Query 007570
Match_columns 598
No_of_seqs 128 out of 963
Neff 8.0
Searched_HMMs 29240
Date Mon Mar 25 05:03:54 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007570.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/007570hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1dn1_A NSEC1, syntaxin binding 100.0 1.8E-95 6E-100 813.2 43.6 525 1-590 33-589 (594)
2 3puk_A Syntaxin-binding protei 100.0 4E-94 1.4E-98 802.0 35.0 516 1-590 37-584 (592)
3 2xhe_A UNC18; exocytosis, exoc 100.0 1.5E-92 5E-97 800.9 48.1 554 1-590 30-619 (650)
4 1epu_A S-SEC1; parallel beta-s 100.0 2E-92 7E-97 794.1 46.6 528 1-588 30-590 (591)
5 3c98_A Syntaxin-binding protei 100.0 7.4E-92 2.5E-96 791.3 43.2 525 1-590 45-601 (606)
6 1mqs_A SLY1 protein, SLY1P; SM 100.0 2E-82 7E-87 719.8 36.3 528 1-591 63-666 (671)
7 1y9j_A SEC1 family domain cont 99.4 4.2E-14 1.4E-18 129.5 3.9 83 1-85 55-159 (159)
8 3he4_B Synzip5; heterodimeric 41.2 74 0.0025 20.9 5.3 33 290-322 3-35 (46)
9 1tqx_A D-ribulose-5-phosphate 21.8 58 0.002 30.8 3.4 37 538-578 173-209 (227)
10 1y0e_A Putative N-acetylmannos 21.2 77 0.0026 29.3 4.2 45 538-586 175-220 (223)
No 1
>1dn1_A NSEC1, syntaxin binding protein 1; protein-protein complex, multi-subunit; 2.60A {Rattus norvegicus} PDB: 3puj_A 3c98_A
Probab=100.00 E-value=1.8e-95 Score=813.15 Aligned_cols=525 Identities=27% Similarity=0.495 Sum_probs=426.7
Q ss_pred CCCCCchhhhhhhhhc------cccee-------------EEEEEeCCHHHHHHHHHhhcC-CCCCcceEEEEecCCCCH
Q 007570 1 MDETSLSPFSLCMHVC------VLLHM-------------LIYCLFCYFCSVVAFLSDMSG-KSPLYKKAFVFFSSPISR 60 (598)
Q Consensus 1 ~~~~~~~~~~~~~~~~------~~~~~-------------aIY~i~Pt~~si~~i~~d~~~-~~~~Y~~~~i~Ft~~~~~ 60 (598)
||+.+.++|++||+.+ |+.+. |||||+||.+||++|++||+. ..|+|++|||||++.+|+
T Consensus 33 lD~~t~~ils~~~~~s~Ll~~gVtlve~i~~~R~~~~~~~aIYfv~Pt~~ni~~i~~d~~~~~~~~Y~~y~i~Ft~~~~~ 112 (594)
T 1dn1_A 33 VDQLSMRMLSSCCKMTDIMTEGITIVEDINKRREPLPSLEAVYLITPSEKSVHSLISDFKDPPTAKYRAAHVFFTDSCPD 112 (594)
T ss_dssp ECHHHHHHHHHHCCHHHHHTTTEEEEEETTSCCCCCTTSEEEEEECCCHHHHHHHHHTTSSGGGCCCSEEEEEESSCCCH
T ss_pred ECcccHHHHHHHhCHHHHhhCCeEEEEecccccCCCCCCceEEEEeCCHHHHHHHHHHHhcccccccceEEEEeCCCCCH
Confidence 5788889999999864 55554 999999999999999999974 247999999999999999
Q ss_pred HHHHHHHhCCCccccccceeEEecceeeccCCceEeCCchhhhhhcCCCCChhhHHHHHHHHHHHHHHHHHHhCCccEEE
Q 007570 61 ELVTHIKKDSTVLPRIGALREMNLEYFAVDSQGFVTDDERALEELFGDEESSQKADACLNVMATRIATVFASLREFPLVR 140 (598)
Q Consensus 61 ~~le~la~~~~~~~~i~~i~e~~~dfipld~~lfsl~~p~~~~~l~~~~~~~~~~~~~l~~ia~~L~sl~~~lg~~P~Ir 140 (598)
.+++.||+ .++.+.|++|.|+++||+|+|+++|||++|++|..+|.+..+ ......++++|++|+++|.++|.+|.||
T Consensus 113 ~~le~La~-~~~~~~i~~v~e~~ldfiple~dlFsL~~p~~f~~l~~~~~~-~~~~~~l~~ia~~L~sl~~tlg~~P~IR 190 (594)
T 1dn1_A 113 ALFNELVK-SRAAKVIKTLTEINIAFLPYESQVYSLDSADSFQSFYSPHKA-QMKNPILERLAEQIATLCATLKEYPAVR 190 (594)
T ss_dssp HHHHHHHH-SGGGGTEEEEEECCCCSEEEETTEEECCCTTHHHHHHCGGGT-TSHHHHHHHHHHHHHHHHHHHTCCCEEC
T ss_pred HHHHHHHh-cchHhhhcchheeeeeeEEccCCEEEecCcchHHHHhCCccc-ccchHHHHHHHHHHHHHHHHcCCCCEEE
Confidence 99999996 578999999999999999999999999999999999996432 2347789999999999999999999999
Q ss_pred EccCCccchhhhhcccchhHHHHHHHHHHHHHHhhhhcCCCC---CCCCceEEEecCCCCccchhhhhhhhhHHhhhhcc
Q 007570 141 YRAAKSLDAMTITTFRDLVPTKLAAGVWNCLMKYKQTIQNFP---MSETCELLILDRSVDQIAPIIHEWTYDAICHDLLN 217 (598)
Q Consensus 141 ~~~~~~~~a~~~~~~~~~v~~~la~~l~~~l~~~~~~~~~~~---~~~~~~LiIlDR~~DliTPLlh~~TYqaLl~dl~~ 217 (598)
|+|+.. .|+++|+.+++.|.++..+++.++ ..++++|||+||++|++|||+||||||||+||+||
T Consensus 191 y~~~~~------------~~~~lA~~v~~~l~~~~~~~~~~~~~~~~~~~~LiIlDR~~D~vTPLlhq~TYqalv~dll~ 258 (594)
T 1dn1_A 191 YRGEYK------------DNALLAQLIQDKLDAYKADDPTMGEGPDKARSQLLILDRGFDPSSPVLHELTFQAMSYDLLP 258 (594)
T ss_dssp CCTTSH------------HHHHHHHHHHHHHHHHHTTCTTTTCSTTGGGCEEEEEEGGGCSSTTTSCCCBHHHHHHHHSC
T ss_pred ECCCch------------HHHHHHHHHHHHHHHhhccCccccCCCCCCCCeEEEEcCCccccccccccccHHHHHHHHhc
Confidence 987732 367889999988888775544432 23478999999999999999999999999999999
Q ss_pred cCCCeEEeeccCCCCCCCcceEEecCCCChhHHHhhcCcHHHHHHHHHHHHHHHHHhhhHhhhhcCCCCCCCCCHHHHHH
Q 007570 218 LEGNKYVHEVPSKTDGPPEKKEVLLEEHDPIWVELRHAHIADASERLHEKMTGFVSKNKAAQIQNGSRDGSNLSTRDLQK 297 (598)
Q Consensus 218 I~~~~v~~~~~~~~g~~~~~k~~~l~~~D~i~~~~R~~~~~~v~~~l~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ 297 (598)
|++|.|+++.+. .+..+++++.|+++|++|.++||+||++|+..|.+.+++|+++++.. ..+..+++||++
T Consensus 259 I~~n~v~~~~~~--~~~~~~k~~~L~~~D~~~~~~r~~~f~~v~~~l~~~~~~~~~~~~~~-------~~~~~s~~dl~~ 329 (594)
T 1dn1_A 259 IENDVYKYETSG--IGEARVKEVLLDEDDDLWIALRHKHIAEVSQEVTRSLKDFSSSKRMN-------TGEKTTMRDLSQ 329 (594)
T ss_dssp CBTTEEEEEECS--SSSCEEEEEECSTTCHHHHHHTTSBHHHHHHHHHHHHHHHHHHTTC--------------CCSSCC
T ss_pred ccCCEEEecCCC--CCCccceEEecCCCCHHHHHHhccCHHHHHHHHHHHHHHHHHHhhhc-------ccccCCHHHHHH
Confidence 999999998632 12344688999999999999999999999999999999998865421 024567789999
Q ss_pred HHHhchhhHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHhhhcCCCc--------hHHHHHHhhhcCCCChhhHHHH
Q 007570 298 LVQALPQYSEQIDKLSLHVEIAGKINRIIRETGLRELGQLEQDLVFGDAG--------FKDVIKFLTAKEDITRENKLRL 369 (598)
Q Consensus 298 ~v~~lp~~~~~~~~l~~H~~l~~~~~~~i~~~~l~~~~~lEq~i~~~~~~--------~~~l~~~i~~~~~~~~~dklRL 369 (598)
||++||+++++++.+++|++||++|++.+++ .|++++++||++++|.+. .+.+.++|. ++.++..|||||
T Consensus 330 ~v~~lP~~~~~~~~l~~H~~ia~~l~~~~~~-~l~~~~e~EQ~l~~g~d~~~~~~k~~~~~i~~lL~-~~~~~~~dkLRL 407 (594)
T 1dn1_A 330 MLKKMPQYQKELSKYSTHLHLAEDCMKHYQG-TVDKLCRVEQDLAMGTDAEGEKIKDPMRAIVPILL-DANVSTYDKIRI 407 (594)
T ss_dssp TTTTCGGGHHHHHHHHHHHHHHHHHHHHHHT-THHHHHHHHHHHHHSBCSSCCBCCCTHHHHHHHHH-CTTSCHHHHHHH
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHcCCCcccchhHHHHHHHHHHHh-CCCCChHhHHHH
