Query 007568
Match_columns 598
No_of_seqs 181 out of 992
Neff 6.9
Searched_HMMs 29240
Date Mon Mar 25 05:01:04 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007568.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/007568hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4epl_A Jasmonic acid-amido syn 100.0 2E-128 6E-133 1074.0 52.4 565 14-597 13-581 (581)
2 4b2g_A GH3-1 auxin conjugating 100.0 5E-127 2E-131 1065.9 46.1 567 14-597 16-589 (609)
3 4eql_A 4-substituted benzoates 100.0 6E-126 2E-130 1056.3 42.1 558 12-594 9-580 (581)
4 3qov_A Phenylacetate-coenzyme 99.9 6.3E-23 2.1E-27 221.9 21.9 389 24-553 11-420 (436)
5 2y27_A Phenylacetate-coenzyme 99.9 5.8E-22 2E-26 214.3 24.8 386 29-553 21-422 (437)
6 2y4o_A Phenylacetate-coenzyme 99.9 1.6E-21 5.4E-26 211.3 26.5 383 29-553 23-426 (443)
7 3hgu_A EHPF; phenazine, antibi 99.6 2.1E-15 7.3E-20 159.1 15.2 90 33-132 21-118 (369)
8 3etc_A AMP-binding protein; ad 99.6 1.2E-13 4E-18 155.2 23.7 133 309-472 339-497 (580)
9 2d1s_A Luciferase, luciferin 4 99.6 1.6E-13 5.3E-18 152.9 23.3 135 309-472 307-463 (548)
10 4fuq_A Malonyl COA synthetase; 99.6 3.5E-13 1.2E-17 148.4 25.2 135 308-472 265-421 (503)
11 3ni2_A 4-coumarate:COA ligase; 99.6 1E-13 3.4E-18 153.8 20.1 135 309-472 295-456 (536)
12 3fce_A D-alanine--poly(phospho 99.5 1.7E-13 5.9E-18 150.8 20.3 135 308-472 258-421 (512)
13 3e7w_A D-alanine--poly(phospho 99.5 4.5E-13 1.5E-17 147.6 23.1 136 307-472 256-420 (511)
14 3nyq_A Malonyl-COA ligase; A/B 99.5 5.2E-13 1.8E-17 147.1 22.2 179 311-525 272-474 (505)
15 1mdb_A 2,3-dihydroxybenzoate-A 99.5 3.2E-13 1.1E-17 150.0 19.8 131 310-471 297-451 (539)
16 1t5h_X 4-chlorobenzoyl COA lig 99.5 1.2E-12 4E-17 144.0 23.4 133 310-471 271-423 (504)
17 3g7s_A Long-chain-fatty-acid-- 99.5 1.9E-13 6.5E-18 152.0 16.6 135 309-472 294-461 (549)
18 3l8c_A D-alanine--poly(phospho 99.5 2.7E-13 9.4E-18 149.4 17.6 135 309-472 262-425 (521)
19 3kxw_A Saframycin MX1 syntheta 99.5 3.2E-13 1.1E-17 150.9 17.1 65 405-474 393-482 (590)
20 3ivr_A Putative long-chain-fat 99.5 9.6E-14 3.3E-18 152.7 11.6 133 310-472 271-422 (509)
21 2v7b_A Benzoate-coenzyme A lig 99.5 1.5E-12 5.2E-17 143.8 20.5 129 312-471 301-450 (529)
22 1pg4_A Acetyl-COA synthetase; 99.5 1.8E-12 6.1E-17 147.5 21.3 229 310-589 377-646 (652)
23 3rg2_A Enterobactin synthase c 99.5 7.9E-13 2.7E-17 149.2 18.3 134 309-472 300-456 (617)
24 3r44_A Fatty acyl COA syntheta 99.5 2.5E-12 8.4E-17 142.0 21.4 130 310-472 283-435 (517)
25 3c5e_A Acyl-coenzyme A synthet 99.4 2.9E-12 1E-16 143.4 21.4 133 310-472 321-478 (570)
26 3gqw_A Fatty acid AMP ligase; 99.4 1.5E-12 5E-17 144.9 18.0 62 406-472 406-483 (576)
27 3rix_A Luciferase, luciferin 4 99.4 1.5E-12 5.3E-17 144.7 18.1 135 309-472 305-461 (550)
28 1ry2_A Acetyl-coenzyme A synth 99.4 2.2E-12 7.6E-17 147.1 19.5 229 310-586 383-659 (663)
29 3o83_A Peptide arylation enzym 99.4 2.2E-13 7.5E-18 151.4 10.0 133 310-472 306-461 (544)
30 3ite_A SIDN siderophore synthe 99.4 4.7E-13 1.6E-17 149.0 12.4 134 309-472 292-449 (562)
31 3ipl_A 2-succinylbenzoate--COA 99.4 4E-12 1.4E-16 139.4 19.6 124 312-472 275-420 (501)
32 1amu_A GRSA, gramicidin synthe 99.4 4.3E-12 1.5E-16 141.8 19.5 63 406-472 367-452 (563)
33 4gr5_A Non-ribosomal peptide s 99.4 3.3E-12 1.1E-16 142.7 14.7 133 310-472 325-491 (570)
34 4dg8_A PA1221; ANL superfamily 99.4 1.8E-11 6.2E-16 138.5 20.5 134 310-472 275-441 (620)
35 4gs5_A Acyl-COA synthetase (AM 99.3 1.1E-12 3.8E-17 138.5 9.0 124 310-474 147-274 (358)
36 3tsy_A Fusion protein 4-coumar 99.3 2.6E-12 8.9E-17 152.5 12.1 134 310-472 343-503 (979)
37 1v25_A Long-chain-fatty-acid-C 99.3 6.8E-12 2.3E-16 139.3 12.8 133 310-472 292-457 (541)
38 2vsq_A Surfactin synthetase su 99.2 1.9E-10 6.5E-15 140.5 22.0 132 311-472 720-883 (1304)
39 3t5a_A Long-chain-fatty-acid-- 98.5 2.8E-07 9.7E-12 99.7 10.5 30 103-133 182-211 (480)
40 3lax_A Phenylacetate-coenzyme 97.3 0.00058 2E-08 58.9 7.4 90 448-553 2-93 (109)
41 3gxs_A Phenylacetate-coenzyme 97.1 0.0012 4E-08 57.2 7.4 90 447-553 1-93 (109)
42 2qmx_A Prephenate dehydratase; 23.9 2.9E+02 0.01 27.4 9.2 57 462-523 211-267 (283)
No 1
>4epl_A Jasmonic acid-amido synthetase JAR1; ANL adenylating enzyme, acyl acid-amido synthetase, adenylat ligase; HET: JAI; 2.01A {Arabidopsis thaliana}
Probab=100.00 E-value=1.8e-128 Score=1073.97 Aligned_cols=565 Identities=49% Similarity=0.911 Sum_probs=521.7
Q ss_pred CcchHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCChHhHhhhcCccCCCCCCC-cChH-HHhhcCCCCCcccchHHHHH
Q 007568 14 NNYECDIIRWFEYISENAGEVQRETLRRILEQNYDVEYLKKRLGDTKIQDMDAC-EMET-LYTSLVPLASHADLEPYIQR 91 (598)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~~Q~~~L~~iL~~n~~T~ygr~~~~~~~~~g~~~i-~~~e-dF~~~vPl~~Yed~~p~ieR 91 (598)
.+.+.+.++.|++.++||.++|+++|++||++|++|+|||+| ||++| ++++ |||++|||++|||++|||||
T Consensus 13 ~~~~~~~~~~~e~~~~~~~~vQ~~vL~~iL~~n~~Teygk~~-------gf~~i~~~~e~dF~~~VPi~~Yedl~pyIeR 85 (581)
T 4epl_A 13 TFDMNRVIDEFDEMTRNAHQVQKQTLKEILLKNQSAIYLQNC-------GLNGNATDPEEAFKSMVPLVTDVELEPYIKR 85 (581)
T ss_dssp CCCHHHHHHHHHHHHHTHHHHHHHHHHHHHHHTTTCHHHHTT-------TCC----CHHHHHHHHSCCBCHHHHHHHHHH
T ss_pred ccccHHHHHHHHHHHcCHHHHHHHHHHHHHHHhccCHHHHhc-------CCCcccCCHHHHHHHhCCCccHHHHHHHHHH
Confidence 345677789999999999999999999999999999999999 99999 9999 99999999999999999999
Q ss_pred HhcCCCCCCccccccceeecccccCCCcccccccChhhHHHHHHHHHHHHHHHHhcCCCCCCCceEEEeccCCccccCCC
Q 007568 92 IADGDTASLLTQEPITKLSLSSGTTEGRQKYVPFTKHSSQTTLQIFRLAAAYRSRVYPIREGGRILEFIYSSKQFKTKGG 171 (598)
Q Consensus 92 ~~~Ge~~~ll~~~~i~~f~~TSGTT~G~~K~IP~T~~~l~~~~~~~~~~~~~~~~~~P~~~~gk~l~~~~~~~~~~t~~G 171 (598)
|++||.++|||++||.+|++|||||+|++|+||+|+++++.+++++.+|..++++..++...||.|+|.+++.+.+|++|
T Consensus 86 i~~Ge~~~iL~~~pi~~f~~SSGTT~gk~K~IP~T~~~l~~~~~~~~~~~~~~~~~p~l~~~Gk~L~l~~~s~~~~t~~G 165 (581)
T 4epl_A 86 MVDGDTSPILTGHPVPAISLSSGTSQGRPKFIPFTDELMENTLQLFRTAFAFRNRDFPIDDNGKALQFIFSSKQYISTGG 165 (581)
T ss_dssp HHTTCCSSSSSSSCCSEEEEEEEEETTEEEEEEECHHHHHHHHHHHHHHHHHHHHHSCCCTTCEEEEECCCCCCEECTTS
T ss_pred HHCCCCCCccCCCCcceEEecCCCCCCCccccccCHHHHHHHHHHHHHHHHHHhhCCccccCCcEEEEeecCCcccCCCC
Confidence 99999889999999999999999999999999999999999877788888888773334325899998889999999999
Q ss_pred ceEeccccccccchhHhhhhhhhhcccCChhhhhccCChHHHHHHHHHhcccCCCCceEEEecchhHHHHHHHHHHHhHH
Q 007568 172 LTAGTATTHYYASEEFKIKQEKTKSFTCSPEEVISSGEYKQSTYCHLLLGLFFSDQVEFITSTFAYSIVQAFTAFEECWQ 251 (598)
Q Consensus 172 ip~g~~S~~~~~~~~f~~~~~~~~~~~~~P~~~~~~~d~~~~~Y~~Ll~~L~~~~~l~~i~~~f~~~l~~~~~~le~~w~ 251 (598)
+|+|++|++++++.+|+..|.|+...|++|.+++.++|..+++||||||||.++++|.+|+++||++|+.+++.|+++|+
T Consensus 166 i~~G~~S~~~~~s~~f~~~p~~~~~~~t~P~e~i~~~D~~~~~Y~~Ll~~L~~~~~v~~i~a~fas~ll~~~~~l~~~We 245 (581)
T 4epl_A 166 VPVGTATTNVYRNPNFKAGMKSITSPSCSPDEVIFSPDVHQALYCHLLSGILFRDQVQYVFAVFAHGLVHAFRTFEQVWE 245 (581)
T ss_dssp CEEECHHHHHHTSTTHHHHHGGGSCCBSSCHHHHTCSCHHHHHHHHHHHHHHTGGGEEEEEEEEHHHHHHHHHHHHHHHH
T ss_pred ceeeechhhhhhcchhhcCchhhhhcccCCHHHhcCCCHHHHHHHHHHHhhhccccccEEeeccHHHHHHHHHHHHHHHH
Confidence 99999999999999999999998888999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhccCCCCCCCcHHHHHhhhccCCCCHHHHHHHHHHhcccccCCccCcccccCCCCceeEEEEccChHHHHHHH
Q 007568 252 DICIDVREGSLSSSRITLPKMRKAVLDTISPKPYLASKIEVACKKLESLDWFGLVPKLWPNAKYVYSIMTGSMQHYLKKL 331 (598)
Q Consensus 252 el~~dI~~g~~~~~~~~~~~~r~~l~~~l~~~p~~A~~L~~~~~~~~~~~~~gi~~~lwP~l~~i~~~~~g~~~~y~~~l 331 (598)
++|+||++|+++ ++++++++|+++++.|+|+|++|++|+++|.+.+ +|.|++++|||||++|.||++|+|.+|++++
T Consensus 246 ~l~~dI~~gtl~-~~it~~~~R~~l~~v~~p~~~~a~~l~~~~~~~~--~~~g~i~~lWPnl~~i~~~~~G~~~~Y~~~l 322 (581)
T 4epl_A 246 EIVTDIKDGVLS-NRITVPSVRTAMSKLLTPNPELAETIRTKCMSLS--NWYGLIPALFPNAKYVYGIMTGSMEPYVPKL 322 (581)
T ss_dssp HHHHHHHHTCCC-TTCCCHHHHHHHHTTCCCCHHHHHHHHHHHHHSS--TTTTHHHHHCTTCCCEEEECSGGGGGGHHHH
T ss_pred HHHHHHHhcCCC-cCCCCHHHHHHHhCCCCCCHHHHHHHHHHhCCCC--ccccCHHHhCCCCceEEEEeCCChHHHHHHH
Confidence 999999999999 8899999999999999999999999999998711 3999999999999999999999999999999
Q ss_pred HHHhCCCCeecCcccCCCcceeecCCCCCCCCCcceeeecCceEEEEEecCCcccCCCCCCCCCCCCccccCCCCCCCCe
Q 007568 332 RHYAGDLPLVSADYGSTESWIGVNVDPSLPPEDVTFAVIPTFSYFEFIPIHRRKQDCNSAIDDFIEDEPVPLSQVKLGQE 411 (598)
Q Consensus 332 ~~~~g~~~i~~~~ygaSE~~i~~~~~~~~~~~~~~~~l~~~~~~~EFip~~~~~~~~~~~~~~~~~~~~l~~~eve~G~~ 411 (598)
++++|++|+++.+|+||||++|+|++|.++++..+|+++|+.+||||||+++.++ +++++++++|||+|++
T Consensus 323 ~~~~g~~p~~~~~Y~ASEg~~gi~~~p~~~~~~~~~~L~p~~~ffEFiP~~~~~~---------~~~~~v~l~eve~G~~ 393 (581)
T 4epl_A 323 RHYAGDLPLVSHDYGSSEGWIAANVTPRLSPEEATFAVIPNLGYFEFLPVSETGE---------GEEKPVGLTQVKIGEE 393 (581)
T ss_dssp HHHHTTSCEEECCEEETTEEEEECCCTTSCTTTCCEEECTTSCEEEEEEC----------------CCCEEGGGCCTTCE
T ss_pred HHHcCCCccccCceeccceeeeeecCCCCCccccceeecCCcEEEEEEecccccC---------CCCceeeHHHcCCCCe
Confidence 9999999999999999999999999999988778999999999999999886543 3578999999999999
Q ss_pred EEEEEcccCceeccccCCEEEEccccCCCCEEEEEeecCceEeeceeecCHHHHHHHHHHHHhhhhccCCeeeeeEEeec
Q 007568 412 YEIVLTSFTGLYRYRLGDVVEVAGFHKGTPKLNFVCRRKLILTVNIDKNTEKDLQLVVDRGSQLLNKTGAELVDFTSHAD 491 (598)
Q Consensus 412 yeLVvTt~~Gl~RYr~GDvv~v~g~~~~~P~i~f~gR~~~~l~~~Gekv~e~~v~~av~~~~~~l~~~g~~l~~f~~~~~ 491 (598)
|||||||.+||||||+||+|+|+||+|++|+|+|+||.+++||++||||+|++|+.||.++++.|..+|+.|.||++.+|
T Consensus 394 YelviTt~~GL~RYr~GD~v~v~g~~~~~p~~~~~gR~~~~l~~~Ge~~~~~~v~~al~~a~~~l~~~~~~l~eft~~~d 473 (581)
T 4epl_A 394 YEVVITNYAGLYRYRLGDVVKVIGFYNNTPQLKFICRRNLILSINIDKNTERDLQLSVESAAKRLSEEKIEVIDFSSYID 473 (581)
T ss_dssp EEEEEESTTSCSSEEEEEEEEEEEEETTEEEEEEEEETTCCBCSSSCCBCHHHHHHHHHHHHHHHHTTTCCEEEEEEEEE
T ss_pred EEEEEeeccceeeEEcCCEEEEecccCCCcEEEEEeecCCeEEeeeeECCHHHHHHHHHHHHHhhcccCCeEEEEEEecC
Confidence 99999999999999999999999999999999999999999999999999999999999999877678999999999998
Q ss_pred cCCCCceEEEEEEecCCCccchHHHHHHHHHhhcCCchhHhhhhcCCcCCeEEEEeccchHHHHHHHHhcCCCCCCCCCC
Q 007568 492 IVNQPGHYIIYWEIKGDVEEGVLNQCCHEMDVSFVDPGYVVSRRTNSIGPLELCIVKRGAFRMILDYFVGNGAALSQFKT 571 (598)
Q Consensus 492 ~~~~~~~Y~~~vE~~~~~~~~~l~~~~~~ld~~l~n~~Y~~~R~~g~l~p~~v~~v~~g~f~~~~~~~~~~G~~~~Q~K~ 571 (598)
.+..||||++|||+.+.++.+.+++||..||++|.|++|+.+|..|+|+||+|++|++|+|++|+++++++|++++|||+
T Consensus 474 ~~~~p~hyv~~wE~~~~~~~~~l~~~~~~Ld~~L~n~~Y~~~R~~~~L~pl~v~~v~~G~F~~l~~~~~~~G~~~~Q~K~ 553 (581)
T 4epl_A 474 VSTDPGHYAIFWEISGETNEDVLQDCCNCLDRAFIDAGYVSSRKCKTIGALELRVVAKGTFRKIQEHFLGLGSSAGQFKM 553 (581)
T ss_dssp CSSSSCEEEEEEEESSCCCHHHHHHHHHHHHHHCCCHHHHHHHHHTSSCCCEEEEECTTHHHHHHHHHHTTC------CC
T ss_pred CCCCCCcEEEEEeecCCCCHHHHHHHHHHHHHHhCChhHHHHHhcCCCCCcEEEEeCcchHHHHHHHHHhCCCCCCCcCC
Confidence 88889999999999776776789999999999988999999999999999999999999999999999999999999999
Q ss_pred Cccc--CCHHHHHHHhhccccccccccC
Q 007568 572 PRCT--SNQVLVRILNDWTIKRFHSTAY 597 (598)
Q Consensus 572 Pr~~--~~~~~~~~l~~~~~~~~~~~~~ 597 (598)
|||+ ++++++++|+++|+++|+|+++
T Consensus 554 PR~~~~~~~~~~~~L~~~v~~~~~s~~~ 581 (581)
T 4epl_A 554 PRCVKPSNAKVLQILCENVVSSYFSTAF 581 (581)
T ss_dssp CSSCCTTCHHHHHHHHTTEEEEEECCCC
T ss_pred CeeecCCCHHHHHHHHhcccccccCCCC
Confidence 9999 9999999999999999999875
No 2
>4b2g_A GH3-1 auxin conjugating enzyme; signaling protein, ignaling protein, adenylate, amino acid conjugation, plant growth; HET: V1N; 2.40A {Vitis vinifera}
Probab=100.00 E-value=5.1e-127 Score=1065.93 Aligned_cols=567 Identities=34% Similarity=0.681 Sum_probs=516.7
Q ss_pred CcchHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCChHhHhhhcCccCCCCCCCcChHHHhhcCCCCCcccchHHHHHHh
Q 007568 14 NNYECDIIRWFEYISENAGEVQRETLRRILEQNYDVEYLKKRLGDTKIQDMDACEMETLYTSLVPLASHADLEPYIQRIA 93 (598)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~~Q~~~L~~iL~~n~~T~ygr~~~~~~~~~g~~~i~~~edF~~~vPl~~Yed~~p~ieR~~ 93 (598)
.+.+++.++.|++.++||.++|+++|++||++|++|+|||+| ||++|++++||+++|||++|||++||||||+
T Consensus 16 ~~~~~~~l~~~e~~~~~~~~~Q~~~L~~lL~~~~~T~~gr~~-------gf~~i~~~~dF~~~VPv~~Yedl~p~ieRi~ 88 (609)
T 4b2g_A 16 SEKDAKALQFIEEMTRNADSVQERVLAEILSRNGETEYLKRF-------KLEGSTVRETFKSKIPVIKYEDLQPEIQRIA 88 (609)
T ss_dssp CHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHSTTSHHHHTT-------CCTTCCSHHHHHHHSCCBCHHHHHHHHHHHH
T ss_pred ccchHHHHHHHHHHHcCHHHHHHHHHHHHHHHhcCChHHHhc-------CCCCCCCHHHHHHhCCCccHHHHHHHHHHHh
Confidence 556777899999999999999999999999999999999999 9999999999999999999999999999999
Q ss_pred cCCCCCCccccccceeecccccCCCcccccccChhhHHHHHHHHHHHHHHHHhcCC-CCCCCceEEEeccCCccccCCCc
Q 007568 94 DGDTASLLTQEPITKLSLSSGTTEGRQKYVPFTKHSSQTTLQIFRLAAAYRSRVYP-IREGGRILEFIYSSKQFKTKGGL 172 (598)
Q Consensus 94 ~Ge~~~ll~~~~i~~f~~TSGTT~G~~K~IP~T~~~l~~~~~~~~~~~~~~~~~~P-~~~~gk~l~~~~~~~~~~t~~Gi 172 (598)
+||.++|||++||.+|++|||||+|++|+||+|+++++.+++++++|..++++++| +. .||.|+|.+++.+.+|++|+
T Consensus 89 ~Ge~~~il~~~~i~~f~~SSGTT~gk~K~IP~t~~~l~~~~~~~~~~~~~~~~~~p~~~-~Gk~l~l~~~~~~~~t~~Gi 167 (609)
T 4b2g_A 89 NGDRSAILSAHPISEFLTSSGTSAGERKLMPTIQEELDRRQMLYSLLMPVMNLYVPGLD-KGKGLYFLFVKSETRTPGGL 167 (609)
T ss_dssp TTCCSSSSCSSCCCEEEEEEEEETTEEEEEEECTTHHHHHHHHHHHHHHHHHHHSCCGG-GSEEEECCCCCCCEECTTSC
T ss_pred cCCCCCccCCCCCCeEEeCCCCCCCCceeeecCHHHHHHHHHHHHHHHHHHHhcCCccc-CCCeEEEcccCCcccCCCCc
Confidence 99977999999999999999999999999999999999988889999999999999 66 79999988888899999999
Q ss_pred eEeccccccccchhHhhhhhhhhcccCChhhhhccCChHHHHHHHHHhcccCCCCceEEEecchhHHHHHHHHHHHhHHH
Q 007568 173 TAGTATTHYYASEEFKIKQEKTKSFTCSPEEVISSGEYKQSTYCHLLLGLFFSDQVEFITSTFAYSIVQAFTAFEECWQD 252 (598)
Q Consensus 173 p~g~~S~~~~~~~~f~~~~~~~~~~~~~P~~~~~~~d~~~~~Y~~Ll~~L~~~~~l~~i~~~f~~~l~~~~~~le~~w~e 252 (598)
|+|++|++++++.+|+..|..+...|++|.+++.++|..+++||||||||.++++|+.|+++|+++++.+++.|+++|++
T Consensus 168 ~~g~~s~~~~~s~~f~~~p~~~~~~~~sP~~~i~~~D~~~~~Y~~Ll~~L~~~~~v~~lsa~fa~~ll~~~~~L~~~Wee 247 (609)
T 4b2g_A 168 LARPVLTSYYKSEHFKTRPYDPYNVYTSPNEAILCADSFQSMYTQMLCGIYERKQVLRLGAVFASGLLRAIRFLQLNWHQ 247 (609)
T ss_dssp EEECHHHHHHTSHHHHTCCCCTTCCBSSCHHHHHCSCHHHHHHHHHHHHHHTGGGEEEEEEEEHHHHHHHHHHHHHHHHH
T ss_pred ccccchhhhhccchhhccccchhhcccCcHHHhcCcCHHHHHHHHHHHHhhcccccceeeehhHHHHHHHHHHHHHHHHH
Confidence 99999999999999998887677899999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhccCCCCCCCcHHHHHhhhccCCCCHHHHHHHHHHhcccccCCccCcccccCCCCceeEEEEccChHHHHHHHH
Q 007568 253 ICIDVREGSLSSSRITLPKMRKAVLDTISPKPYLASKIEVACKKLESLDWFGLVPKLWPNAKYVYSIMTGSMQHYLKKLR 332 (598)
Q Consensus 253 l~~dI~~g~~~~~~~~~~~~r~~l~~~l~~~p~~A~~L~~~~~~~~~~~~~gi~~~lwP~l~~i~~~~~g~~~~y~~~l~ 332 (598)
+|+||++|+++ ++++++.+|.++++.++|+|++|++|+++|.+ . +|.|++++|||||++|+||++|+|.+|+++++
T Consensus 248 l~~dI~~gtl~-~~it~~~~r~a~~~~lsp~~~la~~l~~~~~~-~--~~~g~i~~lWPnlk~l~~~~tG~~~~Y~~~l~ 323 (609)
T 4b2g_A 248 LTHDIRTGTLS-PKITDPSVRNCVAGVLKPDPELADLVAGECSK-D--NWEGIITRIWPNTKYLDVIVTGAMAQYIPTLD 323 (609)
T ss_dssp HHHHHHHTCCC-TTCCCHHHHHHTTTTCCCCHHHHHHHHHHHTS-S--CCTTTHHHHSTTCCEEEEECSGGGGGGHHHHH
T ss_pred HHHHHHhccCC-cCCCCHHHHHHHhcCCCcCHHHHHHHHHHhCC-C--ccccCHHHhCCCCcEEEEEccCChHHHHHHHH
Confidence 99999999999 88999999999999999999999999999998 3 69999999999999999999999999999999
Q ss_pred HHhCCCCeecCcccCCCcceeecCCCCCCCCCcceeeecCceEEEEEecCCcccCCCCCCCCCCCCccccCCCCCCCCeE
Q 007568 333 HYAGDLPLVSADYGSTESWIGVNVDPSLPPEDVTFAVIPTFSYFEFIPIHRRKQDCNSAIDDFIEDEPVPLSQVKLGQEY 412 (598)
Q Consensus 333 ~~~g~~~i~~~~ygaSE~~i~~~~~~~~~~~~~~~~l~~~~~~~EFip~~~~~~~~~~~~~~~~~~~~l~~~eve~G~~y 412 (598)
+++|++|+++.+|+||||++|+|++|.|+++..+|+++|+.+||||||+++.+.+ .++.+++++|+++|||+|++|
T Consensus 324 ~~~g~~p~~~~~Y~ASEg~~gi~~~p~~~p~~~~~~L~p~~~ffEFIP~~~~~~~----~~~~~~~~~v~l~eVe~G~~Y 399 (609)
T 4b2g_A 324 YYSGGLPLACTMYASSECYFGLNLNPMSKPSEVSYTIMPNMAYFEFLPHEHSSIP----LSRDSPPRLVDLAHVEVGKEY 399 (609)
T ss_dssp HHHTSCCEECCEEECSSCEEEECSCTTSCGGGCCEEECTTSCEEEEEEGGGTTSC----CCSSSCCCCEEGGGCCTTCEE
T ss_pred HHcCCCccccCcccccceeeeeecCCCCCcccCceeecCCcEEEEEEeccccccc----cccCCCCccccHhHcCCCCeE
Confidence 9999999999999999999999999999887789999999999999998864100 001256889999999999999
Q ss_pred EEEEcccCceeccccCCEEEEccccCCCCEEEEEeecCceEeeceeecCHHHHHHHHHHHHhhhhccCCeeeeeEEeecc
Q 007568 413 EIVLTSFTGLYRYRLGDVVEVAGFHKGTPKLNFVCRRKLILTVNIDKNTEKDLQLVVDRGSQLLNKTGAELVDFTSHADI 492 (598)
Q Consensus 413 eLVvTt~~Gl~RYr~GDvv~v~g~~~~~P~i~f~gR~~~~l~~~Gekv~e~~v~~av~~~~~~l~~~g~~l~~f~~~~~~ 492 (598)
||||||++||||||+||+|+|+||++++|+|+|+||.+++||++||||+|++|+.||.+|++.|+.+|++|.||++.+|.
