BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 007570
(598 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1FVF|A Chain A, Crystal Structure Analysis Of Neuronal Sec1 From The Squid
L. Pealei
pdb|1FVF|B Chain B, Crystal Structure Analysis Of Neuronal Sec1 From The Squid
L. Pealei
pdb|1FVH|A Chain A, Crystal Structure Analysis Of Neuronal Sec1 From The Squid
L. Pealei
Length = 591
Score = 186 bits (471), Expect = 4e-47, Method: Compositional matrix adjust.
Identities = 156/570 (27%), Positives = 280/570 (49%), Gaps = 74/570 (12%)
Query: 32 SVVAFLSDMSG-KSPLYKKAFVFFSSPISRELVTHIKKDSTVLPRIGALREMNLEYFAVD 90
SV ++D +P Y+ A +FF+ EL + K ST I L+E+N+ + +
Sbjct: 80 SVKCLMADFQNPDNPQYRGAHIFFTEACPEELFKELCK-STTARFIKTLKEINIAFLPYE 138
Query: 91 SQGFVTDDERALEELFGDEESSQKADACLNVMATRIATVFASLREFPLVRYRAAKSLDAM 150
SQ F D + ++ + +Q A +IAT+ A+L E+P VRYR+ +A
Sbjct: 139 SQIFSLDSPDTFQ-VYYNPSRAQGGIPNKERCAEQIATLCATLGEYPSVRYRSDFDENA- 196
Query: 151 TITTFRDLVPTKLAAGVWNCLMKYKQ---TIQNFPMSETCELLILDRSVDQIAPIIHEWT 207
+F LV KL A Y+ T+ P + +LLILDR D I+P++HE T
Sbjct: 197 ---SFAQLVQQKLDA--------YRADDPTMGEGPQKDRSQLLILDRGFDPISPLLHELT 245
Query: 208 YDAICHDLLNLEGNKYVHEVPSKTDGPPEKKEVLLEEHDPIWVELRHAHIADASERLHEK 267
+ A+ +DLL +E + Y + V + + PE KEVLL+E D +WVE+RH HIA S+ + +K
Sbjct: 246 FQAMAYDLLPIENDVYKY-VNTGGNEVPE-KEVLLDEKDDLWVEMRHQHIAVVSQNVTKK 303
Query: 268 MTGFVSKNKAAQIQNGSRDGSNLSTRDLQKLVQALPQYSEQIDKLSLHVEIAGKINRIIR 327
+ F + + + + +DL ++++ +PQY +++ K S H+ +A + +
Sbjct: 304 LKQFADEKRMGTAADKA------GIKDLSQMLKKMPQYQKELSKYSTHLHLAEDCMKQYQ 357
Query: 328 ETGLRELGQLEQDLVFG-DAG-------FKDVIKFLTAKEDITRENKLRLLMIVASIYPE 379
+ + +L ++EQDL G DA ++++ L ++ I+ +K+R++++ I+
Sbjct: 358 QH-VDKLCKVEQDLAMGTDADGEKIRDHMRNIVPILLDQK-ISAYDKIRIILLYI-IHKG 414
Query: 380 KFEGEKGLNLMKLAKLTADDMTAVNNMRLLGGALESKKSTIGAFSLKFDIHKKKRAARKD 439
E L++ A + A++ +N+M+ LG + G + H R R+
Sbjct: 415 GISEENLAKLVQHAHIPAEEKWIINDMQNLGVPIIQDG---GRRKIPQPYHTHNRKERQ- 470
Query: 440 RSGGEETWQLSRFYPMIEELVEKLGKNELSKDDYPCMNDPSPTFHGTTPSALTNEVPAAH 499
+ T+Q+SR+ P +++++E +++L YP +N P P+
Sbjct: 471 ---ADHTYQMSRWTPYMKDIMEAAVEDKLDTRHYPFLNGGGPR-------------PSCQ 514
Query: 500 SMRSRRTPTWARPRSSDDGYSSDSVLKHASSDFKKMGQRIFVFIVGGTTRSELRVCHKL- 558
S R W + D G +S K G R+ +F+VGG + SE+R +++
Sbjct: 515 QPVSVRYGHWHK----DKGQAS-----------YKSGPRLIIFVVGGISYSEMRSAYEVT 559
Query: 559 -TAKLNREVVLGSSSLDDPPQFITKLKMLT 587
TAK N EV+LGS+ + P + L+ ++
Sbjct: 560 QTAKNNWEVILGSTHILTPEGLLRDLRKIS 589
>pdb|3PUJ|A Chain A, Crystal Structure Of The Munc18-1 And Syntaxin4 N-Peptide
Complex
pdb|3PUJ|B Chain B, Crystal Structure Of The Munc18-1 And Syntaxin4 N-Peptide
Complex
Length = 594
Score = 181 bits (459), Expect = 9e-46, Method: Compositional matrix adjust.
