Query 007573
Match_columns 597
No_of_seqs 678 out of 3824
Neff 11.1
Searched_HMMs 46136
Date Thu Mar 28 12:27:05 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007573.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/007573hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03077 Protein ECB2; Provisi 100.0 5E-84 1.1E-88 704.3 61.3 541 47-589 219-773 (857)
2 PLN03081 pentatricopeptide (PP 100.0 1.5E-77 3.2E-82 638.3 58.4 511 79-589 85-610 (697)
3 PLN03077 Protein ECB2; Provisi 100.0 1.6E-70 3.5E-75 598.2 49.6 492 47-542 118-625 (857)
4 PLN03218 maturation of RBCL 1; 100.0 1.6E-63 3.5E-68 532.3 57.7 494 47-543 367-916 (1060)
5 PLN03218 maturation of RBCL 1; 100.0 2.4E-59 5.2E-64 500.3 50.7 504 79-594 368-923 (1060)
6 PLN03081 pentatricopeptide (PP 100.0 1.1E-55 2.4E-60 470.6 43.6 448 47-504 84-559 (697)
7 TIGR02917 PEP_TPR_lipo putativ 100.0 3.1E-32 6.7E-37 304.4 50.2 483 49-538 362-868 (899)
8 TIGR02917 PEP_TPR_lipo putativ 100.0 7.2E-32 1.6E-36 301.4 51.9 483 47-535 394-899 (899)
9 PRK11447 cellulose synthase su 100.0 7.1E-24 1.5E-28 237.6 52.3 480 47-535 59-699 (1157)
10 PRK11447 cellulose synthase su 99.9 6.2E-23 1.3E-27 230.1 50.0 406 119-535 276-739 (1157)
11 KOG4626 O-linked N-acetylgluco 99.9 1.4E-23 3E-28 199.6 32.4 434 84-525 51-508 (966)
12 PRK09782 bacteriophage N4 rece 99.9 1.5E-20 3.4E-25 201.3 50.2 478 47-537 75-707 (987)
13 KOG4626 O-linked N-acetylgluco 99.9 3.5E-22 7.7E-27 190.1 29.3 416 115-538 51-487 (966)
14 PRK09782 bacteriophage N4 rece 99.9 1E-19 2.3E-24 195.0 47.4 441 88-539 189-743 (987)
15 TIGR00990 3a0801s09 mitochondr 99.9 3.7E-20 8.1E-25 195.2 38.9 414 115-536 130-571 (615)
16 PRK11788 tetratricopeptide rep 99.9 1.4E-19 3.1E-24 181.3 29.9 301 212-543 42-354 (389)
17 PRK15174 Vi polysaccharide exp 99.9 3.2E-18 6.9E-23 179.8 39.1 324 177-506 45-385 (656)
18 PRK10049 pgaA outer membrane p 99.9 8.9E-18 1.9E-22 180.4 42.0 394 111-536 14-456 (765)
19 PRK10049 pgaA outer membrane p 99.9 1.6E-17 3.4E-22 178.5 43.1 387 84-510 18-464 (765)
20 TIGR00990 3a0801s09 mitochondr 99.9 4.2E-18 9.1E-23 179.6 37.9 251 251-508 307-577 (615)
21 PRK11788 tetratricopeptide rep 99.9 1.2E-18 2.5E-23 174.7 32.2 289 180-502 41-347 (389)
22 PRK15174 Vi polysaccharide exp 99.8 1E-17 2.3E-22 175.9 37.8 346 185-538 16-383 (656)
23 KOG2002 TPR-containing nuclear 99.8 3.4E-17 7.5E-22 164.6 36.3 473 62-537 176-746 (1018)
24 PRK14574 hmsH outer membrane p 99.8 2.7E-16 5.8E-21 165.6 44.1 418 90-509 43-520 (822)
25 KOG2002 TPR-containing nuclear 99.8 2E-17 4.3E-22 166.4 33.6 433 80-519 269-762 (1018)
26 PRK14574 hmsH outer membrane p 99.8 2.1E-16 4.5E-21 166.4 42.7 416 59-478 43-522 (822)
27 KOG2003 TPR repeat-containing 99.7 2.4E-15 5.2E-20 138.8 24.6 273 246-523 427-710 (840)
28 KOG1915 Cell cycle control pro 99.7 2.4E-13 5.2E-18 126.6 36.8 485 48-535 71-624 (677)
29 KOG0495 HAT repeat protein [RN 99.7 8.2E-13 1.8E-17 127.8 41.3 472 64-548 390-890 (913)
30 KOG2076 RNA polymerase III tra 99.7 1.6E-12 3.6E-17 130.7 40.5 307 59-366 148-510 (895)
31 KOG1915 Cell cycle control pro 99.7 1.9E-12 4.2E-17 120.7 35.8 447 81-535 73-584 (677)
32 PF13429 TPR_15: Tetratricopep 99.7 4.3E-16 9.4E-21 147.7 11.1 215 316-535 56-276 (280)
33 KOG0547 Translocase of outer m 99.7 3.7E-13 8E-18 125.9 28.9 214 316-535 338-565 (606)
34 KOG0495 HAT repeat protein [RN 99.6 7E-12 1.5E-16 121.5 38.3 452 54-515 410-893 (913)
35 KOG2076 RNA polymerase III tra 99.6 6.1E-13 1.3E-17 133.7 32.2 326 179-537 144-513 (895)
36 KOG2003 TPR repeat-containing 99.6 1.2E-13 2.5E-18 127.9 24.4 416 118-537 207-690 (840)
37 KOG1155 Anaphase-promoting com 99.6 6.5E-12 1.4E-16 117.0 34.4 359 203-588 162-528 (559)
38 PRK10747 putative protoheme IX 99.6 1.5E-12 3.3E-17 129.2 28.2 283 187-503 97-391 (398)
39 KOG2047 mRNA splicing factor [ 99.6 3E-10 6.5E-15 110.2 42.0 472 47-524 99-711 (835)
40 PRK10747 putative protoheme IX 99.6 1.2E-11 2.6E-16 122.8 32.7 214 314-535 163-389 (398)
41 TIGR00540 hemY_coli hemY prote 99.6 1.9E-11 4.2E-16 122.0 33.7 285 186-500 96-397 (409)
42 KOG1155 Anaphase-promoting com 99.6 4.9E-11 1.1E-15 111.3 33.0 354 172-534 162-534 (559)
43 KOG1126 DNA-binding cell divis 99.5 1.8E-12 3.9E-17 126.4 22.1 276 253-538 334-622 (638)
44 KOG1126 DNA-binding cell divis 99.5 1.1E-12 2.4E-17 127.8 20.6 279 190-508 335-626 (638)
45 KOG4422 Uncharacterized conser 99.5 1.4E-10 3E-15 107.2 32.7 223 80-334 206-463 (625)
46 PF13429 TPR_15: Tetratricopep 99.5 4.6E-14 9.9E-19 133.9 10.7 251 243-501 13-276 (280)
47 KOG4422 Uncharacterized conser 99.5 2.3E-10 5E-15 105.7 33.8 326 172-504 205-592 (625)
48 KOG1173 Anaphase-promoting com 99.5 3.7E-10 7.9E-15 108.3 35.1 472 52-535 18-517 (611)
49 TIGR00540 hemY_coli hemY prote 99.5 4E-11 8.6E-16 119.8 30.0 287 216-535 95-398 (409)
50 COG3071 HemY Uncharacterized e 99.5 4.2E-10 9.1E-15 103.7 30.3 290 178-501 86-389 (400)
51 TIGR02521 type_IV_pilW type IV 99.4 2.4E-11 5.3E-16 112.2 22.6 197 338-535 30-231 (234)
52 KOG1174 Anaphase-promoting com 99.4 1.3E-09 2.9E-14 100.4 32.3 270 234-509 228-507 (564)
53 KOG0547 Translocase of outer m 99.4 9.1E-10 2E-14 103.7 31.9 220 278-504 335-568 (606)
54 COG2956 Predicted N-acetylgluc 99.4 2.9E-10 6.3E-15 101.5 26.0 112 187-299 48-171 (389)
55 KOG1173 Anaphase-promoting com 99.4 1.4E-09 3E-14 104.4 31.7 462 48-519 47-535 (611)
56 COG2956 Predicted N-acetylgluc 99.4 3.9E-10 8.4E-15 100.7 26.0 280 218-501 48-346 (389)
57 KOG2376 Signal recognition par 99.4 2E-09 4.2E-14 103.9 31.2 450 57-533 19-517 (652)
58 KOG4318 Bicoid mRNA stability 99.4 2.2E-09 4.7E-14 108.2 31.9 461 47-540 22-598 (1088)
59 KOG2047 mRNA splicing factor [ 99.4 7.6E-08 1.7E-12 94.0 39.5 435 83-535 104-614 (835)
60 KOG4162 Predicted calmodulin-b 99.3 3.8E-09 8.3E-14 105.1 31.0 392 140-537 320-784 (799)
61 COG3071 HemY Uncharacterized e 99.3 2.6E-09 5.5E-14 98.6 25.9 276 251-534 97-388 (400)
62 PRK12370 invasion protein regu 99.3 1.3E-09 2.7E-14 113.3 26.2 260 268-537 255-536 (553)
63 KOG3785 Uncharacterized conser 99.3 4.4E-08 9.5E-13 88.8 29.8 435 57-506 29-494 (557)
64 KOG3785 Uncharacterized conser 99.3 6E-08 1.3E-12 87.9 30.6 449 49-522 58-536 (557)
65 KOG1840 Kinesin light chain [C 99.2 2E-09 4.4E-14 106.5 22.6 192 344-535 246-478 (508)
66 KOG1129 TPR repeat-containing 99.2 5.1E-10 1.1E-14 99.9 16.3 229 273-538 227-460 (478)
67 COG3063 PilF Tfp pilus assembl 99.2 1.3E-09 2.8E-14 93.0 17.7 162 372-538 37-204 (250)
68 PRK11189 lipoprotein NlpI; Pro 99.2 2.2E-09 4.8E-14 102.0 21.7 212 318-538 40-267 (296)
69 PRK12370 invasion protein regu 99.2 2.1E-09 4.6E-14 111.7 23.4 211 318-535 275-501 (553)
70 PF13041 PPR_2: PPR repeat fam 99.2 4.2E-11 9.1E-16 79.4 6.9 50 368-417 1-50 (50)
71 KOG3617 WD40 and TPR repeat-co 99.2 2.8E-07 6E-12 92.5 36.3 234 47-296 723-994 (1416)
72 TIGR02521 type_IV_pilW type IV 99.2 4.8E-09 1E-13 96.8 23.5 200 269-503 31-233 (234)
73 KOG1156 N-terminal acetyltrans 99.2 7.4E-08 1.6E-12 94.3 31.5 456 86-594 13-516 (700)
74 KOG3616 Selective LIM binding 99.2 1.1E-07 2.3E-12 94.1 32.3 440 55-532 620-1130(1636)
75 PF13041 PPR_2: PPR repeat fam 99.2 6.5E-11 1.4E-15 78.5 6.8 50 267-316 1-50 (50)
76 KOG1129 TPR repeat-containing 99.2 6.9E-10 1.5E-14 99.1 14.9 230 242-507 227-463 (478)
77 KOG1174 Anaphase-promoting com 99.2 3.2E-07 6.8E-12 85.1 31.7 408 142-584 96-522 (564)
78 PRK11189 lipoprotein NlpI; Pro 99.2 2E-08 4.4E-13 95.4 25.0 203 307-517 67-281 (296)
79 KOG0624 dsRNA-activated protei 99.2 6.1E-08 1.3E-12 87.5 25.4 308 178-508 42-376 (504)
80 KOG4318 Bicoid mRNA stability 99.1 4E-09 8.7E-14 106.3 18.9 271 290-596 11-282 (1088)
81 KOG3616 Selective LIM binding 99.1 5.8E-07 1.3E-11 89.2 33.1 424 64-536 545-1024(1636)
82 KOG4162 Predicted calmodulin-b 99.1 1.3E-07 2.8E-12 94.5 28.0 392 111-508 322-789 (799)
83 KOG1127 TPR repeat-containing 99.1 1.8E-07 3.9E-12 95.9 28.8 130 405-535 967-1103(1238)
84 KOG1156 N-terminal acetyltrans 99.1 1.4E-06 3.1E-11 85.6 33.4 409 51-468 9-466 (700)
85 KOG0548 Molecular co-chaperone 99.1 2.7E-07 5.9E-12 88.7 27.8 95 59-153 11-114 (539)
86 KOG1125 TPR repeat-containing 99.1 7.2E-09 1.6E-13 100.1 17.3 250 316-584 297-559 (579)
87 KOG1840 Kinesin light chain [C 99.1 3E-08 6.4E-13 98.3 21.5 232 239-501 200-478 (508)
88 PF12569 NARP1: NMDA receptor- 99.0 7.2E-08 1.6E-12 96.9 23.2 297 245-594 11-339 (517)
89 KOG2376 Signal recognition par 99.0 3.3E-06 7.1E-11 82.3 32.3 405 123-536 23-487 (652)
90 COG3063 PilF Tfp pilus assembl 99.0 2.1E-07 4.6E-12 79.8 21.0 188 316-507 47-241 (250)
91 PF04733 Coatomer_E: Coatomer 99.0 2.9E-08 6.3E-13 92.9 17.3 80 456-535 182-264 (290)
92 KOG3617 WD40 and TPR repeat-co 99.0 1E-06 2.2E-11 88.6 27.8 353 142-532 725-1170(1416)
93 KOG4340 Uncharacterized conser 99.0 1.7E-06 3.6E-11 76.9 25.8 401 115-535 13-442 (459)
94 PF04733 Coatomer_E: Coatomer 98.9 1.8E-07 4E-12 87.5 20.8 156 346-508 109-271 (290)
95 PF12569 NARP1: NMDA receptor- 98.9 1.5E-06 3.3E-11 87.5 28.2 298 212-534 11-332 (517)
96 KOG1127 TPR repeat-containing 98.9 9.6E-07 2.1E-11 90.7 26.6 450 66-534 474-994 (1238)
97 KOG0985 Vesicle coat protein c 98.9 1E-05 2.3E-10 83.4 33.7 230 142-394 983-1218(1666)
98 cd05804 StaR_like StaR_like; a 98.9 4.7E-06 1E-10 82.4 30.5 196 342-537 117-337 (355)
99 KOG0624 dsRNA-activated protei 98.9 3.6E-06 7.8E-11 76.4 25.8 285 145-468 40-368 (504)
100 KOG0548 Molecular co-chaperone 98.9 1.5E-06 3.2E-11 83.8 24.2 90 33-122 13-114 (539)
101 KOG0985 Vesicle coat protein c 98.8 0.00016 3.5E-09 75.0 38.6 239 267-531 982-1244(1666)
102 TIGR03302 OM_YfiO outer membra 98.8 5.7E-07 1.2E-11 83.0 20.1 181 339-537 33-233 (235)
103 PRK04841 transcriptional regul 98.8 1.4E-05 3E-10 89.7 34.7 357 181-537 348-761 (903)
104 PRK15359 type III secretion sy 98.8 4.6E-07 1E-11 75.7 15.6 94 444-537 27-122 (144)
105 PRK10370 formate-dependent nit 98.8 8.7E-07 1.9E-11 78.3 18.2 147 377-537 23-174 (198)
106 KOG1914 mRNA cleavage and poly 98.8 7E-05 1.5E-09 72.5 31.6 124 47-171 17-165 (656)
107 cd05804 StaR_like StaR_like; a 98.7 3.4E-05 7.4E-10 76.3 29.6 233 352-586 93-343 (355)
108 KOG1070 rRNA processing protei 98.7 2.9E-06 6.2E-11 90.4 21.7 198 336-538 1455-1665(1710)
109 PRK04841 transcriptional regul 98.7 5.8E-05 1.3E-09 84.7 33.7 355 150-506 348-764 (903)
110 KOG4340 Uncharacterized conser 98.7 7.8E-06 1.7E-10 72.8 20.4 286 208-532 13-335 (459)
111 PRK15363 pathogenicity island 98.7 2E-06 4.3E-11 70.5 15.5 118 441-581 35-154 (157)
112 PRK15359 type III secretion sy 98.6 1.1E-06 2.3E-11 73.5 14.1 123 391-519 14-138 (144)
113 COG5010 TadD Flp pilus assembl 98.6 3.7E-06 8.1E-11 73.9 17.6 155 374-531 70-226 (257)
114 COG5010 TadD Flp pilus assembl 98.6 4.4E-06 9.6E-11 73.5 17.7 134 402-537 63-198 (257)
115 PLN02789 farnesyltranstransfer 98.6 1.9E-05 4.1E-10 75.1 22.6 176 355-533 88-299 (320)
116 PRK15179 Vi polysaccharide bio 98.6 5.4E-06 1.2E-10 86.9 20.4 126 405-533 86-214 (694)
117 COG4783 Putative Zn-dependent 98.6 3.5E-05 7.6E-10 73.9 22.8 177 354-535 252-436 (484)
118 KOG1125 TPR repeat-containing 98.5 5.5E-06 1.2E-10 80.7 17.7 255 245-529 292-564 (579)
119 PRK10370 formate-dependent nit 98.5 9.1E-06 2E-10 71.9 17.5 154 346-510 23-181 (198)
120 KOG1128 Uncharacterized conser 98.5 5.7E-06 1.2E-10 82.7 17.3 209 311-537 405-617 (777)
121 KOG1914 mRNA cleavage and poly 98.5 0.0011 2.4E-08 64.6 31.3 121 79-200 18-163 (656)
122 KOG3060 Uncharacterized conser 98.5 4E-05 8.6E-10 67.0 19.5 167 342-511 55-229 (289)
123 KOG1070 rRNA processing protei 98.5 4.2E-05 9.2E-10 81.9 22.9 219 204-423 1457-1689(1710)
124 PF12854 PPR_1: PPR repeat 98.4 3.4E-07 7.4E-12 54.2 4.3 32 436-467 2-33 (34)
125 TIGR03302 OM_YfiO outer membra 98.4 2.1E-05 4.5E-10 72.5 18.2 180 303-504 32-234 (235)
126 TIGR02552 LcrH_SycD type III s 98.4 4.3E-06 9.3E-11 69.5 12.0 97 441-537 17-115 (135)
127 PLN02789 farnesyltranstransfer 98.4 4.7E-05 1E-09 72.4 20.3 186 349-537 47-251 (320)
128 KOG3081 Vesicle coat complex C 98.4 0.00034 7.3E-09 61.9 23.4 70 456-525 188-259 (299)
129 KOG1128 Uncharacterized conser 98.4 1.3E-05 2.8E-10 80.2 16.7 189 334-537 393-583 (777)
130 PF12854 PPR_1: PPR repeat 98.4 4.9E-07 1.1E-11 53.6 3.8 32 400-431 2-33 (34)
131 PRK15179 Vi polysaccharide bio 98.3 0.00013 2.8E-09 76.8 22.2 137 368-509 84-224 (694)
132 PRK14720 transcript cleavage f 98.3 0.0002 4.3E-09 76.2 23.1 148 341-518 118-268 (906)
133 TIGR02552 LcrH_SycD type III s 98.3 3E-05 6.4E-10 64.4 13.7 113 392-508 5-120 (135)
134 PF09295 ChAPs: ChAPs (Chs5p-A 98.2 2.6E-05 5.6E-10 75.7 13.9 122 408-534 172-295 (395)
135 KOG2053 Mitochondrial inherita 98.2 0.013 2.7E-07 61.0 33.5 401 124-540 21-506 (932)
136 PF09976 TPR_21: Tetratricopep 98.2 6.1E-05 1.3E-09 63.2 13.6 114 418-532 24-143 (145)
137 KOG3060 Uncharacterized conser 98.2 0.00029 6.3E-09 61.8 17.6 163 372-538 54-222 (289)
138 PRK14720 transcript cleavage f 98.1 0.00089 1.9E-08 71.4 23.6 146 207-381 118-268 (906)
139 COG4783 Putative Zn-dependent 98.1 0.00062 1.3E-08 65.6 20.3 133 351-502 318-454 (484)
140 cd00189 TPR Tetratricopeptide 98.1 3.6E-05 7.7E-10 59.1 10.0 93 444-536 3-97 (100)
141 KOG3081 Vesicle coat complex C 98.1 0.0013 2.9E-08 58.2 20.2 247 251-508 21-277 (299)
142 PF13414 TPR_11: TPR repeat; P 98.1 1.1E-05 2.3E-10 57.8 6.3 65 472-536 2-67 (69)
143 PF09976 TPR_21: Tetratricopep 98.1 0.00025 5.3E-09 59.5 15.4 125 373-500 15-145 (145)
144 TIGR02795 tol_pal_ybgF tol-pal 98.1 6.6E-05 1.4E-09 60.6 11.2 94 444-537 5-106 (119)
145 PF07079 DUF1347: Protein of u 98.1 0.013 2.9E-07 56.1 29.8 408 60-478 16-530 (549)
146 KOG0553 TPR repeat-containing 98.1 4.1E-05 8.9E-10 68.9 10.4 90 415-507 91-183 (304)
147 TIGR00756 PPR pentatricopeptid 98.0 9.3E-06 2E-10 48.9 4.6 35 371-405 1-35 (35)
148 PF09295 ChAPs: ChAPs (Chs5p-A 98.0 0.0002 4.4E-09 69.6 15.6 123 342-468 172-295 (395)
149 PLN03088 SGT1, suppressor of 98.0 0.00011 2.3E-09 71.8 13.7 98 414-513 11-110 (356)
150 TIGR00756 PPR pentatricopeptid 98.0 1E-05 2.3E-10 48.7 4.4 34 270-303 1-34 (35)
151 PRK15331 chaperone protein Sic 98.0 0.00018 4E-09 59.4 12.7 100 436-535 31-133 (165)
152 COG5107 RNA14 Pre-mRNA 3'-end 98.0 0.019 4.1E-07 55.0 28.4 80 47-126 39-123 (660)
153 PF12895 Apc3: Anaphase-promot 98.0 6E-06 1.3E-10 61.8 3.2 78 454-532 2-83 (84)
154 PF13812 PPR_3: Pentatricopept 98.0 1.5E-05 3.3E-10 47.6 4.3 33 270-302 2-34 (34)
155 PF13432 TPR_16: Tetratricopep 98.0 2.3E-05 5.1E-10 55.2 5.9 59 479-537 3-61 (65)
156 TIGR02795 tol_pal_ybgF tol-pal 97.9 0.00017 3.7E-09 58.2 11.8 103 408-510 5-113 (119)
157 PF13812 PPR_3: Pentatricopept 97.9 2.1E-05 4.6E-10 46.9 4.5 33 371-403 2-34 (34)
158 KOG0553 TPR repeat-containing 97.9 0.00012 2.6E-09 66.0 10.7 99 378-480 89-189 (304)
159 KOG2041 WD40 repeat protein [G 97.9 0.036 7.7E-07 56.1 28.3 204 97-326 679-900 (1189)
160 PRK10153 DNA-binding transcrip 97.9 0.00071 1.5E-08 69.0 17.4 140 367-508 334-488 (517)
161 KOG0550 Molecular chaperone (D 97.9 0.002 4.4E-08 60.7 18.0 156 378-537 177-351 (486)
162 COG4235 Cytochrome c biogenesi 97.8 0.00023 4.9E-09 64.7 11.4 101 438-538 153-258 (287)
163 PRK02603 photosystem I assembl 97.8 0.00023 5.1E-09 61.7 11.1 82 441-522 35-121 (172)
164 PLN03088 SGT1, suppressor of 97.8 0.00042 9E-09 67.7 13.5 103 376-482 8-112 (356)
165 CHL00033 ycf3 photosystem I as 97.7 0.00032 6.9E-09 60.6 10.5 94 441-534 35-140 (168)
166 PRK02603 photosystem I assembl 97.7 0.0013 2.8E-08 57.1 14.2 129 370-522 35-166 (172)
167 cd00189 TPR Tetratricopeptide 97.7 0.00041 9E-09 53.0 10.1 90 413-504 8-99 (100)
168 PF14559 TPR_19: Tetratricopep 97.7 5.3E-05 1.1E-09 54.0 4.3 54 484-537 2-55 (68)
169 PF13371 TPR_9: Tetratricopept 97.7 0.00016 3.6E-09 52.3 6.8 59 480-538 2-60 (73)
170 PF13432 TPR_16: Tetratricopep 97.7 9.5E-05 2.1E-09 52.1 5.1 61 447-507 3-65 (65)
171 PF05843 Suf: Suppressor of fo 97.6 0.0021 4.5E-08 60.5 15.0 134 371-507 2-141 (280)
172 PF01535 PPR: PPR repeat; Int 97.6 8.3E-05 1.8E-09 43.2 3.4 31 270-300 1-31 (31)
173 PF01535 PPR: PPR repeat; Int 97.6 9.6E-05 2.1E-09 42.9 3.5 31 371-401 1-31 (31)
174 KOG2041 WD40 repeat protein [G 97.6 0.11 2.5E-06 52.6 28.2 57 204-267 851-907 (1189)
175 PRK10153 DNA-binding transcrip 97.6 0.0031 6.6E-08 64.5 16.3 135 400-538 332-484 (517)
176 PF14938 SNAP: Soluble NSF att 97.5 0.014 3E-07 55.3 19.5 141 377-532 101-262 (282)
177 PF05843 Suf: Suppressor of fo 97.5 0.00087 1.9E-08 63.1 11.3 129 406-536 2-136 (280)
178 PF12895 Apc3: Anaphase-promot 97.5 0.00033 7.2E-09 52.3 6.7 80 419-498 3-83 (84)
179 PRK10803 tol-pal system protei 97.5 0.00084 1.8E-08 61.9 10.6 95 443-537 145-247 (263)
180 CHL00033 ycf3 photosystem I as 97.5 0.0022 4.8E-08 55.4 12.6 61 372-432 37-99 (168)
181 PF13414 TPR_11: TPR repeat; P 97.5 0.00029 6.2E-09 50.3 5.8 65 440-504 2-69 (69)
182 COG4700 Uncharacterized protei 97.5 0.019 4.2E-07 48.1 16.7 133 401-535 85-221 (251)
183 PF14938 SNAP: Soluble NSF att 97.5 0.049 1.1E-06 51.5 22.0 108 372-480 157-275 (282)
184 PF04840 Vps16_C: Vps16, C-ter 97.5 0.11 2.4E-06 49.6 24.8 104 242-361 181-284 (319)
185 COG4700 Uncharacterized protei 97.5 0.0043 9.3E-08 51.9 12.6 110 429-538 77-191 (251)
186 PF13431 TPR_17: Tetratricopep 97.4 9.8E-05 2.1E-09 43.6 2.2 33 496-528 2-34 (34)
187 KOG1130 Predicted G-alpha GTPa 97.4 0.0015 3.2E-08 61.4 10.8 130 406-535 196-343 (639)
188 PRK10866 outer membrane biogen 97.4 0.028 6.1E-07 51.5 18.7 172 346-534 39-239 (243)
189 KOG2053 Mitochondrial inherita 97.4 0.25 5.4E-06 51.9 39.9 108 62-170 21-141 (932)
190 PF14559 TPR_19: Tetratricopep 97.4 0.00023 4.9E-09 50.7 4.0 50 417-468 3-52 (68)
191 PF12688 TPR_5: Tetratrico pep 97.4 0.0018 4E-08 51.4 9.4 88 447-534 7-102 (120)
192 PF08579 RPM2: Mitochondrial r 97.4 0.0035 7.5E-08 47.9 10.1 81 271-351 27-116 (120)
193 PRK15363 pathogenicity island 97.3 0.0072 1.6E-07 49.9 12.4 93 343-436 39-134 (157)
194 PLN03098 LPA1 LOW PSII ACCUMUL 97.3 0.0014 3.1E-08 63.4 9.0 65 472-536 74-141 (453)
195 PF12688 TPR_5: Tetratrico pep 97.3 0.01 2.3E-07 47.1 12.4 91 376-466 7-100 (120)
196 KOG0550 Molecular chaperone (D 97.2 0.045 9.8E-07 52.0 18.0 87 417-504 261-352 (486)
197 PF08579 RPM2: Mitochondrial r 97.2 0.0058 1.3E-07 46.7 10.0 80 373-453 28-116 (120)
198 PF10037 MRP-S27: Mitochondria 97.2 0.0042 9.2E-08 60.8 11.7 115 299-413 61-181 (429)
199 KOG2796 Uncharacterized conser 97.2 0.041 8.9E-07 48.9 16.2 134 372-506 179-319 (366)
200 PF13428 TPR_14: Tetratricopep 97.2 0.00082 1.8E-08 42.7 4.4 42 474-515 2-43 (44)
201 COG5107 RNA14 Pre-mRNA 3'-end 97.2 0.26 5.7E-06 47.6 28.9 87 70-156 29-122 (660)
202 KOG0543 FKBP-type peptidyl-pro 97.2 0.0037 8.1E-08 59.2 10.3 87 473-585 257-343 (397)
203 PF04840 Vps16_C: Vps16, C-ter 97.1 0.27 5.8E-06 47.0 30.2 104 346-466 184-287 (319)
204 PF13371 TPR_9: Tetratricopept 97.1 0.0018 3.8E-08 46.8 6.4 64 448-511 2-67 (73)
205 PF06239 ECSIT: Evolutionarily 97.1 0.014 3E-07 50.7 12.3 105 301-420 44-153 (228)
206 KOG2280 Vacuolar assembly/sort 97.1 0.48 1E-05 48.9 28.5 82 117-198 442-531 (829)
207 KOG2796 Uncharacterized conser 97.0 0.033 7.2E-07 49.5 14.3 131 407-538 179-317 (366)
208 PF13281 DUF4071: Domain of un 97.0 0.072 1.6E-06 51.3 18.0 159 344-505 146-337 (374)
209 KOG1538 Uncharacterized conser 97.0 0.06 1.3E-06 54.0 17.3 180 271-472 600-805 (1081)
210 PRK10803 tol-pal system protei 97.0 0.012 2.5E-07 54.5 11.9 102 407-508 145-252 (263)
211 PF13424 TPR_12: Tetratricopep 97.0 0.0026 5.7E-08 46.6 6.2 62 474-535 6-74 (78)
212 COG3898 Uncharacterized membra 97.0 0.36 7.8E-06 45.8 26.6 272 251-535 97-391 (531)
213 KOG2280 Vacuolar assembly/sort 97.0 0.6 1.3E-05 48.2 26.3 321 178-530 441-793 (829)
214 PF07079 DUF1347: Protein of u 96.9 0.42 9.2E-06 46.3 29.9 62 472-534 459-522 (549)
215 PF10037 MRP-S27: Mitochondria 96.9 0.028 6.1E-07 55.3 14.5 117 267-383 64-186 (429)
216 PRK10866 outer membrane biogen 96.9 0.28 6.1E-06 45.0 20.3 50 414-463 184-234 (243)
217 PF13525 YfiO: Outer membrane 96.8 0.077 1.7E-06 47.3 15.4 161 348-527 14-198 (203)
218 PF06239 ECSIT: Evolutionarily 96.8 0.018 3.9E-07 50.0 10.6 96 360-456 35-153 (228)
219 PRK11619 lytic murein transgly 96.8 0.95 2.1E-05 48.0 33.0 114 420-533 256-372 (644)
220 PF03704 BTAD: Bacterial trans 96.8 0.023 5.1E-07 47.6 11.4 62 474-535 63-124 (146)
221 COG4235 Cytochrome c biogenesi 96.7 0.084 1.8E-06 48.4 14.7 105 402-508 153-262 (287)
222 KOG0543 FKBP-type peptidyl-pro 96.6 0.03 6.4E-07 53.3 11.5 95 442-536 258-355 (397)
223 PRK11906 transcriptional regul 96.6 0.43 9.3E-06 46.9 19.4 144 386-532 274-432 (458)
224 KOG1130 Predicted G-alpha GTPa 96.6 0.0039 8.4E-08 58.7 5.4 46 58-103 25-77 (639)
225 KOG4555 TPR repeat-containing 96.5 0.021 4.7E-07 44.7 8.4 90 449-538 51-146 (175)
226 PF13512 TPR_18: Tetratricopep 96.5 0.077 1.7E-06 43.1 11.7 88 449-536 18-128 (142)
227 PF09205 DUF1955: Domain of un 96.5 0.32 7E-06 38.5 14.3 141 380-539 12-152 (161)
228 PF13424 TPR_12: Tetratricopep 96.4 0.0039 8.5E-08 45.6 3.9 61 442-502 6-75 (78)
229 KOG1258 mRNA processing protei 96.4 1.3 2.7E-05 44.9 27.4 182 338-522 296-490 (577)
230 COG1729 Uncharacterized protei 96.4 0.021 4.5E-07 51.6 8.9 83 453-537 153-245 (262)
231 COG3898 Uncharacterized membra 96.4 0.92 2E-05 43.2 26.7 281 177-467 85-389 (531)
232 KOG1538 Uncharacterized conser 96.4 0.23 5E-06 50.1 16.6 89 202-297 744-845 (1081)
233 PF13525 YfiO: Outer membrane 96.4 0.35 7.5E-06 43.1 16.7 142 374-536 9-170 (203)
234 PF10300 DUF3808: Protein of u 96.3 0.36 7.8E-06 49.2 18.2 186 373-579 191-401 (468)
235 PRK11906 transcriptional regul 96.2 0.095 2.1E-06 51.3 12.9 119 420-538 273-403 (458)
236 COG4105 ComL DNA uptake lipopr 96.2 0.89 1.9E-05 41.0 18.6 58 479-536 173-233 (254)
237 PF12921 ATP13: Mitochondrial 96.1 0.093 2E-06 42.2 10.3 97 339-451 2-98 (126)
238 KOG2066 Vacuolar assembly/sort 96.0 2.4 5.1E-05 44.4 26.2 96 122-217 366-467 (846)
239 PLN03098 LPA1 LOW PSII ACCUMUL 96.0 0.048 1E-06 53.2 9.8 62 441-502 75-141 (453)
240 PF02259 FAT: FAT domain; Int 96.0 1.6 3.6E-05 42.8 21.3 150 368-520 144-305 (352)
241 KOG4234 TPR repeat-containing 95.9 0.094 2E-06 44.7 9.6 90 449-538 103-199 (271)
242 KOG2610 Uncharacterized conser 95.9 0.22 4.8E-06 46.1 12.6 111 353-467 117-235 (491)
243 COG0457 NrfG FOG: TPR repeat [ 95.9 1.3 2.8E-05 40.0 27.2 197 339-537 59-266 (291)
244 COG4785 NlpI Lipoprotein NlpI, 95.8 0.53 1.1E-05 40.9 13.9 164 367-538 96-268 (297)
245 COG3118 Thioredoxin domain-con 95.8 0.88 1.9E-05 41.8 15.9 50 381-431 145-194 (304)
246 PRK09687 putative lyase; Provi 95.7 1.8 4E-05 40.6 24.5 136 172-313 140-276 (280)
247 PF00515 TPR_1: Tetratricopept 95.7 0.024 5.1E-07 33.4 4.1 32 474-505 2-33 (34)
248 PF03704 BTAD: Bacterial trans 95.7 0.13 2.7E-06 43.1 10.1 71 373-444 65-139 (146)
249 PF04184 ST7: ST7 protein; In 95.7 1.6 3.4E-05 43.3 18.2 97 411-507 265-380 (539)
250 COG3118 Thioredoxin domain-con 95.6 0.69 1.5E-05 42.5 14.7 122 413-537 142-266 (304)
251 PF07719 TPR_2: Tetratricopept 95.6 0.038 8.3E-07 32.4 4.8 33 474-506 2-34 (34)
252 PF04053 Coatomer_WDAD: Coatom 95.6 0.34 7.4E-06 48.6 14.0 48 246-295 326-373 (443)
253 KOG1585 Protein required for f 95.5 1.5 3.3E-05 39.0 15.8 86 444-530 153-250 (308)
254 KOG2066 Vacuolar assembly/sort 95.5 3.8 8.3E-05 42.9 24.2 150 55-205 361-536 (846)
255 PF10300 DUF3808: Protein of u 95.5 3.3 7.2E-05 42.3 20.9 155 176-331 190-374 (468)
256 PF13281 DUF4071: Domain of un 95.4 2 4.4E-05 41.6 18.0 163 374-537 145-335 (374)
257 COG1729 Uncharacterized protei 95.3 0.18 4E-06 45.6 10.0 96 372-468 144-242 (262)
258 KOG1258 mRNA processing protei 95.2 4 8.7E-05 41.5 25.0 366 48-415 43-485 (577)
259 PRK09687 putative lyase; Provi 95.2 2.8 6.1E-05 39.4 25.9 21 411-432 241-261 (280)
260 PRK15331 chaperone protein Sic 95.2 0.48 1E-05 39.6 11.3 86 380-468 47-132 (165)
261 KOG0890 Protein kinase of the 95.1 5.1 0.00011 47.6 22.5 312 210-538 1388-1733(2382)
262 COG0457 NrfG FOG: TPR repeat [ 95.1 2.4 5.3E-05 38.2 25.6 163 339-505 95-268 (291)
263 KOG1585 Protein required for f 95.1 1.8 4E-05 38.5 14.8 54 373-427 193-249 (308)
264 PF13512 TPR_18: Tetratricopep 94.9 0.72 1.6E-05 37.6 11.4 115 377-507 17-133 (142)
265 KOG1920 IkappaB kinase complex 94.9 7.1 0.00015 43.1 21.7 25 84-108 793-819 (1265)
266 PF04053 Coatomer_WDAD: Coatom 94.8 0.51 1.1E-05 47.4 12.7 132 371-532 296-427 (443)
267 KOG1941 Acetylcholine receptor 94.7 3.9 8.6E-05 38.7 17.3 92 271-362 85-185 (518)
268 PF09205 DUF1955: Domain of un 94.7 1.8 3.9E-05 34.5 13.6 65 371-437 87-151 (161)
269 KOG2610 Uncharacterized conser 94.7 0.35 7.7E-06 44.9 10.0 160 382-544 115-284 (491)
270 KOG3941 Intermediate in Toll s 94.6 0.39 8.4E-06 43.5 10.0 106 358-464 53-182 (406)
271 PF12921 ATP13: Mitochondrial 94.6 0.27 5.9E-06 39.6 8.3 61 406-466 3-77 (126)
272 KOG1941 Acetylcholine receptor 94.4 0.56 1.2E-05 44.1 10.8 53 481-533 214-272 (518)
273 KOG4555 TPR repeat-containing 94.3 0.31 6.8E-06 38.5 7.7 90 414-505 52-147 (175)
274 smart00299 CLH Clathrin heavy 93.9 2.9 6.4E-05 34.5 13.7 123 53-185 10-136 (140)
275 smart00299 CLH Clathrin heavy 93.9 3.1 6.7E-05 34.3 14.7 124 374-517 11-135 (140)
276 PF13176 TPR_7: Tetratricopept 93.9 0.12 2.6E-06 30.8 3.9 26 509-534 1-26 (36)
277 PF10345 Cohesin_load: Cohesin 93.8 11 0.00024 40.2 25.6 49 486-534 547-604 (608)
278 PF13176 TPR_7: Tetratricopept 93.5 0.14 3.1E-06 30.5 3.7 28 475-502 1-28 (36)
279 PRK13800 putative oxidoreducta 93.4 16 0.00035 41.0 25.8 254 70-332 624-880 (897)
280 PF13181 TPR_8: Tetratricopept 93.4 0.18 3.8E-06 29.5 4.0 31 475-505 3-33 (34)
281 PRK11619 lytic murein transgly 93.1 14 0.0003 39.5 39.6 453 53-541 37-510 (644)
282 PF13428 TPR_14: Tetratricopep 92.7 0.24 5.2E-06 31.2 4.0 31 507-537 1-31 (44)
283 KOG3941 Intermediate in Toll s 92.7 1.3 2.8E-05 40.3 9.7 97 258-354 54-173 (406)
284 PF09613 HrpB1_HrpK: Bacterial 92.6 1.5 3.2E-05 36.6 9.4 96 407-505 9-109 (160)
285 KOG4648 Uncharacterized conser 92.5 0.29 6.3E-06 45.5 5.7 95 411-508 103-200 (536)
286 COG3629 DnrI DNA-binding trans 92.2 0.91 2E-05 42.0 8.5 60 442-501 154-215 (280)
287 PF02259 FAT: FAT domain; Int 92.1 8.5 0.00018 37.7 16.3 66 472-537 145-214 (352)
288 PF09613 HrpB1_HrpK: Bacterial 92.0 1.3 2.8E-05 37.0 8.4 83 442-524 8-95 (160)
289 PF04184 ST7: ST7 protein; In 91.8 5.8 0.00013 39.6 13.8 59 477-535 263-323 (539)
290 COG4785 NlpI Lipoprotein NlpI, 91.6 9 0.00019 33.7 13.6 161 338-506 98-270 (297)
291 TIGR02561 HrpB1_HrpK type III 91.5 1.4 3E-05 36.1 7.8 72 453-524 22-95 (153)
292 KOG1920 IkappaB kinase complex 91.4 28 0.0006 38.9 25.3 141 341-499 910-1052(1265)
293 COG4105 ComL DNA uptake lipopr 91.3 11 0.00024 34.2 18.6 69 246-314 42-116 (254)
294 COG2976 Uncharacterized protei 91.1 9.5 0.00021 33.0 13.2 89 211-299 95-189 (207)
295 PF07035 Mic1: Colon cancer-as 90.9 5.1 0.00011 34.0 11.0 33 391-423 15-47 (167)
296 PF08631 SPO22: Meiosis protei 90.7 15 0.00033 34.6 23.4 18 483-500 256-273 (278)
297 PF10602 RPN7: 26S proteasome 90.5 7.7 0.00017 33.6 12.3 95 372-468 38-140 (177)
298 TIGR02561 HrpB1_HrpK type III 90.4 2.3 5E-05 34.9 8.1 78 406-485 8-89 (153)
299 KOG1464 COP9 signalosome, subu 90.2 9.2 0.0002 34.7 12.4 170 155-324 39-251 (440)
300 COG2976 Uncharacterized protei 90.2 11 0.00025 32.5 13.5 90 412-506 96-192 (207)
301 PF07719 TPR_2: Tetratricopept 90.2 0.46 1E-05 27.6 3.3 30 508-537 2-31 (34)
302 COG3629 DnrI DNA-binding trans 90.1 2.3 5E-05 39.4 9.1 74 341-414 155-236 (280)
303 PRK10941 hypothetical protein; 90.0 3.5 7.6E-05 38.3 10.3 63 475-537 183-245 (269)
304 PF13170 DUF4003: Protein of u 89.9 18 0.00039 34.3 17.6 135 285-450 78-226 (297)
305 COG3947 Response regulator con 89.8 16 0.00036 33.7 14.2 59 477-535 283-341 (361)
306 KOG2114 Vacuolar assembly/sort 89.8 32 0.00069 36.9 20.8 176 241-431 337-516 (933)
307 KOG2114 Vacuolar assembly/sort 89.7 32 0.00069 36.9 28.5 176 83-267 336-519 (933)
308 TIGR02270 conserved hypothetic 89.7 24 0.00051 35.3 22.6 128 131-262 88-215 (410)
309 PF10602 RPN7: 26S proteasome 89.6 2.4 5.2E-05 36.6 8.4 93 441-533 36-139 (177)
310 PF13374 TPR_10: Tetratricopep 89.4 0.97 2.1E-05 27.7 4.5 26 475-500 4-29 (42)
311 KOG1464 COP9 signalosome, subu 89.3 17 0.00037 33.1 18.1 237 252-494 41-324 (440)
312 PF00515 TPR_1: Tetratricopept 89.2 0.62 1.4E-05 27.1 3.3 30 508-537 2-31 (34)
313 KOG4648 Uncharacterized conser 89.2 1.2 2.6E-05 41.6 6.4 94 377-474 104-199 (536)
314 COG4649 Uncharacterized protei 89.1 13 0.00028 31.5 11.7 127 176-303 61-201 (221)
315 PF13174 TPR_6: Tetratricopept 89.0 0.9 2E-05 26.1 3.9 25 511-535 4-28 (33)
316 PRK15180 Vi polysaccharide bio 89.0 7.1 0.00015 38.5 11.7 88 450-537 332-421 (831)
317 PF07721 TPR_4: Tetratricopept 88.6 0.66 1.4E-05 25.2 2.8 24 508-531 2-25 (26)
318 KOG3364 Membrane protein invol 88.3 7 0.00015 31.4 9.2 71 438-508 29-106 (149)
319 PF13374 TPR_10: Tetratricopep 88.1 1 2.2E-05 27.6 3.9 29 508-536 3-31 (42)
320 PF06552 TOM20_plant: Plant sp 88.0 1.2 2.7E-05 37.7 5.3 33 489-521 51-83 (186)
321 PF13174 TPR_6: Tetratricopept 88.0 0.76 1.6E-05 26.4 3.1 31 476-506 3-33 (33)
322 PRK13800 putative oxidoreducta 87.9 52 0.0011 37.1 28.0 180 133-321 625-806 (897)
323 PF14853 Fis1_TPR_C: Fis1 C-te 87.7 3.6 7.8E-05 27.1 6.3 49 510-584 4-52 (53)
324 KOG4234 TPR repeat-containing 87.6 7.5 0.00016 33.7 9.6 101 416-516 106-211 (271)
325 KOG4570 Uncharacterized conser 87.0 6.7 0.00014 36.5 9.6 101 333-434 58-164 (418)
326 COG2909 MalT ATP-dependent tra 86.9 50 0.0011 35.8 19.3 185 350-538 426-649 (894)
327 smart00028 TPR Tetratricopepti 86.8 1.4 3E-05 24.5 3.8 29 476-504 4-32 (34)
328 KOG0276 Vesicle coat complex C 86.0 10 0.00022 38.7 11.0 124 187-334 599-722 (794)
329 cd00923 Cyt_c_Oxidase_Va Cytoc 85.8 5.7 0.00012 29.7 7.0 61 386-448 23-83 (103)
330 KOG4642 Chaperone-dependent E3 85.5 3.3 7.2E-05 36.8 6.7 51 483-533 54-104 (284)
331 PF13181 TPR_8: Tetratricopept 85.4 2 4.3E-05 24.8 4.0 29 508-536 2-30 (34)
332 KOG0276 Vesicle coat complex C 85.0 15 0.00033 37.6 11.7 124 155-298 598-721 (794)
333 PF14853 Fis1_TPR_C: Fis1 C-te 84.9 2.7 5.9E-05 27.7 4.6 32 478-509 6-37 (53)
334 PF11207 DUF2989: Protein of u 84.9 6.2 0.00013 34.4 8.0 76 451-527 117-198 (203)
335 KOG0890 Protein kinase of the 84.8 1.1E+02 0.0023 37.6 24.5 144 179-328 1388-1542(2382)
336 PF06552 TOM20_plant: Plant sp 84.2 12 0.00025 32.0 9.1 63 469-538 64-138 (186)
337 PF02284 COX5A: Cytochrome c o 84.1 7 0.00015 29.6 6.9 60 388-449 28-87 (108)
338 PF09986 DUF2225: Uncharacteri 83.9 5.8 0.00013 35.5 7.9 63 475-537 120-195 (214)
339 PF13431 TPR_17: Tetratricopep 83.3 1.8 3.9E-05 25.4 3.0 24 336-359 10-33 (34)
340 TIGR02270 conserved hypothetic 83.1 53 0.0012 32.9 22.9 232 57-296 45-279 (410)
341 PF00637 Clathrin: Region in C 82.4 1 2.2E-05 37.4 2.4 25 143-167 42-66 (143)
342 PF14561 TPR_20: Tetratricopep 82.2 4.4 9.6E-05 30.3 5.5 41 495-535 10-50 (90)
343 PRK12798 chemotaxis protein; R 81.9 56 0.0012 32.3 25.5 205 352-583 125-347 (421)
344 TIGR03504 FimV_Cterm FimV C-te 81.9 3 6.5E-05 26.2 3.7 27 511-537 3-29 (44)
345 KOG1308 Hsp70-interacting prot 81.9 0.93 2E-05 42.5 2.1 86 454-539 127-214 (377)
346 PF14432 DYW_deaminase: DYW fa 81.6 1.3 2.7E-05 35.2 2.5 27 543-573 2-28 (116)
347 PF07721 TPR_4: Tetratricopept 81.2 3.1 6.6E-05 22.5 3.2 20 446-465 6-25 (26)
348 COG2909 MalT ATP-dependent tra 80.9 90 0.002 34.0 24.2 215 315-532 426-684 (894)
349 KOG4279 Serine/threonine prote 80.8 13 0.00028 39.0 9.6 187 270-506 202-399 (1226)
350 KOG1586 Protein required for f 80.8 42 0.00091 30.1 15.1 58 449-506 162-228 (288)
351 COG4649 Uncharacterized protei 80.2 36 0.00078 29.0 15.9 129 371-501 60-195 (221)
352 KOG1586 Protein required for f 80.1 45 0.00097 30.0 16.1 90 446-535 118-223 (288)
353 COG1747 Uncharacterized N-term 80.0 72 0.0016 32.3 22.3 143 369-518 98-250 (711)
354 KOG4507 Uncharacterized conser 79.6 5.7 0.00012 40.2 6.6 100 416-518 618-721 (886)
355 PF13934 ELYS: Nuclear pore co 78.5 52 0.0011 29.8 13.0 101 84-186 79-184 (226)
356 KOG0376 Serine-threonine phosp 78.4 4 8.7E-05 40.3 5.2 85 450-534 13-99 (476)
357 KOG0545 Aryl-hydrocarbon recep 77.9 21 0.00045 32.2 8.8 89 448-536 185-293 (329)
358 COG1747 Uncharacterized N-term 77.7 85 0.0018 31.8 19.6 93 268-365 65-157 (711)
359 KOG2396 HAT (Half-A-TPR) repea 77.6 85 0.0018 31.8 30.0 241 286-535 299-558 (568)
360 PRK15180 Vi polysaccharide bio 77.2 21 0.00046 35.4 9.5 100 380-482 333-434 (831)
361 KOG2396 HAT (Half-A-TPR) repea 77.1 87 0.0019 31.7 25.2 101 402-505 456-563 (568)
362 KOG1550 Extracellular protein 76.9 1E+02 0.0023 32.5 22.9 79 456-537 454-539 (552)
363 PF11207 DUF2989: Protein of u 76.7 27 0.00058 30.6 9.1 73 387-460 123-197 (203)
364 PF10579 Rapsyn_N: Rapsyn N-te 76.5 5.7 0.00012 28.5 4.2 45 485-529 18-65 (80)
365 PF00637 Clathrin: Region in C 75.8 1.2 2.5E-05 37.1 0.7 82 311-395 14-95 (143)
366 TIGR02508 type_III_yscG type I 75.5 33 0.00072 26.0 9.3 61 346-409 46-106 (115)
367 KOG3807 Predicted membrane pro 75.0 37 0.0008 32.0 10.0 20 491-510 380-399 (556)
368 PF02284 COX5A: Cytochrome c o 75.0 27 0.00059 26.6 7.5 46 469-514 41-86 (108)
369 COG4455 ImpE Protein of avirul 74.6 13 0.00028 32.8 6.6 72 444-515 4-80 (273)
370 smart00028 TPR Tetratricopepti 74.5 6.1 0.00013 21.6 3.6 29 508-536 2-30 (34)
371 TIGR02508 type_III_yscG type I 73.7 37 0.00081 25.8 9.7 60 245-307 46-105 (115)
372 KOG1550 Extracellular protein 73.2 1.3E+02 0.0028 31.8 17.0 82 456-538 343-428 (552)
373 PF04097 Nic96: Nup93/Nic96; 73.0 1.4E+02 0.003 32.0 20.2 40 148-187 116-158 (613)
374 PF07035 Mic1: Colon cancer-as 72.9 59 0.0013 27.7 14.8 37 172-208 27-63 (167)
375 PF04097 Nic96: Nup93/Nic96; 72.8 1.4E+02 0.003 32.0 18.8 18 211-228 117-134 (613)
376 cd00923 Cyt_c_Oxidase_Va Cytoc 72.6 31 0.00067 26.0 7.2 47 285-331 23-69 (103)
377 PF10579 Rapsyn_N: Rapsyn N-te 72.2 10 0.00022 27.3 4.5 47 417-463 18-65 (80)
378 KOG4507 Uncharacterized conser 72.0 32 0.00069 35.3 9.4 134 402-538 568-707 (886)
379 smart00386 HAT HAT (Half-A-TPR 71.7 9 0.0002 21.5 3.8 30 487-516 1-30 (33)
380 COG4455 ImpE Protein of avirul 71.0 77 0.0017 28.2 12.4 123 373-506 4-138 (273)
381 PF07163 Pex26: Pex26 protein; 70.9 52 0.0011 30.4 9.8 89 377-466 90-183 (309)
382 PF13934 ELYS: Nuclear pore co 70.2 71 0.0015 28.9 10.8 103 53-157 79-186 (226)
383 PRK10941 hypothetical protein; 70.1 23 0.00049 33.0 7.7 66 444-509 184-251 (269)
384 KOG2063 Vacuolar assembly/sort 70.1 1.8E+02 0.004 32.2 23.8 27 271-297 506-532 (877)
385 PF10345 Cohesin_load: Cohesin 69.2 1.7E+02 0.0036 31.4 23.8 48 484-531 372-428 (608)
386 KOG0551 Hsp90 co-chaperone CNS 69.0 27 0.00058 33.1 7.7 92 443-534 83-180 (390)
387 PF08631 SPO22: Meiosis protei 68.8 1E+02 0.0023 28.9 24.1 61 372-434 86-150 (278)
388 TIGR03504 FimV_Cterm FimV C-te 68.7 13 0.00027 23.4 4.0 25 275-299 5-29 (44)
389 COG4976 Predicted methyltransf 68.3 7.7 0.00017 34.4 4.0 57 450-506 4-62 (287)
390 PF12862 Apc5: Anaphase-promot 66.5 23 0.00049 26.7 5.9 53 483-535 8-69 (94)
391 COG0790 FOG: TPR repeat, SEL1 65.6 1.2E+02 0.0027 28.6 18.6 146 385-537 92-267 (292)
392 PF07720 TPR_3: Tetratricopept 65.2 27 0.00058 20.8 4.7 30 476-505 4-35 (36)
393 PF09670 Cas_Cas02710: CRISPR- 65.2 1.4E+02 0.0031 29.6 12.7 54 379-433 140-197 (379)
394 PF11846 DUF3366: Domain of un 64.0 29 0.00062 30.5 7.0 35 470-504 141-175 (193)
395 KOG3364 Membrane protein invol 63.5 36 0.00077 27.6 6.4 65 402-468 29-98 (149)
396 PF04190 DUF410: Protein of un 63.5 1.3E+02 0.0028 28.0 14.2 158 352-536 3-170 (260)
397 PF13762 MNE1: Mitochondrial s 63.1 86 0.0019 25.9 9.7 50 369-418 78-128 (145)
398 PF07163 Pex26: Pex26 protein; 63.0 98 0.0021 28.8 9.9 20 276-295 90-109 (309)
399 PF13170 DUF4003: Protein of u 63.0 1.4E+02 0.0031 28.4 18.0 147 386-534 78-244 (297)
400 KOG4077 Cytochrome c oxidase, 62.3 58 0.0013 26.0 7.2 59 388-448 67-125 (149)
401 PF04090 RNA_pol_I_TF: RNA pol 61.0 66 0.0014 28.3 8.3 90 474-563 42-132 (199)
402 KOG4521 Nuclear pore complex, 60.3 3E+02 0.0066 31.3 15.0 121 407-529 985-1124(1480)
403 PF08311 Mad3_BUB1_I: Mad3/BUB 60.1 83 0.0018 25.4 8.4 42 491-532 81-124 (126)
404 PF11846 DUF3366: Domain of un 59.9 40 0.00086 29.6 7.2 53 416-468 119-171 (193)
405 cd08819 CARD_MDA5_2 Caspase ac 59.4 36 0.00079 25.1 5.4 31 188-219 50-80 (88)
406 COG3947 Response regulator con 59.3 1.6E+02 0.0034 27.7 12.3 48 276-324 286-333 (361)
407 KOG4567 GTPase-activating prot 58.8 1.4E+02 0.0031 28.2 10.2 73 390-468 263-345 (370)
408 cd08819 CARD_MDA5_2 Caspase ac 58.6 33 0.00071 25.3 5.1 60 133-193 23-85 (88)
409 COG4976 Predicted methyltransf 58.1 21 0.00046 31.8 4.8 56 483-538 5-60 (287)
410 PF14561 TPR_20: Tetratricopep 56.4 82 0.0018 23.5 8.0 53 472-524 21-75 (90)
411 cd00280 TRFH Telomeric Repeat 54.9 92 0.002 26.9 7.8 29 480-509 118-146 (200)
412 KOG0686 COP9 signalosome, subu 54.4 2.3E+02 0.0049 28.0 14.0 58 240-297 152-215 (466)
413 KOG3824 Huntingtin interacting 54.1 25 0.00054 32.8 4.8 63 451-513 126-190 (472)
414 PF09477 Type_III_YscG: Bacter 53.8 1E+02 0.0022 23.9 9.2 85 320-408 22-106 (116)
415 PF14863 Alkyl_sulf_dimr: Alky 53.8 65 0.0014 26.6 6.8 63 458-523 58-120 (141)
416 PF06957 COPI_C: Coatomer (COP 53.1 57 0.0012 32.5 7.4 109 380-506 214-333 (422)
417 KOG0292 Vesicle coat complex C 52.9 22 0.00047 38.2 4.7 46 452-500 654-699 (1202)
418 KOG1498 26S proteasome regulat 52.7 2.4E+02 0.0051 27.8 16.2 114 445-558 135-263 (439)
419 COG5159 RPN6 26S proteasome re 52.2 2E+02 0.0044 26.8 12.3 199 275-501 9-234 (421)
420 PF10366 Vps39_1: Vacuolar sor 51.4 1.1E+02 0.0025 23.7 8.7 27 271-297 41-67 (108)
421 COG4941 Predicted RNA polymera 51.1 2.3E+02 0.005 27.2 11.7 120 385-508 271-400 (415)
422 PF11848 DUF3368: Domain of un 50.3 66 0.0014 20.6 5.3 34 380-413 12-45 (48)
423 PF10255 Paf67: RNA polymerase 50.0 70 0.0015 31.8 7.5 23 446-468 127-149 (404)
424 PRK09169 hypothetical protein; 48.7 6.4E+02 0.014 31.6 38.2 423 111-533 161-692 (2316)
425 PF12862 Apc5: Anaphase-promot 48.5 1.1E+02 0.0023 23.0 7.0 54 381-434 9-70 (94)
426 cd00280 TRFH Telomeric Repeat 48.4 94 0.002 26.8 6.9 62 421-482 85-152 (200)
427 PF11768 DUF3312: Protein of u 47.7 2.8E+02 0.0061 28.7 11.3 24 343-366 412-435 (545)
428 PF10255 Paf67: RNA polymerase 47.6 90 0.002 31.0 7.8 57 83-139 77-149 (404)
429 PF10366 Vps39_1: Vacuolar sor 47.3 1.4E+02 0.0029 23.4 7.7 27 372-398 41-67 (108)
430 PRK10564 maltose regulon perip 47.1 39 0.00084 31.7 5.0 41 271-311 259-299 (303)
431 COG2912 Uncharacterized conser 46.5 80 0.0017 29.2 6.8 59 478-536 186-244 (269)
432 PF12069 DUF3549: Protein of u 46.5 2.8E+02 0.0061 26.8 12.1 90 242-334 170-260 (340)
433 PF08424 NRDE-2: NRDE-2, neces 46.3 2.8E+02 0.0061 26.8 15.5 116 386-504 47-185 (321)
434 KOG0991 Replication factor C, 45.9 2.3E+02 0.0051 25.7 12.5 132 271-411 132-279 (333)
435 PF08424 NRDE-2: NRDE-2, neces 45.4 2.9E+02 0.0063 26.7 13.6 109 471-594 63-178 (321)
436 KOG4570 Uncharacterized conser 44.6 1.6E+02 0.0035 27.9 8.4 104 362-468 56-162 (418)
437 PRK10564 maltose regulon perip 43.7 49 0.0011 31.0 5.1 40 372-411 259-298 (303)
438 PF11838 ERAP1_C: ERAP1-like C 42.7 3.1E+02 0.0068 26.2 21.7 84 420-503 145-231 (324)
439 KOG3824 Huntingtin interacting 42.3 37 0.0008 31.7 4.0 55 415-472 126-182 (472)
440 KOG1308 Hsp70-interacting prot 42.1 27 0.00058 33.2 3.2 114 417-533 126-241 (377)
441 PF08311 Mad3_BUB1_I: Mad3/BUB 41.9 1.8E+02 0.004 23.4 8.8 42 388-429 81-123 (126)
442 KOG2581 26S proteasome regulat 41.7 3.6E+02 0.0079 26.7 12.1 91 414-505 178-279 (493)
443 PHA02537 M terminase endonucle 41.4 1.8E+02 0.0039 26.4 8.1 22 485-506 190-211 (230)
444 KOG4642 Chaperone-dependent E3 41.0 2.8E+02 0.006 25.3 8.9 80 217-296 22-105 (284)
445 PF13929 mRNA_stabil: mRNA sta 39.7 3.3E+02 0.0072 25.7 21.1 110 284-393 143-261 (292)
446 PF04190 DUF410: Protein of un 39.5 3.2E+02 0.0069 25.4 17.0 83 337-434 88-170 (260)
447 PF14689 SPOB_a: Sensor_kinase 39.4 57 0.0012 22.3 3.7 26 373-398 26-51 (62)
448 PF10516 SHNi-TPR: SHNi-TPR; 39.0 79 0.0017 19.1 3.8 28 508-535 2-29 (38)
449 KOG2300 Uncharacterized conser 38.8 4.4E+02 0.0096 26.9 30.8 144 255-398 299-473 (629)
450 PRK13184 pknD serine/threonine 38.8 6.3E+02 0.014 28.7 20.0 345 51-395 476-896 (932)
451 PF12968 DUF3856: Domain of Un 38.3 2E+02 0.0044 22.9 9.5 56 478-533 60-126 (144)
452 PF11817 Foie-gras_1: Foie gra 38.3 1E+02 0.0022 28.4 6.4 22 446-467 183-204 (247)
453 KOG4814 Uncharacterized conser 38.3 3.4E+02 0.0073 28.7 10.2 86 453-538 366-459 (872)
454 PF15469 Sec5: Exocyst complex 38.0 2.7E+02 0.0058 24.1 10.5 24 411-434 92-115 (182)
455 KOG4077 Cytochrome c oxidase, 37.4 1.8E+02 0.0038 23.4 6.4 36 469-504 80-115 (149)
456 KOG2659 LisH motif-containing 37.4 3.1E+02 0.0068 24.7 9.2 15 452-466 114-128 (228)
457 cd08326 CARD_CASP9 Caspase act 37.2 87 0.0019 23.1 4.6 34 186-219 42-75 (84)
458 PF09477 Type_III_YscG: Bacter 36.6 2E+02 0.0044 22.3 8.7 79 219-299 20-99 (116)
459 PRK13342 recombination factor 36.5 4.6E+02 0.01 26.4 18.2 45 373-417 230-277 (413)
460 PF14689 SPOB_a: Sensor_kinase 36.2 79 0.0017 21.6 4.1 26 408-433 26-51 (62)
461 COG5191 Uncharacterized conser 36.1 65 0.0014 30.3 4.6 76 439-514 105-183 (435)
462 KOG0376 Serine-threonine phosp 35.8 75 0.0016 31.9 5.3 102 377-483 11-115 (476)
463 KOG0403 Neoplastic transformat 35.5 4.8E+02 0.01 26.3 17.9 26 85-110 218-243 (645)
464 PF11848 DUF3368: Domain of un 35.0 1.2E+02 0.0027 19.3 5.2 34 279-312 12-45 (48)
465 PF04762 IKI3: IKI3 family; I 34.9 7.4E+02 0.016 28.3 15.5 23 86-108 699-721 (928)
466 KOG0292 Vesicle coat complex C 34.0 5E+02 0.011 28.8 10.9 130 348-501 652-781 (1202)
467 PF11123 DNA_Packaging_2: DNA 33.8 75 0.0016 22.4 3.5 29 128-156 13-44 (82)
468 smart00777 Mad3_BUB1_I Mad3/BU 33.6 2.5E+02 0.0055 22.6 8.3 40 492-531 82-123 (125)
469 PF11663 Toxin_YhaV: Toxin wit 33.3 49 0.0011 26.8 3.0 32 381-414 106-137 (140)
470 KOG2581 26S proteasome regulat 33.0 5E+02 0.011 25.8 10.1 90 449-538 177-278 (493)
471 KOG2034 Vacuolar sorting prote 32.9 7.2E+02 0.016 27.6 27.2 51 120-170 366-416 (911)
472 cd08326 CARD_CASP9 Caspase act 32.8 1.5E+02 0.0032 21.9 5.2 40 249-288 41-80 (84)
473 PRK14700 recombination factor 32.6 4.4E+02 0.0096 25.0 9.8 99 266-364 120-226 (300)
474 KOG2300 Uncharacterized conser 32.4 5.6E+02 0.012 26.2 32.2 154 379-534 332-512 (629)
475 COG0735 Fur Fe2+/Zn2+ uptake r 31.9 2.1E+02 0.0046 23.7 6.7 44 376-419 26-69 (145)
476 PF11817 Foie-gras_1: Foie gra 31.4 1.7E+02 0.0037 27.0 6.7 24 410-433 183-206 (247)
477 PRK09169 hypothetical protein; 31.2 1.2E+03 0.025 29.5 39.9 473 50-522 122-723 (2316)
478 PF09670 Cas_Cas02710: CRISPR- 31.1 5.4E+02 0.012 25.6 11.9 54 278-332 140-197 (379)
479 PF02847 MA3: MA3 domain; Int 30.9 2E+02 0.0043 22.3 6.3 21 275-295 8-28 (113)
480 PF12968 DUF3856: Domain of Un 30.9 1.8E+02 0.0039 23.2 5.5 24 111-134 54-77 (144)
481 PRK11639 zinc uptake transcrip 30.5 1.8E+02 0.004 24.8 6.3 37 419-456 39-75 (169)
482 PF12069 DUF3549: Protein of u 30.2 5.2E+02 0.011 25.1 12.6 24 403-426 228-251 (340)
483 PF09454 Vps23_core: Vps23 cor 29.9 1.3E+02 0.0028 20.9 4.2 48 368-416 6-53 (65)
484 KOG0687 26S proteasome regulat 29.0 5.3E+02 0.011 24.8 12.6 22 444-465 107-128 (393)
485 PF10475 DUF2450: Protein of u 28.6 3.6E+02 0.0079 25.6 8.6 52 244-297 104-155 (291)
486 cd08323 CARD_APAF1 Caspase act 28.1 2.5E+02 0.0054 20.8 5.7 56 166-221 20-75 (86)
487 COG5187 RPN7 26S proteasome re 28.0 4.5E+02 0.0098 24.8 8.4 115 422-537 55-185 (412)
488 PF04910 Tcf25: Transcriptiona 27.3 6.1E+02 0.013 25.0 17.6 52 413-467 111-165 (360)
489 TIGR02710 CRISPR-associated pr 27.1 6.3E+02 0.014 25.1 11.5 26 379-404 139-164 (380)
490 COG4259 Uncharacterized protei 26.5 2.4E+02 0.0053 21.5 5.3 45 488-532 52-97 (121)
491 KOG2422 Uncharacterized conser 26.2 7.8E+02 0.017 25.9 14.1 15 507-521 483-497 (665)
492 PRK13341 recombination factor 26.2 9.1E+02 0.02 26.6 16.8 107 299-419 192-307 (725)
493 KOG4279 Serine/threonine prote 26.1 1.5E+02 0.0033 31.6 5.7 24 511-534 348-371 (1226)
494 cd02680 MIT_calpain7_2 MIT: do 25.6 1.2E+02 0.0026 21.8 3.6 15 487-501 20-34 (75)
495 cd07153 Fur_like Ferric uptake 24.9 1.5E+02 0.0034 23.1 4.7 45 376-420 6-50 (116)
496 COG5290 IkappaB kinase complex 24.7 9.6E+02 0.021 26.4 21.8 27 82-108 777-805 (1243)
497 PF00244 14-3-3: 14-3-3 protei 24.4 5.5E+02 0.012 23.5 16.5 193 375-585 6-230 (236)
498 COG5108 RPO41 Mitochondrial DN 24.4 5.5E+02 0.012 27.4 9.1 69 210-278 33-112 (1117)
499 cd08332 CARD_CASP2 Caspase act 24.2 2.4E+02 0.0053 21.0 5.2 30 188-217 48-77 (90)
500 PF13646 HEAT_2: HEAT repeats; 24.2 2.8E+02 0.006 20.0 6.4 85 132-216 2-88 (88)
No 1
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=5e-84 Score=704.29 Aligned_cols=541 Identities=33% Similarity=0.559 Sum_probs=529.0
Q ss_pred CCCcchHHHHHHHHHhcCChHHHHHHHhhcCCCCcchHHHHHHHHHhCCChhHHHHHHhhCC----CCCcchHHHHHHHH
Q 007573 47 TQYVFVNNAKISALSRAGKISAARQLFDQMTTKDVITWNAIITGYWQNGFLQESKNLFQSMP----VKNIVSWNCMIAGC 122 (597)
Q Consensus 47 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~----~~~~~~~~~ll~~~ 122 (597)
.||+.++|+||.+|+++|++++|.++|++|+.||+.+||+||.+|++.|++++|+++|++|. .||..||+.++.+|
T Consensus 219 ~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~Pd~~ty~~ll~a~ 298 (857)
T PLN03077 219 ELDVDVVNALITMYVKCGDVVSARLVFDRMPRRDCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVISAC 298 (857)
T ss_pred CcccchHhHHHHHHhcCCCHHHHHHHHhcCCCCCcchhHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHH
Confidence 78999999999999999999999999999999999999999999999999999999999996 46999999999999
Q ss_pred HcCCChHHHHHHHccCC----CCChhhHHHHHHHHHcCCChHHHHHHHccCCCCCchhHHHHHHHHHhCCChhHHHHHHH
Q 007573 123 IDNDRIDDAFDYFQAMP----ERNTATYNAMISGFLKHGRLEEATRLFEQMPRRNVISYTAMLDGFMKKGEVDKARALSD 198 (597)
Q Consensus 123 ~~~~~~~~A~~~~~~~~----~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 198 (597)
++.|+.+.|.+++..+. .||..+|++|+.+|+++|++++|.++|++|.+||.++|+.+|.+|++.|++++|+++|+
T Consensus 299 ~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~~s~n~li~~~~~~g~~~~A~~lf~ 378 (857)
T PLN03077 299 ELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMETKDAVSWTAMISGYEKNGLPDKALETYA 378 (857)
T ss_pred HhcCChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCCCCCeeeHHHHHHHHHhCCCHHHHHHHHH
Confidence 99999999999999987 78999999999999999999999999999999999999999999999999999999999
Q ss_pred hc----ccCCcchHHHHHHHHHcCCChHHHHHHHhhcCC--CCCCchHHHHHHHHHHhcCCHHHHHHHHhhcCCCChhHH
Q 007573 199 YM----SFKNVVSWTVMITGYVKNERFCEARELFYRMPD--YDKNVFVVTAMITGFCKVGMLENARLLFERIQPKDCVSF 272 (597)
Q Consensus 199 ~m----~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 272 (597)
+| ..||..||+.++.+|++.|++++|.++++.+.+ ..|+..++++|+++|+++|++++|.++|++|.++|+.+|
T Consensus 379 ~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~vs~ 458 (857)
T PLN03077 379 LMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPEKDVISW 458 (857)
T ss_pred HHHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCCCCCeeeH
Confidence 99 569999999999999999999999999999977 668999999999999999999999999999999999999
Q ss_pred HHHHHHHHHcCChhHHHHHHHHhHHCCCCCCHHHHHHHHHHHhccchhHHHHHHHHHHHHhCCCCcccHHHHHHHHHHhc
Q 007573 273 NAMIAGYAQNGVAEEALRLFSGMIKMDMQPDDATLVSVFTACSALQLLNEGRQSHVLVIRNGFEANVSVCNAVITMYSRC 352 (597)
Q Consensus 273 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 352 (597)
|.+|.+|++.|+.++|+.+|++|.. +++||..||..++.+|++.|.++.+.+++..+.+.|+.++..++|+|+++|+++
T Consensus 459 ~~mi~~~~~~g~~~eA~~lf~~m~~-~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~ 537 (857)
T PLN03077 459 TSIIAGLRLNNRCFEALIFFRQMLL-TLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRC 537 (857)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHh-CCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCccceechHHHHHHHHc
Confidence 9999999999999999999999986 699999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHhccCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHhccCcHHHHHHHHHHhH
Q 007573 353 GGILDSELAFRQIHSPNLVSWNTIIAAFAQHGHYEKALIFFSQMGLNGFDPDGITFLSLLSACGHAGKVNESMDLFELMV 432 (597)
Q Consensus 353 g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~ 432 (597)
|++++|.++|+.+ .+|..+||+||.+|+++|+.++|+++|++|.+.|+.||..||+.++.+|++.|++++|.++|+.|.
T Consensus 538 G~~~~A~~~f~~~-~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M~ 616 (857)
T PLN03077 538 GRMNYAWNQFNSH-EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSME 616 (857)
T ss_pred CCHHHHHHHHHhc-CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhhcChHHHHHHHHHHHH
Confidence 9999999999999 999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHH
Q 007573 433 KVYGIIPSSEHYTCLVDILSRAGQLEKAWQITQGMPFEADTGVWGSLLAACVINLNVELGELAAKKMRELDPQNSAVYVM 512 (597)
Q Consensus 433 ~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~ 512 (597)
+.+|+.|+..+|++++++|++.|++++|.+++++|+.+||..+|++|+.+|..+|+.+.++...+++++++|+++..|..
T Consensus 617 ~~~gi~P~~~~y~~lv~~l~r~G~~~eA~~~~~~m~~~pd~~~~~aLl~ac~~~~~~e~~e~~a~~l~~l~p~~~~~y~l 696 (857)
T PLN03077 617 EKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKMPITPDPAVWGALLNACRIHRHVELGELAAQHIFELDPNSVGYYIL 696 (857)
T ss_pred HHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCcchHHH
Confidence 77799999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCcHHHHHHHHHHHhCCCccCCCeeEEEECCEEEEEEeCCCCCcchHHHHHHHHHHHHHHhhcCCccch
Q 007573 513 LSNLYAAAGMWRDVTRVRLLMKEQGVTKQCAYSWIEIGNKVHYFLGGDMSHPCIDKIHLELKRASVQMKSVDDFVEI 589 (597)
Q Consensus 513 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~~~~ 589 (597)
++++|...|+|++|.++++.|+++|++|+||+|||++.+++|.|.+||++||+..+|+..|+.+..++++.|+++++
T Consensus 697 l~n~ya~~g~~~~a~~vr~~M~~~g~~k~~g~s~ie~~~~~~~f~~~d~~h~~~~~i~~~l~~l~~~~~~~g~~~~~ 773 (857)
T PLN03077 697 LCNLYADAGKWDEVARVRKTMRENGLTVDPGCSWVEVKGKVHAFLTDDESHPQIKEINTVLEGFYEKMKASGLAGSE 773 (857)
T ss_pred HHHHHHHCCChHHHHHHHHHHHHcCCCCCCCccEEEECCEEEEEecCCCCCcchHHHHHHHHHHHHHHHhCCcCCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999998764
No 2
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=1.5e-77 Score=638.27 Aligned_cols=511 Identities=30% Similarity=0.508 Sum_probs=497.3
Q ss_pred CCcchHHHHHHHHHhCCChhHHHHHHhhCCC-----CCcchHHHHHHHHHcCCChHHHHHHHccCC----CCChhhHHHH
Q 007573 79 KDVITWNAIITGYWQNGFLQESKNLFQSMPV-----KNIVSWNCMIAGCIDNDRIDDAFDYFQAMP----ERNTATYNAM 149 (597)
Q Consensus 79 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-----~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~----~~~~~~~~~l 149 (597)
++..+|+.+|.+|.+.|++++|+++|+.|.. +|..+|+.++.+|++.++++.|.+++..|. .||..+|+.|
T Consensus 85 ~~~~~~~~~i~~l~~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~L 164 (697)
T PLN03081 85 KSGVSLCSQIEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNRV 164 (697)
T ss_pred CCceeHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHHHH
Confidence 5677999999999999999999999999963 488999999999999999999999999987 6899999999
Q ss_pred HHHHHcCCChHHHHHHHccCCCCCchhHHHHHHHHHhCCChhHHHHHHHhc----ccCCcchHHHHHHHHHcCCChHHHH
Q 007573 150 ISGFLKHGRLEEATRLFEQMPRRNVISYTAMLDGFMKKGEVDKARALSDYM----SFKNVVSWTVMITGYVKNERFCEAR 225 (597)
Q Consensus 150 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m----~~~~~~~~~~ll~~~~~~g~~~~a~ 225 (597)
+.+|++.|++++|.++|++|.+||.++|+.++.+|++.|++++|+++|++| ..||..+|+.++.+|+..|..+.+.
T Consensus 165 i~~y~k~g~~~~A~~lf~~m~~~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~~~ 244 (697)
T PLN03081 165 LLMHVKCGMLIDARRLFDEMPERNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQ 244 (697)
T ss_pred HHHHhcCCCHHHHHHHHhcCCCCCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHHHHH
Confidence 999999999999999999999999999999999999999999999999999 5688999999999999999999999
Q ss_pred HHHhhcCC--CCCCchHHHHHHHHHHhcCCHHHHHHHHhhcCCCChhHHHHHHHHHHHcCChhHHHHHHHHhHHCCCCCC
Q 007573 226 ELFYRMPD--YDKNVFVVTAMITGFCKVGMLENARLLFERIQPKDCVSFNAMIAGYAQNGVAEEALRLFSGMIKMDMQPD 303 (597)
Q Consensus 226 ~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~ 303 (597)
+++..+.+ ..||..++++|+++|+++|++++|.++|++|.++|+++||.||.+|++.|++++|+++|++|.+.|+.||
T Consensus 245 ~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd 324 (697)
T PLN03081 245 QLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPEKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSID 324 (697)
T ss_pred HHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCCCCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCC
Confidence 99998876 6789999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhccchhHHHHHHHHHHHHhCCCCcccHHHHHHHHHHhcCCHHHHHHHHhccCCCChhhHHHHHHHHHHc
Q 007573 304 DATLVSVFTACSALQLLNEGRQSHVLVIRNGFEANVSVCNAVITMYSRCGGILDSELAFRQIHSPNLVSWNTIIAAFAQH 383 (597)
Q Consensus 304 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~ 383 (597)
..||+.++.+|++.|+++.|.+++..+.+.|++++..++++|+++|+++|++++|.++|++|.++|..+||+||.+|+++
T Consensus 325 ~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~~d~~t~n~lI~~y~~~ 404 (697)
T PLN03081 325 QFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPRKNLISWNALIAGYGNH 404 (697)
T ss_pred HHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCCCCeeeHHHHHHHHHHc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHH
Q 007573 384 GHYEKALIFFSQMGLNGFDPDGITFLSLLSACGHAGKVNESMDLFELMVKVYGIIPSSEHYTCLVDILSRAGQLEKAWQI 463 (597)
Q Consensus 384 g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~ 463 (597)
|+.++|+++|++|.+.|+.||..||+.++.+|.+.|.+++|.++|+.|.+.+|+.|+..+|++++++|++.|++++|.++
T Consensus 405 G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA~~~ 484 (697)
T PLN03081 405 GRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYAM 484 (697)
T ss_pred CCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHHHHHHH
Confidence 99999999999999999999999999999999999999999999999998889999999999999999999999999999
Q ss_pred HhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCcHHHHHHHHHHHhCCCccCCC
Q 007573 464 TQGMPFEADTGVWGSLLAACVINLNVELGELAAKKMRELDPQNSAVYVMLSNLYAAAGMWRDVTRVRLLMKEQGVTKQCA 543 (597)
Q Consensus 464 ~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 543 (597)
+++|+..|+..+|++|+.+|..+|+++.|..+++++++++|++..+|..++++|.+.|+|++|.++++.|+++|+++.||
T Consensus 485 ~~~~~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~~p~~~~~y~~L~~~y~~~G~~~~A~~v~~~m~~~g~~k~~g 564 (697)
T PLN03081 485 IRRAPFKPTVNMWAALLTACRIHKNLELGRLAAEKLYGMGPEKLNNYVVLLNLYNSSGRQAEAAKVVETLKRKGLSMHPA 564 (697)
T ss_pred HHHCCCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHhCCCCCCCcchHHHHHHHHhCCCHHHHHHHHHHHHHcCCccCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeEEEECCEEEEEEeCCCCCcchHHHHHHHHHHHHHHhhcCCccch
Q 007573 544 YSWIEIGNKVHYFLGGDMSHPCIDKIHLELKRASVQMKSVDDFVEI 589 (597)
Q Consensus 544 ~s~~~~~~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~~~~ 589 (597)
+||+++.+.+|.|.+||.+||+..+++..|.++..++++.|.++.+
T Consensus 565 ~s~i~~~~~~~~f~~~d~~h~~~~~i~~~l~~l~~~~~~~gy~~~~ 610 (697)
T PLN03081 565 CTWIEVKKQDHSFFSGDRLHPQSREIYQKLDELMKEISEYGYVAEE 610 (697)
T ss_pred eeEEEECCeEEEEccCCCCCccHHHHHHHHHHHHHHHHHcCCCCCc
Confidence 9999999999999999999999999999999999999999988764
No 3
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=1.6e-70 Score=598.23 Aligned_cols=492 Identities=27% Similarity=0.450 Sum_probs=474.1
Q ss_pred CCCcchHHHHHHHHHhcCChHHHHHHHhhcCCCCcchHHHHHHHHHhCCChhHHHHHHhhCC----CCCcchHHHHHHHH
Q 007573 47 TQYVFVNNAKISALSRAGKISAARQLFDQMTTKDVITWNAIITGYWQNGFLQESKNLFQSMP----VKNIVSWNCMIAGC 122 (597)
Q Consensus 47 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~----~~~~~~~~~ll~~~ 122 (597)
.+++.++|+|+++|++.|+++.|+++|++|++||+.+||.+|.+|++.|++++|+++|++|. .||..||+.++++|
T Consensus 118 ~~~~~~~n~li~~~~~~g~~~~A~~~f~~m~~~d~~~~n~li~~~~~~g~~~~A~~~f~~M~~~g~~Pd~~t~~~ll~~~ 197 (857)
T PLN03077 118 SLGVRLGNAMLSMFVRFGELVHAWYVFGKMPERDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTC 197 (857)
T ss_pred CCCchHHHHHHHHHHhCCChHHHHHHHhcCCCCCeeEHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHh
Confidence 68889999999999999999999999999999999999999999999999999999999996 57999999999999
Q ss_pred HcCCChHHHHHHHccCC----CCChhhHHHHHHHHHcCCChHHHHHHHccCCCCCchhHHHHHHHHHhCCChhHHHHHHH
Q 007573 123 IDNDRIDDAFDYFQAMP----ERNTATYNAMISGFLKHGRLEEATRLFEQMPRRNVISYTAMLDGFMKKGEVDKARALSD 198 (597)
Q Consensus 123 ~~~~~~~~A~~~~~~~~----~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 198 (597)
+..+++..+.+++..+. .+|+.++++|+.+|+++|++++|.++|++|+++|.++||++|.+|++.|++++|+++|+
T Consensus 198 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~~d~~s~n~li~~~~~~g~~~eAl~lf~ 277 (857)
T PLN03077 198 GGIPDLARGREVHAHVVRFGFELDVDVVNALITMYVKCGDVVSARLVFDRMPRRDCISWNAMISGYFENGECLEGLELFF 277 (857)
T ss_pred CCccchhhHHHHHHHHHHcCCCcccchHhHHHHHHhcCCCHHHHHHHHhcCCCCCcchhHHHHHHHHhCCCHHHHHHHHH
Confidence 99999999999998887 78999999999999999999999999999999999999999999999999999999999
Q ss_pred hc----ccCCcchHHHHHHHHHcCCChHHHHHHHhhcCC--CCCCchHHHHHHHHHHhcCCHHHHHHHHhhcCCCChhHH
Q 007573 199 YM----SFKNVVSWTVMITGYVKNERFCEARELFYRMPD--YDKNVFVVTAMITGFCKVGMLENARLLFERIQPKDCVSF 272 (597)
Q Consensus 199 ~m----~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 272 (597)
+| ..||..||+.++.+|++.|+.+.|.+++..+.+ +.||..+|++|+.+|+++|++++|.++|++|..+|+.+|
T Consensus 278 ~M~~~g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~~s~ 357 (857)
T PLN03077 278 TMRELSVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMETKDAVSW 357 (857)
T ss_pred HHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCCCCCeeeH
Confidence 99 579999999999999999999999999999977 779999999999999999999999999999999999999
Q ss_pred HHHHHHHHHcCChhHHHHHHHHhHHCCCCCCHHHHHHHHHHHhccchhHHHHHHHHHHHHhCCCCcccHHHHHHHHHHhc
Q 007573 273 NAMIAGYAQNGVAEEALRLFSGMIKMDMQPDDATLVSVFTACSALQLLNEGRQSHVLVIRNGFEANVSVCNAVITMYSRC 352 (597)
Q Consensus 273 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 352 (597)
|.+|.+|.+.|++++|+++|++|.+.|+.||..||+.++.+|++.|+++.|.++++.+.+.|+.++..++++|+++|+++
T Consensus 358 n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~ 437 (857)
T PLN03077 358 TAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKC 437 (857)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHhccCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHhccCcHHHHHHHHHHhH
Q 007573 353 GGILDSELAFRQIHSPNLVSWNTIIAAFAQHGHYEKALIFFSQMGLNGFDPDGITFLSLLSACGHAGKVNESMDLFELMV 432 (597)
Q Consensus 353 g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~ 432 (597)
|++++|.++|++|.++|..+|+++|.+|++.|+.++|+++|++|.. ++.||..||+.++.+|++.|.++.+.+++..+.
T Consensus 438 g~~~~A~~vf~~m~~~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~-~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~ 516 (857)
T PLN03077 438 KCIDKALEVFHNIPEKDVISWTSIIAGLRLNNRCFEALIFFRQMLL-TLKPNSVTLIAALSACARIGALMCGKEIHAHVL 516 (857)
T ss_pred CCHHHHHHHHHhCCCCCeeeHHHHHHHHHHCCCHHHHHHHHHHHHh-CCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHH
Confidence 9999999999999999999999999999999999999999999986 689999999999999999999999999999998
Q ss_pred HhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-CCchHH
Q 007573 433 KVYGIIPSSEHYTCLVDILSRAGQLEKAWQITQGMPFEADTGVWGSLLAACVINLNVELGELAAKKMRELDPQ-NSAVYV 511 (597)
Q Consensus 433 ~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~-~~~~~~ 511 (597)
+. |+.++..++++|+++|+++|++++|.++|+++ .||..+|++++.+|.++|+.++|.++|++|.+.+.. |..+|.
T Consensus 517 ~~-g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~--~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~ 593 (857)
T PLN03077 517 RT-GIGFDGFLPNALLDLYVRCGRMNYAWNQFNSH--EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFI 593 (857)
T ss_pred Hh-CCCccceechHHHHHHHHcCCHHHHHHHHHhc--CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHH
Confidence 87 99999999999999999999999999999998 799999999999999999999999999999987643 478899
Q ss_pred HHHHHHHhcCCcHHHHHHHHHHH-hCCCccCC
Q 007573 512 MLSNLYAAAGMWRDVTRVRLLMK-EQGVTKQC 542 (597)
Q Consensus 512 ~l~~~~~~~g~~~~A~~~~~~~~-~~~~~~~~ 542 (597)
.++.+|.+.|++++|.++|+.|. +.|+.|..
T Consensus 594 ~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~ 625 (857)
T PLN03077 594 SLLCACSRSGMVTQGLEYFHSMEEKYSITPNL 625 (857)
T ss_pred HHHHHHhhcChHHHHHHHHHHHHHHhCCCCch
Confidence 99999999999999999999998 57876654
No 4
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=1.6e-63 Score=532.27 Aligned_cols=494 Identities=17% Similarity=0.246 Sum_probs=456.3
Q ss_pred CCCcchHHHHHHHHHhcCChHHHHHHHhhcCCCCcc-----hHHHHHHHHHhCCChhHHHHHHhhCCCCCcchHHHHHHH
Q 007573 47 TQYVFVNNAKISALSRAGKISAARQLFDQMTTKDVI-----TWNAIITGYWQNGFLQESKNLFQSMPVKNIVSWNCMIAG 121 (597)
Q Consensus 47 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-----~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ll~~ 121 (597)
.++...|..++..|++.|++++|+++|++|..++.. +++.++.+|.+.|.+++|..+|+.|..||..+|+.++.+
T Consensus 367 ~~~~~~~~~~y~~l~r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~pd~~Tyn~LL~a 446 (1060)
T PLN03218 367 KRKSPEYIDAYNRLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRNPTLSTFNMLMSV 446 (1060)
T ss_pred CCCchHHHHHHHHHHHCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCCCCHHHHHHHHHH
Confidence 567778999999999999999999999999886554 455677789999999999999999999999999999999
Q ss_pred HHcCCChHHHHHHHccCC----CCChhhHHHHHHHHHcCCChHHHHHHHccCC----CCCchhHHHHHHHHHhCCChhHH
Q 007573 122 CIDNDRIDDAFDYFQAMP----ERNTATYNAMISGFLKHGRLEEATRLFEQMP----RRNVISYTAMLDGFMKKGEVDKA 193 (597)
Q Consensus 122 ~~~~~~~~~A~~~~~~~~----~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~----~~~~~~~~~li~~~~~~g~~~~A 193 (597)
|++.|++++|.++|+.|. .||..+|+.||.+|++.|++++|.++|++|. .||..+|+.||.+|++.|++++|
T Consensus 447 ~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~eeA 526 (1060)
T PLN03218 447 CASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKA 526 (1060)
T ss_pred HHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCHHHH
Confidence 999999999999999998 6899999999999999999999999999998 48999999999999999999999
Q ss_pred HHHHHhc----ccCCcchHHHHHHHHHcCCChHHHHHHHhhcCC----CCCCchHHHHHHHHHHhcCCHHHHHHHHhhcC
Q 007573 194 RALSDYM----SFKNVVSWTVMITGYVKNERFCEARELFYRMPD----YDKNVFVVTAMITGFCKVGMLENARLLFERIQ 265 (597)
Q Consensus 194 ~~~~~~m----~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~----~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 265 (597)
.++|++| ..||..+|+.++.+|++.|++++|.++|++|.. +.||..+|++++.+|++.|++++|.++|+.|.
T Consensus 527 l~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf~~M~ 606 (1060)
T PLN03218 527 FGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIH 606 (1060)
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 9999999 468999999999999999999999999999954 67999999999999999999999999999997
Q ss_pred C----CChhHHHHHHHHHHHcCChhHHHHHHHHhHHCCCCCCHHHHHHHHHHHhccchhHHHHHHHHHHHHhCCCCcccH
Q 007573 266 P----KDCVSFNAMIAGYAQNGVAEEALRLFSGMIKMDMQPDDATLVSVFTACSALQLLNEGRQSHVLVIRNGFEANVSV 341 (597)
Q Consensus 266 ~----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 341 (597)
+ ++..+|+.+|.+|++.|++++|.++|++|.+.|+.||..||+.++.+|++.|+.++|.+++..|.+.|+.|+..+
T Consensus 607 e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~~t 686 (1060)
T PLN03218 607 EYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVS 686 (1060)
T ss_pred HcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHH
Confidence 5 467899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhccC----CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHhc
Q 007573 342 CNAVITMYSRCGGILDSELAFRQIH----SPNLVSWNTIIAAFAQHGHYEKALIFFSQMGLNGFDPDGITFLSLLSACGH 417 (597)
Q Consensus 342 ~~~l~~~~~~~g~~~~A~~~~~~~~----~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~ 417 (597)
|++|+.+|+++|++++|.++|++|. .||..+||.||.+|++.|++++|.++|++|...|+.||..||+.++.+|++
T Consensus 687 ynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL~a~~k 766 (1060)
T PLN03218 687 YSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASER 766 (1060)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Confidence 9999999999999999999999995 799999999999999999999999999999999999999999999999999
Q ss_pred cCcHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhh----c-------------------CCHHHHHHHHhhCC---CCC
Q 007573 418 AGKVNESMDLFELMVKVYGIIPSSEHYTCLVDILSR----A-------------------GQLEKAWQITQGMP---FEA 471 (597)
Q Consensus 418 ~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~-------------------g~~~~A~~~~~~~~---~~p 471 (597)
.|++++|.++|+.|.+. |+.||..+|++++.++.+ + +..++|..+|++|. ..|
T Consensus 767 ~G~le~A~~l~~~M~k~-Gi~pd~~tynsLIglc~~~y~ka~~l~~~v~~f~~g~~~~~n~w~~~Al~lf~eM~~~Gi~P 845 (1060)
T PLN03218 767 KDDADVGLDLLSQAKED-GIKPNLVMCRCITGLCLRRFEKACALGEPVVSFDSGRPQIENKWTSWALMVYRETISAGTLP 845 (1060)
T ss_pred CCCHHHHHHHHHHHHHc-CCCCCHHHHHHHHHHHHHHHHHHhhhhhhhhhhhccccccccchHHHHHHHHHHHHHCCCCC
Confidence 99999999999999887 999999999999876432 2 23467999999997 789
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc-CCCCCchHHHHHHHHHhcCCcHHHHHHHHHHHhCCCccCCC
Q 007573 472 DTGVWGSLLAACVINLNVELGELAAKKMREL-DPQNSAVYVMLSNLYAAAGMWRDVTRVRLLMKEQGVTKQCA 543 (597)
Q Consensus 472 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 543 (597)
|..+|+.++.++...+..+.+..+++.+... .+++..+|..+++.+.+. .++|..++++|...|+.|...
T Consensus 846 d~~T~~~vL~cl~~~~~~~~~~~m~~~m~~~~~~~~~~~y~~Li~g~~~~--~~~A~~l~~em~~~Gi~p~~~ 916 (1060)
T PLN03218 846 TMEVLSQVLGCLQLPHDATLRNRLIENLGISADSQKQSNLSTLVDGFGEY--DPRAFSLLEEAASLGVVPSVS 916 (1060)
T ss_pred CHHHHHHHHHHhcccccHHHHHHHHHHhccCCCCcchhhhHHHHHhhccC--hHHHHHHHHHHHHcCCCCCcc
Confidence 9999999998887888888888888876533 455678899999987332 368999999999999977653
No 5
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=2.4e-59 Score=500.33 Aligned_cols=504 Identities=12% Similarity=0.179 Sum_probs=450.4
Q ss_pred CCcchHHHHHHHHHhCCChhHHHHHHhhCCCC-----CcchHHHHHHHHHcCCChHHHHHHHccCCCCChhhHHHHHHHH
Q 007573 79 KDVITWNAIITGYWQNGFLQESKNLFQSMPVK-----NIVSWNCMIAGCIDNDRIDDAFDYFQAMPERNTATYNAMISGF 153 (597)
Q Consensus 79 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-----~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~ 153 (597)
++...|..++..+++.|++++|+++|++|..+ +..+++.++.+|.+.|.+++|..+++.|..||..+|+.++.+|
T Consensus 368 ~~~~~~~~~y~~l~r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~pd~~Tyn~LL~a~ 447 (1060)
T PLN03218 368 RKSPEYIDAYNRLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRNPTLSTFNMLMSVC 447 (1060)
T ss_pred CCchHHHHHHHHHHHCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCCCCHHHHHHHHHHH
Confidence 67778999999999999999999999999876 4456677888899999999999999999999999999999999
Q ss_pred HcCCChHHHHHHHccCCC----CCchhHHHHHHHHHhCCChhHHHHHHHhcc----cCCcchHHHHHHHHHcCCChHHHH
Q 007573 154 LKHGRLEEATRLFEQMPR----RNVISYTAMLDGFMKKGEVDKARALSDYMS----FKNVVSWTVMITGYVKNERFCEAR 225 (597)
Q Consensus 154 ~~~g~~~~A~~~~~~~~~----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~----~~~~~~~~~ll~~~~~~g~~~~a~ 225 (597)
++.|+++.|.++|++|.+ ||..+|+.||.+|++.|++++|.++|++|. .||..+|+.++.+|++.|++++|.
T Consensus 448 ~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~eeAl 527 (1060)
T PLN03218 448 ASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAF 527 (1060)
T ss_pred HhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCHHHHH
Confidence 999999999999999974 899999999999999999999999999995 689999999999999999999999
Q ss_pred HHHhhcCC--CCCCchHHHHHHHHHHhcCCHHHHHHHHhhcC------CCChhHHHHHHHHHHHcCChhHHHHHHHHhHH
Q 007573 226 ELFYRMPD--YDKNVFVVTAMITGFCKVGMLENARLLFERIQ------PKDCVSFNAMIAGYAQNGVAEEALRLFSGMIK 297 (597)
Q Consensus 226 ~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~------~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 297 (597)
++|+.|.+ +.||..+|+.++.+|++.|++++|.++|++|. .+|..+|+.+|.+|++.|++++|.++|++|.+
T Consensus 528 ~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf~~M~e 607 (1060)
T PLN03218 528 GAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHE 607 (1060)
T ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 99999965 78999999999999999999999999999984 47899999999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHhccchhHHHHHHHHHHHHhCCCCcccHHHHHHHHHHhcCCHHHHHHHHhccC----CCChhhH
Q 007573 298 MDMQPDDATLVSVFTACSALQLLNEGRQSHVLVIRNGFEANVSVCNAVITMYSRCGGILDSELAFRQIH----SPNLVSW 373 (597)
Q Consensus 298 ~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~----~~~~~~~ 373 (597)
.|+.|+..+|+.++.+|++.|++++|..++..|.+.|+.||..+|+.++++|++.|++++|.++++.|. .||..+|
T Consensus 608 ~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~~ty 687 (1060)
T PLN03218 608 YNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSY 687 (1060)
T ss_pred cCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999999997 6899999
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhh
Q 007573 374 NTIIAAFAQHGHYEKALIFFSQMGLNGFDPDGITFLSLLSACGHAGKVNESMDLFELMVKVYGIIPSSEHYTCLVDILSR 453 (597)
Q Consensus 374 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 453 (597)
+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.++.+|++.|++++|.++|++|.+. |+.||..+|+.++.+|++
T Consensus 688 nsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~-Gi~Pd~~Ty~sLL~a~~k 766 (1060)
T PLN03218 688 SSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRL-GLCPNTITYSILLVASER 766 (1060)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHc-CCCCCHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999876 999999999999999999
Q ss_pred cCCHHHHHHHHhhCC---CCCCHHHHHHHHHHHHh----c-------------------CCHHHHHHHHHHHHhcCCC-C
Q 007573 454 AGQLEKAWQITQGMP---FEADTGVWGSLLAACVI----N-------------------LNVELGELAAKKMRELDPQ-N 506 (597)
Q Consensus 454 ~g~~~~A~~~~~~~~---~~p~~~~~~~l~~~~~~----~-------------------g~~~~a~~~~~~~~~~~p~-~ 506 (597)
.|++++|.+++++|. ..||..+|++++..|.+ . +..++|..+|++|++.+.. +
T Consensus 767 ~G~le~A~~l~~~M~k~Gi~pd~~tynsLIglc~~~y~ka~~l~~~v~~f~~g~~~~~n~w~~~Al~lf~eM~~~Gi~Pd 846 (1060)
T PLN03218 767 KDDADVGLDLLSQAKEDGIKPNLVMCRCITGLCLRRFEKACALGEPVVSFDSGRPQIENKWTSWALMVYRETISAGTLPT 846 (1060)
T ss_pred CCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHhhhhhhhhhhhccccccccchHHHHHHHHHHHHHCCCCCC
Confidence 999999999999986 78999999999876542 1 2246799999999988744 4
Q ss_pred CchHHHHHHHHHhcCCcHHHHHHHHHHHhCCCccCCCeeEEEECCEEEEEEeCCCCCcchHHHHHHHHHHHHHHhhcCCc
Q 007573 507 SAVYVMLSNLYAAAGMWRDVTRVRLLMKEQGVTKQCAYSWIEIGNKVHYFLGGDMSHPCIDKIHLELKRASVQMKSVDDF 586 (597)
Q Consensus 507 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~ 586 (597)
..+|..++.++...+..+.+.++++.|...+..+... .+. .++.|...+ ..+++..++.|....-.++-+
T Consensus 847 ~~T~~~vL~cl~~~~~~~~~~~m~~~m~~~~~~~~~~-~y~-------~Li~g~~~~--~~~A~~l~~em~~~Gi~p~~~ 916 (1060)
T PLN03218 847 MEVLSQVLGCLQLPHDATLRNRLIENLGISADSQKQS-NLS-------TLVDGFGEY--DPRAFSLLEEAASLGVVPSVS 916 (1060)
T ss_pred HHHHHHHHHHhcccccHHHHHHHHHHhccCCCCcchh-hhH-------HHHHhhccC--hHHHHHHHHHHHHcCCCCCcc
Confidence 7889999988888999998888888876555432211 111 122222222 356888888887777766665
Q ss_pred cchhcccc
Q 007573 587 VEIATSWS 594 (597)
Q Consensus 587 ~~~~~~~~ 594 (597)
.+.. .|+
T Consensus 917 ~~~~-~~~ 923 (1060)
T PLN03218 917 FKKS-PIV 923 (1060)
T ss_pred cccC-ceE
Confidence 5444 554
No 6
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=1.1e-55 Score=470.56 Aligned_cols=448 Identities=18% Similarity=0.259 Sum_probs=423.1
Q ss_pred CCCcchHHHHHHHHHhcCChHHHHHHHhhcCC-----CCcchHHHHHHHHHhCCChhHHHHHHhhCC----CCCcchHHH
Q 007573 47 TQYVFVNNAKISALSRAGKISAARQLFDQMTT-----KDVITWNAIITGYWQNGFLQESKNLFQSMP----VKNIVSWNC 117 (597)
Q Consensus 47 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~~~~~~~li~~~~~~g~~~~A~~~~~~~~----~~~~~~~~~ 117 (597)
..+...|+.+|..|.+.|++++|.++|+.|.. ||..+|+.++.++++.++++.|..++..|. .+|..+|+.
T Consensus 84 ~~~~~~~~~~i~~l~~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~ 163 (697)
T PLN03081 84 RKSGVSLCSQIEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNR 163 (697)
T ss_pred CCCceeHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHHH
Confidence 45667999999999999999999999999953 688999999999999999999999999986 469999999
Q ss_pred HHHHHHcCCChHHHHHHHccCCCCChhhHHHHHHHHHcCCChHHHHHHHccCC----CCCchhHHHHHHHHHhCCChhHH
Q 007573 118 MIAGCIDNDRIDDAFDYFQAMPERNTATYNAMISGFLKHGRLEEATRLFEQMP----RRNVISYTAMLDGFMKKGEVDKA 193 (597)
Q Consensus 118 ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~----~~~~~~~~~li~~~~~~g~~~~A 193 (597)
++.+|++.|++++|.++|++|..||..+|++++.+|++.|++++|.++|++|. .||..+|+.++.++++.|..+.+
T Consensus 164 Li~~y~k~g~~~~A~~lf~~m~~~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~~ 243 (697)
T PLN03081 164 VLLMHVKCGMLIDARRLFDEMPERNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAG 243 (697)
T ss_pred HHHHHhcCCCHHHHHHHHhcCCCCCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHHHH
Confidence 99999999999999999999999999999999999999999999999999996 48899999999999999999999
Q ss_pred HHHHHhc----ccCCcchHHHHHHHHHcCCChHHHHHHHhhcCCCCCCchHHHHHHHHHHhcCCHHHHHHHHhhcC----
Q 007573 194 RALSDYM----SFKNVVSWTVMITGYVKNERFCEARELFYRMPDYDKNVFVVTAMITGFCKVGMLENARLLFERIQ---- 265 (597)
Q Consensus 194 ~~~~~~m----~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---- 265 (597)
.+++..+ ..+|..+|+.++.+|++.|++++|.++|+.|.. +|..+|++++.+|++.|++++|.++|++|.
T Consensus 244 ~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~--~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~ 321 (697)
T PLN03081 244 QQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPE--KTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGV 321 (697)
T ss_pred HHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCCC--CChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCC
Confidence 9998877 467999999999999999999999999999987 899999999999999999999999999984
Q ss_pred CCChhHHHHHHHHHHHcCChhHHHHHHHHhHHCCCCCCHHHHHHHHHHHhccchhHHHHHHHHHHHHhCCCCcccHHHHH
Q 007573 266 PKDCVSFNAMIAGYAQNGVAEEALRLFSGMIKMDMQPDDATLVSVFTACSALQLLNEGRQSHVLVIRNGFEANVSVCNAV 345 (597)
Q Consensus 266 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 345 (597)
.+|..+|+.++.+|++.|++++|.+++..|.+.|+.||..+++.++.+|++.|+++.|.++|+.|. .+|..+||++
T Consensus 322 ~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~----~~d~~t~n~l 397 (697)
T PLN03081 322 SIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMP----RKNLISWNAL 397 (697)
T ss_pred CCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCC----CCCeeeHHHH
Confidence 579999999999999999999999999999999999999999999999999999999999999985 4789999999
Q ss_pred HHHHHhcCCHHHHHHHHhccC----CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHH-CCCCCChHHHHHHHHHHhccCc
Q 007573 346 ITMYSRCGGILDSELAFRQIH----SPNLVSWNTIIAAFAQHGHYEKALIFFSQMGL-NGFDPDGITFLSLLSACGHAGK 420 (597)
Q Consensus 346 ~~~~~~~g~~~~A~~~~~~~~----~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-~g~~p~~~~~~~ll~~~~~~g~ 420 (597)
|.+|++.|+.++|.++|++|. .||..||+.++.+|++.|..++|.++|+.|.+ .|+.|+..+|+.++.++++.|+
T Consensus 398 I~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~ 477 (697)
T PLN03081 398 IAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGL 477 (697)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCC
Confidence 999999999999999999997 79999999999999999999999999999986 6999999999999999999999
Q ss_pred HHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHhhCC-CCCC-HHHHHHHHHHHHhcCCHHHHHHHHHH
Q 007573 421 VNESMDLFELMVKVYGIIPSSEHYTCLVDILSRAGQLEKAWQITQGMP-FEAD-TGVWGSLLAACVINLNVELGELAAKK 498 (597)
Q Consensus 421 ~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~ 498 (597)
+++|.+++++| ++.|+..+|++|+.+|...|+++.|..+++++. ..|+ ..+|..|+..|.+.|++++|.+++++
T Consensus 478 ~~eA~~~~~~~----~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~~p~~~~~y~~L~~~y~~~G~~~~A~~v~~~ 553 (697)
T PLN03081 478 LDEAYAMIRRA----PFKPTVNMWAALLTACRIHKNLELGRLAAEKLYGMGPEKLNNYVVLLNLYNSSGRQAEAAKVVET 553 (697)
T ss_pred HHHHHHHHHHC----CCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHhCCCCCCCcchHHHHHHHHhCCCHHHHHHHHHH
Confidence 99999998865 789999999999999999999999999998875 5564 67999999999999999999999999
Q ss_pred HHhcCC
Q 007573 499 MRELDP 504 (597)
Q Consensus 499 ~~~~~p 504 (597)
|.+.+-
T Consensus 554 m~~~g~ 559 (697)
T PLN03081 554 LKRKGL 559 (697)
T ss_pred HHHcCC
Confidence 998763
No 7
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=100.00 E-value=3.1e-32 Score=304.43 Aligned_cols=483 Identities=12% Similarity=0.069 Sum_probs=334.4
Q ss_pred CcchHHHHHHHHHhcCChHHHHHHHhhcCC---CCcchHHHHHHHHHhCCChhHHHHHHhhCCCC---CcchHHHHHHHH
Q 007573 49 YVFVNNAKISALSRAGKISAARQLFDQMTT---KDVITWNAIITGYWQNGFLQESKNLFQSMPVK---NIVSWNCMIAGC 122 (597)
Q Consensus 49 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~ll~~~ 122 (597)
++..++.+...|.+.|++++|.+.|+++.+ .+...|..+...+...|++++|+..|+++.+. +......++..+
T Consensus 362 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~ 441 (899)
T TIGR02917 362 DPAALSLLGEAYLALGDFEKAAEYLAKATELDPENAAARTQLGISKLSQGDPSEAIADLETAAQLDPELGRADLLLILSY 441 (899)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhhCCcchhhHHHHHHHH
Confidence 344445555555555555555555555433 12233444445555555555555555554422 233444455555
Q ss_pred HcCCChHHHHHHHccCC---CCChhhHHHHHHHHHcCCChHHHHHHHccCCC---CCchhHHHHHHHHHhCCChhHHHHH
Q 007573 123 IDNDRIDDAFDYFQAMP---ERNTATYNAMISGFLKHGRLEEATRLFEQMPR---RNVISYTAMLDGFMKKGEVDKARAL 196 (597)
Q Consensus 123 ~~~~~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~ 196 (597)
.+.|++++|..+++.+. +.++.++..+...|...|++++|.+.|+++.+ .+...+..++..+...|++++|...
T Consensus 442 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 521 (899)
T TIGR02917 442 LRSGQFDKALAAAKKLEKKQPDNASLHNLLGAIYLGKGDLAKAREAFEKALSIEPDFFPAAANLARIDIQEGNPDDAIQR 521 (899)
T ss_pred HhcCCHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHCCCHHHHHHH
Confidence 56666666666665554 33555666667777777777777777766543 2344566666667777777777777
Q ss_pred HHhccc---CCcchHHHHHHHHHcCCChHHHHHHHhhcCCCCC-CchHHHHHHHHHHhcCCHHHHHHHHhhcCC---CCh
Q 007573 197 SDYMSF---KNVVSWTVMITGYVKNERFCEARELFYRMPDYDK-NVFVVTAMITGFCKVGMLENARLLFERIQP---KDC 269 (597)
Q Consensus 197 ~~~m~~---~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~ 269 (597)
++++.. .+..++..+...+...|+.++|...++.+.+..| +...+..++..|.+.|++++|..+++.+.+ .+.
T Consensus 522 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~ 601 (899)
T TIGR02917 522 FEKVLTIDPKNLRAILALAGLYLRTGNEEEAVAWLEKAAELNPQEIEPALALAQYYLGKGQLKKALAILNEAADAAPDSP 601 (899)
T ss_pred HHHHHHhCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCH
Confidence 776632 2445666677777777777777777777766444 344566677777777777777777777643 355
Q ss_pred hHHHHHHHHHHHcCChhHHHHHHHHhHHCCCCCCHHHHHHHHHHHhccchhHHHHHHHHHHHHhCCCCcccHHHHHHHHH
Q 007573 270 VSFNAMIAGYAQNGVAEEALRLFSGMIKMDMQPDDATLVSVFTACSALQLLNEGRQSHVLVIRNGFEANVSVCNAVITMY 349 (597)
Q Consensus 270 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 349 (597)
..|..++..+...|++++|+..|+++.+.. +.+...+..+...+...|++++|...++.+.+.. +.+...+..++..+
T Consensus 602 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~ 679 (899)
T TIGR02917 602 EAWLMLGRAQLAAGDLNKAVSSFKKLLALQ-PDSALALLLLADAYAVMKNYAKAITSLKRALELK-PDNTEAQIGLAQLL 679 (899)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHH
Confidence 677777888888888888888887777643 2344556666777777788888888887777654 44566777778888
Q ss_pred HhcCCHHHHHHHHhccC---CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHhccCcHHHHHH
Q 007573 350 SRCGGILDSELAFRQIH---SPNLVSWNTIIAAFAQHGHYEKALIFFSQMGLNGFDPDGITFLSLLSACGHAGKVNESMD 426 (597)
Q Consensus 350 ~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~ 426 (597)
...|++++|..+++.+. +.+...+..+...+...|++++|++.|+++... .|+..++..+..++.+.|++++|.+
T Consensus 680 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~ 757 (899)
T TIGR02917 680 LAAKRTESAKKIAKSLQKQHPKAALGFELEGDLYLRQKDYPAAIQAYRKALKR--APSSQNAIKLHRALLASGNTAEAVK 757 (899)
T ss_pred HHcCCHHHHHHHHHHHHhhCcCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhh--CCCchHHHHHHHHHHHCCCHHHHHH
Confidence 88888888888887775 345667777778888888888888888888765 4555667777888888888888888
Q ss_pred HHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHhhCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC
Q 007573 427 LFELMVKVYGIIPSSEHYTCLVDILSRAGQLEKAWQITQGMP--FEADTGVWGSLLAACVINLNVELGELAAKKMRELDP 504 (597)
Q Consensus 427 ~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p 504 (597)
.++.+.+. .+.+...+..++..|.+.|+.++|.+.|+++. .+++..+++.++..+...|+ ++|+..++++++..|
T Consensus 758 ~~~~~l~~--~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~~~ 834 (899)
T TIGR02917 758 TLEAWLKT--HPNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKAPDNAVVLNNLAWLYLELKD-PRALEYAEKALKLAP 834 (899)
T ss_pred HHHHHHHh--CCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCc-HHHHHHHHHHHhhCC
Confidence 88888763 34567788888888888888888888888875 34466788888888888888 778888888888888
Q ss_pred CCCchHHHHHHHHHhcCCcHHHHHHHHHHHhCCC
Q 007573 505 QNSAVYVMLSNLYAAAGMWRDVTRVRLLMKEQGV 538 (597)
Q Consensus 505 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 538 (597)
+++..+..++.++...|++++|.++++++.+.+.
T Consensus 835 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~ 868 (899)
T TIGR02917 835 NIPAILDTLGWLLVEKGEADRALPLLRKAVNIAP 868 (899)
T ss_pred CCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 8888888888888889999999999988887654
No 8
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=100.00 E-value=7.2e-32 Score=301.44 Aligned_cols=483 Identities=11% Similarity=0.065 Sum_probs=424.2
Q ss_pred CCCcchHHHHHHHHHhcCChHHHHHHHhhcCC--C-CcchHHHHHHHHHhCCChhHHHHHHhhCCCC---CcchHHHHHH
Q 007573 47 TQYVFVNNAKISALSRAGKISAARQLFDQMTT--K-DVITWNAIITGYWQNGFLQESKNLFQSMPVK---NIVSWNCMIA 120 (597)
Q Consensus 47 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~ll~ 120 (597)
+.+...+..+...+...|++++|.+.|+++.. | +...+..++..+.+.|++++|+.+++++... ++.++..+..
T Consensus 394 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~ 473 (899)
T TIGR02917 394 PENAAARTQLGISKLSQGDPSEAIADLETAAQLDPELGRADLLLILSYLRSGQFDKALAAAKKLEKKQPDNASLHNLLGA 473 (899)
T ss_pred CCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhhCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCcHHHHHHHH
Confidence 45667888899999999999999999999866 2 3346677888999999999999999998743 7788999999
Q ss_pred HHHcCCChHHHHHHHccCC---CCChhhHHHHHHHHHcCCChHHHHHHHccCCC---CCchhHHHHHHHHHhCCChhHHH
Q 007573 121 GCIDNDRIDDAFDYFQAMP---ERNTATYNAMISGFLKHGRLEEATRLFEQMPR---RNVISYTAMLDGFMKKGEVDKAR 194 (597)
Q Consensus 121 ~~~~~~~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~ 194 (597)
++...|++++|.+.++++. +.+...+..+...+...|++++|.+.++++.+ .+..++..+...+.+.|+.++|.
T Consensus 474 ~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~ 553 (899)
T TIGR02917 474 IYLGKGDLAKAREAFEKALSIEPDFFPAAANLARIDIQEGNPDDAIQRFEKVLTIDPKNLRAILALAGLYLRTGNEEEAV 553 (899)
T ss_pred HHHhCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHcCCHHHHH
Confidence 9999999999999999876 45667888899999999999999999998864 45678899999999999999999
Q ss_pred HHHHhccc---CCcchHHHHHHHHHcCCChHHHHHHHhhcCCCCC-CchHHHHHHHHHHhcCCHHHHHHHHhhcCC---C
Q 007573 195 ALSDYMSF---KNVVSWTVMITGYVKNERFCEARELFYRMPDYDK-NVFVVTAMITGFCKVGMLENARLLFERIQP---K 267 (597)
Q Consensus 195 ~~~~~m~~---~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~ 267 (597)
.+++++.. .+...+..++..+...|++++|..+++.+.+..| +..++..++..|.+.|++++|...|+++.+ .
T Consensus 554 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~ 633 (899)
T TIGR02917 554 AWLEKAAELNPQEIEPALALAQYYLGKGQLKKALAILNEAADAAPDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQPD 633 (899)
T ss_pred HHHHHHHHhCccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Confidence 99999833 3556788899999999999999999999987544 567899999999999999999999998753 4
Q ss_pred ChhHHHHHHHHHHHcCChhHHHHHHHHhHHCCCCCCHHHHHHHHHHHhccchhHHHHHHHHHHHHhCCCCcccHHHHHHH
Q 007573 268 DCVSFNAMIAGYAQNGVAEEALRLFSGMIKMDMQPDDATLVSVFTACSALQLLNEGRQSHVLVIRNGFEANVSVCNAVIT 347 (597)
Q Consensus 268 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 347 (597)
+...+..+...+...|++++|...|+++.+.. +.+..++..+...+...|++++|..+++.+.+.+ +.+...+..+..
T Consensus 634 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~ 711 (899)
T TIGR02917 634 SALALLLLADAYAVMKNYAKAITSLKRALELK-PDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQH-PKAALGFELEGD 711 (899)
T ss_pred ChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cCChHHHHHHHH
Confidence 67789999999999999999999999998753 3457788889999999999999999999998876 567788888999
Q ss_pred HHHhcCCHHHHHHHHhccC--CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHhccCcHHHHH
Q 007573 348 MYSRCGGILDSELAFRQIH--SPNLVSWNTIIAAFAQHGHYEKALIFFSQMGLNGFDPDGITFLSLLSACGHAGKVNESM 425 (597)
Q Consensus 348 ~~~~~g~~~~A~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~ 425 (597)
.+.+.|++++|...|+.+. .|+..++..++..+...|++++|.+.++++.+.. +.+...+..+...+...|+.++|.
T Consensus 712 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~ 790 (899)
T TIGR02917 712 LYLRQKDYPAAIQAYRKALKRAPSSQNAIKLHRALLASGNTAEAVKTLEAWLKTH-PNDAVLRTALAELYLAQKDYDKAI 790 (899)
T ss_pred HHHHCCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcCHHHHH
Confidence 9999999999999999886 4666788889999999999999999999998764 556778888999999999999999
Q ss_pred HHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHhhCC-CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 007573 426 DLFELMVKVYGIIPSSEHYTCLVDILSRAGQLEKAWQITQGMP-FEA-DTGVWGSLLAACVINLNVELGELAAKKMRELD 503 (597)
Q Consensus 426 ~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 503 (597)
+.|+++.+. .++++..+..++..+...|+ .+|+.+++++. ..| +...+..++..+...|++++|...++++++.+
T Consensus 791 ~~~~~~~~~--~p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~ 867 (899)
T TIGR02917 791 KHYRTVVKK--APDNAVVLNNLAWLYLELKD-PRALEYAEKALKLAPNIPAILDTLGWLLVEKGEADRALPLLRKAVNIA 867 (899)
T ss_pred HHHHHHHHh--CCCCHHHHHHHHHHHHhcCc-HHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 999999874 35568899999999999999 88999998875 344 56678889999999999999999999999999
Q ss_pred CCCCchHHHHHHHHHhcCCcHHHHHHHHHHHh
Q 007573 504 PQNSAVYVMLSNLYAAAGMWRDVTRVRLLMKE 535 (597)
Q Consensus 504 p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 535 (597)
|.++.++..++.++.+.|++++|.+++++|++
T Consensus 868 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 899 (899)
T TIGR02917 868 PEAAAIRYHLALALLATGRKAEARKELDKLLN 899 (899)
T ss_pred CCChHHHHHHHHHHHHcCCHHHHHHHHHHHhC
Confidence 99999999999999999999999999999863
No 9
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.96 E-value=7.1e-24 Score=237.59 Aligned_cols=480 Identities=13% Similarity=0.073 Sum_probs=288.9
Q ss_pred CCCcchHHHHHHHHHhcCChHHHHHHHhhcCC--CCcchH-----------------HHHHHHHHhCCChhHHHHHHhhC
Q 007573 47 TQYVFVNNAKISALSRAGKISAARQLFDQMTT--KDVITW-----------------NAIITGYWQNGFLQESKNLFQSM 107 (597)
Q Consensus 47 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~-----------------~~li~~~~~~g~~~~A~~~~~~~ 107 (597)
+.|+.++..++..+.+.|+.++|.+.+++..+ |+...+ ..+...+...|++++|+..|+++
T Consensus 59 p~~p~~~~~~~~~~l~~g~~~~A~~~l~~l~~~~P~~~~~~~~~~~~~~~~~~~~~~l~~A~ll~~~g~~~eA~~~~~~~ 138 (1157)
T PRK11447 59 PNNPDVIAARFRLLLRQGDSDGAQKLLDRLSQLAPDSNAYRSSRTTMLLSTPEGRQALQQARLLATTGRTEEALASYDKL 138 (1157)
T ss_pred CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHhcCCchhhHHHHHHHHHhCCCHHHHHHHHHHH
Confidence 67788899999999999999999999999976 443221 23344678899999999999998
Q ss_pred CCCCcchHH----HHHHHHHcCCChHHHHHHHccCC---CCChhhHHHHHHHHHcCCChHHHHHHHccCCCCCc------
Q 007573 108 PVKNIVSWN----CMIAGCIDNDRIDDAFDYFQAMP---ERNTATYNAMISGFLKHGRLEEATRLFEQMPRRNV------ 174 (597)
Q Consensus 108 ~~~~~~~~~----~ll~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~------ 174 (597)
.+.++.... .........|+.++|.+.++++. +.++..+..+...+...|+.++|+..++++.+...
T Consensus 139 l~~~p~~~~la~~y~~~~~~~~g~~~~A~~~L~~ll~~~P~~~~~~~~LA~ll~~~g~~~eAl~~l~~~~~~~~~~~~aa 218 (1157)
T PRK11447 139 FNGAPPELDLAVEYWRLVAKLPAQRPEAINQLQRLNADYPGNTGLRNTLALLLFSSGRRDEGFAVLEQMAKSPAGRDAAA 218 (1157)
T ss_pred ccCCCCChHHHHHHHHHHhhCCccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCchHHHH
Confidence 865332221 11222234689999999999988 44667888999999999999999999887642100
Q ss_pred -----------------hhH----------------------------------HHHHHHHHhCCChhHHHHHHHhccc-
Q 007573 175 -----------------ISY----------------------------------TAMLDGFMKKGEVDKARALSDYMSF- 202 (597)
Q Consensus 175 -----------------~~~----------------------------------~~li~~~~~~g~~~~A~~~~~~m~~- 202 (597)
..+ ......+...|++++|+..|++...
T Consensus 219 ~~~~~~l~~~~~~~~~~~~l~~~l~~~p~~~~~~~A~~~L~~~~~~~~dp~~~~~~~G~~~~~~g~~~~A~~~l~~aL~~ 298 (1157)
T PRK11447 219 QLWYGQIKDMPVSDASVAALQKYLQVFSDGDSVAAARSQLAEQQKQLADPAFRARAQGLAAVDSGQGGKAIPELQQAVRA 298 (1157)
T ss_pred HHHHHHHhccCCChhhHHHHHHHHHHCCCchHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 000 0113445677889999998888733
Q ss_pred -C-CcchHHHHHHHHHcCCChHHHHHHHhhcCCCCCCch---HH------------HHHHHHHHhcCCHHHHHHHHhhcC
Q 007573 203 -K-NVVSWTVMITGYVKNERFCEARELFYRMPDYDKNVF---VV------------TAMITGFCKVGMLENARLLFERIQ 265 (597)
Q Consensus 203 -~-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~---~~------------~~l~~~~~~~g~~~~A~~~~~~~~ 265 (597)
| +...+..+..++.+.|++++|+..|+++.+..|+.. .+ ......+.+.|++++|+..|+++.
T Consensus 299 ~P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~~~g~~~~~~g~~~eA~~~~~~Al 378 (1157)
T PRK11447 299 NPKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLIQQGDAALKANNLAQAERLYQQAR 378 (1157)
T ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 3 567788888899999999999999998887666432 11 122456778899999999998865
Q ss_pred C---CChhHHHHHHHHHHHcCChhHHHHHHHHhHHCCCCCC-HHHHHHHHHHH---------------------------
Q 007573 266 P---KDCVSFNAMIAGYAQNGVAEEALRLFSGMIKMDMQPD-DATLVSVFTAC--------------------------- 314 (597)
Q Consensus 266 ~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~ll~~~--------------------------- 314 (597)
. .+...+..+...+...|++++|++.|++..+. .|+ ...+..+...+
T Consensus 379 ~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~--~p~~~~a~~~L~~l~~~~~~~~A~~~l~~l~~~~~~~~~~~~ 456 (1157)
T PRK11447 379 QVDNTDSYAVLGLGDVAMARKDYAAAERYYQQALRM--DPGNTNAVRGLANLYRQQSPEKALAFIASLSASQRRSIDDIE 456 (1157)
T ss_pred HhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHhcCHHHHHHHHHhCCHHHHHHHHHHH
Confidence 4 45567788888899999999999999988874 333 22332222222
Q ss_pred ---------------hccchhHHHHHHHHHHHHhCCCCcccHHHHHHHHHHhcCCHHHHHHHHhccC---CCChhhHHHH
Q 007573 315 ---------------SALQLLNEGRQSHVLVIRNGFEANVSVCNAVITMYSRCGGILDSELAFRQIH---SPNLVSWNTI 376 (597)
Q Consensus 315 ---------------~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~l 376 (597)
...|+.++|...++.+++.. +.+..++..+...|.+.|++++|...++++. +.+...+..+
T Consensus 457 ~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~-P~~~~~~~~LA~~~~~~G~~~~A~~~l~~al~~~P~~~~~~~a~ 535 (1157)
T PRK11447 457 RSLQNDRLAQQAEALENQGKWAQAAELQRQRLALD-PGSVWLTYRLAQDLRQAGQRSQADALMRRLAQQKPNDPEQVYAY 535 (1157)
T ss_pred HHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHH
Confidence 23455555555555555443 2234444555555555555555555555442 2222233222
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHCCCCCChH---------HHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChHHHHHH
Q 007573 377 IAAFAQHGHYEKALIFFSQMGLNGFDPDGI---------TFLSLLSACGHAGKVNESMDLFELMVKVYGIIPSSEHYTCL 447 (597)
Q Consensus 377 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~---------~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l 447 (597)
...+...|+.++|+..++.+......++.. .+......+...|+.++|.++++ ..+.+...+..+
T Consensus 536 al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~l~------~~p~~~~~~~~L 609 (1157)
T PRK11447 536 GLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEALLR------QQPPSTRIDLTL 609 (1157)
T ss_pred HHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHHHHH------hCCCCchHHHHH
Confidence 223333444444444433322111000000 00111222333334444443332 012233444455
Q ss_pred HHHHhhcCCHHHHHHHHhhCC-CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCcHH
Q 007573 448 VDILSRAGQLEKAWQITQGMP-FEA-DTGVWGSLLAACVINLNVELGELAAKKMRELDPQNSAVYVMLSNLYAAAGMWRD 525 (597)
Q Consensus 448 ~~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~ 525 (597)
...+.+.|++++|++.|++.. ..| +...+..++..+...|++++|++.++++.+..|+++..+..++.++...|++++
T Consensus 610 a~~~~~~g~~~~A~~~y~~al~~~P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~~p~~~~~~~~la~~~~~~g~~~e 689 (1157)
T PRK11447 610 ADWAQQRGDYAAARAAYQRVLTREPGNADARLGLIEVDIAQGDLAAARAQLAKLPATANDSLNTQRRVALAWAALGDTAA 689 (1157)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHhCCCHHH
Confidence 555555566666665555543 233 344555555555555666666666665555555555555555555656666666
Q ss_pred HHHHHHHHHh
Q 007573 526 VTRVRLLMKE 535 (597)
Q Consensus 526 A~~~~~~~~~ 535 (597)
|.++++++..
T Consensus 690 A~~~~~~al~ 699 (1157)
T PRK11447 690 AQRTFNRLIP 699 (1157)
T ss_pred HHHHHHHHhh
Confidence 6666655554
No 10
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.95 E-value=6.2e-23 Score=230.07 Aligned_cols=406 Identities=10% Similarity=0.036 Sum_probs=320.2
Q ss_pred HHHHHcCCChHHHHHHHccCC---CCChhhHHHHHHHHHcCCChHHHHHHHccCCC--CCc---hhHH------------
Q 007573 119 IAGCIDNDRIDDAFDYFQAMP---ERNTATYNAMISGFLKHGRLEEATRLFEQMPR--RNV---ISYT------------ 178 (597)
Q Consensus 119 l~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~---~~~~------------ 178 (597)
...+...|++++|...|++.. +.+..++..|..+|.+.|++++|+..|++..+ |+. ..|.
T Consensus 276 G~~~~~~g~~~~A~~~l~~aL~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~ 355 (1157)
T PRK11447 276 GLAAVDSGQGGKAIPELQQAVRANPKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLI 355 (1157)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHH
Confidence 345667899999999998877 44778888999999999999999999988764 321 1121
Q ss_pred HHHHHHHhCCChhHHHHHHHhccc---CCcchHHHHHHHHHcCCChHHHHHHHhhcCCCCCC-chHHHHHHHHHHhcCCH
Q 007573 179 AMLDGFMKKGEVDKARALSDYMSF---KNVVSWTVMITGYVKNERFCEARELFYRMPDYDKN-VFVVTAMITGFCKVGML 254 (597)
Q Consensus 179 ~li~~~~~~g~~~~A~~~~~~m~~---~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~ 254 (597)
.....+.+.|++++|+..|+++.. .+...+..+..++...|++++|++.|+++.+..|+ ...+..+...|. .++.
T Consensus 356 ~~g~~~~~~g~~~eA~~~~~~Al~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~~~~a~~~L~~l~~-~~~~ 434 (1157)
T PRK11447 356 QQGDAALKANNLAQAERLYQQARQVDNTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPGNTNAVRGLANLYR-QQSP 434 (1157)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-hcCH
Confidence 224567789999999999998843 34567778889999999999999999999887775 445666666664 4678
Q ss_pred HHHHHHHhhcCCCC------------hhHHHHHHHHHHHcCChhHHHHHHHHhHHCCCCCC-HHHHHHHHHHHhccchhH
Q 007573 255 ENARLLFERIQPKD------------CVSFNAMIAGYAQNGVAEEALRLFSGMIKMDMQPD-DATLVSVFTACSALQLLN 321 (597)
Q Consensus 255 ~~A~~~~~~~~~~~------------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~~~~~ 321 (597)
++|...++.+.... ...+..+...+...|++++|++.|++..+. .|+ ...+..+...+...|+.+
T Consensus 435 ~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~--~P~~~~~~~~LA~~~~~~G~~~ 512 (1157)
T PRK11447 435 EKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLAL--DPGSVWLTYRLAQDLRQAGQRS 512 (1157)
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHH
Confidence 99999888776432 224556777888999999999999999885 454 455667788899999999
Q ss_pred HHHHHHHHHHHhCCCCcccHHHHHHHHHHhcCCHHHHHHHHhccCCC----Chh---------hHHHHHHHHHHcCCHHH
Q 007573 322 EGRQSHVLVIRNGFEANVSVCNAVITMYSRCGGILDSELAFRQIHSP----NLV---------SWNTIIAAFAQHGHYEK 388 (597)
Q Consensus 322 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~---------~~~~li~~~~~~g~~~~ 388 (597)
+|...++.+++.. +.+...+..+...+...|+.++|...++.+... +.. .+..+...+...|+.++
T Consensus 513 ~A~~~l~~al~~~-P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~e 591 (1157)
T PRK11447 513 QADALMRRLAQQK-PNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAE 591 (1157)
T ss_pred HHHHHHHHHHHcC-CCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHH
Confidence 9999999998764 445555666666778899999999999988632 111 12345667888999999
Q ss_pred HHHHHHHHHHCCCCCChHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHhhCC
Q 007573 389 ALIFFSQMGLNGFDPDGITFLSLLSACGHAGKVNESMDLFELMVKVYGIIPSSEHYTCLVDILSRAGQLEKAWQITQGMP 468 (597)
Q Consensus 389 A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 468 (597)
|+.+++. .+++...+..+...+.+.|++++|+..|+.+.+. -+.+...+..++.+|...|++++|++.++...
T Consensus 592 A~~~l~~-----~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~--~P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll 664 (1157)
T PRK11447 592 AEALLRQ-----QPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTR--EPGNADARLGLIEVDIAQGDLAAARAQLAKLP 664 (1157)
T ss_pred HHHHHHh-----CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHh
Confidence 9999872 2455667778888999999999999999999864 23357889999999999999999999999876
Q ss_pred -CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCC------chHHHHHHHHHhcCCcHHHHHHHHHHHh
Q 007573 469 -FEA-DTGVWGSLLAACVINLNVELGELAAKKMRELDPQNS------AVYVMLSNLYAAAGMWRDVTRVRLLMKE 535 (597)
Q Consensus 469 -~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~------~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 535 (597)
..| +...+..+..++...|++++|.++++++++..|+++ ..+..++.++...|++++|++.|++...
T Consensus 665 ~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~a~~~~~~a~~~~~~G~~~~A~~~y~~Al~ 739 (1157)
T PRK11447 665 ATANDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQAKSQPPSMESALVLRDAARFEAQTGQPQQALETYKDAMV 739 (1157)
T ss_pred ccCCCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhCccCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 445 456777888889999999999999999999877654 3566779999999999999999999864
No 11
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.94 E-value=1.4e-23 Score=199.55 Aligned_cols=434 Identities=12% Similarity=0.120 Sum_probs=304.6
Q ss_pred HHHHHHHHHhCCChhHHHHHHhhCCCC---CcchHHHHHHHHHcCCChHHHHHHHccCC---CCChhhHHHHHHHHHcCC
Q 007573 84 WNAIITGYWQNGFLQESKNLFQSMPVK---NIVSWNCMIAGCIDNDRIDDAFDYFQAMP---ERNTATYNAMISGFLKHG 157 (597)
Q Consensus 84 ~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~ll~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~g 157 (597)
...|.+-..+.|++.+|.+.....-+. +......+-..+.+..+++.....-.... +.-..+|..+.+.+...|
T Consensus 51 ~l~lah~~yq~gd~~~a~~h~nmv~~~d~t~~~~llll~ai~~q~~r~d~s~a~~~~a~r~~~q~ae~ysn~aN~~kerg 130 (966)
T KOG4626|consen 51 RLELAHRLYQGGDYKQAEKHCNMVGQEDPTNTERLLLLSAIFFQGSRLDKSSAGSLLAIRKNPQGAEAYSNLANILKERG 130 (966)
T ss_pred HHHHHHHHHhccCHHHHHHHHhHhhccCCCcccceeeehhhhhcccchhhhhhhhhhhhhccchHHHHHHHHHHHHHHhc
Confidence 334445555666666666655444332 12222222233444444443332222222 223456666777777777
Q ss_pred ChHHHHHHHccCCCC---CchhHHHHHHHHHhCCChhHHHHHHHhcccCCc--ch-HHHHHHHHHcCCChHHHHHHHhhc
Q 007573 158 RLEEATRLFEQMPRR---NVISYTAMLDGFMKKGEVDKARALSDYMSFKNV--VS-WTVMITGYVKNERFCEARELFYRM 231 (597)
Q Consensus 158 ~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~--~~-~~~ll~~~~~~g~~~~a~~~~~~~ 231 (597)
++.+|+.+++.+.+. .+..|..+..++...|+.+.|.+.|.....-|+ .. ...+....-..|++++|...|.++
T Consensus 131 ~~~~al~~y~~aiel~p~fida~inla~al~~~~~~~~a~~~~~~alqlnP~l~ca~s~lgnLlka~Grl~ea~~cYlkA 210 (966)
T KOG4626|consen 131 QLQDALALYRAAIELKPKFIDAYINLAAALVTQGDLELAVQCFFEALQLNPDLYCARSDLGNLLKAEGRLEEAKACYLKA 210 (966)
T ss_pred hHHHHHHHHHHHHhcCchhhHHHhhHHHHHHhcCCCcccHHHHHHHHhcCcchhhhhcchhHHHHhhcccchhHHHHHHH
Confidence 777777777766542 345666777777777777777777666643332 22 223334444567777777777776
Q ss_pred CCCCCCc-hHHHHHHHHHHhcCCHHHHHHHHhhcCCCCh---hHHHHHHHHHHHcCChhHHHHHHHHhHHCCCCCC-HHH
Q 007573 232 PDYDKNV-FVVTAMITGFCKVGMLENARLLFERIQPKDC---VSFNAMIAGYAQNGVAEEALRLFSGMIKMDMQPD-DAT 306 (597)
Q Consensus 232 ~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~---~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~ 306 (597)
.+..|.. .+|+.|...+-..|++..|+..|++..+-|+ .+|-.|...|...+.+++|+..|.+.... .|+ ...
T Consensus 211 i~~qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkldP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~l--rpn~A~a 288 (966)
T KOG4626|consen 211 IETQPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLDPNFLDAYINLGNVYKEARIFDRAVSCYLRALNL--RPNHAVA 288 (966)
T ss_pred HhhCCceeeeehhcchHHhhcchHHHHHHHHHHhhcCCCcchHHHhhHHHHHHHHhcchHHHHHHHHHHhc--CCcchhh
Confidence 6665643 3566677777777777777777777655433 46677777777777777777777766653 443 334
Q ss_pred HHHHHHHHhccchhHHHHHHHHHHHHhCCCCcccHHHHHHHHHHhcCCHHHHHHHHhccC---CCChhhHHHHHHHHHHc
Q 007573 307 LVSVFTACSALQLLNEGRQSHVLVIRNGFEANVSVCNAVITMYSRCGGILDSELAFRQIH---SPNLVSWNTIIAAFAQH 383 (597)
Q Consensus 307 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~ 383 (597)
+..+...|...|.++.|...++..++.. +.-...|+.|..++-..|++.+|+..+.+.. +....+.+.+...|...
T Consensus 289 ~gNla~iYyeqG~ldlAI~~Ykral~~~-P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~p~hadam~NLgni~~E~ 367 (966)
T KOG4626|consen 289 HGNLACIYYEQGLLDLAIDTYKRALELQ-PNFPDAYNNLANALKDKGSVTEAVDCYNKALRLCPNHADAMNNLGNIYREQ 367 (966)
T ss_pred ccceEEEEeccccHHHHHHHHHHHHhcC-CCchHHHhHHHHHHHhccchHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh
Confidence 4455555666777777777777776654 3346678888888888899999998888776 44566888899999999
Q ss_pred CCHHHHHHHHHHHHHCCCCCC-hHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCC-hHHHHHHHHHHhhcCCHHHHH
Q 007573 384 GHYEKALIFFSQMGLNGFDPD-GITFLSLLSACGHAGKVNESMDLFELMVKVYGIIPS-SEHYTCLVDILSRAGQLEKAW 461 (597)
Q Consensus 384 g~~~~A~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~ 461 (597)
|.+++|..+|....+ +.|. ...++.|...|-+.|++++|+..+++.. .++|+ ...|+.+...|...|+...|.
T Consensus 368 ~~~e~A~~ly~~al~--v~p~~aaa~nNLa~i~kqqgnl~~Ai~~Ykeal---rI~P~fAda~~NmGnt~ke~g~v~~A~ 442 (966)
T KOG4626|consen 368 GKIEEATRLYLKALE--VFPEFAAAHNNLASIYKQQGNLDDAIMCYKEAL---RIKPTFADALSNMGNTYKEMGDVSAAI 442 (966)
T ss_pred ccchHHHHHHHHHHh--hChhhhhhhhhHHHHHHhcccHHHHHHHHHHHH---hcCchHHHHHHhcchHHHHhhhHHHHH
Confidence 999999999998876 4666 5678999999999999999999999887 67888 789999999999999999999
Q ss_pred HHHhhCC-CCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCcHH
Q 007573 462 QITQGMP-FEAD-TGVWGSLLAACVINLNVELGELAAKKMRELDPQNSAVYVMLSNLYAAAGMWRD 525 (597)
Q Consensus 462 ~~~~~~~-~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~ 525 (597)
+.+.+.. +.|. ....+.|.+.|...|+..+|+..|+.++++.|+.+.+|-.++.++.--.+|.+
T Consensus 443 q~y~rAI~~nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLklkPDfpdA~cNllh~lq~vcdw~D 508 (966)
T KOG4626|consen 443 QCYTRAIQINPTFAEAHSNLASIYKDSGNIPEAIQSYRTALKLKPDFPDAYCNLLHCLQIVCDWTD 508 (966)
T ss_pred HHHHHHHhcCcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHccCCCCchhhhHHHHHHHHHhcccc
Confidence 9998866 6675 56899999999999999999999999999999999999999888776666655
No 12
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.92 E-value=1.5e-20 Score=201.33 Aligned_cols=478 Identities=12% Similarity=0.048 Sum_probs=305.7
Q ss_pred CCCcchHHHHHHHHHhcCChHHHHHHHhhcCC--CCcchHHHHHHHHHhCCChhHHHHHHhhCCCC---CcchHHHHHHH
Q 007573 47 TQYVFVNNAKISALSRAGKISAARQLFDQMTT--KDVITWNAIITGYWQNGFLQESKNLFQSMPVK---NIVSWNCMIAG 121 (597)
Q Consensus 47 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~ll~~ 121 (597)
+.++.++..|...|.+.|++++|+..+++..+ |+-..+..++..+ +++++|..+|+++... +..++..+...
T Consensus 75 P~n~~~~~~LA~~yl~~g~~~~A~~~~~kAv~ldP~n~~~~~~La~i---~~~~kA~~~ye~l~~~~P~n~~~~~~la~~ 151 (987)
T PRK09782 75 PDNIPLTLYLAEAYRHFGHDDRARLLLEDQLKRHPGDARLERSLAAI---PVEVKSVTTVEELLAQQKACDAVPTLRCRS 151 (987)
T ss_pred CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcccHHHHHHHHHh---ccChhHHHHHHHHHHhCCCChhHHHHHHHH
Confidence 56677788888888888888888888888876 3323333333222 7788888888888643 45555555554
Q ss_pred --------HHcCCChHHHHHHHccCCCC--ChhhHHH-HHHHHHcCCChHHHHHHHccCCCC---CchhHHHHHHHHHh-
Q 007573 122 --------CIDNDRIDDAFDYFQAMPER--NTATYNA-MISGFLKHGRLEEATRLFEQMPRR---NVISYTAMLDGFMK- 186 (597)
Q Consensus 122 --------~~~~~~~~~A~~~~~~~~~~--~~~~~~~-l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~- 186 (597)
|.+.+...++++ .+...+ ++.+... +..+|.+.|++++|++++.++.+. +..-...|..+|..
T Consensus 152 ~~~~~~l~y~q~eqAl~AL~--lr~~~~~~~~~vL~L~~~rlY~~l~dw~~Ai~lL~~L~k~~pl~~~~~~~L~~ay~q~ 229 (987)
T PRK09782 152 EVGQNALRLAQLPVARAQLN--DATFAASPEGKTLRTDLLQRAIYLKQWSQADTLYNEARQQNTLSAAERRQWFDVLLAG 229 (987)
T ss_pred hhccchhhhhhHHHHHHHHH--HhhhCCCCCcHHHHHHHHHHHHHHhCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHh
Confidence 555544444444 222233 2333333 377777888888888887777642 22234455556665
Q ss_pred CCChhHHHHHHHhcccCCcchHHHHHHHHHcCCChHHHHHHHhhcCCCC---CCchH-----------------------
Q 007573 187 KGEVDKARALSDYMSFKNVVSWTVMITGYVKNERFCEARELFYRMPDYD---KNVFV----------------------- 240 (597)
Q Consensus 187 ~g~~~~A~~~~~~m~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~---~~~~~----------------------- 240 (597)
.++ +++..+++...+.+...+..++..+.+.|+.++|.++++.+.... |...+
T Consensus 230 l~~-~~a~al~~~~lk~d~~l~~ala~~yi~~G~~~~A~~~L~~~~~~~~~~~~~~~~~~~l~r~~~~~~~~~~~~~~~~ 308 (987)
T PRK09782 230 QLD-DRLLALQSQGIFTDPQSRITYATALAYRGEKARLQHYLIENKPLFTTDAQEKSWLYLLSKYSANPVQALANYTVQF 308 (987)
T ss_pred hCH-HHHHHHhchhcccCHHHHHHHHHHHHHCCCHHHHHHHHHhCcccccCCCccHHHHHHHHhccCchhhhccchhhhh
Confidence 355 666666554444466666777777777777777777777765421 11000
Q ss_pred -------HHHHHHHHHhcCCHHHHHHHHhhcCC--------------------------------CChhHHHHHHHHHHH
Q 007573 241 -------VTAMITGFCKVGMLENARLLFERIQP--------------------------------KDCVSFNAMIAGYAQ 281 (597)
Q Consensus 241 -------~~~l~~~~~~~g~~~~A~~~~~~~~~--------------------------------~~~~~~~~li~~~~~ 281 (597)
.-.++..+.+.++++.++++...-+. .+......+.....+
T Consensus 309 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~l~q~~~~~~~ 388 (987)
T PRK09782 309 ADNRQYVVGATLPVLLKEGQYDAAQKLLATLPANEMLEERYAVSVATRNKAEALRLARLLYQQEPANLTRLDQLTWQLMQ 388 (987)
T ss_pred HHHHHHHHHHHHHHHHhccHHHHHHHHhcCCCcchHHHHHHhhccccCchhHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Confidence 11123344444444444433221100 011112222223334
Q ss_pred cCChhHHHHHHHHhHHC---------------------------------------------------------------
Q 007573 282 NGVAEEALRLFSGMIKM--------------------------------------------------------------- 298 (597)
Q Consensus 282 ~g~~~~A~~~~~~m~~~--------------------------------------------------------------- 298 (597)
.|+.++|.++|++....
T Consensus 389 ~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~al 468 (987)
T PRK09782 389 NGQSREAADLLLQRYPFQGDARLSQTLMARLASLLESHPYLATPAKVAILSKPLPLAEQRQWQSQLPGIADNCPAIVRLL 468 (987)
T ss_pred cccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCCcccchHHHHHhccccccchhHHHHhhhhhhhhhHHHHHHhc
Confidence 44444444444443320
Q ss_pred CCCC---CHHHHHHHHHHHhccchhHHHHHHHHHHHHhCCCCcccHHHHHHHHHHhcCCHHHHHHHHhccC--CCChhhH
Q 007573 299 DMQP---DDATLVSVFTACSALQLLNEGRQSHVLVIRNGFEANVSVCNAVITMYSRCGGILDSELAFRQIH--SPNLVSW 373 (597)
Q Consensus 299 g~~p---~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~ 373 (597)
+..| +...+..+..++.. ++.++|...+....... |+......+...+...|++++|...|+++. +++...+
T Consensus 469 ~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~~--Pd~~~~L~lA~al~~~Gr~eeAi~~~rka~~~~p~~~a~ 545 (987)
T PRK09782 469 GDMSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQRQ--PDAWQHRAVAYQAYQVEDYATALAAWQKISLHDMSNEDL 545 (987)
T ss_pred ccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHhC--CchHHHHHHHHHHHHCCCHHHHHHHHHHHhccCCCcHHH
Confidence 0111 22233333333333 55666776666655543 343333334455568899999999998765 3555567
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhh
Q 007573 374 NTIIAAFAQHGHYEKALIFFSQMGLNGFDPDGITFLSLLSACGHAGKVNESMDLFELMVKVYGIIPSSEHYTCLVDILSR 453 (597)
Q Consensus 374 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 453 (597)
..+...+.+.|+.++|...+++..+.. +++...+..+.......|++++|...+++..+ ..|+...+..+..++.+
T Consensus 546 ~~la~all~~Gd~~eA~~~l~qAL~l~-P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~---l~P~~~a~~~LA~~l~~ 621 (987)
T PRK09782 546 LAAANTAQAAGNGAARDRWLQQAEQRG-LGDNALYWWLHAQRYIPGQPELALNDLTRSLN---IAPSANAYVARATIYRQ 621 (987)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHhCCCHHHHHHHHHHHHH---hCCCHHHHHHHHHHHHH
Confidence 777788888999999999999988754 22233333444455567999999999998875 35678889999999999
Q ss_pred cCCHHHHHHHHhhCC-CCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCcHHHHHHHH
Q 007573 454 AGQLEKAWQITQGMP-FEAD-TGVWGSLLAACVINLNVELGELAAKKMRELDPQNSAVYVMLSNLYAAAGMWRDVTRVRL 531 (597)
Q Consensus 454 ~g~~~~A~~~~~~~~-~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~ 531 (597)
.|+.++|+..+++.. ..|+ ...+..+..++...|++++|+..++++++++|+++.++..++.++...|++++|...++
T Consensus 622 lG~~deA~~~l~~AL~l~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P~~~~a~~nLA~al~~lGd~~eA~~~l~ 701 (987)
T PRK09782 622 RHNVPAAVSDLRAALELEPNNSNYQAALGYALWDSGDIAQSREMLERAHKGLPDDPALIRQLAYVNQRLDDMAATQHYAR 701 (987)
T ss_pred CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 999999999998876 5564 56788888899999999999999999999999999999999999999999999999999
Q ss_pred HHHhCC
Q 007573 532 LMKEQG 537 (597)
Q Consensus 532 ~~~~~~ 537 (597)
+..+..
T Consensus 702 ~Al~l~ 707 (987)
T PRK09782 702 LVIDDI 707 (987)
T ss_pred HHHhcC
Confidence 987644
No 13
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.92 E-value=3.5e-22 Score=190.09 Aligned_cols=416 Identities=11% Similarity=0.144 Sum_probs=342.9
Q ss_pred HHHHHHHHHcCCChHHHHHHHccCCCCC---hhhHHHHHHHHHcCCChHHHHHHHccCCC---CCchhHHHHHHHHHhCC
Q 007573 115 WNCMIAGCIDNDRIDDAFDYFQAMPERN---TATYNAMISGFLKHGRLEEATRLFEQMPR---RNVISYTAMLDGFMKKG 188 (597)
Q Consensus 115 ~~~ll~~~~~~~~~~~A~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g 188 (597)
...|..-..+.|++.+|++.-...-..| ....-.+-.++....+++....--....+ .-..+|..+.+.+-..|
T Consensus 51 ~l~lah~~yq~gd~~~a~~h~nmv~~~d~t~~~~llll~ai~~q~~r~d~s~a~~~~a~r~~~q~ae~ysn~aN~~kerg 130 (966)
T KOG4626|consen 51 RLELAHRLYQGGDYKQAEKHCNMVGQEDPTNTERLLLLSAIFFQGSRLDKSSAGSLLAIRKNPQGAEAYSNLANILKERG 130 (966)
T ss_pred HHHHHHHHHhccCHHHHHHHHhHhhccCCCcccceeeehhhhhcccchhhhhhhhhhhhhccchHHHHHHHHHHHHHHhc
Confidence 4455556678899999998665544222 22333334556666666655443333222 23568999999999999
Q ss_pred ChhHHHHHHHhcccC---CcchHHHHHHHHHcCCChHHHHHHHhhcCCCCCCchH-HHHHHHHHHhcCCHHHHHHHHhhc
Q 007573 189 EVDKARALSDYMSFK---NVVSWTVMITGYVKNERFCEARELFYRMPDYDKNVFV-VTAMITGFCKVGMLENARLLFERI 264 (597)
Q Consensus 189 ~~~~A~~~~~~m~~~---~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~-~~~l~~~~~~~g~~~~A~~~~~~~ 264 (597)
++++|+.+++.+++. .+..|..+..++...|+.+.|.+.|.+..++.|+... .+.+...+...|++++|...+.+.