T Consensus 400 elViTt~~GL~RYr~GD~v~v~~f~~~~p~i~~~gR~~~~l~~~Geki~~~~v~~av~~a~~~l~~~g~~l~eft~~~d~ 479 (609)
T 4b2g_A 400 ELVITTYAGLYRYRVGDILRVTGFHNSAPQFHFVRRKNVLLSIDSDKTDEAELQKAVDNASKLLREVNTSVVEYTSFADT 479 (609)
T ss_dssp EEEEECTTSCCSEEEEEEEEEEEEETTEEEEEEEEETTCCBCSSSCCBCHHHHHHHHHHHHHGGGGTTEEEEEEEEEEEC
T ss_pred EEehhhhhhhhheecCCEEEEeecCCCCcEEEEEEecCCeEEccccCCCHHHHHHHHHHHHHhhhccCCeEEEEEEecCC
Confidence 99999999999999999999999999999999999999999999999999999999999997776789999999999988
Q ss_pred CCCCceEEEEEEec-----CCCccchHHHHHHHHHhhcCCchhHhhh-hcCCcCCeEEEEeccchHHHHHHHHhcCCCCC
Q 007568 493 VNQPGHYIIYWEIK-----GDVEEGVLNQCCHEMDVSFVDPGYVVSR-RTNSIGPLELCIVKRGAFRMILDYFVGNGAAL 566 (598)
Q Consensus 493 ~~~~~~Y~~~vE~~-----~~~~~~~l~~~~~~ld~~l~n~~Y~~~R-~~g~l~p~~v~~v~~g~f~~~~~~~~~~G~~~ 566 (598)
+..||||++|||+. ..++++.+++||..||++| |++|+.+| +.++|+||+|++|++|+|++|+++++++|+++
T Consensus 480 ~~~p~Hyv~~wEl~~~~~~~~~~~~~l~~~~~~LD~~L-N~~Y~~~R~~~~~L~pl~v~~v~~GtF~~~~~~~~~~G~~~ 558 (609)
T 4b2g_A 480 KTIPGHYVIYWELLVKDSANSPSDELLGQCCLAMEESL-NSVYRQGRVADNSIGPLEIRVVKSGTFEELMDYAISRGASI 558 (609)
T ss_dssp SSSSCEEEEEEEEEESCGGGCCCHHHHHHHHHHHHHHS-CHHHHHHHHTSCCSCCCEEEEECTTCSCC------------
T ss_pred CCCCCcEEEEEEEecccccCCCCHHHHHHHHHHHHHHh-CHHHHHHhhcCCccCCcEEEEeCCCcHHHHHHHHHhCCCCC
Confidence 88899999999985 2355679999999999998 99999999 66699999999999999999999999999999
Q ss_pred CCCCCCcccCCHHHHHHHhhccccccccccC
Q 007568 567 SQFKTPRCTSNQVLVRILNDWTIKRFHSTAY 597 (598)
Q Consensus 567 ~Q~K~Pr~~~~~~~~~~l~~~~~~~~~~~~~ 597 (598)
||||+|||+++++++++|+++|+++|+|+++
T Consensus 559 gQ~K~PR~~~~~~~~~~L~~~v~~~~~s~~~ 589 (609)
T 4b2g_A 559 NQYKVPRCVNFTPIMELLDSRVVSSHFSPAL 589 (609)
T ss_dssp ----CCSSCC--CCHHHHHTTEEEEEECCSC
T ss_pred CCcCCCcccCCHHHHHHHHhcccccccCCCC
Confidence 9999999999999999999999999999974
No 3
>4eql_A 4-substituted benzoates-glutamate ligase GH3.12; firefly luciferase family, acyl adenylase, amino acid conjug ligase; HET: AMP SAL; 1.80A {Arabidopsis thaliana} PDB: 4epm_A* 4eq4_A* 4ewv_A*
Probab=100.00 E-value=5.7e-126 Score=1056.32 Aligned_cols=558 Identities=35% Similarity=0.660 Sum_probs=467.8
Q ss_pred cCCcchHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCChHhHhhhcCccCCCCCCCcChHHHhhcCCCCCcccchHHHHH
Q 007568 12 YGNNYECDIIRWFEYISENAGEVQRETLRRILEQNYDVEYLKKRLGDTKIQDMDACEMETLYTSLVPLASHADLEPYIQR 91 (598)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~Q~~~L~~iL~~n~~T~ygr~~~~~~~~~g~~~i~~~edF~~~vPl~~Yed~~p~ieR 91 (598)
-..+.+++.++.|++.++||.++|+++|++||++|++|+|||+| |++|++++|||++|||++|||++|||+|
T Consensus 9 ~~~~~~~~~~~~~e~~~~~~~~vQ~~vL~~iL~~n~~Teygk~~--------f~~i~~~~~F~~~VPi~~Yedl~pyIeR 80 (581)
T 4eql_A 9 PIFDINETFEKQLKDLTSNVKSIQDNLLEEIITPNTKTEYLQRF--------LIDRFDKELFKKNVPIVSYEDIKPYLDR 80 (581)
T ss_dssp -----CHHHHHHHHHHHHCHHHHHHHHHHHHHHHHTTSHHHHHT--------TCCSCCHHHHHHHSCCBCHHHHHHHHHH
T ss_pred cccCCcHHHHHHHHHHHcCHHHHHHHHHHHHHHhhccCHHHHHH--------hhcCCCHHHHHHhCCCccHHHHHHHHHH
Confidence 34566778899999999999999999999999999999999999 8889999999999999999999999999
Q ss_pred HhcCCCCCCccccccceeecccccCCCcccccccChhhHHHHHHHHHHHHHHHHhcCC-CCCCCceEEEeccCCccccCC
Q 007568 92 IADGDTASLLTQEPITKLSLSSGTTEGRQKYVPFTKHSSQTTLQIFRLAAAYRSRVYP-IREGGRILEFIYSSKQFKTKG 170 (598)
Q Consensus 92 ~~~Ge~~~ll~~~~i~~f~~TSGTT~G~~K~IP~T~~~l~~~~~~~~~~~~~~~~~~P-~~~~gk~l~~~~~~~~~~t~~ 170 (598)
|++||.++|||++||.+|++|||||+|++|+||+|+++++.+++++++|..++++++| +. .||.|+|.+.+.+.+|++
T Consensus 81 i~~Ge~~~iL~~~pi~~F~~SSGTT~g~~K~IP~T~e~l~~~~~~~~~~~~~~~~~~p~~~-~Gk~l~l~~~~~~~~t~~ 159 (581)
T 4eql_A 81 VVNGESSDVISARTITGFLLSSGTSGGAQKMMPWNNKYLDNLTFIYDLRMQVITKHVKGVE-EGKGMMFLFTKQESMTPS 159 (581)
T ss_dssp HHTTCCGGGTCSSCCCEEEEEEEEETTEEEEEEECHHHHHHHHHHHHHHHHHHHHHCCSCT-TSEEEECCCCCCCEECTT
T ss_pred HHcCCCCcccCCCCCCeEEeCCCCCCCCccccccCHHHHHHHHHHHHHHHHHHHhcCCccc-cCCEEEEeccCCcccCCC
Confidence 9999977999999999999999999999999999999999988889999999999999 66 899999888888999999
Q ss_pred CceEeccccccccchhHhhhhhhhhcccCChhhhhccCChHHHHHHHHHhcccCCCCceEEEecchhHHHHHHHHHHHhH
Q 007568 171 GLTAGTATTHYYASEEFKIKQEKTKSFTCSPEEVISSGEYKQSTYCHLLLGLFFSDQVEFITSTFAYSIVQAFTAFEECW 250 (598)
Q Consensus 171 Gip~g~~S~~~~~~~~f~~~~~~~~~~~~~P~~~~~~~d~~~~~Y~~Ll~~L~~~~~l~~i~~~f~~~l~~~~~~le~~w 250 (598)
|+|+|++|++++++.+|+..|..+...|++|.+++.++|..+++||||||||.++++|+.|+++|+++++.+++.|+++|
T Consensus 160 G~~~g~~s~~~~~~~~f~~~p~~~~~~~~~P~~~i~~~d~~~~~Y~~ll~~L~~~~~v~~isa~fa~~ll~~~~~L~~~w 239 (581)
T 4eql_A 160 GLPARVATSSYFKSDYFKNRPSNWYYSYTSPDEVILCPNNTESLYCHLLCGLVQRDEVVRTGSIFASVMVRAIEVLKNSW 239 (581)
T ss_dssp SCEEECHHHHHHTSHHHHTCCCSGGGCBSSCHHHHHCSCHHHHHHHHHHHHHHTGGGEEEEEEEEHHHHHHHHHHHHHHH
T ss_pred CeeecccchhhhhcchhhcccchhhhcccCchHhhcCCCHHHHHHHHHHHHhhcccccceeeehhHHHHHHHHHHHHHHH
Confidence 99999999999999999998866678899999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhccCCCCCCCcHHHHHhhhccCC-CCHHHHHHHHHHhcccccCCccCcccccCCCCceeEEEEccChHHHHH
Q 007568 251 QDICIDVREGSLSSSRITLPKMRKAVLDTIS-PKPYLASKIEVACKKLESLDWFGLVPKLWPNAKYVYSIMTGSMQHYLK 329 (598)
Q Consensus 251 ~el~~dI~~g~~~~~~~~~~~~r~~l~~~l~-~~p~~A~~L~~~~~~~~~~~~~gi~~~lwP~l~~i~~~~~g~~~~y~~ 329 (598)
+++|+||++|+++ ++++++++|.++...++ |||++|++|+++|.+ . +|.|++++|||||++|+||++|+|.+|++
T Consensus 240 eel~~dI~~gtl~-~~it~~~~r~~~~~~L~~P~p~~A~~l~~~~~~-~--~~~g~i~~lWPnl~~l~~~~~G~~~~Y~~ 315 (581)
T 4eql_A 240 EELCSNIRSGHLS-NWVTDLGCQNSVSLVLGGPRPELADTIEEICNQ-N--SWKGIVKRLWPNTKYIETVVTGSMGQYVP 315 (581)
T ss_dssp HHHHHHHHHTCCC-TTCCCHHHHHHHHHHHCSCCHHHHHHHHHHHTS-S--CCTTHHHHHSTTCCEEEEECSGGGGGGHH
T ss_pred HHHHHHHHhCCCc-ccCcChHHHHHHHHHhcCCCHHHHHHHHHHhcC-C--CccCCHHHhCCCCcEEEEEcCCChHHHHH
Confidence 9999999999999 88999999999999997 999999999999997 3 69999999999999999999999999999
Q ss_pred HHHHHhCCCCeecCcccCCCcceeecCCCCCCCCCcceeeecCceEEEEEecCCcccCCCCCCCCCCCCccccCCCCCCC
Q 007568 330 KLRHYAGDLPLVSADYGSTESWIGVNVDPSLPPEDVTFAVIPTFSYFEFIPIHRRKQDCNSAIDDFIEDEPVPLSQVKLG 409 (598)
Q Consensus 330 ~l~~~~g~~~i~~~~ygaSE~~i~~~~~~~~~~~~~~~~l~~~~~~~EFip~~~~~~~~~~~~~~~~~~~~l~~~eve~G 409 (598)
++++++|++|+++.+|+||||++|+|++|.|+++..+|+++|+.+||||||.++. +++++++++|||.|
T Consensus 316 ~l~~~~g~~p~~~~~Y~ASEg~~gi~~~p~~~~~~~~~~L~~~~~ffEFip~~~~-----------~~~~~v~l~eVe~G 384 (581)
T 4eql_A 316 MLNYYCNDLPLVSTTYGSSETTFGINLDPLCKPEDVSYTFMPNMSYFEFIPMDGG-----------DKNDVVDLEDVKLG 384 (581)
T ss_dssp HHHHHHTTCCEECCEEECSSCEEEECSCTTSCGGGCCEEECTTSSEEEEEECSTT-----------CCSSCEEGGGCCTT
T ss_pred HHHHHcCCCccccCccccccceeeeccCCCCCcccCceeecCCcEEEEEEecccc-----------CCCcEeCHHHcCCC
Confidence 9999999999999999999999999999999877678999999999999998754 24789999999999
Q ss_pred CeEEEEEcccCceeccccCCEEEEccccCCCCEEEEEeecCceEeeceeecCHHHHHHHHHHHHhhhhccCCeeeeeEEe
Q 007568 410 QEYEIVLTSFTGLYRYRLGDVVEVAGFHKGTPKLNFVCRRKLILTVNIDKNTEKDLQLVVDRGSQLLNKTGAELVDFTSH 489 (598)
Q Consensus 410 ~~yeLVvTt~~Gl~RYr~GDvv~v~g~~~~~P~i~f~gR~~~~l~~~Gekv~e~~v~~av~~~~~~l~~~g~~l~~f~~~ 489 (598)
++|||||||.+||||||+||+|+|+||++++|+|+|+||.+++||++||||+|++|++||.++++.|+.+|++|.||++.
T Consensus 385 ~~YelViTt~~GL~RYr~GD~v~v~~f~~~~p~i~f~gR~~~~l~~~Gekl~~~~v~~al~~a~~~l~~~g~~l~eft~~ 464 (581)
T 4eql_A 385 CTYEPVVTNFAGLYRMRVGDIVLVTGFYNNAPQFKFVRRENVVLSIDSDKTNEEDLFKAVSQAKLVLESSGLDLKDFTSY 464 (581)
T ss_dssp CEEEEEEECSSSCCSEECCEEEEEEEEETTEEEEEEEEETTEEECSSSCCEEHHHHHHHHHHC--------------CEE
T ss_pred ceEEEEEeeccceeeEEcCCEEEEcccCCCCcEEEEEEecCCEEEeeeeECCHHHHHHHHHHHHHhhhhcCCEEEEEEEe
Confidence 99999999999999999999999999999999999999999999999999999999999999987665789999999999
Q ss_pred eccCCCCceEEEEEEecC-----------CCccchHHHHHHHHHhhcCCchhHhhh-hcCCcCCeEEEEeccchHHHHHH
Q 007568 490 ADIVNQPGHYIIYWEIKG-----------DVEEGVLNQCCHEMDVSFVDPGYVVSR-RTNSIGPLELCIVKRGAFRMILD 557 (598)
Q Consensus 490 ~~~~~~~~~Y~~~vE~~~-----------~~~~~~l~~~~~~ld~~l~n~~Y~~~R-~~g~l~p~~v~~v~~g~f~~~~~ 557 (598)
+|.+..||||++|||+.. .++++.+++||..||++| |++|+.+| +.++|+||+|++|++|+|++|++
T Consensus 465 ~~~~~~p~Hy~~~wel~~~~~~~~~~~~~~~~~~~l~~~~~~LD~~L-N~~Y~~~R~~~~~L~pl~i~~v~~GtF~~~~~ 543 (581)
T 4eql_A 465 ADTSTFPGHYVVYLEVDTKEGEEKETAQFELDEEALSTCCLVMEESL-DNVYKRCRFKDGSIGPLEIRVVRQGTFDSLMD 543 (581)
T ss_dssp EECSSSSBEEEEECC---------------CCHHHHHHHHHHHHHTS-CHHHHHHHHTTCCBCCCEEEC-----------
T ss_pred cCCCCCCCeEEEEEEEecccccccccccCCCCHHHHHHHHHHHHHHh-CHHHHHHHhcCCccCCcEEEEeCCCcHHHHHH
Confidence 988888999999999842 144478999999999998 99999999 66799999999999999999999
Q ss_pred HHhcCCCCCCCCCCCcccCCHHHHHHHhhcccccccc
Q 007568 558 YFVGNGAALSQFKTPRCTSNQVLVRILNDWTIKRFHS 594 (598)
Q Consensus 558 ~~~~~G~~~~Q~K~Pr~~~~~~~~~~l~~~~~~~~~~ 594 (598)
+++++|+++||||+|||+++++++++|+++|+++|+|
T Consensus 544 ~~~~~G~~~gQ~K~PR~~~~~~~~~~L~~~v~~~~~s 580 (581)
T 4eql_A 544 FFISQGASTGQYKTPRCIKSGKALQVLETCVVAKFFS 580 (581)
T ss_dssp ---------------------------------CEEC
T ss_pred HHHhCCCCCCCcCCCcccCCHHHHHHHHhcchheeec
Confidence 9999999999999999999999999999999999997
No 4
>3qov_A Phenylacetate-coenzyme A ligase; acetyl-COA synthetase-like, structural genomics, joint cente structural genomics, JCSG; HET: MSE ADP COA; 2.20A {Bacteroides thetaiotaomicron} PDB: 3s89_A*
Probab=99.90 E-value=6.3e-23 Score=221.87 Aligned_cols=389 Identities=16% Similarity=0.169 Sum_probs=228.1
Q ss_pred HHHHH-HhHHHHHHHHHHHHHHHhcCChHhHhhhcCccCCCCC--CCcChHHHhhcCCCCCcccchHHHHHHhcCCCCCC
Q 007568 24 FEYIS-ENAGEVQRETLRRILEQNYDVEYLKKRLGDTKIQDMD--ACEMETLYTSLVPLASHADLEPYIQRIADGDTASL 100 (598)
Q Consensus 24 ~~~~~-~~~~~~Q~~~L~~iL~~n~~T~ygr~~~~~~~~~g~~--~i~~~edF~~~vPl~~Yed~~p~ieR~~~Ge~~~l 100 (598)
++.+. .+.++.|.+.|+++++...+++|+|++ |+.. |+. .+.+.+|++ ++|++++++++.... .+. .-
T Consensus 11 ~e~~~~~~~~~~q~~~L~~~l~~~~~~p~y~~~--~~~~-g~~~~~i~~~~dl~-~lP~~~~~~l~~~~p---~~~--~~ 81 (436)
T 3qov_A 11 IEIMSREKLQELQLQRLKKTINIAANSPYYKEV--FSKN-GITGDSIQSLDDIR-KIPFTTKSDMRANYP---FGL--VA 81 (436)
T ss_dssp HHTCCHHHHHHHHHHHHHHHHHHHTTSHHHHHH--HHHT-TCCTTSCSSSGGGG-GSCCBCHHHHHHTTT---TTT--CC
T ss_pred ccCCCHHHHHHHHHHHHHHHHHHHHcCHHHHHH--HHHc-CCChhhCCCHHHHH-HCCCCCHHHHHhcCC---Ccc--cc
Confidence 34433 467889999999999876999999998 6655 664 688999998 799999999975321 011 01
Q ss_pred ccc-cccceeecccccCCCcccccccChhhHHHHHHHHHHHHHHHHhcCCCCCCCceEEEeccCCccccCCCceEecccc
Q 007568 101 LTQ-EPITKLSLSSGTTEGRQKYVPFTKHSSQTTLQIFRLAAAYRSRVYPIREGGRILEFIYSSKQFKTKGGLTAGTATT 179 (598)
Q Consensus 101 l~~-~~i~~f~~TSGTT~G~~K~IP~T~~~l~~~~~~~~~~~~~~~~~~P~~~~gk~l~~~~~~~~~~t~~Gip~g~~S~ 179 (598)
..+ +.+.++..||||| |+||.++.|+..+........- ....+.+....+.+. .. |.+...+
T Consensus 82 ~~~~~~~a~i~~TSGTT-G~PK~v~~th~~~~~~~~~~~~----~~~~~~~~~~d~~~~--~~----------~~~~~~~ 144 (436)
T 3qov_A 82 GDMKRDGVRIHSSSGTT-GNPTVIVHSQHDLDSWANLVAR----CLYMVGIRKTDVFQN--SS----------GYGMFTG 144 (436)
T ss_dssp SCHHHHEEEEEECSCSS-SCCCEEEEEHHHHHHHHHHHHH----HHHHTTCCTTSEEEE--CS----------CCTTCHH
T ss_pred CCCcCCeEEEEECCCcC-CCCeEEEECHHHHHHHHHHHHH----HHHHcCCCCCCEEEE--Cc----------ccccchh
Confidence 122 4466888999999 8999999999977543322111 111123331233222 11 1100000
Q ss_pred ccccchhHhhhhhhhhcccCChhhhhccCChHHHHHHHHHhcccCCCCceEEE-ecchhHHHHHHHHHHHhHHHHHHHHH
Q 007568 180 HYYASEEFKIKQEKTKSFTCSPEEVISSGEYKQSTYCHLLLGLFFSDQVEFIT-STFAYSIVQAFTAFEECWQDICIDVR 258 (598)
Q Consensus 180 ~~~~~~~f~~~~~~~~~~~~~P~~~~~~~d~~~~~Y~~Ll~~L~~~~~l~~i~-~~f~~~l~~~~~~le~~w~el~~dI~ 258 (598)
. ....+..+..+. ..+. ..+ +-+.+++.|+
T Consensus 145 ~------------------------------~~~~~~~l~~G~------~~~~~~~~-------------~~~~~~~~i~ 175 (436)
T 3qov_A 145 G------------------------------LGFQYGAERLGC------LTVPAAAG-------------NSKRQIKFIS 175 (436)
T ss_dssp H------------------------------HHHHHHHHHHTC------EEECCCSC-------------CHHHHHHHHH
T ss_pred H------------------------------HHHHHHHHHcCC------EEEeCCCC-------------CHHHHHHHHH
Confidence 0 000111111111 0111 011 1234455555
Q ss_pred hccCCCCCCCcHHHHHhhhccCCCCHHHHHHHHHHhcccccCCccCcccccCCCCceeEEEEccC---hHHHHHHHHHHh
Q 007568 259 EGSLSSSRITLPKMRKAVLDTISPKPYLASKIEVACKKLESLDWFGLVPKLWPNAKYVYSIMTGS---MQHYLKKLRHYA 335 (598)
Q Consensus 259 ~g~~~~~~~~~~~~r~~l~~~l~~~p~~A~~L~~~~~~~~~~~~~gi~~~lwP~l~~i~~~~~g~---~~~y~~~l~~~~ 335 (598)
+..+. - +.+ -|..+..|.+.... . +. ..-+++|+. +++|| ....++++++.|
T Consensus 176 ~~~~t-~----------~~~----~P~~~~~l~~~~~~-~-----~~-~~~~~~lr~---i~~gGe~l~~~~~~~~~~~~ 230 (436)
T 3qov_A 176 DFKTT-A----------LHA----IPSYAIRLAEVFQE-E-----GI-DPRETTLKT---LVIGAEPHTDEQRRKIERML 230 (436)
T ss_dssp HHTCC-E----------EEC----CHHHHHHHHHHHHH-T-----TC-CTTSSSCCE---EEEESSCCCHHHHHHHHHHH
T ss_pred HHCCC-E----------EEE----CHHHHHHHHHHHHH-c-----CC-CcccCCccE---EEEeCCcCCHHHHHHHHHHh
Confidence 54544 1 111 24444444444332 1 11 112467884 44444 667778888888
Q ss_pred CCCCeecCcccCCCc-ceeecCCCCCCCCCcceeeecCceEEEEEecCCcccCCCCCCCCCCCCccccCCCCCCCCeEEE
Q 007568 336 GDLPLVSADYGSTES-WIGVNVDPSLPPEDVTFAVIPTFSYFEFIPIHRRKQDCNSAIDDFIEDEPVPLSQVKLGQEYEI 414 (598)
Q Consensus 336 g~~~i~~~~ygaSE~-~i~~~~~~~~~~~~~~~~l~~~~~~~EFip~~~~~~~~~~~~~~~~~~~~l~~~eve~G~~yeL 414 (598)
+++++ +.||+||+ ..++... |+. ..++++...+..+|.++++ +++. +.+|+.|||
T Consensus 231 -g~~v~-~~YG~TE~~~~~~~~~--~~~-~~g~~~~~~~~~v~i~d~~--------------~g~~-----~~~g~~Gel 286 (436)
T 3qov_A 231 -NVKAY-NSFGMTEMNGPGVAFE--CQE-QNGMHFWEDCYLVEIIDPE--------------TGEP-----VPEGEIGEL 286 (436)
T ss_dssp -TSEEE-EEEEEGGGTEEEEEEE--CTT-CSSEEECTTTEEEEEECTT--------------TCSB-----CSTTCCEEE
T ss_pred -CccEE-ecCcchhhcCCeeEEe--cCC-CCeeEEccCceEEEEEECC--------------CCCC-----CCCCCceEE
Confidence 68999 99999997 4333322 222 2456666667788888744 2333 458999999
Q ss_pred EEccc----CceeccccCCEEEEccccCC----CCEE-EEEeecCceEeeceeecCHHHHHHHHHHHHhhhhccCCeeee
Q 007568 415 VLTSF----TGLYRYRLGDVVEVAGFHKG----TPKL-NFVCRRKLILTVNIDKNTEKDLQLVVDRGSQLLNKTGAELVD 485 (598)
Q Consensus 415 VvTt~----~Gl~RYr~GDvv~v~g~~~~----~P~i-~f~gR~~~~l~~~Gekv~e~~v~~av~~~~~~l~~~g~~l~~ 485 (598)
+|++. ....||+|||+++++.-.|. .|++ .|+||.+|+++++|++|++.+|+++|.+. .++. ..
T Consensus 287 ~v~~~~~~~~~~~~y~TGDl~~~~~~gc~cG~~~~~il~i~GR~dd~ik~~G~~v~p~eiE~~l~~~------p~v~-~~ 359 (436)
T 3qov_A 287 VLTTLDREMMPLIRYRTRDLTRILPGKCPCGRTHLRIDRIKGRSDDMFIIKGVNIFPMQVEKILVQF------PELG-SN 359 (436)
T ss_dssp EEEESSCCSSCCCSEEEEEEECEECSCCTTCCCSCEECCCCCBSSSCEEETTEEECHHHHHHHHTTC------TTEE-EE
T ss_pred EEeccCcCCceEEEEEcCCEEEEcCCCCCCCCCccccCcccCccCCEEEECCEEECHHHHHHHHHhC------cCcC-Cc
Confidence 99864 23668999999999864333 3345 99999999999999999999999999753 2221 12
Q ss_pred eEEeeccCCCCceEEEEEEecCCCccc---hHHHHHHHHHhhcCCchhHhhhhcCCcCCeEEEEeccchHH
Q 007568 486 FTSHADIVNQPGHYIIYWEIKGDVEEG---VLNQCCHEMDVSFVDPGYVVSRRTNSIGPLELCIVKRGAFR 553 (598)
Q Consensus 486 f~~~~~~~~~~~~Y~~~vE~~~~~~~~---~l~~~~~~ld~~l~n~~Y~~~R~~g~l~p~~v~~v~~g~f~ 553 (598)
+.+..+........+++|+.. +...+ ..+++.+.+.+.| +.|. -.|..|.+|+.+.|.
