BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 007571
(598 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2DBA|A Chain A, The Solution Structure Of The Tetratrico Peptide Repeat Of
Human Smooth Muscle Cell Associated Protein-1, Isoform 2
Length = 148
Score = 54.7 bits (130), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 32/96 (33%), Positives = 57/96 (59%), Gaps = 5/96 (5%)
Query: 391 VKLEGNSLFSAGNISGAASKYSEALALCPMRSKKERVVLYSNRAQCHLLMQQPLAAISDA 450
++ EGN LF G+ GA + Y++AL L + +++ VL+ NRA CHL ++ A ++A
Sbjct: 31 LRKEGNELFKCGDYGGALAAYTQALGL--DATPQDQAVLHRNRAACHLKLEDYDKAETEA 88
Query: 451 TRALCLHNPLNRHAKSLWRRAQAYDMLALAKESLLD 486
++A+ K+L+RR+QA + L +++LD
Sbjct: 89 SKAI---EKDGGDVKALYRRSQALEKLGRLDQAVLD 121
>pdb|3Q47|B Chain B, Crystal Structure Of Tpr Domain Of Chip Complexed With
Pseudophosphorylated Smad1 Peptide
pdb|3Q49|B Chain B, Crystal Structure Of The Tpr Domain Of Chip Complexed With
Hsp70-C Peptide
pdb|3Q4A|B Chain B, Crystal Structure Of The Tpr Domain Of Chip Complexed With
Phosphorylated Smad1 Peptide
Length = 137
Score = 50.4 bits (119), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 30/75 (40%), Positives = 42/75 (56%), Gaps = 5/75 (6%)
Query: 382 HIKQAAALVVKLEGNSLFSAGNISGAASKYSEALALCPMRSKKERVVLYSNRAQCHLLMQ 441
H+K +A +K +GN LF AA+ Y A+ P+ + V Y+NRA C+L MQ
Sbjct: 3 HMKSPSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVA-----VYYTNRALCYLKMQ 57
Query: 442 QPLAAISDATRALCL 456
QP A++D RAL L
Sbjct: 58 QPEQALADCRRALEL 72
>pdb|2C2L|A Chain A, Crystal Structure Of The Chip U-Box E3 Ubiquitin Ligase
pdb|2C2L|B Chain B, Crystal Structure Of The Chip U-Box E3 Ubiquitin Ligase
pdb|2C2L|C Chain C, Crystal Structure Of The Chip U-Box E3 Ubiquitin Ligase
pdb|2C2L|D Chain D, Crystal Structure Of The Chip U-Box E3 Ubiquitin Ligase
Length = 281
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 28/70 (40%), Positives = 39/70 (55%), Gaps = 5/70 (7%)
Query: 387 AALVVKLEGNSLFSAGNISGAASKYSEALALCPMRSKKERVVLYSNRAQCHLLMQQPLAA 446
+A +K +GN LF AA+ Y A+ P+ + V Y+NRA C+L MQQP A
Sbjct: 3 SAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVA-----VYYTNRALCYLKMQQPEQA 57
Query: 447 ISDATRALCL 456
++D RAL L
Sbjct: 58 LADCRRALEL 67
>pdb|3FP2|A Chain A, Crystal Structure Of Tom71 Complexed With Hsp82 C-Terminal
Fragment
pdb|3FP3|A Chain A, Crystal Structure Of Tom71
pdb|3FP4|A Chain A, Crystal Structure Of Tom71 Complexed With Ssa1 C-Terminal
Fragment
Length = 537
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 34/110 (30%), Positives = 54/110 (49%), Gaps = 9/110 (8%)
Query: 384 KQAAALVVKLEGNSLFSAGNISGAASKYSEALALCPMRSKKERVVLYSNRAQCHLLMQQP 443
+QA A+ +K GN F+A N + A Y A+ L P V YSN + C++
Sbjct: 21 RQAYAVQLKNRGNHFFTAKNFNEAIKYYQYAIELDP-----NEPVFYSNISACYISTGDL 75