Identities = 152/568 (26%), Positives = 277/568 (48%), Gaps = 78/568 (13%)
Query: 32 SVVAFLSDMSGK-SPLYKKAFVFFSSPISRELVTHIKKDSTVLPRIGALREMNLEYFAVD 90
SV + +SD + Y+ A VFF+ L + K S I L E+N+ + +
Sbjct: 83 SVHSLISDFKDPPTAKYRAAHVFFTDSCPDALFNELVK-SRAAKVIKTLTEINIAFLPYE 141
Query: 91 SQGFVTDDERALEELFGDEESSQKADACLNVMATRIATVFASLREFPLVRYRAAKSLDAM 150
SQ + D + + + ++ K + L +A +IAT+ A+L+E+P VRYR +A+
Sbjct: 142 SQVYSLDSADSFQSFYSPHKAQMK-NPILERLAEQIATLCATLKEYPAVRYRGEYKDNAL 200
Query: 151 TITTFRDLVPTKLAAGVWNCLMKYKQ---TIQNFPMSETCELLILDRSVDQIAPIIHEWT 207
LA + + L YK T+ P +LLILDR D +P++HE T
Sbjct: 201 ------------LAQLIQDKLDAYKADDPTMGEGPDKARSQLLILDRGFDPSSPVLHELT 248
Query: 208 YDAICHDLLNLEGNKYVHEVPSKTDGPPEKKEVLLEEHDPIWVELRHAHIADASERLHEK 267
+ A+ +DLL +E + Y +E + G KEVLL+E D +W+ LRH HIA+ S+ +
Sbjct: 249 FQAMSYDLLPIENDVYKYE--TSGIGEARVKEVLLDEDDDLWIALRHKHIAEVSQEVTRS 306
Query: 268 MTGFVSKNKAAQIQNGSRDGSNLSTRDLQKLVQALPQYSEQIDKLSLHVEIAGKINRIIR 327
+ F S + G + RDL ++++ +PQY +++ K S H+ +A + +
Sbjct: 307 LKDFSSSKRM-------NTGEKTTMRDLSQMLKKMPQYQKELSKYSTHLHLAEDCMKHYQ 359
Query: 328 ETGLRELGQLEQDLVFG-DA---GFKDVIKFLTA---KEDITRENKLRLLMIVASIYPEK 380
T + +L ++EQDL G DA KD ++ + +++ +K+R++++ I+ +
Sbjct: 360 GT-VDKLCRVEQDLAMGTDAEGEKIKDPMRAIVPILLDANVSTYDKIRIILLY--IFLKN 416
Query: 381 FEGEKGLN-LMKLAKLTADDMTAVNNMRLLGGALESKKSTIGAFSLKFDIHKKKRAARKD 439
E+ LN L++ A++ +D + NM LG + + + + ++ + RK+
Sbjct: 417 GITEENLNKLIQHAQIPPEDSEIITNMAHLGVPIVTDST----------LRRRSKPERKE 466
Query: 440 RSGGEETWQLSRFYPMIEELVEKLGKNELSKDDYPCMNDPSPTFHGTTPSALTNEVPAAH 499
R E+T+QLSR+ P+I++++E +++L YP ++ S TT
Sbjct: 467 RI-SEQTYQLSRWTPIIKDIMEDTIEDKLDTKHYPYISTRSSASFSTTAV---------- 515
Query: 500 SMRSRRTPTWARPRSSDDGYSSDSVLKHASSDFKKMGQRIFVFIVGGTTRSELRVCHKLT 559
S R W + ++ + S G R+ +FI+GG + +E+R +++T
Sbjct: 516 ---SARYGHWHKNKAPGEYRS---------------GPRLIIFILGGVSLNEMRCAYEVT 557
Query: 560 -AKLNREVVLGSSSLDDPPQFITKLKML 586
A EV++GS+ + P + + LK L
Sbjct: 558 QANGKWEVLIGSTHILTPQKLLDTLKKL 585
>pdb|3C98|A Chain A, Revised Structure Of The Munc18a-Syntaxin1 Complex
Length = 606
Score = 181 bits (458), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 153/577 (26%), Positives = 280/577 (48%), Gaps = 78/577 (13%)