T Consensus 360 ~vv~~~~~~~~~~l~a~v~~~-~~~~~~~~~~~~l~~~l~~~l--~~~~-------~~p~~i~~v~~~~lP 420 (436)
T 3qov_A 360 YLITLETVNNQDEMIVEVELS-DLSTDNYIELEKIRRDIIRQL--KDEI-------LVTPKVKLVKKGSLP 420 (436)
T ss_dssp EEEEEEEETTEEEEEEEEEEC-TTCCCCHHHHHHHHHHHHHHH--HHHH-------SSCCEEEEECTTCCC
T ss_pred EEEEEEcCCCCcEEEEEEEEc-CccccchhhHHHHHHHHHHHH--HHhc-------CCceEEEEeCCCccc
Confidence 333222211223556788876 42211 2344445555554 1111 246689999988766
No 5
>2y27_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: MSE PG4 ATP; 1.60A {Burkholderia cenocepacia} PDB: 2y4n_A*
Probab=99.89 E-value=5.8e-22 Score=214.34 Aligned_cols=386 Identities=15% Similarity=0.135 Sum_probs=223.3
Q ss_pred HhHHHHHHHHHHHHHHH-hcCChHhHhhhcCccCCCC--CCCcChHHHhhcCCCCCcccchHHHHHHhcCCCCCCccccc
Q 007568 29 ENAGEVQRETLRRILEQ-NYDVEYLKKRLGDTKIQDM--DACEMETLYTSLVPLASHADLEPYIQRIADGDTASLLTQEP 105 (598)
Q Consensus 29 ~~~~~~Q~~~L~~iL~~-n~~T~ygr~~~~~~~~~g~--~~i~~~edF~~~vPl~~Yed~~p~ieR~~~Ge~~~ll~~~~ 105 (598)
.+.++.|.+.|+++|+. .++++|++++ +.+. |+ ..+.+.+||+ ++|+++|++++.... .+ -.-+.++.
T Consensus 21 ~~~~~~~~~~l~~~l~~a~~~~~~y~~~--~~~~-~~~~~~i~~~~dl~-~lP~~~~~~l~~~~~---~~--~~~~~~~~ 91 (437)
T 2y27_A 21 DELTALQLERLKWSLRHAYDHSPVYRRK--FDEA-GVHPDDLKTLADLS-RFPFTTKGDLRDSYP---FG--MFAVPQDR 91 (437)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCHHHHHH--HHHH-TCCGGGCSSGGGGG-GSCCBCHHHHHHTTT---TT--TCSSCGGG
T ss_pred HHHHHHHHHHHHHHHHHHHHCCHHHHHH--HHHc-CCChhhCCCHHHHH-HCCCCCHHHHHhcCC---Cc--cccCChhH
Confidence 45778999999999996 6899999998 5554 54 4588999998 799999999874321 01 11124455
Q ss_pred cceeecccccCCCcccccccChhhHHHHHHHHHHHHHHHHhcCCCCCCCceEEEeccCCccccCCCceEeccccccccch
Q 007568 106 ITKLSLSSGTTEGRQKYVPFTKHSSQTTLQIFRLAAAYRSRVYPIREGGRILEFIYSSKQFKTKGGLTAGTATTHYYASE 185 (598)
Q Consensus 106 i~~f~~TSGTT~G~~K~IP~T~~~l~~~~~~~~~~~~~~~~~~P~~~~gk~l~~~~~~~~~~t~~Gip~g~~S~~~~~~~ 185 (598)
+.++..||||| |+||.+++|++.+.......... ...+++....+.+. .. |.+...+.
T Consensus 92 ~~~i~~TSGTT-G~PK~v~~t~~~~~~~~~~~~~~----~~~~~~~~~d~~~~--~~----------~~~~~~~~----- 149 (437)
T 2y27_A 92 ISRIHASSGTT-GKPTVVGYTAADIDTWANLVARS----IRAAGARRGDKVHV--SY----------GYGLFTGG----- 149 (437)
T ss_dssp CCEEEECCCTT-SSCCEEEECHHHHHHHHHHHHHH----HHHTTCCTTCEEEE--CS----------CCSSSHHH-----
T ss_pred eEEEEECCCCC-CCceEEecCHHHHHHHHHHHHHH----HHHcCCCCCCEEEE--cc----------cccccccc-----
Confidence 66888999999 89999999999875433221111 11233331233222 11 11100000
Q ss_pred hHhhhhhhhhcccCChhhhhccCChHHHHHHHHHhcccCCCCceEEE-ecchhHHHHHHHHHHHhHHHHHHHHHhccCCC
Q 007568 186 EFKIKQEKTKSFTCSPEEVISSGEYKQSTYCHLLLGLFFSDQVEFIT-STFAYSIVQAFTAFEECWQDICIDVREGSLSS 264 (598)
Q Consensus 186 ~f~~~~~~~~~~~~~P~~~~~~~d~~~~~Y~~Ll~~L~~~~~l~~i~-~~f~~~l~~~~~~le~~w~el~~dI~~g~~~~ 264 (598)
. ...+..++.+. .++. ..+ +.+.+++.|++..+.
T Consensus 150 ----~---------------------~~~~~~~~~G~------~~~~~~~~-------------~~~~~~~~i~~~~~t- 184 (437)
T 2y27_A 150 ----L---------------------GAHYGAERAGL------TVIPFGGG-------------QTEKQVQLIQDFRPD- 184 (437)
T ss_dssp ----H---------------------HHHHHHHHTTC------EEECCCSC-------------CHHHHHHHHHHHCCS-
T ss_pred ----h---------------------HHHHHHHHcCC------EEEeCCCC-------------CHHHHHHHHHHhCCC-
Confidence 0 00011111111 1111 010 234455556555544
Q ss_pred CCCCcHHHHHhhhccCCCCHHHHHHHHHHhcccccCCccCcccccCCCCceeEEEEccC---hHHHHHHHHHHhCCCCee
Q 007568 265 SRITLPKMRKAVLDTISPKPYLASKIEVACKKLESLDWFGLVPKLWPNAKYVYSIMTGS---MQHYLKKLRHYAGDLPLV 341 (598)
Q Consensus 265 ~~~~~~~~r~~l~~~l~~~p~~A~~L~~~~~~~~~~~~~gi~~~lwP~l~~i~~~~~g~---~~~y~~~l~~~~g~~~i~ 341 (598)
- +.+ -|..+..|.+...+ . +.-. -+++++. +++|| ....++++++.+ +++++
T Consensus 185 ~----------l~~----~Ps~~~~l~~~~~~-~-----~~~~-~~~~lr~---i~~gGe~l~~~~~~~~~~~~-g~~v~ 239 (437)
T 2y27_A 185 I----------IMV----TPSYMLSIADEIER-Q-----GLDP-VQSSLRI---GIFGAEPWTNDMRVAIEQRM-GIDAV 239 (437)
T ss_dssp E----------EEE----CHHHHHHHHHHHHH-T-----TCCG-GGSSCCE---EEEESSCCCHHHHHHHHHHH-TSEEE
T ss_pred E----------EEE----CHHHHHHHHHHHHH-c-----CCCc-ccCCeeE---EEEcCccCCHHHHHHHHHHH-CcCEE
Confidence 1 222 24444444443332 1 1111 1467884 34443 667788888888 58999
Q ss_pred cCcccCCCc-ceeecCCCCCCCCCcceeeecCceEEEEEecCCcccCCCCCCCCCCCCccccCCCCCCCCeEEEEEcccC
Q 007568 342 SADYGSTES-WIGVNVDPSLPPEDVTFAVIPTFSYFEFIPIHRRKQDCNSAIDDFIEDEPVPLSQVKLGQEYEIVLTSFT 420 (598)
Q Consensus 342 ~~~ygaSE~-~i~~~~~~~~~~~~~~~~l~~~~~~~EFip~~~~~~~~~~~~~~~~~~~~l~~~eve~G~~yeLVvTt~~ 420 (598)
+.||+||+ ..++... |+....++++..++..+|+++++. +++ +.+|+.|||+||+..
T Consensus 240 -~~YG~TE~~g~~~~~~--~~~~~~g~~~~~~~~~~~i~d~~~--------------g~~-----~~~g~~Gel~v~~~t 297 (437)
T 2y27_A 240 -DIYGLSEVMGPGVASE--CVETKDGPTIWEDHFYPEIIDPET--------------GEV-----LPDGELGELVFTSLT 297 (437)
T ss_dssp -EEEEETTTTEEEEEEC--CTTTCSSCEECTTTEEEEEECTTT--------------CCB-----CCTTCCEEEEEEESS
T ss_pred -ecCCchhhcCCeeEEe--cCCCCCceeEccCceEEEEEcCCC--------------CCC-----CCCCCccEEEEecCC
Confidence 99999995 3322211 222112466655678889887441 333 458999999998753
Q ss_pred c----eeccccCCEEEEccc-cCCCCEE-EEEeecCceEeeceeecCHHHHHHHHHHHHhhhhccCCeeeeeEEeeccCC
Q 007568 421 G----LYRYRLGDVVEVAGF-HKGTPKL-NFVCRRKLILTVNIDKNTEKDLQLVVDRGSQLLNKTGAELVDFTSHADIVN 494 (598)
Q Consensus 421 G----l~RYr~GDvv~v~g~-~~~~P~i-~f~gR~~~~l~~~Gekv~e~~v~~av~~~~~~l~~~g~~l~~f~~~~~~~~ 494 (598)
. +.||+|||+++++.. -...|+| .|+||.+|+++++|++|++.+|+++|.+.. ++. ..+.+..+...
T Consensus 298 ~~~~~~~~y~TGDl~~~~~~~G~~~~~i~~i~GR~~d~i~~~G~~v~p~eiE~~l~~~p------~V~-~~~vv~~~~~~ 370 (437)
T 2y27_A 298 KEALPIIRYRTRDLTRLLPGTARTMRRMEKITGRSDDMMIVRGVNVFPTQIEEQLLKQR------ALA-PHYQIVLTKEG 370 (437)
T ss_dssp CSSSCCCSEEEEEEECEECCSSSSSCEECCCCEEGGGCEEETTEEECHHHHHHHHTTCT------TBC-SCCEEEEEEET
T ss_pred cCCchhheeecCCEEEEeCCCCCCccccCccccccCCeEEECCeEECHHHHHHHHHhCc------CcC-ccEEEEEeecC
Confidence 3 678999999999862 2236777 899999999999999999999999997542 221 12322221111
Q ss_pred CCceEEEEEEecCCCcc--chHHHHHHHHHhhcCCchhHhhhhcCCcCCeEEEEeccchHH
Q 007568 495 QPGHYIIYWEIKGDVEE--GVLNQCCHEMDVSFVDPGYVVSRRTNSIGPLELCIVKRGAFR 553 (598)
Q Consensus 495 ~~~~Y~~~vE~~~~~~~--~~l~~~~~~ld~~l~n~~Y~~~R~~g~l~p~~v~~v~~g~f~ 553 (598)
.....+++|+...+... ...+++.+.+.+.| +.|. --|..|.+|..+.|.
T Consensus 371 ~~~~l~a~v~~~~~~~~~~~~~~~l~~~l~~~l--~~~~-------~~p~~v~~v~~~~lP 422 (437)
T 2y27_A 371 PLDVLTLNVEPCPETAPDTAAIQVAKQALAYDI--KSLI-------GVTAVINVLPVNGIE 422 (437)
T ss_dssp TEEEEEEEECBCTTTTTCHHHHHHHHHHHHHHH--HHHH-------CCCEEEEECCTTCSC
T ss_pred CCceEEEEEEECCCccchhhhHHHHHHHHHHHH--HHhc-------CCceEEEEeCCCCcc
Confidence 22455677877543211 12233444444443 1111 135678888776664
No 6
>2y4o_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: DLL; 1.90A {Burkholderia cenocepacia}
Probab=99.89 E-value=1.6e-21 Score=211.27 Aligned_cols=383 Identities=17% Similarity=0.134 Sum_probs=221.7
Q ss_pred HhHHHHHHHHHHHHHHH-hcCChHhHhhhcCccCCCC--CCCcChHHHhhcCCCCCcccchHHHHHHhcCCCCCCccccc
Q 007568 29 ENAGEVQRETLRRILEQ-NYDVEYLKKRLGDTKIQDM--DACEMETLYTSLVPLASHADLEPYIQRIADGDTASLLTQEP 105 (598)
Q Consensus 29 ~~~~~~Q~~~L~~iL~~-n~~T~ygr~~~~~~~~~g~--~~i~~~edF~~~vPl~~Yed~~p~ieR~~~Ge~~~ll~~~~ 105 (598)
.+.++.|.+.|+++|+. .++++|++++ |... |+ ..+.+.+||+ ++|+++|++++.... .+ -.-+.++.
T Consensus 23 ~~~~~~q~~~l~~~l~~a~~~~~~y~~~--~~~~-~~~~~~i~~~~dl~-~lP~~~~~~l~~~~p---~~--~~~~~~~~ 93 (443)
T 2y4o_A 23 DELQALQLERLKWSLRHAYDNVPHYRRT--FDAA-GVHPDDLKSLADLA-KFPFSTKNDLRDNYP---FG--LFAVPREQ 93 (443)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCHHHHHH--HHHH-TCCGGGCCSGGGGG-GSCCBCHHHHHTTTT---TT--TCSSCGGG
T ss_pred HHHHHHHHHHHHHHHHHHHHcCHHHHHH--HHHc-CCChhhCCCHHHHH-HCCCCcHHHHHhhCC---Cc--ccCCChhh
Confidence 45778999999999996 6899999998 5554 55 4688999998 799999999974321 01 11124455
Q ss_pred cceeecccccCCCcccccccChhhHHHHHHHHHHHHHHHHhcCCCCCCCceEEEeccCCccccCCCceEeccccccccch
Q 007568 106 ITKLSLSSGTTEGRQKYVPFTKHSSQTTLQIFRLAAAYRSRVYPIREGGRILEFIYSSKQFKTKGGLTAGTATTHYYASE 185 (598)
Q Consensus 106 i~~f~~TSGTT~G~~K~IP~T~~~l~~~~~~~~~~~~~~~~~~P~~~~gk~l~~~~~~~~~~t~~Gip~g~~S~~~~~~~ 185 (598)
+.++..||||| |+||.+++|++.+.......... ...+++....+.+. .. |.+...+..
T Consensus 94 ~~~i~~TSGTT-G~PK~v~~t~~~~~~~~~~~~~~----~~~~~~~~~d~~l~--~~----------~~~~~~~~~---- 152 (443)
T 2y4o_A 94 VVRVHASSGTT-GKPTVVGYTARDIDTWANVTARS----IRAAGGRPGDTLHN--AF----------GYGLFTGGL---- 152 (443)
T ss_dssp CCEEEEECCSS-SSCEEEEECHHHHHHHHHHHHHH----HHHTTCCTTCEEEE--CS----------CCSSSHHHH----
T ss_pred eEEEEECCCCC-CCceEEecCHHHHHHHHHHHHHH----HHHcCCCCCCEEEE--ec----------cCcccccHH----
Confidence 66888999999 89999999999875433221111 11133331233322 11 111000000
Q ss_pred hHhhhhhhhhcccCChhhhhccCChHHHHHHHHHhcccCCCCceEEE-ecchhHHHHHHHHHHHhHHHHHHHHHhccCCC
Q 007568 186 EFKIKQEKTKSFTCSPEEVISSGEYKQSTYCHLLLGLFFSDQVEFIT-STFAYSIVQAFTAFEECWQDICIDVREGSLSS 264 (598)
Q Consensus 186 ~f~~~~~~~~~~~~~P~~~~~~~d~~~~~Y~~Ll~~L~~~~~l~~i~-~~f~~~l~~~~~~le~~w~el~~dI~~g~~~~ 264 (598)
...+..++.+. .++. ..+ +.+++++.|++..+.
T Consensus 153 --------------------------~~~~~~~~~G~------~~~~~~~~-------------~~~~~~~~i~~~~~t- 186 (443)
T 2y4o_A 153 --------------------------GIHYGAERLGC------MVVPMSGG-------------QTEKQVQLIRDFEPK- 186 (443)
T ss_dssp --------------------------HHHHHHHHHTC------EEECCCSC-------------CHHHHHHHHHHHCCS-
T ss_pred --------------------------HHHHHHHHcCC------EEEECCCC-------------CHHHHHHHHHHhCCc-
Confidence 00011111111 0111 000 233445555554544
Q ss_pred CCCCcHHHHHhhhccCCCCHHHHHHHHHHhcccccCCccCcccccCCCCceeEEEEccC---hHHHHHHHHHHhCCCCee
Q 007568 265 SRITLPKMRKAVLDTISPKPYLASKIEVACKKLESLDWFGLVPKLWPNAKYVYSIMTGS---MQHYLKKLRHYAGDLPLV 341 (598)
Q Consensus 265 ~~~~~~~~r~~l~~~l~~~p~~A~~L~~~~~~~~~~~~~gi~~~lwP~l~~i~~~~~g~---~~~y~~~l~~~~g~~~i~ 341 (598)
- +.+ -|..+..|.+...+ . +.-. -+++++. +++|| ....++++++.+ +++++
T Consensus 187 ~----------l~~----~Ps~~~~l~~~~~~-~-----~~~~-~~~~lr~---i~~gGe~l~~~~~~~~~~~~-g~~v~ 241 (443)
T 2y4o_A 187 I----------ILV----TPSYMLNLIDEMVR-Q-----GMDP-AESSLKI---GIFGAEPWTQALRNEVETRV-GIDAL 241 (443)
T ss_dssp E----------EEE----CHHHHHHHHHHHHH-T-----TCCG-GGSSCCE---EEEESSCCCHHHHHHHHHHH-TCEEE
T ss_pred E----------EEE----CHHHHHHHHHHHHH-c-----CCCc-ccCCceE---EEECCCcCCHHHHHHHHHHh-CcCEE
Confidence 1 222 24444444443332 1 1111 2467884 34444 667788888888 68999
Q ss_pred cCcccCCCc-c--eeecCCCCCCCCCcceeeecCceEEEEEecCCcccCCCCCCCCCCCCccccCCCCCCCCeEEEEEcc
Q 007568 342 SADYGSTES-W--IGVNVDPSLPPEDVTFAVIPTFSYFEFIPIHRRKQDCNSAIDDFIEDEPVPLSQVKLGQEYEIVLTS 418 (598)
Q Consensus 342 ~~~ygaSE~-~--i~~~~~~~~~~~~~~~~l~~~~~~~EFip~~~~~~~~~~~~~~~~~~~~l~~~eve~G~~yeLVvTt 418 (598)
+.||+||+ . ++.. |+....++++..++..+|+++++ ++++ +.+|+.|||+||+
T Consensus 242 -~~YG~TE~~g~~~~~~----~~~~~~g~~~~~~~~~~~i~d~~--------------~g~~-----~~~G~~Gel~v~~ 297 (443)
T 2y4o_A 242 -DIYGLSEVMGPGVACE----CVETKDGPVIWEDHFYPEIIDPV--------------TGEV-----LPDGSQGELVFTS 297 (443)
T ss_dssp -EEEEETTTTEEEEEEE----CTTTCCSEEECTTTEEEEEECTT--------------TCCB-----CCTTCCEEEEEEE
T ss_pred -eccCchhhcCCeEEec----cCCCCCceEEccCCeEEEEEcCC--------------CCCC-----CCCCCceEEEEeC
Confidence 99999995 3 3333 22211256665567788888744 1333 4589999999987
Q ss_pred cCc----eeccccCCEEEEcccc-C-CCCEE-EEEeecCceEeeceeecCHHHHHHHHHHHHhhhhccCCeeeeeEEeec
Q 007568 419 FTG----LYRYRLGDVVEVAGFH-K-GTPKL-NFVCRRKLILTVNIDKNTEKDLQLVVDRGSQLLNKTGAELVDFTSHAD 491 (598)
Q Consensus 419 ~~G----l~RYr~GDvv~v~g~~-~-~~P~i-~f~gR~~~~l~~~Gekv~e~~v~~av~~~~~~l~~~g~~l~~f~~~~~ 491 (598)
... +.||+|||+++++. . + ..|+| .|+||.+|+++++|++|++.+|+++|.+. .++. ..+.+..+
T Consensus 298 ~t~~~~p~~~y~TGDl~~~~~-~cG~~~~~l~~i~GR~~d~i~~~G~~v~p~eiE~~l~~~------p~V~-~~~vv~~~ 369 (443)
T 2y4o_A 298 LTKEAMPVIRYRTRDLTALLP-PTARAMRRLAKITGRSDDMLIVRGVNVFPSQIEEIVVAL------PLLS-GQFQITLS 369 (443)
T ss_dssp SSCSSSCCSSEEEEEEECEEC-CSSSSSCEECCCCEESSCCEEETTEEECHHHHHHHHHTS------TTEE-EEEEEEEE
T ss_pred CCcccChhheeecCCEEEEcC-CCCCCccccCccccccCCeEEECCEEECHHHHHHHHHhC------cCcC-ccEEEEEe
Confidence 532 56899999999986 2 1 23566 89999999999999999999999999753 2321 12333222
Q ss_pred cCCCCceEEEEEEecC--CC--ccchHHHHHHHHHhhcCCchhHhhhhcCCcCCeEEEEeccchHH
Q 007568 492 IVNQPGHYIIYWEIKG--DV--EEGVLNQCCHEMDVSFVDPGYVVSRRTNSIGPLELCIVKRGAFR 553 (598)
Q Consensus 492 ~~~~~~~Y~~~vE~~~--~~--~~~~l~~~~~~ld~~l~n~~Y~~~R~~g~l~p~~v~~v~~g~f~ 553 (598)
.......-+++|+... +. +....+++.+.+.+.| +.| .--|.+|.+|..+.|.
T Consensus 370 ~~~~~~~~~a~v~~~~~~~~~~~~~~~~~l~~~l~~~l--~~~-------~~~p~~v~~v~~~~lP 426 (443)
T 2y4o_A 370 RDGHMDRLDLAVELRSEAAASVTDGERAALARELQHRI--KTM-------VGVSSGVTVLAAGGIP 426 (443)
T ss_dssp EETTEEEEEEEEEECHHHHTTCCHHHHHHHHHHHHHHH--HHH-------TCCCCEEEEECTTCSC
T ss_pred cCCCCceEEEEEEECCcccccchhhHHHHHHHHHHHHH--HHH-------hCCceEEEEeCCCccc
Confidence 1111234557787643 11 1112333444444443 111 1135578888877765
No 7
>3hgu_A EHPF; phenazine, antibiotic, biosynthetic protein; 1.95A {Pantoea agglomerans} PDB: 3hgv_A 3l2k_A*
Probab=99.63 E-value=2.1e-15 Score=159.14 Aligned_cols=90 Identities=13% Similarity=0.114 Sum_probs=66.6
Q ss_pred HHHHHHHHHHHHH-hc---CChHhHhhhcCccCCCCC---CCcChHHHhhcCCCCCcccchH-HHHHHhcCCCCCCcccc
Q 007568 33 EVQRETLRRILEQ-NY---DVEYLKKRLGDTKIQDMD---ACEMETLYTSLVPLASHADLEP-YIQRIADGDTASLLTQE 104 (598)
Q Consensus 33 ~~Q~~~L~~iL~~-n~---~T~ygr~~~~~~~~~g~~---~i~~~edF~~~vPl~~Yed~~p-~ieR~~~Ge~~~ll~~~ 104 (598)
..+++.|+++++. .+ +++|+|++ +.++ |++ .|++.+|++ ++|+++ ++++. +.+.+.. .. +.++
T Consensus 21 ~~~~~~l~~~~~~~~~~~~~~p~Yr~~--~~~~-g~~p~~~i~~~~dl~-~lP~~~-~~l~~~~~~~~~p---~~-~~~~ 91 (369)
T 3hgu_A 21 NDTNNFVQALMRWHFSKETGSPFWLGM--REQL-NFDPIKDVKTINDLR-QFSDIS-HCLRQEPVANLVP---QG-LPAD 91 (369)
T ss_dssp TCHHHHHHHHHHHHHSTTTSCHHHHHH--GGGS-SSCHHHHCCSTGGGG-GSCCCG-GGGTTSCGGGGSC---TT-SCTT
T ss_pred cCHHHHHHHHHHHHcCCCCCCHHHHHH--HHhc-CCChhHhCCCHHHHh-hCCCch-hhhhcCCHHHcCC---cc-CCcc
Confidence 3578889999986 56 89999999 7777 774 688999997 699999 99875 3333221 01 2455
Q ss_pred ccceeecccccCCCcccccccChhhHHH
Q 007568 105 PITKLSLSSGTTEGRQKYVPFTKHSSQT 132 (598)
Q Consensus 105 ~i~~f~~TSGTT~G~~K~IP~T~~~l~~ 132 (598)
.+.+...||||| |+||-+.+|++.+..
T Consensus 92 ~~a~i~~TSGTT-G~PKgv~~t~~~~~~ 118 (369)
T 3hgu_A 92 SHPQVYESGGTT-GAPKYVVAYDAWIEA 118 (369)
T ss_dssp CCCEEEEECC----CCEEEEECHHHHHH
T ss_pred ccEEEEECCCCC-CCCCEEEECHHHHHH
Confidence 667889999999 899999999987644
No 8
>3etc_A AMP-binding protein; adenylate-forming acyl-COA synthetase ligase, ligase; HET: PGE 1PE EPE; 2.10A {Methanosarcina acetivorans}
Probab=99.58 E-value=1.2e-13 Score=155.16 Aligned_cols=133 Identities=18% Similarity=0.265 Sum_probs=93.5
Q ss_pred cCCCCceeEEEEccC---hHHHHHHHHHHhCCCCeecCcccCCCcceeecCCCC--CCCCCcceeeecCceEEEEEecCC
Q 007568 309 LWPNAKYVYSIMTGS---MQHYLKKLRHYAGDLPLVSADYGSTESWIGVNVDPS--LPPEDVTFAVIPTFSYFEFIPIHR 383 (598)
Q Consensus 309 lwP~l~~i~~~~~g~---~~~y~~~l~~~~g~~~i~~~~ygaSE~~i~~~~~~~--~~~~~~~~~l~~~~~~~EFip~~~ 383 (598)
-+++|+. +++|| ....++++++.+ +++++ +.||+||+.+.+...+. ..++..+. ..|+ .-++.++.+
T Consensus 339 ~l~~lr~---i~~gGe~l~~~~~~~~~~~~-g~~i~-~~YG~TE~~~~~~~~~~~~~~~~~~G~-p~~~-~~v~ivd~~- 410 (580)
T 3etc_A 339 NFSTLKY---AVVAGEPLNPEVFNRFLEFT-GIKLM-EGFGQTETVVTIATFPWMEPKPGSIGK-PTPG-YKIELMDRD- 410 (580)
T ss_dssp CCTTCCE---EEECSSCCCHHHHHHHHHHH-SCCCE-EEECCTTSSCCEECCTTSCCCTTCCBE-ECTT-CEEEEECTT-
T ss_pred CCccceE---EEEccCCCCHHHHHHHHHHh-CCeEe-cccccccccceeecCCCCCCCCCcccc-CCCC-CEEEEECCC-
Confidence 3567884 44444 556667787777 58999 99999998543332221 11222222 2233 344555422
Q ss_pred cccCCCCCCCCCCCCccccCCCCCCCCeEEEEEccc--------Cceec-------------cccCCEEEEccccCCCCE
Q 007568 384 RKQDCNSAIDDFIEDEPVPLSQVKLGQEYEIVLTSF--------TGLYR-------------YRLGDVVEVAGFHKGTPK 442 (598)
Q Consensus 384 ~~~~~~~~~~~~~~~~~l~~~eve~G~~yeLVvTt~--------~Gl~R-------------Yr~GDvv~v~g~~~~~P~ 442 (598)
++. +.+|+.|||+|++. .|+|+ |+|||+++++. ...