Confidence 9999999999999999999999999999987 899999999999998642 134566776 568999999999
Q ss_pred HHHHHHhcCCCCChhHHHHHHHHcCCCHHHHHHHHHHHHhcCccccCCcccCcCccchhhhhhhhhcccCCCCCCccccc
Q 007570 370 LMIVASIYPEKFEGEKGLNLMKLAKLTADDMTAVNNMRLLGGALESKKSTIGAFSLKFDIHKKKRAARKDRSGGEETWQL 449 (598)
Q Consensus 370 l~L~~l~~~~g~~~~~~~~l~q~~gl~~~~~~~l~~L~~lg~~~~~~~~~~~~~~~~f~~~k~~~~~~~~~~~~~~~y~~ 449 (598)
+|||++++ +|++++++.+|++++|++.+++.++.||+++|+...+... . .|.+.+.++. .+.++.|.+
T Consensus 408 ~~Ly~l~~-~g~~~~~~~~L~~~~~~~~~~~~~i~nl~~lG~~~~~~~~-------~---~k~~~~~~k~-~~~e~~Y~l 475 (594)
T 1dn1_A 408 ILLYIFLK-NGITEENLNKLIQHAQIPPEDSEIITNMAHLGVPIVTDST-------L---RRRSKPERKE-RISEQTYQL 475 (594)
T ss_dssp HHHHHHHT-TCBCHHHHHHHHHHHTCCHHHHHHHHHGGGGTCCCBCCCG-------G---GCCCCCCCCC-CCCSCCCTT
T ss_pred HHHHHHHc-CCCCHHHHHHHHHHcCCCHHHHHHHHHHHHhCCccccccc-------c---cccccccccc-CCCCcccee
Confidence 99999987 6999999999999999999999999999999987543211 0 1112222333 357899999
Q ss_pred ccchhHHHHHHHHHhcCCCCCCCCCcccCCCCCCCCCCCCCcCCCCcccccccCCCCCcccCCCCCCCCCCccccccccc
Q 007570 450 SRFYPMIEELVEKLGKNELSKDDYPCMNDPSPTFHGTTPSALTNEVPAAHSMRSRRTPTWARPRSSDDGYSSDSVLKHAS 529 (598)
Q Consensus 450 s~y~P~i~~lve~~~~~~l~~~~~p~i~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~s~~~~~~ 529 (598)
|||+|++++++|++++|+|++++|||+.++++...+ .+..+.|+++|++.+.+.+
T Consensus 476 sr~~P~l~~ile~~~~~~L~~~~fP~~~~~~~~~~~-------------~~~~s~r~~~w~~~~~~~~------------ 530 (594)
T 1dn1_A 476 SRWTPIIKDIMEDTIEDKLDTKHYPYISTRSSASFS-------------TTAVSARYGHWHKNKAPGE------------ 530 (594)
T ss_dssp CCCCCHHHHHHHHHHTTCSCTTTSCCSSCC--------------------------------------------------
T ss_pred eccchHHHHHHHHHHhCCCCcccCCccCCCCCcccc-------------ccccccccccccccCCccc------------
Confidence 999999999999999999999999999765421100 1112335578987654321
Q ss_pred cccccCCCeEEEEEEcCCCHHHHHHHHHHHhhC-CCeEEEccCcccChhHHHHHHhccCCCC
Q 007570 530 SDFKKMGQRIFVFIVGGTTRSELRVCHKLTAKL-NREVVLGSSSLDDPPQFITKLKMLTAHE 590 (598)
Q Consensus 530 ~~~~~~~~~viVFviGGvTy~Ei~al~~L~~~~-~~~iiigsT~il~~~~fl~~l~~l~~~~ 590 (598)
.+.++++||||+||+||+|+|++|++++.. |++|+||||+|+||++||++|..|++++
T Consensus 531 ---~~~~~riivFivGG~Ty~E~r~~~els~~~~~~~VilG~t~il~p~~Fl~~l~~l~~~~ 589 (594)
T 1dn1_A 531 ---YRSGPRLIIFILGGVSLNEMRCAYEVTQANGKWEVLIGSTHILTPQKLLDTLKKLNKTD 589 (594)
T ss_dssp ----CCCCEEEEEEETCEEHHHHHHHHHHHHHHSSCEEEEEESSEECHHHHHHHHTTTTSCS
T ss_pred ---cccCCcEEEEEeCCccHHHHHHHHHHHhhcCCceEEEeeCCcCCHHHHHHHHHHhCCCc
Confidence 135789999999999999999999999986 4999999999999999999999999765
No 2
>3puk_A Syntaxin-binding protein 3; membrane trafficking, SM protein, snare proteins, binding protein, endocytosis-exocytosis complex; 3.05A {Mus musculus} PDB: 2pjx_A
Probab=100.00 E-value=4e-94 Score=802.01 Aligned_cols=516 Identities=27% Similarity=0.425 Sum_probs=419.0
Q ss_pred CCCCCchhhhhhhhhc------cccee-------------EEEEEeCCHHHHHHHHHhhcCC-CCCcceEEEEecCCCCH
Q 007570 1 MDETSLSPFSLCMHVC------VLLHM-------------LIYCLFCYFCSVVAFLSDMSGK-SPLYKKAFVFFSSPISR 60 (598)
Q Consensus 1 ~~~~~~~~~~~~~~~~------~~~~~-------------aIY~i~Pt~~si~~i~~d~~~~-~~~Y~~~~i~Ft~~~~~ 60 (598)
||+.+.++|++||+.+ |+.+. |||||+||.+||++|++|++.. .++|++|||||++.+|+
T Consensus 37 lD~~t~~ils~~~~~sdLl~~gVtlve~i~~~R~~~~~~~aIYfv~Pt~eni~~i~~dl~~~~~~~Y~~~~i~F~~~~~~ 116 (592)
T 3puk_A 37 LDEFTTKLLSSCCKMTDLLEEGITVIENIYKNREPVRQMKALYFISPTPKSVDCFLRDFGSKSEKKYKAAYIYFTDFCPD 116 (592)
T ss_dssp ECHHHHHHHHHSSCTTGGGGGTEEEEEESSSCCCCBTTSCEEEEECSCHHHHHHHHHHHTGGGCCCBSCEEEEESSCCCH
T ss_pred ECCccHHHHHHHhcHHHHHhCCcEEEeeccCccCCCCCCcEEEEEeCCHHHHHHHHHHHhccccccCCeEEEEECCCCCH
Confidence 5778889999998875 44443 9999999999999999999741 36999999999999999
Q ss_pred HHHHHHHhCCCccccccceeEEecceeeccCCceEeCCchhhhhhcCCCCC-hhhHHHHHHHHHHHHHHHHHHhCCccEE
Q 007570 61 ELVTHIKKDSTVLPRIGALREMNLEYFAVDSQGFVTDDERALEELFGDEES-SQKADACLNVMATRIATVFASLREFPLV 139 (598)
Q Consensus 61 ~~le~la~~~~~~~~i~~i~e~~~dfipld~~lfsl~~p~~~~~l~~~~~~-~~~~~~~l~~ia~~L~sl~~~lg~~P~I 139 (598)
.+++.| + +++.+.|++|.|+++||+|+|+++|||++|++|..+|.++.+ ..+....++++|++|+++|.++|.+|.|
T Consensus 117 ~lle~L-~-~~~~~~I~~v~e~~ldfiple~~lFsL~~p~~~~~l~~~~~~~~~~~~~~l~~ia~~L~sl~~tlg~~P~I 194 (592)
T 3puk_A 117 SLFNKI-K-ASCSKSIRRCKEINISFIPQESQVYTLDVPDAFYYCYSPDPSNASRKEVVMEAMAEQIVTVCATLDENPGV 194 (592)
T ss_dssp HHHHHH-H-HSCCSSEEEEEECCCCEEEEETTEEEECCTTHHHHHSCCSSSTTHHHHHHHHHHHHHHHHHHHHHTCCCEE
T ss_pred HHHHHH-H-hhHHhhcCEEEEEeeeeEeccCCEEEecCCchHHHHcCCcccccccchHHHHHHHHHHHHHHHhcCCCCeE
Confidence 999999 4 578899999999999999999999999999999999997543 2456789999999999999999999999
Q ss_pred EEccCCccchhhhhcccchhHHHHHHHHHHHHHH-hhhhcCCCCC-CCCceEEEecCCCCccchhhhhhhhhHHhhhhcc
Q 007570 140 RYRAAKSLDAMTITTFRDLVPTKLAAGVWNCLMK-YKQTIQNFPM-SETCELLILDRSVDQIAPIIHEWTYDAICHDLLN 217 (598)
Q Consensus 140 r~~~~~~~~a~~~~~~~~~v~~~la~~l~~~l~~-~~~~~~~~~~-~~~~~LiIlDR~~DliTPLlh~~TYqaLl~dl~~ 217 (598)
||+|+... -|+++|+.+++.|.+ +....+.++. .++++|||+||++|++|||+||||||||+||+||
T Consensus 195 Ry~~~~~~-----------~a~~lA~~l~~~l~~~~~~~~~~~~~~~~~~~LiIlDR~~D~vtPLlh~~TYqalv~dll~ 263 (592)
T 3puk_A 195 RYKSKPLD-----------NASKLAQLVEKKLEDYYKIDEKGLIKGKTQSQLLIIDRGFDPVSTVLHELTFQAMAYDLLP 263 (592)
T ss_dssp EECCSSSS-----------HHHHHHHHHHHHHHHSSSSCSSCSCCSCCSEEEEEEEGGGCSSTTTSCCCBHHHHHHHHSC
T ss_pred EECCCchH-----------HHHHHHHHHHHHHHHHHhccCCCcCCCCCCceEEEecCCccccccccccccHHHHHHHHhc
Confidence 99987422 256788888888877 4433333322 4589999999999999999999999999999999
Q ss_pred cCCCeEEeeccCCCCCCCcceEEecCCCChhHHHhhcCcHHHHHHHHHHHHHHHHHhhhHhhhhcCCCCCCCCCHHHHHH
Q 007570 218 LEGNKYVHEVPSKTDGPPEKKEVLLEEHDPIWVELRHAHIADASERLHEKMTGFVSKNKAAQIQNGSRDGSNLSTRDLQK 297 (598)