Query: 23 IYCLFCYFCSVVAFLSDMSGK-SPLYKKAFVFFSSPISRELVTHIKKDSTVLPRIGALRE 81
+Y + SV + +SD + Y+ A VFF+ L + K S I L E
Sbjct: 86 VYLITPSEKSVHSLISDFKDPPTAKYRAAHVFFTDSCPDALFNELVK-SRAAKVIKTLTE 144
Query: 82 MNLEYFAVDSQGFVTDDERALEELFGDEESSQKADACLNVMATRIATVFASLREFPLVRY 141
+N+ + +SQ + D + + + ++ K + L +A +IAT+ A+L+E+P VRY
Sbjct: 145 INIAFLPYESQVYSLDSADSFQSFYSPHKAQMK-NPILERLAEQIATLCATLKEYPAVRY 203
Query: 142 RAAKSLDAMTITTFRDLVPTKLAAGVWNCLMKYKQ---TIQNFPMSETCELLILDRSVDQ 198
R +A+ LA + + L YK T+ P +LLILDR D
Sbjct: 204 RGEYKDNAL------------LAQLIQDKLDAYKADDPTMGEGPDKARSQLLILDRGFDP 251
Query: 199 IAPIIHEWTYDAICHDLLNLEGNKYVHEVPSKTDGPPEKKEVLLEEHDPIWVELRHAHIA 258
+P++HE T+ A+ +DLL +E + Y +E + G KEVLL+E D +W+ LRH HIA
Sbjct: 252 SSPVLHELTFQAMSYDLLPIENDVYKYE--TSGIGEARVKEVLLDEDDDLWIALRHKHIA 309
Query: 259 DASERLHEKMTGFVSKNKAAQIQNGSRDGSNLSTRDLQKLVQALPQYSEQIDKLSLHVEI 318
+ S+ + + F S + G + RDL ++++ +PQY +++ K S H+ +
Sbjct: 310 EVSQEVTRSLKDFSSSKRM-------NTGEKTTMRDLSQMLKKMPQYQKELSKYSTHLHL 362
Query: 319 AGKINRIIRETGLRELGQLEQDLVFG-DA---GFKDVIKFLTA---KEDITRENKLRLLM 371
A + + T + +L ++EQDL G DA KD ++ + +++ +K+R+++
Sbjct: 363 AEDCMKHYQGT-VDKLCRVEQDLAMGTDAEGEKIKDPMRAIVPILLDANVSTYDKIRIIL 421
Query: 372 IVASIYPEKFEGEKGLN-LMKLAKLTADDMTAVNNMRLLGGALESKKSTIGAFSLKFDIH 430
+ I+ + E+ LN L++ A++ +D + NM LG + + + +
Sbjct: 422 LY--IFLKNGITEENLNKLIQHAQIPPEDSEIITNMAHLGVPIVTDST----------LR 469
Query: 431 KKKRAARKDRSGGEETWQLSRFYPMIEELVEKLGKNELSKDDYPCMNDPSPTFHGTTPSA 490
++ + RK+R E+T+QLSR+ P+I++++E +++L YP ++ S TT
Sbjct: 470 RRSKPERKERI-SEQTYQLSRWTPIIKDIMEDTIEDKLDTKHYPYISTRSSASFSTTAV- 527
Query: 491 LTNEVPAAHSMRSRRTPTWARPRSSDDGYSSDSVLKHASSDFKKMGQRIFVFIVGGTTRS 550
S R W + ++ + S G R+ +FI+GG + +
Sbjct: 528 ------------SARYGHWHKNKAPGEYRS---------------GPRLIIFILGGVSLN 560
Query: 551 ELRVCHKLT-AKLNREVVLGSSSLDDPPQFITKLKML 586
E+R +++T A EV++GS+ + P + + LK L
Sbjct: 561 EMRCAYEVTQANGKWEVLIGSTHILTPQKLLDTLKKL 597
>pdb|1EPU|A Chain A, X-Ray Crystal Structure Of Neuronal Sec1 From Squid
Length = 591
Score = 172 bits (435), Expect = 7e-43, Method: Compositional matrix adjust.