T Consensus 411 --------------g~~-----~~~g~~GEl~v~~~~g~~~~~~~gY~~~p~~t~~~f~~gwy~TGDlg~~d~----dG~ 467 (580)
T 3etc_A 411 --------------GRL-----CEVGEEGEIVINTMEGKPVGLFVHYGKDPERTEETWHDGYYHTGDMAWMDE----DGY 467 (580)
T ss_dssp --------------SCB-----CCTTCCEEEEEECTTCCCTTCCCEETTCHHHHHHHEETTEEEEEEEEEECT----TSC
T ss_pred --------------CCC-----CCCCCceEEEEecCCCCCCeeeccccCCHhHHHhhcCCCEEecCcEEEECC----CCc
Confidence 333 56899999999752 45654 99999999975 678
Q ss_pred EEEEeecCceEeeceeecCHHHHHHHHHHH
Q 007568 443 LNFVCRRKLILTVNIDKNTEKDLQLVVDRG 472 (598)
Q Consensus 443 i~f~gR~~~~l~~~Gekv~e~~v~~av~~~ 472 (598)
+.|+||.||+++++|++|++.+||++|.+.
T Consensus 468 l~~~GR~dd~Ik~~G~~I~p~eIE~~l~~~ 497 (580)
T 3etc_A 468 LWFVGRADDIIKTSGYKVGPFEVESALIQH 497 (580)
T ss_dssp EEEEEESSSCEEETTEEECHHHHHHHHTTS
T ss_pred EEEEecCCCEEEECCEEECHHHHHHHHHhC
Confidence 999999999999999999999999999753
No 9
>2d1s_A Luciferase, luciferin 4-monooxygenase; alpha/beta, beta barrel, alpha+beta, riken structural genomics/proteomics initiative, RSGI; HET: SLU; 1.30A {Luciola cruciata} PDB: 2d1q_A* 2d1r_A* 2d1t_A*
Probab=99.57 E-value=1.6e-13 Score=152.86 Aligned_cols=135 Identities=16% Similarity=0.135 Sum_probs=94.6
Q ss_pred cCCCCceeEEEEccC---hHHHHHHHHHHhCCCCeecCcccCCCcceeecCCCCC--CCCCcceeeecCceEEEEEecCC
Q 007568 309 LWPNAKYVYSIMTGS---MQHYLKKLRHYAGDLPLVSADYGSTESWIGVNVDPSL--PPEDVTFAVIPTFSYFEFIPIHR 383 (598)
Q Consensus 309 lwP~l~~i~~~~~g~---~~~y~~~l~~~~g~~~i~~~~ygaSE~~i~~~~~~~~--~~~~~~~~l~~~~~~~EFip~~~ 383 (598)
-+++|+. +.+|| ....++++++.+|+++++ +.||+||+...+...+.. ..+..+. ..|+ .-.+.++++
T Consensus 307 ~l~~lr~---i~~gG~~l~~~~~~~~~~~~~~~~i~-~~YG~TE~~~~~~~~~~~~~~~~~~G~-~~~~-~~~~i~d~~- 379 (548)
T 2d1s_A 307 DLSNLVE---IASGGAPLSKEVGEAVARRFNLPGVR-QGYGLTETTSAIIITPEGDDKPGASGK-VVPL-FKAKVIDLD- 379 (548)
T ss_dssp CCTTCCE---EEECSSCCCHHHHHHHHHHTTCSCCE-EEEECGGGSSEEEECCTTCCCTTCCBE-ECTT-CEEEEECTT-
T ss_pred cccceeE---EEEcCccCCHHHHHHHHHHcCCCcee-eccccccccceeeecCcccCCCCCCCc-cCCC-ceEEEEeCC-
Confidence 3567884 44444 566777888888888899 999999975432222211 1111222 2233 344555532
Q ss_pred cccCCCCCCCCCCCCccccCCCCCCCCeEEEEEcc---cCcee--------------ccccCCEEEEccccCCCCEEEEE
Q 007568 384 RKQDCNSAIDDFIEDEPVPLSQVKLGQEYEIVLTS---FTGLY--------------RYRLGDVVEVAGFHKGTPKLNFV 446 (598)
Q Consensus 384 ~~~~~~~~~~~~~~~~~l~~~eve~G~~yeLVvTt---~~Gl~--------------RYr~GDvv~v~g~~~~~P~i~f~ 446 (598)
+++. +.+|+.|||+|+. ..|+| .|+|||+++++. ...+.|+
T Consensus 380 -------------~~~~-----~~~g~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~g~~~TGDl~~~~~----dG~l~~~ 437 (548)
T 2d1s_A 380 -------------TKKS-----LGPNRRGEVCVKGPMLMKGYVNNPEATKELIDEEGWLHTGDIGYYDE----EKHFFIV 437 (548)
T ss_dssp -------------TCCB-----CCTTCCEEEEEESTTSCSEETTCHHHHHHHBCTTSCEEEEEEEEECT----TCCEEEE
T ss_pred -------------cCcc-----CCCCCCeEEEECCHHHhhhhcCChHHhhhcccCCcEEEccCEEEEcC----CCeEEEe
Confidence 1333 4589999999976 35665 399999999985 6789999
Q ss_pred eecCceEeeceeecCHHHHHHHHHHH
Q 007568 447 CRRKLILTVNIDKNTEKDLQLVVDRG 472 (598)
Q Consensus 447 gR~~~~l~~~Gekv~e~~v~~av~~~ 472 (598)
||.+|+++++|++|++.+||++|.+.
T Consensus 438 GR~~d~ik~~G~~v~p~eIE~~l~~~ 463 (548)
T 2d1s_A 438 DRLKSLIKYKGYQVPPAELESVLLQH 463 (548)
T ss_dssp EEGGGCBCBTTCCBCHHHHHHHHHTS
T ss_pred ccccceEEECCEEECHHHHHHHHHhC
Confidence 99999999999999999999999853
No 10
>4fuq_A Malonyl COA synthetase; ANL superfamily, methylma malonate, ligase; HET: MSE; 1.70A {Rhodopseudomonas palustris} PDB: 4fut_A* 4gxr_A* 4gxq_A*
Probab=99.56 E-value=3.5e-13 Score=148.36 Aligned_cols=135 Identities=15% Similarity=0.188 Sum_probs=93.3
Q ss_pred ccCCCCceeEEEEccC---hHHHHHHHHHHhCCCCeecCcccCCCcceeecCCCC--CCCCCcceeeecCceEEEEEecC
Q 007568 308 KLWPNAKYVYSIMTGS---MQHYLKKLRHYAGDLPLVSADYGSTESWIGVNVDPS--LPPEDVTFAVIPTFSYFEFIPIH 382 (598)
Q Consensus 308 ~lwP~l~~i~~~~~g~---~~~y~~~l~~~~g~~~i~~~~ygaSE~~i~~~~~~~--~~~~~~~~~l~~~~~~~EFip~~ 382 (598)
...+++++ +.+|| .....+++++.+ +++++ +.||+||+.+....... ..++..+. ..|+ .-.+.++++
T Consensus 265 ~~~~~lr~---~~~gg~~l~~~~~~~~~~~~-~~~~~-~~YG~TE~~~~~~~~~~~~~~~~~~G~-p~~~-~~~~i~d~~ 337 (503)
T 4fuq_A 265 ETTGHMRL---FISGSAPLLADTHREWSAKT-GHAVL-ERYGMTETNMNTSNPYDGDRVPGAVGP-ALPG-VSARVTDPE 337 (503)
T ss_dssp TTTTTCCE---EEECSSCCCHHHHHHHHHHH-SCCEE-ECCEETTTEECBCCCSSSCCCTTEEEE-BCTT-CEEEEECTT
T ss_pred cchhhcEE---EEECCCCCCHHHHHHHHHHh-CCCcc-ceEcccccCcccccCCCCCCcCCcccc-CCCC-eEEEEEECC
Confidence 34567884 45554 556667777777 47899 99999998554321111 11111111 2223 334455422
Q ss_pred CcccCCCCCCCCCCCCccccCCCCCCCCeEEEEEcc---cCceec--------------cccCCEEEEccccCCCCEEEE
Q 007568 383 RRKQDCNSAIDDFIEDEPVPLSQVKLGQEYEIVLTS---FTGLYR--------------YRLGDVVEVAGFHKGTPKLNF 445 (598)
Q Consensus 383 ~~~~~~~~~~~~~~~~~~l~~~eve~G~~yeLVvTt---~~Gl~R--------------Yr~GDvv~v~g~~~~~P~i~f 445 (598)
+++. +.+|+.|||+|+. ..|+|. |+|||+++++. ...+.|
T Consensus 338 --------------~g~~-----~~~g~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~g~~~TGDl~~~~~----dG~l~~ 394 (503)
T 4fuq_A 338 --------------TGKE-----LPRGDIGMIEVKGPNVFKGYWRMPEKTKSEFRDDGFFITGDLGKIDE----RGYVHI 394 (503)
T ss_dssp --------------TCCB-----CCTTCCEEEEEESTTSCCCBTTCHHHHHHTBCTTSCEEEEEEEEECT----TCEEEE
T ss_pred --------------CCCC-----CcCCCceEEEEECCchhhhhcCChhhhHhhhCCCCCeEcceeEEEcC----CCcEEE
Confidence 2333 5689999999965 467774 99999999985 789999
Q ss_pred EeecCceEeeceeecCHHHHHHHHHHH
Q 007568 446 VCRRKLILTVNIDKNTEKDLQLVVDRG 472 (598)
Q Consensus 446 ~gR~~~~l~~~Gekv~e~~v~~av~~~ 472 (598)
+||.||+++++|++|++.+||++|.+.
T Consensus 395 ~GR~dd~ik~~G~~v~p~eIE~~l~~~ 421 (503)
T 4fuq_A 395 LGRGKDLVITGGFNVYPKEIESEIDAM 421 (503)
T ss_dssp CCSSTTCEEETTEEECHHHHHHHHHTS
T ss_pred EecCCCEEEECCEEECHHHHHHHHHhC
Confidence 999999999999999999999999753
No 11
>3ni2_A 4-coumarate:COA ligase; 4CL, phenylpropanoid biosynthesis; HET: AYL EPE; 1.90A {Populus tomentosa} PDB: 3a9v_A* 3a9u_A*
Probab=99.55 E-value=1e-13 Score=153.78 Aligned_cols=135 Identities=16% Similarity=0.186 Sum_probs=94.5
Q ss_pred cCCCCceeEEEEccC---hHHHHHHHHHHhCCCCeecCcccCCCccee--ecC----CC-CCCCCCcceeeecCceEEEE
Q 007568 309 LWPNAKYVYSIMTGS---MQHYLKKLRHYAGDLPLVSADYGSTESWIG--VNV----DP-SLPPEDVTFAVIPTFSYFEF 378 (598)
Q Consensus 309 lwP~l~~i~~~~~g~---~~~y~~~l~~~~g~~~i~~~~ygaSE~~i~--~~~----~~-~~~~~~~~~~l~~~~~~~EF 378 (598)
-+++|++ +.+|| .....+++++.+++++++ +.||+||+... .+. .+ ...++..+. ..++ .-++.
T Consensus 295 ~l~~lr~---i~~gGe~l~~~~~~~~~~~~~~~~l~-~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~G~-~~~~-~~~~i 368 (536)
T 3ni2_A 295 DLSSLRM---IKSGGAPLGKELEDTVRAKFPQARLG-QGYGMTEAGPVLAMCLAFAKEPFDIKPGACGT-VVRN-AEMKI 368 (536)
T ss_dssp CCTTCCE---EEEESSCCCHHHHHHHHHHCTTSEEE-EEEECGGGSSEEEECGGGSSSCCCCCTTCCCE-ECSS-CEEEE
T ss_pred CCccceE---EEECCCCCCHHHHHHHHHHCCCCCcc-ccccccccchhhhcccccCCccccCCCCCeeE-eCCC-cEEEE
Confidence 4578884 44444 566777888888889999 99999997532 211 01 111111222 2223 34455
Q ss_pred EecCCcccCCCCCCCCCCCCccccCCCCCCCCeEEEEEcc---cCceec--------------cccCCEEEEccccCCCC
Q 007568 379 IPIHRRKQDCNSAIDDFIEDEPVPLSQVKLGQEYEIVLTS---FTGLYR--------------YRLGDVVEVAGFHKGTP 441 (598)
Q Consensus 379 ip~~~~~~~~~~~~~~~~~~~~l~~~eve~G~~yeLVvTt---~~Gl~R--------------Yr~GDvv~v~g~~~~~P 441 (598)
++++ ++.. +.+|+.|||+|+. ..|+|. |+|||+++++. ..
T Consensus 369 ~d~~--------------~~~~-----~~~g~~GEl~v~g~~v~~GY~~~p~~t~~~~~~~g~~~TGDl~~~~~----dG 425 (536)
T 3ni2_A 369 VDPE--------------TGAS-----LPRNQPGEICIRGDQIMKGYLNDPEATSRTIDKEGWLHTGDIGYIDD----DD 425 (536)
T ss_dssp ECTT--------------TCCB-----CCTTCCEEEEEESTTSCSEETTCHHHHHHHBCTTSCEEEEEEEEECT----TS
T ss_pred EeCC--------------CCcC-----CCCCCccEEEEeCcccchhhcCChhHHHhhccCCCceEcccEEEEcC----Cc
Confidence 5533 2333 4589999999965 467763 99999999985 67
Q ss_pred EEEEEeecCceEeeceeecCHHHHHHHHHHH
Q 007568 442 KLNFVCRRKLILTVNIDKNTEKDLQLVVDRG 472 (598)
Q Consensus 442 ~i~f~gR~~~~l~~~Gekv~e~~v~~av~~~ 472 (598)
.+.|+||.||+++++|++|++.+||+++.+.
T Consensus 426 ~l~~~GR~dd~ik~~G~~v~p~eIE~~l~~~ 456 (536)
T 3ni2_A 426 ELFIVDRLKELIKYKGFQVAPAELEALLIAH 456 (536)
T ss_dssp CEEEEEECSCCEEETTEEECHHHHHHHHHTS
T ss_pred eEEEEecccceEEECCEEECHHHHHHHHHhC
Confidence 8999999999999999999999999998753
No 12
>3fce_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, AMP-forming domain, adenylation, D-alanine protein ligase, ATP complex; HET: ATP; 1.90A {Bacillus cereus} PDB: 3fcc_A* 3dhv_A*
Probab=99.54 E-value=1.7e-13 Score=150.85 Aligned_cols=135 Identities=18% Similarity=0.230 Sum_probs=91.9
Q ss_pred ccCCCCceeEEEEccC--hHHHHHHHHHHhCCCCeecCcccCCCcceeec---CCCC----CCCCCcceeeecCceEEEE
Q 007568 308 KLWPNAKYVYSIMTGS--MQHYLKKLRHYAGDLPLVSADYGSTESWIGVN---VDPS----LPPEDVTFAVIPTFSYFEF 378 (598)
Q Consensus 308 ~lwP~l~~i~~~~~g~--~~~y~~~l~~~~g~~~i~~~~ygaSE~~i~~~---~~~~----~~~~~~~~~l~~~~~~~EF 378 (598)
...|+|+.+ +.+|. .....+++.+.+++++++ +.||+||+.+.+. ..+. ......+. ..++ .-...
T Consensus 258 ~~~~~lr~~--~~~G~~l~~~~~~~~~~~~~~~~i~-~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~G~-~~~~-~~~~i 332 (512)
T 3fce_A 258 SMLPNMKTF--LFCGEVLPNEVARKLIERFPKATIM-NTYGPTEATVAVTGIHVTEEVLDQYKSLPVGY-CKSD-CRLLI 332 (512)
T ss_dssp TTSTTCCEE--EECSSCCCHHHHHHHHHHCTTCEEE-EEECCGGGSSCSEEEECCHHHHHHCSSCCCEE-ECTT-CEEEE
T ss_pred hhCccccEE--EEecCcCCHHHHHHHHHHCCCCEEE-eCcccChhhhheeeEEeccccccccCCCcccc-ccCC-cEEEE
Confidence 346788843 23333 566777888888889999 9999999743221 1100 00111122 2222 23334
Q ss_pred EecCCcccCCCCCCCCCCCCccccCCCCCCCCeEEEEEcc---cCceec-----------------cccCCEEEEccccC
Q 007568 379 IPIHRRKQDCNSAIDDFIEDEPVPLSQVKLGQEYEIVLTS---FTGLYR-----------------YRLGDVVEVAGFHK 438 (598)
Q Consensus 379 ip~~~~~~~~~~~~~~~~~~~~l~~~eve~G~~yeLVvTt---~~Gl~R-----------------Yr~GDvv~v~g~~~ 438 (598)
++. ++.. +.+|+.|||+|+. ..|+|. |+|||++++ .
T Consensus 333 ~d~---------------~g~~-----~~~g~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~~~~~~~~TGDlg~~-~--- 388 (512)
T 3fce_A 333 MKE---------------DGTI-----APDGEKGEIVIVGPSVSVGYLGSPELTEKAFTMIDGERAYKTGDAGYV-E--- 388 (512)
T ss_dssp ECS---------------SSCB-----CCTTSCEEEEEESTTSCSCBTTCHHHHHHHEEEETTEEEEEEEEEEEE-E---
T ss_pred ECC---------------CCCC-----CCCCCeEEEEEeccccChhhcCCchhhhhccccCCCCEEEeCCceEEe-c---
Confidence 431 2333 4589999999964 467762 999999988 3
Q ss_pred CCCEEEEEeecCceEeeceeecCHHHHHHHHHHH
Q 007568 439 GTPKLNFVCRRKLILTVNIDKNTEKDLQLVVDRG 472 (598)
Q Consensus 439 ~~P~i~f~gR~~~~l~~~Gekv~e~~v~~av~~~ 472 (598)
...+.|+||.||+++++|++|++.+||++|.+.
T Consensus 389 -dG~l~i~GR~~d~ik~~G~~v~p~eIE~~l~~~ 421 (512)
T 3fce_A 389 -NGLLFYNGRLDFQIKLHGYRMELEEIEHHLRAC 421 (512)
T ss_dssp -TTEEEEEEEGGGCEEETTEEECHHHHHHHHHHS
T ss_pred -CCEEEEecccCCEEEECCEEECHHHHHHHHHhC
Confidence 578999999999999999999999999999864
No 13
>3e7w_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, non-ribosomal peptide synthetase, NRPS, adenylation domain, D-alanylation; HET: AMP; 2.28A {Bacillus subtilis} PDB: 3e7x_A*
Probab=99.53 E-value=4.5e-13 Score=147.57 Aligned_cols=136 Identities=19% Similarity=0.259 Sum_probs=92.7
Q ss_pred cccCCCCceeEEEEccC--hHHHHHHHHHHhCCCCeecCcccCCCccee-ecC--CC----CCCCCCcceeeecCceEEE
Q 007568 307 PKLWPNAKYVYSIMTGS--MQHYLKKLRHYAGDLPLVSADYGSTESWIG-VNV--DP----SLPPEDVTFAVIPTFSYFE 377 (598)
Q Consensus 307 ~~lwP~l~~i~~~~~g~--~~~y~~~l~~~~g~~~i~~~~ygaSE~~i~-~~~--~~----~~~~~~~~~~l~~~~~~~E 377 (598)
....++++.+ +.+|. .....+++++.+++++++ +.||+||+.+. ... .. .......+. ..|+ .-++
T Consensus 256 ~~~~~~l~~~--~~~G~~l~~~~~~~~~~~~~~~~i~-~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~G~-~~~~-~~~~ 330 (511)
T 3e7w_A 256 QDLLPHADTF--MFCGEVLPVSVAKALLERFPKAKIF-NTYGPTEATVAVTSVEITNDVISRSESLPVGF-AKPD-MNIF 330 (511)
T ss_dssp TTTCTTCCEE--EECSSCCCHHHHHHHHHHCTTCEEE-ECCCCGGGSSCSEEEEECHHHHTTCSSCCCBE-ECTT-CEEE
T ss_pred cccCCcccEE--EEecCCCCHHHHHHHHHHCCCcEEE-eCcccchheeeeeEEeccccccccCCcCCCcc-eeCC-CEEE
Confidence 3456788843 23343 566777888889889999 99999997432 211 10 111111222 2233 3334
Q ss_pred EEecCCcccCCCCCCCCCCCCccccCCCCCCCCeEEEEEcc---cCcee-----------------ccccCCEEEEcccc
Q 007568 378 FIPIHRRKQDCNSAIDDFIEDEPVPLSQVKLGQEYEIVLTS---FTGLY-----------------RYRLGDVVEVAGFH 437 (598)
Q Consensus 378 Fip~~~~~~~~~~~~~~~~~~~~l~~~eve~G~~yeLVvTt---~~Gl~-----------------RYr~GDvv~v~g~~ 437 (598)
.++.+ ++. +.+|+.|||+|+. ..|+| .|+|||++++.
T Consensus 331 i~d~~---------------g~~-----~~~g~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~~g~~~~~TGDlg~~~--- 387 (511)
T 3e7w_A 331 IMDEE---------------GQP-----LPEGEKGEIVIAGPSVSRGYLGEPELTEKAFFSHEGQWAYRTGDAGFIQ--- 387 (511)
T ss_dssp EECTT---------------SCB-----CCTTCCEEEEEESTTSCCCBTTCHHHHHHHEEESSSSEEEEEEEEEEEE---
T ss_pred EECCC---------------CCC-----CCCCCceEEEEecCccChhhCCCcccchhhhcCCCCCEEEeCCCeEEcc---
Confidence 44422 333 5689999999964 34554 59999999883
Q ss_pred CCCCEEEEEeecCceEeeceeecCHHHHHHHHHHH
Q 007568 438 KGTPKLNFVCRRKLILTVNIDKNTEKDLQLVVDRG 472 (598)
Q Consensus 438 ~~~P~i~f~gR~~~~l~~~Gekv~e~~v~~av~~~ 472 (598)
...+.|+||.||+++++|++|++.+||++|.+.
T Consensus 388 --dG~l~~~GR~~d~ik~~G~~v~p~eIE~~l~~~ 420 (511)
T 3e7w_A 388 --DGQIFCQGRLDFQIKLHGYRMELEEIEFHVRQS 420 (511)
T ss_dssp --TTEEEEEEESSSEEEETTEEEEHHHHHHHHHHS
T ss_pred --CCeEEEEccccCEEEECCEEeCHHHHHHHHHhC
Confidence 578999999999999999999999999999864
No 14
>3nyq_A Malonyl-COA ligase; A/B topology ababa sandwich beta-barrel adenylate-forming EN fold; HET: MCA AMP; 1.43A {Streptomyces coelicolor} PDB: 3nyr_A*
Probab=99.52 E-value=5.2e-13 Score=147.13 Aligned_cols=179 Identities=13% Similarity=0.184 Sum_probs=106.6
Q ss_pred CCCceeEEEEccC---hHHHHHHHHHHhCCCCeecCcccCCCcceeecCCCCC--CCCCcceeeecCceEEEEEecCCcc
Q 007568 311 PNAKYVYSIMTGS---MQHYLKKLRHYAGDLPLVSADYGSTESWIGVNVDPSL--PPEDVTFAVIPTFSYFEFIPIHRRK 385 (598)
Q Consensus 311 P~l~~i~~~~~g~---~~~y~~~l~~~~g~~~i~~~~ygaSE~~i~~~~~~~~--~~~~~~~~l~~~~~~~EFip~~~~~ 385 (598)
+++++ +.+|| .....+++++.+ +++++ +.||+||+.+.....+.. .+...+. ..++ .-++.++.+
T Consensus 272 ~~lr~---i~~gg~~l~~~~~~~~~~~~-~~~~~-~~YG~TE~~~~~~~~~~~~~~~~~vG~-p~~~-~~~~i~d~~--- 341 (505)
T 3nyq_A 272 AGARL---LVSGSAALPVHDHERIAAAT-GRRVI-ERYGMTETLMNTSVRADGEPRAGTVGV-PLPG-VELRLVEED--- 341 (505)
T ss_dssp HHCSE---EEECSSCCCHHHHHHHHHHH-SCCCE-EEEEETTTEEEEECCTTSCCCTTCCCE-ECTT-CEEEEC------
T ss_pred ccceE---EEECCCCCCHHHHHHHHHhc-CCeee-cccchhhcccccccCCCCCCCCCCccc-CCCC-CEEEEECCC---
Confidence 34663 44444 456667777777 58999 999999986544322221 1111222 2233 334444422
Q ss_pred cCCCCCCCCCCCCccccCCCCCCCCeEEEEEcc---cCceec--------------cccCCEEEEccccCCCCEEEEEee
Q 007568 386 QDCNSAIDDFIEDEPVPLSQVKLGQEYEIVLTS---FTGLYR--------------YRLGDVVEVAGFHKGTPKLNFVCR 448 (598)
Q Consensus 386 ~~~~~~~~~~~~~~~l~~~eve~G~~yeLVvTt---~~Gl~R--------------Yr~GDvv~v~g~~~~~P~i~f~gR 448 (598)
+..+. .+..|+.|||+|+. ..|+|. |+|||+++++. ...+.|+||
T Consensus 342 ------------g~~~~--~~~~g~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~g~y~TGDl~~~~~----dG~l~~~GR 403 (505)
T 3nyq_A 342 ------------GTPIA--ALDGESVGEIQVRGPNLFTEYLNRPDATAAAFTEDGFFRTGDMAVRDP----DGYVRIVGR 403 (505)
T ss_dssp --------------CCC--CCCSCCCEEEEEESTTSCCEETTCHHHHHHTBCTTSCEEEEEEEEECT----TSCEEEEEE
T ss_pred ------------CCCcc--cCCCCceEEEEEecCchhhhhCCChhHhhhhhcCCCCCccCCeEEECC----CccEEEeCC
Confidence 23322 12348999999965 467763 99999999985 678999999
Q ss_pred c-CceEeeceeecCHHHHHHHHHHHHhhhhccCCeeeeeEEeeccCCCCc-eEEEEEEecCCCccchHHHHHHHHHhhc
Q 007568 449 R-KLILTVNIDKNTEKDLQLVVDRGSQLLNKTGAELVDFTSHADIVNQPG-HYIIYWEIKGDVEEGVLNQCCHEMDVSF 525 (598)
Q Consensus 449 ~-~~~l~~~Gekv~e~~v~~av~~~~~~l~~~g~~l~~f~~~~~~~~~~~-~Y~~~vE~~~~~~~~~l~~~~~~ld~~l 525 (598)
. +++++++|++|++.+||++|.+. .+ +.+..+........+ .-+.++...........+++.+.+.+.|
T Consensus 404 ~~d~~ik~~G~~v~~~eIE~~l~~~------p~--V~~a~Vv~~~~~~~g~~l~a~vv~~~~~~~~~~~~l~~~l~~~L 474 (505)
T 3nyq_A 404 KATDLIKSGGYKIGAGEIENALLEH------PE--VREAAVTGEPDPDLGERIVAWIVPADPAAPPALGTLADHVAARL 474 (505)
T ss_dssp SSCCCEEETTEEECHHHHHHHHTTS------TT--EEEEEEEEEEETTTEEEEEEEEEESSTTSCCCHHHHHHHHHHHT
T ss_pred ccCceEEeCCEEECHHHHHHHHHHC------cC--ccEEEEEeeECCCCCcEEEEEEEECCCCCCCCHHHHHHHHHhhC
Confidence 7 59999999999999999998753 22 344444321111112 3345565543222234455555666665
No 15
>1mdb_A 2,3-dihydroxybenzoate-AMP ligase; adenylation domain, peptide synthetase, antibiotic biosynthesis, siderophore formation; HET: AMP DBH; 2.15A {Bacillus subtilis} SCOP: e.23.1.1 PDB: 1md9_A* 1mdf_A
Probab=99.51 E-value=3.2e-13 Score=149.95 Aligned_cols=131 Identities=15% Similarity=0.191 Sum_probs=90.8
Q ss_pred CCCCceeEEEEccC---hHHHHHHHHHHhCCCCeecCcccCCCcceeecCCCCCCC----CCcceeeecCceEEEEEecC
Q 007568 310 WPNAKYVYSIMTGS---MQHYLKKLRHYAGDLPLVSADYGSTESWIGVNVDPSLPP----EDVTFAVIPTFSYFEFIPIH 382 (598)
Q Consensus 310 wP~l~~i~~~~~g~---~~~y~~~l~~~~g~~~i~~~~ygaSE~~i~~~~~~~~~~----~~~~~~l~~~~~~~EFip~~ 382 (598)
+++|+. +++|| .....+++++.+ +++++ +.||+||+.+.+... ..+. ...|. ..++..-...++.
