Query 007570
Match_columns 598
No_of_seqs 128 out of 963
Neff 8.0
Searched_HMMs 46136
Date Thu Mar 28 12:24:37 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007570.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/007570hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1300 Vesicle trafficking pr 100.0 2.1E-92 4.6E-97 741.6 49.1 528 1-585 29-583 (593)
2 PF00995 Sec1: Sec1 family; I 100.0 6.9E-82 1.5E-86 708.4 40.9 516 1-583 6-564 (564)
3 KOG1299 Vacuolar sorting prote 100.0 1.9E-76 4.1E-81 600.4 42.5 470 22-586 68-548 (549)
4 KOG1302 Vacuolar sorting prote 100.0 2.1E-73 4.7E-78 600.3 38.8 488 22-583 81-599 (600)
5 COG5158 SEC1 Proteins involved 100.0 3.1E-72 6.8E-77 601.8 44.9 501 22-589 70-580 (582)
6 KOG1301 Vesicle trafficking pr 100.0 2.9E-71 6.3E-76 569.2 39.1 509 10-589 61-617 (621)
7 PF14071 YlbD_coat: Putative c 57.9 12 0.00026 33.1 3.4 14 240-253 32-45 (124)
8 PRK05581 ribulose-phosphate 3- 50.3 21 0.00046 34.7 4.3 44 539-586 171-214 (220)
9 PRK08883 ribulose-phosphate 3- 42.4 34 0.00073 33.8 4.3 45 538-586 167-211 (220)
10 PLN02334 ribulose-phosphate 3- 37.6 37 0.0008 33.5 3.8 44 539-586 175-218 (229)
11 cd00564 TMP_TenI Thiamine mono 36.7 40 0.00086 31.7 3.8 45 538-586 150-194 (196)
12 PRK00043 thiE thiamine-phospha 31.9 51 0.0011 31.7 3.7 43 539-585 161-203 (212)
13 TIGR01163 rpe ribulose-phospha 29.3 74 0.0016 30.5 4.3 44 539-586 166-209 (210)
14 TIGR00693 thiE thiamine-phosph 25.7 84 0.0018 29.9 4.0 42 539-584 153-194 (196)
15 PF12327 FtsZ_C: FtsZ family, 24.4 1.3E+02 0.0027 25.4 4.3 37 535-571 35-76 (95)
16 PTZ00170 D-ribulose-5-phosphat 23.1 94 0.002 30.7 3.8 44 538-585 173-216 (228)
17 cd00429 RPE Ribulose-5-phospha 21.9 1.3E+02 0.0028 28.7 4.5 43 539-585 167-209 (211)
18 PRK08745 ribulose-phosphate 3- 21.9 1.4E+02 0.0031 29.4 4.7 45 537-585 170-214 (223)
19 TIGR03128 RuMP_HxlA 3-hexulose 21.5 1.2E+02 0.0026 29.0 4.2 42 538-583 158-199 (206)
No 1
>KOG1300 consensus Vesicle trafficking protein Sec1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=2.1e-92 Score=741.61 Aligned_cols=528 Identities=40% Similarity=0.642 Sum_probs=450.8
Q ss_pred CCCCCchhhhhhhhhc------cccee-------------EEEEEeCCHHHHHHHHHhhcCCCCCcceEEEEecCCCCHH
Q 007570 1 MDETSLSPFSLCMHVC------VLLHM-------------LIYCLFCYFCSVVAFLSDMSGKSPLYKKAFVFFSSPISRE 61 (598)
Q Consensus 1 ~~~~~~~~~~~~~~~~------~~~~~-------------aIY~i~Pt~~si~~i~~d~~~~~~~Y~~~~i~Ft~~~~~~ 61 (598)
||.+..+.+++||... |+... |||||+||.+||++++.||..+.|+|+.+||||+..||+.
T Consensus 29 ~Dk~~~~ilss~~km~~i~~egIt~ve~i~~~ReP~~SmeaIY~i~pt~~~V~~~i~Df~~~~~~Y~~ahifF~~~c~~~ 108 (593)
T KOG1300|consen 29 VDKLTMRILSSCCKMSEILEEGITIVEDINKRREPLPSMEAIYFITPTEESVDCLIKDFEGRSPLYKAAHIFFLDPCPDP 108 (593)
T ss_pred ecchHHHHHHHHHHHHHHHHcCceeeeeccccCCCCCcceeEEEecCchhhHHHHHHhhcccCcccceEEEEEcCCCCHH
Confidence 6889999999999865 22221 9999999999999999999766799999999999999999
Q ss_pred HHHHHHhCCCccccccceeEEecceeeccCCceEeCCchhhhhhcCCCCChhhHHHHHHHHHHHHHHHHHHhCCccEEEE
Q 007570 62 LVTHIKKDSTVLPRIGALREMNLEYFAVDSQGFVTDDERALEELFGDEESSQKADACLNVMATRIATVFASLREFPLVRY 141 (598)
Q Consensus 62 ~le~la~~~~~~~~i~~i~e~~~dfipld~~lfsl~~p~~~~~l~~~~~~~~~~~~~l~~ia~~L~sl~~~lg~~P~Ir~ 141 (598)
+++.+.+ +.+...|+++++++++|+|+|+++|+++.|.+|..+|.+. +......+++.+|++|++||.++|++|.|||
T Consensus 109 lf~~l~k-s~~a~~i~tlkeinl~F~p~ESqvF~~~~~~~~~~~y~~~-~a~~~~~~l~~~a~~I~tvCatL~e~P~vRy 186 (593)
T KOG1300|consen 109 LFNKLSK-SRAAKKIKTLKEINLAFIPYESQVFTLDSPDAFLQLYSPD-NAAIIDANLEKIADQIATVCATLGEYPNVRY 186 (593)
T ss_pred HHHHHHh-hhHhhhhhhheecccccceecceeeeecChhhHHHhcCch-hhhhhhhHHHHHHHHHHHHHHHhCcCcceee
Confidence 9999974 4578899999999999999999999999999999999976 5666788999999999999999999999999
Q ss_pred ccCCccchhhhhcccchhHHHHHHHHHHHHHHhhhhcCCCCCCCCceEEEecCCCCccchhhhhhhhhHHhhhhcccCCC
Q 007570 142 RAAKSLDAMTITTFRDLVPTKLAAGVWNCLMKYKQTIQNFPMSETCELLILDRSVDQIAPIIHEWTYDAICHDLLNLEGN 221 (598)
Q Consensus 142 ~~~~~~~a~~~~~~~~~v~~~la~~l~~~l~~~~~~~~~~~~~~~~~LiIlDR~~DliTPLlh~~TYqaLl~dl~~I~~~ 221 (598)
++.....|+ .+|+++++++++.++.|++..+++|..+++.|||+||++|+++|+||+||||||+|||++|++|
T Consensus 187 ~~~~~~~as-------~l~~~va~~l~~~~~~~~~~~~~~p~~~~seLlIlDRs~D~iaPlLHE~TyqAM~~DLl~iend 259 (593)
T KOG1300|consen 187 RGDFARNAS-------ELAQKVAAKLWDAYKAYKPSIGNGPQKTRSELLILDRSFDPVAPLLHEFTYQAMAYDLLPIEND 259 (593)
T ss_pred ccccccCHH-------HHHHHHHHHHHHHHHhcccccCCCCCcccceEEEEeccccccchHHHHHHHHHHHHHHHhhcCC
Confidence 998765552 5899999999999999987667788878999999999999999999999999999999999999
Q ss_pred eEEeeccCCCCCCCcceEEecCCCChhHHHhhcCcHHHHHHHHHHHHHHHHHhhhHhhhhcCCCCCCCCCHHHHHHHHHh
Q 007570 222 KYVHEVPSKTDGPPEKKEVLLEEHDPIWVELRHAHIADASERLHEKMTGFVSKNKAAQIQNGSRDGSNLSTRDLQKLVQA 301 (598)
Q Consensus 222 ~v~~~~~~~~g~~~~~k~~~l~~~D~i~~~~R~~~~~~v~~~l~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~v~~ 301 (598)
+|.++.+..+|+. ++++.|+++|++|.++||+||++|.+.|.+.+++|.++++.+.. .++..++.||+++|++
T Consensus 260 ~Y~ye~~g~~g~~--kk~vllde~D~~WveLRH~HIadvse~l~~~~k~f~~~nk~~~~-----~~k~~S~kDL~~mv~~ 332 (593)
T KOG1300|consen 260 VYRYETPGKSGEK--KKEVLLDEDDDLWVELRHKHIADVSERLTKKMKNFSSKNKRLQT-----KSKETSTKDLSKMVKK 332 (593)
T ss_pred EEEEecCCCCCCc--cceeecccCCcHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhc-----cccccchHHHHHHHHh
Confidence 9999886655533 78899999999999999999999999999999999998764432 2335789999999999
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHhhhcCC-CchHHH-------HHHhhhcCCCChhhHHHHHHHH
Q 007570 302 LPQYSEQIDKLSLHVEIAGKINRIIRETGLRELGQLEQDLVFGD-AGFKDV-------IKFLTAKEDITRENKLRLLMIV 373 (598)
Q Consensus 302 lp~~~~~~~~l~~H~~l~~~~~~~i~~~~l~~~~~lEq~i~~~~-~~~~~l-------~~~i~~~~~~~~~dklRLl~L~ 373 (598)
||+|+++..+++.|+.||++|++.++. +|.+++.+||++++|. ...+.+ +..+. ...+...||+|++++|
T Consensus 333 lpqy~k~~~Kls~Hl~LA~eC~~~~~~-~L~~l~~iEQDLa~G~Daeg~kik~~~~~~~p~l~-~~~~~~~dklR~Illy 410 (593)
T KOG1300|consen 333 LPQYQKELDKLSLHLELAEECMKKFQE-GLEKLGAIEQDLATGTDAEGEKIKDSLRDLLPILL-ESNVRLLDKLRLILLY 410 (593)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhccCCcccccHHHHHHhhhhhhc-ccCchHHHHHHHHHHH
Confidence 999999999999999999999999988 9999999999999994 333333 33333 4689999999999999
Q ss_pred HHhcCCCCChhHHHHHHHHcCCCHHHHHHHHHHHHhcCccccCCcccCcCccchhhhhhhhhcccCCCCCCcccccccch
Q 007570 374 ASIYPEKFEGEKGLNLMKLAKLTADDMTAVNNMRLLGGALESKKSTIGAFSLKFDIHKKKRAARKDRSGGEETWQLSRFY 453 (598)
Q Consensus 374 ~l~~~~g~~~~~~~~l~q~~gl~~~~~~~l~~L~~lg~~~~~~~~~~~~~~~~f~~~k~~~~~~~~~~~~~~~y~~s~y~ 453 (598)
.+. .+|+...++.+|+++.|++.++..++.|+..+|..... +.+...| ..+.++++. .+.+|.+|||+
T Consensus 411 ~~~-~~Gi~ee~l~kL~~~~~i~~~~~~ii~~~~~~~~~~~~-----~~~~~k~-----~~~~rker~-~e~tyqlSR~~ 478 (593)
T KOG1300|consen 411 IFE-RKGIIEENLAKLLQHAGISVEEMQIIQNLHILGVPVTK-----DSFLLKF-----DPPERKERV-EEQTYQLSRWV 478 (593)
T ss_pred HHh-cCCccHHHHHHHhcccCCCchHHHHHhhHHHhCCcccc-----CcccccC-----CCCcccccc-ccceeeeeeee
Confidence 998 47999999999999999999999999999999987652 2222222 122245665 78999999999
Q ss_pred hHHHHHHHHHhcCCCCCCCCCcccCCCCCCCCCCCCCcCCCCcccccccCCCCCcccCCCCCCCCCCccccccccccccc
Q 007570 454 PMIEELVEKLGKNELSKDDYPCMNDPSPTFHGTTPSALTNEVPAAHSMRSRRTPTWARPRSSDDGYSSDSVLKHASSDFK 533 (598)
Q Consensus 454 P~i~~lve~~~~~~l~~~~~p~i~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~ 533 (598)
|.++.|+|++++++|++++|||+++++....|. ++.|. |+..|.+++.+. .+.