T Consensus 131 ~~~~al~~y~~aiel~p~fida~inla~al~~~~~~~~a~~~~~~alqlnP~l~ca~s~lgnLlka~Grl~ea~~cYlkA 210 (966)
T KOG4626|consen 131 QLQDALALYRAAIELKPKFIDAYINLAAALVTQGDLELAVQCFFEALQLNPDLYCARSDLGNLLKAEGRLEEAKACYLKA 210 (966)
T ss_pred hHHHHHHHHHHHHhcCchhhHHHhhHHHHHHhcCCCcccHHHHHHHHhcCcchhhhhcchhHHHHhhcccchhHHHHHHH
Confidence 999999999999543 4689999999999999999999999999999887654 455677777899999999988876
Q ss_pred CCCC---hhHHHHHHHHHHHcCChhHHHHHHHHhHHCCCCCC-HHHHHHHHHHHhccchhHHHHHHHHHHHHhCCCCccc
Q 007573 265 QPKD---CVSFNAMIAGYAQNGVAEEALRLFSGMIKMDMQPD-DATLVSVFTACSALQLLNEGRQSHVLVIRNGFEANVS 340 (597)
Q Consensus 265 ~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 340 (597)
.+.+ .++|+.|...+..+|+...|+..|++..+. .|+ ...|..+-..+...+.++.|...+..+.... +....
T Consensus 211 i~~qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkl--dP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~lr-pn~A~ 287 (966)
T KOG4626|consen 211 IETQPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKL--DPNFLDAYINLGNVYKEARIFDRAVSCYLRALNLR-PNHAV 287 (966)
T ss_pred HhhCCceeeeehhcchHHhhcchHHHHHHHHHHhhcC--CCcchHHHhhHHHHHHHHhcchHHHHHHHHHHhcC-Ccchh
Confidence 6533 368999999999999999999999998874 554 3467778888888888999988888776654 44567
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHhccC--CCC-hhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC-hHHHHHHHHHHh
Q 007573 341 VCNAVITMYSRCGGILDSELAFRQIH--SPN-LVSWNTIIAAFAQHGHYEKALIFFSQMGLNGFDPD-GITFLSLLSACG 416 (597)
Q Consensus 341 ~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~ll~~~~ 416 (597)
++..+...|..+|.++-|+..+++.. .|+ ...|+.|..++...|+..+|...+.+.... .|+ ....+.|...+.
T Consensus 288 a~gNla~iYyeqG~ldlAI~~Ykral~~~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l--~p~hadam~NLgni~~ 365 (966)
T KOG4626|consen 288 AHGNLACIYYEQGLLDLAIDTYKRALELQPNFPDAYNNLANALKDKGSVTEAVDCYNKALRL--CPNHADAMNNLGNIYR 365 (966)
T ss_pred hccceEEEEeccccHHHHHHHHHHHHhcCCCchHHHhHHHHHHHhccchHHHHHHHHHHHHh--CCccHHHHHHHHHHHH
Confidence 78888889999999999999999887 344 569999999999999999999999998875 454 668889999999
Q ss_pred ccCcHHHHHHHHHHhHHhcCCCCC-hHHHHHHHHHHhhcCCHHHHHHHHhhCC-CCCC-HHHHHHHHHHHHhcCCHHHHH
Q 007573 417 HAGKVNESMDLFELMVKVYGIIPS-SEHYTCLVDILSRAGQLEKAWQITQGMP-FEAD-TGVWGSLLAACVINLNVELGE 493 (597)
Q Consensus 417 ~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p~-~~~~~~l~~~~~~~g~~~~a~ 493 (597)
..|.+++|..+|.... .+.|. ....+.|...|...|++++|...+++.. ++|+ ...++.++..|...|+.+.|+
T Consensus 366 E~~~~e~A~~ly~~al---~v~p~~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI~P~fAda~~NmGnt~ke~g~v~~A~ 442 (966)
T KOG4626|consen 366 EQGKIEEATRLYLKAL---EVFPEFAAAHNNLASIYKQQGNLDDAIMCYKEALRIKPTFADALSNMGNTYKEMGDVSAAI 442 (966)
T ss_pred HhccchHHHHHHHHHH---hhChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHhcCchHHHHHHhcchHHHHhhhHHHHH
Confidence 9999999999999887 44566 6788999999999999999999999876 8887 558999999999999999999
Q ss_pred HHHHHHHhcCCCCCchHHHHHHHHHhcCCcHHHHHHHHHHHhCCC
Q 007573 494 LAAKKMRELDPQNSAVYVMLSNLYAAAGMWRDVTRVRLLMKEQGV 538 (597)
Q Consensus 494 ~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 538 (597)
+.+.+++..+|.-..++..|+.+|-..|+..+|+.-|+...+..+
T Consensus 443 q~y~rAI~~nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLklkP 487 (966)
T KOG4626|consen 443 QCYTRAIQINPTFAEAHSNLASIYKDSGNIPEAIQSYRTALKLKP 487 (966)
T ss_pred HHHHHHHhcCcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHccCC
Confidence 999999999999999999999999999999999999999876443
No 14
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.91 E-value=1e-19 Score=195.03 Aligned_cols=441 Identities=10% Similarity=0.025 Sum_probs=309.6
Q ss_pred HHHHHhCCChhHHHHHHhhCCCC---CcchHHHHHHHHHc-CCChHHHHHHHccCCCCChhhHHHHHHHHHcCCChHHHH
Q 007573 88 ITGYWQNGFLQESKNLFQSMPVK---NIVSWNCMIAGCID-NDRIDDAFDYFQAMPERNTATYNAMISGFLKHGRLEEAT 163 (597)
Q Consensus 88 i~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~ll~~~~~-~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 163 (597)
...|.+.|++++|+.++.++.+. +......|..+|.. .++ +++..+++...+.++.++..++..|.+.|+.++|.
T Consensus 189 ~rlY~~l~dw~~Ai~lL~~L~k~~pl~~~~~~~L~~ay~q~l~~-~~a~al~~~~lk~d~~l~~ala~~yi~~G~~~~A~ 267 (987)
T PRK09782 189 LQRAIYLKQWSQADTLYNEARQQNTLSAAERRQWFDVLLAGQLD-DRLLALQSQGIFTDPQSRITYATALAYRGEKARLQ 267 (987)
T ss_pred HHHHHHHhCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhhCH-HHHHHHhchhcccCHHHHHHHHHHHHHCCCHHHHH
Confidence 55666666666666666666543 33334444455555 244 55655555433456666667777777777777777
Q ss_pred HHHccCCC-----CCch------------------------------hHHHHHHHHHhCCChhHHHHHHHhc--------
Q 007573 164 RLFEQMPR-----RNVI------------------------------SYTAMLDGFMKKGEVDKARALSDYM-------- 200 (597)
Q Consensus 164 ~~~~~~~~-----~~~~------------------------------~~~~li~~~~~~g~~~~A~~~~~~m-------- 200 (597)
++++++.. |+.. ....++..+.+.++++.+.++...-
T Consensus 268 ~~L~~~~~~~~~~~~~~~~~~~l~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 347 (987)
T PRK09782 268 HYLIENKPLFTTDAQEKSWLYLLSKYSANPVQALANYTVQFADNRQYVVGATLPVLLKEGQYDAAQKLLATLPANEMLEE 347 (987)
T ss_pred HHHHhCcccccCCCccHHHHHHHHhccCchhhhccchhhhhHHHHHHHHHHHHHHHHhccHHHHHHHHhcCCCcchHHHH
Confidence 77766642 1110 1112245555566666555443211
Q ss_pred -----------------------ccC-CcchHHHHHHHHHcCCChHHHHHHHhhcCCCCCCc----hHHHHHHHHHHhcC
Q 007573 201 -----------------------SFK-NVVSWTVMITGYVKNERFCEARELFYRMPDYDKNV----FVVTAMITGFCKVG 252 (597)
Q Consensus 201 -----------------------~~~-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~----~~~~~l~~~~~~~g 252 (597)
..| +....-.+.-...+.|+.++|.++++......++. ....-++..|.+.+
T Consensus 348 r~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~ 427 (987)
T PRK09782 348 RYAVSVATRNKAEALRLARLLYQQEPANLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARLSQTLMARLASLLESHP 427 (987)
T ss_pred HHhhccccCchhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCC
Confidence 001 22222223334456788888888888887643332 33446777777766
Q ss_pred C---HHHHHHH-------------------------HhhcCC---C--ChhHHHHHHHHHHHcCChhHHHHHHHHhHHCC
Q 007573 253 M---LENARLL-------------------------FERIQP---K--DCVSFNAMIAGYAQNGVAEEALRLFSGMIKMD 299 (597)
Q Consensus 253 ~---~~~A~~~-------------------------~~~~~~---~--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 299 (597)
. ..++..+ +..... . +...|..+..++.. +++++|+..+.+....
T Consensus 428 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~- 505 (987)
T PRK09782 428 YLATPAKVAILSKPLPLAEQRQWQSQLPGIADNCPAIVRLLGDMSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQR- 505 (987)
T ss_pred cccchHHHHHhccccccchhHHHHhhhhhhhhhHHHHHHhcccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHh-
Confidence 5 2333222 222221 2 56678888888877 8899999988887765
Q ss_pred CCCCHHHHHHHHHHHhccchhHHHHHHHHHHHHhCCCCcccHHHHHHHHHHhcCCHHHHHHHHhccCCCChh---hHHHH
Q 007573 300 MQPDDATLVSVFTACSALQLLNEGRQSHVLVIRNGFEANVSVCNAVITMYSRCGGILDSELAFRQIHSPNLV---SWNTI 376 (597)
Q Consensus 300 ~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~---~~~~l 376 (597)
.|+......+..++...|++++|...++.+... +|+...+..+...+.+.|+.++|...++.....++. .+..+
T Consensus 506 -~Pd~~~~L~lA~al~~~Gr~eeAi~~~rka~~~--~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l~P~~~~l~~~L 582 (987)
T PRK09782 506 -QPDAWQHRAVAYQAYQVEDYATALAAWQKISLH--DMSNEDLLAAANTAQAAGNGAARDRWLQQAEQRGLGDNALYWWL 582 (987)
T ss_pred -CCchHHHHHHHHHHHHCCCHHHHHHHHHHHhcc--CCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCccHHHHHHH
Confidence 477665545555567899999999999987554 444555667788899999999999999887743322 33333
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCC-hHHHHHHHHHHhhcC
Q 007573 377 IAAFAQHGHYEKALIFFSQMGLNGFDPDGITFLSLLSACGHAGKVNESMDLFELMVKVYGIIPS-SEHYTCLVDILSRAG 455 (597)
Q Consensus 377 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g 455 (597)
.......|++++|+..+++..+. .|+...+..+..++.+.|++++|...+++.... .|+ ...+..+..++...|
T Consensus 583 a~~l~~~Gr~~eAl~~~~~AL~l--~P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~l---~Pd~~~a~~nLG~aL~~~G 657 (987)
T PRK09782 583 HAQRYIPGQPELALNDLTRSLNI--APSANAYVARATIYRQRHNVPAAVSDLRAALEL---EPNNSNYQAALGYALWDSG 657 (987)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHh--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHCC
Confidence 33444569999999999999875 577888999999999999999999999998853 454 778889999999999
Q ss_pred CHHHHHHHHhhCC-CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCcHHHHHHHHHH
Q 007573 456 QLEKAWQITQGMP-FEA-DTGVWGSLLAACVINLNVELGELAAKKMRELDPQNSAVYVMLSNLYAAAGMWRDVTRVRLLM 533 (597)
Q Consensus 456 ~~~~A~~~~~~~~-~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 533 (597)
++++|++.+++.. ..| +...+..+..++...|++++|+..++++++++|++..+....++......+++.|.+-+++.
T Consensus 658 ~~eeAi~~l~~AL~l~P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l~P~~a~i~~~~g~~~~~~~~~~~a~~~~~r~ 737 (987)
T PRK09782 658 DIAQSREMLERAHKGLPDDPALIRQLAYVNQRLDDMAATQHYARLVIDDIDNQALITPLTPEQNQQRFNFRRLHEEVGRR 737 (987)
T ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCchhhhhhhHHHHHHHHHHHHHHHHHHH
Confidence 9999999999876 555 56789999999999999999999999999999999999999999999999999999998887
Q ss_pred HhCCCc
Q 007573 534 KEQGVT 539 (597)
Q Consensus 534 ~~~~~~ 539 (597)
...++.
T Consensus 738 ~~~~~~ 743 (987)
T PRK09782 738 WTFSFD 743 (987)
T ss_pred hhcCcc
Confidence 765543
No 15
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.90 E-value=3.7e-20 Score=195.16 Aligned_cols=414 Identities=12% Similarity=0.004 Sum_probs=272.6
Q ss_pred HHHHHHHHHcCCChHHHHHHHccCC--CCChhhHHHHHHHHHcCCChHHHHHHHccCCCC---CchhHHHHHHHHHhCCC
Q 007573 115 WNCMIAGCIDNDRIDDAFDYFQAMP--ERNTATYNAMISGFLKHGRLEEATRLFEQMPRR---NVISYTAMLDGFMKKGE 189 (597)
Q Consensus 115 ~~~ll~~~~~~~~~~~A~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~ 189 (597)
+......+.+.|++++|+..|++.. .|++..|..+..+|.+.|++++|+..++...+. +...|..+..+|...|+
T Consensus 130 ~k~~G~~~~~~~~~~~Ai~~y~~al~~~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~p~~~~a~~~~a~a~~~lg~ 209 (615)
T TIGR00990 130 LKEKGNKAYRNKDFNKAIKLYSKAIECKPDPVYYSNRAACHNALGDWEKVVEDTTAALELDPDYSKALNRRANAYDGLGK 209 (615)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCC
Confidence 3344555666677777777776655 455666666677777777777777777665532 34466666777777777
Q ss_pred hhHHHHHHHhcccCCc---chHHHHHHHHHcCCChHHHHHHHhhcCCCCCCchHHHHHHHHHHhcCCHHHHHHHHhhcCC
Q 007573 190 VDKARALSDYMSFKNV---VSWTVMITGYVKNERFCEARELFYRMPDYDKNVFVVTAMITGFCKVGMLENARLLFERIQP 266 (597)
Q Consensus 190 ~~~A~~~~~~m~~~~~---~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 266 (597)
+++|+..|......+. .....++..+........+...++.- +++...+..+...+ .....+....-+....+
T Consensus 210 ~~eA~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~~l~~~---~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 285 (615)
T TIGR00990 210 YADALLDLTASCIIDGFRNEQSAQAVERLLKKFAESKAKEILETK---PENLPSVTFVGNYL-QSFRPKPRPAGLEDSNE 285 (615)
T ss_pred HHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHHHHHHHhcC---CCCCCCHHHHHHHH-HHccCCcchhhhhcccc
Confidence 7777666654422111 11111111111111112222222211 11222222222222 11111111111111111
Q ss_pred CCh---hHHHHHHHH---HHHcCChhHHHHHHHHhHHCC-CCCC-HHHHHHHHHHHhccchhHHHHHHHHHHHHhCCCCc
Q 007573 267 KDC---VSFNAMIAG---YAQNGVAEEALRLFSGMIKMD-MQPD-DATLVSVFTACSALQLLNEGRQSHVLVIRNGFEAN 338 (597)
Q Consensus 267 ~~~---~~~~~li~~---~~~~g~~~~A~~~~~~m~~~g-~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~ 338 (597)
.+. ..+..+... ....+++++|++.|++..+.+ ..|+ ...+..+...+...|++++|...++.+++.. +..
T Consensus 286 ~~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~-P~~ 364 (615)
T TIGR00990 286 LDEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELD-PRV 364 (615)
T ss_pred cccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCc
Confidence 111 111111111 123467899999999988765 3343 3456666667778899999999999988764 344
Q ss_pred ccHHHHHHHHHHhcCCHHHHHHHHhccC---CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHH
Q 007573 339 VSVCNAVITMYSRCGGILDSELAFRQIH---SPNLVSWNTIIAAFAQHGHYEKALIFFSQMGLNGFDPDGITFLSLLSAC 415 (597)
Q Consensus 339 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~ 415 (597)
...+..+...+...|++++|...|+... +.+...|..+...+...|++++|+..|++..+.. +.+...+..+..++
T Consensus 365 ~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~-P~~~~~~~~la~~~ 443 (615)
T TIGR00990 365 TQSYIKRASMNLELGDPDKAEEDFDKALKLNSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLD-PDFIFSHIQLGVTQ 443 (615)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-ccCHHHHHHHHHHH
Confidence 5678888889999999999999998775 4567789999999999999999999999998753 33466777788889
Q ss_pred hccCcHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHhhCC-CCCCH-H-------HHHHHHHHHHhc
Q 007573 416 GHAGKVNESMDLFELMVKVYGIIPSSEHYTCLVDILSRAGQLEKAWQITQGMP-FEADT-G-------VWGSLLAACVIN 486 (597)
Q Consensus 416 ~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p~~-~-------~~~~l~~~~~~~ 486 (597)
.+.|++++|...|+...+. .+.++..+..+..++...|++++|.+.|++.. ..|+. . .++..+..+...
T Consensus 444 ~~~g~~~eA~~~~~~al~~--~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~~ 521 (615)
T TIGR00990 444 YKEGSIASSMATFRRCKKN--FPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALALFQWK 521 (615)
T ss_pred HHCCCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHHHHHHHHHHh
Confidence 9999999999999998863 33457889999999999999999999998854 44431 1 112222234456
Q ss_pred CCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCcHHHHHHHHHHHhC
Q 007573 487 LNVELGELAAKKMRELDPQNSAVYVMLSNLYAAAGMWRDVTRVRLLMKEQ 536 (597)
Q Consensus 487 g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 536 (597)
|++++|...++++++++|++..++..++.++...|++++|++.+++..+.
T Consensus 522 ~~~~eA~~~~~kAl~l~p~~~~a~~~la~~~~~~g~~~eAi~~~e~A~~l 571 (615)
T TIGR00990 522 QDFIEAENLCEKALIIDPECDIAVATMAQLLLQQGDVDEALKLFERAAEL 571 (615)
T ss_pred hhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 99999999999999999999889999999999999999999999998764
No 16
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.87 E-value=1.4e-19 Score=181.28 Aligned_cols=301 Identities=11% Similarity=0.059 Sum_probs=202.3
Q ss_pred HHHHHcCCChHHHHHHHhhcCCCCCC-chHHHHHHHHHHhcCCHHHHHHHHhhcCCCC-------hhHHHHHHHHHHHcC
Q 007573 212 ITGYVKNERFCEARELFYRMPDYDKN-VFVVTAMITGFCKVGMLENARLLFERIQPKD-------CVSFNAMIAGYAQNG 283 (597)
Q Consensus 212 l~~~~~~g~~~~a~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-------~~~~~~li~~~~~~g 283 (597)
...+...|++++|...|..+.+..|+ ..++..+...+.+.|++++|..+++.+.... ...+..++..|.+.|
T Consensus 42 g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g 121 (389)
T PRK11788 42 GLNFLLNEQPDKAIDLFIEMLKVDPETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAG 121 (389)
T ss_pred HHHHHhcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCC
Confidence 33445566677777777776665553 3356666666666666666666666654321 134556666666666
Q ss_pred ChhHHHHHHHHhHHCCCCCCHHHHHHHHHHHhccchhHHHHHHHHHHHHhCCCCcccHHHHHHHHHHhcCCHHHHHHHHh
Q 007573 284 VAEEALRLFSGMIKMDMQPDDATLVSVFTACSALQLLNEGRQSHVLVIRNGFEANVSVCNAVITMYSRCGGILDSELAFR 363 (597)
Q Consensus 284 ~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 363 (597)
++++|+.+|+++.+.. +++..++..+...+...|++++|...++.+.+.+..+....
T Consensus 122 ~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~---------------------- 178 (389)
T PRK11788 122 LLDRAEELFLQLVDEG-DFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVE---------------------- 178 (389)
T ss_pred CHHHHHHHHHHHHcCC-cchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHH----------------------
Confidence 6666666666665531 22344444455555555555555555554444321110000
Q ss_pred ccCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChHH
Q 007573 364 QIHSPNLVSWNTIIAAFAQHGHYEKALIFFSQMGLNGFDPDGITFLSLLSACGHAGKVNESMDLFELMVKVYGIIPSSEH 443 (597)
Q Consensus 364 ~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~ 443 (597)
....+..+...+...|++++|...|+++.+.. +.+...+..+...+.+.|++++|.++++++.+. +.......
T Consensus 179 -----~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~-~p~~~~~~ 251 (389)
T PRK11788 179 -----IAHFYCELAQQALARGDLDAARALLKKALAAD-PQCVRASILLGDLALAQGDYAAAIEALERVEEQ-DPEYLSEV 251 (389)
T ss_pred -----HHHHHHHHHHHHHhCCCHHHHHHHHHHHHhHC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH-ChhhHHHH
Confidence 01134556667778888899999888887653 233556777778888899999999999888754 21112456
Q ss_pred HHHHHHHHhhcCCHHHHHHHHhhCC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHh---
Q 007573 444 YTCLVDILSRAGQLEKAWQITQGMP-FEADTGVWGSLLAACVINLNVELGELAAKKMRELDPQNSAVYVMLSNLYAA--- 519 (597)
Q Consensus 444 ~~~l~~~~~~~g~~~~A~~~~~~~~-~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~--- 519 (597)
+..++.+|.+.|++++|.+.++++. ..|+...+..++..+...|++++|...++++++..|++.. +..+...+..
T Consensus 252 ~~~l~~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~~P~~~~-~~~l~~~~~~~~~ 330 (389)
T PRK11788 252 LPKLMECYQALGDEAEGLEFLRRALEEYPGADLLLALAQLLEEQEGPEAAQALLREQLRRHPSLRG-FHRLLDYHLAEAE 330 (389)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHhCCHHHHHHHHHHHHHhCcCHHH-HHHHHHHhhhccC
Confidence 7888899999999999999998876 5677777788888999999999999999999999988764 4455555443
Q ss_pred cCCcHHHHHHHHHHHhCCCccCCC
Q 007573 520 AGMWRDVTRVRLLMKEQGVTKQCA 543 (597)
Q Consensus 520 ~g~~~~A~~~~~~~~~~~~~~~~~ 543 (597)
.|+.+++..++++|.++++++.|.
T Consensus 331 ~g~~~~a~~~~~~~~~~~~~~~p~ 354 (389)
T PRK11788 331 EGRAKESLLLLRDLVGEQLKRKPR 354 (389)
T ss_pred CccchhHHHHHHHHHHHHHhCCCC
Confidence 568999999999999999888886
No 17
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.86 E-value=3.2e-18 Score=179.83 Aligned_cols=324 Identities=10% Similarity=-0.039 Sum_probs=224.7
Q ss_pred HHHHHHHHHhCCChhHHHHHHHhcc---cCCcchHHHHHHHHHcCCChHHHHHHHhhcCCCCCC-chHHHHHHHHHHhcC
Q 007573 177 YTAMLDGFMKKGEVDKARALSDYMS---FKNVVSWTVMITGYVKNERFCEARELFYRMPDYDKN-VFVVTAMITGFCKVG 252 (597)
Q Consensus 177 ~~~li~~~~~~g~~~~A~~~~~~m~---~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~-~~~~~~l~~~~~~~g 252 (597)
...++..+.+.|++++|+.+++... ..+...+..++.+....|++++|...++.+....|+ ...+..+...+.+.|
T Consensus 45 ~~~~~~~~~~~g~~~~A~~l~~~~l~~~p~~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~P~~~~a~~~la~~l~~~g 124 (656)
T PRK15174 45 IILFAIACLRKDETDVGLTLLSDRVLTAKNGRDLLRRWVISPLASSQPDAVLQVVNKLLAVNVCQPEDVLLVASVLLKSK 124 (656)
T ss_pred HHHHHHHHHhcCCcchhHHHhHHHHHhCCCchhHHHHHhhhHhhcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcC
Confidence 3445566667777777777776662 223445555666666677777777777777776664 445666677777777
Q ss_pred CHHHHHHHHhhcCC---CChhHHHHHHHHHHHcCChhHHHHHHHHhHHCCCCCCHHHHHHHHHHHhccchhHHHHHHHHH
Q 007573 253 MLENARLLFERIQP---KDCVSFNAMIAGYAQNGVAEEALRLFSGMIKMDMQPDDATLVSVFTACSALQLLNEGRQSHVL 329 (597)
Q Consensus 253 ~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~ 329 (597)
++++|...+++... .+...+..++..+...|++++|...++++......+.. .+.. +..+...|++++|...+..
T Consensus 125 ~~~~Ai~~l~~Al~l~P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~~~~-a~~~-~~~l~~~g~~~eA~~~~~~ 202 (656)
T PRK15174 125 QYATVADLAEQAWLAFSGNSQIFALHLRTLVLMDKELQAISLARTQAQEVPPRGD-MIAT-CLSFLNKSRLPEDHDLARA 202 (656)
T ss_pred CHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCCHH-HHHH-HHHHHHcCCHHHHHHHHHH
Confidence 77777777776543 34556777777777777777777777776654322222 2222 2335667777777777777
Q ss_pred HHHhCCCCcccHHHHHHHHHHhcCCHHHHHHHHhccC---CCChhhHHHHHHHHHHcCCHHH----HHHHHHHHHHCCCC
Q 007573 330 VIRNGFEANVSVCNAVITMYSRCGGILDSELAFRQIH---SPNLVSWNTIIAAFAQHGHYEK----ALIFFSQMGLNGFD 402 (597)
Q Consensus 330 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~----A~~~~~~m~~~g~~ 402 (597)
+++....++......+...+.+.|++++|+..++... +.+...+..+...+...|++++ |+..|++..+.. +
T Consensus 203 ~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~-P 281 (656)
T PRK15174 203 LLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARGLDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFN-S 281 (656)
T ss_pred HHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhC-C
Confidence 6665433334444555667778888888888887765 4456677778888888888875 788888887652 2
Q ss_pred CChHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCC-hHHHHHHHHHHhhcCCHHHHHHHHhhCC-CCCCHHH-HHHH
Q 007573 403 PDGITFLSLLSACGHAGKVNESMDLFELMVKVYGIIPS-SEHYTCLVDILSRAGQLEKAWQITQGMP-FEADTGV-WGSL 479 (597)
Q Consensus 403 p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p~~~~-~~~l 479 (597)
.+...+..+...+...|++++|...++++.+. .|+ ...+..+..+|.+.|++++|.+.++++. ..|+... +..+
T Consensus 282 ~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l---~P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~P~~~~~~~~~ 358 (656)
T PRK15174 282 DNVRIVTLYADALIRTGQNEKAIPLLQQSLAT---HPDLPYVRAMYARALRQVGQYTAASDEFVQLAREKGVTSKWNRYA 358 (656)
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccchHHHHHH
Confidence 34567778888888888999999888888753 343 5667778888888899999988888776 5565443 3445
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhcCCCC
Q 007573 480 LAACVINLNVELGELAAKKMRELDPQN 506 (597)
Q Consensus 480 ~~~~~~~g~~~~a~~~~~~~~~~~p~~ 506 (597)
..++...|+.++|+..++++++..|++
T Consensus 359 a~al~~~G~~deA~~~l~~al~~~P~~ 385 (656)
T PRK15174 359 AAALLQAGKTSEAESVFEHYIQARASH 385 (656)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhChhh
Confidence 667888899999999999999888886
No 18
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.86 E-value=8.9e-18 Score=180.36 Aligned_cols=394 Identities=8% Similarity=0.007 Sum_probs=212.3
Q ss_pred CcchHHHHHHHHHcCCChHHHHHHHccCCC---CChhhHHHHHHHHHcCCChHHHHHHHccCCC---CCchhHHHHHHHH
Q 007573 111 NIVSWNCMIAGCIDNDRIDDAFDYFQAMPE---RNTATYNAMISGFLKHGRLEEATRLFEQMPR---RNVISYTAMLDGF 184 (597)
Q Consensus 111 ~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~ 184 (597)
+..-..-.+.+....|+.++|++++....+ .+...+..+...+.+.|++++|..+|++..+ .+...+..++..+
T Consensus 14 ~~~~~~d~~~ia~~~g~~~~A~~~~~~~~~~~~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~l 93 (765)
T PRK10049 14 SNNQIADWLQIALWAGQDAEVITVYNRYRVHMQLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLEPQNDDYQRGLILTL 93 (765)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 333344444555566666666666666552 2333456666666666666666666666432 2344455566666
Q ss_pred HhCCChhHHHHHHHhccc--C-CcchHHHHHHHHHcCCChHHHHHHHhhcCCCCCCc-hHHHHHHHHHHhcCCHHHHHHH
Q 007573 185 MKKGEVDKARALSDYMSF--K-NVVSWTVMITGYVKNERFCEARELFYRMPDYDKNV-FVVTAMITGFCKVGMLENARLL 260 (597)
Q Consensus 185 ~~~g~~~~A~~~~~~m~~--~-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~ 260 (597)
...|++++|+..+++... | +.. +..+..++...|+.++|+..++++.+..|+. ..+..+..++...|..++|+..
T Consensus 94 ~~~g~~~eA~~~l~~~l~~~P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~P~~~~~~~~la~~l~~~~~~e~Al~~ 172 (765)
T PRK10049 94 ADAGQYDEALVKAKQLVSGAPDKAN-LLALAYVYKRAGRHWDELRAMTQALPRAPQTQQYPTEYVQALRNNRLSAPALGA 172 (765)
T ss_pred HHCCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHH
Confidence 666666666666666522 2 233 5555556666666666666666666655533 2334455555556666666666
Q ss_pred HhhcCCCChh--------HHHHHHHHHHHcCChhHHHHHHHHhHHCCCCCCHHHHHHHHHHHhccchh---HHHHHHHHH
Q 007573 261 FERIQPKDCV--------SFNAMIAGYAQNGVAEEALRLFSGMIKMDMQPDDATLVSVFTACSALQLL---NEGRQSHVL 329 (597)
Q Consensus 261 ~~~~~~~~~~--------~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~---~~a~~~~~~ 329 (597)
++.... ++. ....++......+. ...+++ +.|...++.
T Consensus 173 l~~~~~-~p~~~~~l~~~~~~~~~r~~~~~~~------------------------------~~~~r~~~ad~Al~~~~~ 221 (765)
T PRK10049 173 IDDANL-TPAEKRDLEADAAAELVRLSFMPTR------------------------------SEKERYAIADRALAQYDA 221 (765)
T ss_pred HHhCCC-CHHHHHHHHHHHHHHHHHhhccccc------------------------------ChhHHHHHHHHHHHHHHH
Confidence 655544 211 11111111111000 011111 334444444
Q ss_pred HHHh-CCCCccc-HH-H---HHHHHHHhcCCHHHHHHHHhccCCCC---hh-hHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 007573 330 VIRN-GFEANVS-VC-N---AVITMYSRCGGILDSELAFRQIHSPN---LV-SWNTIIAAFAQHGHYEKALIFFSQMGLN 399 (597)
Q Consensus 330 ~~~~-~~~~~~~-~~-~---~l~~~~~~~g~~~~A~~~~~~~~~~~---~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~ 399 (597)
+.+. ...|+.. .+ . ..+..+...|++++|+..|+.+...+ +. .-..+...|...|++++|+..|+++.+.
T Consensus 222 ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~a~~~la~~yl~~g~~e~A~~~l~~~l~~ 301 (765)
T PRK10049 222 LEALWHDNPDATADYQRARIDRLGALLARDRYKDVISEYQRLKAEGQIIPPWAQRWVASAYLKLHQPEKAQSILTELFYH 301 (765)
T ss_pred HHhhcccCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhc
Confidence 4432 1111111 00 0 00122334466666666666665211 11 1112345666677777777777766543
Q ss_pred CCCC---ChHHHHHHHHHHhccCcHHHHHHHHHHhHHhcC----------CCCC---hHHHHHHHHHHhhcCCHHHHHHH
Q 007573 400 GFDP---DGITFLSLLSACGHAGKVNESMDLFELMVKVYG----------IIPS---SEHYTCLVDILSRAGQLEKAWQI 463 (597)
Q Consensus 400 g~~p---~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~----------~~p~---~~~~~~l~~~~~~~g~~~~A~~~ 463 (597)
.... .......+..++...|++++|.++++.+..... -.|+ ...+..++.++...|++++|+++
T Consensus 302 ~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~ 381 (765)
T PRK10049 302 PETIADLSDEELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMR 381 (765)
T ss_pred CCCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 2110 123344455566667777777777776654310 0122 12344566667777777777777
Q ss_pred HhhCC-CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCcHHHHHHHHHHHhC
Q 007573 464 TQGMP-FEA-DTGVWGSLLAACVINLNVELGELAAKKMRELDPQNSAVYVMLSNLYAAAGMWRDVTRVRLLMKEQ 536 (597)
Q Consensus 464 ~~~~~-~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 536 (597)
++++. ..| +...+..++..+...|++++|++.++++++++|+++..+..++..+...|++++|.++++.+.+.
T Consensus 382 l~~al~~~P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~~ 456 (765)
T PRK10049 382 ARELAYNAPGNQGLRIDYASVLQARGWPRAAENELKKAEVLEPRNINLEVEQAWTALDLQEWRQMDVLTDDVVAR 456 (765)
T ss_pred HHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHh
Confidence 77655 333 45567777777777777777777777777777777777777777777777777777777777654
No 19
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.86 E-value=1.6e-17 Score=178.49 Aligned_cols=387 Identities=9% Similarity=-0.010 Sum_probs=268.1
Q ss_pred HHHHHHHHHhCCChhHHHHHHhhCCC-C--CcchHHHHHHHHHcCCChHHHHHHHccCC---CCChhhHHHHHHHHHcCC
Q 007573 84 WNAIITGYWQNGFLQESKNLFQSMPV-K--NIVSWNCMIAGCIDNDRIDDAFDYFQAMP---ERNTATYNAMISGFLKHG 157 (597)
Q Consensus 84 ~~~li~~~~~~g~~~~A~~~~~~~~~-~--~~~~~~~ll~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~g 157 (597)
..-.+......|+.++|++++.+... . +...+..+..++.+.|++++|..++++.. +.++..+..++.++...|
T Consensus 18 ~~d~~~ia~~~g~~~~A~~~~~~~~~~~~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~l~~~g 97 (765)
T PRK10049 18 IADWLQIALWAGQDAEVITVYNRYRVHMQLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLEPQNDDYQRGLILTLADAG 97 (765)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCC
Confidence 34455667789999999999999875 2 44568999999999999999999999965 556778888999999999
Q ss_pred ChHHHHHHHccCCC--C-CchhHHHHHHHHHhCCChhHHHHHHHhccc--C-CcchHHHHHHHHHcCCChHHHHHHHhhc
Q 007573 158 RLEEATRLFEQMPR--R-NVISYTAMLDGFMKKGEVDKARALSDYMSF--K-NVVSWTVMITGYVKNERFCEARELFYRM 231 (597)
Q Consensus 158 ~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~--~-~~~~~~~ll~~~~~~g~~~~a~~~~~~~ 231 (597)
++++|...+++..+ | +.. +..+...+...|+.++|+..++++.. | +...+..+..++...|..++|++.++.+
T Consensus 98 ~~~eA~~~l~~~l~~~P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~P~~~~~~~~la~~l~~~~~~e~Al~~l~~~ 176 (765)
T PRK10049 98 QYDEALVKAKQLVSGAPDKAN-LLALAYVYKRAGRHWDELRAMTQALPRAPQTQQYPTEYVQALRNNRLSAPALGAIDDA 176 (765)
T ss_pred CHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHhC
Confidence 99999999998864 3 455 88889999999999999999999943 4 4456667788888899999999999988
Q ss_pred CCCCCCch------HHHHHHHHHH-----hcCCH---HHHHHHHhhcCC---CChhH---H----HHHHHHHHHcCChhH
Q 007573 232 PDYDKNVF------VVTAMITGFC-----KVGML---ENARLLFERIQP---KDCVS---F----NAMIAGYAQNGVAEE 287 (597)
Q Consensus 232 ~~~~~~~~------~~~~l~~~~~-----~~g~~---~~A~~~~~~~~~---~~~~~---~----~~li~~~~~~g~~~~ 287 (597)
.. .|+.. ....++.... ..+++ ++|+..++.+.+ .++.. + ...+..+...|++++
T Consensus 177 ~~-~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~g~~~e 255 (765)
T PRK10049 177 NL-TPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRARIDRLGALLARDRYKD 255 (765)
T ss_pred CC-CHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHHHhhhHHH
Confidence 76 44420 1111122111 11122 445544444431 11110 0 011223344455555
Q ss_pred HHHHHHHhHHCCCC-CCHHHHHHHHHHHhccchhHHHHHHHHHHHHhCCCCcccHHHHHHHHHHhcCCHHHHHHHHhccC
Q 007573 288 ALRLFSGMIKMDMQ-PDDATLVSVFTACSALQLLNEGRQSHVLVIRNGFEANVSVCNAVITMYSRCGGILDSELAFRQIH 366 (597)
Q Consensus 288 A~~~~~~m~~~g~~-p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 366 (597)
|+..|+++.+.+.. |+.. ...+...|...|++++|+..|+++.
T Consensus 256 A~~~~~~ll~~~~~~P~~a------------------------------------~~~la~~yl~~g~~e~A~~~l~~~l 299 (765)
T PRK10049 256 VISEYQRLKAEGQIIPPWA------------------------------------QRWVASAYLKLHQPEKAQSILTELF 299 (765)
T ss_pred HHHHHHHhhccCCCCCHHH------------------------------------HHHHHHHHHhcCCcHHHHHHHHHHh
Confidence 66555555554321 2211 1112445555555555555555543
Q ss_pred C--CC-----hhhHHHHHHHHHHcCCHHHHHHHHHHHHHCC-----------CCCCh---HHHHHHHHHHhccCcHHHHH
Q 007573 367 S--PN-----LVSWNTIIAAFAQHGHYEKALIFFSQMGLNG-----------FDPDG---ITFLSLLSACGHAGKVNESM 425 (597)
Q Consensus 367 ~--~~-----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-----------~~p~~---~~~~~ll~~~~~~g~~~~a~ 425 (597)
. |. ......+..++...|++++|..+++++.... -.|+. ..+..+...+...|++++|+
T Consensus 300 ~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~ 379 (765)
T PRK10049 300 YHPETIADLSDEELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAE 379 (765)
T ss_pred hcCCCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHH
Confidence 1 11 1234445556677777777777777776542 12332 24556667888899999999
Q ss_pred HHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHhhCC-CCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 007573 426 DLFELMVKVYGIIPSSEHYTCLVDILSRAGQLEKAWQITQGMP-FEAD-TGVWGSLLAACVINLNVELGELAAKKMRELD 503 (597)
Q Consensus 426 ~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 503 (597)
++++++... .+.+...+..++.++...|++++|++.+++.. ..|+ ...+..++..+...|++++|+.+++++++..
T Consensus 380 ~~l~~al~~--~P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~~~ 457 (765)
T PRK10049 380 MRARELAYN--APGNQGLRIDYASVLQARGWPRAAENELKKAEVLEPRNINLEVEQAWTALDLQEWRQMDVLTDDVVARE 457 (765)
T ss_pred HHHHHHHHh--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC
Confidence 999998763 34457888999999999999999999999876 5675 5577777788999999999999999999999
Q ss_pred CCCCchH
Q 007573 504 PQNSAVY 510 (597)
Q Consensus 504 p~~~~~~ 510 (597)
|+++.+.
T Consensus 458 Pd~~~~~ 464 (765)
T PRK10049 458 PQDPGVQ 464 (765)
T ss_pred CCCHHHH
Confidence 9987543
No 20
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.86 E-value=4.2e-18 Score=179.64 Aligned_cols=251 Identities=10% Similarity=0.061 Sum_probs=181.5
Q ss_pred cCCHHHHHHHHhhcCC------CChhHHHHHHHHHHHcCChhHHHHHHHHhHHCCCCCC-HHHHHHHHHHHhccchhHHH
Q 007573 251 VGMLENARLLFERIQP------KDCVSFNAMIAGYAQNGVAEEALRLFSGMIKMDMQPD-DATLVSVFTACSALQLLNEG 323 (597)
Q Consensus 251 ~g~~~~A~~~~~~~~~------~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~~~~~~a 323 (597)
.+++++|.+.|+.... .....|+.+...+...|++++|+..|++..+. .|+ ...|..+...+...|++++|
T Consensus 307 ~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l--~P~~~~~~~~la~~~~~~g~~~eA 384 (615)
T TIGR00990 307 DESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIEL--DPRVTQSYIKRASMNLELGDPDKA 384 (615)
T ss_pred hhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCcHHHHHHHHHHHHHCCCHHHH
Confidence 3556666666665542 13345666667777777777777777776654 343 33555666666677777777
Q ss_pred HHHHHHHHHhCCCCcccHHHHHHHHHHhcCCHHHHHHHHhccC---CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCC
Q 007573 324 RQSHVLVIRNGFEANVSVCNAVITMYSRCGGILDSELAFRQIH---SPNLVSWNTIIAAFAQHGHYEKALIFFSQMGLNG 400 (597)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 400 (597)
...++.+++.. +.+..++..+...+...|++++|...|++.. +.+...+..+...+.+.|++++|+..|++..+..
T Consensus 385 ~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~ 463 (615)
T TIGR00990 385 EEDFDKALKLN-SEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPDFIFSHIQLGVTQYKEGSIASSMATFRRCKKNF 463 (615)
T ss_pred HHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 77777776654 4456777788888888889999888888776 4456677788888999999999999999988642
Q ss_pred CCCChHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCC-hH-------HHHHHHHHHhhcCCHHHHHHHHhhCC-CCC
Q 007573 401 FDPDGITFLSLLSACGHAGKVNESMDLFELMVKVYGIIPS-SE-------HYTCLVDILSRAGQLEKAWQITQGMP-FEA 471 (597)
Q Consensus 401 ~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~-~~-------~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p 471 (597)
+.+...+..+...+...|++++|.+.|+...+. .|+ .. .++.....+...|++++|.+++++.. ..|
T Consensus 464 -P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l---~p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~l~p 539 (615)
T TIGR00990 464 -PEAPDVYNYYGELLLDQNKFDEAIEKFDTAIEL---EKETKPMYMNVLPLINKALALFQWKQDFIEAENLCEKALIIDP 539 (615)
T ss_pred -CCChHHHHHHHHHHHHccCHHHHHHHHHHHHhc---CCccccccccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCC
Confidence 334677888888999999999999999988753 232 11 12222233445699999999998854 556
Q ss_pred C-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCc
Q 007573 472 D-TGVWGSLLAACVINLNVELGELAAKKMRELDPQNSA 508 (597)
Q Consensus 472 ~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~ 508 (597)
+ ...+..++..+...|++++|+..++++.++.+....
T Consensus 540 ~~~~a~~~la~~~~~~g~~~eAi~~~e~A~~l~~~~~e 577 (615)
T TIGR00990 540 ECDIAVATMAQLLLQQGDVDEALKLFERAAELARTEGE 577 (615)
T ss_pred CcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHhccHHH
Confidence 5 457888999999999999999999999998776433
No 21
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.86 E-value=1.2e-18 Score=174.71 Aligned_cols=289 Identities=11% Similarity=0.072 Sum_probs=225.5
Q ss_pred HHHHHHhCCChhHHHHHHHhcccC---CcchHHHHHHHHHcCCChHHHHHHHhhcCCCCCC-----chHHHHHHHHHHhc
Q 007573 180 MLDGFMKKGEVDKARALSDYMSFK---NVVSWTVMITGYVKNERFCEARELFYRMPDYDKN-----VFVVTAMITGFCKV 251 (597)
Q Consensus 180 li~~~~~~g~~~~A~~~~~~m~~~---~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~-----~~~~~~l~~~~~~~ 251 (597)
....+...|++++|+..|.++... +..++..+...+...|++++|..+++.+....+. ..++..++..|.+.
T Consensus 41 ~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~ 120 (389)
T PRK11788 41 KGLNFLLNEQPDKAIDLFIEMLKVDPETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKA 120 (389)
T ss_pred HHHHHHhcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHC
Confidence 345567889999999999999543 4457888999999999999999999998874321 24578889999999
Q ss_pred CCHHHHHHHHhhcCC---CChhHHHHHHHHHHHcCChhHHHHHHHHhHHCCCCCCHHHHHHHHHHHhccchhHHHHHHHH
Q 007573 252 GMLENARLLFERIQP---KDCVSFNAMIAGYAQNGVAEEALRLFSGMIKMDMQPDDATLVSVFTACSALQLLNEGRQSHV 328 (597)
Q Consensus 252 g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~ 328 (597)
|++++|..+|+++.+ .+..+++.++..+.+.|++++|++.++.+.+.+..+.....
T Consensus 121 g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~--------------------- 179 (389)
T PRK11788 121 GLLDRAEELFLQLVDEGDFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEI--------------------- 179 (389)
T ss_pred CCHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHH---------------------
Confidence 999999999999865 46678999999999999999999999999886533322110
Q ss_pred HHHHhCCCCcccHHHHHHHHHHhcCCHHHHHHHHhccC---CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCh
Q 007573 329 LVIRNGFEANVSVCNAVITMYSRCGGILDSELAFRQIH---SPNLVSWNTIIAAFAQHGHYEKALIFFSQMGLNGFDPDG 405 (597)
Q Consensus 329 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~ 405 (597)
...+..+...+.+.|++++|...|+++. +.+...+..+...+.+.|++++|.++++++.+.+.....
T Consensus 180 ----------~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~ 249 (389)
T PRK11788 180 ----------AHFYCELAQQALARGDLDAARALLKKALAADPQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLS 249 (389)
T ss_pred ----------HHHHHHHHHHHHhCCCHHHHHHHHHHHHhHCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHH
Confidence 0112334555666667777776666654 234556777888889999999999999998875322224
Q ss_pred HHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHhhCC-CCCCHHHHHHHHHHHH
Q 007573 406 ITFLSLLSACGHAGKVNESMDLFELMVKVYGIIPSSEHYTCLVDILSRAGQLEKAWQITQGMP-FEADTGVWGSLLAACV 484 (597)
Q Consensus 406 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p~~~~~~~l~~~~~ 484 (597)
.++..+..++...|++++|.+.++.+.+. .|+...+..++..+.+.|++++|.++++++. ..|+...+..++..+.
T Consensus 250 ~~~~~l~~~~~~~g~~~~A~~~l~~~~~~---~p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~~P~~~~~~~l~~~~~ 326 (389)
T PRK11788 250 EVLPKLMECYQALGDEAEGLEFLRRALEE---YPGADLLLALAQLLEEQEGPEAAQALLREQLRRHPSLRGFHRLLDYHL 326 (389)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCchHHHHHHHHHHHhCCHHHHHHHHHHHHHhCcCHHHHHHHHHHhh
Confidence 56788889999999999999999998764 4676677889999999999999999998765 6788888888887766
Q ss_pred h---cCCHHHHHHHHHHHHhc
Q 007573 485 I---NLNVELGELAAKKMREL 502 (597)
Q Consensus 485 ~---~g~~~~a~~~~~~~~~~ 502 (597)
. .|+.+++...++++++.
T Consensus 327 ~~~~~g~~~~a~~~~~~~~~~ 347 (389)
T PRK11788 327 AEAEEGRAKESLLLLRDLVGE 347 (389)
T ss_pred hccCCccchhHHHHHHHHHHH
Confidence 4 55888999988888863
No 22
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.85 E-value=1e-17 Score=175.94 Aligned_cols=346 Identities=10% Similarity=-0.046 Sum_probs=277.5
Q ss_pred HhCCChhHHHHHHHhccc------CCcchHHHHHHHHHcCCChHHHHHHHhhcCCCCCC-chHHHHHHHHHHhcCCHHHH
Q 007573 185 MKKGEVDKARALSDYMSF------KNVVSWTVMITGYVKNERFCEARELFYRMPDYDKN-VFVVTAMITGFCKVGMLENA 257 (597)
Q Consensus 185 ~~~g~~~~A~~~~~~m~~------~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A 257 (597)
.++.+++.-.-+|....+ .+......++..+.+.|++++|+.+++......|+ ......++.+....|++++|
T Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~l~~~~l~~~p~~~~~l~~l~~~~l~~g~~~~A 95 (656)
T PRK15174 16 LKQEDWEGLCLYFSQHPEKVRDSAGNEQNIILFAIACLRKDETDVGLTLLSDRVLTAKNGRDLLRRWVISPLASSQPDAV 95 (656)
T ss_pred hhhhchhhHhHHhhcccHhhhhhcccccCHHHHHHHHHhcCCcchhHHHhHHHHHhCCCchhHHHHHhhhHhhcCCHHHH
Confidence 455566655555544421 13345566778889999999999999999886664 44666777778889999999
Q ss_pred HHHHhhcCC---CChhHHHHHHHHHHHcCChhHHHHHHHHhHHCCCCCC-HHHHHHHHHHHhccchhHHHHHHHHHHHHh
Q 007573 258 RLLFERIQP---KDCVSFNAMIAGYAQNGVAEEALRLFSGMIKMDMQPD-DATLVSVFTACSALQLLNEGRQSHVLVIRN 333 (597)
Q Consensus 258 ~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 333 (597)
...++++.. .+...|..+...+...|++++|+..++++.+. .|+ ...+..+...+...|+.++|...+..+...
T Consensus 96 ~~~l~~~l~~~P~~~~a~~~la~~l~~~g~~~~Ai~~l~~Al~l--~P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~ 173 (656)
T PRK15174 96 LQVVNKLLAVNVCQPEDVLLVASVLLKSKQYATVADLAEQAWLA--FSGNSQIFALHLRTLVLMDKELQAISLARTQAQE 173 (656)
T ss_pred HHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHh
Confidence 999999754 46678999999999999999999999999875 454 556777888899999999999999988776
Q ss_pred CCCCcccHHHHHHHHHHhcCCHHHHHHHHhccCCC----ChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCChHHHH
Q 007573 334 GFEANVSVCNAVITMYSRCGGILDSELAFRQIHSP----NLVSWNTIIAAFAQHGHYEKALIFFSQMGLNGFDPDGITFL 409 (597)
Q Consensus 334 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~ 409 (597)
... +...+..+ ..+...|++++|...++.+.+. +...+..+...+...|++++|+..++++.+.. +.+...+.
T Consensus 174 ~P~-~~~a~~~~-~~l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~-p~~~~~~~ 250 (656)
T PRK15174 174 VPP-RGDMIATC-LSFLNKSRLPEDHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARG-LDGAALRR 250 (656)
T ss_pred CCC-CHHHHHHH-HHHHHcCCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHH
Confidence 533 33344333 3478899999999999987632 23344555678889999999999999999764 34466778
Q ss_pred HHHHHHhccCcHHH----HHHHHHHhHHhcCCCC-ChHHHHHHHHHHhhcCCHHHHHHHHhhCC-CCCC-HHHHHHHHHH
Q 007573 410 SLLSACGHAGKVNE----SMDLFELMVKVYGIIP-SSEHYTCLVDILSRAGQLEKAWQITQGMP-FEAD-TGVWGSLLAA 482 (597)
Q Consensus 410 ~ll~~~~~~g~~~~----a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p~-~~~~~~l~~~ 482 (597)
.+...+...|++++ |...|+.+.+. .| +...+..+..++.+.|++++|...+++.. ..|+ ...+..+..+
T Consensus 251 ~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l---~P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~~~~a~~~La~~ 327 (656)
T PRK15174 251 SLGLAYYQSGRSREAKLQAAEHWRHALQF---NSDNVRIVTLYADALIRTGQNEKAIPLLQQSLATHPDLPYVRAMYARA 327 (656)
T ss_pred HHHHHHHHcCCchhhHHHHHHHHHHHHhh---CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 88899999999986 89999988753 44 47789999999999999999999999876 5564 5577888899
Q ss_pred HHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCcHHHHHHHHHHHhCCC
Q 007573 483 CVINLNVELGELAAKKMRELDPQNSAVYVMLSNLYAAAGMWRDVTRVRLLMKEQGV 538 (597)
Q Consensus 483 ~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 538 (597)
+...|++++|+..++++++.+|.++..+..++.++...|++++|.+.+++..+...
T Consensus 328 l~~~G~~~eA~~~l~~al~~~P~~~~~~~~~a~al~~~G~~deA~~~l~~al~~~P 383 (656)
T PRK15174 328 LRQVGQYTAASDEFVQLAREKGVTSKWNRYAAAALLQAGKTSEAESVFEHYIQARA 383 (656)
T ss_pred HHHCCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCh
Confidence 99999999999999999999999887777789999999999999999999887654
No 23
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.84 E-value=3.4e-17 Score=164.65 Aligned_cols=473 Identities=13% Similarity=0.116 Sum_probs=268.3
Q ss_pred hcCChHHHHHHHhhcCC--CCcc--hHHHHHHHHHhCCChhHHHHHHhhCCCCCcchHHHHHHHHH------cCCChHHH
Q 007573 62 RAGKISAARQLFDQMTT--KDVI--TWNAIITGYWQNGFLQESKNLFQSMPVKNIVSWNCMIAGCI------DNDRIDDA 131 (597)
Q Consensus 62 ~~g~~~~A~~~~~~~~~--~~~~--~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ll~~~~------~~~~~~~A 131 (597)
..|++..|..+|..... |... ..-.+..++++.|+.+.|+..|.+..+.|+....+++.... ....+..+
T Consensus 176 nkkdY~~al~yyk~al~inp~~~aD~rIgig~Cf~kl~~~~~a~~a~~ralqLdp~~v~alv~L~~~~l~~~d~~s~~~~ 255 (1018)
T KOG2002|consen 176 NKKDYRGALKYYKKALRINPACKADVRIGIGHCFWKLGMSEKALLAFERALQLDPTCVSALVALGEVDLNFNDSDSYKKG 255 (1018)
T ss_pred ccccHHHHHHHHHHHHhcCcccCCCccchhhhHHHhccchhhHHHHHHHHHhcChhhHHHHHHHHHHHHHccchHHHHHH
Confidence 45778888888877533 2111 12223355567777777777777777655544443333211 12234445
Q ss_pred HHHHccCC---CCChhhHHHHHHHHHcCCChHHHHHHHccCCCCC------chhHHHHHHHHHhCCChhHHHHHHHhccc
Q 007573 132 FDYFQAMP---ERNTATYNAMISGFLKHGRLEEATRLFEQMPRRN------VISYTAMLDGFMKKGEVDKARALSDYMSF 202 (597)
Q Consensus 132 ~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~------~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 202 (597)
..++...- ..||.+.+.|.+.|.-.|+++.+..+...+...+ ..+|-.+.++|-..|++++|...|-+...
T Consensus 256 ~~ll~~ay~~n~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k 335 (1018)
T KOG2002|consen 256 VQLLQRAYKENNENPVALNHLANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLK 335 (1018)
T ss_pred HHHHHHHHhhcCCCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHc
Confidence 55554443 4466666666666666677776666666554321 22455666666677777777666665533
Q ss_pred C--Cc--chHHHHHHHHHcCCChHHHHHHHhhcCCCCCC-chHHHHHHHHHHhcC----CHHHHHHHHhhcCCC---Chh
Q 007573 203 K--NV--VSWTVMITGYVKNERFCEARELFYRMPDYDKN-VFVVTAMITGFCKVG----MLENARLLFERIQPK---DCV 270 (597)
Q Consensus 203 ~--~~--~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~-~~~~~~l~~~~~~~g----~~~~A~~~~~~~~~~---~~~ 270 (597)
. |. ..+.-+...+...|+++.+...|+.+.+..|+ ..+...|...|...+ ..+.|..++.+..++ |..
T Consensus 336 ~~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~~~d~~ 415 (1018)
T KOG2002|consen 336 ADNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQLPNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQTPVDSE 415 (1018)
T ss_pred cCCCCccccccchhHHHHHhchHHHHHHHHHHHHHhCcchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcccccHH
Confidence 2 22 23344556666666666666666666654443 334444445554443 334444444443332 333
Q ss_pred HH--------------------------------------HHHHHHHHHcCChhHHHHHHHHhHHC---CCCCCHH----
Q 007573 271 SF--------------------------------------NAMIAGYAQNGVAEEALRLFSGMIKM---DMQPDDA---- 305 (597)
Q Consensus 271 ~~--------------------------------------~~li~~~~~~g~~~~A~~~~~~m~~~---g~~p~~~---- 305 (597)
.| |.+.......|.+++|...|...... ...+|..
T Consensus 416 a~l~laql~e~~d~~~sL~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~ 495 (1018)
T KOG2002|consen 416 AWLELAQLLEQTDPWASLDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTN 495 (1018)
T ss_pred HHHHHHHHHHhcChHHHHHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccch
Confidence 34 44444444444444444444444332 1122221
Q ss_pred -HHH-HHHHHHhccchhHHHHHHHHHHHHhCCCCcccHHHHHHHHHHhcCCHHHHHHHHhccC---CCChhhHHHHHHHH
Q 007573 306 -TLV-SVFTACSALQLLNEGRQSHVLVIRNGFEANVSVCNAVITMYSRCGGILDSELAFRQIH---SPNLVSWNTIIAAF 380 (597)
Q Consensus 306 -~~~-~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~ 380 (597)
|.. .+....-..++.+.|.+.+..+++.. +.-+..|-.+..+....+...+|...++.+. ..++..|+.+...+
T Consensus 496 lt~~YNlarl~E~l~~~~~A~e~Yk~Ilkeh-p~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d~~np~arsl~G~~~ 574 (1018)
T KOG2002|consen 496 LTLKYNLARLLEELHDTEVAEEMYKSILKEH-PGYIDAYLRLGCMARDKNNLYEASLLLKDALNIDSSNPNARSLLGNLH 574 (1018)
T ss_pred hHHHHHHHHHHHhhhhhhHHHHHHHHHHHHC-chhHHHHHHhhHHHHhccCcHHHHHHHHHHHhcccCCcHHHHHHHHHH
Confidence 111 11122223344444444444444432 1111122222222222234445555555444 34555666666666
Q ss_pred HHcCCHHHHHHHHHHHHHCC-CCCChHHHHHHHHHHhc------------cCcHHHHHHHHHHhHHhcCCCCChHHHHHH
Q 007573 381 AQHGHYEKALIFFSQMGLNG-FDPDGITFLSLLSACGH------------AGKVNESMDLFELMVKVYGIIPSSEHYTCL 447 (597)
Q Consensus 381 ~~~g~~~~A~~~~~~m~~~g-~~p~~~~~~~ll~~~~~------------~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l 447 (597)
.....+..|.+-|....+.- ..+|..+...|.+.|.. .+..+.|.++|.++.+ .-+-+...-+.+
T Consensus 575 l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~--~dpkN~yAANGI 652 (1018)
T KOG2002|consen 575 LKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLR--NDPKNMYAANGI 652 (1018)
T ss_pred HhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHh--cCcchhhhccch
Confidence 66666666666555544321 23566666666665532 2345677777777765 334456667778
Q ss_pred HHHHhhcCCHHHHHHHHhhCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc-CCC-CCchHHHHHHHHHhcCCc
Q 007573 448 VDILSRAGQLEKAWQITQGMP--FEADTGVWGSLLAACVINLNVELGELAAKKMREL-DPQ-NSAVYVMLSNLYAAAGMW 523 (597)
Q Consensus 448 ~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-~p~-~~~~~~~l~~~~~~~g~~ 523 (597)
.-.++..|++.+|..+|.+.. ......+|..+..+|...|++-.|+++|+..++. .+. ++.+...|+.++.+.|.+
T Consensus 653 giVLA~kg~~~~A~dIFsqVrEa~~~~~dv~lNlah~~~e~~qy~~AIqmYe~~lkkf~~~~~~~vl~~Lara~y~~~~~ 732 (1018)
T KOG2002|consen 653 GIVLAEKGRFSEARDIFSQVREATSDFEDVWLNLAHCYVEQGQYRLAIQMYENCLKKFYKKNRSEVLHYLARAWYEAGKL 732 (1018)
T ss_pred hhhhhhccCchHHHHHHHHHHHHHhhCCceeeeHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhhhH
Confidence 888899999999999998876 2335678889999999999999999999998864 344 478888999999999999
Q ss_pred HHHHHHHHHHHhCC
Q 007573 524 RDVTRVRLLMKEQG 537 (597)
Q Consensus 524 ~~A~~~~~~~~~~~ 537 (597)
.+|.+.........
T Consensus 733 ~eak~~ll~a~~~~ 746 (1018)
T KOG2002|consen 733 QEAKEALLKARHLA 746 (1018)
T ss_pred HHHHHHHHHHHHhC
Confidence 99999887776544
No 24
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.83 E-value=2.7e-16 Score=165.57 Aligned_cols=418 Identities=10% Similarity=0.017 Sum_probs=299.7
Q ss_pred HHHhCCChhHHHHHHhhCCCCCcc---hHHHHHHHHHcCCChHHHHHHHccCCCCChh-hHHHH--HHHHHcCCChHHHH
Q 007573 90 GYWQNGFLQESKNLFQSMPVKNIV---SWNCMIAGCIDNDRIDDAFDYFQAMPERNTA-TYNAM--ISGFLKHGRLEEAT 163 (597)
Q Consensus 90 ~~~~~g~~~~A~~~~~~~~~~~~~---~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~l--~~~~~~~g~~~~A~ 163 (597)
...+.|+++.|+..|++..+.++. ....++..+...|+.++|...+++...|+.. .+..+ ...|...|++++|+
T Consensus 43 i~~r~Gd~~~Al~~L~qaL~~~P~~~~av~dll~l~~~~G~~~~A~~~~eka~~p~n~~~~~llalA~ly~~~gdyd~Ai 122 (822)
T PRK14574 43 IRARAGDTAPVLDYLQEESKAGPLQSGQVDDWLQIAGWAGRDQEVIDVYERYQSSMNISSRGLASAARAYRNEKRWDQAL 122 (822)
T ss_pred HHHhCCCHHHHHHHHHHHHhhCccchhhHHHHHHHHHHcCCcHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHH
Confidence 356899999999999999865333 2448888888999999999999999866443 33333 56888889999999
Q ss_pred HHHccCCC---CCchhHHHHHHHHHhCCChhHHHHHHHhcccCCc--chHHHHHHHHHcCCChHHHHHHHhhcCCCCCC-
Q 007573 164 RLFEQMPR---RNVISYTAMLDGFMKKGEVDKARALSDYMSFKNV--VSWTVMITGYVKNERFCEARELFYRMPDYDKN- 237 (597)
Q Consensus 164 ~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~--~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~- 237 (597)
++|+++.+ .++..+..++..+...++.++|++.++++.+.+. ..+..++..+...++..+|++.++++.+..|+
T Consensus 123 ely~kaL~~dP~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~dp~~~~~l~layL~~~~~~~~~AL~~~ekll~~~P~n 202 (822)
T PRK14574 123 ALWQSSLKKDPTNPDLISGMIMTQADAGRGGVVLKQATELAERDPTVQNYMTLSYLNRATDRNYDALQASSEAVRLAPTS 202 (822)
T ss_pred HHHHHHHhhCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHhcccCcchHHHHHHHHHHHhcchHHHHHHHHHHHHHhCCCC
Confidence 99999975 2456677888999999999999999999966544 34433333444466666699999999998774
Q ss_pred chHHHHHHHHHHhcCCHHHHHHHHhhcCCC-ChhHHHH----HHHHHHHcC---------C---hhHHHHHHHHhHHC-C
Q 007573 238 VFVVTAMITGFCKVGMLENARLLFERIQPK-DCVSFNA----MIAGYAQNG---------V---AEEALRLFSGMIKM-D 299 (597)
Q Consensus 238 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~----li~~~~~~g---------~---~~~A~~~~~~m~~~-g 299 (597)
...+..+...+.+.|-...|.++..+-+.- +...+.. .+.-..+.+ + .+.|+.-++.+... +
T Consensus 203 ~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~~~d~ala~~~~l~~~~~ 282 (822)
T PRK14574 203 EEVLKNHLEILQRNRIVEPALRLAKENPNLVSAEHYRQLERDAAAEQVRMAVLPTRSETERFDIADKALADYQNLLTRWG 282 (822)
T ss_pred HHHHHHHHHHHHHcCCcHHHHHHHHhCccccCHHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHHHHhhcc
Confidence 567788889999999999999988876531 1111111 111122111 2 34455556665542 2
Q ss_pred CCCCH-HH----HHHHHHHHhccchhHHHHHHHHHHHHhCCCCcccHHHHHHHHHHhcCCHHHHHHHHhccCCC------
Q 007573 300 MQPDD-AT----LVSVFTACSALQLLNEGRQSHVLVIRNGFEANVSVCNAVITMYSRCGGILDSELAFRQIHSP------ 368 (597)
Q Consensus 300 ~~p~~-~~----~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~------ 368 (597)
-.|.. .. ..--+-++...++..++...++.+...+.+....+-.++.++|...+++++|+.+++.+...
T Consensus 283 ~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~~~~~~~~~~~~~ 362 (822)
T PRK14574 283 KDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAAPILSSLYYSDGKTFR 362 (822)
T ss_pred CCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhccccccC
Confidence 22322 22 22345566778888888888888888887666678888888888888899988888877421
Q ss_pred ---ChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCC-----------CCC--h-HHHHHHHHHHhccCcHHHHHHHHHHh
Q 007573 369 ---NLVSWNTIIAAFAQHGHYEKALIFFSQMGLNGF-----------DPD--G-ITFLSLLSACGHAGKVNESMDLFELM 431 (597)
Q Consensus 369 ---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-----------~p~--~-~~~~~ll~~~~~~g~~~~a~~~~~~~ 431 (597)
+......|.-+|...+++++|..+++++.+... .|| - ..+..++..+...|++.+|++.++.+
T Consensus 363 ~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~~le~l 442 (822)
T PRK14574 363 NSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALNDLPTAQKKLEDL 442 (822)
T ss_pred CCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 223346677888888888888888888886311 122 2 23344556677888888888888888
Q ss_pred HHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHhhCC-CCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCch
Q 007573 432 VKVYGIIPSSEHYTCLVDILSRAGQLEKAWQITQGMP-FEAD-TGVWGSLLAACVINLNVELGELAAKKMRELDPQNSAV 509 (597)
Q Consensus 432 ~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~ 509 (597)
.. .-+-|......+.+++...|++.+|++.++... ..|+ ..+....+.+....+++++|..+.+.+.+..|+++.+
T Consensus 443 ~~--~aP~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l~P~~~~~~~~~~~~al~l~e~~~A~~~~~~l~~~~Pe~~~~ 520 (822)
T PRK14574 443 SS--TAPANQNLRIALASIYLARDLPRKAEQELKAVESLAPRSLILERAQAETAMALQEWHQMELLTDDVISRSPEDIPS 520 (822)
T ss_pred HH--hCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCccHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhCCCchhH
Confidence 65 334467788888888888888888888887765 4554 4566777777888888888888888888888888643
No 25
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.83 E-value=2e-17 Score=166.37 Aligned_cols=433 Identities=15% Similarity=0.123 Sum_probs=295.7
Q ss_pred CcchHHHHHHHHHhCCChhHHHHHHhhCCCC------CcchHHHHHHHHHcCCChHHHHHHHccCCC--CC--hhhHHHH
Q 007573 80 DVITWNAIITGYWQNGFLQESKNLFQSMPVK------NIVSWNCMIAGCIDNDRIDDAFDYFQAMPE--RN--TATYNAM 149 (597)
Q Consensus 80 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~------~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~--~~--~~~~~~l 149 (597)
|+...+.|.+-|...|++..+..+.+.+... -..+|..+.+++...|++++|..+|.+... ++ ...+--|
T Consensus 269 nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~~~Gl 348 (1018)
T KOG2002|consen 269 NPVALNHLANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKADNDNFVLPLVGL 348 (1018)
T ss_pred CcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCCccccccch
Confidence 3444445555555556666666655555432 123455666666666777777666666552 22 2234445
Q ss_pred HHHHHcCCChHHHHHHHccCCC---CCchhHHHHHHHHHhCC----ChhHHHHHHHhcccC---CcchHHHHHHHHHcCC
Q 007573 150 ISGFLKHGRLEEATRLFEQMPR---RNVISYTAMLDGFMKKG----EVDKARALSDYMSFK---NVVSWTVMITGYVKNE 219 (597)
Q Consensus 150 ~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g----~~~~A~~~~~~m~~~---~~~~~~~ll~~~~~~g 219 (597)
.++|.+.|+++.+...|+.+.. .+..+.-.|...|...+ ..+.|..++.+...+ |...|..+...+....
T Consensus 349 gQm~i~~~dle~s~~~fEkv~k~~p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~~~d~~a~l~laql~e~~d 428 (1018)
T KOG2002|consen 349 GQMYIKRGDLEESKFCFEKVLKQLPNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQTPVDSEAWLELAQLLEQTD 428 (1018)
T ss_pred hHHHHHhchHHHHHHHHHHHHHhCcchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHhcC
Confidence 6666677777777766666643 23344444555555443 345555555555333 4456666666554433
Q ss_pred ChHHHHHHHhhcCC------CCCCchHHHHHHHHHHhcCCHHHHHHHHhhcCCC-------Ch------hHHHHHHHHHH
Q 007573 220 RFCEARELFYRMPD------YDKNVFVVTAMITGFCKVGMLENARLLFERIQPK-------DC------VSFNAMIAGYA 280 (597)
Q Consensus 220 ~~~~a~~~~~~~~~------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-------~~------~~~~~li~~~~ 280 (597)
- ..++..|..+.. ..+.....|.+...+...|++++|...|++.... |. .+-..+...+-
T Consensus 429 ~-~~sL~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E 507 (1018)
T KOG2002|consen 429 P-WASLDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLE 507 (1018)
T ss_pred h-HHHHHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHHH
Confidence 3 333555554432 2256678889999999999999999999876432 22 12334666777
Q ss_pred HcCChhHHHHHHHHhHHCCCCCCHHH-HHHHHHHHhccchhHHHHHHHHHHHHhCCCCcccHHHHHHHHHHhcCCHHHHH
Q 007573 281 QNGVAEEALRLFSGMIKMDMQPDDAT-LVSVFTACSALQLLNEGRQSHVLVIRNGFEANVSVCNAVITMYSRCGGILDSE 359 (597)
Q Consensus 281 ~~g~~~~A~~~~~~m~~~g~~p~~~~-~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 359 (597)
..++++.|.+.|..+.+. .|.-+. |.-+....-..+...+|...+..+...+ ..++.++..+...|.+...+..|.
T Consensus 508 ~l~~~~~A~e~Yk~Ilke--hp~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d-~~np~arsl~G~~~l~k~~~~~a~ 584 (1018)
T KOG2002|consen 508 ELHDTEVAEEMYKSILKE--HPGYIDAYLRLGCMARDKNNLYEASLLLKDALNID-SSNPNARSLLGNLHLKKSEWKPAK 584 (1018)
T ss_pred hhhhhhHHHHHHHHHHHH--CchhHHHHHHhhHHHHhccCcHHHHHHHHHHHhcc-cCCcHHHHHHHHHHHhhhhhcccc
Confidence 788999999999999885 455443 3333322234467778888888887665 667778888888999999998888
Q ss_pred HHHhccC-----CCChhhHHHHHHHHHH------------cCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHhccCcHH
Q 007573 360 LAFRQIH-----SPNLVSWNTIIAAFAQ------------HGHYEKALIFFSQMGLNGFDPDGITFLSLLSACGHAGKVN 422 (597)
Q Consensus 360 ~~~~~~~-----~~~~~~~~~li~~~~~------------~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~ 422 (597)
+-|+.+. .+|..+.-+|...|.+ .+..++|+++|.+..+.. +-|...-+.+.-.++..|++.
T Consensus 585 k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~d-pkN~yAANGIgiVLA~kg~~~ 663 (1018)
T KOG2002|consen 585 KKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLRND-PKNMYAANGIGIVLAEKGRFS 663 (1018)
T ss_pred cHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHhcC-cchhhhccchhhhhhhccCch
Confidence 8665554 3455555555554442 345688999999988753 556778888888999999999
Q ss_pred HHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHhhCC----CCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 007573 423 ESMDLFELMVKVYGIIPSSEHYTCLVDILSRAGQLEKAWQITQGMP----FEADTGVWGSLLAACVINLNVELGELAAKK 498 (597)
Q Consensus 423 ~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~----~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~ 498 (597)
+|..+|.+.++. ..-...+|-.+...|..+|++..|.++|+... .+.+..+...|..++...|.+.+|.+.+..
T Consensus 664 ~A~dIFsqVrEa--~~~~~dv~lNlah~~~e~~qy~~AIqmYe~~lkkf~~~~~~~vl~~Lara~y~~~~~~eak~~ll~ 741 (1018)
T KOG2002|consen 664 EARDIFSQVREA--TSDFEDVWLNLAHCYVEQGQYRLAIQMYENCLKKFYKKNRSEVLHYLARAWYEAGKLQEAKEALLK 741 (1018)
T ss_pred HHHHHHHHHHHH--HhhCCceeeeHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 999999999875 23345678899999999999999999998764 345788999999999999999999999999
Q ss_pred HHhcCCCCCchHHHHHHHHHh
Q 007573 499 MRELDPQNSAVYVMLSNLYAA 519 (597)
Q Consensus 499 ~~~~~p~~~~~~~~l~~~~~~ 519 (597)
++...|.++.....++-+..+
T Consensus 742 a~~~~p~~~~v~FN~a~v~kk 762 (1018)
T KOG2002|consen 742 ARHLAPSNTSVKFNLALVLKK 762 (1018)
T ss_pred HHHhCCccchHHhHHHHHHHH
Confidence 999999999887777766543
No 26
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.83 E-value=2.1e-16 Score=166.42 Aligned_cols=416 Identities=10% Similarity=-0.001 Sum_probs=295.7
Q ss_pred HHHhcCChHHHHHHHhhcCC--CCcc-hHHHHHHHHHhCCChhHHHHHHhhCCCC-CcchHHHH--HHHHHcCCChHHHH
Q 007573 59 ALSRAGKISAARQLFDQMTT--KDVI-TWNAIITGYWQNGFLQESKNLFQSMPVK-NIVSWNCM--IAGCIDNDRIDDAF 132 (597)
Q Consensus 59 ~~~~~g~~~~A~~~~~~~~~--~~~~-~~~~li~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~l--l~~~~~~~~~~~A~ 132 (597)
...+.|+++.|+..|++..+ |+.. ....++..+...|+.++|+..+++...+ +...+..+ ...+...|++++|.
T Consensus 43 i~~r~Gd~~~Al~~L~qaL~~~P~~~~av~dll~l~~~~G~~~~A~~~~eka~~p~n~~~~~llalA~ly~~~gdyd~Ai 122 (822)
T PRK14574 43 IRARAGDTAPVLDYLQEESKAGPLQSGQVDDWLQIAGWAGRDQEVIDVYERYQSSMNISSRGLASAARAYRNEKRWDQAL 122 (822)
T ss_pred HHHhCCCHHHHHHHHHHHHhhCccchhhHHHHHHHHHHcCCcHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHH
Confidence 45689999999999999887 4321 2337888888889999999999999876 44444444 45777889999999
Q ss_pred HHHccCC---CCChhhHHHHHHHHHcCCChHHHHHHHccCCCCCch--hHHHHHHHHHhCCChhHHHHHHHhcc--cC-C
Q 007573 133 DYFQAMP---ERNTATYNAMISGFLKHGRLEEATRLFEQMPRRNVI--SYTAMLDGFMKKGEVDKARALSDYMS--FK-N 204 (597)
Q Consensus 133 ~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~--~~~~li~~~~~~g~~~~A~~~~~~m~--~~-~ 204 (597)
++++.+. +.++..+..++..+...++.++|++.++++...++. .+..++..+...++..+|++.++++. .| +
T Consensus 123 ely~kaL~~dP~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~dp~~~~~l~layL~~~~~~~~~AL~~~ekll~~~P~n 202 (822)
T PRK14574 123 ALWQSSLKKDPTNPDLISGMIMTQADAGRGGVVLKQATELAERDPTVQNYMTLSYLNRATDRNYDALQASSEAVRLAPTS 202 (822)
T ss_pred HHHHHHHhhCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHhcccCcchHHHHHHHHHHHhcchHHHHHHHHHHHHHhCCCC
Confidence 9999988 445677778888899999999999999988764443 34333333333566656999999884 34 4
Q ss_pred cchHHHHHHHHHcCCChHHHHHHHhhcCC-CCCCchHH--HHHHHHHH---------hcCC---HHHHHHHHhhcCC---
Q 007573 205 VVSWTVMITGYVKNERFCEARELFYRMPD-YDKNVFVV--TAMITGFC---------KVGM---LENARLLFERIQP--- 266 (597)
Q Consensus 205 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~-~~~~~~~~--~~l~~~~~---------~~g~---~~~A~~~~~~~~~--- 266 (597)
...+..+..++.+.|-...|.++...-.+ +.+....+ ...+.-.. ...+ .+.|+.-++.+..
T Consensus 203 ~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~~~d~ala~~~~l~~~~~ 282 (822)
T PRK14574 203 EEVLKNHLEILQRNRIVEPALRLAKENPNLVSAEHYRQLERDAAAEQVRMAVLPTRSETERFDIADKALADYQNLLTRWG 282 (822)
T ss_pred HHHHHHHHHHHHHcCCcHHHHHHHHhCccccCHHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHHHHhhcc
Confidence 56678888889999999999988887654 22211111 11111111 1122 2344444444332
Q ss_pred CCh---h----HHHHHHHHHHHcCChhHHHHHHHHhHHCCCCCCHHHHHHHHHHHhccchhHHHHHHHHHHHHhCC----
Q 007573 267 KDC---V----SFNAMIAGYAQNGVAEEALRLFSGMIKMDMQPDDATLVSVFTACSALQLLNEGRQSHVLVIRNGF---- 335 (597)
Q Consensus 267 ~~~---~----~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~---- 335 (597)
+++ . ..--.+-++...|++.++++.|+.+...|.+....+-..+..+|...+.+++|..++..+.....
T Consensus 283 ~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~~~~~~~~~~~~~ 362 (822)
T PRK14574 283 KDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAAPILSSLYYSDGKTFR 362 (822)
T ss_pred CCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhccccccC
Confidence 212 1 22244567788899999999999999888765666788889999999999999999998876531
Q ss_pred -CCcccHHHHHHHHHHhcCCHHHHHHHHhccCC--C-------------Ch---hhHHHHHHHHHHcCCHHHHHHHHHHH
Q 007573 336 -EANVSVCNAVITMYSRCGGILDSELAFRQIHS--P-------------NL---VSWNTIIAAFAQHGHYEKALIFFSQM 396 (597)
Q Consensus 336 -~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~-------------~~---~~~~~li~~~~~~g~~~~A~~~~~~m 396 (597)
+++......|..+|...+++++|..+++.+.. | |. ..+..++..+...|+..+|.+.++++
T Consensus 363 ~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~~le~l 442 (822)
T PRK14574 363 NSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALNDLPTAQKKLEDL 442 (822)
T ss_pred CCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 22344457888999999999999999988762 2 11 13344567788899999999999999
Q ss_pred HHCCCCCChHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCC-hHHHHHHHHHHhhcCCHHHHHHHHhhCC-CCCCHH
Q 007573 397 GLNGFDPDGITFLSLLSACGHAGKVNESMDLFELMVKVYGIIPS-SEHYTCLVDILSRAGQLEKAWQITQGMP-FEADTG 474 (597)
Q Consensus 397 ~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p~~~ 474 (597)
.... +-|......+...+...|.+.+|.+.++.+. .+.|+ ..+....+..+...|++++|.++.+.+. ..|+..
T Consensus 443 ~~~a-P~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~---~l~P~~~~~~~~~~~~al~l~e~~~A~~~~~~l~~~~Pe~~ 518 (822)
T PRK14574 443 SSTA-PANQNLRIALASIYLARDLPRKAEQELKAVE---SLAPRSLILERAQAETAMALQEWHQMELLTDDVISRSPEDI 518 (822)
T ss_pred HHhC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHh---hhCCccHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhCCCch
Confidence 7653 5567788888888999999999999997665 44555 6677778888888999999988887665 445544
Q ss_pred HHHH
Q 007573 475 VWGS 478 (597)
Q Consensus 475 ~~~~ 478 (597)
....
T Consensus 519 ~~~~ 522 (822)
T PRK14574 519 PSQE 522 (822)
T ss_pred hHHH
Confidence 3333
No 27
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.73 E-value=2.4e-15 Score=138.85 Aligned_cols=273 Identities=14% Similarity=0.096 Sum_probs=208.0
Q ss_pred HHHHhcCCHHHHHHHHhhcCCCChhHHH----HHHHH-HHH-cCChhHHHHHHHHhHHCCCCCCHHHHHHHHHHHhccch
Q 007573 246 TGFCKVGMLENARLLFERIQPKDCVSFN----AMIAG-YAQ-NGVAEEALRLFSGMIKMDMQPDDATLVSVFTACSALQL 319 (597)
Q Consensus 246 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~----~li~~-~~~-~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~ 319 (597)
.-|.+.|+++.|.++++-+.++|..+-. .|-.. |.+ ..++..|.+.-+...... .-+....+.--+.....|+
T Consensus 427 ~~~lk~~d~~~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~d-ryn~~a~~nkgn~~f~ngd 505 (840)
T KOG2003|consen 427 GELLKNGDIEGAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNID-RYNAAALTNKGNIAFANGD 505 (840)
T ss_pred HHHHhccCHHHHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhccc-ccCHHHhhcCCceeeecCc
Confidence 3577899999999999888776554322 22222 222 334666666555544322 2233333333333456799
Q ss_pred hHHHHHHHHHHHHhCCCCcccHHHHHHHHHHhcCCHHHHHHHHhccC---CCChhhHHHHHHHHHHcCCHHHHHHHHHHH
Q 007573 320 LNEGRQSHVLVIRNGFEANVSVCNAVITMYSRCGGILDSELAFRQIH---SPNLVSWNTIIAAFAQHGHYEKALIFFSQM 396 (597)
Q Consensus 320 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 396 (597)
+++|...+.+.+...-......|| +.-.+-..|++++|+..|-++. ..+..+...+...|-...+..+|++++-+.
T Consensus 506 ~dka~~~ykeal~ndasc~ealfn-iglt~e~~~~ldeald~f~klh~il~nn~evl~qianiye~led~aqaie~~~q~ 584 (840)
T KOG2003|consen 506 LDKAAEFYKEALNNDASCTEALFN-IGLTAEALGNLDEALDCFLKLHAILLNNAEVLVQIANIYELLEDPAQAIELLMQA 584 (840)
T ss_pred HHHHHHHHHHHHcCchHHHHHHHH-hcccHHHhcCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhCHHHHHHHHHHh
Confidence 999999999998776444444454 3445678899999999998876 567778888889999999999999999777
Q ss_pred HHCCCCCChHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHhhCC-CCCCHHH
Q 007573 397 GLNGFDPDGITFLSLLSACGHAGKVNESMDLFELMVKVYGIIPSSEHYTCLVDILSRAGQLEKAWQITQGMP-FEADTGV 475 (597)
Q Consensus 397 ~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p~~~~ 475 (597)
... ++.|+.....+...|-+.|+-.+|.+.+-.--+ -++.+.++..-|..-|....-+++|+.+|++.. ++|+..-
T Consensus 585 ~sl-ip~dp~ilskl~dlydqegdksqafq~~ydsyr--yfp~nie~iewl~ayyidtqf~ekai~y~ekaaliqp~~~k 661 (840)
T KOG2003|consen 585 NSL-IPNDPAILSKLADLYDQEGDKSQAFQCHYDSYR--YFPCNIETIEWLAAYYIDTQFSEKAINYFEKAALIQPNQSK 661 (840)
T ss_pred ccc-CCCCHHHHHHHHHHhhcccchhhhhhhhhhccc--ccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHhcCccHHH
Confidence 543 455688889999999999999999988765433 455678898899999999999999999999876 8999999
Q ss_pred HHHHHHHH-HhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCc
Q 007573 476 WGSLLAAC-VINLNVELGELAAKKMRELDPQNSAVYVMLSNLYAAAGMW 523 (597)
Q Consensus 476 ~~~l~~~~-~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~ 523 (597)
|..++..| .+.|++.+|..+|+...+.-|.+...+..|...+...|..
T Consensus 662 wqlmiasc~rrsgnyqka~d~yk~~hrkfpedldclkflvri~~dlgl~ 710 (840)
T KOG2003|consen 662 WQLMIASCFRRSGNYQKAFDLYKDIHRKFPEDLDCLKFLVRIAGDLGLK 710 (840)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHHhCccchHHHHHHHHHhccccch
Confidence 99988775 5789999999999999999999999999999988887753
No 28
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.72 E-value=2.4e-13 Score=126.60 Aligned_cols=485 Identities=14% Similarity=0.101 Sum_probs=359.1
Q ss_pred CCcchHHHHHHHHHhcCChHHHHHHHhhcCC---CCcchHHHHHHHHHhCCChhHHHHHHhhCCCC---CcchHHHHHHH
Q 007573 48 QYVFVNNAKISALSRAGKISAARQLFDQMTT---KDVITWNAIITGYWQNGFLQESKNLFQSMPVK---NIVSWNCMIAG 121 (597)
Q Consensus 48 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~ll~~ 121 (597)
-+...|-...+.=...+++..|+.+|++... .+...|-..+..-.++..+..|..++++.... -...|...+-.
T Consensus 71 ~~~~~WikYaqwEesq~e~~RARSv~ERALdvd~r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRVdqlWyKY~ym 150 (677)
T KOG1915|consen 71 LNMQVWIKYAQWEESQKEIQRARSVFERALDVDYRNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRVDQLWYKYIYM 150 (677)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHHHHHHHHHHH
Confidence 3444555555555567889999999999876 67778888999999999999999999998642 23456666666
Q ss_pred HHcCCChHHHHHHHccCC--CCChhhHHHHHHHHHcCCChHHHHHHHccCC--CCCchhHHHHHHHHHhCCChhHHHHHH
Q 007573 122 CIDNDRIDDAFDYFQAMP--ERNTATYNAMISGFLKHGRLEEATRLFEQMP--RRNVISYTAMLDGFMKKGEVDKARALS 197 (597)
Q Consensus 122 ~~~~~~~~~A~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~~~ 197 (597)
--..|++..|.++|++.. +|+...|++.|+.-.+...++.|..++++.. .|++.+|.-..+.-.++|....|..+|
T Consensus 151 EE~LgNi~gaRqiferW~~w~P~eqaW~sfI~fElRykeieraR~IYerfV~~HP~v~~wikyarFE~k~g~~~~aR~Vy 230 (677)
T KOG1915|consen 151 EEMLGNIAGARQIFERWMEWEPDEQAWLSFIKFELRYKEIERARSIYERFVLVHPKVSNWIKYARFEEKHGNVALARSVY 230 (677)
T ss_pred HHHhcccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHheecccHHHHHHHHHHHHhcCcHHHHHHHH
Confidence 667899999999999987 8999999999999999999999999999865 699999999999999999999999999
Q ss_pred HhcccC--C----cchHHHHHHHHHcCCChHHHHHHHhhcCCCCCCc---hHHHHHHHHHHhcCCH---HHHHHH-----
Q 007573 198 DYMSFK--N----VVSWTVMITGYVKNERFCEARELFYRMPDYDKNV---FVVTAMITGFCKVGML---ENARLL----- 260 (597)
Q Consensus 198 ~~m~~~--~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~---~~~~~l~~~~~~~g~~---~~A~~~----- 260 (597)
...+.. | ...+.+...--..+..++.|.-+|.-+++.-|.. ..|..+...=-+-|+. ++++--
T Consensus 231 erAie~~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~q 310 (677)
T KOG1915|consen 231 ERAIEFLGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQ 310 (677)
T ss_pred HHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhH
Confidence 888432 2 2344445555556778889999999888744543 3444444443444553 444322
Q ss_pred HhhcCCC---ChhHHHHHHHHHHHcCChhHHHHHHHHhHHCCCCCCH-------HHHHHHHHHH---hccchhHHHHHHH
Q 007573 261 FERIQPK---DCVSFNAMIAGYAQNGVAEEALRLFSGMIKMDMQPDD-------ATLVSVFTAC---SALQLLNEGRQSH 327 (597)
Q Consensus 261 ~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-------~~~~~ll~~~---~~~~~~~~a~~~~ 327 (597)
++..... |-.+|--.++.-...|+.+...++|++.... ++|-. ..|..+=-+| ....+.+.+.+++
T Consensus 311 YE~~v~~np~nYDsWfdylrL~e~~g~~~~Ire~yErAIan-vpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vy 389 (677)
T KOG1915|consen 311 YEKEVSKNPYNYDSWFDYLRLEESVGDKDRIRETYERAIAN-VPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVY 389 (677)
T ss_pred HHHHHHhCCCCchHHHHHHHHHHhcCCHHHHHHHHHHHHcc-CCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 2222232 5568888888888899999999999998864 45522 1232222222 2567899999999
Q ss_pred HHHHHhCCCCcccHHHHHHHHH----HhcCCHHHHHHHHhccC--CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCC
Q 007573 328 VLVIRNGFEANVSVCNAVITMY----SRCGGILDSELAFRQIH--SPNLVSWNTIIAAFAQHGHYEKALIFFSQMGLNGF 401 (597)
Q Consensus 328 ~~~~~~~~~~~~~~~~~l~~~~----~~~g~~~~A~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~ 401 (597)
+..++ -+|....++..+=-+| .++.++..|.+++.... .|...++...|..-.+.+++|.+..++++.++-+
T Consensus 390 q~~l~-lIPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG~cPK~KlFk~YIelElqL~efDRcRkLYEkfle~~- 467 (677)
T KOG1915|consen 390 QACLD-LIPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIGKCPKDKLFKGYIELELQLREFDRCRKLYEKFLEFS- 467 (677)
T ss_pred HHHHh-hcCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhccCCchhHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-
Confidence 99988 4566777776655555 46789999999998876 6788889999999999999999999999999865
Q ss_pred CCChHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHhhCC-CCCCHHHHHHHH
Q 007573 402 DPDGITFLSLLSACGHAGKVNESMDLFELMVKVYGIIPSSEHYTCLVDILSRAGQLEKAWQITQGMP-FEADTGVWGSLL 480 (597)
Q Consensus 402 ~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p~~~~~~~l~ 480 (597)
+-|..+|......-...|+.+.|..+|+.++....+......|.+.|+--...|.++.|..+++++. ..+...+|.++.
T Consensus 468 Pe~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~rt~h~kvWisFA 547 (677)
T KOG1915|consen 468 PENCYAWSKYAELETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKARALYERLLDRTQHVKVWISFA 547 (677)
T ss_pred hHhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHHHHHHhcccchHHHhHH
Confidence 4567788888877788999999999999998753333335567777787789999999999999987 556666888877
Q ss_pred HHHH-----hcC-----------CHHHHHHHHHHHHhc----CCCC--CchHHHHHHHHHhcCCcHHHHHHHHHHHh
Q 007573 481 AACV-----INL-----------NVELGELAAKKMREL----DPQN--SAVYVMLSNLYAAAGMWRDVTRVRLLMKE 535 (597)
Q Consensus 481 ~~~~-----~~g-----------~~~~a~~~~~~~~~~----~p~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 535 (597)
..-. +.+ +...|..+|+++... +|+. ...+..+.+.-...|...+...+-..|.+
T Consensus 548 ~fe~s~~~~~~~~~~~~~e~~~~~~~~AR~iferAn~~~k~~~~KeeR~~LLEaw~~~E~~~G~~~d~~~V~s~mPk 624 (677)
T KOG1915|consen 548 KFEASASEGQEDEDLAELEITDENIKRARKIFERANTYLKESTPKEERLMLLEAWKNMEETFGTEGDVERVQSKMPK 624 (677)
T ss_pred HHhccccccccccchhhhhcchhHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCchhhHHHHHHhccH
Confidence 6543 334 567889999988753 3432 22333444445556666666666555543
No 29
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.72 E-value=8.2e-13 Score=127.78 Aligned_cols=472 Identities=11% Similarity=0.040 Sum_probs=356.2
Q ss_pred CChHHHHHHHhhcCC--CCcchHHHHHHHHHhCCChhHHHHHHhhCCC---CCcchHHHHHHHHHcCCChHHHHHHHccC
Q 007573 64 GKISAARQLFDQMTT--KDVITWNAIITGYWQNGFLQESKNLFQSMPV---KNIVSWNCMIAGCIDNDRIDDAFDYFQAM 138 (597)
Q Consensus 64 g~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~ll~~~~~~~~~~~A~~~~~~~ 138 (597)
.+.++|+.++.+..+ |. ..-|.-+|++..-++.|..++.+..+ .+...|.+-...--++|+.+...++..+-
T Consensus 390 E~~~darilL~rAveccp~---s~dLwlAlarLetYenAkkvLNkaRe~iptd~~IWitaa~LEE~ngn~~mv~kii~rg 466 (913)
T KOG0495|consen 390 EEPEDARILLERAVECCPQ---SMDLWLALARLETYENAKKVLNKAREIIPTDREIWITAAKLEEANGNVDMVEKIIDRG 466 (913)
T ss_pred cChHHHHHHHHHHHHhccc---hHHHHHHHHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 444445555555554 21 12233344555566666666666554 37777777777777777777777766654
Q ss_pred C--------CCChhhHHHHHHHHHcCCChHHHHHHHccCCC------CCchhHHHHHHHHHhCCChhHHHHHHHhcccC-
Q 007573 139 P--------ERNTATYNAMISGFLKHGRLEEATRLFEQMPR------RNVISYTAMLDGFMKKGEVDKARALSDYMSFK- 203 (597)
Q Consensus 139 ~--------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~------~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~- 203 (597)
. +-+-..|..=...|-+.|..-.+..+...... .--.+|+.-.+.|.+.+.++-|..+|....+.
T Consensus 467 l~~L~~ngv~i~rdqWl~eAe~~e~agsv~TcQAIi~avigigvEeed~~~tw~~da~~~~k~~~~~carAVya~alqvf 546 (913)
T KOG0495|consen 467 LSELQANGVEINRDQWLKEAEACEDAGSVITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAVYAHALQVF 546 (913)
T ss_pred HHHHhhcceeecHHHHHHHHHHHhhcCChhhHHHHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHHHHHHHHhhc
Confidence 4 23444455555555555655555555544331 12347888888888999999999888877432
Q ss_pred --CcchHHHHHHHHHcCCChHHHHHHHhhcCCCCCC-chHHHHHHHHHHhcCCHHHHHHHHhhcCC---CChhHHHHHHH
Q 007573 204 --NVVSWTVMITGYVKNERFCEARELFYRMPDYDKN-VFVVTAMITGFCKVGMLENARLLFERIQP---KDCVSFNAMIA 277 (597)
Q Consensus 204 --~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~ 277 (597)
+...|......--..|..+.-..+++.+...-|. ...|......+-..|++..|..++.+.-+ .+...|-.-+.
T Consensus 547 p~k~slWlra~~~ek~hgt~Esl~Allqkav~~~pkae~lwlM~ake~w~agdv~~ar~il~~af~~~pnseeiwlaavK 626 (913)
T KOG0495|consen 547 PCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQCPKAEILWLMYAKEKWKAGDVPAARVILDQAFEANPNSEEIWLAAVK 626 (913)
T ss_pred cchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCCcHHHHHHHHH
Confidence 4466766666666788999999999988875554 44566667788889999999999987653 45678888899
Q ss_pred HHHHcCChhHHHHHHHHhHHCCCCCCHHHHHHHHHHHhccchhHHHHHHHHHHHHhCCCCcccHHHHHHHHHHhcCCHHH
Q 007573 278 GYAQNGVAEEALRLFSGMIKMDMQPDDATLVSVFTACSALQLLNEGRQSHVLVIRNGFEANVSVCNAVITMYSRCGGILD 357 (597)
Q Consensus 278 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 357 (597)
....+.+++.|..+|.+... ..|+...|.--+..--..+..++|.++++..++.- +.-...|-.+...+-+.++++.
T Consensus 627 le~en~e~eraR~llakar~--~sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~f-p~f~Kl~lmlGQi~e~~~~ie~ 703 (913)
T KOG0495|consen 627 LEFENDELERARDLLAKARS--ISGTERVWMKSANLERYLDNVEEALRLLEEALKSF-PDFHKLWLMLGQIEEQMENIEM 703 (913)
T ss_pred HhhccccHHHHHHHHHHHhc--cCCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHhC-CchHHHHHHHhHHHHHHHHHHH
Confidence 99999999999999998776 46777777666666667889999999998888763 5556778888999999999999
Q ss_pred HHHHHhccC---CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHhccCcHHHHHHHHHHhHHh
Q 007573 358 SELAFRQIH---SPNLVSWNTIIAAFAQHGHYEKALIFFSQMGLNGFDPDGITFLSLLSACGHAGKVNESMDLFELMVKV 434 (597)
Q Consensus 358 A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 434 (597)
|...|..-. +..+..|-.+...--+.|..-.|..+|++.+-.+ +-+...|...+..-.+.|..+.|..+..++.+
T Consensus 704 aR~aY~~G~k~cP~~ipLWllLakleEk~~~~~rAR~ildrarlkN-Pk~~~lwle~Ir~ElR~gn~~~a~~lmakALQ- 781 (913)
T KOG0495|consen 704 AREAYLQGTKKCPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKN-PKNALLWLESIRMELRAGNKEQAELLMAKALQ- 781 (913)
T ss_pred HHHHHHhccccCCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcC-CCcchhHHHHHHHHHHcCCHHHHHHHHHHHHH-
Confidence 999998765 3445678888888888899999999999988664 45677899999999999999999999988887
Q ss_pred cCCCCChHHHHHHHHHHhhcCCHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHH
Q 007573 435 YGIIPSSEHYTCLVDILSRAGQLEKAWQITQGMPFEADTGVWGSLLAACVINLNVELGELAAKKMRELDPQNSAVYVMLS 514 (597)
Q Consensus 435 ~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~ 514 (597)
..+.+...|..-|.+..+-++-....+.+++.. -|+.+..++...+.....++.|..-|.++++.+|++..++..+-
T Consensus 782 -ecp~sg~LWaEaI~le~~~~rkTks~DALkkce--~dphVllaia~lfw~e~k~~kar~Wf~Ravk~d~d~GD~wa~fy 858 (913)
T KOG0495|consen 782 -ECPSSGLLWAEAIWLEPRPQRKTKSIDALKKCE--HDPHVLLAIAKLFWSEKKIEKAREWFERAVKKDPDNGDAWAWFY 858 (913)
T ss_pred -hCCccchhHHHHHHhccCcccchHHHHHHHhcc--CCchhHHHHHHHHHHHHHHHHHHHHHHHHHccCCccchHHHHHH
Confidence 455567788888998888888888888888775 45666677777788888999999999999999999999999999
Q ss_pred HHHHhcCCcHHHHHHHHHHHhCCCccCCCeeEEE
Q 007573 515 NLYAAAGMWRDVTRVRLLMKEQGVTKQCAYSWIE 548 (597)
Q Consensus 515 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~s~~~ 548 (597)
..+...|.-++-.++++...... |..|..|..
T Consensus 859 kfel~hG~eed~kev~~~c~~~E--P~hG~~W~a 890 (913)
T KOG0495|consen 859 KFELRHGTEEDQKEVLKKCETAE--PTHGELWQA 890 (913)
T ss_pred HHHHHhCCHHHHHHHHHHHhccC--CCCCcHHHH
Confidence 99999999999899998876543 455666654
No 30
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.69 E-value=1.6e-12 Score=130.66 Aligned_cols=307 Identities=16% Similarity=0.124 Sum_probs=187.4
Q ss_pred HHHhcCChHHHHHHHhhcCC---CCcchHHHHHHHHHhCCChhHHHHHHhhCC---CCCcchHHHHHHHHHcCCChHHHH
Q 007573 59 ALSRAGKISAARQLFDQMTT---KDVITWNAIITGYWQNGFLQESKNLFQSMP---VKNIVSWNCMIAGCIDNDRIDDAF 132 (597)
Q Consensus 59 ~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~ll~~~~~~~~~~~A~ 132 (597)
.+...|++++|.+++.++.+ .+...|.+|...|-+.|+.++++..+-.+- ..|...|..+.....+.|.+.+|.
T Consensus 148 ~lfarg~~eeA~~i~~EvIkqdp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~ladls~~~~~i~qA~ 227 (895)
T KOG2076|consen 148 NLFARGDLEEAEEILMEVIKQDPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKRLADLSEQLGNINQAR 227 (895)
T ss_pred HHHHhCCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhcccHHHHH
Confidence 33445999999999999876 456689999999999999999988765443 337788999999999999999999
Q ss_pred HHHccCCCC---ChhhHHHHHHHHHcCCChHHHHHHHccCCCCCc----h----hHHHHHHHHHhCCChhHHHHHHHhcc
Q 007573 133 DYFQAMPER---NTATYNAMISGFLKHGRLEEATRLFEQMPRRNV----I----SYTAMLDGFMKKGEVDKARALSDYMS 201 (597)
Q Consensus 133 ~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~----~----~~~~li~~~~~~g~~~~A~~~~~~m~ 201 (597)
-.|.+..+. +-..+---...|-+.|+...|...|.++.+.++ . .--.+++.+...++.+.|.+.++...
T Consensus 228 ~cy~rAI~~~p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~le~~~ 307 (895)
T KOG2076|consen 228 YCYSRAIQANPSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKALEGAL 307 (895)
T ss_pred HHHHHHHhcCCcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 999988833 333444456788899999999998888765333 1 12234566667777788888777763
Q ss_pred c-----CCcchHHHHHHHHHcCCChHHHHHHHhhcCC-----------------------------CCCCchH-HHHHHH
Q 007573 202 F-----KNVVSWTVMITGYVKNERFCEARELFYRMPD-----------------------------YDKNVFV-VTAMIT 246 (597)
Q Consensus 202 ~-----~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~-----------------------------~~~~~~~-~~~l~~ 246 (597)
. .+...++.++..+.+...++.|......... ..++..+ ...+.-
T Consensus 308 s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v~rl~icL 387 (895)
T KOG2076|consen 308 SKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRVIRLMICL 387 (895)
T ss_pred hhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchhHhHhhhh
Confidence 3 2345677777777777777777666554432 0111112 111111
Q ss_pred HHHhcCCHHHHHHHHhhcC----CCChhHHHHHHHHHHHcCChhHHHHHHHHhHHCCCCCCHHHHHHHHHHHhccchhHH
Q 007573 247 GFCKVGMLENARLLFERIQ----PKDCVSFNAMIAGYAQNGVAEEALRLFSGMIKMDMQPDDATLVSVFTACSALQLLNE 322 (597)
Q Consensus 247 ~~~~~g~~~~A~~~~~~~~----~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~ 322 (597)
...+.+...+++..|-... ..++..|.-+..+|...|++.+|+.+|..+......-+...|..+..++...|..+.
T Consensus 388 ~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l~e~e~ 467 (895)
T KOG2076|consen 388 VHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYMELGEYEE 467 (895)
T ss_pred hcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHHHhhHHH
Confidence 1112222233322221111 123345555555666666666666666655554333344455555555555566666
Q ss_pred HHHHHHHHHHhCCCCcccHHHHHHHHHHhcCCHHHHHHHHhccC
Q 007573 323 GRQSHVLVIRNGFEANVSVCNAVITMYSRCGGILDSELAFRQIH 366 (597)
Q Consensus 323 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 366 (597)
|.+.+..++... +.+..+--.|...+.+.|+.++|.+++..+.
T Consensus 468 A~e~y~kvl~~~-p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~ 510 (895)
T KOG2076|consen 468 AIEFYEKVLILA-PDNLDARITLASLYQQLGNHEKALETLEQII 510 (895)
T ss_pred HHHHHHHHHhcC-CCchhhhhhHHHHHHhcCCHHHHHHHHhccc
Confidence 666665555543 3344444455555555566666555555543
No 31
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.67 E-value=1.9e-12 Score=120.65 Aligned_cols=447 Identities=11% Similarity=0.108 Sum_probs=337.1
Q ss_pred cchHHHHHHHHHhCCChhHHHHHHhhCCCC---CcchHHHHHHHHHcCCChHHHHHHHccCC---CCChhhHHHHHHHHH
Q 007573 81 VITWNAIITGYWQNGFLQESKNLFQSMPVK---NIVSWNCMIAGCIDNDRIDDAFDYFQAMP---ERNTATYNAMISGFL 154 (597)
Q Consensus 81 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~ll~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~l~~~~~ 154 (597)
...|-....--..++++..|.++|++.+.. +...|...+..-.++..+..|..++++.. ++-...|--.+.+--
T Consensus 73 ~~~WikYaqwEesq~e~~RARSv~ERALdvd~r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRVdqlWyKY~ymEE 152 (677)
T KOG1915|consen 73 MQVWIKYAQWEESQKEIQRARSVFERALDVDYRNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRVDQLWYKYIYMEE 152 (677)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHHHHHHHHHHHHH
Confidence 334555555556678899999999999864 77788888888899999999999999987 444456666777777
Q ss_pred cCCChHHHHHHHccCC--CCCchhHHHHHHHHHhCCChhHHHHHHHhc--ccCCcchHHHHHHHHHcCCChHHHHHHHhh
Q 007573 155 KHGRLEEATRLFEQMP--RRNVISYTAMLDGFMKKGEVDKARALSDYM--SFKNVVSWTVMITGYVKNERFCEARELFYR 230 (597)
Q Consensus 155 ~~g~~~~A~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~m--~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~ 230 (597)
..|++..|.++|++-. +|+...|++.|+.-.+...++.|..+|++. ..|++.+|....+.-.+.|....+..+|+.
T Consensus 153 ~LgNi~gaRqiferW~~w~P~eqaW~sfI~fElRykeieraR~IYerfV~~HP~v~~wikyarFE~k~g~~~~aR~Vyer 232 (677)
T KOG1915|consen 153 MLGNIAGARQIFERWMEWEPDEQAWLSFIKFELRYKEIERARSIYERFVLVHPKVSNWIKYARFEEKHGNVALARSVYER 232 (677)
T ss_pred HhcccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHheecccHHHHHHHHHHHHhcCcHHHHHHHHHH
Confidence 8899999999999876 599999999999999999999999999997 679999999999999999999999999999
Q ss_pred cCCCCCCc----hHHHHHHHHHHhcCCHHHHHHHHhhc----CCCC-hhHHHHHHHHHHHcCChhHHHHH--------HH
Q 007573 231 MPDYDKNV----FVVTAMITGFCKVGMLENARLLFERI----QPKD-CVSFNAMIAGYAQNGVAEEALRL--------FS 293 (597)
Q Consensus 231 ~~~~~~~~----~~~~~l~~~~~~~g~~~~A~~~~~~~----~~~~-~~~~~~li~~~~~~g~~~~A~~~--------~~ 293 (597)
+.+.-.+. ..+.+....=.++..++.|.-+|+-. ++.. ...|......--+-|+.....+. |+
T Consensus 233 Aie~~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE 312 (677)
T KOG1915|consen 233 AIEFLGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYE 312 (677)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHH
Confidence 87733332 34455555555677888888888654 3322 33455555444455664443332 33
Q ss_pred HhHHCCCCCCHHHHHHHHHHHhccchhHHHHHHHHHHHHhCCCCcc--cHHHHHHHHH--------HhcCCHHHHHHHHh
Q 007573 294 GMIKMDMQPDDATLVSVFTACSALQLLNEGRQSHVLVIRNGFEANV--SVCNAVITMY--------SRCGGILDSELAFR 363 (597)
Q Consensus 294 ~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~l~~~~--------~~~g~~~~A~~~~~ 363 (597)
.+...+ +-|-.+|--.+..-...|+.+...++++.++..- +|-. ..|...|..+ ....+.+.+.++++
T Consensus 313 ~~v~~n-p~nYDsWfdylrL~e~~g~~~~Ire~yErAIanv-pp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq 390 (677)
T KOG1915|consen 313 KEVSKN-PYNYDSWFDYLRLEESVGDKDRIRETYERAIANV-PPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQ 390 (677)
T ss_pred HHHHhC-CCCchHHHHHHHHHHhcCCHHHHHHHHHHHHccC-CchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 444432 4567778788888888899999999999998764 4421 1222222221 34678899999997
Q ss_pred ccC---CCChhhHHH----HHHHHHHcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHhccCcHHHHHHHHHHhHHhcC
Q 007573 364 QIH---SPNLVSWNT----IIAAFAQHGHYEKALIFFSQMGLNGFDPDGITFLSLLSACGHAGKVNESMDLFELMVKVYG 436 (597)
Q Consensus 364 ~~~---~~~~~~~~~----li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~ 436 (597)
... +....|+.- ......++.+...|.+++...+ |.-|...+|...|..-.+.+.++.+..+++....
T Consensus 391 ~~l~lIPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AI--G~cPK~KlFk~YIelElqL~efDRcRkLYEkfle--- 465 (677)
T KOG1915|consen 391 ACLDLIPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAI--GKCPKDKLFKGYIELELQLREFDRCRKLYEKFLE--- 465 (677)
T ss_pred HHHhhcCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHh--ccCCchhHHHHHHHHHHHHhhHHHHHHHHHHHHh---
Confidence 765 444444444 4444557889999999999876 6789999999999999999999999999999875
Q ss_pred CCC-ChHHHHHHHHHHhhcCCHHHHHHHHhhCCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHH
Q 007573 437 IIP-SSEHYTCLVDILSRAGQLEKAWQITQGMPFEAD----TGVWGSLLAACVINLNVELGELAAKKMRELDPQNSAVYV 511 (597)
Q Consensus 437 ~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~ 511 (597)
..| +..+|......-...|+.+.|..+|.-...+|. ...|.+.|..-...|.++.|..+|+++++..+... ++.
T Consensus 466 ~~Pe~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~rt~h~k-vWi 544 (677)
T KOG1915|consen 466 FSPENCYAWSKYAELETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKARALYERLLDRTQHVK-VWI 544 (677)
T ss_pred cChHhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHHHHHHhcccch-HHH
Confidence 344 467888888888899999999999998775663 34677788877899999999999999999877644 565
Q ss_pred HHHHHHH-----hcC-----------CcHHHHHHHHHHHh
Q 007573 512 MLSNLYA-----AAG-----------MWRDVTRVRLLMKE 535 (597)
Q Consensus 512 ~l~~~~~-----~~g-----------~~~~A~~~~~~~~~ 535 (597)
..+..-. ..| ....|.++|++...
T Consensus 545 sFA~fe~s~~~~~~~~~~~~~e~~~~~~~~AR~iferAn~ 584 (677)
T KOG1915|consen 545 SFAKFEASASEGQEDEDLAELEITDENIKRARKIFERANT 584 (677)
T ss_pred hHHHHhccccccccccchhhhhcchhHHHHHHHHHHHHHH
Confidence 5555443 344 56678888887754
No 32
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.66 E-value=4.3e-16 Score=147.68 Aligned_cols=215 Identities=14% Similarity=0.156 Sum_probs=113.5
Q ss_pred ccchhHHHHHHHHHHHHhCCCCcccHHHHHHHHHHhcCCHHHHHHHHhccC--CCChhhHHHHHHHHHHcCCHHHHHHHH
Q 007573 316 ALQLLNEGRQSHVLVIRNGFEANVSVCNAVITMYSRCGGILDSELAFRQIH--SPNLVSWNTIIAAFAQHGHYEKALIFF 393 (597)
Q Consensus 316 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~~~ 393 (597)
..++.+.|...++.+...+ +.++..+..++.. ...+++++|..++.... .++...+..++..+...++++++.+++
T Consensus 56 ~~~~~~~A~~ay~~l~~~~-~~~~~~~~~l~~l-~~~~~~~~A~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~l 133 (280)
T PF13429_consen 56 SLGDYDEAIEAYEKLLASD-KANPQDYERLIQL-LQDGDPEEALKLAEKAYERDGDPRYLLSALQLYYRLGDYDEAEELL 133 (280)
T ss_dssp ----------------------------------------------------------------H-HHHTT-HHHHHHHH
T ss_pred ccccccccccccccccccc-ccccccccccccc-cccccccccccccccccccccccchhhHHHHHHHHHhHHHHHHHHH
Confidence 3444444444444444433 2244455555555 57778888887776653 456677788888899999999999999
Q ss_pred HHHHHCC-CCCChHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCC-ChHHHHHHHHHHhhcCCHHHHHHHHhhCC--C
Q 007573 394 SQMGLNG-FDPDGITFLSLLSACGHAGKVNESMDLFELMVKVYGIIP-SSEHYTCLVDILSRAGQLEKAWQITQGMP--F 469 (597)
Q Consensus 394 ~~m~~~g-~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~ 469 (597)
+.+.... .+++...|..+...+.+.|+.++|.+.+++..+. .| +......++..+...|+.+++.++++... .
T Consensus 134 ~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~---~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~ 210 (280)
T PF13429_consen 134 EKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYRKALEL---DPDDPDARNALAWLLIDMGDYDEAREALKRLLKAA 210 (280)
T ss_dssp HHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH----TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-
T ss_pred HHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc---CCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC
Confidence 9987543 3456777888888999999999999999999864 45 47788899999999999999888887664 3
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCcHHHHHHHHHHHh
Q 007573 470 EADTGVWGSLLAACVINLNVELGELAAKKMRELDPQNSAVYVMLSNLYAAAGMWRDVTRVRLLMKE 535 (597)
Q Consensus 470 ~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 535 (597)
+.|+..|..+..++...|+.++|...++++.+.+|+|+.+...++.++...|+.++|.+++++..+
T Consensus 211 ~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~p~d~~~~~~~a~~l~~~g~~~~A~~~~~~~~~ 276 (280)
T PF13429_consen 211 PDDPDLWDALAAAYLQLGRYEEALEYLEKALKLNPDDPLWLLAYADALEQAGRKDEALRLRRQALR 276 (280)
T ss_dssp HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHT-----------------
T ss_pred cCHHHHHHHHHHHhcccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 456678899999999999999999999999999999999999999999999999999999887643
No 33
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.65 E-value=3.7e-13 Score=125.95 Aligned_cols=214 Identities=19% Similarity=0.127 Sum_probs=172.6
Q ss_pred ccchhHHHHHHHHHHHHhCCCCcccHHHHHHHHHHhcCCHHHHHHHHhccC---CCChhhHHHHHHHHHHcCCHHHHHHH
Q 007573 316 ALQLLNEGRQSHVLVIRNGFEANVSVCNAVITMYSRCGGILDSELAFRQIH---SPNLVSWNTIIAAFAQHGHYEKALIF 392 (597)
Q Consensus 316 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~ 392 (597)
-.|+.-.+..-++.+++.... +...|-.+..+|....+.++....|+... +.|+.+|..-.+.+.-.+++++|..-
T Consensus 338 L~g~~~~a~~d~~~~I~l~~~-~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~n~dvYyHRgQm~flL~q~e~A~aD 416 (606)
T KOG0547|consen 338 LKGDSLGAQEDFDAAIKLDPA-FNSLYIKRAAAYADENQSEKMWKDFNKAEDLDPENPDVYYHRGQMRFLLQQYEEAIAD 416 (606)
T ss_pred hcCCchhhhhhHHHHHhcCcc-cchHHHHHHHHHhhhhccHHHHHHHHHHHhcCCCCCchhHhHHHHHHHHHHHHHHHHH
Confidence 356777777888888877633 33336667778888999999999998776 56677888888888888999999999
Q ss_pred HHHHHHCCCCC-ChHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHhhCC-CC
Q 007573 393 FSQMGLNGFDP-DGITFLSLLSACGHAGKVNESMDLFELMVKVYGIIPSSEHYTCLVDILSRAGQLEKAWQITQGMP-FE 470 (597)
Q Consensus 393 ~~~m~~~g~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~ 470 (597)
|++.+.. .| +...|..+..+..+.+++++++..|++..+ .++--++.|+....++...++++.|.+.|+... .+
T Consensus 417 F~Kai~L--~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kk--kFP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE 492 (606)
T KOG0547|consen 417 FQKAISL--DPENAYAYIQLCCALYRQHKIAESMKTFEEAKK--KFPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELE 492 (606)
T ss_pred HHHHhhc--ChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH--hCCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhc
Confidence 9999865 44 456777777788899999999999999987 455568899999999999999999999998754 44
Q ss_pred CC---------HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCcHHHHHHHHHHHh
Q 007573 471 AD---------TGVWGSLLAACVINLNVELGELAAKKMRELDPQNSAVYVMLSNLYAAAGMWRDVTRVRLLMKE 535 (597)
Q Consensus 471 p~---------~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 535 (597)
|+ +.+-.+++.. .-.+++.+|+.+++++++++|....+|..|+.....+|+.++|+++|++...
T Consensus 493 ~~~~~~~v~~~plV~Ka~l~~-qwk~d~~~a~~Ll~KA~e~Dpkce~A~~tlaq~~lQ~~~i~eAielFEksa~ 565 (606)
T KOG0547|consen 493 PREHLIIVNAAPLVHKALLVL-QWKEDINQAENLLRKAIELDPKCEQAYETLAQFELQRGKIDEAIELFEKSAQ 565 (606)
T ss_pred cccccccccchhhhhhhHhhh-chhhhHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 44 1222223222 2348999999999999999999999999999999999999999999998654
No 34
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.65 E-value=7e-12 Score=121.48 Aligned_cols=452 Identities=14% Similarity=0.114 Sum_probs=359.8
Q ss_pred HHHHHHHHhcCChHHHHHHHhhcCC---CCcchHHHHHHHHHhCCChhHHHHHHhhCCC--------CCcchHHHHHHHH
Q 007573 54 NAKISALSRAGKISAARQLFDQMTT---KDVITWNAIITGYWQNGFLQESKNLFQSMPV--------KNIVSWNCMIAGC 122 (597)
Q Consensus 54 ~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--------~~~~~~~~ll~~~ 122 (597)
.-|.-+|++..-++.|.+++++..+ .+...|.+-...--++|+.+...++..+... -|...|..=...|
T Consensus 410 ~dLwlAlarLetYenAkkvLNkaRe~iptd~~IWitaa~LEE~ngn~~mv~kii~rgl~~L~~ngv~i~rdqWl~eAe~~ 489 (913)
T KOG0495|consen 410 MDLWLALARLETYENAKKVLNKAREIIPTDREIWITAAKLEEANGNVDMVEKIIDRGLSELQANGVEINRDQWLKEAEAC 489 (913)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhcceeecHHHHHHHHHHH
Confidence 3456677888889999999998866 5666787776666788998888888777642 1666777777788
Q ss_pred HcCCChHHHHHHHccCC------CCChhhHHHHHHHHHcCCChHHHHHHHccCCC---CCchhHHHHHHHHHhCCChhHH
Q 007573 123 IDNDRIDDAFDYFQAMP------ERNTATYNAMISGFLKHGRLEEATRLFEQMPR---RNVISYTAMLDGFMKKGEVDKA 193 (597)
Q Consensus 123 ~~~~~~~~A~~~~~~~~------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A 193 (597)
-+.|.+-.+..+..... +.-..+|+.-...|.+.+.++-|+.+|....+ .+...|...+..--..|..+..
T Consensus 490 e~agsv~TcQAIi~avigigvEeed~~~tw~~da~~~~k~~~~~carAVya~alqvfp~k~slWlra~~~ek~hgt~Esl 569 (913)
T KOG0495|consen 490 EDAGSVITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAVYAHALQVFPCKKSLWLRAAMFEKSHGTRESL 569 (913)
T ss_pred hhcCChhhHHHHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHHHHHHHHhhccchhHHHHHHHHHHHhcCcHHHH
Confidence 88888777777766655 23346888889999999999999999988775 3556788877777778999999
Q ss_pred HHHHHhccc---CCcchHHHHHHHHHcCCChHHHHHHHhhcCCCCCC-chHHHHHHHHHHhcCCHHHHHHHHhhcCC--C
Q 007573 194 RALSDYMSF---KNVVSWTVMITGYVKNERFCEARELFYRMPDYDKN-VFVVTAMITGFCKVGMLENARLLFERIQP--K 267 (597)
Q Consensus 194 ~~~~~~m~~---~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~ 267 (597)
..+|++.+. .....|......+-..|+...|..++..+.+..|+ ..+|-+-+.......+++.|..+|.+... +
T Consensus 570 ~Allqkav~~~pkae~lwlM~ake~w~agdv~~ar~il~~af~~~pnseeiwlaavKle~en~e~eraR~llakar~~sg 649 (913)
T KOG0495|consen 570 EALLQKAVEQCPKAEILWLMYAKEKWKAGDVPAARVILDQAFEANPNSEEIWLAAVKLEFENDELERARDLLAKARSISG 649 (913)
T ss_pred HHHHHHHHHhCCcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCCcHHHHHHHHHHhhccccHHHHHHHHHHHhccCC
Confidence 999999843 34456666677777889999999999999886664 56888889999999999999999988654 5
Q ss_pred ChhHHHHHHHHHHHcCChhHHHHHHHHhHHCCCCCCHH-HHHHHHHHHhccchhHHHHHHHHHHHHhCCCCcccHHHHHH
Q 007573 268 DCVSFNAMIAGYAQNGVAEEALRLFSGMIKMDMQPDDA-TLVSVFTACSALQLLNEGRQSHVLVIRNGFEANVSVCNAVI 346 (597)
Q Consensus 268 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 346 (597)
+...|.--+...-..++.++|++++++.++. -|+-. .|..+...+.+.++.+.|...|..-.+. ++..+..|-.|.
T Consensus 650 TeRv~mKs~~~er~ld~~eeA~rllEe~lk~--fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~-cP~~ipLWllLa 726 (913)
T KOG0495|consen 650 TERVWMKSANLERYLDNVEEALRLLEEALKS--FPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKK-CPNSIPLWLLLA 726 (913)
T ss_pred cchhhHHHhHHHHHhhhHHHHHHHHHHHHHh--CCchHHHHHHHhHHHHHHHHHHHHHHHHHhcccc-CCCCchHHHHHH
Confidence 6667777777777789999999999998874 56544 4555666777888888888877665544 366788899999
Q ss_pred HHHHhcCCHHHHHHHHhccC---CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHhccCcHHH
Q 007573 347 TMYSRCGGILDSELAFRQIH---SPNLVSWNTIIAAFAQHGHYEKALIFFSQMGLNGFDPDGITFLSLLSACGHAGKVNE 423 (597)
Q Consensus 347 ~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~ 423 (597)
..--+.|.+-.|+.++++.. +.+...|-..|..-.+.|+.+.|..+..+..+. ++-+...|..-|...-+.++-..
T Consensus 727 kleEk~~~~~rAR~ildrarlkNPk~~~lwle~Ir~ElR~gn~~~a~~lmakALQe-cp~sg~LWaEaI~le~~~~rkTk 805 (913)
T KOG0495|consen 727 KLEEKDGQLVRARSILDRARLKNPKNALLWLESIRMELRAGNKEQAELLMAKALQE-CPSSGLLWAEAIWLEPRPQRKTK 805 (913)
T ss_pred HHHHHhcchhhHHHHHHHHHhcCCCcchhHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCccchhHHHHHHhccCcccchH
Confidence 99999999999999999876 567889999999999999999999999988865 45556677777777777766444
Q ss_pred HHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHhhCC-CCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 007573 424 SMDLFELMVKVYGIIPSSEHYTCLVDILSRAGQLEKAWQITQGMP-FEAD-TGVWGSLLAACVINLNVELGELAAKKMRE 501 (597)
Q Consensus 424 a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 501 (597)
....++ ....|+.+.-.+...+....+++.|.+.|.+.. ..|| ..+|.-+...+..+|.-+.-.+++.+...
T Consensus 806 s~DALk------kce~dphVllaia~lfw~e~k~~kar~Wf~Ravk~d~d~GD~wa~fykfel~hG~eed~kev~~~c~~ 879 (913)
T KOG0495|consen 806 SIDALK------KCEHDPHVLLAIAKLFWSEKKIEKAREWFERAVKKDPDNGDAWAWFYKFELRHGTEEDQKEVLKKCET 879 (913)
T ss_pred HHHHHH------hccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHccCCccchHHHHHHHHHHHhCCHHHHHHHHHHHhc
Confidence 444433 335678888899999999999999999998876 5665 56898899999999999999999999999
Q ss_pred cCCCCCchHHHHHH
Q 007573 502 LDPQNSAVYVMLSN 515 (597)
Q Consensus 502 ~~p~~~~~~~~l~~ 515 (597)
-+|.....+..+..
T Consensus 880 ~EP~hG~~W~avSK 893 (913)
T KOG0495|consen 880 AEPTHGELWQAVSK 893 (913)
T ss_pred cCCCCCcHHHHHhh
Confidence 99998766655443
No 35
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.65 E-value=6.1e-13 Score=133.70 Aligned_cols=326 Identities=14% Similarity=0.143 Sum_probs=207.5
Q ss_pred HHHHHHHhCCChhHHHHHHHhcccC---CcchHHHHHHHHHcCCChHHHHHHHhhcCCCCC-CchHHHHHHHHHHhcCCH
Q 007573 179 AMLDGFMKKGEVDKARALSDYMSFK---NVVSWTVMITGYVKNERFCEARELFYRMPDYDK-NVFVVTAMITGFCKVGML 254 (597)
Q Consensus 179 ~li~~~~~~g~~~~A~~~~~~m~~~---~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~ 254 (597)
...+.....|+.++|..++.+.++. ....|.+|...|-..|+.+++....-.+..+.| |...|..+.....+.|++
T Consensus 144 ~eAN~lfarg~~eeA~~i~~EvIkqdp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~ladls~~~~~i 223 (895)
T KOG2076|consen 144 GEANNLFARGDLEEAEEILMEVIKQDPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKRLADLSEQLGNI 223 (895)
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhcccH
Confidence 3344444457777777777777443 346777777777777777777776655555444 455677777777777777
Q ss_pred HHHHHHHhhcCCC---ChhHHHHHHHHHHHcCChhHHHHHHHHhHHCCCCCCHHHHHH----HHHHHhccchhHHHHHHH
Q 007573 255 ENARLLFERIQPK---DCVSFNAMIAGYAQNGVAEEALRLFSGMIKMDMQPDDATLVS----VFTACSALQLLNEGRQSH 327 (597)
Q Consensus 255 ~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~----ll~~~~~~~~~~~a~~~~ 327 (597)
+.|.-.|.+..+. +...+-.-+..|-+.|+...|+..|.++.+...+.|...+.. ++..+...++.+.|.+.+
T Consensus 224 ~qA~~cy~rAI~~~p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~l 303 (895)
T KOG2076|consen 224 NQARYCYSRAIQANPSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKAL 303 (895)
T ss_pred HHHHHHHHHHHhcCCcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 7777777765543 333333445567777777777777777776532222222222 222233333334444444
Q ss_pred HHHHHh-CCCCcccHHHHHHHHHHhcCCHHHHHHHHhccCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHH--------
Q 007573 328 VLVIRN-GFEANVSVCNAVITMYSRCGGILDSELAFRQIHSPNLVSWNTIIAAFAQHGHYEKALIFFSQMGL-------- 398 (597)
Q Consensus 328 ~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-------- 398 (597)
...... +-..+...++ .++..+.+...++.|......+..
T Consensus 304 e~~~s~~~~~~~~ed~n-------------------------------i~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~ 352 (895)
T KOG2076|consen 304 EGALSKEKDEASLEDLN-------------------------------ILAELFLKNKQSDKALMKIVDDRNRESEKDDS 352 (895)
T ss_pred HHHHhhccccccccHHH-------------------------------HHHHHHHHhHHHHHhhHHHHHHhccccCCChh
Confidence 433331 1122333444 444444444445555444444433
Q ss_pred -------------------CCCCCChHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCC--ChHHHHHHHHHHhhcCCH
Q 007573 399 -------------------NGFDPDGITFLSLLSACGHAGKVNESMDLFELMVKVYGIIP--SSEHYTCLVDILSRAGQL 457 (597)
Q Consensus 399 -------------------~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p--~~~~~~~l~~~~~~~g~~ 457 (597)
.++.++... ..+.-++.+....+....+....... .+.| +...|.-+.++|.+.|++
T Consensus 353 e~~~~~~~~~~~~~~~~~~~~~s~~l~v-~rl~icL~~L~~~e~~e~ll~~l~~~-n~~~~d~~dL~~d~a~al~~~~~~ 430 (895)
T KOG2076|consen 353 EWDTDERRREEPNALCEVGKELSYDLRV-IRLMICLVHLKERELLEALLHFLVED-NVWVSDDVDLYLDLADALTNIGKY 430 (895)
T ss_pred hhhhhhhccccccccccCCCCCCccchh-HhHhhhhhcccccchHHHHHHHHHHh-cCChhhhHHHHHHHHHHHHhcccH
Confidence 112233222 12222334444444444444444443 5444 477899999999999999
Q ss_pred HHHHHHHhhCCCC-C--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCcHHHHHHHHHHH
Q 007573 458 EKAWQITQGMPFE-A--DTGVWGSLLAACVINLNVELGELAAKKMRELDPQNSAVYVMLSNLYAAAGMWRDVTRVRLLMK 534 (597)
Q Consensus 458 ~~A~~~~~~~~~~-p--~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 534 (597)
.+|.+++..+... + +...|..++..|...|..++|++.|++++...|++..+...|+.++..+|+.++|.+++..+.
T Consensus 431 ~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l~e~e~A~e~y~kvl~~~p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~ 510 (895)
T KOG2076|consen 431 KEALRLLSPITNREGYQNAFVWYKLARCYMELGEYEEAIEFYEKVLILAPDNLDARITLASLYQQLGNHEKALETLEQII 510 (895)
T ss_pred HHHHHHHHHHhcCccccchhhhHHHHHHHHHHhhHHHHHHHHHHHHhcCCCchhhhhhHHHHHHhcCCHHHHHHHHhccc
Confidence 9999999988722 2 466899999999999999999999999999999999999999999999999999999999876
Q ss_pred hCC
Q 007573 535 EQG 537 (597)
Q Consensus 535 ~~~ 537 (597)
.-+
T Consensus 511 ~~D 513 (895)
T KOG2076|consen 511 NPD 513 (895)
T ss_pred CCC
Confidence 433
No 36
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.64 E-value=1.2e-13 Score=127.89 Aligned_cols=416 Identities=12% Similarity=0.104 Sum_probs=278.8
Q ss_pred HHHHHHcCCChHHHHHHHccCCC----CCh-hhHHHHHHHHHcCCChHHHHHHHccCCC--CC------chhHHHHHHHH
Q 007573 118 MIAGCIDNDRIDDAFDYFQAMPE----RNT-ATYNAMISGFLKHGRLEEATRLFEQMPR--RN------VISYTAMLDGF 184 (597)
Q Consensus 118 ll~~~~~~~~~~~A~~~~~~~~~----~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~------~~~~~~li~~~ 184 (597)
|.+-|.......+|+..++-+.. ||. ..-..+.+.+.+...+.+|++.++-... |+ ....+.+.-.+
T Consensus 207 laqqy~~ndm~~ealntyeiivknkmf~nag~lkmnigni~~kkr~fskaikfyrmaldqvpsink~~rikil~nigvtf 286 (840)
T KOG2003|consen 207 LAQQYEANDMTAEALNTYEIIVKNKMFPNAGILKMNIGNIHFKKREFSKAIKFYRMALDQVPSINKDMRIKILNNIGVTF 286 (840)
T ss_pred HHHHhhhhHHHHHHhhhhhhhhcccccCCCceeeeeecceeeehhhHHHHHHHHHHHHhhccccchhhHHHHHhhcCeeE
Confidence 33445566667788888877662 232 3334456778888899999988765432 21 22455666678
Q ss_pred HhCCChhHHHHHHHhcc--cCCcchHHHHHHHHHcCCChHHHHHHHhhcCCCC--------------CCchHHHH-----
Q 007573 185 MKKGEVDKARALSDYMS--FKNVVSWTVMITGYVKNERFCEARELFYRMPDYD--------------KNVFVVTA----- 243 (597)
Q Consensus 185 ~~~g~~~~A~~~~~~m~--~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~--------------~~~~~~~~----- 243 (597)
.+.|.++.|+..|+... .|+-.+-..|+-++...|+.++..+.|..+..++ |+....+.
T Consensus 287 iq~gqy~dainsfdh~m~~~pn~~a~~nl~i~~f~i~d~ekmkeaf~kli~ip~~~dddkyi~~~ddp~~~ll~eai~nd 366 (840)
T KOG2003|consen 287 IQAGQYDDAINSFDHCMEEAPNFIAALNLIICAFAIGDAEKMKEAFQKLIDIPGEIDDDKYIKEKDDPDDNLLNEAIKND 366 (840)
T ss_pred EecccchhhHhhHHHHHHhCccHHhhhhhhhhheecCcHHHHHHHHHHHhcCCCCCCcccccCCcCCcchHHHHHHHhhH
Confidence 88999999999998874 4666665566667777899999999998887621 22222221
Q ss_pred HHHHHHhcC--CHHHHHHHHhhcC----CCChh---HH----------H--------HHHHHHHHcCChhHHHHHHHHhH
Q 007573 244 MITGFCKVG--MLENARLLFERIQ----PKDCV---SF----------N--------AMIAGYAQNGVAEEALRLFSGMI 296 (597)
Q Consensus 244 l~~~~~~~g--~~~~A~~~~~~~~----~~~~~---~~----------~--------~li~~~~~~g~~~~A~~~~~~m~ 296 (597)
.+.-.-+.. +.++++-.--++. .+|-. -| . .-...|.++|+++.|+++++-..
T Consensus 367 ~lk~~ek~~ka~aek~i~ta~kiiapvi~~~fa~g~dwcle~lk~s~~~~la~dlei~ka~~~lk~~d~~~aieilkv~~ 446 (840)
T KOG2003|consen 367 HLKNMEKENKADAEKAIITAAKIIAPVIAPDFAAGCDWCLESLKASQHAELAIDLEINKAGELLKNGDIEGAIEILKVFE 446 (840)
T ss_pred HHHHHHHhhhhhHHHHHHHHHHHhccccccchhcccHHHHHHHHHhhhhhhhhhhhhhHHHHHHhccCHHHHHHHHHHHH
Confidence 122222221 1222222222222 22210 01 1 11234788999999999998887
Q ss_pred HCCCCCCHHHHH--HHHHHHhccchhHHHHHHHHHHHHhCCCCcccHHHHHHHHHHhcCCHHHHHHHHhccCCCChhhHH
Q 007573 297 KMDMQPDDATLV--SVFTACSALQLLNEGRQSHVLVIRNGFEANVSVCNAVITMYSRCGGILDSELAFRQIHSPNLVSWN 374 (597)
Q Consensus 297 ~~g~~p~~~~~~--~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 374 (597)
+..-+.-...-+ ..+.-+-...++..|.++-+..+... ..+......-.+.....|++++|.+.+++....|...-.
T Consensus 447 ~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~d-ryn~~a~~nkgn~~f~ngd~dka~~~ykeal~ndasc~e 525 (840)
T KOG2003|consen 447 KKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNID-RYNAAALTNKGNIAFANGDLDKAAEFYKEALNNDASCTE 525 (840)
T ss_pred hccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhccc-ccCHHHhhcCCceeeecCcHHHHHHHHHHHHcCchHHHH
Confidence 654332222222 22222223456777777766665433 222222222223334569999999999999876655433
Q ss_pred HH---HHHHHHcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChHHHHHHHHHH
Q 007573 375 TI---IAAFAQHGHYEKALIFFSQMGLNGFDPDGITFLSLLSACGHAGKVNESMDLFELMVKVYGIIPSSEHYTCLVDIL 451 (597)
Q Consensus 375 ~l---i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~ 451 (597)
++ ...+-..|+.++|++.|-++..- +..+......+...|....+..+|++++-+... -++.|+.....|.+.|
T Consensus 526 alfniglt~e~~~~ldeald~f~klh~i-l~nn~evl~qianiye~led~aqaie~~~q~~s--lip~dp~ilskl~dly 602 (840)
T KOG2003|consen 526 ALFNIGLTAEALGNLDEALDCFLKLHAI-LLNNAEVLVQIANIYELLEDPAQAIELLMQANS--LIPNDPAILSKLADLY 602 (840)
T ss_pred HHHHhcccHHHhcCHHHHHHHHHHHHHH-HHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhcc--cCCCCHHHHHHHHHHh
Confidence 33 33466789999999999887642 345667778888899999999999999877653 4555689999999999
Q ss_pred hhcCCHHHHHHHH-hhCC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCcHHHHHH
Q 007573 452 SRAGQLEKAWQIT-QGMP-FEADTGVWGSLLAACVINLNVELGELAAKKMRELDPQNSAVYVMLSNLYAAAGMWRDVTRV 529 (597)
Q Consensus 452 ~~~g~~~~A~~~~-~~~~-~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~ 529 (597)
-+.|+...|.+.. +... ++-+..+..-|..-|....-.++++.+|+++--+.|+.......++.++.+.|++.+|.++
T Consensus 603 dqegdksqafq~~ydsyryfp~nie~iewl~ayyidtqf~ekai~y~ekaaliqp~~~kwqlmiasc~rrsgnyqka~d~ 682 (840)
T KOG2003|consen 603 DQEGDKSQAFQCHYDSYRYFPCNIETIEWLAAYYIDTQFSEKAINYFEKAALIQPNQSKWQLMIASCFRRSGNYQKAFDL 682 (840)
T ss_pred hcccchhhhhhhhhhcccccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHhcccHHHHHHH
Confidence 9999999999975 4455 5556777777777788887889999999999999999888788889999999999999999
Q ss_pred HHHHHhCC
Q 007573 530 RLLMKEQG 537 (597)
Q Consensus 530 ~~~~~~~~ 537 (597)
|+.+.++-
T Consensus 683 yk~~hrkf 690 (840)
T KOG2003|consen 683 YKDIHRKF 690 (840)
T ss_pred HHHHHHhC
Confidence 99987654
No 37
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.63 E-value=6.5e-12 Score=117.03 Aligned_cols=359 Identities=11% Similarity=0.008 Sum_probs=248.8
Q ss_pred CCcchHHHHHHHHHcCCChHHHHHHHhhcCCCCC-CchHHHHHHHHHHhcCCHHHHHHHHhhcCCCChh-HHHHHHHHHH
Q 007573 203 KNVVSWTVMITGYVKNERFCEARELFYRMPDYDK-NVFVVTAMITGFCKVGMLENARLLFERIQPKDCV-SFNAMIAGYA 280 (597)
Q Consensus 203 ~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~li~~~~ 280 (597)
.|...+-.....+-+.|....|+..+.......| ....|..|.. -..+.+.+..+...+...+.. .--.+..++.
T Consensus 162 ~D~fllYL~Gvv~k~~~~~s~A~~sfv~~v~~~P~~W~AWleL~~---lit~~e~~~~l~~~l~~~~h~M~~~F~~~a~~ 238 (559)
T KOG1155|consen 162 KDEFLLYLYGVVLKELGLLSLAIDSFVEVVNRYPWFWSAWLELSE---LITDIEILSILVVGLPSDMHWMKKFFLKKAYQ 238 (559)
T ss_pred chhHHHHHHHHHHHhhchHHHHHHHHHHHHhcCCcchHHHHHHHH---hhchHHHHHHHHhcCcccchHHHHHHHHHHHH
Confidence 3444445555566677888888887776655222 3333433333 334455554444444433222 1123445566
Q ss_pred HcCChhHHHHHHHHhHHCCCCCCHHHHHHHHHHHhccchhHHHHHHHHHHHHhCC--CCcccHHHHHHHHHHhcCCHHH-
Q 007573 281 QNGVAEEALRLFSGMIKMDMQPDDATLVSVFTACSALQLLNEGRQSHVLVIRNGF--EANVSVCNAVITMYSRCGGILD- 357 (597)
Q Consensus 281 ~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~- 357 (597)
.....++++.-.......|+.-....-+....+.-...++++|+.+|+++.+... -.|..+|..++..-..+.++.-
T Consensus 239 el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~~skLs~L 318 (559)
T KOG1155|consen 239 ELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKNDKSKLSYL 318 (559)
T ss_pred HHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhhhHHHHHH
Confidence 6667888888888888877665555544555555677899999999999988742 1256667666544333222222
Q ss_pred HHHHHhccCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC-hHHHHHHHHHHhccCcHHHHHHHHHHhHHhcC
Q 007573 358 SELAFRQIHSPNLVSWNTIIAAFAQHGHYEKALIFFSQMGLNGFDPD-GITFLSLLSACGHAGKVNESMDLFELMVKVYG 436 (597)
Q Consensus 358 A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~ 436 (597)
|..++ .+.+--+.|..++..-|.-.++.++|+..|++..+. .|. ...|+.+.+-|....+...|.+.++.+++.
T Consensus 319 A~~v~-~idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkL--Np~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi-- 393 (559)
T KOG1155|consen 319 AQNVS-NIDKYRPETCCIIANYYSLRSEHEKAVMYFKRALKL--NPKYLSAWTLMGHEYVEMKNTHAAIESYRRAVDI-- 393 (559)
T ss_pred HHHHH-HhccCCccceeeehhHHHHHHhHHHHHHHHHHHHhc--CcchhHHHHHhhHHHHHhcccHHHHHHHHHHHhc--
Confidence 22222 233344567777778888899999999999999875 454 456777788899999999999999998852
Q ss_pred CCCChHHHHHHHHHHhhcCCHHHHHHHHhhCC-CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHH
Q 007573 437 IIPSSEHYTCLVDILSRAGQLEKAWQITQGMP-FEA-DTGVWGSLLAACVINLNVELGELAAKKMRELDPQNSAVYVMLS 514 (597)
Q Consensus 437 ~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~ 514 (597)
-+.|-..|-.|..+|.-.+.+.-|+-+|++.. .+| |...|.+|+..|.+.++.++|++.|.+++..+..+..++..|+
T Consensus 394 ~p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dte~~~l~~La 473 (559)
T KOG1155|consen 394 NPRDYRAWYGLGQAYEIMKMHFYALYYFQKALELKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDTEGSALVRLA 473 (559)
T ss_pred CchhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhccccchHHHHHHH
Confidence 23467889999999999999999999999876 455 7889999999999999999999999999999888899999999
Q ss_pred HHHHhcCCcHHHHHHHHHHHhCCCccCCCeeEEEECCEEEEEEeCCCCCcchHHHHHHHHHHHHHHhhcCCccc
Q 007573 515 NLYAAAGMWRDVTRVRLLMKEQGVTKQCAYSWIEIGNKVHYFLGGDMSHPCIDKIHLELKRASVQMKSVDDFVE 588 (597)
Q Consensus 515 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~~~ 588 (597)
++|-+.++.++|...+++-.+.-. .. ....|+..++...|..-..+++..+..+.
T Consensus 474 kLye~l~d~~eAa~~yek~v~~~~--~e-----------------g~~~~~t~ka~~fLA~~f~k~~~~~~As~ 528 (559)
T KOG1155|consen 474 KLYEELKDLNEAAQYYEKYVEVSE--LE-----------------GEIDDETIKARLFLAEYFKKMKDFDEASY 528 (559)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHH--hh-----------------cccchHHHHHHHHHHHHHHhhcchHHHHH
Confidence 999999999999999998776210 00 01245555666666666666655554443
No 38
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.59 E-value=1.5e-12 Score=129.16 Aligned_cols=283 Identities=10% Similarity=0.015 Sum_probs=200.5
Q ss_pred CCChhHHHHHHHhcccC--Cc-chHHHHHHHHHcCCChHHHHHHHhhcCCCCCCchHHH--HHHHHHHhcCCHHHHHHHH
Q 007573 187 KGEVDKARALSDYMSFK--NV-VSWTVMITGYVKNERFCEARELFYRMPDYDKNVFVVT--AMITGFCKVGMLENARLLF 261 (597)
Q Consensus 187 ~g~~~~A~~~~~~m~~~--~~-~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~--~l~~~~~~~g~~~~A~~~~ 261 (597)
.|++++|.+.+...... ++ ..|.....+..+.|+++.|...+.++.+..|+..... .....+...|+++.|...+
T Consensus 97 eGd~~~A~k~l~~~~~~~~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~~~~~~~~~~l~~a~l~l~~g~~~~Al~~l 176 (398)
T PRK10747 97 EGDYQQVEKLMTRNADHAEQPVVNYLLAAEAAQQRGDEARANQHLERAAELADNDQLPVEITRVRIQLARNENHAARHGV 176 (398)
T ss_pred CCCHHHHHHHHHHHHhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 57888887777665332 12 2333334455778888888888888887777765433 3366778888888888888
Q ss_pred hhcCC---CChhHHHHHHHHHHHcCChhHHHHHHHHhHHCCCCCCHHHHHHHHHHHhccchhHHHHHHHHHHHHhCCCCc
Q 007573 262 ERIQP---KDCVSFNAMIAGYAQNGVAEEALRLFSGMIKMDMQPDDATLVSVFTACSALQLLNEGRQSHVLVIRNGFEAN 338 (597)
Q Consensus 262 ~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~ 338 (597)
+++.+ .++.....+...|.+.|++++|.+++..+.+.+..++.. ...+-.
T Consensus 177 ~~~~~~~P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~-~~~l~~-------------------------- 229 (398)
T PRK10747 177 DKLLEVAPRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEH-RAMLEQ-------------------------- 229 (398)
T ss_pred HHHHhcCCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHH-HHHHHH--------------------------
Confidence 87654 456678888888888899999999998888876443221 110000
Q ss_pred ccHHHHHHHHHHhcCCHHHHHHHHhccC---CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHH
Q 007573 339 VSVCNAVITMYSRCGGILDSELAFRQIH---SPNLVSWNTIIAAFAQHGHYEKALIFFSQMGLNGFDPDGITFLSLLSAC 415 (597)
Q Consensus 339 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~ 415 (597)
..|..++....+..+.+...++++.+. +.++.....+...+...|+.++|.+.+++..+. .|+.... ++.+.
T Consensus 230 -~a~~~l~~~~~~~~~~~~l~~~w~~lp~~~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~--~~~~~l~--~l~~~ 304 (398)
T PRK10747 230 -QAWIGLMDQAMADQGSEGLKRWWKNQSRKTRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR--QYDERLV--LLIPR 304 (398)
T ss_pred -HHHHHHHHHHHHhcCHHHHHHHHHhCCHHHhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHH--HHHhh
Confidence 011112222222334455556666554 457778888889999999999999999988874 5555322 23344
Q ss_pred hccCcHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHhhCC-CCCCHHHHHHHHHHHHhcCCHHHHHH
Q 007573 416 GHAGKVNESMDLFELMVKVYGIIPSSEHYTCLVDILSRAGQLEKAWQITQGMP-FEADTGVWGSLLAACVINLNVELGEL 494 (597)
Q Consensus 416 ~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p~~~~~~~l~~~~~~~g~~~~a~~ 494 (597)
...++.+++.+..+...+. .+-|+..+.++...+.+.|++++|.+.|+... ..|+...+..+...+.+.|+.++|.+
T Consensus 305 l~~~~~~~al~~~e~~lk~--~P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~~P~~~~~~~La~~~~~~g~~~~A~~ 382 (398)
T PRK10747 305 LKTNNPEQLEKVLRQQIKQ--HGDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQRPDAYDYAWLADALDRLHKPEEAAA 382 (398)
T ss_pred ccCCChHHHHHHHHHHHhh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHH
Confidence 4568999999999988864 34457778889999999999999999999876 77999998899999999999999999
Q ss_pred HHHHHHhcC
Q 007573 495 AAKKMRELD 503 (597)
Q Consensus 495 ~~~~~~~~~ 503 (597)
++++.+.+-
T Consensus 383 ~~~~~l~~~ 391 (398)
T PRK10747 383 MRRDGLMLT 391 (398)
T ss_pred HHHHHHhhh
Confidence 999998754
No 39
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=99.58 E-value=3e-10 Score=110.24 Aligned_cols=472 Identities=14% Similarity=0.163 Sum_probs=301.2
Q ss_pred CCCcchHHHHHHHHHhcCChHHHHHHHhhcCC-----CCcchHHHHHHHHHhCCChhHHHHHHhhCCCCCcchHHHHHHH
Q 007573 47 TQYVFVNNAKISALSRAGKISAARQLFDQMTT-----KDVITWNAIITGYWQNGFLQESKNLFQSMPVKNIVSWNCMIAG 121 (597)
Q Consensus 47 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ll~~ 121 (597)
+.-+.+|-..++.+.++|++..-+..|++... .....|...+.-....|-++-++++|++..+-++..-+-.|..
T Consensus 99 HkmpRIwl~Ylq~l~~Q~~iT~tR~tfdrALraLpvtqH~rIW~lyl~Fv~~~~lPets~rvyrRYLk~~P~~~eeyie~ 178 (835)
T KOG2047|consen 99 HKMPRIWLDYLQFLIKQGLITRTRRTFDRALRALPVTQHDRIWDLYLKFVESHGLPETSIRVYRRYLKVAPEAREEYIEY 178 (835)
T ss_pred hcCCHHHHHHHHHHHhcchHHHHHHHHHHHHHhCchHhhccchHHHHHHHHhCCChHHHHHHHHHHHhcCHHHHHHHHHH
Confidence 56677888889999999999999999998754 3445788889888889999999999999998888888899999
Q ss_pred HHcCCChHHHHHHHccCCC----------CCh--------------------------------------hhHHHHHHHH
Q 007573 122 CIDNDRIDDAFDYFQAMPE----------RNT--------------------------------------ATYNAMISGF 153 (597)
Q Consensus 122 ~~~~~~~~~A~~~~~~~~~----------~~~--------------------------------------~~~~~l~~~~ 153 (597)
++..+++++|.+.+..... .+. ..|.+|..-|
T Consensus 179 L~~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~rftDq~g~Lw~SLAdYY 258 (835)
T KOG2047|consen 179 LAKSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIRRFTDQLGFLWCSLADYY 258 (835)
T ss_pred HHhccchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhcccCcHHHHHHHHHHHHHH
Confidence 9999999999988888761 111 2355666666
Q ss_pred HcCCChHHHHHHHccCCCC--CchhHHHHHHHHHhC----------------CC------hhHHHHHHHhcc--------
Q 007573 154 LKHGRLEEATRLFEQMPRR--NVISYTAMLDGFMKK----------------GE------VDKARALSDYMS-------- 201 (597)
Q Consensus 154 ~~~g~~~~A~~~~~~~~~~--~~~~~~~li~~~~~~----------------g~------~~~A~~~~~~m~-------- 201 (597)
.+.|++++|..+|++..+. .+.-++.+.+.|+.. |+ ++-.+.-|+.+.
T Consensus 259 Ir~g~~ekarDvyeeai~~v~tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a~~e~lm~rr~~~lN 338 (835)
T KOG2047|consen 259 IRSGLFEKARDVYEEAIQTVMTVRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVDLELHMARFESLMNRRPLLLN 338 (835)
T ss_pred HHhhhhHHHHHHHHHHHHhheehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHHHHHHHHHHHHhccchHHH
Confidence 6666666666666654431 122222222222211 11 111111222221
Q ss_pred -------cCCcchHHHHHHHHHcCCChHHHHHHHhhcCC-CCCC------chHHHHHHHHHHhcCCHHHHHHHHhhcCCC
Q 007573 202 -------FKNVVSWTVMITGYVKNERFCEARELFYRMPD-YDKN------VFVVTAMITGFCKVGMLENARLLFERIQPK 267 (597)
Q Consensus 202 -------~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~-~~~~------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 267 (597)
..++..|..... ...|+..+-...|.++.+ ++|. ...|..+...|-..|+++.|..+|++..+-
T Consensus 339 sVlLRQn~~nV~eW~kRV~--l~e~~~~~~i~tyteAv~~vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~~V 416 (835)
T KOG2047|consen 339 SVLLRQNPHNVEEWHKRVK--LYEGNAAEQINTYTEAVKTVDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEKATKV 416 (835)
T ss_pred HHHHhcCCccHHHHHhhhh--hhcCChHHHHHHHHHHHHccCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHhhcC
Confidence 112222322222 224556666666666544 3332 335788999999999999999999997763
Q ss_pred C-------hhHHHHHHHHHHHcCChhHHHHHHHHhHHCCCC----------C-CH------HHHHHHHHHHhccchhHHH
Q 007573 268 D-------CVSFNAMIAGYAQNGVAEEALRLFSGMIKMDMQ----------P-DD------ATLVSVFTACSALQLLNEG 323 (597)
Q Consensus 268 ~-------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~----------p-~~------~~~~~ll~~~~~~~~~~~a 323 (597)
+ ..+|......=.++.+++.|++++++...-.-. | .. ..|...+..--..|-++..
