Query 007571
Match_columns 598
No_of_seqs 441 out of 2309
Neff 5.4
Searched_HMMs 46136
Date Thu Mar 28 12:25:26 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007571.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/007571hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0543 FKBP-type peptidyl-pro 99.9 5.9E-26 1.3E-30 240.0 14.1 165 326-496 146-323 (397)
2 KOG4234 TPR repeat-containing 99.8 2.9E-19 6.2E-24 174.8 18.1 124 371-497 78-201 (271)
3 KOG0553 TPR repeat-containing 99.8 1.3E-18 2.7E-23 178.7 13.6 106 384-497 77-182 (304)
4 KOG0547 Translocase of outer m 99.7 3.2E-17 6.8E-22 176.4 13.9 132 374-524 104-235 (606)
5 KOG0548 Molecular co-chaperone 99.6 2.2E-15 4.9E-20 163.9 15.8 118 386-524 356-473 (539)
6 KOG4642 Chaperone-dependent E3 99.6 9E-17 1.9E-21 160.7 3.8 192 387-596 9-211 (284)
7 KOG0545 Aryl-hydrocarbon recep 99.6 6.4E-15 1.4E-19 148.1 13.6 170 321-496 104-296 (329)
8 KOG4648 Uncharacterized conser 99.6 2.9E-15 6.3E-20 156.0 10.1 107 384-498 93-199 (536)
9 KOG0550 Molecular chaperone (D 99.6 2.9E-14 6.4E-19 151.4 14.6 108 385-496 246-353 (486)
10 KOG0551 Hsp90 co-chaperone CNS 99.5 1E-13 2.2E-18 144.2 12.9 106 386-495 79-184 (390)
11 KOG0548 Molecular co-chaperone 99.5 1.2E-13 2.5E-18 150.7 9.7 101 388-496 2-102 (539)
12 PLN03088 SGT1, suppressor of 99.4 1.3E-12 2.8E-17 139.5 16.0 101 388-496 2-102 (356)
13 TIGR00990 3a0801s09 mitochondr 99.4 1.6E-12 3.5E-17 147.1 16.9 110 373-494 115-224 (615)
14 KOG0376 Serine-threonine phosp 99.4 6.5E-13 1.4E-17 143.8 7.2 104 387-498 3-106 (476)
15 PRK15359 type III secretion sy 99.3 6.7E-11 1.5E-15 110.6 15.4 99 391-497 27-125 (144)
16 PRK15363 pathogenicity island 99.2 1.3E-10 2.9E-15 110.9 14.5 101 387-495 34-134 (157)
17 TIGR02552 LcrH_SycD type III s 99.2 6.1E-10 1.3E-14 100.5 15.2 103 387-497 16-118 (135)
18 PRK11189 lipoprotein NlpI; Pro 99.2 7.5E-10 1.6E-14 115.1 17.0 102 387-496 63-164 (296)
19 PF13414 TPR_11: TPR repeat; P 99.1 1.8E-10 3.9E-15 93.1 7.5 67 387-458 2-69 (69)
20 PRK10370 formate-dependent nit 99.1 3E-09 6.5E-14 104.9 15.8 104 386-497 71-177 (198)
21 cd00189 TPR Tetratricopeptide 99.0 4.3E-09 9.2E-14 83.6 12.1 97 391-495 3-99 (100)
22 KOG4626 O-linked N-acetylgluco 99.0 1.6E-09 3.4E-14 120.1 11.1 205 268-499 145-355 (966)
23 KOG0624 dsRNA-activated protei 99.0 5.5E-09 1.2E-13 109.8 13.9 103 387-497 37-139 (504)
24 TIGR02795 tol_pal_ybgF tol-pal 99.0 1.4E-08 3.1E-13 88.3 13.8 106 389-496 3-108 (119)
25 PF13414 TPR_11: TPR repeat; P 99.0 3.2E-09 6.9E-14 85.8 8.6 66 427-495 3-69 (69)
26 KOG4555 TPR repeat-containing 98.9 1E-08 2.2E-13 95.5 12.7 106 385-495 40-146 (175)
27 TIGR00990 3a0801s09 mitochondr 98.9 1.3E-08 2.8E-13 115.5 16.2 103 386-496 329-431 (615)
28 PF12895 Apc3: Anaphase-promot 98.9 5.6E-09 1.2E-13 88.2 7.6 84 400-490 1-84 (84)
29 TIGR02521 type_IV_pilW type IV 98.9 7.6E-08 1.6E-12 91.0 16.1 102 387-496 64-167 (234)
30 KOG0547 Translocase of outer m 98.9 2.3E-08 5.1E-13 108.8 14.1 134 385-537 323-461 (606)
31 KOG1308 Hsp70-interacting prot 98.9 1.4E-09 3.1E-14 114.2 4.4 105 384-496 110-214 (377)
32 CHL00033 ycf3 photosystem I as 98.8 8.7E-08 1.9E-12 90.9 15.0 105 386-495 33-144 (168)
33 KOG4626 O-linked N-acetylgluco 98.8 1.4E-08 3E-13 112.8 10.7 114 379-500 379-492 (966)
34 PRK02603 photosystem I assembl 98.8 8.4E-08 1.8E-12 91.6 14.5 92 384-480 31-122 (172)
35 PRK09782 bacteriophage N4 rece 98.8 1.2E-07 2.6E-12 113.5 17.7 103 388-498 609-711 (987)
36 PRK15359 type III secretion sy 98.7 7.6E-08 1.6E-12 90.1 11.1 85 386-478 56-140 (144)
37 TIGR02521 type_IV_pilW type IV 98.7 3.6E-07 7.8E-12 86.4 15.4 103 387-495 98-200 (234)
38 PRK12370 invasion protein regu 98.7 2.5E-07 5.5E-12 104.2 16.1 100 387-494 337-436 (553)
39 TIGR03302 OM_YfiO outer membra 98.7 2.4E-07 5.2E-12 91.6 13.8 106 387-497 32-148 (235)
40 KOG0624 dsRNA-activated protei 98.7 7.7E-07 1.7E-11 94.0 17.3 171 301-496 78-255 (504)
41 KOG1125 TPR repeat-containing 98.7 9.5E-08 2.1E-12 105.8 11.0 102 389-498 431-532 (579)
42 PRK15331 chaperone protein Sic 98.6 3.3E-07 7.2E-12 88.3 12.4 99 387-493 36-134 (165)
43 PLN02789 farnesyltranstransfer 98.6 4.3E-07 9.4E-12 96.2 14.4 134 357-498 40-176 (320)
44 KOG0550 Molecular chaperone (D 98.6 3.2E-08 7E-13 106.1 5.3 96 385-488 46-141 (486)
45 KOG1126 DNA-binding cell divis 98.6 5.9E-07 1.3E-11 100.9 14.4 130 385-535 486-615 (638)
46 PF13432 TPR_16: Tetratricopep 98.6 1.9E-07 4.2E-12 74.7 7.8 62 393-459 2-63 (65)
47 PRK12370 invasion protein regu 98.6 8.5E-07 1.8E-11 100.0 15.8 89 401-497 317-405 (553)
48 PF13525 YfiO: Outer membrane 98.6 3.8E-06 8.2E-11 82.9 18.5 110 387-498 4-124 (203)
49 KOG1310 WD40 repeat protein [G 98.6 1.4E-07 2.9E-12 103.6 8.9 104 385-496 371-477 (758)
50 PRK10803 tol-pal system protei 98.6 1.6E-06 3.4E-11 89.6 16.1 106 390-497 144-250 (263)
51 COG3063 PilF Tfp pilus assembl 98.5 9.7E-07 2.1E-11 89.1 13.0 100 386-493 33-132 (250)
52 PRK10866 outer membrane biogen 98.5 5.9E-06 1.3E-10 84.3 18.5 109 388-498 32-158 (243)
53 PRK11189 lipoprotein NlpI; Pro 98.5 9.4E-07 2E-11 92.0 12.9 92 402-497 40-131 (296)
54 PRK11788 tetratricopeptide rep 98.5 3E-06 6.4E-11 89.4 16.7 99 390-496 182-281 (389)
55 PRK15174 Vi polysaccharide exp 98.5 1.4E-06 3.1E-11 100.3 15.3 101 388-496 284-384 (656)
56 PF13512 TPR_18: Tetratricopep 98.5 2.4E-06 5.2E-11 80.7 14.1 109 388-498 10-133 (142)
57 TIGR03302 OM_YfiO outer membra 98.5 2.8E-06 6.1E-11 84.0 14.9 104 388-496 70-198 (235)
58 KOG1155 Anaphase-promoting com 98.5 1.1E-06 2.4E-11 95.6 12.5 120 394-534 336-455 (559)
59 PRK15174 Vi polysaccharide exp 98.5 1.5E-06 3.2E-11 100.2 14.5 103 387-497 245-351 (656)
60 TIGR02917 PEP_TPR_lipo putativ 98.5 3.2E-06 7E-11 95.8 16.8 100 388-496 770-869 (899)
61 PRK15179 Vi polysaccharide bio 98.5 2.9E-06 6.3E-11 98.4 16.5 97 388-492 86-182 (694)
62 TIGR02917 PEP_TPR_lipo putativ 98.5 3.1E-06 6.7E-11 95.9 16.5 102 387-496 124-225 (899)
63 PF13371 TPR_9: Tetratricopept 98.5 1.1E-06 2.3E-11 71.6 9.3 69 395-471 2-70 (73)
64 KOG1126 DNA-binding cell divis 98.5 2.6E-07 5.6E-12 103.7 7.4 104 385-496 418-521 (638)
65 PF13432 TPR_16: Tetratricopep 98.5 6.2E-07 1.3E-11 71.7 7.6 63 431-496 1-63 (65)
66 PRK10370 formate-dependent nit 98.5 2.6E-06 5.7E-11 84.1 13.6 91 400-498 51-144 (198)
67 TIGR02552 LcrH_SycD type III s 98.4 2.4E-06 5.1E-11 77.1 11.8 80 409-496 4-83 (135)
68 PRK11788 tetratricopeptide rep 98.4 4.9E-06 1.1E-10 87.7 16.0 103 386-496 212-314 (389)
69 PRK09782 bacteriophage N4 rece 98.4 3.4E-06 7.3E-11 101.2 16.3 96 394-498 582-677 (987)
70 PRK15179 Vi polysaccharide bio 98.4 3.1E-06 6.7E-11 98.1 15.3 103 386-496 118-220 (694)
71 PF14559 TPR_19: Tetratricopep 98.4 1E-06 2.3E-11 70.7 7.6 67 398-472 1-67 (68)
72 COG5010 TadD Flp pilus assembl 98.4 5.4E-06 1.2E-10 84.8 14.1 101 388-496 100-200 (257)
73 KOG0546 HSP90 co-chaperone CPR 98.3 6.3E-07 1.4E-11 94.9 6.0 109 385-496 219-341 (372)
74 PF09976 TPR_21: Tetratricopep 98.3 8.5E-06 1.8E-10 75.8 12.3 99 387-491 47-145 (145)
75 PRK11447 cellulose synthase su 98.3 1.2E-05 2.5E-10 98.2 16.1 100 390-497 605-704 (1157)
76 PRK11447 cellulose synthase su 98.3 8.7E-06 1.9E-10 99.3 15.0 109 385-496 300-417 (1157)
77 PLN03098 LPA1 LOW PSII ACCUMUL 98.3 3.1E-06 6.6E-11 92.8 9.7 71 384-459 71-144 (453)
78 PF13429 TPR_15: Tetratricopep 98.2 5.2E-06 1.1E-10 84.8 10.4 102 387-496 145-246 (280)
79 PRK10049 pgaA outer membrane p 98.2 1.5E-05 3.3E-10 93.3 15.6 103 387-498 48-150 (765)
80 PRK10049 pgaA outer membrane p 98.2 1.2E-05 2.7E-10 94.1 14.6 102 388-497 359-460 (765)
81 COG4235 Cytochrome c biogenesi 98.2 2E-05 4.3E-10 82.2 14.5 107 384-498 152-261 (287)
82 PF13424 TPR_12: Tetratricopep 98.2 3.8E-06 8.3E-11 69.4 7.3 70 425-494 3-76 (78)
83 PLN02789 farnesyltranstransfer 98.2 1.9E-05 4.1E-10 83.9 14.3 91 398-496 47-140 (320)
84 KOG1155 Anaphase-promoting com 98.2 1.8E-05 3.9E-10 86.4 14.2 102 386-495 362-463 (559)
85 KOG1173 Anaphase-promoting com 98.2 5.9E-06 1.3E-10 91.7 10.7 106 388-496 414-521 (611)
86 PLN03088 SGT1, suppressor of 98.2 1E-05 2.2E-10 86.8 12.3 85 387-479 35-119 (356)
87 PF13371 TPR_9: Tetratricopept 98.2 4.9E-06 1.1E-10 67.7 7.5 60 434-496 2-61 (73)
88 PLN03098 LPA1 LOW PSII ACCUMUL 98.2 1.3E-05 2.8E-10 87.9 11.5 69 417-493 70-141 (453)
89 PF13424 TPR_12: Tetratricopep 98.1 1.9E-05 4.1E-10 65.3 9.4 70 386-456 3-75 (78)
90 PF12688 TPR_5: Tetratrico pep 98.1 6.5E-05 1.4E-09 69.1 13.6 101 390-492 3-103 (120)
91 cd00189 TPR Tetratricopeptide 98.1 6.8E-05 1.5E-09 59.1 11.8 65 429-496 2-66 (100)
92 COG1729 Uncharacterized protei 98.1 5.2E-05 1.1E-09 78.3 13.4 107 390-498 143-249 (262)
93 COG4785 NlpI Lipoprotein NlpI, 98.1 3.5E-05 7.6E-10 77.6 11.7 131 351-496 35-165 (297)
94 cd05804 StaR_like StaR_like; a 98.0 0.00013 2.7E-09 76.2 16.1 103 391-496 46-180 (355)
95 KOG0553 TPR repeat-containing 98.0 2.3E-05 4.9E-10 81.8 10.2 101 426-542 80-181 (304)
96 cd05804 StaR_like StaR_like; a 98.0 5.7E-05 1.2E-09 78.8 13.0 103 388-495 114-217 (355)
97 COG3063 PilF Tfp pilus assembl 97.9 0.00012 2.6E-09 74.2 13.0 104 386-495 101-204 (250)
98 PF09976 TPR_21: Tetratricopep 97.9 0.00053 1.2E-08 63.8 16.5 103 385-489 8-110 (145)
99 KOG1840 Kinesin light chain [C 97.9 0.00021 4.6E-09 80.2 16.3 148 385-533 238-396 (508)
100 CHL00033 ycf3 photosystem I as 97.9 4.8E-05 1.1E-09 72.2 9.7 100 394-496 5-104 (168)
101 KOG2076 RNA polymerase III tra 97.9 0.00017 3.6E-09 83.9 15.3 102 387-496 138-273 (895)
102 TIGR02795 tol_pal_ybgF tol-pal 97.9 0.00021 4.5E-09 62.0 12.3 71 427-497 2-72 (119)
103 PF14559 TPR_19: Tetratricopep 97.9 2.7E-05 5.8E-10 62.4 5.8 57 437-496 1-57 (68)
104 COG4783 Putative Zn-dependent 97.9 0.00023 5.1E-09 78.3 14.6 100 388-495 340-439 (484)
105 PF13429 TPR_15: Tetratricopep 97.9 0.00026 5.6E-09 72.3 14.1 133 388-534 110-244 (280)
106 KOG4162 Predicted calmodulin-b 97.9 0.00012 2.5E-09 84.0 12.4 103 386-496 682-786 (799)
107 PF06552 TOM20_plant: Plant sp 97.8 0.00026 5.6E-09 69.5 12.9 85 404-496 7-112 (186)
108 PRK02603 photosystem I assembl 97.8 0.00042 9.1E-09 66.2 14.3 82 415-496 23-104 (172)
109 KOG1174 Anaphase-promoting com 97.8 0.00015 3.3E-09 78.5 12.2 103 386-496 332-470 (564)
110 KOG1128 Uncharacterized conser 97.8 9.3E-05 2E-09 84.5 10.8 100 387-494 484-583 (777)
111 PRK14574 hmsH outer membrane p 97.8 0.00034 7.4E-09 82.9 14.9 128 393-535 73-200 (822)
112 PRK15363 pathogenicity island 97.8 0.00021 4.5E-09 68.8 10.7 84 386-475 67-150 (157)
113 KOG2003 TPR repeat-containing 97.8 5.7E-05 1.2E-09 82.3 7.6 103 387-497 489-591 (840)
114 KOG0543 FKBP-type peptidyl-pro 97.8 0.00043 9.3E-09 74.9 14.0 99 390-496 259-358 (397)
115 KOG1840 Kinesin light chain [C 97.7 0.00028 6.1E-09 79.3 12.5 112 385-496 280-399 (508)
116 COG4783 Putative Zn-dependent 97.7 0.00073 1.6E-08 74.5 14.7 103 387-497 305-407 (484)
117 PF12968 DUF3856: Domain of Un 97.7 0.00092 2E-08 61.8 12.9 110 387-496 8-132 (144)
118 COG4105 ComL DNA uptake lipopr 97.7 0.0027 5.9E-08 65.4 17.4 110 387-498 33-150 (254)
119 PF03704 BTAD: Bacterial trans 97.6 0.0021 4.5E-08 59.4 15.3 107 387-496 5-128 (146)
120 PRK10153 DNA-binding transcrip 97.6 0.00059 1.3E-08 77.0 13.1 107 387-497 338-486 (517)
121 KOG2076 RNA polymerase III tra 97.6 0.0025 5.3E-08 74.5 18.1 101 390-495 209-311 (895)
122 PF09295 ChAPs: ChAPs (Chs5p-A 97.6 0.00052 1.1E-08 75.0 12.1 92 393-496 205-296 (395)
123 TIGR00540 hemY_coli hemY prote 97.6 0.0031 6.8E-08 68.6 18.2 104 385-496 81-185 (409)
124 PRK14574 hmsH outer membrane p 97.6 0.0012 2.6E-08 78.4 15.5 100 388-496 102-201 (822)
125 KOG4151 Myosin assembly protei 97.6 0.00017 3.6E-09 83.1 7.9 114 379-496 44-159 (748)
126 PF00515 TPR_1: Tetratricopept 97.6 0.00013 2.9E-09 51.2 4.6 33 427-459 1-33 (34)
127 KOG2003 TPR repeat-containing 97.6 0.00016 3.4E-09 79.0 7.2 100 392-495 241-340 (840)
128 KOG2002 TPR-containing nuclear 97.5 0.00044 9.6E-09 81.0 11.1 51 206-265 164-216 (1018)
129 PF12569 NARP1: NMDA receptor- 97.5 0.0024 5.2E-08 72.2 16.6 97 429-541 196-292 (517)
130 COG2956 Predicted N-acetylgluc 97.4 0.003 6.4E-08 67.1 14.1 103 390-495 143-245 (389)
131 PRK10747 putative protoheme IX 97.4 0.0082 1.8E-07 65.2 18.0 88 399-493 129-216 (398)
132 KOG4234 TPR repeat-containing 97.4 0.0011 2.3E-08 66.5 10.0 69 386-459 132-200 (271)
133 COG5010 TadD Flp pilus assembl 97.3 0.0013 2.9E-08 67.5 10.6 99 392-498 70-168 (257)
134 PF12895 Apc3: Anaphase-promot 97.3 0.00041 8.8E-09 58.5 5.8 60 388-453 25-84 (84)
135 KOG1173 Anaphase-promoting com 97.3 0.0014 3.1E-08 73.3 11.0 103 393-500 385-491 (611)
136 PRK10803 tol-pal system protei 97.3 0.0042 9.2E-08 64.4 13.8 71 427-497 142-213 (263)
137 PF14938 SNAP: Soluble NSF att 97.3 0.0019 4.1E-08 66.9 11.2 113 385-498 32-149 (282)
138 KOG2002 TPR-containing nuclear 97.3 0.0092 2E-07 70.4 17.6 103 387-496 306-412 (1018)
139 PF14938 SNAP: Soluble NSF att 97.3 0.0013 2.9E-08 68.1 9.5 111 386-496 112-228 (282)
140 PRK10747 putative protoheme IX 97.2 0.0036 7.7E-08 68.0 12.5 88 400-496 306-393 (398)
141 TIGR00540 hemY_coli hemY prote 97.2 0.0056 1.2E-07 66.6 14.0 97 391-494 121-217 (409)
142 PF13431 TPR_17: Tetratricopep 97.2 0.00041 9E-09 49.8 3.5 32 450-484 2-33 (34)
143 PRK14720 transcript cleavage f 97.2 0.004 8.6E-08 74.2 13.6 106 385-496 62-181 (906)
144 KOG1125 TPR repeat-containing 97.2 0.0027 5.8E-08 71.3 11.5 97 392-496 289-385 (579)
145 PRK11906 transcriptional regul 97.2 0.0023 4.9E-08 70.8 10.7 88 401-496 317-404 (458)
146 PF07719 TPR_2: Tetratricopept 97.1 0.0011 2.4E-08 46.0 5.1 32 428-459 2-33 (34)
147 PF13431 TPR_17: Tetratricopep 97.1 0.00051 1.1E-08 49.4 3.3 34 410-448 1-34 (34)
148 PF13525 YfiO: Outer membrane 97.1 0.017 3.7E-07 57.1 15.2 107 388-496 42-173 (203)
149 PF15015 NYD-SP12_N: Spermatog 97.0 0.0045 9.8E-08 67.5 11.1 107 386-495 174-293 (569)
150 KOG4555 TPR repeat-containing 97.0 0.0046 9.9E-08 58.4 9.6 95 433-532 49-143 (175)
151 COG2956 Predicted N-acetylgluc 97.0 0.012 2.5E-07 62.7 13.7 106 384-496 176-281 (389)
152 KOG1130 Predicted G-alpha GTPa 97.0 0.0011 2.4E-08 72.0 6.0 116 381-496 188-307 (639)
153 PF13428 TPR_14: Tetratricopep 97.0 0.0016 3.4E-08 48.9 5.2 42 428-472 2-43 (44)
154 PF12688 TPR_5: Tetratrico pep 97.0 0.0055 1.2E-07 56.5 9.8 69 428-496 2-70 (120)
155 PRK10866 outer membrane biogen 97.0 0.028 6E-07 57.6 15.9 108 388-497 69-208 (243)
156 PRK10941 hypothetical protein; 97.0 0.0056 1.2E-07 63.8 11.0 79 417-498 171-249 (269)
157 PRK11906 transcriptional regul 97.0 0.0038 8.2E-08 69.1 10.0 101 390-498 257-372 (458)
158 KOG4648 Uncharacterized conser 96.8 0.0029 6.2E-08 67.6 7.4 62 430-494 100-161 (536)
159 PRK14720 transcript cleavage f 96.8 0.013 2.8E-07 70.0 13.5 105 387-498 30-150 (906)
160 PF00515 TPR_1: Tetratricopept 96.8 0.0026 5.7E-08 44.5 4.8 33 464-496 1-33 (34)
161 KOG1129 TPR repeat-containing 96.8 0.0032 7E-08 66.9 7.1 98 394-496 330-427 (478)
162 KOG3060 Uncharacterized conser 96.7 0.019 4E-07 59.5 12.3 88 401-496 133-223 (289)
163 KOG3060 Uncharacterized conser 96.7 0.03 6.6E-07 57.9 13.8 76 388-471 154-232 (289)
164 COG0457 NrfG FOG: TPR repeat [ 96.7 0.042 9.1E-07 48.8 13.1 100 388-495 167-267 (291)
165 KOG1128 Uncharacterized conser 96.7 0.0071 1.5E-07 69.6 9.8 105 387-499 518-622 (777)
166 KOG1127 TPR repeat-containing 96.7 0.0046 1E-07 73.0 8.2 99 390-496 564-662 (1238)
167 KOG1174 Anaphase-promoting com 96.7 0.017 3.6E-07 63.2 11.8 109 387-503 299-407 (564)
168 PF07719 TPR_2: Tetratricopept 96.6 0.0054 1.2E-07 42.5 5.2 34 388-421 1-34 (34)
169 COG0457 NrfG FOG: TPR repeat [ 96.6 0.046 9.9E-07 48.5 12.6 94 397-494 139-232 (291)
170 COG1729 Uncharacterized protei 96.6 0.019 4.2E-07 59.6 11.2 69 430-498 144-212 (262)
171 PF10300 DUF3808: Protein of u 96.6 0.034 7.3E-07 62.2 13.9 127 387-523 266-401 (468)
172 KOG1130 Predicted G-alpha GTPa 96.6 0.0067 1.4E-07 66.2 7.9 107 387-494 16-125 (639)
173 PF04733 Coatomer_E: Coatomer 96.5 0.013 2.8E-07 61.6 9.8 83 402-492 181-263 (290)
174 KOG1156 N-terminal acetyltrans 96.5 0.035 7.6E-07 63.4 13.3 98 390-495 77-174 (700)
175 PF12569 NARP1: NMDA receptor- 96.4 0.029 6.2E-07 63.6 12.3 98 389-494 195-292 (517)
176 KOG1129 TPR repeat-containing 96.3 0.036 7.9E-07 59.2 11.6 99 392-499 227-325 (478)
177 KOG4162 Predicted calmodulin-b 96.3 0.042 9E-07 63.8 13.0 124 391-535 653-778 (799)
178 COG4700 Uncharacterized protei 96.3 0.046 9.9E-07 54.6 11.4 103 388-496 89-192 (251)
179 PF09295 ChAPs: ChAPs (Chs5p-A 96.2 0.059 1.3E-06 59.2 13.1 111 401-535 182-292 (395)
180 PRK10153 DNA-binding transcrip 96.2 0.021 4.6E-07 64.6 10.0 68 389-465 421-488 (517)
181 KOG1127 TPR repeat-containing 96.2 0.064 1.4E-06 63.9 13.5 99 392-498 6-108 (1238)
182 KOG4814 Uncharacterized conser 96.2 0.037 7.9E-07 63.2 11.1 105 389-496 355-460 (872)
183 PF13181 TPR_8: Tetratricopept 96.2 0.0097 2.1E-07 41.4 4.4 32 428-459 2-33 (34)
184 COG4235 Cytochrome c biogenesi 96.1 0.088 1.9E-06 55.4 13.2 112 402-534 136-250 (287)
185 PF06552 TOM20_plant: Plant sp 96.0 0.043 9.4E-07 54.2 9.7 53 402-459 49-112 (186)
186 KOG1308 Hsp70-interacting prot 96.0 0.0034 7.3E-08 67.0 2.1 85 440-533 127-211 (377)
187 KOG1156 N-terminal acetyltrans 95.9 0.11 2.3E-06 59.7 13.5 104 385-496 38-141 (700)
188 PF13512 TPR_18: Tetratricopep 95.9 0.069 1.5E-06 50.8 10.2 70 427-496 10-79 (142)
189 KOG0495 HAT repeat protein [RN 95.8 0.17 3.7E-06 58.2 14.6 90 399-497 629-718 (913)
190 KOG2376 Signal recognition par 95.8 0.053 1.1E-06 61.5 10.5 97 388-496 46-142 (652)
191 PRK15331 chaperone protein Sic 95.8 0.037 8E-07 53.8 8.2 79 388-476 71-149 (165)
192 PRK04841 transcriptional regul 95.8 0.24 5.3E-06 58.7 16.7 107 390-496 454-563 (903)
193 KOG4340 Uncharacterized conser 95.8 0.027 5.9E-07 59.5 7.6 95 387-486 143-263 (459)
194 PF13428 TPR_14: Tetratricopep 95.5 0.04 8.6E-07 41.2 5.8 41 390-435 3-43 (44)
195 KOG3785 Uncharacterized conser 95.5 0.049 1.1E-06 58.7 8.3 85 398-489 32-116 (557)
196 smart00028 TPR Tetratricopepti 95.5 0.021 4.5E-07 36.6 3.6 32 428-459 2-33 (34)
197 PF10602 RPN7: 26S proteasome 95.4 0.57 1.2E-05 45.8 15.1 107 386-494 34-143 (177)
198 KOG3785 Uncharacterized conser 95.4 0.07 1.5E-06 57.6 9.2 96 393-496 62-217 (557)
199 KOG3824 Huntingtin interacting 95.4 0.15 3.2E-06 54.3 11.4 104 385-496 113-220 (472)
200 KOG0551 Hsp90 co-chaperone CNS 95.3 0.13 2.7E-06 55.3 10.7 85 413-497 66-152 (390)
201 KOG1941 Acetylcholine receptor 95.2 0.3 6.4E-06 53.1 12.9 77 424-500 80-158 (518)
202 KOG2376 Signal recognition par 95.1 0.36 7.9E-06 55.0 14.0 96 392-495 83-206 (652)
203 PF13181 TPR_8: Tetratricopept 95.0 0.056 1.2E-06 37.5 4.8 31 465-495 2-32 (34)
204 PF13174 TPR_6: Tetratricopept 95.0 0.05 1.1E-06 37.1 4.4 31 466-496 2-32 (33)
205 KOG4642 Chaperone-dependent E3 94.9 0.024 5.2E-07 58.3 3.7 63 431-496 14-76 (284)
206 KOG0495 HAT repeat protein [RN 94.9 0.35 7.6E-06 55.8 13.0 102 389-498 686-787 (913)
207 COG4785 NlpI Lipoprotein NlpI, 94.8 0.069 1.5E-06 54.5 6.7 73 423-498 61-133 (297)
208 PF14853 Fis1_TPR_C: Fis1 C-te 94.8 0.13 2.8E-06 41.0 6.8 36 429-467 3-38 (53)
209 PRK04841 transcriptional regul 94.8 0.35 7.6E-06 57.4 13.6 104 391-494 494-603 (903)
210 KOG0545 Aryl-hydrocarbon recep 94.7 0.59 1.3E-05 48.6 13.2 74 388-469 230-303 (329)
211 PF13176 TPR_7: Tetratricopept 94.7 0.057 1.2E-06 38.9 4.3 28 429-456 1-28 (36)
212 cd00020 ARM Armadillo/beta-cat 94.6 0.1 2.3E-06 45.1 6.6 99 47-157 2-100 (120)
213 COG4105 ComL DNA uptake lipopr 94.5 0.82 1.8E-05 47.5 13.8 72 427-498 34-105 (254)
214 COG2976 Uncharacterized protei 94.4 0.65 1.4E-05 46.6 12.3 102 388-495 89-190 (207)
215 KOG2796 Uncharacterized conser 94.4 0.21 4.6E-06 52.2 9.2 68 426-496 251-318 (366)
216 PF04781 DUF627: Protein of un 94.4 0.29 6.4E-06 44.8 9.1 95 394-493 2-107 (111)
217 KOG4507 Uncharacterized conser 94.4 0.18 3.8E-06 57.5 9.1 307 154-496 323-708 (886)
218 PF03704 BTAD: Bacterial trans 94.4 0.41 9E-06 44.1 10.4 63 387-454 61-123 (146)
219 PF00514 Arm: Armadillo/beta-c 94.2 0.056 1.2E-06 39.9 3.4 39 96-135 3-41 (41)
220 KOG0544 FKBP-type peptidyl-pro 94.2 0.0029 6.4E-08 56.0 -4.0 39 327-365 66-106 (108)
221 PF04733 Coatomer_E: Coatomer 94.1 0.19 4.2E-06 52.8 8.5 93 394-496 137-233 (290)
222 KOG0376 Serine-threonine phosp 94.0 0.067 1.5E-06 59.4 5.0 79 388-474 38-116 (476)
223 COG3118 Thioredoxin domain-con 93.9 1.6 3.4E-05 46.4 14.5 99 390-496 136-268 (304)
224 PF10579 Rapsyn_N: Rapsyn N-te 93.9 0.47 1E-05 41.0 8.8 68 387-456 5-72 (80)
225 PF13174 TPR_6: Tetratricopept 93.9 0.11 2.3E-06 35.5 4.2 31 429-459 2-32 (33)
226 KOG4340 Uncharacterized conser 93.7 0.3 6.6E-06 51.9 8.8 83 398-488 20-102 (459)
227 COG3071 HemY Uncharacterized e 93.5 0.65 1.4E-05 50.8 11.3 88 400-496 306-393 (400)
228 KOG2796 Uncharacterized conser 93.3 0.19 4.1E-06 52.6 6.5 81 387-472 251-331 (366)
229 PF13176 TPR_7: Tetratricopept 93.2 0.17 3.7E-06 36.3 4.4 28 391-418 2-29 (36)
230 smart00028 TPR Tetratricopepti 93.2 0.14 3E-06 32.5 3.6 31 465-495 2-32 (34)
231 PLN03081 pentatricopeptide (PP 93.1 0.48 1E-05 55.1 10.3 95 391-495 465-559 (697)
232 COG2912 Uncharacterized conser 93.1 0.73 1.6E-05 48.3 10.5 77 419-498 173-249 (269)
233 PLN03218 maturation of RBCL 1; 93.1 2 4.4E-05 53.0 15.9 88 396-491 622-711 (1060)
234 KOG1941 Acetylcholine receptor 93.0 0.27 5.8E-06 53.4 7.2 109 390-498 124-240 (518)
235 PLN03218 maturation of RBCL 1; 93.0 2.2 4.8E-05 52.7 16.0 98 389-493 650-748 (1060)
236 KOG2471 TPR repeat-containing 92.8 0.53 1.2E-05 52.8 9.3 110 387-496 239-367 (696)
237 COG3071 HemY Uncharacterized e 92.7 3.7 8E-05 45.1 15.5 106 384-496 80-185 (400)
238 PRK10941 hypothetical protein; 92.4 2 4.4E-05 45.0 12.8 79 388-474 181-259 (269)
239 COG4700 Uncharacterized protei 92.4 3.6 7.8E-05 41.5 13.6 125 399-539 67-195 (251)
240 KOG3081 Vesicle coat complex C 92.2 2.3 5E-05 44.7 12.6 87 401-495 186-272 (299)
241 PF12862 Apc5: Anaphase-promot 91.9 0.69 1.5E-05 40.3 7.4 60 398-457 8-71 (94)
242 PF13374 TPR_10: Tetratricopep 91.9 0.35 7.6E-06 34.5 4.6 30 427-456 2-31 (42)
243 PF08631 SPO22: Meiosis protei 91.5 5.2 0.00011 41.5 14.6 114 375-495 25-152 (278)
244 KOG1586 Protein required for f 91.4 3.5 7.6E-05 42.8 12.7 108 388-496 74-186 (288)
245 COG4976 Predicted methyltransf 91.1 0.35 7.7E-06 49.7 5.2 59 397-460 4-62 (287)
246 KOG1585 Protein required for f 90.6 10 0.00022 39.7 15.2 107 388-497 31-143 (308)
247 smart00185 ARM Armadillo/beta- 90.6 0.41 8.8E-06 34.2 3.9 38 97-135 4-41 (41)
248 PLN03081 pentatricopeptide (PP 90.6 1.4 3.1E-05 51.3 10.4 93 389-488 392-486 (697)
249 PLN03077 Protein ECB2; Provisi 90.3 2.5 5.4E-05 50.5 12.3 96 390-495 627-722 (857)
250 KOG2053 Mitochondrial inherita 90.1 1.8 3.9E-05 51.6 10.5 89 387-485 42-131 (932)
251 PF14853 Fis1_TPR_C: Fis1 C-te 90.1 0.88 1.9E-05 36.2 5.7 32 465-496 2-33 (53)
252 KOG2610 Uncharacterized conser 90.1 2.9 6.3E-05 45.4 11.1 97 389-488 104-233 (491)
253 KOG0686 COP9 signalosome, subu 89.6 2.7 5.9E-05 46.4 10.7 102 388-491 150-256 (466)
254 PF09986 DUF2225: Uncharacteri 89.5 5.9 0.00013 40.1 12.6 99 397-495 86-196 (214)
255 PF02259 FAT: FAT domain; Int 89.2 5.2 0.00011 41.6 12.4 69 424-495 249-340 (352)
256 PF14561 TPR_20: Tetratricopep 89.0 4.2 9.1E-05 35.6 9.7 77 407-489 7-83 (90)
257 PLN03077 Protein ECB2; Provisi 88.8 2.7 5.9E-05 50.2 11.2 96 388-490 554-651 (857)
258 PF10300 DUF3808: Protein of u 88.5 2.4 5.3E-05 47.6 9.9 89 400-493 245-334 (468)
259 KOG1915 Cell cycle control pro 88.5 7.3 0.00016 44.1 13.1 126 388-533 404-529 (677)
260 KOG1070 rRNA processing protei 87.2 25 0.00054 44.4 17.5 98 394-497 1536-1633(1710)
261 KOG1586 Protein required for f 86.6 14 0.00031 38.5 13.0 109 388-497 34-147 (288)
262 PF12862 Apc5: Anaphase-promot 86.4 3.2 6.9E-05 36.1 7.4 64 436-499 7-76 (94)
263 COG3629 DnrI DNA-binding trans 86.2 7.6 0.00016 41.1 11.3 69 424-495 150-218 (280)
264 PF13374 TPR_10: Tetratricopep 85.8 1.9 4.1E-05 30.6 4.8 31 388-418 2-32 (42)
265 KOG1915 Cell cycle control pro 85.4 14 0.00031 41.8 13.2 99 390-496 75-173 (677)
266 PF04184 ST7: ST7 protein; In 84.7 8.2 0.00018 43.8 11.2 88 402-490 214-321 (539)
267 KOG2471 TPR repeat-containing 84.3 1.4 3.1E-05 49.6 5.1 88 387-477 282-382 (696)
268 KOG3824 Huntingtin interacting 83.7 4.2 9.1E-05 43.7 8.0 72 426-500 115-186 (472)
269 PF05843 Suf: Suppressor of fo 83.2 7.4 0.00016 40.5 9.7 84 404-495 17-101 (280)
270 KOG2053 Mitochondrial inherita 83.1 20 0.00044 43.2 13.9 91 398-496 19-109 (932)
271 PF14561 TPR_20: Tetratricopep 83.1 8.8 0.00019 33.6 8.6 50 445-497 6-55 (90)
272 PF10373 EST1_DNA_bind: Est1 D 82.8 4.5 9.7E-05 40.9 7.7 62 407-476 1-62 (278)
273 PF04184 ST7: ST7 protein; In 82.3 12 0.00026 42.6 11.2 62 389-453 260-321 (539)
274 COG0545 FkpA FKBP-type peptidy 81.9 0.14 3E-06 51.4 -3.5 40 327-366 163-204 (205)
275 PF05843 Suf: Suppressor of fo 81.5 22 0.00049 37.0 12.5 98 391-496 38-139 (280)
276 COG4976 Predicted methyltransf 81.1 2 4.4E-05 44.3 4.4 59 436-497 4-62 (287)
277 PRK13184 pknD serine/threonine 80.9 16 0.00036 44.6 12.6 97 394-496 481-584 (932)
278 cd00020 ARM Armadillo/beta-cat 80.8 2.2 4.7E-05 36.8 4.0 94 30-135 26-120 (120)
279 KOG3364 Membrane protein invol 79.9 29 0.00064 33.3 11.3 86 427-524 32-121 (149)
280 PF10516 SHNi-TPR: SHNi-TPR; 79.7 2.7 5.8E-05 31.3 3.5 30 466-495 3-32 (38)
281 PF10516 SHNi-TPR: SHNi-TPR; 79.2 3.6 7.8E-05 30.6 4.1 29 428-456 2-30 (38)
282 KOG3364 Membrane protein invol 79.1 7.6 0.00017 37.2 7.2 58 403-467 50-108 (149)
283 KOG1585 Protein required for f 79.1 13 0.00027 39.1 9.3 93 398-490 81-176 (308)
284 PF08631 SPO22: Meiosis protei 78.4 15 0.00032 38.2 10.0 96 398-494 3-113 (278)
285 KOG3081 Vesicle coat complex C 78.3 15 0.00033 38.8 9.7 89 399-497 148-240 (299)
286 KOG2396 HAT (Half-A-TPR) repea 78.0 60 0.0013 37.2 14.8 84 405-496 88-172 (568)
287 cd02682 MIT_AAA_Arch MIT: doma 77.9 14 0.00031 31.6 7.9 32 386-417 4-35 (75)
288 PF10602 RPN7: 26S proteasome 77.9 26 0.00056 34.3 10.9 74 423-496 32-105 (177)
289 KOG4507 Uncharacterized conser 77.4 7.6 0.00016 44.9 7.8 91 400-496 225-315 (886)
290 COG3947 Response regulator con 75.6 13 0.00027 39.9 8.4 65 427-494 279-343 (361)
291 PF02259 FAT: FAT domain; Int 75.3 48 0.001 34.4 12.8 110 386-496 144-290 (352)
292 COG2912 Uncharacterized conser 75.0 12 0.00026 39.4 8.1 74 391-472 184-257 (269)
293 PF10255 Paf67: RNA polymerase 73.9 6.3 0.00014 43.7 6.0 66 430-496 125-196 (404)
294 PF09986 DUF2225: Uncharacteri 73.6 19 0.00042 36.4 9.0 86 385-472 122-208 (214)
295 PF04212 MIT: MIT (microtubule 72.8 9.1 0.0002 31.3 5.4 32 386-417 3-34 (69)
296 TIGR03516 ppisom_GldI peptidyl 72.8 0.29 6.2E-06 48.1 -4.2 41 326-366 133-175 (177)
297 KOG1070 rRNA processing protei 71.2 59 0.0013 41.4 13.5 86 402-496 1511-1596(1710)
298 COG3898 Uncharacterized membra 70.1 36 0.00077 38.0 10.4 96 397-496 197-295 (531)
299 PF09613 HrpB1_HrpK: Bacterial 70.0 78 0.0017 31.0 11.8 99 387-494 9-107 (160)
300 COG3914 Spy Predicted O-linked 69.5 25 0.00053 40.8 9.4 95 394-496 73-174 (620)
301 PF11817 Foie-gras_1: Foie gra 69.4 21 0.00046 36.5 8.4 66 389-454 179-245 (247)
302 PF07079 DUF1347: Protein of u 69.0 1.1E+02 0.0024 34.9 14.0 98 386-487 377-518 (549)
303 cd02680 MIT_calpain7_2 MIT: do 68.9 7.4 0.00016 33.3 4.0 33 386-418 4-36 (75)
304 KOG3617 WD40 and TPR repeat-co 67.0 55 0.0012 39.7 11.6 101 388-491 858-994 (1416)
305 PF13646 HEAT_2: HEAT repeats; 66.7 5.5 0.00012 33.0 2.9 61 71-144 8-68 (88)
306 PF10579 Rapsyn_N: Rapsyn N-te 66.4 48 0.001 28.9 8.5 68 428-495 7-74 (80)
307 PF05804 KAP: Kinesin-associat 66.1 15 0.00032 43.7 7.1 229 28-317 307-540 (708)
308 KOG3540 Beta amyloid precursor 64.8 2.2E+02 0.0048 32.6 15.3 75 402-484 326-400 (615)
309 cd02683 MIT_1 MIT: domain cont 64.1 14 0.0003 31.5 4.8 31 387-417 5-35 (77)
310 PF00254 FKBP_C: FKBP-type pep 63.6 0.31 6.7E-06 41.8 -5.5 35 326-360 53-90 (94)
311 cd02680 MIT_calpain7_2 MIT: do 63.5 46 0.00099 28.5 7.8 28 469-496 11-38 (75)
312 cd02681 MIT_calpain7_1 MIT: do 63.4 16 0.00035 31.3 5.1 33 386-418 4-36 (76)
313 COG2976 Uncharacterized protei 63.3 1.3E+02 0.0028 30.6 12.1 61 428-488 90-150 (207)
314 PF09670 Cas_Cas02710: CRISPR- 63.3 1.1E+02 0.0023 33.7 12.7 66 387-455 130-197 (379)
315 PF12968 DUF3856: Domain of Un 63.0 94 0.002 29.5 10.3 69 388-456 55-129 (144)
316 cd02678 MIT_VPS4 MIT: domain c 62.9 17 0.00036 30.5 5.1 33 385-417 3-35 (75)
317 KOG3617 WD40 and TPR repeat-co 62.8 31 0.00068 41.6 8.7 87 406-495 837-943 (1416)
318 KOG0552 FKBP-type peptidyl-pro 62.7 0.75 1.6E-05 47.0 -3.7 39 327-365 185-224 (226)
319 PF14668 RICTOR_V: Rapamycin-i 62.4 7.2 0.00016 33.1 2.8 39 121-160 2-40 (73)
320 TIGR03504 FimV_Cterm FimV C-te 62.1 15 0.00033 28.2 4.2 25 468-492 3-27 (44)
321 PLN03200 cellulose synthase-in 61.8 11 0.00023 49.6 5.3 69 75-144 458-526 (2102)
322 PF11817 Foie-gras_1: Foie gra 61.8 47 0.001 34.0 9.2 66 425-490 176-244 (247)
323 KOG2114 Vacuolar assembly/sort 61.7 79 0.0017 38.3 11.7 32 387-418 367-398 (933)
324 PF06957 COPI_C: Coatomer (COP 61.1 28 0.00061 39.0 7.8 104 390-496 206-332 (422)
325 PF07721 TPR_4: Tetratricopept 60.9 10 0.00022 25.3 2.7 21 430-450 4-24 (26)
326 smart00745 MIT Microtubule Int 60.6 57 0.0012 27.1 7.9 32 386-417 6-37 (77)
327 cd02684 MIT_2 MIT: domain cont 60.4 15 0.00033 31.1 4.4 33 385-417 3-35 (75)
328 PF14863 Alkyl_sulf_dimr: Alky 59.9 35 0.00075 32.6 7.2 54 427-483 70-123 (141)
329 KOG1550 Extracellular protein 59.6 83 0.0018 36.2 11.5 92 391-494 291-394 (552)
330 PF07720 TPR_3: Tetratricopept 59.4 29 0.00063 25.4 5.1 31 390-420 3-35 (36)
331 PF02985 HEAT: HEAT repeat; I 58.8 6.5 0.00014 27.3 1.6 30 106-136 1-30 (31)
332 PF08424 NRDE-2: NRDE-2, neces 58.1 97 0.0021 33.0 11.1 85 404-496 47-134 (321)
333 COG3629 DnrI DNA-binding trans 58.0 59 0.0013 34.5 9.2 64 387-455 152-215 (280)
334 cd02656 MIT MIT: domain contai 57.6 24 0.00052 29.3 5.1 32 386-417 4-35 (75)
335 KOG2047 mRNA splicing factor [ 57.3 1.1E+02 0.0025 36.1 11.8 104 384-489 507-611 (835)
336 PF11207 DUF2989: Protein of u 57.3 42 0.0009 34.1 7.6 75 405-484 123-198 (203)
337 cd02681 MIT_calpain7_1 MIT: do 56.9 51 0.0011 28.2 7.0 31 466-496 8-38 (76)
338 PF10508 Proteasom_PSMB: Prote 56.6 17 0.00036 41.3 5.3 209 48-309 239-472 (503)
339 KOG2300 Uncharacterized conser 56.6 1E+02 0.0022 35.4 11.0 102 387-494 366-475 (629)
340 PRK11570 peptidyl-prolyl cis-t 55.7 0.94 2E-05 45.6 -4.3 41 325-365 162-204 (206)
341 PF07721 TPR_4: Tetratricopept 54.6 14 0.0003 24.6 2.6 24 465-488 2-25 (26)
342 PF14863 Alkyl_sulf_dimr: Alky 54.1 39 0.00085 32.2 6.5 49 388-441 70-118 (141)
343 KOG0546 HSP90 co-chaperone CPR 54.1 11 0.00023 41.2 3.0 62 393-459 280-341 (372)
344 PLN03200 cellulose synthase-in 54.1 23 0.0005 46.7 6.4 121 4-137 6-130 (2102)
345 KOG1839 Uncharacterized protei 53.1 1.7E+02 0.0036 37.1 13.0 141 385-533 970-1121(1236)
346 TIGR02710 CRISPR-associated pr 53.0 2.3E+02 0.0049 31.5 13.0 62 390-451 132-195 (380)
347 cd02682 MIT_AAA_Arch MIT: doma 53.0 83 0.0018 27.0 7.6 29 427-455 6-34 (75)
348 PF10373 EST1_DNA_bind: Est1 D 52.8 29 0.00062 35.0 5.8 45 446-493 1-45 (278)
349 PF07219 HemY_N: HemY protein 52.1 83 0.0018 28.1 8.0 55 383-442 54-108 (108)
350 KOG0549 FKBP-type peptidyl-pro 52.1 1.1 2.3E-05 44.5 -4.4 40 328-367 135-176 (188)
351 TIGR03504 FimV_Cterm FimV C-te 51.9 58 0.0013 25.0 5.9 25 431-455 3-27 (44)
352 PF04910 Tcf25: Transcriptiona 51.5 2.6E+02 0.0056 30.6 13.2 78 415-497 33-136 (360)
353 PRK15180 Vi polysaccharide bio 51.5 1.2E+02 0.0027 34.8 10.6 100 387-494 288-387 (831)
354 PHA02537 M terminase endonucle 51.3 1.6E+02 0.0034 30.5 10.7 96 398-496 93-210 (230)
355 PF07079 DUF1347: Protein of u 50.8 1.2E+02 0.0026 34.6 10.3 60 387-452 461-520 (549)
356 PF08424 NRDE-2: NRDE-2, neces 50.3 1.7E+02 0.0036 31.3 11.3 80 409-496 6-97 (321)
357 KOG1550 Extracellular protein 50.3 63 0.0014 37.2 8.7 89 400-493 261-357 (552)
358 COG0790 FOG: TPR repeat, SEL1 49.7 2.6E+02 0.0055 28.6 12.3 98 388-494 109-221 (292)
359 cd02683 MIT_1 MIT: domain cont 49.5 80 0.0017 26.9 7.1 32 465-496 7-38 (77)
360 KOG0530 Protein farnesyltransf 48.7 1E+02 0.0023 32.8 9.0 83 408-498 98-181 (318)
361 COG3914 Spy Predicted O-linked 48.1 1.3E+02 0.0027 35.2 10.3 92 399-496 41-134 (620)
362 cd02677 MIT_SNX15 MIT: domain 47.6 35 0.00077 29.0 4.6 32 386-417 4-35 (75)
363 PF04781 DUF627: Protein of un 47.6 2.3E+02 0.005 26.2 10.6 64 433-496 2-76 (111)
364 COG5091 SGT1 Suppressor of G2 45.1 52 0.0011 35.0 6.2 119 397-523 4-131 (368)
365 COG4649 Uncharacterized protei 43.3 2.6E+02 0.0057 28.3 10.4 103 388-493 94-196 (221)
366 KOG4814 Uncharacterized conser 43.2 1.3E+02 0.0028 35.8 9.4 71 426-496 353-426 (872)
367 PF02064 MAS20: MAS20 protein 43.1 78 0.0017 29.6 6.5 41 381-421 56-96 (121)
368 PF13513 HEAT_EZ: HEAT-like re 42.8 28 0.0006 26.7 3.0 49 83-133 7-55 (55)
369 PF10345 Cohesin_load: Cohesin 42.4 4.2E+02 0.009 30.8 13.8 109 387-496 58-171 (608)
370 KOG3783 Uncharacterized conser 40.9 2.2E+02 0.0048 33.0 10.7 100 388-494 267-376 (546)
371 KOG2300 Uncharacterized conser 40.8 2.9E+02 0.0063 32.0 11.4 99 387-486 45-149 (629)
372 KOG3616 Selective LIM binding 40.5 96 0.0021 37.3 7.9 82 389-487 766-847 (1636)
373 smart00386 HAT HAT (Half-A-TPR 40.4 67 0.0015 20.9 4.3 27 402-433 1-27 (33)
374 PF10345 Cohesin_load: Cohesin 40.2 3.2E+02 0.0069 31.8 12.4 105 388-492 301-432 (608)
375 PF04212 MIT: MIT (microtubule 39.7 1.1E+02 0.0025 24.8 6.4 31 466-496 7-37 (69)
376 COG2909 MalT ATP-dependent tra 39.5 8.2E+02 0.018 30.2 15.5 109 387-495 414-528 (894)
377 TIGR02561 HrpB1_HrpK type III 39.4 3.8E+02 0.0081 26.2 10.7 84 391-482 13-96 (153)
378 KOG0530 Protein farnesyltransf 38.9 4.6E+02 0.0099 28.2 11.9 91 398-496 53-145 (318)
379 PF10952 DUF2753: Protein of u 38.3 1.4E+02 0.0031 28.4 7.3 97 390-495 3-114 (140)
380 KOG1310 WD40 repeat protein [G 38.2 59 0.0013 37.6 5.7 53 441-496 388-443 (758)
381 KOG2610 Uncharacterized conser 37.9 1.1E+02 0.0023 33.8 7.4 94 398-496 185-279 (491)
382 COG4455 ImpE Protein of avirul 37.2 2.3E+02 0.005 29.6 9.2 60 395-459 8-67 (273)
383 KOG0292 Vesicle coat complex C 37.0 4.4E+02 0.0095 32.7 12.6 109 385-496 988-1116(1202)
384 COG0790 FOG: TPR repeat, SEL1 36.7 2.1E+02 0.0045 29.2 9.3 31 463-493 108-142 (292)
385 COG2909 MalT ATP-dependent tra 36.7 9.1E+02 0.02 29.9 15.7 91 389-479 459-552 (894)
386 PF11207 DUF2989: Protein of u 36.3 62 0.0013 32.8 5.1 50 397-447 149-198 (203)
387 PRK10902 FKBP-type peptidyl-pr 35.8 2.9 6.2E-05 43.9 -4.6 43 325-367 206-249 (269)
388 KOG3616 Selective LIM binding 35.7 2.1E+02 0.0045 34.7 9.6 97 393-489 666-790 (1636)
389 COG5159 RPN6 26S proteasome re 35.6 3E+02 0.0065 29.9 10.0 108 392-499 7-160 (421)
390 KOG2047 mRNA splicing factor [ 35.1 2.4E+02 0.0053 33.6 10.0 95 399-493 358-454 (835)
391 PF07720 TPR_3: Tetratricopept 34.8 1.1E+02 0.0024 22.3 4.9 27 433-459 7-35 (36)
392 KOG2396 HAT (Half-A-TPR) repea 34.7 1.2E+02 0.0027 34.8 7.5 63 401-471 118-184 (568)
393 PF13281 DUF4071: Domain of un 34.7 1.9E+02 0.004 32.1 8.8 88 403-496 241-337 (374)
394 PF11846 DUF3366: Domain of un 34.5 1.2E+02 0.0027 29.4 6.9 49 444-496 128-176 (193)
395 COG3947 Response regulator con 34.1 1.2E+02 0.0026 32.9 6.8 59 390-453 281-339 (361)
396 KOG4563 Cell cycle-regulated h 32.7 1.1E+02 0.0023 33.9 6.4 36 385-420 38-73 (400)
397 COG3898 Uncharacterized membra 32.6 7.9E+02 0.017 27.9 15.2 93 391-493 123-217 (531)
398 COG3118 Thioredoxin domain-con 32.0 1.1E+02 0.0023 33.0 6.2 51 433-486 140-190 (304)
399 COG4941 Predicted RNA polymera 30.9 2.9E+02 0.0063 30.6 9.2 91 399-496 307-397 (415)
400 PRK13184 pknD serine/threonine 29.9 4.2E+02 0.0091 32.9 11.5 102 384-496 515-623 (932)
401 KOG0529 Protein geranylgeranyl 29.9 5.9E+02 0.013 28.7 11.6 83 403-493 90-178 (421)
402 KOG1464 COP9 signalosome, subu 29.5 1.2E+02 0.0026 32.6 5.9 55 439-493 39-94 (440)
403 KOG0529 Protein geranylgeranyl 29.4 8.5E+02 0.018 27.5 12.6 92 398-497 38-144 (421)
404 PF04910 Tcf25: Transcriptiona 29.0 7.9E+02 0.017 26.8 12.6 106 387-496 102-225 (360)
405 cd02678 MIT_VPS4 MIT: domain c 28.9 2.5E+02 0.0055 23.4 6.9 30 467-496 9-38 (75)
406 PF09613 HrpB1_HrpK: Bacterial 28.6 5.7E+02 0.012 25.1 10.6 69 424-495 7-75 (160)
407 PF10255 Paf67: RNA polymerase 28.5 57 0.0012 36.4 3.7 59 396-455 130-192 (404)
408 KOG1464 COP9 signalosome, subu 27.8 6.4E+02 0.014 27.3 10.9 105 393-498 150-265 (440)
409 PF00244 14-3-3: 14-3-3 protei 27.8 2.2E+02 0.0049 29.1 7.6 49 405-455 143-197 (236)
410 PF13646 HEAT_2: HEAT repeats; 27.7 60 0.0013 26.7 2.9 48 73-131 41-88 (88)
411 PRK09687 putative lyase; Provi 27.2 48 0.0011 34.8 2.7 62 71-138 62-123 (280)
412 TIGR00985 3a0801s04tom mitocho 27.2 1.6E+02 0.0035 28.4 6.0 39 383-421 85-124 (148)
413 PF09205 DUF1955: Domain of un 27.0 4E+02 0.0086 26.0 8.4 82 400-494 68-150 (161)
414 cd02656 MIT MIT: domain contai 26.8 3E+02 0.0064 22.7 6.9 30 467-496 9-38 (75)
415 COG4455 ImpE Protein of avirul 26.7 3.3E+02 0.0071 28.6 8.3 58 436-496 10-67 (273)
416 KOG0889 Histone acetyltransfer 25.9 6.2E+02 0.013 35.9 12.5 100 387-495 2773-2885(3550)
417 KOG1839 Uncharacterized protei 25.8 3.3E+02 0.0071 34.7 9.6 107 386-495 930-1046(1236)
418 COG5191 Uncharacterized conser 25.7 1.2E+02 0.0026 33.1 5.3 79 410-496 95-174 (435)
419 smart00745 MIT Microtubule Int 25.3 3.6E+02 0.0077 22.2 7.2 28 469-496 13-40 (77)
420 KOG0739 AAA+-type ATPase [Post 25.0 8.1E+02 0.017 27.0 11.1 43 443-496 7-49 (439)
421 KOG2041 WD40 repeat protein [G 24.1 2.9E+02 0.0064 33.3 8.3 80 390-489 798-877 (1189)
422 KOG1538 Uncharacterized conser 23.8 6.7E+02 0.015 30.2 10.9 43 442-490 788-830 (1081)
423 COG5624 TAF61 Transcription in 23.8 31 0.00068 38.2 0.6 21 71-91 447-468 (505)
424 PF07631 PSD4: Protein of unkn 23.3 70 0.0015 29.9 2.7 51 74-127 74-124 (128)
425 cd02684 MIT_2 MIT: domain cont 23.2 3.1E+02 0.0066 23.2 6.4 28 469-496 11-38 (75)
426 PF08429 PLU-1: PLU-1-like pro 23.0 7.9E+02 0.017 26.0 11.0 154 268-442 101-264 (335)
427 PF11846 DUF3366: Domain of un 22.6 3E+02 0.0064 26.7 7.1 49 405-459 128-176 (193)
428 KOG0985 Vesicle coat protein c 22.6 2.2E+02 0.0048 35.7 7.1 52 390-454 1196-1247(1666)
429 PF07219 HemY_N: HemY protein 22.5 3.9E+02 0.0084 23.8 7.3 51 426-479 58-108 (108)
430 PF03224 V-ATPase_H_N: V-ATPas 22.2 1.2E+02 0.0026 31.9 4.6 83 71-155 113-198 (312)
431 KOG4224 Armadillo repeat prote 21.9 1.2E+02 0.0026 33.7 4.5 107 30-138 145-283 (550)
432 TIGR01680 Veg_Stor_Prot vegeta 21.9 55 0.0012 34.7 1.9 37 79-115 116-155 (275)
433 PF02841 GBP_C: Guanylate-bind 21.6 79 0.0017 33.4 3.0 117 88-209 1-127 (297)
434 KOG4056 Translocase of outer m 21.4 2.8E+02 0.006 26.8 6.2 37 385-421 78-114 (143)
435 KOG2997 F-box protein FBX9 [Ge 21.4 1.2E+02 0.0025 33.2 4.2 39 383-421 14-52 (366)
436 cd02677 MIT_SNX15 MIT: domain 21.0 4.1E+02 0.0089 22.5 6.7 29 468-496 10-38 (75)
437 TIGR01675 plant-AP plant acid 20.7 71 0.0015 32.9 2.4 45 79-133 92-138 (229)
438 KOG0276 Vesicle coat complex C 20.4 1.9E+02 0.0041 34.2 5.8 73 380-452 658-746 (794)
439 PF01239 PPTA: Protein prenylt 20.0 2.9E+02 0.0063 18.8 4.7 29 446-477 2-30 (31)
No 1
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.93 E-value=5.9e-26 Score=239.97 Aligned_cols=165 Identities=22% Similarity=0.195 Sum_probs=151.6
Q ss_pred ccCCccceehhhccccccccCCCC---CCCCccHHHHHHHHHHHhHhhHHhhcCChHHHHHHHHHHHHHHHHHHHHHHcC
Q 007571 326 DHKKLGDSIVNVLQDCIQLQGTVR---SSPSNRSKEQIEELLNSRQRLKWEKNMLKEDLHIKQAAALVVKLEGNSLFSAG 402 (598)
Q Consensus 326 ~~~k~GE~~~~~L~pdy~~g~~g~---~ip~~~tl~~~~ELl~~kek~k~e~~ms~eElee~~~~A~~lKeeGN~lfk~G 402 (598)
.+|++||++.+++.|+|+||..+. .|||++++.|+++|++|..+....|.|..+ +++..|...|+.||.+|+.|
T Consensus 146 ~~M~~GE~a~v~i~~~YayG~~~~~~p~IPPnA~l~yEVeL~~f~~~~~~s~~~~~~---e~l~~A~~~ke~Gn~~fK~g 222 (397)
T KOG0543|consen 146 RMMKVGEVALVTIDPKYAYGEEGGEPPLIPPNATLLYEVELLDFELKEDESWKMFAE---ERLEAADRKKERGNVLFKEG 222 (397)
T ss_pred HhcCccceEEEEeCcccccCCCCCCCCCCCCCceEEEEEEEEeeecCcccccccchH---HHHHHHHHHHHhhhHHHhhc
Confidence 459999999999999999994444 899999999999999998777778888776 45899999999999999999
Q ss_pred CHHHHHHHHHHHHHhCCCC----------chHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCcCHHHHHHHHH
Q 007571 403 NISGAASKYSEALALCPMR----------SKKERVVLYSNRAQCHLLMQQPLAAISDATRALCLHNPLNRHAKSLWRRAQ 472 (598)
Q Consensus 403 dY~eAIe~YskALel~P~~----------~~~~~a~ly~NRA~cylKLgdyeeAI~D~~kALeLdP~~~~~~KAyyRRAq 472 (598)
+|..|+..|.+|+...+.. ....+..+|+|+|+||+|+++|.+|+..|+++|+++|+ |+||+||||+
T Consensus 223 k~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~---N~KALyRrG~ 299 (397)
T KOG0543|consen 223 KFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLELDPN---NVKALYRRGQ 299 (397)
T ss_pred hHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhcCCC---chhHHHHHHH
Confidence 9999999999999987643 22457899999999999999999999999999999999 9999999999
Q ss_pred HHHHhhcHHHHHHHHHHHHHHhcc
Q 007571 473 AYDMLALAKESLLDAILFINECSQ 496 (598)
Q Consensus 473 Ay~~LGdy~EAl~d~~kALel~~k 496 (598)
|+..+|+|+.|+.+|++++++.|.
T Consensus 300 A~l~~~e~~~A~~df~ka~k~~P~ 323 (397)
T KOG0543|consen 300 ALLALGEYDLARDDFQKALKLEPS 323 (397)
T ss_pred HHHhhccHHHHHHHHHHHHHhCCC
Confidence 999999999999999999999987
No 2
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.82 E-value=2.9e-19 Score=174.80 Aligned_cols=124 Identities=35% Similarity=0.456 Sum_probs=117.7
Q ss_pred HHhhcCChHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHHHcCChHHHHHHH
Q 007571 371 KWEKNMLKEDLHIKQAAALVVKLEGNSLFSAGNISGAASKYSEALALCPMRSKKERVVLYSNRAQCHLLMQQPLAAISDA 450 (598)
Q Consensus 371 k~e~~ms~eElee~~~~A~~lKeeGN~lfk~GdY~eAIe~YskALel~P~~~~~~~a~ly~NRA~cylKLgdyeeAI~D~ 450 (598)
..+..+++++....+..+..+|.+||.+|++|+|.+|...|+.||+++|..+.+.++.+|+|||.|++|++.++.||.+|
T Consensus 78 e~E~i~~deek~k~~~kad~lK~EGN~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dc 157 (271)
T KOG4234|consen 78 EIEKIFSDEEKDKAIEKADSLKKEGNELFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDC 157 (271)
T ss_pred HHHHhcCcHHHHHHHHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHH
Confidence 34567788888888999999999999999999999999999999999999889999999999999999999999999999
Q ss_pred HHHHHhCCCCCcCHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHhccC
Q 007571 451 TRALCLHNPLNRHAKSLWRRAQAYDMLALAKESLLDAILFINECSQS 497 (598)
Q Consensus 451 ~kALeLdP~~~~~~KAyyRRAqAy~~LGdy~EAl~d~~kALel~~k~ 497 (598)
++||+|+|. +.||+.|||.+|..+.+|++|+.||++.++..|..
T Consensus 158 sKaiel~pt---y~kAl~RRAeayek~ek~eealeDyKki~E~dPs~ 201 (271)
T KOG4234|consen 158 SKAIELNPT---YEKALERRAEAYEKMEKYEEALEDYKKILESDPSR 201 (271)
T ss_pred HhhHhcCch---hHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCcch
Confidence 999999999 99999999999999999999999999999998863
No 3
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.78 E-value=1.3e-18 Score=178.75 Aligned_cols=106 Identities=27% Similarity=0.285 Sum_probs=103.2
Q ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCcC
Q 007571 384 KQAAALVVKLEGNSLFSAGNISGAASKYSEALALCPMRSKKERVVLYSNRAQCHLLMQQPLAAISDATRALCLHNPLNRH 463 (598)
Q Consensus 384 ~~~~A~~lKeeGN~lfk~GdY~eAIe~YskALel~P~~~~~~~a~ly~NRA~cylKLgdyeeAI~D~~kALeLdP~~~~~ 463 (598)
....|+.+|.+||.+++.++|.+|+.+|++||+++|.+ +++|+|||++|.+||.|+.|++||..||.+||. +
T Consensus 77 ~~~~AE~LK~eGN~~m~~~~Y~eAv~kY~~AI~l~P~n-----AVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~---y 148 (304)
T KOG0553|consen 77 DKALAESLKNEGNKLMKNKDYQEAVDKYTEAIELDPTN-----AVYYCNRAAAYSKLGEYEDAVKDCESALSIDPH---Y 148 (304)
T ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCc-----chHHHHHHHHHHHhcchHHHHHHHHHHHhcChH---H
Confidence 46789999999999999999999999999999999999 999999999999999999999999999999999 9
Q ss_pred HHHHHHHHHHHHHhhcHHHHHHHHHHHHHHhccC
Q 007571 464 AKSLWRRAQAYDMLALAKESLLDAILFINECSQS 497 (598)
Q Consensus 464 ~KAyyRRAqAy~~LGdy~EAl~d~~kALel~~k~ 497 (598)
.|+|-|+|.||+.+|+|.+|+..|+++|++.|.+
T Consensus 149 skay~RLG~A~~~~gk~~~A~~aykKaLeldP~N 182 (304)
T KOG0553|consen 149 SKAYGRLGLAYLALGKYEEAIEAYKKALELDPDN 182 (304)
T ss_pred HHHHHHHHHHHHccCcHHHHHHHHHhhhccCCCc
Confidence 9999999999999999999999999999999873
No 4
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.72 E-value=3.2e-17 Score=176.41 Aligned_cols=132 Identities=33% Similarity=0.446 Sum_probs=113.7
Q ss_pred hcCChHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 007571 374 KNMLKEDLHIKQAAALVVKLEGNSLFSAGNISGAASKYSEALALCPMRSKKERVVLYSNRAQCHLLMQQPLAAISDATRA 453 (598)
Q Consensus 374 ~~ms~eElee~~~~A~~lKeeGN~lfk~GdY~eAIe~YskALel~P~~~~~~~a~ly~NRA~cylKLgdyeeAI~D~~kA 453 (598)
..++.++ +.+.|..+|.+||.+|++|+|++||++|++||+++|+. ++.|+|||+||..+|+|++.++||++|
T Consensus 104 ~a~~~e~---~~k~A~~lK~~GN~~f~~kkY~eAIkyY~~AI~l~p~e-----piFYsNraAcY~~lgd~~~Vied~TkA 175 (606)
T KOG0547|consen 104 KAMLKEE---RLKYAAALKTKGNKFFRNKKYDEAIKYYTQAIELCPDE-----PIFYSNRAACYESLGDWEKVIEDCTKA 175 (606)
T ss_pred hccChHH---HHHHHHHHHhhhhhhhhcccHHHHHHHHHHHHhcCCCC-----chhhhhHHHHHHHHhhHHHHHHHHHHH
Confidence 4555554 47899999999999999999999999999999999998 999999999999999999999999999
Q ss_pred HHhCCCCCcCHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHhccCCCCchhhccCChHHHHHHHHHHHHHHH
Q 007571 454 LCLHNPLNRHAKSLWRRAQAYDMLALAKESLLDAILFINECSQSNDPDLSLRQNKVPDYAERLVKKQMRAA 524 (598)
Q Consensus 454 LeLdP~~~~~~KAyyRRAqAy~~LGdy~EAl~d~~kALel~~k~~d~~~~~r~~Ki~~~ierlL~Kqk~a~ 524 (598)
|+++|+ ++|||+|||.|+..+|++++|+.|.... -+...=. +..+.-.++|.|+++-...
T Consensus 176 LEl~P~---Y~KAl~RRA~A~E~lg~~~eal~D~tv~-ci~~~F~-------n~s~~~~~eR~Lkk~a~~k 235 (606)
T KOG0547|consen 176 LELNPD---YVKALLRRASAHEQLGKFDEALFDVTVL-CILEGFQ-------NASIEPMAERVLKKQAMKK 235 (606)
T ss_pred hhcCcH---HHHHHHHHHHHHHhhccHHHHHHhhhHH-HHhhhcc-------cchhHHHHHHHHHHHHHHH
Confidence 999999 9999999999999999999999987543 2211100 4557888999998765543
No 5
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.64 E-value=2.2e-15 Score=163.85 Aligned_cols=118 Identities=24% Similarity=0.257 Sum_probs=109.5
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCcCHH
Q 007571 386 AAALVVKLEGNSLFSAGNISGAASKYSEALALCPMRSKKERVVLYSNRAQCHLLMQQPLAAISDATRALCLHNPLNRHAK 465 (598)
Q Consensus 386 ~~A~~lKeeGN~lfk~GdY~eAIe~YskALel~P~~~~~~~a~ly~NRA~cylKLgdyeeAI~D~~kALeLdP~~~~~~K 465 (598)
+.+...+.+||.+|+.|+|..|+..|++||..+|++ +.+|+|||.||++++.+..|++||.++|+++|+ +.|
T Consensus 356 e~A~e~r~kGne~Fk~gdy~~Av~~YteAIkr~P~D-----a~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~---~~k 427 (539)
T KOG0548|consen 356 EKAEEEREKGNEAFKKGDYPEAVKHYTEAIKRDPED-----ARLYSNRAACYLKLGEYPEALKDAKKCIELDPN---FIK 427 (539)
T ss_pred hHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCch-----hHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCch---HHH
Confidence 458889999999999999999999999999999999 999999999999999999999999999999999 999
Q ss_pred HHHHHHHHHHHhhcHHHHHHHHHHHHHHhccCCCCchhhccCChHHHHHHHHHHHHHHH
Q 007571 466 SLWRRAQAYDMLALAKESLLDAILFINECSQSNDPDLSLRQNKVPDYAERLVKKQMRAA 524 (598)
Q Consensus 466 AyyRRAqAy~~LGdy~EAl~d~~kALel~~k~~d~~~~~r~~Ki~~~ierlL~Kqk~a~ 524 (598)
+|+|.|.|+..+.+|+.|++.|.++++..|+ ..++...+.+++.++
T Consensus 428 gy~RKg~al~~mk~ydkAleay~eale~dp~-------------~~e~~~~~~rc~~a~ 473 (539)
T KOG0548|consen 428 AYLRKGAALRAMKEYDKALEAYQEALELDPS-------------NAEAIDGYRRCVEAQ 473 (539)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCch-------------hHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999775 235666677777765
No 6
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=99.64 E-value=9e-17 Score=160.71 Aligned_cols=192 Identities=20% Similarity=0.224 Sum_probs=149.0
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCcCHHH
Q 007571 387 AALVVKLEGNSLFSAGNISGAASKYSEALALCPMRSKKERVVLYSNRAQCHLLMQQPLAAISDATRALCLHNPLNRHAKS 466 (598)
Q Consensus 387 ~A~~lKeeGN~lfk~GdY~eAIe~YskALel~P~~~~~~~a~ly~NRA~cylKLgdyeeAI~D~~kALeLdP~~~~~~KA 466 (598)
.+..++++||.+|...+|..||..|++||.++|.. +++|.|||.||+++++|+.+..||.+|++++|+ .+|+
T Consensus 9 ~a~qlkE~gnk~f~~k~y~~ai~~y~raI~~nP~~-----~~Y~tnralchlk~~~~~~v~~dcrralql~~N---~vk~ 80 (284)
T KOG4642|consen 9 SAEQLKEQGNKCFIPKRYDDAIDCYSRAICINPTV-----ASYYTNRALCHLKLKHWEPVEEDCRRALQLDPN---LVKA 80 (284)
T ss_pred HHHHHHhccccccchhhhchHHHHHHHHHhcCCCc-----chhhhhHHHHHHHhhhhhhhhhhHHHHHhcChH---HHHH
Confidence 58889999999999999999999999999999998 999999999999999999999999999999999 9999
Q ss_pred HHHHHHHHHHhhcHHHHHHHHHHHHHHhccCCCCchhhccCChHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCCCCCCCc
Q 007571 467 LWRRAQAYDMLALAKESLLDAILFINECSQSNDPDLSLRQNKVPDYAERLVKKQMRAAWLFREAAIKHGGVHGEGNSGNI 546 (598)
Q Consensus 467 yyRRAqAy~~LGdy~EAl~d~~kALel~~k~~d~~~~~r~~Ki~~~ierlL~Kqk~a~~~f~eA~~k~~~i~~d~~~ed~ 546 (598)
+|-+|++++....|++|+..+.+|..+.-.. .......+...|.+++...|...+..+..+.++.-..-+.+
T Consensus 81 h~flg~~~l~s~~~~eaI~~Lqra~sl~r~~--------~~~~~~di~~~L~~ak~~~w~v~e~~Ri~Q~~El~~yl~sl 152 (284)
T KOG4642|consen 81 HYFLGQWLLQSKGYDEAIKVLQRAYSLLREQ--------PFTFGDDIPKALRDAKKKRWEVSEEKRIRQELELHSYLESL 152 (284)
T ss_pred HHHHHHHHHhhccccHHHHHHHHHHHHHhcC--------CCCCcchHHHHHHHHHhCccchhHHHHHHHHhhHHHHHHHH
Confidence 9999999999999999999999998876542 23356678889999999999988888865544333321111
Q ss_pred cccc--cCCCCccccCcCCCCCCCCCCCCCCccccc---------ccchhhhcccCCCCCC
Q 007571 547 YGHE--TDDSEWETASESDIGNDGRDEMGDEDDDSE---------WKNEDERKDKYDKPPM 596 (598)
Q Consensus 547 ~~se--~~dsewe~a~e~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~ 596 (598)
+... .+-++|+..+++++ +-+.---+..+++| +++++|++..|.+|++
T Consensus 153 ie~~~~~~~s~~~~N~~sde--~~k~~q~~~~~~~d~~~kel~elf~~v~e~rk~rEvpd~ 211 (284)
T KOG4642|consen 153 IEGDRERELSEWQENGESDE--HLKTMQVPIEQDHDHTTKELSELFSKVDEKRKKREVPDY 211 (284)
T ss_pred hccchhhHHHHHHHcCCChH--HHhhhcchhHHHHHHHHHHHHHHHHHHHHHhccccccch
Confidence 1111 11233544433331 22111112222233 9999999999999986
No 7
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.61 E-value=6.4e-15 Score=148.06 Aligned_cols=170 Identities=22% Similarity=0.218 Sum_probs=140.2
Q ss_pred hhcc--cccCCccceehhhccccccccCCCC-----CCCCccHHHHHHHHHHHh---HhhHHhhcCChHHHHHHHHHHHH
Q 007571 321 ITNL--GDHKKLGDSIVNVLQDCIQLQGTVR-----SSPSNRSKEQIEELLNSR---QRLKWEKNMLKEDLHIKQAAALV 390 (598)
Q Consensus 321 L~~L--g~~~k~GE~~~~~L~pdy~~g~~g~-----~ip~~~tl~~~~ELl~~k---ek~k~e~~ms~eElee~~~~A~~ 390 (598)
||.+ |+++..+.+....+..-+++...|. ...+...+.|..+++... +.....|.|+++|+ .+....
T Consensus 104 LRdia~GK~p~e~~~H~Cg~a~m~~~~glGyedLDeL~knPqpL~FviellqVe~P~qYq~e~WqlsddeK---mkav~~ 180 (329)
T KOG0545|consen 104 LRDIAQGKDPTEWHRHCCGLANMFAYHGLGYEDLDELQKNPQPLVFVIELLQVEAPSQYQRETWQLSDDEK---MKAVPV 180 (329)
T ss_pred HHHHhcCCCcchhhhhhhhhHHHHHhcCCChhhHHHHhhCCCceEeehhhhhccCchhhccccccCCchHh---hhhhHH
Confidence 5666 7777777776666664454444443 445556788888888865 44556699999865 788999
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhC--------CCCc-----hHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHhC
Q 007571 391 VKLEGNSLFSAGNISGAASKYSEALALC--------PMRS-----KKERVVLYSNRAQCHLLMQQPLAAISDATRALCLH 457 (598)
Q Consensus 391 lKeeGN~lfk~GdY~eAIe~YskALel~--------P~~~-----~~~~a~ly~NRA~cylKLgdyeeAI~D~~kALeLd 457 (598)
+.++||.+|+.|+|.+|+.+|..||-.. |.++ ......++.|.++|+++.++|-++++.|+.+|..+
T Consensus 181 l~q~GN~lfk~~~ykEA~~~YreAi~~l~~L~lkEkP~e~eW~eLdk~~tpLllNy~QC~L~~~e~yevleh~seiL~~~ 260 (329)
T KOG0545|consen 181 LHQEGNRLFKLGRYKEASSKYREAIICLRNLQLKEKPGEPEWLELDKMITPLLLNYCQCLLKKEEYYEVLEHCSEILRHH 260 (329)
T ss_pred HHHhhhhhhhhccHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhhhHHHHhHHHHHhhHHHHHHHHHHHHHHHhcC
Confidence 9999999999999999999999998653 3331 24468899999999999999999999999999999
Q ss_pred CCCCcCHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHhcc
Q 007571 458 NPLNRHAKSLWRRAQAYDMLALAKESLLDAILFINECSQ 496 (598)
Q Consensus 458 P~~~~~~KAyyRRAqAy~~LGdy~EAl~d~~kALel~~k 496 (598)
|. |+|||||||+|+...-+..+|.+||.++|++.|.
T Consensus 261 ~~---nvKA~frRakAhaa~Wn~~eA~~D~~~vL~ldps 296 (329)
T KOG0545|consen 261 PG---NVKAYFRRAKAHAAVWNEAEAKADLQKVLELDPS 296 (329)
T ss_pred Cc---hHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcChh
Confidence 99 9999999999999999999999999999999764
No 8
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=99.59 E-value=2.9e-15 Score=156.03 Aligned_cols=107 Identities=27% Similarity=0.231 Sum_probs=102.2
Q ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCcC
Q 007571 384 KQAAALVVKLEGNSLFSAGNISGAASKYSEALALCPMRSKKERVVLYSNRAQCHLLMQQPLAAISDATRALCLHNPLNRH 463 (598)
Q Consensus 384 ~~~~A~~lKeeGN~lfk~GdY~eAIe~YskALel~P~~~~~~~a~ly~NRA~cylKLgdyeeAI~D~~kALeLdP~~~~~ 463 (598)
.+..+..+|++||.||++|+|++||.+|+++|...|.+ +++|.|||.+|+++++|..|..||+.|+.||-. +
T Consensus 93 LL~~~SEiKE~GN~yFKQgKy~EAIDCYs~~ia~~P~N-----pV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~---Y 164 (536)
T KOG4648|consen 93 LLKKASEIKERGNTYFKQGKYEEAIDCYSTAIAVYPHN-----PVYHINRALAYLKQKSFAQAEEDCEAAIALDKL---Y 164 (536)
T ss_pred HHHhhHHHHHhhhhhhhccchhHHHHHhhhhhccCCCC-----ccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHH---H
Confidence 36677789999999999999999999999999999998 999999999999999999999999999999998 9
Q ss_pred HHHHHHHHHHHHHhhcHHHHHHHHHHHHHHhccCC
Q 007571 464 AKSLWRRAQAYDMLALAKESLLDAILFINECSQSN 498 (598)
Q Consensus 464 ~KAyyRRAqAy~~LGdy~EAl~d~~kALel~~k~~ 498 (598)
.|||-|||+|...||+..+|.+||+.+|.+.|++.
T Consensus 165 ~KAYSRR~~AR~~Lg~~~EAKkD~E~vL~LEP~~~ 199 (536)
T KOG4648|consen 165 VKAYSRRMQARESLGNNMEAKKDCETVLALEPKNI 199 (536)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHhHHHHHhhCcccH
Confidence 99999999999999999999999999999988743
No 9
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.57 E-value=2.9e-14 Score=151.45 Aligned_cols=108 Identities=31% Similarity=0.318 Sum_probs=102.7
Q ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCcCH
Q 007571 385 QAAALVVKLEGNSLFSAGNISGAASKYSEALALCPMRSKKERVVLYSNRAQCHLLMQQPLAAISDATRALCLHNPLNRHA 464 (598)
Q Consensus 385 ~~~A~~lKeeGN~lfk~GdY~eAIe~YskALel~P~~~~~~~a~ly~NRA~cylKLgdyeeAI~D~~kALeLdP~~~~~~ 464 (598)
.+..+..++.||.+|++|+|..|-++|+.||.++|.+ .+..+.+|.|||.++.++|+..+||.||+.|+.|||. +.
T Consensus 246 ~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n-~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~s---yi 321 (486)
T KOG0550|consen 246 PKKLEVKKERGNDAFKNGNYRKAYECYTEALNIDPSN-KKTNAKLYGNRALVNIRLGRLREAISDCNEALKIDSS---YI 321 (486)
T ss_pred HHHHHHHHhhhhhHhhccchhHHHHHHHHhhcCCccc-cchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCHH---HH
Confidence 4678899999999999999999999999999999995 6778999999999999999999999999999999999 99
Q ss_pred HHHHHHHHHHHHhhcHHHHHHHHHHHHHHhcc
Q 007571 465 KSLWRRAQAYDMLALAKESLLDAILFINECSQ 496 (598)
Q Consensus 465 KAyyRRAqAy~~LGdy~EAl~d~~kALel~~k 496 (598)
|||.+||+|++.++++++|++||+++++....
T Consensus 322 kall~ra~c~l~le~~e~AV~d~~~a~q~~~s 353 (486)
T KOG0550|consen 322 KALLRRANCHLALEKWEEAVEDYEKAMQLEKD 353 (486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence 99999999999999999999999999998653
No 10
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=99.51 E-value=1e-13 Score=144.23 Aligned_cols=106 Identities=26% Similarity=0.223 Sum_probs=97.1
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCcCHH
Q 007571 386 AAALVVKLEGNSLFSAGNISGAASKYSEALALCPMRSKKERVVLYSNRAQCHLLMQQPLAAISDATRALCLHNPLNRHAK 465 (598)
Q Consensus 386 ~~A~~lKeeGN~lfk~GdY~eAIe~YskALel~P~~~~~~~a~ly~NRA~cylKLgdyeeAI~D~~kALeLdP~~~~~~K 465 (598)
+.|..+|++||.+|+.++|..|+..|+++|+..-.+ ++..+++|+|||+|.+.+|+|..||.||.+|+.++|. |.|
T Consensus 79 E~Aen~KeeGN~~fK~Kryk~A~~~Yt~Glk~kc~D-~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~~P~---h~K 154 (390)
T KOG0551|consen 79 EQAENYKEEGNEYFKEKRYKDAVESYTEGLKKKCAD-PDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKLKPT---HLK 154 (390)
T ss_pred HHHHHHHHHhHHHHHhhhHHHHHHHHHHHHhhcCCC-ccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCcc---hhh
Confidence 379999999999999999999999999999875443 4678999999999999999999999999999999999 999
Q ss_pred HHHHHHHHHHHhhcHHHHHHHHHHHHHHhc
Q 007571 466 SLWRRAQAYDMLALAKESLLDAILFINECS 495 (598)
Q Consensus 466 AyyRRAqAy~~LGdy~EAl~d~~kALel~~ 495 (598)
||||-|+|++.|.++++|+..+...++...
T Consensus 155 a~~R~Akc~~eLe~~~~a~nw~ee~~~~d~ 184 (390)
T KOG0551|consen 155 AYIRGAKCLLELERFAEAVNWCEEGLQIDD 184 (390)
T ss_pred hhhhhhHHHHHHHHHHHHHHHHhhhhhhhH
Confidence 999999999999999999988877765544
No 11
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.47 E-value=1.2e-13 Score=150.68 Aligned_cols=101 Identities=30% Similarity=0.326 Sum_probs=98.4
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCcCHHHH
Q 007571 388 ALVVKLEGNSLFSAGNISGAASKYSEALALCPMRSKKERVVLYSNRAQCHLLMQQPLAAISDATRALCLHNPLNRHAKSL 467 (598)
Q Consensus 388 A~~lKeeGN~lfk~GdY~eAIe~YskALel~P~~~~~~~a~ly~NRA~cylKLgdyeeAI~D~~kALeLdP~~~~~~KAy 467 (598)
+..++++||..|..|+|+.||.+|++||.++|.+ .++|+||+.||.++++|.+|++|.++.++++|+ ++|+|
T Consensus 2 a~e~k~kgnaa~s~~d~~~ai~~~t~ai~l~p~n-----hvlySnrsaa~a~~~~~~~al~da~k~~~l~p~---w~kgy 73 (539)
T KOG0548|consen 2 AVELKEKGNAAFSSGDFETAIRLFTEAIMLSPTN-----HVLYSNRSAAYASLGSYEKALKDATKTRRLNPD---WAKGY 73 (539)
T ss_pred hhHHHHHHHhhcccccHHHHHHHHHHHHccCCCc-----cchhcchHHHHHHHhhHHHHHHHHHHHHhcCCc---hhhHH
Confidence 5678999999999999999999999999999999 999999999999999999999999999999999 99999
Q ss_pred HHHHHHHHHhhcHHHHHHHHHHHHHHhcc
Q 007571 468 WRRAQAYDMLALAKESLLDAILFINECSQ 496 (598)
Q Consensus 468 yRRAqAy~~LGdy~EAl~d~~kALel~~k 496 (598)
.|+|.++..+|+|++|+..|.+.|+..|.
T Consensus 74 ~r~Gaa~~~lg~~~eA~~ay~~GL~~d~~ 102 (539)
T KOG0548|consen 74 SRKGAALFGLGDYEEAILAYSEGLEKDPS 102 (539)
T ss_pred HHhHHHHHhcccHHHHHHHHHHHhhcCCc
Confidence 99999999999999999999999999886
No 12
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=99.45 E-value=1.3e-12 Score=139.49 Aligned_cols=101 Identities=22% Similarity=0.220 Sum_probs=97.6
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCcCHHHH
Q 007571 388 ALVVKLEGNSLFSAGNISGAASKYSEALALCPMRSKKERVVLYSNRAQCHLLMQQPLAAISDATRALCLHNPLNRHAKSL 467 (598)
Q Consensus 388 A~~lKeeGN~lfk~GdY~eAIe~YskALel~P~~~~~~~a~ly~NRA~cylKLgdyeeAI~D~~kALeLdP~~~~~~KAy 467 (598)
+..++.+|+.+|..|+|.+|+..|++||+++|.+ ..+|.|||.||+++|+|++|+.++++||.++|+ ++.+|
T Consensus 2 ~~~l~~~a~~a~~~~~~~~Ai~~~~~Al~~~P~~-----~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~---~~~a~ 73 (356)
T PLN03088 2 AKDLEDKAKEAFVDDDFALAVDLYTQAIDLDPNN-----AELYADRAQANIKLGNFTEAVADANKAIELDPS---LAKAY 73 (356)
T ss_pred cHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC---CHHHH
Confidence 3458899999999999999999999999999999 999999999999999999999999999999999 99999
Q ss_pred HHHHHHHHHhhcHHHHHHHHHHHHHHhcc
Q 007571 468 WRRAQAYDMLALAKESLLDAILFINECSQ 496 (598)
Q Consensus 468 yRRAqAy~~LGdy~EAl~d~~kALel~~k 496 (598)
+++|.+|+.+|+|++|+..|++++++.|+
T Consensus 74 ~~lg~~~~~lg~~~eA~~~~~~al~l~P~ 102 (356)
T PLN03088 74 LRKGTACMKLEEYQTAKAALEKGASLAPG 102 (356)
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHhCCC
Confidence 99999999999999999999999999886
No 13
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.44 E-value=1.6e-12 Score=147.06 Aligned_cols=110 Identities=33% Similarity=0.354 Sum_probs=101.1
Q ss_pred hhcCChHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHHHcCChHHHHHHHHH
Q 007571 373 EKNMLKEDLHIKQAAALVVKLEGNSLFSAGNISGAASKYSEALALCPMRSKKERVVLYSNRAQCHLLMQQPLAAISDATR 452 (598)
Q Consensus 373 e~~ms~eElee~~~~A~~lKeeGN~lfk~GdY~eAIe~YskALel~P~~~~~~~a~ly~NRA~cylKLgdyeeAI~D~~k 452 (598)
.+.+++++. ...+..+++.||.+|+.|+|++|+..|++||.+.|+ +..|.|+|.||+++|+|++|+.+|++
T Consensus 115 ~~~~~~~~~---~~~a~~~k~~G~~~~~~~~~~~Ai~~y~~al~~~p~------~~~~~n~a~~~~~l~~~~~Ai~~~~~ 185 (615)
T TIGR00990 115 VANLSEEER---KKYAAKLKEKGNKAYRNKDFNKAIKLYSKAIECKPD------PVYYSNRAACHNALGDWEKVVEDTTA 185 (615)
T ss_pred cccCCHHHH---HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc------hHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 466777653 577899999999999999999999999999999996 57899999999999999999999999
Q ss_pred HHHhCCCCCcCHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHh
Q 007571 453 ALCLHNPLNRHAKSLWRRAQAYDMLALAKESLLDAILFINEC 494 (598)
Q Consensus 453 ALeLdP~~~~~~KAyyRRAqAy~~LGdy~EAl~d~~kALel~ 494 (598)
||+++|+ +.++++++|.+|..+|++++|+.+|..++...
T Consensus 186 al~l~p~---~~~a~~~~a~a~~~lg~~~eA~~~~~~~~~~~ 224 (615)
T TIGR00990 186 ALELDPD---YSKALNRRANAYDGLGKYADALLDLTASCIID 224 (615)
T ss_pred HHHcCCC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 9999999 99999999999999999999999998776653
No 14
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=99.37 E-value=6.5e-13 Score=143.82 Aligned_cols=104 Identities=28% Similarity=0.267 Sum_probs=100.4
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCcCHHH
Q 007571 387 AALVVKLEGNSLFSAGNISGAASKYSEALALCPMRSKKERVVLYSNRAQCHLLMQQPLAAISDATRALCLHNPLNRHAKS 466 (598)
Q Consensus 387 ~A~~lKeeGN~lfk~GdY~eAIe~YskALel~P~~~~~~~a~ly~NRA~cylKLgdyeeAI~D~~kALeLdP~~~~~~KA 466 (598)
.|+.++.++|.+|+.++|+.|+..|+|||+++|+. +.++.|||++|+|.++|..|+.|+.+||+++|. +.|+
T Consensus 3 ~a~e~k~ean~~l~~~~fd~avdlysKaI~ldpnc-----a~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~---~~K~ 74 (476)
T KOG0376|consen 3 SAEELKNEANEALKDKVFDVAVDLYSKAIELDPNC-----AIYFANRALAHLKVESFGGALHDALKAIELDPT---YIKA 74 (476)
T ss_pred hhhhhhhHHhhhcccchHHHHHHHHHHHHhcCCcc-----eeeechhhhhheeechhhhHHHHHHhhhhcCch---hhhe
Confidence 47789999999999999999999999999999999 999999999999999999999999999999999 9999
Q ss_pred HHHHHHHHHHhhcHHHHHHHHHHHHHHhccCC
Q 007571 467 LWRRAQAYDMLALAKESLLDAILFINECSQSN 498 (598)
Q Consensus 467 yyRRAqAy~~LGdy~EAl~d~~kALel~~k~~ 498 (598)
|+|+|.+.+.++++.+|+.+|++...+.|++.
T Consensus 75 Y~rrg~a~m~l~~~~~A~~~l~~~~~l~Pnd~ 106 (476)
T KOG0376|consen 75 YVRRGTAVMALGEFKKALLDLEKVKKLAPNDP 106 (476)
T ss_pred eeeccHHHHhHHHHHHHHHHHHHhhhcCcCcH
Confidence 99999999999999999999999999999743
No 15
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=99.30 E-value=6.7e-11 Score=110.61 Aligned_cols=99 Identities=16% Similarity=0.123 Sum_probs=95.4
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCcCHHHHHHH
Q 007571 391 VKLEGNSLFSAGNISGAASKYSEALALCPMRSKKERVVLYSNRAQCHLLMQQPLAAISDATRALCLHNPLNRHAKSLWRR 470 (598)
Q Consensus 391 lKeeGN~lfk~GdY~eAIe~YskALel~P~~~~~~~a~ly~NRA~cylKLgdyeeAI~D~~kALeLdP~~~~~~KAyyRR 470 (598)
+...|..++..|+|++|+..|.+++.++|.+ ..+|.++|.++..+|++++|+..|.+|+.++|+ ++.+++++
T Consensus 27 ~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~-----~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p~---~~~a~~~l 98 (144)
T PRK15359 27 VYASGYASWQEGDYSRAVIDFSWLVMAQPWS-----WRAHIALAGTWMMLKEYTTAINFYGHALMLDAS---HPEPVYQT 98 (144)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCc-----HHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC---CcHHHHHH
Confidence 4567999999999999999999999999999 999999999999999999999999999999999 99999999
Q ss_pred HHHHHHhhcHHHHHHHHHHHHHHhccC
Q 007571 471 AQAYDMLALAKESLLDAILFINECSQS 497 (598)
Q Consensus 471 AqAy~~LGdy~EAl~d~~kALel~~k~ 497 (598)
|.++..+|++++|+..|.++++..|++
T Consensus 99 g~~l~~~g~~~eAi~~~~~Al~~~p~~ 125 (144)
T PRK15359 99 GVCLKMMGEPGLAREAFQTAIKMSYAD 125 (144)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCC
Confidence 999999999999999999999998873
No 16
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=99.25 E-value=1.3e-10 Score=110.88 Aligned_cols=101 Identities=13% Similarity=0.082 Sum_probs=98.0
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCcCHHH
Q 007571 387 AALVVKLEGNSLFSAGNISGAASKYSEALALCPMRSKKERVVLYSNRAQCHLLMQQPLAAISDATRALCLHNPLNRHAKS 466 (598)
Q Consensus 387 ~A~~lKeeGN~lfk~GdY~eAIe~YskALel~P~~~~~~~a~ly~NRA~cylKLgdyeeAI~D~~kALeLdP~~~~~~KA 466 (598)
.-+.+...|..++..|+|++|...|.-...++|.+ +..|.|+|.|+..+|+|.+||..|.+|+.++|+ ++.+
T Consensus 34 ~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~-----~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~d---dp~~ 105 (157)
T PRK15363 34 PLNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWS-----FDYWFRLGECCQAQKHWGEAIYAYGRAAQIKID---APQA 105 (157)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccc-----HHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC---CchH
Confidence 46678999999999999999999999999999999 999999999999999999999999999999999 9999
Q ss_pred HHHHHHHHHHhhcHHHHHHHHHHHHHHhc
Q 007571 467 LWRRAQAYDMLALAKESLLDAILFINECS 495 (598)
Q Consensus 467 yyRRAqAy~~LGdy~EAl~d~~kALel~~ 495 (598)
+++.|+|++.+|+.+.|...|+.++..+.
T Consensus 106 ~~~ag~c~L~lG~~~~A~~aF~~Ai~~~~ 134 (157)
T PRK15363 106 PWAAAECYLACDNVCYAIKALKAVVRICG 134 (157)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHhc
Confidence 99999999999999999999999999995
No 17
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=99.19 E-value=6.1e-10 Score=100.47 Aligned_cols=103 Identities=17% Similarity=0.188 Sum_probs=98.0
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCcCHHH
Q 007571 387 AALVVKLEGNSLFSAGNISGAASKYSEALALCPMRSKKERVVLYSNRAQCHLLMQQPLAAISDATRALCLHNPLNRHAKS 466 (598)
Q Consensus 387 ~A~~lKeeGN~lfk~GdY~eAIe~YskALel~P~~~~~~~a~ly~NRA~cylKLgdyeeAI~D~~kALeLdP~~~~~~KA 466 (598)
.+......|..++..|+|++|+..|++++..+|.+ ..++.++|.+++++|++++|+..+++++.++|+ ++..
