BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 007573
         (597 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2V77|A Chain A, Crystal Structure Of Human Carboxypeptidase A1
 pdb|2V77|B Chain B, Crystal Structure Of Human Carboxypeptidase A1
          Length = 309

 Score = 29.6 bits (65), Expect = 4.6,   Method: Compositional matrix adjust.
 Identities = 12/32 (37%), Positives = 20/32 (62%)

Query: 557 LGGDMSHPCIDKIHLELKRASVQMKSVDDFVE 588
           L G  S+PC +  H +   + V++KS+ DFV+
Sbjct: 153 LSGASSNPCSETYHGKFANSEVEVKSIVDFVK 184


>pdb|3FJU|A Chain A, Ascaris Suum Carboxypeptidase Inhibitor In Complex With
           Human Carboxypeptidase A1
          Length = 307

 Score = 29.6 bits (65), Expect = 4.7,   Method: Compositional matrix adjust.
 Identities = 12/32 (37%), Positives = 20/32 (62%)

Query: 557 LGGDMSHPCIDKIHLELKRASVQMKSVDDFVE 588
           L G  S+PC +  H +   + V++KS+ DFV+
Sbjct: 152 LSGASSNPCSETYHGKFANSEVEVKSIVDFVK 183


>pdb|2HCM|A Chain A, Crystal Structure Of Mouse Putative Dual Specificity
           Phosphatase Complexed With Zinc Tungstate, New York
           Structural Genomics Consortium
          Length = 164

 Score = 28.9 bits (63), Expect = 8.4,   Method: Composition-based stats.
 Identities = 31/126 (24%), Positives = 49/126 (38%), Gaps = 20/126 (15%)

Query: 269 CVSFNAMIAGYAQNGVAEEALRLFSGMIKMDMQPDDATLVSVFTACSALQLLNEGRQSHV 328
           CV+ +    G    GVAE  + +F         P +  L  +   C+A++       S +
Sbjct: 41  CVNVSRQQPGPRAPGVAELRVPVFD-------DPAEDLLTHLEPTCAAMEAAVRDGGSCL 93

Query: 329 LVIRNGFEANVSVCNAVITMYSRCGGILDSELAF----RQIHSPNLVSWNTIIAAFAQHG 384
           +  +NG   + +VC A +  +   G  LD         R +  PNL  W       AQ  
Sbjct: 94  VYCKNGRSRSAAVCTAYLMRHR--GHSLDRAFQMVKSARPVAEPNLGFW-------AQLQ 144

Query: 385 HYEKAL 390
            YE+ L
Sbjct: 145 KYEQTL 150


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.324    0.136    0.414 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 17,204,276
Number of Sequences: 62578
Number of extensions: 673738
Number of successful extensions: 1853
Number of sequences better than 100.0: 3
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 1851
Number of HSP's gapped (non-prelim): 3
length of query: 597
length of database: 14,973,337
effective HSP length: 104
effective length of query: 493
effective length of database: 8,465,225
effective search space: 4173355925
effective search space used: 4173355925
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 54 (25.4 bits)