T Consensus 417 ~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfest 496 (835)
T KOG2047|consen 417 PYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGTFEST 496 (835)
T ss_pred CccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHHHH
Confidence 2 136666666677788899999988876532111 1 11 1233334444466788888
Q ss_pred HHHHHHHHHhCCCCcccHHHHHHHHHHhcCCHHHHHHHHhccC----CCCh-hhHHHHHHHHHH---cCCHHHHHHHHHH
Q 007573 324 RQSHVLVIRNGFEANVSVCNAVITMYSRCGGILDSELAFRQIH----SPNL-VSWNTIIAAFAQ---HGHYEKALIFFSQ 395 (597)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~----~~~~-~~~~~li~~~~~---~g~~~~A~~~~~~ 395 (597)
+.+++.+++..+.....+. .....+-...-++++.+++++-. .|++ ..|+..+.-+.+ .-..+.|..+|++
T Consensus 497 k~vYdriidLriaTPqii~-NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~klEraRdLFEq 575 (835)
T KOG2047|consen 497 KAVYDRIIDLRIATPQIII-NYAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLERARDLFEQ 575 (835)
T ss_pred HHHHHHHHHHhcCCHHHHH-HHHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCHHHHHHHHHH
Confidence 8999999888754333222 23334555667899999998876 3554 378877766554 3468999999999
Q ss_pred HHHCCCCCChHHHHHHHHH--HhccCcHHHHHHHHHHhHHhcCCCCC--hHHHHHHHHHHhhcCCHHHHHHHHhhCC-CC
Q 007573 396 MGLNGFDPDGITFLSLLSA--CGHAGKVNESMDLFELMVKVYGIIPS--SEHYTCLVDILSRAGQLEKAWQITQGMP-FE 470 (597)
Q Consensus 396 m~~~g~~p~~~~~~~ll~~--~~~~g~~~~a~~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~ 470 (597)
..+ |.+|...-+..++-+ -.+-|....|+.+++++.. ++++. ...|+..|.--+..=-+..-..+|++.. .=
T Consensus 576 aL~-~Cpp~~aKtiyLlYA~lEEe~GLar~amsiyerat~--~v~~a~~l~myni~I~kaae~yGv~~TR~iYekaIe~L 652 (835)
T KOG2047|consen 576 ALD-GCPPEHAKTIYLLYAKLEEEHGLARHAMSIYERATS--AVKEAQRLDMYNIYIKKAAEIYGVPRTREIYEKAIESL 652 (835)
T ss_pred HHh-cCCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHh--cCCHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHHhC
Confidence 998 777775433333322 2355888999999999765 56554 4567766643332222223333443332 22
Q ss_pred CCHHH---HHHHHHHHHhcCCHHHHHHHHHHHHhcC-CCC-CchHHHHHHHHHhcCCcH
Q 007573 471 ADTGV---WGSLLAACVINLNVELGELAAKKMRELD-PQN-SAVYVMLSNLYAAAGMWR 524 (597)
Q Consensus 471 p~~~~---~~~l~~~~~~~g~~~~a~~~~~~~~~~~-p~~-~~~~~~l~~~~~~~g~~~ 524 (597)
|+..+ ...+...-.+.|..++|..+|...-++- |.. ...+...-..-.+.|+-+
T Consensus 653 p~~~~r~mclrFAdlEtklGEidRARaIya~~sq~~dPr~~~~fW~twk~FEvrHGned 711 (835)
T KOG2047|consen 653 PDSKAREMCLRFADLETKLGEIDRARAIYAHGSQICDPRVTTEFWDTWKEFEVRHGNED 711 (835)
T ss_pred ChHHHHHHHHHHHHHhhhhhhHHHHHHHHHhhhhcCCCcCChHHHHHHHHHHHhcCCHH
Confidence 44333 2233344567888999999988887764 443 666777777778888833
No 40
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.57 E-value=1.2e-11 Score=122.76 Aligned_cols=214 Identities=9% Similarity=-0.004 Sum_probs=147.1
Q ss_pred HhccchhHHHHHHHHHHHHhCCCCcccHHHHHHHHHHhcCCHHHHHHHHhccCC---CCh--------hhHHHHHHHHHH
Q 007573 314 CSALQLLNEGRQSHVLVIRNGFEANVSVCNAVITMYSRCGGILDSELAFRQIHS---PNL--------VSWNTIIAAFAQ 382 (597)
Q Consensus 314 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~--------~~~~~li~~~~~ 382 (597)
+...|+.+.|...++.+.+.. |.++.+...+...|.+.|++++|.+++..+.+ .+. .+|..++.....
T Consensus 163 ~l~~g~~~~Al~~l~~~~~~~-P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~ 241 (398)
T PRK10747 163 QLARNENHAARHGVDKLLEVA-PRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMA 241 (398)
T ss_pred HHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444433 33444555555555555666665555555441 111 133333444444
Q ss_pred cCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHH
Q 007573 383 HGHYEKALIFFSQMGLNGFDPDGITFLSLLSACGHAGKVNESMDLFELMVKVYGIIPSSEHYTCLVDILSRAGQLEKAWQ 462 (597)
Q Consensus 383 ~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~ 462 (597)
..+.+...++++.+.+. .+.++.....+..++...|+.++|.+++++..+. .|+.... ++.+....++.+++.+
T Consensus 242 ~~~~~~l~~~w~~lp~~-~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~---~~~~~l~--~l~~~l~~~~~~~al~ 315 (398)
T PRK10747 242 DQGSEGLKRWWKNQSRK-TRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR---QYDERLV--LLIPRLKTNNPEQLEK 315 (398)
T ss_pred hcCHHHHHHHHHhCCHH-HhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc---CCCHHHH--HHHhhccCCChHHHHH
Confidence 55566666777666432 2456778888999999999999999999988753 4555322 2334445699999999
Q ss_pred HHhhCC-CCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCcHHHHHHHHHHHh
Q 007573 463 ITQGMP-FEAD-TGVWGSLLAACVINLNVELGELAAKKMRELDPQNSAVYVMLSNLYAAAGMWRDVTRVRLLMKE 535 (597)
Q Consensus 463 ~~~~~~-~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 535 (597)
..++.. ..|+ +..+..+...|...|++++|.+.|+++++..|++. .+..++.++.+.|+.++|.+++++-..
T Consensus 316 ~~e~~lk~~P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~~P~~~-~~~~La~~~~~~g~~~~A~~~~~~~l~ 389 (398)
T PRK10747 316 VLRQQIKQHGDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQRPDAY-DYAWLADALDRLHKPEEAAAMRRDGLM 389 (398)
T ss_pred HHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCHH-HHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 998776 4554 55788899999999999999999999999999854 477899999999999999999998755
No 41
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.56 E-value=1.9e-11 Score=122.04 Aligned_cols=285 Identities=12% Similarity=-0.000 Sum_probs=139.1
Q ss_pred hCCChhHHHHHHHhccc--CCc-chHHHHHHHHHcCCChHHHHHHHhhcCCCCCCch--HHHHHHHHHHhcCCHHHHHHH
Q 007573 186 KKGEVDKARALSDYMSF--KNV-VSWTVMITGYVKNERFCEARELFYRMPDYDKNVF--VVTAMITGFCKVGMLENARLL 260 (597)
Q Consensus 186 ~~g~~~~A~~~~~~m~~--~~~-~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~--~~~~l~~~~~~~g~~~~A~~~ 260 (597)
..|+++.|.+.+.+... |+. ..+-....+....|+.+.|.+.+..+.+..|+.. +.......+...|+++.|...
T Consensus 96 ~~g~~~~A~~~l~~~~~~~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~~Al~~ 175 (409)
T TIGR00540 96 AEGDYAKAEKLIAKNADHAAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQNELHAARHG 175 (409)
T ss_pred hCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHHHHHHH
Confidence 35666666666655522 221 2233334455556666666666666555444432 223345555566666666666
Q ss_pred HhhcCC---CChhHHHHHHHHHHHcCChhHHHHHHHHhHHCCCCCCHHHHHHHHHHHhccchhHHHHHHHHHHHHhCCCC
Q 007573 261 FERIQP---KDCVSFNAMIAGYAQNGVAEEALRLFSGMIKMDMQPDDATLVSVFTACSALQLLNEGRQSHVLVIRNGFEA 337 (597)
Q Consensus 261 ~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~ 337 (597)
++.+.+ .++..+..+...+...|++++|.+.+..+.+.++.++. .+..+-.
T Consensus 176 l~~l~~~~P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~-~~~~l~~------------------------- 229 (409)
T TIGR00540 176 VDKLLEMAPRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDE-EFADLEQ------------------------- 229 (409)
T ss_pred HHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHH-HHHHHHH-------------------------
Confidence 655442 24445556666666666666666666666655432211 1110000
Q ss_pred cccHHHHHHHHHHhcCCHHHHHHHHhccC---CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCChHH--H-HHH
Q 007573 338 NVSVCNAVITMYSRCGGILDSELAFRQIH---SPNLVSWNTIIAAFAQHGHYEKALIFFSQMGLNGFDPDGIT--F-LSL 411 (597)
Q Consensus 338 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~--~-~~l 411 (597)
..+..++..-......+.....++..+ +.+...+..++..+...|+.++|.+.+++..+. .||... + ...
T Consensus 230 --~a~~~~l~~~~~~~~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~--~pd~~~~~~~~l~ 305 (409)
T TIGR00540 230 --KAEIGLLDEAMADEGIDGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKK--LGDDRAISLPLCL 305 (409)
T ss_pred --HHHHHHHHHHHHhcCHHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhh--CCCcccchhHHHH
Confidence 000000111111112233333444443 236667777777777778888888887777764 333321 1 111
Q ss_pred HHHHhccCcHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHhh--C-CCCCCHHHHHHHHHHHHhcCC
Q 007573 412 LSACGHAGKVNESMDLFELMVKVYGIIPSSEHYTCLVDILSRAGQLEKAWQITQG--M-PFEADTGVWGSLLAACVINLN 488 (597)
Q Consensus 412 l~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~--~-~~~p~~~~~~~l~~~~~~~g~ 488 (597)
.......++.+.+.+.++...+..+-.|+.....++...+.+.|++++|.+.|+. . ...|+...+..+...+.+.|+
T Consensus 306 ~~~~l~~~~~~~~~~~~e~~lk~~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~~g~ 385 (409)
T TIGR00540 306 PIPRLKPEDNEKLEKLIEKQAKNVDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFDQAGD 385 (409)
T ss_pred HhhhcCCCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHHcCC
Confidence 1112233555666666655554322212113444555555555555555555552 2 134555555555555555555
Q ss_pred HHHHHHHHHHHH
Q 007573 489 VELGELAAKKMR 500 (597)
Q Consensus 489 ~~~a~~~~~~~~ 500 (597)
.++|.+++++.+
T Consensus 386 ~~~A~~~~~~~l 397 (409)
T TIGR00540 386 KAEAAAMRQDSL 397 (409)
T ss_pred HHHHHHHHHHHH
Confidence 555555555544
No 42
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.56 E-value=4.9e-11 Score=111.32 Aligned_cols=354 Identities=12% Similarity=0.047 Sum_probs=251.1
Q ss_pred CCchhHHHHHHHHHhCCChhHHHHHHHhcccCCcchHHHHHHHHHcCCChHHHHHHHhhcCCCCCCchHHHHHHHHHHhc
Q 007573 172 RNVISYTAMLDGFMKKGEVDKARALSDYMSFKNVVSWTVMITGYVKNERFCEARELFYRMPDYDKNVFVVTAMITGFCKV 251 (597)
Q Consensus 172 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~ 251 (597)
.|...+-.....+.+.|..+.|+..|...+..-+..|.+.+....-.-+.+.+..+...... +.....---+..++-..
T Consensus 162 ~D~fllYL~Gvv~k~~~~~s~A~~sfv~~v~~~P~~W~AWleL~~lit~~e~~~~l~~~l~~-~~h~M~~~F~~~a~~el 240 (559)
T KOG1155|consen 162 KDEFLLYLYGVVLKELGLLSLAIDSFVEVVNRYPWFWSAWLELSELITDIEILSILVVGLPS-DMHWMKKFFLKKAYQEL 240 (559)
T ss_pred chhHHHHHHHHHHHhhchHHHHHHHHHHHHhcCCcchHHHHHHHHhhchHHHHHHHHhcCcc-cchHHHHHHHHHHHHHH
Confidence 34443444445566778888999988888776666666666555444455444443332221 00111112344556666
Q ss_pred CCHHHHHHHHhhcCC----CChhHHHHHHHHHHHcCChhHHHHHHHHhHHCCC--CCCHHHHHHHHHHHhccchhHHHHH
Q 007573 252 GMLENARLLFERIQP----KDCVSFNAMIAGYAQNGVAEEALRLFSGMIKMDM--QPDDATLVSVFTACSALQLLNEGRQ 325 (597)
Q Consensus 252 g~~~~A~~~~~~~~~----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~--~p~~~~~~~ll~~~~~~~~~~~a~~ 325 (597)
.+.+++..-.+.... .+...-+....+...+.++++|+.+|+++.+... --|..+|+.++-.-.....+.-
T Consensus 241 ~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~~skLs~--- 317 (559)
T KOG1155|consen 241 HQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKNDKSKLSY--- 317 (559)
T ss_pred HHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhhhHHHHH---
Confidence 666776665555443 2333334444556677899999999999988631 1256777777655433222211
Q ss_pred HHHHHHHhCCCCcccHHHHHHHHHHhcCCHHHHHHHHhccC---CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCC
Q 007573 326 SHVLVIRNGFEANVSVCNAVITMYSRCGGILDSELAFRQIH---SPNLVSWNTIIAAFAQHGHYEKALIFFSQMGLNGFD 402 (597)
Q Consensus 326 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~ 402 (597)
+.+-.-.--+.-+.|+..+.+-|.-.++.++|...|++.. +.....|+.|.+-|....+...|++-+++.++-. +
T Consensus 318 -LA~~v~~idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLNp~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~-p 395 (559)
T KOG1155|consen 318 -LAQNVSNIDKYRPETCCIIANYYSLRSEHEKAVMYFKRALKLNPKYLSAWTLMGHEYVEMKNTHAAIESYRRAVDIN-P 395 (559)
T ss_pred -HHHHHHHhccCCccceeeehhHHHHHHhHHHHHHHHHHHHhcCcchhHHHHHhhHHHHHhcccHHHHHHHHHHHhcC-c
Confidence 1111111124456788888899999999999999999887 3445689999999999999999999999998753 5
Q ss_pred CChHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCC-ChHHHHHHHHHHhhcCCHHHHHHHHhhCC--CCCCHHHHHHH
Q 007573 403 PDGITFLSLLSACGHAGKVNESMDLFELMVKVYGIIP-SSEHYTCLVDILSRAGQLEKAWQITQGMP--FEADTGVWGSL 479 (597)
Q Consensus 403 p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l 479 (597)
.|-..|..+.++|.-.+.+.=|+-+|++..+ .+| |+..|.+|.+.|.+.++.++|++.|.+.. .+.+...+..|
T Consensus 396 ~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~---~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dte~~~l~~L 472 (559)
T KOG1155|consen 396 RDYRAWYGLGQAYEIMKMHFYALYYFQKALE---LKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDTEGSALVRL 472 (559)
T ss_pred hhHHHHhhhhHHHHHhcchHHHHHHHHHHHh---cCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhccccchHHHHHH
Confidence 5778999999999999999999999998874 445 58999999999999999999999999876 33455789999
Q ss_pred HHHHHhcCCHHHHHHHHHHHHh-------cCCCCCchHHHHHHHHHhcCCcHHHHHHHHHHH
Q 007573 480 LAACVINLNVELGELAAKKMRE-------LDPQNSAVYVMLSNLYAAAGMWRDVTRVRLLMK 534 (597)
Q Consensus 480 ~~~~~~~g~~~~a~~~~~~~~~-------~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 534 (597)
...+.+.++.++|...+++-++ .+|+-..+...|+.-+.+.+++++|..+-....
T Consensus 473 akLye~l~d~~eAa~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~~~~ 534 (559)
T KOG1155|consen 473 AKLYEELKDLNEAAQYYEKYVEVSELEGEIDDETIKARLFLAEYFKKMKDFDEASYYATLVL 534 (559)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcchHHHHHHHHHHh
Confidence 9999999999999999999887 334335556678888999999999988766544
No 43
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.53 E-value=1.8e-12 Score=126.40 Aligned_cols=276 Identities=14% Similarity=0.041 Sum_probs=216.5
Q ss_pred CHHHHHHHHhhcCCC--C-hhHHHHHHHHHHHcCChhHHHHHHHHhHHCC--CCCCHHHHHHHHHHHhccchhHHHHHHH
Q 007573 253 MLENARLLFERIQPK--D-CVSFNAMIAGYAQNGVAEEALRLFSGMIKMD--MQPDDATLVSVFTACSALQLLNEGRQSH 327 (597)
Q Consensus 253 ~~~~A~~~~~~~~~~--~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g--~~p~~~~~~~ll~~~~~~~~~~~a~~~~ 327 (597)
+.++|...|..++.. | ......+..+|...+++++|.++|+...+.. ..-+..+|.+.+.-+-.. -+..++
T Consensus 334 ~~~~A~~~~~klp~h~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~----v~Ls~L 409 (638)
T KOG1126|consen 334 NCREALNLFEKLPSHHYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDE----VALSYL 409 (638)
T ss_pred HHHHHHHHHHhhHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhh----HHHHHH
Confidence 567888888886542 2 3456678889999999999999999988753 122556777766543221 112222
Q ss_pred -HHHHHhCCCCcccHHHHHHHHHHhcCCHHHHHHHHhccCCC---ChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC
Q 007573 328 -VLVIRNGFEANVSVCNAVITMYSRCGGILDSELAFRQIHSP---NLVSWNTIIAAFAQHGHYEKALIFFSQMGLNGFDP 403 (597)
Q Consensus 328 -~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 403 (597)
+.+++. .+..+.+|.++.++|.-+++.+.|++.|++.... ...+|+.+..-+....++|.|...|+..+. +.|
T Consensus 410 aq~Li~~-~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~--~~~ 486 (638)
T KOG1126|consen 410 AQDLIDT-DPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLDPRFAYAYTLLGHESIATEEFDKAMKSFRKALG--VDP 486 (638)
T ss_pred HHHHHhh-CCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccCCccchhhhhcCChhhhhHHHHhHHHHHHhhhc--CCc
Confidence 223332 3677899999999999999999999999988743 556888888888889999999999998863 344
Q ss_pred C-hHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCC-hHHHHHHHHHHhhcCCHHHHHHHHhhCC-CCC-CHHHHHHH
Q 007573 404 D-GITFLSLLSACGHAGKVNESMDLFELMVKVYGIIPS-SEHYTCLVDILSRAGQLEKAWQITQGMP-FEA-DTGVWGSL 479 (597)
Q Consensus 404 ~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~l 479 (597)
. -..|..+...|.+.++++.|.-.|+.+. .+.|. ......+...+.+.|+.++|++++++.. .+| |+..--.-
T Consensus 487 rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~---~INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l~~~~~ 563 (638)
T KOG1126|consen 487 RHYNAWYGLGTVYLKQEKLEFAEFHFQKAV---EINPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNPLCKYHR 563 (638)
T ss_pred hhhHHHHhhhhheeccchhhHHHHHHHhhh---cCCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCchhHHHH
Confidence 4 3467778889999999999999999887 56665 6677788899999999999999999875 444 55555556
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCcHHHHHHHHHHHhCCC
Q 007573 480 LAACVINLNVELGELAAKKMRELDPQNSAVYVMLSNLYAAAGMWRDVTRVRLLMKEQGV 538 (597)
Q Consensus 480 ~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 538 (597)
+..+...+++++|...++++.++-|++..++..++..|.+.|+.+.|+.-|-.+.+..+
T Consensus 564 ~~il~~~~~~~eal~~LEeLk~~vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~ldp 622 (638)
T KOG1126|consen 564 ASILFSLGRYVEALQELEELKELVPQESSVFALLGKIYKRLGNTDLALLHFSWALDLDP 622 (638)
T ss_pred HHHHHhhcchHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHccchHHHHhhHHHhcCCC
Confidence 66777889999999999999999999999999999999999999999998888776443
No 44
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.53 E-value=1.1e-12 Score=127.81 Aligned_cols=279 Identities=13% Similarity=0.100 Sum_probs=178.2
Q ss_pred hhHHHHHHHhcc--cCC-cchHHHHHHHHHcCCChHHHHHHHhhcCCCCC----CchHHHHHHHHHHhcCCHHHHHHHHh
Q 007573 190 VDKARALSDYMS--FKN-VVSWTVMITGYVKNERFCEARELFYRMPDYDK----NVFVVTAMITGFCKVGMLENARLLFE 262 (597)
Q Consensus 190 ~~~A~~~~~~m~--~~~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~----~~~~~~~l~~~~~~~g~~~~A~~~~~ 262 (597)
..+|+.+|.... .+| ......+.++|...+++++|+++|+.+.+..| +..+|.+.+--+-+.=.+.---+-+-
T Consensus 335 ~~~A~~~~~klp~h~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~v~Ls~Laq~Li 414 (638)
T KOG1126|consen 335 CREALNLFEKLPSHHYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDEVALSYLAQDLI 414 (638)
T ss_pred HHHHHHHHHhhHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhhHHHHHHHHHHH
Confidence 345555554431 112 23334455555555566666666655555443 33344443332221111111001111
Q ss_pred hcCCCChhHHHHHHHHHHHcCChhHHHHHHHHhHHCCCCCCHHHHHHHHHHHhccchhHHHHHHHHHHHHhCCCCcccHH
Q 007573 263 RIQPKDCVSFNAMIAGYAQNGVAEEALRLFSGMIKMDMQPDDATLVSVFTACSALQLLNEGRQSHVLVIRNGFEANVSVC 342 (597)
Q Consensus 263 ~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 342 (597)
...+..+.+|.++..+|.-+++++.|++.|++..+ .+ +....+|
T Consensus 415 ~~~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQ-----------------------------------ld-p~faYay 458 (638)
T KOG1126|consen 415 DTDPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQ-----------------------------------LD-PRFAYAY 458 (638)
T ss_pred hhCCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhc-----------------------------------cC-Cccchhh
Confidence 11222445555555555555555555555555544 32 2245566
Q ss_pred HHHHHHHHhcCCHHHHHHHHhccCCCChhh---HHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHhccC
Q 007573 343 NAVITMYSRCGGILDSELAFRQIHSPNLVS---WNTIIAAFAQHGHYEKALIFFSQMGLNGFDPDGITFLSLLSACGHAG 419 (597)
Q Consensus 343 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~---~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g 419 (597)
+.+..-+.....+|+|...|+.....|+.. |-.+...|.+.++++.|.-.|++..+-+ +-+.+....+...+.+.|
T Consensus 459 TLlGhE~~~~ee~d~a~~~fr~Al~~~~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~IN-P~nsvi~~~~g~~~~~~k 537 (638)
T KOG1126|consen 459 TLLGHESIATEEFDKAMKSFRKALGVDPRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEIN-PSNSVILCHIGRIQHQLK 537 (638)
T ss_pred hhcCChhhhhHHHHhHHHHHHhhhcCCchhhHHHHhhhhheeccchhhHHHHHHHhhhcCC-ccchhHHhhhhHHHHHhh
Confidence 666666667778888888888877655554 4456778999999999999999988643 334566667777888999
Q ss_pred cHHHHHHHHHHhHHhcCCCC-ChHHHHHHHHHHhhcCCHHHHHHHHhhCC-CCCC-HHHHHHHHHHHHhcCCHHHHHHHH
Q 007573 420 KVNESMDLFELMVKVYGIIP-SSEHYTCLVDILSRAGQLEKAWQITQGMP-FEAD-TGVWGSLLAACVINLNVELGELAA 496 (597)
Q Consensus 420 ~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p~-~~~~~~l~~~~~~~g~~~~a~~~~ 496 (597)
+.++|+++++++.. +.| |+..--..+..+...++.++|+..++++. ..|+ ..++-.++..|.+.|+.+.|+.-|
T Consensus 538 ~~d~AL~~~~~A~~---ld~kn~l~~~~~~~il~~~~~~~eal~~LEeLk~~vP~es~v~~llgki~k~~~~~~~Al~~f 614 (638)
T KOG1126|consen 538 RKDKALQLYEKAIH---LDPKNPLCKYHRASILFSLGRYVEALQELEELKELVPQESSVFALLGKIYKRLGNTDLALLHF 614 (638)
T ss_pred hhhHHHHHHHHHHh---cCCCCchhHHHHHHHHHhhcchHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHccchHHHHhh
Confidence 99999999998874 333 34444556777889999999999999987 5565 557788888999999999999999
Q ss_pred HHHHhcCCCCCc
Q 007573 497 KKMRELDPQNSA 508 (597)
Q Consensus 497 ~~~~~~~p~~~~ 508 (597)
.-|.+++|+-..
T Consensus 615 ~~A~~ldpkg~~ 626 (638)
T KOG1126|consen 615 SWALDLDPKGAQ 626 (638)
T ss_pred HHHhcCCCccch
Confidence 999999998543
No 45
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.53 E-value=1.4e-10 Score=107.20 Aligned_cols=223 Identities=14% Similarity=0.169 Sum_probs=111.6
Q ss_pred CcchHHHHHHHHHhCCChhHHHHHHhhCCCC----CcchHHHHHHHHHcCCChHHHHHHHccCC----CCChhhHHHHHH
Q 007573 80 DVITWNAIITGYWQNGFLQESKNLFQSMPVK----NIVSWNCMIAGCIDNDRIDDAFDYFQAMP----ERNTATYNAMIS 151 (597)
Q Consensus 80 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~----~~~~~~~ll~~~~~~~~~~~A~~~~~~~~----~~~~~~~~~l~~ 151 (597)
...++..||.++++--..++|..+|++.... +..+||.+|.+-.-..+ .+++.+|. .||..++|++++
T Consensus 206 T~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~~~----K~Lv~EMisqkm~Pnl~TfNalL~ 281 (625)
T KOG4422|consen 206 TDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYSVG----KKLVAEMISQKMTPNLFTFNALLS 281 (625)
T ss_pred CchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhhcc----HHHHHHHHHhhcCCchHhHHHHHH
Confidence 4446666666666666666666666665432 55566666655332222 33344433 566666666666
Q ss_pred HHHcCCChHHHHH----HHccCC----CCCchhHHHHHHHHHhCCChhH-HHHHHHhc-----------cc-CCcchHHH
Q 007573 152 GFLKHGRLEEATR----LFEQMP----RRNVISYTAMLDGFMKKGEVDK-ARALSDYM-----------SF-KNVVSWTV 210 (597)
Q Consensus 152 ~~~~~g~~~~A~~----~~~~~~----~~~~~~~~~li~~~~~~g~~~~-A~~~~~~m-----------~~-~~~~~~~~ 210 (597)
...+.|+++.|+. ++.+|+ +|...+|..+|..+++.++..+ |..++.++ .. .|...+..
T Consensus 282 c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~fkp~~p~d~~FF~~ 361 (625)
T KOG4422|consen 282 CAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKTFKPITPTDNKFFQS 361 (625)
T ss_pred HHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCcccCCCCchhHHHHH
Confidence 6666665554433 333333 3556666666666666555533 22222222 11 12334445
Q ss_pred HHHHHHcCCChHHHHHHHhhcCC------CCCCchHHHHHHHHHHhcCCHHHHHHHHhhcCCCChhHHHHHHHHHHHcCC
Q 007573 211 MITGYVKNERFCEARELFYRMPD------YDKNVFVVTAMITGFCKVGMLENARLLFERIQPKDCVSFNAMIAGYAQNGV 284 (597)
Q Consensus 211 ll~~~~~~g~~~~a~~~~~~~~~------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~ 284 (597)
.+..|.+..+.+.|.++...... +.|+.. ...-|..+....++...
T Consensus 362 AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~----------------------------~~fYyr~~~~licq~es 413 (625)
T KOG4422|consen 362 AMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQH----------------------------RNFYYRKFFDLICQMES 413 (625)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHH----------------------------HHHHHHHHHHHHHHHHH
Confidence 55555555555555555544332 111110 01123334444444455
Q ss_pred hhHHHHHHHHhHHCCCCCCHHHHHHHHHHHhccchhHHHHHHHHHHHHhC
Q 007573 285 AEEALRLFSGMIKMDMQPDDATLVSVFTACSALQLLNEGRQSHVLVIRNG 334 (597)
Q Consensus 285 ~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 334 (597)
.+.-+..|+.|.-.-.-|+..+...++++....+.++-..+++.+++..|
T Consensus 414 ~~~~~~~Y~~lVP~~y~p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~~g 463 (625)
T KOG4422|consen 414 IDVTLKWYEDLVPSAYFPHSQTMIHLLRALDVANRLEVIPRIWKDSKEYG 463 (625)
T ss_pred HHHHHHHHHHhccceecCCchhHHHHHHHHhhcCcchhHHHHHHHHHHhh
Confidence 55555555555554455555555555555555555555555555555544
No 46
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.52 E-value=4.6e-14 Score=133.87 Aligned_cols=251 Identities=14% Similarity=0.096 Sum_probs=100.4
Q ss_pred HHHHHHHhcCCHHHHHHHHhhc-C----CCChhHHHHHHHHHHHcCChhHHHHHHHHhHHCCCCCCHHHHHHHHHHHhcc
Q 007573 243 AMITGFCKVGMLENARLLFERI-Q----PKDCVSFNAMIAGYAQNGVAEEALRLFSGMIKMDMQPDDATLVSVFTACSAL 317 (597)
Q Consensus 243 ~l~~~~~~~g~~~~A~~~~~~~-~----~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~ 317 (597)
.+...+.+.|++++|++++++. . +.|+..|..+.......++++.|+..++++...+.. +...+..++.. ...
T Consensus 13 ~~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~-~~~~~~~l~~l-~~~ 90 (280)
T PF13429_consen 13 RLARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKA-NPQDYERLIQL-LQD 90 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccc-ccc
Confidence 3455555666666666666332 1 224444555555555566666666666666554322 22333333333 455
Q ss_pred chhHHHHHHHHHHHHhCCCCcccHHHHHHHHHHhcCCHHHHHHHHhccC-----CCChhhHHHHHHHHHHcCCHHHHHHH
Q 007573 318 QLLNEGRQSHVLVIRNGFEANVSVCNAVITMYSRCGGILDSELAFRQIH-----SPNLVSWNTIIAAFAQHGHYEKALIF 392 (597)
Q Consensus 318 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-----~~~~~~~~~li~~~~~~g~~~~A~~~ 392 (597)
++.++|..+.....+.. +++..+..++..+.+.++++++..+++.+. +.+...|..+...+.+.|+.++|++.
T Consensus 91 ~~~~~A~~~~~~~~~~~--~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~ 168 (280)
T PF13429_consen 91 GDPEEALKLAEKAYERD--GDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRD 168 (280)
T ss_dssp -----------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHH
T ss_pred ccccccccccccccccc--cccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 66666666555444332 344555666677777777777777776643 35667788888888889999999999
Q ss_pred HHHHHHCCCCCC-hHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHhhCC--C
Q 007573 393 FSQMGLNGFDPD-GITFLSLLSACGHAGKVNESMDLFELMVKVYGIIPSSEHYTCLVDILSRAGQLEKAWQITQGMP--F 469 (597)
Q Consensus 393 ~~~m~~~g~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~ 469 (597)
+++..+. .|+ ......++..+...|+.+++.++++...+. .+.++..+..+..+|...|+.++|...+++.. .
T Consensus 169 ~~~al~~--~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~--~~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~ 244 (280)
T PF13429_consen 169 YRKALEL--DPDDPDARNALAWLLIDMGDYDEAREALKRLLKA--APDDPDLWDALAAAYLQLGRYEEALEYLEKALKLN 244 (280)
T ss_dssp HHHHHHH---TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH---HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHS
T ss_pred HHHHHHc--CCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHH--CcCHHHHHHHHHHHhcccccccccccccccccccc
Confidence 9988875 454 667778888888899999888888888764 24566777888889999999999999988865 3
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 007573 470 EADTGVWGSLLAACVINLNVELGELAAKKMRE 501 (597)
Q Consensus 470 ~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 501 (597)
+.|+.....+..++...|+.++|.++.+++.+
T Consensus 245 p~d~~~~~~~a~~l~~~g~~~~A~~~~~~~~~ 276 (280)
T PF13429_consen 245 PDDPLWLLAYADALEQAGRKDEALRLRRQALR 276 (280)
T ss_dssp TT-HHHHHHHHHHHT-----------------
T ss_pred cccccccccccccccccccccccccccccccc
Confidence 34677788888889999999999998888765
No 47
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.52 E-value=2.3e-10 Score=105.73 Aligned_cols=326 Identities=14% Similarity=0.161 Sum_probs=171.6
Q ss_pred CCchhHHHHHHHHHhCCChhHHHHHHHhcc----cCCcchHHHHHHHHHcCCChHHHHHHHhhcCC--CCCCchHHHHHH
Q 007573 172 RNVISYTAMLDGFMKKGEVDKARALSDYMS----FKNVVSWTVMITGYVKNERFCEARELFYRMPD--YDKNVFVVTAMI 245 (597)
Q Consensus 172 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~----~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~--~~~~~~~~~~l~ 245 (597)
+...++..||.++++--..+.|.+++++.. +.+..++|.+|.+-.- ....+++.+|.. +.||..++|+++
T Consensus 205 KT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~----~~~K~Lv~EMisqkm~Pnl~TfNalL 280 (625)
T KOG4422|consen 205 KTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSY----SVGKKLVAEMISQKMTPNLFTFNALL 280 (625)
T ss_pred CCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHh----hccHHHHHHHHHhhcCCchHhHHHHH
Confidence 334445555555555555555555554441 2234444444443321 112344444432 445555555555
Q ss_pred HHHHhcCCHHHHHHHHh----hcC----CCChhHHHHHHHHHHHcCChhH-HHHHHHHhHH----CCCCC----CHHHHH
Q 007573 246 TGFCKVGMLENARLLFE----RIQ----PKDCVSFNAMIAGYAQNGVAEE-ALRLFSGMIK----MDMQP----DDATLV 308 (597)
Q Consensus 246 ~~~~~~g~~~~A~~~~~----~~~----~~~~~~~~~li~~~~~~g~~~~-A~~~~~~m~~----~g~~p----~~~~~~ 308 (597)
.+..+.|+++.|.+.+- +|. +|...+|..+|..+.+-+++.+ |..++.++.. +.++| |...|.
T Consensus 281 ~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~fkp~~p~d~~FF~ 360 (625)
T KOG4422|consen 281 SCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKTFKPITPTDNKFFQ 360 (625)
T ss_pred HHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCcccCCCCchhHHHH
Confidence 55555555544433332 222 2455556666666655555433 3333333332 12222 344566
Q ss_pred HHHHHHhccchhHHHHHHHHHHHHhC----CCCc---ccHHHHHHHHHHhcCCHHHHHHHHhccCC----CChhhHHHHH
Q 007573 309 SVFTACSALQLLNEGRQSHVLVIRNG----FEAN---VSVCNAVITMYSRCGGILDSELAFRQIHS----PNLVSWNTII 377 (597)
Q Consensus 309 ~ll~~~~~~~~~~~a~~~~~~~~~~~----~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~~~~~~~li 377 (597)
..+..|.+..+.+.|.+++....... +.++ ..-|..+..+.+.....+.-...++.|.+ |+..+-..++
T Consensus 361 ~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~lVP~~y~p~~~~m~~~l 440 (625)
T KOG4422|consen 361 SAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYEDLVPSAYFPHSQTMIHLL 440 (625)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccceecCCchhHHHHH
Confidence 67777777777777777766554221 1222 22355566666777777777777777663 5555555566
Q ss_pred HHHHHcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHhccC--------------------cHHHHHH-HHHHhHHhcC
Q 007573 378 AAFAQHGHYEKALIFFSQMGLNGFDPDGITFLSLLSACGHAG--------------------KVNESMD-LFELMVKVYG 436 (597)
Q Consensus 378 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g--------------------~~~~a~~-~~~~~~~~~~ 436 (597)
.+..-.|.++-.-+++..++..|..-+...-..++..+++.. ++.++.+ .-.+++ .
T Consensus 441 rA~~v~~~~e~ipRiw~D~~~~ght~r~~l~eeil~~L~~~k~hp~tp~r~Ql~~~~ak~aad~~e~~e~~~~R~r---~ 517 (625)
T KOG4422|consen 441 RALDVANRLEVIPRIWKDSKEYGHTFRSDLREEILMLLARDKLHPLTPEREQLQVAFAKCAADIKEAYESQPIRQR---A 517 (625)
T ss_pred HHHhhcCcchhHHHHHHHHHHhhhhhhHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHHHHHHHHHHhhHHHHH---h
Confidence 666666666666666666666554333333333333332222 1111111 111122 2
Q ss_pred CCCChHHHHHHHHHHhhcCCHHHHHHHHhhCC-------CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC
Q 007573 437 IIPSSEHYTCLVDILSRAGQLEKAWQITQGMP-------FEADTGVWGSLLAACVINLNVELGELAAKKMRELDP 504 (597)
Q Consensus 437 ~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-------~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p 504 (597)
.+......+.++-.+.|.|+.++|.+++.-+. ..|......-|+..-...++...|..+++-+...+-
T Consensus 518 ~~~~~t~l~~ia~Ll~R~G~~qkA~e~l~l~~~~~~~ip~~p~lnAm~El~d~a~~~~spsqA~~~lQ~a~~~n~ 592 (625)
T KOG4422|consen 518 QDWPATSLNCIAILLLRAGRTQKAWEMLGLFLRKHNKIPRSPLLNAMAELMDSAKVSNSPSQAIEVLQLASAFNL 592 (625)
T ss_pred ccCChhHHHHHHHHHHHcchHHHHHHHHHHHHhcCCcCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCc
Confidence 33445566777778889999999988876542 334444455666677777788888888887765543
No 48
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.51 E-value=3.7e-10 Score=108.32 Aligned_cols=472 Identities=11% Similarity=-0.021 Sum_probs=292.1
Q ss_pred hHHHHHHHHHhcCChHHHHHHHhhcCC--CCcchHHHHHHHHHhCCChhHHHHHHhh--CCCCCcchHHHHHHHHHcCCC
Q 007573 52 VNNAKISALSRAGKISAARQLFDQMTT--KDVITWNAIITGYWQNGFLQESKNLFQS--MPVKNIVSWNCMIAGCIDNDR 127 (597)
Q Consensus 52 ~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~--~~~~~~~~~~~ll~~~~~~~~ 127 (597)
-+..+++-+.-..++..|.-+=++.-. .|+..--.+..++.-.|++++|..+... +.+.|..+.......+.+..+
T Consensus 18 ~~~~~~r~~l~q~~y~~a~f~adkV~~l~~dp~d~~~~aq~l~~~~~y~ra~~lit~~~le~~d~~cryL~~~~l~~lk~ 97 (611)
T KOG1173|consen 18 KYRRLVRDALMQHRYKTALFWADKVAGLTNDPADIYWLAQVLYLGRQYERAAHLITTYKLEKRDIACRYLAAKCLVKLKE 97 (611)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHhccCChHHHHHHHHHHHhhhHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHH
Confidence 445555555555666666665555432 4444455566777777777777766554 334577777777777777777
Q ss_pred hHHHHHHHccCC-CCChhhHHHHHHHHHcCCChHHHHHHHccCCCCC--chhHHHHHHHHHhCCChhHHHHHHHhcccCC
Q 007573 128 IDDAFDYFQAMP-ERNTATYNAMISGFLKHGRLEEATRLFEQMPRRN--VISYTAMLDGFMKKGEVDKARALSDYMSFKN 204 (597)
Q Consensus 128 ~~~A~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 204 (597)
+++|..++.... ..++.+|-.-=. ...-..+.+. ++...+ ...+-.-...|....+.++|...|.+....|
T Consensus 98 ~~~al~vl~~~~~~~~~f~yy~~~~--~~~l~~n~~~----~~~~~~~essic~lRgk~y~al~n~~~ar~~Y~~Al~~D 171 (611)
T KOG1173|consen 98 WDQALLVLGRGHVETNPFSYYEKDA--ANTLELNSAG----EDLMINLESSICYLRGKVYVALDNREEARDKYKEALLAD 171 (611)
T ss_pred HHHHHHHhcccchhhcchhhcchhh--hceeccCccc----ccccccchhceeeeeeehhhhhccHHHHHHHHHHHHhcc
Confidence 777777776432 011111100000 0000001111 111011 1111112234555667777777777776666
Q ss_pred cchHHHHHHHHHcC-CChHHHHHHHhhcCC---CCCCchHHHHHHHHHHhcCCHHHHHHHH--hhc--CCCChhHHHHHH
Q 007573 205 VVSWTVMITGYVKN-ERFCEARELFYRMPD---YDKNVFVVTAMITGFCKVGMLENARLLF--ERI--QPKDCVSFNAMI 276 (597)
Q Consensus 205 ~~~~~~ll~~~~~~-g~~~~a~~~~~~~~~---~~~~~~~~~~l~~~~~~~g~~~~A~~~~--~~~--~~~~~~~~~~li 276 (597)
+..+..+...-... -...+-..++....- ...+......+.....-...-++....- ..+ .+.++.....-.
T Consensus 172 ~~c~Ea~~~lvs~~mlt~~Ee~~ll~~l~~a~~~~ed~e~l~~lyel~~~k~~n~~~~~r~~~~sl~~l~~~~dll~~~a 251 (611)
T KOG1173|consen 172 AKCFEAFEKLVSAHMLTAQEEFELLESLDLAMLTKEDVERLEILYELKLCKNRNEESLTRNEDESLIGLAENLDLLAEKA 251 (611)
T ss_pred hhhHHHHHHHHHHHhcchhHHHHHHhcccHHhhhhhHHHHHHHHHHhhhhhhccccccccCchhhhhhhhhcHHHHHHHH
Confidence 65554433322111 011111222221100 0011111111111110000000000000 000 012444555556
Q ss_pred HHHHHcCChhHHHHHHHHhHHCCCCCCHHHHHHHHHHHhccchhHHHHHHHHHHHHhCCCCcccHHHHHHHHHHhcCCHH
Q 007573 277 AGYAQNGVAEEALRLFSGMIKMDMQPDDATLVSVFTACSALQLLNEGRQSHVLVIRNGFEANVSVCNAVITMYSRCGGIL 356 (597)
Q Consensus 277 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 356 (597)
.-+...+++.+..++.+...+.. ++....+..-|.++...|+..+...+-..+.+.- |....+|-++.-.|.-.|+..
T Consensus 252 d~~y~~c~f~~c~kit~~lle~d-pfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~y-P~~a~sW~aVg~YYl~i~k~s 329 (611)
T KOG1173|consen 252 DRLYYGCRFKECLKITEELLEKD-PFHLPCLPLHIACLYELGKSNKLFLLSHKLVDLY-PSKALSWFAVGCYYLMIGKYS 329 (611)
T ss_pred HHHHHcChHHHHHHHhHHHHhhC-CCCcchHHHHHHHHHHhcccchHHHHHHHHHHhC-CCCCcchhhHHHHHHHhcCcH
Confidence 66778899999999998887753 4455555555666677777666666655555543 667888999999999999999
Q ss_pred HHHHHHhccCCC---ChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHhccCcHHHHHHHHHHhHH
Q 007573 357 DSELAFRQIHSP---NLVSWNTIIAAFAQHGHYEKALIFFSQMGLNGFDPDGITFLSLLSACGHAGKVNESMDLFELMVK 433 (597)
Q Consensus 357 ~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 433 (597)
+|++.|.+...- =...|-....+|+..|..++|+..+...-+.= +-...-+..+..-|.+.+..+.|.++|.+..
T Consensus 330 eARry~SKat~lD~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~-~G~hlP~LYlgmey~~t~n~kLAe~Ff~~A~- 407 (611)
T KOG1173|consen 330 EARRYFSKATTLDPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLM-PGCHLPSLYLGMEYMRTNNLKLAEKFFKQAL- 407 (611)
T ss_pred HHHHHHHHHhhcCccccHHHHHHhHHhhhcchHHHHHHHHHHHHHhc-cCCcchHHHHHHHHHHhccHHHHHHHHHHHH-
Confidence 999999987633 34689999999999999999999988776531 1111223334556788899999999999876
Q ss_pred hcCCCCC-hHHHHHHHHHHhhcCCHHHHHHHHhhCC--------CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 007573 434 VYGIIPS-SEHYTCLVDILSRAGQLEKAWQITQGMP--------FEA-DTGVWGSLLAACVINLNVELGELAAKKMRELD 503 (597)
Q Consensus 434 ~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~--------~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 503 (597)
++.|+ +..++-+.-+....+.+.+|..+|+... ..+ -..+++.|+.+|++.+.+++|+..+++++.+.
T Consensus 408 --ai~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l~ 485 (611)
T KOG1173|consen 408 --AIAPSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQKALLLS 485 (611)
T ss_pred --hcCCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHHHHHHHHcC
Confidence 66664 7788888888888999999999997653 111 24578999999999999999999999999999
Q ss_pred CCCCchHHHHHHHHHhcCCcHHHHHHHHHHHh
Q 007573 504 PQNSAVYVMLSNLYAAAGMWRDVTRVRLLMKE 535 (597)
Q Consensus 504 p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 535 (597)
|++..++..++-+|...|+++.|++.|.+...
T Consensus 486 ~k~~~~~asig~iy~llgnld~Aid~fhKaL~ 517 (611)
T KOG1173|consen 486 PKDASTHASIGYIYHLLGNLDKAIDHFHKALA 517 (611)
T ss_pred CCchhHHHHHHHHHHHhcChHHHHHHHHHHHh
Confidence 99999999999999999999999999988654
No 49
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.50 E-value=4e-11 Score=119.81 Aligned_cols=287 Identities=9% Similarity=-0.041 Sum_probs=178.6
Q ss_pred HcCCChHHHHHHHhhcCCCCCCchHH-HHHHHHHHhcCCHHHHHHHHhhcCC--CCh--hHHHHHHHHHHHcCChhHHHH
Q 007573 216 VKNERFCEARELFYRMPDYDKNVFVV-TAMITGFCKVGMLENARLLFERIQP--KDC--VSFNAMIAGYAQNGVAEEALR 290 (597)
Q Consensus 216 ~~~g~~~~a~~~~~~~~~~~~~~~~~-~~l~~~~~~~g~~~~A~~~~~~~~~--~~~--~~~~~li~~~~~~g~~~~A~~ 290 (597)
...|+++.|++.+....+..|+...+ -....++.+.|+.+.|.+.+.+..+ ++. ...-.....+...|+++.|..
T Consensus 95 ~~~g~~~~A~~~l~~~~~~~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~~Al~ 174 (409)
T TIGR00540 95 LAEGDYAKAEKLIAKNADHAAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQNELHAARH 174 (409)
T ss_pred HhCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHHHHHH
Confidence 35677777777777666655554333 3335556666777777777766432 222 222334566666777777777
Q ss_pred HHHHhHHCCCCCCHHHHHHHHHHHhccchhHHHHHHHHHHHHhCCCCcccHHHHHHHHHHhcCCHHHHHHHHhccCCCCh
Q 007573 291 LFSGMIKMDMQPDDATLVSVFTACSALQLLNEGRQSHVLVIRNGFEANVSVCNAVITMYSRCGGILDSELAFRQIHSPNL 370 (597)
Q Consensus 291 ~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 370 (597)
.++.+.+.. +-+......+...+...|+++.+...+..+.+.+..+.......-.
T Consensus 175 ~l~~l~~~~-P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~------------------------ 229 (409)
T TIGR00540 175 GVDKLLEMA-PRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQ------------------------ 229 (409)
T ss_pred HHHHHHHhC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHH------------------------
Confidence 777776653 1133344455555566666666666666555554221111100000
Q ss_pred hhHHHHHHHHHHcCCHHHHHHHHHHHHHCCC---CCChHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChHH---H
Q 007573 371 VSWNTIIAAFAQHGHYEKALIFFSQMGLNGF---DPDGITFLSLLSACGHAGKVNESMDLFELMVKVYGIIPSSEH---Y 444 (597)
Q Consensus 371 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~---~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~---~ 444 (597)
....+....+..+++.+.+..+.+... +.+...+..+...+...|+.++|.+++++..+. .|+... .
T Consensus 230 ----~a~~~~l~~~~~~~~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~---~pd~~~~~~~ 302 (409)
T TIGR00540 230 ----KAEIGLLDEAMADEGIDGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKK---LGDDRAISLP 302 (409)
T ss_pred ----HHHHHHHHHHHHhcCHHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhh---CCCcccchhH
Confidence 111111222333334445555554321 137788888889999999999999999999874 334321 1
Q ss_pred HHHHHHHhhcCCHHHHHHHHhhCC-CCCC-H--HHHHHHHHHHHhcCCHHHHHHHHH--HHHhcCCCCCchHHHHHHHHH
Q 007573 445 TCLVDILSRAGQLEKAWQITQGMP-FEAD-T--GVWGSLLAACVINLNVELGELAAK--KMRELDPQNSAVYVMLSNLYA 518 (597)
Q Consensus 445 ~~l~~~~~~~g~~~~A~~~~~~~~-~~p~-~--~~~~~l~~~~~~~g~~~~a~~~~~--~~~~~~p~~~~~~~~l~~~~~ 518 (597)
..........++.+.+.+.+++.. ..|+ + ....+++..|.+.|++++|.+.|+ .+.+..|++.. +..++.++.
T Consensus 303 ~l~~~~~l~~~~~~~~~~~~e~~lk~~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~-~~~La~ll~ 381 (409)
T TIGR00540 303 LCLPIPRLKPEDNEKLEKLIEKQAKNVDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDAND-LAMAADAFD 381 (409)
T ss_pred HHHHhhhcCCCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHH-HHHHHHHHH
Confidence 111222234578888888887754 4454 4 567799999999999999999999 57778887655 679999999
Q ss_pred hcCCcHHHHHHHHHHHh
Q 007573 519 AAGMWRDVTRVRLLMKE 535 (597)
Q Consensus 519 ~~g~~~~A~~~~~~~~~ 535 (597)
+.|+.++|.++|++...
T Consensus 382 ~~g~~~~A~~~~~~~l~ 398 (409)
T TIGR00540 382 QAGDKAEAAAMRQDSLG 398 (409)
T ss_pred HcCCHHHHHHHHHHHHH
Confidence 99999999999998654
No 50
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.46 E-value=4.2e-10 Score=103.65 Aligned_cols=290 Identities=12% Similarity=0.084 Sum_probs=200.8
Q ss_pred HHHHHHHHh--CCChhHHHHHHHhcccC---CcchHHHHHHHHHcCCChHHHHHHHhhcCCC--CCCchHHHHHHHHHHh
Q 007573 178 TAMLDGFMK--KGEVDKARALSDYMSFK---NVVSWTVMITGYVKNERFCEARELFYRMPDY--DKNVFVVTAMITGFCK 250 (597)
Q Consensus 178 ~~li~~~~~--~g~~~~A~~~~~~m~~~---~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~--~~~~~~~~~l~~~~~~ 250 (597)
..+.++..+ .|++.+|+.+..+-.+. ....|..-+++.-..|+.+.+-.++.++.+. +++..+.-+.......
T Consensus 86 ~~~~egl~~l~eG~~~qAEkl~~rnae~~e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~ 165 (400)
T COG3071 86 KALNEGLLKLFEGDFQQAEKLLRRNAEHGEQPVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLN 165 (400)
T ss_pred HHHHHHHHHHhcCcHHHHHHHHHHhhhcCcchHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHh
Confidence 344444444 68899998888776433 2344555567777889999999999999886 4455667778888889
Q ss_pred cCCHHHHHHHHhhc---CCCChhHHHHHHHHHHHcCChhHHHHHHHHhHHCCCCCCHHHHHHHHHHHhccchhHHHHHHH
Q 007573 251 VGMLENARLLFERI---QPKDCVSFNAMIAGYAQNGVAEEALRLFSGMIKMDMQPDDATLVSVFTACSALQLLNEGRQSH 327 (597)
Q Consensus 251 ~g~~~~A~~~~~~~---~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~ 327 (597)
.|+++.|..-.+++ .+.++........+|.+.|++.....++..|.+.|.--|...-.
T Consensus 166 ~~d~~aA~~~v~~ll~~~pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~------------------- 226 (400)
T COG3071 166 RRDYPAARENVDQLLEMTPRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAAR------------------- 226 (400)
T ss_pred CCCchhHHHHHHHHHHhCcCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHH-------------------
Confidence 99999988877664 45678889999999999999999999999999988655433210
Q ss_pred HHHHHhCCCCcccHHHHHHHHHHhcCCHHHHHHHHhccC---CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC
Q 007573 328 VLVIRNGFEANVSVCNAVITMYSRCGGILDSELAFRQIH---SPNLVSWNTIIAAFAQHGHYEKALIFFSQMGLNGFDPD 404 (597)
Q Consensus 328 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~ 404 (597)
....+++.+++-....+..+.-...++..+ +.++..-.+++.-+.+.|+.++|.++..+..+.+..|+
T Consensus 227 ---------le~~a~~glL~q~~~~~~~~gL~~~W~~~pr~lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~ 297 (400)
T COG3071 227 ---------LEQQAWEGLLQQARDDNGSEGLKTWWKNQPRKLRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPR 297 (400)
T ss_pred ---------HHHHHHHHHHHHHhccccchHHHHHHHhccHHhhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChh
Confidence 011233333333333333444444555555 34566666777778888888888888888887776666
Q ss_pred hHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHhhCC-CCCCHHHHHHHHHHH
Q 007573 405 GITFLSLLSACGHAGKVNESMDLFELMVKVYGIIPSSEHYTCLVDILSRAGQLEKAWQITQGMP-FEADTGVWGSLLAAC 483 (597)
Q Consensus 405 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p~~~~~~~l~~~~ 483 (597)
....-.+.+.++...-.+..+...+.++..| ..+.+|...|.+.+.+.+|...|+... ..|+..+|.-+..++
T Consensus 298 ----L~~~~~~l~~~d~~~l~k~~e~~l~~h~~~p--~L~~tLG~L~~k~~~w~kA~~~leaAl~~~~s~~~~~~la~~~ 371 (400)
T COG3071 298 ----LCRLIPRLRPGDPEPLIKAAEKWLKQHPEDP--LLLSTLGRLALKNKLWGKASEALEAALKLRPSASDYAELADAL 371 (400)
T ss_pred ----HHHHHhhcCCCCchHHHHHHHHHHHhCCCCh--hHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCChhhHHHHHHHH
Confidence 2223345566777666666666666444433 667777777777788888777777544 677777777777777
Q ss_pred HhcCCHHHHHHHHHHHHh
Q 007573 484 VINLNVELGELAAKKMRE 501 (597)
Q Consensus 484 ~~~g~~~~a~~~~~~~~~ 501 (597)
.+.|+.++|.+..++.+.
T Consensus 372 ~~~g~~~~A~~~r~e~L~ 389 (400)
T COG3071 372 DQLGEPEEAEQVRREALL 389 (400)
T ss_pred HHcCChHHHHHHHHHHHH
Confidence 777777777777777764
No 51
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.45 E-value=2.4e-11 Score=112.25 Aligned_cols=197 Identities=12% Similarity=0.045 Sum_probs=164.8
Q ss_pred cccHHHHHHHHHHhcCCHHHHHHHHhccC---CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHH
Q 007573 338 NVSVCNAVITMYSRCGGILDSELAFRQIH---SPNLVSWNTIIAAFAQHGHYEKALIFFSQMGLNGFDPDGITFLSLLSA 414 (597)
Q Consensus 338 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~ 414 (597)
....+..+...+...|++++|...+++.. +.+...+..+...+...|++++|.+.+++..+.. +.+...+..+...
T Consensus 30 ~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~ 108 (234)
T TIGR02521 30 AAKIRVQLALGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLN-PNNGDVLNNYGTF 108 (234)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHH
Confidence 34567778888999999999999998765 4456788888899999999999999999998764 3456677788888
Q ss_pred HhccCcHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHhhCC-CCC-CHHHHHHHHHHHHhcCCHHHH
Q 007573 415 CGHAGKVNESMDLFELMVKVYGIIPSSEHYTCLVDILSRAGQLEKAWQITQGMP-FEA-DTGVWGSLLAACVINLNVELG 492 (597)
Q Consensus 415 ~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~l~~~~~~~g~~~~a 492 (597)
+...|++++|.+.++.+.+..........+..+...+...|++++|.+.+++.. ..| +...+..+...+...|++++|
T Consensus 109 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A 188 (234)
T TIGR02521 109 LCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQRPESLLELAELYYLRGQYKDA 188 (234)
T ss_pred HHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCChHHHHHHHHHHHHcCCHHHH
Confidence 999999999999999988642222345677788899999999999999998865 334 466788888999999999999
Q ss_pred HHHHHHHHhcCCCCCchHHHHHHHHHhcCCcHHHHHHHHHHHh
Q 007573 493 ELAAKKMRELDPQNSAVYVMLSNLYAAAGMWRDVTRVRLLMKE 535 (597)
Q Consensus 493 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 535 (597)
...++++++..|.++..+..++.++...|+.++|..+.+.+..
T Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 231 (234)
T TIGR02521 189 RAYLERYQQTYNQTAESLWLGIRIARALGDVAAAQRYGAQLQK 231 (234)
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 9999999999888888888999999999999999999887765
No 52
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.44 E-value=1.3e-09 Score=100.42 Aligned_cols=270 Identities=10% Similarity=-0.000 Sum_probs=203.5
Q ss_pred CCCCchHHHHHHHHHHhcCCHHHHHHHHhhcCCCChh---HHHHHHHHHHHcCChhHHHHHHHHhHHCCCCCCHHHHHHH
Q 007573 234 YDKNVFVVTAMITGFCKVGMLENARLLFERIQPKDCV---SFNAMIAGYAQNGVAEEALRLFSGMIKMDMQPDDATLVSV 310 (597)
Q Consensus 234 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~---~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l 310 (597)
+.-|+....++...+...|+.++|+..|++...-|+. ........+.+.|+.+....+...+.... +-+...|..-
T Consensus 228 lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~dpy~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~-~~ta~~wfV~ 306 (564)
T KOG1174|consen 228 LRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCANPDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAKV-KYTASHWFVH 306 (564)
T ss_pred CCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCChhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhhh-hcchhhhhhh
Confidence 5567888899999999999999999999987655443 33334455677888888888877776532 1223333333
Q ss_pred HHHHhccchhHHHHHHHHHHHHhCCCCcccHHHHHHHHHHhcCCHHHHHHHHhccC---CCChhhHHHHHHHHHHcCCHH
Q 007573 311 FTACSALQLLNEGRQSHVLVIRNGFEANVSVCNAVITMYSRCGGILDSELAFRQIH---SPNLVSWNTIIAAFAQHGHYE 387 (597)
Q Consensus 311 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~ 387 (597)
........+.+.|..+-++.++.+ +.+...+-.-...+...|+.++|.-.|+... +-+...|..++.+|...|++.
T Consensus 307 ~~~l~~~K~~~rAL~~~eK~I~~~-~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~Lap~rL~~Y~GL~hsYLA~~~~k 385 (564)
T KOG1174|consen 307 AQLLYDEKKFERALNFVEKCIDSE-PRNHEALILKGRLLIALERHTQAVIAFRTAQMLAPYRLEIYRGLFHSYLAQKRFK 385 (564)
T ss_pred hhhhhhhhhHHHHHHHHHHHhccC-cccchHHHhccHHHHhccchHHHHHHHHHHHhcchhhHHHHHHHHHHHHhhchHH
Confidence 334446677888888777777665 3445555555677888899999999998765 567889999999999999999
Q ss_pred HHHHHHHHHHHCCCCCChHHHHHHH-HHHh-ccCcHHHHHHHHHHhHHhcCCCCC-hHHHHHHHHHHhhcCCHHHHHHHH
Q 007573 388 KALIFFSQMGLNGFDPDGITFLSLL-SACG-HAGKVNESMDLFELMVKVYGIIPS-SEHYTCLVDILSRAGQLEKAWQIT 464 (597)
Q Consensus 388 ~A~~~~~~m~~~g~~p~~~~~~~ll-~~~~-~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~ 464 (597)
+|..+-+..... ++.+..+.+.+. ..|. ....-++|.++++... .+.|+ ...-+.+...+.+.|+.+++..++
T Consensus 386 EA~~~An~~~~~-~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L---~~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LL 461 (564)
T KOG1174|consen 386 EANALANWTIRL-FQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSL---KINPIYTPAVNLIAELCQVEGPTKDIIKLL 461 (564)
T ss_pred HHHHHHHHHHHH-hhcchhhhhhhcceeeccCchhHHHHHHHHHhhh---ccCCccHHHHHHHHHHHHhhCccchHHHHH
Confidence 999887776643 345566666553 3332 3344578888888765 55676 556778889999999999999999
Q ss_pred hhCC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCch
Q 007573 465 QGMP-FEADTGVWGSLLAACVINLNVELGELAAKKMRELDPQNSAV 509 (597)
Q Consensus 465 ~~~~-~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~ 509 (597)
++.. ..||...-+.|.......+.+.+|...|..+++++|++..+
T Consensus 462 e~~L~~~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~dP~~~~s 507 (564)
T KOG1174|consen 462 EKHLIIFPDVNLHNHLGDIMRAQNEPQKAMEYYYKALRQDPKSKRT 507 (564)
T ss_pred HHHHhhccccHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCccchHH
Confidence 8865 78899999999999999999999999999999999997653
No 53
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.44 E-value=9.1e-10 Score=103.68 Aligned_cols=220 Identities=10% Similarity=0.035 Sum_probs=173.4
Q ss_pred HHHHcCChhHHHHHHHHhHHCCCCCCHHHHHHHHHHHhccchhHHHHHHHHHHHHhCCCCcccHHHHHHHHHHhcCCHHH
Q 007573 278 GYAQNGVAEEALRLFSGMIKMDMQPDDATLVSVFTACSALQLLNEGRQSHVLVIRNGFEANVSVCNAVITMYSRCGGILD 357 (597)
Q Consensus 278 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 357 (597)
.+.-.|+.-.|..-|+..+.....++.. |.-+..++....+.++..+.|..+.+.+ +.++.+|..-..++.-.+++++
T Consensus 335 F~fL~g~~~~a~~d~~~~I~l~~~~~~l-yI~~a~~y~d~~~~~~~~~~F~~A~~ld-p~n~dvYyHRgQm~flL~q~e~ 412 (606)
T KOG0547|consen 335 FHFLKGDSLGAQEDFDAAIKLDPAFNSL-YIKRAAAYADENQSEKMWKDFNKAEDLD-PENPDVYYHRGQMRFLLQQYEE 412 (606)
T ss_pred hhhhcCCchhhhhhHHHHHhcCcccchH-HHHHHHHHhhhhccHHHHHHHHHHHhcC-CCCCchhHhHHHHHHHHHHHHH
Confidence 3455788889999999888765444432 6667778889999999999999998887 6678888888888999999999
Q ss_pred HHHHHhccCC---CChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHhccCcHHHHHHHHHHhHHh
Q 007573 358 SELAFRQIHS---PNLVSWNTIIAAFAQHGHYEKALIFFSQMGLNGFDPDGITFLSLLSACGHAGKVNESMDLFELMVKV 434 (597)
Q Consensus 358 A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 434 (597)
|..-|++... .+...|-.+.-+..+.+++++++..|++.++. ++.-+..|+.....+...++++.|.+.|+..+.-
T Consensus 413 A~aDF~Kai~L~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkk-FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~L 491 (606)
T KOG0547|consen 413 AIADFQKAISLDPENAYAYIQLCCALYRQHKIAESMKTFEEAKKK-FPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIEL 491 (606)
T ss_pred HHHHHHHHhhcChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhh
Confidence 9999998873 44556666666777889999999999999875 4445788999999999999999999999988753
Q ss_pred cCCCCC---------hHHHHHHHHHHhhcCCHHHHHHHHhhCC-CCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 007573 435 YGIIPS---------SEHYTCLVDILSRAGQLEKAWQITQGMP-FEAD-TGVWGSLLAACVINLNVELGELAAKKMRELD 503 (597)
Q Consensus 435 ~~~~p~---------~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 503 (597)
.|+ +.+--.++-.- -.+++..|..++++.. ..|. ...+..|...-.+.|+.++|+++|++...+-
T Consensus 492 ---E~~~~~~~v~~~plV~Ka~l~~q-wk~d~~~a~~Ll~KA~e~Dpkce~A~~tlaq~~lQ~~~i~eAielFEksa~lA 567 (606)
T KOG0547|consen 492 ---EPREHLIIVNAAPLVHKALLVLQ-WKEDINQAENLLRKAIELDPKCEQAYETLAQFELQRGKIDEAIELFEKSAQLA 567 (606)
T ss_pred ---ccccccccccchhhhhhhHhhhc-hhhhHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 333 22222333222 3489999999998876 6665 4589999999999999999999999988664
Q ss_pred C
Q 007573 504 P 504 (597)
Q Consensus 504 p 504 (597)
.
T Consensus 568 r 568 (606)
T KOG0547|consen 568 R 568 (606)
T ss_pred H
Confidence 3
No 54
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.42 E-value=2.9e-10 Score=101.46 Aligned_cols=112 Identities=13% Similarity=0.186 Sum_probs=62.3
Q ss_pred CCChhHHHHHHHhcccCCcchH---HHHHHHHHcCCChHHHHHHHhhcCCCCCCc------hHHHHHHHHHHhcCCHHHH
Q 007573 187 KGEVDKARALSDYMSFKNVVSW---TVMITGYVKNERFCEARELFYRMPDYDKNV------FVVTAMITGFCKVGMLENA 257 (597)
Q Consensus 187 ~g~~~~A~~~~~~m~~~~~~~~---~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~------~~~~~l~~~~~~~g~~~~A 257 (597)
..+.++|.++|-+|.+.|..|+ -+|.+.|-+.|..+.|+++++.+.+. ||. .+...|..-|...|-++.|
T Consensus 48 s~Q~dKAvdlF~e~l~~d~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~s-pdlT~~qr~lAl~qL~~Dym~aGl~DRA 126 (389)
T COG2956 48 SNQPDKAVDLFLEMLQEDPETFEAHLTLGNLFRSRGEVDRAIRIHQTLLES-PDLTFEQRLLALQQLGRDYMAAGLLDRA 126 (389)
T ss_pred hcCcchHHHHHHHHHhcCchhhHHHHHHHHHHHhcchHHHHHHHHHHHhcC-CCCchHHHHHHHHHHHHHHHHhhhhhHH
Confidence 3566777777777755554443 34556666666666666666665541 221 1233445555566666666
Q ss_pred HHHHhhcCCCCh---hHHHHHHHHHHHcCChhHHHHHHHHhHHCC
Q 007573 258 RLLFERIQPKDC---VSFNAMIAGYAQNGVAEEALRLFSGMIKMD 299 (597)
Q Consensus 258 ~~~~~~~~~~~~---~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 299 (597)
+.+|..+.+.+. .+.-.|+..|-...+|++|+++-+++.+.+
T Consensus 127 E~~f~~L~de~efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~ 171 (389)
T COG2956 127 EDIFNQLVDEGEFAEGALQQLLNIYQATREWEKAIDVAERLVKLG 171 (389)
T ss_pred HHHHHHHhcchhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcC
Confidence 666666554222 244455555666666666666655555543
No 55
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.41 E-value=1.4e-09 Score=104.41 Aligned_cols=462 Identities=12% Similarity=0.007 Sum_probs=263.1
Q ss_pred CCcchHHHHHHHHHhcCChHHHHHHHhh--cCCCCcchHHHHHHHHHhCCChhHHHHHHhhCCCC-CcchHHHHHHHHHc
Q 007573 48 QYVFVNNAKISALSRAGKISAARQLFDQ--MTTKDVITWNAIITGYWQNGFLQESKNLFQSMPVK-NIVSWNCMIAGCID 124 (597)
Q Consensus 48 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~--~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~ll~~~~~ 124 (597)
.|+.----+.++|.-.|++..|..+... +.+.|..+.......+.+..++++|+.++...... ++..+..-=.+ .
T Consensus 47 ~dp~d~~~~aq~l~~~~~y~ra~~lit~~~le~~d~~cryL~~~~l~~lk~~~~al~vl~~~~~~~~~f~yy~~~~~--~ 124 (611)
T KOG1173|consen 47 NDPADIYWLAQVLYLGRQYERAAHLITTYKLEKRDIACRYLAAKCLVKLKEWDQALLVLGRGHVETNPFSYYEKDAA--N 124 (611)
T ss_pred CChHHHHHHHHHHHhhhHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhcccchhhcchhhcchhhh--c
Confidence 3444444567888888888888877664 34577778888888899999999999999855321 22111110000 0
Q ss_pred CCChHHHHHHHccCCCCChh--hHHHHHHHHHcCCChHHHHHHHccCCCCCchhHHHHHHHHHhCC-ChhHHHHHHHhc-
Q 007573 125 NDRIDDAFDYFQAMPERNTA--TYNAMISGFLKHGRLEEATRLFEQMPRRNVISYTAMLDGFMKKG-EVDKARALSDYM- 200 (597)
Q Consensus 125 ~~~~~~A~~~~~~~~~~~~~--~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g-~~~~A~~~~~~m- 200 (597)
.-..+.+. +..+.+.. .+-.-...|....+.++|+..|.+....|+..+..+...-...= -..+-..++...
T Consensus 125 ~l~~n~~~----~~~~~~~essic~lRgk~y~al~n~~~ar~~Y~~Al~~D~~c~Ea~~~lvs~~mlt~~Ee~~ll~~l~ 200 (611)
T KOG1173|consen 125 TLELNSAG----EDLMINLESSICYLRGKVYVALDNREEARDKYKEALLADAKCFEAFEKLVSAHMLTAQEEFELLESLD 200 (611)
T ss_pred eeccCccc----ccccccchhceeeeeeehhhhhccHHHHHHHHHHHHhcchhhHHHHHHHHHHHhcchhHHHHHHhccc
Confidence 00000011 00011111 11111233444455566666665555444443333222111100 001112222211
Q ss_pred ----ccCCcchHHHHHHHHH-cCCChHHHHHHH--hhcCCCCCCchHHHHHHHHHHhcCCHHHHHHHHhhcCCCCh---h
Q 007573 201 ----SFKNVVSWTVMITGYV-KNERFCEARELF--YRMPDYDKNVFVVTAMITGFCKVGMLENARLLFERIQPKDC---V 270 (597)
Q Consensus 201 ----~~~~~~~~~~ll~~~~-~~g~~~~a~~~~--~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~---~ 270 (597)
...++.....+..... +..+. +....- ..+.+...+..+.....+-+-..+++.+..++++.+.+.|+ .
T Consensus 201 ~a~~~~ed~e~l~~lyel~~~k~~n~-~~~~r~~~~sl~~l~~~~dll~~~ad~~y~~c~f~~c~kit~~lle~dpfh~~ 279 (611)
T KOG1173|consen 201 LAMLTKEDVERLEILYELKLCKNRNE-ESLTRNEDESLIGLAENLDLLAEKADRLYYGCRFKECLKITEELLEKDPFHLP 279 (611)
T ss_pred HHhhhhhHHHHHHHHHHhhhhhhccc-cccccCchhhhhhhhhcHHHHHHHHHHHHHcChHHHHHHHhHHHHhhCCCCcc
Confidence 0111111111111110 00000 000000 11111223444455555666666777777777776655433 3
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHhHHCCCCCCHHHHHHHHHHHhccchhHHHHHHHHHHHHhCCCCcccHHHHHHHHHH
Q 007573 271 SFNAMIAGYAQNGVAEEALRLFSGMIKMDMQPDDATLVSVFTACSALQLLNEGRQSHVLVIRNGFEANVSVCNAVITMYS 350 (597)
Q Consensus 271 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 350 (597)
.+..-|..+...|+..+-..+=.+|.+. .+-...+|-++..-|...|...+|++.+.+....+ +.-...|-.....|+
T Consensus 280 ~~~~~ia~l~el~~~n~Lf~lsh~LV~~-yP~~a~sW~aVg~YYl~i~k~seARry~SKat~lD-~~fgpaWl~fghsfa 357 (611)
T KOG1173|consen 280 CLPLHIACLYELGKSNKLFLLSHKLVDL-YPSKALSWFAVGCYYLMIGKYSEARRYFSKATTLD-PTFGPAWLAFGHSFA 357 (611)
T ss_pred hHHHHHHHHHHhcccchHHHHHHHHHHh-CCCCCcchhhHHHHHHHhcCcHHHHHHHHHHhhcC-ccccHHHHHHhHHhh
Confidence 4455555666667666666555556553 13344566666666666677777777777665443 223445667777777
Q ss_pred hcCCHHHHHHHHhccC---CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHhccCcHHHHHHH
Q 007573 351 RCGGILDSELAFRQIH---SPNLVSWNTIIAAFAQHGHYEKALIFFSQMGLNGFDPDGITFLSLLSACGHAGKVNESMDL 427 (597)
Q Consensus 351 ~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~ 427 (597)
-.|.-+.|...+.... +.....+--+.--|.+.++.+-|.++|.+...- .+-|+...+-+.-.....+.+.+|..+
T Consensus 358 ~e~EhdQAmaaY~tAarl~~G~hlP~LYlgmey~~t~n~kLAe~Ff~~A~ai-~P~Dplv~~Elgvvay~~~~y~~A~~~ 436 (611)
T KOG1173|consen 358 GEGEHDQAMAAYFTAARLMPGCHLPSLYLGMEYMRTNNLKLAEKFFKQALAI-APSDPLVLHELGVVAYTYEEYPEALKY 436 (611)
T ss_pred hcchHHHHHHHHHHHHHhccCCcchHHHHHHHHHHhccHHHHHHHHHHHHhc-CCCcchhhhhhhheeehHhhhHHHHHH
Confidence 7777777777665443 222222333444577788999999999887643 234566677776666678889999999
Q ss_pred HHHhHHhc-CCC---C-ChHHHHHHHHHHhhcCCHHHHHHHHhhCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 007573 428 FELMVKVY-GII---P-SSEHYTCLVDILSRAGQLEKAWQITQGMP--FEADTGVWGSLLAACVINLNVELGELAAKKMR 500 (597)
Q Consensus 428 ~~~~~~~~-~~~---p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 500 (597)
|+.....- .+. + -..+++.|..+|.+.+++++|+..+++.. .+.+..++.+++-.|...|+++.|+..|.+++
T Consensus 437 f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l~~k~~~~~asig~iy~llgnld~Aid~fhKaL 516 (611)
T KOG1173|consen 437 FQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQKALLLSPKDASTHASIGYIYHLLGNLDKAIDHFHKAL 516 (611)
T ss_pred HHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHhcChHHHHHHHHHHH
Confidence 88776321 111 1 23468889999999999999999999865 45578899999999999999999999999999
Q ss_pred hcCCCCCchHHHHHHHHHh
Q 007573 501 ELDPQNSAVYVMLSNLYAA 519 (597)
Q Consensus 501 ~~~p~~~~~~~~l~~~~~~ 519 (597)
-+.|++..+-..|..+...
T Consensus 517 ~l~p~n~~~~~lL~~aie~ 535 (611)
T KOG1173|consen 517 ALKPDNIFISELLKLAIED 535 (611)
T ss_pred hcCCccHHHHHHHHHHHHh
Confidence 9999997666666554433
No 56
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.41 E-value=3.9e-10 Score=100.69 Aligned_cols=280 Identities=11% Similarity=0.095 Sum_probs=186.3
Q ss_pred CCChHHHHHHHhhcCCCCC-CchHHHHHHHHHHhcCCHHHHHHHHhhcCC-CCh------hHHHHHHHHHHHcCChhHHH
Q 007573 218 NERFCEARELFYRMPDYDK-NVFVVTAMITGFCKVGMLENARLLFERIQP-KDC------VSFNAMIAGYAQNGVAEEAL 289 (597)
Q Consensus 218 ~g~~~~a~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~------~~~~~li~~~~~~g~~~~A~ 289 (597)
+.+.++|...|-+|.+.+| +..+.-+|.+.|-+.|.++.|+++-+.+.+ ||. .+.-.|..-|...|-+|.|.
T Consensus 48 s~Q~dKAvdlF~e~l~~d~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~DRAE 127 (389)
T COG2956 48 SNQPDKAVDLFLEMLQEDPETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLLDRAE 127 (389)
T ss_pred hcCcchHHHHHHHHHhcCchhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhhHHH
Confidence 4567777777777777554 334556777778888888888887777654 332 23445666677778888888
Q ss_pred HHHHHhHHCCCCCCHHHHHHHHHHHhccchhHHHHHHHHHHHHhCCCCc----ccHHHHHHHHHHhcCCHHHHHHHHhcc
Q 007573 290 RLFSGMIKMDMQPDDATLVSVFTACSALQLLNEGRQSHVLVIRNGFEAN----VSVCNAVITMYSRCGGILDSELAFRQI 365 (597)
Q Consensus 290 ~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~ 365 (597)
.+|..+.+.| .--......++..|-...+|++|..+-..+.+.+-.+. ...|.-|...+....+.+.|...+.+.
T Consensus 128 ~~f~~L~de~-efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~kA 206 (389)
T COG2956 128 DIFNQLVDEG-EFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELLKKA 206 (389)
T ss_pred HHHHHHhcch-hhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHH
Confidence 8887777644 23344566677777777888888877777776654443 234666777777777788888887776
Q ss_pred CC---CChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChH
Q 007573 366 HS---PNLVSWNTIIAAFAQHGHYEKALIFFSQMGLNGFDPDGITFLSLLSACGHAGKVNESMDLFELMVKVYGIIPSSE 442 (597)
Q Consensus 366 ~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~ 442 (597)
.. ..+..--.+...+...|++.+|++.++...+.+..--..+...+..+|.+.|+.+++...+..+.+. .+...
T Consensus 207 lqa~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~---~~g~~ 283 (389)
T COG2956 207 LQADKKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMET---NTGAD 283 (389)
T ss_pred HhhCccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHc---cCCcc
Confidence 63 2233344455667788888888888888887643333556777888888888888888888887754 33444
Q ss_pred HHHHHHHHHhhcCCHHHHHHH-HhhCCCCCCHHHHHHHHHHHH---hcCCHHHHHHHHHHHHh
Q 007573 443 HYTCLVDILSRAGQLEKAWQI-TQGMPFEADTGVWGSLLAACV---INLNVELGELAAKKMRE 501 (597)
Q Consensus 443 ~~~~l~~~~~~~g~~~~A~~~-~~~~~~~p~~~~~~~l~~~~~---~~g~~~~a~~~~~~~~~ 501 (597)
.-..+.+.-....-.+.|..+ .+++..+|+...+..|+..-. ..|...+....++.|+.
T Consensus 284 ~~l~l~~lie~~~G~~~Aq~~l~~Ql~r~Pt~~gf~rl~~~~l~daeeg~~k~sL~~lr~mvg 346 (389)
T COG2956 284 AELMLADLIELQEGIDAAQAYLTRQLRRKPTMRGFHRLMDYHLADAEEGRAKESLDLLRDMVG 346 (389)
T ss_pred HHHHHHHHHHHhhChHHHHHHHHHHHhhCCcHHHHHHHHHhhhccccccchhhhHHHHHHHHH
Confidence 444455544444445555544 455667888888888887743 23445666666666664
No 57
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.39 E-value=2e-09 Score=103.92 Aligned_cols=450 Identities=10% Similarity=0.102 Sum_probs=239.4
Q ss_pred HHHHHhcCChHHHHHHHhhcCC--CC-cchHHHHHHHHHhCCChhHHHHHHhhCCCCCcchHHHHHHHHH--cCCChHHH
Q 007573 57 ISALSRAGKISAARQLFDQMTT--KD-VITWNAIITGYWQNGFLQESKNLFQSMPVKNIVSWNCMIAGCI--DNDRIDDA 131 (597)
Q Consensus 57 ~~~~~~~g~~~~A~~~~~~~~~--~~-~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ll~~~~--~~~~~~~A 131 (597)
++.+...|++++|.+..+++.. || ...+..-+-++.+.+.+++|+.+.+.-..........+=.+|+ +.+..++|
T Consensus 19 ln~~~~~~e~e~a~k~~~Kil~~~pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~~~~~~~~fEKAYc~Yrlnk~Dea 98 (652)
T KOG2376|consen 19 LNRHGKNGEYEEAVKTANKILSIVPDDEDAIRCKVVALIQLDKYEDALKLIKKNGALLVINSFFFEKAYCEYRLNKLDEA 98 (652)
T ss_pred HHHhccchHHHHHHHHHHHHHhcCCCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchhhhcchhhHHHHHHHHHcccHHHH
Confidence 5666778888888888887765 33 3345555666778888888886666554321111111334444 77778888
Q ss_pred HHHHccCCCCChhhHHHHHHHHHcCCChHHHHHHHccCCCCCchhHHHHHHHHHh-CCChhHHHHHHHhcccCCcchHHH
Q 007573 132 FDYFQAMPERNTATYNAMISGFLKHGRLEEATRLFEQMPRRNVISYTAMLDGFMK-KGEVDKARALSDYMSFKNVVSWTV 210 (597)
Q Consensus 132 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~-~g~~~~A~~~~~~m~~~~~~~~~~ 210 (597)
...++...+.+..+...-...+-+.|++++|..+|+.+.+.+...+...+++-+. .+-.-.+- +.+........+|..
T Consensus 99 lk~~~~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~l~~~-~~q~v~~v~e~syel 177 (652)
T KOG2376|consen 99 LKTLKGLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAALQVQ-LLQSVPEVPEDSYEL 177 (652)
T ss_pred HHHHhcccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhhhHH-HHHhccCCCcchHHH
Confidence 8877755555555555556677777888888888877765544444333322111 11111111 233332222333333
Q ss_pred HH---HHHHcCCChHHHHHHHhhcCCCCCCchHHHHHHHHHHhcCCHHHHHHHHhhcCCCCh-hHHHHHHHHHHHcCChh
Q 007573 211 MI---TGYVKNERFCEARELFYRMPDYDKNVFVVTAMITGFCKVGMLENARLLFERIQPKDC-VSFNAMIAGYAQNGVAE 286 (597)
Q Consensus 211 ll---~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~li~~~~~~g~~~ 286 (597)
+. -.+...|++.+|+++++...++.. ..+. .++.. . +.+ +.+. ..--.|...+-..|+..
T Consensus 178 ~yN~Ac~~i~~gky~qA~elL~kA~~~~~---------e~l~-~~d~~--e---Eei-e~el~~IrvQlayVlQ~~Gqt~ 241 (652)
T KOG2376|consen 178 LYNTACILIENGKYNQAIELLEKALRICR---------EKLE-DEDTN--E---EEI-EEELNPIRVQLAYVLQLQGQTA 241 (652)
T ss_pred HHHHHHHHHhcccHHHHHHHHHHHHHHHH---------Hhhc-ccccc--h---hhH-HHHHHHHHHHHHHHHHHhcchH
Confidence 32 334566777777777766532000 0000 00000 0 000 0000 11223344455566666
Q ss_pred HHHHHHHHhHHCCCCCCHHHHHHHH---HHHhccch-hH-------------HHHHHHHHHHHhCCCCcccHHHHHHHHH
Q 007573 287 EALRLFSGMIKMDMQPDDATLVSVF---TACSALQL-LN-------------EGRQSHVLVIRNGFEANVSVCNAVITMY 349 (597)
Q Consensus 287 ~A~~~~~~m~~~g~~p~~~~~~~ll---~~~~~~~~-~~-------------~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 349 (597)
+|.++|...++.. .+|........ .+.....+ ++ .+......+.... ......-+.++.+|
T Consensus 242 ea~~iy~~~i~~~-~~D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~q-k~~i~~N~~lL~l~ 319 (652)
T KOG2376|consen 242 EASSIYVDIIKRN-PADEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQ-KQAIYRNNALLALF 319 (652)
T ss_pred HHHHHHHHHHHhc-CCCchHHHHHhcchhhhccccccCchHHHHHHHHHHHHhHHHHHHHHHHHH-HHHHHHHHHHHHHH
Confidence 6666666666553 23332211111 11111110 01 0000111111000 01111123334444
Q ss_pred HhcCCHHHHHHHHhccCCCC-hhhHHHHHHHH--HHcCCHHHHHHHHHHHHHCCCCCC--hHHHHHHHHHHhccCcHHHH
Q 007573 350 SRCGGILDSELAFRQIHSPN-LVSWNTIIAAF--AQHGHYEKALIFFSQMGLNGFDPD--GITFLSLLSACGHAGKVNES 424 (597)
Q Consensus 350 ~~~g~~~~A~~~~~~~~~~~-~~~~~~li~~~--~~~g~~~~A~~~~~~m~~~g~~p~--~~~~~~ll~~~~~~g~~~~a 424 (597)
. +..+.+.+....+.... ...+.+++... ++...+.+|.+++...-+. .|. .......+......|+++.|
T Consensus 320 t--nk~~q~r~~~a~lp~~~p~~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~--~p~~s~~v~L~~aQl~is~gn~~~A 395 (652)
T KOG2376|consen 320 T--NKMDQVRELSASLPGMSPESLFPILLQEATKVREKKHKKAIELLLQFADG--HPEKSKVVLLLRAQLKISQGNPEVA 395 (652)
T ss_pred h--hhHHHHHHHHHhCCccCchHHHHHHHHHHHHHHHHHHhhhHHHHHHHhcc--CCchhHHHHHHHHHHHHhcCCHHHH
Confidence 3 55667777777666322 23344444332 2233577888888877654 343 34555566777889999999
Q ss_pred HHHHH--------HhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHhhCC-----CCCCHH----HHHHHHHHHHhcC
Q 007573 425 MDLFE--------LMVKVYGIIPSSEHYTCLVDILSRAGQLEKAWQITQGMP-----FEADTG----VWGSLLAACVINL 487 (597)
Q Consensus 425 ~~~~~--------~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-----~~p~~~----~~~~l~~~~~~~g 487 (597)
.+++. .+.+ +...+.+-.+++..+.+.++.+.|..++.+.. ..+... ++.-+...-.+.|
T Consensus 396 ~~il~~~~~~~~ss~~~---~~~~P~~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G 472 (652)
T KOG2376|consen 396 LEILSLFLESWKSSILE---AKHLPGTVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHG 472 (652)
T ss_pred HHHHHHHhhhhhhhhhh---hccChhHHHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcC
Confidence 99988 4432 23345566677888888887666666665443 112222 3333444455779
Q ss_pred CHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCcHHHHHHHHHH
Q 007573 488 NVELGELAAKKMRELDPQNSAVYVMLSNLYAAAGMWRDVTRVRLLM 533 (597)
Q Consensus 488 ~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 533 (597)
+-++|...++++.+.+|++..+...+.-+|+.. +.+.|..+-+.+
T Consensus 473 ~~~ea~s~leel~k~n~~d~~~l~~lV~a~~~~-d~eka~~l~k~L 517 (652)
T KOG2376|consen 473 NEEEASSLLEELVKFNPNDTDLLVQLVTAYARL-DPEKAESLSKKL 517 (652)
T ss_pred chHHHHHHHHHHHHhCCchHHHHHHHHHHHHhc-CHHHHHHHhhcC
Confidence 999999999999999999999999999888876 556666654443
No 58
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=99.38 E-value=2.2e-09 Score=108.19 Aligned_cols=461 Identities=12% Similarity=0.072 Sum_probs=241.6
Q ss_pred CCCcchHHHHHHHHHhcCChHHHHHHHhhcCCCC----cchHHHHHHHHHhCCChhHHHHHHhhCCCCCcchHHHHHHHH
Q 007573 47 TQYVFVNNAKISALSRAGKISAARQLFDQMTTKD----VITWNAIITGYWQNGFLQESKNLFQSMPVKNIVSWNCMIAGC 122 (597)
Q Consensus 47 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ll~~~ 122 (597)
.|+.++|.++|.-|+..|+++.|- +|.-|..++ -..++.++.+..+.++.+.+. +|.+.+|..|..+|
T Consensus 22 ~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk-------ep~aDtyt~Ll~ay 93 (1088)
T KOG4318|consen 22 LPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK-------EPLADTYTNLLKAY 93 (1088)
T ss_pred CCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC-------CCchhHHHHHHHHH
Confidence 566677777777777777777777 666665422 234666666666666655443 55666777777777
Q ss_pred HcCCChHHHHHHHccCCCCChhhHHHHHHHHHcCCChHHHHHHHccCC-CC-CchhHHHHHHHHHhCCChhHHHHHHHhc
Q 007573 123 IDNDRIDDAFDYFQAMPERNTATYNAMISGFLKHGRLEEATRLFEQMP-RR-NVISYTAMLDGFMKKGEVDKARALSDYM 200 (597)
Q Consensus 123 ~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m 200 (597)
...||+.. .+..++ -...+...+...|--..-..++..+. .| ....-...+......|-++.++.++..+
T Consensus 94 r~hGDli~-fe~veq-------dLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~n~illlv~eglwaqllkll~~~ 165 (1088)
T KOG4318|consen 94 RIHGDLIL-FEVVEQ-------DLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAENAILLLVLEGLWAQLLKLLAKV 165 (1088)
T ss_pred HhccchHH-HHHHHH-------HHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 77776654 111111 12223344445555444444444432 11 1111223444555667777777777666
Q ss_pred ccCC-cchHHHHHHHHHcC-CChHHHHHHHhhcCCCCCCchHHHHHHHHHHhcCCHHHHHHHHhhcCCCC----hhHHHH
Q 007573 201 SFKN-VVSWTVMITGYVKN-ERFCEARELFYRMPDYDKNVFVVTAMITGFCKVGMLENARLLFERIQPKD----CVSFNA 274 (597)
Q Consensus 201 ~~~~-~~~~~~ll~~~~~~-g~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~----~~~~~~ 274 (597)
+.-. ..+...+++-+... ..+++-........+ .|+..++..++..-...|+++.|..++..|.++. ..-|-.
T Consensus 166 Pvsa~~~p~~vfLrqnv~~ntpvekLl~~cksl~e-~~~s~~l~a~l~~alaag~~d~Ak~ll~emke~gfpir~HyFwp 244 (1088)
T KOG4318|consen 166 PVSAWNAPFQVFLRQNVVDNTPVEKLLNMCKSLVE-APTSETLHAVLKRALAAGDVDGAKNLLYEMKEKGFPIRAHYFWP 244 (1088)
T ss_pred CcccccchHHHHHHHhccCCchHHHHHHHHHHhhc-CCChHHHHHHHHHHHhcCchhhHHHHHHHHHHcCCCcccccchh
Confidence 3211 01111124433332 234444444333333 5777888888888888888888888888877642 222223
Q ss_pred HHHHHHHcCChhHHHHHHHHhHHCCCCCCHHHHHHHHHHHhccchhHHHHHHHHHHHHhCCCCccc----HHHHHHHHHH
Q 007573 275 MIAGYAQNGVAEEALRLFSGMIKMDMQPDDATLVSVFTACSALQLLNEGRQSHVLVIRNGFEANVS----VCNAVITMYS 350 (597)
Q Consensus 275 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~----~~~~l~~~~~ 350 (597)
|+-+ .++...+..+++-|...|+.|+..|+...+..+...|....+. .|.+.+.. ++..+..+..
T Consensus 245 Ll~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~~t~~~~--------e~sq~~hg~tAavrsaa~rg~~ 313 (1088)
T KOG4318|consen 245 LLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNGQTKYGE--------EGSQLAHGFTAAVRSAACRGLL 313 (1088)
T ss_pred hhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcchhhhhcc--------cccchhhhhhHHHHHHHhcccH
Confidence 3333 6677777777888888888888888877777766655432222 12222222 2222222211
Q ss_pred hcCCHHHH--HHHHhccC-------CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCC--CCCC-hHHHHHHHH-----
Q 007573 351 RCGGILDS--ELAFRQIH-------SPNLVSWNTIIAAFAQHGHYEKALIFFSQMGLNG--FDPD-GITFLSLLS----- 413 (597)
Q Consensus 351 ~~g~~~~A--~~~~~~~~-------~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g--~~p~-~~~~~~ll~----- 413 (597)
...+++.- .-+....+ ......|...+... .+|..++..++-..|..-. ..++ ...|..++.
T Consensus 314 a~k~l~~nl~~~v~~s~k~~fLlg~d~~~aiws~c~~l~-hQgk~e~veqlvg~l~npt~r~s~~~V~a~~~~lrqyFrr 392 (1088)
T KOG4318|consen 314 ANKRLRQNLRKSVIGSTKKLFLLGTDILEAIWSMCEKLR-HQGKGEEVEQLVGQLLNPTLRDSGQNVDAFGALLRQYFRR 392 (1088)
T ss_pred hHHHHHHHHHHHHHHHhhHHHHhccccchHHHHHHHHHH-HcCCCchHHHHHhhhcCCccccCcchHHHHHHHHHHHHHH
Confidence 11111111 11111111 12224454443322 2344333333333322100 0010 011111111
Q ss_pred ---------------------------------------------------------------------------HHhcc
Q 007573 414 ---------------------------------------------------------------------------ACGHA 418 (597)
Q Consensus 414 ---------------------------------------------------------------------------~~~~~ 418 (597)
.|.+.
T Consensus 393 ~e~~~~~~i~~~~qgls~~l~se~tp~vsell~~lrkns~lr~lv~Lss~Eler~he~~~~~~h~irdi~~ql~l~l~se 472 (1088)
T KOG4318|consen 393 IERHICSRIYYAGQGLSLNLNSEDTPRVSELLENLRKNSFLRQLVGLSSTELERSHEPWPLIAHLIRDIANQLHLTLNSE 472 (1088)
T ss_pred HHhhHHHHHHHHHHHHHhhhchhhhHHHHHHHHHhCcchHHHHHhhhhHHHHhcccccchhhhhHHHHHHHHHHHHHHHH
Confidence 11111
Q ss_pred CcHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHhhCC-----CCCCHHHHHHHHHHHHhcCCHHHHH
Q 007573 419 GKVNESMDLFELMVKVYGIIPSSEHYTCLVDILSRAGQLEKAWQITQGMP-----FEADTGVWGSLLAACVINLNVELGE 493 (597)
Q Consensus 419 g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-----~~p~~~~~~~l~~~~~~~g~~~~a~ 493 (597)
-+..++...-+.. +..- =+..|..|++.+....+.+.|..+.++.. ..-|..-+..+.+...+.+....+.
T Consensus 473 ~n~lK~l~~~eky-e~~l---f~g~ya~Li~l~~~hdkle~Al~~~~e~d~~d~s~~Ld~~~m~~l~dLL~r~~~l~dl~ 548 (1088)
T KOG4318|consen 473 YNKLKILCDEEKY-EDLL---FAGLYALLIKLMDLHDKLEYALSFVDEIDTRDESIHLDLPLMTSLQDLLQRLAILYDLS 548 (1088)
T ss_pred HHHHHHHHHHHHH-HHHH---hhhHHHHHhhhHHHHHHHHHHHhchhhhcccchhhhcccHhHHHHHHHHHHhHHHHHHH
Confidence 1111111110000 0000 01456778888888888888888888776 2234445777778888888888888
Q ss_pred HHHHHHHhcC---CCCCchHHHHHHHHHhcCCcHHHHHHHHHHHhCCCcc
Q 007573 494 LAAKKMRELD---PQNSAVYVMLSNLYAAAGMWRDVTRVRLLMKEQGVTK 540 (597)
Q Consensus 494 ~~~~~~~~~~---p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 540 (597)
.++.++.+.- |.-..+...+.+.....|+.+.-.++.+-+...|+.-
T Consensus 549 tiL~e~ks~a~n~~~~a~~~f~~lns~a~agqqe~Lkkl~d~lvslgl~e 598 (1088)
T KOG4318|consen 549 TILYEDKSSAENEPLVAIILFPLLNSGAPAGQQEKLKKLADILVSLGLSE 598 (1088)
T ss_pred HHHhhhhHHhhCCchHHHHHHHHHhhhhhccCHHHHHHHHHHHHHhhhhh
Confidence 8888887632 2224556677777888899988888888888877644
No 59
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=99.35 E-value=7.6e-08 Score=93.98 Aligned_cols=435 Identities=11% Similarity=0.151 Sum_probs=263.6
Q ss_pred hHHHHHHHHHhCCChhHHHHHHhhCCCC-----CcchHHHHHHHHHcCCChHHHHHHHccCCCCChhhHHHHHHHHHcCC
Q 007573 83 TWNAIITGYWQNGFLQESKNLFQSMPVK-----NIVSWNCMIAGCIDNDRIDDAFDYFQAMPERNTATYNAMISGFLKHG 157 (597)
Q Consensus 83 ~~~~li~~~~~~g~~~~A~~~~~~~~~~-----~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g 157 (597)
.|-..+..+..+|+.......|++.... ....|...+......+-.+-+..++++.++-++..-+-.+..+++.+
T Consensus 104 Iwl~Ylq~l~~Q~~iT~tR~tfdrALraLpvtqH~rIW~lyl~Fv~~~~lPets~rvyrRYLk~~P~~~eeyie~L~~~d 183 (835)
T KOG2047|consen 104 IWLDYLQFLIKQGLITRTRRTFDRALRALPVTQHDRIWDLYLKFVESHGLPETSIRVYRRYLKVAPEAREEYIEYLAKSD 183 (835)
T ss_pred HHHHHHHHHHhcchHHHHHHHHHHHHHhCchHhhccchHHHHHHHHhCCChHHHHHHHHHHHhcCHHHHHHHHHHHHhcc
Confidence 6777777777888888888877776532 55667778887777777778888888888777777777888888888
Q ss_pred ChHHHHHHHccCCCC----------CchhHHHHHHHHHhCCCh---hHHHHHHHhccc--CCc--chHHHHHHHHHcCCC
Q 007573 158 RLEEATRLFEQMPRR----------NVISYTAMLDGFMKKGEV---DKARALSDYMSF--KNV--VSWTVMITGYVKNER 220 (597)
Q Consensus 158 ~~~~A~~~~~~~~~~----------~~~~~~~li~~~~~~g~~---~~A~~~~~~m~~--~~~--~~~~~ll~~~~~~g~ 220 (597)
++++|.+.+...... +-..|+.+-+..+++.+. -....+++.+.. +|. ..|.+|.+-|.+.|.
T Consensus 184 ~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~rftDq~g~Lw~SLAdYYIr~g~ 263 (835)
T KOG2047|consen 184 RLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIRRFTDQLGFLWCSLADYYIRSGL 263 (835)
T ss_pred chHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhcccCcHHHHHHHHHHHHHHHHhhh
Confidence 888888888776532 333466555555554332 223334444422 232 457777777777777
Q ss_pred hHHHHHHHhhcCCCCCCchHHHHHHHHHHhcCCHHHHHHHH-h---hcCCCChhHHHHHHHHHHHcCChhHHHHHHHHhH
Q 007573 221 FCEARELFYRMPDYDKNVFVVTAMITGFCKVGMLENARLLF-E---RIQPKDCVSFNAMIAGYAQNGVAEEALRLFSGMI 296 (597)
Q Consensus 221 ~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~-~---~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 296 (597)
++.|..+|++....-.++.-+..+.+.|++-..-.-+..+= . ...+.+...+. -.+.-|+.+.
T Consensus 264 ~ekarDvyeeai~~v~tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~-------------~~~a~~e~lm 330 (835)
T KOG2047|consen 264 FEKARDVYEEAIQTVMTVRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVDLE-------------LHMARFESLM 330 (835)
T ss_pred hHHHHHHHHHHHHhheehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHH-------------HHHHHHHHHH
Confidence 77777777777664444555555555555432211111111 0 00001111111 1122222222
Q ss_pred HCC----------CCC-CHHHHHHHHHHHhccchhHHHHHHHHHHHHhCCCC------cccHHHHHHHHHHhcCCHHHHH
Q 007573 297 KMD----------MQP-DDATLVSVFTACSALQLLNEGRQSHVLVIRNGFEA------NVSVCNAVITMYSRCGGILDSE 359 (597)
Q Consensus 297 ~~g----------~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~------~~~~~~~l~~~~~~~g~~~~A~ 359 (597)
..+ ..| +..+|..-+. ...|+..+-...+.++++.- .| -...|..+.+.|-..|+++.|+
T Consensus 331 ~rr~~~lNsVlLRQn~~nV~eW~kRV~--l~e~~~~~~i~tyteAv~~v-dP~ka~Gs~~~Lw~~faklYe~~~~l~~aR 407 (835)
T KOG2047|consen 331 NRRPLLLNSVLLRQNPHNVEEWHKRVK--LYEGNAAEQINTYTEAVKTV-DPKKAVGSPGTLWVEFAKLYENNGDLDDAR 407 (835)
T ss_pred hccchHHHHHHHhcCCccHHHHHhhhh--hhcCChHHHHHHHHHHHHcc-CcccCCCChhhHHHHHHHHHHhcCcHHHHH
Confidence 111 011 2222222221 23344555556666665542 22 1245778888888999999999
Q ss_pred HHHhccCCCCh-------hhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCC----------C-------ChHHHHHHHHHH
Q 007573 360 LAFRQIHSPNL-------VSWNTIIAAFAQHGHYEKALIFFSQMGLNGFD----------P-------DGITFLSLLSAC 415 (597)
Q Consensus 360 ~~~~~~~~~~~-------~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~----------p-------~~~~~~~ll~~~ 415 (597)
.+|++...-+- .+|..-...-.++.+++.|++++++.....-. | +...|...+..-
T Consensus 408 vifeka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~Dle 487 (835)
T KOG2047|consen 408 VIFEKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLE 487 (835)
T ss_pred HHHHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHH
Confidence 99988774322 24555555556778888898888776542111 1 112344445555
Q ss_pred hccCcHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHhhCC--C-CCCH-HHHHHHHHHHHh---cCC
Q 007573 416 GHAGKVNESMDLFELMVKVYGIIPSSEHYTCLVDILSRAGQLEKAWQITQGMP--F-EADT-GVWGSLLAACVI---NLN 488 (597)
Q Consensus 416 ~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~-~p~~-~~~~~l~~~~~~---~g~ 488 (597)
...|-++....+++.+..-.-..|. ........+....-++++.+++++-. + -|+. ..|+..+.-+.+ ...
T Consensus 488 Es~gtfestk~vYdriidLriaTPq--ii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~k 565 (835)
T KOG2047|consen 488 ESLGTFESTKAVYDRIIDLRIATPQ--IIINYAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTK 565 (835)
T ss_pred HHhccHHHHHHHHHHHHHHhcCCHH--HHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCC
Confidence 5667888888889888875333333 22233344566778899999998855 3 3454 478887766443 236
Q ss_pred HHHHHHHHHHHHhcCCCC--CchHHHHHHHHHhcCCcHHHHHHHHHHHh
Q 007573 489 VELGELAAKKMRELDPQN--SAVYVMLSNLYAAAGMWRDVTRVRLLMKE 535 (597)
Q Consensus 489 ~~~a~~~~~~~~~~~p~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 535 (597)
.+.|..+|+++++.-|+. ...|...+..-.+-|....|++++++...
T Consensus 566 lEraRdLFEqaL~~Cpp~~aKtiyLlYA~lEEe~GLar~amsiyerat~ 614 (835)
T KOG2047|consen 566 LERARDLFEQALDGCPPEHAKTIYLLYAKLEEEHGLARHAMSIYERATS 614 (835)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHh
Confidence 899999999999977754 44566666677778888899999988653
No 60
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=99.35 E-value=3.8e-09 Score=105.13 Aligned_cols=392 Identities=13% Similarity=0.033 Sum_probs=257.5
Q ss_pred CCChhhHHHHHHHHHcCCChHHHHHHHccCCC---CCchhHHHHHHHHHhCCChhHHHHHHHhcccC----C-cchHHHH
Q 007573 140 ERNTATYNAMISGFLKHGRLEEATRLFEQMPR---RNVISYTAMLDGFMKKGEVDKARALSDYMSFK----N-VVSWTVM 211 (597)
Q Consensus 140 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----~-~~~~~~l 211 (597)
..|+.+|..|.-+..++|+++.+.+.|++... .....|+.+...|...|....|..+++....+ + ...+-..
T Consensus 320 qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~~Lma 399 (799)
T KOG4162|consen 320 QNDAAIFDHLTFALSRCGQFEVLAEQFEQALPFSFGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISVLLMA 399 (799)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchHHHHH
Confidence 45788899999999999999999999998764 34567899999999999999999998877432 2 2333333
Q ss_pred HHHHH-cCCChHHHHHHHhhcCC------CCCCchHHHHHHHHHHhc-----------CCHHHHHHHHhhcCC---CChh
Q 007573 212 ITGYV-KNERFCEARELFYRMPD------YDKNVFVVTAMITGFCKV-----------GMLENARLLFERIQP---KDCV 270 (597)
Q Consensus 212 l~~~~-~~g~~~~a~~~~~~~~~------~~~~~~~~~~l~~~~~~~-----------g~~~~A~~~~~~~~~---~~~~ 270 (597)
-..|. +.+.+++++.+-.++.+ -......+..+.-+|... ....++.+.+++..+ .|+.
T Consensus 400 sklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d~~dp~ 479 (799)
T KOG4162|consen 400 SKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFDPTDPL 479 (799)
T ss_pred HHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcCCCCch
Confidence 33443 45667776666655544 111233444444444321 123566677776643 3554
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHhHHCCCCCCHHHHHHHHHHHhccchhHHHHHHHHHHHHhCCCCcccHHHHHHHHHH
Q 007573 271 SFNAMIAGYAQNGVAEEALRLFSGMIKMDMQPDDATLVSVFTACSALQLLNEGRQSHVLVIRNGFEANVSVCNAVITMYS 350 (597)
Q Consensus 271 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 350 (597)
+...+.--|+..++.+.|++..++..+-+-..+...|..+.-.++..+++..|..+.+.....- ..|......-+..-.
T Consensus 480 ~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~-~~N~~l~~~~~~i~~ 558 (799)
T KOG4162|consen 480 VIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEF-GDNHVLMDGKIHIEL 558 (799)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHh-hhhhhhchhhhhhhh
Confidence 4445555678888999999999999988777888888888888888999999998887765431 111111111111111
Q ss_pred hcCCHHHHHHHHhc--------------------------cC-----CCCh-hhHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 007573 351 RCGGILDSELAFRQ--------------------------IH-----SPNL-VSWNTIIAAFAQHGHYEKALIFFSQMGL 398 (597)
Q Consensus 351 ~~g~~~~A~~~~~~--------------------------~~-----~~~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~ 398 (597)
..++.+++...... +. +.+. .++..+..-....+ ..+..-.. |..
T Consensus 559 ~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~~~--~~~~se~~-Lp~ 635 (799)
T KOG4162|consen 559 TFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVASQL--KSAGSELK-LPS 635 (799)
T ss_pred hcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHHhhh--hhcccccc-cCc
Confidence 23344443332222 11 0111 12222211111110 00000000 111
Q ss_pred CCCCCCh--------HHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHhhCC-C
Q 007573 399 NGFDPDG--------ITFLSLLSACGHAGKVNESMDLFELMVKVYGIIPSSEHYTCLVDILSRAGQLEKAWQITQGMP-F 469 (597)
Q Consensus 399 ~g~~p~~--------~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~ 469 (597)
..+.|.. ..+......+.+.+..++|...+.+..+ ..+.....|......+...|.+++|.+.|.... .
T Consensus 636 s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~--~~~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~l 713 (799)
T KOG4162|consen 636 STVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASK--IDPLSASVYYLRGLLLEVKGQLEEAKEAFLVALAL 713 (799)
T ss_pred ccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHh--cchhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHhc
Confidence 1122221 2344555677888899999988887764 233446778888888999999999999987765 6
Q ss_pred CCC-HHHHHHHHHHHHhcCCHHHHHH--HHHHHHhcCCCCCchHHHHHHHHHhcCCcHHHHHHHHHHHhCC
Q 007573 470 EAD-TGVWGSLLAACVINLNVELGEL--AAKKMRELDPQNSAVYVMLSNLYAAAGMWRDVTRVRLLMKEQG 537 (597)
Q Consensus 470 ~p~-~~~~~~l~~~~~~~g~~~~a~~--~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 537 (597)
.|+ +....++...+.+.|+...|.. ++..+++++|.++.+|..++.++.+.|+.++|.+-|....+-.
T Consensus 714 dP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qLe 784 (799)
T KOG4162|consen 714 DPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLDPLNHEAWYYLGEVFKKLGDSKQAAECFQAALQLE 784 (799)
T ss_pred CCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccchHHHHHHHHHHHhhc
Confidence 775 5588999999999999888888 9999999999999999999999999999999999999887744
No 61
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.31 E-value=2.6e-09 Score=98.58 Aligned_cols=276 Identities=13% Similarity=0.102 Sum_probs=167.2
Q ss_pred cCCHHHHHHHHhhcCCC---ChhHHHHHHHHHHHcCChhHHHHHHHHhHHCCCCCCHHHHHHHHHHHhccchhHHHHHHH
Q 007573 251 VGMLENARLLFERIQPK---DCVSFNAMIAGYAQNGVAEEALRLFSGMIKMDMQPDDATLVSVFTACSALQLLNEGRQSH 327 (597)
Q Consensus 251 ~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~ 327 (597)
.|++..|++...+-.+. ....|..-+.+-.+.|+.+.+-..+.+..+.--.++.....+........|+.+.|..-.
T Consensus 97 eG~~~qAEkl~~rnae~~e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~v 176 (400)
T COG3071 97 EGDFQQAEKLLRRNAEHGEQPVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAARENV 176 (400)
T ss_pred cCcHHHHHHHHHHhhhcCcchHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHHH
Confidence 57777777777665442 223444555556667777777777777766433444444555555566667777777776
Q ss_pred HHHHHhCCCCcccHHHHHHHHHHhcCCHHHHHHHHhccCCCC-----------hhhHHHHHHHHHHcCCHHHHHHHHHHH
Q 007573 328 VLVIRNGFEANVSVCNAVITMYSRCGGILDSELAFRQIHSPN-----------LVSWNTIIAAFAQHGHYEKALIFFSQM 396 (597)
Q Consensus 328 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-----------~~~~~~li~~~~~~g~~~~A~~~~~~m 396 (597)
..+.+.+ +..+.+......+|.+.|++.....++..+.+.. ..+|+.++.-....+..+.-...++..
T Consensus 177 ~~ll~~~-pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~~~ 255 (400)
T COG3071 177 DQLLEMT-PRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWKNQ 255 (400)
T ss_pred HHHHHhC-cCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHHhc
Confidence 6666665 4556666777777777777777777776665321 124555555554444444444455544
Q ss_pred HHCCCCCChHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHhhCC--CCCCHH
Q 007573 397 GLNGFDPDGITFLSLLSACGHAGKVNESMDLFELMVKVYGIIPSSEHYTCLVDILSRAGQLEKAWQITQGMP--FEADTG 474 (597)
Q Consensus 397 ~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~p~~~ 474 (597)
-.+ .+-++..-..++.-+.++|+.++|.++.++..+. +..|+. ..++ ...+-++.+.-++..++.. .+.++.
T Consensus 256 pr~-lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~-~~D~~L---~~~~-~~l~~~d~~~l~k~~e~~l~~h~~~p~ 329 (400)
T COG3071 256 PRK-LRNDPELVVAYAERLIRLGDHDEAQEIIEDALKR-QWDPRL---CRLI-PRLRPGDPEPLIKAAEKWLKQHPEDPL 329 (400)
T ss_pred cHH-hhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHh-ccChhH---HHHH-hhcCCCCchHHHHHHHHHHHhCCCChh
Confidence 332 3444555566666667777777777777776665 444441 1111 1233344433333332221 122346
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCcHHHHHHHHHHH
Q 007573 475 VWGSLLAACVINLNVELGELAAKKMRELDPQNSAVYVMLSNLYAAAGMWRDVTRVRLLMK 534 (597)
Q Consensus 475 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 534 (597)
.+.+|+..|.+++.+.+|...++.+++..|. ...|..++.++.+.|+..+|.+.+++..
T Consensus 330 L~~tLG~L~~k~~~w~kA~~~leaAl~~~~s-~~~~~~la~~~~~~g~~~~A~~~r~e~L 388 (400)
T COG3071 330 LLSTLGRLALKNKLWGKASEALEAALKLRPS-ASDYAELADALDQLGEPEEAEQVRREAL 388 (400)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHhcCCC-hhhHHHHHHHHHHcCChHHHHHHHHHHH
Confidence 6777777788888888888888877777776 4557778888888888888887777765
No 62
>PRK12370 invasion protein regulator; Provisional
Probab=99.30 E-value=1.3e-09 Score=113.35 Aligned_cols=260 Identities=14% Similarity=0.058 Sum_probs=184.1
Q ss_pred ChhHHHHHHHHHHH-----cCChhHHHHHHHHhHHCCCCCCHH-HHHHHHHHHh---------ccchhHHHHHHHHHHHH
Q 007573 268 DCVSFNAMIAGYAQ-----NGVAEEALRLFSGMIKMDMQPDDA-TLVSVFTACS---------ALQLLNEGRQSHVLVIR 332 (597)
Q Consensus 268 ~~~~~~~li~~~~~-----~g~~~~A~~~~~~m~~~g~~p~~~-~~~~ll~~~~---------~~~~~~~a~~~~~~~~~ 332 (597)
+...|...+.+... .+..++|+.+|++..+. .|+.. .+..+..++. ..++.++|...++.+++
T Consensus 255 ~~da~~~~lrg~~~~~~~~~~~~~~A~~~~~~Al~l--dP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ 332 (553)
T PRK12370 255 SIDSTMVYLRGKHELNQYTPYSLQQALKLLTQCVNM--SPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATE 332 (553)
T ss_pred ChHHHHHHHHhHHHHHccCHHHHHHHHHHHHHHHhc--CCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHh
Confidence 44555555555322 13357888888888764 55443 3333332222 33457889999988888
Q ss_pred hCCCCcccHHHHHHHHHHhcCCHHHHHHHHhccC---CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCh-HHH
Q 007573 333 NGFEANVSVCNAVITMYSRCGGILDSELAFRQIH---SPNLVSWNTIIAAFAQHGHYEKALIFFSQMGLNGFDPDG-ITF 408 (597)
Q Consensus 333 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~~~ 408 (597)
.+ +.+...+..+...+...|++++|...|++.. +.+...|..+...+...|++++|+..+++..+. .|+. ..+
T Consensus 333 ld-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l--~P~~~~~~ 409 (553)
T PRK12370 333 LD-HNNPQALGLLGLINTIHSEYIVGSLLFKQANLLSPISADIKYYYGWNLFMAGQLEEALQTINECLKL--DPTRAAAG 409 (553)
T ss_pred cC-CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCChhhH
Confidence 76 5567788888889999999999999999876 445668888899999999999999999999876 4443 233
Q ss_pred HHHHHHHhccCcHHHHHHHHHHhHHhcCCCC-ChHHHHHHHHHHhhcCCHHHHHHHHhhCC-CCCCHH-HHHHHHHHHHh
Q 007573 409 LSLLSACGHAGKVNESMDLFELMVKVYGIIP-SSEHYTCLVDILSRAGQLEKAWQITQGMP-FEADTG-VWGSLLAACVI 485 (597)
Q Consensus 409 ~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p~~~-~~~~l~~~~~~ 485 (597)
..++..+...|++++|...++++.+. ..| ++..+..+..+|...|+.++|...++++. ..|+.. .++.+...+..
T Consensus 410 ~~~~~~~~~~g~~eeA~~~~~~~l~~--~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~~~~~~~~~l~~~~~~ 487 (553)
T PRK12370 410 ITKLWITYYHTGIDDAIRLGDELRSQ--HLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQEITGLIAVNLLYAEYCQ 487 (553)
T ss_pred HHHHHHHHhccCHHHHHHHHHHHHHh--ccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccchhHHHHHHHHHHHhc
Confidence 34444566689999999999988763 234 35567788889999999999999998876 445544 45555566777
Q ss_pred cCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCcHHHHHHHHHHHhCC
Q 007573 486 NLNVELGELAAKKMRELDPQNSAVYVMLSNLYAAAGMWRDVTRVRLLMKEQG 537 (597)
Q Consensus 486 ~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 537 (597)
.| +.|...++++++..-..+.........|.-.|+-+.+..+ +++.+.+
T Consensus 488 ~g--~~a~~~l~~ll~~~~~~~~~~~~~~~~~~~~g~~~~~~~~-~~~~~~~ 536 (553)
T PRK12370 488 NS--ERALPTIREFLESEQRIDNNPGLLPLVLVAHGEAIAEKMW-NKFKNED 536 (553)
T ss_pred cH--HHHHHHHHHHHHHhhHhhcCchHHHHHHHHHhhhHHHHHH-HHhhccc
Confidence 77 4788888887764333332233377778888888877776 7776654
No 63
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.25 E-value=4.4e-08 Score=88.78 Aligned_cols=435 Identities=11% Similarity=0.061 Sum_probs=230.6
Q ss_pred HHHHHhcCChHHHHHHHhhcCCCCc----chHHHHHHHHHhCCChhHHHHHHhhCCCC---CcchHHHHHHHHHcCCChH
Q 007573 57 ISALSRAGKISAARQLFDQMTTKDV----ITWNAIITGYWQNGFLQESKNLFQSMPVK---NIVSWNCMIAGCIDNDRID 129 (597)
Q Consensus 57 ~~~~~~~g~~~~A~~~~~~~~~~~~----~~~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~ll~~~~~~~~~~ 129 (597)
+.-+....++..|+.+++--..-+. .+-..+..++.+.|++++|+..|..+.+. +...+..|.-.+.-.|.+.
T Consensus 29 Ledfls~rDytGAislLefk~~~~~EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~~~~~el~vnLAcc~FyLg~Y~ 108 (557)
T KOG3785|consen 29 LEDFLSNRDYTGAISLLEFKLNLDREEEDSLQLWIAHCYFHLGDYEEALNVYTFLMNKDDAPAELGVNLACCKFYLGQYI 108 (557)
T ss_pred HHHHHhcccchhHHHHHHHhhccchhhhHHHHHHHHHHHHhhccHHHHHHHHHHHhccCCCCcccchhHHHHHHHHHHHH
Confidence 4455566778888887775543111 12233455666778888888877776543 4445555555555567777
Q ss_pred HHHHHHccCCCCChhhHHHHHHHHHcCCChHHHHHHHccCCCCCchhHHHHHHHHHhCCChhHHHHHHHhcccCC--cch
Q 007573 130 DAFDYFQAMPERNTATYNAMISGFLKHGRLEEATRLFEQMPRRNVISYTAMLDGFMKKGEVDKARALSDYMSFKN--VVS 207 (597)
Q Consensus 130 ~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~--~~~ 207 (597)
+|..+-... +.++..-..|.+.-.+.|+-++-....+.+... ..--.+|.......-.+.+|++++.+....+ -..
T Consensus 109 eA~~~~~ka-~k~pL~~RLlfhlahklndEk~~~~fh~~LqD~-~EdqLSLAsvhYmR~HYQeAIdvYkrvL~dn~ey~a 186 (557)
T KOG3785|consen 109 EAKSIAEKA-PKTPLCIRLLFHLAHKLNDEKRILTFHSSLQDT-LEDQLSLASVHYMRMHYQEAIDVYKRVLQDNPEYIA 186 (557)
T ss_pred HHHHHHhhC-CCChHHHHHHHHHHHHhCcHHHHHHHHHHHhhh-HHHHHhHHHHHHHHHHHHHHHHHHHHHHhcChhhhh
Confidence 777766654 233444444555566666666655555444321 2233344454444556777777777774433 333
Q ss_pred HHH-HHHHHHcCCChHHHHHHHhhcCCCCCCch-HHHHHHHHHHhcCCHHHHHHHHhhcCCCChhHHHHHHHHHHHc---
Q 007573 208 WTV-MITGYVKNERFCEARELFYRMPDYDKNVF-VVTAMITGFCKVGMLENARLLFERIQPKDCVSFNAMIAGYAQN--- 282 (597)
Q Consensus 208 ~~~-ll~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~--- 282 (597)
.|. +.-+|.+..-++-+.+++....+.-||.. ..|..+....|.=+-..|..-...+...-...|. .+.-++++
T Consensus 187 lNVy~ALCyyKlDYydvsqevl~vYL~q~pdStiA~NLkacn~fRl~ngr~ae~E~k~ladN~~~~~~-f~~~l~rHNLV 265 (557)
T KOG3785|consen 187 LNVYMALCYYKLDYYDVSQEVLKVYLRQFPDSTIAKNLKACNLFRLINGRTAEDEKKELADNIDQEYP-FIEYLCRHNLV 265 (557)
T ss_pred hHHHHHHHHHhcchhhhHHHHHHHHHHhCCCcHHHHHHHHHHHhhhhccchhHHHHHHHHhcccccch-hHHHHHHcCeE
Confidence 443 33455666667777777766655444433 3333333333321111122212222111111111 12222222
Q ss_pred --CChhHHHHHHHHhHHCCCCCCHHHHHHHHHHHhccchhHHHHHHHHHHHHhCCCCc-ccHHHHHHHHHHhcC------
Q 007573 283 --GVAEEALRLFSGMIKMDMQPDDATLVSVFTACSALQLLNEGRQSHVLVIRNGFEAN-VSVCNAVITMYSRCG------ 353 (597)
Q Consensus 283 --g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g------ 353 (597)
...+.|++++-.+.+ +.|... ..++-.+.+.+++.+|..+.+++ .|. +.-|-.-.-.++..|
T Consensus 266 vFrngEgALqVLP~L~~--~IPEAR--lNL~iYyL~q~dVqeA~~L~Kdl-----~PttP~EyilKgvv~aalGQe~gSr 336 (557)
T KOG3785|consen 266 VFRNGEGALQVLPSLMK--HIPEAR--LNLIIYYLNQNDVQEAISLCKDL-----DPTTPYEYILKGVVFAALGQETGSR 336 (557)
T ss_pred EEeCCccHHHhchHHHh--hChHhh--hhheeeecccccHHHHHHHHhhc-----CCCChHHHHHHHHHHHHhhhhcCcH
Confidence 234566666655544 233322 23444556777777776655433 222 211211111222222
Q ss_pred -CHHHHHHHHhccCC-----CChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHhccCcHHHHHHH
Q 007573 354 -GILDSELAFRQIHS-----PNLVSWNTIIAAFAQHGHYEKALIFFSQMGLNGFDPDGITFLSLLSACGHAGKVNESMDL 427 (597)
Q Consensus 354 -~~~~A~~~~~~~~~-----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~ 427 (597)
.+.-|++.|+...+ ..+.--.++.+.+.-..++++.+.++.....-- ..|...-..+..+.+..|.+.+|.++
T Consensus 337 eHlKiAqqffqlVG~Sa~ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi~sYF-~NdD~Fn~N~AQAk~atgny~eaEel 415 (557)
T KOG3785|consen 337 EHLKIAQQFFQLVGESALECDTIPGRQSMASYFFLSFQFDDVLTYLNSIESYF-TNDDDFNLNLAQAKLATGNYVEAEEL 415 (557)
T ss_pred HHHHHHHHHHHHhcccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCcchhhhHHHHHHHHhcChHHHHHH
Confidence 24455566654431 223344556666666667777777777665542 33333333466777777888888888
Q ss_pred HHHhHHhcCCCCChHHH-HHHHHHHhhcCCHHHHHHHHhhCCCCCCHHHHHHHH-HHHHhcCCHHHHHHHHHHHHhcCCC
Q 007573 428 FELMVKVYGIIPSSEHY-TCLVDILSRAGQLEKAWQITQGMPFEADTGVWGSLL-AACVINLNVELGELAAKKMRELDPQ 505 (597)
Q Consensus 428 ~~~~~~~~~~~p~~~~~-~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~-~~~~~~g~~~~a~~~~~~~~~~~p~ 505 (597)
|-.+... .+ .+..+| ..|...|.++++++-|++++-++..+.+..+...+| .-|.+.+.+--|-+.|+.+-.++|.
T Consensus 416 f~~is~~-~i-kn~~~Y~s~LArCyi~nkkP~lAW~~~lk~~t~~e~fsLLqlIAn~CYk~~eFyyaaKAFd~lE~lDP~ 493 (557)
T KOG3785|consen 416 FIRISGP-EI-KNKILYKSMLARCYIRNKKPQLAWDMMLKTNTPSERFSLLQLIANDCYKANEFYYAAKAFDELEILDPT 493 (557)
T ss_pred HhhhcCh-hh-hhhHHHHHHHHHHHHhcCCchHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHccCCC
Confidence 7665421 22 233444 345677778888888888877776333444444444 4477777777777777777777776
Q ss_pred C
Q 007573 506 N 506 (597)
Q Consensus 506 ~ 506 (597)
+
T Consensus 494 p 494 (557)
T KOG3785|consen 494 P 494 (557)
T ss_pred c
Confidence 4
No 64
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.25 E-value=6e-08 Score=87.89 Aligned_cols=449 Identities=12% Similarity=0.095 Sum_probs=273.7
Q ss_pred CcchHHHHHHHHHhcCChHHHHHHHhhcCC---CCcchHHHHHHHHHhCCChhHHHHHHhhCCCCCcchHHHHHHHHHcC
Q 007573 49 YVFVNNAKISALSRAGKISAARQLFDQMTT---KDVITWNAIITGYWQNGFLQESKNLFQSMPVKNIVSWNCMIAGCIDN 125 (597)
Q Consensus 49 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~ 125 (597)
+...| +...|.+.|++++|..++.-+.+ ++...|-.|.-.+.-.|.+.+|..+-.+..+ ++-.--.+.....+.
T Consensus 58 ~~~lW--ia~C~fhLgdY~~Al~~Y~~~~~~~~~~~el~vnLAcc~FyLg~Y~eA~~~~~ka~k-~pL~~RLlfhlahkl 134 (557)
T KOG3785|consen 58 SLQLW--IAHCYFHLGDYEEALNVYTFLMNKDDAPAELGVNLACCKFYLGQYIEAKSIAEKAPK-TPLCIRLLFHLAHKL 134 (557)
T ss_pred HHHHH--HHHHHHhhccHHHHHHHHHHHhccCCCCcccchhHHHHHHHHHHHHHHHHHHhhCCC-ChHHHHHHHHHHHHh
Confidence 34444 45567789999999999998765 5666777787777788999999998887753 333333444555677
Q ss_pred CChHHHHHHHccCCCCChhhHHHHHHHHHcCCChHHHHHHHccCCCC--CchhHHH-HHHHHHhCCChhHHHHHHHhc--
Q 007573 126 DRIDDAFDYFQAMPERNTATYNAMISGFLKHGRLEEATRLFEQMPRR--NVISYTA-MLDGFMKKGEVDKARALSDYM-- 200 (597)
Q Consensus 126 ~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~-li~~~~~~g~~~~A~~~~~~m-- 200 (597)
++-.+-....+.+... ..-.-+|....-..-.+.+|++++.++... +-...|. +.-+|.+..-++-+.++++--
T Consensus 135 ndEk~~~~fh~~LqD~-~EdqLSLAsvhYmR~HYQeAIdvYkrvL~dn~ey~alNVy~ALCyyKlDYydvsqevl~vYL~ 213 (557)
T KOG3785|consen 135 NDEKRILTFHSSLQDT-LEDQLSLASVHYMRMHYQEAIDVYKRVLQDNPEYIALNVYMALCYYKLDYYDVSQEVLKVYLR 213 (557)
T ss_pred CcHHHHHHHHHHHhhh-HHHHHhHHHHHHHHHHHHHHHHHHHHHHhcChhhhhhHHHHHHHHHhcchhhhHHHHHHHHHH
Confidence 7777777666665422 233344555544555689999999998763 3344444 445677778777777776655
Q ss_pred ccCC-cchHHHHHHHHHcCCChHHHHHHHhhcCC-CCCCchHHHHHHHHHHhc-----CCHHHHHHHHhhcCCCChhHHH
Q 007573 201 SFKN-VVSWTVMITGYVKNERFCEARELFYRMPD-YDKNVFVVTAMITGFCKV-----GMLENARLLFERIQPKDCVSFN 273 (597)
Q Consensus 201 ~~~~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~-~~~~~~~~~~l~~~~~~~-----g~~~~A~~~~~~~~~~~~~~~~ 273 (597)
..|| ....|..+....+.=.-..|++-...+.+ .... .-.+.-+++. .+-+.|++++-.+.+.=+.+--
T Consensus 214 q~pdStiA~NLkacn~fRl~ngr~ae~E~k~ladN~~~~----~~f~~~l~rHNLVvFrngEgALqVLP~L~~~IPEARl 289 (557)
T KOG3785|consen 214 QFPDSTIAKNLKACNLFRLINGRTAEDEKKELADNIDQE----YPFIEYLCRHNLVVFRNGEGALQVLPSLMKHIPEARL 289 (557)
T ss_pred hCCCcHHHHHHHHHHHhhhhccchhHHHHHHHHhccccc----chhHHHHHHcCeEEEeCCccHHHhchHHHhhChHhhh
Confidence 2344 34445444333332222222222222222 1111 1122333332 2346677777665554444555
Q ss_pred HHHHHHHHcCChhHHHHHHHHhHHCCCCCCHHHHHHHHHH-----HhccchhHHHHHHHHHHHHhCCCCcccH-HHHHHH
Q 007573 274 AMIAGYAQNGVAEEALRLFSGMIKMDMQPDDATLVSVFTA-----CSALQLLNEGRQSHVLVIRNGFEANVSV-CNAVIT 347 (597)
Q Consensus 274 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~-----~~~~~~~~~a~~~~~~~~~~~~~~~~~~-~~~l~~ 347 (597)
.|+--|.++++..+|..+.+++.- ..|-......+..+ ......+.-|.+.++.+-.++...|+.. -.++..
T Consensus 290 NL~iYyL~q~dVqeA~~L~Kdl~P--ttP~EyilKgvv~aalGQe~gSreHlKiAqqffqlVG~Sa~ecDTIpGRQsmAs 367 (557)
T KOG3785|consen 290 NLIIYYLNQNDVQEAISLCKDLDP--TTPYEYILKGVVFAALGQETGSREHLKIAQQFFQLVGESALECDTIPGRQSMAS 367 (557)
T ss_pred hheeeecccccHHHHHHHHhhcCC--CChHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHhcccccccccccchHHHHH
Confidence 666678888999999888776532 23444333333332 2234456677788887777766555433 345555
Q ss_pred HHHhcCCHHHHHHHHhccC----CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCChHHHHHH-HHHHhccCcHH
Q 007573 348 MYSRCGGILDSELAFRQIH----SPNLVSWNTIIAAFAQHGHYEKALIFFSQMGLNGFDPDGITFLSL-LSACGHAGKVN 422 (597)
Q Consensus 348 ~~~~~g~~~~A~~~~~~~~----~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l-l~~~~~~g~~~ 422 (597)
.+.-..++++++..++.+. ..|...+| +.++++..|++.+|.++|-+.....+ -|..+|..+ .+++.+.+.++
T Consensus 368 ~fFL~~qFddVl~YlnSi~sYF~NdD~Fn~N-~AQAk~atgny~eaEelf~~is~~~i-kn~~~Y~s~LArCyi~nkkP~ 445 (557)
T KOG3785|consen 368 YFFLSFQFDDVLTYLNSIESYFTNDDDFNLN-LAQAKLATGNYVEAEELFIRISGPEI-KNKILYKSMLARCYIRNKKPQ 445 (557)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCcchhhhH-HHHHHHHhcChHHHHHHHhhhcChhh-hhhHHHHHHHHHHHHhcCCch
Confidence 5666677888888887776 33444444 67888999999999999976643322 345566555 47788999999
Q ss_pred HHHHHHHHhHHhcCCCCChH-HHHHHHHHHhhcCCHHHHHHHHhhCC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 007573 423 ESMDLFELMVKVYGIIPSSE-HYTCLVDILSRAGQLEKAWQITQGMP-FEADTGVWGSLLAACVINLNVELGELAAKKMR 500 (597)
Q Consensus 423 ~a~~~~~~~~~~~~~~p~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 500 (597)
.|+.++-.+ +.+.+.. ....+..-|.+++.+=-|.+.|+.+. ..|++.-|..--.+| ..+|..+.
T Consensus 446 lAW~~~lk~----~t~~e~fsLLqlIAn~CYk~~eFyyaaKAFd~lE~lDP~pEnWeGKRGAC---------aG~f~~l~ 512 (557)
T KOG3785|consen 446 LAWDMMLKT----NTPSERFSLLQLIANDCYKANEFYYAAKAFDELEILDPTPENWEGKRGAC---------AGLFRQLA 512 (557)
T ss_pred HHHHHHHhc----CCchhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHccCCCccccCCccchH---------HHHHHHHH
Confidence 998876543 3222333 33345567788888888888888776 678888886544444 23444444
Q ss_pred h--cCCCCCchHHHHHHHHHhcCC
Q 007573 501 E--LDPQNSAVYVMLSNLYAAAGM 522 (597)
Q Consensus 501 ~--~~p~~~~~~~~l~~~~~~~g~ 522 (597)
. .+|.+.....-+...+...++
T Consensus 513 ~~~~~~~p~~~~rEVvhllr~~~n 536 (557)
T KOG3785|consen 513 NHKTDPIPISQMREVVHLLRMKPN 536 (557)
T ss_pred cCCCCCCchhHHHHHHHHHHhCCC
Confidence 2 344444445555555555444
No 65
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.24 E-value=2e-09 Score=106.46 Aligned_cols=192 Identities=14% Similarity=0.192 Sum_probs=139.2
Q ss_pred HHHHHHHhcCCHHHHHHHHhccC--------CC---ChhhHHHHHHHHHHcCCHHHHHHHHHHHHH-----CCC-CCCh-
Q 007573 344 AVITMYSRCGGILDSELAFRQIH--------SP---NLVSWNTIIAAFAQHGHYEKALIFFSQMGL-----NGF-DPDG- 405 (597)
Q Consensus 344 ~l~~~~~~~g~~~~A~~~~~~~~--------~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-----~g~-~p~~- 405 (597)
.+...|...+++.+|..+|+++. +. -..+++.|...|.+.|++++|..++++..+ .|. .|..
T Consensus 246 ~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~ 325 (508)
T KOG1840|consen 246 ILALVYRSLGKYDEAVNLYEEALTIREEVFGEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVA 325 (508)
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHH
Confidence 45556666666666666666554 11 123666677778888888777777666542 121 2222
Q ss_pred HHHHHHHHHHhccCcHHHHHHHHHHhHHhcC--CCCC----hHHHHHHHHHHhhcCCHHHHHHHHhhCC-------C--C
Q 007573 406 ITFLSLLSACGHAGKVNESMDLFELMVKVYG--IIPS----SEHYTCLVDILSRAGQLEKAWQITQGMP-------F--E 470 (597)
Q Consensus 406 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~--~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~-------~--~ 470 (597)
..++.+...|...+++++|..++....+.+. ..++ ..+++.|...|...|++++|+++++++. . .
T Consensus 326 ~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~ 405 (508)
T KOG1840|consen 326 AQLSELAAILQSMNEYEEAKKLLQKALKIYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKD 405 (508)
T ss_pred HHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcC
Confidence 2466677788889999999998887766543 2222 4678999999999999999999998764 1 2
Q ss_pred CC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhc----CCCC---CchHHHHHHHHHhcCCcHHHHHHHHHHHh
Q 007573 471 AD-TGVWGSLLAACVINLNVELGELAAKKMREL----DPQN---SAVYVMLSNLYAAAGMWRDVTRVRLLMKE 535 (597)
Q Consensus 471 p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~p~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 535 (597)
+. ...++.+...|.+.++..+|.++|.+...+ +|+. ..+|..|+.+|...|++++|.++.+.+..
T Consensus 406 ~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~~ 478 (508)
T KOG1840|consen 406 YGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIMKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVLN 478 (508)
T ss_pred hhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence 22 346788889999999999999999988753 4554 56688999999999999999999998864
No 66
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.23 E-value=5.1e-10 Score=99.95 Aligned_cols=229 Identities=12% Similarity=0.019 Sum_probs=147.5
Q ss_pred HHHHHHHHHcCChhHHHHHHHHhHHCCCCCCHHHHHHHHHHHhccchhHHHHHHHHHHHHhCCCCcccHHHHHHHHHHhc
Q 007573 273 NAMIAGYAQNGVAEEALRLFSGMIKMDMQPDDATLVSVFTACSALQLLNEGRQSHVLVIRNGFEANVSVCNAVITMYSRC 352 (597)
Q Consensus 273 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 352 (597)
+.+.++|.+.|-+.+|.+.|+..++. .|-..||..+-.+|.+..+...|..++.+-++.- +
T Consensus 227 ~Q~gkCylrLgm~r~AekqlqssL~q--~~~~dTfllLskvY~ridQP~~AL~~~~~gld~f-P---------------- 287 (478)
T KOG1129|consen 227 QQMGKCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDSF-P---------------- 287 (478)
T ss_pred HHHHHHHHHhcChhhhHHHHHHHhhc--CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhcC-C----------------
Confidence 45667777777777777777666654 3333444444444444444444444444433321 2
Q ss_pred CCHHHHHHHHhccCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHhccCcHHHHHHHHHHhH
Q 007573 353 GGILDSELAFRQIHSPNLVSWNTIIAAFAQHGHYEKALIFFSQMGLNGFDPDGITFLSLLSACGHAGKVNESMDLFELMV 432 (597)
Q Consensus 353 g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~ 432 (597)
.|+.....+...+-..++.++|.++++...+.. +.+......+...|.-.++++-|+.+++++.
T Consensus 288 ---------------~~VT~l~g~ARi~eam~~~~~a~~lYk~vlk~~-~~nvEaiAcia~~yfY~~~PE~AlryYRRiL 351 (478)
T KOG1129|consen 288 ---------------FDVTYLLGQARIHEAMEQQEDALQLYKLVLKLH-PINVEAIACIAVGYFYDNNPEMALRYYRRIL 351 (478)
T ss_pred ---------------chhhhhhhhHHHHHHHHhHHHHHHHHHHHHhcC-CccceeeeeeeeccccCCChHHHHHHHHHHH
Confidence 223333334445555566666666666665542 3334444455555556666666666666666
Q ss_pred HhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHhhCC---CCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCC
Q 007573 433 KVYGIIPSSEHYTCLVDILSRAGQLEKAWQITQGMP---FEAD--TGVWGSLLAACVINLNVELGELAAKKMRELDPQNS 507 (597)
Q Consensus 433 ~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~p~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~ 507 (597)
+- |+ -+++.|..+.-.|.-.++++-++.-|++.. ..|+ ..+|..+.......||+..|.+.|+-++..+|++.
T Consensus 352 qm-G~-~speLf~NigLCC~yaqQ~D~~L~sf~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~h~ 429 (478)
T KOG1129|consen 352 QM-GA-QSPELFCNIGLCCLYAQQIDLVLPSFQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQHG 429 (478)
T ss_pred Hh-cC-CChHHHhhHHHHHHhhcchhhhHHHHHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCcchH
Confidence 54 43 345566666666666666666666665543 2343 45788888888889999999999999999999999
Q ss_pred chHHHHHHHHHhcCCcHHHHHHHHHHHhCCC
Q 007573 508 AVYVMLSNLYAAAGMWRDVTRVRLLMKEQGV 538 (597)
Q Consensus 508 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 538 (597)
..+++|+-.-.+.|++++|..++.......+
T Consensus 430 ealnNLavL~~r~G~i~~Arsll~~A~s~~P 460 (478)
T KOG1129|consen 430 EALNNLAVLAARSGDILGARSLLNAAKSVMP 460 (478)
T ss_pred HHHHhHHHHHhhcCchHHHHHHHHHhhhhCc
Confidence 9999999999999999999999998876543
No 67
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.23 E-value=1.3e-09 Score=93.04 Aligned_cols=162 Identities=17% Similarity=0.163 Sum_probs=141.2
Q ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC-hHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCC-hHHHHHHHH
Q 007573 372 SWNTIIAAFAQHGHYEKALIFFSQMGLNGFDPD-GITFLSLLSACGHAGKVNESMDLFELMVKVYGIIPS-SEHYTCLVD 449 (597)
Q Consensus 372 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~ 449 (597)
+...+.-+|...|+...|..-+++.++. .|+ ..++..+...|.+.|..+.|.+.|++..+ +.|+ ..+.|....
T Consensus 37 arlqLal~YL~~gd~~~A~~nlekAL~~--DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAls---l~p~~GdVLNNYG~ 111 (250)
T COG3063 37 ARLQLALGYLQQGDYAQAKKNLEKALEH--DPSYYLAHLVRAHYYQKLGENDLADESYRKALS---LAPNNGDVLNNYGA 111 (250)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHh--CcccHHHHHHHHHHHHHcCChhhHHHHHHHHHh---cCCCccchhhhhhH
Confidence 3455677899999999999999999886 454 56888888999999999999999998874 4554 778899999
Q ss_pred HHhhcCCHHHHHHHHhhCCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCcHH
Q 007573 450 ILSRAGQLEKAWQITQGMPFEAD----TGVWGSLLAACVINLNVELGELAAKKMRELDPQNSAVYVMLSNLYAAAGMWRD 525 (597)
Q Consensus 450 ~~~~~g~~~~A~~~~~~~~~~p~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~ 525 (597)
-+|..|++++|...|++....|+ ..+|..++.+..+.|+++.|...+++.++++|+.+.....+.....+.|++-.
T Consensus 112 FLC~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~~~~~l~~a~~~~~~~~y~~ 191 (250)
T COG3063 112 FLCAQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQFPPALLELARLHYKAGDYAP 191 (250)
T ss_pred HHHhCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcCCChHHHHHHHHHHhcccchH
Confidence 99999999999999998775554 55888898888999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhCCC
Q 007573 526 VTRVRLLMKEQGV 538 (597)
Q Consensus 526 A~~~~~~~~~~~~ 538 (597)
|..+++.....+.
T Consensus 192 Ar~~~~~~~~~~~ 204 (250)
T COG3063 192 ARLYLERYQQRGG 204 (250)
T ss_pred HHHHHHHHHhccc
Confidence 9999998877653
No 68
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.23 E-value=2.2e-09 Score=102.01 Aligned_cols=212 Identities=12% Similarity=0.077 Sum_probs=145.3
Q ss_pred chhHHHHHHHHHHHHhC-CCC--cccHHHHHHHHHHhcCCHHHHHHHHhccC---CCChhhHHHHHHHHHHcCCHHHHHH
Q 007573 318 QLLNEGRQSHVLVIRNG-FEA--NVSVCNAVITMYSRCGGILDSELAFRQIH---SPNLVSWNTIIAAFAQHGHYEKALI 391 (597)
Q Consensus 318 ~~~~~a~~~~~~~~~~~-~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~ 391 (597)
+..+.+..-+.+++... ..| ....+..+...|.+.|+.++|...|++.. +.+...|+.+...+...|++++|.+
T Consensus 40 ~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~A~~ 119 (296)
T PRK11189 40 LQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALRPDMADAYNYLGIYLTQAGNFDAAYE 119 (296)
T ss_pred hHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHH
Confidence 34455555566666432 122 23457777888889999999999888775 4567789999999999999999999
Q ss_pred HHHHHHHCCCCCC-hHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHhhCC--
Q 007573 392 FFSQMGLNGFDPD-GITFLSLLSACGHAGKVNESMDLFELMVKVYGIIPSSEHYTCLVDILSRAGQLEKAWQITQGMP-- 468 (597)
Q Consensus 392 ~~~~m~~~g~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-- 468 (597)
.|++..+. .|+ ..++..+..++...|++++|.+.|+...+. .|+..........+...++.++|.+.+++..
T Consensus 120 ~~~~Al~l--~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~---~P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~~ 194 (296)
T PRK11189 120 AFDSVLEL--DPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQD---DPNDPYRALWLYLAESKLDPKQAKENLKQRYEK 194 (296)
T ss_pred HHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHccCCHHHHHHHHHHHHhh
Confidence 99998864 454 567777888888899999999999988764 3443222222233456778999999986543
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH-------hcCCCCCchHHHHHHHHHhcCCcHHHHHHHHHHHhCCC
Q 007573 469 FEADTGVWGSLLAACVINLNVELGELAAKKMR-------ELDPQNSAVYVMLSNLYAAAGMWRDVTRVRLLMKEQGV 538 (597)
Q Consensus 469 ~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~-------~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 538 (597)
..|+...| . ......|+...+ ..++.+. +++|+.+.+|..++.++...|++++|+..|++..+.++
T Consensus 195 ~~~~~~~~-~--~~~~~lg~~~~~-~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~~ 267 (296)
T PRK11189 195 LDKEQWGW-N--IVEFYLGKISEE-TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANNV 267 (296)
T ss_pred CCccccHH-H--HHHHHccCCCHH-HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC
Confidence 23332222 2 222234444333 2333333 44556678899999999999999999999999887653
No 69
>PRK12370 invasion protein regulator; Provisional
Probab=99.23 E-value=2.1e-09 Score=111.68 Aligned_cols=211 Identities=11% Similarity=0.032 Sum_probs=164.9
Q ss_pred chhHHHHHHHHHHHHhCCCCcccHHHHHHHHHHh---------cCCHHHHHHHHhccC---CCChhhHHHHHHHHHHcCC
Q 007573 318 QLLNEGRQSHVLVIRNGFEANVSVCNAVITMYSR---------CGGILDSELAFRQIH---SPNLVSWNTIIAAFAQHGH 385 (597)
Q Consensus 318 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~---------~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~ 385 (597)
++.++|...+++.++.. +.+...+..+..+|.. .+++++|...+++.. +.+...+..+...+...|+
T Consensus 275 ~~~~~A~~~~~~Al~ld-P~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ldP~~~~a~~~lg~~~~~~g~ 353 (553)
T PRK12370 275 YSLQQALKLLTQCVNMS-PNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELDHNNPQALGLLGLINTIHSE 353 (553)
T ss_pred HHHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccC
Confidence 45788999999988775 3345566666655542 245789999998876 4567788888888999999
Q ss_pred HHHHHHHHHHHHHCCCCCChHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCC-hHHHHHHHHHHhhcCCHHHHHHHH
Q 007573 386 YEKALIFFSQMGLNGFDPDGITFLSLLSACGHAGKVNESMDLFELMVKVYGIIPS-SEHYTCLVDILSRAGQLEKAWQIT 464 (597)
Q Consensus 386 ~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~ 464 (597)
+++|...|++..+.. +.+...+..+..++...|++++|...++++.+. .|+ ...+..++..+...|++++|...+
T Consensus 354 ~~~A~~~~~~Al~l~-P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l---~P~~~~~~~~~~~~~~~~g~~eeA~~~~ 429 (553)
T PRK12370 354 YIVGSLLFKQANLLS-PISADIKYYYGWNLFMAGQLEEALQTINECLKL---DPTRAAAGITKLWITYYHTGIDDAIRLG 429 (553)
T ss_pred HHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc---CCCChhhHHHHHHHHHhccCHHHHHHHH
Confidence 999999999998863 334667888888999999999999999998854 454 233344555677789999999999
Q ss_pred hhCC--CCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCcHHHHHHHHHHHh
Q 007573 465 QGMP--FEAD-TGVWGSLLAACVINLNVELGELAAKKMRELDPQNSAVYVMLSNLYAAAGMWRDVTRVRLLMKE 535 (597)
Q Consensus 465 ~~~~--~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 535 (597)
++.. .+|+ +..+..+..++...|+.++|...++++....|.+......++..|...| ++|...++.+.+
T Consensus 430 ~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~a~~~l~~ll~ 501 (553)
T PRK12370 430 DELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQEITGLIAVNLLYAEYCQNS--ERALPTIREFLE 501 (553)
T ss_pred HHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccchhHHHHHHHHHHHhccH--HHHHHHHHHHHH
Confidence 8865 2354 4457777888889999999999999998888888888888888888888 488888888765
No 70
>PF13041 PPR_2: PPR repeat family
Probab=99.22 E-value=4.2e-11 Score=79.38 Aligned_cols=50 Identities=32% Similarity=0.689 Sum_probs=45.9
Q ss_pred CChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHhc
Q 007573 368 PNLVSWNTIIAAFAQHGHYEKALIFFSQMGLNGFDPDGITFLSLLSACGH 417 (597)
Q Consensus 368 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~ 417 (597)
||..+||++|.+|++.|++++|.++|++|.+.|+.||..||+.++++|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 78899999999999999999999999999999999999999999998874
No 71
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=99.22 E-value=2.8e-07 Score=92.48 Aligned_cols=234 Identities=13% Similarity=0.117 Sum_probs=168.1
Q ss_pred CCCcchHHHHHHH--HHhcCChHHHHHHHhhcCCCCcchHHHHHHHHHhCCChhHHHHHHhhCCCC-----------Cc-
Q 007573 47 TQYVFVNNAKISA--LSRAGKISAARQLFDQMTTKDVITWNAIITGYWQNGFLQESKNLFQSMPVK-----------NI- 112 (597)
Q Consensus 47 ~~~~~~~~~l~~~--~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-----------~~- 112 (597)
..|..+-..+++. |..-|+.+.|.+..+-+... ..|..|.+.+.+..+.+-|.-.+..|... |.
T Consensus 723 ~Cd~~TRkaml~FSfyvtiG~MD~AfksI~~IkS~--~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~~~ 800 (1416)
T KOG3617|consen 723 NCDESTRKAMLDFSFYVTIGSMDAAFKSIQFIKSD--SVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQNGE 800 (1416)
T ss_pred ccCHHHHHhhhceeEEEEeccHHHHHHHHHHHhhh--HHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhCCc
Confidence 5666677666654 45679999998877666543 46999999999988888888777777521 22
Q ss_pred chHHHHHHHHHcCCChHHHHHHHccCCCCChhhHHHHHHHHHcCCChHHHHHHHccCCCC-CchhHHHHHHHHHhCCChh
Q 007573 113 VSWNCMIAGCIDNDRIDDAFDYFQAMPERNTATYNAMISGFLKHGRLEEATRLFEQMPRR-NVISYTAMLDGFMKKGEVD 191 (597)
Q Consensus 113 ~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~li~~~~~~g~~~ 191 (597)
..-..+.-.....|.+++|+.++++... |..|=..|-..|.+++|.++-+.-.+- =..||.....-+-..++.+
T Consensus 801 e~eakvAvLAieLgMlEeA~~lYr~ckR-----~DLlNKlyQs~g~w~eA~eiAE~~DRiHLr~Tyy~yA~~Lear~Di~ 875 (1416)
T KOG3617|consen 801 EDEAKVAVLAIELGMLEEALILYRQCKR-----YDLLNKLYQSQGMWSEAFEIAETKDRIHLRNTYYNYAKYLEARRDIE 875 (1416)
T ss_pred chhhHHHHHHHHHhhHHHHHHHHHHHHH-----HHHHHHHHHhcccHHHHHHHHhhccceehhhhHHHHHHHHHhhccHH
Confidence 3333444445578899999999987743 444667788889999999887653331 1235666677777788899
Q ss_pred HHHHHHHhc-----------------------ccCCcchHHHHHHHHHcCCChHHHHHHHhhcCCCCCCchHHHHHHHHH
Q 007573 192 KARALSDYM-----------------------SFKNVVSWTVMITGYVKNERFCEARELFYRMPDYDKNVFVVTAMITGF 248 (597)
Q Consensus 192 ~A~~~~~~m-----------------------~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~l~~~~ 248 (597)
.|++.|++. ...|...|.-....+-..|+.+.|+.+|..+.+ |-++++..
