. .+..+-+| |||+++++++|+|+++.
T Consensus 223 i~~s~~~~epGDvl~l~P~N~de~V~~Fie~~gl~~~~~~~l~~~s~~~-----~~~~~~~~~p~sl~~~lk~~~D~~Sv 297 (574)
T KOG1159|consen 223 IPDSYEEFEPGDVLSLLPSNSDETVQRFIEYLGLDEDQLKPLKISSNDR-----SSPLPLLPNPLSLLNLLKYVLDFNSV 297 (574)
T ss_pred cCCccccccCCCEEEEecCCchHHHHHHHHHcCCChhhccccccccCcc-----cccccccCCchhHHHHHHHhcccccC
Confidence 9999999999999999999999999999999999999887766543321 12222478 99999999999999999
Q ss_pred ccHHHHHHHHHhCCChhHHHHHHHhcCccCHHHHHHHHHHcCCCHHHHHhhCCCCCCChhhhHhhhcCCCCCcccccCCC
Q 007567 421 PKKSALLALAAHASDPTEADRLRHLASPAGKDEYAQWIVASQRSLLEVMSEFPSAKPPLGVFFAAIVPRLQPRYYSISSS 500 (598)
Q Consensus 421 p~k~~l~~La~~a~d~~ek~~L~~Las~~gk~~y~~~i~~~~~sl~dvL~~fps~~~pl~~ll~~i~p~l~pR~YSIsSs 500 (598)
|+++||..|+.|++|+.|||||+++++++|.++|.+|+.+++||++|||++|+|.++|++.+++ ++|.|+||+|||||+
T Consensus 298 PrrsFFe~l~~~s~~~~EkEkL~efas~qg~ddl~dY~nRpRRtilEvLeDF~sv~lp~~yl~d-~~P~IrPR~fSIas~ 376 (574)
T KOG1159|consen 298 PRRSFFEMLAHFSTDEMEKEKLQEFASAQGIDDLYDYVNRPRRTILEVLEDFRSVKLPIDYLLD-LLPVIRPRAFSIASS 376 (574)
T ss_pred cchHHHHHHHHHccChHHHHHHHHhccccchHHHHHHhcchhhhHHHHHHhchhccCCHHHHHH-hccccccceeeeccC
Confidence 9999999999999999999999999999999999999999999999999999999999999997 569999999999999
Q ss_pred CCCCCCeEEEEEEEEEeeCCCCCcccCcchHHhhccCCCCCCCCCceEEEEEeCCCccCCCCCCCcEEEEeCCCChHhHH
Q 007567 501 PRVAPSRIHVTCALVYEKTPTGRVHKGLCSTWMKNSLPMEKSNDCSWAPIFVRQSNFKLPADAKVPIIMIGPGTGLAPFR 580 (598)
Q Consensus 501 p~~~~~~i~itv~~v~~~~~~g~~~~G~~S~~L~~~~~~~~~~~~~~~~i~v~~s~F~lp~~~~~PiImIg~GTGiAPfr 580 (598)
|..++ ++++|++|+|+|...+.|+|+||+||+++.+++ .+++.|++|++.+|.+.+.|+|||||||||||||
T Consensus 377 ~~~~~--leL~VAiV~ykT~l~~pRrGlCS~wl~sL~~g~------~i~~~v~~g~l~~p~~~~~PlImVGPGTGvAPfR 448 (574)
T KOG1159|consen 377 PGAHH--LELLVAIVEYKTILKEPRRGLCSNWLASLKPGD------EIPIKVRPGTLYFPSDLNKPLIMVGPGTGVAPFR 448 (574)
T ss_pred CCCCc--eeEEEEEEEEeeeccccccchhHHHHhhcCCCC------eEEEEEecCccccCCCCCCCeEEEcCCCCcccHH
Confidence 98764 999999999999999999999999999999874 5899999999999999999999999999999999
Q ss_pred HHHHHHhhcc
Q 007567 581 GSWSRTGTLS 590 (598)
Q Consensus 581 ~flqer~~~~ 590 (598)
|++|||...+
T Consensus 449 a~i~er~~q~ 458 (574)
T KOG1159|consen 449 ALIQERIYQG 458 (574)
T ss_pred HHHHHHHhhc
Confidence 9999999643
No 2
>KOG1158 consensus NADP/FAD dependent oxidoreductase [Energy production and conversion]
Probab=100.00 E-value=1e-89 Score=760.63 Aligned_cols=478 Identities=46% Similarity=0.730 Sum_probs=402.0
Q ss_pred cccccCCceEEEEEeCCCchHHHHHHHHHHHHHhhcCCceeEEEcCCCCCCcchHHHHhhccCCeEEEEEecCCCCCcch
Q 007567 98 VEVDDGKQKVTIFFGTQTGTAEGFAKALADEARARYDKAIFKVVDIDDYADEEDEYEEKLKKENIVFFFLATYGDGEPTD 177 (598)
Q Consensus 98 ~~~~~~~~~v~I~YgSqTGtae~~A~~la~~l~~~~~~~~~~v~dl~~~~~~~~~~~~~l~~~~~vIf~~sTyG~Geppd 177 (598)
..++..+.+++|+|||||||||.+|+.+++++ +++....+.+.|.+.++.+ ....+++|+.+|||+|+|||
T Consensus 40 ~~~~~~~~~~~v~~~s~tgtae~~a~~l~~~~-~~~~~~~~~~~d~~~~~l~--------~~~~l~~~~~at~g~gd~~d 110 (645)
T KOG1158|consen 40 LKVKAKRVKATVLYGSQTGTAEDFAKRLSEIF-ARFELKVLKVADYDLYALE--------DHEKLLVVVLATYGEGDPPD 110 (645)
T ss_pred HHhhccceeEEEEeccCCCCHHHHHHHHHHHh-hhccccceeecchhhcccc--------cccceeeeeeehhcCCCCCc
Confidence 34567889999999999999999999999999 8876544555566555532 45679999999999999999
Q ss_pred HHHHHHHHHHhhcCCCcccCCceEEEEeecCCcchhHhHHHHHHHHHHHhcCCeEeecceeccCCCCchHHHHHHHHHHH
Q 007567 178 NAARFYKWFTEQKEGGEWLQKLKYGVFGLGNRQYEHFNKIAKVVDEILANQGAKRLVPVGLGDDDQCIEDDFSAWRELVW 257 (598)
Q Consensus 178 na~~F~~~L~~~~~~~~~l~~~~yaVFGLGds~Y~~Fn~~~k~ld~~L~~lGA~ri~~~g~gD~~~~~e~~f~~W~~~l~ 257 (598)
|++.|++||.+... .....++|+|||+||++|+|||++|+.+|++|+++||+|++.+|+|||+.+.|++|..|++.+|
T Consensus 111 n~~~f~~~l~~~~~--~~~~~~~~~vFglg~~~y~~f~~~a~~~d~~l~~lg~~rl~~~glgdd~~~~e~~f~~w~~~~~ 188 (645)
T KOG1158|consen 111 NAEAFYQSLTELKV--LPSSLLRYAVFGLGNSTYEHFNAFAKLVDNLLEELGANRLFQLGLGDDDAGLEEDFRTWKKPLL 188 (645)
T ss_pred cHHHHHHHHhhccC--chhhhhhHHHhhccccchhhhHHHHHHHHHHHHHhhhhhhhccccccccccchhHHHHHHHHHh
Confidence 99999999997643 3455589999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhhCCCCCCCCCCCCccccccceEEEEecCCCcc-c-cccccCCCCCCcccCCCCCeeeEEeeeecccCCCCCCce
Q 007567 258 PELDNLLRDDDDPTTVSTPYTAAISEYRVVFYDNADAS-V-GEKSWGNANGHAVYDAQHPCRSNVAVRKELHTPSSDRSC 335 (598)
Q Consensus 258 ~~L~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~-~~~~~~~~~~~~~~d~~~p~~a~v~~~~eL~~~~s~rs~ 335 (598)
+++++.+..+... .++.......++.......... . ........+...+++..+||.+.++.+++|+++.++|+|
T Consensus 189 ~~~~~~f~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~r~~ 265 (645)
T KOG1158|consen 189 PELCETFSLEEDE---ATKEDETIRQYRTWTPNDPPFVPQAFPPELLNLLSSTPFDKVFPFPALVVVNLALSTPSSDRSC 265 (645)
T ss_pred Hhhhheeeecccc---ccCCcccccccccCcCccccccccccCccccccccCCcchhcccchhhhhHHhhccCCCCceEE
Confidence 9999987644221 1111111122221111100000 0 000001112236778899999999999999988899999
Q ss_pred eEEEEeecCCCCccCCCCeeEEecCCCHHHHHHHHHHcCCCCCcEEEEecCCCCCCCCCCCCCCCCCC-cccHHHHHHhc
Q 007567 336 THLEFDIAGTGLTYETGDHVGVYCENLSETVEEALSLLGLSPDTYFSLHTDKEDGTPLGKSTLPPTFP-PCSLRTALTKY 414 (598)
Q Consensus 336 ~hie~di~~~~l~Y~~GD~l~V~P~N~~~~Ve~~l~~Lgl~~d~~~~i~~~~~~~~~~~~~~~~~pfp-p~Tl~~~L~~y 414 (598)
+|+++++.+++++|+||||++|+|.|..+.|++++++|+++++..+.++....+++.......++||| |||+|++|+||
T Consensus 266 ~~~e~~~~~~~~~Y~~GD~~gv~p~N~~~~V~~ll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~t~~~~l~~~ 345 (645)
T KOG1158|consen 266 IHLELDIYGPGLRYEPGDHFGVLPPNSDELVDELLERLGLNPDTDFSLQLELETDTNPTPAKKPHPFPLPTTLRTALTHY 345 (645)
T ss_pred EEEEeecCCcccccccCCeeeecCCCCHHHHHHHHHHhcCCCccceEEEEeecCCCCCCccccCCCCCCCCcHHHHHHHh
Confidence 99999999999999999999999999999999999999999988888876544322111245688999 99999999999
Q ss_pred cccCCCccHHHHHHHHHhCCChhHHHHHHHhcCccCHHHHHHHHHHcCCCHHHHHhhCCCCCCChhhhHhhhcCCCCCcc
Q 007567 415 ADLLSSPKKSALLALAAHASDPTEADRLRHLASPAGKDEYAQWIVASQRSLLEVMSEFPSAKPPLGVFFAAIVPRLQPRY 494 (598)
Q Consensus 415 ~DL~~~p~k~~l~~La~~a~d~~ek~~L~~Las~~gk~~y~~~i~~~~~sl~dvL~~fps~~~pl~~ll~~i~p~l~pR~ 494 (598)
+||+++|+|++|++||+||+|+.||++|+.|++++|+.+|..|+....++++|||++||||+||+++|++ ++|+++|||
T Consensus 346 ldi~~~P~k~ll~~La~~a~d~~Eke~L~~L~s~~g~~~y~~~~~~~~~tl~dVl~~fps~kpP~~~ll~-~lp~L~pR~ 424 (645)
T KOG1158|consen 346 LDITGPPKKQLLRLLAEYATDPAEKERLEILSSKQGAEEYPRWVRQSCLTLLDVLEAFPSCKPPLPHLLE-LLPRLQPRY 424 (645)
T ss_pred ccccCCCcHHHHHHHHHhcCCchHHHHHHHHhCccchhhHhHHHhcccccHHHHHhhCCCCCCCHHHHHH-hCccccccc
Confidence 9999999999999999999999999999999999999999999999999999999999999999999997 569999999
Q ss_pred cccCCCCCCCCCeEEEEEEEEEeeCCCC-CcccCcchHHhhccCCCCCCCCCceEEEEEeCCCccCCCCCCCcEEEEeCC
Q 007567 495 YSISSSPRVAPSRIHVTCALVYEKTPTG-RVHKGLCSTWMKNSLPMEKSNDCSWAPIFVRQSNFKLPADAKVPIIMIGPG 573 (598)
Q Consensus 495 YSIsSsp~~~~~~i~itv~~v~~~~~~g-~~~~G~~S~~L~~~~~~~~~~~~~~~~i~v~~s~F~lp~~~~~PiImIg~G 573 (598)
|||||||..+++++|+++.+|.+.++.| +.+.||||+||+++.++++.. .+++++++.|+||.|+++||||||||
T Consensus 425 YSIssS~~~~~~~vhl~~~vv~~~~~dg~~~r~GVcS~~L~~l~~~~~~~----~~~~~~~s~frlp~dp~~PiIMIGpG 500 (645)
T KOG1158|consen 425 YSISSSPKVHPNEVHLTVTVVEYGTPDGGPKRYGVCSNWLSNLKPGEKVP----NPVPVGKSMFRLPSDPSTPIIMIGPG 500 (645)
T ss_pred cccccCcccCCCEEEEEEEEeeeccCCCCCccceehhhhHHhcCCccccC----cceeecccceecCCCCCCcEEEEcCC
Confidence 9999999999999999999999988886 778899999999999876531 14788899999999999999999999
Q ss_pred CChHhHHHHHHHHhhccCccc
Q 007567 574 TGLAPFRGSWSRTGTLSIIFR 594 (598)
Q Consensus 574 TGiAPfr~flqer~~~~~~~~ 594 (598)
|||||||||||+|.++...+-
T Consensus 501 TGiAPFRgFlq~r~~~~~~~~ 521 (645)
T KOG1158|consen 501 TGIAPFRGFLQERLFLKQQGP 521 (645)
T ss_pred CcchhhHHHHHHHHHhhhcCc
Confidence 999999999999998866543
No 3
>PRK10953 cysJ sulfite reductase subunit alpha; Provisional
Probab=100.00 E-value=3.7e-82 Score=710.60 Aligned_cols=420 Identities=26% Similarity=0.426 Sum_probs=356.6
Q ss_pred CCceEEEEEeCCCchHHHHHHHHHHHHHhhcCCceeEEEcCCCCCCcchHHHHhhccCCeEEEEEecCCCCCcchHHHHH
Q 007567 103 GKQKVTIFFGTQTGTAEGFAKALADEARARYDKAIFKVVDIDDYADEEDEYEEKLKKENIVFFFLATYGDGEPTDNAARF 182 (598)
Q Consensus 103 ~~~~v~I~YgSqTGtae~~A~~la~~l~~~~~~~~~~v~dl~~~~~~~~~~~~~l~~~~~vIf~~sTyG~Geppdna~~F 182 (598)
.+++|+|+|||||||||.+|++|++.+.+++ ..+.++++++|+. .+|.+++.+||++||||+|+|||||..|
T Consensus 60 ~~~~v~IlygSqTGnae~lA~~la~~l~~~g--~~~~v~~~~d~~~------~~L~~~~~vl~v~ST~G~Ge~Pdna~~F 131 (600)
T PRK10953 60 EMPGITLISASQTGNARRVAEQLRDDLLAAK--LNVNLVNAGDYKF------KQIAQEKLLIVVTSTQGEGEPPEEAVAL 131 (600)
T ss_pred CCCeEEEEEEcCchHHHHHHHHHHHHHHhCC--CCcEEechHhCCH------hHhccCCeEEEEECCCCCCCCChhHHHH
Confidence 4788999999999999999999999998876 4568899999975 4688899999999999999999999999
Q ss_pred HHHHHhhcCCCcccCCceEEEEeecCCcchhHhHHHHHHHHHHHhcCCeEeecceeccCCCCchHHHHHHHHHHHHHHHh
Q 007567 183 YKWFTEQKEGGEWLQKLKYGVFGLGNRQYEHFNKIAKVVDEILANQGAKRLVPVGLGDDDQCIEDDFSAWRELVWPELDN 262 (598)
Q Consensus 183 ~~~L~~~~~~~~~l~~~~yaVFGLGds~Y~~Fn~~~k~ld~~L~~lGA~ri~~~g~gD~~~~~e~~f~~W~~~l~~~L~~ 262 (598)
|+||.... ...|.+++||||||||++|++||+++|.+|++|+++||+|+++++.+|. +++++|+.|.+++|++|..
T Consensus 132 ~~~L~~~~--~~~L~~~~faVfGLGDssY~~Fc~~~k~ld~rL~~lGA~rl~~~~d~D~--~~e~~~~~W~~~~~~~l~~ 207 (600)
T PRK10953 132 HKFLFSKK--APKLENTAFAVFGLGDTSYEFFCQAGKDFDSKLAELGAERLLDRVDADV--EYQAAASEWRARVVDALKS 207 (600)
T ss_pred HHHHhhCc--CcCCCCCEEEEEccCccCHHHHHHHHHHHHHHHHHCCCeEeeccccccc--ccHHHHHHHHHHHHHHHHh
Confidence 99997543 3469999999999999999999999999999999999999999986654 5799999999999999987
Q ss_pred hhCCCCCCCCCCCCccccccceEEEEecCCCccccccccCCCCCCcccCCCCCeeeEEeeeecccCCCCCCceeEEEEee
Q 007567 263 LLRDDDDPTTVSTPYTAAISEYRVVFYDNADASVGEKSWGNANGHAVYDAQHPCRSNVAVRKELHTPSSDRSCTHLEFDI 342 (598)
Q Consensus 263 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~~~p~~a~v~~~~eL~~~~s~rs~~hie~di 342 (598)
...... ...... +. .... .....+|+..+|+.|+|+.|++|+.++++|+|+|||||+
T Consensus 208 ~~~~~~----~~~~~~-------~~--~~~~----------~~~~~~~~~~~p~~a~v~~n~~Lt~~~~~k~~rhie~dl 264 (600)
T PRK10953 208 RAPAVA----APSQSV-------AT--GAVN----------EIHTSPYSKEAPLTASLSVNQKITGRNSEKDVRHIEIDL 264 (600)
T ss_pred hcCCcc----cccccc-------cc--cccc----------ccccCCCCCCCCeEEEEEEEeecCCCCCCceEEEEEEec
Confidence 653110 000000 00 0000 001135677899999999999999999999999999999
Q ss_pred cCCCCccCCCCeeEEecCCCHHHHHHHHHHcCCCCCcEEEEecCCCCCCCCCCCCCCCCCCcccHHHHHHhccccCCCcc
Q 007567 343 AGTGLTYETGDHVGVYCENLSETVEEALSLLGLSPDTYFSLHTDKEDGTPLGKSTLPPTFPPCSLRTALTKYADLLSSPK 422 (598)
Q Consensus 343 ~~~~l~Y~~GD~l~V~P~N~~~~Ve~~l~~Lgl~~d~~~~i~~~~~~~~~~~~~~~~~pfpp~Tl~~~L~~y~DL~~~p~ 422 (598)
++++++|+|||||+|||+|+++.|++++++||+++++.+.++ + .++|++++|++|+||+.+ +
T Consensus 265 ~~~~l~Y~~GD~lgV~P~N~~~~V~~~l~~l~l~~~~~v~~~-----~------------~~~tl~~~l~~~~dl~~~-~ 326 (600)
T PRK10953 265 GDSGLRYQPGDALGVWYQNDPALVKELVELLWLKGDEPVTVD-----G------------KTLPLAEALQWHFELTVN-T 326 (600)
T ss_pred CCCCCcccCCCEEEEEcCCCHHHHHHHHHHhCCCCCCeEEeC-----C------------CCCCHHHHHHHhcccCCC-c
Confidence 999999999999999999999999999999999999887664 1 157999999999999986 6
Q ss_pred HHHHHHHHHhCCChhHHHHHHHhcCccCHHHHHHHHHHcCCCHHHHHhhCCCCCCChhhhHhhhcCCCCCcccccCCCCC
Q 007567 423 KSALLALAAHASDPTEADRLRHLASPAGKDEYAQWIVASQRSLLEVMSEFPSAKPPLGVFFAAIVPRLQPRYYSISSSPR 502 (598)
Q Consensus 423 k~~l~~La~~a~d~~ek~~L~~Las~~gk~~y~~~i~~~~~sl~dvL~~fps~~~pl~~ll~~i~p~l~pR~YSIsSsp~ 502 (598)
+.+|+.++.++.+++ |+.+. ++++.+.+|.. .++++|||++|| ++++++++++ ++|+++||+|||||||.
T Consensus 327 ~~~l~~~a~~~~~~~----l~~~~--~~~~~~~~~~~--~~~~~dvL~~f~-~~~~~~q~l~-ll~~l~pR~YSIaSsp~ 396 (600)
T PRK10953 327 ANIVENYATLTRSET----LLPLV--GDKAALQHYAA--TTPIVDMVRFAP-AQLDAEQLIG-LLRPLTPRLYSIASSQA 396 (600)
T ss_pred HHHHHHHHHhCCCHH----HHHHh--cCHHHHHHHhc--CCCHHHHHHhCC-CCCCHHHHHH-hCCCCCCeeeecccCCC
Confidence 789999999998754 44444 25677778864 699999999998 6899999996 56999999999999998
Q ss_pred CCCCeEEEEEEEEEeeCCCCCcccCcchHHhhc-cCCCCCCCCCceEEEEEeC-CCccCCCCCCCcEEEEeCCCChHhHH
Q 007567 503 VAPSRIHVTCALVYEKTPTGRVHKGLCSTWMKN-SLPMEKSNDCSWAPIFVRQ-SNFKLPADAKVPIIMIGPGTGLAPFR 580 (598)
Q Consensus 503 ~~~~~i~itv~~v~~~~~~g~~~~G~~S~~L~~-~~~~~~~~~~~~~~i~v~~-s~F~lp~~~~~PiImIg~GTGiAPfr 580 (598)
..++++||||++|.+.. .|+.+.|+||+||.+ +.++ +.++|++++ +.|++|.++++||||||+||||||||
T Consensus 397 ~~~~~v~ltv~~v~~~~-~g~~~~G~~S~~L~~~l~~G------d~v~v~~~~~~~F~lp~~~~~piImIg~GTGIAPfr 469 (600)
T PRK10953 397 EVENEVHITVGVVRYDI-EGRARAGGASSFLADRLEEE------GEVRVFIEHNDNFRLPANPETPVIMIGPGTGIAPFR 469 (600)
T ss_pred CCCCeEEEEEEEEEeec-CCCCcCceEhhhhhhcCCCC------CEEEEEeccCCcccCCCCCCCCEEEEecCcCcHHHH
Confidence 88899999999998774 688999999999986 4443 468899876 58999998899999999999999999
Q ss_pred HHHHHHhhccCc
Q 007567 581 GSWSRTGTLSII 592 (598)
Q Consensus 581 ~flqer~~~~~~ 592 (598)
||||+|.+.+..
T Consensus 470 sflq~r~~~~~~ 481 (600)
T PRK10953 470 AFMQQRAADGAP 481 (600)
T ss_pred HHHHHHHHcCCC
Confidence 999999876543
No 4
>TIGR01931 cysJ sulfite reductase [NADPH] flavoprotein, alpha-component. This model describes an NADPH-dependent sulfite reductase flavoprotein subunit. Most members of this family are found in Cys biosynthesis gene clusters. The closest homologs below the trusted cutoff are designated as subunits nitrate reductase.
Probab=100.00 E-value=1.1e-81 Score=709.36 Aligned_cols=418 Identities=32% Similarity=0.535 Sum_probs=359.4
Q ss_pred CceEEEEEeCCCchHHHHHHHHHHHHHhhcCCceeEEEcCCCCCCcchHHHHhhccCCeEEEEEecCCCCCcchHHHHHH
Q 007567 104 KQKVTIFFGTQTGTAEGFAKALADEARARYDKAIFKVVDIDDYADEEDEYEEKLKKENIVFFFLATYGDGEPTDNAARFY 183 (598)
Q Consensus 104 ~~~v~I~YgSqTGtae~~A~~la~~l~~~~~~~~~~v~dl~~~~~~~~~~~~~l~~~~~vIf~~sTyG~Geppdna~~F~ 183 (598)
.++|+|+|||||||||.+|++|++++++++ ..+.++++++|+. +++.+++.+||++||||+|+||+||..||
T Consensus 58 ~~~i~IlygSqTGnae~~A~~l~~~l~~~g--~~~~v~~~~d~~~------~~l~~~~~li~v~ST~GeGe~Pdna~~F~ 129 (597)
T TIGR01931 58 EKRVTILYGSQTGNARRLAKRLAEKLEAAG--FSVRLSSADDYKF------KQLKKERLLLLVISTQGEGEPPEEAISFH 129 (597)
T ss_pred CCeEEEEEECCchHHHHHHHHHHHHHHhCC--CccEEechHHCCH------hhcccCceEEEEeCCCCCCcCCHHHHHHH
Confidence 678999999999999999999999999876 4578999999985 46888999999999999999999999999
Q ss_pred HHHHhhcCCCcccCCceEEEEeecCCcchhHhHHHHHHHHHHHhcCCeEeecceeccCCCCchHHHHHHHHHHHHHHHhh
Q 007567 184 KWFTEQKEGGEWLQKLKYGVFGLGNRQYEHFNKIAKVVDEILANQGAKRLVPVGLGDDDQCIEDDFSAWRELVWPELDNL 263 (598)
Q Consensus 184 ~~L~~~~~~~~~l~~~~yaVFGLGds~Y~~Fn~~~k~ld~~L~~lGA~ri~~~g~gD~~~~~e~~f~~W~~~l~~~L~~~ 263 (598)
+||.+.. ...|++++||||||||++|++||+++|.+|++|+++||+|++|++.+|. +++++|++|.+++|++|...
T Consensus 130 ~~L~~~~--~~~L~~~~~aVfGLGDssY~~fc~~~k~~d~~L~~lGa~ri~~~~~~D~--~~e~~~~~W~~~~~~~l~~~ 205 (597)
T TIGR01931 130 KFLHSKK--APKLENLRYSVLGLGDSSYEFFCQTGKDFDKRLEELGGKRLLPRVDADL--DYDANAAEWRAGVLTALNEQ 205 (597)
T ss_pred HHHHhCC--CcccCCCeEEEEeCCcCCHHHHhHHHHHHHHHHHHcCCeEeeccccCcc--ChHHHHHHHHHHHHHHHHhh
Confidence 9998643 3469999999999999999999999999999999999999999987765 57999999999999999765
Q ss_pred hCCCCCCCCCCCCccccccceEEEEecCCCccccccccCCCCCCcccCCCCCeeeEEeeeecccCCCCCCceeEEEEeec
Q 007567 264 LRDDDDPTTVSTPYTAAISEYRVVFYDNADASVGEKSWGNANGHAVYDAQHPCRSNVAVRKELHTPSSDRSCTHLEFDIA 343 (598)
Q Consensus 264 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~~~p~~a~v~~~~eL~~~~s~rs~~hie~di~ 343 (598)
+.... .. +.+.+. .... ......|+..+||.|+|+.|++|+..+++++|+|||||++
T Consensus 206 ~~~~~-----~~------~~~~~~--~~~~----------~~~~~~~~~~~p~~a~v~~n~~lt~~~~~k~~~hiel~l~ 262 (597)
T TIGR01931 206 AKGSA-----ST------PSLSET--PARS----------QTATSVYSKQNPFRAEVLENQKITGRNSKKDVRHIEIDLE 262 (597)
T ss_pred ccCcc-----CC------Ccceec--cccc----------ccccCCccCCCCeEEEEEeeEecCCCCCCceEEEEEEecC
Confidence 42110 00 111110 0000 0122356778999999999999998889999999999999
Q ss_pred CCCCccCCCCeeEEecCCCHHHHHHHHHHcCCCCCcEEEEecCCCCCCCCCCCCCCCCCCcccHHHHHHhccccCCCccH
Q 007567 344 GTGLTYETGDHVGVYCENLSETVEEALSLLGLSPDTYFSLHTDKEDGTPLGKSTLPPTFPPCSLRTALTKYADLLSSPKK 423 (598)
Q Consensus 344 ~~~l~Y~~GD~l~V~P~N~~~~Ve~~l~~Lgl~~d~~~~i~~~~~~~~~~~~~~~~~pfpp~Tl~~~L~~y~DL~~~p~k 423 (598)
+++++|+|||||+|||+|+++.|++++++||+++++.++++ +. ++|++++|++|+||+.+ ++
T Consensus 263 ~~~~~Y~~GD~l~V~P~N~~~~V~~~l~~l~l~~~~~v~~~-----~~------------~~tl~~~l~~~~dl~~~-~~ 324 (597)
T TIGR01931 263 GSGLHYEPGDALGVWYKNDPALVKEILKLLNLDPDEKVTIG-----GK------------TIPLFEALITHFELTQN-TK 324 (597)
T ss_pred CCCCccCCCCEEEEEeCCCHHHHHHHHHHhCCCCCCeEEeC-----CC------------CcCHHHHHHhceeCCCC-CH
Confidence 99999999999999999999999999999999999888764 11 67999999999999985 79
Q ss_pred HHHHHHHHhCCChhHHHHHHHhcCccCHHHHHHHHHHcCCCHHHHHhhCCCCCCChhhhHhhhcCCCCCcccccCCCCCC
Q 007567 424 SALLALAAHASDPTEADRLRHLASPAGKDEYAQWIVASQRSLLEVMSEFPSAKPPLGVFFAAIVPRLQPRYYSISSSPRV 503 (598)
Q Consensus 424 ~~l~~La~~a~d~~ek~~L~~Las~~gk~~y~~~i~~~~~sl~dvL~~fps~~~pl~~ll~~i~p~l~pR~YSIsSsp~~ 503 (598)
.+|+.||++|+|++.++ +.+ +++.|.+|+. +++++|||++|| ++++.++|++ ++|+++||+|||||||..
T Consensus 325 ~~l~~la~~~~~~~l~~----~~~--~~~~~~~y~~--~~~~~dvl~~fp-~~~~~gq~v~-ll~~~~~R~YSIaSsp~~ 394 (597)
T TIGR01931 325 PLLKAYAELTGNKELKA----LIA--DNEKLKAYIQ--NTPLIDLIRDYP-ADLDAEQLIS-LLRPLTPRLYSISSSQSE 394 (597)
T ss_pred HHHHHHHHhcCCHHHHH----Hhc--CHHHHHHHHc--CCCHHHHHHHCC-CCCCHHHHHH-hCcccCCceeeeccCccc
Confidence 99999999999986544 332 5778889985 799999999999 8999999996 568899999999999988
Q ss_pred CCCeEEEEEEEEEeeCCCCCcccCcchHHhhc-cCCCCCCCCCceEEEEEeC-CCccCCCCCCCcEEEEeCCCChHhHHH
Q 007567 504 APSRIHVTCALVYEKTPTGRVHKGLCSTWMKN-SLPMEKSNDCSWAPIFVRQ-SNFKLPADAKVPIIMIGPGTGLAPFRG 581 (598)
Q Consensus 504 ~~~~i~itv~~v~~~~~~g~~~~G~~S~~L~~-~~~~~~~~~~~~~~i~v~~-s~F~lp~~~~~PiImIg~GTGiAPfr~ 581 (598)
.++++||||++|.+. ..|+.+.|+||+||.+ +.++ +.++|++++ +.|+||.++++||||||+|||||||||
T Consensus 395 ~~~~l~ltV~~v~~~-~~~~~~~G~~S~~L~~~l~~G------d~v~v~~~~~~~F~lp~~~~~piImIg~GTGIAPfrs 467 (597)
T TIGR01931 395 VGDEVHLTVGVVRYQ-AHGRARLGGASGFLAERLKEG------DTVPVYIEPNDNFRLPEDPDTPIIMIGPGTGVAPFRA 467 (597)
T ss_pred CCCEEEEEEEEEEec-CCCCccccchhHHHHhhCCCC------CEEEEEEeeCCcccCCCCCCCCEEEEcCCcCchhHHH
Confidence 789999999999776 4788999999999998 6554 468899876 579999988899999999999999999
Q ss_pred HHHHHhhccC
Q 007567 582 SWSRTGTLSI 591 (598)
Q Consensus 582 flqer~~~~~ 591 (598)
|||+|.+.+.
T Consensus 468 flq~r~~~~~ 477 (597)
T TIGR01931 468 FMQERAEDGA 477 (597)
T ss_pred HHHHHHHccC
Confidence 9999987654
No 5
>COG0369 CysJ Sulfite reductase, alpha subunit (flavoprotein) [Inorganic ion transport and metabolism]
Probab=100.00 E-value=2.1e-76 Score=655.72 Aligned_cols=422 Identities=34% Similarity=0.575 Sum_probs=369.7
Q ss_pred CCceEEEEEeCCCchHHHHHHHHHHHHHhhcCCceeEEEcCCCCCCcchHHHHhhccCCeEEEEEecCCCCCcchHHHHH
Q 007567 103 GKQKVTIFFGTQTGTAEGFAKALADEARARYDKAIFKVVDIDDYADEEDEYEEKLKKENIVFFFLATYGDGEPTDNAARF 182 (598)
Q Consensus 103 ~~~~v~I~YgSqTGtae~~A~~la~~l~~~~~~~~~~v~dl~~~~~~~~~~~~~l~~~~~vIf~~sTyG~Geppdna~~F 182 (598)
....++|+||||||||+.+|+.+++++...+ ..+.+.++++|+.. ++.....++|++||+|+|+||+||..|
T Consensus 46 ~~~~~~il~~sqtG~a~~~A~~~a~~~~~~g--~~~~~~~~~~~~~~------~~~~~~~~~~i~st~geGe~p~na~~f 117 (587)
T COG0369 46 NNKPITVLYGSQTGNAEGLAEELAKELEAAG--LQVLVASLDDYKPK------DIAEERLLLFVVSTQGEGEPPDNAVAF 117 (587)
T ss_pred CCCceEEEEccCCccHHHHHHHHHHHHHhcC--CceeecchhhcChh------hHHhhhceEEEEccccCCCCCCchHHH
Confidence 6788999999999999999999999999887 56789999999963 344446899999999999999999999
Q ss_pred HHHHHhhcCCCcccCCceEEEEeecCCcchhHhHHHHHHHHHHHhcCCeEeecceeccCCCCchHHHHHHHHHHHHHHHh
Q 007567 183 YKWFTEQKEGGEWLQKLKYGVFGLGNRQYEHFNKIAKVVDEILANQGAKRLVPVGLGDDDQCIEDDFSAWRELVWPELDN 262 (598)
Q Consensus 183 ~~~L~~~~~~~~~l~~~~yaVFGLGds~Y~~Fn~~~k~ld~~L~~lGA~ri~~~g~gD~~~~~e~~f~~W~~~l~~~L~~ 262 (598)
+++|... +...|.+++|+||||||++|++||.++|.++++|+++||+++.+++++|+. +++++...|...+++.+..
T Consensus 118 ~~~l~~~--~a~~L~~l~yav~~lGDssy~~~~~~~k~~~~~l~~~Ga~~l~~~~~~D~~-~~e~~~~~w~~~~~~~l~~ 194 (587)
T COG0369 118 HEFLKGK--KAPKLDGLRYAVLGLGDSSYEFFCQAGKDFDRRLQELGATRLFPRVEADVQ-DFEAAAAPWRDDVLELLKS 194 (587)
T ss_pred HHHhccc--ccccccccchhhhcCCccchhhhhccchhhHHHHHhcCcccccCccccccc-ccchhhhHHHHHHHHHHHh
Confidence 9999864 346799999999999999999999999999999999999999999999876 7899999999999999987
Q ss_pred hhCCCCCCCCCCCCccccccceEEEEecCCCccccccccCCCCCCcccCCCCCeeeEEeeeecccCCCCCCceeEEEEee
Q 007567 263 LLRDDDDPTTVSTPYTAAISEYRVVFYDNADASVGEKSWGNANGHAVYDAQHPCRSNVAVRKELHTPSSDRSCTHLEFDI 342 (598)
Q Consensus 263 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~~~p~~a~v~~~~eL~~~~s~rs~~hie~di 342 (598)
........ ...++. .+ .. ...+....++.+.+..|++|+..+++|+|+|++||+
T Consensus 195 ~~~~~~~~--~~~~~~--~~---------------------~~-~~~~~~~~~~~a~~~~n~~l~~~~~~k~~rhie~~l 248 (587)
T COG0369 195 KFPGQEAA--PAQVAT--SP---------------------QS-ESPYSKPAPSVAILLENRKLTGRDSDKDVRHIELDL 248 (587)
T ss_pred hccccccc--cccccc--hh---------------------cc-cccccccCcceeEeeccccCCccccCceeEEEEeec
Confidence 66422110 000000 00 00 123345677899999999999989999999999999
Q ss_pred cCCCCccCCCCeeEEecCCCHHHHHHHHHHcCCCCCcEEEEecCCCCCCCCCCCCCCCCCC-cccHHHHHHhccccCCCc
Q 007567 343 AGTGLTYETGDHVGVYCENLSETVEEALSLLGLSPDTYFSLHTDKEDGTPLGKSTLPPTFP-PCSLRTALTKYADLLSSP 421 (598)
Q Consensus 343 ~~~~l~Y~~GD~l~V~P~N~~~~Ve~~l~~Lgl~~d~~~~i~~~~~~~~~~~~~~~~~pfp-p~Tl~~~L~~y~DL~~~p 421 (598)
++++++|++||+++|||+|+++.|++++..+||++++.++++ + +.++.++|++|+|++..|
T Consensus 249 ~~s~~~y~~GD~lgV~p~N~~~lV~~~l~~~gl~~~~~v~~~------------------~~~~~~~~~l~~~~e~~~~~ 310 (587)
T COG0369 249 PDSGLRYEPGDALGVWPENDPELVDEFLELLGLDPEEPVTVD------------------GETLPLVEALKSHFEFTSAP 310 (587)
T ss_pred ccccceeCCCCeeEEcCCCCHHHHHHHHHHcCCCCCceeccC------------------CCcchHHHHHHHheecccch
Confidence 999999999999999999999999999999999998666332 2 789999999999999999
Q ss_pred cHHHHHHHHHhCCChhHHHHHHHhcCccCHHHHHHHHHHcCCCHHHHHhhCCCCCCChhhhHhhhcCCCCCcccccCCCC
Q 007567 422 KKSALLALAAHASDPTEADRLRHLASPAGKDEYAQWIVASQRSLLEVMSEFPSAKPPLGVFFAAIVPRLQPRYYSISSSP 501 (598)
Q Consensus 422 ~k~~l~~La~~a~d~~ek~~L~~Las~~gk~~y~~~i~~~~~sl~dvL~~fps~~~pl~~ll~~i~p~l~pR~YSIsSsp 501 (598)
|+++..|+.|+.+++.++.|+.+. ...|+.|.. +++++|+|++||++++|++.|++ ++|+|+||+|||||||
T Consensus 311 -~~~~~~l~~~~~~~~~~~~l~~l~----~~~~~~~~~--~~~~~d~L~~f~~~~l~~~~li~-~l~~lkPR~YSIsSs~ 382 (587)
T COG0369 311 -KSLLENLAHFAGQEELRRLLEQLD----IADLQDYAK--RRTLIDVLRDFPPAKLPAEELID-LLPPLKPRLYSIASSP 382 (587)
T ss_pred -HHHHHHHHHhcCCHHHHHHHHhhh----hHHHHhhhc--cccHHHHHhhccccCCCHHHHHH-hCccCCCeeeEeccCC
Confidence 999999999999999999999886 455666665 89999999999999999999997 5699999999999999
Q ss_pred CCCCCeEEEEEEEEEeeCCCCCcccCcchHHhhccCCCCCCCCCceEEEEEeCC-CccCCCCCCCcEEEEeCCCChHhHH
Q 007567 502 RVAPSRIHVTCALVYEKTPTGRVHKGLCSTWMKNSLPMEKSNDCSWAPIFVRQS-NFKLPADAKVPIIMIGPGTGLAPFR 580 (598)
Q Consensus 502 ~~~~~~i~itv~~v~~~~~~g~~~~G~~S~~L~~~~~~~~~~~~~~~~i~v~~s-~F~lp~~~~~PiImIg~GTGiAPfr 580 (598)
..++++|||||.+|++.+. |+.+.|+||+||+++...+ +.++|+++++ +|+||.++.+|||||||||||||||
T Consensus 383 ~~~~~~vhltV~vV~y~~~-~~~r~GvcS~~L~~~~~~g-----~~i~v~v~~n~nf~lp~~~~~PiIMIG~GTGIAPFR 456 (587)
T COG0369 383 GVSPDEVHLTVGVVRYQAE-GRERYGVCSGYLADLLEEG-----DTIPVFVQPNKNFRLPEDPETPIIMIGPGTGIAPFR 456 (587)
T ss_pred CCCCCeEEEEEEEEEeccC-CCcccccchHHHHhhhcCC-----CeEEEEeccCCccccCCCCCCceEEEcCCCCchhHH
Confidence 9999999999999998877 6699999999999998743 4799999876 8999999999999999999999999
Q ss_pred HHHHHHhhccCcc
Q 007567 581 GSWSRTGTLSIIF 593 (598)
Q Consensus 581 ~flqer~~~~~~~ 593 (598)
||||+|.+.+.-|
T Consensus 457 afvq~r~~~~~~g 469 (587)
T COG0369 457 AFVQERAANGAEG 469 (587)
T ss_pred HHHHHHHhccccC
Confidence 9999999988754
No 6
>cd06204 CYPOR NADPH cytochrome p450 reductase (CYPOR) serves as an electron donor in several oxygenase systems and is a component of nitric oxide synthases and methionine synthase reductases. CYPOR transfers two electrons from NADPH to the heme of cytochrome p450 via FAD and FMN. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap betweed the two domains. Ferredoxin-NADP+ reductase first accepts one electron from reduced ferredo
Probab=100.00 E-value=4.8e-57 Score=490.27 Aligned_cols=269 Identities=51% Similarity=0.863 Sum_probs=245.1
Q ss_pred CCCCeeeEEeeeecccCCCCCCceeEEEEeecCCCCccCCCCeeEEecCCCHHHHHHHHHHcCCC-CCcEEEEecCCCCC
Q 007567 312 AQHPCRSNVAVRKELHTPSSDRSCTHLEFDIAGTGLTYETGDHVGVYCENLSETVEEALSLLGLS-PDTYFSLHTDKEDG 390 (598)
Q Consensus 312 ~~~p~~a~v~~~~eL~~~~s~rs~~hie~di~~~~l~Y~~GD~l~V~P~N~~~~Ve~~l~~Lgl~-~d~~~~i~~~~~~~ 390 (598)
..+|+.|+|+.+++|+.+ ++|+++||+||+++++++|+|||||+|||+|+++.|++++++||++ +++.+.++....
T Consensus 2 ~~~~~~~~v~~~~~lt~~-~~~~~~~~~ld~~~~~~~Y~~GD~l~I~p~N~~~~V~~~l~~l~l~~~~~~i~~~~~~~-- 78 (416)
T cd06204 2 AKNPFLAPVAVSRELFTG-SDRSCLHIEFDISGSGIRYQTGDHLAVWPTNPSEEVERLLKVLGLDDRDTVISLKSLDE-- 78 (416)
T ss_pred CCCCeEeEEEEEeeccCC-CCccEEEEEEeCCCCCCcccCCCEEEEEcCCCHHHHHHHHHHhCcCCCCceEEeecCCc--
Confidence 357999999999999988 9999999999998889999999999999999999999999999999 899988874332
Q ss_pred CCCCCCCCCCCCC-cccHHHHHHhccccCCCccHHHHHHHHHhCCChhHHHHHHHhcCccCHHHHHHHHHHcCCCHHHHH
Q 007567 391 TPLGKSTLPPTFP-PCSLRTALTKYADLLSSPKKSALLALAAHASDPTEADRLRHLASPAGKDEYAQWIVASQRSLLEVM 469 (598)
Q Consensus 391 ~~~~~~~~~~pfp-p~Tl~~~L~~y~DL~~~p~k~~l~~La~~a~d~~ek~~L~~Las~~gk~~y~~~i~~~~~sl~dvL 469 (598)
..+.+.||| |||++++|++|+||+++|++.+|+.||.||+|++||++|.+|++ +|+++|.+|+.++++|++|+|
T Consensus 79 ----~~~~~~~~~~~~tl~~~l~~~~Dl~~~p~~~~l~~La~~~~~~~~k~~L~~l~s-~~~~~~~~~~~~~~~~~~dvL 153 (416)
T cd06204 79 ----PASKKVPFPCPTTYRTALRHYLDITAPVSRQVLAALAQFAPDPEEKERLLKLAS-EGKDEYAKWIVEPHRNLLEVL 153 (416)
T ss_pred ----ccccCCCCCCCccHHHHHHhhEEeCCCCcHHHHHHHHHHcCCHHHHHHHHHHHh-cCHHHHHHHHhhcCCCHHHHH
Confidence 123567899 99999999999999999999999999999999999999999999 999999999999999999999
Q ss_pred hhCCCCC---CChhhhHhhhcCCCCCcccccCCCCCCCCCeEEEEEEEEEeeCCCCCcccCcchHHhhccCCCCC-----
Q 007567 470 SEFPSAK---PPLGVFFAAIVPRLQPRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLCSTWMKNSLPMEK----- 541 (598)
Q Consensus 470 ~~fps~~---~pl~~ll~~i~p~l~pR~YSIsSsp~~~~~~i~itv~~v~~~~~~g~~~~G~~S~~L~~~~~~~~----- 541 (598)
++||+++ +|++.|++ ++|+++||+|||||||..++++++|||++|.++++.|+.+.|+||+||+++.++..
T Consensus 154 ~~f~s~~~~~~pl~~ll~-~lp~~~pR~YSIsSsp~~~~~~i~ltV~~v~~~~~~~~~~~G~~S~~L~~~~~~~~~~~~~ 232 (416)
T cd06204 154 QDFPSAKPTPPPFDFLIE-LLPRLQPRYYSISSSSKVHPNRIHITAVVVKYPTPTGRIIKGVATNWLLALKPALNGEKPP 232 (416)
T ss_pred HhCcccCCCCCCHHHHHH-hCccCCCcceeeccCccCCCCEEEEEEEEEEeeCCCCCEEeeeehHHHHhhhhhhcccccc
Confidence 9999999 99999997 56999999999999999889999999999999999999999999999999874210
Q ss_pred ----------CCCCceEEEEEeCCCccCCCCCCCcEEEEeCCCChHhHHHHHHHHhhc
Q 007567 542 ----------SNDCSWAPIFVRQSNFKLPADAKVPIIMIGPGTGLAPFRGSWSRTGTL 589 (598)
Q Consensus 542 ----------~~~~~~~~i~v~~s~F~lp~~~~~PiImIg~GTGiAPfr~flqer~~~ 589 (598)
...++.+++++++|.|++|.++.+|+||||+||||||||||||+|...
T Consensus 233 ~~~~~~~~~~~~~g~~v~v~~~~g~F~lp~~~~~piImIa~GtGIAP~~s~l~~~~~~ 290 (416)
T cd06204 233 TPYYLSGPRKKGGGSKVPVFVRRSNFRLPTKPSTPVIMIGPGTGVAPFRGFIQERAAL 290 (416)
T ss_pred cccccccccccCCCCeEEEEEecCCCCCCCCCCCCEEEEeCCcchHHHHHHHHHHHHH
Confidence 002357899999999999988889999999999999999999998754
No 7
>cd06207 CyPoR_like NADPH cytochrome p450 reductase (CYPOR) serves as an electron donor in several oxygenase systems and is a component of nitric oxide synthases and methionine synthase reductases. CYPOR transfers two electrons from NADPH to the heme of cytochrome p450 via FAD and FMN. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap betweed the two domains. Ferredoxin-NADP+ reductase first accepts one electron from reduced fe
Probab=100.00 E-value=1.1e-54 Score=467.45 Aligned_cols=253 Identities=42% Similarity=0.747 Sum_probs=234.1
Q ss_pred EeeeecccCCCCCCceeEEEEeecCCCCccCCCCeeEEecCCCHHHHHHHHHHcCCCCCcEEEEecCCCCCCCCCCCCCC
Q 007567 320 VAVRKELHTPSSDRSCTHLEFDIAGTGLTYETGDHVGVYCENLSETVEEALSLLGLSPDTYFSLHTDKEDGTPLGKSTLP 399 (598)
Q Consensus 320 v~~~~eL~~~~s~rs~~hie~di~~~~l~Y~~GD~l~V~P~N~~~~Ve~~l~~Lgl~~d~~~~i~~~~~~~~~~~~~~~~ 399 (598)
|+.|++|+.++++++|+||+|++++++++|+|||||+|||+|+++.|++++++||+++++.++++... ..+..
T Consensus 2 v~~~~~lt~~~~~~~~~hl~l~~~~~~~~y~~GD~l~v~p~N~~~~V~~~l~~l~l~~~~~~~~~~~~-------~~~~~ 74 (382)
T cd06207 2 VTENKRLTPADYDRSTRHIEFDLGGSGLSYETGDNLGIYPENSDALVDEFLARLGLDGDDVVRVEPNE-------QQRGK 74 (382)
T ss_pred cceeeecCCCCCCceEEEEEEecCCCCCccCCCCEEEEEcCCCHHHHHHHHHHhCCCCCCeEEEeccc-------ccccC
Confidence 56789999988999999999999888999999999999999999999999999999999999887432 12346
Q ss_pred CCCC-cccHHHHHHhccccCCCccHHHHHHHHHhCCChhHHHHHHHhcCccCHHHHHHHHHHcCCCHHHHHhhCCCCCCC
Q 007567 400 PTFP-PCSLRTALTKYADLLSSPKKSALLALAAHASDPTEADRLRHLASPAGKDEYAQWIVASQRSLLEVMSEFPSAKPP 478 (598)
Q Consensus 400 ~pfp-p~Tl~~~L~~y~DL~~~p~k~~l~~La~~a~d~~ek~~L~~Las~~gk~~y~~~i~~~~~sl~dvL~~fps~~~p 478 (598)
.||| |||++++|++|+||+++|++++|+.||.||+|+++|++|.+|++.++++.|.+| ++++++|+|++||++++|
T Consensus 75 ~~~~~~~t~~~ll~~~~dl~~~p~~~~l~~La~~~~~~~~k~~L~~l~~~~~~~~~~~~---~~~~~~d~L~~f~~~~~~ 151 (382)
T cd06207 75 PPFPEPISVRQLLKKFLDIFGKPTKKFLKLLSQLATDEEEKEDLYKLASREGRTEYKRY---EKYTYLEVLKDFPSVRPT 151 (382)
T ss_pred CCCCCCccHHHHHHhhEEeCCCCCHHHHHHHHHHCCCHHHHHHHHHHhChhhHHHHHhc---cCCCHHHHHHhCCcCCCC
Confidence 6899 999999999999999999999999999999999999999999999999999998 789999999999999999
Q ss_pred hhhhHhhhcCCCCCcccccCCCCCCCCCeEEEEEEEEEeeCCCCCcccCcchHHhhccCCCCCCCCCceEEEEEeCCCcc
Q 007567 479 LGVFFAAIVPRLQPRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLCSTWMKNSLPMEKSNDCSWAPIFVRQSNFK 558 (598)
Q Consensus 479 l~~ll~~i~p~l~pR~YSIsSsp~~~~~~i~itv~~v~~~~~~g~~~~G~~S~~L~~~~~~~~~~~~~~~~i~v~~s~F~ 558 (598)
++.|++ ++|+++||+|||||+|..+++.++|+|+++.+.++.++.+.|+||+||.++.++ +.+.|.++.|.|+
T Consensus 152 ~~~ll~-~lp~l~~R~YSIaSsp~~~~~~i~l~V~~v~~~~~~~~~~~G~~S~~L~~l~~G------d~v~v~~p~g~F~ 224 (382)
T cd06207 152 LEQLLE-LCPLIKPRYYSISSSPLKNPNEVHLLVSLVSWKTPSGRSRYGLCSSYLAGLKVG------QRVTVFIKKSSFK 224 (382)
T ss_pred HHHHHH-hCcCCCCceeeecCCCcCCCCeEEEEEEEEEeeCCCCCeecccHHHHHhhcCCC------CEEEEEEECCccc
Confidence 999997 569999999999999987789999999999988888899999999999987765 3688999999999
Q ss_pred CCCCCCCcEEEEeCCCChHhHHHHHHHHhhc
Q 007567 559 LPADAKVPIIMIGPGTGLAPFRGSWSRTGTL 589 (598)
Q Consensus 559 lp~~~~~PiImIg~GTGiAPfr~flqer~~~ 589 (598)
+|.+.++|+||||+||||||||||||+|.++
T Consensus 225 lp~~~~~plImIa~GtGIAP~rs~l~~~~~~ 255 (382)
T cd06207 225 LPKDPKKPIIMVGPGTGLAPFRAFLQERAAL 255 (382)
T ss_pred CCCCCCCCEEEEcCCccHHHHHHHHHHHHHH
Confidence 9988889999999999999999999999865
No 8
>cd06203 methionine_synthase_red Human methionine synthase reductase (MSR) restores methionine sythase which is responsible for the regeneration of methionine from homocysteine, as well as the coversion of methyltetrahydrofolate to tetrahydrofolate. In MSR, electrons are transferred from NADPH to FAD to FMN to cob(II)alamin. MSR resembles proteins of the cytochrome p450 family including nitric oxide synthase, the alpha subunit of sulfite reductase, but contains an extended hinge region. NADPH cytochrome p450 reductase (CYPOR) serves as an electron donor in several oxygenase systems and is a component of nitric oxide synthases and methionine synthase reductases. CYPOR transfers two electrons from NADPH to the heme of cytochrome p450 via FAD and FMN. CYPORs resemble ferredoxin reductase (FNR) but have a connecting subdomain inserted within the flavin binding region, which helps orient the FMN binding doamin with the FNR module. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme
Probab=100.00 E-value=2.5e-54 Score=466.66 Aligned_cols=255 Identities=36% Similarity=0.628 Sum_probs=229.4
Q ss_pred EeeeecccCCCCCCceeEEEEeecCCCCccCCCCeeEEecCCCHHHHHHHHHHcCCC--CCcEEEEecCCCCCCCCCCCC
Q 007567 320 VAVRKELHTPSSDRSCTHLEFDIAGTGLTYETGDHVGVYCENLSETVEEALSLLGLS--PDTYFSLHTDKEDGTPLGKST 397 (598)
Q Consensus 320 v~~~~eL~~~~s~rs~~hie~di~~~~l~Y~~GD~l~V~P~N~~~~Ve~~l~~Lgl~--~d~~~~i~~~~~~~~~~~~~~ 397 (598)
|..+++|+.++++++|+||+||++++++.|+|||||+|||+|+++.|++++++||++ +++.+.++.....+. .+..
T Consensus 2 v~~~~~lt~~~~~~~~~~i~~~~~~~~~~y~~GD~l~V~p~N~~~~V~~~l~~l~~~~~~~~~~~~~~~~~~~~--~~~~ 79 (398)
T cd06203 2 ISSAKKLTEGDDVKTVVDLTLDLSPTGFDYQPGDTIGILPPNTASEVESLLKRLGLLEQADQPCEVKVVPNTKK--KNAK 79 (398)
T ss_pred cccceEECCCCCCceEEEEEEecCCCCCcCCCCCEEEEeCCCCHHHHHHHHHHhCCCCCCCCEEEEEecCCccc--cccc
Confidence 678999999999999999999998889999999999999999999999999999999 888888874221111 1134
Q ss_pred CCCCCC-cccHHHHHHhccccCCCccHHHHHHHHHhCCChhHHHHHHHhcCccCHHHHHHHHHHcCCCHHHHHhhCCCCC
Q 007567 398 LPPTFP-PCSLRTALTKYADLLSSPKKSALLALAAHASDPTEADRLRHLASPAGKDEYAQWIVASQRSLLEVMSEFPSAK 476 (598)
Q Consensus 398 ~~~pfp-p~Tl~~~L~~y~DL~~~p~k~~l~~La~~a~d~~ek~~L~~Las~~gk~~y~~~i~~~~~sl~dvL~~fps~~ 476 (598)
++.+|| |+|++++|++|+||+++|++++|+.||.||+|++||++|++|++.+|+++|.+|+.+.++|++|||++|||++
T Consensus 80 ~~~~~p~~~tl~~ll~~~~Dl~~~p~~~~l~~la~~~~~~~~k~~L~~l~~~~~~~~~~~~~~~~~~~~~dvL~~f~s~~ 159 (398)
T cd06203 80 VPVHIPKVVTLRTILTWCLDIRAIPKKPLLRALAEFTSDDNEKRRLEELCSKQGSEDYTDFVRKRGLSLLDLLEAFPSCR 159 (398)
T ss_pred cCCCCCCCccHHHHHHHhEEeCCCCCHHHHHHHHHHCCCHHHHHHHHHHcChhhHHHHHHHHhhcCCCHHHHHHhCCCCC
Confidence 677899 9999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CChhhhHhhhcCCCCCcccccCCCCCCCCCeEEEEEEEEEeeCCCCCcccCcchHHhhccC-----CCCCCCCCceEEEE
Q 007567 477 PPLGVFFAAIVPRLQPRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLCSTWMKNSL-----PMEKSNDCSWAPIF 551 (598)
Q Consensus 477 ~pl~~ll~~i~p~l~pR~YSIsSsp~~~~~~i~itv~~v~~~~~~g~~~~G~~S~~L~~~~-----~~~~~~~~~~~~i~ 551 (598)
+|++.|++ ++|+++||+|||||+|..++++++|+|+++.+++ .|+||+||+++. ++ +.+.+.
T Consensus 160 ~pl~~ll~-~lp~~~~R~YSIsSsp~~~~~~i~l~v~~v~~~~------~G~~S~~L~~l~~~~~~~G------~~v~i~ 226 (398)
T cd06203 160 PPLSLLIE-HLPRLQPRPYSIASSPLEGPGKLRFIFSVVEFPA------KGLCTSWLESLCLSASSHG------VKVPFY 226 (398)
T ss_pred CCHHHHHH-hCccCCCcceeecCCcccCCCeEEEEEEEEEecC------CChhhHHHHHhhhhhcCCC------CEEEEE
Confidence 99999997 5699999999999999877899999999986543 699999999987 44 468888
Q ss_pred EeC-CCccCCCC-CCCcEEEEeCCCChHhHHHHHHHHhhc
Q 007567 552 VRQ-SNFKLPAD-AKVPIIMIGPGTGLAPFRGSWSRTGTL 589 (598)
Q Consensus 552 v~~-s~F~lp~~-~~~PiImIg~GTGiAPfr~flqer~~~ 589 (598)
+++ +.|++|.+ +++|+||||+||||||||||||+|.+.
T Consensus 227 ~~~~g~F~lp~~~~~~piImIa~GtGIAP~rs~lq~~~~~ 266 (398)
T cd06203 227 LRSSSRFRLPPDDLRRPIIMVGPGTGVAPFLGFLQHREKL 266 (398)
T ss_pred EecCCCcCCCCcCCCCCEEEEcCCcChHHHHHHHHHHHHH
Confidence 864 67999987 679999999999999999999999874
No 9
>cd06202 Nitric_oxide_synthase The ferredoxin-reductase (FNR) like C-terminal domain of the nitric oxide synthase (NOS) fuses with a heme-containing N-terminal oxidase domain. The reductase portion is similar in structure to NADPH dependent cytochrome-450 reductase (CYPOR), having an inserted connecting sub-domain within the FAD binding portion of FNR. NOS differs from CYPOR in a requirement for the cofactor tetrahydrobiopterin and unlike most CYPOR is dimeric. Nitric oxide synthase produces nitric oxide in the conversion of L-arginine to L-citruline. NOS has been implicated in a variety of processes including cytotoxicity, anti-inflamation, neurotransmission, and vascular smooth muscle relaxation.
Probab=100.00 E-value=4.8e-54 Score=465.42 Aligned_cols=261 Identities=43% Similarity=0.743 Sum_probs=228.9
Q ss_pred EeeeecccCCCCCCceeEEEEeecC-CCCccCCCCeeEEecCCCHHHHHHHHHHcCCC--CCcEEEEecCCCCCCCCC--
Q 007567 320 VAVRKELHTPSSDRSCTHLEFDIAG-TGLTYETGDHVGVYCENLSETVEEALSLLGLS--PDTYFSLHTDKEDGTPLG-- 394 (598)
Q Consensus 320 v~~~~eL~~~~s~rs~~hie~di~~-~~l~Y~~GD~l~V~P~N~~~~Ve~~l~~Lgl~--~d~~~~i~~~~~~~~~~~-- 394 (598)
|+.+++|+.++++|+|+||+||+++ +++.|+|||||+|||+|+++.|++++++||+. .++.+.++.........+
T Consensus 2 ~~~~~~l~~~~~~~~~~~i~ld~~~~~~~~Y~~GD~l~V~p~N~~~~V~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (406)
T cd06202 2 VISRQNLQSPKSSRSTILVKLDTNGAQELHYQPGDHVGIFPANRPELVDALLDRLHDAPPPDQVIKLEVLEERSTALGII 81 (406)
T ss_pred cceeeecCCCCCCceEEEEEEECCCCCCCCCCCCCEEEEEeCCCHHHHHHHHHHcCCCCCCCceEEEEecCCCCcccccc
Confidence 6778999998899999999999987 68999999999999999999999999999984 577787775433211111
Q ss_pred CCCCCCCCC-cccHHHHHHhccccCCCccHHHHHHHHHhCCChhHHHHHHHhcCccCHHHHHHHHHHcCCCHHHHHhhCC
Q 007567 395 KSTLPPTFP-PCSLRTALTKYADLLSSPKKSALLALAAHASDPTEADRLRHLASPAGKDEYAQWIVASQRSLLEVMSEFP 473 (598)
Q Consensus 395 ~~~~~~pfp-p~Tl~~~L~~y~DL~~~p~k~~l~~La~~a~d~~ek~~L~~Las~~gk~~y~~~i~~~~~sl~dvL~~fp 473 (598)
....++++| |+|++++|++|+||+++|++.+|+.||.||+|+++|++|+.|++ +++.|.+|+..+++|++|+|++||
T Consensus 82 ~~~~~~~~~~~~tl~~ll~~~lDl~~~p~~~~l~~la~~~~~~~~k~~L~~l~~--~~~~~~~~~~~~~~~~~dvL~~f~ 159 (406)
T cd06202 82 KTWTPHERLPPCTLRQALTRYLDITTPPTPQLLQLLATLATDEKDKERLEVLGK--GSSEYEDWKWYKNPNILEVLEEFP 159 (406)
T ss_pred ccccccCCCCCccHHHHHHhhEEeCCCCCHHHHHHHHHHCCCHHHHHHHHHHhc--CHHHHHHHHhccCCCHHHHHHhCC
Confidence 012345666 99999999999999999999999999999999999999999996 788999999999999999999999
Q ss_pred CCCCChhhhHhhhcCCCCCcccccCCCCCCCCCeEEEEEEEEEeeCCC--CCcccCcchHHhhccCCCCCCCCCceEEEE
Q 007567 474 SAKPPLGVFFAAIVPRLQPRYYSISSSPRVAPSRIHVTCALVYEKTPT--GRVHKGLCSTWMKNSLPMEKSNDCSWAPIF 551 (598)
Q Consensus 474 s~~~pl~~ll~~i~p~l~pR~YSIsSsp~~~~~~i~itv~~v~~~~~~--g~~~~G~~S~~L~~~~~~~~~~~~~~~~i~ 551 (598)
++++|++.|++ ++|+++||+|||||+|...++.++|+|++|.+++.. |+.+.|+||+||.++.++ +.+.|+
T Consensus 160 s~~~~~~~ll~-~lp~l~pR~YSIsSsp~~~~~~~~l~v~vv~~~~~~~~~~~~~G~~S~~L~~l~~G------d~v~v~ 232 (406)
T cd06202 160 SLQVPASLLLT-QLPLLQPRYYSISSSPDMYPGEIHLTVAVVSYRTRDGQGPVHHGVCSTWLNGLTPG------DTVPCF 232 (406)
T ss_pred cCCCCHHHHHH-hCcccCCcccccCCCccCCCCeEEEEEEEEEEECCCCCCCcccccHHHHHHhCCCC------CEEEEE
Confidence 99999999997 569999999999999998889999999999877653 557899999999988775 367888
Q ss_pred EeC-CCccCCCCCCCcEEEEeCCCChHhHHHHHHHHhhc
Q 007567 552 VRQ-SNFKLPADAKVPIIMIGPGTGLAPFRGSWSRTGTL 589 (598)
Q Consensus 552 v~~-s~F~lp~~~~~PiImIg~GTGiAPfr~flqer~~~ 589 (598)
++. +.|+||.++.+||||||+||||||||||||+|...
T Consensus 233 ~~~~~~F~lp~~~~~piImIa~GTGIAPfrsflq~r~~~ 271 (406)
T cd06202 233 VRSAPSFHLPEDPSVPVIMVGPGTGIAPFRSFWQQRQYD 271 (406)
T ss_pred EeeCCccCCCCCCCCCEEEEcCCcChHHHHHHHHHHHHH
Confidence 875 47999998889999999999999999999999753
No 10
>cd06206 bifunctional_CYPOR These bifunctional proteins fuse N-terminal cytochrome p450 with a cytochrome p450 reductase (CYPOR). NADPH cytochrome p450 reductase serves as an electron donor in several oxygenase systems and is a component of nitric oxide synthases and methionine synthase reductases. CYPOR transfers two electrons from NADPH to the heme of cytochrome p450 via FAD and FMN. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a la
Probab=100.00 E-value=2.1e-51 Score=442.29 Aligned_cols=251 Identities=34% Similarity=0.556 Sum_probs=225.7
Q ss_pred EEeeeecccCCCCCCceeEEEEeecCCCCccCCCCeeEEecCCCHHHHHHHHHHcCCCCCcEEEEecCCCCCCCCCCCCC
Q 007567 319 NVAVRKELHTPSSDRSCTHLEFDIAGTGLTYETGDHVGVYCENLSETVEEALSLLGLSPDTYFSLHTDKEDGTPLGKSTL 398 (598)
Q Consensus 319 ~v~~~~eL~~~~s~rs~~hie~di~~~~l~Y~~GD~l~V~P~N~~~~Ve~~l~~Lgl~~d~~~~i~~~~~~~~~~~~~~~ 398 (598)
+|+.|++|+.++++|+|+||+|++++ +++|+|||||+|+|+|+++.|++++++||+++++.++++... ...
T Consensus 1 ~v~~~~~lt~~~~~~~~~~~~~~~~~-~~~y~~GD~l~v~P~N~~~~V~~~l~~l~l~~~~~i~i~~~~--------~~~ 71 (384)
T cd06206 1 TVVENRELTAPGVGPSKRHLELRLPD-GMTYRAGDYLAVLPRNPPELVRRALRRFGLAWDTVLTISASG--------SAT 71 (384)
T ss_pred CeeeEEEcCCCCCCccEEEEEEECCC-CCccCCCCEEEEECCCCHHHHHHHHHHhCCCccCEEEEecCC--------CCC
Confidence 36789999999999999999999975 899999999999999999999999999999999999887522 134
Q ss_pred CCCCC-cccHHHHHHhccccCCCccHHHHHHHHHhCCChhHHHHHHHhcCccCHHHHHHHHHHcCCCHHHHHhhCCCCCC
Q 007567 399 PPTFP-PCSLRTALTKYADLLSSPKKSALLALAAHASDPTEADRLRHLASPAGKDEYAQWIVASQRSLLEVMSEFPSAKP 477 (598)
Q Consensus 399 ~~pfp-p~Tl~~~L~~y~DL~~~p~k~~l~~La~~a~d~~ek~~L~~Las~~gk~~y~~~i~~~~~sl~dvL~~fps~~~ 477 (598)
+.|+| |+|++++|++|+||+++|+|++|+.||.||+|+++|++|..++ ++.|.+++..+++|++|+|++|||+++
T Consensus 72 ~~p~~~~~tl~~~l~~~~Di~~~p~~~~l~~la~~~~~~~~k~~l~~~~----~~~~~~~~~~~~~~~~d~l~~f~s~~~ 147 (384)
T cd06206 72 GLPLGTPISVSELLSSYVELSQPATRRQLAALAEATRCPDTKALLERLA----GEAYAAEVLAKRVSVLDLLERFPSIAL 147 (384)
T ss_pred CCCCCCCEEHHHHHHhhccccCCCCHHHHHHHHHHCCCHHHHHHHHHhh----hhHHHHHHHhcCCCHHHHHHhCCCCCC
Confidence 56888 9999999999999999999999999999999999999999885 467999999999999999999999999
Q ss_pred ChhhhHhhhcCCCCCcccccCCCCCCCCCeEEEEEEEEEeeCCCC-CcccCcchHHhhccCCCCCCCCCceEEEEEe--C
Q 007567 478 PLGVFFAAIVPRLQPRYYSISSSPRVAPSRIHVTCALVYEKTPTG-RVHKGLCSTWMKNSLPMEKSNDCSWAPIFVR--Q 554 (598)
Q Consensus 478 pl~~ll~~i~p~l~pR~YSIsSsp~~~~~~i~itv~~v~~~~~~g-~~~~G~~S~~L~~~~~~~~~~~~~~~~i~v~--~ 554 (598)
|+++|++ ++|+++||+|||||+|..+++.++|+|+++.+.++.| +.+.|+||+||.++.+++ .+.+.++ .
T Consensus 148 ~~~~~l~-~~p~l~~R~YSIaSsp~~~~~~i~l~v~v~~~~~~~~~~~~~G~~S~~L~~l~~Gd------~v~v~i~~p~ 220 (384)
T cd06206 148 PLATFLA-MLPPMRPRQYSISSSPLVDPGHATLTVSVLDAPALSGQGRYRGVASSYLSSLRPGD------SIHVSVRPSH 220 (384)
T ss_pred CHHHHHH-hCcccCCcceeeccCccCCCCeEEEEEEEEEeecCCCCceeeeehHHHHhhCCCCC------eEEEEEecCC
Confidence 9999997 5699999999999999877889999999998777665 567999999999877653 5677664 3
Q ss_pred CCccCCCCCCCcEEEEeCCCChHhHHHHHHHHhhc
Q 007567 555 SNFKLPADAKVPIIMIGPGTGLAPFRGSWSRTGTL 589 (598)
Q Consensus 555 s~F~lp~~~~~PiImIg~GTGiAPfr~flqer~~~ 589 (598)
+.|++|.+..+|+||||+||||||||||||+|.++
T Consensus 221 g~F~l~~~~~~piImIa~GtGIAP~~s~l~~~~~~ 255 (384)
T cd06206 221 SAFRPPSDPSTPLIMIAAGTGLAPFRGFLQERAAL 255 (384)
T ss_pred CccCCCCCCCCCEEEEeCCCCcHHHHHHHHHHHHH
Confidence 68999988789999999999999999999999764
No 11
>PF00667 FAD_binding_1: FAD binding domain; InterPro: IPR003097 This domain is found in sulphite reductase, NADPH cytochrome P450 reductase, nitric oxide synthase and methionine synthase reductase. Flavoprotein pyridine nucleotide cytochrome reductases [] (FPNCR) catalyse the interchange of reducing equivalents between one-electron carriers and the two-electron-carrying nicotinamide dinucleotides. The enzymes include ferredoxin:NADP+reductases (FNR) [], plant and fungal NAD(P)H:nitrate reductases [, ], NADH:cytochrome b5 reductases [], NADPH:P450 reductases [], NADPH:sulphite reductases [], nitric oxide synthases [], phthalate dioxygenase reductase [], and various other flavoproteins.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3QFR_B 3FJO_A 3QFC_B 3QE2_B 3QFS_A 3QFT_A 2B5O_B 2QTZ_A 2QTL_A 2BPO_B ....
Probab=100.00 E-value=1.5e-51 Score=410.93 Aligned_cols=217 Identities=45% Similarity=0.818 Sum_probs=187.1
Q ss_pred ccCCCCCeeeEEeeeecccCCCCCCceeEEEEeecCCCCccCCCCeeEEecCCCHHHHHHHHHHcCCCCCcEEEEecCCC
Q 007567 309 VYDAQHPCRSNVAVRKELHTPSSDRSCTHLEFDIAGTGLTYETGDHVGVYCENLSETVEEALSLLGLSPDTYFSLHTDKE 388 (598)
Q Consensus 309 ~~d~~~p~~a~v~~~~eL~~~~s~rs~~hie~di~~~~l~Y~~GD~l~V~P~N~~~~Ve~~l~~Lgl~~d~~~~i~~~~~ 388 (598)
+|+.++||.|+|+.+++|+.++++|+|+||+||++++++.|+|||||||||+|+++.|++++++||+++|+.+.++....