T Consensus 479 P~Ik~ilE~~i~~~Ld~~~fp~~~~~s~~~~~~----------~~~Sa---r~~~~~~~k~~~--------------~~~ 531 (593)
T KOG1300|consen 479 PVIKNILEKLIEDRLDKKHFPYLNDTSETSSGS----------AATSA---RYGHPLSNKTPS--------------AFK 531 (593)
T ss_pred hHHHHHHHHHHhccCChhhCccccCCccccccC----------ccccc---cccCcccccCcc--------------hhh
Confidence 999999999999999999999998775211111 11232 334555444321 123
Q ss_pred cCCCeEEEEEEcCCCHHHHHHHHHHHhhCCCeEEEccCcccChhHHHHHHhc
Q 007570 534 KMGQRIFVFIVGGTTRSELRVCHKLTAKLNREVVLGSSSLDDPPQFITKLKM 585 (598)
Q Consensus 534 ~~~~~viVFviGGvTy~Ei~al~~L~~~~~~~iiigsT~il~~~~fl~~l~~ 585 (598)
..++++||||+||+||+|+|++|+++++++++|+||||+|+||.+||+.|+.
T Consensus 532 ~~g~ri~VfIiGGvT~SEmRvaYevs~~~~~EViiGS~~iltP~~fL~~lk~ 583 (593)
T KOG1300|consen 532 KPGQRIIVFIIGGVTFSEMRVAYEVSEKLNREVIIGSDHILTPTKFLDDLKL 583 (593)
T ss_pred ccCceEEEEEeCCccHHHHHHHHHHHHhhCceEEECCcccCCHHHHHHHHhh
Confidence 5789999999999999999999999999999999999999999999999993
No 2
>PF00995 Sec1: Sec1 family; InterPro: IPR001619 Sec1-like molecules have been implicated in a variety of eukaryotic vesicle transport processes including neurotransmitter release by exocytosis []. They regulate vesicle transport by binding to a t-SNARE from the syntaxin family. This process is thought to prevent SNARE complex formation, a protein complex required for membrane fusion. Whereas Sec1 molecules are essential for neurotransmitter release and other secretory events, their interaction with syntaxin molecules seems to represent a negative regulatory step in secretion []. ; GO: 0006904 vesicle docking involved in exocytosis, 0016192 vesicle-mediated transport; PDB: 3C98_A 3PUJ_B 1FVH_A 1FVF_A 1EPU_A 2XHE_A 1MQS_A 2PJX_A 3PUK_A 1Y9J_A.
Probab=100.00 E-value=6.9e-82 Score=708.38 Aligned_cols=516 Identities=28% Similarity=0.501 Sum_probs=383.6
Q ss_pred CCCCCchhhhhhhhhc------cccee-------------EEEEEeCCHHHHHHHHHhhcCCCCCcceEEEEecCCCCHH
Q 007570 1 MDETSLSPFSLCMHVC------VLLHM-------------LIYCLFCYFCSVVAFLSDMSGKSPLYKKAFVFFSSPISRE 61 (598)
Q Consensus 1 ~~~~~~~~~~~~~~~~------~~~~~-------------aIY~i~Pt~~si~~i~~d~~~~~~~Y~~~~i~Ft~~~~~~ 61 (598)
+|+..+++|++||..+ |+... |||||+|+.+|+++|++|+++ |.|++|||+|++.+++.
T Consensus 6 ~D~~~~~ils~~~~~~~L~~~gV~~i~~l~~~r~~~~~~~~iy~i~p~~~~i~~i~~~~~~--~~~~~~~i~f~~~~~~~ 83 (564)
T PF00995_consen 6 LDKSTLKILSSLCSMSDLLEHGVTLIEKLENKREPMPSMDAIYFIRPTPENIKRIIKDLKN--PPYRSYHIFFTPRVSES 83 (564)
T ss_dssp E-HHHHHHHHCCS-HHHHHTTTEEEEEETTS--S-BTTSEEEEEE-S-HHHHHHHHHHCHS--TSBSEEEEEESS---HH
T ss_pred ECcccHHHHHhhcCHHHHHHcCCceEeeccchhhcCCCcceEEEEcCcHHHHHHHHHHHHh--cccccEEEEEehhhhhH
Confidence 3677788888887765 33322 999999999999999999975 89999999999999999
Q ss_pred HHHHHHhCCCccccccceeEEecceeeccCCceEeCCchhhhhhcC-CCCChhhHHHHHHHHHHHHHHHHHHhCCccEEE
Q 007570 62 LVTHIKKDSTVLPRIGALREMNLEYFAVDSQGFVTDDERALEELFG-DEESSQKADACLNVMATRIATVFASLREFPLVR 140 (598)
Q Consensus 62 ~le~la~~~~~~~~i~~i~e~~~dfipld~~lfsl~~p~~~~~l~~-~~~~~~~~~~~l~~ia~~L~sl~~~lg~~P~Ir 140 (598)
.++.|++ .++.++|.++.|+++||+|+|+|+|+|++|++|..+|. +.+ ...++++|++|+++|.++|.+|.||
T Consensus 84 ~~~~l~~-~~~~~~i~~i~e~~~~~~pld~d~fsl~~~~~~~~~~~~~~~-----~~~l~~~a~~L~~l~~~~g~~p~I~ 157 (564)
T PF00995_consen 84 LLEILAE-SGVLGRIKSIKEFNLDFIPLDSDLFSLEIPNSFSDLYSSDGD-----ESSLQRIADSLLSLQLTLGEIPNIR 157 (564)
T ss_dssp HHHHHHH-SCGGGGEEEEEETT--SEEECTTEEEES-TCHHHHHHSTTGH-----HHHHHHHHHHHHHHHHHTT---EEE
T ss_pred HHHhhhh-cCccceecccccceeEEEEccchhhhhcccchHHHHhccccc-----hhHHHHHHHHHHHHHHHhCCCCeEE
Confidence 9999986 56899998899999999999999999999999999998 665 7889999999999999999999999
Q ss_pred EccCCccchhhhhcccchhHHHHHHHHHHHHHH----hhhhcCCCC---CCCCceEEEecCCCCccchhhhhhhhhHHhh
Q 007570 141 YRAAKSLDAMTITTFRDLVPTKLAAGVWNCLMK----YKQTIQNFP---MSETCELLILDRSVDQIAPIIHEWTYDAICH 213 (598)
Q Consensus 141 ~~~~~~~~a~~~~~~~~~v~~~la~~l~~~l~~----~~~~~~~~~---~~~~~~LiIlDR~~DliTPLlh~~TYqaLl~ 213 (598)
|+|+. .|+++|+.+.+.+.+ +....+.++ ..++++|||+||++|++||||||||||||+|
T Consensus 158 ~~g~~-------------~a~~v~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~LiIlDR~~D~iTPll~~~TYe~li~ 224 (564)
T PF00995_consen 158 YKGNS-------------NAKRVAELLQKKLQENEDNFSSSNPDFPPGSSFERPLLIILDRSVDLITPLLHQWTYEGLID 224 (564)
T ss_dssp E-TTC-------------HHHHHHHHHHHHHHHHHTTHCHCSTTTT-SCSCCSEEEEEEEGGG-SSTTTS---BHHHHHH
T ss_pred EeCch-------------hHHHHHHHHHHHhhhccccccccccccCCccccCCceEEEecccccccchhhcCceeeeEHH
Confidence 99882 255566666655554 222223332 1235899999999999999999999999999
Q ss_pred hhcccCCCeEEeeccCCCCCCCcceEEecCCCChhHHHhhcCcHHHHHHHHHHHHHHHHHhhhHhhhhcCCCCCCCCCHH
Q 007570 214 DLLNLEGNKYVHEVPSKTDGPPEKKEVLLEEHDPIWVELRHAHIADASERLHEKMTGFVSKNKAAQIQNGSRDGSNLSTR 293 (598)
Q Consensus 214 dl~~I~~~~v~~~~~~~~g~~~~~k~~~l~~~D~i~~~~R~~~~~~v~~~l~~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 293 (598)
|+|||++|.|+++.+...+ ..++++.|+++|++|+++||+||++|+..|.++++++++++ .. ...+..+++
T Consensus 225 d~~~i~~~~v~~~~~~~~~--~~~~~~~L~~~D~~~~~~r~~~~~~v~~~l~~~~~~~~~~~-~~------~~~~~~~~~ 295 (564)
T PF00995_consen 225 DLFGINNNKVEIPDEINSG--ENKKKVVLNSNDPFFNEIRHLHFSEVGEKLNKKAKELKEEY-EK------SRSKSKSIQ 295 (564)
T ss_dssp HHSTEBTTEEEEEECSSSS--ECEEEEE-STTCTCHHHHTTSBCHHHHHHHHHHHHHHHHHC-H----------STTTHH
T ss_pred hhhhhcCCEeccccCCCcc--ccceeEecCCCCHHHHHHHhhCHHHHHHHHHHHHHHHHHhh-cc------ccchhhHHH
Confidence 9999999999998744333 12478999989999999999999999999999999998653 10 134678999
Q ss_pred HHHHHHHhchhhHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHhhhcCCCch----HHHHHHhhhcCCCChhhHHHH
Q 007570 294 DLQKLVQALPQYSEQIDKLSLHVEIAGKINRIIRETGLRELGQLEQDLVFGDAGF----KDVIKFLTAKEDITRENKLRL 369 (598)
Q Consensus 294 ~~~~~v~~lp~~~~~~~~l~~H~~l~~~~~~~i~~~~l~~~~~lEq~i~~~~~~~----~~l~~~i~~~~~~~~~dklRL 369 (598)
+|+++|++||+++++++.+++|++|+++|++.+++++|.+++++||+|++|.+.. +.+.++|. +...+..++|||
T Consensus 296 ~~~~~v~~lp~~~~~~~~l~~H~~i~~~i~~~~~~~~l~~~~~~Eq~i~~~~~~~~~~~~~i~~~i~-~~~~~~~d~LRL 374 (564)
T PF00995_consen 296 EMKEFVKKLPELQEQQKSLSLHTNIAEEILKIIKKRNLDELIELEQDIASGEDSDGELLQYIEELIN-SRKISIEDKLRL 374 (564)
T ss_dssp CHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHSCHTTSHB-SCHHHHHH-STTSTHHHHHHH
T ss_pred HHHHHHHHChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhCCccchhhHHHHHHHhh-ccCCCHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999997543 24888885 468999999999
Q ss_pred HHHHHHhcCCCCCh---hHHHHHHHHcCCCHHHHHHHHHHHHhcCccccCCcccCcCccchhhhhhhhhc------ccCC
Q 007570 370 LMIVASIYPEKFEG---EKGLNLMKLAKLTADDMTAVNNMRLLGGALESKKSTIGAFSLKFDIHKKKRAA------RKDR 440 (598)
Q Consensus 370 l~L~~l~~~~g~~~---~~~~~l~q~~gl~~~~~~~l~~L~~lg~~~~~~~~~~~~~~~~f~~~k~~~~~------~~~~ 440 (598)
+|||+++. |++. +++++++.+.|++.+++.++.+|+++|+...+.+.+ .|... ++..+.. ....