T Consensus 876 ~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D-------~fs~VrI~ 948 (1416)
T KOG3617|consen 876 AALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKD-------YFSMVRIK 948 (1416)
T ss_pred HHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhh-------hhhheeeE
Confidence 999998877 123555566666777788999999999988765 66677777
Q ss_pred HhcCCHHHHHHHHhhcCCCChhHHHHHHHHHHHcCChhHHHHHHHHhH
Q 007573 249 CKVGMLENARLLFERIQPKDCVSFNAMIAGYAQNGVAEEALRLFSGMI 296 (597)
Q Consensus 249 ~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 296 (597)
|-.|+.++|-++-++- .|..+...+.+.|-..|++.+|+..|.+.+
T Consensus 949 C~qGk~~kAa~iA~es--gd~AAcYhlaR~YEn~g~v~~Av~FfTrAq 994 (1416)
T KOG3617|consen 949 CIQGKTDKAARIAEES--GDKAACYHLARMYENDGDVVKAVKFFTRAQ 994 (1416)
T ss_pred eeccCchHHHHHHHhc--ccHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence 7778888887777653 355566677888888888888888887654
No 72
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.22 E-value=4.8e-09 Score=96.82 Aligned_cols=200 Identities=15% Similarity=0.100 Sum_probs=122.6
Q ss_pred hhHHHHHHHHHHHcCChhHHHHHHHHhHHCCCCCCHHHHHHHHHHHhccchhHHHHHHHHHHHHhCCCCcccHHHHHHHH
Q 007573 269 CVSFNAMIAGYAQNGVAEEALRLFSGMIKMDMQPDDATLVSVFTACSALQLLNEGRQSHVLVIRNGFEANVSVCNAVITM 348 (597)
Q Consensus 269 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 348 (597)
...+..+...+...|++++|...+++..+.. +.+...+..+...+...|+.+.|...+....+..
T Consensus 31 ~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-------------- 95 (234)
T TIGR02521 31 AKIRVQLALGYLEQGDLEVAKENLDKALEHD-PDDYLAYLALALYYQQLGELEKAEDSFRRALTLN-------------- 95 (234)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--------------
Confidence 4567777777888888888888887776542 1123333333444444444444444444443332
Q ss_pred HHhcCCHHHHHHHHhccCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC-ChHHHHHHHHHHhccCcHHHHHHH
Q 007573 349 YSRCGGILDSELAFRQIHSPNLVSWNTIIAAFAQHGHYEKALIFFSQMGLNGFDP-DGITFLSLLSACGHAGKVNESMDL 427 (597)
Q Consensus 349 ~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~g~~~~a~~~ 427 (597)
+.+...+..+...+...|++++|.+.+++.......| ....+..+..++...|++++|...
T Consensus 96 ------------------~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 157 (234)
T TIGR02521 96 ------------------PNNGDVLNNYGTFLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKY 157 (234)
T ss_pred ------------------CCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHH
Confidence 2334455556666667777777777777766532222 234455566667777777777777
Q ss_pred HHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHhhCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 007573 428 FELMVKVYGIIPSSEHYTCLVDILSRAGQLEKAWQITQGMP--FEADTGVWGSLLAACVINLNVELGELAAKKMRELD 503 (597)
Q Consensus 428 ~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 503 (597)
+++..+. .+.+...+..+...+...|++++|...+++.. .+.+...+..+...+...|+.++|..+.+.+.+..
T Consensus 158 ~~~~~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 233 (234)
T TIGR02521 158 LTRALQI--DPQRPESLLELAELYYLRGQYKDARAYLERYQQTYNQTAESLWLGIRIARALGDVAAAQRYGAQLQKLF 233 (234)
T ss_pred HHHHHHh--CcCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhhC
Confidence 7777653 22235566677777777888888877777654 23345556666666777788888887777766554
No 73
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=99.22 E-value=7.4e-08 Score=94.34 Aligned_cols=456 Identities=10% Similarity=0.054 Sum_probs=265.6
Q ss_pred HHHHHHHhCCChhHHHHHHhhCCCC---CcchHHHHHHHHHcCCChHHHHHHHccCC---CCChhhHHHHHHHHHcCCCh
Q 007573 86 AIITGYWQNGFLQESKNLFQSMPVK---NIVSWNCMIAGCIDNDRIDDAFDYFQAMP---ERNTATYNAMISGFLKHGRL 159 (597)
Q Consensus 86 ~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~ll~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~g~~ 159 (597)
.++..| ..+++...+.+.+.+.+. ...|.....-.+...|+.++|......-. ..+.+.|..+.-.+....++
T Consensus 13 ~~lk~y-E~kQYkkgLK~~~~iL~k~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~~S~vCwHv~gl~~R~dK~Y 91 (700)
T KOG1156|consen 13 RALKCY-ETKQYKKGLKLIKQILKKFPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDLKSHVCWHVLGLLQRSDKKY 91 (700)
T ss_pred HHHHHH-HHHHHHhHHHHHHHHHHhCCccchhHHhccchhhcccchHHHHHHHHHHhccCcccchhHHHHHHHHhhhhhH
Confidence 344443 345566666666655543 44444444445566777777777776665 33456777777777777778
Q ss_pred HHHHHHHccCCC---CCchhHHHHHHHHHhCCChhHHHHHHHhcc---cCCcchHHHHHHHHHcCCChHHHHHHHhhcCC
Q 007573 160 EEATRLFEQMPR---RNVISYTAMLDGFMKKGEVDKARALSDYMS---FKNVVSWTVMITGYVKNERFCEARELFYRMPD 233 (597)
Q Consensus 160 ~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~---~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 233 (597)
++|++.|..... .|...|.-+.-.-++.|+++.....-.... ......|..++.++.-.|++..|..+++...+
T Consensus 92 ~eaiKcy~nAl~~~~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~~~~ra~w~~~Avs~~L~g~y~~A~~il~ef~~ 171 (700)
T KOG1156|consen 92 DEAIKCYRNALKIEKDNLQILRDLSLLQIQMRDYEGYLETRNQLLQLRPSQRASWIGFAVAQHLLGEYKMALEILEEFEK 171 (700)
T ss_pred HHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888888776543 344455544444455666666655544442 22345677777777777888888777777665
Q ss_pred C---CCCchHHHHH------HHHHHhcCCHHHHHHHHhhcCCC--C-hhHHHHHHHHHHHcCChhHHHHHHHHhHHCCCC
Q 007573 234 Y---DKNVFVVTAM------ITGFCKVGMLENARLLFERIQPK--D-CVSFNAMIAGYAQNGVAEEALRLFSGMIKMDMQ 301 (597)
Q Consensus 234 ~---~~~~~~~~~l------~~~~~~~g~~~~A~~~~~~~~~~--~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~ 301 (597)
. .|+...+.-. .....+.|.+++|.+.+....+. | ...-.+-...+.+.++.++|..++..++.. .
T Consensus 172 t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~r--n 249 (700)
T KOG1156|consen 172 TQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQIVDKLAFEETKADLLMKLGQLEEAVKVYRRLLER--N 249 (700)
T ss_pred hhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhHHHHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhh--C
Confidence 2 2444433221 23345667777777776665543 2 223334556667777777777777777764 5
Q ss_pred CCHHHHHHHHHHHhc-c-chhHHHHHHHHHHHHhCCCCcccHHHHHHHHHHhcCCHHHHHHHHhccCCCChhhHHHHHHH
Q 007573 302 PDDATLVSVFTACSA-L-QLLNEGRQSHVLVIRNGFEANVSVCNAVITMYSRCGGILDSELAFRQIHSPNLVSWNTIIAA 379 (597)
Q Consensus 302 p~~~~~~~ll~~~~~-~-~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~ 379 (597)
||...|...+..+.- . +..+....++....+.-. .-..|-....+ .
T Consensus 250 Pdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~y~----------------------------r~e~p~Rlpls----v 297 (700)
T KOG1156|consen 250 PDNLDYYEGLEKALGKIKDMLEALKALYAILSEKYP----------------------------RHECPRRLPLS----V 297 (700)
T ss_pred chhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhcCc----------------------------ccccchhccHH----H
Confidence 666655544433221 1 111111122211111100 00001001111 1
Q ss_pred HHHcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHhccCcHH---H-HHHHHHHhHHh---------cCCCCChH--HH
Q 007573 380 FAQHGHYEKALIFFSQMGLNGFDPDGITFLSLLSACGHAGKVN---E-SMDLFELMVKV---------YGIIPSSE--HY 444 (597)
Q Consensus 380 ~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~---~-a~~~~~~~~~~---------~~~~p~~~--~~ 444 (597)
.....-.+..-+++..+.+.|+++--..+.. .+-.....+ + +..+...+... ..-+|... ++
T Consensus 298 l~~eel~~~vdkyL~~~l~Kg~p~vf~dl~S---Lyk~p~k~~~le~Lvt~y~~~L~~~~~f~~~D~~~~E~PttllWt~ 374 (700)
T KOG1156|consen 298 LNGEELKEIVDKYLRPLLSKGVPSVFKDLRS---LYKDPEKVAFLEKLVTSYQHSLSGTGMFNFLDDGKQEPPTTLLWTL 374 (700)
T ss_pred hCcchhHHHHHHHHHHHhhcCCCchhhhhHH---HHhchhHhHHHHHHHHHHHhhcccccCCCcccccccCCchHHHHHH
Confidence 1111223444556667777776553332222 222211111 0 11111111100 00145544 34
Q ss_pred HHHHHHHhhcCCHHHHHHHHhhCC-CCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCC
Q 007573 445 TCLVDILSRAGQLEKAWQITQGMP-FEADTG-VWGSLLAACVINLNVELGELAAKKMRELDPQNSAVYVMLSNLYAAAGM 522 (597)
Q Consensus 445 ~~l~~~~~~~g~~~~A~~~~~~~~-~~p~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 522 (597)
-.++..+-+.|+++.|+.+++... ..|+.. .|..-...+.+.|+.++|...++++.+++-.|..+-..-+.-..+..+
T Consensus 375 y~laqh~D~~g~~~~A~~yId~AIdHTPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD~aDR~INsKcAKYmLrAn~ 454 (700)
T KOG1156|consen 375 YFLAQHYDKLGDYEVALEYIDLAIDHTPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELDTADRAINSKCAKYMLRANE 454 (700)
T ss_pred HHHHHHHHHcccHHHHHHHHHHHhccCchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhccchhHHHHHHHHHHHHHccc
Confidence 457788899999999999999876 556643 566667889999999999999999999998877766678888899999
Q ss_pred cHHHHHHHHHHHhCCCcc-----CCCeeEEEECCEEEEEEeCCCCCcchHHHHHHHHHHHHHHhhcCCccchhcccc
Q 007573 523 WRDVTRVRLLMKEQGVTK-----QCAYSWIEIGNKVHYFLGGDMSHPCIDKIHLELKRASVQMKSVDDFVEIATSWS 594 (597)
Q Consensus 523 ~~~A~~~~~~~~~~~~~~-----~~~~s~~~~~~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 594 (597)
.++|.++.....+.|... +..+.|. --+..+.+....+.....++...+..++..|+
T Consensus 455 i~eA~~~~skFTr~~~~~~~~L~~mqcmWf---------------~~E~g~ay~r~~k~g~ALKkfh~i~k~~~~~~ 516 (700)
T KOG1156|consen 455 IEEAEEVLSKFTREGFGAVNNLAEMQCMWF---------------QLEDGEAYLRQNKLGLALKKFHEIEKHYKTWS 516 (700)
T ss_pred cHHHHHHHHHhhhcccchhhhHHHhhhHHH---------------hHhhhHHHHHHHHHHHHHHHHhhHHHHHHHHh
Confidence 999999998887776411 1122332 12334567777778889999999999999996
No 74
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=99.21 E-value=1.1e-07 Score=94.14 Aligned_cols=440 Identities=15% Similarity=0.141 Sum_probs=254.4
Q ss_pred HHHHHHHhcCChHHHHHHHhhc--CCCCcchHHHHHHHHHhCCChhHHHHHHhhCCCCCcchHHHHHHHHHcCCChHHHH
Q 007573 55 AKISALSRAGKISAARQLFDQM--TTKDVITWNAIITGYWQNGFLQESKNLFQSMPVKNIVSWNCMIAGCIDNDRIDDAF 132 (597)
Q Consensus 55 ~l~~~~~~~g~~~~A~~~~~~~--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~ 132 (597)
+.|+.|.+.|.+..|.+.-..- ...|......+..++.+..-+++|-.+|+++..++. .+..+-+.+-+..|.
T Consensus 620 aaiqlyika~~p~~a~~~a~n~~~l~~de~il~~ia~alik~elydkagdlfeki~d~dk-----ale~fkkgdaf~kai 694 (1636)
T KOG3616|consen 620 AAIQLYIKAGKPAKAARAALNDEELLADEEILEHIAAALIKGELYDKAGDLFEKIHDFDK-----ALECFKKGDAFGKAI 694 (1636)
T ss_pred HHHHHHHHcCCchHHHHhhcCHHHhhccHHHHHHHHHHHHhhHHHHhhhhHHHHhhCHHH-----HHHHHHcccHHHHHH
Confidence 4467777777777666543221 113444444455555555556666666666654321 111111111122222
Q ss_pred HHHccCC-------------------CCCh--------hhHHHHHHHHHcCCChHHHHHHHccCCCCCch--hHHHHHHH
Q 007573 133 DYFQAMP-------------------ERNT--------ATYNAMISGFLKHGRLEEATRLFEQMPRRNVI--SYTAMLDG 183 (597)
Q Consensus 133 ~~~~~~~-------------------~~~~--------~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~--~~~~li~~ 183 (597)
++-+..- +-|. ......+.+-.+...+.+|+.+++.+...++. -|..+.+.
T Consensus 695 elarfafp~evv~lee~wg~hl~~~~q~daainhfiea~~~~kaieaai~akew~kai~ildniqdqk~~s~yy~~iadh 774 (1636)
T KOG3616|consen 695 ELARFAFPEEVVKLEEAWGDHLEQIGQLDAAINHFIEANCLIKAIEAAIGAKEWKKAISILDNIQDQKTASGYYGEIADH 774 (1636)
T ss_pred HHHHhhCcHHHhhHHHHHhHHHHHHHhHHHHHHHHHHhhhHHHHHHHHhhhhhhhhhHhHHHHhhhhccccccchHHHHH
Confidence 2221111 0010 11112234555667788888888888765544 37788889
Q ss_pred HHhCCChhHHHHHHHhcccCCcchHHHHHHHHHcCCChHHHHHHHhhcCCCCCCchHHHHHHHHHHhcCCHHHHHHHHhh
Q 007573 184 FMKKGEVDKARALSDYMSFKNVVSWTVMITGYVKNERFCEARELFYRMPDYDKNVFVVTAMITGFCKVGMLENARLLFER 263 (597)
Q Consensus 184 ~~~~g~~~~A~~~~~~m~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 263 (597)
|...|+++.|.++|-+. ..++..+..|.+.|+++.|.++-.+...-......|.+-..-+-+.|++.+|.+++-.
T Consensus 775 yan~~dfe~ae~lf~e~-----~~~~dai~my~k~~kw~da~kla~e~~~~e~t~~~yiakaedldehgkf~eaeqlyit 849 (1636)
T KOG3616|consen 775 YANKGDFEIAEELFTEA-----DLFKDAIDMYGKAGKWEDAFKLAEECHGPEATISLYIAKAEDLDEHGKFAEAEQLYIT 849 (1636)
T ss_pred hccchhHHHHHHHHHhc-----chhHHHHHHHhccccHHHHHHHHHHhcCchhHHHHHHHhHHhHHhhcchhhhhheeEE
Confidence 99999999999998654 4566778889999999999999888877444556677777778889999999999988
Q ss_pred cCCCChhHHHHHHHHHHHcCChhHHHHHHHHhHHCCCCCCHHHHHHHHHHHhccchhHHHHHHHHHHHHhCCCCcccHHH
Q 007573 264 IQPKDCVSFNAMIAGYAQNGVAEEALRLFSGMIKMDMQPDDATLVSVFTACSALQLLNEGRQSHVLVIRNGFEANVSVCN 343 (597)
Q Consensus 264 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 343 (597)
+..|+. .|..|-+.|..+..+++..+-...-+ ..|-..+..-+...|++..|+.-|-+.. -|.
T Consensus 850 i~~p~~-----aiqmydk~~~~ddmirlv~k~h~d~l---~dt~~~f~~e~e~~g~lkaae~~flea~---------d~k 912 (1636)
T KOG3616|consen 850 IGEPDK-----AIQMYDKHGLDDDMIRLVEKHHGDHL---HDTHKHFAKELEAEGDLKAAEEHFLEAG---------DFK 912 (1636)
T ss_pred ccCchH-----HHHHHHhhCcchHHHHHHHHhChhhh---hHHHHHHHHHHHhccChhHHHHHHHhhh---------hHH
Confidence 888764 47788899999998888775432111 2334445556667788888877654432 356
Q ss_pred HHHHHHHhcCCHHHHHHHHhccCCCChh-----hHHH------HHHHH-------------HHcCCHHHHHHHHHHHHHC
Q 007573 344 AVITMYSRCGGILDSELAFRQIHSPNLV-----SWNT------IIAAF-------------AQHGHYEKALIFFSQMGLN 399 (597)
Q Consensus 344 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~-----~~~~------li~~~-------------~~~g~~~~A~~~~~~m~~~ 399 (597)
+-+++|...+.+++|.++-+.-...|.. .|.. .+..+ +..+.++-|.++-+-..+.
T Consensus 913 aavnmyk~s~lw~dayriaktegg~n~~k~v~flwaksiggdaavkllnk~gll~~~id~a~d~~afd~afdlari~~k~ 992 (1636)
T KOG3616|consen 913 AAVNMYKASELWEDAYRIAKTEGGANAEKHVAFLWAKSIGGDAAVKLLNKHGLLEAAIDFAADNCAFDFAFDLARIAAKD 992 (1636)
T ss_pred HHHHHhhhhhhHHHHHHHHhccccccHHHHHHHHHHHhhCcHHHHHHHHhhhhHHHHhhhhhcccchhhHHHHHHHhhhc
Confidence 6778888888888888877654422221 2211 11222 2333344444443333222
Q ss_pred CCCCChHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCC-------CCChHHH---------HHHHHHHhhcCCHHHHHHH
Q 007573 400 GFDPDGITFLSLLSACGHAGKVNESMDLFELMVKVYGI-------IPSSEHY---------TCLVDILSRAGQLEKAWQI 463 (597)
Q Consensus 400 g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~-------~p~~~~~---------~~l~~~~~~~g~~~~A~~~ 463 (597)
. .|. ....+...+...|++++|-+.+-+.++.... .|+..-. ..-+.++.+..+++.|.++
T Consensus 993 k-~~~--vhlk~a~~ledegk~edaskhyveaiklntynitwcqavpsrfd~e~ir~gnkpe~av~mfi~dndwa~aerv 1069 (1636)
T KOG3616|consen 993 K-MGE--VHLKLAMFLEDEGKFEDASKHYVEAIKLNTYNITWCQAVPSRFDAEFIRAGNKPEEAVEMFIHDNDWAAAERV 1069 (1636)
T ss_pred c-Ccc--chhHHhhhhhhccchhhhhHhhHHHhhcccccchhhhcccchhhHHHHHcCCChHHHHHHhhhcccHHHHHHH
Confidence 1 222 2333444566789999998877776653111 1111000 0123344455555555555
Q ss_pred HhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCcHHHHHHHHH
Q 007573 464 TQGMPFEADTGVWGSLLAACVINLNVELGELAAKKMRELDPQNSAVYVMLSNLYAAAGMWRDVTRVRLL 532 (597)
Q Consensus 464 ~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 532 (597)
-+.--...-+.++..-..+....|++.+|+.++-++ ..|+ ..++-|...+.|.+|+++-+.
T Consensus 1070 ae~h~~~~l~dv~tgqar~aiee~d~~kae~fllra--nkp~------i~l~yf~e~~lw~dalri~kd 1130 (1636)
T KOG3616|consen 1070 AEAHCEDLLADVLTGQARGAIEEGDFLKAEGFLLRA--NKPD------IALNYFIEAELWPDALRIAKD 1130 (1636)
T ss_pred HHhhChhhhHHHHhhhhhccccccchhhhhhheeec--CCCc------hHHHHHHHhccChHHHHHHHh
Confidence 443321111334555555666778888888776443 2232 234556667777777766543
No 75
>PF13041 PPR_2: PPR repeat family
Probab=99.19 E-value=6.5e-11 Score=78.46 Aligned_cols=50 Identities=36% Similarity=0.604 Sum_probs=47.3
Q ss_pred CChhHHHHHHHHHHHcCChhHHHHHHHHhHHCCCCCCHHHHHHHHHHHhc
Q 007573 267 KDCVSFNAMIAGYAQNGVAEEALRLFSGMIKMDMQPDDATLVSVFTACSA 316 (597)
Q Consensus 267 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~ 316 (597)
||+.+||++|.+|++.|++++|.++|++|.+.|++||..||+.++.+|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 68899999999999999999999999999999999999999999999874
No 76
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.19 E-value=6.9e-10 Score=99.12 Aligned_cols=230 Identities=14% Similarity=0.116 Sum_probs=179.4
Q ss_pred HHHHHHHHhcCCHHHHHHHHhhcCC--CChhHHHHHHHHHHHcCChhHHHHHHHHhHHCCCCCCHHHHHH-HHHHHhccc
Q 007573 242 TAMITGFCKVGMLENARLLFERIQP--KDCVSFNAMIAGYAQNGVAEEALRLFSGMIKMDMQPDDATLVS-VFTACSALQ 318 (597)
Q Consensus 242 ~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~-ll~~~~~~~ 318 (597)
+-+..+|.+.|.+.+|.+.|+...+ +-+.||-.|-++|.+..++..|+.++.+-.+. .|-.+|+.. ..+.+...+
T Consensus 227 ~Q~gkCylrLgm~r~AekqlqssL~q~~~~dTfllLskvY~ridQP~~AL~~~~~gld~--fP~~VT~l~g~ARi~eam~ 304 (478)
T KOG1129|consen 227 QQMGKCYLRLGMPRRAEKQLQSSLTQFPHPDTFLLLSKVYQRIDQPERALLVIGEGLDS--FPFDVTYLLGQARIHEAME 304 (478)
T ss_pred HHHHHHHHHhcChhhhHHHHHHHhhcCCchhHHHHHHHHHHHhccHHHHHHHHhhhhhc--CCchhhhhhhhHHHHHHHH
Confidence 6789999999999999999988654 57789999999999999999999999987764 677777643 223333344
Q ss_pred hhHHHHHHHHHHHHhCCCCcccHHHHHHHHHHhcCCHHHHHHHHhccCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 007573 319 LLNEGRQSHVLVIRNGFEANVSVCNAVITMYSRCGGILDSELAFRQIHSPNLVSWNTIIAAFAQHGHYEKALIFFSQMGL 398 (597)
Q Consensus 319 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 398 (597)
..+.+.++++.+.+.. +.++.+...+..+|.-.++++-|+.+++++.+
T Consensus 305 ~~~~a~~lYk~vlk~~--------------------------------~~nvEaiAcia~~yfY~~~PE~AlryYRRiLq 352 (478)
T KOG1129|consen 305 QQEDALQLYKLVLKLH--------------------------------PINVEAIACIAVGYFYDNNPEMALRYYRRILQ 352 (478)
T ss_pred hHHHHHHHHHHHHhcC--------------------------------CccceeeeeeeeccccCCChHHHHHHHHHHHH
Confidence 4444444444443332 34555666666778888999999999999998
Q ss_pred CCCCCChHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCC--hHHHHHHHHHHhhcCCHHHHHHHHhhCC-CCC-CHH
Q 007573 399 NGFDPDGITFLSLLSACGHAGKVNESMDLFELMVKVYGIIPS--SEHYTCLVDILSRAGQLEKAWQITQGMP-FEA-DTG 474 (597)
Q Consensus 399 ~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p-~~~ 474 (597)
-| ..++..|..+.-+|.-.+++|-++.-|.+.... -..|+ ..+|-.+.......|++.-|.+.|+-.. ..| +..
T Consensus 353 mG-~~speLf~NigLCC~yaqQ~D~~L~sf~RAlst-at~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~h~e 430 (478)
T KOG1129|consen 353 MG-AQSPELFCNIGLCCLYAQQIDLVLPSFQRALST-ATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQHGE 430 (478)
T ss_pred hc-CCChHHHhhHHHHHHhhcchhhhHHHHHHHHhh-ccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCcchHH
Confidence 88 456778888888888999999999988888764 34454 5678888888889999999999998765 444 456
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCC
Q 007573 475 VWGSLLAACVINLNVELGELAAKKMRELDPQNS 507 (597)
Q Consensus 475 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~ 507 (597)
.++.|.-.-.+.|++++|..++..+....|.-.
T Consensus 431 alnNLavL~~r~G~i~~Arsll~~A~s~~P~m~ 463 (478)
T KOG1129|consen 431 ALNNLAVLAARSGDILGARSLLNAAKSVMPDMA 463 (478)
T ss_pred HHHhHHHHHhhcCchHHHHHHHHHhhhhCcccc
Confidence 889888888899999999999999999888753
No 77
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.17 E-value=3.2e-07 Score=85.11 Aligned_cols=408 Identities=11% Similarity=-0.012 Sum_probs=251.3
Q ss_pred ChhhHHHHHHHHHcCCChHHHHHHHccCCCC-CchhHHHHHHHHHhCC-ChhHHHHHHHhcccCCcchHHHHHHHHHcCC
Q 007573 142 NTATYNAMISGFLKHGRLEEATRLFEQMPRR-NVISYTAMLDGFMKKG-EVDKARALSDYMSFKNVVSWTVMITGYVKNE 219 (597)
Q Consensus 142 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~li~~~~~~g-~~~~A~~~~~~m~~~~~~~~~~ll~~~~~~g 219 (597)
+...-...+..|...++.+.|...+.+.+.. ...--+.|+.-+.+.| +..++.--+...+..-+..... |.+..+.+
T Consensus 96 ~~e~~r~~aecy~~~~n~~~Ai~~l~~~p~t~r~p~inlMla~l~~~g~r~~~~vl~ykevvrecp~aL~~-i~~ll~l~ 174 (564)
T KOG1174|consen 96 DAEQRRRAAECYRQIGNTDMAIETLLQVPPTLRSPRINLMLARLQHHGSRHKEAVLAYKEVIRECPMALQV-IEALLELG 174 (564)
T ss_pred cHHHHHHHHHHHHHHccchHHHHHHhcCCccccchhHHHHHHHHHhccccccHHHHhhhHHHHhcchHHHH-HHHHHHHh
Confidence 4455556788888999999999999888753 3333444444444443 3323222222221111111111 11111111
Q ss_pred ChHHHHHHHhhcC--CCCCCchHHHHHHHHHH--hcCCHHHHHHHHhhcC-----CCChhHHHHHHHHHHHcCChhHHHH
Q 007573 220 RFCEARELFYRMP--DYDKNVFVVTAMITGFC--KVGMLENARLLFERIQ-----PKDCVSFNAMIAGYAQNGVAEEALR 290 (597)
Q Consensus 220 ~~~~a~~~~~~~~--~~~~~~~~~~~l~~~~~--~~g~~~~A~~~~~~~~-----~~~~~~~~~li~~~~~~g~~~~A~~ 290 (597)
+..+...-..|. ...|.......-+.+++ -.++...|...+-.+. +.|+.....+.+.+...|+.++|+.
T Consensus 175 -v~g~e~~S~~m~~~~~~~~~dwls~wika~Aq~~~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~ 253 (564)
T KOG1174|consen 175 -VNGNEINSLVMHAATVPDHFDWLSKWIKALAQMFNFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAED 253 (564)
T ss_pred -hcchhhhhhhhhheecCCCccHHHHHHHHHHHHHhcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHH
Confidence 001111111111 12333333333344433 3455555554443322 3477888999999999999999999
Q ss_pred HHHHhHHCCCCCCHHHHHHH-HHHHhccchhHHHHHHHHHHHHhCCCCcccHHHHHHHHHHhcCCHHHHHHHHhccCC--
Q 007573 291 LFSGMIKMDMQPDDATLVSV-FTACSALQLLNEGRQSHVLVIRNGFEANVSVCNAVITMYSRCGGILDSELAFRQIHS-- 367 (597)
Q Consensus 291 ~~~~m~~~g~~p~~~~~~~l-l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-- 367 (597)
.|++.+- +.|+..+-.-+ .-.+...|+.+....+...+.... ..+...|-.-.......++++.|..+-++...
T Consensus 254 ~Fe~~~~--~dpy~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~-~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~ 330 (564)
T KOG1174|consen 254 IFSSTLC--ANPDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAKV-KYTASHWFVHAQLLYDEKKFERALNFVEKCIDSE 330 (564)
T ss_pred HHHHHhh--CChhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhhh-hcchhhhhhhhhhhhhhhhHHHHHHHHHHHhccC
Confidence 9998765 34544331111 112345677777766665554432 12222333333444556778888887777663
Q ss_pred -CChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChHHHHH
Q 007573 368 -PNLVSWNTIIAAFAQHGHYEKALIFFSQMGLNGFDPDGITFLSLLSACGHAGKVNESMDLFELMVKVYGIIPSSEHYTC 446 (597)
Q Consensus 368 -~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~ 446 (597)
.+...+-.-...+...|++++|.-.|+..+... +-+-..|..++.+|...|...+|.-.-+...+. +.-+..+...
T Consensus 331 ~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~La-p~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~--~~~sA~~LtL 407 (564)
T KOG1174|consen 331 PRNHEALILKGRLLIALERHTQAVIAFRTAQMLA-PYRLEIYRGLFHSYLAQKRFKEANALANWTIRL--FQNSARSLTL 407 (564)
T ss_pred cccchHHHhccHHHHhccchHHHHHHHHHHHhcc-hhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHH--hhcchhhhhh
Confidence 344444444466778899999999999887642 345678999999999999999988777766653 3334445444
Q ss_pred HH-HHHh-hcCCHHHHHHHHhhCC-CCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCC
Q 007573 447 LV-DILS-RAGQLEKAWQITQGMP-FEADT-GVWGSLLAACVINLNVELGELAAKKMRELDPQNSAVYVMLSNLYAAAGM 522 (597)
Q Consensus 447 l~-~~~~-~~g~~~~A~~~~~~~~-~~p~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 522 (597)
+. ..+. .-..-++|.+++++.. .+|+- ...+.+...|...|..+.++.++++.+...|+ ......|++.+...+.
T Consensus 408 ~g~~V~~~dp~~rEKAKkf~ek~L~~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~~~D-~~LH~~Lgd~~~A~Ne 486 (564)
T KOG1174|consen 408 FGTLVLFPDPRMREKAKKFAEKSLKINPIYTPAVNLIAELCQVEGPTKDIIKLLEKHLIIFPD-VNLHNHLGDIMRAQNE 486 (564)
T ss_pred hcceeeccCchhHHHHHHHHHhhhccCCccHHHHHHHHHHHHhhCccchHHHHHHHHHhhccc-cHHHHHHHHHHHHhhh
Confidence 42 2332 2234578888888765 77764 46677778888999999999999999988887 4557889999999999
Q ss_pred cHHHHHHHHHHHhCCCccCCCeeEEEECCEEEEEEeCCCCCcchHHHHHHHHHHHHHHhhcC
Q 007573 523 WRDVTRVRLLMKEQGVTKQCAYSWIEIGNKVHYFLGGDMSHPCIDKIHLELKRASVQMKSVD 584 (597)
Q Consensus 523 ~~~A~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~ 584 (597)
+++|.+.|..... .+|+.+...+-+++|.++++.++
T Consensus 487 ~Q~am~~y~~ALr--------------------------~dP~~~~sl~Gl~~lEK~~~~~D 522 (564)
T KOG1174|consen 487 PQKAMEYYYKALR--------------------------QDPKSKRTLRGLRLLEKSDDESD 522 (564)
T ss_pred HHHHHHHHHHHHh--------------------------cCccchHHHHHHHHHHhccCCCC
Confidence 9999998887654 36777788888888888777544
No 78
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.17 E-value=2e-08 Score=95.44 Aligned_cols=203 Identities=11% Similarity=-0.013 Sum_probs=131.8
Q ss_pred HHHHHHHHhccchhHHHHHHHHHHHHhCCCCcccHHHHHHHHHHhcCCHHHHHHHHhccC---CCChhhHHHHHHHHHHc
Q 007573 307 LVSVFTACSALQLLNEGRQSHVLVIRNGFEANVSVCNAVITMYSRCGGILDSELAFRQIH---SPNLVSWNTIIAAFAQH 383 (597)
Q Consensus 307 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~ 383 (597)
|......+...|+.+.|...+...++.. +.+...++.+...+...|++++|...|+... +.+..+|..+...+...
T Consensus 67 ~~~~g~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~ 145 (296)
T PRK11189 67 HYERGVLYDSLGLRALARNDFSQALALR-PDMADAYNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAYLNRGIALYYG 145 (296)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHC
Confidence 3333444455555555555555555543 4456677778888888888888888888775 34466788888888899
Q ss_pred CCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCH--HHHH
Q 007573 384 GHYEKALIFFSQMGLNGFDPDGITFLSLLSACGHAGKVNESMDLFELMVKVYGIIPSSEHYTCLVDILSRAGQL--EKAW 461 (597)
Q Consensus 384 g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~--~~A~ 461 (597)
|++++|++.|++..+. .|+..........+...++.++|.+.+..... ...|+...+ .+...+ .|+. +++.
T Consensus 146 g~~~eA~~~~~~al~~--~P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~--~~~~~~~~~-~~~~~~--lg~~~~~~~~ 218 (296)
T PRK11189 146 GRYELAQDDLLAFYQD--DPNDPYRALWLYLAESKLDPKQAKENLKQRYE--KLDKEQWGW-NIVEFY--LGKISEETLM 218 (296)
T ss_pred CCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHccCCHHHHHHHHHHHHh--hCCccccHH-HHHHHH--ccCCCHHHHH
Confidence 9999999999998875 45543222222334556789999999977654 333433222 333333 4443 3333
Q ss_pred HHHhhC-C----CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC-CchHHHHHHHH
Q 007573 462 QITQGM-P----FEA-DTGVWGSLLAACVINLNVELGELAAKKMRELDPQN-SAVYVMLSNLY 517 (597)
Q Consensus 462 ~~~~~~-~----~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~-~~~~~~l~~~~ 517 (597)
+.+.+. . ..| ....|..++..+...|++++|+..|+++++.+|.+ ......++...
T Consensus 219 ~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~~~~~~e~~~~~~e~~ 281 (296)
T PRK11189 219 ERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANNVYNFVEHRYALLELA 281 (296)
T ss_pred HHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCchHHHHHHHHHHHH
Confidence 333321 1 112 34578999999999999999999999999999865 44444444443
No 79
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=99.15 E-value=6.1e-08 Score=87.52 Aligned_cols=308 Identities=15% Similarity=0.103 Sum_probs=168.1
Q ss_pred HHHHHHHHhCCChhHHHHHHHhcccCCcchHHHHH---HHHHcCCChHHHHHHHhhcCCCCCCchHH-HHHHHHHHhcCC
Q 007573 178 TAMLDGFMKKGEVDKARALSDYMSFKNVVSWTVMI---TGYVKNERFCEARELFYRMPDYDKNVFVV-TAMITGFCKVGM 253 (597)
Q Consensus 178 ~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~ll---~~~~~~g~~~~a~~~~~~~~~~~~~~~~~-~~l~~~~~~~g~ 253 (597)
..+.+.+...|++..|+.-|...+.-|+..|.++. ..|...|+-.-|+.-+...++++||.... .--...+.+.|.
T Consensus 42 lElGk~lla~~Q~sDALt~yHaAve~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlelKpDF~~ARiQRg~vllK~Ge 121 (504)
T KOG0624|consen 42 LELGKELLARGQLSDALTHYHAAVEGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLELKPDFMAARIQRGVVLLKQGE 121 (504)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhcCCccchhhHHHHHhcCccHHHHHHHhchhhhhccc
Confidence 34566666777777777777777766666555543 45677777777777777777777775432 233456677788
Q ss_pred HHHHHHHHhhcCCCChhHHHHHHHHHHHcCChhHHHHHHHHhHHCCCCCCHHHHHHHHHHHhccchhHHHHHHHHHHHHh
Q 007573 254 LENARLLFERIQPKDCVSFNAMIAGYAQNGVAEEALRLFSGMIKMDMQPDDATLVSVFTACSALQLLNEGRQSHVLVIRN 333 (597)
Q Consensus 254 ~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 333 (597)
++.|..-|+.+...++.- +....++.+.-..++-.. ....+..+...|+...+......+++.
T Consensus 122 le~A~~DF~~vl~~~~s~-~~~~eaqskl~~~~e~~~----------------l~~ql~s~~~~GD~~~ai~~i~~llEi 184 (504)
T KOG0624|consen 122 LEQAEADFDQVLQHEPSN-GLVLEAQSKLALIQEHWV----------------LVQQLKSASGSGDCQNAIEMITHLLEI 184 (504)
T ss_pred HHHHHHHHHHHHhcCCCc-chhHHHHHHHHhHHHHHH----------------HHHHHHHHhcCCchhhHHHHHHHHHhc
Confidence 888888777766543310 000001111000011111 111222333445555555555555554
Q ss_pred CCCCcccHHHHHHHHHHhcCCHHHHHHHHhccC---CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCChHH-HH
Q 007573 334 GFEANVSVCNAVITMYSRCGGILDSELAFRQIH---SPNLVSWNTIIAAFAQHGHYEKALIFFSQMGLNGFDPDGIT-FL 409 (597)
Q Consensus 334 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~-~~ 409 (597)
. +.+...+..-..+|...|++..|+.-++... ..+....--+-..+...|+.+.++...++-.+. .||... |.
T Consensus 185 ~-~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLKl--dpdHK~Cf~ 261 (504)
T KOG0624|consen 185 Q-PWDASLRQARAKCYIAEGEPKKAIHDLKQASKLSQDNTEGHYKISQLLYTVGDAENSLKEIRECLKL--DPDHKLCFP 261 (504)
T ss_pred C-cchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhccccchHHHHHHHHHHHhhhhHHHHHHHHHHHHcc--CcchhhHHH
Confidence 3 4555666666666777777776665554433 455555555566666677777777666666543 555331 11
Q ss_pred ---HH---------HHHHhccCcHHHHHHHHHHhHHhcCCCCC--h---HHHHHHHHHHhhcCCHHHHHHHHhhCC-CCC
Q 007573 410 ---SL---------LSACGHAGKVNESMDLFELMVKVYGIIPS--S---EHYTCLVDILSRAGQLEKAWQITQGMP-FEA 471 (597)
Q Consensus 410 ---~l---------l~~~~~~g~~~~a~~~~~~~~~~~~~~p~--~---~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p 471 (597)
.+ +......+++.++.+..+...+. .|. . ..+..+-..+...|++-+|++...+.. +.|
T Consensus 262 ~YKklkKv~K~les~e~~ie~~~~t~cle~ge~vlk~---ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~~d~ 338 (504)
T KOG0624|consen 262 FYKKLKKVVKSLESAEQAIEEKHWTECLEAGEKVLKN---EPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLDIDP 338 (504)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhc---CCcccceeeeeeheeeecccccCCHHHHHHHHHHHHhcCc
Confidence 11 11122344555555555554432 222 1 122233344455566667766666554 444
Q ss_pred C-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCc
Q 007573 472 D-TGVWGSLLAACVINLNVELGELAAKKMRELDPQNSA 508 (597)
Q Consensus 472 ~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~ 508 (597)
| +.++.--..+|.....++.|+.-|+++.+.++++..
T Consensus 339 ~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e~n~sn~~ 376 (504)
T KOG0624|consen 339 DDVQVLCDRAEAYLGDEMYDDAIHDYEKALELNESNTR 376 (504)
T ss_pred hHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCcccHH
Confidence 4 556666666666666677777777777777766544
No 80
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=99.13 E-value=4e-09 Score=106.30 Aligned_cols=271 Identities=14% Similarity=0.125 Sum_probs=192.9
Q ss_pred HHHHHhHHCCCCCCHHHHHHHHHHHhccchhHHHHHHHHHHHHhCCCCcccHHHHHHHHHHhcCCHHHHHHHHhccCCCC
Q 007573 290 RLFSGMIKMDMQPDDATLVSVFTACSALQLLNEGRQSHVLVIRNGFEANVSVCNAVITMYSRCGGILDSELAFRQIHSPN 369 (597)
Q Consensus 290 ~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 369 (597)
.++-.+...|+.|+.+||..++..||..|+.+.|- ++..|.-...+.+..+++.++.+....++.+.+. .|.
T Consensus 11 nfla~~e~~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk-------ep~ 82 (1088)
T KOG4318|consen 11 NFLALHEISGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK-------EPL 82 (1088)
T ss_pred hHHHHHHHhcCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC-------CCc
Confidence 45677888999999999999999999999999999 9999998888999999999999999999887775 788
Q ss_pred hhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChHHHHHHHH
Q 007573 370 LVSWNTIIAAFAQHGHYEKALIFFSQMGLNGFDPDGITFLSLLSACGHAGKVNESMDLFELMVKVYGIIPSSEHYTCLVD 449 (597)
Q Consensus 370 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~ 449 (597)
..+|+.+..+|..+|+... .+..++ -...+...++..|....-..++..+.-..+.-||.. ..+.
T Consensus 83 aDtyt~Ll~ayr~hGDli~-fe~veq-----------dLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~---n~il 147 (1088)
T KOG4318|consen 83 ADTYTNLLKAYRIHGDLIL-FEVVEQ-----------DLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAE---NAIL 147 (1088)
T ss_pred hhHHHHHHHHHHhccchHH-HHHHHH-----------HHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHH---HHHH
Confidence 8999999999999999876 222222 122234455566665555666555432224445543 3556
Q ss_pred HHhhcCCHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCcHHHHH
Q 007573 450 ILSRAGQLEKAWQITQGMPFEADTGVWGSLLAACVINL-NVELGELAAKKMRELDPQNSAVYVMLSNLYAAAGMWRDVTR 528 (597)
Q Consensus 450 ~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g-~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 528 (597)
.+.-.|-++.+.+++..++...-......++.-+.... .+++-....+...+ .| ++.+|..+..+-...|+.+-|..
T Consensus 148 llv~eglwaqllkll~~~Pvsa~~~p~~vfLrqnv~~ntpvekLl~~cksl~e-~~-~s~~l~a~l~~alaag~~d~Ak~ 225 (1088)
T KOG4318|consen 148 LLVLEGLWAQLLKLLAKVPVSAWNAPFQVFLRQNVVDNTPVEKLLNMCKSLVE-AP-TSETLHAVLKRALAAGDVDGAKN 225 (1088)
T ss_pred HHHHHHHHHHHHHHHhhCCcccccchHHHHHHHhccCCchHHHHHHHHHHhhc-CC-ChHHHHHHHHHHHhcCchhhHHH
Confidence 66778889999999988871111111111355554433 34444444444444 34 47889999999999999999999
Q ss_pred HHHHHHhCCCccCCCeeEEEECCEEEEEEeCCCCCcchHHHHHHHHHHHHHHhhcCCccchhcccccC
Q 007573 529 VRLLMKEQGVTKQCAYSWIEIGNKVHYFLGGDMSHPCIDKIHLELKRASVQMKSVDDFVEIATSWSSF 596 (597)
Q Consensus 529 ~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 596 (597)
++..|+++|..-.+.+-|.. +.| -...+-+...++.|+.....+|..+....-.+|+
T Consensus 226 ll~emke~gfpir~HyFwpL--------l~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l 282 (1088)
T KOG4318|consen 226 LLYEMKEKGFPIRAHYFWPL--------LLG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQL 282 (1088)
T ss_pred HHHHHHHcCCCcccccchhh--------hhc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhh
Confidence 99999999998888877774 333 2233445566777777777777766555544444
No 81
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=99.13 E-value=5.8e-07 Score=89.17 Aligned_cols=424 Identities=15% Similarity=0.113 Sum_probs=244.1
Q ss_pred CChHHHHHHHhhcCCCCcchHHHHHHHHHhCCChhHHHHHHhhCCCCC-cchHHHHHHHHHcCCChHHHHHHHccCCCCC
Q 007573 64 GKISAARQLFDQMTTKDVITWNAIITGYWQNGFLQESKNLFQSMPVKN-IVSWNCMIAGCIDNDRIDDAFDYFQAMPERN 142 (597)
Q Consensus 64 g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~ 142 (597)
.++.+|..+|-+-.. -..-|..|....++++|+.+-+....|- ...-.+.++++...|+-+.|-++- +.+
T Consensus 545 kkfk~ae~ifleqn~-----te~aigmy~~lhkwde~i~lae~~~~p~~eklk~sy~q~l~dt~qd~ka~elk----~sd 615 (1636)
T KOG3616|consen 545 KKFKEAEMIFLEQNA-----TEEAIGMYQELHKWDEAIALAEAKGHPALEKLKRSYLQALMDTGQDEKAAELK----ESD 615 (1636)
T ss_pred hhhhHHHHHHHhccc-----HHHHHHHHHHHHhHHHHHHHHHhcCChHHHHHHHHHHHHHHhcCchhhhhhhc----ccc
Confidence 456777777643221 2334566777778888887776655441 122334555556666666555432 222
Q ss_pred hhhHHHHHHHHHcCCChHHHHHHHcc--CCCCCchhHHHHHHHHHhCCChhHHHHHHHhcccCCc---------------
Q 007573 143 TATYNAMISGFLKHGRLEEATRLFEQ--MPRRNVISYTAMLDGFMKKGEVDKARALSDYMSFKNV--------------- 205 (597)
Q Consensus 143 ~~~~~~l~~~~~~~g~~~~A~~~~~~--~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~--------------- 205 (597)
... .+.|+.|.+.|.+..|.+.... ....|......+..++.+..-+++|-++|+++..++.
T Consensus 616 gd~-laaiqlyika~~p~~a~~~a~n~~~l~~de~il~~ia~alik~elydkagdlfeki~d~dkale~fkkgdaf~kai 694 (1636)
T KOG3616|consen 616 GDG-LAAIQLYIKAGKPAKAARAALNDEELLADEEILEHIAAALIKGELYDKAGDLFEKIHDFDKALECFKKGDAFGKAI 694 (1636)
T ss_pred Ccc-HHHHHHHHHcCCchHHHHhhcCHHHhhccHHHHHHHHHHHHhhHHHHhhhhHHHHhhCHHHHHHHHHcccHHHHHH
Confidence 222 2356778888887777665422 1123444444455555555455555555554433321
Q ss_pred -----------chH-HHHHHHHHcCCChHHHHHHHhhcCCCCCCchHHHHHHHHHHhcCCHHHHHHHHhhcCCCChh--H
Q 007573 206 -----------VSW-TVMITGYVKNERFCEARELFYRMPDYDKNVFVVTAMITGFCKVGMLENARLLFERIQPKDCV--S 271 (597)
Q Consensus 206 -----------~~~-~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~--~ 271 (597)
++. .....-+...|+++.|..-|-++.. ..--+.+......+.+|+.+++.+...++. -
T Consensus 695 elarfafp~evv~lee~wg~hl~~~~q~daainhfiea~~-------~~kaieaai~akew~kai~ildniqdqk~~s~y 767 (1636)
T KOG3616|consen 695 ELARFAFPEEVVKLEEAWGDHLEQIGQLDAAINHFIEANC-------LIKAIEAAIGAKEWKKAISILDNIQDQKTASGY 767 (1636)
T ss_pred HHHHhhCcHHHhhHHHHHhHHHHHHHhHHHHHHHHHHhhh-------HHHHHHHHhhhhhhhhhHhHHHHhhhhcccccc
Confidence 111 1112222233444444433332211 112234455566777777777777665443 4
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHhHHCCCCCCHHHHHHHHHHHhccchhHHHHHHHHHHHHhCCCCcccHHHHHHHHHHh
Q 007573 272 FNAMIAGYAQNGVAEEALRLFSGMIKMDMQPDDATLVSVFTACSALQLLNEGRQSHVLVIRNGFEANVSVCNAVITMYSR 351 (597)
Q Consensus 272 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 351 (597)
|..+...|...|+++.|.++|.+.- .+.-.|..|.+.|+++.|.++-.+. .|....+..|-+-..-+-+
T Consensus 768 y~~iadhyan~~dfe~ae~lf~e~~---------~~~dai~my~k~~kw~da~kla~e~--~~~e~t~~~yiakaedlde 836 (1636)
T KOG3616|consen 768 YGEIADHYANKGDFEIAEELFTEAD---------LFKDAIDMYGKAGKWEDAFKLAEEC--HGPEATISLYIAKAEDLDE 836 (1636)
T ss_pred chHHHHHhccchhHHHHHHHHHhcc---------hhHHHHHHHhccccHHHHHHHHHHh--cCchhHHHHHHHhHHhHHh
Confidence 6667777888888888888775432 2344566777888888777664433 2334445556666666677
Q ss_pred cCCHHHHHHHHhccCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHhccCcHHHHHHHHHHh
Q 007573 352 CGGILDSELAFRQIHSPNLVSWNTIIAAFAQHGHYEKALIFFSQMGLNGFDPDGITFLSLLSACGHAGKVNESMDLFELM 431 (597)
Q Consensus 352 ~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~ 431 (597)
.|++.+|++++-.+..|+.. |..|-++|..+..+++..+-.. ..-..|...+..-+...|++..|...|-+.
T Consensus 837 hgkf~eaeqlyiti~~p~~a-----iqmydk~~~~ddmirlv~k~h~---d~l~dt~~~f~~e~e~~g~lkaae~~flea 908 (1636)
T KOG3616|consen 837 HGKFAEAEQLYITIGEPDKA-----IQMYDKHGLDDDMIRLVEKHHG---DHLHDTHKHFAKELEAEGDLKAAEEHFLEA 908 (1636)
T ss_pred hcchhhhhheeEEccCchHH-----HHHHHhhCcchHHHHHHHHhCh---hhhhHHHHHHHHHHHhccChhHHHHHHHhh
Confidence 88888888888777777643 6677888888888877765421 112456677777888889999988877654
Q ss_pred HHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHhhCCCCCCH-----HHHHH------HHHHHHhcC-------------
Q 007573 432 VKVYGIIPSSEHYTCLVDILSRAGQLEKAWQITQGMPFEADT-----GVWGS------LLAACVINL------------- 487 (597)
Q Consensus 432 ~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~-----~~~~~------l~~~~~~~g------------- 487 (597)
. -|.+-+++|...+-+++|.++-+.-. ..+. ..|.- -...+.++|
T Consensus 909 ~----------d~kaavnmyk~s~lw~dayriakteg-g~n~~k~v~flwaksiggdaavkllnk~gll~~~id~a~d~~ 977 (1636)
T KOG3616|consen 909 G----------DFKAAVNMYKASELWEDAYRIAKTEG-GANAEKHVAFLWAKSIGGDAAVKLLNKHGLLEAAIDFAADNC 977 (1636)
T ss_pred h----------hHHHHHHHhhhhhhHHHHHHHHhccc-cccHHHHHHHHHHHhhCcHHHHHHHHhhhhHHHHhhhhhccc
Confidence 3 25566778888888888887765432 0111 11111 111122333
Q ss_pred CHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCcHHHHHHHHHHHhC
Q 007573 488 NVELGELAAKKMRELDPQNSAVYVMLSNLYAAAGMWRDVTRVRLLMKEQ 536 (597)
Q Consensus 488 ~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 536 (597)
.++-|..+.+-..+ ..-+.+...++..+...|++++|.+-|-+..+.
T Consensus 978 afd~afdlari~~k--~k~~~vhlk~a~~ledegk~edaskhyveaikl 1024 (1636)
T KOG3616|consen 978 AFDFAFDLARIAAK--DKMGEVHLKLAMFLEDEGKFEDASKHYVEAIKL 1024 (1636)
T ss_pred chhhHHHHHHHhhh--ccCccchhHHhhhhhhccchhhhhHhhHHHhhc
Confidence 44444444333322 222667788888899999999998877766653
No 82
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=99.11 E-value=1.3e-07 Score=94.53 Aligned_cols=392 Identities=9% Similarity=0.053 Sum_probs=220.3
Q ss_pred CcchHHHHHHHHHcCCChHHHHHHHccCCCC---ChhhHHHHHHHHHcCCChHHHHHHHccCCC----C-CchhHHHHHH
Q 007573 111 NIVSWNCMIAGCIDNDRIDDAFDYFQAMPER---NTATYNAMISGFLKHGRLEEATRLFEQMPR----R-NVISYTAMLD 182 (597)
Q Consensus 111 ~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~-~~~~~~~li~ 182 (597)
|...|..|--+..+.|+++.+.+.|++..+- ....|..+...|...|.-..|..++++-.. | |+..+-...+
T Consensus 322 d~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~~Lmask 401 (799)
T KOG4162|consen 322 DAAIFDHLTFALSRCGQFEVLAEQFEQALPFSFGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISVLLMASK 401 (799)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchHHHHHHH
Confidence 4455555555666666666666666666532 345566666666666666666666665432 2 2222333333
Q ss_pred HHHh-CCChhHHHHHHHhccc--------CCcchHHHHHHHHHcC-----------CChHHHHHHHhhcCCCCC-CchHH
Q 007573 183 GFMK-KGEVDKARALSDYMSF--------KNVVSWTVMITGYVKN-----------ERFCEARELFYRMPDYDK-NVFVV 241 (597)
Q Consensus 183 ~~~~-~g~~~~A~~~~~~m~~--------~~~~~~~~ll~~~~~~-----------g~~~~a~~~~~~~~~~~~-~~~~~ 241 (597)
.|.+ .+..++++++..+... .....|..+.-+|... ....++.+.++++.+++| |..+.
T Consensus 402 lc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d~~dp~~i 481 (799)
T KOG4162|consen 402 LCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFDPTDPLVI 481 (799)
T ss_pred HHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcCCCCchHH
Confidence 3333 3455555555444421 1223343333333321 123456666666665444 22333
Q ss_pred HHHHHHHHhcCCHHHHHHHHhhcC----CCChhHHHHHHHHHHHcCChhHHHHHHHHhHHCCCCCCHH-HHHHHHHHHhc
Q 007573 242 TAMITGFCKVGMLENARLLFERIQ----PKDCVSFNAMIAGYAQNGVAEEALRLFSGMIKMDMQPDDA-TLVSVFTACSA 316 (597)
Q Consensus 242 ~~l~~~~~~~g~~~~A~~~~~~~~----~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-~~~~ll~~~~~ 316 (597)
.-+.--|+..++++.|.+...+.. ..+...|..+.-.+...+++.+|+.+.+..... .|+.. ....-+..-..
T Consensus 482 f~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E--~~~N~~l~~~~~~i~~~ 559 (799)
T KOG4162|consen 482 FYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEE--FGDNHVLMDGKIHIELT 559 (799)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHH--hhhhhhhchhhhhhhhh
Confidence 334444566667777766665533 345667777777777777777777777665442 11100 00000000000
Q ss_pred cchhHHHHHH-------HH----------HHH----HhCC-------CCcccHHHHHHHHHHhcCC---HHHHHHHHhcc
Q 007573 317 LQLLNEGRQS-------HV----------LVI----RNGF-------EANVSVCNAVITMYSRCGG---ILDSELAFRQI 365 (597)
Q Consensus 317 ~~~~~~a~~~-------~~----------~~~----~~~~-------~~~~~~~~~l~~~~~~~g~---~~~A~~~~~~~ 365 (597)
.++.+++... ++ +.. +.|. ...+.++..+.......+. .+.....+...
T Consensus 560 ~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~~~~~~~se~~Lp~s~~~ 639 (799)
T KOG4162|consen 560 FNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVASQLKSAGSELKLPSSTVL 639 (799)
T ss_pred cccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHHhhhhhcccccccCccccc
Confidence 1111111111 11 110 1111 1112233333322221111 11111111111
Q ss_pred CCCC------hhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCC
Q 007573 366 HSPN------LVSWNTIIAAFAQHGHYEKALIFFSQMGLNGFDPDGITFLSLLSACGHAGKVNESMDLFELMVKVYGIIP 439 (597)
Q Consensus 366 ~~~~------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p 439 (597)
..|+ ...|......+.+.++.++|...+.+.... .+.....|......+...|..++|.+.|.... -+.|
T Consensus 640 ~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~-~~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al---~ldP 715 (799)
T KOG4162|consen 640 PGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKI-DPLSASVYYLRGLLLEVKGQLEEAKEAFLVAL---ALDP 715 (799)
T ss_pred CCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhc-chhhHHHHHHhhHHHHHHHhhHHHHHHHHHHH---hcCC
Confidence 1222 224666677788899999999888887653 23345566666677788899999999998876 5667
Q ss_pred C-hHHHHHHHHHHhhcCCHHHHHH--HHhhCC-CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCc
Q 007573 440 S-SEHYTCLVDILSRAGQLEKAWQ--ITQGMP-FEA-DTGVWGSLLAACVINLNVELGELAAKKMRELDPQNSA 508 (597)
Q Consensus 440 ~-~~~~~~l~~~~~~~g~~~~A~~--~~~~~~-~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~ 508 (597)
+ +....++..++.+.|+..-|.+ ++..+. ..| +...|..++....+.|+.++|.+.|.-+.++++.+|.
T Consensus 716 ~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qLe~S~PV 789 (799)
T KOG4162|consen 716 DHVPSMTALAELLLELGSPRLAEKRSLLSDALRLDPLNHEAWYYLGEVFKKLGDSKQAAECFQAALQLEESNPV 789 (799)
T ss_pred CCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccchHHHHHHHHHHHhhccCCCc
Confidence 6 7788999999999998777776 777665 556 5789999999999999999999999999999887653
No 83
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=99.09 E-value=1.8e-07 Score=95.87 Aligned_cols=130 Identities=11% Similarity=0.063 Sum_probs=73.6
Q ss_pred hHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChHHHH----HHHHHHhhcCCHHHHHHHHhhCCCCCCHHHHHHHH
Q 007573 405 GITFLSLLSACGHAGKVNESMDLFELMVKVYGIIPSSEHYT----CLVDILSRAGQLEKAWQITQGMPFEADTGVWGSLL 480 (597)
Q Consensus 405 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~----~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~ 480 (597)
...|........+.+..+.|.+...+.+.-...+.+...|+ .+...+...|.++.|..-+.......+..+...-+
T Consensus 967 ~fAy~~~gstlEhL~ey~~a~ela~RliglLe~k~d~sqynvak~~~gRL~lslgefe~A~~a~~~~~~evdEdi~gt~l 1046 (1238)
T KOG1127|consen 967 CFAYAANGSTLEHLEEYRAALELATRLIGLLELKLDESQYNVAKPDAGRLELSLGEFESAKKASWKEWMEVDEDIRGTDL 1046 (1238)
T ss_pred hHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhhhcchhhHhhhhcccchhHHHHHhhhhH
Confidence 44555555555566666666555554432211223333344 23445556677776666665544333333332222
Q ss_pred HHHHhcCCHHHHHHHHHHHHhcCCCC---CchHHHHHHHHHhcCCcHHHHHHHHHHHh
Q 007573 481 AACVINLNVELGELAAKKMRELDPQN---SAVYVMLSNLYAAAGMWRDVTRVRLLMKE 535 (597)
Q Consensus 481 ~~~~~~g~~~~a~~~~~~~~~~~p~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 535 (597)
.. .-.|+++++.+.|++++.+.-.+ ......++.....++.-+.|...+-+...
T Consensus 1047 ~l-Ffkndf~~sl~~fe~aLsis~se~d~vvLl~kva~~~g~~~~k~~A~~lLfe~~~ 1103 (1238)
T KOG1127|consen 1047 TL-FFKNDFFSSLEFFEQALSISNSESDKVVLLCKVAVCMGLARQKNDAQFLLFEVKS 1103 (1238)
T ss_pred HH-HHHhHHHHHHHHHHHHhhhcccccchhhhhHHHHHHHhhcccchHHHHHHHHHHH
Confidence 22 33578899999999998875443 34455667777777888888776555543
No 84
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=99.08 E-value=1.4e-06 Score=85.58 Aligned_cols=409 Identities=13% Similarity=0.110 Sum_probs=241.3
Q ss_pred chHHHHHHHHHhcCChHHHHHHHhhcCCC---CcchHHHHHHHHHhCCChhHHHHHHhhCCCC---CcchHHHHHHHHHc
Q 007573 51 FVNNAKISALSRAGKISAARQLFDQMTTK---DVITWNAIITGYWQNGFLQESKNLFQSMPVK---NIVSWNCMIAGCID 124 (597)
Q Consensus 51 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~ll~~~~~ 124 (597)
..|-.++..| ..+++...++..+.+.+. ...|.....-.+...|+-++|....+..... +.+.|..+.-.+-.
T Consensus 9 ~lF~~~lk~y-E~kQYkkgLK~~~~iL~k~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~~S~vCwHv~gl~~R~ 87 (700)
T KOG1156|consen 9 ALFRRALKCY-ETKQYKKGLKLIKQILKKFPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDLKSHVCWHVLGLLQRS 87 (700)
T ss_pred HHHHHHHHHH-HHHHHHhHHHHHHHHHHhCCccchhHHhccchhhcccchHHHHHHHHHHhccCcccchhHHHHHHHHhh
Confidence 3456677766 455666666666665542 2223443344456679999999998888764 67889999888888
Q ss_pred CCChHHHHHHHccCC---CCChhhHHHHHHHHHcCCChHHHHHHHccCCC---CCchhHHHHHHHHHhCCChhHHHHHHH
Q 007573 125 NDRIDDAFDYFQAMP---ERNTATYNAMISGFLKHGRLEEATRLFEQMPR---RNVISYTAMLDGFMKKGEVDKARALSD 198 (597)
Q Consensus 125 ~~~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~ 198 (597)
..++++|++.+.... +.|...+.-|.-.-...|+++.....-....+ .....|..++.++.-.|+...|..+++
T Consensus 88 dK~Y~eaiKcy~nAl~~~~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~~~~ra~w~~~Avs~~L~g~y~~A~~il~ 167 (700)
T KOG1156|consen 88 DKKYDEAIKCYRNALKIEKDNLQILRDLSLLQIQMRDYEGYLETRNQLLQLRPSQRASWIGFAVAQHLLGEYKMALEILE 167 (700)
T ss_pred hhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 889999999999887 45667777666666677777777766555543 345578999999999999999999988
Q ss_pred hcc-----cCCcchHHHH------HHHHHcCCChHHHHHHHhhcCCCCCCc-hHHHHHHHHHHhcCCHHHHHHHHhhcCC
Q 007573 199 YMS-----FKNVVSWTVM------ITGYVKNERFCEARELFYRMPDYDKNV-FVVTAMITGFCKVGMLENARLLFERIQP 266 (597)
Q Consensus 199 ~m~-----~~~~~~~~~l------l~~~~~~g~~~~a~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 266 (597)
... .|+...+... .....+.|.+++|.+.+..-....-|- ..-..-...+.+.+++++|..++..+..
T Consensus 168 ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~ 247 (700)
T KOG1156|consen 168 EFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQIVDKLAFEETKADLLMKLGQLEEAVKVYRRLLE 247 (700)
T ss_pred HHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhHHHHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHh
Confidence 772 2454444322 234567888888888887665422222 2334557788999999999999999876
Q ss_pred C--ChhHHH-HHHHHHHHcCChhHHH-HHHHHhHHCCCCCCHHHHHHHHHHHhccchhHHHHHHHHHHHHhCCCCcccHH
Q 007573 267 K--DCVSFN-AMIAGYAQNGVAEEAL-RLFSGMIKMDMQPDDATLVSVFTACSALQLLNEGRQSHVLVIRNGFEANVSVC 342 (597)
Q Consensus 267 ~--~~~~~~-~li~~~~~~g~~~~A~-~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 342 (597)
+ |...|+ .+..++.+-.+.-+++ .+|....+. .+-.......-++......-.+....++...++.|+++ ++
T Consensus 248 rnPdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~-y~r~e~p~Rlplsvl~~eel~~~vdkyL~~~l~Kg~p~---vf 323 (700)
T KOG1156|consen 248 RNPDNLDYYEGLEKALGKIKDMLEALKALYAILSEK-YPRHECPRRLPLSVLNGEELKEIVDKYLRPLLSKGVPS---VF 323 (700)
T ss_pred hCchhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhc-CcccccchhccHHHhCcchhHHHHHHHHHHHhhcCCCc---hh
Confidence 4 334444 4445554333444444 666655442 11111111222233333444556666777777888654 44
Q ss_pred HHHHHHHHhcCCHHHHHHH----HhccC--------------CCChhhHH--HHHHHHHHcCCHHHHHHHHHHHHHCCCC
Q 007573 343 NAVITMYSRCGGILDSELA----FRQIH--------------SPNLVSWN--TIIAAFAQHGHYEKALIFFSQMGLNGFD 402 (597)
Q Consensus 343 ~~l~~~~~~~g~~~~A~~~----~~~~~--------------~~~~~~~~--~li~~~~~~g~~~~A~~~~~~m~~~g~~ 402 (597)
..+...|-.-...+-.+++ ...+. +|....|. .++..+-..|+++.|..+++..... .
T Consensus 324 ~dl~SLyk~p~k~~~le~Lvt~y~~~L~~~~~f~~~D~~~~E~PttllWt~y~laqh~D~~g~~~~A~~yId~AIdH--T 401 (700)
T KOG1156|consen 324 KDLRSLYKDPEKVAFLEKLVTSYQHSLSGTGMFNFLDDGKQEPPTTLLWTLYFLAQHYDKLGDYEVALEYIDLAIDH--T 401 (700)
T ss_pred hhhHHHHhchhHhHHHHHHHHHHHhhcccccCCCcccccccCCchHHHHHHHHHHHHHHHcccHHHHHHHHHHHhcc--C
Confidence 5555555332221111111 11111 12222222 3444555566666666666665543 4
Q ss_pred CChH-HHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHhhCC
Q 007573 403 PDGI-TFLSLLSACGHAGKVNESMDLFELMVKVYGIIPSSEHYTCLVDILSRAGQLEKAWQITQGMP 468 (597)
Q Consensus 403 p~~~-~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 468 (597)
|+.+ -|..-.+.+.+.|++++|..++++..+- -.||...-..-+.-..++++.++|.++.....
T Consensus 402 PTliEly~~KaRI~kH~G~l~eAa~~l~ea~el--D~aDR~INsKcAKYmLrAn~i~eA~~~~skFT 466 (700)
T KOG1156|consen 402 PTLIELYLVKARIFKHAGLLDEAAAWLDEAQEL--DTADRAINSKCAKYMLRANEIEEAEEVLSKFT 466 (700)
T ss_pred chHHHHHHHHHHHHHhcCChHHHHHHHHHHHhc--cchhHHHHHHHHHHHHHccccHHHHHHHHHhh
Confidence 4422 3333345555666666666666655431 12333333344445556666666666554443
No 85
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.08 E-value=2.7e-07 Score=88.67 Aligned_cols=95 Identities=12% Similarity=0.100 Sum_probs=59.9
Q ss_pred HHHhcCChHHHHHHHhhcCC---CCcchHHHHHHHHHhCCChhHHHHHHhhCCCCC---cchHHHHHHHHHcCCChHHHH
Q 007573 59 ALSRAGKISAARQLFDQMTT---KDVITWNAIITGYWQNGFLQESKNLFQSMPVKN---IVSWNCMIAGCIDNDRIDDAF 132 (597)
Q Consensus 59 ~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~ll~~~~~~~~~~~A~ 132 (597)
+.+..|+++.|...|-.... +|.+.|+.-..+|+..|++++|++--.+-.+.+ +..|+....++.-.|++++|+
T Consensus 11 aa~s~~d~~~ai~~~t~ai~l~p~nhvlySnrsaa~a~~~~~~~al~da~k~~~l~p~w~kgy~r~Gaa~~~lg~~~eA~ 90 (539)
T KOG0548|consen 11 AAFSSGDFETAIRLFTEAIMLSPTNHVLYSNRSAAYASLGSYEKALKDATKTRRLNPDWAKGYSRKGAALFGLGDYEEAI 90 (539)
T ss_pred hhcccccHHHHHHHHHHHHccCCCccchhcchHHHHHHHhhHHHHHHHHHHHHhcCCchhhHHHHhHHHHHhcccHHHHH
Confidence 34556777777777776544 455566666777777777777766555544332 335666666777777777777
Q ss_pred HHHccCC---CCChhhHHHHHHHH
Q 007573 133 DYFQAMP---ERNTATYNAMISGF 153 (597)
Q Consensus 133 ~~~~~~~---~~~~~~~~~l~~~~ 153 (597)
..|..-+ +.|...++-|..++
T Consensus 91 ~ay~~GL~~d~~n~~L~~gl~~a~ 114 (539)
T KOG0548|consen 91 LAYSEGLEKDPSNKQLKTGLAQAY 114 (539)
T ss_pred HHHHHHhhcCCchHHHHHhHHHhh
Confidence 7776655 33445556666655
No 86
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.07 E-value=7.2e-09 Score=100.07 Aligned_cols=250 Identities=13% Similarity=0.078 Sum_probs=180.2
Q ss_pred ccchhHHHHHHHHHHHHhCCCCcccHHHHHHHHHHhcCCHHHHHHHHhccC---CCChhhHHHHHHHHHHcCCHHHHHHH
Q 007573 316 ALQLLNEGRQSHVLVIRNGFEANVSVCNAVITMYSRCGGILDSELAFRQIH---SPNLVSWNTIIAAFAQHGHYEKALIF 392 (597)
Q Consensus 316 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~ 392 (597)
+.|++..|.-.|+..++.+ |-+...|..|.......++-..|+..+++.. +.|....-.|.-.|...|.-.+|++.
T Consensus 297 ~nG~L~~A~LafEAAVkqd-P~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~NleaLmaLAVSytNeg~q~~Al~~ 375 (579)
T KOG1125|consen 297 KNGDLSEAALAFEAAVKQD-PQHAEAWQKLGITQAENENEQNAISALRRCLELDPTNLEALMALAVSYTNEGLQNQALKM 375 (579)
T ss_pred hcCCchHHHHHHHHHHhhC-hHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhHHHHHHH
Confidence 4455555555555555554 4456666666667777777777777777665 45667777788888989999999999
Q ss_pred HHHHHHCCCC--------CChHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHH
Q 007573 393 FSQMGLNGFD--------PDGITFLSLLSACGHAGKVNESMDLFELMVKVYGIIPSSEHYTCLVDILSRAGQLEKAWQIT 464 (597)
Q Consensus 393 ~~~m~~~g~~--------p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~ 464 (597)
|+.-+....+ ++...-.. ..+.....+....++|-++....+..+|+.++..|.-.|--.|.+++|.+.|
T Consensus 376 L~~Wi~~~p~y~~l~~a~~~~~~~~~--~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdraiDcf 453 (579)
T KOG1125|consen 376 LDKWIRNKPKYVHLVSAGENEDFENT--KSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAVDCF 453 (579)
T ss_pred HHHHHHhCccchhccccCccccccCC--cCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHHHHH
Confidence 9887654210 00000000 1222333445566667666666576789999999999999999999999999
Q ss_pred hhCC-CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCcHHHHHHHHHHHhCCCccCC
Q 007573 465 QGMP-FEA-DTGVWGSLLAACVINLNVELGELAAKKMRELDPQNSAVYVMLSNLYAAAGMWRDVTRVRLLMKEQGVTKQC 542 (597)
Q Consensus 465 ~~~~-~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 542 (597)
+... .+| |...||.|+..++...+.++|+..|.+++++.|.-..+...|+-.|...|.++||.+.|-..+...-+..
T Consensus 454 ~~AL~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~mq~ks~- 532 (579)
T KOG1125|consen 454 EAALQVKPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPGYVRVRYNLGISCMNLGAYKEAVKHLLEALSMQRKSR- 532 (579)
T ss_pred HHHHhcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCeeeeehhhhhhhhhhhhHHHHHHHHHHHHHhhhccc-
Confidence 9876 666 5679999999999999999999999999999999999999999999999999999999888765332100
Q ss_pred CeeEEEECCEEEEEEeCCCCCcchHHHHHHHHHHHHHHhhcC
Q 007573 543 AYSWIEIGNKVHYFLGGDMSHPCIDKIHLELKRASVQMKSVD 584 (597)
Q Consensus 543 ~~s~~~~~~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~ 584 (597)
. ..+..++ ...|+..|+.....+++++
T Consensus 533 ----~----------~~~~~~~-se~iw~tLR~als~~~~~D 559 (579)
T KOG1125|consen 533 ----N----------HNKAPMA-SENIWQTLRLALSAMNRSD 559 (579)
T ss_pred ----c----------cccCCcc-hHHHHHHHHHHHHHcCCch
Confidence 0 0011122 6789999997777776665
No 87
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.06 E-value=3e-08 Score=98.34 Aligned_cols=232 Identities=17% Similarity=0.189 Sum_probs=156.4
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHhhcCCC----------Chh-HHHHHHHHHHHcCChhHHHHHHHHhHHC---CCCCCH
Q 007573 239 FVVTAMITGFCKVGMLENARLLFERIQPK----------DCV-SFNAMIAGYAQNGVAEEALRLFSGMIKM---DMQPDD 304 (597)
Q Consensus 239 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----------~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~---g~~p~~ 304 (597)
.+...+..+|...|+++.|+.+++..... .+. ..+.+...|...+++++|..+|+++... ..-++.
T Consensus 200 ~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h 279 (508)
T KOG1840|consen 200 RTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGEDH 279 (508)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCC
Confidence 34555777888888888888877664331 111 3334556677777777777777776541 011111
Q ss_pred HHHHHHHHHHhccchhHHHHHHHHHHHHhCCCCcccHHHHHHHHHHhcCCHHHHHHHHhccC----------CCChh-hH
Q 007573 305 ATLVSVFTACSALQLLNEGRQSHVLVIRNGFEANVSVCNAVITMYSRCGGILDSELAFRQIH----------SPNLV-SW 373 (597)
Q Consensus 305 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~----------~~~~~-~~ 373 (597)
. .-..+++.|..+|.+.|++++|...++... .+.+. .+
T Consensus 280 ~-------------------------------~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l 328 (508)
T KOG1840|consen 280 P-------------------------------AVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQL 328 (508)
T ss_pred H-------------------------------HHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHH
Confidence 1 112344555556666666666655554432 12222 45
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHC---CCCCC----hHHHHHHHHHHhccCcHHHHHHHHHHhHHhc----C-CCCC-
Q 007573 374 NTIIAAFAQHGHYEKALIFFSQMGLN---GFDPD----GITFLSLLSACGHAGKVNESMDLFELMVKVY----G-IIPS- 440 (597)
Q Consensus 374 ~~li~~~~~~g~~~~A~~~~~~m~~~---g~~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~----~-~~p~- 440 (597)
+.++..+...+++++|..++++..+. -+.++ ..++..+...+...|++++|.++++.+++.. + ..+.
T Consensus 329 ~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~ 408 (508)
T KOG1840|consen 329 SELAAILQSMNEYEEAKKLLQKALKIYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGV 408 (508)
T ss_pred HHHHHHHHHhcchhHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhh
Confidence 56677788889999999988876542 12333 3578899999999999999999999887652 1 1222
Q ss_pred hHHHHHHHHHHhhcCCHHHHHHHHhhCC--------CCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 007573 441 SEHYTCLVDILSRAGQLEKAWQITQGMP--------FEADT-GVWGSLLAACVINLNVELGELAAKKMRE 501 (597)
Q Consensus 441 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~--------~~p~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 501 (597)
...++.|...|.+.++..+|.++|.+.. ..|+. .+|..|...|...|+++.|+++.+.+..
T Consensus 409 ~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~~ 478 (508)
T KOG1840|consen 409 GKPLNQLAEAYEELKKYEEAEQLFEEAKDIMKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVLN 478 (508)
T ss_pred hHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence 4567888999999999999999987653 33443 4899999999999999999999998874
No 88
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=99.03 E-value=7.2e-08 Score=96.87 Aligned_cols=297 Identities=14% Similarity=0.105 Sum_probs=186.3
Q ss_pred HHHHHhcCCHHHHHHHHhhcCCC--Ch-hHHHHHHHHHHHcCChhHHHHHHHHhHHCCCCCCHHHHHHHHHHHhc-c---
Q 007573 245 ITGFCKVGMLENARLLFERIQPK--DC-VSFNAMIAGYAQNGVAEEALRLFSGMIKMDMQPDDATLVSVFTACSA-L--- 317 (597)
Q Consensus 245 ~~~~~~~g~~~~A~~~~~~~~~~--~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~-~--- 317 (597)
...+...|++++|++.++..... |. .........+.+.|+.++|..+|..+++. .|+...|...+..+.. .
T Consensus 11 ~~il~e~g~~~~AL~~L~~~~~~I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~r--NPdn~~Yy~~L~~~~g~~~~~ 88 (517)
T PF12569_consen 11 NSILEEAGDYEEALEHLEKNEKQILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDR--NPDNYDYYRGLEEALGLQLQL 88 (517)
T ss_pred HHHHHHCCCHHHHHHHHHhhhhhCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CCCcHHHHHHHHHHHhhhccc
Confidence 45567788888888888775542 33 35556677788888888888888888876 4666666555444431 1
Q ss_pred --chhHHHHHHHHHHHHhCCCCcccHHHHHHHHHHhcCCHHHHHHHHhccCCCChhhHHHHHHHHHHcCCH-HHHHHHHH
Q 007573 318 --QLLNEGRQSHVLVIRNGFEANVSVCNAVITMYSRCGGILDSELAFRQIHSPNLVSWNTIIAAFAQHGHY-EKALIFFS 394 (597)
Q Consensus 318 --~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~-~~A~~~~~ 394 (597)
.+.+....+++.+...- |...+...+.-.+.....+ ..+..++.
T Consensus 89 ~~~~~~~~~~~y~~l~~~y---------------------------------p~s~~~~rl~L~~~~g~~F~~~~~~yl~ 135 (517)
T PF12569_consen 89 SDEDVEKLLELYDELAEKY---------------------------------PRSDAPRRLPLDFLEGDEFKERLDEYLR 135 (517)
T ss_pred ccccHHHHHHHHHHHHHhC---------------------------------ccccchhHhhcccCCHHHHHHHHHHHHH
Confidence 12333333333332221 1111111111111111122 34555667
Q ss_pred HHHHCCCCCChHHHHHHHHHHhccCcHHHHHHHHHHhHHhc-------------CCCCCh--HHHHHHHHHHhhcCCHHH
Q 007573 395 QMGLNGFDPDGITFLSLLSACGHAGKVNESMDLFELMVKVY-------------GIIPSS--EHYTCLVDILSRAGQLEK 459 (597)
Q Consensus 395 ~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~-------------~~~p~~--~~~~~l~~~~~~~g~~~~ 459 (597)
.+...|+++ +|..+-..|......+-..+++....... .-+|+. .++.-+...|...|++++
T Consensus 136 ~~l~KgvPs---lF~~lk~Ly~d~~K~~~i~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~ 212 (517)
T PF12569_consen 136 PQLRKGVPS---LFSNLKPLYKDPEKAAIIESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEK 212 (517)
T ss_pred HHHhcCCch---HHHHHHHHHcChhHHHHHHHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHH
Confidence 777777654 45555555555555555555555544321 112443 344566888899999999
Q ss_pred HHHHHhhCC-CCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCcHHHHHHHHHHHhCC
Q 007573 460 AWQITQGMP-FEAD-TGVWGSLLAACVINLNVELGELAAKKMRELDPQNSAVYVMLSNLYAAAGMWRDVTRVRLLMKEQG 537 (597)
Q Consensus 460 A~~~~~~~~-~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 537 (597)
|++++++.. ..|. +..|..-...+.+.|++++|.+.++.+.++++.|.-+-...+..+.+.|++++|.++.....+.+
T Consensus 213 Al~~Id~aI~htPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~ 292 (517)
T PF12569_consen 213 ALEYIDKAIEHTPTLVELYMTKARILKHAGDLKEAAEAMDEARELDLADRYINSKCAKYLLRAGRIEEAEKTASLFTRED 292 (517)
T ss_pred HHHHHHHHHhcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCChhhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCC
Confidence 999999765 6676 56888888999999999999999999999999999988999999999999999999999887766
Q ss_pred CccCC-----CeeEEEECCEEEEEEeCCCCCcchHHHHHHHHHHHHHHhhcCCccchhcccc
Q 007573 538 VTKQC-----AYSWIEIGNKVHYFLGGDMSHPCIDKIHLELKRASVQMKSVDDFVEIATSWS 594 (597)
Q Consensus 538 ~~~~~-----~~s~~~~~~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 594 (597)
..+.. -+.|. .-+..+.+.........+++...+.++|.+|.
T Consensus 293 ~~~~~~L~~mQc~Wf---------------~~e~a~a~~r~~~~~~ALk~~~~v~k~f~~~~ 339 (517)
T PF12569_consen 293 VDPLSNLNDMQCMWF---------------ETECAEAYLRQGDYGLALKRFHAVLKHFDDFE 339 (517)
T ss_pred CCcccCHHHHHHHHH---------------HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHh
Confidence 42111 11232 11233344444555555566666666666554
No 89
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.01 E-value=3.3e-06 Score=82.27 Aligned_cols=405 Identities=10% Similarity=0.065 Sum_probs=208.6
Q ss_pred HcCCChHHHHHHHccCC---CCChhhHHHHHHHHHcCCChHHHHHHHccCCCCCchhHHHHHHHH--HhCCChhHHHHHH
Q 007573 123 IDNDRIDDAFDYFQAMP---ERNTATYNAMISGFLKHGRLEEATRLFEQMPRRNVISYTAMLDGF--MKKGEVDKARALS 197 (597)
Q Consensus 123 ~~~~~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~--~~~g~~~~A~~~~ 197 (597)
...+++++|.+....+. +.+...+..-+-+....+++++|+.+.+.-...+....-.+=.+| .+.+..++|+..+
T Consensus 23 ~~~~e~e~a~k~~~Kil~~~pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~~~~~~~~fEKAYc~Yrlnk~Dealk~~ 102 (652)
T KOG2376|consen 23 GKNGEYEEAVKTANKILSIVPDDEDAIRCKVVALIQLDKYEDALKLIKKNGALLVINSFFFEKAYCEYRLNKLDEALKTL 102 (652)
T ss_pred ccchHHHHHHHHHHHHHhcCCCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchhhhcchhhHHHHHHHHHcccHHHHHHHH
Confidence 34445555555554444 334445555555555566666666554433211111000012222 3456666666666
Q ss_pred HhcccCCcchHHHHHHHHHcCCChHHHHHHHhhcCCCCCCchHHHHHHHHHHhcCCHHHHHHHHhhcCCC---ChhHHHH
Q 007573 198 DYMSFKNVVSWTVMITGYVKNERFCEARELFYRMPDYDKNVFVVTAMITGFCKVGMLENARLLFERIQPK---DCVSFNA 274 (597)
Q Consensus 198 ~~m~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~ 274 (597)
+-....|..+...-...+.+.|++++|..+|+.+.+...+..--..-.++... +..-.+. +.+..+.. +-..+..
T Consensus 103 ~~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~-~a~l~~~-~~q~v~~v~e~syel~yN 180 (652)
T KOG2376|consen 103 KGLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAV-AAALQVQ-LLQSVPEVPEDSYELLYN 180 (652)
T ss_pred hcccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHH-HHhhhHH-HHHhccCCCcchHHHHHH
Confidence 64444454455555666667777777777777765522111111111111111 1111111 23333322 2223333
Q ss_pred HHHHHHHcCChhHHHHHHHHhHHCC-------CCC------CHH-HHHHHHHHHhccchhHHHHHHHHHHHHhCCCCcc-
Q 007573 275 MIAGYAQNGVAEEALRLFSGMIKMD-------MQP------DDA-TLVSVFTACSALQLLNEGRQSHVLVIRNGFEANV- 339 (597)
Q Consensus 275 li~~~~~~g~~~~A~~~~~~m~~~g-------~~p------~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~- 339 (597)
....+...|++.+|+++++...+.+ -.- +.. .-..+.-++-..|+.+++..++...++......+
T Consensus 181 ~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea~~iy~~~i~~~~~D~~~ 260 (652)
T KOG2376|consen 181 TACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAEASSIYVDIIKRNPADEPS 260 (652)
T ss_pred HHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhcCCCchH
Confidence 4556677888888888887773211 011 111 1123334456789999999999999988743221
Q ss_pred --cHHHHHHHHHHhcCCHH-HHHHHHhccCCCCh--------------hhH-HHHHHHHHHcCCHHHHHHHHHHHHHCCC
Q 007573 340 --SVCNAVITMYSRCGGIL-DSELAFRQIHSPNL--------------VSW-NTIIAAFAQHGHYEKALIFFSQMGLNGF 401 (597)
Q Consensus 340 --~~~~~l~~~~~~~g~~~-~A~~~~~~~~~~~~--------------~~~-~~li~~~~~~g~~~~A~~~~~~m~~~g~ 401 (597)
...|.|+.+-....-++ .+...++....... +.. +.++..| .+..+.+.++..... +.
T Consensus 261 ~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~~N~~lL~l~--tnk~~q~r~~~a~lp--~~ 336 (652)
T KOG2376|consen 261 LAVAVNNLVALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIYRNNALLALF--TNKMDQVRELSASLP--GM 336 (652)
T ss_pred HHHHhcchhhhccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH--hhhHHHHHHHHHhCC--cc
Confidence 22333333222211111 22223332221111 111 1222222 234455555443332 22
Q ss_pred CCChHHHHHHHHHHhc--cCcHHHHHHHHHHhHHhcCCCCC-hHHHHHHHHHHhhcCCHHHHHHHHh--------hCC-C
Q 007573 402 DPDGITFLSLLSACGH--AGKVNESMDLFELMVKVYGIIPS-SEHYTCLVDILSRAGQLEKAWQITQ--------GMP-F 469 (597)
Q Consensus 402 ~p~~~~~~~ll~~~~~--~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~--------~~~-~ 469 (597)
.|. ..+.+++..+.+ ...+..+.+++....+. .+-. ..+.-.++......|+++.|.+++. .++ .
T Consensus 337 ~p~-~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~--~p~~s~~v~L~~aQl~is~gn~~~A~~il~~~~~~~~ss~~~~ 413 (652)
T KOG2376|consen 337 SPE-SLFPILLQEATKVREKKHKKAIELLLQFADG--HPEKSKVVLLLRAQLKISQGNPEVALEILSLFLESWKSSILEA 413 (652)
T ss_pred Cch-HHHHHHHHHHHHHHHHHHhhhHHHHHHHhcc--CCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhhhhhhh
Confidence 333 334445544432 23577777877776553 2222 4556667788899999999999998 444 3
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc----CCC---CCchHHHHHHHHHhcCCcHHHHHHHHHHHhC
Q 007573 470 EADTGVWGSLLAACVINLNVELGELAAKKMREL----DPQ---NSAVYVMLSNLYAAAGMWRDVTRVRLLMKEQ 536 (597)
Q Consensus 470 ~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~p~---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 536 (597)
.-.+.+...+...+.+.++.+.|..++.+++.- .+. ....+..++..-.+.|+-++|...++++.+.
T Consensus 414 ~~~P~~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G~~~ea~s~leel~k~ 487 (652)
T KOG2376|consen 414 KHLPGTVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHGNEEEASSLLEELVKF 487 (652)
T ss_pred ccChhHHHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcCchHHHHHHHHHHHHh
Confidence 334556666667777777777788888777752 222 2344555666677789999999999999873
No 90
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=98.99 E-value=2.1e-07 Score=79.77 Aligned_cols=188 Identities=12% Similarity=0.035 Sum_probs=108.6
Q ss_pred ccchhHHHHHHHHHHHHhCCCCcccHHHHHHHHHHhcCCHHHHHHHHhccC---CCChhhHHHHHHHHHHcCCHHHHHHH
Q 007573 316 ALQLLNEGRQSHVLVIRNGFEANVSVCNAVITMYSRCGGILDSELAFRQIH---SPNLVSWNTIIAAFAQHGHYEKALIF 392 (597)
Q Consensus 316 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~ 392 (597)
..|+...|+.-++++++.. +.+..++..+...|.+.|..+.|.+.|++.. +.+..+.|.....+|..|++++|...
T Consensus 47 ~~gd~~~A~~nlekAL~~D-Ps~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~~GdVLNNYG~FLC~qg~~~eA~q~ 125 (250)
T COG3063 47 QQGDYAQAKKNLEKALEHD-PSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPNNGDVLNNYGAFLCAQGRPEEAMQQ 125 (250)
T ss_pred HCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCccchhhhhhHHHHhCCChHHHHHH
Confidence 3333333333333333332 3334445555556666666666666665543 44455666666666667777777777
Q ss_pred HHHHHHCCCCCC-hHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCC-hHHHHHHHHHHhhcCCHHHHHHHHhhCC--
Q 007573 393 FSQMGLNGFDPD-GITFLSLLSACGHAGKVNESMDLFELMVKVYGIIPS-SEHYTCLVDILSRAGQLEKAWQITQGMP-- 468 (597)
Q Consensus 393 ~~~m~~~g~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~-- 468 (597)
|++......-|. ..||..+.-+..+.|+.+.|...|++..+. .|+ +.....+.......|++..|..+++...
T Consensus 126 F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~---dp~~~~~~l~~a~~~~~~~~y~~Ar~~~~~~~~~ 202 (250)
T COG3063 126 FERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALEL---DPQFPPALLELARLHYKAGDYAPARLYLERYQQR 202 (250)
T ss_pred HHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHh---CcCCChHHHHHHHHHHhcccchHHHHHHHHHHhc
Confidence 776665432222 346666666666677777777777666542 233 4555666666667777777766666543
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCC
Q 007573 469 FEADTGVWGSLLAACVINLNVELGELAAKKMRELDPQNS 507 (597)
Q Consensus 469 ~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~ 507 (597)
..++..++-..|..-...||.+.+.+.=.++.+.-|...
T Consensus 203 ~~~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r~fP~s~ 241 (250)
T COG3063 203 GGAQAESLLLGIRIAKRLGDRAAAQRYQAQLQRLFPYSE 241 (250)
T ss_pred ccccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcH
Confidence 335555555555666666777766666666666666643
No 91
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=98.98 E-value=2.9e-08 Score=92.88 Aligned_cols=80 Identities=16% Similarity=0.126 Sum_probs=42.6
Q ss_pred CHHHHHHHHhhCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCc-HHHHHHHHH
Q 007573 456 QLEKAWQITQGMP--FEADTGVWGSLLAACVINLNVELGELAAKKMRELDPQNSAVYVMLSNLYAAAGMW-RDVTRVRLL 532 (597)
Q Consensus 456 ~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~-~~A~~~~~~ 532 (597)
.+.+|..+|+++. ..+++.+.+.+..++...|++++|..++.++++.+|+++.++.+++-+....|+. +.+.+++.+
T Consensus 182 ~~~~A~y~f~El~~~~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~~d~LaNliv~~~~~gk~~~~~~~~l~q 261 (290)
T PF04733_consen 182 KYQDAFYIFEELSDKFGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPNDPDTLANLIVCSLHLGKPTEAAERYLSQ 261 (290)
T ss_dssp CCCHHHHHHHHHHCCS--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHTT-TCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHhCCChhHHHHHHHH
Confidence 3455555555543 2344555555555666666666666666666666666666666666666666655 444555555
Q ss_pred HHh
Q 007573 533 MKE 535 (597)
Q Consensus 533 ~~~ 535 (597)
+..
T Consensus 262 L~~ 264 (290)
T PF04733_consen 262 LKQ 264 (290)
T ss_dssp CHH
T ss_pred HHH
Confidence 444
No 92
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.97 E-value=1e-06 Score=88.62 Aligned_cols=353 Identities=14% Similarity=0.097 Sum_probs=211.5
Q ss_pred ChhhHHHHHH--HHHcCCChHHHHHHHccCCCCCchhHHHHHHHHHhCCChhHHHHHHHhc------------ccCCcch
Q 007573 142 NTATYNAMIS--GFLKHGRLEEATRLFEQMPRRNVISYTAMLDGFMKKGEVDKARALSDYM------------SFKNVVS 207 (597)
Q Consensus 142 ~~~~~~~l~~--~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m------------~~~~~~~ 207 (597)
|+.+-.++++ .|..-|+.+.|.+-.+-+. +...|..|.+.|.+..+.+-|.-.+-.| .+.+..+
T Consensus 725 d~~TRkaml~FSfyvtiG~MD~AfksI~~Ik--S~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~~~e~ 802 (1416)
T KOG3617|consen 725 DESTRKAMLDFSFYVTIGSMDAAFKSIQFIK--SDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQNGEED 802 (1416)
T ss_pred CHHHHHhhhceeEEEEeccHHHHHHHHHHHh--hhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhCCcch
Confidence 5556666653 4666777777776665553 3456777777777777777776666665 1112133
Q ss_pred HHHHHHHHHcCCChHHHHHHHhhcCCCCCCchHHHHHHHHHHhcCCHHHHHHHHhhcCCC-ChhHHHHHHHHHHHcCChh
Q 007573 208 WTVMITGYVKNERFCEARELFYRMPDYDKNVFVVTAMITGFCKVGMLENARLLFERIQPK-DCVSFNAMIAGYAQNGVAE 286 (597)
Q Consensus 208 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~li~~~~~~g~~~ 286 (597)
-..+.-.....|.+++|+.+|.+.++ |-.|-..|-..|.+++|.++-+.-..- =..||.....-+...++.+
T Consensus 803 eakvAvLAieLgMlEeA~~lYr~ckR-------~DLlNKlyQs~g~w~eA~eiAE~~DRiHLr~Tyy~yA~~Lear~Di~ 875 (1416)
T KOG3617|consen 803 EAKVAVLAIELGMLEEALILYRQCKR-------YDLLNKLYQSQGMWSEAFEIAETKDRIHLRNTYYNYAKYLEARRDIE 875 (1416)
T ss_pred hhHHHHHHHHHhhHHHHHHHHHHHHH-------HHHHHHHHHhcccHHHHHHHHhhccceehhhhHHHHHHHHHhhccHH
Confidence 33333344567778888888877665 334555666777777777766532221 1235666666666667777
Q ss_pred HHHHHHHHh----------HHCC---------CCCCHHHHHHHHHHHhccchhHHHHHHHHHHHHhCCCCcccHHHHHHH
Q 007573 287 EALRLFSGM----------IKMD---------MQPDDATLVSVFTACSALQLLNEGRQSHVLVIRNGFEANVSVCNAVIT 347 (597)
Q Consensus 287 ~A~~~~~~m----------~~~g---------~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 347 (597)
.|++.|++. +... -..|...|......+...|+.+.|..++..+.. |-+++.
T Consensus 876 ~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D---------~fs~Vr 946 (1416)
T KOG3617|consen 876 AALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKD---------YFSMVR 946 (1416)
T ss_pred HHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhh---------hhhhee
Confidence 777666542 1111 122334444455555667777777777766544 344556
Q ss_pred HHHhcCCHHHHHHHHhccCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHhc----------
Q 007573 348 MYSRCGGILDSELAFRQIHSPNLVSWNTIIAAFAQHGHYEKALIFFSQMGLNGFDPDGITFLSLLSACGH---------- 417 (597)
Q Consensus 348 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~---------- 417 (597)
..|-+|+.++|-++-++ ..|......+...|-..|++.+|+.+|.+.+. |...|+.|-.
T Consensus 947 I~C~qGk~~kAa~iA~e--sgd~AAcYhlaR~YEn~g~v~~Av~FfTrAqa---------fsnAIRlcKEnd~~d~L~nl 1015 (1416)
T KOG3617|consen 947 IKCIQGKTDKAARIAEE--SGDKAACYHLARMYENDGDVVKAVKFFTRAQA---------FSNAIRLCKENDMKDRLANL 1015 (1416)
T ss_pred eEeeccCchHHHHHHHh--cccHHHHHHHHHHhhhhHHHHHHHHHHHHHHH---------HHHHHHHHHhcCHHHHHHHH
Confidence 66667777777777665 34666666677888888888888888877643 3333333222
Q ss_pred -----cCcHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHH-HhhC------------CCCCCHHHHHHH
Q 007573 418 -----AGKVNESMDLFELMVKVYGIIPSSEHYTCLVDILSRAGQLEKAWQI-TQGM------------PFEADTGVWGSL 479 (597)
Q Consensus 418 -----~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~-~~~~------------~~~p~~~~~~~l 479 (597)
..+.-.|-++|++. |. ....-+..|-++|.+.+|+++ |..- ....|+...+.-
T Consensus 1016 al~s~~~d~v~aArYyEe~----g~-----~~~~AVmLYHkAGm~~kALelAF~tqQf~aL~lIa~DLd~~sDp~ll~Rc 1086 (1416)
T KOG3617|consen 1016 ALMSGGSDLVSAARYYEEL----GG-----YAHKAVMLYHKAGMIGKALELAFRTQQFSALDLIAKDLDAGSDPKLLRRC 1086 (1416)
T ss_pred HhhcCchhHHHHHHHHHHc----ch-----hhhHHHHHHHhhcchHHHHHHHHhhcccHHHHHHHHhcCCCCCHHHHHHH
Confidence 22333344444433 11 122345567788888888776 3211 123356667776
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhc----------------------CC------CC---CchHHHHHHHHHhcCCcHHHHH
Q 007573 480 LAACVINLNVELGELAAKKMREL----------------------DP------QN---SAVYVMLSNLYAAAGMWRDVTR 528 (597)
Q Consensus 480 ~~~~~~~g~~~~a~~~~~~~~~~----------------------~p------~~---~~~~~~l~~~~~~~g~~~~A~~ 528 (597)
...+....++++|..++-.+.+. -| +. ..++..++..|.++|.|..|.+
T Consensus 1087 adFF~~~~qyekAV~lL~~ar~~~~AlqlC~~~nv~vtee~aE~mTp~Kd~~~~e~~R~~vLeqvae~c~qQG~Yh~AtK 1166 (1416)
T KOG3617|consen 1087 ADFFENNQQYEKAVNLLCLAREFSGALQLCKNRNVRVTEEFAELMTPTKDDMPNEQERKQVLEQVAELCLQQGAYHAATK 1166 (1416)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhHHHHHhcCcCcCCCccHHHHHHHHHHHHHHHHhccchHHHHH
Confidence 67777777788887776554431 11 11 2567789999999999998877
Q ss_pred HHHH
Q 007573 529 VRLL 532 (597)
Q Consensus 529 ~~~~ 532 (597)
-|.+
T Consensus 1167 KfTQ 1170 (1416)
T KOG3617|consen 1167 KFTQ 1170 (1416)
T ss_pred HHhh
Confidence 6544
No 93
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.95 E-value=1.7e-06 Score=76.92 Aligned_cols=401 Identities=13% Similarity=0.072 Sum_probs=188.4
Q ss_pred HHHHHHHHHcCCChHHHHHHHccCCCC---ChhhHHHHHHHHHcCCChHHHHHHHccCCC--CCchhHH-HHHHHHHhCC
Q 007573 115 WNCMIAGCIDNDRIDDAFDYFQAMPER---NTATYNAMISGFLKHGRLEEATRLFEQMPR--RNVISYT-AMLDGFMKKG 188 (597)
Q Consensus 115 ~~~ll~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~-~li~~~~~~g 188 (597)
+.+++..+.+..++.+|++++....+. +....+.|...|-+..++..|...++++.. |...-|. --...+.+.+
T Consensus 13 ftaviy~lI~d~ry~DaI~~l~s~~Er~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~~qYrlY~AQSLY~A~ 92 (459)
T KOG4340|consen 13 FTAVVYRLIRDARYADAIQLLGSELERSPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQLHPELEQYRLYQAQSLYKAC 92 (459)
T ss_pred hHHHHHHHHHHhhHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHhc
Confidence 444455555555666666655554432 223344455555556666666666655543 2222221 1234445555
Q ss_pred ChhHHHHHHHhcccC-CcchHHHHHH--HHHcCCChHHHHHHHhhcCCCCCCchHHHHHHHHHHhcCCHHHHHHHHhhcC
Q 007573 189 EVDKARALSDYMSFK-NVVSWTVMIT--GYVKNERFCEARELFYRMPDYDKNVFVVTAMITGFCKVGMLENARLLFERIQ 265 (597)
Q Consensus 189 ~~~~A~~~~~~m~~~-~~~~~~~ll~--~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 265 (597)
.+..|+++...|... +...-..-+. .....+++..+..++++... ..+..+.+.......+.|+++.|.+-|+...
T Consensus 93 i~ADALrV~~~~~D~~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~-en~Ad~~in~gCllykegqyEaAvqkFqaAl 171 (459)
T KOG4340|consen 93 IYADALRVAFLLLDNPALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPS-ENEADGQINLGCLLYKEGQYEAAVQKFQAAL 171 (459)
T ss_pred ccHHHHHHHHHhcCCHHHHHHHHHHHHHHhcccccCcchHHHHHhccC-CCccchhccchheeeccccHHHHHHHHHHHH
Confidence 566666655555332 1111111111 12234555555555554432 0122233333334445555555555555443
Q ss_pred C----CChhHHHHHHHHHHHcCChhHHHHHHHHhHHCCCCCCHHH----HHHHHHHHhccchhHHHHHHHHHHHHhCCCC
Q 007573 266 P----KDCVSFNAMIAGYAQNGVAEEALRLFSGMIKMDMQPDDAT----LVSVFTACSALQLLNEGRQSHVLVIRNGFEA 337 (597)
Q Consensus 266 ~----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~----~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~ 337 (597)
+ ....+||..+. ..+.|+++.|++...++.++|++..... -+-.+.+-+-.+-......-
T Consensus 172 qvsGyqpllAYniALa-Hy~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDvrsvgNt~~lh~Sa----------- 239 (459)
T KOG4340|consen 172 QVSGYQPLLAYNLALA-HYSSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDVRSVGNTLVLHQSA----------- 239 (459)
T ss_pred hhcCCCchhHHHHHHH-HHhhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCchhcccchHHHHHHH-----------
Confidence 3 12234443332 2333455555555555555554321110 00000000000000000000
Q ss_pred cccHHHHHHHHHHhcCCHHHHHHHHhccCC-----CChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCChHHHHHHH
Q 007573 338 NVSVCNAVITMYSRCGGILDSELAFRQIHS-----PNLVSWNTIIAAFAQHGHYEKALIFFSQMGLNGFDPDGITFLSLL 412 (597)
Q Consensus 338 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll 412 (597)
-+..+|.-...+.+.|+.+.|.+.+..|++ .|++|...+.-.- ..+++.+..+-+.-+.+.. +-...||..++
T Consensus 240 l~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~n-~~~~p~~g~~KLqFLL~~n-PfP~ETFANlL 317 (459)
T KOG4340|consen 240 LVEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALMN-MDARPTEGFEKLQFLLQQN-PFPPETFANLL 317 (459)
T ss_pred HHHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHhc-ccCCccccHHHHHHHHhcC-CCChHHHHHHH
Confidence 011233334456678899999999999983 4666666554322 2455555555555555543 23457888888
Q ss_pred HHHhccCcHHHHHHHHHHhHHhcCCC-CChHHHHHHHHHHhh-cCCHHHHHHHHhhCCCCCCHHHHHHHHHH--HHhcCC
Q 007573 413 SACGHAGKVNESMDLFELMVKVYGII-PSSEHYTCLVDILSR-AGQLEKAWQITQGMPFEADTGVWGSLLAA--CVINLN 488 (597)
Q Consensus 413 ~~~~~~g~~~~a~~~~~~~~~~~~~~-p~~~~~~~l~~~~~~-~g~~~~A~~~~~~~~~~p~~~~~~~l~~~--~~~~g~ 488 (597)
-.|++..-++.|-.++.+-... ... .+...|+ |++++.- .-..++|++-++.+...-....-..-+.. -...++
T Consensus 318 llyCKNeyf~lAADvLAEn~~l-Tyk~L~~Yly~-LLdaLIt~qT~pEea~KKL~~La~~l~~kLRklAi~vQe~r~~~d 395 (459)
T KOG4340|consen 318 LLYCKNEYFDLAADVLAENAHL-TYKFLTPYLYD-LLDALITCQTAPEEAFKKLDGLAGMLTEKLRKLAIQVQEARHNRD 395 (459)
T ss_pred HHHhhhHHHhHHHHHHhhCcch-hHHHhhHHHHH-HHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 8999988888888776542111 000 1223333 3444443 34667776665544300000000011111 111121
Q ss_pred ---HHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCcHHHHHHHHHHHh
Q 007573 489 ---VELGELAAKKMRELDPQNSAVYVMLSNLYAAAGMWRDVTRVRLLMKE 535 (597)
Q Consensus 489 ---~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 535 (597)
...+++-+++.+++-. .+...-++.|.+..++.-+.++|..-.+
T Consensus 396 d~a~R~ai~~Yd~~LE~YL---PVlMa~AkiyW~~~Dy~~vEk~Fr~Sve 442 (459)
T KOG4340|consen 396 DEAIRKAVNEYDETLEKYL---PVLMAQAKIYWNLEDYPMVEKIFRKSVE 442 (459)
T ss_pred HHHHHHHHHHHHHHHHHHH---HHHHHHHHhhccccccHHHHHHHHHHHh
Confidence 2233344444444322 2456678889999999999999987655
No 94
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=98.94 E-value=1.8e-07 Score=87.54 Aligned_cols=156 Identities=13% Similarity=0.096 Sum_probs=116.2
Q ss_pred HHHHHhcCCHHHHHHHHhccCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHh----ccCcH
Q 007573 346 ITMYSRCGGILDSELAFRQIHSPNLVSWNTIIAAFAQHGHYEKALIFFSQMGLNGFDPDGITFLSLLSACG----HAGKV 421 (597)
Q Consensus 346 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~----~~g~~ 421 (597)
..++...|++++|.+++... .+.......+..|.+.++++.|.+.++.|.+. ..| .+...+..++. ..+.+
T Consensus 109 A~i~~~~~~~~~AL~~l~~~--~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~--~eD-~~l~qLa~awv~l~~g~e~~ 183 (290)
T PF04733_consen 109 ATILFHEGDYEEALKLLHKG--GSLELLALAVQILLKMNRPDLAEKELKNMQQI--DED-SILTQLAEAWVNLATGGEKY 183 (290)
T ss_dssp HHHHCCCCHHHHHHCCCTTT--TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCC--SCC-HHHHHHHHHHHHHHHTTTCC
T ss_pred HHHHHHcCCHHHHHHHHHcc--CcccHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCc-HHHHHHHHHHHHHHhCchhH
Confidence 34566678888888877765 56677777889999999999999999999864 334 34444444432 23468
Q ss_pred HHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHhhCC-CCC-CHHHHHHHHHHHHhcCCH-HHHHHHHHH
Q 007573 422 NESMDLFELMVKVYGIIPSSEHYTCLVDILSRAGQLEKAWQITQGMP-FEA-DTGVWGSLLAACVINLNV-ELGELAAKK 498 (597)
Q Consensus 422 ~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~l~~~~~~~g~~-~~a~~~~~~ 498 (597)
.+|..+|+++.. ...+++.+.+.+..+....|++++|.+++.+.. ..| ++.++..++......|+. +.+.+++.+
T Consensus 184 ~~A~y~f~El~~--~~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~~d~LaNliv~~~~~gk~~~~~~~~l~q 261 (290)
T PF04733_consen 184 QDAFYIFEELSD--KFGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPNDPDTLANLIVCSLHLGKPTEAAERYLSQ 261 (290)
T ss_dssp CHHHHHHHHHHC--CS--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHTT-TCHHHHHHHHH
T ss_pred HHHHHHHHHHHh--ccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHhCCChhHHHHHHHH
Confidence 999999999875 556788899999999999999999999988754 444 566788888888888887 778889999
Q ss_pred HHhcCCCCCc
Q 007573 499 MRELDPQNSA 508 (597)
Q Consensus 499 ~~~~~p~~~~ 508 (597)
+....|+++.
T Consensus 262 L~~~~p~h~~ 271 (290)
T PF04733_consen 262 LKQSNPNHPL 271 (290)
T ss_dssp CHHHTTTSHH
T ss_pred HHHhCCCChH
Confidence 9989998654
No 95
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=98.93 E-value=1.5e-06 Score=87.51 Aligned_cols=298 Identities=13% Similarity=0.103 Sum_probs=155.5
Q ss_pred HHHHHcCCChHHHHHHHhhcCCCCCC-chHHHHHHHHHHhcCCHHHHHHHHhhcCCCCh---hHHHHHHHHHHHc-----
Q 007573 212 ITGYVKNERFCEARELFYRMPDYDKN-VFVVTAMITGFCKVGMLENARLLFERIQPKDC---VSFNAMIAGYAQN----- 282 (597)
Q Consensus 212 l~~~~~~g~~~~a~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~---~~~~~li~~~~~~----- 282 (597)
...+...|++++|++.+..-.+.-+| .......+..+.+.|+.++|..++..+.+.|+ .-|..+..+..-.
T Consensus 11 ~~il~e~g~~~~AL~~L~~~~~~I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rNPdn~~Yy~~L~~~~g~~~~~~~ 90 (517)
T PF12569_consen 11 NSILEEAGDYEEALEHLEKNEKQILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRNPDNYDYYRGLEEALGLQLQLSD 90 (517)
T ss_pred HHHHHHCCCHHHHHHHHHhhhhhCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHhhhccccc
Confidence 45667899999999999887764455 44567788999999999999999999876433 3455555555222
Q ss_pred CChhHHHHHHHHhHHCCCCCCHHHHHHHHHHHhccchh-HHHHHHHHHHHHhCCCCcccHHHHHHHHHHhcCCHHHHHHH
Q 007573 283 GVAEEALRLFSGMIKMDMQPDDATLVSVFTACSALQLL-NEGRQSHVLVIRNGFEANVSVCNAVITMYSRCGGILDSELA 361 (597)
Q Consensus 283 g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 361 (597)
...+...++|+++...- |.......+.-.+.....+ ..+..++...++.|+|+ +++.|-..|....+.+-...+
T Consensus 91 ~~~~~~~~~y~~l~~~y--p~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvPs---lF~~lk~Ly~d~~K~~~i~~l 165 (517)
T PF12569_consen 91 EDVEKLLELYDELAEKY--PRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVPS---LFSNLKPLYKDPEKAAIIESL 165 (517)
T ss_pred ccHHHHHHHHHHHHHhC--ccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCch---HHHHHHHHHcChhHHHHHHHH
Confidence 24677788888887653 5444433333233332233 45566677777777643 566666666543333333333
Q ss_pred HhccCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCChH--HHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCC
Q 007573 362 FRQIHSPNLVSWNTIIAAFAQHGHYEKALIFFSQMGLNGFDPDGI--TFLSLLSACGHAGKVNESMDLFELMVKVYGIIP 439 (597)
Q Consensus 362 ~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~--~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p 439 (597)
+.... ..+...+.+...- ....-.|... ++..+...|...|++++|.++.+..+.. .|
T Consensus 166 ~~~~~-----------~~l~~~~~~~~~~------~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~h---tP 225 (517)
T PF12569_consen 166 VEEYV-----------NSLESNGSFSNGD------DEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEH---TP 225 (517)
T ss_pred HHHHH-----------HhhcccCCCCCcc------ccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhc---CC
Confidence 22211 0000000000000 0000122221 2233334444555555555555555432 33
Q ss_pred C-hHHHHHHHHHHhhcCCHHHHHHHHhhCC-CC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC---------C
Q 007573 440 S-SEHYTCLVDILSRAGQLEKAWQITQGMP-FE-ADTGVWGSLLAACVINLNVELGELAAKKMRELDPQN---------S 507 (597)
Q Consensus 440 ~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~-p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~---------~ 507 (597)
+ ++.|..-+..|-+.|++++|.+.++... .. .|..+-+-....+.+.|++++|..++....+.+.++ .
T Consensus 226 t~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~ 305 (517)
T PF12569_consen 226 TLVELYMTKARILKHAGDLKEAAEAMDEARELDLADRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLSNLNDMQCM 305 (517)
T ss_pred CcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCChhhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHH
Confidence 3 4455555555555555555555555443 12 233333333344455555555555555544433111 1
Q ss_pred chHHHHHHHHHhcCCcHHHHHHHHHHH
Q 007573 508 AVYVMLSNLYAAAGMWRDVTRVRLLMK 534 (597)
Q Consensus 508 ~~~~~l~~~~~~~g~~~~A~~~~~~~~ 534 (597)
....-.+.+|.+.|++..|++.|..+.
T Consensus 306 Wf~~e~a~a~~r~~~~~~ALk~~~~v~ 332 (517)
T PF12569_consen 306 WFETECAEAYLRQGDYGLALKRFHAVL 332 (517)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 112344556666666666665555444
No 96
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=98.93 E-value=9.6e-07 Score=90.75 Aligned_cols=450 Identities=12% Similarity=0.052 Sum_probs=266.5
Q ss_pred hHHHHHHHhhcCCCCcc---hHHHHHHHHHhCCChhHHHHHHhhCCCC---CcchHHHHHHHHHcCCChHHHHHHHccCC
Q 007573 66 ISAARQLFDQMTTKDVI---TWNAIITGYWQNGFLQESKNLFQSMPVK---NIVSWNCMIAGCIDNDRIDDAFDYFQAMP 139 (597)
Q Consensus 66 ~~~A~~~~~~~~~~~~~---~~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~ll~~~~~~~~~~~A~~~~~~~~ 139 (597)
...|...|=+..+-|+. .|..|...|....+...|...|++..+- +..++....+.|++..+++.|..+.-...
T Consensus 474 ~~~al~ali~alrld~~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLDatdaeaaaa~adtyae~~~we~a~~I~l~~~ 553 (1238)
T KOG1127|consen 474 SALALHALIRALRLDVSLAPAFAFLGQIYRDSDDMKRAKKCFDKAFELDATDAEAAAASADTYAEESTWEEAFEICLRAA 553 (1238)
T ss_pred HHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhccccHHHHHHHHHHHh
Confidence 55566655555553332 6888888887777888888888888754 67788888888999888888888843333
Q ss_pred CCC-----hhhHHHHHHHHHcCCChHHHHHHHccCCC---CCchhHHHHHHHHHhCCChhHHHHHHHhcccCCcch-HHH
Q 007573 140 ERN-----TATYNAMISGFLKHGRLEEATRLFEQMPR---RNVISYTAMLDGFMKKGEVDKARALSDYMSFKNVVS-WTV 210 (597)
Q Consensus 140 ~~~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~-~~~ 210 (597)
+.+ ...|....-.|.+.++...|..-|+...+ .|...|..+..+|...|++..|+.+|.+....++.. |..
T Consensus 554 qka~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~dPkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~LrP~s~y~~ 633 (1238)
T KOG1127|consen 554 QKAPAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTDPKDYNLWLGLGEAYPESGRYSHALKVFTKASLLRPLSKYGR 633 (1238)
T ss_pred hhchHHHHHhhhhhccccccCccchhhHHHHHHHHhcCCchhHHHHHHHHHHHHhcCceehHHHhhhhhHhcCcHhHHHH
Confidence 222 12344455567788888888888887765 356678888899999999999999998875444322 222
Q ss_pred --HHHHHHcCCChHHHHHHHhhcCCCCCC--------chHHHHHHHHHHhcCCHHHHHHHHhhcCC-----------CCh
Q 007573 211 --MITGYVKNERFCEARELFYRMPDYDKN--------VFVVTAMITGFCKVGMLENARLLFERIQP-----------KDC 269 (597)
Q Consensus 211 --ll~~~~~~g~~~~a~~~~~~~~~~~~~--------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----------~~~ 269 (597)
..-..+..|++.++...++.+.....+ ..++..+...+.-.|-..+|..+++...+ .+.
T Consensus 634 fk~A~~ecd~GkYkeald~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksie~f~~~l~h~~~~~~ 713 (1238)
T KOG1127|consen 634 FKEAVMECDNGKYKEALDALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSIESFIVSLIHSLQSDR 713 (1238)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhhhhhH
Confidence 223345678888888888877552111 11222222222222333333333332211 122
Q ss_pred hHHHHHHHHHHHcCChhHHHHHHHHhHHCCCCCCHHHHHHHHHHHhccchh---H---HHHHHHHHHHHhCCCCcccHHH
Q 007573 270 VSFNAMIAGYAQNGVAEEALRLFSGMIKMDMQPDDATLVSVFTACSALQLL---N---EGRQSHVLVIRNGFEANVSVCN 343 (597)
Q Consensus 270 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~---~---~a~~~~~~~~~~~~~~~~~~~~ 343 (597)
..|-.+.+ |..+|-+.. .. .|+......+..-.-..+.. + .|.+.+-. ......+...|.
T Consensus 714 ~~Wi~asd----------ac~~f~q~e-~~-~vn~h~l~il~~q~e~~~~l~~~d~l~Lg~~c~~~--hlsl~~~~~~Wy 779 (1238)
T KOG1127|consen 714 LQWIVASD----------ACYIFSQEE-PS-IVNMHYLIILSKQLEKTGALKKNDLLFLGYECGIA--HLSLAIHMYPWY 779 (1238)
T ss_pred HHHHHHhH----------HHHHHHHhc-cc-chHHHHHHHHHHHHHhcccCcchhHHHHHHHHhhH--HHHHhhccchHH
Confidence 23333322 222332222 11 22222211111111111111 1 01111110 111122244444
Q ss_pred HHHHHHHh----cC----CHHHHHHHHhccC---CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCChHHHHHHH
Q 007573 344 AVITMYSR----CG----GILDSELAFRQIH---SPNLVSWNTIIAAFAQHGHYEKALIFFSQMGLNGFDPDGITFLSLL 412 (597)
Q Consensus 344 ~l~~~~~~----~g----~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll 412 (597)
.|+..|.+ +| +...|...+.+.. ..+...||.+.-. ...|++.-|...|-+-.... +....+|..+.
T Consensus 780 NLGinylr~f~~l~et~~~~~~Ai~c~KkaV~L~ann~~~WnaLGVl-sg~gnva~aQHCfIks~~se-p~~~~~W~Nlg 857 (1238)
T KOG1127|consen 780 NLGINYLRYFLLLGETMKDACTAIRCCKKAVSLCANNEGLWNALGVL-SGIGNVACAQHCFIKSRFSE-PTCHCQWLNLG 857 (1238)
T ss_pred HHhHHHHHHHHHcCCcchhHHHHHHHHHHHHHHhhccHHHHHHHHHh-hccchhhhhhhhhhhhhhcc-ccchhheeccc
Confidence 44444333 22 3345666666554 4667788887655 66688888888777666542 44567888888
Q ss_pred HHHhccCcHHHHHHHHHHhHHhcCCCCC-hHHHHHHHHHHhhcCCHHHHHHHHhhC-----C--CCCCHHHHHHHHHHHH
Q 007573 413 SACGHAGKVNESMDLFELMVKVYGIIPS-SEHYTCLVDILSRAGQLEKAWQITQGM-----P--FEADTGVWGSLLAACV 484 (597)
Q Consensus 413 ~~~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-----~--~~p~~~~~~~l~~~~~ 484 (597)
..+....+++.|...|...+ .+.|+ ...|..........|+.-++.++|..- . .-|+...|........
T Consensus 858 vL~l~n~d~E~A~~af~~~q---SLdP~nl~~WlG~Ali~eavG~ii~~~~lfaHs~el~~~~gka~~f~Yw~c~te~h~ 934 (1238)
T KOG1127|consen 858 VLVLENQDFEHAEPAFSSVQ---SLDPLNLVQWLGEALIPEAVGRIIERLILFAHSDELCSKEGKAKKFQYWLCATEIHL 934 (1238)
T ss_pred eeEEecccHHHhhHHHHhhh---hcCchhhHHHHHHHHhHHHHHHHHHHHHHHHhhHHhhccccccchhhHHHHHHHHHH
Confidence 88999999999999999876 45554 556655555566788888888888651 1 2344445544444455
Q ss_pred hcCCHHHHHH----------HHHHHHhcCCCCCchHHHHHHHHHhcCCcHHHHHHHHHHH
Q 007573 485 INLNVELGEL----------AAKKMRELDPQNSAVYVMLSNLYAAAGMWRDVTRVRLLMK 534 (597)
Q Consensus 485 ~~g~~~~a~~----------~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 534 (597)
..|+.++-+. .+++.+...|+...+|...+...-+.+.+.+|.+...+..
T Consensus 935 ~Ng~~e~~I~t~~ki~sAs~al~~yf~~~p~~~fAy~~~gstlEhL~ey~~a~ela~Rli 994 (1238)
T KOG1127|consen 935 QNGNIEESINTARKISSASLALSYYFLGHPQLCFAYAANGSTLEHLEEYRAALELATRLI 994 (1238)
T ss_pred hccchHHHHHHhhhhhhhHHHHHHHHhcCcchhHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 5666554444 3445555678888899999999999999999888877764
No 97
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.92 E-value=1e-05 Score=83.35 Aligned_cols=230 Identities=15% Similarity=0.225 Sum_probs=135.7
Q ss_pred ChhhHHHHHHHHHcCCChHHHHHHHccCC-CCCch-----hHHHHHHHHHhCCChhHHHHHHHhcccCCcchHHHHHHHH
Q 007573 142 NTATYNAMISGFLKHGRLEEATRLFEQMP-RRNVI-----SYTAMLDGFMKKGEVDKARALSDYMSFKNVVSWTVMITGY 215 (597)
Q Consensus 142 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~~-----~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~ll~~~ 215 (597)
|+.--+.-+.++...+-..+-+++++++. ++++. .-|.|+-.-.+ -+..++.+..+++..-|.. .+...+
T Consensus 983 dPe~vS~tVkAfMtadLp~eLIELLEKIvL~~S~Fse~~nLQnLLiLtAik-ad~trVm~YI~rLdnyDa~---~ia~ia 1058 (1666)
T KOG0985|consen 983 DPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSENRNLQNLLILTAIK-ADRTRVMEYINRLDNYDAP---DIAEIA 1058 (1666)
T ss_pred ChHHHHHHHHHHHhcCCcHHHHHHHHHHhcCCcccccchhhhhhHHHHHhh-cChHHHHHHHHHhccCCch---hHHHHH
Confidence 45555556666777777777777777664 23222 22333333232 2344455555555332221 233445
Q ss_pred HcCCChHHHHHHHhhcCCCCCCchHHHHHHHHHHhcCCHHHHHHHHhhcCCCChhHHHHHHHHHHHcCChhHHHHHHHHh
Q 007573 216 VKNERFCEARELFYRMPDYDKNVFVVTAMITGFCKVGMLENARLLFERIQPKDCVSFNAMIAGYAQNGVAEEALRLFSGM 295 (597)
Q Consensus 216 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 295 (597)
...+-+++|..+|+... .+....+.|+. ..+.++.|.+.-++..++ ..|..+..+-.+.|...+|++-|-+
T Consensus 1059 i~~~LyEEAF~ifkkf~---~n~~A~~VLie---~i~~ldRA~efAe~~n~p--~vWsqlakAQL~~~~v~dAieSyik- 1129 (1666)
T KOG0985|consen 1059 IENQLYEEAFAIFKKFD---MNVSAIQVLIE---NIGSLDRAYEFAERCNEP--AVWSQLAKAQLQGGLVKDAIESYIK- 1129 (1666)
T ss_pred hhhhHHHHHHHHHHHhc---ccHHHHHHHHH---HhhhHHHHHHHHHhhCCh--HHHHHHHHHHHhcCchHHHHHHHHh-
Confidence 55666777777776532 23333344433 235566666666665544 4578888888888888888776643
Q ss_pred HHCCCCCCHHHHHHHHHHHhccchhHHHHHHHHHHHHhCCCCcccHHHHHHHHHHhcCCHHHHHHHHhccCCCChhhHHH
Q 007573 296 IKMDMQPDDATLVSVFTACSALQLLNEGRQSHVLVIRNGFEANVSVCNAVITMYSRCGGILDSELAFRQIHSPNLVSWNT 375 (597)
Q Consensus 296 ~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 375 (597)
..|...|..++..+.+.|.+++...++..+.+..-.|.+ -+.|+-+|++.+++.+-++++. .||......
T Consensus 1130 -----adDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~i--d~eLi~AyAkt~rl~elE~fi~---gpN~A~i~~ 1199 (1666)
T KOG0985|consen 1130 -----ADDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPYI--DSELIFAYAKTNRLTELEEFIA---GPNVANIQQ 1199 (1666)
T ss_pred -----cCCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccc--hHHHHHHHHHhchHHHHHHHhc---CCCchhHHH
Confidence 235667788888888888888888888777776655544 3467778888887777666543 344444444
Q ss_pred HHHHHHHcCCHHHHHHHHH
Q 007573 376 IIAAFAQHGHYEKALIFFS 394 (597)
Q Consensus 376 li~~~~~~g~~~~A~~~~~ 394 (597)
+..-|...|.++.|.-+|.
T Consensus 1200 vGdrcf~~~~y~aAkl~y~ 1218 (1666)
T KOG0985|consen 1200 VGDRCFEEKMYEAAKLLYS 1218 (1666)
T ss_pred HhHHHhhhhhhHHHHHHHH
Confidence 5555555555555544443
No 98
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=98.90 E-value=4.7e-06 Score=82.40 Aligned_cols=196 Identities=8% Similarity=-0.016 Sum_probs=116.8
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhccC---CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCC-CCCh--HHHHHHHHHH
Q 007573 342 CNAVITMYSRCGGILDSELAFRQIH---SPNLVSWNTIIAAFAQHGHYEKALIFFSQMGLNGF-DPDG--ITFLSLLSAC 415 (597)
Q Consensus 342 ~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~~--~~~~~ll~~~ 415 (597)
...+...+...|++++|+..+++.. +.+...+..+...+...|++++|..++++...... .|+. ..+..+...+
T Consensus 117 ~~~~a~~~~~~G~~~~A~~~~~~al~~~p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~ 196 (355)
T cd05804 117 LGMLAFGLEEAGQYDRAEEAARRALELNPDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFY 196 (355)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHH
Confidence 3445556777777887777777665 34455667777777888888888888877765421 1222 2344566777
Q ss_pred hccCcHHHHHHHHHHhHHhcCCCCChHHH-H--HHHHHHhhcCCHHHHHHH---HhhCC-CCCC---HHHHHHHHHHHHh
Q 007573 416 GHAGKVNESMDLFELMVKVYGIIPSSEHY-T--CLVDILSRAGQLEKAWQI---TQGMP-FEAD---TGVWGSLLAACVI 485 (597)
Q Consensus 416 ~~~g~~~~a~~~~~~~~~~~~~~p~~~~~-~--~l~~~~~~~g~~~~A~~~---~~~~~-~~p~---~~~~~~l~~~~~~ 485 (597)
...|++++|..++++........+..... + .+...+...|....+.+. ..... ..|. .........++..
T Consensus 197 ~~~G~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~ 276 (355)
T cd05804 197 LERGDYEAALAIYDTHIAPSAESDPALDLLDAASLLWRLELAGHVDVGDRWEDLADYAAWHFPDHGLAFNDLHAALALAG 276 (355)
T ss_pred HHCCCHHHHHHHHHHHhccccCCChHHHHhhHHHHHHHHHhcCCCChHHHHHHHHHHHHhhcCcccchHHHHHHHHHHhc
Confidence 77888888888888765321111221111 1 223333334422222221 11111 0011 1122245566778
Q ss_pred cCCHHHHHHHHHHHHhcCCC---------CCchHHHHHHHHHhcCCcHHHHHHHHHHHhCC
Q 007573 486 NLNVELGELAAKKMRELDPQ---------NSAVYVMLSNLYAAAGMWRDVTRVRLLMKEQG 537 (597)
Q Consensus 486 ~g~~~~a~~~~~~~~~~~p~---------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 537 (597)
.|+.+.|...++.+....-. ........+.++...|++++|.+.+......+
T Consensus 277 ~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~~g~~~~A~~~L~~al~~a 337 (355)
T cd05804 277 AGDKDALDKLLAALKGRASSADDNKQPARDVGLPLAEALYAFAEGNYATALELLGPVRDDL 337 (355)
T ss_pred CCCHHHHHHHHHHHHHHHhccCchhhhHHhhhHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 88999999998887653211 24455677788899999999999999887654
No 99
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=98.89 E-value=3.6e-06 Score=76.37 Aligned_cols=285 Identities=13% Similarity=0.089 Sum_probs=171.1
Q ss_pred hHHHHHHHHHcCCChHHHHHHHccCCCCCchhHHHHH---HHHHhCCChhHHHHHHHhcc--cCCcc-hHHHHHHHHHcC
Q 007573 145 TYNAMISGFLKHGRLEEATRLFEQMPRRNVISYTAML---DGFMKKGEVDKARALSDYMS--FKNVV-SWTVMITGYVKN 218 (597)
Q Consensus 145 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li---~~~~~~g~~~~A~~~~~~m~--~~~~~-~~~~ll~~~~~~ 218 (597)
-..-|.+.+...|++..|+.-|....+.|+..|.++. ..|...|+...|+.=+.+.. +||-. .-..-...+.+.
T Consensus 40 khlElGk~lla~~Q~sDALt~yHaAve~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlelKpDF~~ARiQRg~vllK~ 119 (504)
T KOG0624|consen 40 KHLELGKELLARGQLSDALTHYHAAVEGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLELKPDFMAARIQRGVVLLKQ 119 (504)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhcCCccchhhHHHHHhcCccHHHHHHHhchhhhhc
Confidence 3344666677778888888888887777777776654 46777787777777776663 34422 222334567788
Q ss_pred CChHHHHHHHhhcCCCCCCchHH----------------HHHHHHHHhcCCHHHHHHHHhhcCC---CChhHHHHHHHHH
Q 007573 219 ERFCEARELFYRMPDYDKNVFVV----------------TAMITGFCKVGMLENARLLFERIQP---KDCVSFNAMIAGY 279 (597)
Q Consensus 219 g~~~~a~~~~~~~~~~~~~~~~~----------------~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~ 279 (597)
|.+++|..-|+.+++..|+..+- ...+..+.-.|+...|+.....+.+ .|...|..-..+|
T Consensus 120 Gele~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~~Wda~l~~~Rakc~ 199 (504)
T KOG0624|consen 120 GELEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEIQPWDASLRQARAKCY 199 (504)
T ss_pred ccHHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhcCcchhHHHHHHHHHH
Confidence 99999998888888766642211 1122233334444444444444322 3444444445555
Q ss_pred HHcCChhHHHHHHHHhHHCCCCCCHHHHHHHHHHHhccchhHHHHHHHHHHHHhCCCCcccHHHHHHHHHHhcCCHHHHH
Q 007573 280 AQNGVAEEALRLFSGMIKMDMQPDDATLVSVFTACSALQLLNEGRQSHVLVIRNGFEANVSVCNAVITMYSRCGGILDSE 359 (597)
Q Consensus 280 ~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 359 (597)
...|++..|+.=++...+ .. ..++..+..+...+...|+.+.++
T Consensus 200 i~~~e~k~AI~Dlk~ask-----------------------------------Ls-~DnTe~~ykis~L~Y~vgd~~~sL 243 (504)
T KOG0624|consen 200 IAEGEPKKAIHDLKQASK-----------------------------------LS-QDNTEGHYKISQLLYTVGDAENSL 243 (504)
T ss_pred HhcCcHHHHHHHHHHHHh-----------------------------------cc-ccchHHHHHHHHHHHhhhhHHHHH
Confidence 555555555544443333 22 223333333444455555555555
Q ss_pred HHHhccCC--CChh----hHHHH---------HHHHHHcCCHHHHHHHHHHHHHCCCCCChH---HHHHHHHHHhccCcH
Q 007573 360 LAFRQIHS--PNLV----SWNTI---------IAAFAQHGHYEKALIFFSQMGLNGFDPDGI---TFLSLLSACGHAGKV 421 (597)
Q Consensus 360 ~~~~~~~~--~~~~----~~~~l---------i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~---~~~~ll~~~~~~g~~ 421 (597)
...++..+ ||.. .|..+ +......+++.++++..+...+.......+ .+..+-.++...|++
T Consensus 244 ~~iRECLKldpdHK~Cf~~YKklkKv~K~les~e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~ 323 (504)
T KOG0624|consen 244 KEIRECLKLDPDHKLCFPFYKKLKKVVKSLESAEQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQF 323 (504)
T ss_pred HHHHHHHccCcchhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCCH
Confidence 55554442 2211 11111 123455788888888888877653221222 344555677788999
Q ss_pred HHHHHHHHHhHHhcCCCCC-hHHHHHHHHHHhhcCCHHHHHHHHhhCC
Q 007573 422 NESMDLFELMVKVYGIIPS-SEHYTCLVDILSRAGQLEKAWQITQGMP 468 (597)
Q Consensus 422 ~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 468 (597)
.+|++...++. .+.|+ ..++.--.++|.-...+++|+.-|+...
T Consensus 324 ~eAiqqC~evL---~~d~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~ 368 (504)
T KOG0624|consen 324 GEAIQQCKEVL---DIDPDDVQVLCDRAEAYLGDEMYDDAIHDYEKAL 368 (504)
T ss_pred HHHHHHHHHHH---hcCchHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 99999988886 55666 7888888889998999999999988875
No 100
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=98.87 E-value=1.5e-06 Score=83.77 Aligned_cols=90 Identities=14% Similarity=0.101 Sum_probs=71.7
Q ss_pred CCCCchhhHHHhhc------CCCcchHHHHHHHHHhcCChHHHHHHHhhcCC--CC-cchHHHHHHHHHhCCChhHHHHH
Q 007573 33 FTPHSSNCLIRLFS------TQYVFVNNAKISALSRAGKISAARQLFDQMTT--KD-VITWNAIITGYWQNGFLQESKNL 103 (597)
Q Consensus 33 ~~~~~~~~~~~~~~------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~-~~~~~~li~~~~~~g~~~~A~~~ 103 (597)
++......++++|- +++.+.|+.=..+|+..|++++|.+-=.+-.+ |+ +..|+....++...|++++|+.-
T Consensus 13 ~s~~d~~~ai~~~t~ai~l~p~nhvlySnrsaa~a~~~~~~~al~da~k~~~l~p~w~kgy~r~Gaa~~~lg~~~eA~~a 92 (539)
T KOG0548|consen 13 FSSGDFETAIRLFTEAIMLSPTNHVLYSNRSAAYASLGSYEKALKDATKTRRLNPDWAKGYSRKGAALFGLGDYEEAILA 92 (539)
T ss_pred cccccHHHHHHHHHHHHccCCCccchhcchHHHHHHHhhHHHHHHHHHHHHhcCCchhhHHHHhHHHHHhcccHHHHHHH
Confidence 44556677777775 77889999999999999999999886666555 33 23699999999999999999999
Q ss_pred HhhCCCC---CcchHHHHHHHH
Q 007573 104 FQSMPVK---NIVSWNCMIAGC 122 (597)
Q Consensus 104 ~~~~~~~---~~~~~~~ll~~~ 122 (597)
|.+-++. |...++-+..++
T Consensus 93 y~~GL~~d~~n~~L~~gl~~a~ 114 (539)
T KOG0548|consen 93 YSEGLEKDPSNKQLKTGLAQAY 114 (539)
T ss_pred HHHHhhcCCchHHHHHhHHHhh
Confidence 9998864 566667777666
No 101
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.84 E-value=0.00016 Score=75.01 Aligned_cols=239 Identities=12% Similarity=0.146 Sum_probs=156.8
Q ss_pred CChhHHHHHHHHHHHcCChhHHHHHHHHhHHCCCCC-CHHHHHHHHHHHhccchhHHHHHHHHHHHHhC-----------
Q 007573 267 KDCVSFNAMIAGYAQNGVAEEALRLFSGMIKMDMQP-DDATLVSVFTACSALQLLNEGRQSHVLVIRNG----------- 334 (597)
Q Consensus 267 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~----------- 334 (597)
.|+..-..-+.++...+-+.+-+++++++.-.+-.- .......++-.-+-..+...+..+...+-..+
T Consensus 982 ~dPe~vS~tVkAfMtadLp~eLIELLEKIvL~~S~Fse~~nLQnLLiLtAikad~trVm~YI~rLdnyDa~~ia~iai~~ 1061 (1666)
T KOG0985|consen 982 QDPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSENRNLQNLLILTAIKADRTRVMEYINRLDNYDAPDIAEIAIEN 1061 (1666)
T ss_pred CChHHHHHHHHHHHhcCCcHHHHHHHHHHhcCCcccccchhhhhhHHHHHhhcChHHHHHHHHHhccCCchhHHHHHhhh
Confidence 366667777888888899999999998876432111 11111111111111122222222222222111
Q ss_pred ------------CCCcccHHHHHHHHHHhcCCHHHHHHHHhccCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCC
Q 007573 335 ------------FEANVSVCNAVITMYSRCGGILDSELAFRQIHSPNLVSWNTIIAAFAQHGHYEKALIFFSQMGLNGFD 402 (597)
Q Consensus 335 ------------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~ 402 (597)
+..+....+.|++ ..+.++.|.+.-++.. .+..|+.+..+-.+.|...+|++-|-+.
T Consensus 1062 ~LyEEAF~ifkkf~~n~~A~~VLie---~i~~ldRA~efAe~~n--~p~vWsqlakAQL~~~~v~dAieSyika------ 1130 (1666)
T KOG0985|consen 1062 QLYEEAFAIFKKFDMNVSAIQVLIE---NIGSLDRAYEFAERCN--EPAVWSQLAKAQLQGGLVKDAIESYIKA------ 1130 (1666)
T ss_pred hHHHHHHHHHHHhcccHHHHHHHHH---HhhhHHHHHHHHHhhC--ChHHHHHHHHHHHhcCchHHHHHHHHhc------
Confidence 0111222222221 2244444544444443 4568999999999999999999887543
Q ss_pred CChHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHhhCCCCCCHHHHHHHHHH
Q 007573 403 PDGITFLSLLSACGHAGKVNESMDLFELMVKVYGIIPSSEHYTCLVDILSRAGQLEKAWQITQGMPFEADTGVWGSLLAA 482 (597)
Q Consensus 403 p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~ 482 (597)
-|+..|..++..+.+.|.+++-.+++...++. .-.|..+ ..|+-+|++.+++.+-++++. .|+..-...++.-
T Consensus 1131 dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk-~~E~~id--~eLi~AyAkt~rl~elE~fi~----gpN~A~i~~vGdr 1203 (1666)
T KOG0985|consen 1131 DDPSNYLEVIDVASRTGKYEDLVKYLLMARKK-VREPYID--SELIFAYAKTNRLTELEEFIA----GPNVANIQQVGDR 1203 (1666)
T ss_pred CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHh-hcCccch--HHHHHHHHHhchHHHHHHHhc----CCCchhHHHHhHH
Confidence 46678999999999999999999999877765 5555544 578999999999999877764 5888888889999
Q ss_pred HHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCcHHHHHHHH
Q 007573 483 CVINLNVELGELAAKKMRELDPQNSAVYVMLSNLYAAAGMWRDVTRVRL 531 (597)
Q Consensus 483 ~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~ 531 (597)
|...|.++.|.-+|.. .+.|..|+..+...|.+..|...-+
T Consensus 1204 cf~~~~y~aAkl~y~~--------vSN~a~La~TLV~LgeyQ~AVD~aR 1244 (1666)
T KOG0985|consen 1204 CFEEKMYEAAKLLYSN--------VSNFAKLASTLVYLGEYQGAVDAAR 1244 (1666)
T ss_pred HhhhhhhHHHHHHHHH--------hhhHHHHHHHHHHHHHHHHHHHHhh
Confidence 9999999988888754 3457777888888787777665433
No 102
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.83 E-value=5.7e-07 Score=82.99 Aligned_cols=181 Identities=11% Similarity=0.049 Sum_probs=107.1
Q ss_pred ccHHHHHHHHHHhcCCHHHHHHHHhccC--CC-Ch---hhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCC-CC-hHHHHH
Q 007573 339 VSVCNAVITMYSRCGGILDSELAFRQIH--SP-NL---VSWNTIIAAFAQHGHYEKALIFFSQMGLNGFD-PD-GITFLS 410 (597)
Q Consensus 339 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~-~~---~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-p~-~~~~~~ 410 (597)
...+..+...+...|++++|...|+++. .| +. .++..+..++...|++++|+..++++.+.... |. ..++..
T Consensus 33 ~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~ 112 (235)
T TIGR03302 33 AEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYAYYL 112 (235)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHHHHH
Confidence 3445555666666677777766666554 12 11 24555566666667777777777666653211 11 113333
Q ss_pred HHHHHhcc--------CcHHHHHHHHHHhHHhcCCCCCh-HHHHHHHHHHhhcCCHHHHHHHHhhCCCCCCHHHHHHHHH
Q 007573 411 LLSACGHA--------GKVNESMDLFELMVKVYGIIPSS-EHYTCLVDILSRAGQLEKAWQITQGMPFEADTGVWGSLLA 481 (597)
Q Consensus 411 ll~~~~~~--------g~~~~a~~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~ 481 (597)
+..++... |+.++|.+.++.+.+. .|+. ..+..+... +...... ......+..
T Consensus 113 ~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~---~p~~~~~~~a~~~~----~~~~~~~-----------~~~~~~~a~ 174 (235)
T TIGR03302 113 RGLSNYNQIDRVDRDQTAAREAFEAFQELIRR---YPNSEYAPDAKKRM----DYLRNRL-----------AGKELYVAR 174 (235)
T ss_pred HHHHHHHhcccccCCHHHHHHHHHHHHHHHHH---CCCChhHHHHHHHH----HHHHHHH-----------HHHHHHHHH
Confidence 33444332 5566666666666543 2221 122111111 0000000 001124556
Q ss_pred HHHhcCCHHHHHHHHHHHHhcCCCC---CchHHHHHHHHHhcCCcHHHHHHHHHHHhCC
Q 007573 482 ACVINLNVELGELAAKKMRELDPQN---SAVYVMLSNLYAAAGMWRDVTRVRLLMKEQG 537 (597)
Q Consensus 482 ~~~~~g~~~~a~~~~~~~~~~~p~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 537 (597)
.+...|++++|+..++++++..|++ +..+..++.++...|++++|.++++.+....
T Consensus 175 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~~ 233 (235)
T TIGR03302 175 FYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGANY 233 (235)
T ss_pred HHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 6889999999999999999997765 4788999999999999999999999886543
No 103
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.83 E-value=1.4e-05 Score=89.73 Aligned_cols=357 Identities=11% Similarity=-0.010 Sum_probs=218.9
Q ss_pred HHHHHhCCChhHHHHHHHhcccCCcc--hHHHHHHHHHcCCChHHHHHHHhhcCC--CCCCchHHHHHHHHHHhcCCHHH
Q 007573 181 LDGFMKKGEVDKARALSDYMSFKNVV--SWTVMITGYVKNERFCEARELFYRMPD--YDKNVFVVTAMITGFCKVGMLEN 256 (597)
Q Consensus 181 i~~~~~~g~~~~A~~~~~~m~~~~~~--~~~~ll~~~~~~g~~~~a~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~ 256 (597)
...+...|++.+|..........+.. ............|+++.+...+..+.. ...+..........+...|++++
T Consensus 348 a~~~~~~g~~~~Al~~a~~a~d~~~~~~ll~~~a~~l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~~g~~~~ 427 (903)
T PRK04841 348 AEAWLAQGFPSEAIHHALAAGDAQLLRDILLQHGWSLFNQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQSQHRYSE 427 (903)
T ss_pred HHHHHHCCCHHHHHHHHHHCCCHHHHHHHHHHhHHHHHhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHHCCCHHH
Confidence 34455556666665555444322211 111223344567788877777776632 11222333444555667889998
Q ss_pred HHHHHhhcCC----CC---h-----hHHHHHHHHHHHcCChhHHHHHHHHhHHCCCCCCH----HHHHHHHHHHhccchh
Q 007573 257 ARLLFERIQP----KD---C-----VSFNAMIAGYAQNGVAEEALRLFSGMIKMDMQPDD----ATLVSVFTACSALQLL 320 (597)
Q Consensus 257 A~~~~~~~~~----~~---~-----~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~----~~~~~ll~~~~~~~~~ 320 (597)
|...+..... .+ . .....+...+...|++++|...+++....-...+. .....+...+...|++
T Consensus 428 a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~ 507 (903)
T PRK04841 428 VNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGEL 507 (903)
T ss_pred HHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCH
Confidence 8888765421 11 1 12223344566789999999999887763111121 2233444456678999
Q ss_pred HHHHHHHHHHHHhCCC---C--cccHHHHHHHHHHhcCCHHHHHHHHhccCC-------CC----hhhHHHHHHHHHHcC
Q 007573 321 NEGRQSHVLVIRNGFE---A--NVSVCNAVITMYSRCGGILDSELAFRQIHS-------PN----LVSWNTIIAAFAQHG 384 (597)
Q Consensus 321 ~~a~~~~~~~~~~~~~---~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-------~~----~~~~~~li~~~~~~g 384 (597)
+.|...+.......-. + .......+...+...|+++.|...+++... ++ ...+..+...+...|
T Consensus 508 ~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G 587 (903)
T PRK04841 508 ARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWA 587 (903)
T ss_pred HHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhc
Confidence 9999888877653211 1 123455667778889999999888776541 11 123444556677789
Q ss_pred CHHHHHHHHHHHHHCC--CCCC--hHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChHHH-----HHHHHHHhhcC
Q 007573 385 HYEKALIFFSQMGLNG--FDPD--GITFLSLLSACGHAGKVNESMDLFELMVKVYGIIPSSEHY-----TCLVDILSRAG 455 (597)
Q Consensus 385 ~~~~A~~~~~~m~~~g--~~p~--~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~-----~~l~~~~~~~g 455 (597)
++++|...+.+..... ..+. ...+..+.......|+.++|.+.++.+............+ ...+..+...|
T Consensus 588 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 667 (903)
T PRK04841 588 RLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTG 667 (903)
T ss_pred CHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCC
Confidence 9999999988876421 1222 2344445567778899999999988875431111111111 11224455689
Q ss_pred CHHHHHHHHhhCCC-C-CCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC------CCchHHHHHHHHHhcCCc
Q 007573 456 QLEKAWQITQGMPF-E-ADT----GVWGSLLAACVINLNVELGELAAKKMRELDPQ------NSAVYVMLSNLYAAAGMW 523 (597)
Q Consensus 456 ~~~~A~~~~~~~~~-~-p~~----~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~------~~~~~~~l~~~~~~~g~~ 523 (597)
+.+.|.+.+..... . ... ..+..+..++...|+.++|...++++++.... ...++..++.++...|+.
T Consensus 668 ~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~ 747 (903)
T PRK04841 668 DKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQILLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRK 747 (903)
T ss_pred CHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCH
Confidence 99999999876551 1 111 12345666788899999999999999875211 134677888999999999
Q ss_pred HHHHHHHHHHHhCC
Q 007573 524 RDVTRVRLLMKEQG 537 (597)
Q Consensus 524 ~~A~~~~~~~~~~~ 537 (597)
++|.+.+.+..+..
T Consensus 748 ~~A~~~L~~Al~la 761 (903)
T PRK04841 748 SEAQRVLLEALKLA 761 (903)
T ss_pred HHHHHHHHHHHHHh
Confidence 99999999998754
No 104
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.77 E-value=4.6e-07 Score=75.67 Aligned_cols=94 Identities=6% Similarity=-0.185 Sum_probs=68.6
Q ss_pred HHHHHHHHhhcCCHHHHHHHHhhCC-CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcC
Q 007573 444 YTCLVDILSRAGQLEKAWQITQGMP-FEA-DTGVWGSLLAACVINLNVELGELAAKKMRELDPQNSAVYVMLSNLYAAAG 521 (597)
Q Consensus 444 ~~~l~~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 521 (597)
+..+...+...|++++|...|+... ..| +...|..++.++...|++++|+..|+++++++|+++.++..++.++...|
T Consensus 27 ~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p~~~~a~~~lg~~l~~~g 106 (144)
T PRK15359 27 VYASGYASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEYTTAINFYGHALMLDASHPEPVYQTGVCLKMMG 106 (144)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHcC
Confidence 4456666777777777777777654 334 55677777777777777777777777777777777777777777777777
Q ss_pred CcHHHHHHHHHHHhCC
Q 007573 522 MWRDVTRVRLLMKEQG 537 (597)
Q Consensus 522 ~~~~A~~~~~~~~~~~ 537 (597)
++++|++.++...+..
T Consensus 107 ~~~eAi~~~~~Al~~~ 122 (144)
T PRK15359 107 EPGLAREAFQTAIKMS 122 (144)
T ss_pred CHHHHHHHHHHHHHhC
Confidence 7777777777776543
No 105
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.77 E-value=8.7e-07 Score=78.32 Aligned_cols=147 Identities=7% Similarity=0.080 Sum_probs=112.8
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCC
Q 007573 377 IAAFAQHGHYEKALIFFSQMGLNGFDPDGITFLSLLSACGHAGKVNESMDLFELMVKVYGIIPSSEHYTCLVDILSRAGQ 456 (597)
Q Consensus 377 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~ 456 (597)
+..|...|+++.+....+.+.. |. ..+...++.+++...++...+. -+.+...|..+...|...|+
T Consensus 23 ~~~Y~~~g~~~~v~~~~~~~~~----~~--------~~~~~~~~~~~~i~~l~~~L~~--~P~~~~~w~~Lg~~~~~~g~ 88 (198)
T PRK10370 23 VGSYLLSPKWQAVRAEYQRLAD----PL--------HQFASQQTPEAQLQALQDKIRA--NPQNSEQWALLGEYYLWRND 88 (198)
T ss_pred HHHHHHcchHHHHHHHHHHHhC----cc--------ccccCchhHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHCCC
Confidence 3457778888776554433221 11 0122356677777777777653 34568889999999999999
Q ss_pred HHHHHHHHhhCC-CCC-CHHHHHHHHHH-HHhcCC--HHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCcHHHHHHHH
Q 007573 457 LEKAWQITQGMP-FEA-DTGVWGSLLAA-CVINLN--VELGELAAKKMRELDPQNSAVYVMLSNLYAAAGMWRDVTRVRL 531 (597)
Q Consensus 457 ~~~A~~~~~~~~-~~p-~~~~~~~l~~~-~~~~g~--~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~ 531 (597)
+++|...+++.. ..| +...+..+..+ +...|+ .++|.++++++++.+|+++.++..++..+.+.|++++|+..|+
T Consensus 89 ~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~ 168 (198)
T PRK10370 89 YDNALLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQTREMIDKALALDANEVTALMLLASDAFMQADYAQAIELWQ 168 (198)
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHH
Confidence 999999998875 455 56678888876 467777 5999999999999999999999999999999999999999999
Q ss_pred HHHhCC
Q 007573 532 LMKEQG 537 (597)
Q Consensus 532 ~~~~~~ 537 (597)
++.+..
T Consensus 169 ~aL~l~ 174 (198)
T PRK10370 169 KVLDLN 174 (198)
T ss_pred HHHhhC
Confidence 998755
No 106
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=98.77 E-value=7e-05 Score=72.50 Aligned_cols=124 Identities=13% Similarity=0.225 Sum_probs=85.4
Q ss_pred CCCcchHHHHHHHHHhcCChHHHHHHHhhcCC--C-CcchHHHHHHHHHhCCChhHHHHHHhhCCCC--CcchHHHHHHH
Q 007573 47 TQYVFVNNAKISALSRAGKISAARQLFDQMTT--K-DVITWNAIITGYWQNGFLQESKNLFQSMPVK--NIVSWNCMIAG 121 (597)
Q Consensus 47 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~ll~~ 121 (597)
+-|+.+|+.||.-+... .+++++..++++.. | .+..|..-|....+..+++....+|.+.... +...|...|+-
T Consensus 17 P~di~sw~~lire~qt~-~~~~~R~~YEq~~~~FP~s~r~W~~yi~~El~skdfe~VEkLF~RCLvkvLnlDLW~lYl~Y 95 (656)
T KOG1914|consen 17 PYDIDSWSQLIREAQTQ-PIDKVRETYEQLVNVFPSSPRAWKLYIERELASKDFESVEKLFSRCLVKVLNLDLWKLYLSY 95 (656)
T ss_pred CccHHHHHHHHHHHccC-CHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhHhHHHHHHHH
Confidence 78999999999987655 99999999999977 4 3447999999999999999999999998754 77778877765
Q ss_pred HHc-CCChHHHHH----HHcc------CCCCChhhHHHHHHH---------HHcCCChHHHHHHHccCCC
Q 007573 122 CID-NDRIDDAFD----YFQA------MPERNTATYNAMISG---------FLKHGRLEEATRLFEQMPR 171 (597)
Q Consensus 122 ~~~-~~~~~~A~~----~~~~------~~~~~~~~~~~l~~~---------~~~~g~~~~A~~~~~~~~~ 171 (597)
--+ .++...+.. .|+. |...+...|+..+.. |..+.+++..+++++++..