Q Consensus 218 I~~~~v~~~~~~~~g~~~~~k~~~l~~~D~i~~~~R~~~~~~v~~~l~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ 297 (598)
|++|.|+++. .| +++++.|+++|++|.++||+||++|+..|.+.+++|+++++. ..+..+++||++
T Consensus 264 i~~~~v~~~~---~g---~~k~~~L~~~D~~~~~~r~~~f~~v~~~l~~~~~~~~~~~~~--------~~~~~s~~dl~~ 329 (592)
T 3puk_A 264 IENDTYKYKT---DG---KEKEAVLEEDDDLWVRVRHRHIAVVLEEIPKLMKEISSTKKA--------TEGKTSLSALTQ 329 (592)
T ss_dssp CGGGEEECCS---SS---SCCEEECSTTSSSTTTTTTSBHHHHHTTSCSCSTTTTTCC---------------CCTTHHH
T ss_pred ccCCEEEecC---CC---ceeEEecCCCCHHHHHHhccCHHHHHHHHHHHHHHHHHHhhc--------ccCCCCHHHHHH
Confidence 9999999974 12 457899999999999999999999999999999999775431 224568899999
Q ss_pred HHHhchhhHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHhhhcCCCc----h----HHHHHHhhhcCCCChhhHHHH
Q 007570 298 LVQALPQYSEQIDKLSLHVEIAGKINRIIRETGLRELGQLEQDLVFGDAG----F----KDVIKFLTAKEDITRENKLRL 369 (598)
Q Consensus 298 ~v~~lp~~~~~~~~l~~H~~l~~~~~~~i~~~~l~~~~~lEq~i~~~~~~----~----~~l~~~i~~~~~~~~~dklRL 369 (598)
||++||+++++++.+++|++||++|++.+++ +|++++++||++++|.+. . +.++++|. ++.++.+|||||
T Consensus 330 ~v~~lp~~~~~~~~l~~H~~ia~~l~~~~~~-~l~~~~e~EQ~l~~g~d~~~~~~k~~~~~i~~~L~-~~~~~~~dkLRL 407 (592)
T 3puk_A 330 LMKKMPHFRKQISKQVVHLNLAEDCMNKFKL-NIEKLCKTEQDLALGTDAEGQRVKDSMLVLLPVLL-NKNHDNCDKIRA 407 (592)
T ss_dssp HHHHHHHTTTHHHHHHHHHHHHHHHHHHHHH-THHHHHHHHHHHHSSSCTTCCSCSCCHHHHTTTTT-SCSCCHHHHHHH
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHhCCCccchhhHHHHHHHHHHHh-CCCCCHHHHHHH
Confidence 9999999999999999999999999999987 899999999999998642 1 23345555 567999999999
Q ss_pred HHHHHHhcCCCCChhHHHHHHHHcCCCHHHHHHHHHHHHhcCccccCCcccCcCccchhhhhhhhhcccCCCCCCccccc
Q 007570 370 LMIVASIYPEKFEGEKGLNLMKLAKLTADDMTAVNNMRLLGGALESKKSTIGAFSLKFDIHKKKRAARKDRSGGEETWQL 449 (598)
Q Consensus 370 l~L~~l~~~~g~~~~~~~~l~q~~gl~~~~~~~l~~L~~lg~~~~~~~~~~~~~~~~f~~~k~~~~~~~~~~~~~~~y~~ 449 (598)
+|||++++ +|++++++.+|++++|++. +..+|.||+.+|+...+.. . ..++.++. .+.++.|++
T Consensus 408 ~lLy~L~~-~g~~~~~~~~Ll~~~g~~~-~~~~i~nl~~lg~~~~~~~-----~--------~~~~~rk~-~~~e~~Y~~ 471 (592)
T 3puk_A 408 VLLYIFGI-NGTTEENLDRLIHNVKIED-DSDMIRNWSHLGVPIVPPS-----Q--------QAKPLRKD-RSAEETFQL 471 (592)
T ss_dssp HHHHHHHS-CBCCHHHHHHHHHHTCCCT-TTHHHHGGGGGTCCSSSSB-----S--------SCCCCCCC-CCCCCGGGS
T ss_pred HHHHHHHc-CCCCHHHHHHHHHHcCCCh-HHHHHHHHHHhCCccccCc-----c--------ccCccccc-CCCCcceee
Confidence 99999988 6999999999999999987 8899999999998754221 0 11112222 357899999
Q ss_pred ccchhHHHHHHHHHhcCCCCCCCCCcccCCCCCCCCCCCCCcCCCCcccccccCCCCCcccCCCCCCCCCCccccccccc
Q 007570 450 SRFYPMIEELVEKLGKNELSKDDYPCMNDPSPTFHGTTPSALTNEVPAAHSMRSRRTPTWARPRSSDDGYSSDSVLKHAS 529 (598)
Q Consensus 450 s~y~P~i~~lve~~~~~~l~~~~~p~i~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~s~~~~~~ 529 (598)
|||+|++++++|++++|+|+++.|||+.+++.... .. +..+.|+|+| +.+.+..
T Consensus 472 Sr~~P~l~~ile~~~~g~L~~~~fP~~~~~~~~~~---------~~----~~~s~r~~~w-~~~~~~~------------ 525 (592)
T 3puk_A 472 SRWTPFIKDIMEDAIDNRLDSKEWPYCSRCPAVWN---------GS----GAVSARQKPR-TNYLELD------------ 525 (592)
T ss_dssp CCCCCTTHHHHHHHHTCCCCTTTSCC---------------------------------C-CCCCCCC------------
T ss_pred eccchHHHHHHHHHHhCCCCcccCCccCCCCCCcc---------CC----cccccccccc-ccCcccc------------
Confidence 99999999999999999999999999976542110 00 0113345789 5433221
Q ss_pred cccccCCCeEEEEEEcCCCHHHHHHHHHHHhhCC-CeEEEccCcccChhHHHHHHhccCCCC
Q 007570 530 SDFKKMGQRIFVFIVGGTTRSELRVCHKLTAKLN-REVVLGSSSLDDPPQFITKLKMLTAHE 590 (598)
Q Consensus 530 ~~~~~~~~~viVFviGGvTy~Ei~al~~L~~~~~-~~iiigsT~il~~~~fl~~l~~l~~~~ 590 (598)
...+++|||||+||+||+|+|++|++++..+ ++|+||||+|+||++||++|..|+++.
T Consensus 526 ---~~~~~riiVFivGGvTysE~r~~~els~~~~~~~vilG~T~i~np~~fl~~l~~l~~~~ 584 (592)
T 3puk_A 526 ---RKNGSRLIIFVIGGITYSEMRCAYEVSQAHKSCEVIIGSTHILTPRKLLDDIKMLNKSK 584 (592)
T ss_dssp ---CSCCSEEEEEEETCEEHHHHHHHHHHHHHCCSSEEEEEESSEECHHHHHHHHSSTTSCC
T ss_pred ---ccCCCeEEEEEeCCcCHHHHHHHHHHHhhcCCceEEEeeCCcCCHHHHHHHHHHhCCcc
Confidence 1357899999999999999999999999875 999999999999999999999999654
No 3
>2xhe_A UNC18; exocytosis, exocytosis complex, snare, neuro fusion, SM PROT choanoflagellates; 2.80A {Monosiga brevicollis}
Probab=100.00 E-value=1.5e-92 Score=800.91 Aligned_cols=554 Identities=22% Similarity=0.409 Sum_probs=423.9
Q ss_pred CCCCCchhhhhhhhhc------cccee-------------EEEEEeCCHHHHHHHHHhhcCCCCCcceEEEEecCCCCHH
Q 007570 1 MDETSLSPFSLCMHVC------VLLHM-------------LIYCLFCYFCSVVAFLSDMSGKSPLYKKAFVFFSSPISRE 61 (598)
Q Consensus 1 ~~~~~~~~~~~~~~~~------~~~~~-------------aIY~i~Pt~~si~~i~~d~~~~~~~Y~~~~i~Ft~~~~~~ 61 (598)
||+.+.++|++||+.+ |+.+. |||||+||.+||++|++||+...|+|+.|||||++.+|+.
T Consensus 30 lD~~~~~ils~~~~~s~L~~~gV~lv~~l~~~r~~~~~~~aIyfv~Pt~~ni~~i~~d~~~~~~~y~~~~i~F~~~~~~~ 109 (650)
T 2xhe_A 30 VDKPALRMISECARMSEILDLGVTVVEDVSKQRKVLPQFHGVYFIEPTEENLDYVIRDFADRTPTYEAAHLFFLSPVPDA 109 (650)
T ss_dssp ECHHHHHHHHTTCCHHHHHTTTEEEEEETTTCCSCBTTSEEEEEECSCHHHHHHHHHHHHSSSCSBSCEEEEESSCCCHH
T ss_pred EccccHHHHHhhcCHHHHHhCCCEEEEeccCCCCCCCCCCEEEEEcCCHHHHHHHHHHHhhcCCCcceEEEEeCCCCCHH
Confidence 5778888999888855 44333 9999999999999999999854489999999999999999
Q ss_pred HHHHHHhCCCccccccceeEEecceeeccCCceEeCCchhhhhhcCCCCChhhHHHHHHHHHHHHHHHHHHhCCccEEEE
Q 007570 62 LVTHIKKDSTVLPRIGALREMNLEYFAVDSQGFVTDDERALEELFGDEESSQKADACLNVMATRIATVFASLREFPLVRY 141 (598)
Q Consensus 62 ~le~la~~~~~~~~i~~i~e~~~dfipld~~lfsl~~p~~~~~l~~~~~~~~~~~~~l~~ia~~L~sl~~~lg~~P~Ir~ 141 (598)
++|++|+ .++.+.|++|.|+++||+|+|+++|||++|++|..+|.+.. ....++++|++|+++|.++|.+|.|||
T Consensus 110 ~le~la~-~~~~~~i~~v~e~~ldfiple~dlfsL~~~~~~~~l~~~~~----~~~~l~~ia~~L~sl~~~lg~~P~Ir~ 184 (650)
T 2xhe_A 110 LMAKLAS-AKAVKYVKTLKEINTLFIPKEHRVFTLNEPHGLVQYYGSRS----SSYNIDHLVRRLSTLCTTMNVAPIVRY 184 (650)