T Consensus 297 l~~lr~---~~~gG~~l~~~~~~~~~~~~-~~~~~-~~YG~TE~~~~~~~~-~~~~~~~~~~~G~-p~~~~~~~~i~d~- 368 (539)
T 1mdb_A 297 LSSLQV---LQVGGAKFSAEAARRVKAVF-GCTLQ-QVFGMAEGLVNYTRL-DDPEEIIVNTQGK-PMSPYDESRVWDD- 368 (539)
T ss_dssp CTTCCE---EEEESSCCCHHHHTTHHHHT-CSEEE-EEEECTTSCEEECCT-TSCHHHHHHCCCE-ESSTTCEEEEECT-
T ss_pred ccceeE---EEEcCCCCCHHHHHHHHHHh-CCcEE-EEEcCCCCcccccCC-CCcHHhcCCCCCc-ccCCCceEEEECC-
Confidence 468884 44444 556667777778 58898 999999986654321 1110 01122 1222222344431
Q ss_pred CcccCCCCCCCCCCCCccccCCCCCCCCeEEEEEcc---cCceec--------------cccCCEEEEccccCCCCEEEE
Q 007568 383 RRKQDCNSAIDDFIEDEPVPLSQVKLGQEYEIVLTS---FTGLYR--------------YRLGDVVEVAGFHKGTPKLNF 445 (598)
Q Consensus 383 ~~~~~~~~~~~~~~~~~~l~~~eve~G~~yeLVvTt---~~Gl~R--------------Yr~GDvv~v~g~~~~~P~i~f 445 (598)
+++. +.+|+.|||+|+. ..|+|. |+|||+++++. ...+.|
T Consensus 369 --------------~~~~-----~~~g~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~g~~~TGDlg~~~~----dG~l~~ 425 (539)
T 1mdb_A 369 --------------HDRD-----VKPGETGHLLTRGPYTIRGYYKAEEHNAASFTEDGFYRTGDIVRLTR----DGYIVV 425 (539)
T ss_dssp --------------TSCB-----CCTTCCEEEEEECTTSCSSCTTCHHHHHHHBCTTSCEEEEEEEEECT----TSCEEE
T ss_pred --------------CCCC-----CcCCCcceEEeeCcccchhhcCChhhhhhhccCCCCeecCceEEECC----CCcEEE
Confidence 1333 5689999999965 357663 99999999985 678999
Q ss_pred EeecCceEeeceeecCHHHHHHHHHH
Q 007568 446 VCRRKLILTVNIDKNTEKDLQLVVDR 471 (598)
Q Consensus 446 ~gR~~~~l~~~Gekv~e~~v~~av~~ 471 (598)
+||.||+++++|++|++.+||++|.+
T Consensus 426 ~GR~dd~ik~~G~~v~p~eIE~~l~~ 451 (539)
T 1mdb_A 426 EGRAKDQINRGGEKVAAEEVENHLLA 451 (539)
T ss_dssp EEEGGGCEECSSCEECHHHHHHHHTT
T ss_pred eccccceEEECCEEECHHHHHHHHHh
Confidence 99999999999999999999999974
No 16
>1t5h_X 4-chlorobenzoyl COA ligase; adenylate-forming coenzyme A ligase domain alternation confo change; 2.00A {Alcaligenes SP} SCOP: e.23.1.1 PDB: 1t5d_X 3cw9_A* 3cw8_X* 2qvz_X* 2qw0_X* 3dlp_X* 2qvx_X* 2qvy_X*
Probab=99.50 E-value=1.2e-12 Score=143.97 Aligned_cols=133 Identities=17% Similarity=0.137 Sum_probs=90.8
Q ss_pred CCCCceeEEEEccC---hHHHHHHHHHHhCCCCeecCcccCCCcceeecCCCCCCCCCcceeeecCceEEEEEecCCccc
Q 007568 310 WPNAKYVYSIMTGS---MQHYLKKLRHYAGDLPLVSADYGSTESWIGVNVDPSLPPEDVTFAVIPTFSYFEFIPIHRRKQ 386 (598)
Q Consensus 310 wP~l~~i~~~~~g~---~~~y~~~l~~~~g~~~i~~~~ygaSE~~i~~~~~~~~~~~~~~~~l~~~~~~~EFip~~~~~~ 386 (598)
+++|+. +.+|| ....++++++.+| ++++ +.||+||+.+.+... ....+..+. ..++. -+..++.+.
T Consensus 271 l~~lr~---~~~gG~~l~~~~~~~~~~~~~-~~~~-~~YG~TE~~~~~~~~-~~~~~~~g~-p~~~~-~~~i~~~~~--- 339 (504)
T 1t5h_X 271 LDSLRH---VTFAGATMPDAVLETVHQHLP-GEKV-NIYGTTEAMNSLYMR-QPKTGTEMA-PGFFS-EVRIVRIGG--- 339 (504)
T ss_dssp CTTCCE---EEECCTTCCHHHHHHHHHHCC-SEEE-EEEEETTTEEEEEEE-SCSSSSEEB-CCTTC-CEEEECTTS---
T ss_pred CccccE---EEEcCCcCCHHHHHHHHHhcC-ccee-eeecccccccccccc-CCCCCcccc-CCCCC-ceeEEeccC---
Confidence 567884 44454 5566777888885 7888 999999984433221 111111111 11222 223333221
Q ss_pred CCCCCCCCCCCCccccCCCCCCCCeEEEEEc-c---cCceec-------------cccCCEEEEccccCCCCEEEEEeec
Q 007568 387 DCNSAIDDFIEDEPVPLSQVKLGQEYEIVLT-S---FTGLYR-------------YRLGDVVEVAGFHKGTPKLNFVCRR 449 (598)
Q Consensus 387 ~~~~~~~~~~~~~~l~~~eve~G~~yeLVvT-t---~~Gl~R-------------Yr~GDvv~v~g~~~~~P~i~f~gR~ 449 (598)
...+ .+.+|+.|||+|+ . ..|+|+ |+|||+++++. ...+.|+||.
T Consensus 340 ---------~~~~-----~~~~g~~GEl~v~gg~~~~~GY~~~~~~t~~~f~~g~~~TGDlg~~~~----dG~l~~~GR~ 401 (504)
T 1t5h_X 340 ---------GVDE-----IVANGEEGELIVAASDSAFVGYLNQPQATAEKLQDGWYRTSDVAVWTP----EGTVRILGRV 401 (504)
T ss_dssp ---------CTTC-----BCCTTCCEEEEEECCTTSCCCBTTCHHHHHHHEETTEEEEEEEEEECT----TSCEEEEEEG
T ss_pred ---------CCCC-----cCCCCCcceEEEeCCceeeceecCCchhhhhhhcCCccccCcEEEECC----CceEEEeCcc
Confidence 1112 3568999999998 3 368886 99999999985 6789999999
Q ss_pred CceEeeceeecCHHHHHHHHHH
Q 007568 450 KLILTVNIDKNTEKDLQLVVDR 471 (598)
Q Consensus 450 ~~~l~~~Gekv~e~~v~~av~~ 471 (598)
||+++++|++|++.+||+++.+
T Consensus 402 dd~ik~~G~~v~p~eIE~~l~~ 423 (504)
T 1t5h_X 402 DDMIISGGENIHPSEIERVLGT 423 (504)
T ss_dssp GGCEEETTEEECHHHHHHHHTT
T ss_pred cCEEEECCEEECHHHHHHHHHh
Confidence 9999999999999999999974
No 17
>3g7s_A Long-chain-fatty-acid--COA ligase (FADD-1); protein structure initiative, PSI-II, NYSGXRC, 11193J, structural genomics; 2.15A {Archaeoglobus fulgidus dsm 4304}
Probab=99.50 E-value=1.9e-13 Score=151.98 Aligned_cols=135 Identities=21% Similarity=0.281 Sum_probs=79.4
Q ss_pred cCCCCceeEEEEccC---hHHHHHHHHHH----hCC--CCeecCcccCCCcceeecCCCC---CCCCCcceeeecCceEE
Q 007568 309 LWPNAKYVYSIMTGS---MQHYLKKLRHY----AGD--LPLVSADYGSTESWIGVNVDPS---LPPEDVTFAVIPTFSYF 376 (598)
Q Consensus 309 lwP~l~~i~~~~~g~---~~~y~~~l~~~----~g~--~~i~~~~ygaSE~~i~~~~~~~---~~~~~~~~~l~~~~~~~ 376 (598)
-++++++ +.+|| .....+++.+. ++. ++++ +.||+||+...+...+. ......+. ..++ .-+
T Consensus 294 ~~~~lr~---~~~gg~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~YG~TE~~~~~~~~~~~~~~~~~~~G~-p~~~-~~~ 367 (549)
T 3g7s_A 294 DWSYLKV---FATGAWPVAPALVEKLLKLAAEKCNNPRLRHN-QIWGMTEACPMVTTNPPLRLDKSTTQGV-PMSD-IEL 367 (549)
T ss_dssp CCTTCCE---EEEESSCCCHHHHHHHHHHHHHHSSCTTCEEE-EEEECGGGSSEEEECCGGGGGGTTSCCE-ECTT-CEE
T ss_pred CccceeE---EEeCCccCCHHHHHHHHHHHHhhcCCcccccc-ceEeccccchhhhcCCccccCcCCCccc-cCCC-CEE
Confidence 3677884 44444 45556666665 542 7888 99999997543222111 11111222 2233 344
Q ss_pred EEEecCCcccCCCCCCCCCCCCccccCCCCCCCCeEEEEEcc---cCcee------------------ccccCCEEEEcc
Q 007568 377 EFIPIHRRKQDCNSAIDDFIEDEPVPLSQVKLGQEYEIVLTS---FTGLY------------------RYRLGDVVEVAG 435 (598)
Q Consensus 377 EFip~~~~~~~~~~~~~~~~~~~~l~~~eve~G~~yeLVvTt---~~Gl~------------------RYr~GDvv~v~g 435 (598)
+.++.+ +++. +.+|+.|||+|+. ..|+| .|+|||+++++.
T Consensus 368 ~i~d~~--------------~g~~-----~~~g~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~~~g~~~~~TGDl~~~~~ 428 (549)
T 3g7s_A 368 KVISLE--------------DGRE-----LGVGESGEIVIRGPNIFKGYWKREKENQECWWYDEKGRKFFRTGDVGFIDE 428 (549)
T ss_dssp EEECSS--------------SCCE-----ECTTCCEEEEEESTTSCSEETTCTTGGGTSEEECTTCCEEEEEEEEEEECT
T ss_pred EEEeCC--------------CCcC-----CCCCCceEEEEECcchhhhhCCChhhhhhhhhccCCCCceEccCcEEEEcC
Confidence 555533 2333 4589999999965 35655 599999999985
Q ss_pred ccCCCCEEEEEeecCceEeeceeecCHHHHHHHHHHH
Q 007568 436 FHKGTPKLNFVCRRKLILTVNIDKNTEKDLQLVVDRG 472 (598)
Q Consensus 436 ~~~~~P~i~f~gR~~~~l~~~Gekv~e~~v~~av~~~ 472 (598)
...+.|+||.||+++++|++|++.+||++|.+.
T Consensus 429 ----dG~l~~~GR~dd~ik~~G~~v~p~eIE~~l~~~ 461 (549)
T 3g7s_A 429 ----EGFLHFQDRVKEVIKYKGYTIAPFELEALLMKH 461 (549)
T ss_dssp ----TSCEEEEEEC------------CHHHHHHHTTS
T ss_pred ----CceEEEeccccceEEECCEEECHHHHHHHHHhC
Confidence 789999999999999999999999999998753
No 18
>3l8c_A D-alanine--poly(phosphoribitol) ligase subunit 1; structural genomics, DLTA, ATP-binding, cytoplasm, nucleotide-binding; 2.41A {Streptococcus pyogenes serotype M6} PDB: 3lgx_A*
Probab=99.50 E-value=2.7e-13 Score=149.42 Aligned_cols=135 Identities=16% Similarity=0.215 Sum_probs=86.8
Q ss_pred cCCCCceeEEEEccC--hHHHHHHHHHHhCCCCeecCcccCCCcceeecC-CCC------CCCCCcceeeecCceEEEEE
Q 007568 309 LWPNAKYVYSIMTGS--MQHYLKKLRHYAGDLPLVSADYGSTESWIGVNV-DPS------LPPEDVTFAVIPTFSYFEFI 379 (598)
Q Consensus 309 lwP~l~~i~~~~~g~--~~~y~~~l~~~~g~~~i~~~~ygaSE~~i~~~~-~~~------~~~~~~~~~l~~~~~~~EFi 379 (598)
-.|+|+.+ +.+|. .....+++.+.+++++++ +.||+||+.+.+.. ... ......+. ..|+. -...+
T Consensus 262 ~~~~lr~~--~~gG~~l~~~~~~~~~~~~~~~~i~-~~YG~TE~~~~~~~~~~~~~~~~~~~~~~vG~-p~~~~-~~~i~ 336 (521)
T 3l8c_A 262 KMPALTHF--YFDGEELTVSTARKLFERFPSAKII-NAYGPTEATVALSAIEITREMVDNYTRLPIGY-PKPDS-PTYII 336 (521)
T ss_dssp TCTTCCEE--EECSSCCCHHHHHHHHHHCTTCEEE-EEECCGGGSSCSEEEEECHHHHHHCSSCEEEE-ECTTS-CEEEE
T ss_pred cCccceEE--EEecccCCHHHHHHHHHHCCCceEE-eCcCccHHhhhhceeecccccccCCCcccccc-ccCCC-EEEEE
Confidence 45678842 23343 556667788888889999 99999997542211 000 00101122 22232 23334
Q ss_pred ecCCcccCCCCCCCCCCCCccccCCCCCCCCeEEEEEcc---cCceec-----------------cccCCEEEEccccCC
Q 007568 380 PIHRRKQDCNSAIDDFIEDEPVPLSQVKLGQEYEIVLTS---FTGLYR-----------------YRLGDVVEVAGFHKG 439 (598)
Q Consensus 380 p~~~~~~~~~~~~~~~~~~~~l~~~eve~G~~yeLVvTt---~~Gl~R-----------------Yr~GDvv~v~g~~~~ 439 (598)
+. ++. ++.+|+.|||+|+. ..|+|+ |+|||+++++.
T Consensus 337 d~---------------~g~-----~~~~g~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~~~~~~~~TGDlg~~d~---- 392 (521)
T 3l8c_A 337 DE---------------DGK-----ELSSGEQGEIIVTGPAVSKGYLNNPEKTAEAFFTFKGQPAYHTGDIGSLTE---- 392 (521)
T ss_dssp CT---------------TSC-----BCCTTCCEEEEEESTTSCSCBTTCHHHHHHHEEEETTEEEEEEEEEEEECS----
T ss_pred CC---------------CcC-----CCCCCCceEEEecccccChhhcCCchHhhccCcCCCCceeeeCCCEEEEeC----
Confidence 32 133 35689999999965 467763 99999999985
Q ss_pred CCEEEEEeecCceEeeceeecCHHHHHHHHHHH
Q 007568 440 TPKLNFVCRRKLILTVNIDKNTEKDLQLVVDRG 472 (598)
Q Consensus 440 ~P~i~f~gR~~~~l~~~Gekv~e~~v~~av~~~ 472 (598)
...+.|+||.+|+++++|++|++.+||++|.+.
T Consensus 393 dG~l~~~GR~~d~i~~~G~~v~p~eIE~~l~~~ 425 (521)
T 3l8c_A 393 DNILLYGGRLDFQIKYAGYRIELEDVSQQLNQS 425 (521)
T ss_dssp SSCEEEEEEGGGBCC-----CBHHHHHHHHHTS
T ss_pred CCeEEEeCcccceEeECCEEeCHHHHHHHHHcC
Confidence 678999999999999999999999999999853
No 19
>3kxw_A Saframycin MX1 synthetase B; fatty acid AMP ligase, SGX, acyl adenylate, structural genom 2, protein structure initiative; HET: 1ZZ; 1.85A {Legionella pneumophila subsp} PDB: 3lnv_A*
Probab=99.48 E-value=3.2e-13 Score=150.87 Aligned_cols=65 Identities=18% Similarity=0.208 Sum_probs=54.8
Q ss_pred CCCCCCeEEEEEcc---cCcee----------------------ccccCCEEEEccccCCCCEEEEEeecCceEeeceee
Q 007568 405 QVKLGQEYEIVLTS---FTGLY----------------------RYRLGDVVEVAGFHKGTPKLNFVCRRKLILTVNIDK 459 (598)
Q Consensus 405 eve~G~~yeLVvTt---~~Gl~----------------------RYr~GDvv~v~g~~~~~P~i~f~gR~~~~l~~~Gek 459 (598)
++.+|+.|||+|+. ..|+| .|+|||+++++ ...+.|+||.||+++++|++
T Consensus 393 ~~~~g~~GEl~v~g~~v~~GY~~~p~~t~~~f~~~~~~~~~g~~~~~TGDlg~~d-----dG~l~~~GR~dd~Ik~~G~~ 467 (590)
T 3kxw_A 393 PCDFDQVGEIWVQSNSVAKGYWNQPEETRHAFAGKIKDDERSAIYLRTGDLGFLH-----ENELYVTGRIKDLIIIYGKN 467 (590)
T ss_dssp BCCTTBCEEEEEESTTSCCCBTTCHHHHHHHHCBCCTTC---CCBEEEEEEEEEE-----TTEEEEEEESSCHHHHHHHT
T ss_pred CCCCCCEEEEEEeCCcccccccCChhHHHHHHhccccCCCCCCcEEecCcEEEEE-----CCEEEEEcCccceEEECCEe
Confidence 36689999999965 35665 59999999887 35799999999999999999
Q ss_pred cCHHHHHHHHHHHHh
Q 007568 460 NTEKDLQLVVDRGSQ 474 (598)
Q Consensus 460 v~e~~v~~av~~~~~ 474 (598)
|++.+||.+|....+
T Consensus 468 v~p~eIE~~l~~~~~ 482 (590)
T 3kxw_A 468 HYPQDIEFSLMHSPL 482 (590)
T ss_dssp THHHHHHHHHHHSGG
T ss_pred cCHHHHHHHHHhcCc
Confidence 999999999965433
No 20
>3ivr_A Putative long-chain-fatty-acid COA ligase; structural genomics, PSI-2, protein S initiative, fatty acid synthesis; HET: GOL; 2.00A {Rhodopseudomonas palustris} SCOP: e.23.1.0
Probab=99.47 E-value=9.6e-14 Score=152.73 Aligned_cols=133 Identities=14% Similarity=0.174 Sum_probs=73.6
Q ss_pred CCCCceeEEEEccChHHHHHHHHHHhCCCCeecCcccCCCcce-eecCCCCCCCCCcceeeecCceEEEEEecCCcccCC
Q 007568 310 WPNAKYVYSIMTGSMQHYLKKLRHYAGDLPLVSADYGSTESWI-GVNVDPSLPPEDVTFAVIPTFSYFEFIPIHRRKQDC 388 (598)
Q Consensus 310 wP~l~~i~~~~~g~~~~y~~~l~~~~g~~~i~~~~ygaSE~~i-~~~~~~~~~~~~~~~~l~~~~~~~EFip~~~~~~~~ 388 (598)
.++++ .+..|+....++++++.+++++++ +.||+||+.. +........+...+. ..++ .-++.++.+
T Consensus 271 l~~lr---~~~~~g~~~~~~~~~~~~~~~~~~-~~YG~TE~~~~~~~~~~~~~~~~~G~-p~~~-~~~~i~d~~------ 338 (509)
T 3ivr_A 271 LASLR---AVTGLDTPETIERFEATCPNATFW-ATFGQSETSGLSTFAPYRDRPKSAGR-PLFW-RTVAVVDAE------ 338 (509)
T ss_dssp GTTCC---EEEEECCHHHHHHHHHHCTTCEEE-EEEEEGGGTEEEEEEEGGGSTTSCCE-ECTT-CEEEEECTT------
T ss_pred hhhhh---eecccCChHHHHHHHHhcCCCeEE-cccCccccccccccCccccCCCcccc-cCCC-cEEEEECCC------
Confidence 45677 445566557778888889889999 9999999753 222111111111222 2233 334455422
Q ss_pred CCCCCCCCCCccccCCCCCCCCeEEEEEcc---cCceec-------------cccCCEEEEccccCCCCEEEEEeec--C
Q 007568 389 NSAIDDFIEDEPVPLSQVKLGQEYEIVLTS---FTGLYR-------------YRLGDVVEVAGFHKGTPKLNFVCRR--K 450 (598)
Q Consensus 389 ~~~~~~~~~~~~l~~~eve~G~~yeLVvTt---~~Gl~R-------------Yr~GDvv~v~g~~~~~P~i~f~gR~--~ 450 (598)
++. +.+|+.|||+|+. ..|+|+ |+|||+++++. ...+.|+||. +
T Consensus 339 ---------~~~-----~~~g~~GEl~v~g~~~~~gY~~~~~~t~~~f~~g~~~TGDl~~~~~----dG~l~~~GR~d~~ 400 (509)
T 3ivr_A 339 ---------DRP-----LPPGEVGEIVLRGPTVFKGYWNNAAATQHAFRNGWHHTGDMGRFDA----DGYLFYAGRAPEK 400 (509)
T ss_dssp ---------SCB-----CCTTCCEEEEEESTTSCCEETTCHHHHHHHTGGGSEEEEEEEEECT----TSCEEEEEEC---
T ss_pred ---------CCC-----CCCCCceEEEEecCCccccccCCHHHhHHHhhcCCcccccEEEECC----CceEEEeCCCCcc
Confidence 333 5689999999965 468886 99999999985 6789999999 9
Q ss_pred ceEeeceeecCHHHHHHHHHHH
Q 007568 451 LILTVNIDKNTEKDLQLVVDRG 472 (598)
Q Consensus 451 ~~l~~~Gekv~e~~v~~av~~~ 472 (598)
|+++++|++|++.+||+++.+.