T Consensus 16 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~-----~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~---~~~~ 87 (135)
T TIGR02552 16 QLEQIYALAYNLYQQGRYDEALKLFQLLAAYDPYN-----SRYWLGLAACCQMLKEYEEAIDAYALAAALDPD---DPRP 87 (135)
T ss_pred hHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCc-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC---ChHH
Confidence 35668889999999999999999999999999998 999999999999999999999999999999999 9999
Q ss_pred HHHHHHHHHHhhcHHHHHHHHHHHHHHhccC
Q 007571 467 LWRRAQAYDMLALAKESLLDAILFINECSQS 497 (598)
Q Consensus 467 yyRRAqAy~~LGdy~EAl~d~~kALel~~k~ 497 (598)
++.+|.++..+|++++|+..|+++++..|++
T Consensus 88 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 118 (135)
T TIGR02552 88 YFHAAECLLALGEPESALKALDLAIEICGEN 118 (135)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhcccc
Confidence 9999999999999999999999999998863
No 18
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.17 E-value=7.5e-10 Score=115.07 Aligned_cols=102 Identities=20% Similarity=0.025 Sum_probs=98.9
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCcCHHH
Q 007571 387 AALVVKLEGNSLFSAGNISGAASKYSEALALCPMRSKKERVVLYSNRAQCHLLMQQPLAAISDATRALCLHNPLNRHAKS 466 (598)
Q Consensus 387 ~A~~lKeeGN~lfk~GdY~eAIe~YskALel~P~~~~~~~a~ly~NRA~cylKLgdyeeAI~D~~kALeLdP~~~~~~KA 466 (598)
.+..+.+.|..+...|++.+|+..|++|++++|++ +.+|.++|.+|..+|+|++|+..+++|++++|+ +..+
T Consensus 63 ~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~-----~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~---~~~a 134 (296)
T PRK11189 63 RAQLHYERGVLYDSLGLRALARNDFSQALALRPDM-----ADAYNYLGIYLTQAGNFDAAYEAFDSVLELDPT---YNYA 134 (296)
T ss_pred hHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCC-----HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC---CHHH
Confidence 57789999999999999999999999999999999 999999999999999999999999999999999 9999
Q ss_pred HHHHHHHHHHhhcHHHHHHHHHHHHHHhcc
Q 007571 467 LWRRAQAYDMLALAKESLLDAILFINECSQ 496 (598)
Q Consensus 467 yyRRAqAy~~LGdy~EAl~d~~kALel~~k 496 (598)
++++|.++...|++++|+.+|+++++..|+
T Consensus 135 ~~~lg~~l~~~g~~~eA~~~~~~al~~~P~ 164 (296)
T PRK11189 135 YLNRGIALYYGGRYELAQDDLLAFYQDDPN 164 (296)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCCC
Confidence 999999999999999999999999999876
No 19
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=99.12 E-value=1.8e-10 Score=93.11 Aligned_cols=67 Identities=24% Similarity=0.224 Sum_probs=64.2
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHHHcC-ChHHHHHHHHHHHHhCC
Q 007571 387 AALVVKLEGNSLFSAGNISGAASKYSEALALCPMRSKKERVVLYSNRAQCHLLMQ-QPLAAISDATRALCLHN 458 (598)
Q Consensus 387 ~A~~lKeeGN~lfk~GdY~eAIe~YskALel~P~~~~~~~a~ly~NRA~cylKLg-dyeeAI~D~~kALeLdP 458 (598)
.|..+...|+.++..|+|++|+..|++||+++|++ +.+|.|+|.||.++| ++.+|+.++++||+++|
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~-----~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNN-----AEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP 69 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTH-----HHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC-----HHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence 36789999999999999999999999999999998 999999999999999 79999999999999998
No 20
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=99.08 E-value=3e-09 Score=104.93 Aligned_cols=104 Identities=18% Similarity=0.051 Sum_probs=97.5
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHH-HHcCC--hHHHHHHHHHHHHhCCCCCc
Q 007571 386 AAALVVKLEGNSLFSAGNISGAASKYSEALALCPMRSKKERVVLYSNRAQCH-LLMQQ--PLAAISDATRALCLHNPLNR 462 (598)
Q Consensus 386 ~~A~~lKeeGN~lfk~GdY~eAIe~YskALel~P~~~~~~~a~ly~NRA~cy-lKLgd--yeeAI~D~~kALeLdP~~~~ 462 (598)
..+..+...|..+...|+|+.|+..|.+|+++.|++ +.++.+.|.++ ...|+ +++|+..++++++++|+
T Consensus 71 ~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~~-----~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~--- 142 (198)
T PRK10370 71 QNSEQWALLGEYYLWRNDYDNALLAYRQALQLRGEN-----AELYAALATVLYYQAGQHMTPQTREMIDKALALDAN--- 142 (198)
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC-----HHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCC---
Confidence 356678999999999999999999999999999999 99999999985 77787 59999999999999999
Q ss_pred CHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHhccC
Q 007571 463 HAKSLWRRAQAYDMLALAKESLLDAILFINECSQS 497 (598)
Q Consensus 463 ~~KAyyRRAqAy~~LGdy~EAl~d~~kALel~~k~ 497 (598)
++.+++.+|.++..+|+|++|+..++++++..+.+
T Consensus 143 ~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~~~~ 177 (198)
T PRK10370 143 EVTALMLLASDAFMQADYAQAIELWQKVLDLNSPR 177 (198)
T ss_pred ChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Confidence 99999999999999999999999999999998863
No 21
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=99.03 E-value=4.3e-09 Score=83.60 Aligned_cols=97 Identities=25% Similarity=0.213 Sum_probs=91.2
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCcCHHHHHHH
Q 007571 391 VKLEGNSLFSAGNISGAASKYSEALALCPMRSKKERVVLYSNRAQCHLLMQQPLAAISDATRALCLHNPLNRHAKSLWRR 470 (598)
Q Consensus 391 lKeeGN~lfk~GdY~eAIe~YskALel~P~~~~~~~a~ly~NRA~cylKLgdyeeAI~D~~kALeLdP~~~~~~KAyyRR 470 (598)
+...|..++..|++.+|+..+.++++..|.. ..++.++|.++...+++++|+..+++++.+.|. +..+++.+
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~---~~~~~~~~ 74 (100)
T cd00189 3 LLNLGNLYYKLGDYDEALEYYEKALELDPDN-----ADAYYNLAAAYYKLGKYEEALEDYEKALELDPD---NAKAYYNL 74 (100)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHhcCCcc-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCc---chhHHHHH
Confidence 5678899999999999999999999999987 688999999999999999999999999999999 88999999
Q ss_pred HHHHHHhhcHHHHHHHHHHHHHHhc
Q 007571 471 AQAYDMLALAKESLLDAILFINECS 495 (598)
Q Consensus 471 AqAy~~LGdy~EAl~d~~kALel~~ 495 (598)
|.++...|++++|...+.++++..|
T Consensus 75 ~~~~~~~~~~~~a~~~~~~~~~~~~ 99 (100)
T cd00189 75 GLAYYKLGKYEEALEAYEKALELDP 99 (100)
T ss_pred HHHHHHHHhHHHHHHHHHHHHccCC
Confidence 9999999999999999999988754
No 22
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.00 E-value=1.6e-09 Score=120.14 Aligned_cols=205 Identities=20% Similarity=0.116 Sum_probs=131.3
Q ss_pred CChHHHHHHHhhhh--ccchhhhhhhhhhhhhhc-CCcchhHHhhhhhhhhhhhHhhhc-ccccCCccceehhh--cccc
Q 007571 268 SCPGLIEALCNIAR--SSDDWQYMAIDCLLWLLQ-DPSTCHKVIDKAVPTLIDLAEITN-LGDHKKLGDSIVNV--LQDC 341 (598)
Q Consensus 268 ~~~~~i~~lc~isr--ssdd~q~maidcll~l~~-D~~t~~kvld~a~~~lvDl~eL~~-Lg~~~k~GE~~~~~--L~pd 341 (598)
--|+.|++-.|++- -+-.-.+.|++|-++-++ +|+ ..+...|+..|-. .|.-....+..... .+|.
T Consensus 145 l~p~fida~inla~al~~~~~~~~a~~~~~~alqlnP~--------l~ca~s~lgnLlka~Grl~ea~~cYlkAi~~qp~ 216 (966)
T KOG4626|consen 145 LKPKFIDAYINLAAALVTQGDLELAVQCFFEALQLNPD--------LYCARSDLGNLLKAEGRLEEAKACYLKAIETQPC 216 (966)
T ss_pred cCchhhHHHhhHHHHHHhcCCCcccHHHHHHHHhcCcc--------hhhhhcchhHHHHhhcccchhHHHHHHHHhhCCc
Confidence 34666666666542 334456678888887766 655 2333334333211 12222222223222 3466
Q ss_pred ccccCCCCCCCCccHHHHHHHHHHHhHhhHHhhcCChHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 007571 342 IQLQGTVRSSPSNRSKEQIEELLNSRQRLKWEKNMLKEDLHIKQAAALVVKLEGNSLFSAGNISGAASKYSEALALCPMR 421 (598)
Q Consensus 342 y~~g~~g~~ip~~~tl~~~~ELl~~kek~k~e~~ms~eElee~~~~A~~lKeeGN~lfk~GdY~eAIe~YskALel~P~~ 421 (598)
|+-..+.. ........+++..-+.-++...+. ..-+.++.+.||.+-..+.|++|+.+|.+|+.+.|+.
T Consensus 217 fAiawsnL----g~~f~~~Gei~~aiq~y~eAvkld-------P~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~lrpn~ 285 (966)
T KOG4626|consen 217 FAIAWSNL----GCVFNAQGEIWLAIQHYEEAVKLD-------PNFLDAYINLGNVYKEARIFDRAVSCYLRALNLRPNH 285 (966)
T ss_pred eeeeehhc----chHHhhcchHHHHHHHHHHhhcCC-------CcchHHHhhHHHHHHHHhcchHHHHHHHHHHhcCCcc
Confidence 65544331 222333344444322222222222 2356778888888888888888888888888888888
Q ss_pred chHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCcCHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHhccCCC
Q 007571 422 SKKERVVLYSNRAQCHLLMQQPLAAISDATRALCLHNPLNRHAKSLWRRAQAYDMLALAKESLLDAILFINECSQSND 499 (598)
Q Consensus 422 ~~~~~a~ly~NRA~cylKLgdyeeAI~D~~kALeLdP~~~~~~KAyyRRAqAy~~LGdy~EAl~d~~kALel~~k~~d 499 (598)
+.+|.|+|-+|+.+|..+-||..|++||+++|+ .+.||.++|.|+..+|+..+|...|.++|.++++-.|
T Consensus 286 -----A~a~gNla~iYyeqG~ldlAI~~Ykral~~~P~---F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~p~had 355 (966)
T KOG4626|consen 286 -----AVAHGNLACIYYEQGLLDLAIDTYKRALELQPN---FPDAYNNLANALKDKGSVTEAVDCYNKALRLCPNHAD 355 (966)
T ss_pred -----hhhccceEEEEeccccHHHHHHHHHHHHhcCCC---chHHHhHHHHHHHhccchHHHHHHHHHHHHhCCccHH
Confidence 888888888888888888888888888888888 8888888888888888888888888888888886443
No 23
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=98.99 E-value=5.5e-09 Score=109.83 Aligned_cols=103 Identities=19% Similarity=0.134 Sum_probs=98.8
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCcCHHH
Q 007571 387 AALVVKLEGNSLFSAGNISGAASKYSEALALCPMRSKKERVVLYSNRAQCHLLMQQPLAAISDATRALCLHNPLNRHAKS 466 (598)
Q Consensus 387 ~A~~lKeeGN~lfk~GdY~eAIe~YskALel~P~~~~~~~a~ly~NRA~cylKLgdyeeAI~D~~kALeLdP~~~~~~KA 466 (598)
.+....+.|+.++-.|+|..|+..|..|++.+|++ ..+++.||.+|+.+|+-..|+.|++++|++.|+ ..-|
T Consensus 37 dvekhlElGk~lla~~Q~sDALt~yHaAve~dp~~-----Y~aifrRaT~yLAmGksk~al~Dl~rVlelKpD---F~~A 108 (504)
T KOG0624|consen 37 DVEKHLELGKELLARGQLSDALTHYHAAVEGDPNN-----YQAIFRRATVYLAMGKSKAALQDLSRVLELKPD---FMAA 108 (504)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchh-----HHHHHHHHHHHhhhcCCccchhhHHHHHhcCcc---HHHH
Confidence 57788899999999999999999999999999998 999999999999999999999999999999999 9999
Q ss_pred HHHHHHHHHHhhcHHHHHHHHHHHHHHhccC
Q 007571 467 LWRRAQAYDMLALAKESLLDAILFINECSQS 497 (598)
Q Consensus 467 yyRRAqAy~~LGdy~EAl~d~~kALel~~k~ 497 (598)
...||.+++.+|.+++|..||...|+..|.+
T Consensus 109 RiQRg~vllK~Gele~A~~DF~~vl~~~~s~ 139 (504)
T KOG0624|consen 109 RIQRGVVLLKQGELEQAEADFDQVLQHEPSN 139 (504)
T ss_pred HHHhchhhhhcccHHHHHHHHHHHHhcCCCc
Confidence 9999999999999999999999999998753
No 24
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=98.97 E-value=1.4e-08 Score=88.28 Aligned_cols=106 Identities=8% Similarity=-0.051 Sum_probs=94.6
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCcCHHHHH
Q 007571 389 LVVKLEGNSLFSAGNISGAASKYSEALALCPMRSKKERVVLYSNRAQCHLLMQQPLAAISDATRALCLHNPLNRHAKSLW 468 (598)
Q Consensus 389 ~~lKeeGN~lfk~GdY~eAIe~YskALel~P~~~~~~~a~ly~NRA~cylKLgdyeeAI~D~~kALeLdP~~~~~~KAyy 468 (598)
..+...|..+++.|+|++|+..|.+++...|.+ .....++.++|.++++.|+++.|+..+.+++..+|+....+.+++
T Consensus 3 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~ 80 (119)
T TIGR02795 3 EAYYDAALLVLKAGDYADAIQAFQAFLKKYPKS--TYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALL 80 (119)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCc--cccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHH
Confidence 457889999999999999999999999998865 223578899999999999999999999999999988322367899
Q ss_pred HHHHHHHHhhcHHHHHHHHHHHHHHhcc
Q 007571 469 RRAQAYDMLALAKESLLDAILFINECSQ 496 (598)
Q Consensus 469 RRAqAy~~LGdy~EAl~d~~kALel~~k 496 (598)
..|.++..+|++++|+..+.++++..|+
T Consensus 81 ~~~~~~~~~~~~~~A~~~~~~~~~~~p~ 108 (119)
T TIGR02795 81 KLGMSLQELGDKEKAKATLQQVIKRYPG 108 (119)
T ss_pred HHHHHHHHhCChHHHHHHHHHHHHHCcC
Confidence 9999999999999999999999999886
No 25
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=98.96 E-value=3.2e-09 Score=85.77 Aligned_cols=66 Identities=18% Similarity=0.069 Sum_probs=63.7
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCcCHHHHHHHHHHHHHhh-cHHHHHHHHHHHHHHhc
Q 007571 427 VVLYSNRAQCHLLMQQPLAAISDATRALCLHNPLNRHAKSLWRRAQAYDMLA-LAKESLLDAILFINECS 495 (598)
Q Consensus 427 a~ly~NRA~cylKLgdyeeAI~D~~kALeLdP~~~~~~KAyyRRAqAy~~LG-dy~EAl~d~~kALel~~ 495 (598)
+..|.++|.+++.+|+|++|+..+++||+++|+ ++.+++++|.++..+| ++++|+.+|++++++.|
T Consensus 3 a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~---~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 3 AEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPN---NAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP 69 (69)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTT---HHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC---CHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence 788999999999999999999999999999999 9999999999999999 89999999999999865
No 26
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=98.95 E-value=1e-08 Score=95.47 Aligned_cols=106 Identities=26% Similarity=0.307 Sum_probs=96.6
Q ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC-CcC
Q 007571 385 QAAALVVKLEGNSLFSAGNISGAASKYSEALALCPMRSKKERVVLYSNRAQCHLLMQQPLAAISDATRALCLHNPL-NRH 463 (598)
Q Consensus 385 ~~~A~~lKeeGN~lfk~GdY~eAIe~YskALel~P~~~~~~~a~ly~NRA~cylKLgdyeeAI~D~~kALeLdP~~-~~~ 463 (598)
++.+..+--+|-.+...|+.+.|++.|.+||.+.|.. +++|+|||++|...|+.++|+.|.++|+++..+. ..-
T Consensus 40 ~e~S~~LEl~~valaE~g~Ld~AlE~F~qal~l~P~r-----aSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trta 114 (175)
T KOG4555|consen 40 IKASRELELKAIALAEAGDLDGALELFGQALCLAPER-----ASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTA 114 (175)
T ss_pred HHHHHHHHHHHHHHHhccchHHHHHHHHHHHHhcccc-----hHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHH
Confidence 5678888889999999999999999999999999998 9999999999999999999999999999997662 123
Q ss_pred HHHHHHHHHHHHHhhcHHHHHHHHHHHHHHhc
Q 007571 464 AKSLWRRAQAYDMLALAKESLLDAILFINECS 495 (598)
Q Consensus 464 ~KAyyRRAqAy~~LGdy~EAl~d~~kALel~~ 495 (598)
-.+|..||..|..+|+-+.|..||..+-++-.
T Consensus 115 cqa~vQRg~lyRl~g~dd~AR~DFe~AA~LGS 146 (175)
T KOG4555|consen 115 CQAFVQRGLLYRLLGNDDAARADFEAAAQLGS 146 (175)
T ss_pred HHHHHHHHHHHHHhCchHHHHHhHHHHHHhCC
Confidence 47899999999999999999999999998844
No 27
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=98.94 E-value=1.3e-08 Score=115.46 Aligned_cols=103 Identities=22% Similarity=0.180 Sum_probs=81.6
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCcCHH
Q 007571 386 AAALVVKLEGNSLFSAGNISGAASKYSEALALCPMRSKKERVVLYSNRAQCHLLMQQPLAAISDATRALCLHNPLNRHAK 465 (598)
Q Consensus 386 ~~A~~lKeeGN~lfk~GdY~eAIe~YskALel~P~~~~~~~a~ly~NRA~cylKLgdyeeAI~D~~kALeLdP~~~~~~K 465 (598)
..+..+...|..++..|++++|+..|.++++++|.. ...|.++|.++..+|++++|+..++++++++|+ ++.
T Consensus 329 ~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~P~~-----~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~---~~~ 400 (615)
T TIGR00990 329 KEAIALNLRGTFKCLKGKHLEALADLSKSIELDPRV-----TQSYIKRASMNLELGDPDKAEEDFDKALKLNSE---DPD 400 (615)
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCc-----HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC---CHH
Confidence 345667777888888888888888888888888877 777778888888888888888888888888887 778
Q ss_pred HHHHHHHHHHHhhcHHHHHHHHHHHHHHhcc
Q 007571 466 SLWRRAQAYDMLALAKESLLDAILFINECSQ 496 (598)
Q Consensus 466 AyyRRAqAy~~LGdy~EAl~d~~kALel~~k 496 (598)
+++.+|.++..+|++++|+.+|+++++..|+
T Consensus 401 ~~~~lg~~~~~~g~~~~A~~~~~kal~l~P~ 431 (615)
T TIGR00990 401 IYYHRAQLHFIKGEFAQAGKDYQKSIDLDPD 431 (615)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCcc
Confidence 8888888888888888888888888877664
No 28
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=98.88 E-value=5.6e-09 Score=88.22 Aligned_cols=84 Identities=21% Similarity=0.171 Sum_probs=74.2
Q ss_pred HcCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCcCHHHHHHHHHHHHHhhc
Q 007571 400 SAGNISGAASKYSEALALCPMRSKKERVVLYSNRAQCHLLMQQPLAAISDATRALCLHNPLNRHAKSLWRRAQAYDMLAL 479 (598)
Q Consensus 400 k~GdY~eAIe~YskALel~P~~~~~~~a~ly~NRA~cylKLgdyeeAI~D~~kALeLdP~~~~~~KAyyRRAqAy~~LGd 479 (598)
.+|+|+.|+..|.++++..|.+. ....+.++|.||+++|+|++|+..+++ +..+|. ++...+-.|+|+..+|+
T Consensus 1 ~~~~y~~Ai~~~~k~~~~~~~~~---~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~---~~~~~~l~a~~~~~l~~ 73 (84)
T PF12895_consen 1 DQGNYENAIKYYEKLLELDPTNP---NSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPS---NPDIHYLLARCLLKLGK 73 (84)
T ss_dssp HTT-HHHHHHHHHHHHHHHCGTH---HHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHC---HHHHHHHHHHHHHHTT-
T ss_pred CCccHHHHHHHHHHHHHHCCCCh---hHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCC---CHHHHHHHHHHHHHhCC
Confidence 36899999999999999999531 367788899999999999999999999 999998 89999999999999999
Q ss_pred HHHHHHHHHHH
Q 007571 480 AKESLLDAILF 490 (598)
Q Consensus 480 y~EAl~d~~kA 490 (598)
|++|+..|+++
T Consensus 74 y~eAi~~l~~~ 84 (84)
T PF12895_consen 74 YEEAIKALEKA 84 (84)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHhcC
Confidence 99999998875
No 29
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=98.87 E-value=7.6e-08 Score=90.98 Aligned_cols=102 Identities=14% Similarity=-0.041 Sum_probs=67.9
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHhC--CCCCcCH
Q 007571 387 AALVVKLEGNSLFSAGNISGAASKYSEALALCPMRSKKERVVLYSNRAQCHLLMQQPLAAISDATRALCLH--NPLNRHA 464 (598)
Q Consensus 387 ~A~~lKeeGN~lfk~GdY~eAIe~YskALel~P~~~~~~~a~ly~NRA~cylKLgdyeeAI~D~~kALeLd--P~~~~~~ 464 (598)
.+..+...|..++..|++++|+..|.++++..|.+ ..++.|+|.++..+|++++|+..+.+++... |. ..
T Consensus 64 ~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~-----~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~---~~ 135 (234)
T TIGR02521 64 DYLAYLALALYYQQLGELEKAEDSFRRALTLNPNN-----GDVLNNYGTFLCQQGKYEQAMQQFEQAIEDPLYPQ---PA 135 (234)
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC-----HHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccc---ch
Confidence 45556666666777777777777777777766666 5666677777777777777777777776643 22 45
Q ss_pred HHHHHHHHHHHHhhcHHHHHHHHHHHHHHhcc
Q 007571 465 KSLWRRAQAYDMLALAKESLLDAILFINECSQ 496 (598)
Q Consensus 465 KAyyRRAqAy~~LGdy~EAl~d~~kALel~~k 496 (598)
..++.+|.++...|++++|...|.++++..+.
T Consensus 136 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 167 (234)
T TIGR02521 136 RSLENAGLCALKAGDFDKAEKYLTRALQIDPQ 167 (234)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC
Confidence 56666777777777777777777777666543
No 30
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.87 E-value=2.3e-08 Score=108.85 Aligned_cols=134 Identities=22% Similarity=0.182 Sum_probs=115.5
Q ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCcCH
Q 007571 385 QAAALVVKLEGNSLFSAGNISGAASKYSEALALCPMRSKKERVVLYSNRAQCHLLMQQPLAAISDATRALCLHNPLNRHA 464 (598)
Q Consensus 385 ~~~A~~lKeeGN~lfk~GdY~eAIe~YskALel~P~~~~~~~a~ly~NRA~cylKLgdyeeAI~D~~kALeLdP~~~~~~ 464 (598)
...+..+.-.|.-+|-.|++..|-+.+.++|.++|.. ..+|.-||.+|...++-.+-.+++++|..+||. ++
T Consensus 323 e~~A~al~~~gtF~fL~g~~~~a~~d~~~~I~l~~~~-----~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~---n~ 394 (606)
T KOG0547|consen 323 EYMAEALLLRGTFHFLKGDSLGAQEDFDAAIKLDPAF-----NSLYIKRAAAYADENQSEKMWKDFNKAEDLDPE---NP 394 (606)
T ss_pred HHHHHHHHHhhhhhhhcCCchhhhhhHHHHHhcCccc-----chHHHHHHHHHhhhhccHHHHHHHHHHHhcCCC---CC
Confidence 4568899999999999999999999999999999998 788999999999999999999999999999999 99
Q ss_pred HHHHHHHHHHHHhhcHHHHHHHHHHHHHHhccCCCCchhhccCChHHHHHHH-----HHHHHHHHHHHHHHHHhcCCC
Q 007571 465 KSLWRRAQAYDMLALAKESLLDAILFINECSQSNDPDLSLRQNKVPDYAERL-----VKKQMRAAWLFREAAIKHGGV 537 (598)
Q Consensus 465 KAyyRRAqAy~~LGdy~EAl~d~~kALel~~k~~d~~~~~r~~Ki~~~ierl-----L~Kqk~a~~~f~eA~~k~~~i 537 (598)
..||.|||.+.-+++|++|+.||++++.+.|.+. -.+++.. ..+......-|.+++++||..
T Consensus 395 dvYyHRgQm~flL~q~e~A~aDF~Kai~L~pe~~-----------~~~iQl~~a~Yr~~k~~~~m~~Fee~kkkFP~~ 461 (606)
T KOG0547|consen 395 DVYYHRGQMRFLLQQYEEAIADFQKAISLDPENA-----------YAYIQLCCALYRQHKIAESMKTFEEAKKKFPNC 461 (606)
T ss_pred chhHhHHHHHHHHHHHHHHHHHHHHHhhcChhhh-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCC
Confidence 9999999999999999999999999999988632 1122211 124444556688999998853
No 31
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=98.87 E-value=1.4e-09 Score=114.16 Aligned_cols=105 Identities=25% Similarity=0.258 Sum_probs=100.2
Q ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCcC
Q 007571 384 KQAAALVVKLEGNSLFSAGNISGAASKYSEALALCPMRSKKERVVLYSNRAQCHLLMQQPLAAISDATRALCLHNPLNRH 463 (598)
Q Consensus 384 ~~~~A~~lKeeGN~lfk~GdY~eAIe~YskALel~P~~~~~~~a~ly~NRA~cylKLgdyeeAI~D~~kALeLdP~~~~~ 463 (598)
..+++...+-++...+..|+++.||+.|+.||.+.|.. +.+|.+|+.++++++++..||.||..|++++|+ .
T Consensus 110 ~~eqa~e~k~~A~eAln~G~~~~ai~~~t~ai~lnp~~-----a~l~~kr~sv~lkl~kp~~airD~d~A~ein~D---s 181 (377)
T KOG1308|consen 110 MMDQANDKKVQASEALNDGEFDTAIELFTSAIELNPPL-----AILYAKRASVFLKLKKPNAAIRDCDFAIEINPD---S 181 (377)
T ss_pred HHHHHHHHHHHHHHHhcCcchhhhhcccccccccCCch-----hhhcccccceeeeccCCchhhhhhhhhhccCcc---c
Confidence 46788899999999999999999999999999999998 999999999999999999999999999999999 9
Q ss_pred HHHHHHHHHHHHHhhcHHHHHHHHHHHHHHhcc
Q 007571 464 AKSLWRRAQAYDMLALAKESLLDAILFINECSQ 496 (598)
Q Consensus 464 ~KAyyRRAqAy~~LGdy~EAl~d~~kALel~~k 496 (598)
.+.|--|+.|...+|++.+|..|+..+.++.-+
T Consensus 182 a~~ykfrg~A~rllg~~e~aa~dl~~a~kld~d 214 (377)
T KOG1308|consen 182 AKGYKFRGYAERLLGNWEEAAHDLALACKLDYD 214 (377)
T ss_pred ccccchhhHHHHHhhchHHHHHHHHHHHhcccc
Confidence 999999999999999999999999999988543
No 32
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=98.83 E-value=8.7e-08 Score=90.93 Aligned_cols=105 Identities=17% Similarity=-0.016 Sum_probs=91.4
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCcCHH
Q 007571 386 AAALVVKLEGNSLFSAGNISGAASKYSEALALCPMRSKKERVVLYSNRAQCHLLMQQPLAAISDATRALCLHNPLNRHAK 465 (598)
Q Consensus 386 ~~A~~lKeeGN~lfk~GdY~eAIe~YskALel~P~~~~~~~a~ly~NRA~cylKLgdyeeAI~D~~kALeLdP~~~~~~K 465 (598)
..+..+...|..++..|+|++|+..|.+|+.+.|.. ...+.++.|+|.+|.++|++++|+..+.+|+.++|. +..
T Consensus 33 ~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~--~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~---~~~ 107 (168)
T CHL00033 33 KEAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDP--YDRSYILYNIGLIHTSNGEHTKALEYYFQALERNPF---LPQ 107 (168)
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccc--hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC---cHH
Confidence 468889999999999999999999999999997753 223679999999999999999999999999999999 888
Q ss_pred HHHHHHHHHH-------HhhcHHHHHHHHHHHHHHhc
Q 007571 466 SLWRRAQAYD-------MLALAKESLLDAILFINECS 495 (598)
Q Consensus 466 AyyRRAqAy~-------~LGdy~EAl~d~~kALel~~ 495 (598)
++..+|.++. .+|++++|+.++.+++....
T Consensus 108 ~~~~la~i~~~~~~~~~~~g~~~~A~~~~~~a~~~~~ 144 (168)
T CHL00033 108 ALNNMAVICHYRGEQAIEQGDSEIAEAWFDQAAEYWK 144 (168)
T ss_pred HHHHHHHHHHHhhHHHHHcccHHHHHHHHHHHHHHHH
Confidence 8888888888 88888877777777765543
No 33
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=98.83 E-value=1.4e-08 Score=112.82 Aligned_cols=114 Identities=21% Similarity=0.101 Sum_probs=103.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCC
Q 007571 379 EDLHIKQAAALVVKLEGNSLFSAGNISGAASKYSEALALCPMRSKKERVVLYSNRAQCHLLMQQPLAAISDATRALCLHN 458 (598)
Q Consensus 379 eElee~~~~A~~lKeeGN~lfk~GdY~eAIe~YskALel~P~~~~~~~a~ly~NRA~cylKLgdyeeAI~D~~kALeLdP 458 (598)
..++....-+....+.|-.+-++|++++|+.+|.+||.+.|.. +.+|+|+|.+|-.+|+...|+++|++||.++|
T Consensus 379 ~al~v~p~~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI~P~f-----Ada~~NmGnt~ke~g~v~~A~q~y~rAI~~nP 453 (966)
T KOG4626|consen 379 KALEVFPEFAAAHNNLASIYKQQGNLDDAIMCYKEALRIKPTF-----ADALSNMGNTYKEMGDVSAAIQCYTRAIQINP 453 (966)
T ss_pred HHHhhChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHhcCchH-----HHHHHhcchHHHHhhhHHHHHHHHHHHHhcCc
Confidence 3444556778888899999999999999999999999999998 99999999999999999999999999999999
Q ss_pred CCCcCHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHhccCCCC
Q 007571 459 PLNRHAKSLWRRAQAYDMLALAKESLLDAILFINECSQSNDP 500 (598)
Q Consensus 459 ~~~~~~KAyyRRAqAy~~LGdy~EAl~d~~kALel~~k~~d~ 500 (598)
. ...|+-++|.+|...|+..+|+..|+.+|++.|+..++
T Consensus 454 t---~AeAhsNLasi~kDsGni~~AI~sY~~aLklkPDfpdA 492 (966)
T KOG4626|consen 454 T---FAEAHSNLASIYKDSGNIPEAIQSYRTALKLKPDFPDA 492 (966)
T ss_pred H---HHHHHhhHHHHhhccCCcHHHHHHHHHHHccCCCCchh
Confidence 9 99999999999999999999999999999998876554
No 34
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=98.82 E-value=8.4e-08 Score=91.62 Aligned_cols=92 Identities=23% Similarity=0.149 Sum_probs=82.8
Q ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCcC
Q 007571 384 KQAAALVVKLEGNSLFSAGNISGAASKYSEALALCPMRSKKERVVLYSNRAQCHLLMQQPLAAISDATRALCLHNPLNRH 463 (598)
Q Consensus 384 ~~~~A~~lKeeGN~lfk~GdY~eAIe~YskALel~P~~~~~~~a~ly~NRA~cylKLgdyeeAI~D~~kALeLdP~~~~~ 463 (598)
+...+..+...|..++..|+|++|+..|.+++...|.. .....++.|+|.+|.++|+|++|+..+.+++.++|. +
T Consensus 31 ~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~--~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~---~ 105 (172)
T PRK02603 31 KAKEAFVYYRDGMSAQADGEYAEALENYEEALKLEEDP--NDRSYILYNMGIIYASNGEHDKALEYYHQALELNPK---Q 105 (172)
T ss_pred HhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcc--chHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc---c
Confidence 35678889999999999999999999999999987764 123678999999999999999999999999999999 9
Q ss_pred HHHHHHHHHHHHHhhcH
Q 007571 464 AKSLWRRAQAYDMLALA 480 (598)
Q Consensus 464 ~KAyyRRAqAy~~LGdy 480 (598)
..+++.+|.++..+|+.
T Consensus 106 ~~~~~~lg~~~~~~g~~ 122 (172)
T PRK02603 106 PSALNNIAVIYHKRGEK 122 (172)
T ss_pred HHHHHHHHHHHHHcCCh
Confidence 99999999999998873
No 35
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=98.79 E-value=1.2e-07 Score=113.45 Aligned_cols=103 Identities=15% Similarity=-0.029 Sum_probs=98.4
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCcCHHHH
Q 007571 388 ALVVKLEGNSLFSAGNISGAASKYSEALALCPMRSKKERVVLYSNRAQCHLLMQQPLAAISDATRALCLHNPLNRHAKSL 467 (598)
Q Consensus 388 A~~lKeeGN~lfk~GdY~eAIe~YskALel~P~~~~~~~a~ly~NRA~cylKLgdyeeAI~D~~kALeLdP~~~~~~KAy 467 (598)
+..+...|..+.+.|++++|+..|.+|+.++|++ +.++.|+|.++..+|++++|+..+++|++++|+ ++.++
T Consensus 609 ~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd~-----~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P~---~~~a~ 680 (987)
T PRK09782 609 ANAYVARATIYRQRHNVPAAVSDLRAALELEPNN-----SNYQAALGYALWDSGDIAQSREMLERAHKGLPD---DPALI 680 (987)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC-----HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC---CHHHH
Confidence 4567889999999999999999999999999999 999999999999999999999999999999999 99999
Q ss_pred HHHHHHHHHhhcHHHHHHHHHHHHHHhccCC
Q 007571 468 WRRAQAYDMLALAKESLLDAILFINECSQSN 498 (598)
Q Consensus 468 yRRAqAy~~LGdy~EAl~d~~kALel~~k~~ 498 (598)
+.+|.++..+|++++|+..|++++++.|++.
T Consensus 681 ~nLA~al~~lGd~~eA~~~l~~Al~l~P~~a 711 (987)
T PRK09782 681 RQLAYVNQRLDDMAATQHYARLVIDDIDNQA 711 (987)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHhcCCCCc
Confidence 9999999999999999999999999988743
No 36
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.74 E-value=7.6e-08 Score=90.07 Aligned_cols=85 Identities=16% Similarity=0.024 Sum_probs=80.5
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCcCHH
Q 007571 386 AAALVVKLEGNSLFSAGNISGAASKYSEALALCPMRSKKERVVLYSNRAQCHLLMQQPLAAISDATRALCLHNPLNRHAK 465 (598)
Q Consensus 386 ~~A~~lKeeGN~lfk~GdY~eAIe~YskALel~P~~~~~~~a~ly~NRA~cylKLgdyeeAI~D~~kALeLdP~~~~~~K 465 (598)
.....+...|..+...|+|++|+..|.+|+.++|.+ +..+.|+|.|+..+|++++|+..+.+|++++|+ ++.
T Consensus 56 ~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p~~-----~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~p~---~~~ 127 (144)
T PRK15359 56 WSWRAHIALAGTWMMLKEYTTAINFYGHALMLDASH-----PEPVYQTGVCLKMMGEPGLAREAFQTAIKMSYA---DAS 127 (144)
T ss_pred CcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCC-----cHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC---ChH
Confidence 357778999999999999999999999999999999 999999999999999999999999999999999 999
Q ss_pred HHHHHHHHHHHhh
Q 007571 466 SLWRRAQAYDMLA 478 (598)
Q Consensus 466 AyyRRAqAy~~LG 478 (598)
.+..+|.+...++
T Consensus 128 ~~~~~~~~~~~l~ 140 (144)
T PRK15359 128 WSEIRQNAQIMVD 140 (144)
T ss_pred HHHHHHHHHHHHH
Confidence 9999999988765
No 37
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=98.73 E-value=3.6e-07 Score=86.37 Aligned_cols=103 Identities=18% Similarity=0.121 Sum_probs=88.8
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCcCHHH
Q 007571 387 AALVVKLEGNSLFSAGNISGAASKYSEALALCPMRSKKERVVLYSNRAQCHLLMQQPLAAISDATRALCLHNPLNRHAKS 466 (598)
Q Consensus 387 ~A~~lKeeGN~lfk~GdY~eAIe~YskALel~P~~~~~~~a~ly~NRA~cylKLgdyeeAI~D~~kALeLdP~~~~~~KA 466 (598)
....+...|..++..|+|++|+..|.+++...+.. .....+.++|.++..+|++++|+..+.+++..+|+ +..+
T Consensus 98 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~---~~~~ 171 (234)
T TIGR02521 98 NGDVLNNYGTFLCQQGKYEQAMQQFEQAIEDPLYP---QPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQ---RPES 171 (234)
T ss_pred CHHHHHHHHHHHHHcccHHHHHHHHHHHHhccccc---cchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC---ChHH
Confidence 34567778999999999999999999999854211 12677899999999999999999999999999999 8999
Q ss_pred HHHHHHHHHHhhcHHHHHHHHHHHHHHhc
Q 007571 467 LWRRAQAYDMLALAKESLLDAILFINECS 495 (598)
Q Consensus 467 yyRRAqAy~~LGdy~EAl~d~~kALel~~ 495 (598)
++.+|.++...|++++|+..++++++..+
T Consensus 172 ~~~la~~~~~~~~~~~A~~~~~~~~~~~~ 200 (234)
T TIGR02521 172 LLELAELYYLRGQYKDARAYLERYQQTYN 200 (234)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 99999999999999999999999998843
No 38
>PRK12370 invasion protein regulator; Provisional
Probab=98.71 E-value=2.5e-07 Score=104.22 Aligned_cols=100 Identities=10% Similarity=-0.049 Sum_probs=89.6
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCcCHHH
Q 007571 387 AALVVKLEGNSLFSAGNISGAASKYSEALALCPMRSKKERVVLYSNRAQCHLLMQQPLAAISDATRALCLHNPLNRHAKS 466 (598)
Q Consensus 387 ~A~~lKeeGN~lfk~GdY~eAIe~YskALel~P~~~~~~~a~ly~NRA~cylKLgdyeeAI~D~~kALeLdP~~~~~~KA 466 (598)
.+..+...|..+...|++++|+..|.+|++++|++ +.+|.++|.++..+|++++|+..+++|++++|. ++.+
T Consensus 337 ~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~-----~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~---~~~~ 408 (553)
T PRK12370 337 NPQALGLLGLINTIHSEYIVGSLLFKQANLLSPIS-----ADIKYYYGWNLFMAGQLEEALQTINECLKLDPT---RAAA 408 (553)
T ss_pred CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC-----HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC---Chhh
Confidence 35556778889999999999999999999999998 889999999999999999999999999999999 8888
Q ss_pred HHHHHHHHHHhhcHHHHHHHHHHHHHHh
Q 007571 467 LWRRAQAYDMLALAKESLLDAILFINEC 494 (598)
Q Consensus 467 yyRRAqAy~~LGdy~EAl~d~~kALel~ 494 (598)
++.++.+++..|++++|+..++++++..
T Consensus 409 ~~~~~~~~~~~g~~eeA~~~~~~~l~~~ 436 (553)
T PRK12370 409 GITKLWITYYHTGIDDAIRLGDELRSQH 436 (553)
T ss_pred HHHHHHHHHhccCHHHHHHHHHHHHHhc
Confidence 7778888888999999999999988775
No 39
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.70 E-value=2.4e-07 Score=91.62 Aligned_cols=106 Identities=17% Similarity=0.116 Sum_probs=95.8
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCcCHH-
Q 007571 387 AALVVKLEGNSLFSAGNISGAASKYSEALALCPMRSKKERVVLYSNRAQCHLLMQQPLAAISDATRALCLHNPLNRHAK- 465 (598)
Q Consensus 387 ~A~~lKeeGN~lfk~GdY~eAIe~YskALel~P~~~~~~~a~ly~NRA~cylKLgdyeeAI~D~~kALeLdP~~~~~~K- 465 (598)
.+..+...|..+++.|+|+.|+..|.+++...|.+ .....++.++|.+|+.+|++++|+..+.++++..|+ ++.
T Consensus 32 ~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~--~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~---~~~~ 106 (235)
T TIGR03302 32 PAEELYEEAKEALDSGDYTEAIKYFEALESRYPFS--PYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPN---HPDA 106 (235)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc--hhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcC---CCch
Confidence 56788999999999999999999999999999976 223467899999999999999999999999999998 554
Q ss_pred --HHHHHHHHHHHh--------hcHHHHHHHHHHHHHHhccC
Q 007571 466 --SLWRRAQAYDML--------ALAKESLLDAILFINECSQS 497 (598)
Q Consensus 466 --AyyRRAqAy~~L--------Gdy~EAl~d~~kALel~~k~ 497 (598)
+++.+|.++..+ |++++|+..|+++++..|++
T Consensus 107 ~~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~ 148 (235)
T TIGR03302 107 DYAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPNS 148 (235)
T ss_pred HHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCCC
Confidence 899999999987 89999999999999998874
No 40
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=98.68 E-value=7.7e-07 Score=93.98 Aligned_cols=171 Identities=19% Similarity=0.149 Sum_probs=127.1
Q ss_pred CcchhHHhhhhhhhhhhhHhhhcccccCCccceehhhccccccccCCCC---CCCCccHHHHHHHHHHHhHhhHHhh-cC
Q 007571 301 PSTCHKVIDKAVPTLIDLAEITNLGDHKKLGDSIVNVLQDCIQLQGTVR---SSPSNRSKEQIEELLNSRQRLKWEK-NM 376 (598)
Q Consensus 301 ~~t~~kvld~a~~~lvDl~eL~~Lg~~~k~GE~~~~~L~pdy~~g~~g~---~ip~~~tl~~~~ELl~~kek~k~e~-~m 376 (598)
+.|.|-.+.+.-+.++|+.. .+.++|||.-....+ ..........+ -+|+...+.+. .-
T Consensus 78 RaT~yLAmGksk~al~Dl~r--------------VlelKpDF~~ARiQRg~vllK~Gele~A~---~DF~~vl~~~~s~~ 140 (504)
T KOG0624|consen 78 RATVYLAMGKSKAALQDLSR--------------VLELKPDFMAARIQRGVVLLKQGELEQAE---ADFDQVLQHEPSNG 140 (504)
T ss_pred HHHHHhhhcCCccchhhHHH--------------HHhcCccHHHHHHHhchhhhhcccHHHHH---HHHHHHHhcCCCcc
Confidence 55666666777777888763 346678876655443 22222222222 22322111111 00
Q ss_pred ChHHHHH---HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 007571 377 LKEDLHI---KQAAALVVKLEGNSLFSAGNISGAASKYSEALALCPMRSKKERVVLYSNRAQCHLLMQQPLAAISDATRA 453 (598)
Q Consensus 377 s~eElee---~~~~A~~lKeeGN~lfk~GdY~eAIe~YskALel~P~~~~~~~a~ly~NRA~cylKLgdyeeAI~D~~kA 453 (598)
+..|..+ .+..-..+.++...++..|++..||+..++.|+++|-+ +.+|--||.||...|+...||.|...|
T Consensus 141 ~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~~Wd-----a~l~~~Rakc~i~~~e~k~AI~Dlk~a 215 (504)
T KOG0624|consen 141 LVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEIQPWD-----ASLRQARAKCYIAEGEPKKAIHDLKQA 215 (504)
T ss_pred hhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhcCcch-----hHHHHHHHHHHHhcCcHHHHHHHHHHH
Confidence 1112222 23444567778888999999999999999999999999 999999999999999999999999999
Q ss_pred HHhCCCCCcCHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHhcc
Q 007571 454 LCLHNPLNRHAKSLWRRAQAYDMLALAKESLLDAILFINECSQ 496 (598)
Q Consensus 454 LeLdP~~~~~~KAyyRRAqAy~~LGdy~EAl~d~~kALel~~k 496 (598)
-+|..+ +..++|..++.++.+|+.+.++...+.+|++.|+
T Consensus 216 skLs~D---nTe~~ykis~L~Y~vgd~~~sL~~iRECLKldpd 255 (504)
T KOG0624|consen 216 SKLSQD---NTEGHYKISQLLYTVGDAENSLKEIRECLKLDPD 255 (504)
T ss_pred Hhcccc---chHHHHHHHHHHHhhhhHHHHHHHHHHHHccCcc
Confidence 999999 9999999999999999999999999999999875
No 41
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.67 E-value=9.5e-08 Score=105.80 Aligned_cols=102 Identities=19% Similarity=0.103 Sum_probs=96.5
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCcCHHHHH
Q 007571 389 LVVKLEGNSLFSAGNISGAASKYSEALALCPMRSKKERVVLYSNRAQCHLLMQQPLAAISDATRALCLHNPLNRHAKSLW 468 (598)
Q Consensus 389 ~~lKeeGN~lfk~GdY~eAIe~YskALel~P~~~~~~~a~ly~NRA~cylKLgdyeeAI~D~~kALeLdP~~~~~~KAyy 468 (598)
......|-.++-.|+|++|+.+|+.||...|++ ..+|+.+|+++-.-.+..+||+.|++||+|.|+ ++++.|
T Consensus 431 dvQ~~LGVLy~ls~efdraiDcf~~AL~v~Pnd-----~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~---yVR~Ry 502 (579)
T KOG1125|consen 431 DVQSGLGVLYNLSGEFDRAVDCFEAALQVKPND-----YLLWNRLGATLANGNRSEEAISAYNRALQLQPG---YVRVRY 502 (579)
T ss_pred hHHhhhHHHHhcchHHHHHHHHHHHHHhcCCch-----HHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCC---eeeeeh
Confidence 345567889999999999999999999999999 999999999999999999999999999999999 999999
Q ss_pred HHHHHHHHhhcHHHHHHHHHHHHHHhccCC
Q 007571 469 RRAQAYDMLALAKESLLDAILFINECSQSN 498 (598)
Q Consensus 469 RRAqAy~~LGdy~EAl~d~~kALel~~k~~ 498 (598)
++|.+++.+|.|++|+..|..||.+-.++.
T Consensus 503 NlgIS~mNlG~ykEA~~hlL~AL~mq~ks~ 532 (579)
T KOG1125|consen 503 NLGISCMNLGAYKEAVKHLLEALSMQRKSR 532 (579)
T ss_pred hhhhhhhhhhhHHHHHHHHHHHHHhhhccc
Confidence 999999999999999999999999988754
No 42
>PRK15331 chaperone protein SicA; Provisional
Probab=98.64 E-value=3.3e-07 Score=88.33 Aligned_cols=99 Identities=11% Similarity=-0.039 Sum_probs=94.2
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCcCHHH
Q 007571 387 AALVVKLEGNSLFSAGNISGAASKYSEALALCPMRSKKERVVLYSNRAQCHLLMQQPLAAISDATRALCLHNPLNRHAKS 466 (598)
Q Consensus 387 ~A~~lKeeGN~lfk~GdY~eAIe~YskALel~P~~~~~~~a~ly~NRA~cylKLgdyeeAI~D~~kALeLdP~~~~~~KA 466 (598)
.-+.+...|-.+|.+|+|++|...|.-...++|.+ ...+..+|.|+..+++|++|+..|..|..++++ ++..
T Consensus 36 ~le~iY~~Ay~~y~~Gk~~eA~~~F~~L~~~d~~n-----~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~---dp~p 107 (165)
T PRK15331 36 MMDGLYAHAYEFYNQGRLDEAETFFRFLCIYDFYN-----PDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKN---DYRP 107 (165)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCc-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccC---CCCc
Confidence 45678889999999999999999999999999998 889999999999999999999999999999999 9999
Q ss_pred HHHHHHHHHHhhcHHHHHHHHHHHHHH
Q 007571 467 LWRRAQAYDMLALAKESLLDAILFINE 493 (598)
Q Consensus 467 yyRRAqAy~~LGdy~EAl~d~~kALel 493 (598)
+|+.|+||+.+|+.+.|+..|..+++.
T Consensus 108 ~f~agqC~l~l~~~~~A~~~f~~a~~~ 134 (165)
T PRK15331 108 VFFTGQCQLLMRKAAKARQCFELVNER 134 (165)
T ss_pred cchHHHHHHHhCCHHHHHHHHHHHHhC
Confidence 999999999999999999999999984
No 43
>PLN02789 farnesyltranstransferase
Probab=98.64 E-value=4.3e-07 Score=96.23 Aligned_cols=134 Identities=10% Similarity=0.058 Sum_probs=109.4
Q ss_pred HHHHHHHHHHhHhhHHhhcCChHHHHHHHHHHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHH
Q 007571 357 KEQIEELLNSRQRLKWEKNMLKEDLHIKQAAALVVKLEGNSLFSAG-NISGAASKYSEALALCPMRSKKERVVLYSNRAQ 435 (598)
Q Consensus 357 l~~~~ELl~~kek~k~e~~ms~eElee~~~~A~~lKeeGN~lfk~G-dY~eAIe~YskALel~P~~~~~~~a~ly~NRA~ 435 (598)
..+...++...++......++.+-++...+....+..+|..+.+.| ++++|+..++++++.+|.+ ..+|.+|+.
T Consensus 40 ~~~~ra~l~~~e~serAL~lt~~aI~lnP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npkn-----yqaW~~R~~ 114 (320)
T PLN02789 40 MDYFRAVYASDERSPRALDLTADVIRLNPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPKN-----YQIWHHRRW 114 (320)
T ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCcc-----hHHhHHHHH
Confidence 3344444433333333333344445455667788889999999998 6899999999999999999 899999999
Q ss_pred HHHHcCCh--HHHHHHHHHHHHhCCCCCcCHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHhccCC
Q 007571 436 CHLLMQQP--LAAISDATRALCLHNPLNRHAKSLWRRAQAYDMLALAKESLLDAILFINECSQSN 498 (598)
Q Consensus 436 cylKLgdy--eeAI~D~~kALeLdP~~~~~~KAyyRRAqAy~~LGdy~EAl~d~~kALel~~k~~ 498 (598)
++.+++++ ++++..++++|+++|. |..++..|+.++..+|++++|+..+.++|+..+.+.
T Consensus 115 ~l~~l~~~~~~~el~~~~kal~~dpk---Ny~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~N~ 176 (320)
T PLN02789 115 LAEKLGPDAANKELEFTRKILSLDAK---NYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVRNN 176 (320)
T ss_pred HHHHcCchhhHHHHHHHHHHHHhCcc---cHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCch
Confidence 99999974 7889999999999999 999999999999999999999999999999987643
No 44
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.62 E-value=3.2e-08 Score=106.06 Aligned_cols=96 Identities=25% Similarity=0.309 Sum_probs=91.0
Q ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCcCH
Q 007571 385 QAAALVVKLEGNSLFSAGNISGAASKYSEALALCPMRSKKERVVLYSNRAQCHLLMQQPLAAISDATRALCLHNPLNRHA 464 (598)
Q Consensus 385 ~~~A~~lKeeGN~lfk~GdY~eAIe~YskALel~P~~~~~~~a~ly~NRA~cylKLgdyeeAI~D~~kALeLdP~~~~~~ 464 (598)
-..++..+++||.++++.+|..|+..|+.||+.+|.+ +..|.|||.+++.+++|++|+-|+++.++++|. .+
T Consensus 46 ~~~Ae~~k~~gn~~yk~k~Y~nal~~yt~Ai~~~pd~-----a~yy~nRAa~~m~~~~~~~a~~dar~~~r~kd~---~~ 117 (486)
T KOG0550|consen 46 AQQAEEAKEEGNAFYKQKTYGNALKNYTFAIDMCPDN-----ASYYSNRAATLMMLGRFEEALGDARQSVRLKDG---FS 117 (486)
T ss_pred HHHHHHHHhhcchHHHHhhHHHHHHHHHHHHHhCccc-----hhhhchhHHHHHHHHhHhhcccchhhheecCCC---cc
Confidence 4579999999999999999999999999999999998 999999999999999999999999999999999 99
Q ss_pred HHHHHHHHHHHHhhcHHHHHHHHH
Q 007571 465 KSLWRRAQAYDMLALAKESLLDAI 488 (598)
Q Consensus 465 KAyyRRAqAy~~LGdy~EAl~d~~ 488 (598)
|++.|.++++..+++..+|-..++
T Consensus 118 k~~~r~~~c~~a~~~~i~A~~~~~ 141 (486)
T KOG0550|consen 118 KGQLREGQCHLALSDLIEAEEKLK 141 (486)
T ss_pred ccccchhhhhhhhHHHHHHHHHhh
Confidence 999999999999999988875554
No 45
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=98.59 E-value=5.9e-07 Score=100.88 Aligned_cols=130 Identities=12% Similarity=0.046 Sum_probs=111.4
Q ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCcCH
Q 007571 385 QAAALVVKLEGNSLFSAGNISGAASKYSEALALCPMRSKKERVVLYSNRAQCHLLMQQPLAAISDATRALCLHNPLNRHA 464 (598)
Q Consensus 385 ~~~A~~lKeeGN~lfk~GdY~eAIe~YskALel~P~~~~~~~a~ly~NRA~cylKLgdyeeAI~D~~kALeLdP~~~~~~ 464 (598)
...-.++.-.|..+.|+++|+.|.-.|.+|++++|.+ .++..-.+..+.++|+.++|+..+++|+.+||. ++
T Consensus 486 ~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~INP~n-----svi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~k---n~ 557 (638)
T KOG1126|consen 486 PRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEINPSN-----SVILCHIGRIQHQLKRKDKALQLYEKAIHLDPK---NP 557 (638)
T ss_pred chhhHHHHhhhhheeccchhhHHHHHHHhhhcCCccc-----hhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCC---Cc
Confidence 3467889999999999999999999999999999999 899999999999999999999999999999999 99
Q ss_pred HHHHHHHHHHHHhhcHHHHHHHHHHHHHHhccCCCCchhhccCChHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 007571 465 KSLWRRAQAYDMLALAKESLLDAILFINECSQSNDPDLSLRQNKVPDYAERLVKKQMRAAWLFREAAIKHG 535 (598)
Q Consensus 465 KAyyRRAqAy~~LGdy~EAl~d~~kALel~~k~~d~~~~~r~~Ki~~~ierlL~Kqk~a~~~f~eA~~k~~ 535 (598)
-.-|.+|..+..+++|++|+..+++.-++.|++. ....+-..+.|++... ..|..+|.
T Consensus 558 l~~~~~~~il~~~~~~~eal~~LEeLk~~vP~es----------~v~~llgki~k~~~~~---~~Al~~f~ 615 (638)
T KOG1126|consen 558 LCKYHRASILFSLGRYVEALQELEELKELVPQES----------SVFALLGKIYKRLGNT---DLALLHFS 615 (638)
T ss_pred hhHHHHHHHHHhhcchHHHHHHHHHHHHhCcchH----------HHHHHHHHHHHHHccc---hHHHHhhH
Confidence 9999999999999999999999999999998733 2333434444444433 45666655
No 46
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=98.59 E-value=1.9e-07 Score=74.68 Aligned_cols=62 Identities=18% Similarity=0.132 Sum_probs=43.8
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC
Q 007571 393 LEGNSLFSAGNISGAASKYSEALALCPMRSKKERVVLYSNRAQCHLLMQQPLAAISDATRALCLHNP 459 (598)
Q Consensus 393 eeGN~lfk~GdY~eAIe~YskALel~P~~~~~~~a~ly~NRA~cylKLgdyeeAI~D~~kALeLdP~ 459 (598)
..|..+++.|+|++|+..|+++++..|.+ ..++..+|.|++.+|++++|+..++++++++|+
T Consensus 2 ~~a~~~~~~g~~~~A~~~~~~~l~~~P~~-----~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~ 63 (65)
T PF13432_consen 2 ALARALYQQGDYDEAIAAFEQALKQDPDN-----PEAWYLLGRILYQQGRYDEALAYYERALELDPD 63 (65)
T ss_dssp HHHHHHHHCTHHHHHHHHHHHHHCCSTTH-----HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred hHHHHHHHcCCHHHHHHHHHHHHHHCCCC-----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcC
Confidence 45666777777777777777777777766 777777777777777777777777777777776
No 47
>PRK12370 invasion protein regulator; Provisional
Probab=98.59 E-value=8.5e-07 Score=99.99 Aligned_cols=89 Identities=10% Similarity=-0.102 Sum_probs=85.3
Q ss_pred cCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCcCHHHHHHHHHHHHHhhcH
Q 007571 401 AGNISGAASKYSEALALCPMRSKKERVVLYSNRAQCHLLMQQPLAAISDATRALCLHNPLNRHAKSLWRRAQAYDMLALA 480 (598)
Q Consensus 401 ~GdY~eAIe~YskALel~P~~~~~~~a~ly~NRA~cylKLgdyeeAI~D~~kALeLdP~~~~~~KAyyRRAqAy~~LGdy 480 (598)
.+++.+|+..+.+|++++|++ +.+|.++|.++..+|++++|+..+++|++++|+ ++.+++.+|.++..+|++
T Consensus 317 ~~~~~~A~~~~~~Al~ldP~~-----~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~---~~~a~~~lg~~l~~~G~~ 388 (553)
T PRK12370 317 QNAMIKAKEHAIKATELDHNN-----PQALGLLGLINTIHSEYIVGSLLFKQANLLSPI---SADIKYYYGWNLFMAGQL 388 (553)
T ss_pred chHHHHHHHHHHHHHhcCCCC-----HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC---CHHHHHHHHHHHHHCCCH
Confidence 456899999999999999999 999999999999999999999999999999999 999999999999999999
Q ss_pred HHHHHHHHHHHHHhccC
Q 007571 481 KESLLDAILFINECSQS 497 (598)
Q Consensus 481 ~EAl~d~~kALel~~k~ 497 (598)
++|+..|++++++.|..
T Consensus 389 ~eAi~~~~~Al~l~P~~ 405 (553)
T PRK12370 389 EEALQTINECLKLDPTR 405 (553)
T ss_pred HHHHHHHHHHHhcCCCC
Confidence 99999999999998863
No 48
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=98.58 E-value=3.8e-06 Score=82.93 Aligned_cols=110 Identities=12% Similarity=0.027 Sum_probs=91.1
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCcCHHH
Q 007571 387 AALVVKLEGNSLFSAGNISGAASKYSEALALCPMRSKKERVVLYSNRAQCHLLMQQPLAAISDATRALCLHNPLNRHAKS 466 (598)
Q Consensus 387 ~A~~lKeeGN~lfk~GdY~eAIe~YskALel~P~~~~~~~a~ly~NRA~cylKLgdyeeAI~D~~kALeLdP~~~~~~KA 466 (598)
.+..+...|..++..|+|.+|+..|++.+...|.. +....+...+|.+|++.|+|.+|+..+++.++..|+......+
T Consensus 4 ~~~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s--~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~~A 81 (203)
T PF13525_consen 4 TAEALYQKALEALQQGDYEEAIKLFEKLIDRYPNS--PYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKADYA 81 (203)
T ss_dssp -HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TTS--TTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHHHH
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCC--hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhhH
Confidence 46789999999999999999999999999999975 4567788899999999999999999999999999984334579
Q ss_pred HHHHHHHHHHhhc-----------HHHHHHHHHHHHHHhccCC
Q 007571 467 LWRRAQAYDMLAL-----------AKESLLDAILFINECSQSN 498 (598)
Q Consensus 467 yyRRAqAy~~LGd-----------y~EAl~d~~kALel~~k~~ 498 (598)
+|.+|.+++.+.. ..+|+..|+..++..|++.
T Consensus 82 ~Y~~g~~~~~~~~~~~~~~~D~~~~~~A~~~~~~li~~yP~S~ 124 (203)
T PF13525_consen 82 LYMLGLSYYKQIPGILRSDRDQTSTRKAIEEFEELIKRYPNSE 124 (203)
T ss_dssp HHHHHHHHHHHHHHHH-TT---HHHHHHHHHHHHHHHH-TTST
T ss_pred HHHHHHHHHHhCccchhcccChHHHHHHHHHHHHHHHHCcCch
Confidence 9999999877643 4589999999999999744
No 49
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=98.58 E-value=1.4e-07 Score=103.64 Aligned_cols=104 Identities=27% Similarity=0.260 Sum_probs=96.6
Q ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHHHcC---ChHHHHHHHHHHHHhCCCCC
Q 007571 385 QAAALVVKLEGNSLFSAGNISGAASKYSEALALCPMRSKKERVVLYSNRAQCHLLMQ---QPLAAISDATRALCLHNPLN 461 (598)
Q Consensus 385 ~~~A~~lKeeGN~lfk~GdY~eAIe~YskALel~P~~~~~~~a~ly~NRA~cylKLg---dyeeAI~D~~kALeLdP~~~ 461 (598)
.+.++..+++||..|-.+....||..|++++...|.. ..+|.|||.+++|.+ +--.|+.||..|++++|.
T Consensus 371 ~e~ie~~~~egnd~ly~~~~~~~i~~~s~a~q~~~~~-----~~~l~nraa~lmkRkW~~d~~~AlrDch~Alrln~s-- 443 (758)
T KOG1310|consen 371 PENIEKFKTEGNDGLYESIVSGAISHYSRAIQYVPDA-----IYLLENRAAALMKRKWRGDSYLALRDCHVALRLNPS-- 443 (758)
T ss_pred hHHHHHHHhhccchhhhHHHHHHHHHHHHHhhhccch-----hHHHHhHHHHHHhhhccccHHHHHHhHHhhccCChH--
Confidence 4578899999999999999999999999999999998 999999999999864 778899999999999999
Q ss_pred cCHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHhcc
Q 007571 462 RHAKSLWRRAQAYDMLALAKESLLDAILFINECSQ 496 (598)
Q Consensus 462 ~~~KAyyRRAqAy~~LGdy~EAl~d~~kALel~~k 496 (598)
..||+|+++.|+..++++.+|+.+...+....|.
T Consensus 444 -~~kah~~la~aL~el~r~~eal~~~~alq~~~Pt 477 (758)
T KOG1310|consen 444 -IQKAHFRLARALNELTRYLEALSCHWALQMSFPT 477 (758)
T ss_pred -HHHHHHHHHHHHHHHhhHHHhhhhHHHHhhcCch
Confidence 9999999999999999999999988887777773
No 50
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=98.57 E-value=1.6e-06 Score=89.62 Aligned_cols=106 Identities=7% Similarity=-0.115 Sum_probs=93.6
Q ss_pred HHHHHHHHH-HHcCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCcCHHHHH
Q 007571 390 VVKLEGNSL-FSAGNISGAASKYSEALALCPMRSKKERVVLYSNRAQCHLLMQQPLAAISDATRALCLHNPLNRHAKSLW 468 (598)
Q Consensus 390 ~lKeeGN~l-fk~GdY~eAIe~YskALel~P~~~~~~~a~ly~NRA~cylKLgdyeeAI~D~~kALeLdP~~~~~~KAyy 468 (598)
...+.+..+ ++.|+|++|+..|.+.++..|+. ...+.+++-+|.+|+..|+|++|+..+.+++...|+....+.+++
T Consensus 144 ~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s--~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~ 221 (263)
T PRK10803 144 TDYNAAIALVQDKSRQDDAIVAFQNFVKKYPDS--TYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMF 221 (263)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCC--cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHH
Confidence 345566655 67899999999999999999986 334578899999999999999999999999999998555789999
Q ss_pred HHHHHHHHhhcHHHHHHHHHHHHHHhccC
Q 007571 469 RRAQAYDMLALAKESLLDAILFINECSQS 497 (598)
Q Consensus 469 RRAqAy~~LGdy~EAl~d~~kALel~~k~ 497 (598)
.+|.++..+|++++|+..|+++++..|++
T Consensus 222 klg~~~~~~g~~~~A~~~~~~vi~~yP~s 250 (263)
T PRK10803 222 KVGVIMQDKGDTAKAKAVYQQVIKKYPGT 250 (263)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHCcCC
Confidence 99999999999999999999999999873
No 51
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=98.54 E-value=9.7e-07 Score=89.06 Aligned_cols=100 Identities=15% Similarity=0.026 Sum_probs=89.8
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCcCHH
Q 007571 386 AAALVVKLEGNSLFSAGNISGAASKYSEALALCPMRSKKERVVLYSNRAQCHLLMQQPLAAISDATRALCLHNPLNRHAK 465 (598)
Q Consensus 386 ~~A~~lKeeGN~lfk~GdY~eAIe~YskALel~P~~~~~~~a~ly~NRA~cylKLgdyeeAI~D~~kALeLdP~~~~~~K 465 (598)
..+....+.|..++..|++..|.....+||+.+|++ ..+|.-||..|.++|+.+.|-+.|++|+.++|+ +..
T Consensus 33 ~aa~arlqLal~YL~~gd~~~A~~nlekAL~~DPs~-----~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~---~Gd 104 (250)
T COG3063 33 EAAKARLQLALGYLQQGDYAQAKKNLEKALEHDPSY-----YLAHLVRAHYYQKLGENDLADESYRKALSLAPN---NGD 104 (250)
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccc-----HHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCC---ccc
Confidence 457778889999999999999999999999999998 899999999999999999999999999999999 888
Q ss_pred HHHHHHHHHHHhhcHHHHHHHHHHHHHH
Q 007571 466 SLWRRAQAYDMLALAKESLLDAILFINE 493 (598)
Q Consensus 466 AyyRRAqAy~~LGdy~EAl~d~~kALel 493 (598)
.+.+-|--++..|+|++|...|.+|+..
T Consensus 105 VLNNYG~FLC~qg~~~eA~q~F~~Al~~ 132 (250)
T COG3063 105 VLNNYGAFLCAQGRPEEAMQQFERALAD 132 (250)
T ss_pred hhhhhhHHHHhCCChHHHHHHHHHHHhC
Confidence 8888888888888888888888888865
No 52
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=98.52 E-value=5.9e-06 Score=84.29 Aligned_cols=109 Identities=12% Similarity=0.018 Sum_probs=94.1
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCcCHHHH
Q 007571 388 ALVVKLEGNSLFSAGNISGAASKYSEALALCPMRSKKERVVLYSNRAQCHLLMQQPLAAISDATRALCLHNPLNRHAKSL 467 (598)
Q Consensus 388 A~~lKeeGN~lfk~GdY~eAIe~YskALel~P~~~~~~~a~ly~NRA~cylKLgdyeeAI~D~~kALeLdP~~~~~~KAy 467 (598)
+..+..+|..++++|+|++|++.|.+.+...|.. .....+..++|.+|+++++|++|+..+++.+++.|+......++
T Consensus 32 ~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s--~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~ 109 (243)
T PRK10866 32 PSEIYATAQQKLQDGNWKQAITQLEALDNRYPFG--PYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVL 109 (243)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC--hHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHH
Confidence 4557889999999999999999999999999986 45566678999999999999999999999999999844356899
Q ss_pred HHHHHHHHHhhc------------------HHHHHHHHHHHHHHhccCC
Q 007571 468 WRRAQAYDMLAL------------------AKESLLDAILFINECSQSN 498 (598)
Q Consensus 468 yRRAqAy~~LGd------------------y~EAl~d~~kALel~~k~~ 498 (598)
|.+|.++..+++ ..+|+..|+..++..|++.
T Consensus 110 Y~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~yP~S~ 158 (243)
T PRK10866 110 YMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGYPNSQ 158 (243)
T ss_pred HHHHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHHCcCCh
Confidence 999999766651 3678899999999999744
No 53
>PRK11189 lipoprotein NlpI; Provisional
Probab=98.52 E-value=9.4e-07 Score=91.99 Aligned_cols=92 Identities=13% Similarity=-0.047 Sum_probs=82.7
Q ss_pred CCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCcCHHHHHHHHHHHHHhhcHH
Q 007571 402 GNISGAASKYSEALALCPMRSKKERVVLYSNRAQCHLLMQQPLAAISDATRALCLHNPLNRHAKSLWRRAQAYDMLALAK 481 (598)
Q Consensus 402 GdY~eAIe~YskALel~P~~~~~~~a~ly~NRA~cylKLgdyeeAI~D~~kALeLdP~~~~~~KAyyRRAqAy~~LGdy~ 481 (598)
+..+.+|..++++|...|.. ....+..|+++|.+|..+|++++|+.++++|++++|+ ++.+|+.+|.++..+|+++
T Consensus 40 ~~~e~~i~~~~~~l~~~~~~-~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~---~~~a~~~lg~~~~~~g~~~ 115 (296)
T PRK11189 40 LQQEVILARLNQILASRDLT-DEERAQLHYERGVLYDSLGLRALARNDFSQALALRPD---MADAYNYLGIYLTQAGNFD 115 (296)
T ss_pred hHHHHHHHHHHHHHccccCC-cHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCC---CHHHHHHHHHHHHHCCCHH
Confidence 46688999999999755532 3346889999999999999999999999999999999 9999999999999999999
Q ss_pred HHHHHHHHHHHHhccC
Q 007571 482 ESLLDAILFINECSQS 497 (598)
Q Consensus 482 EAl~d~~kALel~~k~ 497 (598)
+|+..|.+++++.|+.
T Consensus 116 ~A~~~~~~Al~l~P~~ 131 (296)
T PRK11189 116 AAYEAFDSVLELDPTY 131 (296)
T ss_pred HHHHHHHHHHHhCCCC
Confidence 9999999999998863
No 54
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=98.52 E-value=3e-06 Score=89.38 Aligned_cols=99 Identities=18% Similarity=0.054 Sum_probs=81.6
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCcC-HHHHH
Q 007571 390 VVKLEGNSLFSAGNISGAASKYSEALALCPMRSKKERVVLYSNRAQCHLLMQQPLAAISDATRALCLHNPLNRH-AKSLW 468 (598)
Q Consensus 390 ~lKeeGN~lfk~GdY~eAIe~YskALel~P~~~~~~~a~ly~NRA~cylKLgdyeeAI~D~~kALeLdP~~~~~-~KAyy 468 (598)
.+...|..+++.|++++|+..|.++++..|.. ..++.++|.+|.+.|++++|+..++++++.+|. + ..++.
T Consensus 182 ~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~-----~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~---~~~~~~~ 253 (389)
T PRK11788 182 FYCELAQQALARGDLDAARALLKKALAADPQC-----VRASILLGDLALAQGDYAAAIEALERVEEQDPE---YLSEVLP 253 (389)
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHhHCcCC-----HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChh---hHHHHHH
Confidence 44567777888888888888888888888887 778888888888888888888888888888887 4 45677
Q ss_pred HHHHHHHHhhcHHHHHHHHHHHHHHhcc
Q 007571 469 RRAQAYDMLALAKESLLDAILFINECSQ 496 (598)
Q Consensus 469 RRAqAy~~LGdy~EAl~d~~kALel~~k 496 (598)
.++.+|...|++++|+..++++++..|+
T Consensus 254 ~l~~~~~~~g~~~~A~~~l~~~~~~~p~ 281 (389)
T PRK11788 254 KLMECYQALGDEAEGLEFLRRALEEYPG 281 (389)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCC
Confidence 8888888888888888888888887654
No 55
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=98.51 E-value=1.4e-06 Score=100.34 Aligned_cols=101 Identities=17% Similarity=0.025 Sum_probs=50.7
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCcCHHHH
Q 007571 388 ALVVKLEGNSLFSAGNISGAASKYSEALALCPMRSKKERVVLYSNRAQCHLLMQQPLAAISDATRALCLHNPLNRHAKSL 467 (598)
Q Consensus 388 A~~lKeeGN~lfk~GdY~eAIe~YskALel~P~~~~~~~a~ly~NRA~cylKLgdyeeAI~D~~kALeLdP~~~~~~KAy 467 (598)
+..+...|..+++.|++++|+..|++++.+.|.+ ..++.++|.+|.++|++++|+..+.+++..+|+ +..++
T Consensus 284 ~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~~-----~~a~~~La~~l~~~G~~~eA~~~l~~al~~~P~---~~~~~ 355 (656)
T PRK15174 284 VRIVTLYADALIRTGQNEKAIPLLQQSLATHPDL-----PYVRAMYARALRQVGQYTAASDEFVQLAREKGV---TSKWN 355 (656)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC-----HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcc---chHHH
Confidence 3344444555555555555555555555555544 444555555555555555555555555555554 44444
Q ss_pred HHHHHHHHHhhcHHHHHHHHHHHHHHhcc
Q 007571 468 WRRAQAYDMLALAKESLLDAILFINECSQ 496 (598)
Q Consensus 468 yRRAqAy~~LGdy~EAl~d~~kALel~~k 496 (598)
+++|.++..+|++++|+..|.++++..|+
T Consensus 356 ~~~a~al~~~G~~deA~~~l~~al~~~P~ 384 (656)
T PRK15174 356 RYAAAALLQAGKTSEAESVFEHYIQARAS 384 (656)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhChh
Confidence 44455555555555555555555555443
No 56
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=98.51 E-value=2.4e-06 Score=80.68 Aligned_cols=109 Identities=15% Similarity=0.080 Sum_probs=96.6
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCcCHHHH
Q 007571 388 ALVVKLEGNSLFSAGNISGAASKYSEALALCPMRSKKERVVLYSNRAQCHLLMQQPLAAISDATRALCLHNPLNRHAKSL 467 (598)
Q Consensus 388 A~~lKeeGN~lfk~GdY~eAIe~YskALel~P~~~~~~~a~ly~NRA~cylKLgdyeeAI~D~~kALeLdP~~~~~~KAy 467 (598)
+..+..+|...+++|+|.+|++.++......|.. +....+..+++-+|++.++|++|+..+++-|+|+|+...-.-++
T Consensus 10 ~~~ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~g--~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~ 87 (142)
T PF13512_consen 10 PQELYQEAQEALQKGNYEEAIKQLEALDTRYPFG--EYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAY 87 (142)
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCC--cccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHH
Confidence 5668999999999999999999999999988875 44568889999999999999999999999999999922234699
Q ss_pred HHHHHHHHHhhc---------------HHHHHHHHHHHHHHhccCC
Q 007571 468 WRRAQAYDMLAL---------------AKESLLDAILFINECSQSN 498 (598)
Q Consensus 468 yRRAqAy~~LGd---------------y~EAl~d~~kALel~~k~~ 498 (598)
|.+|.+++.+.. ...|..+|+..++..|++.
T Consensus 88 Y~~gL~~~~~~~~~~~~~~~~drD~~~~~~A~~~f~~lv~~yP~S~ 133 (142)
T PF13512_consen 88 YMRGLSYYEQDEGSLQSFFRSDRDPTPARQAFRDFEQLVRRYPNSE 133 (142)
T ss_pred HHHHHHHHHHhhhHHhhhcccccCcHHHHHHHHHHHHHHHHCcCCh
Confidence 999999999987 8999999999999999744
No 57
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.49 E-value=2.8e-06 Score=84.00 Aligned_cols=104 Identities=9% Similarity=-0.011 Sum_probs=89.6
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHHHc--------CChHHHHHHHHHHHHhCCC
Q 007571 388 ALVVKLEGNSLFSAGNISGAASKYSEALALCPMRSKKERVVLYSNRAQCHLLM--------QQPLAAISDATRALCLHNP 459 (598)
Q Consensus 388 A~~lKeeGN~lfk~GdY~eAIe~YskALel~P~~~~~~~a~ly~NRA~cylKL--------gdyeeAI~D~~kALeLdP~ 459 (598)
...+...|..+++.|+|++|+..|.++++..|++. ....++.++|.+++.+ +++++|+..+++++..+|+
T Consensus 70 ~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~--~~~~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~ 147 (235)
T TIGR03302 70 EQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHP--DADYAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPN 147 (235)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCC--chHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCC
Confidence 34678889999999999999999999999999862 2234788999999987 8899999999999999999
Q ss_pred CCcCHHH---H--------------HHHHHHHHHhhcHHHHHHHHHHHHHHhcc
Q 007571 460 LNRHAKS---L--------------WRRAQAYDMLALAKESLLDAILFINECSQ 496 (598)
Q Consensus 460 ~~~~~KA---y--------------yRRAqAy~~LGdy~EAl~d~~kALel~~k 496 (598)
+..+ + +..|..|...|++.+|+..|.++++..|+
T Consensus 148 ---~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~ 198 (235)
T TIGR03302 148 ---SEYAPDAKKRMDYLRNRLAGKELYVARFYLKRGAYVAAINRFETVVENYPD 198 (235)
T ss_pred ---ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHCCC
Confidence 5433 2 46788899999999999999999999886
No 58
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.49 E-value=1.1e-06 Score=95.64 Aligned_cols=120 Identities=15% Similarity=0.061 Sum_probs=93.2
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCcCHHHHHHHHHH
Q 007571 394 EGNSLFSAGNISGAASKYSEALALCPMRSKKERVVLYSNRAQCHLLMQQPLAAISDATRALCLHNPLNRHAKSLWRRAQA 473 (598)
Q Consensus 394 eGN~lfk~GdY~eAIe~YskALel~P~~~~~~~a~ly~NRA~cylKLgdyeeAI~D~~kALeLdP~~~~~~KAyyRRAqA 473 (598)
-||=+.-+++.+.|+..|.+|++++|.. ..+|.-.|.=|+.|++-..||..|++|++++|. ..+|+|-+||+
T Consensus 336 IaNYYSlr~eHEKAv~YFkRALkLNp~~-----~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~p~---DyRAWYGLGQa 407 (559)
T KOG1155|consen 336 IANYYSLRSEHEKAVMYFKRALKLNPKY-----LSAWTLMGHEYVEMKNTHAAIESYRRAVDINPR---DYRAWYGLGQA 407 (559)
T ss_pred ehhHHHHHHhHHHHHHHHHHHHhcCcch-----hHHHHHhhHHHHHhcccHHHHHHHHHHHhcCch---hHHHHhhhhHH
Confidence 4666667777888888888888888887 788888888888888888888888888888888 78888888888
Q ss_pred HHHhhcHHHHHHHHHHHHHHhccCCCCchhhccCChHHHHHHHHHHHHHHHHHHHHHHHhc
Q 007571 474 YDMLALAKESLLDAILFINECSQSNDPDLSLRQNKVPDYAERLVKKQMRAAWLFREAAIKH 534 (598)
Q Consensus 474 y~~LGdy~EAl~d~~kALel~~k~~d~~~~~r~~Ki~~~ierlL~Kqk~a~~~f~eA~~k~ 534 (598)
|..++..-=|+-.|++|++..|+++ .++..|.++-.......+|++-+
T Consensus 408 Yeim~Mh~YaLyYfqkA~~~kPnDs-------------Rlw~aLG~CY~kl~~~~eAiKCy 455 (559)
T KOG1155|consen 408 YEIMKMHFYALYYFQKALELKPNDS-------------RLWVALGECYEKLNRLEEAIKCY 455 (559)
T ss_pred HHHhcchHHHHHHHHHHHhcCCCch-------------HHHHHHHHHHHHhccHHHHHHHH
Confidence 8888888888888888888877633 55666666666666666666653
No 59
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=98.48 E-value=1.5e-06 Score=100.20 Aligned_cols=103 Identities=17% Similarity=0.095 Sum_probs=97.3
Q ss_pred HHHHHHHHHHHHHHcCCHHH----HHHHHHHHHHhCCCCchHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCc
Q 007571 387 AALVVKLEGNSLFSAGNISG----AASKYSEALALCPMRSKKERVVLYSNRAQCHLLMQQPLAAISDATRALCLHNPLNR 462 (598)
Q Consensus 387 ~A~~lKeeGN~lfk~GdY~e----AIe~YskALel~P~~~~~~~a~ly~NRA~cylKLgdyeeAI~D~~kALeLdP~~~~ 462 (598)
.+..+...|..++..|++++ |+..|.++++++|++ +.++.++|.++.++|++++|+..++++++++|+
T Consensus 245 ~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~P~~-----~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~--- 316 (656)
T PRK15174 245 GAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFNSDN-----VRIVTLYADALIRTGQNEKAIPLLQQSLATHPD--- 316 (656)
T ss_pred CHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhCCCC-----HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC---
Confidence 35667789999999999986 899999999999998 899999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHhccC
Q 007571 463 HAKSLWRRAQAYDMLALAKESLLDAILFINECSQS 497 (598)
Q Consensus 463 ~~KAyyRRAqAy~~LGdy~EAl~d~~kALel~~k~ 497 (598)
++.+++.+|.+|..+|++++|+..|.++++..|..
T Consensus 317 ~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~P~~ 351 (656)
T PRK15174 317 LPYVRAMYARALRQVGQYTAASDEFVQLAREKGVT 351 (656)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccc
Confidence 99999999999999999999999999999988874
No 60
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=98.47 E-value=3.2e-06 Score=95.76 Aligned_cols=100 Identities=17% Similarity=0.059 Sum_probs=73.5
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCcCHHHH
Q 007571 388 ALVVKLEGNSLFSAGNISGAASKYSEALALCPMRSKKERVVLYSNRAQCHLLMQQPLAAISDATRALCLHNPLNRHAKSL 467 (598)
Q Consensus 388 A~~lKeeGN~lfk~GdY~eAIe~YskALel~P~~~~~~~a~ly~NRA~cylKLgdyeeAI~D~~kALeLdP~~~~~~KAy 467 (598)
...+...|..+.+.|++++|+..|.++++..|.+ +.++.+++..+.+.|+ .+|+..+++++.+.|+ ++..+
T Consensus 770 ~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~-----~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~~~~---~~~~~ 840 (899)
T TIGR02917 770 AVLRTALAELYLAQKDYDKAIKHYRTVVKKAPDN-----AVVLNNLAWLYLELKD-PRALEYAEKALKLAPN---IPAIL 840 (899)
T ss_pred HHHHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCC-----HHHHHHHHHHHHhcCc-HHHHHHHHHHHhhCCC---CcHHH
Confidence 3445566677777777777777777777777776 6777777777777777 6677777777777777 77777
Q ss_pred HHHHHHHHHhhcHHHHHHHHHHHHHHhcc
Q 007571 468 WRRAQAYDMLALAKESLLDAILFINECSQ 496 (598)
Q Consensus 468 yRRAqAy~~LGdy~EAl~d~~kALel~~k 496 (598)
..+|.++..+|++++|+..|+++++..|.
T Consensus 841 ~~~~~~~~~~g~~~~A~~~~~~a~~~~~~ 869 (899)
T TIGR02917 841 DTLGWLLVEKGEADRALPLLRKAVNIAPE 869 (899)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 77777777777777777777777777654
No 61
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.47 E-value=2.9e-06 Score=98.36 Aligned_cols=97 Identities=10% Similarity=-0.022 Sum_probs=47.8
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCcCHHHH
Q 007571 388 ALVVKLEGNSLFSAGNISGAASKYSEALALCPMRSKKERVVLYSNRAQCHLLMQQPLAAISDATRALCLHNPLNRHAKSL 467 (598)
Q Consensus 388 A~~lKeeGN~lfk~GdY~eAIe~YskALel~P~~~~~~~a~ly~NRA~cylKLgdyeeAI~D~~kALeLdP~~~~~~KAy 467 (598)
+..+...|......|.|++|...+..++++.|++ ..++.|+|.++.+++++++|+..+++++..+|+ +..++
T Consensus 86 ~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd~-----~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~---~~~~~ 157 (694)
T PRK15179 86 ELFQVLVARALEAAHRSDEGLAVWRGIHQRFPDS-----SEAFILMLRGVKRQQGIEAGRAEIELYFSGGSS---SAREI 157 (694)
T ss_pred HHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCc-----HHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCC---CHHHH
Confidence 3344444444444455555555555555555544 444444444444445555555555555544444 44444
Q ss_pred HHHHHHHHHhhcHHHHHHHHHHHHH
Q 007571 468 WRRAQAYDMLALAKESLLDAILFIN 492 (598)
Q Consensus 468 yRRAqAy~~LGdy~EAl~d~~kALe 492 (598)
+.+|.++.++|+|++|+..|++++.
T Consensus 158 ~~~a~~l~~~g~~~~A~~~y~~~~~ 182 (694)
T PRK15179 158 LLEAKSWDEIGQSEQADACFERLSR 182 (694)
T ss_pred HHHHHHHHHhcchHHHHHHHHHHHh
Confidence 4445555555555555444444444
No 62
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=98.47 E-value=3.1e-06 Score=95.91 Aligned_cols=102 Identities=20% Similarity=0.104 Sum_probs=77.8
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCcCHHH
Q 007571 387 AALVVKLEGNSLFSAGNISGAASKYSEALALCPMRSKKERVVLYSNRAQCHLLMQQPLAAISDATRALCLHNPLNRHAKS 466 (598)
Q Consensus 387 ~A~~lKeeGN~lfk~GdY~eAIe~YskALel~P~~~~~~~a~ly~NRA~cylKLgdyeeAI~D~~kALeLdP~~~~~~KA 466 (598)
.+..+...|..+++.|+|++|+..|.++++.+|.. ..++..+|.+++..|++++|+..++++++.+|. +..+
T Consensus 124 ~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~-----~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~---~~~~ 195 (899)
T TIGR02917 124 AAELLALRGLAYLGLGQLELAQKSYEQALAIDPRS-----LYAKLGLAQLALAENRFDEARALIDEVLTADPG---NVDA 195 (899)
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC-----hhhHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC---ChHH
Confidence 45566777777777788888888888887777776 667777777777777777777777777777777 7777
Q ss_pred HHHHHHHHHHhhcHHHHHHHHHHHHHHhcc
Q 007571 467 LWRRAQAYDMLALAKESLLDAILFINECSQ 496 (598)
Q Consensus 467 yyRRAqAy~~LGdy~EAl~d~~kALel~~k 496 (598)
++.+|.++...|++++|+..|+++++..|.
T Consensus 196 ~~~~~~~~~~~g~~~~A~~~~~~a~~~~p~ 225 (899)
T TIGR02917 196 LLLKGDLLLSLGNIELALAAYRKAIALRPN 225 (899)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhhCCC
Confidence 777777777777777777777777776654
No 63
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=98.47 E-value=1.1e-06 Score=71.59 Aligned_cols=69 Identities=25% Similarity=0.249 Sum_probs=59.3
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCcCHHHHHHHH
Q 007571 395 GNSLFSAGNISGAASKYSEALALCPMRSKKERVVLYSNRAQCHLLMQQPLAAISDATRALCLHNPLNRHAKSLWRRA 471 (598)
Q Consensus 395 GN~lfk~GdY~eAIe~YskALel~P~~~~~~~a~ly~NRA~cylKLgdyeeAI~D~~kALeLdP~~~~~~KAyyRRA 471 (598)
.+.+++.++|+.|++.+++++.++|.+ +.++.++|.||.++|+|.+|+.+++++++++|+ ++.+..-++
T Consensus 2 ~~~~~~~~~~~~A~~~~~~~l~~~p~~-----~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~---~~~~~~~~a 70 (73)
T PF13371_consen 2 KQIYLQQEDYEEALEVLERALELDPDD-----PELWLQRARCLFQLGRYEEALEDLERALELSPD---DPDARALRA 70 (73)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHhCccc-----chhhHHHHHHHHHhccHHHHHHHHHHHHHHCCC---cHHHHHHHH
Confidence 356788999999999999999999988 899999999999999999999999999999998 776655444
No 64
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=98.47 E-value=2.6e-07 Score=103.68 Aligned_cols=104 Identities=12% Similarity=0.025 Sum_probs=78.3
Q ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCcCH
Q 007571 385 QAAALVVKLEGNSLFSAGNISGAASKYSEALALCPMRSKKERVVLYSNRAQCHLLMQQPLAAISDATRALCLHNPLNRHA 464 (598)
Q Consensus 385 ~~~A~~lKeeGN~lfk~GdY~eAIe~YskALel~P~~~~~~~a~ly~NRA~cylKLgdyeeAI~D~~kALeLdP~~~~~~ 464 (598)
....+.+...||-+--+++++.||++|.+||+++|.. +-+|.-.|.=+....+|+.|...|++||.++|. +.
T Consensus 418 ~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp~f-----aYayTLlGhE~~~~ee~d~a~~~fr~Al~~~~r---hY 489 (638)
T KOG1126|consen 418 PNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLDPRF-----AYAYTLLGHESIATEEFDKAMKSFRKALGVDPR---HY 489 (638)
T ss_pred CCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccCCcc-----chhhhhcCChhhhhHHHHhHHHHHHhhhcCCch---hh
Confidence 3457789999999999999999999999999999986 566666666666666666666666666666666 66
Q ss_pred HHHHHHHHHHHHhhcHHHHHHHHHHHHHHhcc
Q 007571 465 KSLWRRAQAYDMLALAKESLLDAILFINECSQ 496 (598)
Q Consensus 465 KAyyRRAqAy~~LGdy~EAl~d~~kALel~~k 496 (598)
.|||-+|.+|+++++++.|.-.|++|+++.|.
T Consensus 490 nAwYGlG~vy~Kqek~e~Ae~~fqkA~~INP~ 521 (638)
T KOG1126|consen 490 NAWYGLGTVYLKQEKLEFAEFHFQKAVEINPS 521 (638)
T ss_pred HHHHhhhhheeccchhhHHHHHHHhhhcCCcc
Confidence 66666666666666666666666666666654
No 65
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=98.46 E-value=6.2e-07 Score=71.72 Aligned_cols=63 Identities=11% Similarity=-0.077 Sum_probs=59.5
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHhCCCCCcCHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHhcc
Q 007571 431 SNRAQCHLLMQQPLAAISDATRALCLHNPLNRHAKSLWRRAQAYDMLALAKESLLDAILFINECSQ 496 (598)
Q Consensus 431 ~NRA~cylKLgdyeeAI~D~~kALeLdP~~~~~~KAyyRRAqAy~~LGdy~EAl~d~~kALel~~k 496 (598)
+++|..++..|+|++|+..++++++.+|+ ++.+++.+|.++..+|++++|+..|+++++..|+
T Consensus 1 ~~~a~~~~~~g~~~~A~~~~~~~l~~~P~---~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~ 63 (65)
T PF13432_consen 1 YALARALYQQGDYDEAIAAFEQALKQDPD---NPEAWYLLGRILYQQGRYDEALAYYERALELDPD 63 (65)
T ss_dssp HHHHHHHHHCTHHHHHHHHHHHHHCCSTT---HHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred ChHHHHHHHcCCHHHHHHHHHHHHHHCCC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcC
Confidence 36899999999999999999999999999 9999999999999999999999999999999876
No 66
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.46 E-value=2.6e-06 Score=84.09 Aligned_cols=91 Identities=10% Similarity=-0.060 Sum_probs=84.7
Q ss_pred HcCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCcCHHHHHHHHHHH-HHhh
Q 007571 400 SAGNISGAASKYSEALALCPMRSKKERVVLYSNRAQCHLLMQQPLAAISDATRALCLHNPLNRHAKSLWRRAQAY-DMLA 478 (598)
Q Consensus 400 k~GdY~eAIe~YskALel~P~~~~~~~a~ly~NRA~cylKLgdyeeAI~D~~kALeLdP~~~~~~KAyyRRAqAy-~~LG 478 (598)
..++.++++..|.++++.+|++ ...|.++|.+|+.+|++++|+..+++|++++|+ ++..++..|.++ ...|
T Consensus 51 ~~~~~~~~i~~l~~~L~~~P~~-----~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~---~~~~~~~lA~aL~~~~g 122 (198)
T PRK10370 51 SQQTPEAQLQALQDKIRANPQN-----SEQWALLGEYYLWRNDYDNALLAYRQALQLRGE---NAELYAALATVLYYQAG 122 (198)
T ss_pred CchhHHHHHHHHHHHHHHCCCC-----HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC---CHHHHHHHHHHHHHhcC
Confidence 3678899999999999999999 999999999999999999999999999999999 999999999986 6778
Q ss_pred c--HHHHHHHHHHHHHHhccCC
Q 007571 479 L--AKESLLDAILFINECSQSN 498 (598)
Q Consensus 479 d--y~EAl~d~~kALel~~k~~ 498 (598)
+ +++|...+.++++..|++.
T Consensus 123 ~~~~~~A~~~l~~al~~dP~~~ 144 (198)
T PRK10370 123 QHMTPQTREMIDKALALDANEV 144 (198)
T ss_pred CCCcHHHHHHHHHHHHhCCCCh
Confidence 7 5999999999999988743
No 67
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.44 E-value=2.4e-06 Score=77.07 Aligned_cols=80 Identities=11% Similarity=-0.072 Sum_probs=75.9
Q ss_pred HHHHHHHHhCCCCchHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCcCHHHHHHHHHHHHHhhcHHHHHHHHH
Q 007571 409 SKYSEALALCPMRSKKERVVLYSNRAQCHLLMQQPLAAISDATRALCLHNPLNRHAKSLWRRAQAYDMLALAKESLLDAI 488 (598)
Q Consensus 409 e~YskALel~P~~~~~~~a~ly~NRA~cylKLgdyeeAI~D~~kALeLdP~~~~~~KAyyRRAqAy~~LGdy~EAl~d~~ 488 (598)
+.|.+++...|.+ .....++|.+++..|++++|+..+++++.++|+ ++.+++++|.++..+|++++|+..|.
T Consensus 4 ~~~~~~l~~~p~~-----~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~---~~~~~~~la~~~~~~~~~~~A~~~~~ 75 (135)
T TIGR02552 4 ATLKDLLGLDSEQ-----LEQIYALAYNLYQQGRYDEALKLFQLLAAYDPY---NSRYWLGLAACCQMLKEYEEAIDAYA 75 (135)
T ss_pred hhHHHHHcCChhh-----HHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCC---cHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4688999999998 888999999999999999999999999999999 99999999999999999999999999
Q ss_pred HHHHHhcc
Q 007571 489 LFINECSQ 496 (598)
Q Consensus 489 kALel~~k 496 (598)
++++..|.
T Consensus 76 ~~~~~~p~ 83 (135)
T TIGR02552 76 LAAALDPD 83 (135)
T ss_pred HHHhcCCC
Confidence 99998775
No 68
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=98.44 E-value=4.9e-06 Score=87.71 Aligned_cols=103 Identities=12% Similarity=0.005 Sum_probs=91.6
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCcCHH
Q 007571 386 AAALVVKLEGNSLFSAGNISGAASKYSEALALCPMRSKKERVVLYSNRAQCHLLMQQPLAAISDATRALCLHNPLNRHAK 465 (598)
Q Consensus 386 ~~A~~lKeeGN~lfk~GdY~eAIe~YskALel~P~~~~~~~a~ly~NRA~cylKLgdyeeAI~D~~kALeLdP~~~~~~K 465 (598)
.........|..+.+.|++++|++.|.+++...|.+ ...++.+++.+|.++|++++|+..+.++++++|+ ...
T Consensus 212 ~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~----~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~p~---~~~ 284 (389)
T PRK11788 212 QCVRASILLGDLALAQGDYAAAIEALERVEEQDPEY----LSEVLPKLMECYQALGDEAEGLEFLRRALEEYPG---ADL 284 (389)
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhh----HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC---chH
Confidence 345667789999999999999999999999998864 3467888999999999999999999999999998 654
Q ss_pred HHHHHHHHHHHhhcHHHHHHHHHHHHHHhcc
Q 007571 466 SLWRRAQAYDMLALAKESLLDAILFINECSQ 496 (598)
Q Consensus 466 AyyRRAqAy~~LGdy~EAl~d~~kALel~~k 496 (598)
+..+|.++...|++++|+..|.++++..|+
T Consensus 285 -~~~la~~~~~~g~~~~A~~~l~~~l~~~P~ 314 (389)
T PRK11788 285 -LLALAQLLEEQEGPEAAQALLREQLRRHPS 314 (389)
T ss_pred -HHHHHHHHHHhCCHHHHHHHHHHHHHhCcC
Confidence 488999999999999999999999999765
No 69
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=98.44 E-value=3.4e-06 Score=101.21 Aligned_cols=96 Identities=17% Similarity=-0.002 Sum_probs=88.3
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCcCHHHHHHHHHH
Q 007571 394 EGNSLFSAGNISGAASKYSEALALCPMRSKKERVVLYSNRAQCHLLMQQPLAAISDATRALCLHNPLNRHAKSLWRRAQA 473 (598)
Q Consensus 394 eGN~lfk~GdY~eAIe~YskALel~P~~~~~~~a~ly~NRA~cylKLgdyeeAI~D~~kALeLdP~~~~~~KAyyRRAqA 473 (598)
.+..++..|++++|+..|.+|++++|+ ..+|.|+|.++.++|++++|+..+++++.++|+ ++.+++.+|.+
T Consensus 582 La~~l~~~Gr~~eAl~~~~~AL~l~P~------~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd---~~~a~~nLG~a 652 (987)
T PRK09782 582 LHAQRYIPGQPELALNDLTRSLNIAPS------ANAYVARATIYRQRHNVPAAVSDLRAALELEPN---NSNYQAALGYA 652 (987)
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHhCCC------HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC---CHHHHHHHHHH
Confidence 344555669999999999999999994 678999999999999999999999999999999 99999999999
Q ss_pred HHHhhcHHHHHHHHHHHHHHhccCC
Q 007571 474 YDMLALAKESLLDAILFINECSQSN 498 (598)
Q Consensus 474 y~~LGdy~EAl~d~~kALel~~k~~ 498 (598)
+..+|++++|+..|.++++..|.+.
T Consensus 653 L~~~G~~eeAi~~l~~AL~l~P~~~ 677 (987)
T PRK09782 653 LWDSGDIAQSREMLERAHKGLPDDP 677 (987)
T ss_pred HHHCCCHHHHHHHHHHHHHhCCCCH
Confidence 9999999999999999999988643
No 70
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.43 E-value=3.1e-06 Score=98.11 Aligned_cols=103 Identities=9% Similarity=-0.143 Sum_probs=98.5
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCcCHH
Q 007571 386 AAALVVKLEGNSLFSAGNISGAASKYSEALALCPMRSKKERVVLYSNRAQCHLLMQQPLAAISDATRALCLHNPLNRHAK 465 (598)
Q Consensus 386 ~~A~~lKeeGN~lfk~GdY~eAIe~YskALel~P~~~~~~~a~ly~NRA~cylKLgdyeeAI~D~~kALeLdP~~~~~~K 465 (598)
..+.+....++.+++.+++++|+..+.+++...|++ +..++++|.++.++|+|++|+..|++++.-+|+ +.+
T Consensus 118 d~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~~-----~~~~~~~a~~l~~~g~~~~A~~~y~~~~~~~p~---~~~ 189 (694)
T PRK15179 118 DSSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSSS-----AREILLEAKSWDEIGQSEQADACFERLSRQHPE---FEN 189 (694)
T ss_pred CcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCCC-----HHHHHHHHHHHHHhcchHHHHHHHHHHHhcCCC---cHH
Confidence 457778899999999999999999999999999999 999999999999999999999999999999999 999
Q ss_pred HHHHHHHHHHHhhcHHHHHHHHHHHHHHhcc
Q 007571 466 SLWRRAQAYDMLALAKESLLDAILFINECSQ 496 (598)
Q Consensus 466 AyyRRAqAy~~LGdy~EAl~d~~kALel~~k 496 (598)
++..+|.+++.+|+.++|...|+++++....
T Consensus 190 ~~~~~a~~l~~~G~~~~A~~~~~~a~~~~~~ 220 (694)
T PRK15179 190 GYVGWAQSLTRRGALWRARDVLQAGLDAIGD 220 (694)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhhCc
Confidence 9999999999999999999999999998764
No 71
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=98.40 E-value=1e-06 Score=70.66 Aligned_cols=67 Identities=24% Similarity=0.060 Sum_probs=59.3
Q ss_pred HHHcCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCcCHHHHHHHHH
Q 007571 398 LFSAGNISGAASKYSEALALCPMRSKKERVVLYSNRAQCHLLMQQPLAAISDATRALCLHNPLNRHAKSLWRRAQ 472 (598)
Q Consensus 398 lfk~GdY~eAIe~YskALel~P~~~~~~~a~ly~NRA~cylKLgdyeeAI~D~~kALeLdP~~~~~~KAyyRRAq 472 (598)
+++.|+|++|+..|++++...|.+ ..++.++|.||++.|++++|...+.+++..+|+ ++..+.-+++
T Consensus 1 ll~~~~~~~A~~~~~~~l~~~p~~-----~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~---~~~~~~l~a~ 67 (68)
T PF14559_consen 1 LLKQGDYDEAIELLEKALQRNPDN-----PEARLLLAQCYLKQGQYDEAEELLERLLKQDPD---NPEYQQLLAQ 67 (68)
T ss_dssp HHHTTHHHHHHHHHHHHHHHTTTS-----HHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTT---HHHHHHHHHH
T ss_pred ChhccCHHHHHHHHHHHHHHCCCC-----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcC---HHHHHHHHhc
Confidence 478999999999999999999999 999999999999999999999999999999999 7665554443
No 72
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.39 E-value=5.4e-06 Score=84.84 Aligned_cols=101 Identities=12% Similarity=-0.019 Sum_probs=94.7
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCcCHHHH
Q 007571 388 ALVVKLEGNSLFSAGNISGAASKYSEALALCPMRSKKERVVLYSNRAQCHLLMQQPLAAISDATRALCLHNPLNRHAKSL 467 (598)
Q Consensus 388 A~~lKeeGN~lfk~GdY~eAIe~YskALel~P~~~~~~~a~ly~NRA~cylKLgdyeeAI~D~~kALeLdP~~~~~~KAy 467 (598)
...++.+|...|..|+|.+|+..+.+|..+.|++ ..+|+-+|.+|.++|+++.|-..|.+|+++.|+ .+..+
T Consensus 100 ~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~p~d-----~~~~~~lgaaldq~Gr~~~Ar~ay~qAl~L~~~---~p~~~ 171 (257)
T COG5010 100 RELLAAQGKNQIRNGNFGEAVSVLRKAARLAPTD-----WEAWNLLGAALDQLGRFDEARRAYRQALELAPN---EPSIA 171 (257)
T ss_pred HHHHHHHHHHHHHhcchHHHHHHHHHHhccCCCC-----hhhhhHHHHHHHHccChhHHHHHHHHHHHhccC---Cchhh
Confidence 3445669999999999999999999999999999 999999999999999999999999999999999 99999
Q ss_pred HHHHHHHHHhhcHHHHHHHHHHHHHHhcc
Q 007571 468 WRRAQAYDMLALAKESLLDAILFINECSQ 496 (598)
Q Consensus 468 yRRAqAy~~LGdy~EAl~d~~kALel~~k 496 (598)
-++|..|+-.|+++.|...+..+...-+.