Query: 444 LAAISDATRALCLHNPLNRHAKSLWRRAQAYDMLALAKESLLD-AILFIN 492
I T+AL + H+K+L RRA A + L +++ D ++L +N
Sbjct: 76 EKVIEFTTKALEIK---PDHSKALLRRASANESLGNFTDAMFDLSVLSLN 122
>pdb|3LCA|A Chain A, Structure Of Tom71 Complexed With Hsp70 Ssa1 C Terminal
Tail Indicating Conformational Plasticity
Length = 533
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 34/110 (30%), Positives = 54/110 (49%), Gaps = 9/110 (8%)
Query: 384 KQAAALVVKLEGNSLFSAGNISGAASKYSEALALCPMRSKKERVVLYSNRAQCHLLMQQP 443
+QA A+ +K GN F+A N + A Y A+ L P V YSN + C++
Sbjct: 17 RQAYAVQLKNRGNHFFTAKNFNEAIKYYQYAIELDP-----NEPVFYSNISACYISTGDL 71
Query: 444 LAAISDATRALCLHNPLNRHAKSLWRRAQAYDMLALAKESLLD-AILFIN 492
I T+AL + H+K+L RRA A + L +++ D ++L +N
Sbjct: 72 EKVIEFTTKALEIK---PDHSKALLRRASANESLGNFTDAMFDLSVLSLN 118
>pdb|1WAO|1 Chain 1, Pp5 Structure
pdb|1WAO|2 Chain 2, Pp5 Structure
pdb|1WAO|3 Chain 3, Pp5 Structure
pdb|1WAO|4 Chain 4, Pp5 Structure
Length = 477
Score = 39.7 bits (91), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 28/96 (29%), Positives = 46/96 (47%), Gaps = 8/96 (8%)
Query: 391 VKLEGNSLFSAGNISGAASKYSEALALCPMRSKKERVVLYSNRAQCHLLMQQPLAAISDA 450
+K + N F A + A YS+A+ L P + + Y NR+ +L + A+ DA
Sbjct: 9 LKTQANDYFKAKDYENAIKFYSQAIELNPSNA-----IYYGNRSLAYLRTECYGYALGDA 63
Query: 451 TRALCLHNPLNRHAKSLWRRAQAYDMLALAKESLLD 486
TRA+ L ++ K +RRA + L + +L D
Sbjct: 64 TRAIELD---KKYIKGYYRRAASNMALGKFRAALRD 96
>pdb|2LNI|A Chain A, Solution Nmr Structure Of Stress-Induced-Phosphoprotein 1
Sti1 From Homo Sapiens, Northeast Structural Genomics
Consortium Target Hr4403e
Length = 133
Score = 38.5 bits (88), Expect = 0.010, Method: Composition-based stats.
Identities = 24/69 (34%), Positives = 35/69 (50%), Gaps = 5/69 (7%)
Query: 388 ALVVKLEGNSLFSAGNISGAASKYSEALALCPMRSKKERVVLYSNRAQCHLLMQQPLAAI 447
AL+VK +GN F G+ A Y+EA+ P +K LYSNRA C+ + + A+
Sbjct: 16 ALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAK-----LYSNRAACYTKLLEFQLAL 70
Query: 448 SDATRALCL 456
D + L
Sbjct: 71 KDCEECIQL 79
>pdb|2BUG|A Chain A, Solution Structure Of The Tpr Domain From Protein
Phosphatase 5 In Complex With Hsp90 Derived Peptide
Length = 140
Score = 38.5 bits (88), Expect = 0.011, Method: Composition-based stats.
Identities = 32/107 (29%), Positives = 51/107 (47%), Gaps = 10/107 (9%)
Query: 380 DLHIKQAAALVVKLEGNSLFSAGNISGAASKYSEALALCPMRSKKERVVLYSNRAQCHLL 439
D +K+A L K + N F A + A YS+A+ L P + Y NR+ +L
Sbjct: 15 DGALKRAEEL--KTQANDYFKAKDYENAIKFYSQAIELNP-----SNAIYYGNRSLAYLR 67
Query: 440 MQQPLAAISDATRALCLHNPLNRHAKSLWRRAQAYDMLALAKESLLD 486
+ A++DATRA+ L ++ K +RRA + L + +L D
Sbjct: 68 TECYGYALNDATRAIELD---KKYIKGYYRRAASNMALGKFRAALRD 111
>pdb|1A17|A Chain A, Tetratricopeptide Repeats Of Protein Phosphatase 5
Length = 166
Score = 37.7 bits (86), Expect = 0.017, Method: Composition-based stats.