T Consensus 96 VR~~~~~~~~~r~~m~qAy~f~l~kig~di~s~siW~eYi~FL~~vea~gk~ee~QRI~~vRriYqral~ 165 (656)
T KOG1914|consen 96 VRETKGKLFGYREKMVQAYDFALEKIGMDIKSYSIWDEYINFLEGVEAVGKYEENQRITAVRRIYQRALV 165 (656)
T ss_pred HHHHccCcchHHHHHHHHHHHHHHHhccCcccchhHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHhc
Confidence 432 223222111 1111 112334455555543 3344566777788887764
No 107
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=98.71 E-value=3.4e-05 Score=76.26 Aligned_cols=233 Identities=12% Similarity=0.028 Sum_probs=140.1
Q ss_pred cCCHHHHHHHHhccCC--C-ChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHhccCcHHHHHHHH
Q 007573 352 CGGILDSELAFRQIHS--P-NLVSWNTIIAAFAQHGHYEKALIFFSQMGLNGFDPDGITFLSLLSACGHAGKVNESMDLF 428 (597)
Q Consensus 352 ~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~ 428 (597)
.+....+.+.+....+ | .......+...+...|++++|...+++..+.. +.+...+..+...+...|++++|...+
T Consensus 93 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~-p~~~~~~~~la~i~~~~g~~~eA~~~l 171 (355)
T cd05804 93 SGMRDHVARVLPLWAPENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELN-PDDAWAVHAVAHVLEMQGRFKEGIAFM 171 (355)
T ss_pred ccCchhHHHHHhccCcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHH
Confidence 3455555555554332 2 23344456677889999999999999999864 444667788888999999999999999
Q ss_pred HHhHHhcCCCCCh--HHHHHHHHHHhhcCCHHHHHHHHhhCC-CCC--C-HHHH-H--HHHHHHHhcCCHHHHHHH---H
Q 007573 429 ELMVKVYGIIPSS--EHYTCLVDILSRAGQLEKAWQITQGMP-FEA--D-TGVW-G--SLLAACVINLNVELGELA---A 496 (597)
Q Consensus 429 ~~~~~~~~~~p~~--~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p--~-~~~~-~--~l~~~~~~~g~~~~a~~~---~ 496 (597)
+.........|+. ..|..+...+...|++++|..++++.. ..| . .... + .++.-+...|..+.+.+. .
T Consensus 172 ~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~w~~~~ 251 (355)
T cd05804 172 ESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAPSAESDPALDLLDAASLLWRLELAGHVDVGDRWEDLA 251 (355)
T ss_pred HhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhccccCCChHHHHhhHHHHHHHHHhcCCCChHHHHHHHH
Confidence 9887642222332 345678899999999999999999864 223 2 1111 1 223334445543333333 2
Q ss_pred HHHHhcCCCC--CchHHHHHHHHHhcCCcHHHHHHHHHHHhCCCcc-CCCeeEEEECCEEEEEEeCCCCCcchHHHHHHH
Q 007573 497 KKMRELDPQN--SAVYVMLSNLYAAAGMWRDVTRVRLLMKEQGVTK-QCAYSWIEIGNKVHYFLGGDMSHPCIDKIHLEL 573 (597)
Q Consensus 497 ~~~~~~~p~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~s~~~~~~~~~~~~~~~~~~p~~~~~~~~l 573 (597)
.......|.. ...-...+.++...|+.++|.++++.+....... ..+..+..+.-.+- .-......++..++...|
T Consensus 252 ~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~l-~A~~~~~~g~~~~A~~~L 330 (355)
T cd05804 252 DYAAWHFPDHGLAFNDLHAALALAGAGDKDALDKLLAALKGRASSADDNKQPARDVGLPLA-EALYAFAEGNYATALELL 330 (355)
T ss_pred HHHHhhcCcccchHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhccCchhhhHHhhhHHHH-HHHHHHHcCCHHHHHHHH
Confidence 2211111222 2223467888899999999999999987643221 00111111000000 000001245667777788
Q ss_pred HHHHHHHhhcCCc
Q 007573 574 KRASVQMKSVDDF 586 (597)
Q Consensus 574 ~~~~~~~~~~~~~ 586 (597)
........+.|++
T Consensus 331 ~~al~~a~~~ggs 343 (355)
T cd05804 331 GPVRDDLARIGGS 343 (355)
T ss_pred HHHHHHHHHhCCc
Confidence 7777777777764
No 108
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.69 E-value=2.9e-06 Score=90.36 Aligned_cols=198 Identities=14% Similarity=0.116 Sum_probs=165.7
Q ss_pred CCcccHHHHHHHHHHhcCCHHHHHHHHhccCC--------CChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC-hH
Q 007573 336 EANVSVCNAVITMYSRCGGILDSELAFRQIHS--------PNLVSWNTIIAAFAQHGHYEKALIFFSQMGLNGFDPD-GI 406 (597)
Q Consensus 336 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--------~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~ 406 (597)
|.+...|-..|......++.++|++++++..+ .-...|.+++......|.-+...++|+++.+. -| -.
T Consensus 1455 PNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqy---cd~~~ 1531 (1710)
T KOG1070|consen 1455 PNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQY---CDAYT 1531 (1710)
T ss_pred CCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHh---cchHH
Confidence 55667788888888899999999999887762 12347888888888888888999999999863 33 34
Q ss_pred HHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHhhCC-CCCC---HHHHHHHHHH
Q 007573 407 TFLSLLSACGHAGKVNESMDLFELMVKVYGIIPSSEHYTCLVDILSRAGQLEKAWQITQGMP-FEAD---TGVWGSLLAA 482 (597)
Q Consensus 407 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p~---~~~~~~l~~~ 482 (597)
.|..|...|.+.+..++|.++++.|.+.++ -....|...++.+.+..+-++|..++++.. .-|. .....-.+..
T Consensus 1532 V~~~L~~iy~k~ek~~~A~ell~~m~KKF~--q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqL 1609 (1710)
T KOG1070|consen 1532 VHLKLLGIYEKSEKNDEADELLRLMLKKFG--QTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQL 1609 (1710)
T ss_pred HHHHHHHHHHHhhcchhHHHHHHHHHHHhc--chhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHH
Confidence 688889999999999999999999999766 567789999999999999999999998754 3333 3455556666
Q ss_pred HHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCcHHHHHHHHHHHhCCC
Q 007573 483 CVINLNVELGELAAKKMRELDPQNSAVYVMLSNLYAAAGMWRDVTRVRLLMKEQGV 538 (597)
Q Consensus 483 ~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 538 (597)
-.+.||.+++..+|+..+.-.|.-...|..+++.-.+.|+.+.++.+|+++...++
T Consensus 1610 EFk~GDaeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l 1665 (1710)
T KOG1070|consen 1610 EFKYGDAERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKL 1665 (1710)
T ss_pred HhhcCCchhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCC
Confidence 77899999999999999999999999999999999999999999999999998876
No 109
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.68 E-value=5.8e-05 Score=84.74 Aligned_cols=355 Identities=12% Similarity=0.006 Sum_probs=222.7
Q ss_pred HHHHHcCCChHHHHHHHccCCCCCch--hHHHHHHHHHhCCChhHHHHHHHhcc----cCCcchHHHHHHHHHcCCChHH
Q 007573 150 ISGFLKHGRLEEATRLFEQMPRRNVI--SYTAMLDGFMKKGEVDKARALSDYMS----FKNVVSWTVMITGYVKNERFCE 223 (597)
Q Consensus 150 ~~~~~~~g~~~~A~~~~~~~~~~~~~--~~~~li~~~~~~g~~~~A~~~~~~m~----~~~~~~~~~ll~~~~~~g~~~~ 223 (597)
...+...|++.+|..........+.. ............|+++.+..+++.+. ..+..........+...|++++
T Consensus 348 a~~~~~~g~~~~Al~~a~~a~d~~~~~~ll~~~a~~l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~~g~~~~ 427 (903)
T PRK04841 348 AEAWLAQGFPSEAIHHALAAGDAQLLRDILLQHGWSLFNQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQSQHRYSE 427 (903)
T ss_pred HHHHHHCCCHHHHHHHHHHCCCHHHHHHHHHHhHHHHHhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHHCCCHHH
Confidence 34455566666666655554432211 11222344556788888888877762 1233333445556677899999
Q ss_pred HHHHHhhcCCC-C-------CCc--hHHHHHHHHHHhcCCHHHHHHHHhhcCC----CCh----hHHHHHHHHHHHcCCh
Q 007573 224 ARELFYRMPDY-D-------KNV--FVVTAMITGFCKVGMLENARLLFERIQP----KDC----VSFNAMIAGYAQNGVA 285 (597)
Q Consensus 224 a~~~~~~~~~~-~-------~~~--~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~~----~~~~~li~~~~~~g~~ 285 (597)
+...+..+... . +.. .....+...+...|++++|...+++... .+. ...+.+...+...|++
T Consensus 428 a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~ 507 (903)
T PRK04841 428 VNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGEL 507 (903)
T ss_pred HHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCH
Confidence 99988876441 1 111 1222334556789999999998887532 222 2456677778889999
Q ss_pred hHHHHHHHHhHHCCC---CCC--HHHHHHHHHHHhccchhHHHHHHHHHHHHh----CCCC---cccHHHHHHHHHHhcC
Q 007573 286 EEALRLFSGMIKMDM---QPD--DATLVSVFTACSALQLLNEGRQSHVLVIRN----GFEA---NVSVCNAVITMYSRCG 353 (597)
Q Consensus 286 ~~A~~~~~~m~~~g~---~p~--~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~----~~~~---~~~~~~~l~~~~~~~g 353 (597)
++|...+.+.....- .+. ......+...+...|+++.|...+...... +... ....+..+...+...|
T Consensus 508 ~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G 587 (903)
T PRK04841 508 ARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWA 587 (903)
T ss_pred HHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhc
Confidence 999999988765311 111 223444555677889999999988776653 2211 1223445666777889
Q ss_pred CHHHHHHHHhccCC------C--ChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCC--CCCChH--HH--HHHHHHHhccC
Q 007573 354 GILDSELAFRQIHS------P--NLVSWNTIIAAFAQHGHYEKALIFFSQMGLNG--FDPDGI--TF--LSLLSACGHAG 419 (597)
Q Consensus 354 ~~~~A~~~~~~~~~------~--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g--~~p~~~--~~--~~ll~~~~~~g 419 (597)
++++|...+++... + ....+..+...+...|++++|.+.+.+..... ...... .. ...+..+...|
T Consensus 588 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 667 (903)
T PRK04841 588 RLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTG 667 (903)
T ss_pred CHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCC
Confidence 99999988877641 1 12344446667788999999999998875421 111110 10 11123345578
Q ss_pred cHHHHHHHHHHhHHhcCCCCCh----HHHHHHHHHHhhcCCHHHHHHHHhhCC-------CCCC-HHHHHHHHHHHHhcC
Q 007573 420 KVNESMDLFELMVKVYGIIPSS----EHYTCLVDILSRAGQLEKAWQITQGMP-------FEAD-TGVWGSLLAACVINL 487 (597)
Q Consensus 420 ~~~~a~~~~~~~~~~~~~~p~~----~~~~~l~~~~~~~g~~~~A~~~~~~~~-------~~p~-~~~~~~l~~~~~~~g 487 (597)
+.+.|.+.+...... . .... ..+..+..++...|+.++|...+++.. ..++ ..+...+..++...|
T Consensus 668 ~~~~A~~~l~~~~~~-~-~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G 745 (903)
T PRK04841 668 DKEAAANWLRQAPKP-E-FANNHFLQGQWRNIARAQILLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQG 745 (903)
T ss_pred CHHHHHHHHHhcCCC-C-CccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcC
Confidence 999999887665431 1 1111 113467778889999999999988764 1111 235566677789999
Q ss_pred CHHHHHHHHHHHHhcCCCC
Q 007573 488 NVELGELAAKKMRELDPQN 506 (597)
Q Consensus 488 ~~~~a~~~~~~~~~~~p~~ 506 (597)
+.++|...+.+++++....
T Consensus 746 ~~~~A~~~L~~Al~la~~~ 764 (903)
T PRK04841 746 RKSEAQRVLLEALKLANRT 764 (903)
T ss_pred CHHHHHHHHHHHHHHhCcc
Confidence 9999999999999986554
No 110
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.67 E-value=7.8e-06 Score=72.80 Aligned_cols=286 Identities=13% Similarity=0.099 Sum_probs=152.6
Q ss_pred HHHHHHHHHcCCChHHHHHHHhhcCCCCC-CchHHHHHHHHHHhcCCHHHHHHHHhhcCCC--ChhHHH-HHHHHHHHcC
Q 007573 208 WTVMITGYVKNERFCEARELFYRMPDYDK-NVFVVTAMITGFCKVGMLENARLLFERIQPK--DCVSFN-AMIAGYAQNG 283 (597)
Q Consensus 208 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~-~li~~~~~~g 283 (597)
+.+.+..+.+..+++.|++++..-.+..| +......|..+|-...++..|-..++++... ...-|. --...+.+.+
T Consensus 13 ftaviy~lI~d~ry~DaI~~l~s~~Er~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~~qYrlY~AQSLY~A~ 92 (459)
T KOG4340|consen 13 FTAVVYRLIRDARYADAIQLLGSELERSPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQLHPELEQYRLYQAQSLYKAC 92 (459)
T ss_pred hHHHHHHHHHHhhHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHhc
Confidence 44455555666667777776665555444 4444555666666667777777777665542 222222 1234455666
Q ss_pred ChhHHHHHHHHhHHCCCCCCHHHHHHHHHHHhccchhHHHHHHHHHHHHhCCCCcccHHHHHHHHHHhcCCHHHHHHHHh
Q 007573 284 VAEEALRLFSGMIKMDMQPDDATLVSVFTACSALQLLNEGRQSHVLVIRNGFEANVSVCNAVITMYSRCGGILDSELAFR 363 (597)
Q Consensus 284 ~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 363 (597)
.+..|+++...|... |+...-..-+.+. .....+++..++.+.+
T Consensus 93 i~ADALrV~~~~~D~---~~L~~~~lqLqaA---------------------------------IkYse~Dl~g~rsLve 136 (459)
T KOG4340|consen 93 IYADALRVAFLLLDN---PALHSRVLQLQAA---------------------------------IKYSEGDLPGSRSLVE 136 (459)
T ss_pred ccHHHHHHHHHhcCC---HHHHHHHHHHHHH---------------------------------HhcccccCcchHHHHH
Confidence 667777766665532 2211111111110 0111233344444444
Q ss_pred ccC-CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCC----
Q 007573 364 QIH-SPNLVSWNTIIAAFAQHGHYEKALIFFSQMGLNGFDPDGITFLSLLSACGHAGKVNESMDLFELMVKVYGII---- 438 (597)
Q Consensus 364 ~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~---- 438 (597)
+.. +.+..+.+.......+.|++++|++-|+...+-|--.....|+..+. ..+.|+.+.|.++..+++.+ |++
T Consensus 137 Qlp~en~Ad~~in~gCllykegqyEaAvqkFqaAlqvsGyqpllAYniALa-Hy~~~qyasALk~iSEIieR-G~r~HPE 214 (459)
T KOG4340|consen 137 QLPSENEADGQINLGCLLYKEGQYEAAVQKFQAALQVSGYQPLLAYNLALA-HYSSRQYASALKHISEIIER-GIRQHPE 214 (459)
T ss_pred hccCCCccchhccchheeeccccHHHHHHHHHHHHhhcCCCchhHHHHHHH-HHhhhhHHHHHHHHHHHHHh-hhhcCCc
Confidence 443 22233333333333344555555555544443221112223333222 22334444444444444433 221
Q ss_pred ---------CC--------h-------HHHHHHHHHHhhcCCHHHHHHHHhhCC----CCCCHHHHHHHHHHHHhcCCHH
Q 007573 439 ---------PS--------S-------EHYTCLVDILSRAGQLEKAWQITQGMP----FEADTGVWGSLLAACVINLNVE 490 (597)
Q Consensus 439 ---------p~--------~-------~~~~~l~~~~~~~g~~~~A~~~~~~~~----~~p~~~~~~~l~~~~~~~g~~~ 490 (597)
|| . ..++.-...+.+.|+++.|.+-+-.|+ .+.|+.|...+.-. -..+++-
T Consensus 215 lgIGm~tegiDvrsvgNt~~lh~Sal~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~-n~~~~p~ 293 (459)
T KOG4340|consen 215 LGIGMTTEGIDVRSVGNTLVLHQSALVEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALM-NMDARPT 293 (459)
T ss_pred cCccceeccCchhcccchHHHHHHHHHHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHh-cccCCcc
Confidence 11 1 122223344568899999999999987 34567777655433 2345666
Q ss_pred HHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCcHHHHHHHHH
Q 007573 491 LGELAAKKMRELDPQNSAVYVMLSNLYAAAGMWRDVTRVRLL 532 (597)
Q Consensus 491 ~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 532 (597)
.+.+-+.-+++++|-++.++..++-.|++..-++-|..++-+
T Consensus 294 ~g~~KLqFLL~~nPfP~ETFANlLllyCKNeyf~lAADvLAE 335 (459)
T KOG4340|consen 294 EGFEKLQFLLQQNPFPPETFANLLLLYCKNEYFDLAADVLAE 335 (459)
T ss_pred ccHHHHHHHHhcCCCChHHHHHHHHHHhhhHHHhHHHHHHhh
Confidence 677777778889999999999999999999999888887654
No 111
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=98.66 E-value=2e-06 Score=70.45 Aligned_cols=118 Identities=9% Similarity=-0.003 Sum_probs=99.0
Q ss_pred hHHHHHHHHHHhhcCCHHHHHHHHhhCC-CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHH
Q 007573 441 SEHYTCLVDILSRAGQLEKAWQITQGMP-FEA-DTGVWGSLLAACVINLNVELGELAAKKMRELDPQNSAVYVMLSNLYA 518 (597)
Q Consensus 441 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 518 (597)
....-.+...+...|++++|.++|+.+. ..| +..-|..|..+|...|++++|+..|.++..++|++|..+..++.++.
T Consensus 35 l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~~~~ag~c~L 114 (157)
T PRK15363 35 LNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQAPWAAAECYL 114 (157)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHHH
Confidence 4455567777889999999999999865 455 56689999999999999999999999999999999999999999999
Q ss_pred hcCCcHHHHHHHHHHHhCCCccCCCeeEEEECCEEEEEEeCCCCCcchHHHHHHHHHHHHHHh
Q 007573 519 AAGMWRDVTRVRLLMKEQGVTKQCAYSWIEIGNKVHYFLGGDMSHPCIDKIHLELKRASVQMK 581 (597)
Q Consensus 519 ~~g~~~~A~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~~ 581 (597)
..|+.+.|.+-|+......- .+|+..++...-+.+...+.
T Consensus 115 ~lG~~~~A~~aF~~Ai~~~~-----------------------~~~~~~~l~~~A~~~L~~l~ 154 (157)
T PRK15363 115 ACDNVCYAIKALKAVVRICG-----------------------EVSEHQILRQRAEKMLQQLS 154 (157)
T ss_pred HcCCHHHHHHHHHHHHHHhc-----------------------cChhHHHHHHHHHHHHHHhh
Confidence 99999999999998876331 36777777776666665554
No 112
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.64 E-value=1.1e-06 Score=73.47 Aligned_cols=123 Identities=11% Similarity=-0.048 Sum_probs=97.8
Q ss_pred HHHHHHHHCCCCCChHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHhhCC-C
Q 007573 391 IFFSQMGLNGFDPDGITFLSLLSACGHAGKVNESMDLFELMVKVYGIIPSSEHYTCLVDILSRAGQLEKAWQITQGMP-F 469 (597)
Q Consensus 391 ~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~ 469 (597)
.++++..+. .|+. +.....++...|++++|...|+.+... -+.+...+..+..++.+.|++++|...|++.. .
T Consensus 14 ~~~~~al~~--~p~~--~~~~g~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l 87 (144)
T PRK15359 14 DILKQLLSV--DPET--VYASGYASWQEGDYSRAVIDFSWLVMA--QPWSWRAHIALAGTWMMLKEYTTAINFYGHALML 87 (144)
T ss_pred HHHHHHHHc--CHHH--HHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence 445555442 4443 455677788899999999999988752 23457888889999999999999999998876 4
Q ss_pred CC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHh
Q 007573 470 EA-DTGVWGSLLAACVINLNVELGELAAKKMRELDPQNSAVYVMLSNLYAA 519 (597)
Q Consensus 470 ~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~ 519 (597)
.| +...+..++.++...|+.++|+..+++++++.|+++..+...+.+...
T Consensus 88 ~p~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~p~~~~~~~~~~~~~~~ 138 (144)
T PRK15359 88 DASHPEPVYQTGVCLKMMGEPGLAREAFQTAIKMSYADASWSEIRQNAQIM 138 (144)
T ss_pred CCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHH
Confidence 44 677899999999999999999999999999999999988887776543
No 113
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.64 E-value=3.7e-06 Score=73.93 Aligned_cols=155 Identities=12% Similarity=0.140 Sum_probs=101.1
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhh
Q 007573 374 NTIIAAFAQHGHYEKALIFFSQMGLNGFDPDGITFLSLLSACGHAGKVNESMDLFELMVKVYGIIPSSEHYTCLVDILSR 453 (597)
Q Consensus 374 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 453 (597)
..+-..+...|+-+....+....... .+-|.......+....+.|++.+|...+++... .-++|.+.|+.+.-+|.+
T Consensus 70 ~~~a~a~~~~G~a~~~l~~~~~~~~~-~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~--l~p~d~~~~~~lgaaldq 146 (257)
T COG5010 70 AKLATALYLRGDADSSLAVLQKSAIA-YPKDRELLAAQGKNQIRNGNFGEAVSVLRKAAR--LAPTDWEAWNLLGAALDQ 146 (257)
T ss_pred HHHHHHHHhcccccchHHHHhhhhcc-CcccHHHHHHHHHHHHHhcchHHHHHHHHHHhc--cCCCChhhhhHHHHHHHH
Confidence 33445555566666666665554321 122334444566666777777777777777654 445667777777777777
Q ss_pred cCCHHHHHHHHhhCC-CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCcHHHHHHHH
Q 007573 454 AGQLEKAWQITQGMP-FEA-DTGVWGSLLAACVINLNVELGELAAKKMRELDPQNSAVYVMLSNLYAAAGMWRDVTRVRL 531 (597)
Q Consensus 454 ~g~~~~A~~~~~~~~-~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~ 531 (597)
.|++++|..-|.+.. ..| ++...+.+...+.-.|+.+.|+.++..+....+.++.+-..+..+....|++++|..+-.
T Consensus 147 ~Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~ad~~v~~NLAl~~~~~g~~~~A~~i~~ 226 (257)
T COG5010 147 LGRFDEARRAYRQALELAPNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPAADSRVRQNLALVVGLQGDFREAEDIAV 226 (257)
T ss_pred ccChhHHHHHHHHHHHhccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCCchHHHHHHHHHHhhcCChHHHHhhcc
Confidence 777777777666544 333 455667777777777777777777777777777777777777777777777777776543
No 114
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.63 E-value=4.4e-06 Score=73.48 Aligned_cols=134 Identities=16% Similarity=0.128 Sum_probs=113.3
Q ss_pred CCChHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHhhCC--CCCCHHHHHHH
Q 007573 402 DPDGITFLSLLSACGHAGKVNESMDLFELMVKVYGIIPSSEHYTCLVDILSRAGQLEKAWQITQGMP--FEADTGVWGSL 479 (597)
Q Consensus 402 ~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l 479 (597)
.|+......+-..+...|+-+....+...... ..+-|......++....+.|++.+|...+++.. .++|...|+.+
T Consensus 63 ~p~d~~i~~~a~a~~~~G~a~~~l~~~~~~~~--~~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~p~d~~~~~~l 140 (257)
T COG5010 63 NPEDLSIAKLATALYLRGDADSSLAVLQKSAI--AYPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLAPTDWEAWNLL 140 (257)
T ss_pred CcchHHHHHHHHHHHhcccccchHHHHhhhhc--cCcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccCCCChhhhhHH
Confidence 55433336666778888888888888776543 333456677779999999999999999999876 56688899999
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCcHHHHHHHHHHHhCC
Q 007573 480 LAACVINLNVELGELAAKKMRELDPQNSAVYVMLSNLYAAAGMWRDVTRVRLLMKEQG 537 (597)
Q Consensus 480 ~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 537 (597)
..+|.+.|++++|...|.+++++.|.++.++++++-.|.-.|+++.|..++......+
T Consensus 141 gaaldq~Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~ 198 (257)
T COG5010 141 GAALDQLGRFDEARRAYRQALELAPNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSP 198 (257)
T ss_pred HHHHHHccChhHHHHHHHHHHHhccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCC
Confidence 9999999999999999999999999999999999999999999999999999887654
No 115
>PLN02789 farnesyltranstransferase
Probab=98.59 E-value=1.9e-05 Score=75.11 Aligned_cols=176 Identities=10% Similarity=0.033 Sum_probs=110.8
Q ss_pred HHHHHHHHhccC---CCChhhHHHHHHHHHHcCCH--HHHHHHHHHHHHCCCCCChHHHHHHHHHHhccCcHHHHHHHHH
Q 007573 355 ILDSELAFRQIH---SPNLVSWNTIIAAFAQHGHY--EKALIFFSQMGLNGFDPDGITFLSLLSACGHAGKVNESMDLFE 429 (597)
Q Consensus 355 ~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~--~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~ 429 (597)
+++++..++++. +.+..+|+.....+.+.|+. ++++++++++.+.. +-|..+|.....++...|+++++++.++
T Consensus 88 l~eeL~~~~~~i~~npknyqaW~~R~~~l~~l~~~~~~~el~~~~kal~~d-pkNy~AW~~R~w~l~~l~~~~eeL~~~~ 166 (320)
T PLN02789 88 LEEELDFAEDVAEDNPKNYQIWHHRRWLAEKLGPDAANKELEFTRKILSLD-AKNYHAWSHRQWVLRTLGGWEDELEYCH 166 (320)
T ss_pred HHHHHHHHHHHHHHCCcchHHhHHHHHHHHHcCchhhHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 455555554443 34444555544444444542 56677777776543 3345667766677777777788888777
Q ss_pred HhHHhcCCCCChHHHHHHHHHHhhc---CCH----HHHHHHHhhC-CCCC-CHHHHHHHHHHHHhc----CCHHHHHHHH
Q 007573 430 LMVKVYGIIPSSEHYTCLVDILSRA---GQL----EKAWQITQGM-PFEA-DTGVWGSLLAACVIN----LNVELGELAA 496 (597)
Q Consensus 430 ~~~~~~~~~p~~~~~~~l~~~~~~~---g~~----~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~----g~~~~a~~~~ 496 (597)
++++. + .-+...|+....++.+. |+. +++.++..++ ...| |...|+.+...+... +...+|...+
T Consensus 167 ~~I~~-d-~~N~sAW~~R~~vl~~~~~l~~~~~~~e~el~y~~~aI~~~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~ 244 (320)
T PLN02789 167 QLLEE-D-VRNNSAWNQRYFVITRSPLLGGLEAMRDSELKYTIDAILANPRNESPWRYLRGLFKDDKEALVSDPEVSSVC 244 (320)
T ss_pred HHHHH-C-CCchhHHHHHHHHHHhccccccccccHHHHHHHHHHHHHhCCCCcCHHHHHHHHHhcCCcccccchhHHHHH
Confidence 77764 2 22345555555554443 222 3556665443 3445 566888888887763 3456788899
Q ss_pred HHHHhcCCCCCchHHHHHHHHHhcC------------------CcHHHHHHHHHH
Q 007573 497 KKMRELDPQNSAVYVMLSNLYAAAG------------------MWRDVTRVRLLM 533 (597)
Q Consensus 497 ~~~~~~~p~~~~~~~~l~~~~~~~g------------------~~~~A~~~~~~~ 533 (597)
.++.+.+|+++.++..|+++|.... ..++|.++++.+
T Consensus 245 ~~~~~~~~~s~~al~~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~l 299 (320)
T PLN02789 245 LEVLSKDSNHVFALSDLLDLLCEGLQPTAEFRDTVDTLAEELSDSTLAQAVCSEL 299 (320)
T ss_pred HHhhcccCCcHHHHHHHHHHHHhhhccchhhhhhhhccccccccHHHHHHHHHHH
Confidence 9988889998999999999998743 236677777777
No 116
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.59 E-value=5.4e-06 Score=86.86 Aligned_cols=126 Identities=11% Similarity=0.015 Sum_probs=60.2
Q ss_pred hHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCC-hHHHHHHHHHHhhcCCHHHHHHHHhhCC-CCCC-HHHHHHHHH
Q 007573 405 GITFLSLLSACGHAGKVNESMDLFELMVKVYGIIPS-SEHYTCLVDILSRAGQLEKAWQITQGMP-FEAD-TGVWGSLLA 481 (597)
Q Consensus 405 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p~-~~~~~~l~~ 481 (597)
...+..|.....+.|.+++|..+++.+. .+.|+ ......++..+.+.+++++|...+++.. ..|+ ......+..
T Consensus 86 ~~~~~~La~i~~~~g~~~ea~~~l~~~~---~~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~~~~~~~~~a~ 162 (694)
T PRK15179 86 ELFQVLVARALEAAHRSDEGLAVWRGIH---QRFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSSSAREILLEAK 162 (694)
T ss_pred HHHHHHHHHHHHHcCCcHHHHHHHHHHH---hhCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCCCHHHHHHHHH
Confidence 4444444444455555555555555444 22343 3334444445555555555555544433 3333 223344444
Q ss_pred HHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCcHHHHHHHHHH
Q 007573 482 ACVINLNVELGELAAKKMRELDPQNSAVYVMLSNLYAAAGMWRDVTRVRLLM 533 (597)
Q Consensus 482 ~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 533 (597)
++.+.|++++|..+|++++..+|+++.++..++.++...|+.++|...|++.
T Consensus 163 ~l~~~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a 214 (694)
T PRK15179 163 SWDEIGQSEQADACFERLSRQHPEFENGYVGWAQSLTRRGALWRARDVLQAG 214 (694)
T ss_pred HHHHhcchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 4445555555555555555544444555555555555555555555555444
No 117
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.55 E-value=3.5e-05 Score=73.91 Aligned_cols=177 Identities=15% Similarity=0.053 Sum_probs=121.5
Q ss_pred CHHHHHHHHhccC------CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHhccCcHHHHHHH
Q 007573 354 GILDSELAFRQIH------SPNLVSWNTIIAAFAQHGHYEKALIFFSQMGLNGFDPDGITFLSLLSACGHAGKVNESMDL 427 (597)
Q Consensus 354 ~~~~A~~~~~~~~------~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~ 427 (597)
++.+++..-+.++ .++...+...+.+.........+-.++-+-.+. .-...-|.. .......|++++|+..
T Consensus 252 RIa~lr~ra~q~p~~~~~d~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~--~~~aa~YG~-A~~~~~~~~~d~A~~~ 328 (484)
T COG4783 252 RIADLRNRAEQSPPYNKLDSPDFQLARARIRAKYEALPNQQAADLLAKRSKR--GGLAAQYGR-ALQTYLAGQYDEALKL 328 (484)
T ss_pred HHHHHHHHHHhCCCCCCCCCccHHHHHHHHHHHhccccccchHHHHHHHhCc--cchHHHHHH-HHHHHHhcccchHHHH
Confidence 4555555555555 345555666655544333333333333222220 111222333 3344567888999999
Q ss_pred HHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHhhCC-CCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 007573 428 FELMVKVYGIIPSSEHYTCLVDILSRAGQLEKAWQITQGMP-FEAD-TGVWGSLLAACVINLNVELGELAAKKMRELDPQ 505 (597)
Q Consensus 428 ~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~ 505 (597)
++.+.+ ..+-|+.......+.+.+.++.++|.+.++++. ..|+ ...+..+..++.+.|++.+|+..+......+|+
T Consensus 329 l~~L~~--~~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~~~l~~~~a~all~~g~~~eai~~L~~~~~~~p~ 406 (484)
T COG4783 329 LQPLIA--AQPDNPYYLELAGDILLEANKAKEAIERLKKALALDPNSPLLQLNLAQALLKGGKPQEAIRILNRYLFNDPE 406 (484)
T ss_pred HHHHHH--hCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCccHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCC
Confidence 998876 344557777778889999999999999998876 6676 567788888899999999999999999999999
Q ss_pred CCchHHHHHHHHHhcCCcHHHHHHHHHHHh
Q 007573 506 NSAVYVMLSNLYAAAGMWRDVTRVRLLMKE 535 (597)
Q Consensus 506 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 535 (597)
++..|..|+.+|..+|+..+|...+.+...
T Consensus 407 dp~~w~~LAqay~~~g~~~~a~~A~AE~~~ 436 (484)
T COG4783 407 DPNGWDLLAQAYAELGNRAEALLARAEGYA 436 (484)
T ss_pred CchHHHHHHHHHHHhCchHHHHHHHHHHHH
Confidence 999999999999988888877777666543
No 118
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.55 E-value=5.5e-06 Score=80.67 Aligned_cols=255 Identities=16% Similarity=0.108 Sum_probs=167.7
Q ss_pred HHHHHhcCCHHHHHHHHhhcCCCC---hhHHHHHHHHHHHcCChhHHHHHHHHhHHCCCCCCH-HHHHHHHHHHhccchh
Q 007573 245 ITGFCKVGMLENARLLFERIQPKD---CVSFNAMIAGYAQNGVAEEALRLFSGMIKMDMQPDD-ATLVSVFTACSALQLL 320 (597)
Q Consensus 245 ~~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~~~~~ll~~~~~~~~~ 320 (597)
..-+.+.|++.+|.-.|+...+.| ...|-.|...-..+++-..|+..+++.++. .|+. .....|.-.|...|.-
T Consensus 292 G~~lm~nG~L~~A~LafEAAVkqdP~haeAW~~LG~~qaENE~E~~ai~AL~rcl~L--dP~NleaLmaLAVSytNeg~q 369 (579)
T KOG1125|consen 292 GCNLMKNGDLSEAALAFEAAVKQDPQHAEAWQKLGITQAENENEQNAISALRRCLEL--DPTNLEALMALAVSYTNEGLQ 369 (579)
T ss_pred HHHHHhcCCchHHHHHHHHHHhhChHHHHHHHHhhhHhhhccchHHHHHHHHHHHhc--CCccHHHHHHHHHHHhhhhhH
Confidence 344567777888887787766543 357777777777777777787777777763 4543 3344444455566665
Q ss_pred HHHHHHHHHHHHhCCCCcccHHHHHHHHHHhcCCHHHHHHHHhccCCCChhhHHHHHHHHHHcCCHHHHHHHHHHH-HHC
Q 007573 321 NEGRQSHVLVIRNGFEANVSVCNAVITMYSRCGGILDSELAFRQIHSPNLVSWNTIIAAFAQHGHYEKALIFFSQM-GLN 399 (597)
Q Consensus 321 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~ 399 (597)
..|...+..-+....+.- + ... ..++...-+. ..+..........++|-++ ...
T Consensus 370 ~~Al~~L~~Wi~~~p~y~---~-------l~~-------------a~~~~~~~~~--~s~~~~~~l~~i~~~fLeaa~~~ 424 (579)
T KOG1125|consen 370 NQALKMLDKWIRNKPKYV---H-------LVS-------------AGENEDFENT--KSFLDSSHLAHIQELFLEAARQL 424 (579)
T ss_pred HHHHHHHHHHHHhCccch---h-------ccc-------------cCccccccCC--cCCCCHHHHHHHHHHHHHHHHhC
Confidence 666666555544432110 0 000 0000000000 0111112233444555444 445
Q ss_pred CCCCChHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCC-hHHHHHHHHHHhhcCCHHHHHHHHhhCC-CCCCH-HHH
Q 007573 400 GFDPDGITFLSLLSACGHAGKVNESMDLFELMVKVYGIIPS-SEHYTCLVDILSRAGQLEKAWQITQGMP-FEADT-GVW 476 (597)
Q Consensus 400 g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p~~-~~~ 476 (597)
+..+|+.....|.-.|--.|++++|...|+.+.. ++|+ ...|+.|.-.++...+.++|...|++.. ++|.- .++
T Consensus 425 ~~~~DpdvQ~~LGVLy~ls~efdraiDcf~~AL~---v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~yVR~R 501 (579)
T KOG1125|consen 425 PTKIDPDVQSGLGVLYNLSGEFDRAVDCFEAALQ---VKPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPGYVRVR 501 (579)
T ss_pred CCCCChhHHhhhHHHHhcchHHHHHHHHHHHHHh---cCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCeeeee
Confidence 5457788888888888899999999999999885 4565 7789999999999999999999999876 78874 488
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhcCCCC----------CchHHHHHHHHHhcCCcHHHHHH
Q 007573 477 GSLLAACVINLNVELGELAAKKMRELDPQN----------SAVYVMLSNLYAAAGMWRDVTRV 529 (597)
Q Consensus 477 ~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~----------~~~~~~l~~~~~~~g~~~~A~~~ 529 (597)
..|+-+|...|.+++|...|-.++.+.+.. ..++..|=.++...++.|-+.+.
T Consensus 502 yNlgIS~mNlG~ykEA~~hlL~AL~mq~ks~~~~~~~~~se~iw~tLR~als~~~~~D~l~~a 564 (579)
T KOG1125|consen 502 YNLGISCMNLGAYKEAVKHLLEALSMQRKSRNHNKAPMASENIWQTLRLALSAMNRSDLLQEA 564 (579)
T ss_pred hhhhhhhhhhhhHHHHHHHHHHHHHhhhcccccccCCcchHHHHHHHHHHHHHcCCchHHHHh
Confidence 889999999999999999999999876551 13566666667777776644443
No 119
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.53 E-value=9.1e-06 Score=71.87 Aligned_cols=154 Identities=12% Similarity=0.105 Sum_probs=115.2
Q ss_pred HHHHHhcCCHHHHHHHHhccCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHhccCcHHHHH
Q 007573 346 ITMYSRCGGILDSELAFRQIHSPNLVSWNTIIAAFAQHGHYEKALIFFSQMGLNGFDPDGITFLSLLSACGHAGKVNESM 425 (597)
Q Consensus 346 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~ 425 (597)
+-.|...|+++.+....+.+..+. . .+...++.++++..+++..+.. +.|...|..+...+...|++++|.
T Consensus 23 ~~~Y~~~g~~~~v~~~~~~~~~~~-~-------~~~~~~~~~~~i~~l~~~L~~~-P~~~~~w~~Lg~~~~~~g~~~~A~ 93 (198)
T PRK10370 23 VGSYLLSPKWQAVRAEYQRLADPL-H-------QFASQQTPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWRNDYDNAL 93 (198)
T ss_pred HHHHHHcchHHHHHHHHHHHhCcc-c-------cccCchhHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHH
Confidence 456777777777655544332221 0 1122566788888888877653 556778888889999999999999
Q ss_pred HHHHHhHHhcCCCCChHHHHHHHHHH-hhcCC--HHHHHHHHhhCC-CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 007573 426 DLFELMVKVYGIIPSSEHYTCLVDIL-SRAGQ--LEKAWQITQGMP-FEA-DTGVWGSLLAACVINLNVELGELAAKKMR 500 (597)
Q Consensus 426 ~~~~~~~~~~~~~p~~~~~~~l~~~~-~~~g~--~~~A~~~~~~~~-~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 500 (597)
..|+...+. .+.+...+..+..++ ...|+ .++|.+++++.. ..| +...+..+...+...|++++|+..+++++
T Consensus 94 ~a~~~Al~l--~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL 171 (198)
T PRK10370 94 LAYRQALQL--RGENAELYAALATVLYYQAGQHMTPQTREMIDKALALDANEVTALMLLASDAFMQADYAQAIELWQKVL 171 (198)
T ss_pred HHHHHHHHh--CCCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 999988753 233577888888864 67777 599999999876 555 56788888899999999999999999999
Q ss_pred hcCCCCCchH
Q 007573 501 ELDPQNSAVY 510 (597)
Q Consensus 501 ~~~p~~~~~~ 510 (597)
++.|.+..-+
T Consensus 172 ~l~~~~~~r~ 181 (198)
T PRK10370 172 DLNSPRVNRT 181 (198)
T ss_pred hhCCCCccHH
Confidence 9998876544
No 120
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.52 E-value=5.7e-06 Score=82.70 Aligned_cols=209 Identities=13% Similarity=0.043 Sum_probs=150.7
Q ss_pred HHHHhccchhHHHHHHHHHHHHhCCCCcccHHHHHHHHHHhcCCHHHHHHHHhccC--CCChhhHHHHHHHHHHcCCHHH
Q 007573 311 FTACSALQLLNEGRQSHVLVIRNGFEANVSVCNAVITMYSRCGGILDSELAFRQIH--SPNLVSWNTIIAAFAQHGHYEK 388 (597)
Q Consensus 311 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~ 388 (597)
...+...|-...|..+++.. ..+..++.+|...|+..+|..+..+.. +|+...|..+.+......-+++
T Consensus 405 aell~slGitksAl~I~Erl---------emw~~vi~CY~~lg~~~kaeei~~q~lek~~d~~lyc~LGDv~~d~s~yEk 475 (777)
T KOG1128|consen 405 AELLLSLGITKSALVIFERL---------EMWDPVILCYLLLGQHGKAEEINRQELEKDPDPRLYCLLGDVLHDPSLYEK 475 (777)
T ss_pred HHHHHHcchHHHHHHHHHhH---------HHHHHHHHHHHHhcccchHHHHHHHHhcCCCcchhHHHhhhhccChHHHHH
Confidence 33444555566666655543 245566777777777777777765544 5666677777666665556677
Q ss_pred HHHHHHHHHHCCCCCChHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHhhCC
Q 007573 389 ALIFFSQMGLNGFDPDGITFLSLLSACGHAGKVNESMDLFELMVKVYGIIPSSEHYTCLVDILSRAGQLEKAWQITQGMP 468 (597)
Q Consensus 389 A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 468 (597)
|.++.+.-... .-..+.....+.++++++.+.|+.-.+.+ +....+|-.+..+..+.++++.|.+.|....
T Consensus 476 awElsn~~sar-------A~r~~~~~~~~~~~fs~~~~hle~sl~~n--plq~~~wf~~G~~ALqlek~q~av~aF~rcv 546 (777)
T KOG1128|consen 476 AWELSNYISAR-------AQRSLALLILSNKDFSEADKHLERSLEIN--PLQLGTWFGLGCAALQLEKEQAAVKAFHRCV 546 (777)
T ss_pred HHHHhhhhhHH-------HHHhhccccccchhHHHHHHHHHHHhhcC--ccchhHHHhccHHHHHHhhhHHHHHHHHHHh
Confidence 77776654321 11122222334678888888887765432 2235677778888889999999999998766
Q ss_pred -CCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCcHHHHHHHHHHHhCC
Q 007573 469 -FEAD-TGVWGSLLAACVINLNVELGELAAKKMRELDPQNSAVYVMLSNLYAAAGMWRDVTRVRLLMKEQG 537 (597)
Q Consensus 469 -~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 537 (597)
..|| ...||.+-.+|.+.|+-.+|...+.++++-+-++...+.+..-+..+-|.|++|++.+.++.+..
T Consensus 547 tL~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~~~w~iWENymlvsvdvge~eda~~A~~rll~~~ 617 (777)
T KOG1128|consen 547 TLEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCNYQHWQIWENYMLVSVDVGEFEDAIKAYHRLLDLR 617 (777)
T ss_pred hcCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCCCCCeeeechhhhhhhcccHHHHHHHHHHHHHhh
Confidence 6776 45899999999999999999999999999998888888888899999999999999999997643
No 121
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=98.50 E-value=0.0011 Score=64.57 Aligned_cols=121 Identities=10% Similarity=0.212 Sum_probs=82.9
Q ss_pred CCcchHHHHHHHHHhCCChhHHHHHHhhCCCC---CcchHHHHHHHHHcCCChHHHHHHHccCC--CCChhhHHHHHHHH
Q 007573 79 KDVITWNAIITGYWQNGFLQESKNLFQSMPVK---NIVSWNCMIAGCIDNDRIDDAFDYFQAMP--ERNTATYNAMISGF 153 (597)
Q Consensus 79 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~ll~~~~~~~~~~~A~~~~~~~~--~~~~~~~~~l~~~~ 153 (597)
-|+.+|+.||.-+-.+ .++++...++++..+ .+..|..-|..-.+..+++....+|.+.+ .-+...|...++--
T Consensus 18 ~di~sw~~lire~qt~-~~~~~R~~YEq~~~~FP~s~r~W~~yi~~El~skdfe~VEkLF~RCLvkvLnlDLW~lYl~YV 96 (656)
T KOG1914|consen 18 YDIDSWSQLIREAQTQ-PIDKVRETYEQLVNVFPSSPRAWKLYIERELASKDFESVEKLFSRCLVKVLNLDLWKLYLSYV 96 (656)
T ss_pred ccHHHHHHHHHHHccC-CHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhHhHHHHHHHHH
Confidence 3677999999977555 999999999999865 77889999999999999999999999988 45677777666533
Q ss_pred Hc-CCChHHHH----HHHc----c--CCCCCchhHHHHHHH---------HHhCCChhHHHHHHHhc
Q 007573 154 LK-HGRLEEAT----RLFE----Q--MPRRNVISYTAMLDG---------FMKKGEVDKARALSDYM 200 (597)
Q Consensus 154 ~~-~g~~~~A~----~~~~----~--~~~~~~~~~~~li~~---------~~~~g~~~~A~~~~~~m 200 (597)
.+ .|+...++ +.|+ + |.-.+...|+..+.. +..+.+++...++|.++
T Consensus 97 R~~~~~~~~~r~~m~qAy~f~l~kig~di~s~siW~eYi~FL~~vea~gk~ee~QRI~~vRriYqra 163 (656)
T KOG1914|consen 97 RETKGKLFGYREKMVQAYDFALEKIGMDIKSYSIWDEYINFLEGVEAVGKYEENQRITAVRRIYQRA 163 (656)
T ss_pred HHHccCcchHHHHHHHHHHHHHHHhccCcccchhHHHHHHHHHcccccccHHHHHHHHHHHHHHHHH
Confidence 32 23333221 1222 1 111233445555543 33345677778888887
No 122
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.49 E-value=4e-05 Score=67.00 Aligned_cols=167 Identities=15% Similarity=0.156 Sum_probs=119.9
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhccC---CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHhcc
Q 007573 342 CNAVITMYSRCGGILDSELAFRQIH---SPNLVSWNTIIAAFAQHGHYEKALIFFSQMGLNGFDPDGITFLSLLSACGHA 418 (597)
Q Consensus 342 ~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~ 418 (597)
+..++-+....|+.+.|..+++.+. +.+..+-..-...+-..|++++|+++++...+.. +.|.+++..-+...-..
T Consensus 55 ~EqV~IAAld~~~~~lAq~C~~~L~~~fp~S~RV~~lkam~lEa~~~~~~A~e~y~~lL~dd-pt~~v~~KRKlAilka~ 133 (289)
T KOG3060|consen 55 YEQVFIAALDTGRDDLAQKCINQLRDRFPGSKRVGKLKAMLLEATGNYKEAIEYYESLLEDD-PTDTVIRKRKLAILKAQ 133 (289)
T ss_pred HHHHHHHHHHhcchHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhchhhHHHHHHHHhccC-cchhHHHHHHHHHHHHc
Confidence 3334444555667777777776654 1111111111122344789999999999998775 55677777766667777
Q ss_pred CcHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHhhCC-CCC-CHHHHHHHHHHHHhcC---CHHHHH
Q 007573 419 GKVNESMDLFELMVKVYGIIPSSEHYTCLVDILSRAGQLEKAWQITQGMP-FEA-DTGVWGSLLAACVINL---NVELGE 493 (597)
Q Consensus 419 g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~l~~~~~~~g---~~~~a~ 493 (597)
|+.-+|++-+....+ .+..|.+.|.-+.+.|...|++++|.-.++++. ..| ++..+..+...+...| +.+.|.
T Consensus 134 GK~l~aIk~ln~YL~--~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~~P~n~l~f~rlae~~Yt~gg~eN~~~ar 211 (289)
T KOG3060|consen 134 GKNLEAIKELNEYLD--KFMNDQEAWHELAEIYLSEGDFEKAAFCLEELLLIQPFNPLYFQRLAEVLYTQGGAENLELAR 211 (289)
T ss_pred CCcHHHHHHHHHHHH--HhcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 887888888888877 567889999999999999999999999999987 666 4556677777744433 678899
Q ss_pred HHHHHHHhcCCCCCchHH
Q 007573 494 LAAKKMRELDPQNSAVYV 511 (597)
Q Consensus 494 ~~~~~~~~~~p~~~~~~~ 511 (597)
++|.+++++.|.+...+.
T Consensus 212 kyy~~alkl~~~~~ral~ 229 (289)
T KOG3060|consen 212 KYYERALKLNPKNLRALF 229 (289)
T ss_pred HHHHHHHHhChHhHHHHH
Confidence 999999999997654443
No 123
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.46 E-value=4.2e-05 Score=81.87 Aligned_cols=219 Identities=13% Similarity=0.107 Sum_probs=170.0
Q ss_pred CcchHHHHHHHHHcCCChHHHHHHHhhcCC-CCCC-----chHHHHHHHHHHhcCCHHHHHHHHhhcCCC-C-hhHHHHH
Q 007573 204 NVVSWTVMITGYVKNERFCEARELFYRMPD-YDKN-----VFVVTAMITGFCKVGMLENARLLFERIQPK-D-CVSFNAM 275 (597)
Q Consensus 204 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~-~~~~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~-~~~~~~l 275 (597)
....|...|.-..+.++.++|.++.++++. +.+. ..+|.+++++-..-|.-+...++|+++.+- | ...|..|
T Consensus 1457 SSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqycd~~~V~~~L 1536 (1710)
T KOG1070|consen 1457 SSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQYCDAYTVHLKL 1536 (1710)
T ss_pred cchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHhcchHHHHHHH
Confidence 346788888888899999999999998876 4332 347888888888888888889999988763 3 3578889
Q ss_pred HHHHHHcCChhHHHHHHHHhHHCCCCCCHHHHHHHHHHHhccchhHHHHHHHHHHHHhCCC-CcccHHHHHHHHHHhcCC
Q 007573 276 IAGYAQNGVAEEALRLFSGMIKMDMQPDDATLVSVFTACSALQLLNEGRQSHVLVIRNGFE-ANVSVCNAVITMYSRCGG 354 (597)
Q Consensus 276 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~ 354 (597)
...|.+.+..++|.++|+.|.+. +.-....|...+..+.+.++-+.|..++..+++.-.+ -........+.+-.+.|+
T Consensus 1537 ~~iy~k~ek~~~A~ell~~m~KK-F~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLEFk~GD 1615 (1710)
T KOG1070|consen 1537 LGIYEKSEKNDEADELLRLMLKK-FGQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLEFKYGD 1615 (1710)
T ss_pred HHHHHHhhcchhHHHHHHHHHHH-hcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHhhcCC
Confidence 99999999999999999999875 3456677888888888888889999998888876422 134556667777888999
Q ss_pred HHHHHHHHhccC---CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCChH--HHHHHHHHHhccCcHHH
Q 007573 355 ILDSELAFRQIH---SPNLVSWNTIIAAFAQHGHYEKALIFFSQMGLNGFDPDGI--TFLSLLSACGHAGKVNE 423 (597)
Q Consensus 355 ~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~--~~~~ll~~~~~~g~~~~ 423 (597)
.+.++.+|+... +.-...|+..|..-.++|+.+.+..+|++....++.|... .|...+..--+.|+-+.
T Consensus 1616 aeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kkmKfffKkwLeyEk~~Gde~~ 1689 (1710)
T KOG1070|consen 1616 AERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKKMKFFFKKWLEYEKSHGDEKN 1689 (1710)
T ss_pred chhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhHhHHHHHHHHHHHHhcCchhh
Confidence 999999999887 4456789999999999999999999999999988877633 44444444334444433
No 124
>PF12854 PPR_1: PPR repeat
Probab=98.45 E-value=3.4e-07 Score=54.24 Aligned_cols=32 Identities=28% Similarity=0.568 Sum_probs=21.3
Q ss_pred CCCCChHHHHHHHHHHhhcCCHHHHHHHHhhC
Q 007573 436 GIIPSSEHYTCLVDILSRAGQLEKAWQITQGM 467 (597)
Q Consensus 436 ~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 467 (597)
|+.||..+|++||++|++.|++++|.++|++|
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 56666666666666666666666666666665
No 125
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.44 E-value=2.1e-05 Score=72.54 Aligned_cols=180 Identities=9% Similarity=-0.048 Sum_probs=126.3
Q ss_pred CHHHHHHHHHHHhccchhHHHHHHHHHHHHhCCCCc---ccHHHHHHHHHHhcCCHHHHHHHHhccC--CC-Chh---hH
Q 007573 303 DDATLVSVFTACSALQLLNEGRQSHVLVIRNGFEAN---VSVCNAVITMYSRCGGILDSELAFRQIH--SP-NLV---SW 373 (597)
Q Consensus 303 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~-~~~---~~ 373 (597)
....+......+...|+++.|...++.+.+... .+ ...+..+..+|.+.|++++|...++.+. .| +.. ++
T Consensus 32 ~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p-~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~ 110 (235)
T TIGR03302 32 PAEELYEEAKEALDSGDYTEAIKYFEALESRYP-FSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYAY 110 (235)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHHH
Confidence 455667777788899999999999999987652 22 2466778899999999999999999886 22 222 45
Q ss_pred HHHHHHHHHc--------CCHHHHHHHHHHHHHCCCCCChH-HHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChHHH
Q 007573 374 NTIIAAFAQH--------GHYEKALIFFSQMGLNGFDPDGI-TFLSLLSACGHAGKVNESMDLFELMVKVYGIIPSSEHY 444 (597)
Q Consensus 374 ~~li~~~~~~--------g~~~~A~~~~~~m~~~g~~p~~~-~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~ 444 (597)
..+..++... |++++|.+.|+++... .|+.. ....+.... . .. ... . ...
T Consensus 111 ~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~a~~~~~-~---~~------~~~-~--------~~~ 169 (235)
T TIGR03302 111 YLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRR--YPNSEYAPDAKKRMD-Y---LR------NRL-A--------GKE 169 (235)
T ss_pred HHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHH--CCCChhHHHHHHHHH-H---HH------HHH-H--------HHH
Confidence 5555666654 7889999999999875 45532 222111110 0 00 000 0 112
Q ss_pred HHHHHHHhhcCCHHHHHHHHhhCC-C---CC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC
Q 007573 445 TCLVDILSRAGQLEKAWQITQGMP-F---EA-DTGVWGSLLAACVINLNVELGELAAKKMRELDP 504 (597)
Q Consensus 445 ~~l~~~~~~~g~~~~A~~~~~~~~-~---~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p 504 (597)
..+...|.+.|++++|...+++.. . .| ....+..++.++...|++++|...++.+....|
T Consensus 170 ~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~~~ 234 (235)
T TIGR03302 170 LYVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGANYP 234 (235)
T ss_pred HHHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 356677889999999999888765 2 23 246888999999999999999998888876655
No 126
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.42 E-value=4.3e-06 Score=69.50 Aligned_cols=97 Identities=21% Similarity=0.220 Sum_probs=74.1
Q ss_pred hHHHHHHHHHHhhcCCHHHHHHHHhhCC-CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHH
Q 007573 441 SEHYTCLVDILSRAGQLEKAWQITQGMP-FEA-DTGVWGSLLAACVINLNVELGELAAKKMRELDPQNSAVYVMLSNLYA 518 (597)
Q Consensus 441 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 518 (597)
......++..+...|++++|.+.++.+. ..| +...|..+...+...|++++|...++++++.+|+++..+..++.+|.
T Consensus 17 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~ 96 (135)
T TIGR02552 17 LEQIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPDDPRPYFHAAECLL 96 (135)
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHH
Confidence 3445566677777788888887777754 334 56677777778888888888888888888888888888888888888
Q ss_pred hcCCcHHHHHHHHHHHhCC
Q 007573 519 AAGMWRDVTRVRLLMKEQG 537 (597)
Q Consensus 519 ~~g~~~~A~~~~~~~~~~~ 537 (597)
..|++++|.+.++...+..
T Consensus 97 ~~g~~~~A~~~~~~al~~~ 115 (135)
T TIGR02552 97 ALGEPESALKALDLAIEIC 115 (135)
T ss_pred HcCCHHHHHHHHHHHHHhc
Confidence 8888888888888776643
No 127
>PLN02789 farnesyltranstransferase
Probab=98.42 E-value=4.7e-05 Score=72.41 Aligned_cols=186 Identities=10% Similarity=0.078 Sum_probs=135.9
Q ss_pred HHhcCCHHHHHHHHhccC---CCChhhHHHHHHHHHHcC-CHHHHHHHHHHHHHCCCCCChHHHHHHHHHHhccCc--HH
Q 007573 349 YSRCGGILDSELAFRQIH---SPNLVSWNTIIAAFAQHG-HYEKALIFFSQMGLNGFDPDGITFLSLLSACGHAGK--VN 422 (597)
Q Consensus 349 ~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g-~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~--~~ 422 (597)
+...++.++|.....++. +.+..+|+.-...+...| ++++++..++++.+.. +-+..+|+.-...+.+.|. .+
T Consensus 47 l~~~e~serAL~lt~~aI~lnP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~n-pknyqaW~~R~~~l~~l~~~~~~ 125 (320)
T PLN02789 47 YASDERSPRALDLTADVIRLNPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDN-PKNYQIWHHRRWLAEKLGPDAAN 125 (320)
T ss_pred HHcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHC-CcchHHhHHHHHHHHHcCchhhH
Confidence 334467777877777766 344557776666677777 5799999999998763 3334556655555555665 36
Q ss_pred HHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHhhCC-CCC-CHHHHHHHHHHHHhc---CC----HHHHH
Q 007573 423 ESMDLFELMVKVYGIIPSSEHYTCLVDILSRAGQLEKAWQITQGMP-FEA-DTGVWGSLLAACVIN---LN----VELGE 493 (597)
Q Consensus 423 ~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~l~~~~~~~---g~----~~~a~ 493 (597)
++..+++.+.+. -+-+...|.....++.+.|++++|++.++++. ..| +..+|+......... |. .+.++
T Consensus 126 ~el~~~~kal~~--dpkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~N~sAW~~R~~vl~~~~~l~~~~~~~e~el 203 (320)
T PLN02789 126 KELEFTRKILSL--DAKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVRNNSAWNQRYFVITRSPLLGGLEAMRDSEL 203 (320)
T ss_pred HHHHHHHHHHHh--CcccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCchhHHHHHHHHHHhccccccccccHHHHH
Confidence 778888888753 23457888888999999999999999999886 333 567888877666554 22 35788
Q ss_pred HHHHHHHhcCCCCCchHHHHHHHHHhc----CCcHHHHHHHHHHHhCC
Q 007573 494 LAAKKMRELDPQNSAVYVMLSNLYAAA----GMWRDVTRVRLLMKEQG 537 (597)
Q Consensus 494 ~~~~~~~~~~p~~~~~~~~l~~~~~~~----g~~~~A~~~~~~~~~~~ 537 (597)
.+..++++.+|++..++..+..++... ++..+|.+...+..+.+
T Consensus 204 ~y~~~aI~~~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~ 251 (320)
T PLN02789 204 KYTIDAILANPRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKD 251 (320)
T ss_pred HHHHHHHHhCCCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhccc
Confidence 888999999999999999999999883 45567888877765543
No 128
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.41 E-value=0.00034 Score=61.88 Aligned_cols=70 Identities=11% Similarity=0.042 Sum_probs=37.5
Q ss_pred CHHHHHHHHhhCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCcHH
Q 007573 456 QLEKAWQITQGMP--FEADTGVWGSLLAACVINLNVELGELAAKKMRELDPQNSAVYVMLSNLYAAAGMWRD 525 (597)
Q Consensus 456 ~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~ 525 (597)
+..+|.-+|++|. .+|+..+.+....++...|++++|..+++.++..++++|.++.+++-+-...|+-.+
T Consensus 188 k~qdAfyifeE~s~k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~dpetL~Nliv~a~~~Gkd~~ 259 (299)
T KOG3081|consen 188 KIQDAFYIFEELSEKTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAKDPETLANLIVLALHLGKDAE 259 (299)
T ss_pred hhhhHHHHHHHHhcccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCChH
Confidence 3444555555543 344555555555555555555555555555555555555555555555555555443
No 129
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.41 E-value=1.3e-05 Score=80.21 Aligned_cols=189 Identities=14% Similarity=0.105 Sum_probs=159.6
Q ss_pred CCCCcccHHHHHHHHHHhcCCHHHHHHHHhccCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCChHHHHHHHH
Q 007573 334 GFEANVSVCNAVITMYSRCGGILDSELAFRQIHSPNLVSWNTIIAAFAQHGHYEKALIFFSQMGLNGFDPDGITFLSLLS 413 (597)
Q Consensus 334 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~ 413 (597)
+.+|--..-..+...+...|-...|..+|+++. .|.-.|.+|+..|+..+|..+..+-.+ -+||+..|..+.+
T Consensus 393 ~lpp~Wq~q~~laell~slGitksAl~I~Erle-----mw~~vi~CY~~lg~~~kaeei~~q~le--k~~d~~lyc~LGD 465 (777)
T KOG1128|consen 393 HLPPIWQLQRLLAELLLSLGITKSALVIFERLE-----MWDPVILCYLLLGQHGKAEEINRQELE--KDPDPRLYCLLGD 465 (777)
T ss_pred CCCCcchHHHHHHHHHHHcchHHHHHHHHHhHH-----HHHHHHHHHHHhcccchHHHHHHHHhc--CCCcchhHHHhhh
Confidence 445666667778899999999999999998764 677889999999999999999988887 3899999999999
Q ss_pred HHhccCcHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHhhCC-CCC-CHHHHHHHHHHHHhcCCHHH
Q 007573 414 ACGHAGKVNESMDLFELMVKVYGIIPSSEHYTCLVDILSRAGQLEKAWQITQGMP-FEA-DTGVWGSLLAACVINLNVEL 491 (597)
Q Consensus 414 ~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~l~~~~~~~g~~~~ 491 (597)
......-+++|.++.+..... .-..+.....+.++++++.+.++.-. ..| ...+|-.++.+..+.++++.
T Consensus 466 v~~d~s~yEkawElsn~~sar--------A~r~~~~~~~~~~~fs~~~~hle~sl~~nplq~~~wf~~G~~ALqlek~q~ 537 (777)
T KOG1128|consen 466 VLHDPSLYEKAWELSNYISAR--------AQRSLALLILSNKDFSEADKHLERSLEINPLQLGTWFGLGCAALQLEKEQA 537 (777)
T ss_pred hccChHHHHHHHHHhhhhhHH--------HHHhhccccccchhHHHHHHHHHHHhhcCccchhHHHhccHHHHHHhhhHH
Confidence 888888899999998765432 22223333456899999999998643 444 56799999999999999999
Q ss_pred HHHHHHHHHhcCCCCCchHHHHHHHHHhcCCcHHHHHHHHHHHhCC
Q 007573 492 GELAAKKMRELDPQNSAVYVMLSNLYAAAGMWRDVTRVRLLMKEQG 537 (597)
Q Consensus 492 a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 537 (597)
|.+.|.....++|++...++++.-+|.+.|+..+|...+++..+.+
T Consensus 538 av~aF~rcvtL~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn 583 (777)
T KOG1128|consen 538 AVKAFHRCVTLEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCN 583 (777)
T ss_pred HHHHHHHHhhcCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcC
Confidence 9999999999999999999999999999999999999999998866
No 130
>PF12854 PPR_1: PPR repeat
Probab=98.38 E-value=4.9e-07 Score=53.59 Aligned_cols=32 Identities=38% Similarity=0.772 Sum_probs=23.2
Q ss_pred CCCCChHHHHHHHHHHhccCcHHHHHHHHHHh
Q 007573 400 GFDPDGITFLSLLSACGHAGKVNESMDLFELM 431 (597)
Q Consensus 400 g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~ 431 (597)
|+.||..||+.++.++++.|++++|.++|++|
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 56777777777777777777777777777765
No 131
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.30 E-value=0.00013 Score=76.75 Aligned_cols=137 Identities=9% Similarity=-0.003 Sum_probs=93.1
Q ss_pred CChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC-hHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCC-hHHHH
Q 007573 368 PNLVSWNTIIAAFAQHGHYEKALIFFSQMGLNGFDPD-GITFLSLLSACGHAGKVNESMDLFELMVKVYGIIPS-SEHYT 445 (597)
Q Consensus 368 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~ 445 (597)
.++..+-.|.....+.|++++|..+++...+. .|| ......+...+.+.+++++|+...++... ..|+ .....
T Consensus 84 ~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~--~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~---~~p~~~~~~~ 158 (694)
T PRK15179 84 HTELFQVLVARALEAAHRSDEGLAVWRGIHQR--FPDSSEAFILMLRGVKRQQGIEAGRAEIELYFS---GGSSSAREIL 158 (694)
T ss_pred ccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhh--CCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhh---cCCCCHHHHH
Confidence 34566666777777777777777777777664 555 34556666777777777777777777664 2343 55666
Q ss_pred HHHHHHhhcCCHHHHHHHHhhCC-CCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCch
Q 007573 446 CLVDILSRAGQLEKAWQITQGMP-FEAD-TGVWGSLLAACVINLNVELGELAAKKMRELDPQNSAV 509 (597)
Q Consensus 446 ~l~~~~~~~g~~~~A~~~~~~~~-~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~ 509 (597)
.+..++...|++++|..+|+++. ..|+ ..++.++..++...|+.++|...|+++++...+-...
T Consensus 159 ~~a~~l~~~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~~~~~~~ 224 (694)
T PRK15179 159 LEAKSWDEIGQSEQADACFERLSRQHPEFENGYVGWAQSLTRRGALWRARDVLQAGLDAIGDGARK 224 (694)
T ss_pred HHHHHHHHhcchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCcchHH
Confidence 67777777777777777777765 3343 5677777777777777777777777777664433333
No 132
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.29 E-value=0.0002 Score=76.20 Aligned_cols=148 Identities=11% Similarity=0.094 Sum_probs=75.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHhccC---CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHhc
Q 007573 341 VCNAVITMYSRCGGILDSELAFRQIH---SPNLVSWNTIIAAFAQHGHYEKALIFFSQMGLNGFDPDGITFLSLLSACGH 417 (597)
Q Consensus 341 ~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~ 417 (597)
.+..+..+|-+.|+.++|..+++++. +.|+.+.|.+...|... +.++|.+++.+.... +..
T Consensus 118 Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~n~~aLNn~AY~~ae~-dL~KA~~m~~KAV~~---------------~i~ 181 (906)
T PRK14720 118 ALRTLAEAYAKLNENKKLKGVWERLVKADRDNPEIVKKLATSYEEE-DKEKAITYLKKAIYR---------------FIK 181 (906)
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHh-hHHHHHHHHHHHHHH---------------HHh
Confidence 44445555555555555555555554 33445555555555555 556666555554432 333
Q ss_pred cCcHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 007573 418 AGKVNESMDLFELMVKVYGIIPSSEHYTCLVDILSRAGQLEKAWQITQGMPFEADTGVWGSLLAACVINLNVELGELAAK 497 (597)
Q Consensus 418 ~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~ 497 (597)
.+++..+.++|.++... .+.+...+..+.......-. ..--..++.-+-..|...+++++++.+++
T Consensus 182 ~kq~~~~~e~W~k~~~~--~~~d~d~f~~i~~ki~~~~~------------~~~~~~~~~~l~~~y~~~~~~~~~i~iLK 247 (906)
T PRK14720 182 KKQYVGIEEIWSKLVHY--NSDDFDFFLRIERKVLGHRE------------FTRLVGLLEDLYEPYKALEDWDEVIYILK 247 (906)
T ss_pred hhcchHHHHHHHHHHhc--CcccchHHHHHHHHHHhhhc------------cchhHHHHHHHHHHHhhhhhhhHHHHHHH
Confidence 44555555555555531 11122222222211111100 11122344444555666677777777777
Q ss_pred HHHhcCCCCCchHHHHHHHHH
Q 007573 498 KMRELDPQNSAVYVMLSNLYA 518 (597)
Q Consensus 498 ~~~~~~p~~~~~~~~l~~~~~ 518 (597)
.+++.+|.|..+...++..|.
T Consensus 248 ~iL~~~~~n~~a~~~l~~~y~ 268 (906)
T PRK14720 248 KILEHDNKNNKAREELIRFYK 268 (906)
T ss_pred HHHhcCCcchhhHHHHHHHHH
Confidence 777777777666666666665
No 133
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.27 E-value=3e-05 Score=64.41 Aligned_cols=113 Identities=14% Similarity=0.042 Sum_probs=87.4
Q ss_pred HHHHHHHCCCCCC-hHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHhhCC-C
Q 007573 392 FFSQMGLNGFDPD-GITFLSLLSACGHAGKVNESMDLFELMVKVYGIIPSSEHYTCLVDILSRAGQLEKAWQITQGMP-F 469 (597)
Q Consensus 392 ~~~~m~~~g~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~ 469 (597)
++++.... .|+ ......+...+...|++++|.+.++.+... .+.+...+..+...+.+.|++++|..++++.. .
T Consensus 5 ~~~~~l~~--~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 80 (135)
T TIGR02552 5 TLKDLLGL--DSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAY--DPYNSRYWLGLAACCQMLKEYEEAIDAYALAAAL 80 (135)
T ss_pred hHHHHHcC--ChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 44555443 443 344566667788889999999999888763 23457788888899999999999999888764 3
Q ss_pred CC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCc
Q 007573 470 EA-DTGVWGSLLAACVINLNVELGELAAKKMRELDPQNSA 508 (597)
Q Consensus 470 ~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~ 508 (597)
.| +...+..+...+...|++++|...++++++.+|++..
T Consensus 81 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 120 (135)
T TIGR02552 81 DPDDPRPYFHAAECLLALGEPESALKALDLAIEICGENPE 120 (135)
T ss_pred CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccch
Confidence 44 5677888888899999999999999999999998765
No 134
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.22 E-value=2.6e-05 Score=75.67 Aligned_cols=122 Identities=16% Similarity=0.128 Sum_probs=94.1
Q ss_pred HHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHhhCC-CCC-CHHHHHHHHHHHHh
Q 007573 408 FLSLLSACGHAGKVNESMDLFELMVKVYGIIPSSEHYTCLVDILSRAGQLEKAWQITQGMP-FEA-DTGVWGSLLAACVI 485 (597)
Q Consensus 408 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~l~~~~~~ 485 (597)
...++..+...++++.|.++++++.+. .|+ ....++..+...++-.+|.+++++.. ..| +...+......|..
T Consensus 172 v~~Ll~~l~~t~~~~~ai~lle~L~~~---~pe--v~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~fLl~ 246 (395)
T PF09295_consen 172 VDTLLKYLSLTQRYDEAIELLEKLRER---DPE--VAVLLARVYLLMNEEVEAIRLLNEALKENPQDSELLNLQAEFLLS 246 (395)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHHhc---CCc--HHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHh
Confidence 344555666677778888888877654 243 44456777777777778887777655 333 55666666777889
Q ss_pred cCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCcHHHHHHHHHHH
Q 007573 486 NLNVELGELAAKKMRELDPQNSAVYVMLSNLYAAAGMWRDVTRVRLLMK 534 (597)
Q Consensus 486 ~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 534 (597)
.++++.|+.+.+++.+..|.+..+|..|+.+|...|++++|+-.+..+.
T Consensus 247 k~~~~lAL~iAk~av~lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~P 295 (395)
T PF09295_consen 247 KKKYELALEIAKKAVELSPSEFETWYQLAECYIQLGDFENALLALNSCP 295 (395)
T ss_pred cCCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence 9999999999999999999999999999999999999999999888875
No 135
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=98.19 E-value=0.013 Score=61.05 Aligned_cols=401 Identities=12% Similarity=0.114 Sum_probs=198.5
Q ss_pred cCCChHHHHHHHccCC--CCChhhHHHHHH--HHHcCCChHHHHHHHccCCC---CCchhHHHHHHHHHhCCChhHHHHH
Q 007573 124 DNDRIDDAFDYFQAMP--ERNTATYNAMIS--GFLKHGRLEEATRLFEQMPR---RNVISYTAMLDGFMKKGEVDKARAL 196 (597)
Q Consensus 124 ~~~~~~~A~~~~~~~~--~~~~~~~~~l~~--~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~ 196 (597)
..+++..|.+....+. -||. .|...+. .+.|.|+.++|..+++.... .|..|...+-.+|...|+.++|..+
T Consensus 21 d~~qfkkal~~~~kllkk~Pn~-~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~D~~tLq~l~~~y~d~~~~d~~~~~ 99 (932)
T KOG2053|consen 21 DSSQFKKALAKLGKLLKKHPNA-LYAKVLKALSLFRLGKGDEALKLLEALYGLKGTDDLTLQFLQNVYRDLGKLDEAVHL 99 (932)
T ss_pred hhHHHHHHHHHHHHHHHHCCCc-HHHHHHHHHHHHHhcCchhHHHHHhhhccCCCCchHHHHHHHHHHHHHhhhhHHHHH
Confidence 4556666666666655 2332 2222232 23477777777777766543 3566777777777777888888888
Q ss_pred HHhccc--CCcchHHHHHHHHHcCCChHH----HHHHHhhcCCCCCCchHHHHHHHHHHhcCC----------HHHHHHH
Q 007573 197 SDYMSF--KNVVSWTVMITGYVKNERFCE----ARELFYRMPDYDKNVFVVTAMITGFCKVGM----------LENARLL 260 (597)
Q Consensus 197 ~~~m~~--~~~~~~~~ll~~~~~~g~~~~----a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~----------~~~A~~~ 260 (597)
|++... |+..-...+..+|.+.+.+.+ |.+++... +.+...+-+++..+.+.-. +.-|.+.
T Consensus 100 Ye~~~~~~P~eell~~lFmayvR~~~yk~qQkaa~~LyK~~---pk~~yyfWsV~Slilqs~~~~~~~~~~i~l~LA~~m 176 (932)
T KOG2053|consen 100 YERANQKYPSEELLYHLFMAYVREKSYKKQQKAALQLYKNF---PKRAYYFWSVISLILQSIFSENELLDPILLALAEKM 176 (932)
T ss_pred HHHHHhhCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC---CcccchHHHHHHHHHHhccCCcccccchhHHHHHHH
Confidence 877744 444444555566666666554 33344322 2234444444444433211 2234444
Q ss_pred HhhcCCCC-h----hHHHHHHHHHHHcCChhHHHHHHHH-hHHCCCCCCHHHHHHHHHHHhccchhHHHHHHHHHHHHhC
Q 007573 261 FERIQPKD-C----VSFNAMIAGYAQNGVAEEALRLFSG-MIKMDMQPDDATLVSVFTACSALQLLNEGRQSHVLVIRNG 334 (597)
Q Consensus 261 ~~~~~~~~-~----~~~~~li~~~~~~g~~~~A~~~~~~-m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 334 (597)
++.+.+.+ . .-...-...+...|++++|+.++.. ....-...+...-+.-+..+...+++.+..++-..+...|
T Consensus 177 ~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~Ll~k~ 256 (932)
T KOG2053|consen 177 VQKLLEKKGKIESEAEIILYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELSSRLLEKG 256 (932)
T ss_pred HHHHhccCCccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHHHHHHHhC
Confidence 44444332 1 1111222334456777777777733 2222222333444455556666777777777777777666
Q ss_pred CCCcccHHHHHHHHHHh----------------cCCHHHHHHHHhccCCC-ChhhHHHHHHHH---HHcCCHHHHHHHHH
Q 007573 335 FEANVSVCNAVITMYSR----------------CGGILDSELAFRQIHSP-NLVSWNTIIAAF---AQHGHYEKALIFFS 394 (597)
Q Consensus 335 ~~~~~~~~~~l~~~~~~----------------~g~~~~A~~~~~~~~~~-~~~~~~~li~~~---~~~g~~~~A~~~~~ 394 (597)
... |...++.+.+ .+..+...+..++.... ....|-+-+..+ ..-|+.+++.-.|-
T Consensus 257 ~Dd----y~~~~~sv~klLe~~~~~~a~~~~s~~~~l~~~~ek~~~~i~~~~Rgp~LA~lel~kr~~~~gd~ee~~~~y~ 332 (932)
T KOG2053|consen 257 NDD----YKIYTDSVFKLLELLNKEPAEAAHSLSKSLDECIEKAQKNIGSKSRGPYLARLELDKRYKLIGDSEEMLSYYF 332 (932)
T ss_pred Ccc----hHHHHHHHHHHHHhcccccchhhhhhhhhHHHHHHHHHHhhcccccCcHHHHHHHHHHhcccCChHHHHHHHH
Confidence 321 3333332221 11222222222222111 111222222222 23466666554442
Q ss_pred HHHHCCCCCChHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChH-------HHHHHHHHHhhcCC-----HHHHHH
Q 007573 395 QMGLNGFDPDGITFLSLLSACGHAGKVNESMDLFELMVKVYGIIPSSE-------HYTCLVDILSRAGQ-----LEKAWQ 462 (597)
Q Consensus 395 ~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~-------~~~~l~~~~~~~g~-----~~~A~~ 462 (597)
+- -|-.|- +..=+..|...=..+.-..++.... +..++.. -+.+.+....-.|. -+.-..
T Consensus 333 ~k--fg~kpc---c~~Dl~~yl~~l~~~q~~~l~~~l~---~~~~~~s~~~k~l~~h~c~l~~~rl~G~~~~l~ad~i~a 404 (932)
T KOG2053|consen 333 KK--FGDKPC---CAIDLNHYLGHLNIDQLKSLMSKLV---LADDDSSGDEKVLQQHLCVLLLLRLLGLYEKLPADSILA 404 (932)
T ss_pred HH--hCCCcH---hHhhHHHhhccCCHHHHHHHHHHhh---ccCCcchhhHHHHHHHHHHHHHHHHhhccccCChHHHHH
Confidence 22 222221 1111111211112222222322222 1111111 01111111122221 111122
Q ss_pred HHhhC--------C----CCCC---------HHHHHHHHHHHHhcCCH---HHHHHHHHHHHhcCCCCCchHHHHHHHHH
Q 007573 463 ITQGM--------P----FEAD---------TGVWGSLLAACVINLNV---ELGELAAKKMRELDPQNSAVYVMLSNLYA 518 (597)
Q Consensus 463 ~~~~~--------~----~~p~---------~~~~~~l~~~~~~~g~~---~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 518 (597)
++.+. . .-|. ..+.+.|+..|.+.++. -+|+-+++..+..+|.|..+-..++.+|.
T Consensus 405 ~~~kl~~~ye~gls~~K~ll~TE~~~g~~~llLav~~Lid~~rktnd~~~l~eaI~LLE~glt~s~hnf~~KLlLiriY~ 484 (932)
T KOG2053|consen 405 YVRKLKLTYEKGLSLSKDLLPTEYSFGDELLLLAVNHLIDLWRKTNDLTDLFEAITLLENGLTKSPHNFQTKLLLIRIYS 484 (932)
T ss_pred HHHHHHHHHhccccccccccccccccHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhhcCCccHHHHHHHHHHHH
Confidence 22111 0 0111 12456777888888774 57888899999999999999999999999
Q ss_pred hcCCcHHHHHHHHHHHhCCCcc
Q 007573 519 AAGMWRDVTRVRLLMKEQGVTK 540 (597)
Q Consensus 519 ~~g~~~~A~~~~~~~~~~~~~~ 540 (597)
-.|-+..|.+.|+.+.-+.+..
T Consensus 485 ~lGa~p~a~~~y~tLdIK~IQ~ 506 (932)
T KOG2053|consen 485 YLGAFPDAYELYKTLDIKNIQT 506 (932)
T ss_pred HhcCChhHHHHHHhcchHHhhh
Confidence 9999999999999987666644
No 136
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=98.18 E-value=6.1e-05 Score=63.23 Aligned_cols=114 Identities=13% Similarity=0.074 Sum_probs=66.1
Q ss_pred cCcHHHHHHHHHHhHHhcCCCC-ChHHHHHHHHHHhhcCCHHHHHHHHhhCC-CCCCH----HHHHHHHHHHHhcCCHHH
Q 007573 418 AGKVNESMDLFELMVKVYGIIP-SSEHYTCLVDILSRAGQLEKAWQITQGMP-FEADT----GVWGSLLAACVINLNVEL 491 (597)
Q Consensus 418 ~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p~~----~~~~~l~~~~~~~g~~~~ 491 (597)
.++...+...++.+.+.++-.| .....-.+...+...|++++|...|+.+. ..|+. .....|...+...|++++
T Consensus 24 ~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~d~ 103 (145)
T PF09976_consen 24 AGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQYDE 103 (145)
T ss_pred CCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHH
Confidence 5566666666666665422211 12233334566666677777777766654 22332 234445566677777777
Q ss_pred HHHHHHHHHhcCCCCCchHHHHHHHHHhcCCcHHHHHHHHH
Q 007573 492 GELAAKKMRELDPQNSAVYVMLSNLYAAAGMWRDVTRVRLL 532 (597)
Q Consensus 492 a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 532 (597)
|+..++.. ...+..+..+...+++|.+.|++++|+..|+.
T Consensus 104 Al~~L~~~-~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~ 143 (145)
T PF09976_consen 104 ALATLQQI-PDEAFKALAAELLGDIYLAQGDYDEARAAYQK 143 (145)
T ss_pred HHHHHHhc-cCcchHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 77777552 22222355666777777777777777777765
No 137
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.17 E-value=0.00029 Score=61.76 Aligned_cols=163 Identities=13% Similarity=0.121 Sum_probs=128.8
Q ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCChHHHHHH-HHHHhccCcHHHHHHHHHHhHHhcCCCCChHHHHHHHHH
Q 007573 372 SWNTIIAAFAQHGHYEKALIFFSQMGLNGFDPDGITFLSL-LSACGHAGKVNESMDLFELMVKVYGIIPSSEHYTCLVDI 450 (597)
Q Consensus 372 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l-l~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~ 450 (597)
.|..++-+....|+.+.|...++++...- |...-...+ ..-+...|.+++|.++++.+..+ -+-|..++-.=+-+
T Consensus 54 l~EqV~IAAld~~~~~lAq~C~~~L~~~f--p~S~RV~~lkam~lEa~~~~~~A~e~y~~lL~d--dpt~~v~~KRKlAi 129 (289)
T KOG3060|consen 54 LYEQVFIAALDTGRDDLAQKCINQLRDRF--PGSKRVGKLKAMLLEATGNYKEAIEYYESLLED--DPTDTVIRKRKLAI 129 (289)
T ss_pred HHHHHHHHHHHhcchHHHHHHHHHHHHhC--CCChhHHHHHHHHHHHhhchhhHHHHHHHHhcc--CcchhHHHHHHHHH
Confidence 45555666777899999999999998752 544332222 23345679999999999999875 24456677766777
Q ss_pred HhhcCCHHHHHHHHhhCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCC---cHH
Q 007573 451 LSRAGQLEKAWQITQGMP--FEADTGVWGSLLAACVINLNVELGELAAKKMRELDPQNSAVYVMLSNLYAAAGM---WRD 525 (597)
Q Consensus 451 ~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~---~~~ 525 (597)
.-..|+.-+|++-+.+.. +..|...|.-|...|...|++++|.-.+++++=.+|.++..+..+++++.-.|- .+-
T Consensus 130 lka~GK~l~aIk~ln~YL~~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~~P~n~l~f~rlae~~Yt~gg~eN~~~ 209 (289)
T KOG3060|consen 130 LKAQGKNLEAIKELNEYLDKFMNDQEAWHELAEIYLSEGDFEKAAFCLEELLLIQPFNPLYFQRLAEVLYTQGGAENLEL 209 (289)
T ss_pred HHHcCCcHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHH
Confidence 778888888888777655 667999999999999999999999999999999999999999999999888774 556
Q ss_pred HHHHHHHHHhCCC
Q 007573 526 VTRVRLLMKEQGV 538 (597)
Q Consensus 526 A~~~~~~~~~~~~ 538 (597)
|.++|.+..+...
T Consensus 210 arkyy~~alkl~~ 222 (289)
T KOG3060|consen 210 ARKYYERALKLNP 222 (289)
T ss_pred HHHHHHHHHHhCh
Confidence 8888888877554
No 138
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.12 E-value=0.00089 Score=71.41 Aligned_cols=146 Identities=13% Similarity=0.141 Sum_probs=79.0
Q ss_pred hHHHHHHHHHcCCChHHHHHHHhhcCCCCC-CchHHHHHHHHHHhcCCHHHHHHHHhhcCCCChhHHHHHHHHHHHcCCh
Q 007573 207 SWTVMITGYVKNERFCEARELFYRMPDYDK-NVFVVTAMITGFCKVGMLENARLLFERIQPKDCVSFNAMIAGYAQNGVA 285 (597)
Q Consensus 207 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~ 285 (597)
.+..++.+|-+.|+.+++..+++++.+.+| +..+.|.++..|... ++++|...+.+... .|...+++
T Consensus 118 Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~n~~aLNn~AY~~ae~-dL~KA~~m~~KAV~-----------~~i~~kq~ 185 (906)
T PRK14720 118 ALRTLAEAYAKLNENKKLKGVWERLVKADRDNPEIVKKLATSYEEE-DKEKAITYLKKAIY-----------RFIKKKQY 185 (906)
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHh-hHHHHHHHHHHHHH-----------HHHhhhcc
Confidence 455566666666666666666666666555 344556666666666 66666665554322 25555566
Q ss_pred hHHHHHHHHhHHCCCCCCHHHHHHHHHHHhccchhHHHHHHHHHHHHh-CCCCcccHHHHHHHHHHhcCCHHHHHHHHhc
Q 007573 286 EEALRLFSGMIKMDMQPDDATLVSVFTACSALQLLNEGRQSHVLVIRN-GFEANVSVCNAVITMYSRCGGILDSELAFRQ 364 (597)
Q Consensus 286 ~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 364 (597)
..+.+++.++... .|+.. +.-.++.+.+... |..--..++-.+-..|....+++++..+++.
T Consensus 186 ~~~~e~W~k~~~~--~~~d~---------------d~f~~i~~ki~~~~~~~~~~~~~~~l~~~y~~~~~~~~~i~iLK~ 248 (906)
T PRK14720 186 VGIEEIWSKLVHY--NSDDF---------------DFFLRIERKVLGHREFTRLVGLLEDLYEPYKALEDWDEVIYILKK 248 (906)
T ss_pred hHHHHHHHHHHhc--Ccccc---------------hHHHHHHHHHHhhhccchhHHHHHHHHHHHhhhhhhhHHHHHHHH
Confidence 6666666666553 22222 2222222233222 2223344455556666667777777777776
Q ss_pred cC---CCChhhHHHHHHHHH
Q 007573 365 IH---SPNLVSWNTIIAAFA 381 (597)
Q Consensus 365 ~~---~~~~~~~~~li~~~~ 381 (597)
+. +.|.....-++..|.
T Consensus 249 iL~~~~~n~~a~~~l~~~y~ 268 (906)
T PRK14720 249 ILEHDNKNNKAREELIRFYK 268 (906)
T ss_pred HHhcCCcchhhHHHHHHHHH
Confidence 65 334445555555554
No 139
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.12 E-value=0.00062 Score=65.62 Aligned_cols=133 Identities=11% Similarity=0.072 Sum_probs=66.0
Q ss_pred hcCCHHHHHHHHhccC---CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC-hHHHHHHHHHHhccCcHHHHHH
Q 007573 351 RCGGILDSELAFRQIH---SPNLVSWNTIIAAFAQHGHYEKALIFFSQMGLNGFDPD-GITFLSLLSACGHAGKVNESMD 426 (597)
Q Consensus 351 ~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~g~~~~a~~ 426 (597)
..|+.++|+..++.+. +.|+..+......+...|+.++|.+.++++... .|+ ......+..++.+.|++.+|..
T Consensus 318 ~~~~~d~A~~~l~~L~~~~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l--~P~~~~l~~~~a~all~~g~~~eai~ 395 (484)
T COG4783 318 LAGQYDEALKLLQPLIAAQPDNPYYLELAGDILLEANKAKEAIERLKKALAL--DPNSPLLQLNLAQALLKGGKPQEAIR 395 (484)
T ss_pred HhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhc--CCCccHHHHHHHHHHHhcCChHHHHH
Confidence 3455555555555443 333444444445555555555555555555543 344 3333444455555555555555
Q ss_pred HHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 007573 427 LFELMVKVYGIIPSSEHYTCLVDILSRAGQLEKAWQITQGMPFEADTGVWGSLLAACVINLNVELGELAAKKMREL 502 (597)
Q Consensus 427 ~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 502 (597)
+++.... ..+-|+..|..|..+|...|+..+|..-. ...+.-.|+++.|+..+..+.+.
T Consensus 396 ~L~~~~~--~~p~dp~~w~~LAqay~~~g~~~~a~~A~---------------AE~~~~~G~~~~A~~~l~~A~~~ 454 (484)
T COG4783 396 ILNRYLF--NDPEDPNGWDLLAQAYAELGNRAEALLAR---------------AEGYALAGRLEQAIIFLMRASQQ 454 (484)
T ss_pred HHHHHhh--cCCCCchHHHHHHHHHHHhCchHHHHHHH---------------HHHHHhCCCHHHHHHHHHHHHHh
Confidence 5555543 33344555555555555555555443322 22334445555555555555544
No 140
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=98.09 E-value=3.6e-05 Score=59.11 Aligned_cols=93 Identities=19% Similarity=0.182 Sum_probs=75.5
Q ss_pred HHHHHHHHhhcCCHHHHHHHHhhCC-CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcC
Q 007573 444 YTCLVDILSRAGQLEKAWQITQGMP-FEA-DTGVWGSLLAACVINLNVELGELAAKKMRELDPQNSAVYVMLSNLYAAAG 521 (597)
Q Consensus 444 ~~~l~~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 521 (597)
+..++..+...|++++|.+.+++.. ..| +...+..+...+...|++++|...++++.+..|.++..+..++.++...|
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (100)
T cd00189 3 LLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKLG 82 (100)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHHH
Confidence 4556677778888888888887764 334 34667777888888899999999999999999988888889999999999
Q ss_pred CcHHHHHHHHHHHhC
Q 007573 522 MWRDVTRVRLLMKEQ 536 (597)
Q Consensus 522 ~~~~A~~~~~~~~~~ 536 (597)
++++|.+.++...+.
T Consensus 83 ~~~~a~~~~~~~~~~ 97 (100)
T cd00189 83 KYEEALEAYEKALEL 97 (100)
T ss_pred hHHHHHHHHHHHHcc
Confidence 999999998887653
No 141
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.09 E-value=0.0013 Score=58.21 Aligned_cols=247 Identities=12% Similarity=0.032 Sum_probs=151.0
Q ss_pred cCCHHHHHHHHhhcCC--CChhHHHHHHHHHHHcCChhHHHHHHHHhHHCCCCCCHHHHHHHHHHHhccchhHH-HHHHH
Q 007573 251 VGMLENARLLFERIQP--KDCVSFNAMIAGYAQNGVAEEALRLFSGMIKMDMQPDDATLVSVFTACSALQLLNE-GRQSH 327 (597)
Q Consensus 251 ~g~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~-a~~~~ 327 (597)
.|.+..++..-..... .++..-.-+-++|...|.+...+.-. .. |-.|....+..+-......++.+. ...+.
T Consensus 21 ~Gnyq~~ine~~~~~~~~~~~e~d~y~~raylAlg~~~~~~~eI---~~-~~~~~lqAvr~~a~~~~~e~~~~~~~~~l~ 96 (299)
T KOG3081|consen 21 LGNYQQCINEAEKFSSSKTDVELDVYMYRAYLALGQYQIVISEI---KE-GKATPLQAVRLLAEYLELESNKKSILASLY 96 (299)
T ss_pred hhHHHHHHHHHHhhccccchhHHHHHHHHHHHHccccccccccc---cc-ccCChHHHHHHHHHHhhCcchhHHHHHHHH
Confidence 4555555544433222 23334444555666666554433221 11 113333334333333333443332 22334
Q ss_pred HHHHHhCCCCcccHHHHHHHHHHhcCCHHHHHHHHhccCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCChHH
Q 007573 328 VLVIRNGFEANVSVCNAVITMYSRCGGILDSELAFRQIHSPNLVSWNTIIAAFAQHGHYEKALIFFSQMGLNGFDPDGIT 407 (597)
Q Consensus 328 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~ 407 (597)
+.+.......+......-...|...|++++|.+....... ......=+..+.+..+.+-|.+.+++|.+ --+..|
T Consensus 97 E~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~~~--lE~~Al~VqI~lk~~r~d~A~~~lk~mq~---ided~t 171 (299)
T KOG3081|consen 97 ELVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHLGEN--LEAAALNVQILLKMHRFDLAEKELKKMQQ---IDEDAT 171 (299)
T ss_pred HHHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhccch--HHHHHHHHHHHHHHHHHHHHHHHHHHHHc---cchHHH
Confidence 4444444444444444445667888888888888877443 33333334456677888999999999985 345667
Q ss_pred HHHHHHHHh----ccCcHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHhhCC--CCCCHHHHHHHHH
Q 007573 408 FLSLLSACG----HAGKVNESMDLFELMVKVYGIIPSSEHYTCLVDILSRAGQLEKAWQITQGMP--FEADTGVWGSLLA 481 (597)
Q Consensus 408 ~~~ll~~~~----~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~ 481 (597)
.+.|..++. ..+.+.+|.-+|+++.. ..+|++.+.+....+....|++++|..++++.. ...++.++..++.
T Consensus 172 LtQLA~awv~la~ggek~qdAfyifeE~s~--k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~dpetL~Nliv 249 (299)
T KOG3081|consen 172 LTQLAQAWVKLATGGEKIQDAFYIFEELSE--KTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAKDPETLANLIV 249 (299)
T ss_pred HHHHHHHHHHHhccchhhhhHHHHHHHHhc--ccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCCCHHHHHHHHH
Confidence 776666554 34578899999999975 567888888888888889999999999998876 3345667777776
Q ss_pred HHHhcCC-HHHHHHHHHHHHhcCCCCCc
Q 007573 482 ACVINLN-VELGELAAKKMRELDPQNSA 508 (597)
Q Consensus 482 ~~~~~g~-~~~a~~~~~~~~~~~p~~~~ 508 (597)
.-...|. .+-..+.+.+.....|..+.
T Consensus 250 ~a~~~Gkd~~~~~r~l~QLk~~~p~h~~ 277 (299)
T KOG3081|consen 250 LALHLGKDAEVTERNLSQLKLSHPEHPF 277 (299)
T ss_pred HHHHhCCChHHHHHHHHHHHhcCCcchH
Confidence 6555554 45566778888888887653
No 142
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=98.08 E-value=1.1e-05 Score=57.81 Aligned_cols=65 Identities=20% Similarity=0.165 Sum_probs=59.6
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcC-CcHHHHHHHHHHHhC
Q 007573 472 DTGVWGSLLAACVINLNVELGELAAKKMRELDPQNSAVYVMLSNLYAAAG-MWRDVTRVRLLMKEQ 536 (597)
Q Consensus 472 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~ 536 (597)
++.+|..++..+...|++++|+..|+++++.+|+++.++..++.+|...| ++++|++.+++..+.
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l 67 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKL 67 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHc
Confidence 46788899999999999999999999999999999999999999999999 799999999988764
No 143
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=98.08 E-value=0.00025 Score=59.53 Aligned_cols=125 Identities=20% Similarity=0.138 Sum_probs=85.5
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC---hHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCC--hHHHHHH
Q 007573 373 WNTIIAAFAQHGHYEKALIFFSQMGLNGFDPD---GITFLSLLSACGHAGKVNESMDLFELMVKVYGIIPS--SEHYTCL 447 (597)
Q Consensus 373 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~---~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~--~~~~~~l 447 (597)
|..++..+ ..++...+...++.+.... +.+ ......+...+...|++++|...|+.+... ...|+ ......|
T Consensus 15 y~~~~~~~-~~~~~~~~~~~~~~l~~~~-~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~-~~d~~l~~~a~l~L 91 (145)
T PF09976_consen 15 YEQALQAL-QAGDPAKAEAAAEQLAKDY-PSSPYAALAALQLAKAAYEQGDYDEAKAALEKALAN-APDPELKPLARLRL 91 (145)
T ss_pred HHHHHHHH-HCCCHHHHHHHHHHHHHHC-CCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhh-CCCHHHHHHHHHHH
Confidence 44444444 4778888888888887753 222 223344556777888888888888888775 32222 2344457
Q ss_pred HHHHhhcCCHHHHHHHHhhCCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 007573 448 VDILSRAGQLEKAWQITQGMPFE-ADTGVWGSLLAACVINLNVELGELAAKKMR 500 (597)
Q Consensus 448 ~~~~~~~g~~~~A~~~~~~~~~~-p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 500 (597)
...+...|++++|+..++..... .....+...+..+...|+.++|+..|++++
T Consensus 92 A~~~~~~~~~d~Al~~L~~~~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~Al 145 (145)
T PF09976_consen 92 ARILLQQGQYDEALATLQQIPDEAFKALAAELLGDIYLAQGDYDEARAAYQKAL 145 (145)
T ss_pred HHHHHHcCCHHHHHHHHHhccCcchHHHHHHHHHHHHHHCCCHHHHHHHHHHhC
Confidence 78888889999999988776522 234566677788889999999999888763
No 144
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=98.05 E-value=6.6e-05 Score=60.64 Aligned_cols=94 Identities=13% Similarity=-0.035 Sum_probs=57.4
Q ss_pred HHHHHHHHhhcCCHHHHHHHHhhCC-CCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC---CchHHHHHH
Q 007573 444 YTCLVDILSRAGQLEKAWQITQGMP-FEAD----TGVWGSLLAACVINLNVELGELAAKKMRELDPQN---SAVYVMLSN 515 (597)
Q Consensus 444 ~~~l~~~~~~~g~~~~A~~~~~~~~-~~p~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~---~~~~~~l~~ 515 (597)
+..++..+.+.|++++|.+.++++. ..|+ ...+..++.++...|++++|...++++++..|++ +.++..++.
T Consensus 5 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~ 84 (119)
T TIGR02795 5 YYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLGM 84 (119)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHHH
Confidence 3445555556666666666665553 2222 2344556666667777777777777777666654 345666677
Q ss_pred HHHhcCCcHHHHHHHHHHHhCC
Q 007573 516 LYAAAGMWRDVTRVRLLMKEQG 537 (597)
Q Consensus 516 ~~~~~g~~~~A~~~~~~~~~~~ 537 (597)
++...|++++|.+.++++.+..
T Consensus 85 ~~~~~~~~~~A~~~~~~~~~~~ 106 (119)
T TIGR02795 85 SLQELGDKEKAKATLQQVIKRY 106 (119)
T ss_pred HHHHhCChHHHHHHHHHHHHHC
Confidence 7777777777777777666543
No 145
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=98.05 E-value=0.013 Score=56.15 Aligned_cols=408 Identities=12% Similarity=0.117 Sum_probs=209.3
Q ss_pred HHhcCChHHHHHHHhhcCC---CCcc------hHHHHHHHHHhCCChhHHHHHHhhCCCC-CcchHHHHHHHH--HcCCC
Q 007573 60 LSRAGKISAARQLFDQMTT---KDVI------TWNAIITGYWQNGFLQESKNLFQSMPVK-NIVSWNCMIAGC--IDNDR 127 (597)
Q Consensus 60 ~~~~g~~~~A~~~~~~~~~---~~~~------~~~~li~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~ll~~~--~~~~~ 127 (597)
+-+.+++.+|.++|.++-+ .++. .-+.+|++|..+ +.+.....+....+. ....|..+..++ .+.+.
T Consensus 16 Lqkq~~~~esEkifskI~~e~~~~~f~lkeEvl~grilnAffl~-nld~Me~~l~~l~~~~~~s~~l~LF~~L~~Y~~k~ 94 (549)
T PF07079_consen 16 LQKQKKFQESEKIFSKIYDEKESSPFLLKEEVLGGRILNAFFLN-NLDLMEKQLMELRQQFGKSAYLPLFKALVAYKQKE 94 (549)
T ss_pred HHHHhhhhHHHHHHHHHHHHhhcchHHHHHHHHhhHHHHHHHHh-hHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhhh
Confidence 4578999999999998865 2222 245677887655 334333333333322 245566666554 47788
Q ss_pred hHHHHHHHccCCC------------------CChhhHHHHHHHHHcCCChHHHHHHHccCCC--------CCchhHHHHH
Q 007573 128 IDDAFDYFQAMPE------------------RNTATYNAMISGFLKHGRLEEATRLFEQMPR--------RNVISYTAML 181 (597)
Q Consensus 128 ~~~A~~~~~~~~~------------------~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--------~~~~~~~~li 181 (597)
+..|.+.+..... +|...-+..++.+...|++.+++.++++|.. -+..+|+.++
T Consensus 95 ~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~llkrE~~w~~d~yd~~v 174 (549)
T PF07079_consen 95 YRKALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFSEGRAILNRIIERLLKRECEWNSDMYDRAV 174 (549)
T ss_pred HHHHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhhhhhcccHHHHHHHH
Confidence 8888887765541 1223335567788889999999999988763 3677777754
Q ss_pred HHHHhC--------CChhHHHHHH-------HhcccCCc----------chHHHHHHHHHcC--CChHHHHHHHhhcCC-
Q 007573 182 DGFMKK--------GEVDKARALS-------DYMSFKNV----------VSWTVMITGYVKN--ERFCEARELFYRMPD- 233 (597)
Q Consensus 182 ~~~~~~--------g~~~~A~~~~-------~~m~~~~~----------~~~~~ll~~~~~~--g~~~~a~~~~~~~~~- 233 (597)
-.+.+. ...+-+.+.| ++|...|. .....++.-..-. .+..--.+++.....
T Consensus 175 lmlsrSYfLEl~e~~s~dl~pdyYemilfY~kki~~~d~~~Y~k~~peeeL~s~imqhlfi~p~e~l~~~mq~l~~We~~ 254 (549)
T PF07079_consen 175 LMLSRSYFLELKESMSSDLYPDYYEMILFYLKKIHAFDQRPYEKFIPEEELFSTIMQHLFIVPKERLPPLMQILENWENF 254 (549)
T ss_pred HHHhHHHHHHHHHhcccccChHHHHHHHHHHHHHHHHhhchHHhhCcHHHHHHHHHHHHHhCCHhhccHHHHHHHHHHhh
Confidence 444331 1222222222 22211122 1222222222111 111112222222222
Q ss_pred -CCCCch-HHHHHHHHHHhcCCHHHHHHHHhhcCC--------CChhHHHHHHHHHHHcCChhHHHHHHHHhHHCCCCCC
Q 007573 234 -YDKNVF-VVTAMITGFCKVGMLENARLLFERIQP--------KDCVSFNAMIAGYAQNGVAEEALRLFSGMIKMDMQPD 303 (597)
Q Consensus 234 -~~~~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~--------~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~ 303 (597)
..|+.. +...+..-+.+ +.+++..+.+.+.. .=+.++..++....+.++..+|.+.+.-+.- +.|+
T Consensus 255 yv~p~~~LVi~~L~~~f~~--~~e~~~~~ce~ia~~~i~~Lke~li~~F~~~Ls~~Vk~~~T~~a~q~l~lL~~--ldp~ 330 (549)
T PF07079_consen 255 YVHPNYDLVIEPLKQQFMS--DPEQVGHFCEAIASSKIEKLKEELIDRFGNLLSFKVKQVQTEEAKQYLALLKI--LDPR 330 (549)
T ss_pred ccCCchhHHHHHHHHHHhc--ChHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHh--cCCc
Confidence 334322 23344444433 44444444443322 2345788888888888888888887766554 2343
Q ss_pred HHHHHH-------HHHHHh-ccch---hHHHHHHHHHHHHhCCCCcccHHHHHH---HHHHhcCC-HHHHHHHHhccC--
Q 007573 304 DATLVS-------VFTACS-ALQL---LNEGRQSHVLVIRNGFEANVSVCNAVI---TMYSRCGG-ILDSELAFRQIH-- 366 (597)
Q Consensus 304 ~~~~~~-------ll~~~~-~~~~---~~~a~~~~~~~~~~~~~~~~~~~~~l~---~~~~~~g~-~~~A~~~~~~~~-- 366 (597)
...-.- +.+..+ .-.+ +..-..++..+...++.. .....-|+ .-+.+.|. -++|.++++.+.
T Consensus 331 ~svs~Kllls~~~lq~Iv~~DD~~~Tklr~yL~lwe~~qs~DiDr-qQLvh~L~~~Ak~lW~~g~~dekalnLLk~il~f 409 (549)
T PF07079_consen 331 ISVSEKLLLSPKVLQDIVCEDDESYTKLRDYLNLWEEIQSYDIDR-QQLVHYLVFGAKHLWEIGQCDEKALNLLKLILQF 409 (549)
T ss_pred chhhhhhhcCHHHHHHHHhcchHHHHHHHHHHHHHHHHHhhcccH-HHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHh
Confidence 321111 111111 1111 112222333333333211 11111222 22344454 677777777665
Q ss_pred -CCChhhHHHHH----HHHHH---cCCHHHHHHHHHHHHHCCCCCChH----HHHHHHH--HHhccCcHHHHHHHHHHhH
Q 007573 367 -SPNLVSWNTII----AAFAQ---HGHYEKALIFFSQMGLNGFDPDGI----TFLSLLS--ACGHAGKVNESMDLFELMV 432 (597)
Q Consensus 367 -~~~~~~~~~li----~~~~~---~g~~~~A~~~~~~m~~~g~~p~~~----~~~~ll~--~~~~~g~~~~a~~~~~~~~ 432 (597)
+-|...-|.+. ..|.+ .....+-+.+-+-..+.|++|-.+ .-+.+.. -+...|++.++.-.-..+.
T Consensus 410 t~yD~ec~n~v~~fvKq~Y~qaLs~~~~~rLlkLe~fi~e~gl~~i~i~e~eian~LaDAEyLysqgey~kc~~ys~WL~ 489 (549)
T PF07079_consen 410 TNYDIECENIVFLFVKQAYKQALSMHAIPRLLKLEDFITEVGLTPITISEEEIANFLADAEYLYSQGEYHKCYLYSSWLT 489 (549)
T ss_pred ccccHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCCcccccHHHHHHHHHHHHHHHhcccHHHHHHHHHHHH
Confidence 34444333322 12221 223344444444455667766432 2233332 2345677777766555444
Q ss_pred HhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHhhCCCCCCHHHHHH
Q 007573 433 KVYGIIPSSEHYTCLVDILSRAGQLEKAWQITQGMPFEADTGVWGS 478 (597)
Q Consensus 433 ~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ 478 (597)
.+.|++.+|..+.-.+....++++|..++..++ |+..++++
T Consensus 490 ---~iaPS~~~~RLlGl~l~e~k~Y~eA~~~l~~LP--~n~~~~ds 530 (549)
T PF07079_consen 490 ---KIAPSPQAYRLLGLCLMENKRYQEAWEYLQKLP--PNERMRDS 530 (549)
T ss_pred ---HhCCcHHHHHHHHHHHHHHhhHHHHHHHHHhCC--CchhhHHH
Confidence 567888888888888888888888888888876 56666554
No 146
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.05 E-value=4.1e-05 Score=68.92 Aligned_cols=90 Identities=22% Similarity=0.229 Sum_probs=42.9
Q ss_pred HhccCcHHHHHHHHHHhHHhcCCCC-ChHHHHHHHHHHhhcCCHHHHHHHHhhCC-CCCC-HHHHHHHHHHHHhcCCHHH
Q 007573 415 CGHAGKVNESMDLFELMVKVYGIIP-SSEHYTCLVDILSRAGQLEKAWQITQGMP-FEAD-TGVWGSLLAACVINLNVEL 491 (597)
Q Consensus 415 ~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p~-~~~~~~l~~~~~~~g~~~~ 491 (597)
+.+.+++.+|+..|.++++ +.| |...|..=..+|.+.|.++.|.+-.+... +.|. ..+|..|..+|...|++++
T Consensus 91 ~m~~~~Y~eAv~kY~~AI~---l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~~~gk~~~ 167 (304)
T KOG0553|consen 91 LMKNKDYQEAVDKYTEAIE---LDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYLALGKYEE 167 (304)
T ss_pred HHHhhhHHHHHHHHHHHHh---cCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHHccCcHHH
Confidence 3444555555555555542 223 23344444445555555555554444433 3333 2245555555555555555
Q ss_pred HHHHHHHHHhcCCCCC
Q 007573 492 GELAAKKMRELDPQNS 507 (597)
Q Consensus 492 a~~~~~~~~~~~p~~~ 507 (597)
|++.|+++++++|++.
T Consensus 168 A~~aykKaLeldP~Ne 183 (304)
T KOG0553|consen 168 AIEAYKKALELDPDNE 183 (304)
T ss_pred HHHHHHhhhccCCCcH
Confidence 5555555555555544
No 147
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=98.05 E-value=9.3e-06 Score=48.92 Aligned_cols=35 Identities=37% Similarity=0.644 Sum_probs=30.8
Q ss_pred hhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCh
Q 007573 371 VSWNTIIAAFAQHGHYEKALIFFSQMGLNGFDPDG 405 (597)
Q Consensus 371 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~ 405 (597)
.+||++|.+|++.|++++|.++|++|.+.|+.||.
T Consensus 1 ~~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~~ 35 (35)
T TIGR00756 1 VTYNTLIDGLCKAGRVEEALELFKEMLERGIEPDV 35 (35)
T ss_pred CcHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCC
Confidence 36899999999999999999999999999988873
No 148
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.03 E-value=0.0002 Score=69.57 Aligned_cols=123 Identities=11% Similarity=0.075 Sum_probs=93.6
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhccCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHhccCcH
Q 007573 342 CNAVITMYSRCGGILDSELAFRQIHSPNLVSWNTIIAAFAQHGHYEKALIFFSQMGLNGFDPDGITFLSLLSACGHAGKV 421 (597)
Q Consensus 342 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~ 421 (597)
...|+..+...++++.|+.+|+++...++.....++..+...++..+|++++++..+.. +-+......-...|.+.++.
T Consensus 172 v~~Ll~~l~~t~~~~~ai~lle~L~~~~pev~~~LA~v~l~~~~E~~AI~ll~~aL~~~-p~d~~LL~~Qa~fLl~k~~~ 250 (395)
T PF09295_consen 172 VDTLLKYLSLTQRYDEAIELLEKLRERDPEVAVLLARVYLLMNEEVEAIRLLNEALKEN-PQDSELLNLQAEFLLSKKKY 250 (395)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHHhcCCcHHHHHHHHHHhcCcHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCCH
Confidence 34455556667888888888888886666667777888888888888888888888642 33455555556677888888
Q ss_pred HHHHHHHHHhHHhcCCCCC-hHHHHHHHHHHhhcCCHHHHHHHHhhCC
Q 007573 422 NESMDLFELMVKVYGIIPS-SEHYTCLVDILSRAGQLEKAWQITQGMP 468 (597)
Q Consensus 422 ~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 468 (597)
+.|.++.+++.+ ..|+ ..+|..|+.+|...|++++|+..++.++
T Consensus 251 ~lAL~iAk~av~---lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~P 295 (395)
T PF09295_consen 251 ELALEIAKKAVE---LSPSEFETWYQLAECYIQLGDFENALLALNSCP 295 (395)
T ss_pred HHHHHHHHHHHH---hCchhHHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence 888888888874 3555 6688888888888888888888888887
No 149
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=98.01 E-value=0.00011 Score=71.82 Aligned_cols=98 Identities=13% Similarity=0.104 Sum_probs=48.5
Q ss_pred HHhccCcHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHhhCC-CCC-CHHHHHHHHHHHHhcCCHHH
Q 007573 414 ACGHAGKVNESMDLFELMVKVYGIIPSSEHYTCLVDILSRAGQLEKAWQITQGMP-FEA-DTGVWGSLLAACVINLNVEL 491 (597)
Q Consensus 414 ~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~l~~~~~~~g~~~~ 491 (597)
.+...|++++|.+.|+++++. -+-+...|..+..+|.+.|++++|+..++++. ..| +...|..++.+|...|++++
T Consensus 11 ~a~~~~~~~~Ai~~~~~Al~~--~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~lg~~~e 88 (356)
T PLN03088 11 EAFVDDDFALAVDLYTQAIDL--DPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLEEYQT 88 (356)
T ss_pred HHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCCHHH
Confidence 334455555555555555532 11224444555555555555555555555443 233 33345555555555555555
Q ss_pred HHHHHHHHHhcCCCCCchHHHH
Q 007573 492 GELAAKKMRELDPQNSAVYVML 513 (597)
Q Consensus 492 a~~~~~~~~~~~p~~~~~~~~l 513 (597)
|+..++++++++|+++.....+
T Consensus 89 A~~~~~~al~l~P~~~~~~~~l 110 (356)
T PLN03088 89 AKAALEKGASLAPGDSRFTKLI 110 (356)
T ss_pred HHHHHHHHHHhCCCCHHHHHHH
Confidence 5555555555555554443333
No 150
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=98.01 E-value=1e-05 Score=48.68 Aligned_cols=34 Identities=41% Similarity=0.798 Sum_probs=31.6
Q ss_pred hHHHHHHHHHHHcCChhHHHHHHHHhHHCCCCCC
Q 007573 270 VSFNAMIAGYAQNGVAEEALRLFSGMIKMDMQPD 303 (597)
Q Consensus 270 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~ 303 (597)
.+||.+|.+|++.|++++|.++|++|.+.|+.||
T Consensus 1 ~~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~ 34 (35)
T TIGR00756 1 VTYNTLIDGLCKAGRVEEALELFKEMLERGIEPD 34 (35)
T ss_pred CcHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 3799999999999999999999999999999987
No 151
>PRK15331 chaperone protein SicA; Provisional
Probab=98.01 E-value=0.00018 Score=59.38 Aligned_cols=100 Identities=11% Similarity=-0.046 Sum_probs=82.9
Q ss_pred CCCCC-hHHHHHHHHHHhhcCCHHHHHHHHhhCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHH
Q 007573 436 GIIPS-SEHYTCLVDILSRAGQLEKAWQITQGMP--FEADTGVWGSLLAACVINLNVELGELAAKKMRELDPQNSAVYVM 512 (597)
Q Consensus 436 ~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~ 512 (597)
|+.++ ....-....-+...|++++|..+|+-+. ..-+..-|..|..+|...+++++|+..|..+..++++||..+..
T Consensus 31 gis~~~le~iY~~Ay~~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~ 110 (165)
T PRK15331 31 GIPQDMMDGLYAHAYEFYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVFF 110 (165)
T ss_pred CCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccch
Confidence 44443 2223344555668999999999998765 33467788999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCcHHHHHHHHHHHh
Q 007573 513 LSNLYAAAGMWRDVTRVRLLMKE 535 (597)
Q Consensus 513 l~~~~~~~g~~~~A~~~~~~~~~ 535 (597)
.+.+|...|+.++|+..|+...+
T Consensus 111 agqC~l~l~~~~~A~~~f~~a~~ 133 (165)
T PRK15331 111 TGQCQLLMRKAAKARQCFELVNE 133 (165)
T ss_pred HHHHHHHhCCHHHHHHHHHHHHh
Confidence 99999999999999999998765
No 152
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=97.97 E-value=0.019 Score=54.98 Aligned_cols=80 Identities=16% Similarity=0.267 Sum_probs=67.5
Q ss_pred CCCcchHHHHHHHHHhcCChHHHHHHHhhcCCCCcc---hHHHHHHHHHhCCChhHHHHHHhhCCCC--CcchHHHHHHH
Q 007573 47 TQYVFVNNAKISALSRAGKISAARQLFDQMTTKDVI---TWNAIITGYWQNGFLQESKNLFQSMPVK--NIVSWNCMIAG 121 (597)
Q Consensus 47 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~---~~~~li~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~ll~~ 121 (597)
+.|+.+|-.||+-|...|..++-++++++|..|-++ +|..-+++-....+++....+|.+.... +...|...+.-
T Consensus 39 PtnI~S~fqLiq~~~tq~s~~~~re~yeq~~~pfp~~~~aw~ly~s~ELA~~df~svE~lf~rCL~k~l~ldLW~lYl~Y 118 (660)
T COG5107 39 PTNILSYFQLIQYLETQESMDAEREMYEQLSSPFPIMEHAWRLYMSGELARKDFRSVESLFGRCLKKSLNLDLWMLYLEY 118 (660)
T ss_pred chhHHHHHHHHHHHhhhhhHHHHHHHHHHhcCCCccccHHHHHHhcchhhhhhHHHHHHHHHHHHhhhccHhHHHHHHHH
Confidence 788999999999999999999999999999997654 7888888877888999999999998754 77777777765
Q ss_pred HHcCC
Q 007573 122 CIDND 126 (597)
Q Consensus 122 ~~~~~ 126 (597)
-.+-+
T Consensus 119 IRr~n 123 (660)
T COG5107 119 IRRVN 123 (660)
T ss_pred HHhhC
Confidence 54443
No 153
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=97.97 E-value=6e-06 Score=61.80 Aligned_cols=78 Identities=15% Similarity=0.181 Sum_probs=50.2
Q ss_pred cCCHHHHHHHHhhCC-CCC---CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCcHHHHHH
Q 007573 454 AGQLEKAWQITQGMP-FEA---DTGVWGSLLAACVINLNVELGELAAKKMRELDPQNSAVYVMLSNLYAAAGMWRDVTRV 529 (597)
Q Consensus 454 ~g~~~~A~~~~~~~~-~~p---~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~ 529 (597)
.|++++|+.+++++. ..| +...+..+..++.+.|++++|..++++ .+.+|.++.....++.++.+.|++++|++.
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~l~~y~eAi~~ 80 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNPDIHYLLARCLLKLGKYEEAIKA 80 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHHTT-HHHHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHhCCHHHHHHH
Confidence 355666666665554 222 334455567777777777777777777 666666656666667778888888888777
Q ss_pred HHH
Q 007573 530 RLL 532 (597)
Q Consensus 530 ~~~ 532 (597)
+++
T Consensus 81 l~~ 83 (84)
T PF12895_consen 81 LEK 83 (84)
T ss_dssp HHH
T ss_pred Hhc
Confidence 765
No 154
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=97.96 E-value=1.5e-05 Score=47.59 Aligned_cols=33 Identities=30% Similarity=0.585 Sum_probs=29.9
Q ss_pred hHHHHHHHHHHHcCChhHHHHHHHHhHHCCCCC
Q 007573 270 VSFNAMIAGYAQNGVAEEALRLFSGMIKMDMQP 302 (597)
Q Consensus 270 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 302 (597)
.+|+.++.+|.+.|+++.|.++|++|.+.|++|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 579999999999999999999999999998887
No 155
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=97.95 E-value=2.3e-05 Score=55.23 Aligned_cols=59 Identities=15% Similarity=0.130 Sum_probs=49.0
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCcHHHHHHHHHHHhCC
Q 007573 479 LLAACVINLNVELGELAAKKMRELDPQNSAVYVMLSNLYAAAGMWRDVTRVRLLMKEQG 537 (597)
Q Consensus 479 l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 537 (597)
+...+...|++++|+..++++++.+|+++.++..++.++...|++++|...++++.+..
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~ 61 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELD 61 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHS
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 45667788889999999999998888888888889999999999999998888887644
No 156
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=97.95 E-value=0.00017 Score=58.17 Aligned_cols=103 Identities=13% Similarity=0.046 Sum_probs=65.0
Q ss_pred HHHHHHHHhccCcHHHHHHHHHHhHHhcCCCC-ChHHHHHHHHHHhhcCCHHHHHHHHhhCC-CCCC----HHHHHHHHH
Q 007573 408 FLSLLSACGHAGKVNESMDLFELMVKVYGIIP-SSEHYTCLVDILSRAGQLEKAWQITQGMP-FEAD----TGVWGSLLA 481 (597)
Q Consensus 408 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p~----~~~~~~l~~ 481 (597)
+......+.+.|++++|.+.|..+.+.++-.+ ....+..+..++.+.|++++|.+.++.+. ..|+ ...+..+..
T Consensus 5 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~ 84 (119)
T TIGR02795 5 YYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLGM 84 (119)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHHH
Confidence 44445555566666666666666654321111 13345556666777777777777776654 2233 345667777
Q ss_pred HHHhcCCHHHHHHHHHHHHhcCCCCCchH
Q 007573 482 ACVINLNVELGELAAKKMRELDPQNSAVY 510 (597)
Q Consensus 482 ~~~~~g~~~~a~~~~~~~~~~~p~~~~~~ 510 (597)
++...|+.++|...++++++..|+++.+.
T Consensus 85 ~~~~~~~~~~A~~~~~~~~~~~p~~~~~~ 113 (119)
T TIGR02795 85 SLQELGDKEKAKATLQQVIKRYPGSSAAK 113 (119)
T ss_pred HHHHhCChHHHHHHHHHHHHHCcCChhHH
Confidence 78888888888888888888888876544
No 157
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=97.92 E-value=2.1e-05 Score=46.92 Aligned_cols=33 Identities=30% Similarity=0.561 Sum_probs=25.8
Q ss_pred hhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC
Q 007573 371 VSWNTIIAAFAQHGHYEKALIFFSQMGLNGFDP 403 (597)
Q Consensus 371 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 403 (597)
.+|+.++.+|++.|+++.|.++|++|.+.|++|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 467778888888888888888888888777776
No 158
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.90 E-value=0.00012 Score=65.99 Aligned_cols=99 Identities=16% Similarity=0.197 Sum_probs=80.5
Q ss_pred HHHHHcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCC-hHHHHHHHHHHhhcCC
Q 007573 378 AAFAQHGHYEKALIFFSQMGLNGFDPDGITFLSLLSACGHAGKVNESMDLFELMVKVYGIIPS-SEHYTCLVDILSRAGQ 456 (597)
Q Consensus 378 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~ 456 (597)
.-+.+.++|.+|+..|.+.++.. +-|.+.|..-..+|++.|.++.|++-.+..+ .+.|. ...|..|..+|...|+
T Consensus 89 N~~m~~~~Y~eAv~kY~~AI~l~-P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al---~iDp~yskay~RLG~A~~~~gk 164 (304)
T KOG0553|consen 89 NKLMKNKDYQEAVDKYTEAIELD-PTNAVYYCNRAAAYSKLGEYEDAVKDCESAL---SIDPHYSKAYGRLGLAYLALGK 164 (304)
T ss_pred HHHHHhhhHHHHHHHHHHHHhcC-CCcchHHHHHHHHHHHhcchHHHHHHHHHHH---hcChHHHHHHHHHHHHHHccCc
Confidence 34677899999999999999752 3456777777889999999999998887776 45565 7789999999999999
Q ss_pred HHHHHHHHhhCC-CCCCHHHHHHHH
Q 007573 457 LEKAWQITQGMP-FEADTGVWGSLL 480 (597)
Q Consensus 457 ~~~A~~~~~~~~-~~p~~~~~~~l~ 480 (597)
+++|++.|++.. +.|+..+|..=+
T Consensus 165 ~~~A~~aykKaLeldP~Ne~~K~nL 189 (304)
T KOG0553|consen 165 YEEAIEAYKKALELDPDNESYKSNL 189 (304)
T ss_pred HHHHHHHHHhhhccCCCcHHHHHHH
Confidence 999999998876 888877664433
No 159
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=97.90 E-value=0.036 Score=56.06 Aligned_cols=204 Identities=14% Similarity=0.174 Sum_probs=119.1
Q ss_pred hhHHHHHHhhCCCCCcchHHHHHHHHHcCCChHHHHHHHccCC-CCCh------------hhHHHHHHHHHcCCChHHHH
Q 007573 97 LQESKNLFQSMPVKNIVSWNCMIAGCIDNDRIDDAFDYFQAMP-ERNT------------ATYNAMISGFLKHGRLEEAT 163 (597)
Q Consensus 97 ~~~A~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~-~~~~------------~~~~~l~~~~~~~g~~~~A~ 163 (597)
.++|.+..+.- |.+..|..+.......-.++.|...|-+.. -+.. ....+ ..-+--|++++|.
T Consensus 679 ledA~qfiEdn--PHprLWrllAe~Al~Kl~l~tAE~AFVrc~dY~Gik~vkrl~~i~s~~~q~a--ei~~~~g~feeae 754 (1189)
T KOG2041|consen 679 LEDAIQFIEDN--PHPRLWRLLAEYALFKLALDTAEHAFVRCGDYAGIKLVKRLRTIHSKEQQRA--EISAFYGEFEEAE 754 (1189)
T ss_pred hHHHHHHHhcC--CchHHHHHHHHHHHHHHhhhhHhhhhhhhccccchhHHHHhhhhhhHHHHhH--hHhhhhcchhHhh
Confidence 34444444332 345556666655555555555555554443 1111 11111 1222348888899
Q ss_pred HHHccCCCCCchhHHHHHHHHHhCCChhHHHHHHHhcccC--C---cchHHHHHHHHHcCCChHHHHHHHhhcCCCCCCc
Q 007573 164 RLFEQMPRRNVISYTAMLDGFMKKGEVDKARALSDYMSFK--N---VVSWTVMITGYVKNERFCEARELFYRMPDYDKNV 238 (597)
Q Consensus 164 ~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--~---~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~ 238 (597)
+++-+|.++|.. |..+.+.|++-.+.++++.-... | ...++.+...++....+++|.+.|..-..
T Consensus 755 k~yld~drrDLA-----ielr~klgDwfrV~qL~r~g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~~~----- 824 (1189)
T KOG2041|consen 755 KLYLDADRRDLA-----IELRKKLGDWFRVYQLIRNGGSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSYCGD----- 824 (1189)
T ss_pred hhhhccchhhhh-----HHHHHhhhhHHHHHHHHHccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc-----
Confidence 888888777653 56667778888777777654222 1 25778888888888888888888876543
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHhhcCCCChhHHHHHHHHHHHcCChhHHHHHHHHhHHCCCCCCHHHHHHHHHHHhccc
Q 007573 239 FVVTAMITGFCKVGMLENARLLFERIQPKDCVSFNAMIAGYAQNGVAEEALRLFSGMIKMDMQPDDATLVSVFTACSALQ 318 (597)
Q Consensus 239 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~ 318 (597)
....+.++.+...+++-+.+-..+++ |....-.+...+.+.|.-++|.+.|-+-- .|. ..+..|...+
T Consensus 825 --~e~~~ecly~le~f~~LE~la~~Lpe-~s~llp~~a~mf~svGMC~qAV~a~Lr~s----~pk-----aAv~tCv~Ln 892 (1189)
T KOG2041|consen 825 --TENQIECLYRLELFGELEVLARTLPE-DSELLPVMADMFTSVGMCDQAVEAYLRRS----LPK-----AAVHTCVELN 892 (1189)
T ss_pred --hHhHHHHHHHHHhhhhHHHHHHhcCc-ccchHHHHHHHHHhhchHHHHHHHHHhcc----CcH-----HHHHHHHHHH
Confidence 22456666666667666666666554 44445566777777777777776654321 121 2344555666
Q ss_pred hhHHHHHH
Q 007573 319 LLNEGRQS 326 (597)
Q Consensus 319 ~~~~a~~~ 326 (597)
++.+|.++
T Consensus 893 QW~~avel 900 (1189)
T KOG2041|consen 893 QWGEAVEL 900 (1189)
T ss_pred HHHHHHHH
Confidence 66555544
No 160
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=97.89 E-value=0.00071 Score=69.04 Aligned_cols=140 Identities=14% Similarity=0.024 Sum_probs=84.4
Q ss_pred CCChhhHHHHHHHHHH--cC---CHHHHHHHHHHHHHCCCCCCh-HHHHHHHHHHhcc--------CcHHHHHHHHHHhH
Q 007573 367 SPNLVSWNTIIAAFAQ--HG---HYEKALIFFSQMGLNGFDPDG-ITFLSLLSACGHA--------GKVNESMDLFELMV 432 (597)
Q Consensus 367 ~~~~~~~~~li~~~~~--~g---~~~~A~~~~~~m~~~g~~p~~-~~~~~ll~~~~~~--------g~~~~a~~~~~~~~ 432 (597)
+.+...|...+.+... .+ +..+|..+|++..+. .|+. ..+..+..++... +++..+.+......
T Consensus 334 ~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~l--dP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~ 411 (517)
T PRK10153 334 PHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKS--EPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIV 411 (517)
T ss_pred CCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhh
Confidence 5666777777776443 22 366888888888875 5663 3343332222111 11233333333322
Q ss_pred HhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHhhCC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCc
Q 007573 433 KVYGIIPSSEHYTCLVDILSRAGQLEKAWQITQGMP-FEADTGVWGSLLAACVINLNVELGELAAKKMRELDPQNSA 508 (597)
Q Consensus 433 ~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~ 508 (597)
.......++..|..+.-.....|++++|...+++.. ..|+...|..++..+...|+.++|.+.+++++.++|.++.
T Consensus 412 al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P~~pt 488 (517)
T PRK10153 412 ALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLEMSWLNYVLLGKVYELKGDNRLAADAYSTAFNLRPGENT 488 (517)
T ss_pred hcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCch
Confidence 211123345666666666666777777777777765 5667667777777777777777777777777777777664
No 161
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=97.85 E-value=0.002 Score=60.71 Aligned_cols=156 Identities=9% Similarity=0.048 Sum_probs=112.1
Q ss_pred HHHHHcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChHH-------------H
Q 007573 378 AAFAQHGHYEKALIFFSQMGLNGFDPDGITFLSLLSACGHAGKVNESMDLFELMVKVYGIIPSSEH-------------Y 444 (597)
Q Consensus 378 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~-------------~ 444 (597)
..+...|++++|...-....+.. ..+......-..++...++.+.|...|++.. .+.|+... +
T Consensus 177 ~cl~~~~~~~~a~~ea~~ilkld-~~n~~al~vrg~~~yy~~~~~ka~~hf~qal---~ldpdh~~sk~~~~~~k~le~~ 252 (486)
T KOG0550|consen 177 ECLAFLGDYDEAQSEAIDILKLD-ATNAEALYVRGLCLYYNDNADKAINHFQQAL---RLDPDHQKSKSASMMPKKLEVK 252 (486)
T ss_pred hhhhhcccchhHHHHHHHHHhcc-cchhHHHHhcccccccccchHHHHHHHhhhh---ccChhhhhHHhHhhhHHHHHHH
Confidence 34566788888887766665432 1122222222234456678888888888765 34454222 1
Q ss_pred HHHHHHHhhcCCHHHHHHHHhhCC-CCC-----CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHH
Q 007573 445 TCLVDILSRAGQLEKAWQITQGMP-FEA-----DTGVWGSLLAACVINLNVELGELAAKKMRELDPQNSAVYVMLSNLYA 518 (597)
Q Consensus 445 ~~l~~~~~~~g~~~~A~~~~~~~~-~~p-----~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 518 (597)
..=.+-..+.|++.+|.+.+.+.. +.| +...|.....+..+.|+..+|+.-.+++++++|.-...|..-++++.
T Consensus 253 k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~syikall~ra~c~l 332 (486)
T KOG0550|consen 253 KERGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKIDSSYIKALLRRANCHL 332 (486)
T ss_pred HhhhhhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCHHHHHHHHHHHHHHH
Confidence 112344568899999999998765 444 45567777777889999999999999999999998999999999999
Q ss_pred hcCCcHHHHHHHHHHHhCC
Q 007573 519 AAGMWRDVTRVRLLMKEQG 537 (597)
Q Consensus 519 ~~g~~~~A~~~~~~~~~~~ 537 (597)
..++|++|.+-++...+..
T Consensus 333 ~le~~e~AV~d~~~a~q~~ 351 (486)
T KOG0550|consen 333 ALEKWEEAVEDYEKAMQLE 351 (486)
T ss_pred HHHHHHHHHHHHHHHHhhc
Confidence 9999999999999987754
No 162
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=97.84 E-value=0.00023 Score=64.70 Aligned_cols=101 Identities=12% Similarity=0.052 Sum_probs=87.7
Q ss_pred CCChHHHHHHHHHHhhcCCHHHHHHHHhhCC--CCCCHHHHHHHHHHHHhc---CCHHHHHHHHHHHHhcCCCCCchHHH
Q 007573 438 IPSSEHYTCLVDILSRAGQLEKAWQITQGMP--FEADTGVWGSLLAACVIN---LNVELGELAAKKMRELDPQNSAVYVM 512 (597)
Q Consensus 438 ~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~---g~~~~a~~~~~~~~~~~p~~~~~~~~ 512 (597)
+-|.+.|..|..+|.+.|+...|..-|.+.. ..+++..+..+..++..+ ....++..+++++++++|.+..+...
T Consensus 153 P~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~~iral~l 232 (287)
T COG4235 153 PGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALLRQALALDPANIRALSL 232 (287)
T ss_pred CCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCccHHHHHH
Confidence 4468999999999999999999999998765 445677888888875433 24688999999999999999999999
Q ss_pred HHHHHHhcCCcHHHHHHHHHHHhCCC
Q 007573 513 LSNLYAAAGMWRDVTRVRLLMKEQGV 538 (597)
Q Consensus 513 l~~~~~~~g~~~~A~~~~~~~~~~~~ 538 (597)
|+..+...|++.+|...|+.|.+...
T Consensus 233 LA~~afe~g~~~~A~~~Wq~lL~~lp 258 (287)
T COG4235 233 LAFAAFEQGDYAEAAAAWQMLLDLLP 258 (287)
T ss_pred HHHHHHHcccHHHHHHHHHHHHhcCC
Confidence 99999999999999999999998765
No 163
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=97.82 E-value=0.00023 Score=61.70 Aligned_cols=82 Identities=13% Similarity=0.056 Sum_probs=61.2
Q ss_pred hHHHHHHHHHHhhcCCHHHHHHHHhhCC-CCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHH
Q 007573 441 SEHYTCLVDILSRAGQLEKAWQITQGMP-FEAD----TGVWGSLLAACVINLNVELGELAAKKMRELDPQNSAVYVMLSN 515 (597)
Q Consensus 441 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 515 (597)
...+..+...+...|++++|...+++.. ..|+ ...+..++..+...|++++|+..++++++..|.++..+..++.
T Consensus 35 a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~ 114 (172)
T PRK02603 35 AFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQPSALNNIAV 114 (172)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHH
Confidence 3445666667777777777777777654 2222 3567777888888888999999999988888888888888888
Q ss_pred HHHhcCC
Q 007573 516 LYAAAGM 522 (597)
Q Consensus 516 ~~~~~g~ 522 (597)
+|...|+
T Consensus 115 ~~~~~g~ 121 (172)
T PRK02603 115 IYHKRGE 121 (172)
T ss_pred HHHHcCC
Confidence 8888776
No 164
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=97.79 E-value=0.00042 Score=67.70 Aligned_cols=103 Identities=9% Similarity=0.023 Sum_probs=82.8
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCC-ChHHHHHHHHHHhhc
Q 007573 376 IIAAFAQHGHYEKALIFFSQMGLNGFDPDGITFLSLLSACGHAGKVNESMDLFELMVKVYGIIP-SSEHYTCLVDILSRA 454 (597)
Q Consensus 376 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~ 454 (597)
-...+...|++++|++.|+++++.. +-+...|..+..++...|++++|...++.+.+. .| +...|..+..+|...
T Consensus 8 ~a~~a~~~~~~~~Ai~~~~~Al~~~-P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l---~P~~~~a~~~lg~~~~~l 83 (356)
T PLN03088 8 KAKEAFVDDDFALAVDLYTQAIDLD-PNNAELYADRAQANIKLGNFTEAVADANKAIEL---DPSLAKAYLRKGTACMKL 83 (356)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CcCCHHHHHHHHHHHHHh
Confidence 3456778899999999999999763 345677888889999999999999999999863 44 477888999999999
Q ss_pred CCHHHHHHHHhhCC-CCCCHHHHHHHHHH
Q 007573 455 GQLEKAWQITQGMP-FEADTGVWGSLLAA 482 (597)
Q Consensus 455 g~~~~A~~~~~~~~-~~p~~~~~~~l~~~ 482 (597)
|++++|...|++.. ..|+.......+..
T Consensus 84 g~~~eA~~~~~~al~l~P~~~~~~~~l~~ 112 (356)
T PLN03088 84 EEYQTAKAALEKGASLAPGDSRFTKLIKE 112 (356)
T ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 99999999999876 66765554444433
No 165
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=97.73 E-value=0.00032 Score=60.65 Aligned_cols=94 Identities=11% Similarity=-0.136 Sum_probs=73.4
Q ss_pred hHHHHHHHHHHhhcCCHHHHHHHHhhCC-CCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHH
Q 007573 441 SEHYTCLVDILSRAGQLEKAWQITQGMP-FEAD----TGVWGSLLAACVINLNVELGELAAKKMRELDPQNSAVYVMLSN 515 (597)
Q Consensus 441 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 515 (597)
...|..++..+...|++++|...+++.. ..|+ ..++..+...+...|++++|+..+++++++.|.....+..++.
T Consensus 35 a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~~~~~~~~la~ 114 (168)
T CHL00033 35 AFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERNPFLPQALNNMAV 114 (168)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHH
Confidence 4456666777777888888888887763 2222 3478888899999999999999999999999998888888888
Q ss_pred HHH-------hcCCcHHHHHHHHHHH
Q 007573 516 LYA-------AAGMWRDVTRVRLLMK 534 (597)
Q Consensus 516 ~~~-------~~g~~~~A~~~~~~~~ 534 (597)
++. ..|++++|...+++..
T Consensus 115 i~~~~~~~~~~~g~~~~A~~~~~~a~ 140 (168)
T CHL00033 115 ICHYRGEQAIEQGDSEIAEAWFDQAA 140 (168)
T ss_pred HHHHhhHHHHHcccHHHHHHHHHHHH
Confidence 888 8888886666665543
No 166
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=97.72 E-value=0.0013 Score=57.10 Aligned_cols=129 Identities=13% Similarity=0.173 Sum_probs=79.8
Q ss_pred hhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC--hHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCC-ChHHHHH
Q 007573 370 LVSWNTIIAAFAQHGHYEKALIFFSQMGLNGFDPD--GITFLSLLSACGHAGKVNESMDLFELMVKVYGIIP-SSEHYTC 446 (597)
Q Consensus 370 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~--~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~ 446 (597)
...+..+...+...|++++|...|++.......+. ...+..+...+.+.|++++|...+++..+. .| +...+..
T Consensus 35 a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~ 111 (172)
T PRK02603 35 AFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALEL---NPKQPSALNN 111 (172)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CcccHHHHHH
Confidence 34566666677777888888888877765432222 345666677777777777777777777653 23 3455556
Q ss_pred HHHHHhhcCCHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCC
Q 007573 447 LVDILSRAGQLEKAWQITQGMPFEADTGVWGSLLAACVINLNVELGELAAKKMRELDPQNSAVYVMLSNLYAAAGM 522 (597)
Q Consensus 447 l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 522 (597)
+..+|...|+...+..-++.. ...+++|.+.++++++.+|++ |..++..+...|+
T Consensus 112 lg~~~~~~g~~~~a~~~~~~A------------------~~~~~~A~~~~~~a~~~~p~~---~~~~~~~~~~~~~ 166 (172)
T PRK02603 112 IAVIYHKRGEKAEEAGDQDEA------------------EALFDKAAEYWKQAIRLAPNN---YIEAQNWLKTTGR 166 (172)
T ss_pred HHHHHHHcCChHhHhhCHHHH------------------HHHHHHHHHHHHHHHhhCchh---HHHHHHHHHhcCc
Confidence 666666666655544322221 112577888889988888876 4444444444443
No 167
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=97.71 E-value=0.00041 Score=52.96 Aligned_cols=90 Identities=19% Similarity=0.187 Sum_probs=46.2
Q ss_pred HHHhccCcHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHhhCC-CCC-CHHHHHHHHHHHHhcCCHH
Q 007573 413 SACGHAGKVNESMDLFELMVKVYGIIPSSEHYTCLVDILSRAGQLEKAWQITQGMP-FEA-DTGVWGSLLAACVINLNVE 490 (597)
Q Consensus 413 ~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~l~~~~~~~g~~~ 490 (597)
..+...|++++|...++.+.+. .+.+...+..+...+...|++++|.+.+++.. ..| +..++..+...+...|+++
T Consensus 8 ~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (100)
T cd00189 8 NLYYKLGDYDEALEYYEKALEL--DPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKLGKYE 85 (100)
T ss_pred HHHHHHhcHHHHHHHHHHHHhc--CCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHHHhHH
Confidence 3344445555555555544432 11122344445555555555555555555432 222 3345556666666666667
Q ss_pred HHHHHHHHHHhcCC
Q 007573 491 LGELAAKKMRELDP 504 (597)
Q Consensus 491 ~a~~~~~~~~~~~p 504 (597)
.|...+.++++..|
T Consensus 86 ~a~~~~~~~~~~~~ 99 (100)
T cd00189 86 EALEAYEKALELDP 99 (100)
T ss_pred HHHHHHHHHHccCC
Confidence 77776666666555
No 168
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=97.70 E-value=5.3e-05 Score=53.99 Aligned_cols=54 Identities=13% Similarity=0.190 Sum_probs=46.6
Q ss_pred HhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCcHHHHHHHHHHHhCC
Q 007573 484 VINLNVELGELAAKKMRELDPQNSAVYVMLSNLYAAAGMWRDVTRVRLLMKEQG 537 (597)
Q Consensus 484 ~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 537 (597)
...|++++|+..++++++.+|+++.++..++.+|.+.|++++|.++++++....
T Consensus 2 l~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~ 55 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQD 55 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGG
T ss_pred hhccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 467899999999999999999999999999999999999999999998876543
No 169
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=97.68 E-value=0.00016 Score=52.28 Aligned_cols=59 Identities=12% Similarity=0.081 Sum_probs=51.5
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCcHHHHHHHHHHHhCCC
Q 007573 480 LAACVINLNVELGELAAKKMRELDPQNSAVYVMLSNLYAAAGMWRDVTRVRLLMKEQGV 538 (597)
Q Consensus 480 ~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 538 (597)
...+...+++++|.++++++++++|+++..+...+.++...|++++|.+.++...+.+.
T Consensus 2 ~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p 60 (73)
T PF13371_consen 2 KQIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSP 60 (73)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCC
Confidence 35678889999999999999999999999999999999999999999999999886553
No 170
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=97.66 E-value=9.5e-05 Score=52.07 Aligned_cols=61 Identities=18% Similarity=0.167 Sum_probs=49.8
Q ss_pred HHHHHhhcCCHHHHHHHHhhCC-CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCC
Q 007573 447 LVDILSRAGQLEKAWQITQGMP-FEA-DTGVWGSLLAACVINLNVELGELAAKKMRELDPQNS 507 (597)
Q Consensus 447 l~~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~ 507 (597)
+...+...|++++|.+.|+++. ..| +...|..+..++...|++++|...++++++.+|++|
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~p 65 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPDNP 65 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-H
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCC
Confidence 4567788899999999998876 456 456888899999999999999999999999999864
No 171
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=97.63 E-value=0.0021 Score=60.53 Aligned_cols=134 Identities=12% Similarity=0.152 Sum_probs=99.8
Q ss_pred hhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHH-HhccCcHHHHHHHHHHhHHhcCCCCChHHHHHHHH
Q 007573 371 VSWNTIIAAFAQHGHYEKALIFFSQMGLNGFDPDGITFLSLLSA-CGHAGKVNESMDLFELMVKVYGIIPSSEHYTCLVD 449 (597)
Q Consensus 371 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~-~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~ 449 (597)
.+|-.++....+.+..+.|..+|.+.++.+ ..+...|...... +...++.+.|..+|+...+.+ ..+...|...++
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~-~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f--~~~~~~~~~Y~~ 78 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKDK-RCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKF--PSDPDFWLEYLD 78 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHH--TT-HHHHHHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHC--CCCHHHHHHHHH
Confidence 367778888888888999999999998543 3344455544444 333567777999999998854 456778888899
Q ss_pred HHhhcCCHHHHHHHHhhCC-CCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCC
Q 007573 450 ILSRAGQLEKAWQITQGMP-FEAD----TGVWGSLLAACVINLNVELGELAAKKMRELDPQNS 507 (597)
Q Consensus 450 ~~~~~g~~~~A~~~~~~~~-~~p~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~ 507 (597)
.+.+.|+.+.|..+|++.. .-|. ...|...+.--.+.|+.+....+.+++.+.-|++.
T Consensus 79 ~l~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~~~~~~ 141 (280)
T PF05843_consen 79 FLIKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEELFPEDN 141 (280)
T ss_dssp HHHHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHTTTS-
T ss_pred HHHHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhhh
Confidence 9999999999999999876 2232 34899999999999999999999999999887743
No 172
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=97.60 E-value=8.3e-05 Score=43.17 Aligned_cols=31 Identities=39% Similarity=0.713 Sum_probs=24.9
Q ss_pred hHHHHHHHHHHHcCChhHHHHHHHHhHHCCC
Q 007573 270 VSFNAMIAGYAQNGVAEEALRLFSGMIKMDM 300 (597)
Q Consensus 270 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~ 300 (597)
++||.++++|++.|++++|.++|++|.+.|+
T Consensus 1 v~y~~li~~~~~~~~~~~a~~~~~~M~~~g~ 31 (31)
T PF01535_consen 1 VTYNSLISGYCKMGQFEEALEVFDEMRERGI 31 (31)
T ss_pred CcHHHHHHHHHccchHHHHHHHHHHHhHCcC
Confidence 3688888888888888888888888887764
No 173
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=97.58 E-value=9.6e-05 Score=42.89 Aligned_cols=31 Identities=32% Similarity=0.727 Sum_probs=23.8
Q ss_pred hhHHHHHHHHHHcCCHHHHHHHHHHHHHCCC
Q 007573 371 VSWNTIIAAFAQHGHYEKALIFFSQMGLNGF 401 (597)
Q Consensus 371 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~ 401 (597)
++|+.++++|++.|++++|.++|++|.+.|+
T Consensus 1 v~y~~li~~~~~~~~~~~a~~~~~~M~~~g~ 31 (31)
T PF01535_consen 1 VTYNSLISGYCKMGQFEEALEVFDEMRERGI 31 (31)
T ss_pred CcHHHHHHHHHccchHHHHHHHHHHHhHCcC
Confidence 3678888888888888888888888877663
No 174
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=97.58 E-value=0.11 Score=52.62 Aligned_cols=57 Identities=18% Similarity=0.095 Sum_probs=30.2
Q ss_pred CcchHHHHHHHHHcCCChHHHHHHHhhcCCCCCCchHHHHHHHHHHhcCCHHHHHHHHhhcCCC
Q 007573 204 NVVSWTVMITGYVKNERFCEARELFYRMPDYDKNVFVVTAMITGFCKVGMLENARLLFERIQPK 267 (597)
Q Consensus 204 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 267 (597)
|....-.+...+.+.|.-++|.+.|-+... | .+-+..|...+++.+|.++-++..-|
T Consensus 851 ~s~llp~~a~mf~svGMC~qAV~a~Lr~s~--p-----kaAv~tCv~LnQW~~avelaq~~~l~ 907 (1189)
T KOG2041|consen 851 DSELLPVMADMFTSVGMCDQAVEAYLRRSL--P-----KAAVHTCVELNQWGEAVELAQRFQLP 907 (1189)
T ss_pred ccchHHHHHHHHHhhchHHHHHHHHHhccC--c-----HHHHHHHHHHHHHHHHHHHHHhccch
Confidence 344455556666666666666665544322 2 12344455556666666665554443
No 175
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=97.57 E-value=0.0031 Score=64.50 Aligned_cols=135 Identities=16% Similarity=0.101 Sum_probs=99.1
Q ss_pred CCCCChHHHHHHHHHHhcc-----CcHHHHHHHHHHhHHhcCCCCC-hHHHHHHHHHHhhc--------CCHHHHHHHHh
Q 007573 400 GFDPDGITFLSLLSACGHA-----GKVNESMDLFELMVKVYGIIPS-SEHYTCLVDILSRA--------GQLEKAWQITQ 465 (597)
Q Consensus 400 g~~p~~~~~~~ll~~~~~~-----g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~--------g~~~~A~~~~~ 465 (597)
+.+.|...|...+.+.... +....|..+|+++.+ ..|+ ...|..+..++... ++...+.+..+
T Consensus 332 ~~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~---ldP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~ 408 (517)
T PRK10153 332 GLPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILK---SEPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELD 408 (517)
T ss_pred cCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH---hCCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHH
Confidence 4466778888888775432 347789999999885 4676 55565554444322 22345555554
Q ss_pred hCC----CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCcHHHHHHHHHHHhCCC
Q 007573 466 GMP----FEADTGVWGSLLAACVINLNVELGELAAKKMRELDPQNSAVYVMLSNLYAAAGMWRDVTRVRLLMKEQGV 538 (597)
Q Consensus 466 ~~~----~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 538 (597)
+.. ...++..+.++.-.....|++++|...++++++++| +...|..++.++...|+.++|.+.+++......
T Consensus 409 ~a~al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~p-s~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P 484 (517)
T PRK10153 409 NIVALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLEM-SWLNYVLLGKVYELKGDNRLAADAYSTAFNLRP 484 (517)
T ss_pred HhhhcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Confidence 422 233556787777777788999999999999999999 477899999999999999999999999877554
No 176
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=97.55 E-value=0.014 Score=55.27 Aligned_cols=141 Identities=13% Similarity=0.187 Sum_probs=72.8
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHhcc-CcHHHHHHHHHHhHHhcCCCCC----hHHHHHHHHHH
Q 007573 377 IAAFAQHGHYEKALIFFSQMGLNGFDPDGITFLSLLSACGHA-GKVNESMDLFELMVKVYGIIPS----SEHYTCLVDIL 451 (597)
Q Consensus 377 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~-g~~~~a~~~~~~~~~~~~~~p~----~~~~~~l~~~~ 451 (597)
+..|...|++..|-..+.++ ...|... |++++|.+.|++....+..... ...+..++..+
T Consensus 101 ~~~y~~~G~~~~aA~~~~~l---------------A~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~ 165 (282)
T PF14938_consen 101 IEIYREAGRFSQAAKCLKEL---------------AEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLY 165 (282)
T ss_dssp HHHHHHCT-HHHHHHHHHHH---------------HHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHH
T ss_pred HHHHHhcCcHHHHHHHHHHH---------------HHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHH
Confidence 44555555555554444433 3345555 6667777666666543322222 33455667777
Q ss_pred hhcCCHHHHHHHHhhCC---C-CC----CHH-HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC-----CchHHHHHHHH
Q 007573 452 SRAGQLEKAWQITQGMP---F-EA----DTG-VWGSLLAACVINLNVELGELAAKKMRELDPQN-----SAVYVMLSNLY 517 (597)
Q Consensus 452 ~~~g~~~~A~~~~~~~~---~-~p----~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~-----~~~~~~l~~~~ 517 (597)
.+.|++++|.++|+++. . .+ +.. .+...+-.+...||...|...+++....+|.- ......|+.++
T Consensus 166 ~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E~~~~~~l~~A~ 245 (282)
T PF14938_consen 166 ARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPSFASSREYKFLEDLLEAY 245 (282)
T ss_dssp HHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHHHHHHHHHHHHH
T ss_pred HHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHH
Confidence 78888888888877643 1 11 111 22223334556788888888888888877753 22334445554
Q ss_pred Hh--cCCcHHHHHHHHH
Q 007573 518 AA--AGMWRDVTRVRLL 532 (597)
Q Consensus 518 ~~--~g~~~~A~~~~~~ 532 (597)
-. ...+++++.-|+.