T Consensus 401 d~ik~~G~~v~p~eiE~~l~~~ 422 (509)
T 3ivr_A 401 ELIKTGGENVYPAEVEGALKQH 422 (509)
T ss_dssp ----------------------
T ss_pred eeEEECCEEECHHHHHHHHHhC
Confidence 9999999999999999999864
No 21
>2v7b_A Benzoate-coenzyme A ligase; benzoate oxidation, benzoate COA ligase; 1.84A {Burkholderia xenovorans}
Probab=99.47 E-value=1.5e-12 Score=143.82 Aligned_cols=129 Identities=12% Similarity=0.074 Sum_probs=87.9
Q ss_pred CCceeEEEEccC---hHHHHHHHHHHhCCCCeecCcccCCCc-ceeecCCC-CCCCCCcceeeecCceEEEEEecCCccc
Q 007568 312 NAKYVYSIMTGS---MQHYLKKLRHYAGDLPLVSADYGSTES-WIGVNVDP-SLPPEDVTFAVIPTFSYFEFIPIHRRKQ 386 (598)
Q Consensus 312 ~l~~i~~~~~g~---~~~y~~~l~~~~g~~~i~~~~ygaSE~-~i~~~~~~-~~~~~~~~~~l~~~~~~~EFip~~~~~~ 386 (598)
+++. +.+|| ....++++++.+ +++++ +.||+||+ .+.+...+ .+..+..+. ..+ +.-++.++.+
T Consensus 301 ~lr~---~~~gGe~l~~~~~~~~~~~~-g~~i~-~~YG~TE~~~~~~~~~~~~~~~~~~G~-p~~-~~~~~i~d~~---- 369 (529)
T 2v7b_A 301 AIRI---CTSAGEALPREIGERFTAHF-GCEIL-DGIGSTEMLHIFLSNRAGAVEYGTTGR-PVP-GYEIELRDEA---- 369 (529)
T ss_dssp CCCE---EEECSSCCCHHHHHHHHHHH-SCCEE-EEEECTTTSSEEEECCTTCCCTTSCCE-ECT-TCEEEEECTT----
T ss_pred ceEE---EEEcCCCCCHHHHHHHHHHh-CCcee-eeEchhhcCceeeccccCCCccCCccc-CCC-CCEEEEECCC----
Confidence 6774 44444 566777788878 58999 99999997 44332211 122222222 223 3445555522
Q ss_pred CCCCCCCCCCCCccccCCCCCCCCeEEEEEcc---cCceec-------------cccCCEEEEccccCCCCEEEEEeecC
Q 007568 387 DCNSAIDDFIEDEPVPLSQVKLGQEYEIVLTS---FTGLYR-------------YRLGDVVEVAGFHKGTPKLNFVCRRK 450 (598)
Q Consensus 387 ~~~~~~~~~~~~~~l~~~eve~G~~yeLVvTt---~~Gl~R-------------Yr~GDvv~v~g~~~~~P~i~f~gR~~ 450 (598)
++. +.+|+.|||+|+. ..|+|+ |+|||+++++. ...+.|+||.|
T Consensus 370 -----------g~~-----~~~g~~GEl~v~g~~~~~gY~~~~~~t~~~f~~~~~~TGDl~~~~~----~G~l~~~GR~d 429 (529)
T 2v7b_A 370 -----------GHA-----VPDGEVGDLYIKGPSAAVMYWNNREKSRATFLGEWIRSGDKYCRLP----NGCYVYAGRSD 429 (529)
T ss_dssp -----------SCB-----CCTTSCEEEEEECTTCCCCBTTCHHHHHHHEETTEEEEEEEEEECT----TSCEEEEEEGG
T ss_pred -----------CCC-----CCCCCccEEEEecCCcccccCCChHHHHHhhhcCCcccCceEEECC----CccEEEeCccC
Confidence 333 4589999999976 467775 89999999985 67899999999
Q ss_pred ceEeeceeecCHHHHHHHHHH
Q 007568 451 LILTVNIDKNTEKDLQLVVDR 471 (598)
Q Consensus 451 ~~l~~~Gekv~e~~v~~av~~ 471 (598)
|+++++|++|++.+||++|.+
T Consensus 430 d~ik~~G~~v~p~eIE~~l~~ 450 (529)
T 2v7b_A 430 DMLKVSGQYVSPVEVEMVLVQ 450 (529)
T ss_dssp GCBC----CBCHHHHHHHHTT
T ss_pred CeEEECCEEECHHHHHHHHHh
Confidence 999999999999999999975
No 22
>1pg4_A Acetyl-COA synthetase; AMP-forming, adenylate-forming, thioester-forming, ligase; HET: COA PRX; 1.75A {Salmonella enterica} SCOP: e.23.1.1 PDB: 1pg3_A* 2p2f_A* 2p2b_A* 2p2q_A* 2p2j_A* 2p20_A* 2p2m_A*
Probab=99.46 E-value=1.8e-12 Score=147.50 Aligned_cols=229 Identities=13% Similarity=0.060 Sum_probs=125.9
Q ss_pred CCCCceeEEEEccC---hHHHHHHHHHHhC--CCCeecCcccCCCcceeecC-CCC---CCCCCcceeeecCceEEEEEe
Q 007568 310 WPNAKYVYSIMTGS---MQHYLKKLRHYAG--DLPLVSADYGSTESWIGVNV-DPS---LPPEDVTFAVIPTFSYFEFIP 380 (598)
Q Consensus 310 wP~l~~i~~~~~g~---~~~y~~~l~~~~g--~~~i~~~~ygaSE~~i~~~~-~~~---~~~~~~~~~l~~~~~~~EFip 380 (598)
.++|++ +.+|| .....+.+.+.+| +++++ +.||+||+...+.. .+. ..++..+. ..++. -+..++
T Consensus 377 l~sLr~---i~~gGe~l~~~~~~~~~~~~g~~~~~i~-~~YG~TE~~~~~~~~~~~~~~~~~~s~G~-p~~g~-~v~i~d 450 (652)
T 1pg4_A 377 RSSLRI---LGSVGEPINPEAWEWYWKKIGKEKCPVV-DTWWQTETGGFMITPLPGAIELKAGSATR-PFFGV-QPALVD 450 (652)
T ss_dssp CTTCCE---EEEESSCCCHHHHHHHHHHTTTTCSCEE-EEBCCGGGSSCSBCCCTTTCCBCTTCCBS-BCTTC-CEEEEC
T ss_pred cCceEE---EEEecCCCCHHHHHHHHHHhCCCCCcEE-ccccCcccccceecCCCCCcCccCCcccc-CcCCC-eEEEEC
Confidence 467884 44444 4556667777775 38899 99999997432211 111 11111222 22332 223333
Q ss_pred cCCcccCCCCCCCCCCCCccccCCCCCCCCeEEEEEcc-----cCceec----------------cccCCEEEEccccCC
Q 007568 381 IHRRKQDCNSAIDDFIEDEPVPLSQVKLGQEYEIVLTS-----FTGLYR----------------YRLGDVVEVAGFHKG 439 (598)
Q Consensus 381 ~~~~~~~~~~~~~~~~~~~~l~~~eve~G~~yeLVvTt-----~~Gl~R----------------Yr~GDvv~v~g~~~~ 439 (598)
. +++. +..|+.|||+|+. ..|+|. |+|||+++++.
T Consensus 451 ~---------------~g~~-----v~~g~~GEl~i~g~~p~~~~gY~~~~e~~~~~~~~~~~g~y~TGDlg~~d~---- 506 (652)
T 1pg4_A 451 N---------------EGHP-----QEGATEGNLVITDSWPGQARTLFGDHERFEQTYFSTFKNMYFSGDGARRDE---- 506 (652)
T ss_dssp T---------------TCCB-----CCSSEEEEEEECSCCTTCCCEETTCHHHHHHHHHSSSTTSEEEEEEEEECT----
T ss_pred C---------------CCCC-----cCCCceEEEEEccCCCchhhhhcCCHHHHHhhhhhcCCCEEECCcEEEEcC----
Confidence 1 2333 4579999999976 244542 99999999985
Q ss_pred CCEEEEEeecCceEeeceeecCHHHHHHHHHHHHhhhhccCCeeeeeEEee-ccCCCCceEEEEEEecCC--CccchHHH
Q 007568 440 TPKLNFVCRRKLILTVNIDKNTEKDLQLVVDRGSQLLNKTGAELVDFTSHA-DIVNQPGHYIIYWEIKGD--VEEGVLNQ 516 (598)
Q Consensus 440 ~P~i~f~gR~~~~l~~~Gekv~e~~v~~av~~~~~~l~~~g~~l~~f~~~~-~~~~~~~~Y~~~vE~~~~--~~~~~l~~ 516 (598)
...+.|+||.||+++++|++|...|||++|.+. .+ +.+-.++. +.......-+.||.+..+ .+.+..++
T Consensus 507 dG~l~i~GR~dd~Ik~~G~rI~~~eIE~~l~~~------p~--V~ea~Vvg~~~~~~g~~l~a~Vv~~~~~~~~~~~~~~ 578 (652)
T 1pg4_A 507 DGYYWITGRVDDVLNVSGHRLGTAEIESALVAH------PK--IAEAAVVGIPHAIKGQAIYAYVTLNHGEEPSPELYAE 578 (652)
T ss_dssp TSCEEEEEESSSEEEETTEEEEHHHHHHHHHHS------TT--EEEEEEEEEEETTTEEEEEEEEEECTTCCCCHHHHHH
T ss_pred CCcEEEEecCCCEEEECCEEECHHHHHHHHHhC------CC--cceEEEEEEEcCCCCeEEEEEEEECCCCCCCHHHHHH
Confidence 678999999999999999999999999999853 12 34444432 111111233456766433 22222344
Q ss_pred HHHHHHhhcCCchhHhhhhcCCcCCeEEEEec------cchH--HHHHHHHhcCCCCCCCCCCCcccCCHHHHHHHhhcc
Q 007568 517 CCHEMDVSFVDPGYVVSRRTNSIGPLELCIVK------RGAF--RMILDYFVGNGAALSQFKTPRCTSNQVLVRILNDWT 588 (598)
Q Consensus 517 ~~~~ld~~l~n~~Y~~~R~~g~l~p~~v~~v~------~g~f--~~~~~~~~~~G~~~~Q~K~Pr~~~~~~~~~~l~~~~ 588 (598)
+.+.+.+.| +.|. .|-.|.+|+ .|-. ..+++.. .+. ..+++.+--+.|++.++.+.+.+
T Consensus 579 l~~~l~~~l--~~~~--------~P~~i~~v~~lP~T~sGKi~R~~L~~~~--~~~-~~~~~~~~~l~~p~~~~~~~~~~ 645 (652)
T 1pg4_A 579 VRNWVRKEI--GPLA--------TPDVLHWTDSLPKTRSGKIMRRILRKIA--AGD-TSNLGDTSTLADPGVVEKLLEEK 645 (652)
T ss_dssp HHHHHHHHT--CGGG--------CCSEEEECSCCCBCTTSCBCHHHHHHHH--HTC-----------CCTTHHHHHHHHH
T ss_pred HHHHHHHhC--CCCc--------CCeEEEEcCCCCCCCCccchHHHHHHHH--hCC-CCCCCCccccCCHHHHHHHHHHh
Confidence 444455543 3333 244455543 2322 2222221 221 13567777888999999887644
Q ss_pred c
Q 007568 589 I 589 (598)
Q Consensus 589 ~ 589 (598)
.
T Consensus 646 ~ 646 (652)
T 1pg4_A 646 Q 646 (652)
T ss_dssp H
T ss_pred h
Confidence 3
No 23
>3rg2_A Enterobactin synthase component E (ENTE), 2,3-DIH dihydroxybenzoate synthetase, isochroismatase...; adenylate-forming enzymes, ANL superfamily; HET: SVS PNS; 3.10A {Escherichia coli}
Probab=99.46 E-value=7.9e-13 Score=149.22 Aligned_cols=134 Identities=14% Similarity=0.216 Sum_probs=91.8
Q ss_pred cCCCCceeEEEEccC---hHHHHHHHHHHhCCCCeecCcccCCCcceeecCCCCCCC---CCcceeeecCceEEEEEecC
Q 007568 309 LWPNAKYVYSIMTGS---MQHYLKKLRHYAGDLPLVSADYGSTESWIGVNVDPSLPP---EDVTFAVIPTFSYFEFIPIH 382 (598)
Q Consensus 309 lwP~l~~i~~~~~g~---~~~y~~~l~~~~g~~~i~~~~ygaSE~~i~~~~~~~~~~---~~~~~~l~~~~~~~EFip~~ 382 (598)
-.++|+. +..|| .....+++.+.+ +++++ +.||+||+.+.......... ...+..+.++ .-+..++.
T Consensus 300 ~l~~lr~---i~~gGe~l~~~~~~~~~~~~-~~~~~-~~YG~tE~~~~~~~~~~~~~~~~~~~G~p~~~~-~~~~i~d~- 372 (617)
T 3rg2_A 300 QLASLKL---LQVGGARLSATLAARIPAEI-GCQLQ-QVFGMAEGLVNYTRLDDSAEKIIHTQGYPMCPD-DEVWVADA- 372 (617)
T ss_dssp TTTTCCE---EEEESSCCCHHHHHHHHHHT-CSEEE-EEEEETTEEEEECCTTSCHHHHHHCCCEESCTT-CEEEEECT-
T ss_pred cCCCccE---EEEcCCcCCHHHHHHHHHHh-CCcEE-EEeccCcceeecccCCCcccccccCCCccCCCC-ceEEEECC-
Confidence 4578884 44444 556667777777 58999 99999998654332111100 0012222222 23333331
Q ss_pred CcccCCCCCCCCCCCCccccCCCCCCCCeEEEEEcc---cCceec--------------cccCCEEEEccccCCCCEEEE
Q 007568 383 RRKQDCNSAIDDFIEDEPVPLSQVKLGQEYEIVLTS---FTGLYR--------------YRLGDVVEVAGFHKGTPKLNF 445 (598)
Q Consensus 383 ~~~~~~~~~~~~~~~~~~l~~~eve~G~~yeLVvTt---~~Gl~R--------------Yr~GDvv~v~g~~~~~P~i~f 445 (598)
+++. +.+|+.|||+|+. ..|+|. |||||+++... ...+.|
T Consensus 373 --------------~~~~-----~p~G~~GEl~i~G~~v~~GY~~~p~~t~~~f~~~~~yrTGDl~~~~~----dG~l~~ 429 (617)
T 3rg2_A 373 --------------EGNP-----LPQGEVGRLMTRGPYTFRGYYKSPQHNASAFDANGFYCSGDLISIDP----EGYITV 429 (617)
T ss_dssp --------------TSCB-----CCTTCCEEEEEECSSSCSCCTTCHHHHHHHBCTTSCEEEEEEEEECT----TSCEEE
T ss_pred --------------CCCC-----CCCCCceEEEecCccccchhcCChhhhhhccCCCCceecCceEEEcC----CceEEE
Confidence 2333 4589999999965 467763 99999999985 678999
Q ss_pred EeecCceEeeceeecCHHHHHHHHHHH
Q 007568 446 VCRRKLILTVNIDKNTEKDLQLVVDRG 472 (598)
Q Consensus 446 ~gR~~~~l~~~Gekv~e~~v~~av~~~ 472 (598)
+||.|++++++|++|.+.+||.+|.+.
T Consensus 430 ~GR~dd~iki~G~ri~~~eIE~~l~~~ 456 (617)
T 3rg2_A 430 QGREKDQINRGGEKIAAEEIENLLLRH 456 (617)
T ss_dssp EEECSSEEEETTEEEEHHHHHHHHTTS
T ss_pred EeecCCEEEECCEEeCHHHHHHHHHhC
Confidence 999999999999999999999998753
No 24
>3r44_A Fatty acyl COA synthetase FADD13 (fatty-acyl-COA synthetase); ligase; HET: HIS; 1.80A {Mycobacterium tuberculosis} PDB: 3t5c_A 3t5b_A
Probab=99.46 E-value=2.5e-12 Score=142.05 Aligned_cols=130 Identities=19% Similarity=0.206 Sum_probs=86.5
Q ss_pred CCCCceeEEEEccC---hHHHHHHHHHHhCCCCeecCcccCCCcce-eecCCC---CCCCCCcceeeecCceEEEEEecC
Q 007568 310 WPNAKYVYSIMTGS---MQHYLKKLRHYAGDLPLVSADYGSTESWI-GVNVDP---SLPPEDVTFAVIPTFSYFEFIPIH 382 (598)
Q Consensus 310 wP~l~~i~~~~~g~---~~~y~~~l~~~~g~~~i~~~~ygaSE~~i-~~~~~~---~~~~~~~~~~l~~~~~~~EFip~~ 382 (598)
.|+|++ +++|| .....+++++. +++++ +.||+||+.. +....+ ....+..+. ..+ +.-++.++.
T Consensus 283 ~~~lr~---i~~gGe~l~~~~~~~~~~~--~~~~~-~~YG~TE~~~~~~~~~~~~~~~~~~~~G~-~~~-~~~~~i~d~- 353 (517)
T 3r44_A 283 APDFRY---FITGGAPMPEALIKIYAAK--NIEVV-QGYALTESCGGGTLLLSEDALRKAGSAGR-ATM-FTDVAVRGD- 353 (517)
T ss_dssp CTTCCE---EEECSSCCCHHHHHHHHHT--TCEEE-EEEECGGGTTCEEEECGGGTTTTTTCCBE-ECT-TEEEEEECT-
T ss_pred CCcccE---EEECCCCCCHHHHHHHHhc--CCcEE-EeecccccccceeecCCccccccCCCCCc-CCC-CeEEEEECC-
Confidence 467884 45555 44555555554 68999 9999999743 221111 111111222 222 223333331
Q ss_pred CcccCCCCCCCCCCCCccccCCCCCCCCeEEEEEcc---cCceec-------------cccCCEEEEccccCCCCEEEEE
Q 007568 383 RRKQDCNSAIDDFIEDEPVPLSQVKLGQEYEIVLTS---FTGLYR-------------YRLGDVVEVAGFHKGTPKLNFV 446 (598)
Q Consensus 383 ~~~~~~~~~~~~~~~~~~l~~~eve~G~~yeLVvTt---~~Gl~R-------------Yr~GDvv~v~g~~~~~P~i~f~ 446 (598)
++.. +..| .|||+|+. ..|+|. |+|||+++++. ...+.|+
T Consensus 354 --------------~~~~-----~~~g-~GEl~v~g~~v~~GY~~~p~~t~~~f~~g~~~TGDl~~~~~----dG~l~~~ 409 (517)
T 3r44_A 354 --------------DGVI-----REHG-EGEVVIKSDILLKEYWNRPEATRDAFDNGWFRTGDIGEIDD----EGYLYIK 409 (517)
T ss_dssp --------------TSCE-----ESSE-EEEEEEEETTSCSEETTCHHHHHHTEETTEEEEEEEEEECT----TSCEEEE
T ss_pred --------------CCCC-----CCCC-CeEEEEeCcchhhhhCCChhhhHhhhcCCCEecceeEEEcC----CeeEEEe
Confidence 2333 3457 89999966 477874 99999999985 6789999
Q ss_pred eecCceEeeceeecCHHHHHHHHHHH
Q 007568 447 CRRKLILTVNIDKNTEKDLQLVVDRG 472 (598)
Q Consensus 447 gR~~~~l~~~Gekv~e~~v~~av~~~ 472 (598)
||.||+++++|++|++.+||++|.+.
T Consensus 410 GR~dd~ik~~G~~v~p~eIE~~l~~~ 435 (517)
T 3r44_A 410 DRLKDMIISGGENVYPAEIESVIIGV 435 (517)
T ss_dssp ECGGGCEEETTEEECHHHHHHHHTTS
T ss_pred cCCcCEEEECCEEECHHHHHHHHHhC
Confidence 99999999999999999999998753
No 25
>3c5e_A Acyl-coenzyme A synthetase ACSM2A, mitochondrial; middle-chain acyl-COA synthetase, xenobiotic/medium-chain FA COA ligase; HET: ATP; 1.60A {Homo sapiens} PDB: 2vze_A 3b7w_A* 3day_A* 3eq6_A* 3eyn_A* 3gpc_A* 2wd9_A*
Probab=99.45 E-value=2.9e-12 Score=143.39 Aligned_cols=133 Identities=17% Similarity=0.241 Sum_probs=91.6
Q ss_pred CCCCceeEEEEccC--hHHHHHHHHHHhCCCCeecCcccCCCcceeecCCCC--CCCCCcceeeecCceEEEEEecCCcc
Q 007568 310 WPNAKYVYSIMTGS--MQHYLKKLRHYAGDLPLVSADYGSTESWIGVNVDPS--LPPEDVTFAVIPTFSYFEFIPIHRRK 385 (598)
Q Consensus 310 wP~l~~i~~~~~g~--~~~y~~~l~~~~g~~~i~~~~ygaSE~~i~~~~~~~--~~~~~~~~~l~~~~~~~EFip~~~~~ 385 (598)
+++|+.+ +.+|. ....++++++.+ +++++ +.||+||+.+.+...+. ..++..+. ..++ .-++.++.+
T Consensus 321 ~~~lr~i--~~gGe~l~~~~~~~~~~~~-g~~i~-~~YG~TE~~~~~~~~~~~~~~~~~vG~-p~~~-~~v~i~d~~--- 391 (570)
T 3c5e_A 321 FPHLQNC--VTVGESLLPETLENWRAQT-GLDIR-ESYGQTETGLTCMVSKTMKIKPGYMGT-AASC-YDVQIIDDK--- 391 (570)
T ss_dssp CTTCCEE--EEESSCCCHHHHHHHHHHH-SCCCE-EEEEETTTEEEEECCTTSCCCTTCCCE-ECTT-CCEEEECTT---
T ss_pred cccceEE--EEcCCcCCHHHHHHHHHHh-CCchh-hccchhhcccceecCcccccCCCcccc-cCCC-ceEEEECCC---
Confidence 5678853 23343 556667787777 58999 99999998543322221 11121222 2223 233444421
Q ss_pred cCCCCCCCCCCCCccccCCCCCCCCeEEEEEc-----c---cCceec-------------cccCCEEEEccccCCCCEEE
Q 007568 386 QDCNSAIDDFIEDEPVPLSQVKLGQEYEIVLT-----S---FTGLYR-------------YRLGDVVEVAGFHKGTPKLN 444 (598)
Q Consensus 386 ~~~~~~~~~~~~~~~l~~~eve~G~~yeLVvT-----t---~~Gl~R-------------Yr~GDvv~v~g~~~~~P~i~ 444 (598)
++. +.+|+.|||+|+ . ..|+|. |+|||+++++. ...+.
T Consensus 392 ------------g~~-----~~~G~~GEl~v~~~~~~g~~v~~GY~~~~~~t~~~f~~~~~~TGDlg~~d~----dG~l~ 450 (570)
T 3c5e_A 392 ------------GNV-----LPPGTEGDIGIRVKPIRPIGIFSGYVDNPDKTAANIRGDFWLLGDRGIKDE----DGYFQ 450 (570)
T ss_dssp ------------SCB-----CCTTCCEEEEEECSSBCCTTCCCEETTCHHHHHHTEETTEEEEEEEEEECT----TSCEE
T ss_pred ------------CCC-----CCCCCCCeeEEeccCCCCchhhccccCChhHhhhhhcCCccccceeEEEcC----CceEE
Confidence 333 568999999997 2 356763 99999999985 67899
Q ss_pred EEeecCceEeeceeecCHHHHHHHHHHH
Q 007568 445 FVCRRKLILTVNIDKNTEKDLQLVVDRG 472 (598)
Q Consensus 445 f~gR~~~~l~~~Gekv~e~~v~~av~~~ 472 (598)
|+||.||+++++|++|++.+||++|.+.
T Consensus 451 ~~GR~dd~Ik~~G~~V~p~eIE~~l~~~ 478 (570)
T 3c5e_A 451 FMGRADDIINSSGYRIGPSEVENALMEH 478 (570)
T ss_dssp EEEEGGGCEEETTEEECHHHHHHHHHTS
T ss_pred EEecCCCEEEECCEEECHHHHHHHHHhC
Confidence 9999999999999999999999999853
No 26
>3gqw_A Fatty acid AMP ligase; FAAL, E. coli, ATP-dependent binding enzyme family,, structural genomics, PSI-2, protein structure initiative; HET: ZZ9; 3.00A {Escherichia coli O6} PDB: 3pbk_A*
Probab=99.44 E-value=1.5e-12 Score=144.88 Aligned_cols=62 Identities=15% Similarity=0.169 Sum_probs=54.8
Q ss_pred CCCCCeEEEEEcc---cCceec-------------cccCCEEEEccccCCCCEEEEEeecCceEeeceeecCHHHHHHHH
Q 007568 406 VKLGQEYEIVLTS---FTGLYR-------------YRLGDVVEVAGFHKGTPKLNFVCRRKLILTVNIDKNTEKDLQLVV 469 (598)
Q Consensus 406 ve~G~~yeLVvTt---~~Gl~R-------------Yr~GDvv~v~g~~~~~P~i~f~gR~~~~l~~~Gekv~e~~v~~av 469 (598)
+.+|+.|||+|.. ..|+|+ |+|||++++ . ...+.|+||.||+++++|++|++.+||++|
T Consensus 406 ~~~g~~GEl~v~g~~~~~gY~~~~~~~~~~~~~g~~~TGDl~~~-~----dG~l~~~GR~dd~ik~~G~~v~p~eIE~~l 480 (576)
T 3gqw_A 406 VAERVVGHICISGPSLMSGYFGDQVSQDEIAATGWLDTGDLGYL-L----DGYLYVTGRIKDLIIIRGRNIWPQDIEYIA 480 (576)
T ss_dssp CCTTBCEEEEEESTTSCCCBTTCHHHHHHHHHHSCEEEEEEEEE-E----TTEEEEEEETTTCEEETTEEECHHHHHHHH
T ss_pred CCCCCeEEEEEeCccccccccCCccccccccCCCeeeccceEEE-E----CCEEEEEecCcceEEECCEEECHHHHHHHH
Confidence 5689999999965 467875 999999988 3 578999999999999999999999999999
Q ss_pred HHH
Q 007568 470 DRG 472 (598)
Q Consensus 470 ~~~ 472 (598)
.+.
T Consensus 481 ~~~ 483 (576)
T 3gqw_A 481 EQE 483 (576)
T ss_dssp TTS
T ss_pred HhC
Confidence 864
No 27
>3rix_A Luciferase, luciferin 4-monooxygenase; oxidoreductase, photoprotein, luminescence, aspulvinone, natural product extracts; HET: 923; 1.70A {Photinus pyralis} SCOP: e.23.1.1 PDB: 1ba3_A 1lci_A* 4e5d_A* 3ies_A* 3iep_A* 3ier_A* 4g36_A* 4g37_A* 3qya_A
Probab=99.44 E-value=1.5e-12 Score=144.68 Aligned_cols=135 Identities=16% Similarity=0.187 Sum_probs=69.3
Q ss_pred cCCCCceeEEEEccC---hHHHHHHHHHHhCCCCeecCcccCCCcceeecCCCCCC--CCCcceeeecCceEEEEEecCC
Q 007568 309 LWPNAKYVYSIMTGS---MQHYLKKLRHYAGDLPLVSADYGSTESWIGVNVDPSLP--PEDVTFAVIPTFSYFEFIPIHR 383 (598)
Q Consensus 309 lwP~l~~i~~~~~g~---~~~y~~~l~~~~g~~~i~~~~ygaSE~~i~~~~~~~~~--~~~~~~~l~~~~~~~EFip~~~ 383 (598)
-+++|+. +.+|| .....+++++.+|...++ +.||+||+...+...+..+ ++..+. ..| +.-.+.++++
T Consensus 305 ~l~~lr~---i~~gG~~l~~~~~~~~~~~~~~~~v~-~~YG~TE~~~~~~~~~~~~~~~~~vG~-~~~-~~~~~i~d~~- 377 (550)
T 3rix_A 305 DLSNLHE---IASGGAPLSKEVGEAVAKRFHLPGIR-QGYGLTETTSAILITPEGDDKPGAVGK-VVP-FFEAKVVDLD- 377 (550)
T ss_dssp CCTTCCE---EEECSSCCCHHHHHHHHHHTTCSCCE-EEEECGGGSSEEEECCTTCCCTTEEEE-ECT-TCEEEEECTT-
T ss_pred CcccccE---EEEecCCCCHHHHHHHHHHcCCCccc-cccCcCccccceecCCCCCCCCCCccc-ccC-CcEEEEEeCC-
Confidence 3578884 44444 566777888888644477 9999999754333222221 111121 223 3344555533
Q ss_pred cccCCCCCCCCCCCCccccCCCCCCCCeEEEEEcc---cCceec--------------cccCCEEEEccccCCCCEEEEE
Q 007568 384 RKQDCNSAIDDFIEDEPVPLSQVKLGQEYEIVLTS---FTGLYR--------------YRLGDVVEVAGFHKGTPKLNFV 446 (598)
Q Consensus 384 ~~~~~~~~~~~~~~~~~l~~~eve~G~~yeLVvTt---~~Gl~R--------------Yr~GDvv~v~g~~~~~P~i~f~ 446 (598)
+++. +.+|+.|||+|+. ..|+|. |+|||+++++. ...+.|+
T Consensus 378 -------------~~~~-----~~~g~~GEl~v~g~~v~~GY~~~~~~t~~~~~~~g~~~TGDl~~~~~----dG~l~~~ 435 (550)
T 3rix_A 378 -------------TGKT-----LGVNQRGELCVRGPMIMSGYVNNPEATNALIDKDGWLHSGDIAYWDE----DEHFFIV 435 (550)
T ss_dssp -------------TCCB-----CCTTCCEEEEEESTTSCSEETTCHHHHHHHBCTTSCEEEEEEEEECT----TCCEEEC
T ss_pred -------------CCcC-----CCCCCCeEEEEeCCCcchhhcCChhhhhhhcCCCCCeecCcEEEEeC----CceEEEE
Confidence 1333 4689999999965 366663 99999999985 7789999
Q ss_pred eecCceEeeceeecCHHHHHHHHHHH
Q 007568 447 CRRKLILTVNIDKNTEKDLQLVVDRG 472 (598)
Q Consensus 447 gR~~~~l~~~Gekv~e~~v~~av~~~ 472 (598)
||.+|+++++|++|++.+||++|.+.