Identities = 32/107 (29%), Positives = 50/107 (46%), Gaps = 10/107 (9%)
Query: 380 DLHIKQAAALVVKLEGNSLFSAGNISGAASKYSEALALCPMRSKKERVVLYSNRAQCHLL 439
D +K+A L K + N F A + A YS+A+ L P + Y NR+ +L
Sbjct: 7 DGALKRAEEL--KTQANDYFKAKDYENAIKFYSQAIELNP-----SNAIYYGNRSLAYLR 59
Query: 440 MQQPLAAISDATRALCLHNPLNRHAKSLWRRAQAYDMLALAKESLLD 486
+ A+ DATRA+ L ++ K +RRA + L + +L D
Sbjct: 60 TECYGYALGDATRAIELD---KKYIKGYYRRAASNMALGKFRAALRD 103
>pdb|2GW1|A Chain A, Crystal Structure Of The Yeast Tom70
pdb|2GW1|B Chain B, Crystal Structure Of The Yeast Tom70
Length = 514
Score = 37.0 bits (84), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 33/110 (30%), Positives = 52/110 (47%), Gaps = 10/110 (9%)
Query: 384 KQAAALVVKLEGNSLFSAGNISGAASKYSEALALCPMRSKKERVVLYSNRAQCHLLMQQP 443
K AL +K +GN F A Y+ AL L KE V YSN + C++ +
Sbjct: 2 KDKYALALKDKGNQFFRNKKYDDAIKYYNWALEL------KEDPVFYSNLSACYVSVGDL 55
Query: 444 LAAISDATRALCLHNPLNRHAKSLWRRAQAYDMLALAKESLLD-AILFIN 492
+ +T+AL L ++K L RRA A + L +++ D ++L +N
Sbjct: 56 KKVVEMSTKALELKPD---YSKVLLRRASANEGLGKFADAMFDLSVLSLN 102
>pdb|1ELW|A Chain A, Crystal Structure Of The Tpr1 Domain Of Hop In Complex
With A Hsc70 Peptide
pdb|1ELW|B Chain B, Crystal Structure Of The Tpr1 Domain Of Hop In Complex
With A Hsc70 Peptide
Length = 118
Score = 34.7 bits (78), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 23/66 (34%), Positives = 30/66 (45%), Gaps = 5/66 (7%)
Query: 391 VKLEGNSLFSAGNISGAASKYSEALALCPMRSKKERVVLYSNRAQCHLLMQQPLAAISDA 450
+K +GN S GNI A YSEA+ L P VLYSNR+ + A D
Sbjct: 7 LKEKGNKALSVGNIDDALQCYSEAIKLDPHNH-----VLYSNRSAAYAKKGDYQKAYEDG 61
Query: 451 TRALCL 456
+ + L
Sbjct: 62 CKTVDL 67
>pdb|4APO|A Chain A, Aip Tpr Domain In Complex With Human Tomm20 Peptide
pdb|4APO|B Chain B, Aip Tpr Domain In Complex With Human Tomm20 Peptide
Length = 165
Score = 34.7 bits (78), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 28/116 (24%), Positives = 53/116 (45%), Gaps = 16/116 (13%)
Query: 384 KQAAALVVKLEGNSLFSAGNISGAASKYSEALALCPMRSKKER-------------VVLY 430
K A ++ EGN L+ G++ AA+KY +A+A KE+ L
Sbjct: 10 KAKAVPLIHQEGNRLYREGHVKEAAAKYYDAIACLKNLQMKEQPGSPEWIQLDQQITPLL 69
Query: 431 SNRAQCHLLMQQPLAAISDATRALCLHNPLNRHAKSLWRRAQAYDMLALAKESLLD 486
N QC L++++ + + L N + + K+ ++R +A+ + A+E+ D
Sbjct: 70 LNYCQCKLVVEEYYEVLDHCSSIL---NKYDDNVKAYFKRGKAHAAVWNAQEAQAD 122
>pdb|4AIF|A Chain A, Aip Tpr Domain In Complex With Human Hsp90 Peptide