T Consensus 172 nNlgms~~L~gd~~~A~~lll~a~l~~~a 200 (257)
T COG5010 172 NNLGMSLLLRGDLEDAETLLLPAYLSPAA 200 (257)
T ss_pred hhHHHHHHHcCCHHHHHHHHHHHHhCCCC
Confidence 99999999999999999999998877554
No 73
>KOG0546 consensus HSP90 co-chaperone CPR7/Cyclophilin [Posttranslational modification, protein turnover, chaperones]
Probab=98.33 E-value=6.3e-07 Score=94.89 Aligned_cols=109 Identities=24% Similarity=0.185 Sum_probs=97.9
Q ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC---CC-----------chHHHHHHHHHHHHHHHHcCChHHHHHHH
Q 007571 385 QAAALVVKLEGNSLFSAGNISGAASKYSEALALCP---MR-----------SKKERVVLYSNRAQCHLLMQQPLAAISDA 450 (598)
Q Consensus 385 ~~~A~~lKeeGN~lfk~GdY~eAIe~YskALel~P---~~-----------~~~~~a~ly~NRA~cylKLgdyeeAI~D~ 450 (598)
...+...++.||..|++++|..|...|.+++.... .. ....+..++.|.+.|-++++.+..|+-.+
T Consensus 219 ~~~~~~~k~~~~~~~kk~~~~~a~~k~~k~~r~~~~~s~~~~~e~~~~~~~~~~~r~~~~~n~~~~~lk~~~~~~a~~~~ 298 (372)
T KOG0546|consen 219 LEREEKKKNIGNKEFKKQRYREALAKYRKALRYLSEQSRDREKEQENRIPPLRELRFSIRRNLAAVGLKVKGRGGARFRT 298 (372)
T ss_pred hhhhhhhhccchhhhhhccHhHHHHHHHHHhhhhcccccccccccccccccccccccccccchHHhcccccCCCcceecc
Confidence 45678899999999999999999999999998643 11 12346788999999999999999999999
Q ss_pred HHHHHhCCCCCcCHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHhcc
Q 007571 451 TRALCLHNPLNRHAKSLWRRAQAYDMLALAKESLLDAILFINECSQ 496 (598)
Q Consensus 451 ~kALeLdP~~~~~~KAyyRRAqAy~~LGdy~EAl~d~~kALel~~k 496 (598)
..+++.++. ..++||||+++++.+.++++|+++++.+....|.
T Consensus 299 ~~~~~~~~s---~tka~~Rr~~~~~~~~~~~~a~~~~~~a~~~~p~ 341 (372)
T KOG0546|consen 299 NEALRDERS---KTKAHYRRGQAYKLLKNYDEALEDLKKAKQKAPN 341 (372)
T ss_pred ccccccChh---hCcHHHHHHhHHHhhhchhhhHHHHHHhhccCcc
Confidence 999999999 9999999999999999999999999999999886
No 74
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=98.30 E-value=8.5e-06 Score=75.81 Aligned_cols=99 Identities=16% Similarity=0.006 Sum_probs=84.2
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCcCHHH
Q 007571 387 AALVVKLEGNSLFSAGNISGAASKYSEALALCPMRSKKERVVLYSNRAQCHLLMQQPLAAISDATRALCLHNPLNRHAKS 466 (598)
Q Consensus 387 ~A~~lKeeGN~lfk~GdY~eAIe~YskALel~P~~~~~~~a~ly~NRA~cylKLgdyeeAI~D~~kALeLdP~~~~~~KA 466 (598)
........|..++..|+|++|+..|.+++...|+. .....+..++|.+++.+|+|++|+..+..+ .-.+- .+.+
T Consensus 47 a~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~--~l~~~a~l~LA~~~~~~~~~d~Al~~L~~~-~~~~~---~~~~ 120 (145)
T PF09976_consen 47 AALAALQLAKAAYEQGDYDEAKAALEKALANAPDP--ELKPLARLRLARILLQQGQYDEALATLQQI-PDEAF---KALA 120 (145)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCH--HHHHHHHHHHHHHHHHcCCHHHHHHHHHhc-cCcch---HHHH
Confidence 35667778999999999999999999999987653 566788999999999999999999998662 22222 5678
Q ss_pred HHHHHHHHHHhhcHHHHHHHHHHHH
Q 007571 467 LWRRAQAYDMLALAKESLLDAILFI 491 (598)
Q Consensus 467 yyRRAqAy~~LGdy~EAl~d~~kAL 491 (598)
+..+|.+|...|++++|+..|++||
T Consensus 121 ~~~~Gdi~~~~g~~~~A~~~y~~Al 145 (145)
T PF09976_consen 121 AELLGDIYLAQGDYDEARAAYQKAL 145 (145)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHhC
Confidence 8889999999999999999999875
No 75
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=98.28 E-value=1.2e-05 Score=98.25 Aligned_cols=100 Identities=13% Similarity=0.042 Sum_probs=93.9
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCcCHHHHHH
Q 007571 390 VVKLEGNSLFSAGNISGAASKYSEALALCPMRSKKERVVLYSNRAQCHLLMQQPLAAISDATRALCLHNPLNRHAKSLWR 469 (598)
Q Consensus 390 ~lKeeGN~lfk~GdY~eAIe~YskALel~P~~~~~~~a~ly~NRA~cylKLgdyeeAI~D~~kALeLdP~~~~~~KAyyR 469 (598)
.+...|..+.+.|++++|+..|.++++..|.+ +.++.+++.+|..+|++++|+..++++++.+|+ ++.++.+
T Consensus 605 ~~~~La~~~~~~g~~~~A~~~y~~al~~~P~~-----~~a~~~la~~~~~~g~~~eA~~~l~~ll~~~p~---~~~~~~~ 676 (1157)
T PRK11447 605 IDLTLADWAQQRGDYAAARAAYQRVLTREPGN-----ADARLGLIEVDIAQGDLAAARAQLAKLPATAND---SLNTQRR 676 (1157)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-----HHHHHHHHHHHHHCCCHHHHHHHHHHHhccCCC---ChHHHHH
Confidence 45678889999999999999999999999998 899999999999999999999999999999999 9999999
Q ss_pred HHHHHHHhhcHHHHHHHHHHHHHHhccC
Q 007571 470 RAQAYDMLALAKESLLDAILFINECSQS 497 (598)
Q Consensus 470 RAqAy~~LGdy~EAl~d~~kALel~~k~ 497 (598)
+|.++..+|++++|+..|+++++..++.
T Consensus 677 la~~~~~~g~~~eA~~~~~~al~~~~~~ 704 (1157)
T PRK11447 677 VALAWAALGDTAAAQRTFNRLIPQAKSQ 704 (1157)
T ss_pred HHHHHHhCCCHHHHHHHHHHHhhhCccC
Confidence 9999999999999999999999987653
No 76
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=98.28 E-value=8.7e-06 Score=99.35 Aligned_cols=109 Identities=13% Similarity=0.038 Sum_probs=84.5
Q ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCchHHH---------HHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 007571 385 QAAALVVKLEGNSLFSAGNISGAASKYSEALALCPMRSKKER---------VVLYSNRAQCHLLMQQPLAAISDATRALC 455 (598)
Q Consensus 385 ~~~A~~lKeeGN~lfk~GdY~eAIe~YskALel~P~~~~~~~---------a~ly~NRA~cylKLgdyeeAI~D~~kALe 455 (598)
...+..+...|..+++.|++++|+..|++|++..|.+..... ..+..+++.++++.|++++|+..++++++
T Consensus 300 P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~~~g~~~~~~g~~~eA~~~~~~Al~ 379 (1157)
T PRK11447 300 PKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLIQQGDAALKANNLAQAERLYQQARQ 379 (1157)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 445667778888888888888888888888888887522111 11234567788888888888888888888
Q ss_pred hCCCCCcCHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHhcc
Q 007571 456 LHNPLNRHAKSLWRRAQAYDMLALAKESLLDAILFINECSQ 496 (598)
Q Consensus 456 LdP~~~~~~KAyyRRAqAy~~LGdy~EAl~d~~kALel~~k 496 (598)
++|+ +..+++.+|.++...|++++|+..|+++++..|.
T Consensus 380 ~~P~---~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~ 417 (1157)
T PRK11447 380 VDNT---DSYAVLGLGDVAMARKDYAAAERYYQQALRMDPG 417 (1157)
T ss_pred hCCC---CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC
Confidence 8888 8888888888888888888888888888888665
No 77
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=98.27 E-value=3.1e-06 Score=92.76 Aligned_cols=71 Identities=30% Similarity=0.276 Sum_probs=65.9
Q ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCchHHHH---HHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC
Q 007571 384 KQAAALVVKLEGNSLFSAGNISGAASKYSEALALCPMRSKKERV---VLYSNRAQCHLLMQQPLAAISDATRALCLHNP 459 (598)
Q Consensus 384 ~~~~A~~lKeeGN~lfk~GdY~eAIe~YskALel~P~~~~~~~a---~ly~NRA~cylKLgdyeeAI~D~~kALeLdP~ 459 (598)
....+..+.+.|+.+++.|+|++|+..|++||+++|++ . .+|+|+|.||.++|++++|+.++.+||++.+.
T Consensus 71 dP~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~-----aeA~~A~yNLAcaya~LGr~dEAla~LrrALelsn~ 144 (453)
T PLN03098 71 DVKTAEDAVNLGLSLFSKGRVKDALAQFETALELNPNP-----DEAQAAYYNKACCHAYREEGKKAADCLRTALRDYNL 144 (453)
T ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCc-----hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcch
Confidence 46789999999999999999999999999999999998 5 46999999999999999999999999998433
No 78
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=98.25 E-value=5.2e-06 Score=84.80 Aligned_cols=102 Identities=19% Similarity=-0.024 Sum_probs=87.3
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCcCHHH
Q 007571 387 AALVVKLEGNSLFSAGNISGAASKYSEALALCPMRSKKERVVLYSNRAQCHLLMQQPLAAISDATRALCLHNPLNRHAKS 466 (598)
Q Consensus 387 ~A~~lKeeGN~lfk~GdY~eAIe~YskALel~P~~~~~~~a~ly~NRA~cylKLgdyeeAI~D~~kALeLdP~~~~~~KA 466 (598)
.+..+...|+.+.+.|++++|+..|.+|+++.|++ ..+..+++..+..+|+++++...+.......|+ ++..
T Consensus 145 ~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~P~~-----~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~---~~~~ 216 (280)
T PF13429_consen 145 SARFWLALAEIYEQLGDPDKALRDYRKALELDPDD-----PDARNALAWLLIDMGDYDEAREALKRLLKAAPD---DPDL 216 (280)
T ss_dssp -HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH-TT------HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HT---SCCH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC-----HHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcC---HHHH
Confidence 46678889999999999999999999999999998 888888999999999999988888887777777 6677
Q ss_pred HHHHHHHHHHhhcHHHHHHHHHHHHHHhcc
Q 007571 467 LWRRAQAYDMLALAKESLLDAILFINECSQ 496 (598)
Q Consensus 467 yyRRAqAy~~LGdy~EAl~d~~kALel~~k 496 (598)
+...|.++..+|++++|+..|+++++..|+
T Consensus 217 ~~~la~~~~~lg~~~~Al~~~~~~~~~~p~ 246 (280)
T PF13429_consen 217 WDALAAAYLQLGRYEEALEYLEKALKLNPD 246 (280)
T ss_dssp CHHHHHHHHHHT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHhcccccccccccccccccccccc
Confidence 888899999999999999999999998775
No 79
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=98.25 E-value=1.5e-05 Score=93.33 Aligned_cols=103 Identities=14% Similarity=-0.011 Sum_probs=95.4
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCcCHHH
Q 007571 387 AALVVKLEGNSLFSAGNISGAASKYSEALALCPMRSKKERVVLYSNRAQCHLLMQQPLAAISDATRALCLHNPLNRHAKS 466 (598)
Q Consensus 387 ~A~~lKeeGN~lfk~GdY~eAIe~YskALel~P~~~~~~~a~ly~NRA~cylKLgdyeeAI~D~~kALeLdP~~~~~~KA 466 (598)
.+..+...|..+.+.|++.+|+..|.++++..|.+ ..++.+++.++...|++++|+..+.++++.+|+ ++.
T Consensus 48 ~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~P~~-----~~a~~~la~~l~~~g~~~eA~~~l~~~l~~~P~---~~~- 118 (765)
T PRK10049 48 PARGYAAVAVAYRNLKQWQNSLTLWQKALSLEPQN-----DDYQRGLILTLADAGQYDEALVKAKQLVSGAPD---KAN- 118 (765)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-----HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC---CHH-
Confidence 35558888999999999999999999999999998 888899999999999999999999999999999 888
Q ss_pred HHHHHHHHHHhhcHHHHHHHHHHHHHHhccCC
Q 007571 467 LWRRAQAYDMLALAKESLLDAILFINECSQSN 498 (598)
Q Consensus 467 yyRRAqAy~~LGdy~EAl~d~~kALel~~k~~ 498 (598)
++.+|.++...|++++|+..|+++++..|++.
T Consensus 119 ~~~la~~l~~~g~~~~Al~~l~~al~~~P~~~ 150 (765)
T PRK10049 119 LLALAYVYKRAGRHWDELRAMTQALPRAPQTQ 150 (765)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCH
Confidence 99999999999999999999999999988743
No 80
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=98.24 E-value=1.2e-05 Score=94.08 Aligned_cols=102 Identities=14% Similarity=-0.074 Sum_probs=96.6
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCcCHHHH
Q 007571 388 ALVVKLEGNSLFSAGNISGAASKYSEALALCPMRSKKERVVLYSNRAQCHLLMQQPLAAISDATRALCLHNPLNRHAKSL 467 (598)
Q Consensus 388 A~~lKeeGN~lfk~GdY~eAIe~YskALel~P~~~~~~~a~ly~NRA~cylKLgdyeeAI~D~~kALeLdP~~~~~~KAy 467 (598)
.......|..+...|++++|+..+.+++...|.+ ..++.++|.++..+|++++|+..+++|+.++|+ +..++
T Consensus 359 ~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~P~n-----~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~Pd---~~~l~ 430 (765)
T PRK10049 359 LQGQSLLSQVAKYSNDLPQAEMRARELAYNAPGN-----QGLRIDYASVLQARGWPRAAENELKKAEVLEPR---NINLE 430 (765)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCC---ChHHH
Confidence 3455678889999999999999999999999999 899999999999999999999999999999999 99999
Q ss_pred HHHHHHHHHhhcHHHHHHHHHHHHHHhccC
Q 007571 468 WRRAQAYDMLALAKESLLDAILFINECSQS 497 (598)
Q Consensus 468 yRRAqAy~~LGdy~EAl~d~~kALel~~k~ 497 (598)
+.+|.+++.+|++++|...++++++..|++
T Consensus 431 ~~~a~~al~~~~~~~A~~~~~~ll~~~Pd~ 460 (765)
T PRK10049 431 VEQAWTALDLQEWRQMDVLTDDVVAREPQD 460 (765)
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHhCCCC
Confidence 999999999999999999999999998873
No 81
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=98.24 E-value=2e-05 Score=82.19 Aligned_cols=107 Identities=18% Similarity=0.066 Sum_probs=97.6
Q ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHHHcC---ChHHHHHHHHHHHHhCCCC
Q 007571 384 KQAAALVVKLEGNSLFSAGNISGAASKYSEALALCPMRSKKERVVLYSNRAQCHLLMQ---QPLAAISDATRALCLHNPL 460 (598)
Q Consensus 384 ~~~~A~~lKeeGN~lfk~GdY~eAIe~YskALel~P~~~~~~~a~ly~NRA~cylKLg---dyeeAI~D~~kALeLdP~~ 460 (598)
+...++.+.-.|..++..|++..|...|.+|+++.|++ +.++.-.|.+++... .-.++...+++||.+||+
T Consensus 152 nP~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n-----~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~- 225 (287)
T COG4235 152 NPGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDN-----PEILLGLAEALYYQAGQQMTAKARALLRQALALDPA- 225 (287)
T ss_pred CCCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCC-----HHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCc-
Confidence 34567889999999999999999999999999999999 888888888887655 467899999999999999
Q ss_pred CcCHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHhccCC
Q 007571 461 NRHAKSLWRRAQAYDMLALAKESLLDAILFINECSQSN 498 (598)
Q Consensus 461 ~~~~KAyyRRAqAy~~LGdy~EAl~d~~kALel~~k~~ 498 (598)
++.+.+.+|..+.+.|+|.+|+..+++.++..|.+.
T Consensus 226 --~iral~lLA~~afe~g~~~~A~~~Wq~lL~~lp~~~ 261 (287)
T COG4235 226 --NIRALSLLAFAAFEQGDYAEAAAAWQMLLDLLPADD 261 (287)
T ss_pred --cHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCCCCC
Confidence 999999999999999999999999999999998744
No 82
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=98.22 E-value=3.8e-06 Score=69.42 Aligned_cols=70 Identities=17% Similarity=0.062 Sum_probs=46.1
Q ss_pred HHHHHHHHHHHHHHHcCChHHHHHHHHHHHHhC---CCCCc-CHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHh
Q 007571 425 ERVVLYSNRAQCHLLMQQPLAAISDATRALCLH---NPLNR-HAKSLWRRAQAYDMLALAKESLLDAILFINEC 494 (598)
Q Consensus 425 ~~a~ly~NRA~cylKLgdyeeAI~D~~kALeLd---P~~~~-~~KAyyRRAqAy~~LGdy~EAl~d~~kALel~ 494 (598)
..+.+|.|+|.+|..+|+|++|+..+++|+++. ++..+ ...+++++|.++..+|++++|+..+++++++.
T Consensus 3 ~~a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i~ 76 (78)
T PF13424_consen 3 DTANAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALDIF 76 (78)
T ss_dssp HHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhh
Confidence 346677777777777777777777777777551 11000 35677777777777777777777777777664
No 83
>PLN02789 farnesyltranstransferase
Probab=98.22 E-value=1.9e-05 Score=83.86 Aligned_cols=91 Identities=11% Similarity=0.017 Sum_probs=84.3
Q ss_pred HHHcCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHHHcC-ChHHHHHHHHHHHHhCCCCCcCHHHHHHHHHHHHH
Q 007571 398 LFSAGNISGAASKYSEALALCPMRSKKERVVLYSNRAQCHLLMQ-QPLAAISDATRALCLHNPLNRHAKSLWRRAQAYDM 476 (598)
Q Consensus 398 lfk~GdY~eAIe~YskALel~P~~~~~~~a~ly~NRA~cylKLg-dyeeAI~D~~kALeLdP~~~~~~KAyyRRAqAy~~ 476 (598)
+...+.+++|+..++++|+++|.+ ..+|.+|+.++.+++ ++++++..++++++.+|+ +..+++.|+.++..
T Consensus 47 l~~~e~serAL~lt~~aI~lnP~~-----ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npk---nyqaW~~R~~~l~~ 118 (320)
T PLN02789 47 YASDERSPRALDLTADVIRLNPGN-----YTVWHFRRLCLEALDADLEEELDFAEDVAEDNPK---NYQIWHHRRWLAEK 118 (320)
T ss_pred HHcCCCCHHHHHHHHHHHHHCchh-----HHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCc---chHHhHHHHHHHHH
Confidence 456789999999999999999999 999999999999999 689999999999999999 99999999999999
Q ss_pred hhcH--HHHHHHHHHHHHHhcc
Q 007571 477 LALA--KESLLDAILFINECSQ 496 (598)
Q Consensus 477 LGdy--~EAl~d~~kALel~~k 496 (598)
+|+. ++++..+.++++..++
T Consensus 119 l~~~~~~~el~~~~kal~~dpk 140 (320)
T PLN02789 119 LGPDAANKELEFTRKILSLDAK 140 (320)
T ss_pred cCchhhHHHHHHHHHHHHhCcc
Confidence 9984 7888889999999776
No 84
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.22 E-value=1.8e-05 Score=86.45 Aligned_cols=102 Identities=17% Similarity=0.106 Sum_probs=86.3
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCcCHH
Q 007571 386 AAALVVKLEGNSLFSAGNISGAASKYSEALALCPMRSKKERVVLYSNRAQCHLLMQQPLAAISDATRALCLHNPLNRHAK 465 (598)
Q Consensus 386 ~~A~~lKeeGN~lfk~GdY~eAIe~YskALel~P~~~~~~~a~ly~NRA~cylKLgdyeeAI~D~~kALeLdP~~~~~~K 465 (598)
+....+--.|-++...++-..||+.|..|++++|.+ ..+|+-+|++|--|+-+.=|+-.+.+|+++.|+ ...
T Consensus 362 ~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~p~D-----yRAWYGLGQaYeim~Mh~YaLyYfqkA~~~kPn---DsR 433 (559)
T KOG1155|consen 362 KYLSAWTLMGHEYVEMKNTHAAIESYRRAVDINPRD-----YRAWYGLGQAYEIMKMHFYALYYFQKALELKPN---DSR 433 (559)
T ss_pred chhHHHHHhhHHHHHhcccHHHHHHHHHHHhcCchh-----HHHHhhhhHHHHHhcchHHHHHHHHHHHhcCCC---chH
Confidence 356667788999999999999999999999999998 788888888888888888888888888888888 788
Q ss_pred HHHHHHHHHHHhhcHHHHHHHHHHHHHHhc
Q 007571 466 SLWRRAQAYDMLALAKESLLDAILFINECS 495 (598)
Q Consensus 466 AyyRRAqAy~~LGdy~EAl~d~~kALel~~ 495 (598)
.+.-+|+||.++++.++|+++|..++....
T Consensus 434 lw~aLG~CY~kl~~~~eAiKCykrai~~~d 463 (559)
T KOG1155|consen 434 LWVALGECYEKLNRLEEAIKCYKRAILLGD 463 (559)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHhccc
Confidence 888888888888888888888888887654
No 85
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.22 E-value=5.9e-06 Score=91.72 Aligned_cols=106 Identities=14% Similarity=0.047 Sum_probs=91.2
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCchH--HHHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCcCHH
Q 007571 388 ALVVKLEGNSLFSAGNISGAASKYSEALALCPMRSKK--ERVVLYSNRAQCHLLMQQPLAAISDATRALCLHNPLNRHAK 465 (598)
Q Consensus 388 A~~lKeeGN~lfk~GdY~eAIe~YskALel~P~~~~~--~~a~ly~NRA~cylKLgdyeeAI~D~~kALeLdP~~~~~~K 465 (598)
...+++.|-..|+.+.|.+|+..|.+++...+...++ .-...++|+|.+|.|+++|++||..+++||.+.|. ++.
T Consensus 414 plv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l~~k---~~~ 490 (611)
T KOG1173|consen 414 PLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQKALLLSPK---DAS 490 (611)
T ss_pred chhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHHHHHHHHcCCC---chh
Confidence 3456778888888888888888888888554432111 23567999999999999999999999999999999 999
Q ss_pred HHHHHHHHHHHhhcHHHHHHHHHHHHHHhcc
Q 007571 466 SLWRRAQAYDMLALAKESLLDAILFINECSQ 496 (598)
Q Consensus 466 AyyRRAqAy~~LGdy~EAl~d~~kALel~~k 496 (598)
.|--.|.+|..+|+++.|+..|.++|-+.|.
T Consensus 491 ~~asig~iy~llgnld~Aid~fhKaL~l~p~ 521 (611)
T KOG1173|consen 491 THASIGYIYHLLGNLDKAIDHFHKALALKPD 521 (611)
T ss_pred HHHHHHHHHHHhcChHHHHHHHHHHHhcCCc
Confidence 9999999999999999999999999999876
No 86
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=98.22 E-value=1e-05 Score=86.82 Aligned_cols=85 Identities=13% Similarity=0.108 Sum_probs=79.0
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCcCHHH
Q 007571 387 AALVVKLEGNSLFSAGNISGAASKYSEALALCPMRSKKERVVLYSNRAQCHLLMQQPLAAISDATRALCLHNPLNRHAKS 466 (598)
Q Consensus 387 ~A~~lKeeGN~lfk~GdY~eAIe~YskALel~P~~~~~~~a~ly~NRA~cylKLgdyeeAI~D~~kALeLdP~~~~~~KA 466 (598)
.+..+...|..+++.|+|++|+..|.+||.++|.+ +.+|.++|.+|+.+|+|++|+..++++++++|+ +..+
T Consensus 35 ~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~-----~~a~~~lg~~~~~lg~~~eA~~~~~~al~l~P~---~~~~ 106 (356)
T PLN03088 35 NAELYADRAQANIKLGNFTEAVADANKAIELDPSL-----AKAYLRKGTACMKLEEYQTAKAALEKGASLAPG---DSRF 106 (356)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCC-----HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCC---CHHH
Confidence 45678899999999999999999999999999998 999999999999999999999999999999999 9999
Q ss_pred HHHHHHHHHHhhc
Q 007571 467 LWRRAQAYDMLAL 479 (598)
Q Consensus 467 yyRRAqAy~~LGd 479 (598)
...++.+...+..
T Consensus 107 ~~~l~~~~~kl~~ 119 (356)
T PLN03088 107 TKLIKECDEKIAE 119 (356)
T ss_pred HHHHHHHHHHHHh
Confidence 9988888777744
No 87
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=98.21 E-value=4.9e-06 Score=67.67 Aligned_cols=60 Identities=22% Similarity=0.105 Sum_probs=57.8
Q ss_pred HHHHHHcCChHHHHHHHHHHHHhCCCCCcCHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHhcc
Q 007571 434 AQCHLLMQQPLAAISDATRALCLHNPLNRHAKSLWRRAQAYDMLALAKESLLDAILFINECSQ 496 (598)
Q Consensus 434 A~cylKLgdyeeAI~D~~kALeLdP~~~~~~KAyyRRAqAy~~LGdy~EAl~d~~kALel~~k 496 (598)
...|+..++|++|+..+++++.++|+ ++.+++.+|.++..+|++.+|+.+|.++++..|+
T Consensus 2 ~~~~~~~~~~~~A~~~~~~~l~~~p~---~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~ 61 (73)
T PF13371_consen 2 KQIYLQQEDYEEALEVLERALELDPD---DPELWLQRARCLFQLGRYEEALEDLERALELSPD 61 (73)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHhCcc---cchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCC
Confidence 56889999999999999999999999 9999999999999999999999999999999886
No 88
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=98.16 E-value=1.3e-05 Score=87.95 Aligned_cols=69 Identities=10% Similarity=-0.069 Sum_probs=65.7
Q ss_pred hCCCCchHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCcCHHH---HHHHHHHHHHhhcHHHHHHHHHHHHHH
Q 007571 417 LCPMRSKKERVVLYSNRAQCHLLMQQPLAAISDATRALCLHNPLNRHAKS---LWRRAQAYDMLALAKESLLDAILFINE 493 (598)
Q Consensus 417 l~P~~~~~~~a~ly~NRA~cylKLgdyeeAI~D~~kALeLdP~~~~~~KA---yyRRAqAy~~LGdy~EAl~d~~kALel 493 (598)
.+|+. +..++|+|.+|+++|+|++|+..|++||+++|+ +..+ ||++|.+|..+|++++|+.+|++|++.
T Consensus 70 ~dP~~-----a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd---~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 70 ADVKT-----AEDAVNLGLSLFSKGRVKDALAQFETALELNPN---PDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CCCCC-----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC---chHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 47887 999999999999999999999999999999999 8855 999999999999999999999999997
No 89
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=98.12 E-value=1.9e-05 Score=65.27 Aligned_cols=70 Identities=16% Similarity=0.110 Sum_probs=61.0
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---CCCchHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHh
Q 007571 386 AAALVVKLEGNSLFSAGNISGAASKYSEALALC---PMRSKKERVVLYSNRAQCHLLMQQPLAAISDATRALCL 456 (598)
Q Consensus 386 ~~A~~lKeeGN~lfk~GdY~eAIe~YskALel~---P~~~~~~~a~ly~NRA~cylKLgdyeeAI~D~~kALeL 456 (598)
..+..+...|..++..|+|++|+..|.+|+++. +. .....+.++.|+|.||..+|++++|+..+.+|+++
T Consensus 3 ~~a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~-~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i 75 (78)
T PF13424_consen 3 DTANAYNNLARVYRELGRYDEALDYYEKALDIEEQLGD-DHPDTANTLNNLGECYYRLGDYEEALEYYQKALDI 75 (78)
T ss_dssp HHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTT-HHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 457889999999999999999999999999873 22 23456999999999999999999999999999986
No 90
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=98.11 E-value=6.5e-05 Score=69.10 Aligned_cols=101 Identities=19% Similarity=-0.068 Sum_probs=86.6
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCcCHHHHHH
Q 007571 390 VVKLEGNSLFSAGNISGAASKYSEALALCPMRSKKERVVLYSNRAQCHLLMQQPLAAISDATRALCLHNPLNRHAKSLWR 469 (598)
Q Consensus 390 ~lKeeGN~lfk~GdY~eAIe~YskALel~P~~~~~~~a~ly~NRA~cylKLgdyeeAI~D~~kALeLdP~~~~~~KAyyR 469 (598)
...+.|..+-..|+.++|+..|.+|+...... ..+..++.++|.++..+|++++|+...++++.-.|+...+.....-
T Consensus 3 ~~~~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~--~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f 80 (120)
T PF12688_consen 3 ALYELAWAHDSLGREEEAIPLYRRALAAGLSG--ADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVF 80 (120)
T ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCc--hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHH
Confidence 46778888999999999999999999976553 4567899999999999999999999999999987764335566666
Q ss_pred HHHHHHHhhcHHHHHHHHHHHHH
Q 007571 470 RAQAYDMLALAKESLLDAILFIN 492 (598)
Q Consensus 470 RAqAy~~LGdy~EAl~d~~kALe 492 (598)
.+.++..+|++++|+..+..++-
T Consensus 81 ~Al~L~~~gr~~eAl~~~l~~la 103 (120)
T PF12688_consen 81 LALALYNLGRPKEALEWLLEALA 103 (120)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHH
Confidence 88999999999999998877764
No 91
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=98.09 E-value=6.8e-05 Score=59.15 Aligned_cols=65 Identities=20% Similarity=0.083 Sum_probs=61.7
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCcCHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHhcc
Q 007571 429 LYSNRAQCHLLMQQPLAAISDATRALCLHNPLNRHAKSLWRRAQAYDMLALAKESLLDAILFINECSQ 496 (598)
Q Consensus 429 ly~NRA~cylKLgdyeeAI~D~~kALeLdP~~~~~~KAyyRRAqAy~~LGdy~EAl~d~~kALel~~k 496 (598)
++.++|.+++..|++++|+..++++++..|+ +..+++.+|.++...+++++|+..|.++++..+.
T Consensus 2 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~ 66 (100)
T cd00189 2 ALLNLGNLYYKLGDYDEALEYYEKALELDPD---NADAYYNLAAAYYKLGKYEEALEDYEKALELDPD 66 (100)
T ss_pred HHHHHHHHHHHHhcHHHHHHHHHHHHhcCCc---cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCc
Confidence 5789999999999999999999999999999 8899999999999999999999999999998765
No 92
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=98.07 E-value=5.2e-05 Score=78.25 Aligned_cols=107 Identities=10% Similarity=0.025 Sum_probs=97.8
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCcCHHHHHH
Q 007571 390 VVKLEGNSLFSAGNISGAASKYSEALALCPMRSKKERVVLYSNRAQCHLLMQQPLAAISDATRALCLHNPLNRHAKSLWR 469 (598)
Q Consensus 390 ~lKeeGN~lfk~GdY~eAIe~YskALel~P~~~~~~~a~ly~NRA~cylKLgdyeeAI~D~~kALeLdP~~~~~~KAyyR 469 (598)
.+.+.+-.+++.|+|..|...|.+-|+..|+. ...+.+++-++.+++.+|+|++|...+..+++-.|+....+.+++.
T Consensus 143 ~~Y~~A~~~~ksgdy~~A~~~F~~fi~~YP~s--~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallK 220 (262)
T COG1729 143 KLYNAALDLYKSGDYAEAEQAFQAFIKKYPNS--TYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLK 220 (262)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC--cccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHH
Confidence 38889999999999999999999999999986 4557888999999999999999999999999999885446788999
Q ss_pred HHHHHHHhhcHHHHHHHHHHHHHHhccCC
Q 007571 470 RAQAYDMLALAKESLLDAILFINECSQSN 498 (598)
Q Consensus 470 RAqAy~~LGdy~EAl~d~~kALel~~k~~ 498 (598)
+|.+...+|+.++|...|.++++..|+..
T Consensus 221 lg~~~~~l~~~d~A~atl~qv~k~YP~t~ 249 (262)
T COG1729 221 LGVSLGRLGNTDEACATLQQVIKRYPGTD 249 (262)
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHCCCCH
Confidence 99999999999999999999999999743
No 93
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=98.07 E-value=3.5e-05 Score=77.61 Aligned_cols=131 Identities=18% Similarity=0.052 Sum_probs=111.4
Q ss_pred CCCccHHHHHHHHHHHhHhhHHhhcCChHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCchHHHHHHH
Q 007571 351 SPSNRSKEQIEELLNSRQRLKWEKNMLKEDLHIKQAAALVVKLEGNSLFSAGNISGAASKYSEALALCPMRSKKERVVLY 430 (598)
Q Consensus 351 ip~~~tl~~~~ELl~~kek~k~e~~ms~eElee~~~~A~~lKeeGN~lfk~GdY~eAIe~YskALel~P~~~~~~~a~ly 430 (598)
+|-+.++..++.+.... ..-....|++++ .|.-+.++|+-+=.-|-...|--.|++++.+.|.- +..+
T Consensus 35 ~~~qp~lqqEV~iarls-qlL~~~~l~~ee------RA~l~fERGvlYDSlGL~~LAR~DftQaLai~P~m-----~~vf 102 (297)
T COG4785 35 VPLQPTLQQEVILARMS-QILASRALTDEE------RAQLLFERGVLYDSLGLRALARNDFSQALAIRPDM-----PEVF 102 (297)
T ss_pred ccCCccHHHHHHHHHHH-HHHHhccCChHH------HHHHHHHhcchhhhhhHHHHHhhhhhhhhhcCCCc-----HHHH
Confidence 34444455555554432 223345667654 58889999999999999999999999999999998 9999
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHhCCCCCcCHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHhcc
Q 007571 431 SNRAQCHLLMQQPLAAISDATRALCLHNPLNRHAKSLWRRAQAYDMLALAKESLLDAILFINECSQ 496 (598)
Q Consensus 431 ~NRA~cylKLgdyeeAI~D~~kALeLdP~~~~~~KAyyRRAqAy~~LGdy~EAl~d~~kALel~~k 496 (598)
+-+|.-+..-|+|+.|...++.++++||. +--++.+||.+++.-|+|.-|..|+.+..+..|+
T Consensus 103 NyLG~Yl~~a~~fdaa~eaFds~~ELDp~---y~Ya~lNRgi~~YY~gR~~LAq~d~~~fYQ~D~~ 165 (297)
T COG4785 103 NYLGIYLTQAGNFDAAYEAFDSVLELDPT---YNYAHLNRGIALYYGGRYKLAQDDLLAFYQDDPN 165 (297)
T ss_pred HHHHHHHHhcccchHHHHHhhhHhccCCc---chHHHhccceeeeecCchHhhHHHHHHHHhcCCC
Confidence 99999999999999999999999999999 9999999999999999999999999999988775
No 94
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=98.05 E-value=0.00013 Score=76.22 Aligned_cols=103 Identities=20% Similarity=0.061 Sum_probs=86.9
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCch--------------------------------HHHHHHHHHHHHHHH
Q 007571 391 VKLEGNSLFSAGNISGAASKYSEALALCPMRSK--------------------------------KERVVLYSNRAQCHL 438 (598)
Q Consensus 391 lKeeGN~lfk~GdY~eAIe~YskALel~P~~~~--------------------------------~~~a~ly~NRA~cyl 438 (598)
..-+|..++..|++++|+..+.++++..|.+.. ......+.++|.++.
T Consensus 46 ~~~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~ 125 (355)
T cd05804 46 AHVEALSAWIAGDLPKALALLEQLLDDYPRDLLALKLHLGAFGLGDFSGMRDHVARVLPLWAPENPDYWYLLGMLAFGLE 125 (355)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHhHHHHHhcccccCchhHHHHHhccCcCCCCcHHHHHHHHHHHH
Confidence 445677788888888888888888888776521 011345668889999
Q ss_pred HcCChHHHHHHHHHHHHhCCCCCcCHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHhcc
Q 007571 439 LMQQPLAAISDATRALCLHNPLNRHAKSLWRRAQAYDMLALAKESLLDAILFINECSQ 496 (598)
Q Consensus 439 KLgdyeeAI~D~~kALeLdP~~~~~~KAyyRRAqAy~~LGdy~EAl~d~~kALel~~k 496 (598)
.+|++++|+..++++++++|+ ++.++..+|.+++..|++++|+..+.++++..+.
T Consensus 126 ~~G~~~~A~~~~~~al~~~p~---~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~ 180 (355)
T cd05804 126 EAGQYDRAEEAARRALELNPD---DAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDC 180 (355)
T ss_pred HcCCHHHHHHHHHHHHhhCCC---CcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCC
Confidence 999999999999999999999 8999999999999999999999999999998764
No 95
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.04 E-value=2.3e-05 Score=81.78 Aligned_cols=101 Identities=16% Similarity=0.039 Sum_probs=81.2
Q ss_pred HHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCcCHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHhccCCCCchhhc
Q 007571 426 RVVLYSNRAQCHLLMQQPLAAISDATRALCLHNPLNRHAKSLWRRAQAYDMLALAKESLLDAILFINECSQSNDPDLSLR 505 (598)
Q Consensus 426 ~a~ly~NRA~cylKLgdyeeAI~D~~kALeLdP~~~~~~KAyyRRAqAy~~LGdy~EAl~d~~kALel~~k~~d~~~~~r 505 (598)
.+.-+-+-|.=+++-++|.+|+..|++||+++|+ ++--|-+||.||.+||.|+.|++|++++|.+.|..
T Consensus 80 ~AE~LK~eGN~~m~~~~Y~eAv~kY~~AI~l~P~---nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~y-------- 148 (304)
T KOG0553|consen 80 LAESLKNEGNKLMKNKDYQEAVDKYTEAIELDPT---NAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHY-------- 148 (304)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCC---cchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHH--------
Confidence 4555667788889999999999999999999999 99999999999999999999999999999997752
Q ss_pred cCChHHHHHHHHHHHHHHHHHHHHHHHhcC-CCcCCCC
Q 007571 506 QNKVPDYAERLVKKQMRAAWLFREAAIKHG-GVHGEGN 542 (598)
Q Consensus 506 ~~Ki~~~ierlL~Kqk~a~~~f~eA~~k~~-~i~~d~~ 542 (598)
.....-|..+......+++|...|. +++.|-+
T Consensus 149 -----skay~RLG~A~~~~gk~~~A~~aykKaLeldP~ 181 (304)
T KOG0553|consen 149 -----SKAYGRLGLAYLALGKYEEAIEAYKKALELDPD 181 (304)
T ss_pred -----HHHHHHHHHHHHccCcHHHHHHHHHhhhccCCC
Confidence 2344455666667777777776655 3444443
No 96
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=98.03 E-value=5.7e-05 Score=78.80 Aligned_cols=103 Identities=15% Similarity=-0.019 Sum_probs=89.9
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC-CcCHHH
Q 007571 388 ALVVKLEGNSLFSAGNISGAASKYSEALALCPMRSKKERVVLYSNRAQCHLLMQQPLAAISDATRALCLHNPL-NRHAKS 466 (598)
Q Consensus 388 A~~lKeeGN~lfk~GdY~eAIe~YskALel~P~~~~~~~a~ly~NRA~cylKLgdyeeAI~D~~kALeLdP~~-~~~~KA 466 (598)
...+...|..+...|+|.+|+..|.+++++.|.+ ..++.++|.+|...|++++|+..+.+++...|.. ......
T Consensus 114 ~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~p~~-----~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~ 188 (355)
T cd05804 114 WYLLGMLAFGLEEAGQYDRAEEAARRALELNPDD-----AWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHN 188 (355)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC-----cHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHH
Confidence 4456678889999999999999999999999998 8899999999999999999999999999998741 113456
Q ss_pred HHHHHHHHHHhhcHHHHHHHHHHHHHHhc
Q 007571 467 LWRRAQAYDMLALAKESLLDAILFINECS 495 (598)
Q Consensus 467 yyRRAqAy~~LGdy~EAl~d~~kALel~~ 495 (598)
|+.+|.++...|++++|+..|.+++...+
T Consensus 189 ~~~la~~~~~~G~~~~A~~~~~~~~~~~~ 217 (355)
T cd05804 189 WWHLALFYLERGDYEAALAIYDTHIAPSA 217 (355)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHhcccc
Confidence 78899999999999999999999975543
No 97
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=97.95 E-value=0.00012 Score=74.19 Aligned_cols=104 Identities=21% Similarity=0.082 Sum_probs=71.2
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCcCHH
Q 007571 386 AAALVVKLEGNSLFSAGNISGAASKYSEALALCPMRSKKERVVLYSNRAQCHLLMQQPLAAISDATRALCLHNPLNRHAK 465 (598)
Q Consensus 386 ~~A~~lKeeGN~lfk~GdY~eAIe~YskALel~P~~~~~~~a~ly~NRA~cylKLgdyeeAI~D~~kALeLdP~~~~~~K 465 (598)
+.+..+.+-|--++.+|+|++|...|++|+. +|.. ...+..|.|.+.|.+++|+++.|..+++++|+++|+ ++-
T Consensus 101 ~~GdVLNNYG~FLC~qg~~~eA~q~F~~Al~-~P~Y--~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~---~~~ 174 (250)
T COG3063 101 NNGDVLNNYGAFLCAQGRPEEAMQQFERALA-DPAY--GEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQ---FPP 174 (250)
T ss_pred CccchhhhhhHHHHhCCChHHHHHHHHHHHh-CCCC--CCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcC---CCh
Confidence 4455566667777777777777777777774 3433 122666777777777777777777777777777777 777
Q ss_pred HHHHHHHHHHHhhcHHHHHHHHHHHHHHhc
Q 007571 466 SLWRRAQAYDMLALAKESLLDAILFINECS 495 (598)
Q Consensus 466 AyyRRAqAy~~LGdy~EAl~d~~kALel~~ 495 (598)
+...+++.++.-|+|-.|...+++.....+
T Consensus 175 ~~l~~a~~~~~~~~y~~Ar~~~~~~~~~~~ 204 (250)
T COG3063 175 ALLELARLHYKAGDYAPARLYLERYQQRGG 204 (250)
T ss_pred HHHHHHHHHHhcccchHHHHHHHHHHhccc
Confidence 777777777777777777766666655544
No 98
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=97.95 E-value=0.00053 Score=63.77 Aligned_cols=103 Identities=13% Similarity=-0.038 Sum_probs=88.7
Q ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCcCH
Q 007571 385 QAAALVVKLEGNSLFSAGNISGAASKYSEALALCPMRSKKERVVLYSNRAQCHLLMQQPLAAISDATRALCLHNPLNRHA 464 (598)
Q Consensus 385 ~~~A~~lKeeGN~lfk~GdY~eAIe~YskALel~P~~~~~~~a~ly~NRA~cylKLgdyeeAI~D~~kALeLdP~~~~~~ 464 (598)
...+..........+..+++..+...+.+.+.-.|.. .....+...+|.+++..|+|++|+..+.+++...|++....
T Consensus 8 ~~~a~~~y~~~~~~~~~~~~~~~~~~~~~l~~~~~~s--~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~ 85 (145)
T PF09976_consen 8 AEQASALYEQALQALQAGDPAKAEAAAEQLAKDYPSS--PYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKP 85 (145)
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCC--hHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHH
Confidence 4567778888888889999999999999999988875 45567788899999999999999999999999887743346
Q ss_pred HHHHHHHHHHHHhhcHHHHHHHHHH
Q 007571 465 KSLWRRAQAYDMLALAKESLLDAIL 489 (598)
Q Consensus 465 KAyyRRAqAy~~LGdy~EAl~d~~k 489 (598)
.+.+|+|.+++..|+|++|+..+..
T Consensus 86 ~a~l~LA~~~~~~~~~d~Al~~L~~ 110 (145)
T PF09976_consen 86 LARLRLARILLQQGQYDEALATLQQ 110 (145)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHh
Confidence 7999999999999999999888754
No 99
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=97.94 E-value=0.00021 Score=80.20 Aligned_cols=148 Identities=15% Similarity=-0.019 Sum_probs=108.8
Q ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC---CchHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC--
Q 007571 385 QAAALVVKLEGNSLFSAGNISGAASKYSEALALCPM---RSKKERVVLYSNRAQCHLLMQQPLAAISDATRALCLHNP-- 459 (598)
Q Consensus 385 ~~~A~~lKeeGN~lfk~GdY~eAIe~YskALel~P~---~~~~~~a~ly~NRA~cylKLgdyeeAI~D~~kALeLdP~-- 459 (598)
+..+..++.-|+.+...++|.+|+..|.+|+.+-.. ...+..+..+.|+|..|.+.|+|++|...|++|+++--.
T Consensus 238 l~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~ 317 (508)
T KOG1840|consen 238 LVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLL 317 (508)
T ss_pred HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhh
Confidence 456677778999999999999999999999987432 123567999999999999999999999999999987321
Q ss_pred -C--CcCHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHhccCCCCch---hhccCChHHHHHHHHHHHHHHHHHHHHHHHh
Q 007571 460 -L--NRHAKSLWRRAQAYDMLALAKESLLDAILFINECSQSNDPDL---SLRQNKVPDYAERLVKKQMRAAWLFREAAIK 533 (598)
Q Consensus 460 -~--~~~~KAyyRRAqAy~~LGdy~EAl~d~~kALel~~k~~d~~~---~~r~~Ki~~~ierlL~Kqk~a~~~f~eA~~k 533 (598)
. ..-...+...+.++..++++++|+..+++++++..+.. ... ..+...-...+.....|.+++.-.+++|..+
T Consensus 318 ~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~-g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~ 396 (508)
T KOG1840|consen 318 GASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAP-GEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQI 396 (508)
T ss_pred ccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhc-cccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHH
Confidence 0 00456788889999999999999999999999887321 111 0000012223333445666777777777776
No 100
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=97.94 E-value=4.8e-05 Score=72.16 Aligned_cols=100 Identities=10% Similarity=-0.027 Sum_probs=82.9
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCcCHHHHHHHHHH
Q 007571 394 EGNSLFSAGNISGAASKYSEALALCPMRSKKERVVLYSNRAQCHLLMQQPLAAISDATRALCLHNPLNRHAKSLWRRAQA 473 (598)
Q Consensus 394 eGN~lfk~GdY~eAIe~YskALel~P~~~~~~~a~ly~NRA~cylKLgdyeeAI~D~~kALeLdP~~~~~~KAyyRRAqA 473 (598)
+.|.+|-.+.|..+...+...++..+. ...+.+|.+.|.++..+|+|++|+..+++|+.+.|+....+.+++.+|.+
T Consensus 5 ~~~~~~~~~~~~~~~~~l~~~~~~~~~---~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~ 81 (168)
T CHL00033 5 QRNDNFIDKTFTIVADILLRILPTTSG---EKEAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLI 81 (168)
T ss_pred cccccccccccccchhhhhHhccCCch---hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHH
Confidence 356678888888888888666554443 35688999999999999999999999999999977621134589999999
Q ss_pred HHHhhcHHHHHHHHHHHHHHhcc
Q 007571 474 YDMLALAKESLLDAILFINECSQ 496 (598)
Q Consensus 474 y~~LGdy~EAl~d~~kALel~~k 496 (598)
+..+|++++|+..|.++++..+.
T Consensus 82 ~~~~g~~~eA~~~~~~Al~~~~~ 104 (168)
T CHL00033 82 HTSNGEHTKALEYYFQALERNPF 104 (168)
T ss_pred HHHcCCHHHHHHHHHHHHHhCcC
Confidence 99999999999999999998664
No 101
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=97.93 E-value=0.00017 Score=83.87 Aligned_cols=102 Identities=15% Similarity=0.128 Sum_probs=86.6
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHH----------------------------
Q 007571 387 AALVVKLEGNSLFSAGNISGAASKYSEALALCPMRSKKERVVLYSNRAQCHL---------------------------- 438 (598)
Q Consensus 387 ~A~~lKeeGN~lfk~GdY~eAIe~YskALel~P~~~~~~~a~ly~NRA~cyl---------------------------- 438 (598)
.+..+..++|.+|-.|++++|.+...++|+.+|.. ..+|.-+|.||-
T Consensus 138 ~l~~ll~eAN~lfarg~~eeA~~i~~EvIkqdp~~-----~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~ 212 (895)
T KOG2076|consen 138 ELRQLLGEANNLFARGDLEEAEEILMEVIKQDPRN-----PIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKR 212 (895)
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCccc-----hhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHHHH
Confidence 47788899999999999999999999999999987 444444444444
Q ss_pred ------HcCChHHHHHHHHHHHHhCCCCCcCHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHhcc
Q 007571 439 ------LMQQPLAAISDATRALCLHNPLNRHAKSLWRRAQAYDMLALAKESLLDAILFINECSQ 496 (598)
Q Consensus 439 ------KLgdyeeAI~D~~kALeLdP~~~~~~KAyyRRAqAy~~LGdy~EAl~d~~kALel~~k 496 (598)
++|.+..|+-.|++||+.+|. +.+.+|+|+..|..+|++..|+..|.+.++.+|.
T Consensus 213 ladls~~~~~i~qA~~cy~rAI~~~p~---n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~ 273 (895)
T KOG2076|consen 213 LADLSEQLGNINQARYCYSRAIQANPS---NWELIYERSSLYQKTGDLKRAMETFLQLLQLDPP 273 (895)
T ss_pred HHHHHHhcccHHHHHHHHHHHHhcCCc---chHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCc
Confidence 455678888899999999999 9999999999999999999999999999999873
No 102
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=97.90 E-value=0.00021 Score=61.99 Aligned_cols=71 Identities=13% Similarity=0.005 Sum_probs=63.1
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCcCHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHhccC
Q 007571 427 VVLYSNRAQCHLLMQQPLAAISDATRALCLHNPLNRHAKSLWRRAQAYDMLALAKESLLDAILFINECSQS 497 (598)
Q Consensus 427 a~ly~NRA~cylKLgdyeeAI~D~~kALeLdP~~~~~~KAyyRRAqAy~~LGdy~EAl~d~~kALel~~k~ 497 (598)
...+++.|..+++.|++++|+..+.+++..+|+......+++.+|.++...|++++|+..|..++...|+.
T Consensus 2 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~ 72 (119)
T TIGR02795 2 EEAYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKS 72 (119)
T ss_pred cHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCC
Confidence 35688999999999999999999999999999821126899999999999999999999999999998763
No 103
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=97.88 E-value=2.7e-05 Score=62.42 Aligned_cols=57 Identities=16% Similarity=-0.046 Sum_probs=52.7
Q ss_pred HHHcCChHHHHHHHHHHHHhCCCCCcCHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHhcc
Q 007571 437 HLLMQQPLAAISDATRALCLHNPLNRHAKSLWRRAQAYDMLALAKESLLDAILFINECSQ 496 (598)
Q Consensus 437 ylKLgdyeeAI~D~~kALeLdP~~~~~~KAyyRRAqAy~~LGdy~EAl~d~~kALel~~k 496 (598)
+++.|+|++|+..+++++..+|+ +..+++.+|.+|...|++++|...+.+++...|+
T Consensus 1 ll~~~~~~~A~~~~~~~l~~~p~---~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~ 57 (68)
T PF14559_consen 1 LLKQGDYDEAIELLEKALQRNPD---NPEARLLLAQCYLKQGQYDEAEELLERLLKQDPD 57 (68)
T ss_dssp HHHTTHHHHHHHHHHHHHHHTTT---SHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTT
T ss_pred ChhccCHHHHHHHHHHHHHHCCC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcC
Confidence 36789999999999999999999 9999999999999999999999999999988775
No 104
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=97.87 E-value=0.00023 Score=78.31 Aligned_cols=100 Identities=28% Similarity=0.206 Sum_probs=89.6
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCcCHHHH
Q 007571 388 ALVVKLEGNSLFSAGNISGAASKYSEALALCPMRSKKERVVLYSNRAQCHLLMQQPLAAISDATRALCLHNPLNRHAKSL 467 (598)
Q Consensus 388 A~~lKeeGN~lfk~GdY~eAIe~YskALel~P~~~~~~~a~ly~NRA~cylKLgdyeeAI~D~~kALeLdP~~~~~~KAy 467 (598)
.--+--.|..+++.+++.+|++.+.+++.++|.. ..+..|+|.+|+++|++.+|+....+.+.-+|+ ++..|
T Consensus 340 ~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~-----~~l~~~~a~all~~g~~~eai~~L~~~~~~~p~---dp~~w 411 (484)
T COG4783 340 PYYLELAGDILLEANKAKEAIERLKKALALDPNS-----PLLQLNLAQALLKGGKPQEAIRILNRYLFNDPE---DPNGW 411 (484)
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCc-----cHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCC---CchHH
Confidence 3344556778899999999999999999999998 899999999999999999999999999999999 99999
Q ss_pred HHHHHHHHHhhcHHHHHHHHHHHHHHhc
Q 007571 468 WRRAQAYDMLALAKESLLDAILFINECS 495 (598)
Q Consensus 468 yRRAqAy~~LGdy~EAl~d~~kALel~~ 495 (598)
..+|++|..+|+-.+|...+...+.+.-
T Consensus 412 ~~LAqay~~~g~~~~a~~A~AE~~~~~G 439 (484)
T COG4783 412 DLLAQAYAELGNRAEALLARAEGYALAG 439 (484)
T ss_pred HHHHHHHHHhCchHHHHHHHHHHHHhCC
Confidence 9999999999999998888877776643
No 105
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=97.86 E-value=0.00026 Score=72.35 Aligned_cols=133 Identities=13% Similarity=-0.009 Sum_probs=91.5
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCchHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCcCHH
Q 007571 388 ALVVKLEGNSLFSAGNISGAASKYSEALALC--PMRSKKERVVLYSNRAQCHLLMQQPLAAISDATRALCLHNPLNRHAK 465 (598)
Q Consensus 388 A~~lKeeGN~lfk~GdY~eAIe~YskALel~--P~~~~~~~a~ly~NRA~cylKLgdyeeAI~D~~kALeLdP~~~~~~K 465 (598)
...+......++..++++++...+.++.... |.+ +.+|.-+|.++.+.|++++|+.++.+||+++|+ +..
T Consensus 110 ~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~-----~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~P~---~~~ 181 (280)
T PF13429_consen 110 PRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDS-----ARFWLALAEIYEQLGDPDKALRDYRKALELDPD---DPD 181 (280)
T ss_dssp --------H-HHHTT-HHHHHHHHHHHHH-T---T------HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH-TT----HH
T ss_pred cchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCC-----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC---CHH
Confidence 3445555667889999999999999988655 444 888999999999999999999999999999999 999
Q ss_pred HHHHHHHHHHHhhcHHHHHHHHHHHHHHhccCCCCchhhccCChHHHHHHHHHHHHHHHHHHHHHHHhc
Q 007571 466 SLWRRAQAYDMLALAKESLLDAILFINECSQSNDPDLSLRQNKVPDYAERLVKKQMRAAWLFREAAIKH 534 (598)
Q Consensus 466 AyyRRAqAy~~LGdy~EAl~d~~kALel~~k~~d~~~~~r~~Ki~~~ierlL~Kqk~a~~~f~eA~~k~ 534 (598)
+....+.++...|+++++...+....+..+.+.. -......+...+.+...+...++++.+..
T Consensus 182 ~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~~------~~~~la~~~~~lg~~~~Al~~~~~~~~~~ 244 (280)
T PF13429_consen 182 ARNALAWLLIDMGDYDEAREALKRLLKAAPDDPD------LWDALAAAYLQLGRYEEALEYLEKALKLN 244 (280)
T ss_dssp HHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSCC------HCHHHHHHHHHHT-HHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHHH------HHHHHHHHhcccccccccccccccccccc
Confidence 9999999999999999988888888777655221 01122333444455556666666655543
No 106
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=97.86 E-value=0.00012 Score=84.01 Aligned_cols=103 Identities=21% Similarity=0.129 Sum_probs=96.2
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHHHcCChHHHHH--HHHHHHHhCCCCCcC
Q 007571 386 AAALVVKLEGNSLFSAGNISGAASKYSEALALCPMRSKKERVVLYSNRAQCHLLMQQPLAAIS--DATRALCLHNPLNRH 463 (598)
Q Consensus 386 ~~A~~lKeeGN~lfk~GdY~eAIe~YskALel~P~~~~~~~a~ly~NRA~cylKLgdyeeAI~--D~~kALeLdP~~~~~ 463 (598)
--+..+...|..+-.+|+..+|.+.|..|+.++|+. +.+..-+|.|+++.|+..-|.. ....|+++||. +
T Consensus 682 l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~ldP~h-----v~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp~---n 753 (799)
T KOG4162|consen 682 LSASVYYLRGLLLEVKGQLEEAKEAFLVALALDPDH-----VPSMTALAELLLELGSPRLAEKRSLLSDALRLDPL---N 753 (799)
T ss_pred hhHHHHHHhhHHHHHHHhhHHHHHHHHHHHhcCCCC-----cHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCCC---C
Confidence 346678899999999999999999999999999999 8888899999999999888887 99999999999 9
Q ss_pred HHHHHHHHHHHHHhhcHHHHHHHHHHHHHHhcc
Q 007571 464 AKSLWRRAQAYDMLALAKESLLDAILFINECSQ 496 (598)
Q Consensus 464 ~KAyyRRAqAy~~LGdy~EAl~d~~kALel~~k 496 (598)
+++||.+|.++..+|+.++|..+|..++++.+.
T Consensus 754 ~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qLe~S 786 (799)
T KOG4162|consen 754 HEAWYYLGEVFKKLGDSKQAAECFQAALQLEES 786 (799)
T ss_pred HHHHHHHHHHHHHccchHHHHHHHHHHHhhccC
Confidence 999999999999999999999999999999764
No 107
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=97.85 E-value=0.00026 Score=69.48 Aligned_cols=85 Identities=24% Similarity=0.197 Sum_probs=71.2
Q ss_pred HHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHHHcCC----------hHHHHHHHHHHHHhCCCCCcCHHHHHHHHHH
Q 007571 404 ISGAASKYSEALALCPMRSKKERVVLYSNRAQCHLLMQQ----------PLAAISDATRALCLHNPLNRHAKSLWRRAQA 473 (598)
Q Consensus 404 Y~eAIe~YskALel~P~~~~~~~a~ly~NRA~cylKLgd----------yeeAI~D~~kALeLdP~~~~~~KAyyRRAqA 473 (598)
|+.|.+.|..+...+|.+ +..++|-|.+++.+.+ +++|++-+++||.++|+ ...|+|..|.|
T Consensus 7 FE~ark~aea~y~~nP~D-----adnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~P~---~hdAlw~lGnA 78 (186)
T PF06552_consen 7 FEHARKKAEAAYAKNPLD-----ADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKINPN---KHDALWCLGNA 78 (186)
T ss_dssp HHHHHHHHHHHHHH-TT------HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-TT----HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcHh-----HHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcCCc---hHHHHHHHHHH
Confidence 678999999999999999 9999999999988754 57889999999999999 99999999999
Q ss_pred HHHhhc-----------HHHHHHHHHHHHHHhcc
Q 007571 474 YDMLAL-----------AKESLLDAILFINECSQ 496 (598)
Q Consensus 474 y~~LGd-----------y~EAl~d~~kALel~~k 496 (598)
|..++. |+.|...|++|....|+
T Consensus 79 ~ts~A~l~~d~~~A~~~F~kA~~~FqkAv~~~P~ 112 (186)
T PF06552_consen 79 YTSLAFLTPDTAEAEEYFEKATEYFQKAVDEDPN 112 (186)
T ss_dssp HHHHHHH---HHHHHHHHHHHHHHHHHHHHH-TT
T ss_pred HHHHHhhcCChHHHHHHHHHHHHHHHHHHhcCCC
Confidence 999876 77888888888888775
No 108
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=97.84 E-value=0.00042 Score=66.19 Aligned_cols=82 Identities=15% Similarity=0.118 Sum_probs=69.3
Q ss_pred HHhCCCCchHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCcCHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHh
Q 007571 415 LALCPMRSKKERVVLYSNRAQCHLLMQQPLAAISDATRALCLHNPLNRHAKSLWRRAQAYDMLALAKESLLDAILFINEC 494 (598)
Q Consensus 415 Lel~P~~~~~~~a~ly~NRA~cylKLgdyeeAI~D~~kALeLdP~~~~~~KAyyRRAqAy~~LGdy~EAl~d~~kALel~ 494 (598)
..+.|.+.+...+.++.++|..+...|++++|+..+.+++.+.|+......+++.+|.++..+|++++|+..|.++++..
T Consensus 23 ~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 102 (172)
T PRK02603 23 LKILPINKKAKEAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELN 102 (172)
T ss_pred HHHcccccHhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 44444444556688999999999999999999999999999987621135799999999999999999999999999987
Q ss_pred cc
Q 007571 495 SQ 496 (598)
Q Consensus 495 ~k 496 (598)
|+
T Consensus 103 p~ 104 (172)
T PRK02603 103 PK 104 (172)
T ss_pred cc
Confidence 75
No 109
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=97.83 E-value=0.00015 Score=78.49 Aligned_cols=103 Identities=15% Similarity=0.075 Sum_probs=86.9
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHHHcCCh----------------------
Q 007571 386 AAALVVKLEGNSLFSAGNISGAASKYSEALALCPMRSKKERVVLYSNRAQCHLLMQQP---------------------- 443 (598)
Q Consensus 386 ~~A~~lKeeGN~lfk~GdY~eAIe~YskALel~P~~~~~~~a~ly~NRA~cylKLgdy---------------------- 443 (598)
.....+.-+|+.+...|+.++|+..|..|+.+.|.. ..+|--+-.||+..|++
T Consensus 332 r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~Lap~r-----L~~Y~GL~hsYLA~~~~kEA~~~An~~~~~~~~sA~~Lt 406 (564)
T KOG1174|consen 332 RNHEALILKGRLLIALERHTQAVIAFRTAQMLAPYR-----LEIYRGLFHSYLAQKRFKEANALANWTIRLFQNSARSLT 406 (564)
T ss_pred ccchHHHhccHHHHhccchHHHHHHHHHHHhcchhh-----HHHHHHHHHHHHhhchHHHHHHHHHHHHHHhhcchhhhh
Confidence 457788899999999999999999999999999986 66666666666666665
Q ss_pred --------------HHHHHHHHHHHHhCCCCCcCHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHhcc
Q 007571 444 --------------LAAISDATRALCLHNPLNRHAKSLWRRAQAYDMLALAKESLLDAILFINECSQ 496 (598)
Q Consensus 444 --------------eeAI~D~~kALeLdP~~~~~~KAyyRRAqAy~~LGdy~EAl~d~~kALel~~k 496 (598)
++|...++++|.++|. +.+|....|..+..-|.+++++.-+++++...++
T Consensus 407 L~g~~V~~~dp~~rEKAKkf~ek~L~~~P~---Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~~~D 470 (564)
T KOG1174|consen 407 LFGTLVLFPDPRMREKAKKFAEKSLKINPI---YTPAVNLIAELCQVEGPTKDIIKLLEKHLIIFPD 470 (564)
T ss_pred hhcceeeccCchhHHHHHHHHHhhhccCCc---cHHHHHHHHHHHHhhCccchHHHHHHHHHhhccc
Confidence 4555666677777888 8999999999999999999999999999998876
No 110
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=97.82 E-value=9.3e-05 Score=84.46 Aligned_cols=100 Identities=16% Similarity=0.142 Sum_probs=92.0
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCcCHHH
Q 007571 387 AALVVKLEGNSLFSAGNISGAASKYSEALALCPMRSKKERVVLYSNRAQCHLLMQQPLAAISDATRALCLHNPLNRHAKS 466 (598)
Q Consensus 387 ~A~~lKeeGN~lfk~GdY~eAIe~YskALel~P~~~~~~~a~ly~NRA~cylKLgdyeeAI~D~~kALeLdP~~~~~~KA 466 (598)
.+.+..-.|+..+.+++|.+|.++++.+++++|-. ...|++++.|.++++++..|..+|.+++.++|+ +..+
T Consensus 484 sarA~r~~~~~~~~~~~fs~~~~hle~sl~~nplq-----~~~wf~~G~~ALqlek~q~av~aF~rcvtL~Pd---~~ea 555 (777)
T KOG1128|consen 484 SARAQRSLALLILSNKDFSEADKHLERSLEINPLQ-----LGTWFGLGCAALQLEKEQAAVKAFHRCVTLEPD---NAEA 555 (777)
T ss_pred hHHHHHhhccccccchhHHHHHHHHHHHhhcCccc-----hhHHHhccHHHHHHhhhHHHHHHHHHHhhcCCC---chhh
Confidence 34455666777788899999999999999999998 899999999999999999999999999999999 9999
Q ss_pred HHHHHHHHHHhhcHHHHHHHHHHHHHHh
Q 007571 467 LWRRAQAYDMLALAKESLLDAILFINEC 494 (598)
Q Consensus 467 yyRRAqAy~~LGdy~EAl~d~~kALel~ 494 (598)
+.+.+.+|..+++-.+|...+++|++..
T Consensus 556 WnNls~ayi~~~~k~ra~~~l~EAlKcn 583 (777)
T KOG1128|consen 556 WNNLSTAYIRLKKKKRAFRKLKEALKCN 583 (777)
T ss_pred hhhhhHHHHHHhhhHHHHHHHHHHhhcC
Confidence 9999999999999999999999998875
No 111
>PRK14574 hmsH outer membrane protein; Provisional
Probab=97.77 E-value=0.00034 Score=82.86 Aligned_cols=128 Identities=10% Similarity=-0.117 Sum_probs=86.3
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCcCHHHHHHHHH
Q 007571 393 LEGNSLFSAGNISGAASKYSEALALCPMRSKKERVVLYSNRAQCHLLMQQPLAAISDATRALCLHNPLNRHAKSLWRRAQ 472 (598)
Q Consensus 393 eeGN~lfk~GdY~eAIe~YskALel~P~~~~~~~a~ly~NRA~cylKLgdyeeAI~D~~kALeLdP~~~~~~KAyyRRAq 472 (598)
.....+...|++++|+..+++++.-.|.. ...+...|..|..+|+|++|+..++++++.+|+ ++.+++-++.
T Consensus 73 dll~l~~~~G~~~~A~~~~eka~~p~n~~-----~~~llalA~ly~~~gdyd~Aiely~kaL~~dP~---n~~~l~gLa~ 144 (822)
T PRK14574 73 DWLQIAGWAGRDQEVIDVYERYQSSMNIS-----SRGLASAARAYRNEKRWDQALALWQSSLKKDPT---NPDLISGMIM 144 (822)
T ss_pred HHHHHHHHcCCcHHHHHHHHHhccCCCCC-----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC---CHHHHHHHHH
Confidence 33444556666666666666666222322 444455577899999999999999999999999 8999998889
Q ss_pred HHHHhhcHHHHHHHHHHHHHHhccCCCCchhhccCChHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 007571 473 AYDMLALAKESLLDAILFINECSQSNDPDLSLRQNKVPDYAERLVKKQMRAAWLFREAAIKHG 535 (598)
Q Consensus 473 Ay~~LGdy~EAl~d~~kALel~~k~~d~~~~~r~~Ki~~~ierlL~Kqk~a~~~f~eA~~k~~ 535 (598)
++...+++++|+..+.++++..+... .....-++.....+...+...++++...+|
T Consensus 145 ~y~~~~q~~eAl~~l~~l~~~dp~~~-------~~l~layL~~~~~~~~~AL~~~ekll~~~P 200 (822)
T PRK14574 145 TQADAGRGGVVLKQATELAERDPTVQ-------NYMTLSYLNRATDRNYDALQASSEAVRLAP 200 (822)
T ss_pred HHhhcCCHHHHHHHHHHhcccCcchH-------HHHHHHHHHHhcchHHHHHHHHHHHHHhCC
Confidence 99999999999999998888866511 111222222222444455556666666644
No 112
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=97.77 E-value=0.00021 Score=68.78 Aligned_cols=84 Identities=14% Similarity=-0.020 Sum_probs=71.6
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCcCHH
Q 007571 386 AAALVVKLEGNSLFSAGNISGAASKYSEALALCPMRSKKERVVLYSNRAQCHLLMQQPLAAISDATRALCLHNPLNRHAK 465 (598)
Q Consensus 386 ~~A~~lKeeGN~lfk~GdY~eAIe~YskALel~P~~~~~~~a~ly~NRA~cylKLgdyeeAI~D~~kALeLdP~~~~~~K 465 (598)
..+.-+...|-.+-..|+|.+||..|.+|+.++|++ +..+.|.|.||+++|+.+.|.+.++.||.+--. ++...
T Consensus 67 ~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~dd-----p~~~~~ag~c~L~lG~~~~A~~aF~~Ai~~~~~-~~~~~ 140 (157)
T PRK15363 67 WSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDA-----PQAPWAAAECYLACDNVCYAIKALKAVVRICGE-VSEHQ 140 (157)
T ss_pred ccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCC-----chHHHHHHHHHHHcCCHHHHHHHHHHHHHHhcc-ChhHH
Confidence 457789999999999999999999999999999999 999999999999999999999999999988632 11334
Q ss_pred HHHHHHHHHH
Q 007571 466 SLWRRAQAYD 475 (598)
Q Consensus 466 AyyRRAqAy~ 475 (598)
.+..+|++++
T Consensus 141 ~l~~~A~~~L 150 (157)
T PRK15363 141 ILRQRAEKML 150 (157)
T ss_pred HHHHHHHHHH
Confidence 5555666554
No 113
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.77 E-value=5.7e-05 Score=82.29 Aligned_cols=103 Identities=17% Similarity=0.100 Sum_probs=92.4
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCcCHHH
Q 007571 387 AALVVKLEGNSLFSAGNISGAASKYSEALALCPMRSKKERVVLYSNRAQCHLLMQQPLAAISDATRALCLHNPLNRHAKS 466 (598)
Q Consensus 387 ~A~~lKeeGN~lfk~GdY~eAIe~YskALel~P~~~~~~~a~ly~NRA~cylKLgdyeeAI~D~~kALeLdP~~~~~~KA 466 (598)
.+.++.++||..|..|+|++|.+.|.+||.-+... ..+++|.+..+-++|+.++|+..+-+.-.+--+ ++..
T Consensus 489 n~~a~~nkgn~~f~ngd~dka~~~ykeal~ndasc-----~ealfniglt~e~~~~ldeald~f~klh~il~n---n~ev 560 (840)
T KOG2003|consen 489 NAAALTNKGNIAFANGDLDKAAEFYKEALNNDASC-----TEALFNIGLTAEALGNLDEALDCFLKLHAILLN---NAEV 560 (840)
T ss_pred CHHHhhcCCceeeecCcHHHHHHHHHHHHcCchHH-----HHHHHHhcccHHHhcCHHHHHHHHHHHHHHHHh---hHHH
Confidence 35667889999999999999999999999988777 889999999999999999999999886555556 8899
Q ss_pred HHHHHHHHHHhhcHHHHHHHHHHHHHHhccC
Q 007571 467 LWRRAQAYDMLALAKESLLDAILFINECSQS 497 (598)
Q Consensus 467 yyRRAqAy~~LGdy~EAl~d~~kALel~~k~ 497 (598)
++..|.+|..+.+...|++.+.++..+.|++
T Consensus 561 l~qianiye~led~aqaie~~~q~~slip~d 591 (840)
T KOG2003|consen 561 LVQIANIYELLEDPAQAIELLMQANSLIPND 591 (840)
T ss_pred HHHHHHHHHHhhCHHHHHHHHHHhcccCCCC
Confidence 9999999999999999999999999888863
No 114
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=97.75 E-value=0.00043 Score=74.91 Aligned_cols=99 Identities=14% Similarity=0.019 Sum_probs=83.3
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCcCHHHHHH
Q 007571 390 VVKLEGNSLFSAGNISGAASKYSEALALCPMRSKKERVVLYSNRAQCHLLMQQPLAAISDATRALCLHNPLNRHAKSLWR 469 (598)
Q Consensus 390 ~lKeeGN~lfk~GdY~eAIe~YskALel~P~~~~~~~a~ly~NRA~cylKLgdyeeAI~D~~kALeLdP~~~~~~KAyyR 469 (598)
.+.+.+..+.|.++|..|+..-+++|.++|.+ +.+++.||.|++.+++|+.|+.|+.+|++++|. |-.+...
T Consensus 259 ~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N-----~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~---Nka~~~e 330 (397)
T KOG0543|consen 259 CHLNLAACYLKLKEYKEAIESCNKVLELDPNN-----VKALYRRGQALLALGEYDLARDDFQKALKLEPS---NKAARAE 330 (397)
T ss_pred HhhHHHHHHHhhhhHHHHHHHHHHHHhcCCCc-----hhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCC---cHHHHHH
Confidence 45567777899999999999999999999999 999999999999999999999999999999999 8767666
Q ss_pred HHHHHHHhhcHHHH-HHHHHHHHHHhcc
Q 007571 470 RAQAYDMLALAKES-LLDAILFINECSQ 496 (598)
Q Consensus 470 RAqAy~~LGdy~EA-l~d~~kALel~~k 496 (598)
+..+.....++.+. .+.|...+.....
T Consensus 331 l~~l~~k~~~~~~kekk~y~~mF~k~~~ 358 (397)
T KOG0543|consen 331 LIKLKQKIREYEEKEKKMYANMFAKLAE 358 (397)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcccc
Confidence 77776666666555 5566666666553
No 115
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=97.72 E-value=0.00028 Score=79.25 Aligned_cols=112 Identities=20% Similarity=0.022 Sum_probs=96.5
Q ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC---CchHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCC---
Q 007571 385 QAAALVVKLEGNSLFSAGNISGAASKYSEALALCPM---RSKKERVVLYSNRAQCHLLMQQPLAAISDATRALCLHN--- 458 (598)
Q Consensus 385 ~~~A~~lKeeGN~lfk~GdY~eAIe~YskALel~P~---~~~~~~a~ly~NRA~cylKLgdyeeAI~D~~kALeLdP--- 458 (598)
...+..+.+.|-.+++.|+|++|-.++.+|+++... .........++|.++.+..+++|++|+..+.+++++--
T Consensus 280 ~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~ 359 (508)
T KOG1840|consen 280 PAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAP 359 (508)
T ss_pred HHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhc
Confidence 357889999999999999999999999999988533 34567899999999999999999999999999997632
Q ss_pred C-CC-cCHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHhcc
Q 007571 459 P-LN-RHAKSLWRRAQAYDMLALAKESLLDAILFINECSQ 496 (598)
Q Consensus 459 ~-~~-~~~KAyyRRAqAy~~LGdy~EAl~d~~kALel~~k 496 (598)
. .+ --.+.+-++|..|+.+|+|++|...|++|++..-.
T Consensus 360 g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~ 399 (508)
T KOG1840|consen 360 GEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRE 399 (508)
T ss_pred cccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHh
Confidence 1 11 14688999999999999999999999999998754
No 116
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=97.69 E-value=0.00073 Score=74.52 Aligned_cols=103 Identities=15% Similarity=0.013 Sum_probs=95.2
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCcCHHH
Q 007571 387 AALVVKLEGNSLFSAGNISGAASKYSEALALCPMRSKKERVVLYSNRAQCHLLMQQPLAAISDATRALCLHNPLNRHAKS 466 (598)
Q Consensus 387 ~A~~lKeeGN~lfk~GdY~eAIe~YskALel~P~~~~~~~a~ly~NRA~cylKLgdyeeAI~D~~kALeLdP~~~~~~KA 466 (598)
.....+..+-..|..|+++.|....+..|...|++ +.+..-++..+++.++..+|++-+.+++.++|+ .+-.
T Consensus 305 ~~aa~YG~A~~~~~~~~~d~A~~~l~~L~~~~P~N-----~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~---~~~l 376 (484)
T COG4783 305 GLAAQYGRALQTYLAGQYDEALKLLQPLIAAQPDN-----PYYLELAGDILLEANKAKEAIERLKKALALDPN---SPLL 376 (484)
T ss_pred chHHHHHHHHHHHHhcccchHHHHHHHHHHhCCCC-----HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCC---ccHH
Confidence 34556778888999999999999999999999999 999999999999999999999999999999999 8888
Q ss_pred HHHHHHHHHHhhcHHHHHHHHHHHHHHhccC
Q 007571 467 LWRRAQAYDMLALAKESLLDAILFINECSQS 497 (598)
Q Consensus 467 yyRRAqAy~~LGdy~EAl~d~~kALel~~k~ 497 (598)
.+.+|++|+..|++++|+..++..+...|++
T Consensus 377 ~~~~a~all~~g~~~eai~~L~~~~~~~p~d 407 (484)
T COG4783 377 QLNLAQALLKGGKPQEAIRILNRYLFNDPED 407 (484)
T ss_pred HHHHHHHHHhcCChHHHHHHHHHHhhcCCCC
Confidence 9999999999999999999999999887763
No 117
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=97.67 E-value=0.00092 Score=61.83 Aligned_cols=110 Identities=16% Similarity=0.142 Sum_probs=86.3
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---CCC----chHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHH----
Q 007571 387 AALVVKLEGNSLFSAGNISGAASKYSEALALC---PMR----SKKERVVLYSNRAQCHLLMQQPLAAISDATRALC---- 455 (598)
Q Consensus 387 ~A~~lKeeGN~lfk~GdY~eAIe~YskALel~---P~~----~~~~~a~ly~NRA~cylKLgdyeeAI~D~~kALe---- 455 (598)
.+-....+|......|-|++|...|.+|++.. |.. ..-.-+.+|.-++.++..+|+|++++...++||.
T Consensus 8 ~aY~aLs~ae~ql~~g~~~eAa~s~r~AM~~srtiP~eEaFDh~GFDA~chA~Ls~A~~~Lgry~e~L~sA~~aL~YFNR 87 (144)
T PF12968_consen 8 MAYMALSDAERQLQDGAYEEAAASCRKAMEVSRTIPAEEAFDHDGFDAFCHAGLSGALAGLGRYDECLQSADRALRYFNR 87 (144)
T ss_dssp HHHHHHHHHHHHHHHT-HHHHHHHHHHHHHHHTTS-TTS---HHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhccCChHhhcccccHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhh
Confidence 34444567778889999999999999999874 332 1234688999999999999999999999999994
Q ss_pred ---hCCCC-CcCHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHhcc
Q 007571 456 ---LHNPL-NRHAKSLWRRAQAYDMLALAKESLLDAILFINECSQ 496 (598)
Q Consensus 456 ---LdP~~-~~~~KAyyRRAqAy~~LGdy~EAl~d~~kALel~~k 496 (598)
|+.+. ..++.+.|+||.++..+|+.++|+..|+++-+....
T Consensus 88 RGEL~qdeGklWIaaVfsra~Al~~~Gr~~eA~~~fr~agEMiaE 132 (144)
T PF12968_consen 88 RGELHQDEGKLWIAAVFSRAVALEGLGRKEEALKEFRMAGEMIAE 132 (144)
T ss_dssp H--TTSTHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHH
T ss_pred ccccccccchhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHH
Confidence 44441 336789999999999999999999999999887653
No 118
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=97.65 E-value=0.0027 Score=65.40 Aligned_cols=110 Identities=13% Similarity=0.034 Sum_probs=92.5
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCcCHHH
Q 007571 387 AALVVKLEGNSLFSAGNISGAASKYSEALALCPMRSKKERVVLYSNRAQCHLLMQQPLAAISDATRALCLHNPLNRHAKS 466 (598)
Q Consensus 387 ~A~~lKeeGN~lfk~GdY~eAIe~YskALel~P~~~~~~~a~ly~NRA~cylKLgdyeeAI~D~~kALeLdP~~~~~~KA 466 (598)
-+..+.++|....+.|+|.+|+..|.+.....|.. +....+...++.+++|-++|+.|+...++-+.+.|+..--.-+
T Consensus 33 p~~~LY~~g~~~L~~gn~~~A~~~fe~l~~~~p~s--~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~ 110 (254)
T COG4105 33 PASELYNEGLTELQKGNYEEAIKYFEALDSRHPFS--PYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYA 110 (254)
T ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC--cccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHH
Confidence 36779999999999999999999999999998875 3346777889999999999999999999999999982113467
Q ss_pred HHHHHHHHHHhh--------cHHHHHHHHHHHHHHhccCC
Q 007571 467 LWRRAQAYDMLA--------LAKESLLDAILFINECSQSN 498 (598)
Q Consensus 467 yyRRAqAy~~LG--------dy~EAl~d~~kALel~~k~~ 498 (598)
+|-+|.++...= -..+|+.+|+..++..|++.
T Consensus 111 ~YlkgLs~~~~i~~~~rDq~~~~~A~~~f~~~i~ryPnS~ 150 (254)
T COG4105 111 YYLKGLSYFFQIDDVTRDQSAARAAFAAFKELVQRYPNSR 150 (254)
T ss_pred HHHHHHHHhccCCccccCHHHHHHHHHHHHHHHHHCCCCc
Confidence 888888876542 25789999999999999754
No 119
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=97.65 E-value=0.0021 Score=59.37 Aligned_cols=107 Identities=18% Similarity=0.033 Sum_probs=85.8
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-----------------chHHHHHHHHHHHHHHHHcCChHHHHHH
Q 007571 387 AALVVKLEGNSLFSAGNISGAASKYSEALALCPMR-----------------SKKERVVLYSNRAQCHLLMQQPLAAISD 449 (598)
Q Consensus 387 ~A~~lKeeGN~lfk~GdY~eAIe~YskALel~P~~-----------------~~~~~a~ly~NRA~cylKLgdyeeAI~D 449 (598)
....+...|...-..++...++..|.+|+.+...+ .......+...++..+...|++++|+..
T Consensus 5 ~F~~~~~~a~~~~~~~~~~~~~~~~~~al~ly~G~~l~~~~~~~W~~~~r~~l~~~~~~~~~~l~~~~~~~~~~~~a~~~ 84 (146)
T PF03704_consen 5 RFEALVREARAAARAGDPEEAIELLEEALALYRGDFLPDLDDEEWVEPERERLRELYLDALERLAEALLEAGDYEEALRL 84 (146)
T ss_dssp HHHHHHHHHHHHHHTT-HHHHHHHHHHHHTT--SSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTT-HHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHH
Confidence 34556667777888899999999999999875332 1134567778888899999999999999
Q ss_pred HHHHHHhCCCCCcCHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHhcc
Q 007571 450 ATRALCLHNPLNRHAKSLWRRAQAYDMLALAKESLLDAILFINECSQ 496 (598)
Q Consensus 450 ~~kALeLdP~~~~~~KAyyRRAqAy~~LGdy~EAl~d~~kALel~~k 496 (598)
+.+++.++|- +-.+|..+-.+|...|+..+|+..|.++.+.+.+
T Consensus 85 ~~~~l~~dP~---~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~ 128 (146)
T PF03704_consen 85 LQRALALDPY---DEEAYRLLMRALAAQGRRAEALRVYERYRRRLRE 128 (146)
T ss_dssp HHHHHHHSTT----HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHH
T ss_pred HHHHHhcCCC---CHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHH
Confidence 9999999999 9999999999999999999999999998777653
No 120
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=97.61 E-value=0.00059 Score=77.02 Aligned_cols=107 Identities=16% Similarity=0.087 Sum_probs=89.2
Q ss_pred HHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHhCCCCch--------------------HH------------------
Q 007571 387 AALVVKLEGNSLFSAGN---ISGAASKYSEALALCPMRSK--------------------KE------------------ 425 (598)
Q Consensus 387 ~A~~lKeeGN~lfk~Gd---Y~eAIe~YskALel~P~~~~--------------------~~------------------ 425 (598)
.|-.+.-+|..++..++ +..|+.+|++|++++|++.. ..
T Consensus 338 ~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ldP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~al~~~~ 417 (517)
T PRK10153 338 AALTLFYQAHHYLNSGDAKSLNKASDLLEEILKSEPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIVALPELN 417 (517)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhhhcccCc
Confidence 57788889998887665 88999999999999999611 00
Q ss_pred -HHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCcCHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHhccC
Q 007571 426 -RVVLYSNRAQCHLLMQQPLAAISDATRALCLHNPLNRHAKSLWRRAQAYDMLALAKESLLDAILFINECSQS 497 (598)
Q Consensus 426 -~a~ly~NRA~cylKLgdyeeAI~D~~kALeLdP~~~~~~KAyyRRAqAy~~LGdy~EAl~d~~kALel~~k~ 497 (598)
.+.+|.-+|..++..|++++|...+++|+.++|+ ..+|..+|+++...|++++|+..|.+|+.+.|..
T Consensus 418 ~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~ps----~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P~~ 486 (517)
T PRK10153 418 VLPRIYEILAVQALVKGKTDEAYQAINKAIDLEMS----WLNYVLLGKVYELKGDNRLAADAYSTAFNLRPGE 486 (517)
T ss_pred CChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC
Confidence 1244556677777889999999999999999986 4699999999999999999999999999998863
No 121
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=97.60 E-value=0.0025 Score=74.52 Aligned_cols=101 Identities=18% Similarity=0.072 Sum_probs=84.8
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC--CcCHHHH
Q 007571 390 VVKLEGNSLFSAGNISGAASKYSEALALCPMRSKKERVVLYSNRAQCHLLMQQPLAAISDATRALCLHNPL--NRHAKSL 467 (598)
Q Consensus 390 ~lKeeGN~lfk~GdY~eAIe~YskALel~P~~~~~~~a~ly~NRA~cylKLgdyeeAI~D~~kALeLdP~~--~~~~KAy 467 (598)
-++.-+...-+.|++.+|+-+|++||+..|.+ ..++.+|+..|.++|++..|..-+.++++++|+. ...-..-
T Consensus 209 ~W~~ladls~~~~~i~qA~~cy~rAI~~~p~n-----~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i 283 (895)
T KOG2076|consen 209 LWKRLADLSEQLGNINQARYCYSRAIQANPSN-----WELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLI 283 (895)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHhcCCcc-----hHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHH
Confidence 34555556668899999999999999999998 9999999999999999999999999999999942 1123445
Q ss_pred HHHHHHHHHhhcHHHHHHHHHHHHHHhc
Q 007571 468 WRRAQAYDMLALAKESLLDAILFINECS 495 (598)
Q Consensus 468 yRRAqAy~~LGdy~EAl~d~~kALel~~ 495 (598)
++.++.+...++-+.|++.+..++....
T Consensus 284 ~~~~~~~~~~~~~e~a~~~le~~~s~~~ 311 (895)
T KOG2076|consen 284 RRVAHYFITHNERERAAKALEGALSKEK 311 (895)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHhhcc
Confidence 5559999999999999999999998543
No 122
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=97.60 E-value=0.00052 Score=75.04 Aligned_cols=92 Identities=22% Similarity=0.197 Sum_probs=83.5
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCcCHHHHHHHHH
Q 007571 393 LEGNSLFSAGNISGAASKYSEALALCPMRSKKERVVLYSNRAQCHLLMQQPLAAISDATRALCLHNPLNRHAKSLWRRAQ 472 (598)
Q Consensus 393 eeGN~lfk~GdY~eAIe~YskALel~P~~~~~~~a~ly~NRA~cylKLgdyeeAI~D~~kALeLdP~~~~~~KAyyRRAq 472 (598)
-.+..++..++-.+|+....++|...|.+ +.++.--|..+++.++|+.|+..+.+|+++.|. ..++|+.+|+
T Consensus 205 ~LA~v~l~~~~E~~AI~ll~~aL~~~p~d-----~~LL~~Qa~fLl~k~~~~lAL~iAk~av~lsP~---~f~~W~~La~ 276 (395)
T PF09295_consen 205 LLARVYLLMNEEVEAIRLLNEALKENPQD-----SELLNLQAEFLLSKKKYELALEIAKKAVELSPS---EFETWYQLAE 276 (395)
T ss_pred HHHHHHHhcCcHHHHHHHHHHHHHhCCCC-----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCch---hHHHHHHHHH
Confidence 35666777888999999999999999998 999999999999999999999999999999999 9999999999
Q ss_pred HHHHhhcHHHHHHHHHHHHHHhcc
Q 007571 473 AYDMLALAKESLLDAILFINECSQ 496 (598)
Q Consensus 473 Ay~~LGdy~EAl~d~~kALel~~k 496 (598)
+|..+|+|++|+. +|+.+|-
T Consensus 277 ~Yi~~~d~e~ALl----aLNs~Pm 296 (395)
T PF09295_consen 277 CYIQLGDFENALL----ALNSCPM 296 (395)
T ss_pred HHHhcCCHHHHHH----HHhcCcC
Confidence 9999999999974 4666664
No 123
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=97.60 E-value=0.0031 Score=68.59 Aligned_cols=104 Identities=10% Similarity=-0.054 Sum_probs=68.7
Q ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCcCH
Q 007571 385 QAAALVVKLEGNSLFSAGNISGAASKYSEALALCPMRSKKERVVLYSNRAQCHLLMQQPLAAISDATRALCLHNPLNRHA 464 (598)
Q Consensus 385 ~~~A~~lKeeGN~lfk~GdY~eAIe~YskALel~P~~~~~~~a~ly~NRA~cylKLgdyeeAI~D~~kALeLdP~~~~~~ 464 (598)
.+++.....+|-..+..|+|+.|.+...++.+..|.. ...+.-.|.++..+|+++.|...+.++.+..|+ +.
T Consensus 81 ~~k~~~~~~~glla~~~g~~~~A~~~l~~~~~~~~~~-----~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~---~~ 152 (409)
T TIGR00540 81 RRKAQKQTEEALLKLAEGDYAKAEKLIAKNADHAAEP-----VLNLIKAAEAAQQRGDEARANQHLEEAAELAGN---DN 152 (409)
T ss_pred HHHHHHHHHHHHHHHhCCCHHHHHHHHHHHhhcCCCC-----HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCc---Cc
Confidence 4456666777777777777777777777777777765 555555666666667777777777666666665 32
Q ss_pred -HHHHHHHHHHHHhhcHHHHHHHHHHHHHHhcc
Q 007571 465 -KSLWRRAQAYDMLALAKESLLDAILFINECSQ 496 (598)
Q Consensus 465 -KAyyRRAqAy~~LGdy~EAl~d~~kALel~~k 496 (598)
.+...+++.++..|+++.|+..++..++..|+
T Consensus 153 l~~~~~~a~l~l~~~~~~~Al~~l~~l~~~~P~ 185 (409)
T TIGR00540 153 ILVEIARTRILLAQNELHAARHGVDKLLEMAPR 185 (409)
T ss_pred hHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC
Confidence 23333466666666677776666666666654
No 124
>PRK14574 hmsH outer membrane protein; Provisional
Probab=97.57 E-value=0.0012 Score=78.36 Aligned_cols=100 Identities=8% Similarity=-0.079 Sum_probs=84.2
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCcCHHHH
Q 007571 388 ALVVKLEGNSLFSAGNISGAASKYSEALALCPMRSKKERVVLYSNRAQCHLLMQQPLAAISDATRALCLHNPLNRHAKSL 467 (598)
Q Consensus 388 A~~lKeeGN~lfk~GdY~eAIe~YskALel~P~~~~~~~a~ly~NRA~cylKLgdyeeAI~D~~kALeLdP~~~~~~KAy 467 (598)
...+...|..+...|+|++|++.|+++++.+|.+ +.++.-++..|..++++++|+..+.+++..+|. +...
T Consensus 102 ~~~llalA~ly~~~gdyd~Aiely~kaL~~dP~n-----~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~dp~---~~~~- 172 (822)
T PRK14574 102 SRGLASAARAYRNEKRWDQALALWQSSLKKDPTN-----PDLISGMIMTQADAGRGGVVLKQATELAERDPT---VQNY- 172 (822)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC-----HHHHHHHHHHHhhcCCHHHHHHHHHHhcccCcc---hHHH-
Confidence 4455556788889999999999999999999998 777788899999999999999999999999998 4433
Q ss_pred HHHHHHHHHhhcHHHHHHHHHHHHHHhcc
Q 007571 468 WRRAQAYDMLALAKESLLDAILFINECSQ 496 (598)
Q Consensus 468 yRRAqAy~~LGdy~EAl~d~~kALel~~k 496 (598)
.-++..+..++++.+|+..|+++++..|.
T Consensus 173 l~layL~~~~~~~~~AL~~~ekll~~~P~ 201 (822)
T PRK14574 173 MTLSYLNRATDRNYDALQASSEAVRLAPT 201 (822)
T ss_pred HHHHHHHHhcchHHHHHHHHHHHHHhCCC
Confidence 33455555577777799999999999886
No 125
>KOG4151 consensus Myosin assembly protein/sexual cycle protein and related proteins [Posttranslational modification, protein turnover, chaperones; Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=97.56 E-value=0.00017 Score=83.09 Aligned_cols=114 Identities=28% Similarity=0.349 Sum_probs=101.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHHHc--CChHHHHHHHHHHHHh
Q 007571 379 EDLHIKQAAALVVKLEGNSLFSAGNISGAASKYSEALALCPMRSKKERVVLYSNRAQCHLLM--QQPLAAISDATRALCL 456 (598)
Q Consensus 379 eElee~~~~A~~lKeeGN~lfk~GdY~eAIe~YskALel~P~~~~~~~a~ly~NRA~cylKL--gdyeeAI~D~~kALeL 456 (598)
+++...+..+..++.+||.+|.+++|..|.-.|..++.+.|.+ ....+.+++|.+.||+.+ ++|..++.+|+-|+..
T Consensus 44 ~di~v~l~ra~~~~~E~n~~~~K~d~~~~~~~~~~~~~llp~~-~~~~a~~~~~~~s~~m~~~l~~~~~~~~E~~la~~~ 122 (748)
T KOG4151|consen 44 EDIEVFLSRALELKEEGNKLFQKRDYEGAMFRYDCAIKLLPKD-HHVVATLRSNQASCYMQLGLGEYPKAIPECELALES 122 (748)
T ss_pred cchHHHHHHHHHHHhhhhHHhhhhhhhccchhhhhhheecccc-chhhhhHHHHHHHHHhhcCccchhhhcCchhhhhhc
Confidence 4455667889999999999999999999999999999999953 556799999999999865 5999999999999999
Q ss_pred CCCCCcCHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHhcc
Q 007571 457 HNPLNRHAKSLWRRAQAYDMLALAKESLLDAILFINECSQ 496 (598)
Q Consensus 457 dP~~~~~~KAyyRRAqAy~~LGdy~EAl~d~~kALel~~k 496 (598)
.|. ..+++++|+.+|..+++++-|++|..-..+..|+
T Consensus 123 ~p~---i~~~Ll~r~~~y~al~k~d~a~rdl~i~~~~~p~ 159 (748)
T KOG4151|consen 123 QPR---ISKALLKRARKYEALNKLDLAVRDLRIVEKMDPS 159 (748)
T ss_pred cch---HHHHHhhhhhHHHHHHHHHHHHHHHHHHhcCCCC
Confidence 999 9999999999999999999999996666666554
No 126
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=97.56 E-value=0.00013 Score=51.16 Aligned_cols=33 Identities=21% Similarity=0.128 Sum_probs=27.8
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC
Q 007571 427 VVLYSNRAQCHLLMQQPLAAISDATRALCLHNP 459 (598)
Q Consensus 427 a~ly~NRA~cylKLgdyeeAI~D~~kALeLdP~ 459 (598)
+.+|+|+|.+|+.+|+|++|+.+|++||+++|+
T Consensus 1 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~ 33 (34)
T PF00515_consen 1 AEAYYNLGNAYFQLGDYEEALEYYQRALELDPD 33 (34)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred CHHHHHHHHHHHHhCCchHHHHHHHHHHHHCcC
Confidence 357888999999999999999999999999886
No 127
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.55 E-value=0.00016 Score=78.95 Aligned_cols=100 Identities=17% Similarity=0.022 Sum_probs=92.5
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCcCHHHHHHHH
Q 007571 392 KLEGNSLFSAGNISGAASKYSEALALCPMRSKKERVVLYSNRAQCHLLMQQPLAAISDATRALCLHNPLNRHAKSLWRRA 471 (598)
Q Consensus 392 KeeGN~lfk~GdY~eAIe~YskALel~P~~~~~~~a~ly~NRA~cylKLgdyeeAI~D~~kALeLdP~~~~~~KAyyRRA 471 (598)
.+.||.+|++.+|.+||+.|.-||...|.-.++.+..++.|.+..+..+|+|+.||..++..++..|+ .++-+++-
T Consensus 241 mnigni~~kkr~fskaikfyrmaldqvpsink~~rikil~nigvtfiq~gqy~dainsfdh~m~~~pn----~~a~~nl~ 316 (840)
T KOG2003|consen 241 MNIGNIHFKKREFSKAIKFYRMALDQVPSINKDMRIKILNNIGVTFIQAGQYDDAINSFDHCMEEAPN----FIAALNLI 316 (840)
T ss_pred eeecceeeehhhHHHHHHHHHHHHhhccccchhhHHHHHhhcCeeEEecccchhhHhhHHHHHHhCcc----HHhhhhhh
Confidence 46899999999999999999999999999878899999999999999999999999999999999996 57778899
Q ss_pred HHHHHhhcHHHHHHHHHHHHHHhc
Q 007571 472 QAYDMLALAKESLLDAILFINECS 495 (598)
Q Consensus 472 qAy~~LGdy~EAl~d~~kALel~~ 495 (598)
.++...|+-+.-.+.|.+.+..-.
T Consensus 317 i~~f~i~d~ekmkeaf~kli~ip~ 340 (840)
T KOG2003|consen 317 ICAFAIGDAEKMKEAFQKLIDIPG 340 (840)
T ss_pred hhheecCcHHHHHHHHHHHhcCCC
Confidence 999999999999999999987643
No 128
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=97.54 E-value=0.00044 Score=81.04 Aligned_cols=51 Identities=20% Similarity=0.160 Sum_probs=33.4
Q ss_pred hhHHHhhhhccccCCccccccc--hHHhhhccccccccCCCCCccchhHHHHHhhccCCCCc
Q 007571 206 CWSLQLINCFAFKPEFLPAICK--PEFLAKLPGMWGGLVNENSPAGIGLLRTICHHKLGRGP 265 (598)
Q Consensus 206 c~s~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~gr~~ 265 (598)
|=.|..=-|++|--.=-..+|+ +.+| ..|+.+|+++++.+-+|--++|+.-
T Consensus 164 il~LlGkA~i~ynkkdY~~al~yyk~al---------~inp~~~aD~rIgig~Cf~kl~~~~ 216 (1018)
T KOG2002|consen 164 ILALLGKARIAYNKKDYRGALKYYKKAL---------RINPACKADVRIGIGHCFWKLGMSE 216 (1018)
T ss_pred hHHHHHHHHHHhccccHHHHHHHHHHHH---------hcCcccCCCccchhhhHHHhccchh
Confidence 3344445677776433334443 4444 3688999999999999987777753
No 129
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=97.53 E-value=0.0024 Score=72.16 Aligned_cols=97 Identities=13% Similarity=-0.082 Sum_probs=77.5
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCcCHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHhccCCCCchhhccCC
Q 007571 429 LYSNRAQCHLLMQQPLAAISDATRALCLHNPLNRHAKSLWRRAQAYDMLALAKESLLDAILFINECSQSNDPDLSLRQNK 508 (598)
Q Consensus 429 ly~NRA~cylKLgdyeeAI~D~~kALeLdP~~~~~~KAyyRRAqAy~~LGdy~EAl~d~~kALel~~k~~d~~~~~r~~K 508 (598)
+++-+|++|-.+|++++|+...++||++.|. .+..|+.+|.+|.+.|++.+|...+..|-++...+.