T Consensus 375 l~L~sl~~--g~~~~~~~~l~~~l~~~~~g~~~l~~l~~L~~~g~~~~~~~~~--~~~~~---~~~~~l~~~~~~~~~~~ 447 (564)
T PF00995_consen 375 LCLYSLTN--GIKGKDYDQLKKLLLQAGYGIEALQLLNNLEKLGLLKSKDNSS--NFQSI---RKKLNLISKFNDKNDKN 447 (564)
T ss_dssp HHHHHHHH---HTCBHHHHHHHHHHHTT--HCHHHHHHHGGGGTHHCBSHTTS----CTT---C-TT---HHTTCCCSSS
T ss_pred HHHHHHHh--cCCcchHHHHHHHhhhcCCChHHHHHHHHHHHhcchhhccCcc--chhhh---ccccccccccccccccc
Confidence 99999994 4443 345666666667779999999999999987642100 12111 1112111 1122
Q ss_pred CCCCcccccccchhHHHHHHHHHhcCCCC-CCCCCcccCCCCCCCCCCCCCcCCCCcccccccCCCCCcccCCCCCCCCC
Q 007570 441 SGGEETWQLSRFYPMIEELVEKLGKNELS-KDDYPCMNDPSPTFHGTTPSALTNEVPAAHSMRSRRTPTWARPRSSDDGY 519 (598)
Q Consensus 441 ~~~~~~y~~s~y~P~i~~lve~~~~~~l~-~~~~p~i~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~ 519 (598)
.+.+..|+++||+|++++||+.+.+++++ .+.||++........+. ..+++..+ +.|.+..
T Consensus 448 ~~~~~~~~~~~y~Pli~rlve~~~~~~l~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~-~~~~~~~------ 509 (564)
T PF00995_consen 448 NPKDISYVYSGYAPLIVRLVEDLIKGKLDKEEEFPYLDPKPKNLNGS-----------SFSLRSSK-PSRSKTQ------ 509 (564)
T ss_dssp SCSCCCSTTCT---HHHHHHHHHHTTHSHHTTTSEBSSTCC-----S-----------SSSSS-----------------
T ss_pred ccccccchhcccccHHHHHHHHHhhccCCcccccccccccccccCCC-----------Cccccccc-ccccccc------
Confidence 46788999999999999999999999997 88999986543111111 11222211 1111100
Q ss_pred CccccccccccccccCCCeEEEEEEcCCCHHHHHHHHHHHhhCC--CeEEEccCcccChhHHHHHH
Q 007570 520 SSDSVLKHASSDFKKMGQRIFVFIVGGTTRSELRVCHKLTAKLN--REVVLGSSSLDDPPQFITKL 583 (598)
Q Consensus 520 ~~~s~~~~~~~~~~~~~~~viVFviGGvTy~Ei~al~~L~~~~~--~~iiigsT~il~~~~fl~~l 583 (598)
....+.+++||||||||||+|++++|+++++.+ ++|+||||+|+||++||++|
T Consensus 510 -----------~~~~~~~~viVf~vGGvTy~Ei~~l~~l~~~~~~~~~iiigsT~il~~~~fl~~L 564 (564)
T PF00995_consen 510 -----------PSNKPRKRVIVFFVGGVTYSEIRALRELSKKLGPGKEIIIGSTSILNPNDFLESL 564 (564)
T ss_dssp --------------S-SSEEEEEEETEBEHHHHHHHHHHHTTSSSSSEEEEEESSBE-HHHHHHHH
T ss_pred -----------cccCCCCEEEEEEEcCCcHHHHHHHHHHHHhhCCCcEEEEEeCCccCHHHHHHhC
Confidence 012357889999999999999999999999988 99999999999999999986
No 3
>KOG1299 consensus Vacuolar sorting protein VPS45/Stt10 (Sec1 family) [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.9e-76 Score=600.44 Aligned_cols=470 Identities=24% Similarity=0.412 Sum_probs=387.4
Q ss_pred EEEEEeCCHHHHHHHHHhhcCCCCCcceEEEEecCCCCHHHHHHHHhCCCccccccceeEEecceeeccCCceEeCCchh
Q 007570 22 LIYCLFCYFCSVVAFLSDMSGKSPLYKKAFVFFSSPISRELVTHIKKDSTVLPRIGALREMNLEYFAVDSQGFVTDDERA 101 (598)
Q Consensus 22 aIY~i~Pt~~si~~i~~d~~~~~~~Y~~~~i~Ft~~~~~~~le~la~~~~~~~~i~~i~e~~~dfipld~~lfsl~~p~~ 101 (598)
||+|||||++||..+++++. +|+|..|||||||.+|+..++.||+ ++..+.|+.|+|+++||+++++++|||+.|..
T Consensus 68 cvvfiRPT~eniq~L~~ELr--nPry~~Y~lyFsN~i~ks~le~LAe-sD~~E~V~eVqE~y~Df~~~n~~Lfsln~p~~ 144 (549)
T KOG1299|consen 68 CVVFIRPTPENIQLLIEELR--NPRYGEYHLYFSNIISKSDLERLAE-SDEQEVVREVQEIYLDFFKVNPDLFSLNIPHI 144 (549)
T ss_pred EEEEeccChHHHHHHHHHhc--CCcceeEEEEEeccCCHHHHHHHHh-cchHHHHHHHHHHHHhhhccCCceeecCCchh
Confidence 99999999999999999996 5999999999999999999999996 56788899999999999999999999999998
Q ss_pred hhhhcCCCCChhhHHHHHHHHHHHHHHHHHHhCCccEEEEccCCccchhhhhcccchhHHHHHHHHHHHHHHhhhhcCCC
Q 007570 102 LEELFGDEESSQKADACLNVMATRIATVFASLREFPLVRYRAAKSLDAMTITTFRDLVPTKLAAGVWNCLMKYKQTIQNF 181 (598)
Q Consensus 102 ~~~l~~~~~~~~~~~~~l~~ia~~L~sl~~~lg~~P~Ir~~~~~~~~a~~~~~~~~~v~~~la~~l~~~l~~~~~~~~~~ 181 (598)
|....+ |....++++.+||.+++.+++..|.|||++++ ..|+++|+.+...+.+ ++...+|
T Consensus 145 ~~~~~~------w~~~~l~R~~~GI~AllLsLK~~P~IRYq~~S------------~~~~~lAe~vs~~i~~-E~~lFdf 205 (549)
T KOG1299|consen 145 FESSLN------WDPGALTRSTQGIIALLLSLKKKPVIRYQTSS------------RACKRLAEEVSYRITK-ESTLFDF 205 (549)
T ss_pred hccccc------cChhhhhHhHhhHHHHHHhccCCCeeEeecCC------------HHHHHHHHHHHHHHhh-hhhhccc
Confidence 866422 12678999999999999999999999999874 3688889888887876 4556778
Q ss_pred CCCC-CceEEEecCCCCccchhhhhhhhhHHhhhhcccCCCeEEeeccCCCCCCCcceEEecC-CCChhHHHhhcCcHHH
Q 007570 182 PMSE-TCELLILDRSVDQIAPIIHEWTYDAICHDLLNLEGNKYVHEVPSKTDGPPEKKEVLLE-EHDPIWVELRHAHIAD 259 (598)
Q Consensus 182 ~~~~-~~~LiIlDR~~DliTPLlh~~TYqaLl~dl~~I~~~~v~~~~~~~~g~~~~~k~~~l~-~~D~i~~~~R~~~~~~ 259 (598)
+.++ .|+|||+||+.|++||||+|||||||+||++||++|.|.+.. .++.+++.++++|+ .+|+||+..++.+|+|
T Consensus 206 r~~~~~p~LLiLDR~~DpvTPLL~qWTYQaMvHEl~gi~nnrvdls~--~~~~~kd~~evvLS~~~D~Ff~~nmy~NfgE 283 (549)
T KOG1299|consen 206 RRTDSPPLLLILDRRDDPVTPLLNQWTYQAMVHELLGIKNNRVDLSK--VPSIPKDLEEVVLSSEQDPFFKNNMYANFGE 283 (549)
T ss_pred ccCCCCCeEEEEecCCCCCchhhhHHHHHHHHHHHhccccCEEeecc--CCCCccccceeeeccccchHHHhhhhhhHHH
Confidence 6643 689999999999999999999999999999999999999976 23344455778886 8999999999999999
Q ss_pred HHHHHHHHHHHHHHhhhHhhhhcCCCCCCCCCHHHHHHHHHhchhhHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHH
Q 007570 260 ASERLHEKMTGFVSKNKAAQIQNGSRDGSNLSTRDLQKLVQALPQYSEQIDKLSLHVEIAGKINRIIRETGLRELGQLEQ 339 (598)
Q Consensus 260 v~~~l~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~v~~lp~~~~~~~~l~~H~~l~~~~~~~i~~~~l~~~~~lEq 339 (598)
++..|+..+.+|+.+.+ ++.+..++.||+.|+..+|++++++..++.|+.+..++++.++.++|.+++|+||
T Consensus 284 iG~~IK~lv~~fq~k~~--------~~~~iesi~Dmk~Fve~YPefkkmSG~VsKHv~lvgEls~lv~~~nL~evSEvEQ 355 (549)
T KOG1299|consen 284 IGSNIKQLVSEFQFKTK--------TNSNIESIADMKNFVEDYPEFKKMSGNVSKHVALVGELSKLVQRRNLLEVSEVEQ 355 (549)
T ss_pred HHHHHHHHHHHHHHhhh--------hchhhhhHHHHHHHHHhcHHHhhhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHH
Confidence 99999999999987432 2345679999999999999999999999999999999999999999999999999
Q ss_pred hhhcCCCc---hHHHHHHhhhcCCCChhhHHHHHHHHHHhcCCCCChhHHHHHHHH---cCCCHHHHHHHHHHHHhcCcc
Q 007570 340 DLVFGDAG---FKDVIKFLTAKEDITRENKLRLLMIVASIYPEKFEGEKGLNLMKL---AKLTADDMTAVNNMRLLGGAL 413 (598)
Q Consensus 340 ~i~~~~~~---~~~l~~~i~~~~~~~~~dklRLl~L~~l~~~~g~~~~~~~~l~q~---~gl~~~~~~~l~~L~~lg~~~ 413 (598)
++++..+. ..++.++|. +..++..|++||+|||+|.| +..++.+.+++++. .|- ..-.++..|.++++..