Identities = 154/566 (27%), Positives = 265/566 (46%), Gaps = 66/566 (11%)
Query: 32 SVVAFLSDMSG-KSPLYKKAFVFFSSPISRELVTHIKKDSTVLPRIGALREMNLEYFAVD 90
SV +D +P Y+ A +FF+ EL + K ST I L+E+N+ + +
Sbjct: 80 SVKCLXADFQNPDNPQYRGAHIFFTEACPEELFKELCK-STTARFIKTLKEINIAFLPYE 138
Query: 91 SQGFVTDDERALEELFGDEESSQKADACLNVMATRIATVFASLREFPLVRYRAAKSLDAM 150
SQ F D + ++ + +Q A +IAT+ A+L E+P VRYR+ +A
Sbjct: 139 SQIFSLDSPDTFQ-VYYNPSRAQGGIPNKERCAEQIATLCATLGEYPSVRYRSDFDENA- 196
Query: 151 TITTFRDLVPTKLAAGVWNCLMKYKQTIQNFPMSETCELLILDRSVDQIAPIIHEWTYDA 210
+F LV KL A T P + +LLILDR D I+P++HE T+ A
Sbjct: 197 ---SFAQLVQQKLDA-----YRADDPTXGEGPQKDRSQLLILDRGFDPISPLLHELTFQA 248
Query: 211 ICHDLLNLEGNKYVHEVPSKTDGPPEKKEVLLEEHDPIWVELRHAHIADASERLHEKMTG 270
+DLL +E + Y + V + + PE KEVLL+E D +WVE RH HIA S+ + +K+
Sbjct: 249 XAYDLLPIENDVYKY-VNTGGNEVPE-KEVLLDEKDDLWVEXRHQHIAVVSQNVTKKLKQ 306
Query: 271 FVSKNKAAQIQNGSRDGSNLSTRDLQKLVQALPQYSEQIDKLSLHVEIAGKINRIIRETG 330
F + + + + +DL + ++ PQY +++ K S H+ +A + ++
Sbjct: 307 FADEKRXGTAADKA------GIKDLSQXLKKXPQYQKELSKYSTHLHLAEDCXKQYQQH- 359
Query: 331 LRELGQLEQDLVFG-DAGFKDV------IKFLTAKEDITRENKLRLLMIVASIYPEKFEG 383
+ +L ++EQDL G DA + + I + + I+ +K+R++++ I+
Sbjct: 360 VDKLCKVEQDLAXGTDADGEKIRDHXRNIVPILLDQKISAYDKIRIILLYI-IHKGGISE 418
Query: 384 EKGLNLMKLAKLTADDMTAVNNMRLLGGALESKKSTIGAFSLKFDIHKKKRAARKDRSGG 443
E L++ A + A++ +N+ + LG + G + H R R+
Sbjct: 419 ENLAKLVQHAHIPAEEKWIINDXQNLGVPIIQDG---GRRKIPQPYHTHNRKERQ----A 471
Query: 444 EETWQLSRFYPMIEELVEKLGKNELSKDDYPCMNDPSPTFHGTTPSALTNEVPAAHSMRS 503
+ T+Q SR+ P +++ E +++L YP +N P P+ S
Sbjct: 472 DHTYQXSRWTPYXKDIXEAAVEDKLDTRHYPFLNGGGPR-------------PSCQQPVS 518
Query: 504 RRTPTWARPRSSDDGYSSDSVLKHASSDFKKMGQRIFVFIVGGTTRSELRVCHKL--TAK 561
R W + D G +S K G R+ +F+VGG + SE R +++ TAK
Sbjct: 519 VRYGHWHK----DKGQAS-----------YKSGPRLIIFVVGGISYSEXRSAYEVTQTAK 563
Query: 562 LNREVVLGSSSLDDPPQFITKLKMLT 587
N EV+LGS+ + P + L+ ++
Sbjct: 564 NNWEVILGSTHILTPEGLLRDLRKIS 589
>pdb|2XHE|A Chain A, Crystal Structure Of The Unc18-Syntaxin 1 Complex From
Monosiga Brevicollis
Length = 650
Score = 159 bits (402), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 128/576 (22%), Positives = 268/576 (46%), Gaps = 50/576 (8%)
Query: 37 LSDMSGKSPLYKKAFVFFSSPISRELVTHIKKDSTVLPRIGALREMNLEYFAVDSQGFVT 96