T ss_dssp HHHHHHH-SGGGGGEEEEEECCCCSEEEETTEEECSCTTHHHHHHSTTG----GGCCHHHHHHHHHHHHHHHTCCCEEEE
T ss_pred HHHHHHh-cchhhhcCEEEEEccceEeccCCEEEeCCchHHHHhcCCcc----chHHHHHHHHHHHHHHHHcCCCCEEEe
Confidence 9999997 45789999999999999999999999999999999996321 256799999999999999999999999
Q ss_pred ccCCccchhhhhcccchhHHHHHHHHHHHHHHhhhhcCCC---CCCCCceEEEecCCCCccchhhhhhhhhHHhhhhccc
Q 007570 142 RAAKSLDAMTITTFRDLVPTKLAAGVWNCLMKYKQTIQNF---PMSETCELLILDRSVDQIAPIIHEWTYDAICHDLLNL 218 (598)
Q Consensus 142 ~~~~~~~a~~~~~~~~~v~~~la~~l~~~l~~~~~~~~~~---~~~~~~~LiIlDR~~DliTPLlh~~TYqaLl~dl~~I 218 (598)
+|+.+ ..|+++|+.++..|.. ..+...+ +..++++|||+||++|++|||+||||||||+||+|||
T Consensus 185 ~~~~~-----------~~a~~la~~l~~~l~~-~~~~~~~~~~~~~~~~~LiIlDR~~D~vTPLlhq~TYqaLi~dll~I 252 (650)
T 2xhe_A 185 SSTST-----------PGTERMAMQLQKEIDM-SVSQGLINAREGKLKSQFLILDRAVDLKSPLVHELTYQAAAYDLLNI 252 (650)
T ss_dssp CTTCC-----------HHHHHHHHHHHHHHHH-HHTTTSCCCCCCSSCCEEEEECGGGCSSTTTSCCCBHHHHHHHHSCC
T ss_pred cCCCc-----------hHHHHHHHHHHHHHHh-hccCCcccCCCCCCCCEEEEEcCCcchhhhccccchHHHHHHHHhcC
Confidence 98741 2467788888777765 2222221 2345889999999999999999999999999999999
Q ss_pred CCCeEEeeccCCCCCCCcceEEecCCCChhHHHhhcCcHHHHHHHHHHHHHHHHHhhhHhhhhc-CCCCCCCCCHHHHHH
Q 007570 219 EGNKYVHEVPSKTDGPPEKKEVLLEEHDPIWVELRHAHIADASERLHEKMTGFVSKNKAAQIQN-GSRDGSNLSTRDLQK 297 (598)
Q Consensus 219 ~~~~v~~~~~~~~g~~~~~k~~~l~~~D~i~~~~R~~~~~~v~~~l~~~~~~~~~~~~~~~i~~-~~~~~~~~~~~~~~~ 297 (598)
++|.|+++.+.. ++..+++++.|+++|+||.++||+||++|+..|.+++++|+++++. .++ ....++..+++||++
T Consensus 253 ~~n~v~~~~~~~-~~~~~~k~~~L~~~D~~~~~~r~~~f~~v~~~l~~~~~~~~~~~~~--~~~~~~~~~~~~s~~~lk~ 329 (650)
T 2xhe_A 253 ENDIYSYSTVDA-GGREQQRQVVLGEDDDIWLQMRHLHISEVFRKVKSSFDEFCVSARR--LQGLRDSQQGEGGAGALKQ 329 (650)
T ss_dssp BTTEEEEEECCS-SCCSEEEEEECCTTCTTHHHHTTSBHHHHHHHHHHHHHHHHHHHHH--TTTCCCCCCSTTTHHHHHH
T ss_pred cCCEEEEEecCC-CCCccceEEeCCCCCHHHHHHhccCHHHHHHHHHHHHHHHHHHhhh--hccccccccccccHHHHHH
Confidence 999999986432 2345578899999999999999999999999999999999987653 221 001124668999999
Q ss_pred HHHhchhhHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHhhhcCCCc--------hHHHHHHhhhcCCCChhhHHHH
Q 007570 298 LVQALPQYSEQIDKLSLHVEIAGKINRIIRETGLRELGQLEQDLVFGDAG--------FKDVIKFLTAKEDITRENKLRL 369 (598)
Q Consensus 298 ~v~~lp~~~~~~~~l~~H~~l~~~~~~~i~~~~l~~~~~lEq~i~~~~~~--------~~~l~~~i~~~~~~~~~dklRL 369 (598)
||++||+++++++++++|++||++|++.+++ +|++++++||+|++|.+. .+.+.++|. +...+..|||||
T Consensus 330 ~V~~LP~~~~~~~~l~~H~~ia~~l~~~i~~-~l~~~~~~EQ~l~~g~d~~g~~~~~~~~~i~~ll~-~~~~~~~dkLRL 407 (650)
T 2xhe_A 330 MLKDLPQHREQMQKYSLHLDMSNAINMAFSS-TIDSCTKAEQNIVTEEEQDGNKVRDFIGEVASVVV-DRRVSTEDKLRC 407 (650)
T ss_dssp HHHHCGGGHHHHHHHHHHHHHHHHHHHHSCH-HHHHHHHHHHHHHHSBCSSCCBCCCHHHHHHHHHH-CTTSCHHHHHHH
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhcCCcccccchhHHHHHHHHHHh-CCCCCHHHHHHH
Confidence 9999999999999999999999999999999 999999999999988642 245667776 468899999999
Q ss_pred HHHHHHhcCCCCChhHHHHHHHHcCCCHHHHHHHHHHHHhcCccccCCcccCcCccchhhhhhhhhcccCCCCCCccccc
Q 007570 370 LMIVASIYPEKFEGEKGLNLMKLAKLTADDMTAVNNMRLLGGALESKKSTIGAFSLKFDIHKKKRAARKDRSGGEETWQL 449 (598)
Q Consensus 370 l~L~~l~~~~g~~~~~~~~l~q~~gl~~~~~~~l~~L~~lg~~~~~~~~~~~~~~~~f~~~k~~~~~~~~~~~~~~~y~~ 449 (598)
+|||++++ +|+++++++++++.||++.+++.+|.||+++|+...+.......| ...+++ ...+|++
T Consensus 408 l~Ly~l~~-~g~~~~~l~~ll~~~G~~~~~~~~i~nL~~lgl~~~~~~~~~~~~----------~~~rk~---~~~~yv~ 473 (650)
T 2xhe_A 408 LMLCVLAK-NGTSSHELNNLLDNANIATPSRSAIYNLEMLGATVVADRRGRKPK----------TMKRIE---RDMPYVL 473 (650)
T ss_dssp HHHHHHHH-TCBCHHHHHHHHHHTTCCGGGGHHHHGGGGGTCCCBGGGCCCCCC----------CCCCCC---CCCCSTT
T ss_pred HHHHHHHh-CCCCHHHHHHHHHHcCCCHHHHHHHHHHHHhCCcccccccccccc----------cccccc---cCCccee
Confidence 99999999 589999999999999999999999999999999865321000011 111111 2238999
Q ss_pred ccchhHHHHHHHHHhcCCCCCCCCCcccCCCCCCCCCCCCCcCCCCcccccccCCCCCcccCCCCCCCC----CCccccc
Q 007570 450 SRFYPMIEELVEKLGKNELSKDDYPCMNDPSPTFHGTTPSALTNEVPAAHSMRSRRTPTWARPRSSDDG----YSSDSVL 525 (598)
Q Consensus 450 s~y~P~i~~lve~~~~~~l~~~~~p~i~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~----~~~~s~~ 525 (598)
|||+|++++|||++++++++++.||++.++.....+.+...+....++..+.++.+.|+|++...+... ..+++..
T Consensus 474 s~y~Pl~~rlve~l~~~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~w~~~~~~~~~~~~~~~~~~~~ 553 (650)
T 2xhe_A 474 SRWTPIVKDLMEYIATGQLDLESYPAVRDGPSVVQPKRASKSVEEDDDGPATSARKRGNWAKNKGNNRSLPSTPSGVAVS 553 (650)
T ss_dssp CCCCCHHHHHHHHHTTTCSCTTTSCBSSCGGGSCCCC-------------------------------------------
T ss_pred ccchHHHHHHHHHHhcCCCCcccCceeCCCCccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 999999999999999999999999999764322111100000000000011123345789875532211 0001111
Q ss_pred cccc-cccccCCCeEEEEEEcCCCHHHHHHHHHHHhhCCCeEEEccCcccChhHHHHHHhccCCCC
Q 007570 526 KHAS-SDFKKMGQRIFVFIVGGTTRSELRVCHKLTAKLNREVVLGSSSLDDPPQFITKLKMLTAHE 590 (598)
Q Consensus 526 ~~~~-~~~~~~~~~viVFviGGvTy~Ei~al~~L~~~~~~~iiigsT~il~~~~fl~~l~~l~~~~ 590 (598)
+... .+....++++||||||||||+|+|+||+|+++.|++|+||||+|+||++||++|..|++++
T Consensus 554 g~~~~~~~~~~~~~viVF~iGGvTysEi~al~~ls~~~~~~viigsT~Iln~~~fl~~l~~l~~~~ 619 (650)
T 2xhe_A 554 GNGAAGAAESAKPKLFVFINGTVSYNEIRCAYEVSQSSGYEVYIGAHNIATPAEFVELVSLLDKAD 619 (650)
T ss_dssp --------CCCSCEEEEEEEEEECHHHHHHHHHHHTTSSSEEEEEEEEECCHHHHHHHHHTTTC--
T ss_pred cccccccccCCCCEEEEEEECCCCHHHHHHHHHHHhcCCCEEEEeeCCcCCHHHHHHHHHHcCCCc
Confidence 1100 0011356889999999999999999999999999999999999999999999999999765
No 4
>1epu_A S-SEC1; parallel beta-sheets, LEFT-hand turn connection, helical BUN endocytosis-exocytosis complex; 2.40A {Loligo pealei} SCOP: e.25.1.1 PDB: 1fvf_A 1fvh_A
Probab=100.00 E-value=2e-92 Score=794.09 Aligned_cols=528 Identities=27% Similarity=0.459 Sum_probs=419.6