T Consensus 356 ~l~c~~~~~~~~~~i~~LL~-n~~vs~~d~lrLv~lYaLr~-e~~~~~~~~~L~~~l~~~~~--~~~~~v~~ll~~~G~~ 431 (549)
T KOG1299|consen 356 NLACNGDHGADFNDIKKLLQ-NEKVSEIDRLRLVALYALRY-ERHPPNELRQLPQILREQGP--KKPELVPFLLKYAGLH 431 (549)
T ss_pred HHHhcCcchhhHHHHHHHHc-CCcccHHHHHHHHHHHHHHh-ccCChHHHHHHHHHHHhcCC--CcchhHHHHHHhcCcc
Confidence 99986654 346677787 57899999999999999998 46677777776553 232 1233444455556554
Q ss_pred ccCCcccCcCccc--hhhhhhhhhcccCCCCCCcccccccchhHHHHHHHHHhcCCCCCCCCCcccCCCCCCCCCCCCCc
Q 007570 414 ESKKSTIGAFSLK--FDIHKKKRAARKDRSGGEETWQLSRFYPMIEELVEKLGKNELSKDDYPCMNDPSPTFHGTTPSAL 491 (598)
Q Consensus 414 ~~~~~~~~~~~~~--f~~~k~~~~~~~~~~~~~~~y~~s~y~P~i~~lve~~~~~~l~~~~~p~i~~~~~~~~~~~~~~~ 491 (598)
.+. . ..|+.. +.. .+-..+..++.++.| .+|.|+++++++++++|++.+..||++..-.
T Consensus 432 ~R~-~--dlf~~~~~v~i---~R~~~kglkgvENVy--tQH~P~lk~~l~~~~rgRl~~~~~p~l~~~~----------- 492 (549)
T KOG1299|consen 432 VRQ-G--DLFGPNDLVPI---ARRFIKGLKGVENVY--TQHQPLLKSTLEDLFRGRLKEIDYPFLGSQT----------- 492 (549)
T ss_pred ccc-c--cccCcchhHHH---HHHHhhccCcchhhh--hccCHHHHHHHHHHHhcccccCCCccccccc-----------
Confidence 422 1 123221 111 111123344566665 5999999999999999999988899874210
Q ss_pred CCCCcccccccCCCCCcccCCCCCCCCCCccccccccccccccCCCeEEEEEEcCCCHHHHHHHHHHHhh-CCCeEEEcc
Q 007570 492 TNEVPAAHSMRSRRTPTWARPRSSDDGYSSDSVLKHASSDFKKMGQRIFVFIVGGTTRSELRVCHKLTAK-LNREVVLGS 570 (598)
Q Consensus 492 ~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~viVFviGGvTy~Ei~al~~L~~~-~~~~iiigs 570 (598)
.+.+++.|||||+||+||+|.|.++++..+ .|.++++|+
T Consensus 493 ----------------------------------------s~~~pq~IIVfivGGaTYEEa~~V~~~N~tn~g~rvvLgG 532 (549)
T KOG1299|consen 493 ----------------------------------------SRDRPQDIIVFIVGGATYEEARVVHELNATNPGVRVVLGG 532 (549)
T ss_pred ----------------------------------------ccCCCceEEEEEECCccHHHHHHHHHHhcCCCceEEEEcc
Confidence 013578999999999999999999999764 589999999
Q ss_pred CcccChhHHHHHHhcc
Q 007570 571 SSLDDPPQFITKLKML 586 (598)
Q Consensus 571 T~il~~~~fl~~l~~l 586 (598)
|.|+|.+.|++++...
T Consensus 533 ttvlntk~f~~di~~a 548 (549)
T KOG1299|consen 533 TTVLNTKSFIDEIMAA 548 (549)
T ss_pred eEEechHHHHHHHhcc
Confidence 9999999999998653
No 4
>KOG1302 consensus Vacuolar sorting protein VPS33/slp1 (Sec1 family) [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=2.1e-73 Score=600.33 Aligned_cols=488 Identities=19% Similarity=0.304 Sum_probs=386.6
Q ss_pred EEEEEeCCHHHHHHHHHhhcC--CCCCcceEEEEecCCCCH--HHHHHHHhCCCccccccceeEEecceeeccCCceEeC
Q 007570 22 LIYCLFCYFCSVVAFLSDMSG--KSPLYKKAFVFFSSPISR--ELVTHIKKDSTVLPRIGALREMNLEYFAVDSQGFVTD 97 (598)
Q Consensus 22 aIY~i~Pt~~si~~i~~d~~~--~~~~Y~~~~i~Ft~~~~~--~~le~la~~~~~~~~i~~i~e~~~dfipld~~lfsl~ 97 (598)
.|||+||+.+|++.|++++++ +...-+.||++| +|+ .+++.+.++.++++.+ .+.|++++++|+|.|++||+
T Consensus 81 ~vy~~Rp~~~~~~~ia~~v~~~~~d~~~r~~~vi~---~P~~~~~c~~~Lee~gv~~~v-~~~e~~~~~lpld~DllSlE 156 (600)
T KOG1302|consen 81 VVYFVRPRLENMQLIAEHVENVQRDGFTRDYHVIF---VPRRSSLCETLLEEEGVYGLV-LVEEQILDLLPLDGDLLSLE 156 (600)
T ss_pred EEEEEcCchHHHHHHHHHHhhhhhchhcceeEEEE---eccHHHHHHHHHHhccccccc-ccchhhhhhccccccchhcc
Confidence 899999999999999999974 234668999999 565 3567887888999777 89999999999999999999
Q ss_pred CchhhhhhcCCCCChhhHHHHHHHHHHHHHHHHHHhCCccEEEEccCCccchhhhhcccchhHHHHHHHHHHHHHHhhhh
Q 007570 98 DERALEELFGDEESSQKADACLNVMATRIATVFASLREFPLVRYRAAKSLDAMTITTFRDLVPTKLAAGVWNCLMKYKQT 177 (598)
Q Consensus 98 ~p~~~~~l~~~~~~~~~~~~~l~~ia~~L~sl~~~lg~~P~Ir~~~~~~~~a~~~~~~~~~v~~~la~~l~~~l~~~~~~ 177 (598)
.|++|.++|.++| .+.+..+|++|.+++.++|.+|.|+..|. .|+++.+++++..++
T Consensus 157 l~~~~~d~~~~gd-----~s~l~~va~~l~~LQ~~~G~ip~v~g~G~------------------~ak~~~~l~~~l~~e 213 (600)
T KOG1302|consen 157 LPNSFLDLYLDGD-----QSSLYHVADALVSLQRLYGIIPKVYGKGE------------------CAKRVWELLKKLERE 213 (600)
T ss_pred chHHHHHHhhccc-----cchhHHHHHHHHHHHHhhCCCcceeeccH------------------HHHHHHHHHHHHhhc
Confidence 9999999999988 77899999999999999999999998887 455555555555432
Q ss_pred cC--CCCC-CCCceEEEecCCCCccchhhhhhhhhHHhhhhcccCCCeEEeeccCC----CC----CCCcceEEecCCCC
Q 007570 178 IQ--NFPM-SETCELLILDRSVDQIAPIIHEWTYDAICHDLLNLEGNKYVHEVPSK----TD----GPPEKKEVLLEEHD 246 (598)
Q Consensus 178 ~~--~~~~-~~~~~LiIlDR~~DliTPLlh~~TYqaLl~dl~~I~~~~v~~~~~~~----~g----~~~~~k~~~l~~~D 246 (598)
.. +.+. .+.+.||++||++|++||||||+||+||+||+|||.+|.|+++.+.. .| +.++.+.+.++..|
T Consensus 214 ~~t~n~~~~~~~~~liLlDR~~D~vtpLlTQltYeGLLDEiy~I~~g~vk~p~~~~~~~q~g~~~~~~~~~~~~l~~~~d 293 (600)
T KOG1302|consen 214 EATENNGDRPEIDHLILLDRDVDPVTPLLTQLTYEGLLDEIYGISSGNVKLPSENFKRNQAGDLGKGKTEKKIVLLYSSD 293 (600)
T ss_pred cccccCCCccccceEEEEeccCcccchhhhHHHHHHHHHHHhhccCCeEecChHHccchhcCCCccCccccceeccCcHH
Confidence 21 1222 35789999999999999999999999999999999999999876421 11 23445667778999
Q ss_pred hhHHHhhcCcHHHHHHHHHHHHHHHHHhhhHhhhhcCCCCCCCCCHHHHHHHHHhchhhHHHHHHHHHHHHHHHHHHHHH
Q 007570 247 PIWVELRHAHIADASERLHEKMTGFVSKNKAAQIQNGSRDGSNLSTRDLQKLVQALPQYSEQIDKLSLHVEIAGKINRII 326 (598)
Q Consensus 247 ~i~~~~R~~~~~~v~~~l~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~v~~lp~~~~~~~~l~~H~~l~~~~~~~i 326 (598)
++|+++|++||+.|+..+++++++++...+ .+.+.++++||++||++||.++++++.++.|+++|+.+++.+
T Consensus 294 eIy~eiR~k~f~~v~~~lsk~ak~l~~~~~--------~r~~~~sV~Eik~FV~~Lp~L~~~~~~l~~H~~lae~i~~~v 365 (600)
T KOG1302|consen 294 EIYAEIRNKHFNAVGPLLSKKAKELQAQYE--------TRRQAMSVAEIKDFVSKLPKLQQRKKSLERHTNLAEMIMQHV 365 (600)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------hhhccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999988654 245688999999999999999999999999999999999999
Q ss_pred HhhhhhHHHHHHHhhhcCCCchHHHHHHhhh--cCCCChhhHHHHHHHHHHhcCCCCChhHH----HHHHHHcCCCHHHH
Q 007570 327 RETGLRELGQLEQDLVFGDAGFKDVIKFLTA--KEDITRENKLRLLMIVASIYPEKFEGEKG----LNLMKLAKLTADDM 400 (598)
Q Consensus 327 ~~~~l~~~~~lEq~i~~~~~~~~~l~~~i~~--~~~~~~~dklRLl~L~~l~~~~g~~~~~~----~~l~q~~gl~~~~~ 400 (598)
....|.+.+.+||+++.|.+..++ .++|++ ....+...+|||+||.|+|. +|++++++ +.++|.||+ +++
T Consensus 366 ~~~~f~~~l~lE~ell~~~d~~k~-~~~IeElI~~~~~~~~vLRLicL~Slt~-~Gl~~k~l~~~rr~~lqsYG~--ehl 441 (600)
T KOG1302|consen 366 KNEDFRKLLKLEHELLEGNDSDKD-FDYIEELIYQEVPLNNVLRLICLLSLTC-NGLKPKDLDHYRREYLQSYGY--EHL 441 (600)
T ss_pred hhHHHHHHHHHHHHHHhccCcccc-hHHHHHHHhhcccHHHHHHHHHHHHHHh-cCCCHHHHHHHHHHHHHhhhH--HHH
Confidence 999999999999999999876544 333332 35799999999999999998 69998764 568899999 999
Q ss_pred HHHHHHHHhcCccccCCccc----C---cCccchhhhhhhhhcc---cCCCCCCcccccccchhHHHHHHHHHhcCCCCC
Q 007570 401 TAVNNMRLLGGALESKKSTI----G---AFSLKFDIHKKKRAAR---KDRSGGEETWQLSRFYPMIEELVEKLGKNELSK 470 (598)
Q Consensus 401 ~~l~~L~~lg~~~~~~~~~~----~---~~~~~f~~~k~~~~~~---~~~~~~~~~y~~s~y~P~i~~lve~~~~~~l~~ 470 (598)
.++.||+++|++..+...+. . .|+.. .++.+.+. .+.+|.|++|+||||+|+++||+|++++...-.