T Consensus 2 ~~~~~~p~~a~V~~~~~Lt~~~~~r~~~hieldl~~~~l~Y~pGD~l~V~P~N~~~~V~~~l~~lgl~~d~~v~~~~~~~ 81 (219)
T PF00667_consen 2 PYSRKNPFPATVLENRRLTSPGSDRSTRHIELDLSDSGLSYQPGDHLGVYPPNDPEEVERLLKRLGLDPDEPVTLKPKEQ 81 (219)
T ss_dssp SHBTTB-EEEEEEEEEE-SSTTSSSEEEEEEEE-TTSTG---TT-EEEEE-SSEHHHHHHHHHHHTSGTTSEEEEEESST
T ss_pred CcCCCCCEEEEEEeEEEcCCCCCCceEEEEEEEeCCCCCcccCCCEEEEEccCCHHHHHHHHHHhCCCcceEEEEEeccc
Confidence 57789999999999999999999999999999999999999999999999999999999999999999999999997543
Q ss_pred CCCCCCCCCCCCCCC-cccHHHHHHhccccCCCccHHHHHHHHHhCCChhHHHHHHHhcCccCHHHHHHHHHHcCCCHHH
Q 007567 389 DGTPLGKSTLPPTFP-PCSLRTALTKYADLLSSPKKSALLALAAHASDPTEADRLRHLASPAGKDEYAQWIVASQRSLLE 467 (598)
Q Consensus 389 ~~~~~~~~~~~~pfp-p~Tl~~~L~~y~DL~~~p~k~~l~~La~~a~d~~ek~~L~~Las~~gk~~y~~~i~~~~~sl~d 467 (598)
. .....||| |||++++|++|+||+++|+|.+|+.||+||+|++||++|++|++.+|++.|.+|+...++|++|
T Consensus 82 ~------~~~~~~~~~~~tl~~~l~~~~Di~~~p~~~~l~~la~~~~~~~~k~~L~~l~~~~~~~~~~~~~~~~~~t~~d 155 (219)
T PF00667_consen 82 N------NSVKPPFPSPITLRDLLTHYLDITSPPSRSFLRALAEFATDEEEKERLLELASDEGKDDYKDYIWRERRTLLD 155 (219)
T ss_dssp T------SSCCSSSSSSEEHHHHHHHTB-TSSB--HHHHHHHHCTBSSHHHHHHHHHCTSSHHHHHHHHHTTTTTHCHHH
T ss_pred c------cccccccccceeeeeeeeeeeecccccccceeeeeeecCCCHHHHHHHHHhcchhhhhhhhhhhhcccCcHHH
Confidence 2 24677899 9999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhCCCCCCChhhhHhhhcCCCCCcccccCCCCCCCCCeEEEEEEEEEeeCCCCCcccCcchHH
Q 007567 468 VMSEFPSAKPPLGVFFAAIVPRLQPRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLCSTW 532 (598)
Q Consensus 468 vL~~fps~~~pl~~ll~~i~p~l~pR~YSIsSsp~~~~~~i~itv~~v~~~~~~g~~~~G~~S~~ 532 (598)
+|++||++++|++.||+ ++|+|+||+|||||||..+|++|||||++|++++..|+.+.|+||+|
T Consensus 156 il~~fps~~~pl~~ll~-~lp~l~PR~YSIsSS~~~~p~~v~ltv~vv~~~~~~g~~r~G~cS~y 219 (219)
T PF00667_consen 156 ILEDFPSCKPPLEELLE-LLPPLQPRYYSISSSPLVHPNKVHLTVSVVEYPTPRGRIRRGVCSSY 219 (219)
T ss_dssp HHHHSTTBTC-HHHHHH-HS-B---EEEEB-S-TTTSTTEEEEEEEE-EEECTTSSEEE-HHHHH
T ss_pred HHhhCcccCCCHHHhhh-hCCCCCCcceeecccccCCCCEEEEEEEEEEEecCCCCeeEeeCCCC
Confidence 99999999999999997 56999999999999999999999999999999999999999999998
No 12
>cd06199 SiR Cytochrome p450- like alpha subunits of E. coli sulfite reductase (SiR) multimerize with beta subunits to catalyze the NADPH dependent reduction of sulfite to sulfide. Beta subunits have an Fe4S4 cluster and a siroheme, while the alpha subunits (cysJ gene) are of the cytochrome p450 (CyPor) family having FAD and FMN as prosthetic groups and utilizing NADPH. Cypor (including cyt -450 reductase, nitric oxide synthase, and methionine synthase reductase) are ferredoxin reductase (FNR)-like proteins with an additional N-terminal FMN domain and a connecting sub-domain inserted within the flavin binding portion of the FNR-like domain. The connecting domain orients the N-terminal FMN domain with the C-terminal FNR domain.
Probab=100.00 E-value=6.7e-48 Score=411.59 Aligned_cols=235 Identities=36% Similarity=0.576 Sum_probs=206.8
Q ss_pred EEeeeecccCCCCCCceeEEEEeecCCCCccCCCCeeEEecCCCHHHHHHHHHHcCCCCCcEEEEecCCCCCCCCCCCCC
Q 007567 319 NVAVRKELHTPSSDRSCTHLEFDIAGTGLTYETGDHVGVYCENLSETVEEALSLLGLSPDTYFSLHTDKEDGTPLGKSTL 398 (598)
Q Consensus 319 ~v~~~~eL~~~~s~rs~~hie~di~~~~l~Y~~GD~l~V~P~N~~~~Ve~~l~~Lgl~~d~~~~i~~~~~~~~~~~~~~~ 398 (598)
+|+.|++|+.++++|+++||+||+++++++|+|||||+|+|+|+++.|++++++||+++++.+.
T Consensus 1 ~v~~~~~lt~~~~~~~~~~i~~~~~~~~~~y~~GD~l~i~p~N~~~~V~~~l~~l~l~~~~~~~---------------- 64 (360)
T cd06199 1 TVLENRLLTGPGSEKETRHIELDLEGSGLSYEPGDALGVYPTNDPALVDELLAALGLSGDEPVS---------------- 64 (360)
T ss_pred CcceeEeCCCCCCCccEEEEEEeCCCCCCcccCCCEEEEEcCCCHHHHHHHHHHhCcCCCCeEe----------------
Confidence 3678999999899999999999999889999999999999999999999999999999887653
Q ss_pred CCCCC-cccHHHHHHhccccCCCccHHHHHHHHHhCCChhHHHHHHHhcCccCHHHHHHHHHHcCCCHHHHHhhCC--CC
Q 007567 399 PPTFP-PCSLRTALTKYADLLSSPKKSALLALAAHASDPTEADRLRHLASPAGKDEYAQWIVASQRSLLEVMSEFP--SA 475 (598)
Q Consensus 399 ~~pfp-p~Tl~~~L~~y~DL~~~p~k~~l~~La~~a~d~~ek~~L~~Las~~gk~~y~~~i~~~~~sl~dvL~~fp--s~ 475 (598)
.++| |+|++++|++|+||+++ .++.|+.||+|+.++++|+. +|++.|.+ .++++|+|++|| ++
T Consensus 65 -~~~~~~~t~~~~l~~~~dl~~~----~~~~l~~~a~~~~~~~~l~~----~~~~~~~~-----~~~~~d~L~~f~~~~~ 130 (360)
T cd06199 65 -TVGGGTLPLREALIKHYEITTL----LLALLESYAADTGALELLAL----AALEAVLA-----FAELRDVLDLLPIPPA 130 (360)
T ss_pred -CCCCCcccHHHHHHhhhhhccC----hHHHHHHhcCCcchHHHHhh----cCHHHHHc-----cCcHHHHHHhccccCC
Confidence 1345 89999999999999997 45568889999988888775 68888865 589999999999 99
Q ss_pred CCChhhhHhhhcCCCCCcccccCCCCCCCCCeEEEEEEEEEeeCCCCCcccCcchHHhhccCCCCCCCCCceEEEEEeCC
Q 007567 476 KPPLGVFFAAIVPRLQPRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLCSTWMKNSLPMEKSNDCSWAPIFVRQS 555 (598)
Q Consensus 476 ~~pl~~ll~~i~p~l~pR~YSIsSsp~~~~~~i~itv~~v~~~~~~g~~~~G~~S~~L~~~~~~~~~~~~~~~~i~v~~s 555 (598)
++|+++|++ ++|+++||+|||||+|...+++++++|++|++.+ .++.+.|+||+||+++.+.| +.+.|+++++
T Consensus 131 ~~~~gq~l~-l~~~~~~R~YSIaSsp~~~~~~i~l~v~~v~~~~-~~~~~~G~~S~~L~~~~~~G-----d~v~v~~~~~ 203 (360)
T cd06199 131 RLTAEELLD-LLRPLQPRLYSIASSPKAVPDEVHLTVAVVRYES-HGRERKGVASTFLADRLKEG-----DTVPVFVQPN 203 (360)
T ss_pred CCCHHHHHH-hCcCCCCcceeeccCcccCCCeEEEEEEEeeecC-CCCccceehhHHHHhcCCCC-----CEEEEEEecC
Confidence 999999996 5699999999999999887899999999997766 45778999999999875333 4688888765
Q ss_pred -CccCCCCCCCcEEEEeCCCChHhHHHHHHHHhhcc
Q 007567 556 -NFKLPADAKVPIIMIGPGTGLAPFRGSWSRTGTLS 590 (598)
Q Consensus 556 -~F~lp~~~~~PiImIg~GTGiAPfr~flqer~~~~ 590 (598)
.|+||.++.+|+||||+||||||||||||+|.+.+
T Consensus 204 ~~F~lp~~~~~piImIa~GtGIAP~~s~l~~~~~~~ 239 (360)
T cd06199 204 PHFRLPEDPDAPIIMVGPGTGIAPFRAFLQEREATG 239 (360)
T ss_pred CCcCCCCCCCCCEEEEecCcChHHHHHHHHHHHhcc
Confidence 79999888899999999999999999999998654
No 13
>PRK06214 sulfite reductase; Provisional
Probab=100.00 E-value=2.1e-47 Score=421.96 Aligned_cols=249 Identities=32% Similarity=0.550 Sum_probs=215.2
Q ss_pred CCcccCCCCCeeeEEeeeecccCCCCCCceeEEEEeecCCCCccCCCCeeEEecCCCHHHHHHHHHHcCCCCCcEEEEec
Q 007567 306 GHAVYDAQHPCRSNVAVRKELHTPSSDRSCTHLEFDIAGTGLTYETGDHVGVYCENLSETVEEALSLLGLSPDTYFSLHT 385 (598)
Q Consensus 306 ~~~~~d~~~p~~a~v~~~~eL~~~~s~rs~~hie~di~~~~l~Y~~GD~l~V~P~N~~~~Ve~~l~~Lgl~~d~~~~i~~ 385 (598)
+...|+.++|+.|+|+.|++|+.++++++++||+||+++++++|+|||||+|||+|+++.|++++++||++++..+
T Consensus 159 ~~~~~~~~~p~~a~v~~n~~Lt~~~~~~~~~hle~dl~~~~l~Y~~GD~l~V~P~N~~~~V~~~l~~lgl~~~~~~---- 234 (530)
T PRK06214 159 GPLGTSRDNPVEATFLSRRRLNKPGSEKETWHVEIDLAGSGLDYEVGDSLGLFPANDPALVDAVIAALGAPPEFPI---- 234 (530)
T ss_pred cCCccCcCCCEEEEEEeEEEcCCCCCCceEEEEEEecCCCCCccCCCCEEEEeccCCHHHHHHHHHHhCCCccCcc----
Confidence 4456778999999999999999999999999999999988999999999999999999999999999999977432
Q ss_pred CCCCCCCCCCCCCCCCCCcccHHHHHHhccccCCCccHHHHHHHHHhCCChhHHHHHHHhcCccCHHHHHHHHHHcCCCH
Q 007567 386 DKEDGTPLGKSTLPPTFPPCSLRTALTKYADLLSSPKKSALLALAAHASDPTEADRLRHLASPAGKDEYAQWIVASQRSL 465 (598)
Q Consensus 386 ~~~~~~~~~~~~~~~pfpp~Tl~~~L~~y~DL~~~p~k~~l~~La~~a~d~~ek~~L~~Las~~gk~~y~~~i~~~~~sl 465 (598)
.++|++++|++|+||+++| +.+|+.|+.++++++ |++|+.|++.+..+.. ....++
T Consensus 235 -----------------~~~tlr~~L~~~~Dl~~~p-~~~~~~la~~~~~~~-~~~l~~L~~~~~~~~~-----~~~~~v 290 (530)
T PRK06214 235 -----------------GGKTLREALLEDVSLGPAP-DGLFELLSYITGGAA-RKKARALAAGEDPDGD-----AATLDV 290 (530)
T ss_pred -----------------CCccHHHHHHHheeccCCC-HHHHHHHHHhCCcHH-HHHHHHhhcccChhhh-----hhhCcH
Confidence 1679999999999999976 788999999988765 8888888764333221 134789
Q ss_pred HHHHhhCCCCCCChhhhHhhhcCCCCCcccccCCCCCCCCCeEEEEEEEEEeeCCCCCcccCcchHHhhc-cCCCCCCCC
Q 007567 466 LEVMSEFPSAKPPLGVFFAAIVPRLQPRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLCSTWMKN-SLPMEKSND 544 (598)
Q Consensus 466 ~dvL~~fps~~~pl~~ll~~i~p~l~pR~YSIsSsp~~~~~~i~itv~~v~~~~~~g~~~~G~~S~~L~~-~~~~~~~~~ 544 (598)
+|+|++||++++|++.+++ ++|+++||+|||||+|...+++++|||++|++.+ .++.+.|+||+||.+ +.++
T Consensus 291 ldvL~~fp~~~~~~~~lle-~lp~l~pR~YSISSsP~~~~~~i~ltV~~V~~~~-~~~~~~G~~S~~L~~~l~~G----- 363 (530)
T PRK06214 291 LAALEKFPGIRPDPEAFVE-ALDPLQPRLYSISSSPKATPGRVSLTVDAVRYEI-GSRLRLGVASTFLGERLAPG----- 363 (530)
T ss_pred HHHHHhCCCCCCCHHHHHh-hcCCCCcEEEEeccCCcCCCCEEEEEEEEEeecc-CCccccchhhHHHHhcCCCC-----
Confidence 9999999999999999997 5699999999999999877899999999998764 577889999999985 5554
Q ss_pred CceEEEEEeCC-CccCCCCCCCcEEEEeCCCChHhHHHHHHHHhhcc
Q 007567 545 CSWAPIFVRQS-NFKLPADAKVPIIMIGPGTGLAPFRGSWSRTGTLS 590 (598)
Q Consensus 545 ~~~~~i~v~~s-~F~lp~~~~~PiImIg~GTGiAPfr~flqer~~~~ 590 (598)
+.+.|+++++ .|++|.++++||||||+||||||||||||+|.+.+
T Consensus 364 -d~V~v~i~~~~gF~lp~~~~~PiImIg~GTGIAPfrsfLq~r~~~~ 409 (530)
T PRK06214 364 -TRVRVYVQKAHGFALPADPNTPIIMVGPGTGIAPFRAFLHERAATK 409 (530)
T ss_pred -CEEEEEecCCCCCccCCCCCCCEEEEcCCeeHHHHHHHHHHHHHhc
Confidence 3678888654 49999888899999999999999999999998654
No 14
>PRK09004 FMN-binding protein MioC; Provisional
Probab=100.00 E-value=1.2e-34 Score=271.58 Aligned_cols=144 Identities=22% Similarity=0.285 Sum_probs=127.9
Q ss_pred CceEEEEEeCCCchHHHHHHHHHHHHHhhcCCceeEEEcCCCCCCcchHHHHhhccCCeEEEEEecCCCCCcchHHHHHH
Q 007567 104 KQKVTIFFGTQTGTAEGFAKALADEARARYDKAIFKVVDIDDYADEEDEYEEKLKKENIVFFFLATYGDGEPTDNAARFY 183 (598)
Q Consensus 104 ~~~v~I~YgSqTGtae~~A~~la~~l~~~~~~~~~~v~dl~~~~~~~~~~~~~l~~~~~vIf~~sTyG~Geppdna~~F~ 183 (598)
|++|.|+|||||||||.+|++|++.+.+++. .++++++.+ .+++.+++.+||++||||+|+||+|++.|+
T Consensus 1 M~~i~I~ygS~tGnae~~A~~l~~~~~~~g~--~~~~~~~~~--------~~~l~~~~~li~~~sT~G~Ge~p~~~~~f~ 70 (146)
T PRK09004 1 MADITLISGSTLGGAEYVADHLAEKLEEAGF--STETLHGPL--------LDDLSASGLWLIVTSTHGAGDLPDNLQPFF 70 (146)
T ss_pred CCeEEEEEEcCchHHHHHHHHHHHHHHHcCC--ceEEeccCC--------HHHhccCCeEEEEECCCCCCCCChhHHHHH
Confidence 4689999999999999999999999998763 456666543 245788999999999999999999999999
Q ss_pred HHHHhhcCCCcccCCceEEEEeecCCcchhHhHHHHHHHHHHHhcCCeEeecceeccCCC--CchHHHHHHHHHHHHHH
Q 007567 184 KWFTEQKEGGEWLQKLKYGVFGLGNRQYEHFNKIAKVVDEILANQGAKRLVPVGLGDDDQ--CIEDDFSAWRELVWPEL 260 (598)
Q Consensus 184 ~~L~~~~~~~~~l~~~~yaVFGLGds~Y~~Fn~~~k~ld~~L~~lGA~ri~~~g~gD~~~--~~e~~f~~W~~~l~~~L 260 (598)
+||++. ...|++++||||||||++|++||++++.+|++|+++||+|++|++++|++. ..|++|+.|.+.+|..|
T Consensus 71 ~~L~~~---~~~l~g~~~aVfGlGds~Y~~fc~~~~~ld~~l~~lGa~~v~~~~~~D~~~~~~~e~~~~~W~~~~~~~~ 146 (146)
T PRK09004 71 EELQEQ---KPDLSQVRFAAIGIGSSEYDTFCGAIDKLEQLLKAKGAKQIGETLKIDVLQHPIPEDPAEEWLKSWINLL 146 (146)
T ss_pred HHHHhc---CCCCCCCEEEEEeecCCCHHHHhHHHHHHHHHHHHcCCeEeeccEEEeCCCCCCchhHHHHHHHHHHHhC
Confidence 999864 245999999999999999999999999999999999999999999999874 47899999999988754
No 15
>PRK05723 flavodoxin; Provisional
Probab=100.00 E-value=3.1e-34 Score=269.99 Aligned_cols=145 Identities=23% Similarity=0.234 Sum_probs=123.0
Q ss_pred ceEEEEEeCCCchHHHHHHHHHHHHHhhcCCceeEEEcCCCCCCcchHHHHhhcc--CCeEEEEEecCCCCCcchHHHHH
Q 007567 105 QKVTIFFGTQTGTAEGFAKALADEARARYDKAIFKVVDIDDYADEEDEYEEKLKK--ENIVFFFLATYGDGEPTDNAARF 182 (598)
Q Consensus 105 ~~v~I~YgSqTGtae~~A~~la~~l~~~~~~~~~~v~dl~~~~~~~~~~~~~l~~--~~~vIf~~sTyG~Geppdna~~F 182 (598)
++|.|+|||||||||.+|++|++++.+++. .+.++ .....+ ++.. .+.+||++||||+|+||+|+..|
T Consensus 1 ~~i~I~ygS~tG~ae~~A~~la~~l~~~g~--~~~~~--~~~~~~------~~~~~~~~~li~~~sT~G~Ge~Pd~~~~f 70 (151)
T PRK05723 1 MKVAILSGSVYGTAEEVARHAESLLKAAGF--EAWHN--PRASLQ------DLQAFAPEALLAVTSTTGMGELPDNLMPL 70 (151)
T ss_pred CeEEEEEEcCchHHHHHHHHHHHHHHHCCC--ceeec--CcCCHh------HHHhCCCCeEEEEECCCCCCCCchhHHHH
Confidence 579999999999999999999999987653 23332 222221 2222 37899999999999999999999
Q ss_pred HHHHHhhcCCCcccCCceEEEEeecCCcc-hhHhHHHHHHHHHHHhcCCeEeecceeccCC--CCchHHHHHHHHHHHHH
Q 007567 183 YKWFTEQKEGGEWLQKLKYGVFGLGNRQY-EHFNKIAKVVDEILANQGAKRLVPVGLGDDD--QCIEDDFSAWRELVWPE 259 (598)
Q Consensus 183 ~~~L~~~~~~~~~l~~~~yaVFGLGds~Y-~~Fn~~~k~ld~~L~~lGA~ri~~~g~gD~~--~~~e~~f~~W~~~l~~~ 259 (598)
|+||++.. ...|++++||||||||++| ++||.++++++++|+++||+|+++++++|++ .++|++|.+|++.+|++
T Consensus 71 ~~~L~~~~--~~~l~~~~~aVfGLGDs~Y~~~Fc~a~~~ld~~L~~lGA~rv~~~~~~D~~~~~~~e~~~~~W~~~~~~~ 148 (151)
T PRK05723 71 YSAIRDQL--PAAWRGLPGAVIALGDSSYGDTFCGGGEQMRELFAELGVREVQPMLRLDASETVTPETDAEPWLAEFAAA 148 (151)
T ss_pred HHHHHhcC--ccCCCCCEEEEEeEeCCcchHHHhHHHHHHHHHHHHCCCcEeeccEEeecCCCCChHHHHHHHHHHHHHH
Confidence 99998642 1269999999999999999 8999999999999999999999999999987 46899999999999988
Q ss_pred HH
Q 007567 260 LD 261 (598)
Q Consensus 260 L~ 261 (598)
|.
T Consensus 149 l~ 150 (151)
T PRK05723 149 LK 150 (151)
T ss_pred hc
Confidence 74
No 16
>PRK08105 flavodoxin; Provisional
Probab=100.00 E-value=5.6e-34 Score=267.93 Aligned_cols=145 Identities=26% Similarity=0.385 Sum_probs=127.4
Q ss_pred CceEEEEEeCCCchHHHHHHHHHHHHHhhcCCceeEEEcCCCCCCcchHHHHhhccCCeEEEEEecCCCCCcchHHHHHH
Q 007567 104 KQKVTIFFGTQTGTAEGFAKALADEARARYDKAIFKVVDIDDYADEEDEYEEKLKKENIVFFFLATYGDGEPTDNAARFY 183 (598)
Q Consensus 104 ~~~v~I~YgSqTGtae~~A~~la~~l~~~~~~~~~~v~dl~~~~~~~~~~~~~l~~~~~vIf~~sTyG~Geppdna~~F~ 183 (598)
|++|.|+|||||||||.+|++|++++.+++ ..+.++++++++. ..+.+++.+||++||||+|+||+|+..|+
T Consensus 1 m~~i~I~YgS~tGnte~~A~~l~~~l~~~g--~~~~~~~~~~~~~------~~~~~~~~vi~~~sT~G~Ge~p~~~~~f~ 72 (149)
T PRK08105 1 MAKVGIFVGTVYGNALLVAEEAEAILTAQG--HEVTLFEDPELSD------WQPYQDELVLVVTSTTGQGDLPDSIVPLF 72 (149)
T ss_pred CCeEEEEEEcCchHHHHHHHHHHHHHHhCC--CceEEechhhCCc------hhcccCCeEEEEECCCCCCCCChhHHHHH
Confidence 468999999999999999999999998775 4567888876542 12345789999999999999999999999
Q ss_pred HHHHhhcCCCcccCCceEEEEeecCCcchhHhHHHHHHHHHHHhcCCeEeecceeccCCC--CchHHHHHHHHHHHHHH
Q 007567 184 KWFTEQKEGGEWLQKLKYGVFGLGNRQYEHFNKIAKVVDEILANQGAKRLVPVGLGDDDQ--CIEDDFSAWRELVWPEL 260 (598)
Q Consensus 184 ~~L~~~~~~~~~l~~~~yaVFGLGds~Y~~Fn~~~k~ld~~L~~lGA~ri~~~g~gD~~~--~~e~~f~~W~~~l~~~L 260 (598)
++|++. ...|++++|||||||||+|++||.+++++|++|+++||++++|++++|++. +.|+.|++|.++ |..+
T Consensus 73 ~~l~~~---~~~l~~~~~avfGlGds~Y~~fc~~~~~ld~~l~~lGa~~v~~~~~~D~~~~~~~e~~~~~W~~~-~~~~ 147 (149)
T PRK08105 73 QALKDT---AGYQPNLRYGVIALGDSSYDNFCGAGKQFDALLQEQGAKRVGERLEIDACETPEPEVEANPWVEQ-WGTL 147 (149)
T ss_pred HHHHhc---CcccCCCEEEEEeeecCCHHHHHHHHHHHHHHHHHCCCeEeeccEeeeCCCCCChHHHHHHHHHH-HHHH
Confidence 999863 236999999999999999999999999999999999999999999999865 579999999999 7654
No 17
>PF00258 Flavodoxin_1: Flavodoxin; InterPro: IPR008254 This domain is found in a number of proteins including flavodoxin and nitric-oxide synthase. Flavodoxins are electron-transfer proteins that function in various electron transport systems. They bind one FMN molecule, which serves as a redox-active prosthetic group [] and are functionally interchangeable with ferredoxins. They have been isolated from prokaryotes, cyanobacteria, and some eukaryotic algae. Nitric oxide synthase (1.14.13.39 from EC) produces nitric oxide from L-arginie and NADPH. Nitric oxide acts as a messenger molecule in the body.; GO: 0010181 FMN binding, 0016491 oxidoreductase activity; PDB: 2WC1_A 2FVX_A 2FOX_A 6NUL_A 1FVX_A 2FAX_A 1FLN_A 1FLA_A 4NLL_A 2FDX_A ....
Probab=99.95 E-value=1.2e-27 Score=222.35 Aligned_cols=138 Identities=38% Similarity=0.618 Sum_probs=122.1
Q ss_pred EEEeCCCchHHHHHHHHHHHHHhhcCCceeEEEcCCCCCCcchHHHHhhccCCeEEEEEecCCCCCcchHHH-HHHHHHH
Q 007567 109 IFFGTQTGTAEGFAKALADEARARYDKAIFKVVDIDDYADEEDEYEEKLKKENIVFFFLATYGDGEPTDNAA-RFYKWFT 187 (598)
Q Consensus 109 I~YgSqTGtae~~A~~la~~l~~~~~~~~~~v~dl~~~~~~~~~~~~~l~~~~~vIf~~sTyG~Geppdna~-~F~~~L~ 187 (598)
|+|+|+|||||.+|++|++.+.+++ ..++++++++++.+ ..++..++++||++||||+|+||+++. .|++|+.
T Consensus 1 I~Y~S~tG~te~~A~~ia~~l~~~g--~~~~~~~~~~~~~~----~~~~~~~~~~i~~~sT~~~g~~p~~~~~~~~~~~~ 74 (143)
T PF00258_consen 1 IVYGSMTGNTEKMAEAIAEGLRERG--VEVRVVDLDDFDDS----PSDLSEYDLLIFGVSTYGEGEPPDNAKEFFEELLE 74 (143)
T ss_dssp EEEETSSSHHHHHHHHHHHHHHHTT--SEEEEEEGGGSCHH----HHHHCTTSEEEEEEEEETTTEESGGGHHHHHHHHH
T ss_pred CEEECCchhHHHHHHHHHHHHHHcC--Cceeeechhhhhhh----hhhhhhhceeeEeecccCCCcchhhhhhhhhhccc
Confidence 8999999999999999999999875 56789999998842 236788999999999999999999998 6677776
Q ss_pred hhc--CCCcccCCceEEEEeecCCcchhHhHHHHHHHHHHHhcCCeEeecceeccCCC--CchHHHHHH
Q 007567 188 EQK--EGGEWLQKLKYGVFGLGNRQYEHFNKIAKVVDEILANQGAKRLVPVGLGDDDQ--CIEDDFSAW 252 (598)
Q Consensus 188 ~~~--~~~~~l~~~~yaVFGLGds~Y~~Fn~~~k~ld~~L~~lGA~ri~~~g~gD~~~--~~e~~f~~W 252 (598)
... .....+++++|+|||+||+.|.+||.++|.++++|+++|++++.|++++|+.. +.+++|++|
T Consensus 75 ~~~~~~~~~~l~~~~~avfg~Gd~~~~~f~~~~k~l~~~l~~~G~~~~~~~~~~d~~~~~~~e~~~~~W 143 (143)
T PF00258_consen 75 LKGKELSKPDLKGKKYAVFGLGDSGYGGFCAAAKKLDERLEELGAKRVGPLLEIDEAPSDDLEEDFEEW 143 (143)
T ss_dssp HHHHGGGGSHCTTCEEEEEEEEETTSSTTTHHHHHHHHHHHHTTEEEESSSEEEETTTHGGHHHHHHHH
T ss_pred cccccccccccccceeeeeecCCccchhhhhHHHHHHHHHHHCCCEEEECcEEEecCCCcChHHHHhCC
Confidence 531 12356899999999999999999999999999999999999999999999977 789999999
No 18
>PRK07308 flavodoxin; Validated
Probab=99.92 E-value=1.6e-24 Score=202.81 Aligned_cols=140 Identities=24% Similarity=0.285 Sum_probs=117.8
Q ss_pred CceEEEEEeCCCchHHHHHHHHHHHHHhhcCCceeEEEcCCCCCCcchHHHHhhccCCeEEEEEecCCCCCcchHHHHHH
Q 007567 104 KQKVTIFFGTQTGTAEGFAKALADEARARYDKAIFKVVDIDDYADEEDEYEEKLKKENIVFFFLATYGDGEPTDNAARFY 183 (598)
Q Consensus 104 ~~~v~I~YgSqTGtae~~A~~la~~l~~~~~~~~~~v~dl~~~~~~~~~~~~~l~~~~~vIf~~sTyG~Geppdna~~F~ 183 (598)
|+++.|+|+|+|||||++|+.|++.+.+.+ ..+++.++++.+. .++.+++.+||++||||+|++|+++..|+
T Consensus 1 m~~~~IvY~S~tGnTe~iA~~ia~~l~~~g--~~~~~~~~~~~~~------~~l~~~d~vi~g~~t~g~G~~p~~~~~fl 72 (146)
T PRK07308 1 MALAKIVYASMTGNTEEIADIVADKLRELG--HDVDVDECTTVDA------SDFEDADIAIVATYTYGDGELPDEIVDFY 72 (146)
T ss_pred CceEEEEEECCCchHHHHHHHHHHHHHhCC--CceEEEecccCCH------hHhccCCEEEEEeCccCCCCCCHHHHHHH
Confidence 347999999999999999999999998765 3467888887764 35778899999999999999999999999
Q ss_pred HHHHhhcCCCcccCCceEEEEeecCCcchhHhHHHHHHHHHHHhcCCeEeecceeccCCCC--chHHHHHHHHHH
Q 007567 184 KWFTEQKEGGEWLQKLKYGVFGLGNRQYEHFNKIAKVVDEILANQGAKRLVPVGLGDDDQC--IEDDFSAWRELV 256 (598)
Q Consensus 184 ~~L~~~~~~~~~l~~~~yaVFGLGds~Y~~Fn~~~k~ld~~L~~lGA~ri~~~g~gD~~~~--~e~~f~~W~~~l 256 (598)
++|.+. .+++++|+|||+||+.|+|||.+++.++++|+++||+++.+..+.|...+ ..+...+|.++|
T Consensus 73 ~~l~~~-----~l~~k~~~vfG~Gd~~y~~~~~a~~~~~~~l~~~g~~~~~~~~~~~~~p~~~~~~~~~~~~~~l 142 (146)
T PRK07308 73 EDLADL-----DLSGKIYGVVGSGDTFYDYFCKSVDDFEAQFALTGATKGAESVKVDLAAEDEDIERLEAFAEEL 142 (146)
T ss_pred HHHhcC-----CCCCCEEEEEeeCCCCHHHHHHHHHHHHHHHHHcCCeEccCcEEEeCCCCHHHHHHHHHHHHHH
Confidence 999763 58899999999999999999999999999999999999998877665432 233444555554
No 19
>PRK06703 flavodoxin; Provisional
Probab=99.89 E-value=1.7e-22 Score=190.02 Aligned_cols=145 Identities=19% Similarity=0.191 Sum_probs=122.1
Q ss_pred CceEEEEEeCCCchHHHHHHHHHHHHHhhcCCceeEEEcCCCCCCcchHHHHhhccCCeEEEEEecCCCCCcchHHHHHH
Q 007567 104 KQKVTIFFGTQTGTAEGFAKALADEARARYDKAIFKVVDIDDYADEEDEYEEKLKKENIVFFFLATYGDGEPTDNAARFY 183 (598)
Q Consensus 104 ~~~v~I~YgSqTGtae~~A~~la~~l~~~~~~~~~~v~dl~~~~~~~~~~~~~l~~~~~vIf~~sTyG~Geppdna~~F~ 183 (598)
+++++|+|+|+|||||.+|+.|++++.+.+ ..++++++++.+. .++.+++.+||++||||+|++|+++..|+
T Consensus 1 mmkv~IiY~S~tGnT~~iA~~ia~~l~~~g--~~v~~~~~~~~~~------~~l~~~d~viigspt~~~g~~p~~~~~f~ 72 (151)
T PRK06703 1 MAKILIAYASMSGNTEDIADLIKVSLDAFD--HEVVLQEMDGMDA------EELLAYDGIILGSYTWGDGDLPYEAEDFH 72 (151)
T ss_pred CCeEEEEEECCCchHHHHHHHHHHHHHhcC--CceEEEehhhCCH------HHHhcCCcEEEEECCCCCCcCcHHHHHHH
Confidence 468999999999999999999999998765 4567888887663 34778999999999999999999999999
Q ss_pred HHHHhhcCCCcccCCceEEEEeecCCcchhHhHHHHHHHHHHHhcCCeEeecceeccCCC---CchHHHHHHHHHHHHHH
Q 007567 184 KWFTEQKEGGEWLQKLKYGVFGLGNRQYEHFNKIAKVVDEILANQGAKRLVPVGLGDDDQ---CIEDDFSAWRELVWPEL 260 (598)
Q Consensus 184 ~~L~~~~~~~~~l~~~~yaVFGLGds~Y~~Fn~~~k~ld~~L~~lGA~ri~~~g~gD~~~---~~e~~f~~W~~~l~~~L 260 (598)
++|... .+++++|+|||+||+.|++||.+++.++++|+++|++.+.+....+... ...+...+|.++|...+
T Consensus 73 ~~l~~~-----~l~~k~~~vfg~g~~~y~~~~~a~~~l~~~l~~~G~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~ 147 (151)
T PRK06703 73 EDLENI-----DLSGKKVAVFGSGDTAYPLFCEAVTIFEERLVERGAELVQEGLKIELAPETDEDVEKCSNFAIAFAEKF 147 (151)
T ss_pred HHHhcC-----CCCCCEEEEEccCCCChHHHHHHHHHHHHHHHHCCCEEcccCeEEecCCCchhHHHHHHHHHHHHHHHH
Confidence 999753 4789999999999999999999999999999999999988765544332 23456778888876655
Q ss_pred H
Q 007567 261 D 261 (598)
Q Consensus 261 ~ 261 (598)
.
T Consensus 148 ~ 148 (151)
T PRK06703 148 A 148 (151)
T ss_pred H
Confidence 4
No 20
>KOG1160 consensus Fe-S oxidoreductase [Energy production and conversion]
Probab=99.88 E-value=1.2e-22 Score=211.53 Aligned_cols=144 Identities=31% Similarity=0.553 Sum_probs=123.9
Q ss_pred CceEEEEEeCCCchHHHHHHHHHHHHHhhcCCceeEEEcCCCCCCcchHHHHhhccCCeEEEEEecCCCCCcchHHHHHH
Q 007567 104 KQKVTIFFGTQTGTAEGFAKALADEARARYDKAIFKVVDIDDYADEEDEYEEKLKKENIVFFFLATYGDGEPTDNAARFY 183 (598)
Q Consensus 104 ~~~v~I~YgSqTGtae~~A~~la~~l~~~~~~~~~~v~dl~~~~~~~~~~~~~l~~~~~vIf~~sTyG~Geppdna~~F~ 183 (598)
..+-.|||+||||||+++|+.+++++++.. ..++++|++ |... +++ +++++|+++|+-+|+|| +..|+
T Consensus 46 ~~~~~vfy~s~~GtA~~~A~~~~e~~~sld--~~~~llnl~-y~~~------d~p-en~~~~lv~~~~~~~~~--~d~~~ 113 (601)
T KOG1160|consen 46 LIKSKVFYSSLTGTAKKAAKSVHEKLKSLD--ELPKLLNLD-YSDF------DVP-ENALYFLVLPSYDIDPP--LDYFL 113 (601)
T ss_pred CccceEEEEeccchHHHHHHHHHHHHHhcc--cchhhcCCC-CCcc------CCC-cceEEEEEecccCCCCc--HHHHH
Confidence 334499999999999999999999998764 346788888 7653 355 77888888888899999 88999
Q ss_pred HHHHhhcC----CCcccCCceEEEEeecCCcc-hhHhHHHHHHHHHHHhcCCeEeecceeccCCCCchHHHHHHHHHHHH
Q 007567 184 KWFTEQKE----GGEWLQKLKYGVFGLGNRQY-EHFNKIAKVVDEILANQGAKRLVPVGLGDDDQCIEDDFSAWRELVWP 258 (598)
Q Consensus 184 ~~L~~~~~----~~~~l~~~~yaVFGLGds~Y-~~Fn~~~k~ld~~L~~lGA~ri~~~g~gD~~~~~e~~f~~W~~~l~~ 258 (598)
+||++... ++..|++++||||||||+.| ++||+.|+++|+|+..|||+|++|+|++|.+. ..+++|+..+..
T Consensus 114 ~~L~Esa~DFRv~~~~L~~~~yaVfGlG~~~~~~~f~~~ak~~d~wi~~LG~~r~~p~G~~~~~~---~~id~W~~~~~~ 190 (601)
T KOG1160|consen 114 QWLEESANDFRVGSFPLRGLVYAVFGLGDSEYWPKFCYQAKRADKWISRLGGRRIFPLGEVDMDS---AKIDEWTSLVAE 190 (601)
T ss_pred HHHHhhhhccccCCccccCceEEEEeccchhhhhHHHHHHHhHHHHHHhhcCceeeecCcccccc---ccHHHHHHHHHH
Confidence 99998653 45689999999999999997 99999999999999999999999999999874 445699999999
Q ss_pred HHHh
Q 007567 259 ELDN 262 (598)
Q Consensus 259 ~L~~ 262 (598)
.|+.
T Consensus 191 ~Lk~ 194 (601)
T KOG1160|consen 191 TLKD 194 (601)
T ss_pred HHcC
Confidence 8864
No 21
>PRK12359 flavodoxin FldB; Provisional
Probab=99.88 E-value=9.1e-22 Score=188.91 Aligned_cols=144 Identities=21% Similarity=0.380 Sum_probs=119.6
Q ss_pred ceEEEEEeCCCchHHHHHHHHHHHHHhhcCCceeEEEcCCCCCCcchHHHHhhccCCeEEEEEecCCCCCcchHHHHHHH
Q 007567 105 QKVTIFFGTQTGTAEGFAKALADEARARYDKAIFKVVDIDDYADEEDEYEEKLKKENIVFFFLATYGDGEPTDNAARFYK 184 (598)
Q Consensus 105 ~~v~I~YgSqTGtae~~A~~la~~l~~~~~~~~~~v~dl~~~~~~~~~~~~~l~~~~~vIf~~sTyG~Geppdna~~F~~ 184 (598)
|++.|+|+|+|||||.+|++|++++. ...+.++++++++. +++..++.+||++||||.|++|+++..|+.
T Consensus 1 Mki~I~Y~S~TGNTe~vAe~I~~~lg----~~~v~v~~i~~~~~------~~l~~yD~iIlG~pTw~~Gel~~d~~~~~~ 70 (172)
T PRK12359 1 MKIGLFYGSSTCYTEMAAEKIRDIIG----EELVDLHNLKDDPP------KLMEQYDVLILGIPTWDFGEIQEDWEAVWD 70 (172)
T ss_pred CeEEEEEECCCCHHHHHHHHHHHHhC----CCeEEEEEcccCCh------hHHccCCEEEEEecccCCCcCcHHHHHHHH
Confidence 58999999999999999999999873 13467888888774 458899999999999999999999999999
Q ss_pred HHHhhcCCCcccCCceEEEEeecCC-cc-hhHhHHHHHHHHHHHhcCCeEeec---------------------ceec-c
Q 007567 185 WFTEQKEGGEWLQKLKYGVFGLGNR-QY-EHFNKIAKVVDEILANQGAKRLVP---------------------VGLG-D 240 (598)
Q Consensus 185 ~L~~~~~~~~~l~~~~yaVFGLGds-~Y-~~Fn~~~k~ld~~L~~lGA~ri~~---------------------~g~g-D 240 (598)
.|.+. .|+|+++||||+||+ .| ++||.+++.++++|++.||+.+.. +|+. |
T Consensus 71 ~l~~~-----dl~gK~vAlFG~Gd~~~y~~~f~~a~~~l~~~l~~~Ga~ivG~~~~~gY~f~~s~a~~~~~~~f~gl~lD 145 (172)
T PRK12359 71 QLDDL-----NLEGKIVALYGMGDQLGYGEWFLDALGMLHDKLAPKGVKFVGYWPTEGYEFTSSKPLTADGQLFVGLALD 145 (172)
T ss_pred HHhhC-----CCCCCEEEEEeCCCCccchHHHHHHHHHHHHHHHhCCCeEEeeEeCCCcccccceeeEcCCCEEEEEEEc
Confidence 88753 599999999999998 58 899999999999999999995542 1111 3
Q ss_pred CC-C--CchHHHHHHHHHHHHHHHhh
Q 007567 241 DD-Q--CIEDDFSAWRELVWPELDNL 263 (598)
Q Consensus 241 ~~-~--~~e~~f~~W~~~l~~~L~~~ 263 (598)
++ + -.++++++|.++|.+++..+
T Consensus 146 ~~nq~~~t~~ri~~W~~~~~~~~~~~ 171 (172)
T PRK12359 146 EVNQYDLSDERIQQWCEQILLEMAEL 171 (172)
T ss_pred CCCchhhhHHHHHHHHHHHHHHHHhh
Confidence 33 2 26889999999998877543
No 22
>PRK09271 flavodoxin; Provisional
Probab=99.86 E-value=8.8e-21 Score=180.48 Aligned_cols=142 Identities=13% Similarity=0.149 Sum_probs=112.5
Q ss_pred ceEEEEEeCCCchHHHHHHHHHHHHHhhcCCceeEEEcCCCCCCcchHHHHhhccCCeEEEEEecCCCCCcchHHHHHHH
Q 007567 105 QKVTIFFGTQTGTAEGFAKALADEARARYDKAIFKVVDIDDYADEEDEYEEKLKKENIVFFFLATYGDGEPTDNAARFYK 184 (598)
Q Consensus 105 ~~v~I~YgSqTGtae~~A~~la~~l~~~~~~~~~~v~dl~~~~~~~~~~~~~l~~~~~vIf~~sTyG~Geppdna~~F~~ 184 (598)
++|+|+|+|+|||||++|+.|++.+.+.+ ..+.+.++++.+.++. ..++.+++++||++||||+|.+|+++..|++
T Consensus 1 mkv~IvY~S~tGnTe~~A~~ia~~l~~~g--~~v~~~~~~~~~~~~~--~~~~~~~d~vilgt~T~~~G~~p~~~~~f~~ 76 (160)
T PRK09271 1 MRILLAYASLSGNTREVAREIEERCEEAG--HEVDWVETDVQTLAEY--PLDPEDYDLYLLGTWTDNAGRTPPEMKRFIA 76 (160)
T ss_pred CeEEEEEEcCCchHHHHHHHHHHHHHhCC--CeeEEEeccccccccc--ccCcccCCEEEEECcccCCCcCCHHHHHHHH
Confidence 58999999999999999999999998876 3456677765543221 1245578999999999999999999999999
Q ss_pred HHHhhcCCCcccCCceEEEEeecCCcc--hhHhHHHHHHHHHHHhcCCeEeecceeccCCC---CchHHHHHHHHHHHHH
Q 007567 185 WFTEQKEGGEWLQKLKYGVFGLGNRQY--EHFNKIAKVVDEILANQGAKRLVPVGLGDDDQ---CIEDDFSAWRELVWPE 259 (598)
Q Consensus 185 ~L~~~~~~~~~l~~~~yaVFGLGds~Y--~~Fn~~~k~ld~~L~~lGA~ri~~~g~gD~~~---~~e~~f~~W~~~l~~~ 259 (598)
+|.+. ..++++++|||+||+.| ++||.+++.++++|+... +..+.+... ...+.+.+|.+++++.
T Consensus 77 ~l~~~-----~~~~k~~avfgsgd~~~~~~~f~~a~~~~~~~l~~~~-----~~l~~~~~p~~~~d~~~~~~~~~~~~~~ 146 (160)
T PRK09271 77 ELAET-----IGKPPNVAVFGTGETQWGEEYYCGAVHRMARFFGSSY-----PRLKIEQMPHGERDAAAIDNWTDKVLAL 146 (160)
T ss_pred HHHHH-----hccCCeEEEEecCCCCcCccHHHHHHHHHHHHHhccC-----CceeeecCCccchhHHHHHHHHHHHHHH
Confidence 99863 24678999999999999 899999999999998642 332222211 1247899999999888
Q ss_pred H
Q 007567 260 L 260 (598)
Q Consensus 260 L 260 (598)
+
T Consensus 147 ~ 147 (160)
T PRK09271 147 C 147 (160)
T ss_pred h
Confidence 7
No 23
>PRK06756 flavodoxin; Provisional
Probab=99.84 E-value=6.5e-20 Score=171.97 Aligned_cols=137 Identities=22% Similarity=0.289 Sum_probs=113.6
Q ss_pred CceEEEEEeCCCchHHHHHHHHHHHHHhhcCCceeEEEcCCCCCCcchHHHHhhccCCeEEEEEecCCCCCcchHHHHHH
Q 007567 104 KQKVTIFFGTQTGTAEGFAKALADEARARYDKAIFKVVDIDDYADEEDEYEEKLKKENIVFFFLATYGDGEPTDNAARFY 183 (598)
Q Consensus 104 ~~~v~I~YgSqTGtae~~A~~la~~l~~~~~~~~~~v~dl~~~~~~~~~~~~~l~~~~~vIf~~sTyG~Geppdna~~F~ 183 (598)
+++|+|+|+|+|||||++|+.|++++.+.+ ..+.++|+.+... ..++.+++.+||++||||+|.+|+++..|+
T Consensus 1 mmkv~IiY~S~tGnTe~vA~~ia~~l~~~g--~~v~~~~~~~~~~-----~~~~~~~d~vi~gspt~~~g~~p~~~~~fl 73 (148)
T PRK06756 1 MSKLVMIFASMSGNTEEMADHIAGVIRETE--NEIEVIDIMDSPE-----ASILEQYDGIILGAYTWGDGDLPDDFLDFY 73 (148)
T ss_pred CceEEEEEECCCchHHHHHHHHHHHHhhcC--CeEEEeehhccCC-----HHHHhcCCeEEEEeCCCCCCCCcHHHHHHH
Confidence 468999999999999999999999998765 4567778766432 135778999999999999999999999999
Q ss_pred HHHHhhcCCCcccCCceEEEEeecCCcchhHhHHHHHHHHHHHhcCCeEeecceeccCCCCchHHHHHHH
Q 007567 184 KWFTEQKEGGEWLQKLKYGVFGLGNRQYEHFNKIAKVVDEILANQGAKRLVPVGLGDDDQCIEDDFSAWR 253 (598)
Q Consensus 184 ~~L~~~~~~~~~l~~~~yaVFGLGds~Y~~Fn~~~k~ld~~L~~lGA~ri~~~g~gD~~~~~e~~f~~W~ 253 (598)
+.|... .++++++++||+|++.|.|||.+.+.+.+.|+++|++.+.+.....-. ..++++++|.
T Consensus 74 ~~l~~~-----~l~~k~~~~fgt~~~~y~~~~~a~~~l~~~l~~~g~~~v~~~~~~~~~-p~~~d~~~~~ 137 (148)
T PRK06756 74 DAMDSI-----DLTGKKAAVFGSCDSAYPKYGVAVDILIEKLQERGAAVVLEGLKVELT-PEDEDVEKCL 137 (148)
T ss_pred HHHhcC-----CCCCCEEEEEeCCCCchHHHHHHHHHHHHHHHHCCCEEcCCCeEEecC-CCHHHHHHHH
Confidence 988643 488999999999999999999999999999999999998876554322 2356665443
No 24
>TIGR01754 flav_RNR ribonucleotide reductase-associated flavodoxin, putative. This model represents a family of proteins found immediately downstream of ribonucleotide reductase genes in Xyella fastidiosa and some Gram-positive bacteria. It appears to be a highly divergent flavodoxin of the short chain type, more like the flavodoxins of the sulfate-reducing genus Desulfovibrio than like the NifF flavodoxins associated with nitrogen fixation.
Probab=99.83 E-value=3.8e-20 Score=172.20 Aligned_cols=136 Identities=15% Similarity=0.177 Sum_probs=103.2
Q ss_pred ceEEEEEeCCCchHHHHHHHHHHHHHhhcCCceeE-EEcCCCCCCcchHHHHhhccCCeEEEEEecCCCCCcchHHHHHH
Q 007567 105 QKVTIFFGTQTGTAEGFAKALADEARARYDKAIFK-VVDIDDYADEEDEYEEKLKKENIVFFFLATYGDGEPTDNAARFY 183 (598)
Q Consensus 105 ~~v~I~YgSqTGtae~~A~~la~~l~~~~~~~~~~-v~dl~~~~~~~~~~~~~l~~~~~vIf~~sTyG~Geppdna~~F~ 183 (598)
++++|+|+|+|||||++|+.|++.+...+ ..++ +.++.++... ..++.+++.+||++||||.|.+|+++..|+
T Consensus 1 M~i~IiY~S~tGnTe~iA~~ia~~l~~~g--~~v~~~~~~~~~~~~----~~~~~~~d~iilgs~t~~~g~~p~~~~~fl 74 (140)
T TIGR01754 1 MRILLAYLSLSGNTEEVAFMIQDYLQKDG--HEVDILHRIGTLADA----PLDPENYDLVFLGTWTWERGRTPDEMKDFI 74 (140)
T ss_pred CeEEEEEECCCChHHHHHHHHHHHHhhCC--eeEEecccccccccC----cCChhhCCEEEEEcCeeCCCcCCHHHHHHH
Confidence 57999999999999999999999998765 3344 4555543211 123567889999999999999999999999
Q ss_pred HHHHhhcCCCcccCCceEEEEeecCCcc--hhHhHHHHHHHHHHHhcCCeEeecceeccCCCCchHHHHHHHHHH
Q 007567 184 KWFTEQKEGGEWLQKLKYGVFGLGNRQY--EHFNKIAKVVDEILANQGAKRLVPVGLGDDDQCIEDDFSAWRELV 256 (598)
Q Consensus 184 ~~L~~~~~~~~~l~~~~yaVFGLGds~Y--~~Fn~~~k~ld~~L~~lGA~ri~~~g~gD~~~~~e~~f~~W~~~l 256 (598)
++|.. ++++|+|||+||+.| ++||.+++.++++|++++..--+....++ +...+.+.+|.+++
T Consensus 75 ~~l~~--------~~k~~avfgtgd~~~~~~~f~~a~~~~~~~l~~~~~~~~i~~~~~~--~~d~~~~~~~~~~~ 139 (140)
T TIGR01754 75 AELGY--------KPSNVAIFGTGETQWGDDLYCGAVDRLAHFFGSSHPVLKIEQMPHG--EQDGRAIYDWLEGV 139 (140)
T ss_pred HHhcc--------cCCEEEEEEcCCCCcCcchHhHHHHHHHHHHcCcCCceeEecCCcc--cccHHHHHHHHHHh
Confidence 98852 578999999999999 79999999999999876322111121122 12356778998875
No 25
>TIGR01752 flav_long flavodoxin, long chain. Flavodoxins are small redox-active proteins with a flavin mononucleotide (FMN) prosthetic group. They can act in nitrogen fixation by nitrogenase, in sulfite reduction, and light-dependent NADP+ reduction in during photosynthesis, among other roles. This model describes the long chain type, typical for nitrogen fixation but associated with pyruvate formate-lyase activation and cobalamin-dependent methionine synthase activity in E. coli.
Probab=99.83 E-value=8.4e-20 Score=174.96 Aligned_cols=140 Identities=28% Similarity=0.451 Sum_probs=114.8
Q ss_pred eEEEEEeCCCchHHHHHHHHHHHHHhhcCCceeEEEcCCCCCCcchHHHHhhccCCeEEEEEecCCCCCcchHHHHHHHH
Q 007567 106 KVTIFFGTQTGTAEGFAKALADEARARYDKAIFKVVDIDDYADEEDEYEEKLKKENIVFFFLATYGDGEPTDNAARFYKW 185 (598)
Q Consensus 106 ~v~I~YgSqTGtae~~A~~la~~l~~~~~~~~~~v~dl~~~~~~~~~~~~~l~~~~~vIf~~sTyG~Geppdna~~F~~~ 185 (598)
+|.|+|+|+|||||++|+.|++.+.. ..++++++++.+. .++.+++.+||++||||.|++|+++..|++.
T Consensus 1 ~i~IiY~S~tGnTe~vA~~Ia~~l~~----~~~~i~~~~~~~~------~~l~~~d~ii~gspty~~g~~p~~~~~fl~~ 70 (167)
T TIGR01752 1 KIGIFYGTDTGNTEGIAEKIQKELGE----DDVDVFNIAKASK------EDLNAYDKLILGTPTWGVGELQEDWEDFLPT 70 (167)
T ss_pred CEEEEEECCCChHHHHHHHHHHHhCC----CceEEEEcccCCH------hHHhhCCEEEEEecCCCCCcCcHHHHHHHHH
Confidence 47999999999999999999998863 2367888887653 3577899999999999999999999999998
Q ss_pred HHhhcCCCcccCCceEEEEeecCCc-c-hhHhHHHHHHHHHHHhcCCeEeecc----------------------eeccC
Q 007567 186 FTEQKEGGEWLQKLKYGVFGLGNRQ-Y-EHFNKIAKVVDEILANQGAKRLVPV----------------------GLGDD 241 (598)
Q Consensus 186 L~~~~~~~~~l~~~~yaVFGLGds~-Y-~~Fn~~~k~ld~~L~~lGA~ri~~~----------------------g~gD~ 241 (598)
|... .+++++++|||+||+. | ++||.+++.+++.|+++|++.+... .++.+
T Consensus 71 l~~~-----~l~gk~v~~fg~g~~~~y~~~f~~a~~~l~~~l~~~G~~~ig~~~~~gy~~~~~~~~~~~~~f~gl~~~~~ 145 (167)
T TIGR01752 71 LEEL-----DFTGKTVALFGLGDQEGYSETFCDGMGILYDKIKARGAKVVGFWPTDGYHFEASKAVRDGDKFVGLALDED 145 (167)
T ss_pred hhcC-----CCCCCEEEEEecCCCCcccHHHHHHHHHHHHHHHHcCCeEEceecCCCcccccchheeCCCEEEEEEecCC
Confidence 8642 5789999999999984 7 6999999999999999999987754 11122
Q ss_pred CC--CchHHHHHHHHHHHHHH
Q 007567 242 DQ--CIEDDFSAWRELVWPEL 260 (598)
Q Consensus 242 ~~--~~e~~f~~W~~~l~~~L 260 (598)
++ -.++.+.+|.++|.+++
T Consensus 146 ~~~~~~~~r~~~w~~~~~~~~ 166 (167)
T TIGR01752 146 NQPDLTEERIEKWVEQIKPEF 166 (167)
T ss_pred CchhhhHHHHHHHHHHHHHhh
Confidence 21 24778899988876654
No 26
>TIGR01753 flav_short flavodoxin, short chain. Flavodoxins are small redox-active proteins with a flavin mononucleotide (FMN) prosthetic group. They can act in nitrogen fixation by nitrogenase, in sulfite reduction, and light-dependent NADP+ reduction in during photosynthesis, among other roles. This model describes the short chain type. Many of these are involved in sulfite reduction.
Probab=99.83 E-value=1.1e-19 Score=167.59 Aligned_cols=135 Identities=23% Similarity=0.300 Sum_probs=111.4
Q ss_pred EEEEEeCCCchHHHHHHHHHHHHHhhcCCceeEEEcCCCCCCcchHHHHhhccCCeEEEEEecCCCCCcc-hHHHHHHHH
Q 007567 107 VTIFFGTQTGTAEGFAKALADEARARYDKAIFKVVDIDDYADEEDEYEEKLKKENIVFFFLATYGDGEPT-DNAARFYKW 185 (598)
Q Consensus 107 v~I~YgSqTGtae~~A~~la~~l~~~~~~~~~~v~dl~~~~~~~~~~~~~l~~~~~vIf~~sTyG~Gepp-dna~~F~~~ 185 (598)
|+|+|+|+|||||.+|+.|++.+.+.+ ..++++++.+++. .++.+++.+||++|||+.|.+| ++++.|+++
T Consensus 1 v~Iiy~S~tGnT~~~A~~i~~~~~~~g--~~v~~~~~~~~~~------~~l~~~d~iilgspty~~g~~p~~~~~~f~~~ 72 (140)
T TIGR01753 1 ILIVYASMTGNTEEMANIIAEGLKEAG--AEVDLLEVADADA------EDLLSYDAVLLGCSTWGDEDLEQDDFEPFFEE 72 (140)
T ss_pred CEEEEECCCcHHHHHHHHHHHHHHhcC--CeEEEEEcccCCH------HHHhcCCEEEEEcCCCCCCCCCcchHHHHHHH
Confidence 589999999999999999999998765 4578888888764 3577899999999999999999 999999999
Q ss_pred HHhhcCCCcccCCceEEEEeecCCcchhHhHHHHHHHHHHHhcCCeEeecceeccCCC--CchHHHHHHHHH
Q 007567 186 FTEQKEGGEWLQKLKYGVFGLGNRQYEHFNKIAKVVDEILANQGAKRLVPVGLGDDDQ--CIEDDFSAWREL 255 (598)
Q Consensus 186 L~~~~~~~~~l~~~~yaVFGLGds~Y~~Fn~~~k~ld~~L~~lGA~ri~~~g~gD~~~--~~e~~f~~W~~~ 255 (598)
|... .++|++|+|||+|++.|+ ||.+++.++++|+++|++++.+....+... ...+...+|.+.
T Consensus 73 l~~~-----~~~gk~~~vfgt~g~~~~-f~~~~~~~~~~l~~~g~~~v~~~~~~~~~p~~~~~~~~~~~~~~ 138 (140)
T TIGR01753 73 LEDI-----DLGGKKVALFGSGDWGYE-FCEAVDDWEERLKEAGATIIAEGLKVDGDPEEEDLDKCREFAKD 138 (140)
T ss_pred hhhC-----CCCCCEEEEEecCCCCch-hhHHHHHHHHHHHHCCCEEecCCeeeecCCCHHHHHHHHHHHHH
Confidence 8753 478999999999999999 999999999999999999998755443221 123334455444
No 27
>PLN03115 ferredoxin--NADP(+) reductase; Provisional
Probab=99.79 E-value=1.5e-18 Score=185.21 Aligned_cols=152 Identities=22% Similarity=0.376 Sum_probs=123.0
Q ss_pred ccCCCCCeeeEEeeeecccCCCCCCceeEEEEeecCCCCccCCCCeeEEecCCCHHHHHHHHHHcCCCCCcEEEEecCCC
Q 007567 309 VYDAQHPCRSNVAVRKELHTPSSDRSCTHLEFDIAGTGLTYETGDHVGVYCENLSETVEEALSLLGLSPDTYFSLHTDKE 388 (598)
Q Consensus 309 ~~d~~~p~~a~v~~~~eL~~~~s~rs~~hie~di~~~~l~Y~~GD~l~V~P~N~~~~Ve~~l~~Lgl~~d~~~~i~~~~~ 388 (598)
.|..++|+.++|+.|.+++..+....++||+|+..+ .+.|++|.+++|.|+.. +
T Consensus 84 ~~~~~~p~~~~v~~n~~i~~~~~~~~v~~l~l~~~~-~~~f~~GQfv~I~~~g~-------------~------------ 137 (367)
T PLN03115 84 KFRPKEPYTGRCLLNTKITGDDAPGETWHMVFSTEG-EIPYREGQSIGVIPDGI-------------D------------ 137 (367)
T ss_pred eeccCCCeEEEEEeecccccCCCCCceEEEEEcCCC-CCCcCCCCEEEEEcCCc-------------C------------
Confidence 367889999999999999987778899999999764 79999999999976521 0
Q ss_pred CCCCCCCCCCCCCCCcccHHHHHHhccccCCCccHHHHHHHHHhCCChhHHHHHHHhcCccCHHHHHHHHHHcCCCHHHH
Q 007567 389 DGTPLGKSTLPPTFPPCSLRTALTKYADLLSSPKKSALLALAAHASDPTEADRLRHLASPAGKDEYAQWIVASQRSLLEV 468 (598)
Q Consensus 389 ~~~~~~~~~~~~pfpp~Tl~~~L~~y~DL~~~p~k~~l~~La~~a~d~~ek~~L~~Las~~gk~~y~~~i~~~~~sl~dv 468 (598)
. +|
T Consensus 138 ----------------------------~-------------------------------~g------------------ 140 (367)
T PLN03115 138 ----------------------------K-------------------------------NG------------------ 140 (367)
T ss_pred ----------------------------C-------------------------------CC------------------
Confidence 0 00
Q ss_pred HhhCCCCCCChhhhHhhhcCCCCCcccccCCCCCC---CCCeEEEEEEEEEeeCCCCCcccCcchHHhhccCCCCCCCCC
Q 007567 469 MSEFPSAKPPLGVFFAAIVPRLQPRYYSISSSPRV---APSRIHVTCALVYEKTPTGRVHKGLCSTWMKNSLPMEKSNDC 545 (598)
Q Consensus 469 L~~fps~~~pl~~ll~~i~p~l~pR~YSIsSsp~~---~~~~i~itv~~v~~~~~~g~~~~G~~S~~L~~~~~~~~~~~~ 545 (598)
.+..+|.|||||+|.. .+++++|+|+++.|++..|+...|+||+||+++.+++
T Consensus 141 -------------------~p~~~R~YSIAS~p~~~~~~~~~l~L~Vk~~~y~~~~g~~~~G~~S~~L~~Lk~Gd----- 196 (367)
T PLN03115 141 -------------------KPHKLRLYSIASSALGDFGDSKTVSLCVKRLVYTNDQGEIVKGVCSNFLCDLKPGA----- 196 (367)
T ss_pred -------------------CcCceeeeecCCCCcccCCCCCEEEEEEEEEEeecCCCccCCeehHhhHhhCCCcC-----
Confidence 1134699999999853 3578999999887777778888999999999987764
Q ss_pred ceEEEEEeCCCcc-CCCCCCCcEEEEeCCCChHhHHHHHHHHhh
Q 007567 546 SWAPIFVRQSNFK-LPADAKVPIIMIGPGTGLAPFRGSWSRTGT 588 (598)
Q Consensus 546 ~~~~i~v~~s~F~-lp~~~~~PiImIg~GTGiAPfr~flqer~~ 588 (598)
.+.|..+.|.|. +|.++++|+||||+|||||||||||+++..
T Consensus 197 -~V~v~GP~G~~fllp~~~~~~iImIAgGTGIAP~rs~L~~~~~ 239 (367)
T PLN03115 197 -EVKITGPVGKEMLMPKDPNATIIMLATGTGIAPFRSFLWKMFF 239 (367)
T ss_pred -EEEEEeecCCceeCCcCCCCCEEEEeCCeeHHHHHHHHHHHHh
Confidence 567777778754 576777899999999999999999998753
No 28
>COG0716 FldA Flavodoxins [Energy production and conversion]
Probab=99.77 E-value=5.3e-18 Score=159.84 Aligned_cols=143 Identities=24% Similarity=0.320 Sum_probs=114.1
Q ss_pred CceEEEEEeCCCchHHHHHHHHHHHHHhhcCCceeEEEcCCCCCCcchHHHHhhccCCeEEEEEecCCCCCcchHHHHHH
Q 007567 104 KQKVTIFFGTQTGTAEGFAKALADEARARYDKAIFKVVDIDDYADEEDEYEEKLKKENIVFFFLATYGDGEPTDNAARFY 183 (598)
Q Consensus 104 ~~~v~I~YgSqTGtae~~A~~la~~l~~~~~~~~~~v~dl~~~~~~~~~~~~~l~~~~~vIf~~sTyG~Geppdna~~F~ 183 (598)
|++++|+|+|+|||||.+|+.|++++.+.+. .+ .++......+ ..+..++.++++++|||.|+.|+++..|+
T Consensus 1 M~ki~Ivy~S~tGnTe~vA~~i~~~l~~~~~--~~-~~~~~~~~~~-----~~~~~~d~~~~g~~t~~~ge~~~~~~~f~ 72 (151)
T COG0716 1 MMKILIVYGSRTGNTEKVAEIIAEELGADGF--EV-DIDIRPGIKD-----DLLESYDELLLGTPTWGAGELPDDWYDFI 72 (151)
T ss_pred CCeEEEEEEcCCCcHHHHHHHHHHHhccCCc--eE-EEeecCCcch-----hhhccCCEEEEEeCCCCCCcCCccHHHHH
Confidence 5789999999999999999999999987653 22 2222222211 12347889999999999999999999999
Q ss_pred HHHHhhcCCCcccCCceEEEEeecCCcchh-HhHHHHHHHHHHHhcC--CeEeecceec--cC--CCCchHHHHHHHHHH
Q 007567 184 KWFTEQKEGGEWLQKLKYGVFGLGNRQYEH-FNKIAKVVDEILANQG--AKRLVPVGLG--DD--DQCIEDDFSAWRELV 256 (598)
Q Consensus 184 ~~L~~~~~~~~~l~~~~yaVFGLGds~Y~~-Fn~~~k~ld~~L~~lG--A~ri~~~g~g--D~--~~~~e~~f~~W~~~l 256 (598)
..+.. ..+++++||+||+||+.|.. ||.++..+.+.|+..| +....+.... |. ....++....|.+++
T Consensus 73 ~~~~~-----~~~~~k~~a~~g~gd~~~~~~fc~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~e~~~~~~~~w~~~~ 147 (151)
T COG0716 73 EELEP-----IDFKGKLVAVFGLGDQSYYGYFCEAGGNFEDILEEKGAKAVGILETLGYIFDASPNEEDEKRIKEWVKQI 147 (151)
T ss_pred HHhcc-----cCcCCceEEEEeccccccchHHHHHHHHHHHHHHHcCccccccccccceeccCCCCCccHHHHHHHHHHH
Confidence 98875 36899999999999999987 9999999999999999 5555555444 32 335788999999988
Q ss_pred HHH
Q 007567 257 WPE 259 (598)
Q Consensus 257 ~~~ 259 (598)
+..
T Consensus 148 ~~~ 150 (151)
T COG0716 148 LNE 150 (151)
T ss_pred Hhh
Confidence 753
No 29
>PRK09267 flavodoxin FldA; Validated
Probab=99.77 E-value=1.1e-17 Score=160.21 Aligned_cols=142 Identities=27% Similarity=0.466 Sum_probs=114.9
Q ss_pred CceEEEEEeCCCchHHHHHHHHHHHHHhhcCCceeEEEcCCCCCCcchHHHHhhccCCeEEEEEecCCCCCcchHHHHHH
Q 007567 104 KQKVTIFFGTQTGTAEGFAKALADEARARYDKAIFKVVDIDDYADEEDEYEEKLKKENIVFFFLATYGDGEPTDNAARFY 183 (598)
Q Consensus 104 ~~~v~I~YgSqTGtae~~A~~la~~l~~~~~~~~~~v~dl~~~~~~~~~~~~~l~~~~~vIf~~sTyG~Geppdna~~F~ 183 (598)
|++++|+|+|+||||+++|+.|++.+.. ..+.++|+++.+. .++..++.+||++|||+.|.+|+.+..|+
T Consensus 1 mmki~IiY~S~tGnT~~vA~~Ia~~l~~----~~~~~~~~~~~~~------~~l~~~d~vi~g~pt~~~G~~~~~~~~fl 70 (169)
T PRK09267 1 MAKIGIFFGSDTGNTEDIAKMIQKKLGK----DVADVVDIAKASK------EDFEAYDLLILGIPTWGYGELQCDWDDFL 70 (169)
T ss_pred CCeEEEEEECCCChHHHHHHHHHHHhCC----CceEEEEhhhCCH------hhHhhCCEEEEEecCcCCCCCCHHHHHHH
Confidence 4689999999999999999999999853 2357888877653 35778999999999999999999999999
Q ss_pred HHHHhhcCCCcccCCceEEEEeecCCc-c-hhHhHHHHHHHHHHHhcCCeEeecc---eec-----------------cC
Q 007567 184 KWFTEQKEGGEWLQKLKYGVFGLGNRQ-Y-EHFNKIAKVVDEILANQGAKRLVPV---GLG-----------------DD 241 (598)
Q Consensus 184 ~~L~~~~~~~~~l~~~~yaVFGLGds~-Y-~~Fn~~~k~ld~~L~~lGA~ri~~~---g~g-----------------D~ 241 (598)
+.+... .|+++++++||+||+. | ++||.+.+.+++.|+++|++.+... |.. |.
T Consensus 71 ~~~~~~-----~l~~k~vaifg~g~~~~~~~~~~~~~~~l~~~l~~~g~~~vg~~~~~gy~~~~~~~~~~~~~~g~~~d~ 145 (169)
T PRK09267 71 PELEEI-----DFSGKKVALFGLGDQEDYAEYFCDAMGTLYDIVEPRGATIVGHWPTDGYTFEASKAVDDGKFVGLALDE 145 (169)
T ss_pred HHHhcC-----CCCCCEEEEEecCCCCcchHHHHHHHHHHHHHHHHCCCEEECccCCCCccccccceeeCCEEEEEEecC
Confidence 887542 5889999999999985 8 8999999999999999998866541 111 11
Q ss_pred CC---CchHHHHHHHHHHHHHH
Q 007567 242 DQ---CIEDDFSAWRELVWPEL 260 (598)
Q Consensus 242 ~~---~~e~~f~~W~~~l~~~L 260 (598)
+. -.++.+++|.++|.+++
T Consensus 146 ~~~~~~td~~i~~w~~~i~~~~ 167 (169)
T PRK09267 146 DNQSELTDERIEAWVKQIKPEF 167 (169)
T ss_pred CCchhhhHHHHHHHHHHHHHHh
Confidence 11 13678899999987754
No 30
>cd06182 CYPOR_like NADPH cytochrome p450 reductase (CYPOR) serves as an electron donor in several oxygenase systems and is a component of nitric oxide synthases and methionine synthase reductases. CYPOR transfers two electrons from NADPH to the heme of cytochrome p450 via FAD and FMN. CYPOR has a C-terminal ferredoxin reducatase (FNR)- like FAD and NAD binding module, an FMN-binding domain, and an additional conecting domain (inserted within the FAD binding region) that orients the FNR and FMN binding domains. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria and participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-t
Probab=99.66 E-value=1.5e-15 Score=156.26 Aligned_cols=92 Identities=45% Similarity=0.887 Sum_probs=79.8
Q ss_pred CcccccCCCCCCCCCeEEEEEEEEEeeCCCCCcccCcchHHhhccCCCCCCCCCceEEEEEeCC-CccCCCCCCCcEEEE
Q 007567 492 PRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLCSTWMKNSLPMEKSNDCSWAPIFVRQS-NFKLPADAKVPIIMI 570 (598)
Q Consensus 492 pR~YSIsSsp~~~~~~i~itv~~v~~~~~~g~~~~G~~S~~L~~~~~~~~~~~~~~~~i~v~~s-~F~lp~~~~~PiImI 570 (598)
+|.|||||+|...++.++|+|+.+.+....+..+.|.||+||.++++++ .+.|..+.+ .|.++.+...|+|||
T Consensus 48 ~R~ySias~p~~~~~~l~l~Ik~~~~~~~~~~~~~G~~S~~L~~lk~Gd------~v~v~~p~G~~f~l~~~~~~~~vlI 121 (267)
T cd06182 48 PRYYSIASSPDVDPGEVHLCVRVVSYEAPAGRIRKGVCSNFLAGLQLGA------KVTVFIRPAPSFRLPKDPTTPIIMV 121 (267)
T ss_pred CeeEeecCCCCCCCCEEEEEEEEEEEecCCCCeeccchhHHHhhCCCCC------EEEEEEecCCcccCCCCCCCCEEEE
Confidence 5899999999765689999999887766677778899999999887653 577778888 899998877999999
Q ss_pred eCCCChHhHHHHHHHHhhc
Q 007567 571 GPGTGLAPFRGSWSRTGTL 589 (598)
Q Consensus 571 g~GTGiAPfr~flqer~~~ 589 (598)
|+|||||||+++++++...
T Consensus 122 AgGtGIaP~~s~l~~~~~~ 140 (267)
T cd06182 122 GPGTGIAPFRGFLQERAAL 140 (267)
T ss_pred ecCccHHHHHHHHHHHHHh
Confidence 9999999999999998864
No 31
>TIGR03224 benzo_boxA benzoyl-CoA oxygenase/reductase, BoxA protein. Members of this protein family are BoxA, the A component of the BoxAB benzoyl-CoA oxygenase/reductase. This oxygen-requiring enzyme acts in an aerobic pathway of benzoate catabolism via coenzyme A ligation. BoxA is a homodimeric iron-sulphur-flavoprotein and acts as an NADPH-dependent reductase for BoxB.