T Consensus 196 ~~~~lAqhyd~~g~~~~Al~~Id~aI~htPt---~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~~DR---------- 262 (517)
T PF12569_consen 196 TLYFLAQHYDYLGDYEKALEYIDKAIEHTPT---LVELYMTKARILKHAGDLKEAAEAMDEARELDLADR---------- 262 (517)
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHhcCCC---cHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCChhhH----------
Confidence 5577899999999999999999999999999 999999999999999999999999999998866522
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCCC
Q 007571 509 VPDYAERLVKKQMRAAWLFREAAIKHGGVHGEG 541 (598)
Q Consensus 509 i~~~ierlL~Kqk~a~~~f~eA~~k~~~i~~d~ 541 (598)
++..-..|.+.+-...++|....+..|-++
T Consensus 263 ---yiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~ 292 (517)
T PF12569_consen 263 ---YINSKCAKYLLRAGRIEEAEKTASLFTRED 292 (517)
T ss_pred ---HHHHHHHHHHHHCCCHHHHHHHHHhhcCCC
Confidence 333344444555555666766655554444
No 130
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=97.41 E-value=0.003 Score=67.09 Aligned_cols=103 Identities=11% Similarity=-0.064 Sum_probs=74.8
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCcCHHHHHH
Q 007571 390 VVKLEGNSLFSAGNISGAASKYSEALALCPMRSKKERVVLYSNRAQCHLLMQQPLAAISDATRALCLHNPLNRHAKSLWR 469 (598)
Q Consensus 390 ~lKeeGN~lfk~GdY~eAIe~YskALel~P~~~~~~~a~ly~NRA~cylKLgdyeeAI~D~~kALeLdP~~~~~~KAyyR 469 (598)
++...-+.|-+..+|++||+.-.+..++.|.....+.+..|+.+|+.++.-.+.+.|+....+|++-||+ ++.|-.-
T Consensus 143 AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~kAlqa~~~---cvRAsi~ 219 (389)
T COG2956 143 ALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELLKKALQADKK---CVRASII 219 (389)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhCcc---ceehhhh
Confidence 4444555566667777777777777777776666667777777777777777777777777777777777 7777777
Q ss_pred HHHHHHHhhcHHHHHHHHHHHHHHhc
Q 007571 470 RAQAYDMLALAKESLLDAILFINECS 495 (598)
Q Consensus 470 RAqAy~~LGdy~EAl~d~~kALel~~ 495 (598)
+|.+++..|+|..|++.++.+++..+
T Consensus 220 lG~v~~~~g~y~~AV~~~e~v~eQn~ 245 (389)
T COG2956 220 LGRVELAKGDYQKAVEALERVLEQNP 245 (389)
T ss_pred hhHHHHhccchHHHHHHHHHHHHhCh
Confidence 77777777777777777777776633
No 131
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=97.38 E-value=0.0082 Score=65.22 Aligned_cols=88 Identities=17% Similarity=0.069 Sum_probs=44.5
Q ss_pred HHcCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCcCHHHHHHHHHHHHHhh
Q 007571 399 FSAGNISGAASKYSEALALCPMRSKKERVVLYSNRAQCHLLMQQPLAAISDATRALCLHNPLNRHAKSLWRRAQAYDMLA 478 (598)
Q Consensus 399 fk~GdY~eAIe~YskALel~P~~~~~~~a~ly~NRA~cylKLgdyeeAI~D~~kALeLdP~~~~~~KAyyRRAqAy~~LG 478 (598)
.+.|+++.|...|.+|.+..|+. ......-.+..++..|+++.|+..++++++.+|+ ++.++.-.+.+|...|
T Consensus 129 ~~~g~~~~A~~~l~~A~~~~~~~----~~~~~l~~a~l~l~~g~~~~Al~~l~~~~~~~P~---~~~al~ll~~~~~~~g 201 (398)
T PRK10747 129 QQRGDEARANQHLERAAELADND----QLPVEITRVRIQLARNENHAARHGVDKLLEVAPR---HPEVLRLAEQAYIRTG 201 (398)
T ss_pred HHCCCHHHHHHHHHHHHhcCCcc----hHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC---CHHHHHHHHHHHHHHH
Confidence 45555555555555555555443 0111112345555555555555555555555555 5555555555555555
Q ss_pred cHHHHHHHHHHHHHH
Q 007571 479 LAKESLLDAILFINE 493 (598)
Q Consensus 479 dy~EAl~d~~kALel 493 (598)
++++|+..+.+..+.
T Consensus 202 dw~~a~~~l~~l~k~ 216 (398)
T PRK10747 202 AWSSLLDILPSMAKA 216 (398)
T ss_pred hHHHHHHHHHHHHHc
Confidence 555555444444443
No 132
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.38 E-value=0.0011 Score=66.45 Aligned_cols=69 Identities=17% Similarity=0.153 Sum_probs=64.2
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC
Q 007571 386 AAALVVKLEGNSLFSAGNISGAASKYSEALALCPMRSKKERVVLYSNRAQCHLLMQQPLAAISDATRALCLHNP 459 (598)
Q Consensus 386 ~~A~~lKeeGN~lfk~GdY~eAIe~YskALel~P~~~~~~~a~ly~NRA~cylKLgdyeeAI~D~~kALeLdP~ 459 (598)
..+.-+-++|-.+.+.++++.||...++||++.|++ ..++..||.+|-++..|++|+.||.+.++++|.
T Consensus 132 ~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty-----~kAl~RRAeayek~ek~eealeDyKki~E~dPs 200 (271)
T KOG4234|consen 132 ERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTY-----EKALERRAEAYEKMEKYEEALEDYKKILESDPS 200 (271)
T ss_pred HHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchh-----HHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCcc
Confidence 345667789999999999999999999999999998 788889999999999999999999999999998
No 133
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=97.35 E-value=0.0013 Score=67.55 Aligned_cols=99 Identities=12% Similarity=0.029 Sum_probs=87.0
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCcCHHHHHHHH
Q 007571 392 KLEGNSLFSAGNISGAASKYSEALALCPMRSKKERVVLYSNRAQCHLLMQQPLAAISDATRALCLHNPLNRHAKSLWRRA 471 (598)
Q Consensus 392 KeeGN~lfk~GdY~eAIe~YskALel~P~~~~~~~a~ly~NRA~cylKLgdyeeAI~D~~kALeLdP~~~~~~KAyyRRA 471 (598)
....+.++-.|+-+.+...-+++....|.+ ..++.-.+...+..|+|..|+..+.+|..++|+ +.++|.-+|
T Consensus 70 ~~~a~a~~~~G~a~~~l~~~~~~~~~~~~d-----~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~p~---d~~~~~~lg 141 (257)
T COG5010 70 AKLATALYLRGDADSSLAVLQKSAIAYPKD-----RELLAAQGKNQIRNGNFGEAVSVLRKAARLAPT---DWEAWNLLG 141 (257)
T ss_pred HHHHHHHHhcccccchHHHHhhhhccCccc-----HHHHHHHHHHHHHhcchHHHHHHHHHHhccCCC---ChhhhhHHH
Confidence 556677777888777777778877777877 556655889999999999999999999999999 999999999
Q ss_pred HHHHHhhcHHHHHHHHHHHHHHhccCC
Q 007571 472 QAYDMLALAKESLLDAILFINECSQSN 498 (598)
Q Consensus 472 qAy~~LGdy~EAl~d~~kALel~~k~~ 498 (598)
-+|.++|++++|...|.+++++.+++.
T Consensus 142 aaldq~Gr~~~Ar~ay~qAl~L~~~~p 168 (257)
T COG5010 142 AALDQLGRFDEARRAYRQALELAPNEP 168 (257)
T ss_pred HHHHHccChhHHHHHHHHHHHhccCCc
Confidence 999999999999999999999999744
No 134
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=97.35 E-value=0.00041 Score=58.47 Aligned_cols=60 Identities=20% Similarity=0.172 Sum_probs=51.3
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 007571 388 ALVVKLEGNSLFSAGNISGAASKYSEALALCPMRSKKERVVLYSNRAQCHLLMQQPLAAISDATRA 453 (598)
Q Consensus 388 A~~lKeeGN~lfk~GdY~eAIe~YskALel~P~~~~~~~a~ly~NRA~cylKLgdyeeAI~D~~kA 453 (598)
...+...|..+|+.|+|.+|+..+++ ++..|.+ ..++.-.|.|++++|+|++|+..+.+|
T Consensus 25 ~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~-----~~~~~l~a~~~~~l~~y~eAi~~l~~~ 84 (84)
T PF12895_consen 25 SAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSN-----PDIHYLLARCLLKLGKYEEAIKALEKA 84 (84)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCH-----HHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCC-----HHHHHHHHHHHHHhCCHHHHHHHHhcC
Confidence 44566699999999999999999999 7777765 677777899999999999999998875
No 135
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=97.30 E-value=0.0014 Score=73.30 Aligned_cols=103 Identities=15% Similarity=0.099 Sum_probs=89.1
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC----CcCHHHHH
Q 007571 393 LEGNSLFSAGNISGAASKYSEALALCPMRSKKERVVLYSNRAQCHLLMQQPLAAISDATRALCLHNPL----NRHAKSLW 468 (598)
Q Consensus 393 eeGN~lfk~GdY~eAIe~YskALel~P~~~~~~~a~ly~NRA~cylKLgdyeeAI~D~~kALeLdP~~----~~~~KAyy 468 (598)
=.|.++...+++..|-+.|.+|+.++|.+ +..+.-.|.+.++.+.|.+|+..+..++..-+.. ..+...+.
T Consensus 385 Ylgmey~~t~n~kLAe~Ff~~A~ai~P~D-----plv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~ 459 (611)
T KOG1173|consen 385 YLGMEYMRTNNLKLAEKFFKQALAIAPSD-----PLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLN 459 (611)
T ss_pred HHHHHHHHhccHHHHHHHHHHHHhcCCCc-----chhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHH
Confidence 36788889999999999999999999999 8899999999999999999999999999443321 11445688
Q ss_pred HHHHHHHHhhcHHHHHHHHHHHHHHhccCCCC
Q 007571 469 RRAQAYDMLALAKESLLDAILFINECSQSNDP 500 (598)
Q Consensus 469 RRAqAy~~LGdy~EAl~d~~kALel~~k~~d~ 500 (598)
++|.++..+++|++|+..|+++|.+.|++.+.
T Consensus 460 NLGH~~Rkl~~~~eAI~~~q~aL~l~~k~~~~ 491 (611)
T KOG1173|consen 460 NLGHAYRKLNKYEEAIDYYQKALLLSPKDAST 491 (611)
T ss_pred hHHHHHHHHhhHHHHHHHHHHHHHcCCCchhH
Confidence 99999999999999999999999999986543
No 136
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=97.29 E-value=0.0042 Score=64.41 Aligned_cols=71 Identities=8% Similarity=-0.135 Sum_probs=62.2
Q ss_pred HHHHHHHHHHH-HHcCChHHHHHHHHHHHHhCCCCCcCHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHhccC
Q 007571 427 VVLYSNRAQCH-LLMQQPLAAISDATRALCLHNPLNRHAKSLWRRAQAYDMLALAKESLLDAILFINECSQS 497 (598)
Q Consensus 427 a~ly~NRA~cy-lKLgdyeeAI~D~~kALeLdP~~~~~~KAyyRRAqAy~~LGdy~EAl~d~~kALel~~k~ 497 (598)
....++.|..+ ++.|+|++|+..+.+.+...|+....+.++|.+|.+|+..|++++|+..|.++++..|++
T Consensus 142 e~~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s 213 (263)
T PRK10803 142 ANTDYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKS 213 (263)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCC
Confidence 35667788886 678999999999999999999932236899999999999999999999999999999873
No 137
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=97.28 E-value=0.0019 Score=66.92 Aligned_cols=113 Identities=20% Similarity=0.125 Sum_probs=88.3
Q ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CchHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHhC--CC-C
Q 007571 385 QAAALVVKLEGNSLFSAGNISGAASKYSEALALCPM-RSKKERVVLYSNRAQCHLLMQQPLAAISDATRALCLH--NP-L 460 (598)
Q Consensus 385 ~~~A~~lKeeGN~lfk~GdY~eAIe~YskALel~P~-~~~~~~a~ly~NRA~cylKLgdyeeAI~D~~kALeLd--P~-~ 460 (598)
...+..+...||.+-..|+|.+|.+.|.+|.++.-. .....-+..|.+-+.||.+. ++++|+..+++|+++- .+ +
T Consensus 32 e~Aa~~y~~Aa~~fk~~~~~~~A~~ay~kAa~~~~~~~~~~~Aa~~~~~Aa~~~k~~-~~~~Ai~~~~~A~~~y~~~G~~ 110 (282)
T PF14938_consen 32 EEAADLYEKAANCFKLAKDWEKAAEAYEKAADCYEKLGDKFEAAKAYEEAANCYKKG-DPDEAIECYEKAIEIYREAGRF 110 (282)
T ss_dssp HHHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHT-THHHHHHHHHHHHHHHHHCT-H
T ss_pred HHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhh-CHHHHHHHHHHHHHHHHhcCcH
Confidence 356778888888888999999999999999876432 22345678888888888777 9999999999999872 22 1
Q ss_pred CcCHHHHHHHHHHHHHh-hcHHHHHHHHHHHHHHhccCC
Q 007571 461 NRHAKSLWRRAQAYDML-ALAKESLLDAILFINECSQSN 498 (598)
Q Consensus 461 ~~~~KAyyRRAqAy~~L-Gdy~EAl~d~~kALel~~k~~ 498 (598)
..-.+.+.+.|.+|... |++++|+..|++|++......
T Consensus 111 ~~aA~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~ 149 (282)
T PF14938_consen 111 SQAAKCLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEG 149 (282)
T ss_dssp HHHHHHHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCC
Confidence 11468899999999998 999999999999999987643
No 138
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=97.28 E-value=0.0092 Score=70.45 Aligned_cols=103 Identities=13% Similarity=-0.051 Sum_probs=67.0
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCcCHHH
Q 007571 387 AALVVKLEGNSLFSAGNISGAASKYSEALALCPMRSKKERVVLYSNRAQCHLLMQQPLAAISDATRALCLHNPLNRHAKS 466 (598)
Q Consensus 387 ~A~~lKeeGN~lfk~GdY~eAIe~YskALel~P~~~~~~~a~ly~NRA~cylKLgdyeeAI~D~~kALeLdP~~~~~~KA 466 (598)
.+..+...|..+..+|+|++|-.+|.++++.+|++ ..-.+.-+|+.|++.|+++.|+..+.++++..|+ +.+.
T Consensus 306 ~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~----~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~p~---~~et 378 (1018)
T KOG2002|consen 306 KAESFYQLGRSYHAQGDFEKAFKYYMESLKADNDN----FVLPLVGLGQMYIKRGDLEESKFCFEKVLKQLPN---NYET 378 (1018)
T ss_pred HHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCC----ccccccchhHHHHHhchHHHHHHHHHHHHHhCcc---hHHH
Confidence 45666777777777777777777777777766654 2444556677777777777777777777777777 6666
Q ss_pred HHHHHHHHHHhh----cHHHHHHHHHHHHHHhcc
Q 007571 467 LWRRAQAYDMLA----LAKESLLDAILFINECSQ 496 (598)
Q Consensus 467 yyRRAqAy~~LG----dy~EAl~d~~kALel~~k 496 (598)
..-+|..|...+ .-+.|.....++++..|.
T Consensus 379 m~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~~~ 412 (1018)
T KOG2002|consen 379 MKILGCLYAHSAKKQEKRDKASNVLGKVLEQTPV 412 (1018)
T ss_pred HHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcccc
Confidence 666666666664 445555555555555543
No 139
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=97.25 E-value=0.0013 Score=68.09 Aligned_cols=111 Identities=13% Similarity=-0.053 Sum_probs=86.1
Q ss_pred HHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHhCCCC-chHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC---
Q 007571 386 AAALVVKLEGNSLFSA-GNISGAASKYSEALALCPMR-SKKERVVLYSNRAQCHLLMQQPLAAISDATRALCLHNPL--- 460 (598)
Q Consensus 386 ~~A~~lKeeGN~lfk~-GdY~eAIe~YskALel~P~~-~~~~~a~ly~NRA~cylKLgdyeeAI~D~~kALeLdP~~--- 460 (598)
..+..+.+.|..+.+. |++++|++.|.+|+++.... .......++.+.|.++.++++|++|+..++++....-+.
T Consensus 112 ~aA~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~ 191 (282)
T PF14938_consen 112 QAAKCLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLL 191 (282)
T ss_dssp HHHHHHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTT
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhccccc
Confidence 4678888889888888 99999999999999985432 345568899999999999999999999999998753221
Q ss_pred CcCHH-HHHHHHHHHHHhhcHHHHHHHHHHHHHHhcc
Q 007571 461 NRHAK-SLWRRAQAYDMLALAKESLLDAILFINECSQ 496 (598)
Q Consensus 461 ~~~~K-AyyRRAqAy~~LGdy~EAl~d~~kALel~~k 496 (598)
..+++ .+++.+.+++..||+..|...+.+.....|.
T Consensus 192 ~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~ 228 (282)
T PF14938_consen 192 KYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPS 228 (282)
T ss_dssp GHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTT
T ss_pred chhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 11344 4567888999999999999999998888764
No 140
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=97.19 E-value=0.0036 Score=68.02 Aligned_cols=88 Identities=15% Similarity=-0.076 Sum_probs=78.1
Q ss_pred HcCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCcCHHHHHHHHHHHHHhhc
Q 007571 400 SAGNISGAASKYSEALALCPMRSKKERVVLYSNRAQCHLLMQQPLAAISDATRALCLHNPLNRHAKSLWRRAQAYDMLAL 479 (598)
Q Consensus 400 k~GdY~eAIe~YskALel~P~~~~~~~a~ly~NRA~cylKLgdyeeAI~D~~kALeLdP~~~~~~KAyyRRAqAy~~LGd 479 (598)
..+++.+|+....+.++..|++ +.++.-.|..++..++|++|...++++++++|+ + ..+..++.++..+|+
T Consensus 306 ~~~~~~~al~~~e~~lk~~P~~-----~~l~l~lgrl~~~~~~~~~A~~~le~al~~~P~---~-~~~~~La~~~~~~g~ 376 (398)
T PRK10747 306 KTNNPEQLEKVLRQQIKQHGDT-----PLLWSTLGQLLMKHGEWQEASLAFRAALKQRPD---A-YDYAWLADALDRLHK 376 (398)
T ss_pred cCCChHHHHHHHHHHHhhCCCC-----HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC---H-HHHHHHHHHHHHcCC
Confidence 4588999999999999999998 888999999999999999999999999999987 3 556789999999999
Q ss_pred HHHHHHHHHHHHHHhcc
Q 007571 480 AKESLLDAILFINECSQ 496 (598)
Q Consensus 480 y~EAl~d~~kALel~~k 496 (598)
.++|...|++++.+..+
T Consensus 377 ~~~A~~~~~~~l~~~~~ 393 (398)
T PRK10747 377 PEEAAAMRRDGLMLTLQ 393 (398)
T ss_pred HHHHHHHHHHHHhhhcc
Confidence 99999999999987654
No 141
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=97.18 E-value=0.0056 Score=66.62 Aligned_cols=97 Identities=14% Similarity=0.018 Sum_probs=86.4
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCcCHHHHHHH
Q 007571 391 VKLEGNSLFSAGNISGAASKYSEALALCPMRSKKERVVLYSNRAQCHLLMQQPLAAISDATRALCLHNPLNRHAKSLWRR 470 (598)
Q Consensus 391 lKeeGN~lfk~GdY~eAIe~YskALel~P~~~~~~~a~ly~NRA~cylKLgdyeeAI~D~~kALeLdP~~~~~~KAyyRR 470 (598)
+.-.|..+...|+++.|...|.++.+..|.. ...+...++..++..|+++.|+..++++++..|+ ++.++.-.
T Consensus 121 ~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~----~l~~~~~~a~l~l~~~~~~~Al~~l~~l~~~~P~---~~~~l~ll 193 (409)
T TIGR00540 121 LIKAAEAAQQRGDEARANQHLEEAAELAGND----NILVEIARTRILLAQNELHAARHGVDKLLEMAPR---HKEVLKLA 193 (409)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCCcC----chHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC---CHHHHHHH
Confidence 4567788889999999999999999998886 1234555699999999999999999999999999 99999999
Q ss_pred HHHHHHhhcHHHHHHHHHHHHHHh
Q 007571 471 AQAYDMLALAKESLLDAILFINEC 494 (598)
Q Consensus 471 AqAy~~LGdy~EAl~d~~kALel~ 494 (598)
+.++...|++++|...+.+.++..
T Consensus 194 ~~~~~~~~d~~~a~~~l~~l~k~~ 217 (409)
T TIGR00540 194 EEAYIRSGAWQALDDIIDNMAKAG 217 (409)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHcC
Confidence 999999999999999999888774
No 142
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=97.18 E-value=0.00041 Score=49.83 Aligned_cols=32 Identities=19% Similarity=0.122 Sum_probs=30.3
Q ss_pred HHHHHHhCCCCCcCHHHHHHHHHHHHHhhcHHHHH
Q 007571 450 ATRALCLHNPLNRHAKSLWRRAQAYDMLALAKESL 484 (598)
Q Consensus 450 ~~kALeLdP~~~~~~KAyyRRAqAy~~LGdy~EAl 484 (598)
|++||+++|+ ++.+|+++|.+|...|++++|+
T Consensus 2 y~kAie~~P~---n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 2 YKKAIELNPN---NAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred hHHHHHHCCC---CHHHHHHHHHHHHHCcCHHhhc
Confidence 7899999999 9999999999999999999986
No 143
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=97.18 E-value=0.004 Score=74.20 Aligned_cols=106 Identities=8% Similarity=0.001 Sum_probs=83.5
Q ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCch----H----------HHHHHHHHHHHHHHHcCChHHHHHHH
Q 007571 385 QAAALVVKLEGNSLFSAGNISGAASKYSEALALCPMRSK----K----------ERVVLYSNRAQCHLLMQQPLAAISDA 450 (598)
Q Consensus 385 ~~~A~~lKeeGN~lfk~GdY~eAIe~YskALel~P~~~~----~----------~~a~ly~NRA~cylKLgdyeeAI~D~ 450 (598)
......+.-.|-.+++.+++..|... .++...+.+.+ + ....++..+|.||-++|++++|+..+
T Consensus 62 P~~i~~yy~~G~l~~q~~~~~~~~lv--~~l~~~~~~~~~~~ve~~~~~i~~~~~~k~Al~~LA~~Ydk~g~~~ka~~~y 139 (906)
T PRK14720 62 KKSISALYISGILSLSRRPLNDSNLL--NLIDSFSQNLKWAIVEHICDKILLYGENKLALRTLAEAYAKLNENKKLKGVW 139 (906)
T ss_pred CcceehHHHHHHHHHhhcchhhhhhh--hhhhhcccccchhHHHHHHHHHHhhhhhhHHHHHHHHHHHHcCChHHHHHHH
Confidence 34455566666666777666666555 55555444310 0 01368888999999999999999999
Q ss_pred HHHHHhCCCCCcCHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHhcc
Q 007571 451 TRALCLHNPLNRHAKSLWRRAQAYDMLALAKESLLDAILFINECSQ 496 (598)
Q Consensus 451 ~kALeLdP~~~~~~KAyyRRAqAy~~LGdy~EAl~d~~kALel~~k 496 (598)
+++|+++|+ ++-++.+.|..|... +.++|+..+.+|+...-+
T Consensus 140 er~L~~D~~---n~~aLNn~AY~~ae~-dL~KA~~m~~KAV~~~i~ 181 (906)
T PRK14720 140 ERLVKADRD---NPEIVKKLATSYEEE-DKEKAITYLKKAIYRFIK 181 (906)
T ss_pred HHHHhcCcc---cHHHHHHHHHHHHHh-hHHHHHHHHHHHHHHHHh
Confidence 999999999 999999999999999 999999999999988765
No 144
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.18 E-value=0.0027 Score=71.29 Aligned_cols=97 Identities=22% Similarity=0.210 Sum_probs=92.5
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCcCHHHHHHHH
Q 007571 392 KLEGNSLFSAGNISGAASKYSEALALCPMRSKKERVVLYSNRAQCHLLMQQPLAAISDATRALCLHNPLNRHAKSLWRRA 471 (598)
Q Consensus 392 KeeGN~lfk~GdY~eAIe~YskALel~P~~~~~~~a~ly~NRA~cylKLgdyeeAI~D~~kALeLdP~~~~~~KAyyRRA 471 (598)
..+|..++++|+..+|+-.|..|++.+|.+ +.+|.-+|.++...++=..||....+++++||+ |.+++..+|
T Consensus 289 f~eG~~lm~nG~L~~A~LafEAAVkqdP~h-----aeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~---NleaLmaLA 360 (579)
T KOG1125|consen 289 FKEGCNLMKNGDLSEAALAFEAAVKQDPQH-----AEAWQKLGITQAENENEQNAISALRRCLELDPT---NLEALMALA 360 (579)
T ss_pred HHHHHHHHhcCCchHHHHHHHHHHhhChHH-----HHHHHHhhhHhhhccchHHHHHHHHHHHhcCCc---cHHHHHHHH
Confidence 468999999999999999999999999998 999999999999999999999999999999999 999999999
Q ss_pred HHHHHhhcHHHHHHHHHHHHHHhcc
Q 007571 472 QAYDMLALAKESLLDAILFINECSQ 496 (598)
Q Consensus 472 qAy~~LGdy~EAl~d~~kALel~~k 496 (598)
..|...|.-.+|+..+.+=|...|+
T Consensus 361 VSytNeg~q~~Al~~L~~Wi~~~p~ 385 (579)
T KOG1125|consen 361 VSYTNEGLQNQALKMLDKWIRNKPK 385 (579)
T ss_pred HHHhhhhhHHHHHHHHHHHHHhCcc
Confidence 9999999999999999998877654
No 145
>PRK11906 transcriptional regulator; Provisional
Probab=97.17 E-value=0.0023 Score=70.77 Aligned_cols=88 Identities=9% Similarity=-0.160 Sum_probs=83.2
Q ss_pred cCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCcCHHHHHHHHHHHHHhhcH
Q 007571 401 AGNISGAASKYSEALALCPMRSKKERVVLYSNRAQCHLLMQQPLAAISDATRALCLHNPLNRHAKSLWRRAQAYDMLALA 480 (598)
Q Consensus 401 ~GdY~eAIe~YskALel~P~~~~~~~a~ly~NRA~cylKLgdyeeAI~D~~kALeLdP~~~~~~KAyyRRAqAy~~LGdy 480 (598)
..+-.+|.+.-.+|++++|.+ +.++..+|.++...++++.|+..+++|+.++|+ .+.++|.+|..+...|+.
T Consensus 317 ~~~~~~a~~~A~rAveld~~D-----a~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn---~A~~~~~~~~~~~~~G~~ 388 (458)
T PRK11906 317 ELAAQKALELLDYVSDITTVD-----GKILAIMGLITGLSGQAKVSHILFEQAKIHSTD---IASLYYYRALVHFHNEKI 388 (458)
T ss_pred hHHHHHHHHHHHHHHhcCCCC-----HHHHHHHHHHHHhhcchhhHHHHHHHHhhcCCc---cHHHHHHHHHHHHHcCCH
Confidence 345678899999999999999 999999999999999999999999999999999 999999999999999999
Q ss_pred HHHHHHHHHHHHHhcc
Q 007571 481 KESLLDAILFINECSQ 496 (598)
Q Consensus 481 ~EAl~d~~kALel~~k 496 (598)
++|+..+++++++.|.
T Consensus 389 ~~a~~~i~~alrLsP~ 404 (458)
T PRK11906 389 EEARICIDKSLQLEPR 404 (458)
T ss_pred HHHHHHHHHHhccCch
Confidence 9999999999999875
No 146
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=97.11 E-value=0.0011 Score=45.97 Aligned_cols=32 Identities=19% Similarity=0.024 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC
Q 007571 428 VLYSNRAQCHLLMQQPLAAISDATRALCLHNP 459 (598)
Q Consensus 428 ~ly~NRA~cylKLgdyeeAI~D~~kALeLdP~ 459 (598)
.++.++|.+|+++|+|++|+..++++++++|+
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~ 33 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKALELDPN 33 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHCcC
Confidence 45677777777777777777777777777776
No 147
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=97.10 E-value=0.00051 Score=49.37 Aligned_cols=34 Identities=29% Similarity=0.272 Sum_probs=31.8
Q ss_pred HHHHHHHhCCCCchHHHHHHHHHHHHHHHHcCChHHHHH
Q 007571 410 KYSEALALCPMRSKKERVVLYSNRAQCHLLMQQPLAAIS 448 (598)
Q Consensus 410 ~YskALel~P~~~~~~~a~ly~NRA~cylKLgdyeeAI~ 448 (598)
+|++||+++|++ +.+|.|+|.+|...|++++|++
T Consensus 1 ~y~kAie~~P~n-----~~a~~nla~~~~~~g~~~~A~~ 34 (34)
T PF13431_consen 1 CYKKAIELNPNN-----AEAYNNLANLYLNQGDYEEAIA 34 (34)
T ss_pred ChHHHHHHCCCC-----HHHHHHHHHHHHHCcCHHhhcC
Confidence 489999999999 9999999999999999999973
No 148
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=97.10 E-value=0.017 Score=57.09 Aligned_cols=107 Identities=10% Similarity=0.021 Sum_probs=82.1
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHHHcC-----------ChHHHHHHHHHHHHh
Q 007571 388 ALVVKLEGNSLFSAGNISGAASKYSEALALCPMRSKKERVVLYSNRAQCHLLMQ-----------QPLAAISDATRALCL 456 (598)
Q Consensus 388 A~~lKeeGN~lfk~GdY~eAIe~YskALel~P~~~~~~~a~ly~NRA~cylKLg-----------dyeeAI~D~~kALeL 456 (598)
.......|..+|+.|+|..|+..|++-++..|.. .....++..+|.+++++. ...+|+..++..+..
T Consensus 42 ~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~--~~~~~A~Y~~g~~~~~~~~~~~~~~~D~~~~~~A~~~~~~li~~ 119 (203)
T PF13525_consen 42 PQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNS--PKADYALYMLGLSYYKQIPGILRSDRDQTSTRKAIEEFEELIKR 119 (203)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT---TTHHHHHHHHHHHHHHHHHHHH-TT---HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCC--cchhhHHHHHHHHHHHhCccchhcccChHHHHHHHHHHHHHHHH
Confidence 4567788999999999999999999999999986 345677888999887764 245899999999999
Q ss_pred CCCCCcCHH--------------HHHHHHHHHHHhhcHHHHHHHHHHHHHHhcc
Q 007571 457 HNPLNRHAK--------------SLWRRAQAYDMLALAKESLLDAILFINECSQ 496 (598)
Q Consensus 457 dP~~~~~~K--------------AyyRRAqAy~~LGdy~EAl~d~~kALel~~k 496 (598)
-|+..--.+ --+..|.-|+..|.|..|+.-|+.+++..|+
T Consensus 120 yP~S~y~~~A~~~l~~l~~~la~~e~~ia~~Y~~~~~y~aA~~r~~~v~~~yp~ 173 (203)
T PF13525_consen 120 YPNSEYAEEAKKRLAELRNRLAEHELYIARFYYKRGKYKAAIIRFQYVIENYPD 173 (203)
T ss_dssp -TTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHCTT-HHHHHHHHHHHHHHSTT
T ss_pred CcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCC
Confidence 998311112 2234577788899999999999999999986
No 149
>PF15015 NYD-SP12_N: Spermatogenesis-associated, N-terminal
Probab=97.04 E-value=0.0045 Score=67.53 Aligned_cols=107 Identities=19% Similarity=0.230 Sum_probs=89.4
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC--------ch-----HHHHHHHHHHHHHHHHcCChHHHHHHHHH
Q 007571 386 AAALVVKLEGNSLFSAGNISGAASKYSEALALCPMR--------SK-----KERVVLYSNRAQCHLLMQQPLAAISDATR 452 (598)
Q Consensus 386 ~~A~~lKeeGN~lfk~GdY~eAIe~YskALel~P~~--------~~-----~~~a~ly~NRA~cylKLgdyeeAI~D~~k 452 (598)
+........|...|++++|..|+-.|.-||+++..- +. .....+-..+..||+++++.+-|+....+
T Consensus 174 kwl~vAL~das~~yrqk~ya~Aa~rF~taLelcskg~a~~k~~~~~~~di~~vaSfIetklv~CYL~~rkpdlALnh~hr 253 (569)
T PF15015_consen 174 KWLQVALKDASSCYRQKKYAVAAGRFRTALELCSKGAALSKPFKASAEDISSVASFIETKLVTCYLRMRKPDLALNHSHR 253 (569)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhhhhhccCCCCCChhhHHHHHHHHHHHHHHhhhhcCCCchHHHHHhh
Confidence 345556677888999999999999999999987442 11 12345567789999999999999999999
Q ss_pred HHHhCCCCCcCHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHhc
Q 007571 453 ALCLHNPLNRHAKSLWRRAQAYDMLALAKESLLDAILFINECS 495 (598)
Q Consensus 453 ALeLdP~~~~~~KAyyRRAqAy~~LGdy~EAl~d~~kALel~~ 495 (598)
.|-++|. +..-+.|+|.++..|.+|.+|-..+.-|.=+.-
T Consensus 254 sI~lnP~---~frnHLrqAavfR~LeRy~eAarSamia~ymyw 293 (569)
T PF15015_consen 254 SINLNPS---YFRNHLRQAAVFRRLERYSEAARSAMIADYMYW 293 (569)
T ss_pred hhhcCcc---hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999 999999999999999999999988877765543
No 150
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=97.01 E-value=0.0046 Score=58.39 Aligned_cols=95 Identities=21% Similarity=0.095 Sum_probs=68.3
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHhCCCCCcCHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHhccCCCCchhhccCChHHH
Q 007571 433 RAQCHLLMQQPLAAISDATRALCLHNPLNRHAKSLWRRAQAYDMLALAKESLLDAILFINECSQSNDPDLSLRQNKVPDY 512 (598)
Q Consensus 433 RA~cylKLgdyeeAI~D~~kALeLdP~~~~~~KAyyRRAqAy~~LGdy~EAl~d~~kALel~~k~~d~~~~~r~~Ki~~~ 512 (598)
.|.+.-.-|+.+.|++-+.++|.+-|. ++.+|.+||+++...|+.++|+.|+.+++++......+. ....-....
T Consensus 49 ~~valaE~g~Ld~AlE~F~qal~l~P~---raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trta--cqa~vQRg~ 123 (175)
T KOG4555|consen 49 KAIALAEAGDLDGALELFGQALCLAPE---RASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTA--CQAFVQRGL 123 (175)
T ss_pred HHHHHHhccchHHHHHHHHHHHHhccc---chHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHH--HHHHHHHHH
Confidence 445556779999999999999999999 999999999999999999999999999999976422100 000012223
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 007571 513 AERLVKKQMRAAWLFREAAI 532 (598)
Q Consensus 513 ierlL~Kqk~a~~~f~eA~~ 532 (598)
+.|++..-..+...|+.|.+
T Consensus 124 lyRl~g~dd~AR~DFe~AA~ 143 (175)
T KOG4555|consen 124 LYRLLGNDDAARADFEAAAQ 143 (175)
T ss_pred HHHHhCchHHHHHhHHHHHH
Confidence 33444444455556665544
No 151
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=97.01 E-value=0.012 Score=62.68 Aligned_cols=106 Identities=13% Similarity=-0.007 Sum_probs=95.9
Q ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCcC
Q 007571 384 KQAAALVVKLEGNSLFSAGNISGAASKYSEALALCPMRSKKERVVLYSNRAQCHLLMQQPLAAISDATRALCLHNPLNRH 463 (598)
Q Consensus 384 ~~~~A~~lKeeGN~lfk~GdY~eAIe~YskALel~P~~~~~~~a~ly~NRA~cylKLgdyeeAI~D~~kALeLdP~~~~~ 463 (598)
+.+.|.-+.+.+..+....+++.|.....+|++.+|.. +.+-.-+|.+++..|+|..|++.+..+++-||.. -
T Consensus 176 ~~eIAqfyCELAq~~~~~~~~d~A~~~l~kAlqa~~~c-----vRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~y--l 248 (389)
T COG2956 176 RVEIAQFYCELAQQALASSDVDRARELLKKALQADKKC-----VRASIILGRVELAKGDYQKAVEALERVLEQNPEY--L 248 (389)
T ss_pred hhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhCccc-----eehhhhhhHHHHhccchHHHHHHHHHHHHhChHH--H
Confidence 35678888899999999999999999999999999998 7777889999999999999999999999999993 4
Q ss_pred HHHHHHHHHHHHHhhcHHHHHHHHHHHHHHhcc
Q 007571 464 AKSLWRRAQAYDMLALAKESLLDAILFINECSQ 496 (598)
Q Consensus 464 ~KAyyRRAqAy~~LGdy~EAl~d~~kALel~~k 496 (598)
+...-.+..||.++|+.++.+..+.++++..+.
T Consensus 249 ~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~~g 281 (389)
T COG2956 249 SEVLEMLYECYAQLGKPAEGLNFLRRAMETNTG 281 (389)
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHccCC
Confidence 577888899999999999999999999988764
No 152
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=96.99 E-value=0.0011 Score=72.05 Aligned_cols=116 Identities=16% Similarity=0.143 Sum_probs=92.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-chHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC
Q 007571 381 LHIKQAAALVVKLEGNSLFSAGNISGAASKYSEALALCPMR-SKKERVVLYSNRAQCHLLMQQPLAAISDATRALCLHNP 459 (598)
Q Consensus 381 lee~~~~A~~lKeeGN~lfk~GdY~eAIe~YskALel~P~~-~~~~~a~ly~NRA~cylKLgdyeeAI~D~~kALeLdP~ 459 (598)
+..+..+...+-+.||.+|-.|+|+.||..-..-|.+.... .+.-.-.+|+|+|.||.-+|+|+.|+++|.+++.+--.
T Consensus 188 lgDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAie 267 (639)
T KOG1130|consen 188 LGDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIE 267 (639)
T ss_pred hhhHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHH
Confidence 33456678889999999999999999999999888875443 12234678999999999999999999999987755221
Q ss_pred ---CCcCHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHhcc
Q 007571 460 ---LNRHAKSLWRRAQAYDMLALAKESLLDAILFINECSQ 496 (598)
Q Consensus 460 ---~~~~~KAyyRRAqAy~~LGdy~EAl~d~~kALel~~k 496 (598)
..--....|.+|.+|..+.+++.|+.++.+-|.+...
T Consensus 268 lg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqe 307 (639)
T KOG1130|consen 268 LGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQE 307 (639)
T ss_pred hcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0014578899999999999999999999988777553
No 153
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=96.99 E-value=0.0016 Score=48.92 Aligned_cols=42 Identities=24% Similarity=0.128 Sum_probs=39.0
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCcCHHHHHHHHH
Q 007571 428 VLYSNRAQCHLLMQQPLAAISDATRALCLHNPLNRHAKSLWRRAQ 472 (598)
Q Consensus 428 ~ly~NRA~cylKLgdyeeAI~D~~kALeLdP~~~~~~KAyyRRAq 472 (598)
.++..+|.+|..+|++++|+..++++++.+|+ ++.+++.+|+
T Consensus 2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~---~~~a~~~La~ 43 (44)
T PF13428_consen 2 AAWLALARAYRRLGQPDEAERLLRRALALDPD---DPEAWRALAQ 43 (44)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcC---CHHHHHHhhh
Confidence 46888999999999999999999999999999 9999998875
No 154
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=96.98 E-value=0.0055 Score=56.48 Aligned_cols=69 Identities=19% Similarity=0.024 Sum_probs=61.4
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCcCHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHhcc
Q 007571 428 VLYSNRAQCHLLMQQPLAAISDATRALCLHNPLNRHAKSLWRRAQAYDMLALAKESLLDAILFINECSQ 496 (598)
Q Consensus 428 ~ly~NRA~cylKLgdyeeAI~D~~kALeLdP~~~~~~KAyyRRAqAy~~LGdy~EAl~d~~kALel~~k 496 (598)
.+.+++|-+|-.+|+.++|+..|++|+....+...-..+++.+|.++..+|++++|+..+++++...|+
T Consensus 2 ~~~~~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~ 70 (120)
T PF12688_consen 2 RALYELAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPD 70 (120)
T ss_pred chHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC
Confidence 467899999999999999999999999976552224689999999999999999999999999998876
No 155
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=96.98 E-value=0.028 Score=57.56 Aligned_cols=108 Identities=9% Similarity=0.024 Sum_probs=86.0
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHHHcCC------------------hHHHHHH
Q 007571 388 ALVVKLEGNSLFSAGNISGAASKYSEALALCPMRSKKERVVLYSNRAQCHLLMQQ------------------PLAAISD 449 (598)
Q Consensus 388 A~~lKeeGN~lfk~GdY~eAIe~YskALel~P~~~~~~~a~ly~NRA~cylKLgd------------------yeeAI~D 449 (598)
.......|..+|+.++|.+|+..|++.++..|++ +....++..+|.|+..+++ -.+|+..
T Consensus 69 ~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~--~~~~~a~Y~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~ 146 (243)
T PRK10866 69 QQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTH--PNIDYVLYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRD 146 (243)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCC--CchHHHHHHHHHhhhhcchhhhhhccCCCccccCHHHHHHHHHH
Confidence 4457789999999999999999999999999987 3457778889998766641 2578999
Q ss_pred HHHHHHhCCCCCcCHHHH--------------HHHHHHHHHhhcHHHHHHHHHHHHHHhccC
Q 007571 450 ATRALCLHNPLNRHAKSL--------------WRRAQAYDMLALAKESLLDAILFINECSQS 497 (598)
Q Consensus 450 ~~kALeLdP~~~~~~KAy--------------yRRAqAy~~LGdy~EAl~d~~kALel~~k~ 497 (598)
+++.++.-|+..-...|. +..|.-|...|.|..|+.-++.+++..|+.
T Consensus 147 ~~~li~~yP~S~ya~~A~~rl~~l~~~la~~e~~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t 208 (243)
T PRK10866 147 FSKLVRGYPNSQYTTDATKRLVFLKDRLAKYELSVAEYYTKRGAYVAVVNRVEQMLRDYPDT 208 (243)
T ss_pred HHHHHHHCcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHCCCC
Confidence 999999999832112232 234566888999999999999999999873
No 156
>PRK10941 hypothetical protein; Provisional
Probab=96.97 E-value=0.0056 Score=63.81 Aligned_cols=79 Identities=15% Similarity=0.149 Sum_probs=71.6
Q ss_pred hCCCCchHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCcCHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHhcc
Q 007571 417 LCPMRSKKERVVLYSNRAQCHLLMQQPLAAISDATRALCLHNPLNRHAKSLWRRAQAYDMLALAKESLLDAILFINECSQ 496 (598)
Q Consensus 417 l~P~~~~~~~a~ly~NRA~cylKLgdyeeAI~D~~kALeLdP~~~~~~KAyyRRAqAy~~LGdy~EAl~d~~kALel~~k 496 (598)
+.|.+..........|+=.+|+..++|+.|+..++..+.++|+ .+.-+.-||.+|.++|.+..|..|++.+++.||+
T Consensus 171 L~~a~~~~il~Rml~nLK~~~~~~~~~~~AL~~~e~ll~l~P~---dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~ 247 (269)
T PRK10941 171 LDEADNIEVIRKLLDTLKAALMEEKQMELALRASEALLQFDPE---DPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPE 247 (269)
T ss_pred cCCCCHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHhCCC---CHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCC
Confidence 3455556778899999999999999999999999999999999 8888888999999999999999999999999997
Q ss_pred CC
Q 007571 497 SN 498 (598)
Q Consensus 497 ~~ 498 (598)
+.
T Consensus 248 dp 249 (269)
T PRK10941 248 DP 249 (269)
T ss_pred ch
Confidence 44
No 157
>PRK11906 transcriptional regulator; Provisional
Probab=96.96 E-value=0.0038 Score=69.07 Aligned_cols=101 Identities=14% Similarity=0.030 Sum_probs=88.5
Q ss_pred HHHHHHHHHHHcCC---HHHHHHHHHHHH---HhCCCCchHHHHHHHHHHHHHHHHc---------CChHHHHHHHHHHH
Q 007571 390 VVKLEGNSLFSAGN---ISGAASKYSEAL---ALCPMRSKKERVVLYSNRAQCHLLM---------QQPLAAISDATRAL 454 (598)
Q Consensus 390 ~lKeeGN~lfk~Gd---Y~eAIe~YskAL---el~P~~~~~~~a~ly~NRA~cylKL---------gdyeeAI~D~~kAL 454 (598)
.+.-+|...+.++. -..|+.++.+|+ .++|.. +.+|.-+|.||+.. .+-.+|+..+++|+
T Consensus 257 d~ylrg~~~~~~~t~~~~~~Al~lf~ra~~~~~ldp~~-----a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAv 331 (458)
T PRK11906 257 DEMLAGKKELYDFTPESIYRAMTIFDRLQNKSDIQTLK-----TECYCLLAECHMSLALHGKSELELAAQKALELLDYVS 331 (458)
T ss_pred HHHHHHHHHhhccCHHHHHHHHHHHHHHhhcccCCccc-----HHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHH
Confidence 55777777766554 578999999999 999998 99999999999865 23568899999999
Q ss_pred HhCCCCCcCHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHhccCC
Q 007571 455 CLHNPLNRHAKSLWRRAQAYDMLALAKESLLDAILFINECSQSN 498 (598)
Q Consensus 455 eLdP~~~~~~KAyyRRAqAy~~LGdy~EAl~d~~kALel~~k~~ 498 (598)
+++|. ++.|++.+|.++...++++.|...|++|+.+.|+..
T Consensus 332 eld~~---Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn~A 372 (458)
T PRK11906 332 DITTV---DGKILAIMGLITGLSGQAKVSHILFEQAKIHSTDIA 372 (458)
T ss_pred hcCCC---CHHHHHHHHHHHHhhcchhhHHHHHHHHhhcCCccH
Confidence 99999 999999999999999999999999999999998744
No 158
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=96.83 E-value=0.0029 Score=67.62 Aligned_cols=62 Identities=16% Similarity=-0.024 Sum_probs=58.3
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCcCHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHh
Q 007571 430 YSNRAQCHLLMQQPLAAISDATRALCLHNPLNRHAKSLWRRAQAYDMLALAKESLLDAILFINEC 494 (598)
Q Consensus 430 y~NRA~cylKLgdyeeAI~D~~kALeLdP~~~~~~KAyyRRAqAy~~LGdy~EAl~d~~kALel~ 494 (598)
.-.+|.-|+|+|+|++||.+|++++.++|. |+-.|.+||.||+.+..|..|..|+..|+.+.
T Consensus 100 iKE~GN~yFKQgKy~EAIDCYs~~ia~~P~---NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd 161 (536)
T KOG4648|consen 100 IKERGNTYFKQGKYEEAIDCYSTAIAVYPH---NPVYHINRALAYLKQKSFAQAEEDCEAAIALD 161 (536)
T ss_pred HHHhhhhhhhccchhHHHHHhhhhhccCCC---CccchhhHHHHHHHHHHHHHHHHhHHHHHHhh
Confidence 456889999999999999999999999999 89999999999999999999999999999874
No 159
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=96.82 E-value=0.013 Score=70.04 Aligned_cols=105 Identities=10% Similarity=-0.135 Sum_probs=88.0
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCC-----
Q 007571 387 AALVVKLEGNSLFSAGNISGAASKYSEALALCPMRSKKERVVLYSNRAQCHLLMQQPLAAISDATRALCLHNPLN----- 461 (598)
Q Consensus 387 ~A~~lKeeGN~lfk~GdY~eAIe~YskALel~P~~~~~~~a~ly~NRA~cylKLgdyeeAI~D~~kALeLdP~~~----- 461 (598)
...++-...+.+...+++++|+.....+++..|+. ..+|+-.|..|+..+++.++... .++.+-+...
T Consensus 30 n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~P~~-----i~~yy~~G~l~~q~~~~~~~~lv--~~l~~~~~~~~~~~v 102 (906)
T PRK14720 30 KFKELDDLIDAYKSENLTDEAKDICEEHLKEHKKS-----ISALYISGILSLSRRPLNDSNLL--NLIDSFSQNLKWAIV 102 (906)
T ss_pred hHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCcc-----eehHHHHHHHHHhhcchhhhhhh--hhhhhcccccchhHH
Confidence 56677778888889999999999999999999998 88888899999998888777665 6666555500
Q ss_pred -----------cCHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHhccCC
Q 007571 462 -----------RHAKSLWRRAQAYDMLALAKESLLDAILFINECSQSN 498 (598)
Q Consensus 462 -----------~~~KAyyRRAqAy~~LGdy~EAl~d~~kALel~~k~~ 498 (598)
.+-.|++.+|.||..+|++++|...|+++++..|++.
T Consensus 103 e~~~~~i~~~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~n~ 150 (906)
T PRK14720 103 EHICDKILLYGENKLALRTLAEAYAKLNENKKLKGVWERLVKADRDNP 150 (906)
T ss_pred HHHHHHHHhhhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCcccH
Confidence 0338999999999999999999999999999987643
No 160
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=96.80 E-value=0.0026 Score=44.49 Aligned_cols=33 Identities=18% Similarity=0.061 Sum_probs=29.8
Q ss_pred HHHHHHHHHHHHHhhcHHHHHHHHHHHHHHhcc
Q 007571 464 AKSLWRRAQAYDMLALAKESLLDAILFINECSQ 496 (598)
Q Consensus 464 ~KAyyRRAqAy~~LGdy~EAl~d~~kALel~~k 496 (598)
+++|+++|.+|..+|++++|+.+|++++++.|+
T Consensus 1 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~ 33 (34)
T PF00515_consen 1 AEAYYNLGNAYFQLGDYEEALEYYQRALELDPD 33 (34)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred CHHHHHHHHHHHHhCCchHHHHHHHHHHHHCcC
Confidence 478999999999999999999999999999774
No 161
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=96.75 E-value=0.0032 Score=66.95 Aligned_cols=98 Identities=17% Similarity=0.073 Sum_probs=79.8
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCcCHHHHHHHHHH
Q 007571 394 EGNSLFSAGNISGAASKYSEALALCPMRSKKERVVLYSNRAQCHLLMQQPLAAISDATRALCLHNPLNRHAKSLWRRAQA 473 (598)
Q Consensus 394 eGN~lfk~GdY~eAIe~YskALel~P~~~~~~~a~ly~NRA~cylKLgdyeeAI~D~~kALeLdP~~~~~~KAyyRRAqA 473 (598)
.|..+|-.++.+-|+.+|.+.|++.-.+ +.+|+|.|.|.+--++|+-++..+.+|+..-.++.-....||++|.+
T Consensus 330 ia~~yfY~~~PE~AlryYRRiLqmG~~s-----peLf~NigLCC~yaqQ~D~~L~sf~RAlstat~~~~aaDvWYNlg~v 404 (478)
T KOG1129|consen 330 IAVGYFYDNNPEMALRYYRRILQMGAQS-----PELFCNIGLCCLYAQQIDLVLPSFQRALSTATQPGQAADVWYNLGFV 404 (478)
T ss_pred eeeccccCCChHHHHHHHHHHHHhcCCC-----hHHHhhHHHHHHhhcchhhhHHHHHHHHhhccCcchhhhhhhcccee
Confidence 3444666666677777777777666655 89999999999999999999999999998754322267899999999
Q ss_pred HHHhhcHHHHHHHHHHHHHHhcc
Q 007571 474 YDMLALAKESLLDAILFINECSQ 496 (598)
Q Consensus 474 y~~LGdy~EAl~d~~kALel~~k 496 (598)
....|++..|...|+-+|...++
T Consensus 405 aV~iGD~nlA~rcfrlaL~~d~~ 427 (478)
T KOG1129|consen 405 AVTIGDFNLAKRCFRLALTSDAQ 427 (478)
T ss_pred EEeccchHHHHHHHHHHhccCcc
Confidence 99999999999999999887655
No 162
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.75 E-value=0.019 Score=59.46 Aligned_cols=88 Identities=11% Similarity=-0.118 Sum_probs=69.4
Q ss_pred cCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCcCHHHHHHHHHHHHHhh--
Q 007571 401 AGNISGAASKYSEALALCPMRSKKERVVLYSNRAQCHLLMQQPLAAISDATRALCLHNPLNRHAKSLWRRAQAYDMLA-- 478 (598)
Q Consensus 401 ~GdY~eAIe~YskALel~P~~~~~~~a~ly~NRA~cylKLgdyeeAI~D~~kALeLdP~~~~~~KAyyRRAqAy~~LG-- 478 (598)
+|+-.+||+...+-++..+.+ ..+|.-+|..|+.+|+|++|+-.+++++-++|. ++--+-|+|..++-+|
T Consensus 133 ~GK~l~aIk~ln~YL~~F~~D-----~EAW~eLaeiY~~~~~f~kA~fClEE~ll~~P~---n~l~f~rlae~~Yt~gg~ 204 (289)
T KOG3060|consen 133 QGKNLEAIKELNEYLDKFMND-----QEAWHELAEIYLSEGDFEKAAFCLEELLLIQPF---NPLYFQRLAEVLYTQGGA 204 (289)
T ss_pred cCCcHHHHHHHHHHHHHhcCc-----HHHHHHHHHHHHhHhHHHHHHHHHHHHHHcCCC---cHHHHHHHHHHHHHHhhH
Confidence 344444444444444444444 788999999999999999999999999999999 8888888899988876
Q ss_pred -cHHHHHHHHHHHHHHhcc
Q 007571 479 -LAKESLLDAILFINECSQ 496 (598)
Q Consensus 479 -dy~EAl~d~~kALel~~k 496 (598)
++.-|...|.++++++++
T Consensus 205 eN~~~arkyy~~alkl~~~ 223 (289)
T KOG3060|consen 205 ENLELARKYYERALKLNPK 223 (289)
T ss_pred HHHHHHHHHHHHHHHhChH
Confidence 567899999999999874
No 163
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.75 E-value=0.03 Score=57.93 Aligned_cols=76 Identities=18% Similarity=0.117 Sum_probs=42.7
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHHHcC---ChHHHHHHHHHHHHhCCCCCcCH
Q 007571 388 ALVVKLEGNSLFSAGNISGAASKYSEALALCPMRSKKERVVLYSNRAQCHLLMQ---QPLAAISDATRALCLHNPLNRHA 464 (598)
Q Consensus 388 A~~lKeeGN~lfk~GdY~eAIe~YskALel~P~~~~~~~a~ly~NRA~cylKLg---dyeeAI~D~~kALeLdP~~~~~~ 464 (598)
.+++.+.++.|+..|+|++|+-+|.+.+-+.|.+ +.++..+|.+++-+| ++.-|.+.|.+||+++|. +.
T Consensus 154 ~EAW~eLaeiY~~~~~f~kA~fClEE~ll~~P~n-----~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl~~~---~~ 225 (289)
T KOG3060|consen 154 QEAWHELAEIYLSEGDFEKAAFCLEELLLIQPFN-----PLYFQRLAEVLYTQGGAENLELARKYYERALKLNPK---NL 225 (289)
T ss_pred HHHHHHHHHHHHhHhHHHHHHHHHHHHHHcCCCc-----HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhChH---hH
Confidence 4455555555566666666666666666555655 555555555555544 455555566666666555 55
Q ss_pred HHHHHHH
Q 007571 465 KSLWRRA 471 (598)
Q Consensus 465 KAyyRRA 471 (598)
.++|-.-
T Consensus 226 ral~GI~ 232 (289)
T KOG3060|consen 226 RALFGIY 232 (289)
T ss_pred HHHHHHH
Confidence 5555443
No 164
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=96.72 E-value=0.042 Score=48.75 Aligned_cols=100 Identities=21% Similarity=0.072 Sum_probs=82.0
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CchHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCcCHHH
Q 007571 388 ALVVKLEGNSLFSAGNISGAASKYSEALALCPM-RSKKERVVLYSNRAQCHLLMQQPLAAISDATRALCLHNPLNRHAKS 466 (598)
Q Consensus 388 A~~lKeeGN~lfk~GdY~eAIe~YskALel~P~-~~~~~~a~ly~NRA~cylKLgdyeeAI~D~~kALeLdP~~~~~~KA 466 (598)
.......+..+...+++..|+..+.+++...+. . ...+.+++.++...+++..|+..+..++...|. ....
T Consensus 167 ~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~---~~~~ 238 (291)
T COG0457 167 AEALLALGALLEALGRYEEALELLEKALKLNPDDD-----AEALLNLGLLYLKLGKYEEALEYYEKALELDPD---NAEA 238 (291)
T ss_pred HHHHHHhhhHHHHhcCHHHHHHHHHHHHhhCcccc-----hHHHHHhhHHHHHcccHHHHHHHHHHHHhhCcc---cHHH
Confidence 444555555577888899999999999988887 5 778888888998888999999999999998888 7778
Q ss_pred HHHHHHHHHHhhcHHHHHHHHHHHHHHhc
Q 007571 467 LWRRAQAYDMLALAKESLLDAILFINECS 495 (598)
Q Consensus 467 yyRRAqAy~~LGdy~EAl~d~~kALel~~ 495 (598)
++..+..+...+.+++|...+.++++..+
T Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 267 (291)
T COG0457 239 LYNLALLLLELGRYEEALEALEKALELDP 267 (291)
T ss_pred HhhHHHHHHHcCCHHHHHHHHHHHHHhCc
Confidence 88888888877778888888888888765
No 165
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=96.69 E-value=0.0071 Score=69.58 Aligned_cols=105 Identities=10% Similarity=0.005 Sum_probs=96.6
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCcCHHH
Q 007571 387 AALVVKLEGNSLFSAGNISGAASKYSEALALCPMRSKKERVVLYSNRAQCHLLMQQPLAAISDATRALCLHNPLNRHAKS 466 (598)
Q Consensus 387 ~A~~lKeeGN~lfk~GdY~eAIe~YskALel~P~~~~~~~a~ly~NRA~cylKLgdyeeAI~D~~kALeLdP~~~~~~KA 466 (598)
....+...|....+.++++.|...|+.++.+.|++ ...|+|++.+|+++++-.+|-....+|++.+-. +.+.
T Consensus 518 q~~~wf~~G~~ALqlek~q~av~aF~rcvtL~Pd~-----~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~~---~w~i 589 (777)
T KOG1128|consen 518 QLGTWFGLGCAALQLEKEQAAVKAFHRCVTLEPDN-----AEAWNNLSTAYIRLKKKKRAFRKLKEALKCNYQ---HWQI 589 (777)
T ss_pred chhHHHhccHHHHHHhhhHHHHHHHHHHhhcCCCc-----hhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCCC---CCee
Confidence 34567889999999999999999999999999999 999999999999999999999999999999988 9999
Q ss_pred HHHHHHHHHHhhcHHHHHHHHHHHHHHhccCCC
Q 007571 467 LWRRAQAYDMLALAKESLLDAILFINECSQSND 499 (598)
Q Consensus 467 yyRRAqAy~~LGdy~EAl~d~~kALel~~k~~d 499 (598)
+-+--......|.+++|+..|.+.+....+..|
T Consensus 590 WENymlvsvdvge~eda~~A~~rll~~~~~~~d 622 (777)
T KOG1128|consen 590 WENYMLVSVDVGEFEDAIKAYHRLLDLRKKYKD 622 (777)
T ss_pred eechhhhhhhcccHHHHHHHHHHHHHhhhhccc
Confidence 999999999999999999999999887665443
No 166
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=96.68 E-value=0.0046 Score=73.04 Aligned_cols=99 Identities=20% Similarity=0.069 Sum_probs=92.0
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCcCHHHHHH
Q 007571 390 VVKLEGNSLFSAGNISGAASKYSEALALCPMRSKKERVVLYSNRAQCHLLMQQPLAAISDATRALCLHNPLNRHAKSLWR 469 (598)
Q Consensus 390 ~lKeeGN~lfk~GdY~eAIe~YskALel~P~~~~~~~a~ly~NRA~cylKLgdyeeAI~D~~kALeLdP~~~~~~KAyyR 469 (598)
.+-.+|--+.+.+++..|+..++.|+..+|.+ ..++.-++.+|..-|+|..|++.+++|..++|. +.-+-|.
T Consensus 564 nW~~rG~yyLea~n~h~aV~~fQsALR~dPkD-----~n~W~gLGeAY~~sGry~~AlKvF~kAs~LrP~---s~y~~fk 635 (1238)
T KOG1127|consen 564 NWVQRGPYYLEAHNLHGAVCEFQSALRTDPKD-----YNLWLGLGEAYPESGRYSHALKVFTKASLLRPL---SKYGRFK 635 (1238)
T ss_pred hhhhccccccCccchhhHHHHHHHHhcCCchh-----HHHHHHHHHHHHhcCceehHHHhhhhhHhcCcH---hHHHHHH
Confidence 34457888889999999999999999999999 999999999999999999999999999999999 9999999
Q ss_pred HHHHHHHhhcHHHHHHHHHHHHHHhcc
Q 007571 470 RAQAYDMLALAKESLLDAILFINECSQ 496 (598)
Q Consensus 470 RAqAy~~LGdy~EAl~d~~kALel~~k 496 (598)
.|.....+|+|++|+..+.+.+.....
T Consensus 636 ~A~~ecd~GkYkeald~l~~ii~~~s~ 662 (1238)
T KOG1127|consen 636 EAVMECDNGKYKEALDALGLIIYAFSL 662 (1238)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHHHHH
Confidence 999999999999999999998877654
No 167
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=96.66 E-value=0.017 Score=63.22 Aligned_cols=109 Identities=12% Similarity=-0.039 Sum_probs=98.8
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCcCHHH
Q 007571 387 AALVVKLEGNSLFSAGNISGAASKYSEALALCPMRSKKERVVLYSNRAQCHLLMQQPLAAISDATRALCLHNPLNRHAKS 466 (598)
Q Consensus 387 ~A~~lKeeGN~lfk~GdY~eAIe~YskALel~P~~~~~~~a~ly~NRA~cylKLgdyeeAI~D~~kALeLdP~~~~~~KA 466 (598)
.+..+.--|..+|..++|..|+.+-.|+|+.+|.+ ..+|.-.|..++.+++.++|+-.++.|+.+.|. ....
T Consensus 299 ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~~r~-----~~alilKG~lL~~~~R~~~A~IaFR~Aq~Lap~---rL~~ 370 (564)
T KOG1174|consen 299 TASHWFVHAQLLYDEKKFERALNFVEKCIDSEPRN-----HEALILKGRLLIALERHTQAVIAFRTAQMLAPY---RLEI 370 (564)
T ss_pred chhhhhhhhhhhhhhhhHHHHHHHHHHHhccCccc-----chHHHhccHHHHhccchHHHHHHHHHHHhcchh---hHHH
Confidence 45566677888999999999999999999999999 899999999999999999999999999999999 8899
Q ss_pred HHHHHHHHHHhhcHHHHHHHHHHHHHHhccCCCCchh
Q 007571 467 LWRRAQAYDMLALAKESLLDAILFINECSQSNDPDLS 503 (598)
Q Consensus 467 yyRRAqAy~~LGdy~EAl~d~~kALel~~k~~d~~~~ 503 (598)
|--+-.+|+..|+++||......+++..+++..+..+
T Consensus 371 Y~GL~hsYLA~~~~kEA~~~An~~~~~~~~sA~~LtL 407 (564)
T KOG1174|consen 371 YRGLFHSYLAQKRFKEANALANWTIRLFQNSARSLTL 407 (564)
T ss_pred HHHHHHHHHhhchHHHHHHHHHHHHHHhhcchhhhhh
Confidence 9999999999999999999999999999886654443
No 168
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=96.61 E-value=0.0054 Score=42.49 Aligned_cols=34 Identities=26% Similarity=0.324 Sum_probs=30.1
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 007571 388 ALVVKLEGNSLFSAGNISGAASKYSEALALCPMR 421 (598)
Q Consensus 388 A~~lKeeGN~lfk~GdY~eAIe~YskALel~P~~ 421 (598)
|..+...|..+++.|+|++|++.|.+|++++|++
T Consensus 1 a~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~ 34 (34)
T PF07719_consen 1 AEAWYYLGQAYYQLGNYEEAIEYFEKALELDPNN 34 (34)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTS
T ss_pred CHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCcCC
Confidence 4567889999999999999999999999999974
No 169
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=96.61 E-value=0.046 Score=48.54 Aligned_cols=94 Identities=20% Similarity=0.095 Sum_probs=40.6
Q ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCcCHHHHHHHHHHHHH
Q 007571 397 SLFSAGNISGAASKYSEALALCPMRSKKERVVLYSNRAQCHLLMQQPLAAISDATRALCLHNPLNRHAKSLWRRAQAYDM 476 (598)
Q Consensus 397 ~lfk~GdY~eAIe~YskALel~P~~~~~~~a~ly~NRA~cylKLgdyeeAI~D~~kALeLdP~~~~~~KAyyRRAqAy~~ 476 (598)
.++..|++..|+..|.+++...|. .......+.+++..+...+++..|+..+.+++...+.. ...++..++..+..
T Consensus 139 ~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~~~~~~~~ 214 (291)
T COG0457 139 ALYELGDYEEALELYEKALELDPE--LNELAEALLALGALLEALGRYEEALELLEKALKLNPDD--DAEALLNLGLLYLK 214 (291)
T ss_pred HHHHcCCHHHHHHHHHHHHhcCCC--ccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhCccc--chHHHHHhhHHHHH
Confidence 344444444444444444443331 00113333334444444444444444444444444430 13444444444444
Q ss_pred hhcHHHHHHHHHHHHHHh
Q 007571 477 LALAKESLLDAILFINEC 494 (598)
Q Consensus 477 LGdy~EAl~d~~kALel~ 494 (598)
.+++..|+..+..++...
T Consensus 215 ~~~~~~a~~~~~~~~~~~ 232 (291)
T COG0457 215 LGKYEEALEYYEKALELD 232 (291)
T ss_pred cccHHHHHHHHHHHHhhC
Confidence 444444444444444443
No 170
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.58 E-value=0.019 Score=59.57 Aligned_cols=69 Identities=6% Similarity=-0.128 Sum_probs=64.1
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCcCHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHhccCC
Q 007571 430 YSNRAQCHLLMQQPLAAISDATRALCLHNPLNRHAKSLWRRAQAYDMLALAKESLLDAILFINECSQSN 498 (598)
Q Consensus 430 y~NRA~cylKLgdyeeAI~D~~kALeLdP~~~~~~KAyyRRAqAy~~LGdy~EAl~d~~kALel~~k~~ 498 (598)
.+|-|.-+++.|+|..|..-+..-|+.-|+...-+.|+|.+|++++.+|+|++|...|..+++-.|+..
T Consensus 144 ~Y~~A~~~~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~ 212 (262)
T COG1729 144 LYNAALDLYKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSP 212 (262)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCC
Confidence 788999999999999999999999999998655679999999999999999999999999999998843
No 171
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=96.56 E-value=0.034 Score=62.22 Aligned_cols=127 Identities=19% Similarity=0.123 Sum_probs=99.4
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCcCHHH
Q 007571 387 AALVVKLEGNSLFSAGNISGAASKYSEALALCPMRSKKERVVLYSNRAQCHLLMQQPLAAISDATRALCLHNPLNRHAKS 466 (598)
Q Consensus 387 ~A~~lKeeGN~lfk~GdY~eAIe~YskALel~P~~~~~~~a~ly~NRA~cylKLgdyeeAI~D~~kALeLdP~~~~~~KA 466 (598)
-+--+..+|.-+..+|+.++|++.|++|+..... .++....++..+|-||+-+.+|++|...+.+.++.+ + +.++
T Consensus 266 s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~-~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s-~---WSka 340 (468)
T PF10300_consen 266 SALFLFFEGRLERLKGNLEEAIESFERAIESQSE-WKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKES-K---WSKA 340 (468)
T ss_pred cHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhh-HHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhcc-c---cHHH
Confidence 4666888999999999999999999999954333 456778999999999999999999999999998854 3 6677
Q ss_pred HHH--HHHHHHHhhcH-------HHHHHHHHHHHHHhccCCCCchhhccCChHHHHHHHHHHHHHH
Q 007571 467 LWR--RAQAYDMLALA-------KESLLDAILFINECSQSNDPDLSLRQNKVPDYAERLVKKQMRA 523 (598)
Q Consensus 467 yyR--RAqAy~~LGdy-------~EAl~d~~kALel~~k~~d~~~~~r~~Ki~~~ierlL~Kqk~a 523 (598)
+|. .|-|+.++|+. ++|...|.++-....+.. ++...+...+.|-+.|....
T Consensus 341 ~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp~l~~k~~-----gk~lp~E~Fv~RK~~~~~~~ 401 (468)
T PF10300_consen 341 FYAYLAAACLLMLGREEEAKEHKKEAEELFRKVPKLKQKKA-----GKSLPLEKFVIRKAQKYEKQ 401 (468)
T ss_pred HHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHHHHHhhhc-----cCCCChHHHHHHHHHHHHhc
Confidence 665 58899999999 888888888777765411 23445667776666655544
No 172
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=96.55 E-value=0.0067 Score=66.18 Aligned_cols=107 Identities=18% Similarity=0.162 Sum_probs=87.1
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC---CCcC
Q 007571 387 AALVVKLEGNSLFSAGNISGAASKYSEALALCPMRSKKERVVLYSNRAQCHLLMQQPLAAISDATRALCLHNP---LNRH 463 (598)
Q Consensus 387 ~A~~lKeeGN~lfk~GdY~eAIe~YskALel~P~~~~~~~a~ly~NRA~cylKLgdyeeAI~D~~kALeLdP~---~~~~ 463 (598)
...++-.+|..+++.|++...+..|.+||+.-..+ -.....+|+.++.+|+-+++|++|++.-+.-|.+.-. ..--
T Consensus 16 SCleLalEGERLck~gdcraGv~ff~aA~qvGTeD-l~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lgdklGE 94 (639)
T KOG1130|consen 16 SCLELALEGERLCKMGDCRAGVDFFKAALQVGTED-LSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLGDKLGE 94 (639)
T ss_pred HHHHHHHHHHHHHhccchhhhHHHHHHHHHhcchH-HHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhcchhcc
Confidence 46678899999999999999999999999987664 4456889999999999999999999866554443211 0115
Q ss_pred HHHHHHHHHHHHHhhcHHHHHHHHHHHHHHh
Q 007571 464 AKSLWRRAQAYDMLALAKESLLDAILFINEC 494 (598)
Q Consensus 464 ~KAyyRRAqAy~~LGdy~EAl~d~~kALel~ 494 (598)
.|+--++|..+..+|.|++|+.++.+-|...
T Consensus 95 AKssgNLGNtlKv~G~fdeA~~cc~rhLd~a 125 (639)
T KOG1130|consen 95 AKSSGNLGNTLKVKGAFDEALTCCFRHLDFA 125 (639)
T ss_pred ccccccccchhhhhcccchHHHHHHHHhHHH
Confidence 6888889999999999999999988877653
No 173
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=96.53 E-value=0.013 Score=61.63 Aligned_cols=83 Identities=16% Similarity=0.011 Sum_probs=67.3
Q ss_pred CCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCcCHHHHHHHHHHHHHhhcHH
Q 007571 402 GNISGAASKYSEALALCPMRSKKERVVLYSNRAQCHLLMQQPLAAISDATRALCLHNPLNRHAKSLWRRAQAYDMLALAK 481 (598)
Q Consensus 402 GdY~eAIe~YskALel~P~~~~~~~a~ly~NRA~cylKLgdyeeAI~D~~kALeLdP~~~~~~KAyyRRAqAy~~LGdy~ 481 (598)
.+|.+|.-.|++..+..|.. +.+++..|.|++.+|+|++|...+.+|++.+|+ ++.++.+++.+...+|+..
T Consensus 181 e~~~~A~y~f~El~~~~~~t-----~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~---~~d~LaNliv~~~~~gk~~ 252 (290)
T PF04733_consen 181 EKYQDAFYIFEELSDKFGST-----PKLLNGLAVCHLQLGHYEEAEELLEEALEKDPN---DPDTLANLIVCSLHLGKPT 252 (290)
T ss_dssp TCCCHHHHHHHHHHCCS--S-----HHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CC---HHHHHHHHHHHHHHTT-TC
T ss_pred hhHHHHHHHHHHHHhccCCC-----HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccC---CHHHHHHHHHHHHHhCCCh
Confidence 37999999999987776666 788899999999999999999999999999999 9999999999999999995
Q ss_pred HHHHHHHHHHH
Q 007571 482 ESLLDAILFIN 492 (598)
Q Consensus 482 EAl~d~~kALe 492 (598)
++..-|..-++
T Consensus 253 ~~~~~~l~qL~ 263 (290)
T PF04733_consen 253 EAAERYLSQLK 263 (290)
T ss_dssp HHHHHHHHHCH
T ss_pred hHHHHHHHHHH
Confidence 55544433333
No 174
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=96.47 E-value=0.035 Score=63.43 Aligned_cols=98 Identities=16% Similarity=0.043 Sum_probs=89.1
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCcCHHHHHH
Q 007571 390 VVKLEGNSLFSAGNISGAASKYSEALALCPMRSKKERVVLYSNRAQCHLLMQQPLAAISDATRALCLHNPLNRHAKSLWR 469 (598)
Q Consensus 390 ~lKeeGN~lfk~GdY~eAIe~YskALel~P~~~~~~~a~ly~NRA~cylKLgdyeeAI~D~~kALeLdP~~~~~~KAyyR 469 (598)
-+.--|-.+-..++|.+||++|+.|+.+.|++ ..++.-+|.....|++|+.....=.+.+++.|. +.-.|+-
T Consensus 77 CwHv~gl~~R~dK~Y~eaiKcy~nAl~~~~dN-----~qilrDlslLQ~QmRd~~~~~~tr~~LLql~~~---~ra~w~~ 148 (700)
T KOG1156|consen 77 CWHVLGLLQRSDKKYDEAIKCYRNALKIEKDN-----LQILRDLSLLQIQMRDYEGYLETRNQLLQLRPS---QRASWIG 148 (700)
T ss_pred hHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCc-----HHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhh---hHHHHHH
Confidence 35556667777889999999999999999999 899999999999999999999999999999999 8888999
Q ss_pred HHHHHHHhhcHHHHHHHHHHHHHHhc
Q 007571 470 RAQAYDMLALAKESLLDAILFINECS 495 (598)
Q Consensus 470 RAqAy~~LGdy~EAl~d~~kALel~~ 495 (598)
.|.++..+|++..|....+...+...
T Consensus 149 ~Avs~~L~g~y~~A~~il~ef~~t~~ 174 (700)
T KOG1156|consen 149 FAVAQHLLGEYKMALEILEEFEKTQN 174 (700)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 99999999999999999999888875
No 175
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=96.41 E-value=0.029 Score=63.63 Aligned_cols=98 Identities=17% Similarity=0.032 Sum_probs=84.2
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCcCHHHHH
Q 007571 389 LVVKLEGNSLFSAGNISGAASKYSEALALCPMRSKKERVVLYSNRAQCHLLMQQPLAAISDATRALCLHNPLNRHAKSLW 468 (598)
Q Consensus 389 ~~lKeeGN~lfk~GdY~eAIe~YskALel~P~~~~~~~a~ly~NRA~cylKLgdyeeAI~D~~kALeLdP~~~~~~KAyy 468 (598)
-.+.-.+..+-..|+|++|++..++||+..|+. +.+|.-+|.++-+.|++.+|....+.|-.+|+. ..-.--
T Consensus 195 w~~~~lAqhyd~~g~~~~Al~~Id~aI~htPt~-----~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~~---DRyiNs 266 (517)
T PF12569_consen 195 WTLYFLAQHYDYLGDYEKALEYIDKAIEHTPTL-----VELYMTKARILKHAGDLKEAAEAMDEARELDLA---DRYINS 266 (517)
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCc-----HHHHHHHHHHHHHCCCHHHHHHHHHHHHhCChh---hHHHHH
Confidence 345556777778999999999999999999998 999999999999999999999999999999998 444444
Q ss_pred HHHHHHHHhhcHHHHHHHHHHHHHHh
Q 007571 469 RRAQAYDMLALAKESLLDAILFINEC 494 (598)
Q Consensus 469 RRAqAy~~LGdy~EAl~d~~kALel~ 494 (598)
.-++.++..|+.++|...+..+.+..
T Consensus 267 K~aKy~LRa~~~e~A~~~~~~Ftr~~ 292 (517)
T PF12569_consen 267 KCAKYLLRAGRIEEAEKTASLFTRED 292 (517)
T ss_pred HHHHHHHHCCCHHHHHHHHHhhcCCC
Confidence 56888999999999988777775543
No 176
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=96.33 E-value=0.036 Score=59.21 Aligned_cols=99 Identities=13% Similarity=0.074 Sum_probs=83.4
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCcCHHHHHHHH
Q 007571 392 KLEGNSLFSAGNISGAASKYSEALALCPMRSKKERVVLYSNRAQCHLLMQQPLAAISDATRALCLHNPLNRHAKSLWRRA 471 (598)
Q Consensus 392 KeeGN~lfk~GdY~eAIe~YskALel~P~~~~~~~a~ly~NRA~cylKLgdyeeAI~D~~kALeLdP~~~~~~KAyyRRA 471 (598)
.+.|..+++.|-+.+|.+.++.+|+..|. +..|.-++.+|....++..|+..+...++.-|. ++.-+.-.|
T Consensus 227 ~Q~gkCylrLgm~r~AekqlqssL~q~~~------~dTfllLskvY~ridQP~~AL~~~~~gld~fP~---~VT~l~g~A 297 (478)
T KOG1129|consen 227 QQMGKCYLRLGMPRRAEKQLQSSLTQFPH------PDTFLLLSKVYQRIDQPERALLVIGEGLDSFPF---DVTYLLGQA 297 (478)
T ss_pred HHHHHHHHHhcChhhhHHHHHHHhhcCCc------hhHHHHHHHHHHHhccHHHHHHHHhhhhhcCCc---hhhhhhhhH
Confidence 45788889999999999999999988886 466777888888888888888888888888888 787777888
Q ss_pred HHHHHhhcHHHHHHHHHHHHHHhccCCC
Q 007571 472 QAYDMLALAKESLLDAILFINECSQSND 499 (598)
Q Consensus 472 qAy~~LGdy~EAl~d~~kALel~~k~~d 499 (598)
.++..++++++|++.|+.+++..+.+-.
T Consensus 298 Ri~eam~~~~~a~~lYk~vlk~~~~nvE 325 (478)
T KOG1129|consen 298 RIHEAMEQQEDALQLYKLVLKLHPINVE 325 (478)
T ss_pred HHHHHHHhHHHHHHHHHHHHhcCCccce
Confidence 8888888888888888888888776543
No 177
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=96.33 E-value=0.042 Score=63.80 Aligned_cols=124 Identities=18% Similarity=-0.012 Sum_probs=107.4
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCcCHHHHHHH
Q 007571 391 VKLEGNSLFSAGNISGAASKYSEALALCPMRSKKERVVLYSNRAQCHLLMQQPLAAISDATRALCLHNPLNRHAKSLWRR 470 (598)
Q Consensus 391 lKeeGN~lfk~GdY~eAIe~YskALel~P~~~~~~~a~ly~NRA~cylKLgdyeeAI~D~~kALeLdP~~~~~~KAyyRR 470 (598)
+...+..+.+.++-++|-.+..+|-.++|.. +..|+-+|.++...|++.+|.+.|..|+.+||+ ++.+.--+
T Consensus 653 wllaa~~~~~~~~~~~a~~CL~Ea~~~~~l~-----~~~~~~~G~~~~~~~~~~EA~~af~~Al~ldP~---hv~s~~Al 724 (799)
T KOG4162|consen 653 WLLAADLFLLSGNDDEARSCLLEASKIDPLS-----ASVYYLRGLLLEVKGQLEEAKEAFLVALALDPD---HVPSMTAL 724 (799)
T ss_pred HHHHHHHHHhcCCchHHHHHHHHHHhcchhh-----HHHHHHhhHHHHHHHhhHHHHHHHHHHHhcCCC---CcHHHHHH
Confidence 3445556667777888889999999999988 999999999999999999999999999999999 99999999
Q ss_pred HHHHHHhhcHHHHHH--HHHHHHHHhccCCCCchhhccCChHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 007571 471 AQAYDMLALAKESLL--DAILFINECSQSNDPDLSLRQNKVPDYAERLVKKQMRAAWLFREAAIKHG 535 (598)
Q Consensus 471 AqAy~~LGdy~EAl~--d~~kALel~~k~~d~~~~~r~~Ki~~~ierlL~Kqk~a~~~f~eA~~k~~ 535 (598)
|.++...|+..-|.. .+..+++..|. ..+++..+.+..++++.++.|..-|.
T Consensus 725 a~~lle~G~~~la~~~~~L~dalr~dp~-------------n~eaW~~LG~v~k~~Gd~~~Aaecf~ 778 (799)
T KOG4162|consen 725 AELLLELGSPRLAEKRSLLSDALRLDPL-------------NHEAWYYLGEVFKKLGDSKQAAECFQ 778 (799)
T ss_pred HHHHHHhCCcchHHHHHHHHHHHhhCCC-------------CHHHHHHHHHHHHHccchHHHHHHHH
Confidence 999999999888887 88889998775 23778888888888888887776644
No 178
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=96.30 E-value=0.046 Score=54.60 Aligned_cols=103 Identities=15% Similarity=0.046 Sum_probs=88.6
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCCCchHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCcCHHH
Q 007571 388 ALVVKLEGNSLFSAGNISGAASKYSEALAL-CPMRSKKERVVLYSNRAQCHLLMQQPLAAISDATRALCLHNPLNRHAKS 466 (598)
Q Consensus 388 A~~lKeeGN~lfk~GdY~eAIe~YskALel-~P~~~~~~~a~ly~NRA~cylKLgdyeeAI~D~~kALeLdP~~~~~~KA 466 (598)
...-...||.+...|+|.+|...|.+++.= .-.+ +..+..+|.+.+.++++..|..-.++..+.+|.. ..+..
T Consensus 89 vqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d-----~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~-r~pd~ 162 (251)
T COG4700 89 VQNRYRLANALAELGRYHEAVPHYQQALSGIFAHD-----AAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAF-RSPDG 162 (251)
T ss_pred HHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCC-----HHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCcc-CCCCc
Confidence 344556899999999999999999999963 3344 7778889999999999999999999999999873 25667
Q ss_pred HHHHHHHHHHhhcHHHHHHHHHHHHHHhcc
Q 007571 467 LWRRAQAYDMLALAKESLLDAILFINECSQ 496 (598)
Q Consensus 467 yyRRAqAy~~LGdy~EAl~d~~kALel~~k 496 (598)
..-.|.+|-.+|++.+|...|+.++...|.
T Consensus 163 ~Ll~aR~laa~g~~a~Aesafe~a~~~ypg 192 (251)
T COG4700 163 HLLFARTLAAQGKYADAESAFEVAISYYPG 192 (251)
T ss_pred hHHHHHHHHhcCCchhHHHHHHHHHHhCCC
Confidence 777899999999999999999999999885
No 179
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=96.22 E-value=0.059 Score=59.22 Aligned_cols=111 Identities=14% Similarity=-0.071 Sum_probs=95.8
Q ss_pred cCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCcCHHHHHHHHHHHHHhhcH
Q 007571 401 AGNISGAASKYSEALALCPMRSKKERVVLYSNRAQCHLLMQQPLAAISDATRALCLHNPLNRHAKSLWRRAQAYDMLALA 480 (598)
Q Consensus 401 ~GdY~eAIe~YskALel~P~~~~~~~a~ly~NRA~cylKLgdyeeAI~D~~kALeLdP~~~~~~KAyyRRAqAy~~LGdy 480 (598)
.++|+.|+..+.+..+.+|.. ..-+|.+++.+++-.+|++...++|..+|. ....+.-.|..++..+++
T Consensus 182 t~~~~~ai~lle~L~~~~pev--------~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~---d~~LL~~Qa~fLl~k~~~ 250 (395)
T PF09295_consen 182 TQRYDEAIELLEKLRERDPEV--------AVLLARVYLLMNEEVEAIRLLNEALKENPQ---DSELLNLQAEFLLSKKKY 250 (395)
T ss_pred cccHHHHHHHHHHHHhcCCcH--------HHHHHHHHHhcCcHHHHHHHHHHHHHhCCC---CHHHHHHHHHHHHhcCCH
Confidence 467999999999999988863 233788999999999999999999999999 899999999999999999
Q ss_pred HHHHHHHHHHHHHhccCCCCchhhccCChHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 007571 481 KESLLDAILFINECSQSNDPDLSLRQNKVPDYAERLVKKQMRAAWLFREAAIKHG 535 (598)
Q Consensus 481 ~EAl~d~~kALel~~k~~d~~~~~r~~Ki~~~ierlL~Kqk~a~~~f~eA~~k~~ 535 (598)
+.|+...+++++..|. ....+-.|.++.-....+++|.--.+
T Consensus 251 ~lAL~iAk~av~lsP~-------------~f~~W~~La~~Yi~~~d~e~ALlaLN 292 (395)
T PF09295_consen 251 ELALEIAKKAVELSPS-------------EFETWYQLAECYIQLGDFENALLALN 292 (395)
T ss_pred HHHHHHHHHHHHhCch-------------hHHHHHHHHHHHHhcCCHHHHHHHHh
Confidence 9999999999999886 34667778888888888888776633
No 180
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=96.22 E-value=0.021 Score=64.65 Aligned_cols=68 Identities=13% Similarity=0.040 Sum_probs=60.4
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCcCHH
Q 007571 389 LVVKLEGNSLFSAGNISGAASKYSEALALCPMRSKKERVVLYSNRAQCHLLMQQPLAAISDATRALCLHNPLNRHAK 465 (598)
Q Consensus 389 ~~lKeeGN~lfk~GdY~eAIe~YskALel~P~~~~~~~a~ly~NRA~cylKLgdyeeAI~D~~kALeLdP~~~~~~K 465 (598)
..+...|-.+...|++++|...|++|+.++|+ ...|..+|.++...|++++|+..+.+|+.++|. ++.
T Consensus 421 ~~~~ala~~~~~~g~~~~A~~~l~rAl~L~ps------~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P~---~pt 488 (517)
T PRK10153 421 RIYEILAVQALVKGKTDEAYQAINKAIDLEMS------WLNYVLLGKVYELKGDNRLAADAYSTAFNLRPG---ENT 488 (517)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC---Cch
Confidence 33445567777889999999999999999994 689999999999999999999999999999999 664
No 181
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=96.16 E-value=0.064 Score=63.88 Aligned_cols=99 Identities=8% Similarity=-0.120 Sum_probs=86.1
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHHHcCC-hHHHHHHHHHHHHhCCCCCcCHHHHHHH
Q 007571 392 KLEGNSLFSAGNISGAASKYSEALALCPMRSKKERVVLYSNRAQCHLLMQQ-PLAAISDATRALCLHNPLNRHAKSLWRR 470 (598)
Q Consensus 392 KeeGN~lfk~GdY~eAIe~YskALel~P~~~~~~~a~ly~NRA~cylKLgd-yeeAI~D~~kALeLdP~~~~~~KAyyRR 470 (598)
...+......++|++||+.-.++++.+|++ ..++.-+|.++..++. .++|-+.|-.|.+++|+ +.-|+-.+
T Consensus 6 LK~Ak~al~nk~YeealEqskkvLk~dpdN-----YnA~vFLGvAl~sl~q~le~A~ehYv~AaKldpd---nlLAWkGL 77 (1238)
T KOG1127|consen 6 LKSAKDALRNKEYEEALEQSKKVLKEDPDN-----YNAQVFLGVALWSLGQDLEKAAEHYVLAAKLDPD---NLLAWKGL 77 (1238)
T ss_pred HHHHHHHHhhccHHHHHHHHHHHHhcCCCc-----chhhhHHHHHHHhccCCHHHHHHHHHHHHhcChh---hhHHHHHH
Confidence 345666788899999999999999999999 8899999999999998 99999999999999999 88777777
Q ss_pred HHHHHH---hhcHHHHHHHHHHHHHHhccCC
Q 007571 471 AQAYDM---LALAKESLLDAILFINECSQSN 498 (598)
Q Consensus 471 AqAy~~---LGdy~EAl~d~~kALel~~k~~ 498 (598)
+..|.. .-+++++-..|.+++-..++++
T Consensus 78 ~nLye~~~dIl~ld~~~~~yq~~~l~le~q~ 108 (1238)
T KOG1127|consen 78 GNLYERYNDILDLDRAAKCYQRAVLILENQS 108 (1238)
T ss_pred HHHHHccchhhhhhHhHHHHHHHHHhhhhhh
Confidence 777766 5678889999999888877643
No 182
>KOG4814 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.16 E-value=0.037 Score=63.22 Aligned_cols=105 Identities=11% Similarity=-0.021 Sum_probs=92.5
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-chHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCcCHHHH
Q 007571 389 LVVKLEGNSLFSAGNISGAASKYSEALALCPMR-SKKERVVLYSNRAQCHLLMQQPLAAISDATRALCLHNPLNRHAKSL 467 (598)
Q Consensus 389 ~~lKeeGN~lfk~GdY~eAIe~YskALel~P~~-~~~~~a~ly~NRA~cylKLgdyeeAI~D~~kALeLdP~~~~~~KAy 467 (598)
.-+.+.+...|+..+|..+++.|...+...|.+ .....+.+.-|++.||+++.+.+.|++.+..|=+.+|. ++-.-
T Consensus 355 ~iLWn~A~~~F~~~~Y~~s~~~y~~Sl~~i~~D~~~~~FaK~qR~l~~CYL~L~QLD~A~E~~~EAE~~d~~---~~l~q 431 (872)
T KOG4814|consen 355 TLLWNTAKKLFKMEKYVVSIRFYKLSLKDIISDNYSDRFAKIQRALQVCYLKLEQLDNAVEVYQEAEEVDRQ---SPLCQ 431 (872)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhccc---cHHHH
Confidence 357788999999999999999999999998876 23445889999999999999999999999999999999 88777
Q ss_pred HHHHHHHHHhhcHHHHHHHHHHHHHHhcc
Q 007571 468 WRRAQAYDMLALAKESLLDAILFINECSQ 496 (598)
Q Consensus 468 yRRAqAy~~LGdy~EAl~d~~kALel~~k 496 (598)
+..-++...-|.-++|+....+.......
T Consensus 432 ~~~~~~~~~E~~Se~AL~~~~~~~s~~~~ 460 (872)
T KOG4814|consen 432 LLMLQSFLAEDKSEEALTCLQKIKSSEDE 460 (872)
T ss_pred HHHHHHHHHhcchHHHHHHHHHHHhhhcc
Confidence 77888899999999999998888776654
No 183
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=96.15 E-value=0.0097 Score=41.42 Aligned_cols=32 Identities=19% Similarity=0.059 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC
Q 007571 428 VLYSNRAQCHLLMQQPLAAISDATRALCLHNP 459 (598)
Q Consensus 428 ~ly~NRA~cylKLgdyeeAI~D~~kALeLdP~ 459 (598)
.+|.++|.+|.++|++++|+..+.++++++|+
T Consensus 2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~~ 33 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGDYEEALEYFEKALELNPD 33 (34)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 35666666677777777777777776666664
No 184
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=96.14 E-value=0.088 Score=55.44 Aligned_cols=112 Identities=13% Similarity=-0.015 Sum_probs=90.0
Q ss_pred CCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCcCHHHHHHHHHHHHHhhc--
Q 007571 402 GNISGAASKYSEALALCPMRSKKERVVLYSNRAQCHLLMQQPLAAISDATRALCLHNPLNRHAKSLWRRAQAYDMLAL-- 479 (598)
Q Consensus 402 GdY~eAIe~YskALel~P~~~~~~~a~ly~NRA~cylKLgdyeeAI~D~~kALeLdP~~~~~~KAyyRRAqAy~~LGd-- 479 (598)
.+.+..+.....-|..+|++ +.-|.-+|.+|+.+|++..|...|.+|+++.|+ ++..+.-.|.+++...+
T Consensus 136 ~~~~~l~a~Le~~L~~nP~d-----~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~---n~~~~~g~aeaL~~~a~~~ 207 (287)
T COG4235 136 QEMEALIARLETHLQQNPGD-----AEGWDLLGRAYMALGRASDALLAYRNALRLAGD---NPEILLGLAEALYYQAGQQ 207 (287)
T ss_pred ccHHHHHHHHHHHHHhCCCC-----chhHHHHHHHHHHhcchhHHHHHHHHHHHhCCC---CHHHHHHHHHHHHHhcCCc
Confidence 34567777788889999999 999999999999999999999999999999999 99999999999988754
Q ss_pred -HHHHHHHHHHHHHHhccCCCCchhhccCChHHHHHHHHHHHHHHHHHHHHHHHhc
Q 007571 480 -AKESLLDAILFINECSQSNDPDLSLRQNKVPDYAERLVKKQMRAAWLFREAAIKH 534 (598)
Q Consensus 480 -y~EAl~d~~kALel~~k~~d~~~~~r~~Ki~~~ierlL~Kqk~a~~~f~eA~~k~ 534 (598)
-.++...|++++++.+.+ . ...-+|.-..+.+..+++|..-+
T Consensus 208 ~ta~a~~ll~~al~~D~~~---------i----ral~lLA~~afe~g~~~~A~~~W 250 (287)
T COG4235 208 MTAKARALLRQALALDPAN---------I----RALSLLAFAAFEQGDYAEAAAAW 250 (287)
T ss_pred ccHHHHHHHHHHHhcCCcc---------H----HHHHHHHHHHHHcccHHHHHHHH
Confidence 678889999999997752 2 23334444555556666666553
No 185
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=96.01 E-value=0.043 Score=54.15 Aligned_cols=53 Identities=19% Similarity=0.028 Sum_probs=44.9
Q ss_pred CCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHHHcCC-----------hHHHHHHHHHHHHhCCC
Q 007571 402 GNISGAASKYSEALALCPMRSKKERVVLYSNRAQCHLLMQQ-----------PLAAISDATRALCLHNP 459 (598)
Q Consensus 402 GdY~eAIe~YskALel~P~~~~~~~a~ly~NRA~cylKLgd-----------yeeAI~D~~kALeLdP~ 459 (598)
.-|++||.+|++||.++|+. ..++.|+|.+|..++. |++|...+.+|...+|+
T Consensus 49 ~miedAisK~eeAL~I~P~~-----hdAlw~lGnA~ts~A~l~~d~~~A~~~F~kA~~~FqkAv~~~P~ 112 (186)
T PF06552_consen 49 KMIEDAISKFEEALKINPNK-----HDALWCLGNAYTSLAFLTPDTAEAEEYFEKATEYFQKAVDEDPN 112 (186)
T ss_dssp HHHHHHHHHHHHHHHH-TT------HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH-TT
T ss_pred HHHHHHHHHHHHHHhcCCch-----HHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHhcCCC
Confidence 35789999999999999998 9999999999987764 88899999999999998
No 186
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=95.99 E-value=0.0034 Score=67.00 Aligned_cols=85 Identities=26% Similarity=0.144 Sum_probs=75.7
Q ss_pred cCChHHHHHHHHHHHHhCCCCCcCHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHhccCCCCchhhccCChHHHHHHHHHH
Q 007571 440 MQQPLAAISDATRALCLHNPLNRHAKSLWRRAQAYDMLALAKESLLDAILFINECSQSNDPDLSLRQNKVPDYAERLVKK 519 (598)
Q Consensus 440 LgdyeeAI~D~~kALeLdP~~~~~~KAyyRRAqAy~~LGdy~EAl~d~~kALel~~k~~d~~~~~r~~Ki~~~ierlL~K 519 (598)
.|.++.||..|+.||+++|. ....|-.||.+++.+++...|+.||..++++.++... ..++..++.+++..
T Consensus 127 ~G~~~~ai~~~t~ai~lnp~---~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Dsa~------~ykfrg~A~rllg~ 197 (377)
T KOG1308|consen 127 DGEFDTAIELFTSAIELNPP---LAILYAKRASVFLKLKKPNAAIRDCDFAIEINPDSAK------GYKFRGYAERLLGN 197 (377)
T ss_pred CcchhhhhcccccccccCCc---hhhhcccccceeeeccCCchhhhhhhhhhccCccccc------ccchhhHHHHHhhc
Confidence 46699999999999999999 9999999999999999999999999999999886442 67888899999988
Q ss_pred HHHHHHHHHHHHHh
Q 007571 520 QMRAAWLFREAAIK 533 (598)
Q Consensus 520 qk~a~~~f~eA~~k 533 (598)
--.+.-.++.+.+.
T Consensus 198 ~e~aa~dl~~a~kl 211 (377)
T KOG1308|consen 198 WEEAAHDLALACKL 211 (377)
T ss_pred hHHHHHHHHHHHhc
Confidence 88888888877766
No 187
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=95.94 E-value=0.11 Score=59.66 Aligned_cols=104 Identities=12% Similarity=-0.072 Sum_probs=96.0
Q ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCcCH
Q 007571 385 QAAALVVKLEGNSLFSAGNISGAASKYSEALALCPMRSKKERVVLYSNRAQCHLLMQQPLAAISDATRALCLHNPLNRHA 464 (598)
Q Consensus 385 ~~~A~~lKeeGN~lfk~GdY~eAIe~YskALel~P~~~~~~~a~ly~NRA~cylKLgdyeeAI~D~~kALeLdP~~~~~~ 464 (598)
.+..+.+--+|-.+...|+-++|..+-..++..++.. .++|--.|..+..-++|++||+.|+.||.++|+ |.
T Consensus 38 ~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~~S-----~vCwHv~gl~~R~dK~Y~eaiKcy~nAl~~~~d---N~ 109 (700)
T KOG1156|consen 38 PEHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDLKS-----HVCWHVLGLLQRSDKKYDEAIKCYRNALKIEKD---NL 109 (700)
T ss_pred CccchhHHhccchhhcccchHHHHHHHHHHhccCccc-----chhHHHHHHHHhhhhhHHHHHHHHHHHHhcCCC---cH
Confidence 4566778888999999999999999999999999998 899999999999999999999999999999999 99
Q ss_pred HHHHHHHHHHHHhhcHHHHHHHHHHHHHHhcc
Q 007571 465 KSLWRRAQAYDMLALAKESLLDAILFINECSQ 496 (598)
Q Consensus 465 KAyyRRAqAy~~LGdy~EAl~d~~kALel~~k 496 (598)
..++.++....++|+|+.....=.+.++..|.
T Consensus 110 qilrDlslLQ~QmRd~~~~~~tr~~LLql~~~ 141 (700)
T KOG1156|consen 110 QILRDLSLLQIQMRDYEGYLETRNQLLQLRPS 141 (700)
T ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhh
Confidence 99999999999999999998888888888765
No 188
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=95.90 E-value=0.069 Score=50.83 Aligned_cols=70 Identities=16% Similarity=-0.104 Sum_probs=64.7
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCcCHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHhcc
Q 007571 427 VVLYSNRAQCHLLMQQPLAAISDATRALCLHNPLNRHAKSLWRRAQAYDMLALAKESLLDAILFINECSQ 496 (598)
Q Consensus 427 a~ly~NRA~cylKLgdyeeAI~D~~kALeLdP~~~~~~KAyyRRAqAy~~LGdy~EAl~d~~kALel~~k 496 (598)
..-+.+.|...++.|+|.+|++.++....--|...-...|.+.+|-+|+..++|++|+..++++|++.|.