T Consensus 246 ~~~D~e~f~~av~~~d~ 262 (282)
T PF14938_consen 246 EEGDVEAFTEAVAEYDS 262 (282)
T ss_dssp HTT-CCCHHHHCHHHTT
T ss_pred HhCCHHHHHHHHHHHcc
Confidence 43 2234444444443
No 177
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=97.55 E-value=0.00087 Score=63.07 Aligned_cols=129 Identities=11% Similarity=0.115 Sum_probs=102.4
Q ss_pred HHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhh-cCCHHHHHHHHhhCC--CCCCHHHHHHHHHH
Q 007573 406 ITFLSLLSACGHAGKVNESMDLFELMVKVYGIIPSSEHYTCLVDILSR-AGQLEKAWQITQGMP--FEADTGVWGSLLAA 482 (597)
Q Consensus 406 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~-~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~ 482 (597)
.+|..++..+.+.+..+.|+.+|.++++. -..+..+|...+.+-.+ .++.+.|.++|+... ...+...|...+.-
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~--~~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~~~~~~~Y~~~ 79 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKD--KRCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKFPSDPDFWLEYLDF 79 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCC--CCS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcC--CCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHH
Confidence 46888889999999999999999999753 23356667776666445 566777999999876 56678899999999
Q ss_pred HHhcCCHHHHHHHHHHHHhcCCCCC---chHHHHHHHHHhcCCcHHHHHHHHHHHhC
Q 007573 483 CVINLNVELGELAAKKMRELDPQNS---AVYVMLSNLYAAAGMWRDVTRVRLLMKEQ 536 (597)
Q Consensus 483 ~~~~g~~~~a~~~~~~~~~~~p~~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 536 (597)
+...|+.+.|..+|++++..-|... ..|...+..-.+.|+.+.+.++.+++.+.
T Consensus 80 l~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~ 136 (280)
T PF05843_consen 80 LIKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEEL 136 (280)
T ss_dssp HHHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHH
T ss_pred HHHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 9999999999999999998765543 57889999999999999999999998763
No 178
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=97.53 E-value=0.00033 Score=52.27 Aligned_cols=80 Identities=16% Similarity=0.185 Sum_probs=32.7
Q ss_pred CcHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHhhCCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHH
Q 007573 419 GKVNESMDLFELMVKVYGIIPSSEHYTCLVDILSRAGQLEKAWQITQGMPFEADT-GVWGSLLAACVINLNVELGELAAK 497 (597)
Q Consensus 419 g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~a~~~~~ 497 (597)
|+++.|..+++++.+.....++...+..+..+|.+.|++++|..++++....|.. .....++.++.+.|++++|+.+++
T Consensus 3 ~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~~~~~~~~~~~~~l~a~~~~~l~~y~eAi~~l~ 82 (84)
T PF12895_consen 3 GNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQKLKLDPSNPDIHYLLARCLLKLGKYEEAIKALE 82 (84)
T ss_dssp T-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHCHTHHHCHHHHHHHHHHHHHHTT-HHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHh
Confidence 4444444444444443211112223333445555555555555555442222221 222233444555555555555554
Q ss_pred H
Q 007573 498 K 498 (597)
Q Consensus 498 ~ 498 (597)
+
T Consensus 83 ~ 83 (84)
T PF12895_consen 83 K 83 (84)
T ss_dssp H
T ss_pred c
Confidence 4
No 179
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=97.53 E-value=0.00084 Score=61.93 Aligned_cols=95 Identities=8% Similarity=-0.025 Sum_probs=62.6
Q ss_pred HHHHHHHHHhhcCCHHHHHHHHhhCC-CCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC---CchHHHHH
Q 007573 443 HYTCLVDILSRAGQLEKAWQITQGMP-FEADT----GVWGSLLAACVINLNVELGELAAKKMRELDPQN---SAVYVMLS 514 (597)
Q Consensus 443 ~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p~~----~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~---~~~~~~l~ 514 (597)
.|...+..+.+.|++++|...|+... ..|+. ..+.-++..|...|++++|...|+++++..|++ +.++..++
T Consensus 145 ~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg 224 (263)
T PRK10803 145 DYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVG 224 (263)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHH
Confidence 34444444455566777766666654 23332 355566777777788888888888888777665 45556667
Q ss_pred HHHHhcCCcHHHHHHHHHHHhCC
Q 007573 515 NLYAAAGMWRDVTRVRLLMKEQG 537 (597)
Q Consensus 515 ~~~~~~g~~~~A~~~~~~~~~~~ 537 (597)
.++...|++++|.++++.+.+..
T Consensus 225 ~~~~~~g~~~~A~~~~~~vi~~y 247 (263)
T PRK10803 225 VIMQDKGDTAKAKAVYQQVIKKY 247 (263)
T ss_pred HHHHHcCCHHHHHHHHHHHHHHC
Confidence 77777888888888887776543
No 180
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=97.51 E-value=0.0022 Score=55.37 Aligned_cols=61 Identities=11% Similarity=0.145 Sum_probs=29.1
Q ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC--hHHHHHHHHHHhccCcHHHHHHHHHHhH
Q 007573 372 SWNTIIAAFAQHGHYEKALIFFSQMGLNGFDPD--GITFLSLLSACGHAGKVNESMDLFELMV 432 (597)
Q Consensus 372 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~--~~~~~~ll~~~~~~g~~~~a~~~~~~~~ 432 (597)
.|..+...+...|++++|+..|++.......|. ..++..+...+...|++++|...++...
T Consensus 37 ~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al 99 (168)
T CHL00033 37 TYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQAL 99 (168)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 444444455555555555555555543321111 1244444455555555555555555444
No 181
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=97.50 E-value=0.00029 Score=50.31 Aligned_cols=65 Identities=20% Similarity=0.167 Sum_probs=53.0
Q ss_pred ChHHHHHHHHHHhhcCCHHHHHHHHhhCC-CCC-CHHHHHHHHHHHHhcC-CHHHHHHHHHHHHhcCC
Q 007573 440 SSEHYTCLVDILSRAGQLEKAWQITQGMP-FEA-DTGVWGSLLAACVINL-NVELGELAAKKMRELDP 504 (597)
Q Consensus 440 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~l~~~~~~~g-~~~~a~~~~~~~~~~~p 504 (597)
+...|..+...+...|++++|+..|++.. ..| +...|..+..++...| ++++|++.++++++++|
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP 69 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence 35667778888888888888888887765 445 4568888888999999 79999999999999887
No 182
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=97.49 E-value=0.019 Score=48.11 Aligned_cols=133 Identities=11% Similarity=0.064 Sum_probs=103.1
Q ss_pred CCCChHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHhhCC-CCC---CHHHH
Q 007573 401 FDPDGITFLSLLSACGHAGKVNESMDLFELMVKVYGIIPSSEHYTCLVDILSRAGQLEKAWQITQGMP-FEA---DTGVW 476 (597)
Q Consensus 401 ~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p---~~~~~ 476 (597)
.-|+...-..+..+....|+..+|...|++...- -+..|....-.+..+....+++.+|...++.+- .+| ++..-
T Consensus 85 ~ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG-~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~ 163 (251)
T COG4700 85 IAPTVQNRYRLANALAELGRYHEAVPHYQQALSG-IFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGH 163 (251)
T ss_pred hchhHHHHHHHHHHHHHhhhhhhhHHHHHHHhcc-ccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCch
Confidence 3577777777888889999999999999988763 445667888888888889999999988887653 222 23344
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCcHHHHHHHHHHHh
Q 007573 477 GSLLAACVINLNVELGELAAKKMRELDPQNSAVYVMLSNLYAAAGMWRDVTRVRLLMKE 535 (597)
Q Consensus 477 ~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 535 (597)
..+...+...|..+.|+..|+.++.--|. +......+..+.++|+.++|..-+..+.+
T Consensus 164 Ll~aR~laa~g~~a~Aesafe~a~~~ypg-~~ar~~Y~e~La~qgr~~ea~aq~~~v~d 221 (251)
T COG4700 164 LLFARTLAAQGKYADAESAFEVAISYYPG-PQARIYYAEMLAKQGRLREANAQYVAVVD 221 (251)
T ss_pred HHHHHHHHhcCCchhHHHHHHHHHHhCCC-HHHHHHHHHHHHHhcchhHHHHHHHHHHH
Confidence 45677888999999999999999998887 44566677888999998888877766654
No 183
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=97.46 E-value=0.049 Score=51.54 Aligned_cols=108 Identities=14% Similarity=0.142 Sum_probs=63.2
Q ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC-----ChH-HHHHHHHHHhccCcHHHHHHHHHHhHHhc-CCCCC--hH
Q 007573 372 SWNTIIAAFAQHGHYEKALIFFSQMGLNGFDP-----DGI-TFLSLLSACGHAGKVNESMDLFELMVKVY-GIIPS--SE 442 (597)
Q Consensus 372 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-----~~~-~~~~ll~~~~~~g~~~~a~~~~~~~~~~~-~~~p~--~~ 442 (597)
.+..+...+.+.|++++|+++|++....-... +.. .|...+-++...|++..|.+.++...... ++..+ ..
T Consensus 157 ~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E~~ 236 (282)
T PF14938_consen 157 CLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPSFASSREYK 236 (282)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHH
Confidence 34556777888999999999998887643221 111 23333445566788888988888875331 22223 33
Q ss_pred HHHHHHHHHhh--cCCHHHHHHHHhhCCCCCCHHHHHHHH
Q 007573 443 HYTCLVDILSR--AGQLEKAWQITQGMPFEADTGVWGSLL 480 (597)
Q Consensus 443 ~~~~l~~~~~~--~g~~~~A~~~~~~~~~~p~~~~~~~l~ 480 (597)
....|+.++-. ...+++|..-|+.+. +.|...-..|+
T Consensus 237 ~~~~l~~A~~~~D~e~f~~av~~~d~~~-~ld~w~~~~l~ 275 (282)
T PF14938_consen 237 FLEDLLEAYEEGDVEAFTEAVAEYDSIS-RLDNWKTKMLL 275 (282)
T ss_dssp HHHHHHHHHHTT-CCCHHHHCHHHTTSS----HHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHcccC-ccHHHHHHHHH
Confidence 45556666643 346778888888776 44544433333
No 184
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.46 E-value=0.11 Score=49.55 Aligned_cols=104 Identities=15% Similarity=0.159 Sum_probs=56.8
Q ss_pred HHHHHHHHhcCCHHHHHHHHhhcCCCChhHHHHHHHHHHHcCChhHHHHHHHHhHHCCCCCCHHHHHHHHHHHhccchhH
Q 007573 242 TAMITGFCKVGMLENARLLFERIQPKDCVSFNAMIAGYAQNGVAEEALRLFSGMIKMDMQPDDATLVSVFTACSALQLLN 321 (597)
Q Consensus 242 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~ 321 (597)
+..+.-+...|+...|.++-.+..-+|..-|-..+.+++..++|++-..+... +-.+..|-.++.+|...|...
T Consensus 181 ~~Ti~~li~~~~~k~A~kl~k~Fkv~dkrfw~lki~aLa~~~~w~eL~~fa~s------kKsPIGyepFv~~~~~~~~~~ 254 (319)
T PF04840_consen 181 NDTIRKLIEMGQEKQAEKLKKEFKVPDKRFWWLKIKALAENKDWDELEKFAKS------KKSPIGYEPFVEACLKYGNKK 254 (319)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCCHHHHHHHHhC------CCCCCChHHHHHHHHHCCCHH
Confidence 33445555566666666666666666666666666666666666655543321 112245555566666556555
Q ss_pred HHHHHHHHHHHhCCCCcccHHHHHHHHHHhcCCHHHHHHH
Q 007573 322 EGRQSHVLVIRNGFEANVSVCNAVITMYSRCGGILDSELA 361 (597)
Q Consensus 322 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 361 (597)
+|..+...+ .+..-+.+|.++|++.+|.+.
T Consensus 255 eA~~yI~k~----------~~~~rv~~y~~~~~~~~A~~~ 284 (319)
T PF04840_consen 255 EASKYIPKI----------PDEERVEMYLKCGDYKEAAQE 284 (319)
T ss_pred HHHHHHHhC----------ChHHHHHHHHHCCCHHHHHHH
Confidence 555554431 113345555555555555443
No 185
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=97.46 E-value=0.0043 Score=51.88 Aligned_cols=110 Identities=15% Similarity=0.132 Sum_probs=94.8
Q ss_pred HHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHhhCC---CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 007573 429 ELMVKVYGIIPSSEHYTCLVDILSRAGQLEKAWQITQGMP---FEADTGVWGSLLAACVINLNVELGELAAKKMRELDPQ 505 (597)
Q Consensus 429 ~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~ 505 (597)
++..+...+.|+...-..|..++.+.|+..||...|++.. ..-|......+..+....+++..|...++++.+-+|.
T Consensus 77 Rea~~~~~~ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa 156 (251)
T COG4700 77 REATEELAIAPTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPA 156 (251)
T ss_pred HHHHHHHhhchhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCc
Confidence 3344444667888888899999999999999999999876 5568889999999999999999999999999998876
Q ss_pred C--CchHHHHHHHHHhcCCcHHHHHHHHHHHhCCC
Q 007573 506 N--SAVYVMLSNLYAAAGMWRDVTRVRLLMKEQGV 538 (597)
Q Consensus 506 ~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 538 (597)
- |.....++..|...|++.+|...|+.....-.
T Consensus 157 ~r~pd~~Ll~aR~laa~g~~a~Aesafe~a~~~yp 191 (251)
T COG4700 157 FRSPDGHLLFARTLAAQGKYADAESAFEVAISYYP 191 (251)
T ss_pred cCCCCchHHHHHHHHhcCCchhHHHHHHHHHHhCC
Confidence 4 77888999999999999999999999887543
No 186
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=97.44 E-value=9.8e-05 Score=43.65 Aligned_cols=33 Identities=36% Similarity=0.569 Sum_probs=30.9
Q ss_pred HHHHHhcCCCCCchHHHHHHHHHhcCCcHHHHH
Q 007573 496 AKKMRELDPQNSAVYVMLSNLYAAAGMWRDVTR 528 (597)
Q Consensus 496 ~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 528 (597)
|+++++++|+++.+|..++.+|...|++++|++
T Consensus 2 y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~~ 34 (34)
T PF13431_consen 2 YKKAIELNPNNAEAYNNLANLYLNQGDYEEAIA 34 (34)
T ss_pred hHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhcC
Confidence 688999999999999999999999999999863
No 187
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=97.43 E-value=0.0015 Score=61.44 Aligned_cols=130 Identities=13% Similarity=0.051 Sum_probs=92.6
Q ss_pred HHHHHHHHHHhccCcHHHHHHHHHHh---HHhcCCCCC-hHHHHHHHHHHhhcCCHHHHHHHHhhCC--------CCCCH
Q 007573 406 ITFLSLLSACGHAGKVNESMDLFELM---VKVYGIIPS-SEHYTCLVDILSRAGQLEKAWQITQGMP--------FEADT 473 (597)
Q Consensus 406 ~~~~~ll~~~~~~g~~~~a~~~~~~~---~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~--------~~p~~ 473 (597)
..|..+.+.|.-.|+++.|+...+.- .+.+|-.-. ...+..+.+.+.-.|.++.|.+.|+.-. .....
T Consensus 196 Ra~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEA 275 (639)
T KOG1130|consen 196 RAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEA 275 (639)
T ss_pred chhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHH
Confidence 34666666667778888888765532 233443322 4567788888899999999998887532 11234
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhc----CC--CCCchHHHHHHHHHhcCCcHHHHHHHHHHHh
Q 007573 474 GVWGSLLAACVINLNVELGELAAKKMREL----DP--QNSAVYVMLSNLYAAAGMWRDVTRVRLLMKE 535 (597)
Q Consensus 474 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~p--~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 535 (597)
....+|...|.-..+++.|+.++.+-+.+ +. ....++..|++++...|..++|..+.+.-++
T Consensus 276 QscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl~ 343 (639)
T KOG1130|consen 276 QSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHLR 343 (639)
T ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 46678888888888999999888776543 22 2367788999999999999999888776654
No 188
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=97.39 E-value=0.028 Score=51.50 Aligned_cols=172 Identities=10% Similarity=0.023 Sum_probs=101.3
Q ss_pred HHHHHhcCCHHHHHHHHhccCC--CCh-hh---HHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHhc--
Q 007573 346 ITMYSRCGGILDSELAFRQIHS--PNL-VS---WNTIIAAFAQHGHYEKALIFFSQMGLNGFDPDGITFLSLLSACGH-- 417 (597)
Q Consensus 346 ~~~~~~~g~~~~A~~~~~~~~~--~~~-~~---~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~-- 417 (597)
...+.+.|++++|.+.|+.+.. |+. .. .-.++.++.+.+++++|...+++..+....-...-+...+.+.+.
T Consensus 39 A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~Y~~g~~~~~ 118 (243)
T PRK10866 39 AQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVLYMRGLTNMA 118 (243)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHHHHHHHhhhh
Confidence 3444556788888888777762 222 22 233556677888888888888888765221112223333333221
Q ss_pred cC---------------c---HHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHhhCCCCCCHHHHHHH
Q 007573 418 AG---------------K---VNESMDLFELMVKVYGIIPSSEHYTCLVDILSRAGQLEKAWQITQGMPFEADTGVWGSL 479 (597)
Q Consensus 418 ~g---------------~---~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l 479 (597)
.+ + ..+|...|+.+++.+ |+ ..-..+|...+..+...- ...-..+
T Consensus 119 ~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~y---P~-------------S~ya~~A~~rl~~l~~~l-a~~e~~i 181 (243)
T PRK10866 119 LDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGY---PN-------------SQYTTDATKRLVFLKDRL-AKYELSV 181 (243)
T ss_pred cchhhhhhccCCCccccCHHHHHHHHHHHHHHHHHC---cC-------------ChhHHHHHHHHHHHHHHH-HHHHHHH
Confidence 11 1 223444455554432 22 222334433333322000 0011134
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhcCCCC---CchHHHHHHHHHhcCCcHHHHHHHHHHH
Q 007573 480 LAACVINLNVELGELAAKKMRELDPQN---SAVYVMLSNLYAAAGMWRDVTRVRLLMK 534 (597)
Q Consensus 480 ~~~~~~~g~~~~a~~~~~~~~~~~p~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 534 (597)
..-|.+.|.+.-|+.-++.+++.-|+. +.++..+..+|...|..++|.++...+.
T Consensus 182 a~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l~ 239 (243)
T PRK10866 182 AEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKIIA 239 (243)
T ss_pred HHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHHh
Confidence 455888999999999999999988876 5667888999999999999999887654
No 189
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=97.39 E-value=0.25 Score=51.94 Aligned_cols=108 Identities=9% Similarity=0.224 Sum_probs=59.7
Q ss_pred hcCChHHHHHHHhhcCC--CCcchHHHHHHHH--HhCCChhHHHHHHhhCCCC---CcchHHHHHHHHHcCCChHHHHHH
Q 007573 62 RAGKISAARQLFDQMTT--KDVITWNAIITGY--WQNGFLQESKNLFQSMPVK---NIVSWNCMIAGCIDNDRIDDAFDY 134 (597)
Q Consensus 62 ~~g~~~~A~~~~~~~~~--~~~~~~~~li~~~--~~~g~~~~A~~~~~~~~~~---~~~~~~~ll~~~~~~~~~~~A~~~ 134 (597)
..+++..|.+..+++.+ ||. .|...+.++ .+.|+.++|..+++....+ |..|...+-.+|.+.++.++|..+
T Consensus 21 d~~qfkkal~~~~kllkk~Pn~-~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~D~~tLq~l~~~y~d~~~~d~~~~~ 99 (932)
T KOG2053|consen 21 DSSQFKKALAKLGKLLKKHPNA-LYAKVLKALSLFRLGKGDEALKLLEALYGLKGTDDLTLQFLQNVYRDLGKLDEAVHL 99 (932)
T ss_pred hhHHHHHHHHHHHHHHHHCCCc-HHHHHHHHHHHHHhcCchhHHHHHhhhccCCCCchHHHHHHHHHHHHHhhhhHHHHH
Confidence 34566666666666544 333 234444443 4566666666666655432 556666666666666666666666
Q ss_pred HccCC--CCChhhHHHHHHHHHcCCChH----HHHHHHccCC
Q 007573 135 FQAMP--ERNTATYNAMISGFLKHGRLE----EATRLFEQMP 170 (597)
Q Consensus 135 ~~~~~--~~~~~~~~~l~~~~~~~g~~~----~A~~~~~~~~ 170 (597)
|++.. -|+......+..+|+|.+.+. .|.+++...+
T Consensus 100 Ye~~~~~~P~eell~~lFmayvR~~~yk~qQkaa~~LyK~~p 141 (932)
T KOG2053|consen 100 YERANQKYPSEELLYHLFMAYVREKSYKKQQKAALQLYKNFP 141 (932)
T ss_pred HHHHHhhCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 66665 334444445555566665553 2444444443
No 190
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=97.38 E-value=0.00023 Score=50.66 Aligned_cols=50 Identities=18% Similarity=0.268 Sum_probs=24.6
Q ss_pred ccCcHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHhhCC
Q 007573 417 HAGKVNESMDLFELMVKVYGIIPSSEHYTCLVDILSRAGQLEKAWQITQGMP 468 (597)
Q Consensus 417 ~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 468 (597)
..|++++|.++|+.+... .+-+...+..++.+|.+.|++++|.++++++.
T Consensus 3 ~~~~~~~A~~~~~~~l~~--~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~ 52 (68)
T PF14559_consen 3 KQGDYDEAIELLEKALQR--NPDNPEARLLLAQCYLKQGQYDEAEELLERLL 52 (68)
T ss_dssp HTTHHHHHHHHHHHHHHH--TTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCH
T ss_pred hccCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 345555555555555543 11234444455555555555555555555544
No 191
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=97.37 E-value=0.0018 Score=51.38 Aligned_cols=88 Identities=17% Similarity=-0.005 Sum_probs=58.6
Q ss_pred HHHHHhhcCCHHHHHHHHhhCC-C---CCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC---CCchHHHHHHHHH
Q 007573 447 LVDILSRAGQLEKAWQITQGMP-F---EAD-TGVWGSLLAACVINLNVELGELAAKKMRELDPQ---NSAVYVMLSNLYA 518 (597)
Q Consensus 447 l~~~~~~~g~~~~A~~~~~~~~-~---~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~---~~~~~~~l~~~~~ 518 (597)
+..++-..|+.++|+.+|++.. . .++ ...+..+.+++...|++++|..++++.....|+ +......++.++.
T Consensus 7 ~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L~ 86 (120)
T PF12688_consen 7 LAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALALY 86 (120)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHH
Confidence 3455556666777766666543 1 111 235556777788888888888888888877776 4555666777788
Q ss_pred hcCCcHHHHHHHHHHH
Q 007573 519 AAGMWRDVTRVRLLMK 534 (597)
Q Consensus 519 ~~g~~~~A~~~~~~~~ 534 (597)
..|+.++|++.+-...
T Consensus 87 ~~gr~~eAl~~~l~~l 102 (120)
T PF12688_consen 87 NLGRPKEALEWLLEAL 102 (120)
T ss_pred HCCCHHHHHHHHHHHH
Confidence 8888888887765543
No 192
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=97.36 E-value=0.0035 Score=47.90 Aligned_cols=81 Identities=12% Similarity=0.065 Sum_probs=66.7
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHhHHCCC-CCCHHHHHHHHHHHhccc--------hhHHHHHHHHHHHHhCCCCcccH
Q 007573 271 SFNAMIAGYAQNGVAEEALRLFSGMIKMDM-QPDDATLVSVFTACSALQ--------LLNEGRQSHVLVIRNGFEANVSV 341 (597)
Q Consensus 271 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~~~~~~~ll~~~~~~~--------~~~~a~~~~~~~~~~~~~~~~~~ 341 (597)
+-...|..+...+++...-.+|+.+.+.|+ .|+..+|+.++.+.++.. ++-....+++.++..+++|+..+
T Consensus 27 t~i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~et 106 (120)
T PF08579_consen 27 TQIDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDET 106 (120)
T ss_pred HHHHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHH
Confidence 445567777778999999999999999999 999999999998876432 34566778899999999999999
Q ss_pred HHHHHHHHHh
Q 007573 342 CNAVITMYSR 351 (597)
Q Consensus 342 ~~~l~~~~~~ 351 (597)
|+.++..+.+
T Consensus 107 Ynivl~~Llk 116 (120)
T PF08579_consen 107 YNIVLGSLLK 116 (120)
T ss_pred HHHHHHHHHH
Confidence 9998887765
No 193
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=97.32 E-value=0.0072 Score=49.92 Aligned_cols=93 Identities=8% Similarity=0.070 Sum_probs=64.4
Q ss_pred HHHHHHHHhcCCHHHHHHHHhccC---CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHhccC
Q 007573 343 NAVITMYSRCGGILDSELAFRQIH---SPNLVSWNTIIAAFAQHGHYEKALIFFSQMGLNGFDPDGITFLSLLSACGHAG 419 (597)
Q Consensus 343 ~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g 419 (597)
-.+...+...|++++|.++|+.+. +.+..-|-.|..++-..|++++|+..|....... +-|+..+-.+..++...|
T Consensus 39 Y~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~-~ddp~~~~~ag~c~L~lG 117 (157)
T PRK15363 39 YRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIK-IDAPQAPWAAAECYLACD 117 (157)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCchHHHHHHHHHHHcC
Confidence 344455566777777777777665 3445566777777777788888888887777654 345666777777777788
Q ss_pred cHHHHHHHHHHhHHhcC
Q 007573 420 KVNESMDLFELMVKVYG 436 (597)
Q Consensus 420 ~~~~a~~~~~~~~~~~~ 436 (597)
+.+.|.+.|+..+...+
T Consensus 118 ~~~~A~~aF~~Ai~~~~ 134 (157)
T PRK15363 118 NVCYAIKALKAVVRICG 134 (157)
T ss_pred CHHHHHHHHHHHHHHhc
Confidence 88888887777766433
No 194
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=97.26 E-value=0.0014 Score=63.43 Aligned_cols=65 Identities=11% Similarity=-0.090 Sum_probs=47.0
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCc---hHHHHHHHHHhcCCcHHHHHHHHHHHhC
Q 007573 472 DTGVWGSLLAACVINLNVELGELAAKKMRELDPQNSA---VYVMLSNLYAAAGMWRDVTRVRLLMKEQ 536 (597)
Q Consensus 472 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~---~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 536 (597)
+...|+.+..+|...|++++|+..|+++++++|++.. +|.+++.+|...|+.++|++.+++..+.
T Consensus 74 ~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 74 TAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 4556777777777777777777777777777777753 3777777777777777777777777664
No 195
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=97.26 E-value=0.01 Score=47.13 Aligned_cols=91 Identities=16% Similarity=0.182 Sum_probs=66.6
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHCCCCCC--hHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCC-ChHHHHHHHHHHh
Q 007573 376 IIAAFAQHGHYEKALIFFSQMGLNGFDPD--GITFLSLLSACGHAGKVNESMDLFELMVKVYGIIP-SSEHYTCLVDILS 452 (597)
Q Consensus 376 li~~~~~~g~~~~A~~~~~~m~~~g~~p~--~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~ 452 (597)
...++-..|+.++|+.+|++....|.... ...+..+...+...|++++|..+++.....++-.+ +......+..++.
T Consensus 7 ~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L~ 86 (120)
T PF12688_consen 7 LAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALALY 86 (120)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHH
Confidence 44567778999999999999998886654 34677788889999999999999998877532211 2223333455678
Q ss_pred hcCCHHHHHHHHhh
Q 007573 453 RAGQLEKAWQITQG 466 (597)
Q Consensus 453 ~~g~~~~A~~~~~~ 466 (597)
..|+.++|.+.+-.
T Consensus 87 ~~gr~~eAl~~~l~ 100 (120)
T PF12688_consen 87 NLGRPKEALEWLLE 100 (120)
T ss_pred HCCCHHHHHHHHHH
Confidence 88999998887654
No 196
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=97.23 E-value=0.045 Score=52.00 Aligned_cols=87 Identities=11% Similarity=0.057 Sum_probs=40.7
Q ss_pred ccCcHHHHHHHHHHhHHh--cCCCCChHHHHHHHHHHhhcCCHHHHHHHHhhCCCCCCHHH---HHHHHHHHHhcCCHHH
Q 007573 417 HAGKVNESMDLFELMVKV--YGIIPSSEHYTCLVDILSRAGQLEKAWQITQGMPFEADTGV---WGSLLAACVINLNVEL 491 (597)
Q Consensus 417 ~~g~~~~a~~~~~~~~~~--~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~---~~~l~~~~~~~g~~~~ 491 (597)
+.|.+..|.+.|.+.+.. .+.+|+...|.....+..+.|++.+|+.-.++.. .-|+.. +..-..++...+++++
T Consensus 261 k~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al-~iD~syikall~ra~c~l~le~~e~ 339 (486)
T KOG0550|consen 261 KNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEAL-KIDSSYIKALLRRANCHLALEKWEE 339 (486)
T ss_pred hccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhh-hcCHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555555555554421 0112223344444455556666666655555443 222221 2222233445556666
Q ss_pred HHHHHHHHHhcCC
Q 007573 492 GELAAKKMRELDP 504 (597)
Q Consensus 492 a~~~~~~~~~~~p 504 (597)
|++.++++.+...
T Consensus 340 AV~d~~~a~q~~~ 352 (486)
T KOG0550|consen 340 AVEDYEKAMQLEK 352 (486)
T ss_pred HHHHHHHHHhhcc
Confidence 6666666665443
No 197
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=97.23 E-value=0.0058 Score=46.71 Aligned_cols=80 Identities=14% Similarity=0.246 Sum_probs=65.3
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHCCC-CCChHHHHHHHHHHhccC--------cHHHHHHHHHHhHHhcCCCCChHH
Q 007573 373 WNTIIAAFAQHGHYEKALIFFSQMGLNGF-DPDGITFLSLLSACGHAG--------KVNESMDLFELMVKVYGIIPSSEH 443 (597)
Q Consensus 373 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~~~~~~~ll~~~~~~g--------~~~~a~~~~~~~~~~~~~~p~~~~ 443 (597)
-...|..+...+++...-.+|+.+++.|+ .|+..+|+.++.+..+.. ++-+.+.+|+.|... +++|+.++
T Consensus 28 ~i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~-~lKP~~et 106 (120)
T PF08579_consen 28 QIDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSN-KLKPNDET 106 (120)
T ss_pred HHHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHh-ccCCcHHH
Confidence 34456667777999999999999999999 899999999998876532 345677889999886 89999999
Q ss_pred HHHHHHHHhh
Q 007573 444 YTCLVDILSR 453 (597)
Q Consensus 444 ~~~l~~~~~~ 453 (597)
|+.++..+.+
T Consensus 107 Ynivl~~Llk 116 (120)
T PF08579_consen 107 YNIVLGSLLK 116 (120)
T ss_pred HHHHHHHHHH
Confidence 9998877654
No 198
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=97.20 E-value=0.0042 Score=60.85 Aligned_cols=115 Identities=15% Similarity=0.042 Sum_probs=54.2
Q ss_pred CCCCCHHHHHHHHHHHhccchhHHHHHHHHHHHHhC--CCCcccHHHHHHHHHHhcCCHHHHHHHHhccC----CCChhh
Q 007573 299 DMQPDDATLVSVFTACSALQLLNEGRQSHVLVIRNG--FEANVSVCNAVITMYSRCGGILDSELAFRQIH----SPNLVS 372 (597)
Q Consensus 299 g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~----~~~~~~ 372 (597)
+.+.+...+..+++.+....+++.+..++-...... ...-..+..+++..|.+.|..+.+..+++.=. =||..+
T Consensus 61 ~~~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s 140 (429)
T PF10037_consen 61 KKPVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFS 140 (429)
T ss_pred CCCCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhh
Confidence 345566666667777777777777666665554431 11122233344444444444444444443322 144444
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCChHHHHHHHH
Q 007573 373 WNTIIAAFAQHGHYEKALIFFSQMGLNGFDPDGITFLSLLS 413 (597)
Q Consensus 373 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~ 413 (597)
+|.++..+.+.|++..|.++...|...+...+..|+...+.
T Consensus 141 ~n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~ 181 (429)
T PF10037_consen 141 FNLLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALY 181 (429)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHH
Confidence 44444444444444444444444444333333333333333
No 199
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.19 E-value=0.041 Score=48.95 Aligned_cols=134 Identities=7% Similarity=-0.016 Sum_probs=97.3
Q ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChH-----HHHH
Q 007573 372 SWNTIIAAFAQHGHYEKALIFFSQMGLNGFDPDGITFLSLLSACGHAGKVNESMDLFELMVKVYGIIPSSE-----HYTC 446 (597)
Q Consensus 372 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~-----~~~~ 446 (597)
.-+.++..+...|.+.-.+.++++.++...+.++.....+++.-.+.|+.+.|...|+...+. .-+.+.. +...
T Consensus 179 Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~-~~kL~~~q~~~~V~~n 257 (366)
T KOG2796|consen 179 VMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKV-TQKLDGLQGKIMVLMN 257 (366)
T ss_pred HHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHH-HhhhhccchhHHHHhh
Confidence 445667777778888899999999998766667788888888888999999999999977665 2233322 3333
Q ss_pred HHHHHhhcCCHHHHHHHHhhCC-CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC
Q 007573 447 LVDILSRAGQLEKAWQITQGMP-FEA-DTGVWGSLLAACVINLNVELGELAAKKMRELDPQN 506 (597)
Q Consensus 447 l~~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~ 506 (597)
....|.-++++.+|...+.+++ ..| ++...|.-.-+..-.|+...|++..+.+++..|.+
T Consensus 258 ~a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~~P~~ 319 (366)
T KOG2796|consen 258 SAFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLYLGKLKDALKQLEAMVQQDPRH 319 (366)
T ss_pred hhhheecccchHHHHHHHhhccccCCCchhhhchHHHHHHHHHHHHHHHHHHHHHhccCCcc
Confidence 3445666778888888888877 233 44444554445556788888999999999988876
No 200
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=97.16 E-value=0.00082 Score=42.69 Aligned_cols=42 Identities=19% Similarity=0.253 Sum_probs=37.3
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHH
Q 007573 474 GVWGSLLAACVINLNVELGELAAKKMRELDPQNSAVYVMLSN 515 (597)
Q Consensus 474 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 515 (597)
.+|..+...|...|++++|++.++++++.+|+++.++..++.
T Consensus 2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La~ 43 (44)
T PF13428_consen 2 AAWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALAQ 43 (44)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhhh
Confidence 467788999999999999999999999999999988877764
No 201
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=97.16 E-value=0.26 Score=47.58 Aligned_cols=87 Identities=7% Similarity=0.182 Sum_probs=68.7
Q ss_pred HHHHhhcCC--CCcchHHHHHHHHHhCCChhHHHHHHhhCCCC---CcchHHHHHHHHHcCCChHHHHHHHccCC--CCC
Q 007573 70 RQLFDQMTT--KDVITWNAIITGYWQNGFLQESKNLFQSMPVK---NIVSWNCMIAGCIDNDRIDDAFDYFQAMP--ERN 142 (597)
Q Consensus 70 ~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~ll~~~~~~~~~~~A~~~~~~~~--~~~ 142 (597)
.++-+++.. .|+.+|-.||.-|..+|..++..+.+++|..| -..+|...+++-...+++.....+|.+.. .-+
T Consensus 29 lrLRerIkdNPtnI~S~fqLiq~~~tq~s~~~~re~yeq~~~pfp~~~~aw~ly~s~ELA~~df~svE~lf~rCL~k~l~ 108 (660)
T COG5107 29 LRLRERIKDNPTNILSYFQLIQYLETQESMDAEREMYEQLSSPFPIMEHAWRLYMSGELARKDFRSVESLFGRCLKKSLN 108 (660)
T ss_pred HHHHHHhhcCchhHHHHHHHHHHHhhhhhHHHHHHHHHHhcCCCccccHHHHHHhcchhhhhhHHHHHHHHHHHHhhhcc
Confidence 355566655 46678999999999999999999999999987 45678888888888889999999998887 346
Q ss_pred hhhHHHHHHHHHcC
Q 007573 143 TATYNAMISGFLKH 156 (597)
Q Consensus 143 ~~~~~~l~~~~~~~ 156 (597)
...|...+.--.+.
T Consensus 109 ldLW~lYl~YIRr~ 122 (660)
T COG5107 109 LDLWMLYLEYIRRV 122 (660)
T ss_pred HhHHHHHHHHHHhh
Confidence 67777666644443
No 202
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=97.16 E-value=0.0037 Score=59.20 Aligned_cols=87 Identities=15% Similarity=0.089 Sum_probs=71.3
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCcHHHHHHHHHHHhCCCccCCCeeEEEECCE
Q 007573 473 TGVWGSLLAACVINLNVELGELAAKKMRELDPQNSAVYVMLSNLYAAAGMWRDVTRVRLLMKEQGVTKQCAYSWIEIGNK 552 (597)
Q Consensus 473 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~s~~~~~~~ 552 (597)
..++..|..+|.+.+++..|+....++++++|+|..++..-+.+|...|+++.|+..|+++.+.
T Consensus 257 ~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~---------------- 320 (397)
T KOG0543|consen 257 LACHLNLAACYLKLKEYKEAIESCNKVLELDPNNVKALYRRGQALLALGEYDLARDDFQKALKL---------------- 320 (397)
T ss_pred HHHhhHHHHHHHhhhhHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHh----------------
Confidence 3456777778889999999999999999999999999999999999999999999999998763
Q ss_pred EEEEEeCCCCCcchHHHHHHHHHHHHHHhhcCC
Q 007573 553 VHYFLGGDMSHPCIDKIHLELKRASVQMKSVDD 585 (597)
Q Consensus 553 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~ 585 (597)
.|.+..+-..|..+..++++...
T Consensus 321 ----------~P~Nka~~~el~~l~~k~~~~~~ 343 (397)
T KOG0543|consen 321 ----------EPSNKAARAELIKLKQKIREYEE 343 (397)
T ss_pred ----------CCCcHHHHHHHHHHHHHHHHHHH
Confidence 45666777777777766655443
No 203
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.12 E-value=0.27 Score=46.98 Aligned_cols=104 Identities=17% Similarity=0.218 Sum_probs=58.0
Q ss_pred HHHHHhcCCHHHHHHHHhccCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHhccCcHHHHH
Q 007573 346 ITMYSRCGGILDSELAFRQIHSPNLVSWNTIIAAFAQHGHYEKALIFFSQMGLNGFDPDGITFLSLLSACGHAGKVNESM 425 (597)
Q Consensus 346 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~ 425 (597)
+.-+...|+...|.++-.+..-|+-.-|-..+.+++..+++++-..+... +-.+.-|..++.+|.+.|...+|.
T Consensus 184 i~~li~~~~~k~A~kl~k~Fkv~dkrfw~lki~aLa~~~~w~eL~~fa~s------kKsPIGyepFv~~~~~~~~~~eA~ 257 (319)
T PF04840_consen 184 IRKLIEMGQEKQAEKLKKEFKVPDKRFWWLKIKALAENKDWDELEKFAKS------KKSPIGYEPFVEACLKYGNKKEAS 257 (319)
T ss_pred HHHHHHCCCHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCCHHHHHHHHhC------CCCCCChHHHHHHHHHCCCHHHHH
Confidence 44445556666666666666666666666666666666666655544321 112355566666666666666666
Q ss_pred HHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHhh
Q 007573 426 DLFELMVKVYGIIPSSEHYTCLVDILSRAGQLEKAWQITQG 466 (597)
Q Consensus 426 ~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~ 466 (597)
.+...+. +..-+..|.++|++.+|.+.--+
T Consensus 258 ~yI~k~~-----------~~~rv~~y~~~~~~~~A~~~A~~ 287 (319)
T PF04840_consen 258 KYIPKIP-----------DEERVEMYLKCGDYKEAAQEAFK 287 (319)
T ss_pred HHHHhCC-----------hHHHHHHHHHCCCHHHHHHHHHH
Confidence 5554321 12344556666666666555333
No 204
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=97.12 E-value=0.0018 Score=46.79 Aligned_cols=64 Identities=14% Similarity=0.151 Sum_probs=52.3
Q ss_pred HHHHhhcCCHHHHHHHHhhCC-CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHH
Q 007573 448 VDILSRAGQLEKAWQITQGMP-FEA-DTGVWGSLLAACVINLNVELGELAAKKMRELDPQNSAVYV 511 (597)
Q Consensus 448 ~~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~ 511 (597)
..+|.+.+++++|.++++.+. ..| +...|......+...|++++|...++++++..|+++....
T Consensus 2 ~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~~ 67 (73)
T PF13371_consen 2 KQIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDDPDARA 67 (73)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHHHHH
Confidence 356788899999999998876 445 5567888888899999999999999999999998766443
No 205
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=97.09 E-value=0.014 Score=50.73 Aligned_cols=105 Identities=19% Similarity=0.216 Sum_probs=69.5
Q ss_pred CCCHHHHHHHHHHHh-----ccchhHHHHHHHHHHHHhCCCCcccHHHHHHHHHHhcCCHHHHHHHHhccCCCChhhHHH
Q 007573 301 QPDDATLVSVFTACS-----ALQLLNEGRQSHVLVIRNGFEANVSVCNAVITMYSRCGGILDSELAFRQIHSPNLVSWNT 375 (597)
Q Consensus 301 ~p~~~~~~~ll~~~~-----~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 375 (597)
..|..+|..++..+. +.|..+-....+..|.+.|+.-|..+|+.|++.+=+ |.+- -.. .+.+
T Consensus 44 ~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPK-g~fv-p~n-----------~fQ~ 110 (228)
T PF06239_consen 44 AKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPK-GKFV-PRN-----------FFQA 110 (228)
T ss_pred cccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCC-CCcc-ccc-----------HHHH
Confidence 345555555555554 346666667777788888888888888888887754 2211 000 1111
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHhccCc
Q 007573 376 IIAAFAQHGHYEKALIFFSQMGLNGFDPDGITFLSLLSACGHAGK 420 (597)
Q Consensus 376 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~ 420 (597)
+..-| -.+.+-|++++++|...|+-||..|+..++..+.+.+.
T Consensus 111 ~F~hy--p~Qq~c~i~lL~qME~~gV~Pd~Et~~~ll~iFG~~s~ 153 (228)
T PF06239_consen 111 EFMHY--PRQQECAIDLLEQMENNGVMPDKETEQMLLNIFGRKSH 153 (228)
T ss_pred HhccC--cHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHhccccH
Confidence 11111 23457789999999999999999999999999977664
No 206
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.07 E-value=0.48 Score=48.92 Aligned_cols=82 Identities=17% Similarity=0.172 Sum_probs=38.5
Q ss_pred HHHHHHHcCCChHHHHHHHccCCCCC---hhhHHHHHHHHHcCC---ChHHHHHHHccCCC--CCchhHHHHHHHHHhCC
Q 007573 117 CMIAGCIDNDRIDDAFDYFQAMPERN---TATYNAMISGFLKHG---RLEEATRLFEQMPR--RNVISYTAMLDGFMKKG 188 (597)
Q Consensus 117 ~ll~~~~~~~~~~~A~~~~~~~~~~~---~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~g 188 (597)
.++.-+...+.+..|.++-..+..|. ..+|......+.+.. +.+.+..+-+++.. ...++|..+.+.-...|
T Consensus 442 ~vi~Rl~~r~~Y~vaIQva~~l~~p~~~~~~Vl~~Wa~~kI~~~d~~d~~vld~I~~kls~~~~~~iSy~~iA~~Ay~~G 521 (829)
T KOG2280|consen 442 VVIDRLVDRHLYSVAIQVAKLLNLPESQGDRVLLEWARRKIKQSDKMDEEVLDKIDEKLSAKLTPGISYAAIARRAYQEG 521 (829)
T ss_pred hhhHHHHhcchhHHHHHHHHHhCCccccccHHHHHHHHHHHhccCccchHHHHHHHHHhcccCCCceeHHHHHHHHHhcC
Confidence 44444555555666666555555333 344444444444442 12222222233332 23445555555555556
Q ss_pred ChhHHHHHHH
Q 007573 189 EVDKARALSD 198 (597)
Q Consensus 189 ~~~~A~~~~~ 198 (597)
+.+-|..+++
T Consensus 522 R~~LA~kLle 531 (829)
T KOG2280|consen 522 RFELARKLLE 531 (829)
T ss_pred cHHHHHHHHh
Confidence 6665555543
No 207
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.05 E-value=0.033 Score=49.50 Aligned_cols=131 Identities=14% Similarity=0.043 Sum_probs=104.1
Q ss_pred HHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHhhCC--------CCCCHHHHHH
Q 007573 407 TFLSLLSACGHAGKVNESMDLFELMVKVYGIIPSSEHYTCLVDILSRAGQLEKAWQITQGMP--------FEADTGVWGS 478 (597)
Q Consensus 407 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--------~~p~~~~~~~ 478 (597)
..+.++..+.-.|.+.-....+++.++. .-+.++.....|+.+--..|+.+.|...|+... ...+..+...
T Consensus 179 Vmy~~~~~llG~kEy~iS~d~~~~vi~~-~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n 257 (366)
T KOG2796|consen 179 VMYSMANCLLGMKEYVLSVDAYHSVIKY-YPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMN 257 (366)
T ss_pred HHHHHHHHHhcchhhhhhHHHHHHHHHh-CCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhh
Confidence 3455666777778888888999998874 445567788889998899999999999998553 1222223333
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCcHHHHHHHHHHHhCCC
Q 007573 479 LLAACVINLNVELGELAAKKMRELDPQNSAVYVMLSNLYAAAGMWRDVTRVRLLMKEQGV 538 (597)
Q Consensus 479 l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 538 (597)
....+.-++++..|...+.++++.+|.++.+.+.-+-++.-.|+..+|++..+.|++..+
T Consensus 258 ~a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~~P 317 (366)
T KOG2796|consen 258 SAFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLYLGKLKDALKQLEAMVQQDP 317 (366)
T ss_pred hhhheecccchHHHHHHHhhccccCCCchhhhchHHHHHHHHHHHHHHHHHHHHHhccCC
Confidence 444567788999999999999999999999999888888899999999999999987654
No 208
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=97.04 E-value=0.072 Score=51.27 Aligned_cols=159 Identities=18% Similarity=0.078 Sum_probs=91.3
Q ss_pred HHHHHHHhcCCHHHHHHHHhccCCC-------ChhhHHHHHHHHHH---cCCHHHHHHHHHHHHHCCCCCChHHHHHHHH
Q 007573 344 AVITMYSRCGGILDSELAFRQIHSP-------NLVSWNTIIAAFAQ---HGHYEKALIFFSQMGLNGFDPDGITFLSLLS 413 (597)
Q Consensus 344 ~l~~~~~~~g~~~~A~~~~~~~~~~-------~~~~~~~li~~~~~---~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~ 413 (597)
.++-+|....+++..+++.+.+... ....--...-++.+ .|+.++|++++..+....-.+++.++..+..
T Consensus 146 ~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~GR 225 (374)
T PF13281_consen 146 NLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLLGR 225 (374)
T ss_pred HHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHHHH
Confidence 4445677778888888888777632 11111223334455 7888888888888665555777777776666
Q ss_pred HHhc---------cCcHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHH----HHHHHH---hhC-----C--CC
Q 007573 414 ACGH---------AGKVNESMDLFELMVKVYGIIPSSEHYTCLVDILSRAGQLE----KAWQIT---QGM-----P--FE 470 (597)
Q Consensus 414 ~~~~---------~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~----~A~~~~---~~~-----~--~~ 470 (597)
.|-. ....++|...|.+.- .+.|+..+--.++..+...|... +..++- ..+ . ..
T Consensus 226 IyKD~~~~s~~~d~~~ldkAi~~Y~kgF---e~~~~~Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg~~~~~ 302 (374)
T PF13281_consen 226 IYKDLFLESNFTDRESLDKAIEWYRKGF---EIEPDYYSGINAATLLMLAGHDFETSEELRKIGVKLSSLLGRKGSLEKM 302 (374)
T ss_pred HHHHHHHHcCccchHHHHHHHHHHHHHH---cCCccccchHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhhcccccc
Confidence 5411 223666776666543 44455433333333343344211 222222 110 0 22
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 007573 471 ADTGVWGSLLAACVINLNVELGELAAKKMRELDPQ 505 (597)
Q Consensus 471 p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~ 505 (597)
.+-..+.+++.++.-.|+.++|.+.++++.++.|+
T Consensus 303 ~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l~~~ 337 (374)
T PF13281_consen 303 QDYWDVATLLEASVLAGDYEKAIQAAEKAFKLKPP 337 (374)
T ss_pred ccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCc
Confidence 34445667777777788888888888888877655
No 209
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=97.00 E-value=0.06 Score=54.02 Aligned_cols=180 Identities=13% Similarity=0.112 Sum_probs=108.1
Q ss_pred HHHHHHHHHHHcCC--hhHHHHHHHHhHHCCCCCCHHHHHHHHHHHhccchhHHHHHHHHHHHHhCCCCcccHHHHHHHH
Q 007573 271 SFNAMIAGYAQNGV--AEEALRLFSGMIKMDMQPDDATLVSVFTACSALQLLNEGRQSHVLVIRNGFEANVSVCNAVITM 348 (597)
Q Consensus 271 ~~~~li~~~~~~g~--~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 348 (597)
.++..=.+|.+..+ +-+.+.-+++|.+.|-.|+... +...|+-.|.+.+|.++|.+ .|. -|..+.+
T Consensus 600 ~f~~ARkAY~rVRdl~~L~li~EL~~~k~rge~P~~iL---lA~~~Ay~gKF~EAAklFk~---~G~------enRAlEm 667 (1081)
T KOG1538|consen 600 DFETARKAYIRVRDLRYLELISELEERKKRGETPNDLL---LADVFAYQGKFHEAAKLFKR---SGH------ENRALEM 667 (1081)
T ss_pred hhHHHHHHHHHHhccHHHHHHHHHHHHHhcCCCchHHH---HHHHHHhhhhHHHHHHHHHH---cCc------hhhHHHH
Confidence 34455556666544 4456667788888898898764 34557778889888888754 332 2445667
Q ss_pred HHhcCCHHHHHHHHhccCC--------------CChhhHHHHHHHHHHcCCHHHHHHHHHH------HHHCCCC---CCh
Q 007573 349 YSRCGGILDSELAFRQIHS--------------PNLVSWNTIIAAFAQHGHYEKALIFFSQ------MGLNGFD---PDG 405 (597)
Q Consensus 349 ~~~~g~~~~A~~~~~~~~~--------------~~~~~~~~li~~~~~~g~~~~A~~~~~~------m~~~g~~---p~~ 405 (597)
|.....++.|.+++..... .++.-=.+....+...|+.++|..+.-+ +.+-+-+ .+.
T Consensus 668 yTDlRMFD~aQE~~~~g~~~eKKmL~RKRA~WAr~~kePkaAAEmLiSaGe~~KAi~i~~d~gW~d~lidI~rkld~~er 747 (1081)
T KOG1538|consen 668 YTDLRMFDYAQEFLGSGDPKEKKMLIRKRADWARNIKEPKAAAEMLISAGEHVKAIEICGDHGWVDMLIDIARKLDKAER 747 (1081)
T ss_pred HHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHhhhcCCcHHHHHHhhcccchhhhhhhhhcccHHHHHHHHHhhcchhhh
Confidence 7777777777777755431 0111111223344556776666655321 1111112 223
Q ss_pred HHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHhhCC-CCCC
Q 007573 406 ITFLSLLSACGHAGKVNESMDLFELMVKVYGIIPSSEHYTCLVDILSRAGQLEKAWQITQGMP-FEAD 472 (597)
Q Consensus 406 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p~ 472 (597)
.+...+..-+.+...+..|-++|..|-. ...++++....+++.+|..+-+..+ ..||
T Consensus 748 e~l~~~a~ylk~l~~~gLAaeIF~k~gD----------~ksiVqlHve~~~W~eAFalAe~hPe~~~d 805 (1081)
T KOG1538|consen 748 EPLLLCATYLKKLDSPGLAAEIFLKMGD----------LKSLVQLHVETQRWDEAFALAEKHPEFKDD 805 (1081)
T ss_pred hHHHHHHHHHhhccccchHHHHHHHhcc----------HHHHhhheeecccchHhHhhhhhCcccccc
Confidence 4444444555566667777777776632 2456778888899999999888877 4444
No 210
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=96.99 E-value=0.012 Score=54.47 Aligned_cols=102 Identities=8% Similarity=0.007 Sum_probs=67.8
Q ss_pred HHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCC-hHHHHHHHHHHhhcCCHHHHHHHHhhCC-CCCC----HHHHHHHH
Q 007573 407 TFLSLLSACGHAGKVNESMDLFELMVKVYGIIPS-SEHYTCLVDILSRAGQLEKAWQITQGMP-FEAD----TGVWGSLL 480 (597)
Q Consensus 407 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p~----~~~~~~l~ 480 (597)
.|...+....+.|++++|...|+.+.+.+.-.+- +..+-.+...|...|++++|...|+.+. ..|+ ...+..++
T Consensus 145 ~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg 224 (263)
T PRK10803 145 DYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVG 224 (263)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHH
Confidence 3444444445567777777777777765422211 3455667777777788888877777664 2232 34555566
Q ss_pred HHHHhcCCHHHHHHHHHHHHhcCCCCCc
Q 007573 481 AACVINLNVELGELAAKKMRELDPQNSA 508 (597)
Q Consensus 481 ~~~~~~g~~~~a~~~~~~~~~~~p~~~~ 508 (597)
..+...|+.++|...++++++..|++..
T Consensus 225 ~~~~~~g~~~~A~~~~~~vi~~yP~s~~ 252 (263)
T PRK10803 225 VIMQDKGDTAKAKAVYQQVIKKYPGTDG 252 (263)
T ss_pred HHHHHcCCHHHHHHHHHHHHHHCcCCHH
Confidence 7777889999999999999998888653
No 211
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=96.97 E-value=0.0026 Score=46.59 Aligned_cols=62 Identities=8% Similarity=0.001 Sum_probs=45.7
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhc----CCCC---CchHHHHHHHHHhcCCcHHHHHHHHHHHh
Q 007573 474 GVWGSLLAACVINLNVELGELAAKKMREL----DPQN---SAVYVMLSNLYAAAGMWRDVTRVRLLMKE 535 (597)
Q Consensus 474 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~p~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 535 (597)
.+++.+...|...|++++|+..+++++++ ++++ ..++..++.+|...|++++|.+.+++..+
T Consensus 6 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~ 74 (78)
T PF13424_consen 6 NAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALD 74 (78)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 36677777788888888888888888754 2222 45677888888888888888888887654
No 212
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=96.97 E-value=0.36 Score=45.81 Aligned_cols=272 Identities=14% Similarity=0.108 Sum_probs=163.1
Q ss_pred cCCHHHHHHHHhhcC---CCChhHHHHHHHH--HHHcCChhHHHHHHHHhHHCCCCCCHH--HHHHHHHHHhccchhHHH
Q 007573 251 VGMLENARLLFERIQ---PKDCVSFNAMIAG--YAQNGVAEEALRLFSGMIKMDMQPDDA--TLVSVFTACSALQLLNEG 323 (597)
Q Consensus 251 ~g~~~~A~~~~~~~~---~~~~~~~~~li~~--~~~~g~~~~A~~~~~~m~~~g~~p~~~--~~~~ll~~~~~~~~~~~a 323 (597)
.|+-..|.+.-.+.. ..|....-.++.+ -.-.|+++.|.+-|+.|.. .|... ....+.-..-+.|+.+.+
T Consensus 97 AGda~lARkmt~~~~~llssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~---dPEtRllGLRgLyleAqr~GareaA 173 (531)
T COG3898 97 AGDASLARKMTARASKLLSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLD---DPETRLLGLRGLYLEAQRLGAREAA 173 (531)
T ss_pred cCchHHHHHHHHHHHhhhhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhc---ChHHHHHhHHHHHHHHHhcccHHHH
Confidence 345555554444322 2343333333332 2335777777777777764 22221 122333333466777777
Q ss_pred HHHHHHHHHhCCCCcccHHHHHHHHHHhcCCHHHHHHHHhccC-----CCChh--hHHHHHHHHH---HcCCHHHHHHHH
Q 007573 324 RQSHVLVIRNGFEANVSVCNAVITMYSRCGGILDSELAFRQIH-----SPNLV--SWNTIIAAFA---QHGHYEKALIFF 393 (597)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-----~~~~~--~~~~li~~~~---~~g~~~~A~~~~ 393 (597)
.++-+..-..- +.-.....+.+...+..|+++.|+++.+.-. +++.. .-..|+.+-+ -.-+...|...-
T Consensus 174 r~yAe~Aa~~A-p~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp~~Ar~~A 252 (531)
T COG3898 174 RHYAERAAEKA-PQLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDADPASARDDA 252 (531)
T ss_pred HHHHHHHHhhc-cCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCChHHHHHHH
Confidence 76666554443 3335566777788888888888888876543 34433 1222222211 133466666665
Q ss_pred HHHHHCCCCCChH-HHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHH--HH--HHhhCC
Q 007573 394 SQMGLNGFDPDGI-TFLSLLSACGHAGKVNESMDLFELMVKVYGIIPSSEHYTCLVDILSRAGQLEKA--WQ--ITQGMP 468 (597)
Q Consensus 394 ~~m~~~g~~p~~~-~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A--~~--~~~~~~ 468 (597)
.+..+ +.||-. .-.....++.+.|++.++-.+++.+-+. .|.+..... ..+.+.|+.... .+ -++.|.
T Consensus 253 ~~a~K--L~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~---ePHP~ia~l--Y~~ar~gdta~dRlkRa~~L~slk 325 (531)
T COG3898 253 LEANK--LAPDLVPAAVVAARALFRDGNLRKGSKILETAWKA---EPHPDIALL--YVRARSGDTALDRLKRAKKLESLK 325 (531)
T ss_pred HHHhh--cCCccchHHHHHHHHHHhccchhhhhhHHHHHHhc---CCChHHHHH--HHHhcCCCcHHHHHHHHHHHHhcC
Confidence 55544 467643 3344457888999999999999988754 555555433 334566653322 11 123333
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhc-CCcHHHHHHHHHHHh
Q 007573 469 FEADTGVWGSLLAACVINLNVELGELAAKKMRELDPQNSAVYVMLSNLYAAA-GMWRDVTRVRLLMKE 535 (597)
Q Consensus 469 ~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~-g~~~~A~~~~~~~~~ 535 (597)
+.+......+..+-...|++..|..-.+.+....|. ...|..|+++-... |+-.++...+-+..+
T Consensus 326 -~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r~~pr-es~~lLlAdIeeAetGDqg~vR~wlAqav~ 391 (531)
T COG3898 326 -PNNAESSLAVAEAALDAGEFSAARAKAEAAAREAPR-ESAYLLLADIEEAETGDQGKVRQWLAQAVK 391 (531)
T ss_pred -ccchHHHHHHHHHHHhccchHHHHHHHHHHhhhCch-hhHHHHHHHHHhhccCchHHHHHHHHHHhc
Confidence 334556777778888999999999999999998887 55688888886665 999998888776654
No 213
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.96 E-value=0.6 Score=48.23 Aligned_cols=321 Identities=10% Similarity=0.057 Sum_probs=155.3
Q ss_pred HHHHHHHHhCCChhHHHHHHHhcccCC---cchHHHHHHHHHcCCC---hHHHHHHHhhcCCCCCCchHHHHHHHHHHhc
Q 007573 178 TAMLDGFMKKGEVDKARALSDYMSFKN---VVSWTVMITGYVKNER---FCEARELFYRMPDYDKNVFVVTAMITGFCKV 251 (597)
Q Consensus 178 ~~li~~~~~~g~~~~A~~~~~~m~~~~---~~~~~~ll~~~~~~g~---~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~ 251 (597)
..+|+-+...+.+..|+++-..+..|. ...|.....-+.+..+ -+-+..+-+++...--....|..++.-...+
T Consensus 441 ~~vi~Rl~~r~~Y~vaIQva~~l~~p~~~~~~Vl~~Wa~~kI~~~d~~d~~vld~I~~kls~~~~~~iSy~~iA~~Ay~~ 520 (829)
T KOG2280|consen 441 EVVIDRLVDRHLYSVAIQVAKLLNLPESQGDRVLLEWARRKIKQSDKMDEEVLDKIDEKLSAKLTPGISYAAIARRAYQE 520 (829)
T ss_pred hhhhHHHHhcchhHHHHHHHHHhCCccccccHHHHHHHHHHHhccCccchHHHHHHHHHhcccCCCceeHHHHHHHHHhc
Confidence 345666677777777777777776654 4445555555554422 2222222222222112334556666666677
Q ss_pred CCHHHHHHHHhhcCCC--------ChhHHHHHHHHHHHcCChhHHHHHHHHhHHCCCCCCHHHHHHHHHHHhccchhHHH
Q 007573 252 GMLENARLLFERIQPK--------DCVSFNAMIAGYAQNGVAEEALRLFSGMIKMDMQPDDATLVSVFTACSALQLLNEG 323 (597)
Q Consensus 252 g~~~~A~~~~~~~~~~--------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a 323 (597)
|+.+-|..+++.=+.. +..-+...+.-..+.|+.+-...++..+.++ -+...|...+ .+...|
T Consensus 521 GR~~LA~kLle~E~~~~~qV~lLL~m~~~~~AL~kaies~d~~Li~~Vllhlk~~---~~~s~l~~~l------~~~p~a 591 (829)
T KOG2280|consen 521 GRFELARKLLELEPRSGEQVPLLLKMKDSSLALKKAIESGDTDLIIQVLLHLKNK---LNRSSLFMTL------RNQPLA 591 (829)
T ss_pred CcHHHHHHHHhcCCCccchhHHHhccchHHHHHHHHHhcCCchhHHHHHHHHHHH---HHHHHHHHHH------Hhchhh
Confidence 7777777777643321 1123445555566667776666666655542 1111111111 112223
Q ss_pred HHHHHHHHHhCCCCcccHHHHHHHHHHhcCCHHHHHHHH--hccC-----CCChhhHHHHHHHHHHcCC----------H
Q 007573 324 RQSHVLVIRNGFEANVSVCNAVITMYSRCGGILDSELAF--RQIH-----SPNLVSWNTIIAAFAQHGH----------Y 386 (597)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~--~~~~-----~~~~~~~~~li~~~~~~g~----------~ 386 (597)
..++.+..+..-. ..+-+.|.. ++...+...| +... ++-..........+.+... .
T Consensus 592 ~~lY~~~~r~~~~------~~l~d~y~q-~dn~~~~a~~~~q~~~~~~~~~~r~~~lk~~a~~~a~sk~~s~e~ka~ed~ 664 (829)
T KOG2280|consen 592 LSLYRQFMRHQDR------ATLYDFYNQ-DDNHQALASFHLQASYAAETIEGRIPALKTAANAFAKSKEKSFEAKALEDQ 664 (829)
T ss_pred hHHHHHHHHhhch------hhhhhhhhc-ccchhhhhhhhhhhhhhhhhhcccchhHHHHHHHHhhhhhhhhHHHHHHHH
Confidence 3333333221100 001111111 1111111111 1100 0001111112222222211 1
Q ss_pred HHHHHHHHHHHH-CCCCCChHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHh
Q 007573 387 EKALIFFSQMGL-NGFDPDGITFLSLLSACGHAGKVNESMDLFELMVKVYGIIPSSEHYTCLVDILSRAGQLEKAWQITQ 465 (597)
Q Consensus 387 ~~A~~~~~~m~~-~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~ 465 (597)
.+-+.+.+.+.. .|..-...+.+-.+.-+...|+..+|.++-.+. . -||...|..=+.+++..+++++-+++-+
T Consensus 665 ~kLl~lQ~~Le~q~~~~f~dlSl~dTv~~li~~g~~k~a~ql~~~F----k-ipdKr~~wLk~~aLa~~~kweeLekfAk 739 (829)
T KOG2280|consen 665 MKLLKLQRTLEDQFGGSFVDLSLHDTVTTLILIGQNKRAEQLKSDF----K-IPDKRLWWLKLTALADIKKWEELEKFAK 739 (829)
T ss_pred HHHHHHHHHHHHHhccccccCcHHHHHHHHHHccchHHHHHHHHhc----C-CcchhhHHHHHHHHHhhhhHHHHHHHHh
Confidence 112222222221 232333445555555666677777777664433 2 3666677667777777788877777776
Q ss_pred hCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCcHHHHHHH
Q 007573 466 GMPFEADTGVWGSLLAACVINLNVELGELAAKKMRELDPQNSAVYVMLSNLYAAAGMWRDVTRVR 530 (597)
Q Consensus 466 ~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~ 530 (597)
... .+.-|.-+..+|.+.|+.++|.+++-+.-. +.-...+|.+.|++.+|.+.-
T Consensus 740 skk---sPIGy~PFVe~c~~~~n~~EA~KYiprv~~--------l~ekv~ay~~~~~~~eAad~A 793 (829)
T KOG2280|consen 740 SKK---SPIGYLPFVEACLKQGNKDEAKKYIPRVGG--------LQEKVKAYLRVGDVKEAADLA 793 (829)
T ss_pred ccC---CCCCchhHHHHHHhcccHHHHhhhhhccCC--------hHHHHHHHHHhccHHHHHHHH
Confidence 654 245566677777788888877777655421 125566777777777777653
No 214
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=96.95 E-value=0.42 Score=46.34 Aligned_cols=62 Identities=10% Similarity=0.050 Sum_probs=52.9
Q ss_pred CHHHHHHHHHH--HHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCcHHHHHHHHHHH
Q 007573 472 DTGVWGSLLAA--CVINLNVELGELAAKKMRELDPQNSAVYVMLSNLYAAAGMWRDVTRVRLLMK 534 (597)
Q Consensus 472 ~~~~~~~l~~~--~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 534 (597)
+...-|.|..+ ...+|++.++.-.-.-+.+..| ++.+|..+|-++....++++|..++..+.
T Consensus 459 e~eian~LaDAEyLysqgey~kc~~ys~WL~~iaP-S~~~~RLlGl~l~e~k~Y~eA~~~l~~LP 522 (549)
T PF07079_consen 459 EEEIANFLADAEYLYSQGEYHKCYLYSSWLTKIAP-SPQAYRLLGLCLMENKRYQEAWEYLQKLP 522 (549)
T ss_pred HHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCC-cHHHHHHHHHHHHHHhhHHHHHHHHHhCC
Confidence 34466777776 5688999999998888889999 79999999999999999999999998653
No 215
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=96.93 E-value=0.028 Score=55.26 Aligned_cols=117 Identities=8% Similarity=0.008 Sum_probs=83.4
Q ss_pred CChhHHHHHHHHHHHcCChhHHHHHHHHhHHC--CCCCCHHHHHHHHHHHhccchhHHHHHHHHHHHHhCCCCcccHHHH
Q 007573 267 KDCVSFNAMIAGYAQNGVAEEALRLFSGMIKM--DMQPDDATLVSVFTACSALQLLNEGRQSHVLVIRNGFEANVSVCNA 344 (597)
Q Consensus 267 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 344 (597)
-+......++..+....+.+.+..++.+.... ....-..|..++++.|...|..+.+..++..-...|+=||..++|.
T Consensus 64 vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~n~ 143 (429)
T PF10037_consen 64 VSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSFNL 143 (429)
T ss_pred CcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhHHH
Confidence 35556667777777777778888888777664 2223344556888888888888888888888888888888888888
Q ss_pred HHHHHHhcCCHHHHHHHHhccC----CCChhhHHHHHHHHHHc
Q 007573 345 VITMYSRCGGILDSELAFRQIH----SPNLVSWNTIIAAFAQH 383 (597)
Q Consensus 345 l~~~~~~~g~~~~A~~~~~~~~----~~~~~~~~~li~~~~~~ 383 (597)
|++.+.+.|++..|.++...|. -.+..++...+.+|.+.
T Consensus 144 Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 144 LMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred HHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 8888888888888888877665 23444554444444443
No 216
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=96.92 E-value=0.28 Score=45.01 Aligned_cols=50 Identities=10% Similarity=0.074 Sum_probs=22.5
Q ss_pred HHhccCcHHHHHHHHHHhHHhcCCCCC-hHHHHHHHHHHhhcCCHHHHHHH
Q 007573 414 ACGHAGKVNESMDLFELMVKVYGIIPS-SEHYTCLVDILSRAGQLEKAWQI 463 (597)
Q Consensus 414 ~~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~ 463 (597)
-|.+.|.+..|..-++.+.+.+.-.|. .+....++.+|...|..++|.+.
T Consensus 184 ~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~ 234 (243)
T PRK10866 184 YYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKV 234 (243)
T ss_pred HHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHH
Confidence 344445555555555555544332222 33344444445555555444443
No 217
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=96.80 E-value=0.077 Score=47.30 Aligned_cols=161 Identities=12% Similarity=0.105 Sum_probs=86.6
Q ss_pred HHHhcCCHHHHHHHHhccCC--CC----hhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC--hHHHHHHHHHHh---
Q 007573 348 MYSRCGGILDSELAFRQIHS--PN----LVSWNTIIAAFAQHGHYEKALIFFSQMGLNGFDPD--GITFLSLLSACG--- 416 (597)
Q Consensus 348 ~~~~~g~~~~A~~~~~~~~~--~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~--~~~~~~ll~~~~--- 416 (597)
.+...|++.+|...|+.+.. |+ ....-.++.++.+.|++++|...++++++. -|+ ..-+...+.+.+
T Consensus 14 ~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~--yP~~~~~~~A~Y~~g~~~~~ 91 (203)
T PF13525_consen 14 EALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKL--YPNSPKADYALYMLGLSYYK 91 (203)
T ss_dssp HHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH---TT-TTHHHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CCCCcchhhHHHHHHHHHHH
Confidence 34455666666666666651 11 224445666777778888888887777654 222 111221221111
Q ss_pred ----------ccCcHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHhhCCCCCCHHHHHHHHHHHHhc
Q 007573 417 ----------HAGKVNESMDLFELMVKVYGIIPSSEHYTCLVDILSRAGQLEKAWQITQGMPFEADTGVWGSLLAACVIN 486 (597)
Q Consensus 417 ----------~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~ 486 (597)
..+...+|...|+.+++ -|=......+|...+..+... -...-..+...|.+.
T Consensus 92 ~~~~~~~~~~D~~~~~~A~~~~~~li~----------------~yP~S~y~~~A~~~l~~l~~~-la~~e~~ia~~Y~~~ 154 (203)
T PF13525_consen 92 QIPGILRSDRDQTSTRKAIEEFEELIK----------------RYPNSEYAEEAKKRLAELRNR-LAEHELYIARFYYKR 154 (203)
T ss_dssp HHHHHH-TT---HHHHHHHHHHHHHHH----------------H-TTSTTHHHHHHHHHHHHHH-HHHHHHHHHHHHHCT
T ss_pred hCccchhcccChHHHHHHHHHHHHHHH----------------HCcCchHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHc
Confidence 11122334444444443 333334444444443333200 001112245568899
Q ss_pred CCHHHHHHHHHHHHhcCCCC---CchHHHHHHHHHhcCCcHHHH
Q 007573 487 LNVELGELAAKKMRELDPQN---SAVYVMLSNLYAAAGMWRDVT 527 (597)
Q Consensus 487 g~~~~a~~~~~~~~~~~p~~---~~~~~~l~~~~~~~g~~~~A~ 527 (597)
|.+..|..-++.+++.-|+. ..+...++.+|.+.|..+.|.
T Consensus 155 ~~y~aA~~r~~~v~~~yp~t~~~~~al~~l~~~y~~l~~~~~a~ 198 (203)
T PF13525_consen 155 GKYKAAIIRFQYVIENYPDTPAAEEALARLAEAYYKLGLKQAAD 198 (203)
T ss_dssp T-HHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTT-HHHHH
T ss_pred ccHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhCChHHHH
Confidence 99999999999999999987 456778899999999988544
No 218
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=96.80 E-value=0.018 Score=50.02 Aligned_cols=96 Identities=22% Similarity=0.353 Sum_probs=75.0
Q ss_pred HHHhcc--CCCChhhHHHHHHHHHH-----cCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHhccC-------------
Q 007573 360 LAFRQI--HSPNLVSWNTIIAAFAQ-----HGHYEKALIFFSQMGLNGFDPDGITFLSLLSACGHAG------------- 419 (597)
Q Consensus 360 ~~~~~~--~~~~~~~~~~li~~~~~-----~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g------------- 419 (597)
..|+.. ...+-.+|..++..|.+ .|..+=....++.|.+-|+.-|..+|+.|+..+=+..
T Consensus 35 ~~f~~~~~~~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ~~F~h 114 (228)
T PF06239_consen 35 ELFERAPGQAKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGKFVPRNFFQAEFMH 114 (228)
T ss_pred HHHHHHhhccccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCcccccHHHHHhcc
Confidence 344444 35677788888887765 4677777888899999999999999999999875522
Q ss_pred ---cHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCC
Q 007573 420 ---KVNESMDLFELMVKVYGIIPSSEHYTCLVDILSRAGQ 456 (597)
Q Consensus 420 ---~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~ 456 (597)
+-+-|++++++|... |+.||.+++..+++.+++.+.
T Consensus 115 yp~Qq~c~i~lL~qME~~-gV~Pd~Et~~~ll~iFG~~s~ 153 (228)
T PF06239_consen 115 YPRQQECAIDLLEQMENN-GVMPDKETEQMLLNIFGRKSH 153 (228)
T ss_pred CcHHHHHHHHHHHHHHHc-CCCCcHHHHHHHHHHhccccH
Confidence 246688999999765 999999999999999877764
No 219
>PRK11619 lytic murein transglycosylase; Provisional
Probab=96.79 E-value=0.95 Score=48.01 Aligned_cols=114 Identities=5% Similarity=-0.059 Sum_probs=55.3
Q ss_pred cHHHHHHHHHHhHHhcCCCCC--hHHHHHHHHHHhhcCCHHHHHHHHhhCC-CCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 007573 420 KVNESMDLFELMVKVYGIIPS--SEHYTCLVDILSRAGQLEKAWQITQGMP-FEADTGVWGSLLAACVINLNVELGELAA 496 (597)
Q Consensus 420 ~~~~a~~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p~~~~~~~l~~~~~~~g~~~~a~~~~ 496 (597)
+.+.|...+........+.+. ......++......+...+|...+.... ...+...+..-+..-...++++.+...+
T Consensus 256 d~~~A~~~~~~~~~~~~~~~~~~~~~~~~lA~~~a~~~~~~~a~~w~~~~~~~~~~~~~~e~r~r~Al~~~dw~~~~~~i 335 (644)
T PRK11619 256 DAENARLMIPSLVRAQKLNEDQRQELRDIVAWRLMGNDVTDEQAKWRDDVIMRSQSTSLLERRVRMALGTGDRRGLNTWL 335 (644)
T ss_pred CHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhccCCHHHHHHHHhcccccCCcHHHHHHHHHHHHccCHHHHHHHH
Confidence 446666666655443333322 1223333333333322445555555443 1123333333333434566666665555
Q ss_pred HHHHhcCCCCCchHHHHHHHHHhcCCcHHHHHHHHHH
Q 007573 497 KKMRELDPQNSAVYVMLSNLYAAAGMWRDVTRVRLLM 533 (597)
Q Consensus 497 ~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 533 (597)
..+-+.....+....-++.++...|+.++|..+|+.+
T Consensus 336 ~~L~~~~~~~~rw~YW~aRa~~~~g~~~~A~~~~~~~ 372 (644)
T PRK11619 336 ARLPMEAKEKDEWRYWQADLLLEQGRKAEAEEILRQL 372 (644)
T ss_pred HhcCHhhccCHhhHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 5553332333555666666666667777666666665
No 220
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=96.79 E-value=0.023 Score=47.60 Aligned_cols=62 Identities=21% Similarity=0.181 Sum_probs=53.2
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCcHHHHHHHHHHHh
Q 007573 474 GVWGSLLAACVINLNVELGELAAKKMRELDPQNSAVYVMLSNLYAAAGMWRDVTRVRLLMKE 535 (597)
Q Consensus 474 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 535 (597)
.+...++..+...|++++|+..+++++..+|-+...|..++.+|...|+..+|.+.|+++.+
T Consensus 63 ~~~~~l~~~~~~~~~~~~a~~~~~~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~ 124 (146)
T PF03704_consen 63 DALERLAEALLEAGDYEEALRLLQRALALDPYDEEAYRLLMRALAAQGRRAEALRVYERYRR 124 (146)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 34566777788999999999999999999999999999999999999999999999999864
No 221
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=96.70 E-value=0.084 Score=48.42 Aligned_cols=105 Identities=13% Similarity=0.072 Sum_probs=81.4
Q ss_pred CCChHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcC---CHHHHHHHHhhCC-CCC-CHHHH
Q 007573 402 DPDGITFLSLLSACGHAGKVNESMDLFELMVKVYGIIPSSEHYTCLVDILSRAG---QLEKAWQITQGMP-FEA-DTGVW 476 (597)
Q Consensus 402 ~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~-~~p-~~~~~ 476 (597)
+-|...|..|...|...|+.+.|...|....+.. .+++..+..+..++.... ...++.++++++. .+| |....
T Consensus 153 P~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~--g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~~iral 230 (287)
T COG4235 153 PGDAEGWDLLGRAYMALGRASDALLAYRNALRLA--GDNPEILLGLAEALYYQAGQQMTAKARALLRQALALDPANIRAL 230 (287)
T ss_pred CCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCccHHHH
Confidence 4567889999999999999999999999887642 344667777777665433 4567888998876 555 45566
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCc
Q 007573 477 GSLLAACVINLNVELGELAAKKMRELDPQNSA 508 (597)
Q Consensus 477 ~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~ 508 (597)
.-|...+...|++.+|...++.+++..|.+..
T Consensus 231 ~lLA~~afe~g~~~~A~~~Wq~lL~~lp~~~~ 262 (287)
T COG4235 231 SLLAFAAFEQGDYAEAAAAWQMLLDLLPADDP 262 (287)
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHhcCCCCCc
Confidence 66777799999999999999999999887643
No 222
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=96.61 E-value=0.03 Score=53.33 Aligned_cols=95 Identities=13% Similarity=0.017 Sum_probs=78.9
Q ss_pred HHHHHHHHHHhhcCCHHHHHHHHhhCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHh
Q 007573 442 EHYTCLVDILSRAGQLEKAWQITQGMP--FEADTGVWGSLLAACVINLNVELGELAAKKMRELDPQNSAVYVMLSNLYAA 519 (597)
Q Consensus 442 ~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~ 519 (597)
.++..+.-.|.+.+++.+|++..++.. .++|.-.+-.-..+|...|+++.|+..|+++++++|.|..+-.-++.+-.+
T Consensus 258 ~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~~el~~l~~k 337 (397)
T KOG0543|consen 258 ACHLNLAACYLKLKEYKEAIESCNKVLELDPNNVKALYRRGQALLALGEYDLARDDFQKALKLEPSNKAARAELIKLKQK 337 (397)
T ss_pred HHhhHHHHHHHhhhhHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH
Confidence 356778888999999999999988765 445677888889999999999999999999999999998888888877776
Q ss_pred cCCcHHH-HHHHHHHHhC
Q 007573 520 AGMWRDV-TRVRLLMKEQ 536 (597)
Q Consensus 520 ~g~~~~A-~~~~~~~~~~ 536 (597)
..++++. .++|..|..+
T Consensus 338 ~~~~~~kekk~y~~mF~k 355 (397)
T KOG0543|consen 338 IREYEEKEKKMYANMFAK 355 (397)
T ss_pred HHHHHHHHHHHHHHHhhc
Confidence 6665554 7889999763
No 223
>PRK11906 transcriptional regulator; Provisional
Probab=96.58 E-value=0.43 Score=46.94 Aligned_cols=144 Identities=10% Similarity=0.140 Sum_probs=95.6
Q ss_pred HHHHHHHHHHHHH-CCCCCCh-HHHHHHHHHHh---------ccCcHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhc
Q 007573 386 YEKALIFFSQMGL-NGFDPDG-ITFLSLLSACG---------HAGKVNESMDLFELMVKVYGIIPSSEHYTCLVDILSRA 454 (597)
Q Consensus 386 ~~~A~~~~~~m~~-~g~~p~~-~~~~~ll~~~~---------~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~ 454 (597)
.+.|+.+|.+... +.+.|+- ..|..+..++. ......+|.+.-+...+. -+-|+.....+..++.-.
T Consensus 274 ~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAvel--d~~Da~a~~~~g~~~~~~ 351 (458)
T PRK11906 274 IYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDI--TTVDGKILAIMGLITGLS 351 (458)
T ss_pred HHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhc--CCCCHHHHHHHHHHHHhh
Confidence 4678888888872 2346663 33333332221 122345556665555532 233577777788888888
Q ss_pred CCHHHHHHHHhhCC-CCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHH--HHHhcCCcHHHHHHH
Q 007573 455 GQLEKAWQITQGMP-FEAD-TGVWGSLLAACVINLNVELGELAAKKMRELDPQNSAVYVMLSN--LYAAAGMWRDVTRVR 530 (597)
Q Consensus 455 g~~~~A~~~~~~~~-~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~--~~~~~g~~~~A~~~~ 530 (597)
|+++.|...|++.. ..|| ..+|......+.-.|+.++|.+.++++++++|.-..+-..-.+ .|+. ...++|+++|
T Consensus 352 ~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 430 (458)
T PRK11906 352 GQAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICIDKSLQLEPRRRKAVVIKECVDMYVP-NPLKNNIKLY 430 (458)
T ss_pred cchhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCchhhHHHHHHHHHHHHcC-CchhhhHHHH
Confidence 88999999998876 6666 4577777777888999999999999999999987444433333 4544 4567778776
Q ss_pred HH
Q 007573 531 LL 532 (597)
Q Consensus 531 ~~ 532 (597)
-+
T Consensus 431 ~~ 432 (458)
T PRK11906 431 YK 432 (458)
T ss_pred hh
Confidence 54
No 224
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=96.58 E-value=0.0039 Score=58.74 Aligned_cols=46 Identities=11% Similarity=0.177 Sum_probs=30.7
Q ss_pred HHHHhcCChHHHHHHHhhcCCCCcch-------HHHHHHHHHhCCChhHHHHH
Q 007573 58 SALSRAGKISAARQLFDQMTTKDVIT-------WNAIITGYWQNGFLQESKNL 103 (597)
Q Consensus 58 ~~~~~~g~~~~A~~~~~~~~~~~~~~-------~~~li~~~~~~g~~~~A~~~ 103 (597)
.-++|.|+...-...|+...+-...- |..|..+|.-.+++++|++.
T Consensus 25 ERLck~gdcraGv~ff~aA~qvGTeDl~tLSAIYsQLGNAyfyL~DY~kAl~y 77 (639)
T KOG1130|consen 25 ERLCKMGDCRAGVDFFKAALQVGTEDLSTLSAIYSQLGNAYFYLKDYEKALKY 77 (639)
T ss_pred HHHHhccchhhhHHHHHHHHHhcchHHHHHHHHHHHhcchhhhHhhHHHHHhh
Confidence 44678899999999999887744433 44444555555566777654
No 225
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=96.55 E-value=0.021 Score=44.73 Aligned_cols=90 Identities=18% Similarity=0.078 Sum_probs=70.2
Q ss_pred HHHhhcCCHHHHHHHHhhCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC-CCC---CchHHHHHHHHHhcCC
Q 007573 449 DILSRAGQLEKAWQITQGMP--FEADTGVWGSLLAACVINLNVELGELAAKKMRELD-PQN---SAVYVMLSNLYAAAGM 522 (597)
Q Consensus 449 ~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~-p~~---~~~~~~l~~~~~~~g~ 522 (597)
-+++..|+++.|++.|.+.. .+.....||.-..++.-+|+.++|..-+.+++++. |.. -..|..-+..|...|+
T Consensus 51 valaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g~ 130 (175)
T KOG4555|consen 51 IALAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLGN 130 (175)
T ss_pred HHHHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhCc
Confidence 35677888888888887754 33467788888899999999999999999999874 433 3456677888888999
Q ss_pred cHHHHHHHHHHHhCCC
Q 007573 523 WRDVTRVRLLMKEQGV 538 (597)
Q Consensus 523 ~~~A~~~~~~~~~~~~ 538 (597)
-+.|..-|+..-+.|-
T Consensus 131 dd~AR~DFe~AA~LGS 146 (175)
T KOG4555|consen 131 DDAARADFEAAAQLGS 146 (175)
T ss_pred hHHHHHhHHHHHHhCC
Confidence 9999998888877663
No 226
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=96.50 E-value=0.077 Score=43.14 Aligned_cols=88 Identities=17% Similarity=0.089 Sum_probs=58.1
Q ss_pred HHHhhcCCHHHHHHHHhhCC----CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCC---chHHHHHHHHHhc
Q 007573 449 DILSRAGQLEKAWQITQGMP----FEA-DTGVWGSLLAACVINLNVELGELAAKKMRELDPQNS---AVYVMLSNLYAAA 520 (597)
Q Consensus 449 ~~~~~~g~~~~A~~~~~~~~----~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~---~~~~~l~~~~~~~ 520 (597)
....+.|++++|.+.|+.+. ..| ....-..|+.++.+.|++++|...+++.++++|.++ -++...+-++..+
T Consensus 18 ~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~~gL~~~~~ 97 (142)
T PF13512_consen 18 QEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYYMRGLSYYEQ 97 (142)
T ss_pred HHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHHHHHHHHHHH
Confidence 33446677777777776664 122 234556677888888888999999999999888873 3344445455555
Q ss_pred CC---------------cHHHHHHHHHHHhC
Q 007573 521 GM---------------WRDVTRVRLLMKEQ 536 (597)
Q Consensus 521 g~---------------~~~A~~~~~~~~~~ 536 (597)
.. ..+|...|+.+++.
T Consensus 98 ~~~~~~~~~~~drD~~~~~~A~~~f~~lv~~ 128 (142)
T PF13512_consen 98 DEGSLQSFFRSDRDPTPARQAFRDFEQLVRR 128 (142)
T ss_pred hhhHHhhhcccccCcHHHHHHHHHHHHHHHH
Confidence 44 56677777776654
No 227
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=96.46 E-value=0.32 Score=38.53 Aligned_cols=141 Identities=12% Similarity=0.123 Sum_probs=84.7
Q ss_pred HHHcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHH
Q 007573 380 FAQHGHYEKALIFFSQMGLNGFDPDGITFLSLLSACGHAGKVNESMDLFELMVKVYGIIPSSEHYTCLVDILSRAGQLEK 459 (597)
Q Consensus 380 ~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~ 459 (597)
..-.|..++..++..+.... .+..-++.++--....-+-+-..++++.+-+.+.+ ..+|++..
T Consensus 12 ~ildG~V~qGveii~k~v~S---sni~E~NWvICNiiDaa~C~yvv~~LdsIGkiFDi--------------s~C~NlKr 74 (161)
T PF09205_consen 12 RILDGDVKQGVEIIEKTVNS---SNIKEYNWVICNIIDAADCDYVVETLDSIGKIFDI--------------SKCGNLKR 74 (161)
T ss_dssp HHHTT-HHHHHHHHHHHHHH---S-HHHHTHHHHHHHHH--HHHHHHHHHHHGGGS-G--------------GG-S-THH
T ss_pred HHHhchHHHHHHHHHHHcCc---CCccccceeeeecchhhchhHHHHHHHHHhhhcCc--------------hhhcchHH
Confidence 34468888888888887753 34445666655444444555555666655432221 22333333
Q ss_pred HHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCcHHHHHHHHHHHhCCCc
Q 007573 460 AWQITQGMPFEADTGVWGSLLAACVINLNVELGELAAKKMRELDPQNSAVYVMLSNLYAAAGMWRDVTRVRLLMKEQGVT 539 (597)
Q Consensus 460 A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 539 (597)
....+-.+. .+......-+.....+|.-++-.+++..+.+.+..+|..+..++.+|.+.|+..++.+++++.-++|++
T Consensus 75 Vi~C~~~~n--~~se~vD~ALd~lv~~~kkDqLdki~~~l~kn~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~k 152 (161)
T PF09205_consen 75 VIECYAKRN--KLSEYVDLALDILVKQGKKDQLDKIYNELKKNEEINPEFLVKIANAYKKLGNTREANELLKEACEKGLK 152 (161)
T ss_dssp HHHHHHHTT-----HHHHHHHHHHHHTT-HHHHHHHHHHH-----S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-H
T ss_pred HHHHHHHhc--chHHHHHHHHHHHHHhccHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhchH
Confidence 333333322 234455666778888999999999999988766667889999999999999999999999999999874
No 228
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=96.45 E-value=0.0039 Score=45.63 Aligned_cols=61 Identities=13% Similarity=0.102 Sum_probs=38.2
Q ss_pred HHHHHHHHHHhhcCCHHHHHHHHhhCC-----CC---CC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 007573 442 EHYTCLVDILSRAGQLEKAWQITQGMP-----FE---AD-TGVWGSLLAACVINLNVELGELAAKKMREL 502 (597)
Q Consensus 442 ~~~~~l~~~~~~~g~~~~A~~~~~~~~-----~~---p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 502 (597)
.+|+.+...|.+.|++++|++.+++.. .. |+ ..++..+...+...|++++|++.+++++++
T Consensus 6 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i 75 (78)
T PF13424_consen 6 NAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALDI 75 (78)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 345555666666666666666655432 12 22 346677777788888888888888887654
No 229
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=96.43 E-value=1.3 Score=44.93 Aligned_cols=182 Identities=12% Similarity=0.110 Sum_probs=119.0
Q ss_pred cccHHHHHHHHHHhcCCHHHHHHHHhccCCC---ChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHH
Q 007573 338 NVSVCNAVITMYSRCGGILDSELAFRQIHSP---NLVSWNTIIAAFAQHGHYEKALIFFSQMGLNGFDPDGITFLSLLSA 414 (597)
Q Consensus 338 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~ 414 (597)
+..+|...++.-.+.|+.+.+.-.|+...-| -...|-..+.-.-..|+.+-|-.++....+-.++-.+.+-..-...
T Consensus 296 ql~nw~~yLdf~i~~g~~~~~~~l~ercli~cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~~i~L~~a~f 375 (577)
T KOG1258|consen 296 QLKNWRYYLDFEITLGDFSRVFILFERCLIPCALYDEFWIKYARWMESSGDVSLANNVLARACKIHVKKTPIIHLLEARF 375 (577)
T ss_pred HHHHHHHHhhhhhhcccHHHHHHHHHHHHhHHhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCCCCcHHHHHHHHH
Confidence 3556777778888888888888888877632 2334555555455558888888777766554333333333222233
Q ss_pred HhccCcHHHHHHHHHHhHHhcCCCCC-hHHHHHHHHHHhhcCCHHHHH---HHHhhCC-CCCCHHHHHH----HHHH-HH
Q 007573 415 CGHAGKVNESMDLFELMVKVYGIIPS-SEHYTCLVDILSRAGQLEKAW---QITQGMP-FEADTGVWGS----LLAA-CV 484 (597)
Q Consensus 415 ~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~---~~~~~~~-~~p~~~~~~~----l~~~-~~ 484 (597)
+...|+...|..+++.+... . |+ ...-..-+....+.|..+.+. .++.... ..-+..+... ..+- +.
T Consensus 376 ~e~~~n~~~A~~~lq~i~~e--~-pg~v~~~l~~~~~e~r~~~~~~~~~~~~l~s~~~~~~~~~~i~~~l~~~~~r~~~~ 452 (577)
T KOG1258|consen 376 EESNGNFDDAKVILQRIESE--Y-PGLVEVVLRKINWERRKGNLEDANYKNELYSSIYEGKENNGILEKLYVKFARLRYK 452 (577)
T ss_pred HHhhccHHHHHHHHHHHHhh--C-CchhhhHHHHHhHHHHhcchhhhhHHHHHHHHhcccccCcchhHHHHHHHHHHHHH
Confidence 45678999999999999875 3 55 333333456677888888887 5554433 2222222222 2222 45
Q ss_pred hcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCC
Q 007573 485 INLNVELGELAAKKMRELDPQNSAVYVMLSNLYAAAGM 522 (597)
Q Consensus 485 ~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 522 (597)
..++.+.|..++.++.+..|++...|..+.+....++.
T Consensus 453 i~~d~~~a~~~l~~~~~~~~~~k~~~~~~~~~~~~~~~ 490 (577)
T KOG1258|consen 453 IREDADLARIILLEANDILPDCKVLYLELIRFELIQPS 490 (577)
T ss_pred HhcCHHHHHHHHHHhhhcCCccHHHHHHHHHHHHhCCc
Confidence 66889999999999999999998888888888777663
No 230
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.42 E-value=0.021 Score=51.56 Aligned_cols=83 Identities=12% Similarity=0.091 Sum_probs=52.6
Q ss_pred hcCCHHHHHHHHhhCC-------CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC---CchHHHHHHHHHhcCC
Q 007573 453 RAGQLEKAWQITQGMP-------FEADTGVWGSLLAACVINLNVELGELAAKKMRELDPQN---SAVYVMLSNLYAAAGM 522 (597)
Q Consensus 453 ~~g~~~~A~~~~~~~~-------~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~---~~~~~~l~~~~~~~g~ 522 (597)
..|++.+|...|.... ..|+..-| |+.++...|+++.|...|..+.+..|+. |..+..|+.+..+.|+
T Consensus 153 ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yW--LGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~~~~~l~~ 230 (262)
T COG1729 153 KSGDYAEAEQAFQAFIKKYPNSTYTPNAYYW--LGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGVSLGRLGN 230 (262)
T ss_pred HcCCHHHHHHHHHHHHHcCCCCcccchhHHH--HHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHhcC
Confidence 4444555555554432 22333333 6667777777777777777777766554 5667777777777777
Q ss_pred cHHHHHHHHHHHhCC
Q 007573 523 WRDVTRVRLLMKEQG 537 (597)
Q Consensus 523 ~~~A~~~~~~~~~~~ 537 (597)
.++|..+|+++.++-
T Consensus 231 ~d~A~atl~qv~k~Y 245 (262)
T COG1729 231 TDEACATLQQVIKRY 245 (262)
T ss_pred HHHHHHHHHHHHHHC
Confidence 777777777776543
No 231
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=96.41 E-value=0.92 Score=43.22 Aligned_cols=281 Identities=17% Similarity=0.150 Sum_probs=123.9
Q ss_pred HHHHHHHHHh--CCChhHHHHHHHhc---ccCCcchHHHHHHH--HHcCCChHHHHHHHhhcCCCCCCchH--HHHHHHH
Q 007573 177 YTAMLDGFMK--KGEVDKARALSDYM---SFKNVVSWTVMITG--YVKNERFCEARELFYRMPDYDKNVFV--VTAMITG 247 (597)
Q Consensus 177 ~~~li~~~~~--~g~~~~A~~~~~~m---~~~~~~~~~~ll~~--~~~~g~~~~a~~~~~~~~~~~~~~~~--~~~l~~~ 247 (597)
|..|-.++.. .|+-..|.++-.+. ...|......++.+ -.-.|+++.|.+-|+.|.+. |.... ...|.-.
T Consensus 85 yqALStGliAagAGda~lARkmt~~~~~llssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~d-PEtRllGLRgLyle 163 (531)
T COG3898 85 YQALSTGLIAAGAGDASLARKMTARASKLLSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLDD-PETRLLGLRGLYLE 163 (531)
T ss_pred HHHHhhhhhhhccCchHHHHHHHHHHHhhhhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhcC-hHHHHHhHHHHHHH
Confidence 4444444433 34444554444333 23344444444433 23457777777777777652 21111 1122222
Q ss_pred HHhcCCHHHHHHHHhhcCC---CChhHHHHHHHHHHHcCChhHHHHHHHHhHHCC-CCCCHHH--HHHHHHHHh---ccc
Q 007573 248 FCKVGMLENARLLFERIQP---KDCVSFNAMIAGYAQNGVAEEALRLFSGMIKMD-MQPDDAT--LVSVFTACS---ALQ 318 (597)
Q Consensus 248 ~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p~~~~--~~~ll~~~~---~~~ 318 (597)
--+.|..+.|...-+..-. .-...+...+...+..|+|+.|+++++.-.... +.++..- -..++.+-+ -..
T Consensus 164 Aqr~GareaAr~yAe~Aa~~Ap~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~lda 243 (531)
T COG3898 164 AQRLGAREAARHYAERAAEKAPQLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDA 243 (531)
T ss_pred HHhcccHHHHHHHHHHHHhhccCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcC
Confidence 3356666666666655433 233466777777777888888887777655432 3333321 112222211 111
Q ss_pred hhHHHHHHHHHHHHhCCCCcccH-HHHHHHHHHhcCCHHHHHHHHhccC--CCChhhHHHHHHHHHHcCCHHHHHHHHHH
Q 007573 319 LLNEGRQSHVLVIRNGFEANVSV-CNAVITMYSRCGGILDSELAFRQIH--SPNLVSWNTIIAAFAQHGHYEKALIFFSQ 395 (597)
Q Consensus 319 ~~~~a~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 395 (597)
+...+...-.+..+. .|+..- -..-..++.+.|++.++-.+++.+- +|.+..+... .+.+.|+ .++.-+++
T Consensus 244 dp~~Ar~~A~~a~KL--~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~ePHP~ia~lY--~~ar~gd--ta~dRlkR 317 (531)
T COG3898 244 DPASARDDALEANKL--APDLVPAAVVAARALFRDGNLRKGSKILETAWKAEPHPDIALLY--VRARSGD--TALDRLKR 317 (531)
T ss_pred ChHHHHHHHHHHhhc--CCccchHHHHHHHHHHhccchhhhhhHHHHHHhcCCChHHHHHH--HHhcCCC--cHHHHHHH
Confidence 233333333222222 232211 1122344555555555555555554 3333332221 1122222 22222222
Q ss_pred HHH-CCCCCC-hHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhh-cCCHHHHHHHHhhC
Q 007573 396 MGL-NGFDPD-GITFLSLLSACGHAGKVNESMDLFELMVKVYGIIPSSEHYTCLVDILSR-AGQLEKAWQITQGM 467 (597)
Q Consensus 396 m~~-~g~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~-~g~~~~A~~~~~~~ 467 (597)
... ..++|| ..+...+..+-...|++..|..--+... ...|....|..|.+.-.. .|+-.++...+.+.
T Consensus 318 a~~L~slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~---r~~pres~~lLlAdIeeAetGDqg~vR~wlAqa 389 (531)
T COG3898 318 AKKLESLKPNNAESSLAVAEAALDAGEFSAARAKAEAAA---REAPRESAYLLLADIEEAETGDQGKVRQWLAQA 389 (531)
T ss_pred HHHHHhcCccchHHHHHHHHHHHhccchHHHHHHHHHHh---hhCchhhHHHHHHHHHhhccCchHHHHHHHHHH
Confidence 221 112333 3344444445555555555554444333 334555555555554432 25555555555443
No 232
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=96.41 E-value=0.23 Score=50.06 Aligned_cols=89 Identities=15% Similarity=0.126 Sum_probs=51.3
Q ss_pred cCCcchHHHHHHHHHcCCChHHHHHHHhhcCCCCCCchHHHHHHHHHHhcCCHHHHHHHHhhcCCCChhHHH--------
Q 007573 202 FKNVVSWTVMITGYVKNERFCEARELFYRMPDYDKNVFVVTAMITGFCKVGMLENARLLFERIQPKDCVSFN-------- 273 (597)
Q Consensus 202 ~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~-------- 273 (597)
..+..+...+..-+.+...+..|-++|..+-+ ..+++++....+++.+|..+-++.++--...|-
T Consensus 744 ~~ere~l~~~a~ylk~l~~~gLAaeIF~k~gD-------~ksiVqlHve~~~W~eAFalAe~hPe~~~dVy~pyaqwLAE 816 (1081)
T KOG1538|consen 744 KAEREPLLLCATYLKKLDSPGLAAEIFLKMGD-------LKSLVQLHVETQRWDEAFALAEKHPEFKDDVYMPYAQWLAE 816 (1081)
T ss_pred hhhhhHHHHHHHHHhhccccchHHHHHHHhcc-------HHHHhhheeecccchHhHhhhhhCccccccccchHHHHhhh
Confidence 33445555555555566666667777766654 235666777777788877777777652222222
Q ss_pred -----HHHHHHHHcCChhHHHHHHHHhHH
Q 007573 274 -----AMIAGYAQNGVAEEALRLFSGMIK 297 (597)
Q Consensus 274 -----~li~~~~~~g~~~~A~~~~~~m~~ 297 (597)
..-.+|.+.|+..+|..+++++..
T Consensus 817 ~DrFeEAqkAfhkAGr~~EA~~vLeQLtn 845 (1081)
T KOG1538|consen 817 NDRFEEAQKAFHKAGRQREAVQVLEQLTN 845 (1081)
T ss_pred hhhHHHHHHHHHHhcchHHHHHHHHHhhh
Confidence 223345555555555555555543
No 233
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=96.38 E-value=0.35 Score=43.12 Aligned_cols=142 Identities=15% Similarity=0.136 Sum_probs=77.1
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHCCCC-C-ChHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChH-HHHHHHHH
Q 007573 374 NTIIAAFAQHGHYEKALIFFSQMGLNGFD-P-DGITFLSLLSACGHAGKVNESMDLFELMVKVYGIIPSSE-HYTCLVDI 450 (597)
Q Consensus 374 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~-p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~-~~~~l~~~ 450 (597)
-.....+...|++.+|++.|+++...-.. | -......++.++.+.|+++.|...++..++.++-.|... .+-.++..
T Consensus 9 Y~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~~A~Y~~g~~ 88 (203)
T PF13525_consen 9 YQKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKADYALYMLGLS 88 (203)
T ss_dssp HHHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhhHHHHHHHH
Confidence 33455566778888888888887764211 1 133455566777777888888888887777655444421 11111111
Q ss_pred HhhcCCHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCc-----------------hHHHH
Q 007573 451 LSRAGQLEKAWQITQGMPFEADTGVWGSLLAACVINLNVELGELAAKKMRELDPQNSA-----------------VYVML 513 (597)
Q Consensus 451 ~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~-----------------~~~~l 513 (597)
+... ..... ......+...+|...++.+++.-|+++- .-..+
T Consensus 89 ~~~~--~~~~~-------------------~~~~D~~~~~~A~~~~~~li~~yP~S~y~~~A~~~l~~l~~~la~~e~~i 147 (203)
T PF13525_consen 89 YYKQ--IPGIL-------------------RSDRDQTSTRKAIEEFEELIKRYPNSEYAEEAKKRLAELRNRLAEHELYI 147 (203)
T ss_dssp HHHH--HHHHH--------------------TT---HHHHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHh--Cccch-------------------hcccChHHHHHHHHHHHHHHHHCcCchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1111 00000 0011223345666666666666666531 12456
Q ss_pred HHHHHhcCCcHHHHHHHHHHHhC
Q 007573 514 SNLYAAAGMWRDVTRVRLLMKEQ 536 (597)
Q Consensus 514 ~~~~~~~g~~~~A~~~~~~~~~~ 536 (597)
+..|.+.|.+..|..-++.+.+.
T Consensus 148 a~~Y~~~~~y~aA~~r~~~v~~~ 170 (203)
T PF13525_consen 148 ARFYYKRGKYKAAIIRFQYVIEN 170 (203)
T ss_dssp HHHHHCTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHcccHHHHHHHHHHHHHH
Confidence 88899999999999999998874
No 234
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=96.30 E-value=0.36 Score=49.19 Aligned_cols=186 Identities=13% Similarity=0.068 Sum_probs=123.0
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHCC-CCCCh-----HHHHHHHHHHhc----cCcHHHHHHHHHHhHHhcCCCCChH
Q 007573 373 WNTIIAAFAQHGHYEKALIFFSQMGLNG-FDPDG-----ITFLSLLSACGH----AGKVNESMDLFELMVKVYGIIPSSE 442 (597)
Q Consensus 373 ~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p~~-----~~~~~ll~~~~~----~g~~~~a~~~~~~~~~~~~~~p~~~ 442 (597)
...++....-.|+-+.+++.+.+..+.+ +.-.. ..|..++..+.. ....+.|.++++.+.+.+ |+..
T Consensus 191 ~~kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~y---P~s~ 267 (468)
T PF10300_consen 191 VLKLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKRY---PNSA 267 (468)
T ss_pred HHHHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHhC---CCcH
Confidence 3445555666788888888887766532 11111 134444443332 457888999999998653 6655
Q ss_pred HHHH-HHHHHhhcCCHHHHHHHHhhCCC------CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHH-HHH
Q 007573 443 HYTC-LVDILSRAGQLEKAWQITQGMPF------EADTGVWGSLLAACVINLNVELGELAAKKMRELDPQNSAVYV-MLS 514 (597)
Q Consensus 443 ~~~~-l~~~~~~~g~~~~A~~~~~~~~~------~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~-~l~ 514 (597)
.|.. -...+...|++++|.+.|++... +-....+--++..+....++++|...+.++.+.+.-....|. ..+
T Consensus 268 lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s~WSka~Y~Y~~a 347 (468)
T PF10300_consen 268 LFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKESKWSKAFYAYLAA 347 (468)
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhccccHHHHHHHHHH
Confidence 5443 35667788999999999997541 122345566777788899999999999999997776655554 456
Q ss_pred HHHHhcCCc-------HHHHHHHHHHHhCCCccCCCeeEEEECCEEEEEEeCCCCCcchHHHHHHHHHHHHH
Q 007573 515 NLYAAAGMW-------RDVTRVRLLMKEQGVTKQCAYSWIEIGNKVHYFLGGDMSHPCIDKIHLELKRASVQ 579 (597)
Q Consensus 515 ~~~~~~g~~-------~~A~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~p~~~~~~~~l~~~~~~ 579 (597)
-++...|+. ++|.++++++.....+ ..| ++-|....+.+..++...+
T Consensus 348 ~c~~~l~~~~~~~~~~~~a~~l~~~vp~l~~k-----------------~~g-k~lp~E~Fv~RK~~~~~~~ 401 (468)
T PF10300_consen 348 ACLLMLGREEEAKEHKKEAEELFRKVPKLKQK-----------------KAG-KSLPLEKFVIRKAQKYEKQ 401 (468)
T ss_pred HHHHhhccchhhhhhHHHHHHHHHHHHHHHhh-----------------hcc-CCCChHHHHHHHHHHHHhc
Confidence 678888988 8888888887653221 111 3456666666666665555
No 235
>PRK11906 transcriptional regulator; Provisional
Probab=96.24 E-value=0.095 Score=51.33 Aligned_cols=119 Identities=8% Similarity=0.045 Sum_probs=89.6
Q ss_pred cHHHHHHHHHHhHHhcCCCCC-hHHHHHHHHHHhh---------cCCHHHHHHHHhhCC-C-CCCHHHHHHHHHHHHhcC
Q 007573 420 KVNESMDLFELMVKVYGIIPS-SEHYTCLVDILSR---------AGQLEKAWQITQGMP-F-EADTGVWGSLLAACVINL 487 (597)
Q Consensus 420 ~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~---------~g~~~~A~~~~~~~~-~-~p~~~~~~~l~~~~~~~g 487 (597)
..+.|..+|.+......+.|+ ...|..+...+.. .....+|.++.++.. . +.|+.....++.+....+
T Consensus 273 ~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld~~Da~a~~~~g~~~~~~~ 352 (458)
T PRK11906 273 SIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDITTVDGKILAIMGLITGLSG 352 (458)
T ss_pred HHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhhc
Confidence 456788888888754466676 5556555544432 223445666665544 3 446777777777777888
Q ss_pred CHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCcHHHHHHHHHHHhCCC
Q 007573 488 NVELGELAAKKMRELDPQNSAVYVMLSNLYAAAGMWRDVTRVRLLMKEQGV 538 (597)
Q Consensus 488 ~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 538 (597)
+++.|...|+++..++|+...++...++.+.-.|+.++|.+.+++..+..+
T Consensus 353 ~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP 403 (458)
T PRK11906 353 QAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICIDKSLQLEP 403 (458)
T ss_pred chhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCc
Confidence 899999999999999999999999999999999999999999999766443
No 236
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=96.21 E-value=0.89 Score=40.99 Aligned_cols=58 Identities=10% Similarity=0.069 Sum_probs=46.8
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcCCCC---CchHHHHHHHHHhcCCcHHHHHHHHHHHhC
Q 007573 479 LLAACVINLNVELGELAAKKMRELDPQN---SAVYVMLSNLYAAAGMWRDVTRVRLLMKEQ 536 (597)
Q Consensus 479 l~~~~~~~g~~~~a~~~~~~~~~~~p~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 536 (597)
+..-|.+.|.+..|..-++++++.-|+. ...+..+.++|...|..++|.+.-+-+...
T Consensus 173 IaryY~kr~~~~AA~nR~~~v~e~y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~~N 233 (254)
T COG4105 173 IARYYLKRGAYVAAINRFEEVLENYPDTSAVREALARLEEAYYALGLTDEAKKTAKVLGAN 233 (254)
T ss_pred HHHHHHHhcChHHHHHHHHHHHhccccccchHHHHHHHHHHHHHhCChHHHHHHHHHHHhc
Confidence 4566889999999999999999986665 455667788999999999999987665543
No 237
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=96.12 E-value=0.093 Score=42.23 Aligned_cols=97 Identities=12% Similarity=0.228 Sum_probs=61.4
Q ss_pred ccHHHHHHHHHHhcCCHHHHHHHHhccCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHhcc
Q 007573 339 VSVCNAVITMYSRCGGILDSELAFRQIHSPNLVSWNTIIAAFAQHGHYEKALIFFSQMGLNGFDPDGITFLSLLSACGHA 418 (597)
Q Consensus 339 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~ 418 (597)
..++..++.++++.|+++....+++..-..++. +-...+. --......|+..+..+++.+|+..
T Consensus 2 e~~~~~ii~al~r~g~~~~i~~~i~~~WgI~~~-------~~~~~~~---------~~~~spl~Pt~~lL~AIv~sf~~n 65 (126)
T PF12921_consen 2 EELLCNIIYALGRSGQLDSIKSYIKSVWGIDVN-------GKKKEGD---------YPPSSPLYPTSRLLIAIVHSFGYN 65 (126)
T ss_pred hHHHHHHHHHHhhcCCHHHHHHHHHHhcCCCCC-------CccccCc---------cCCCCCCCCCHHHHHHHHHHHHhc
Confidence 345666666677777766666666554321111 0000000 111234678888888888888888
Q ss_pred CcHHHHHHHHHHhHHhcCCCCChHHHHHHHHHH
Q 007573 419 GKVNESMDLFELMVKVYGIIPSSEHYTCLVDIL 451 (597)
Q Consensus 419 g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~ 451 (597)
|++..|.++.+...+.++++.+...|..|+.-.
T Consensus 66 ~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W~ 98 (126)
T PF12921_consen 66 GDIFSALKLVDFFSRKYPIPIPKEFWRRLLEWA 98 (126)
T ss_pred ccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Confidence 888888888888888888777777777776543
No 238
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.04 E-value=2.4 Score=44.36 Aligned_cols=96 Identities=13% Similarity=0.184 Sum_probs=57.4
Q ss_pred HHcCCChHHHHHHHccCCC--C---ChhhHHHHHHHHHcCCChHHHHHHHccCCCCCchhHHHHHHHHHhCCChhHHHHH
Q 007573 122 CIDNDRIDDAFDYFQAMPE--R---NTATYNAMISGFLKHGRLEEATRLFEQMPRRNVISYTAMLDGFMKKGEVDKARAL 196 (597)
Q Consensus 122 ~~~~~~~~~A~~~~~~~~~--~---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 196 (597)
+.+.+.+++|+...+.... + -..++..++..+.-.|++++|-...-.|...+..-|...+..+...++......+
T Consensus 366 ll~~k~yeeAl~~~k~~~~~~~~~~i~kv~~~yI~HLl~~~~y~~Aas~~p~m~gn~~~eWe~~V~~f~e~~~l~~Ia~~ 445 (846)
T KOG2066|consen 366 LLEKKKYEEALDAAKASIGNEERFVIKKVGKTYIDHLLFEGKYDEAASLCPKMLGNNAAEWELWVFKFAELDQLTDIAPY 445 (846)
T ss_pred HHHhhHHHHHHHHHHhccCCccccchHHHHHHHHHHHHhcchHHHHHhhhHHHhcchHHHHHHHHHHhccccccchhhcc
Confidence 3445566666666655542 1 2245666777777777777777777777777777777777777776666544433
Q ss_pred HHhccc-CCcchHHHHHHHHHc
Q 007573 197 SDYMSF-KNVVSWTVMITGYVK 217 (597)
Q Consensus 197 ~~~m~~-~~~~~~~~ll~~~~~ 217 (597)
+-.-.. .+...|..++..+..
T Consensus 446 lPt~~~rL~p~vYemvLve~L~ 467 (846)
T KOG2066|consen 446 LPTGPPRLKPLVYEMVLVEFLA 467 (846)
T ss_pred CCCCCcccCchHHHHHHHHHHH
Confidence 221111 234556666666655
No 239
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=96.04 E-value=0.048 Score=53.22 Aligned_cols=62 Identities=8% Similarity=-0.040 Sum_probs=46.1
Q ss_pred hHHHHHHHHHHhhcCCHHHHHHHHhhCC-CCCCHH----HHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 007573 441 SEHYTCLVDILSRAGQLEKAWQITQGMP-FEADTG----VWGSLLAACVINLNVELGELAAKKMREL 502 (597)
Q Consensus 441 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p~~~----~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 502 (597)
...+..+..+|...|++++|...|++.. ..|+.. +|..+..+|...|+.++|+..+++++++
T Consensus 75 a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 75 AEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 5667777777777788888877777643 566532 4777888888888888888888888876
No 240
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=96.02 E-value=1.6 Score=42.79 Aligned_cols=150 Identities=13% Similarity=0.017 Sum_probs=85.3
Q ss_pred CChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC---ChHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCC--hH
Q 007573 368 PNLVSWNTIIAAFAQHGHYEKALIFFSQMGLNGFDP---DGITFLSLLSACGHAGKVNESMDLFELMVKVYGIIPS--SE 442 (597)
Q Consensus 368 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p---~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~--~~ 442 (597)
....+|..++..+.+.|+++.|...+.++...+..+ .+.....-...+...|+..+|...++..... .+..+ ..
T Consensus 144 ~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~-~~~~~~~~~ 222 (352)
T PF02259_consen 144 ELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKC-RLSKNIDSI 222 (352)
T ss_pred HHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHH-Hhhhccccc
Confidence 445578888888999999999999888887643221 3344444556667778888888888877762 11111 11
Q ss_pred HHHHHHHHHhhcCCHHHHHHHH-hhCCCCCCHHHHHHHHHHHHhc------CCHHHHHHHHHHHHhcCCCCCchHHHHHH
Q 007573 443 HYTCLVDILSRAGQLEKAWQIT-QGMPFEADTGVWGSLLAACVIN------LNVELGELAAKKMRELDPQNSAVYVMLSN 515 (597)
Q Consensus 443 ~~~~l~~~~~~~g~~~~A~~~~-~~~~~~p~~~~~~~l~~~~~~~------g~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 515 (597)
....+...+.. ..+.....- .......-..++..+..-+... ++.+.+...|.++.+..|.....+..++.
T Consensus 223 ~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~k~~~~~a~ 300 (352)
T PF02259_consen 223 SNAELKSGLLE--SLEVISSTNLDKESKELKAKAFLLLAKWLDELYSKLSSESSDEILKYYKEATKLDPSWEKAWHSWAL 300 (352)
T ss_pred cHHHHhhcccc--ccccccccchhhhhHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHhChhHHHHHHHHHH
Confidence 11111111000 000000000 0000000122333334444444 78899999999999999998888888877
Q ss_pred HHHhc
Q 007573 516 LYAAA 520 (597)
Q Consensus 516 ~~~~~ 520 (597)
.+.+.
T Consensus 301 ~~~~~ 305 (352)
T PF02259_consen 301 FNDKL 305 (352)
T ss_pred HHHHH
Confidence 76553
No 241
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=95.90 E-value=0.094 Score=44.73 Aligned_cols=90 Identities=16% Similarity=0.057 Sum_probs=73.1
Q ss_pred HHHhhcCCHHHHHHHHhhCC-CCCC------HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcC
Q 007573 449 DILSRAGQLEKAWQITQGMP-FEAD------TGVWGSLLAACVINLNVELGELAAKKMRELDPQNSAVYVMLSNLYAAAG 521 (597)
Q Consensus 449 ~~~~~~g~~~~A~~~~~~~~-~~p~------~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 521 (597)
+-+...|++++|..-|.... .-|. ...|..-..+..+.+.++.|+.-..++++++|....++..-+.+|.+..
T Consensus 103 N~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kAl~RRAeayek~e 182 (271)
T KOG4234|consen 103 NELFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEKALERRAEAYEKME 182 (271)
T ss_pred HHhhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHHHHHHHHHHHhhh
Confidence 44667888888888776654 2222 3345555667889999999999999999999999888888899999999
Q ss_pred CcHHHHHHHHHHHhCCC
Q 007573 522 MWRDVTRVRLLMKEQGV 538 (597)
Q Consensus 522 ~~~~A~~~~~~~~~~~~ 538 (597)
++++|++-|+++.+..+
T Consensus 183 k~eealeDyKki~E~dP 199 (271)
T KOG4234|consen 183 KYEEALEDYKKILESDP 199 (271)
T ss_pred hHHHHHHHHHHHHHhCc
Confidence 99999999999988654
No 242
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.88 E-value=0.22 Score=46.14 Aligned_cols=111 Identities=8% Similarity=0.055 Sum_probs=52.7
Q ss_pred CCHHHHHHHHhccC---CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCChHHHH----HHHHHHhccCcHHHHH
Q 007573 353 GGILDSELAFRQIH---SPNLVSWNTIIAAFAQHGHYEKALIFFSQMGLNGFDPDGITFL----SLLSACGHAGKVNESM 425 (597)
Q Consensus 353 g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~----~ll~~~~~~g~~~~a~ 425 (597)
|+..+|-..++++. +.|..+++.-=.+|...|+.+.-...+++.... ..||...|. .+.-++...|-+++|.
T Consensus 117 g~~h~a~~~wdklL~d~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~-wn~dlp~~sYv~GmyaFgL~E~g~y~dAE 195 (491)
T KOG2610|consen 117 GKHHEAAIEWDKLLDDYPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPK-WNADLPCYSYVHGMYAFGLEECGIYDDAE 195 (491)
T ss_pred ccccHHHHHHHHHHHhCchhhhhhhhhhhHHHhccchhhhhhHHHHhccc-cCCCCcHHHHHHHHHHhhHHHhccchhHH
Confidence 44444444444443 445555555555555566655555555555432 133332221 1112334455566665
Q ss_pred HHHHHhHHhcCCCC-ChHHHHHHHHHHhhcCCHHHHHHHHhhC
Q 007573 426 DLFELMVKVYGIIP-SSEHYTCLVDILSRAGQLEKAWQITQGM 467 (597)
Q Consensus 426 ~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 467 (597)
+.-++..+ +.| |.-.-.+....+.-.|++.++.++..+-
T Consensus 196 k~A~ralq---iN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~t 235 (491)
T KOG2610|consen 196 KQADRALQ---INRFDCWASHAKAHVLEMNGRHKEGKEFMYKT 235 (491)
T ss_pred HHHHhhcc---CCCcchHHHHHHHHHHHhcchhhhHHHHHHhc
Confidence 55544432 222 2333444555555556666666555543
No 243
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=95.87 E-value=1.3 Score=40.03 Aligned_cols=197 Identities=17% Similarity=0.129 Sum_probs=121.3
Q ss_pred ccHHHHHHHHHHhcCCHHHHHHHHhccC-----CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCChHHHHHHHH
Q 007573 339 VSVCNAVITMYSRCGGILDSELAFRQIH-----SPNLVSWNTIIAAFAQHGHYEKALIFFSQMGLNGFDPDGITFLSLLS 413 (597)
Q Consensus 339 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~-----~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~ 413 (597)
..........+...+++..+...+.... ......+......+...+++..+.+.+.........+. ........
T Consensus 59 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 137 (291)
T COG0457 59 AGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDPD-LAEALLAL 137 (291)
T ss_pred hHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCcc-hHHHHHHH
Confidence 3445555556666666666666555442 23344555556666666777777777777765432221 12222222
Q ss_pred -HHhccCcHHHHHHHHHHhHHhcCC--CCChHHHHHHHHHHhhcCCHHHHHHHHhhCC-CCCC--HHHHHHHHHHHHhcC
Q 007573 414 -ACGHAGKVNESMDLFELMVKVYGI--IPSSEHYTCLVDILSRAGQLEKAWQITQGMP-FEAD--TGVWGSLLAACVINL 487 (597)
Q Consensus 414 -~~~~~g~~~~a~~~~~~~~~~~~~--~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p~--~~~~~~l~~~~~~~g 487 (597)
.+...|+.+.+...+...... .. ......+......+...++.++|...+.+.. ..++ ...+..+...+...+
T Consensus 138 ~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 216 (291)
T COG0457 138 GALYELGDYEEALELYEKALEL-DPELNELAEALLALGALLEALGRYEEALELLEKALKLNPDDDAEALLNLGLLYLKLG 216 (291)
T ss_pred HHHHHcCCHHHHHHHHHHHHhc-CCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhCcccchHHHHHhhHHHHHcc
Confidence 566777888888877776431 11 1123334444444666778888887777655 2233 556777777777777
Q ss_pred CHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCcHHHHHHHHHHHhCC
Q 007573 488 NVELGELAAKKMRELDPQNSAVYVMLSNLYAAAGMWRDVTRVRLLMKEQG 537 (597)
Q Consensus 488 ~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 537 (597)
+++.|...+..+....|.....+..+...+...|.++++...+.......
T Consensus 217 ~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 266 (291)
T COG0457 217 KYEEALEYYEKALELDPDNAEALYNLALLLLELGRYEEALEALEKALELD 266 (291)
T ss_pred cHHHHHHHHHHHHhhCcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 88888888888888877755556666666666677888887777766543
No 244
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=95.84 E-value=0.53 Score=40.92 Aligned_cols=164 Identities=16% Similarity=0.135 Sum_probs=95.2
Q ss_pred CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC-hHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChHHHH
Q 007573 367 SPNLVSWNTIIAAFAQHGHYEKALIFFSQMGLNGFDPD-GITFLSLLSACGHAGKVNESMDLFELMVKVYGIIPSSEHYT 445 (597)
Q Consensus 367 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~ 445 (597)
+.-+.+||-+.--+...|+++.|.+.|+...+.. |. ..++..-.-++.-.|++.-|.+-+-..-+...-.|-...|-
T Consensus 96 P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELD--p~y~Ya~lNRgi~~YY~gR~~LAq~d~~~fYQ~D~~DPfR~LWL 173 (297)
T COG4785 96 PDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELD--PTYNYAHLNRGIALYYGGRYKLAQDDLLAFYQDDPNDPFRSLWL 173 (297)
T ss_pred CCcHHHHHHHHHHHHhcccchHHHHHhhhHhccC--CcchHHHhccceeeeecCchHhhHHHHHHHHhcCCCChHHHHHH
Confidence 3345678888888888899999999998887653 32 23333333345567888888776655544312222222222
Q ss_pred HHHHHHhhcCCHHHHHHHH-hhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC-------CchHHHHHHHH
Q 007573 446 CLVDILSRAGQLEKAWQIT-QGMPFEADTGVWGSLLAACVINLNVELGELAAKKMRELDPQN-------SAVYVMLSNLY 517 (597)
Q Consensus 446 ~l~~~~~~~g~~~~A~~~~-~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~-------~~~~~~l~~~~ 517 (597)
.+. .+.-++.+|..-+ ++.. +-|..-|...+-.+.- |... .+.+++++.+-..++ ..+|..|+.-|
T Consensus 174 Yl~---E~k~dP~~A~tnL~qR~~-~~d~e~WG~~iV~~yL-gkiS-~e~l~~~~~a~a~~n~~~Ae~LTEtyFYL~K~~ 247 (297)
T COG4785 174 YLN---EQKLDPKQAKTNLKQRAE-KSDKEQWGWNIVEFYL-GKIS-EETLMERLKADATDNTSLAEHLTETYFYLGKYY 247 (297)
T ss_pred HHH---HhhCCHHHHHHHHHHHHH-hccHhhhhHHHHHHHH-hhcc-HHHHHHHHHhhccchHHHHHHHHHHHHHHHHHH
Confidence 222 2334666776544 3333 4455566555544322 1111 112233333222222 46788999999
Q ss_pred HhcCCcHHHHHHHHHHHhCCC
Q 007573 518 AAAGMWRDVTRVRLLMKEQGV 538 (597)
Q Consensus 518 ~~~g~~~~A~~~~~~~~~~~~ 538 (597)
...|+.++|..+|+.....++
T Consensus 248 l~~G~~~~A~~LfKLaiannV 268 (297)
T COG4785 248 LSLGDLDEATALFKLAVANNV 268 (297)
T ss_pred hccccHHHHHHHHHHHHHHhH
Confidence 999999999999998887664
No 245
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=95.77 E-value=0.88 Score=41.84 Aligned_cols=50 Identities=14% Similarity=0.127 Sum_probs=22.9
Q ss_pred HHcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHhccCcHHHHHHHHHHh
Q 007573 381 AQHGHYEKALIFFSQMGLNGFDPDGITFLSLLSACGHAGKVNESMDLFELM 431 (597)
Q Consensus 381 ~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~ 431 (597)
...|++.+|..+|+...... +-+...-..+..++...|+.+.|..++..+
T Consensus 145 ~~~e~~~~a~~~~~~al~~~-~~~~~~~~~la~~~l~~g~~e~A~~iL~~l 194 (304)
T COG3118 145 IEAEDFGEAAPLLKQALQAA-PENSEAKLLLAECLLAAGDVEAAQAILAAL 194 (304)
T ss_pred hhccchhhHHHHHHHHHHhC-cccchHHHHHHHHHHHcCChHHHHHHHHhC
Confidence 34455555555555544432 112233334444555555555555555443
No 246
>PRK09687 putative lyase; Provisional
Probab=95.73 E-value=1.8 Score=40.62 Aligned_cols=136 Identities=13% Similarity=0.066 Sum_probs=58.9
Q ss_pred CCchhHHHHHHHHHhCCChhHHHHHHHhcccCCcchHHHHHHHHHcCC-ChHHHHHHHhhcCCCCCCchHHHHHHHHHHh
Q 007573 172 RNVISYTAMLDGFMKKGEVDKARALSDYMSFKNVVSWTVMITGYVKNE-RFCEARELFYRMPDYDKNVFVVTAMITGFCK 250 (597)
Q Consensus 172 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~ll~~~~~~g-~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~ 250 (597)
++..+-...+.++.+.|+.+..-.+..-+..+|...-...+.++.+.+ +-..+...+..+.. +++..+....+.++++
T Consensus 140 ~~~~VR~~a~~aLg~~~~~~ai~~L~~~L~d~~~~VR~~A~~aLg~~~~~~~~~~~~L~~~L~-D~~~~VR~~A~~aLg~ 218 (280)
T PRK09687 140 KSTNVRFAVAFALSVINDEAAIPLLINLLKDPNGDVRNWAAFALNSNKYDNPDIREAFVAMLQ-DKNEEIRIEAIIGLAL 218 (280)
T ss_pred CCHHHHHHHHHHHhccCCHHHHHHHHHHhcCCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhc-CCChHHHHHHHHHHHc
Confidence 344444445555555554332222233333344433333444444332 12233333333321 2455555555666666
Q ss_pred cCCHHHHHHHHhhcCCCChhHHHHHHHHHHHcCChhHHHHHHHHhHHCCCCCCHHHHHHHHHH
Q 007573 251 VGMLENARLLFERIQPKDCVSFNAMIAGYAQNGVAEEALRLFSGMIKMDMQPDDATLVSVFTA 313 (597)
Q Consensus 251 ~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~ 313 (597)
.|+.+-...+.+.+..++ .....+.++...|.. +|+..+.++.+. .||...-...+.+
T Consensus 219 ~~~~~av~~Li~~L~~~~--~~~~a~~ALg~ig~~-~a~p~L~~l~~~--~~d~~v~~~a~~a 276 (280)
T PRK09687 219 RKDKRVLSVLIKELKKGT--VGDLIIEAAGELGDK-TLLPVLDTLLYK--FDDNEIITKAIDK 276 (280)
T ss_pred cCChhHHHHHHHHHcCCc--hHHHHHHHHHhcCCH-hHHHHHHHHHhh--CCChhHHHHHHHH
Confidence 665333233333333333 223455556666653 466666665543 2344443333333
No 247
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=95.71 E-value=0.024 Score=33.42 Aligned_cols=32 Identities=22% Similarity=0.073 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 007573 474 GVWGSLLAACVINLNVELGELAAKKMRELDPQ 505 (597)
Q Consensus 474 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~ 505 (597)
.+|..++..+...|++++|+..++++++++|+
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~ 33 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALELDPD 33 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHCcC
Confidence 46777888888888888888888888888886
No 248
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=95.68 E-value=0.13 Score=43.12 Aligned_cols=71 Identities=24% Similarity=0.343 Sum_probs=43.2
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHhccCcHHHHHHHHHHhHH----hcCCCCChHHH
Q 007573 373 WNTIIAAFAQHGHYEKALIFFSQMGLNGFDPDGITFLSLLSACGHAGKVNESMDLFELMVK----VYGIIPSSEHY 444 (597)
Q Consensus 373 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~----~~~~~p~~~~~ 444 (597)
...++..+...|++++|+.+.+++.... +-|...+..++.++...|+..+|.++|+.+.+ ..|+.|++.+-
T Consensus 65 ~~~l~~~~~~~~~~~~a~~~~~~~l~~d-P~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~~ 139 (146)
T PF03704_consen 65 LERLAEALLEAGDYEEALRLLQRALALD-PYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPETR 139 (146)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHHS-TT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHHH
T ss_pred HHHHHHHHHhccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHHH
Confidence 4445566667777777777777777643 44566777777777778887777777776543 34777776553
No 249
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=95.68 E-value=1.6 Score=43.30 Aligned_cols=97 Identities=11% Similarity=0.127 Sum_probs=48.4
Q ss_pred HHHHHhccCcHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHhhCC--CCCCHH--HHHHHHHHHHhc
Q 007573 411 LLSACGHAGKVNESMDLFELMVKVYGIIPSSEHYTCLVDILSRAGQLEKAWQITQGMP--FEADTG--VWGSLLAACVIN 486 (597)
Q Consensus 411 ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~p~~~--~~~~l~~~~~~~ 486 (597)
+..++.+.|+.++|.+.++++.+.+.......+...|+..|...+.+.++..++.+-. .-|... .|+..+-.....
T Consensus 265 LAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi~lpkSAti~YTaALLkaRav 344 (539)
T PF04184_consen 265 LAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDDISLPKSATICYTAALLKARAV 344 (539)
T ss_pred HHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhccccCCchHHHHHHHHHHHHHhh
Confidence 4444455566666666666555542221223344455566666666666666555543 112222 333333222222
Q ss_pred CC---------------HHHHHHHHHHHHhcCCCCC
Q 007573 487 LN---------------VELGELAAKKMRELDPQNS 507 (597)
Q Consensus 487 g~---------------~~~a~~~~~~~~~~~p~~~ 507 (597)
++ -..|.+.+.++.+.+|..|
T Consensus 345 ~d~fs~e~a~rRGls~ae~~aveAi~RAvefNPHVp 380 (539)
T PF04184_consen 345 GDKFSPEAASRRGLSPAEMNAVEAIHRAVEFNPHVP 380 (539)
T ss_pred ccccCchhhhhcCCChhHHHHHHHHHHHHHhCCCCc
Confidence 21 1346788888888887643
No 250
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=95.64 E-value=0.69 Score=42.47 Aligned_cols=122 Identities=16% Similarity=0.116 Sum_probs=88.2
Q ss_pred HHHhccCcHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHhhCCCCCCHHHHHH---HHHHHHhcCCH
Q 007573 413 SACGHAGKVNESMDLFELMVKVYGIIPSSEHYTCLVDILSRAGQLEKAWQITQGMPFEADTGVWGS---LLAACVINLNV 489 (597)
Q Consensus 413 ~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~---l~~~~~~~g~~ 489 (597)
......|+..+|...|+..... .+-+...-..++..|...|+.++|..++..++.+-....+.. -+....+..+.
T Consensus 142 ~~~~~~e~~~~a~~~~~~al~~--~~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~ 219 (304)
T COG3118 142 KELIEAEDFGEAAPLLKQALQA--APENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAAT 219 (304)
T ss_pred hhhhhccchhhHHHHHHHHHHh--CcccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcC
Confidence 4456789999999999988764 223356677889999999999999999999984333333333 23333333333
Q ss_pred HHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCcHHHHHHHHHHHhCC
Q 007573 490 ELGELAAKKMRELDPQNSAVYVMLSNLYAAAGMWRDVTRVRLLMKEQG 537 (597)
Q Consensus 490 ~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 537 (597)
.+... ++.-...+|+|...-..++..|...|+.++|.+.+=.+..+.
T Consensus 220 ~~~~~-l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d 266 (304)
T COG3118 220 PEIQD-LQRRLAADPDDVEAALALADQLHLVGRNEAALEHLLALLRRD 266 (304)
T ss_pred CCHHH-HHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence 33322 333446799999999999999999999999999887777654
No 251
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=95.60 E-value=0.038 Score=32.42 Aligned_cols=33 Identities=33% Similarity=0.188 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC
Q 007573 474 GVWGSLLAACVINLNVELGELAAKKMRELDPQN 506 (597)
Q Consensus 474 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~ 506 (597)
..|..+...+...|++++|++.++++++++|++
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~ 34 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKALELDPNN 34 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTS
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHCcCC
Confidence 356667777888888888888888888888764
No 252
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=95.56 E-value=0.34 Score=48.61 Aligned_cols=48 Identities=15% Similarity=0.092 Sum_probs=25.1
Q ss_pred HHHHhcCCHHHHHHHHhhcCCCChhHHHHHHHHHHHcCChhHHHHHHHHh
Q 007573 246 TGFCKVGMLENARLLFERIQPKDCVSFNAMIAGYAQNGVAEEALRLFSGM 295 (597)
Q Consensus 246 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 295 (597)
....++|+++.|.++.+++. +...|..|.....++|+++-|...|.+.
T Consensus 326 eLAl~lg~L~~A~~~a~~~~--~~~~W~~Lg~~AL~~g~~~lAe~c~~k~ 373 (443)
T PF04053_consen 326 ELALQLGNLDIALEIAKELD--DPEKWKQLGDEALRQGNIELAEECYQKA 373 (443)
T ss_dssp HHHHHCT-HHHHHHHCCCCS--THHHHHHHHHHHHHTTBHHHHHHHHHHC
T ss_pred HHHHhcCCHHHHHHHHHhcC--cHHHHHHHHHHHHHcCCHHHHHHHHHhh
Confidence 34445555555555544433 3445555666666666666665555543
No 253
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.52 E-value=1.5 Score=38.98 Aligned_cols=86 Identities=12% Similarity=0.101 Sum_probs=47.3
Q ss_pred HHHHHHHHhhcCCHHHHHHHHhhCC-------CCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHhc----CCCCCchHH
Q 007573 444 YTCLVDILSRAGQLEKAWQITQGMP-------FEADT-GVWGSLLAACVINLNVELGELAAKKMREL----DPQNSAVYV 511 (597)
Q Consensus 444 ~~~l~~~~~~~g~~~~A~~~~~~~~-------~~p~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~p~~~~~~~ 511 (597)
+..+...|.+..++++|-..+.+-. .-|+. ..+.+.+-.+....|+..|.+.++.--++ +|++..+..
T Consensus 153 ~gk~sr~lVrl~kf~Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~le 232 (308)
T KOG1585|consen 153 YGKCSRVLVRLEKFTEAATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLE 232 (308)
T ss_pred HHHhhhHhhhhHHhhHHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHH
Confidence 3444455666666666655544322 11222 23444445555566777777777765443 355566666
Q ss_pred HHHHHHHhcCCcHHHHHHH
Q 007573 512 MLSNLYAAAGMWRDVTRVR 530 (597)
Q Consensus 512 ~l~~~~~~~g~~~~A~~~~ 530 (597)
.|+.+| ..|+.+++.++.
T Consensus 233 nLL~ay-d~gD~E~~~kvl 250 (308)
T KOG1585|consen 233 NLLTAY-DEGDIEEIKKVL 250 (308)
T ss_pred HHHHHh-ccCCHHHHHHHH
Confidence 666665 446666655543
No 254
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.52 E-value=3.8 Score=42.89 Aligned_cols=150 Identities=16% Similarity=0.184 Sum_probs=96.3
Q ss_pred HHHHHHHhcCChHHHHHHHhhcCC--C---CcchHHHHHHHHHhCCChhHHHHHHhhCCCCCcchHHHHHHHHHcCCChH
Q 007573 55 AKISALSRAGKISAARQLFDQMTT--K---DVITWNAIITGYWQNGFLQESKNLFQSMPVKNIVSWNCMIAGCIDNDRID 129 (597)
Q Consensus 55 ~l~~~~~~~g~~~~A~~~~~~~~~--~---~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~~~~~ 129 (597)
--++.+.+.+.+++|+..-+.... + -...+...|..+...|++++|-+..-.|...+..-|..-+..++..+...
T Consensus 361 Dhi~Wll~~k~yeeAl~~~k~~~~~~~~~~i~kv~~~yI~HLl~~~~y~~Aas~~p~m~gn~~~eWe~~V~~f~e~~~l~ 440 (846)
T KOG2066|consen 361 DHIDWLLEKKKYEEALDAAKASIGNEERFVIKKVGKTYIDHLLFEGKYDEAASLCPKMLGNNAAEWELWVFKFAELDQLT 440 (846)
T ss_pred hhHHHHHHhhHHHHHHHHHHhccCCccccchHHHHHHHHHHHHhcchHHHHHhhhHHHhcchHHHHHHHHHHhccccccc
Confidence 347778889999999998887655 2 12357888899999999999999999999888888888888888777665
Q ss_pred HHHHHHccCCC-CChhhHHHHHHHHHcCCChHHHHHHHccCCC--------------------CCchhHHHHHHHHHhCC
Q 007573 130 DAFDYFQAMPE-RNTATYNAMISGFLKHGRLEEATRLFEQMPR--------------------RNVISYTAMLDGFMKKG 188 (597)
Q Consensus 130 ~A~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--------------------~~~~~~~~li~~~~~~g 188 (597)
....++=.-.+ -++.+|..++..+.. .+...-.++..+.+. .+...-..|+..|...+
T Consensus 441 ~Ia~~lPt~~~rL~p~vYemvLve~L~-~~~~~F~e~i~~Wp~~Lys~l~iisa~~~q~~q~Se~~~L~e~La~LYl~d~ 519 (846)
T KOG2066|consen 441 DIAPYLPTGPPRLKPLVYEMVLVEFLA-SDVKGFLELIKEWPGHLYSVLTIISATEPQIKQNSESTALLEVLAHLYLYDN 519 (846)
T ss_pred hhhccCCCCCcccCchHHHHHHHHHHH-HHHHHHHHHHHhCChhhhhhhHHHhhcchHHHhhccchhHHHHHHHHHHHcc
Confidence 44333322222 356778877777766 333333333332221 11122333556666666
Q ss_pred ChhHHHHHHHhcccCCc
Q 007573 189 EVDKARALSDYMSFKNV 205 (597)
Q Consensus 189 ~~~~A~~~~~~m~~~~~ 205 (597)
++..|+.++-....+++
T Consensus 520 ~Y~~Al~~ylklk~~~v 536 (846)
T KOG2066|consen 520 KYEKALPIYLKLQDKDV 536 (846)
T ss_pred ChHHHHHHHHhccChHH
Confidence 66666666555544433
No 255
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=95.46 E-value=3.3 Score=42.30 Aligned_cols=155 Identities=19% Similarity=0.082 Sum_probs=98.1
Q ss_pred hHHHHHHHHHhCCChhHHHHHHHhcccC-Cc---------chHHHHHHHHHc----CCChHHHHHHHhhcCCCCCCchHH
Q 007573 176 SYTAMLDGFMKKGEVDKARALSDYMSFK-NV---------VSWTVMITGYVK----NERFCEARELFYRMPDYDKNVFVV 241 (597)
Q Consensus 176 ~~~~li~~~~~~g~~~~A~~~~~~m~~~-~~---------~~~~~ll~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~ 241 (597)
....+++...-.|+-+.+++++....+. +. -.|...+..++. ....+.|.+++..+.+.-|+...|
T Consensus 190 ~~~kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~yP~s~lf 269 (468)
T PF10300_consen 190 KVLKLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKRYPNSALF 269 (468)
T ss_pred HHHHHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHhCCCcHHH
Confidence 3455666666678888888877776332 22 234444433332 456778888888888877777666
Q ss_pred HHH-HHHHHhcCCHHHHHHHHhhcCCC-------ChhHHHHHHHHHHHcCChhHHHHHHHHhHHCCCCCCHHHHHHHHHH
Q 007573 242 TAM-ITGFCKVGMLENARLLFERIQPK-------DCVSFNAMIAGYAQNGVAEEALRLFSGMIKMDMQPDDATLVSVFTA 313 (597)
Q Consensus 242 ~~l-~~~~~~~g~~~~A~~~~~~~~~~-------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~ 313 (597)
... .+.+...|++++|++.|++.... ....+--+.-.+.-..+|++|...|..+.+.. ..+..+|..+..+
T Consensus 270 l~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s-~WSka~Y~Y~~a~ 348 (468)
T PF10300_consen 270 LFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKES-KWSKAFYAYLAAA 348 (468)
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhcc-ccHHHHHHHHHHH
Confidence 443 46667788899999888865431 22344455666777888899988888888754 4455555555544
Q ss_pred Hh-ccchh-------HHHHHHHHHHH
Q 007573 314 CS-ALQLL-------NEGRQSHVLVI 331 (597)
Q Consensus 314 ~~-~~~~~-------~~a~~~~~~~~ 331 (597)
|. ..++. ++|..++.++.
T Consensus 349 c~~~l~~~~~~~~~~~~a~~l~~~vp 374 (468)
T PF10300_consen 349 CLLMLGREEEAKEHKKEAEELFRKVP 374 (468)
T ss_pred HHHhhccchhhhhhHHHHHHHHHHHH
Confidence 42 34444 56666655543
No 256
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=95.43 E-value=2 Score=41.63 Aligned_cols=163 Identities=10% Similarity=0.025 Sum_probs=102.8
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHCC---CCCChHHHHHHHHHHhc---cCcHHHHHHHHHHhHHhcCCCCChHHHHHH
Q 007573 374 NTIIAAFAQHGHYEKALIFFSQMGLNG---FDPDGITFLSLLSACGH---AGKVNESMDLFELMVKVYGIIPSSEHYTCL 447 (597)
Q Consensus 374 ~~li~~~~~~g~~~~A~~~~~~m~~~g---~~p~~~~~~~ll~~~~~---~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l 447 (597)
..++-+|....+++..+++.+.+.... +.-....--...-++.+ .|+.++|.+++..+... .-.+++++|..+
T Consensus 145 ~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~-~~~~~~d~~gL~ 223 (374)
T PF13281_consen 145 INLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLES-DENPDPDTLGLL 223 (374)
T ss_pred HHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhc-cCCCChHHHHHH
Confidence 345557888999999999999998642 11112222233345556 89999999999985554 667788899888
Q ss_pred HHHHhh---------cCCHHHHHHHHhhC-CCCCCHHHHHHHHHHHHhcCC-H---HHHHHHH----HHHHhcC---C-C
Q 007573 448 VDILSR---------AGQLEKAWQITQGM-PFEADTGVWGSLLAACVINLN-V---ELGELAA----KKMRELD---P-Q 505 (597)
Q Consensus 448 ~~~~~~---------~g~~~~A~~~~~~~-~~~p~~~~~~~l~~~~~~~g~-~---~~a~~~~----~~~~~~~---p-~ 505 (597)
+..|.. ...+++|...|.+. ..+|+...--.++......|. + .+..++. ..+.+.+ + .
T Consensus 224 GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~~~~~Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg~~~~~~ 303 (374)
T PF13281_consen 224 GRIYKDLFLESNFTDRESLDKAIEWYRKGFEIEPDYYSGINAATLLMLAGHDFETSEELRKIGVKLSSLLGRKGSLEKMQ 303 (374)
T ss_pred HHHHHHHHHHcCccchHHHHHHHHHHHHHHcCCccccchHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhhccccccc
Confidence 877742 22477888888764 355664432222222333332 1 1222222 1111221 1 2
Q ss_pred CCchHHHHHHHHHhcCCcHHHHHHHHHHHhCC
Q 007573 506 NSAVYVMLSNLYAAAGMWRDVTRVRLLMKEQG 537 (597)
Q Consensus 506 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 537 (597)
+-..+..++.+..-.|+.++|.+..++|....
T Consensus 304 dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l~ 335 (374)
T PF13281_consen 304 DYWDVATLLEASVLAGDYEKAIQAAEKAFKLK 335 (374)
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcC
Confidence 35556788999999999999999999998653
No 257
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.31 E-value=0.18 Score=45.65 Aligned_cols=96 Identities=19% Similarity=0.162 Sum_probs=55.2
Q ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHCCCC--CChHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCC-hHHHHHHH
Q 007573 372 SWNTIIAAFAQHGHYEKALIFFSQMGLNGFD--PDGITFLSLLSACGHAGKVNESMDLFELMVKVYGIIPS-SEHYTCLV 448 (597)
Q Consensus 372 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~--p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~ 448 (597)
.|+.-+.. .+.|++.+|...|...++.... -....+..|..++...|++++|..+|..+.+.++-.|. ++.+-.|.
T Consensus 144 ~Y~~A~~~-~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg 222 (262)
T COG1729 144 LYNAALDL-YKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLG 222 (262)
T ss_pred HHHHHHHH-HHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHH
Confidence 35554443 3456677777777777764211 01234555667777777777777777777666554444 35555555
Q ss_pred HHHhhcCCHHHHHHHHhhCC
Q 007573 449 DILSRAGQLEKAWQITQGMP 468 (597)
Q Consensus 449 ~~~~~~g~~~~A~~~~~~~~ 468 (597)
....+.|+.++|...++++.
T Consensus 223 ~~~~~l~~~d~A~atl~qv~ 242 (262)
T COG1729 223 VSLGRLGNTDEACATLQQVI 242 (262)
T ss_pred HHHHHhcCHHHHHHHHHHHH
Confidence 55555555555555555443
No 258
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=95.24 E-value=4 Score=41.47 Aligned_cols=366 Identities=13% Similarity=0.059 Sum_probs=185.1
Q ss_pred CCcchHHHHHHHHHhcCChHHHHHHHhhcCC--CCcc-hHHHHHHHHHhCCChhHHHHHHhhCCCC---CcchHHHHHHH
Q 007573 48 QYVFVNNAKISALSRAGKISAARQLFDQMTT--KDVI-TWNAIITGYWQNGFLQESKNLFQSMPVK---NIVSWNCMIAG 121 (597)
Q Consensus 48 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~-~~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~ll~~ 121 (597)
-+...|..||.---.....+.++.+++.+.. |..+ -|-....-=.+-|..+.+..+|++..+- .+..|...+..
T Consensus 43 ~~f~~wt~li~~~~~~~~~~~~r~~y~~fL~kyPl~~gyW~kfA~~E~klg~~~~s~~Vfergv~aip~SvdlW~~Y~~f 122 (577)
T KOG1258|consen 43 LDFDAWTTLIQENDSIEDVDALREVYDIFLSKYPLCYGYWKKFADYEYKLGNAENSVKVFERGVQAIPLSVDLWLSYLAF 122 (577)
T ss_pred hcccchHHHHhccCchhHHHHHHHHHHHHHhhCccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhhhHHHHHHHHHHH
Confidence 4445666666655555556777777777765 5444 2444444456667778888888877643 55556555554
Q ss_pred HH-cCCChHHHHHHHccCC------CCChhhHHHHHHHHHcCCChHHHHHHHccCCCCCchhHHHHHHHHHh---C----
Q 007573 122 CI-DNDRIDDAFDYFQAMP------ERNTATYNAMISGFLKHGRLEEATRLFEQMPRRNVISYTAMLDGFMK---K---- 187 (597)
Q Consensus 122 ~~-~~~~~~~A~~~~~~~~------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~---~---- 187 (597)
+. ..|+.+.....|++.. -.+...|...|..-..++++.....+++++.+-....++..-.-|.+ .
T Consensus 123 ~~n~~~d~~~lr~~fe~A~~~vG~dF~S~~lWdkyie~en~qks~k~v~~iyeRileiP~~~~~~~f~~f~~~l~~~~~~ 202 (577)
T KOG1258|consen 123 LKNNNGDPETLRDLFERAKSYVGLDFLSDPLWDKYIEFENGQKSWKRVANIYERILEIPLHQLNRHFDRFKQLLNQNEEK 202 (577)
T ss_pred HhccCCCHHHHHHHHHHHHHhcccchhccHHHHHHHHHHhccccHHHHHHHHHHHHhhhhhHhHHHHHHHHHHHhcCChh
Confidence 43 4456666666666665 12445666777777777777777777777765222222222221111 1
Q ss_pred --CChhHHHHHH-----------------------HhcccCCc---chHHHHH-------HHHHcCCChHHHHHHHhhcC
Q 007573 188 --GEVDKARALS-----------------------DYMSFKNV---VSWTVMI-------TGYVKNERFCEARELFYRMP 232 (597)
Q Consensus 188 --g~~~~A~~~~-----------------------~~m~~~~~---~~~~~ll-------~~~~~~g~~~~a~~~~~~~~ 232 (597)
-..+++.++- +....|.. ..-+.+. ..+.......+....++...
T Consensus 203 ~l~~~d~~~~l~~~~~~~~~~~~~~~~~e~~~~~v~~~~~~s~~l~~~~~~l~~~~~~~~~~~~~s~~~~~kr~~fE~~I 282 (577)
T KOG1258|consen 203 ILLSIDELIQLRSDVAERSKITHSQEPLEELEIGVKDSTDPSKSLTEEKTILKRIVSIHEKVYQKSEEEEEKRWGFEEGI 282 (577)
T ss_pred hhcCHHHHHHHhhhHHhhhhcccccChhHHHHHHHhhccCccchhhHHHHHHHHHHHHHHHHHHhhHhHHHHHHhhhhhc
Confidence 1112211111 11111110 0111111 11222222233333333332
Q ss_pred C-----CCC----CchHHHHHHHHHHhcCCHHHHHHHHhhcCCC---ChhHHHHHHHHHHHcCChhHHHHHHHHhHHCCC
Q 007573 233 D-----YDK----NVFVVTAMITGFCKVGMLENARLLFERIQPK---DCVSFNAMIAGYAQNGVAEEALRLFSGMIKMDM 300 (597)
Q Consensus 233 ~-----~~~----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~ 300 (597)
+ .+| +..+|+..+..-.+.|+.+...-+|++..-+ =...|-..+.-....|+.+-|-.++....+--+
T Consensus 283 krpYfhvkpl~~aql~nw~~yLdf~i~~g~~~~~~~l~ercli~cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~ 362 (577)
T KOG1258|consen 283 KRPYFHVKPLDQAQLKNWRYYLDFEITLGDFSRVFILFERCLIPCALYDEFWIKYARWMESSGDVSLANNVLARACKIHV 362 (577)
T ss_pred cccccccCcccHHHHHHHHHHhhhhhhcccHHHHHHHHHHHHhHHhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcC
Confidence 2 122 3456777777777888888888888876553 223555556555566777777777766555433
Q ss_pred CCCHHHHHHHHHHHhccchhHHHHHHHHHHHHhCCCCcccHHHHHHHHHHhcCCHHHHH---HHHhccC--CCChhhHHH
Q 007573 301 QPDDATLVSVFTACSALQLLNEGRQSHVLVIRNGFEANVSVCNAVITMYSRCGGILDSE---LAFRQIH--SPNLVSWNT 375 (597)
Q Consensus 301 ~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~---~~~~~~~--~~~~~~~~~ 375 (597)
+-...+-..-..-+-..|+...|..+++.+...- +.-..+-..-+....+.|+.+.+. .++.... ..+....+.