pdb|4AIF|B Chain B, Aip Tpr Domain In Complex With Human Hsp90 Peptide
Length = 144
Score = 33.9 bits (76), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 28/116 (24%), Positives = 53/116 (45%), Gaps = 16/116 (13%)
Query: 384 KQAAALVVKLEGNSLFSAGNISGAASKYSEALALCPMRSKKER-------------VVLY 430
K A ++ EGN L+ G++ AA+KY +A+A KE+ L
Sbjct: 4 KAKAVPLIHQEGNRLYREGHVKEAAAKYYDAIACLKNLQMKEQPGSPEWIQLDQQITPLL 63
Query: 431 SNRAQCHLLMQQPLAAISDATRALCLHNPLNRHAKSLWRRAQAYDMLALAKESLLD 486
N QC L++++ + + L N + + K+ ++R +A+ + A+E+ D
Sbjct: 64 LNYCQCKLVVEEYYEVLDHCSSIL---NKYDDNVKAYFKRGKAHAAVWNAQEAQAD 116
>pdb|4GCO|A Chain A, Central Domain Of Stress-Induced Protein-1 (Sti-1) From
C.Elegans
Length = 126
Score = 33.5 bits (75), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 28/58 (48%), Gaps = 5/58 (8%)
Query: 392 KLEGNSLFSAGNISGAASKYSEALALCPMRSKKERVVLYSNRAQCHLLMQQPLAAISD 449
K +GN F G+ A Y+EA+ P E +LYSNRA C + + A+ D
Sbjct: 17 KNKGNEYFKKGDYPTAMRHYNEAVKRDP-----ENAILYSNRAACLTKLMEFQRALDD 69
>pdb|2VYI|A Chain A, Crystal Structure Of The Tpr Domain Of Human Sgt
pdb|2VYI|B Chain B, Crystal Structure Of The Tpr Domain Of Human Sgt
Length = 131
Score = 33.1 bits (74), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 31/119 (26%), Positives = 50/119 (42%), Gaps = 19/119 (15%)
Query: 386 AAALVVKLEGNSLFSAGNISGAASKYSEALALCPMRSKKERVVLYSNRAQCHLLMQQPLA 445
A A +K EGN N A Y +A+ L P + V + NRA + +
Sbjct: 10 AEAERLKTEGNEQMKVENFEAAVHFYGKAIELNPANA-----VYFCNRAAAYSKLGNYAG 64
Query: 446 AISDATRALCLHNPLNRHAKSLWRRAQAYDMLALAKESL---LDAILFINECSQSNDPD 501
A+ D RA+C+ ++ AY + LA SL ++A+ + + + DPD
Sbjct: 65 AVQDCERAICIDPAYSK----------AYGRMGLALSSLNKHVEAVAYYKKALEL-DPD 112
>pdb|1WA5|B Chain B, Crystal Structure Of The Exportin Cse1p Complexed With Its
Cargo (Kap60p) And Rangtp
Length = 530
Score = 31.6 bits (70), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 29/55 (52%)
Query: 102 VHAGVIPPLVELLRGRLTWVEQRVAVRALGHLATYPSTFPTVASHAEILELSIQL 156
+ AGV+P LVE +R + Q A AL ++A+ S V A+ + L IQL
Sbjct: 127 IQAGVVPRLVEFMRENQPEMLQLEAAWALTNIASGTSAQTKVVVDADAVPLFIQL 181
>pdb|2C1T|A Chain A, Structure Of The Kap60p:nup2 Complex
pdb|2C1T|B Chain B, Structure Of The Kap60p:nup2 Complex
Length = 454
Score = 31.2 bits (69), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 29/56 (51%)
Query: 101 AVHAGVIPPLVELLRGRLTWVEQRVAVRALGHLATYPSTFPTVASHAEILELSIQL 156
+ AGV+P LVE +R + Q A AL ++A+ S V A+ + L IQL
Sbjct: 39 VIQAGVVPRLVEFMRENQPEMLQLEAAWALTNIASGTSAQTKVVVDADAVPLFIQL 94