T Consensus 442 ~tl~nL~kaGLl~~q~~~~~~~~~~~~~~~st~---~ntl~l~~~~~d~~~p~DiaYvySgy~PLs~rlve~~l~~~~w~ 518 (600)
T KOG1302|consen 442 LTLQNLEKAGLLREQTGGRKLHTKSSKRNYSTW---ANTLPLVDEENDESNPSDIAYVYSGYAPLSCRLVEDLLKRRGWQ 518 (600)
T ss_pred HHHHHHHHcCCcccccCCCcchhhHHHHHHHHH---HhcCCCcCCcccccCcccchhhhcccccHHHHHHHHHhcccchh
Confidence 99999999999987432210 0 12211 23333333 234689999999999999999999999984333
Q ss_pred CCCCcccCCCCCCCCCCCCCcCCCCcccccccCCCCCcccCCCCCCCCCCccccccccccccccCCCeEEEEEEcCCCHH
Q 007570 471 DDYPCMNDPSPTFHGTTPSALTNEVPAAHSMRSRRTPTWARPRSSDDGYSSDSVLKHASSDFKKMGQRIFVFIVGGTTRS 550 (598)
Q Consensus 471 ~~~p~i~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~viVFviGGvTy~ 550 (598)
+.|-.+...+ |..+.. .+|.... ..+ ++-.+ ...+.++|||+||+||+
T Consensus 519 ~~~~~i~~l~----g~~~e~----------------~~~~~~~-----~~~----~~~~~---g~~R~~lVff~GG~T~~ 566 (600)
T KOG1302|consen 519 ELYSKIRNLP----GPHFEE----------------VTWTPSD-----IAS----KNNSP---GALRVTLVFFLGGCTYA 566 (600)
T ss_pred hhHHHHccCC----CCchhh----------------cccChhh-----hcc----cccCC---CCcceEEEEEECCccHH
Confidence 3342232111 110000 0111000 000 00000 14688999999999999
Q ss_pred HHHHHHHHHhhCCCeEEEccCcccChhHHHHHH
Q 007570 551 ELRVCHKLTAKLNREVVLGSSSLDDPPQFITKL 583 (598)
Q Consensus 551 Ei~al~~L~~~~~~~iiigsT~il~~~~fl~~l 583 (598)
||||+|+|++..|++|+|+||+++|+.++|+.+
T Consensus 567 EIAalr~l~~~~~~~f~i~Tt~ling~~ll~~~ 599 (600)
T KOG1302|consen 567 EIAALRFLAKLEGYRFLIATTGLINGSSLLEAI 599 (600)
T ss_pred HHHHHHHHHhhcCceEEEEeccccchHHHHHhh
Confidence 999999999999999999999999999999876
No 5
>COG5158 SEC1 Proteins involved in synaptic transmission and general secretion, Sec1 family [Intracellular trafficking and secretion]
Probab=100.00 E-value=3.1e-72 Score=601.82 Aligned_cols=501 Identities=23% Similarity=0.368 Sum_probs=384.9
Q ss_pred EEEEEeCCHHHHHHHHHhhcCCCCCcceEEEEecCCCCHHHHHHHHhCCCccccccceeEEecceeeccCCceEeCCchh
Q 007570 22 LIYCLFCYFCSVVAFLSDMSGKSPLYKKAFVFFSSPISRELVTHIKKDSTVLPRIGALREMNLEYFAVDSQGFVTDDERA 101 (598)
Q Consensus 22 aIY~i~Pt~~si~~i~~d~~~~~~~Y~~~~i~Ft~~~~~~~le~la~~~~~~~~i~~i~e~~~dfipld~~lfsl~~p~~ 101 (598)
|||||+||.+|+++|++|+.+..|.|..||+.|++.++..++|.+++ .+....|.+|.++++||+++++++|++++|..
T Consensus 70 aiy~v~pt~e~i~~i~~D~~~~~~~Y~~~~~~f~~~~~~~l~e~l~e-s~~~~~i~~V~e~~ldf~~le~dlfsl~~p~~ 148 (582)
T COG5158 70 AIYFVRPTKENIDLILEDLEQWDPFYLNYHISFLNTVTESLLELLAE-SGVFEKILSVYEIYLDFFVLESDLFSLNLPES 148 (582)
T ss_pred EEEEEcCchHHHHHHHHHHhccCccccceeEEecccchHHHHHHHhh-cCchhheeeeeeeecceEEechHhHhhcCchh
Confidence 99999999999999999998656999999999999999999898885 67788899999999999999999999999999
Q ss_pred hhhhcCCCCChhhHHHHHHHHHHHHHHHHHHhCCccEEEEccCCccchhhhhcccchhHHHHHHHHHHHHHHhhhhcCCC
Q 007570 102 LEELFGDEESSQKADACLNVMATRIATVFASLREFPLVRYRAAKSLDAMTITTFRDLVPTKLAAGVWNCLMKYKQTIQNF 181 (598)
Q Consensus 102 ~~~l~~~~~~~~~~~~~l~~ia~~L~sl~~~lg~~P~Ir~~~~~~~~a~~~~~~~~~v~~~la~~l~~~l~~~~~~~~~~ 181 (598)
|...+.+.. ...+-.|+.||+++|.++|.+|.|||.+++ .|.++|+.+...+........++
T Consensus 149 ~~~~~~~~~-----~~~~~~~v~gl~S~~~slg~~P~Ir~~~~~-------------~a~~~ak~l~~~~~~~~~~~~~~ 210 (582)
T COG5158 149 FLESSLPST-----TEALIKIVNGLFSLCVSLGRIPIIRYSGGK-------------NAEHMAKKLSDEIRNELSINFDG 210 (582)
T ss_pred hhhhcCCCc-----hHHHHHHHhhHHHHHhhcCCcceEEecCCc-------------hHHHHHHHHHHHHHHHHHhhccc
Confidence 988888653 234449999999999999999999998763 34555555544444322222222
Q ss_pred CC---CCCceEEEecCCCCccchhhhhhhhhHHhhhhcccCCCeEEeeccCCCCCCCcceEEecCCCChhHHHhhcCcHH
Q 007570 182 PM---SETCELLILDRSVDQIAPIIHEWTYDAICHDLLNLEGNKYVHEVPSKTDGPPEKKEVLLEEHDPIWVELRHAHIA 258 (598)
Q Consensus 182 ~~---~~~~~LiIlDR~~DliTPLlh~~TYqaLl~dl~~I~~~~v~~~~~~~~g~~~~~k~~~l~~~D~i~~~~R~~~~~ 258 (598)
+. +.+++|||+||+.|++|||+|+||||||+||+++|++|.|+++.....| .+++...++.+|++|.++||+||+
T Consensus 211 ~~~~~~~~~~LIIlDRs~D~iTPlLh~wTYqaml~Dl~~~~~~~v~~~~~~~~g--~~kk~~~~~~~D~~w~~~k~~~f~ 288 (582)
T COG5158 211 VVSKNPLRPILIILDRSLDPITPLLHQWTYQAMLHDLLGINNNIVTIPSSSVNG--PEKKFSLSDKDDPFWNDNKFLNFG 288 (582)
T ss_pred ccccCCCCceEEEEecCCCcccchHHHHHHHHHHHHHHHhhcCeEEeccccccc--ccceeccCCcccHhHHHhccCchh
Confidence 11 2479999999999999999999999999999999999999997654444 445555667899999999999999
Q ss_pred HHHHHHHHHHHHHHHhhhHhhhhcCCCCCCCCCHHHHHHHHHhchhhHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHH
Q 007570 259 DASERLHEKMTGFVSKNKAAQIQNGSRDGSNLSTRDLQKLVQALPQYSEQIDKLSLHVEIAGKINRIIRETGLRELGQLE 338 (598)
Q Consensus 259 ~v~~~l~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~v~~lp~~~~~~~~l~~H~~l~~~~~~~i~~~~l~~~~~lE 338 (598)
+|++.|.+.+++|+.+++ .+. ..+..++.||++||.+||+++++++.+.+|++|+++|++.+++++|+++.++|
T Consensus 289 ~v~e~l~~~~~~l~~~~~--~~~----~~~~~s~~dik~~v~~lpel~~~~~~l~~H~~l~~e~l~~~~~~~l~~f~eIE 362 (582)
T COG5158 289 EVGEKLKKLAKELKTKAQ--LRH----KENAKSVNDIKEFVDKLPELQKRSRSLNKHLTLASELLKVVEERYLDDFSEIE 362 (582)
T ss_pred hHHHHHHHHHHHHHHHHh--hhh----hhhcccHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999988654 332 12346999999999999999999999999999999999999999999999999
Q ss_pred HhhhcCCCchHHHHHHhhhc-CCCChhhHHHHHHHHHHhcCCCC-ChhHHHHHHHHcCCCHHHHHHHHHHHHhcCccccC
Q 007570 339 QDLVFGDAGFKDVIKFLTAK-EDITRENKLRLLMIVASIYPEKF-EGEKGLNLMKLAKLTADDMTAVNNMRLLGGALESK 416 (598)
Q Consensus 339 q~i~~~~~~~~~l~~~i~~~-~~~~~~dklRLl~L~~l~~~~g~-~~~~~~~l~q~~gl~~~~~~~l~~L~~lg~~~~~~ 416 (598)
|++.++.+...++.++|... ......+||||+|||+++. +|+ .+.+..+++..-|++.+++..+.+|+.+|....+.