Probab=99.63 E-value=4.8e-15 Score=161.35 Aligned_cols=153 Identities=20% Similarity=0.313 Sum_probs=118.6
Q ss_pred ccCCCCCeeeEEeeeecccCCCCCCceeEEEEeecCCCCccCCCCeeEEecCCCHHHHHHHHHHcCCCCCcEEEEecCCC
Q 007567 309 VYDAQHPCRSNVAVRKELHTPSSDRSCTHLEFDIAGTGLTYETGDHVGVYCENLSETVEEALSLLGLSPDTYFSLHTDKE 388 (598)
Q Consensus 309 ~~d~~~p~~a~v~~~~eL~~~~s~rs~~hie~di~~~~l~Y~~GD~l~V~P~N~~~~Ve~~l~~Lgl~~d~~~~i~~~~~ 388 (598)
.|..++|+.|+|+.+++|+.......++||.|+..+....|+||.++.|.++... +
T Consensus 136 ~~~~~~~~~a~V~~~~~l~~~~~~~~v~~l~L~~~~~~~~~~pGQfv~l~~pg~~------------------------~ 191 (411)
T TIGR03224 136 LYGVKAPITATVVGNYRLTDEDASSDIHHIVLDFGSHPFPVLEGQSIGILPPGTD------------------------A 191 (411)
T ss_pred cccCCCCeEEEEeeeEEccCCCCCCceEEEEEeCCCCcCCccCCcEEEEecCCcC------------------------c
Confidence 3677889999999999998766677899999998765689999999988654210 0
Q ss_pred CCCCCCCCCCCCCCCcccHHHHHHhccccCCCccHHHHHHHHHhCCChhHHHHHHHhcCccCHHHHHHHHHHcCCCHHHH
Q 007567 389 DGTPLGKSTLPPTFPPCSLRTALTKYADLLSSPKKSALLALAAHASDPTEADRLRHLASPAGKDEYAQWIVASQRSLLEV 468 (598)
Q Consensus 389 ~~~~~~~~~~~~pfpp~Tl~~~L~~y~DL~~~p~k~~l~~La~~a~d~~ek~~L~~Las~~gk~~y~~~i~~~~~sl~dv 468 (598)
+|
T Consensus 192 ------------------------------------------------------------~g------------------ 193 (411)
T TIGR03224 192 ------------------------------------------------------------SG------------------ 193 (411)
T ss_pred ------------------------------------------------------------CC------------------
Confidence 00
Q ss_pred HhhCCCCCCChhhhHhhhcCCCCCcccccCCCCCCC---CCeEEEEEEEEEeeCCCCCcccCcchHHhhccCCCCCCCCC
Q 007567 469 MSEFPSAKPPLGVFFAAIVPRLQPRYYSISSSPRVA---PSRIHVTCALVYEKTPTGRVHKGLCSTWMKNSLPMEKSNDC 545 (598)
Q Consensus 469 L~~fps~~~pl~~ll~~i~p~l~pR~YSIsSsp~~~---~~~i~itv~~v~~~~~~g~~~~G~~S~~L~~~~~~~~~~~~ 545 (598)
.+...|.|||+|+|... .+.++|+|++|. ....|+.+.|+||+||+++++++
T Consensus 194 -------------------~~~~~R~YSIas~~~~~~~~~~~l~l~Vk~v~-~~~~g~~~~G~~S~~L~~lk~Gd----- 248 (411)
T TIGR03224 194 -------------------KPHYARMYSVASPRNGERPGYNNLALTVKRVT-TDHQGNAVRGVASNYLCDLKKGD----- 248 (411)
T ss_pred -------------------CcCcceeeeecCCCCccCCCCCEEEEEEEEEE-ecCCCCcCcccchhHHhcCCCcC-----
Confidence 01235999999987421 257999999885 24567778999999999987764
Q ss_pred ceEEEEEeCCC-ccCCCCCCCcEEEEeCCCChHhHHHHHHHHhhc
Q 007567 546 SWAPIFVRQSN-FKLPADAKVPIIMIGPGTGLAPFRGSWSRTGTL 589 (598)
Q Consensus 546 ~~~~i~v~~s~-F~lp~~~~~PiImIg~GTGiAPfr~flqer~~~ 589 (598)
.+.|..+.|+ |.+|..+.+|+||||+||||||||||++++...
T Consensus 249 -~v~v~GP~G~~f~lp~~~~~~lllIagGtGIAP~~s~l~~~~~~ 292 (411)
T TIGR03224 249 -KVQVIGPFGSTFLMPNHPESSIMMICTGTGSAPMRAMTERRRRR 292 (411)
T ss_pred -EEEEEeccCCcccCCCCCCCCEEEEecccCcHHHHHHHHHHHHH
Confidence 5667667776 677766678999999999999999999998753
No 32
>TIGR00333 nrdI ribonucleoside-diphosphate reductase 2, operon protein nrdI. Ribonucleotide reductases (RNRs) are enzymes that provide the precursors of DNA synthesis. The three characterized classes of RNRs differ by their metal cofactor and their stable organic radical. The exact function of nrdI within the ribonucleotide reductases has not yet been fully characterised.
Probab=99.63 E-value=1.1e-15 Score=138.90 Aligned_cols=92 Identities=23% Similarity=0.360 Sum_probs=71.8
Q ss_pred EEEeCCCchHHHHHHHHHHHHHhhcCCceeEEEcCCCCCCcchHHHHhhccCCeEEEEEecCCCCCcchHHHHHHHHHHh
Q 007567 109 IFFGTQTGTAEGFAKALADEARARYDKAIFKVVDIDDYADEEDEYEEKLKKENIVFFFLATYGDGEPTDNAARFYKWFTE 188 (598)
Q Consensus 109 I~YgSqTGtae~~A~~la~~l~~~~~~~~~~v~dl~~~~~~~~~~~~~l~~~~~vIf~~sTyG~Geppdna~~F~~~L~~ 188 (598)
|+|+|+|||||+|++++.- .+..+.+++.++ ..+ .++.+++ ++|||+|+.|+.+.+|++.+.+
T Consensus 1 IvY~S~TGNte~fv~~lg~---------~~~~i~~~~~d~------~~~-~~~~vli-TyT~G~G~vP~~~~~Fle~~~n 63 (125)
T TIGR00333 1 IYFSSKTGNVQRFVEKLGF---------QHIRIPVDETDD------IHV-DQEFVLI-TYTGGFGAVPKQTISFLNKKHN 63 (125)
T ss_pred CEEEcccccHHHHHHHcCC---------CcEEeecCCcch------hhc-CCCEEEE-ecCCCCCcCCHHHHHHHHhhhh
Confidence 6899999999999554421 123345554332 123 5565555 9999999999999999987752
Q ss_pred hcCCCcccCCceEEEEeecCCcc-hhHhHHHHHHHHHHHh
Q 007567 189 QKEGGEWLQKLKYGVFGLGNRQY-EHFNKIAKVVDEILAN 227 (598)
Q Consensus 189 ~~~~~~~l~~~~yaVFGLGds~Y-~~Fn~~~k~ld~~L~~ 227 (598)
+.+||||.||++| ++||.+++.+.+++..
T Consensus 64 ----------~~~gV~gSGn~n~g~~fc~A~d~ia~~~~~ 93 (125)
T TIGR00333 64 ----------LLRGVAASGNKVWGDNFALAGDVISRKLNV 93 (125)
T ss_pred ----------cEEEEEEcCCCchHHHHHHHHHHHHHHhCC
Confidence 7899999999999 9999999999999987
No 33
>cd06201 SiR_like2 Cytochrome p450- like alpha subunits of E. coli sulfite reductase (SiR) multimerize with beta subunits to catalyze the NADPH dependent reduction of sulfite to sulfide. Beta subunits have an Fe4S4 cluster and a siroheme, while the alpha subunits (cysJ gene) are of the cytochrome p450 (CyPor) family having FAD and FMN as prosthetic groups and utilizing NADPH. Cypor (including cyt -450 reductase, nitric oxide synthase, and methionine synthase reductase) are ferredoxin reductase (FNR)-like proteins with an additional N-terminal FMN domain and a connecting sub-domain inserted within the flavin binding portion of the FNR-like domain. The connecting domain orients the N-terminal FMN domain with the C-terminal FNR domain. NADPH cytochrome p450 reductase (CYPOR) serves as an electron donor in several oxygenase systems and is a component of nitric oxide synthases and methionine synthase reductases. CYPOR transfers two electrons from NADPH to the heme of cytochrome p450 via F
Probab=99.61 E-value=2.7e-14 Score=148.65 Aligned_cols=78 Identities=31% Similarity=0.616 Sum_probs=63.3
Q ss_pred CcccccCCCCCCCCCeEEEEEEEEEeeCCCCCcccCcchHHhhccCCCCCCCCCceEEEEEe-CCCccCCCCCCCcEEEE
Q 007567 492 PRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLCSTWMKNSLPMEKSNDCSWAPIFVR-QSNFKLPADAKVPIIMI 570 (598)
Q Consensus 492 pR~YSIsSsp~~~~~~i~itv~~v~~~~~~g~~~~G~~S~~L~~~~~~~~~~~~~~~~i~v~-~s~F~lp~~~~~PiImI 570 (598)
+|.|||+|+|. .+.++|+|+.+ ..|.||+||+++.+++ .+.+.++ .+.|.++. ..+|+|||
T Consensus 100 ~R~YSias~p~--~g~l~l~Vk~~---------~~G~~S~~L~~l~~Gd------~v~v~~~~~g~F~~~~-~~~~lvlI 161 (289)
T cd06201 100 PRFYSLASSSS--DGFLEICVRKH---------PGGLCSGYLHGLKPGD------TIKAFIRPNPSFRPAK-GAAPVILI 161 (289)
T ss_pred CceEecCCCCC--CCeEEEEEEeC---------CCccchhhHhhCCCcC------EEEEEeccCCCccCCC-CCCCEEEE
Confidence 59999999984 36899988754 3699999999876654 5666654 56898874 46899999
Q ss_pred eCCCChHhHHHHHHHHh
Q 007567 571 GPGTGLAPFRGSWSRTG 587 (598)
Q Consensus 571 g~GTGiAPfr~flqer~ 587 (598)
|+|||||||+|+|+++.
T Consensus 162 AgGtGIaP~~s~l~~~~ 178 (289)
T cd06201 162 GAGTGIAPLAGFIRANA 178 (289)
T ss_pred ecCcCHHHHHHHHHhhh
Confidence 99999999999999863
No 34
>PRK02551 flavoprotein NrdI; Provisional
Probab=99.58 E-value=5.8e-15 Score=138.81 Aligned_cols=141 Identities=20% Similarity=0.287 Sum_probs=92.0
Q ss_pred CceEEEEEeCCCchHHHHHHHHHHHHHhhcCCceeEEEcCCCCCCcchHHHHhhccCCeEEEEEecC-CCCCcchHHHHH
Q 007567 104 KQKVTIFFGTQTGTAEGFAKALADEARARYDKAIFKVVDIDDYADEEDEYEEKLKKENIVFFFLATY-GDGEPTDNAARF 182 (598)
Q Consensus 104 ~~~v~I~YgSqTGtae~~A~~la~~l~~~~~~~~~~v~dl~~~~~~~~~~~~~l~~~~~vIf~~sTy-G~Geppdna~~F 182 (598)
|+++.|+|.|+||||+.||++|...+++.........+++.++..++. ..+.....+|+++||| |.|++|+++.+
T Consensus 1 ~~~~~I~Y~S~TGNt~rFv~kL~~~~~~~~~~~~~~~i~~~~~i~~~~---~~~~~~~p~vli~pTY~~gG~~~~~~~~- 76 (154)
T PRK02551 1 MKTITLVYISLSGNTRSFVKRLSDYLATQHKDIEVNPINIKDLIHETT---DFFPETEPFVAFLPTYLEGGNGIDNGDV- 76 (154)
T ss_pred CCceEEEEEeCChhHHHHHHHHhcHHhhccccccceecccccccCccc---cccccCCCEEEEEeeecCCCCCcccCcc-
Confidence 367999999999999999999998765421011223456655543210 1245667899999999 88877766544
Q ss_pred HHHHHhhcC---CCcccCCceEEEEeecCCcc-hhHhHHHHHHHHHHHhcCCeEeecceeccCCCCchHHHHHHHHHH
Q 007567 183 YKWFTEQKE---GGEWLQKLKYGVFGLGNRQY-EHFNKIAKVVDEILANQGAKRLVPVGLGDDDQCIEDDFSAWRELV 256 (598)
Q Consensus 183 ~~~L~~~~~---~~~~l~~~~yaVFGLGds~Y-~~Fn~~~k~ld~~L~~lGA~ri~~~g~gD~~~~~e~~f~~W~~~l 256 (598)
+|+.+... .....+++.+||||+||++| +.||.+|+++++.+ +..-|+.. +-.+..+|++.-.+.|
T Consensus 77 -~~vp~~v~dFL~~~~N~~~~~gVigsGNrNfg~~F~~aa~~ia~~~---~vP~L~~f----El~GT~~Dv~~v~~~~ 146 (154)
T PRK02551 77 -EILTTPLGDFIAYHDNAKRCLGIIGSGNRNFNNQYCLTAKQYAKRF---GFPMLADF----ELRGTPSDIERIAAII 146 (154)
T ss_pred -ccchHHHHHHHcchhhhhheEEEEeecccHHHHHHHHHHHHHHHHc---CCCEEEEe----eccCCHHHHHHHHHHH
Confidence 33222100 01123678999999999999 89999999999765 54444433 2335556655544433
No 35
>PRK11921 metallo-beta-lactamase/flavodoxin domain-containing protein; Provisional
Probab=99.58 E-value=1.7e-14 Score=156.42 Aligned_cols=146 Identities=15% Similarity=0.129 Sum_probs=114.2
Q ss_pred cCCceEEEEEeCCCchHHHHHHHHHHHHHhhcCCceeEEEcCCCCCCcchHHHHhhccCCeEEEEEecCCCCCcchHHHH
Q 007567 102 DGKQKVTIFFGTQTGTAEGFAKALADEARARYDKAIFKVVDIDDYADEEDEYEEKLKKENIVFFFLATYGDGEPTDNAAR 181 (598)
Q Consensus 102 ~~~~~v~I~YgSqTGtae~~A~~la~~l~~~~~~~~~~v~dl~~~~~~~~~~~~~l~~~~~vIf~~sTyG~Geppdna~~ 181 (598)
..+++|+|+|+|+|||||++|+.|++.+.+...+..++++++.+.+.++ +..++.+.+.+||++|||+.|.+| .+..
T Consensus 245 ~~~~kv~IvY~S~~GnTe~mA~~ia~g~~~~~~g~~v~~~~~~~~~~~~--i~~~~~~~d~ii~GspT~~~~~~~-~~~~ 321 (394)
T PRK11921 245 YQENQVTILYDTMWNSTRRMAEAIAEGIKKANKDVTVKLYNSAKSDKND--IITEVFKSKAILVGSSTINRGILS-STAA 321 (394)
T ss_pred CCcCcEEEEEECCchHHHHHHHHHHHHHhhcCCCCeEEEEECCCCCHHH--HHHHHHhCCEEEEECCCcCccccH-HHHH
Confidence 3568899999999999999999999999732223567889998876532 334566799999999999888875 5999
Q ss_pred HHHHHHhhcCCCcccCCceEEEEeecCCcchhHhHHHHHHHHHHHhcCCeEeecceeccCC--CCchHHHHHHHHHHHHH
Q 007567 182 FYKWFTEQKEGGEWLQKLKYGVFGLGNRQYEHFNKIAKVVDEILANQGAKRLVPVGLGDDD--QCIEDDFSAWRELVWPE 259 (598)
Q Consensus 182 F~~~L~~~~~~~~~l~~~~yaVFGLGds~Y~~Fn~~~k~ld~~L~~lGA~ri~~~g~gD~~--~~~e~~f~~W~~~l~~~ 259 (598)
|+++|... .++|+++++|| +|.|||.+.+.+.++|+++|++.+.+.....-. ....+.+.+|-++|.+.
T Consensus 322 ~l~~l~~~-----~~~~K~~a~FG----sygw~g~a~~~~~~~l~~~g~~~v~~~~~~~~~p~~~~~~~~~~~g~~la~~ 392 (394)
T PRK11921 322 ILEEIKGL-----GFKNKKAAAFG----SYGWSGESVKIITERLKKAGFEIVNDGIRELWNPDDEALDRCRSFGENFAES 392 (394)
T ss_pred HHHHhhcc-----CcCCCEEEEEe----cCCCccHHHHHHHHHHHHCCCEEccCcEEEEeCCCHHHHHHHHHHHHHHHHh
Confidence 99998754 58899999999 599999999999999999999998764433222 12344557777776543
No 36
>PRK05452 anaerobic nitric oxide reductase flavorubredoxin; Provisional
Probab=99.55 E-value=4.5e-14 Score=156.41 Aligned_cols=146 Identities=13% Similarity=0.092 Sum_probs=114.8
Q ss_pred CCceEEEEEeCCCchHHHHHHHHHHHHHhhcCCceeEEEcCCCCCCcchHHHHhhccCCeEEEEEecCCCCCcchHHHHH
Q 007567 103 GKQKVTIFFGTQTGTAEGFAKALADEARARYDKAIFKVVDIDDYADEEDEYEEKLKKENIVFFFLATYGDGEPTDNAARF 182 (598)
Q Consensus 103 ~~~~v~I~YgSqTGtae~~A~~la~~l~~~~~~~~~~v~dl~~~~~~~~~~~~~l~~~~~vIf~~sTyG~Geppdna~~F 182 (598)
.+++|+|+|+|+|||||++|+.|++.+++.+.++.+++.++++.+.++ +..++.+.+.+||++|||++|.+| .++.|
T Consensus 250 ~~~kv~IvY~S~~GnTe~mA~~ia~gl~~~g~gv~v~~~~v~~~~~~~--i~~~~~~ad~vilGspT~~~~~~p-~~~~f 326 (479)
T PRK05452 250 QEDRITIFYDTMSNNTRMMADAIAQGIAEVDPRVAVKIFNVARSDKNE--ILTNVFRSKGVLVGSSTMNNVMMP-KIAGL 326 (479)
T ss_pred CcCcEEEEEECCccHHHHHHHHHHHHHHhhCCCceEEEEECCCCCHHH--HHhHHhhCCEEEEECCccCCcchH-HHHHH
Confidence 467899999999999999999999999877544677889998877543 233445689999999999877777 69999
Q ss_pred HHHHHhhcCCCcccCCceEEEEeecCCcchhHhHHHHHHHHHHHhcCCeEeecceeccC--CCCchHHHHHHHHHHHHHH
Q 007567 183 YKWFTEQKEGGEWLQKLKYGVFGLGNRQYEHFNKIAKVVDEILANQGAKRLVPVGLGDD--DQCIEDDFSAWRELVWPEL 260 (598)
Q Consensus 183 ~~~L~~~~~~~~~l~~~~yaVFGLGds~Y~~Fn~~~k~ld~~L~~lGA~ri~~~g~gD~--~~~~e~~f~~W~~~l~~~L 260 (598)
++.|... .++|+++++|| +|.|+|.+.+.+.++|+++|++.+.+ ..... +....+.+.++-++|.+++
T Consensus 327 l~~l~~~-----~l~gK~~~vFG----Sygw~g~a~~~~~~~l~~~g~~~~~~-l~~~~~P~ee~~~~~~~~g~~la~~~ 396 (479)
T PRK05452 327 LEEITGL-----RFRNKRASAFG----SHGWSGGAVDRLSTRLQDAGFEMSLS-LKAKWRPDQDALELCREHGREIARQW 396 (479)
T ss_pred HHHhhcc-----CcCCCEEEEEE----CCCcCcHHHHHHHHHHHHCCCEEecc-EEEEecCCHHHHHHHHHHHHHHHHHH
Confidence 9988753 58999999999 68999999999999999999998633 22222 1123445667777777666
Q ss_pred H
Q 007567 261 D 261 (598)
Q Consensus 261 ~ 261 (598)
.
T Consensus 397 ~ 397 (479)
T PRK05452 397 A 397 (479)
T ss_pred h
Confidence 5
No 37
>PRK05569 flavodoxin; Provisional
Probab=99.52 E-value=2.5e-13 Score=126.08 Aligned_cols=116 Identities=20% Similarity=0.230 Sum_probs=95.5
Q ss_pred CceEEEEEeCCCchHHHHHHHHHHHHHhhcCCceeEEEcCCCCCCcchHHHHhhccCCeEEEEEecCCCCCcc-hHHHHH
Q 007567 104 KQKVTIFFGTQTGTAEGFAKALADEARARYDKAIFKVVDIDDYADEEDEYEEKLKKENIVFFFLATYGDGEPT-DNAARF 182 (598)
Q Consensus 104 ~~~v~I~YgSqTGtae~~A~~la~~l~~~~~~~~~~v~dl~~~~~~~~~~~~~l~~~~~vIf~~sTyG~Gepp-dna~~F 182 (598)
|++++|+|+|+||||+.+|+.|++.+.+.+ ..+++.++.+.+. .++.+++.+||++|||+.|.+| +.+..|
T Consensus 1 m~ki~iiY~S~tGnT~~iA~~i~~~~~~~g--~~v~~~~~~~~~~------~~~~~~d~iilgsPty~~~~~~~~~~~~~ 72 (141)
T PRK05569 1 MKKVSIIYWSCGGNVEVLANTIADGAKEAG--AEVTIKHVADAKV------EDVLEADAVAFGSPSMDNNNIEQEEMAPF 72 (141)
T ss_pred CCeEEEEEECCCCHHHHHHHHHHHHHHhCC--CeEEEEECCcCCH------HHHhhCCEEEEECCCcCCCcCChHHHHHH
Confidence 358999999999999999999999998765 4578888887764 3577899999999999887764 799999
Q ss_pred HHHHHhhcCCCcccCCceEEEEeecCCcchhH-hHHHHHHHHHHHhcCCeEeecc
Q 007567 183 YKWFTEQKEGGEWLQKLKYGVFGLGNRQYEHF-NKIAKVVDEILANQGAKRLVPV 236 (598)
Q Consensus 183 ~~~L~~~~~~~~~l~~~~yaVFGLGds~Y~~F-n~~~k~ld~~L~~lGA~ri~~~ 236 (598)
++.|... .++++++++||. |.+. +.+.+.+.+.|++.|++.+.+.
T Consensus 73 ~~~l~~~-----~~~~K~v~~f~t----~g~~~~~~~~~~~~~l~~~g~~~~~~~ 118 (141)
T PRK05569 73 LDQFKLT-----PNENKKCILFGS----YGWDNGEFMKLWKDRMKDYGFNVIGDL 118 (141)
T ss_pred HHHhhcc-----CcCCCEEEEEeC----CCCCCCcHHHHHHHHHHHCCCeEeeeE
Confidence 9988643 368999999995 4443 5677889999999999877653
No 38
>PRK05568 flavodoxin; Provisional
Probab=99.52 E-value=2.3e-13 Score=126.37 Aligned_cols=114 Identities=19% Similarity=0.260 Sum_probs=94.3
Q ss_pred CceEEEEEeCCCchHHHHHHHHHHHHHhhcCCceeEEEcCCCCCCcchHHHHhhccCCeEEEEEecCCCCCc-chHHHHH
Q 007567 104 KQKVTIFFGTQTGTAEGFAKALADEARARYDKAIFKVVDIDDYADEEDEYEEKLKKENIVFFFLATYGDGEP-TDNAARF 182 (598)
Q Consensus 104 ~~~v~I~YgSqTGtae~~A~~la~~l~~~~~~~~~~v~dl~~~~~~~~~~~~~l~~~~~vIf~~sTyG~Gep-pdna~~F 182 (598)
|++++|+|+|+||||+++|+.|++.+.+.+ ..++++++.+.+. .++.+++.+||++|||+.|.+ |..+..|
T Consensus 1 m~~~~IvY~S~~GnT~~~a~~i~~~~~~~g--~~v~~~~~~~~~~------~~~~~~d~iilgsp~y~~~~~~~~~~~~f 72 (142)
T PRK05568 1 MKKINIIYWSGTGNTEAMANLIAEGAKENG--AEVKLLNVSEASV------DDVKGADVVALGSPAMGDEVLEEGEMEPF 72 (142)
T ss_pred CCeEEEEEECCCchHHHHHHHHHHHHHHCC--CeEEEEECCCCCH------HHHHhCCEEEEECCccCcccccchhHHHH
Confidence 467999999999999999999999998765 4678889988764 357889999999999988886 4789999
Q ss_pred HHHHHhhcCCCcccCCceEEEEeecCCcchhH-hHHHHHHHHHHHhcCCeEeec
Q 007567 183 YKWFTEQKEGGEWLQKLKYGVFGLGNRQYEHF-NKIAKVVDEILANQGAKRLVP 235 (598)
Q Consensus 183 ~~~L~~~~~~~~~l~~~~yaVFGLGds~Y~~F-n~~~k~ld~~L~~lGA~ri~~ 235 (598)
++.+.. .++++++++||. |.|- ..+.+.+.+.|+++|++.+.+
T Consensus 73 ~~~~~~------~~~~k~~~~f~t----~G~~~~~~~~~~~~~l~~~g~~~~~~ 116 (142)
T PRK05568 73 VESISS------LVKGKKLVLFGS----YGWGDGEWMRDWVERMEGYGANLVNE 116 (142)
T ss_pred HHHhhh------hhCCCEEEEEEc----cCCCCChHHHHHHHHHHHCCCEEeCC
Confidence 988753 368999999996 3332 456788999999999998776
No 39
>PRK03600 nrdI ribonucleotide reductase stimulatory protein; Reviewed
Probab=99.51 E-value=1.2e-13 Score=127.42 Aligned_cols=124 Identities=21% Similarity=0.334 Sum_probs=88.2
Q ss_pred eEEEEEeCCCchHHHHHHHHHHHHHhhcCCceeEEEcCCCCCCcchHHHHhhccCCeEEEEEecCCC----CCcchHHHH
Q 007567 106 KVTIFFGTQTGTAEGFAKALADEARARYDKAIFKVVDIDDYADEEDEYEEKLKKENIVFFFLATYGD----GEPTDNAAR 181 (598)
Q Consensus 106 ~v~I~YgSqTGtae~~A~~la~~l~~~~~~~~~~v~dl~~~~~~~~~~~~~l~~~~~vIf~~sTyG~----Geppdna~~ 181 (598)
.+.|+|.|.|||++.||++|.... ..+++++.+ .+..+..+++++||||+ |+.|+...+
T Consensus 2 ~~~I~Y~S~TGNt~~f~~kl~~~~---------~~i~i~~~~--------~~~~~~~~~lv~PTy~~g~~~G~vP~~v~~ 64 (134)
T PRK03600 2 MMLVYFSSKTGNTHRFVQKLGLPA---------TRIPINERE--------RLEVDEPYILITPTYGGGGTAGAVPKQVIR 64 (134)
T ss_pred cEEEEEECCChhHHHHHHHhCCcc---------eEEecCCCc--------cccCCCCEEEEEeccCCCCcCCcccHHHHH
Confidence 578999999999999998886531 234554321 24456689999999999 699999999
Q ss_pred HHHHHHhhcCCCcccCCceEEEEeecCCcc-hhHhHHHHHHHHHHHhcCCeEeecceeccCCCCchHHHHHHHHHHHH
Q 007567 182 FYKWFTEQKEGGEWLQKLKYGVFGLGNRQY-EHFNKIAKVVDEILANQGAKRLVPVGLGDDDQCIEDDFSAWRELVWP 258 (598)
Q Consensus 182 F~~~L~~~~~~~~~l~~~~yaVFGLGds~Y-~~Fn~~~k~ld~~L~~lGA~ri~~~g~gD~~~~~e~~f~~W~~~l~~ 258 (598)
|++.+.+ ....++|||.||++| ++||.+++.+.+++. ...++.. +..-.....+.+..|.+++|.
T Consensus 65 Fl~~~~n--------~~~~~gV~gsGnr~~g~~f~~a~~~i~~~~~---vp~l~k~-El~gt~~Dv~~~~~~~~~~~~ 130 (134)
T PRK03600 65 FLNDEHN--------RKLLRGVIASGNRNFGDAFALAGDVISAKCQ---VPLLYRF-ELSGTNEDVENVRKGVEEFWQ 130 (134)
T ss_pred HHhcccc--------CCcEEEEEEecCchHHHHHHHHHHHHHHHhC---CCeEEEE-ecCCCHHHHHHHHHHHHHHHh
Confidence 9877432 246899999999999 899999999999976 2222211 111111124456778777765
No 40
>PLN03116 ferredoxin--NADP+ reductase; Provisional
Probab=99.45 E-value=3.3e-13 Score=141.61 Aligned_cols=154 Identities=27% Similarity=0.420 Sum_probs=114.0
Q ss_pred cCCCCCeeeEEeeeecccCCCCCCceeEEEEeecCCCCccCCCCeeEEecCCCHHHHHHHHHHcCCCCCcEEEEecCCCC
Q 007567 310 YDAQHPCRSNVAVRKELHTPSSDRSCTHLEFDIAGTGLTYETGDHVGVYCENLSETVEEALSLLGLSPDTYFSLHTDKED 389 (598)
Q Consensus 310 ~d~~~p~~a~v~~~~eL~~~~s~rs~~hie~di~~~~l~Y~~GD~l~V~P~N~~~~Ve~~l~~Lgl~~d~~~~i~~~~~~ 389 (598)
|....|+.++|+..+.++.|.+..++++|.|+.+ ..+.|++|.++.|.++...
T Consensus 19 ~~~~~~~~~~V~~i~~~~~p~~~~~v~~l~l~~~-~~~~f~aGQy~~l~~~~~~-------------------------- 71 (307)
T PLN03116 19 YKPKAPYTATIVSVERIVGPKAPGETCHIVIDHG-GNVPYWEGQSYGVIPPGTN-------------------------- 71 (307)
T ss_pred ccCCCCEEEEEEeeEEcccCCCCCceEEEEEecC-CCCceecCceEeeeCCCCC--------------------------
Confidence 4456788999999999987777778999999976 4789999999988654210
Q ss_pred CCCCCCCCCCCCCCcccHHHHHHhccccCCCccHHHHHHHHHhCCChhHHHHHHHhcCccCHHHHHHHHHHcCCCHHHHH
Q 007567 390 GTPLGKSTLPPTFPPCSLRTALTKYADLLSSPKKSALLALAAHASDPTEADRLRHLASPAGKDEYAQWIVASQRSLLEVM 469 (598)
Q Consensus 390 ~~~~~~~~~~~pfpp~Tl~~~L~~y~DL~~~p~k~~l~~La~~a~d~~ek~~L~~Las~~gk~~y~~~i~~~~~sl~dvL 469 (598)
+. .
T Consensus 72 -------------------------------~~----------------------------~------------------ 74 (307)
T PLN03116 72 -------------------------------PK----------------------------K------------------ 74 (307)
T ss_pred -------------------------------hh----------------------------h------------------
Confidence 00 0
Q ss_pred hhCCCCCCChhhhHhhhcCCCCCcccccCCCCCCC---CCeEEEEEEEEEeeCC-CC--C-cccCcchHHhhccCCCCCC
Q 007567 470 SEFPSAKPPLGVFFAAIVPRLQPRYYSISSSPRVA---PSRIHVTCALVYEKTP-TG--R-VHKGLCSTWMKNSLPMEKS 542 (598)
Q Consensus 470 ~~fps~~~pl~~ll~~i~p~l~pR~YSIsSsp~~~---~~~i~itv~~v~~~~~-~g--~-~~~G~~S~~L~~~~~~~~~ 542 (598)
+ - .+...|.|||||+|... ..+|+|+|+++.+..+ ++ . ...|++|+||+++.+++
T Consensus 75 ---~-----------g--~~~~~R~YSIaS~p~~~~~~~~~lel~Vr~~~~~~~~~~~~~~~~~G~~S~~L~~l~~Gd-- 136 (307)
T PLN03116 75 ---P-----------G--APHNVRLYSIASTRYGDDFDGKTASLCVRRAVYYDPETGKEDPAKKGVCSNFLCDAKPGD-- 136 (307)
T ss_pred ---c-----------C--CcCCceeEEecCCCCCcCCCCCEEEEEEEEEEEecCCcCCCCCccCcchhhhHhhCCCCC--
Confidence 0 0 12246999999999532 2389999988754432 22 2 26899999999976653
Q ss_pred CCCceEEEEEeCCCccC-CC-CCCCcEEEEeCCCChHhHHHHHHHHhhc
Q 007567 543 NDCSWAPIFVRQSNFKL-PA-DAKVPIIMIGPGTGLAPFRGSWSRTGTL 589 (598)
Q Consensus 543 ~~~~~~~i~v~~s~F~l-p~-~~~~PiImIg~GTGiAPfr~flqer~~~ 589 (598)
.+.|..+.|.|.+ |. +...|+||||+|||||||+|||++....
T Consensus 137 ----~v~v~gP~G~f~~~~~~~~~~~~vlIAgGtGIaP~~sml~~~l~~ 181 (307)
T PLN03116 137 ----KVQITGPSGKVMLLPEEDPNATHIMVATGTGIAPFRGFLRRMFME 181 (307)
T ss_pred ----EEEEEEecCCceeCCCCCCCCcEEEEecCccHHHHHHHHHHHHhh
Confidence 5677777888876 53 5568999999999999999999987653
No 41
>cd06200 SiR_like1 Cytochrome p450- like alpha subunits of E. coli sulfite reductase (SiR) multimerize with beta subunits to catalyze the NADPH dependent reduction of sulfite to sulfide. Beta subunits have an Fe4S4 cluster and a siroheme, while the alpha subunits (cysJ gene) are of the cytochrome p450 (CyPor) family having FAD and FMN as prosthetic groups and utilizing NADPH. Cypor (including cyt -450 reductase, nitric oxide synthase, and methionine synthase reductase) are ferredoxin reductase (FNR)-like proteins with an additional N-terminal FMN domain and a connecting sub-domain inserted within the flavin binding portion of the FNR-like domain. The connecting domain orients the N-terminal FMN domain with the C-terminal FNR domain. NADPH cytochrome p450 reductase (CYPOR) serves as an electron donor in several oxygenase systems and is a component of nitric oxide synthases and methionine synthase reductases. CYPOR transfers two electrons from NADPH to the heme of cytochrome p450 via FAD
Probab=99.44 E-value=2.4e-13 Score=138.08 Aligned_cols=98 Identities=30% Similarity=0.462 Sum_probs=73.0
Q ss_pred hhhHhhhcC-CCCCcccccCCCCCCCCCeEEEEEEEEEeeCCCCCcccCcchHHhhccCCCCCCCCCceEEEEEeC-CCc
Q 007567 480 GVFFAAIVP-RLQPRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLCSTWMKNSLPMEKSNDCSWAPIFVRQ-SNF 557 (598)
Q Consensus 480 ~~ll~~i~p-~l~pR~YSIsSsp~~~~~~i~itv~~v~~~~~~g~~~~G~~S~~L~~~~~~~~~~~~~~~~i~v~~-s~F 557 (598)
++++....+ ...+|+|||||+|. ++.++|+|+.+.. ..| +.|+||+||++....+ +.+.|..++ +.|
T Consensus 35 GQ~v~l~~~~~~~~R~YSIas~p~--~~~l~l~Vk~~~~--~~~--~~G~~S~~L~~~~~~G-----d~v~i~gp~gg~F 103 (245)
T cd06200 35 GDIAEIGPRHPLPHREYSIASLPA--DGALELLVRQVRH--ADG--GLGLGSGWLTRHAPIG-----ASVALRLRENPGF 103 (245)
T ss_pred CcEEEecCCCCCCCcceEeccCCC--CCEEEEEEEEecc--CCC--CCeeechhhhhCCCCC-----CEEEEEecCCCcc
Confidence 555532223 25789999999985 4789999987642 112 3599999999864323 356677664 579
Q ss_pred cCCCCCCCcEEEEeCCCChHhHHHHHHHHhhc
Q 007567 558 KLPADAKVPIIMIGPGTGLAPFRGSWSRTGTL 589 (598)
Q Consensus 558 ~lp~~~~~PiImIg~GTGiAPfr~flqer~~~ 589 (598)
.+|. ..+|+||||+|||||||+||++++...
T Consensus 104 ~~~~-~~~~~vlIAgGtGIaP~~s~l~~~~~~ 134 (245)
T cd06200 104 HLPD-DGRPLILIGNGTGLAGLRSHLRARARA 134 (245)
T ss_pred cCCC-CCCCEEEEecCcChHHHHHHHHHHHhc
Confidence 8876 568999999999999999999999764
No 42
>cd06208 CYPOR_like_FNR These ferredoxin reductases are related to the NADPH cytochrome p450 reductases (CYPOR), but lack the FAD-binding region connecting sub-domain. Ferredoxin-NADP+ reductase (FNR) is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins, such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap between the two domains. Ferredoxin-NADP+ reductase first accepts one electron from reduced ferredoxin to form a flavin semiquinone intermediate. The enzyme then accepts a second electron to form FADH2, which then
Probab=99.44 E-value=5.1e-13 Score=138.75 Aligned_cols=95 Identities=28% Similarity=0.380 Sum_probs=74.5
Q ss_pred CCCCcccccCCCCCCC---CCeEEEEEEEEEeeCCCC-CcccCcchHHhhccCCCCCCCCCceEEEEEeCCCccC-CCCC
Q 007567 489 RLQPRYYSISSSPRVA---PSRIHVTCALVYEKTPTG-RVHKGLCSTWMKNSLPMEKSNDCSWAPIFVRQSNFKL-PADA 563 (598)
Q Consensus 489 ~l~pR~YSIsSsp~~~---~~~i~itv~~v~~~~~~g-~~~~G~~S~~L~~~~~~~~~~~~~~~~i~v~~s~F~l-p~~~ 563 (598)
+..+|.|||||+|... ++.++|+|+++...++.+ ..+.|++|+||+++.+++ .+.|..+.|+|.+ |.+.
T Consensus 61 ~~~~R~YSIas~p~~~~~~~~~l~l~Vk~~~~~~~~~~~~~~G~~S~~L~~l~~Gd------~v~v~gP~G~~~~~~~~~ 134 (286)
T cd06208 61 PHKLRLYSIASSRYGDDGDGKTLSLCVKRLVYTDPETDETKKGVCSNYLCDLKPGD------DVQITGPVGKTMLLPEDP 134 (286)
T ss_pred CCCceeeEecCCccccCCCCCEEEEEEEEEEEecCCCCceeccchHHHHhhCCCCC------EEEEEeecCCcccCCCCC
Confidence 3457999999998642 468999999886554433 456799999999976653 5677777788765 4455
Q ss_pred CCcEEEEeCCCChHhHHHHHHHHhhc
Q 007567 564 KVPIIMIGPGTGLAPFRGSWSRTGTL 589 (598)
Q Consensus 564 ~~PiImIg~GTGiAPfr~flqer~~~ 589 (598)
..|+||||+|||||||+|||+++...
T Consensus 135 ~~~~vlIagGtGIaP~~s~l~~~~~~ 160 (286)
T cd06208 135 NATLIMIATGTGIAPFRSFLRRLFRE 160 (286)
T ss_pred CCCEEEEecCccHHHHHHHHHHHHHh
Confidence 68999999999999999999998754
No 43
>PRK06242 flavodoxin; Provisional
Probab=99.29 E-value=2.4e-11 Score=113.80 Aligned_cols=108 Identities=19% Similarity=0.230 Sum_probs=86.4
Q ss_pred ceEEEEEeCC-CchHHHHHHHHHHHHHhhcCCceeEEEcCCCCCCcchHHHHhhccCCeEEEEEecCCCCCcchHHHHHH
Q 007567 105 QKVTIFFGTQ-TGTAEGFAKALADEARARYDKAIFKVVDIDDYADEEDEYEEKLKKENIVFFFLATYGDGEPTDNAARFY 183 (598)
Q Consensus 105 ~~v~I~YgSq-TGtae~~A~~la~~l~~~~~~~~~~v~dl~~~~~~~~~~~~~l~~~~~vIf~~sTyG~Geppdna~~F~ 183 (598)
++++|+|+|+ ||||+++|+.|++.+. ++++++.+... .++.+++.+||++||| .|.+|+.++.|+
T Consensus 1 mk~~IiY~S~~tGnT~~~A~~ia~~l~-------~~~~~i~~~~~------~~~~~~d~ii~g~pvy-~~~~~~~~~~fl 66 (150)
T PRK06242 1 MKALIVYASVHHGNTEKIAKAIAEVLD-------AEVIDPGDVNP------EDLSEYDLIGFGSGIY-FGKFHKSLLKLI 66 (150)
T ss_pred CcEEEEEeCCCCCCHHHHHHHHHHhcC-------cEEecHHHCCc------ccHhHCCEEEEeCchh-cCCcCHHHHHHH
Confidence 5689999999 8999999999999873 24666665442 3467889999999999 699999999998
Q ss_pred HHHHhhcCCCcccCCceEEEEeecCCcchhHhHHHHHHHHHHHhcCCeEeecc
Q 007567 184 KWFTEQKEGGEWLQKLKYGVFGLGNRQYEHFNKIAKVVDEILANQGAKRLVPV 236 (598)
Q Consensus 184 ~~L~~~~~~~~~l~~~~yaVFGLGds~Y~~Fn~~~k~ld~~L~~lGA~ri~~~ 236 (598)
+.+. .++++++++||.+...... ..+.+.+.|+.+|++.+...
T Consensus 67 ~~~~-------~~~~k~~~~f~t~g~~~~~---~~~~l~~~l~~~g~~~~~~~ 109 (150)
T PRK06242 67 EKLP-------PVSGKKAFIFSTSGLPFLK---YHKALKKKLKEKGFEIVGEF 109 (150)
T ss_pred Hhhh-------hhcCCeEEEEECCCCCcch---HHHHHHHHHHHCCCEEEEEE
Confidence 8764 2568999999976554433 27899999999999987663
No 44
>PRK13289 bifunctional nitric oxide dioxygenase/dihydropteridine reductase 2; Provisional
Probab=99.22 E-value=2.3e-11 Score=131.90 Aligned_cols=82 Identities=17% Similarity=0.316 Sum_probs=67.5
Q ss_pred CCcccccCCCCCCCCCeEEEEEEEEEeeCCCCCcccCcchHHhhc-cCCCCCCCCCceEEEEEeCCCccCCCCCCCcEEE
Q 007567 491 QPRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLCSTWMKN-SLPMEKSNDCSWAPIFVRQSNFKLPADAKVPIIM 569 (598)
Q Consensus 491 ~pR~YSIsSsp~~~~~~i~itv~~v~~~~~~g~~~~G~~S~~L~~-~~~~~~~~~~~~~~i~v~~s~F~lp~~~~~PiIm 569 (598)
.+|.|||+|+|. .+.++|+|+.+ ..|.+|+||.+ +.+|+ .+.|..+.|+|.++.+..+|+||
T Consensus 204 ~~R~ySias~p~--~~~l~~~Vk~~---------~~G~~S~~L~~~l~~Gd------~v~v~gP~G~f~l~~~~~~~~vl 266 (399)
T PRK13289 204 EIRQYSLSDAPN--GKYYRISVKRE---------AGGKVSNYLHDHVNVGD------VLELAAPAGDFFLDVASDTPVVL 266 (399)
T ss_pred ceeEEEeeeCCC--CCeEEEEEEEC---------CCCeehHHHhhcCCCCC------EEEEEcCccccccCCCCCCcEEE
Confidence 369999999986 35788888654 35999999987 66653 56666678999998767789999
Q ss_pred EeCCCChHhHHHHHHHHhhc
Q 007567 570 IGPGTGLAPFRGSWSRTGTL 589 (598)
Q Consensus 570 Ig~GTGiAPfr~flqer~~~ 589 (598)
||+|||||||+++|++....
T Consensus 267 IagGtGIaP~~s~l~~~~~~ 286 (399)
T PRK13289 267 ISGGVGITPMLSMLETLAAQ 286 (399)
T ss_pred EecCccHHHHHHHHHHHHhc
Confidence 99999999999999998654
No 45
>cd00322 FNR_like Ferredoxin reductase (FNR), an FAD and NAD(P) binding protein, was intially identified as a chloroplast reductase activity, catalyzing the electron transfer from reduced iron-sulfur protein ferredoxin to NADP+ as the final step in the electron transport mechanism of photosystem I. FNR transfers electrons from reduced ferredoxin to FAD (forming FADH2 via a semiquinone intermediate) and then transfers a hydride ion to convert NADP+ to NADPH. FNR has since been shown to utilize a variety of electron acceptors and donors and has a variety of physiological functions including nitrogen assimilation, dinitrogen fixation, steroid hydroxylation, fatty acid metabolism, oxygenase activity, and methane assimilation in many organisms. FNR has an NAD(P)-binding sub-domain of the alpha/beta class and a discrete (usually N-terminal) flavin sub-domain which vary in orientation with respect to the NAD(P) binding domain. The N-terminal moeity may contain a flavin prosthetic group (as in
Probab=99.19 E-value=6.3e-11 Score=117.26 Aligned_cols=85 Identities=27% Similarity=0.442 Sum_probs=70.1
Q ss_pred CCCcccccCCCCCCCCCeEEEEEEEEEeeCCCCCcccCcchHHhhccCCCCCCCCCceEEEEEeCCCccCCCCCCCcEEE
Q 007567 490 LQPRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLCSTWMKNSLPMEKSNDCSWAPIFVRQSNFKLPADAKVPIIM 569 (598)
Q Consensus 490 l~pR~YSIsSsp~~~~~~i~itv~~v~~~~~~g~~~~G~~S~~L~~~~~~~~~~~~~~~~i~v~~s~F~lp~~~~~PiIm 569 (598)
...|.|||+|+|.. .+.++|+|+.+. .|.+|+||.++.++ +.+.|..+.|+|.++.+...|+||
T Consensus 39 ~~~r~ySi~s~~~~-~~~~~l~vk~~~---------~G~~s~~l~~~~~G------~~v~i~gP~G~~~~~~~~~~~~v~ 102 (223)
T cd00322 39 GLRRAYSIASSPDE-EGELELTVKIVP---------GGPFSAWLHDLKPG------DEVEVSGPGGDFFLPLEESGPVVL 102 (223)
T ss_pred cceeeeeccCCCCC-CCeEEEEEEEeC---------CCchhhHHhcCCCC------CEEEEECCCcccccCcccCCcEEE
Confidence 57899999999865 368999987652 69999999988654 356677778898776666789999
Q ss_pred EeCCCChHhHHHHHHHHhhcc
Q 007567 570 IGPGTGLAPFRGSWSRTGTLS 590 (598)
Q Consensus 570 Ig~GTGiAPfr~flqer~~~~ 590 (598)
||+|||||||++++++.....
T Consensus 103 ia~G~Giap~~~~l~~~~~~~ 123 (223)
T cd00322 103 IAGGIGITPFRSMLRHLAADK 123 (223)
T ss_pred EecCCchhHHHHHHHHHHhhC
Confidence 999999999999999988653
No 46
>PRK10926 ferredoxin-NADP reductase; Provisional
Probab=99.19 E-value=4.2e-11 Score=121.96 Aligned_cols=80 Identities=18% Similarity=0.222 Sum_probs=62.9
Q ss_pred CcccccCCCCCCCCCeEEEEEEEEEeeCCCCCcccCcchHHhhccCCCCCCCCCceEEEEEeC-CCccCCCC-CCCcEEE
Q 007567 492 PRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLCSTWMKNSLPMEKSNDCSWAPIFVRQ-SNFKLPAD-AKVPIIM 569 (598)
Q Consensus 492 pR~YSIsSsp~~~~~~i~itv~~v~~~~~~g~~~~G~~S~~L~~~~~~~~~~~~~~~~i~v~~-s~F~lp~~-~~~PiIm 569 (598)
.|.|||+|+|.. +.++++|+.+ ..|.+|+||+++.+++ .+.|..+. +.|.++.. ...|+||
T Consensus 49 ~R~ySias~p~~--~~l~~~ik~~---------~~G~~S~~L~~l~~Gd------~v~i~gp~~g~f~l~~~~~~~~~vl 111 (248)
T PRK10926 49 QRAYSYVNAPDN--PDLEFYLVTV---------PEGKLSPRLAALKPGD------EVQVVSEAAGFFVLDEVPDCETLWM 111 (248)
T ss_pred EeeecccCCCCC--CeEEEEEEEe---------CCCCcChHHHhCCCCC------EEEEecCCCcceEccCCCCCCeEEE
Confidence 499999999853 4788888765 3699999999877654 45565554 56777654 3479999
Q ss_pred EeCCCChHhHHHHHHHHhh
Q 007567 570 IGPGTGLAPFRGSWSRTGT 588 (598)
Q Consensus 570 Ig~GTGiAPfr~flqer~~ 588 (598)
||+|||||||+|++++...
T Consensus 112 IagGtGItP~~s~l~~~~~ 130 (248)
T PRK10926 112 LATGTAIGPYLSILQEGKD 130 (248)
T ss_pred EEeeeeHHHHHHHHHhhHh
Confidence 9999999999999998764
No 47
>cd06188 NADH_quinone_reductase Na+-translocating NADH:quinone oxidoreductase (Na+-NQR) FAD/NADH binding domain. (Na+-NQR) provides a means of storing redox reaction energy via the transmembrane translocation of Na2+ ions. The C-terminal domain resembles ferredoxin:NADP+ oxidoreductase, and has NADH and FAD binding sites. (Na+-NQR) is distinct from H+-translocating NADH:quinone oxidoreductases and noncoupled NADH:quinone oxidoreductases. The NAD(P) binding domain of ferredoxin reductase-like proteins catalyze electron transfer between an NAD(P)-binding domain of the alpha/beta class and a discrete (usually N-terminal) domain which vary in orientation with respect to the NAD(P) binding domain. The N-terminal domain of this group typically contains an iron-sulfur cluster binding domain.
Probab=99.18 E-value=7.9e-11 Score=122.11 Aligned_cols=90 Identities=18% Similarity=0.291 Sum_probs=68.7
Q ss_pred CcccccCCCCCCCCCeEEEEEEEEEeeCCCCCcccCcchHHhhccCCCCCCCCCceEEEEEeCCCccCCCCCCCcEEEEe
Q 007567 492 PRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLCSTWMKNSLPMEKSNDCSWAPIFVRQSNFKLPADAKVPIIMIG 571 (598)
Q Consensus 492 pR~YSIsSsp~~~~~~i~itv~~v~~~~~~g~~~~G~~S~~L~~~~~~~~~~~~~~~~i~v~~s~F~lp~~~~~PiImIg 571 (598)
.|.|||+|+|.. .+.++|+|++.......-+...|.+|+||.++.+++ .+.|..+.|.|.++. ...|+||||
T Consensus 86 ~R~ySias~p~~-~~~l~l~vk~~~~~~~~~~~~~G~~S~~L~~l~~Gd------~v~i~gP~G~f~l~~-~~~~~vlIA 157 (283)
T cd06188 86 SRAYSLANYPAE-EGELKLNVRIATPPPGNSDIPPGIGSSYIFNLKPGD------KVTASGPFGEFFIKD-TDREMVFIG 157 (283)
T ss_pred ccccCcCCCCCC-CCeEEEEEEEeccCCccCCCCCceehhHHhcCCCCC------EEEEECccccccccC-CCCcEEEEE
Confidence 499999999864 468999997653211111345799999999976653 566666778998864 468999999
Q ss_pred CCCChHhHHHHHHHHhhc
Q 007567 572 PGTGLAPFRGSWSRTGTL 589 (598)
Q Consensus 572 ~GTGiAPfr~flqer~~~ 589 (598)
+|||||||+++|++....
T Consensus 158 gGtGItP~~s~l~~~~~~ 175 (283)
T cd06188 158 GGAGMAPLRSHIFHLLKT 175 (283)
T ss_pred ecccHhHHHHHHHHHHhc
Confidence 999999999999987643
No 48
>COG1018 Hmp Flavodoxin reductases (ferredoxin-NADPH reductases) family 1 [Energy production and conversion]
Probab=99.17 E-value=6.3e-11 Score=121.80 Aligned_cols=84 Identities=19% Similarity=0.247 Sum_probs=69.6
Q ss_pred CCcccccCCCCCCCCCeEEEEEEEEEeeCCCCCcccCcchHHhh-ccCCCCCCCCCceEEEEEeCCCccCCCCCCCcEEE
Q 007567 491 QPRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLCSTWMK-NSLPMEKSNDCSWAPIFVRQSNFKLPADAKVPIIM 569 (598)
Q Consensus 491 ~pR~YSIsSsp~~~~~~i~itv~~v~~~~~~g~~~~G~~S~~L~-~~~~~~~~~~~~~~~i~v~~s~F~lp~~~~~PiIm 569 (598)
.-|.|||+|+|... +.+.|+|++.. .|..|+||+ ++++|+ .+.|.-+.++|.|+..+..|++|
T Consensus 52 ~~R~YSl~s~p~~~-~~~~isVk~~~---------~G~~S~~Lh~~lk~Gd------~l~v~~P~G~F~l~~~~~~~~ll 115 (266)
T COG1018 52 LLRAYSLSSAPDED-SLYRISVKRED---------GGGGSNWLHDHLKVGD------TLEVSAPAGDFVLDDLPERKLLL 115 (266)
T ss_pred eeEEEEeccCCCCC-ceEEEEEEEeC---------CCcccHHHHhcCCCCC------EEEEecCCCCccCCCCCCCcEEE
Confidence 46999999999763 67888887652 499999999 666653 56776667999999877779999
Q ss_pred EeCCCChHhHHHHHHHHhhcc
Q 007567 570 IGPGTGLAPFRGSWSRTGTLS 590 (598)
Q Consensus 570 Ig~GTGiAPfr~flqer~~~~ 590 (598)
|++|+||+||.|++|+....+
T Consensus 116 la~G~GITP~lSml~~~~~~~ 136 (266)
T COG1018 116 LAGGIGITPFLSMLRTLLDRG 136 (266)
T ss_pred EeccccHhHHHHHHHHHHHhC
Confidence 999999999999999977655
No 49
>TIGR01941 nqrF NADH:ubiquinone oxidoreductase, Na(+)-translocating, F subunit. This model represents the NqrF subunit of the six-protein, Na(+)-pumping NADH-quinone reductase of a number of marine and pathogenic Gram-negative bacteria. This oxidoreductase complex functions primarily as a sodium ion pump.
Probab=99.15 E-value=1.1e-10 Score=127.22 Aligned_cols=91 Identities=19% Similarity=0.259 Sum_probs=71.5
Q ss_pred CCCcccccCCCCCCCCCeEEEEEEEEEeeCCCCCcccCcchHHhhccCCCCCCCCCceEEEEEeCCCccCCCCCCCcEEE
Q 007567 490 LQPRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLCSTWMKNSLPMEKSNDCSWAPIFVRQSNFKLPADAKVPIIM 569 (598)
Q Consensus 490 l~pR~YSIsSsp~~~~~~i~itv~~v~~~~~~g~~~~G~~S~~L~~~~~~~~~~~~~~~~i~v~~s~F~lp~~~~~PiIm 569 (598)
...|.|||+|+|.. .+.++|+|+++.+.....+.+.|.+|+||.++.+++ .+.|..+.|+|.++. ..+|+||
T Consensus 204 ~~~R~ySias~p~~-~~~l~~~vr~~~~~~~~~~~~~G~~S~~L~~l~~Gd------~v~i~gP~G~f~l~~-~~~~lvl 275 (405)
T TIGR01941 204 ETVRAYSMANYPAE-KGIIKLNVRIATPPFINSDIPPGIMSSYIFSLKPGD------KVTISGPFGEFFAKD-TDAEMVF 275 (405)
T ss_pred ccceeecCCCCCCC-CCeEEEEEEEeccCcccCCCCCCcHHHHHhcCCCcC------EEEEEeccCCCeecC-CCCCEEE
Confidence 45699999999865 478999998763222223456799999999877654 566777789998864 5689999
Q ss_pred EeCCCChHhHHHHHHHHhh
Q 007567 570 IGPGTGLAPFRGSWSRTGT 588 (598)
Q Consensus 570 Ig~GTGiAPfr~flqer~~ 588 (598)
||+|||||||++++++...
T Consensus 276 IAgGtGIaP~lsmi~~~l~ 294 (405)
T TIGR01941 276 IGGGAGMAPMRSHIFDQLK 294 (405)
T ss_pred EecCcCcchHHHHHHHHHh
Confidence 9999999999999998664
No 50
>PRK05464 Na(+)-translocating NADH-quinone reductase subunit F; Provisional
Probab=99.15 E-value=1.1e-10 Score=127.51 Aligned_cols=92 Identities=21% Similarity=0.262 Sum_probs=73.9
Q ss_pred CCCcccccCCCCCCCCCeEEEEEEEEEeeCCCCCcccCcchHHhhccCCCCCCCCCceEEEEEeCCCccCCCCCCCcEEE
Q 007567 490 LQPRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLCSTWMKNSLPMEKSNDCSWAPIFVRQSNFKLPADAKVPIIM 569 (598)
Q Consensus 490 l~pR~YSIsSsp~~~~~~i~itv~~v~~~~~~g~~~~G~~S~~L~~~~~~~~~~~~~~~~i~v~~s~F~lp~~~~~PiIm 569 (598)
...|.|||+|.|.. .+.++|+|+++......++...|.+|+||+++.+++ .+.|..+.|+|.++ +..+|+||
T Consensus 208 ~~~R~ySias~p~~-~~~l~~~vr~~~~~~~~~~~~~G~~S~~L~~l~~Gd------~v~v~gP~G~f~~~-~~~~~ivl 279 (409)
T PRK05464 208 PVIRAYSMANYPEE-KGIIMLNVRIATPPPGNPDVPPGIMSSYIFSLKPGD------KVTISGPFGEFFAK-DTDAEMVF 279 (409)
T ss_pred ceeeeeccCCCCCC-CCeEEEEEEEeecCCCcCCCCCCchhhHHHhCCCCC------EEEEEccccCcEec-CCCceEEE
Confidence 45699999999865 468999998875554555667899999999877754 56677678999876 45689999
Q ss_pred EeCCCChHhHHHHHHHHhhc
Q 007567 570 IGPGTGLAPFRGSWSRTGTL 589 (598)
Q Consensus 570 Ig~GTGiAPfr~flqer~~~ 589 (598)
||+|||||||++++++....
T Consensus 280 IAgGtGIaP~~sml~~~l~~ 299 (409)
T PRK05464 280 IGGGAGMAPMRSHIFDQLKR 299 (409)
T ss_pred EEeccChhHHHHHHHHHHhC
Confidence 99999999999999876543
No 51
>PRK07609 CDP-6-deoxy-delta-3,4-glucoseen reductase; Validated
Probab=99.14 E-value=7.1e-11 Score=125.51 Aligned_cols=95 Identities=20% Similarity=0.301 Sum_probs=73.2
Q ss_pred hhhHhhhcCCCCCcccccCCCCCCCCCeEEEEEEEEEeeCCCCCcccCcchHHhhc-cCCCCCCCCCceEEEEEeCCCcc
Q 007567 480 GVFFAAIVPRLQPRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLCSTWMKN-SLPMEKSNDCSWAPIFVRQSNFK 558 (598)
Q Consensus 480 ~~ll~~i~p~l~pR~YSIsSsp~~~~~~i~itv~~v~~~~~~g~~~~G~~S~~L~~-~~~~~~~~~~~~~~i~v~~s~F~ 558 (598)
++++..-+|....|.|||+|+|.. .+.++|+|+++ ..|.+|+||.+ +.++ +.+.|..+.|+|.
T Consensus 135 GQfv~l~~~~~~~R~ySias~p~~-~~~l~~~ik~~---------~~G~~s~~l~~~l~~G------~~v~v~gP~G~~~ 198 (339)
T PRK07609 135 GQYIEFILKDGKRRSYSIANAPHS-GGPLELHIRHM---------PGGVFTDHVFGALKER------DILRIEGPLGTFF 198 (339)
T ss_pred CCeEEEECCCCceeeeecCCCCCC-CCEEEEEEEec---------CCCccHHHHHHhccCC------CEEEEEcCceeEE
Confidence 344432235456799999999864 46899999765 36899999975 5554 3566666778999
Q ss_pred CCCCCCCcEEEEeCCCChHhHHHHHHHHhhcc
Q 007567 559 LPADAKVPIIMIGPGTGLAPFRGSWSRTGTLS 590 (598)
Q Consensus 559 lp~~~~~PiImIg~GTGiAPfr~flqer~~~~ 590 (598)
++.....|+||||+|||||||+++|++....+
T Consensus 199 ~~~~~~~~ivlIagGtGiaP~~s~l~~~~~~~ 230 (339)
T PRK07609 199 LREDSDKPIVLLASGTGFAPIKSIVEHLRAKG 230 (339)
T ss_pred ecCCCCCCEEEEecCcChhHHHHHHHHHHhcC
Confidence 98766789999999999999999999987644
No 52
>cd06189 flavin_oxioreductase NAD(P)H dependent flavin oxidoreductases use flavin as a substrate in mediating electron transfer from iron complexes or iron proteins. Structurally similar to ferredoxin reductases, but with only 15% sequence identity, flavin reductases reduce FAD, FMN, or riboflavin via NAD(P)H. Flavin is used as a substrate, rather than a tightly bound prosthetic group as in flavoenzymes; weaker binding is due to the absence of a binding site for the AMP moeity of FAD.
Probab=99.10 E-value=1.9e-10 Score=114.83 Aligned_cols=96 Identities=23% Similarity=0.310 Sum_probs=73.5
Q ss_pred hhhhHhhhcCCCCCcccccCCCCCCCCCeEEEEEEEEEeeCCCCCcccCcchHHhhc-cCCCCCCCCCceEEEEEeCCCc
Q 007567 479 LGVFFAAIVPRLQPRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLCSTWMKN-SLPMEKSNDCSWAPIFVRQSNF 557 (598)
Q Consensus 479 l~~ll~~i~p~l~pR~YSIsSsp~~~~~~i~itv~~v~~~~~~g~~~~G~~S~~L~~-~~~~~~~~~~~~~~i~v~~s~F 557 (598)
.++++...+|....|.|||+|.|.. .+.++|+|+.+ ..|.+|+||.+ +.+++ .+.|..+.|.|
T Consensus 28 pGQ~v~l~~~~~~~r~ySi~s~~~~-~~~l~~~vk~~---------~~G~~s~~l~~~l~~G~------~v~i~gP~G~~ 91 (224)
T cd06189 28 AGQYLDLLLDDGDKRPFSIASAPHE-DGEIELHIRAV---------PGGSFSDYVFEELKENG------LVRIEGPLGDF 91 (224)
T ss_pred CCCEEEEEcCCCCceeeecccCCCC-CCeEEEEEEec---------CCCccHHHHHHhccCCC------EEEEecCCccE
Confidence 3455433335556899999999864 46899988765 26899999886 65543 46666667899
Q ss_pred cCCCCCCCcEEEEeCCCChHhHHHHHHHHhhcc
Q 007567 558 KLPADAKVPIIMIGPGTGLAPFRGSWSRTGTLS 590 (598)
Q Consensus 558 ~lp~~~~~PiImIg~GTGiAPfr~flqer~~~~ 590 (598)
.++.+...++||||+|||||||++++++.....
T Consensus 92 ~~~~~~~~~ivliagG~GiaP~~~~l~~l~~~~ 124 (224)
T cd06189 92 FLREDSDRPLILIAGGTGFAPIKSILEHLLAQG 124 (224)
T ss_pred EeccCCCCCEEEEecCcCHHHHHHHHHHHHhcC
Confidence 988766789999999999999999999987553
No 53
>cd06210 MMO_FAD_NAD_binding Methane monooxygenase (MMO) reductase of methanotrophs catalyzes the NADH-dependent hydroxylation of methane to methanol. This multicomponent enzyme mediates electron transfer via a hydroxylase (MMOH), a coupling protein, and a reductase which is comprised of an N-terminal [2Fe-2S] ferredoxin domain, an FAD binding subdomain, and an NADH binding subdomain. Oxygenases oxidize hydrocarbons using dioxygen as the oxidant. Dioxygenases add both atom of oxygen to the substrate, while mono-oxygenases add one atom to the substrate and one atom to water.
Probab=99.09 E-value=2.5e-10 Score=114.69 Aligned_cols=84 Identities=23% Similarity=0.326 Sum_probs=67.8
Q ss_pred CCcccccCCCCCCCCCeEEEEEEEEEeeCCCCCcccCcchHHhhc-cCCCCCCCCCceEEEEEeCCCccCCCCCCCcEEE
Q 007567 491 QPRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLCSTWMKN-SLPMEKSNDCSWAPIFVRQSNFKLPADAKVPIIM 569 (598)
Q Consensus 491 ~pR~YSIsSsp~~~~~~i~itv~~v~~~~~~g~~~~G~~S~~L~~-~~~~~~~~~~~~~~i~v~~s~F~lp~~~~~PiIm 569 (598)
..|.|||+|+|.. .+.+.|+|+.+ ..|.+|+||.+ +.+++ .+.|..+.|+|.++.+...++||
T Consensus 50 ~~R~ySi~s~~~~-~~~l~~~i~~~---------~~G~~s~~l~~~~~~Gd------~v~i~gP~G~f~l~~~~~~~~vl 113 (236)
T cd06210 50 TRRSYSLANTPNW-DGRLEFLIRLL---------PGGAFSTYLETRAKVGQ------RLNLRGPLGAFGLRENGLRPRWF 113 (236)
T ss_pred cceecccCCCCCC-CCEEEEEEEEc---------CCCccchhhhhCcCCCC------EEEEecCcceeeecCCCCccEEE
Confidence 4799999999864 36788888754 35899999997 66653 56666667899987665689999
Q ss_pred EeCCCChHhHHHHHHHHhhcc
Q 007567 570 IGPGTGLAPFRGSWSRTGTLS 590 (598)
Q Consensus 570 Ig~GTGiAPfr~flqer~~~~ 590 (598)
||+|||||||++++++....+
T Consensus 114 iagGtGiaP~~~~l~~~~~~~ 134 (236)
T cd06210 114 VAGGTGLAPLLSMLRRMAEWG 134 (236)
T ss_pred EccCcchhHHHHHHHHHHhcC
Confidence 999999999999999987543
No 54
>cd06211 phenol_2-monooxygenase_like Phenol 2-monooxygenase (phenol hydroxylase) is a flavoprotein monooxygenase, able to use molecular oxygen as a substrate in the microbial degredation of phenol. This protein is encoded by a single gene and uses a tightly bound FAD cofactor in the NAD(P)H dependent conversion of phenol and O2 to catechol and H2O. This group is related to the NAD binding ferredoxin reductases.
Probab=99.09 E-value=2.3e-10 Score=115.48 Aligned_cols=84 Identities=25% Similarity=0.292 Sum_probs=67.3
Q ss_pred CCcccccCCCCCCCCCeEEEEEEEEEeeCCCCCcccCcchHHhh-ccCCCCCCCCCceEEEEEeCCCccCCCCCCCcEEE
Q 007567 491 QPRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLCSTWMK-NSLPMEKSNDCSWAPIFVRQSNFKLPADAKVPIIM 569 (598)
Q Consensus 491 ~pR~YSIsSsp~~~~~~i~itv~~v~~~~~~g~~~~G~~S~~L~-~~~~~~~~~~~~~~~i~v~~s~F~lp~~~~~PiIm 569 (598)
..|.|||+|.|.. .+.++|+|+++ ..|.+|+||. ++.+++ .+.|..+.|+|.++.+...|+||
T Consensus 51 ~~r~ySi~s~~~~-~~~l~l~i~~~---------~~G~~s~~l~~~l~~G~------~v~i~gP~G~~~~~~~~~~~~v~ 114 (238)
T cd06211 51 GTRAFSIASSPSD-AGEIELHIRLV---------PGGIATTYVHKQLKEGD------ELEISGPYGDFFVRDSDQRPIIF 114 (238)
T ss_pred CccccccCCCCCC-CCEEEEEEEEC---------CCCcchhhHhhcCCCCC------EEEEECCccceEecCCCCCCEEE
Confidence 5799999999864 36899988765 3689999997 465543 45566567899887666689999
Q ss_pred EeCCCChHhHHHHHHHHhhcc
Q 007567 570 IGPGTGLAPFRGSWSRTGTLS 590 (598)
Q Consensus 570 Ig~GTGiAPfr~flqer~~~~ 590 (598)
||+|||||||++++++....+
T Consensus 115 iagG~GiaP~~~~l~~~~~~~ 135 (238)
T cd06211 115 IAGGSGLSSPRSMILDLLERG 135 (238)
T ss_pred EeCCcCHHHHHHHHHHHHhcC
Confidence 999999999999999887543
No 55
>cd06190 T4MO_e_transfer_like Toluene-4-monoxygenase electron transfer component of Pseudomonas mendocina hydroxylates toluene and forms p-cresol as part of a three component toluene-4-monoxygenase system. Electron transfer is from NADH to an NADH:ferredoxin oxidoreductase (TmoF in P. mendocina) to ferredoxin to an iron-containing oxygenase. TmoF is homologous to other mono- and dioxygenase systems within the ferredoxin reductase family.
Probab=99.09 E-value=2.2e-10 Score=114.88 Aligned_cols=94 Identities=18% Similarity=0.175 Sum_probs=71.3
Q ss_pred hhhHhhhcCCC-CCcccccCCCCCCCCCeEEEEEEEEEeeCCCCCcccCcchHHhhcc-CCCCCCCCCceEEEEEeCCCc
Q 007567 480 GVFFAAIVPRL-QPRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLCSTWMKNS-LPMEKSNDCSWAPIFVRQSNF 557 (598)
Q Consensus 480 ~~ll~~i~p~l-~pR~YSIsSsp~~~~~~i~itv~~v~~~~~~g~~~~G~~S~~L~~~-~~~~~~~~~~~~~i~v~~s~F 557 (598)
++++..-+|.. .+|.|||+|.|.. .+.++|+|+.+ ..|.+|.||.+. .++ +.+.|..+.+.|
T Consensus 27 GQ~v~l~~~~~~~~r~ySi~s~~~~-~~~~~~~vk~~---------~~G~~s~~l~~~~~~g------~~v~v~gP~G~~ 90 (232)
T cd06190 27 GQYALLALPGVEGARAYSMANLANA-SGEWEFIIKRK---------PGGAASNALFDNLEPG------DELELDGPYGLA 90 (232)
T ss_pred CCEEEEECCCCCcccCccCCcCCCC-CCEEEEEEEEc---------CCCcchHHHhhcCCCC------CEEEEECCcccc
Confidence 44443223555 6799999999865 47899988754 358999999874 554 355666667888
Q ss_pred cCCCCCCCcEEEEeCCCChHhHHHHHHHHhhc
Q 007567 558 KLPADAKVPIIMIGPGTGLAPFRGSWSRTGTL 589 (598)
Q Consensus 558 ~lp~~~~~PiImIg~GTGiAPfr~flqer~~~ 589 (598)
.++.+...|+||||+|||||||++++++....
T Consensus 91 ~~~~~~~~~illIagG~GiaP~~~~l~~~~~~ 122 (232)
T cd06190 91 YLRPDEDRDIVCIAGGSGLAPMLSILRGAARS 122 (232)
T ss_pred eecCCCCCcEEEEeeCcCHHHHHHHHHHHHhc
Confidence 87766568999999999999999999998764
No 56
>TIGR01755 flav_wrbA NAD(P)H:quinone oxidoreductase, type IV. This model represents a protein, WrbA, related to and slightly larger than flavodoxin. It was just shown, in E. coli and Archaeoglobus fulgidus (and previously for some eukaryotic homologs) to act as fourth type of NAD(P)H:quinone oxidoreductase. In E. coli, this protein was earlier reported to be produced during stationary phase, bind to the trp repressor, and make trp operon repression more efficient. WrbA does not interact with the trp operator by itself. Members are found in species in which homologs of the E. coli trp operon repressor TrpR are not detected.
Probab=99.09 E-value=1.7e-09 Score=106.49 Aligned_cols=126 Identities=19% Similarity=0.100 Sum_probs=95.7
Q ss_pred eEEEEEeCCCchHHHHHHHHHHHHHhhcCCceeEEEcCCCCCCcchH------------H--HHhhccCCeEEEEEecCC
Q 007567 106 KVTIFFGTQTGTAEGFAKALADEARARYDKAIFKVVDIDDYADEEDE------------Y--EEKLKKENIVFFFLATYG 171 (598)
Q Consensus 106 ~v~I~YgSqTGtae~~A~~la~~l~~~~~~~~~~v~dl~~~~~~~~~------------~--~~~l~~~~~vIf~~sTyG 171 (598)
+|+|+|+|++|||+++|+.+++.+++.. +..++++++.+...++.. + .+++.+++.+||++|||
T Consensus 2 kilIiY~S~~G~T~~lA~~ia~g~~~~~-g~ev~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aD~ii~GSPty- 79 (197)
T TIGR01755 2 KVLVLYYSMYGHIETMARAVAEGAREVD-GAEVVVKRVPETVPEEVAEKSHGKTDQTAPVATPQELADYDAIIFGTPTR- 79 (197)
T ss_pred eEEEEEeCCCCHHHHHHHHHHHHHHhcC-CCEEEEEeccccCcHHHHHhccCCcccCCccCCHHHHHHCCEEEEEeccc-
Confidence 6999999999999999999999997652 256788888654321100 0 14577889999999999
Q ss_pred CCCcchHHHHHHHHHHhhcCCCcccCCceEEEEeecCCcchhHhHHHHHHHHHHHhcCCeEee
Q 007567 172 DGEPTDNAARFYKWFTEQKEGGEWLQKLKYGVFGLGNRQYEHFNKIAKVVDEILANQGAKRLV 234 (598)
Q Consensus 172 ~Geppdna~~F~~~L~~~~~~~~~l~~~~yaVFGLGds~Y~~Fn~~~k~ld~~L~~lGA~ri~ 234 (598)
.|.++..++.|++++..... ...+.++..++|+.+...+.-...+...+...|..+|..-+.