>pdb|1UN0|A Chain A, Crystal Structure Of Yeast Karyopherin (Importin) Alpha In
Complex With A Nup2p N-Terminal Fragment
pdb|1UN0|B Chain B, Crystal Structure Of Yeast Karyopherin (Importin) Alpha In
Complex With A Nup2p N-Terminal Fragment
Length = 443
Score = 31.2 bits (69), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 29/56 (51%)
Query: 101 AVHAGVIPPLVELLRGRLTWVEQRVAVRALGHLATYPSTFPTVASHAEILELSIQL 156
+ AGV+P LVE +R + Q A AL ++A+ S V A+ + L IQL
Sbjct: 39 VIQAGVVPRLVEFMRENQPEMLQLEAAWALTNIASGTSAQTKVVVDADAVPLFIQL 94
>pdb|1EE4|A Chain A, Crystal Structure Of Yeast Karyopherin (Importin) Alpha In
A Complex With A C-Myc Nls Peptide
pdb|1EE4|B Chain B, Crystal Structure Of Yeast Karyopherin (Importin) Alpha In
A Complex With A C-Myc Nls Peptide
Length = 423
Score = 30.8 bits (68), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 30/58 (51%)
Query: 99 ESAVHAGVIPPLVELLRGRLTWVEQRVAVRALGHLATYPSTFPTVASHAEILELSIQL 156
+ + AGV+P LVE +R + Q A AL ++A+ S V A+ + L IQL
Sbjct: 38 DVVIQAGVVPRLVEFMRENQPEMLQLEAAWALTNIASGTSAQTKVVVDADAVPLFIQL 95
>pdb|1EE5|A Chain A, Yeast Karyopherin (Importin) Alpha In A Complex With A
Nucleoplasmin Nls Peptide
Length = 424
Score = 30.8 bits (68), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 30/58 (51%)
Query: 99 ESAVHAGVIPPLVELLRGRLTWVEQRVAVRALGHLATYPSTFPTVASHAEILELSIQL 156
+ + AGV+P LVE +R + Q A AL ++A+ S V A+ + L IQL
Sbjct: 38 DVVIQAGVVPRLVEFMRENQPEMLQLEAAWALTNIASGTSAQTKVVVDADAVPLFIQL 95
>pdb|3KEW|A Chain A, Crystal Structure Of Probable Alanyl-Trna-Synthase From
Clostridium Perfringens
pdb|3KEW|B Chain B, Crystal Structure Of Probable Alanyl-Trna-Synthase From
Clostridium Perfringens
Length = 241
Score = 30.8 bits (68), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 22/82 (26%), Positives = 35/82 (42%), Gaps = 15/82 (18%)
Query: 6 PSKRRASILKFFRELPSQDDDGQVLPISGLWNTAM--AHPNDPEFIELGIFECMAALIWK 63
PSK+ +K R LP D++ +++ I GL A HP + +++
Sbjct: 161 PSKKELKKVKTRRALPKTDEEIRIVEIVGLDLNACCGVHPRNTRDLQV------------ 208
Query: 64 GLKNRRWLSHDQNIYIPYYAAH 85
+K RRW H I Y A +
Sbjct: 209 -IKIRRWEKHKNATRIEYVAGN 229
>pdb|1BK5|A Chain A, Karyopherin Alpha From Saccharomyces Cerevisiae
pdb|1BK5|B Chain B, Karyopherin Alpha From Saccharomyces Cerevisiae
Length = 422
Score = 30.8 bits (68), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 30/58 (51%)
Query: 99 ESAVHAGVIPPLVELLRGRLTWVEQRVAVRALGHLATYPSTFPTVASHAEILELSIQL 156