T Consensus 10 ~~~ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~ 79 (142)
T PF13512_consen 10 PQELYQEAQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPT 79 (142)
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC
Confidence 5677889999999999999999999999998875556799999999999999999999999999999997
No 189
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=95.83 E-value=0.17 Score=58.25 Aligned_cols=90 Identities=12% Similarity=0.059 Sum_probs=71.5
Q ss_pred HHcCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCcCHHHHHHHHHHHHHhh
Q 007571 399 FSAGNISGAASKYSEALALCPMRSKKERVVLYSNRAQCHLLMQQPLAAISDATRALCLHNPLNRHAKSLWRRAQAYDMLA 478 (598)
Q Consensus 399 fk~GdY~eAIe~YskALel~P~~~~~~~a~ly~NRA~cylKLgdyeeAI~D~~kALeLdP~~~~~~KAyyRRAqAy~~LG 478 (598)
|...+|+.|-..+.+|-...|+ ..+|..-+..-.-+++.++|+..|+++|+.-|+ +.|.|.-+||++..++
T Consensus 629 ~en~e~eraR~llakar~~sgT------eRv~mKs~~~er~ld~~eeA~rllEe~lk~fp~---f~Kl~lmlGQi~e~~~ 699 (913)
T KOG0495|consen 629 FENDELERARDLLAKARSISGT------ERVWMKSANLERYLDNVEEALRLLEEALKSFPD---FHKLWLMLGQIEEQME 699 (913)
T ss_pred hccccHHHHHHHHHHHhccCCc------chhhHHHhHHHHHhhhHHHHHHHHHHHHHhCCc---hHHHHHHHhHHHHHHH
Confidence 4445555555555555555554 355555556666789999999999999999999 9999999999999999
Q ss_pred cHHHHHHHHHHHHHHhccC
Q 007571 479 LAKESLLDAILFINECSQS 497 (598)
Q Consensus 479 dy~EAl~d~~kALel~~k~ 497 (598)
+.+.|...|...++.||..
T Consensus 700 ~ie~aR~aY~~G~k~cP~~ 718 (913)
T KOG0495|consen 700 NIEMAREAYLQGTKKCPNS 718 (913)
T ss_pred HHHHHHHHHHhccccCCCC
Confidence 9999999999999999974
No 190
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.82 E-value=0.053 Score=61.51 Aligned_cols=97 Identities=15% Similarity=0.041 Sum_probs=70.3
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCcCHHHH
Q 007571 388 ALVVKLEGNSLFSAGNISGAASKYSEALALCPMRSKKERVVLYSNRAQCHLLMQQPLAAISDATRALCLHNPLNRHAKSL 467 (598)
Q Consensus 388 A~~lKeeGN~lfk~GdY~eAIe~YskALel~P~~~~~~~a~ly~NRA~cylKLgdyeeAI~D~~kALeLdP~~~~~~KAy 467 (598)
..+++..--.+.+.++|+.|+. -|+..+.. .......+-+|.|++++++.++|+.+++ .+++. ..+.+
T Consensus 46 ~~a~~cKvValIq~~ky~~ALk----~ikk~~~~--~~~~~~~fEKAYc~Yrlnk~Dealk~~~---~~~~~---~~~ll 113 (652)
T KOG2376|consen 46 EDAIRCKVVALIQLDKYEDALK----LIKKNGAL--LVINSFFFEKAYCEYRLNKLDEALKTLK---GLDRL---DDKLL 113 (652)
T ss_pred HhhHhhhHhhhhhhhHHHHHHH----HHHhcchh--hhcchhhHHHHHHHHHcccHHHHHHHHh---ccccc---chHHH
Confidence 3344445555566666666652 23333321 1113344789999999999999999998 56776 67899
Q ss_pred HHHHHHHHHhhcHHHHHHHHHHHHHHhcc
Q 007571 468 WRRAQAYDMLALAKESLLDAILFINECSQ 496 (598)
Q Consensus 468 yRRAqAy~~LGdy~EAl~d~~kALel~~k 496 (598)
--+||.++.+|+|++|+..|+..++...+
T Consensus 114 ~L~AQvlYrl~~ydealdiY~~L~kn~~d 142 (652)
T KOG2376|consen 114 ELRAQVLYRLERYDEALDIYQHLAKNNSD 142 (652)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHhcCCc
Confidence 99999999999999999999998877554
No 191
>PRK15331 chaperone protein SicA; Provisional
Probab=95.82 E-value=0.037 Score=53.84 Aligned_cols=79 Identities=18% Similarity=0.029 Sum_probs=65.9
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCcCHHHH
Q 007571 388 ALVVKLEGNSLFSAGNISGAASKYSEALALCPMRSKKERVVLYSNRAQCHLLMQQPLAAISDATRALCLHNPLNRHAKSL 467 (598)
Q Consensus 388 A~~lKeeGN~lfk~GdY~eAIe~YskALel~P~~~~~~~a~ly~NRA~cylKLgdyeeAI~D~~kALeLdP~~~~~~KAy 467 (598)
.+-+...|-.+-.+|+|++|+..|..|..+++++ +..++..|.||+.+|+...|...+..|+. .|. ...+
T Consensus 71 ~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~d-----p~p~f~agqC~l~l~~~~~A~~~f~~a~~-~~~----~~~l 140 (165)
T PRK15331 71 PDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKND-----YRPVFFTGQCQLLMRKAAKARQCFELVNE-RTE----DESL 140 (165)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCC-----CCccchHHHHHHHhCCHHHHHHHHHHHHh-Ccc----hHHH
Confidence 3446777888888999999999999999999888 66688899999999999999999999998 454 3556
Q ss_pred HHHHHHHHH
Q 007571 468 WRRAQAYDM 476 (598)
Q Consensus 468 yRRAqAy~~ 476 (598)
..||++++.
T Consensus 141 ~~~A~~~L~ 149 (165)
T PRK15331 141 RAKALVYLE 149 (165)
T ss_pred HHHHHHHHH
Confidence 667777664
No 192
>PRK04841 transcriptional regulator MalT; Provisional
Probab=95.80 E-value=0.24 Score=58.71 Aligned_cols=107 Identities=13% Similarity=0.026 Sum_probs=86.4
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC---CcCHHH
Q 007571 390 VVKLEGNSLFSAGNISGAASKYSEALALCPMRSKKERVVLYSNRAQCHLLMQQPLAAISDATRALCLHNPL---NRHAKS 466 (598)
Q Consensus 390 ~lKeeGN~lfk~GdY~eAIe~YskALel~P~~~~~~~a~ly~NRA~cylKLgdyeeAI~D~~kALeLdP~~---~~~~KA 466 (598)
.....|..++..|+|++|...+.+++...|.........++.++|.++...|++++|...+.+++.+.... .....+
T Consensus 454 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~ 533 (903)
T PRK04841 454 FNALRAQVAINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWS 533 (903)
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHH
Confidence 33447888999999999999999999876654333356678899999999999999999999999764321 002357
Q ss_pred HHHHHHHHHHhhcHHHHHHHHHHHHHHhcc
Q 007571 467 LWRRAQAYDMLALAKESLLDAILFINECSQ 496 (598)
Q Consensus 467 yyRRAqAy~~LGdy~EAl~d~~kALel~~k 496 (598)
+..+|.+++..|++++|...+.+++.....
T Consensus 534 ~~~la~~~~~~G~~~~A~~~~~~al~~~~~ 563 (903)
T PRK04841 534 LLQQSEILFAQGFLQAAYETQEKAFQLIEE 563 (903)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Confidence 778899999999999999999999988654
No 193
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.78 E-value=0.027 Score=59.50 Aligned_cols=95 Identities=19% Similarity=0.109 Sum_probs=78.7
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHh----CCCCCc
Q 007571 387 AALVVKLEGNSLFSAGNISGAASKYSEALALCPMRSKKERVVLYSNRAQCHLLMQQPLAAISDATRALCL----HNPLNR 462 (598)
Q Consensus 387 ~A~~lKeeGN~lfk~GdY~eAIe~YskALel~P~~~~~~~a~ly~NRA~cylKLgdyeeAI~D~~kALeL----dP~~~~ 462 (598)
.|..+.+.|-.+|+.|+|+.|++.|+.|++....+ +.+-+|.|.|++..++|+.|+......++. .|..++
T Consensus 143 ~Ad~~in~gCllykegqyEaAvqkFqaAlqvsGyq-----pllAYniALaHy~~~qyasALk~iSEIieRG~r~HPElgI 217 (459)
T KOG4340|consen 143 EADGQINLGCLLYKEGQYEAAVQKFQAALQVSGYQ-----PLLAYNLALAHYSSRQYASALKHISEIIERGIRQHPELGI 217 (459)
T ss_pred ccchhccchheeeccccHHHHHHHHHHHHhhcCCC-----chhHHHHHHHHHhhhhHHHHHHHHHHHHHhhhhcCCccCc
Confidence 57778899999999999999999999999998877 778889999999999999999999888753 232100
Q ss_pred ----------------------CHHHHHHHHHHHHHhhcHHHHHHH
Q 007571 463 ----------------------HAKSLWRRAQAYDMLALAKESLLD 486 (598)
Q Consensus 463 ----------------------~~KAyyRRAqAy~~LGdy~EAl~d 486 (598)
-..|+.-++-++++.|+++.|.+.
T Consensus 218 Gm~tegiDvrsvgNt~~lh~Sal~eAfNLKaAIeyq~~n~eAA~ea 263 (459)
T KOG4340|consen 218 GMTTEGIDVRSVGNTLVLHQSALVEAFNLKAAIEYQLRNYEAAQEA 263 (459)
T ss_pred cceeccCchhcccchHHHHHHHHHHHhhhhhhhhhhcccHHHHHHH
Confidence 135777778899999999988544
No 194
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=95.54 E-value=0.04 Score=41.24 Aligned_cols=41 Identities=22% Similarity=0.075 Sum_probs=36.6
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHH
Q 007571 390 VVKLEGNSLFSAGNISGAASKYSEALALCPMRSKKERVVLYSNRAQ 435 (598)
Q Consensus 390 ~lKeeGN~lfk~GdY~eAIe~YskALel~P~~~~~~~a~ly~NRA~ 435 (598)
.+...|..+...|++++|+..|+++|+.+|++ ..++..+|.
T Consensus 3 ~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~-----~~a~~~La~ 43 (44)
T PF13428_consen 3 AWLALARAYRRLGQPDEAERLLRRALALDPDD-----PEAWRALAQ 43 (44)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCC-----HHHHHHhhh
Confidence 46678999999999999999999999999999 888887764
No 195
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.49 E-value=0.049 Score=58.75 Aligned_cols=85 Identities=19% Similarity=-0.023 Sum_probs=61.5
Q ss_pred HHHcCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCcCHHHHHHHHHHHHHh
Q 007571 398 LFSAGNISGAASKYSEALALCPMRSKKERVVLYSNRAQCHLLMQQPLAAISDATRALCLHNPLNRHAKSLWRRAQAYDML 477 (598)
Q Consensus 398 lfk~GdY~eAIe~YskALel~P~~~~~~~a~ly~NRA~cylKLgdyeeAI~D~~kALeLdP~~~~~~KAyyRRAqAy~~L 477 (598)
+..+.+|..||...+-++..+... ...+-.-.|.||+.+|+|++|+..|+-+.+-+.. ..+...++|-++..+
T Consensus 32 fls~rDytGAislLefk~~~~~EE----E~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~~~---~~el~vnLAcc~FyL 104 (557)
T KOG3785|consen 32 FLSNRDYTGAISLLEFKLNLDREE----EDSLQLWIAHCYFHLGDYEEALNVYTFLMNKDDA---PAELGVNLACCKFYL 104 (557)
T ss_pred HHhcccchhHHHHHHHhhccchhh----hHHHHHHHHHHHHhhccHHHHHHHHHHHhccCCC---CcccchhHHHHHHHH
Confidence 456678888888887777554332 2344555788888888888888888888776555 678888888888888
Q ss_pred hcHHHHHHHHHH
Q 007571 478 ALAKESLLDAIL 489 (598)
Q Consensus 478 Gdy~EAl~d~~k 489 (598)
|.|.+|...-.+
T Consensus 105 g~Y~eA~~~~~k 116 (557)
T KOG3785|consen 105 GQYIEAKSIAEK 116 (557)
T ss_pred HHHHHHHHHHhh
Confidence 888888554333
No 196
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=95.46 E-value=0.021 Score=36.56 Aligned_cols=32 Identities=19% Similarity=0.029 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC
Q 007571 428 VLYSNRAQCHLLMQQPLAAISDATRALCLHNP 459 (598)
Q Consensus 428 ~ly~NRA~cylKLgdyeeAI~D~~kALeLdP~ 459 (598)
.++.++|.++..++++++|+..++++++++|+
T Consensus 2 ~~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~~ 33 (34)
T smart00028 2 EALYNLGNAYLKLGDYDEALEYYEKALELDPN 33 (34)
T ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHHHccCCC
Confidence 35677777777777777777777777777765
No 197
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=95.44 E-value=0.57 Score=45.83 Aligned_cols=107 Identities=12% Similarity=0.037 Sum_probs=80.0
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC---Cc
Q 007571 386 AAALVVKLEGNSLFSAGNISGAASKYSEALALCPMRSKKERVVLYSNRAQCHLLMQQPLAAISDATRALCLHNPL---NR 462 (598)
Q Consensus 386 ~~A~~lKeeGN~lfk~GdY~eAIe~YskALel~P~~~~~~~a~ly~NRA~cylKLgdyeeAI~D~~kALeLdP~~---~~ 462 (598)
+....+.+.|+-+++.|+++.|++.|+++.+.+... ......+.|.-.+.+..++|..+....++|-.+-... ..
T Consensus 34 sir~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~--~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~ 111 (177)
T PF10602_consen 34 SIRMALEDLADHYCKIGDLEEALKAYSRARDYCTSP--GHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWER 111 (177)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCH--HHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHH
Confidence 346778899999999999999999999999887653 5678889999999999999999999999987663331 00
Q ss_pred CHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHh
Q 007571 463 HAKSLWRRAQAYDMLALAKESLLDAILFINEC 494 (598)
Q Consensus 463 ~~KAyyRRAqAy~~LGdy~EAl~d~~kALel~ 494 (598)
..+.-...|.+++..++|.+|-..|..++...
T Consensus 112 ~nrlk~~~gL~~l~~r~f~~AA~~fl~~~~t~ 143 (177)
T PF10602_consen 112 RNRLKVYEGLANLAQRDFKEAAELFLDSLSTF 143 (177)
T ss_pred HHHHHHHHHHHHHHhchHHHHHHHHHccCcCC
Confidence 11223334666667778888876665554433
No 198
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.44 E-value=0.07 Score=57.62 Aligned_cols=96 Identities=18% Similarity=0.079 Sum_probs=60.1
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHHHcCC------------------------------
Q 007571 393 LEGNSLFSAGNISGAASKYSEALALCPMRSKKERVVLYSNRAQCHLLMQQ------------------------------ 442 (598)
Q Consensus 393 eeGN~lfk~GdY~eAIe~YskALel~P~~~~~~~a~ly~NRA~cylKLgd------------------------------ 442 (598)
-.|-.+|..|+|++|+..|+-+.+.+..+ +.+..|+|-|++-+|.
T Consensus 62 Wia~C~fhLgdY~~Al~~Y~~~~~~~~~~-----~el~vnLAcc~FyLg~Y~eA~~~~~ka~k~pL~~RLlfhlahklnd 136 (557)
T KOG3785|consen 62 WIAHCYFHLGDYEEALNVYTFLMNKDDAP-----AELGVNLACCKFYLGQYIEAKSIAEKAPKTPLCIRLLFHLAHKLND 136 (557)
T ss_pred HHHHHHHhhccHHHHHHHHHHHhccCCCC-----cccchhHHHHHHHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCc
Confidence 35777899999999999999888754433 3444444444444444
Q ss_pred ------------------------------hHHHHHHHHHHHHhCCCCCcCHHHHHHHHHHHHHhhcHHHHHHHHHHHHH
Q 007571 443 ------------------------------PLAAISDATRALCLHNPLNRHAKSLWRRAQAYDMLALAKESLLDAILFIN 492 (598)
Q Consensus 443 ------------------------------yeeAI~D~~kALeLdP~~~~~~KAyyRRAqAy~~LGdy~EAl~d~~kALe 492 (598)
|.+||..|+++|.-+|. +.-.-...|.||+++.-|+-+.+.+.-.++
T Consensus 137 Ek~~~~fh~~LqD~~EdqLSLAsvhYmR~HYQeAIdvYkrvL~dn~e---y~alNVy~ALCyyKlDYydvsqevl~vYL~ 213 (557)
T KOG3785|consen 137 EKRILTFHSSLQDTLEDQLSLASVHYMRMHYQEAIDVYKRVLQDNPE---YIALNVYMALCYYKLDYYDVSQEVLKVYLR 213 (557)
T ss_pred HHHHHHHHHHHhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcChh---hhhhHHHHHHHHHhcchhhhHHHHHHHHHH
Confidence 55555555555555555 444445556666666666666655555565
Q ss_pred Hhcc
Q 007571 493 ECSQ 496 (598)
Q Consensus 493 l~~k 496 (598)
..|+
T Consensus 214 q~pd 217 (557)
T KOG3785|consen 214 QFPD 217 (557)
T ss_pred hCCC
Confidence 5554
No 199
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=95.41 E-value=0.15 Score=54.32 Aligned_cols=104 Identities=16% Similarity=0.139 Sum_probs=82.6
Q ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCcCH
Q 007571 385 QAAALVVKLEGNSLFSAGNISGAASKYSEALALCPMRSKKERVVLYSNRAQCHLLMQQPLAAISDATRALCLHNPLNRHA 464 (598)
Q Consensus 385 ~~~A~~lKeeGN~lfk~GdY~eAIe~YskALel~P~~~~~~~a~ly~NRA~cylKLgdyeeAI~D~~kALeLdP~~~~~~ 464 (598)
.+.|......+....+.|+-++|...|..|+.+.|++ +.++...|...-.-++.-+|-..|.+||.++|. |.
T Consensus 113 ~kEA~~Al~~A~~~~~~Gk~ekA~~lfeHAlalaP~~-----p~~L~e~G~f~E~~~~iv~ADq~Y~~ALtisP~---ns 184 (472)
T KOG3824|consen 113 VKEAILALKAAGRSRKDGKLEKAMTLFEHALALAPTN-----PQILIEMGQFREMHNEIVEADQCYVKALTISPG---NS 184 (472)
T ss_pred hHHHHHHHHHHHHHHhccchHHHHHHHHHHHhcCCCC-----HHHHHHHhHHHHhhhhhHhhhhhhheeeeeCCC---ch
Confidence 3455555566777899999999999999999999999 999999999888889999999999999999999 99
Q ss_pred HHHHHHHHHHHHh----hcHHHHHHHHHHHHHHhcc
Q 007571 465 KSLWRRAQAYDML----ALAKESLLDAILFINECSQ 496 (598)
Q Consensus 465 KAyyRRAqAy~~L----Gdy~EAl~d~~kALel~~k 496 (598)
+|+.+|+...--. .++-+.+.+....+...++
T Consensus 185 eALvnR~RT~plV~~iD~r~l~svdskrd~~~~i~~ 220 (472)
T KOG3824|consen 185 EALVNRARTTPLVSAIDRRMLRSVDSKRDEFNHIQH 220 (472)
T ss_pred HHHhhhhccchHHHHHHHHHHHHHHHHHHHHhhccc
Confidence 9999998754333 2333444444555554443
No 200
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=95.34 E-value=0.13 Score=55.26 Aligned_cols=85 Identities=15% Similarity=0.032 Sum_probs=69.9
Q ss_pred HHHHhCCCC-chHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC-CCcCHHHHHHHHHHHHHhhcHHHHHHHHHHH
Q 007571 413 EALALCPMR-SKKERVVLYSNRAQCHLLMQQPLAAISDATRALCLHNP-LNRHAKSLWRRAQAYDMLALAKESLLDAILF 490 (598)
Q Consensus 413 kALel~P~~-~~~~~a~ly~NRA~cylKLgdyeeAI~D~~kALeLdP~-~~~~~KAyyRRAqAy~~LGdy~EAl~d~~kA 490 (598)
++|+.+|.. .....+.-|---|.=|+|-++|..|+..|++.|..... +.++.-.|.+||-|.+.+|+|..|+.|+.++
T Consensus 66 qslK~da~E~ep~E~Aen~KeeGN~~fK~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~a 145 (390)
T KOG0551|consen 66 QSLKADAEEGEPHEQAENYKEEGNEYFKEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAA 145 (390)
T ss_pred HHhhhccccCChHHHHHHHHHHhHHHHHhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Confidence 445556443 34457777888899999999999999999999987533 2347889999999999999999999999999
Q ss_pred HHHhccC
Q 007571 491 INECSQS 497 (598)
Q Consensus 491 Lel~~k~ 497 (598)
++..|..
T Consensus 146 l~~~P~h 152 (390)
T KOG0551|consen 146 LKLKPTH 152 (390)
T ss_pred HhcCcch
Confidence 9998863
No 201
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=95.18 E-value=0.3 Score=53.10 Aligned_cols=77 Identities=14% Similarity=0.012 Sum_probs=65.4
Q ss_pred HHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC--CcCHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHhccCCCC
Q 007571 424 KERVVLYSNRAQCHLLMQQPLAAISDATRALCLHNPL--NRHAKSLWRRAQAYDMLALAKESLLDAILFINECSQSNDP 500 (598)
Q Consensus 424 ~~~a~ly~NRA~cylKLgdyeeAI~D~~kALeLdP~~--~~~~KAyyRRAqAy~~LGdy~EAl~d~~kALel~~k~~d~ 500 (598)
.....+|.|++..+.++.+|.++++.++..+.+.... .....++.-.|.|+..++.|+.+++.|++|++...+..|+
T Consensus 80 ~~~~ea~lnlar~~e~l~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~ 158 (518)
T KOG1941|consen 80 DFLLEAYLNLARSNEKLCEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDA 158 (518)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCc
Confidence 3467899999999999999999999999999884331 1244677889999999999999999999999998886664
No 202
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.13 E-value=0.36 Score=55.00 Aligned_cols=96 Identities=10% Similarity=-0.021 Sum_probs=73.5
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHhC--------------
Q 007571 392 KLEGNSLFSAGNISGAASKYSEALALCPMRSKKERVVLYSNRAQCHLLMQQPLAAISDATRALCLH-------------- 457 (598)
Q Consensus 392 KeeGN~lfk~GdY~eAIe~YskALel~P~~~~~~~a~ly~NRA~cylKLgdyeeAI~D~~kALeLd-------------- 457 (598)
.+++-..|+.++.++|+..|+ -+++.+ ..+.--+|+.++++++|++|+..|...++-+
T Consensus 83 fEKAYc~Yrlnk~Dealk~~~---~~~~~~-----~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a 154 (652)
T KOG2376|consen 83 FEKAYCEYRLNKLDEALKTLK---GLDRLD-----DKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLA 154 (652)
T ss_pred HHHHHHHHHcccHHHHHHHHh---cccccc-----hHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHH
Confidence 577888889999999999888 334443 4455568899999999999998888764322
Q ss_pred -------------CCC-CcCHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHhc
Q 007571 458 -------------NPL-NRHAKSLWRRAQAYDMLALAKESLLDAILFINECS 495 (598)
Q Consensus 458 -------------P~~-~~~~KAyyRRAqAy~~LGdy~EAl~d~~kALel~~ 495 (598)
|.. .-....+|+.|-++...|+|.+|++-+.+++++|.
T Consensus 155 ~~a~l~~~~~q~v~~v~e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~ 206 (652)
T KOG2376|consen 155 VAAALQVQLLQSVPEVPEDSYELLYNTACILIENGKYNQAIELLEKALRICR 206 (652)
T ss_pred HHHhhhHHHHHhccCCCcchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHH
Confidence 211 01457899999999999999999999999976665
No 203
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=94.99 E-value=0.056 Score=37.51 Aligned_cols=31 Identities=13% Similarity=0.087 Sum_probs=29.5
Q ss_pred HHHHHHHHHHHHhhcHHHHHHHHHHHHHHhc
Q 007571 465 KSLWRRAQAYDMLALAKESLLDAILFINECS 495 (598)
Q Consensus 465 KAyyRRAqAy~~LGdy~EAl~d~~kALel~~ 495 (598)
++|+.+|.+|..+|++++|+..|++++++.|
T Consensus 2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~ 32 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGDYEEALEYFEKALELNP 32 (34)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 6899999999999999999999999999976
No 204
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=94.96 E-value=0.05 Score=37.14 Aligned_cols=31 Identities=23% Similarity=0.238 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHhhcHHHHHHHHHHHHHHhcc
Q 007571 466 SLWRRAQAYDMLALAKESLLDAILFINECSQ 496 (598)
Q Consensus 466 AyyRRAqAy~~LGdy~EAl~d~~kALel~~k 496 (598)
|+|++|.++..+|++++|+..|+++++..|+
T Consensus 2 a~~~~a~~~~~~g~~~~A~~~~~~~~~~~P~ 32 (33)
T PF13174_consen 2 ALYRLARCYYKLGDYDEAIEYFQRLIKRYPD 32 (33)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHCcC
Confidence 5666666666666666666666666666654
No 205
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=94.88 E-value=0.024 Score=58.25 Aligned_cols=63 Identities=16% Similarity=0.045 Sum_probs=57.0
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHhCCCCCcCHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHhcc
Q 007571 431 SNRAQCHLLMQQPLAAISDATRALCLHNPLNRHAKSLWRRAQAYDMLALAKESLLDAILFINECSQ 496 (598)
Q Consensus 431 ~NRA~cylKLgdyeeAI~D~~kALeLdP~~~~~~KAyyRRAqAy~~LGdy~EAl~d~~kALel~~k 496 (598)
.--+.+++.-++|..||..|.+||.++|. .+.-|-+||.+|+++.+++....|+.+++++.++
T Consensus 14 kE~gnk~f~~k~y~~ai~~y~raI~~nP~---~~~Y~tnralchlk~~~~~~v~~dcrralql~~N 76 (284)
T KOG4642|consen 14 KEQGNKCFIPKRYDDAIDCYSRAICINPT---VASYYTNRALCHLKLKHWEPVEEDCRRALQLDPN 76 (284)
T ss_pred HhccccccchhhhchHHHHHHHHHhcCCC---cchhhhhHHHHHHHhhhhhhhhhhHHHHHhcChH
Confidence 33456777788999999999999999999 7888888999999999999999999999999886
No 206
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=94.86 E-value=0.35 Score=55.82 Aligned_cols=102 Identities=19% Similarity=0.061 Sum_probs=92.3
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCcCHHHHH
Q 007571 389 LVVKLEGNSLFSAGNISGAASKYSEALALCPMRSKKERVVLYSNRAQCHLLMQQPLAAISDATRALCLHNPLNRHAKSLW 468 (598)
Q Consensus 389 ~~lKeeGN~lfk~GdY~eAIe~YskALel~P~~~~~~~a~ly~NRA~cylKLgdyeeAI~D~~kALeLdP~~~~~~KAyy 468 (598)
+-+...|..+-+.++.+.|-+.|...++.+|.. ..+|.-++..--+.|+...|...++++.-.+|+ +.-.|.
T Consensus 686 Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~~-----ipLWllLakleEk~~~~~rAR~ildrarlkNPk---~~~lwl 757 (913)
T KOG0495|consen 686 KLWLMLGQIEEQMENIEMAREAYLQGTKKCPNS-----IPLWLLLAKLEEKDGQLVRARSILDRARLKNPK---NALLWL 757 (913)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHhccccCCCC-----chHHHHHHHHHHHhcchhhHHHHHHHHHhcCCC---cchhHH
Confidence 345667777788899999999999999999998 899999999999999999999999999999999 888888
Q ss_pred HHHHHHHHhhcHHHHHHHHHHHHHHhccCC
Q 007571 469 RRAQAYDMLALAKESLLDAILFINECSQSN 498 (598)
Q Consensus 469 RRAqAy~~LGdy~EAl~d~~kALel~~k~~ 498 (598)
-.-+.-+..|+.+.|.....+||+.||++.
T Consensus 758 e~Ir~ElR~gn~~~a~~lmakALQecp~sg 787 (913)
T KOG0495|consen 758 ESIRMELRAGNKEQAELLMAKALQECPSSG 787 (913)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCccc
Confidence 888888999999999999999999999753
No 207
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=94.83 E-value=0.069 Score=54.45 Aligned_cols=73 Identities=12% Similarity=-0.043 Sum_probs=68.9
Q ss_pred hHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCcCHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHhccCC
Q 007571 423 KKERVVLYSNRAQCHLLMQQPLAAISDATRALCLHNPLNRHAKSLWRRAQAYDMLALAKESLLDAILFINECSQSN 498 (598)
Q Consensus 423 ~~~~a~ly~NRA~cylKLgdyeeAI~D~~kALeLdP~~~~~~KAyyRRAqAy~~LGdy~EAl~d~~kALel~~k~~ 498 (598)
+++++.++..||..|-.+|-+.-|..|++++|.+.|+ -+.++..+|.-+..-|+|+.|.+.|...+++.|..+
T Consensus 61 ~eeRA~l~fERGvlYDSlGL~~LAR~DftQaLai~P~---m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~ 133 (297)
T COG4785 61 DEERAQLLFERGVLYDSLGLRALARNDFSQALAIRPD---MPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYN 133 (297)
T ss_pred hHHHHHHHHHhcchhhhhhHHHHHhhhhhhhhhcCCC---cHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcch
Confidence 5678999999999999999999999999999999999 999999999999999999999999999999988644
No 208
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=94.79 E-value=0.13 Score=40.99 Aligned_cols=36 Identities=11% Similarity=-0.067 Sum_probs=30.2
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCcCHHHH
Q 007571 429 LYSNRAQCHLLMQQPLAAISDATRALCLHNPLNRHAKSL 467 (598)
Q Consensus 429 ly~NRA~cylKLgdyeeAI~D~~kALeLdP~~~~~~KAy 467 (598)
+++.+|.+++++|+|.+|...++.+|+++|+ |..|.
T Consensus 3 ~lY~lAig~ykl~~Y~~A~~~~~~lL~~eP~---N~Qa~ 38 (53)
T PF14853_consen 3 CLYYLAIGHYKLGEYEKARRYCDALLEIEPD---NRQAQ 38 (53)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHTTS----HHHH
T ss_pred hHHHHHHHHHHhhhHHHHHHHHHHHHhhCCC---cHHHH
Confidence 5667999999999999999999999999999 76553
No 209
>PRK04841 transcriptional regulator MalT; Provisional
Probab=94.76 E-value=0.35 Score=57.38 Aligned_cols=104 Identities=14% Similarity=-0.007 Sum_probs=52.4
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-chHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC-----CcCH
Q 007571 391 VKLEGNSLFSAGNISGAASKYSEALALCPMR-SKKERVVLYSNRAQCHLLMQQPLAAISDATRALCLHNPL-----NRHA 464 (598)
Q Consensus 391 lKeeGN~lfk~GdY~eAIe~YskALel~P~~-~~~~~a~ly~NRA~cylKLgdyeeAI~D~~kALeLdP~~-----~~~~ 464 (598)
....|..++..|++++|...|.+++...... ........+.++|.+++..|++++|...+.+++.+-... ....
T Consensus 494 ~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~ 573 (903)
T PRK04841 494 TSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHE 573 (903)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHH
Confidence 3445555566666666666666666543321 111123345556666666666666666666655542110 0011
Q ss_pred HHHHHHHHHHHHhhcHHHHHHHHHHHHHHh
Q 007571 465 KSLWRRAQAYDMLALAKESLLDAILFINEC 494 (598)
Q Consensus 465 KAyyRRAqAy~~LGdy~EAl~d~~kALel~ 494 (598)
-.+..+|.++...|++++|...+.+++...
T Consensus 574 ~~~~~la~~~~~~G~~~~A~~~~~~al~~~ 603 (903)
T PRK04841 574 FLLRIRAQLLWEWARLDEAEQCARKGLEVL 603 (903)
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHhHHhh
Confidence 223345555555566666666655555543
No 210
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=94.74 E-value=0.59 Score=48.64 Aligned_cols=74 Identities=22% Similarity=0.164 Sum_probs=65.4
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCcCHHHH
Q 007571 388 ALVVKLEGNSLFSAGNISGAASKYSEALALCPMRSKKERVVLYSNRAQCHLLMQQPLAAISDATRALCLHNPLNRHAKSL 467 (598)
Q Consensus 388 A~~lKeeGN~lfk~GdY~eAIe~YskALel~P~~~~~~~a~ly~NRA~cylKLgdyeeAI~D~~kALeLdP~~~~~~KAy 467 (598)
---+.+...-+.+.|+|-++++.-+..|...|.+ ..+|+.||.++...-+.++|..|+.++|+++|. -..+.
T Consensus 230 tpLllNy~QC~L~~~e~yevleh~seiL~~~~~n-----vKA~frRakAhaa~Wn~~eA~~D~~~vL~ldps---lasvV 301 (329)
T KOG0545|consen 230 TPLLLNYCQCLLKKEEYYEVLEHCSEILRHHPGN-----VKAYFRRAKAHAAVWNEAEAKADLQKVLELDPS---LASVV 301 (329)
T ss_pred hHHHHhHHHHHhhHHHHHHHHHHHHHHHhcCCch-----HHHHHHHHHHHHhhcCHHHHHHHHHHHHhcChh---hHHHH
Confidence 3446677788899999999999999999999999 999999999999999999999999999999998 44444
Q ss_pred HH
Q 007571 468 WR 469 (598)
Q Consensus 468 yR 469 (598)
-|
T Consensus 302 sr 303 (329)
T KOG0545|consen 302 SR 303 (329)
T ss_pred HH
Confidence 33
No 211
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=94.68 E-value=0.057 Score=38.86 Aligned_cols=28 Identities=21% Similarity=0.035 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHh
Q 007571 429 LYSNRAQCHLLMQQPLAAISDATRALCL 456 (598)
Q Consensus 429 ly~NRA~cylKLgdyeeAI~D~~kALeL 456 (598)
+|.|+|.+|.++|+|++|+..|+++|.+
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~l 28 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQALAL 28 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 3567777777777777777777775544
No 212
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=94.58 E-value=0.1 Score=45.13 Aligned_cols=99 Identities=21% Similarity=0.249 Sum_probs=73.1
Q ss_pred ccccccHHHHHHHHHHhhcCCccccccCCccchhhhhhhhhhcccccHHHHHHHHHhcCCchHHHHHhcccchhhHHHHH
Q 007571 47 EFIELGIFECMAALIWKGLKNRRWLSHDQNIYIPYYAAHIIGSYTMNMEEFAESAVHAGVIPPLVELLRGRLTWVEQRVA 126 (598)
Q Consensus 47 ~~~~lg~~~~~~~l~~~~~~~~~~~~~~~~~~~~yy~ah~~gsy~~~~~~~~~~av~~~~~~~l~~~~~~~~~wve~r~~ 126 (598)
+|.+.|++.....++.++ |..+-.+|...+++.+-+..+-....++.|+||+|+++|.-. ..-=++.|
T Consensus 2 ~~~~~~~i~~l~~~l~~~-----------~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~-~~~v~~~a 69 (120)
T cd00020 2 AVIQAGGLPALVSLLSSS-----------DENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSE-DEEVVKAA 69 (120)
T ss_pred hHHHcCChHHHHHHHHcC-----------CHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCC-CHHHHHHH
Confidence 566778877777777543 357788999999999998888888889999999999999975 45557889
Q ss_pred HHHhhccccCCCchhhhhhhHHHHHHHHHHH
Q 007571 127 VRALGHLATYPSTFPTVASHAEILELSIQLA 157 (598)
Q Consensus 127 ~r~l~h~a~~~~~f~~~~~~~~~~~~~~~~~ 157 (598)
+.+|+.|+....+-..+.....+++.-+++-
T Consensus 70 ~~~L~~l~~~~~~~~~~~~~~g~l~~l~~~l 100 (120)
T cd00020 70 LWALRNLAAGPEDNKLIVLEAGGVPKLVNLL 100 (120)
T ss_pred HHHHHHHccCcHHHHHHHHHCCChHHHHHHH
Confidence 9999999987654333332224454444443
No 213
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=94.53 E-value=0.82 Score=47.49 Aligned_cols=72 Identities=15% Similarity=-0.098 Sum_probs=66.3
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCcCHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHhccCC
Q 007571 427 VVLYSNRAQCHLLMQQPLAAISDATRALCLHNPLNRHAKSLWRRAQAYDMLALAKESLLDAILFINECSQSN 498 (598)
Q Consensus 427 a~ly~NRA~cylKLgdyeeAI~D~~kALeLdP~~~~~~KAyyRRAqAy~~LGdy~EAl~d~~kALel~~k~~ 498 (598)
+.-++|-|...+.-|+|++|+..++++....|......++..-.+.|++..++|++|+..+.+++++.|...
T Consensus 34 ~~~LY~~g~~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~ 105 (254)
T COG4105 34 ASELYNEGLTELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHP 105 (254)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCC
Confidence 677888999999999999999999999999988554679999999999999999999999999999999844
No 214
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=94.41 E-value=0.65 Score=46.62 Aligned_cols=102 Identities=14% Similarity=-0.025 Sum_probs=80.7
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCcCHHHH
Q 007571 388 ALVVKLEGNSLFSAGNISGAASKYSEALALCPMRSKKERVVLYSNRAQCHLLMQQPLAAISDATRALCLHNPLNRHAKSL 467 (598)
Q Consensus 388 A~~lKeeGN~lfk~GdY~eAIe~YskALel~P~~~~~~~a~ly~NRA~cylKLgdyeeAI~D~~kALeLdP~~~~~~KAy 467 (598)
.....+.+..++..+++++|+...+.++....+ ..+...+-.++|.+.+.+|++++|+...+..-.-+- ....-
T Consensus 89 ~laaL~lAk~~ve~~~~d~A~aqL~~~l~~t~D--e~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~~~w----~~~~~ 162 (207)
T COG2976 89 VLAALELAKAEVEANNLDKAEAQLKQALAQTKD--ENLKALAALRLARVQLQQKKADAALKTLDTIKEESW----AAIVA 162 (207)
T ss_pred HHHHHHHHHHHHhhccHHHHHHHHHHHHccchh--HHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccccH----HHHHH
Confidence 445667788899999999999999999975443 356688888999999999999999987665422211 11224
Q ss_pred HHHHHHHHHhhcHHHHHHHHHHHHHHhc
Q 007571 468 WRRAQAYDMLALAKESLLDAILFINECS 495 (598)
Q Consensus 468 yRRAqAy~~LGdy~EAl~d~~kALel~~ 495 (598)
-.||-++..+|+-++|+..|.++++..+
T Consensus 163 elrGDill~kg~k~~Ar~ay~kAl~~~~ 190 (207)
T COG2976 163 ELRGDILLAKGDKQEARAAYEKALESDA 190 (207)
T ss_pred HHhhhHHHHcCchHHHHHHHHHHHHccC
Confidence 5689999999999999999999999863
No 215
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.40 E-value=0.21 Score=52.23 Aligned_cols=68 Identities=18% Similarity=0.088 Sum_probs=63.8
Q ss_pred HHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCcCHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHhcc
Q 007571 426 RVVLYSNRAQCHLLMQQPLAAISDATRALCLHNPLNRHAKSLWRRAQAYDMLALAKESLLDAILFINECSQ 496 (598)
Q Consensus 426 ~a~ly~NRA~cylKLgdyeeAI~D~~kALeLdP~~~~~~KAyyRRAqAy~~LGdy~EAl~d~~kALel~~k 496 (598)
....+.|.+..|+-.++|.+|...+++.+..||. ++.+-..+|.|++.+|+..+|++.+..+++..|.
T Consensus 251 ~~~V~~n~a~i~lg~nn~a~a~r~~~~i~~~D~~---~~~a~NnKALcllYlg~l~DAiK~~e~~~~~~P~ 318 (366)
T KOG2796|consen 251 KIMVLMNSAFLHLGQNNFAEAHRFFTEILRMDPR---NAVANNNKALCLLYLGKLKDALKQLEAMVQQDPR 318 (366)
T ss_pred hHHHHhhhhhheecccchHHHHHHHhhccccCCC---chhhhchHHHHHHHHHHHHHHHHHHHHHhccCCc
Confidence 3677889999999999999999999999999999 9999999999999999999999999999999886
No 216
>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function.
Probab=94.39 E-value=0.29 Score=44.76 Aligned_cols=95 Identities=16% Similarity=0.127 Sum_probs=69.5
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHHHcCC-----------hHHHHHHHHHHHHhCCCCCc
Q 007571 394 EGNSLFSAGNISGAASKYSEALALCPMRSKKERVVLYSNRAQCHLLMQQ-----------PLAAISDATRALCLHNPLNR 462 (598)
Q Consensus 394 eGN~lfk~GdY~eAIe~YskALel~P~~~~~~~a~ly~NRA~cylKLgd-----------yeeAI~D~~kALeLdP~~~~ 462 (598)
.+..+|.+||+-+|++.-...+...+.... ...++.--|.++.++.. .-.+++.+.++..+.|.
T Consensus 2 ~A~~~~~rGnhiKAL~iied~i~~h~~~~~--~~~lh~~QG~if~~lA~~ten~d~k~~yLl~sve~~s~a~~Lsp~--- 76 (111)
T PF04781_consen 2 KAKDYFARGNHIKALEIIEDLISRHGEDES--SWLLHRLQGTIFYKLAKKTENPDVKFRYLLGSVECFSRAVELSPD--- 76 (111)
T ss_pred hHHHHHHccCHHHHHHHHHHHHHHccCCCc--hHHHHHHHhHHHHHHHHhccCchHHHHHHHHhHHHHHHHhccChh---
Confidence 467799999999999999999998887621 12555555666654432 46789999999999999
Q ss_pred CHHHHHHHHHHHHHhhcHHHHHHHHHHHHHH
Q 007571 463 HAKSLWRRAQAYDMLALAKESLLDAILFINE 493 (598)
Q Consensus 463 ~~KAyyRRAqAy~~LGdy~EAl~d~~kALel 493 (598)
.+..+|.+|+=+-....|++++.-.+++|..
T Consensus 77 ~A~~L~~la~~l~s~~~Ykk~v~kak~~Lsv 107 (111)
T PF04781_consen 77 SAHSLFELASQLGSVKYYKKAVKKAKRGLSV 107 (111)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHHhcc
Confidence 7777777776666666666666666666654
No 217
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=94.37 E-value=0.18 Score=57.49 Aligned_cols=307 Identities=17% Similarity=0.133 Sum_probs=179.7
Q ss_pred HHHHhhHHHHHHH-----------------hhhhcccccchhhhhhhh-------ccCCCcccccccHHHHHhhhh----
Q 007571 154 IQLAMSSLEIVYS-----------------HFYQYFDRRLSYHCDLLT-------RGMGGVEMESRKAEEWASQLQ---- 205 (598)
Q Consensus 154 ~~~~~~~~~~~~~-----------------~~~~~~~~~~~y~~~l~~-------~~~~~~~~~~~~ae~w~~ql~---- 205 (598)
..-+.+|+...|. +|-...+.|+.-|..|+. |-+-|+.-+-||+.+= |+.
T Consensus 323 ~~~~ISC~~~L~~kleKq~~~l~~~~nE~keFqk~~~h~~~~~e~l~~~~l~~eAR~l~~~~h~t~~~~~a--q~gnhq~ 400 (886)
T KOG4507|consen 323 RKHAISCQQKLEQKLEKQHRSLQRTLNELKEFQKQHDHYLRQQEILEKHKLIQEARILRNIIHETQMAKEA--QLGNHQI 400 (886)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHhccccccchhHHH--Hhcchhh
Confidence 3456788887774 455566688888888873 5666777777888763 333
Q ss_pred hhHHHh---hhhccccCCccccc-cchHHhhhccccccccCCCCCccchhHHHHHhhccCCCCcccCChHHHHHHHhhhh
Q 007571 206 CWSLQL---INCFAFKPEFLPAI-CKPEFLAKLPGMWGGLVNENSPAGIGLLRTICHHKLGRGPVASCPGLIEALCNIAR 281 (598)
Q Consensus 206 c~s~~~---~~~~a~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~gr~~~~~~~~~i~~lc~isr 281 (598)
||---- +.|- -|+++... | +|+.+.+- +|+++-.-+- .-+ --+++-.++-.|+|
T Consensus 401 c~~~T~~~Sl~ct--~~~~~~~~r~--d~~~n~~~-----i~E~~~~~~~------------~~~-~nRd~~~n~~dI~R 458 (886)
T KOG4507|consen 401 CRLVTQQHSLHCT--WDQPVRYHRG--DIFENVDY-----VQEGESSTSS------------MMS-VNRDVQSNQSDINR 458 (886)
T ss_pred hhhccCccCcccc--cccccchhhh--hhhhccHH-----Hhcccccccc------------ccc-hhhHhhhhHHHHHh
Confidence 664322 2333 13333332 3 23333321 2222211100 000 02577788899999
Q ss_pred ccchhhhhhhhhhhhhhc-CCcc-hhHHhhhhhhhhhhhHhh----------hcc-cccCCccceehhhccccccccCCC
Q 007571 282 SSDDWQYMAIDCLLWLLQ-DPST-CHKVIDKAVPTLIDLAEI----------TNL-GDHKKLGDSIVNVLQDCIQLQGTV 348 (598)
Q Consensus 282 ssdd~q~maidcll~l~~-D~~t-~~kvld~a~~~lvDl~eL----------~~L-g~~~k~GE~~~~~L~pdy~~g~~g 348 (598)
++-- ..-.-.+++-++ |++. |.+. -.+-|..+|-.+. +.. -.-.+.|=.+...+..+|+.....
T Consensus 459 ~v~~--~~~~~~il~~~~~d~~~~r~~q-~~~wp~~adc~~~~~~~p~~~~~p~~f~~pen~g~~i~el~s~~~~~~~~~ 535 (886)
T KOG4507|consen 459 SVKS--SPVAHSILWIWGRDSDAYRDKQ-HILWPKRADCTESYPRVPVGGELPTYFLPPENKGLRIHELSSDDYSTEEEA 535 (886)
T ss_pred hhhh--hhHHHhhHHHhccchhhhHHhh-cccCCccccccccccCCccccccCceecCcccCceeeeeeccccccccccc
Confidence 8643 334445666666 5444 3322 1233444443331 111 111233444444444445443322
Q ss_pred C-------CCCCccHHHHHHHHHHHhHhhHHhhc------------------CChHHHHHHHHHHHH---------HHHH
Q 007571 349 R-------SSPSNRSKEQIEELLNSRQRLKWEKN------------------MLKEDLHIKQAAALV---------VKLE 394 (598)
Q Consensus 349 ~-------~ip~~~tl~~~~ELl~~kek~k~e~~------------------ms~eElee~~~~A~~---------lKee 394 (598)
. ...-..+..+++.++..+- ..... +..+|+..++..+.. +...
T Consensus 536 ~~p~c~~~d~r~~~~~~~~~~~l~~r~--d~k~~~~~~~~~k~~~~r~~~~~i~e~e~~~~~~~~~~~~~~p~w~~ln~a 613 (886)
T KOG4507|consen 536 QTPDCSITDFRKSHTLSYLVKELEVRM--DLKAKMPDDHARKILLSRINNYTIPEEEIGSFLFHAINKPNAPIWLILNEA 613 (886)
T ss_pred cCCCCceeehhhhccHHHHHHHhhhcc--cccccCchHHHHHHHHHHHhcccCcHHHHHHHHHHHhcCCCCCeEEEeecc
Confidence 1 1222345667777666431 11111 122222222222211 1222
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCcCHHHHHHHHHHH
Q 007571 395 GNSLFSAGNISGAASKYSEALALCPMRSKKERVVLYSNRAQCHLLMQQPLAAISDATRALCLHNPLNRHAKSLWRRAQAY 474 (598)
Q Consensus 395 GN~lfk~GdY~eAIe~YskALel~P~~~~~~~a~ly~NRA~cylKLgdyeeAI~D~~kALeLdP~~~~~~KAyyRRAqAy 474 (598)
|.-.--.|+-..|+.+...|+...|.. .-+-..|+|+..++-+-..+|-....++|.++.. .+-.+|-.|.+|
T Consensus 614 glywr~~gn~~~a~~cl~~a~~~~p~~----~~v~~v~la~~~~~~~~~~da~~~l~q~l~~~~s---epl~~~~~g~~~ 686 (886)
T KOG4507|consen 614 GLYWRAVGNSTFAIACLQRALNLAPLQ----QDVPLVNLANLLIHYGLHLDATKLLLQALAINSS---EPLTFLSLGNAY 686 (886)
T ss_pred cceeeecCCcHHHHHHHHHHhccChhh----hcccHHHHHHHHHHhhhhccHHHHHHHHHhhccc---CchHHHhcchhH
Confidence 222234788999999999999988864 3466789999999999999999999999999977 788899999999
Q ss_pred HHhhcHHHHHHHHHHHHHHhcc
Q 007571 475 DMLALAKESLLDAILFINECSQ 496 (598)
Q Consensus 475 ~~LGdy~EAl~d~~kALel~~k 496 (598)
+.+.+.+.|++.|+.|+++.++
T Consensus 687 l~l~~i~~a~~~~~~a~~~~~~ 708 (886)
T KOG4507|consen 687 LALKNISGALEAFRQALKLTTK 708 (886)
T ss_pred HHHhhhHHHHHHHHHHHhcCCC
Confidence 9999999999999999999876
No 218
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=94.36 E-value=0.41 Score=44.05 Aligned_cols=63 Identities=19% Similarity=0.094 Sum_probs=54.0
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 007571 387 AALVVKLEGNSLFSAGNISGAASKYSEALALCPMRSKKERVVLYSNRAQCHLLMQQPLAAISDATRAL 454 (598)
Q Consensus 387 ~A~~lKeeGN~lfk~GdY~eAIe~YskALel~P~~~~~~~a~ly~NRA~cylKLgdyeeAI~D~~kAL 454 (598)
....+...+..+...|+|++|+..+.+++..+|.+ -.+|..+-.+|..+|++.+|+..|.+..
T Consensus 61 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~l~~dP~~-----E~~~~~lm~~~~~~g~~~~A~~~Y~~~~ 123 (146)
T PF03704_consen 61 YLDALERLAEALLEAGDYEEALRLLQRALALDPYD-----EEAYRLLMRALAAQGRRAEALRVYERYR 123 (146)
T ss_dssp HHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT------HHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCC-----HHHHHHHHHHHHHCcCHHHHHHHHHHHH
Confidence 45567777888899999999999999999999998 8899999999999999999999998774
No 219
>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless. Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B ....
Probab=94.21 E-value=0.056 Score=39.87 Aligned_cols=39 Identities=46% Similarity=0.536 Sum_probs=31.6
Q ss_pred HHHHHHHhcCCchHHHHHhcccchhhHHHHHHHHhhcccc
Q 007571 96 EFAESAVHAGVIPPLVELLRGRLTWVEQRVAVRALGHLAT 135 (598)
Q Consensus 96 ~~~~~av~~~~~~~l~~~~~~~~~wve~r~~~r~l~h~a~ 135 (598)
+....-+++|+||+|+.||+ --.=.=|+.|+.||++|+.
T Consensus 3 ~~~~~i~~~g~i~~Lv~ll~-~~~~~v~~~a~~al~nl~~ 41 (41)
T PF00514_consen 3 ENKQAIVEAGGIPPLVQLLK-SPDPEVQEEAAWALGNLAA 41 (41)
T ss_dssp HHHHHHHHTTHHHHHHHHTT-SSSHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHcccHHHHHHHHc-CCCHHHHHHHHHHHHHHhC
Confidence 44556789999999999999 4455558999999999874
No 220
>KOG0544 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=94.20 E-value=0.0029 Score=55.95 Aligned_cols=39 Identities=15% Similarity=0.085 Sum_probs=35.9
Q ss_pred cCCccceehhhccccccccCCCC--CCCCccHHHHHHHHHH
Q 007571 327 HKKLGDSIVNVLQDCIQLQGTVR--SSPSNRSKEQIEELLN 365 (598)
Q Consensus 327 ~~k~GE~~~~~L~pdy~~g~~g~--~ip~~~tl~~~~ELl~ 365 (598)
.|.+||++.+++.|+|+||..|. .||||+++.|.+|++.
T Consensus 66 qmsvGekakLti~pd~aYG~~G~p~~IppNatL~FdVEll~ 106 (108)
T KOG0544|consen 66 QMSVGEKAKLTISPDYAYGPRGHPGGIPPNATLVFDVELLK 106 (108)
T ss_pred hccccccceeeeccccccCCCCCCCccCCCcEEEEEEEEEe
Confidence 48999999999999999999998 8999999999888765
No 221
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=94.13 E-value=0.19 Score=52.85 Aligned_cols=93 Identities=10% Similarity=-0.125 Sum_probs=71.4
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHHH--cC--ChHHHHHHHHHHHHhCCCCCcCHHHHHH
Q 007571 394 EGNSLFSAGNISGAASKYSEALALCPMRSKKERVVLYSNRAQCHLL--MQ--QPLAAISDATRALCLHNPLNRHAKSLWR 469 (598)
Q Consensus 394 eGN~lfk~GdY~eAIe~YskALel~P~~~~~~~a~ly~NRA~cylK--Lg--dyeeAI~D~~kALeLdP~~~~~~KAyyR 469 (598)
.-..+.+.++++.|.+.+..+-+.+++. +..++|.++.. .| ++.+|...|+...+..|. .++.+..
T Consensus 137 ~Vqi~L~~~R~dlA~k~l~~~~~~~eD~-------~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~~~~---t~~~lng 206 (290)
T PF04733_consen 137 AVQILLKMNRPDLAEKELKNMQQIDEDS-------ILTQLAEAWVNLATGGEKYQDAFYIFEELSDKFGS---TPKLLNG 206 (290)
T ss_dssp HHHHHHHTT-HHHHHHHHHHHHCCSCCH-------HHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCCS-----SHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCcH-------HHHHHHHHHHHHHhCchhHHHHHHHHHHHHhccCC---CHHHHHH
Confidence 3346789999999999999988776653 34556654443 44 699999999997777677 8999999
Q ss_pred HHHHHHHhhcHHHHHHHHHHHHHHhcc
Q 007571 470 RAQAYDMLALAKESLLDAILFINECSQ 496 (598)
Q Consensus 470 RAqAy~~LGdy~EAl~d~~kALel~~k 496 (598)
.|.+++.+|+|++|...+..+++..++
T Consensus 207 ~A~~~l~~~~~~eAe~~L~~al~~~~~ 233 (290)
T PF04733_consen 207 LAVCHLQLGHYEEAEELLEEALEKDPN 233 (290)
T ss_dssp HHHHHHHCT-HHHHHHHHHHHCCC-CC
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHhccC
Confidence 999999999999999999999876654
No 222
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=94.02 E-value=0.067 Score=59.42 Aligned_cols=79 Identities=14% Similarity=0.144 Sum_probs=68.1
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCcCHHHH
Q 007571 388 ALVVKLEGNSLFSAGNISGAASKYSEALALCPMRSKKERVVLYSNRAQCHLLMQQPLAAISDATRALCLHNPLNRHAKSL 467 (598)
Q Consensus 388 A~~lKeeGN~lfk~GdY~eAIe~YskALel~P~~~~~~~a~ly~NRA~cylKLgdyeeAI~D~~kALeLdP~~~~~~KAy 467 (598)
|.-+-+++.++++.++|..|+....+||+++|.. ..+|.-||.+.+++++|.+|+.++.++..+.|+ .+++.
T Consensus 38 a~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~~-----~K~Y~rrg~a~m~l~~~~~A~~~l~~~~~l~Pn---d~~~~ 109 (476)
T KOG0376|consen 38 AIYFANRALAHLKVESFGGALHDALKAIELDPTY-----IKAYVRRGTAVMALGEFKKALLDLEKVKKLAPN---DPDAT 109 (476)
T ss_pred eeeechhhhhheeechhhhHHHHHHhhhhcCchh-----hheeeeccHHHHhHHHHHHHHHHHHHhhhcCcC---cHHHH
Confidence 4445566778899999999999999999999998 999999999999999999999999999999999 66654
Q ss_pred HHHHHHH
Q 007571 468 WRRAQAY 474 (598)
Q Consensus 468 yRRAqAy 474 (598)
.-...|-
T Consensus 110 r~~~Ec~ 116 (476)
T KOG0376|consen 110 RKIDECN 116 (476)
T ss_pred HHHHHHH
Confidence 4444443
No 223
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=93.90 E-value=1.6 Score=46.40 Aligned_cols=99 Identities=16% Similarity=0.115 Sum_probs=82.0
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHHHcCChHHHHHHHHH-----------------
Q 007571 390 VVKLEGNSLFSAGNISGAASKYSEALALCPMRSKKERVVLYSNRAQCHLLMQQPLAAISDATR----------------- 452 (598)
Q Consensus 390 ~lKeeGN~lfk~GdY~eAIe~YskALel~P~~~~~~~a~ly~NRA~cylKLgdyeeAI~D~~k----------------- 452 (598)
....+|......|++.+|...+..++...|.+ ..+..-+|.||+..|+.+.|...+..
T Consensus 136 ~~~~~~~~~~~~e~~~~a~~~~~~al~~~~~~-----~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i 210 (304)
T COG3118 136 EALAEAKELIEAEDFGEAAPLLKQALQAAPEN-----SEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQI 210 (304)
T ss_pred HHHHHhhhhhhccchhhHHHHHHHHHHhCccc-----chHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHH
Confidence 35567778899999999999999999999998 78888899999999998665543331
Q ss_pred -----------------HHHhCCCCCcCHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHhcc
Q 007571 453 -----------------ALCLHNPLNRHAKSLWRRAQAYDMLALAKESLLDAILFINECSQ 496 (598)
Q Consensus 453 -----------------ALeLdP~~~~~~KAyyRRAqAy~~LGdy~EAl~d~~kALel~~k 496 (598)
.+.-||+ +..+-+.+|..|...|++++|+..+...++....
T Consensus 211 ~ll~qaa~~~~~~~l~~~~aadPd---d~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~ 268 (304)
T COG3118 211 ELLEQAAATPEIQDLQRRLAADPD---DVEAALALADQLHLVGRNEAALEHLLALLRRDRG 268 (304)
T ss_pred HHHHHHhcCCCHHHHHHHHHhCCC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccc
Confidence 2233788 8999999999999999999999988888877554
No 224
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=93.90 E-value=0.47 Score=41.01 Aligned_cols=68 Identities=19% Similarity=0.165 Sum_probs=58.4
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHh
Q 007571 387 AALVVKLEGNSLFSAGNISGAASKYSEALALCPMRSKKERVVLYSNRAQCHLLMQQPLAAISDATRALCL 456 (598)
Q Consensus 387 ~A~~lKeeGN~lfk~GdY~eAIe~YskALel~P~~~~~~~a~ly~NRA~cylKLgdyeeAI~D~~kALeL 456 (598)
.+....++|-.+|.+.+.++|+..+++|++..++. ..+..++.-++.+|...|+|.+.+...-+=+++
T Consensus 5 ~ak~~ie~GlkLY~~~~~~~Al~~W~~aL~k~~~~--~~rf~~lG~l~qA~~e~Gkyr~~L~fA~~Q~~~ 72 (80)
T PF10579_consen 5 QAKQQIEKGLKLYHQNETQQALQKWRKALEKITDR--EDRFRVLGYLIQAHMEWGKYREMLAFALQQLEI 72 (80)
T ss_pred HHHHHHHHHHHHhccchHHHHHHHHHHHHhhcCCh--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46778899999999999999999999999998875 456777777889999999999999887766654
No 225
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=93.90 E-value=0.11 Score=35.46 Aligned_cols=31 Identities=16% Similarity=0.010 Sum_probs=27.1
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHhCCC
Q 007571 429 LYSNRAQCHLLMQQPLAAISDATRALCLHNP 459 (598)
Q Consensus 429 ly~NRA~cylKLgdyeeAI~D~~kALeLdP~ 459 (598)
++.++|.||.++|++++|+..++++++..|+
T Consensus 2 a~~~~a~~~~~~g~~~~A~~~~~~~~~~~P~ 32 (33)
T PF13174_consen 2 ALYRLARCYYKLGDYDEAIEYFQRLIKRYPD 32 (33)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHCcC
Confidence 5778899999999999999999999988886
No 226
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.66 E-value=0.3 Score=51.91 Aligned_cols=83 Identities=17% Similarity=0.050 Sum_probs=71.4
Q ss_pred HHHcCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCcCHHHHHHHHHHHHHh
Q 007571 398 LFSAGNISGAASKYSEALALCPMRSKKERVVLYSNRAQCHLLMQQPLAAISDATRALCLHNPLNRHAKSLWRRAQAYDML 477 (598)
Q Consensus 398 lfk~GdY~eAIe~YskALel~P~~~~~~~a~ly~NRA~cylKLgdyeeAI~D~~kALeLdP~~~~~~KAyyRRAqAy~~L 477 (598)
+.+..+|..||++.+.-.+..|.. -..++-+|.||+...+|..|...|++.-.+.|. ..+--+.-|+.++..
T Consensus 20 lI~d~ry~DaI~~l~s~~Er~p~~-----rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~---~~qYrlY~AQSLY~A 91 (459)
T KOG4340|consen 20 LIRDARYADAIQLLGSELERSPRS-----RAGLSLLGYCYYRLQEFALAAECYEQLGQLHPE---LEQYRLYQAQSLYKA 91 (459)
T ss_pred HHHHhhHHHHHHHHHHHHhcCccc-----hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChH---HHHHHHHHHHHHHHh
Confidence 457778999999999888888977 677888999999999999999999999999998 777777779999999
Q ss_pred hcHHHHHHHHH
Q 007571 478 ALAKESLLDAI 488 (598)
Q Consensus 478 Gdy~EAl~d~~ 488 (598)
+.|.+|+....
T Consensus 92 ~i~ADALrV~~ 102 (459)
T KOG4340|consen 92 CIYADALRVAF 102 (459)
T ss_pred cccHHHHHHHH
Confidence 99999876543
No 227
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=93.55 E-value=0.65 Score=50.76 Aligned_cols=88 Identities=19% Similarity=0.014 Sum_probs=73.7
Q ss_pred HcCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCcCHHHHHHHHHHHHHhhc
Q 007571 400 SAGNISGAASKYSEALALCPMRSKKERVVLYSNRAQCHLLMQQPLAAISDATRALCLHNPLNRHAKSLWRRAQAYDMLAL 479 (598)
Q Consensus 400 k~GdY~eAIe~YskALel~P~~~~~~~a~ly~NRA~cylKLgdyeeAI~D~~kALeLdP~~~~~~KAyyRRAqAy~~LGd 479 (598)
+-+++..=++.-.+.++..|++ +.+++-+|..+++.+.|.+|-..++.||...|. ...|.-+|.++..+|+
T Consensus 306 ~~~d~~~l~k~~e~~l~~h~~~-----p~L~~tLG~L~~k~~~w~kA~~~leaAl~~~~s----~~~~~~la~~~~~~g~ 376 (400)
T COG3071 306 RPGDPEPLIKAAEKWLKQHPED-----PLLLSTLGRLALKNKLWGKASEALEAALKLRPS----ASDYAELADALDQLGE 376 (400)
T ss_pred CCCCchHHHHHHHHHHHhCCCC-----hhHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCC----hhhHHHHHHHHHHcCC
Confidence 4566666677777777777777 789999999999999999999999999999886 5677788999999999
Q ss_pred HHHHHHHHHHHHHHhcc
Q 007571 480 AKESLLDAILFINECSQ 496 (598)
Q Consensus 480 y~EAl~d~~kALel~~k 496 (598)
..+|-..++.++-..-.
T Consensus 377 ~~~A~~~r~e~L~~~~~ 393 (400)
T COG3071 377 PEEAEQVRREALLLTRQ 393 (400)
T ss_pred hHHHHHHHHHHHHHhcC
Confidence 99999999999865543
No 228
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.32 E-value=0.19 Score=52.62 Aligned_cols=81 Identities=17% Similarity=0.198 Sum_probs=68.9
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCcCHHH
Q 007571 387 AALVVKLEGNSLFSAGNISGAASKYSEALALCPMRSKKERVVLYSNRAQCHLLMQQPLAAISDATRALCLHNPLNRHAKS 466 (598)
Q Consensus 387 ~A~~lKeeGN~lfk~GdY~eAIe~YskALel~P~~~~~~~a~ly~NRA~cylKLgdyeeAI~D~~kALeLdP~~~~~~KA 466 (598)
.....++.+-.+.-+++|..|...|++.+..+|.+ +.+-+|.|.|.+-+|+..+|++..+.+++..|.+.++-..
T Consensus 251 ~~~V~~n~a~i~lg~nn~a~a~r~~~~i~~~D~~~-----~~a~NnKALcllYlg~l~DAiK~~e~~~~~~P~~~l~es~ 325 (366)
T KOG2796|consen 251 KIMVLMNSAFLHLGQNNFAEAHRFFTEILRMDPRN-----AVANNNKALCLLYLGKLKDALKQLEAMVQQDPRHYLHESV 325 (366)
T ss_pred hHHHHhhhhhheecccchHHHHHHHhhccccCCCc-----hhhhchHHHHHHHHHHHHHHHHHHHHHhccCCccchhhhH
Confidence 34456777777888999999999999999999999 9999999999999999999999999999999995444444
Q ss_pred HHHHHH
Q 007571 467 LWRRAQ 472 (598)
Q Consensus 467 yyRRAq 472 (598)
.+++-.
T Consensus 326 ~~nL~t 331 (366)
T KOG2796|consen 326 LFNLTT 331 (366)
T ss_pred HHHHHH
Confidence 555443
No 229
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=93.24 E-value=0.17 Score=36.35 Aligned_cols=28 Identities=29% Similarity=0.342 Sum_probs=23.7
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 007571 391 VKLEGNSLFSAGNISGAASKYSEALALC 418 (598)
Q Consensus 391 lKeeGN~lfk~GdY~eAIe~YskALel~ 418 (598)
+...|+.+.+.|+|++|++.|.++|.+.
T Consensus 2 l~~Lg~~~~~~g~~~~Ai~~y~~aL~l~ 29 (36)
T PF13176_consen 2 LNNLGRIYRQQGDYEKAIEYYEQALALA 29 (36)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence 6788999999999999999999976553
No 230
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=93.18 E-value=0.14 Score=32.54 Aligned_cols=31 Identities=19% Similarity=0.058 Sum_probs=28.4
Q ss_pred HHHHHHHHHHHHhhcHHHHHHHHHHHHHHhc
Q 007571 465 KSLWRRAQAYDMLALAKESLLDAILFINECS 495 (598)
Q Consensus 465 KAyyRRAqAy~~LGdy~EAl~d~~kALel~~ 495 (598)
.+++++|.++..+|++++|+..|.++++..+
T Consensus 2 ~~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~ 32 (34)
T smart00028 2 EALYNLGNAYLKLGDYDEALEYYEKALELDP 32 (34)
T ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHHHccCC
Confidence 5789999999999999999999999998755
No 231
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=93.11 E-value=0.48 Score=55.14 Aligned_cols=95 Identities=9% Similarity=-0.038 Sum_probs=77.0
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCcCHHHHHHH
Q 007571 391 VKLEGNSLFSAGNISGAASKYSEALALCPMRSKKERVVLYSNRAQCHLLMQQPLAAISDATRALCLHNPLNRHAKSLWRR 470 (598)
Q Consensus 391 lKeeGN~lfk~GdY~eAIe~YskALel~P~~~~~~~a~ly~NRA~cylKLgdyeeAI~D~~kALeLdP~~~~~~KAyyRR 470 (598)
+.-....+.+.|++++|.+.+.+. ...|+ ...|..+..++.+.|+++.|...+++.++++|+ +...|.-+
T Consensus 465 y~~li~~l~r~G~~~eA~~~~~~~-~~~p~------~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~~p~---~~~~y~~L 534 (697)
T PLN03081 465 YACMIELLGREGLLDEAYAMIRRA-PFKPT------VNMWAALLTACRIHKNLELGRLAAEKLYGMGPE---KLNNYVVL 534 (697)
T ss_pred hHhHHHHHHhcCCHHHHHHHHHHC-CCCCC------HHHHHHHHHHHHHcCCcHHHHHHHHHHhCCCCC---CCcchHHH
Confidence 444556677888888888887654 23343 566888888889999999999999999999998 88889999
Q ss_pred HHHHHHhhcHHHHHHHHHHHHHHhc
Q 007571 471 AQAYDMLALAKESLLDAILFINECS 495 (598)
Q Consensus 471 AqAy~~LGdy~EAl~d~~kALel~~ 495 (598)
+.+|...|++++|.+.++...+.-.
T Consensus 535 ~~~y~~~G~~~~A~~v~~~m~~~g~ 559 (697)
T PLN03081 535 LNLYNSSGRQAEAAKVVETLKRKGL 559 (697)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHcCC
Confidence 9999999999999998888776543
No 232
>COG2912 Uncharacterized conserved protein [Function unknown]
Probab=93.09 E-value=0.73 Score=48.25 Aligned_cols=77 Identities=21% Similarity=0.175 Sum_probs=69.5
Q ss_pred CCCchHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCcCHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHhccCC
Q 007571 419 PMRSKKERVVLYSNRAQCHLLMQQPLAAISDATRALCLHNPLNRHAKSLWRRAQAYDMLALAKESLLDAILFINECSQSN 498 (598)
Q Consensus 419 P~~~~~~~a~ly~NRA~cylKLgdyeeAI~D~~kALeLdP~~~~~~KAyyRRAqAy~~LGdy~EAl~d~~kALel~~k~~ 498 (598)
+.........+..|.=..|+..++++.|.....+.+.++|. .+.-.--||.+|.++|.+.-|+.|+..+++.+|++.
T Consensus 173 ~a~~~~il~rll~~lk~~~~~e~~~~~al~~~~r~l~l~P~---dp~eirDrGliY~ql~c~~vAl~dl~~~~~~~P~~~ 249 (269)
T COG2912 173 QASNREILSRLLRNLKAALLRELQWELALRVAERLLDLNPE---DPYEIRDRGLIYAQLGCYHVALEDLSYFVEHCPDDP 249 (269)
T ss_pred hccHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHhhCCC---ChhhccCcHHHHHhcCCchhhHHHHHHHHHhCCCch
Confidence 33345667888899999999999999999999999999999 888899999999999999999999999999999744
No 233
>PLN03218 maturation of RBCL 1; Provisional
Probab=93.08 E-value=2 Score=52.97 Aligned_cols=88 Identities=18% Similarity=-0.082 Sum_probs=41.9
Q ss_pred HHHHHcCCHHHHHHHHHHHHHh--CCCCchHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCcCHHHHHHHHHH
Q 007571 396 NSLFSAGNISGAASKYSEALAL--CPMRSKKERVVLYSNRAQCHLLMQQPLAAISDATRALCLHNPLNRHAKSLWRRAQA 473 (598)
Q Consensus 396 N~lfk~GdY~eAIe~YskALel--~P~~~~~~~a~ly~NRA~cylKLgdyeeAI~D~~kALeLdP~~~~~~KAyyRRAqA 473 (598)
+.+.+.|++++|+..|.+..+. .|+ ...|+.+..+|.+.|++++|++.+.++++....+ +...|.-+..+
T Consensus 622 ~ay~k~G~~deAl~lf~eM~~~Gv~PD------~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~p--d~~tynsLI~a 693 (1060)
T PLN03218 622 NSCSQKGDWDFALSIYDDMKKKGVKPD------EVFFSALVDVAGHAGDLDKAFEILQDARKQGIKL--GTVSYSSLMGA 693 (1060)
T ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCCC------HHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCC--CHHHHHHHHHH
Confidence 3444444445555444444433 222 3444445555555555555555555554433221 34455555555
Q ss_pred HHHhhcHHHHHHHHHHHH
Q 007571 474 YDMLALAKESLLDAILFI 491 (598)
Q Consensus 474 y~~LGdy~EAl~d~~kAL 491 (598)
|...|++++|...|.+..
T Consensus 694 y~k~G~~eeA~~lf~eM~ 711 (1060)
T PLN03218 694 CSNAKNWKKALELYEDIK 711 (1060)
T ss_pred HHhCCCHHHHHHHHHHHH
Confidence 555555555555554443
No 234
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=92.96 E-value=0.27 Score=53.42 Aligned_cols=109 Identities=16% Similarity=0.072 Sum_probs=86.3
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCc-hHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCC---c---
Q 007571 390 VVKLEGNSLFSAGNISGAASKYSEALALCPMRS-KKERVVLYSNRAQCHLLMQQPLAAISDATRALCLHNPLN---R--- 462 (598)
Q Consensus 390 ~lKeeGN~lfk~GdY~eAIe~YskALel~P~~~-~~~~a~ly~NRA~cylKLgdyeeAI~D~~kALeLdP~~~---~--- 462 (598)
...-.||++...+.|+++++.|++|+++..... .-+...++.-++..|-.++++++|+-...+|.++-.... .
T Consensus 124 ~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~k 203 (518)
T KOG1941|consen 124 VSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLK 203 (518)
T ss_pred hhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHH
Confidence 344588999999999999999999999864431 122356677889999999999999999999988754310 0
Q ss_pred -CHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHhccCC
Q 007571 463 -HAKSLWRRAQAYDMLALAKESLLDAILFINECSQSN 498 (598)
Q Consensus 463 -~~KAyyRRAqAy~~LGdy~EAl~d~~kALel~~k~~ 498 (598)
..-++|+++.+|..+|..-.|.+.++++.++.....
T Consensus 204 yr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~G 240 (518)
T KOG1941|consen 204 YRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHG 240 (518)
T ss_pred HHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhC
Confidence 235788999999999999999999999998877543
No 235
>PLN03218 maturation of RBCL 1; Provisional
Probab=92.96 E-value=2.2 Score=52.67 Aligned_cols=98 Identities=10% Similarity=-0.103 Sum_probs=80.3
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCchHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCcCHHHH
Q 007571 389 LVVKLEGNSLFSAGNISGAASKYSEALALC-PMRSKKERVVLYSNRAQCHLLMQQPLAAISDATRALCLHNPLNRHAKSL 467 (598)
Q Consensus 389 ~~lKeeGN~lfk~GdY~eAIe~YskALel~-P~~~~~~~a~ly~NRA~cylKLgdyeeAI~D~~kALeLdP~~~~~~KAy 467 (598)
..+......+.+.|++++|.+.+.+.++.. +.+ ...|+.+..+|.+.|++++|+..+.+..+....+ +...|
T Consensus 650 ~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd-----~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~P--dvvty 722 (1060)
T PLN03218 650 VFFSALVDVAGHAGDLDKAFEILQDARKQGIKLG-----TVSYSSLMGACSNAKNWKKALELYEDIKSIKLRP--TVSTM 722 (1060)
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCC-----HHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCC--CHHHH
Confidence 345566677889999999999999998864 223 6789999999999999999999999887643222 57889
Q ss_pred HHHHHHHHHhhcHHHHHHHHHHHHHH
Q 007571 468 WRRAQAYDMLALAKESLLDAILFINE 493 (598)
Q Consensus 468 yRRAqAy~~LGdy~EAl~d~~kALel 493 (598)
..+..+|...|++++|+..|.+..+.
T Consensus 723 N~LI~gy~k~G~~eeAlelf~eM~~~ 748 (1060)
T PLN03218 723 NALITALCEGNQLPKALEVLSEMKRL 748 (1060)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHc
Confidence 99999999999999999999987654
No 236
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=92.76 E-value=0.53 Score=52.83 Aligned_cols=110 Identities=12% Similarity=0.029 Sum_probs=85.5
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHH-HHhCCCC---chHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHH-------
Q 007571 387 AALVVKLEGNSLFSAGNISGAASKYSEA-LALCPMR---SKKERVVLYSNRAQCHLLMQQPLAAISDATRALC------- 455 (598)
Q Consensus 387 ~A~~lKeeGN~lfk~GdY~eAIe~YskA-Lel~P~~---~~~~~a~ly~NRA~cylKLgdyeeAI~D~~kALe------- 455 (598)
.+..+.-+.+..|-.|+|..|.+..... |...|.. +.-....+++|+|-+++.++.|.-++..+.+||+
T Consensus 239 s~~~l~LKsq~eY~~gn~~kA~KlL~~sni~~~~g~~~T~q~~~cif~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~qL~ 318 (696)
T KOG2471|consen 239 SSMALLLKSQLEYAHGNHPKAMKLLLVSNIHKEAGGTITPQLSSCIFNNNLGCIHYQLGCYQASSVLFLKALRNSCSQLR 318 (696)
T ss_pred CcHHHHHHHHHHHHhcchHHHHHHHHhcccccccCccccchhhhheeecCcceEeeehhhHHHHHHHHHHHHHHHHHHHh
Confidence 4667777889999999999999876432 2222221 1122456679999999999999999999999995
Q ss_pred --hCCC------CCcCHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHhcc
Q 007571 456 --LHNP------LNRHAKSLWRRAQAYDMLALAKESLLDAILFINECSQ 496 (598)
Q Consensus 456 --LdP~------~~~~~KAyyRRAqAy~~LGdy~EAl~d~~kALel~~k 496 (598)
+.|. .+.....+|+.|..|+.+|+...|.++|.++.+.+-.
T Consensus 319 ~g~~~~~~~tls~nks~eilYNcG~~~Lh~grPl~AfqCf~~av~vfh~ 367 (696)
T KOG2471|consen 319 NGLKPAKTFTLSQNKSMEILYNCGLLYLHSGRPLLAFQCFQKAVHVFHR 367 (696)
T ss_pred ccCCCCcceehhcccchhhHHhhhHHHHhcCCcHHHHHHHHHHHHHHhc
Confidence 2232 1336789999999999999999999999999999865
No 237
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=92.72 E-value=3.7 Score=45.09 Aligned_cols=106 Identities=13% Similarity=-0.068 Sum_probs=74.0
Q ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCcC
Q 007571 384 KQAAALVVKLEGNSLFSAGNISGAASKYSEALALCPMRSKKERVVLYSNRAQCHLLMQQPLAAISDATRALCLHNPLNRH 463 (598)
Q Consensus 384 ~~~~A~~lKeeGN~lfk~GdY~eAIe~YskALel~P~~~~~~~a~ly~NRA~cylKLgdyeeAI~D~~kALeLdP~~~~~ 463 (598)
+...+.....+|-..+..|+|.+|.+...++-+..+.. ...|.--|.+--.+|+++.|=....+|-++.++. .
T Consensus 80 Krrra~~~~~egl~~l~eG~~~qAEkl~~rnae~~e~p-----~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~--~ 152 (400)
T COG3071 80 KRRRARKALNEGLLKLFEGDFQQAEKLLRRNAEHGEQP-----VLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDD--T 152 (400)
T ss_pred HHHHHHHHHHHHHHHHhcCcHHHHHHHHHHhhhcCcch-----HHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCc--h
Confidence 45678888888988899999999999999988776665 5556655666666666666666666666663332 3
Q ss_pred HHHHHHHHHHHHHhhcHHHHHHHHHHHHHHhcc
Q 007571 464 AKSLWRRAQAYDMLALAKESLLDAILFINECSQ 496 (598)
Q Consensus 464 ~KAyyRRAqAy~~LGdy~EAl~d~~kALel~~k 496 (598)
.-.+..|++.+...|++..|......+++..|.
T Consensus 153 l~v~ltrarlll~~~d~~aA~~~v~~ll~~~pr 185 (400)
T COG3071 153 LAVELTRARLLLNRRDYPAARENVDQLLEMTPR 185 (400)
T ss_pred HHHHHHHHHHHHhCCCchhHHHHHHHHHHhCcC
Confidence 455566666666666666666666666666554
No 238
>PRK10941 hypothetical protein; Provisional
Probab=92.41 E-value=2 Score=44.97 Aligned_cols=79 Identities=15% Similarity=0.013 Sum_probs=67.5
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCcCHHHH
Q 007571 388 ALVVKLEGNSLFSAGNISGAASKYSEALALCPMRSKKERVVLYSNRAQCHLLMQQPLAAISDATRALCLHNPLNRHAKSL 467 (598)
Q Consensus 388 A~~lKeeGN~lfk~GdY~eAIe~YskALel~P~~~~~~~a~ly~NRA~cylKLgdyeeAI~D~~kALeLdP~~~~~~KAy 467 (598)
..-+.+.-+.+.+.++|+.|+..-...+.+.|++ +.-+--||.+|.+++.+..|+.|++.-|+..|+ .+.+-
T Consensus 181 ~Rml~nLK~~~~~~~~~~~AL~~~e~ll~l~P~d-----p~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~---dp~a~ 252 (269)
T PRK10941 181 RKLLDTLKAALMEEKQMELALRASEALLQFDPED-----PYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPE---DPISE 252 (269)
T ss_pred HHHHHHHHHHHHHcCcHHHHHHHHHHHHHhCCCC-----HHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCC---chhHH
Confidence 4445556677899999999999999999999998 777888999999999999999999999999999 77666
Q ss_pred HHHHHHH
Q 007571 468 WRRAQAY 474 (598)
Q Consensus 468 yRRAqAy 474 (598)
.-+.+..
T Consensus 253 ~ik~ql~ 259 (269)
T PRK10941 253 MIRAQIH 259 (269)
T ss_pred HHHHHHH
Confidence 5555443
No 239
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=92.35 E-value=3.6 Score=41.53 Aligned_cols=125 Identities=15% Similarity=-0.018 Sum_probs=91.8
Q ss_pred HHcCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHH-hCCCCCcCHHHHHHHHHHHHHh
Q 007571 399 FSAGNISGAASKYSEALALCPMRSKKERVVLYSNRAQCHLLMQQPLAAISDATRALC-LHNPLNRHAKSLWRRAQAYDML 477 (598)
Q Consensus 399 fk~GdY~eAIe~YskALel~P~~~~~~~a~ly~NRA~cylKLgdyeeAI~D~~kALe-LdP~~~~~~KAyyRRAqAy~~L 477 (598)
-++=|.+.++..-++.++..|+. .-...+|.+...+|++.+|...|.+++. +-.+ .+..+.-++++...+
T Consensus 67 ~q~ldP~R~~Rea~~~~~~ApTv------qnr~rLa~al~elGr~~EA~~hy~qalsG~fA~---d~a~lLglA~Aqfa~ 137 (251)
T COG4700 67 QQKLDPERHLREATEELAIAPTV------QNRYRLANALAELGRYHEAVPHYQQALSGIFAH---DAAMLLGLAQAQFAI 137 (251)
T ss_pred HHhcChhHHHHHHHHHHhhchhH------HHHHHHHHHHHHhhhhhhhHHHHHHHhccccCC---CHHHHHHHHHHHHhh
Confidence 34446666777778888888984 5566789999999999999999999985 3344 678899999999999
Q ss_pred hcHHHHHHHHHHHHHHhccCCCCchhhccCChHHHHHHHH---HHHHHHHHHHHHHHHhcCCCcC
Q 007571 478 ALAKESLLDAILFINECSQSNDPDLSLRQNKVPDYAERLV---KKQMRAAWLFREAAIKHGGVHG 539 (598)
Q Consensus 478 Gdy~EAl~d~~kALel~~k~~d~~~~~r~~Ki~~~ierlL---~Kqk~a~~~f~eA~~k~~~i~~ 539 (598)
+++.+|...+++..+..|.-. .+.-.-...|.+ .|.-+++..|+.+...+|+.+.
T Consensus 138 ~~~A~a~~tLe~l~e~~pa~r-------~pd~~Ll~aR~laa~g~~a~Aesafe~a~~~ypg~~a 195 (251)
T COG4700 138 QEFAAAQQTLEDLMEYNPAFR-------SPDGHLLFARTLAAQGKYADAESAFEVAISYYPGPQA 195 (251)
T ss_pred ccHHHHHHHHHHHhhcCCccC-------CCCchHHHHHHHHhcCCchhHHHHHHHHHHhCCCHHH
Confidence 999999999999998876533 222222223333 3445566777777777766543
No 240
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=92.20 E-value=2.3 Score=44.74 Aligned_cols=87 Identities=18% Similarity=0.082 Sum_probs=76.9
Q ss_pred cCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCcCHHHHHHHHHHHHHhhcH
Q 007571 401 AGNISGAASKYSEALALCPMRSKKERVVLYSNRAQCHLLMQQPLAAISDATRALCLHNPLNRHAKSLWRRAQAYDMLALA 480 (598)
Q Consensus 401 ~GdY~eAIe~YskALel~P~~~~~~~a~ly~NRA~cylKLgdyeeAI~D~~kALeLdP~~~~~~KAyyRRAqAy~~LGdy 480 (598)
.+++..|.-.|++--+..|.. +.+.+-.|.|++.+++|++|......||.-+++ .+..+-+.-.+-..+|..
T Consensus 186 gek~qdAfyifeE~s~k~~~T-----~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~---dpetL~Nliv~a~~~Gkd 257 (299)
T KOG3081|consen 186 GEKIQDAFYIFEELSEKTPPT-----PLLLNGQAVCHLQLGRYEEAESLLEEALDKDAK---DPETLANLIVLALHLGKD 257 (299)
T ss_pred chhhhhHHHHHHHHhcccCCC-----hHHHccHHHHHHHhcCHHHHHHHHHHHHhccCC---CHHHHHHHHHHHHHhCCC
Confidence 457999999999988855554 788999999999999999999999999999999 999999999999999999
Q ss_pred HHHHHHHHHHHHHhc
Q 007571 481 KESLLDAILFINECS 495 (598)
Q Consensus 481 ~EAl~d~~kALel~~ 495 (598)
.++...+..-++...
T Consensus 258 ~~~~~r~l~QLk~~~ 272 (299)
T KOG3081|consen 258 AEVTERNLSQLKLSH 272 (299)
T ss_pred hHHHHHHHHHHHhcC
Confidence 999888777666643
No 241
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=91.95 E-value=0.69 Score=40.31 Aligned_cols=60 Identities=15% Similarity=0.099 Sum_probs=40.3
Q ss_pred HHHcCCHHHHHHHHHHHHHhCCCCch----HHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHhC
Q 007571 398 LFSAGNISGAASKYSEALALCPMRSK----KERVVLYSNRAQCHLLMQQPLAAISDATRALCLH 457 (598)
Q Consensus 398 lfk~GdY~eAIe~YskALel~P~~~~----~~~a~ly~NRA~cylKLgdyeeAI~D~~kALeLd 457 (598)
..+.|+|..|++...+..+....... .....+..|+|.++..+|++++|+..+++|+.+-
T Consensus 8 ~~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~~A 71 (94)
T PF12862_consen 8 ALRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIRLA 71 (94)
T ss_pred HHHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence 45678888888888888877544311 1234556677777777777777777777777653
No 242
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=91.85 E-value=0.35 Score=34.45 Aligned_cols=30 Identities=17% Similarity=-0.012 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHh
Q 007571 427 VVLYSNRAQCHLLMQQPLAAISDATRALCL 456 (598)
Q Consensus 427 a~ly~NRA~cylKLgdyeeAI~D~~kALeL 456 (598)
+.++.|+|.+|..+|+|++|+..+.+++.+
T Consensus 2 a~~~~~la~~~~~~g~~~~A~~~~~~al~~ 31 (42)
T PF13374_consen 2 ASALNNLANAYRAQGRYEEALELLEEALEI 31 (42)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhhcchhhHHHHHHHHH
Confidence 456778888888888888888888887765
No 243
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=91.48 E-value=5.2 Score=41.53 Aligned_cols=114 Identities=15% Similarity=0.010 Sum_probs=86.5
Q ss_pred cCChHHHHHHHHHHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhCCC----C-----chHHHHHHHHHHHHHHHHcCChH
Q 007571 375 NMLKEDLHIKQAAALVVKLEGNSLFSAG-NISGAASKYSEALALCPM----R-----SKKERVVLYSNRAQCHLLMQQPL 444 (598)
Q Consensus 375 ~ms~eElee~~~~A~~lKeeGN~lfk~G-dY~eAIe~YskALel~P~----~-----~~~~~a~ly~NRA~cylKLgdye 444 (598)
.++++.. ...+..+.+-|..+++++ +|+.|+...++|+++.+. . ..+.+..++..++.+|+..+.++
T Consensus 25 ~~~~~~~---~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~elr~~iL~~La~~~l~~~~~~ 101 (278)
T PF08631_consen 25 SLDPDMA---EELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSELRLSILRLLANAYLEWDTYE 101 (278)
T ss_pred cCCcHHH---HHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHHHHHHHHHHHHHHHcCCChH
Confidence 4455433 578999999999999999 999999999999998422 1 33678999999999999999876
Q ss_pred HHHHHHHHHHHh----CCCCCcCHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHhc
Q 007571 445 AAISDATRALCL----HNPLNRHAKSLWRRAQAYDMLALAKESLLDAILFINECS 495 (598)
Q Consensus 445 eAI~D~~kALeL----dP~~~~~~KAyyRRAqAy~~LGdy~EAl~d~~kALel~~ 495 (598)
...+ |.++++. -|+ .+-.++-.-+++...++.+++...+.+.+...+
T Consensus 102 ~~~k-a~~~l~~l~~e~~~---~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~~ 152 (278)
T PF08631_consen 102 SVEK-ALNALRLLESEYGN---KPEVFLLKLEILLKSFDEEEYEEILMRMIRSVD 152 (278)
T ss_pred HHHH-HHHHHHHHHHhCCC---CcHHHHHHHHHHhccCChhHHHHHHHHHHHhcc
Confidence 5444 5555443 355 566665566666668888888888888887765
No 244
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=91.37 E-value=3.5 Score=42.78 Aligned_cols=108 Identities=13% Similarity=-0.030 Sum_probs=78.8
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCch-HHHHHHHHHHHHHHHH-cCChHHHHHHHHHHHHhCCCC---Cc
Q 007571 388 ALVVKLEGNSLFSAGNISGAASKYSEALALCPMRSK-KERVVLYSNRAQCHLL-MQQPLAAISDATRALCLHNPL---NR 462 (598)
Q Consensus 388 A~~lKeeGN~lfk~GdY~eAIe~YskALel~P~~~~-~~~a~ly~NRA~cylK-LgdyeeAI~D~~kALeLdP~~---~~ 462 (598)
+..+. ++-..|++++..+|+.+..+||++..+-.+ ..-+..+.-+|..|-. +.++++||..|++|-+.-... ..
T Consensus 74 at~Yv-eA~~cykk~~~~eAv~cL~~aieIyt~~Grf~~aAk~~~~iaEiyEsdl~d~ekaI~~YE~Aae~yk~ees~ss 152 (288)
T KOG1586|consen 74 ATTYV-EAANCYKKVDPEEAVNCLEKAIEIYTDMGRFTMAAKHHIEIAEIYESDLQDFEKAIAHYEQAAEYYKGEESVSS 152 (288)
T ss_pred HHHHH-HHHHHhhccChHHHHHHHHHHHHHHHhhhHHHHHHhhhhhHHHHHhhhHHHHHHHHHHHHHHHHHHcchhhhhh
Confidence 33444 344467888999999999999998655311 1224455566777764 489999999999998653321 11
Q ss_pred CHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHhcc
Q 007571 463 HAKSLWRRAQAYDMLALAKESLLDAILFINECSQ 496 (598)
Q Consensus 463 ~~KAyyRRAqAy~~LGdy~EAl~d~~kALel~~k 496 (598)
.-|.+...|+---.+++|.+|+..|++......+
T Consensus 153 ANKC~lKvA~yaa~leqY~~Ai~iyeqva~~s~~ 186 (288)
T KOG1586|consen 153 ANKCLLKVAQYAAQLEQYSKAIDIYEQVARSSLD 186 (288)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 4488888888888999999999999998887665
No 245
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=91.07 E-value=0.35 Score=49.73 Aligned_cols=59 Identities=22% Similarity=0.146 Sum_probs=55.5
Q ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC
Q 007571 397 SLFSAGNISGAASKYSEALALCPMRSKKERVVLYSNRAQCHLLMQQPLAAISDATRALCLHNPL 460 (598)
Q Consensus 397 ~lfk~GdY~eAIe~YskALel~P~~~~~~~a~ly~NRA~cylKLgdyeeAI~D~~kALeLdP~~ 460 (598)
.+++.++++.|.+.|.+|+.+.|.. ..-|...+.-..|-|+++.|.+.++++|+++|..
T Consensus 4 ~~~~~~D~~aaaely~qal~lap~w-----~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~D 62 (287)
T COG4976 4 MLAESGDAEAAAELYNQALELAPEW-----AAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPED 62 (287)
T ss_pred hhcccCChHHHHHHHHHHhhcCchh-----hhhhhhcchhhhhcccHHHHHHHHHHHHcCCccc
Confidence 4578899999999999999999998 8999999999999999999999999999999983
No 246
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=90.59 E-value=10 Score=39.73 Aligned_cols=107 Identities=10% Similarity=-0.085 Sum_probs=69.6
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCc-hHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-----CCCC
Q 007571 388 ALVVKLEGNSLFSAGNISGAASKYSEALALCPMRS-KKERVVLYSNRAQCHLLMQQPLAAISDATRALCLH-----NPLN 461 (598)
Q Consensus 388 A~~lKeeGN~lfk~GdY~eAIe~YskALel~P~~~-~~~~a~ly~NRA~cylKLgdyeeAI~D~~kALeLd-----P~~~ 461 (598)
+..+-..++.+-..++|++|-.+..+|++...++. .-.-+..|-.-++..-++..+.++...+++|..+- |+
T Consensus 31 as~yekAAvafRnAk~feKakdcLlkA~~~yEnnrslfhAAKayEqaamLake~~klsEvvdl~eKAs~lY~E~Gspd-- 108 (308)
T KOG1585|consen 31 ASLYEKAAVAFRNAKKFEKAKDCLLKASKGYENNRSLFHAAKAYEQAAMLAKELSKLSEVVDLYEKASELYVECGSPD-- 108 (308)
T ss_pred HHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCCcc--
Confidence 33344444455556788888888888887655441 12235566666677778888999999999988763 33
Q ss_pred cCHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHhccC
Q 007571 462 RHAKSLWRRAQAYDMLALAKESLLDAILFINECSQS 497 (598)
Q Consensus 462 ~~~KAyyRRAqAy~~LGdy~EAl~d~~kALel~~k~ 497 (598)
-.-.-..+|--....-+.++|+..|++++.+...+
T Consensus 109 -tAAmaleKAak~lenv~Pd~AlqlYqralavve~~ 143 (308)
T KOG1585|consen 109 -TAAMALEKAAKALENVKPDDALQLYQRALAVVEED 143 (308)
T ss_pred -hHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhcc
Confidence 22222233333445567889999999998888763
No 247
>smart00185 ARM Armadillo/beta-catenin-like repeats. Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin.
Probab=90.58 E-value=0.41 Score=34.25 Aligned_cols=38 Identities=34% Similarity=0.400 Sum_probs=31.0
Q ss_pred HHHHHHhcCCchHHHHHhcccchhhHHHHHHHHhhcccc
Q 007571 97 FAESAVHAGVIPPLVELLRGRLTWVEQRVAVRALGHLAT 135 (598)
Q Consensus 97 ~~~~av~~~~~~~l~~~~~~~~~wve~r~~~r~l~h~a~ 135 (598)
-+..-+++|+||+|++||. .-..-=|+.|+.||+.|++
T Consensus 4 ~~~~i~~~g~i~~L~~ll~-~~~~~i~~~a~~aL~nl~~ 41 (41)
T smart00185 4 QKQAVVDAGGLPALVELLK-SEDEEVVKEAAWALSNLSS 41 (41)
T ss_pred HHHHHHHCCCHHHHHHHHc-CCCHHHHHHHHHHHHHHcC
Confidence 3455679999999999998 3467779999999998863
No 248
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=90.58 E-value=1.4 Score=51.31 Aligned_cols=93 Identities=10% Similarity=-0.098 Sum_probs=50.7
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCchHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCcCHHH
Q 007571 389 LVVKLEGNSLFSAGNISGAASKYSEALAL--CPMRSKKERVVLYSNRAQCHLLMQQPLAAISDATRALCLHNPLNRHAKS 466 (598)
Q Consensus 389 ~~lKeeGN~lfk~GdY~eAIe~YskALel--~P~~~~~~~a~ly~NRA~cylKLgdyeeAI~D~~kALeLdP~~~~~~KA 466 (598)
..+......+.+.|++++|++.|.+.++. .|+ ...|...-.++.+.|+.++|...++...+..+- .++...
T Consensus 392 ~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd------~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~-~p~~~~ 464 (697)
T PLN03081 392 ISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPN------HVTFLAVLSACRYSGLSEQGWEIFQSMSENHRI-KPRAMH 464 (697)
T ss_pred eeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCC------HHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCC-CCCccc
Confidence 33445555566666666666666665543 233 344555555666666666666666665542111 003345
Q ss_pred HHHHHHHHHHhhcHHHHHHHHH
Q 007571 467 LWRRAQAYDMLALAKESLLDAI 488 (598)
Q Consensus 467 yyRRAqAy~~LGdy~EAl~d~~ 488 (598)
|.-...+|...|++++|.+.++
T Consensus 465 y~~li~~l~r~G~~~eA~~~~~ 486 (697)
T PLN03081 465 YACMIELLGREGLLDEAYAMIR 486 (697)
T ss_pred hHhHHHHHHhcCCHHHHHHHHH
Confidence 5556666666666666655443
No 249
>PLN03077 Protein ECB2; Provisional
Probab=90.26 E-value=2.5 Score=50.49 Aligned_cols=96 Identities=9% Similarity=-0.059 Sum_probs=66.8
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCcCHHHHHH
Q 007571 390 VVKLEGNSLFSAGNISGAASKYSEALALCPMRSKKERVVLYSNRAQCHLLMQQPLAAISDATRALCLHNPLNRHAKSLWR 469 (598)
Q Consensus 390 ~lKeeGN~lfk~GdY~eAIe~YskALel~P~~~~~~~a~ly~NRA~cylKLgdyeeAI~D~~kALeLdP~~~~~~KAyyR 469 (598)
.+.-....+.+.|++++|.+.+++. ...|+ +..|..+-.++..-++.+.|....+++++++|+ ++..|..
T Consensus 627 ~y~~lv~~l~r~G~~~eA~~~~~~m-~~~pd------~~~~~aLl~ac~~~~~~e~~e~~a~~l~~l~p~---~~~~y~l 696 (857)
T PLN03077 627 HYACVVDLLGRAGKLTEAYNFINKM-PITPD------PAVWGALLNACRIHRHVELGELAAQHIFELDPN---SVGYYIL 696 (857)
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHC-CCCCC------HHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCC---CcchHHH
Confidence 3444556666777777777776653 23444 344555555556677777777778888888888 8888888
Q ss_pred HHHHHHHhhcHHHHHHHHHHHHHHhc
Q 007571 470 RAQAYDMLALAKESLLDAILFINECS 495 (598)
Q Consensus 470 RAqAy~~LGdy~EAl~d~~kALel~~ 495 (598)
++.+|...|++++|.+..+...+...