T Consensus 80 ~g~~~~~lk~fld~~~~~~~-~~~l~gK~~~~f~s~g~~~Gg~~~~l~~l~~~l~~~Gm~vv~ 141 (197)
T TIGR01755 80 FGNMASQMRNFLDQTGGLWA-SGALVGKVGSVFTSTGTQHGGQESTILSTWTTLLHHGMIIVP 141 (197)
T ss_pred ccCccHHHHHHHHhcccccc-ccccCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHCCCEEeC
Confidence 89999999999999875421 235889999999976555555656667777788899987653
No 57
>cd06191 FNR_iron_sulfur_binding Iron-sulfur binding Ferredoxin Reductase (FNR) proteins combine the FAD and NAD(P) binding regions of FNR with a C-terminal iron-sulfur binding cluster domain. FNR was intially identified as a chloroplast reductase activity catalyzing the electron transfer from reduced iron-sulfur protein ferredoxin to NADP+ as the final step in the electron transport mechanism of photosystem I. FNR transfers electrons from reduced ferredoxin to FAD (forming FADH2 via a semiquinone intermediate) and then transfers a hydride ion to convert NADP+ to NADPH. FNR has since been shown to utilize a variety of electron acceptors and donors and has a variety of physiological functions including nitrogen assimilation, dinitrogen fixation, steroid hydroxylation, fatty acid metabolism, oxygenase activity, and methnae assimilation in a variety of organisms. FNR has an NAD(P)-binding sub-domain of the alpha/beta class and a discrete (usually N-terminal) flavin sub-domain which vary in
Probab=99.09 E-value=2.6e-10 Score=114.30 Aligned_cols=82 Identities=23% Similarity=0.367 Sum_probs=66.9
Q ss_pred CCcccccCCCCCCCCCeEEEEEEEEEeeCCCCCcccCcchHHhh-ccCCCCCCCCCceEEEEEeCCCccCCCCCCCcEEE
Q 007567 491 QPRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLCSTWMK-NSLPMEKSNDCSWAPIFVRQSNFKLPADAKVPIIM 569 (598)
Q Consensus 491 ~pR~YSIsSsp~~~~~~i~itv~~v~~~~~~g~~~~G~~S~~L~-~~~~~~~~~~~~~~~i~v~~s~F~lp~~~~~PiIm 569 (598)
.+|.|||+|.|. .++++|+|+.+ ..|.+|+||. ++.+++ .+.|..+.|+|.++.+...++||
T Consensus 45 ~~r~ySi~s~~~--~~~l~~~v~~~---------~~G~~s~~l~~~~~~Gd------~v~i~gP~G~f~l~~~~~~~~ll 107 (231)
T cd06191 45 LRRCYSLCSSPA--PDEISITVKRV---------PGGRVSNYLREHIQPGM------TVEVMGPQGHFVYQPQPPGRYLL 107 (231)
T ss_pred EeeeeeccCCCC--CCeEEEEEEEC---------CCCccchHHHhcCCCCC------EEEEeCCccceEeCCCCCCcEEE
Confidence 469999999986 47899988765 2589999998 466653 56666677999987666689999
Q ss_pred EeCCCChHhHHHHHHHHhhc
Q 007567 570 IGPGTGLAPFRGSWSRTGTL 589 (598)
Q Consensus 570 Ig~GTGiAPfr~flqer~~~ 589 (598)
||+|||||||++++++....
T Consensus 108 iagG~Gitp~~s~~~~~~~~ 127 (231)
T cd06191 108 VAAGSGITPLMAMIRATLQT 127 (231)
T ss_pred EecCccHhHHHHHHHHHHhc
Confidence 99999999999999987654
No 58
>PRK10684 HCP oxidoreductase, NADH-dependent; Provisional
Probab=99.08 E-value=2.3e-10 Score=121.40 Aligned_cols=82 Identities=20% Similarity=0.308 Sum_probs=65.9
Q ss_pred CcccccCCCCCCCCCeEEEEEEEEEeeCCCCCcccCcchHHhh-ccCCCCCCCCCceEEEEEeCCCccCCCCCCCcEEEE
Q 007567 492 PRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLCSTWMK-NSLPMEKSNDCSWAPIFVRQSNFKLPADAKVPIIMI 570 (598)
Q Consensus 492 pR~YSIsSsp~~~~~~i~itv~~v~~~~~~g~~~~G~~S~~L~-~~~~~~~~~~~~~~~i~v~~s~F~lp~~~~~PiImI 570 (598)
.|.|||+|+|.. .+.++|+|+.+ ..|.+|+||. ++.+++ .+.|.-+.|+|.++.+...|+|||
T Consensus 54 ~R~ySias~p~~-~~~l~i~Vk~~---------~~G~~S~~L~~~l~~Gd------~v~v~gP~G~f~l~~~~~~~~vli 117 (332)
T PRK10684 54 LRAYTLSSTPGV-SEFITLTVRRI---------DDGVGSQWLTRDVKRGD------YLWLSDAMGEFTCDDKAEDKYLLL 117 (332)
T ss_pred eeeecccCCCCC-CCcEEEEEEEc---------CCCcchhHHHhcCCCCC------EEEEeCCccccccCCCCCCcEEEE
Confidence 489999999864 36799999865 3689999997 566653 455555678999987667899999
Q ss_pred eCCCChHhHHHHHHHHhhc
Q 007567 571 GPGTGLAPFRGSWSRTGTL 589 (598)
Q Consensus 571 g~GTGiAPfr~flqer~~~ 589 (598)
|+|||||||++++++....
T Consensus 118 AgG~GItP~~sml~~~~~~ 136 (332)
T PRK10684 118 AAGCGVTPIMSMRRWLLKN 136 (332)
T ss_pred ecCcCcchHHHHHHHHHhc
Confidence 9999999999999987654
No 59
>cd06187 O2ase_reductase_like The oxygenase reductase FAD/NADH binding domain acts as part of the multi-component bacterial oxygenases which oxidize hydrocarbons using oxygen as the oxidant. Electron transfer is from NADH via FAD (in the oxygenase reductase) and an [2FE-2S] ferredoxin center (fused to the FAD/NADH domain and/or discrete) to the oxygenase. Dioxygenases add both atoms of oxygen to the substrate, while mono-oxygenases (aka mixed oxygenases) add one atom to the substrate and one atom to water. In dioxygenases, Class I enzymes are 2 component, containing a reductase with Rieske type [2Fe-2S] redox centers and an oxygenase. Class II are 3 component, having discrete flavin and ferredoxin proteins and an oxygenase. Class III have 2 [2Fe-2S] centers, one fused to the flavin domain and the other separate.
Probab=99.08 E-value=2.6e-10 Score=113.47 Aligned_cols=84 Identities=24% Similarity=0.255 Sum_probs=68.1
Q ss_pred CCcccccCCCCCCCCCeEEEEEEEEEeeCCCCCcccCcchHHhhc-cCCCCCCCCCceEEEEEeCCCccCCCCCCCcEEE
Q 007567 491 QPRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLCSTWMKN-SLPMEKSNDCSWAPIFVRQSNFKLPADAKVPIIM 569 (598)
Q Consensus 491 ~pR~YSIsSsp~~~~~~i~itv~~v~~~~~~g~~~~G~~S~~L~~-~~~~~~~~~~~~~~i~v~~s~F~lp~~~~~PiIm 569 (598)
..|.|||+|.|.. .+.++|+|+.+ ..|.+|+||.+ +.+++ .+.|..+.+.|.++.+...++||
T Consensus 40 ~~r~ysi~s~~~~-~~~~~~~i~~~---------~~G~~s~~l~~~l~~G~------~v~i~gP~G~~~~~~~~~~~~ll 103 (224)
T cd06187 40 TWRAYSPANPPNE-DGEIEFHVRAV---------PGGRVSNALHDELKVGD------RVRLSGPYGTFYLRRDHDRPVLC 103 (224)
T ss_pred cceeccccCCCCC-CCEEEEEEEeC---------CCCcchHHHhhcCccCC------EEEEeCCccceEecCCCCCCEEE
Confidence 4799999999865 46799888754 26999999998 66653 56666677899887665689999
Q ss_pred EeCCCChHhHHHHHHHHhhcc
Q 007567 570 IGPGTGLAPFRGSWSRTGTLS 590 (598)
Q Consensus 570 Ig~GTGiAPfr~flqer~~~~ 590 (598)
||+|||||||++++++....+
T Consensus 104 iagG~GI~p~~sll~~~~~~~ 124 (224)
T cd06187 104 IAGGTGLAPLRAIVEDALRRG 124 (224)
T ss_pred EecCcCHHHHHHHHHHHHhcC
Confidence 999999999999999987643
No 60
>PRK03767 NAD(P)H:quinone oxidoreductase; Provisional
Probab=99.08 E-value=2.4e-09 Score=105.65 Aligned_cols=127 Identities=18% Similarity=0.111 Sum_probs=94.9
Q ss_pred CceEEEEEeCCCchHHHHHHHHHHHHHh-hcCCceeEEEcCCCCCCcchH--------------HHHhhccCCeEEEEEe
Q 007567 104 KQKVTIFFGTQTGTAEGFAKALADEARA-RYDKAIFKVVDIDDYADEEDE--------------YEEKLKKENIVFFFLA 168 (598)
Q Consensus 104 ~~~v~I~YgSqTGtae~~A~~la~~l~~-~~~~~~~~v~dl~~~~~~~~~--------------~~~~l~~~~~vIf~~s 168 (598)
|++|+|+|+|.+|||+++|+.+++.+.+ .+ ..++++++.+..+++.. -.+++...+.+||++|
T Consensus 1 M~kilIvy~S~~G~T~~lA~~ia~g~~~~~G--~ev~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aD~ii~gsP 78 (200)
T PRK03767 1 MAKVLVLYYSMYGHIETMAEAVAEGAREVAG--AEVTIKRVPETVPEEVAKKAGGKTDQAAPVATPDELADYDAIIFGTP 78 (200)
T ss_pred CCeEEEEEcCCCCHHHHHHHHHHHHHhhcCC--cEEEEEeccccCCHHHHHhcCCCcccCCCccCHHHHHhCCEEEEEec
Confidence 3589999999999999999999999986 54 56788888643221100 0356788999999999
Q ss_pred cCCCCCcchHHHHHHHHHHhhcCCCcccCCceEEEEeecCCcchhHhHHHHHHHHHHHhcCCeEee
Q 007567 169 TYGDGEPTDNAARFYKWFTEQKEGGEWLQKLKYGVFGLGNRQYEHFNKIAKVVDEILANQGAKRLV 234 (598)
Q Consensus 169 TyG~Geppdna~~F~~~L~~~~~~~~~l~~~~yaVFGLGds~Y~~Fn~~~k~ld~~L~~lGA~ri~ 234 (598)
|| .|.+|..++.|++++..... ...+.++.+++|+.......---...+.+...|..+|+.-+-
T Consensus 79 ty-~g~~~~~lk~fld~~~~~~~-~~~l~gK~~~~f~s~g~~~Gg~~~~l~~l~~~~~~~gm~vv~ 142 (200)
T PRK03767 79 TR-FGNMAGQMRNFLDQTGGLWA-KGALVGKVGSVFTSTGTQHGGQETTITSTHTTLLHHGMVIVG 142 (200)
T ss_pred cc-CCCchHHHHHHHHHhccccc-cCCccCCEEEEEEeCCCCCCChHHHHHHHHHHHHHcCCEEeC
Confidence 99 99999999999999865321 235889999999975443333334456666777888987653
No 61
>cd06209 BenDO_FAD_NAD Benzoate dioxygenase reductase (BenDO) FAD/NAD binding domain. Oxygenases oxidize hydrocarbons using dioxygen as the oxidant. As a Class I bacterial dioxygenases, benzoate dioxygenase like proteins combine an [2Fe-2S] cluster containing N-terminal ferredoxin at the end fused to an FAD/NADP(P) domain. In dioxygenase FAD/NAD(P) binding domain, the reductase transfers 2 electrons from NAD(P)H to the oxygenase which insert into an aromatic substrate, an initial step in microbial aerobic degradation of aromatic rings. Flavin oxidoreductases use flavins as substrates, unlike flavoenzymes which have a flavin prosthetic group.
Probab=99.08 E-value=3.3e-10 Score=113.36 Aligned_cols=81 Identities=28% Similarity=0.429 Sum_probs=64.8
Q ss_pred CcccccCCCCCCCCCeEEEEEEEEEeeCCCCCcccCcchHHhhc-cCCCCCCCCCceEEEEEeCCCccCCCCCCCcEEEE
Q 007567 492 PRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLCSTWMKN-SLPMEKSNDCSWAPIFVRQSNFKLPADAKVPIIMI 570 (598)
Q Consensus 492 pR~YSIsSsp~~~~~~i~itv~~v~~~~~~g~~~~G~~S~~L~~-~~~~~~~~~~~~~~i~v~~s~F~lp~~~~~PiImI 570 (598)
.|.|||+|.|.. +.++|+|+.+ ..|.+|+||.+ +.+++ .+.|..+.|.|.++.. ..|+|||
T Consensus 47 ~r~ysi~s~~~~--~~i~~~i~~~---------~~G~~s~~l~~~l~~G~------~v~v~gP~G~~~~~~~-~~~~vli 108 (228)
T cd06209 47 TRSYSFSSAPGD--PRLEFLIRLL---------PGGAMSSYLRDRAQPGD------RLTLTGPLGSFYLREV-KRPLLML 108 (228)
T ss_pred ccccccccCCCC--CeEEEEEEEc---------CCCcchhhHHhccCCCC------EEEEECCcccceecCC-CCeEEEE
Confidence 699999998865 6899988764 36999999998 65543 4556555688887644 4899999
Q ss_pred eCCCChHhHHHHHHHHhhcc
Q 007567 571 GPGTGLAPFRGSWSRTGTLS 590 (598)
Q Consensus 571 g~GTGiAPfr~flqer~~~~ 590 (598)
|+|||||||+++|++.....
T Consensus 109 a~GtGIaP~~~ll~~~~~~~ 128 (228)
T cd06209 109 AGGTGLAPFLSMLDVLAEDG 128 (228)
T ss_pred EcccCHhHHHHHHHHHHhcC
Confidence 99999999999999987544
No 62
>PRK05713 hypothetical protein; Provisional
Probab=99.08 E-value=2.3e-10 Score=120.44 Aligned_cols=87 Identities=17% Similarity=0.192 Sum_probs=65.8
Q ss_pred CCCCCcccccCCCCCCCCCeEEEEEEEEEeeCCCCCcccCcchHHhhccCCCCCCCCCceEEEEEeCC-CccCCCC-CCC
Q 007567 488 PRLQPRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLCSTWMKNSLPMEKSNDCSWAPIFVRQS-NFKLPAD-AKV 565 (598)
Q Consensus 488 p~l~pR~YSIsSsp~~~~~~i~itv~~v~~~~~~g~~~~G~~S~~L~~~~~~~~~~~~~~~~i~v~~s-~F~lp~~-~~~ 565 (598)
+....|.|||+|+|.. .+.++|+|+.+ ..|..|+||.++.+++ .+.+.-+.+ .|.++.+ ..+
T Consensus 130 ~~~~~R~ySias~p~~-~~~l~~~I~~~---------~~G~~s~~l~~l~~Gd------~v~l~~p~gg~~~~~~~~~~~ 193 (312)
T PRK05713 130 AGGVARPYSLASLPGE-DPFLEFHIDCS---------RPGAFCDAARQLQVGD------LLRLGELRGGALHYDPDWQER 193 (312)
T ss_pred CCCcccccccCcCCCC-CCeEEEEEEEc---------CCCccchhhhcCCCCC------EEEEccCCCCceEecCCCCCC
Confidence 3345799999999864 46899988764 3699999998877654 444433444 5667654 468
Q ss_pred cEEEEeCCCChHhHHHHHHHHhhcc
Q 007567 566 PIIMIGPGTGLAPFRGSWSRTGTLS 590 (598)
Q Consensus 566 PiImIg~GTGiAPfr~flqer~~~~ 590 (598)
|+||||+|||||||+|++++....+
T Consensus 194 ~~vlIAgGtGiaP~~s~l~~~~~~~ 218 (312)
T PRK05713 194 PLWLLAAGTGLAPLWGILREALRQG 218 (312)
T ss_pred cEEEEecCcChhHHHHHHHHHHhcC
Confidence 9999999999999999999876543
No 63
>cd06184 flavohem_like_fad_nad_binding FAD_NAD(P)H binding domain of flavohemoglobin. Flavohemoglobins have a globin domain containing a B-type heme fused with a ferredoxin reductase-like FAD/NAD-binding domain. Flavohemoglobins detoxify nitric oxide (NO) via an NO dioxygenase reaction. The hemoglobin domain adopts a globin fold with an embedded heme molecule. Flavohemoglobins also have a C-terminal reductase domain with bindiing sites for FAD and NAD(P)H. This domain catalyzes the conversion of NO + O2 + NAD(P)H to NO3- + NAD(P)+. Instead of the oxygen transport function of hemoglobins, flavohemoglobins seem to act in NO dioxygenation and NO signalling.
Probab=99.07 E-value=2.9e-10 Score=115.20 Aligned_cols=82 Identities=20% Similarity=0.339 Sum_probs=66.0
Q ss_pred CCcccccCCCCCCCCCeEEEEEEEEEeeCCCCCcccCcchHHhhc-cCCCCCCCCCceEEEEEeCCCccCCCCCCCcEEE
Q 007567 491 QPRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLCSTWMKN-SLPMEKSNDCSWAPIFVRQSNFKLPADAKVPIIM 569 (598)
Q Consensus 491 ~pR~YSIsSsp~~~~~~i~itv~~v~~~~~~g~~~~G~~S~~L~~-~~~~~~~~~~~~~~i~v~~s~F~lp~~~~~PiIm 569 (598)
..|.|||+|.|.. +.++|+|+.+ ..|.+|+||.+ +.+++ .+.|..+.+.|.++.+...++||
T Consensus 56 ~~R~ySi~s~~~~--~~l~~~ik~~---------~~G~~s~~l~~~~~~Gd------~v~i~gP~G~~~~~~~~~~~lll 118 (247)
T cd06184 56 QIRQYSLSDAPNG--DYYRISVKRE---------PGGLVSNYLHDNVKVGD------VLEVSAPAGDFVLDEASDRPLVL 118 (247)
T ss_pred eeEEeEeccCCCC--CeEEEEEEEc---------CCCcchHHHHhcCCCCC------EEEEEcCCCceECCCCCCCcEEE
Confidence 3589999999854 4788877643 25999999998 76653 55666667899998756689999
Q ss_pred EeCCCChHhHHHHHHHHhhc
Q 007567 570 IGPGTGLAPFRGSWSRTGTL 589 (598)
Q Consensus 570 Ig~GTGiAPfr~flqer~~~ 589 (598)
||+|||||||++++++....
T Consensus 119 iagGtGiaP~~~~l~~~~~~ 138 (247)
T cd06184 119 ISAGVGITPMLSMLEALAAE 138 (247)
T ss_pred EeccccHhHHHHHHHHHHhc
Confidence 99999999999999998763
No 64
>cd06212 monooxygenase_like The oxygenase reductase FAD/NADH binding domain acts as part of the multi-component bacterial oxygenases which oxidize hydrocarbons. These flavoprotein monooxygenases use molecular oxygen as a substrate and require reduced FAD. One atom of oxygen is incorportated into the aromatic compond, while the other is used to form a molecule of water. In contrast dioxygenases add both atoms of oxygen to the substrate.
Probab=99.07 E-value=4.1e-10 Score=112.96 Aligned_cols=84 Identities=20% Similarity=0.345 Sum_probs=68.2
Q ss_pred CCcccccCCCCCCCCCeEEEEEEEEEeeCCCCCcccCcchHHhhc-cCCCCCCCCCceEEEEEeCCCccCCCCCCCcEEE
Q 007567 491 QPRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLCSTWMKN-SLPMEKSNDCSWAPIFVRQSNFKLPADAKVPIIM 569 (598)
Q Consensus 491 ~pR~YSIsSsp~~~~~~i~itv~~v~~~~~~g~~~~G~~S~~L~~-~~~~~~~~~~~~~~i~v~~s~F~lp~~~~~PiIm 569 (598)
..|.|||+|+|.. .+.++|+|+.+ ..|.+|+||.+ +.++ +.+.|..+.+.|.++.+...++||
T Consensus 45 ~~r~ySi~s~~~~-~~~l~l~vk~~---------~~G~~s~~l~~~l~~G------~~v~i~gP~G~~~~~~~~~~~~l~ 108 (232)
T cd06212 45 ETRSFSMANTPAD-PGRLEFIIKKY---------PGGLFSSFLDDGLAVG------DPVTVTGPYGTCTLRESRDRPIVL 108 (232)
T ss_pred cccccccCCCCCC-CCEEEEEEEEC---------CCCchhhHHhhcCCCC------CEEEEEcCcccceecCCCCCcEEE
Confidence 5699999999865 36899988764 36899999987 6554 356666677999987666789999
Q ss_pred EeCCCChHhHHHHHHHHhhcc
Q 007567 570 IGPGTGLAPFRGSWSRTGTLS 590 (598)
Q Consensus 570 Ig~GTGiAPfr~flqer~~~~ 590 (598)
||+|||||||++++++....+
T Consensus 109 iagG~Giap~~~~l~~~~~~~ 129 (232)
T cd06212 109 IGGGSGMAPLLSLLRDMAASG 129 (232)
T ss_pred EecCcchhHHHHHHHHHHhcC
Confidence 999999999999999987653
No 65
>cd06194 FNR_N-term_Iron_sulfur_binding Iron-sulfur binding ferredoxin reductase (FNR) proteins combine the FAD and NAD(P) binding regions of FNR with an N-terminal Iron-Sulfur binding cluster domain. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap betweed the two domains. Ferredoxin-NADP+ reductase first accepts one electron from reduced ferredoxin to form a flavin semiquinone intermediate. The enzyme then accepts a second e
Probab=99.06 E-value=4.1e-10 Score=112.15 Aligned_cols=95 Identities=20% Similarity=0.233 Sum_probs=70.9
Q ss_pred hhhHhhhcCCCCCcccccCCCCCCCCCeEEEEEEEEEeeCCCCCcccCcchHHhhcc-CCCCCCCCCceEEEEEeCCCcc
Q 007567 480 GVFFAAIVPRLQPRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLCSTWMKNS-LPMEKSNDCSWAPIFVRQSNFK 558 (598)
Q Consensus 480 ~~ll~~i~p~l~pR~YSIsSsp~~~~~~i~itv~~v~~~~~~g~~~~G~~S~~L~~~-~~~~~~~~~~~~~i~v~~s~F~ 558 (598)
++++..-+|....|.|||+|+|... +.++|+|+.+ ..|.+|+||.+. .++ +.+.|..+.|.|.
T Consensus 27 GQ~v~l~~~~~~~r~ySi~s~~~~~-~~~~~~i~~~---------~~G~~s~~l~~~~~~G------~~v~i~gP~G~~~ 90 (222)
T cd06194 27 GQYVNLRRAGGLARSYSPTSLPDGD-NELEFHIRRK---------PNGAFSGWLGEEARPG------HALRLQGPFGQAF 90 (222)
T ss_pred CCEEEEEcCCCCceeeecCCCCCCC-CEEEEEEEec---------cCCccchHHHhccCCC------CEEEEecCcCCee
Confidence 4454322355567999999998753 6788888654 359999999984 554 3566666678877
Q ss_pred CCC-CCCCcEEEEeCCCChHhHHHHHHHHhhcc
Q 007567 559 LPA-DAKVPIIMIGPGTGLAPFRGSWSRTGTLS 590 (598)
Q Consensus 559 lp~-~~~~PiImIg~GTGiAPfr~flqer~~~~ 590 (598)
+.. ....|+||||+|||||||++++++....+
T Consensus 91 ~~~~~~~~~~v~iagG~Giap~~~~l~~~~~~~ 123 (222)
T cd06194 91 YRPEYGEGPLLLVGAGTGLAPLWGIARAALRQG 123 (222)
T ss_pred ccCCCCCCCEEEEecCcchhhHHHHHHHHHhcC
Confidence 653 45689999999999999999999986543
No 66
>PRK11104 hemG protoporphyrinogen oxidase; Provisional
Probab=99.04 E-value=8.7e-10 Score=106.83 Aligned_cols=87 Identities=17% Similarity=0.228 Sum_probs=74.0
Q ss_pred ceEEEEEeCCCchHHHHHHHHHHHHHhhcCCceeEEEcCCCCCCcchHHHHhhccCCeEEEEEecCCCCCcchHHHHHHH
Q 007567 105 QKVTIFFGTQTGTAEGFAKALADEARARYDKAIFKVVDIDDYADEEDEYEEKLKKENIVFFFLATYGDGEPTDNAARFYK 184 (598)
Q Consensus 105 ~~v~I~YgSqTGtae~~A~~la~~l~~~~~~~~~~v~dl~~~~~~~~~~~~~l~~~~~vIf~~sTyG~Geppdna~~F~~ 184 (598)
++++|+|+|.||||+++|+.|++.+.. + ..+.++++++... .++.+++.+||++||| .|.++..+..|++
T Consensus 1 MkilIvY~S~~G~T~~iA~~Ia~~l~~-g--~~v~~~~~~~~~~------~~l~~yD~vIlGspi~-~G~~~~~~~~fl~ 70 (177)
T PRK11104 1 MKTLILYSSRDGQTRKIASYIASELKE-G--IQCDVVNLHRIEE------PDLSDYDRVVIGASIR-YGHFHSALYKFVK 70 (177)
T ss_pred CcEEEEEECCCChHHHHHHHHHHHhCC-C--CeEEEEEhhhcCc------cCHHHCCEEEEECccc-cCCcCHHHHHHHH
Confidence 478999999999999999999999975 4 4567888887653 2477899999999999 8999999999987
Q ss_pred HHHhhcCCCcccCCceEEEEeec
Q 007567 185 WFTEQKEGGEWLQKLKYGVFGLG 207 (598)
Q Consensus 185 ~L~~~~~~~~~l~~~~yaVFGLG 207 (598)
.+.. .|+++++++|++|
T Consensus 71 ~~~~------~l~~K~v~~F~v~ 87 (177)
T PRK11104 71 KHAT------QLNQMPSAFFSVN 87 (177)
T ss_pred HHHH------HhCCCeEEEEEec
Confidence 6543 5889999999998
No 67
>cd06197 FNR_like_2 FAD/NAD(P) binding domain of ferredoxin reductase-like proteins. Ferredoxin reductase (FNR) was intially identified as a chloroplast reductase activity, catalyzing the electron transfer from reduced iron-sulfur protein ferredoxin to NADP+ as the final step in the electron transport mechanism of photosystem I. FNR transfers electrons from reduced ferredoxin to FAD (forming FADH2 via a semiquinone intermediate) and then transfers a hydride ion to convert NADP+ to NADPH. FNR has since been shown to utilize a variety of electron acceptors and donors and have a variety of physiological functions in a variety of organisms including nitrogen assimilation, dinitrogen fixation, steroid hydroxylation, fatty acid metabolism, oxygenase activity, and methane assimilation. FNR has an NAD(P)-binding sub-domain of the alpha/beta class and a discrete (usually N-terminal) flavin sub-domain which varies in orientation with respect to the NAD(P) binding domain. The N-terminal moeity
Probab=99.04 E-value=4.7e-10 Score=112.20 Aligned_cols=87 Identities=20% Similarity=0.303 Sum_probs=65.5
Q ss_pred CCcccccCCCCCCCC--CeEEEEEEEEEeeCCCCCcccCcchHHhhccCCCCCCCCCceEEEEEeCCCccCCC---CCCC
Q 007567 491 QPRYYSISSSPRVAP--SRIHVTCALVYEKTPTGRVHKGLCSTWMKNSLPMEKSNDCSWAPIFVRQSNFKLPA---DAKV 565 (598)
Q Consensus 491 ~pR~YSIsSsp~~~~--~~i~itv~~v~~~~~~g~~~~G~~S~~L~~~~~~~~~~~~~~~~i~v~~s~F~lp~---~~~~ 565 (598)
..|.|||||+|...+ ++++|+|+. .|.+|+||.+...... ..++.+.|..+.+.|.++. +...
T Consensus 59 ~~R~ySias~p~~~~~~~~l~l~vk~-----------~G~~T~~L~~~~~~~~-~~G~~v~v~gP~G~f~~~~~~~~~~~ 126 (220)
T cd06197 59 FVRTFTVSSAPPHDPATDEFEITVRK-----------KGPVTGFLFQVARRLR-EQGLEVPVLGVGGEFTLSLPGEGAER 126 (220)
T ss_pred ceeeEEeecCCccCCCCCEEEEEEEe-----------CCCCCHHHHHhhhccc-CCCceEEEEecCCcccCCcccccCCc
Confidence 449999999997642 688887753 3889999988654210 0124566666778999875 3457
Q ss_pred cEEEEeCCCChHhHHHHHHHHhhc
Q 007567 566 PIIMIGPGTGLAPFRGSWSRTGTL 589 (598)
Q Consensus 566 PiImIg~GTGiAPfr~flqer~~~ 589 (598)
++||||+|||||||++++++....
T Consensus 127 ~illIagG~GItP~~sil~~l~~~ 150 (220)
T cd06197 127 KMVWIAGGVGITPFLAMLRAILSS 150 (220)
T ss_pred eEEEEecccchhhHHHHHHHHHhc
Confidence 999999999999999999988753
No 68
>cd06213 oxygenase_e_transfer_subunit The oxygenase reductase FAD/NADH binding domain acts as part of the multi-component bacterial oxygenases which oxidize hydrocarbons. Electron transfer is from NADH via FAD (in the oxygenase reductase) and an [2FE-2S] ferredoxin center (fused to the FAD/NADH domain and/or discrete) to the oxygenase. Dioxygenases add both atoms of oxygen to the substrate while mono-oxygenases add one atom to the substrate and one atom to water. In dioxygenases, Class I enzymes are 2 component, containing a reductase with Rieske type [2Fe-2S] redox centers and an oxygenase. Class II are 3 component, having discrete flavin and ferredoxin proteins and an oxygenase. Class III have 2 [2Fe-2S] centers, one fused to the flavin domain and the other separate.
Probab=99.04 E-value=5.7e-10 Score=111.64 Aligned_cols=83 Identities=22% Similarity=0.334 Sum_probs=65.5
Q ss_pred CCcccccCCCCCCCCCeEEEEEEEEEeeCCCCCcccCcchHHhhc-cCCCCCCCCCceEEEEEeCCCccCCCCCCCcEEE
Q 007567 491 QPRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLCSTWMKN-SLPMEKSNDCSWAPIFVRQSNFKLPADAKVPIIM 569 (598)
Q Consensus 491 ~pR~YSIsSsp~~~~~~i~itv~~v~~~~~~g~~~~G~~S~~L~~-~~~~~~~~~~~~~~i~v~~s~F~lp~~~~~PiIm 569 (598)
..|.|||+|+|.. .+.++|+|+.+ ..|.+|+||.+ +.++ +.+.|..+.|.|.++. ...++||
T Consensus 43 ~~r~ysi~s~~~~-~~~l~~~vk~~---------~~G~~s~~l~~~l~~G------~~v~i~gP~G~~~~~~-~~~~~ll 105 (227)
T cd06213 43 AARSYSFANAPQG-DGQLSFHIRKV---------PGGAFSGWLFGADRTG------ERLTVRGPFGDFWLRP-GDAPILC 105 (227)
T ss_pred cccccccCCCCCC-CCEEEEEEEEC---------CCCcchHHHHhcCCCC------CEEEEeCCCcceEeCC-CCCcEEE
Confidence 4799999999864 47899988754 35889999965 5554 3566666678999874 3579999
Q ss_pred EeCCCChHhHHHHHHHHhhcc
Q 007567 570 IGPGTGLAPFRGSWSRTGTLS 590 (598)
Q Consensus 570 Ig~GTGiAPfr~flqer~~~~ 590 (598)
||+|||||||++++++....+
T Consensus 106 iagG~GiaP~~~~~~~~~~~~ 126 (227)
T cd06213 106 IAGGSGLAPILAILEQARAAG 126 (227)
T ss_pred EecccchhHHHHHHHHHHhcC
Confidence 999999999999999987543
No 69
>PTZ00274 cytochrome b5 reductase; Provisional
Probab=99.03 E-value=4.8e-10 Score=118.58 Aligned_cols=80 Identities=18% Similarity=0.245 Sum_probs=61.9
Q ss_pred CcccccCCCCCCCCCeEEEEEEEEEeeCCCCCcccCcchHHhhccCCCCCCCCCceEEEEEeCCCccC--CCCCCCcEEE
Q 007567 492 PRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLCSTWMKNSLPMEKSNDCSWAPIFVRQSNFKL--PADAKVPIIM 569 (598)
Q Consensus 492 pR~YSIsSsp~~~~~~i~itv~~v~~~~~~g~~~~G~~S~~L~~~~~~~~~~~~~~~~i~v~~s~F~l--p~~~~~PiIm 569 (598)
.|.|||+|+|.. .+.++|+|+++ ..|..|+||.++.+++ . |.++...|.+ ..+...|+||
T Consensus 103 ~R~YSiaS~p~~-~~~le~~IK~~---------~~G~~S~~L~~lk~Gd------~--v~v~GP~f~~~~~~~~~~~lvl 164 (325)
T PTZ00274 103 QRFYTPVTANHT-KGYFDIIVKRK---------KDGLMTNHLFGMHVGD------K--LLFRSVTFKIQYRPNRWKHVGM 164 (325)
T ss_pred EEeeecCCCCCC-CCeEEEEEEEc---------CCCcccHHHhcCCCCC------E--EEEeCCeeecccCCCCCceEEE
Confidence 599999999965 46899999875 3799999999877764 3 4455434444 3344479999
Q ss_pred EeCCCChHhHHHHHHHHhhc
Q 007567 570 IGPGTGLAPFRGSWSRTGTL 589 (598)
Q Consensus 570 Ig~GTGiAPfr~flqer~~~ 589 (598)
||+|||||||+++|++..+.
T Consensus 165 IAGGsGITP~lsmlr~~l~~ 184 (325)
T PTZ00274 165 IAGGTGFTPMLQIIRHSLTE 184 (325)
T ss_pred EeCCcchhHHHHHHHHHHhc
Confidence 99999999999999986553
No 70
>PRK07116 flavodoxin; Provisional
Probab=99.03 E-value=2.4e-09 Score=101.98 Aligned_cols=133 Identities=14% Similarity=0.201 Sum_probs=86.4
Q ss_pred CceEEEEEeCCCchHHHHHHHHHHHHHhhcCCceeEEEcCCCCCCcc--------------------h---HHHHhhccC
Q 007567 104 KQKVTIFFGTQTGTAEGFAKALADEARARYDKAIFKVVDIDDYADEE--------------------D---EYEEKLKKE 160 (598)
Q Consensus 104 ~~~v~I~YgSqTGtae~~A~~la~~l~~~~~~~~~~v~dl~~~~~~~--------------------~---~~~~~l~~~ 160 (598)
+++++|+|.|.||||+.+|+.|++.+.... .++.+...|...+ . ....++..+
T Consensus 2 m~k~lIvY~S~tGnT~~iA~~Ia~~l~~d~----~~i~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~l~~~ 77 (160)
T PRK07116 2 NNKTLVAYFSATGTTKKVAEKLAEVTGADL----FEIKPEQPYTAADLDWNDKKSRSSVEMADKSSRPAIAKKIENIAEY 77 (160)
T ss_pred CCcEEEEEECCCCcHHHHHHHHHHHhcCCe----EEEeeCCCCCcchhhhhHhhhhHHHHhhcccchHHHHHHHhhHHhC
Confidence 578999999999999999999999885321 2343333322110 0 012356788
Q ss_pred CeEEEEEecCCCCCcchHHHHHHHHHHhhcCCCcccCCceEEEEee-cCCcchhHhHHHHHHHHHHHhcCCeEeecceec
Q 007567 161 NIVFFFLATYGDGEPTDNAARFYKWFTEQKEGGEWLQKLKYGVFGL-GNRQYEHFNKIAKVVDEILANQGAKRLVPVGLG 239 (598)
Q Consensus 161 ~~vIf~~sTyG~Geppdna~~F~~~L~~~~~~~~~l~~~~yaVFGL-Gds~Y~~Fn~~~k~ld~~L~~lGA~ri~~~g~g 239 (598)
+.+||++|+| .|.+|.....|++.+ .++++++++|+. |.+.+ +.+...+.+.+.+.+.. +.-..
T Consensus 78 D~Iiig~Pv~-~~~~p~~v~~fl~~~--------~l~~k~v~~f~T~g~~~~---g~~~~~~~~~~~~~~~~---~~~~~ 142 (160)
T PRK07116 78 DVIFLGFPIW-WYVAPRIINTFLESY--------DFSGKTVIPFATSGGSGI---GNAEKELKKSYPDANWK---EGRLL 142 (160)
T ss_pred CEEEEECChh-ccccHHHHHHHHHhc--------CCCCCEEEEEEeCCCCCc---CcHHHHHHHHCCcCccc---cCeee
Confidence 9999999999 599999888887643 377899999998 55543 44555555554332222 21111
Q ss_pred cCCCCchHHHHHHHHHH
Q 007567 240 DDDQCIEDDFSAWRELV 256 (598)
Q Consensus 240 D~~~~~e~~f~~W~~~l 256 (598)
+ ....++++.+|.+++
T Consensus 143 ~-~~~~~~~i~~wl~~~ 158 (160)
T PRK07116 143 N-GGASKEEIKEWINKL 158 (160)
T ss_pred c-CCCcHHHHHHHHHHc
Confidence 1 112366799998764
No 71
>cd06214 PA_degradation_oxidoreductase_like NAD(P) binding domain of ferredoxin reductase like phenylacetic acid (PA) degradation oxidoreductase. PA oxidoreductases of E. coli hydroxylate PA-CoA in the second step of PA degradation. Members of this group typically fuse a ferredoxin reductase-like domain with an iron-sulfur binding cluster domain. Ferredoxins catalyze electron transfer between an NAD(P)-binding domain of the alpha/beta class and a discrete (usually N-terminal) domain which vary in orientation with respect to the NAD(P) binding domain. The N-terminal portion may contain a flavin prosthetic group, as in flavoenzymes, or use flavin as a substrate. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and
Probab=99.03 E-value=6.4e-10 Score=112.03 Aligned_cols=82 Identities=22% Similarity=0.327 Sum_probs=66.1
Q ss_pred CCcccccCCCCCCCCCeEEEEEEEEEeeCCCCCcccCcchHHhh-ccCCCCCCCCCceEEEEEeCCCccCCCC-CCCcEE
Q 007567 491 QPRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLCSTWMK-NSLPMEKSNDCSWAPIFVRQSNFKLPAD-AKVPII 568 (598)
Q Consensus 491 ~pR~YSIsSsp~~~~~~i~itv~~v~~~~~~g~~~~G~~S~~L~-~~~~~~~~~~~~~~~i~v~~s~F~lp~~-~~~PiI 568 (598)
.+|.|||+|.|.. +.++|+|+++ ..|.+|+||. ++.+++ .+.|..+.|.|.++.+ ...++|
T Consensus 50 ~~r~ysi~s~~~~--~~l~~~i~~~---------~~G~~s~~l~~~~~~G~------~v~i~gP~G~~~~~~~~~~~~~l 112 (241)
T cd06214 50 VRRSYSICSSPGD--DELRITVKRV---------PGGRFSNWANDELKAGD------TLEVMPPAGRFTLPPLPGARHYV 112 (241)
T ss_pred eeeeeeecCCCCC--CcEEEEEEEc---------CCCccchhHHhccCCCC------EEEEeCCccccccCCCCCCCcEE
Confidence 5799999998764 3799888765 3689999997 565543 5666666789988876 578999
Q ss_pred EEeCCCChHhHHHHHHHHhhc
Q 007567 569 MIGPGTGLAPFRGSWSRTGTL 589 (598)
Q Consensus 569 mIg~GTGiAPfr~flqer~~~ 589 (598)
|||+|||||||+++++++...
T Consensus 113 lia~GtGiap~~~~~~~~~~~ 133 (241)
T cd06214 113 LFAAGSGITPVLSILKTALAR 133 (241)
T ss_pred EEecccChhhHHHHHHHHHhc
Confidence 999999999999999997654
No 72
>PF07972 Flavodoxin_NdrI: NrdI Flavodoxin like ; InterPro: IPR004465 Ribonucleotide reductases (RNRs) are enzymes that provide the precursors of DNA synthesis. The three characterised classes of RNRs differ by their metal cofactor and their stable organic radical. Class Ib RNR is encoded in four different genes: nrdH, nrdI, nrdE and nrdF []. The exact function of NrdI within the ribonucleotide reductases has not yet been fully characterised.; PDB: 1RLJ_A 3N39_C 3N3B_D 3N3A_C 2XOE_A 2XOD_A 2X2P_A 2X2O_A.
Probab=99.02 E-value=1.2e-09 Score=99.10 Aligned_cols=115 Identities=26% Similarity=0.386 Sum_probs=70.6
Q ss_pred EEEeCCCchHHHHHHHHHHHHHhhcCCceeEEEcCCCCCCcchHHHHhhccCCeEEEEEecCCCCC----cchHHHHHHH
Q 007567 109 IFFGTQTGTAEGFAKALADEARARYDKAIFKVVDIDDYADEEDEYEEKLKKENIVFFFLATYGDGE----PTDNAARFYK 184 (598)
Q Consensus 109 I~YgSqTGtae~~A~~la~~l~~~~~~~~~~v~dl~~~~~~~~~~~~~l~~~~~vIf~~sTyG~Ge----ppdna~~F~~ 184 (598)
|+|.|.|||+++|+++|...+.. .-+.+...+. .+.-...+|++++|||.|+ .|+...+|++
T Consensus 1 I~Y~S~tGNt~rFv~kL~~~~~~-------~~i~~~~~~~-------~~~~~ep~vLitpTy~~G~~~~~vp~~v~~FL~ 66 (122)
T PF07972_consen 1 IYYSSLTGNTRRFVEKLGLYAPA-------IRIPIREISP-------DLEVDEPFVLITPTYGFGENDGGVPKQVIRFLE 66 (122)
T ss_dssp EEE--SSSHHHHHHHHH-S--SE-------EEE-SSCTTS-------TS--SS-EEEEEE-BTTTBSSTSS-HHHHHHHH
T ss_pred CEEECCCcCHHHHHHHHcccchh-------cccccccccc-------cccCCCCEEEEecccCCCCCCCCCCHHHHHHHH
Confidence 79999999999999988764322 1122222211 2344567999999999999 9999999887
Q ss_pred HHHhhcCCCcccCCceEEEEeecCCcc-hhHhHHHHHHHHHHHhcCCeEeecceeccCCCCchHHHHHH
Q 007567 185 WFTEQKEGGEWLQKLKYGVFGLGNRQY-EHFNKIAKVVDEILANQGAKRLVPVGLGDDDQCIEDDFSAW 252 (598)
Q Consensus 185 ~L~~~~~~~~~l~~~~yaVFGLGds~Y-~~Fn~~~k~ld~~L~~lGA~ri~~~g~gD~~~~~e~~f~~W 252 (598)
+-.+. ..-.+|.|.||++| +.||.+|+.+.+++ |.-.|+.. +-.+.++|.+.-
T Consensus 67 ~~~N~--------~~l~GVigSGNrNfg~~f~~aa~~ia~ky---~VPll~kf----El~Gt~~Dv~~v 120 (122)
T PF07972_consen 67 NPDNR--------KLLRGVIGSGNRNFGDNFCLAADKIAEKY---GVPLLYKF----ELSGTPEDVERV 120 (122)
T ss_dssp SHHHG--------GGEEEEEEEE-GGGGGGTTHHHHHHHHHH---T--EEEEE----ETT--HHHHHHH
T ss_pred HHHHH--------hhheeEEecCCcHHHHHHHHHHHHHHHHc---CCCEEEEE----ecCCCHHHHHHH
Confidence 55442 45679999999999 78999999998765 44444332 233556665543
No 73
>PRK08051 fre FMN reductase; Validated
Probab=99.02 E-value=5.5e-10 Score=112.45 Aligned_cols=86 Identities=19% Similarity=0.196 Sum_probs=65.8
Q ss_pred CCCCCcccccCCCCCCCCCeEEEEEEEEEeeCCCCCcccCcchHHh-hccCCCCCCCCCceEEEEEeCCCccCCCCCCCc
Q 007567 488 PRLQPRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLCSTWM-KNSLPMEKSNDCSWAPIFVRQSNFKLPADAKVP 566 (598)
Q Consensus 488 p~l~pR~YSIsSsp~~~~~~i~itv~~v~~~~~~g~~~~G~~S~~L-~~~~~~~~~~~~~~~~i~v~~s~F~lp~~~~~P 566 (598)
|....|.|||+|+|.. .+.++|+|+.+. .|..++++ .++.++ +.+.|..+.|.|.++.+...|
T Consensus 41 ~~~~~r~ySias~p~~-~~~l~~~v~~~~---------~~~~~~~~~~~l~~G------~~v~v~gP~G~~~~~~~~~~~ 104 (232)
T PRK08051 41 GEKDKRPFSIASTPRE-KGFIELHIGASE---------LNLYAMAVMERILKD------GEIEVDIPHGDAWLREESERP 104 (232)
T ss_pred CCCcceeecccCCCCC-CCcEEEEEEEcC---------CCcchHHHHHHcCCC------CEEEEEcCCCceEccCCCCCc
Confidence 5556799999999864 467999887642 35555555 455554 356677778999887666789
Q ss_pred EEEEeCCCChHhHHHHHHHHhhc
Q 007567 567 IIMIGPGTGLAPFRGSWSRTGTL 589 (598)
Q Consensus 567 iImIg~GTGiAPfr~flqer~~~ 589 (598)
+||||+|||||||++++++....
T Consensus 105 ~vliagG~GiaP~~~~l~~~~~~ 127 (232)
T PRK08051 105 LLLIAGGTGFSYARSILLTALAQ 127 (232)
T ss_pred EEEEecCcCcchHHHHHHHHHHh
Confidence 99999999999999999998764
No 74
>cd06216 FNR_iron_sulfur_binding_2 Iron-sulfur binding ferredoxin reductase (FNR) proteins combine the FAD and NAD(P) binding regions of FNR with an iron-sulfur binding cluster domain. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap betweed the two domains. Ferredoxin-NADP+ reductase first accepts one electron from reduced ferredoxin to form a flavin semiquinone intermediate. The enzyme then accepts a second electron to for
Probab=99.01 E-value=7.3e-10 Score=112.05 Aligned_cols=83 Identities=28% Similarity=0.411 Sum_probs=66.7
Q ss_pred CcccccCCCCCCCCCeEEEEEEEEEeeCCCCCcccCcchHHhhc-cCCCCCCCCCceEEEEEeCCCccCCCCCCCcEEEE
Q 007567 492 PRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLCSTWMKN-SLPMEKSNDCSWAPIFVRQSNFKLPADAKVPIIMI 570 (598)
Q Consensus 492 pR~YSIsSsp~~~~~~i~itv~~v~~~~~~g~~~~G~~S~~L~~-~~~~~~~~~~~~~~i~v~~s~F~lp~~~~~PiImI 570 (598)
+|.|||+|+|....+.++|+|+.+ ..|.+|.||.+ +.+++ .+.|..+.|+|.+|.+...++|||
T Consensus 64 ~r~ysi~s~~~~~~~~l~~~ik~~---------~~G~~s~~l~~~~~~Gd------~v~i~gP~G~f~l~~~~~~~~v~i 128 (243)
T cd06216 64 WRSYSLSSSPTQEDGTITLTVKAQ---------PDGLVSNWLVNHLAPGD------VVELSQPQGDFVLPDPLPPRLLLI 128 (243)
T ss_pred EEEEeccCCCcCCCCeEEEEEEEc---------CCCcchhHHHhcCCCCC------EEEEECCceeeecCCCCCCCEEEE
Confidence 599999999862247899988764 25889999986 55543 456666678999987766899999
Q ss_pred eCCCChHhHHHHHHHHhhc
Q 007567 571 GPGTGLAPFRGSWSRTGTL 589 (598)
Q Consensus 571 g~GTGiAPfr~flqer~~~ 589 (598)
|+|||||||+++|++....
T Consensus 129 agG~Giap~~s~l~~~~~~ 147 (243)
T cd06216 129 AAGSGITPVMSMLRTLLAR 147 (243)
T ss_pred ecCccHhHHHHHHHHHHhc
Confidence 9999999999999998654
No 75
>cd06195 FNR1 Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap betweed the two domains. Ferredoxin-NADP+ reductase first accepts one electron from reduced ferredoxin to form a flavin semiquinone intermediate. The enzyme then accepts a second electron to form FADH2 which then transfers two electrons and a proton to NADP+ to form NADPH.
Probab=99.01 E-value=7.3e-10 Score=111.89 Aligned_cols=82 Identities=21% Similarity=0.222 Sum_probs=65.9
Q ss_pred CCcccccCCCCCCCCCeEEEEEEEEEeeCCCCCcccCcchHHhhccCCCCCCCCCceEEEE-EeCCCccCCCC-CCCcEE
Q 007567 491 QPRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLCSTWMKNSLPMEKSNDCSWAPIF-VRQSNFKLPAD-AKVPII 568 (598)
Q Consensus 491 ~pR~YSIsSsp~~~~~~i~itv~~v~~~~~~g~~~~G~~S~~L~~~~~~~~~~~~~~~~i~-v~~s~F~lp~~-~~~PiI 568 (598)
..|.|||+|.|.. +.++|+|.++ ..|.+|+||+++.+++ .+.+. -+.|+|.++.. ...|+|
T Consensus 43 ~~R~ySi~s~~~~--~~i~~~i~~~---------~~G~~s~~l~~l~~Gd------~v~v~~gP~G~f~~~~~~~~~~~v 105 (241)
T cd06195 43 VRRAYSIASAPYE--ENLEFYIILV---------PDGPLTPRLFKLKPGD------TIYVGKKPTGFLTLDEVPPGKRLW 105 (241)
T ss_pred eeecccccCCCCC--CeEEEEEEEe---------cCCCCchHHhcCCCCC------EEEECcCCCCceeecCCCCCceEE
Confidence 4599999999854 6788888765 3689999999877654 45665 45688998765 458999
Q ss_pred EEeCCCChHhHHHHHHHHhhc
Q 007567 569 MIGPGTGLAPFRGSWSRTGTL 589 (598)
Q Consensus 569 mIg~GTGiAPfr~flqer~~~ 589 (598)
|||+|||||||++++++....
T Consensus 106 lIagGtGiaP~~~~l~~~~~~ 126 (241)
T cd06195 106 LLATGTGIAPFLSMLRDLEIW 126 (241)
T ss_pred EEeeccchhhHHHHHHHHHhh
Confidence 999999999999999998643
No 76
>cd06215 FNR_iron_sulfur_binding_1 Iron-sulfur binding ferredoxin reductase (FNR) proteins combine the FAD and NAD(P) binding regions of FNR with an iron-sulfur binding cluster domain. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal portion of the FAD/NAD binding domain contains most of the NADP(H) binding residues and the N-terminal sub-domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap betweed the two domains. In this ferredoxin like sub-group, the FAD/NAD sub-domains is typically fused to a C-terminal iron-sulfur binding domain. Iron-sulfur pr
Probab=99.00 E-value=8.2e-10 Score=110.47 Aligned_cols=84 Identities=23% Similarity=0.304 Sum_probs=66.4
Q ss_pred CCcccccCCCCCCCCCeEEEEEEEEEeeCCCCCcccCcchHHhh-ccCCCCCCCCCceEEEEEeCCCccCCCCCCCcEEE
Q 007567 491 QPRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLCSTWMK-NSLPMEKSNDCSWAPIFVRQSNFKLPADAKVPIIM 569 (598)
Q Consensus 491 ~pR~YSIsSsp~~~~~~i~itv~~v~~~~~~g~~~~G~~S~~L~-~~~~~~~~~~~~~~~i~v~~s~F~lp~~~~~PiIm 569 (598)
..|.|||+|.|.. .++++|+|+++ ..|.+|.||. ++.+++ .+.|..+.|.|.++.+...++||
T Consensus 45 ~~R~ySi~s~~~~-~~~l~~~vk~~---------~~G~~s~~l~~~~~~G~------~v~i~gP~G~f~~~~~~~~~~vl 108 (231)
T cd06215 45 VYRAYTLSSSPSR-PDSLSITVKRV---------PGGLVSNWLHDNLKVGD------ELWASGPAGEFTLIDHPADKLLL 108 (231)
T ss_pred EEEeeecccCCCC-CCcEEEEEEEc---------CCCcchHHHHhcCCCCC------EEEEEcCcceeEeCCCCCCcEEE
Confidence 3699999999864 45799988754 2589999997 466543 45666667889987655689999
Q ss_pred EeCCCChHhHHHHHHHHhhcc
Q 007567 570 IGPGTGLAPFRGSWSRTGTLS 590 (598)
Q Consensus 570 Ig~GTGiAPfr~flqer~~~~ 590 (598)
||+|||||||++++++....+
T Consensus 109 IagG~Giap~~~~l~~~~~~~ 129 (231)
T cd06215 109 LSAGSGITPMMSMARWLLDTR 129 (231)
T ss_pred EecCcCcchHHHHHHHHHhcC
Confidence 999999999999999987543
No 77
>PRK08221 anaerobic sulfite reductase subunit B; Provisional
Probab=98.99 E-value=8.5e-10 Score=113.39 Aligned_cols=90 Identities=21% Similarity=0.202 Sum_probs=67.1
Q ss_pred hhhHhhhcCCCCCcccccCCCCCCCCCeEEEEEEEEEeeCCCCCcccCcchHHhhccCCCCCCCCCceEEEEEeCCC-cc
Q 007567 480 GVFFAAIVPRLQPRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLCSTWMKNSLPMEKSNDCSWAPIFVRQSN-FK 558 (598)
Q Consensus 480 ~~ll~~i~p~l~pR~YSIsSsp~~~~~~i~itv~~v~~~~~~g~~~~G~~S~~L~~~~~~~~~~~~~~~~i~v~~s~-F~ 558 (598)
++++..-+|...+|.|||++.+ .++++|+|+. .|.+|+||.++.+++ .+.|.-+.++ |.
T Consensus 36 GQfi~l~~~~~~~~pySi~~~~---~~~~~~~Ik~-----------~G~~S~~L~~l~~Gd------~v~v~gP~G~~f~ 95 (263)
T PRK08221 36 GQFFEVSLPKVGEAPISVSDYG---DGYIDLTIRR-----------VGKVTDEIFNLKEGD------KLFLRGPYGNGFP 95 (263)
T ss_pred CceEEEEeCCCCcceeeccCCC---CCEEEEEEEe-----------CCchhhHHHhCCCCC------EEEEECCCCCCcc
Confidence 4554322354456999999875 4678888853 389999999877754 4455445566 88
Q ss_pred CCCCCCCcEEEEeCCCChHhHHHHHHHHhhc
Q 007567 559 LPADAKVPIIMIGPGTGLAPFRGSWSRTGTL 589 (598)
Q Consensus 559 lp~~~~~PiImIg~GTGiAPfr~flqer~~~ 589 (598)
++....+|+||||+|||||||+++|++....
T Consensus 96 ~~~~~~~~~llIAgGtGItP~~sil~~~~~~ 126 (263)
T PRK08221 96 VDTYKGKELIVVAGGTGVAPVKGLMRYFYEN 126 (263)
T ss_pred cCccCCccEEEEcccccHHHHHHHHHHHHhC
Confidence 8766668999999999999999999987653
No 78
>PRK11872 antC anthranilate dioxygenase reductase; Provisional
Probab=98.99 E-value=9.9e-10 Score=117.04 Aligned_cols=81 Identities=20% Similarity=0.350 Sum_probs=65.9
Q ss_pred CcccccCCCCCCCCCeEEEEEEEEEeeCCCCCcccCcchHHhhc-cCCCCCCCCCceEEEEEeCCCccCCCCCCCcEEEE
Q 007567 492 PRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLCSTWMKN-SLPMEKSNDCSWAPIFVRQSNFKLPADAKVPIIMI 570 (598)
Q Consensus 492 pR~YSIsSsp~~~~~~i~itv~~v~~~~~~g~~~~G~~S~~L~~-~~~~~~~~~~~~~~i~v~~s~F~lp~~~~~PiImI 570 (598)
.|.|||+|+|.. .+.++|+|+.+ ..|.+|+||.+ +.+++ .+.|..+.|.|.++. ..+|+|||
T Consensus 153 ~R~ySias~p~~-~~~l~~~ik~~---------~~G~~s~~L~~~l~~G~------~v~i~gP~G~f~l~~-~~~~~vli 215 (340)
T PRK11872 153 WRSYSFANRPNA-TNQLQFLIRLL---------PDGVMSNYLRERCQVGD------EILFEAPLGAFYLRE-VERPLVFV 215 (340)
T ss_pred eeecccCCCCCC-CCeEEEEEEEC---------CCCcchhhHhhCCCCCC------EEEEEcCcceeEeCC-CCCcEEEE
Confidence 699999999864 47899999765 36899999975 65543 566666789999864 35899999
Q ss_pred eCCCChHhHHHHHHHHhhc
Q 007567 571 GPGTGLAPFRGSWSRTGTL 589 (598)
Q Consensus 571 g~GTGiAPfr~flqer~~~ 589 (598)
|+|||||||++++++....
T Consensus 216 agGtGiaP~~s~l~~~~~~ 234 (340)
T PRK11872 216 AGGTGLSAFLGMLDELAEQ 234 (340)
T ss_pred eCCcCccHHHHHHHHHHHc
Confidence 9999999999999998754
No 79
>PRK08345 cytochrome-c3 hydrogenase subunit gamma; Provisional
Probab=98.97 E-value=1e-09 Score=114.38 Aligned_cols=93 Identities=19% Similarity=0.221 Sum_probs=68.4
Q ss_pred hhhHhhhcCCCCCcccccCCCCCCCCCeEEEEEEEEEeeCCCCCcccCcchHHhhccCCCCCCCCCceEEEEEeCCC-cc
Q 007567 480 GVFFAAIVPRLQPRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLCSTWMKNSLPMEKSNDCSWAPIFVRQSN-FK 558 (598)
Q Consensus 480 ~~ll~~i~p~l~pR~YSIsSsp~~~~~~i~itv~~v~~~~~~g~~~~G~~S~~L~~~~~~~~~~~~~~~~i~v~~s~-F~ 558 (598)
++++..-+|....|.|||+|+|.. ++.++|+|+. .|.+|.||.++.+++ .+.|.-+.+. |.
T Consensus 41 GQ~v~l~~~~~~~~pySias~p~~-~~~l~l~Ik~-----------~G~~S~~L~~l~~Gd------~v~v~gP~G~~f~ 102 (289)
T PRK08345 41 GQFVQVTIPGVGEVPISICSSPTR-KGFFELCIRR-----------AGRVTTVIHRLKEGD------IVGVRGPYGNGFP 102 (289)
T ss_pred CCEEEEEcCCCCceeeEecCCCCC-CCEEEEEEEe-----------CChHHHHHHhCCCCC------EEEEeCCCCCCCC
Confidence 445432234444689999999864 4689988863 388999999877653 4555556677 66
Q ss_pred CCCCCCCcEEEEeCCCChHhHHHHHHHHhhcc
Q 007567 559 LPADAKVPIIMIGPGTGLAPFRGSWSRTGTLS 590 (598)
Q Consensus 559 lp~~~~~PiImIg~GTGiAPfr~flqer~~~~ 590 (598)
++....+|+||||+|||||||++++++....+
T Consensus 103 ~~~~~~~~~llIAgGtGIaP~~s~l~~~l~~~ 134 (289)
T PRK08345 103 VDEMEGMDLLLIAGGLGMAPLRSVLLYAMDNR 134 (289)
T ss_pred cccccCceEEEEecccchhHHHHHHHHHHhcC
Confidence 65544579999999999999999999877543
No 80
>cd06196 FNR_like_1 Ferredoxin reductase-like proteins catalyze electron transfer between an NAD(P)-binding domain of the alpha/beta class and a discrete (usually N-terminal) domain which varies in orientation with respect to the NAD(P) binding domain. The N-terminal region may contain a flavin prosthetic group (as in flavoenzymes) or use flavin as a substrate. Ferredoxin is reduced in the final stage of photosystem I. The flavoprotein Ferredoxin-NADP+ reductase transfers electrons from reduced ferredoxin to FAD (forming FADH2 via a semiquinone intermediate) which then transfers a hydride ion to convert NADP+ to NADPH.
Probab=98.97 E-value=1.3e-09 Score=108.18 Aligned_cols=79 Identities=14% Similarity=0.136 Sum_probs=62.6
Q ss_pred CCcccccCCCCCCCCCeEEEEEEEEEeeCCCCCcccCcchHHhhccCCCCCCCCCceEEEEEeCCCccCCCCCCCcEEEE
Q 007567 491 QPRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLCSTWMKNSLPMEKSNDCSWAPIFVRQSNFKLPADAKVPIIMI 570 (598)
Q Consensus 491 ~pR~YSIsSsp~~~~~~i~itv~~v~~~~~~g~~~~G~~S~~L~~~~~~~~~~~~~~~~i~v~~s~F~lp~~~~~PiImI 570 (598)
..|.|||+|+|.. +.++|+|+++. ..|..|.||.++.+++ .+.+.-+.++|.++ .|+|||
T Consensus 46 ~~r~ySi~s~~~~--~~l~~~vk~~~--------~~g~~s~~l~~l~~G~------~v~i~gP~G~~~~~----~~~vli 105 (218)
T cd06196 46 EKRPFTFTSLPED--DVLEFVIKSYP--------DHDGVTEQLGRLQPGD------TLLIEDPWGAIEYK----GPGVFI 105 (218)
T ss_pred cccccccccCCCC--CeEEEEEEEcC--------CCCcHhHHHHhCCCCC------EEEEECCccceEec----CceEEE
Confidence 4799999999853 68999887642 1356799999887764 45565567888763 589999
Q ss_pred eCCCChHhHHHHHHHHhhc
Q 007567 571 GPGTGLAPFRGSWSRTGTL 589 (598)
Q Consensus 571 g~GTGiAPfr~flqer~~~ 589 (598)
|+|||||||+++++++...
T Consensus 106 a~GtGiaP~~s~l~~~~~~ 124 (218)
T cd06196 106 AGGAGITPFIAILRDLAAK 124 (218)
T ss_pred ecCCCcChHHHHHHHHHhC
Confidence 9999999999999998864
No 81
>cd06218 DHOD_e_trans FAD/NAD binding domain in the electron transfer subunit of dihydroorotate dehydrogenase. Dihydroorotate dehydrogenases (DHODs) catalyze the only redox reaction in pyrimidine de novo biosynthesis. They catalyze the oxidation of (S)-dihydroorotate to orotate coupled with the reduction of NAD+. In L. lactis, DHOD B (encoded by pyrDa) is co-expressed with pyrK and both gene products are required for full activity, as well as 3 cofactors: FMN, FAD, and an [2Fe-2S] cluster.
Probab=98.97 E-value=2.2e-09 Score=109.11 Aligned_cols=80 Identities=19% Similarity=0.226 Sum_probs=63.9
Q ss_pred CCCcccccCCCCCCCCCeEEEEEEEEEeeCCCCCcccCcchHHhhccCCCCCCCCCceEEEEEeCCC-ccCCCCCCCcEE
Q 007567 490 LQPRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLCSTWMKNSLPMEKSNDCSWAPIFVRQSN-FKLPADAKVPII 568 (598)
Q Consensus 490 l~pR~YSIsSsp~~~~~~i~itv~~v~~~~~~g~~~~G~~S~~L~~~~~~~~~~~~~~~~i~v~~s~-F~lp~~~~~PiI 568 (598)
...|.|||+|+|.. .+.++|+|+. .|.+|+||.++++++ .+.|..+.+. |.++. ...|+|
T Consensus 42 ~~~R~ySi~s~~~~-~~~l~l~v~~-----------~G~~s~~l~~l~~Gd------~v~i~gP~G~~~~~~~-~~~~~v 102 (246)
T cd06218 42 LLRRPISIHDVDPE-EGTITLLYKV-----------VGKGTRLLSELKAGD------ELDVLGPLGNGFDLPD-DDGKVL 102 (246)
T ss_pred cCCCceEeeeccCC-CCEEEEEEEE-----------ECcchHHHhcCCCCC------EEEEEecCCCCcCCCC-CCCcEE
Confidence 45799999998854 3678887764 267899999887753 5666667775 77774 568999
Q ss_pred EEeCCCChHhHHHHHHHHhh
Q 007567 569 MIGPGTGLAPFRGSWSRTGT 588 (598)
Q Consensus 569 mIg~GTGiAPfr~flqer~~ 588 (598)
|||+|||||||++++++...
T Consensus 103 lIagGtGIaP~~s~l~~~~~ 122 (246)
T cd06218 103 LVGGGIGIAPLLFLAKQLAE 122 (246)
T ss_pred EEecccCHHHHHHHHHHHHh
Confidence 99999999999999999875
No 82
>TIGR02160 PA_CoA_Oxy5 phenylacetate-CoA oxygenase/reductase, PaaK subunit. Phenylacetate-CoA oxygenase is comprised of a five gene complex responsible for the hydroxylation of phenylacetate-CoA (PA-CoA) as the second catabolic step in phenylacetic acid (PA) degradation. Although the exact function of this enzyme has not been determined, it has been shown to be required for phenylacetic acid degradation and has been proposed to function in a multicomponent oxygenase acting on phenylacetate-CoA.
Probab=98.96 E-value=1.4e-09 Score=116.13 Aligned_cols=81 Identities=25% Similarity=0.375 Sum_probs=64.0
Q ss_pred CcccccCCCCCCCCCeEEEEEEEEEeeCCCCCcccCcchHHhh-ccCCCCCCCCCceEEEEEeCCCccCCCCC--CCcEE
Q 007567 492 PRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLCSTWMK-NSLPMEKSNDCSWAPIFVRQSNFKLPADA--KVPII 568 (598)
Q Consensus 492 pR~YSIsSsp~~~~~~i~itv~~v~~~~~~g~~~~G~~S~~L~-~~~~~~~~~~~~~~~i~v~~s~F~lp~~~--~~PiI 568 (598)
.|.|||+|+|. .+.++|+|+.+. .|.+|+||. ++.+++ .+.|.-+.|+|.++.+. ..++|
T Consensus 51 ~R~ySi~s~p~--~~~l~i~vk~~~---------~G~~S~~l~~~l~~Gd------~v~v~gP~G~f~~~~~~~~~~~~l 113 (352)
T TIGR02160 51 RRSYSICSAPA--PGEIRVAVKKIP---------GGLFSTWANDEIRPGD------TLEVMAPQGLFTPDLSTPHAGHYV 113 (352)
T ss_pred eeeccccCCCC--CCcEEEEEEEeC---------CCcchHHHHhcCCCCC------EEEEeCCceeeecCCCccccccEE
Confidence 59999999984 468999998652 589999997 455543 45565567889887543 37999
Q ss_pred EEeCCCChHhHHHHHHHHhhc
Q 007567 569 MIGPGTGLAPFRGSWSRTGTL 589 (598)
Q Consensus 569 mIg~GTGiAPfr~flqer~~~ 589 (598)
|||+|||||||+++|++....
T Consensus 114 liagG~GItP~~s~l~~~~~~ 134 (352)
T TIGR02160 114 AVAAGSGITPMLSIAETVLAA 134 (352)
T ss_pred EEeccccHhHHHHHHHHHHhc
Confidence 999999999999999987654
No 83
>cd06185 PDR_like Phthalate dioxygenase reductase (PDR) is an FMN-dependent reductase that mediates electron transfer from NADH to FMN to an iron sulfur cluster. PDR has an an N-terminal ferrredoxin reductase (FNR)-like NAD(H) binding domain and a C-terminal iron-sulfur [2Fe-2S] cluster domain. Although structurally homologous to FNR, PDR binds FMN rather than FAD in it's FNR-like domain. Electron transfer between pyrimidines and iron-sulfur clusters (Rieske center [2Fe-2S]) or heme groups is mediated by flavins in respiration, photosynthesis, and oxygenase systems. Type I dioxygenase systems, including the hydroxylate phthalate system, have 2 components, a monomeric reductase consisting of a flavin and a 2Fe-2S center and a multimeric oxygenase. In contrast to other Rieske dioxygenases the ferredoxin like domain is C-, not N-terminal.
Probab=98.94 E-value=2e-09 Score=106.22 Aligned_cols=94 Identities=17% Similarity=0.199 Sum_probs=68.2
Q ss_pred hhhHhhhcCCCCCcccccCCCCCCCCCeEEEEEEEEEeeCCCCCcccCcchHHhhccCCCCCCCCCceEEEEEeCCCccC
Q 007567 480 GVFFAAIVPRLQPRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLCSTWMKNSLPMEKSNDCSWAPIFVRQSNFKL 559 (598)
Q Consensus 480 ~~ll~~i~p~l~pR~YSIsSsp~~~~~~i~itv~~v~~~~~~g~~~~G~~S~~L~~~~~~~~~~~~~~~~i~v~~s~F~l 559 (598)
++++..-+|....|.|||+|.|.. .+.++|+|+.+. ..+.+|.||.+..+.+ +.+.|..+.+.|.+
T Consensus 29 GQ~~~l~~~~~~~r~ySi~s~~~~-~~~l~~~v~~~~--------~g~~~s~~l~~~~~~G-----d~v~i~gP~g~f~~ 94 (211)
T cd06185 29 GAHIDVHLPNGLVRQYSLCGDPAD-RDRYRIAVLREP--------ASRGGSRYMHELLRVG-----DELEVSAPRNLFPL 94 (211)
T ss_pred CceEEEEcCCCCceeeeccCCCCC-CCEEEEEEEecc--------CCCchHHHHHhcCCCC-----CEEEEcCCccCCcC
Confidence 444432235556899999999864 478999887542 1235799997643322 35666666788988
Q ss_pred CCCCCCcEEEEeCCCChHhHHHHHHHHhh
Q 007567 560 PADAKVPIIMIGPGTGLAPFRGSWSRTGT 588 (598)
Q Consensus 560 p~~~~~PiImIg~GTGiAPfr~flqer~~ 588 (598)
+.+ ..|+||||+||||||+++++++...
T Consensus 95 ~~~-~~~~v~ia~GtGiap~~~il~~~~~ 122 (211)
T cd06185 95 DEA-ARRHLLIAGGIGITPILSMARALAA 122 (211)
T ss_pred CCC-CCcEEEEeccchHhHHHHHHHHHHh
Confidence 654 5799999999999999999999865
No 84
>cd06198 FNR_like_3 NAD(P) binding domain of ferredoxin reductase-like proteins catalyze electron transfer between an NAD(P)-binding sub-domain of the alpha/beta class and a discrete (usually N-terminal) domain, which varies in orientation with respect to the NAD(P) binding domain. The N-terminal domain may contain a flavin prosthetic group (as in flavoenzymes) or use flavin as a substrate. Ferredoxin is reduced in the final stage of photosystem I. The flavoprotein Ferredoxin-NADP+ reductase transfers electrons from reduced ferredoxin to FAD (forming FADH2 via a semiquinone intermediate) which then transfers a hydride ion to convert NADP+ to NADPH.
Probab=98.93 E-value=3e-09 Score=105.54 Aligned_cols=82 Identities=20% Similarity=0.268 Sum_probs=65.8
Q ss_pred CCCcccccCCCCCCCCCeEEEEEEEEEeeCCCCCcccCcchHHhh-ccCCCCCCCCCceEEEEEeCCCccCCCCCCCcEE
Q 007567 490 LQPRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLCSTWMK-NSLPMEKSNDCSWAPIFVRQSNFKLPADAKVPII 568 (598)
Q Consensus 490 l~pR~YSIsSsp~~~~~~i~itv~~v~~~~~~g~~~~G~~S~~L~-~~~~~~~~~~~~~~~i~v~~s~F~lp~~~~~PiI 568 (598)
...|.|||+|.|.. .+.++|+|+. .|..|.||. ++.+++ .+.|..+.|.|.++.. ..+++
T Consensus 39 ~~~r~ySi~s~~~~-~~~l~l~vk~-----------~G~~t~~l~~~l~~G~------~v~i~gP~G~~~~~~~-~~~~v 99 (216)
T cd06198 39 EEPHPFTISSAPDP-DGRLRFTIKA-----------LGDYTRRLAERLKPGT------RVTVEGPYGRFTFDDR-RARQI 99 (216)
T ss_pred CCCCCcEEecCCCC-CCeEEEEEEe-----------CChHHHHHHHhCCCCC------EEEEECCCCCCccccc-CceEE
Confidence 56899999998864 3689988863 377899998 666543 4566666789998866 78999
Q ss_pred EEeCCCChHhHHHHHHHHhhcc
Q 007567 569 MIGPGTGLAPFRGSWSRTGTLS 590 (598)
Q Consensus 569 mIg~GTGiAPfr~flqer~~~~ 590 (598)
|||+||||||+++++++....+
T Consensus 100 lia~GtGiap~~~~l~~~~~~~ 121 (216)
T cd06198 100 WIAGGIGITPFLALLEALAARG 121 (216)
T ss_pred EEccccCHHHHHHHHHHHHhcC
Confidence 9999999999999999987654
No 85
>cd06183 cyt_b5_reduct_like Cytochrome b5 reductase catalyzes the reduction of 2 molecules of cytochrome b5 using NADH as an electron donor. Like ferredoxin reductases, these proteins have an N-terminal FAD binding subdomain and a C-terminal NADH binding subdomain, separated by a cleft, which accepts FAD. The NADH-binding moiety interacts with part of the FAD and resembles a Rossmann fold. However, NAD is bound differently than in canonical Rossmann fold proteins. Nitrate reductases, flavoproteins similar to pyridine nucleotide cytochrome reductases, catalyze the reduction of nitrate to nitrite. The enzyme can be divided into three functional fragments that bind the cofactors molybdopterin, heme-iron, and FAD/NADH.