+ + AGV+P LVE +R + Q A AL ++A+ S V A+ + L IQL
Sbjct: 36 DVVIQAGVVPRLVEFMRENQPEMLQLEAAWALTNIASGTSAQTKVVVDADAVPLFIQL 93
>pdb|1BK6|A Chain A, Karyopherin Alpha (Yeast) + Sv40 T Antigen Nls
pdb|1BK6|B Chain B, Karyopherin Alpha (Yeast) + Sv40 T Antigen Nls
Length = 422
Score = 30.8 bits (68), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 30/58 (51%)
Query: 99 ESAVHAGVIPPLVELLRGRLTWVEQRVAVRALGHLATYPSTFPTVASHAEILELSIQL 156
+ + AGV+P LVE +R + Q A AL ++A+ S V A+ + L IQL
Sbjct: 36 DVVIQAGVVPRLVEFMRENQPEMLQLEAAWALTNIASGTSAQTKVVVDADAVPLFIQL 93
>pdb|1QZ2|A Chain A, Crystal Structure Of Fkbp52 C-Terminal Domain Complex With
The C-Terminal Peptide Meevd Of Hsp90
pdb|1QZ2|B Chain B, Crystal Structure Of Fkbp52 C-Terminal Domain Complex With
The C-Terminal Peptide Meevd Of Hsp90
pdb|1QZ2|C Chain C, Crystal Structure Of Fkbp52 C-Terminal Domain Complex With
The C-Terminal Peptide Meevd Of Hsp90
Length = 336
Score = 30.0 bits (66), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 40/178 (22%), Positives = 78/178 (43%), Gaps = 23/178 (12%)
Query: 388 ALVVKLEGNSLFSAGNISGAASKYSEALALC----------PMRSKKERVVLYSNRAQCH 437
+ +VK G F G A +Y + ++ +++ R+ + N A CH
Sbjct: 147 STIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCH 206
Query: 438 LLMQQPLAAISDATRALCLHNPLNRHAKSLWRRAQAY---DMLALAKESLLDAILFINEC 494
L +Q AAI +AL L + + K L+RR +A+ + LA+ + +L +
Sbjct: 207 LKLQAFSAAIESCNKALELD---SNNEKGLFRRGEAHLAVNDFELAR-ADFQKVLQLYPN 262
Query: 495 SQSNDPDLSLRQNKVPDYAERLVKKQMRAAWLFREAAIKHGGVHGEGNSGNIYGHETD 552
+++ L++ Q ++ +L +++ A +F A + E +SG+ H TD
Sbjct: 263 NKAAKTQLAVCQQRIR---RQLAREKKLYANMFERLAEEENKAKAEASSGD---HPTD 314
>pdb|2Y8K|A Chain A, Structure Of Ctgh5-Cbm6, An Arabinoxylan-Specific Xylanase
Length = 491
Score = 30.0 bits (66), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 17/57 (29%), Positives = 24/57 (42%), Gaps = 3/57 (5%)
Query: 463 HAKSLWRRAQAYDMLALAKESLLDAILFINECSQSNDPDLSLRQNKVPDYAERLVKK 519
+ + W A YD +A KE +A+ EC DP +K P YA + K
Sbjct: 31 YTSTEWTAAAPYDQIARVKELGFNAVHLYAECF---DPRYPAPGSKAPGYAVNEIDK 84
>pdb|2YYN|A Chain A, Crystal Sturcture Of Human Bromodomain Protein
pdb|2YYN|B Chain B, Crystal Sturcture Of Human Bromodomain Protein
pdb|2YYN|C Chain C, Crystal Sturcture Of Human Bromodomain Protein
pdb|2YYN|D Chain D, Crystal Sturcture Of Human Bromodomain Protein
Length = 135
Score = 29.6 bits (65), Expect = 4.4, Method: Composition-based stats.