T Consensus 363 k~~~~i~L~~a~f~e~~~n~~~A~~~lq~i~~e~-pg~v~~~l~~~~~e~r~~~~~~~~~~~~l~s~~~~~~~~~~i~~~ 441 (577)
T KOG1258|consen 363 KKTPIIHLLEARFEESNGNFDDAKVILQRIESEY-PGLVEVVLRKINWERRKGNLEDANYKNELYSSIYEGKENNGILEK 441 (577)
T ss_pred CCCcHHHHHHHHHHHhhccHHHHHHHHHHHHhhC-CchhhhHHHHHhHHHHhcchhhhhHHHHHHHHhcccccCcchhHH
Confidence 3333222222223345667777777777776654 333333333445555666666665 3332222 112222222
Q ss_pred HHHH-----HHHcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHH
Q 007573 376 IIAA-----FAQHGHYEKALIFFSQMGLNGFDPDGITFLSLLSAC 415 (597)
Q Consensus 376 li~~-----~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~ 415 (597)
+.-- +.-.++.+.|..++.++.+. ++++...|..++..+
T Consensus 442 l~~~~~r~~~~i~~d~~~a~~~l~~~~~~-~~~~k~~~~~~~~~~ 485 (577)
T KOG1258|consen 442 LYVKFARLRYKIREDADLARIILLEANDI-LPDCKVLYLELIRFE 485 (577)
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHhhhc-CCccHHHHHHHHHHH
Confidence 2111 12245566666666666543 244444455544433
No 259
>PRK09687 putative lyase; Provisional
Probab=95.20 E-value=2.8 Score=39.41 Aligned_cols=21 Identities=14% Similarity=0.471 Sum_probs=9.1
Q ss_pred HHHHHhccCcHHHHHHHHHHhH
Q 007573 411 LLSACGHAGKVNESMDLFELMV 432 (597)
Q Consensus 411 ll~~~~~~g~~~~a~~~~~~~~ 432 (597)
.+.++...|.. +|...+..+.
T Consensus 241 a~~ALg~ig~~-~a~p~L~~l~ 261 (280)
T PRK09687 241 IIEAAGELGDK-TLLPVLDTLL 261 (280)
T ss_pred HHHHHHhcCCH-hHHHHHHHHH
Confidence 34444444443 3444444443
No 260
>PRK15331 chaperone protein SicA; Provisional
Probab=95.20 E-value=0.48 Score=39.60 Aligned_cols=86 Identities=14% Similarity=0.103 Sum_probs=44.4
Q ss_pred HHHcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHH
Q 007573 380 FAQHGHYEKALIFFSQMGLNGFDPDGITFLSLLSACGHAGKVNESMDLFELMVKVYGIIPSSEHYTCLVDILSRAGQLEK 459 (597)
Q Consensus 380 ~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~ 459 (597)
+...|++++|..+|+-+...+ .-+..-+..|..++...+++++|...|...... . .-|+..+-.....|...|+.+.
T Consensus 47 ~y~~Gk~~eA~~~F~~L~~~d-~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l-~-~~dp~p~f~agqC~l~l~~~~~ 123 (165)
T PRK15331 47 FYNQGRLDEAETFFRFLCIYD-FYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTL-L-KNDYRPVFFTGQCQLLMRKAAK 123 (165)
T ss_pred HHHCCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-c-cCCCCccchHHHHHHHhCCHHH
Confidence 345566666666666655432 223333444555555556666666666554432 1 1223333344555566666666
Q ss_pred HHHHHhhCC
Q 007573 460 AWQITQGMP 468 (597)
Q Consensus 460 A~~~~~~~~ 468 (597)
|+..|+...
T Consensus 124 A~~~f~~a~ 132 (165)
T PRK15331 124 ARQCFELVN 132 (165)
T ss_pred HHHHHHHHH
Confidence 666655544
No 261
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=95.12 E-value=5.1 Score=47.61 Aligned_cols=312 Identities=9% Similarity=0.022 Sum_probs=164.6
Q ss_pred HHHHHHHcCCChHHHHHHHhhcCC----CCCCchHHHHHHHHHHhcCCHHHHHHHHhh-cCCCChhHHHHHHHHHHHcCC
Q 007573 210 VMITGYVKNERFCEARELFYRMPD----YDKNVFVVTAMITGFCKVGMLENARLLFER-IQPKDCVSFNAMIAGYAQNGV 284 (597)
Q Consensus 210 ~ll~~~~~~g~~~~a~~~~~~~~~----~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~-~~~~~~~~~~~li~~~~~~g~ 284 (597)
++..+-.+.+.+..|...++.-.. .......+-.+...|+..++++...-+... ...++ ...-|......|+
T Consensus 1388 tLa~aSfrc~~y~RalmylEs~~~~ek~~~~~e~l~fllq~lY~~i~dpDgV~Gv~~~r~a~~s---l~~qil~~e~~g~ 1464 (2382)
T KOG0890|consen 1388 TLARASFRCKAYARALMYLESHRSTEKEKETEEALYFLLQNLYGSIHDPDGVEGVSARRFADPS---LYQQILEHEASGN 1464 (2382)
T ss_pred HHHHHHHhhHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHhcCCcchhhhHHHHhhcCcc---HHHHHHHHHhhcc
Confidence 445556677888888888887321 111223344455588888888777766663 33332 2234445667788
Q ss_pred hhHHHHHHHHhHHCCCCCCHHHHHHHHHHHhccchhHHHHHHHHHHHHhCCCCcccH-HHHHHHHHHhcCCHHHHHHHHh
Q 007573 285 AEEALRLFSGMIKMDMQPDDATLVSVFTACSALQLLNEGRQSHVLVIRNGFEANVSV-CNAVITMYSRCGGILDSELAFR 363 (597)
Q Consensus 285 ~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~g~~~~A~~~~~ 363 (597)
+..|...|+++.+.+ ++...+++-++......+.++...-..+-..... .+.... ++.=+.+-.+.++++.......
T Consensus 1465 ~~da~~Cye~~~q~~-p~~~~~~~g~l~sml~~~~l~t~i~~~dg~~~~~-se~~~~~~s~~~eaaW~l~qwD~~e~~l~ 1542 (2382)
T KOG0890|consen 1465 WADAAACYERLIQKD-PDKEKHHSGVLKSMLAIQHLSTEILHLDGLIINR-SEEVDELNSLGVEAAWRLSQWDLLESYLS 1542 (2382)
T ss_pred HHHHHHHHHHhhcCC-CccccchhhHHHhhhcccchhHHHhhhcchhhcc-CHHHHHHHHHHHHHHhhhcchhhhhhhhh
Confidence 999999999888764 2335566666666555565555544333222221 222222 2333444567777777766655
Q ss_pred ccCCCChhhHHHH--HHHHHHcC--CHHHHHHHHHHHHHCCCCC--------C-hHHHHHHHHHHhccCcHHHHHHHHHH
Q 007573 364 QIHSPNLVSWNTI--IAAFAQHG--HYEKALIFFSQMGLNGFDP--------D-GITFLSLLSACGHAGKVNESMDLFEL 430 (597)
Q Consensus 364 ~~~~~~~~~~~~l--i~~~~~~g--~~~~A~~~~~~m~~~g~~p--------~-~~~~~~ll~~~~~~g~~~~a~~~~~~ 430 (597)
..+..+|... +....+.. +.-.-.+.++.+++.-+.| + ...|..++....-.. .+.-.+
T Consensus 1543 ---~~n~e~w~~~~~g~~ll~~~~kD~~~~~~~i~~~r~~~i~~lsa~s~~~Sy~~~Y~~~~kLH~l~e-l~~~~~---- 1614 (2382)
T KOG0890|consen 1543 ---DRNIEYWSVESIGKLLLRNKKKDEIATLDLIENSRELVIENLSACSIEGSYVRSYEILMKLHLLLE-LENSIE---- 1614 (2382)
T ss_pred ---cccccchhHHHHHHHHHhhcccchhhHHHHHHHHHHHhhhhHHHhhccchHHHHHHHHHHHHHHHH-HHHHHH----
Confidence 4455555554 22222222 2111222333333221111 0 122333332221110 000011
Q ss_pred hHHhcCCCCC------hHHHHHHHHHHhhcCCHHHHHHHHhh----CCCCC-----CHHHHHHHHHHHHhcCCHHHHHHH
Q 007573 431 MVKVYGIIPS------SEHYTCLVDILSRAGQLEKAWQITQG----MPFEA-----DTGVWGSLLAACVINLNVELGELA 495 (597)
Q Consensus 431 ~~~~~~~~p~------~~~~~~l~~~~~~~g~~~~A~~~~~~----~~~~p-----~~~~~~~l~~~~~~~g~~~~a~~~ 495 (597)
...+..++ ...|..-+..-....+..+-.--+++ ....| -..+|......++..|.++.|...
T Consensus 1615 --~l~~~s~~~~s~~~sd~W~~Rl~~tq~s~~~~epILa~RRs~l~~~~~~~~~~~~ge~wLqsAriaR~aG~~q~A~na 1692 (2382)
T KOG0890|consen 1615 --ELKKVSYDEDSANNSDNWKNRLERTQPSFRIKEPILAFRRSMLDLRMRSNLKSRLGECWLQSARIARLAGHLQRAQNA 1692 (2382)
T ss_pred --HhhccCccccccccchhHHHHHHHhchhHHHHhHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHhcccHHHHHHH
Confidence 11122332 11122111111111111111111111 11122 245899999999999999999999
Q ss_pred HHHHHhcCCCCCchHHHHHHHHHhcCCcHHHHHHHHHHHhCCC
Q 007573 496 AKKMRELDPQNSAVYVMLSNLYAAAGMWRDVTRVRLLMKEQGV 538 (597)
Q Consensus 496 ~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 538 (597)
+-++.+.. .+.++.-.+..+...|+...|+.+++...+...
T Consensus 1693 ll~A~e~r--~~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~~~ 1733 (2382)
T KOG0890|consen 1693 LLNAKESR--LPEIVLERAKLLWQTGDELNALSVLQEILSKNF 1733 (2382)
T ss_pred HHhhhhcc--cchHHHHHHHHHHhhccHHHHHHHHHHHHHhhc
Confidence 98888877 467889999999999999999999999987543
No 262
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=95.11 E-value=2.4 Score=38.18 Aligned_cols=163 Identities=19% Similarity=0.185 Sum_probs=110.2
Q ss_pred ccHHHHHHHHHHhcCCHHHHHHHHhccCC--CCh-hhHHHHHH-HHHHcCCHHHHHHHHHHHHHCCCCC----ChHHHHH
Q 007573 339 VSVCNAVITMYSRCGGILDSELAFRQIHS--PNL-VSWNTIIA-AFAQHGHYEKALIFFSQMGLNGFDP----DGITFLS 410 (597)
Q Consensus 339 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~-~~~~~li~-~~~~~g~~~~A~~~~~~m~~~g~~p----~~~~~~~ 410 (597)
...+......+...++...+...+..... ++. ........ .+...|+++.|...+.+... ..| ....+..
T Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~~~~ 172 (291)
T COG0457 95 AEALLNLGLLLEALGKYEEALELLEKALALDPDPDLAEALLALGALYELGDYEEALELYEKALE--LDPELNELAEALLA 172 (291)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCcchHHHHHHHHHHHHcCCHHHHHHHHHHHHh--cCCCccchHHHHHH
Confidence 33444444555555556666666665542 221 22222333 67888999999999998855 233 2334444
Q ss_pred HHHHHhccCcHHHHHHHHHHhHHhcCCCC-ChHHHHHHHHHHhhcCCHHHHHHHHhhCC-CCCC-HHHHHHHHHHHHhcC
Q 007573 411 LLSACGHAGKVNESMDLFELMVKVYGIIP-SSEHYTCLVDILSRAGQLEKAWQITQGMP-FEAD-TGVWGSLLAACVINL 487 (597)
Q Consensus 411 ll~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p~-~~~~~~l~~~~~~~g 487 (597)
....+...++.+.+...+....+. ... ....+..+...+...++.+.|...+.... ..|+ ...+..+...+...+
T Consensus 173 ~~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 250 (291)
T COG0457 173 LGALLEALGRYEEALELLEKALKL--NPDDDAEALLNLGLLYLKLGKYEEALEYYEKALELDPDNAEALYNLALLLLELG 250 (291)
T ss_pred hhhHHHHhcCHHHHHHHHHHHHhh--CcccchHHHHHhhHHHHHcccHHHHHHHHHHHHhhCcccHHHHhhHHHHHHHcC
Confidence 444566788999999999888763 233 36778888888889999999999988765 4444 455566666655777
Q ss_pred CHHHHHHHHHHHHhcCCC
Q 007573 488 NVELGELAAKKMRELDPQ 505 (597)
Q Consensus 488 ~~~~a~~~~~~~~~~~p~ 505 (597)
..+.+...+.+..+..|.
T Consensus 251 ~~~~~~~~~~~~~~~~~~ 268 (291)
T COG0457 251 RYEEALEALEKALELDPD 268 (291)
T ss_pred CHHHHHHHHHHHHHhCcc
Confidence 899999999999998887
No 263
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.06 E-value=1.8 Score=38.53 Aligned_cols=54 Identities=17% Similarity=0.250 Sum_probs=27.1
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHCC--C-CCChHHHHHHHHHHhccCcHHHHHHH
Q 007573 373 WNTIIAAFAQHGHYEKALIFFSQMGLNG--F-DPDGITFLSLLSACGHAGKVNESMDL 427 (597)
Q Consensus 373 ~~~li~~~~~~g~~~~A~~~~~~m~~~g--~-~p~~~~~~~ll~~~~~~g~~~~a~~~ 427 (597)
|-..|-.+.-..++..|...++.--+.+ . .-+..+...|+.+| ..|+.+++..+
T Consensus 193 ~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~ay-d~gD~E~~~kv 249 (308)
T KOG1585|consen 193 YVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLTAY-DEGDIEEIKKV 249 (308)
T ss_pred HHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHHHHh-ccCCHHHHHHH
Confidence 3444444555566666666666543322 1 12344555666555 34555554444
No 264
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=94.94 E-value=0.72 Score=37.63 Aligned_cols=115 Identities=16% Similarity=0.115 Sum_probs=60.5
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHCCC--CCChHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhc
Q 007573 377 IAAFAQHGHYEKALIFFSQMGLNGF--DPDGITFLSLLSACGHAGKVNESMDLFELMVKVYGIIPSSEHYTCLVDILSRA 454 (597)
Q Consensus 377 i~~~~~~g~~~~A~~~~~~m~~~g~--~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~ 454 (597)
.....+.|++++|.+.|+.+...-. +-....-..++.++.+.+++++|...+++.++.+.-.|+. -|...+.+++.-
T Consensus 17 a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~v-dYa~Y~~gL~~~ 95 (142)
T PF13512_consen 17 AQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNV-DYAYYMRGLSYY 95 (142)
T ss_pred HHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCc-cHHHHHHHHHHH
Confidence 3344556777777777777665311 1123445566667777777777777777776654444442 233333333222
Q ss_pred CCHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCC
Q 007573 455 GQLEKAWQITQGMPFEADTGVWGSLLAACVINLNVELGELAAKKMRELDPQNS 507 (597)
Q Consensus 455 g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~ 507 (597)
...+... ..+. ..-...+....|...|+++++.-|++.
T Consensus 96 ~~~~~~~---~~~~------------~~drD~~~~~~A~~~f~~lv~~yP~S~ 133 (142)
T PF13512_consen 96 EQDEGSL---QSFF------------RSDRDPTPARQAFRDFEQLVRRYPNSE 133 (142)
T ss_pred HHhhhHH---hhhc------------ccccCcHHHHHHHHHHHHHHHHCcCCh
Confidence 2111111 1110 111112235688888999998888864
No 265
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=94.93 E-value=7.1 Score=43.14 Aligned_cols=25 Identities=16% Similarity=0.214 Sum_probs=15.4
Q ss_pred HHHHHHHHHhCC--ChhHHHHHHhhCC
Q 007573 84 WNAIITGYWQNG--FLQESKNLFQSMP 108 (597)
Q Consensus 84 ~~~li~~~~~~g--~~~~A~~~~~~~~ 108 (597)
...+|.+|++.+ ..+.|+....+..
T Consensus 793 ~~~ilTs~vk~~~~~ie~aL~kI~~l~ 819 (1265)
T KOG1920|consen 793 NLFILTSYVKSNPPEIEEALQKIKELQ 819 (1265)
T ss_pred hHHHHHHHHhcCcHHHHHHHHHHHHHH
Confidence 345677777776 5566666555554
No 266
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=94.84 E-value=0.51 Score=47.40 Aligned_cols=132 Identities=17% Similarity=0.083 Sum_probs=66.2
Q ss_pred hhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChHHHHHHHHH
Q 007573 371 VSWNTIIAAFAQHGHYEKALIFFSQMGLNGFDPDGITFLSLLSACGHAGKVNESMDLFELMVKVYGIIPSSEHYTCLVDI 450 (597)
Q Consensus 371 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~ 450 (597)
...+.++.-+-+.|.++.|+++.+.- . .-.....+.|+++.|.++.+ ..+++..|..|.+.
T Consensus 296 ~~~~~i~~fL~~~G~~e~AL~~~~D~---------~---~rFeLAl~lg~L~~A~~~a~-------~~~~~~~W~~Lg~~ 356 (443)
T PF04053_consen 296 DQGQSIARFLEKKGYPELALQFVTDP---------D---HRFELALQLGNLDIALEIAK-------ELDDPEKWKQLGDE 356 (443)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHSS-H---------H---HHHHHHHHCT-HHHHHHHCC-------CCSTHHHHHHHHHH
T ss_pred hHHHHHHHHHHHCCCHHHHHhhcCCh---------H---HHhHHHHhcCCHHHHHHHHH-------hcCcHHHHHHHHHH
Confidence 33555555566666666666553221 1 11222335566666665532 12355566666666
Q ss_pred HhhcCCHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCcHHHHHHH
Q 007573 451 LSRAGQLEKAWQITQGMPFEADTGVWGSLLAACVINLNVELGELAAKKMRELDPQNSAVYVMLSNLYAAAGMWRDVTRVR 530 (597)
Q Consensus 451 ~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~ 530 (597)
..+.|+++-|++.+++.. -|..|+-.|...|+.+.-.++.+.+.+.+- ++....++.-.|+.++..+++
T Consensus 357 AL~~g~~~lAe~c~~k~~------d~~~L~lLy~~~g~~~~L~kl~~~a~~~~~-----~n~af~~~~~lgd~~~cv~lL 425 (443)
T PF04053_consen 357 ALRQGNIELAEECYQKAK------DFSGLLLLYSSTGDREKLSKLAKIAEERGD-----INIAFQAALLLGDVEECVDLL 425 (443)
T ss_dssp HHHTTBHHHHHHHHHHCT-------HHHHHHHHHHCT-HHHHHHHHHHHHHTT------HHHHHHHHHHHT-HHHHHHHH
T ss_pred HHHcCCHHHHHHHHHhhc------CccccHHHHHHhCCHHHHHHHHHHHHHccC-----HHHHHHHHHHcCCHHHHHHHH
Confidence 666666666666666654 244445555556666555555555444332 333344444556666666655
Q ss_pred HH
Q 007573 531 LL 532 (597)
Q Consensus 531 ~~ 532 (597)
.+
T Consensus 426 ~~ 427 (443)
T PF04053_consen 426 IE 427 (443)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 267
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=94.72 E-value=3.9 Score=38.72 Aligned_cols=92 Identities=8% Similarity=0.103 Sum_probs=48.3
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHhHHC-CCCCC---HHHHHHHHHHHhccchhHHHHHHHHHHHHhCC-----CCcccH
Q 007573 271 SFNAMIAGYAQNGVAEEALRLFSGMIKM-DMQPD---DATLVSVFTACSALQLLNEGRQSHVLVIRNGF-----EANVSV 341 (597)
Q Consensus 271 ~~~~li~~~~~~g~~~~A~~~~~~m~~~-g~~p~---~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~-----~~~~~~ 341 (597)
+|-.+.+++.+--++.+++.+-..-... |..|. -....++-.+....+.++++.+.|+.+.+... .....+
T Consensus 85 a~lnlar~~e~l~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqv 164 (518)
T KOG1941|consen 85 AYLNLARSNEKLCEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQV 164 (518)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeeh
Confidence 5556666666666666666555443321 22221 11222344555566667777766666554321 112455
Q ss_pred HHHHHHHHHhcCCHHHHHHHH
Q 007573 342 CNAVITMYSRCGGILDSELAF 362 (597)
Q Consensus 342 ~~~l~~~~~~~g~~~~A~~~~ 362 (597)
+..|...|.+..++++|.-+.
T Consensus 165 cv~Lgslf~~l~D~~Kal~f~ 185 (518)
T KOG1941|consen 165 CVSLGSLFAQLKDYEKALFFP 185 (518)
T ss_pred hhhHHHHHHHHHhhhHHhhhh
Confidence 666666666666666665443
No 268
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=94.67 E-value=1.8 Score=34.52 Aligned_cols=65 Identities=11% Similarity=0.214 Sum_probs=43.5
Q ss_pred hhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCC
Q 007573 371 VSWNTIIAAFAQHGHYEKALIFFSQMGLNGFDPDGITFLSLLSACGHAGKVNESMDLFELMVKVYGI 437 (597)
Q Consensus 371 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~ 437 (597)
......+..+...|+-++-.+++..+.+.+ .+++.....+..+|.+.|+..++.+++.++.+. |+
T Consensus 87 e~vD~ALd~lv~~~kkDqLdki~~~l~kn~-~~~p~~L~kia~Ay~klg~~r~~~ell~~ACek-G~ 151 (161)
T PF09205_consen 87 EYVDLALDILVKQGKKDQLDKIYNELKKNE-EINPEFLVKIANAYKKLGNTREANELLKEACEK-GL 151 (161)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHT-T-
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHhhcc-CCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHh-ch
Confidence 334555677778888888888888876533 677788888888888888888888888887765 54
No 269
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.66 E-value=0.35 Score=44.85 Aligned_cols=160 Identities=13% Similarity=-0.024 Sum_probs=119.1
Q ss_pred HcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChHHHHH----HHHHHhhcCCH
Q 007573 382 QHGHYEKALIFFSQMGLNGFDPDGITFLSLLSACGHAGKVNESMDLFELMVKVYGIIPSSEHYTC----LVDILSRAGQL 457 (597)
Q Consensus 382 ~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~----l~~~~~~~g~~ 457 (597)
.+|+..+|...++++.+. .+.|...+...-.+|...|+...-...++++.- ...|+...|.. +...+..+|-+
T Consensus 115 ~~g~~h~a~~~wdklL~d-~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip--~wn~dlp~~sYv~GmyaFgL~E~g~y 191 (491)
T KOG2610|consen 115 GRGKHHEAAIEWDKLLDD-YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIP--KWNADLPCYSYVHGMYAFGLEECGIY 191 (491)
T ss_pred ccccccHHHHHHHHHHHh-CchhhhhhhhhhhHHHhccchhhhhhHHHHhcc--ccCCCCcHHHHHHHHHHhhHHHhccc
Confidence 478888998999998865 466777788888899999999998888888775 33566544433 44455689999
Q ss_pred HHHHHHHhhCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC----CchHHHHHHHHHhcCCcHHHHHHHH
Q 007573 458 EKAWQITQGMP--FEADTGVWGSLLAACVINLNVELGELAAKKMRELDPQN----SAVYVMLSNLYAAAGMWRDVTRVRL 531 (597)
Q Consensus 458 ~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~----~~~~~~l~~~~~~~g~~~~A~~~~~ 531 (597)
++|++.-++.. .+.|...-.++.......|++.++.++..+--..=... ...|-..+-.+...+.++.|.++|+
T Consensus 192 ~dAEk~A~ralqiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleIyD 271 (491)
T KOG2610|consen 192 DDAEKQADRALQINRFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEIYD 271 (491)
T ss_pred hhHHHHHHhhccCCCcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHHHH
Confidence 99999988765 34466677778888888999999998876654321111 4556677778888999999999999
Q ss_pred HHHhCCCccCCCe
Q 007573 532 LMKEQGVTKQCAY 544 (597)
Q Consensus 532 ~~~~~~~~~~~~~ 544 (597)
+-.-+.+.+..+.
T Consensus 272 ~ei~k~l~k~Da~ 284 (491)
T KOG2610|consen 272 REIWKRLEKDDAV 284 (491)
T ss_pred HHHHHHhhccchh
Confidence 8766666565553
No 270
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=94.64 E-value=0.39 Score=43.46 Aligned_cols=106 Identities=21% Similarity=0.212 Sum_probs=80.9
Q ss_pred HHHHHhccC--CCChhhHHHHHHHHHH-----cCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHhccCc----------
Q 007573 358 SELAFRQIH--SPNLVSWNTIIAAFAQ-----HGHYEKALIFFSQMGLNGFDPDGITFLSLLSACGHAGK---------- 420 (597)
Q Consensus 358 A~~~~~~~~--~~~~~~~~~li~~~~~-----~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~---------- 420 (597)
.+..|.... +.|-.+|..++..+.. .+..+=....++.|.+-|+.-|..+|..|++.+-+..-
T Consensus 53 ~e~~F~aa~~~~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~F 132 (406)
T KOG3941|consen 53 VEKQFEAAEPEKRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQKVF 132 (406)
T ss_pred hhhhhhccCcccccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHHHH
Confidence 345555555 5677788888887764 35667777788999999999999999999998765432
Q ss_pred ------HHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHH-HHHHHH
Q 007573 421 ------VNESMDLFELMVKVYGIIPSSEHYTCLVDILSRAGQLE-KAWQIT 464 (597)
Q Consensus 421 ------~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~-~A~~~~ 464 (597)
-+-++.++++|.-. |+.||.++-..|++++++.+..- +..++.
T Consensus 133 ~HYP~QQ~C~I~vLeqME~h-GVmPdkE~e~~lvn~FGr~~~p~~K~~Rm~ 182 (406)
T KOG3941|consen 133 LHYPQQQNCAIKVLEQMEWH-GVMPDKEIEDILVNAFGRWNFPTKKVKRML 182 (406)
T ss_pred hhCchhhhHHHHHHHHHHHc-CCCCchHHHHHHHHHhccccccHHHHHHHH
Confidence 24478899999765 99999999999999999988643 344443
No 271
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=94.59 E-value=0.27 Score=39.57 Aligned_cols=61 Identities=13% Similarity=0.215 Sum_probs=28.1
Q ss_pred HHHHHHHHHHhccCcHHHHHHHHHHhH--------------HhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHhh
Q 007573 406 ITFLSLLSACGHAGKVNESMDLFELMV--------------KVYGIIPSSEHYTCLVDILSRAGQLEKAWQITQG 466 (597)
Q Consensus 406 ~~~~~ll~~~~~~g~~~~a~~~~~~~~--------------~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~ 466 (597)
.++..++.++++.|+++....+.+..= ......|+..+..+++.+|+..|++..|.++++.
T Consensus 3 ~~~~~ii~al~r~g~~~~i~~~i~~~WgI~~~~~~~~~~~~~~spl~Pt~~lL~AIv~sf~~n~~i~~al~~vd~ 77 (126)
T PF12921_consen 3 ELLCNIIYALGRSGQLDSIKSYIKSVWGIDVNGKKKEGDYPPSSPLYPTSRLLIAIVHSFGYNGDIFSALKLVDF 77 (126)
T ss_pred HHHHHHHHHHhhcCCHHHHHHHHHHhcCCCCCCccccCccCCCCCCCCCHHHHHHHHHHHHhcccHHHHHHHHHH
Confidence 344555555555555555544443221 1113344444555555555555555555444443
No 272
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=94.40 E-value=0.56 Score=44.08 Aligned_cols=53 Identities=9% Similarity=0.048 Sum_probs=25.0
Q ss_pred HHHHhcCCHHHHHHHHHHHHhcC--CCC----CchHHHHHHHHHhcCCcHHHHHHHHHH
Q 007573 481 AACVINLNVELGELAAKKMRELD--PQN----SAVYVMLSNLYAAAGMWRDVTRVRLLM 533 (597)
Q Consensus 481 ~~~~~~g~~~~a~~~~~~~~~~~--p~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~ 533 (597)
-++...|..-.|.+..+++.++. ..| ......++++|...|+.|.|..-|+..
T Consensus 214 ValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR~~gd~e~af~rYe~A 272 (518)
T KOG1941|consen 214 VALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIYRSRGDLERAFRRYEQA 272 (518)
T ss_pred HHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhcccHhHHHHHHHHH
Confidence 34455555555555555554431 122 122234555555555555555544443
No 273
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=94.34 E-value=0.31 Score=38.46 Aligned_cols=90 Identities=13% Similarity=0.061 Sum_probs=56.0
Q ss_pred HHhccCcHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHhhCC--CCCC-H---HHHHHHHHHHHhcC
Q 007573 414 ACGHAGKVNESMDLFELMVKVYGIIPSSEHYTCLVDILSRAGQLEKAWQITQGMP--FEAD-T---GVWGSLLAACVINL 487 (597)
Q Consensus 414 ~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~p~-~---~~~~~l~~~~~~~g 487 (597)
+....|+++.|++.|.+... -.+-....||.-..++.-.|+.++|++-+++.. ..|. . ..|..-...|...|
T Consensus 52 alaE~g~Ld~AlE~F~qal~--l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g 129 (175)
T KOG4555|consen 52 ALAEAGDLDGALELFGQALC--LAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLG 129 (175)
T ss_pred HHHhccchHHHHHHHHHHHH--hcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhC
Confidence 44566677777777766653 122345667777777777777777766666543 1121 1 13334445577888
Q ss_pred CHHHHHHHHHHHHhcCCC
Q 007573 488 NVELGELAAKKMRELDPQ 505 (597)
Q Consensus 488 ~~~~a~~~~~~~~~~~p~ 505 (597)
+.+.|..-|+.+-+++.+
T Consensus 130 ~dd~AR~DFe~AA~LGS~ 147 (175)
T KOG4555|consen 130 NDDAARADFEAAAQLGSK 147 (175)
T ss_pred chHHHHHhHHHHHHhCCH
Confidence 888888888888877765
No 274
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=93.94 E-value=2.9 Score=34.48 Aligned_cols=123 Identities=11% Similarity=0.177 Sum_probs=64.3
Q ss_pred HHHHHHHHHhcCChHHHHHHHhhcCC---CCcchHHHHHHHHHhCCChhHHHHHHhhCCCCCcchHHHHHHHHHcCCChH
Q 007573 53 NNAKISALSRAGKISAARQLFDQMTT---KDVITWNAIITGYWQNGFLQESKNLFQSMPVKNIVSWNCMIAGCIDNDRID 129 (597)
Q Consensus 53 ~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~~~~~ 129 (597)
...++..+...+........++.+.. .++...|.++..|++. +..+.+..++. ..+......+++.|.+.+-++
T Consensus 10 ~~~vv~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~li~ly~~~-~~~~ll~~l~~--~~~~yd~~~~~~~c~~~~l~~ 86 (140)
T smart00299 10 VSEVVELFEKRNLLEELIPYLESALKLNSENPALQTKLIELYAKY-DPQKEIERLDN--KSNHYDIEKVGKLCEKAKLYE 86 (140)
T ss_pred HHHHHHHHHhCCcHHHHHHHHHHHHccCccchhHHHHHHHHHHHH-CHHHHHHHHHh--ccccCCHHHHHHHHHHcCcHH
Confidence 34566666666777777777776644 2344567777777654 33444444442 234455555666666666666
Q ss_pred HHHHHHccCCCCChhhHHHHHHHHHcC-CChHHHHHHHccCCCCCchhHHHHHHHHH
Q 007573 130 DAFDYFQAMPERNTATYNAMISGFLKH-GRLEEATRLFEQMPRRNVISYTAMLDGFM 185 (597)
Q Consensus 130 ~A~~~~~~~~~~~~~~~~~l~~~~~~~-g~~~~A~~~~~~~~~~~~~~~~~li~~~~ 185 (597)
++.-++..+.. +...+..+... ++++.|.+.+.+- .++..|..++..+.
T Consensus 87 ~~~~l~~k~~~-----~~~Al~~~l~~~~d~~~a~~~~~~~--~~~~lw~~~~~~~l 136 (140)
T smart00299 87 EAVELYKKDGN-----FKDAIVTLIEHLGNYEKAIEYFVKQ--NNPELWAEVLKALL 136 (140)
T ss_pred HHHHHHHhhcC-----HHHHHHHHHHcccCHHHHHHHHHhC--CCHHHHHHHHHHHH
Confidence 66655555421 11222223323 5555555555542 23445555554443
No 275
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=93.91 E-value=3.1 Score=34.33 Aligned_cols=124 Identities=8% Similarity=0.057 Sum_probs=57.6
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhh
Q 007573 374 NTIIAAFAQHGHYEKALIFFSQMGLNGFDPDGITFLSLLSACGHAGKVNESMDLFELMVKVYGIIPSSEHYTCLVDILSR 453 (597)
Q Consensus 374 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 453 (597)
..++..+...+.......+++.+...+ ..+...++.++..+++.+ .....+.++. . ++.......+..+.+
T Consensus 11 ~~vv~~~~~~~~~~~l~~yLe~~~~~~-~~~~~~~~~li~ly~~~~-~~~ll~~l~~---~----~~~yd~~~~~~~c~~ 81 (140)
T smart00299 11 SEVVELFEKRNLLEELIPYLESALKLN-SENPALQTKLIELYAKYD-PQKEIERLDN---K----SNHYDIEKVGKLCEK 81 (140)
T ss_pred HHHHHHHHhCCcHHHHHHHHHHHHccC-ccchhHHHHHHHHHHHHC-HHHHHHHHHh---c----cccCCHHHHHHHHHH
Confidence 344555555566666666666666554 244555556666555432 2233333321 0 111222334555555
Q ss_pred cCCHHHHHHHHhhCCCCCCHHHHHHHHHHHHhc-CCHHHHHHHHHHHHhcCCCCCchHHHHHHHH
Q 007573 454 AGQLEKAWQITQGMPFEADTGVWGSLLAACVIN-LNVELGELAAKKMRELDPQNSAVYVMLSNLY 517 (597)
Q Consensus 454 ~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~-g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 517 (597)
.+.++++.-++.++.. +...+..+... ++++.|++++.+ +.++..|..++..+
T Consensus 82 ~~l~~~~~~l~~k~~~------~~~Al~~~l~~~~d~~~a~~~~~~-----~~~~~lw~~~~~~~ 135 (140)
T smart00299 82 AKLYEEAVELYKKDGN------FKDAIVTLIEHLGNYEKAIEYFVK-----QNNPELWAEVLKAL 135 (140)
T ss_pred cCcHHHHHHHHHhhcC------HHHHHHHHHHcccCHHHHHHHHHh-----CCCHHHHHHHHHHH
Confidence 5555555555555431 11122222222 556666665554 22344444444443
No 276
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=93.91 E-value=0.12 Score=30.85 Aligned_cols=26 Identities=12% Similarity=0.110 Sum_probs=20.4
Q ss_pred hHHHHHHHHHhcCCcHHHHHHHHHHH
Q 007573 509 VYVMLSNLYAAAGMWRDVTRVRLLMK 534 (597)
Q Consensus 509 ~~~~l~~~~~~~g~~~~A~~~~~~~~ 534 (597)
++..|+.+|.+.|++++|++++++..
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQAL 26 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 36778888888999999988888854
No 277
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=93.76 E-value=11 Score=40.20 Aligned_cols=49 Identities=16% Similarity=0.200 Sum_probs=30.6
Q ss_pred cCCHHHHHHHHHHHHhcC---CCCC-chH-----HHHHHHHHhcCCcHHHHHHHHHHH
Q 007573 486 NLNVELGELAAKKMRELD---PQNS-AVY-----VMLSNLYAAAGMWRDVTRVRLLMK 534 (597)
Q Consensus 486 ~g~~~~a~~~~~~~~~~~---p~~~-~~~-----~~l~~~~~~~g~~~~A~~~~~~~~ 534 (597)
.|+..+..........+. |+.. ..| ..+.+.|...|+.++|.....+..
T Consensus 547 ~~~~~e~~~~s~~a~~~A~k~~d~~~~LW~~v~~~~l~~~~~~~G~~~ka~~~~~~~~ 604 (608)
T PF10345_consen 547 EGDVGEQAKKSARAFQLAKKSSDYSDQLWHLVASGMLADSYEVQGDRDKAEEARQQLD 604 (608)
T ss_pred cCCHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHH
Confidence 677777666655555432 3322 222 245556888899999998887654
No 278
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=93.55 E-value=0.14 Score=30.53 Aligned_cols=28 Identities=11% Similarity=-0.142 Sum_probs=22.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 007573 475 VWGSLLAACVINLNVELGELAAKKMREL 502 (597)
Q Consensus 475 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 502 (597)
+|..|...|...|++++|+.++++++.+
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~l 28 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQALAL 28 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 4678888899999999999999996644
No 279
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=93.44 E-value=16 Score=41.05 Aligned_cols=254 Identities=8% Similarity=0.003 Sum_probs=135.3
Q ss_pred HHHHhhcCCCCcchHHHHHHHHHhCCChhHHHHHHhhCCCCCcchHHHHHHHHHcCCCh-HHHHHHHccCCCCChhhHHH
Q 007573 70 RQLFDQMTTKDVITWNAIITGYWQNGFLQESKNLFQSMPVKNIVSWNCMIAGCIDNDRI-DDAFDYFQAMPERNTATYNA 148 (597)
Q Consensus 70 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~~~~-~~A~~~~~~~~~~~~~~~~~ 148 (597)
..+...+..+|+..-..-+..+.+.+..+..-.+...+..+|...-...+.++.+.+.. .....+...+..+|+.+-..
T Consensus 624 ~~L~~~L~D~d~~VR~~Av~~L~~~~~~~~~~~L~~aL~D~d~~VR~~Aa~aL~~l~~~~~~~~~L~~~L~~~d~~VR~~ 703 (897)
T PRK13800 624 AELAPYLADPDPGVRRTAVAVLTETTPPGFGPALVAALGDGAAAVRRAAAEGLRELVEVLPPAPALRDHLGSPDPVVRAA 703 (897)
T ss_pred HHHHHHhcCCCHHHHHHHHHHHhhhcchhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhccCchHHHHHHhcCCCHHHHHH
Confidence 34444555667666666677776666544223333333344555555555555443221 11122222233456666666
Q ss_pred HHHHHHcCCChHHHHHHHccCCCCCchhHHHHHHHHHhCCChhHHHHHHHhcccCCcchHHHHHHHHHcCCChHH-HHHH
Q 007573 149 MISGFLKHGRLEEATRLFEQMPRRNVISYTAMLDGFMKKGEVDKARALSDYMSFKNVVSWTVMITGYVKNERFCE-AREL 227 (597)
Q Consensus 149 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~ll~~~~~~g~~~~-a~~~ 227 (597)
.+..+...+.. ....+...+..+|...-...+.++.+.+..+. +......++...-...+.++...+..+. +...
T Consensus 704 A~~aL~~~~~~-~~~~l~~~L~D~d~~VR~~Av~aL~~~~~~~~---l~~~l~D~~~~VR~~aa~aL~~~~~~~~~~~~~ 779 (897)
T PRK13800 704 ALDVLRALRAG-DAALFAAALGDPDHRVRIEAVRALVSVDDVES---VAGAATDENREVRIAVAKGLATLGAGGAPAGDA 779 (897)
T ss_pred HHHHHHhhccC-CHHHHHHHhcCCCHHHHHHHHHHHhcccCcHH---HHHHhcCCCHHHHHHHHHHHHHhccccchhHHH
Confidence 66666544321 12234445556676666666777666554432 3333455566666666666666665432 2333
Q ss_pred HhhcCCCCCCchHHHHHHHHHHhcCCHHHHH-HHHhhcCCCChhHHHHHHHHHHHcCChhHHHHHHHHhHHCCCCCCHHH
Q 007573 228 FYRMPDYDKNVFVVTAMITGFCKVGMLENAR-LLFERIQPKDCVSFNAMIAGYAQNGVAEEALRLFSGMIKMDMQPDDAT 306 (597)
Q Consensus 228 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~-~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~ 306 (597)
+..+.+ +++..+..+.+.++.+.|..+.+. .+...+..+|...-...+.++...+. +++...+..+.+ .|+...
T Consensus 780 L~~ll~-D~d~~VR~aA~~aLg~~g~~~~~~~~l~~aL~d~d~~VR~~Aa~aL~~l~~-~~a~~~L~~~L~---D~~~~V 854 (897)
T PRK13800 780 VRALTG-DPDPLVRAAALAALAELGCPPDDVAAATAALRASAWQVRQGAARALAGAAA-DVAVPALVEALT---DPHLDV 854 (897)
T ss_pred HHHHhc-CCCHHHHHHHHHHHHhcCCcchhHHHHHHHhcCCChHHHHHHHHHHHhccc-cchHHHHHHHhc---CCCHHH
Confidence 333322 266777777778888877765442 34444555666566666677766664 445566655554 455555
Q ss_pred HHHHHHHHhccchhHHHHHHHHHHHH
Q 007573 307 LVSVFTACSALQLLNEGRQSHVLVIR 332 (597)
Q Consensus 307 ~~~ll~~~~~~~~~~~a~~~~~~~~~ 332 (597)
-...+.++........+...+..+.+
T Consensus 855 R~~A~~aL~~~~~~~~a~~~L~~al~ 880 (897)
T PRK13800 855 RKAAVLALTRWPGDPAARDALTTALT 880 (897)
T ss_pred HHHHHHHHhccCCCHHHHHHHHHHHh
Confidence 56666666665333345555555444
No 280
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=93.40 E-value=0.18 Score=29.53 Aligned_cols=31 Identities=19% Similarity=0.001 Sum_probs=23.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 007573 475 VWGSLLAACVINLNVELGELAAKKMRELDPQ 505 (597)
Q Consensus 475 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~ 505 (597)
+|..+...+...|++++|...++++++++|+
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~~ 33 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKALELNPD 33 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 5666777777788888888888888877774
No 281
>PRK11619 lytic murein transglycosylase; Provisional
Probab=93.15 E-value=14 Score=39.47 Aligned_cols=453 Identities=10% Similarity=0.002 Sum_probs=230.9
Q ss_pred HHHHHHHHHhcCChHHHHHHHhhcCCCCcch---HHHHHHHHHhCCChhHHHHHHhhCCC-C-CcchHHHHHHHHHcCCC
Q 007573 53 NNAKISALSRAGKISAARQLFDQMTTKDVIT---WNAIITGYWQNGFLQESKNLFQSMPV-K-NIVSWNCMIAGCIDNDR 127 (597)
Q Consensus 53 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~---~~~li~~~~~~g~~~~A~~~~~~~~~-~-~~~~~~~ll~~~~~~~~ 127 (597)
|....++ .+.|++..+.++-..+....... |-.+...+ ....+++...++++-.. | ....-..-+..+.+.++
T Consensus 37 f~~A~~a-~~~g~~~~~~~~~~~l~d~pL~~yl~y~~L~~~l-~~~~~~ev~~Fl~~~~~~P~~~~Lr~~~l~~La~~~~ 114 (644)
T PRK11619 37 YQQIKQA-WDNRQMDVVEQLMPTLKDYPLYPYLEYRQLTQDL-MNQPAVQVTNFIRANPTLPPARSLQSRFVNELARRED 114 (644)
T ss_pred HHHHHHH-HHCCCHHHHHHHHHhccCCCcHhHHHHHHHHhcc-ccCCHHHHHHHHHHCCCCchHHHHHHHHHHHHHHccC
Confidence 3333333 47788888888887776432332 32332221 12345666666666553 2 22222333344556677
Q ss_pred hHHHHHHHccCCCCChhhHHHHHHHHHcCCChHHHHHHHccCC---CCCchhHHHHHHHHHhCCChhHHHHHHHhcccCC
Q 007573 128 IDDAFDYFQAMPERNTATYNAMISGFLKHGRLEEATRLFEQMP---RRNVISYTAMLDGFMKKGEVDKARALSDYMSFKN 204 (597)
Q Consensus 128 ~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 204 (597)
.......+.. .+.+....-....+....|+.++|....+.+= ...+...+.+++.+.+.|......-
T Consensus 115 w~~~~~~~~~-~p~~~~~~c~~~~A~~~~G~~~~A~~~a~~lW~~g~~~p~~cd~l~~~~~~~g~lt~~d~--------- 184 (644)
T PRK11619 115 WRGLLAFSPE-KPKPVEARCNYYYAKWATGQQQEAWQGAKELWLTGKSLPNACDKLFSVWQQSGKQDPLAY--------- 184 (644)
T ss_pred HHHHHHhcCC-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCChHHHHHHHHHHHcCCCCHHHH---------
Confidence 7766663322 24455544556666777777666655444431 2345667777777776666544321
Q ss_pred cchHHHHHHHHHcCCChHHHHHHHhhcCCCCCCc-hHHHHHHHHHHhcCCHHHHHHHHhhcCCCChhHHHHHHHHH--HH
Q 007573 205 VVSWTVMITGYVKNERFCEARELFYRMPDYDKNV-FVVTAMITGFCKVGMLENARLLFERIQPKDCVSFNAMIAGY--AQ 281 (597)
Q Consensus 205 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~--~~ 281 (597)
+ .-+......|+...|..+...+. ++. .....++..+. +...+...+.... ++...-..++.++ ..
T Consensus 185 ---w-~R~~~al~~~~~~lA~~l~~~l~---~~~~~~a~a~~al~~---~p~~~~~~~~~~~-~~~~~~~~~~~~l~Rla 253 (644)
T PRK11619 185 ---L-ERIRLAMKAGNTGLVTYLAKQLP---ADYQTIASALIKLQN---DPNTVETFARTTG-PTDFTRQMAAVAFASVA 253 (644)
T ss_pred ---H-HHHHHHHHCCCHHHHHHHHHhcC---hhHHHHHHHHHHHHH---CHHHHHHHhhccC-CChhhHHHHHHHHHHHH
Confidence 1 22344556777777777766652 221 22333444433 3333444443332 2221111122222 23
Q ss_pred cCChhHHHHHHHHhHHCC-CCCCHHH--HHHHHHHHhccchhHHHHHHHHHHHHhCCCCcccHHHHHHHHHHhcCCHHHH
Q 007573 282 NGVAEEALRLFSGMIKMD-MQPDDAT--LVSVFTACSALQLLNEGRQSHVLVIRNGFEANVSVCNAVITMYSRCGGILDS 358 (597)
Q Consensus 282 ~g~~~~A~~~~~~m~~~g-~~p~~~~--~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 358 (597)
..+.+.|..++....... ..++... ...+.......+....+...+...... ..+..+...-+....+.++++.+
T Consensus 254 r~d~~~A~~~~~~~~~~~~~~~~~~~~~~~~lA~~~a~~~~~~~a~~w~~~~~~~--~~~~~~~e~r~r~Al~~~dw~~~ 331 (644)
T PRK11619 254 RQDAENARLMIPSLVRAQKLNEDQRQELRDIVAWRLMGNDVTDEQAKWRDDVIMR--SQSTSLLERRVRMALGTGDRRGL 331 (644)
T ss_pred HhCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhccCCHHHHHHHHhcccc--cCCcHHHHHHHHHHHHccCHHHH
Confidence 456788999988775443 3333221 222222222221134444444433222 22445555556666688899998
Q ss_pred HHHHhccCC---CChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHhccCcHHHH-HHHHHHhHHh
Q 007573 359 ELAFRQIHS---PNLVSWNTIIAAFAQHGHYEKALIFFSQMGLNGFDPDGITFLSLLSACGHAGKVNES-MDLFELMVKV 434 (597)
Q Consensus 359 ~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a-~~~~~~~~~~ 434 (597)
...+..|.+ ....-.-=+..++...|+.++|...|+++.. .. +|..++.+- +.|..-.- ......-..
T Consensus 332 ~~~i~~L~~~~~~~~rw~YW~aRa~~~~g~~~~A~~~~~~~a~---~~---~fYG~LAa~-~Lg~~~~~~~~~~~~~~~- 403 (644)
T PRK11619 332 NTWLARLPMEAKEKDEWRYWQADLLLEQGRKAEAEEILRQLMQ---QR---GFYPMVAAQ-RLGEEYPLKIDKAPKPDS- 403 (644)
T ss_pred HHHHHhcCHhhccCHhhHHHHHHHHHHcCCHHHHHHHHHHHhc---CC---CcHHHHHHH-HcCCCCCCCCCCCCchhh-
Confidence 888888862 1122222345566668999999999988743 22 344433221 12211000 000000000
Q ss_pred cCCCCChHHHHHHHHHHhhcCCHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC---CCCchHH
Q 007573 435 YGIIPSSEHYTCLVDILSRAGQLEKAWQITQGMPFEADTGVWGSLLAACVINLNVELGELAAKKMRELDP---QNSAVYV 511 (597)
Q Consensus 435 ~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p---~~~~~~~ 511 (597)
.+...+ -..-+..+...|...+|...+..+....+......+.......|..+.++....+....+. .-|..|.
T Consensus 404 -~~~~~~--~~~ra~~L~~~g~~~~a~~ew~~~~~~~~~~~~~~la~~A~~~g~~~~ai~~~~~~~~~~~~~~rfp~~~~ 480 (644)
T PRK11619 404 -ALTQGP--EMARVRELMYWNMDNTARSEWANLVASRSKTEQAQLARYAFNQQWWDLSVQATIAGKLWDHLEERFPLAWN 480 (644)
T ss_pred -hhccCh--HHHHHHHHHHCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCHHHHHHHHhhchhHHHHHHhCCcchH
Confidence 000001 1123455677899999988887765445556666666667788888888887765543211 1244566
Q ss_pred HHHHHHHhcCCcHHHHHHHHHHHhCCCccC
Q 007573 512 MLSNLYAAAGMWRDVTRVRLLMKEQGVTKQ 541 (597)
Q Consensus 512 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 541 (597)
.....+.+.-.++.+.-.---..+++..+.
T Consensus 481 ~~~~~~a~~~~v~~~lv~ai~rqES~f~p~ 510 (644)
T PRK11619 481 DEFRRYTSGKGIPQSYAMAIARQESAWNPK 510 (644)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHhcCCCCC
Confidence 666666666667765543222235555443
No 282
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=92.69 E-value=0.24 Score=31.21 Aligned_cols=31 Identities=16% Similarity=0.177 Sum_probs=27.6
Q ss_pred CchHHHHHHHHHhcCCcHHHHHHHHHHHhCC
Q 007573 507 SAVYVMLSNLYAAAGMWRDVTRVRLLMKEQG 537 (597)
Q Consensus 507 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 537 (597)
|.++..++.+|...|++++|+++++++.+..
T Consensus 1 p~~~~~la~~~~~~G~~~~A~~~~~~~l~~~ 31 (44)
T PF13428_consen 1 PAAWLALARAYRRLGQPDEAERLLRRALALD 31 (44)
T ss_pred CHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 4578899999999999999999999998754
No 283
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=92.65 E-value=1.3 Score=40.28 Aligned_cols=97 Identities=14% Similarity=0.116 Sum_probs=67.6
Q ss_pred HHHHhhcC--CCChhHHHHHHHHHHHc-----CChhHHHHHHHHhHHCCCCCCHHHHHHHHHHHhcc-------------
Q 007573 258 RLLFERIQ--PKDCVSFNAMIAGYAQN-----GVAEEALRLFSGMIKMDMQPDDATLVSVFTACSAL------------- 317 (597)
Q Consensus 258 ~~~~~~~~--~~~~~~~~~li~~~~~~-----g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~------------- 317 (597)
++.|.... ++|-.+|-.++..+... +..+=....++.|.+-|+.-|..+|..+++.+-+.
T Consensus 54 e~~F~aa~~~~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~F~ 133 (406)
T KOG3941|consen 54 EKQFEAAEPEKRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQKVFL 133 (406)
T ss_pred hhhhhccCcccccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHHHHh
Confidence 34455554 45666677666666543 44555556677788888888888888888775422
Q ss_pred ---chhHHHHHHHHHHHHhCCCCcccHHHHHHHHHHhcCC
Q 007573 318 ---QLLNEGRQSHVLVIRNGFEANVSVCNAVITMYSRCGG 354 (597)
Q Consensus 318 ---~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 354 (597)
..-+-+..++++|...|+.||..+-..|++++.+.+-
T Consensus 134 HYP~QQ~C~I~vLeqME~hGVmPdkE~e~~lvn~FGr~~~ 173 (406)
T KOG3941|consen 134 HYPQQQNCAIKVLEQMEWHGVMPDKEIEDILVNAFGRWNF 173 (406)
T ss_pred hCchhhhHHHHHHHHHHHcCCCCchHHHHHHHHHhccccc
Confidence 2334577888889999999999998889988877664
No 284
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=92.62 E-value=1.5 Score=36.64 Aligned_cols=96 Identities=15% Similarity=0.100 Sum_probs=58.3
Q ss_pred HHHHHHH---HHhccCcHHHHHHHHHHhHHhcCCCCC-hHHHHHHHHHHhhcCCHHHHHHHHhhCC-CCCCHHHHHHHHH
Q 007573 407 TFLSLLS---ACGHAGKVNESMDLFELMVKVYGIIPS-SEHYTCLVDILSRAGQLEKAWQITQGMP-FEADTGVWGSLLA 481 (597)
Q Consensus 407 ~~~~ll~---~~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p~~~~~~~l~~ 481 (597)
+...|+. .-...++.+++..++..+.- +.|. +..-..-...+.+.|++.+|..+++++. ..|....-.+|+.
T Consensus 9 iv~gLie~~~~al~~~~~~D~e~lL~ALrv---LRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kALlA 85 (160)
T PF09613_consen 9 IVGGLIEVLSVALRLGDPDDAEALLDALRV---LRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFPYAKALLA 85 (160)
T ss_pred HHHHHHHHHHHHHccCChHHHHHHHHHHHH---hCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChHHHHHHH
Confidence 3444444 34567788888888888864 4454 2222233455778899999999998877 4455555566666
Q ss_pred HHHhcCCHHHHHHHHHHHHhcCCC
Q 007573 482 ACVINLNVELGELAAKKMRELDPQ 505 (597)
Q Consensus 482 ~~~~~g~~~~a~~~~~~~~~~~p~ 505 (597)
.|.....-..=.....++++.+++
T Consensus 86 ~CL~~~~D~~Wr~~A~evle~~~d 109 (160)
T PF09613_consen 86 LCLYALGDPSWRRYADEVLESGAD 109 (160)
T ss_pred HHHHHcCChHHHHHHHHHHhcCCC
Confidence 665443323334445556665553
No 285
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=92.47 E-value=0.29 Score=45.47 Aligned_cols=95 Identities=12% Similarity=0.038 Sum_probs=72.6
Q ss_pred HHHHHhccCcHHHHHHHHHHhHHhcCCCC-ChHHHHHHHHHHhhcCCHHHHHHHHhhCC--CCCCHHHHHHHHHHHHhcC
Q 007573 411 LLSACGHAGKVNESMDLFELMVKVYGIIP-SSEHYTCLVDILSRAGQLEKAWQITQGMP--FEADTGVWGSLLAACVINL 487 (597)
Q Consensus 411 ll~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~g 487 (597)
-.+-|.+.|.+++|+..|...+ .+.| ++.++..-..+|.+..++..|+.-..... .+.-...|..-+.+-...|
T Consensus 103 ~GN~yFKQgKy~EAIDCYs~~i---a~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y~KAYSRR~~AR~~Lg 179 (536)
T KOG4648|consen 103 RGNTYFKQGKYEEAIDCYSTAI---AVYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKLYVKAYSRRMQARESLG 179 (536)
T ss_pred hhhhhhhccchhHHHHHhhhhh---ccCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHh
Confidence 3556888999999999998776 3455 77888888889999999988877666554 1112335666677777788
Q ss_pred CHHHHHHHHHHHHhcCCCCCc
Q 007573 488 NVELGELAAKKMRELDPQNSA 508 (597)
Q Consensus 488 ~~~~a~~~~~~~~~~~p~~~~ 508 (597)
...+|.+-++.++++.|++..
T Consensus 180 ~~~EAKkD~E~vL~LEP~~~E 200 (536)
T KOG4648|consen 180 NNMEAKKDCETVLALEPKNIE 200 (536)
T ss_pred hHHHHHHhHHHHHhhCcccHH
Confidence 999999999999999998543
No 286
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=92.16 E-value=0.91 Score=41.98 Aligned_cols=60 Identities=15% Similarity=0.224 Sum_probs=37.4
Q ss_pred HHHHHHHHHHhhcCCHHHHHHHHhhCC-CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 007573 442 EHYTCLVDILSRAGQLEKAWQITQGMP-FEA-DTGVWGSLLAACVINLNVELGELAAKKMRE 501 (597)
Q Consensus 442 ~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 501 (597)
.++..++..+...|+.+.+...++++. ..| +...|..++.+|...|+...|+..|+++.+
T Consensus 154 ~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~ 215 (280)
T COG3629 154 KALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKK 215 (280)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHH
Confidence 355566666666666666666666654 233 555666666666666666666666666654
No 287
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=92.07 E-value=8.5 Score=37.70 Aligned_cols=66 Identities=15% Similarity=0.138 Sum_probs=56.2
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC----CCchHHHHHHHHHhcCCcHHHHHHHHHHHhCC
Q 007573 472 DTGVWGSLLAACVINLNVELGELAAKKMRELDPQ----NSAVYVMLSNLYAAAGMWRDVTRVRLLMKEQG 537 (597)
Q Consensus 472 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 537 (597)
...+|..+...+.+.|.++.|...+.++...++. .+.+...-+..+...|+.++|...++......
T Consensus 145 ~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~~ 214 (352)
T PF02259_consen 145 LAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKCR 214 (352)
T ss_pred HHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 4568999999999999999999999999986632 36777778999999999999999999888733
No 288
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=91.99 E-value=1.3 Score=36.99 Aligned_cols=83 Identities=13% Similarity=0.072 Sum_probs=52.9
Q ss_pred HHHHHHHHHH---hhcCCHHHHHHHHhhCC-CCCCHHHHHHH-HHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHH
Q 007573 442 EHYTCLVDIL---SRAGQLEKAWQITQGMP-FEADTGVWGSL-LAACVINLNVELGELAAKKMRELDPQNSAVYVMLSNL 516 (597)
Q Consensus 442 ~~~~~l~~~~---~~~g~~~~A~~~~~~~~-~~p~~~~~~~l-~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 516 (597)
.+.+.|++.. .+.++.++++.++..+. .+|.......+ ...+...|++.+|+++++.+.+..|..+..-..++.+
T Consensus 8 ~iv~gLie~~~~al~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kALlA~C 87 (160)
T PF09613_consen 8 EIVGGLIEVLSVALRLGDPDDAEALLDALRVLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFPYAKALLALC 87 (160)
T ss_pred HHHHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChHHHHHHHHH
Confidence 3444554443 35667778887777765 55654433322 2336677888888888888777777666666666777
Q ss_pred HHhcCCcH
Q 007573 517 YAAAGMWR 524 (597)
Q Consensus 517 ~~~~g~~~ 524 (597)
+...|+.+
T Consensus 88 L~~~~D~~ 95 (160)
T PF09613_consen 88 LYALGDPS 95 (160)
T ss_pred HHHcCChH
Confidence 76666654
No 289
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=91.83 E-value=5.8 Score=39.56 Aligned_cols=59 Identities=8% Similarity=-0.061 Sum_probs=36.7
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhcCCCC--CchHHHHHHHHHhcCCcHHHHHHHHHHHh
Q 007573 477 GSLLAACVINLNVELGELAAKKMRELDPQN--SAVYVMLSNLYAAAGMWRDVTRVRLLMKE 535 (597)
Q Consensus 477 ~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 535 (597)
..|..++.+.|+.++|++.++++++..|.. ..+...|+.++...+.+.++..++.+-.+
T Consensus 263 rRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdD 323 (539)
T PF04184_consen 263 RRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDD 323 (539)
T ss_pred HHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhcc
Confidence 445555566666777777776666655542 44566666666667777666666666543
No 290
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=91.61 E-value=9 Score=33.69 Aligned_cols=161 Identities=12% Similarity=-0.003 Sum_probs=91.9
Q ss_pred cccHHHHHHHHHHhcCCHHHHHHHHhccCCCChh-hHHHHHH--HHHHcCCHHHHHHHHHHHHHCCCCCCh--HHHHHHH
Q 007573 338 NVSVCNAVITMYSRCGGILDSELAFRQIHSPNLV-SWNTIIA--AFAQHGHYEKALIFFSQMGLNGFDPDG--ITFLSLL 412 (597)
Q Consensus 338 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~li~--~~~~~g~~~~A~~~~~~m~~~g~~p~~--~~~~~ll 412 (597)
-+.+||-|.-.+...|+++.|.+.|+...+.|+. -|..+=. ++.-.|++.-|.+-+.+.-+.. +.|+ ..|..+
T Consensus 98 m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi~~YY~gR~~LAq~d~~~fYQ~D-~~DPfR~LWLYl- 175 (297)
T COG4785 98 MPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRYKLAQDDLLAFYQDD-PNDPFRSLWLYL- 175 (297)
T ss_pred cHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhccceeeeecCchHhhHHHHHHHHhcC-CCChHHHHHHHH-
Confidence 3567888888888899999999999988754442 2222222 2334688999988887776653 2222 222222
Q ss_pred HHHhccCcHHHHHHHHHHhHHhcCCCCChHHHHHH-HHHHhhcCCHHHHHHHHhhCCC------CCCHHHHHHHHHHHHh
Q 007573 413 SACGHAGKVNESMDLFELMVKVYGIIPSSEHYTCL-VDILSRAGQLEKAWQITQGMPF------EADTGVWGSLLAACVI 485 (597)
Q Consensus 413 ~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l-~~~~~~~g~~~~A~~~~~~~~~------~p~~~~~~~l~~~~~~ 485 (597)
-...-++.+|..-+.+--+ + .|.+-|... +..|.-.=..+.+.+-...-.. +--..+|--|..-+..
T Consensus 176 --~E~k~dP~~A~tnL~qR~~--~--~d~e~WG~~iV~~yLgkiS~e~l~~~~~a~a~~n~~~Ae~LTEtyFYL~K~~l~ 249 (297)
T COG4785 176 --NEQKLDPKQAKTNLKQRAE--K--SDKEQWGWNIVEFYLGKISEETLMERLKADATDNTSLAEHLTETYFYLGKYYLS 249 (297)
T ss_pred --HHhhCCHHHHHHHHHHHHH--h--ccHhhhhHHHHHHHHhhccHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHhc
Confidence 2234466666654433222 2 243444332 2333222222223222222111 1113466677788889
Q ss_pred cCCHHHHHHHHHHHHhcCCCC
Q 007573 486 NLNVELGELAAKKMRELDPQN 506 (597)
Q Consensus 486 ~g~~~~a~~~~~~~~~~~p~~ 506 (597)
.|+.++|..+|+-++..+.-+
T Consensus 250 ~G~~~~A~~LfKLaiannVyn 270 (297)
T COG4785 250 LGDLDEATALFKLAVANNVYN 270 (297)
T ss_pred cccHHHHHHHHHHHHHHhHHH
Confidence 999999999999998766544
No 291
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=91.46 E-value=1.4 Score=36.12 Aligned_cols=72 Identities=8% Similarity=-0.063 Sum_probs=39.1
Q ss_pred hcCCHHHHHHHHhhCC-CCCCHHHHHH-HHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCcH
Q 007573 453 RAGQLEKAWQITQGMP-FEADTGVWGS-LLAACVINLNVELGELAAKKMRELDPQNSAVYVMLSNLYAAAGMWR 524 (597)
Q Consensus 453 ~~g~~~~A~~~~~~~~-~~p~~~~~~~-l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~ 524 (597)
+.+++++++.++..|. ..|+...... -...+...|++++|.++++.+.+..+..+..-..++.++...|+.+
T Consensus 22 ~~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~~~~p~~kAL~A~CL~al~Dp~ 95 (153)
T TIGR02561 22 RSADPYDAQAMLDALRVLRPNLKELDMFDGWLLIARGNYDEAARILRELLSSAGAPPYGKALLALCLNAKGDAE 95 (153)
T ss_pred hcCCHHHHHHHHHHHHHhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhccCCCchHHHHHHHHHHHhcCChH
Confidence 4566666666666654 4444332222 1223556666666666666666655554544455555555555543
No 292
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=91.40 E-value=28 Score=38.91 Aligned_cols=141 Identities=13% Similarity=0.056 Sum_probs=75.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHhccCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHhccCc
Q 007573 341 VCNAVITMYSRCGGILDSELAFRQIHSPNLVSWNTIIAAFAQHGHYEKALIFFSQMGLNGFDPDGITFLSLLSACGHAGK 420 (597)
Q Consensus 341 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~ 420 (597)
.+.-.++.-.+.|.+.+|..++.--.+.-...|.+....+...+.+++|.-.|+..-+ ....+.++..+|+
T Consensus 910 ~~~e~~n~I~kh~Ly~~aL~ly~~~~e~~k~i~~~ya~hL~~~~~~~~Aal~Ye~~Gk---------lekAl~a~~~~~d 980 (1265)
T KOG1920|consen 910 YFPECKNYIKKHGLYDEALALYKPDSEKQKVIYEAYADHLREELMSDEAALMYERCGK---------LEKALKAYKECGD 980 (1265)
T ss_pred ccHHHHHHHHhcccchhhhheeccCHHHHHHHHHHHHHHHHHhccccHHHHHHHHhcc---------HHHHHHHHHHhcc
Confidence 3444445555566666666555332222233444444445556667777666654321 2234566777778
Q ss_pred HHHHHHHHHHhHHhcCCCCC--hHHHHHHHHHHhhcCCHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 007573 421 VNESMDLFELMVKVYGIIPS--SEHYTCLVDILSRAGQLEKAWQITQGMPFEADTGVWGSLLAACVINLNVELGELAAKK 498 (597)
Q Consensus 421 ~~~a~~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~ 498 (597)
+++|..+..++.. .-+ ..+-..|+.-+...+++-+|-++..+....|... +..+++...+++|.++...
T Consensus 981 Wr~~l~~a~ql~~----~~de~~~~a~~L~s~L~e~~kh~eAa~il~e~~sd~~~a-----v~ll~ka~~~~eAlrva~~ 1051 (1265)
T KOG1920|consen 981 WREALSLAAQLSE----GKDELVILAEELVSRLVEQRKHYEAAKILLEYLSDPEEA-----VALLCKAKEWEEALRVASK 1051 (1265)
T ss_pred HHHHHHHHHhhcC----CHHHHHHHHHHHHHHHHHcccchhHHHHHHHHhcCHHHH-----HHHHhhHhHHHHHHHHHHh
Confidence 8887777665532 112 2223566777777888888877776655333221 1223344455556555544
Q ss_pred H
Q 007573 499 M 499 (597)
Q Consensus 499 ~ 499 (597)
.
T Consensus 1052 ~ 1052 (1265)
T KOG1920|consen 1052 A 1052 (1265)
T ss_pred c
Confidence 4
No 293
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=91.27 E-value=11 Score=34.17 Aligned_cols=69 Identities=17% Similarity=0.164 Sum_probs=44.8
Q ss_pred HHHHhcCCHHHHHHHHhhcCCC------ChhHHHHHHHHHHHcCChhHHHHHHHHhHHCCCCCCHHHHHHHHHHH
Q 007573 246 TGFCKVGMLENARLLFERIQPK------DCVSFNAMIAGYAQNGVAEEALRLFSGMIKMDMQPDDATLVSVFTAC 314 (597)
Q Consensus 246 ~~~~~~g~~~~A~~~~~~~~~~------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~ 314 (597)
..-.+.|++++|.+.|+.+... ...+--.++.++.+.+++++|+..+++..+.-..-...-|..-|.++
T Consensus 42 ~~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~YlkgL 116 (254)
T COG4105 42 LTELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAYYLKGL 116 (254)
T ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHHHHHHH
Confidence 3445678888888888887653 22355567777888888888888888877653333333444444443
No 294
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=91.06 E-value=9.5 Score=32.98 Aligned_cols=89 Identities=10% Similarity=0.027 Sum_probs=67.1
Q ss_pred HHHHHHcCCChHHHHHHHhhcCCCCCCch----HHHHHHHHHHhcCCHHHHHHHHhhcCCCChhH--HHHHHHHHHHcCC
Q 007573 211 MITGYVKNERFCEARELFYRMPDYDKNVF----VVTAMITGFCKVGMLENARLLFERIQPKDCVS--FNAMIAGYAQNGV 284 (597)
Q Consensus 211 ll~~~~~~g~~~~a~~~~~~~~~~~~~~~----~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~--~~~li~~~~~~g~ 284 (597)
+...+...+++++|+..++.......|.. +--.|.......|.+++|+..++....++-.. ...-.+.+...|+
T Consensus 95 lAk~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~~~w~~~~~elrGDill~kg~ 174 (207)
T COG2976 95 LAKAEVEANNLDKAEAQLKQALAQTKDENLKALAALRLARVQLQQKKADAALKTLDTIKEESWAAIVAELRGDILLAKGD 174 (207)
T ss_pred HHHHHHhhccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccccHHHHHHHHhhhHHHHcCc
Confidence 34567788999999999988776444332 23345677788899999999999888875443 4455677899999
Q ss_pred hhHHHHHHHHhHHCC
Q 007573 285 AEEALRLFSGMIKMD 299 (597)
Q Consensus 285 ~~~A~~~~~~m~~~g 299 (597)
-++|..-|.+.++.+
T Consensus 175 k~~Ar~ay~kAl~~~ 189 (207)
T COG2976 175 KQEARAAYEKALESD 189 (207)
T ss_pred hHHHHHHHHHHHHcc
Confidence 999999999988875
No 295
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=90.92 E-value=5.1 Score=33.98 Aligned_cols=33 Identities=6% Similarity=0.123 Sum_probs=16.2
Q ss_pred HHHHHHHHCCCCCChHHHHHHHHHHhccCcHHH
Q 007573 391 IFFSQMGLNGFDPDGITFLSLLSACGHAGKVNE 423 (597)
Q Consensus 391 ~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~ 423 (597)
++++-+.+.+++|+...+..++..+.+.|....
T Consensus 15 EYirSl~~~~i~~~~~L~~lli~lLi~~~~~~~ 47 (167)
T PF07035_consen 15 EYIRSLNQHNIPVQHELYELLIDLLIRNGQFSQ 47 (167)
T ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHH
Confidence 344444444555555555555555555554433
No 296
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=90.66 E-value=15 Score=34.59 Aligned_cols=18 Identities=6% Similarity=-0.346 Sum_probs=13.3
Q ss_pred HHhcCCHHHHHHHHHHHH
Q 007573 483 CVINLNVELGELAAKKMR 500 (597)
Q Consensus 483 ~~~~g~~~~a~~~~~~~~ 500 (597)
+.+.++++.|.+.|+-++
T Consensus 256 ~~~~k~y~~A~~w~~~al 273 (278)
T PF08631_consen 256 HYKAKNYDEAIEWYELAL 273 (278)
T ss_pred HHhhcCHHHHHHHHHHHH
Confidence 557788888888887654
No 297
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=90.54 E-value=7.7 Score=33.55 Aligned_cols=95 Identities=14% Similarity=0.083 Sum_probs=48.3
Q ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCChH--HHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChH------H
Q 007573 372 SWNTIIAAFAQHGHYEKALIFFSQMGLNGFDPDGI--TFLSLLSACGHAGKVNESMDLFELMVKVYGIIPSSE------H 443 (597)
Q Consensus 372 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~--~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~------~ 443 (597)
.+..+...|++.|+.++|++.|.++.+....|... .+..++......+++..+.....++.....-..|.. .
T Consensus 38 ~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrlk~ 117 (177)
T PF10602_consen 38 ALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRLKV 117 (177)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHHHH
Confidence 34455556666666666666666666544344322 344555555556666666655555543211111111 1
Q ss_pred HHHHHHHHhhcCCHHHHHHHHhhCC
Q 007573 444 YTCLVDILSRAGQLEKAWQITQGMP 468 (597)
Q Consensus 444 ~~~l~~~~~~~g~~~~A~~~~~~~~ 468 (597)
|..|. +...|++.+|-+.|-...
T Consensus 118 ~~gL~--~l~~r~f~~AA~~fl~~~ 140 (177)
T PF10602_consen 118 YEGLA--NLAQRDFKEAAELFLDSL 140 (177)
T ss_pred HHHHH--HHHhchHHHHHHHHHccC
Confidence 22221 234667777777765554
No 298
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=90.38 E-value=2.3 Score=34.87 Aligned_cols=78 Identities=13% Similarity=0.124 Sum_probs=49.7
Q ss_pred HHHHHHHHHH---hccCcHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHhhCCCCC-CHHHHHHHHH
Q 007573 406 ITFLSLLSAC---GHAGKVNESMDLFELMVKVYGIIPSSEHYTCLVDILSRAGQLEKAWQITQGMPFEA-DTGVWGSLLA 481 (597)
Q Consensus 406 ~~~~~ll~~~---~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p-~~~~~~~l~~ 481 (597)
...+.|+... ...++++++..+++.+.--..-.+...++. ...+...|++++|..+++++...+ ....-..|+.
T Consensus 8 ~iv~gLi~~~~~aL~~~d~~D~e~lLdALrvLrP~~~e~d~~d--g~l~i~rg~w~eA~rvlr~l~~~~~~~p~~kAL~A 85 (153)
T TIGR02561 8 RLLGGLIEVLMYALRSADPYDAQAMLDALRVLRPNLKELDMFD--GWLLIARGNYDEAARILRELLSSAGAPPYGKALLA 85 (153)
T ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCccccchhH--HHHHHHcCCHHHHHHHHHhhhccCCCchHHHHHHH
Confidence 3444454433 457899999999998874322223344443 455789999999999999998433 4344445555
Q ss_pred HHHh
Q 007573 482 ACVI 485 (597)
Q Consensus 482 ~~~~ 485 (597)
.|..
T Consensus 86 ~CL~ 89 (153)
T TIGR02561 86 LCLN 89 (153)
T ss_pred HHHH
Confidence 5543
No 299
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=90.22 E-value=9.2 Score=34.74 Aligned_cols=170 Identities=11% Similarity=0.124 Sum_probs=99.4
Q ss_pred cCCChHHHHHHHccCCC--C-----CchhHHHHHHHHHhCCChhHHHHHHHhcc-------c--CCcchHHHHHHHHHcC
Q 007573 155 KHGRLEEATRLFEQMPR--R-----NVISYTAMLDGFMKKGEVDKARALSDYMS-------F--KNVVSWTVMITGYVKN 218 (597)
Q Consensus 155 ~~g~~~~A~~~~~~~~~--~-----~~~~~~~li~~~~~~g~~~~A~~~~~~m~-------~--~~~~~~~~ll~~~~~~ 218 (597)
+..++++|+.-|++..+ + .-.+.-.+|..+.+.|++++....|.++. . -+..+.|+++......
T Consensus 39 ~e~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNySEKsIN~IlDyiStS 118 (440)
T KOG1464|consen 39 KEDEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYSEKSINSILDYISTS 118 (440)
T ss_pred cccCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHhhh
Confidence 34567788877776653 1 12345567888888888888888887771 1 2345566666666555
Q ss_pred CChHHHHHHHhhcCC---CCCCch----HHHHHHHHHHhcCCHHHHHHHHhhcCCC--------C-------hhHHHHHH
Q 007573 219 ERFCEARELFYRMPD---YDKNVF----VVTAMITGFCKVGMLENARLLFERIQPK--------D-------CVSFNAMI 276 (597)
Q Consensus 219 g~~~~a~~~~~~~~~---~~~~~~----~~~~l~~~~~~~g~~~~A~~~~~~~~~~--------~-------~~~~~~li 276 (597)
.+.+.-...|+.-.+ -..+.. +-.-|...|...|.+.+..++++++... | ...|..=|
T Consensus 119 ~~m~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQLLEiYAlEI 198 (440)
T KOG1464|consen 119 KNMDLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQLLEIYALEI 198 (440)
T ss_pred hhhHHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccchhhhhHhhHh
Confidence 555544444443322 111222 3345777777778887777777765421 1 13667777
Q ss_pred HHHHHcCChhHHHHHHHHhHHCCCCCCHHHHHHHHHHHh-----ccchhHHHH
Q 007573 277 AGYAQNGVAEEALRLFSGMIKMDMQPDDATLVSVFTACS-----ALQLLNEGR 324 (597)
Q Consensus 277 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~-----~~~~~~~a~ 324 (597)
..|..+.+-.+-..+|++.+...-.........+++-|. +.|.++.|.
T Consensus 199 QmYT~qKnNKkLK~lYeqalhiKSAIPHPlImGvIRECGGKMHlreg~fe~Ah 251 (440)
T KOG1464|consen 199 QMYTEQKNNKKLKALYEQALHIKSAIPHPLIMGVIRECGGKMHLREGEFEKAH 251 (440)
T ss_pred hhhhhhcccHHHHHHHHHHHHhhccCCchHHHhHHHHcCCccccccchHHHHH
Confidence 778877777777777777654322222233344555554 345555544
No 300
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=90.21 E-value=11 Score=32.51 Aligned_cols=90 Identities=12% Similarity=0.027 Sum_probs=56.7
Q ss_pred HHHHhccCcHHHHHHHHHHhHHhcCCCCChHHHH-----HHHHHHhhcCCHHHHHHHHhhCCCCCC--HHHHHHHHHHHH
Q 007573 412 LSACGHAGKVNESMDLFELMVKVYGIIPSSEHYT-----CLVDILSRAGQLEKAWQITQGMPFEAD--TGVWGSLLAACV 484 (597)
Q Consensus 412 l~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~-----~l~~~~~~~g~~~~A~~~~~~~~~~p~--~~~~~~l~~~~~ 484 (597)
...+...|++++|...++..... |..+.+. .|.......|.+++|++.++... .++ ......-+..+.
T Consensus 96 Ak~~ve~~~~d~A~aqL~~~l~~----t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~-~~~w~~~~~elrGDill 170 (207)
T COG2976 96 AKAEVEANNLDKAEAQLKQALAQ----TKDENLKALAALRLARVQLQQKKADAALKTLDTIK-EESWAAIVAELRGDILL 170 (207)
T ss_pred HHHHHhhccHHHHHHHHHHHHcc----chhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccc-cccHHHHHHHHhhhHHH
Confidence 34566777777777777765432 2222222 34566677788888888887765 222 222344455677
Q ss_pred hcCCHHHHHHHHHHHHhcCCCC
Q 007573 485 INLNVELGELAAKKMRELDPQN 506 (597)
Q Consensus 485 ~~g~~~~a~~~~~~~~~~~p~~ 506 (597)
..|+-++|+..|+++++.++.+
T Consensus 171 ~kg~k~~Ar~ay~kAl~~~~s~ 192 (207)
T COG2976 171 AKGDKQEARAAYEKALESDASP 192 (207)
T ss_pred HcCchHHHHHHHHHHHHccCCh
Confidence 8888888888888888776443
No 301
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=90.21 E-value=0.46 Score=27.60 Aligned_cols=30 Identities=13% Similarity=0.142 Sum_probs=25.5
Q ss_pred chHHHHHHHHHhcCCcHHHHHHHHHHHhCC
Q 007573 508 AVYVMLSNLYAAAGMWRDVTRVRLLMKEQG 537 (597)
Q Consensus 508 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 537 (597)
..+..++.++...|++++|++.+++..+..
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l~ 31 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKALELD 31 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHC
Confidence 467899999999999999999999987643
No 302
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=90.12 E-value=2.3 Score=39.38 Aligned_cols=74 Identities=12% Similarity=0.128 Sum_probs=50.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHhccC---CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHH-----CCCCCChHHHHHHH
Q 007573 341 VCNAVITMYSRCGGILDSELAFRQIH---SPNLVSWNTIIAAFAQHGHYEKALIFFSQMGL-----NGFDPDGITFLSLL 412 (597)
Q Consensus 341 ~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-----~g~~p~~~~~~~ll 412 (597)
++..++..+..+|+.+.+...++.+. +-+...|..++.+|.+.|+...|+..|+++.+ .|+.|...+.....
T Consensus 155 ~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~~y~ 234 (280)
T COG3629 155 ALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRALYE 234 (280)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHHHHH
Confidence 45566777777777777777777665 45566788888888888888888887777654 45666655544443
Q ss_pred HH
Q 007573 413 SA 414 (597)
Q Consensus 413 ~~ 414 (597)
..
T Consensus 235 ~~ 236 (280)
T COG3629 235 EI 236 (280)
T ss_pred HH
Confidence 33
No 303
>PRK10941 hypothetical protein; Provisional
Probab=90.04 E-value=3.5 Score=38.30 Aligned_cols=63 Identities=19% Similarity=0.115 Sum_probs=55.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCcHHHHHHHHHHHhCC
Q 007573 475 VWGSLLAACVINLNVELGELAAKKMRELDPQNSAVYVMLSNLYAAAGMWRDVTRVRLLMKEQG 537 (597)
Q Consensus 475 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 537 (597)
..+.|-.+|.+.++++.|.++.+.++.+.|+++.-+.--+-+|.+.|.+..|..-++...+.-
T Consensus 183 ml~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~ 245 (269)
T PRK10941 183 LLDTLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQC 245 (269)
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhC
Confidence 356666778999999999999999999999999888889999999999999999888877644
No 304
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=89.95 E-value=18 Score=34.33 Aligned_cols=135 Identities=12% Similarity=0.207 Sum_probs=75.1
Q ss_pred hhHHHHHHHHhHHCCCCCCHHHHHHHHHHHhc--c----chhHHHHHHHHHHHHhCCCCcccHHHHHHHHHHhcCCHHHH
Q 007573 285 AEEALRLFSGMIKMDMQPDDATLVSVFTACSA--L----QLLNEGRQSHVLVIRNGFEANVSVCNAVITMYSRCGGILDS 358 (597)
Q Consensus 285 ~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~--~----~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 358 (597)
+++.+.+++.|.+.|++-+..+|.+....... . .....+..+++.|.+...-.+
T Consensus 78 ~~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLT-------------------- 137 (297)
T PF13170_consen 78 FKEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLT-------------------- 137 (297)
T ss_pred HHHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCcccc--------------------
Confidence 34556788888888888888777664433322 1 234456666666666542110
Q ss_pred HHHHhccCCCChhhHHHHHHHHHHcCC----HHHHHHHHHHHHHCCCCCCh--HHHHHHHHHHhccCc--HHHHHHHHHH
Q 007573 359 ELAFRQIHSPNLVSWNTIIAAFAQHGH----YEKALIFFSQMGLNGFDPDG--ITFLSLLSACGHAGK--VNESMDLFEL 430 (597)
Q Consensus 359 ~~~~~~~~~~~~~~~~~li~~~~~~g~----~~~A~~~~~~m~~~g~~p~~--~~~~~ll~~~~~~g~--~~~a~~~~~~ 430 (597)
.++-.++..++.. ..++ .+.+..+|+.+.+.|+..+. .....++..+..... ...+.++++.
T Consensus 138 --------s~~D~~~a~lLA~--~~~~~e~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~ 207 (297)
T PF13170_consen 138 --------SPEDYPFAALLAM--TSEDVEELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNA 207 (297)
T ss_pred --------CccchhHHHHHhc--ccccHHHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHH
Confidence 1222233333222 1222 34566777777777766543 334444444333322 3467778888
Q ss_pred hHHhcCCCCChHHHHHHHHH
Q 007573 431 MVKVYGIIPSSEHYTCLVDI 450 (597)
Q Consensus 431 ~~~~~~~~p~~~~~~~l~~~ 450 (597)
+.+. ++++...+|..++-+
T Consensus 208 l~~~-~~kik~~~yp~lGlL 226 (297)
T PF13170_consen 208 LKKN-GVKIKYMHYPTLGLL 226 (297)
T ss_pred HHHc-CCccccccccHHHHH
Confidence 8776 888887777665433
No 305
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=89.80 E-value=16 Score=33.71 Aligned_cols=59 Identities=15% Similarity=-0.012 Sum_probs=52.3
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCcHHHHHHHHHHHh
Q 007573 477 GSLLAACVINLNVELGELAAKKMRELDPQNSAVYVMLSNLYAAAGMWRDVTRVRLLMKE 535 (597)
Q Consensus 477 ~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 535 (597)
+.....|...|.+.+|.++.++++.++|-+...+-.+...|...|+--+|.+-++++.+
T Consensus 283 gkva~~yle~g~~neAi~l~qr~ltldpL~e~~nk~lm~~la~~gD~is~~khyerya~ 341 (361)
T COG3947 283 GKVARAYLEAGKPNEAIQLHQRALTLDPLSEQDNKGLMASLATLGDEISAIKHYERYAE 341 (361)
T ss_pred HHHHHHHHHcCChHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhccchhhhhHHHHHHH
Confidence 33445688999999999999999999999999999999999999998888888888754
No 306
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=89.75 E-value=32 Score=36.89 Aligned_cols=176 Identities=10% Similarity=0.069 Sum_probs=110.9
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhhcCCCCh---hHHHHHHHHHHHcCChhHHHHHHHHhHHCCCCCCHHHHHHHHHHHhcc
Q 007573 241 VTAMITGFCKVGMLENARLLFERIQPKDC---VSFNAMIAGYAQNGVAEEALRLFSGMIKMDMQPDDATLVSVFTACSAL 317 (597)
Q Consensus 241 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~---~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~ 317 (597)
...-++.+.+...++-|..+-+.-..+.. ........-+.+.|++++|...|-+-... +.|. .++.-+-..
T Consensus 337 le~kL~iL~kK~ly~~Ai~LAk~~~~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~-le~s-----~Vi~kfLda 410 (933)
T KOG2114|consen 337 LETKLDILFKKNLYKVAINLAKSQHLDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGF-LEPS-----EVIKKFLDA 410 (933)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHccc-CChH-----HHHHHhcCH
Confidence 44567777778888888887766543211 13333445567789999998888765532 2333 234445556
Q ss_pred chhHHHHHHHHHHHHhCCCCcccHHHHHHHHHHhcCCHHHHHHHHhccCCCChh-hHHHHHHHHHHcCCHHHHHHHHHHH
Q 007573 318 QLLNEGRQSHVLVIRNGFEANVSVCNAVITMYSRCGGILDSELAFRQIHSPNLV-SWNTIIAAFAQHGHYEKALIFFSQM 396 (597)
Q Consensus 318 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~li~~~~~~g~~~~A~~~~~~m 396 (597)
........+++.+.+.|+. +...-..|+.+|.+.++.++-.+..+........ -....+..+.+.+-.++|..+-.+.
T Consensus 411 q~IknLt~YLe~L~~~gla-~~dhttlLLncYiKlkd~~kL~efI~~~~~g~~~fd~e~al~Ilr~snyl~~a~~LA~k~ 489 (933)
T KOG2114|consen 411 QRIKNLTSYLEALHKKGLA-NSDHTTLLLNCYIKLKDVEKLTEFISKCDKGEWFFDVETALEILRKSNYLDEAELLATKF 489 (933)
T ss_pred HHHHHHHHHHHHHHHcccc-cchhHHHHHHHHHHhcchHHHHHHHhcCCCcceeeeHHHHHHHHHHhChHHHHHHHHHHh
Confidence 6667777778888888854 4455677889999999999888888776621111 2445566666677777776665544
Q ss_pred HHCCCCCChHHHHHHHHHHhccCcHHHHHHHHHHh
Q 007573 397 GLNGFDPDGITFLSLLSACGHAGKVNESMDLFELM 431 (597)
Q Consensus 397 ~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~ 431 (597)
.. +......+ +...+++++|.+++..+
T Consensus 490 ~~-----he~vl~il---le~~~ny~eAl~yi~sl 516 (933)
T KOG2114|consen 490 KK-----HEWVLDIL---LEDLHNYEEALRYISSL 516 (933)
T ss_pred cc-----CHHHHHHH---HHHhcCHHHHHHHHhcC
Confidence 32 22333333 34567788888877644
No 307
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=89.75 E-value=32 Score=36.89 Aligned_cols=176 Identities=15% Similarity=0.129 Sum_probs=107.3
Q ss_pred hHHHHHHHHHhCCChhHHHHHHhhCCCCC---cchHHHHHHHHHcCCChHHHHHHHccCCCCChhhHHHHHHHHHcCCCh
Q 007573 83 TWNAIITGYWQNGFLQESKNLFQSMPVKN---IVSWNCMIAGCIDNDRIDDAFDYFQAMPERNTATYNAMISGFLKHGRL 159 (597)
Q Consensus 83 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 159 (597)
+...-|..+.+...++-|+.+-+.-..+. ....-...+-+.+.|++++|...+-+...--..+ .++.-|....+.
T Consensus 336 ~le~kL~iL~kK~ly~~Ai~LAk~~~~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~le~s--~Vi~kfLdaq~I 413 (933)
T KOG2114|consen 336 DLETKLDILFKKNLYKVAINLAKSQHLDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGFLEPS--EVIKKFLDAQRI 413 (933)
T ss_pred cHHHHHHHHHHhhhHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHcccCChH--HHHHHhcCHHHH
Confidence 35566777888888888888876654331 1223333344567899999987776655211111 133444444444
Q ss_pred HHHHHHHccCCC---CCchhHHHHHHHHHhCCChhHHHHHHHhcccCCc--chHHHHHHHHHcCCChHHHHHHHhhcCCC
Q 007573 160 EEATRLFEQMPR---RNVISYTAMLDGFMKKGEVDKARALSDYMSFKNV--VSWTVMITGYVKNERFCEARELFYRMPDY 234 (597)
Q Consensus 160 ~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~--~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 234 (597)
.+-...++.+.+ .+...-+.|+.+|.+.++.++-.++.+... ... .-....+..+.+.+-.++|.-+-.....
T Consensus 414 knLt~YLe~L~~~gla~~dhttlLLncYiKlkd~~kL~efI~~~~-~g~~~fd~e~al~Ilr~snyl~~a~~LA~k~~~- 491 (933)
T KOG2114|consen 414 KNLTSYLEALHKKGLANSDHTTLLLNCYIKLKDVEKLTEFISKCD-KGEWFFDVETALEILRKSNYLDEAELLATKFKK- 491 (933)
T ss_pred HHHHHHHHHHHHcccccchhHHHHHHHHHHhcchHHHHHHHhcCC-CcceeeeHHHHHHHHHHhChHHHHHHHHHHhcc-
Confidence 444445555443 344556778899999999988888776664 222 2245666777777777777766554432
Q ss_pred CCCchHHHHHHHHHHhcCCHHHHHHHHhhcCCC
Q 007573 235 DKNVFVVTAMITGFCKVGMLENARLLFERIQPK 267 (597)
Q Consensus 235 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 267 (597)
...+... .+-..+++++|++.+..++.+
T Consensus 492 --he~vl~i---lle~~~ny~eAl~yi~slp~~ 519 (933)
T KOG2114|consen 492 --HEWVLDI---LLEDLHNYEEALRYISSLPIS 519 (933)
T ss_pred --CHHHHHH---HHHHhcCHHHHHHHHhcCCHH
Confidence 2233333 334567899999999888764
No 308
>TIGR02270 conserved hypothetical protein. Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.
Probab=89.67 E-value=24 Score=35.31 Aligned_cols=128 Identities=9% Similarity=-0.020 Sum_probs=54.9
Q ss_pred HHHHHccCCCCChhhHHHHHHHHHcCCChHHHHHHHccCCCCCchhHHHHHHHHHhCCChhHHHHHHHhcccCCcchHHH
Q 007573 131 AFDYFQAMPERNTATYNAMISGFLKHGRLEEATRLFEQMPRRNVISYTAMLDGFMKKGEVDKARALSDYMSFKNVVSWTV 210 (597)
Q Consensus 131 A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~ 210 (597)
...+.+.+..++..+....+.++.+.+.......+..-...+++......+.++...+. +....+..-+..+|...-..
T Consensus 88 ~~~L~~~L~d~~~~vr~aaa~ALg~i~~~~a~~~L~~~L~~~~p~vR~aal~al~~r~~-~~~~~L~~~L~d~d~~Vra~ 166 (410)
T TIGR02270 88 LRSVLAVLQAGPEGLCAGIQAALGWLGGRQAEPWLEPLLAASEPPGRAIGLAALGAHRH-DPGPALEAALTHEDALVRAA 166 (410)
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHhcCCchHHHHHHHHHhcCCChHHHHHHHHHHHhhcc-ChHHHHHHHhcCCCHHHHHH
Confidence 33444444445555556666666666555555444444444454444444444443331 11112222223334444444
Q ss_pred HHHHHHcCCChHHHHHHHhhcCCCCCCchHHHHHHHHHHhcCCHHHHHHHHh
Q 007573 211 MITGYVKNERFCEARELFYRMPDYDKNVFVVTAMITGFCKVGMLENARLLFE 262 (597)
Q Consensus 211 ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 262 (597)
-+.++...+..+..-. +..+. ..++..+-..-+.+....|. ++|...+.
T Consensus 167 A~raLG~l~~~~a~~~-L~~al-~d~~~~VR~aA~~al~~lG~-~~A~~~l~ 215 (410)
T TIGR02270 167 ALRALGELPRRLSEST-LRLYL-RDSDPEVRFAALEAGLLAGS-RLAWGVCR 215 (410)
T ss_pred HHHHHHhhccccchHH-HHHHH-cCCCHHHHHHHHHHHHHcCC-HhHHHHHH
Confidence 4444444444322222 22221 12444444444555555555 44444433
No 309
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=89.56 E-value=2.4 Score=36.65 Aligned_cols=93 Identities=13% Similarity=0.028 Sum_probs=62.6
Q ss_pred hHHHHHHHHHHhhcCCHHHHHHHHhhCC---CCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC--CCCc----h
Q 007573 441 SEHYTCLVDILSRAGQLEKAWQITQGMP---FEAD--TGVWGSLLAACVINLNVELGELAAKKMRELDP--QNSA----V 509 (597)
Q Consensus 441 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~p~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p--~~~~----~ 509 (597)
...+..+++.|.+.|+.++|.+.+.++. ..|. ...+-.++..+...+++..+...+.++...-. .+.. .
T Consensus 36 r~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrl 115 (177)
T PF10602_consen 36 RMALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRL 115 (177)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHH
Confidence 3456677888888888888888888876 2222 34567777888888888888888888876422 2211 1
Q ss_pred HHHHHHHHHhcCCcHHHHHHHHHH
Q 007573 510 YVMLSNLYAAAGMWRDVTRVRLLM 533 (597)
Q Consensus 510 ~~~l~~~~~~~g~~~~A~~~~~~~ 533 (597)
-..-+-.+...+++.+|.+.|-..
T Consensus 116 k~~~gL~~l~~r~f~~AA~~fl~~ 139 (177)
T PF10602_consen 116 KVYEGLANLAQRDFKEAAELFLDS 139 (177)
T ss_pred HHHHHHHHHHhchHHHHHHHHHcc
Confidence 223344455678888888887654
No 310
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=89.38 E-value=0.97 Score=27.71 Aligned_cols=26 Identities=12% Similarity=-0.117 Sum_probs=12.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHH
Q 007573 475 VWGSLLAACVINLNVELGELAAKKMR 500 (597)
Q Consensus 475 ~~~~l~~~~~~~g~~~~a~~~~~~~~ 500 (597)
+++.|...|...|++++|+.++++++
T Consensus 4 ~~~~la~~~~~~g~~~~A~~~~~~al 29 (42)
T PF13374_consen 4 ALNNLANAYRAQGRYEEALELLEEAL 29 (42)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhcchhhHHHHHHH
Confidence 34444444444455555555444444
No 311
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=89.25 E-value=17 Score=33.10 Aligned_cols=237 Identities=14% Similarity=0.143 Sum_probs=126.5
Q ss_pred CCHHHHHHHHhhcCC----C---ChhHHHHHHHHHHHcCChhHHHHHHHHhHH---CCC--CCCHHHHHHHHHHHhccch
Q 007573 252 GMLENARLLFERIQP----K---DCVSFNAMIAGYAQNGVAEEALRLFSGMIK---MDM--QPDDATLVSVFTACSALQL 319 (597)
Q Consensus 252 g~~~~A~~~~~~~~~----~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~---~g~--~p~~~~~~~ll~~~~~~~~ 319 (597)
...++|+.-|+++.+ + .-.+.-.+|..+.+.+++++.+..|.+|+. ..+ .-+....++++...+...+
T Consensus 41 ~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNySEKsIN~IlDyiStS~~ 120 (440)
T KOG1464|consen 41 DEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYSEKSINSILDYISTSKN 120 (440)
T ss_pred cCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHhhhhh
Confidence 345556655555432 1 122444566666777777777766666643 111 1223344555554444444
Q ss_pred hHHHHHHHHHHHHh-----CCCCcccHHHHHHHHHHhcCCHHHHHHHHhccCC--------CC-------hhhHHHHHHH
Q 007573 320 LNEGRQSHVLVIRN-----GFEANVSVCNAVITMYSRCGGILDSELAFRQIHS--------PN-------LVSWNTIIAA 379 (597)
Q Consensus 320 ~~~a~~~~~~~~~~-----~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--------~~-------~~~~~~li~~ 379 (597)
.+.....++.-++. +-..--.+-..|...|...|.+.+..++++++.. .| ...|..-|..
T Consensus 121 m~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQLLEiYAlEIQm 200 (440)
T KOG1464|consen 121 MDLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQLLEIYALEIQM 200 (440)
T ss_pred hHHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccchhhhhHhhHhhh
Confidence 44444443332211 1111222334566777777888888777777651 11 2356667788
Q ss_pred HHHcCCHHHHHHHHHHHHHC-CCCCChHHHHHHHHHH-----hccCcHHHHHHHHHHhHHhcCCCCCh-----HHHHHHH
Q 007573 380 FAQHGHYEKALIFFSQMGLN-GFDPDGITFLSLLSAC-----GHAGKVNESMDLFELMVKVYGIIPSS-----EHYTCLV 448 (597)
Q Consensus 380 ~~~~g~~~~A~~~~~~m~~~-g~~p~~~~~~~ll~~~-----~~~g~~~~a~~~~~~~~~~~~~~p~~-----~~~~~l~ 448 (597)
|....+-.+-..++++...- ..-|.+.... +++-| .+.|.+++|..-|-++.+.+.-.-++ --|..|.
T Consensus 201 YT~qKnNKkLK~lYeqalhiKSAIPHPlImG-vIRECGGKMHlreg~fe~AhTDFFEAFKNYDEsGspRRttCLKYLVLA 279 (440)
T KOG1464|consen 201 YTEQKNNKKLKALYEQALHIKSAIPHPLIMG-VIRECGGKMHLREGEFEKAHTDFFEAFKNYDESGSPRRTTCLKYLVLA 279 (440)
T ss_pred hhhhcccHHHHHHHHHHHHhhccCCchHHHh-HHHHcCCccccccchHHHHHhHHHHHHhcccccCCcchhHHHHHHHHH
Confidence 88888877777788776542 2345554433 44444 45688888876555555544332222 2255566
Q ss_pred HHHhhcC----CHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 007573 449 DILSRAG----QLEKAWQITQGMPFEADTGVWGSLLAACVINLNVELGEL 494 (597)
Q Consensus 449 ~~~~~~g----~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~ 494 (597)
+++.+.| +..+|.-+ ...|.......|+.+|... +..+-++
T Consensus 280 NMLmkS~iNPFDsQEAKPy----KNdPEIlAMTnlv~aYQ~N-dI~eFE~ 324 (440)
T KOG1464|consen 280 NMLMKSGINPFDSQEAKPY----KNDPEILAMTNLVAAYQNN-DIIEFER 324 (440)
T ss_pred HHHHHcCCCCCcccccCCC----CCCHHHHHHHHHHHHHhcc-cHHHHHH
Confidence 6776665 22222110 1345566778888888654 4333333
No 312
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=89.20 E-value=0.62 Score=27.12 Aligned_cols=30 Identities=20% Similarity=0.205 Sum_probs=25.8
Q ss_pred chHHHHHHHHHhcCCcHHHHHHHHHHHhCC
Q 007573 508 AVYVMLSNLYAAAGMWRDVTRVRLLMKEQG 537 (597)
Q Consensus 508 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 537 (597)
.+|..++.+|...|++++|+..+++..+..
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~ 31 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALELD 31 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHC
Confidence 468899999999999999999999988754
No 313
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=89.16 E-value=1.2 Score=41.56 Aligned_cols=94 Identities=13% Similarity=0.081 Sum_probs=61.6
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHCCCCC-ChHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcC
Q 007573 377 IAAFAQHGHYEKALIFFSQMGLNGFDP-DGITFLSLLSACGHAGKVNESMDLFELMVKVYGIIPSSEHYTCLVDILSRAG 455 (597)
Q Consensus 377 i~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g 455 (597)
..-|.++|.+++|++.|.+.... .| |++++..-..+|.+...+..|..-...+.... ..-...|..-+.+-...|
T Consensus 104 GN~yFKQgKy~EAIDCYs~~ia~--~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd--~~Y~KAYSRR~~AR~~Lg 179 (536)
T KOG4648|consen 104 GNTYFKQGKYEEAIDCYSTAIAV--YPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALD--KLYVKAYSRRMQARESLG 179 (536)
T ss_pred hhhhhhccchhHHHHHhhhhhcc--CCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhh--HHHHHHHHHHHHHHHHHh
Confidence 35688999999999999887754 56 88899888899999888887776665554320 001223333333334456
Q ss_pred CHHHHHHHHhhCC-CCCCHH
Q 007573 456 QLEKAWQITQGMP-FEADTG 474 (597)
Q Consensus 456 ~~~~A~~~~~~~~-~~p~~~ 474 (597)
...+|.+-++... .+|+..
T Consensus 180 ~~~EAKkD~E~vL~LEP~~~ 199 (536)
T KOG4648|consen 180 NNMEAKKDCETVLALEPKNI 199 (536)
T ss_pred hHHHHHHhHHHHHhhCcccH
Confidence 6666666665544 667643
No 314
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=89.12 E-value=13 Score=31.51 Aligned_cols=127 Identities=13% Similarity=0.083 Sum_probs=75.2
Q ss_pred hHHHHHHHHHhCCChhHHHHHHHhcccCCcchHHHHH-----HHHHcCCChHHHHHHHhhcCCCCCCchHHHHH-----H
Q 007573 176 SYTAMLDGFMKKGEVDKARALSDYMSFKNVVSWTVMI-----TGYVKNERFCEARELFYRMPDYDKNVFVVTAM-----I 245 (597)
Q Consensus 176 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~ll-----~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~l-----~ 245 (597)
.|..-++ +.+.+..++|+.-|..+.+.+.-.|-.|. ....+.|+-..|...|+++-...+-+....-+ .
T Consensus 61 ~flaAL~-lA~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlraa 139 (221)
T COG4649 61 AFLAALK-LAQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRAA 139 (221)
T ss_pred HHHHHHH-HHHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHHHH
Confidence 3444333 34556667777777777665555544433 23456777777777777776644433333222 2
Q ss_pred HHHHhcCCHHHHHHHHhhcCCC-Ch---hHHHHHHHHHHHcCChhHHHHHHHHhHHCCCCCC
Q 007573 246 TGFCKVGMLENARLLFERIQPK-DC---VSFNAMIAGYAQNGVAEEALRLFSGMIKMDMQPD 303 (597)
Q Consensus 246 ~~~~~~g~~~~A~~~~~~~~~~-~~---~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~ 303 (597)
-.+...|.+++...-.+.+..+ ++ ..-..|.-+-.+.|++.+|.+.|.++......|.
T Consensus 140 ~lLvD~gsy~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~Da~apr 201 (221)
T COG4649 140 YLLVDNGSYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIANDAQAPR 201 (221)
T ss_pred HHHhccccHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHccccCcH
Confidence 2345677777776666655432 22 3445666677778888888888887776544443
No 315
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=89.05 E-value=0.9 Score=26.05 Aligned_cols=25 Identities=12% Similarity=0.121 Sum_probs=11.6
Q ss_pred HHHHHHHHhcCCcHHHHHHHHHHHh
Q 007573 511 VMLSNLYAAAGMWRDVTRVRLLMKE 535 (597)
Q Consensus 511 ~~l~~~~~~~g~~~~A~~~~~~~~~ 535 (597)
..++.++.+.|++++|.+.++++.+
T Consensus 4 ~~~a~~~~~~g~~~~A~~~~~~~~~ 28 (33)
T PF13174_consen 4 YRLARCYYKLGDYDEAIEYFQRLIK 28 (33)
T ss_dssp HHHHHHHHHHCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHH
Confidence 3444444444444444444444443
No 316
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=89.04 E-value=7.1 Score=38.49 Aligned_cols=88 Identities=13% Similarity=0.019 Sum_probs=51.7
Q ss_pred HHhhcCCHHHHHHHHhhCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCcHHHH
Q 007573 450 ILSRAGQLEKAWQITQGMP--FEADTGVWGSLLAACVINLNVELGELAAKKMRELDPQNSAVYVMLSNLYAAAGMWRDVT 527 (597)
Q Consensus 450 ~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~ 527 (597)
.....|+++.+...+.... +.....+...++......|++++|....+.++..+.+++.+....+-.-...|-+|++.
T Consensus 332 i~~~lg~ye~~~~~~s~~~~~~~s~~~~~~~~~r~~~~l~r~~~a~s~a~~~l~~eie~~ei~~iaa~sa~~l~~~d~~~ 411 (831)
T PRK15180 332 IFSHLGYYEQAYQDISDVEKIIGTTDSTLRCRLRSLHGLARWREALSTAEMMLSNEIEDEEVLTVAAGSADALQLFDKSY 411 (831)
T ss_pred HHHHhhhHHHHHHHhhchhhhhcCCchHHHHHHHhhhchhhHHHHHHHHHHHhccccCChhheeeecccHHHHhHHHHHH
Confidence 3445566666666655443 23344455666666666667777777776666665555554444444445556667777
Q ss_pred HHHHHHHhCC
Q 007573 528 RVRLLMKEQG 537 (597)
Q Consensus 528 ~~~~~~~~~~ 537 (597)
-.|+++....
T Consensus 412 ~~wk~~~~~~ 421 (831)
T PRK15180 412 HYWKRVLLLN 421 (831)
T ss_pred HHHHHHhccC
Confidence 7777665433
No 317
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=88.61 E-value=0.66 Score=25.19 Aligned_cols=24 Identities=17% Similarity=0.101 Sum_probs=17.5
Q ss_pred chHHHHHHHHHhcCCcHHHHHHHH
Q 007573 508 AVYVMLSNLYAAAGMWRDVTRVRL 531 (597)
Q Consensus 508 ~~~~~l~~~~~~~g~~~~A~~~~~ 531 (597)
.....++.++...|++++|..+++
T Consensus 2 ~a~~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 2 RARLALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHh
Confidence 345677778888888888877765
No 318
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=88.33 E-value=7 Score=31.44 Aligned_cols=71 Identities=14% Similarity=0.002 Sum_probs=43.2
Q ss_pred CCChHHHHHHHHHHhhcCCHHH---HHHHHhhCC--CCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCc
Q 007573 438 IPSSEHYTCLVDILSRAGQLEK---AWQITQGMP--FEAD--TGVWGSLLAACVINLNVELGELAAKKMRELDPQNSA 508 (597)
Q Consensus 438 ~p~~~~~~~l~~~~~~~g~~~~---A~~~~~~~~--~~p~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~ 508 (597)
.++..+--.+..++.+..+.++ -..+++.+. ..|+ .....-|.-++.+.|+++.+.++.+..++.+|+|..
T Consensus 29 ~~s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e~~n~Q 106 (149)
T KOG3364|consen 29 DVSKQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLETEPNNRQ 106 (149)
T ss_pred cchHHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhhCCCcHH
Confidence 4556666667777777665443 444555543 2232 223344455577777888888888888777777654
No 319
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=88.06 E-value=1 Score=27.65 Aligned_cols=29 Identities=21% Similarity=0.210 Sum_probs=24.9
Q ss_pred chHHHHHHHHHhcCCcHHHHHHHHHHHhC
Q 007573 508 AVYVMLSNLYAAAGMWRDVTRVRLLMKEQ 536 (597)
Q Consensus 508 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 536 (597)
.++..++.+|...|++++|.+++++..+.
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~~ 31 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALEI 31 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHHH
Confidence 46789999999999999999999998763
No 320
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=88.01 E-value=1.2 Score=37.69 Aligned_cols=33 Identities=15% Similarity=0.228 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcC
Q 007573 489 VELGELAAKKMRELDPQNSAVYVMLSNLYAAAG 521 (597)
Q Consensus 489 ~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 521 (597)
+++|+.-|++++.++|+...++..++++|...+
T Consensus 51 iedAisK~eeAL~I~P~~hdAlw~lGnA~ts~A 83 (186)
T PF06552_consen 51 IEDAISKFEEALKINPNKHDALWCLGNAYTSLA 83 (186)
T ss_dssp HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHH
Confidence 455666677777778877777777777777655
No 321
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=88.00 E-value=0.76 Score=26.39 Aligned_cols=31 Identities=6% Similarity=-0.122 Sum_probs=26.7
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC
Q 007573 476 WGSLLAACVINLNVELGELAAKKMRELDPQN 506 (597)
Q Consensus 476 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~ 506 (597)
+-.++.++...|+.++|...++++++..|++
T Consensus 3 ~~~~a~~~~~~g~~~~A~~~~~~~~~~~P~s 33 (33)
T PF13174_consen 3 LYRLARCYYKLGDYDEAIEYFQRLIKRYPDS 33 (33)
T ss_dssp HHHHHHHHHHHCHHHHHHHHHHHHHHHSTTS
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHHCcCC
Confidence 4456778889999999999999999999874
No 322
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=87.93 E-value=52 Score=37.11 Aligned_cols=180 Identities=13% Similarity=0.061 Sum_probs=88.4
Q ss_pred HHHccCCCCChhhHHHHHHHHHcCCChHHHHHHHccCCCCCchhHHHHHHHHHhCCCh-hHHHHHHHhcccCCcchHHHH
Q 007573 133 DYFQAMPERNTATYNAMISGFLKHGRLEEATRLFEQMPRRNVISYTAMLDGFMKKGEV-DKARALSDYMSFKNVVSWTVM 211 (597)
Q Consensus 133 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~-~~A~~~~~~m~~~~~~~~~~l 211 (597)
.+.+.+..+|+.+-...+..+.+.+..+....+...+..+|...-...+.++.+.+.. .....+...+..+|...-...
T Consensus 625 ~L~~~L~D~d~~VR~~Av~~L~~~~~~~~~~~L~~aL~D~d~~VR~~Aa~aL~~l~~~~~~~~~L~~~L~~~d~~VR~~A 704 (897)
T PRK13800 625 ELAPYLADPDPGVRRTAVAVLTETTPPGFGPALVAALGDGAAAVRRAAAEGLRELVEVLPPAPALRDHLGSPDPVVRAAA 704 (897)
T ss_pred HHHHHhcCCCHHHHHHHHHHHhhhcchhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhccCchHHHHHHhcCCCHHHHHHH
Confidence 3444444666666666666666666544333344444445554444444444443221 111222233334555555555
Q ss_pred HHHHHcCCChHHHHHHHhhcCCCCCCchHHHHHHHHHHhcCCHHHHHHHHhhcCCCChhHHHHHHHHHHHcCChhH-HHH
Q 007573 212 ITGYVKNERFCEARELFYRMPDYDKNVFVVTAMITGFCKVGMLENARLLFERIQPKDCVSFNAMIAGYAQNGVAEE-ALR 290 (597)
Q Consensus 212 l~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~-A~~ 290 (597)
+.++...+..+ ...+...+.. ++..+....+.++.+.+..+. +...+..++...-...+.++...+..+. +..
T Consensus 705 ~~aL~~~~~~~-~~~l~~~L~D--~d~~VR~~Av~aL~~~~~~~~---l~~~l~D~~~~VR~~aa~aL~~~~~~~~~~~~ 778 (897)
T PRK13800 705 LDVLRALRAGD-AALFAAALGD--PDHRVRIEAVRALVSVDDVES---VAGAATDENREVRIAVAKGLATLGAGGAPAGD 778 (897)
T ss_pred HHHHHhhccCC-HHHHHHHhcC--CCHHHHHHHHHHHhcccCcHH---HHHHhcCCCHHHHHHHHHHHHHhccccchhHH
Confidence 55555433211 1223333333 566666666666666554432 3334455666666666666666665432 344
Q ss_pred HHHHhHHCCCCCCHHHHHHHHHHHhccchhH
Q 007573 291 LFSGMIKMDMQPDDATLVSVFTACSALQLLN 321 (597)
Q Consensus 291 ~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~ 321 (597)
.+..+.+ .+|...-...+.++...+..+
T Consensus 779 ~L~~ll~---D~d~~VR~aA~~aLg~~g~~~ 806 (897)
T PRK13800 779 AVRALTG---DPDPLVRAAALAALAELGCPP 806 (897)
T ss_pred HHHHHhc---CCCHHHHHHHHHHHHhcCCcc
Confidence 4555543 344444455555555555443
No 323
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=87.72 E-value=3.6 Score=27.10 Aligned_cols=49 Identities=10% Similarity=-0.041 Sum_probs=37.7
Q ss_pred HHHHHHHHHhcCCcHHHHHHHHHHHhCCCccCCCeeEEEECCEEEEEEeCCCCCcchHHHHHHHHHHHHHHhhcC
Q 007573 510 YVMLSNLYAAAGMWRDVTRVRLLMKEQGVTKQCAYSWIEIGNKVHYFLGGDMSHPCIDKIHLELKRASVQMKSVD 584 (597)
Q Consensus 510 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~ 584 (597)
+..++-++.+.|++++|.+..+.+.+. +|...++...-+.+..++++.|
T Consensus 4 lY~lAig~ykl~~Y~~A~~~~~~lL~~--------------------------eP~N~Qa~~L~~~i~~~i~kdg 52 (53)
T PF14853_consen 4 LYYLAIGHYKLGEYEKARRYCDALLEI--------------------------EPDNRQAQSLKELIEDKIQKDG 52 (53)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHH--------------------------TTS-HHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHhh--------------------------CCCcHHHHHHHHHHHHHHhccC
Confidence 456788899999999999999998873 6777777777777777777654
No 324
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=87.65 E-value=7.5 Score=33.66 Aligned_cols=101 Identities=15% Similarity=0.055 Sum_probs=56.5
Q ss_pred hccCcHHHHHHHHHHhHHhcCCCCC---hHHHHHHHHHHhhcCCHHHHHHHHhhCC-CCCC-HHHHHHHHHHHHhcCCHH
Q 007573 416 GHAGKVNESMDLFELMVKVYGIIPS---SEHYTCLVDILSRAGQLEKAWQITQGMP-FEAD-TGVWGSLLAACVINLNVE 490 (597)
Q Consensus 416 ~~~g~~~~a~~~~~~~~~~~~~~p~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p~-~~~~~~l~~~~~~~g~~~ 490 (597)
...|++++|..-|..+.....-.+. ...|..-..++.+.+.++.|.+-..+.. +.|. ...+..-..+|.+...++
T Consensus 106 F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kAl~RRAeayek~ek~e 185 (271)
T KOG4234|consen 106 FKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEKALERRAEAYEKMEKYE 185 (271)
T ss_pred hhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHHHHHHHHHHHhhhhHH
Confidence 3455555555555555442111111 2233334455566677777766555443 4443 223333445677777888
Q ss_pred HHHHHHHHHHhcCCCCCchHHHHHHH
Q 007573 491 LGELAAKKMRELDPQNSAVYVMLSNL 516 (597)
Q Consensus 491 ~a~~~~~~~~~~~p~~~~~~~~l~~~ 516 (597)
.|+.-|+++++.+|....+....+.+
T Consensus 186 ealeDyKki~E~dPs~~ear~~i~rl 211 (271)
T KOG4234|consen 186 EALEDYKKILESDPSRREAREAIARL 211 (271)
T ss_pred HHHHHHHHHHHhCcchHHHHHHHHhc
Confidence 99999999999988865544444433
No 325
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=87.00 E-value=6.7 Score=36.50 Aligned_cols=101 Identities=18% Similarity=0.196 Sum_probs=71.9
Q ss_pred hCCCCcccHHHHHHHHHHhcCCHHHHHHHHhccC-CCChh-----hHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCChH
Q 007573 333 NGFEANVSVCNAVITMYSRCGGILDSELAFRQIH-SPNLV-----SWNTIIAAFAQHGHYEKALIFFSQMGLNGFDPDGI 406 (597)
Q Consensus 333 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~~-----~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ 406 (597)
.|.+....+...++..-....++++++..+-++. .|+.. +-...+..+. .=++++++.++..=++-|+-||..
T Consensus 58 ~g~~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~~~~~irlll-ky~pq~~i~~l~npIqYGiF~dqf 136 (418)
T KOG4570|consen 58 RGLPVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWTIHTWIRLLL-KYDPQKAIYTLVNPIQYGIFPDQF 136 (418)
T ss_pred cCCCcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccccHHHHHHHHH-ccChHHHHHHHhCcchhccccchh
Confidence 3555566666666766666778888888777665 22211 1112223222 346779999998888999999999
Q ss_pred HHHHHHHHHhccCcHHHHHHHHHHhHHh
Q 007573 407 TFLSLLSACGHAGKVNESMDLFELMVKV 434 (597)
Q Consensus 407 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 434 (597)
++..++..+.+.+++.+|.++.-.|...
T Consensus 137 ~~c~l~D~flk~~n~~~aa~vvt~~~~q 164 (418)
T KOG4570|consen 137 TFCLLMDSFLKKENYKDAASVVTEVMMQ 164 (418)
T ss_pred hHHHHHHHHHhcccHHHHHHHHHHHHHH
Confidence 9999999999999999988887776654
No 326
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=86.87 E-value=50 Score=35.79 Aligned_cols=185 Identities=15% Similarity=0.140 Sum_probs=87.4
Q ss_pred HhcCCHHHHHHHHhccC----CCCh-------hhHHHHHH-HHHHcCCHHHHHHHHHHHHHC----CCCCChHHHHHHHH
Q 007573 350 SRCGGILDSELAFRQIH----SPNL-------VSWNTIIA-AFAQHGHYEKALIFFSQMGLN----GFDPDGITFLSLLS 413 (597)
Q Consensus 350 ~~~g~~~~A~~~~~~~~----~~~~-------~~~~~li~-~~~~~g~~~~A~~~~~~m~~~----g~~p~~~~~~~ll~ 413 (597)
....++.+|..++.++. .|+. ..|+.+-. .....|++++|.++.+..... -..+....+..+..
T Consensus 426 ~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~~~ 505 (894)
T COG2909 426 ASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVALSVLGE 505 (894)
T ss_pred HHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhhhhhhH
Confidence 33456666666655443 2211 13444322 223467777777777666543 12223444555556
Q ss_pred HHhccCcHHHHHHHHHHhHHhcCCCCChHHHHHH-----HHHHhhcCCH--HHHHHHHhhCC-----CCCC----HHHHH
Q 007573 414 ACGHAGKVNESMDLFELMVKVYGIIPSSEHYTCL-----VDILSRAGQL--EKAWQITQGMP-----FEAD----TGVWG 477 (597)
Q Consensus 414 ~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l-----~~~~~~~g~~--~~A~~~~~~~~-----~~p~----~~~~~ 477 (597)
+..-.|++++|..+.....+. .-.-+...+... ...+...|.. ++.+..+.... .+|- ..+..
T Consensus 506 a~~~~G~~~~Al~~~~~a~~~-a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~~~~f~~~~r~ 584 (894)
T COG2909 506 AAHIRGELTQALALMQQAEQM-ARQHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQKPRHEFLVRIRA 584 (894)
T ss_pred HHHHhchHHHHHHHHHHHHHH-HHHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHH
Confidence 666677777777666555443 112232222222 2234455522 22222232221 1221 22334
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhc----CCCCC---chHHHHHHHHHhcCCcHHHHHHHHHHHhCCC
Q 007573 478 SLLAACVINLNVELGELAAKKMREL----DPQNS---AVYVMLSNLYAAAGMWRDVTRVRLLMKEQGV 538 (597)
Q Consensus 478 ~l~~~~~~~g~~~~a~~~~~~~~~~----~p~~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 538 (597)
.++.++.+ .+.+..-....++. .|.+. ..+..|+.++...|+.++|...++++.....
T Consensus 585 ~ll~~~~r---~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l~~ 649 (894)
T COG2909 585 QLLRAWLR---LDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELERLLL 649 (894)
T ss_pred HHHHHHHH---HhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhc
Confidence 44444333 33333333333332 23321 1123677777778888888877777766443
No 327
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=86.82 E-value=1.4 Score=24.53 Aligned_cols=29 Identities=24% Similarity=0.032 Sum_probs=16.0
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcCC
Q 007573 476 WGSLLAACVINLNVELGELAAKKMRELDP 504 (597)
Q Consensus 476 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~p 504 (597)
|..+...+...|+++.|...++++++..|
T Consensus 4 ~~~~a~~~~~~~~~~~a~~~~~~~~~~~~ 32 (34)
T smart00028 4 LYNLGNAYLKLGDYDEALEYYEKALELDP 32 (34)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHccCC
Confidence 44444555555556666666555555544
No 328
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=85.99 E-value=10 Score=38.74 Aligned_cols=124 Identities=15% Similarity=-0.020 Sum_probs=70.3
Q ss_pred CCChhHHHHHHHhcccCCcchHHHHHHHHHcCCChHHHHHHHhhcCCCCCCchHHHHHHHHHHhcCCHHHHHHHHhhcCC
Q 007573 187 KGEVDKARALSDYMSFKNVVSWTVMITGYVKNERFCEARELFYRMPDYDKNVFVVTAMITGFCKVGMLENARLLFERIQP 266 (597)
Q Consensus 187 ~g~~~~A~~~~~~m~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 266 (597)
.|+++.|..++..+. ....+.++..+.+.|-.++|+++- +|..- -.....+.|+++.|.++..+.
T Consensus 599 rrd~~~a~~vLp~I~---k~~rt~va~Fle~~g~~e~AL~~s-------~D~d~---rFelal~lgrl~iA~~la~e~-- 663 (794)
T KOG0276|consen 599 RRDLEVADGVLPTIP---KEIRTKVAHFLESQGMKEQALELS-------TDPDQ---RFELALKLGRLDIAFDLAVEA-- 663 (794)
T ss_pred hccccccccccccCc---hhhhhhHHhHhhhccchHhhhhcC-------CChhh---hhhhhhhcCcHHHHHHHHHhh--
Confidence 455555555433332 223344555555666666655432 22211 123345667777777766543
Q ss_pred CChhHHHHHHHHHHHcCChhHHHHHHHHhHHCCCCCCHHHHHHHHHHHhccchhHHHHHHHHHHHHhC
Q 007573 267 KDCVSFNAMIAGYAQNGVAEEALRLFSGMIKMDMQPDDATLVSVFTACSALQLLNEGRQSHVLVIRNG 334 (597)
Q Consensus 267 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 334 (597)
.+..-|..|..+....+++..|.+.|.+... |..++-.+...|+.+....+-....+.|
T Consensus 664 ~s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d---------~~~LlLl~t~~g~~~~l~~la~~~~~~g 722 (794)
T KOG0276|consen 664 NSEVKWRQLGDAALSAGELPLASECFLRARD---------LGSLLLLYTSSGNAEGLAVLASLAKKQG 722 (794)
T ss_pred cchHHHHHHHHHHhhcccchhHHHHHHhhcc---------hhhhhhhhhhcCChhHHHHHHHHHHhhc
Confidence 3455688888888888888888888876554 3355555556666555555444444444
No 329
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=85.75 E-value=5.7 Score=29.75 Aligned_cols=61 Identities=13% Similarity=0.141 Sum_probs=43.7
Q ss_pred HHHHHHHHHHHHHCCCCCChHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChHHHHHHH
Q 007573 386 YEKALIFFSQMGLNGFDPDGITFLSLLSACGHAGKVNESMDLFELMVKVYGIIPSSEHYTCLV 448 (597)
Q Consensus 386 ~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~ 448 (597)
.-++.+-++.+....+-|++......+++|.+.+++..|.++|+.+..+.+ .+...|..++
T Consensus 23 ~we~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K~~--~~~~~y~~~l 83 (103)
T cd00923 23 GWELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDKCG--AHKEIYPYIL 83 (103)
T ss_pred HHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHcc--CchhhHHHHH
Confidence 335556666666667888888899999999999999999999887764322 2444565554
No 330
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=85.47 E-value=3.3 Score=36.82 Aligned_cols=51 Identities=14% Similarity=0.074 Sum_probs=23.0
Q ss_pred HHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCcHHHHHHHHHH
Q 007573 483 CVINLNVELGELAAKKMRELDPQNSAVYVMLSNLYAAAGMWRDVTRVRLLM 533 (597)
Q Consensus 483 ~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 533 (597)
+.+..+++.+..--++++++.|+.......++..+.....+++|+..+.+.
T Consensus 54 hlk~~~~~~v~~dcrralql~~N~vk~h~flg~~~l~s~~~~eaI~~Lqra 104 (284)
T KOG4642|consen 54 HLKLKHWEPVEEDCRRALQLDPNLVKAHYFLGQWLLQSKGYDEAIKVLQRA 104 (284)
T ss_pred HHHhhhhhhhhhhHHHHHhcChHHHHHHHHHHHHHHhhccccHHHHHHHHH
Confidence 333444444444444444444444444444444444444444444444444
No 331
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=85.44 E-value=2 Score=24.85 Aligned_cols=29 Identities=17% Similarity=0.220 Sum_probs=25.7
Q ss_pred chHHHHHHHHHhcCCcHHHHHHHHHHHhC
Q 007573 508 AVYVMLSNLYAAAGMWRDVTRVRLLMKEQ 536 (597)
Q Consensus 508 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 536 (597)
.+|..++.+|...|++++|.+.+++..+.
T Consensus 2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~ 30 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGDYEEALEYFEKALEL 30 (34)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 36889999999999999999999998763
No 332
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=85.04 E-value=15 Score=37.55 Aligned_cols=124 Identities=19% Similarity=0.099 Sum_probs=65.2
Q ss_pred cCCChHHHHHHHccCCCCCchhHHHHHHHHHhCCChhHHHHHHHhcccCCcchHHHHHHHHHcCCChHHHHHHHhhcCCC
Q 007573 155 KHGRLEEATRLFEQMPRRNVISYTAMLDGFMKKGEVDKARALSDYMSFKNVVSWTVMITGYVKNERFCEARELFYRMPDY 234 (597)
Q Consensus 155 ~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 234 (597)
-.|+++.|..++..+++ ...+.++..+.++|..++|+++ .+|.... .....+.|+++.|.++..+.
T Consensus 598 mrrd~~~a~~vLp~I~k---~~rt~va~Fle~~g~~e~AL~~-----s~D~d~r---Felal~lgrl~iA~~la~e~--- 663 (794)
T KOG0276|consen 598 LRRDLEVADGVLPTIPK---EIRTKVAHFLESQGMKEQALEL-----STDPDQR---FELALKLGRLDIAFDLAVEA--- 663 (794)
T ss_pred hhccccccccccccCch---hhhhhHHhHhhhccchHhhhhc-----CCChhhh---hhhhhhcCcHHHHHHHHHhh---
Confidence 44566666665555542 2334555666666666666654 2232211 12233556666666655543
Q ss_pred CCCchHHHHHHHHHHhcCCHHHHHHHHhhcCCCChhHHHHHHHHHHHcCChhHHHHHHHHhHHC
Q 007573 235 DKNVFVVTAMITGFCKVGMLENARLLFERIQPKDCVSFNAMIAGYAQNGVAEEALRLFSGMIKM 298 (597)
Q Consensus 235 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 298 (597)
.+..-|..|.++....|++..|.+.|.+... |..|+-.+...|+.+....+-....+.
T Consensus 664 -~s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d-----~~~LlLl~t~~g~~~~l~~la~~~~~~ 721 (794)
T KOG0276|consen 664 -NSEVKWRQLGDAALSAGELPLASECFLRARD-----LGSLLLLYTSSGNAEGLAVLASLAKKQ 721 (794)
T ss_pred -cchHHHHHHHHHHhhcccchhHHHHHHhhcc-----hhhhhhhhhhcCChhHHHHHHHHHHhh
Confidence 2344466666666666666666666665443 445555555555555444444333333
No 333
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=84.94 E-value=2.7 Score=27.67 Aligned_cols=32 Identities=16% Similarity=0.094 Sum_probs=25.7
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhcCCCCCch
Q 007573 478 SLLAACVINLNVELGELAAKKMRELDPQNSAV 509 (597)
Q Consensus 478 ~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~ 509 (597)
.+.-++.+.|++++|.+..+.+++.+|++..+
T Consensus 6 ~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Qa 37 (53)
T PF14853_consen 6 YLAIGHYKLGEYEKARRYCDALLEIEPDNRQA 37 (53)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHHHHHTTS-HHH
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHhhCCCcHHH
Confidence 45567889999999999999999999998654
No 334
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=84.88 E-value=6.2 Score=34.41 Aligned_cols=76 Identities=17% Similarity=0.125 Sum_probs=52.2
Q ss_pred HhhcCCHHHHHHHHhhCCCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC----CCchHHHHHHHHHhcCCcH
Q 007573 451 LSRAGQLEKAWQITQGMPFEA--DTGVWGSLLAACVINLNVELGELAAKKMRELDPQ----NSAVYVMLSNLYAAAGMWR 524 (597)
Q Consensus 451 ~~~~g~~~~A~~~~~~~~~~p--~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~----~~~~~~~l~~~~~~~g~~~ 524 (597)
..+.|+ ++|.+.|-++...| +....-..+..|....|.++++.++-+++++.++ |+.++..|+.+|.+.|+++
T Consensus 117 Wsr~~d-~~A~~~fL~~E~~~~l~t~elq~aLAtyY~krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e 195 (203)
T PF11207_consen 117 WSRFGD-QEALRRFLQLEGTPELETAELQYALATYYTKRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYE 195 (203)
T ss_pred hhccCc-HHHHHHHHHHcCCCCCCCHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchh
Confidence 345555 56666666665233 2333333344444577999999999999987433 4888999999999999998
Q ss_pred HHH
Q 007573 525 DVT 527 (597)
Q Consensus 525 ~A~ 527 (597)
.|-
T Consensus 196 ~AY 198 (203)
T PF11207_consen 196 QAY 198 (203)
T ss_pred hhh
Confidence 874
No 335
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=84.77 E-value=1.1e+02 Score=37.58 Aligned_cols=144 Identities=12% Similarity=0.018 Sum_probs=84.7
Q ss_pred HHHHHHHhCCChhHHHHHHHhc----ccCC--cchHHHHHHHHHcCCChHHHHHHHhh-cCCCCCCchHHHHHHHHHHhc
Q 007573 179 AMLDGFMKKGEVDKARALSDYM----SFKN--VVSWTVMITGYVKNERFCEARELFYR-MPDYDKNVFVVTAMITGFCKV 251 (597)
Q Consensus 179 ~li~~~~~~g~~~~A~~~~~~m----~~~~--~~~~~~ll~~~~~~g~~~~a~~~~~~-~~~~~~~~~~~~~l~~~~~~~ 251 (597)
.+..+-.+.+.+.+|+..+++- .+.+ ..-|..+...|+..+++|....+... ... | .....|-.....
T Consensus 1388 tLa~aSfrc~~y~RalmylEs~~~~ek~~~~~e~l~fllq~lY~~i~dpDgV~Gv~~~r~a~--~---sl~~qil~~e~~ 1462 (2382)
T KOG0890|consen 1388 TLARASFRCKAYARALMYLESHRSTEKEKETEEALYFLLQNLYGSIHDPDGVEGVSARRFAD--P---SLYQQILEHEAS 1462 (2382)
T ss_pred HHHHHHHhhHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHhcCCcchhhhHHHHhhcC--c---cHHHHHHHHHhh
Confidence 5566667788888888888873 2221 22344444588888888877777663 221 2 223344556667
Q ss_pred CCHHHHHHHHhhcCCCC---hhHHHHHHHHHHHcCChhHHHHHHHHhHHCCCCCCHHHHH-HHHHHHhccchhHHHHHHH
Q 007573 252 GMLENARLLFERIQPKD---CVSFNAMIAGYAQNGVAEEALRLFSGMIKMDMQPDDATLV-SVFTACSALQLLNEGRQSH 327 (597)
Q Consensus 252 g~~~~A~~~~~~~~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~-~ll~~~~~~~~~~~a~~~~ 327 (597)
|++..|...|+.+...+ ..+++-++......|.++.++...+-.... ..+....++ .-+.+--+.++++.....+
T Consensus 1463 g~~~da~~Cye~~~q~~p~~~~~~~g~l~sml~~~~l~t~i~~~dg~~~~-~se~~~~~~s~~~eaaW~l~qwD~~e~~l 1541 (2382)
T KOG0890|consen 1463 GNWADAAACYERLIQKDPDKEKHHSGVLKSMLAIQHLSTEILHLDGLIIN-RSEEVDELNSLGVEAAWRLSQWDLLESYL 1541 (2382)
T ss_pred ccHHHHHHHHHHhhcCCCccccchhhHHHhhhcccchhHHHhhhcchhhc-cCHHHHHHHHHHHHHHhhhcchhhhhhhh
Confidence 88989999998887643 346777777777777777776654443332 122222222 2223334556666665554
Q ss_pred H
Q 007573 328 V 328 (597)
Q Consensus 328 ~ 328 (597)
.
T Consensus 1542 ~ 1542 (2382)
T KOG0890|consen 1542 S 1542 (2382)
T ss_pred h
Confidence 4
No 336
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=84.19 E-value=12 Score=32.05 Aligned_cols=63 Identities=16% Similarity=0.139 Sum_probs=37.8
Q ss_pred CCCC-HHHHHHHHHHHHhcC-----------CHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCcHHHHHHHHHHHhC
Q 007573 469 FEAD-TGVWGSLLAACVINL-----------NVELGELAAKKMRELDPQNSAVYVMLSNLYAAAGMWRDVTRVRLLMKEQ 536 (597)
Q Consensus 469 ~~p~-~~~~~~l~~~~~~~g-----------~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 536 (597)
+.|+ ..++..++.++...+ .+++|...|+++...+|.+.. |..-+.+. ++|-+++.++.+.
T Consensus 64 I~P~~hdAlw~lGnA~ts~A~l~~d~~~A~~~F~kA~~~FqkAv~~~P~ne~-Y~ksLe~~------~kap~lh~e~~~~ 136 (186)
T PF06552_consen 64 INPNKHDALWCLGNAYTSLAFLTPDTAEAEEYFEKATEYFQKAVDEDPNNEL-YRKSLEMA------AKAPELHMEIHKQ 136 (186)
T ss_dssp H-TT-HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH-TT-HH-HHHHHHHH------HTHHHHHHHHHHS
T ss_pred cCCchHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHhcCCCcHH-HHHHHHHH------HhhHHHHHHHHHH
Confidence 3554 345555555554333 267788888888889998765 44443433 3577888888776
Q ss_pred CC
Q 007573 537 GV 538 (597)
Q Consensus 537 ~~ 538 (597)
+.
T Consensus 137 ~~ 138 (186)
T PF06552_consen 137 GL 138 (186)
T ss_dssp SS
T ss_pred Hh
Confidence 54
No 337
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=84.14 E-value=7 Score=29.64 Aligned_cols=60 Identities=13% Similarity=0.168 Sum_probs=41.6
Q ss_pred HHHHHHHHHHHCCCCCChHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChHHHHHHHH
Q 007573 388 KALIFFSQMGLNGFDPDGITFLSLLSACGHAGKVNESMDLFELMVKVYGIIPSSEHYTCLVD 449 (597)
Q Consensus 388 ~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~ 449 (597)
+..+-++.+....+-|++......+.+|.+.+++..|.++|+.+..+.+ +....|..++.
T Consensus 28 e~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K~~--~~~~~Y~~~lq 87 (108)
T PF02284_consen 28 ELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDKCG--NKKEIYPYILQ 87 (108)
T ss_dssp HHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHTT--T-TTHHHHHHH
T ss_pred HHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHHcc--ChHHHHHHHHH
Confidence 5566666666677889999999999999999999999999998876533 33336766653
No 338
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=83.93 E-value=5.8 Score=35.50 Aligned_cols=63 Identities=10% Similarity=-0.069 Sum_probs=44.1
Q ss_pred HHHHHHHHHHhcCCHH-------HHHHHHHHHHhcCCC--C----CchHHHHHHHHHhcCCcHHHHHHHHHHHhCC
Q 007573 475 VWGSLLAACVINLNVE-------LGELAAKKMRELDPQ--N----SAVYVMLSNLYAAAGMWRDVTRVRLLMKEQG 537 (597)
Q Consensus 475 ~~~~l~~~~~~~g~~~-------~a~~~~~~~~~~~p~--~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 537 (597)
.+..+.+.|...|+.+ .|...|+++.+.+.. . ......++.+..+.|++++|.+.+.++...+
T Consensus 120 l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~l~YLigeL~rrlg~~~eA~~~fs~vi~~~ 195 (214)
T PF09986_consen 120 LCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEATLLYLIGELNRRLGNYDEAKRWFSRVIGSK 195 (214)
T ss_pred HHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHcCC
Confidence 4555666677777644 455555555544322 1 4566788999999999999999999998754
No 339
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=83.26 E-value=1.8 Score=25.35 Aligned_cols=24 Identities=17% Similarity=0.260 Sum_probs=12.1
Q ss_pred CCcccHHHHHHHHHHhcCCHHHHH
Q 007573 336 EANVSVCNAVITMYSRCGGILDSE 359 (597)
Q Consensus 336 ~~~~~~~~~l~~~~~~~g~~~~A~ 359 (597)
|.+...|+.+...|...|++++|+
T Consensus 10 P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 10 PNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred CCCHHHHHHHHHHHHHCcCHHhhc
Confidence 334445555555555555555543
No 340
>TIGR02270 conserved hypothetical protein. Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.
Probab=83.12 E-value=53 Score=32.87 Aligned_cols=232 Identities=9% Similarity=-0.027 Sum_probs=137.9
Q ss_pred HHHHHhcCChHHHHHHHhhcCC--CCcchHHHHHHHHHhCCChhHHHHHHhhCCCCCcchHHHHHHHHHcCCChHHHHHH
Q 007573 57 ISALSRAGKISAARQLFDQMTT--KDVITWNAIITGYWQNGFLQESKNLFQSMPVKNIVSWNCMIAGCIDNDRIDDAFDY 134 (597)
Q Consensus 57 ~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~ 134 (597)
|+++...| +.+...+-.... ++...+-....++.........-.+.+.+..++.......++++...+.......+
T Consensus 45 LdgL~~~G--~~a~~~L~~aL~~d~~~ev~~~aa~al~~~~~~~~~~~L~~~L~d~~~~vr~aaa~ALg~i~~~~a~~~L 122 (410)
T TIGR02270 45 VDGLVLAG--KAATELLVSALAEADEPGRVACAALALLAQEDALDLRSVLAVLQAGPEGLCAGIQAALGWLGGRQAEPWL 122 (410)
T ss_pred HHHHHHhh--HhHHHHHHHHHhhCCChhHHHHHHHHHhccCChHHHHHHHHHhcCCCHHHHHHHHHHHhcCCchHHHHHH
Confidence 77887888 566776655553 33333443333443333333355566666666777888899999888877766666
Q ss_pred HccCCCCChhhHHHHHHHHHcCCChHHHHHHHccCCCCCchhHHHHHHHHHhCCChhHHHHHHHhcccCCcchHHHHHHH
Q 007573 135 FQAMPERNTATYNAMISGFLKHGRLEEATRLFEQMPRRNVISYTAMLDGFMKKGEVDKARALSDYMSFKNVVSWTVMITG 214 (597)
Q Consensus 135 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~ll~~ 214 (597)
..-+..+++.+..+.+.++...+. +-...+..-+..+|...-..-+.++...++.+..-.+..-...+|...-..-+.+
T Consensus 123 ~~~L~~~~p~vR~aal~al~~r~~-~~~~~L~~~L~d~d~~Vra~A~raLG~l~~~~a~~~L~~al~d~~~~VR~aA~~a 201 (410)
T TIGR02270 123 EPLLAASEPPGRAIGLAALGAHRH-DPGPALEAALTHEDALVRAAALRALGELPRRLSESTLRLYLRDSDPEVRFAALEA 201 (410)
T ss_pred HHHhcCCChHHHHHHHHHHHhhcc-ChHHHHHHHhcCCCHHHHHHHHHHHHhhccccchHHHHHHHcCCCHHHHHHHHHH
Confidence 666667777777667777765542 2222233333456777777778888777776544444444456677777777788
Q ss_pred HHcCCChHHHHHHHhh-cCCCCCCchHHHHHHHHHHhcCCHHHHHHHHhhcCCCChhHHHHHHHHHHHcCChhHHHHHHH
Q 007573 215 YVKNERFCEARELFYR-MPDYDKNVFVVTAMITGFCKVGMLENARLLFERIQPKDCVSFNAMIAGYAQNGVAEEALRLFS 293 (597)
Q Consensus 215 ~~~~g~~~~a~~~~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 293 (597)
....|. .+|...+.. ... ++......+...+...|. +++...+..+.... .+-...+.++.+.|+...+-.+..
T Consensus 202 l~~lG~-~~A~~~l~~~~~~--~g~~~~~~l~~~lal~~~-~~a~~~L~~ll~d~-~vr~~a~~AlG~lg~p~av~~L~~ 276 (410)
T TIGR02270 202 GLLAGS-RLAWGVCRRFQVL--EGGPHRQRLLVLLAVAGG-PDAQAWLRELLQAA-ATRREALRAVGLVGDVEAAPWCLE 276 (410)
T ss_pred HHHcCC-HhHHHHHHHHHhc--cCccHHHHHHHHHHhCCc-hhHHHHHHHHhcCh-hhHHHHHHHHHHcCCcchHHHHHH
Confidence 888887 566555544 333 444444444444433333 35555555544322 245566667777777776665555
Q ss_pred HhH
Q 007573 294 GMI 296 (597)
Q Consensus 294 ~m~ 296 (597)
.|.
T Consensus 277 ~l~ 279 (410)
T TIGR02270 277 AMR 279 (410)
T ss_pred Hhc
Confidence 543
No 341
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=82.43 E-value=1 Score=37.44 Aligned_cols=25 Identities=8% Similarity=0.175 Sum_probs=12.2
Q ss_pred hhhHHHHHHHHHcCCChHHHHHHHc
Q 007573 143 TATYNAMISGFLKHGRLEEATRLFE 167 (597)
Q Consensus 143 ~~~~~~l~~~~~~~g~~~~A~~~~~ 167 (597)
....+.++..|++.++.++..+.++
T Consensus 42 ~~~~~~L~~ly~~~~~~~~l~~~L~ 66 (143)
T PF00637_consen 42 PDLHTLLLELYIKYDPYEKLLEFLK 66 (143)
T ss_dssp HHHHHHHHHHHHCTTTCCHHHHTTT
T ss_pred HHHHHHHHHHHHhcCCchHHHHHcc
Confidence 4444555555555544444444444
No 342
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=82.19 E-value=4.4 Score=30.33 Aligned_cols=41 Identities=17% Similarity=0.188 Sum_probs=21.0
Q ss_pred HHHHHHhcCCCCCchHHHHHHHHHhcCCcHHHHHHHHHHHh
Q 007573 495 AAKKMRELDPQNSAVYVMLSNLYAAAGMWRDVTRVRLLMKE 535 (597)
Q Consensus 495 ~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 535 (597)
.+++.++.+|+|......++..+...|++++|.+.+-.+.+
T Consensus 10 al~~~~a~~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~ 50 (90)
T PF14561_consen 10 ALEAALAANPDDLDARYALADALLAAGDYEEALDQLLELVR 50 (90)
T ss_dssp HHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHC
T ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 34444455555555555555555555555555555555544
No 343
>PRK12798 chemotaxis protein; Reviewed
Probab=81.94 E-value=56 Score=32.25 Aligned_cols=205 Identities=13% Similarity=0.141 Sum_probs=132.4
Q ss_pred cCCHHHHHHHHhccC----CCChhhHHHHHHHH-HHcCCHHHHHHHHHHHHHCCCCCCh----HHHHHHHHHHhccCcHH
Q 007573 352 CGGILDSELAFRQIH----SPNLVSWNTIIAAF-AQHGHYEKALIFFSQMGLNGFDPDG----ITFLSLLSACGHAGKVN 422 (597)
Q Consensus 352 ~g~~~~A~~~~~~~~----~~~~~~~~~li~~~-~~~g~~~~A~~~~~~m~~~g~~p~~----~~~~~ll~~~~~~g~~~ 422 (597)
.|+.++|.+.+..+. ++....+-.|+.+- ....++.+|+++|+...-. -|-. .....-+-.....|+.+
T Consensus 125 ~Gr~~~a~~~La~i~~~~l~~~lg~~laLv~a~l~~~~dP~~Al~~lD~aRLl--aPGTLvEEAALRRsi~la~~~g~~~ 202 (421)
T PRK12798 125 SGRGREARKLLAGVAPEYLPAELGAYLALVQGNLMVATDPATALKLLDQARLL--APGTLVEEAALRRSLFIAAQLGDAD 202 (421)
T ss_pred cCCHHHHHHHhhcCChhhcCchhhhHHHHHHHHHhcccCHHHHHHHHHHHHHh--CCchHHHHHHHHHhhHHHHhcCcHH
Confidence 588888988888887 34455677776654 4467899999999988753 4443 23444455667889999
Q ss_pred HHHHHHHHhHHhcCCCCChHHHHH-HHHHHhhcC---CHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 007573 423 ESMDLFELMVKVYGIIPSSEHYTC-LVDILSRAG---QLEKAWQITQGMPFEADTGVWGSLLAACVINLNVELGELAAKK 498 (597)
Q Consensus 423 ~a~~~~~~~~~~~~~~p~~~~~~~-l~~~~~~~g---~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~ 498 (597)
++..+-....+.+.-.|-...|.. +...+.+.+ +.+.-..++..|...--...|..+...-...|+.+.|...-++
T Consensus 203 rf~~la~~Y~rRF~~S~YA~~F~~~F~~~~~~~~d~~~~~~l~~~ls~~d~~~q~~lYL~iAR~Ali~Gk~~lA~~As~~ 282 (421)
T PRK12798 203 KFEALARNYLRRFRHSPYASQFAQRFVDLVVRLDDEIRDARLVEILSFMDPERQRELYLRIARAALIDGKTELARFASER 282 (421)
T ss_pred HHHHHHHHHHHHhccCchHHHHHHHHHHHHHhccccccHHHHHHHHHhcCchhHHHHHHHHHHHHHHcCcHHHHHHHHHH
Confidence 988888777776666665443333 333444333 4455556666665222355888888889999999999999999
Q ss_pred HHhcCCCCCchHHHHHHHHH-----hcCCcHHHHHHHHHHHhCCCccCCCeeEEEECCEEEEEEeCCCCCcchHHHHHHH
Q 007573 499 MRELDPQNSAVYVMLSNLYA-----AAGMWRDVTRVRLLMKEQGVTKQCAYSWIEIGNKVHYFLGGDMSHPCIDKIHLEL 573 (597)
Q Consensus 499 ~~~~~p~~~~~~~~l~~~~~-----~~g~~~~A~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~p~~~~~~~~l 573 (597)
++.+...+ ..-...+..|. -..++++|.+.+..+....+ +|....+...-
T Consensus 283 A~~L~~~~-~~~~~ra~LY~aaa~v~s~~~~~al~~L~~I~~~~L------------------------~~~Dr~Ll~AA 337 (421)
T PRK12798 283 ALKLADPD-SADAARARLYRGAALVASDDAESALEELSQIDRDKL------------------------SERDRALLEAA 337 (421)
T ss_pred HHHhccCC-CcchHHHHHHHHHHccCcccHHHHHHHHhcCChhhC------------------------ChhhHHHHHHH
Confidence 99886432 22223333333 35567777777766544333 55556655555
Q ss_pred HHHHHHHhhc
Q 007573 574 KRASVQMKSV 583 (597)
Q Consensus 574 ~~~~~~~~~~ 583 (597)
...-.++.++
T Consensus 338 ~~va~~V~~~ 347 (421)
T PRK12798 338 RSVARQVRRA 347 (421)
T ss_pred HHHHHHHhcC
Confidence 5555555544
No 344
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=81.93 E-value=3 Score=26.16 Aligned_cols=27 Identities=19% Similarity=0.229 Sum_probs=23.2
Q ss_pred HHHHHHHHhcCCcHHHHHHHHHHHhCC
Q 007573 511 VMLSNLYAAAGMWRDVTRVRLLMKEQG 537 (597)
Q Consensus 511 ~~l~~~~~~~g~~~~A~~~~~~~~~~~ 537 (597)
..|+.+|...|+.+.|.++++++...|
T Consensus 3 LdLA~ayie~Gd~e~Ar~lL~evl~~~ 29 (44)
T TIGR03504 3 LDLARAYIEMGDLEGARELLEEVIEEG 29 (44)
T ss_pred hHHHHHHHHcCChHHHHHHHHHHHHcC
Confidence 468899999999999999999988654
No 345
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=81.87 E-value=0.93 Score=42.46 Aligned_cols=86 Identities=9% Similarity=0.094 Sum_probs=48.7
Q ss_pred cCCHHHHHHHHhhCC-CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCcHHHHHHHH
Q 007573 454 AGQLEKAWQITQGMP-FEA-DTGVWGSLLAACVINLNVELGELAAKKMRELDPQNSAVYVMLSNLYAAAGMWRDVTRVRL 531 (597)
Q Consensus 454 ~g~~~~A~~~~~~~~-~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~ 531 (597)
.|.+++|.+.+.... ..| ....+.--.+++.+.+....|++-+..+++++|+...-|-.-+.+....|+|++|...+.
T Consensus 127 ~G~~~~ai~~~t~ai~lnp~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Dsa~~ykfrg~A~rllg~~e~aa~dl~ 206 (377)
T KOG1308|consen 127 DGEFDTAIELFTSAIELNPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPDSAKGYKFRGYAERLLGNWEEAAHDLA 206 (377)
T ss_pred CcchhhhhcccccccccCCchhhhcccccceeeeccCCchhhhhhhhhhccCcccccccchhhHHHHHhhchHHHHHHHH
Confidence 445555555554433 222 333444444555566666666666666666666665556666666666666666666666
Q ss_pred HHHhCCCc
Q 007573 532 LMKEQGVT 539 (597)
Q Consensus 532 ~~~~~~~~ 539 (597)
...+.+..