Probab=98.91 E-value=3.1e-09 Score=106.24 Aligned_cols=84 Identities=19% Similarity=0.135 Sum_probs=66.7
Q ss_pred CCCcccccCCCCCCCCCeEEEEEEEEEeeCCCCCcccCcchHHhhccCCCCCCCCCceEEEEEeCCCccCCCCCC-CcEE
Q 007567 490 LQPRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLCSTWMKNSLPMEKSNDCSWAPIFVRQSNFKLPADAK-VPII 568 (598)
Q Consensus 490 l~pR~YSIsSsp~~~~~~i~itv~~v~~~~~~g~~~~G~~S~~L~~~~~~~~~~~~~~~~i~v~~s~F~lp~~~~-~PiI 568 (598)
...|.|||+|++.. .+.++|+|+.+. .|.+|.||+++.+++ .+.|.-+.+.|.++.+.. .++|
T Consensus 45 ~~~R~ysi~s~~~~-~~~~~~~v~~~~---------~G~~s~~l~~~~~G~------~v~i~gP~G~~~~~~~~~~~~~v 108 (234)
T cd06183 45 QVVRPYTPISPDDD-KGYFDLLIKIYP---------GGKMSQYLHSLKPGD------TVEIRGPFGKFEYKPNGKVKHIG 108 (234)
T ss_pred ccccccccccCCCc-CCEEEEEEEECC---------CCcchhHHhcCCCCC------EEEEECCccceeecCCCCccEEE
Confidence 45799999998864 357888887542 589999999876653 455555568898876655 8999
Q ss_pred EEeCCCChHhHHHHHHHHhhc
Q 007567 569 MIGPGTGLAPFRGSWSRTGTL 589 (598)
Q Consensus 569 mIg~GTGiAPfr~flqer~~~ 589 (598)
|||+||||||+++++++....
T Consensus 109 liagGtGiaP~~~~l~~~~~~ 129 (234)
T cd06183 109 MIAGGTGITPMLQLIRAILKD 129 (234)
T ss_pred EEcCCcchhHHHHHHHHHHhC
Confidence 999999999999999998754
No 86
>TIGR02911 sulfite_red_B sulfite reductase, subunit B. Members of this protein family include the B subunit, one of three subunits, of the anaerobic sulfite reductase of Salmonella, and close homologs from various Clostridum species, where the three-gene neighborhood is preserved. Two such gene clusters are found in Clostridium perfringens, but it may be that these sets of genes correspond to the distinct assimilatory and dissimilatory forms as seen in Clostridium pasteurianum.
Probab=98.91 E-value=2.4e-09 Score=109.91 Aligned_cols=89 Identities=19% Similarity=0.200 Sum_probs=66.8
Q ss_pred hhhHhhhcCCCCCcccccCCCCCCCCCeEEEEEEEEEeeCCCCCcccCcchHHhhccCCCCCCCCCceEEEEEeCCC-cc
Q 007567 480 GVFFAAIVPRLQPRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLCSTWMKNSLPMEKSNDCSWAPIFVRQSN-FK 558 (598)
Q Consensus 480 ~~ll~~i~p~l~pR~YSIsSsp~~~~~~i~itv~~v~~~~~~g~~~~G~~S~~L~~~~~~~~~~~~~~~~i~v~~s~-F~ 558 (598)
++++..-+|...+|.|||+|.+ .++++|+|+. .|.+|+||.++.+++ .+.|.-+.|+ |.
T Consensus 34 GQ~v~l~~~~~~~~pySi~~~~---~~~l~~~Vk~-----------~G~~S~~L~~l~~Gd------~v~i~gP~G~~f~ 93 (261)
T TIGR02911 34 GQFFEVSLPKYGEAPISVSGIG---EGYIDLTIRR-----------VGKVTDEVFTLKEGD------NLFLRGPYGNGFD 93 (261)
T ss_pred CcEEEEEecCCCccceecCCCC---CCeEEEEEEe-----------CchhhHHHHcCCCCC------EEEEecCCCCCcc
Confidence 4444323465567999999842 4689988863 389999998876653 4555556677 87
Q ss_pred CCCCCCCcEEEEeCCCChHhHHHHHHHHhh
Q 007567 559 LPADAKVPIIMIGPGTGLAPFRGSWSRTGT 588 (598)
Q Consensus 559 lp~~~~~PiImIg~GTGiAPfr~flqer~~ 588 (598)
++.+..+|++|||+|||||||++++++...
T Consensus 94 ~~~~~~~~~llIAgGtGIaP~~sil~~l~~ 123 (261)
T TIGR02911 94 VDNYKHKELVVVAGGTGVAPVKGVVEYFVK 123 (261)
T ss_pred cCccCCceEEEEecccCcHHHHHHHHHHHh
Confidence 776566899999999999999999998754
No 87
>cd06217 FNR_iron_sulfur_binding_3 Iron-sulfur binding ferredoxin reductase (FNR) proteins combine the FAD and NAD(P) binding regions of FNR with an iron-sulfur binding cluster domain. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap between the two domains. Ferredoxin-NADP+ reductase first accepts one electron from reduced ferredoxin to form a flavin semiquinone intermediate. The enzyme then accepts a second electron to form
Probab=98.89 E-value=3.9e-09 Score=105.86 Aligned_cols=83 Identities=22% Similarity=0.316 Sum_probs=65.4
Q ss_pred CcccccCCCCCCCCCeEEEEEEEEEeeCCCCCcccCcchHHhhc-cCCCCCCCCCceEEEEEeCCCccCCCCCCCcEEEE
Q 007567 492 PRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLCSTWMKN-SLPMEKSNDCSWAPIFVRQSNFKLPADAKVPIIMI 570 (598)
Q Consensus 492 pR~YSIsSsp~~~~~~i~itv~~v~~~~~~g~~~~G~~S~~L~~-~~~~~~~~~~~~~~i~v~~s~F~lp~~~~~PiImI 570 (598)
.|.|||+|.|... +.++|+|+.+ ..|.+|.||.+ +.++ +.+.|..+.|.|.++.....+++||
T Consensus 50 ~r~ySi~s~~~~~-~~l~l~v~~~---------~~G~~s~~l~~~l~~G------d~v~i~gP~G~~~~~~~~~~~~vli 113 (235)
T cd06217 50 QRSYSIASSPTQR-GRVELTVKRV---------PGGEVSPYLHDEVKVG------DLLEVRGPIGTFTWNPLHGDPVVLL 113 (235)
T ss_pred eeeecccCCCCCC-CeEEEEEEEc---------CCCcchHHHHhcCCCC------CEEEEeCCceeeEeCCCCCceEEEE
Confidence 4899999998653 6799988764 25899999986 4554 3566666678888865456899999
Q ss_pred eCCCChHhHHHHHHHHhhcc
Q 007567 571 GPGTGLAPFRGSWSRTGTLS 590 (598)
Q Consensus 571 g~GTGiAPfr~flqer~~~~ 590 (598)
|+||||||+++++++....+
T Consensus 114 agG~Giap~~~~~~~~~~~~ 133 (235)
T cd06217 114 AGGSGIVPLMSMIRYRRDLG 133 (235)
T ss_pred ecCcCccHHHHHHHHHHhcC
Confidence 99999999999999987643
No 88
>PRK00054 dihydroorotate dehydrogenase electron transfer subunit; Reviewed
Probab=98.89 E-value=4.7e-09 Score=106.92 Aligned_cols=77 Identities=19% Similarity=0.157 Sum_probs=62.2
Q ss_pred CCcccccCCCCCCCCCeEEEEEEEEEeeCCCCCcccCcchHHhhccCCCCCCCCCceEEEEEeCCC-ccCCCCCCCcEEE
Q 007567 491 QPRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLCSTWMKNSLPMEKSNDCSWAPIFVRQSN-FKLPADAKVPIIM 569 (598)
Q Consensus 491 ~pR~YSIsSsp~~~~~~i~itv~~v~~~~~~g~~~~G~~S~~L~~~~~~~~~~~~~~~~i~v~~s~-F~lp~~~~~PiIm 569 (598)
.+|.|||+|+| .+.++|+|+. .|..|.||.++.+++ ++.|..+.++ |.++. ...|+||
T Consensus 49 ~~r~ySi~s~~---~~~l~l~Vk~-----------~G~~t~~l~~l~~G~------~v~i~gP~G~~f~l~~-~~~~~vl 107 (250)
T PRK00054 49 LERPISISDID---KNEITILYRK-----------VGEGTKKLSKLKEGD------ELDIRGPLGNGFDLEE-IGGKVLL 107 (250)
T ss_pred CceeeEEeeeC---CCEEEEEEEE-----------cChHHHHHhcCCCCC------EEEEEcccCCCCCCCC-CCCeEEE
Confidence 47999999998 4688888863 378899998876653 5666666665 88864 4589999
Q ss_pred EeCCCChHhHHHHHHHHhh
Q 007567 570 IGPGTGLAPFRGSWSRTGT 588 (598)
Q Consensus 570 Ig~GTGiAPfr~flqer~~ 588 (598)
||+|||||||++++++...
T Consensus 108 IagG~GiaP~~s~l~~~~~ 126 (250)
T PRK00054 108 VGGGIGVAPLYELAKELKK 126 (250)
T ss_pred EeccccHHHHHHHHHHHHH
Confidence 9999999999999999764
No 89
>cd06221 sulfite_reductase_like Anaerobic sulfite reductase contains an FAD and NADPH binding module with structural similarity to ferredoxin reductase and sequence similarity to dihydroorotate dehydrogenases. Clostridium pasteurianum inducible dissimilatory type sulfite reductase is linked to ferredoxin and reduces NH2OH and SeO3 at a lesser rate than it's normal substate SO3(2-). Dihydroorotate dehydrogenases (DHODs) catalyze the only redox reaction in pyrimidine de novo biosynthesis. They catalyze the oxidation of (S)-dihydroorotate to orotate coupled with the reduction of NAD+.
Probab=98.88 E-value=3.7e-09 Score=107.98 Aligned_cols=84 Identities=20% Similarity=0.208 Sum_probs=64.9
Q ss_pred CCCCCcccccCCCCCCCCCeEEEEEEEEEeeCCCCCcccCcchHHhhccCCCCCCCCCceEEEEEeCCC-ccCCCCCCCc
Q 007567 488 PRLQPRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLCSTWMKNSLPMEKSNDCSWAPIFVRQSN-FKLPADAKVP 566 (598)
Q Consensus 488 p~l~pR~YSIsSsp~~~~~~i~itv~~v~~~~~~g~~~~G~~S~~L~~~~~~~~~~~~~~~~i~v~~s~-F~lp~~~~~P 566 (598)
|....|.|||+|+|.. .+.++|+|+. .|..|+||.++.+++ .+.|..+.++ |.++.....|
T Consensus 39 ~~~~~~pySi~s~~~~-~~~l~~~Ik~-----------~G~~S~~L~~l~~G~------~v~i~gP~G~~f~~~~~~~~~ 100 (253)
T cd06221 39 PGVGEAPISISSDPTR-RGPLELTIRR-----------VGRVTEALHELKPGD------TVGLRGPFGNGFPVEEMKGKD 100 (253)
T ss_pred CCCCccceEecCCCCC-CCeEEEEEEe-----------CChhhHHHHcCCCCC------EEEEECCcCCCcccccccCCe
Confidence 4334589999999864 4688988863 378899999876543 5566666677 6665435689
Q ss_pred EEEEeCCCChHhHHHHHHHHhhc
Q 007567 567 IIMIGPGTGLAPFRGSWSRTGTL 589 (598)
Q Consensus 567 iImIg~GTGiAPfr~flqer~~~ 589 (598)
+||||+|||||||++++++..+.
T Consensus 101 iv~IA~G~GitP~ls~l~~~~~~ 123 (253)
T cd06221 101 LLLVAGGLGLAPLRSLINYILDN 123 (253)
T ss_pred EEEEccccchhHHHHHHHHHHhc
Confidence 99999999999999999998865
No 90
>cd06220 DHOD_e_trans_like2 FAD/NAD binding domain in the electron transfer subunit of dihydroorotate dehydrogenase-like proteins. Dihydroorotate dehydrogenases (DHODs) catalyze the only redox reaction in pyrimidine de novo biosynthesis. They catalyze the oxidation of (S)-dihydroorotate to orotate coupled with the reduction of NAD+. In L. lactis, DHOD B (encoded by pyrDa) is co-expressed with pyrK and both gene products are required for full activity, as well as 3 cofactors: FMN, FAD, and an [2Fe-2S] cluster.
Probab=98.84 E-value=5.2e-09 Score=105.41 Aligned_cols=85 Identities=22% Similarity=0.232 Sum_probs=64.0
Q ss_pred hhhHhhhcCCCCCcccccCCCCCCCCCeEEEEEEEEEeeCCCCCcccCcchHHhhccCCCCCCCCCceEEEEEeCCC-cc
Q 007567 480 GVFFAAIVPRLQPRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLCSTWMKNSLPMEKSNDCSWAPIFVRQSN-FK 558 (598)
Q Consensus 480 ~~ll~~i~p~l~pR~YSIsSsp~~~~~~i~itv~~v~~~~~~g~~~~G~~S~~L~~~~~~~~~~~~~~~~i~v~~s~-F~ 558 (598)
++++..-+|....|.|||+|+| +.++|+|+. .|..|+||.++.+++ .+.|..+.++ |.
T Consensus 27 GQ~v~l~~~~~~~~~~Si~s~~----~~l~~~v~~-----------~G~~s~~L~~l~~Gd------~v~i~gP~G~~f~ 85 (233)
T cd06220 27 GQFVMVWVPGVDEIPMSLSYID----GPNSITVKK-----------VGEATSALHDLKEGD------KLGIRGPYGNGFE 85 (233)
T ss_pred CceEEEEeCCCCcceeEEecCC----CeEEEEEEe-----------cChHHHHHHhcCCCC------EEEEECcCCCCcc
Confidence 4454322344456999999998 578887753 388999999876653 4555556676 87
Q ss_pred CCCCCCCcEEEEeCCCChHhHHHHHHHHhh
Q 007567 559 LPADAKVPIIMIGPGTGLAPFRGSWSRTGT 588 (598)
Q Consensus 559 lp~~~~~PiImIg~GTGiAPfr~flqer~~ 588 (598)
++ ..|+||||+|||||||++++++...
T Consensus 86 ~~---~~~~vliAgGtGitP~~sil~~~~~ 112 (233)
T cd06220 86 LV---GGKVLLIGGGIGIAPLAPLAERLKK 112 (233)
T ss_pred CC---CCeEEEEecCcChHHHHHHHHHHHh
Confidence 75 5799999999999999999998764
No 91
>COG0426 FpaA Uncharacterized flavoproteins [Energy production and conversion]
Probab=98.83 E-value=2.8e-08 Score=105.88 Aligned_cols=116 Identities=18% Similarity=0.228 Sum_probs=100.5
Q ss_pred eEEEEEeCCCchHHHHHHHHHHHHHhhcCCceeEEEcCCCCCCcchHHHHhhccCCeEEEEEecCCCCCcchHHHHHHHH
Q 007567 106 KVTIFFGTQTGTAEGFAKALADEARARYDKAIFKVVDIDDYADEEDEYEEKLKKENIVFFFLATYGDGEPTDNAARFYKW 185 (598)
Q Consensus 106 ~v~I~YgSqTGtae~~A~~la~~l~~~~~~~~~~v~dl~~~~~~~~~~~~~l~~~~~vIf~~sTyG~Geppdna~~F~~~ 185 (598)
+|.|+|.|+.|+|+.+|+.|++.+.+.| +.+.++++.+-+. .++.+.+.+.+.+++++||+ ++++++.++.++..
T Consensus 248 ~V~l~Y~smyg~T~~ma~aiaegl~~~g--v~v~~~~~~~~~~--~eI~~~i~~a~~~vvGsPT~-~~~~~p~i~~~l~~ 322 (388)
T COG0426 248 KVDLIYDSMYGNTEKMAQAIAEGLMKEG--VDVEVINLEDADP--SEIVEEILDAKGLVVGSPTI-NGGAHPPIQTALGY 322 (388)
T ss_pred eEEEEEecccCCHHHHHHHHHHHhhhcC--CceEEEEcccCCH--HHHHHHHhhcceEEEecCcc-cCCCCchHHHHHHH
Confidence 8999999999999999999999999887 5578888877644 45667888999999999999 57777778888888
Q ss_pred HHhhcCCCcccCCceEEEEeecCCcchhHhHHHHHHHHHHHhcCCeEeec
Q 007567 186 FTEQKEGGEWLQKLKYGVFGLGNRQYEHFNKIAKVVDEILANQGAKRLVP 235 (598)
Q Consensus 186 L~~~~~~~~~l~~~~yaVFGLGds~Y~~Fn~~~k~ld~~L~~lGA~ri~~ 235 (598)
+... ..+++..+||| +|.|-..+.+.+.++|+++|-+-..+
T Consensus 323 v~~~-----~~~~k~~~vfg----S~GW~g~av~~i~~~l~~~g~~~~~~ 363 (388)
T COG0426 323 VLAL-----APKNKLAGVFG----SYGWSGEAVDLIEEKLKDLGFEFGFD 363 (388)
T ss_pred HHhc-----cCcCceEEEEe----ccCCCCcchHHHHHHHHhcCcEEecc
Confidence 8764 46778899999 79999999999999999999987765
No 92
>PF12724 Flavodoxin_5: Flavodoxin domain
Probab=98.83 E-value=4.4e-08 Score=91.46 Aligned_cols=86 Identities=22% Similarity=0.355 Sum_probs=70.2
Q ss_pred EEEEeCCCchHHHHHHHHHHHHHhhcCCceeEEEcCCCCCCcchHHHHhhccCCeEEEEEecCCCCCcchHHHHHHHHHH
Q 007567 108 TIFFGTQTGTAEGFAKALADEARARYDKAIFKVVDIDDYADEEDEYEEKLKKENIVFFFLATYGDGEPTDNAARFYKWFT 187 (598)
Q Consensus 108 ~I~YgSqTGtae~~A~~la~~l~~~~~~~~~~v~dl~~~~~~~~~~~~~l~~~~~vIf~~sTyG~Geppdna~~F~~~L~ 187 (598)
+|+|.|.||||+++|+.|++.+.+.+ ..+|+.+...+ ..++..++.+||++|+| .|.++..+.+|++.+.
T Consensus 1 LIvY~S~~G~Tk~~A~~ia~~l~~~~-----~~v~~~~~~~~----~~~~~~yD~vi~gspiy-~g~~~~~~~~fi~~~~ 70 (143)
T PF12724_consen 1 LIVYFSKTGNTKKIAEWIAEKLGEEG-----ELVDLEKVEED----EPDLSDYDAVIFGSPIY-AGRIPGEMREFIKKNK 70 (143)
T ss_pred CEEEECCCchHHHHHHHHHHHHhhhc-----cEEEHHhhhhc----ccccccCCEEEEEEEEE-CCcCCHHHHHHHHHHH
Confidence 58999999999999999999998653 45666664211 13678999999999999 6999999999998775
Q ss_pred hhcCCCcccCCceEEEEeecCC
Q 007567 188 EQKEGGEWLQKLKYGVFGLGNR 209 (598)
Q Consensus 188 ~~~~~~~~l~~~~yaVFGLGds 209 (598)
+ .|+++++++|..|-.
T Consensus 71 ~------~l~~k~v~~f~~~~~ 86 (143)
T PF12724_consen 71 D------NLKNKKVALFSVGGS 86 (143)
T ss_pred H------HHcCCcEEEEEEeCC
Confidence 4 478999999998644
No 93
>PTZ00319 NADH-cytochrome B5 reductase; Provisional
Probab=98.81 E-value=8.8e-09 Score=107.94 Aligned_cols=91 Identities=13% Similarity=0.084 Sum_probs=64.7
Q ss_pred CCcccccCCCCCCCCCeEEEEEEEEEeeCCCCCcccCcchHHhhccCCCCCCCCCceEEEEEeCCCccCCCC--------
Q 007567 491 QPRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLCSTWMKNSLPMEKSNDCSWAPIFVRQSNFKLPAD-------- 562 (598)
Q Consensus 491 ~pR~YSIsSsp~~~~~~i~itv~~v~~~~~~g~~~~G~~S~~L~~~~~~~~~~~~~~~~i~v~~s~F~lp~~-------- 562 (598)
..|.||++|+|.. .+.++|+|+.+......-....|.+|+||.++.+++ .+.|..+.++|.++.+
T Consensus 85 ~~R~YS~~s~~~~-~~~i~~~Ik~~~~~~~~~~~~~G~~S~~L~~l~~Gd------~v~i~gP~G~f~~~~~~~~~~~~~ 157 (300)
T PTZ00319 85 VQHSYTPISSDDE-KGYVDFLIKVYFKGVHPSFPNGGRLSQHLYHMKLGD------KIEMRGPVGKFEYLGNGTYTVHKG 157 (300)
T ss_pred EEeeeccCCCccc-CCEEEEEEEEeccCCCCCCCCCCChhhhhhcCCCCC------EEEEEccceeeEecCCcceeeccc
Confidence 3599999999854 578999998762110000123599999998777654 5566666778865422
Q ss_pred -------CCCcEEEEeCCCChHhHHHHHHHHhh
Q 007567 563 -------AKVPIIMIGPGTGLAPFRGSWSRTGT 588 (598)
Q Consensus 563 -------~~~PiImIg~GTGiAPfr~flqer~~ 588 (598)
...|+||||+|||||||++++++...
T Consensus 158 ~~~~~~~~~~~illIAgGtGIaP~~sml~~l~~ 190 (300)
T PTZ00319 158 KGGLKTMHVDAFAMIAGGTGITPMLQIIHAIKK 190 (300)
T ss_pred cccccccccceEEEEecCcccCHHHHHHHHHHh
Confidence 12589999999999999999998764
No 94
>cd06192 DHOD_e_trans_like FAD/NAD binding domain (electron transfer subunit) of dihydroorotate dehydrogenase-like proteins. Dihydroorotate dehydrogenases (DHODs) catalyze the only redox reaction in pyrimidine de novo biosynthesis. They catalyze the oxidation of (S)-dihydroorotate to orotate coupled with the reduction of NAD+. In L. lactis, DHOD B (encoded by pyrDa) is co-expressed with pyrK and both gene products are required for full activity, as well as NAD binding. NAD(P) binding domain of ferredoxin reductase-like proteins catalyze electron transfer between an NAD(P)-binding domain of the alpha/beta class and a discrete (usually N-terminal) domain which vary in orientation with respect to the NAD(P) binding domain. The N-terminal domain may contain a flavin prosthetic group (as in flavoenzymes) or use flavin as a substrate. Ferredoxin is reduced in the final stage of photosystem I. The flavoprotein Ferredoxin-NADP+ reductase transfers electrons from reduced ferredoxin to FAD (formi
Probab=98.80 E-value=1.5e-08 Score=102.56 Aligned_cols=83 Identities=14% Similarity=0.120 Sum_probs=63.9
Q ss_pred CCCCcccccCCCCCCCCCeEEEEEEEEEeeCCCCCcccCcchHHhhccCCCCCCCCCceEEEEEeCCCccCCCCCCCcEE
Q 007567 489 RLQPRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLCSTWMKNSLPMEKSNDCSWAPIFVRQSNFKLPADAKVPII 568 (598)
Q Consensus 489 ~l~pR~YSIsSsp~~~~~~i~itv~~v~~~~~~g~~~~G~~S~~L~~~~~~~~~~~~~~~~i~v~~s~F~lp~~~~~PiI 568 (598)
....|.|||+|+|.. .++++|+|+. .|..|.||.++.+++ .+.|.-+.++|.+..+...+++
T Consensus 40 ~~~~rpySi~s~~~~-~~~l~l~i~~-----------~G~~t~~l~~~~~G~------~l~i~gP~G~~~~~~~~~~~~l 101 (243)
T cd06192 40 GLERIPLSLAGVDPE-EGTISLLVEI-----------RGPKTKLIAELKPGE------KLDVMGPLGNGFEGPKKGGTVL 101 (243)
T ss_pred CceeeeeEeeecCCC-CCEEEEEEEE-----------cCchHHHHHhCCCCC------EEEEEccCCCCCccCCCCCEEE
Confidence 345799999999864 3688887753 378899998877653 4555556677665544468999
Q ss_pred EEeCCCChHhHHHHHHHHhhc
Q 007567 569 MIGPGTGLAPFRGSWSRTGTL 589 (598)
Q Consensus 569 mIg~GTGiAPfr~flqer~~~ 589 (598)
|||+|||||||++++++....
T Consensus 102 liagGtGiap~~~~l~~~~~~ 122 (243)
T cd06192 102 LVAGGIGLAPLLPIAKKLAAN 122 (243)
T ss_pred EEeCcccHHHHHHHHHHHHHC
Confidence 999999999999999987653
No 95
>COG1780 NrdI Protein involved in ribonucleotide reduction [Nucleotide transport and metabolism]
Probab=98.76 E-value=3.8e-08 Score=89.51 Aligned_cols=124 Identities=18% Similarity=0.293 Sum_probs=85.4
Q ss_pred eEEEEEeCCCchHHHHHHHHHHHHHhhcCCceeEEEcCCCCCCcchHHHHhhccCCeEEEEEecCCCC----CcchHHHH
Q 007567 106 KVTIFFGTQTGTAEGFAKALADEARARYDKAIFKVVDIDDYADEEDEYEEKLKKENIVFFFLATYGDG----EPTDNAAR 181 (598)
Q Consensus 106 ~v~I~YgSqTGtae~~A~~la~~l~~~~~~~~~~v~dl~~~~~~~~~~~~~l~~~~~vIf~~sTyG~G----eppdna~~ 181 (598)
.+.|+|.|.|||+..|+++|. + +...+.+...++ .+.-...+|++++|||.| +.|....+
T Consensus 2 ~~~v~f~S~SgNt~RFv~kL~--~----~~~~I~~~~~~~----------~~~v~epyvlitpTyg~G~~~~~Vp~~vi~ 65 (141)
T COG1780 2 MLLVYFSSLSGNTHRFVEKLG--L----PAVRIPLNREED----------PIEVDEPYVLITPTYGGGGTVGAVPKQVIR 65 (141)
T ss_pred ceEEEEEecCccHHHHHHHhC--C----CceecccccccC----------CccCCCCeEEEeccccCCCccCccCHHHHH
Confidence 478999999999999999887 1 111222221111 233455789999999999 88998777
Q ss_pred HHHHHHhhcCCCcccCCceEEEEeecCCcc-hhHhHHHHHHHHHHHhcCCeEeecceeccCCCCchH---HHHHHHHHHH
Q 007567 182 FYKWFTEQKEGGEWLQKLKYGVFGLGNRQY-EHFNKIAKVVDEILANQGAKRLVPVGLGDDDQCIED---DFSAWRELVW 257 (598)
Q Consensus 182 F~~~L~~~~~~~~~l~~~~yaVFGLGds~Y-~~Fn~~~k~ld~~L~~lGA~ri~~~g~gD~~~~~e~---~f~~W~~~l~ 257 (598)
|+..- ....+..+|.|.||++| ..||.+|+.+.+++ |.--++..- -.+..+ .+.+|..++|
T Consensus 66 FLn~~--------~Nr~~~rGViaSGN~NfG~~f~~Ag~~iS~k~---~vPlLy~FE----L~GT~~Dv~~v~~~v~~~~ 130 (141)
T COG1780 66 FLNNE--------HNRALCRGVIASGNRNFGDNFALAGDVISAKC---GVPLLYRFE----LLGTAEDVAAVRKGVTEFW 130 (141)
T ss_pred Hhccc--------cchhheEEEEecCCccHHHHHHHHHHHHHHHh---CCCEEEEEe----ccCCHHHHHHHHHHHHHHH
Confidence 76421 23467789999999999 78999999998765 544444332 234444 4667777777
Q ss_pred HHH
Q 007567 258 PEL 260 (598)
Q Consensus 258 ~~L 260 (598)
+..
T Consensus 131 ~~~ 133 (141)
T COG1780 131 KRA 133 (141)
T ss_pred HhC
Confidence 643
No 96
>cd06186 NOX_Duox_like_FAD_NADP NADPH oxidase (NOX) catalyzes the generation of reactive oxygen species (ROS) such as superoxide and hydrogen peroxide. ROS were originally identified as bactericidal agents in phagocytes, but are now also implicated in cell signaling and metabolism. NOX has a 6-alpha helix heme-binding transmembrane domain fused to a flavoprotein with the nucleotide binding domain located in the cytoplasm. Duox enzymes link a peroxidase domain to the NOX domain via a single transmembrane and EF-hand Ca2+ binding sites. The flavoprotein module has a ferredoxin like FAD/NADPH binding domain. In classical phagocytic NOX2, electron transfer occurs from NADPH to FAD to the heme of cytb to oxygen leading to superoxide formation.
Probab=98.72 E-value=3.3e-08 Score=97.47 Aligned_cols=90 Identities=11% Similarity=0.072 Sum_probs=63.9
Q ss_pred CCCcccccCCCCCCCCCeEEEEEEEEEeeCCCCCcccCcchHHhhccCCCCCCCCCceEEEEEeCCCccCCCCCCCcEEE
Q 007567 490 LQPRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLCSTWMKNSLPMEKSNDCSWAPIFVRQSNFKLPADAKVPIIM 569 (598)
Q Consensus 490 l~pR~YSIsSsp~~~~~~i~itv~~v~~~~~~g~~~~G~~S~~L~~~~~~~~~~~~~~~~i~v~~s~F~lp~~~~~PiIm 569 (598)
.+.|.|||+|+|....+.++|+|+.. .|..+.++.++...........+.|..+.+.|.++.....++||
T Consensus 42 ~~~hpfsias~~~~~~~~i~~~vk~~----------~G~~t~~~~~~~~~~~~~~~~~v~v~GP~G~~~~~~~~~~~~vl 111 (210)
T cd06186 42 WQSHPFTIASSPEDEQDTLSLIIRAK----------KGFTTRLLRKALKSPGGGVSLKVLVEGPYGSSSEDLLSYDNVLL 111 (210)
T ss_pred cccCCcEeeeCCCCCCCEEEEEEEec----------CChHHHHHHHHHhCcCCCceeEEEEECCCCCCccChhhCCeEEE
Confidence 37899999999875347899888642 38888887776521011112344444456777645455689999
Q ss_pred EeCCCChHhHHHHHHHHhhc
Q 007567 570 IGPGTGLAPFRGSWSRTGTL 589 (598)
Q Consensus 570 Ig~GTGiAPfr~flqer~~~ 589 (598)
||+||||||++++|++....
T Consensus 112 iagG~GItp~~s~l~~l~~~ 131 (210)
T cd06186 112 VAGGSGITFVLPILRDLLRR 131 (210)
T ss_pred EeccccHhhhHHHHHHHHhh
Confidence 99999999999999998764
No 97
>cd06193 siderophore_interacting Siderophore interacting proteins share the domain structure of the ferredoxin reductase like family. Siderophores are produced in various bacteria (and some plants) to extract iron from hosts. Binding constants are high, so iron can be pilfered from transferrin and lactoferrin for bacterial uptake, contributing to pathogen virulence. Ferredoxin reductase (FNR), an FAD and NAD(P) binding protein, was intially identified as a chloroplast reductase activity, catalyzing the electron transfer from reduced iron-sulfur protein ferredoxin to NADP+ as the final step in the electron transport mechanism of photosystem I. FNR transfers electrons from reduced ferredoxin to FAD (forming FADH2 via a semiquinone intermediate) and then transfers a hydride ion to convert NADP+ to NADPH. FNR has since been shown to utilize a variety of electron acceptors and donors and has a variety of physiological functions including nitrogen assimilation, dinitrogen fixation, steroid hy
Probab=98.70 E-value=3.4e-08 Score=99.64 Aligned_cols=82 Identities=16% Similarity=0.184 Sum_probs=64.6
Q ss_pred CCcccccCCCCCCCCCeEEEEEEEEEeeCCCCCcccCcchHHhhccCCCCCCCCCceEEEEEeCCCccCCCCCCCcEEEE
Q 007567 491 QPRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLCSTWMKNSLPMEKSNDCSWAPIFVRQSNFKLPADAKVPIIMI 570 (598)
Q Consensus 491 ~pR~YSIsSsp~~~~~~i~itv~~v~~~~~~g~~~~G~~S~~L~~~~~~~~~~~~~~~~i~v~~s~F~lp~~~~~PiImI 570 (598)
..|.|||+|.+.. .++++|+|.+.. ..|..|+||.++.+++ .+.|..+.+.|.++. ...+++||
T Consensus 63 ~~R~YSi~~~~~~-~~~l~~~v~~~~--------~~G~~s~~l~~l~~Gd------~v~v~gP~G~~~~~~-~~~~~vli 126 (235)
T cd06193 63 VMRTYTVRRFDPE-AGELDIDFVLHG--------DEGPASRWAASAQPGD------TLGIAGPGGSFLPPP-DADWYLLA 126 (235)
T ss_pred cCcccceeEEcCC-CCEEEEEEEeCC--------CCCchHHHHhhCCCCC------EEEEECCCCCCCCCC-CcceEEEE
Confidence 4699999998753 478888886532 1389999999887764 566666788998865 45799999
Q ss_pred eCCCChHhHHHHHHHHhh
Q 007567 571 GPGTGLAPFRGSWSRTGT 588 (598)
Q Consensus 571 g~GTGiAPfr~flqer~~ 588 (598)
|.||||||+++++++...
T Consensus 127 a~GtGi~p~~~il~~~~~ 144 (235)
T cd06193 127 GDETALPAIAAILEELPA 144 (235)
T ss_pred eccchHHHHHHHHHhCCC
Confidence 999999999999997543
No 98
>PF03358 FMN_red: NADPH-dependent FMN reductase; InterPro: IPR005025 NADPH-dependent FMN reductase (1.5.1.29 from EC) reduces FMN and also reduces riboflavin and FAD, although more slowly. Members of this entry catalyse the reaction NAD(P)H + FMN = NAD(P)(+) + FMNH(2).; PDB: 3SVL_B 3GFS_F 3GFQ_A 1NNI_1 2GSW_B 3GFR_D 1T0I_B 3D7N_A 2R97_A 3B6K_A ....
Probab=98.68 E-value=3.6e-07 Score=85.62 Aligned_cols=125 Identities=20% Similarity=0.293 Sum_probs=98.2
Q ss_pred ceEEEEEeCCC--chHHHHHHHHHHHHHhhcCCceeEEEcCCCCC---------------CcchHHHHhhccCCeEEEEE
Q 007567 105 QKVTIFFGTQT--GTAEGFAKALADEARARYDKAIFKVVDIDDYA---------------DEEDEYEEKLKKENIVFFFL 167 (598)
Q Consensus 105 ~~v~I~YgSqT--Gtae~~A~~la~~l~~~~~~~~~~v~dl~~~~---------------~~~~~~~~~l~~~~~vIf~~ 167 (598)
|+|+|++||.. |+++.+|+.+++.+++.+ ..++++|+.++. .+-.++.+++.+.+.+||++
T Consensus 1 Mkilii~gS~r~~~~t~~l~~~~~~~l~~~g--~e~~~i~l~~~~~p~~~~~~~~~~~~~d~~~~~~~~l~~aD~iI~~s 78 (152)
T PF03358_consen 1 MKILIINGSPRKNSNTRKLAEAVAEQLEEAG--AEVEVIDLADYPLPCCDGDFECPCYIPDDVQELYDKLKEADGIIFAS 78 (152)
T ss_dssp -EEEEEESSSSTTSHHHHHHHHHHHHHHHTT--EEEEEEECTTSHCHHHHHHHHHTGCTSHHHHHHHHHHHHSSEEEEEE
T ss_pred CEEEEEECcCCCCCHHHHHHHHHHHHHHHcC--CEEEEEeccccchhhcccccccccCCcHHHHHHHhceecCCeEEEee
Confidence 68999999975 999999999999998874 678999999861 11122346778899999999
Q ss_pred ecCCCCCcchHHHHHHHHHHhhcCCCcccCCceEEEEeecCCcchhHhHHHHHHHHHHHhcCCeEeec
Q 007567 168 ATYGDGEPTDNAARFYKWFTEQKEGGEWLQKLKYGVFGLGNRQYEHFNKIAKVVDEILANQGAKRLVP 235 (598)
Q Consensus 168 sTyG~Geppdna~~F~~~L~~~~~~~~~l~~~~yaVFGLGds~Y~~Fn~~~k~ld~~L~~lGA~ri~~ 235 (598)
|+| .|.+|.-++.|++|+.. .....+.++.+++++.|.+.+.... +...+...|..+|+.-+-.
T Consensus 79 P~y-~~~~s~~lK~~lD~~~~--~~~~~~~~K~~~~i~~~g~~~g~~~-~~~~l~~~~~~~~~~~~~~ 142 (152)
T PF03358_consen 79 PVY-NGSVSGQLKNFLDRLSC--WFRRALRGKPVAIIAVGGGRRGGLR-ALEQLRQILDYLGMIVVPS 142 (152)
T ss_dssp EEB-TTBE-HHHHHHHHTHHH--THTTTTTTSEEEEEEEESSSSTTHH-HHHHHHHHHHHTTBEEECC
T ss_pred cEE-cCcCChhhhHHHHHhcc--ccccccCCCEEEEEEEecCCcHHHH-HHHHHHHHHHHCCCEEcCC
Confidence 999 89999999999999973 1124689999999998866554433 6678888888899876644
No 99
>PRK06222 ferredoxin-NADP(+) reductase subunit alpha; Reviewed
Probab=98.63 E-value=7.5e-08 Score=99.96 Aligned_cols=80 Identities=11% Similarity=0.046 Sum_probs=61.7
Q ss_pred CCcccccCCCCCCCCCeEEEEEEEEEeeCCCCCcccCcchHHhhccCCCCCCCCCceE-EEEEeCCCccCCCCCCCcEEE
Q 007567 491 QPRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLCSTWMKNSLPMEKSNDCSWA-PIFVRQSNFKLPADAKVPIIM 569 (598)
Q Consensus 491 ~pR~YSIsSsp~~~~~~i~itv~~v~~~~~~g~~~~G~~S~~L~~~~~~~~~~~~~~~-~i~v~~s~F~lp~~~~~PiIm 569 (598)
..|.|||+|++.. .+.++|+|+. .|..|.||.++.+++ .+ .|.-+.++|..+.+ ..|+||
T Consensus 43 ~~rpySias~~~~-~~~i~l~vk~-----------~G~~T~~L~~l~~Gd------~v~~i~GP~G~~~~~~~-~~~~ll 103 (281)
T PRK06222 43 ERIPLTIADYDRE-KGTITIVFQA-----------VGKSTRKLAELKEGD------SILDVVGPLGKPSEIEK-FGTVVC 103 (281)
T ss_pred CceeeEeeEEcCC-CCEEEEEEEe-----------CCcHHHHHhcCCCCC------EEeeEEcCCCCCcccCC-CCeEEE
Confidence 3589999998754 4688888764 388899999887754 45 46666788765433 579999
Q ss_pred EeCCCChHhHHHHHHHHhhc
Q 007567 570 IGPGTGLAPFRGSWSRTGTL 589 (598)
Q Consensus 570 Ig~GTGiAPfr~flqer~~~ 589 (598)
||+|+||||+++++++....
T Consensus 104 IaGGiGiaPl~~l~~~l~~~ 123 (281)
T PRK06222 104 VGGGVGIAPVYPIAKALKEA 123 (281)
T ss_pred EeCcCcHHHHHHHHHHHHHC
Confidence 99999999999999986643
No 100
>cd06219 DHOD_e_trans_like1 FAD/NAD binding domain in the electron transfer subunit of dihydroorotate dehydrogenase-like proteins. Dihydroorotate dehydrogenases (DHODs) catalyze the only redox reaction in pyrimidine de novo biosynthesis. They catalyze the oxidation of (S)-dihydroorotate to orotate coupled with the reduction of NAD+. In L. lactis, DHOD B (encoded by pyrDa) is co-expressed with pyrK and both gene products are required for full activity, as well as NAD binding. NAD(P) binding domain of ferredoxin reductase-like proteins catalyze electron transfer between an NAD(P)-binding domain of the alpha/beta class and a discrete (usually N-terminal) domain which vary in orientation with respect to the NAD(P) binding domain. The N-terminal domain may contain a flavin prosthetic group, as in flavoenzymes, or use flavin as a substrate. Ferredoxin is reduced in the final stage of photosystem I. The flavoprotein Ferredoxin-NADP+ reductase transfers electrons from reduced ferredoxin to FAD,
Probab=98.63 E-value=8e-08 Score=97.83 Aligned_cols=80 Identities=10% Similarity=0.040 Sum_probs=60.5
Q ss_pred CCcccccCCCCCCCCCeEEEEEEEEEeeCCCCCcccCcchHHhhccCCCCCCCCCceE-EEEEeCCCccCCCCCCCcEEE
Q 007567 491 QPRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLCSTWMKNSLPMEKSNDCSWA-PIFVRQSNFKLPADAKVPIIM 569 (598)
Q Consensus 491 ~pR~YSIsSsp~~~~~~i~itv~~v~~~~~~g~~~~G~~S~~L~~~~~~~~~~~~~~~-~i~v~~s~F~lp~~~~~PiIm 569 (598)
..|.|||+|.|.. .++++|+|+. .|..|.||.++.+++ .+ .|.-+.++|.+.. ...|+||
T Consensus 42 ~~~pySi~s~~~~-~~~~~~~vk~-----------~G~~t~~l~~l~~G~------~v~~i~gP~G~~~~~~-~~~~~ll 102 (248)
T cd06219 42 ERIPLTIADWDPE-KGTITIVVQV-----------VGKSTRELATLEEGD------KIHDVVGPLGKPSEIE-NYGTVVF 102 (248)
T ss_pred CccceEeEEEcCC-CCEEEEEEEe-----------CCchHHHHHhcCCCC------EeeeeecCCCCCeecC-CCCeEEE
Confidence 4689999998754 3688888753 377899998877653 44 3555667876543 3579999
Q ss_pred EeCCCChHhHHHHHHHHhhc
Q 007567 570 IGPGTGLAPFRGSWSRTGTL 589 (598)
Q Consensus 570 Ig~GTGiAPfr~flqer~~~ 589 (598)
||+||||||+++++++....
T Consensus 103 iagG~GiaP~~~~l~~~~~~ 122 (248)
T cd06219 103 VGGGVGIAPIYPIAKALKEA 122 (248)
T ss_pred EeCcccHHHHHHHHHHHHHc
Confidence 99999999999999986543
No 101
>COG0543 UbiB 2-polyprenylphenol hydroxylase and related flavodoxin oxidoreductases [Coenzyme metabolism / Energy production and conversion]
Probab=98.58 E-value=1.3e-07 Score=96.68 Aligned_cols=98 Identities=19% Similarity=0.200 Sum_probs=77.6
Q ss_pred CChhhhHhhhcCCCCCcccccCCCCCCCCCeEEEEEEEEEeeCCCCCcccCcchHHhhccCCCCCCCCCceEEEEEeCCC
Q 007567 477 PPLGVFFAAIVPRLQPRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLCSTWMKNSLPMEKSNDCSWAPIFVRQSN 556 (598)
Q Consensus 477 ~pl~~ll~~i~p~l~pR~YSIsSsp~~~~~~i~itv~~v~~~~~~g~~~~G~~S~~L~~~~~~~~~~~~~~~~i~v~~s~ 556 (598)
...++|+...+|....|.|||||.+.. .+.++|++++. ..|..|.++..+.+++ .+.+..+.++
T Consensus 36 ~~pGQfv~l~~~~~~~~P~si~~~~~~-~g~~~l~i~~~---------~~G~~T~~i~~~k~gd------~i~v~GP~G~ 99 (252)
T COG0543 36 FKPGQFVMLRVPGGVRRPYSLASAPDD-KGELELHIRVY---------EVGKVTKYIFGLKEGD------KIRVRGPLGN 99 (252)
T ss_pred cCCCcEEEEEeCCCcEEEeeeccCCCc-CCcEEEEEEEE---------eCChHHHHHhhccCCC------EEEEEcCCCC
Confidence 455667655667788999999999875 45666666554 3699999999987654 4566667888
Q ss_pred ccCCCCCCCcEEEEeCCCChHhHHHHHHHHhhcc
Q 007567 557 FKLPADAKVPIIMIGPGTGLAPFRGSWSRTGTLS 590 (598)
Q Consensus 557 F~lp~~~~~PiImIg~GTGiAPfr~flqer~~~~ 590 (598)
+.+..+...|+++||+|||+||+++.+++....+
T Consensus 100 ~~~~~~~~~~vlliagGtG~aPl~~i~~~~~~~~ 133 (252)
T COG0543 100 GFLREKIGKPVLLIAGGTGIAPLYAIAKELKEKG 133 (252)
T ss_pred CccccccCCcEEEEecccCHhHHHHHHHHHHhcC
Confidence 8877777888999999999999999999987644
No 102
>PRK05802 hypothetical protein; Provisional
Probab=98.57 E-value=1.2e-07 Score=100.23 Aligned_cols=82 Identities=13% Similarity=0.015 Sum_probs=61.9
Q ss_pred CCcccccCCCCCCCCCeEEEEEEEEEeeCCCCCcccCcchHHhhccCCCCCCCCCceEEEEEeC--CCccCC---CCCCC
Q 007567 491 QPRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLCSTWMKNSLPMEKSNDCSWAPIFVRQ--SNFKLP---ADAKV 565 (598)
Q Consensus 491 ~pR~YSIsSsp~~~~~~i~itv~~v~~~~~~g~~~~G~~S~~L~~~~~~~~~~~~~~~~i~v~~--s~F~lp---~~~~~ 565 (598)
..|.|||+|+|.. .+.++|+|++ .|..|.||.++.+++ .+.|.-+. |.|.++ .....
T Consensus 112 ~~rP~SI~~~~~~-~g~l~l~ik~-----------~G~~T~~L~~l~~Gd------~l~v~GP~GnG~F~l~~~~~~~~~ 173 (320)
T PRK05802 112 FDVPISIMEADTE-ENIIKVAIEI-----------RGVKTKKIAKLNKGD------EILLRGPYWNGILGLKNIKSTKNG 173 (320)
T ss_pred eEEeeEecccCCC-CCEEEEEEEe-----------cChhHHHHhcCCCCC------EEEEeCCCCcCcCCcccccccCCC
Confidence 3589999999864 4789988864 488899999887764 44444454 447664 33457
Q ss_pred cEEEEeCCCChHhHHHHHHHHhhcc
Q 007567 566 PIIMIGPGTGLAPFRGSWSRTGTLS 590 (598)
Q Consensus 566 PiImIg~GTGiAPfr~flqer~~~~ 590 (598)
++++||+|+||||+++++++....+
T Consensus 174 ~~llIaGGiGIaPl~~l~~~l~~~~ 198 (320)
T PRK05802 174 KSLVIARGIGQAPGVPVIKKLYSNG 198 (320)
T ss_pred eEEEEEeEEeHHHHHHHHHHHHHcC
Confidence 9999999999999999999886543
No 103
>PF12641 Flavodoxin_3: Flavodoxin domain
Probab=98.57 E-value=2.5e-07 Score=88.20 Aligned_cols=96 Identities=25% Similarity=0.422 Sum_probs=73.3
Q ss_pred EEEEeCCCchHHHHHHHHHHHHHhhcCCceeEEEcCCCCCCcchHHHHhhccCCeEEEEEecCCCCCcchHHHHHHHHHH
Q 007567 108 TIFFGTQTGTAEGFAKALADEARARYDKAIFKVVDIDDYADEEDEYEEKLKKENIVFFFLATYGDGEPTDNAARFYKWFT 187 (598)
Q Consensus 108 ~I~YgSqTGtae~~A~~la~~l~~~~~~~~~~v~dl~~~~~~~~~~~~~l~~~~~vIf~~sTyG~Geppdna~~F~~~L~ 187 (598)
+|+|.|.||||+++|+.|++.+.. ..++++++... .+.++++++++.++| .|.+++.+++|++.
T Consensus 1 lIvYsS~TGNTkkvA~aI~~~l~~------~~~~~~~~~~~-------~~~~yD~i~lG~w~d-~G~~d~~~~~fl~~-- 64 (160)
T PF12641_consen 1 LIVYSSRTGNTKKVAEAIAEALGA------KDIVSVEEPPE-------DLEDYDLIFLGFWID-KGTPDKDMKEFLKK-- 64 (160)
T ss_pred CEEEECCCChHHHHHHHHHHHCCC------ceeEecccccc-------CCCCCCEEEEEcCcc-CCCCCHHHHHHHHH--
Confidence 489999999999999999998754 25667776552 267889999999999 69999999999765
Q ss_pred hhcCCCcccCCceEEEEeecCC--cchhHhHHHHHHHHHHHh
Q 007567 188 EQKEGGEWLQKLKYGVFGLGNR--QYEHFNKIAKVVDEILAN 227 (598)
Q Consensus 188 ~~~~~~~~l~~~~yaVFGLGds--~Y~~Fn~~~k~ld~~L~~ 227 (598)
|+++++++||..-. .-+|+..+.+.+.+.+.+
T Consensus 65 --------l~~KkV~lF~T~G~~~~s~~~~~~~~~~~~~~~~ 98 (160)
T PF12641_consen 65 --------LKGKKVALFGTAGAGPDSEYAKKILKNVEALLPK 98 (160)
T ss_pred --------ccCCeEEEEEecCCCCchHHHHHHHHHHHHhhcc
Confidence 45788999996211 125677777766666654
No 104
>COG2871 NqrF Na+-transporting NADH:ubiquinone oxidoreductase, subunit NqrF [Energy production and conversion]
Probab=98.55 E-value=8.5e-08 Score=96.88 Aligned_cols=88 Identities=22% Similarity=0.282 Sum_probs=73.3
Q ss_pred CcccccCCCCCCCCCeEEEEEEEEEeeCCCCCcccCcchHHhhccCCCCCCCCCceEEEEEeCCCccCCCCCCCcEEEEe
Q 007567 492 PRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLCSTWMKNSLPMEKSNDCSWAPIFVRQSNFKLPADAKVPIIMIG 571 (598)
Q Consensus 492 pR~YSIsSsp~~~~~~i~itv~~v~~~~~~g~~~~G~~S~~L~~~~~~~~~~~~~~~~i~v~~s~F~lp~~~~~PiImIg 571 (598)
-|.||+||-|... ..|.+.|++...+...+..+.|+||+|+.+++|++ ++.|..+.+.|..- +.++|+|+||
T Consensus 211 ~rAYSmAsYPeE~-giI~~NvRIAtPPp~~~~~PpG~mSSyi~sLKpGD------KvtisGPfGEfFaK-dtdaemvFig 282 (410)
T COG2871 211 IRAYSMASYPEEK-GIIKLNVRIATPPPRNPDAPPGQMSSYIWSLKPGD------KVTISGPFGEFFAK-DTDAEMVFIG 282 (410)
T ss_pred HHHhhhhcChhhc-CeEEEEEEeccCCCCCCCCCccceeeeEEeecCCC------eEEEeccchhhhhc-cCCCceEEEe
Confidence 4899999999875 58888888765444556789999999999999975 67888888888754 5689999999
Q ss_pred CCCChHhHHHHHHHHh
Q 007567 572 PGTGLAPFRGSWSRTG 587 (598)
Q Consensus 572 ~GTGiAPfr~flqer~ 587 (598)
+|.|.||+|+-+-+..
T Consensus 283 GGAGmapmRSHIfDqL 298 (410)
T COG2871 283 GGAGMAPMRSHIFDQL 298 (410)
T ss_pred cCcCcCchHHHHHHHH
Confidence 9999999999887654
No 105
>PLN02252 nitrate reductase [NADPH]
Probab=98.50 E-value=2.9e-07 Score=108.86 Aligned_cols=92 Identities=14% Similarity=0.129 Sum_probs=65.1
Q ss_pred CCcccccCCCCCCCCCeEEEEEEEEEeeCCCCCcccCcchHHhhccCCCCCCCCCceEEEEEeCCC--------ccCCCC
Q 007567 491 QPRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLCSTWMKNSLPMEKSNDCSWAPIFVRQSN--------FKLPAD 562 (598)
Q Consensus 491 ~pR~YSIsSsp~~~~~~i~itv~~v~~~~~~g~~~~G~~S~~L~~~~~~~~~~~~~~~~i~v~~s~--------F~lp~~ 562 (598)
..|.|||+|++.. .+.++|+|+++...........|.+|+||.++.+++ .+.|.-+.|. |.++..
T Consensus 682 ~~R~YSpaS~~~~-~g~lel~VK~~~~~~~~~~p~gG~~S~~L~~L~vGd------~V~V~GP~G~f~y~g~G~f~l~~~ 754 (888)
T PLN02252 682 CMRAYTPTSSDDE-VGHFELVIKVYFKNVHPKFPNGGLMSQYLDSLPIGD------TIDVKGPLGHIEYAGRGSFLVNGK 754 (888)
T ss_pred EEeeeEecccCCC-CCEEEEEEEEEeccccCccCCCCchhhHHhcCCCCC------EEEEecCccceeecccceeeeccc
Confidence 3699999999865 468999998762111111124699999998877754 4445444455 455433
Q ss_pred --CCCcEEEEeCCCChHhHHHHHHHHhhc
Q 007567 563 --AKVPIIMIGPGTGLAPFRGSWSRTGTL 589 (598)
Q Consensus 563 --~~~PiImIg~GTGiAPfr~flqer~~~ 589 (598)
..++++|||+|||||||+++|++....
T Consensus 755 ~~~~~~vvmIAGGsGITPi~silr~ll~~ 783 (888)
T PLN02252 755 PKFAKKLAMLAGGTGITPMYQVIQAILRD 783 (888)
T ss_pred cccCceEEEEecceehhHHHHHHHHHHhc
Confidence 247999999999999999999987643
No 106
>PTZ00306 NADH-dependent fumarate reductase; Provisional
Probab=98.35 E-value=7.3e-07 Score=109.15 Aligned_cols=80 Identities=20% Similarity=0.246 Sum_probs=60.8
Q ss_pred CcccccCCCCCCCCCeEEEEEEEEEeeCCCCCcccCcchHHhhccCCCCCCCCCceEEEEEeC----------CCccCCC
Q 007567 492 PRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLCSTWMKNSLPMEKSNDCSWAPIFVRQ----------SNFKLPA 561 (598)
Q Consensus 492 pR~YSIsSsp~~~~~~i~itv~~v~~~~~~g~~~~G~~S~~L~~~~~~~~~~~~~~~~i~v~~----------s~F~lp~ 561 (598)
-|+|||+|.|.. ++.++|+|+. ..|..|+||.++.+++ .+.|..+. +.|.++.
T Consensus 966 ~R~YS~~S~p~~-~~~i~l~Vr~----------~~G~~S~~L~~l~~Gd------~v~v~gp~G~~~~~~p~~~~f~~~~ 1028 (1167)
T PTZ00306 966 IGYYSPITLPDD-LGVISILARG----------DKGTLKEWISALRPGD------SVEMKACGGLRIERRPADKQFVFRG 1028 (1167)
T ss_pred EEEeccCCCCCC-CCeEEEEEEc----------CCChhHHHHhhCCCCC------EEEEeCCcCccccccCccceeeecc
Confidence 499999999963 5678887742 3689999998887764 34443311 2466766
Q ss_pred CCCCcEEEEeCCCChHhHHHHHHHHhh
Q 007567 562 DAKVPIIMIGPGTGLAPFRGSWSRTGT 588 (598)
Q Consensus 562 ~~~~PiImIg~GTGiAPfr~flqer~~ 588 (598)
+..+|+||||+|||||||+++|++...
T Consensus 1029 ~~~~~ivlIAGGtGItP~~sml~~~l~ 1055 (1167)
T PTZ00306 1029 HVIRKLALIAGGTGVAPMLQIIRAALK 1055 (1167)
T ss_pred CCCceEEEEECCccHhHHHHHHHHHHh
Confidence 667899999999999999999997664
No 107
>COG4635 HemG Flavodoxin [Energy production and conversion / Coenzyme metabolism]
Probab=98.32 E-value=1.3e-06 Score=81.63 Aligned_cols=111 Identities=16% Similarity=0.167 Sum_probs=85.6
Q ss_pred ceEEEEEeCCCchHHHHHHHHHHHHHhhcCCceeEEEcCCCCCCcchHHHHhhccCCeEEEEEecCCCCCcchHHHHHHH
Q 007567 105 QKVTIFFGTQTGTAEGFAKALADEARARYDKAIFKVVDIDDYADEEDEYEEKLKKENIVFFFLATYGDGEPTDNAARFYK 184 (598)
Q Consensus 105 ~~v~I~YgSqTGtae~~A~~la~~l~~~~~~~~~~v~dl~~~~~~~~~~~~~l~~~~~vIf~~sTyG~Geppdna~~F~~ 184 (598)
++++|+|+|.+|+|.++|+.||.+|.++| ..+++.|+..... -++..++.+|++.|-| .|........|++
T Consensus 1 Mk~LIlYstr~GqT~kIA~~iA~~L~e~g--~qvdi~dl~~~~~------~~l~~ydavVIgAsI~-~~h~~~~~~~Fv~ 71 (175)
T COG4635 1 MKTLILYSTRDGQTRKIAEYIASHLRESG--IQVDIQDLHAVEE------PALEDYDAVVIGASIR-YGHFHEAVQSFVK 71 (175)
T ss_pred CceEEEEecCCCcHHHHHHHHHHHhhhcC--Ceeeeeehhhhhc------cChhhCceEEEecchh-hhhhHHHHHHHHH
Confidence 57999999999999999999999999887 4567777765431 2578899999999999 8999999999988
Q ss_pred HHHhhcCCCcccCCceEEEEeecCCcchhH---hHHHHHHHHHHHhcCCe
Q 007567 185 WFTEQKEGGEWLQKLKYGVFGLGNRQYEHF---NKIAKVVDEILANQGAK 231 (598)
Q Consensus 185 ~L~~~~~~~~~l~~~~yaVFGLGds~Y~~F---n~~~k~ld~~L~~lGA~ 231 (598)
.-.+ .|++++.|+|.++ -.|..+ -.+-..+++.|.+--.+
T Consensus 72 k~~e------~L~~kP~A~f~vn-l~a~k~k~~~e~~~yv~kfl~~~~Wq 114 (175)
T COG4635 72 KHAE------ALSTKPSAFFSVN-LTARKEKRTPETNSYVRKFLMKSPWQ 114 (175)
T ss_pred HHHH------HHhcCCceEEEee-hhhcccccCchHHHHHHHHHhcCCCc
Confidence 7665 4889999999875 234333 33444666666664333
No 108
>PF12682 Flavodoxin_4: Flavodoxin; PDB: 3EDO_B 3KLB_A.
Probab=98.28 E-value=4e-06 Score=79.69 Aligned_cols=132 Identities=17% Similarity=0.337 Sum_probs=75.7
Q ss_pred eEEEEEeCCCchHHHHHHHHHHHHHhhcCCceeEEEcCCCCCC---c------ch--HH------------HHhhccCCe
Q 007567 106 KVTIFFGTQTGTAEGFAKALADEARARYDKAIFKVVDIDDYAD---E------ED--EY------------EEKLKKENI 162 (598)
Q Consensus 106 ~v~I~YgSqTGtae~~A~~la~~l~~~~~~~~~~v~dl~~~~~---~------~~--~~------------~~~l~~~~~ 162 (598)
+++|+|-|+||||+.+|+.|++.+.. ..+++...+.|.. + .. |. ..++.+++.
T Consensus 1 K~LVvYyS~tGnT~~vA~~Ia~~~ga----di~eI~~~~~Y~~~~~~y~~~~~~~~~e~~~~~~~P~i~~~~~d~~~YD~ 76 (156)
T PF12682_consen 1 KTLVVYYSRTGNTKKVAEKIAEKTGA----DIFEIEPVKPYPSDDLDYRKCISRAKREIKDNNERPEIKPQIPDLSDYDT 76 (156)
T ss_dssp -EEEEE--SSSHHHHHHHHHHHCCT-----EEEE-BBSTTSSTGGCSCCHCCCHHHHHHTTTT----BC---S-GGG-SE
T ss_pred CEEEEEECCCchHHHHHHHHHHHHCC----CEEEEEeCCCCCcchhhHHHHHHHHHHHHhcccccccccccccCcccCCE
Confidence 57999999999999999999986643 2234444444443 0 00 00 125578899
Q ss_pred EEEEEecCCCCCcchHHHHHHHHHHhhcCCCcccCCceEEEEee-cCCcchhHhHHHHHHHHHHHhcCCeEeecceeccC
Q 007567 163 VFFFLATYGDGEPTDNAARFYKWFTEQKEGGEWLQKLKYGVFGL-GNRQYEHFNKIAKVVDEILANQGAKRLVPVGLGDD 241 (598)
Q Consensus 163 vIf~~sTyG~Geppdna~~F~~~L~~~~~~~~~l~~~~yaVFGL-Gds~Y~~Fn~~~k~ld~~L~~lGA~ri~~~g~gD~ 241 (598)
++++.|+| .|.+|.-+..|++.. .++|++++.|-. |.+ .+....+.+.+.+. +|+-.-.+.. ..
T Consensus 77 I~lG~PvW-~~~~~~pv~tFL~~~--------~~~gK~v~~F~T~ggs---~~~~~~~~l~~~~~--~a~i~~g~~~-~~ 141 (156)
T PF12682_consen 77 IFLGTPVW-WGTPPPPVRTFLEQY--------DFSGKTVIPFCTSGGS---GFGNSLEDLKKLCP--GATILEGLAI-NR 141 (156)
T ss_dssp EEEEEEEE-TTEE-CHHHHHHHCT--------TTTTSEEEEEEE-SS-----CHHHHHHHHHH-T--TSEE---EE----
T ss_pred EEEechHH-cCCCCHHHHHHHHhc--------CCCCCcEEEEEeeCCC---ChhHHHHHHHHHCC--CCEeecCeEE-eC
Confidence 99999999 899999988887532 488999999974 222 23444455554442 3443222222 11
Q ss_pred CCCchHHHHHHHHHH
Q 007567 242 DQCIEDDFSAWRELV 256 (598)
Q Consensus 242 ~~~~e~~f~~W~~~l 256 (598)
+.-.++++.+|.++|
T Consensus 142 ~~~~~~~i~~Wl~~i 156 (156)
T PF12682_consen 142 GSVSEEEIKEWLKKI 156 (156)
T ss_dssp S---HHHHHHHHHHT
T ss_pred CCcCHHHHHHHHHhC
Confidence 111578999998764
No 109
>PLN02631 ferric-chelate reductase
Probab=98.21 E-value=3.9e-06 Score=96.58 Aligned_cols=86 Identities=16% Similarity=0.188 Sum_probs=63.5
Q ss_pred CCCcccccCCCCCCCCCeEEEEEEEEEeeCCCCCcccCcchHHhhccCCCCCCCCCceEEEEE--eCCCccCCCCCCCcE
Q 007567 490 LQPRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLCSTWMKNSLPMEKSNDCSWAPIFV--RQSNFKLPADAKVPI 567 (598)
Q Consensus 490 l~pR~YSIsSsp~~~~~~i~itv~~v~~~~~~g~~~~G~~S~~L~~~~~~~~~~~~~~~~i~v--~~s~F~lp~~~~~Pi 567 (598)
.+.|.|||+|+|...++.++++|+. .|-.|++|.+....+ .+.+++.+ +.|.|..+.....++
T Consensus 351 ~q~HPFSIaSsp~~~~~~L~~~IK~-----------~Gg~T~~L~~~l~~~----g~~i~V~VeGPYG~~~~~~~~~~~v 415 (699)
T PLN02631 351 LQWHPFTITSSSNLEKDTLSVVIRR-----------QGSWTQKLYTHLSSS----IDSLEVSTEGPYGPNSFDVSRHNSL 415 (699)
T ss_pred cceEEEEEeccCCCCCCEEEEEEEc-----------CChHHHHHHHhhhcC----CCeeEEEEECCCCCCCCCcCCCCcE
Confidence 5679999999986556788888863 477888887744211 12344444 567776665555789
Q ss_pred EEEeCCCChHhHHHHHHHHhhcc
Q 007567 568 IMIGPGTGLAPFRGSWSRTGTLS 590 (598)
Q Consensus 568 ImIg~GTGiAPfr~flqer~~~~ 590 (598)
||||+|+||+|+++++++..+..
T Consensus 416 VlIAGGsGITP~lSiL~~ll~~~ 438 (699)
T PLN02631 416 ILVSGGSGITPFISVIRELIFQS 438 (699)
T ss_pred EEEEeCcChHhHHHHHHHHHhcc
Confidence 99999999999999999987553
No 110
>KOG0534 consensus NADH-cytochrome b-5 reductase [Coenzyme transport and metabolism; Energy production and conversion]
Probab=98.20 E-value=3.7e-06 Score=86.91 Aligned_cols=83 Identities=17% Similarity=0.077 Sum_probs=67.2
Q ss_pred CCcccccCCCCCCCCCeEEEEEEEEEeeCCCCCcccCcchHHhhccCCCCCCCCCceEEEEEeCCCccCCCCCCCcEEEE
Q 007567 491 QPRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLCSTWMKNSLPMEKSNDCSWAPIFVRQSNFKLPADAKVPIIMI 570 (598)
Q Consensus 491 ~pR~YSIsSsp~~~~~~i~itv~~v~~~~~~g~~~~G~~S~~L~~~~~~~~~~~~~~~~i~v~~s~F~lp~~~~~PiImI 570 (598)
--|.||=-|++.. .+.+++.|++. .+|.+|.||.++..++ .+.+..+.++|.+.....+-+.||
T Consensus 99 vvRpYTPvs~~~~-~g~~~l~VK~Y---------~~G~mS~~l~~LkiGd------~ve~rGP~G~~~~~~~~~~~l~mi 162 (286)
T KOG0534|consen 99 VVRPYTPVSLDDD-KGYFDLVVKVY---------PKGKMSQHLDSLKIGD------TVEFRGPIGEFKYDPQKAKHLGMI 162 (286)
T ss_pred EEEecCCccCccc-cceEEEEEEec---------cCCcccHHHhcCCCCC------EEEEecCccceEecCCCcceEEEE
Confidence 3589998888765 46888877653 3599999999998864 455555678998887777899999
Q ss_pred eCCCChHhHHHHHHHHhhc
Q 007567 571 GPGTGLAPFRGSWSRTGTL 589 (598)
Q Consensus 571 g~GTGiAPfr~flqer~~~ 589 (598)
|+||||+|+.-.+|+....
T Consensus 163 AgGtGItPmlqii~~il~~ 181 (286)
T KOG0534|consen 163 AGGTGITPMLQLIRAILKD 181 (286)
T ss_pred ecccchhhHHHHHHHHhcC
Confidence 9999999999999998743
No 111
>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional
Probab=98.19 E-value=3.1e-06 Score=99.49 Aligned_cols=80 Identities=15% Similarity=0.113 Sum_probs=63.2
Q ss_pred CCcccccCCCCCCCCCeEEEEEEEEEeeCCCCCcccCcchHHhhccCCCCCCCCCceE-EEEEeCCCccCCCCCCCcEEE
Q 007567 491 QPRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLCSTWMKNSLPMEKSNDCSWA-PIFVRQSNFKLPADAKVPIIM 569 (598)
Q Consensus 491 ~pR~YSIsSsp~~~~~~i~itv~~v~~~~~~g~~~~G~~S~~L~~~~~~~~~~~~~~~-~i~v~~s~F~lp~~~~~PiIm 569 (598)
..|.|||+|.+.. .+.++|+|+++ |..|.||.++.+++ .+ .|..+.|+|.++.. ..+++|
T Consensus 43 ~~rp~Si~~~~~~-~g~i~~~vk~v-----------G~~T~~L~~l~~Gd------~v~~v~GP~G~~~~~~~-~~~~ll 103 (752)
T PRK12778 43 ERIPLTIADADPE-KGTITLVIQEV-----------GLSTTKLCELNEGD------YITDVVGPLGNPSEIEN-YGTVVC 103 (752)
T ss_pred CeeEEEeeeeCCC-CCEEEEEEEEc-----------CchHHHHhcCCCCC------EeCeEeCCCCCCccCCC-CCeEEE
Confidence 3589999999864 46899888643 78899999887764 45 46666788876543 479999
Q ss_pred EeCCCChHhHHHHHHHHhhc
Q 007567 570 IGPGTGLAPFRGSWSRTGTL 589 (598)
Q Consensus 570 Ig~GTGiAPfr~flqer~~~ 589 (598)
||+|+||||+++++++....
T Consensus 104 vaGG~GiaPl~~l~~~l~~~ 123 (752)
T PRK12778 104 AGGGVGVAPMLPIVKALKAA 123 (752)
T ss_pred EECCEeHHHHHHHHHHHHHC
Confidence 99999999999999987654
No 112
>PLN02292 ferric-chelate reductase
Probab=98.17 E-value=4.9e-06 Score=95.91 Aligned_cols=89 Identities=19% Similarity=0.184 Sum_probs=62.2
Q ss_pred CCCcccccCCCCCCCCCeEEEEEEEEEeeCCCCCcccCcchHHhhccCCCCCCCCCceEEEEEeCCCccCCCCCCCcEEE
Q 007567 490 LQPRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLCSTWMKNSLPMEKSNDCSWAPIFVRQSNFKLPADAKVPIIM 569 (598)
Q Consensus 490 l~pR~YSIsSsp~~~~~~i~itv~~v~~~~~~g~~~~G~~S~~L~~~~~~~~~~~~~~~~i~v~~s~F~lp~~~~~PiIm 569 (598)
.+.|.|||+|+|..+++.++++|+. .|-.|++|.+....++.....++.+..+.|.+..+.....+++|
T Consensus 368 ~q~HPFTIaSsp~~~~~~l~l~IK~-----------~G~~T~~L~~~l~~gd~i~~~~V~VeGPYG~~~~~~~~~~~vvl 436 (702)
T PLN02292 368 LQWHPFTITSSSKLEPEKLSVMIKS-----------QGKWSTKLYHMLSSSDQIDRLAVSVEGPYGPASTDFLRHESLVM 436 (702)
T ss_pred cceeeeEeeccCCCCCCEEEEEEEc-----------CCchhHHHHHhCCCCCccccceEEEECCccCCccccccCCcEEE
Confidence 5789999999986556788887763 36678888876433321111123344456776544444578999
Q ss_pred EeCCCChHhHHHHHHHHhhc
Q 007567 570 IGPGTGLAPFRGSWSRTGTL 589 (598)
Q Consensus 570 Ig~GTGiAPfr~flqer~~~ 589 (598)
||+|+||+|+.+++++..+.
T Consensus 437 IAGGiGITP~lsil~~L~~~ 456 (702)
T PLN02292 437 VSGGSGITPFISIIRDLIYT 456 (702)
T ss_pred EEeccCHHHHHHHHHHHHhc
Confidence 99999999999999988654
No 113
>PRK10569 NAD(P)H-dependent FMN reductase; Provisional
Probab=98.15 E-value=0.0001 Score=72.42 Aligned_cols=120 Identities=11% Similarity=0.162 Sum_probs=95.5
Q ss_pred ceEEEEEeCC--CchHHHHHHHHHHHHHhhcCCceeEEEcCCCCCCcc-----------hHHHHhhccCCeEEEEEecCC
Q 007567 105 QKVTIFFGTQ--TGTAEGFAKALADEARARYDKAIFKVVDIDDYADEE-----------DEYEEKLKKENIVFFFLATYG 171 (598)
Q Consensus 105 ~~v~I~YgSq--TGtae~~A~~la~~l~~~~~~~~~~v~dl~~~~~~~-----------~~~~~~l~~~~~vIf~~sTyG 171 (598)
++|+++.||- .+++..+++.+.+.+.+.+ ..++++|+.++..++ .++.+.+.+.+.+||++|.|
T Consensus 1 mkIl~I~GSpr~~S~t~~l~~~~~~~l~~~g--~ev~~idL~~l~~~~~~~~~~~~~~~~~~~~~i~~AD~iIi~tP~Y- 77 (191)
T PRK10569 1 MRVITLAGSPRFPSRSSALLEYAREWLNGLG--VEVYHWNLQNFAPEDLLYARFDSPALKTFTEQLAQADGLIVATPVY- 77 (191)
T ss_pred CEEEEEEcCCCCCChHHHHHHHHHHHHHhCC--CEEEEEEccCCChHHHHhccCCCHHHHHHHHHHHHCCEEEEECCcc-
Confidence 4799999997 5889999999999998765 567788887765422 12235667889999999999
Q ss_pred CCCcchHHHHHHHHHHhhcCCCcccCCceEEEEeecCCcchhHhHHHHHHHHHHHhcCCeEe
Q 007567 172 DGEPTDNAARFYKWFTEQKEGGEWLQKLKYGVFGLGNRQYEHFNKIAKVVDEILANQGAKRL 233 (598)
Q Consensus 172 ~Geppdna~~F~~~L~~~~~~~~~l~~~~yaVFGLGds~Y~~Fn~~~k~ld~~L~~lGA~ri 233 (598)
.|..|.-.+.|++|+.. ..+.++.+++++.| ....+.-..--.+...|..+||..+
T Consensus 78 ~~s~pg~LKn~iD~l~~-----~~l~~K~v~iiat~-G~~~~~~~~~~~lr~~l~~l~a~~~ 133 (191)
T PRK10569 78 KASFSGALKTLLDLLPE-----RALEHKVVLPLATG-GSVAHMLAVDYALKPVLSALKAQEI 133 (191)
T ss_pred CCCCCHHHHHHHHhCCh-----hhhCCCEEEEEEec-CCchhHHHHHHHHHHHHHHcCCeec
Confidence 99999999999999943 35899999999998 5566665555677788889999864
No 114
>PLN02844 oxidoreductase/ferric-chelate reductase
Probab=98.06 E-value=9.7e-06 Score=93.77 Aligned_cols=89 Identities=17% Similarity=0.202 Sum_probs=58.7
Q ss_pred CCCcccccCCCCCCCCCeEEEEEEEEEeeCCCCCcccCcchHHhhccCC----CCC-CCCCceEEEEEeCCCccCCCCCC
Q 007567 490 LQPRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLCSTWMKNSLP----MEK-SNDCSWAPIFVRQSNFKLPADAK 564 (598)
Q Consensus 490 l~pR~YSIsSsp~~~~~~i~itv~~v~~~~~~g~~~~G~~S~~L~~~~~----~~~-~~~~~~~~i~v~~s~F~lp~~~~ 564 (598)
.+.|.|||+|+|..+++.++++|+.. .|. |+.|.+... .+. ...+..+.|.-+.|.|.++....