Q ss_pred CCCCCchhhhhhhhhc------cccee-------------EEEEEeCCHHHHHHHHHhhcCC-CCCcceEEEEecCCCCH
Q 007570 1 MDETSLSPFSLCMHVC------VLLHM-------------LIYCLFCYFCSVVAFLSDMSGK-SPLYKKAFVFFSSPISR 60 (598)
Q Consensus 1 ~~~~~~~~~~~~~~~~------~~~~~-------------aIY~i~Pt~~si~~i~~d~~~~-~~~Y~~~~i~Ft~~~~~ 60 (598)
||+.+.++|++||+.+ |+.+. |||||+||.+||++|++|++.+ .|+|+.|||+|++.+|+
T Consensus 30 lD~~~~~ils~~~~~s~L~~~gV~lv~~l~~~r~~~~~~~aIy~v~Pt~~ni~~i~~d~~~~~~~~y~~~~i~F~~~~~~ 109 (591)
T 1epu_A 30 VDQLSMRMVSACCKMHEIMSEGITLVEDINRRREPLPLLEAVYLITPTEESVKCLMADFQNPDNPQYRGAHIFFTEACPE 109 (591)
T ss_dssp ECHHHHHHHHHHCCHHHHHTTTEEEEEESSSCCCCEEEEEEEEEECCCHHHHHHHHHHTSSTTSCSEEEEEEEESSCCCH
T ss_pred EccccHHHHHHhcCHHHHHHCCCEEEeecccCCCCCCCCCeEEEecCCHHHHHHHHHHHhhcccccCCeEEEEECCCCCH
Confidence 5788889999988855 44332 9999999999999999999752 48999999999999999
Q ss_pred HHHHHHHhCCCccccccceeEEecceeeccCCceEeCCchhhhhhcCCCCChhhHHHHHHHHHHHHHHHHHHhCCccEEE
Q 007570 61 ELVTHIKKDSTVLPRIGALREMNLEYFAVDSQGFVTDDERALEELFGDEESSQKADACLNVMATRIATVFASLREFPLVR 140 (598)
Q Consensus 61 ~~le~la~~~~~~~~i~~i~e~~~dfipld~~lfsl~~p~~~~~l~~~~~~~~~~~~~l~~ia~~L~sl~~~lg~~P~Ir 140 (598)
.+++.||+. ++.+.|++|.|+++||+|+|+++|||++|++|..+|.+.+ ..+....++++|++|+++|.++|.+|.||
T Consensus 110 ~~le~la~~-~~~~~i~~v~e~~ldf~ple~dlfsl~~~~~~~~~~~~~~-~~~~~~~l~~ia~~L~sl~~~lg~~P~Ir 187 (591)
T 1epu_A 110 ELFKELCKS-TTARFIKTLKEINIAFLPYESQIFSLDSPDTFQVYYNPSR-AQGGIPNKERCAEQIATLCATLGEYPSVR 187 (591)
T ss_dssp HHHHHHHHS-TTGGGEEEEEECCCCSEEEETTEEECCCTHHHHHHHCGGG-STTCHHHHHHHHHHHHHHHHHHTCCCEEE
T ss_pred HHHHHHHhC-chHhhhceeeEeccceEecCCCEEEeCCccHHHHhcCCcc-hhhhhHHHHHHHHHHHHHHHHcCCCCeEE
Confidence 999999974 5788999999999999999999999999999999998632 12336789999999999999999999999
Q ss_pred EccCCccchhhhhcccchhHHHHHHHHHHHHHHhhhhcCCCCC---CCCceEEEecCCCCccchhhhhhhhhHHhhhhcc
Q 007570 141 YRAAKSLDAMTITTFRDLVPTKLAAGVWNCLMKYKQTIQNFPM---SETCELLILDRSVDQIAPIIHEWTYDAICHDLLN 217 (598)
Q Consensus 141 ~~~~~~~~a~~~~~~~~~v~~~la~~l~~~l~~~~~~~~~~~~---~~~~~LiIlDR~~DliTPLlh~~TYqaLl~dl~~ 217 (598)
|+|+.. .|+++|+.++++|..+..+.+.|+. .++++|||+||++|++|||+||||||||+||+||
T Consensus 188 ~~~~~~------------~a~~lA~~l~~~l~~~~~~~~~~~~~~~~~~~~LiIlDR~~D~vTPLlhq~TYqali~dll~ 255 (591)
T 1epu_A 188 YRSDFD------------ENASFAQLVQQKLDAYRADDPTMGEGPQKDRSQLLILDRGFDPISPLLHELTFQAMAYDLLP 255 (591)
T ss_dssp ECTTST------------HHHHHHHHHHHHHHHHHHTCTTTTCHHHHTSCEEEEEEGGGCSSGGGSCCCBHHHHHHHHSC
T ss_pred ecCCCc------------HHHHHHHHHHHHHHHHHhcCCCCCCCCCCCCceEEEECCCccchhhhhhhhhHHHHHHHHhC
Confidence 988742 4778899998888887665555533 3478999999999999999999999999999999
Q ss_pred cCCCeEEeeccCCCCCCCcceEEecCCCChhHHHhhcCcHHHHHHHHHHHHHHHHHhhhHhhhhcCCCCCCCCCHHHHHH
Q 007570 218 LEGNKYVHEVPSKTDGPPEKKEVLLEEHDPIWVELRHAHIADASERLHEKMTGFVSKNKAAQIQNGSRDGSNLSTRDLQK 297 (598)
Q Consensus 218 I~~~~v~~~~~~~~g~~~~~k~~~l~~~D~i~~~~R~~~~~~v~~~l~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ 297 (598)
|++|.|+++.+ .++..+++++.|+++|+||.++||+||++|+..|.+++++|+++++..+ .++..+++||++
T Consensus 256 I~~n~v~~~~~--~~~~~~~k~~~L~~~D~~~~~~r~~~f~~v~~~l~~~~~~~~~~~~~~~------~~~~~s~~~lk~ 327 (591)
T 1epu_A 256 IENDVYKYVNT--GGNEVPEKEVLLDEKDDLWVEMRHQHIAVVSQNVTKKLKQFADEKRMGT------AADKAGIKDLSQ 327 (591)
T ss_dssp CBTTEECC-------------CEECCGGGSSHHHHTTSBHHHHHHHHHHHHHHHHHHTC--------------CCCCCHH
T ss_pred cCCCEEEEEec--CCCCccceEEeCCCCChHHHHHhccCHHHHHHHHHHHHHHHHHhccccc------cccccCHHHHHH
Confidence 99999999753 1223456889999999999999999999999999999999988654211 023467889999
Q ss_pred HHHhchhhHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHhhhcCCCc--------hHHHHHHhhhcCCCChhhHHHH
Q 007570 298 LVQALPQYSEQIDKLSLHVEIAGKINRIIRETGLRELGQLEQDLVFGDAG--------FKDVIKFLTAKEDITRENKLRL 369 (598)
Q Consensus 298 ~v~~lp~~~~~~~~l~~H~~l~~~~~~~i~~~~l~~~~~lEq~i~~~~~~--------~~~l~~~i~~~~~~~~~dklRL 369 (598)
||++||+++++++.+++|++||++|++.+++ +|++++++||++++|.+. .+.++++|. +...+..|||||
T Consensus 328 ~v~~lP~~~~~~~~l~~H~~ia~~l~~~i~~-~l~~~~~~EQ~l~~g~d~~g~~~k~~~~~i~~~l~-~~~~~~~dkLRL 405 (591)
T 1epu_A 328 MLKKMPQYQKELSKYSTHLHLAEDCMKQYQQ-HVDKLCKVEQDLAMGTDADGEKIRDHMRNIVPILL-DQKISAYDKIRI 405 (591)
T ss_dssp HHHTHHHHHHHHTTSHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHSBCTTSCBCCCCHHHHHHHHT-CTTSCHHHHHHH
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhcCCCccccccchHHHHHHHHHh-CCCCCHHHHHHH
Confidence 9999999999999999999999999999999 999999999999998642 125777776 467899999999
Q ss_pred HHHHHHhcCCCCChhHHHHHHHHcCCCHHHHHHHHHHHHhcCccccCCcccCcCccchhhhhhhhhcccCCCCCCccccc
Q 007570 370 LMIVASIYPEKFEGEKGLNLMKLAKLTADDMTAVNNMRLLGGALESKKSTIGAFSLKFDIHKKKRAARKDRSGGEETWQL 449 (598)
Q Consensus 370 l~L~~l~~~~g~~~~~~~~l~q~~gl~~~~~~~l~~L~~lg~~~~~~~~~~~~~~~~f~~~k~~~~~~~~~~~~~~~y~~ 449 (598)
+|||++++ +|+++++++++++.+|++.+++.++.||+++|+...+...+...+...+ .+. ++. .+.+.+|++
T Consensus 406 l~Ly~l~~-~g~~~~~l~~ll~~~g~~~~~~~~i~~l~~~g~~~~~~~~~~~~~~~~~--~~~----~~~-~~~~~~y~~ 477 (591)
T 1epu_A 406 ILLYIIHK-GGISEENLAKLVQHAHIPAEEKWIINDMQNLGVPIIQDGGRRKIPQPYH--THN----RKE-RQADHTYQM 477 (591)
T ss_dssp HHHHHHHH-TCBCHHHHHHHHHHTTCCHHHHHHHHHGGGGTCCCBSCTTSCCCCCTTS--GGG----SCC-CCSCCSCGG
T ss_pred HHHHHHHc-CCCCHHHHHHHHHhcCCCHHHHHHHHHHHHcCCccccCCcccccccccc--ccc----ccc-CCCCccccc
Confidence 99999999 5899999999999999998999999999999987653211111121100 000 111 356778999
Q ss_pred ccchhHHHHHHHHHhcCCCCCCCCCcccCCCCCCCCCCCCCcCCCCcccccccCCCCCcccCCCCCCCCCCccccccccc
Q 007570 450 SRFYPMIEELVEKLGKNELSKDDYPCMNDPSPTFHGTTPSALTNEVPAAHSMRSRRTPTWARPRSSDDGYSSDSVLKHAS 529 (598)
Q Consensus 450 s~y~P~i~~lve~~~~~~l~~~~~p~i~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~s~~~~~~ 529 (598)
|||+|++++|||++++++++++.||++.++..... .+ ..++.++++|++.+++..