Identities = 27/109 (24%), Positives = 54/109 (49%), Gaps = 9/109 (8%)
Query: 415 LALCPMRSKK-ERVVLYSNRAQCHLLMQQPLA-AISDATRALCLHNPLNRHAKSLWRRAQ 472
+ L P+ +K ER++L+ + L Q P+ + D + + NP++ ++ +R Q
Sbjct: 15 VKLTPIDKRKCERLLLFLYCHEMSLAFQDPVPLTVPDYYK--IIKNPMD--LSTIKKRLQ 70
Query: 473 A-YDMLALAKESLLDAILFINECSQSNDPDLSLRQN--KVPDYAERLVK 518
Y M + ++ + D L C++ N+PD + K+ +Y E L+K
Sbjct: 71 EDYSMYSKPEDFVADFRLIFQNCAEFNEPDSEVANAGIKLENYFEELLK 119
>pdb|3O33|A Chain A, Crystal Structure Of Trim24 Phd-Bromo In The Free State
pdb|3O33|B Chain B, Crystal Structure Of Trim24 Phd-Bromo In The Free State
pdb|3O33|C Chain C, Crystal Structure Of Trim24 Phd-Bromo In The Free State
pdb|3O33|D Chain D, Crystal Structure Of Trim24 Phd-Bromo In The Free State
pdb|3O34|A Chain A, Crystal Structure Of Trim24 Phd-Bromo Complexed With
H3(13-32)k23ac Peptide
pdb|3O35|A Chain A, Crystal Structure Of Trim24 Phd-Bromo Complexed With
H3(23-31)k27ac Peptide
pdb|3O35|B Chain B, Crystal Structure Of Trim24 Phd-Bromo Complexed With
H3(23-31)k27ac Peptide
pdb|3O36|A Chain A, Crystal Structure Of Trim24 Phd-Bromo Complexed With
H4(14-19)k16ac Peptide
pdb|3O36|B Chain B, Crystal Structure Of Trim24 Phd-Bromo Complexed With
H4(14-19)k16ac Peptide
pdb|3O37|A Chain A, Crystal Structure Of Trim24 Phd-Bromo Complexed With
H3(1-10)k4 Peptide
pdb|3O37|B Chain B, Crystal Structure Of Trim24 Phd-Bromo Complexed With
H3(1-10)k4 Peptide
pdb|3O37|C Chain C, Crystal Structure Of Trim24 Phd-Bromo Complexed With
H3(1-10)k4 Peptide
pdb|3O37|D Chain D, Crystal Structure Of Trim24 Phd-Bromo Complexed With
H3(1-10)k4 Peptide
Length = 184
Score = 29.6 bits (65), Expect = 4.5, Method: Composition-based stats.
Identities = 30/118 (25%), Positives = 58/118 (49%), Gaps = 10/118 (8%)
Query: 407 AASKYSEALA-LCPMRSKK-ERVVLYSNRAQCHLLMQQPLA-AISDATRALCLHNPLNRH 463
+ K +E L L P+ +K ER++L+ + L Q P+ + D + + NP++
Sbjct: 67 SEKKKTEGLVKLTPIDKRKCERLLLFLYCHEMSLAFQDPVPLTVPDYYK--IIKNPMD-- 122
Query: 464 AKSLWRRAQA-YDMLALAKESLLDAILFINECSQSNDPDLSLRQN--KVPDYAERLVK 518
++ +R Q Y M + ++ + D L C++ N+PD + K+ +Y E L+K
Sbjct: 123 LSTIKKRLQEDYSMYSKPEDFVADFRLIFQNCAEFNEPDSEVANAGIKLENYFEELLK 180
>pdb|3UQ3|A Chain A, Tpr2ab-Domain:phsp90-Complex Of Yeast Sti1
Length = 258
Score = 29.6 bits (65), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 37/153 (24%), Positives = 63/153 (41%), Gaps = 18/153 (11%)
Query: 311 AVPTLIDLAEITN--LGDHKKLGDS---IVNVLQDCIQLQGTV----RSSPSNRSKEQIE 361
A+ TL D E D+K + S I N L+ T+ +S +R+ + +
Sbjct: 57 AISTLNDAVEQGREMRADYKVISKSFARIGNAYHKLGDLKKTIEYYQKSLTEHRTADILT 116
Query: 362 ELLNSRQRLKWEKNMLKEDLHIKQAAALVVKLEGNSLFSAGNISGAASKYSEALALCPMR 421
+L N+ + LK + + ++ A +LEG F+ + A Y+E + P
Sbjct: 117 KLRNAEKELK----KAEAEAYVNPEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAP-- 170
Query: 422 SKKERVVLYSNRAQCHLLMQQPLAAISDATRAL 454
E YSNRA + AI+D +A+
Sbjct: 171 ---EDARGYSNRAAALAKLMSFPEAIADCNKAI 200
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.134 0.412
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 17,669,983
Number of Sequences: 62578
Number of extensions: 690792
Number of successful extensions: 1574
Number of sequences better than 100.0: 30
Number of HSP's better than 100.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 17
Number of HSP's that attempted gapping in prelim test: 1548
Number of HSP's gapped (non-prelim): 37
length of query: 598
length of database: 14,973,337
effective HSP length: 104
effective length of query: 494
effective length of database: 8,465,225
effective search space: 4181821150
effective search space used: 4181821150
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 54 (25.4 bits)