T Consensus 363 q~l~~~~~~~~~i~Dli~~l~~~~~E~~klRllilysL~~-~~~~~~~~~~~~l~~~~~~~e~~~~~~~l~~~~~~~~~~ 441 (582)
T COG5158 363 QNLSTGNDVKSDISDLIELLESGVEEDDKLRLLILYSLTK-DGLIKDIDELRLLRIQGYGIEALNFFQRLKELGFLTLKD 441 (582)
T ss_pred HhhhcCCcchhhHHHHHHHHhcCchHHHHHHHHHHHHHhc-CcchhHHHHHHHHHhcCCCHHHHHHHHHHHHHhhhhhhc
Confidence 99998875433444444321 2233336999999999997 563 33345566667788889999999999999874422
Q ss_pred Cccc----CcCccchhhhhhhhhcccCCCCCCcccccccchhHHHHHHHHHhcCCCCCCCCCcccCCCCCCCCCCCCCcC
Q 007570 417 KSTI----GAFSLKFDIHKKKRAARKDRSGGEETWQLSRFYPMIEELVEKLGKNELSKDDYPCMNDPSPTFHGTTPSALT 492 (598)
Q Consensus 417 ~~~~----~~~~~~f~~~k~~~~~~~~~~~~~~~y~~s~y~P~i~~lve~~~~~~l~~~~~p~i~~~~~~~~~~~~~~~~ 492 (598)
.... +.-...|.........+......+..+++++|.|..+++...+..+++.+..+..+..
T Consensus 442 ~~~~s~~~g~~d~l~~~~n~y~~s~~~~~~~~~~~v~~~~iP~~k~~~~~~~~~~~~~~~~s~~~~-------------- 507 (582)
T COG5158 442 SKTISLKRGDKDSLFQWFNTYSLSREHQGVPDLENVYSGLIPLKKDIPIDLLVRRLFEPLKSSQQQ-------------- 507 (582)
T ss_pred ccccccccCCcccccCcccccccccccCCCchHHHHHHhhcchhcccchhhhhhhhcccccchhcc--------------
Confidence 1110 1100011100000100001234567888999999999999999998765444432220
Q ss_pred CCCcccccccCCCCCcccCCCCCCCCCCccccccccccccccCCCeEEEEEEcCCCHHHHHHHHHHHhhCC-CeEEEccC
Q 007570 493 NEVPAAHSMRSRRTPTWARPRSSDDGYSSDSVLKHASSDFKKMGQRIFVFIVGGTTRSELRVCHKLTAKLN-REVVLGSS 571 (598)
Q Consensus 493 ~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~viVFviGGvTy~Ei~al~~L~~~~~-~~iiigsT 571 (598)
|.+..+ +.| +.+.. ....+++++|||+||+||.|++++++++.+.+ ++|++|||
T Consensus 508 -------s~~~~~-~k~-~~~~~----------------~~~~~~~~~VfviGG~ty~E~~~~~e~~~~~~~~~ii~Gst 562 (582)
T COG5158 508 -------SLRLSR-PKG-RSRSN----------------KKIPQQRILVFVIGGVTYEELRVLYELNESQNSVRIIYGST 562 (582)
T ss_pred -------ceeecc-ccc-ccccc----------------cccccceEEEEEECCeehHHHHHHHHHHhhcCCeeEEEcCC
Confidence 122111 112 11110 11357899999999999999999999999988 99999999
Q ss_pred cccChhHHHHHHhccCCC
Q 007570 572 SLDDPPQFITKLKMLTAH 589 (598)
Q Consensus 572 ~il~~~~fl~~l~~l~~~ 589 (598)
.|+||.+||+++..++..
T Consensus 563 ~iltp~e~l~~v~~~~~~ 580 (582)
T COG5158 563 EILTPAEFLDEVKRLGGS 580 (582)
T ss_pred ceecHHHHHHHHHHhccc
Confidence 999999999999988753
No 6
>KOG1301 consensus Vesicle trafficking protein Sly1 (Sec1 family) [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=2.9e-71 Score=569.19 Aligned_cols=509 Identities=22% Similarity=0.334 Sum_probs=397.5
Q ss_pred hhhhhhccccee-------------EEEEEeCCHHHHHHHHHhhcCCCCCcceEEEEecCCCCHHHHHHHHh---CCCcc
Q 007570 10 SLCMHVCVLLHM-------------LIYCLFCYFCSVVAFLSDMSGKSPLYKKAFVFFSSPISRELVTHIKK---DSTVL 73 (598)
Q Consensus 10 ~~~~~~~~~~~~-------------aIY~i~Pt~~si~~i~~d~~~~~~~Y~~~~i~Ft~~~~~~~le~la~---~~~~~ 73 (598)
.-+++.||+.|. |||||+||.||+++|++|+++ .+|.+||++|++++|+..+|.||. +.|..
T Consensus 61 keLRe~GvTlH~li~~dR~Pi~DVPAVYFV~Pt~eNid~i~~Dl~~--~lY~~~ylNF~Ssi~R~~LE~lA~~a~~~g~v 138 (621)
T KOG1301|consen 61 KELREHGITLHLLITSDRDPIPDVPAVYFVSPTEENIDRIIQDLSK--GLYDSYYLNFISSISRSLLEDLASAASETGAV 138 (621)
T ss_pred HHHHhcCcEEEEeeccccCCCCCCCeEEEeCCchHhHHHHHHHHHH--hhhhhheeeccccccHHHHHHHHHHHhhcchH
Confidence 667789999998 999999999999999999975 799999999999999999999984 46888
Q ss_pred ccccceeEEecceeeccCCceEeCCchhhhhhcCCCCChhhHHHHHHHHHHHHHHHHHHhCCccEEEEccCCccchhhhh
Q 007570 74 PRIGALREMNLEYFAVDSQGFVTDDERALEELFGDEESSQKADACLNVMATRIATVFASLREFPLVRYRAAKSLDAMTIT 153 (598)
Q Consensus 74 ~~i~~i~e~~~dfipld~~lfsl~~p~~~~~l~~~~~~~~~~~~~l~~ia~~L~sl~~~lg~~P~Ir~~~~~~~~a~~~~ 153 (598)
.+|+.|++.++||+.+++|+|+|.++.+|..+..++..+...+..+++||+||+++|.++|.+|.|||-.+ .+
T Consensus 139 ~~I~kVyDQYlnFI~LEddlFsL~~~~~~~~~n~p~t~e~ei~~~~~~IvdgLF~v~vTlG~VPiIRcp~g--~a----- 211 (621)
T KOG1301|consen 139 LQIHKVYDQYLNFIVLEDDLFSLGMQNSFHAINRPSTTEEEINALMDRIVDGLFSVFVTLGEVPIIRCPKG--GA----- 211 (621)
T ss_pred HHHHHHHHhHhhheeecchhhhhcccccchhccCCCchHHHHHHHHHHHHHHHHHHheecccceeEECCCC--CH-----
Confidence 99999999999999999999999999999888888777777889999999999999999999999998322 23
Q ss_pred cccchhHHHHHHHHHHHHHHhhhhcCCC----CCCCCceEEEecCCCCccchhhhhhhhhHHhhhhcccCCCeEEeeccC
Q 007570 154 TFRDLVPTKLAAGVWNCLMKYKQTIQNF----PMSETCELLILDRSVDQIAPIIHEWTYDAICHDLLNLEGNKYVHEVPS 229 (598)
Q Consensus 154 ~~~~~v~~~la~~l~~~l~~~~~~~~~~----~~~~~~~LiIlDR~~DliTPLlh~~TYqaLl~dl~~I~~~~v~~~~~~ 229 (598)
.++||+++-+++++.+-.-++..... -..++|+|+|+||++|++||+-|.||||||+||+|+.+.|.|+++.+.
T Consensus 212 --AEmvA~kL~qKLRd~l~d~k~~lft~~~~~~~~~RPvLvl~DRn~Dlat~l~HtWtYqaLvhDvl~l~lN~vtv~~~~ 289 (621)
T KOG1301|consen 212 --AEMVARKLDQKLRDNLRDTKNNLFTMDGGGAGFQRPVLVLLDRNIDLATPLHHTWTYQALVHDVLDLELNRVTLESES 289 (621)
T ss_pred --HHHHHHHHHHHHHHHhHhhcccceeccCcccCCCCceEEEEecccccccccccceehHHHHHHHHhcccceEEeeccc
Confidence 27899999999998887554332111 113589999999999999999999999999999999999999998743
Q ss_pred CCCCCCcceEEecCCCChhHHHhhcCcHHHHHHHHHHHHHHHHHhhhHhhhhc--CC---CC---CCCCCHHHHHHHHHh
Q 007570 230 KTDGPPEKKEVLLEEHDPIWVELRHAHIADASERLHEKMTGFVSKNKAAQIQN--GS---RD---GSNLSTRDLQKLVQA 301 (598)
Q Consensus 230 ~~g~~~~~k~~~l~~~D~i~~~~R~~~~~~v~~~l~~~~~~~~~~~~~~~i~~--~~---~~---~~~~~~~~~~~~v~~ 301 (598)
+ ...+|.++|+.+|+||....+..|++|++.|.+++.+|+.+ .+++++ |- .+ +...+...++++|+.
T Consensus 290 ~---~~~~k~yDld~~D~fW~~n~~~pFP~VAE~Ve~eL~~Yk~~--~~ei~r~~G~sg~~e~~~~~~~Dtt~l~~aV~s 364 (621)
T KOG1301|consen 290 K---RKKKKSYDLDPNDKFWRRNKGSPFPEVAENVEEELESYKNE--EAEIKRKMGLSGEDEGAIDELNDTTKLQSAVSS 364 (621)
T ss_pred c---CCCCccccCCCccHHHHhcCCCCCchHHHHHHHHHHHHHhh--HHHHHhhcCCCcccccccccccchHHHHHHHHH
Confidence 2 23468899999999999999999999999999999999875 446653 21 11 112344589999999
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHhhhcCCCchHHHHHHhhhcCCCChhhHHHHHHHHHHhcCCCC
Q 007570 302 LPQYSEQIDKLSLHVEIAGKINRIIRETGLRELGQLEQDLVFGDAGFKDVIKFLTAKEDITRENKLRLLMIVASIYPEKF 381 (598)
Q Consensus 302 lp~~~~~~~~l~~H~~l~~~~~~~i~~~~l~~~~~lEq~i~~~~~~~~~l~~~i~~~~~~~~~dklRLl~L~~l~~~~g~ 381 (598)
||++.++++.+++|++||.++++.|++|.|+.++++|+++++ ..-...+++.+.+....+++||||++++|.+|. +-.