T Consensus 478 s~~~Pl~~~ive~l~~~~l~~~~~~~~~~~~~~~~----------~~---~~~s~~~~~~~~~~~~~~------------ 532 (591)
T 1epu_A 478 SRWTPYMKDIMEAAVEDKLDTRHYPFLNGGGPRPS----------CQ---QPVSVRYGHWHKDKGQAS------------ 532 (591)
T ss_dssp GCCCCHHHHHHHHHHTTCSCTTTSCBTTSCC-------------------------------------------------
T ss_pred cccchhHHHHHHHHhcCCCCcccCcccCCCCCccc----------cC---CccccccCcccCCCCccc------------
Confidence 99999999999999999999999999975432100 00 112234467876443211
Q ss_pred cccccCCCeEEEEEEcCCCHHHHHHHHHHHh--hCCCeEEEccCcccChhHHHHHHhccCC
Q 007570 530 SDFKKMGQRIFVFIVGGTTRSELRVCHKLTA--KLNREVVLGSSSLDDPPQFITKLKMLTA 588 (598)
Q Consensus 530 ~~~~~~~~~viVFviGGvTy~Ei~al~~L~~--~~~~~iiigsT~il~~~~fl~~l~~l~~ 588 (598)
...++++|||||||+||+|+++||+|++ +.|++|+||||+|+||++||++|..|++
T Consensus 533 ---~~~~~~viVF~vGG~Ty~E~~~l~~l~~~~~~~~~viigsT~i~n~~~fl~~l~~l~~ 590 (591)
T 1epu_A 533 ---YKSGPRLIIFVVGGISYSEMRSAYEVTQTAKNNWEVILGSTHILTPEGLLRDLRKISN 590 (591)
T ss_dssp ----CCCCEEEEEEETCBCHHHHHHHHHHHTSSCSSCEEEEEESSBCCHHHHHHHHHTTSC
T ss_pred ---cCCCCeEEEEEECCCCHHHHHHHHHHHhhccCCCeEEEecCCcCCHHHHHHHHHHhcC
Confidence 1235679999999999999999999998 5689999999999999999999999986
No 5
>3c98_A Syntaxin-binding protein 1; protein complex, alternative splicing, cytoplasm, membrane, phosphoprotein, protein transport, transport, coiled coil; 2.60A {Rattus norvegicus} PDB: 3puj_A
Probab=100.00 E-value=7.4e-92 Score=791.33 Aligned_cols=525 Identities=27% Similarity=0.500 Sum_probs=423.0
Q ss_pred CCCCCchhhhhhhhhc------cccee-------------EEEEEeCCHHHHHHHHHhhcCC-CCCcceEEEEecCCCCH
Q 007570 1 MDETSLSPFSLCMHVC------VLLHM-------------LIYCLFCYFCSVVAFLSDMSGK-SPLYKKAFVFFSSPISR 60 (598)
Q Consensus 1 ~~~~~~~~~~~~~~~~------~~~~~-------------aIY~i~Pt~~si~~i~~d~~~~-~~~Y~~~~i~Ft~~~~~ 60 (598)
||+...++|++||+.+ |+.|. |||||+||.+||++|++||++. .++|++|||||++.+|+
T Consensus 45 ~D~~t~~iis~~~~~~~L~~~gVtl~~~i~~~R~~~~~~~aIyfv~Pt~eni~~i~~dl~~~~~~~Y~~~~i~F~~~~~~ 124 (606)
T 3c98_A 45 VDQLSMRMLSSCCKMTDIMTEGITIVEDINKRREPLPSLEAVYLITPSEKSVHSLISDFKDPPTAKYRAAHVFFTDSCPD 124 (606)
T ss_dssp ECHHHHHHHHTTCCHHHHTTTTEEEEEETTSCCCCBTTSCEEEEECCCHHHHHHHHHTTTSGGGCCBSCEEEEESSCCCH
T ss_pred EcCCChHHHHhhCCHHHHHHCCCeEEEeccCCCCCCCCCCEEEEEcCCHHHHHHHHHHhcchhhcccCeEEEEECCCCCH
Confidence 5777888999998855 55554 9999999999999999999741 36899999999999999
Q ss_pred HHHHHHHhCCCccccccceeEEecceeeccCCceEeCCchhhhhhcCCCCChhhHHHHHHHHHHHHHHHHHHhCCccEEE
Q 007570 61 ELVTHIKKDSTVLPRIGALREMNLEYFAVDSQGFVTDDERALEELFGDEESSQKADACLNVMATRIATVFASLREFPLVR 140 (598)
Q Consensus 61 ~~le~la~~~~~~~~i~~i~e~~~dfipld~~lfsl~~p~~~~~l~~~~~~~~~~~~~l~~ia~~L~sl~~~lg~~P~Ir 140 (598)
.+++.||+ .+..+.|++|.|+++||+|+|+++|||++|++|..+|.+.+ ..+....++++|++|+++|.++|.+|.||
T Consensus 125 ~~le~la~-~~~~~~i~~v~e~~ldf~~le~~lfsL~~~~~~~~l~~~~~-~~~~~~~l~~ia~~L~sv~~~lg~~P~Ir 202 (606)
T 3c98_A 125 ALFNELVK-SRAAKVIKTLTEINIAFLPYESQVYSLDSADSFQSFYSPHK-AQMKNPILERLAEQIATLCATLKEYPAVR 202 (606)
T ss_dssp HHHHHHHT-SGGGGTEEEEEECCCCSEECSSSEEECCCTTHHHHHHCGGG-TTSCHHHHHHHHHHHHHHHHHHTCCCEEE
T ss_pred HHHHHHHh-cCcccccCeEEEEecchhhcCCcEEEecCCchHHHhcCCcc-cccchHHHHHHHHHHHHHHHHcCCCCeEE
Confidence 99999996 56789999999999999999999999999999999998543 22336789999999999999999999999
Q ss_pred EccCCccchhhhhcccchhHHHHHHHHHHHHHHhhhhcCCC---CCCCCceEEEecCCCCccchhhhhhhhhHHhhhhcc
Q 007570 141 YRAAKSLDAMTITTFRDLVPTKLAAGVWNCLMKYKQTIQNF---PMSETCELLILDRSVDQIAPIIHEWTYDAICHDLLN 217 (598)
Q Consensus 141 ~~~~~~~~a~~~~~~~~~v~~~la~~l~~~l~~~~~~~~~~---~~~~~~~LiIlDR~~DliTPLlh~~TYqaLl~dl~~ 217 (598)
|+|+.. .|+.+|+.+++.++.+.++++.+ +..++++|||+||++|++|||+||||||||+||+||
T Consensus 203 ~~~~~~------------~~~~la~~~~~~l~~~~~~~~~~~~~~~~~~~~LlIlDR~~D~vTPLlhq~TYqalv~dll~ 270 (606)
T 3c98_A 203 YRGEYK------------DNALLAQLIQDKLDAYKADDPTMGEGPDKARSQLLILDRGFDPSSPVLHELTFQAMSYDLLP 270 (606)
T ss_dssp ECTTSH------------HHHHHHHHHHHHHHHHHHHCTTTTCSTTTTSCEEEEEEGGGCSSTTTSCCCBHHHHHHHHSC
T ss_pred EecCch------------HHHHHHHHHHHHHHHHHhcCCcccCCCCCCCceEEEeeccccccchhcccccHHHHHHHHhC
Confidence 988742 46678888888888887665444 234588999999999999999999999999999999
Q ss_pred cCCCeEEeeccCCCCCCCcceEEecCCCChhHHHhhcCcHHHHHHHHHHHHHHHHHhhhHhhhhcCCCCCCCCCHHHHHH
Q 007570 218 LEGNKYVHEVPSKTDGPPEKKEVLLEEHDPIWVELRHAHIADASERLHEKMTGFVSKNKAAQIQNGSRDGSNLSTRDLQK 297 (598)
Q Consensus 218 I~~~~v~~~~~~~~g~~~~~k~~~l~~~D~i~~~~R~~~~~~v~~~l~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ 297 (598)
|++|.|+++.+.. +..+.+++.|+++|+||.++||+||++|+..|.+.+++|+++++. ..++..+++||++
T Consensus 271 I~~n~v~~~~~~~--~~~~~k~~~l~~~D~~~~~~r~~~f~~v~~~l~~~~~~~~~~~~~-------~~~~~~s~~dlk~ 341 (606)
T 3c98_A 271 IENDVYKYETSGI--GEARVKEVLLDEDDDLWIALRHKHIAEVSQEVTRSLKDFSSSKRM-------NTGEKTTMRDLSQ 341 (606)
T ss_dssp CBTTEEEEEEESS--SSEEEEEEECSTTCHHHHHHTTSBHHHHHHHHHHHHHHHHHHTTC--------------CCSCCC
T ss_pred ccCCeEEEecCCC--CCccceEeecCCCchhHHHHhccCHHHHHHHHHHHHHHHHHHHhh-------hcccccCHHHHHH
Confidence 9999999986322 234467889999999999999999999999999999999876531 1223557889999
Q ss_pred HHHhchhhHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHhhhcCCCc--------hHHHHHHhhhcCCCChhhHHHH
Q 007570 298 LVQALPQYSEQIDKLSLHVEIAGKINRIIRETGLRELGQLEQDLVFGDAG--------FKDVIKFLTAKEDITRENKLRL 369 (598)
Q Consensus 298 ~v~~lp~~~~~~~~l~~H~~l~~~~~~~i~~~~l~~~~~lEq~i~~~~~~--------~~~l~~~i~~~~~~~~~dklRL 369 (598)
||++||+++++++.+++|++|+++|++.++ ++|++++++||+|++|.+. .+.++++|. +..++..|||||
T Consensus 342 ~v~~lP~~~~~~~~l~~H~~ia~~l~~~~~-~~l~~~~e~EQ~l~~~~d~~~~~~~~~~~~i~~ll~-~~~~~~~dkLRL 419 (606)
T 3c98_A 342 MLKKMPQYQKELSKYSTHLHLAEDCMKHYQ-GTVDKLCRVEQDLAMGTDAEGEKIKDPMRAIVPILL-DANVSTYDKIRI 419 (606)
T ss_dssp TTTTCGGGHHHHHHHHHHHHHHHHHHHHHT-THHHHHHHHHHHHHHSBCTTSCBCSCTHHHHHHHHT-CTTSCHHHHHHH
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhCCCcchhhHHHHHHHHHHHHh-CCCCCHHHHHHH
Confidence 999999999999999999999999999995 5899999999999988542 246777776 578999999999
Q ss_pred HHHHHHhcCCCCChhHHHHHHHHcCCCHHHHHHHHHHHHhcCccccCCcccCcCccchhhhhhhhhcccCCCCCCccccc
Q 007570 370 LMIVASIYPEKFEGEKGLNLMKLAKLTADDMTAVNNMRLLGGALESKKSTIGAFSLKFDIHKKKRAARKDRSGGEETWQL 449 (598)
Q Consensus 370 l~L~~l~~~~g~~~~~~~~l~q~~gl~~~~~~~l~~L~~lg~~~~~~~~~~~~~~~~f~~~k~~~~~~~~~~~~~~~y~~ 449 (598)
+|||++++ +|++++++.++++..|++.++..++.||+++|+...+... ... ......+ ..+.+.+|++
T Consensus 420 ~lLy~l~~-~g~~~~~l~~~~~~~~~~~~~~~~i~~l~~lg~~~~~~~~----~~~------~~~~~~~-~~~~~~~~~~ 487 (606)
T 3c98_A 420 ILLYIFLK-NGITEENLNKLIQHAQIPPEDSEIITNMAHLGVPIVTDST----LRR------RSKPERK-ERISEQTYQL 487 (606)
T ss_dssp HHHHHHHT-TSBCHHHHHHHHHHHTCCHHHHHHHHHGGGGTCCCBCCCT----TTC------CCCCCCC-CCCCCCCCTT
T ss_pred HHHHHHHh-cCCCHHHHHHHHHHcCCCHHHHHHHHHHHHhCCccccccc----ccc------ccchhhc-cCCcccccce
Confidence 99999998 6999999999999999999999999999999987653211 100 0011111 1356788999
Q ss_pred ccchhHHHHHHHHHhcCCCCCCCCCcccCCCCCCCCCCCCCcCCCCcccccccCCCCCcccCCCCCCCCCCccccccccc
Q 007570 450 SRFYPMIEELVEKLGKNELSKDDYPCMNDPSPTFHGTTPSALTNEVPAAHSMRSRRTPTWARPRSSDDGYSSDSVLKHAS 529 (598)
Q Consensus 450 s~y~P~i~~lve~~~~~~l~~~~~p~i~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~s~~~~~~ 529 (598)
|||+|++++++|+++++++++..||++.++.....+ .+..+.+.+.|++...++.