T Consensus 436 GR~dd~ik~~G~~v~p~eIE~~l~~~ 461 (550)
T 3rix_A 436 DRLKSLIKYKGYQVAPAELESILLQH 461 (550)
T ss_dssp --------------------------
T ss_pred ecchheeEECCEEECHHHHHHHHHhC
Confidence 99999999999999999999999864
No 28
>1ry2_A Acetyl-coenzyme A synthetase 1, acyl-activating enzyme 1; AMP forming, related to firefly luciferase, ligase; HET: AMP; 2.30A {Saccharomyces cerevisiae} SCOP: e.23.1.1
Probab=99.43 E-value=2.2e-12 Score=147.06 Aligned_cols=229 Identities=12% Similarity=0.107 Sum_probs=121.3
Q ss_pred CCCCceeEEEEccC---hHHHHHHHHHHhC--CCCeecCcccCCCcce--eecCC-CC--CCCCCcceeeecCceEEEEE
Q 007568 310 WPNAKYVYSIMTGS---MQHYLKKLRHYAG--DLPLVSADYGSTESWI--GVNVD-PS--LPPEDVTFAVIPTFSYFEFI 379 (598)
Q Consensus 310 wP~l~~i~~~~~g~---~~~y~~~l~~~~g--~~~i~~~~ygaSE~~i--~~~~~-~~--~~~~~~~~~l~~~~~~~EFi 379 (598)
.++|++ +.+|| .....+.+.+.+| +++++ +.||+||+.. ..+.. .. ..++..+. ..++. -++.+
T Consensus 383 l~sLr~---i~~gGe~l~~~~~~~~~~~~g~~~~~i~-~~YG~TE~~~~~~~~~~~~~~~~~~gs~G~-p~~g~-~v~i~ 456 (663)
T 1ry2_A 383 LKSLRC---LGSVGEPIAAEVWEWYSEKIGKNEIPIV-DTYWQTESGSHLVTPLAGGVTPMKPGSASF-PFFGI-DAVVL 456 (663)
T ss_dssp CTTCCE---EEECSSCCCHHHHHHHHHTTSCSSSCEE-ECBCCTTTCSCSEECCTTTCCCCCTTCCCE-ECTTC-CEEEE
T ss_pred cCceEE---EEEEcCCCCHHHHHHHHHHhCCCCceEE-EeECCccccCeeeccCCCCCcccCCCcccc-CcCCC-eEEEE
Confidence 467884 45555 5556667777775 38999 9999999743 22211 01 11122222 22332 23444
Q ss_pred ecCCcccCCCCCCCCCCCCccccCCCCCC-CCeEEEEEccc-----Ccee----------------ccccCCEEEEcccc
Q 007568 380 PIHRRKQDCNSAIDDFIEDEPVPLSQVKL-GQEYEIVLTSF-----TGLY----------------RYRLGDVVEVAGFH 437 (598)
Q Consensus 380 p~~~~~~~~~~~~~~~~~~~~l~~~eve~-G~~yeLVvTt~-----~Gl~----------------RYr~GDvv~v~g~~ 437 (598)
+.+ +++.+ .. |+.|||+|+.. .|+| .|+|||+++++.
T Consensus 457 d~~--------------~g~~v-----~~~g~~Gel~i~g~~p~~~~gy~~~~~~~~~~~~~~~~g~y~TGDlg~~d~-- 515 (663)
T 1ry2_A 457 DPN--------------TGEEL-----NTSHAEGVLAVKAAWPSFARTIWKNHDRYLDTYLNPYPGYYFTGDGAAKDK-- 515 (663)
T ss_dssp CSS--------------STTCE-----ECSSCEEEEEESSCCTTSCCEETTCHHHHHHHHTSSSTTSEEEEEEEEECT--
T ss_pred cCC--------------CCCcC-----CCCCcceEEEEecCCCchhcccccChHHHHHhhhcCCCCEEEcCCEEEEcC--
Confidence 421 23333 35 88999999762 4554 299999999985
Q ss_pred CCCCEEEEEeecCceEeeceeecCHHHHHHHHHHHHhhhhccCCeeeeeEEeeccCC-CCceEEEEEEecCCCc-----c
Q 007568 438 KGTPKLNFVCRRKLILTVNIDKNTEKDLQLVVDRGSQLLNKTGAELVDFTSHADIVN-QPGHYIIYWEIKGDVE-----E 511 (598)
Q Consensus 438 ~~~P~i~f~gR~~~~l~~~Gekv~e~~v~~av~~~~~~l~~~g~~l~~f~~~~~~~~-~~~~Y~~~vE~~~~~~-----~ 511 (598)
...+.|+||.||+|+++|++|...+||++|.+. .+ +.+..++..... ....-+.||.+..+.. .
T Consensus 516 --dG~l~i~GR~dd~Ik~~G~rI~~~eIE~~l~~~------p~--V~ea~Vvg~~~~~~g~~~~a~Vv~~~~~~~~~~~~ 585 (663)
T 1ry2_A 516 --DGYIWILGRVDDVVNVSGHRLSTAEIEAAIIED------PI--VAECAVVGFNDDLTGQAVAAFVVLKNKSSWSTATD 585 (663)
T ss_dssp --TCCEEECSCTTSCBCSSSCCBCHHHHHHHHHSS------TT--EEEEEEECCCCCTTSCCCEEEEEEC----------
T ss_pred --CCCEEEEeecCCEEEECCEEcCHHHHHHHHHhC------CC--cceEEEEEEecCCCCeEEEEEEEEcCCCccccccc
Confidence 678999999999999999999999999999743 12 445554431111 1112345665543211 1
Q ss_pred ----chHHHHHHHHHhhcCCchhHhhhhcCCcCCeEEEEecc------chHHHHHHHHhcCCCCCCCCCCCcccCCHHHH
Q 007568 512 ----GVLNQCCHEMDVSFVDPGYVVSRRTNSIGPLELCIVKR------GAFRMILDYFVGNGAALSQFKTPRCTSNQVLV 581 (598)
Q Consensus 512 ----~~l~~~~~~ld~~l~n~~Y~~~R~~g~l~p~~v~~v~~------g~f~~~~~~~~~~G~~~~Q~K~Pr~~~~~~~~ 581 (598)
+..+++.+.+.+.| +.| ..|-+|.+|+. |-..+-.=..+..+. ..+++.+-.+.|++.+
T Consensus 586 ~~~~~l~~~l~~~l~~~L--~~~--------~~P~~i~~v~~lP~T~sGKi~R~~L~~~~~~~-~~~~~~~~~l~~p~~~ 654 (663)
T 1ry2_A 586 DELQDIKKHLVFTVRKDI--GPF--------AAPKLIILVDDLPKTRSGKIMRRILRKILAGE-SDQLGDVSTLSNPGIV 654 (663)
T ss_dssp --CCSHHHHHHHHHHHHT--CTT--------TSCSEEEECSCCCBCTTSCBCHHHHHHSCC--------------CCHHH
T ss_pred hhHHHHHHHHHHHHHHhC--CCC--------cCCeEEEEcCCCCCCCccCchHHHHHHHHcCC-CCCCCCcccccCHHHH
Confidence 12333434444443 222 34555666542 322221111112232 1267888899999999
Q ss_pred HHHhh
Q 007568 582 RILND 586 (598)
Q Consensus 582 ~~l~~ 586 (598)
+.+.+
T Consensus 655 ~~~~~ 659 (663)
T 1ry2_A 655 RHLID 659 (663)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 99875
No 29
>3o83_A Peptide arylation enzyme; ligase, adenylation of 2,3-dihydroxybenzoate and transfer to pantetheine cofactor of BASF; HET: IXN; 1.90A {Acinetobacter baumannii} SCOP: e.23.1.0 PDB: 3o82_A* 3o84_A* 3u16_A* 3u17_A*
Probab=99.42 E-value=2.2e-13 Score=151.44 Aligned_cols=133 Identities=14% Similarity=0.158 Sum_probs=71.5
Q ss_pred CCCCceeEEEEccC---hHHHHHHHHHHhCCCCeecCcccCCCcceeecCCCCCCC---CCcceeeecCceEEEEEecCC
Q 007568 310 WPNAKYVYSIMTGS---MQHYLKKLRHYAGDLPLVSADYGSTESWIGVNVDPSLPP---EDVTFAVIPTFSYFEFIPIHR 383 (598)
Q Consensus 310 wP~l~~i~~~~~g~---~~~y~~~l~~~~g~~~i~~~~ygaSE~~i~~~~~~~~~~---~~~~~~l~~~~~~~EFip~~~ 383 (598)
.++|+. +.+|| .....+++++.+ +++++ +.||+||+.+.......... ...+..+. .+.-++.++.
T Consensus 306 ~~~lr~---i~~gG~~l~~~~~~~~~~~~-~~~~~-~~YG~TE~~~~~~~~~~~~~~~~~~~G~p~~-~~~~~~i~d~-- 377 (544)
T 3o83_A 306 IQSLKL---LQVGGASFPESLARQVPEVL-NCKLQ-QVFGMAEGLVNYTRLDDSDEQIFTTQGRPIS-SDDEIKIVDE-- 377 (544)
T ss_dssp HTTCCE---EEEESSCCCHHHHTHHHHHH-CSEEE-EEEECTTSCEEECCTTSCHHHHHHCCCEESC-TTCEEEEECT--
T ss_pred CCcceE---EEEcCCCCCHHHHHHHHHHh-CCcEE-eeeccccccceeecCCCchhhccCCCceecC-CCcEEEEECC--
Confidence 457884 34444 556667788878 58999 99999998654432111100 01122222 2333444441
Q ss_pred cccCCCCCCCCCCCCccccCCCCCCCCeEEEEEcc---cCceec--------------cccCCEEEEccccCCCCEEEEE
Q 007568 384 RKQDCNSAIDDFIEDEPVPLSQVKLGQEYEIVLTS---FTGLYR--------------YRLGDVVEVAGFHKGTPKLNFV 446 (598)
Q Consensus 384 ~~~~~~~~~~~~~~~~~l~~~eve~G~~yeLVvTt---~~Gl~R--------------Yr~GDvv~v~g~~~~~P~i~f~ 446 (598)
+++. +.+|+.|||+|+. ..|+|. |+|||+++++. ...+.|+
T Consensus 378 -------------~~~~-----~~~g~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~g~~~TGDlg~~~~----dG~l~~~ 435 (544)
T 3o83_A 378 -------------QYRE-----VPEGEIGMLATRGPYTFCGYYQSPEHNSQVFDEDNYYYSGDLVQRTP----DGNLRVV 435 (544)
T ss_dssp -------------TSCB-----CCTTCCEEEEEECTTSCSCCTTCHHHHHHHBCTTCCEEEEEEEEECT----TSCEEEE
T ss_pred -------------CCCC-----CCCCCeeEEEEecCCcchhhcCChhhhhhhCCCCCCeEcCCEEEEcC----CCCEEEE
Confidence 2333 5689999999965 367763 99999999985 6899999
Q ss_pred eecCceEeeceeecCHHHHHHHHHHH
Q 007568 447 CRRKLILTVNIDKNTEKDLQLVVDRG 472 (598)
Q Consensus 447 gR~~~~l~~~Gekv~e~~v~~av~~~ 472 (598)
||.||+++++|++|++.+||++|.+.
T Consensus 436 GR~dd~ik~~G~~v~p~eIE~~l~~~ 461 (544)
T 3o83_A 436 GRIKDQINRGGEKIASEEIEKLILLH 461 (544)
T ss_dssp EEEC----------------------
T ss_pred eecCCEEEeCCEEECHHHHHHHHHhC
Confidence 99999999999999999999999864
No 30
>3ite_A SIDN siderophore synthetase; ligase, non-ribosomal peptide synthesis, NRPS, sidna3, fungal, endophyte; HET: MSE; 2.00A {Neotyphodium lolii}
Probab=99.42 E-value=4.7e-13 Score=149.01 Aligned_cols=134 Identities=22% Similarity=0.275 Sum_probs=68.0
Q ss_pred cCCCCceeEEEEccC---hHHHHHHHHHHhCCCCeecCcccCCCcceeec---CCCCCCCCCcceeeecCceEEEEEecC
Q 007568 309 LWPNAKYVYSIMTGS---MQHYLKKLRHYAGDLPLVSADYGSTESWIGVN---VDPSLPPEDVTFAVIPTFSYFEFIPIH 382 (598)
Q Consensus 309 lwP~l~~i~~~~~g~---~~~y~~~l~~~~g~~~i~~~~ygaSE~~i~~~---~~~~~~~~~~~~~l~~~~~~~EFip~~ 382 (598)
-.++|+. +.+|| .....+++++.+ +++++ +.||+||+.+... ..+.......+. ..++ .-...++.+
T Consensus 292 ~~~~lr~---~~~gG~~l~~~~~~~~~~~~-~~~~~-~~YG~TE~~~~~~~~~~~~~~~~~~~G~-p~~~-~~~~i~d~~ 364 (562)
T 3ite_A 292 DAPHLVY---LGVGGEKMTPRTQQIWSSSD-RVALV-NVYGPTEVTIGCSAGRILPDSDTRCIGH-PLGD-SVAHVLAPG 364 (562)
T ss_dssp GSTTCCE---EEEESSCCCHHHHHHHTTCS-SCEEE-EEECCGGGCSCSEEEECCTTSCTTEEEE-ECTT-CEEEEECTT
T ss_pred ccCceEE---EEEecCCCCHHHHHHHhhCC-CcEEE-EeeccchheeeeeeeeecCCCCCccccc-cCCC-CeEEEEeCC
Confidence 3567884 44444 444555565544 58899 9999999743221 112211111111 2222 333444422
Q ss_pred CcccCCCCCCCCCCCCccccCCCCCCCCeEEEEEcc---cCcee---------------ccccCCEEEEccccCCCCEEE
Q 007568 383 RRKQDCNSAIDDFIEDEPVPLSQVKLGQEYEIVLTS---FTGLY---------------RYRLGDVVEVAGFHKGTPKLN 444 (598)
Q Consensus 383 ~~~~~~~~~~~~~~~~~~l~~~eve~G~~yeLVvTt---~~Gl~---------------RYr~GDvv~v~g~~~~~P~i~ 444 (598)
++.. +.+|+.|||+|.. ..|+| .|+|||+++++. ...+.
T Consensus 365 --------------~~~~-----~~~g~~GEl~v~g~~v~~GY~~~p~~t~~~~~~g~~w~~TGDlg~~d~----dG~l~ 421 (562)
T 3ite_A 365 --------------SNEH-----VKKGMAGELVIEGSLVANGYLNRPDAKGFCDINGRKMYRTGDIVRMDA----DSSIL 421 (562)
T ss_dssp --------------SSCB-----CCTTSCEEEEEESTTSCCEESSCTTCCSEEEETTEEEEEEEEEEEECT----TSCEE
T ss_pred --------------CCCC-----CCCCCceEEEEeccccchhhCCCccccccccCCCCEEEecCCEEEEcC----CCeEE
Confidence 1222 5689999999954 46776 499999999985 78999
Q ss_pred EEeecCceEeeceeecCHHHHHHHHHHH
Q 007568 445 FVCRRKLILTVNIDKNTEKDLQLVVDRG 472 (598)
Q Consensus 445 f~gR~~~~l~~~Gekv~e~~v~~av~~~ 472 (598)
|+||.||+++++|++|++.|||++|.+.
T Consensus 422 ~~GR~dd~Ik~~G~~v~p~eIE~~l~~~ 449 (562)
T 3ite_A 422 FLGRKDEQVKVRGQRLELGEVSEVIRSL 449 (562)
T ss_dssp EEEEC-----------------------
T ss_pred EEccccCEEeECcEEECHHHHHHHHHhc
Confidence 9999999999999999999999999865
No 31
>3ipl_A 2-succinylbenzoate--COA ligase; structural genomics, acyl-protein synthetase, PSI-2, protein structure initiative; 2.30A {Staphylococcus aureus subsp}
Probab=99.42 E-value=4e-12 Score=139.39 Aligned_cols=124 Identities=16% Similarity=0.235 Sum_probs=82.6
Q ss_pred CCceeEEEEccC---hHHHHHHHHHHhCCCCeecCcccCCCcce-eecCCCC---CCCCCcceeeecCceEEEEEecCCc
Q 007568 312 NAKYVYSIMTGS---MQHYLKKLRHYAGDLPLVSADYGSTESWI-GVNVDPS---LPPEDVTFAVIPTFSYFEFIPIHRR 384 (598)
Q Consensus 312 ~l~~i~~~~~g~---~~~y~~~l~~~~g~~~i~~~~ygaSE~~i-~~~~~~~---~~~~~~~~~l~~~~~~~EFip~~~~ 384 (598)
+|+. +.+|| .....+++++ + +++++ +.||+||+.. .+...+. ..+...+. ..++ .-++.++.
T Consensus 275 ~lr~---i~~gG~~l~~~~~~~~~~-~-~~~~~-~~YG~TE~~~~~~~~~~~~~~~~~~~~G~-p~~~-~~~~i~d~--- 343 (501)
T 3ipl_A 275 NLQK---ILLGGAKLSATMIETALQ-Y-NLPIY-NSFGMTETCSQFLTATPEMLHARPDTVGM-PSAN-VDVKIKNP--- 343 (501)
T ss_dssp TCCE---EEECSSCCCHHHHHHHHH-T-TCCEE-EEEEEGGGTEEEEEECHHHHHHCTTCCBE-ECTT-CEEEEESC---
T ss_pred cccE---EEEeCCCCCHHHHHHHHH-h-CCCEe-ccccccccccceeecCccccccCCCCCCC-CCCC-cEEEEecC---
Confidence 6784 44444 4455555655 4 68999 9999999643 2221111 01111222 1222 22222221
Q ss_pred ccCCCCCCCCCCCCccccCCCCCCCCeEEEEEcc---cCceec------------cccCCEEEEccccCCCCEEEEEeec
Q 007568 385 KQDCNSAIDDFIEDEPVPLSQVKLGQEYEIVLTS---FTGLYR------------YRLGDVVEVAGFHKGTPKLNFVCRR 449 (598)
Q Consensus 385 ~~~~~~~~~~~~~~~~l~~~eve~G~~yeLVvTt---~~Gl~R------------Yr~GDvv~v~g~~~~~P~i~f~gR~ 449 (598)
.+|+.|||+|.. ..|+|. |+|||+++++. ...+.|+||.
T Consensus 344 ----------------------~~~~~GEl~v~g~~~~~gY~~~~~~t~~~~~g~~~TGDl~~~~~----~G~l~~~GR~ 397 (501)
T 3ipl_A 344 ----------------------NKEGHGELMIKGANVMNGYLYPTDLTGTFENGYFNTGDIAEIDH----EGYVMIYDRR 397 (501)
T ss_dssp ----------------------CSSCCEEEEEESTTSCSCCSBSTTCCCSEETTEEEEEEEEEECT----TSCEEEEEEC
T ss_pred ----------------------CCCCccEEEEeccchhhhhCcChhhcchhcCCceecCCEEEEcC----CCeEEEEccc
Confidence 147789999955 467775 99999999975 6799999999
Q ss_pred CceEeeceeecCHHHHHHHHHHH
Q 007568 450 KLILTVNIDKNTEKDLQLVVDRG 472 (598)
Q Consensus 450 ~~~l~~~Gekv~e~~v~~av~~~ 472 (598)
+|+++++|++|++.+||+++.+.
T Consensus 398 dd~ik~~G~~v~p~eiE~~l~~~ 420 (501)
T 3ipl_A 398 KDLIISGGENIYPYQIETVAKQF 420 (501)
T ss_dssp CCCEECSSCEECHHHHHHHHTTS
T ss_pred cceEEECCEEECHHHHHHHHHhC
Confidence 99999999999999999988753
No 32
>1amu_A GRSA, gramicidin synthetase 1; peptide synthetase, adenylate forming; HET: PHE AMP; 1.90A {Brevibacillus brevis} SCOP: e.23.1.1
Probab=99.41 E-value=4.3e-12 Score=141.81 Aligned_cols=63 Identities=11% Similarity=0.251 Sum_probs=54.8
Q ss_pred CCCCCeEEEEEcc---cCcee--------------------ccccCCEEEEccccCCCCEEEEEeecCceEeeceeecCH
Q 007568 406 VKLGQEYEIVLTS---FTGLY--------------------RYRLGDVVEVAGFHKGTPKLNFVCRRKLILTVNIDKNTE 462 (598)
Q Consensus 406 ve~G~~yeLVvTt---~~Gl~--------------------RYr~GDvv~v~g~~~~~P~i~f~gR~~~~l~~~Gekv~e 462 (598)
+.+|+.|||+|+. ..||| .|+|||+++++. ...+.|+||.||+++++|++|++
T Consensus 367 ~~~g~~GEl~v~g~~v~~GY~~~pe~t~~~f~~~~~~~g~~w~~TGDlg~~d~----dG~l~i~GR~~d~Ik~~G~~V~p 442 (563)
T 1amu_A 367 KSVGEAGELCIGGEGLARGYWKRPELTSQKFVDNPFVPGEKLYKTGDQARWLS----DGNIEYLGRIDNQVKIRGHRVEL 442 (563)
T ss_dssp CCTTCEEEEEEEETTCCCEETTCHHHHHHHEEECSSSTTSEEEEEEEEEEECT----TSCEEEEEEGGGEEEETTEEEEH
T ss_pred CCCCCcEEEEEechhhChhhCCCchhhhhhcccCCCCCCCEEEecCCEEEEcC----CCeEEEeccccCEEEECCEEeCH
Confidence 4589999999965 35665 599999999985 67899999999999999999999
Q ss_pred HHHHHHHHHH
Q 007568 463 KDLQLVVDRG 472 (598)
Q Consensus 463 ~~v~~av~~~ 472 (598)
.+||++|.+.
T Consensus 443 ~eIE~~l~~~ 452 (563)
T 1amu_A 443 EEVESILLKH 452 (563)
T ss_dssp HHHHHHHTTS
T ss_pred HHHHHHHHhC
Confidence 9999998753
No 33
>4gr5_A Non-ribosomal peptide synthetase; MBTH-like domain, adenylation domain, ligase, rossmann fold, binding; HET: APC TLA; 1.92A {Streptomyces lydicus} PDB: 4gr4_A
Probab=99.36 E-value=3.3e-12 Score=142.67 Aligned_cols=133 Identities=17% Similarity=0.168 Sum_probs=68.2
Q ss_pred CCCCceeEEEEccC---hHHHHHHHHHHhCCCCeecCcccCCCcce-ee-c-CCCCCCC---CCcceeeecCceEEEEEe
Q 007568 310 WPNAKYVYSIMTGS---MQHYLKKLRHYAGDLPLVSADYGSTESWI-GV-N-VDPSLPP---EDVTFAVIPTFSYFEFIP 380 (598)
Q Consensus 310 wP~l~~i~~~~~g~---~~~y~~~l~~~~g~~~i~~~~ygaSE~~i-~~-~-~~~~~~~---~~~~~~l~~~~~~~EFip 380 (598)
+++|++ +++|| ......++.+.+++++++ +.||+||+.. .. . ....... ...+. ..++ .-+..++
T Consensus 325 ~~~lr~---~~~gG~~l~~~~~~~~~~~~~~~~l~-~~YG~TE~~~~~~~~~~~~~~~~~~~~~iG~-p~~~-~~v~i~d 398 (570)
T 4gr5_A 325 FEGVRY---AITGGEPASVPHVAKARRDHPALRLG-NGYGPAESMGFTTHHAVVAGDLSGTALPIGV-PLAG-KRAYVLD 398 (570)
T ss_dssp GTTCSE---EEEESSCCCHHHHHHHHHHCTTCEEE-EEECCGGGCSCSEEEECCGGGTTSSSCCCBE-ECTT-EEEEEEC
T ss_pred CCCceE---EEEecccCCHHHHHHHHHhCCCcEEE-EeechhhheeeeeeeeecccccCCCccccce-eeCC-CEEEEEC
Confidence 567884 34444 445666777778789999 9999999743 21 1 1111000 01122 2223 3334443
Q ss_pred cCCcccCCCCCCCCCCCCccccCCCCCCCCeEEEEEcc---cCceec----------------------cccCCEEEEcc
Q 007568 381 IHRRKQDCNSAIDDFIEDEPVPLSQVKLGQEYEIVLTS---FTGLYR----------------------YRLGDVVEVAG 435 (598)
Q Consensus 381 ~~~~~~~~~~~~~~~~~~~~l~~~eve~G~~yeLVvTt---~~Gl~R----------------------Yr~GDvv~v~g 435 (598)
. +++. +.+|+.|||+|.. ..|||+ |||||+++++.
T Consensus 399 ~---------------~~~~-----~~~G~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~~~~~~~~~~w~~TGDlg~~d~ 458 (570)
T 4gr5_A 399 D---------------DLKP-----AANGALGELYVAGAGLAHGYVSRPALTAERFVADPFAGPGGERMYRTGDLARRRA 458 (570)
T ss_dssp T---------------TSCB-----CCTTCEEEEEEEETTCCCEETTCHHHHHHHEEECTTCCSSCCEEEEEEEEEEECT
T ss_pred C---------------CCCC-----CCCCCcEEEEEeecccchhcCCCchhhhcccccCCCCCCCCCEEEeCCCeEEECC
Confidence 1 1333 5689999999954 466663 99999999985
Q ss_pred ccCCCCEEEEEeecCceEeeceeecCHHHHHHHHHHH
Q 007568 436 FHKGTPKLNFVCRRKLILTVNIDKNTEKDLQLVVDRG 472 (598)
Q Consensus 436 ~~~~~P~i~f~gR~~~~l~~~Gekv~e~~v~~av~~~ 472 (598)
...+.|+||.||+++++|++|++.+||++|.+.
T Consensus 459 ----dG~l~~~GR~~d~Ik~~G~~v~p~eIE~~l~~~ 491 (570)
T 4gr5_A 459 ----DGVLEYVGRADDQVKIRGFRVEPGEVEARLVGH 491 (570)
T ss_dssp ----TSCEEEEEC------------------------
T ss_pred ----CCeEEEEcccCCEEEECcEEeCHHHHHHHHhcC
Confidence 678999999999999999999999999999864
No 34
>4dg8_A PA1221; ANL superfamily, adenylation domain, peptidyl carrier protei ribosomal peptide synthetase, NRPS, valine adenylation, LIG; HET: AMP; 2.15A {Pseudomonas aeruginosa} PDB: 4dg9_A*
Probab=99.36 E-value=1.8e-11 Score=138.53 Aligned_cols=134 Identities=19% Similarity=0.177 Sum_probs=89.0
Q ss_pred CCCCceeEEEEccC---hHHHHHHHHHHhCCCCeecCcccCCCcceeec---CCCC---CCCCCcceeeecCceEEEEEe
Q 007568 310 WPNAKYVYSIMTGS---MQHYLKKLRHYAGDLPLVSADYGSTESWIGVN---VDPS---LPPEDVTFAVIPTFSYFEFIP 380 (598)
Q Consensus 310 wP~l~~i~~~~~g~---~~~y~~~l~~~~g~~~i~~~~ygaSE~~i~~~---~~~~---~~~~~~~~~l~~~~~~~EFip 380 (598)
.++|+. +++|| ......++.+.+++++++ +.||+||+.+... ..+. ......|. ..++ .-+..++
T Consensus 275 l~~lr~---v~~gGe~l~~~~~~~~~~~~~~~~l~-n~YG~TE~~~~~~~~~~~~~~~~~~~~~iG~-p~~~-~~~~i~d 348 (620)
T 4dg8_A 275 LGGLRQ---LLTGGDILSVPHVRRALLRHPRLHLV-NGYGPTENTTFTCCHVVTDDDLEEDDIPIGK-AIAG-TAVLLLD 348 (620)
T ss_dssp GTTCSE---EEEESSCCCHHHHHHHHHHCTTCEEE-EEECCGGGCSCSEEEECCTGGGGSSSCCCBE-ECTT-EEEEEEC
T ss_pred CCCccE---EEEEeCcCCHHHHHHHHHhCCCeEEE-eeEchhhhhhheEEEeccccccCCCCCCcee-cccC-cEEEEEC
Confidence 467884 44444 334555565667789999 9999999753221 1111 00111122 2233 3334444
Q ss_pred cCCcccCCCCCCCCCCCCccccCCCCCCCCeEEEEEcc---cCceec---------------------cccCCEEEEccc
Q 007568 381 IHRRKQDCNSAIDDFIEDEPVPLSQVKLGQEYEIVLTS---FTGLYR---------------------YRLGDVVEVAGF 436 (598)
Q Consensus 381 ~~~~~~~~~~~~~~~~~~~~l~~~eve~G~~yeLVvTt---~~Gl~R---------------------Yr~GDvv~v~g~ 436 (598)
.+ +..+ +.+|+.|||+|.. ..|||. |||||+++...