T Consensus 365 LPEL~ekK~~ID~HtnIatalL~~IkeR~lD~ff~~E~~~~~-~~l~~~~l~~~~~~~~gt~EDkLR~~Ii~~ls~-et~ 442 (621)
T KOG1301|consen 365 LPELTEKKRLIDLHTNIATALLEQIKERKLDDFFEVEKKIMS-TTLDRSLLDILEDGEAGTPEDKLRLFIIYYLST-ETV 442 (621)
T ss_pred hHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhHHHHHhccccc-ccccHHHHHHHhcccCCChHHHHHHHHHHHHhh-ccc
Confidence 999999999999999999999999999999999999999987 333457788887656799999999999999997 455
Q ss_pred ChhHHH---HHHHHcCCCHHHHHHHHHHHHhcCccccCCcccC---cCccchh----------hhhhhhhcccCCCCCCc
Q 007570 382 EGEKGL---NLMKLAKLTADDMTAVNNMRLLGGALESKKSTIG---AFSLKFD----------IHKKKRAARKDRSGGEE 445 (598)
Q Consensus 382 ~~~~~~---~l~q~~gl~~~~~~~l~~L~~lg~~~~~~~~~~~---~~~~~f~----------~~k~~~~~~~~~~~~~~ 445 (598)
+.++.+ ..++..|++.+.++++.+++.+.-.........+ .+-..|. +.--++++ +.+
T Consensus 443 ~~s~le~~e~al~e~~~d~~Al~yvkr~k~~~~~~s~~~~~~~~~t~~~~~~~kl~~qg~~~vm~GVKNLl-----p~~- 516 (621)
T KOG1301|consen 443 PQSDLEAVENALTEAGCDLNALKYVKRLKEITKMSSATSAYSGTTTKIVDLFEKLYSQGSSFVMEGVKNLL-----PKK- 516 (621)
T ss_pred cHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhhcccccccccCCcccHHHHHHHHhhccHHHHHhhHHhcC-----ccc-
Confidence 555554 4567788877777777776544332211100000 1001111 00011111 111
Q ss_pred ccccccchhHHHHHHHHHhcCCC--CCCCCCcccCCCCCCCCCCCCCcCCCCcccccccCCCCCcccCCCCCCCCCCccc
Q 007570 446 TWQLSRFYPMIEELVEKLGKNEL--SKDDYPCMNDPSPTFHGTTPSALTNEVPAAHSMRSRRTPTWARPRSSDDGYSSDS 523 (598)
Q Consensus 446 ~y~~s~y~P~i~~lve~~~~~~l--~~~~~p~i~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~s 523 (598)
-.-.+.++||.+...+- ..++|.|++ |+..-++. ++...
T Consensus 517 ------q~lPvT~iveal~~~~sn~etddYl~~D-Pk~~k~~~------------~~~~~-------------------- 557 (621)
T KOG1301|consen 517 ------QNLPVTRIVEALMDPKSNPETDDYLYFD-PKLSKGGS------------SSLPI-------------------- 557 (621)
T ss_pred ------ccCcHHHHHHHhhCCCCCccccceEeec-cccccCCC------------ccccc--------------------
Confidence 11137899999987653 345688774 44221100 01111
Q ss_pred cccccccccccCCCeEEEEEEcCCCHHHHHHHHHHHhhC--CCeEEEccCcccChhHHHHHHhccCCC
Q 007570 524 VLKHASSDFKKMGQRIFVFIVGGTTRSELRVCHKLTAKL--NREVVLGSSSLDDPPQFITKLKMLTAH 589 (598)
Q Consensus 524 ~~~~~~~~~~~~~~~viVFviGGvTy~Ei~al~~L~~~~--~~~iiigsT~il~~~~fl~~l~~l~~~ 589 (598)
.+...++.|||||||++|-|+..|.+++++. .++|++|+|.|+||.+|++++..||..
T Consensus 558 --------~r~~f~eaIVFvVGGGNYiEYqnL~d~~krq~~~krIiYGsTeIln~~eFl~qls~Lg~~ 617 (621)
T KOG1301|consen 558 --------KRQPFQEAIVFVVGGGNYIEYQNLVDLAKRQQTVKRIIYGSTEILNAREFLEQLSRLGLK 617 (621)
T ss_pred --------cccchhheEEEEEcCcCeeehhhHHHHHHhhcccceeEecchhcCCHHHHHHHHHHhccc
Confidence 1135688999999999999999999998865 489999999999999999999998854
No 7
>PF14071 YlbD_coat: Putative coat protein
Probab=57.86 E-value=12 Score=33.12 Aligned_cols=14 Identities=50% Similarity=0.949 Sum_probs=12.4
Q ss_pred EecCCCChhHHHhh
Q 007570 240 VLLEEHDPIWVELR 253 (598)
Q Consensus 240 ~~l~~~D~i~~~~R 253 (598)
+.|.++|++|..+|
T Consensus 32 ~LlGEdD~~W~~Yk 45 (124)
T PF14071_consen 32 YLLGEDDPIWDPYK 45 (124)
T ss_pred HHhCCCcchHHHhh
Confidence 46789999999999
No 8
>PRK05581 ribulose-phosphate 3-epimerase; Validated
Probab=50.33 E-value=21 Score=34.71 Aligned_cols=44 Identities=18% Similarity=0.457 Sum_probs=33.3
Q ss_pred EEEEEEcCCCHHHHHHHHHHHhhCCCeEEEccCcccChhHHHHHHhcc
Q 007570 539 IFVFIVGGTTRSELRVCHKLTAKLNREVVLGSSSLDDPPQFITKLKML 586 (598)
Q Consensus 539 viVFviGGvTy~Ei~al~~L~~~~~~~iiigsT~il~~~~fl~~l~~l 586 (598)
..|.+.||+|-..++.+.+ .|.++++.++.|++.++....++.+
T Consensus 171 ~~i~v~GGI~~~nv~~l~~----~GaD~vvvgSai~~~~d~~~~~~~~ 214 (220)
T PRK05581 171 ILIEVDGGINADNIKECAE----AGADVFVAGSAVFGAPDYKEAIDSL 214 (220)
T ss_pred ceEEEECCCCHHHHHHHHH----cCCCEEEEChhhhCCCCHHHHHHHH
Confidence 5677899999976666655 6899999999999776665554443
No 9
>PRK08883 ribulose-phosphate 3-epimerase; Provisional
Probab=42.35 E-value=34 Score=33.75 Aligned_cols=45 Identities=16% Similarity=0.289 Sum_probs=32.9
Q ss_pred eEEEEEEcCCCHHHHHHHHHHHhhCCCeEEEccCcccChhHHHHHHhcc
Q 007570 538 RIFVFIVGGTTRSELRVCHKLTAKLNREVVLGSSSLDDPPQFITKLKML 586 (598)
Q Consensus 538 ~viVFviGGvTy~Ei~al~~L~~~~~~~iiigsT~il~~~~fl~~l~~l 586 (598)
.+.|.+.||+|-..++.+.+ .|.++++.++.|+..+++-+.+..+
T Consensus 167 ~~~I~vdGGI~~eni~~l~~----aGAd~vVvGSaIf~~~d~~~~i~~l 211 (220)
T PRK08883 167 DIRLEIDGGVKVDNIREIAE----AGADMFVAGSAIFGQPDYKAVIDEM 211 (220)
T ss_pred CeeEEEECCCCHHHHHHHHH----cCCCEEEEeHHHhCCCCHHHHHHHH
Confidence 47788999999776666554 5899999999998665554444433
No 10
>PLN02334 ribulose-phosphate 3-epimerase
Probab=37.61 E-value=37 Score=33.52 Aligned_cols=44 Identities=16% Similarity=0.280 Sum_probs=33.0
Q ss_pred EEEEEEcCCCHHHHHHHHHHHhhCCCeEEEccCcccChhHHHHHHhcc
Q 007570 539 IFVFIVGGTTRSELRVCHKLTAKLNREVVLGSSSLDDPPQFITKLKML 586 (598)
Q Consensus 539 viVFviGGvTy~Ei~al~~L~~~~~~~iiigsT~il~~~~fl~~l~~l 586 (598)
+-|.++||+|-.-++.+.+ .|.++++.++.|+..++.-+.++.+
T Consensus 175 ~~I~a~GGI~~e~i~~l~~----aGad~vvvgsai~~~~d~~~~~~~l 218 (229)
T PLN02334 175 LDIEVDGGVGPSTIDKAAE----AGANVIVAGSAVFGAPDYAEVISGL 218 (229)
T ss_pred CcEEEeCCCCHHHHHHHHH----cCCCEEEEChHHhCCCCHHHHHHHH
Confidence 4589999999887777665 5888999889999766655444443
No 11
>cd00564 TMP_TenI Thiamine monophosphate synthase (TMP synthase)/TenI. TMP synthase catalyzes an important step in the thiamine biosynthesis pathway, the substitution of the pyrophosphate of 2-methyl-4-amino-5- hydroxymethylpyrimidine pyrophosphate by 4-methyl-5- (beta-hydroxyethyl) thiazole phosphate to yield thiamine phosphate. TenI is a enzymatically inactive regulatory protein involved in the regulation of several extracellular enzymes. This superfamily also contains other enzymatically inactive proteins with unknown functions.
Probab=36.74 E-value=40 Score=31.73 Aligned_cols=45 Identities=18% Similarity=0.125 Sum_probs=32.9
Q ss_pred eEEEEEEcCCCHHHHHHHHHHHhhCCCeEEEccCcccChhHHHHHHhcc
Q 007570 538 RIFVFIVGGTTRSELRVCHKLTAKLNREVVLGSSSLDDPPQFITKLKML 586 (598)
Q Consensus 538 ~viVFviGGvTy~Ei~al~~L~~~~~~~iiigsT~il~~~~fl~~l~~l 586 (598)
.+-|++.||++-..+..+.. .|.+.+..++.++..++....+..+
T Consensus 150 ~~pv~a~GGi~~~~i~~~~~----~Ga~~i~~g~~i~~~~~~~~~~~~l 194 (196)
T cd00564 150 EIPVVAIGGITPENAAEVLA----AGADGVAVISAITGADDPAAAAREL 194 (196)
T ss_pred CCCEEEECCCCHHHHHHHHH----cCCCEEEEehHhhcCCCHHHHHHHH
Confidence 35689999999766665554 5889998888898766666655544
No 12
>PRK00043 thiE thiamine-phosphate pyrophosphorylase; Reviewed
Probab=31.87 E-value=51 Score=31.69 Aligned_cols=43 Identities=14% Similarity=0.108 Sum_probs=31.2
Q ss_pred EEEEEEcCCCHHHHHHHHHHHhhCCCeEEEccCcccChhHHHHHHhc
Q 007570 539 IFVFIVGGTTRSELRVCHKLTAKLNREVVLGSSSLDDPPQFITKLKM 585 (598)
Q Consensus 539 viVFviGGvTy~Ei~al~~L~~~~~~~iiigsT~il~~~~fl~~l~~ 585 (598)
+-|++.||+|-..++.+.. .|.+.+++++.|.+.++..+.+..