T Consensus 697 l~n~ya~~g~~~~a~~vr~~M~~~g~ 722 (857)
T PLN03077 697 LCNLYADAGKWDEVARVRKTMRENGL 722 (857)
T ss_pred HHHHHHHCCChHHHHHHHHHHHHcCC
Confidence 88888888888888877776655443
No 250
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=90.12 E-value=1.8 Score=51.61 Aligned_cols=89 Identities=19% Similarity=-0.031 Sum_probs=48.9
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCCCchHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCcCHH
Q 007571 387 AALVVKLEGNSLFSAGNISGAASKYSEALAL-CPMRSKKERVVLYSNRAQCHLLMQQPLAAISDATRALCLHNPLNRHAK 465 (598)
Q Consensus 387 ~A~~lKeeGN~lfk~GdY~eAIe~YskALel-~P~~~~~~~a~ly~NRA~cylKLgdyeeAI~D~~kALeLdP~~~~~~K 465 (598)
..-+..-+|-.+++.|++++|..+. +|+.. -+++ -..+.-+-.||..++++++|...|.+++..+|+ -+
T Consensus 42 ~~~a~vLkaLsl~r~gk~~ea~~~L-e~~~~~~~~D-----~~tLq~l~~~y~d~~~~d~~~~~Ye~~~~~~P~----ee 111 (932)
T KOG2053|consen 42 ALYAKVLKALSLFRLGKGDEALKLL-EALYGLKGTD-----DLTLQFLQNVYRDLGKLDEAVHLYERANQKYPS----EE 111 (932)
T ss_pred cHHHHHHHHHHHHHhcCchhHHHHH-hhhccCCCCc-----hHHHHHHHHHHHHHhhhhHHHHHHHHHHhhCCc----HH
Confidence 3444445666666666666666433 23332 2222 233334556677777777777777777766665 34
Q ss_pred HHHHHHHHHHHhhcHHHHHH
Q 007571 466 SLWRRAQAYDMLALAKESLL 485 (598)
Q Consensus 466 AyyRRAqAy~~LGdy~EAl~ 485 (598)
.++..=.||..-+.|.+=-+
T Consensus 112 ll~~lFmayvR~~~yk~qQk 131 (932)
T KOG2053|consen 112 LLYHLFMAYVREKSYKKQQK 131 (932)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 44444556666666655443
No 251
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=90.09 E-value=0.88 Score=36.24 Aligned_cols=32 Identities=9% Similarity=-0.082 Sum_probs=28.7
Q ss_pred HHHHHHHHHHHHhhcHHHHHHHHHHHHHHhcc
Q 007571 465 KSLWRRAQAYDMLALAKESLLDAILFINECSQ 496 (598)
Q Consensus 465 KAyyRRAqAy~~LGdy~EAl~d~~kALel~~k 496 (598)
..+|.+|.+++.+|+|++|...+..+|+..|+
T Consensus 2 d~lY~lAig~ykl~~Y~~A~~~~~~lL~~eP~ 33 (53)
T PF14853_consen 2 DCLYYLAIGHYKLGEYEKARRYCDALLEIEPD 33 (53)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHTTS
T ss_pred hhHHHHHHHHHHhhhHHHHHHHHHHHHhhCCC
Confidence 45789999999999999999999999999886
No 252
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=90.08 E-value=2.9 Score=45.39 Aligned_cols=97 Identities=16% Similarity=-0.019 Sum_probs=71.5
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCch---------------------------------HHHHHHHHHHHH
Q 007571 389 LVVKLEGNSLFSAGNISGAASKYSEALALCPMRSK---------------------------------KERVVLYSNRAQ 435 (598)
Q Consensus 389 ~~lKeeGN~lfk~GdY~eAIe~YskALel~P~~~~---------------------------------~~~a~ly~NRA~ 435 (598)
+..-..+-.+|..|++.+|...+.|.|+-.|.+.- +..+-++--.|.
T Consensus 104 Ek~h~~aai~~~~g~~h~a~~~wdklL~d~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaF 183 (491)
T KOG2610|consen 104 EKRHAKAAILWGRGKHHEAAIEWDKLLDDYPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAF 183 (491)
T ss_pred HhhhhhHHHhhccccccHHHHHHHHHHHhCchhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHh
Confidence 34445566678888888888888888888887500 111333444678
Q ss_pred HHHHcCChHHHHHHHHHHHHhCCCCCcCHHHHHHHHHHHHHhhcHHHHHHHHH
Q 007571 436 CHLLMQQPLAAISDATRALCLHNPLNRHAKSLWRRAQAYDMLALAKESLLDAI 488 (598)
Q Consensus 436 cylKLgdyeeAI~D~~kALeLdP~~~~~~KAyyRRAqAy~~LGdy~EAl~d~~ 488 (598)
++...|-|++|.+.+++|++++|. ..-|..-.+.++.+.|+++++++...
T Consensus 184 gL~E~g~y~dAEk~A~ralqiN~~---D~Wa~Ha~aHVlem~~r~Keg~eFM~ 233 (491)
T KOG2610|consen 184 GLEECGIYDDAEKQADRALQINRF---DCWASHAKAHVLEMNGRHKEGKEFMY 233 (491)
T ss_pred hHHHhccchhHHHHHHhhccCCCc---chHHHHHHHHHHHhcchhhhHHHHHH
Confidence 889999999999999999999998 66677777777777777777765443
No 253
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=89.60 E-value=2.7 Score=46.43 Aligned_cols=102 Identities=19% Similarity=0.095 Sum_probs=83.1
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHhC----CC-CCc
Q 007571 388 ALVVKLEGNSLFSAGNISGAASKYSEALALCPMRSKKERVVLYSNRAQCHLLMQQPLAAISDATRALCLH----NP-LNR 462 (598)
Q Consensus 388 A~~lKeeGN~lfk~GdY~eAIe~YskALel~P~~~~~~~a~ly~NRA~cylKLgdyeeAI~D~~kALeLd----P~-~~~ 462 (598)
-..+.+.|..+...|+++.|++.|.++-.++... +.....+.|.-.+-+-+++|........+|.+-- .- ...
T Consensus 150 Rra~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~--khvInm~ln~i~VSI~~~nw~hv~sy~~~A~st~~~~~~~~q~v 227 (466)
T KOG0686|consen 150 RRALEDLGDHYLDCGQLDNALRCYSRARDYCTSA--KHVINMCLNLILVSIYMGNWGHVLSYISKAESTPDANENLAQEV 227 (466)
T ss_pred HHHHHHHHHHHHHhccHHHHHhhhhhhhhhhcch--HHHHHHHHHHHHHHHhhcchhhhhhHHHHHHhCchhhhhHHHhc
Confidence 4457788999999999999999999999888764 5567888899999999999999999998887651 00 011
Q ss_pred CHHHHHHHHHHHHHhhcHHHHHHHHHHHH
Q 007571 463 HAKSLWRRAQAYDMLALAKESLLDAILFI 491 (598)
Q Consensus 463 ~~KAyyRRAqAy~~LGdy~EAl~d~~kAL 491 (598)
.++...-.|.|.+.+++|+.|...|..+.
T Consensus 228 ~~kl~C~agLa~L~lkkyk~aa~~fL~~~ 256 (466)
T KOG0686|consen 228 PAKLKCAAGLANLLLKKYKSAAKYFLLAE 256 (466)
T ss_pred CcchHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 55778888999999999999998887664
No 254
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=89.54 E-value=5.9 Score=40.07 Aligned_cols=99 Identities=13% Similarity=-0.047 Sum_probs=73.1
Q ss_pred HHHHcCCHHHHHHHHHHHHHhCCC--CchHHHHHHHHHHHHHHHHcCC-------hHHHHHHHHHHHHhCCCC---CcCH
Q 007571 397 SLFSAGNISGAASKYSEALALCPM--RSKKERVVLYSNRAQCHLLMQQ-------PLAAISDATRALCLHNPL---NRHA 464 (598)
Q Consensus 397 ~lfk~GdY~eAIe~YskALel~P~--~~~~~~a~ly~NRA~cylKLgd-------yeeAI~D~~kALeLdP~~---~~~~ 464 (598)
.+-....+++|++.|.-||-.... ......+.++..+|=+|..+++ +..|+..+.+|++....+ ....
T Consensus 86 ~~~~~Rt~~~ai~~YkLAll~~~~~~~~~s~~A~l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~ 165 (214)
T PF09986_consen 86 DFSGERTLEEAIESYKLALLCAQIKKEKPSKKAGLCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEA 165 (214)
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHH
Confidence 344556789999999988864211 1123568888888889998888 556667777777655331 1146
Q ss_pred HHHHHHHHHHHHhhcHHHHHHHHHHHHHHhc
Q 007571 465 KSLWRRAQAYDMLALAKESLLDAILFINECS 495 (598)
Q Consensus 465 KAyyRRAqAy~~LGdy~EAl~d~~kALel~~ 495 (598)
..+|-.|.....+|++++|+..|.+.+..-.
T Consensus 166 ~l~YLigeL~rrlg~~~eA~~~fs~vi~~~~ 196 (214)
T PF09986_consen 166 TLLYLIGELNRRLGNYDEAKRWFSRVIGSKK 196 (214)
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHcCCC
Confidence 8899999999999999999999999998744
No 255
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=89.22 E-value=5.2 Score=41.56 Aligned_cols=69 Identities=12% Similarity=-0.025 Sum_probs=53.5
Q ss_pred HHHHHHHHHHHHHHHHc------CChHHHHHHHHHHHHhCCCCCcCHHHHHHHHHHHHHhhcH-----------------
Q 007571 424 KERVVLYSNRAQCHLLM------QQPLAAISDATRALCLHNPLNRHAKSLWRRAQAYDMLALA----------------- 480 (598)
Q Consensus 424 ~~~a~ly~NRA~cylKL------gdyeeAI~D~~kALeLdP~~~~~~KAyyRRAqAy~~LGdy----------------- 480 (598)
...+.++.-+|.-...+ +.+++++..|.+|++++|. +.++++..|..+..+-+.
T Consensus 249 ~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~~~~---~~k~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 325 (352)
T PF02259_consen 249 ELKAKAFLLLAKWLDELYSKLSSESSDEILKYYKEATKLDPS---WEKAWHSWALFNDKLLESDPREKEESSQEDRSEYL 325 (352)
T ss_pred HHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHhChh---HHHHHHHHHHHHHHHHHhhhhcccccchhHHHHHH
Confidence 44567777777776677 8899999999999999999 999999999888776333
Q ss_pred HHHHHHHHHHHHHhc
Q 007571 481 KESLLDAILFINECS 495 (598)
Q Consensus 481 ~EAl~d~~kALel~~ 495 (598)
..|+..|-+++...+
T Consensus 326 ~~ai~~y~~al~~~~ 340 (352)
T PF02259_consen 326 EQAIEGYLKALSLGS 340 (352)
T ss_pred HHHHHHHHHHHhhCC
Confidence 336666777776654
No 256
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=88.99 E-value=4.2 Score=35.57 Aligned_cols=77 Identities=12% Similarity=0.021 Sum_probs=49.1
Q ss_pred HHHHHHHHHHhCCCCchHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCcCHHHHHHHHHHHHHhhcHHHHHHH
Q 007571 407 AASKYSEALALCPMRSKKERVVLYSNRAQCHLLMQQPLAAISDATRALCLHNPLNRHAKSLWRRAQAYDMLALAKESLLD 486 (598)
Q Consensus 407 AIe~YskALel~P~~~~~~~a~ly~NRA~cylKLgdyeeAI~D~~kALeLdP~~~~~~KAyyRRAqAy~~LGdy~EAl~d 486 (598)
.+....++++.+|.+ ..+...+|..++..|++++|+..+-.++..+++.. ...+--.+-.++..+|.-+.-...
T Consensus 7 ~~~al~~~~a~~P~D-----~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~-~~~ar~~ll~~f~~lg~~~plv~~ 80 (90)
T PF14561_consen 7 DIAALEAALAANPDD-----LDARYALADALLAAGDYEEALDQLLELVRRDRDYE-DDAARKRLLDIFELLGPGDPLVSE 80 (90)
T ss_dssp HHHHHHHHHHHSTT------HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCC-CCHHHHHHHHHHHHH-TT-HHHHH
T ss_pred cHHHHHHHHHcCCCC-----HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccc-ccHHHHHHHHHHHHcCCCChHHHH
Confidence 356677888888888 78888888888888888888888888888887721 234444444555555554444444
Q ss_pred HHH
Q 007571 487 AIL 489 (598)
Q Consensus 487 ~~k 489 (598)
|++
T Consensus 81 ~RR 83 (90)
T PF14561_consen 81 YRR 83 (90)
T ss_dssp HHH
T ss_pred HHH
Confidence 433
No 257
>PLN03077 Protein ECB2; Provisional
Probab=88.82 E-value=2.7 Score=50.16 Aligned_cols=96 Identities=7% Similarity=-0.125 Sum_probs=65.9
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCchHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCcCHH
Q 007571 388 ALVVKLEGNSLFSAGNISGAASKYSEALAL--CPMRSKKERVVLYSNRAQCHLLMQQPLAAISDATRALCLHNPLNRHAK 465 (598)
Q Consensus 388 A~~lKeeGN~lfk~GdY~eAIe~YskALel--~P~~~~~~~a~ly~NRA~cylKLgdyeeAI~D~~kALeLdP~~~~~~K 465 (598)
...+....+.+.+.|+.++|++.|++.++. .|+. ..|..+-.++.+.|++++|...++...+..+- .++..
T Consensus 554 ~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~------~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi-~P~~~ 626 (857)
T PLN03077 554 VVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDE------VTFISLLCACSRSGMVTQGLEYFHSMEEKYSI-TPNLK 626 (857)
T ss_pred hhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCc------ccHHHHHHHHhhcChHHHHHHHHHHHHHHhCC-CCchH
Confidence 334556667777888888888888877763 4543 44555656777888888888888877633221 11467
Q ss_pred HHHHHHHHHHHhhcHHHHHHHHHHH
Q 007571 466 SLWRRAQAYDMLALAKESLLDAILF 490 (598)
Q Consensus 466 AyyRRAqAy~~LGdy~EAl~d~~kA 490 (598)
.|.-+..+|...|++++|...+++.
T Consensus 627 ~y~~lv~~l~r~G~~~eA~~~~~~m 651 (857)
T PLN03077 627 HYACVVDLLGRAGKLTEAYNFINKM 651 (857)
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHC
Confidence 7788888888888888887766653
No 258
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=88.55 E-value=2.4 Score=47.58 Aligned_cols=89 Identities=15% Similarity=0.031 Sum_probs=76.2
Q ss_pred HcCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC-CCcCHHHHHHHHHHHHHhh
Q 007571 400 SAGNISGAASKYSEALALCPMRSKKERVVLYSNRAQCHLLMQQPLAAISDATRALCLHNP-LNRHAKSLWRRAQAYDMLA 478 (598)
Q Consensus 400 k~GdY~eAIe~YskALel~P~~~~~~~a~ly~NRA~cylKLgdyeeAI~D~~kALeLdP~-~~~~~KAyyRRAqAy~~LG 478 (598)
...+...|.+.........|+. +..+...|..+...|+.++|+..+++++..... .....-.+|.+|-++..+.
T Consensus 245 ~~~~~~~a~~lL~~~~~~yP~s-----~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~ 319 (468)
T PF10300_consen 245 EDVPLEEAEELLEEMLKRYPNS-----ALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQH 319 (468)
T ss_pred cCCCHHHHHHHHHHHHHhCCCc-----HHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHc
Confidence 3556788899999999999998 899999999999999999999999999864433 1224568999999999999
Q ss_pred cHHHHHHHHHHHHHH
Q 007571 479 LAKESLLDAILFINE 493 (598)
Q Consensus 479 dy~EAl~d~~kALel 493 (598)
+|++|...|...++.
T Consensus 320 ~w~~A~~~f~~L~~~ 334 (468)
T PF10300_consen 320 DWEEAAEYFLRLLKE 334 (468)
T ss_pred hHHHHHHHHHHHHhc
Confidence 999999999888775
No 259
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=88.49 E-value=7.3 Score=44.08 Aligned_cols=126 Identities=13% Similarity=0.051 Sum_probs=91.6
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCcCHHHH
Q 007571 388 ALVVKLEGNSLFSAGNISGAASKYSEALALCPMRSKKERVVLYSNRAQCHLLMQQPLAAISDATRALCLHNPLNRHAKSL 467 (598)
Q Consensus 388 A~~lKeeGN~lfk~GdY~eAIe~YskALel~P~~~~~~~a~ly~NRA~cylKLgdyeeAI~D~~kALeLdP~~~~~~KAy 467 (598)
|.-+.--+.-..++.+...|-+..-.||-.+|.+ .++-.--..-+++++++.|-..|.+-|+.+|. +..++
T Consensus 404 aKiWlmyA~feIRq~~l~~ARkiLG~AIG~cPK~------KlFk~YIelElqL~efDRcRkLYEkfle~~Pe---~c~~W 474 (677)
T KOG1915|consen 404 AKIWLMYAQFEIRQLNLTGARKILGNAIGKCPKD------KLFKGYIELELQLREFDRCRKLYEKFLEFSPE---NCYAW 474 (677)
T ss_pred HHHHHHHHHHHHHHcccHHHHHHHHHHhccCCch------hHHHHHHHHHHHHhhHHHHHHHHHHHHhcChH---hhHHH
Confidence 4444455555667788888888888888888874 33333334566889999999999999999999 99999
Q ss_pred HHHHHHHHHhhcHHHHHHHHHHHHHHhccCCCCchhhccCChHHHHHHHHHHHHHHHHHHHHHHHh
Q 007571 468 WRRAQAYDMLALAKESLLDAILFINECSQSNDPDLSLRQNKVPDYAERLVKKQMRAAWLFREAAIK 533 (598)
Q Consensus 468 yRRAqAy~~LGdy~EAl~d~~kALel~~k~~d~~~~~r~~Ki~~~ierlL~Kqk~a~~~f~eA~~k 533 (598)
..-|..-..||+.+.|...|.-|++.... ..+..+++..-........|+.+..-
T Consensus 475 ~kyaElE~~LgdtdRaRaifelAi~qp~l-----------dmpellwkaYIdFEi~~~E~ekaR~L 529 (677)
T KOG1915|consen 475 SKYAELETSLGDTDRARAIFELAISQPAL-----------DMPELLWKAYIDFEIEEGEFEKARAL 529 (677)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHhcCccc-----------ccHHHHHHHhhhhhhhcchHHHHHHH
Confidence 99999999999999999999988876321 24444444444444444444444443
No 260
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=87.17 E-value=25 Score=44.44 Aligned_cols=98 Identities=13% Similarity=-0.111 Sum_probs=79.4
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCcCHHHHHHHHHH
Q 007571 394 EGNSLFSAGNISGAASKYSEALALCPMRSKKERVVLYSNRAQCHLLMQQPLAAISDATRALCLHNPLNRHAKSLWRRAQA 473 (598)
Q Consensus 394 eGN~lfk~GdY~eAIe~YskALel~P~~~~~~~a~ly~NRA~cylKLgdyeeAI~D~~kALeLdP~~~~~~KAyyRRAqA 473 (598)
....|-+.++|++|.+.|+..++..-.. ...|.-.+..+++.++-++|-....+||+--|.. .|.+..-.-|+.
T Consensus 1536 L~~iy~k~ek~~~A~ell~~m~KKF~q~-----~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~-eHv~~IskfAqL 1609 (1710)
T KOG1070|consen 1536 LLGIYEKSEKNDEADELLRLMLKKFGQT-----RKVWIMYADFLLRQNEAEAARELLKRALKSLPKQ-EHVEFISKFAQL 1609 (1710)
T ss_pred HHHHHHHhhcchhHHHHHHHHHHHhcch-----hhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchh-hhHHHHHHHHHH
Confidence 3445667788899999998888877654 7888888888888888888888999998887762 277777778888
Q ss_pred HHHhhcHHHHHHHHHHHHHHhccC
Q 007571 474 YDMLALAKESLLDAILFINECSQS 497 (598)
Q Consensus 474 y~~LGdy~EAl~d~~kALel~~k~ 497 (598)
-++.|+.+.+...|+-.+...|+.
T Consensus 1610 EFk~GDaeRGRtlfEgll~ayPKR 1633 (1710)
T KOG1070|consen 1610 EFKYGDAERGRTLFEGLLSAYPKR 1633 (1710)
T ss_pred HhhcCCchhhHHHHHHHHhhCccc
Confidence 888999999888888888887763
No 261
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=86.58 E-value=14 Score=38.49 Aligned_cols=109 Identities=18% Similarity=0.127 Sum_probs=76.7
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CchHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC---CcC
Q 007571 388 ALVVKLEGNSLFSAGNISGAASKYSEALALCPM-RSKKERVVLYSNRAQCHLLMQQPLAAISDATRALCLHNPL---NRH 463 (598)
Q Consensus 388 A~~lKeeGN~lfk~GdY~eAIe~YskALel~P~-~~~~~~a~ly~NRA~cylKLgdyeeAI~D~~kALeLdP~~---~~~ 463 (598)
+.-+-..||-+--.+++..|-..|-+|-++.-. .++.+-+..|.--+.||-+. +..+|+....+||++-.+- +.-
T Consensus 34 adl~~~Aan~yklaK~w~~AG~aflkaA~~h~k~~skhDaat~YveA~~cykk~-~~~eAv~cL~~aieIyt~~Grf~~a 112 (288)
T KOG1586|consen 34 AELYERAANMYKLAKNWSAAGDAFLKAADLHLKAGSKHDAATTYVEAANCYKKV-DPEEAVNCLEKAIEIYTDMGRFTMA 112 (288)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHhhcc-ChHHHHHHHHHHHHHHHhhhHHHHH
Confidence 333444455555567788888888888776422 24556789999999998876 9999999999999996651 112
Q ss_pred HHHHHHHHHHHHHh-hcHHHHHHHHHHHHHHhccC
Q 007571 464 AKSLWRRAQAYDML-ALAKESLLDAILFINECSQS 497 (598)
Q Consensus 464 ~KAyyRRAqAy~~L-Gdy~EAl~d~~kALel~~k~ 497 (598)
.+-+...|..|..- .+++.|+..|+.+-+.....
T Consensus 113 Ak~~~~iaEiyEsdl~d~ekaI~~YE~Aae~yk~e 147 (288)
T KOG1586|consen 113 AKHHIEIAEIYESDLQDFEKAIAHYEQAAEYYKGE 147 (288)
T ss_pred HhhhhhHHHHHhhhHHHHHHHHHHHHHHHHHHcch
Confidence 34444556666554 78899999999988877653
No 262
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=86.43 E-value=3.2 Score=36.09 Aligned_cols=64 Identities=17% Similarity=0.027 Sum_probs=51.9
Q ss_pred HHHHcCChHHHHHHHHHHHHhCCCCC------cCHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHhccCCC
Q 007571 436 CHLLMQQPLAAISDATRALCLHNPLN------RHAKSLWRRAQAYDMLALAKESLLDAILFINECSQSND 499 (598)
Q Consensus 436 cylKLgdyeeAI~D~~kALeLdP~~~------~~~KAyyRRAqAy~~LGdy~EAl~d~~kALel~~k~~d 499 (598)
-.++.++|..|+....+.+....... ...-++..+|..+...|++++|+..+++++++.....|
T Consensus 7 ~~~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~~Are~~D 76 (94)
T PF12862_consen 7 NALRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIRLARENGD 76 (94)
T ss_pred HHHHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHCC
Confidence 45678999999999988886644311 13568889999999999999999999999999887554
No 263
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=86.21 E-value=7.6 Score=41.08 Aligned_cols=69 Identities=12% Similarity=0.038 Sum_probs=63.9
Q ss_pred HHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCcCHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHhc
Q 007571 424 KERVVLYSNRAQCHLLMQQPLAAISDATRALCLHNPLNRHAKSLWRRAQAYDMLALAKESLLDAILFINECS 495 (598)
Q Consensus 424 ~~~a~ly~NRA~cylKLgdyeeAI~D~~kALeLdP~~~~~~KAyyRRAqAy~~LGdy~EAl~d~~kALel~~ 495 (598)
+....++..++..+...++++.++...++.+.++|- +-++|.++-.+|+..|+...|+..|...-+...
T Consensus 150 e~~~~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~---~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~ 218 (280)
T COG3629 150 ELFIKALTKLAEALIACGRADAVIEHLERLIELDPY---DEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLA 218 (280)
T ss_pred HHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhcCcc---chHHHHHHHHHHHHcCCchHHHHHHHHHHHHhh
Confidence 445888999999999999999999999999999999 999999999999999999999999999887643
No 264
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=85.78 E-value=1.9 Score=30.55 Aligned_cols=31 Identities=23% Similarity=0.174 Sum_probs=27.1
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 007571 388 ALVVKLEGNSLFSAGNISGAASKYSEALALC 418 (598)
Q Consensus 388 A~~lKeeGN~lfk~GdY~eAIe~YskALel~ 418 (598)
+..+...|+.++..|+|++|+..|.+++.+.
T Consensus 2 a~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 32 (42)
T PF13374_consen 2 ASALNNLANAYRAQGRYEEALELLEEALEIR 32 (42)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhhcchhhHHHHHHHHHH
Confidence 5678899999999999999999999999864
No 265
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=85.36 E-value=14 Score=41.84 Aligned_cols=99 Identities=15% Similarity=-0.003 Sum_probs=81.1
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCcCHHHHHH
Q 007571 390 VVKLEGNSLFSAGNISGAASKYSEALALCPMRSKKERVVLYSNRAQCHLLMQQPLAAISDATRALCLHNPLNRHAKSLWR 469 (598)
Q Consensus 390 ~lKeeGN~lfk~GdY~eAIe~YskALel~P~~~~~~~a~ly~NRA~cylKLgdyeeAI~D~~kALeLdP~~~~~~KAyyR 469 (598)
.+..-|.---.++++..|-..|.+||..+-.+ ..++..-|.+-+|.+....|-...++|+.+-|. --+.+|.
T Consensus 75 ~WikYaqwEesq~e~~RARSv~ERALdvd~r~-----itLWlkYae~Emknk~vNhARNv~dRAvt~lPR---VdqlWyK 146 (677)
T KOG1915|consen 75 VWIKYAQWEESQKEIQRARSVFERALDVDYRN-----ITLWLKYAEFEMKNKQVNHARNVWDRAVTILPR---VDQLWYK 146 (677)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHhccccc-----chHHHHHHHHHHhhhhHhHHHHHHHHHHHhcch---HHHHHHH
Confidence 34445555567888999999999999988877 888998899999999999999999999998888 6778887
Q ss_pred HHHHHHHhhcHHHHHHHHHHHHHHhcc
Q 007571 470 RAQAYDMLALAKESLLDAILFINECSQ 496 (598)
Q Consensus 470 RAqAy~~LGdy~EAl~d~~kALel~~k 496 (598)
--..-..||+...|...|.+=++-.|.
T Consensus 147 Y~ymEE~LgNi~gaRqiferW~~w~P~ 173 (677)
T KOG1915|consen 147 YIYMEEMLGNIAGARQIFERWMEWEPD 173 (677)
T ss_pred HHHHHHHhcccHHHHHHHHHHHcCCCc
Confidence 777778888888888888887777664
No 266
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=84.71 E-value=8.2 Score=43.81 Aligned_cols=88 Identities=14% Similarity=-0.045 Sum_probs=68.6
Q ss_pred CCHHHHHHHHHHHHHhCCCCch--------------------HHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCC
Q 007571 402 GNISGAASKYSEALALCPMRSK--------------------KERVVLYSNRAQCHLLMQQPLAAISDATRALCLHNPLN 461 (598)
Q Consensus 402 GdY~eAIe~YskALel~P~~~~--------------------~~~a~ly~NRA~cylKLgdyeeAI~D~~kALeLdP~~~ 461 (598)
.-..+|.+.|.+|++....... ....-+-..+|+|.-++|+.++||+.+...++..|..+
T Consensus 214 ~Ti~Eae~l~rqAvkAgE~~lg~s~~~~~~g~~~e~~~~Rdt~~~~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~ 293 (539)
T PF04184_consen 214 STIVEAEELLRQAVKAGEASLGKSQFLQHHGHFWEAWHRRDTNVLVYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLD 293 (539)
T ss_pred cCHHHHHHHHHHHHHHHHHhhchhhhhhcccchhhhhhccccchhhhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccc
Confidence 3478999999999987543200 11245566789999999999999999999998887521
Q ss_pred cCHHHHHHHHHHHHHhhcHHHHHHHHHHH
Q 007571 462 RHAKSLWRRAQAYDMLALAKESLLDAILF 490 (598)
Q Consensus 462 ~~~KAyyRRAqAy~~LGdy~EAl~d~~kA 490 (598)
+...++.+..+++.++.|.++..-+.+.
T Consensus 294 -~l~IrenLie~LLelq~Yad~q~lL~kY 321 (539)
T PF04184_consen 294 -NLNIRENLIEALLELQAYADVQALLAKY 321 (539)
T ss_pred -hhhHHHHHHHHHHhcCCHHHHHHHHHHh
Confidence 5678999999999999999996655553
No 267
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=84.34 E-value=1.4 Score=49.60 Aligned_cols=88 Identities=18% Similarity=0.237 Sum_probs=72.6
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-hC--------CCC----chHHHHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 007571 387 AALVVKLEGNSLFSAGNISGAASKYSEALA-LC--------PMR----SKKERVVLYSNRAQCHLLMQQPLAAISDATRA 453 (598)
Q Consensus 387 ~A~~lKeeGN~lfk~GdY~eAIe~YskALe-l~--------P~~----~~~~~a~ly~NRA~cylKLgdyeeAI~D~~kA 453 (598)
......+.|-.+|+.|.|..++.+|.+|++ .+ |.. ...-...+.+|.|..|+..|++-.|.+.+.+|
T Consensus 282 ~cif~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~qL~~g~~~~~~~tls~nks~eilYNcG~~~Lh~grPl~AfqCf~~a 361 (696)
T KOG2471|consen 282 SCIFNNNLGCIHYQLGCYQASSVLFLKALRNSCSQLRNGLKPAKTFTLSQNKSMEILYNCGLLYLHSGRPLLAFQCFQKA 361 (696)
T ss_pred hheeecCcceEeeehhhHHHHHHHHHHHHHHHHHHHhccCCCCcceehhcccchhhHHhhhHHHHhcCCcHHHHHHHHHH
Confidence 455567889999999999999999999996 22 111 11235788999999999999999999999999
Q ss_pred HHhCCCCCcCHHHHHHHHHHHHHh
Q 007571 454 LCLHNPLNRHAKSLWRRAQAYDML 477 (598)
Q Consensus 454 LeLdP~~~~~~KAyyRRAqAy~~L 477 (598)
...--. ++..|.|+|.|.++-
T Consensus 362 v~vfh~---nPrlWLRlAEcCima 382 (696)
T KOG2471|consen 362 VHVFHR---NPRLWLRLAECCIMA 382 (696)
T ss_pred HHHHhc---CcHHHHHHHHHHHHH
Confidence 998777 899999999987653
No 268
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=83.73 E-value=4.2 Score=43.71 Aligned_cols=72 Identities=14% Similarity=-0.006 Sum_probs=64.6
Q ss_pred HHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCcCHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHhccCCCC
Q 007571 426 RVVLYSNRAQCHLLMQQPLAAISDATRALCLHNPLNRHAKSLWRRAQAYDMLALAKESLLDAILFINECSQSNDP 500 (598)
Q Consensus 426 ~a~ly~NRA~cylKLgdyeeAI~D~~kALeLdP~~~~~~KAyyRRAqAy~~LGdy~EAl~d~~kALel~~k~~d~ 500 (598)
.+.+-.|.|.-..+.|+.++|...+..|+.++|+ ++.++.+.|+...+-.+.-+|-..|.+|+...|.++.+
T Consensus 115 EA~~Al~~A~~~~~~Gk~ekA~~lfeHAlalaP~---~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALtisP~nseA 186 (472)
T KOG3824|consen 115 EAILALKAAGRSRKDGKLEKAMTLFEHALALAPT---NPQILIEMGQFREMHNEIVEADQCYVKALTISPGNSEA 186 (472)
T ss_pred HHHHHHHHHHHHHhccchHHHHHHHHHHHhcCCC---CHHHHHHHhHHHHhhhhhHhhhhhhheeeeeCCCchHH
Confidence 3556667777788899999999999999999999 99999999999999999999999999999999976543
No 269
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=83.21 E-value=7.4 Score=40.54 Aligned_cols=84 Identities=13% Similarity=-0.059 Sum_probs=44.8
Q ss_pred HHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHHH-cCChHHHHHHHHHHHHhCCCCCcCHHHHHHHHHHHHHhhcHHH
Q 007571 404 ISGAASKYSEALALCPMRSKKERVVLYSNRAQCHLL-MQQPLAAISDATRALCLHNPLNRHAKSLWRRAQAYDMLALAKE 482 (598)
Q Consensus 404 Y~eAIe~YskALel~P~~~~~~~a~ly~NRA~cylK-LgdyeeAI~D~~kALeLdP~~~~~~KAyyRRAqAy~~LGdy~E 482 (598)
.+.|-..|.+|++..+.. ..+|..-|..-+. .++.+.|...++.+++.-|. +...+..-..-+..+++.+.
T Consensus 17 ~~~aR~vF~~a~~~~~~~-----~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~---~~~~~~~Y~~~l~~~~d~~~ 88 (280)
T PF05843_consen 17 IEAARKVFKRARKDKRCT-----YHVYVAYALMEYYCNKDPKRARKIFERGLKKFPS---DPDFWLEYLDFLIKLNDINN 88 (280)
T ss_dssp HHHHHHHHHHHHCCCCS------THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT----HHHHHHHHHHHHHTT-HHH
T ss_pred hHHHHHHHHHHHcCCCCC-----HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCC---CHHHHHHHHHHHHHhCcHHH
Confidence 455555566665333322 4455555555344 34444466666666666666 55555555555666666666
Q ss_pred HHHHHHHHHHHhc
Q 007571 483 SLLDAILFINECS 495 (598)
Q Consensus 483 Al~d~~kALel~~ 495 (598)
|...|++++...+
T Consensus 89 aR~lfer~i~~l~ 101 (280)
T PF05843_consen 89 ARALFERAISSLP 101 (280)
T ss_dssp HHHHHHHHCCTSS
T ss_pred HHHHHHHHHHhcC
Confidence 6666666665544
No 270
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=83.08 E-value=20 Score=43.20 Aligned_cols=91 Identities=14% Similarity=0.024 Sum_probs=76.7
Q ss_pred HHHcCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCcCHHHHHHHHHHHHHh
Q 007571 398 LFSAGNISGAASKYSEALALCPMRSKKERVVLYSNRAQCHLLMQQPLAAISDATRALCLHNPLNRHAKSLWRRAQAYDML 477 (598)
Q Consensus 398 lfk~GdY~eAIe~YskALel~P~~~~~~~a~ly~NRA~cylKLgdyeeAI~D~~kALeLdP~~~~~~KAyyRRAqAy~~L 477 (598)
....++|.+|+..-++.++..|+. ..+..--|..++++|++++|. -|-.++..-+.. ....+--.-.+|..+
T Consensus 19 ~ld~~qfkkal~~~~kllkk~Pn~-----~~a~vLkaLsl~r~gk~~ea~-~~Le~~~~~~~~--D~~tLq~l~~~y~d~ 90 (932)
T KOG2053|consen 19 LLDSSQFKKALAKLGKLLKKHPNA-----LYAKVLKALSLFRLGKGDEAL-KLLEALYGLKGT--DDLTLQFLQNVYRDL 90 (932)
T ss_pred HhhhHHHHHHHHHHHHHHHHCCCc-----HHHHHHHHHHHHHhcCchhHH-HHHhhhccCCCC--chHHHHHHHHHHHHH
Confidence 456788999999999999999997 677777899999999999999 555666554431 566777788899999
Q ss_pred hcHHHHHHHHHHHHHHhcc
Q 007571 478 ALAKESLLDAILFINECSQ 496 (598)
Q Consensus 478 Gdy~EAl~d~~kALel~~k 496 (598)
+++++|...|+++++..|+
T Consensus 91 ~~~d~~~~~Ye~~~~~~P~ 109 (932)
T KOG2053|consen 91 GKLDEAVHLYERANQKYPS 109 (932)
T ss_pred hhhhHHHHHHHHHHhhCCc
Confidence 9999999999999999886
No 271
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=83.07 E-value=8.8 Score=33.55 Aligned_cols=50 Identities=14% Similarity=0.064 Sum_probs=41.7
Q ss_pred HHHHHHHHHHHhCCCCCcCHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHhccC
Q 007571 445 AAISDATRALCLHNPLNRHAKSLWRRAQAYDMLALAKESLLDAILFINECSQS 497 (598)
Q Consensus 445 eAI~D~~kALeLdP~~~~~~KAyyRRAqAy~~LGdy~EAl~d~~kALel~~k~ 497 (598)
..+....++++-+|+ +..+.|.+|.++...|++++|+.-+...++..+..
T Consensus 6 ~~~~al~~~~a~~P~---D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~ 55 (90)
T PF14561_consen 6 PDIAALEAALAANPD---DLDARYALADALLAAGDYEEALDQLLELVRRDRDY 55 (90)
T ss_dssp HHHHHHHHHHHHSTT----HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTC
T ss_pred ccHHHHHHHHHcCCC---CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccc
Confidence 346778899999999 99999999999999999999999998888876653
No 272
>PF10373 EST1_DNA_bind: Est1 DNA/RNA binding domain; InterPro: IPR018834 Est1 is a protein which recruits or activates telomerase at the site of polymerisation [, ]. This is the DNA/RNA binding domain of EST1 []. ; PDB: 1YA0_B.
Probab=82.80 E-value=4.5 Score=40.88 Aligned_cols=62 Identities=19% Similarity=0.192 Sum_probs=52.0
Q ss_pred HHHHHHHHHHhCCCCchHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCcCHHHHHHHHHHHHH
Q 007571 407 AASKYSEALALCPMRSKKERVVLYSNRAQCHLLMQQPLAAISDATRALCLHNPLNRHAKSLWRRAQAYDM 476 (598)
Q Consensus 407 AIe~YskALel~P~~~~~~~a~ly~NRA~cylKLgdyeeAI~D~~kALeLdP~~~~~~KAyyRRAqAy~~ 476 (598)
|..+|.+|+.+.|.. ...|+.+|..+...++.-.|+-.|.+++....+ ++.|.-++...+..
T Consensus 1 A~~~Y~~A~~l~P~~-----G~p~nQLAvl~~~~~~~l~avy~y~Rsl~~~~P---f~~A~~NL~~lf~~ 62 (278)
T PF10373_consen 1 AERYYRKAIRLLPSN-----GNPYNQLAVLASYQGDDLDAVYYYIRSLAVRIP---FPSARENLQKLFEK 62 (278)
T ss_dssp HHHHHHHHHHH-TTB-----SHHHHHHHHHHHHTT-HHHHHHHHHHHHSSSB-----HHHHHHHHHHHHH
T ss_pred CHHHHHHHHHhCCCC-----CCcccchhhhhccccchHHHHHHHHHHHhcCCC---cHHHHHHHHHHHHH
Confidence 788999999999999 899999999999999999999999999987666 77777777777666
No 273
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=82.33 E-value=12 Score=42.61 Aligned_cols=62 Identities=11% Similarity=0.054 Sum_probs=52.5
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 007571 389 LVVKLEGNSLFSAGNISGAASKYSEALALCPMRSKKERVVLYSNRAQCHLLMQQPLAAISDATRA 453 (598)
Q Consensus 389 ~~lKeeGN~lfk~GdY~eAIe~YskALel~P~~~~~~~a~ly~NRA~cylKLgdyeeAI~D~~kA 453 (598)
-.....|..+.+.|+.++||+.|...++..|.. ....++.|+..|++.++.|.++-....+-
T Consensus 260 y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~---~~l~IrenLie~LLelq~Yad~q~lL~kY 321 (539)
T PF04184_consen 260 YAKRRLAMCARKLGRLREAIKMFRDLLKEFPNL---DNLNIRENLIEALLELQAYADVQALLAKY 321 (539)
T ss_pred hhHHHHHHHHHHhCChHHHHHHHHHHHhhCCcc---chhhHHHHHHHHHHhcCCHHHHHHHHHHh
Confidence 344567888899999999999999999988863 24679999999999999999988777764
No 274
>COG0545 FkpA FKBP-type peptidyl-prolyl cis-trans isomerases 1 [Posttranslational modification, protein turnover, chaperones]
Probab=81.93 E-value=0.14 Score=51.41 Aligned_cols=40 Identities=18% Similarity=0.069 Sum_probs=36.1
Q ss_pred cCCccceehhhccccccccCCCC--CCCCccHHHHHHHHHHH
Q 007571 327 HKKLGDSIVNVLQDCIQLQGTVR--SSPSNRSKEQIEELLNS 366 (598)
Q Consensus 327 ~~k~GE~~~~~L~pdy~~g~~g~--~ip~~~tl~~~~ELl~~ 366 (598)
.|++|++..++|.|+++||..|. .|||++++.|.++|+++
T Consensus 163 ~M~vG~k~~l~IP~~laYG~~g~~g~Ippns~LvFeVeLl~v 204 (205)
T COG0545 163 GMKVGGKRKLTIPPELAYGERGVPGVIPPNSTLVFEVELLDV 204 (205)
T ss_pred hCCCCceEEEEeCchhccCcCCCCCCCCCCCeEEEEEEEEec
Confidence 59999999999999999999995 59999999999887753
No 275
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=81.51 E-value=22 Score=36.99 Aligned_cols=98 Identities=7% Similarity=-0.120 Sum_probs=74.6
Q ss_pred HHHHHHHHHH-cCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCcCH---HH
Q 007571 391 VKLEGNSLFS-AGNISGAASKYSEALALCPMRSKKERVVLYSNRAQCHLLMQQPLAAISDATRALCLHNPLNRHA---KS 466 (598)
Q Consensus 391 lKeeGN~lfk-~GdY~eAIe~YskALel~P~~~~~~~a~ly~NRA~cylKLgdyeeAI~D~~kALeLdP~~~~~~---KA 466 (598)
+..-|.--+. .++.+.|...|+.+++..|.+ ..++..-..-++++++.+.|...+++++..-|. .. ..
T Consensus 38 y~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~-----~~~~~~Y~~~l~~~~d~~~aR~lfer~i~~l~~---~~~~~~i 109 (280)
T PF05843_consen 38 YVAYALMEYYCNKDPKRARKIFERGLKKFPSD-----PDFWLEYLDFLIKLNDINNARALFERAISSLPK---EKQSKKI 109 (280)
T ss_dssp HHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT------HHHHHHHHHHHHHTT-HHHHHHHHHHHCCTSSC---HHHCHHH
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCC-----HHHHHHHHHHHHHhCcHHHHHHHHHHHHHhcCc---hhHHHHH
Confidence 4455555566 677788999999999999998 777777778888999999999999999988666 33 34
Q ss_pred HHHHHHHHHHhhcHHHHHHHHHHHHHHhcc
Q 007571 467 LWRRAQAYDMLALAKESLLDAILFINECSQ 496 (598)
Q Consensus 467 yyRRAqAy~~LGdy~EAl~d~~kALel~~k 496 (598)
|-+...--...|+.+......+++.+.++.
T Consensus 110 w~~~i~fE~~~Gdl~~v~~v~~R~~~~~~~ 139 (280)
T PF05843_consen 110 WKKFIEFESKYGDLESVRKVEKRAEELFPE 139 (280)
T ss_dssp HHHHHHHHHHHS-HHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHhhh
Confidence 555566667778999888888888888876
No 276
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=81.14 E-value=2 Score=44.34 Aligned_cols=59 Identities=12% Similarity=-0.073 Sum_probs=54.6
Q ss_pred HHHHcCChHHHHHHHHHHHHhCCCCCcCHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHhccC
Q 007571 436 CHLLMQQPLAAISDATRALCLHNPLNRHAKSLWRRAQAYDMLALAKESLLDAILFINECSQS 497 (598)
Q Consensus 436 cylKLgdyeeAI~D~~kALeLdP~~~~~~KAyyRRAqAy~~LGdy~EAl~d~~kALel~~k~ 497 (598)
...+-++.+.|.+.+.+|+++-|. +...++|.|.-....|+++.|.+.|.+.+++.|.+
T Consensus 4 ~~~~~~D~~aaaely~qal~lap~---w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~D 62 (287)
T COG4976 4 MLAESGDAEAAAELYNQALELAPE---WAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPED 62 (287)
T ss_pred hhcccCChHHHHHHHHHHhhcCch---hhhhhhhcchhhhhcccHHHHHHHHHHHHcCCccc
Confidence 445678999999999999999999 99999999999999999999999999999998764
No 277
>PRK13184 pknD serine/threonine-protein kinase; Reviewed
Probab=80.89 E-value=16 Score=44.62 Aligned_cols=97 Identities=16% Similarity=0.041 Sum_probs=72.2
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHHHc----C---ChHHHHHHHHHHHHhCCCCCcCHHH
Q 007571 394 EGNSLFSAGNISGAASKYSEALALCPMRSKKERVVLYSNRAQCHLLM----Q---QPLAAISDATRALCLHNPLNRHAKS 466 (598)
Q Consensus 394 eGN~lfk~GdY~eAIe~YskALel~P~~~~~~~a~ly~NRA~cylKL----g---dyeeAI~D~~kALeLdP~~~~~~KA 466 (598)
-.+++...+.|++|+..|.+.-.-.|.. ++-..+....|.+.+.. + .+.+|+.-+++. .-.|. .+--
T Consensus 481 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~---~~~~ 554 (932)
T PRK13184 481 VPDAFLAEKLYDQALIFYRRIRESFPGR--KEGYEAQFRLGITLLEKASEQGDPRDFTQALSEFSYL-HGGVG---APLE 554 (932)
T ss_pred CcHHHHhhHHHHHHHHHHHHHhhcCCCc--ccchHHHHHhhHHHHHHHHhcCChHHHHHHHHHHHHh-cCCCC---CchH
Confidence 3455677888999999999999888874 33345555566665543 2 366666666543 23355 6778
Q ss_pred HHHHHHHHHHhhcHHHHHHHHHHHHHHhcc
Q 007571 467 LWRRAQAYDMLALAKESLLDAILFINECSQ 496 (598)
Q Consensus 467 yyRRAqAy~~LGdy~EAl~d~~kALel~~k 496 (598)
|.-+|.+|..+|+|+|-++.|..|++-.++
T Consensus 555 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 584 (932)
T PRK13184 555 YLGKALVYQRLGEYNEEIKSLLLALKRYSQ 584 (932)
T ss_pred HHhHHHHHHHhhhHHHHHHHHHHHHHhcCC
Confidence 889999999999999999999999999987
No 278
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=80.77 E-value=2.2 Score=36.75 Aligned_cols=94 Identities=22% Similarity=0.192 Sum_probs=69.7
Q ss_pred chhhhhHhHhhcCC-CCcccccccHHHHHHHHHHhhcCCccccccCCccchhhhhhhhhhcccccHHHHHHHHHhcCCch
Q 007571 30 LPISGLWNTAMAHP-NDPEFIELGIFECMAALIWKGLKNRRWLSHDQNIYIPYYAAHIIGSYTMNMEEFAESAVHAGVIP 108 (598)
Q Consensus 30 ~~~~~~~~~~~~~p-~~~~~~~lg~~~~~~~l~~~~~~~~~~~~~~~~~~~~yy~ah~~gsy~~~~~~~~~~av~~~~~~ 108 (598)
-++..|+|++-..| .-..|.+.|+++=+..++. ++|.-+=.+|+=+++..+=+...-.+..++.|+||
T Consensus 26 ~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~-----------~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~l~ 94 (120)
T cd00020 26 EAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLK-----------SEDEEVVKAALWALRNLAAGPEDNKLIVLEAGGVP 94 (120)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHh-----------CCCHHHHHHHHHHHHHHccCcHHHHHHHHHCCChH
Confidence 47788888887633 3344556687777777764 24555557888889999888888999999999999
Q ss_pred HHHHHhcccchhhHHHHHHHHhhcccc
Q 007571 109 PLVELLRGRLTWVEQRVAVRALGHLAT 135 (598)
Q Consensus 109 ~l~~~~~~~~~wve~r~~~r~l~h~a~ 135 (598)
.|+++|... +.=-++.|.-+|++|++
T Consensus 95 ~l~~~l~~~-~~~~~~~a~~~l~~l~~ 120 (120)
T cd00020 95 KLVNLLDSS-NEDIQKNATGALSNLAS 120 (120)
T ss_pred HHHHHHhcC-CHHHHHHHHHHHHHhhC
Confidence 999999876 33345678888888764
No 279
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=79.87 E-value=29 Score=33.32 Aligned_cols=86 Identities=12% Similarity=-0.047 Sum_probs=58.4
Q ss_pred HHHHHHHHHHHHHcC---ChHHHHHHHHHHHH-hCCCCCcCHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHhccCCCCch
Q 007571 427 VVLYSNRAQCHLLMQ---QPLAAISDATRALC-LHNPLNRHAKSLWRRAQAYDMLALAKESLLDAILFINECSQSNDPDL 502 (598)
Q Consensus 427 a~ly~NRA~cylKLg---dyeeAI~D~~kALe-LdP~~~~~~KAyyRRAqAy~~LGdy~EAl~d~~kALel~~k~~d~~~ 502 (598)
....+|.|-|+.+-. +..+.|...+..++ -.|.. ...-+|.+|..++.+++|+.|+......++..|++.
T Consensus 32 ~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~--rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e~~n~---- 105 (149)
T KOG3364|consen 32 KQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPER--RRECLYYLAVGHYRLKEYSKSLRYVDALLETEPNNR---- 105 (149)
T ss_pred HHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCccc--chhhhhhhHHHHHHHhhHHHHHHHHHHHHhhCCCcH----
Confidence 455667777776654 45667777777776 33432 456778889999999999999999888888876522
Q ss_pred hhccCChHHHHHHHHHHHHHHH
Q 007571 503 SLRQNKVPDYAERLVKKQMRAA 524 (598)
Q Consensus 503 ~~r~~Ki~~~ierlL~Kqk~a~ 524 (598)
....+++.+.+.+...
T Consensus 106 ------Qa~~Lk~~ied~itke 121 (149)
T KOG3364|consen 106 ------QALELKETIEDKITKE 121 (149)
T ss_pred ------HHHHHHHHHHHHHhhc
Confidence 3335555665555444
No 280
>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].
Probab=79.65 E-value=2.7 Score=31.31 Aligned_cols=30 Identities=3% Similarity=-0.299 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHhhcHHHHHHHHHHHHHHhc
Q 007571 466 SLWRRAQAYDMLALAKESLLDAILFINECS 495 (598)
Q Consensus 466 AyyRRAqAy~~LGdy~EAl~d~~kALel~~ 495 (598)
.|.++|.+-+..++|++|+.||.+++++..
T Consensus 3 v~~~Lgeisle~e~f~qA~~D~~~aL~i~~ 32 (38)
T PF10516_consen 3 VYDLLGEISLENENFEQAIEDYEKALEIQE 32 (38)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHHHH
Confidence 455566666666666666666666665543
No 281
>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].
Probab=79.19 E-value=3.6 Score=30.64 Aligned_cols=29 Identities=24% Similarity=0.179 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHh
Q 007571 428 VLYSNRAQCHLLMQQPLAAISDATRALCL 456 (598)
Q Consensus 428 ~ly~NRA~cylKLgdyeeAI~D~~kALeL 456 (598)
.+|.-+|.+-+..++|++|+.|+.++|++
T Consensus 2 dv~~~Lgeisle~e~f~qA~~D~~~aL~i 30 (38)
T PF10516_consen 2 DVYDLLGEISLENENFEQAIEDYEKALEI 30 (38)
T ss_pred cHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 46888999999999999999999999875
No 282
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=79.07 E-value=7.6 Score=37.18 Aligned_cols=58 Identities=14% Similarity=0.094 Sum_probs=45.8
Q ss_pred CHHHHHHHHHHHHH-hCCCCchHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCcCHHHH
Q 007571 403 NISGAASKYSEALA-LCPMRSKKERVVLYSNRAQCHLLMQQPLAAISDATRALCLHNPLNRHAKSL 467 (598)
Q Consensus 403 dY~eAIe~YskALe-l~P~~~~~~~a~ly~NRA~cylKLgdyeeAI~D~~kALeLdP~~~~~~KAy 467 (598)
+.++-|..++..++ -.|.. +-.+.+-+|..|.++++|+.++..++..|+.+|+ |..|.
T Consensus 50 dv~~GI~iLe~l~~~~~~~~----rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e~~---n~Qa~ 108 (149)
T KOG3364|consen 50 DVQEGIVILEDLLKSAHPER----RRECLYYLAVGHYRLKEYSKSLRYVDALLETEPN---NRQAL 108 (149)
T ss_pred HHHHhHHHHHHHhhhcCccc----chhhhhhhHHHHHHHhhHHHHHHHHHHHHhhCCC---cHHHH
Confidence 46778888888886 33332 3455555999999999999999999999999999 76553
No 283
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=79.07 E-value=13 Score=39.10 Aligned_cols=93 Identities=15% Similarity=0.049 Sum_probs=43.0
Q ss_pred HHHcCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCcC---HHHHHHHHHHH
Q 007571 398 LFSAGNISGAASKYSEALALCPMRSKKERVVLYSNRAQCHLLMQQPLAAISDATRALCLHNPLNRH---AKSLWRRAQAY 474 (598)
Q Consensus 398 lfk~GdY~eAIe~YskALel~P~~~~~~~a~ly~NRA~cylKLgdyeeAI~D~~kALeLdP~~~~~---~KAyyRRAqAy 474 (598)
+-+...+.++..+|++|..+.-.....+.+..-.-+|.=.++.-++++|++.|++++.+=....+. ...+-..+..|
T Consensus 81 ake~~klsEvvdl~eKAs~lY~E~GspdtAAmaleKAak~lenv~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr~l 160 (308)
T KOG1585|consen 81 AKELSKLSEVVDLYEKASELYVECGSPDTAAMALEKAAKALENVKPDDALQLYQRALAVVEEDDRDQMAFELYGKCSRVL 160 (308)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhHh
Confidence 334445555556666665543222222224444445555555556666666666655442210001 12222234455
Q ss_pred HHhhcHHHHHHHHHHH
Q 007571 475 DMLALAKESLLDAILF 490 (598)
Q Consensus 475 ~~LGdy~EAl~d~~kA 490 (598)
..+.+|.+|-..+.+-
T Consensus 161 Vrl~kf~Eaa~a~lKe 176 (308)
T KOG1585|consen 161 VRLEKFTEAATAFLKE 176 (308)
T ss_pred hhhHHhhHHHHHHHHh
Confidence 5555565555554443
No 284
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=78.42 E-value=15 Score=38.19 Aligned_cols=96 Identities=18% Similarity=0.033 Sum_probs=71.8
Q ss_pred HHHcCCHHHHHHHHHHHHHhC---CCCchHHHHHHHHHHHHHHHHcC-ChHHHHHHHHHHHHh----CCCC-------Cc
Q 007571 398 LFSAGNISGAASKYSEALALC---PMRSKKERVVLYSNRAQCHLLMQ-QPLAAISDATRALCL----HNPL-------NR 462 (598)
Q Consensus 398 lfk~GdY~eAIe~YskALel~---P~~~~~~~a~ly~NRA~cylKLg-dyeeAI~D~~kALeL----dP~~-------~~ 462 (598)
..++|+++.|..+|+|+=... +.......+..++|.|...++.+ +|+.|+...++|+++ .+.. .+
T Consensus 3 A~~~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~el 82 (278)
T PF08631_consen 3 AWKQGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSEL 82 (278)
T ss_pred chhhCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHH
Confidence 357899999999999997765 22234678999999999999999 999999999999887 2211 12
Q ss_pred CHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHh
Q 007571 463 HAKSLWRRAQAYDMLALAKESLLDAILFINEC 494 (598)
Q Consensus 463 ~~KAyyRRAqAy~~LGdy~EAl~d~~kALel~ 494 (598)
..+.+.-++.+|+..+.++...+ ...+++..
T Consensus 83 r~~iL~~La~~~l~~~~~~~~~k-a~~~l~~l 113 (278)
T PF08631_consen 83 RLSILRLLANAYLEWDTYESVEK-ALNALRLL 113 (278)
T ss_pred HHHHHHHHHHHHHcCCChHHHHH-HHHHHHHH
Confidence 35677778999999888764433 44445444
No 285
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=78.28 E-value=15 Score=38.81 Aligned_cols=89 Identities=10% Similarity=-0.074 Sum_probs=61.2
Q ss_pred HHcCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHHHc----CChHHHHHHHHHHHHhCCCCCcCHHHHHHHHHHH
Q 007571 399 FSAGNISGAASKYSEALALCPMRSKKERVVLYSNRAQCHLLM----QQPLAAISDATRALCLHNPLNRHAKSLWRRAQAY 474 (598)
Q Consensus 399 fk~GdY~eAIe~YskALel~P~~~~~~~a~ly~NRA~cylKL----gdyeeAI~D~~kALeLdP~~~~~~KAyyRRAqAy 474 (598)
.+..+++.|.....+..+++.+ ..++.+|.++.++ +++.+|.-.|...-+.-|. .+..+.-.|.++
T Consensus 148 lk~~r~d~A~~~lk~mq~ided-------~tLtQLA~awv~la~ggek~qdAfyifeE~s~k~~~---T~~llnG~Av~~ 217 (299)
T KOG3081|consen 148 LKMHRFDLAEKELKKMQQIDED-------ATLTQLAQAWVKLATGGEKIQDAFYIFEELSEKTPP---TPLLLNGQAVCH 217 (299)
T ss_pred HHHHHHHHHHHHHHHHHccchH-------HHHHHHHHHHHHHhccchhhhhHHHHHHHHhcccCC---ChHHHccHHHHH
Confidence 3344444444444444444332 3344466666553 3578888888887775566 788999999999
Q ss_pred HHhhcHHHHHHHHHHHHHHhccC
Q 007571 475 DMLALAKESLLDAILFINECSQS 497 (598)
Q Consensus 475 ~~LGdy~EAl~d~~kALel~~k~ 497 (598)
+.+|+|++|...++.+|...+++
T Consensus 218 l~~~~~eeAe~lL~eaL~kd~~d 240 (299)
T KOG3081|consen 218 LQLGRYEEAESLLEEALDKDAKD 240 (299)
T ss_pred HHhcCHHHHHHHHHHHHhccCCC
Confidence 99999999999999999886653
No 286
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=77.98 E-value=60 Score=37.22 Aligned_cols=84 Identities=10% Similarity=-0.140 Sum_probs=71.2
Q ss_pred HHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCcCHHHHHHHHHHHHHhhc-HHHH
Q 007571 405 SGAASKYSEALALCPMRSKKERVVLYSNRAQCHLLMQQPLAAISDATRALCLHNPLNRHAKSLWRRAQAYDMLAL-AKES 483 (598)
Q Consensus 405 ~eAIe~YskALel~P~~~~~~~a~ly~NRA~cylKLgdyeeAI~D~~kALeLdP~~~~~~KAyyRRAqAy~~LGd-y~EA 483 (598)
..-...|..|+...+.+ ..+|++-..-..+-+.|.+--..|.++|..+|+ ++..+..-|.=.+..+. .+.|
T Consensus 88 ~rIv~lyr~at~rf~~D-----~~lW~~yi~f~kk~~~~~~v~ki~~~~l~~Hp~---~~dLWI~aA~wefe~n~ni~sa 159 (568)
T KOG2396|consen 88 NRIVFLYRRATNRFNGD-----VKLWLSYIAFCKKKKTYGEVKKIFAAMLAKHPN---NPDLWIYAAKWEFEINLNIESA 159 (568)
T ss_pred HHHHHHHHHHHHhcCCC-----HHHHHHHHHHHHHhcchhHHHHHHHHHHHhCCC---CchhHHhhhhhHHhhccchHHH
Confidence 44467799999988887 888887765555555699999999999999999 99999999988888877 8999
Q ss_pred HHHHHHHHHHhcc
Q 007571 484 LLDAILFINECSQ 496 (598)
Q Consensus 484 l~d~~kALel~~k 496 (598)
..-|.++|+.+|+
T Consensus 160 RalflrgLR~npd 172 (568)
T KOG2396|consen 160 RALFLRGLRFNPD 172 (568)
T ss_pred HHHHHHHhhcCCC
Confidence 9999999999887
No 287
>cd02682 MIT_AAA_Arch MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in mostly archaebacterial AAA-ATPases. The molecular function of the MIT domain is unclear.
Probab=77.90 E-value=14 Score=31.61 Aligned_cols=32 Identities=19% Similarity=0.244 Sum_probs=27.8
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 007571 386 AAALVVKLEGNSLFSAGNISGAASKYSEALAL 417 (598)
Q Consensus 386 ~~A~~lKeeGN~lfk~GdY~eAIe~YskALel 417 (598)
..|..+-.++-.+=+.|+|.+||.+|++||++
T Consensus 4 ~~A~~~a~~AVe~D~~gr~~eAi~~Y~~aIe~ 35 (75)
T cd02682 4 EMARKYAINAVKAEKEGNAEDAITNYKKAIEV 35 (75)
T ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Confidence 45777888888899999999999999999875
No 288
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=77.86 E-value=26 Score=34.26 Aligned_cols=74 Identities=7% Similarity=-0.155 Sum_probs=61.6
Q ss_pred hHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCcCHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHhcc
Q 007571 423 KKERVVLYSNRAQCHLLMQQPLAAISDATRALCLHNPLNRHAKSLWRRAQAYDMLALAKESLLDAILFINECSQ 496 (598)
Q Consensus 423 ~~~~a~ly~NRA~cylKLgdyeeAI~D~~kALeLdP~~~~~~KAyyRRAqAy~~LGdy~EAl~d~~kALel~~k 496 (598)
++..-.++..+|.-|.+.|++++|++.|.++.+...........+++.-.+....+++......+.++-.....
T Consensus 32 kesir~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~ 105 (177)
T PF10602_consen 32 KESIRMALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEK 105 (177)
T ss_pred hHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhc
Confidence 34557889999999999999999999999988765442224578888899999999999999999999888765
No 289
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=77.42 E-value=7.6 Score=44.89 Aligned_cols=91 Identities=14% Similarity=-0.010 Sum_probs=77.3
Q ss_pred HcCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCcCHHHHHHHHHHHHHhhc
Q 007571 400 SAGNISGAASKYSEALALCPMRSKKERVVLYSNRAQCHLLMQQPLAAISDATRALCLHNPLNRHAKSLWRRAQAYDMLAL 479 (598)
Q Consensus 400 k~GdY~eAIe~YskALel~P~~~~~~~a~ly~NRA~cylKLgdyeeAI~D~~kALeLdP~~~~~~KAyyRRAqAy~~LGd 479 (598)
-+|+..+|+.+|..|+-..|... .-.++.-+|..+.++|.-.+|--....|+.--|. ...-+|-.|+++.++++
T Consensus 225 ~~G~~~~A~~Ca~~a~hf~~~h~---kdi~lLSlaTiL~RaG~sadA~iILhAA~~dA~~---~t~n~y~l~~i~aml~~ 298 (886)
T KOG4507|consen 225 IKGEPYQAVECAMRALHFSSRHN---KDIALLSLATVLHRAGFSADAAVILHAALDDADF---FTSNYYTLGNIYAMLGE 298 (886)
T ss_pred HcCChhhhhHHHHHHhhhCCccc---ccchhhhHHHHHHHcccccchhheeehhccCCcc---ccccceeHHHHHHHHhh
Confidence 47899999999999999987642 2456667999999999999998888889888887 56669999999999999
Q ss_pred HHHHHHHHHHHHHHhcc
Q 007571 480 AKESLLDAILFINECSQ 496 (598)
Q Consensus 480 y~EAl~d~~kALel~~k 496 (598)
|...+..|..+.+.-|.
T Consensus 299 ~N~S~~~ydha~k~~p~ 315 (886)
T KOG4507|consen 299 YNHSVLCYDHALQARPG 315 (886)
T ss_pred hhhhhhhhhhhhccCcc
Confidence 99999999988877653
No 290
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=75.62 E-value=13 Score=39.94 Aligned_cols=65 Identities=17% Similarity=0.061 Sum_probs=56.3
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCcCHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHh
Q 007571 427 VVLYSNRAQCHLLMQQPLAAISDATRALCLHNPLNRHAKSLWRRAQAYDMLALAKESLLDAILFINEC 494 (598)
Q Consensus 427 a~ly~NRA~cylKLgdyeeAI~D~~kALeLdP~~~~~~KAyyRRAqAy~~LGdy~EAl~d~~kALel~ 494 (598)
..++.-.|..|++.|.|.+|++.+.+++.++|- +...+.-+-+.|..+|+--.|+..|.+.-+..
T Consensus 279 ~kllgkva~~yle~g~~neAi~l~qr~ltldpL---~e~~nk~lm~~la~~gD~is~~khyerya~vl 343 (361)
T COG3947 279 MKLLGKVARAYLEAGKPNEAIQLHQRALTLDPL---SEQDNKGLMASLATLGDEISAIKHYERYAEVL 343 (361)
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHhhcChh---hhHHHHHHHHHHHHhccchhhhhHHHHHHHHH
Confidence 455566788999999999999999999999998 88888889999999999988988887765553
No 291
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=75.31 E-value=48 Score=34.40 Aligned_cols=110 Identities=17% Similarity=-0.018 Sum_probs=83.0
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC------
Q 007571 386 AAALVVKLEGNSLFSAGNISGAASKYSEALALCPMRSKKERVVLYSNRAQCHLLMQQPLAAISDATRALCLHNP------ 459 (598)
Q Consensus 386 ~~A~~lKeeGN~lfk~GdY~eAIe~YskALel~P~~~~~~~a~ly~NRA~cylKLgdyeeAI~D~~kALeLdP~------ 459 (598)
..+..+..-+...-+.|+|+.|.....++....+.. ....+.+..-.|......|+..+|+......+.....
T Consensus 144 ~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~-~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~~~~~~~~~~ 222 (352)
T PF02259_consen 144 ELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSS-ESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKCRLSKNIDSI 222 (352)
T ss_pred HHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcc-cCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhccccc
Confidence 356677888888999999999999999999876432 1113566667888888999999999988888771110
Q ss_pred -------------------------CCcCHHHHHHHHHHHHHh------hcHHHHHHHHHHHHHHhcc
Q 007571 460 -------------------------LNRHAKSLWRRAQAYDML------ALAKESLLDAILFINECSQ 496 (598)
Q Consensus 460 -------------------------~~~~~KAyyRRAqAy~~L------Gdy~EAl~d~~kALel~~k 496 (598)
.....++++.+|.-...+ +.+++++..|.++++..+.
T Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~~~~ 290 (352)
T PF02259_consen 223 SNAELKSGLLESLEVISSTNLDKESKELKAKAFLLLAKWLDELYSKLSSESSDEILKYYKEATKLDPS 290 (352)
T ss_pred cHHHHhhccccccccccccchhhhhHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHhChh
Confidence 011357788888877777 8889999999999999875
No 292
>COG2912 Uncharacterized conserved protein [Function unknown]
Probab=75.03 E-value=12 Score=39.39 Aligned_cols=74 Identities=15% Similarity=-0.027 Sum_probs=61.8
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCcCHHHHHHH
Q 007571 391 VKLEGNSLFSAGNISGAASKYSEALALCPMRSKKERVVLYSNRAQCHLLMQQPLAAISDATRALCLHNPLNRHAKSLWRR 470 (598)
Q Consensus 391 lKeeGN~lfk~GdY~eAIe~YskALel~P~~~~~~~a~ly~NRA~cylKLgdyeeAI~D~~kALeLdP~~~~~~KAyyRR 470 (598)
+...=+.+...++++.|...-.+.+.++|.+ +.-..-||.+|..+|-+.-|++|.+..++.-|+ .+.+-.-+
T Consensus 184 l~~lk~~~~~e~~~~~al~~~~r~l~l~P~d-----p~eirDrGliY~ql~c~~vAl~dl~~~~~~~P~---~~~a~~ir 255 (269)
T COG2912 184 LRNLKAALLRELQWELALRVAERLLDLNPED-----PYEIRDRGLIYAQLGCYHVALEDLSYFVEHCPD---DPIAEMIR 255 (269)
T ss_pred HHHHHHHHHHhhchHHHHHHHHHHHhhCCCC-----hhhccCcHHHHHhcCCchhhHHHHHHHHHhCCC---chHHHHHH
Confidence 3344456788999999999999999999998 666778999999999999999999999999999 55554444
Q ss_pred HH
Q 007571 471 AQ 472 (598)
Q Consensus 471 Aq 472 (598)
++
T Consensus 256 ~~ 257 (269)
T COG2912 256 AQ 257 (269)
T ss_pred HH
Confidence 43
No 293
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=73.87 E-value=6.3 Score=43.71 Aligned_cols=66 Identities=14% Similarity=0.081 Sum_probs=48.0
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHhCCCC------CcCHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHhcc
Q 007571 430 YSNRAQCHLLMQQPLAAISDATRALCLHNPL------NRHAKSLWRRAQAYDMLALAKESLLDAILFINECSQ 496 (598)
Q Consensus 430 y~NRA~cylKLgdyeeAI~D~~kALeLdP~~------~~~~KAyyRRAqAy~~LGdy~EAl~d~~kALel~~k 496 (598)
..-+..+|..+|+|..|++..+- |+++... .-++..+|..|.||+++++|.+|++.|...+-...+
T Consensus 125 ligLlRvh~LLGDY~~Alk~l~~-idl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL~yi~r 196 (404)
T PF10255_consen 125 LIGLLRVHCLLGDYYQALKVLEN-IDLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQILLYIQR 196 (404)
T ss_pred HHHHHHHHHhccCHHHHHHHhhc-cCcccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33455677789999999986532 2332210 016788999999999999999999999998877655
No 294
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=73.63 E-value=19 Score=36.40 Aligned_cols=86 Identities=13% Similarity=-0.030 Sum_probs=58.8
Q ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-chHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCcC
Q 007571 385 QAAALVVKLEGNSLFSAGNISGAASKYSEALALCPMR-SKKERVVLYSNRAQCHLLMQQPLAAISDATRALCLHNPLNRH 463 (598)
Q Consensus 385 ~~~A~~lKeeGN~lfk~GdY~eAIe~YskALel~P~~-~~~~~a~ly~NRA~cylKLgdyeeAI~D~~kALeLdP~~~~~ 463 (598)
++.|--+...|+....+.=+..|++.|.+|++..... .......+.+-.|..+.++|++++|+..+.+++...-.. .
T Consensus 122 LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~l~YLigeL~rrlg~~~eA~~~fs~vi~~~~~s--~ 199 (214)
T PF09986_consen 122 LRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEATLLYLIGELNRRLGNYDEAKRWFSRVIGSKKAS--K 199 (214)
T ss_pred HHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHcCCCCC--C
Confidence 3445555566665555666789999999999875441 122234566669999999999999999999999775441 1
Q ss_pred HHHHHHHHH
Q 007571 464 AKSLWRRAQ 472 (598)
Q Consensus 464 ~KAyyRRAq 472 (598)
...+..+|+
T Consensus 200 ~~~l~~~AR 208 (214)
T PF09986_consen 200 EPKLKDMAR 208 (214)
T ss_pred cHHHHHHHH
Confidence 235555554
No 295
>PF04212 MIT: MIT (microtubule interacting and transport) domain; InterPro: IPR007330 The MIT domain is found in vacuolar sorting proteins, spastin (probable ATPase involved in the assembly or function of nuclear protein complexes), and a sorting nexin, which may play a role in intracellular trafficking.; PDB: 2DL1_A 2JQK_A 1WR0_A 2CPT_A 2JQH_A 2V6Y_A 2JQ9_A 2K3W_A 1YXR_A 3EAB_E ....
Probab=72.85 E-value=9.1 Score=31.33 Aligned_cols=32 Identities=25% Similarity=0.230 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 007571 386 AAALVVKLEGNSLFSAGNISGAASKYSEALAL 417 (598)
Q Consensus 386 ~~A~~lKeeGN~lfk~GdY~eAIe~YskALel 417 (598)
..|..+..+|-.+=+.|+|++|+.+|++|++.
T Consensus 3 ~~A~~~~~~Av~~D~~g~~~~A~~~Y~~ai~~ 34 (69)
T PF04212_consen 3 DKAIELIKKAVEADEAGNYEEALELYKEAIEY 34 (69)
T ss_dssp HHHHHHHHHHHHHHHTTSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 45677778888888899999999999998875
No 296
>TIGR03516 ppisom_GldI peptidyl-prolyl isomerase, gliding motility-associated. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldI is a FKBP-type peptidyl-prolyl cis-trans isomerase (pfam00254) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockout of this gene abolishes the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. This family is only found in Bacteroidetes containing the suite of genes proposed to confer the gliding motility phenotype.
Probab=72.81 E-value=0.29 Score=48.14 Aligned_cols=41 Identities=15% Similarity=-0.027 Sum_probs=36.3
Q ss_pred ccCCccceehhhccccccccCCCC--CCCCccHHHHHHHHHHH
Q 007571 326 DHKKLGDSIVNVLQDCIQLQGTVR--SSPSNRSKEQIEELLNS 366 (598)
Q Consensus 326 ~~~k~GE~~~~~L~pdy~~g~~g~--~ip~~~tl~~~~ELl~~ 366 (598)
..|++||++++.+.|+++||..|. .||+++++.+.++++++
T Consensus 133 ~~Mk~Ge~~~~~iP~~~AYG~~g~~~~Ippns~L~f~IeL~~i 175 (177)
T TIGR03516 133 KLMKEGETATFLFPSHKAYGYYGDQNKIGPNLPIISTVTLLNI 175 (177)
T ss_pred cCCCCCCEEEEEECHHHcCCCCCCCCCcCcCCcEEEEEEEEEe
Confidence 469999999999999999999887 79999999888777654
No 297
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=71.16 E-value=59 Score=41.37 Aligned_cols=86 Identities=9% Similarity=-0.123 Sum_probs=75.4
Q ss_pred CCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCcCHHHHHHHHHHHHHhhcHH
Q 007571 402 GNISGAASKYSEALALCPMRSKKERVVLYSNRAQCHLLMQQPLAAISDATRALCLHNPLNRHAKSLWRRAQAYDMLALAK 481 (598)
Q Consensus 402 GdY~eAIe~YskALel~P~~~~~~~a~ly~NRA~cylKLgdyeeAI~D~~kALeLdP~~~~~~KAyyRRAqAy~~LGdy~ 481 (598)
|.-+.-.+-|.+|.+++.. ...|.-++-.|.+-+++++|.+.++..++---. ..+.|...|..++...+-+
T Consensus 1511 G~eesl~kVFeRAcqycd~------~~V~~~L~~iy~k~ek~~~A~ell~~m~KKF~q---~~~vW~~y~~fLl~~ne~~ 1581 (1710)
T KOG1070|consen 1511 GTEESLKKVFERACQYCDA------YTVHLKLLGIYEKSEKNDEADELLRLMLKKFGQ---TRKVWIMYADFLLRQNEAE 1581 (1710)
T ss_pred CcHHHHHHHHHHHHHhcch------HHHHHHHHHHHHHhhcchhHHHHHHHHHHHhcc---hhhHHHHHHHHHhcccHHH
Confidence 4445566778899988765 588999999999999999999999999987666 7899999999999999999
Q ss_pred HHHHHHHHHHHHhcc
Q 007571 482 ESLLDAILFINECSQ 496 (598)
Q Consensus 482 EAl~d~~kALel~~k 496 (598)
.|..-+.+||+..|+
T Consensus 1582 aa~~lL~rAL~~lPk 1596 (1710)
T KOG1070|consen 1582 AARELLKRALKSLPK 1596 (1710)
T ss_pred HHHHHHHHHHhhcch
Confidence 999999999999987
No 298
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=70.11 E-value=36 Score=38.01 Aligned_cols=96 Identities=19% Similarity=0.034 Sum_probs=76.8
Q ss_pred HHHHcCCHHHHHHHHHHHHHh---CCCCchHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCcCHHHHHHHHHH
Q 007571 397 SLFSAGNISGAASKYSEALAL---CPMRSKKERVVLYSNRAQCHLLMQQPLAAISDATRALCLHNPLNRHAKSLWRRAQA 473 (598)
Q Consensus 397 ~lfk~GdY~eAIe~YskALel---~P~~~~~~~a~ly~NRA~cylKLgdyeeAI~D~~kALeLdP~~~~~~KAyyRRAqA 473 (598)
.....|+++.|++..+..... .+...+..++.++.-.|+..+.- +...|..+..++++|.|+ .+.+-.--+.+
T Consensus 197 ~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~lda-dp~~Ar~~A~~a~KL~pd---lvPaav~AAra 272 (531)
T COG3898 197 ARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDA-DPASARDDALEANKLAPD---LVPAAVVAARA 272 (531)
T ss_pred HHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcC-ChHHHHHHHHHHhhcCCc---cchHHHHHHHH
Confidence 356789999999988776543 34444566788888777776654 589999999999999999 88888888999
Q ss_pred HHHhhcHHHHHHHHHHHHHHhcc
Q 007571 474 YDMLALAKESLLDAILFINECSQ 496 (598)
Q Consensus 474 y~~LGdy~EAl~d~~kALel~~k 496 (598)
|..-|+...+-..++.+-+..|.
T Consensus 273 lf~d~~~rKg~~ilE~aWK~ePH 295 (531)
T COG3898 273 LFRDGNLRKGSKILETAWKAEPH 295 (531)
T ss_pred HHhccchhhhhhHHHHHHhcCCC
Confidence 99999999998888888777664
No 299
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=69.98 E-value=78 Score=30.99 Aligned_cols=99 Identities=13% Similarity=-0.146 Sum_probs=74.1
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCcCHHH
Q 007571 387 AALVVKLEGNSLFSAGNISGAASKYSEALALCPMRSKKERVVLYSNRAQCHLLMQQPLAAISDATRALCLHNPLNRHAKS 466 (598)
Q Consensus 387 ~A~~lKeeGN~lfk~GdY~eAIe~YskALel~P~~~~~~~a~ly~NRA~cylKLgdyeeAI~D~~kALeLdP~~~~~~KA 466 (598)
....+.+......+.++...+...+.-.--+-|.. +.+-.--|..++..|+|.+|+..++.+.+-.|. .+..|+
T Consensus 9 iv~gLie~~~~al~~~~~~D~e~lL~ALrvLRP~~-----~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~-~p~~kA 82 (160)
T PF09613_consen 9 IVGGLIEVLSVALRLGDPDDAEALLDALRVLRPEF-----PELDLFDGWLHIVRGDWDDALRLLRELEERAPG-FPYAKA 82 (160)
T ss_pred HHHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCc-----hHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCC-ChHHHH
Confidence 35566777777778888999988887777788987 777777889999999999999999998777776 113455
Q ss_pred HHHHHHHHHHhhcHHHHHHHHHHHHHHh
Q 007571 467 LWRRAQAYDMLALAKESLLDAILFINEC 494 (598)
Q Consensus 467 yyRRAqAy~~LGdy~EAl~d~~kALel~ 494 (598)
+ ++.|+..+|+..-=. .-..+++..
T Consensus 83 L--lA~CL~~~~D~~Wr~-~A~evle~~ 107 (160)
T PF09613_consen 83 L--LALCLYALGDPSWRR-YADEVLESG 107 (160)
T ss_pred H--HHHHHHHcCChHHHH-HHHHHHhcC
Confidence 5 488999999875432 124445544
No 300
>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]
Probab=69.49 E-value=25 Score=40.78 Aligned_cols=95 Identities=17% Similarity=0.035 Sum_probs=77.8
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHHHcCChHHHHHHHHH-HHHhCCCCCcCHHHHHHH--
Q 007571 394 EGNSLFSAGNISGAASKYSEALALCPMRSKKERVVLYSNRAQCHLLMQQPLAAISDATR-ALCLHNPLNRHAKSLWRR-- 470 (598)
Q Consensus 394 eGN~lfk~GdY~eAIe~YskALel~P~~~~~~~a~ly~NRA~cylKLgdyeeAI~D~~k-ALeLdP~~~~~~KAyyRR-- 470 (598)
..-.++..+....|+.....++..+|.+ +.++.|++.+....|....++.+... +....|+ +......+
T Consensus 73 lsi~~~~~~~~~~~~~~~~~~l~~~~~~-----~~~~~~L~~ale~~~~~~~~~~~~~~~a~~~~~~---~~~~~~~~~~ 144 (620)
T COG3914 73 LSILLAPLADSTLAFLAKRIPLSVNPEN-----CPAVQNLAAALELDGLQFLALADISEIAEWLSPD---NAEFLGHLIR 144 (620)
T ss_pred HHhhccccccchhHHHHHhhhHhcCccc-----chHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCcc---hHHHHhhHHH
Confidence 3444566778888899999999999998 99999999998888876666665555 8999998 76665555
Q ss_pred ----HHHHHHhhcHHHHHHHHHHHHHHhcc
Q 007571 471 ----AQAYDMLALAKESLLDAILFINECSQ 496 (598)
Q Consensus 471 ----AqAy~~LGdy~EAl~d~~kALel~~k 496 (598)
++-+..+|+..++..+..++..+.|+
T Consensus 145 ~~~~~~~~~~l~~~~~~~~~l~~~~d~~p~ 174 (620)
T COG3914 145 FYQLGRYLKLLGRTAEAELALERAVDLLPK 174 (620)
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHhhhh
Confidence 88888899999999999999988776
No 301
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=69.43 E-value=21 Score=36.49 Aligned_cols=66 Identities=9% Similarity=-0.009 Sum_probs=50.3
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-chHHHHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 007571 389 LVVKLEGNSLFSAGNISGAASKYSEALALCPMR-SKKERVVLYSNRAQCHLLMQQPLAAISDATRAL 454 (598)
Q Consensus 389 ~~lKeeGN~lfk~GdY~eAIe~YskALel~P~~-~~~~~a~ly~NRA~cylKLgdyeeAI~D~~kAL 454 (598)
.-..+.|..+|+.|+|+.|+..|+.+....-.+ -......+...+..|+.++|+.+..+..+-+.+
T Consensus 179 ~l~~~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~~~~~~l~~~leLl 245 (247)
T PF11817_consen 179 YLSLEMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLGDVEDYLTTSLELL 245 (247)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHh
Confidence 345578899999999999999999986553321 235567888888899999999988888776554
No 302
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=68.97 E-value=1.1e+02 Score=34.86 Aligned_cols=98 Identities=7% Similarity=-0.053 Sum_probs=68.7
Q ss_pred HHHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHhCCCCch-----------------------------------------
Q 007571 386 AAALVVKLEGNSLFSAGN-ISGAASKYSEALALCPMRSK----------------------------------------- 423 (598)
Q Consensus 386 ~~A~~lKeeGN~lfk~Gd-Y~eAIe~YskALel~P~~~~----------------------------------------- 423 (598)
..+.-+..-+..+.+.|. =++|++....+++..|.+-.
T Consensus 377 QLvh~L~~~Ak~lW~~g~~dekalnLLk~il~ft~yD~ec~n~v~~fvKq~Y~qaLs~~~~~rLlkLe~fi~e~gl~~i~ 456 (549)
T PF07079_consen 377 QLVHYLVFGAKHLWEIGQCDEKALNLLKLILQFTNYDIECENIVFLFVKQAYKQALSMHAIPRLLKLEDFITEVGLTPIT 456 (549)
T ss_pred HHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCCccc
Confidence 345566666666777776 56666666666665555300
Q ss_pred --HHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCcCHHHHHHHHHHHHHhhcHHHHHHHH
Q 007571 424 --KERVVLYSNRAQCHLLMQQPLAAISDATRALCLHNPLNRHAKSLWRRAQAYDMLALAKESLLDA 487 (598)
Q Consensus 424 --~~~a~ly~NRA~cylKLgdyeeAI~D~~kALeLdP~~~~~~KAyyRRAqAy~~LGdy~EAl~d~ 487 (598)
+....-..-=|.-.+..|+|.+|...+.-..+++|. +.+|.-.|.+++...+|++|...+
T Consensus 457 i~e~eian~LaDAEyLysqgey~kc~~ys~WL~~iaPS----~~~~RLlGl~l~e~k~Y~eA~~~l 518 (549)
T PF07079_consen 457 ISEEEIANFLADAEYLYSQGEYHKCYLYSSWLTKIAPS----PQAYRLLGLCLMENKRYQEAWEYL 518 (549)
T ss_pred ccHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCc----HHHHHHHHHHHHHHhhHHHHHHHH
Confidence 001111222344566799999999999999999995 899999999999999999997654
No 303
>cd02680 MIT_calpain7_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=68.88 E-value=7.4 Score=33.31 Aligned_cols=33 Identities=27% Similarity=0.327 Sum_probs=28.8
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 007571 386 AAALVVKLEGNSLFSAGNISGAASKYSEALALC 418 (598)
Q Consensus 386 ~~A~~lKeeGN~lfk~GdY~eAIe~YskALel~ 418 (598)
+.+..+..+|+..=..|+|++|+..|.+||+++
T Consensus 4 ~kai~Lv~~A~~eD~~gny~eA~~lY~~ale~~ 36 (75)
T cd02680 4 ERAHFLVTQAFDEDEKGNAEEAIELYTEAVELC 36 (75)
T ss_pred HHHHHHHHHHHHhhHhhhHHHHHHHHHHHHHHH
Confidence 467778888888889999999999999999875
No 304
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=66.97 E-value=55 Score=39.71 Aligned_cols=101 Identities=18% Similarity=0.023 Sum_probs=73.6
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHH----------HHhCCCCch-----HHHHHHHHHHHHHHHHcCChHHHHHHHHH
Q 007571 388 ALVVKLEGNSLFSAGNISGAASKYSEA----------LALCPMRSK-----KERVVLYSNRAQCHLLMQQPLAAISDATR 452 (598)
Q Consensus 388 A~~lKeeGN~lfk~GdY~eAIe~YskA----------Lel~P~~~~-----~~~a~ly~NRA~cylKLgdyeeAI~D~~k 452 (598)
-..+.+.+..+-..++.+.|+++|.|+ |.-+|...+ .--..+|.-.|+-.-..|+.+.|+..|..
T Consensus 858 r~Tyy~yA~~Lear~Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~ 937 (1416)
T KOG3617|consen 858 RNTYYNYAKYLEARRDIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSS 937 (1416)
T ss_pred hhhHHHHHHHHHhhccHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHH
Confidence 345666777777788899999999886 222333200 11246777777777789999999999887
Q ss_pred HHHh---------------------CCCCCcCHHHHHHHHHHHHHhhcHHHHHHHHHHHH
Q 007571 453 ALCL---------------------HNPLNRHAKSLWRRAQAYDMLALAKESLLDAILFI 491 (598)
Q Consensus 453 ALeL---------------------dP~~~~~~KAyyRRAqAy~~LGdy~EAl~d~~kAL 491 (598)
|-.. ... +.-|.|.+|.-|...|++.+|+..|.+|-
T Consensus 938 A~D~fs~VrI~C~qGk~~kAa~iA~esg---d~AAcYhlaR~YEn~g~v~~Av~FfTrAq 994 (1416)
T KOG3617|consen 938 AKDYFSMVRIKCIQGKTDKAARIAEESG---DKAACYHLARMYENDGDVVKAVKFFTRAQ 994 (1416)
T ss_pred hhhhhhheeeEeeccCchHHHHHHHhcc---cHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence 7532 233 56789999999999999999999887763
No 305
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=66.73 E-value=5.5 Score=33.01 Aligned_cols=61 Identities=30% Similarity=0.427 Sum_probs=44.2
Q ss_pred cccCCccchhhhhhhhhhcccccHHHHHHHHHhcCCchHHHHHhcccchhhHHHHHHHHhhccccCCCchhhhh
Q 007571 71 LSHDQNIYIPYYAAHIIGSYTMNMEEFAESAVHAGVIPPLVELLRGRLTWVEQRVAVRALGHLATYPSTFPTVA 144 (598)
Q Consensus 71 ~~~~~~~~~~yy~ah~~gsy~~~~~~~~~~av~~~~~~~l~~~~~~~~~wve~r~~~r~l~h~a~~~~~f~~~~ 144 (598)
|.++.|-+|=..|++.+|.+ ... .++|+|+++|. -=.|.=++.|++|||++.+.+ .++.+.
T Consensus 8 l~~~~~~~vr~~a~~~L~~~--~~~---------~~~~~L~~~l~-d~~~~vr~~a~~aL~~i~~~~-~~~~L~ 68 (88)
T PF13646_consen 8 LQNDPDPQVRAEAARALGEL--GDP---------EAIPALIELLK-DEDPMVRRAAARALGRIGDPE-AIPALI 68 (88)
T ss_dssp HHTSSSHHHHHHHHHHHHCC--THH---------HHHHHHHHHHT-SSSHHHHHHHHHHHHCCHHHH-THHHHH
T ss_pred HhcCCCHHHHHHHHHHHHHc--CCH---------hHHHHHHHHHc-CCCHHHHHHHHHHHHHhCCHH-HHHHHH
Confidence 34566666778899999943 333 34999999995 567899999999999997633 344433
No 306
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=66.42 E-value=48 Score=28.89 Aligned_cols=68 Identities=13% Similarity=-0.069 Sum_probs=51.0
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCcCHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHhc
Q 007571 428 VLYSNRAQCHLLMQQPLAAISDATRALCLHNPLNRHAKSLWRRAQAYDMLALAKESLLDAILFINECS 495 (598)
Q Consensus 428 ~ly~NRA~cylKLgdyeeAI~D~~kALeLdP~~~~~~KAyyRRAqAy~~LGdy~EAl~d~~kALel~~ 495 (598)
.-..-.+.=++..++..+|+.-.++||+..++..--..++=.+.+||...|+|.+++.....-+.+..
T Consensus 7 k~~ie~GlkLY~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~fA~~Q~~~A~ 74 (80)
T PF10579_consen 7 KQQIEKGLKLYHQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAFALQQLEIAE 74 (80)
T ss_pred HHHHHHHHHHhccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455666667788999999999999999887211334555668899999999999887777666644
No 307
>PF05804 KAP: Kinesin-associated protein (KAP)
Probab=66.10 E-value=15 Score=43.75 Aligned_cols=229 Identities=23% Similarity=0.288 Sum_probs=134.4
Q ss_pred CcchhhhhHhHhhcCCCCcccccccHHHHHHHHHHhhcCCccccccCCccchhhhhhhhhhcccccHHHHHHHHHhcCCc
Q 007571 28 QVLPISGLWNTAMAHPNDPEFIELGIFECMAALIWKGLKNRRWLSHDQNIYIPYYAAHIIGSYTMNMEEFAESAVHAGVI 107 (598)
Q Consensus 28 ~~~~~~~~~~~~~~~p~~~~~~~lg~~~~~~~l~~~~~~~~~~~~~~~~~~~~yy~ah~~gsy~~~~~~~~~~av~~~~~ 107 (598)
.+++++.|++.+...=|=-+..+.||++-..+|+.-+ |.. -++ =+-.++..-+.+.+- -.+=|+.|+|
T Consensus 307 lil~v~fLkkLSi~~ENK~~m~~~giV~kL~kLl~s~--~~~----l~~-----~aLrlL~NLSfd~~~-R~~mV~~GlI 374 (708)
T PF05804_consen 307 LILAVTFLKKLSIFKENKDEMAESGIVEKLLKLLPSE--NED----LVN-----VALRLLFNLSFDPEL-RSQMVSLGLI 374 (708)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHhcCC--CHH----HHH-----HHHHHHHHhCcCHHH-HHHHHHCCCc
Confidence 4568999999999888888999999999999998532 111 112 267888888888765 5577999999
Q ss_pred hHHHHHhcccchhhHHHHHHHHhhccccCCCchhhhhhhHHHHHHHHHHHhhHHHHHHHhhhhcccccchhhhhhhhccC
Q 007571 108 PPLVELLRGRLTWVEQRVAVRALGHLATYPSTFPTVASHAEILELSIQLAMSSLEIVYSHFYQYFDRRLSYHCDLLTRGM 187 (598)
Q Consensus 108 ~~l~~~~~~~~~wve~r~~~r~l~h~a~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~l~~~~~ 187 (598)
|+|++||.-. + -+.+|++.|-||..-+.+-..++ +.+.++.-|++.. ..++.+.. .+|
T Consensus 375 PkLv~LL~d~-~--~~~val~iLy~LS~dd~~r~~f~-~TdcIp~L~~~Ll-----------~~~~~~v~--~el----- 432 (708)
T PF05804_consen 375 PKLVELLKDP-N--FREVALKILYNLSMDDEARSMFA-YTDCIPQLMQMLL-----------ENSEEEVQ--LEL----- 432 (708)
T ss_pred HHHHHHhCCC-c--hHHHHHHHHHHhccCHhhHHHHh-hcchHHHHHHHHH-----------hCCCcccc--HHH-----
Confidence 9999999842 3 24689999999988776544333 3334433332221 11111211 111
Q ss_pred CCcccccccHHHHHhhhhhhHHHhhhhccccCCccccccchHHhhhccccccccCCCCCccchhHHHHHhhccCCCCccc
Q 007571 188 GGVEMESRKAEEWASQLQCWSLQLINCFAFKPEFLPAICKPEFLAKLPGMWGGLVNENSPAGIGLLRTICHHKLGRGPVA 267 (598)
Q Consensus 188 ~~~~~~~~~ae~w~~ql~c~s~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~gr~~~~ 267 (598)
---++||-.. .+.-.+||+-.=|.-|-.. ..+...|-=+-+||.++.|+ |. ...
T Consensus 433 --------------------iaL~iNLa~~-~rnaqlm~~g~gL~~L~~r---a~~~~D~lLlKlIRNiS~h~-~~-~k~ 486 (708)
T PF05804_consen 433 --------------------IALLINLALN-KRNAQLMCEGNGLQSLMKR---ALKTRDPLLLKLIRNISQHD-GP-LKE 486 (708)
T ss_pred --------------------HHHHHHHhcC-HHHHHHHHhcCcHHHHHHH---HHhcccHHHHHHHHHHHhcC-ch-HHH
Confidence 1123444333 3555677752111111111 13455677677888888876 32 222
Q ss_pred CChHHHHHHHhhhhccchhhhhhhhhhhhhhc--CCc-chhHHhh--hhhhhhhh
Q 007571 268 SCPGLIEALCNIARSSDDWQYMAIDCLLWLLQ--DPS-TCHKVID--KAVPTLID 317 (598)
Q Consensus 268 ~~~~~i~~lc~isrssdd~q~maidcll~l~~--D~~-t~~kvld--~a~~~lvD 317 (598)
...+.|..|-++..+++ -....++|+-.|=. -++ .|.+++. ..+|.+.+
T Consensus 487 ~f~~~i~~L~~~v~~~~-~ee~~vE~LGiLaNL~~~~ld~~~ll~~~~llp~L~~ 540 (708)
T PF05804_consen 487 LFVDFIGDLAKIVSSGD-SEEFVVECLGILANLTIPDLDWAQLLQEYNLLPWLKD 540 (708)
T ss_pred HHHHHHHHHHHHhhcCC-cHHHHHHHHHHHHhcccCCcCHHHHHHhCCHHHHHHH
Confidence 33456666666665544 34666666665533 222 3555543 34444444
No 308
>KOG3540 consensus Beta amyloid precursor protein [General function prediction only]
Probab=64.84 E-value=2.2e+02 Score=32.58 Aligned_cols=75 Identities=17% Similarity=0.192 Sum_probs=50.3
Q ss_pred CCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCcCHHHHHHHHHHHHHhhcHH
Q 007571 402 GNISGAASKYSEALALCPMRSKKERVVLYSNRAQCHLLMQQPLAAISDATRALCLHNPLNRHAKSLWRRAQAYDMLALAK 481 (598)
Q Consensus 402 GdY~eAIe~YskALel~P~~~~~~~a~ly~NRA~cylKLgdyeeAI~D~~kALeLdP~~~~~~KAyyRRAqAy~~LGdy~ 481 (598)
.+-..|++.|-.||+.+|..+ ...+..-+..+.-..++--..+..|..++..||. ||---+.++...|.-.+
T Consensus 326 drrR~Ale~ylaALqa~pprp---~~Vl~aLkrYvRAEqKdr~HTlrhyqHv~~vDpk-----kAaqmk~qV~thLrvIe 397 (615)
T KOG3540|consen 326 DRRRDALENYLAALQADPPRP---HRVLQALKRYVRAEQKDRMHTLRHYQHVLAVDPK-----KAAQMKSQVMTHLRVIE 397 (615)
T ss_pred hHHHHHHHHHHHHHhcCCCCh---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChH-----HHHHHHHHHHHHHHHHH
Confidence 344678888888888887652 2344444555666667777778888888888887 66666667666665555
Q ss_pred HHH
Q 007571 482 ESL 484 (598)
Q Consensus 482 EAl 484 (598)
+-+
T Consensus 398 eR~ 400 (615)
T KOG3540|consen 398 ERI 400 (615)
T ss_pred HHh
Confidence 543
No 309
>cd02683 MIT_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with unknown function, co-occuring with an as yet undescribed domain. The molecular function of the MIT domain is unclear.
Probab=64.08 E-value=14 Score=31.53 Aligned_cols=31 Identities=29% Similarity=0.237 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 007571 387 AALVVKLEGNSLFSAGNISGAASKYSEALAL 417 (598)
Q Consensus 387 ~A~~lKeeGN~lfk~GdY~eAIe~YskALel 417 (598)
.+..+..+|..+=+.|+|.+|+.+|.+||+.
T Consensus 5 ~a~~l~~~Ave~D~~g~y~eAl~~Y~~aie~ 35 (77)
T cd02683 5 AAKEVLKRAVELDQEGRFQEALVCYQEGIDL 35 (77)
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 5677778888888999999999999988875
No 310
>PF00254 FKBP_C: FKBP-type peptidyl-prolyl cis-trans isomerase; InterPro: IPR001179 Synonym(s): Peptidylprolyl cis-trans isomerase FKBP-type peptidylprolyl isomerases (5.2.1.8 from EC) in vertebrates, are receptors for the two immunosuppressants, FK506 and rapamycin. The drugs inhibit T cell proliferation by arresting two distinct cytoplasmic signal transmission pathways. Peptidylprolyl isomerases accelerate protein folding by catalysing the cis-trans isomerisation of proline imidic peptide bonds in oligopeptides. These proteins are found in a variety of organisms.; GO: 0006457 protein folding; PDB: 1IX5_A 3JXV_A 3JYM_A 1T11_A 1PBK_A 1FD9_A 2VCD_A 3B7X_A 1Q6H_B 1Q6I_B ....
Probab=63.58 E-value=0.31 Score=41.82 Aligned_cols=35 Identities=11% Similarity=-0.048 Sum_probs=29.0
Q ss_pred ccCCccceehhhccccccccCCCC---CCCCccHHHHH
Q 007571 326 DHKKLGDSIVNVLQDCIQLQGTVR---SSPSNRSKEQI 360 (598)
Q Consensus 326 ~~~k~GE~~~~~L~pdy~~g~~g~---~ip~~~tl~~~ 360 (598)
..|++||+..+.+.|+++||..+. .+|+++++.|.
T Consensus 53 ~~m~~Ge~~~~~vp~~~ayg~~~~~~~~ip~~~~l~f~ 90 (94)
T PF00254_consen 53 IGMKVGEKREFYVPPELAYGEKGLEPPKIPPNSTLVFE 90 (94)
T ss_dssp TTSBTTEEEEEEEEGGGTTTTTTBCTTTBTTTSEEEEE
T ss_pred ccccCCCEeeeEeCChhhcCccccCCCCcCCCCeEEEE
Confidence 459999999999999999998876 48888766543
No 311
>cd02680 MIT_calpain7_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=63.52 E-value=46 Score=28.53 Aligned_cols=28 Identities=18% Similarity=0.052 Sum_probs=21.6
Q ss_pred HHHHHHHHhhcHHHHHHHHHHHHHHhcc
Q 007571 469 RRAQAYDMLALAKESLLDAILFINECSQ 496 (598)
Q Consensus 469 RRAqAy~~LGdy~EAl~d~~kALel~~k 496 (598)
..|..--..|+|++|+..|..+++.+..
T Consensus 11 ~~A~~eD~~gny~eA~~lY~~ale~~~~ 38 (75)
T cd02680 11 TQAFDEDEKGNAEEAIELYTEAVELCIN 38 (75)
T ss_pred HHHHHhhHhhhHHHHHHHHHHHHHHHHH
Confidence 3344445558999999999999999886
No 312
>cd02681 MIT_calpain7_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=63.37 E-value=16 Score=31.26 Aligned_cols=33 Identities=24% Similarity=0.090 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 007571 386 AAALVVKLEGNSLFSAGNISGAASKYSEALALC 418 (598)
Q Consensus 386 ~~A~~lKeeGN~lfk~GdY~eAIe~YskALel~ 418 (598)
..|..+-.++-.+=+.|+|++|+.+|.+||++.