T Consensus 355 ~q~HPFSIaS~p~~~~~~l~~~IK~~----------gG~-T~~L~~~i~~~l~~g~~~~~~~~v~VeGPYG~~s~~~~~~ 423 (722)
T PLN02844 355 FQWHPFSITSSSNIDDHTMSVIIKCE----------GGW-TNSLYNKIQAELDSETNQMNCIPVAIEGPYGPASVDFLRY 423 (722)
T ss_pred eeEEEEEeecCCCCCCCeEEEEEEeC----------CCc-hHHHHHHHHhhccCCCCcccceEEEEECCccCCCCCccCC
Confidence 46799999999865567888877542 343 344433221 111 01112334444568887665445
Q ss_pred CcEEEEeCCCChHhHHHHHHHHhhc
Q 007567 565 VPIIMIGPGTGLAPFRGSWSRTGTL 589 (598)
Q Consensus 565 ~PiImIg~GTGiAPfr~flqer~~~ 589 (598)
.+++|||+|||||||++++++....
T Consensus 424 ~~lVLIAGGiGITPfLSiLrdl~~~ 448 (722)
T PLN02844 424 DSLLLVAGGIGITPFLSILKEIASQ 448 (722)
T ss_pred CeEEEEEcCcCHHHHHHHHHHHHhc
Confidence 7899999999999999999998764
No 115
>PRK00170 azoreductase; Reviewed
Probab=98.04 E-value=0.00025 Score=69.55 Aligned_cols=156 Identities=9% Similarity=-0.016 Sum_probs=103.9
Q ss_pred CceEEEEEeCC--C-chHHHHHHHHHHHHHhhcCCceeEEEcCCCCCCc---------------------------chHH
Q 007567 104 KQKVTIFFGTQ--T-GTAEGFAKALADEARARYDKAIFKVVDIDDYADE---------------------------EDEY 153 (598)
Q Consensus 104 ~~~v~I~YgSq--T-Gtae~~A~~la~~l~~~~~~~~~~v~dl~~~~~~---------------------------~~~~ 153 (598)
|++|+|++||- . |++..+|+.+.+.+++++++..++++||.+.+.. ..++
T Consensus 1 Mmkil~i~gSpr~~~s~s~~l~~~~~~~l~~~~~~~~v~~~dL~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~l 80 (201)
T PRK00170 1 MSKVLVIKSSILGDYSQSMQLGDAFIEAYKEAHPDDEVTVRDLAAEPIPVLDGEVVGALGKSAETLTPRQQEAVALSDEL 80 (201)
T ss_pred CCeEEEEecCCCCCCcHHHHHHHHHHHHHHHhCCCCeEEEEECCCCCCCCCCHHHHHhhcCCcccCCHHHHHHHHHHHHH
Confidence 47899999996 3 8899999999999998754567888888665421 0112
Q ss_pred HHhhccCCeEEEEEecCCCCCcchHHHHHHHHHHhhc--------CCCcccCCceEEEEeecCCcc--hhHhHHHHHHHH
Q 007567 154 EEKLKKENIVFFFLATYGDGEPTDNAARFYKWFTEQK--------EGGEWLQKLKYGVFGLGNRQY--EHFNKIAKVVDE 223 (598)
Q Consensus 154 ~~~l~~~~~vIf~~sTyG~Geppdna~~F~~~L~~~~--------~~~~~l~~~~yaVFGLGds~Y--~~Fn~~~k~ld~ 223 (598)
.+++...+.+||++|.| .+..|.-.+.|++++.... .+...++++++.++......+ ..+..+...+..
T Consensus 81 ~~~i~~AD~iV~~sP~y-~~~~pa~LK~~iDrv~~~~~~~~~~~~~~~~~l~~K~~~~i~t~g~~~~~~~~~~~~~~~~~ 159 (201)
T PRK00170 81 LEEFLAADKIVIAAPMY-NFSIPTQLKAYIDLIARAGKTFRYTENGPVGLVTGKKALLITSRGGIHKDGPTDMGVPYLKT 159 (201)
T ss_pred HHHHHHCCEEEEeeccc-ccCCcHHHHHHHHhheeCCceEEecCCCCccCcCCcEEEEEEeCCCCCCCCCcchHHHHHHH
Confidence 34577889999999999 8999999999999985311 112357899999888633222 222445566777
Q ss_pred HHHhcCCeEeecceeccCCCCchHHHHHHHHHHHHHHH
Q 007567 224 ILANQGAKRLVPVGLGDDDQCIEDDFSAWRELVWPELD 261 (598)
Q Consensus 224 ~L~~lGA~ri~~~g~gD~~~~~e~~f~~W~~~l~~~L~ 261 (598)
.|.-+|.+.+..+.....+. ..+.-.+|.++....+.
T Consensus 160 ~~~~~G~~~~~~~~~~g~~~-~~~~~~~~~~~a~~~~~ 196 (201)
T PRK00170 160 FLGFIGITDVEFVFAEGHNY-GPEKAAKIISAAKAAAD 196 (201)
T ss_pred HHHhcCCCceEEEEEecccC-CchHHHHHHHHHHHHHH
Confidence 88888988554443222221 22334455555444443
No 116
>PRK06934 flavodoxin; Provisional
Probab=98.01 E-value=0.00013 Score=73.07 Aligned_cols=135 Identities=12% Similarity=0.169 Sum_probs=82.1
Q ss_pred CceEEEEEeCCCchHHHHHHHHHHHHHhhcCCceeEEEcCCCCCCc----------------chHH---HHhhccCCeEE
Q 007567 104 KQKVTIFFGTQTGTAEGFAKALADEARARYDKAIFKVVDIDDYADE----------------EDEY---EEKLKKENIVF 164 (598)
Q Consensus 104 ~~~v~I~YgSqTGtae~~A~~la~~l~~~~~~~~~~v~dl~~~~~~----------------~~~~---~~~l~~~~~vI 164 (598)
...++|.=|+.||||+.+|+.|++++..- -.++...+.|..+ .+++ ..++.+++.++
T Consensus 59 ~~s~~~~~~~~~GnTk~vAe~Ia~~~gaD----l~eI~~~~~Y~~~yd~~~~~a~~E~~~~~~P~L~~~~~dl~~YD~I~ 134 (221)
T PRK06934 59 GASILQKNGEVLGSTQYVAQIIQEETGGD----LFRIETVKPYPRQHDPLLKYAEQEVKEGGRPEMREKIQNLADYDQIF 134 (221)
T ss_pred cccccccCCCCCCHHHHHHHHHHHHHCCC----EEEEEEccccCCCCchhhhHHHHhhhcCCCHHHHHHHHhHHhCCEEE
Confidence 34456666667799999999999887532 1333334433221 1111 24678899999
Q ss_pred EEEecCCCCCcchHHHHHHHHHHhhcCCCcccCCceEEEEee-cCCcchhHhHHHHHHHHHHHhcCCeEeeccee--ccC
Q 007567 165 FFLATYGDGEPTDNAARFYKWFTEQKEGGEWLQKLKYGVFGL-GNRQYEHFNKIAKVVDEILANQGAKRLVPVGL--GDD 241 (598)
Q Consensus 165 f~~sTyG~Geppdna~~F~~~L~~~~~~~~~l~~~~yaVFGL-Gds~Y~~Fn~~~k~ld~~L~~lGA~ri~~~g~--gD~ 241 (598)
++.|.| -|.+|.-...|++.. .++|++++.|.. |-+ .+....+.+.+.+. +|+.+.+-.. +++
T Consensus 135 IG~PIW-wg~~P~~V~tFLe~~--------d~~GK~I~pF~T~ggs---g~g~s~~~i~~l~~--~a~~v~~Gl~i~~~~ 200 (221)
T PRK06934 135 IGYPIW-WYKMPMVMYSFFEQH--------DFSGKTLIPFTTHGGS---RFSDSLREIKRLQP--NAQLVTQGLAISRND 200 (221)
T ss_pred EEcchh-hccccHHHHHHHHhc--------CCCCCEEEEEEecCCC---CccchHHHHHHHcC--CcceeccceeeecCc
Confidence 999999 799999988886433 478999999984 222 23333344433322 3422322111 332
Q ss_pred C--CCchHHHHHHHHHH
Q 007567 242 D--QCIEDDFSAWRELV 256 (598)
Q Consensus 242 ~--~~~e~~f~~W~~~l 256 (598)
. ...++++..|.+++
T Consensus 201 ~~~~~~~~~I~~Wl~~l 217 (221)
T PRK06934 201 VTDDDTPKEIINWLNTL 217 (221)
T ss_pred ccccchHHHHHHHHHHc
Confidence 1 13478899998764
No 117
>PRK01355 azoreductase; Reviewed
Probab=98.00 E-value=0.00034 Score=69.07 Aligned_cols=159 Identities=12% Similarity=0.102 Sum_probs=109.4
Q ss_pred CceEEEEEeCCC----chHHHHHHHHHHHHHhhcCCceeEEEcCCCCCCc-----------------chHHHHhhccCCe
Q 007567 104 KQKVTIFFGTQT----GTAEGFAKALADEARARYDKAIFKVVDIDDYADE-----------------EDEYEEKLKKENI 162 (598)
Q Consensus 104 ~~~v~I~YgSqT----Gtae~~A~~la~~l~~~~~~~~~~v~dl~~~~~~-----------------~~~~~~~l~~~~~ 162 (598)
|++|+|+.||-. |++..+|+.+.+.+++.+.+..++++||.+.... ..++.+++...+.
T Consensus 1 M~kIliI~gSpr~~~~s~s~~l~~~~~~~~~~~~~~~~v~~~dL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~AD~ 80 (199)
T PRK01355 1 MSKVLVIKGSMVAKEKSFSSALTDKFVEEYKKVNPNDEIIILDLNETKVGSVTLTSENFKTFFKEEVSDKYINQLKSVDK 80 (199)
T ss_pred CCeEEEEECCCCCCCCcHHHHHHHHHHHHHHHhCCCCeEEEEeCCCCCCCcccCCHHHHHhhcCchhHHHHHHHHHhCCE
Confidence 578999999984 8899999999999988665567888888765431 1123356778899
Q ss_pred EEEEEecCCCCCcchHHHHHHHHHHhhc--------CC---CcccCCceEEEEeecCCcc--hhHhHHHHHHHHHHHhcC
Q 007567 163 VFFFLATYGDGEPTDNAARFYKWFTEQK--------EG---GEWLQKLKYGVFGLGNRQY--EHFNKIAKVVDEILANQG 229 (598)
Q Consensus 163 vIf~~sTyG~Geppdna~~F~~~L~~~~--------~~---~~~l~~~~yaVFGLGds~Y--~~Fn~~~k~ld~~L~~lG 229 (598)
+||++|.| .+.+|.-.+.|++++.... .. ...+.+++..|+-...... ..|......+...+.-+|
T Consensus 81 iV~~sP~y-~~~ipa~LK~~iDrv~~~~~~f~y~~~~~~~~~gll~~kk~~vi~T~G~~~~~~~~~~~~~~l~~~~~~~G 159 (199)
T PRK01355 81 VVISCPMT-NFNVPATLKNYLDHIAVANKTFSYKYSKKGDAIGLLDHLKVQILTTQGAPLGWYPWGSHTNYLEGTWEFLG 159 (199)
T ss_pred EEEEcCcc-ccCChHHHHHHHHHHHhcCCceEecccCCCCcccccCCCEEEEEEecCCCCCccCccchHHHHHHHHHhcC
Confidence 99999999 9999999999999986421 00 1247788887765543222 124556677888888899
Q ss_pred CeEeecceeccCCC-Cch-HHHHHHHHHHHHHHHhh
Q 007567 230 AKRLVPVGLGDDDQ-CIE-DDFSAWRELVWPELDNL 263 (598)
Q Consensus 230 A~ri~~~g~gD~~~-~~e-~~f~~W~~~l~~~L~~~ 263 (598)
.+.+.....+..+. .++ +....|.+.-.+.+.+.
T Consensus 160 ~~~~~~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 195 (199)
T PRK01355 160 AKVVDSILLAGTKVEPLSNKTPKEIVEEFDKEIIEK 195 (199)
T ss_pred CCceeEEEEecccCCccccccHHHHHHHHHHHHHHH
Confidence 98766555433322 111 22677776665555443
No 118
>TIGR03567 FMN_reduc_SsuE FMN reductase, SsuE family. Members of this protein family use NAD(P)H to reduce FMN and regenerate FMNH2. Members include the homodimeric, NAD(P)H-dependent enzyme SsuE from Escherichia coli, which serves as a partner to an FMNH2-dependent alkanesulfonate monooxygenase. It is induced by sulfate starvation. The NADH-dependent enzyme MsuE from Pseudomonas aeruginosa is outside the scope of this model (see model TIGR03566).
Probab=97.98 E-value=0.00027 Score=68.00 Aligned_cols=121 Identities=12% Similarity=0.204 Sum_probs=91.7
Q ss_pred eEEEEEeCC--CchHHHHHHHHHHHHHhhcCCceeEEEcCCCCCCcc-----------hHHHHhhccCCeEEEEEecCCC
Q 007567 106 KVTIFFGTQ--TGTAEGFAKALADEARARYDKAIFKVVDIDDYADEE-----------DEYEEKLKKENIVFFFLATYGD 172 (598)
Q Consensus 106 ~v~I~YgSq--TGtae~~A~~la~~l~~~~~~~~~~v~dl~~~~~~~-----------~~~~~~l~~~~~vIf~~sTyG~ 172 (598)
+|+++.||- .|++.++++.+.+.+.+.+ ..++++|+.++...+ .++.+++...+.+||++|.| .
T Consensus 1 kil~I~gS~r~~S~t~~l~~~~~~~l~~~~--~~~~~idl~~l~~~~~~~~~~~~~~~~~l~~~i~~AD~iI~~sP~Y-~ 77 (171)
T TIGR03567 1 RVLTLSGSPSTPSRSSALLRHVREALQEQG--VEVDHLSVRDLPAEDLLFARFDSPAIKAATAQVAQADGVVVATPVY-K 77 (171)
T ss_pred CEEEEECCCCCCChHHHHHHHHHHHHHHCC--CeEEEEEecCCChHHhhhcCCCCHHHHHHHHHHHHCCEEEEECCcc-c
Confidence 578999994 7899999999999998765 346777776644311 12234667889999999999 9
Q ss_pred CCcchHHHHHHHHHHhhcCCCcccCCceEEEEeecCCcchhHhHHHHHHHHHHHhcCCeEeec
Q 007567 173 GEPTDNAARFYKWFTEQKEGGEWLQKLKYGVFGLGNRQYEHFNKIAKVVDEILANQGAKRLVP 235 (598)
Q Consensus 173 Geppdna~~F~~~L~~~~~~~~~l~~~~yaVFGLGds~Y~~Fn~~~k~ld~~L~~lGA~ri~~ 235 (598)
|.+|.-.+.|++|+.. ..+.++..++++.| ..+.++...-..+...|..+|+..+.+
T Consensus 78 ~sip~~LK~~iD~~~~-----~~l~~K~v~~~~~g-g~~~~~~~~~~~l~~~l~~l~~~~~~~ 134 (171)
T TIGR03567 78 ASYSGVLKALLDLLPQ-----RALRGKVVLPIATG-GSIAHLLAIDYALKPVLSALGARHILP 134 (171)
T ss_pred CCCCHHHHHHHHhCCh-----hhhCCCEEEEEEcC-CchhHHHHHHHHHHHHHHHcCCccccc
Confidence 9999999999999853 25889999998887 456665554456888999999965433
No 119
>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional
Probab=97.85 E-value=3.5e-05 Score=92.41 Aligned_cols=81 Identities=12% Similarity=0.053 Sum_probs=60.0
Q ss_pred CCcccccCCCCCCCCCeEEEEEEEEEeeCCCCCcccCcchHHhhccCCCCCCCCCceEE-EEEeCCCcc-CCC-CCCCcE
Q 007567 491 QPRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLCSTWMKNSLPMEKSNDCSWAP-IFVRQSNFK-LPA-DAKVPI 567 (598)
Q Consensus 491 ~pR~YSIsSsp~~~~~~i~itv~~v~~~~~~g~~~~G~~S~~L~~~~~~~~~~~~~~~~-i~v~~s~F~-lp~-~~~~Pi 567 (598)
..|.|||+|.+.. .+.++|+|+.+ |..|.+|.++.+++ .+. |..+.|+|. ++. ....++
T Consensus 692 e~rP~SIas~~~~-~g~i~l~Vk~v-----------G~~T~~L~~lk~Gd------~l~~I~GPlG~~f~~~~~~~~~~v 753 (944)
T PRK12779 692 ELIPLTLADWDAE-KGTIDLVVQGM-----------GTSSLEINRMAIGD------AFSGIAGPLGRASELHRYEGNQTV 753 (944)
T ss_pred CEEeEEccCCCCC-CCEEEEEEEee-----------ccHHHHHhcCCCcC------EEeeeecCCCCCcCCccccCCCcE
Confidence 3589999998754 46788887643 77788888887764 342 555678764 443 224799
Q ss_pred EEEeCCCChHhHHHHHHHHhhc
Q 007567 568 IMIGPGTGLAPFRGSWSRTGTL 589 (598)
Q Consensus 568 ImIg~GTGiAPfr~flqer~~~ 589 (598)
+|||+|+||||+++++++....
T Consensus 754 llIAGGiGIAPl~sl~r~l~~~ 775 (944)
T PRK12779 754 VFCAGGVGLPPVYPIMRAHLRL 775 (944)
T ss_pred EEEEccEeHHHHHHHHHHHHHC
Confidence 9999999999999999987654
No 120
>TIGR03566 FMN_reduc_MsuE FMN reductase, MsuE subfamily. Members of this protein family use NAD(P)H to reduce FMN and regenerate FMNH2. Members include the NADH-dependent enzyme MsuE from Pseudomonas aeruginosa, which serves as a partner to an FMNH2-dependent alkanesulfonate monooxygenase. The NADP-dependent enzyme from E. coli is outside the scope of this model.
Probab=97.85 E-value=0.0005 Score=66.29 Aligned_cols=120 Identities=16% Similarity=0.168 Sum_probs=88.9
Q ss_pred eEEEEEeCC--CchHHHHHHHHHHHHHhhcCCceeEEEcCCCCC------------C-cchHHHHhhccCCeEEEEEecC
Q 007567 106 KVTIFFGTQ--TGTAEGFAKALADEARARYDKAIFKVVDIDDYA------------D-EEDEYEEKLKKENIVFFFLATY 170 (598)
Q Consensus 106 ~v~I~YgSq--TGtae~~A~~la~~l~~~~~~~~~~v~dl~~~~------------~-~~~~~~~~l~~~~~vIf~~sTy 170 (598)
+|+++.||. .|++..+|+.+.+.+.+..+ ..++++|+.+++ . +-.++.+++...+.+||++|.|
T Consensus 1 kIl~i~GS~r~~s~t~~l~~~~~~~l~~~~g-~ev~~idL~~~~~~~~~~~~~~~~~~~~~~~~~~i~~AD~iIi~tP~Y 79 (174)
T TIGR03566 1 KVVGVSGSLTRPSRTLALVEALVAELAARLG-ISPRTIDLADLAPSLGGALWRSQLPPDAERILQAIESADLLVVGSPVY 79 (174)
T ss_pred CEEEEECCCCCCChHHHHHHHHHHHHHHhcC-CeEEEEEhhhcChhhccccccCCCCHHHHHHHHHHHHCCEEEEECCcC
Confidence 589999997 59999999999988765432 456777776652 1 1123446778899999999999
Q ss_pred CCCCcchHHHHHHHHHHhhcCCCcccCCceEEEEeecCCcchhHhHHHHHHHHHHHhcCCeEe
Q 007567 171 GDGEPTDNAARFYKWFTEQKEGGEWLQKLKYGVFGLGNRQYEHFNKIAKVVDEILANQGAKRL 233 (598)
Q Consensus 171 G~Geppdna~~F~~~L~~~~~~~~~l~~~~yaVFGLGds~Y~~Fn~~~k~ld~~L~~lGA~ri 233 (598)
.|.+|.-.+.|++|+.. ..+.+++.++++.|.... +...+-..+...|..+|+..+
T Consensus 80 -~~s~~~~LKn~lD~~~~-----~~l~~K~~~~v~~~g~~~-~~~~~~~~l~~~~~~l~~~~~ 135 (174)
T TIGR03566 80 -RGSYTGLFKHLFDLVDP-----NALIGKPVLLAATGGSER-HALMVEHQLRPLFGFFQALTL 135 (174)
T ss_pred -cCcCcHHHHHHHHhcCH-----hHhCCCEEEEEEecCCcc-chHHHHHHHHHHHHHhCcccc
Confidence 89999999999999853 258899999999875433 222234456677778887754
No 121
>PRK09739 hypothetical protein; Provisional
Probab=97.82 E-value=0.00075 Score=66.46 Aligned_cols=157 Identities=12% Similarity=0.079 Sum_probs=104.1
Q ss_pred CceEEEEEeCC--CchHHHHHHHHHHHHHhhcCCceeEEEcCCCCCC---------------------cchHHHHhhccC
Q 007567 104 KQKVTIFFGTQ--TGTAEGFAKALADEARARYDKAIFKVVDIDDYAD---------------------EEDEYEEKLKKE 160 (598)
Q Consensus 104 ~~~v~I~YgSq--TGtae~~A~~la~~l~~~~~~~~~~v~dl~~~~~---------------------~~~~~~~~l~~~ 160 (598)
+++|+|++||- .|++..+++.+.+.+++.+ ..++++||.+... +-.++.+++...
T Consensus 3 mmkiliI~~sp~~~s~s~~l~~~~~~~~~~~g--~~v~~~dL~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~A 80 (199)
T PRK09739 3 SMRIYLVWAHPRHDSLTAKVAEAIHQRAQERG--HQVEELDLYRSGFDPVLTPEDEPDWKNPDKRYSPEVHQLYSELLEH 80 (199)
T ss_pred CceEEEEEcCCCCCCcHHHHHHHHHHHHHHCC--CEEEEEEhhhhCCCCCCCHHHhhhhcccCCCCCHHHHHHHHHHHhC
Confidence 67899999987 5788999999999998875 4577888765321 112344677889
Q ss_pred CeEEEEEecCCCCCcchHHHHHHHHHHhhcC---CCcccCCceEEEEeecCCcchhHhH------HHHHHH-HHHHhcCC
Q 007567 161 NIVFFFLATYGDGEPTDNAARFYKWFTEQKE---GGEWLQKLKYGVFGLGNRQYEHFNK------IAKVVD-EILANQGA 230 (598)
Q Consensus 161 ~~vIf~~sTyG~Geppdna~~F~~~L~~~~~---~~~~l~~~~yaVFGLGds~Y~~Fn~------~~k~ld-~~L~~lGA 230 (598)
+.+||++|-| .+.+|.-.+.|++++..... ....|.+++..++......|++|.. .-..+. ..+.-+|.
T Consensus 81 D~iV~~~P~y-~~~~Pa~LK~~iD~v~~~g~~y~~~~~l~~k~~~~v~t~g~~~~~~~~~~~~~~~~~~l~~~~~~~~G~ 159 (199)
T PRK09739 81 DALVFVFPLW-WYSFPAMLKGYIDRVWNNGLAYGDGHKLPFNKVRWVALVGGSKESFVKRGWEKNMSDYLNVGMASYLGI 159 (199)
T ss_pred CEEEEECchh-hhcchHHHHHHHHHHccccccccCCccCCCCeEEEEEecCCChHHhcccccccHHHHHHHhhhhhcCCc
Confidence 9999999999 89999999999998753210 1134778888887764344444322 223344 34445677
Q ss_pred eEeecceeccCC-----CCchHHHHHHHHHHHHHHHhh
Q 007567 231 KRLVPVGLGDDD-----QCIEDDFSAWRELVWPELDNL 263 (598)
Q Consensus 231 ~ri~~~g~gD~~-----~~~e~~f~~W~~~l~~~L~~~ 263 (598)
+.+-....+... ....+.+++|.+++.....++
T Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~ 197 (199)
T PRK09739 160 EDSDVTFLYNTLVFDGEELHASHYQSLLSQAREMVDAL 197 (199)
T ss_pred cccceEEEecccccccccCCHHHHHHHHHHHHHHHHHh
Confidence 654322222221 334667889988876665443
No 122
>PF02525 Flavodoxin_2: Flavodoxin-like fold; InterPro: IPR003680 This family consists of a domain with a flavodoxin-like fold. The family includes bacterial and eukaryotic NAD(P)H dehydrogenase (quinone) 1.6.99.2 from EC. These enzymes catalyse the NAD(P)H-dependent two-electron reductions of quinones and protect cells against damage by free radicals and reactive oxygen species []. This enzyme uses a FAD cofactor. The equation for this reaction is NAD(P)H + acceptor = NAD(P)(+) + reduced acceptor. This enzyme is also involved in the bioactivation of prodrugs used in chemotherapy []. The family also includes acyl carrier protein phosphodiesterase 3.1.4.14 from EC. This enzyme converts holo-ACP to apo-ACP by hydrolytic cleavage of the phosphopantetheine residue from ACP []. This family is related to FMN_red IPR005025 from INTERPRO and Flavodoxin_1 IPR008254 from INTERPRO.; GO: 0009055 electron carrier activity, 0016491 oxidoreductase activity, 0050662 coenzyme binding; PDB: 1T5B_B 1DXQ_B 2B3D_A 2Z9D_B 2Z9C_A 2Z98_A 2D5I_A 2Z9B_A 1TIK_A 1V4B_A ....
Probab=97.76 E-value=0.0013 Score=64.66 Aligned_cols=154 Identities=14% Similarity=0.095 Sum_probs=109.0
Q ss_pred ceEEEEEeCCCc---hHHHHHHHHHHHHHhhcCCceeEEEcCCCC--------------CC-----cchH-HH-HhhccC
Q 007567 105 QKVTIFFGTQTG---TAEGFAKALADEARARYDKAIFKVVDIDDY--------------AD-----EEDE-YE-EKLKKE 160 (598)
Q Consensus 105 ~~v~I~YgSqTG---tae~~A~~la~~l~~~~~~~~~~v~dl~~~--------------~~-----~~~~-~~-~~l~~~ 160 (598)
|+|+|++||-.+ ++..+++.+.+.++++++ ..++++||.+. .. .+.. -. +.+...
T Consensus 1 mkiLvI~asp~~~~S~s~~l~~~~~~~~~~~~~-~~v~~~dL~~~~~p~l~~~~~~~~~~~~~~~~~d~~~~~~~~l~~A 79 (199)
T PF02525_consen 1 MKILVINASPRPEGSFSRALADAFLEGLQEAGP-HEVEIRDLYEEFLPVLDSECFAAFRTYEQGPAIDVQSEQIEELLWA 79 (199)
T ss_dssp EEEEEEE--SSTTTSHHHHHHHHHHHHHHHHTT-SEEEEEETTTTT--SSSHHHHHHHHHHHHTHHHHHHHHHHHHHHHS
T ss_pred CEEEEEEcCCCCccCHHHHHHHHHHHHHHHcCC-CEEEEEECcccccccchHHHHHhhhhhhhhhhhhHHHHHHHHHHHc
Confidence 689999999987 589999999999999875 66889999874 00 1111 12 567788
Q ss_pred CeEEEEEecCCCCCcchHHHHHHHHHHhhcC----------CCcccCCceEEEEe-ecCCcc--h-------hHhHHHHH
Q 007567 161 NIVFFFLATYGDGEPTDNAARFYKWFTEQKE----------GGEWLQKLKYGVFG-LGNRQY--E-------HFNKIAKV 220 (598)
Q Consensus 161 ~~vIf~~sTyG~Geppdna~~F~~~L~~~~~----------~~~~l~~~~yaVFG-LGds~Y--~-------~Fn~~~k~ 220 (598)
+.+||+.|.| .+.+|.-.+.|++.+-.... ....|+|+++.++- .|...| . .+......
T Consensus 80 D~iV~~~Pl~-~~~~Pa~lK~~iD~v~~~g~~~~~~~g~~~~~~~L~gKk~~~i~t~g~~~~~~~~~g~~~~~~~~~~~~ 158 (199)
T PF02525_consen 80 DHIVFAFPLY-WFSMPAQLKGWIDRVFTPGFTFYTPDGKYPSGGLLKGKKALLIVTSGGPEYSYGPPGIPGRSMDHLLPY 158 (199)
T ss_dssp SEEEEEEEEB-TTBC-HHHHHHHHHHSHTTTSEEETTSTTCGEESTTTSEEEEEEEESSSGGGGSTTSSTTSHHHHHHHH
T ss_pred CcceEeccce-ecccChhHHHHHHHhCcCCeeeeccccccccccccccccEEEEEcCCCChHHhcccCCCCCChhhhHHH
Confidence 9999999999 89999999999998733111 12468888887776 454432 2 34556666
Q ss_pred HHHHHHhcCCeEeecceeccCC-CCchHHHHHHHHHHHHHH
Q 007567 221 VDEILANQGAKRLVPVGLGDDD-QCIEDDFSAWRELVWPEL 260 (598)
Q Consensus 221 ld~~L~~lGA~ri~~~g~gD~~-~~~e~~f~~W~~~l~~~L 260 (598)
+...++-+|++.+-....++-. ...++.+++|++++-+.|
T Consensus 159 ~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 199 (199)
T PF02525_consen 159 LRGILKFCGIKDVESFSFEGVDNPDREEALEKALERAAEHL 199 (199)
T ss_dssp HHHHHHHTTEEEEEEEEEESTTTCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhCCCceeeEEEEeCCCCCChHHHHHHHHHHHHhhC
Confidence 7888889999998777665543 223778888888775543
No 123
>PRK13556 azoreductase; Provisional
Probab=97.68 E-value=0.0026 Score=63.16 Aligned_cols=156 Identities=10% Similarity=0.074 Sum_probs=104.8
Q ss_pred CceEEEEEeCC----CchHHHHHHHHHHHHHhhcCCceeEEEcCCCCCC-----------------------------cc
Q 007567 104 KQKVTIFFGTQ----TGTAEGFAKALADEARARYDKAIFKVVDIDDYAD-----------------------------EE 150 (598)
Q Consensus 104 ~~~v~I~YgSq----TGtae~~A~~la~~l~~~~~~~~~~v~dl~~~~~-----------------------------~~ 150 (598)
|++|+|++||- .+++..+++.+.+.+++.+++..++++||.+.+. +.
T Consensus 1 m~kiL~I~~spr~~~~S~s~~l~~~~~~~~~~~~~~~~V~~~DL~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (208)
T PRK13556 1 MSKVLFVKANNRPAEQAVSVKLYEAFLASYKEAHPNDTVVELDLYKEELPYVGVDMINGTFKAGKGFELTEEEAKAVAVA 80 (208)
T ss_pred CCeEEEEeCCCCCCCCcHHHHHHHHHHHHHHHhCCCCeEEEEeCCCCCCCCCCHHHHHhhccccccccCCHHHHHHHHHH
Confidence 57899999995 4789999999999998876556788888864211 00
Q ss_pred hHHHHhhccCCeEEEEEecCCCCCcchHHHHHHHHHHhhc--------CCCcccCCceEEEEeecCCcc-----hhHhHH
Q 007567 151 DEYEEKLKKENIVFFFLATYGDGEPTDNAARFYKWFTEQK--------EGGEWLQKLKYGVFGLGNRQY-----EHFNKI 217 (598)
Q Consensus 151 ~~~~~~l~~~~~vIf~~sTyG~Geppdna~~F~~~L~~~~--------~~~~~l~~~~yaVFGLGds~Y-----~~Fn~~ 217 (598)
.++.+.+...+.+||++|-| ++.+|.-.+.+++|+.... .....+++++..|+...-..| +.+..+
T Consensus 81 ~~~~~~l~~AD~iVi~~P~y-n~~~Pa~LK~~iD~v~~~g~tf~~~~~g~~gll~~K~~~vi~tsGg~~~~~~~~~~~~~ 159 (208)
T PRK13556 81 DKYLNQFLEADKVVFAFPLW-NFTIPAVLHTYIDYLNRAGKTFKYTPEGPVGLIGDKKVALLNARGGVYSEGPAAEVEMA 159 (208)
T ss_pred HHHHHHHHHCCEEEEecccc-ccCCcHHHHHHHHHHhcCCceeecCCCCCccccCCCEEEEEEeCCCCCCCCCchhhhcc
Confidence 12224567789999999999 9999999999999988531 011358899999987633345 344445
Q ss_pred HHHHHHHHHhcCCeEeecceeccCCCCchHHHHHHHHHHHHHHH
Q 007567 218 AKVVDEILANQGAKRLVPVGLGDDDQCIEDDFSAWRELVWPELD 261 (598)
Q Consensus 218 ~k~ld~~L~~lGA~ri~~~g~gD~~~~~e~~f~~W~~~l~~~L~ 261 (598)
...+...|.-+|++.+-. ...+-.....+.-.++.++....+.
T Consensus 160 ~~~l~~il~~~G~~~~~~-v~~~~~~~~~~~~~~~~~~a~~~~~ 202 (208)
T PRK13556 160 VKYVASMMGFFGVTNMET-VVIEGHNQFPDKAEEIITAGLEEAA 202 (208)
T ss_pred HHHHHHHHHhcCCCceeE-EEEehhhcChhHHHHHHHHHHHHHH
Confidence 567888888899875432 2222111123344555554444443
No 124
>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional
Probab=97.57 E-value=0.00015 Score=87.80 Aligned_cols=81 Identities=11% Similarity=0.034 Sum_probs=57.9
Q ss_pred CCcccccCCCCCCCCCeEEEEEEEEEeeCCCCCcccCcchHHhh-ccCCCCCCCCCceE-EEEEeCCCccCCCCCCCcEE
Q 007567 491 QPRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLCSTWMK-NSLPMEKSNDCSWA-PIFVRQSNFKLPADAKVPII 568 (598)
Q Consensus 491 ~pR~YSIsSsp~~~~~~i~itv~~v~~~~~~g~~~~G~~S~~L~-~~~~~~~~~~~~~~-~i~v~~s~F~lp~~~~~PiI 568 (598)
..|.|||++.+.. .++|.|.+.+ .|..|.||. ++.+++ .+ .+..+.+.|.... ...+++
T Consensus 43 errplSIa~~~~~-~g~i~l~vk~-----------vG~~T~~L~~~lk~Gd------~l~~v~GPlG~~~~~~-~~~~vl 103 (1006)
T PRK12775 43 ERIPLTVADFDRK-KGTITMVVQA-----------LGKTTREMMTKFKAGD------TFEDFVGPLGLPQHID-KAGHVV 103 (1006)
T ss_pred eeEEEEecCcCCC-CCEEEEEEEe-----------cCcHHHHHHhcCCCCC------EEeeeecCCCCCCCCC-CCCeEE
Confidence 4589999998754 4578777653 388999984 666654 33 3444556654332 246899
Q ss_pred EEeCCCChHhHHHHHHHHhhcc
Q 007567 569 MIGPGTGLAPFRGSWSRTGTLS 590 (598)
Q Consensus 569 mIg~GTGiAPfr~flqer~~~~ 590 (598)
|||+|+||||+++++++....+
T Consensus 104 lVaGGiGIAPl~s~~r~l~~~g 125 (1006)
T PRK12775 104 LVGGGLGVAPVYPQLRAFKEAG 125 (1006)
T ss_pred EEEEhHHHHHHHHHHHHHHhCC
Confidence 9999999999999999876543
No 125
>COG4097 Predicted ferric reductase [Inorganic ion transport and metabolism]
Probab=97.54 E-value=0.00015 Score=76.49 Aligned_cols=80 Identities=16% Similarity=0.208 Sum_probs=61.2
Q ss_pred CCCCcccccCCCCCCCCCeEEEEEEEEEeeCCCCCcccCcchHHhhc-cCCCCCCCCCceEEEEEeCCCccCCCCCCCcE
Q 007567 489 RLQPRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLCSTWMKN-SLPMEKSNDCSWAPIFVRQSNFKLPADAKVPI 567 (598)
Q Consensus 489 ~l~pR~YSIsSsp~~~~~~i~itv~~v~~~~~~g~~~~G~~S~~L~~-~~~~~~~~~~~~~~i~v~~s~F~lp~~~~~Pi 567 (598)
++.|..||||+|... +++.++|+. .|-.|.-|++ +++| +++.+..+.|.|......++ -
T Consensus 259 ~~~~HPFTIa~s~~~--sel~FsIK~-----------LGD~Tk~l~dnLk~G------~k~~vdGPYG~F~~~~g~~~-Q 318 (438)
T COG4097 259 RMRPHPFTIACSHEG--SELRFSIKA-----------LGDFTKTLKDNLKVG------TKLEVDGPYGKFDFERGLNT-Q 318 (438)
T ss_pred cCCCCCeeeeeCCCC--ceEEEEehh-----------hhhhhHHHHHhccCC------ceEEEecCcceeecccCCcc-c
Confidence 356888999999765 488888864 4666766776 5444 35667777899988665444 8
Q ss_pred EEEeCCCChHhHHHHHHHHhh
Q 007567 568 IMIGPGTGLAPFRGSWSRTGT 588 (598)
Q Consensus 568 ImIg~GTGiAPfr~flqer~~ 588 (598)
|-||+|.||+||++||+....
T Consensus 319 VWIAGGIGITPFis~l~~l~~ 339 (438)
T COG4097 319 VWIAGGIGITPFISMLFTLAE 339 (438)
T ss_pred EEEecCcCcchHHHHHHhhcc
Confidence 999999999999999998765
No 126
>KOG3378 consensus Globins and related hemoproteins [Energy production and conversion]
Probab=97.46 E-value=0.0001 Score=74.58 Aligned_cols=81 Identities=17% Similarity=0.313 Sum_probs=60.5
Q ss_pred cccccCCCCCCCCCeEEEEEEEEEeeCCCCCcccCcchHHhhccCCCCCCCCCceEEEEEeCCCccCCC---CCCCcEEE
Q 007567 493 RYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLCSTWMKNSLPMEKSNDCSWAPIFVRQSNFKLPA---DAKVPIIM 569 (598)
Q Consensus 493 R~YSIsSsp~~~~~~i~itv~~v~~~~~~g~~~~G~~S~~L~~~~~~~~~~~~~~~~i~v~~s~F~lp~---~~~~PiIm 569 (598)
|.||.|+......+.+.|.|+.+- .|+.|+|+++-...| +.+.+.-+.|+|.... +.++|++|
T Consensus 202 ~~~~~S~~~~t~rN~~R~sVr~~A---------~G~VS~~~H~~~KVG-----D~v~~S~PAG~F~~~r~~~~~N~PL~~ 267 (385)
T KOG3378|consen 202 REYSLSNRVDTCRNQFRISVRRVA---------GGVVSNFVHDNLKVG-----DIVGVSPPAGNFVYKRSEENVNRPLLC 267 (385)
T ss_pred HHHHHhhhhhhhccceeEEEeehh---------chhhHHHhhcccccc-----ceeeccCCCccceeehhhhccCCceEE
Confidence 445555554444577788787663 599999999865544 3556666678997754 46799999
Q ss_pred EeCCCChHhHHHHHHHHh
Q 007567 570 IGPGTGLAPFRGSWSRTG 587 (598)
Q Consensus 570 Ig~GTGiAPfr~flqer~ 587 (598)
.+.|.||+|+..+|++..
T Consensus 268 ~a~GiGiTPLi~iiE~~~ 285 (385)
T KOG3378|consen 268 FAGGIGITPLIPIIETAL 285 (385)
T ss_pred ecCCcCccccHHHHHHHH
Confidence 999999999999998865
No 127
>COG0655 WrbA Multimeric flavodoxin WrbA [General function prediction only]
Probab=97.22 E-value=0.0038 Score=61.92 Aligned_cols=123 Identities=14% Similarity=0.069 Sum_probs=86.9
Q ss_pred eEEEEEeCCCchHHHHHHHHHHHHHhhcCCceeEEEcCCCCCC-------------------c-chHHHHhhccCCeEEE
Q 007567 106 KVTIFFGTQTGTAEGFAKALADEARARYDKAIFKVVDIDDYAD-------------------E-EDEYEEKLKKENIVFF 165 (598)
Q Consensus 106 ~v~I~YgSqTGtae~~A~~la~~l~~~~~~~~~~v~dl~~~~~-------------------~-~~~~~~~l~~~~~vIf 165 (598)
.|.+.|-| .|||+.+++.+++.+++.| +.++++.+.+++. | .+++.+.+.+.+.+||
T Consensus 5 ~I~gs~r~-~G~t~~l~~~~~~g~~~~G--~E~~~i~v~~~~i~~c~~c~~c~~~~~c~~~dD~~~~i~~~l~~aD~iI~ 81 (207)
T COG0655 5 GINGSPRS-NGNTAKLAEAVLEGAEEAG--AEVEIIRLPEKNIKPCTGCFACWKKKPCVIKDDDMNEIYEKLLEADGIIF 81 (207)
T ss_pred EEEecCCC-CCcHHHHHHHHHHHHHHcC--CEEEEEEecCCCcccchHHHhhhccCCCCCCcccHHHHHHHHHHCCEEEE
Confidence 45666777 8999999999999999885 5566666665410 1 1334456788899999
Q ss_pred EEecCCCCCcchHHHHHHHH-HHhhcCCCcccCCceEEEEeecCCcchhHhHHHHHHHHHHHhcCCeEe
Q 007567 166 FLATYGDGEPTDNAARFYKW-FTEQKEGGEWLQKLKYGVFGLGNRQYEHFNKIAKVVDEILANQGAKRL 233 (598)
Q Consensus 166 ~~sTyG~Geppdna~~F~~~-L~~~~~~~~~l~~~~yaVFGLGds~Y~~Fn~~~k~ld~~L~~lGA~ri 233 (598)
++||| .|..+..++.|++. +.-.. ....|.++..++|..+.+.-..-......+...+...|..-+
T Consensus 82 gsPvy-~g~vsa~~K~fiDR~~~~~~-~~~~l~~k~~~~~~~~~~~~g~~e~~~~~~~~~~~~~~~~~v 148 (207)
T COG0655 82 GSPVY-FGNVSAQMKAFIDRSTGPLW-APGALRGKVGAAFVSGGSRGGGQEATLLSLLLFFLHHGMIVV 148 (207)
T ss_pred eCCee-cCCchHHHHHHHhhcchhhc-ccchhccccceEEEEeccCCCChHHHHHHHHHHHHHcCCeEe
Confidence 99999 99999999999998 33221 124588888888887665543332345566666666665544
No 128
>TIGR02690 resist_ArsH arsenical resistance protein ArsH. Members of this protein family occur in arsenate resistance operons that include at least two different types of arsenate reductase. ArsH is not required for arsenate resistance in some systems. This family belongs to the larger family of NADPH-dependent FMN reductases (Pfam model pfam03358). The function of ArsH is not known.
Probab=96.63 E-value=0.05 Score=54.65 Aligned_cols=128 Identities=8% Similarity=0.013 Sum_probs=89.5
Q ss_pred ccCCceEEEEEeCC--CchHHHHHHHHHHHHHhhcCCceeEEEcCCCCCC---cch------HHHHhhccCCeEEEEEec
Q 007567 101 DDGKQKVTIFFGTQ--TGTAEGFAKALADEARARYDKAIFKVVDIDDYAD---EED------EYEEKLKKENIVFFFLAT 169 (598)
Q Consensus 101 ~~~~~~v~I~YgSq--TGtae~~A~~la~~l~~~~~~~~~~v~dl~~~~~---~~~------~~~~~l~~~~~vIf~~sT 169 (598)
+..+.+|+++.||. .-++..+|+.+++.+.+.+ ..++++|+.+++. +.+ .+...+...+.+||+++-
T Consensus 23 ~~~~~kI~~I~GSlR~~S~n~~la~~~~~~~~~~g--~~v~~idl~~lPl~~~d~~~~p~v~~l~~~v~~ADgvii~TPE 100 (219)
T TIGR02690 23 KPHIPRILLLYGSLRERSYSRLLAEEAARLLGCEG--RETRIFDPPGLPLPDAAHADHPKVRELRQLSEWSEGQVWCSPE 100 (219)
T ss_pred CCCCCEEEEEECCCCCcchHHHHHHHHHHHHhhcC--CEEEEeCcccCCCCCcCcccCHHHHHHHHHHHhCCEEEEeCCc
Confidence 34467899999986 3456778888888887553 5677887765432 111 122345678999999999
Q ss_pred CCCCCcchHHHHHHHHHHhhcCCCcccCCceEEEEeecCCcchhHhHHHHHHHHHHHhcCCeEe
Q 007567 170 YGDGEPTDNAARFYKWFTEQKEGGEWLQKLKYGVFGLGNRQYEHFNKIAKVVDEILANQGAKRL 233 (598)
Q Consensus 170 yG~Geppdna~~F~~~L~~~~~~~~~l~~~~yaVFGLGds~Y~~Fn~~~k~ld~~L~~lGA~ri 233 (598)
| +|..|.--+.+++|+.....+...+.++..+|+|..-... --.+...+...|..+|+..+
T Consensus 101 Y-n~sipg~LKNaiDwls~~~~~~~~~~~KpvaivgaSgg~~--g~ra~~~LR~vl~~l~a~v~ 161 (219)
T TIGR02690 101 R-HGAITGSQKDQIDWIPLSVGPVRPTQGKTLAVMQVSGGSQ--SFNAVNILRRLGRWMRMPTI 161 (219)
T ss_pred c-ccCcCHHHHHHHHhcccCcccccccCCCcEEEEEeCCcHh--HHHHHHHHHHHHHHCCCccc
Confidence 9 9999999999999997532111358899999998531111 12355778888889998754
No 129
>PRK13555 azoreductase; Provisional
Probab=96.50 E-value=0.22 Score=49.64 Aligned_cols=128 Identities=10% Similarity=0.141 Sum_probs=90.7
Q ss_pred CceEEEEEeCC----CchHHHHHHHHHHHHHhhcCCceeEEEcCCCCCC--------------------cch--------
Q 007567 104 KQKVTIFFGTQ----TGTAEGFAKALADEARARYDKAIFKVVDIDDYAD--------------------EED-------- 151 (598)
Q Consensus 104 ~~~v~I~YgSq----TGtae~~A~~la~~l~~~~~~~~~~v~dl~~~~~--------------------~~~-------- 151 (598)
|++|+++++|= .-.+..+|+.+.+.+++.++...+.+.||-+.+. .++
T Consensus 1 M~kiL~I~asp~~~~~S~s~~la~~f~~~~~~~~p~~~V~~~DL~~~~~p~l~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 80 (208)
T PRK13555 1 MSKVLFVKANDRPAEQAVSSKMYETFVSTYKEANPNTEITELDLFALDLPYYGNIAISGGYKRSQGMELTAEEEKAVATV 80 (208)
T ss_pred CCeEEEEeCCCCCCCCcHHHHHHHHHHHHHHHhCCCCeEEEEECCCCCCCcCCHHHHHhhccCCCcccCCHHHHHHHHHH
Confidence 46899999993 3568888999999998887666788888755321 001
Q ss_pred -HHHHhhccCCeEEEEEecCCCCCcchHHHHHHHHHHhhc------C--CCcccCCceEEEEeecCCcch-----hHhHH
Q 007567 152 -EYEEKLKKENIVFFFLATYGDGEPTDNAARFYKWFTEQK------E--GGEWLQKLKYGVFGLGNRQYE-----HFNKI 217 (598)
Q Consensus 152 -~~~~~l~~~~~vIf~~sTyG~Geppdna~~F~~~L~~~~------~--~~~~l~~~~yaVFGLGds~Y~-----~Fn~~ 217 (598)
.+.+.+...+.+||++|-| ++.+|.-.+.|++|+.... . ....|++++..|++.-...|. .....
T Consensus 81 ~~~~~~~~~AD~lvi~~P~~-n~~~Pa~LK~~iD~v~~~G~tF~~~~~~~~gll~~k~~~vi~~~gg~~~~~~~~~~~~~ 159 (208)
T PRK13555 81 DQYLNQFLEADKVVFAFPLW-NFTVPAPLITYISYLSQAGKTFKYTANGPEGLAGGKKVVVLGARGSDYSSEQMAPMEMA 159 (208)
T ss_pred HHHHHHHHHcCEEEEEcCcc-cccchHHHHHHHHHHhcCCceeecCCCCCccccCCCeEEEEEcCCCCCCCCCchhhhhH
Confidence 1224566789999999999 8999999999999987531 1 123588999999987333452 22223
Q ss_pred HHHHHHHHHhcCCeE
Q 007567 218 AKVVDEILANQGAKR 232 (598)
Q Consensus 218 ~k~ld~~L~~lGA~r 232 (598)
...+...|.-+|.+.
T Consensus 160 ~~yl~~il~~~Gi~~ 174 (208)
T PRK13555 160 VNYVTTVLGFWGITN 174 (208)
T ss_pred HHHHHHHHHhcCCCc
Confidence 367777888889864
No 130
>PRK04930 glutathione-regulated potassium-efflux system ancillary protein KefG; Provisional
Probab=96.49 E-value=0.25 Score=48.37 Aligned_cols=158 Identities=13% Similarity=0.110 Sum_probs=98.7
Q ss_pred cCCceEEEEEeCCCchHHHHHHHHHHHHHhhcCCceeEEEcCCCCC----CcchHHHHhhccCCeEEEEEecCCCCCcch
Q 007567 102 DGKQKVTIFFGTQTGTAEGFAKALADEARARYDKAIFKVVDIDDYA----DEEDEYEEKLKKENIVFFFLATYGDGEPTD 177 (598)
Q Consensus 102 ~~~~~v~I~YgSqTGtae~~A~~la~~l~~~~~~~~~~v~dl~~~~----~~~~~~~~~l~~~~~vIf~~sTyG~Geppd 177 (598)
..+++++|++++-.+..-. ++++..++.+.. ..+.+.||.+.- .|.......|...+.+||..|.| ...+|.
T Consensus 3 ~~~~kiLiI~aHP~~~~S~-~n~~l~~~~~~~--~~v~~~DL~~~~p~~~~d~~~eq~~l~~aD~iV~~fPl~-w~~~Pa 78 (184)
T PRK04930 3 SQPPKVLLLYAHPESQDSV-ANRVLLKPAQQL--EHVTVHDLYAHYPDFFIDIPHEQALLREHDVIVFQHPLY-TYSCPA 78 (184)
T ss_pred CCCCEEEEEECCCCcccCH-HHHHHHHHHHcC--CceEEEECcccCCCCCCCHHHHHHHHHhCCEEEEEcCcc-ccCCcH
Confidence 4468999999998765322 333333333333 346788886542 22222235678899999999999 888888
Q ss_pred HHHHHHHHHHhhc----CCCcccCCceEEEEee-cCCc--ch--hHhH-----HHHHHHHHHHhcCCeEeecceeccCCC
Q 007567 178 NAARFYKWFTEQK----EGGEWLQKLKYGVFGL-GNRQ--YE--HFNK-----IAKVVDEILANQGAKRLVPVGLGDDDQ 243 (598)
Q Consensus 178 na~~F~~~L~~~~----~~~~~l~~~~yaVFGL-Gds~--Y~--~Fn~-----~~k~ld~~L~~lGA~ri~~~g~gD~~~ 243 (598)
-.+.|++..-... ..+..|+|+++.|.-. |... |. .|++ .-.-+...+.-+|.+-+-+....+...
T Consensus 79 ~LK~wiD~V~~~g~ay~~~g~~l~gK~~~~~~T~G~~~~~y~~~g~~~~~~~~ll~p~~~~~~~~Gm~~~~~~~~~~~~~ 158 (184)
T PRK04930 79 LLKEWLDRVLSRGFASGPGGNALAGKYWRSVITTGEPESAYRYDGYNRYPMSDILRPFELTAAMCRMHWLSPIIIYWARR 158 (184)
T ss_pred HHHHHHHHHHhcCcccCCCCCccCCCEEEEEEECCCChHHhCccCcCCCCHHHHHHHHHHHHHHcCCeEcCcEEEecCCC
Confidence 8888887655321 1123588998888643 4433 42 2221 222223444456888877776666555
Q ss_pred CchHHHHHHHHHHHHHHHhh
Q 007567 244 CIEDDFSAWRELVWPELDNL 263 (598)
Q Consensus 244 ~~e~~f~~W~~~l~~~L~~~ 263 (598)
..+++.++|.++....|...
T Consensus 159 ~~~~~~~~~~~~~~~~l~~~ 178 (184)
T PRK04930 159 QSPEELASHARAYGDWLANP 178 (184)
T ss_pred CCHHHHHHHHHHHHHHHhhh
Confidence 56777888888777766554
No 131
>PF00970 FAD_binding_6: Oxidoreductase FAD-binding domain; InterPro: IPR008333 These sequences contain an oxidoreductase FAD-binding domain. To date, the 3D-structures of the flavoprotein domain of Zea mays (Maize) nitrate reductase [] and of pig NADH:cytochrome b5 reductase [] have been solved. The overall fold is similar to that of ferredoxin:NADP+ reductase []: the FAD-binding domain (N-terminal) has the topology of an anti-parallel beta-barrel, while the NAD(P)-binding domain (C-terminal) has the topology of a classical pyridine dinucleotide-binding fold (i.e. a central parallel beta-sheet flanked by 2 helices on each side).; PDB: 1JB9_A 3LVB_A 3LO8_A 1FRN_A 1FND_A 1BX1_A 1FNC_A 1FNB_A 1BX0_A 1FRQ_A ....
Probab=96.40 E-value=0.0055 Score=53.00 Aligned_cols=52 Identities=23% Similarity=0.215 Sum_probs=41.3
Q ss_pred CCcccccCCCCCCCCCeEEEEEEEEEeeCCCCCcccCcchHHhhccCCCCCCCCCceEEEEEeCCCcc
Q 007567 491 QPRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLCSTWMKNSLPMEKSNDCSWAPIFVRQSNFK 558 (598)
Q Consensus 491 ~pR~YSIsSsp~~~~~~i~itv~~v~~~~~~g~~~~G~~S~~L~~~~~~~~~~~~~~~~i~v~~s~F~ 558 (598)
..|.|||+|+|.. .+.++|+|+.. ..|..|+||+++.+++ .+.|.-+.|+|.
T Consensus 47 ~~R~yS~~s~~~~-~~~~~~~ik~~---------~~G~~S~~L~~l~~Gd------~v~i~gP~G~f~ 98 (99)
T PF00970_consen 47 VSRPYSPASSPDD-KGYLEFAIKRY---------PNGRVSRYLHQLKPGD------EVEIRGPYGNFT 98 (99)
T ss_dssp EEEEEEBCSSTTS-SSEEEEEEEEC---------TTSHHHHHHHTSCTTS------EEEEEEEESSEE
T ss_pred eecceeEeeecCC-CCcEEEEEEec---------cCCHHHHHHHhCCCCC------EEEEEEcccccC
Confidence 3599999999964 56899998764 4799999999987754 567777778885
No 132
>PRK06567 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Validated
Probab=94.69 E-value=0.098 Score=62.74 Aligned_cols=70 Identities=14% Similarity=0.097 Sum_probs=53.3
Q ss_pred CCcccccCCCCCCCCCeEEEEEEEEEeeCCCCCcccCcchHHhhccCCCCCCCCCceEEEEEeCCC-ccCCCCCCCcEEE
Q 007567 491 QPRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLCSTWMKNSLPMEKSNDCSWAPIFVRQSN-FKLPADAKVPIIM 569 (598)
Q Consensus 491 ~pR~YSIsSsp~~~~~~i~itv~~v~~~~~~g~~~~G~~S~~L~~~~~~~~~~~~~~~~i~v~~s~-F~lp~~~~~PiIm 569 (598)
.||.+||++.... .+.|++++.+| |-.|.+|+++.+++ .+.|..+-|+ |.+|. ...+++
T Consensus 839 ~p~P~SI~~vD~e-~g~It~i~rvV-----------GkgT~~Ls~l~~Gd------~v~v~GPLG~pF~i~~--~k~vLL 898 (1028)
T PRK06567 839 EPVALSPIDIDVE-KGLISFIVFEV-----------GKSTSLCKTLSENE------KVVLMGPTGSPLEIPQ--NKKIVI 898 (1028)
T ss_pred CceeEEeeccCCC-CCEEEEEEEEE-----------ChHHHHHhcCCCCC------EEEEEcccCCCCCCCC--CCeEEE
Confidence 6789999988654 46799988766 78999999998864 3445555554 77764 346999
Q ss_pred EeCCCChHhHH
Q 007567 570 IGPGTGLAPFR 580 (598)
Q Consensus 570 Ig~GTGiAPfr 580 (598)
||+|.|+||+.
T Consensus 899 VgGGVGiApLa 909 (1028)
T PRK06567 899 VDFEVGNIGLL 909 (1028)
T ss_pred EEccccHHHHH
Confidence 99999999844
No 133
>COG0431 Predicted flavoprotein [General function prediction only]
Probab=94.16 E-value=0.68 Score=45.11 Aligned_cols=123 Identities=15% Similarity=0.187 Sum_probs=83.5
Q ss_pred ceEEEEEeCCC--chHHHHHHHHHHHHHhhcCCceeEEEcCC--CCCCc---------chHHHHhhccCCeEEEEEecCC
Q 007567 105 QKVTIFFGTQT--GTAEGFAKALADEARARYDKAIFKVVDID--DYADE---------EDEYEEKLKKENIVFFFLATYG 171 (598)
Q Consensus 105 ~~v~I~YgSqT--Gtae~~A~~la~~l~~~~~~~~~~v~dl~--~~~~~---------~~~~~~~l~~~~~vIf~~sTyG 171 (598)
++|++++||.. -.+..+|+.+++.+...+. ..+...|++ -|+.+ -..+.+.+...+.+||++|-|
T Consensus 1 ~kil~i~GS~r~~S~~~~la~~~~~~l~~~~~-~~~~~~~~~lP~~~~d~~~~~~p~~v~~~~~~i~~aD~li~~tPeY- 78 (184)
T COG0431 1 MKILIISGSLRRGSFNRALAEAAAKLLPAGGE-VEVEFDDLDLPLYNEDLEADGLPPAVQALREAIAAADGLIIATPEY- 78 (184)
T ss_pred CeEEEEeccCcccchHHHHHHHHHHhhcccCc-eEEEecccccCCCCcchhhccCCHHHHHHHHHHHhCCEEEEECCcc-
Confidence 57899999865 4567788888888876542 222222221 11111 111234566789999999999
Q ss_pred CCCcchHHHHHHHHHHhhcCCCcccCCceEEEEeecCCcchhHhHHHHHHHHHHHhcCCeEeec
Q 007567 172 DGEPTDNAARFYKWFTEQKEGGEWLQKLKYGVFGLGNRQYEHFNKIAKVVDEILANQGAKRLVP 235 (598)
Q Consensus 172 ~Geppdna~~F~~~L~~~~~~~~~l~~~~yaVFGLGds~Y~~Fn~~~k~ld~~L~~lGA~ri~~ 235 (598)
+|..|.-.+..++||... .+.++..+++|-|.... +.-.+...+...|..+|+..+-.
T Consensus 79 n~s~pg~lKnaiD~l~~~-----~~~~Kpv~~~~~s~g~~-~~~~a~~~Lr~vl~~~~~~~~~~ 136 (184)
T COG0431 79 NGSYPGALKNAIDWLSRE-----ALGGKPVLLLGTSGGGA-GGLRAQNQLRPVLSFLGARVIPA 136 (184)
T ss_pred CCCCCHHHHHHHHhCCHh-----HhCCCcEEEEecCCCch-hHHHHHHHHHHHHHhcCceeccc
Confidence 999999999999999753 68899988888654333 23335577888888888886643
No 134
>PRK00871 glutathione-regulated potassium-efflux system ancillary protein KefF; Provisional
Probab=93.58 E-value=2.5 Score=41.05 Aligned_cols=151 Identities=11% Similarity=0.112 Sum_probs=92.9
Q ss_pred EEEEEeCCCchHHHHHHHHHHHHHhhcCCceeEEEcCCCCCC----cchHHHHhhccCCeEEEEEecCCCCCcchHHHHH
Q 007567 107 VTIFFGTQTGTAEGFAKALADEARARYDKAIFKVVDIDDYAD----EEDEYEEKLKKENIVFFFLATYGDGEPTDNAARF 182 (598)
Q Consensus 107 v~I~YgSqTGtae~~A~~la~~l~~~~~~~~~~v~dl~~~~~----~~~~~~~~l~~~~~vIf~~sTyG~Geppdna~~F 182 (598)
|+|++|.--.....+-+.|.+.++.. ..+++.||.+..+ |-....+.|...+.+||..|-| ...+|.-.+.+
T Consensus 2 iLvi~aHP~~~~S~~n~al~~~~~~~---~~v~v~dL~~~~p~~~~dv~~eq~~l~~aD~iV~~fP~~-w~~~Pa~lK~w 77 (176)
T PRK00871 2 ILIIYAHPYPHHSHANKRMLEQARTL---EGVEIRSLYQLYPDFNIDIAAEQEALSRADLIVWQHPMQ-WYSIPPLLKLW 77 (176)
T ss_pred EEEEEcCCCCccChHHHHHHHHHHhc---CCeEEEEChhhcCCcchhHHHHHHHHHhCCEEEEEcChh-hccccHHHHHH
Confidence 78999988876556777787777643 2477888765322 2212235678899999999999 88899888888
Q ss_pred HHHHHhhc----CCCcccCCceE-EEEeecCCc--ch-----hHhHHHHHHHHHHHhcCCeEeecceeccCCCCchHHHH
Q 007567 183 YKWFTEQK----EGGEWLQKLKY-GVFGLGNRQ--YE-----HFNKIAKVVDEILANQGAKRLVPVGLGDDDQCIEDDFS 250 (598)
Q Consensus 183 ~~~L~~~~----~~~~~l~~~~y-aVFGLGds~--Y~-----~Fn~~~k~ld~~L~~lGA~ri~~~g~gD~~~~~e~~f~ 250 (598)
++..-... ..+..|+|+++ .++-.|... |. .|.....-+...+.-+|.+-+-|..........+++++
T Consensus 78 iD~V~~~g~ay~~~g~~l~gk~~~~~~t~G~~~~~y~~~g~~~~~~ll~pl~~~~~~~G~~~l~~~~~~~~~~~~~~~~~ 157 (176)
T PRK00871 78 IDKVLSHGWAYGHGGTALHGKHLLWAVTTGGGESHFEIGAHPGFDVLSQPLQATALYCGLNWLPPFAMHCTFICDDETLE 157 (176)
T ss_pred HHHHhhCCccccCCCCCcCCCEEEEEEeCCCCHHHHCCCCcCCchHHHHHHHHHHHHcCCeEcceEEEeeeccCCHHHHH
Confidence 87654311 12235888877 455556552 31 22333445556666679987766654333333344555
Q ss_pred HHHHHHHHHHH
Q 007567 251 AWRELVWPELD 261 (598)
Q Consensus 251 ~W~~~l~~~L~ 261 (598)
+..++..+.|.
T Consensus 158 ~~~~~~~~~L~ 168 (176)
T PRK00871 158 GQARHYKQRLL 168 (176)
T ss_pred HHHHHHHHHHH
Confidence 55444444443
No 135
>KOG3135 consensus 1,4-benzoquinone reductase-like; Trp repressor binding protein-like/protoplast-secreted protein [General function prediction only]
Probab=93.48 E-value=0.2 Score=47.75 Aligned_cols=126 Identities=19% Similarity=0.147 Sum_probs=81.1
Q ss_pred ceEEEEEeCCCchHHHHHHHHHHHHHhhcCCceeEEEcCCC------------------CCCcchHHHHhhccCCeEEEE
Q 007567 105 QKVTIFFGTQTGTAEGFAKALADEARARYDKAIFKVVDIDD------------------YADEEDEYEEKLKKENIVFFF 166 (598)
Q Consensus 105 ~~v~I~YgSqTGtae~~A~~la~~l~~~~~~~~~~v~dl~~------------------~~~~~~~~~~~l~~~~~vIf~ 166 (598)
.+|.|+|-|..|.-+.+|+...+.+...++.+ .+..+.+ |..-. .+.|.+++.++|+
T Consensus 2 ~kv~iv~ys~yghv~~lAe~~kkGie~a~geA--~i~qVpEtl~~evl~km~a~pkp~d~piit---~~~L~e~D~flFG 76 (203)
T KOG3135|consen 2 PKVAIVIYSTYGHVAKLAEAEKKGIESAGGEA--TIYQVPETLSEEVLEKMKAPPKPSDYPIIT---PETLTEYDGFLFG 76 (203)
T ss_pred ceEEEEEEEcccHHHHHHHHHHhhhhccCCee--EEEEcccccCHHHHHHhcCCCCCccCCccC---HHHHhhccceeec
Confidence 57899999999999999999988888776533 3333322 21110 2467788999999
Q ss_pred EecCCCCCcchHHHHHHHHHHhhcCCCcccCCceEEEEeecCCcchhHhHHHHHHHHHHHhcCCeEeeccee
Q 007567 167 LATYGDGEPTDNAARFYKWFTEQKEGGEWLQKLKYGVFGLGNRQYEHFNKIAKVVDEILANQGAKRLVPVGL 238 (598)
Q Consensus 167 ~sTyG~Geppdna~~F~~~L~~~~~~~~~l~~~~yaVFGLGds~Y~~Fn~~~k~ld~~L~~lGA~ri~~~g~ 238 (598)
.+|- -|.+|..++.||+.-... -....|.|+..++|=.+-+.=.-=...+..--..|.-+| -.++|+|.
T Consensus 77 ~PTR-fG~~~AQ~kaF~D~TggL-W~~~aL~GK~AG~F~Stgs~gGgqE~talta~t~LvHHG-mifVPlGY 145 (203)
T KOG3135|consen 77 FPTR-FGNMPAQWKAFWDSTGGL-WAKGALAGKPAGIFVSTGSQGGGQETTALTAITQLVHHG-MIFVPLGY 145 (203)
T ss_pred cccc-ccCcHHHHHHHHhccCch-hhhccccCCceeEEEeccCCCCchHhHHHHHHHHHHhcc-eEEEeccc
Confidence 9999 899999999999852111 122468999999996654332111111222222333345 44668875
No 136
>KOG0039 consensus Ferric reductase, NADH/NADPH oxidase and related proteins [Inorganic ion transport and metabolism; Secondary metabolites biosynthesis, transport and catabolism]
Probab=91.77 E-value=0.35 Score=56.27 Aligned_cols=98 Identities=16% Similarity=0.138 Sum_probs=53.6
Q ss_pred CCCCcccccCCCCCCCCCeEEEEEEEEEeeCCCCCcccCcchHHhhccCCCCCCC--CCceEEEEEeCCCccCCCCCCCc
Q 007567 489 RLQPRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLCSTWMKNSLPMEKSN--DCSWAPIFVRQSNFKLPADAKVP 566 (598)
Q Consensus 489 ~l~pR~YSIsSsp~~~~~~i~itv~~v~~~~~~g~~~~G~~S~~L~~~~~~~~~~--~~~~~~i~v~~s~F~lp~~~~~P 566 (598)
.+|-..|||+||| .++.+.+.++....- -..+-+.+.....+..... ...++.|..+.|.=.-.-..-.-
T Consensus 397 ~~qwHPFTItSsp--~dd~lsvhIk~~g~w------T~~L~~~~~~~~~~~~~~~~~~~~~i~IdGPYG~~s~d~~~~e~ 468 (646)
T KOG0039|consen 397 KLEWHPFTITSAP--EDDFLSVHIKALGDW------TEKLRNAFSEVSQPPESDKSYPFPKILIDGPYGAPSQDVFKYEV 468 (646)
T ss_pred ccccCCceeecCC--CCCEEEEEEEecCcH------HHHHHHHHhhhcccccccccccCceEEEECCCCCCchhhhhcce
Confidence 4678899999999 567888888754110 0112122111111100000 01233333343321111111233
Q ss_pred EEEEeCCCChHhHHHHHHHHhhccCccc
Q 007567 567 IIMIGPGTGLAPFRGSWSRTGTLSIIFR 594 (598)
Q Consensus 567 iImIg~GTGiAPfr~flqer~~~~~~~~ 594 (598)
++|||+|.|++||.+.+++......-+|
T Consensus 469 ~vLV~~GiGvtPf~sil~~l~~~~~~~~ 496 (646)
T KOG0039|consen 469 LVLVGGGIGVTPFASILKDLLNKISLGR 496 (646)
T ss_pred EEEEccCcccCccHHHHHHHHhhccCCC
Confidence 6999999999999999999887666555
No 137
>KOG0560 consensus Sulfite reductase (ferredoxin) [Inorganic ion transport and metabolism]
Probab=90.95 E-value=0.11 Score=56.86 Aligned_cols=63 Identities=32% Similarity=0.518 Sum_probs=55.1
Q ss_pred EEeecCCcch------hHhHHHHHHHHHHHhcCCeEeecceeccCCC--CchHHHHHHHHHHHHHHHhhhC
Q 007567 203 VFGLGNRQYE------HFNKIAKVVDEILANQGAKRLVPVGLGDDDQ--CIEDDFSAWRELVWPELDNLLR 265 (598)
Q Consensus 203 VFGLGds~Y~------~Fn~~~k~ld~~L~~lGA~ri~~~g~gD~~~--~~e~~f~~W~~~l~~~L~~~~~ 265 (598)
|||+||+.|- .|++-.|.+..+|.+++|..+.++|+|+|.+ +....+..|--.||++|..-..
T Consensus 1 vfgfs~tf~~Pk~~~~~ftkp~k~~l~r~~~l~a~a~vtlglg~d~d~~~p~ta~s~~~p~l~eal~~~~~ 71 (638)
T KOG0560|consen 1 VFGFSDTFYWPKEDKSYFTKPKKSLLVRLAQLTAPALVTLGLGVDQDPDGPRTAYSDWEPILWEALGKGIN 71 (638)
T ss_pred CccccccccCcccCccccCCchHHHHHHHHHhcCCceeeeccCCCCCCCCccccccccChHHHHHhcCCCC
Confidence 6999999982 6999999999999999999999999998854 5778899999999999976443
No 138
>COG2249 MdaB Putative NADPH-quinone reductase (modulator of drug activity B) [General function prediction only]
Probab=90.09 E-value=8.8 Score=37.74 Aligned_cols=158 Identities=13% Similarity=0.102 Sum_probs=96.8
Q ss_pred ceEEEEEeCCC-chHHHHHHHHHHHHHhhcCCcee-----E----EEcCCC--CCCcchHHHHhhccCCeEEEEEecCCC
Q 007567 105 QKVTIFFGTQT-GTAEGFAKALADEARARYDKAIF-----K----VVDIDD--YADEEDEYEEKLKKENIVFFFLATYGD 172 (598)
Q Consensus 105 ~~v~I~YgSqT-Gtae~~A~~la~~l~~~~~~~~~-----~----v~dl~~--~~~~~~~~~~~l~~~~~vIf~~sTyG~ 172 (598)
++|+|+||--- ..+-..++...+.+.+++..... . +....| +..|-..-.+.+...+.+||.-|-| -
T Consensus 1 mkiLii~aHP~~sf~~~~~~~~~~~~n~~~~~v~~~dl~~~~fd~~~~~~d~~~~~Dv~~E~e~l~~AD~ivlqfPlw-W 79 (189)
T COG2249 1 MKILIIYAHPNESFTHALSDAALERLNEAGHEVALKDLYALGFDPYLTYPDGEFPIDVKAEQEKLLWADVIVLQFPLW-W 79 (189)
T ss_pred CcEEEEEeCchhhhhHHHHHHHHHHHHHcchHHHhhhhhhhcCCceeecCccCCCCCHHHHHHHHHhcceEEEEcCch-h
Confidence 57999999885 33444444444555544422110 1 111223 3333222236778899999999999 7
Q ss_pred CCcchHHHHHHHHHHhhc----CCC----cccCCceEEEEeecCCcchhHhHHHHH---------HHHHHHhcCCeEeec
Q 007567 173 GEPTDNAARFYKWFTEQK----EGG----EWLQKLKYGVFGLGNRQYEHFNKIAKV---------VDEILANQGAKRLVP 235 (598)
Q Consensus 173 Geppdna~~F~~~L~~~~----~~~----~~l~~~~yaVFGLGds~Y~~Fn~~~k~---------ld~~L~~lGA~ri~~ 235 (598)
+..|.--+.+++..-..- ..+ ..|.|+++-++..-+..-+.|...+.. +.-.+.-.|...+-+
T Consensus 80 ~~~PaiLKg~iDrV~~~Gfay~~~~~~~~~~L~gK~~~~~~T~G~~~~~y~~~g~~~~~~~~~~~~~~~~~~~g~~~~~~ 159 (189)
T COG2249 80 YSMPALLKGWIDRVFTPGFAYGAGGYGSGGLLQGKKAMLVVTTGAPEEAYREGGGNFFEGVLLDPLYGTFHYCGLGWLPP 159 (189)
T ss_pred ccCcHHHHHHHHHHhcCCcccccCCcccccccCCcEEEEEEecCCCHHHHhhcccCcccccccchhHHHHHHcCCccccc
Confidence 788888888777654311 111 469999999888755544444333332 234455567766666
Q ss_pred ceeccCCCCchHHHHHHHHHHHHHHHhh
Q 007567 236 VGLGDDDQCIEDDFSAWRELVWPELDNL 263 (598)
Q Consensus 236 ~g~gD~~~~~e~~f~~W~~~l~~~L~~~ 263 (598)
...++.+...++...+|.+++-..|++.
T Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 187 (189)
T COG2249 160 FTFYGADVIDDETRAAYLERYRAHLKEI 187 (189)
T ss_pred eeEeecccCCHHHHHHHHHHHHHHHHhh
Confidence 6666666567889999998887776654
No 139
>KOG1160 consensus Fe-S oxidoreductase [Energy production and conversion]
Probab=81.38 E-value=3.1 Score=45.50 Aligned_cols=146 Identities=10% Similarity=-0.020 Sum_probs=93.6
Q ss_pred CceEEEEEeCCCchHHHHHHHHHHHHHhhcCCceeEEEcCCCCCCcchHHHHhh-ccCCeEEEEEecCCCCCcchHHHHH
Q 007567 104 KQKVTIFFGTQTGTAEGFAKALADEARARYDKAIFKVVDIDDYADEEDEYEEKL-KKENIVFFFLATYGDGEPTDNAARF 182 (598)
Q Consensus 104 ~~~v~I~YgSqTGtae~~A~~la~~l~~~~~~~~~~v~dl~~~~~~~~~~~~~l-~~~~~vIf~~sTyG~Geppdna~~F 182 (598)
-.-++|.=+=+.|-+..||+.|++.+...+... ++. + +++..-...+ .-+-.+++.+=|.--|.+.+..++|
T Consensus 357 calslVgepi~yp~in~f~k~lH~k~issflvt-----naq-~-pe~~rnvk~vtqlyvsvda~Tktslk~idrPlfkdF 429 (601)
T KOG1160|consen 357 CALSLVGEPIMYPEINPFAKLLHQKLISSFLVT-----NAQ-F-PEDIRNVKPVTQLYVSVDASTKTSLKKIDRPLFKDF 429 (601)
T ss_pred heeeeecccccchhhhHHHHHHHhccchHHhcc-----ccc-C-hHHHhchhhhheeEEEEeecchhhhcCCCCchHHHH
Confidence 345677778888999999999999887654211 111 1 1000000011 1123355555566668889999999
Q ss_pred HHHHHhhcC---CCcccCCceEEEEeecCCcc--hhHhHHHHHHHHHHHhcCCeEeeccee---ccCCCCchHHHHHHHH
Q 007567 183 YKWFTEQKE---GGEWLQKLKYGVFGLGNRQY--EHFNKIAKVVDEILANQGAKRLVPVGL---GDDDQCIEDDFSAWRE 254 (598)
Q Consensus 183 ~~~L~~~~~---~~~~l~~~~yaVFGLGds~Y--~~Fn~~~k~ld~~L~~lGA~ri~~~g~---gD~~~~~e~~f~~W~~ 254 (598)
|+||.+... .+....-.|++++|.||+.= .+||.+++-+-.+++-+||+.+.+.-. -|.+....++|.++..
T Consensus 430 wEr~~d~l~~lk~K~qrtvyRlTlVkg~n~dd~~Ayfnlv~rglp~fieVkGvty~ges~~s~lTm~nvp~~Ee~v~Fv~ 509 (601)
T KOG1160|consen 430 WERFLDSLKALKKKQQRTVYRLTLVKGWNSDDLPAYFNLVSRGLPDFIEVKGVTYCGESELSNLTMTNVPWHEEVVEFVF 509 (601)
T ss_pred HHHHHHHHHHHHHhhcceEEEEEEeccccccccHHHHHHHhccCCceEEEeceeEecccccCcccccCccHHHHHHHHHH
Confidence 999986421 12234456999999999985 789999999999999999998654322 1222234556666655
Q ss_pred HH
Q 007567 255 LV 256 (598)
Q Consensus 255 ~l 256 (598)
.|
T Consensus 510 eL 511 (601)
T KOG1160|consen 510 EL 511 (601)
T ss_pred HH
Confidence 55
No 140
>PRK02261 methylaspartate mutase subunit S; Provisional
Probab=80.63 E-value=48 Score=30.72 Aligned_cols=130 Identities=15% Similarity=0.195 Sum_probs=78.8
Q ss_pred ceEEEEEeCCCchHHHHHHHHHHHHHhhcCCceeEEEcCCCCCCcchHHHHhhccCCeEEEEEecCCCCCcchHHHHHHH
Q 007567 105 QKVTIFFGTQTGTAEGFAKALADEARARYDKAIFKVVDIDDYADEEDEYEEKLKKENIVFFFLATYGDGEPTDNAARFYK 184 (598)
Q Consensus 105 ~~v~I~YgSqTGtae~~A~~la~~l~~~~~~~~~~v~dl~~~~~~~~~~~~~l~~~~~vIf~~sTyG~Geppdna~~F~~ 184 (598)
++-.|+-++--|-.-.+...+...+-+.. -++++++-...+ .+++.+...+.+.=+++.|.. .+..-..+..+.+
T Consensus 2 ~~~~vl~~~~~gD~H~lG~~iv~~~lr~~---G~eVi~LG~~vp-~e~i~~~a~~~~~d~V~lS~~-~~~~~~~~~~~~~ 76 (137)
T PRK02261 2 KKKTVVLGVIGADCHAVGNKILDRALTEA---GFEVINLGVMTS-QEEFIDAAIETDADAILVSSL-YGHGEIDCRGLRE 76 (137)
T ss_pred CCCEEEEEeCCCChhHHHHHHHHHHHHHC---CCEEEECCCCCC-HHHHHHHHHHcCCCEEEEcCc-cccCHHHHHHHHH
Confidence 44567888888988888887777665442 257888754332 223444455555544444444 3455567777777
Q ss_pred HHHhhcCCCcccCCceEEEEee---cCCcchhHhHHHHHHHHHHHhcCCeEeecceeccCCCCchHHHHHHHHHHH
Q 007567 185 WFTEQKEGGEWLQKLKYGVFGL---GNRQYEHFNKIAKVVDEILANQGAKRLVPVGLGDDDQCIEDDFSAWRELVW 257 (598)
Q Consensus 185 ~L~~~~~~~~~l~~~~yaVFGL---Gds~Y~~Fn~~~k~ld~~L~~lGA~ri~~~g~gD~~~~~e~~f~~W~~~l~ 257 (598)
.|++. .+.+.++.|=|- ++..+ ....++|+++|...+++.+. ..+++..|..+.|
T Consensus 77 ~L~~~-----~~~~~~i~vGG~~~~~~~~~-------~~~~~~l~~~G~~~vf~~~~------~~~~i~~~l~~~~ 134 (137)
T PRK02261 77 KCIEA-----GLGDILLYVGGNLVVGKHDF-------EEVEKKFKEMGFDRVFPPGT------DPEEAIDDLKKDL 134 (137)
T ss_pred HHHhc-----CCCCCeEEEECCCCCCccCh-------HHHHHHHHHcCCCEEECcCC------CHHHHHHHHHHHh
Confidence 77653 244555555442 11122 45567888999999997653 2456667766554
No 141
>PLN03116 ferredoxin--NADP+ reductase; Provisional
Probab=76.91 E-value=4.8 Score=42.35 Aligned_cols=7 Identities=14% Similarity=-0.031 Sum_probs=3.9
Q ss_pred cEEEEeC
Q 007567 566 PIIMIGP 572 (598)
Q Consensus 566 PiImIg~ 572 (598)
..++||+
T Consensus 260 ~~vYiCG 266 (307)
T PLN03116 260 AHIYFCG 266 (307)
T ss_pred cEEEEeC
Confidence 3566653
No 142
>TIGR00640 acid_CoA_mut_C methylmalonyl-CoA mutase C-terminal domain. Methylmalonyl-CoA mutase (EC 5.4.99.2) catalyzes a reversible isomerization between L-methylmalonyl-CoA and succinyl-CoA. The enzyme uses an adenosylcobalamin cofactor. It may be a homodimer, as in mitochondrion, or a heterodimer with partially homologous beta chain that does not bind the adenosylcobalamin cofactor, as in Propionibacterium freudenreichii. The most similar archaeal sequences are separate chains, such as AF2215 and AF2219 of Archaeoglobus fulgidus, that correspond roughly to the first 500 and last 130 residues, respectively of known methylmalonyl-CoA mutases. This model describes the C-terminal domain subfamily. In a neighbor-joining tree (methylaspartate mutase S chain as the outgroup), AF2219 branches with a coenzyme B12-dependent enzyme known not to be 5.4.99.2.
Probab=75.93 E-value=65 Score=29.67 Aligned_cols=112 Identities=12% Similarity=0.052 Sum_probs=71.9
Q ss_pred eEEEEEeCCCchHHHHHHHHHHHHHhhcCCceeEEEcCCCCCCcchHHHHhhccCCeEEEEEecCCCCCcchHHHHHHHH
Q 007567 106 KVTIFFGTQTGTAEGFAKALADEARARYDKAIFKVVDIDDYADEEDEYEEKLKKENIVFFFLATYGDGEPTDNAARFYKW 185 (598)
Q Consensus 106 ~v~I~YgSqTGtae~~A~~la~~l~~~~~~~~~~v~dl~~~~~~~~~~~~~l~~~~~vIf~~sTyG~Geppdna~~F~~~ 185 (598)
++.|+-|+..|..-+..+.|...+-+.++ ++|+|+--+.. .+++.+...+++.=+++.|+. +|...+.+....+.
T Consensus 2 ~~~v~~a~~g~D~Hd~g~~iv~~~l~~~G---feVi~lg~~~s-~e~~v~aa~e~~adii~iSsl-~~~~~~~~~~~~~~ 76 (132)
T TIGR00640 2 RPRILVAKMGQDGHDRGAKVIATAYADLG---FDVDVGPLFQT-PEEIARQAVEADVHVVGVSSL-AGGHLTLVPALRKE 76 (132)
T ss_pred CCEEEEEeeCCCccHHHHHHHHHHHHhCC---cEEEECCCCCC-HHHHHHHHHHcCCCEEEEcCc-hhhhHHHHHHHHHH
Confidence 45677788888888888777776655432 67888876543 334545555666555555555 57777888888888
Q ss_pred HHhhcCCCcccCCceEEEEeecCCcchhHhHHHHHHHHHHHhcCCeEeecce
Q 007567 186 FTEQKEGGEWLQKLKYGVFGLGNRQYEHFNKIAKVVDEILANQGAKRLVPVG 237 (598)
Q Consensus 186 L~~~~~~~~~l~~~~yaVFGLGds~Y~~Fn~~~k~ld~~L~~lGA~ri~~~g 237 (598)
|++.. +...+ |+.=|.-- +.-.+.|+++|..+++..|
T Consensus 77 L~~~g-----~~~i~--vivGG~~~--------~~~~~~l~~~Gvd~~~~~g 113 (132)
T TIGR00640 77 LDKLG-----RPDIL--VVVGGVIP--------PQDFDELKEMGVAEIFGPG 113 (132)
T ss_pred HHhcC-----CCCCE--EEEeCCCC--------hHhHHHHHHCCCCEEECCC
Confidence 87631 22333 44434332 2222458899999998876
No 143
>cd06208 CYPOR_like_FNR These ferredoxin reductases are related to the NADPH cytochrome p450 reductases (CYPOR), but lack the FAD-binding region connecting sub-domain. Ferredoxin-NADP+ reductase (FNR) is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins, such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap between the two domains. Ferredoxin-NADP+ reductase first accepts one electron from reduced ferredoxin to form a flavin semiquinone intermediate. The enzyme then accepts a second electron to form FADH2, which then
Probab=72.09 E-value=8 Score=40.15 Aligned_cols=51 Identities=24% Similarity=0.454 Sum_probs=41.3
Q ss_pred cCCCCCeeeEEeeeecccCCCCCCceeEEEEeecCCCCccCCCCeeEEecCC
Q 007567 310 YDAQHPCRSNVAVRKELHTPSSDRSCTHLEFDIAGTGLTYETGDHVGVYCEN 361 (598)
Q Consensus 310 ~d~~~p~~a~v~~~~eL~~~~s~rs~~hie~di~~~~l~Y~~GD~l~V~P~N 361 (598)
|-+..++.+.|+..+.++.+.+...++++.|+. +..+.|+||.++.|.++.
T Consensus 3 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~pGQ~v~l~~~~ 53 (286)
T cd06208 3 YKPKNPLIGKVVSNTRLTGPDAPGEVCHIVIDH-GGKLPYLEGQSIGIIPPG 53 (286)
T ss_pred CCCCCCeEEEEEeceeccCCCCCcceEEEEEeC-CCcccccCCceEEEECCC
Confidence 335677889999999998655557899999997 457999999999998653
No 144
>cd02072 Glm_B12_BD B12 binding domain of glutamate mutase (Glm). Glutamate mutase catalysis the conversion of (S)-glutamate with (2S,3S)-3-methylaspartate. The rearrangement reaction is initiated by the extraction of a hydrogen from the protein-bound substrate by a 5'-desoxyadenosyl radical, which is generated by the homolytic cleavage of the organometallic bond of the cofactor B12. Glm is a heterotetrameric molecule consisting of two alpha and two epsilon polypeptide chains.
Probab=71.80 E-value=69 Score=29.54 Aligned_cols=113 Identities=16% Similarity=0.245 Sum_probs=72.0
Q ss_pred EEEeCCCchHHHHHHHHHHHHHhhcCCceeEEEcCCCCCCcchHHHHhhccCCeEEEEEecCCCCCcchHHHHHHHHHHh
Q 007567 109 IFFGTQTGTAEGFAKALADEARARYDKAIFKVVDIDDYADEEDEYEEKLKKENIVFFFLATYGDGEPTDNAARFYKWFTE 188 (598)
Q Consensus 109 I~YgSqTGtae~~A~~la~~l~~~~~~~~~~v~dl~~~~~~~~~~~~~l~~~~~vIf~~sTyG~Geppdna~~F~~~L~~ 188 (598)
|+-|+-.|..-...+.|-..+-+.. -++|+|+--.. ..+++.+...+++.-+++.|+. .|.--..+++..+.|++
T Consensus 2 vvigtv~gD~HdiGkniv~~~L~~~---GfeVidLG~~v-~~e~~v~aa~~~~adiVglS~L-~t~~~~~~~~~~~~l~~ 76 (128)
T cd02072 2 IVLGVIGSDCHAVGNKILDHAFTEA---GFNVVNLGVLS-PQEEFIDAAIETDADAILVSSL-YGHGEIDCKGLREKCDE 76 (128)
T ss_pred EEEEEeCCchhHHHHHHHHHHHHHC---CCEEEECCCCC-CHHHHHHHHHHcCCCEEEEecc-ccCCHHHHHHHHHHHHH
Confidence 5678888888888877766655432 26788885433 2344555566667767777777 56667888888888876
Q ss_pred hcCCCcccCCceEEEEeecCCcc--hhHhHHHHHHHHHHHhcCCeEeecce
Q 007567 189 QKEGGEWLQKLKYGVFGLGNRQY--EHFNKIAKVVDEILANQGAKRLVPVG 237 (598)
Q Consensus 189 ~~~~~~~l~~~~yaVFGLGds~Y--~~Fn~~~k~ld~~L~~lGA~ri~~~g 237 (598)
. .+...+ |+.=|.-.- +.+ ....++|+++|..++++.|
T Consensus 77 ~-----gl~~v~--vivGG~~~i~~~d~----~~~~~~L~~~Gv~~vf~pg 116 (128)
T cd02072 77 A-----GLKDIL--LYVGGNLVVGKQDF----EDVEKRFKEMGFDRVFAPG 116 (128)
T ss_pred C-----CCCCCe--EEEECCCCCChhhh----HHHHHHHHHcCCCEEECcC
Confidence 3 244433 443343211 111 2244678999999999875
No 145
>TIGR01501 MthylAspMutase methylaspartate mutase, S subunit. This model represents the S (sigma) subunit of methylaspartate mutase (glutamate mutase), a cobalamin-dependent enzyme that catalyzes the first step in a pathway of glutamate fermentation.
Probab=68.62 E-value=1e+02 Score=28.67 Aligned_cols=128 Identities=16% Similarity=0.150 Sum_probs=80.1
Q ss_pred EEEEeCCCchHHHHHHHHHHHHHhhcCCceeEEEcCCCCCCcchHHHHhhccCCeEEEEEecCCCCCcchHHHHHHHHHH
Q 007567 108 TIFFGTQTGTAEGFAKALADEARARYDKAIFKVVDIDDYADEEDEYEEKLKKENIVFFFLATYGDGEPTDNAARFYKWFT 187 (598)
Q Consensus 108 ~I~YgSqTGtae~~A~~la~~l~~~~~~~~~~v~dl~~~~~~~~~~~~~l~~~~~vIf~~sTyG~Geppdna~~F~~~L~ 187 (598)
.|+-|+-.|..-...+.+-..+-+.. -++|+|+=-.. ..+++.+...+++.-++++|+. .|.--..++++.+.|+
T Consensus 3 ~vvigtv~~D~HdiGk~iv~~~l~~~---GfeVi~LG~~v-~~e~~v~aa~~~~adiVglS~l-~~~~~~~~~~~~~~l~ 77 (134)
T TIGR01501 3 TIVLGVIGSDCHAVGNKILDHAFTNA---GFNVVNLGVLS-PQEEFIKAAIETKADAILVSSL-YGHGEIDCKGLRQKCD 77 (134)
T ss_pred eEEEEEecCChhhHhHHHHHHHHHHC---CCEEEECCCCC-CHHHHHHHHHHcCCCEEEEecc-cccCHHHHHHHHHHHH
Confidence 46668888888888877665554332 25788885433 2344556666777777777777 5766778888888887
Q ss_pred hhcCCCcccCCceEEEEeecCCcchhHhHHHHHHHHHHHhcCCeEeecceeccCCCCchHHHHHHHHH
Q 007567 188 EQKEGGEWLQKLKYGVFGLGNRQYEHFNKIAKVVDEILANQGAKRLVPVGLGDDDQCIEDDFSAWREL 255 (598)
Q Consensus 188 ~~~~~~~~l~~~~yaVFGLGds~Y~~Fn~~~k~ld~~L~~lGA~ri~~~g~gD~~~~~e~~f~~W~~~ 255 (598)
+. .+.+.. -++| |.-....=. -..+.++|+++|..++++.+. .-+++..|..+
T Consensus 78 ~~-----gl~~~~-vivG-G~~vi~~~d--~~~~~~~l~~~Gv~~vF~pgt------~~~~iv~~l~~ 130 (134)
T TIGR01501 78 EA-----GLEGIL-LYVG-GNLVVGKQD--FPDVEKRFKEMGFDRVFAPGT------PPEVVIADLKK 130 (134)
T ss_pred HC-----CCCCCE-EEec-CCcCcChhh--hHHHHHHHHHcCCCEEECcCC------CHHHHHHHHHH
Confidence 64 345544 3444 432221100 123456889999999997753 23566677554
No 146
>cd00578 L-fuc_L-ara-isomerases L-fucose isomerase (FucIase) and L-arabinose isomerase (AI) family; composed of FucIase, AI and similar proteins. FucIase converts L-fucose, an aldohexose, to its ketose form, which prepares it for aldol cleavage (similar to the isomerization of glucose in glycolysis). L-fucose (or 6-deoxy-L-galactose) is found in various oligo- and polysaccharides in mammals, bacteria and plants. AI catalyzes the isomerization of L-arabinose to L-ribulose, the first reaction in its conversion to D-xylulose-5-phosphate, an intermediate in the pentose phosphate pathway, which allows L-arabinose to be used as a carbon source. AI can also convert D-galactose to D-tagatose at elevated temperatures in the presence of divalent metal ions. D-tagatose, rarely found in nature, is of commercial interest as a low-calorie sugar substitute.
Probab=65.58 E-value=1.1e+02 Score=34.13 Aligned_cols=130 Identities=19% Similarity=0.255 Sum_probs=76.5
Q ss_pred eEEEEEeCCC-------chHHHHHHHHHHHHHhhcCCceeEEEcCCCCCCcchHH---HHhhc--cCCeEEEEEecCCCC
Q 007567 106 KVTIFFGTQT-------GTAEGFAKALADEARARYDKAIFKVVDIDDYADEEDEY---EEKLK--KENIVFFFLATYGDG 173 (598)
Q Consensus 106 ~v~I~YgSqT-------Gtae~~A~~la~~l~~~~~~~~~~v~dl~~~~~~~~~~---~~~l~--~~~~vIf~~sTyG~G 173 (598)
+|.++-+|+. ..+++.++++.+.+++.+ +++++......+.++. .+.+. +-+.+|+.++|||.+
T Consensus 2 ~ig~v~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~----~~vv~~~~~~~~~~~~~~~~~~~~~~~~d~ii~~~~tf~~~ 77 (452)
T cd00578 2 KIGFVTGSQHLYGEELLEQVEEYAREVADLLNELP----VEVVDKPEVTGTPDEARKAAEEFNEANCDGLIVWMHTFGPA 77 (452)
T ss_pred EEEEEEecccccChhHHHHHHHHHHHHHHHHhcCC----ceEEecCcccCCHHHHHHHHHHHhhcCCcEEEEcccccccH
Confidence 4666667766 346666777777665442 4566555444222222 22333 346788889999743
Q ss_pred CcchHHHHHHHHHHhhcCCCcccCCceEEEEeecCC--------cchhHhHHHHHHHHHHHhcCCeEeecceeccCCCCc
Q 007567 174 EPTDNAARFYKWFTEQKEGGEWLQKLKYGVFGLGNR--------QYEHFNKIAKVVDEILANQGAKRLVPVGLGDDDQCI 245 (598)
Q Consensus 174 eppdna~~F~~~L~~~~~~~~~l~~~~yaVFGLGds--------~Y~~Fn~~~k~ld~~L~~lGA~ri~~~g~gD~~~~~ 245 (598)
......++. + ++.+.+++..+. .+..+|+. ..+-..|.++|-+.-+-.|.-+ +...
T Consensus 78 ------~~~~~~~~~-------~-~~Pvll~a~~~~~~~~~~~~~~~s~~g~-~~~~~~l~r~gi~~~~v~g~~~-d~~~ 141 (452)
T cd00578 78 ------KMWIAGLSE-------L-RKPVLLLATQFNREIPDFMNLNQSACGL-REFGNILARLGIPFKVVYGHWK-DEDV 141 (452)
T ss_pred ------HHHHHHHHh-------c-CCCEEEEeCCCCCCCCchhhhhcchhhh-HHHHHHHHHcCCceeEEECCCC-CHHH
Confidence 222233332 2 567888888764 34566644 7788899999988644333322 2345
Q ss_pred hHHHHHHHHH
Q 007567 246 EDDFSAWREL 255 (598)
Q Consensus 246 e~~f~~W~~~ 255 (598)
.+.+..|...
T Consensus 142 ~~~i~~~~ra 151 (452)
T cd00578 142 LRKIESWARA 151 (452)
T ss_pred HHHHHHHHHH
Confidence 6788889764
No 147
>TIGR02667 moaB_proteo molybdenum cofactor biosynthesis protein B, proteobacterial. This model represents the MoaB protein molybdopterin biosynthesis regions in Proteobacteria. This crystallized but incompletely characterized protein is thought to be involved in, though not required for, early steps in molybdopterin biosynthesis. It may bind a molybdopterin precursor. A distinctive conserved motif PCN near the C-terminus helps distinguish this clade from other homologs, including sets of proteins designated MogA.
Probab=61.67 E-value=10 Score=36.27 Aligned_cols=57 Identities=19% Similarity=0.254 Sum_probs=42.7
Q ss_pred cCCceEEEEeecCCcchhHhHHHHHHHHHHHhcCCeEeecceeccCCCCchHHHHHH
Q 007567 196 LQKLKYGVFGLGNRQYEHFNKIAKVVDEILANQGAKRLVPVGLGDDDQCIEDDFSAW 252 (598)
Q Consensus 196 l~~~~yaVFGLGds~Y~~Fn~~~k~ld~~L~~lGA~ri~~~g~gD~~~~~e~~f~~W 252 (598)
+...+++|+=.||+..+.++..+..+..+|++.|++...-....||...+.+.+.+|
T Consensus 2 ~~~~rv~vit~~d~~~~~~d~n~~~l~~~L~~~G~~v~~~~iv~Dd~~~i~~~l~~~ 58 (163)
T TIGR02667 2 FIPLRIAILTVSDTRTEEDDTSGQYLVERLTEAGHRLADRAIVKDDIYQIRAQVSAW 58 (163)
T ss_pred CCccEEEEEEEeCcCCccCCCcHHHHHHHHHHCCCeEEEEEEcCCCHHHHHHHHHHH
Confidence 456899999999999888899999999999999998554333345444455555555
No 148
>PF08357 SEFIR: SEFIR domain; InterPro: IPR013568 This domain is found in IL17 receptors (IL17Rs, e.g. Q60943 from SWISSPROT) and SEF proteins (e.g. Q8QHJ9 from SWISSPROT). The latter are feedback inhibitors of FGF signalling and are also thought to be receptors. Due to its similarity to the TIR domain (IPR000157 from INTERPRO), the SEFIR region is thought to be involved in homotypic interactions with other SEFIR/TIR-domain-containing proteins. Thus, SEFs and IL17Rs may be involved in TOLL/IL1R-like signalling pathways [].
Probab=47.55 E-value=56 Score=30.11 Aligned_cols=64 Identities=17% Similarity=0.283 Sum_probs=38.5
Q ss_pred ceEEEEEeCCCchHHHHHHHHHHHHHhh-cCCceeEEEcCCCCCC-cchHH-HHhhccCCeEEEEEe
Q 007567 105 QKVTIFFGTQTGTAEGFAKALADEARAR-YDKAIFKVVDIDDYAD-EEDEY-EEKLKKENIVFFFLA 168 (598)
Q Consensus 105 ~~v~I~YgSqTGtae~~A~~la~~l~~~-~~~~~~~v~dl~~~~~-~~~~~-~~~l~~~~~vIf~~s 168 (598)
++|.|.|...+-.=++....||+.|.+. |-.+.+...+..+... +-... ...+.+.+.+|+++|
T Consensus 1 ~kVfI~Ys~d~~~h~~~V~~la~~L~~~~g~~V~lD~~~~~~i~~~g~~~W~~~~~~~ad~Vliv~S 67 (150)
T PF08357_consen 1 RKVFISYSHDSEEHKEWVLALAEFLRQNCGIDVILDQWELNEIARQGPPRWMERQIREADKVLIVCS 67 (150)
T ss_pred CeEEEEeCCCCHHHHHHHHHHHHHHHhccCCceeecHHhhcccccCCHHHHHHHHHhcCCEEEEEec
Confidence 4799999997777778899999999887 4222222222222211 12222 245666777666666
No 149
>cd00758 MoCF_BD MoCF_BD: molybdenum cofactor (MoCF) binding domain (BD). This domain is found a variety of proteins involved in biosynthesis of molybdopterin cofactor, like MoaB, MogA, and MoeA. The domain is presumed to bind molybdopterin.
Probab=47.39 E-value=19 Score=32.87 Aligned_cols=53 Identities=9% Similarity=0.159 Sum_probs=37.5
Q ss_pred eEEEEeecCCcc--hhHhHHHHHHHHHHHhcCCeEeecceeccCCCCchHHHHHH
Q 007567 200 KYGVFGLGNRQY--EHFNKIAKVVDEILANQGAKRLVPVGLGDDDQCIEDDFSAW 252 (598)
Q Consensus 200 ~yaVFGLGds~Y--~~Fn~~~k~ld~~L~~lGA~ri~~~g~gD~~~~~e~~f~~W 252 (598)
|++|+-.||.-+ .-++..+..+.++|++.|.+..+.....|+...+.+.+.+|
T Consensus 1 ~v~ii~~G~El~~g~i~d~n~~~l~~~l~~~G~~v~~~~~v~Dd~~~i~~~i~~~ 55 (133)
T cd00758 1 RVAIVTVSDELSQGQIEDTNGPALEALLEDLGCEVIYAGVVPDDADSIRAALIEA 55 (133)
T ss_pred CEEEEEeCccccCCceEEchHHHHHHHHHHCCCEEEEeeecCCCHHHHHHHHHHH
Confidence 578899998775 45788899999999999988665444455444444555544
No 150
>cd05566 PTS_IIB_galactitol PTS_IIB_galactitol: subunit IIB of enzyme II (EII) of the galactitol-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In this system, EII is a galactitol-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain that are expressed on three distinct polypeptide chains, in contrast to other PTS sugar transporters. The three genes encoding these subunits (gatA, gatB, and gatC) comprise the gatCBA operon. Galactitol PTS permease takes up exogenous galactitol, releasing the phosphate ester into the cytoplasm in preparation for oxidation and further metabolism via a modified glycolytic pathway called the tagatose-6-phosphate glycolytic pathway. The IIB domain fold includes a central four-stranded parallel open twisted beta-sheet flanked by alpha-helices on both sides. The seven major PTS systems with this IIB fold include galactitol, chitobiose/lichenan, ascorbate, lactose, mannitol, fructose, and
Probab=45.54 E-value=67 Score=26.86 Aligned_cols=29 Identities=17% Similarity=0.193 Sum_probs=25.5
Q ss_pred ceEEEEEeCCCchHHHHHHHHHHHHHhhc
Q 007567 105 QKVTIFFGTQTGTAEGFAKALADEARARY 133 (598)
Q Consensus 105 ~~v~I~YgSqTGtae~~A~~la~~l~~~~ 133 (598)
++++++.++-.|++..++.+|.+.+.+.+
T Consensus 1 ~~ilivC~~G~~tS~~l~~~i~~~~~~~~ 29 (89)
T cd05566 1 KKILVACGTGVATSTVVASKVKELLKENG 29 (89)
T ss_pred CEEEEECCCCccHHHHHHHHHHHHHHHCC
Confidence 46899999999999999999999997654
No 151
>COG2375 ViuB Siderophore-interacting protein [Inorganic ion transport and metabolism]
Probab=45.49 E-value=97 Score=32.20 Aligned_cols=83 Identities=19% Similarity=0.281 Sum_probs=57.7
Q ss_pred CCCCcccccCCCCCCCCCeEEEEEEEEEeeCCCCCcccCcchHHhhccCCCCCCCCCceEEEEEeCCCccCCCCCCCcEE
Q 007567 489 RLQPRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLCSTWMKNSLPMEKSNDCSWAPIFVRQSNFKLPADAKVPII 568 (598)
Q Consensus 489 ~l~pR~YSIsSsp~~~~~~i~itv~~v~~~~~~g~~~~G~~S~~L~~~~~~~~~~~~~~~~i~v~~s~F~lp~~~~~PiI 568 (598)
+.-+|.|+|.+- +...-++.|-.|-. | ..|.+|+|-.+.++++ .+.|.-+.+.+..|.. -.-++
T Consensus 84 r~~~R~YTiR~~---d~~~~e~~vDfVlH----~--~~gpas~WA~~a~~GD------~l~i~GP~g~~~p~~~-~~~~l 147 (265)
T COG2375 84 RPPQRTYTIRAV---DAAAGELDVDFVLH----G--EGGPASRWARTAQPGD------TLTIMGPRGSLVPPEA-ADWYL 147 (265)
T ss_pred CCCcccceeeee---cccccEEEEEEEEc----C--CCCcchhhHhhCCCCC------EEEEeCCCCCCCCCCC-cceEE
Confidence 445799999854 23344454544421 1 5799999999998875 4555556667666554 45699
Q ss_pred EEeCCCChHhHHHHHHHHh
Q 007567 569 MIGPGTGLAPFRGSWSRTG 587 (598)
Q Consensus 569 mIg~GTGiAPfr~flqer~ 587 (598)
|||==|++==+.+.|.+.-
T Consensus 148 LigDetAlPAIa~iLE~lp 166 (265)
T COG2375 148 LIGDETALPAIARILETLP 166 (265)
T ss_pred EeccccchHHHHHHHHhCC
Confidence 9999999988888887754
No 152
>PF00970 FAD_binding_6: Oxidoreductase FAD-binding domain; InterPro: IPR008333 These sequences contain an oxidoreductase FAD-binding domain. To date, the 3D-structures of the flavoprotein domain of Zea mays (Maize) nitrate reductase [] and of pig NADH:cytochrome b5 reductase [] have been solved. The overall fold is similar to that of ferredoxin:NADP+ reductase []: the FAD-binding domain (N-terminal) has the topology of an anti-parallel beta-barrel, while the NAD(P)-binding domain (C-terminal) has the topology of a classical pyridine dinucleotide-binding fold (i.e. a central parallel beta-sheet flanked by 2 helices on each side).; PDB: 1JB9_A 3LVB_A 3LO8_A 1FRN_A 1FND_A 1BX1_A 1FNC_A 1FNB_A 1BX0_A 1FRQ_A ....
Probab=42.31 E-value=60 Score=27.46 Aligned_cols=38 Identities=21% Similarity=0.369 Sum_probs=28.6
Q ss_pred eEEeeeecccCCCCCCceeEEEEeecC--CCCccCCCCeeEEecC
Q 007567 318 SNVAVRKELHTPSSDRSCTHLEFDIAG--TGLTYETGDHVGVYCE 360 (598)
Q Consensus 318 a~v~~~~eL~~~~s~rs~~hie~di~~--~~l~Y~~GD~l~V~P~ 360 (598)
|+|+..++++ .++++++|.+++ ..+.|+||.|+.|.-.
T Consensus 2 ~~v~~~~~~s-----~~~~~~~~~~~~~~~~~~~~pGQ~v~v~~~ 41 (99)
T PF00970_consen 2 AKVVEIEELS-----PDVKIFRFKLPDPDQKLDFKPGQFVSVRVP 41 (99)
T ss_dssp EEEEEEEEES-----SSEEEEEEEESSTTTT-SSTTT-EEEEEEE
T ss_pred EEEEEEEEeC-----CCeEEEEEEECCCCcccccCcceEEEEEEc
Confidence 6788888886 358889998874 3478999999999877
No 153
>KOG4530 consensus Predicted flavoprotein [General function prediction only]
Probab=40.65 E-value=59 Score=31.20 Aligned_cols=53 Identities=19% Similarity=0.315 Sum_probs=32.1
Q ss_pred hccCCeEEEEEecCCCCCcchHHHHHHHHHHhhcCCCcccCCceEEEEeecCCcc
Q 007567 157 LKKENIVFFFLATYGDGEPTDNAARFYKWFTEQKEGGEWLQKLKYGVFGLGNRQY 211 (598)
Q Consensus 157 l~~~~~vIf~~sTyG~Geppdna~~F~~~L~~~~~~~~~l~~~~yaVFGLGds~Y 211 (598)
+...+.++|+++-| ++..|.--+.-++||-..= .+...--+.|+-+|=|+.+|
T Consensus 84 i~~aD~ivFvtPqY-N~gypA~LKNAlD~lyheW-~gKPalivSyGGhGGg~c~~ 136 (199)
T KOG4530|consen 84 ILEADSIVFVTPQY-NFGYPAPLKNALDWLYHEW-AGKPALIVSYGGHGGGRCQY 136 (199)
T ss_pred HhhcceEEEecccc-cCCCchHHHHHHHHhhhhh-cCCceEEEEecCCCCchHHH
Confidence 34568899999999 5666655555667776421 11122235566666666665
No 154
>cd02067 B12-binding B12 binding domain (B12-BD). This domain binds different cobalamid derivates, like B12 (adenosylcobamide) or methylcobalamin or methyl-Co(III) 5-hydroxybenzimidazolylcobamide, it is found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase. Cobalamin undergoes a conformational change on binding the protein; the dimethylbenzimidazole group, which is coordinated to the cobalt in the free cofactor, moves away from the corrin and is replaced by a histidine contributed by the protein. The sequence Asp-X-His-X-X-Gly, which contains this histidine ligand, is conserved in many cobalamin-binding proteins.
Probab=40.12 E-value=2.6e+02 Score=24.55 Aligned_cols=109 Identities=17% Similarity=0.129 Sum_probs=62.4
Q ss_pred EEEeCCCchHHHHHHHHHHHHHhhcCCceeEEEcCCCCCCcchHHHHhhccCCeEEEEEecCCCCCcchHHHHHHHHHHh
Q 007567 109 IFFGTQTGTAEGFAKALADEARARYDKAIFKVVDIDDYADEEDEYEEKLKKENIVFFFLATYGDGEPTDNAARFYKWFTE 188 (598)
Q Consensus 109 I~YgSqTGtae~~A~~la~~l~~~~~~~~~~v~dl~~~~~~~~~~~~~l~~~~~vIf~~sTyG~Geppdna~~F~~~L~~ 188 (598)
|+.++--|..-.+...+...+-++.+ ++++++..... .+++.+.+.+.+.-+++.|.+ .+.....+.++.+.+++
T Consensus 2 vl~~~~~~e~H~lG~~~~~~~l~~~G---~~V~~lg~~~~-~~~l~~~~~~~~pdvV~iS~~-~~~~~~~~~~~i~~l~~ 76 (119)
T cd02067 2 VVIATVGGDGHDIGKNIVARALRDAG---FEVIDLGVDVP-PEEIVEAAKEEDADAIGLSGL-LTTHMTLMKEVIEELKE 76 (119)
T ss_pred EEEEeeCCchhhHHHHHHHHHHHHCC---CEEEECCCCCC-HHHHHHHHHHcCCCEEEEecc-ccccHHHHHHHHHHHHH
Confidence 56677777777777666655554322 46777764432 333444444444434433433 45566788888888875
Q ss_pred hcCCCcccCCceEEEEeecCCcchhHhHHHHHHHHHHHhcCCeEeecce
Q 007567 189 QKEGGEWLQKLKYGVFGLGNRQYEHFNKIAKVVDEILANQGAKRLVPVG 237 (598)
Q Consensus 189 ~~~~~~~l~~~~yaVFGLGds~Y~~Fn~~~k~ld~~L~~lGA~ri~~~g 237 (598)
.. ..+.++.|=|. +++... +.++++|+..+++-+
T Consensus 77 ~~-----~~~~~i~vGG~------~~~~~~----~~~~~~G~D~~~~~~ 110 (119)
T cd02067 77 AG-----LDDIPVLVGGA------IVTRDF----KFLKEIGVDAYFGPA 110 (119)
T ss_pred cC-----CCCCeEEEECC------CCChhH----HHHHHcCCeEEECCH
Confidence 31 13455555552 233222 578899999887644
No 155
>cd05563 PTS_IIB_ascorbate PTS_IIB_ascorbate: subunit IIB of enzyme II (EII) of the L-ascorbate-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In this system, EII is an L-ascorbate-specific permease with two cytoplasmic subunits (IIA and IIB) and a transmembrane channel IIC subunit. Subunits IIA, IIB, and IIC are encoded by the sgaA, sgaB, and sgaT genes of the E. coli sgaTBA operon. In some bacteria, the IIB (SgaB) domain is fused C-terminal to the IIA (SgaT) domain. The IIB domain fold includes a central four-stranded parallel open twisted beta-sheet flanked by alpha-helices on both sides. The seven major PTS systems with this IIB fold include ascorbate, chitobiose/lichenan, lactose, galactitol, mannitol, fructose, and a sensory system with similarity to the bacterial bgl system.
Probab=39.88 E-value=84 Score=26.06 Aligned_cols=40 Identities=13% Similarity=0.105 Sum_probs=29.5
Q ss_pred eEEEEEeCCCchHHHHHHHHHHHHHhhcCCceeEEEcCCC
Q 007567 106 KVTIFFGTQTGTAEGFAKALADEARARYDKAIFKVVDIDD 145 (598)
Q Consensus 106 ~v~I~YgSqTGtae~~A~~la~~l~~~~~~~~~~v~dl~~ 145 (598)
+++|+-++-.||+..++.+|.+.+.+.+-...+...++++
T Consensus 1 kilvvC~~G~~tS~ll~~kl~~~f~~~~i~~~~~~~~~~~ 40 (86)
T cd05563 1 KILAVCGSGLGSSLMLKMNVEKVLKELGIEAEVEHTDLGS 40 (86)
T ss_pred CEEEECCCCccHHHHHHHHHHHHHHHCCCcEEEEEecccc
Confidence 4788999999999999999999997655333334445544
No 156
>TIGR01917 gly_red_sel_B glycine reductase, selenoprotein B. Glycine reductase is a complex with two selenoprotein subunits, A and B. This model represents the glycine reductase selenoprotein B. Closely related to it, but excluded from this model, are selenoprotein B subunits of betaine reductase and sarcosine reductase. All contain selenocysteine incorporated during translation at a specific UGA codon.
Probab=39.27 E-value=2.5e+02 Score=31.22 Aligned_cols=97 Identities=24% Similarity=0.249 Sum_probs=62.0
Q ss_pred chHHHHHHHHHHHHHhhcCCceeEEEcCCCCCCcchHHHHhhccCCeEEEEEecCCCCCcchHHHHHHHHHHhhcCCCcc
Q 007567 116 GTAEGFAKALADEARARYDKAIFKVVDIDDYADEEDEYEEKLKKENIVFFFLATYGDGEPTDNAARFYKWFTEQKEGGEW 195 (598)
Q Consensus 116 Gtae~~A~~la~~l~~~~~~~~~~v~dl~~~~~~~~~~~~~l~~~~~vIf~~sTyG~Geppdna~~F~~~L~~~~~~~~~ 195 (598)
.++++||..|+++|++.+ .| .++++||. |-.+..+.-..+.+++.
T Consensus 319 ~~a~~~g~eIa~~Lk~dg------------VD---------------AvILtstC--gtCtrcga~m~keiE~~------ 363 (431)
T TIGR01917 319 ANSKQFAKEFSKELLAAG------------VD---------------AVILTSTU--GTCTRCGATMVKEIERA------ 363 (431)
T ss_pred HHHHHHHHHHHHHHHHcC------------CC---------------EEEEcCCC--CcchhHHHHHHHHHHHc------
Confidence 357778888888877643 11 57888998 66788888888888752
Q ss_pred cCCceEEEEeecCCcchhHhHHHHHHHHHHHhcCCeEeec-----ceeccCCCCchHHHHHHHHHHHHHHHhh
Q 007567 196 LQKLKYGVFGLGNRQYEHFNKIAKVVDEILANQGAKRLVP-----VGLGDDDQCIEDDFSAWRELVWPELDNL 263 (598)
Q Consensus 196 l~~~~yaVFGLGds~Y~~Fn~~~k~ld~~L~~lGA~ri~~-----~g~gD~~~~~e~~f~~W~~~l~~~L~~~ 263 (598)
|....+++. +-..-+..|+.||+| .-+||-....++...-=+.-+-.+|+.+
T Consensus 364 --GIPvV~i~~--------------~~pI~~~vGanRiv~~~~i~~PlGnp~l~~~~e~~~rr~~v~~AL~aL 420 (431)
T TIGR01917 364 --GIPVVHICT--------------VTPIALTVGANRIIPAIAIPHPLGDPALDAAEEKALRRKIVEKALKAL 420 (431)
T ss_pred --CCCEEEEee--------------chhHHHhcCCCceecCCCCCCCCCCCCCChhHHHHHHHHHHHHHHHHh
Confidence 555555551 122334579999987 3356666556655444444455666654
No 157
>TIGR00177 molyb_syn molybdenum cofactor synthesis domain. The Drosophila protein cinnamon, the Arabidopsis protein cnx1, and rat protein gephyrin each have one domain like MoeA and one like MoaB and Mog. These domains are, however, distantly related to each other, as captured by this model. Gephyrin is unusual in that it seems to be a tubulin-binding neuroprotein involved in the clustering of both blycine receptors and GABA receptors, rather than a protein of molybdenum cofactor biosynthesis.
Probab=38.06 E-value=31 Score=32.08 Aligned_cols=54 Identities=13% Similarity=0.141 Sum_probs=39.1
Q ss_pred eEEEEeecCCcc---------hhHhHHHHHHHHHHHhcCCeEeecceeccCCCCchHHHHHHH
Q 007567 200 KYGVFGLGNRQY---------EHFNKIAKVVDEILANQGAKRLVPVGLGDDDQCIEDDFSAWR 253 (598)
Q Consensus 200 ~yaVFGLGds~Y---------~~Fn~~~k~ld~~L~~lGA~ri~~~g~gD~~~~~e~~f~~W~ 253 (598)
+++|+-.||.-+ .-++..+..+.++|+++|++-..-....|+...+.+.+.+|.
T Consensus 2 rv~ii~tGdEl~~~~~~~~~g~i~d~n~~~l~~~l~~~G~~v~~~~~v~Dd~~~i~~~l~~~~ 64 (144)
T TIGR00177 2 RVAVISTGDELVEPGQPLEPGQIYDSNGPLLAALLEEAGFNVSRLGIVPDDPEEIREILRKAV 64 (144)
T ss_pred EEEEEEcCcccccCCCCCCCCeEEeCcHHHHHHHHHHCCCeEEEEeecCCCHHHHHHHHHHHH
Confidence 678888888765 246777889999999999986655555666555666666663
No 158
>cd06578 HemD Uroporphyrinogen-III synthase (HemD) catalyzes the asymmetrical cyclization of tetrapyrrole (linear) to uroporphyrinogen-III, the fourth step in the biosynthesis of heme. This ubiquitous enzyme is present in eukaryotes, bacteria and archaea. Mutations in the human uroporphyrinogen-III synthase gene cause congenital erythropoietic porphyria, a recessive inborn error of metabolism also known as Gunther disease.
Probab=37.39 E-value=1.9e+02 Score=28.07 Aligned_cols=51 Identities=16% Similarity=0.277 Sum_probs=35.9
Q ss_pred EEEEEecCCCCCcchHHHHHHHHHHhhcCCCcccCCceEEEEeecCCcchhHhHHHHHHHHHHHhcCCeEeec
Q 007567 163 VFFFLATYGDGEPTDNAARFYKWFTEQKEGGEWLQKLKYGVFGLGNRQYEHFNKIAKVVDEILANQGAKRLVP 235 (598)
Q Consensus 163 vIf~~sTyG~Geppdna~~F~~~L~~~~~~~~~l~~~~yaVFGLGds~Y~~Fn~~~k~ld~~L~~lGA~ri~~ 235 (598)
+|+++|.. .++.|++++.+.. ...+.+.++.++| ....+.|+++|.+.++.
T Consensus 176 ~iiftS~~-------~v~~f~~~~~~~~--~~~~~~~~~~aig-------------~~t~~~l~~~g~~~~~~ 226 (239)
T cd06578 176 AVLFTSPS-------TVRNLLELLGKEG--RALLKNVKIAAIG-------------PRTAEALRELGLKVVIV 226 (239)
T ss_pred EEEEeCHH-------HHHHHHHHHhhhh--hhhhcCCeEEEEC-------------HHHHHHHHHcCCCceee
Confidence 55566644 6888999887532 2356777887776 77888888899876653
No 159
>PRK09622 porA pyruvate flavodoxin oxidoreductase subunit alpha; Reviewed
Probab=36.70 E-value=3.7e+02 Score=29.59 Aligned_cols=110 Identities=16% Similarity=0.119 Sum_probs=61.6
Q ss_pred CCceEEEEEeCCCchHHHHHHHHHHHHHhhcCCceeEEEcCCCCC-CcchHHHHhhccCCeEEEEEecCCCCCcchHHHH
Q 007567 103 GKQKVTIFFGTQTGTAEGFAKALADEARARYDKAIFKVVDIDDYA-DEEDEYEEKLKKENIVFFFLATYGDGEPTDNAAR 181 (598)
Q Consensus 103 ~~~~v~I~YgSqTGtae~~A~~la~~l~~~~~~~~~~v~dl~~~~-~~~~~~~~~l~~~~~vIf~~sTyG~Geppdna~~ 181 (598)
...-+.|.|||..+++++.++.+.+ ++ ..+.++++.-+. .+.+.+.+.+.+.+.++++=-++-.|..-.-..+
T Consensus 267 dad~~iV~~Gs~~~~a~ea~~~L~~----~G--~kvgvi~~r~~~Pfp~~~l~~~l~~~k~VvVvE~~~~~Gg~G~l~~e 340 (407)
T PRK09622 267 DAEVAIVALGTTYESAIVAAKEMRK----EG--IKAGVATIRVLRPFPYERLGQALKNLKALAILDRSSPAGAMGALFNE 340 (407)
T ss_pred CCCEEEEEEChhHHHHHHHHHHHHh----CC--CCeEEEEeeEhhhCCHHHHHHHHhcCCEEEEEeCCCCCCCccHHHHH
Confidence 3457888999999998888776643 33 345566665543 2333344455566666766555544444345555
Q ss_pred HHHHHHhhcCCCcccCCceE---EEEeecCCcc--hhHhHHHHHHHH
Q 007567 182 FYKWFTEQKEGGEWLQKLKY---GVFGLGNRQY--EHFNKIAKVVDE 223 (598)
Q Consensus 182 F~~~L~~~~~~~~~l~~~~y---aVFGLGds~Y--~~Fn~~~k~ld~ 223 (598)
+...|..... +.... .++|+|.+.+ +..-++.+.+.+
T Consensus 341 v~~al~~~~~-----~~~~~v~~~~~g~gG~~~t~~~i~~~~~~l~~ 382 (407)
T PRK09622 341 VTSAVYQTQG-----TKHPVVSNYIYGLGGRDMTIAHLCEIFEELNE 382 (407)
T ss_pred HHHHHhccCc-----CCCceEeeeEECCCCCCCCHHHHHHHHHHHHh
Confidence 5555542110 01223 5678877776 445444444443
No 160
>cd00886 MogA_MoaB MogA_MoaB family. Members of this family are involved in biosynthesis of the molybdenum cofactor (MoCF) an essential cofactor of a diverse group of redox enzymes. MoCF biosynthesis is an evolutionarily conserved pathway present in eubacteria, archaea, and eukaryotes. MoCF contains a tricyclic pyranopterin, termed molybdopterin (MPT). MogA, together with MoeA, is responsible for the metal incorporation into MPT, the third step in MoCF biosynthesis. The plant homolog Cnx1 is a MoeA-MogA fusion protein. The mammalian homolog gephyrin is a MogA-MoeA fusion protein, that plays a critical role in postsynaptic anchoring of inhibitory glycine receptors and major GABAa receptor subtypes. In contrast, MoaB shows high similarity to MogA, but little is known about its physiological role. All well studied members of this family form highly stable trimers.
Probab=36.57 E-value=45 Score=31.23 Aligned_cols=54 Identities=19% Similarity=0.321 Sum_probs=39.0
Q ss_pred ceEEEEeecCCcc--hhHhHHHHHHHHHHHhcCCeEeecceeccCCCCchHHHHHH
Q 007567 199 LKYGVFGLGNRQY--EHFNKIAKVVDEILANQGAKRLVPVGLGDDDQCIEDDFSAW 252 (598)
Q Consensus 199 ~~yaVFGLGds~Y--~~Fn~~~k~ld~~L~~lGA~ri~~~g~gD~~~~~e~~f~~W 252 (598)
++++|+-.||.-+ .-++..+..+.++|++.|++........||...+.+.+.+|
T Consensus 1 ~~~~ii~~~~e~~~g~i~d~n~~~l~~~l~~~G~~v~~~~~v~Dd~~~i~~~l~~~ 56 (152)
T cd00886 1 LRAAVLTVSDTRSAGEAEDRSGPALVELLEEAGHEVVAYEIVPDDKDEIREALIEW 56 (152)
T ss_pred CEEEEEEEcCcccCCCCccchHHHHHHHHHHcCCeeeeEEEcCCCHHHHHHHHHHH
Confidence 4788999999877 46888888999999999998665444555544444445444
No 161
>PRK15083 PTS system mannitol-specific transporter subunit IICBA; Provisional
Probab=35.24 E-value=1.8e+02 Score=34.16 Aligned_cols=31 Identities=13% Similarity=0.076 Sum_probs=27.2
Q ss_pred CCceEEEEEeCCCchHHHHHHHHHHHHHhhc
Q 007567 103 GKQKVTIFFGTQTGTAEGFAKALADEARARY 133 (598)
Q Consensus 103 ~~~~v~I~YgSqTGtae~~A~~la~~l~~~~ 133 (598)
..+++.|+.++--||+..++..|.+.+++.+
T Consensus 377 ~~kkilvVC~sG~GsS~m~~~~l~~~l~~~~ 407 (639)
T PRK15083 377 HVRKIIVACDAGMGSSAMGAGVLRKKVQDAG 407 (639)
T ss_pred ccCEEEEECCCCccHHHHHHHHHHHHHHHcC
Confidence 3578999999999999999999999998765
No 162
>cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc
Probab=33.78 E-value=81 Score=31.05 Aligned_cols=32 Identities=31% Similarity=0.429 Sum_probs=27.4
Q ss_pred cccCCceEEEEeecCCcchhHhHHHHHHHHHHHhcCCeEe
Q 007567 194 EWLQKLKYGVFGLGNRQYEHFNKIAKVVDEILANQGAKRL 233 (598)
Q Consensus 194 ~~l~~~~yaVFGLGds~Y~~Fn~~~k~ld~~L~~lGA~ri 233 (598)
..+++++++|.|+|+ +|+.+-++|.+.|++-+
T Consensus 24 ~~l~gk~v~I~G~G~--------vG~~~A~~L~~~G~~Vv 55 (200)
T cd01075 24 DSLEGKTVAVQGLGK--------VGYKLAEHLLEEGAKLI 55 (200)
T ss_pred CCCCCCEEEEECCCH--------HHHHHHHHHHHCCCEEE
Confidence 468999999999883 78888999999999755
No 163
>PF06283 ThuA: Trehalose utilisation; PDB: 4E5V_A 1T0B_A.
Probab=33.39 E-value=1.6e+02 Score=29.08 Aligned_cols=75 Identities=28% Similarity=0.353 Sum_probs=39.2
Q ss_pred eEEEEEeCCCc----hHHHHHHHHHHHHHhhcCCceeEEEc-CCCCCCcchHHHHhhccCCeEEEEEecCCCCCcchHHH
Q 007567 106 KVTIFFGTQTG----TAEGFAKALADEARARYDKAIFKVVD-IDDYADEEDEYEEKLKKENIVFFFLATYGDGEPTDNAA 180 (598)
Q Consensus 106 ~v~I~YgSqTG----tae~~A~~la~~l~~~~~~~~~~v~d-l~~~~~~~~~~~~~l~~~~~vIf~~sTyG~Geppdna~ 180 (598)
||+|++|.-.| ..+...+.|++.+++.. ...+.+.+ .+.+. .+.|...+++||.... |+--.++..+
T Consensus 1 kvLi~~g~~~~~~h~~~~~~~~~l~~ll~~~~-~~~v~~~~~~~~~~------~~~L~~~Dvvv~~~~~-~~~l~~~~~~ 72 (217)
T PF06283_consen 1 KVLIFSGGWSGYRHDSIPAAKKALAQLLEESE-GFEVTVTEDPDDLT------PENLKGYDVVVFYNTG-GDELTDEQRA 72 (217)
T ss_dssp EEEEEES-SHHHCSHHHHHHHHHHHHHHHHTT-CEEEEECCSGGCTS------HHCHCT-SEEEEE-SS-CCGS-HHHHH
T ss_pred CEEEEeCCcCCccCccHHHHHHHHHHHhccCC-CEEEEEEeCcccCC------hhHhcCCCEEEEECCC-CCcCCHHHHH
Confidence 68899988433 22355666666665332 23333322 22222 2468888977776555 2222455666
Q ss_pred HHHHHHHh
Q 007567 181 RFYKWFTE 188 (598)
Q Consensus 181 ~F~~~L~~ 188 (598)
.|.+++++
T Consensus 73 al~~~v~~ 80 (217)
T PF06283_consen 73 ALRDYVEN 80 (217)
T ss_dssp HHHHHHHT
T ss_pred HHHHHHHc
Confidence 77788774
No 164
>PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related. All contain a glycine-rich region located in the central section of these enzymes, this region corresponds to the NAD-binding domain. The catalytic domain is described in IPR006139 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0048037 cofactor binding, 0055114 oxidation-reduction process; PDB: 3JTM_A 3NAQ_B 3N7U_J 3KB6_B 3GG9_A 1QP8_B 2CUK_C 2W2L_D 2W2K_A 1WWK_A ....
Probab=32.72 E-value=88 Score=29.98 Aligned_cols=34 Identities=26% Similarity=0.450 Sum_probs=27.7
Q ss_pred CcccCCceEEEEeecCCcchhHhHHHHHHHHHHHhcCCeEee
Q 007567 193 GEWLQKLKYGVFGLGNRQYEHFNKIAKVVDEILANQGAKRLV 234 (598)
Q Consensus 193 ~~~l~~~~yaVFGLGds~Y~~Fn~~~k~ld~~L~~lGA~ri~ 234 (598)
...+.|++++|+|+| ..|+.+.++|+.+|++-++
T Consensus 31 ~~~l~g~tvgIiG~G--------~IG~~vA~~l~~fG~~V~~ 64 (178)
T PF02826_consen 31 GRELRGKTVGIIGYG--------RIGRAVARRLKAFGMRVIG 64 (178)
T ss_dssp BS-STTSEEEEESTS--------HHHHHHHHHHHHTT-EEEE
T ss_pred ccccCCCEEEEEEEc--------CCcCeEeeeeecCCceeEE
Confidence 456999999999977 5899999999999997654
No 165
>cd06200 SiR_like1 Cytochrome p450- like alpha subunits of E. coli sulfite reductase (SiR) multimerize with beta subunits to catalyze the NADPH dependent reduction of sulfite to sulfide. Beta subunits have an Fe4S4 cluster and a siroheme, while the alpha subunits (cysJ gene) are of the cytochrome p450 (CyPor) family having FAD and FMN as prosthetic groups and utilizing NADPH. Cypor (including cyt -450 reductase, nitric oxide synthase, and methionine synthase reductase) are ferredoxin reductase (FNR)-like proteins with an additional N-terminal FMN domain and a connecting sub-domain inserted within the flavin binding portion of the FNR-like domain. The connecting domain orients the N-terminal FMN domain with the C-terminal FNR domain. NADPH cytochrome p450 reductase (CYPOR) serves as an electron donor in several oxygenase systems and is a component of nitric oxide synthases and methionine synthase reductases. CYPOR transfers two electrons from NADPH to the heme of cytochrome p450 via FAD
Probab=32.55 E-value=70 Score=32.31 Aligned_cols=36 Identities=19% Similarity=0.295 Sum_probs=28.1
Q ss_pred ccCCCCC-CceeEEEEeecCCCCccCCCCeeEEecCC
Q 007567 326 LHTPSSD-RSCTHLEFDIAGTGLTYETGDHVGVYCEN 361 (598)
Q Consensus 326 L~~~~s~-rs~~hie~di~~~~l~Y~~GD~l~V~P~N 361 (598)
+.++++. ..+++|+|+.++....|+||.++.|.+.+
T Consensus 8 ~~~~~~~~~~v~~l~l~~~~~~~~f~pGQ~v~l~~~~ 44 (245)
T cd06200 8 LLNPGSQGAPLWRLRLTPPDAGAQWQAGDIAEIGPRH 44 (245)
T ss_pred ecCCCCCCCceEEEEEecCCCCCCccCCcEEEecCCC
Confidence 4445543 37999999987567899999999999865
No 166
>PF06753 Bradykinin: Bradykinin; InterPro: IPR009608 This family consists of several bradykinin sequences. The skins of anuran amphibians, in addition to mucus glands, contain highly specialised poison glands, which, in reaction to stress or attack, exude a complex noxious cocktail of biologically active molecules. These secretions often contain a plethora of peptides among which bradykinin or structural variants have been identified [].; GO: 0005179 hormone activity, 0006950 response to stress, 0005576 extracellular region
Probab=31.75 E-value=11 Score=22.44 Aligned_cols=10 Identities=50% Similarity=1.295 Sum_probs=7.9
Q ss_pred CChHhHHHHH
Q 007567 574 TGLAPFRGSW 583 (598)
Q Consensus 574 TGiAPfr~fl 583 (598)
+|++||||=.
T Consensus 6 ~gftpfrgkf 15 (19)
T PF06753_consen 6 PGFTPFRGKF 15 (19)
T ss_pred CCCCcccccc
Confidence 6899999843
No 167
>PF03908 Sec20: Sec20; InterPro: IPR005606 Sec20 is a membrane glycoprotein associated with secretory pathway.
Probab=31.32 E-value=47 Score=28.51 Aligned_cols=19 Identities=16% Similarity=0.289 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHHHHhhhhc
Q 007567 58 LTTSIAVLIGCVVVFILRR 76 (598)
Q Consensus 58 ~~~~~~~~~~~~~~~~~~~ 76 (598)
+..+++++++|+.|.+|||
T Consensus 73 i~~~~~~f~~~v~yI~~rR 91 (92)
T PF03908_consen 73 IFFAFLFFLLVVLYILWRR 91 (92)
T ss_pred HHHHHHHHHHHHHHHhhhc
Confidence 3356777888888888876
No 168
>cd00133 PTS_IIB PTS_IIB: subunit IIB of enzyme II (EII) is the central energy-coupling domain of the phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In the multienzyme PTS complex, EII is a carbohydrate-specific permease consisting of two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. The IIB domain fold includes a central four-stranded parallel open twisted beta-sheet flanked by alpha-helices on both sides. The seven major PTS systems with this IIB fold include chitobiose/lichenan, ascorbate, lactose, galactitol, mannitol, fructose, and a sensory system with similarity to the bacterial bgl system. The PTS is found only in bacteria, where it catalyzes the transport and phosphorylation of numerous monosaccharides, disaccharides, polyols, amino sugars, and other sugar derivatives. The four proteins (domains) forming the PTS phosphorylation cascade (EI, HPr, EIIA, and EIIB), can phosphorylate or interact with numerous non-PTS proteins thereby r
Probab=31.24 E-value=97 Score=24.62 Aligned_cols=28 Identities=21% Similarity=0.339 Sum_probs=23.1
Q ss_pred eEEEEEeCCCchHHHHHHHHHHHHHhhc
Q 007567 106 KVTIFFGTQTGTAEGFAKALADEARARY 133 (598)
Q Consensus 106 ~v~I~YgSqTGtae~~A~~la~~l~~~~ 133 (598)
+++++-++-.|++..++.+|.+.+.+.+
T Consensus 1 ~il~vc~~G~~~s~~l~~~l~~~~~~~~ 28 (84)
T cd00133 1 KILVVCGSGIGSSSMLAEKLEKAAKELG 28 (84)
T ss_pred CEEEECCCcHhHHHHHHHHHHHHHHHCC
Confidence 3667777777899999999999998765
No 169
>cd05211 NAD_bind_Glu_Leu_Phe_Val NAD(P) binding domain of glutamate dehydrogenase, leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NAD(P)+. This subfamily includes glutamate, leucine, phenylalanine, and valine DHs. Glutamate DH is a multi-domain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. As in other NAD+-dependent DHs, monomers in this family have 2 domains separated by a deep cleft. Here the c-terminal domain contains a modified NAD-binding Rossmann fold with 7 rather than the usual 6 beta strands and one strand anti-parral
Probab=30.26 E-value=74 Score=31.90 Aligned_cols=33 Identities=36% Similarity=0.487 Sum_probs=27.2
Q ss_pred cccCCceEEEEeecCCcchhHhHHHHHHHHHHHhcCCeEee
Q 007567 194 EWLQKLKYGVFGLGNRQYEHFNKIAKVVDEILANQGAKRLV 234 (598)
Q Consensus 194 ~~l~~~~yaVFGLGds~Y~~Fn~~~k~ld~~L~~lGA~ri~ 234 (598)
..|++++++|.|+|| +|..+-+.|.++|++.+.
T Consensus 19 ~~l~g~~vaIqGfGn--------VG~~~a~~L~~~G~~vV~ 51 (217)
T cd05211 19 DSLEGLTVAVQGLGN--------VGWGLAKKLAEEGGKVLA 51 (217)
T ss_pred CCcCCCEEEEECCCH--------HHHHHHHHHHHcCCEEEE
Confidence 468999999999774 778888889999988654
No 170
>PRK09004 FMN-binding protein MioC; Provisional
Probab=29.93 E-value=3.4e+02 Score=25.17 Aligned_cols=92 Identities=16% Similarity=0.107 Sum_probs=54.7
Q ss_pred CeEEEEEecCCCCCcchHHHHHHHHHHhhcC------------CCcccCCceEEEEeecCCcc--hhHhHHHHHHHHHHH
Q 007567 161 NIVFFFLATYGDGEPTDNAARFYKWFTEQKE------------GGEWLQKLKYGVFGLGNRQY--EHFNKIAKVVDEILA 226 (598)
Q Consensus 161 ~~vIf~~sTyG~Geppdna~~F~~~L~~~~~------------~~~~l~~~~yaVFGLGds~Y--~~Fn~~~k~ld~~L~ 226 (598)
++.|+..|++| |++.+.+.|.+... ....+..-.+.||++ ++| ...-.-++.+.++|+
T Consensus 3 ~i~I~ygS~tG------nae~~A~~l~~~~~~~g~~~~~~~~~~~~~l~~~~~li~~~--sT~G~Ge~p~~~~~f~~~L~ 74 (146)
T PRK09004 3 DITLISGSTLG------GAEYVADHLAEKLEEAGFSTETLHGPLLDDLSASGLWLIVT--STHGAGDLPDNLQPFFEELQ 74 (146)
T ss_pred eEEEEEEcCch------HHHHHHHHHHHHHHHcCCceEEeccCCHHHhccCCeEEEEE--CCCCCCCCChhHHHHHHHHH
Confidence 46777778876 67777666543210 112344556677775 344 112222455555554
Q ss_pred h----cCCeEeecceeccCCCCchHHHHHHHHHHHHHHHhh
Q 007567 227 N----QGAKRLVPVGLGDDDQCIEDDFSAWRELVWPELDNL 263 (598)
Q Consensus 227 ~----lGA~ri~~~g~gD~~~~~e~~f~~W~~~l~~~L~~~ 263 (598)
+ +.+.+..=.|+||.. + +.|..|.+.+-+.|.++
T Consensus 75 ~~~~~l~g~~~aVfGlGds~--Y-~~fc~~~~~ld~~l~~l 112 (146)
T PRK09004 75 EQKPDLSQVRFAAIGIGSSE--Y-DTFCGAIDKLEQLLKAK 112 (146)
T ss_pred hcCCCCCCCEEEEEeecCCC--H-HHHhHHHHHHHHHHHHc
Confidence 3 566777778999754 3 67888888877777653
No 171
>PRK11727 23S rRNA mA1618 methyltransferase; Provisional
Probab=29.60 E-value=42 Score=35.84 Aligned_cols=24 Identities=33% Similarity=0.671 Sum_probs=18.1
Q ss_pred CCCCCCCcEEEEeCCCC-hHhHHHH
Q 007567 559 LPADAKVPIIMIGPGTG-LAPFRGS 582 (598)
Q Consensus 559 lp~~~~~PiImIg~GTG-iAPfr~f 582 (598)
+|.....-++.||+|+| |+|+.|-
T Consensus 110 ~p~~~~~~vLDIGtGag~I~~lLa~ 134 (321)
T PRK11727 110 IPRGANVRVLDIGVGANCIYPLIGV 134 (321)
T ss_pred CCCCCCceEEEecCCccHHHHHHHh
Confidence 44444567999999987 8888753
No 172
>cd06212 monooxygenase_like The oxygenase reductase FAD/NADH binding domain acts as part of the multi-component bacterial oxygenases which oxidize hydrocarbons. These flavoprotein monooxygenases use molecular oxygen as a substrate and require reduced FAD. One atom of oxygen is incorportated into the aromatic compond, while the other is used to form a molecule of water. In contrast dioxygenases add both atoms of oxygen to the substrate.
Probab=29.48 E-value=1e+02 Score=30.43 Aligned_cols=40 Identities=13% Similarity=0.218 Sum_probs=30.7
Q ss_pred eeEEeeeecccCCCCCCceeEEEEeecC-CCCccCCCCeeEEecCC
Q 007567 317 RSNVAVRKELHTPSSDRSCTHLEFDIAG-TGLTYETGDHVGVYCEN 361 (598)
Q Consensus 317 ~a~v~~~~eL~~~~s~rs~~hie~di~~-~~l~Y~~GD~l~V~P~N 361 (598)
.++|...+.++. +++++.|+++. ..+.|+||.|+.|..++
T Consensus 2 ~~~v~~~~~~~~-----~~~~~~l~~~~~~~~~~~pGQ~v~l~~~~ 42 (232)
T cd06212 2 VGTVVAVEALTH-----DIRRLRLRLEEPEPIKFFAGQYVDITVPG 42 (232)
T ss_pred ceEEEEEeecCC-----CeEEEEEEcCCCCcCCcCCCCeEEEEcCC
Confidence 467888887753 47888888754 35789999999998654
No 173
>TIGR01918 various_sel_PB selenoprotein B, glycine/betaine/sarcosine/D-proline reductase family. This model represents selenoprotein B of glycine reductase, sarcosine reductase, betaine reductase, D-proline reductase, and perhaps others. This model is built in fragment mode to assist in recognizing fragmentary translations. All members are expected to contain an internal TGA codon, encoding selenocysteine, which may be misinterpreted as a stop codon.
Probab=29.26 E-value=4.1e+02 Score=29.59 Aligned_cols=77 Identities=25% Similarity=0.227 Sum_probs=48.5
Q ss_pred EEEEEecCCCCCcchHHHHHHHHHHhhcCCCcccCCceEEEEeecCCcchhHhHHHHHHHHHHHhcCCeEeecc-----e
Q 007567 163 VFFFLATYGDGEPTDNAARFYKWFTEQKEGGEWLQKLKYGVFGLGNRQYEHFNKIAKVVDEILANQGAKRLVPV-----G 237 (598)
Q Consensus 163 vIf~~sTyG~Geppdna~~F~~~L~~~~~~~~~l~~~~yaVFGLGds~Y~~Fn~~~k~ld~~L~~lGA~ri~~~-----g 237 (598)
.++++||. |-.+..+.-..+.+++. |.....++. +-..-+..||.||+|- -
T Consensus 339 AVILTstC--gtC~r~~a~m~keiE~~--------GiPvv~~~~--------------~~pis~tvGanrivp~~~ip~P 394 (431)
T TIGR01918 339 AVILTSTU--GTCTRCGATMVKEIERA--------GIPVVHMCT--------------VIPIALTVGANRIVPTIAIPHP 394 (431)
T ss_pred EEEEcCCC--CcchhHHHHHHHHHHHc--------CCCEEEEee--------------cccHhhhcCccceecccCcCCC
Confidence 68888998 66788888888888752 455555541 1123345799999863 3
Q ss_pred eccCCCCchHHHHHHHHHHHHHHHhh
Q 007567 238 LGDDDQCIEDDFSAWRELVWPELDNL 263 (598)
Q Consensus 238 ~gD~~~~~e~~f~~W~~~l~~~L~~~ 263 (598)
+||-....++...--+..+-.+|+.+
T Consensus 395 lGnp~l~~~~e~~~Rr~~v~~AL~aL 420 (431)
T TIGR01918 395 LGDPALSKAEEKKLRRKRVEKALKAL 420 (431)
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHh
Confidence 56666666665544444555666654
No 174
>cd07371 2A5CPDO_AB The alpha and beta subunits of the Class III extradiol dioxygenase, 2-amino-5-chlorophenol 1,6-dioxygenase, which catalyzes the oxidization and subsequent ring-opening of 2-amino-5-chlorophenol. This subfamily contains both alpha and beta subunits of 2-amino-5-chlorophenol 1,6-dioxygenase (2A5CPDO), which catalyzes the oxidization and subsequent ring-opening of 2-amino-5-chlorophenol, an intermediate during p-chloronitrobenzene degradation. 2A5CPDO is a member of the class III extradiol dioxygenase family, a group of enzymes which use a non-heme Fe(II) to cleave aromatic rings between a hydroxylated carbon and an adjacent non-hydroxylated carbon. The active enzyme is probably a heterotetramer, composed of two alpha and two beta subunits. Alpha and beta subunits share significant sequence similarity and may have evolved by gene duplication.