T Consensus 161 ~~v~a~GGI~~~~i~~~~~----~Ga~gv~~gs~i~~~~d~~~~~~~ 203 (212)
T PRK00043 161 IPIVAIGGITPENAPEVLE----AGADGVAVVSAITGAEDPEAAARA 203 (212)
T ss_pred CCEEEECCcCHHHHHHHHH----cCCCEEEEeHHhhcCCCHHHHHHH
Confidence 6789999999766665544 588999988999876555444443
No 13
>TIGR01163 rpe ribulose-phosphate 3-epimerase. This family consists of Ribulose-phosphate 3-epimerase, also known as pentose-5-phosphate 3-epimerase (PPE). PPE converts D-ribulose 5-phosphate into D-xylulose 5-phosphate in Calvin's reductive pentose phosphate cycle. It has been found in a wide range of bacteria, archebacteria, fungi and plants.
Probab=29.31 E-value=74 Score=30.49 Aligned_cols=44 Identities=14% Similarity=0.370 Sum_probs=32.2
Q ss_pred EEEEEEcCCCHHHHHHHHHHHhhCCCeEEEccCcccChhHHHHHHhcc
Q 007570 539 IFVFIVGGTTRSELRVCHKLTAKLNREVVLGSSSLDDPPQFITKLKML 586 (598)
Q Consensus 539 viVFviGGvTy~Ei~al~~L~~~~~~~iiigsT~il~~~~fl~~l~~l 586 (598)
+-|++.||+|-.- +.++. +.|.+.++.++.|+++.+.-..++.+
T Consensus 166 ~~i~v~GGI~~en---v~~l~-~~gad~iivgsai~~~~d~~~~~~~~ 209 (210)
T TIGR01163 166 ILIEVDGGVNDDN---ARELA-EAGADILVAGSAIFGADDYKEVIRSL 209 (210)
T ss_pred ceEEEECCcCHHH---HHHHH-HcCCCEEEEChHHhCCCCHHHHHHHh
Confidence 5578999999644 44443 46889999999999877766665543
No 14
>TIGR00693 thiE thiamine-phosphate pyrophosphorylase. This model includes ThiE from Bacillus subtilis but excludes its paralog, the regulatory protein TenI, and neighbors of TenI.
Probab=25.72 E-value=84 Score=29.87 Aligned_cols=42 Identities=17% Similarity=0.093 Sum_probs=31.1
Q ss_pred EEEEEEcCCCHHHHHHHHHHHhhCCCeEEEccCcccChhHHHHHHh
Q 007570 539 IFVFIVGGTTRSELRVCHKLTAKLNREVVLGSSSLDDPPQFITKLK 584 (598)
Q Consensus 539 viVFviGGvTy~Ei~al~~L~~~~~~~iiigsT~il~~~~fl~~l~ 584 (598)
+-|+.+||+|-..++.+. +.|.+.+..++.|+..++-...+.
T Consensus 153 ~pv~a~GGI~~~~~~~~~----~~G~~gva~~~~i~~~~dp~~~~~ 194 (196)
T TIGR00693 153 IPIVAIGGITLENAAEVL----AAGADGVAVVSAIMQAADPKAAAK 194 (196)
T ss_pred CCEEEECCcCHHHHHHHH----HcCCCEEEEhHHhhCCCCHHHHHH
Confidence 458999999976665554 358999999999987766554444
No 15
>PF12327 FtsZ_C: FtsZ family, C-terminal domain; InterPro: IPR024757 The FtsZ family of proteins are involved in polymer formation. FtsZ is the polymer-forming protein of bacterial cell division. It is part of a ring in the middle of the dividing cell that is required for constriction of cell membrane and cell envelope to yield two daughter cells. FtsZ is a GTPase, like tubulin []. FtsZ can polymerise into tubes, sheets, and rings in vitro and is ubiquitous in eubacteria and archaea []. This entry represents a domain of FtsZ. In most FtsZ proteins is found in the C terminus, except in some alphaproteobacteria proteins where there is an extension C-terminal domain TIGR03483 from TIGRFAMs.; PDB: 2RHO_B 2RHJ_A 2VXY_A 2RHL_B 2RHH_A 2VAM_A 1W5F_B 2R75_1 2R6R_1 1RQ7_A ....
Probab=24.36 E-value=1.3e+02 Score=25.39 Aligned_cols=37 Identities=24% Similarity=0.425 Sum_probs=26.2
Q ss_pred CCCeEEEEEEcC--CCHHHHHHHHHH-HhhC--CCeEEEccC
Q 007570 535 MGQRIFVFIVGG--TTRSELRVCHKL-TAKL--NREVVLGSS 571 (598)
Q Consensus 535 ~~~~viVFviGG--vTy~Ei~al~~L-~~~~--~~~iiigsT 571 (598)
.-++++|-|.|| +|+.|+..+-+. .+.. +.+|+.|.+
T Consensus 35 ~A~~vLvni~~~~d~~l~ev~~~~~~i~~~~~~~a~ii~G~~ 76 (95)
T PF12327_consen 35 GAKGVLVNITGGPDLSLSEVNEAMEIIREKADPDANIIWGAS 76 (95)
T ss_dssp G-SEEEEEEEE-TTS-HHHHHHHHHHHHHHSSTTSEEEEEEE
T ss_pred HhceEEEEEEcCCCCCHHHHHHHHHHHHHHhhcCceEEEEEE
Confidence 357899999998 789999877654 4443 588998865
No 16
>PTZ00170 D-ribulose-5-phosphate 3-epimerase; Provisional
Probab=23.14 E-value=94 Score=30.71 Aligned_cols=44 Identities=11% Similarity=0.240 Sum_probs=32.5
Q ss_pred eEEEEEEcCCCHHHHHHHHHHHhhCCCeEEEccCcccChhHHHHHHhc
Q 007570 538 RIFVFIVGGTTRSELRVCHKLTAKLNREVVLGSSSLDDPPQFITKLKM 585 (598)
Q Consensus 538 ~viVFviGGvTy~Ei~al~~L~~~~~~~iiigsT~il~~~~fl~~l~~ 585 (598)
.+.|-|-||+|-..+..+.+ .|.+++|.++.|+..++..+.+..
T Consensus 173 ~~~I~VdGGI~~~ti~~~~~----aGad~iVvGsaI~~a~d~~~~~~~ 216 (228)
T PTZ00170 173 HLNIQVDGGINLETIDIAAD----AGANVIVAGSSIFKAKDRKQAIEL 216 (228)
T ss_pred cCeEEECCCCCHHHHHHHHH----cCCCEEEEchHHhCCCCHHHHHHH
Confidence 46688999999987766655 488999999999866555444433
No 17
>cd00429 RPE Ribulose-5-phosphate 3-epimerase (RPE). This enzyme catalyses the interconversion of D-ribulose 5-phosphate (Ru5P) into D-xylulose 5-phosphate, as part of the Calvin cycle (reductive pentose phosphate pathway) in chloroplasts and in the oxidative pentose phosphate pathway. In the Calvin cycle Ru5P is phosphorylated by phosphoribulose kinase to ribulose-1,5-bisphosphate, which in turn is used by RubisCO (ribulose-1,5-bisphosphate carboxylase/oxygenase) to incorporate CO2 as the central step in carbohydrate synthesis.
Probab=21.95 E-value=1.3e+02 Score=28.74 Aligned_cols=43 Identities=14% Similarity=0.298 Sum_probs=31.3
Q ss_pred EEEEEEcCCCHHHHHHHHHHHhhCCCeEEEccCcccChhHHHHHHhc
Q 007570 539 IFVFIVGGTTRSELRVCHKLTAKLNREVVLGSSSLDDPPQFITKLKM 585 (598)
Q Consensus 539 viVFviGGvTy~Ei~al~~L~~~~~~~iiigsT~il~~~~fl~~l~~ 585 (598)
+-|++.||+|-.-++.+. +.|.+.++.++.+++.++....++.
T Consensus 167 ~pi~v~GGI~~env~~~~----~~gad~iivgsai~~~~~~~~~~~~ 209 (211)
T cd00429 167 LLIEVDGGINLETIPLLA----EAGADVLVAGSALFGSDDYAEAIKE 209 (211)
T ss_pred eEEEEECCCCHHHHHHHH----HcCCCEEEECHHHhCCCCHHHHHHH
Confidence 567899999975544433 3578999999999987776665554
No 18
>PRK08745 ribulose-phosphate 3-epimerase; Provisional
Probab=21.92 E-value=1.4e+02 Score=29.44 Aligned_cols=45 Identities=13% Similarity=0.259 Sum_probs=33.5
Q ss_pred CeEEEEEEcCCCHHHHHHHHHHHhhCCCeEEEccCcccChhHHHHHHhc
Q 007570 537 QRIFVFIVGGTTRSELRVCHKLTAKLNREVVLGSSSLDDPPQFITKLKM 585 (598)
Q Consensus 537 ~~viVFviGGvTy~Ei~al~~L~~~~~~~iiigsT~il~~~~fl~~l~~ 585 (598)
..+.|-|=||++-.-++.+.+ .|.+++|.|+.|+..++.-+.+..
T Consensus 170 ~~~~IeVDGGI~~eti~~l~~----aGaDi~V~GSaiF~~~d~~~~~~~ 214 (223)
T PRK08745 170 KPIRLEIDGGVKADNIGAIAA----AGADTFVAGSAIFNAPDYAQVIAQ 214 (223)
T ss_pred CCeeEEEECCCCHHHHHHHHH----cCCCEEEEChhhhCCCCHHHHHHH
Confidence 357899999999887766655 588999999999865554444433
No 19
>TIGR03128 RuMP_HxlA 3-hexulose-6-phosphate synthase. at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin. In these species, the enzyme is viewed as a lyase rather than a synthase and is called D-arabino 3-hexulose 6-phosphate formaldehyde lyase. Note that there is some overlap in specificity with the Escherichia coli enzyme 3-keto-L-gulonate 6-phosphate decarboxylase.
Probab=21.49 E-value=1.2e+02 Score=29.04 Aligned_cols=42 Identities=14% Similarity=0.197 Sum_probs=29.2
Q ss_pred eEEEEEEcCCCHHHHHHHHHHHhhCCCeEEEccCcccChhHHHHHH
Q 007570 538 RIFVFIVGGTTRSELRVCHKLTAKLNREVVLGSSSLDDPPQFITKL 583 (598)
Q Consensus 538 ~viVFviGGvTy~Ei~al~~L~~~~~~~iiigsT~il~~~~fl~~l 583 (598)
.+.|.+.||+|..-+..+. +.|.+.++.++.|++.++.-+.+
T Consensus 158 ~~~i~v~GGI~~~n~~~~~----~~Ga~~v~vGsai~~~~d~~~~~ 199 (206)
T TIGR03128 158 EARVAVAGGINLDTIPDVI----KLGPDIVIVGGAITKAADPAEAA 199 (206)
T ss_pred CCcEEEECCcCHHHHHHHH----HcCCCEEEEeehhcCCCCHHHHH
Confidence 3456779999987766553 36889888888898754443333
Done!