+ D + ++P Y+ A +FF SP+ L+ + V + L+E+N + + + F
Sbjct: 85 IRDFADRTPTYEAAHLFFLSPVPDALMAKLASAKAV-KYVKTLKEINTLFIPKEHRVFTL 143
Query: 97 DDERALEELFGDEESSQKADACLNVMATRIATVFASLREFPLVRYRAAKS--LDAMTITT 154
++ L + +G SS D + R++T+ ++ P+VRY + + + M +
Sbjct: 144 NEPHGLVQYYGSRSSSYNIDH----LVRRLSTLCTTMNVAPIVRYSSTSTPGTERMAMQL 199
Query: 155 FRDLVPTKLAAGVWNCLMKYKQTIQNFPMSETCELLILDRSVDQIAPIIHEWTYDAICHD 214
++ + ++ G+ N ++ + LILDR+VD +P++HE TY A +D
Sbjct: 200 QKE-IDMSVSQGLINAREGKLKS----------QFLILDRAVDLKSPLVHELTYQAAAYD 248
Query: 215 LLNLEGNKYVHEVPSKTDGPPEKKEVLLEEHDPIWVELRHAHIADASERLHEKMTGFVSK 274
LLN+E + Y + G ++++V+L E D IW+++RH HI++ ++ F
Sbjct: 249 LLNIENDIYSYST-VDAGGREQQRQVVLGEDDDIWLQMRHLHISEVFRKVKSSFDEFCVS 307
Query: 275 NKAAQIQNGSRDGSNLSTRDLQKLVQALPQYSEQIDKLSLHVEIAGKINRIIRETGLREL 334
+ Q S+ G L+++++ LPQ+ EQ+ K SLH++++ IN T +
Sbjct: 308 ARRLQGLRDSQQGEG-GAGALKQMLKDLPQHREQMQKYSLHLDMSNAINMAFSST-IDSC 365
Query: 335 GQLEQDLVFGDA-------GFKDVIKFLTAKEDITRENKLRLLMIVASIYPEKFEGEKGL 387
+ EQ++V + F + + ++ E+KLR LM+ + +
Sbjct: 366 TKAEQNIVTEEEQDGNKVRDFIGEVASVVVDRRVSTEDKLRCLMLCV-LAKNGTSSHELN 424
Query: 388 NLMKLAKLTADDMTAVNNMRLLGGALESKKSTIGAFSLKFDIHKKKRAARKDRSGGEETW 447
NL+ A + +A+ N+ +LG + + + K K R +R + +
Sbjct: 425 NLLDNANIATPSRSAIYNLEMLGATVVADRRG----------RKPKTMKRIER---DMPY 471
Query: 448 QLSRFYPMIEELVEKLGKNELSKDDYPCMNDPSPTFHGTTPSALTNEVPAAHSMRSRRTP 507
LSR+ P++++L+E + +L + YP + D S E + +R+
Sbjct: 472 VLSRWTPIVKDLMEYIATGQLDLESYPAVRDGPSVVQPKRASKSVEEDDDGPATSARKRG 531
Query: 508 TWARPRSSDDGYSSD----SVLKHASSDFKKMGQ-RIFVFIVGGTTRSELRVCHKLTAKL 562
WA+ + ++ S +V + ++ + + ++FVFI G + +E+R ++++
Sbjct: 532 NWAKNKGNNRSLPSTPSGVAVSGNGAAGAAESAKPKLFVFINGTVSYNEIRCAYEVSQSS 591
Query: 563 NREVVLGSSSLDDPPQFITKLKMLTAHELSLDDIQI 598
EV +G+ ++ P +F+ + +L + D+Q+
Sbjct: 592 GYEVYIGAHNIATPAEFVELVSLLDKAD---QDVQV 624
>pdb|2PJX|A Chain A, Crystal Structure Of The Munc18cSYNTAXIN4 N-Peptide
Complex
pdb|2PJX|B Chain B, Crystal Structure Of The Munc18cSYNTAXIN4 N-Peptide
Complex
pdb|3PUK|A Chain A, Re-Refinement Of The Crystal Structure Of Munc18-3 And
Syntaxin4 N- Peptide Complex
pdb|3PUK|B Chain B, Re-Refinement Of The Crystal Structure Of Munc18-3 And
Syntaxin4 N- Peptide Complex
Length = 592
Score = 158 bits (400), Expect = 7e-39, Method: Compositional matrix adjust.