T Consensus 349 ~~---------------~~~~----~~~g~~GEl~i~G~~v~~GY~~~p~~t~~~f~~~p~~~~~~~~yrTGDl~~~~~- 408 (620)
T 4dg8_A 349 EH---------------GQEI----AEPDRAGEIVAFGAGLAQGYRNDAARTRASFVELPYRGRLLRAYRTGDRARYDE- 408 (620)
T ss_dssp TT---------------SCBC----CSSSCCEEEEEEETTCCSEETTCHHHHHHHEEEEEETTEEEEEEEEEEEEEECT-
T ss_pred cc---------------CCCC----CCCCCceEEEEeccccccccCCChhhhhhhhccCCCCCCCceEEeCCCEEEECC-
Confidence 22 2221 3579999999943 356652 99999999985
Q ss_pred cCCCCEEEEEeecCceEeeceeecCHHHHHHHHHHH
Q 007568 437 HKGTPKLNFVCRRKLILTVNIDKNTEKDLQLVVDRG 472 (598)
Q Consensus 437 ~~~~P~i~f~gR~~~~l~~~Gekv~e~~v~~av~~~ 472 (598)
...+.|+||.|++++++|++|.+.|||.+|.+.
T Consensus 409 ---dG~l~~~GR~dd~Ik~~G~ri~~~eIE~~l~~~ 441 (620)
T 4dg8_A 409 ---QGRLRFIGRGDGQVKLNGYRLDLPALEQRFRRQ 441 (620)
T ss_dssp ---TSCEEEEECSSSEEEETTEEEEHHHHHHHHHTS
T ss_pred ---CCeEEEEccCCCEEEECCEEcCHHHHHHHHHhC
Confidence 678999999999999999999999999999863
No 35
>4gs5_A Acyl-COA synthetase (AMP-forming)/AMP-acid ligase protein; structural genomics, PSI-biology; 2.02A {Dyadobacter fermentans}
Probab=99.35 E-value=1.1e-12 Score=138.53 Aligned_cols=124 Identities=15% Similarity=0.177 Sum_probs=77.9
Q ss_pred CCCCceeEEEEccC---hHHHHHHHHHHhCCCCeecCcccCCCcceeecCCCCCCCCCcceeeecCceEEEEEecCCccc
Q 007568 310 WPNAKYVYSIMTGS---MQHYLKKLRHYAGDLPLVSADYGSTESWIGVNVDPSLPPEDVTFAVIPTFSYFEFIPIHRRKQ 386 (598)
Q Consensus 310 wP~l~~i~~~~~g~---~~~y~~~l~~~~g~~~i~~~~ygaSE~~i~~~~~~~~~~~~~~~~l~~~~~~~EFip~~~~~~ 386 (598)
.++|+. +.+|| .....+++++ + +++++ +.||+||+...+...+...+. . .... ++..
T Consensus 147 l~~lr~---v~~gG~~l~~~~~~~~~~-~-~~~~~-~~YG~TEt~~~~~~~~~~~~~-~------g~~~---~~~p---- 206 (358)
T 4gs5_A 147 VDRLGK---VLLGGAPVNHALAMQISD-L-AMPVY-QSYGMTETVSHVALKALNGPE-A------SELY---VFLP---- 206 (358)
T ss_dssp GGGGCS---EEECSSCCCHHHHHHHHT-C-SSCEE-EEEECGGGSSEEEEEECSSTT-C------CSCE---EECT----
T ss_pred CCcceE---EEEcccCCCchheecccc-c-CceEE-eccccccccceeecccccccc-c------ceee---ccCC----
Confidence 356774 34444 4445555555 3 58999 999999975443322211111 0 1111 1211
Q ss_pred CCCCCCCCCCCCccccCCCCCCCCeEEEEEccc-CceeccccCCEEEEccccCCCCEEEEEeecCceEeeceeecCHHHH
Q 007568 387 DCNSAIDDFIEDEPVPLSQVKLGQEYEIVLTSF-TGLYRYRLGDVVEVAGFHKGTPKLNFVCRRKLILTVNIDKNTEKDL 465 (598)
Q Consensus 387 ~~~~~~~~~~~~~~l~~~eve~G~~yeLVvTt~-~Gl~RYr~GDvv~v~g~~~~~P~i~f~gR~~~~l~~~Gekv~e~~v 465 (598)
+ .++..++.+|+++... ..-..|+|||+++++. . .+.|+||.||+++++|++|++.+|
T Consensus 207 -----------g-----v~~~~~~~Gel~~~g~~~~~g~~~TGDlg~~d~----~-g~~~~GR~dd~Ik~~G~~v~p~eI 265 (358)
T 4gs5_A 207 -----------G-----IQYGVDERGCLHISGAVTNGQTVQTNDLVEIHG----N-AFQWIGRADNVINSGGVKIVLDQI 265 (358)
T ss_dssp -----------T-----CEEEECTTSEEEEESGGGTTCCEEEEEEEEECS----S-EEEEEEEGGGEEEETTEEEEHHHH
T ss_pred -----------C-----eEEEecCcCceEEecccccCcceecCCcccccc----C-ceEEcccccCeEEECCEEECHHHH
Confidence 1 1233466779988542 1112489999999985 2 378999999999999999999999
Q ss_pred HHHHHHHHh
Q 007568 466 QLVVDRGSQ 474 (598)
Q Consensus 466 ~~av~~~~~ 474 (598)
|++|.....
T Consensus 266 E~~l~~~~~ 274 (358)
T 4gs5_A 266 DQRIAAVFH 274 (358)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHhcc
Confidence 999876543
No 36
>3tsy_A Fusion protein 4-coumarate--COA ligase 1, resvera synthase; transferase; 3.10A {Arabidospis thaliana}
Probab=99.34 E-value=2.6e-12 Score=152.54 Aligned_cols=134 Identities=13% Similarity=0.153 Sum_probs=74.0
Q ss_pred CCCCceeEEEEccC---hHHHHHHHHHHhCCCCeecCcccCCCcceee--cC--CCC---CCCCCcceeeecCceEEEEE
Q 007568 310 WPNAKYVYSIMTGS---MQHYLKKLRHYAGDLPLVSADYGSTESWIGV--NV--DPS---LPPEDVTFAVIPTFSYFEFI 379 (598)
Q Consensus 310 wP~l~~i~~~~~g~---~~~y~~~l~~~~g~~~i~~~~ygaSE~~i~~--~~--~~~---~~~~~~~~~l~~~~~~~EFi 379 (598)
.++|++ +.+|| .....+++++.+++++++ +.||+||+...+ .. ... ...+..+. ..++ .-++.+
T Consensus 343 l~~lr~---~~~gg~~l~~~~~~~~~~~~~~~~l~-~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~G~-p~~~-~~~~i~ 416 (979)
T 3tsy_A 343 LSSIRV---VKSGAAPLGKELEDAVNAKFPNAKLG-QGYGMTEAGPVLAMSLGFAKEPFPVKSGACGT-VVRN-AEMKIV 416 (979)
T ss_dssp CTTCCE---EEESSCCCCSSHHHHHHHHCTTCEEE-ECEECGGGCSEEEECGGGSSSCCCCCTTCCCE-ECSS-CEEEEE
T ss_pred ccceEE---EEEcCCCCCHHHHHHHHHHCCCCeEE-eeechhhhhHHHHhCCCCCCCccccCCCCcCc-ccCC-cEEEEE
Confidence 567884 45555 456667788888889999 999999975322 11 011 01111222 2233 334555
Q ss_pred ecCCcccCCCCCCCCCCCCccccCCCCCCCCeEEEEEcc---cCceec--------------cccCCEEEEccccCCCCE
Q 007568 380 PIHRRKQDCNSAIDDFIEDEPVPLSQVKLGQEYEIVLTS---FTGLYR--------------YRLGDVVEVAGFHKGTPK 442 (598)
Q Consensus 380 p~~~~~~~~~~~~~~~~~~~~l~~~eve~G~~yeLVvTt---~~Gl~R--------------Yr~GDvv~v~g~~~~~P~ 442 (598)
+++ +++. +.+|+.|||+|+. ..|+|. |+|||+++++. ...
T Consensus 417 d~~--------------~~~~-----~~~g~~GEl~i~g~~v~~GY~~~p~~t~~~f~~~g~~~TGDl~~~~~----dG~ 473 (979)
T 3tsy_A 417 DPD--------------TGDS-----LSRNQPGEICIRGHQIMKGYLNNPAATAETIDKDGWLHTGDIGLIDD----DDE 473 (979)
T ss_dssp CTT--------------SCCB-----CCTTCCEEEEEESTTSCSEETTCHHHHHHHBCTTSCEEEEEEEEECT----TSC
T ss_pred eCC--------------CCCC-----CCCCCccEEEEECCCccccccCChhhhhhhccCCCcEEcCCEEEEcC----Cce
Confidence 533 1333 4589999999964 467764 99999999985 678
Q ss_pred EEEEeecCceEeeceeecCHHHHHHHHHHH
Q 007568 443 LNFVCRRKLILTVNIDKNTEKDLQLVVDRG 472 (598)
Q Consensus 443 i~f~gR~~~~l~~~Gekv~e~~v~~av~~~ 472 (598)
+.|+||.||+++++|++|.+.+||.+|.+.
T Consensus 474 l~~~GR~dd~ik~~G~~v~~~eIE~~l~~~ 503 (979)
T 3tsy_A 474 LFIVDRLKELIKYKGFQVAPAELEALLIGH 503 (979)
T ss_dssp EEEEEESCC---------------------
T ss_pred EEEecCCCCEEEECCEEECHHHHHHHHHhC
Confidence 999999999999999999999999999864
No 37
>1v25_A Long-chain-fatty-acid-COA synthetase; ligase, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.30A {Thermus thermophilus} SCOP: e.23.1.1 PDB: 1ult_A* 1v26_A*
Probab=99.31 E-value=6.8e-12 Score=139.29 Aligned_cols=133 Identities=17% Similarity=0.166 Sum_probs=83.8
Q ss_pred CCCCceeEEEEccC---hHHHHHHHHHHhCCCCeecCcccCCCcce-eecCCCCC-----C-------CCCcceeeecCc
Q 007568 310 WPNAKYVYSIMTGS---MQHYLKKLRHYAGDLPLVSADYGSTESWI-GVNVDPSL-----P-------PEDVTFAVIPTF 373 (598)
Q Consensus 310 wP~l~~i~~~~~g~---~~~y~~~l~~~~g~~~i~~~~ygaSE~~i-~~~~~~~~-----~-------~~~~~~~l~~~~ 373 (598)
.++|+. +++|| ....++++ +.+ +++++ +.||+||+.. .....+.. + ....+. ..|+
T Consensus 292 l~~lr~---i~~gG~~l~~~~~~~~-~~~-g~~~~-~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~-p~~~- 363 (541)
T 1v25_A 292 LKTLRR---LVVGGSAAPRSLIARF-ERM-GVEVR-QGYGLTETSPVVVQNFVKSHLESLSEEEKLTLKAKTGL-PIPL- 363 (541)
T ss_dssp CSSCCE---EEECSSCCCHHHHHHH-HHT-TCEEE-EEEECGGGSSEEEECCCCGGGTTSCHHHHHHHHTSCBE-ECTT-
T ss_pred chhccE---EEECCCCCCHHHHHHH-HHh-CCcee-ecccccccccceecccccccccccCccccccccCCCCC-cCCC-
Confidence 367884 44454 45556667 446 68999 9999999753 22211110 0 011122 2223
Q ss_pred eEEEEEecCCcccCCCCCCCCCCCCccccCCCCCCCCeEEEEEcc---cCceec--------------cccCCEEEEccc
Q 007568 374 SYFEFIPIHRRKQDCNSAIDDFIEDEPVPLSQVKLGQEYEIVLTS---FTGLYR--------------YRLGDVVEVAGF 436 (598)
Q Consensus 374 ~~~EFip~~~~~~~~~~~~~~~~~~~~l~~~eve~G~~yeLVvTt---~~Gl~R--------------Yr~GDvv~v~g~ 436 (598)
.-++.++.+ ++.++ ...|+.|||+|+. ..|||. |+|||+++++.
T Consensus 364 ~~~~i~d~~---------------g~~~~---~~~~~~GEl~v~g~~v~~GY~~~p~~t~~~f~~~g~~~TGDlg~~d~- 424 (541)
T 1v25_A 364 VRLRVADEE---------------GRPVP---KDGKALGEVQLKGPWITGGYYGNEEATRSALTPDGFFRTGDIAVWDE- 424 (541)
T ss_dssp CEEEEECTT---------------SCBCC---SSSCCCEEEEEESTTSBSSCBTCHHHHHTTBCTTSCEEEEEEEEECT-
T ss_pred cEEEEECCC---------------CCCCC---CCCCcceEEEEeCcchhccccCChhhhhhhccCCCCeEcCCEEEEcC-
Confidence 233444422 33322 0123689999965 467773 99999999985
Q ss_pred cCCCCEEEEEeecCceEeeceeecCHHHHHHHHHHH
Q 007568 437 HKGTPKLNFVCRRKLILTVNIDKNTEKDLQLVVDRG 472 (598)
Q Consensus 437 ~~~~P~i~f~gR~~~~l~~~Gekv~e~~v~~av~~~ 472 (598)
...+.|+||.+|+++++|++|++.+||++|.+.
T Consensus 425 ---dG~l~~~GR~~d~ik~~G~~v~p~eIE~~l~~~ 457 (541)
T 1v25_A 425 ---EGYVEIKDRLKDLIKSGGEWISSVDLENALMGH 457 (541)
T ss_dssp ---TCCEEEEEESSCEEEETTEEEEHHHHHCC----
T ss_pred ---CceEEEeecccceeeeCCEEECHHHHHHHHHhC
Confidence 678999999999999999999999999999864
No 38
>2vsq_A Surfactin synthetase subunit 3; ligase, peptidyl carrier protein, ligase phosphoprotein, TER module, phosphopantetheine; 2.60A {Bacillus subtilis}
Probab=99.25 E-value=1.9e-10 Score=140.52 Aligned_cols=132 Identities=15% Similarity=0.178 Sum_probs=89.2
Q ss_pred CCCceeEEEEccC---hHHHHHHHHHHhCCCCeecCcccCCCcceeec---CCC--C-CCCCCcceeeecCceEEEEEec
Q 007568 311 PNAKYVYSIMTGS---MQHYLKKLRHYAGDLPLVSADYGSTESWIGVN---VDP--S-LPPEDVTFAVIPTFSYFEFIPI 381 (598)
Q Consensus 311 P~l~~i~~~~~g~---~~~y~~~l~~~~g~~~i~~~~ygaSE~~i~~~---~~~--~-~~~~~~~~~l~~~~~~~EFip~ 381 (598)
++|+. ++.|| .....+++.+.+++++++ +.||.||+.+... ... . ......|. ..++..+ ..++.
T Consensus 720 ~~lr~---~~~gGe~l~~~~~~~~~~~~~~~~l~-n~YG~TE~~~~~~~~~~~~~~~~~~~~~iG~-p~~~~~~-~i~d~ 793 (1304)
T 2vsq_A 720 KGLRC---ILFGGERASVPHVRKALRIMGPGKLI-NCYGPTEGTVFATAHVVHDLPDSISSLPIGK-PISNASV-YILNE 793 (1304)
T ss_dssp HTCSE---EEEESSCCCHHHHHHHHHHHCTTCEE-EEECCGGGSSCSEEEECCCCCSSCSSCCCBE-ECTTEEE-EEECT
T ss_pred CCccE---EEEecCCCCHHHHHHHHHhCCCCEEE-EeEChhHHhHHheeeeccCccccCCCCCCce-eeCCCEE-EEECC
Confidence 56784 44444 445666677778778999 9999999854221 111 0 00001122 2334322 22321
Q ss_pred CCcccCCCCCCCCCCCCccccCCCCCCCCeEEEEEcc---cCcee--------------------ccccCCEEEEccccC
Q 007568 382 HRRKQDCNSAIDDFIEDEPVPLSQVKLGQEYEIVLTS---FTGLY--------------------RYRLGDVVEVAGFHK 438 (598)
Q Consensus 382 ~~~~~~~~~~~~~~~~~~~l~~~eve~G~~yeLVvTt---~~Gl~--------------------RYr~GDvv~v~g~~~ 438 (598)
+.++ +..|+.|||+|.. ..||| .|||||+++...
T Consensus 794 ---------------~~~~-----~p~G~~GEl~i~G~~v~~GY~~~p~~T~~~f~~~p~~~g~~~yrTGDl~~~~~--- 850 (1304)
T 2vsq_A 794 ---------------QSQL-----QPFGAVGELCISGMGVSKGYVNRADLTKEKFIENPFKPGETLYRTGDLARWLP--- 850 (1304)
T ss_dssp ---------------TSCB-----CCTTCCEEEEEEETTCCCCBTTCHHHHHHHEEECTTSTTCEEEEEEEEEEECT---
T ss_pred ---------------CcCC-----CCCCCceEEEEeccccCccccCCcccchhhhccCCCCCCCeeEecCCeEEEcC---
Confidence 2333 4589999999965 35554 499999999985
Q ss_pred CCCEEEEEeecCceEeeceeecCHHHHHHHHHHH
Q 007568 439 GTPKLNFVCRRKLILTVNIDKNTEKDLQLVVDRG 472 (598)
Q Consensus 439 ~~P~i~f~gR~~~~l~~~Gekv~e~~v~~av~~~ 472 (598)
...++|+||.|+++|++|++|...|||.+|.+.
T Consensus 851 -dG~l~~~GR~d~qvki~G~rie~~eIE~~l~~~ 883 (1304)
T 2vsq_A 851 -DGTIEYAGRIDDQVKIRGHRIELEEIEKQLQEY 883 (1304)
T ss_dssp -TSCEEEEEEGGGEEEETTEEEEHHHHHHHHHHS
T ss_pred -CCeEEEEcCCCCEEEECCEeeCHHHHHHHHHhC
Confidence 778999999999999999999999999999864
No 39
>3t5a_A Long-chain-fatty-acid--AMP ligase FADD28; acetyl-COA synthetase like fold, AMP-binding; 2.05A {Mycobacterium tuberculosis} PDB: 3e53_A
Probab=98.50 E-value=2.8e-07 Score=99.73 Aligned_cols=30 Identities=17% Similarity=0.193 Sum_probs=18.7
Q ss_pred ccccceeecccccCCCcccccccChhhHHHH
Q 007568 103 QEPITKLSLSSGTTEGRQKYVPFTKHSSQTT 133 (598)
Q Consensus 103 ~~~i~~f~~TSGTT~G~~K~IP~T~~~l~~~ 133 (598)
++.+.+...||||| |+||-+..|+..+...
T Consensus 182 ~~d~a~i~~TSGTT-G~PKgV~~th~~l~~~ 211 (480)
T 3t5a_A 182 YPSTAYLQYTSGST-RTPAGVVMSHQNVRVN 211 (480)
T ss_dssp CCSEEEEECC-------CCCEEEEHHHHHHH
T ss_pred CCceEEEEecCCCC-CCCcEEEEeHHHHHHH
Confidence 34466888999999 8999999999977543
No 40
>3lax_A Phenylacetate-coenzyme A ligase; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 1.43A {Bacteroides vulgatus}
Probab=97.26 E-value=0.00058 Score=58.92 Aligned_cols=90 Identities=9% Similarity=0.076 Sum_probs=55.4
Q ss_pred ecCceEeeceeecCHHHHHHHHHHHHhhhhccCCeeeeeEEeeccCCCCceEEEEEEecCC--CccchHHHHHHHHHhhc
Q 007568 448 RRKLILTVNIDKNTEKDLQLVVDRGSQLLNKTGAELVDFTSHADIVNQPGHYIIYWEIKGD--VEEGVLNQCCHEMDVSF 525 (598)
Q Consensus 448 R~~~~l~~~Gekv~e~~v~~av~~~~~~l~~~g~~l~~f~~~~~~~~~~~~Y~~~vE~~~~--~~~~~l~~~~~~ld~~l 525 (598)
|.||||+++|.|+++.+||++|.+.. ++. ..+.+..+.......-.++++.... .+...++.+++.+.+++
T Consensus 2 rADDmIiv~G~nv~P~eIE~vl~~~p------~v~-~~~vv~v~~~~~~~~~~~~V~~~~~~~~~~~~~~~l~~~i~~~l 74 (109)
T 3lax_A 2 NADDMIILKGVNIFPIQIETILLQFK------ELG-SDYLITLETAESNDEMTVEVELSQLFTDDYGRLQALTREITRQL 74 (109)
T ss_dssp GGGSCEEETTEEECHHHHHHHHHTCT------TEE-EEEEEEEEEETTEEEEEEEEEECTTCCCCHHHHHHHHHHHHHHH
T ss_pred CcCEEEEECCEEECHHHHHHHHHhCC------Ccc-cceEEEEeccccceeEEEEEEEeeccccccchhhhhHHHHHHHH
Confidence 89999999999999999999997542 221 1233332211111234467777543 23334555666666554
Q ss_pred CCchhHhhhhcCCcCCeEEEEeccchHH
Q 007568 526 VDPGYVVSRRTNSIGPLELCIVKRGAFR 553 (598)
Q Consensus 526 ~n~~Y~~~R~~g~l~p~~v~~v~~g~f~ 553 (598)
+...| + +++|.+|++|++.
T Consensus 75 -------~~~~g-v-~~~v~~v~~~~lP 93 (109)
T 3lax_A 75 -------KDEIL-V-TPRVKLVPKGALP 93 (109)
T ss_dssp -------HHHHS-S-CCEEEEECTTCSC
T ss_pred -------HHHhC-C-ccceEEEcCCeec
Confidence 11223 3 4589999999987
No 41
>3gxs_A Phenylacetate-coenzyme A ligase; APC62324.1, structural genomics, PSI-2, protein structure initiative; 1.43A {Bacteroides vulgatus atcc 8482} PDB: 3lax_A
Probab=97.08 E-value=0.0012 Score=57.20 Aligned_cols=90 Identities=9% Similarity=0.093 Sum_probs=55.4
Q ss_pred eecCceEeeceeecCHHHHHHHHHHHHhhhhccCCeeeeeEEeeccCCCCceEEEEEEecCCCc---cchHHHHHHHHHh
Q 007568 447 CRRKLILTVNIDKNTEKDLQLVVDRGSQLLNKTGAELVDFTSHADIVNQPGHYIIYWEIKGDVE---EGVLNQCCHEMDV 523 (598)
Q Consensus 447 gR~~~~l~~~Gekv~e~~v~~av~~~~~~l~~~g~~l~~f~~~~~~~~~~~~Y~~~vE~~~~~~---~~~l~~~~~~ld~ 523 (598)
||.+|||+++|.++++.+|+++|.+. + ++. ..|.+..+.....-.-++++|. .+.. ....+++.+.+.+
T Consensus 1 GR~~D~Iiv~G~nv~P~eIE~~l~~~-p-----~v~-~~~~v~v~~~~~~e~l~~~ve~-~~~~~~~~~~~~~l~~~i~~ 72 (109)
T 3gxs_A 1 SNADDMIILKGVNIFPIQIETILLQF-K-----ELG-SDYLITLETAESNDEMTVEVEL-SQLFTDDYGRLQALTREITR 72 (109)
T ss_dssp CGGGSCEEETTEEECHHHHHHHHHTC-T-----TEE-EEEEEEEEEETTEEEEEEEEEE-CTTCCCCHHHHHHHHHHHHH
T ss_pred CCccCEEEECCEEECHHHHHHHHHhC-C-----CcC-CcEEEEEEcCCCceEEEEEEEE-cCccccchhHHHHHHHHHHH
Confidence 79999999999999999999999863 2 221 1344432211111245688888 3321 1234445555555
Q ss_pred hcCCchhHhhhhcCCcCCeEEEEeccchHH
Q 007568 524 SFVDPGYVVSRRTNSIGPLELCIVKRGAFR 553 (598)
Q Consensus 524 ~l~n~~Y~~~R~~g~l~p~~v~~v~~g~f~ 553 (598)
.+ +...| +. ++|.+|++|++.
T Consensus 73 ~l-------~~~~~-~~-~~v~~v~~~~lP 93 (109)
T 3gxs_A 73 QL-------KDEIL-VT-PRVKLVPKGALP 93 (109)
T ss_dssp HH-------HHHHS-SC-CEEEEECTTCSC
T ss_pred HH-------HHhhC-Cc-eEEEEECCCCcc
Confidence 44 11223 44 499999999876
No 42
>2qmx_A Prephenate dehydratase; APC86053, L-Phe inhibition, PDT, CHL tepidum TLS, structural genomics, PSI-2, protein structure initiative; HET: PHE; 2.30A {Chlorobium tepidum tls}
Probab=23.86 E-value=2.9e+02 Score=27.36 Aligned_cols=57 Identities=14% Similarity=0.231 Sum_probs=36.7
Q ss_pred HHHHHHHHHHHHhhhhccCCeeeeeEEeeccCCCCceEEEEEEecCCCccchHHHHHHHHHh
Q 007568 462 EKDLQLVVDRGSQLLNKTGAELVDFTSHADIVNQPGHYIIYWEIKGDVEEGVLNQCCHEMDV 523 (598)
Q Consensus 462 e~~v~~av~~~~~~l~~~g~~l~~f~~~~~~~~~~~~Y~~~vE~~~~~~~~~l~~~~~~ld~ 523 (598)
+..+.+++..+.. .|+.+.-.-..+- ...++.|.+|||+.+..+.+.+++..+.|.+
T Consensus 211 pGaL~~~L~~Fa~----~gINLtkIESRP~-~~~~~~Y~FfvD~eg~~~d~~v~~aL~~L~~ 267 (283)
T 2qmx_A 211 QGSLFRALATFAL----RGIDLTKIESRPS-RKKAFEYLFYADFIGHREDQNVHNALENLRE 267 (283)
T ss_dssp TTHHHHHHHHHHT----TTCCEEEEEEEEC-SSSTTEEEEEEEEESCTTSHHHHHHHHHHHT
T ss_pred CchHHHHHHHHHH----cCCCeeEEEeeEc-CCCCcceEEEEEEecCCCcHHHHHHHHHHHH
Confidence 5567677776644 6777776665543 3457899999999876554445544444443
Done!