T Consensus 4 ~~Ai~~a~~Ave~D~~g~y~eA~~~Y~~aie~l 36 (76)
T cd02681 4 RDAVQFARLAVQRDQEGRYSEAVFYYKEAAQLL 36 (76)
T ss_pred HHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHH
Confidence 356777888888889999999999999999753
No 313
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=63.28 E-value=1.3e+02 Score=30.64 Aligned_cols=61 Identities=16% Similarity=-0.022 Sum_probs=48.0
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCcCHHHHHHHHHHHHHhhcHHHHHHHHH
Q 007571 428 VLYSNRAQCHLLMQQPLAAISDATRALCLHNPLNRHAKSLWRRAQAYDMLALAKESLLDAI 488 (598)
Q Consensus 428 ~ly~NRA~cylKLgdyeeAI~D~~kALeLdP~~~~~~KAyyRRAqAy~~LGdy~EAl~d~~ 488 (598)
..-.-+|..+..-+++++|+.....++....+.++-.-+-.|+|.++..+|.+++|+..+.
T Consensus 90 laaL~lAk~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~ 150 (207)
T COG2976 90 LAALELAKAEVEANNLDKAEAQLKQALAQTKDENLKALAALRLARVQLQQKKADAALKTLD 150 (207)
T ss_pred HHHHHHHHHHHhhccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHhhhHHHHHHHHh
Confidence 3345577788899999999999999997755543344566889999999999999965544
No 314
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=63.26 E-value=1.1e+02 Score=33.70 Aligned_cols=66 Identities=17% Similarity=0.025 Sum_probs=49.3
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHHH--cCChHHHHHHHHHHHH
Q 007571 387 AALVVKLEGNSLFSAGNISGAASKYSEALALCPMRSKKERVVLYSNRAQCHLL--MQQPLAAISDATRALC 455 (598)
Q Consensus 387 ~A~~lKeeGN~lfk~GdY~eAIe~YskALel~P~~~~~~~a~ly~NRA~cylK--LgdyeeAI~D~~kALe 455 (598)
.+.....++..+|+.++|..|...++..+...|... . ...+.+++.+|.. .-+|.+|....++.+.
T Consensus 130 ~~~~~~~~a~~l~n~~~y~aA~~~l~~l~~rl~~~~-~--~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~ 197 (379)
T PF09670_consen 130 FGDREWRRAKELFNRYDYGAAARILEELLRRLPGRE-E--YQRYKDLCEGYDAWDRFDHKEALEYLEKLLK 197 (379)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCchh-h--HHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 345566777889999999999999999998645431 1 5677777777764 5578888888876654
No 315
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=63.02 E-value=94 Score=29.52 Aligned_cols=69 Identities=14% Similarity=-0.001 Sum_probs=51.1
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC------CchHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHh
Q 007571 388 ALVVKLEGNSLFSAGNISGAASKYSEALALCPM------RSKKERVVLYSNRAQCHLLMQQPLAAISDATRALCL 456 (598)
Q Consensus 388 A~~lKeeGN~lfk~GdY~eAIe~YskALel~P~------~~~~~~a~ly~NRA~cylKLgdyeeAI~D~~kALeL 456 (598)
+-.+--....+.+.|+|++++..-.+||.+... +..++-..+-+|||.++-.+|+.++|+..++.+-+.
T Consensus 55 A~chA~Ls~A~~~Lgry~e~L~sA~~aL~YFNRRGEL~qdeGklWIaaVfsra~Al~~~Gr~~eA~~~fr~agEM 129 (144)
T PF12968_consen 55 AFCHAGLSGALAGLGRYDECLQSADRALRYFNRRGELHQDEGKLWIAAVFSRAVALEGLGRKEEALKEFRMAGEM 129 (144)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHH--TTSTHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhhccccccccchhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHH
Confidence 333444556678999999999999999876421 223455667788999999999999999999998764
No 316
>cd02678 MIT_VPS4 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in intracellular protein transport proteins of the AAA-ATPase family. The molecular function of the MIT domain is unclear.
Probab=62.90 E-value=17 Score=30.55 Aligned_cols=33 Identities=24% Similarity=0.174 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 007571 385 QAAALVVKLEGNSLFSAGNISGAASKYSEALAL 417 (598)
Q Consensus 385 ~~~A~~lKeeGN~lfk~GdY~eAIe~YskALel 417 (598)
+..+..+..+|...=..|+|++|+.+|.+|++.
T Consensus 3 ~~~A~~l~~~Av~~D~~g~y~eA~~~Y~~aie~ 35 (75)
T cd02678 3 LQKAIELVKKAIEEDNAGNYEEALRLYQHALEY 35 (75)
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 346777888888888999999999999998875
No 317
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=62.79 E-value=31 Score=41.60 Aligned_cols=87 Identities=15% Similarity=-0.003 Sum_probs=59.7
Q ss_pred HHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHHHcCChHHHHHHHHHH----------HHhCCCCCcCHH----------
Q 007571 406 GAASKYSEALALCPMRSKKERVVLYSNRAQCHLLMQQPLAAISDATRA----------LCLHNPLNRHAK---------- 465 (598)
Q Consensus 406 eAIe~YskALel~P~~~~~~~a~ly~NRA~cylKLgdyeeAI~D~~kA----------LeLdP~~~~~~K---------- 465 (598)
+++..+++|+++.....+-.+-..|+|-|.-+-..++.+.|++.|+++ |.-+|. ..+
T Consensus 837 Qs~g~w~eA~eiAE~~DRiHLr~Tyy~yA~~Lear~Di~~AleyyEK~~~hafev~rmL~e~p~---~~e~Yv~~~~d~~ 913 (1416)
T KOG3617|consen 837 QSQGMWSEAFEIAETKDRIHLRNTYYNYAKYLEARRDIEAALEYYEKAGVHAFEVFRMLKEYPK---QIEQYVRRKRDES 913 (1416)
T ss_pred HhcccHHHHHHHHhhccceehhhhHHHHHHHHHhhccHHHHHHHHHhcCChHHHHHHHHHhChH---HHHHHHHhccchH
Confidence 444445556666554433445667888888888888999999988864 334555 333
Q ss_pred HHHHHHHHHHHhhcHHHHHHHHHHHHHHhc
Q 007571 466 SLWRRAQAYDMLALAKESLLDAILFINECS 495 (598)
Q Consensus 466 AyyRRAqAy~~LGdy~EAl~d~~kALel~~ 495 (598)
.|---|+-+...|+.+.|+..|..|-..+.
T Consensus 914 L~~WWgqYlES~GemdaAl~~Y~~A~D~fs 943 (1416)
T KOG3617|consen 914 LYSWWGQYLESVGEMDAALSFYSSAKDYFS 943 (1416)
T ss_pred HHHHHHHHHhcccchHHHHHHHHHhhhhhh
Confidence 333448888889999999999988865443
No 318
>KOG0552 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=62.68 E-value=0.75 Score=47.02 Aligned_cols=39 Identities=18% Similarity=0.093 Sum_probs=35.7
Q ss_pred cCCccceehhhccccccccCCCC-CCCCccHHHHHHHHHH
Q 007571 327 HKKLGDSIVNVLQDCIQLQGTVR-SSPSNRSKEQIEELLN 365 (598)
Q Consensus 327 ~~k~GE~~~~~L~pdy~~g~~g~-~ip~~~tl~~~~ELl~ 365 (598)
.|++|.+=.++|-|.++||..+. .||+++++.|.++|+.
T Consensus 185 GMkvGGkRrviIPp~lgYg~~g~~~IppnstL~fdVEL~~ 224 (226)
T KOG0552|consen 185 GMKVGGKRRVIIPPELGYGKKGVPEIPPNSTLVFDVELLS 224 (226)
T ss_pred hhccCCeeEEEeCccccccccCcCcCCCCCcEEEEEEEEe
Confidence 49999999999999999999998 8999999999887764
No 319
>PF14668 RICTOR_V: Rapamycin-insensitive companion of mTOR, domain 5
Probab=62.37 E-value=7.2 Score=33.15 Aligned_cols=39 Identities=26% Similarity=0.450 Sum_probs=32.5
Q ss_pred hHHHHHHHHhhccccCCCchhhhhhhHHHHHHHHHHHhhH
Q 007571 121 VEQRVAVRALGHLATYPSTFPTVASHAEILELSIQLAMSS 160 (598)
Q Consensus 121 ve~r~~~r~l~h~a~~~~~f~~~~~~~~~~~~~~~~~~~~ 160 (598)
.|.|.|+=|+||++|-+--++-+-.+ ++|+.=+++|.+|
T Consensus 2 ~~lKaaLWaighIgss~~G~~lL~~~-~iv~~iv~~a~~s 40 (73)
T PF14668_consen 2 LELKAALWAIGHIGSSPLGIQLLDES-DIVEDIVKIAENS 40 (73)
T ss_pred hHHHHHHHHHHhHhcChHHHHHHhhc-CHHHHHHHHHHhC
Confidence 36799999999999999999988833 7888888888765
No 320
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=62.12 E-value=15 Score=28.22 Aligned_cols=25 Identities=16% Similarity=-0.077 Sum_probs=22.4
Q ss_pred HHHHHHHHHhhcHHHHHHHHHHHHH
Q 007571 468 WRRAQAYDMLALAKESLLDAILFIN 492 (598)
Q Consensus 468 yRRAqAy~~LGdy~EAl~d~~kALe 492 (598)
+.+|++|..+|+++.|..-++..+.
T Consensus 3 LdLA~ayie~Gd~e~Ar~lL~evl~ 27 (44)
T TIGR03504 3 LDLARAYIEMGDLEGARELLEEVIE 27 (44)
T ss_pred hHHHHHHHHcCChHHHHHHHHHHHH
Confidence 6789999999999999999988885
No 321
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=61.81 E-value=11 Score=49.57 Aligned_cols=69 Identities=22% Similarity=0.233 Sum_probs=54.1
Q ss_pred CccchhhhhhhhhhcccccHHHHHHHHHhcCCchHHHHHhcccchhhHHHHHHHHhhccccCCCchhhhh
Q 007571 75 QNIYIPYYAAHIIGSYTMNMEEFAESAVHAGVIPPLVELLRGRLTWVEQRVAVRALGHLATYPSTFPTVA 144 (598)
Q Consensus 75 ~~~~~~yy~ah~~gsy~~~~~~~~~~av~~~~~~~l~~~~~~~~~wve~r~~~r~l~h~a~~~~~f~~~~ 144 (598)
++.-+-.+|+..||..+-...+-...-+++|+||||++||+.. +---|.-|+.||+-|+.++..-.++-
T Consensus 458 ~s~~iQ~~A~~~L~nLa~~ndenr~aIieaGaIP~LV~LL~s~-~~~iqeeAawAL~NLa~~~~qir~iV 526 (2102)
T PLN03200 458 SSEQQQEYAVALLAILTDEVDESKWAITAAGGIPPLVQLLETG-SQKAKEDSATVLWNLCCHSEDIRACV 526 (2102)
T ss_pred CCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcCC-CHHHHHHHHHHHHHHhCCcHHHHHHH
Confidence 4455567889999988877777666777999999999999765 44667889999999999876555533
No 322
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=61.78 E-value=47 Score=33.98 Aligned_cols=66 Identities=14% Similarity=0.040 Sum_probs=50.4
Q ss_pred HHHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC---CCcCHHHHHHHHHHHHHhhcHHHHHHHHHHH
Q 007571 425 ERVVLYSNRAQCHLLMQQPLAAISDATRALCLHNP---LNRHAKSLWRRAQAYDMLALAKESLLDAILF 490 (598)
Q Consensus 425 ~~a~ly~NRA~cylKLgdyeeAI~D~~kALeLdP~---~~~~~KAyyRRAqAy~~LGdy~EAl~d~~kA 490 (598)
....+...+|.-|++.|+|++|+..++.+...--. ..+....+..+.+|+..+|+.+..+...-+.
T Consensus 176 ~~~~l~~~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~~~~~~l~~~leL 244 (247)
T PF11817_consen 176 MASYLSLEMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLGDVEDYLTTSLEL 244 (247)
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 44666778999999999999999999999654221 1224578888899999999998887655443
No 323
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=61.68 E-value=79 Score=38.28 Aligned_cols=32 Identities=22% Similarity=0.437 Sum_probs=28.6
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 007571 387 AALVVKLEGNSLFSAGNISGAASKYSEALALC 418 (598)
Q Consensus 387 ~A~~lKeeGN~lfk~GdY~eAIe~YskALel~ 418 (598)
.+.-.+..|+.+|++|+|++|...|-++|...
T Consensus 367 ~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~l 398 (933)
T KOG2114|consen 367 LAEIHRKYGDYLYGKGDFDEATDQYIETIGFL 398 (933)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHcccC
Confidence 46778899999999999999999999998754
No 324
>PF06957 COPI_C: Coatomer (COPI) alpha subunit C-terminus; InterPro: IPR010714 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the C terminus (approximately 500 residues) of the eukaryotic coatomer alpha subunit [, ]. This domain is found along with the IPR006692 from INTERPRO domain. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0005515 protein binding, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030126 COPI vesicle coat; PDB: 3MKR_B 3MV2_E 3MKQ_B 3MV3_A.
Probab=61.14 E-value=28 Score=38.95 Aligned_cols=104 Identities=19% Similarity=0.092 Sum_probs=57.0
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---chH-------HHHHHHH-HHHHHH-HHcCCh-HHHHHHHHHHHH-
Q 007571 390 VVKLEGNSLFSAGNISGAASKYSEALALCPMR---SKK-------ERVVLYS-NRAQCH-LLMQQP-LAAISDATRALC- 455 (598)
Q Consensus 390 ~lKeeGN~lfk~GdY~eAIe~YskALel~P~~---~~~-------~~a~ly~-NRA~cy-lKLgdy-eeAI~D~~kALe- 455 (598)
...+.|-.+|+.|+|.+|+..|...|...|-- .++ ....+.- -+|+-. +..+.. +....+-.+.++
T Consensus 206 ~~Lk~gyk~~t~gKF~eA~~~Fr~iL~~i~l~vv~~~~E~~e~~eli~icrEYilgl~iEl~Rr~l~~~~~~~~kR~lEL 285 (422)
T PF06957_consen 206 ERLKEGYKLFTAGKFEEAIEIFRSILHSIPLLVVESREEEDEAKELIEICREYILGLSIELERRELPKDPVEDQKRNLEL 285 (422)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHHHC--BSSCHHHHHHHHHHHHHHHHHHHHHHHHHHCTS-TTTHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHhheeeecCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchhhHHHHHHH
Confidence 34557899999999999999999999875442 111 1111111 122111 112221 122233334443
Q ss_pred --------hCCCCCcCHHHHHHHHH-HHHHhhcHHHHHHHHHHHHHHhcc
Q 007571 456 --------LHNPLNRHAKSLWRRAQ-AYDMLALAKESLLDAILFINECSQ 496 (598)
Q Consensus 456 --------LdP~~~~~~KAyyRRAq-Ay~~LGdy~EAl~d~~kALel~~k 496 (598)
|.|. |.-.-.|.|. ..++.++|.-|....++.|++.|+
T Consensus 286 AAYFThc~LQp~---H~~LaLr~AM~~~~K~KNf~tAa~FArRLLel~p~ 332 (422)
T PF06957_consen 286 AAYFTHCKLQPS---HLILALRSAMSQAFKLKNFITAASFARRLLELNPS 332 (422)
T ss_dssp HHHHCCS---HH---HHHHHHHHHHHHCCCTTBHHHHHHHHHHHHCT--S
T ss_pred HHHHhcCCCcHH---HHHHHHHHHHHHHHHhccHHHHHHHHHHHHHcCCC
Confidence 4555 5544455544 556779999999998999988653
No 325
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=60.89 E-value=10 Score=25.32 Aligned_cols=21 Identities=19% Similarity=-0.066 Sum_probs=10.5
Q ss_pred HHHHHHHHHHcCChHHHHHHH
Q 007571 430 YSNRAQCHLLMQQPLAAISDA 450 (598)
Q Consensus 430 y~NRA~cylKLgdyeeAI~D~ 450 (598)
+.++|.++..+|++++|...+
T Consensus 4 ~~~la~~~~~~G~~~eA~~~l 24 (26)
T PF07721_consen 4 RLALARALLAQGDPDEAERLL 24 (26)
T ss_pred HHHHHHHHHHcCCHHHHHHHH
Confidence 444555555555555554433
No 326
>smart00745 MIT Microtubule Interacting and Trafficking molecule domain.
Probab=60.58 E-value=57 Score=27.05 Aligned_cols=32 Identities=19% Similarity=0.143 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 007571 386 AAALVVKLEGNSLFSAGNISGAASKYSEALAL 417 (598)
Q Consensus 386 ~~A~~lKeeGN~lfk~GdY~eAIe~YskALel 417 (598)
..|..+..+|...=+.|+|++|+.+|.+|++.
T Consensus 6 ~~A~~li~~Av~~d~~g~~~eAl~~Y~~a~e~ 37 (77)
T smart00745 6 SKAKELISKALKADEAGDYEEALELYKKAIEY 37 (77)
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 45667777888888899999999999998875
No 327
>cd02684 MIT_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with an n-terminal serine/threonine kinase domain. The molecular function of the MIT domain is unclear.
Probab=60.39 E-value=15 Score=31.15 Aligned_cols=33 Identities=21% Similarity=0.239 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 007571 385 QAAALVVKLEGNSLFSAGNISGAASKYSEALAL 417 (598)
Q Consensus 385 ~~~A~~lKeeGN~lfk~GdY~eAIe~YskALel 417 (598)
+..|..+..+|...=..|+|++|+.+|.+||+.
T Consensus 3 l~~Ai~lv~~Av~~D~~g~y~eA~~lY~~ale~ 35 (75)
T cd02684 3 LEKAIALVVQAVKKDQRGDAAAALSLYCSALQY 35 (75)
T ss_pred HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 346777888888888999999999999999875
No 328
>PF14863 Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB: 2YHE_C 2CG2_A 2CG3_A 2CFU_A 2CFZ_A.
Probab=59.92 E-value=35 Score=32.57 Aligned_cols=54 Identities=17% Similarity=0.039 Sum_probs=39.9
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCcCHHHHHHHHHHHHHhhcHHHH
Q 007571 427 VVLYSNRAQCHLLMQQPLAAISDATRALCLHNPLNRHAKSLWRRAQAYDMLALAKES 483 (598)
Q Consensus 427 a~ly~NRA~cylKLgdyeeAI~D~~kALeLdP~~~~~~KAyyRRAqAy~~LGdy~EA 483 (598)
......+|...+..|+|.-|+..++.++..+|+ +..+..-++.+|.++|.-.+.
T Consensus 70 ~d~vl~~A~~~~~~gd~~wA~~L~d~l~~adp~---n~~ar~l~A~al~~lg~~~~~ 123 (141)
T PF14863_consen 70 ADKVLERAQAALAAGDYQWAAELLDHLVFADPD---NEEARQLKADALEQLGYQSEN 123 (141)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TT----HHHHHHHHHHHHHHHHH-SS
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCC---cHHHHHHHHHHHHHHHHhccC
Confidence 344556777788888888888888888889998 888888888888888875544
No 329
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=59.59 E-value=83 Score=36.22 Aligned_cols=92 Identities=12% Similarity=-0.095 Sum_probs=71.7
Q ss_pred HHHHHHHHHHcC-----CHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHHHcC---ChHHHHHHHHHHHHhCCCCCc
Q 007571 391 VKLEGNSLFSAG-----NISGAASKYSEALALCPMRSKKERVVLYSNRAQCHLLMQ---QPLAAISDATRALCLHNPLNR 462 (598)
Q Consensus 391 lKeeGN~lfk~G-----dY~eAIe~YskALel~P~~~~~~~a~ly~NRA~cylKLg---dyeeAI~D~~kALeLdP~~~~ 462 (598)
....|..+++.. ++..|+..|.+|-+.... .+..++|.||..-. ++..|...+..|... .
T Consensus 291 ~~~lg~~Y~~g~~~~~~d~~~A~~~~~~aA~~g~~-------~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~--G--- 358 (552)
T KOG1550|consen 291 QYGLGRLYLQGLGVEKIDYEKALKLYTKAAELGNP-------DAQYLLGVLYETGTKERDYRRAFEYYSLAAKA--G--- 358 (552)
T ss_pred ccHHHHHHhcCCCCccccHHHHHHHHHHHHhcCCc-------hHHHHHHHHHHcCCccccHHHHHHHHHHHHHc--C---
Confidence 556777777643 789999999999987653 45667888887655 678899999888665 3
Q ss_pred CHHHHHHHHHHHHHh----hcHHHHHHHHHHHHHHh
Q 007571 463 HAKSLWRRAQAYDML----ALAKESLLDAILFINEC 494 (598)
Q Consensus 463 ~~KAyyRRAqAy~~L----Gdy~EAl~d~~kALel~ 494 (598)
+..|+++.|.+|..= .+...|...|+++-+.-
T Consensus 359 ~~~A~~~la~~y~~G~gv~r~~~~A~~~~k~aA~~g 394 (552)
T KOG1550|consen 359 HILAIYRLALCYELGLGVERNLELAFAYYKKAAEKG 394 (552)
T ss_pred ChHHHHHHHHHHHhCCCcCCCHHHHHHHHHHHHHcc
Confidence 789999999988753 47889999999888775
No 330
>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [].; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.
Probab=59.38 E-value=29 Score=25.41 Aligned_cols=31 Identities=13% Similarity=0.044 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHH--HHHHhCCC
Q 007571 390 VVKLEGNSLFSAGNISGAASKYS--EALALCPM 420 (598)
Q Consensus 390 ~lKeeGN~lfk~GdY~eAIe~Ys--kALel~P~ 420 (598)
.+...|-.++.+|+|++|+..|+ -+..++|.
T Consensus 3 ~~y~~a~~~y~~~ky~~A~~~~~y~~l~~ld~~ 35 (36)
T PF07720_consen 3 YLYGLAYNFYQKGKYDEAIHFFQYAFLCALDKY 35 (36)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHhccc
Confidence 35566888889999999999944 77777664
No 331
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []. Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....
Probab=58.85 E-value=6.5 Score=27.27 Aligned_cols=30 Identities=27% Similarity=0.407 Sum_probs=23.6
Q ss_pred CchHHHHHhcccchhhHHHHHHHHhhccccC
Q 007571 106 VIPPLVELLRGRLTWVEQRVAVRALGHLATY 136 (598)
Q Consensus 106 ~~~~l~~~~~~~~~wve~r~~~r~l~h~a~~ 136 (598)
++|.|+++|.-. +|-=+..|+++||.++.+
T Consensus 1 llp~l~~~l~D~-~~~VR~~a~~~l~~i~~~ 30 (31)
T PF02985_consen 1 LLPILLQLLNDP-SPEVRQAAAECLGAIAEH 30 (31)
T ss_dssp HHHHHHHHHT-S-SHHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHcCCC-CHHHHHHHHHHHHHHHhh
Confidence 379999999988 455577899999998764
No 332
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=58.11 E-value=97 Score=33.02 Aligned_cols=85 Identities=9% Similarity=-0.155 Sum_probs=63.8
Q ss_pred HHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCcCHHHHHHH---HHHHHHhhcH
Q 007571 404 ISGAASKYSEALALCPMRSKKERVVLYSNRAQCHLLMQQPLAAISDATRALCLHNPLNRHAKSLWRR---AQAYDMLALA 480 (598)
Q Consensus 404 Y~eAIe~YskALel~P~~~~~~~a~ly~NRA~cylKLgdyeeAI~D~~kALeLdP~~~~~~KAyyRR---AqAy~~LGdy 480 (598)
.+..+..|.+||+.+|.+ ..++.-+=.+..++.+-++..+-.++++..+|+ ++..+... -+.....-.+
T Consensus 47 ~E~klsilerAL~~np~~-----~~L~l~~l~~~~~~~~~~~l~~~we~~l~~~~~---~~~LW~~yL~~~q~~~~~f~v 118 (321)
T PF08424_consen 47 AERKLSILERALKHNPDS-----ERLLLGYLEEGEKVWDSEKLAKKWEELLFKNPG---SPELWREYLDFRQSNFASFTV 118 (321)
T ss_pred HHHHHHHHHHHHHhCCCC-----HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCC---ChHHHHHHHHHHHHHhccCcH
Confidence 467788999999999987 555555556667888999999999999999998 66544433 3333334467
Q ss_pred HHHHHHHHHHHHHhcc
Q 007571 481 KESLLDAILFINECSQ 496 (598)
Q Consensus 481 ~EAl~d~~kALel~~k 496 (598)
......|.++|+....
T Consensus 119 ~~~~~~y~~~l~~L~~ 134 (321)
T PF08424_consen 119 SDVRDVYEKCLRALSR 134 (321)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 8888888888887765
No 333
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=57.97 E-value=59 Score=34.51 Aligned_cols=64 Identities=14% Similarity=0.104 Sum_probs=57.4
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 007571 387 AALVVKLEGNSLFSAGNISGAASKYSEALALCPMRSKKERVVLYSNRAQCHLLMQQPLAAISDATRALC 455 (598)
Q Consensus 387 ~A~~lKeeGN~lfk~GdY~eAIe~YskALel~P~~~~~~~a~ly~NRA~cylKLgdyeeAI~D~~kALe 455 (598)
....+.+....+...|+++.+++..++-+..+|.+ -.+|.-+=..|++.|+...||..|.+.-+
T Consensus 152 ~~~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~-----E~~~~~lm~~y~~~g~~~~ai~~y~~l~~ 215 (280)
T COG3629 152 FIKALTKLAEALIACGRADAVIEHLERLIELDPYD-----EPAYLRLMEAYLVNGRQSAAIRAYRQLKK 215 (280)
T ss_pred HHHHHHHHHHHHHhcccHHHHHHHHHHHHhcCccc-----hHHHHHHHHHHHHcCCchHHHHHHHHHHH
Confidence 46677788888999999999999999999999998 78888888999999999999999987754
No 334
>cd02656 MIT MIT: domain contained within Microtubule Interacting and Trafficking molecules. The MIT domain is found in sorting nexins, the nuclear thiol protease PalBH, the AAA protein spastin and archaebacterial proteins with similar domain architecture, vacuolar sorting proteins and others. The molecular function of the MIT domain is unclear.
Probab=57.60 E-value=24 Score=29.30 Aligned_cols=32 Identities=25% Similarity=0.151 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 007571 386 AAALVVKLEGNSLFSAGNISGAASKYSEALAL 417 (598)
Q Consensus 386 ~~A~~lKeeGN~lfk~GdY~eAIe~YskALel 417 (598)
..+..+..+|...=+.|+|++|+.+|..|++.
T Consensus 4 ~~a~~l~~~Av~~D~~g~~~~Al~~Y~~a~e~ 35 (75)
T cd02656 4 QQAKELIKQAVKEDEDGNYEEALELYKEALDY 35 (75)
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 45666777788888889999999999998875
No 335
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=57.32 E-value=1.1e+02 Score=36.14 Aligned_cols=104 Identities=14% Similarity=0.002 Sum_probs=63.7
Q ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCcC
Q 007571 384 KQAAALVVKLEGNSLFSAGNISGAASKYSEALALCPMRSKKERVVLYSNRAQCHLLMQQPLAAISDATRALCLHNPLNRH 463 (598)
Q Consensus 384 ~~~~A~~lKeeGN~lfk~GdY~eAIe~YskALel~P~~~~~~~a~ly~NRA~cylKLgdyeeAI~D~~kALeLdP~~~~~ 463 (598)
++....-..+-|+-+=...-|++|-+.|.+.|.+.|-...-+.-..|.-.....+.-.+.+.|...+++||+.-|+. +
T Consensus 507 riaTPqii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~klEraRdLFEqaL~~Cpp~--~ 584 (835)
T KOG2047|consen 507 RIATPQIIINYAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLERARDLFEQALDGCPPE--H 584 (835)
T ss_pred hcCCHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCHH--H
Confidence 34445555566666666666788888888888887765444455556666666666667888888888888876652 5
Q ss_pred HHHHHHH-HHHHHHhhcHHHHHHHHHH
Q 007571 464 AKSLWRR-AQAYDMLALAKESLLDAIL 489 (598)
Q Consensus 464 ~KAyyRR-AqAy~~LGdy~EAl~d~~k 489 (598)
.|..|-+ |+.-..-|....|+..|++
T Consensus 585 aKtiyLlYA~lEEe~GLar~amsiyer 611 (835)
T KOG2047|consen 585 AKTIYLLYAKLEEEHGLARHAMSIYER 611 (835)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 5544432 3333333444444444333
No 336
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=57.28 E-value=42 Score=34.06 Aligned_cols=75 Identities=24% Similarity=0.176 Sum_probs=55.9
Q ss_pred HHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC-CcCHHHHHHHHHHHHHhhcHHHH
Q 007571 405 SGAASKYSEALALCPMRSKKERVVLYSNRAQCHLLMQQPLAAISDATRALCLHNPL-NRHAKSLWRRAQAYDMLALAKES 483 (598)
Q Consensus 405 ~eAIe~YskALel~P~~~~~~~a~ly~NRA~cylKLgdyeeAI~D~~kALeLdP~~-~~~~KAyyRRAqAy~~LGdy~EA 483 (598)
+.|...|-++=. .|.- ..+.+..-+|.-|. ..+.++|+..+.+||++.+.. +.++..+.-+|.+++.+|+++.|
T Consensus 123 ~~A~~~fL~~E~-~~~l---~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~A 197 (203)
T PF11207_consen 123 QEALRRFLQLEG-TPEL---ETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQA 197 (203)
T ss_pred HHHHHHHHHHcC-CCCC---CCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhh
Confidence 556655543322 2221 12666666666555 678999999999999998775 77999999999999999999998
Q ss_pred H
Q 007571 484 L 484 (598)
Q Consensus 484 l 484 (598)
.
T Consensus 198 Y 198 (203)
T PF11207_consen 198 Y 198 (203)
T ss_pred h
Confidence 5
No 337
>cd02681 MIT_calpain7_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=56.90 E-value=51 Score=28.21 Aligned_cols=31 Identities=13% Similarity=-0.153 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHhhcHHHHHHHHHHHHHHhcc
Q 007571 466 SLWRRAQAYDMLALAKESLLDAILFINECSQ 496 (598)
Q Consensus 466 AyyRRAqAy~~LGdy~EAl~d~~kALel~~k 496 (598)
.+.++|.-....|+|++|+..|..+++.+..
T Consensus 8 ~~a~~Ave~D~~g~y~eA~~~Y~~aie~l~~ 38 (76)
T cd02681 8 QFARLAVQRDQEGRYSEAVFYYKEAAQLLIY 38 (76)
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHHHH
Confidence 3444455555558888888888888877654
No 338
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells. 26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding
Probab=56.63 E-value=17 Score=41.32 Aligned_cols=209 Identities=18% Similarity=0.248 Sum_probs=0.0
Q ss_pred cccccHHHHHHHHHHhhcCCccccccCCccchhhhhhhhhhcccccHHHHHHHHH-----hcCCchHHHHHhc---ccch
Q 007571 48 FIELGIFECMAALIWKGLKNRRWLSHDQNIYIPYYAAHIIGSYTMNMEEFAESAV-----HAGVIPPLVELLR---GRLT 119 (598)
Q Consensus 48 ~~~lg~~~~~~~l~~~~~~~~~~~~~~~~~~~~yy~ah~~gsy~~~~~~~~~~av-----~~~~~~~l~~~~~---~~~~ 119 (598)
+..-|||.=+..+|...-.|. +...+|||-+. .-|...|. =.+..|.+++.|. -.-.
T Consensus 239 L~~~gi~~~L~~~l~~~~~dp----~~~~~~l~g~~-----------~f~g~la~~~~~~v~~~~p~~~~~l~~~~~s~d 303 (503)
T PF10508_consen 239 LEQQGIFDKLSNLLQDSEEDP----RLSSLLLPGRM-----------KFFGNLARVSPQEVLELYPAFLERLFSMLESQD 303 (503)
T ss_pred HHhCCHHHHHHHHHhccccCC----cccchhhhhHH-----------HHHHHHHhcChHHHHHHHHHHHHHHHHHhCCCC
Q ss_pred hhHHHHHHHHhhccccCCCchhhh-hhhHHHHHHHHHHH---------------hhHHHHHHHhhhhcccccchhhhhhh
Q 007571 120 WVEQRVAVRALGHLATYPSTFPTV-ASHAEILELSIQLA---------------MSSLEIVYSHFYQYFDRRLSYHCDLL 183 (598)
Q Consensus 120 wve~r~~~r~l~h~a~~~~~f~~~-~~~~~~~~~~~~~~---------------~~~~~~~~~~~~~~~~~~~~y~~~l~ 183 (598)
=.++=+|+=+||+++|-..-+..+ ..+++.++.+|+.+ .+|+..++.....-.+.++.
T Consensus 304 ~~~~~~A~dtlg~igst~~G~~~L~~~~~~~~~~~l~~~~~~~~~~~~~lk~r~l~al~~il~~~~~~~~~~i~------ 377 (503)
T PF10508_consen 304 PTIREVAFDTLGQIGSTVEGKQLLLQKQGPAMKHVLKAIGDAIKSGSTELKLRALHALASILTSGTDRQDNDIL------ 377 (503)
T ss_pred hhHHHHHHHHHHHHhCCHHHHHHHHhhcchHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhcCCCCchHHHH------
Q ss_pred hccCCCcccccccHHHHHhhhhhhHHHhhhhccccCCccccccchHHhhhccccccccCCCCCccchhHHHHHhhccCCC
Q 007571 184 TRGMGGVEMESRKAEEWASQLQCWSLQLINCFAFKPEFLPAICKPEFLAKLPGMWGGLVNENSPAGIGLLRTICHHKLGR 263 (598)
Q Consensus 184 ~~~~~~~~~~~~~ae~w~~ql~c~s~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~gr 263 (598)
.-.+.|=..+.==++.. .+--+|++-| .+--=|+.++|+.+|.++-|-
T Consensus 378 -----------~~~~~w~~~~~~~~~~~---------~l~~~~~qPF------------~elr~a~~~~l~~l~~~~Wg~ 425 (503)
T PF10508_consen 378 -----------SITESWYESLSGSPLSN---------LLMSLLKQPF------------PELRCAAYRLLQALAAQPWGQ 425 (503)
T ss_pred -----------HHHHHHHHHhcCCchHH---------HHHHHhcCCc------------hHHHHHHHHHHHHHhcCHHHH
Q ss_pred CcccCChHHHHHHHhhhh-ccchhhhhhhhhhhhhhcCCcchhHHhh
Q 007571 264 GPVASCPGLIEALCNIAR-SSDDWQYMAIDCLLWLLQDPSTCHKVID 309 (598)
Q Consensus 264 ~~~~~~~~~i~~lc~isr-ssdd~q~maidcll~l~~D~~t~~kvld 309 (598)
..+..+|+.||.|.+=.. ...+-.+...+|.-.+.+...+...+.+
T Consensus 426 ~~i~~~~gfie~lldr~~E~~K~~ke~K~~ii~~l~~~~~~~~~~~~ 472 (503)
T PF10508_consen 426 REICSSPGFIEYLLDRSTETTKEGKEAKYDIIKALAKSSTNASSVFD 472 (503)
T ss_pred HHHHhCccHHhhhcCCCCCCCHHHHHHHHHHHHHHHhcccchhhcCC
No 339
>KOG2300 consensus Uncharacterized conserved protein [Function unknown]
Probab=56.55 E-value=1e+02 Score=35.43 Aligned_cols=102 Identities=18% Similarity=-0.048 Sum_probs=73.1
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHh-CCCC-----
Q 007571 387 AALVVKLEGNSLFSAGNISGAASKYSEALALCPMRSKKERVVLYSNRAQCHLLMQQPLAAISDATRALCL-HNPL----- 460 (598)
Q Consensus 387 ~A~~lKeeGN~lfk~GdY~eAIe~YskALel~P~~~~~~~a~ly~NRA~cylKLgdyeeAI~D~~kALeL-dP~~----- 460 (598)
.+.-..-.|.-...-+.|+.|...|..|+++... .+..+.+-.|+|..|+..++-+ |+.++++. .|..
T Consensus 366 ~~~ih~LlGlys~sv~~~enAe~hf~~a~k~t~~--~dl~a~~nlnlAi~YL~~~~~e----d~y~~ld~i~p~nt~s~s 439 (629)
T KOG2300|consen 366 EAQIHMLLGLYSHSVNCYENAEFHFIEATKLTES--IDLQAFCNLNLAISYLRIGDAE----DLYKALDLIGPLNTNSLS 439 (629)
T ss_pred HHHHHHHHhhHhhhcchHHHHHHHHHHHHHhhhH--HHHHHHHHHhHHHHHHHhccHH----HHHHHHHhcCCCCCCcch
Confidence 4555566777777888999999999999987654 3567888888999999877643 44455543 3331
Q ss_pred --CcCHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHh
Q 007571 461 --NRHAKSLWRRAQAYDMLALAKESLLDAILFINEC 494 (598)
Q Consensus 461 --~~~~KAyyRRAqAy~~LGdy~EAl~d~~kALel~ 494 (598)
.+-...+|-.|.-.+..+++.||...+.+.++..
T Consensus 440 sq~l~a~~~~v~glfaf~qn~lnEaK~~l~e~Lkma 475 (629)
T KOG2300|consen 440 SQRLEASILYVYGLFAFKQNDLNEAKRFLRETLKMA 475 (629)
T ss_pred HHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhc
Confidence 0123567777888888888999988888887765
No 340
>PRK11570 peptidyl-prolyl cis-trans isomerase; Provisional
Probab=55.69 E-value=0.94 Score=45.58 Aligned_cols=41 Identities=15% Similarity=-0.009 Sum_probs=35.6
Q ss_pred cccCCccceehhhccccccccCCCC--CCCCccHHHHHHHHHH
Q 007571 325 GDHKKLGDSIVNVLQDCIQLQGTVR--SSPSNRSKEQIEELLN 365 (598)
Q Consensus 325 g~~~k~GE~~~~~L~pdy~~g~~g~--~ip~~~tl~~~~ELl~ 365 (598)
-..|++|++..+.|.|+.+||..|. .|||+.++.|.+++++
T Consensus 162 L~~M~~G~k~~~~IP~~lAYG~~g~~~~Ipp~s~Lif~veLl~ 204 (206)
T PRK11570 162 LTLMPVGSKWELTIPHELAYGERGAGASIPPFSTLVFEVELLE 204 (206)
T ss_pred HcCCCCCCEEEEEECHHHcCCCCCCCCCcCCCCeEEEEEEEEE
Confidence 3569999999999999999999886 7999999988877654
No 341
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=54.55 E-value=14 Score=24.62 Aligned_cols=24 Identities=13% Similarity=-0.170 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHhhcHHHHHHHHH
Q 007571 465 KSLWRRAQAYDMLALAKESLLDAI 488 (598)
Q Consensus 465 KAyyRRAqAy~~LGdy~EAl~d~~ 488 (598)
.+++.+|.++...|++++|...++
T Consensus 2 ~a~~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 2 RARLALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHh
Confidence 467889999999999999987654
No 342
>PF14863 Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB: 2YHE_C 2CG2_A 2CG3_A 2CFU_A 2CFZ_A.
Probab=54.13 E-value=39 Score=32.19 Aligned_cols=49 Identities=16% Similarity=0.013 Sum_probs=37.9
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHHHcC
Q 007571 388 ALVVKLEGNSLFSAGNISGAASKYSEALALCPMRSKKERVVLYSNRAQCHLLMQ 441 (598)
Q Consensus 388 A~~lKeeGN~lfk~GdY~eAIe~YskALel~P~~~~~~~a~ly~NRA~cylKLg 441 (598)
+.++.+++...+.+|+|.-|++.-+.++..+|++ ..+..-+|.+|..++
T Consensus 70 ~d~vl~~A~~~~~~gd~~wA~~L~d~l~~adp~n-----~~ar~l~A~al~~lg 118 (141)
T PF14863_consen 70 ADKVLERAQAALAAGDYQWAAELLDHLVFADPDN-----EEARQLKADALEQLG 118 (141)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TT------HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCc-----HHHHHHHHHHHHHHH
Confidence 4578889999999999999999999999999998 566666666666554
No 343
>KOG0546 consensus HSP90 co-chaperone CPR7/Cyclophilin [Posttranslational modification, protein turnover, chaperones]
Probab=54.11 E-value=11 Score=41.21 Aligned_cols=62 Identities=18% Similarity=0.018 Sum_probs=53.9
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC
Q 007571 393 LEGNSLFSAGNISGAASKYSEALALCPMRSKKERVVLYSNRAQCHLLMQQPLAAISDATRALCLHNP 459 (598)
Q Consensus 393 eeGN~lfk~GdY~eAIe~YskALel~P~~~~~~~a~ly~NRA~cylKLgdyeeAI~D~~kALeLdP~ 459 (598)
+.+...++.+.|..|+..-..++..++.. ..+|+-|++.++.+.++++|+++...+....|+
T Consensus 280 n~~~~~lk~~~~~~a~~~~~~~~~~~~s~-----tka~~Rr~~~~~~~~~~~~a~~~~~~a~~~~p~ 341 (372)
T KOG0546|consen 280 NLAAVGLKVKGRGGARFRTNEALRDERSK-----TKAHYRRGQAYKLLKNYDEALEDLKKAKQKAPN 341 (372)
T ss_pred chHHhcccccCCCcceeccccccccChhh-----CcHHHHHHhHHHhhhchhhhHHHHHHhhccCcc
Confidence 35555678888888888888888876666 889999999999999999999999999999998
No 344
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=54.07 E-value=23 Score=46.72 Aligned_cols=121 Identities=19% Similarity=0.275 Sum_probs=88.2
Q ss_pred CCchhhhhHHHHHhhhCCCC--CCCCCcchhhhhHhHhhcCCCCcccc--cccHHHHHHHHHHhhcCCccccccCCccch
Q 007571 4 GNPSKRRASILKFFRELPSQ--DDDGQVLPISGLWNTAMAHPNDPEFI--ELGIFECMAALIWKGLKNRRWLSHDQNIYI 79 (598)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~p~~~~~~--~lg~~~~~~~l~~~~~~~~~~~~~~~~~~~ 79 (598)
.||+.=.+.++.+-++|-.. +.+++..++.-|=..+-+.+++-.|. .-|++.=...++.. .+..+
T Consensus 6 ~~~~~~~~~v~~Lve~L~s~~ss~~~~~~Al~~Lr~Lak~~~enR~~Ia~~aGaIP~LV~lL~s-----------g~~~v 74 (2102)
T PLN03200 6 DDPDGTLASVAQCIEQLRAKSSSPQEKELTTARLLELAKTREEARKAIGSHSQAMPLLVSLLRS-----------GTLGA 74 (2102)
T ss_pred cCccchHHHHHHHHHHHHcccCCHHHHHHHHHHHHHHHhcChHHHHHHHHccCcHHHHHHHHcC-----------CCHHH
Confidence 48888899999999999866 44555567888888888888776666 35666655555532 22222
Q ss_pred hhhhhhhhhcccccHHHHHHHHHhcCCchHHHHHhcccchhhHHHHHHHHhhccccCC
Q 007571 80 PYYAAHIIGSYTMNMEEFAESAVHAGVIPPLVELLRGRLTWVEQRVAVRALGHLATYP 137 (598)
Q Consensus 80 ~yy~ah~~gsy~~~~~~~~~~av~~~~~~~l~~~~~~~~~wve~r~~~r~l~h~a~~~ 137 (598)
=--|+-+++.-... ++...+-+.+|+||||+++|+.- +..=|..|++||.+|++..
T Consensus 75 k~nAaaaL~nLS~~-e~nk~~Iv~~GaIppLV~LL~sG-s~eaKe~AA~AL~sLS~~~ 130 (2102)
T PLN03200 75 KVNAAAVLGVLCKE-EDLRVKVLLGGCIPPLLSLLKSG-SAEAQKAAAEAIYAVSSGG 130 (2102)
T ss_pred HHHHHHHHHHHhcC-HHHHHHHHHcCChHHHHHHHHCC-CHHHHHHHHHHHHHHHcCc
Confidence 22334455555544 67777888999999999999876 8888889999999999874
No 345
>KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only]
Probab=53.14 E-value=1.7e+02 Score=37.12 Aligned_cols=141 Identities=16% Similarity=0.079 Sum_probs=100.9
Q ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---chHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHh-----
Q 007571 385 QAAALVVKLEGNSLFSAGNISGAASKYSEALALCPMR---SKKERVVLYSNRAQCHLLMQQPLAAISDATRALCL----- 456 (598)
Q Consensus 385 ~~~A~~lKeeGN~lfk~GdY~eAIe~YskALel~P~~---~~~~~a~ly~NRA~cylKLgdyeeAI~D~~kALeL----- 456 (598)
.+.+..++..+..+.+.|++++|+..=.+|.-+.... ........|.|++.-.+..++...|+..+.+|+.+
T Consensus 970 ~~~~~~~~~La~l~~~~~d~~~Ai~~~~ka~ii~eR~~g~ds~~t~~~y~nlal~~f~~~~~~~al~~~~ra~~l~~Ls~ 1049 (1236)
T KOG1839|consen 970 PEVASKYRSLAKLSNRLGDNQEAIAQQRKACIISERVLGKDSPNTKLAYGNLALYEFAVKNLSGALKSLNRALKLKLLSS 1049 (1236)
T ss_pred hhHHHHHHHHHHHHhhhcchHHHHHhcccceeeechhccCCCHHHHHHhhHHHHHHHhccCccchhhhHHHHHHhhcccc
Confidence 3567788888999999999999999888876543221 22346888999999999999999999999999876
Q ss_pred ---CCCCCcCHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHhccCCCCchhhccCChHHHHHHHHHHHHHHHHHHHHHHHh
Q 007571 457 ---HNPLNRHAKSLWRRAQAYDMLALAKESLLDAILFINECSQSNDPDLSLRQNKVPDYAERLVKKQMRAAWLFREAAIK 533 (598)
Q Consensus 457 ---dP~~~~~~KAyyRRAqAy~~LGdy~EAl~d~~kALel~~k~~d~~~~~r~~Ki~~~ierlL~Kqk~a~~~f~eA~~k 533 (598)
.|. -.-..-..++.+..+++++-|+...+.|+....+---+ ..--.....-.+.+.+.....|+.+..+
T Consensus 1050 ge~hP~---~a~~~~nle~l~~~v~e~d~al~~le~A~a~~~~v~g~-----~~l~~~~~~~~~a~l~~s~~dfr~al~~ 1121 (1236)
T KOG1839|consen 1050 GEDHPP---TALSFINLELLLLGVEEADTALRYLESALAKNKKVLGP-----KELETALSYHALARLFESMKDFRNALEH 1121 (1236)
T ss_pred CCCCCc---hhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcCc-----cchhhhhHHHHHHHHHhhhHHHHHHHHH
Confidence 344 34445677888899999999999999999854432110 1112223344456666666777766555
No 346
>TIGR02710 CRISPR-associated protein, TIGR02710 family. Members of this family are found, exclusively in the vicinity of CRISPR repeats and other CRISPR-associated (cas) genes, in Methanothermobacter thermautotrophicus (Archaea), Thermus thermophilus (Deinococcus-Thermus), Chloroflexus aurantiacus (Chloroflexi), and Thermomicrobium roseum (Thermomicrobia).
Probab=52.99 E-value=2.3e+02 Score=31.52 Aligned_cols=62 Identities=8% Similarity=-0.144 Sum_probs=48.2
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHHH--cCChHHHHHHHH
Q 007571 390 VVKLEGNSLFSAGNISGAASKYSEALALCPMRSKKERVVLYSNRAQCHLL--MQQPLAAISDAT 451 (598)
Q Consensus 390 ~lKeeGN~lfk~GdY~eAIe~YskALel~P~~~~~~~a~ly~NRA~cylK--LgdyeeAI~D~~ 451 (598)
....++..+|+.++|..|...|.+++...+..........|.+++.+|.. .=+|++|....+
T Consensus 132 ~e~~~~r~l~n~~dy~aA~~~~~~L~~r~l~~~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~L~ 195 (380)
T TIGR02710 132 TEQGYARRAINAFDYLFAHARLETLLRRLLSAVNHTFYEAMIKLTRAYLHWDRFEHEEALDYLN 195 (380)
T ss_pred HHHHHHHHHHHhcChHHHHHHHHHHHhcccChhhhhHHHHHHHHHHHHHHHHccCHHHHHHHHh
Confidence 34446667999999999999999999886654344567888888888875 457788888777
No 347
>cd02682 MIT_AAA_Arch MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in mostly archaebacterial AAA-ATPases. The molecular function of the MIT domain is unclear.
Probab=52.98 E-value=83 Score=27.00 Aligned_cols=29 Identities=17% Similarity=0.032 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 007571 427 VVLYSNRAQCHLLMQQPLAAISDATRALC 455 (598)
Q Consensus 427 a~ly~NRA~cylKLgdyeeAI~D~~kALe 455 (598)
+.-|..+|.-+-+.|++.+||..|..+++
T Consensus 6 A~~~a~~AVe~D~~gr~~eAi~~Y~~aIe 34 (75)
T cd02682 6 ARKYAINAVKAEKEGNAEDAITNYKKAIE 34 (75)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 44555555555566666666665555543
No 348
>PF10373 EST1_DNA_bind: Est1 DNA/RNA binding domain; InterPro: IPR018834 Est1 is a protein which recruits or activates telomerase at the site of polymerisation [, ]. This is the DNA/RNA binding domain of EST1 []. ; PDB: 1YA0_B.
Probab=52.78 E-value=29 Score=35.04 Aligned_cols=45 Identities=11% Similarity=-0.066 Sum_probs=39.9
Q ss_pred HHHHHHHHHHhCCCCCcCHHHHHHHHHHHHHhhcHHHHHHHHHHHHHH
Q 007571 446 AISDATRALCLHNPLNRHAKSLWRRAQAYDMLALAKESLLDAILFINE 493 (598)
Q Consensus 446 AI~D~~kALeLdP~~~~~~KAyyRRAqAy~~LGdy~EAl~d~~kALel 493 (598)
|...|.+|+.+.|. +...|..+|......|+.=+|+=.|.+++-.
T Consensus 1 A~~~Y~~A~~l~P~---~G~p~nQLAvl~~~~~~~l~avy~y~Rsl~~ 45 (278)
T PF10373_consen 1 AERYYRKAIRLLPS---NGNPYNQLAVLASYQGDDLDAVYYYIRSLAV 45 (278)
T ss_dssp HHHHHHHHHHH-TT---BSHHHHHHHHHHHHTT-HHHHHHHHHHHHSS
T ss_pred CHHHHHHHHHhCCC---CCCcccchhhhhccccchHHHHHHHHHHHhc
Confidence 67899999999999 9999999999999999999999999999843
No 349
>PF07219 HemY_N: HemY protein N-terminus; InterPro: IPR010817 This entry represents the N terminus (approximately 150 residues) of bacterial HemY porphyrin biosynthesis proteins. These are membrane protein involved in a late step of protoheme IX synthesis [].
Probab=52.14 E-value=83 Score=28.15 Aligned_cols=55 Identities=15% Similarity=0.075 Sum_probs=43.9
Q ss_pred HHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHHHcCC
Q 007571 383 IKQAAALVVKLEGNSLFSAGNISGAASKYSEALALCPMRSKKERVVLYSNRAQCHLLMQQ 442 (598)
Q Consensus 383 e~~~~A~~lKeeGN~lfk~GdY~eAIe~YskALel~P~~~~~~~a~ly~NRA~cylKLgd 442 (598)
.+.+++.....+|-..+-.|||..|.+...++-+..+.. ...|.--|.+-..+||
T Consensus 54 rr~~ka~~al~~Gl~al~~G~~~~A~k~~~~a~~~~~~~-----~l~~L~AA~AA~~~gd 108 (108)
T PF07219_consen 54 RRRRKAQRALSRGLIALAEGDWQRAEKLLAKAAKLSDNP-----LLNYLLAARAAQAQGD 108 (108)
T ss_pred HHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCH-----HHHHHHHHHHHHHcCC
Confidence 356788889999999999999999999999998876665 6666666666666554
No 350
>KOG0549 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=52.13 E-value=1.1 Score=44.49 Aligned_cols=40 Identities=10% Similarity=0.013 Sum_probs=36.8
Q ss_pred CCccceehhhccccccccCCCC--CCCCccHHHHHHHHHHHh
Q 007571 328 KKLGDSIVNVLQDCIQLQGTVR--SSPSNRSKEQIEELLNSR 367 (598)
Q Consensus 328 ~k~GE~~~~~L~pdy~~g~~g~--~ip~~~tl~~~~ELl~~k 367 (598)
|=+||+-.++|.|+++||+.|. .||+++++.|.+|++...
T Consensus 135 MCvGEkRkl~IPp~LgYG~~G~~~~IP~~A~LiFdiELv~i~ 176 (188)
T KOG0549|consen 135 MCVGEKRKLIIPPHLGYGERGAPPKIPGDAVLIFDIELVKIE 176 (188)
T ss_pred hCcccceEEecCccccCccCCCCCCCCCCeeEEEEEEEEEee
Confidence 8899999999999999999997 799999999999988764
No 351
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=51.87 E-value=58 Score=24.99 Aligned_cols=25 Identities=12% Similarity=-0.065 Sum_probs=23.5
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHH
Q 007571 431 SNRAQCHLLMQQPLAAISDATRALC 455 (598)
Q Consensus 431 ~NRA~cylKLgdyeeAI~D~~kALe 455 (598)
.++|.+|+.+|+++.|..-.+.++.
T Consensus 3 LdLA~ayie~Gd~e~Ar~lL~evl~ 27 (44)
T TIGR03504 3 LDLARAYIEMGDLEGARELLEEVIE 27 (44)
T ss_pred hHHHHHHHHcCChHHHHHHHHHHHH
Confidence 6899999999999999999999995
No 352
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=51.52 E-value=2.6e+02 Score=30.58 Aligned_cols=78 Identities=14% Similarity=0.026 Sum_probs=63.3
Q ss_pred HHhCCCCchHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHH---------h-----CCC------------CCcCHHHHH
Q 007571 415 LALCPMRSKKERVVLYSNRAQCHLLMQQPLAAISDATRALC---------L-----HNP------------LNRHAKSLW 468 (598)
Q Consensus 415 Lel~P~~~~~~~a~ly~NRA~cylKLgdyeeAI~D~~kALe---------L-----dP~------------~~~~~KAyy 468 (598)
|...|.. +..+..++.++..+|++..|-...++||= . ++. +.....+++
T Consensus 33 l~~~PyH-----idtLlqls~v~~~~gd~~~A~~lleRALf~~e~~~~~~F~~~~~~~~~g~~rL~~~~~eNR~fflal~ 107 (360)
T PF04910_consen 33 LQKNPYH-----IDTLLQLSEVYRQQGDHAQANDLLERALFAFERAFHPSFSPFRSNLTSGNCRLDYRRPENRQFFLALF 107 (360)
T ss_pred HHHCCCc-----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccCccccCCccccchHHHHHHH
Confidence 4556777 88899999999999999999999999872 1 111 011357999
Q ss_pred HHHHHHHHhhcHHHHHHHHHHHHHHhccC
Q 007571 469 RRAQAYDMLALAKESLLDAILFINECSQS 497 (598)
Q Consensus 469 RRAqAy~~LGdy~EAl~d~~kALel~~k~ 497 (598)
|..+.+.+.|-+.-|++.++-.+.+.|.+
T Consensus 108 r~i~~L~~RG~~rTAlE~~KlLlsLdp~~ 136 (360)
T PF04910_consen 108 RYIQSLGRRGCWRTALEWCKLLLSLDPDE 136 (360)
T ss_pred HHHHHHHhcCcHHHHHHHHHHHHhcCCCC
Confidence 99999999999999999999999998873
No 353
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=51.51 E-value=1.2e+02 Score=34.79 Aligned_cols=100 Identities=18% Similarity=0.102 Sum_probs=75.3
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCcCHHH
Q 007571 387 AALVVKLEGNSLFSAGNISGAASKYSEALALCPMRSKKERVVLYSNRAQCHLLMQQPLAAISDATRALCLHNPLNRHAKS 466 (598)
Q Consensus 387 ~A~~lKeeGN~lfk~GdY~eAIe~YskALel~P~~~~~~~a~ly~NRA~cylKLgdyeeAI~D~~kALeLdP~~~~~~KA 466 (598)
.+...-..-......|+...|......++.-.|.. +..-.-++..+..+|+|+.|.++..-+=..-.. -.++
T Consensus 288 ~~~~~~~si~k~~~~gd~~aas~~~~~~lr~~~~~-----p~~i~l~~~i~~~lg~ye~~~~~~s~~~~~~~s---~~~~ 359 (831)
T PRK15180 288 QIREITLSITKQLADGDIIAASQQLFAALRNQQQD-----PVLIQLRSVIFSHLGYYEQAYQDISDVEKIIGT---TDST 359 (831)
T ss_pred chhHHHHHHHHHhhccCHHHHHHHHHHHHHhCCCC-----chhhHHHHHHHHHhhhHHHHHHHhhchhhhhcC---CchH
Confidence 34444444455678899999999999999999887 677777899999999999999887766554444 4567
Q ss_pred HHHHHHHHHHhhcHHHHHHHHHHHHHHh
Q 007571 467 LWRRAQAYDMLALAKESLLDAILFINEC 494 (598)
Q Consensus 467 yyRRAqAy~~LGdy~EAl~d~~kALel~ 494 (598)
..-+-..+..+|++++|+......+...
T Consensus 360 ~~~~~r~~~~l~r~~~a~s~a~~~l~~e 387 (831)
T PRK15180 360 LRCRLRSLHGLARWREALSTAEMMLSNE 387 (831)
T ss_pred HHHHHHhhhchhhHHHHHHHHHHHhccc
Confidence 7777778888888888876665555443
No 354
>PHA02537 M terminase endonuclease subunit; Provisional
Probab=51.32 E-value=1.6e+02 Score=30.55 Aligned_cols=96 Identities=11% Similarity=-0.078 Sum_probs=61.3
Q ss_pred HHHcCCHHHHHHHHHHHHHhC---CCCc----hHHHHHHHHHHHHHHHHcCC-hHHHHHHHHHHHHhC---CCCCcCHHH
Q 007571 398 LFSAGNISGAASKYSEALALC---PMRS----KKERVVLYSNRAQCHLLMQQ-PLAAISDATRALCLH---NPLNRHAKS 466 (598)
Q Consensus 398 lfk~GdY~eAIe~YskALel~---P~~~----~~~~a~ly~NRA~cylKLgd-yeeAI~D~~kALeLd---P~~~~~~KA 466 (598)
+|..|+|+.|+..-..||+.. |+.. ....+.-..+-|....+.|+ ++-........|.-+ |+ -++|
T Consensus 93 ~~D~Gd~~~AL~ia~yAI~~~l~~Pd~f~R~~~t~vaeev~~~A~~~~~ag~~~e~~~~~~~~~l~~~~dmpd---~vrA 169 (230)
T PHA02537 93 RFDIGDFDGALEIAEYALEHGLTMPDQFRRTLANFVAEEVANAALKAASAGESVEPYFLRVFLDLTTEWDMPD---EVRA 169 (230)
T ss_pred eeeccCHHHHHHHHHHHHHcCCCCCccccCCchHHHHHHHHHHHHHHHHcCCCCChHHHHHHHHHHhcCCCCh---HHHH
Confidence 567899999999999999974 4432 23456666677777777776 333332222222111 33 4444
Q ss_pred HHHH--HHHHH---------HhhcHHHHHHHHHHHHHHhcc
Q 007571 467 LWRR--AQAYD---------MLALAKESLLDAILFINECSQ 496 (598)
Q Consensus 467 yyRR--AqAy~---------~LGdy~EAl~d~~kALel~~k 496 (598)
-+.+ |.+++ ..++...|+..+++|+++.++
T Consensus 170 Kl~K~~G~~llr~~~g~~~~d~~~l~~Al~~L~rA~~l~~k 210 (230)
T PHA02537 170 KLYKAAGYLLLRNEKGEPIGDAETLQLALALLQRAFQLNDK 210 (230)
T ss_pred HHHHHHHHHHhhcccCCCccCcccHHHHHHHHHHHHHhCCC
Confidence 4444 55442 345778999999999999775
No 355
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=50.80 E-value=1.2e+02 Score=34.65 Aligned_cols=60 Identities=13% Similarity=0.058 Sum_probs=51.0
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHHHcCChHHHHHHHHH
Q 007571 387 AALVVKLEGNSLFSAGNISGAASKYSEALALCPMRSKKERVVLYSNRAQCHLLMQQPLAAISDATR 452 (598)
Q Consensus 387 ~A~~lKeeGN~lfk~GdY~eAIe~YskALel~P~~~~~~~a~ly~NRA~cylKLgdyeeAI~D~~k 452 (598)
......+.+.-+|.+|+|.++..+-.-..++.|. +.+|--+|.|.+..++|.+|......
T Consensus 461 eian~LaDAEyLysqgey~kc~~ys~WL~~iaPS------~~~~RLlGl~l~e~k~Y~eA~~~l~~ 520 (549)
T PF07079_consen 461 EIANFLADAEYLYSQGEYHKCYLYSSWLTKIAPS------PQAYRLLGLCLMENKRYQEAWEYLQK 520 (549)
T ss_pred HHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCc------HHHHHHHHHHHHHHhhHHHHHHHHHh
Confidence 3555667777889999999999888888899995 78899999999999999999986644
No 356
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=50.34 E-value=1.7e+02 Score=31.26 Aligned_cols=80 Identities=8% Similarity=-0.048 Sum_probs=63.7
Q ss_pred HHHHHHHHhCCCCchHHHHHHHHHHHHHHHHcCC------------hHHHHHHHHHHHHhCCCCCcCHHHHHHHHHHHHH
Q 007571 409 SKYSEALALCPMRSKKERVVLYSNRAQCHLLMQQ------------PLAAISDATRALCLHNPLNRHAKSLWRRAQAYDM 476 (598)
Q Consensus 409 e~YskALel~P~~~~~~~a~ly~NRA~cylKLgd------------yeeAI~D~~kALeLdP~~~~~~KAyyRRAqAy~~ 476 (598)
..|++.++-+|.+ ..+|.....-.-++-. .+.-+..+++||+.+|+ +.+.+..+-.+...
T Consensus 6 ~el~~~v~~~P~d-----i~~Wl~li~~Qd~~~~~~~~~~~~~~a~~E~klsilerAL~~np~---~~~L~l~~l~~~~~ 77 (321)
T PF08424_consen 6 AELNRRVRENPHD-----IEAWLELIEFQDELFRLQSSSKAERRALAERKLSILERALKHNPD---SERLLLGYLEEGEK 77 (321)
T ss_pred HHHHHHHHhCccc-----HHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHHHHHhCCC---CHHHHHHHHHHHHH
Confidence 4578888899998 6666666554433322 46778899999999999 99999888888888
Q ss_pred hhcHHHHHHHHHHHHHHhcc
Q 007571 477 LALAKESLLDAILFINECSQ 496 (598)
Q Consensus 477 LGdy~EAl~d~~kALel~~k 496 (598)
+.+.+.-..-+++++...++
T Consensus 78 ~~~~~~l~~~we~~l~~~~~ 97 (321)
T PF08424_consen 78 VWDSEKLAKKWEELLFKNPG 97 (321)
T ss_pred hCCHHHHHHHHHHHHHHCCC
Confidence 88888888889999988775
No 357
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=50.31 E-value=63 Score=37.16 Aligned_cols=89 Identities=11% Similarity=-0.070 Sum_probs=65.5
Q ss_pred HcCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHHHcC-----ChHHHHHHHHHHHHhCCCCCcCHHHHHHHHHHH
Q 007571 400 SAGNISGAASKYSEALALCPMRSKKERVVLYSNRAQCHLLMQ-----QPLAAISDATRALCLHNPLNRHAKSLWRRAQAY 474 (598)
Q Consensus 400 k~GdY~eAIe~YskALel~P~~~~~~~a~ly~NRA~cylKLg-----dyeeAI~D~~kALeLdP~~~~~~KAyyRRAqAy 474 (598)
...|.+.|+.+|..|.+-.........+.+...+|.+|++-. ++..|+..+.+|-.+. ++.+.|++|.++
T Consensus 261 ~~~d~e~a~~~l~~aa~~~~~~a~~~~~~a~~~lg~~Y~~g~~~~~~d~~~A~~~~~~aA~~g-----~~~a~~~lg~~~ 335 (552)
T KOG1550|consen 261 VTQDLESAIEYLKLAAESFKKAATKGLPPAQYGLGRLYLQGLGVEKIDYEKALKLYTKAAELG-----NPDAQYLLGVLY 335 (552)
T ss_pred ccccHHHHHHHHHHHHHHHHHHHhhcCCccccHHHHHHhcCCCCccccHHHHHHHHHHHHhcC-----CchHHHHHHHHH
Confidence 346899999999999872000000001446777999998843 7888999999998886 458999999999
Q ss_pred HHhh---cHHHHHHHHHHHHHH
Q 007571 475 DMLA---LAKESLLDAILFINE 493 (598)
Q Consensus 475 ~~LG---dy~EAl~d~~kALel 493 (598)
..-. ++..|...|..|.+.
T Consensus 336 ~~g~~~~d~~~A~~yy~~Aa~~ 357 (552)
T KOG1550|consen 336 ETGTKERDYRRAFEYYSLAAKA 357 (552)
T ss_pred HcCCccccHHHHHHHHHHHHHc
Confidence 8876 578899888888654
No 358
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=49.72 E-value=2.6e+02 Score=28.57 Aligned_cols=98 Identities=12% Similarity=-0.047 Sum_probs=70.6
Q ss_pred HHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHHHc----C---ChHHHHHHHHHHHHh
Q 007571 388 ALVVKLEGNSLFS----AGNISGAASKYSEALALCPMRSKKERVVLYSNRAQCHLLM----Q---QPLAAISDATRALCL 456 (598)
Q Consensus 388 A~~lKeeGN~lfk----~GdY~eAIe~YskALel~P~~~~~~~a~ly~NRA~cylKL----g---dyeeAI~D~~kALeL 456 (598)
+......|..++. ..++.+|...|.+|.+..-... .....+++.+|..- + +...|+..+.+|-..
T Consensus 109 ~~a~~~lg~~~~~G~gv~~d~~~A~~~~~~Aa~~g~~~a----~~~~~~l~~~~~~g~~~~~~~~~~~~A~~~~~~aa~~ 184 (292)
T COG0790 109 AEALFNLGLMYANGRGVPLDLVKALKYYEKAAKLGNVEA----ALAMYRLGLAYLSGLQALAVAYDDKKALYLYRKAAEL 184 (292)
T ss_pred HHHHHhHHHHHhcCCCcccCHHHHHHHHHHHHHcCChhH----HHHHHHHHHHHHcChhhhcccHHHHhHHHHHHHHHHh
Confidence 3345556776665 4599999999999998854321 23466677777653 1 234788888888776
Q ss_pred CCCCCcCHHHHHHHHHHHHH----hhcHHHHHHHHHHHHHHh
Q 007571 457 HNPLNRHAKSLWRRAQAYDM----LALAKESLLDAILFINEC 494 (598)
Q Consensus 457 dP~~~~~~KAyyRRAqAy~~----LGdy~EAl~d~~kALel~ 494 (598)
. ++.+.+++|..|.. -.++.+|...|.++-+.-
T Consensus 185 ~-----~~~a~~~lg~~y~~G~Gv~~d~~~A~~wy~~Aa~~g 221 (292)
T COG0790 185 G-----NPDAQLLLGRMYEKGLGVPRDLKKAFRWYKKAAEQG 221 (292)
T ss_pred c-----CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCC
Confidence 5 66899999977754 348899999999998763
No 359
>cd02683 MIT_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with unknown function, co-occuring with an as yet undescribed domain. The molecular function of the MIT domain is unclear.
Probab=49.52 E-value=80 Score=26.93 Aligned_cols=32 Identities=25% Similarity=0.102 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHHhhcHHHHHHHHHHHHHHhcc
Q 007571 465 KSLWRRAQAYDMLALAKESLLDAILFINECSQ 496 (598)
Q Consensus 465 KAyyRRAqAy~~LGdy~EAl~d~~kALel~~k 496 (598)
..+..+|......|+|++|+..|..+|+.+..
T Consensus 7 ~~l~~~Ave~D~~g~y~eAl~~Y~~aie~l~~ 38 (77)
T cd02683 7 KEVLKRAVELDQEGRFQEALVCYQEGIDLLMQ 38 (77)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHHHH
Confidence 34455566666667788887777777776653
No 360
>KOG0530 consensus Protein farnesyltransferase, alpha subunit/protein geranylgeranyltransferase type I, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=48.70 E-value=1e+02 Score=32.83 Aligned_cols=83 Identities=13% Similarity=0.063 Sum_probs=47.9
Q ss_pred HHHHHHHHHhCCCCchHHHHHHHHHHHHHHHHcCChH-HHHHHHHHHHHhCCCCCcCHHHHHHHHHHHHHhhcHHHHHHH
Q 007571 408 ASKYSEALALCPMRSKKERVVLYSNRAQCHLLMQQPL-AAISDATRALCLHNPLNRHAKSLWRRAQAYDMLALAKESLLD 486 (598)
Q Consensus 408 Ie~YskALel~P~~~~~~~a~ly~NRA~cylKLgdye-eAI~D~~kALeLdP~~~~~~KAyyRRAqAy~~LGdy~EAl~d 486 (598)
++..++.++-+|.+ ..++.-|-...-.+|++. .-+..+..+|..|.. |..|+-.|--+....+.|+.-+..
T Consensus 98 l~~l~eI~e~npKN-----YQvWHHRr~ive~l~d~s~rELef~~~~l~~DaK---NYHaWshRqW~~r~F~~~~~EL~y 169 (318)
T KOG0530|consen 98 LEYLDEIIEDNPKN-----YQVWHHRRVIVELLGDPSFRELEFTKLMLDDDAK---NYHAWSHRQWVLRFFKDYEDELAY 169 (318)
T ss_pred HHHHHHHHHhCccc-----hhHHHHHHHHHHHhcCcccchHHHHHHHHhcccc---chhhhHHHHHHHHHHhhHHHHHHH
Confidence 34444444444444 455555555555556655 556666666666666 666666666666666666666666
Q ss_pred HHHHHHHhccCC
Q 007571 487 AILFINECSQSN 498 (598)
Q Consensus 487 ~~kALel~~k~~ 498 (598)
....|+....++
T Consensus 170 ~~~Lle~Di~NN 181 (318)
T KOG0530|consen 170 ADELLEEDIRNN 181 (318)
T ss_pred HHHHHHHhhhcc
Confidence 666666554433
No 361
>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]
Probab=48.14 E-value=1.3e+02 Score=35.24 Aligned_cols=92 Identities=12% Similarity=0.007 Sum_probs=70.4
Q ss_pred HHcCCHHH-HHHHHHHHHHhCCCCchHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCcCHHHHHHHHHHHHHh
Q 007571 399 FSAGNISG-AASKYSEALALCPMRSKKERVVLYSNRAQCHLLMQQPLAAISDATRALCLHNPLNRHAKSLWRRAQAYDML 477 (598)
Q Consensus 399 fk~GdY~e-AIe~YskALel~P~~~~~~~a~ly~NRA~cylKLgdyeeAI~D~~kALeLdP~~~~~~KAyyRRAqAy~~L 477 (598)
+..+.... |+..|...+.++|.+ ........ ++..+.-++....++.....++..+|+ +.+++..+|.+....
T Consensus 41 l~~~~~~~~~~~a~~~~~~~~~~~--~~llla~~-lsi~~~~~~~~~~~~~~~~~~l~~~~~---~~~~~~~L~~ale~~ 114 (620)
T COG3914 41 LNAEGLQALAIYALLLGIAINDVN--PELLLAAF-LSILLAPLADSTLAFLAKRIPLSVNPE---NCPAVQNLAAALELD 114 (620)
T ss_pred hcccCchhHHHHHHHccCccCCCC--HHHHHHHH-HHhhccccccchhHHHHHhhhHhcCcc---cchHHHHHHHHHHHh
Confidence 34444444 777777777777776 11222222 788888899999999999999999999 999999999999999
Q ss_pred hcHHHHHHHHHH-HHHHhcc
Q 007571 478 ALAKESLLDAIL-FINECSQ 496 (598)
Q Consensus 478 Gdy~EAl~d~~k-ALel~~k 496 (598)
|..-.++.++.. +....++
T Consensus 115 ~~~~~~~~~~~~~a~~~~~~ 134 (620)
T COG3914 115 GLQFLALADISEIAEWLSPD 134 (620)
T ss_pred hhHHHHHHHHHHHHHhcCcc
Confidence 998888887777 6666655
No 362
>cd02677 MIT_SNX15 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This MIT domain sub-family is found in sorting nexin 15 and related proteins. The molecular function of the MIT domain is unclear.
Probab=47.59 E-value=35 Score=29.00 Aligned_cols=32 Identities=16% Similarity=0.055 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 007571 386 AAALVVKLEGNSLFSAGNISGAASKYSEALAL 417 (598)
Q Consensus 386 ~~A~~lKeeGN~lfk~GdY~eAIe~YskALel 417 (598)
..|..+..+|...=+.|+|++|..+|.+||+.
T Consensus 4 ~~A~~l~~~Ave~d~~~~y~eA~~~Y~~~i~~ 35 (75)
T cd02677 4 EQAAELIRLALEKEEEGDYEAAFEFYRAGVDL 35 (75)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 45666777777888889999999999999875
No 363
>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function.
Probab=47.56 E-value=2.3e+02 Score=26.16 Aligned_cols=64 Identities=9% Similarity=-0.078 Sum_probs=49.2
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHhCCCCCcCHHHHHHHHHHHHHhhc-----------HHHHHHHHHHHHHHhcc
Q 007571 433 RAQCHLLMQQPLAAISDATRALCLHNPLNRHAKSLWRRAQAYDMLAL-----------AKESLLDAILFINECSQ 496 (598)
Q Consensus 433 RA~cylKLgdyeeAI~D~~kALeLdP~~~~~~KAyyRRAqAy~~LGd-----------y~EAl~d~~kALel~~k 496 (598)
+|.-++..|++-+|++..+..+...++.....-.+...|..+..+.. ...|++.|.++..+.|.
T Consensus 2 ~A~~~~~rGnhiKAL~iied~i~~h~~~~~~~~lh~~QG~if~~lA~~ten~d~k~~yLl~sve~~s~a~~Lsp~ 76 (111)
T PF04781_consen 2 KAKDYFARGNHIKALEIIEDLISRHGEDESSWLLHRLQGTIFYKLAKKTENPDVKFRYLLGSVECFSRAVELSPD 76 (111)
T ss_pred hHHHHHHccCHHHHHHHHHHHHHHccCCCchHHHHHHHhHHHHHHHHhccCchHHHHHHHHhHHHHHHHhccChh
Confidence 67889999999999999999999988731112455566878777654 46688888888888775
No 364
>COG5091 SGT1 Suppressor of G2 allele of skp1 and related proteins [General function prediction only]
Probab=45.11 E-value=52 Score=35.03 Aligned_cols=119 Identities=14% Similarity=-0.027 Sum_probs=75.9
Q ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCch------HHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC---CcCHHHH
Q 007571 397 SLFSAGNISGAASKYSEALALCPMRSK------KERVVLYSNRAQCHLLMQQPLAAISDATRALCLHNPL---NRHAKSL 467 (598)
Q Consensus 397 ~lfk~GdY~eAIe~YskALel~P~~~~------~~~a~ly~NRA~cylKLgdyeeAI~D~~kALeLdP~~---~~~~KAy 467 (598)
.++..++--.|+..|...+.-.|.+.. .-.-.+|..-..|+. --....|.+..++||-+.... ..-.-.-
T Consensus 4 ~L~D~~e~L~~L~~~~~~~~~~~~NL~~l~~~a~~lEk~~~~Fs~~~s-~~~~~n~~e~~d~ALm~Ae~r~D~~~IG~~~ 82 (368)
T COG5091 4 ALYDEKEPLKALHLYDEILKGSPTNLTALIFKAACLEKLYFGFSDWHS-DATMENAKELLDKALMTAEGRGDRSKIGLVN 82 (368)
T ss_pred chhcccchHHHhhhhhhhhccCCcceeEEeehhhhHHHHHhhhhhhhc-ccChhhHHHHHHHHHHhhhccCCcceeeeeh
Confidence 455666677788888888877777611 011122222222221 224678899999998664331 1123456
Q ss_pred HHHHHHHHHhhcHHHHHHHHHHHHHHhccCCCCchhhccCChHHHHHHHHHHHHHH
Q 007571 468 WRRAQAYDMLALAKESLLDAILFINECSQSNDPDLSLRQNKVPDYAERLVKKQMRA 523 (598)
Q Consensus 468 yRRAqAy~~LGdy~EAl~d~~kALel~~k~~d~~~~~r~~Ki~~~ierlL~Kqk~a 523 (598)
+|++.+|+.+.+|+.|..+|.+|+++..++. -++.+..++.+|.+....
T Consensus 83 ~~~~v~~~~ik~Ye~a~~~F~~A~~~~~~d~-------L~~We~rLet~L~~~~kk 131 (368)
T COG5091 83 FRYFVHFFNIKDYELAQSYFKKAKNLYVDDT-------LPLWEDRLETKLNKKNKK 131 (368)
T ss_pred hhhHHHhhhHHHHHHHHHHHHHHHHHhhccc-------chHHHHHHHHHHhHhhHh
Confidence 8899999999999999999999999976633 234555566665544433
No 365
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=43.31 E-value=2.6e+02 Score=28.30 Aligned_cols=103 Identities=12% Similarity=-0.083 Sum_probs=68.7
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCcCHHHH
Q 007571 388 ALVVKLEGNSLFSAGNISGAASKYSEALALCPMRSKKERVVLYSNRAQCHLLMQQPLAAISDATRALCLHNPLNRHAKSL 467 (598)
Q Consensus 388 A~~lKeeGN~lfk~GdY~eAIe~YskALel~P~~~~~~~a~ly~NRA~cylKLgdyeeAI~D~~kALeLdP~~~~~~KAy 467 (598)
.......|.....+|+-..|+..|+++-.-.|.. ...+-.+...-|..+.-.|.|++...-.+- |.-+.++. ...+-
T Consensus 94 vLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P-~~~rd~ARlraa~lLvD~gsy~dV~srvep-La~d~n~m-R~sAr 170 (221)
T COG4649 94 VLARMRAATLLAQKGDTAAAVAAFDEIAADTSIP-QIGRDLARLRAAYLLVDNGSYDDVSSRVEP-LAGDGNPM-RHSAR 170 (221)
T ss_pred HHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCc-chhhHHHHHHHHHHHhccccHHHHHHHhhh-ccCCCChh-HHHHH
Confidence 4456677888899999999999999987765542 223344455455566677888876654432 22222200 23344
Q ss_pred HHHHHHHHHhhcHHHHHHHHHHHHHH
Q 007571 468 WRRAQAYDMLALAKESLLDAILFINE 493 (598)
Q Consensus 468 yRRAqAy~~LGdy~EAl~d~~kALel 493 (598)
--+|.+-++-|+|..|...|....+-
T Consensus 171 EALglAa~kagd~a~A~~~F~qia~D 196 (221)
T COG4649 171 EALGLAAYKAGDFAKAKSWFVQIAND 196 (221)
T ss_pred HHHhHHHHhccchHHHHHHHHHHHcc
Confidence 44678888899999999999888763
No 366
>KOG4814 consensus Uncharacterized conserved protein [Function unknown]
Probab=43.22 E-value=1.3e+02 Score=35.75 Aligned_cols=71 Identities=17% Similarity=-0.077 Sum_probs=60.5
Q ss_pred HHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC---CcCHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHhcc
Q 007571 426 RVVLYSNRAQCHLLMQQPLAAISDATRALCLHNPL---NRHAKSLWRRAQAYDMLALAKESLLDAILFINECSQ 496 (598)
Q Consensus 426 ~a~ly~NRA~cylKLgdyeeAI~D~~kALeLdP~~---~~~~KAyyRRAqAy~~LGdy~EAl~d~~kALel~~k 496 (598)
...++-|-|.-++++++|..+++.|...+..-|.. ....|....++.||+.+.+.+.|++.++.|-+..+.
T Consensus 353 iH~iLWn~A~~~F~~~~Y~~s~~~y~~Sl~~i~~D~~~~~FaK~qR~l~~CYL~L~QLD~A~E~~~EAE~~d~~ 426 (872)
T KOG4814|consen 353 IHTLLWNTAKKLFKMEKYVVSIRFYKLSLKDIISDNYSDRFAKIQRALQVCYLKLEQLDNAVEVYQEAEEVDRQ 426 (872)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhccc
Confidence 35677889999999999999999999999876653 125788888899999999999999999999888654
No 367
>PF02064 MAS20: MAS20 protein import receptor; InterPro: IPR002056 Virtually all mitochondrial precursors are imported via the same mechanism []: precursors first bind to receptors on the mitochondrial surface, then insert into the translocation channel in the outer membrane. Many outer-membrane proteins participate in the early stages of import, four of which (MAS20, MAS22, MAS37 and MAS70) are components of the receptor. MAS20, which forms a subcomplex with MAS22, seems to interact with most or all mitochondrial precursors, suggesting that the protein binds directly to mitochondrial targeting sequences. The MAS37 and MAS70 components also form a subcomplex, the two subcomplexes possibly binding via their trans- membrane (TM) regions - the TM region of MAS70 promotes oligomerisation of attatched protein domains and shares sequence similarity with the TM region of MAS20 []. MAS20 is also known as TOM20.; GO: 0006605 protein targeting, 0006886 intracellular protein transport, 0005742 mitochondrial outer membrane translocase complex; PDB: 3AX3_A 3AWR_B 2V1S_A 3AX5_C 3AX2_C 1OM2_A 2V1T_B.
Probab=43.11 E-value=78 Score=29.56 Aligned_cols=41 Identities=24% Similarity=0.344 Sum_probs=33.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 007571 381 LHIKQAAALVVKLEGNSLFSAGNISGAASKYSEALALCPMR 421 (598)
Q Consensus 381 lee~~~~A~~lKeeGN~lfk~GdY~eAIe~YskALel~P~~ 421 (598)
.++...--..-.+.|..+..+|++.+|+.++-+||..+|..
T Consensus 56 ~~~~e~~Fl~qV~lGE~L~~~G~~~~aa~hf~nAl~V~~qP 96 (121)
T PF02064_consen 56 PEEMERFFLQQVQLGEQLLAQGDYEEAAEHFYNALKVCPQP 96 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTSSSH
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCH
Confidence 33445556667789999999999999999999999999985
No 368
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B ....
Probab=42.77 E-value=28 Score=26.73 Aligned_cols=49 Identities=29% Similarity=0.382 Sum_probs=33.7
Q ss_pred hhhhhhcccccHHHHHHHHHhcCCchHHHHHhcccchhhHHHHHHHHhhcc
Q 007571 83 AAHIIGSYTMNMEEFAESAVHAGVIPPLVELLRGRLTWVEQRVAVRALGHL 133 (598)
Q Consensus 83 ~ah~~gsy~~~~~~~~~~av~~~~~~~l~~~~~~~~~wve~r~~~r~l~h~ 133 (598)
|+..||.--=...+.. .-....++|.|+.+|+-.=.=| +..|++|||.|
T Consensus 7 A~~aLg~l~~~~~~~~-~~~~~~~~~~L~~~L~d~~~~V-R~~A~~aLg~l 55 (55)
T PF13513_consen 7 AAWALGRLAEGCPELL-QPYLPELLPALIPLLQDDDDSV-RAAAAWALGNL 55 (55)
T ss_dssp HHHHHHCTTTTTHHHH-HHHHHHHHHHHHHHTTSSSHHH-HHHHHHHHHCH
T ss_pred HHHHHhhHhcccHHHH-HHHHHHHHHHHHHHHcCCCHHH-HHHHHHHHhcC
Confidence 5667776222223333 3366789999999998877766 77889999864
No 369
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=42.40 E-value=4.2e+02 Score=30.83 Aligned_cols=109 Identities=13% Similarity=-0.011 Sum_probs=79.1
Q ss_pred HHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHhCCCC-chHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC-CCcC
Q 007571 387 AALVVKLEGNSLF-SAGNISGAASKYSEALALCPMR-SKKERVVLYSNRAQCHLLMQQPLAAISDATRALCLHNP-LNRH 463 (598)
Q Consensus 387 ~A~~lKeeGN~lf-k~GdY~eAIe~YskALel~P~~-~~~~~a~ly~NRA~cylKLgdyeeAI~D~~kALeLdP~-~~~~ 463 (598)
++......|..++ ...+++.|....+||+.++... ..+.+..+.+-++.+|.+.+... |+..++++|+.--+ ....
T Consensus 58 ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~k~~~~~ll~~i~~~~~~~~-a~~~l~~~I~~~~~~~~~~ 136 (608)
T PF10345_consen 58 EARVRLRLASILLEETENLDLAETYLEKAILLCERHRLTDLKFRCQFLLARIYFKTNPKA-ALKNLDKAIEDSETYGHSA 136 (608)
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhcCHHH-HHHHHHHHHHHHhccCchh
Confidence 5777777888887 6779999999999999987542 23445666666789999888777 99999999976433 1113
Q ss_pred HHHHHHHHHHHH--HhhcHHHHHHHHHHHHHHhcc
Q 007571 464 AKSLWRRAQAYD--MLALAKESLLDAILFINECSQ 496 (598)
Q Consensus 464 ~KAyyRRAqAy~--~LGdy~EAl~d~~kALel~~k 496 (598)
..-.||.-++.. ..+++..|+..++........
T Consensus 137 w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~ 171 (608)
T PF10345_consen 137 WYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQ 171 (608)
T ss_pred HHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhh
Confidence 444555543322 237999999999999888753
No 370
>KOG3783 consensus Uncharacterized conserved protein [Function unknown]
Probab=40.91 E-value=2.2e+02 Score=32.97 Aligned_cols=100 Identities=15% Similarity=-0.017 Sum_probs=73.6
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCcCHHHH
Q 007571 388 ALVVKLEGNSLFSAGNISGAASKYSEALALCPMRSKKERVVLYSNRAQCHLLMQQPLAAISDATRALCLHNPLNRHAKSL 467 (598)
Q Consensus 388 A~~lKeeGN~lfk~GdY~eAIe~YskALel~P~~~~~~~a~ly~NRA~cylKLgdyeeAI~D~~kALeLdP~~~~~~KAy 467 (598)
+.-+..++..+...|+-+.|+..++.+++ + ..++....++.-+|.++.-+.+|..|-.++.....++ + +.+|+
T Consensus 267 a~wll~~ar~l~~~g~~eaa~~~~~~~v~--~-~~kQ~~~l~~fE~aw~~v~~~~~~~aad~~~~L~des-d---WS~a~ 339 (546)
T KOG3783|consen 267 ALWLLMEARILSIKGNSEAAIDMESLSIP--I-RMKQVKSLMVFERAWLSVGQHQYSRAADSFDLLRDES-D---WSHAF 339 (546)
T ss_pred ccHHHHHHHHHHHcccHHHHHHHHHhccc--H-HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhh-h---hhHHH
Confidence 45566777778888888999999999988 3 3467789999999999999999999999998877664 4 77887
Q ss_pred HHHH--HHH--------HHhhcHHHHHHHHHHHHHHh
Q 007571 468 WRRA--QAY--------DMLALAKESLLDAILFINEC 494 (598)
Q Consensus 468 yRRA--qAy--------~~LGdy~EAl~d~~kALel~ 494 (598)
|.-= -|+ ...|+-+.|-..++...++.
T Consensus 340 Y~Yfa~cc~l~~~~~~q~~~~ne~~a~~~~k~~~~l~ 376 (546)
T KOG3783|consen 340 YTYFAGCCLLQNWEVNQGAGGNEEKAQLYFKVGEELL 376 (546)
T ss_pred HHHHHHHHHhccHHHHHhcccchhHHHHHHHHHHHHH
Confidence 7643 333 22445566655555554443
No 371
>KOG2300 consensus Uncharacterized conserved protein [Function unknown]
Probab=40.82 E-value=2.9e+02 Score=31.96 Aligned_cols=99 Identities=19% Similarity=0.013 Sum_probs=78.8
Q ss_pred HHHHHHHHHHHH-HHcCCHHHHHHHHHHHHHhC---CCCchHHHHHHHHHHHHHHHHcC-ChHHHHHHHHHHHHhCCCC-
Q 007571 387 AALVVKLEGNSL-FSAGNISGAASKYSEALALC---PMRSKKERVVLYSNRAQCHLLMQ-QPLAAISDATRALCLHNPL- 460 (598)
Q Consensus 387 ~A~~lKeeGN~l-fk~GdY~eAIe~YskALel~---P~~~~~~~a~ly~NRA~cylKLg-dyeeAI~D~~kALeLdP~~- 460 (598)
+|....+.|..+ +-..+++.|-.+.++|..+. |+. -+.....++-+|.+|.... .+..|....++||++..+.
T Consensus 45 eart~LqLg~lL~~yT~N~elAksHLekA~~i~~~ip~f-ydvKf~a~SlLa~lh~~~~~s~~~~KalLrkaielsq~~p 123 (629)
T KOG2300|consen 45 EARTHLQLGALLLRYTKNVELAKSHLEKAWLISKSIPSF-YDVKFQAASLLAHLHHQLAQSFPPAKALLRKAIELSQSVP 123 (629)
T ss_pred HHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHcccccH-HhhhhHHHHHHHHHHHHhcCCCchHHHHHHHHHHHhcCCc
Confidence 466666677665 45789999999999998764 442 2556788889999999988 8999999999999997662
Q ss_pred CcCHHHHHHHHHHHHHhhcHHHHHHH
Q 007571 461 NRHAKSLWRRAQAYDMLALAKESLLD 486 (598)
Q Consensus 461 ~~~~KAyyRRAqAy~~LGdy~EAl~d 486 (598)
.-+-|..+.+|+.+.--.+|..|++.
T Consensus 124 ~wsckllfQLaql~~idkD~~sA~el 149 (629)
T KOG2300|consen 124 YWSCKLLFQLAQLHIIDKDFPSALEL 149 (629)
T ss_pred hhhHHHHHHHHHHHhhhccchhHHHH
Confidence 22458889999999999999988765
No 372
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=40.46 E-value=96 Score=37.31 Aligned_cols=82 Identities=11% Similarity=-0.085 Sum_probs=52.7
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCcCHHHHH
Q 007571 389 LVVKLEGNSLFSAGNISGAASKYSEALALCPMRSKKERVVLYSNRAQCHLLMQQPLAAISDATRALCLHNPLNRHAKSLW 468 (598)
Q Consensus 389 ~~lKeeGN~lfk~GdY~eAIe~YskALel~P~~~~~~~a~ly~NRA~cylKLgdyeeAI~D~~kALeLdP~~~~~~KAyy 468 (598)
.-+-+.+..|...|+|+.|.+.|+++=. +..--..|-+.|+|..|.....+.. .|.. -...|.
T Consensus 766 ~yy~~iadhyan~~dfe~ae~lf~e~~~-------------~~dai~my~k~~kw~da~kla~e~~--~~e~--t~~~yi 828 (1636)
T KOG3616|consen 766 GYYGEIADHYANKGDFEIAEELFTEADL-------------FKDAIDMYGKAGKWEDAFKLAEECH--GPEA--TISLYI 828 (1636)
T ss_pred ccchHHHHHhccchhHHHHHHHHHhcch-------------hHHHHHHHhccccHHHHHHHHHHhc--Cchh--HHHHHH
Confidence 3344556667777888888888876532 1122345667788888877666653 2331 345677
Q ss_pred HHHHHHHHhhcHHHHHHHH
Q 007571 469 RRAQAYDMLALAKESLLDA 487 (598)
Q Consensus 469 RRAqAy~~LGdy~EAl~d~ 487 (598)
..|+-+...|+|.+|...|
T Consensus 829 akaedldehgkf~eaeqly 847 (1636)
T KOG3616|consen 829 AKAEDLDEHGKFAEAEQLY 847 (1636)
T ss_pred HhHHhHHhhcchhhhhhee
Confidence 7777788888888887655
No 373
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=40.42 E-value=67 Score=20.89 Aligned_cols=27 Identities=33% Similarity=0.448 Sum_probs=21.4
Q ss_pred CCHHHHHHHHHHHHHhCCCCchHHHHHHHHHH
Q 007571 402 GNISGAASKYSEALALCPMRSKKERVVLYSNR 433 (598)
Q Consensus 402 GdY~eAIe~YskALel~P~~~~~~~a~ly~NR 433 (598)
|+++.|-..|++++...|.. ..++...
T Consensus 1 ~~~~~~r~i~e~~l~~~~~~-----~~~W~~y 27 (33)
T smart00386 1 GDIERARKIYERALEKFPKS-----VELWLKY 27 (33)
T ss_pred CcHHHHHHHHHHHHHHCCCC-----hHHHHHH
Confidence 56788999999999999976 6666543
No 374
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=40.21 E-value=3.2e+02 Score=31.77 Aligned_cols=105 Identities=13% Similarity=-0.006 Sum_probs=71.5
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-------C--------------chHHHHHHHHHHHHHHHHcCChHHH
Q 007571 388 ALVVKLEGNSLFSAGNISGAASKYSEALALCPM-------R--------------SKKERVVLYSNRAQCHLLMQQPLAA 446 (598)
Q Consensus 388 A~~lKeeGN~lfk~GdY~eAIe~YskALel~P~-------~--------------~~~~~a~ly~NRA~cylKLgdyeeA 446 (598)
+..+.--|-.....+..+.|.+.+.++++.... . .......++...+.+.+-+++|..|
T Consensus 301 ~L~y~lS~l~~~~~~~~~ks~k~~~k~l~~i~~~~~~~~~~~~~sl~~~~~~~~~~~~l~~~~~~y~~~~~~~~~~~~~a 380 (608)
T PF10345_consen 301 ALVYFLSGLHNLYKGSMDKSEKFLEKALKQIEKLKIKSPSAPSESLSEASERIQWLRYLQCYLLFYQIWCNFIRGDWSKA 380 (608)
T ss_pred HHHHHHHHHHHhhccCchHHHHHHHHHHHHHHHhhccCCCCCCcCHHHHHHhHHHHHHHHHHHHHHHHHHHHHCcCHHHH
Confidence 333444455555666666666666666654211 0 0123566777788999999999999
Q ss_pred HHHHHHHHHhCC---C---CCcCHHHHHHHHHHHHHhhcHHHHHHHHHHHHH
Q 007571 447 ISDATRALCLHN---P---LNRHAKSLWRRAQAYDMLALAKESLLDAILFIN 492 (598)
Q Consensus 447 I~D~~kALeLdP---~---~~~~~KAyyRRAqAy~~LGdy~EAl~d~~kALe 492 (598)
....+.+..... . ....+..+|-.|..+...|+.+.|+..|.+..-
T Consensus 381 ~~~l~~~~~~~~~~~~~~~~~~~~~~~yL~gl~~q~~g~l~~A~~~y~~~~~ 432 (608)
T PF10345_consen 381 TQELEFMRQLCQRSPSKLYESLYPLLHYLLGLYYQSTGDLEAALYQYQKPRF 432 (608)
T ss_pred HHHHHHHHHHHhcCccchhhhhhHHHHHHHHHHHHHcCCHHHHHHHHhhhHH
Confidence 998887776532 1 111477899999999999999999999985553
No 375
>PF04212 MIT: MIT (microtubule interacting and transport) domain; InterPro: IPR007330 The MIT domain is found in vacuolar sorting proteins, spastin (probable ATPase involved in the assembly or function of nuclear protein complexes), and a sorting nexin, which may play a role in intracellular trafficking.; PDB: 2DL1_A 2JQK_A 1WR0_A 2CPT_A 2JQH_A 2V6Y_A 2JQ9_A 2K3W_A 1YXR_A 3EAB_E ....
Probab=39.66 E-value=1.1e+02 Score=24.79 Aligned_cols=31 Identities=23% Similarity=-0.008 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHhhcHHHHHHHHHHHHHHhcc
Q 007571 466 SLWRRAQAYDMLALAKESLLDAILFINECSQ 496 (598)
Q Consensus 466 AyyRRAqAy~~LGdy~EAl~d~~kALel~~k 496 (598)
.+..+|.-....|++++|+..|..+++.+..
T Consensus 7 ~~~~~Av~~D~~g~~~~A~~~Y~~ai~~l~~ 37 (69)
T PF04212_consen 7 ELIKKAVEADEAGNYEEALELYKEAIEYLMQ 37 (69)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Confidence 3445555666668888888888888777653
No 376
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=39.52 E-value=8.2e+02 Score=30.21 Aligned_cols=109 Identities=16% Similarity=-0.023 Sum_probs=83.4
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC----chHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC--
Q 007571 387 AALVVKLEGNSLFSAGNISGAASKYSEALALCPMR----SKKERVVLYSNRAQCHLLMQQPLAAISDATRALCLHNPL-- 460 (598)
Q Consensus 387 ~A~~lKeeGN~lfk~GdY~eAIe~YskALel~P~~----~~~~~a~ly~NRA~cylKLgdyeeAI~D~~kALeLdP~~-- 460 (598)
...-....+-....+.+|.+|-....++-...|.. .....+..-.-+|.+.+..+++++|+..++.|+..=|..
T Consensus 414 ~P~Lvll~aW~~~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~ 493 (894)
T COG2909 414 TPRLVLLQAWLLASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAY 493 (894)
T ss_pred CchHHHHHHHHHHHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccc
Confidence 33444556677788899999988888877765542 235567777888999999999999999999999877762
Q ss_pred CcCHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHhc
Q 007571 461 NRHAKSLWRRAQAYDMLALAKESLLDAILFINECS 495 (598)
Q Consensus 461 ~~~~KAyyRRAqAy~~LGdy~EAl~d~~kALel~~ 495 (598)
..-.-++...|.+..-.|++++|......+.+..-
T Consensus 494 ~~r~~~~sv~~~a~~~~G~~~~Al~~~~~a~~~a~ 528 (894)
T COG2909 494 RSRIVALSVLGEAAHIRGELTQALALMQQAEQMAR 528 (894)
T ss_pred hhhhhhhhhhhHHHHHhchHHHHHHHHHHHHHHHH
Confidence 11345666678899999999999988888877744
No 377
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=39.36 E-value=3.8e+02 Score=26.21 Aligned_cols=84 Identities=10% Similarity=-0.189 Sum_probs=58.9
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCcCHHHHHHH
Q 007571 391 VKLEGNSLFSAGNISGAASKYSEALALCPMRSKKERVVLYSNRAQCHLLMQQPLAAISDATRALCLHNPLNRHAKSLWRR 470 (598)
Q Consensus 391 lKeeGN~lfk~GdY~eAIe~YskALel~P~~~~~~~a~ly~NRA~cylKLgdyeeAI~D~~kALeLdP~~~~~~KAyyRR 470 (598)
+.+.-......++...+.......--+-|.. ..+-.--+..++..|+|.+|+..++...+-.+. .+-+---+
T Consensus 13 Li~~~~~aL~~~d~~D~e~lLdALrvLrP~~-----~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~~~---~p~~kAL~ 84 (153)
T TIGR02561 13 LIEVLMYALRSADPYDAQAMLDALRVLRPNL-----KELDMFDGWLLIARGNYDEAARILRELLSSAGA---PPYGKALL 84 (153)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHhCCCc-----cccchhHHHHHHHcCCHHHHHHHHHhhhccCCC---chHHHHHH
Confidence 3333333444777777777766655667887 666666778889999999999999998877666 44333335
Q ss_pred HHHHHHhhcHHH
Q 007571 471 AQAYDMLALAKE 482 (598)
Q Consensus 471 AqAy~~LGdy~E 482 (598)
+.|+..+|+.+-
T Consensus 85 A~CL~al~Dp~W 96 (153)
T TIGR02561 85 ALCLNAKGDAEW 96 (153)
T ss_pred HHHHHhcCChHH
Confidence 888999998654
No 378
>KOG0530 consensus Protein farnesyltransferase, alpha subunit/protein geranylgeranyltransferase type I, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=38.86 E-value=4.6e+02 Score=28.20 Aligned_cols=91 Identities=10% Similarity=0.063 Sum_probs=68.7
Q ss_pred HHHcCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHHHcC-ChHHHHHHHHHHHHhCCCCCcCHHHHHHHHHHHHH
Q 007571 398 LFSAGNISGAASKYSEALALCPMRSKKERVVLYSNRAQCHLLMQ-QPLAAISDATRALCLHNPLNRHAKSLWRRAQAYDM 476 (598)
Q Consensus 398 lfk~GdY~eAIe~YskALel~P~~~~~~~a~ly~NRA~cylKLg-dyeeAI~D~~kALeLdP~~~~~~KAyyRRAqAy~~ 476 (598)
+++..+-..|+..-..+|.++|.+ .+.+.-|=.|.-.++ +..+-+...+..++-+|. |...+..|-.+...