Identities = 154/566 (27%), Positives = 265/566 (46%), Gaps = 81/566 (14%)
Query: 32 SVVAFLSDMSGKS-PLYKKAFVFFSSPISRELVTHIKKDSTVLPRIGALREMNLEYFAVD 90
SV FL D KS YK A+++F+ L IK ++ I +E+N+ + +
Sbjct: 87 SVDCFLRDFGSKSEKKYKAAYIYFTDFCPDSLFNKIK--ASCSKSIRRCKEINISFIPQE 144
Query: 91 SQGFVTDDERALEELFG-DEESSQKADACLNVMATRIATVFASLREFPLVRYRAAKSLDA 149
SQ + D A + D ++ + + + MA +I TV A+L E P VRY++ K LD
Sbjct: 145 SQVYTLDVPDAFYYCYSPDPSNASRKEVVMEAMAEQIVTVCATLDENPGVRYKS-KPLD- 202
Query: 150 MTITTFRDLVPTKLAAGVWNCLMKYKQTIQNFPMSET-CELLILDRSVDQIAPIIHEWTY 208
+ LV KL YK + +T +LLI+DR D ++ ++HE T+
Sbjct: 203 -NASKLAQLVEKKLEDY-------YKIDEKGLIKGKTQSQLLIIDRGFDPVSTVLHELTF 254
Query: 209 DAICHDLLNLEGNKYVHEVPSKTDGPPEKKEVLLEEHDPIWVELRHAHIADASERLHEKM 268
A+ +DLL +E + Y + KTDG ++KE +LEE D +WV +RH HIA E + + M
Sbjct: 255 QAMAYDLLPIENDTYKY----KTDG--KEKEAVLEEDDDLWVRVRHRHIAVVLEEIPKLM 308
Query: 269 TGFVSKNKAAQIQNGSRDGSNLSTRDLQKLVQALPQYSEQIDKLSLHVEIAGK-INRIIR 327
S KA + S L +L++ +P + +QI K +H+ +A +N+
Sbjct: 309 KEISSTKKATE--------GKTSLSALTQLMKKMPHFRKQISKQVVHLNLAEDCMNKF-- 358
Query: 328 ETGLRELGQLEQDLVFG-DAGFKDV----IKFLTAKEDITRENKLRLLMIVASIYPEKFE 382
+ + +L + EQDL G DA + V + L + +N ++ ++ I+
Sbjct: 359 KLNIEKLCKTEQDLALGTDAEGQRVKDSMLVLLPVLLNKNHDNCDKIRAVLLYIFGINGT 418
Query: 383 GEKGLNLMKLAKLTADDMTAVNNMRLLGGALESKKSTIGAFSLKFDIHKKKRAARKDRSG 442
E+ L+ + DD + N LG + ++ + RKDRS
Sbjct: 419 TEENLDRLIHNVKIEDDSDMIRNWSHLGVPI-------------VPPSQQAKPLRKDRS- 464
Query: 443 GEETWQLSRFYPMIEELVEKLGKNELSKDDYPCMNDPSPTFHGTTPSALTNEVPAAHSMR 502
EET+QLSR+ P I++++E N L ++P + ++G+ A S R
Sbjct: 465 AEETFQLSRWTPFIKDIMEDAIDNRLDSKEWPYCSRCPAVWNGS----------GAVSAR 514
Query: 503 SRRTPTWARPRSSDDGYSSDSVLKHASSDFKKMGQRIFVFIVGGTTRSELRVCHKLT-AK 561
+PR++ + D +K G R+ +F++GG T SE+R ++++ A
Sbjct: 515 Q-------KPRTN-----------YLELD-RKNGSRLIIFVIGGITYSEMRCAYEVSQAH 555
Query: 562 LNREVVLGSSSLDDPPQFITKLKMLT 587
+ EV++GS+ + P + + +KML
Sbjct: 556 KSCEVIIGSTHILTPRKLLDDIKMLN 581
>pdb|1MQS|A Chain A, Crystal Structure Of Sly1p In Complex With An N-Terminal
Peptide Of Sed5p
Length = 671
Score = 67.0 bits (162), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 76/326 (23%), Positives = 139/326 (42%), Gaps = 45/326 (13%)