Probab=28.70 E-value=3e+02 Score=28.31 Aligned_cols=104 Identities=8% Similarity=0.000 Sum_probs=54.8
Q ss_pred HHHHHHHHHHHHHhhcCCceeEEEcCCCCCCcchHH--HHhhc-cCCeEEEEEe-cCCCCCcchHHHHHHHHHHhhcCCC
Q 007567 118 AEGFAKALADEARARYDKAIFKVVDIDDYADEEDEY--EEKLK-KENIVFFFLA-TYGDGEPTDNAARFYKWFTEQKEGG 193 (598)
Q Consensus 118 ae~~A~~la~~l~~~~~~~~~~v~dl~~~~~~~~~~--~~~l~-~~~~vIf~~s-TyG~Geppdna~~F~~~L~~~~~~~ 193 (598)
..++|++|++.+.+.+. .+..++-.+...|---. ..-+. +.++-++.++ ..+ .-.+....+|=+.|.+.-
T Consensus 86 ~~eLA~~i~~~~~~~gi--~~~~~~~~~~~lDHG~~vPL~~l~p~~~ipvV~vs~~~~-~~~~~~~~~lG~al~~~l--- 159 (268)
T cd07371 86 DVELAEACVEEGRKAGL--VTRMMRYPRFPIDTGTITALTLMRPGTDIPPVVISANNL-YLSGEETEGEMDLAGKAT--- 159 (268)
T ss_pred CHHHHHHHHHHHHHCCC--cEEEecCCCCCCCchhHHHHHHhcCCCCCCeEEEEecCc-CCCHHHHHHHHHHHHHHH---
Confidence 45789999999987763 33332233332221000 11122 2343333333 332 233444444444554210
Q ss_pred cccCCceEEEEeecCCcch------------hHhHHHHHHHHHHHhc
Q 007567 194 EWLQKLKYGVFGLGNRQYE------------HFNKIAKVVDEILANQ 228 (598)
Q Consensus 194 ~~l~~~~yaVFGLGds~Y~------------~Fn~~~k~ld~~L~~l 228 (598)
.-.+.+++|+|.|+.+.. .|...++.+|+++.++
T Consensus 160 -~~~~~rv~iIgSG~lsH~l~~~~~~~~~~~~~~~~~~~fD~~~~~~ 205 (268)
T cd07371 160 -RDAGKRVAVLGSGGLSHSHFHEEIDPPKDHIESEEGDKWNRRMLEL 205 (268)
T ss_pred -HHcCCcEEEEEecCccccccCCCCCcccccccchhhHHHHHHHHHH
Confidence 012489999999998863 2446778888888765
No 175
>PF08021 FAD_binding_9: Siderophore-interacting FAD-binding domain; InterPro: IPR013113 Proteins in this entry are siderophore-interacting FAD-binding proteins. This entry includes the vibriobactin utilization protein ViuB, which is involved in the removal of iron from iron-vibriobactin complexes, as well as several hypothetical proteins.; PDB: 2GPJ_A.
Probab=28.58 E-value=45 Score=29.98 Aligned_cols=54 Identities=19% Similarity=0.350 Sum_probs=24.7
Q ss_pred CCCCcccccCCCCCCCCCeEEEEEEEEEeeCCCCCcccCcchHHhhccCCCCCCCCCceEEEEEeCCCc
Q 007567 489 RLQPRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLCSTWMKNSLPMEKSNDCSWAPIFVRQSNF 557 (598)
Q Consensus 489 ~l~pR~YSIsSsp~~~~~~i~itv~~v~~~~~~g~~~~G~~S~~L~~~~~~~~~~~~~~~~i~v~~s~F 557 (598)
+...|.|||.+--.. .+++.|-+.+ + | ..|.+|.|..+..+++ .+-|.-+.+.|
T Consensus 64 ~p~~R~YTvR~~d~~-~~~l~iDfv~-H-----g--~~Gpas~WA~~A~pGd------~v~v~gP~g~~ 117 (117)
T PF08021_consen 64 RPVMRTYTVRRFDPE-TGELDIDFVL-H-----G--DEGPASRWARSARPGD------RVGVTGPRGSF 117 (117)
T ss_dssp --EEEEEE--EEETT---EEEEEEE--------S--S--HHHHHHHH--TT-------EEEEEEEE---
T ss_pred CCCCCCcCEeeEcCC-CCEEEEEEEE-C-----C--CCCchHHHHhhCCCCC------EEEEeCCCCCC
Confidence 445799999876332 2355544432 2 1 2399999999998875 45555555544
No 176
>PRK10310 PTS system galactitol-specific transporter subunit IIB; Provisional
Probab=28.40 E-value=1.1e+02 Score=26.39 Aligned_cols=30 Identities=13% Similarity=0.170 Sum_probs=26.6
Q ss_pred ceEEEEEeCCCchHHHHHHHHHHHHHhhcC
Q 007567 105 QKVTIFFGTQTGTAEGFAKALADEARARYD 134 (598)
Q Consensus 105 ~~v~I~YgSqTGtae~~A~~la~~l~~~~~ 134 (598)
++|+++=||-.||+..+|.++.+.+++++-
T Consensus 3 ~kILvvCgsG~~TS~m~~~ki~~~l~~~gi 32 (94)
T PRK10310 3 RKIIVACGGAVATSTMAAEEIKELCQSHNI 32 (94)
T ss_pred CeEEEECCCchhHHHHHHHHHHHHHHHCCC
Confidence 379999999999999999999999988764
No 177
>cd02071 MM_CoA_mut_B12_BD methylmalonyl CoA mutase B12 binding domain. This domain binds to B12 (adenosylcobamide), which initiates the conversion of succinyl CoA and methylmalonyl CoA by forming an adenosyl radical, which then undergoes a rearrangement exchanging a hydrogen atom with a group attached to a neighboring carbon atom. This family is present in both mammals and bacteria. Bacterial members are heterodimers and involved in the fermentation of pyruvate to propionate. Mammalian members are homodimers and responsible for the conversion of odd-chain fatty acids and branched-chain amino acids via propionyl CoA to succinyl CoA for further degradation.
Probab=27.68 E-value=4.4e+02 Score=23.46 Aligned_cols=109 Identities=15% Similarity=0.045 Sum_probs=64.8
Q ss_pred EEEeCCCchHHHHHHHHHHHHHhhcCCceeEEEcCCCCCCcchHHHHhhccCCe-EEEEEecCCCCCcchHHHHHHHHHH
Q 007567 109 IFFGTQTGTAEGFAKALADEARARYDKAIFKVVDIDDYADEEDEYEEKLKKENI-VFFFLATYGDGEPTDNAARFYKWFT 187 (598)
Q Consensus 109 I~YgSqTGtae~~A~~la~~l~~~~~~~~~~v~dl~~~~~~~~~~~~~l~~~~~-vIf~~sTyG~Geppdna~~F~~~L~ 187 (598)
|+.++--|---.+...+...+-+..+ ++++++-...+.+ ++.+...+.+. +|.+|++. +.....+.++.+.|+
T Consensus 2 vv~~~~~gd~H~lG~~~~~~~l~~~G---~~vi~lG~~vp~e-~~~~~a~~~~~d~V~iS~~~--~~~~~~~~~~~~~L~ 75 (122)
T cd02071 2 ILVAKPGLDGHDRGAKVIARALRDAG---FEVIYTGLRQTPE-EIVEAAIQEDVDVIGLSSLS--GGHMTLFPEVIELLR 75 (122)
T ss_pred EEEEecCCChhHHHHHHHHHHHHHCC---CEEEECCCCCCHH-HHHHHHHHcCCCEEEEcccc--hhhHHHHHHHHHHHH
Confidence 45566667777777777766655432 5777776554322 33333444443 55555554 667777888888887
Q ss_pred hhcCCCcccCCceEEEEeecCCcchhHhHHHHHHHHHHHhcCCeEeeccee
Q 007567 188 EQKEGGEWLQKLKYGVFGLGNRQYEHFNKIAKVVDEILANQGAKRLVPVGL 238 (598)
Q Consensus 188 ~~~~~~~~l~~~~yaVFGLGds~Y~~Fn~~~k~ld~~L~~lGA~ri~~~g~ 238 (598)
+. .+.+.++.+=| .. .+...++|.++|...++..+.
T Consensus 76 ~~-----~~~~i~i~~GG--~~--------~~~~~~~~~~~G~d~~~~~~~ 111 (122)
T cd02071 76 EL-----GAGDILVVGGG--II--------PPEDYELLKEMGVAEIFGPGT 111 (122)
T ss_pred hc-----CCCCCEEEEEC--CC--------CHHHHHHHHHCCCCEEECCCC
Confidence 63 13344444333 21 244457888999998887764
No 178
>COG2185 Sbm Methylmalonyl-CoA mutase, C-terminal domain/subunit (cobalamin-binding) [Lipid metabolism]
Probab=27.64 E-value=5.3e+02 Score=24.34 Aligned_cols=111 Identities=16% Similarity=0.146 Sum_probs=64.9
Q ss_pred CceEEEEEeCCCchHHHHHHHHHHHHHhhcCCceeEEEcCCCCCCcchHHHHhh-ccCCeEEEEEecCCCCCcchHHHHH
Q 007567 104 KQKVTIFFGTQTGTAEGFAKALADEARARYDKAIFKVVDIDDYADEEDEYEEKL-KKENIVFFFLATYGDGEPTDNAARF 182 (598)
Q Consensus 104 ~~~v~I~YgSqTGtae~~A~~la~~l~~~~~~~~~~v~dl~~~~~~~~~~~~~l-~~~~~vIf~~sTyG~Geppdna~~F 182 (598)
+.+|+|.==-+-|.... |+.++..+.+.| ++|++.--+..- +|+.... .+.--+|.+|+++ |.--.-+...
T Consensus 12 rprvlvak~GlDgHd~g-akvia~~l~d~G----feVi~~g~~~tp-~e~v~aA~~~dv~vIgvSsl~--g~h~~l~~~l 83 (143)
T COG2185 12 RPRVLVAKLGLDGHDRG-AKVIARALADAG----FEVINLGLFQTP-EEAVRAAVEEDVDVIGVSSLD--GGHLTLVPGL 83 (143)
T ss_pred CceEEEeccCccccccc-hHHHHHHHHhCC----ceEEecCCcCCH-HHHHHHHHhcCCCEEEEEecc--chHHHHHHHH
Confidence 34444443236676655 677777777765 456665544432 3333333 4444566667766 4444566667
Q ss_pred HHHHHhhcCCCcccCCceEEEEeecCCcchhHhHHHHHHHHHHHhcCCeEeecce
Q 007567 183 YKWFTEQKEGGEWLQKLKYGVFGLGNRQYEHFNKIAKVVDEILANQGAKRLVPVG 237 (598)
Q Consensus 183 ~~~L~~~~~~~~~l~~~~yaVFGLGds~Y~~Fn~~~k~ld~~L~~lGA~ri~~~g 237 (598)
.+.|.+.- ..... |++=|+-.-+. ...|+++|..+++..+
T Consensus 84 ve~lre~G-----~~~i~--v~~GGvip~~d--------~~~l~~~G~~~if~pg 123 (143)
T COG2185 84 VEALREAG-----VEDIL--VVVGGVIPPGD--------YQELKEMGVDRIFGPG 123 (143)
T ss_pred HHHHHHhC-----CcceE--EeecCccCchh--------HHHHHHhCcceeeCCC
Confidence 77777642 22222 55556665544 4678899999998775
No 179
>cd05567 PTS_IIB_mannitol PTS_IIB_mannitol: subunit IIB of enzyme II (EII) of the mannitol-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In this system, EII is a mannitol-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. The IIA, IIB, and IIC domains are expressed from the mtlA gene as a single protein, also known as the mannitol PTS permease, the mtl transporter, or MtlA. MtlA is only functional as a dimer with the dimer contacts occuring between the IIC domains. MtlA takes up exogenous mannitol releasing the phosphate ester into the cytoplasm in preparation for oxidation to fructose-6-phosphate by the NAD-dependent mannitol-P dehydrogenase (MtlD). The IIB domain fold includes a central four-stranded parallel open twisted beta-sheet flanked by alpha-helices on both sides. The seven major PTS systems with this IIB fold include mannitol, chitobiose/lichenan, ascorbate, lactose, galactitol, fructose, and a s
Probab=27.51 E-value=1.2e+02 Score=25.38 Aligned_cols=41 Identities=15% Similarity=0.095 Sum_probs=30.4
Q ss_pred ceEEEEEeCCCchHHHHHHHHHHHHHhhcCCceeEEEcCCC
Q 007567 105 QKVTIFFGTQTGTAEGFAKALADEARARYDKAIFKVVDIDD 145 (598)
Q Consensus 105 ~~v~I~YgSqTGtae~~A~~la~~l~~~~~~~~~~v~dl~~ 145 (598)
++|.++.||--||+..++.+|.+.++..+....+.-.++++
T Consensus 1 ~kilvvCg~G~gtS~ml~~ki~~~~~~~~~~~~v~~~~~~~ 41 (87)
T cd05567 1 KKIVFACDAGMGSSAMGASVLRKKLKKAGLEIPVTNSAIDE 41 (87)
T ss_pred CEEEEECCCCccHHHHHHHHHHHHHHHCCCceEEEEcchhh
Confidence 46899999999999999999999998655333334344433
No 180
>cd05009 SIS_GlmS_GlmD_2 SIS (Sugar ISomerase) domain repeat 2 found in Glucosamine 6-phosphate synthase (GlmS) and Glucosamine-6-phosphate deaminase (GlmD). The SIS domain is found in many phosphosugar isomerases and phosphosugar binding proteins. GlmS contains a N-terminal glutaminase domain and two C-terminal SIS domains and catalyzes the first step in hexosamine metabolism, converting fructose 6-phosphate into glucosamine 6-phosphate using glutamine as nitrogen source. The glutaminase domain hydrolyzes glutamine to glutamate and ammonia. Ammonia is transferred through a channel to the isomerase domain for glucosamine 6-phosphate synthesis. The end product of the pathway is N-acetylglucosamine, which plays multiple roles in eukaryotic cells including being a building block of bacterial and fungal cell walls. In the absence of glutamine, GlmS catalyzes the isomerization of fructose 6-phosphate into glucose 6- phosphate (PGI-like activity). Glucosamine-6-phosphate deaminase (GlmD) cont
Probab=27.06 E-value=1.7e+02 Score=26.57 Aligned_cols=71 Identities=13% Similarity=0.069 Sum_probs=41.6
Q ss_pred EEEEEeCCCchHHHHHHHHHHHHHhhcCCceeEEEcCCCCCCcchHHHHhhccCCeEEEEEecCCCCCcchHHHHHHHHH
Q 007567 107 VTIFFGTQTGTAEGFAKALADEARARYDKAIFKVVDIDDYADEEDEYEEKLKKENIVFFFLATYGDGEPTDNAARFYKWF 186 (598)
Q Consensus 107 v~I~YgSqTGtae~~A~~la~~l~~~~~~~~~~v~dl~~~~~~~~~~~~~l~~~~~vIf~~sTyG~Geppdna~~F~~~L 186 (598)
+.+-+|+..|+|+.+|.++.+... ..+...+..++.... ...+.+.+++|+++ .- |+-.+...+..+++
T Consensus 17 ~~~G~G~s~~~a~e~~~kl~e~~~-----i~~~~~~~~e~~hg~---~~~~~~~~~vi~is-~~--g~t~~~~~~~~~~~ 85 (153)
T cd05009 17 YVLGRGPNYGTALEGALKLKETSY-----IHAEAYSAGEFKHGP---IALVDEGTPVIFLA-PE--DRLEEKLESLIKEV 85 (153)
T ss_pred EEEcCCCCHHHHHHHHHHHHHHHh-----hcceeccHHHhccCh---hhhccCCCcEEEEe-cC--ChhHHHHHHHHHHH
Confidence 445588899999999998887642 223444444443211 12344555555554 33 44445567777777
Q ss_pred Hh
Q 007567 187 TE 188 (598)
Q Consensus 187 ~~ 188 (598)
++
T Consensus 86 ~~ 87 (153)
T cd05009 86 KA 87 (153)
T ss_pred HH
Confidence 65
No 181
>cd07373 2A5CPDO_A The alpha subunit of the Class III extradiol dioxygenase, 2-amino-5-chlorophenol 1,6-dioxygenase, which catalyzes the oxidization and subsequent ring-opening of 2-amino-5-chlorophenol. 2-amino-5-chlorophenol 1,6-dioxygenase (2A5CPDO) catalyzes the oxidization and subsequent ring-opening of 2-amino-5-chlorophenol, which is an intermediate during p-chloronitrobenzene degradation. This enzyme is a member of the class III extradiol dioxygenase family, a group of enzymes which use a non-heme Fe(II) to cleave aromatic rings between a hydroxylated carbon and an adjacent non-hydroxylated carbon. The active enzyme is probably a heterotetramer, composed of two alpha and two beta subunits. The alpha and beta subunits share significant sequence similarity and may have evolved by gene duplication. This model describes the alpha subunit, which does not contain a potential metal binding site and may not possess catalytic activity.
Probab=26.96 E-value=3.5e+02 Score=27.95 Aligned_cols=86 Identities=12% Similarity=0.058 Sum_probs=43.9
Q ss_pred HHHHHHHHHHHHHhhcCCceeEEEcCCCCCCcch--HHHHhh-c-cCCe-EEEEEecCCCCCcchHHHHHHHHHHhhcCC
Q 007567 118 AEGFAKALADEARARYDKAIFKVVDIDDYADEED--EYEEKL-K-KENI-VFFFLATYGDGEPTDNAARFYKWFTEQKEG 192 (598)
Q Consensus 118 ae~~A~~la~~l~~~~~~~~~~v~dl~~~~~~~~--~~~~~l-~-~~~~-vIf~~sTyG~Geppdna~~F~~~L~~~~~~ 192 (598)
..++|++|++.+.+.+ ..+..+|-+....|-- -...-+ . ..++ +|- +|... .-++....+|=+.|.+.-
T Consensus 89 ~~eLA~~i~~~~~~~g--i~~~~~~~~~~~lDHG~~vPL~~l~~~~~~iPvV~-~s~~~-~~~~~~~~~lG~al~~~l-- 162 (271)
T cd07373 89 DTALAEACVTACPEHG--VHARGVDYDGFPIDTGTITACTLMGIGTEALPLVV-ASNNL-YHSGEITEKLGAIAADAA-- 162 (271)
T ss_pred CHHHHHHHHHHHHHCC--CcEEEecCCCCCCcchhHHHHHHHcccCCCCCEEE-EEeCC-CCCHHHHHHHHHHHHHHH--
Confidence 5678999999998765 3333344332211100 001122 1 1222 333 33321 235555555555565321
Q ss_pred CcccCCceEEEEeecCCcc
Q 007567 193 GEWLQKLKYGVFGLGNRQY 211 (598)
Q Consensus 193 ~~~l~~~~yaVFGLGds~Y 211 (598)
.-.+.+++|+|.|+-+.
T Consensus 163 --~~~~~rV~iIgSG~lSH 179 (271)
T cd07373 163 --KDQNKRVAVVGVGGLSG 179 (271)
T ss_pred --HHcCCeEEEEEeccccc
Confidence 11248999999999886
No 182
>smart00852 MoCF_biosynth Probable molybdopterin binding domain. This domain is found a variety of proteins involved in biosynthesis of molybdopterin cofactor. The domain is presumed to bind molybdopterin. The structure of this domain is known, and it forms an alpha/beta structure. In the known structure of Gephyrin this domain mediates trimerisation.
Probab=26.48 E-value=51 Score=30.02 Aligned_cols=51 Identities=16% Similarity=0.254 Sum_probs=33.8
Q ss_pred EEeecCCcch---hHhHHHHHHHHHHHhcCCeEeecceeccCCCCchHHHHHHH
Q 007567 203 VFGLGNRQYE---HFNKIAKVVDEILANQGAKRLVPVGLGDDDQCIEDDFSAWR 253 (598)
Q Consensus 203 VFGLGds~Y~---~Fn~~~k~ld~~L~~lGA~ri~~~g~gD~~~~~e~~f~~W~ 253 (598)
|+-.||.-.. -++..+..+.++|++.|++........||...+.+.+.+|.
T Consensus 2 vi~~GdEi~~~~~~~d~~~~~l~~~l~~~G~~~~~~~~v~Dd~~~I~~~l~~~~ 55 (135)
T smart00852 2 IISTGDELLSGGQIYDSNGPALAELLTELGIEVTRYVIVPDDKEAIKEALREAL 55 (135)
T ss_pred EEEEechhhcCCCcccCcHHHHHHHHHHCCCeEEEEEEeCCCHHHHHHHHHHHH
Confidence 4555665442 25777889999999999986655555565555666666664
No 183
>PRK05907 hypothetical protein; Provisional
Probab=26.38 E-value=7.9e+02 Score=25.98 Aligned_cols=126 Identities=12% Similarity=0.082 Sum_probs=66.5
Q ss_pred eEEEEEeCCCchHHHHHHHHHHHHHhhcCCceeEEEcCCCCCCcchHHHHhh------ccCCeEEEEEecCCCCCcc-hH
Q 007567 106 KVTIFFGTQTGTAEGFAKALADEARARYDKAIFKVVDIDDYADEEDEYEEKL------KKENIVFFFLATYGDGEPT-DN 178 (598)
Q Consensus 106 ~v~I~YgSqTGtae~~A~~la~~l~~~~~~~~~~v~dl~~~~~~~~~~~~~l------~~~~~vIf~~sTyG~Gepp-dn 178 (598)
.++++||++. |.+.++|.+.+-... ...+|.++.+.++ ..+.. .+..++++--+ +.+. .+
T Consensus 19 ~~y~~~g~~~---~~~~~~l~~~~~~~~----~~~fdg~~~~~~~--ii~~aetlPfFaerRlV~v~~~----~~~~~~~ 85 (311)
T PRK05907 19 PAVIVIGSSS---EEDKDIFIELLVSGR----KSEFDGQGLLQQE--LLSWTEHFGLFASQETIGIYQA----EKMSSST 85 (311)
T ss_pred ceEEEecCCc---HHHHHHHHHHhCCCc----cceecCCCCCHHH--HHHHHhcCCcccCeEEEEEecc----ccccccc
Confidence 8999999999 777777766553211 1346777766422 22221 23334433222 2333 35
Q ss_pred HHHHHHHHHhhcCCCcccCCceEEEEeecCCcchhHhHHHHHHHHHHHhcCCeEeecceeccCCCCchHHHHHHHHHHHH
Q 007567 179 AARFYKWFTEQKEGGEWLQKLKYGVFGLGNRQYEHFNKIAKVVDEILANQGAKRLVPVGLGDDDQCIEDDFSAWRELVWP 258 (598)
Q Consensus 179 a~~F~~~L~~~~~~~~~l~~~~yaVFGLGds~Y~~Fn~~~k~ld~~L~~lGA~ri~~~g~gD~~~~~e~~f~~W~~~l~~ 258 (598)
.+.+.+++.+. ......-||.. .+++|.+.-|.+.+ |+. + +. .++...-.+.++..|..+...
T Consensus 86 ~~~L~~Yl~np------~~~~~liv~~~---~~d~~kkl~K~i~k-----~~~-v-~~-~~e~~~l~e~~L~~Wi~~~~~ 148 (311)
T PRK05907 86 QEFLIRYARNP------NPHLTLFLFTT---KQECFSSLSKKLSS-----ALC-L-SL-FGEWFADRDKRIAQLLIQRAK 148 (311)
T ss_pred HHHHHHHHhCC------CCCeEEEEEEe---cccHHHHHHHHHhh-----cce-e-cc-ccccCCCCHHHHHHHHHHHHH
Confidence 67788888752 11233444654 27777765555543 221 1 00 001122236889999887665
Q ss_pred HHH
Q 007567 259 ELD 261 (598)
Q Consensus 259 ~L~ 261 (598)
...
T Consensus 149 ~~g 151 (311)
T PRK05907 149 ELG 151 (311)
T ss_pred HcC
Confidence 443
No 184
>PRK07168 bifunctional uroporphyrinogen-III methyltransferase/uroporphyrinogen-III synthase; Reviewed
Probab=25.78 E-value=2.1e+02 Score=32.33 Aligned_cols=88 Identities=13% Similarity=0.107 Sum_probs=51.2
Q ss_pred HHHHHHHHHHhhcCCceeE--EEcCCCCCCcchHHHHhhccCCeEEEEEecCCCCCcchHHHHHHHHHHhhcCCCcccCC
Q 007567 121 FAKALADEARARYDKAIFK--VVDIDDYADEEDEYEEKLKKENIVFFFLATYGDGEPTDNAARFYKWFTEQKEGGEWLQK 198 (598)
Q Consensus 121 ~A~~la~~l~~~~~~~~~~--v~dl~~~~~~~~~~~~~l~~~~~vIf~~sTyG~Geppdna~~F~~~L~~~~~~~~~l~~ 198 (598)
-|..+++.|++.|. ..+. .+.+...... +...+.+.+++- |+++|-. ..+.|+++|.+...+-..|.
T Consensus 262 q~~~l~~~L~~~GA-~v~~~P~i~~~~~~~~-~~~l~~l~~ydw-lvFTS~n-------gV~~Ff~~l~~~~~D~R~l~- 330 (474)
T PRK07168 262 KTSVMKQKLQEAGA-EIYQIPTFKKEEYTLT-LEQINEIFNVNR-LVFCSAE-------SVEILMQSCSKYKKDIRSLQ- 330 (474)
T ss_pred HHHHHHHHHHHcCC-EEEEeccEEeeCCCCc-HHHHHHhccCCE-EEEcCHH-------HHHHHHHHHHHcCCChHHhC-
Confidence 35667777776663 1111 1222222221 233466778875 4555544 47788999987543333455
Q ss_pred ceEEEEeecCCcchhHhHHHHHHHHHHHhcCCeE
Q 007567 199 LKYGVFGLGNRQYEHFNKIAKVVDEILANQGAKR 232 (598)
Q Consensus 199 ~~yaVFGLGds~Y~~Fn~~~k~ld~~L~~lGA~r 232 (598)
.++|+.| ....+.|++.|-..
T Consensus 331 ~kiaavG-------------~~Ta~aL~~~Gl~~ 351 (474)
T PRK07168 331 AELQHMN-------------VATQEKLMQYGLLS 351 (474)
T ss_pred CEEEEEC-------------HHHHHHHHhCCCcc
Confidence 6788777 67778888888654
No 185
>PF08693 SKG6: Transmembrane alpha-helix domain; InterPro: IPR014805 SKG6 and AXL2 are membrane proteins that show polarised intracellular localisation [, ]. This entry represents the highly conserved transmembrane alpha-helical domain found in these proteins [, ]. The full-length AXL2 protein has a negative regulatory function in cytokinesis [].
Probab=25.63 E-value=44 Score=24.53 Aligned_cols=14 Identities=29% Similarity=0.750 Sum_probs=6.6
Q ss_pred HHHHHHHHhhhhcc
Q 007567 64 VLIGCVVVFILRRS 77 (598)
Q Consensus 64 ~~~~~~~~~~~~~~ 77 (598)
+++++++|++|||+
T Consensus 26 ~vl~~~l~~~~rR~ 39 (40)
T PF08693_consen 26 IVLGAFLFFWYRRK 39 (40)
T ss_pred HHHHHHhheEEecc
Confidence 34444455545554
No 186
>PRK13609 diacylglycerol glucosyltransferase; Provisional
Probab=25.54 E-value=1.2e+02 Score=32.33 Aligned_cols=40 Identities=25% Similarity=0.153 Sum_probs=29.8
Q ss_pred CCceEEEEEeCCCchHHHHHHHHHHHHHhhcCCceeEEEcC
Q 007567 103 GKQKVTIFFGTQTGTAEGFAKALADEARARYDKAIFKVVDI 143 (598)
Q Consensus 103 ~~~~v~I~YgSqTGtae~~A~~la~~l~~~~~~~~~~v~dl 143 (598)
.+++|+|+++|-+|---..|+.|++++.+++.. .+.++|.
T Consensus 3 ~~~rili~t~~~G~GH~~~a~al~~~l~~~g~~-~~~~~d~ 42 (380)
T PRK13609 3 KNPKVLILTAHYGNGHVQVAKTLEQTFRQKGIK-DVIVCDL 42 (380)
T ss_pred CCCeEEEEEcCCCchHHHHHHHHHHHHHhcCCC-cEEEEEh
Confidence 457899999997657778899999999887642 2344444
No 187
>PRK15438 erythronate-4-phosphate dehydrogenase PdxB; Provisional
Probab=25.30 E-value=2.1e+02 Score=31.28 Aligned_cols=34 Identities=29% Similarity=0.509 Sum_probs=29.3
Q ss_pred CcccCCceEEEEeecCCcchhHhHHHHHHHHHHHhcCCeEee
Q 007567 193 GEWLQKLKYGVFGLGNRQYEHFNKIAKVVDEILANQGAKRLV 234 (598)
Q Consensus 193 ~~~l~~~~yaVFGLGds~Y~~Fn~~~k~ld~~L~~lGA~ri~ 234 (598)
+..|.+++++|+|+|+ +|+.+.++|+.+|.+-++
T Consensus 111 g~~L~gktvGIIG~G~--------IG~~vA~~l~a~G~~V~~ 144 (378)
T PRK15438 111 GFSLHDRTVGIVGVGN--------VGRRLQARLEALGIKTLL 144 (378)
T ss_pred CCCcCCCEEEEECcCH--------HHHHHHHHHHHCCCEEEE
Confidence 3468999999999884 899999999999998654
No 188
>PF04689 S1FA: DNA binding protein S1FA; InterPro: IPR006779 S1FA is an unusual small plant peptide of only 70 amino acids with a basic domain which contains a nuclear localization signal and a putative DNA binding helix. S1FA is highly conserved between dicotyledonous and monocotyledonous plants and may be a DNA-binding protein that specifically recognises the negative promoter element S1F [].; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=25.26 E-value=95 Score=25.12 Aligned_cols=25 Identities=12% Similarity=0.312 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHHH-HHHHhhhhccCC
Q 007567 55 VMILTTSIAVLIG-CVVVFILRRSSS 79 (598)
Q Consensus 55 ~~~~~~~~~~~~~-~~~~~~~~~~~~ 79 (598)
+++.+.++.+++| .++|.+|++.-.
T Consensus 18 lvV~g~ll~flvGnyvlY~Yaqk~lp 43 (69)
T PF04689_consen 18 LVVAGLLLVFLVGNYVLYVYAQKTLP 43 (69)
T ss_pred ehHHHHHHHHHHHHHHHHHHHhhcCC
Confidence 4455666667777 677777766554
No 189
>PRK13608 diacylglycerol glucosyltransferase; Provisional
Probab=24.79 E-value=1.3e+02 Score=32.50 Aligned_cols=43 Identities=9% Similarity=0.022 Sum_probs=31.5
Q ss_pred CCceEEEEEeCCCchHHHHHHHHHHHHHhhcC-CceeEEEcCCC
Q 007567 103 GKQKVTIFFGTQTGTAEGFAKALADEARARYD-KAIFKVVDIDD 145 (598)
Q Consensus 103 ~~~~v~I~YgSqTGtae~~A~~la~~l~~~~~-~~~~~v~dl~~ 145 (598)
.+++|+|+.+|-.|-=...|+.|++.+.+++. ...+.++|+=+
T Consensus 4 ~~~~vlil~~~~G~GH~~aA~al~~~~~~~~~~~~~~~~~D~~~ 47 (391)
T PRK13608 4 QNKKILIITGSFGNGHMQVTQSIVNQLNDMNLDHLSVIEHDLFM 47 (391)
T ss_pred CCceEEEEECCCCchHHHHHHHHHHHHHhhCCCCceEEEeehHH
Confidence 46789999999766667789999999987764 24456666543
No 190
>TIGR01478 STEVOR variant surface antigen, stevor family. This model represents the stevor branch of the rifin/stevor family (pfam02009) of predicted variant surface antigens as found in Plasmodium falciparum. This model is based on a set of stevor sequences kindly provided by Matt Berriman from the Sanger Center. This is a global model and assesses a penalty for incomplete sequence. Additional fragmentary sequences may be found with the fragment model and a cutoff of 8 bits.
Probab=24.02 E-value=1.3e+02 Score=31.59 Aligned_cols=15 Identities=27% Similarity=0.080 Sum_probs=7.8
Q ss_pred ccChHH---HHHHHHcCC
Q 007567 14 KVSPFD---LMSAIIRGG 28 (598)
Q Consensus 14 ~~~~~~---~~~~~~~~~ 28 (598)
.+++|+ |.+||-.|.
T Consensus 220 IfNMF~~sSm~sAiqag~ 237 (295)
T TIGR01478 220 GINFFFSSSIESAGKTGV 237 (295)
T ss_pred hhcccChHHHHHHHHhcc
Confidence 444554 556665544
No 191
>TIGR00853 pts-lac PTS system, lactose/cellobiose family IIB component. Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains.The Lac family includes several sequenced lactose (b-galactoside) permeases of Gram-positive bacteria as well as those in E. coli. While the Lac family usually consists of two polypeptide components IIA and IICB, the Chb permease of E. coli consists of three IIA, IIB and IIC. This family is specific for the IIB subunit of the Lac PTS family.
Probab=23.80 E-value=1.3e+02 Score=26.03 Aligned_cols=31 Identities=6% Similarity=0.066 Sum_probs=25.1
Q ss_pred CceEEEEEeCCCchHHHHHHHHHHHHHhhcCC
Q 007567 104 KQKVTIFFGTQTGTAEGFAKALADEARARYDK 135 (598)
Q Consensus 104 ~~~v~I~YgSqTGtae~~A~~la~~l~~~~~~ 135 (598)
+++|+++=|+-.+|+ -+++++.+.+++++-.
T Consensus 3 ~~~ILl~C~~G~sSS-~l~~k~~~~~~~~gi~ 33 (95)
T TIGR00853 3 ETNILLLCAAGMSTS-LLVNKMNKAAEEYGVP 33 (95)
T ss_pred ccEEEEECCCchhHH-HHHHHHHHHHHHCCCc
Confidence 468899988887776 6899999999887643
No 192
>cd07363 45_DOPA_Dioxygenase The Class III extradiol dioxygenase, 4,5-DOPA Dioxygenase, catalyzes the incorporation of both atoms of molecular oxygen into 4,5-dihydroxy-phenylalanine. This subfamily is composed of plant 4,5-DOPA Dioxygenase, the uncharacterized Escherichia coli protein Jw3007, and similar proteins. 4,5-DOPA Dioxygenase catalyzes the incorporation of both atoms of molecular oxygen into 4,5-dihydroxy-phenylalanine (4,5-DOPA). The reaction results in the opening of the cyclic ring between carbons 4 and 5 and producing an unstable seco-DOPA that rearranges to betalamic acid. 4,5-DOPA Dioxygenase is a key enzyme in the biosynthetic pathway of the plant pigment betalain. Homologs of DODA are present not only in betalain-producing plants but also in bacteria and archaea. This enzyme is a member of the class III extradiol dioxygenase family, a group of enzymes which use a non-heme Fe(II) to cleave aromatic rings between a hydroxylated carbon and an adjacent non-hydroxylated ca
Probab=23.70 E-value=3.7e+02 Score=27.40 Aligned_cols=84 Identities=11% Similarity=0.067 Sum_probs=43.1
Q ss_pred CchHHHHHHHHHHHHHhhcCCceeEEEcCCCCCCcchHH--HHhh-ccCCeEEEEEecCCCCCcchHHHHHHHHHHhhcC
Q 007567 115 TGTAEGFAKALADEARARYDKAIFKVVDIDDYADEEDEY--EEKL-KKENIVFFFLATYGDGEPTDNAARFYKWFTEQKE 191 (598)
Q Consensus 115 TGtae~~A~~la~~l~~~~~~~~~~v~dl~~~~~~~~~~--~~~l-~~~~~vIf~~sTyG~Geppdna~~F~~~L~~~~~ 191 (598)
.|+. ++|++|++.+.+.+. .+...+ +...|---. ..-+ ++.++=|+-+|.. .+.+|....+|=+.|.+
T Consensus 77 ~g~~-eLa~~i~~~l~~~gi--~~~~~~--~~~lDHG~~vPL~~~~p~~~iPvV~isi~-~~~~~~~~~~lG~aL~~--- 147 (253)
T cd07363 77 PGSP-ELAERVAELLKAAGI--PARLDP--ERGLDHGAWVPLKLMYPDADIPVVQLSLP-ASLDPAEHYALGRALAP--- 147 (253)
T ss_pred CCCH-HHHHHHHHHHHhcCC--CccccC--CcCCcccHHHHHHHHcCCCCCcEEEEEec-CCCCHHHHHHHHHHHHh---
Confidence 4444 589999999987653 222211 121111000 1112 2233333333332 22355555555556653
Q ss_pred CCcccCCceEEEEeecCCcc
Q 007567 192 GGEWLQKLKYGVFGLGNRQY 211 (598)
Q Consensus 192 ~~~~l~~~~yaVFGLGds~Y 211 (598)
+...+++|+|.|+.+.
T Consensus 148 ----l~~~~v~ii~SG~lsH 163 (253)
T cd07363 148 ----LRDEGVLIIGSGSSVH 163 (253)
T ss_pred ----hhhCCEEEEecCccee
Confidence 3345899999999875
No 193
>PF02875 Mur_ligase_C: Mur ligase family, glutamate ligase domain This Prosite entry is a subset of the Pfam family.; InterPro: IPR004101 The bacterial cell wall provides strength and rigidity to counteract internal osmotic pressure, and protection against the environment. The peptidoglycan layer gives the cell wall its strength, and helps maintain the overall shape of the cell. The basic peptidoglycan structure of both Gram-positive and Gram-negative bacteria is comprised of a sheet of glycan chains connected by short cross-linking polypeptides. Biosynthesis of peptidoglycan is a multi-step (11-12 steps) process comprising three main stages: (1) formation of UDP-N-acetylmuramic acid (UDPMurNAc) from N-acetylglucosamine (GlcNAc). (2) addition of a short polypeptide chain to the UDPMurNAc. (3) addition of a second GlcNAc to the disaccharide-pentapeptide building block and transport of this unit through the cytoplasmic membrane and incorporation into the growing peptidoglycan layer. Stage two involves four key Mur ligase enzymes: MurC (6.3.2.8 from EC) [], MurD (6.3.2.9 from EC) [], MurE (6.3.2.13 from EC) [] and MurF (6.3.2.10 from EC) []. These four Mur ligases are responsible for the successive additions of L-alanine, D-glutamate, meso-diaminopimelate or L-lysine, and D-alanyl-D-alanine to UDP-N-acetylmuramic acid. All four Mur ligases are topologically similar to one another, even though they display low sequence identity. They are each composed of three domains: an N-terminal Rossmann-fold domain responsible for binding the UDPMurNAc substrate; a central domain (similar to ATP-binding domains of several ATPases and GTPases); and a C-terminal domain (similar to dihydrofolate reductase fold) that appears to be associated with binding the incoming amino acid. The conserved sequence motifs found in the four Mur enzymes also map to other members of the Mur ligase family, including folylpolyglutamate synthetase, cyanophycin synthetase and the capB enzyme from Bacillales []. This entry represents the C-terminal domain from all four stage 2 Mur enzymes: UDP-N-acetylmuramate-L-alanine ligase (MurC), UDP-N-acetylmuramoylalanine-D-glutamate ligase (MurD), UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase (MurE), and UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase (MurF). This entry also includes the C-terminal domain of folylpolyglutamate synthase that transfers glutamate to folylpolyglutamate and cyanophycin synthetase that catalyses the biosynthesis of the cyanobacterial reserve material multi-L-arginyl-poly-L-aspartate (cyanophycin) []. The C-terminal domain is almost always associated with the cytoplasmic peptidoglycan synthetases, N-terminal domain (see IPR000713 from INTERPRO).; GO: 0005524 ATP binding, 0016874 ligase activity, 0009058 biosynthetic process; PDB: 2Y68_A 3UAG_A 4UAG_A 2UAG_A 1E0D_A 2XPC_A 2WJP_A 2VTE_A 2Y67_A 1EEH_A ....
Probab=23.59 E-value=1.5e+02 Score=24.76 Aligned_cols=50 Identities=18% Similarity=0.290 Sum_probs=30.8
Q ss_pred CCcchHHHHHHHHHHhhcCCCcccCCceEEEEe-ecC---CcchhHhHHHHHHHHHHHhcCCe
Q 007567 173 GEPTDNAARFYKWFTEQKEGGEWLQKLKYGVFG-LGN---RQYEHFNKIAKVVDEILANQGAK 231 (598)
Q Consensus 173 Geppdna~~F~~~L~~~~~~~~~l~~~~yaVFG-LGd---s~Y~~Fn~~~k~ld~~L~~lGA~ 231 (598)
+--|+.++..++.|++.. -.+..++||| ++| +.++....++ +.+.++.-.
T Consensus 21 ahNp~s~~a~l~~l~~~~-----~~~~~i~V~G~~~d~g~~~~~~~~~~~----~~~~~~~d~ 74 (91)
T PF02875_consen 21 AHNPDSIRALLEALKELY-----PKGRIIAVFGAMGDLGSKDKDFHEEIG----ELAAQLADV 74 (91)
T ss_dssp --SHHHHHHHHHHHHHHC-----TTSEEEEEEEEBTT-HTSHHHCHHHHH----HHHTTCSSE
T ss_pred CCCHHHHHHHHHHHHHhc-----cCCcEEEEEccccccccccHHHHHHHH----HHHHhcCCE
Confidence 345788888899988642 3678999999 455 5554443333 444444444
No 194
>PHA03164 hypothetical protein; Provisional
Probab=23.58 E-value=2.2e+02 Score=23.85 Aligned_cols=26 Identities=19% Similarity=0.313 Sum_probs=18.4
Q ss_pred hhhhhhccCc----hHHHHHHHHHHHHHHH
Q 007567 43 EVASIVLDNK----EFVMILTTSIAVLIGC 68 (598)
Q Consensus 43 ~~~~~~~~~~----~~~~~~~~~~~~~~~~ 68 (598)
.-||.+|.|+ .++++.+.++++++..
T Consensus 45 rtawnlwnnrRktftFlvLtgLaIamILfi 74 (88)
T PHA03164 45 RTAWNLWNNRRKTFTFLVLTGLAIAMILFI 74 (88)
T ss_pred chhHHHHHhhhheeehHHHHHHHHHHHHHH
Confidence 3589999984 3667777777776653
No 195
>COG1587 HemD Uroporphyrinogen-III synthase [Coenzyme metabolism]
Probab=23.58 E-value=2.3e+02 Score=28.60 Aligned_cols=54 Identities=17% Similarity=0.211 Sum_probs=37.0
Q ss_pred ccCCeEEEEEecCCCCCcchHHHHHHHHHHhhcCCCcccCCceEEEEeecCCcchhHhHHHHHHHHHHHhcCCeEee
Q 007567 158 KKENIVFFFLATYGDGEPTDNAARFYKWFTEQKEGGEWLQKLKYGVFGLGNRQYEHFNKIAKVVDEILANQGAKRLV 234 (598)
Q Consensus 158 ~~~~~vIf~~sTyG~Geppdna~~F~~~L~~~~~~~~~l~~~~yaVFGLGds~Y~~Fn~~~k~ld~~L~~lGA~ri~ 234 (598)
...+.++|-+|. .++.|++.+..... ..+.+.+++.+| ....+.++++|.+...
T Consensus 174 ~~~d~v~ftS~~--------~v~~~~~~~~~~~~--~~~~~~~v~~IG-------------~~Ta~~l~~~G~~~~~ 227 (248)
T COG1587 174 GEVDAVVFTSSS--------AVRALLALAPESGI--EFLERKRVASIG-------------PRTAETLKELGITVDI 227 (248)
T ss_pred CCCCEEEEeCHH--------HHHHHHHHccccch--hHhhCceEEEec-------------HHHHHHHHHcCCccee
Confidence 344555554443 58889888875421 146678888887 7888899999988744
No 196
>PF09651 Cas_APE2256: CRISPR-associated protein (Cas_APE2256); InterPro: IPR013442 Clustered Regularly Interspaced Short Palindromic Repeats (CRISPR) are a family of DNA direct repeats separated by regularly sized non-repetitive spacer sequences that are found in most bacterial and archaeal genomes []. CRISPRs appear to provide acquired resistance against bacteriophages, possibly acting with an RNA interference-like mechanism to inhibit gene functions of invasive DNA elements [, ]. Differences in the number and type of spacers between CRISPR repeats correlate with phage sensitivity. It is thought that following phage infection, bacteria integrate new spacers derived from phage genomic sequences, and that the removal or addition of particular spacers modifies the phage-resistance phenotype of the cell. Therefore, the specificity of CRISPRs may be determined by spacer-phage sequence similarity. In addition, there are many protein families known as CRISPR-associated sequences (Cas), which are encoded in the vicinity of CRISPR loci []. CRISPR/cas gene regions can be quite large, with up to 20 different, tandem-arranged cas genes next to a CRISPR cluster or filling the region between two repeat clusters. Cas genes and CRISPRs are found on mobile genetic elements such as plasmids, and have undergone extensive horizontal transfer. Cas proteins are thought to be involved in the propagation and functioning of CRISPRs. Some Cas proteins show similarity to helicases and repair proteins, although the functions of most are unknown. Cas families can be divided into subtypes according to operon organisation and phylogeny. This entry represents a conserved region of about 150 amino acids found in a family of Cas proteins in at least five archaeal and three bacterial species. In six of eight species, the protein is encoded the vicinity of a CRISPR/Cas locus.; PDB: 3QYF_A.
Probab=23.52 E-value=1.3e+02 Score=27.85 Aligned_cols=37 Identities=16% Similarity=0.192 Sum_probs=28.0
Q ss_pred EEEEEeCCCchHHHHHHHHHHHHHhhcCCceeEEEcCCC
Q 007567 107 VTIFFGTQTGTAEGFAKALADEARARYDKAIFKVVDIDD 145 (598)
Q Consensus 107 v~I~YgSqTGtae~~A~~la~~l~~~~~~~~~~v~dl~~ 145 (598)
-++||.|.|...+..|+.|.+-+.+++ ..+.+.-+.+
T Consensus 24 ~~~Ll~SDT~~G~~~a~il~~~l~~~g--~~v~~~~i~~ 60 (136)
T PF09651_consen 24 EVVLLHSDTPDGRLCAEILKEYLEEKG--INVEVVEIEG 60 (136)
T ss_dssp EEEEEEESSHHHHHHHHHHHHHHHHTT---EEEEEE---
T ss_pred EEEEEeCCCHHHHHHHHHHHHHHHHcC--CeEEEEEeee
Confidence 789999999999999999999999866 3355544333
No 197
>PF11074 DUF2779: Domain of unknown function(DUF2779); InterPro: IPR021301 This domain is conserved in bacteria. The function is not known.
Probab=22.43 E-value=89 Score=28.84 Aligned_cols=53 Identities=21% Similarity=0.323 Sum_probs=37.9
Q ss_pred CCccHHHHHHHHHhCCCh----------hHHHHHHHhcCccCHHHHHHHHHHcCCCHHHHHhhCC
Q 007567 419 SSPKKSALLALAAHASDP----------TEADRLRHLASPAGKDEYAQWIVASQRSLLEVMSEFP 473 (598)
Q Consensus 419 ~~p~k~~l~~La~~a~d~----------~ek~~L~~Las~~gk~~y~~~i~~~~~sl~dvL~~fp 473 (598)
.-|++.++..|.+...+. -|+.+|++|+.. -.+|.+.+..-...++|++.-|.
T Consensus 54 ~DPr~~~~~~L~~~i~~~~g~ivvyN~sfE~~rL~ela~~--~p~~~~~l~~I~~r~vDL~~~f~ 116 (130)
T PF11074_consen 54 EDPRRELIEALIKAIGSIYGSIVVYNKSFEKTRLKELAEL--FPDYAEKLNSIIERTVDLLDPFK 116 (130)
T ss_pred CCchHHHHHHHHHHhhhhcCeEEEechHHHHHHHHHHHHH--hHHHHHHHHHHHHHHHHHHHHHh
Confidence 457777888777777766 789999999853 45677777666666777776553
No 198
>cd06268 PBP1_ABC_transporter_LIVBP_like Periplasmic binding domain of ATP-binding cassette transporter-like systems that belong to the type I periplasmic binding fold protein superfamily. Periplasmic binding domain of ATP-binding cassette transporter-like systems that belong to the type I periplasmic binding fold protein superfamily. They are mostly present in archaea and eubacteria, and are primarily involved in scavenging solutes from the environment. ABC-type transporters couple ATP hydrolysis with the uptake and efflux of a wide range of substrates across bacterial membranes, including amino acids, peptides, lipids and sterols, and various drugs. These systems are comprised of transmembrane domains, nucleotide binding domains, and in most bacterial uptake systems, periplasmic binding proteins (PBPs) which transfer the ligand to the extracellular gate of the transmembrane domains. These PBPs bind their substrates selectively and with high affinity. Members of this group include ABC
Probab=22.39 E-value=7.3e+02 Score=24.18 Aligned_cols=96 Identities=24% Similarity=0.233 Sum_probs=51.1
Q ss_pred CceEEEEEeCCCchHHHHHHHHHHHHHhhcCCceeEEEcCCCCCCcchHHHHhhccCCeEEEEEecCCCCCcchHHHHHH
Q 007567 104 KQKVTIFFGTQTGTAEGFAKALADEARARYDKAIFKVVDIDDYADEEDEYEEKLKKENIVFFFLATYGDGEPTDNAARFY 183 (598)
Q Consensus 104 ~~~v~I~YgSqTGtae~~A~~la~~l~~~~~~~~~~v~dl~~~~~~~~~~~~~l~~~~~vIf~~sTyG~Geppdna~~F~ 183 (598)
.++|.|+|+... ..+..++.+.+.+++.+... +....+..-..+.......+.....-++++.+.+ +.+..|+
T Consensus 135 ~~~i~~v~~~~~-~~~~~~~~~~~~~~~~g~~i-~~~~~~~~~~~~~~~~~~~l~~~~~~~vi~~~~~-----~~~~~~~ 207 (298)
T cd06268 135 VKKVAIIYDDYA-YGRGLAAAFREALKKLGGEV-VAEETYPPGATDFSPLIAKLKAAGPDAVFLAGYG-----GDAALFL 207 (298)
T ss_pred CCEEEEEEcCCc-hhHHHHHHHHHHHHHcCCEE-EEEeccCCCCccHHHHHHHHHhcCCCEEEEcccc-----chHHHHH
Confidence 578999987654 66778888888777665221 1111111111111112233443332233333332 4677888
Q ss_pred HHHHhhcCCCcccCCceEEEEeecCCcchhH
Q 007567 184 KWFTEQKEGGEWLQKLKYGVFGLGNRQYEHF 214 (598)
Q Consensus 184 ~~L~~~~~~~~~l~~~~yaVFGLGds~Y~~F 214 (598)
+.+.+. +....++|+.....+.+
T Consensus 208 ~~~~~~--------g~~~~~~~~~~~~~~~~ 230 (298)
T cd06268 208 KQAREA--------GLKVPIVGGDGAAAPAL 230 (298)
T ss_pred HHHHHc--------CCCCcEEecCccCCHHH
Confidence 888753 23677788766555444
No 199
>PRK05752 uroporphyrinogen-III synthase; Validated
Probab=22.36 E-value=4e+02 Score=26.89 Aligned_cols=57 Identities=14% Similarity=0.033 Sum_probs=33.8
Q ss_pred HhhccCCeEEEEEecCCCCCcchHHHHHHHHHHhhcCCCcccCCceEEEEeecCCcchhHhHHHHHHHHHHHhcCCeEee
Q 007567 155 EKLKKENIVFFFLATYGDGEPTDNAARFYKWFTEQKEGGEWLQKLKYGVFGLGNRQYEHFNKIAKVVDEILANQGAKRLV 234 (598)
Q Consensus 155 ~~l~~~~~vIf~~sTyG~Geppdna~~F~~~L~~~~~~~~~l~~~~yaVFGLGds~Y~~Fn~~~k~ld~~L~~lGA~ri~ 234 (598)
..+..++.+||.++ . -.+.|+++|.+.. ....+.+++..| ++..+.|+++|-+..+
T Consensus 51 ~~l~~~d~iifTS~-n-------aV~~~~~~l~~~~---~~~~~~~~~aVG-------------~~Ta~al~~~G~~~~~ 106 (255)
T PRK05752 51 LELDRYCAVIVVSK-P-------AARLGLELLDRYW---PQPPQQPWFSVG-------------AATAAILQDYGLDVSY 106 (255)
T ss_pred hcCCCCCEEEEECH-H-------HHHHHHHHHHhhC---CCCcCCEEEEEC-------------HHHHHHHHHcCCCccc
Confidence 34567776555543 2 3566778876432 123345666665 6777788888876544
Q ss_pred c
Q 007567 235 P 235 (598)
Q Consensus 235 ~ 235 (598)
+
T Consensus 107 ~ 107 (255)
T PRK05752 107 P 107 (255)
T ss_pred C
Confidence 3
No 200
>cd06578 HemD Uroporphyrinogen-III synthase (HemD) catalyzes the asymmetrical cyclization of tetrapyrrole (linear) to uroporphyrinogen-III, the fourth step in the biosynthesis of heme. This ubiquitous enzyme is present in eukaryotes, bacteria and archaea. Mutations in the human uroporphyrinogen-III synthase gene cause congenital erythropoietic porphyria, a recessive inborn error of metabolism also known as Gunther disease.
Probab=22.27 E-value=7.1e+02 Score=23.96 Aligned_cols=57 Identities=19% Similarity=0.190 Sum_probs=37.5
Q ss_pred hhccCCeEEEEEecCCCCCcchHHHHHHHHHHhhcCCCcccCCceEEEEeecCCcchhHhHHHHHHHHHHHhcCCeEeec
Q 007567 156 KLKKENIVFFFLATYGDGEPTDNAARFYKWFTEQKEGGEWLQKLKYGVFGLGNRQYEHFNKIAKVVDEILANQGAKRLVP 235 (598)
Q Consensus 156 ~l~~~~~vIf~~sTyG~Geppdna~~F~~~L~~~~~~~~~l~~~~yaVFGLGds~Y~~Fn~~~k~ld~~L~~lGA~ri~~ 235 (598)
.+...+.+||.+ .. .++.|++.+.+.. ...+.+.++.+.| +...+.|++.|.+..+.
T Consensus 46 ~~~~~~~iiftS-~~-------av~~~~~~~~~~~--~~~~~~~~~~avG-------------~~Ta~~l~~~g~~~~~~ 102 (239)
T cd06578 46 DLDEYDWLIFTS-PN-------AVEAFFEALEELG--LRALAGLKIAAVG-------------PKTAEALREAGLTADFV 102 (239)
T ss_pred hcCCCCEEEEEC-HH-------HHHHHHHHHHhhC--CccccCCEEEEEC-------------HHHHHHHHHcCCCceeC
Confidence 344456555544 43 4677887776432 2356777777776 77888899999887664
No 201
>COG3414 SgaB Phosphotransferase system, galactitol-specific IIB component [Carbohydrate transport and metabolism]
Probab=22.14 E-value=3.2e+02 Score=23.70 Aligned_cols=58 Identities=9% Similarity=0.016 Sum_probs=42.5
Q ss_pred CceEEEEEeCCCchHHHHHHHHHHHHHhhcCCceeEEEcCCCCCCcchHHHHhhccCCeEEEEEecC
Q 007567 104 KQKVTIFFGTQTGTAEGFAKALADEARARYDKAIFKVVDIDDYADEEDEYEEKLKKENIVFFFLATY 170 (598)
Q Consensus 104 ~~~v~I~YgSqTGtae~~A~~la~~l~~~~~~~~~~v~dl~~~~~~~~~~~~~l~~~~~vIf~~sTy 170 (598)
+++|++.=|+--||+-.++.++-+.|++++-...+..+.++++.. .... .=||++++.
T Consensus 1 ~~KIL~aCG~GvgSS~~ik~kve~~l~~~gi~~~~~~~~v~~~~~-------~~~~--aDiiv~s~~ 58 (93)
T COG3414 1 MIKILAACGNGVGSSTMIKMKVEEVLKELGIDVDVEQCAVDEIKA-------LTDG--ADIIVTSTK 58 (93)
T ss_pred CcEEEEECCCCccHHHHHHHHHHHHHHHcCCCceeeeEEeccccc-------CCCc--ccEEEEehH
Confidence 467889999999999999999999999887545566666666653 1222 346676665
No 202
>cd06196 FNR_like_1 Ferredoxin reductase-like proteins catalyze electron transfer between an NAD(P)-binding domain of the alpha/beta class and a discrete (usually N-terminal) domain which varies in orientation with respect to the NAD(P) binding domain. The N-terminal region may contain a flavin prosthetic group (as in flavoenzymes) or use flavin as a substrate. Ferredoxin is reduced in the final stage of photosystem I. The flavoprotein Ferredoxin-NADP+ reductase transfers electrons from reduced ferredoxin to FAD (forming FADH2 via a semiquinone intermediate) which then transfers a hydride ion to convert NADP+ to NADPH.
Probab=21.80 E-value=1.5e+02 Score=28.96 Aligned_cols=40 Identities=15% Similarity=0.276 Sum_probs=30.4
Q ss_pred eeEEeeeecccCCCCCCceeEEEEeecCCCCccCCCCeeEEecCCC
Q 007567 317 RSNVAVRKELHTPSSDRSCTHLEFDIAGTGLTYETGDHVGVYCENL 362 (598)
Q Consensus 317 ~a~v~~~~eL~~~~s~rs~~hie~di~~~~l~Y~~GD~l~V~P~N~ 362 (598)
+++|+..++++ .+++++.|+.++ .+.|+||.++.|...++
T Consensus 2 ~~~v~~~~~~~-----~~~~~~~l~~~~-~~~~~pGQ~v~l~~~~~ 41 (218)
T cd06196 2 TVTLLSIEPVT-----HDVKRLRFDKPE-GYDFTPGQATEVAIDKP 41 (218)
T ss_pred ceEEEEEEEcC-----CCeEEEEEcCCC-cCCCCCCCEEEEEeeCC
Confidence 45677777775 357889998754 68999999999986543
No 203
>cd00885 cinA Competence-damaged protein. CinA is the first gene in the competence- inducible (cin) operon and is thought to be specifically required at some stage in the process of transformation. This domain is closely related to a domain, found in a variety of proteins involved in biosynthesis of molybdopterin cofactor, where the domain is presumed to bind molybdopterin.
Probab=21.43 E-value=1e+02 Score=29.60 Aligned_cols=54 Identities=17% Similarity=0.248 Sum_probs=37.4
Q ss_pred eEEEEeecCCcc--hhHhHHHHHHHHHHHhcCCeEeecceeccCCCCchHHHHHHH
Q 007567 200 KYGVFGLGNRQY--EHFNKIAKVVDEILANQGAKRLVPVGLGDDDQCIEDDFSAWR 253 (598)
Q Consensus 200 ~yaVFGLGds~Y--~~Fn~~~k~ld~~L~~lGA~ri~~~g~gD~~~~~e~~f~~W~ 253 (598)
+.+|+-.||.-. .-.+..+..+.++|.++|.+-..-...+|+...+.+.+..|.
T Consensus 1 ~v~Ii~~GdEl~~G~i~d~n~~~l~~~L~~~G~~v~~~~~v~Dd~~~I~~~l~~~~ 56 (170)
T cd00885 1 TAEIIAIGDELLSGQIVDTNAAFLAKELAELGIEVYRVTVVGDDEDRIAEALRRAS 56 (170)
T ss_pred CEEEEEECccccCCeEEEhHHHHHHHHHHHCCCEEEEEEEeCCCHHHHHHHHHHHH
Confidence 357888888654 456788889999999999986654455565444555555553
No 204
>PF00994 MoCF_biosynth: Probable molybdopterin binding domain; InterPro: IPR001453 Eukaryotic and prokaryotic molybdoenzymes require a molybdopterin cofactor (MoCF) for their activity. The biosynthesis of this cofactor involves a complex multistep enzymatic pathway. One of the eukaryotic proteins involved in this pathway is the Drosophila protein cinnamon [] which is highly similar to gephyrin, a rat microtubule-associated protein which was thought to anchor the glycine receptor to subsynaptic microtubules. Cinnamon and gephyrin are evolutionary related, in their N-terminal half, to the Escherichia coli MoCF biosynthesis proteins mog/chlG and moaB/chlA2 and, in their C-terminal half, to E. coli moeA/chlE.; GO: 0006777 Mo-molybdopterin cofactor biosynthetic process; PDB: 3TCR_B 1O8O_B 1O8Q_G 1EAV_D 1O8N_C 1UUX_A 1UUY_A 2G2C_A 2G4R_C 3K6A_F ....
Probab=21.18 E-value=45 Score=30.72 Aligned_cols=53 Identities=11% Similarity=0.163 Sum_probs=37.5
Q ss_pred EEEeecCCcc--hhHhHHHHHHHHHHHhcCCeEeecceeccCCCCchHHHHHHHH
Q 007567 202 GVFGLGNRQY--EHFNKIAKVVDEILANQGAKRLVPVGLGDDDQCIEDDFSAWRE 254 (598)
Q Consensus 202 aVFGLGds~Y--~~Fn~~~k~ld~~L~~lGA~ri~~~g~gD~~~~~e~~f~~W~~ 254 (598)
||+-.||.-+ .-++..+..+.++|+++|++-..-....|+...+.+.+..|.+
T Consensus 1 aIi~~GdEl~~g~~~d~n~~~l~~~l~~~G~~v~~~~~v~Dd~~~i~~~l~~~~~ 55 (144)
T PF00994_consen 1 AIISTGDELLSGQIRDSNGPFLAALLEELGIEVIRYGIVPDDPDAIKEALRRALD 55 (144)
T ss_dssp EEEEECHHHHTTSSEBHHHHHHHHHHHHTTEEEEEEEEEESSHHHHHHHHHHHHH
T ss_pred CEEEECccCcCCceEEhHHHHHHHHHHHcCCeeeEEEEECCCHHHHHHHHHhhhc
Confidence 5677777776 3478888999999999999766555556655556666655543
No 205
>PRK09212 pyruvate dehydrogenase subunit beta; Validated
Probab=20.87 E-value=2.9e+02 Score=29.42 Aligned_cols=78 Identities=17% Similarity=0.144 Sum_probs=51.7
Q ss_pred cCCceEEEEEeCCCchHHHHHHHHHHHHHhhcCCceeEEEcCCCCCCcchH-HHHhhccCCeEEEEEecCCCCCcchHHH
Q 007567 102 DGKQKVTIFFGTQTGTAEGFAKALADEARARYDKAIFKVVDIDDYADEEDE-YEEKLKKENIVFFFLATYGDGEPTDNAA 180 (598)
Q Consensus 102 ~~~~~v~I~YgSqTGtae~~A~~la~~l~~~~~~~~~~v~dl~~~~~~~~~-~~~~l~~~~~vIf~~sTyG~Geppdna~ 180 (598)
++..-+.|-|||..+.+.+.|+.|.+ .+ ..+.++|+....+=|.+ +.+.+.+.+.+|.+=-.+-.|..-..
T Consensus 200 ~G~di~iva~G~~~~~a~eAa~~L~~----~G--i~v~vi~~~~l~Pld~~~i~~~~~~~~~vv~vEe~~~~gGlg~~-- 271 (327)
T PRK09212 200 EGSDVTIVTFSIQVKLALEAAELLEK----EG--ISVEVIDLRTLRPLDTETIIESVKKTNRLVVVEEGWPFAGVGAE-- 271 (327)
T ss_pred eCCCEEEEEccHHHHHHHHHHHHHHh----cC--CcEEEEEEecCCCCCHHHHHHHHHhCCeEEEEcCCCCCCCHHHH--
Confidence 34555677799999999998887754 33 55778888777654433 44566777777777666655655555
Q ss_pred HHHHHHHh
Q 007567 181 RFYKWFTE 188 (598)
Q Consensus 181 ~F~~~L~~ 188 (598)
+.++|.+
T Consensus 272 -la~~l~~ 278 (327)
T PRK09212 272 -IAALIMK 278 (327)
T ss_pred -HHHHHHH
Confidence 4445544
No 206
>KOG1541 consensus Predicted protein carboxyl methylase [General function prediction only]
Probab=20.74 E-value=59 Score=33.03 Aligned_cols=21 Identities=38% Similarity=0.607 Sum_probs=16.2
Q ss_pred ccCCCCCCCcEEEEeCCCChH
Q 007567 557 FKLPADAKVPIIMIGPGTGLA 577 (598)
Q Consensus 557 F~lp~~~~~PiImIg~GTGiA 577 (598)
..||.+...=|+.||||||+.
T Consensus 44 Lalp~~~~~~iLDIGCGsGLS 64 (270)
T KOG1541|consen 44 LALPGPKSGLILDIGCGSGLS 64 (270)
T ss_pred hhCCCCCCcEEEEeccCCCcc
Confidence 456666566688999999985
No 207
>COG1587 HemD Uroporphyrinogen-III synthase [Coenzyme metabolism]
Probab=20.72 E-value=4.8e+02 Score=26.29 Aligned_cols=59 Identities=22% Similarity=0.231 Sum_probs=39.5
Q ss_pred HhhccCCeEEEEEecCCCCCcchHHHHHHHHHHhhcCCCcccCCceEEEEeecCCcchhHhHHHHHHHHHHHhcCCeEee
Q 007567 155 EKLKKENIVFFFLATYGDGEPTDNAARFYKWFTEQKEGGEWLQKLKYGVFGLGNRQYEHFNKIAKVVDEILANQGAKRLV 234 (598)
Q Consensus 155 ~~l~~~~~vIf~~sTyG~Geppdna~~F~~~L~~~~~~~~~l~~~~yaVFGLGds~Y~~Fn~~~k~ld~~L~~lGA~ri~ 234 (598)
..+..++ .|+++|.. ..+.|++.+..... .++++.++++.| .+..+.|+++|.+..+
T Consensus 46 ~~l~~~d-~vvfTS~~-------av~~~~~~l~~~~~--~~~~~~~i~aVG-------------~~Ta~~l~~~G~~~~~ 102 (248)
T COG1587 46 EDLDSAD-WVVFTSPN-------AVRFFFEALKEQGL--DALKNKKIAAVG-------------EKTAEALRKLGIKVDF 102 (248)
T ss_pred hccccCC-EEEEECHH-------HHHHHHHHHHhhcc--cccccCeEEEEc-------------HHHHHHHHHhCCCCCc
Confidence 3444445 55666654 46667777775432 267788998887 7778899999988765
Q ss_pred cc
Q 007567 235 PV 236 (598)
Q Consensus 235 ~~ 236 (598)
..
T Consensus 103 ~p 104 (248)
T COG1587 103 IP 104 (248)
T ss_pred CC
Confidence 43
No 208
>COG1490 Dtd D-Tyr-tRNAtyr deacylase [Translation, ribosomal structure and biogenesis]
Probab=20.58 E-value=6.7e+02 Score=23.58 Aligned_cols=90 Identities=18% Similarity=0.268 Sum_probs=55.4
Q ss_pred CCceEEEEEeCCCchHHHHHHHHHHHHHhhcCCceeEEEcCCCCCCcchHHHHhhccCCeEEEEE--------------e
Q 007567 103 GKQKVTIFFGTQTGTAEGFAKALADEARARYDKAIFKVVDIDDYADEEDEYEEKLKKENIVFFFL--------------A 168 (598)
Q Consensus 103 ~~~~v~I~YgSqTGtae~~A~~la~~l~~~~~~~~~~v~dl~~~~~~~~~~~~~l~~~~~vIf~~--------------s 168 (598)
-++.++++-|=..+.+++=|+++++++... ++++=++-.+. -.+.+-.--|+++ |
T Consensus 23 I~~GllvLvGV~~~Dt~~~a~~l~~Ki~~l------RiF~D~~gKmN-----~sv~di~G~iL~VSQFTL~adt~kG~RP 91 (145)
T COG1490 23 IGQGLLVLVGVTHDDTEEDADYLAEKILNL------RIFEDEEGKMN-----LSVQDVGGEILVVSQFTLYADTKKGRRP 91 (145)
T ss_pred cCCcEEEEEeecCCCCHHHHHHHHHHHhce------EeecCcccccc-----cCHHHcCCcEEEEEEEEEeecccCCCCC
Confidence 357899999999999999999999988642 33321110100 0111111112222 5
Q ss_pred cCCCCCcchHHHHHHHHHHhhcCCCcccCCceEEEEe
Q 007567 169 TYGDGEPTDNAARFYKWFTEQKEGGEWLQKLKYGVFG 205 (598)
Q Consensus 169 TyG~Geppdna~~F~~~L~~~~~~~~~l~~~~yaVFG 205 (598)
++-.+.+|+-|+++|+.+.+.-. ...-.+.-++||
T Consensus 92 sFs~aa~p~~A~~lYe~f~~~lr--~~~~~V~tG~Fg 126 (145)
T COG1490 92 SFSKAAKPDQAEELYEYFVELLR--ELGIKVETGRFG 126 (145)
T ss_pred CccccCChHHHHHHHHHHHHHHH--hcCCcceeeeee
Confidence 66788999999999998876421 122356677787
No 209
>PLN02928 oxidoreductase family protein
Probab=20.32 E-value=4.6e+02 Score=28.15 Aligned_cols=32 Identities=25% Similarity=0.199 Sum_probs=27.7
Q ss_pred ccCCceEEEEeecCCcchhHhHHHHHHHHHHHhcCCeEee
Q 007567 195 WLQKLKYGVFGLGNRQYEHFNKIAKVVDEILANQGAKRLV 234 (598)
Q Consensus 195 ~l~~~~yaVFGLGds~Y~~Fn~~~k~ld~~L~~lGA~ri~ 234 (598)
.|.|++++|+|+| .+|+.+.++|+.+|++-++
T Consensus 156 ~l~gktvGIiG~G--------~IG~~vA~~l~afG~~V~~ 187 (347)
T PLN02928 156 TLFGKTVFILGYG--------AIGIELAKRLRPFGVKLLA 187 (347)
T ss_pred CCCCCEEEEECCC--------HHHHHHHHHHhhCCCEEEE
Confidence 5889999999987 4899999999999997544
No 210
>COG4123 Predicted O-methyltransferase [General function prediction only]
Probab=20.23 E-value=63 Score=33.21 Aligned_cols=21 Identities=24% Similarity=0.379 Sum_probs=17.5
Q ss_pred CCcEEEEeCCCChHhHHHHHHHH
Q 007567 564 KVPIIMIGPGTGLAPFRGSWSRT 586 (598)
Q Consensus 564 ~~PiImIg~GTGiAPfr~flqer 586 (598)
..-|+.||+|+|++|+ |+..|
T Consensus 45 ~~~IlDlGaG~G~l~L--~la~r 65 (248)
T COG4123 45 KGRILDLGAGNGALGL--LLAQR 65 (248)
T ss_pred CCeEEEecCCcCHHHH--HHhcc
Confidence 5779999999999999 45555
No 211
>PRK09548 PTS system ascorbate-specific transporter subunits IICB; Provisional
Probab=20.20 E-value=3.6e+02 Score=31.44 Aligned_cols=45 Identities=13% Similarity=0.183 Sum_probs=36.1
Q ss_pred CCceEEEEEeCCCchHHHHHHHHHHHHHhhcCCceeEEEcCCCCC
Q 007567 103 GKQKVTIFFGTQTGTAEGFAKALADEARARYDKAIFKVVDIDDYA 147 (598)
Q Consensus 103 ~~~~v~I~YgSqTGtae~~A~~la~~l~~~~~~~~~~v~dl~~~~ 147 (598)
.+++|++.=||--||+-..+.++.+.|++++-...++-+++.++.
T Consensus 505 k~mKILvaCGsGiGTStmva~kIkk~Lke~GI~veV~~~~Vsev~ 549 (602)
T PRK09548 505 KPVRILAVCGQGQGSSMMMKMKIKKYLDKRGIPIIMDSCAVNDYK 549 (602)
T ss_pred cccEEEEECCCCchHHHHHHHHHHHHHHHcCCCeEEEEechHhCc
Confidence 567899999999999999999999999998754455556666554
No 212
>PRK00257 erythronate-4-phosphate dehydrogenase; Validated
Probab=20.09 E-value=2.5e+02 Score=30.71 Aligned_cols=34 Identities=35% Similarity=0.493 Sum_probs=28.9
Q ss_pred CcccCCceEEEEeecCCcchhHhHHHHHHHHHHHhcCCeEee
Q 007567 193 GEWLQKLKYGVFGLGNRQYEHFNKIAKVVDEILANQGAKRLV 234 (598)
Q Consensus 193 ~~~l~~~~yaVFGLGds~Y~~Fn~~~k~ld~~L~~lGA~ri~ 234 (598)
+..+.+++++|+|+|+ +|+.+.++|..+|.+-++
T Consensus 111 g~~l~gktvGIIG~G~--------IG~~va~~l~a~G~~V~~ 144 (381)
T PRK00257 111 GVDLAERTYGVVGAGH--------VGGRLVRVLRGLGWKVLV 144 (381)
T ss_pred CCCcCcCEEEEECCCH--------HHHHHHHHHHHCCCEEEE
Confidence 3568999999999884 799999999999998643
Done!