T Consensus 488 s~~~Pll~~lle~l~k~~L~~~~~p~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~------------ 542 (606)
T 3c98_A 488 SRWTPIIKDIMEDTIEDKLDTKHYPYISTRSSASFS-------------TTAVSARYGHWHKNKAPGE------------ 542 (606)
T ss_dssp CCCCCHHHHHHHHHHTTCSCTTTSCCSSCC--------------------------------------------------
T ss_pred ecchHHHHHHHHHHHhCCCCcccCcccCCCCccccc-------------ccccccccCCccccCCCCC------------
Confidence 999999999999999999999999998654422110 1112233457776554321
Q ss_pred cccccCCCeEEEEEEcCCCHHHHHHHHHHHhhC-CCeEEEccCcccChhHHHHHHhccCCCC
Q 007570 530 SDFKKMGQRIFVFIVGGTTRSELRVCHKLTAKL-NREVVLGSSSLDDPPQFITKLKMLTAHE 590 (598)
Q Consensus 530 ~~~~~~~~~viVFviGGvTy~Ei~al~~L~~~~-~~~iiigsT~il~~~~fl~~l~~l~~~~ 590 (598)
...++++|||||||+||+|+|++|+|+++. +++|+||||+|+||++||++|+.|++.+
T Consensus 543 ---~~~~~~iIVFvvGGvTy~E~~~l~~ls~~~~~~~viiGsT~Iln~~~fl~~L~~L~k~~ 601 (606)
T 3c98_A 543 ---YRSGPRLIIFILGGVSLNEMRCAYEVTQANGKWEVLIGSTHILTPQKLLDTLKKLNKTD 601 (606)
T ss_dssp ----CCCSEEEEEEETCEEHHHHHHHHHHHHHHSSCEEEEEESSEECHHHHHHHHTTTTSCC
T ss_pred ---CCCCCEEEEEEECCcCHHHHHHHHHHHHHcCCcEEEEEeCCeeCHHHHHHHHHHhCCCc
Confidence 135688999999999999999999999866 5799999999999999999999999765
No 6
>1mqs_A SLY1 protein, SLY1P; SM-protein, snare, syntaxin, endocytosis/exocytosis complex; 3.00A {Saccharomyces cerevisiae} SCOP: e.25.1.1
Probab=100.00 E-value=2e-82 Score=719.82 Aligned_cols=528 Identities=18% Similarity=0.282 Sum_probs=387.9
Q ss_pred CCCCCchhhhhhhhhc------cccee-------------EEEEEeCCHHHHHHHHHhhcCCCCCcceEEEEecCCCCHH
Q 007570 1 MDETSLSPFSLCMHVC------VLLHM-------------LIYCLFCYFCSVVAFLSDMSGKSPLYKKAFVFFSSPISRE 61 (598)
Q Consensus 1 ~~~~~~~~~~~~~~~~------~~~~~-------------aIY~i~Pt~~si~~i~~d~~~~~~~Y~~~~i~Ft~~~~~~ 61 (598)
||+.+.++|++||+.+ |+.+. |||||+||.+||++|++||+. |+|+.|||||++.+|+.
T Consensus 63 lD~~~~~ils~~~~~s~L~~~gVtlv~~l~~~r~~~~~~~aIYfv~Pt~~ni~~i~~d~~~--~~Y~~~~i~F~~~~~~~ 140 (671)
T 1mqs_A 63 LDIKSTATISSVLRVNDLLKAGITVHSLIKQDRSPLPDVPAIYFVSPTKENIDIIVNDLKS--DKYSEFYINFTSSLPRN 140 (671)
T ss_dssp ECHHHHHHHTTTCCHHHHHHTTEEEEEETTSCCCCEEEEEEEEEECSCHHHHHHHHHHHHH--TCEEEEEEEESSCCCHH
T ss_pred EccccHHHHHHhcCHHHHHhCCCeEEeeccCCCCCCCCceEEEEeCCCHHHHHHHHHHhhh--cccceEEEEecCCCCHH
Confidence 4777888898888755 54443 999999999999999999974 89999999999999999
Q ss_pred HHHHHHhC---CCccccccceeEEecceeeccCCceEeCCchhhhhhcCCCCChhhHHHHHHHHHHHHHHHHHHhCCccE
Q 007570 62 LVTHIKKD---STVLPRIGALREMNLEYFAVDSQGFVTDDERALEELFGDEESSQKADACLNVMATRIATVFASLREFPL 138 (598)
Q Consensus 62 ~le~la~~---~~~~~~i~~i~e~~~dfipld~~lfsl~~p~~~~~l~~~~~~~~~~~~~l~~ia~~L~sl~~~lg~~P~ 138 (598)
++|+||+. .++.+.|++|.|+++||+|+|+++|||++|++|..+|.+.+|+......++++|++|+++|.++|.+|.
T Consensus 141 lle~la~~~~~~~~~~~i~~v~e~~ldfiple~dlfsL~~p~s~~~l~~~~~~d~~~~~~l~~ia~~L~sl~~~lg~~P~ 220 (671)
T 1mqs_A 141 LLEDLAQQVSITGKSDKIKQVYDQYLDFIVTEPELFSLEISNAYLTLNDPKTTEEEITGLCANIADGLFNTVLTINSIPI 220 (671)
T ss_dssp HHHHHHHHHHTSTTGGGEEEEEECCCCSEECSTTEEECCCCSHHHHHHCSSSCTTHHHHHHHHHHHHHHHHHHHHTCCCE
T ss_pred HHHHHHhhhhhcchhhhcCEEEEEccceeeccCCEEEecCchHHHHhcCCCccchhHHHHHHHHHHHHHHHHHhcCCCCE
Confidence 99999873 678899999999999999999999999999999999998766655668899999999999999999999
Q ss_pred EEEccCCccchhhhhcccchhHHHHHHHHHHHHHHhhhhc--CCC------CCCCCceEEEecCCCCccchhhhhhhhhH
Q 007570 139 VRYRAAKSLDAMTITTFRDLVPTKLAAGVWNCLMKYKQTI--QNF------PMSETCELLILDRSVDQIAPIIHEWTYDA 210 (598)
Q Consensus 139 Ir~~~~~~~~a~~~~~~~~~v~~~la~~l~~~l~~~~~~~--~~~------~~~~~~~LiIlDR~~DliTPLlh~~TYqa 210 (598)
|||..+. .|+++|+.+..++..+.... ..| +...+++|||+||++|++|||+|||||||
T Consensus 221 IRy~~g~-------------~a~~va~~L~~~l~~~~~~~~~~lf~~~~~~~~~~~~~LiIlDR~~DlvTPLlhq~TYqa 287 (671)
T 1mqs_A 221 IRAAKGG-------------PAEIIAEKLGTKLRDFVINTNSSSTSTLQGNDSLERGVLIILDRNIDFASMFSHSWIYQC 287 (671)
T ss_dssp EEECSSS-------------HHHHHHHHHHHHHHHHHHTTCC------------CCCEEEEEEGGGCSHHHHCCCCBHHH
T ss_pred EEeCCCC-------------hHHHHHHHHHHHHHHHHhhccccccccccCCCCCCCCEEEEecCCccchhhhcccchHHH
Confidence 9985442 24455555555554432211 123 12357899999999999999999999999
Q ss_pred HhhhhcccCCCeEEeeccCCCCC-------CCcceEEecCCCChhHHHhhcCcHHHHHHHHHHHHHHHHHhhhHhhhhc-
Q 007570 211 ICHDLLNLEGNKYVHEVPSKTDG-------PPEKKEVLLEEHDPIWVELRHAHIADASERLHEKMTGFVSKNKAAQIQN- 282 (598)
Q Consensus 211 Ll~dl~~I~~~~v~~~~~~~~g~-------~~~~k~~~l~~~D~i~~~~R~~~~~~v~~~l~~~~~~~~~~~~~~~i~~- 282 (598)
|+||+|||++|.|+++.+...++ ..+++++.|+++|+||.++||+||++|+..|.+++++|+++++ ++++
T Consensus 288 Li~Dll~I~~n~v~~~~~~~~~~~~~~~~~~~~~k~~~L~~~D~~w~~~r~~~f~~v~~~l~~~~~~~~~~~~--~~~~~ 365 (671)
T 1mqs_A 288 MVFDIFKLSRNTVTIPLESKENGTDNTTAKPLATKKYDIEPNDFFWMENSHLPFPEAAENVEAALNTYKEEAA--EITRK 365 (671)
T ss_dssp HHHHHTTCCSSCEEECC---------------CCEEECCCSSCTTHHHHSSSBHHHHHHHHHHHHHHHHHHHH--HHHHH
T ss_pred HHHHHhhccCCEEEEeccCCCccccccccccccceEEecCCCCHHHHHHhcccHHHHHHHHHHHHHHHHHHHH--HHhcc
Confidence 99999999999999976322110 1345889999999999999999999999999999999998754 3332
Q ss_pred -CCC------CCCCCCHHHHHHHHHhchhhHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHhhhcCCCchHHHHHHh
Q 007570 283 -GSR------DGSNLSTRDLQKLVQALPQYSEQIDKLSLHVEIAGKINRIIRETGLRELGQLEQDLVFGDAGFKDVIKFL 355 (598)
Q Consensus 283 -~~~------~~~~~~~~~~~~~v~~lp~~~~~~~~l~~H~~l~~~~~~~i~~~~l~~~~~lEq~i~~~~~~~~~l~~~i 355 (598)
+.. +....+++||++||++||+++++++++++|++||++|++.+++++|++++++||+|+ +....+.++++|
T Consensus 366 ~~~~~~~~~~~~~~~s~~~lk~~V~~LP~~~~~~~~l~~H~~ia~~l~~~i~~~~l~~~~e~EQ~l~-~~~~~~~i~~ll 444 (671)
T 1mqs_A 366 TGVTNISDLDPNSNNDTVQIQEVVKKLPELTAKKNTIDTHMNIFAALLSQLESKSLDTFFEVEQDPG-STKTRSRFLDIL 444 (671)
T ss_dssp C--------------------CCCCSCHHHHHHHHHHHHHHHHHHHHHHHHHTTTCHHHHHHTSCCS-SHHHHHHHHHHT
T ss_pred cCccCcccccccccccHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHh-cCchHHHHHHHH
Confidence 100 122467999999999999999999999999999999999999999999999999997 433455788888
Q ss_pred hhcCCCChhhHHHHHHHHHHhcCCCCChhHH---HHHHHHcCCCHHHHHHHHHHHHhcCcc---c-cCC----c-c---c
Q 007570 356 TAKEDITRENKLRLLMIVASIYPEKFEGEKG---LNLMKLAKLTADDMTAVNNMRLLGGAL---E-SKK----S-T---I 420 (598)
Q Consensus 356 ~~~~~~~~~dklRLl~L~~l~~~~g~~~~~~---~~l~q~~gl~~~~~~~l~~L~~lg~~~---~-~~~----~-~---~ 420 (598)
.+....+..|||||+|||++++++|++++++ +++++.+|++...+..+.++..++... . .+. + . .