Query: 43 KSPLYKKAFVFFSSPISRELVTHIKKDSTVLPRIGALREMNLEY----------FAVD-S 91
KS Y + ++ F+S + R L+ + + ++ + ++++ +Y F+++ S
Sbjct: 122 KSDKYSEFYINFTSSLPRNLLEDLAQQVSITGKSDKIKQVYDQYLDFIVTEPELFSLEIS 181
Query: 92 QGFVT--DDERALEELFGDEESSQKADACLNVMATRIATVFASLREFPLVRYRAAKSLDA 149
++T D + EE+ G C N+ TV ++ P++R AAK A
Sbjct: 182 NAYLTLNDPKTTEEEITG---------LCANIADGLFNTVL-TINSIPIIR--AAKGGPA 229
Query: 150 MTITTFRDLVPTKLAAGVWNCLMKYKQTIQNFPMSETCELLILDRSVDQIAPIIHEWTYD 209
I + + TKL V N T+Q E L+ILDR++D + H W Y
Sbjct: 230 EIIA---EKLGTKLRDFVINTNSSSTSTLQGNDSLERGVLIILDRNIDFASXFSHSWIYQ 286
Query: 210 AICHDLLNLEGNKYVHEVPSKTDG-------PPEKKEVLLEEHDPIWVELRHAHIADASE 262
D+ L N + SK +G P K+ +E +D W E H +A+E
Sbjct: 287 CXVFDIFKLSRNTVTIPLESKENGTDNTTAKPLATKKYDIEPNDFFWXENSHLPFPEAAE 346
Query: 263 RLHEKMTGFVSKNKAAQI--QNGSRD------GSNLSTRDLQKLVQALPQYSEQIDKLSL 314
+ + + K +AA+I + G + SN T +Q++V+ LP+ + + + +
Sbjct: 347 NVEAALNTY--KEEAAEITRKTGVTNISDLDPNSNNDTVQIQEVVKKLPELTAKKNTIDT 404
Query: 315 HVEIAGKINRIIRETGLRELGQLEQD 340
H I + + L ++EQD
Sbjct: 405 HXNIFAALLSQLESKSLDTFFEVEQD 430
>pdb|4B8B|A Chain A, N-Terminal Domain Of The Yeast Not1
pdb|4B8B|B Chain B, N-Terminal Domain Of The Yeast Not1
Length = 603
Score = 29.6 bits (65), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 16/29 (55%)
Query: 203 IHEWTYDAICHDLLNLEGNKYVHEVPSKT 231
+H+W+ C DLLN EG + V E T
Sbjct: 161 LHKWSVQNGCFDLLNAEGTRKVSETIPNT 189
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.134 0.389
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 16,982,284
Number of Sequences: 62578
Number of extensions: 692695
Number of successful extensions: 1697
Number of sequences better than 100.0: 11
Number of HSP's better than 100.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 1651
Number of HSP's gapped (non-prelim): 11
length of query: 598
length of database: 14,973,337
effective HSP length: 104
effective length of query: 494
effective length of database: 8,465,225
effective search space: 4181821150
effective search space used: 4181821150
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 54 (25.4 bits)