T Consensus 53 ~~~~E~S~RAl~LT~d~i~lNpAn-----YTVW~yRr~iL~~l~~dL~~El~~l~eI~e~npK---NYQvWHHRr~ive~ 124 (318)
T KOG0530|consen 53 IAKNEKSPRALQLTEDAIRLNPAN-----YTVWQYRRVILRHLMSDLNKELEYLDEIIEDNPK---NYQVWHHRRVIVEL 124 (318)
T ss_pred HhccccCHHHHHHHHHHHHhCccc-----chHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCcc---chhHHHHHHHHHHH
Confidence 345566678888888899999887 777777777766655 567777888888888888 88888888888888
Q ss_pred hhcHH-HHHHHHHHHHHHhcc
Q 007571 477 LALAK-ESLLDAILFINECSQ 496 (598)
Q Consensus 477 LGdy~-EAl~d~~kALel~~k 496 (598)
+|++. .-+...+.++....+
T Consensus 125 l~d~s~rELef~~~~l~~DaK 145 (318)
T KOG0530|consen 125 LGDPSFRELEFTKLMLDDDAK 145 (318)
T ss_pred hcCcccchHHHHHHHHhcccc
Confidence 88877 666666666664433
No 379
>PF10952 DUF2753: Protein of unknown function (DUF2753); InterPro: IPR020206 This entry represents a group of uncharacterised proteins.
Probab=38.33 E-value=1.4e+02 Score=28.40 Aligned_cols=97 Identities=19% Similarity=0.166 Sum_probs=65.8
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------ch----HHHHHHHHHHHHHHHHcCChHHHHHHHH----HHHH
Q 007571 390 VVKLEGNSLFSAGNISGAASKYSEALALCPMR------SK----KERVVLYSNRAQCHLLMQQPLAAISDAT----RALC 455 (598)
Q Consensus 390 ~lKeeGN~lfk~GdY~eAIe~YskALel~P~~------~~----~~~a~ly~NRA~cylKLgdyeeAI~D~~----kALe 455 (598)
++...|+..++.+++-.||-+|++|+.+..+- .. ...+...-|+|.-+..+|+.+-.+++.. +++.
T Consensus 3 ~htllAd~a~~~~~~l~si~hYQqAls~se~~~~~~~~el~dll~i~VisCHNLA~FWR~~gd~~yELkYLqlASE~Vlt 82 (140)
T PF10952_consen 3 KHTLLADQAFKEADPLRSILHYQQALSLSEEIDESNEIELEDLLTISVISCHNLADFWRSQGDSDYELKYLQLASEKVLT 82 (140)
T ss_pred hHHHHHHHHhhcccHHHHHHHHHHHHHHHHHhcccccccHHHHHHHHHHHHhhHHHHHHHcCChHHHHHHHHHHHHHHHH
Confidence 35567899999999999999999999864321 01 1235556789999999999998888764 5677
Q ss_pred hCCCC-CcCHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHhc
Q 007571 456 LHNPL-NRHAKSLWRRAQAYDMLALAKESLLDAILFINECS 495 (598)
Q Consensus 456 LdP~~-~~~~KAyyRRAqAy~~LGdy~EAl~d~~kALel~~ 495 (598)
+-|.- +..-.++ ...+|--..|+-+| ++..|
T Consensus 83 LiPQCp~~~C~af------i~sLGCCk~ALl~F---~KRHP 114 (140)
T PF10952_consen 83 LIPQCPNTECEAF------IDSLGCCKKALLDF---MKRHP 114 (140)
T ss_pred hccCCCCcchHHH------HHhhhccHHHHHHH---HHhCC
Confidence 87771 1122222 34567666776544 44444
No 380
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=38.17 E-value=59 Score=37.62 Aligned_cols=53 Identities=21% Similarity=0.010 Sum_probs=44.9
Q ss_pred CChHHHHHHHHHHHHhCCCCCcCHHHHHHHHHHHHHh---hcHHHHHHHHHHHHHHhcc
Q 007571 441 QQPLAAISDATRALCLHNPLNRHAKSLWRRAQAYDML---ALAKESLLDAILFINECSQ 496 (598)
Q Consensus 441 gdyeeAI~D~~kALeLdP~~~~~~KAyyRRAqAy~~L---Gdy~EAl~d~~kALel~~k 496 (598)
..+..||.+|.++++.-|. ....|-+||.+++.- |+.-.|+.|+..|+++.+.
T Consensus 388 ~~~~~~i~~~s~a~q~~~~---~~~~l~nraa~lmkRkW~~d~~~AlrDch~Alrln~s 443 (758)
T KOG1310|consen 388 SIVSGAISHYSRAIQYVPD---AIYLLENRAAALMKRKWRGDSYLALRDCHVALRLNPS 443 (758)
T ss_pred HHHHHHHHHHHHHhhhccc---hhHHHHhHHHHHHhhhccccHHHHHHhHHhhccCChH
Confidence 4578899999999999999 889999999999886 5667788888888887654
No 381
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=37.88 E-value=1.1e+02 Score=33.81 Aligned_cols=94 Identities=12% Similarity=-0.086 Sum_probs=70.0
Q ss_pred HHHcCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC-CCcCHHHHHHHHHHHHH
Q 007571 398 LFSAGNISGAASKYSEALALCPMRSKKERVVLYSNRAQCHLLMQQPLAAISDATRALCLHNP-LNRHAKSLWRRAQAYDM 476 (598)
Q Consensus 398 lfk~GdY~eAIe~YskALel~P~~~~~~~a~ly~NRA~cylKLgdyeeAI~D~~kALeLdP~-~~~~~KAyyRRAqAy~~ 476 (598)
+...|-|.+|.+.-.+|++++|.+ .-+.--.|.++...++++++.+...+--..-.. ..+...-|+.-|..|..
T Consensus 185 L~E~g~y~dAEk~A~ralqiN~~D-----~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE 259 (491)
T KOG2610|consen 185 LEECGIYDDAEKQADRALQINRFD-----CWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIE 259 (491)
T ss_pred HHHhccchhHHHHHHhhccCCCcc-----hHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhc
Confidence 456789999999999999999987 666666777777889999999876654322111 01134567888999999
Q ss_pred hhcHHHHHHHHHHHHHHhcc
Q 007571 477 LALAKESLLDAILFINECSQ 496 (598)
Q Consensus 477 LGdy~EAl~d~~kALel~~k 496 (598)
-+.|+.|+..|..-+-...+
T Consensus 260 ~aeye~aleIyD~ei~k~l~ 279 (491)
T KOG2610|consen 260 GAEYEKALEIYDREIWKRLE 279 (491)
T ss_pred ccchhHHHHHHHHHHHHHhh
Confidence 99999999999876644333
No 382
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=37.16 E-value=2.3e+02 Score=29.64 Aligned_cols=60 Identities=12% Similarity=-0.040 Sum_probs=50.3
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC
Q 007571 395 GNSLFSAGNISGAASKYSEALALCPMRSKKERVVLYSNRAQCHLLMQQPLAAISDATRALCLHNP 459 (598)
Q Consensus 395 GN~lfk~GdY~eAIe~YskALel~P~~~~~~~a~ly~NRA~cylKLgdyeeAI~D~~kALeLdP~ 459 (598)
..++.+.+...+||..-..-++-.|.+ ....--+=..+.-.|+|++|...++-+-+++|+
T Consensus 8 ~seLL~~~sL~dai~~a~~qVkakPtd-----a~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~ 67 (273)
T COG4455 8 ISELLDDNSLQDAIGLARDQVKAKPTD-----AGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQ 67 (273)
T ss_pred HHHHHHhccHHHHHHHHHHHHhcCCcc-----ccchhHHHHHHhhcchHHHHHHHHHHHhhcCcc
Confidence 345778889999999999999999997 444444556677889999999999999999998
No 383
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=36.98 E-value=4.4e+02 Score=32.65 Aligned_cols=109 Identities=14% Similarity=0.047 Sum_probs=68.3
Q ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---chHH--HHHHHHHHHHHHH----------HcC--ChHHH-
Q 007571 385 QAAALVVKLEGNSLFSAGNISGAASKYSEALALCPMR---SKKE--RVVLYSNRAQCHL----------LMQ--QPLAA- 446 (598)
Q Consensus 385 ~~~A~~lKeeGN~lfk~GdY~eAIe~YskALel~P~~---~~~~--~a~ly~NRA~cyl----------KLg--dyeeA- 446 (598)
.....+..++|-.+++.|+|.+|+++|..+|-..|-. .+++ .+.-+.-.+.-|+ +++ ..+.+
T Consensus 988 l~~l~~kl~~gy~ltt~gKf~eAie~Frsii~~i~l~vvd~~~e~aea~~li~i~~eYi~gL~~E~~Rr~l~~~~~~~~~ 1067 (1202)
T KOG0292|consen 988 LSQLNKKLQKGYKLTTEGKFGEAIEKFRSIIYSIPLLVVDSKEEEAEADELIKICREYIVGLSVELERRKLKKPNLEQQL 1067 (1202)
T ss_pred HHHHHHHHHHHHhhhccCcHHHHHHHHHHHHhheeEEEecchhhHHHHHHHHHHHHHHHhhheeeeeecccCCchHHHHH
Confidence 4456677789999999999999999999999876652 1111 1111222221121 122 23333
Q ss_pred -HHHHHHHHHhCCCCCcCHHHHHH-HHHHHHHhhcHHHHHHHHHHHHHHhcc
Q 007571 447 -ISDATRALCLHNPLNRHAKSLWR-RAQAYDMLALAKESLLDAILFINECSQ 496 (598)
Q Consensus 447 -I~D~~kALeLdP~~~~~~KAyyR-RAqAy~~LGdy~EAl~d~~kALel~~k 496 (598)
++.|=.-..|.|. |.-.-.| --.++.++++++.|-....+.+++.|.
T Consensus 1068 ElAaYFt~~~Lqp~---H~ilalrtA~n~ffK~kN~ktAs~fa~rLlel~~~ 1116 (1202)
T KOG0292|consen 1068 ELAAYFTHCKLQPM---HRILALRTAMNVFFKLKNLKTAAEFARRLLELAPS 1116 (1202)
T ss_pred HHHHHhhcCCCCcH---HHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhCCC
Confidence 2222223456776 5443334 445889999999999999999998775
No 384
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=36.74 E-value=2.1e+02 Score=29.20 Aligned_cols=31 Identities=13% Similarity=-0.095 Sum_probs=14.7
Q ss_pred CHHHHHHHHHHHHH----hhcHHHHHHHHHHHHHH
Q 007571 463 HAKSLWRRAQAYDM----LALAKESLLDAILFINE 493 (598)
Q Consensus 463 ~~KAyyRRAqAy~~----LGdy~EAl~d~~kALel 493 (598)
++.+.+.+|..|.. ..++.+|...|.++.+.
T Consensus 108 ~~~a~~~lg~~~~~G~gv~~d~~~A~~~~~~Aa~~ 142 (292)
T COG0790 108 LAEALFNLGLMYANGRGVPLDLVKALKYYEKAAKL 142 (292)
T ss_pred cHHHHHhHHHHHhcCCCcccCHHHHHHHHHHHHHc
Confidence 44455555544444 23445555555554444
No 385
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=36.71 E-value=9.1e+02 Score=29.87 Aligned_cols=91 Identities=14% Similarity=0.084 Sum_probs=71.4
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC---CcCHH
Q 007571 389 LVVKLEGNSLFSAGNISGAASKYSEALALCPMRSKKERVVLYSNRAQCHLLMQQPLAAISDATRALCLHNPL---NRHAK 465 (598)
Q Consensus 389 ~~lKeeGN~lfk~GdY~eAIe~YskALel~P~~~~~~~a~ly~NRA~cylKLgdyeeAI~D~~kALeLdP~~---~~~~K 465 (598)
..---+|.....+|+++.|+..-..++...|....-.+..++++.+.++.-.|++++|......+.++.-.- ....-
T Consensus 459 e~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~~~a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~ 538 (894)
T COG2909 459 EFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVALSVLGEAAHIRGELTQALALMQQAEQMARQHDVYHLALW 538 (894)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhhhhhhHHHHHhchHHHHHHHHHHHHHHHHHcccHHHHHH
Confidence 333335666778999999999999999999987666779999999999999999999999988888773220 11234
Q ss_pred HHHHHHHHHHHhhc
Q 007571 466 SLWRRAQAYDMLAL 479 (598)
Q Consensus 466 AyyRRAqAy~~LGd 479 (598)
+.+.++.++...|+
T Consensus 539 ~~~~~s~il~~qGq 552 (894)
T COG2909 539 SLLQQSEILEAQGQ 552 (894)
T ss_pred HHHHHHHHHHHhhH
Confidence 56667888888883
No 386
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=36.34 E-value=62 Score=32.84 Aligned_cols=50 Identities=10% Similarity=0.004 Sum_probs=41.5
Q ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHHHcCChHHHH
Q 007571 397 SLFSAGNISGAASKYSEALALCPMRSKKERVVLYSNRAQCHLLMQQPLAAI 447 (598)
Q Consensus 397 ~lfk~GdY~eAIe~YskALel~P~~~~~~~a~ly~NRA~cylKLgdyeeAI 447 (598)
.+|-+.+-.+|+..|.++|++.+.. ....+.++.-+|..|.++++++.|-
T Consensus 149 tyY~krD~~Kt~~ll~~~L~l~~~~-~~~n~eil~sLas~~~~~~~~e~AY 198 (203)
T PF11207_consen 149 TYYTKRDPEKTIQLLLRALELSNPD-DNFNPEILKSLASIYQKLKNYEQAY 198 (203)
T ss_pred HHHHccCHHHHHHHHHHHHHhcCCC-CCCCHHHHHHHHHHHHHhcchhhhh
Confidence 3566889999999999999997553 2344888889999999999999874
No 387
>PRK10902 FKBP-type peptidyl-prolyl cis-trans isomerase; Provisional
Probab=35.80 E-value=2.9 Score=43.90 Aligned_cols=43 Identities=21% Similarity=0.127 Sum_probs=38.7
Q ss_pred cccCCccceehhhccccccccCCCC-CCCCccHHHHHHHHHHHh
Q 007571 325 GDHKKLGDSIVNVLQDCIQLQGTVR-SSPSNRSKEQIEELLNSR 367 (598)
Q Consensus 325 g~~~k~GE~~~~~L~pdy~~g~~g~-~ip~~~tl~~~~ELl~~k 367 (598)
-..|++|++..+.+.|+++||..|. .+|++.++.|.++++++.
T Consensus 206 L~~Mk~Gek~~l~IP~~laYG~~g~~gIppns~LvfeVeLl~V~ 249 (269)
T PRK10902 206 LKNIKKGGKIKLVIPPELAYGKAGVPGIPANSTLVFDVELLDVK 249 (269)
T ss_pred HhcCCCCcEEEEEECchhhCCCCCCCCCCCCCcEEEEEEEEEec
Confidence 3579999999999999999999887 799999999999998875
No 388
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=35.74 E-value=2.1e+02 Score=34.71 Aligned_cols=97 Identities=16% Similarity=0.043 Sum_probs=52.0
Q ss_pred HHHHHHHHcCCHHHHHHHHH------HHHHhCCCCchHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHhC------CCC
Q 007571 393 LEGNSLFSAGNISGAASKYS------EALALCPMRSKKERVVLYSNRAQCHLLMQQPLAAISDATRALCLH------NPL 460 (598)
Q Consensus 393 eeGN~lfk~GdY~eAIe~Ys------kALel~P~~~~~~~a~ly~NRA~cylKLgdyeeAI~D~~kALeLd------P~~ 460 (598)
..|..+-|-.+|++|+++|. +||++..--.+...+.+--..+.-+...|+++.|+.++-.|-.+- -..
T Consensus 666 kagdlfeki~d~dkale~fkkgdaf~kaielarfafp~evv~lee~wg~hl~~~~q~daainhfiea~~~~kaieaai~a 745 (1636)
T KOG3616|consen 666 KAGDLFEKIHDFDKALECFKKGDAFGKAIELARFAFPEEVVKLEEAWGDHLEQIGQLDAAINHFIEANCLIKAIEAAIGA 745 (1636)
T ss_pred hhhhHHHHhhCHHHHHHHHHcccHHHHHHHHHHhhCcHHHhhHHHHHhHHHHHHHhHHHHHHHHHHhhhHHHHHHHHhhh
Confidence 34445556678888888865 466654322233344455555666666777777776554332110 000
Q ss_pred CcCH---------------HHHH-HHHHHHHHhhcHHHHHHHHHH
Q 007571 461 NRHA---------------KSLW-RRAQAYDMLALAKESLLDAIL 489 (598)
Q Consensus 461 ~~~~---------------KAyy-RRAqAy~~LGdy~EAl~d~~k 489 (598)
..+. ..|| ..|+-|..+|+|+-|.+.|.+
T Consensus 746 kew~kai~ildniqdqk~~s~yy~~iadhyan~~dfe~ae~lf~e 790 (1636)
T KOG3616|consen 746 KEWKKAISILDNIQDQKTASGYYGEIADHYANKGDFEIAEELFTE 790 (1636)
T ss_pred hhhhhhHhHHHHhhhhccccccchHHHHHhccchhHHHHHHHHHh
Confidence 0011 2233 346667777888877766654
No 389
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=35.64 E-value=3e+02 Score=29.94 Aligned_cols=108 Identities=11% Similarity=0.023 Sum_probs=63.2
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---chHHHHHHHHHHHHHHHHcCChH----------HHHHHHHHH-----
Q 007571 392 KLEGNSLFSAGNISGAASKYSEALALCPMR---SKKERVVLYSNRAQCHLLMQQPL----------AAISDATRA----- 453 (598)
Q Consensus 392 KeeGN~lfk~GdY~eAIe~YskALel~P~~---~~~~~a~ly~NRA~cylKLgdye----------eAI~D~~kA----- 453 (598)
.+.+|.+.+.++|++||..|.+.+...-.. ...+.-....|++..|...|++. ++..+++++
T Consensus 7 le~a~~~v~~~~~~~ai~~yk~iL~kg~s~dek~~nEqE~tvlel~~lyv~~g~~~~l~~~i~~sre~m~~ftk~k~~Ki 86 (421)
T COG5159 7 LELANNAVKSNDIEKAIGEYKRILGKGVSKDEKTLNEQEATVLELFKLYVSKGDYCSLGDTITSSREAMEDFTKPKITKI 86 (421)
T ss_pred HHHHHHhhhhhhHHHHHHHHHHHhcCCCChhhhhhhHHHHHHHHHHHHHHhcCCcchHHHHHHhhHHHHHHhcchhHHHH
Confidence 456777888888888888888887652111 11233455667777777777653 222222221
Q ss_pred ----HHhCCCC--Cc----------------CHHHH------HHHHHHHHHhhcHHHHHHHHHHHHHHhccCCC
Q 007571 454 ----LCLHNPL--NR----------------HAKSL------WRRAQAYDMLALAKESLLDAILFINECSQSND 499 (598)
Q Consensus 454 ----LeLdP~~--~~----------------~~KAy------yRRAqAy~~LGdy~EAl~d~~kALel~~k~~d 499 (598)
++.-|.. ++ .-+.+ ..+..+++..|.|.+|+......+.-+.+-.|
T Consensus 87 irtLiekf~~~~dsl~dqi~v~~~~iewA~rEkr~fLr~~Le~Kli~l~y~~~~YsdalalIn~ll~ElKk~DD 160 (421)
T COG5159 87 IRTLIEKFPYSSDSLEDQIKVLTALIEWADREKRKFLRLELECKLIYLLYKTGKYSDALALINPLLHELKKYDD 160 (421)
T ss_pred HHHHHHhcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhhcC
Confidence 1111110 00 11122 23567899999999999998888776655433
No 390
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=35.08 E-value=2.4e+02 Score=33.59 Aligned_cols=95 Identities=14% Similarity=-0.055 Sum_probs=71.8
Q ss_pred HHcCCHHHHHHHHHHHHHh-CCCCchHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC-CcCHHHHHHHHHHHHH
Q 007571 399 FSAGNISGAASKYSEALAL-CPMRSKKERVVLYSNRAQCHLLMQQPLAAISDATRALCLHNPL-NRHAKSLWRRAQAYDM 476 (598)
Q Consensus 399 fk~GdY~eAIe~YskALel-~P~~~~~~~a~ly~NRA~cylKLgdyeeAI~D~~kALeLdP~~-~~~~KAyyRRAqAy~~ 476 (598)
+..|++.+-+.-|++|+.. +|.....-...++.-.|..|-..|+.+.|...+++|+..+-.. +--...|..-|..-+.
T Consensus 358 l~e~~~~~~i~tyteAv~~vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~~V~y~~v~dLa~vw~~waemElr 437 (835)
T KOG2047|consen 358 LYEGNAAEQINTYTEAVKTVDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEKATKVPYKTVEDLAEVWCAWAEMELR 437 (835)
T ss_pred hhcCChHHHHHHHHHHHHccCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHh
Confidence 3578899999999999975 5654334457899999999999999999999999999886551 0013455666666666
Q ss_pred hhcHHHHHHHHHHHHHH
Q 007571 477 LALAKESLLDAILFINE 493 (598)
Q Consensus 477 LGdy~EAl~d~~kALel 493 (598)
-.+++.|+...+.|.-.
T Consensus 438 h~~~~~Al~lm~~A~~v 454 (835)
T KOG2047|consen 438 HENFEAALKLMRRATHV 454 (835)
T ss_pred hhhHHHHHHHHHhhhcC
Confidence 67788888877777654
No 391
>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [].; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.
Probab=34.78 E-value=1.1e+02 Score=22.32 Aligned_cols=27 Identities=15% Similarity=-0.197 Sum_probs=13.9
Q ss_pred HHHHHHHcCChHHHHHH--HHHHHHhCCC
Q 007571 433 RAQCHLLMQQPLAAISD--ATRALCLHNP 459 (598)
Q Consensus 433 RA~cylKLgdyeeAI~D--~~kALeLdP~ 459 (598)
.|..+...|+|++|+.. +.-+..++|.
T Consensus 7 ~a~~~y~~~ky~~A~~~~~y~~l~~ld~~ 35 (36)
T PF07720_consen 7 LAYNFYQKGKYDEAIHFFQYAFLCALDKY 35 (36)
T ss_dssp HHHHHHHTT-HHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHhccc
Confidence 45555556666666665 3355555443
No 392
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=34.71 E-value=1.2e+02 Score=34.83 Aligned_cols=63 Identities=16% Similarity=0.115 Sum_probs=51.7
Q ss_pred cCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHHHcCC-hHHHHHHHHHHHHhCCCCCcCHH---HHHHHH
Q 007571 401 AGNISGAASKYSEALALCPMRSKKERVVLYSNRAQCHLLMQQ-PLAAISDATRALCLHNPLNRHAK---SLWRRA 471 (598)
Q Consensus 401 ~GdY~eAIe~YskALel~P~~~~~~~a~ly~NRA~cylKLgd-yeeAI~D~~kALeLdP~~~~~~K---AyyRRA 471 (598)
.+.|.+--..|.+++...|++ +.+|.--|.-.+..+. .+.|...+.++|+.+|+ +++ .|||.-
T Consensus 118 ~~~~~~v~ki~~~~l~~Hp~~-----~dLWI~aA~wefe~n~ni~saRalflrgLR~npd---sp~Lw~eyfrmE 184 (568)
T KOG2396|consen 118 KKTYGEVKKIFAAMLAKHPNN-----PDLWIYAAKWEFEINLNIESARALFLRGLRFNPD---SPKLWKEYFRME 184 (568)
T ss_pred hcchhHHHHHHHHHHHhCCCC-----chhHHhhhhhHHhhccchHHHHHHHHHHhhcCCC---ChHHHHHHHHHH
Confidence 344888889999999999999 9999977777777765 89999999999999999 665 445443
No 393
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=34.70 E-value=1.9e+02 Score=32.13 Aligned_cols=88 Identities=10% Similarity=-0.036 Sum_probs=55.8
Q ss_pred CHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHHHcCChHHHHHHHHHHH-HhC--------CCCCcCHHHHHHHHHH
Q 007571 403 NISGAASKYSEALALCPMRSKKERVVLYSNRAQCHLLMQQPLAAISDATRAL-CLH--------NPLNRHAKSLWRRAQA 473 (598)
Q Consensus 403 dY~eAIe~YskALel~P~~~~~~~a~ly~NRA~cylKLgdyeeAI~D~~kAL-eLd--------P~~~~~~KAyyRRAqA 473 (598)
..++||..|.+|.+..|+. -.-.|.|.++...|.-.+......+.. .++ -....+.-.+--++.+
T Consensus 241 ~ldkAi~~Y~kgFe~~~~~------Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg~~~~~~dYWd~ATl~Ea 314 (374)
T PF13281_consen 241 SLDKAIEWYRKGFEIEPDY------YSGINAATLLMLAGHDFETSEELRKIGVKLSSLLGRKGSLEKMQDYWDVATLLEA 314 (374)
T ss_pred HHHHHHHHHHHHHcCCccc------cchHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHH
Confidence 3799999999999999874 334567776666665333322222221 111 1100023334445678
Q ss_pred HHHhhcHHHHHHHHHHHHHHhcc
Q 007571 474 YDMLALAKESLLDAILFINECSQ 496 (598)
Q Consensus 474 y~~LGdy~EAl~d~~kALel~~k 496 (598)
....|+++.|...++++++..+.
T Consensus 315 ~vL~~d~~ka~~a~e~~~~l~~~ 337 (374)
T PF13281_consen 315 SVLAGDYEKAIQAAEKAFKLKPP 337 (374)
T ss_pred HHHcCCHHHHHHHHHHHhhcCCc
Confidence 88899999999999999988543
No 394
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=34.47 E-value=1.2e+02 Score=29.36 Aligned_cols=49 Identities=20% Similarity=-0.046 Sum_probs=38.2
Q ss_pred HHHHHHHHHHHHhCCCCCcCHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHhcc
Q 007571 444 LAAISDATRALCLHNPLNRHAKSLWRRAQAYDMLALAKESLLDAILFINECSQ 496 (598)
Q Consensus 444 eeAI~D~~kALeLdP~~~~~~KAyyRRAqAy~~LGdy~EAl~d~~kALel~~k 496 (598)
...++...+.+...|+ +..|.+.+.++..+|+.++|.....++....|.
T Consensus 128 ~~~~~~a~~~l~~~P~----~~~~~~~a~~l~~~G~~~eA~~~~~~~~~lyP~ 176 (193)
T PF11846_consen 128 EAYIEWAERLLRRRPD----PNVYQRYALALALLGDPEEARQWLARARRLYPA 176 (193)
T ss_pred HHHHHHHHHHHHhCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCc
Confidence 4445566677777775 677888899999999999998888888888873
No 395
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=34.11 E-value=1.2e+02 Score=32.89 Aligned_cols=59 Identities=17% Similarity=0.135 Sum_probs=47.7
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 007571 390 VVKLEGNSLFSAGNISGAASKYSEALALCPMRSKKERVVLYSNRAQCHLLMQQPLAAISDATRA 453 (598)
Q Consensus 390 ~lKeeGN~lfk~GdY~eAIe~YskALel~P~~~~~~~a~ly~NRA~cylKLgdyeeAI~D~~kA 453 (598)
-+...+..+...|.|.+|++.-++++.++|-+ ...+--+-+.+..+|+--.|++.|++-
T Consensus 281 llgkva~~yle~g~~neAi~l~qr~ltldpL~-----e~~nk~lm~~la~~gD~is~~khyery 339 (361)
T COG3947 281 LLGKVARAYLEAGKPNEAIQLHQRALTLDPLS-----EQDNKGLMASLATLGDEISAIKHYERY 339 (361)
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHhhcChhh-----hHHHHHHHHHHHHhccchhhhhHHHHH
Confidence 34455667789999999999999999999987 566666777888999988888877653
No 396
>KOG4563 consensus Cell cycle-regulated histone H1-binding protein [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=32.69 E-value=1.1e+02 Score=33.92 Aligned_cols=36 Identities=19% Similarity=0.175 Sum_probs=32.1
Q ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 007571 385 QAAALVVKLEGNSLFSAGNISGAASKYSEALALCPM 420 (598)
Q Consensus 385 ~~~A~~lKeeGN~lfk~GdY~eAIe~YskALel~P~ 420 (598)
.+.+..+...|+..+..++|..|...|+.|..+...
T Consensus 38 ~~~~e~lv~~G~~~~~~~d~~~Avda~s~A~~l~~e 73 (400)
T KOG4563|consen 38 EKTLEELVQAGRRALCNNDIDKAVDALSEATELSDE 73 (400)
T ss_pred HHHHHHHHHhhhHHHhcccHHHHHHHHHHHHHHHHH
Confidence 456888999999999999999999999999988654
No 397
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=32.56 E-value=7.9e+02 Score=27.94 Aligned_cols=93 Identities=17% Similarity=-0.025 Sum_probs=70.1
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHH--HHHHcCChHHHHHHHHHHHHhCCCCCcCHHHHH
Q 007571 391 VKLEGNSLFSAGNISGAASKYSEALALCPMRSKKERVVLYSNRAQ--CHLLMQQPLAAISDATRALCLHNPLNRHAKSLW 468 (598)
Q Consensus 391 lKeeGN~lfk~GdY~eAIe~YskALel~P~~~~~~~a~ly~NRA~--cylKLgdyeeAI~D~~kALeLdP~~~~~~KAyy 468 (598)
..-++....-.|+|+.|-+.|+-.+. +|. ..++--|+. --..+|.++.|+.+..+|-..-|. -+-+..
T Consensus 123 hlLeAQaal~eG~~~~Ar~kfeAMl~-dPE------tRllGLRgLyleAqr~GareaAr~yAe~Aa~~Ap~---l~WA~~ 192 (531)
T COG3898 123 HLLEAQAALLEGDYEDARKKFEAMLD-DPE------TRLLGLRGLYLEAQRLGAREAARHYAERAAEKAPQ---LPWAAR 192 (531)
T ss_pred HHHHHHHHHhcCchHHHHHHHHHHhc-ChH------HHHHhHHHHHHHHHhcccHHHHHHHHHHHHhhccC---CchHHH
Confidence 34455666778999999999987664 565 233333433 334789999999999999999999 777766
Q ss_pred HHHHHHHHhhcHHHHHHHHHHHHHH
Q 007571 469 RRAQAYDMLALAKESLLDAILFINE 493 (598)
Q Consensus 469 RRAqAy~~LGdy~EAl~d~~kALel 493 (598)
-.-.....-|+++.|++..+.....
T Consensus 193 AtLe~r~~~gdWd~AlkLvd~~~~~ 217 (531)
T COG3898 193 ATLEARCAAGDWDGALKLVDAQRAA 217 (531)
T ss_pred HHHHHHHhcCChHHHHHHHHHHHHH
Confidence 6667888899999998877665544
No 398
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=31.98 E-value=1.1e+02 Score=33.00 Aligned_cols=51 Identities=10% Similarity=-0.124 Sum_probs=45.3
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHhCCCCCcCHHHHHHHHHHHHHhhcHHHHHHH
Q 007571 433 RAQCHLLMQQPLAAISDATRALCLHNPLNRHAKSLWRRAQAYDMLALAKESLLD 486 (598)
Q Consensus 433 RA~cylKLgdyeeAI~D~~kALeLdP~~~~~~KAyyRRAqAy~~LGdy~EAl~d 486 (598)
-+.-.+..+++.+|...+..++..+|. +..+..-++.+|...|+++.|...
T Consensus 140 ~~~~~~~~e~~~~a~~~~~~al~~~~~---~~~~~~~la~~~l~~g~~e~A~~i 190 (304)
T COG3118 140 EAKELIEAEDFGEAAPLLKQALQAAPE---NSEAKLLLAECLLAAGDVEAAQAI 190 (304)
T ss_pred HhhhhhhccchhhHHHHHHHHHHhCcc---cchHHHHHHHHHHHcCChHHHHHH
Confidence 455667789999999999999999999 999999999999999999988543
No 399
>COG4941 Predicted RNA polymerase sigma factor containing a TPR repeat domain [Transcription]
Probab=30.93 E-value=2.9e+02 Score=30.57 Aligned_cols=91 Identities=16% Similarity=0.068 Sum_probs=67.7
Q ss_pred HHcCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCcCHHHHHHHHHHHHHhh
Q 007571 399 FSAGNISGAASKYSEALALCPMRSKKERVVLYSNRAQCHLLMQQPLAAISDATRALCLHNPLNRHAKSLWRRAQAYDMLA 478 (598)
Q Consensus 399 fk~GdY~eAIe~YskALel~P~~~~~~~a~ly~NRA~cylKLgdyeeAI~D~~kALeLdP~~~~~~KAyyRRAqAy~~LG 478 (598)
-..-+|..-...|.-.....|+ +..-.|||.+.-+..-...++...+.... +|.-+-+.-.+--||-.+..+|
T Consensus 307 aedtDW~~I~aLYdaL~~~apS------PvV~LNRAVAla~~~Gp~agLa~ve~L~~-~~~L~gy~~~h~~RadlL~rLg 379 (415)
T COG4941 307 AEDTDWPAIDALYDALEQAAPS------PVVTLNRAVALAMREGPAAGLAMVEALLA-RPRLDGYHLYHAARADLLARLG 379 (415)
T ss_pred cCCCChHHHHHHHHHHHHhCCC------CeEeehHHHHHHHhhhHHhHHHHHHHhhc-ccccccccccHHHHHHHHHHhC
Confidence 3445666667777777777777 47788999999888888888877655443 3321114445566899999999
Q ss_pred cHHHHHHHHHHHHHHhcc
Q 007571 479 LAKESLLDAILFINECSQ 496 (598)
Q Consensus 479 dy~EAl~d~~kALel~~k 496 (598)
+..+|...|.+++.+..+
T Consensus 380 r~~eAr~aydrAi~La~~ 397 (415)
T COG4941 380 RVEEARAAYDRAIALARN 397 (415)
T ss_pred ChHHHHHHHHHHHHhcCC
Confidence 999999999999999765
No 400
>PRK13184 pknD serine/threonine-protein kinase; Reviewed
Probab=29.94 E-value=4.2e+02 Score=32.94 Aligned_cols=102 Identities=13% Similarity=0.049 Sum_probs=71.2
Q ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCcC
Q 007571 384 KQAAALVVKLEGNSLFSAGNISGAASKYSEALALCPMRSKKERVVLYSNRAQCHLLMQQPLAAISDATRALCLHNPLNRH 463 (598)
Q Consensus 384 ~~~~A~~lKeeGN~lfk~GdY~eAIe~YskALel~P~~~~~~~a~ly~NRA~cylKLgdyeeAI~D~~kALeLdP~~~~~ 463 (598)
.....-.+.++++..-....|.+|+..|++.-. .|.- +.=|.-.|.+|..+++|++-++.+.-|++.-|+ +
T Consensus 515 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~ 585 (932)
T PRK13184 515 QFRLGITLLEKASEQGDPRDFTQALSEFSYLHG-GVGA-----PLEYLGKALVYQRLGEYNEEIKSLLLALKRYSQ---H 585 (932)
T ss_pred HHHhhHHHHHHHHhcCChHHHHHHHHHHHHhcC-CCCC-----chHHHhHHHHHHHhhhHHHHHHHHHHHHHhcCC---C
Confidence 344445555555555444678889888887654 3333 566889999999999999999999999999998 6
Q ss_pred HH-------HHHHHHHHHHHhhcHHHHHHHHHHHHHHhcc
Q 007571 464 AK-------SLWRRAQAYDMLALAKESLLDAILFINECSQ 496 (598)
Q Consensus 464 ~K-------AyyRRAqAy~~LGdy~EAl~d~~kALel~~k 496 (598)
+. ..||+=.+.+. +-..|+....-++...|+
T Consensus 586 ~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~ 623 (932)
T PRK13184 586 PEISRLRDHLVYRLHESLYK--HRREALVFMLLALWIAPE 623 (932)
T ss_pred CccHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHhCcc
Confidence 54 34444444333 334566666777788776
No 401
>KOG0529 consensus Protein geranylgeranyltransferase type II, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=29.91 E-value=5.9e+02 Score=28.70 Aligned_cols=83 Identities=16% Similarity=0.034 Sum_probs=59.4
Q ss_pred CHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHHHcC--ChHHHHHHHHHHHHhCCCCCcCHHHHH-HHHHHHHHhhc
Q 007571 403 NISGAASKYSEALALCPMRSKKERVVLYSNRAQCHLLMQ--QPLAAISDATRALCLHNPLNRHAKSLW-RRAQAYDMLAL 479 (598)
Q Consensus 403 dY~eAIe~YskALel~P~~~~~~~a~ly~NRA~cylKLg--dyeeAI~D~~kALeLdP~~~~~~KAyy-RRAqAy~~LGd 479 (598)
-.++-+..-..+|+.+|.. ..+|.-|.-+..+.. +|..=++.|.++|+.||. |..++- ||=.+-.....
T Consensus 90 ~ld~eL~~~~~~L~~npks-----Y~aW~hR~w~L~~~p~~~~~~EL~lcek~L~~D~R---Nfh~W~YRRfV~~~~~~~ 161 (421)
T KOG0529|consen 90 LLDEELKYVESALKVNPKS-----YGAWHHRKWVLQKNPHSDWNTELQLCEKALKQDPR---NFHAWHYRRFVVEQAERS 161 (421)
T ss_pred hhHHHHHHHHHHHHhCchh-----HHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCcc---cccchHHHHHHHHHHhcc
Confidence 4566677788899999998 999999999999877 478899999999999998 555543 33333222222
Q ss_pred ---HHHHHHHHHHHHHH
Q 007571 480 ---AKESLLDAILFINE 493 (598)
Q Consensus 480 ---y~EAl~d~~kALel 493 (598)
..+-+....++|.-
T Consensus 162 ~~~~~~El~ftt~~I~~ 178 (421)
T KOG0529|consen 162 RNLEKEELEFTTKLIND 178 (421)
T ss_pred cccchhHHHHHHHHHhc
Confidence 44555555555544
No 402
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=29.48 E-value=1.2e+02 Score=32.60 Aligned_cols=55 Identities=18% Similarity=0.058 Sum_probs=39.1
Q ss_pred HcCChHHHHHHHHHHHHhCCCC-CcCHHHHHHHHHHHHHhhcHHHHHHHHHHHHHH
Q 007571 439 LMQQPLAAISDATRALCLHNPL-NRHAKSLWRRAQAYDMLALAKESLLDAILFINE 493 (598)
Q Consensus 439 KLgdyeeAI~D~~kALeLdP~~-~~~~KAyyRRAqAy~~LGdy~EAl~d~~kALel 493 (598)
+-.++++|++.+.+++++.|.. .--.||+-..-++++.+++|++-+..|.+.+..
T Consensus 39 ~e~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTY 94 (440)
T KOG1464|consen 39 KEDEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTY 94 (440)
T ss_pred cccCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHH
Confidence 3457788888888888887762 113477777778888888888877777776654
No 403
>KOG0529 consensus Protein geranylgeranyltransferase type II, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=29.39 E-value=8.5e+02 Score=27.54 Aligned_cols=92 Identities=11% Similarity=-0.074 Sum_probs=67.6
Q ss_pred HHHcCCH-HHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHH------------HHcCChHHHHHHHHHHHHhCCCCCcCH
Q 007571 398 LFSAGNI-SGAASKYSEALALCPMRSKKERVVLYSNRAQCH------------LLMQQPLAAISDATRALCLHNPLNRHA 464 (598)
Q Consensus 398 lfk~GdY-~eAIe~YskALel~P~~~~~~~a~ly~NRA~cy------------lKLgdyeeAI~D~~kALeLdP~~~~~~ 464 (598)
.-+.|.| .++++.=++.+..+|.. ..+|+-|=.++ .+..-+++-+.....+|+.+|+ ..
T Consensus 38 ~r~~~~yd~e~l~lt~~ll~~npe~-----~t~wN~Rr~~~~~r~~~~~~~~~ek~~~ld~eL~~~~~~L~~npk---sY 109 (421)
T KOG0529|consen 38 KREAKEYDEEHLELTSELLEKNPEF-----YTVWNYRRLIIEERLTRAQLEPLEKQALLDEELKYVESALKVNPK---SY 109 (421)
T ss_pred HHhccccchHHHHHHHHHHhhCchh-----hhhhhhHHHHHHHhhhhhcCCHHHHHHhhHHHHHHHHHHHHhCch---hH
Confidence 3455666 56778888888888886 44444444333 3344567777888899999999 99
Q ss_pred HHHHHHHHHHHHhhc--HHHHHHHHHHHHHHhccC
Q 007571 465 KSLWRRAQAYDMLAL--AKESLLDAILFINECSQS 497 (598)
Q Consensus 465 KAyyRRAqAy~~LGd--y~EAl~d~~kALel~~k~ 497 (598)
-+++.|..++...+. +..-++.+.++++..+++
T Consensus 110 ~aW~hR~w~L~~~p~~~~~~EL~lcek~L~~D~RN 144 (421)
T KOG0529|consen 110 GAWHHRKWVLQKNPHSDWNTELQLCEKALKQDPRN 144 (421)
T ss_pred HHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCccc
Confidence 999999999998875 577778888888876653
No 404
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=29.02 E-value=7.9e+02 Score=26.84 Aligned_cols=106 Identities=16% Similarity=-0.109 Sum_probs=71.4
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CchHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC--CcC
Q 007571 387 AALVVKLEGNSLFSAGNISGAASKYSEALALCPM-RSKKERVVLYSNRAQCHLLMQQPLAAISDATRALCLHNPL--NRH 463 (598)
Q Consensus 387 ~A~~lKeeGN~lfk~GdY~eAIe~YskALel~P~-~~~~~~a~ly~NRA~cylKLgdyeeAI~D~~kALeLdP~~--~~~ 463 (598)
--..+......+-++|-|.-|++.-.-.+.++|. ++ ..+..-.=..-++-++|+--+..++......... ..-
T Consensus 102 fflal~r~i~~L~~RG~~rTAlE~~KlLlsLdp~~DP----~g~ll~ID~~ALrs~~y~~Li~~~~~~~~~~~~~~~~~l 177 (360)
T PF04910_consen 102 FFLALFRYIQSLGRRGCWRTALEWCKLLLSLDPDEDP----LGVLLFIDYYALRSRQYQWLIDFSESPLAKCYRNWLSLL 177 (360)
T ss_pred HHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCc----chhHHHHHHHHHhcCCHHHHHHHHHhHhhhhhhhhhhhC
Confidence 3444555566678999999999999999999998 31 1222223334456677777777776654421110 001
Q ss_pred HHHHHHHHHHHHHhhcH---------------HHHHHHHHHHHHHhcc
Q 007571 464 AKSLWRRAQAYDMLALA---------------KESLLDAILFINECSQ 496 (598)
Q Consensus 464 ~KAyyRRAqAy~~LGdy---------------~EAl~d~~kALel~~k 496 (598)
+.--|-.|.|+..+++- +.|...+.+|+...|.
T Consensus 178 Pn~a~S~aLA~~~l~~~~~~~~~~~~~~~~~~~~A~~~L~~Ai~~fP~ 225 (360)
T PF04910_consen 178 PNFAFSIALAYFRLEKEESSQSSAQSGRSENSESADEALQKAILRFPW 225 (360)
T ss_pred ccHHHHHHHHHHHhcCccccccccccccccchhHHHHHHHHHHHHhHH
Confidence 23567889999999998 8999999999988764
No 405
>cd02678 MIT_VPS4 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in intracellular protein transport proteins of the AAA-ATPase family. The molecular function of the MIT domain is unclear.
Probab=28.91 E-value=2.5e+02 Score=23.41 Aligned_cols=30 Identities=17% Similarity=-0.035 Sum_probs=20.4
Q ss_pred HHHHHHHHHHhhcHHHHHHHHHHHHHHhcc
Q 007571 467 LWRRAQAYDMLALAKESLLDAILFINECSQ 496 (598)
Q Consensus 467 yyRRAqAy~~LGdy~EAl~d~~kALel~~k 496 (598)
+...|.-....|+|++|+..|..+++.+..
T Consensus 9 l~~~Av~~D~~g~y~eA~~~Y~~aie~l~~ 38 (75)
T cd02678 9 LVKKAIEEDNAGNYEEALRLYQHALEYFMH 38 (75)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 344455555568888888888888777653
No 406
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=28.56 E-value=5.7e+02 Score=25.07 Aligned_cols=69 Identities=10% Similarity=-0.159 Sum_probs=59.4
Q ss_pred HHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCcCHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHhc
Q 007571 424 KERVVLYSNRAQCHLLMQQPLAAISDATRALCLHNPLNRHAKSLWRRAQAYDMLALAKESLLDAILFINECS 495 (598)
Q Consensus 424 ~~~a~ly~NRA~cylKLgdyeeAI~D~~kALeLdP~~~~~~KAyyRRAqAy~~LGdy~EAl~d~~kALel~~ 495 (598)
......+.....+-++.++.+++.......--+.|. ++..-.--|..+...|++.+|+..|+...+..+
T Consensus 7 ~~iv~gLie~~~~al~~~~~~D~e~lL~ALrvLRP~---~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~ 75 (160)
T PF09613_consen 7 DEIVGGLIEVLSVALRLGDPDDAEALLDALRVLRPE---FPELDLFDGWLHIVRGDWDDALRLLRELEERAP 75 (160)
T ss_pred HHHHHHHHHHHHHHHccCChHHHHHHHHHHHHhCCC---chHHHHHHHHHHHHhCCHHHHHHHHHHHhccCC
Confidence 345777888888889999999999988888889999 999999999999999999999999888755544
No 407
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=28.52 E-value=57 Score=36.39 Aligned_cols=59 Identities=14% Similarity=0.073 Sum_probs=38.7
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCC----chHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 007571 396 NSLFSAGNISGAASKYSEALALCPMR----SKKERVVLYSNRAQCHLLMQQPLAAISDATRALC 455 (598)
Q Consensus 396 N~lfk~GdY~eAIe~YskALel~P~~----~~~~~a~ly~NRA~cylKLgdyeeAI~D~~kALe 455 (598)
..+.-.|||..|++..+- |++.... -..-..+.|+..|.||+.+++|.+|+..+...|-
T Consensus 130 Rvh~LLGDY~~Alk~l~~-idl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL~ 192 (404)
T PF10255_consen 130 RVHCLLGDYYQALKVLEN-IDLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQILL 192 (404)
T ss_pred HHHHhccCHHHHHHHhhc-cCcccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344567888888776421 1111110 0112367788899999999999999999988774
No 408
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=27.81 E-value=6.4e+02 Score=27.32 Aligned_cols=105 Identities=11% Similarity=0.066 Sum_probs=73.9
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCCc-------hHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCcCH-
Q 007571 393 LEGNSLFSAGNISGAASKYSEALALCPMRS-------KKERVVLYSNRAQCHLLMQQPLAAISDATRALCLHNPLNRHA- 464 (598)
Q Consensus 393 eeGN~lfk~GdY~eAIe~YskALel~P~~~-------~~~~a~ly~NRA~cylKLgdyeeAI~D~~kALeLdP~~~~~~- 464 (598)
..|+.+|..++|..--+...+.-.-|..+. ......+|.---+.|-.+++-.+-...|.+||.+... .+++
T Consensus 150 KLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQLLEiYAlEIQmYT~qKnNKkLK~lYeqalhiKSA-IPHPl 228 (440)
T KOG1464|consen 150 KLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQLLEIYALEIQMYTEQKNNKKLKALYEQALHIKSA-IPHPL 228 (440)
T ss_pred hHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccchhhhhHhhHhhhhhhhcccHHHHHHHHHHHHhhcc-CCchH
Confidence 367888888888776666555544443321 1234667777778888888888888899999988654 1132
Q ss_pred -HHHHHH--HHHHHHhhcHHHHHHHHHHHHHHhccCC
Q 007571 465 -KSLWRR--AQAYDMLALAKESLLDAILFINECSQSN 498 (598)
Q Consensus 465 -KAyyRR--AqAy~~LGdy~EAl~d~~kALel~~k~~ 498 (598)
-+..|- |+.++.-|+|++|..||-.|.+....+.
T Consensus 229 ImGvIRECGGKMHlreg~fe~AhTDFFEAFKNYDEsG 265 (440)
T KOG1464|consen 229 IMGVIRECGGKMHLREGEFEKAHTDFFEAFKNYDESG 265 (440)
T ss_pred HHhHHHHcCCccccccchHHHHHhHHHHHHhcccccC
Confidence 233333 6778888999999999999999877644
No 409
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=27.79 E-value=2.2e+02 Score=29.12 Aligned_cols=49 Identities=29% Similarity=0.295 Sum_probs=35.8
Q ss_pred HHHHHHHHHHHHh-----CCCCchHHHHHHHHHHHHHHH-HcCChHHHHHHHHHHHH
Q 007571 405 SGAASKYSEALAL-----CPMRSKKERVVLYSNRAQCHL-LMQQPLAAISDATRALC 455 (598)
Q Consensus 405 ~eAIe~YskALel-----~P~~~~~~~a~ly~NRA~cyl-KLgdyeeAI~D~~kALe 455 (598)
+.|...|++|+++ .|. .+.+..+..|.+.-|+ -+|+.++|+..+.+|+.
T Consensus 143 ~~a~~aY~~A~~~a~~~L~~~--~p~rLgl~LN~svF~yei~~~~~~A~~ia~~afd 197 (236)
T PF00244_consen 143 EKALEAYEEALEIAKKELPPT--HPLRLGLALNYSVFYYEILNDPEKAIEIAKQAFD 197 (236)
T ss_dssp HHHHHHHHHHHHHHHHHSCTT--SHHHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHH
T ss_pred HHHHHhhhhHHHHHhcccCCC--CcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Confidence 6778888888865 343 3667778888887665 48999999998888764
No 410
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=27.68 E-value=60 Score=26.67 Aligned_cols=48 Identities=29% Similarity=0.398 Sum_probs=37.0
Q ss_pred cCCccchhhhhhhhhhcccccHHHHHHHHHhcCCchHHHHHhcccchhhHHHHHHHHhh
Q 007571 73 HDQNIYIPYYAAHIIGSYTMNMEEFAESAVHAGVIPPLVELLRGRLTWVEQRVAVRALG 131 (598)
Q Consensus 73 ~~~~~~~~yy~ah~~gsy~~~~~~~~~~av~~~~~~~l~~~~~~~~~wve~r~~~r~l~ 131 (598)
+|.|..|=..|+..+|-+. ...++|.|.++|.--=.++=++.|+.|||
T Consensus 41 ~d~~~~vr~~a~~aL~~i~-----------~~~~~~~L~~~l~~~~~~~vr~~a~~aL~ 88 (88)
T PF13646_consen 41 KDEDPMVRRAAARALGRIG-----------DPEAIPALIKLLQDDDDEVVREAAAEALG 88 (88)
T ss_dssp TSSSHHHHHHHHHHHHCCH-----------HHHTHHHHHHHHTC-SSHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHHHhC-----------CHHHHHHHHHHHcCCCcHHHHHHHHhhcC
Confidence 4556667788888888652 23489999999988778888899999997
No 411
>PRK09687 putative lyase; Provisional
Probab=27.22 E-value=48 Score=34.77 Aligned_cols=62 Identities=19% Similarity=0.123 Sum_probs=44.8
Q ss_pred cccCCccchhhhhhhhhhcccccHHHHHHHHHhcCCchHHHHHhcccchhhHHHHHHHHhhccccCCC
Q 007571 71 LSHDQNIYIPYYAAHIIGSYTMNMEEFAESAVHAGVIPPLVELLRGRLTWVEQRVAVRALGHLATYPS 138 (598)
Q Consensus 71 ~~~~~~~~~~yy~ah~~gsy~~~~~~~~~~av~~~~~~~l~~~~~~~~~wve~r~~~r~l~h~a~~~~ 138 (598)
|+++.|..+=..|+.++|-..+.... ..-++|.|.+++-.-=.|+=++.|+.||||+.+.+.
T Consensus 62 ll~~~d~~vR~~A~~aLg~lg~~~~~------~~~a~~~L~~l~~~D~d~~VR~~A~~aLG~~~~~~~ 123 (280)
T PRK09687 62 LCSSKNPIERDIGADILSQLGMAKRC------QDNVFNILNNLALEDKSACVRASAINATGHRCKKNP 123 (280)
T ss_pred HHhCCCHHHHHHHHHHHHhcCCCccc------hHHHHHHHHHHHhcCCCHHHHHHHHHHHhccccccc
Confidence 34577788888888888876553221 224678888886666677888899999999977553
No 412
>TIGR00985 3a0801s04tom mitochondrial import receptor subunit translocase of outer membrane 20 kDa subunit.
Probab=27.19 E-value=1.6e+02 Score=28.45 Aligned_cols=39 Identities=28% Similarity=0.356 Sum_probs=33.4
Q ss_pred HHHHHHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhCCCC
Q 007571 383 IKQAAALVVKLEGNSLFSAG-NISGAASKYSEALALCPMR 421 (598)
Q Consensus 383 e~~~~A~~lKeeGN~lfk~G-dY~eAIe~YskALel~P~~ 421 (598)
+...--..-...|..+...| ++.+|+.+|.+||..+|..
T Consensus 85 e~E~~Fl~eV~~GE~L~~~g~~~~ega~hf~nAl~Vc~qP 124 (148)
T TIGR00985 85 EKEAFFLQEVQLGEELMAQGTNVDEGAVHFYNALKVYPQP 124 (148)
T ss_pred HHHHHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCCH
Confidence 34555666778999999999 9999999999999999985
No 413
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=27.00 E-value=4e+02 Score=25.96 Aligned_cols=82 Identities=17% Similarity=0.102 Sum_probs=48.7
Q ss_pred HcCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHH-hCCCCCcCHHHHHHHHHHHHHhh
Q 007571 400 SAGNISGAASKYSEALALCPMRSKKERVVLYSNRAQCHLLMQQPLAAISDATRALC-LHNPLNRHAKSLWRRAQAYDMLA 478 (598)
Q Consensus 400 k~GdY~eAIe~YskALel~P~~~~~~~a~ly~NRA~cylKLgdyeeAI~D~~kALe-LdP~~~~~~KAyyRRAqAy~~LG 478 (598)
.-|+...-+.+|-+.= ...=|.++|.-++-...-.+.+...-+-|. -+.. ++..++..|.||..+|
T Consensus 68 ~C~NlKrVi~C~~~~n----------~~se~vD~ALd~lv~~~kkDqLdki~~~l~kn~~~---~p~~L~kia~Ay~klg 134 (161)
T PF09205_consen 68 KCGNLKRVIECYAKRN----------KLSEYVDLALDILVKQGKKDQLDKIYNELKKNEEI---NPEFLVKIANAYKKLG 134 (161)
T ss_dssp G-S-THHHHHHHHHTT-------------HHHHHHHHHHHHTT-HHHHHHHHHHH-----S----HHHHHHHHHHHHHTT
T ss_pred hhcchHHHHHHHHHhc----------chHHHHHHHHHHHHHhccHHHHHHHHHHHhhccCC---CHHHHHHHHHHHHHhc
Confidence 3455555666653321 134477788776655555555554444433 2233 7899999999999999
Q ss_pred cHHHHHHHHHHHHHHh
Q 007571 479 LAKESLLDAILFINEC 494 (598)
Q Consensus 479 dy~EAl~d~~kALel~ 494 (598)
+..+|-.-+.+|-+.-
T Consensus 135 ~~r~~~ell~~ACekG 150 (161)
T PF09205_consen 135 NTREANELLKEACEKG 150 (161)
T ss_dssp -HHHHHHHHHHHHHTT
T ss_pred chhhHHHHHHHHHHhc
Confidence 9999998888887653
No 414
>cd02656 MIT MIT: domain contained within Microtubule Interacting and Trafficking molecules. The MIT domain is found in sorting nexins, the nuclear thiol protease PalBH, the AAA protein spastin and archaebacterial proteins with similar domain architecture, vacuolar sorting proteins and others. The molecular function of the MIT domain is unclear.
Probab=26.78 E-value=3e+02 Score=22.70 Aligned_cols=30 Identities=20% Similarity=-0.072 Sum_probs=20.7
Q ss_pred HHHHHHHHHHhhcHHHHHHHHHHHHHHhcc
Q 007571 467 LWRRAQAYDMLALAKESLLDAILFINECSQ 496 (598)
Q Consensus 467 yyRRAqAy~~LGdy~EAl~d~~kALel~~k 496 (598)
+...|.-....|+|++|+..|..+++.+..
T Consensus 9 l~~~Av~~D~~g~~~~Al~~Y~~a~e~l~~ 38 (75)
T cd02656 9 LIKQAVKEDEDGNYEEALELYKEALDYLLQ 38 (75)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 334455555568888888888888877664
No 415
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=26.65 E-value=3.3e+02 Score=28.59 Aligned_cols=58 Identities=16% Similarity=-0.118 Sum_probs=49.2
Q ss_pred HHHHcCChHHHHHHHHHHHHhCCCCCcCHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHhcc
Q 007571 436 CHLLMQQPLAAISDATRALCLHNPLNRHAKSLWRRAQAYDMLALAKESLLDAILFINECSQ 496 (598)
Q Consensus 436 cylKLgdyeeAI~D~~kALeLdP~~~~~~KAyyRRAqAy~~LGdy~EAl~d~~kALel~~k 496 (598)
-+++-+...+||.+...-++-+|. +.-.-.-+-+.|.-.|+|+.|...++-+-++.++
T Consensus 10 eLL~~~sL~dai~~a~~qVkakPt---da~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~ 67 (273)
T COG4455 10 ELLDDNSLQDAIGLARDQVKAKPT---DAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQ 67 (273)
T ss_pred HHHHhccHHHHHHHHHHHHhcCCc---cccchhHHHHHHhhcchHHHHHHHHHHHhhcCcc
Confidence 467778899999999999999999 5555555567889999999999999999988875
No 416
>KOG0889 consensus Histone acetyltransferase SAGA, TRRAP/TRA1 component, PI-3 kinase superfamily [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=25.89 E-value=6.2e+02 Score=35.88 Aligned_cols=100 Identities=8% Similarity=0.028 Sum_probs=70.7
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-----chHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCC
Q 007571 387 AALVVKLEGNSLFSAGNISGAASKYSEALALCPMR-----SKKERVVLYSNRAQCHLLMQQPLAAISDATRALCLHNPLN 461 (598)
Q Consensus 387 ~A~~lKeeGN~lfk~GdY~eAIe~YskALel~P~~-----~~~~~a~ly~NRA~cylKLgdyeeAI~D~~kALeLdP~~~ 461 (598)
.-.+++++...++... ..+..+++...+- ..+..+..+.-+|.-+.++|++++|=+.+..|++++-.
T Consensus 2773 aF~K~req~~c~l~~~------~e~~~gLevi~sTNl~yF~~~q~aeff~lkG~f~~kL~~~eeAn~~fs~AvQi~~~-- 2844 (3550)
T KOG0889|consen 2773 AFQKLREQAKCYLQNK------NELKTGLEVIESTNLMYFSDRQKAEFFTLKGMFLEKLGKFEEANKAFSAAVQIDDG-- 2844 (3550)
T ss_pred HHHHHHHHHHHHhcCh------HHHHHHHHHHhcccHHHHhhHHHHHHHHhhhHHHHHhcCcchhHHHHHHHHHHHhh--
Confidence 4455666666665544 3455555544331 33567899999999999999999999999999999998
Q ss_pred cCHHHHHHHHHHHHHh----h----cHHHHHHHHHHHHHHhc
Q 007571 462 RHAKSLWRRAQAYDML----A----LAKESLLDAILFINECS 495 (598)
Q Consensus 462 ~~~KAyyRRAqAy~~L----G----dy~EAl~d~~kALel~~ 495 (598)
.+|+++.-|.-+... + --..|+.+|-+|.....
T Consensus 2845 -l~KaW~~Wg~y~~~~f~~e~~ni~~a~~avsCyLqA~~~~~ 2885 (3550)
T KOG0889|consen 2845 -LGKAWAEWGKYLDNRFNKEPVNISFACNAVSCYLQAARLYN 2885 (3550)
T ss_pred -hHHHHHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhcccc
Confidence 899998888755443 1 13456666777766654
No 417
>KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only]
Probab=25.79 E-value=3.3e+02 Score=34.71 Aligned_cols=107 Identities=15% Similarity=0.006 Sum_probs=82.2
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---chHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHh------
Q 007571 386 AAALVVKLEGNSLFSAGNISGAASKYSEALALCPMR---SKKERVVLYSNRAQCHLLMQQPLAAISDATRALCL------ 456 (598)
Q Consensus 386 ~~A~~lKeeGN~lfk~GdY~eAIe~YskALel~P~~---~~~~~a~ly~NRA~cylKLgdyeeAI~D~~kALeL------ 456 (598)
..+....+.|.....+|.+.+|.+ ..+++.+..+- .......+|.-+|..+.+++++++|+..+.+|.-+
T Consensus 930 ~~a~~~~e~gq~~~~e~~~~~~~~-~~~slnl~~~v~~~~h~~~~~~~~~La~l~~~~~d~~~Ai~~~~ka~ii~eR~~g 1008 (1236)
T KOG1839|consen 930 SEAKDSPEQGQEALLEDGFSEAYE-LPESLNLLNNVMGVLHPEVASKYRSLAKLSNRLGDNQEAIAQQRKACIISERVLG 1008 (1236)
T ss_pred chhhhhhhhhhhhhcccchhhhhh-hhhhhhHHHHhhhhcchhHHHHHHHHHHHHhhhcchHHHHHhcccceeeechhcc
Confidence 467788899999999999998888 55555554321 12345889999999999999999999999888644
Q ss_pred -CCCCCcCHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHhc
Q 007571 457 -HNPLNRHAKSLWRRAQAYDMLALAKESLLDAILFINECS 495 (598)
Q Consensus 457 -dP~~~~~~KAyyRRAqAy~~LGdy~EAl~d~~kALel~~ 495 (598)
++.. ...+|-.++......+....|+..+..+..+..
T Consensus 1009 ~ds~~--t~~~y~nlal~~f~~~~~~~al~~~~ra~~l~~ 1046 (1236)
T KOG1839|consen 1009 KDSPN--TKLAYGNLALYEFAVKNLSGALKSLNRALKLKL 1046 (1236)
T ss_pred CCCHH--HHHHhhHHHHHHHhccCccchhhhHHHHHHhhc
Confidence 3221 567888888888888888889888888877654
No 418
>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]
Probab=25.68 E-value=1.2e+02 Score=33.12 Aligned_cols=79 Identities=10% Similarity=-0.143 Sum_probs=65.1
Q ss_pred HHHHHHHhCCCCchHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCcCHHHHHH-HHHHHHHhhcHHHHHHHHH
Q 007571 410 KYSEALALCPMRSKKERVVLYSNRAQCHLLMQQPLAAISDATRALCLHNPLNRHAKSLWR-RAQAYDMLALAKESLLDAI 488 (598)
Q Consensus 410 ~YskALel~P~~~~~~~a~ly~NRA~cylKLgdyeeAI~D~~kALeLdP~~~~~~KAyyR-RAqAy~~LGdy~EAl~d~~ 488 (598)
.|.++-...|.+ +.+|+.-+.--.+.+-|.+--.-|.++++.+|. ++..|.. .+.-+...++++.|..-|.
T Consensus 95 ~~~R~tnkff~D-----~k~w~~y~~Y~~k~k~y~~~~nI~~~~l~khP~---nvdlWI~~c~~e~~~~ani~s~Ra~f~ 166 (435)
T COG5191 95 ELYRSTNKFFND-----PKIWSQYAAYVIKKKMYGEMKNIFAECLTKHPL---NVDLWIYCCAFELFEIANIESSRAMFL 166 (435)
T ss_pred eeehhhhcCCCC-----cHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC---CceeeeeeccchhhhhccHHHHHHHHH
Confidence 345555566777 778887777677788899999999999999999 8887776 5667888899999999999
Q ss_pred HHHHHhcc
Q 007571 489 LFINECSQ 496 (598)
Q Consensus 489 kALel~~k 496 (598)
+++...+.
T Consensus 167 ~glR~N~~ 174 (435)
T COG5191 167 KGLRMNSR 174 (435)
T ss_pred hhhccCCC
Confidence 99999776
No 419
>smart00745 MIT Microtubule Interacting and Trafficking molecule domain.
Probab=25.26 E-value=3.6e+02 Score=22.20 Aligned_cols=28 Identities=18% Similarity=-0.102 Sum_probs=19.0
Q ss_pred HHHHHHHHhhcHHHHHHHHHHHHHHhcc
Q 007571 469 RRAQAYDMLALAKESLLDAILFINECSQ 496 (598)
Q Consensus 469 RRAqAy~~LGdy~EAl~d~~kALel~~k 496 (598)
.+|..+...|++++|+..|..+++.+..
T Consensus 13 ~~Av~~d~~g~~~eAl~~Y~~a~e~l~~ 40 (77)
T smart00745 13 SKALKADEAGDYEEALELYKKAIEYLLE 40 (77)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 3444555567888888888887777654
No 420
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=25.03 E-value=8.1e+02 Score=27.03 Aligned_cols=43 Identities=19% Similarity=0.081 Sum_probs=26.1
Q ss_pred hHHHHHHHHHHHHhCCCCCcCHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHhcc
Q 007571 443 PLAAISDATRALCLHNPLNRHAKSLWRRAQAYDMLALAKESLLDAILFINECSQ 496 (598)
Q Consensus 443 yeeAI~D~~kALeLdP~~~~~~KAyyRRAqAy~~LGdy~EAl~d~~kALel~~k 496 (598)
..+||....+|+..|...| +.+| +.-|..|+++|..+|+...+
T Consensus 7 l~kaI~lv~kA~~eD~a~n-Y~eA----------~~lY~~aleYF~~~lKYE~~ 49 (439)
T KOG0739|consen 7 LQKAIDLVKKAIDEDNAKN-YEEA----------LRLYQNALEYFLHALKYEAN 49 (439)
T ss_pred HHHHHHHHHHHhhhcchhc-hHHH----------HHHHHHHHHHHHHHHHhhhc
Confidence 4678888888887765411 2222 22355677777777777543
No 421
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=24.15 E-value=2.9e+02 Score=33.30 Aligned_cols=80 Identities=13% Similarity=0.043 Sum_probs=43.6
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCcCHHHHHH
Q 007571 390 VVKLEGNSLFSAGNISGAASKYSEALALCPMRSKKERVVLYSNRAQCHLLMQQPLAAISDATRALCLHNPLNRHAKSLWR 469 (598)
Q Consensus 390 ~lKeeGN~lfk~GdY~eAIe~YskALel~P~~~~~~~a~ly~NRA~cylKLgdyeeAI~D~~kALeLdP~~~~~~KAyyR 469 (598)
++++.|..++....+++|.+.|++.=. .-|...|++++.+|++-..... -=|. +.+.+=.
T Consensus 798 A~r~ig~~fa~~~~We~A~~yY~~~~~-------------~e~~~ecly~le~f~~LE~la~----~Lpe---~s~llp~ 857 (1189)
T KOG2041|consen 798 AFRNIGETFAEMMEWEEAAKYYSYCGD-------------TENQIECLYRLELFGELEVLAR----TLPE---DSELLPV 857 (1189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccc-------------hHhHHHHHHHHHhhhhHHHHHH----hcCc---ccchHHH
Confidence 344455555555555555555543221 2345556666666555332221 1255 5556666
Q ss_pred HHHHHHHhhcHHHHHHHHHH
Q 007571 470 RAQAYDMLALAKESLLDAIL 489 (598)
Q Consensus 470 RAqAy~~LGdy~EAl~d~~k 489 (598)
.|+.+...|.-++|...|.+
T Consensus 858 ~a~mf~svGMC~qAV~a~Lr 877 (1189)
T KOG2041|consen 858 MADMFTSVGMCDQAVEAYLR 877 (1189)
T ss_pred HHHHHHhhchHHHHHHHHHh
Confidence 77777777777777766643
No 422
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=23.85 E-value=6.7e+02 Score=30.23 Aligned_cols=43 Identities=12% Similarity=-0.195 Sum_probs=27.8
Q ss_pred ChHHHHHHHHHHHHhCCCCCcCHHHHHHHHHHHHHhhcHHHHHHHHHHH
Q 007571 442 QPLAAISDATRALCLHNPLNRHAKSLWRRAQAYDMLALAKESLLDAILF 490 (598)
Q Consensus 442 dyeeAI~D~~kALeLdP~~~~~~KAyyRRAqAy~~LGdy~EAl~d~~kA 490 (598)
+|.+|...+++--++- ...|+.-|+-+....+|+||.+.|.+|
T Consensus 788 ~W~eAFalAe~hPe~~------~dVy~pyaqwLAE~DrFeEAqkAfhkA 830 (1081)
T KOG1538|consen 788 RWDEAFALAEKHPEFK------DDVYMPYAQWLAENDRFEEAQKAFHKA 830 (1081)
T ss_pred cchHhHhhhhhCcccc------ccccchHHHHhhhhhhHHHHHHHHHHh
Confidence 3555555444433333 346777888888888888888777665
No 423
>COG5624 TAF61 Transcription initiation factor TFIID, subunit TAF12 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=23.80 E-value=31 Score=38.23 Aligned_cols=21 Identities=38% Similarity=0.548 Sum_probs=17.4
Q ss_pred cccCCccchhhhhhhhhh-ccc
Q 007571 71 LSHDQNIYIPYYAAHIIG-SYT 91 (598)
Q Consensus 71 ~~~~~~~~~~yy~ah~~g-sy~ 91 (598)
|-+.-|||||-|++|||- ||.
T Consensus 447 lErnwnIr~pGf~~d~I~~s~r 468 (505)
T COG5624 447 LERNWNIRCPGFVDDIIHMSYR 468 (505)
T ss_pred eccccceecCcchHHHHHHHHH
Confidence 456669999999999998 763
No 424
>PF07631 PSD4: Protein of unknown function (DUF1592); InterPro: IPR013042 A region of similarity shared by several Rhodopirellula baltica cytochrome-like proteins that are predicted to be secreted. These proteins also contain IPR011478 from INTERPRO, IPR013036 from INTERPRO, IPR013039 from INTERPRO and IPR013043 from INTERPRO.
Probab=23.30 E-value=70 Score=29.92 Aligned_cols=51 Identities=25% Similarity=0.441 Sum_probs=45.6
Q ss_pred CCccchhhhhhhhhhcccccHHHHHHHHHhcCCchHHHHHhcccchhhHHHHHH
Q 007571 74 DQNIYIPYYAAHIIGSYTMNMEEFAESAVHAGVIPPLVELLRGRLTWVEQRVAV 127 (598)
Q Consensus 74 ~~~~~~~yy~ah~~gsy~~~~~~~~~~av~~~~~~~l~~~~~~~~~wve~r~~~ 127 (598)
|...| |+|-.++..+..--...|-+..++.+ .|+.+||...-|+|-++.|-
T Consensus 74 d~~~~-p~~~~~l~~~m~~E~~~f~~~vl~~n--~~~~~ll~sd~tfvn~~LA~ 124 (128)
T PF07631_consen 74 DPEKF-PEFSPDLREAMREETDEFFEHVLEEN--GSVSELLTSDYTFVNQRLAK 124 (128)
T ss_pred Chhhc-cccCHHHHHHHHHHHHHHHHHHHHcC--CCHHHHhcCCceeECHHHHH
Confidence 44556 99999999999999999999999999 78999999999999999883
No 425
>cd02684 MIT_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with an n-terminal serine/threonine kinase domain. The molecular function of the MIT domain is unclear.
Probab=23.18 E-value=3.1e+02 Score=23.21 Aligned_cols=28 Identities=14% Similarity=-0.140 Sum_probs=18.2
Q ss_pred HHHHHHHHhhcHHHHHHHHHHHHHHhcc
Q 007571 469 RRAQAYDMLALAKESLLDAILFINECSQ 496 (598)
Q Consensus 469 RRAqAy~~LGdy~EAl~d~~kALel~~k 496 (598)
.+|......|+|++|+..|..+++.+..
T Consensus 11 ~~Av~~D~~g~y~eA~~lY~~ale~~~~ 38 (75)
T cd02684 11 VQAVKKDQRGDAAAALSLYCSALQYFVP 38 (75)
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHHHHH
Confidence 3444455557777777777777776653
No 426
>PF08429 PLU-1: PLU-1-like protein; InterPro: IPR013637 This domain is found in the central region of lysine-specific demethylases, which are nuclear proteins that may have a role in DNA-binding and transcription, and are associated with malignant cancer phenotypes []. The domain is also found in various other Jumonji/ARID domain-containing proteins (see IPR013129 from INTERPRO, IPR001606 from INTERPRO). ; GO: 0016706 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors, 0055114 oxidation-reduction process
Probab=23.01 E-value=7.9e+02 Score=25.99 Aligned_cols=154 Identities=18% Similarity=0.242 Sum_probs=82.5
Q ss_pred CChHHHHHHHhhhhccchhhhhhhhhhhhhhcCCc--chhHHhhhhhhhhhhhHhhhcccccCCccc---eehhhccccc
Q 007571 268 SCPGLIEALCNIARSSDDWQYMAIDCLLWLLQDPS--TCHKVIDKAVPTLIDLAEITNLGDHKKLGD---SIVNVLQDCI 342 (598)
Q Consensus 268 ~~~~~i~~lc~isrssdd~q~maidcll~l~~D~~--t~~kvld~a~~~lvDl~eL~~Lg~~~k~GE---~~~~~L~pdy 342 (598)
.||| |..|-.+...-++||..|.+.|-. -.+.+ .-...++..-.+.||+.++..+.......+ .+...+.
T Consensus 101 ~~pE-i~~L~~l~~~ve~f~~~a~~~L~~-~~~~~~~~le~Ll~~g~s~~v~lpel~~L~~~l~~~~W~~~~~~~~~--- 175 (335)
T PF08429_consen 101 DCPE-IDQLKELLEEVEEFQSRAQEALSD-PESPSLEELEELLEEGESFGVDLPELDQLRRRLEQLEWLEEAREILS--- 175 (335)
T ss_pred eCch-HHHHHHHHHHHHHHHHHHHHHHhc-cccCCHHHHHHHHHhcccCceeChhHHHHHHHHHHHHHHHHHHHHhc---
Confidence 4788 788888889999999999998877 22222 244566777777888777766643322221 1111111
Q ss_pred cccCCCCCCCCccHHHHHHHHHHHhHhhH---HhhcCChHHHHHHHHHHHHHHHHHHHHHH--cCCHHHHHHHHHHHHHh
Q 007571 343 QLQGTVRSSPSNRSKEQIEELLNSRQRLK---WEKNMLKEDLHIKQAAALVVKLEGNSLFS--AGNISGAASKYSEALAL 417 (598)
Q Consensus 343 ~~g~~g~~ip~~~tl~~~~ELl~~kek~k---~e~~ms~eElee~~~~A~~lKeeGN~lfk--~GdY~eAIe~YskALel 417 (598)
-++.-++....+++....... .... -..+++.+..+..+-+++..+++ .-.+..--...+++ +.
T Consensus 176 --------~~~~~tL~~l~~Ll~~g~~l~~~~~~~~--~~~L~~~l~~~~~We~ka~~~L~~~~~~l~~Le~l~~~~-~~ 244 (335)
T PF08429_consen 176 --------DPDRLTLDELRELLDEGERLGIPSDEKL--MAELQELLKQGEEWEEKAKELLSRPRVSLEQLEALLEEA-EN 244 (335)
T ss_pred --------cccCCcHHHHHHHHHhhhcCCCccchHH--HHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHH-hc
Confidence 111234444444444221110 0011 12344566777777777777777 33455544444444 44
Q ss_pred CCCCchHHHHHHHHHHHHHHHHcCC
Q 007571 418 CPMRSKKERVVLYSNRAQCHLLMQQ 442 (598)
Q Consensus 418 ~P~~~~~~~a~ly~NRA~cylKLgd 442 (598)
.|-. ...+..+-.++-+...
T Consensus 245 ipv~-----~~~~~~L~~~l~kak~ 264 (335)
T PF08429_consen 245 IPVS-----LPSLDKLKDALQKAKE 264 (335)
T ss_pred CCCc-----hHHHHHHHHHHHHHHH
Confidence 4554 3444444444444333
No 427
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=22.62 E-value=3e+02 Score=26.72 Aligned_cols=49 Identities=20% Similarity=0.053 Sum_probs=41.4
Q ss_pred HHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC
Q 007571 405 SGAASKYSEALALCPMRSKKERVVLYSNRAQCHLLMQQPLAAISDATRALCLHNP 459 (598)
Q Consensus 405 ~eAIe~YskALel~P~~~~~~~a~ly~NRA~cylKLgdyeeAI~D~~kALeLdP~ 459 (598)
...++...+.+...|+ +..|.|.+.++..+|+.++|.....++..+-|.
T Consensus 128 ~~~~~~a~~~l~~~P~------~~~~~~~a~~l~~~G~~~eA~~~~~~~~~lyP~ 176 (193)
T PF11846_consen 128 EAYIEWAERLLRRRPD------PNVYQRYALALALLGDPEEARQWLARARRLYPA 176 (193)
T ss_pred HHHHHHHHHHHHhCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCc
Confidence 4445556677777787 689999999999999999999999999999885
No 428
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=22.56 E-value=2.2e+02 Score=35.70 Aligned_cols=52 Identities=19% Similarity=0.220 Sum_probs=44.8
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 007571 390 VVKLEGNSLFSAGNISGAASKYSEALALCPMRSKKERVVLYSNRAQCHLLMQQPLAAISDATRAL 454 (598)
Q Consensus 390 ~lKeeGN~lfk~GdY~eAIe~YskALel~P~~~~~~~a~ly~NRA~cylKLgdyeeAI~D~~kAL 454 (598)
.+..-|+.+|..|.|+.|--.|+. .+-|..+|..+..+|+|..|+..+++|=
T Consensus 1196 ~i~~vGdrcf~~~~y~aAkl~y~~-------------vSN~a~La~TLV~LgeyQ~AVD~aRKAn 1247 (1666)
T KOG0985|consen 1196 NIQQVGDRCFEEKMYEAAKLLYSN-------------VSNFAKLASTLVYLGEYQGAVDAARKAN 1247 (1666)
T ss_pred hHHHHhHHHhhhhhhHHHHHHHHH-------------hhhHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 467889999999999999888863 4557889999999999999999998874
No 429
>PF07219 HemY_N: HemY protein N-terminus; InterPro: IPR010817 This entry represents the N terminus (approximately 150 residues) of bacterial HemY porphyrin biosynthesis proteins. These are membrane protein involved in a late step of protoheme IX synthesis [].
Probab=22.48 E-value=3.9e+02 Score=23.84 Aligned_cols=51 Identities=14% Similarity=-0.098 Sum_probs=39.0
Q ss_pred HHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCcCHHHHHHHHHHHHHhhc
Q 007571 426 RVVLYSNRAQCHLLMQQPLAAISDATRALCLHNPLNRHAKSLWRRAQAYDMLAL 479 (598)
Q Consensus 426 ~a~ly~NRA~cylKLgdyeeAI~D~~kALeLdP~~~~~~KAyyRRAqAy~~LGd 479 (598)
+.....+.|..-+-.|+|..|.+...++-+..+. ..-+|.--|++-...||
T Consensus 58 ka~~al~~Gl~al~~G~~~~A~k~~~~a~~~~~~---~~l~~L~AA~AA~~~gd 108 (108)
T PF07219_consen 58 KAQRALSRGLIALAEGDWQRAEKLLAKAAKLSDN---PLLNYLLAARAAQAQGD 108 (108)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC---HHHHHHHHHHHHHHcCC
Confidence 3455566778888899999999999999888766 56666666777766664
No 430
>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=22.20 E-value=1.2e+02 Score=31.94 Aligned_cols=83 Identities=22% Similarity=0.229 Sum_probs=49.2
Q ss_pred cccCCccchhhhhhhhhhcccccHHHHHHHHHhcCCchHHHHHhcccchhh---HHHHHHHHhhccccCCCchhhhhhhH
Q 007571 71 LSHDQNIYIPYYAAHIIGSYTMNMEEFAESAVHAGVIPPLVELLRGRLTWV---EQRVAVRALGHLATYPSTFPTVASHA 147 (598)
Q Consensus 71 ~~~~~~~~~~yy~ah~~gsy~~~~~~~~~~av~~~~~~~l~~~~~~~~~wv---e~r~~~r~l~h~a~~~~~f~~~~~~~ 147 (598)
++..++.||++-|++|+..---.........+ .++++.++..|+..++== -|.+|+++|++|...+ .|-.+.-..
T Consensus 113 ll~~~D~~i~~~a~~iLt~Ll~~~~~~~~~~~-~~~l~~ll~~L~~~l~~~~~~~~~~av~~L~~LL~~~-~~R~~f~~~ 190 (312)
T PF03224_consen 113 LLDRNDSFIQLKAAFILTSLLSQGPKRSEKLV-KEALPKLLQWLSSQLSSSDSELQYIAVQCLQNLLRSK-EYRQVFWKS 190 (312)
T ss_dssp H-S-SSHHHHHHHHHHHHHHHTSTTT--HHHH-HHHHHHHHHHHH-TT-HHHH---HHHHHHHHHHHTSH-HHHHHHHTH
T ss_pred HhcCCCHHHHHHHHHHHHHHHHcCCccccchH-HHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHhCcc-hhHHHHHhc
Confidence 45566899999999998766544444444444 677799999888755431 1389999999997543 333333233
Q ss_pred HHHHHHHH
Q 007571 148 EILELSIQ 155 (598)
Q Consensus 148 ~~~~~~~~ 155 (598)
+.+..-+.
T Consensus 191 ~~v~~l~~ 198 (312)
T PF03224_consen 191 NGVSPLFD 198 (312)
T ss_dssp HHHHHHHH
T ss_pred CcHHHHHH
Confidence 44443333
No 431
>KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport]
Probab=21.93 E-value=1.2e+02 Score=33.73 Aligned_cols=107 Identities=23% Similarity=0.292 Sum_probs=72.7
Q ss_pred chhhhhHhHhhcCCCCcccccccHHHHHHHHH-Hhhc-----------------CCccc------------cccCCccch
Q 007571 30 LPISGLWNTAMAHPNDPEFIELGIFECMAALI-WKGL-----------------KNRRW------------LSHDQNIYI 79 (598)
Q Consensus 30 ~~~~~~~~~~~~~p~~~~~~~lg~~~~~~~l~-~~~~-----------------~~~~~------------~~~~~~~~~ 79 (598)
..+.-+||.|--.-+---.-.+|..+-..+|- ||-+ .||.= |+.-.|.-+
T Consensus 145 naVgCitnLaT~d~nk~kiA~sGaL~pltrLakskdirvqrnatgaLlnmThs~EnRr~LV~aG~lpvLVsll~s~d~dv 224 (550)
T KOG4224|consen 145 NAVGCITNLATFDSNKVKIARSGALEPLTRLAKSKDIRVQRNATGALLNMTHSRENRRVLVHAGGLPVLVSLLKSGDLDV 224 (550)
T ss_pred eehhhhhhhhccccchhhhhhccchhhhHhhcccchhhHHHHHHHHHHHhhhhhhhhhhhhccCCchhhhhhhccCChhH
Confidence 46777888887766666677777777766642 1111 12222 344556678
Q ss_pred hhhhhhhhhcccccHHHHHHHHHhcC--CchHHHHHhcccchhhHHHHHHHHhhccccCCC
Q 007571 80 PYYAAHIIGSYTMNMEEFAESAVHAG--VIPPLVELLRGRLTWVEQRVAVRALGHLATYPS 138 (598)
Q Consensus 80 ~yy~ah~~gsy~~~~~~~~~~av~~~--~~~~l~~~~~~~~~wve~r~~~r~l~h~a~~~~ 138 (598)
-||+.|.||-.-... ..-.+-+++| +||.|+.|++.-=.=|. =.|--||+.|||..+
T Consensus 225 qyycttaisnIaVd~-~~Rk~Laqaep~lv~~Lv~Lmd~~s~kvk-cqA~lALrnlasdt~ 283 (550)
T KOG4224|consen 225 QYYCTTAISNIAVDR-RARKILAQAEPKLVPALVDLMDDGSDKVK-CQAGLALRNLASDTE 283 (550)
T ss_pred HHHHHHHhhhhhhhH-HHHHHHHhcccchHHHHHHHHhCCChHHH-HHHHHHHhhhcccch
Confidence 899999999765543 2334567888 99999999987766653 456678999998753
No 432
>TIGR01680 Veg_Stor_Prot vegetative storage protein. The proteins represented by this model are close relatives of the plant acid phosphatases (TIGR01675), are limited to members of the Phaseoleae including Glycine max (soybean) and Phaseolus vulgaris (kidney bean). These proteins are highly expressed in the leaves of repeatedly depodded plants. VSP differs most strinkingly from the acid phosphatases in the lack of the conserved nucleophilic aspartate residue in the N-terminus, thus, they should be inactive as phosphatases. This issue was confused by the publication in 1992 of an article claiming activity for the Glycine max VSP. In 1994 this assertion was refuted by the separation of the activity from the VSP.
Probab=21.92 E-value=55 Score=34.70 Aligned_cols=37 Identities=32% Similarity=0.510 Sum_probs=27.6
Q ss_pred hhhhhhhhhhcccccHHHHHHHHH---hcCCchHHHHHhc
Q 007571 79 IPYYAAHIIGSYTMNMEEFAESAV---HAGVIPPLVELLR 115 (598)
Q Consensus 79 ~~yy~ah~~gsy~~~~~~~~~~av---~~~~~~~l~~~~~ 115 (598)
+|||+.|..|.=+.+.+.|.+.=| ++-+||+-++|++
T Consensus 116 ~pY~~~~~~g~e~~~~~~w~~~Wv~~~~ApAlp~al~ly~ 155 (275)
T TIGR01680 116 IPYYKKHGYGSEKFDSELYDEEFVNKGEAPALPETLKNYN 155 (275)
T ss_pred HHHHHHhcCCCCcCChhhhhHHHHhcccCCCChHHHHHHH
Confidence 699999999987777777773333 5566888888764
No 433
>PF02841 GBP_C: Guanylate-binding protein, C-terminal domain; InterPro: IPR003191 Guanylate-binding protein is a GTPase that is induced by interferon (IFN)-gamma. GTPases induced by IFN-gamma are key to the protective immunity against microbial and viral pathogens. These GTPases are classified into three groups: the small 47-kd GTPases, the Mx proteins, and the large 65- to 67-kd GTPases. Guanylate-binding proteins (GBP) fall into the last class. In humans, there are seven GBPs (hGBP1-7) []. Structurally, hGBP1 consists of two domains: a compact globular N-terminal domain harbouring the GTPase function (IPR015894 from INTERPRO), and an alpha-helical finger-like C-terminal domain. Human GBP1 is secreted from cells without the need of a leader peptide, and has been shown to exhibit antiviral activity against Vesicular stomatitis virus and Encephalomyocarditis virus, as well as being able to regulate the inhibition of proliferation and invasion of endothelial cells in response to IFN-gamma [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1DG3_A 2D4H_A 2B8W_B 2B92_A 2BC9_A 1F5N_A.
Probab=21.57 E-value=79 Score=33.35 Aligned_cols=117 Identities=24% Similarity=0.283 Sum_probs=59.3
Q ss_pred hcccccHHHHHHH------HHhcCCchHHHHHhcccchhhHHHHHH-HHhhccccCCCchhhhhhhH-HHHHHHHHHHhh
Q 007571 88 GSYTMNMEEFAES------AVHAGVIPPLVELLRGRLTWVEQRVAV-RALGHLATYPSTFPTVASHA-EILELSIQLAMS 159 (598)
Q Consensus 88 gsy~~~~~~~~~~------av~~~~~~~l~~~~~~~~~wve~r~~~-r~l~h~a~~~~~f~~~~~~~-~~~~~~~~~~~~ 159 (598)
|.-|||-..|+.. |+.+|.||-+=-.. -.+.=.|-+.|| .|+. .|+..+..+...+ +-++-=..+=..
T Consensus 1 gG~~vtG~~L~~L~~~Yv~aIn~G~vP~iesa~-~~~~e~e~~~A~~~A~~---~Y~~~m~~~~~~P~~~~~eL~~~H~~ 76 (297)
T PF02841_consen 1 GGITVTGPMLAELVKSYVDAINSGSVPCIESAW-QAVAEAENRAAVEKAVE---HYEEQMEQRVKLPTETLEELLELHEQ 76 (297)
T ss_dssp TSEB-BHHHHHHHHHHHHHHHHTTS--BHHHHH-HHHHHHHHHHHHHHHHH---HHHHHHHHH--SS-SSHHHHHHHHHH
T ss_pred CCcccccHHHHHHHHHHHHHHhCCCCCCchHHH-HHHHHHHHHHHHHHHHH---HHHHHHHHHhCCCccCHHHHHHHHHH
Confidence 5556666666654 67999998763211 111112444444 3443 3555444443222 212222333455
Q ss_pred HHHHHHHhhh--hcccccchhhhhhhhccCCCcccccccHHHHHhhhhhhHH
Q 007571 160 SLEIVYSHFY--QYFDRRLSYHCDLLTRGMGGVEMESRKAEEWASQLQCWSL 209 (598)
Q Consensus 160 ~~~~~~~~~~--~~~~~~~~y~~~l~~~~~~~~~~~~~~ae~w~~ql~c~s~ 209 (598)
|.....+.|- .+.|.+.+|...|..+ +..--.+=.+--+.+|...|..+
T Consensus 77 ~~~~A~~~F~~~s~~d~~~~~~~~L~~~-i~~~~~~~~~~N~~~s~~~C~~~ 127 (297)
T PF02841_consen 77 CEKEALEVFMKRSFGDEDQKYQKKLMEQ-IEKKFEEFCKQNEEASEKKCQAL 127 (297)
T ss_dssp HHHHHHHHHHHH----GGGHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCcHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHH
Confidence 6666666666 6777888999888764 33322222445578999999986
No 434
>KOG4056 consensus Translocase of outer mitochondrial membrane complex, subunit TOM20 [Intracellular trafficking, secretion, and vesicular transport]
Probab=21.38 E-value=2.8e+02 Score=26.76 Aligned_cols=37 Identities=19% Similarity=0.298 Sum_probs=32.5
Q ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 007571 385 QAAALVVKLEGNSLFSAGNISGAASKYSEALALCPMR 421 (598)
Q Consensus 385 ~~~A~~lKeeGN~lfk~GdY~eAIe~YskALel~P~~ 421 (598)
...-..-.+.|..++.+|+++++..++..||.++|..
T Consensus 78 E~~Fmqqv~lGE~L~~qg~~e~ga~h~~nAi~vcgqp 114 (143)
T KOG4056|consen 78 EKFFMQQVQLGEELLAQGNEEEGAEHLANAIVVCGQP 114 (143)
T ss_pred HHHHHHHHHhHHHHHHccCHHHHHHHHHHHHhhcCCH
Confidence 4556666789999999999999999999999999985
No 435
>KOG2997 consensus F-box protein FBX9 [General function prediction only]
Probab=21.37 E-value=1.2e+02 Score=33.17 Aligned_cols=39 Identities=18% Similarity=0.147 Sum_probs=35.2
Q ss_pred HHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 007571 383 IKQAAALVVKLEGNSLFSAGNISGAASKYSEALALCPMR 421 (598)
Q Consensus 383 e~~~~A~~lKeeGN~lfk~GdY~eAIe~YskALel~P~~ 421 (598)
...++|..+...|-..=+.|+.-+||..|..|+++.|+-
T Consensus 14 ~~~kkA~~l~~~av~~Eq~G~l~dai~fYR~AlqI~~di 52 (366)
T KOG2997|consen 14 PLAKKAIALYEKAVLKEQDGSLYDAINFYRDALQIVPDI 52 (366)
T ss_pred hHHHHHHHHHHHHHHHhhcCcHHHHHHHHHhhhcCCchH
Confidence 346789999999999999999999999999999998874
No 436
>cd02677 MIT_SNX15 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This MIT domain sub-family is found in sorting nexin 15 and related proteins. The molecular function of the MIT domain is unclear.
Probab=21.00 E-value=4.1e+02 Score=22.53 Aligned_cols=29 Identities=7% Similarity=-0.249 Sum_probs=20.0
Q ss_pred HHHHHHHHHhhcHHHHHHHHHHHHHHhcc
Q 007571 468 WRRAQAYDMLALAKESLLDAILFINECSQ 496 (598)
Q Consensus 468 yRRAqAy~~LGdy~EAl~d~~kALel~~k 496 (598)
..+|.-....|+|++|+..|..+++.+..
T Consensus 10 ~~~Ave~d~~~~y~eA~~~Y~~~i~~~~~ 38 (75)
T cd02677 10 IRLALEKEEEGDYEAAFEFYRAGVDLLLK 38 (75)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 33444444448888888888888887764
No 437
>TIGR01675 plant-AP plant acid phosphatase. This model explicitly excludes the VSPs which lack the nucleophilc aspartate. The possibility exists, however, that some members of this family may, while containing all of the conserved HAD-superfamily catalytic residues, lack activity and have a function related to the function of the VSPs rather than the acid phosphatases.
Probab=20.72 E-value=71 Score=32.92 Aligned_cols=45 Identities=27% Similarity=0.343 Sum_probs=34.1
Q ss_pred hhhhhhhhhhcccccHHHHHHH--HHhcCCchHHHHHhcccchhhHHHHHHHHhhcc
Q 007571 79 IPYYAAHIIGSYTMNMEEFAES--AVHAGVIPPLVELLRGRLTWVEQRVAVRALGHL 133 (598)
Q Consensus 79 ~~yy~ah~~gsy~~~~~~~~~~--av~~~~~~~l~~~~~~~~~wve~r~~~r~l~h~ 133 (598)
+|||+.|+.|.-..+.+.|.+= +-++-+||+-+++++ .++++||-
T Consensus 92 ~py~~~~~~g~~~~~~~~~~~wv~~~~apaip~al~l~~----------~l~~~G~~ 138 (229)
T TIGR01675 92 IPYYKKHGYGTEKTDPTAFWLWLGKGAAPALPEGLKLYQ----------KIIELGIK 138 (229)
T ss_pred HHHHHHhccCCCcCCHHHHHHHHHcCCCCCCHHHHHHHH----------HHHHCCCE
Confidence 6999999999877787777652 335667888888875 56777874
No 438
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=20.42 E-value=1.9e+02 Score=34.22 Aligned_cols=73 Identities=16% Similarity=0.122 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---------------chHHHHHHHHHHHH-HHHHcCCh
Q 007571 380 DLHIKQAAALVVKLEGNSLFSAGNISGAASKYSEALALCPMR---------------SKKERVVLYSNRAQ-CHLLMQQP 443 (598)
Q Consensus 380 Elee~~~~A~~lKeeGN~lfk~GdY~eAIe~YskALel~P~~---------------~~~~~a~ly~NRA~-cylKLgdy 443 (598)
++....+...++++.|+...+++++..|.+++.+|-.+..-- ...-...-.+|.|. ||++.|++
T Consensus 658 ~la~e~~s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d~~~LlLl~t~~g~~~~l~~la~~~~~~g~~N~AF~~~~l~g~~ 737 (794)
T KOG0276|consen 658 DLAVEANSEVKWRQLGDAALSAGELPLASECFLRARDLGSLLLLYTSSGNAEGLAVLASLAKKQGKNNLAFLAYFLSGDY 737 (794)
T ss_pred HHHHhhcchHHHHHHHHHHhhcccchhHHHHHHhhcchhhhhhhhhhcCChhHHHHHHHHHHhhcccchHHHHHHHcCCH
Q ss_pred HHHHHHHHH
Q 007571 444 LAAISDATR 452 (598)
Q Consensus 444 eeAI~D~~k 452 (598)
++|+.....
T Consensus 738 ~~C~~lLi~ 746 (794)
T KOG0276|consen 738 EECLELLIS 746 (794)
T ss_pred HHHHHHHHh
No 439
>PF01239 PPTA: Protein prenyltransferase alpha subunit repeat; InterPro: IPR002088 Protein prenylation is the posttranslational attachment of either a farnesyl group or a geranylgeranyl group via a thioether linkage (-C-S-C-) to a cysteine at or near the carboxyl terminus of the protein. Farnesyl and geranylgeranyl groups are polyisoprenes, unsaturated hydrocarbons with a multiple of five carbons; the chain is 15 carbons long in the farnesyl moiety and 20 carbons long in the geranylgeranyl moiety. There are three different protein prenyltransferases in humans: farnesyltransferase (FT) and geranylgeranyltransferase 1 (GGT1) share the same motif (the CaaX box) around the cysteine in their substrates, and are thus called CaaX prenyltransferases, whereas geranylgeranyltransferase 2 (GGT2, also called Rab geranylgeranyltransferase) recognises a different motif and is thus called a non-CaaX prenyltransferase. Protein prenyltransferases are currently known only in eukaryotes, but they are widespread, being found in vertebrates, insects, nematodes, plants, fungi and protozoa, including several parasites. Each protein consists of two subunits, alpha and beta; the alpha subunit of FT and GGT1 is encoded by the same gene, FNTA. The alpha subunit is thought to participate in a stable complex with the isoprenyl substrate; the beta subunit binds the peptide substrate. In the alpha subunits of both types of protein prenyltransferases, seven tetratricopeptide repeats are formed by pairs of helices that are stabilised by conserved intercalating residues. The alpha subunits of GGT2 in mammals and plants also have an immunoglobulin-like domain between the fifth and sixth tetratricopeptide repeat, as well as leucine-rich repeats at the carboxyl terminus. The functions of these additional domains in GGT2 are as yet undefined, but they are apparently not directly involved in the interaction with substrates and Rab escort proteins. The tetratricopeptide repeats of the alpha subunit form a right-handed superhelix, which embraces the (alpha-alpha)6 barrel of the beta subunit []. ; GO: 0008318 protein prenyltransferase activity, 0018342 protein prenylation; PDB: 1S63_A 1LD7_A 1LD8_A 2H6G_A 1SA4_A 1MZC_A 1TN6_A 2F0Y_A 2H6H_A 2H6F_A ....
Probab=20.05 E-value=2.9e+02 Score=18.83 Aligned_cols=29 Identities=14% Similarity=0.001 Sum_probs=23.5
Q ss_pred HHHHHHHHHHhCCCCCcCHHHHHHHHHHHHHh
Q 007571 446 AISDATRALCLHNPLNRHAKSLWRRAQAYDML 477 (598)
Q Consensus 446 AI~D~~kALeLdP~~~~~~KAyyRRAqAy~~L 477 (598)
.+..+.++|..+|. +.-++..|-.++..+
T Consensus 2 El~~~~~~l~~~pk---nys~W~yR~~ll~~l 30 (31)
T PF01239_consen 2 ELEFTKKALEKDPK---NYSAWNYRRWLLKQL 30 (31)
T ss_dssp HHHHHHHHHHHSTT---CHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCcc---cccHHHHHHHHHHHc
Confidence 46778899999999 998988887766554
Done!