T Consensus 445 ~~~~~~~~~dkLRLl~Ly~l~~~~g~~~~~~~~l~~~l~~~G~~~~~~~~l~~~~~l~~~~~l~~~~~~~~~~~~~~~~~ 524 (671)
T 1mqs_A 445 KDGKTNNLEDKLRSFIVLYLTSTTGLPKDFVQNVENYFKENDYDINALKYVYKLREFMQLSNMSLQNKSLEDGSDSAFKP 524 (671)
T ss_dssp TSCCSTTHHHHHHHHHHHHHHCSSCCCHHHHHHHHHHHHTTTCCCTHHHHHHHHHHHHHHHHHHSCCCCC----------
T ss_pred hCcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcccccccccccccccccccccc
Confidence 7422459999999999999998328988774 456678999755566666655443211 0 000 0 0 0
Q ss_pred Cc-CccchhhhhhhhhcccCCCCCCcccccc-----cchhHHHHHHHHHhcC-----C--CCCCCCCcccCCCCCCCCCC
Q 007570 421 GA-FSLKFDIHKKKRAARKDRSGGEETWQLS-----RFYPMIEELVEKLGKN-----E--LSKDDYPCMNDPSPTFHGTT 487 (598)
Q Consensus 421 ~~-~~~~f~~~k~~~~~~~~~~~~~~~y~~s-----~y~P~i~~lve~~~~~-----~--l~~~~~p~i~~~~~~~~~~~ 487 (598)
+. |+..+. +-..+....+. .......+ .+.|.+.++++.+.++ + ++.++||+++ |... .|.
T Consensus 525 ~dl~~~~~~-r~~~~~~~~g~--~~~~~~v~n~~P~~~~~~l~~ive~l~~~~~~~~k~~l~~~~y~~~~-p~~~-~~~- 598 (671)
T 1mqs_A 525 SNLTLSGIY-GLTEGKLQGGV--GSLISGIKKLLPEKKTIPITNVVDAIMDPLNSSQKNLETTDSYLYID-PKIT-RGS- 598 (671)
T ss_dssp --------C-HHHHHTTTSSC--SSSHHHHHHTCCCCCCCHHHHHHHHHHCSTTSCHHHHHHHTTSEEEC-TTSS-SCS-
T ss_pred cccccccHH-HHHHHHhccch--hhHHHhHHhhCCCcccchHHHHHHHHHhccccccccCCCccCceeeC-CCCc-CCC-
Confidence 11 221110 00001110000 00011123 3455689999999998 3 5668899986 3210 000
Q ss_pred CCCcCCCCcccccccCCCCCcccCCCCCCCCCCccccccccccccccCCCeEEEEEEcCCCHHHHHHHHHHHhhC---CC
Q 007570 488 PSALTNEVPAAHSMRSRRTPTWARPRSSDDGYSSDSVLKHASSDFKKMGQRIFVFIVGGTTRSELRVCHKLTAKL---NR 564 (598)
Q Consensus 488 ~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~viVFviGGvTy~Ei~al~~L~~~~---~~ 564 (598)
++... .+...+++|||||||+||+|++++|+|+++. ++
T Consensus 599 -----------~~~~~----------------------------~~~~~~~viVFvVGG~Ty~E~~~l~~l~~~~~~~~~ 639 (671)
T 1mqs_A 599 -----------HTRKP----------------------------KRQSYNKSLVFVVGGGNYLEYQNLQEWAHSQLHNPK 639 (671)
T ss_dssp -----------SSCCC----------------------------CCCCCSEEEEEEETCBCHHHHHHHHHHHTTCCSSCC
T ss_pred -----------CCCCc----------------------------ccCCCCeEEEEEECCccHHHHHHHHHHHhhccCCCc
Confidence 00000 0124689999999999999999999999883 79
Q ss_pred eEEEccCcccChhHHHHHHhccCCCCC
Q 007570 565 EVVLGSSSLDDPPQFITKLKMLTAHEL 591 (598)
Q Consensus 565 ~iiigsT~il~~~~fl~~l~~l~~~~~ 591 (598)
+|+||||+|+||++||++|..|++...
T Consensus 640 ~viiGsT~I~n~~~Fl~~l~~l~~~~~ 666 (671)
T 1mqs_A 640 KVMYGSTAITTPAEFLNEISRLGASNS 666 (671)
T ss_dssp EEEEEESSBCCHHHHHHHHHHHHHHTT
T ss_pred eEEEeeccccCHHHHHHHHHHhCcccc
Confidence 999999999999999999999987653
No 7
>1y9j_A SEC1 family domain containing protein 1; membrane traffic, SLY1, SM proteins, snares, protein protein transport; NMR {Rattus norvegicus}
Probab=99.43 E-value=4.2e-14 Score=129.51 Aligned_cols=83 Identities=19% Similarity=0.304 Sum_probs=71.8
Q ss_pred CCCCCchhhhhhhhhc------cccee-------------EEEEEeCCHHHHHHHHHhhcCCCCCcceEEEEecCCCCHH
Q 007570 1 MDETSLSPFSLCMHVC------VLLHM-------------LIYCLFCYFCSVVAFLSDMSGKSPLYKKAFVFFSSPISRE 61 (598)
Q Consensus 1 ~~~~~~~~~~~~~~~~------~~~~~-------------aIY~i~Pt~~si~~i~~d~~~~~~~Y~~~~i~Ft~~~~~~ 61 (598)
+|+.+.++|++||+.+ |+.+. |||||+||.+||++|++||+. |+|++|||||++.+|+.
T Consensus 55 lD~~t~~iiS~~~~~sdLl~~gVtlve~i~~~R~p~~~~~aIYfv~Pt~enI~~i~~D~~~--~~Y~~y~i~Ft~~i~~~ 132 (159)
T 1y9j_A 55 YDRFGQDIISPLLSVKELRDMGITLHLLLHSDRDPIRDVPAVYFVMPTEENIDRLCQDLRN--QLYESYYLNFISAISRS 132 (159)
T ss_dssp ECHHHHHHHTTTCCHHHHHHHTEEEEEETTSCCCCBTTSCCEEEECCCHHHHHHHHHHHHH--TCBSEEEEEESSCCCHH
T ss_pred EecccHHHHHHHhCHHHHHhCCcEEEeeccCCCCCCCCCCEEEEecCCHHHHHHHHHHhhh--cccCeEEEEEcCCCCHH
Confidence 4777888888888755 55544 999999999999999999974 89999999999999999
Q ss_pred HHHHHHh---CCCccccccceeEEecc
Q 007570 62 LVTHIKK---DSTVLPRIGALREMNLE 85 (598)
Q Consensus 62 ~le~la~---~~~~~~~i~~i~e~~~d 85 (598)
++++||+ +.+..++|+.|.|+++|
T Consensus 133 lle~LA~~~~~~d~~~~V~~V~e~y~d 159 (159)
T 1y9j_A 133 KLEDIANAALAANAVTQVAKVFDQYLN 159 (159)
T ss_dssp HHHHHHHHHHTTTCEEEEECCSTTTCC
T ss_pred HHHHHHhccccCCcccceeeeehhhcC
Confidence 9999996 35678899999988775
No 8
>3he4_B Synzip5; heterodimeric coiled-coil, de novo protein; 2.46A {Artificial gene}
Probab=41.18 E-value=74 Score=20.90 Aligned_cols=33 Identities=18% Similarity=0.361 Sum_probs=26.2
Q ss_pred CCHHHHHHHHHhchhhHHHHHHHHHHHHHHHHH
Q 007570 290 LSTRDLQKLVQALPQYSEQIDKLSLHVEIAGKI 322 (598)
Q Consensus 290 ~~~~~~~~~v~~lp~~~~~~~~l~~H~~l~~~~ 322 (598)
.++.++++++..|.+-....+++.-|+..+.+-
T Consensus 3 ntvkelknyiqeleernaelknlkehlkfakae 35 (46)
T 3he4_B 3 NTVKELKNYIQELEERNAELKNLKEHLKFAKAE 35 (46)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHhHHHHhHHHHHHHHHHH
Confidence 477889999988888877888888888777553
No 9
>1tqx_A D-ribulose-5-phosphate 3-epimerase, putative; structural genomics, protein structure initiative, PSI; 2.00A {Plasmodium falciparum} SCOP: c.1.2.2
Probab=21.84 E-value=58 Score=30.80 Aligned_cols=37 Identities=8% Similarity=0.227 Sum_probs=29.3
Q ss_pred eEEEEEEcCCCHHHHHHHHHHHhhCCCeEEEccCcccChhH
Q 007570 538 RIFVFIVGGTTRSELRVCHKLTAKLNREVVLGSSSLDDPPQ 578 (598)
Q Consensus 538 ~viVFviGGvTy~Ei~al~~L~~~~~~~iiigsT~il~~~~ 578 (598)
.+-|.|.||++-.-+..+.+ .|.++++.++.|+..++
T Consensus 173 ~~~I~VdGGI~~~ti~~~~~----aGAd~~V~GsaIf~~~d 209 (227)
T 1tqx_A 173 NLNIQVDGGLNIETTEISAS----HGANIIVAGTSIFNAED 209 (227)
T ss_dssp TCEEEEESSCCHHHHHHHHH----HTCCEEEESHHHHTCSS
T ss_pred CCeEEEECCCCHHHHHHHHH----cCCCEEEEeHHHhCCCC
Confidence 56789999999876666554 48999999999997543
No 10
>1y0e_A Putative N-acetylmannosamine-6-phosphate 2-epimer; mannac-6-P epimerase, NANE, structural genomics, protein STR initiative, PSI; 1.95A {Staphylococcus aureus subsp} SCOP: c.1.2.5
Probab=21.17 E-value=77 Score=29.28 Aligned_cols=45 Identities=11% Similarity=0.165 Sum_probs=36.3
Q ss_pred eEEEEEEcCC-CHHHHHHHHHHHhhCCCeEEEccCcccChhHHHHHHhcc
Q 007570 538 RIFVFIVGGT-TRSELRVCHKLTAKLNREVVLGSSSLDDPPQFITKLKML 586 (598)
Q Consensus 538 ~viVFviGGv-Ty~Ei~al~~L~~~~~~~iiigsT~il~~~~fl~~l~~l 586 (598)
.+-|+..||+ |...+..+.. .|.+.++.++.++.|....+.+.+.
T Consensus 175 ~ipvia~GGI~~~~~~~~~~~----~Gad~v~vG~al~~p~~~~~~~~~~ 220 (223)
T 1y0e_A 175 DAKVIAEGNVITPDMYKRVMD----LGVHCSVVGGAITRPKEITKRFVQV 220 (223)
T ss_dssp CSEEEEESSCCSHHHHHHHHH----TTCSEEEECHHHHCHHHHHHHHHHT
T ss_pred CCCEEEecCCCCHHHHHHHHH----cCCCEEEEChHHcCcHHHHHHHHHH
Confidence 4678999999 8888887765 3788888888999999888887643
Done!