T Consensus 207 ~a~kld~d 214 (377)
T KOG1308|consen 207 LACKLDYD 214 (377)
T ss_pred HHHhcccc
Confidence 66555543
No 346
>PF14432 DYW_deaminase: DYW family of nucleic acid deaminases
Probab=81.62 E-value=1.3 Score=35.16 Aligned_cols=27 Identities=44% Similarity=0.756 Sum_probs=21.6
Q ss_pred CeeEEEECCEEEEEEeCCCCCcchHHHHHHH
Q 007573 543 AYSWIEIGNKVHYFLGGDMSHPCIDKIHLEL 573 (597)
Q Consensus 543 ~~s~~~~~~~~~~~~~~~~~~p~~~~~~~~l 573 (597)
|+||+++ +.|++|+.+||....+...+
T Consensus 2 ~~~w~~~----h~F~sgd~shp~~~~~~~~~ 28 (116)
T PF14432_consen 2 GCSWIEV----HSFVSGDRSHPQSELINKMK 28 (116)
T ss_pred CCCccce----EEEEeCCCcCccHHHHHHHH
Confidence 6789876 99999999999985555544
No 347
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=81.19 E-value=3.1 Score=22.50 Aligned_cols=20 Identities=20% Similarity=0.273 Sum_probs=10.6
Q ss_pred HHHHHHhhcCCHHHHHHHHh
Q 007573 446 CLVDILSRAGQLEKAWQITQ 465 (597)
Q Consensus 446 ~l~~~~~~~g~~~~A~~~~~ 465 (597)
.+..++...|++++|..+++
T Consensus 6 ~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 6 ALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHcCCHHHHHHHHh
Confidence 34455555555555555543
No 348
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=80.87 E-value=90 Score=33.99 Aligned_cols=215 Identities=15% Similarity=0.039 Sum_probs=114.0
Q ss_pred hccchhHHHHHHHHHHHHhCCCCccc-------HHHHHHH-HHHhcCCHHHHHHHHhccC--------CCChhhHHHHHH
Q 007573 315 SALQLLNEGRQSHVLVIRNGFEANVS-------VCNAVIT-MYSRCGGILDSELAFRQIH--------SPNLVSWNTIIA 378 (597)
Q Consensus 315 ~~~~~~~~a~~~~~~~~~~~~~~~~~-------~~~~l~~-~~~~~g~~~~A~~~~~~~~--------~~~~~~~~~li~ 378 (597)
....++.+|..+..++...--.|+.. .+++|-. .....|+++.|.++.+... ....+.+..+..
T Consensus 426 ~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~~~ 505 (894)
T COG2909 426 ASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVALSVLGE 505 (894)
T ss_pred HHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhhhhhhH
Confidence 35567777777777665543232221 2333321 2234578888877766543 245567777778
Q ss_pred HHHHcCCHHHHHHHHHHHHHCCCCCChHHHH---HHH--HHHhccCcH--HHHHHHHHHhHHhcCC-CC----ChHHHHH
Q 007573 379 AFAQHGHYEKALIFFSQMGLNGFDPDGITFL---SLL--SACGHAGKV--NESMDLFELMVKVYGI-IP----SSEHYTC 446 (597)
Q Consensus 379 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~---~ll--~~~~~~g~~--~~a~~~~~~~~~~~~~-~p----~~~~~~~ 446 (597)
+..-.|++++|..+.++..+.--.-+...+. .+. ..+...|+. .+....|......+.. .| -..++..
T Consensus 506 a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~~~~f~~~~r~~ 585 (894)
T COG2909 506 AAHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQKPRHEFLVRIRAQ 585 (894)
T ss_pred HHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHHH
Confidence 8888999999999887765532122332222 221 234455632 3333334333322111 11 1234444
Q ss_pred HHHHHhhcCCHHHHHHHH----hhCC-CCCCH--H--HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC--CchHHH---
Q 007573 447 LVDILSRAGQLEKAWQIT----QGMP-FEADT--G--VWGSLLAACVINLNVELGELAAKKMRELDPQN--SAVYVM--- 512 (597)
Q Consensus 447 l~~~~~~~g~~~~A~~~~----~~~~-~~p~~--~--~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~--~~~~~~--- 512 (597)
+..++.+ ++.+..-. .-.. ..|.. . .+..|+......|+.++|...+.++..+...+ ...|..
T Consensus 586 ll~~~~r---~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l~~~~~~~~~~~a~~~ 662 (894)
T COG2909 586 LLRAWLR---LDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELERLLLNGQYHVDYLAAAY 662 (894)
T ss_pred HHHHHHH---HhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCchHHHHHH
Confidence 5555544 33333222 2111 22322 1 22366777889999999999999988754332 222221
Q ss_pred --HHHHHHhcCCcHHHHHHHHH
Q 007573 513 --LSNLYAAAGMWRDVTRVRLL 532 (597)
Q Consensus 513 --l~~~~~~~g~~~~A~~~~~~ 532 (597)
-...-..+|+.+++.....+
T Consensus 663 ~v~~~lwl~qg~~~~a~~~l~~ 684 (894)
T COG2909 663 KVKLILWLAQGDKELAAEWLLK 684 (894)
T ss_pred HhhHHHhcccCCHHHHHHHHHh
Confidence 12223457888888777655
No 349
>KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=80.81 E-value=13 Score=39.00 Aligned_cols=187 Identities=18% Similarity=0.265 Sum_probs=100.7
Q ss_pred hHHHHHHHHHHHcCChhHHHHHHHHhHHCCCCCCHH----------HHHHHHHHHhccchhHHHHHHHHHHHHhCCCCcc
Q 007573 270 VSFNAMIAGYAQNGVAEEALRLFSGMIKMDMQPDDA----------TLVSVFTACSALQLLNEGRQSHVLVIRNGFEANV 339 (597)
Q Consensus 270 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~----------~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 339 (597)
.+-..++-.|....+++..+++.+.+.+ -||.. .|.-.++--.+.|+-++|....-.+.+..-+..+
T Consensus 202 d~V~nlmlSyRDvQdY~amirLVe~Lk~---iP~t~~vve~~nv~f~YaFALNRRNr~GDRakAL~~~l~lve~eg~vap 278 (1226)
T KOG4279|consen 202 DTVSNLMLSYRDVQDYDAMIRLVEDLKR---IPDTLKVVETHNVRFHYAFALNRRNRPGDRAKALNTVLPLVEKEGPVAP 278 (1226)
T ss_pred HHHHHHHhhhccccchHHHHHHHHHHHh---CcchhhhhccCceEEEeeehhcccCCCccHHHHHHHHHHHHHhcCCCCC
Confidence 3455667778888888888888888776 34322 2333333334567777777665555544322222
Q ss_pred cHHHHHHHHHHhcCCHHHHHHHHhccCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHhccC
Q 007573 340 SVCNAVITMYSRCGGILDSELAFRQIHSPNLVSWNTIIAAFAQHGHYEKALIFFSQMGLNGFDPDGITFLSLLSACGHAG 419 (597)
Q Consensus 340 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g 419 (597)
++||-+|++ ++.|- +-+.|...+..+.|.++|++.-+ +.|+..+=..+...+...|
T Consensus 279 -------Dm~Cl~GRI------YKDmF---------~~S~ytDa~s~~~a~~WyrkaFe--veP~~~sGIN~atLL~aaG 334 (1226)
T KOG4279|consen 279 -------DMYCLCGRI------YKDMF---------IASNYTDAESLNHAIEWYRKAFE--VEPLEYSGINLATLLRAAG 334 (1226)
T ss_pred -------ceeeeechh------hhhhh---------hccCCcchhhHHHHHHHHHHHhc--cCchhhccccHHHHHHHhh
Confidence 233344432 11111 11234445566778888887765 4666543222222222222
Q ss_pred c-HHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 007573 420 K-VNESMDLFELMVKVYGIIPSSEHYTCLVDILSRAGQLEKAWQITQGMPFEADTGVWGSLLAACVINLNVELGELAAKK 498 (597)
Q Consensus 420 ~-~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~ 498 (597)
. ++...++ ++. | ..|-..+++.|.++.-..+++-.- .+.+-.-.+|+.+|++..+.
T Consensus 335 ~~Fens~El----q~I-g--------mkLn~LlgrKG~leklq~YWdV~~----------y~~asVLAnd~~kaiqAae~ 391 (1226)
T KOG4279|consen 335 EHFENSLEL----QQI-G--------MKLNSLLGRKGALEKLQEYWDVAT----------YFEASVLANDYQKAIQAAEM 391 (1226)
T ss_pred hhccchHHH----HHH-H--------HHHHHHhhccchHHHHHHHHhHHH----------hhhhhhhccCHHHHHHHHHH
Confidence 2 1211111 111 1 234456678888877776665321 23444456788888888888
Q ss_pred HHhcCCCC
Q 007573 499 MRELDPQN 506 (597)
Q Consensus 499 ~~~~~p~~ 506 (597)
|.++.|+.
T Consensus 392 mfKLk~P~ 399 (1226)
T KOG4279|consen 392 MFKLKPPV 399 (1226)
T ss_pred HhccCCce
Confidence 88887763
No 350
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=80.81 E-value=42 Score=30.13 Aligned_cols=58 Identities=22% Similarity=0.298 Sum_probs=33.0
Q ss_pred HHHhhcCCHHHHHHHHhhCC---CCCCHHHHHH---HHHH--HH-hcCCHHHHHHHHHHHHhcCCCC
Q 007573 449 DILSRAGQLEKAWQITQGMP---FEADTGVWGS---LLAA--CV-INLNVELGELAAKKMRELDPQN 506 (597)
Q Consensus 449 ~~~~~~g~~~~A~~~~~~~~---~~p~~~~~~~---l~~~--~~-~~g~~~~a~~~~~~~~~~~p~~ 506 (597)
..-+..+++.+|+++|+++. ...+..-|.. ++.+ |. ...|.-.+...+++-.+++|.-
T Consensus 162 ~yaa~leqY~~Ai~iyeqva~~s~~n~LLKys~KdyflkAgLChl~~~D~v~a~~ALeky~~~dP~F 228 (288)
T KOG1586|consen 162 QYAAQLEQYSKAIDIYEQVARSSLDNNLLKYSAKDYFLKAGLCHLCKADEVNAQRALEKYQELDPAF 228 (288)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccchHHHhHHHHHHHHHHHHhHhcccHHHHHHHHHHHHhcCCcc
Confidence 33445677777877777654 2222222221 2222 22 2367777788888888888874
No 351
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=80.21 E-value=36 Score=28.97 Aligned_cols=129 Identities=11% Similarity=0.124 Sum_probs=84.6
Q ss_pred hhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCChH-HHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChH-HHHH--
Q 007573 371 VSWNTIIAAFAQHGHYEKALIFFSQMGLNGFDPDGI-TFLSLLSACGHAGKVNESMDLFELMVKVYGIIPSSE-HYTC-- 446 (597)
Q Consensus 371 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~-~~~~-- 446 (597)
..|..-+. +++.|..++|+.-|..+.+.|...-+. ............|+...|...|+++-+. .-.|... -...
T Consensus 60 d~flaAL~-lA~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~d-t~~P~~~rd~ARlr 137 (221)
T COG4649 60 DAFLAALK-LAQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAAD-TSIPQIGRDLARLR 137 (221)
T ss_pred HHHHHHHH-HHHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhcc-CCCcchhhHHHHHH
Confidence 34444333 466788899999999998877543322 2223344567789999999999998765 2233221 1222
Q ss_pred HHHHHhhcCCHHHHHHHHhhCCCC--C-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 007573 447 LVDILSRAGQLEKAWQITQGMPFE--A-DTGVWGSLLAACVINLNVELGELAAKKMRE 501 (597)
Q Consensus 447 l~~~~~~~g~~~~A~~~~~~~~~~--p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 501 (597)
-..++...|.+++...-.+-+..+ | ....-.+|.-+-.+.|++..|...|..+..
T Consensus 138 aa~lLvD~gsy~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~ 195 (221)
T COG4649 138 AAYLLVDNGSYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAN 195 (221)
T ss_pred HHHHHhccccHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHc
Confidence 234566788888888777766522 2 233556677777888999999999988876
No 352
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=80.11 E-value=45 Score=29.99 Aligned_cols=90 Identities=11% Similarity=-0.023 Sum_probs=47.5
Q ss_pred HHHHHHhhc-CCHHHHHHHHhhCC-----CCCCHHHHHHHHH---HHHhcCCHHHHHHHHHHHHhcCCCCCch-------
Q 007573 446 CLVDILSRA-GQLEKAWQITQGMP-----FEADTGVWGSLLA---ACVINLNVELGELAAKKMRELDPQNSAV------- 509 (597)
Q Consensus 446 ~l~~~~~~~-g~~~~A~~~~~~~~-----~~p~~~~~~~l~~---~~~~~g~~~~a~~~~~~~~~~~p~~~~~------- 509 (597)
.+...|... .+++.|+..|++.. .+.+...-..++. --...+++.+|+++|+++.....+++..
T Consensus 118 ~iaEiyEsdl~d~ekaI~~YE~Aae~yk~ees~ssANKC~lKvA~yaa~leqY~~Ai~iyeqva~~s~~n~LLKys~Kdy 197 (288)
T KOG1586|consen 118 EIAEIYESDLQDFEKAIAHYEQAAEYYKGEESVSSANKCLLKVAQYAAQLEQYSKAIDIYEQVARSSLDNNLLKYSAKDY 197 (288)
T ss_pred hHHHHHhhhHHHHHHHHHHHHHHHHHHcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHhHHHHH
Confidence 344555433 56666666666543 1122222223332 2346788999999999998776665321
Q ss_pred HHHHHHHHHhcCCcHHHHHHHHHHHh
Q 007573 510 YVMLSNLYAAAGMWRDVTRVRLLMKE 535 (597)
Q Consensus 510 ~~~l~~~~~~~g~~~~A~~~~~~~~~ 535 (597)
+...+-++...++.-.+...+++-.+
T Consensus 198 flkAgLChl~~~D~v~a~~ALeky~~ 223 (288)
T KOG1586|consen 198 FLKAGLCHLCKADEVNAQRALEKYQE 223 (288)
T ss_pred HHHHHHHhHhcccHHHHHHHHHHHHh
Confidence 22223333333555555555555444
No 353
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=80.01 E-value=72 Score=32.31 Aligned_cols=143 Identities=10% Similarity=0.072 Sum_probs=66.2
Q ss_pred ChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCC------hH
Q 007573 369 NLVSWNTIIAAFAQHGHYEKALIFFSQMGLNGFDPDGITFLSLLSACGHAGKVNESMDLFELMVKVYGIIPS------SE 442 (597)
Q Consensus 369 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~------~~ 442 (597)
+-..|..++..|..+ ..++-..+++++.+. .-|...+..-+..+...++.+.+..+|.++... +.|. .+
T Consensus 98 ~kmal~el~q~y~en-~n~~l~~lWer~ve~--dfnDvv~~ReLa~~yEkik~sk~a~~f~Ka~yr--fI~~~q~~~i~e 172 (711)
T COG1747 98 SKMALLELLQCYKEN-GNEQLYSLWERLVEY--DFNDVVIGRELADKYEKIKKSKAAEFFGKALYR--FIPRRQNAAIKE 172 (711)
T ss_pred hHHHHHHHHHHHHhc-CchhhHHHHHHHHHh--cchhHHHHHHHHHHHHHhchhhHHHHHHHHHHH--hcchhhhhhHHH
Confidence 334455555555555 445555555555543 223333333333333335555555555555432 2221 12
Q ss_pred HHHHHHHHHhhcCCHHHHHHHHhhCC----CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHH
Q 007573 443 HYTCLVDILSRAGQLEKAWQITQGMP----FEADTGVWGSLLAACVINLNVELGELAAKKMRELDPQNSAVYVMLSNLYA 518 (597)
Q Consensus 443 ~~~~l~~~~~~~g~~~~A~~~~~~~~----~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 518 (597)
.|..|...- ..+.+.-..+...+. ..--...+.-+-.-|....++.+|++++..+++.+..|..+.-.+..-+.
T Consensus 173 vWeKL~~~i--~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~Ys~~eN~~eai~Ilk~il~~d~k~~~ar~~~i~~lR 250 (711)
T COG1747 173 VWEKLPELI--GDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKKYSENENWTEAIRILKHILEHDEKDVWARKEIIENLR 250 (711)
T ss_pred HHHHHHHhc--cccHHHHHHHHHHHHHhhccchHHHHHHHHHHHhccccCHHHHHHHHHHHhhhcchhhhHHHHHHHHHH
Confidence 333333211 223344444433332 11112233334445666667777777777777776666555554444443
No 354
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=79.65 E-value=5.7 Score=40.24 Aligned_cols=100 Identities=13% Similarity=0.042 Sum_probs=69.7
Q ss_pred hccCcHHHHHHHHHHhHHhcCCCCC--hHHHHHHHHHHhhcCCHHHHHHHHhhCC--CCCCHHHHHHHHHHHHhcCCHHH
Q 007573 416 GHAGKVNESMDLFELMVKVYGIIPS--SEHYTCLVDILSRAGQLEKAWQITQGMP--FEADTGVWGSLLAACVINLNVEL 491 (597)
Q Consensus 416 ~~~g~~~~a~~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~g~~~~ 491 (597)
...|+...|...+..+. ...|. -.....|...+.+.|...+|-.++.+.. ....+.++..++.++....+++.
T Consensus 618 r~~gn~~~a~~cl~~a~---~~~p~~~~v~~v~la~~~~~~~~~~da~~~l~q~l~~~~sepl~~~~~g~~~l~l~~i~~ 694 (886)
T KOG4507|consen 618 RAVGNSTFAIACLQRAL---NLAPLQQDVPLVNLANLLIHYGLHLDATKLLLQALAINSSEPLTFLSLGNAYLALKNISG 694 (886)
T ss_pred eecCCcHHHHHHHHHHh---ccChhhhcccHHHHHHHHHHhhhhccHHHHHHHHHhhcccCchHHHhcchhHHHHhhhHH
Confidence 34577777877776554 34443 2344556777777888788888776543 23345577778888888888999
Q ss_pred HHHHHHHHHhcCCCCCchHHHHHHHHH
Q 007573 492 GELAAKKMRELDPQNSAVYVMLSNLYA 518 (597)
Q Consensus 492 a~~~~~~~~~~~p~~~~~~~~l~~~~~ 518 (597)
|++.++.+++++|+++..-..|...-+
T Consensus 695 a~~~~~~a~~~~~~~~~~~~~l~~i~c 721 (886)
T KOG4507|consen 695 ALEAFRQALKLTTKCPECENSLKLIRC 721 (886)
T ss_pred HHHHHHHHHhcCCCChhhHHHHHHHHH
Confidence 999999999999888877666655433
No 355
>PF13934 ELYS: Nuclear pore complex assembly
Probab=78.55 E-value=52 Score=29.82 Aligned_cols=101 Identities=15% Similarity=0.264 Sum_probs=52.6
Q ss_pred HHHHHHHHH--hCCChhHHHHHHhhCCCCCcchHHHHHHHHHcCCChHHHHHHHccCCCC--ChhhHHHHHHHHHcCCCh
Q 007573 84 WNAIITGYW--QNGFLQESKNLFQSMPVKNIVSWNCMIAGCIDNDRIDDAFDYFQAMPER--NTATYNAMISGFLKHGRL 159 (597)
Q Consensus 84 ~~~li~~~~--~~g~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~l~~~~~~~g~~ 159 (597)
+...+.++. -.+++++|++.+-.-.. .+.....++.++...|+.+.|..+++...++ +...-..++.. ..++.+
T Consensus 79 ~~~~~~g~W~LD~~~~~~A~~~L~~ps~-~~~~~~~Il~~L~~~~~~~lAL~y~~~~~p~l~s~~~~~~~~~~-La~~~v 156 (226)
T PF13934_consen 79 YIKFIQGFWLLDHGDFEEALELLSHPSL-IPWFPDKILQALLRRGDPKLALRYLRAVGPPLSSPEALTLYFVA-LANGLV 156 (226)
T ss_pred HHHHHHHHHHhChHhHHHHHHHhCCCCC-CcccHHHHHHHHHHCCChhHHHHHHHhcCCCCCCHHHHHHHHHH-HHcCCH
Confidence 444555543 34666677666633311 1222334666666677777777777766532 22222333333 455667
Q ss_pred HHHHHHHccCCCCC-chhHHHHHHHHHh
Q 007573 160 EEATRLFEQMPRRN-VISYTAMLDGFMK 186 (597)
Q Consensus 160 ~~A~~~~~~~~~~~-~~~~~~li~~~~~ 186 (597)
.+|...-+...++. ...+..++..+..
T Consensus 157 ~EAf~~~R~~~~~~~~~l~e~l~~~~~~ 184 (226)
T PF13934_consen 157 TEAFSFQRSYPDELRRRLFEQLLEHCLE 184 (226)
T ss_pred HHHHHHHHhCchhhhHHHHHHHHHHHHH
Confidence 77776666554422 2345555555543
No 356
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=78.38 E-value=4 Score=40.32 Aligned_cols=85 Identities=15% Similarity=0.050 Sum_probs=58.1
Q ss_pred HHhhcCCHHHHHHHHhhCC-CCCCHHHHHHH-HHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCcHHHH
Q 007573 450 ILSRAGQLEKAWQITQGMP-FEADTGVWGSL-LAACVINLNVELGELAAKKMRELDPQNSAVYVMLSNLYAAAGMWRDVT 527 (597)
Q Consensus 450 ~~~~~g~~~~A~~~~~~~~-~~p~~~~~~~l-~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~ 527 (597)
-+...+.++.|..++.++. .+|+-..|-+. ..++.+.+++..|+.-+.++++.+|.....|..-+.++.+.+++.+|.
T Consensus 13 ~~l~~~~fd~avdlysKaI~ldpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~~~K~Y~rrg~a~m~l~~~~~A~ 92 (476)
T KOG0376|consen 13 EALKDKVFDVAVDLYSKAIELDPNCAIYFANRALAHLKVESFGGALHDALKAIELDPTYIKAYVRRGTAVMALGEFKKAL 92 (476)
T ss_pred hhcccchHHHHHHHHHHHHhcCCcceeeechhhhhheeechhhhHHHHHHhhhhcCchhhheeeeccHHHHhHHHHHHHH
Confidence 3445566667777666554 56655443333 255777778888888888888888777777777777778888888777
Q ss_pred HHHHHHH
Q 007573 528 RVRLLMK 534 (597)
Q Consensus 528 ~~~~~~~ 534 (597)
..|+...
T Consensus 93 ~~l~~~~ 99 (476)
T KOG0376|consen 93 LDLEKVK 99 (476)
T ss_pred HHHHHhh
Confidence 7776644
No 357
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=77.91 E-value=21 Score=32.18 Aligned_cols=89 Identities=11% Similarity=-0.041 Sum_probs=64.4
Q ss_pred HHHHhhcCCHHHHHHHHhhCC---------CCCCHHHHH-----------HHHHHHHhcCCHHHHHHHHHHHHhcCCCCC
Q 007573 448 VDILSRAGQLEKAWQITQGMP---------FEADTGVWG-----------SLLAACVINLNVELGELAAKKMRELDPQNS 507 (597)
Q Consensus 448 ~~~~~~~g~~~~A~~~~~~~~---------~~p~~~~~~-----------~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~ 507 (597)
.+-+.+.|++.+|..-|.+.. .+|...-|. ..-.++...|++-++++...+++...|.+.
T Consensus 185 GN~lfk~~~ykEA~~~YreAi~~l~~L~lkEkP~e~eW~eLdk~~tpLllNy~QC~L~~~e~yevleh~seiL~~~~~nv 264 (329)
T KOG0545|consen 185 GNRLFKLGRYKEASSKYREAIICLRNLQLKEKPGEPEWLELDKMITPLLLNYCQCLLKKEEYYEVLEHCSEILRHHPGNV 264 (329)
T ss_pred hhhhhhhccHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhhhHHHHhHHHHHhhHHHHHHHHHHHHHHHhcCCchH
Confidence 344556666666665554331 445433332 223345577899999999999999999999
Q ss_pred chHHHHHHHHHhcCCcHHHHHHHHHHHhC
Q 007573 508 AVYVMLSNLYAAAGMWRDVTRVRLLMKEQ 536 (597)
Q Consensus 508 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 536 (597)
.+|..-+.+....=+.++|.+-+..+.+.
T Consensus 265 KA~frRakAhaa~Wn~~eA~~D~~~vL~l 293 (329)
T KOG0545|consen 265 KAYFRRAKAHAAVWNEAEAKADLQKVLEL 293 (329)
T ss_pred HHHHHHHHHHHhhcCHHHHHHHHHHHHhc
Confidence 99999999988888888999888887764
No 358
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=77.68 E-value=85 Score=31.84 Aligned_cols=93 Identities=9% Similarity=0.094 Sum_probs=47.6
Q ss_pred ChhHHHHHHHHHHHcCChhHHHHHHHHhHHCCCCCCHHHHHHHHHHHhccchhHHHHHHHHHHHHhCCCCcccHHHHHHH
Q 007573 268 DCVSFNAMIAGYAQNGVAEEALRLFSGMIKMDMQPDDATLVSVFTACSALQLLNEGRQSHVLVIRNGFEANVSVCNAVIT 347 (597)
Q Consensus 268 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 347 (597)
|....-+++..+.++-.+.-+..+-.+|+.-| -+...+..++..|... ..+.-..+++.+.+..+ .|++.-..|+.
T Consensus 65 ~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~--e~kmal~el~q~y~en-~n~~l~~lWer~ve~df-nDvv~~ReLa~ 140 (711)
T COG1747 65 DDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYG--ESKMALLELLQCYKEN-GNEQLYSLWERLVEYDF-NDVVIGRELAD 140 (711)
T ss_pred cchHHHHHHHHhccchHHHHHHHHHHHHHHhc--chHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcc-hhHHHHHHHHH
Confidence 33445556666666666666666666666532 3445555555555555 34444555555555442 12333333444
Q ss_pred HHHhcCCHHHHHHHHhcc
Q 007573 348 MYSRCGGILDSELAFRQI 365 (597)
Q Consensus 348 ~~~~~g~~~~A~~~~~~~ 365 (597)
.|-+ ++.+.+...|.++
T Consensus 141 ~yEk-ik~sk~a~~f~Ka 157 (711)
T COG1747 141 KYEK-IKKSKAAEFFGKA 157 (711)
T ss_pred HHHH-hchhhHHHHHHHH
Confidence 4433 5555555555444
No 359
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=77.56 E-value=85 Score=31.76 Aligned_cols=241 Identities=8% Similarity=0.029 Sum_probs=131.5
Q ss_pred hHHHHHHHHhHHCCCCCCHHHHHHHHHHHhccch------hHHHHHHHHHHHHhC-C-CCcccHHHHHHHHHHhcCCHHH
Q 007573 286 EEALRLFSGMIKMDMQPDDATLVSVFTACSALQL------LNEGRQSHVLVIRNG-F-EANVSVCNAVITMYSRCGGILD 357 (597)
Q Consensus 286 ~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~------~~~a~~~~~~~~~~~-~-~~~~~~~~~l~~~~~~~g~~~~ 357 (597)
+....+|+...+ ..|+...+...|..|...-. +.....+++...+.+ . +.....|..+.-++++.....+
T Consensus 299 s~~~~v~ee~v~--~l~t~sm~e~YI~~~lE~~~~~r~~~I~h~~~~~~~~~~~~~l~~~~~~~ys~~~l~~~t~~~~r~ 376 (568)
T KOG2396|consen 299 SRCCAVYEEAVK--TLPTESMWECYITFCLERFTFLRGKRILHTMCVFRKAHELKLLSECLYKQYSVLLLCLNTLNEARE 376 (568)
T ss_pred HHHHHHHHHHHH--HhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHhccchHhH
Confidence 344466666554 25566666666766653322 233334444444333 2 2234556666666666655444
Q ss_pred H-HHHHhccCCCChhhHHHHHHHHHHc-CCHHH-HHHHHHHHHHCCCCCChHHHHHHHHHHhccCc-HHHH--HHHHHHh
Q 007573 358 S-ELAFRQIHSPNLVSWNTIIAAFAQH-GHYEK-ALIFFSQMGLNGFDPDGITFLSLLSACGHAGK-VNES--MDLFELM 431 (597)
Q Consensus 358 A-~~~~~~~~~~~~~~~~~li~~~~~~-g~~~~-A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~-~~~a--~~~~~~~ 431 (597)
+ ..+.......+...|-.-+...... .++.- -.+++......-..+-...+.... .|+ ++.. ..++...
T Consensus 377 ~a~~l~~e~f~~s~k~~~~kl~~~~~s~sD~q~~f~~l~n~~r~~~~s~~~~~w~s~~-----~~dsl~~~~~~~Ii~a~ 451 (568)
T KOG2396|consen 377 VAVKLTTELFRDSGKMWQLKLQVLIESKSDFQMLFEELFNHLRKQVCSELLISWASAS-----EGDSLQEDTLDLIISAL 451 (568)
T ss_pred HHHHhhHHHhcchHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHhcchhHHHHHHHh-----hccchhHHHHHHHHHHH
Confidence 3 3333344456666666555554422 12211 122233333221222233333332 111 1111 1223333
Q ss_pred HHhcCCCCChH-HHHHHHHHHhhcCCHHHHHHHHhhCC--CCCCHHHHHHHHHHH--HhcCCHHHHHHHHHHHHhcCCCC
Q 007573 432 VKVYGIIPSSE-HYTCLVDILSRAGQLEKAWQITQGMP--FEADTGVWGSLLAAC--VINLNVELGELAAKKMRELDPQN 506 (597)
Q Consensus 432 ~~~~~~~p~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~--~~~g~~~~a~~~~~~~~~~~p~~ 506 (597)
.+ -..|+.. .-+.+++-+.+.|-..+|.+.+..+. .+|+...+..++..- ...-+...+..+|+.+..---.+
T Consensus 452 ~s--~~~~~~~tl~s~~l~~~~e~~~~~~ark~y~~l~~lpp~sl~l~r~miq~e~~~~sc~l~~~r~~yd~a~~~fg~d 529 (568)
T KOG2396|consen 452 LS--VIGADSVTLKSKYLDWAYESGGYKKARKVYKSLQELPPFSLDLFRKMIQFEKEQESCNLANIREYYDRALREFGAD 529 (568)
T ss_pred HH--hcCCceeehhHHHHHHHHHhcchHHHHHHHHHHHhCCCccHHHHHHHHHHHhhHhhcCchHHHHHHHHHHHHhCCC
Confidence 22 2334433 34567888889999999999988765 345677777777542 23334788888999888643377
Q ss_pred CchHHHHHHHHHhcCCcHHHHHHHHHHHh
Q 007573 507 SAVYVMLSNLYAAAGMWRDVTRVRLLMKE 535 (597)
Q Consensus 507 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 535 (597)
+..|......-...|..+.+-.++.+..+
T Consensus 530 ~~lw~~y~~~e~~~g~~en~~~~~~ra~k 558 (568)
T KOG2396|consen 530 SDLWMDYMKEELPLGRPENCGQIYWRAMK 558 (568)
T ss_pred hHHHHHHHHhhccCCCcccccHHHHHHHH
Confidence 88888777777788888888887776654
No 360
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=77.22 E-value=21 Score=35.39 Aligned_cols=100 Identities=17% Similarity=0.197 Sum_probs=51.1
Q ss_pred HHHcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHH
Q 007573 380 FAQHGHYEKALIFFSQMGLNGFDPDGITFLSLLSACGHAGKVNESMDLFELMVKVYGIIPSSEHYTCLVDILSRAGQLEK 459 (597)
Q Consensus 380 ~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~ 459 (597)
+...|+++.+...+...... +.....+..++++..-+.|++++|...-+-|... .+ .+++....-...--..|-+++
T Consensus 333 ~~~lg~ye~~~~~~s~~~~~-~~s~~~~~~~~~r~~~~l~r~~~a~s~a~~~l~~-ei-e~~ei~~iaa~sa~~l~~~d~ 409 (831)
T PRK15180 333 FSHLGYYEQAYQDISDVEKI-IGTTDSTLRCRLRSLHGLARWREALSTAEMMLSN-EI-EDEEVLTVAAGSADALQLFDK 409 (831)
T ss_pred HHHhhhHHHHHHHhhchhhh-hcCCchHHHHHHHhhhchhhHHHHHHHHHHHhcc-cc-CChhheeeecccHHHHhHHHH
Confidence 34456677776666554321 2344556666666666667777776666655542 22 223332222222334455666
Q ss_pred HHHHHhhCC--CCCCHHHHHHHHHH
Q 007573 460 AWQITQGMP--FEADTGVWGSLLAA 482 (597)
Q Consensus 460 A~~~~~~~~--~~p~~~~~~~l~~~ 482 (597)
+.-.+++.. .+|...-|..+++.
T Consensus 410 ~~~~wk~~~~~~~~~~~g~v~~~~~ 434 (831)
T PRK15180 410 SYHYWKRVLLLNPETQSGWVNFLSS 434 (831)
T ss_pred HHHHHHHHhccCChhcccceeeecc
Confidence 666666543 33333444444443
No 361
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=77.08 E-value=87 Score=31.66 Aligned_cols=101 Identities=12% Similarity=0.110 Sum_probs=68.5
Q ss_pred CCChHHH-HHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChHHHHHHHHHH---hhcCCHHHHHHHHhhCC--CCCCHHH
Q 007573 402 DPDGITF-LSLLSACGHAGKVNESMDLFELMVKVYGIIPSSEHYTCLVDIL---SRAGQLEKAWQITQGMP--FEADTGV 475 (597)
Q Consensus 402 ~p~~~~~-~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~---~~~g~~~~A~~~~~~~~--~~p~~~~ 475 (597)
.|+..|+ +.++.-+.+.|-..+|..++..+.. --+|+...|..++..- ..+| +.-+.++++.+. ...|+..
T Consensus 456 ~~~~~tl~s~~l~~~~e~~~~~~ark~y~~l~~--lpp~sl~l~r~miq~e~~~~sc~-l~~~r~~yd~a~~~fg~d~~l 532 (568)
T KOG2396|consen 456 GADSVTLKSKYLDWAYESGGYKKARKVYKSLQE--LPPFSLDLFRKMIQFEKEQESCN-LANIREYYDRALREFGADSDL 532 (568)
T ss_pred CCceeehhHHHHHHHHHhcchHHHHHHHHHHHh--CCCccHHHHHHHHHHHhhHhhcC-chHHHHHHHHHHHHhCCChHH
Confidence 5555544 3455666677778888888887764 3455667777776543 2333 667777777775 5577888
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHh-cCCC
Q 007573 476 WGSLLAACVINLNVELGELAAKKMRE-LDPQ 505 (597)
Q Consensus 476 ~~~l~~~~~~~g~~~~a~~~~~~~~~-~~p~ 505 (597)
|...+.--...|..+.+-.++.++++ ++|.
T Consensus 533 w~~y~~~e~~~g~~en~~~~~~ra~ktl~~~ 563 (568)
T KOG2396|consen 533 WMDYMKEELPLGRPENCGQIYWRAMKTLQGE 563 (568)
T ss_pred HHHHHHhhccCCCcccccHHHHHHHHhhChh
Confidence 88877777788888888888777765 4444
No 362
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=76.90 E-value=1e+02 Score=32.45 Aligned_cols=79 Identities=11% Similarity=0.038 Sum_probs=46.8
Q ss_pred CHHHHHHHHhhCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcC---CcHHHHH
Q 007573 456 QLEKAWQITQGMPFEADTGVWGSLLAACVI----NLNVELGELAAKKMRELDPQNSAVYVMLSNLYAAAG---MWRDVTR 528 (597)
Q Consensus 456 ~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g---~~~~A~~ 528 (597)
+.+.+...+.+...+-+......|...|.. ..+++.|...+.++.+.+ ......++..+...- .+..|.+
T Consensus 454 ~~~~~~~~~~~a~~~g~~~a~~~lgd~y~~g~g~~~d~~~a~~~y~~a~~~~---~~~~~nlg~~~e~g~g~~~~~~a~~ 530 (552)
T KOG1550|consen 454 TLERAFSLYSRAAAQGNADAILKLGDYYYYGLGTGRDPEKAAAQYARASEQG---AQALFNLGYMHEHGEGIKVLHLAKR 530 (552)
T ss_pred chhHHHHHHHHHHhccCHHHHhhhcceeeecCCCCCChHHHHHHHHHHHHhh---hHHHhhhhhHHhcCcCcchhHHHHH
Confidence 444555555555434445555555554332 236788888888877766 666667777665421 1567888
Q ss_pred HHHHHHhCC
Q 007573 529 VRLLMKEQG 537 (597)
Q Consensus 529 ~~~~~~~~~ 537 (597)
+++...+.+
T Consensus 531 ~~~~~~~~~ 539 (552)
T KOG1550|consen 531 YYDQASEED 539 (552)
T ss_pred HHHHHHhcC
Confidence 887766533
No 363
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=76.69 E-value=27 Score=30.60 Aligned_cols=73 Identities=15% Similarity=0.064 Sum_probs=29.3
Q ss_pred HHHHHHHHHHHHCCCCCChHHHHHHHHHHhccCcHHHHHHHHHHhHHhcC--CCCChHHHHHHHHHHhhcCCHHHH
Q 007573 387 EKALIFFSQMGLNGFDPDGITFLSLLSACGHAGKVNESMDLFELMVKVYG--IIPSSEHYTCLVDILSRAGQLEKA 460 (597)
Q Consensus 387 ~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~--~~p~~~~~~~l~~~~~~~g~~~~A 460 (597)
++|.+.|-++...+.--++.....+...| ...+.+++.+++....+.++ -.+|++.+..|+..+.+.|+++.|
T Consensus 123 ~~A~~~fL~~E~~~~l~t~elq~aLAtyY-~krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~A 197 (203)
T PF11207_consen 123 QEALRRFLQLEGTPELETAELQYALATYY-TKRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQA 197 (203)
T ss_pred HHHHHHHHHHcCCCCCCCHHHHHHHHHHH-HccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhh
Confidence 44444444444443222222222222222 23444555554444443211 123344444444444444444443
No 364
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=76.48 E-value=5.7 Score=28.50 Aligned_cols=45 Identities=13% Similarity=0.016 Sum_probs=33.5
Q ss_pred hcCCHHHHHHHHHHHHhcCCCCC---chHHHHHHHHHhcCCcHHHHHH
Q 007573 485 INLNVELGELAAKKMRELDPQNS---AVYVMLSNLYAAAGMWRDVTRV 529 (597)
Q Consensus 485 ~~g~~~~a~~~~~~~~~~~p~~~---~~~~~l~~~~~~~g~~~~A~~~ 529 (597)
...+.++|+..++++++..++++ .++..+..+|+..|++.+++++
T Consensus 18 ~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~f 65 (80)
T PF10579_consen 18 HQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAF 65 (80)
T ss_pred ccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56677888888888888766654 4445666778888888887765
No 365
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=75.79 E-value=1.2 Score=37.08 Aligned_cols=82 Identities=13% Similarity=0.197 Sum_probs=44.8
Q ss_pred HHHHhccchhHHHHHHHHHHHHhCCCCcccHHHHHHHHHHhcCCHHHHHHHHhccCCCChhhHHHHHHHHHHcCCHHHHH
Q 007573 311 FTACSALQLLNEGRQSHVLVIRNGFEANVSVCNAVITMYSRCGGILDSELAFRQIHSPNLVSWNTIIAAFAQHGHYEKAL 390 (597)
Q Consensus 311 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 390 (597)
+..+...+.+.....+++.+.+.+...+....+.++..|++.++.++..++++.... .-...++..|.+.|.+++|.
T Consensus 14 i~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~~~~---yd~~~~~~~c~~~~l~~~a~ 90 (143)
T PF00637_consen 14 ISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKTSNN---YDLDKALRLCEKHGLYEEAV 90 (143)
T ss_dssp HHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTSSSS---S-CTHHHHHHHTTTSHHHHH
T ss_pred HHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcccccc---cCHHHHHHHHHhcchHHHHH
Confidence 444445555555666666666555455566677777777777666666666663322 22233444455555555555
Q ss_pred HHHHH
Q 007573 391 IFFSQ 395 (597)
Q Consensus 391 ~~~~~ 395 (597)
-++.+
T Consensus 91 ~Ly~~ 95 (143)
T PF00637_consen 91 YLYSK 95 (143)
T ss_dssp HHHHC
T ss_pred HHHHH
Confidence 55444
No 366
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=75.48 E-value=33 Score=26.05 Aligned_cols=61 Identities=16% Similarity=0.223 Sum_probs=44.2
Q ss_pred HHHHHhcCCHHHHHHHHhccCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCChHHHH
Q 007573 346 ITMYSRCGGILDSELAFRQIHSPNLVSWNTIIAAFAQHGHYEKALIFFSQMGLNGFDPDGITFL 409 (597)
Q Consensus 346 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~ 409 (597)
+..+...|++++|..+.+....||...|-++-. .+.|-.+++..-+.+|..+| .|....|.
T Consensus 46 lsSLmNrG~Yq~Al~l~~~~~~pdlepw~ALce--~rlGl~s~l~~rl~rla~sg-~p~lq~Fa 106 (115)
T TIGR02508 46 LSSLMNRGDYQSALQLGNKLCYPDLEPWLALCE--WRLGLGSALESRLNRLAASG-DPRLQTFV 106 (115)
T ss_pred HHHHHccchHHHHHHhcCCCCCchHHHHHHHHH--HhhccHHHHHHHHHHHHhCC-CHHHHHHH
Confidence 345566788888888888888888888877754 35677777777777777766 55555554
No 367
>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]
Probab=75.01 E-value=37 Score=32.02 Aligned_cols=20 Identities=15% Similarity=0.140 Sum_probs=14.7
Q ss_pred HHHHHHHHHHhcCCCCCchH
Q 007573 491 LGELAAKKMRELDPQNSAVY 510 (597)
Q Consensus 491 ~a~~~~~~~~~~~p~~~~~~ 510 (597)
.|++...++.+.+|.-|..+
T Consensus 380 ~AvEAihRAvEFNPHVPkYL 399 (556)
T KOG3807|consen 380 NAVEAIHRAVEFNPHVPKYL 399 (556)
T ss_pred HHHHHHHHHhhcCCCCcHHH
Confidence 47778888888888765533
No 368
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=74.97 E-value=27 Score=26.61 Aligned_cols=46 Identities=11% Similarity=0.170 Sum_probs=31.5
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHH
Q 007573 469 FEADTGVWGSLLAACVINLNVELGELAAKKMRELDPQNSAVYVMLS 514 (597)
Q Consensus 469 ~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~ 514 (597)
.-|++.+..+.+.+|.+.+|+..|+++++-+...-.+....|..++
T Consensus 41 lVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K~~~~~~~Y~~~l 86 (108)
T PF02284_consen 41 LVPEPKIIEAALRACRRVNDFALAVRILEGIKDKCGNKKEIYPYIL 86 (108)
T ss_dssp B---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHTTT-TTHHHHHH
T ss_pred cCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHHccChHHHHHHHH
Confidence 5688889999999999999999999999888765444343555543
No 369
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=74.60 E-value=13 Score=32.77 Aligned_cols=72 Identities=17% Similarity=0.164 Sum_probs=54.5
Q ss_pred HHHHHHHHhhcCCHHHHHHHHhh-CCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC---CchHHHHHH
Q 007573 444 YTCLVDILSRAGQLEKAWQITQG-MPFEA-DTGVWGSLLAACVINLNVELGELAAKKMRELDPQN---SAVYVMLSN 515 (597)
Q Consensus 444 ~~~l~~~~~~~g~~~~A~~~~~~-~~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~---~~~~~~l~~ 515 (597)
.+.-+..+.+.+.+.+|+...++ +..+| |...-..++..++..|++++|..-++-+-++.|+. ...|..++.
T Consensus 4 l~~t~seLL~~~sL~dai~~a~~qVkakPtda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t~~a~lyr~lir 80 (273)
T COG4455 4 LRDTISELLDDNSLQDAIGLARDQVKAKPTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDTVGASLYRHLIR 80 (273)
T ss_pred hHHHHHHHHHhccHHHHHHHHHHHHhcCCccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccchHHHHHHHHHH
Confidence 34456677888999999988754 44556 55577788899999999999999999999999986 344444443
No 370
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=74.48 E-value=6.1 Score=21.56 Aligned_cols=29 Identities=17% Similarity=0.111 Sum_probs=25.2
Q ss_pred chHHHHHHHHHhcCCcHHHHHHHHHHHhC
Q 007573 508 AVYVMLSNLYAAAGMWRDVTRVRLLMKEQ 536 (597)
Q Consensus 508 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 536 (597)
..+..++..+...|++++|...++...+.
T Consensus 2 ~~~~~~a~~~~~~~~~~~a~~~~~~~~~~ 30 (34)
T smart00028 2 EALYNLGNAYLKLGDYDEALEYYEKALEL 30 (34)
T ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHHHcc
Confidence 46788999999999999999999887653
No 371
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=73.67 E-value=37 Score=25.79 Aligned_cols=60 Identities=13% Similarity=0.131 Sum_probs=41.8
Q ss_pred HHHHHhcCCHHHHHHHHhhcCCCChhHHHHHHHHHHHcCChhHHHHHHHHhHHCCCCCCHHHH
Q 007573 245 ITGFCKVGMLENARLLFERIQPKDCVSFNAMIAGYAQNGVAEEALRLFSGMIKMDMQPDDATL 307 (597)
Q Consensus 245 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~ 307 (597)
+..+...|++++|..+.+...-||...|-.|-. -+.|..+++..-+.+|..+| .|....|
T Consensus 46 lsSLmNrG~Yq~Al~l~~~~~~pdlepw~ALce--~rlGl~s~l~~rl~rla~sg-~p~lq~F 105 (115)
T TIGR02508 46 LSSLMNRGDYQSALQLGNKLCYPDLEPWLALCE--WRLGLGSALESRLNRLAASG-DPRLQTF 105 (115)
T ss_pred HHHHHccchHHHHHHhcCCCCCchHHHHHHHHH--HhhccHHHHHHHHHHHHhCC-CHHHHHH
Confidence 445667888888888888888888888876654 35666677777677777665 4544444
No 372
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=73.15 E-value=1.3e+02 Score=31.76 Aligned_cols=82 Identities=17% Similarity=0.104 Sum_probs=38.7
Q ss_pred CHHHHHHHHhhCCCCCCHHHHHHHHHHHH----hcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCcHHHHHHHH
Q 007573 456 QLEKAWQITQGMPFEADTGVWGSLLAACV----INLNVELGELAAKKMRELDPQNSAVYVMLSNLYAAAGMWRDVTRVRL 531 (597)
Q Consensus 456 ~~~~A~~~~~~~~~~p~~~~~~~l~~~~~----~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~ 531 (597)
+...|.++|......-....+-.+...+. ...+.+.|...+.++-+.++............+.. ++++.+.-.+.
T Consensus 343 d~~~A~~yy~~Aa~~G~~~A~~~la~~y~~G~gv~r~~~~A~~~~k~aA~~g~~~A~~~~~~~~~~g~-~~~~~~~~~~~ 421 (552)
T KOG1550|consen 343 DYRRAFEYYSLAAKAGHILAIYRLALCYELGLGVERNLELAFAYYKKAAEKGNPSAAYLLGAFYEYGV-GRYDTALALYL 421 (552)
T ss_pred cHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCcCCCHHHHHHHHHHHHHccChhhHHHHHHHHHHcc-ccccHHHHHHH
Confidence 45566666655442222222222222211 23366777777777777663221222222233333 66666666666
Q ss_pred HHHhCCC
Q 007573 532 LMKEQGV 538 (597)
Q Consensus 532 ~~~~~~~ 538 (597)
.+.+.|.
T Consensus 422 ~~a~~g~ 428 (552)
T KOG1550|consen 422 YLAELGY 428 (552)
T ss_pred HHHHhhh
Confidence 6655443
No 373
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=72.98 E-value=1.4e+02 Score=32.02 Aligned_cols=40 Identities=20% Similarity=0.297 Sum_probs=26.4
Q ss_pred HHHHHHHcCCChHHHHHHHccCC---CCCchhHHHHHHHHHhC
Q 007573 148 AMISGFLKHGRLEEATRLFEQMP---RRNVISYTAMLDGFMKK 187 (597)
Q Consensus 148 ~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~ 187 (597)
++|-.|.|+|++++|.++..+.. +.....+...+..|...
T Consensus 116 a~Iyy~LR~G~~~~A~~~~~~~~~~~~~~~~~f~~~l~~~~~s 158 (613)
T PF04097_consen 116 ALIYYCLRCGDYDEALEVANENRNQFQKIERSFPTYLKAYASS 158 (613)
T ss_dssp HHHHHHHTTT-HHHHHHHHHHTGGGS-TTTTHHHHHHHHCTTT
T ss_pred HHHHHHHhcCCHHHHHHHHHHhhhhhcchhHHHHHHHHHHHhC
Confidence 46777888999999988883332 23445666777777665
No 374
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=72.88 E-value=59 Score=27.71 Aligned_cols=37 Identities=14% Similarity=0.270 Sum_probs=19.6
Q ss_pred CCchhHHHHHHHHHhCCChhHHHHHHHhcccCCcchH
Q 007573 172 RNVISYTAMLDGFMKKGEVDKARALSDYMSFKNVVSW 208 (597)
Q Consensus 172 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~ 208 (597)
++...+..+++.+.+.|++.....++..-+-+|....
T Consensus 27 ~~~~L~~lli~lLi~~~~~~~L~qllq~~Vi~DSk~l 63 (167)
T PF07035_consen 27 VQHELYELLIDLLIRNGQFSQLHQLLQYHVIPDSKPL 63 (167)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHhhcccCCcHHH
Confidence 4445555666666666665555555544444444333
No 375
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=72.84 E-value=1.4e+02 Score=32.00 Aligned_cols=18 Identities=22% Similarity=0.202 Sum_probs=8.6
Q ss_pred HHHHHHcCCChHHHHHHH
Q 007573 211 MITGYVKNERFCEARELF 228 (597)
Q Consensus 211 ll~~~~~~g~~~~a~~~~ 228 (597)
++-.|.+.|++++|.++.
T Consensus 117 ~Iyy~LR~G~~~~A~~~~ 134 (613)
T PF04097_consen 117 LIYYCLRCGDYDEALEVA 134 (613)
T ss_dssp HHHHHHTTT-HHHHHHHH
T ss_pred HHHHHHhcCCHHHHHHHH
Confidence 344444555555555555
No 376
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=72.58 E-value=31 Score=26.03 Aligned_cols=47 Identities=13% Similarity=0.188 Sum_probs=34.4
Q ss_pred hhHHHHHHHHhHHCCCCCCHHHHHHHHHHHhccchhHHHHHHHHHHH
Q 007573 285 AEEALRLFSGMIKMDMQPDDATLVSVFTACSALQLLNEGRQSHVLVI 331 (597)
Q Consensus 285 ~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 331 (597)
.-++.+-++.+....+.|+.....+.+.+|.+.+++..|.++++-+.
T Consensus 23 ~we~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK 69 (103)
T cd00923 23 GWELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIK 69 (103)
T ss_pred HHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 34555666666666778888888888888888888888888777665
No 377
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=72.24 E-value=10 Score=27.30 Aligned_cols=47 Identities=6% Similarity=0.079 Sum_probs=27.0
Q ss_pred ccCcHHHHHHHHHHhHHhcCCCCC-hHHHHHHHHHHhhcCCHHHHHHH
Q 007573 417 HAGKVNESMDLFELMVKVYGIIPS-SEHYTCLVDILSRAGQLEKAWQI 463 (597)
Q Consensus 417 ~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~ 463 (597)
.....++|+..|....+...-.|+ -.++..|+.+|...|++.+++++
T Consensus 18 ~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~f 65 (80)
T PF10579_consen 18 HQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAF 65 (80)
T ss_pred ccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455666667776666654322232 23455566666666666666554
No 378
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=72.03 E-value=32 Score=35.26 Aligned_cols=134 Identities=13% Similarity=-0.060 Sum_probs=92.0
Q ss_pred CCChHHHHHHHHHHhcc--CcHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHh-hcCCHHHHHHHHhhCC-CCCC--HHH
Q 007573 402 DPDGITFLSLLSACGHA--GKVNESMDLFELMVKVYGIIPSSEHYTCLVDILS-RAGQLEKAWQITQGMP-FEAD--TGV 475 (597)
Q Consensus 402 ~p~~~~~~~ll~~~~~~--g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~-~~g~~~~A~~~~~~~~-~~p~--~~~ 475 (597)
.|+..+..+++.-...- ...+-|-.++..|.+ .+.|--...+ +...|. -.|+...|.+.+.... .+|. .+.
T Consensus 568 ~~~~~~~k~~~~r~~~~~i~e~e~~~~~~~~~~~--~~~p~w~~ln-~aglywr~~gn~~~a~~cl~~a~~~~p~~~~v~ 644 (886)
T KOG4507|consen 568 MPDDHARKILLSRINNYTIPEEEIGSFLFHAINK--PNAPIWLILN-EAGLYWRAVGNSTFAIACLQRALNLAPLQQDVP 644 (886)
T ss_pred CchHHHHHHHHHHHhcccCcHHHHHHHHHHHhcC--CCCCeEEEee-cccceeeecCCcHHHHHHHHHHhccChhhhccc
Confidence 46666666555443322 223444555555532 4445433333 334454 4689999999887654 4453 234
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCcHHHHHHHHHHHhCCC
Q 007573 476 WGSLLAACVINLNVELGELAAKKMRELDPQNSAVYVMLSNLYAAAGMWRDVTRVRLLMKEQGV 538 (597)
Q Consensus 476 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 538 (597)
...|.....+.|-.-.|-.++.+.+.+....|-++..++++|....+++.|++-++...++..
T Consensus 645 ~v~la~~~~~~~~~~da~~~l~q~l~~~~sepl~~~~~g~~~l~l~~i~~a~~~~~~a~~~~~ 707 (886)
T KOG4507|consen 645 LVNLANLLIHYGLHLDATKLLLQALAINSSEPLTFLSLGNAYLALKNISGALEAFRQALKLTT 707 (886)
T ss_pred HHHHHHHHHHhhhhccHHHHHHHHHhhcccCchHHHhcchhHHHHhhhHHHHHHHHHHHhcCC
Confidence 556777777888888899999999999877789999999999999999999999999877543
No 379
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=71.68 E-value=9 Score=21.46 Aligned_cols=30 Identities=10% Similarity=0.173 Sum_probs=22.5
Q ss_pred CCHHHHHHHHHHHHhcCCCCCchHHHHHHH
Q 007573 487 LNVELGELAAKKMRELDPQNSAVYVMLSNL 516 (597)
Q Consensus 487 g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 516 (597)
|+.+.+..+|+++++..|.++..+...+..
T Consensus 1 ~~~~~~r~i~e~~l~~~~~~~~~W~~y~~~ 30 (33)
T smart00386 1 GDIERARKIYERALEKFPKSVELWLKYAEF 30 (33)
T ss_pred CcHHHHHHHHHHHHHHCCCChHHHHHHHHH
Confidence 467888888888888888777777665543
No 380
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=70.98 E-value=77 Score=28.25 Aligned_cols=123 Identities=17% Similarity=0.184 Sum_probs=73.2
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCC----hHHHHHHH
Q 007573 373 WNTIIAAFAQHGHYEKALIFFSQMGLNGFDPDGITFLSLLSACGHAGKVNESMDLFELMVKVYGIIPS----SEHYTCLV 448 (597)
Q Consensus 373 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~----~~~~~~l~ 448 (597)
.+..++.+.+.+...+++...++-++.. +.|..+-..++..++-.|++++|..-++...+ +.|+ ...|..++
T Consensus 4 l~~t~seLL~~~sL~dai~~a~~qVkak-Ptda~~RhflfqLlcvaGdw~kAl~Ql~l~a~---l~p~~t~~a~lyr~li 79 (273)
T COG4455 4 LRDTISELLDDNSLQDAIGLARDQVKAK-PTDAGGRHFLFQLLCVAGDWEKALAQLNLAAT---LSPQDTVGASLYRHLI 79 (273)
T ss_pred hHHHHHHHHHhccHHHHHHHHHHHHhcC-CccccchhHHHHHHhhcchHHHHHHHHHHHhh---cCcccchHHHHHHHHH
Confidence 3455667778888899998888777653 44555667778888899999999877776543 3333 45565555
Q ss_pred HHHhhcCCHHHHHH-HHhh--CC--CCCCHHHHHH-HHHHH--HhcCCHHHHHHHHHHHHhcCCCC
Q 007573 449 DILSRAGQLEKAWQ-ITQG--MP--FEADTGVWGS-LLAAC--VINLNVELGELAAKKMRELDPQN 506 (597)
Q Consensus 449 ~~~~~~g~~~~A~~-~~~~--~~--~~p~~~~~~~-l~~~~--~~~g~~~~a~~~~~~~~~~~p~~ 506 (597)
.. +.+.. +|.. .+ .-.....|.. |..+. ...|.-+.+..+-+.+++..|..
T Consensus 80 r~-------ea~R~evfag~~~Pgflg~p~p~wva~L~aala~h~dg~gea~~alreqal~aa~~~ 138 (273)
T COG4455 80 RC-------EAARNEVFAGGAVPGFLGGPSPEWVAALLAALALHSDGAGEARTALREQALKAAPVP 138 (273)
T ss_pred HH-------HHHHHHHhccCCCCCCcCCCCHHHHHHHHHHHhcccCCcchHHHHHHHHHHhhCCCC
Confidence 43 33322 3432 12 1112334443 33332 23345555666667777777664
No 381
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=70.91 E-value=52 Score=30.44 Aligned_cols=89 Identities=11% Similarity=0.084 Sum_probs=47.9
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChHHHHHHHHHH-----
Q 007573 377 IAAFAQHGHYEKALIFFSQMGLNGFDPDGITFLSLLSACGHAGKVNESMDLFELMVKVYGIIPSSEHYTCLVDIL----- 451 (597)
Q Consensus 377 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~----- 451 (597)
|.+++..|++.+++...-+--+.--+.-+.....-|-.|++.+.+..+.++-....+. .-.-+..-|.++++.|
T Consensus 90 IQALAEmnrWreVLsWvlqyYq~pEklPpkIleLCILLysKv~Ep~amlev~~~WL~~-p~Nq~lp~y~~vaELyLl~VL 168 (309)
T PF07163_consen 90 IQALAEMNRWREVLSWVLQYYQVPEKLPPKILELCILLYSKVQEPAAMLEVASAWLQD-PSNQSLPEYGTVAELYLLHVL 168 (309)
T ss_pred HHHHHHHhhHHHHHHHHHHHhcCcccCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhC-cccCCchhhHHHHHHHHHHHH
Confidence 5666666777776665544332211112233344444566777777766666665543 2222233355555544
Q ss_pred hhcCCHHHHHHHHhh
Q 007573 452 SRAGQLEKAWQITQG 466 (597)
Q Consensus 452 ~~~g~~~~A~~~~~~ 466 (597)
.=.|.+++|+++...
T Consensus 169 lPLG~~~eAeelv~g 183 (309)
T PF07163_consen 169 LPLGHFSEAEELVVG 183 (309)
T ss_pred hccccHHHHHHHHhc
Confidence 345778888777643
No 382
>PF13934 ELYS: Nuclear pore complex assembly
Probab=70.15 E-value=71 Score=28.94 Aligned_cols=103 Identities=11% Similarity=0.157 Sum_probs=67.6
Q ss_pred HHHHHHHHH--hcCChHHHHHHHhhcCCCCcchHHHHHHHHHhCCChhHHHHHHhhCCCC--CcchHHHHHHHHHcCCCh
Q 007573 53 NNAKISALS--RAGKISAARQLFDQMTTKDVITWNAIITGYWQNGFLQESKNLFQSMPVK--NIVSWNCMIAGCIDNDRI 128 (597)
Q Consensus 53 ~~~l~~~~~--~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~ll~~~~~~~~~ 128 (597)
+...++++. ..++++.|...+-....+ ..-...++.++..+|+...|+.+++.+..+ +......++.. ..++.+
T Consensus 79 ~~~~~~g~W~LD~~~~~~A~~~L~~ps~~-~~~~~~Il~~L~~~~~~~lAL~y~~~~~p~l~s~~~~~~~~~~-La~~~v 156 (226)
T PF13934_consen 79 YIKFIQGFWLLDHGDFEEALELLSHPSLI-PWFPDKILQALLRRGDPKLALRYLRAVGPPLSSPEALTLYFVA-LANGLV 156 (226)
T ss_pred HHHHHHHHHHhChHhHHHHHHHhCCCCCC-cccHHHHHHHHHHCCChhHHHHHHHhcCCCCCCHHHHHHHHHH-HHcCCH
Confidence 344455553 457777777776433221 112346888999999999999999998765 44444555555 667899
Q ss_pred HHHHHHHccCCCCC-hhhHHHHHHHHHcCC
Q 007573 129 DDAFDYFQAMPERN-TATYNAMISGFLKHG 157 (597)
Q Consensus 129 ~~A~~~~~~~~~~~-~~~~~~l~~~~~~~g 157 (597)
.+|...-+....+. ...+..++..+....
T Consensus 157 ~EAf~~~R~~~~~~~~~l~e~l~~~~~~~~ 186 (226)
T PF13934_consen 157 TEAFSFQRSYPDELRRRLFEQLLEHCLEEC 186 (226)
T ss_pred HHHHHHHHhCchhhhHHHHHHHHHHHHHHh
Confidence 99999888776532 456666776666433
No 383
>PRK10941 hypothetical protein; Provisional
Probab=70.11 E-value=23 Score=33.05 Aligned_cols=66 Identities=14% Similarity=0.023 Sum_probs=52.8
Q ss_pred HHHHHHHHhhcCCHHHHHHHHhhCC-CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCch
Q 007573 444 YTCLVDILSRAGQLEKAWQITQGMP-FEA-DTGVWGSLLAACVINLNVELGELAAKKMRELDPQNSAV 509 (597)
Q Consensus 444 ~~~l~~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~ 509 (597)
.+.+-.+|.+.++++.|.++.+.+. ..| ++.-+.--+-.|.+.|.+..|..-++..++.-|+++.+
T Consensus 184 l~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~a 251 (269)
T PRK10941 184 LDTLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPIS 251 (269)
T ss_pred HHHHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchhH
Confidence 3456677888999999999988876 455 45567777777899999999999999999999988764
No 384
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=70.06 E-value=1.8e+02 Score=32.22 Aligned_cols=27 Identities=30% Similarity=0.634 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHhHH
Q 007573 271 SFNAMIAGYAQNGVAEEALRLFSGMIK 297 (597)
Q Consensus 271 ~~~~li~~~~~~g~~~~A~~~~~~m~~ 297 (597)
-|..|+..|...|.+++|++++.+...
T Consensus 506 ~y~~Li~LY~~kg~h~~AL~ll~~l~d 532 (877)
T KOG2063|consen 506 KYRELIELYATKGMHEKALQLLRDLVD 532 (877)
T ss_pred cHHHHHHHHHhccchHHHHHHHHHHhc
Confidence 488899999999999999999998876
No 385
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=69.20 E-value=1.7e+02 Score=31.42 Aligned_cols=48 Identities=17% Similarity=0.123 Sum_probs=35.6
Q ss_pred HhcCCHHHHHHHHHHHHhcC---CC------CCchHHHHHHHHHhcCCcHHHHHHHH
Q 007573 484 VINLNVELGELAAKKMRELD---PQ------NSAVYVMLSNLYAAAGMWRDVTRVRL 531 (597)
Q Consensus 484 ~~~g~~~~a~~~~~~~~~~~---p~------~~~~~~~l~~~~~~~g~~~~A~~~~~ 531 (597)
...+++..|....+.+.+.. |. .+..+...|-.+...|+.+.|...|.
T Consensus 372 ~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~yL~gl~~q~~g~l~~A~~~y~ 428 (608)
T PF10345_consen 372 FIRGDWSKATQELEFMRQLCQRSPSKLYESLYPLLHYLLGLYYQSTGDLEAALYQYQ 428 (608)
T ss_pred HHCcCHHHHHHHHHHHHHHHhcCccchhhhhhHHHHHHHHHHHHHcCCHHHHHHHHh
Confidence 46788988999998887642 22 14445566666777899999999997
No 386
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=69.00 E-value=27 Score=33.07 Aligned_cols=92 Identities=10% Similarity=-0.037 Sum_probs=73.3
Q ss_pred HHHHHHHHHhhcCCHHHHHHHHhhCC----CCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHH
Q 007573 443 HYTCLVDILSRAGQLEKAWQITQGMP----FEAD--TGVWGSLLAACVINLNVELGELAAKKMRELDPQNSAVYVMLSNL 516 (597)
Q Consensus 443 ~~~~l~~~~~~~g~~~~A~~~~~~~~----~~p~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 516 (597)
+|.-=.+-|.+..++..|...|.+-. ..|| .+.|+.-..+-...|++..|+.-..+++..+|.+..+|..-+.+
T Consensus 83 n~KeeGN~~fK~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~~P~h~Ka~~R~Akc 162 (390)
T KOG0551|consen 83 NYKEEGNEYFKEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKLKPTHLKAYIRGAKC 162 (390)
T ss_pred HHHHHhHHHHHhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhhhhhhHH
Confidence 34444566888899999999987654 3344 45677777777788999999999999999999999999999999
Q ss_pred HHhcCCcHHHHHHHHHHH
Q 007573 517 YAAAGMWRDVTRVRLLMK 534 (597)
Q Consensus 517 ~~~~g~~~~A~~~~~~~~ 534 (597)
+....++++|....++..
T Consensus 163 ~~eLe~~~~a~nw~ee~~ 180 (390)
T KOG0551|consen 163 LLELERFAEAVNWCEEGL 180 (390)
T ss_pred HHHHHHHHHHHHHHhhhh
Confidence 999999888887766653
No 387
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=68.85 E-value=1e+02 Score=28.94 Aligned_cols=61 Identities=18% Similarity=0.155 Sum_probs=34.2
Q ss_pred hHHHHHHHHHHcCCH---HHHHHHHHHHHHCCCCCC-hHHHHHHHHHHhccCcHHHHHHHHHHhHHh
Q 007573 372 SWNTIIAAFAQHGHY---EKALIFFSQMGLNGFDPD-GITFLSLLSACGHAGKVNESMDLFELMVKV 434 (597)
Q Consensus 372 ~~~~li~~~~~~g~~---~~A~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 434 (597)
+...++.+|...+.. ++|..+++.+... .|+ +..+..-+..+.+.++.+++.+++..|+..
T Consensus 86 iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e--~~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~ 150 (278)
T PF08631_consen 86 ILRLLANAYLEWDTYESVEKALNALRLLESE--YGNKPEVFLLKLEILLKSFDEEEYEEILMRMIRS 150 (278)
T ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHHHHHh--CCCCcHHHHHHHHHHhccCChhHHHHHHHHHHHh
Confidence 444555566555543 3455555555433 222 344444555666667777777777777764
No 388
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=68.73 E-value=13 Score=23.41 Aligned_cols=25 Identities=24% Similarity=0.329 Sum_probs=17.1
Q ss_pred HHHHHHHcCChhHHHHHHHHhHHCC
Q 007573 275 MIAGYAQNGVAEEALRLFSGMIKMD 299 (597)
Q Consensus 275 li~~~~~~g~~~~A~~~~~~m~~~g 299 (597)
+..+|...|+.+.|.+++++....|
T Consensus 5 LA~ayie~Gd~e~Ar~lL~evl~~~ 29 (44)
T TIGR03504 5 LARAYIEMGDLEGARELLEEVIEEG 29 (44)
T ss_pred HHHHHHHcCChHHHHHHHHHHHHcC
Confidence 5566777777777777777766543
No 389
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=68.30 E-value=7.7 Score=34.39 Aligned_cols=57 Identities=19% Similarity=0.214 Sum_probs=42.5
Q ss_pred HHhhcCCHHHHHHHHhhCC-CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC
Q 007573 450 ILSRAGQLEKAWQITQGMP-FEA-DTGVWGSLLAACVINLNVELGELAAKKMRELDPQN 506 (597)
Q Consensus 450 ~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~ 506 (597)
+....|+.+.|.+++.+.. ..| ....|-.+.....+.|+++.|.+.+++.++++|++
T Consensus 4 ~~~~~~D~~aaaely~qal~lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~D 62 (287)
T COG4976 4 MLAESGDAEAAAELYNQALELAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPED 62 (287)
T ss_pred hhcccCChHHHHHHHHHHhhcCchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCCccc
Confidence 3456677777777777765 333 45678888877888888888888888888888764
No 390
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=66.48 E-value=23 Score=26.75 Aligned_cols=53 Identities=9% Similarity=0.007 Sum_probs=38.1
Q ss_pred HHhcCCHHHHHHHHHHHHhcCCCC---------CchHHHHHHHHHhcCCcHHHHHHHHHHHh
Q 007573 483 CVINLNVELGELAAKKMRELDPQN---------SAVYVMLSNLYAAAGMWRDVTRVRLLMKE 535 (597)
Q Consensus 483 ~~~~g~~~~a~~~~~~~~~~~p~~---------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 535 (597)
..+.||+..|.+.+.+........ ..+...++.+....|++++|.+.+++..+
T Consensus 8 ~~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~ 69 (94)
T PF12862_consen 8 ALRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIR 69 (94)
T ss_pred HHHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 446788888877777776542221 23445677888899999999999998875
No 391
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=65.60 E-value=1.2e+02 Score=28.57 Aligned_cols=146 Identities=14% Similarity=0.039 Sum_probs=79.1
Q ss_pred CHHHHHHHHHHHHHCCCCCChHHHHHHHHHHhc----cCcHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhc----C-
Q 007573 385 HYEKALIFFSQMGLNGFDPDGITFLSLLSACGH----AGKVNESMDLFELMVKVYGIIPSSEHYTCLVDILSRA----G- 455 (597)
Q Consensus 385 ~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~----~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~----g- 455 (597)
+..+|.++|+.+.+.|. |... ..+...+.. ..+..+|...++.+.+. |..+.......+...|..- +
T Consensus 92 ~~~~A~~~~~~~a~~g~-~~a~--~~lg~~~~~G~gv~~d~~~A~~~~~~Aa~~-g~~~a~~~~~~l~~~~~~g~~~~~~ 167 (292)
T COG0790 92 DKTKAADWYRCAAADGL-AEAL--FNLGLMYANGRGVPLDLVKALKYYEKAAKL-GNVEAALAMYRLGLAYLSGLQALAV 167 (292)
T ss_pred cHHHHHHHHHHHhhccc-HHHH--HhHHHHHhcCCCcccCHHHHHHHHHHHHHc-CChhHHHHHHHHHHHHHcChhhhcc
Confidence 45666666666555542 2221 112222222 23667777777777664 4433222233344444332 1
Q ss_pred --CHHHHHHHHhhCCCCCCHHHHHHHHHHHH----hcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcC--------
Q 007573 456 --QLEKAWQITQGMPFEADTGVWGSLLAACV----INLNVELGELAAKKMRELDPQNSAVYVMLSNLYAAAG-------- 521 (597)
Q Consensus 456 --~~~~A~~~~~~~~~~p~~~~~~~l~~~~~----~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g-------- 521 (597)
+...|...+.++-..-+......|...|. ...+.++|...|.++-+.+. ......++ .+...|
T Consensus 168 ~~~~~~A~~~~~~aa~~~~~~a~~~lg~~y~~G~Gv~~d~~~A~~wy~~Aa~~g~--~~a~~~~~-~~~~~g~g~~~~~~ 244 (292)
T COG0790 168 AYDDKKALYLYRKAAELGNPDAQLLLGRMYEKGLGVPRDLKKAFRWYKKAAEQGD--GAACYNLG-LMYLNGEGVKKAAF 244 (292)
T ss_pred cHHHHhHHHHHHHHHHhcCHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCCC--HHHHHHHH-HHHhcCCCchhhhh
Confidence 22356666666542334444444444442 23478899999999988877 55555566 555555
Q ss_pred -------CcHHHHHHHHHHHhCC
Q 007573 522 -------MWRDVTRVRLLMKEQG 537 (597)
Q Consensus 522 -------~~~~A~~~~~~~~~~~ 537 (597)
+...|...+......+
T Consensus 245 ~~~~~~~~~~~a~~~~~~~~~~~ 267 (292)
T COG0790 245 LTAAKEEDKKQALEWLQKACELG 267 (292)
T ss_pred cccccCCCHHHHHHHHHHHHHcC
Confidence 6666777776666554
No 392
>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [].; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.
Probab=65.23 E-value=27 Score=20.79 Aligned_cols=30 Identities=10% Similarity=-0.187 Sum_probs=15.6
Q ss_pred HHHHHHHHHhcCCHHHHHHH--HHHHHhcCCC
Q 007573 476 WGSLLAACVINLNVELGELA--AKKMRELDPQ 505 (597)
Q Consensus 476 ~~~l~~~~~~~g~~~~a~~~--~~~~~~~~p~ 505 (597)
|-.+...+...|++++|+.+ ++-+..++|.
T Consensus 4 ~y~~a~~~y~~~ky~~A~~~~~y~~l~~ld~~ 35 (36)
T PF07720_consen 4 LYGLAYNFYQKGKYDEAIHFFQYAFLCALDKY 35 (36)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHhccc
Confidence 34445555566666666666 3355554443
No 393
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=65.20 E-value=1.4e+02 Score=29.62 Aligned_cols=54 Identities=11% Similarity=0.135 Sum_probs=34.8
Q ss_pred HHHHcCCHHHHHHHHHHHHHCCCCCChH--HHHHHHHHHh--ccCcHHHHHHHHHHhHH
Q 007573 379 AFAQHGHYEKALIFFSQMGLNGFDPDGI--TFLSLLSACG--HAGKVNESMDLFELMVK 433 (597)
Q Consensus 379 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~--~~~~ll~~~~--~~g~~~~a~~~~~~~~~ 433 (597)
.+...+++..|.++|+.+... ++++.. .+..+..+|. ..-++++|.+.++....
T Consensus 140 ~l~n~~~y~aA~~~l~~l~~r-l~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~ 197 (379)
T PF09670_consen 140 ELFNRYDYGAAARILEELLRR-LPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLK 197 (379)
T ss_pred HHHhcCCHHHHHHHHHHHHHh-CCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 344678888888888888775 455444 3344444443 45677788888877655
No 394
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=63.97 E-value=29 Score=30.52 Aligned_cols=35 Identities=20% Similarity=0.168 Sum_probs=18.7
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC
Q 007573 470 EADTGVWGSLLAACVINLNVELGELAAKKMRELDP 504 (597)
Q Consensus 470 ~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p 504 (597)
.|++.++..++.++...|+.++|.+..+++...-|
T Consensus 141 ~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~lyP 175 (193)
T PF11846_consen 141 RPDPNVYQRYALALALLGDPEEARQWLARARRLYP 175 (193)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 44555555555555555555555555555555555
No 395
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=63.54 E-value=36 Score=27.62 Aligned_cols=65 Identities=18% Similarity=0.143 Sum_probs=35.3
Q ss_pred CCChHHHHHHHHHHhccC---cHHHHHHHHHHhHHhcCCCCC--hHHHHHHHHHHhhcCCHHHHHHHHhhCC
Q 007573 402 DPDGITFLSLLSACGHAG---KVNESMDLFELMVKVYGIIPS--SEHYTCLVDILSRAGQLEKAWQITQGMP 468 (597)
Q Consensus 402 ~p~~~~~~~ll~~~~~~g---~~~~a~~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 468 (597)
.++..+--.+..++.++. ++.+++.+++.+.+. -.|+ .+....|.-++.|.|.++++.++++.+.
T Consensus 29 ~~s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~--~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll 98 (149)
T KOG3364|consen 29 DVSKQSQFNLAWALVRSRDTEDVQEGIVILEDLLKS--AHPERRRECLYYLAVGHYRLKEYSKSLRYVDALL 98 (149)
T ss_pred cchHHHHHHHHHHHHcccchHHHHHhHHHHHHHhhh--cCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHH
Confidence 444444444555555443 455666666666641 1222 3333345556667777777777766544
No 396
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=63.46 E-value=1.3e+02 Score=28.02 Aligned_cols=158 Identities=13% Similarity=0.056 Sum_probs=74.6
Q ss_pred cCCHHHHHHHHhccCCCChhhHHHHHHHHHHcCCHHHHHHHH----HHHHHCCCCCChHHHHHHHHHHhccCcHH-HHHH
Q 007573 352 CGGILDSELAFRQIHSPNLVSWNTIIAAFAQHGHYEKALIFF----SQMGLNGFDPDGITFLSLLSACGHAGKVN-ESMD 426 (597)
Q Consensus 352 ~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~----~~m~~~g~~p~~~~~~~ll~~~~~~g~~~-~a~~ 426 (597)
++++++|.+++..- ...+.++|+..-|.++. +-..+.+.++|......++..+...+.-+ +-.+
T Consensus 3 ~kky~eAidLL~~G-----------a~~ll~~~Q~~sg~DL~~lliev~~~~~~~~~~~~~~rl~~l~~~~~~~~p~r~~ 71 (260)
T PF04190_consen 3 QKKYDEAIDLLYSG-----------ALILLKHGQYGSGADLALLLIEVYEKSEDPVDEESIARLIELISLFPPEEPERKK 71 (260)
T ss_dssp TT-HHHHHHHHHHH-----------HHHHHHTT-HHHHHHHHHHHHHHHHHTT---SHHHHHHHHHHHHHS-TT-TTHHH
T ss_pred cccHHHHHHHHHHH-----------HHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCCcchHHH
Confidence 45566666554322 23345555555444433 33334556666655555554443322111 1111
Q ss_pred HHHHhHH--hcCCC--CChHHHHHHHHHHhhcCCHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 007573 427 LFELMVK--VYGII--PSSEHYTCLVDILSRAGQLEKAWQITQGMPFEADTGVWGSLLAACVINLNVELGELAAKKMREL 502 (597)
Q Consensus 427 ~~~~~~~--~~~~~--p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 502 (597)
+.+.+.+ ..+-. -++.....+...|.+.|++.+|+..|-.-. .|+...+..++.-+...|.
T Consensus 72 fi~~ai~WS~~~~~~~Gdp~LH~~~a~~~~~e~~~~~A~~Hfl~~~-~~~~~~~~~ll~~~~~~~~-------------- 136 (260)
T PF04190_consen 72 FIKAAIKWSKFGSYKFGDPELHHLLAEKLWKEGNYYEAERHFLLGT-DPSAFAYVMLLEEWSTKGY-------------- 136 (260)
T ss_dssp HHHHHHHHHHTSS-TT--HHHHHHHHHHHHHTT-HHHHHHHHHTS--HHHHHHHHHHHHHHHHHTS--------------
T ss_pred HHHHHHHHHccCCCCCCCHHHHHHHHHHHHhhccHHHHHHHHHhcC-ChhHHHHHHHHHHHHHhcC--------------
Confidence 2222211 11222 357788888999999999999998775543 2222222223333333332
Q ss_pred CCCCCchH-HHHHHHHHhcCCcHHHHHHHHHHHhC
Q 007573 503 DPQNSAVY-VMLSNLYAAAGMWRDVTRVRLLMKEQ 536 (597)
Q Consensus 503 ~p~~~~~~-~~l~~~~~~~g~~~~A~~~~~~~~~~ 536 (597)
|.....| ....--|...|+...|...++...++
T Consensus 137 -~~e~dlfi~RaVL~yL~l~n~~~A~~~~~~f~~~ 170 (260)
T PF04190_consen 137 -PSEADLFIARAVLQYLCLGNLRDANELFDTFTSK 170 (260)
T ss_dssp -S--HHHHHHHHHHHHHHTTBHHHHHHHHHHHHHH
T ss_pred -CcchhHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 2222222 23344567788999999988888765
No 397
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=63.14 E-value=86 Score=25.94 Aligned_cols=50 Identities=14% Similarity=0.206 Sum_probs=25.2
Q ss_pred ChhhHHHHHHHHHHcCC-HHHHHHHHHHHHHCCCCCChHHHHHHHHHHhcc
Q 007573 369 NLVSWNTIIAAFAQHGH-YEKALIFFSQMGLNGFDPDGITFLSLLSACGHA 418 (597)
Q Consensus 369 ~~~~~~~li~~~~~~g~-~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~ 418 (597)
+..+|.+++.+..+..- ---+..+|.-|.+.+.++++.-|..++.++.+.
T Consensus 78 ~~ssf~~if~SlsnSsSaK~~~~~Lf~~Lk~~~~~~t~~dy~~li~~~l~g 128 (145)
T PF13762_consen 78 DNSSFHIIFKSLSNSSSAKLTSLTLFNFLKKNDIEFTPSDYSCLIKAALRG 128 (145)
T ss_pred ccchHHHHHHHHccChHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcC
Confidence 33455555555543333 223445555555555555555555555555443
No 398
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=62.98 E-value=98 Score=28.78 Aligned_cols=20 Identities=20% Similarity=0.086 Sum_probs=12.0
Q ss_pred HHHHHHcCChhHHHHHHHHh
Q 007573 276 IAGYAQNGVAEEALRLFSGM 295 (597)
Q Consensus 276 i~~~~~~g~~~~A~~~~~~m 295 (597)
|.+++..++|.+++...-+-
T Consensus 90 IQALAEmnrWreVLsWvlqy 109 (309)
T PF07163_consen 90 IQALAEMNRWREVLSWVLQY 109 (309)
T ss_pred HHHHHHHhhHHHHHHHHHHH
Confidence 56666666666666554443
No 399
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=62.96 E-value=1.4e+02 Score=28.38 Aligned_cols=147 Identities=12% Similarity=0.117 Sum_probs=81.5
Q ss_pred HHHHHHHHHHHHHCCCCCChHHHHHHHHHHhc--cC----cHHHHHHHHHHhHHhcCCC--CChHHHHHHHHHHhhcCCH
Q 007573 386 YEKALIFFSQMGLNGFDPDGITFLSLLSACGH--AG----KVNESMDLFELMVKVYGII--PSSEHYTCLVDILSRAGQL 457 (597)
Q Consensus 386 ~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~--~g----~~~~a~~~~~~~~~~~~~~--p~~~~~~~l~~~~~~~g~~ 457 (597)
+++.+.+++.|.+.|+.-+..+|.+....... .. ....|..+|+.|.+.+.+- ++...+..|+.. ..++.
T Consensus 78 ~~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~~ 155 (297)
T PF13170_consen 78 FKEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSEDV 155 (297)
T ss_pred HHHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhc--ccccH
Confidence 34566788999999998888777664433332 22 3567899999999887654 334444444322 34443
Q ss_pred ----HHHHHHHhhCC----CCCCHH-HHHHHHHHHHhcCC--HHHHHHHHHHHHhcCCCC-CchHHHHHHHHHhcCCcHH
Q 007573 458 ----EKAWQITQGMP----FEADTG-VWGSLLAACVINLN--VELGELAAKKMRELDPQN-SAVYVMLSNLYAAAGMWRD 525 (597)
Q Consensus 458 ----~~A~~~~~~~~----~~p~~~-~~~~l~~~~~~~g~--~~~a~~~~~~~~~~~p~~-~~~~~~l~~~~~~~g~~~~ 525 (597)
++++.+|+.+. .+.|.. ....++..+....+ ..++..+++.+.+.+.+- ...|..+|-+-.-.+..++
T Consensus 156 e~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~~~kik~~~yp~lGlLall~~~~~~ 235 (297)
T PF13170_consen 156 EELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKNGVKIKYMHYPTLGLLALLEDPEEK 235 (297)
T ss_pred HHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCccccccccHHHHHHhcCCchHH
Confidence 34555555543 223333 33333333322222 457778888888776554 3334444444333444425
Q ss_pred HHHHHHHHH
Q 007573 526 VTRVRLLMK 534 (597)
Q Consensus 526 A~~~~~~~~ 534 (597)
..+.+.++.
T Consensus 236 ~~~~i~ev~ 244 (297)
T PF13170_consen 236 IVEEIKEVI 244 (297)
T ss_pred HHHHHHHHH
Confidence 444444443
No 400
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=62.33 E-value=58 Score=26.01 Aligned_cols=59 Identities=12% Similarity=0.130 Sum_probs=42.0
Q ss_pred HHHHHHHHHHHCCCCCChHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChHHHHHHH
Q 007573 388 KALIFFSQMGLNGFDPDGITFLSLLSACGHAGKVNESMDLFELMVKVYGIIPSSEHYTCLV 448 (597)
Q Consensus 388 ~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~ 448 (597)
+..+-++.+..-.+-|++......+++|.+.+++..|.++|+.+.. ...+....|-.++
T Consensus 67 EvrkglN~l~~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK~--K~g~~k~~Y~y~v 125 (149)
T KOG4077|consen 67 EVRKGLNNLFDYDLVPSPKVIEAALRACRRVNDFATAVRILEAIKD--KCGAQKQVYPYYV 125 (149)
T ss_pred HHHHHHHhhhccccCCChHHHHHHHHHHHHhccHHHHHHHHHHHHH--hcccHHHHHHHHH
Confidence 3444455555667788888889999999999999999999887754 3334444565554
No 401
>PF04090 RNA_pol_I_TF: RNA polymerase I specific initiation factor; InterPro: IPR007224 The RNA polymerase I specific transcription initiation factor Rrn11 is a member of a multiprotein complex essential for the initiation of transcription by RNA polymerase I. Binding to the DNA template is dependent on the initial binding of other factors [].
Probab=60.99 E-value=66 Score=28.28 Aligned_cols=90 Identities=10% Similarity=0.063 Sum_probs=54.9
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC-CchHHHHHHHHHhcCCcHHHHHHHHHHHhCCCccCCCeeEEEECCE
Q 007573 474 GVWGSLLAACVINLNVELGELAAKKMRELDPQN-SAVYVMLSNLYAAAGMWRDVTRVRLLMKEQGVTKQCAYSWIEIGNK 552 (597)
Q Consensus 474 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~s~~~~~~~ 552 (597)
.....++..|...||++.|-++|.-+++..+-| ...+..=+..+.+.+.-....+.++.|...-...........-...
T Consensus 42 ~~L~~lLh~~llr~d~~rA~Raf~lLiR~~~VDiR~~W~iG~eIL~~~~~~~~~~~fl~~l~~~y~~~~~~~~~~~~~~~ 121 (199)
T PF04090_consen 42 RVLTDLLHLCLLRGDWDRAYRAFGLLIRCPEVDIRSLWGIGAEILMRRGEQNSELEFLEWLISFYPSRKAFNQYYNRRII 121 (199)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHcCCCCChHhcchHHHHHHHcCCCcchHHHHHHHHHHHHHHhhhccchhhhhcc
Confidence 356677888888899999999998888876655 3344555666777777666667777775422111111111111112
Q ss_pred EEEEEeCCCCC
Q 007573 553 VHYFLGGDMSH 563 (597)
Q Consensus 553 ~~~~~~~~~~~ 563 (597)
...|.+|.+.|
T Consensus 122 ~pvfrsGs~t~ 132 (199)
T PF04090_consen 122 APVFRSGSRTH 132 (199)
T ss_pred cccccCCCccc
Confidence 34577788776
No 402
>KOG4521 consensus Nuclear pore complex, Nup160 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=60.35 E-value=3e+02 Score=31.33 Aligned_cols=121 Identities=13% Similarity=0.087 Sum_probs=68.4
Q ss_pred HHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCC----hHHHHHHHHHHhhcCCHHHHHHHHhhCC-CCCCHHHHHHHHH
Q 007573 407 TFLSLLSACGHAGKVNESMDLFELMVKVYGIIPS----SEHYTCLVDILSRAGQLEKAWQITQGMP-FEADTGVWGSLLA 481 (597)
Q Consensus 407 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p~~~~~~~l~~ 481 (597)
.|..+++.+.+.+..+.+.++-..+++. ++++ ..+++++.+-....|.+-+|.+.+-+.+ ..-.......|+-
T Consensus 985 YYlkv~rlle~hn~~E~vcQlA~~AIe~--l~dd~ps~a~~~t~vFnhhldlgh~~qAy~ai~~npdserrrdcLRqlvi 1062 (1480)
T KOG4521|consen 985 YYLKVVRLLEEHNHAEEVCQLAVKAIEN--LPDDNPSVALISTTVFNHHLDLGHWFQAYKAILRNPDSERRRDCLRQLVI 1062 (1480)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHh--CCCcchhHHHHHHHHHHhhhchhhHHHHHHHHHcCCcHHHHHHHHHHHHH
Confidence 3666677777777777777777666653 3333 3456667777777777777777665533 1111234555555
Q ss_pred HHHhcCCH------------HHHHH-HHHHHHhcCCCC-CchHHHHHHHHHhcCCcHHHHHH
Q 007573 482 ACVINLNV------------ELGEL-AAKKMRELDPQN-SAVYVMLSNLYAAAGMWRDVTRV 529 (597)
Q Consensus 482 ~~~~~g~~------------~~a~~-~~~~~~~~~p~~-~~~~~~l~~~~~~~g~~~~A~~~ 529 (597)
...+.|.+ ++... +++.+-+..|-. +..|..|---+...++|.+|..+
T Consensus 1063 vLfecg~l~~L~~fpfigl~~eve~~l~esaaRs~~~mk~nyYelLYAfh~~RhN~Rkaatv 1124 (1480)
T KOG4521|consen 1063 VLFECGELEALATFPFIGLEQEVEDFLRESAARSSPSMKKNYYELLYAFHVARHNFRKAATV 1124 (1480)
T ss_pred HHHhccchHHHhhCCccchHHHHHHHHHHHHhhcCccccccHHHHHHHHHHhhcchhHHHHH
Confidence 55555543 23333 344444444544 44444444445667777766544
No 403
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=60.07 E-value=83 Score=25.36 Aligned_cols=42 Identities=10% Similarity=0.067 Sum_probs=32.7
Q ss_pred HHHHHHHHHHhcC--CCCCchHHHHHHHHHhcCCcHHHHHHHHH
Q 007573 491 LGELAAKKMRELD--PQNSAVYVMLSNLYAAAGMWRDVTRVRLL 532 (597)
Q Consensus 491 ~a~~~~~~~~~~~--p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 532 (597)
.+..+|..+.+.+ -..+..|...+..+...|++++|.++++.
T Consensus 81 ~~~~if~~l~~~~IG~~~A~fY~~wA~~le~~~~~~~A~~I~~~ 124 (126)
T PF08311_consen 81 DPREIFKFLYSKGIGTKLALFYEEWAEFLEKRGNFKKADEIYQL 124 (126)
T ss_dssp HHHHHHHHHHHHTTSTTBHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred CHHHHHHHHHHcCccHHHHHHHHHHHHHHHHcCCHHHHHHHHHh
Confidence 7788888887654 44477788888889999999999998875
No 404
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=59.89 E-value=40 Score=29.63 Aligned_cols=53 Identities=15% Similarity=0.044 Sum_probs=37.2
Q ss_pred hccCcHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHhhCC
Q 007573 416 GHAGKVNESMDLFELMVKVYGIIPSSEHYTCLVDILSRAGQLEKAWQITQGMP 468 (597)
Q Consensus 416 ~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 468 (597)
....+.+......+.+.+.....|++.+|..++.++...|+.++|.+..+++.
T Consensus 119 ~~~~~~~~l~~~~~~a~~~l~~~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~~ 171 (193)
T PF11846_consen 119 RLPPDPEMLEAYIEWAERLLRRRPDPNVYQRYALALALLGDPEEARQWLARAR 171 (193)
T ss_pred cCCCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 35555555555555555544567888888888888888888888888877765
No 405
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=59.35 E-value=36 Score=25.10 Aligned_cols=31 Identities=16% Similarity=0.213 Sum_probs=12.8
Q ss_pred CChhHHHHHHHhcccCCcchHHHHHHHHHcCC
Q 007573 188 GEVDKARALSDYMSFKNVVSWTVMITGYVKNE 219 (597)
Q Consensus 188 g~~~~A~~~~~~m~~~~~~~~~~ll~~~~~~g 219 (597)
|+.+.|.++++.+. ..+..|...+.++...|
T Consensus 50 g~~~~ar~LL~~L~-rg~~aF~~Fl~aLreT~ 80 (88)
T cd08819 50 GNESGARELLKRIV-QKEGWFSKFLQALRETE 80 (88)
T ss_pred CcHHHHHHHHHHhc-cCCcHHHHHHHHHHHcC
Confidence 44444444444444 33344444444444333
No 406
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=59.34 E-value=1.6e+02 Score=27.69 Aligned_cols=48 Identities=15% Similarity=0.207 Sum_probs=20.9
Q ss_pred HHHHHHcCChhHHHHHHHHhHHCCCCCCHHHHHHHHHHHhccchhHHHH
Q 007573 276 IAGYAQNGVAEEALRLFSGMIKMDMQPDDATLVSVFTACSALQLLNEGR 324 (597)
Q Consensus 276 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~ 324 (597)
.+.|..+|.+.+|.++-++.+.-. +.+...+-.++..++..||--.+.
T Consensus 286 a~~yle~g~~neAi~l~qr~ltld-pL~e~~nk~lm~~la~~gD~is~~ 333 (361)
T COG3947 286 ARAYLEAGKPNEAIQLHQRALTLD-PLSEQDNKGLMASLATLGDEISAI 333 (361)
T ss_pred HHHHHHcCChHHHHHHHHHHhhcC-hhhhHHHHHHHHHHHHhccchhhh
Confidence 334444555555554444444321 223334444444444444433333
No 407
>KOG4567 consensus GTPase-activating protein [General function prediction only]
Probab=58.82 E-value=1.4e+02 Score=28.15 Aligned_cols=73 Identities=11% Similarity=0.212 Sum_probs=51.1
Q ss_pred HHHHHHHHHCCCCCChHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhh----------cCCHHH
Q 007573 390 LIFFSQMGLNGFDPDGITFLSLLSACGHAGKVNESMDLFELMVKVYGIIPSSEHYTCLVDILSR----------AGQLEK 459 (597)
Q Consensus 390 ~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~----------~g~~~~ 459 (597)
.++++.|.+.++.|.-..|..+.-.+++.=.+.+.+.+|+.+... +.-|..|+..|+. .|++..
T Consensus 263 ~EL~~~L~~~~i~PqfyaFRWitLLLsQEF~lpDvi~lWDsl~sD------~~rfd~Ll~iCcsmlil~Re~il~~DF~~ 336 (370)
T KOG4567|consen 263 EELWRHLEEKEIHPQFYAFRWITLLLSQEFPLPDVIRLWDSLLSD------PQRFDFLLYICCSMLILVRERILEGDFTV 336 (370)
T ss_pred HHHHHHHHhcCCCccchhHHHHHHHHhccCCchhHHHHHHHHhcC------hhhhHHHHHHHHHHHHHHHHHHHhcchHH
Confidence 467788888888888888887777777888888888888887653 2235555544432 466666
Q ss_pred HHHHHhhCC
Q 007573 460 AWQITQGMP 468 (597)
Q Consensus 460 A~~~~~~~~ 468 (597)
-.++++.-+
T Consensus 337 nmkLLQ~yp 345 (370)
T KOG4567|consen 337 NMKLLQNYP 345 (370)
T ss_pred HHHHHhcCC
Confidence 677766654
No 408
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=58.60 E-value=33 Score=25.33 Aligned_cols=60 Identities=15% Similarity=0.110 Sum_probs=35.0
Q ss_pred HHHccCCCCChhhHHHHHHHHH---cCCChHHHHHHHccCCCCCchhHHHHHHHHHhCCChhHH
Q 007573 133 DYFQAMPERNTATYNAMISGFL---KHGRLEEATRLFEQMPRRNVISYTAMLDGFMKKGEVDKA 193 (597)
Q Consensus 133 ~~~~~~~~~~~~~~~~l~~~~~---~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 193 (597)
++++.+.+.+..+..-.=..-+ ..|+.+.|.+++..++ +.+..|...++++...|...-|
T Consensus 23 ~v~d~ll~~~ilT~~d~e~I~aa~~~~g~~~~ar~LL~~L~-rg~~aF~~Fl~aLreT~~~~LA 85 (88)
T cd08819 23 DVCDKCLEQGLLTEEDRNRIEAATENHGNESGARELLKRIV-QKEGWFSKFLQALRETEHHELA 85 (88)
T ss_pred HHHHHHHhcCCCCHHHHHHHHHhccccCcHHHHHHHHHHhc-cCCcHHHHHHHHHHHcCchhhh
Confidence 3344444444444443333333 4567777777777777 6667777777777776665544
No 409
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=58.14 E-value=21 Score=31.81 Aligned_cols=56 Identities=16% Similarity=0.074 Sum_probs=51.4
Q ss_pred HHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCcHHHHHHHHHHHhCCC
Q 007573 483 CVINLNVELGELAAKKMRELDPQNSAVYVMLSNLYAAAGMWRDVTRVRLLMKEQGV 538 (597)
Q Consensus 483 ~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 538 (597)
..+.+|.+.+.+++.+++++-|+....|..++..-.+.|+++.|.+.|++..+...
T Consensus 5 ~~~~~D~~aaaely~qal~lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp 60 (287)
T COG4976 5 LAESGDAEAAAELYNQALELAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDP 60 (287)
T ss_pred hcccCChHHHHHHHHHHhhcCchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCCc
Confidence 45678999999999999999999999999999999999999999999999987654
No 410
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=56.37 E-value=82 Score=23.54 Aligned_cols=53 Identities=15% Similarity=0.013 Sum_probs=36.4
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC--CchHHHHHHHHHhcCCcH
Q 007573 472 DTGVWGSLLAACVINLNVELGELAAKKMRELDPQN--SAVYVMLSNLYAAAGMWR 524 (597)
Q Consensus 472 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~--~~~~~~l~~~~~~~g~~~ 524 (597)
|...-..+...+...|+++.|++.+-++++.++.. ...-..++.++...|.-+
T Consensus 21 D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~~~~ar~~ll~~f~~lg~~~ 75 (90)
T PF14561_consen 21 DLDARYALADALLAAGDYEEALDQLLELVRRDRDYEDDAARKRLLDIFELLGPGD 75 (90)
T ss_dssp -HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCCCCHHHHHHHHHHHHH-TT-
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccccccHHHHHHHHHHHHcCCCC
Confidence 55667777778888888888888888888877654 666677777777777654
No 411
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=54.92 E-value=92 Score=26.90 Aligned_cols=29 Identities=24% Similarity=0.422 Sum_probs=18.2
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhcCCCCCch
Q 007573 480 LAACVINLNVELGELAAKKMRELDPQNSAV 509 (597)
Q Consensus 480 ~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~ 509 (597)
+..|.+.|.+++|.+++++..+ +|++...
T Consensus 118 V~VCm~~g~Fk~A~eiLkr~~~-d~~~~~~ 146 (200)
T cd00280 118 VAVCMENGEFKKAEEVLKRLFS-DPESQKL 146 (200)
T ss_pred HHHHHhcCchHHHHHHHHHHhc-CCCchhH
Confidence 3456777777777777777666 5554443
No 412
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=54.44 E-value=2.3e+02 Score=28.04 Aligned_cols=58 Identities=16% Similarity=0.076 Sum_probs=37.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHhhcCC------CChhHHHHHHHHHHHcCChhHHHHHHHHhHH
Q 007573 240 VVTAMITGFCKVGMLENARLLFERIQP------KDCVSFNAMIAGYAQNGVAEEALRLFSGMIK 297 (597)
Q Consensus 240 ~~~~l~~~~~~~g~~~~A~~~~~~~~~------~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 297 (597)
.+.-+.+-|..+|+++.|.+.+.+..+ .-+..|-.+|..-.-.|+|........+...
T Consensus 152 a~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~s 215 (466)
T KOG0686|consen 152 ALEDLGDHYLDCGQLDNALRCYSRARDYCTSAKHVINMCLNLILVSIYMGNWGHVLSYISKAES 215 (466)
T ss_pred HHHHHHHHHHHhccHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHh
Confidence 345566677778888888887777543 1233566666666677777777766666554
No 413
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=54.11 E-value=25 Score=32.76 Aligned_cols=63 Identities=16% Similarity=0.124 Sum_probs=45.9
Q ss_pred HhhcCCHHHHHHHHhhCC-CCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHH
Q 007573 451 LSRAGQLEKAWQITQGMP-FEAD-TGVWGSLLAACVINLNVELGELAAKKMRELDPQNSAVYVML 513 (597)
Q Consensus 451 ~~~~g~~~~A~~~~~~~~-~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l 513 (597)
..+.|+.++|..+|+... ..|+ +.++..++.....+++.-+|-.+|-+++.+.|.+..++..-
T Consensus 126 ~~~~Gk~ekA~~lfeHAlalaP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALtisP~nseALvnR 190 (472)
T KOG3824|consen 126 SRKDGKLEKAMTLFEHALALAPTNPQILIEMGQFREMHNEIVEADQCYVKALTISPGNSEALVNR 190 (472)
T ss_pred HHhccchHHHHHHHHHHHhcCCCCHHHHHHHhHHHHhhhhhHhhhhhhheeeeeCCCchHHHhhh
Confidence 457788888988887654 4554 45666666666667788888888888888888887765443
No 414
>PF09477 Type_III_YscG: Bacterial type II secretion system chaperone protein (type_III_yscG); InterPro: IPR013348 YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designated Yops (Yersinia outer proteins), in Yersinia. This entry consists of YscG from Yersinia, and functionally equivalent type III secretion proteins in other species: e.g. AscG in Aeromonas and LscG in Photorhabdus luminescens.; GO: 0009405 pathogenesis; PDB: 3PH0_D 2UWJ_G 2P58_C.
Probab=53.84 E-value=1e+02 Score=23.88 Aligned_cols=85 Identities=15% Similarity=0.160 Sum_probs=43.8
Q ss_pred hHHHHHHHHHHHHhCCCCcccHHHHHHHHHHhcCCHHHHHHHHhccCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 007573 320 LNEGRQSHVLVIRNGFEANVSVCNAVITMYSRCGGILDSELAFRQIHSPNLVSWNTIIAAFAQHGHYEKALIFFSQMGLN 399 (597)
Q Consensus 320 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 399 (597)
.++|..+.+.+...+. ....+--.-+..+...|++++|...=.....||...|-++-. .+.|-.+++...+.++..+
T Consensus 22 H~EA~tIa~wL~~~~~-~~E~v~lIr~~sLmNrG~Yq~ALl~~~~~~~pdL~p~~AL~a--~klGL~~~~e~~l~rla~~ 98 (116)
T PF09477_consen 22 HQEANTIADWLEQEGE-MEEVVALIRLSSLMNRGDYQEALLLPQCHCYPDLEPWAALCA--WKLGLASALESRLTRLASS 98 (116)
T ss_dssp HHHHHHHHHHHHHTTT-THHHHHHHHHHHHHHTT-HHHHHHHHTTS--GGGHHHHHHHH--HHCT-HHHHHHHHHHHCT-
T ss_pred HHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHhhHHHHHHHHhcccCCCccHHHHHHHHH--HhhccHHHHHHHHHHHHhC
Confidence 4455555555544432 122222223445566777777744444444677777766543 4667777777777777655
Q ss_pred CCCCChHHH
Q 007573 400 GFDPDGITF 408 (597)
Q Consensus 400 g~~p~~~~~ 408 (597)
| .|....|
T Consensus 99 g-~~~~q~F 106 (116)
T PF09477_consen 99 G-SPELQAF 106 (116)
T ss_dssp S-SHHHHHH
T ss_pred C-CHHHHHH
Confidence 5 4444443
No 415
>PF14863 Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB: 2YHE_C 2CG2_A 2CG3_A 2CFU_A 2CFZ_A.
Probab=53.83 E-value=65 Score=26.56 Aligned_cols=63 Identities=11% Similarity=0.006 Sum_probs=42.9
Q ss_pred HHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCc
Q 007573 458 EKAWQITQGMPFEADTGVWGSLLAACVINLNVELGELAAKKMRELDPQNSAVYVMLSNLYAAAGMW 523 (597)
Q Consensus 458 ~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~ 523 (597)
+.|.++.+-|- ...............|++..|..+.+.++..+|++..+....+++|...|.-
T Consensus 58 ~~A~~~v~l~G---G~d~vl~~A~~~~~~gd~~wA~~L~d~l~~adp~n~~ar~l~A~al~~lg~~ 120 (141)
T PF14863_consen 58 EEAKRYVELAG---GADKVLERAQAALAAGDYQWAAELLDHLVFADPDNEEARQLKADALEQLGYQ 120 (141)
T ss_dssp HHHHHHHHHTT---CHHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcC---CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHh
Confidence 45555555553 3333344455567889999999999999999999988888888887776543
No 416
>PF06957 COPI_C: Coatomer (COPI) alpha subunit C-terminus; InterPro: IPR010714 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the C terminus (approximately 500 residues) of the eukaryotic coatomer alpha subunit [, ]. This domain is found along with the IPR006692 from INTERPRO domain. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0005515 protein binding, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030126 COPI vesicle coat; PDB: 3MKR_B 3MV2_E 3MKQ_B 3MV3_A.
Probab=53.05 E-value=57 Score=32.52 Aligned_cols=109 Identities=16% Similarity=0.178 Sum_probs=57.6
Q ss_pred HHHcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhc---CC
Q 007573 380 FAQHGHYEKALIFFSQMGLNGFDPDGITFLSLLSACGHAGKVNESMDLFELMVKVYGIIPSSEHYTCLVDILSRA---GQ 456 (597)
Q Consensus 380 ~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~---g~ 456 (597)
+...|++.+|+..|+..+. ...+.......+.+++.+++...++ | +...-+..-.|. ..
T Consensus 214 ~~t~gKF~eA~~~Fr~iL~----------~i~l~vv~~~~E~~e~~eli~icrE-Y-------ilgl~iEl~Rr~l~~~~ 275 (422)
T PF06957_consen 214 LFTAGKFEEAIEIFRSILH----------SIPLLVVESREEEDEAKELIEICRE-Y-------ILGLSIELERRELPKDP 275 (422)
T ss_dssp HHHTT-HHHHHHHHHHHHH----------HHHC--BSSCHHHHHHHHHHHHHHH-H-------HHHHHHHHHHCTS-TTT
T ss_pred HHhcCCHHHHHHHHHHHHH----------HhheeeecCHHHHHHHHHHHHHHHH-H-------HHHHHHHHHHHhccccc
Confidence 4568999999999988763 2222223333344455555444322 1 111111111111 11
Q ss_pred HH------HHHHHHhhCCCCCCHH--HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC
Q 007573 457 LE------KAWQITQGMPFEADTG--VWGSLLAACVINLNVELGELAAKKMRELDPQN 506 (597)
Q Consensus 457 ~~------~A~~~~~~~~~~p~~~--~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~ 506 (597)
.+ |-..+|-....+|... ++..-+..+.+.+++.-|-.+.+++++++|..
T Consensus 276 ~~~~kR~lELAAYFThc~LQp~H~~LaLr~AM~~~~K~KNf~tAa~FArRLLel~p~~ 333 (422)
T PF06957_consen 276 VEDQKRNLELAAYFTHCKLQPSHLILALRSAMSQAFKLKNFITAASFARRLLELNPSP 333 (422)
T ss_dssp HHHHHHHHHHHHHHCCS---HHHHHHHHHHHHHHCCCTTBHHHHHHHHHHHHCT--SC
T ss_pred hhhHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHcCCCH
Confidence 12 2233444444555433 56777778889999999999999999999864
No 417
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=52.89 E-value=22 Score=38.23 Aligned_cols=46 Identities=22% Similarity=0.384 Sum_probs=24.8
Q ss_pred hhcCCHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 007573 452 SRAGQLEKAWQITQGMPFEADTGVWGSLLAACVINLNVELGELAAKKMR 500 (597)
Q Consensus 452 ~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 500 (597)
..+|+++.|++.-.++. +..+|..|+.....+|+.+-|+..|++..
T Consensus 654 Le~gnle~ale~akkld---d~d~w~rLge~Al~qgn~~IaEm~yQ~~k 699 (1202)
T KOG0292|consen 654 LECGNLEVALEAAKKLD---DKDVWERLGEEALRQGNHQIAEMCYQRTK 699 (1202)
T ss_pred hhcCCHHHHHHHHHhcC---cHHHHHHHHHHHHHhcchHHHHHHHHHhh
Confidence 34555555555555443 44555555555555555555555555443
No 418
>KOG1498 consensus 26S proteasome regulatory complex, subunit RPN5/PSMD12 [Posttranslational modification, protein turnover, chaperones]
Probab=52.73 E-value=2.4e+02 Score=27.75 Aligned_cols=114 Identities=18% Similarity=0.237 Sum_probs=76.3
Q ss_pred HHHHHHHhhcCCHHHHHHHHhhCCCCC------C--HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC-------Cch
Q 007573 445 TCLVDILSRAGQLEKAWQITQGMPFEA------D--TGVWGSLLAACVINLNVELGELAAKKMRELDPQN-------SAV 509 (597)
Q Consensus 445 ~~l~~~~~~~g~~~~A~~~~~~~~~~p------~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~-------~~~ 509 (597)
..|...+-.+|+.++|..++.+.+.+. . .....--+..|...+|+-.|.-+-+++...--+. ...
T Consensus 135 k~L~~ike~~Gdi~~Aa~il~el~VETygsm~~~ekV~fiLEQmrKOG~~~D~vra~i~skKI~~K~F~~~~~~~lKlky 214 (439)
T KOG1498|consen 135 KMLAKIKEEQGDIAEAADILCELQVETYGSMEKSEKVAFILEQMRLCLLRLDYVRAQIISKKINKKFFEKPDVQELKLKY 214 (439)
T ss_pred HHHHHHHHHcCCHHHHHHHHHhcchhhhhhhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhHHhcCCccHHHHHHHH
Confidence 346777888999999999988876211 0 0111122356778889998888887776543222 345
Q ss_pred HHHHHHHHHhcCCcHHHHHHHHHHHhCCCccCCCeeEEEECCEEEEEEe
Q 007573 510 YVMLSNLYAAAGMWRDVTRVRLLMKEQGVTKQCAYSWIEIGNKVHYFLG 558 (597)
Q Consensus 510 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~ 558 (597)
|..+.......+.+=++.+.|+.+...|-.+....-|+.+-..+..|+.
T Consensus 215 Y~lmI~l~lh~~~Yl~v~~~Yraiy~t~~vk~d~~kw~~vL~~iv~f~~ 263 (439)
T KOG1498|consen 215 YELMIRLGLHDRAYLNVCRSYRAIYDTGNVKEDPEKWIEVLRSIVSFCV 263 (439)
T ss_pred HHHHHHhcccccchhhHHHHHHHHhcccccccChhhhhhhhhhheeEEe
Confidence 7777888888889999999999998877655544556665555444444
No 419
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=52.24 E-value=2e+02 Score=26.83 Aligned_cols=199 Identities=10% Similarity=0.054 Sum_probs=0.0
Q ss_pred HHHHHHHcCChhHHHHHHHHhHHCCCCCCHHHHHHHHHHHhccchhHHHHHHHHHHHHhCCCCcccHHHHHHHHHHhcCC
Q 007573 275 MIAGYAQNGVAEEALRLFSGMIKMDMQPDDATLVSVFTACSALQLLNEGRQSHVLVIRNGFEANVSVCNAVITMYSRCGG 354 (597)
Q Consensus 275 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 354 (597)
+..-..+.+++++|+..+.+....|+..|..+. .-...+...+...|...|+
T Consensus 9 ~a~~~v~~~~~~~ai~~yk~iL~kg~s~dek~~----------------------------nEqE~tvlel~~lyv~~g~ 60 (421)
T COG5159 9 LANNAVKSNDIEKAIGEYKRILGKGVSKDEKTL----------------------------NEQEATVLELFKLYVSKGD 60 (421)
T ss_pred HHHHhhhhhhHHHHHHHHHHHhcCCCChhhhhh----------------------------hHHHHHHHHHHHHHHhcCC
Q ss_pred HHHHHHHHhccC--------CCChhhHHHHHHHHHHcCC-HHHHHHHHHHHHHCCCCCChHHH-----HHHHHHHhccCc
Q 007573 355 ILDSELAFRQIH--------SPNLVSWNTIIAAFAQHGH-YEKALIFFSQMGLNGFDPDGITF-----LSLLSACGHAGK 420 (597)
Q Consensus 355 ~~~A~~~~~~~~--------~~~~~~~~~li~~~~~~g~-~~~A~~~~~~m~~~g~~p~~~~~-----~~ll~~~~~~g~ 420 (597)
...-.+...... +.......+++.-+-...+ ++.-+.+....++-..+.+.... ..++..+.+.|.
T Consensus 61 ~~~l~~~i~~sre~m~~ftk~k~~KiirtLiekf~~~~dsl~dqi~v~~~~iewA~rEkr~fLr~~Le~Kli~l~y~~~~ 140 (421)
T COG5159 61 YCSLGDTITSSREAMEDFTKPKITKIIRTLIEKFPYSSDSLEDQIKVLTALIEWADREKRKFLRLELECKLIYLLYKTGK 140 (421)
T ss_pred cchHHHHHHhhHHHHHHhcchhHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Q ss_pred HHHHHHHHHHhHHh---cCCCCC-hHHHHHHHHHHhhcCCHHHHHHHHhhCC-------CCCCHHHHHHHHHH--HHhcC
Q 007573 421 VNESMDLFELMVKV---YGIIPS-SEHYTCLVDILSRAGQLEKAWQITQGMP-------FEADTGVWGSLLAA--CVINL 487 (597)
Q Consensus 421 ~~~a~~~~~~~~~~---~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~-------~~p~~~~~~~l~~~--~~~~g 487 (597)
+.+|......+..+ +.-+|+ ...+-.=-.+|-.-....++..-+.... .+|....-.-|+++ .+...
T Consensus 141 YsdalalIn~ll~ElKk~DDK~~Li~vhllESKvyh~irnv~KskaSLTaArt~Ans~YCPpqlqa~lDL~sGIlhcdd~ 220 (421)
T COG5159 141 YSDALALINPLLHELKKYDDKINLITVHLLESKVYHEIRNVSKSKASLTAARTLANSAYCPPQLQAQLDLLSGILHCDDR 220 (421)
T ss_pred HHHHHHHHHHHHHHHHhhcCccceeehhhhhHHHHHHHHhhhhhhhHHHHHHHHhhccCCCHHHHHHHHHhccceeeccc
Q ss_pred CHHHHHHHHHHHHh
Q 007573 488 NVELGELAAKKMRE 501 (597)
Q Consensus 488 ~~~~a~~~~~~~~~ 501 (597)
++.-|..+|-++++
T Consensus 221 dyktA~SYF~Ea~E 234 (421)
T COG5159 221 DYKTASSYFIEALE 234 (421)
T ss_pred cchhHHHHHHHHHh
No 420
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=51.43 E-value=1.1e+02 Score=23.74 Aligned_cols=27 Identities=19% Similarity=0.470 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHhHH
Q 007573 271 SFNAMIAGYAQNGVAEEALRLFSGMIK 297 (597)
Q Consensus 271 ~~~~li~~~~~~g~~~~A~~~~~~m~~ 297 (597)
-|..|+..|...|.+++|++++.+...
T Consensus 41 ~~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 41 KYQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred CHHHHHHHHHccCccHHHHHHHHHHhc
Confidence 377888888888888888888888776
No 421
>COG4941 Predicted RNA polymerase sigma factor containing a TPR repeat domain [Transcription]
Probab=51.15 E-value=2.3e+02 Score=27.19 Aligned_cols=120 Identities=9% Similarity=0.003 Sum_probs=78.2
Q ss_pred CHHHHHHHHHHHHHCCCCCChHHHHHHHHHHh------ccCcHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHH
Q 007573 385 HYEKALIFFSQMGLNGFDPDGITFLSLLSACG------HAGKVNESMDLFELMVKVYGIIPSSEHYTCLVDILSRAGQLE 458 (597)
Q Consensus 385 ~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~------~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~ 458 (597)
-.+++..++++....+ .|.++.....|.++- ..-++..-..+|+.+.. +.|++.+--.=.-++....-.+
T Consensus 271 lI~eg~all~rA~~~~-~pGPYqlqAAIaa~HA~a~~aedtDW~~I~aLYdaL~~---~apSPvV~LNRAVAla~~~Gp~ 346 (415)
T COG4941 271 LIDEGLALLDRALASR-RPGPYQLQAAIAALHARARRAEDTDWPAIDALYDALEQ---AAPSPVVTLNRAVALAMREGPA 346 (415)
T ss_pred HHHHHHHHHHHHHHcC-CCChHHHHHHHHHHHHhhcccCCCChHHHHHHHHHHHH---hCCCCeEeehHHHHHHHhhhHH
Confidence 3678888888888777 488888887777662 22367777777777763 4566443222223444555566
Q ss_pred HHHHHHhhCCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCc
Q 007573 459 KAWQITQGMPFEAD----TGVWGSLLAACVINLNVELGELAAKKMRELDPQNSA 508 (597)
Q Consensus 459 ~A~~~~~~~~~~p~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~ 508 (597)
.++.+++.+..+|. ...+..-...+.+.|..++|...|++++.+.++...
T Consensus 347 agLa~ve~L~~~~~L~gy~~~h~~RadlL~rLgr~~eAr~aydrAi~La~~~ae 400 (415)
T COG4941 347 AGLAMVEALLARPRLDGYHLYHAARADLLARLGRVEEARAAYDRAIALARNAAE 400 (415)
T ss_pred hHHHHHHHhhcccccccccccHHHHHHHHHHhCChHHHHHHHHHHHHhcCChHH
Confidence 67777766653332 123334445588899999999999999988877543
No 422
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=50.28 E-value=66 Score=20.61 Aligned_cols=34 Identities=12% Similarity=0.172 Sum_probs=23.1
Q ss_pred HHHcCCHHHHHHHHHHHHHCCCCCChHHHHHHHH
Q 007573 380 FAQHGHYEKALIFFSQMGLNGFDPDGITFLSLLS 413 (597)
Q Consensus 380 ~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~ 413 (597)
..+.|-.+++..++++|.+.|+..+...+..++.
T Consensus 12 Ak~~GlI~~~~~~l~~l~~~g~~is~~l~~~~L~ 45 (48)
T PF11848_consen 12 AKRRGLISEVKPLLDRLQQAGFRISPKLIEEILR 45 (48)
T ss_pred HHHcCChhhHHHHHHHHHHcCcccCHHHHHHHHH
Confidence 3456667777777777777777777666665554
No 423
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=49.97 E-value=70 Score=31.76 Aligned_cols=23 Identities=13% Similarity=0.242 Sum_probs=13.9
Q ss_pred HHHHHHhhcCCHHHHHHHHhhCC
Q 007573 446 CLVDILSRAGQLEKAWQITQGMP 468 (597)
Q Consensus 446 ~l~~~~~~~g~~~~A~~~~~~~~ 468 (597)
.|++..+-.|++..|+++++.+.
T Consensus 127 gLlRvh~LLGDY~~Alk~l~~id 149 (404)
T PF10255_consen 127 GLLRVHCLLGDYYQALKVLENID 149 (404)
T ss_pred HHHHHHHhccCHHHHHHHhhccC
Confidence 34555566666666666666554
No 424
>PRK09169 hypothetical protein; Validated
Probab=48.73 E-value=6.4e+02 Score=31.56 Aligned_cols=423 Identities=10% Similarity=0.028 Sum_probs=227.5
Q ss_pred CcchHHHHHHHHHcCCChHHHHHHHccC----C-------CCChhhHHHHHHHHHcCCChHHHHHHHccCC----C----
Q 007573 111 NIVSWNCMIAGCIDNDRIDDAFDYFQAM----P-------ERNTATYNAMISGFLKHGRLEEATRLFEQMP----R---- 171 (597)
Q Consensus 111 ~~~~~~~ll~~~~~~~~~~~A~~~~~~~----~-------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~----~---- 171 (597)
+...+..++.++++=.+.+.+...-+.+ . .-+......+++++.|--+.......-..+- .
T Consensus 161 ~~~~v~~lLNalSKWP~~~~c~~aa~~lA~~la~~~~l~~al~~q~va~~lnalSKwp~~~~cr~a~~~lA~rL~~~~~l 240 (2316)
T PRK09169 161 DAISFALLLNALSKWPDNTDCQTAAEQLADRLASDSRLLQAMDAQEVANALNALSKWPDSPRCRNAAERLAERLADEPGL 240 (2316)
T ss_pred hhHHHHHHHHHhccCCCchHHHHHHHHHHHHhccCHHHHHhcchHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHhcChHH
Confidence 6677777777777655444333222222 1 1244455556677776655544443333221 1
Q ss_pred ---CCchhHHHHHHHHHhCCChhHHHHHHHhc-----------ccCCcchHHHHHHHHHcCCChHHHHHHHhhcC----C
Q 007573 172 ---RNVISYTAMLDGFMKKGEVDKARALSDYM-----------SFKNVVSWTVMITGYVKNERFCEARELFYRMP----D 233 (597)
Q Consensus 172 ---~~~~~~~~li~~~~~~g~~~~A~~~~~~m-----------~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~----~ 233 (597)
-+......++++++|-.+-+.+...-..+ ..-|.......+.++++-.+-+.+......+. .
T Consensus 241 ~~~l~~q~va~~LNAlSKWp~~~~c~~aa~~lA~rla~~~~lr~~~~~Q~vAN~LNALSKwp~~~~cr~aa~~LA~rL~~ 320 (2316)
T PRK09169 241 LQSLRAQEVALLLNALSKWPDDEACRQAAEALAARLAREPGLRLALDPQGVANALNALSKWPDTEACRQAAEALAERLAQ 320 (2316)
T ss_pred HHhcCHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHhcChhhhhhcCHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHh
Confidence 23445667788888866655443333222 11245566777888887765443332222211 1
Q ss_pred -----CCCCchHHHHHHHHHHhcCCHHHHH----HHHhhcCC-------CChhHHHHHHHHHHHcCChhH----HHHHHH
Q 007573 234 -----YDKNVFVVTAMITGFCKVGMLENAR----LLFERIQP-------KDCVSFNAMIAGYAQNGVAEE----ALRLFS 293 (597)
Q Consensus 234 -----~~~~~~~~~~l~~~~~~~g~~~~A~----~~~~~~~~-------~~~~~~~~li~~~~~~g~~~~----A~~~~~ 293 (597)
..-+..-....+++++|..+-+.+. .+-+++.. -++.-....+.++.+-++-+. +..+..
T Consensus 321 ~~~l~~~~~aQ~vAN~LNALSKWp~~~~c~~Aa~~LA~rL~~~~~l~~~~npQelANaLnALSKwp~~~~cr~AA~aLA~ 400 (2316)
T PRK09169 321 ERGLLQAMNAQAVANALNALSKWPDEEACRAAAEALAARLARDAGLRRALNAQELANALNALSKWPDEEACRAAAEALAA 400 (2316)
T ss_pred ChhhhhhCCHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhChhhhhhCCHHHHHHHHHHHHcCCCchHHHHHHHHHHH
Confidence 1124444556677888877665432 22233321 255566677888888765432 333444
Q ss_pred HhHHC-C--CCCCHHHHHHHHHHHhccchhHHHHHHHHHH---HHh----CCCCcccHHHHHHHHHHhcCCHHHH----H
Q 007573 294 GMIKM-D--MQPDDATLVSVFTACSALQLLNEGRQSHVLV---IRN----GFEANVSVCNAVITMYSRCGGILDS----E 359 (597)
Q Consensus 294 ~m~~~-g--~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~---~~~----~~~~~~~~~~~l~~~~~~~g~~~~A----~ 359 (597)
.+... + -..|.......+++|++-+.-+........+ +.. .-..+..-....+.++.|-++.+.. .
T Consensus 401 rL~~~~~l~~~fnaQ~vANaLnALsKWp~~~~c~~aa~aLA~rl~~~a~lr~~fn~QeLaN~LnALsKWp~~~~c~~aa~ 480 (2316)
T PRK09169 401 RLARDAGLRAALNAQGVANALNALSKWPGAEACRQAALALAARLAADARLRNALSAQELANALNALSKWPDEAACRRAAE 480 (2316)
T ss_pred HHHhchhhhhhcChHHHHHHHHHHhcCCCchHHHHHHHHHHHHHhhchhhhhhCCHHHHHHHHHHHhcCCchHHHHHHHH
Confidence 33332 1 1246667778889998776655333322211 111 1133455666677788877654422 2
Q ss_pred HHHhccC-------CCChhhHHHHHHHHHHcCCHHHHHH----HHHHHHHC---CCCCChHHHHHHHHHHhccCcHHHHH
Q 007573 360 LAFRQIH-------SPNLVSWNTIIAAFAQHGHYEKALI----FFSQMGLN---GFDPDGITFLSLLSACGHAGKVNESM 425 (597)
Q Consensus 360 ~~~~~~~-------~~~~~~~~~li~~~~~~g~~~~A~~----~~~~m~~~---g~~p~~~~~~~ll~~~~~~g~~~~a~ 425 (597)
.+...+. .-+..-....+.++.+-++.+.+.. +..++... --..+..-+...+.++++-.+.+.+.
T Consensus 481 ~LA~rl~~~~~l~~af~~Q~lAN~LnALsKwp~~~~c~~aA~aLA~rla~~~~l~~afnpQ~lAN~LnALSKWP~~~~cr 560 (2316)
T PRK09169 481 ALAARLAGDAELRQALDAQGLANALNALSKWPDSDACRAAAEALADRLAQDPALLQAMDAQGLANTLNALSKWPEEPDCR 560 (2316)
T ss_pred HHHHHHhcChhhhhhcChHHHHHHHHHHhcCCccHHHHHHHHHHHHHHhcChhhhhhcCHHHHHHHHHHHHcCCCchHHH
Confidence 2332222 2455667778888888887665433 22222221 12346677888899999877643333
Q ss_pred ----HHHHHhHHhc--CCCCChHHHHHHHHHHhhcCCHH----HHHHHHhhCC------CCCCHHHHHHHHHHHHhcCCH
Q 007573 426 ----DLFELMVKVY--GIIPSSEHYTCLVDILSRAGQLE----KAWQITQGMP------FEADTGVWGSLLAACVINLNV 489 (597)
Q Consensus 426 ----~~~~~~~~~~--~~~p~~~~~~~l~~~~~~~g~~~----~A~~~~~~~~------~~p~~~~~~~l~~~~~~~g~~ 489 (597)
.+...+.++- --..+.......++++.+-+.-. .|..+...+. ..-+..-+..+++++.+-.+.
T Consensus 561 ~AA~aLA~~la~~~~l~~~~naQ~LAN~LnALSKWP~~~acr~Aa~aLA~rla~~~~~~~afn~Q~lAN~LnALSKWP~~ 640 (2316)
T PRK09169 561 AAAEALAARLARRPDLRSALNAQGLANLLNALSKWPDEDACRAAAEALAGRLARDAGLLDAFNAQDLANLLNGLSKWPDE 640 (2316)
T ss_pred HHHHHHHHHHhcChhhhhccCHHHHHHHHHHHhhCCCchhHHHHHHHHHHHHHhccccccccCHHHHHHHHHHHhcCCCc
Confidence 2333322210 11235566777888888877532 2333333332 233666788888888887776
Q ss_pred HHHHHHHHHHHh---cCC-----CCCchHHHHHHHHHhcCCcHHHHHHHHHH
Q 007573 490 ELGELAAKKMRE---LDP-----QNSAVYVMLSNLYAAAGMWRDVTRVRLLM 533 (597)
Q Consensus 490 ~~a~~~~~~~~~---~~p-----~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 533 (597)
+........+.. .++ -++..+.++++++++-.+.+.+.+.-..+
T Consensus 641 ~~cr~Aa~aLA~~L~~~~~l~~af~aQ~LaN~LnALSKWp~~~~c~~Aa~aL 692 (2316)
T PRK09169 641 DDCRQAAEALAARLLRDAGLPRAFDAQGLANALNALSKWPDEAACRAAALAL 692 (2316)
T ss_pred hhHHHHHHHHHHHHhhcchhHHhcCcHHHHHHHHHHHhCCCcHHHHHHHHHH
Confidence 655444333332 122 24666778888888888766544444433
No 425
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=48.48 E-value=1.1e+02 Score=23.01 Aligned_cols=54 Identities=17% Similarity=0.229 Sum_probs=28.3
Q ss_pred HHcCCHHHHHHHHHHHHHC----CCCCC----hHHHHHHHHHHhccCcHHHHHHHHHHhHHh
Q 007573 381 AQHGHYEKALIFFSQMGLN----GFDPD----GITFLSLLSACGHAGKVNESMDLFELMVKV 434 (597)
Q Consensus 381 ~~~g~~~~A~~~~~~m~~~----g~~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 434 (597)
.+.|++.+|.+.+.+..+. +..+. ......+.......|.+++|...+++.++.
T Consensus 9 ~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~~ 70 (94)
T PF12862_consen 9 LRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIRL 70 (94)
T ss_pred HHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 4567777776665554432 21111 112222334455567777777776666543
No 426
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=48.37 E-value=94 Score=26.83 Aligned_cols=62 Identities=13% Similarity=0.182 Sum_probs=32.9
Q ss_pred HHHHHHHHHHhHHhcCCCCC-hHH-----HHHHHHHHhhcCCHHHHHHHHhhCCCCCCHHHHHHHHHH
Q 007573 421 VNESMDLFELMVKVYGIIPS-SEH-----YTCLVDILSRAGQLEKAWQITQGMPFEADTGVWGSLLAA 482 (597)
Q Consensus 421 ~~~a~~~~~~~~~~~~~~p~-~~~-----~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~ 482 (597)
++.|+.+|+.+.+....+-+ .+. -...+-.|.+.|.+++|.+++++.-..|+.......+..
T Consensus 85 LESAl~v~~~I~~E~~~~~~lhe~i~~lik~~aV~VCm~~g~Fk~A~eiLkr~~~d~~~~~~r~kL~~ 152 (200)
T cd00280 85 LESALMVLESIEKEFSLPETLHEEIRKLIKEQAVAVCMENGEFKKAEEVLKRLFSDPESQKLRMKLLM 152 (200)
T ss_pred HHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHhcCCCchhHHHHHHH
Confidence 45566666666554221101 111 122345677888888888888776545555544443333
No 427
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=47.67 E-value=2.8e+02 Score=28.69 Aligned_cols=24 Identities=21% Similarity=0.375 Sum_probs=18.4
Q ss_pred HHHHHHHHhcCCHHHHHHHHhccC
Q 007573 343 NAVITMYSRCGGILDSELAFRQIH 366 (597)
Q Consensus 343 ~~l~~~~~~~g~~~~A~~~~~~~~ 366 (597)
..++.-|.+.+++++|..++..|.
T Consensus 412 ~eL~~~yl~~~qi~eAi~lL~smn 435 (545)
T PF11768_consen 412 VELISQYLRCDQIEEAINLLLSMN 435 (545)
T ss_pred HHHHHHHHhcCCHHHHHHHHHhCC
Confidence 346667888888888888888776
No 428
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=47.59 E-value=90 Score=31.04 Aligned_cols=57 Identities=5% Similarity=-0.064 Sum_probs=31.0
Q ss_pred hHHHHHHHHHhCCChhHHHHHHhhCCCCC----------------cchHHHHHHHHHcCCChHHHHHHHccCC
Q 007573 83 TWNAIITGYWQNGFLQESKNLFQSMPVKN----------------IVSWNCMIAGCIDNDRIDDAFDYFQAMP 139 (597)
Q Consensus 83 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~----------------~~~~~~ll~~~~~~~~~~~A~~~~~~~~ 139 (597)
+-..++..+....+..+-++..+....++ -++...|++.++-.||+..|+++++.+.
T Consensus 77 ~VLnvL~sLv~kS~I~e~l~~~~~~~~~~~~~~~~g~~~l~~~LGYFSligLlRvh~LLGDY~~Alk~l~~id 149 (404)
T PF10255_consen 77 SVLNVLYSLVDKSQINEQLEAEKRGEDPDEVAGEYGSSPLYKMLGYFSLIGLLRVHCLLGDYYQALKVLENID 149 (404)
T ss_pred HHHHHHHHHHHHHhHHHHHHHhhccCCchhhhcccccccHHHHhhHHHHHHHHHHHHhccCHHHHHHHhhccC
Confidence 33345566666777777666666654331 1233444455555566666665555554
No 429
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=47.28 E-value=1.4e+02 Score=23.35 Aligned_cols=27 Identities=15% Similarity=0.352 Sum_probs=21.1
Q ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 007573 372 SWNTIIAAFAQHGHYEKALIFFSQMGL 398 (597)
Q Consensus 372 ~~~~li~~~~~~g~~~~A~~~~~~m~~ 398 (597)
-|..++..|...|..++|++++.+...
T Consensus 41 ~~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 41 KYQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred CHHHHHHHHHccCccHHHHHHHHHHhc
Confidence 477778888888888888888887765
No 430
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=47.10 E-value=39 Score=31.71 Aligned_cols=41 Identities=22% Similarity=0.358 Sum_probs=33.7
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHhHHCCCCCCHHHHHHHH
Q 007573 271 SFNAMIAGYAQNGVAEEALRLFSGMIKMDMQPDDATLVSVF 311 (597)
Q Consensus 271 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll 311 (597)
-|+..|..-.+.||.++|+.++++..+.|+.--..+|...+
T Consensus 259 Yy~~aI~~AVk~gDi~KAL~LldEAe~LG~~~Ar~tFik~V 299 (303)
T PRK10564 259 YFNQAIKQAVKKGDVDKALKLLDEAERLGSTSARSTFISSV 299 (303)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCchHHHHHHHHh
Confidence 57789999999999999999999999998776666665443
No 431
>COG2912 Uncharacterized conserved protein [Function unknown]
Probab=46.54 E-value=80 Score=29.20 Aligned_cols=59 Identities=22% Similarity=0.231 Sum_probs=50.0
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCcHHHHHHHHHHHhC
Q 007573 478 SLLAACVINLNVELGELAAKKMRELDPQNSAVYVMLSNLYAAAGMWRDVTRVRLLMKEQ 536 (597)
Q Consensus 478 ~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 536 (597)
.+-+++...++++.|.+..++.+.++|.++.-..--+.+|...|...-|++-++...+.
T Consensus 186 ~lk~~~~~e~~~~~al~~~~r~l~l~P~dp~eirDrGliY~ql~c~~vAl~dl~~~~~~ 244 (269)
T COG2912 186 NLKAALLRELQWELALRVAERLLDLNPEDPYEIRDRGLIYAQLGCYHVALEDLSYFVEH 244 (269)
T ss_pred HHHHHHHHhhchHHHHHHHHHHHhhCCCChhhccCcHHHHHhcCCchhhHHHHHHHHHh
Confidence 34455888899999999999999999999888888899999999999999988876553
No 432
>PF12069 DUF3549: Protein of unknown function (DUF3549); InterPro: IPR021936 This family of proteins is functionally uncharacterised. This protein is found in bacteria. Proteins in this family are about 340 amino acids in length. This protein has a conserved LDE sequence motif.
Probab=46.53 E-value=2.8e+02 Score=26.82 Aligned_cols=90 Identities=12% Similarity=0.086 Sum_probs=53.5
Q ss_pred HHHHHHHHhcCCHHHHHHHHhhcCCCChhHHHHHHHHHHHcCChhHH-HHHHHHhHHCCCCCCHHHHHHHHHHHhccchh
Q 007573 242 TAMITGFCKVGMLENARLLFERIQPKDCVSFNAMIAGYAQNGVAEEA-LRLFSGMIKMDMQPDDATLVSVFTACSALQLL 320 (597)
Q Consensus 242 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A-~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~ 320 (597)
..+.+.++|.++-+.+..+-+.+..--......+..++-...-.+.. ..+++.+... ||......++++.+.....
T Consensus 170 QGIAD~~aRl~~~~~~~~l~~al~~lP~~vl~aL~~~LEh~~l~~~l~~~l~~~~~~~---~d~~~~~a~lRAls~~~~~ 246 (340)
T PF12069_consen 170 QGIADICARLDQEDNAQLLRKALPHLPPEVLYALCGCLEHQPLPDKLAEALLERLEQA---PDLELLSALLRALSSAPAS 246 (340)
T ss_pred hHHHHHHHHhcccchHHHHHHHHhhCChHHHHHHHHHhcCCCCCHHHHHHHHHHHHcC---CCHHHHHHHHHHHcCCCch
Confidence 34566777777766666555555543444455555555544433333 3344444333 8888888888888877766
Q ss_pred HHHHHHHHHHHHhC
Q 007573 321 NEGRQSHVLVIRNG 334 (597)
Q Consensus 321 ~~a~~~~~~~~~~~ 334 (597)
......+..+++..
T Consensus 247 ~~~~~~i~~~L~~~ 260 (340)
T PF12069_consen 247 DLVAILIDALLQSP 260 (340)
T ss_pred hHHHHHHHHHhcCc
Confidence 66666566665544
No 433
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=46.32 E-value=2.8e+02 Score=26.76 Aligned_cols=116 Identities=10% Similarity=-0.024 Sum_probs=71.0
Q ss_pred HHHHHHHHHHHHHCCCCCChHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhh---cCCHHHHHH
Q 007573 386 YEKALIFFSQMGLNGFDPDGITFLSLLSACGHAGKVNESMDLFELMVKVYGIIPSSEHYTCLVDILSR---AGQLEKAWQ 462 (597)
Q Consensus 386 ~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~---~g~~~~A~~ 462 (597)
.+.-+.++++..+.. +-+......++..+.+..+.+...+-|+.+...+ +-+...|...++.... .-.+++..+
T Consensus 47 ~E~klsilerAL~~n-p~~~~L~l~~l~~~~~~~~~~~l~~~we~~l~~~--~~~~~LW~~yL~~~q~~~~~f~v~~~~~ 123 (321)
T PF08424_consen 47 AERKLSILERALKHN-PDSERLLLGYLEEGEKVWDSEKLAKKWEELLFKN--PGSPELWREYLDFRQSNFASFTVSDVRD 123 (321)
T ss_pred HHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHC--CCChHHHHHHHHHHHHHhccCcHHHHHH
Confidence 355667777777662 3345566677777777778888888888887642 2246666666654433 224555555
Q ss_pred HHhhCC-------CC--------CC--HH---HHHHHHHHHHhcCCHHHHHHHHHHHHhcCC
Q 007573 463 ITQGMP-------FE--------AD--TG---VWGSLLAACVINLNVELGELAAKKMRELDP 504 (597)
Q Consensus 463 ~~~~~~-------~~--------p~--~~---~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p 504 (597)
+|.+.. .. ++ .. ++..+...+.+.|-.+.|+.+++-+++.+-
T Consensus 124 ~y~~~l~~L~~~~~~~~~~~~~~~~~e~~~l~v~~r~~~fl~~aG~~E~Ava~~Qa~lE~n~ 185 (321)
T PF08424_consen 124 VYEKCLRALSRRRSGRMTSHPDLPELEEFMLYVFLRLCRFLRQAGYTERAVALWQALLEFNF 185 (321)
T ss_pred HHHHHHHHHHHhhccccccccchhhHHHHHHHHHHHHHHHHHHCCchHHHHHHHHHHHHHHc
Confidence 554321 11 11 11 222333345689999999999999999764
No 434
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=45.90 E-value=2.3e+02 Score=25.69 Aligned_cols=132 Identities=11% Similarity=0.105 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHhHHCCCCCCHHHHHHHHHHHhccchhHHHHHHHHHHHHhCCCCcccHHHHHHHHHH
Q 007573 271 SFNAMIAGYAQNGVAEEALRLFSGMIKMDMQPDDATLVSVFTACSALQLLNEGRQSHVLVIRNGFEANVSVCNAVITMYS 350 (597)
Q Consensus 271 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 350 (597)
+...-+..|...-++.-|-....+..+ ..--...+--|.+..+.+-..++.+-....+++.+..-..+++ +.
T Consensus 132 AlRRtMEiyS~ttRFalaCN~s~KIiE------PIQSRCAiLRysklsd~qiL~Rl~~v~k~Ekv~yt~dgLeaii--ft 203 (333)
T KOG0991|consen 132 ALRRTMEIYSNTTRFALACNQSEKIIE------PIQSRCAILRYSKLSDQQILKRLLEVAKAEKVNYTDDGLEAII--FT 203 (333)
T ss_pred HHHHHHHHHcccchhhhhhcchhhhhh------hHHhhhHhhhhcccCHHHHHHHHHHHHHHhCCCCCcchHHHhh--hh
Q ss_pred hcCCHHHHHHHHhccC----------------CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCChHHHHHH
Q 007573 351 RCGGILDSELAFRQIH----------------SPNLVSWNTIIAAFAQHGHYEKALIFFSQMGLNGFDPDGITFLSL 411 (597)
Q Consensus 351 ~~g~~~~A~~~~~~~~----------------~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l 411 (597)
..|++..|...++.-. .|.+.....++..|. .+++++|.+.+.++-+.|+.|....-+.+
T Consensus 204 a~GDMRQalNnLQst~~g~g~Vn~enVfKv~d~PhP~~v~~ml~~~~-~~~~~~A~~il~~lw~lgysp~Dii~~~F 279 (333)
T KOG0991|consen 204 AQGDMRQALNNLQSTVNGFGLVNQENVFKVCDEPHPLLVKKMLQACL-KRNIDEALKILAELWKLGYSPEDIITTLF 279 (333)
T ss_pred ccchHHHHHHHHHHHhccccccchhhhhhccCCCChHHHHHHHHHHH-hccHHHHHHHHHHHHHcCCCHHHHHHHHH
No 435
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=45.40 E-value=2.9e+02 Score=26.66 Aligned_cols=109 Identities=10% Similarity=0.003 Sum_probs=74.5
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHh---cCCcHHHHHHHHHHHhCCCccCCCeeEE
Q 007573 471 ADTGVWGSLLAACVINLNVELGELAAKKMRELDPQNSAVYVMLSNLYAA---AGMWRDVTRVRLLMKEQGVTKQCAYSWI 547 (597)
Q Consensus 471 p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~---~g~~~~A~~~~~~~~~~~~~~~~~~s~~ 547 (597)
.+...+..++..+.+..+.+...+-+++++..+|.++..+...++.... .-.+++...+|.+..+.-.....+.
T Consensus 63 ~~~~L~l~~l~~~~~~~~~~~l~~~we~~l~~~~~~~~LW~~yL~~~q~~~~~f~v~~~~~~y~~~l~~L~~~~~~~--- 139 (321)
T PF08424_consen 63 DSERLLLGYLEEGEKVWDSEKLAKKWEELLFKNPGSPELWREYLDFRQSNFASFTVSDVRDVYEKCLRALSRRRSGR--- 139 (321)
T ss_pred CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHhhccc---
Confidence 3456778888888888899999999999999999998888777766554 3457788888877765321111111
Q ss_pred EECCEEEEEEeCCCCCcc----hHHHHHHHHHHHHHHhhcCCccchhcccc
Q 007573 548 EIGNKVHYFLGGDMSHPC----IDKIHLELKRASVQMKSVDDFVEIATSWS 594 (597)
Q Consensus 548 ~~~~~~~~~~~~~~~~p~----~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 594 (597)
...|+. ...+...+-++...+.+.|..+.-..-|+
T Consensus 140 ------------~~~~~~~~~~e~~~l~v~~r~~~fl~~aG~~E~Ava~~Q 178 (321)
T PF08424_consen 140 ------------MTSHPDLPELEEFMLYVFLRLCRFLRQAGYTERAVALWQ 178 (321)
T ss_pred ------------cccccchhhHHHHHHHHHHHHHHHHHHCCchHHHHHHHH
Confidence 011222 33466677778888888888776665554
No 436
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=44.57 E-value=1.6e+02 Score=27.89 Aligned_cols=104 Identities=9% Similarity=0.149 Sum_probs=72.7
Q ss_pred HhccCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCC---CCCChHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCC
Q 007573 362 FRQIHSPNLVSWNTIIAAFAQHGHYEKALIFFSQMGLNG---FDPDGITFLSLLSACGHAGKVNESMDLFELMVKVYGII 438 (597)
Q Consensus 362 ~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g---~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~ 438 (597)
|..-.+....+....+..-....+++.++.++-+++... ..|+...+ .+++.|. .-++++++.++..=++ ||+-
T Consensus 56 F~~g~~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~~~-~~irlll-ky~pq~~i~~l~npIq-YGiF 132 (418)
T KOG4570|consen 56 FERGLPVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWTIH-TWIRLLL-KYDPQKAIYTLVNPIQ-YGIF 132 (418)
T ss_pred hhcCCCcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccccHH-HHHHHHH-ccChHHHHHHHhCcch-hccc
Confidence 333334455566666666667788999999998887532 22332222 2333333 3467788888776665 6999
Q ss_pred CChHHHHHHHHHHhhcCCHHHHHHHHhhCC
Q 007573 439 PSSEHYTCLVDILSRAGQLEKAWQITQGMP 468 (597)
Q Consensus 439 p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 468 (597)
||..+++.+++.+.+.++..+|..+.-.|.
T Consensus 133 ~dqf~~c~l~D~flk~~n~~~aa~vvt~~~ 162 (418)
T KOG4570|consen 133 PDQFTFCLLMDSFLKKENYKDAASVVTEVM 162 (418)
T ss_pred cchhhHHHHHHHHHhcccHHHHHHHHHHHH
Confidence 999999999999999999999988876654
No 437
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=43.71 E-value=49 Score=31.05 Aligned_cols=40 Identities=25% Similarity=0.311 Sum_probs=31.2
Q ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCChHHHHHH
Q 007573 372 SWNTIIAAFAQHGHYEKALIFFSQMGLNGFDPDGITFLSL 411 (597)
Q Consensus 372 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l 411 (597)
-|+..|....+.|++++|+.++++..+.|..--..+|...
T Consensus 259 Yy~~aI~~AVk~gDi~KAL~LldEAe~LG~~~Ar~tFik~ 298 (303)
T PRK10564 259 YFNQAIKQAVKKGDVDKALKLLDEAERLGSTSARSTFISS 298 (303)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCchHHHHHHHH
Confidence 4678888888999999999999999988866555555443
No 438
>PF11838 ERAP1_C: ERAP1-like C-terminal domain; InterPro: IPR024571 This entry represents the uncharacterised C-terminal domain of zinc metallopeptidases belonging to MEROPS peptidase family M1 (aminopeptidase N, clan MA), with a single member characterised in Streptomyces lividans: aminopeptidase G []. The rest of the members of this family are identified as aminopeptidase N of the actinomycete-type. The spectrum of activity may differ somewhat from the aminopeptidase N clade of Escherichia coli and most other proteobacteria, which are well separated phylogenetically within the M1 family. ; PDB: 3MDJ_A 2YD0_A 3QNF_C 3RJO_A 1Z5H_A 3Q7J_A 1Z1W_A 3SE6_B.
Probab=42.70 E-value=3.1e+02 Score=26.24 Aligned_cols=84 Identities=15% Similarity=-0.023 Sum_probs=58.1
Q ss_pred cHHHHHHHHHHhHHhcCC---CCChHHHHHHHHHHhhcCCHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 007573 420 KVNESMDLFELMVKVYGI---IPSSEHYTCLVDILSRAGQLEKAWQITQGMPFEADTGVWGSLLAACVINLNVELGELAA 496 (597)
Q Consensus 420 ~~~~a~~~~~~~~~~~~~---~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~ 496 (597)
-.+.|.+.|+.......- ..++.....+.....+.|..++-..+++.....++...-..++.+.....+.+...+++
T Consensus 145 ~~~~a~~~~~~~~~~~~~~~~~i~~dlr~~v~~~~~~~g~~~~~~~l~~~~~~~~~~~~k~~~l~aLa~~~d~~~~~~~l 224 (324)
T PF11838_consen 145 CVAEARELFKAWLDGNDSPESSIPPDLRWAVYCAGVRNGDEEEWDFLWELYKNSTSPEEKRRLLSALACSPDPELLKRLL 224 (324)
T ss_dssp HHHHHHHHHHHHHHTTT-TTSTS-HHHHHHHHHHHTTS--HHHHHHHHHHHHTTSTHHHHHHHHHHHTT-S-HHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCcccccccchHHHHHHHHHHHHHhhHhhHHHHHHHHhccCCHHHHHHHHHhhhccCCHHHHHHHH
Confidence 367788888888763111 34566667777777888887776666666655667788888999988888999989999
Q ss_pred HHHHhcC
Q 007573 497 KKMRELD 503 (597)
Q Consensus 497 ~~~~~~~ 503 (597)
+.++..+
T Consensus 225 ~~~l~~~ 231 (324)
T PF11838_consen 225 DLLLSND 231 (324)
T ss_dssp HHHHCTS
T ss_pred HHHcCCc
Confidence 9998843
No 439
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=42.25 E-value=37 Score=31.69 Aligned_cols=55 Identities=16% Similarity=0.204 Sum_probs=38.3
Q ss_pred HhccCcHHHHHHHHHHhHHhcCCCCC-hHHHHHHHHHHhhcCCHHHHHHHHhhCC-CCCC
Q 007573 415 CGHAGKVNESMDLFELMVKVYGIIPS-SEHYTCLVDILSRAGQLEKAWQITQGMP-FEAD 472 (597)
Q Consensus 415 ~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p~ 472 (597)
..+.|+.++|..+|+.... +.|+ +.....+.......++.-+|-.+|-+.. +.|.
T Consensus 126 ~~~~Gk~ekA~~lfeHAla---laP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALtisP~ 182 (472)
T KOG3824|consen 126 SRKDGKLEKAMTLFEHALA---LAPTNPQILIEMGQFREMHNEIVEADQCYVKALTISPG 182 (472)
T ss_pred HHhccchHHHHHHHHHHHh---cCCCCHHHHHHHhHHHHhhhhhHhhhhhhheeeeeCCC
Confidence 3578999999999998874 4555 5555555555555667777877776654 5553
No 440
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=42.13 E-value=27 Score=33.22 Aligned_cols=114 Identities=15% Similarity=0.088 Sum_probs=59.9
Q ss_pred ccCcHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHhhCC-CCCCHH-HHHHHHHHHHhcCCHHHHHH
Q 007573 417 HAGKVNESMDLFELMVKVYGIIPSSEHYTCLVDILSRAGQLEKAWQITQGMP-FEADTG-VWGSLLAACVINLNVELGEL 494 (597)
Q Consensus 417 ~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p~~~-~~~~l~~~~~~~g~~~~a~~ 494 (597)
..|.++.|++.|...+.. -++....|..=..++.+.++...|++-+.... +.||.. -|-.-..+-+..|++++|..
T Consensus 126 n~G~~~~ai~~~t~ai~l--np~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Dsa~~ykfrg~A~rllg~~e~aa~ 203 (377)
T KOG1308|consen 126 NDGEFDTAIELFTSAIEL--NPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPDSAKGYKFRGYAERLLGNWEEAAH 203 (377)
T ss_pred cCcchhhhhccccccccc--CCchhhhcccccceeeeccCCchhhhhhhhhhccCcccccccchhhHHHHHhhchHHHHH
Confidence 345566666666655532 12334445555556666666666666555433 455543 34334444556677777777
Q ss_pred HHHHHHhcCCCCCchHHHHHHHHHhcCCcHHHHHHHHHH
Q 007573 495 AAKKMRELDPQNSAVYVMLSNLYAAAGMWRDVTRVRLLM 533 (597)
Q Consensus 495 ~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 533 (597)
.++.+.+++-+. .+-..+-.+.-+.+..++-...+++.
T Consensus 204 dl~~a~kld~dE-~~~a~lKeV~p~a~ki~e~~~k~er~ 241 (377)
T KOG1308|consen 204 DLALACKLDYDE-ANSATLKEVFPNAGKIEEHRRKYERA 241 (377)
T ss_pred HHHHHHhccccH-HHHHHHHHhccchhhhhhchhHHHHH
Confidence 777777766542 22233333444444444444444443
No 441
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=41.86 E-value=1.8e+02 Score=23.35 Aligned_cols=42 Identities=7% Similarity=0.196 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHCCCCCC-hHHHHHHHHHHhccCcHHHHHHHHH
Q 007573 388 KALIFFSQMGLNGFDPD-GITFLSLLSACGHAGKVNESMDLFE 429 (597)
Q Consensus 388 ~A~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~ 429 (597)
.+.++|..|...|+.-. +.-|......+...|++++|.++|+
T Consensus 81 ~~~~if~~l~~~~IG~~~A~fY~~wA~~le~~~~~~~A~~I~~ 123 (126)
T PF08311_consen 81 DPREIFKFLYSKGIGTKLALFYEEWAEFLEKRGNFKKADEIYQ 123 (126)
T ss_dssp HHHHHHHHHHHHTTSTTBHHHHHHHHHHHHHTT-HHHHHHHHH
T ss_pred CHHHHHHHHHHcCccHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 55555555555554443 3334444445555555555555554
No 442
>KOG2581 consensus 26S proteasome regulatory complex, subunit RPN3/PSMD3 [Posttranslational modification, protein turnover, chaperones]
Probab=41.66 E-value=3.6e+02 Score=26.71 Aligned_cols=91 Identities=10% Similarity=0.093 Sum_probs=45.7
Q ss_pred HHhccCcHHHHHHHHHHhHHhcCCCCC----hHHHHHHHHHHhhcCCHHHHHHHHhhCCCCCCH---HHH----HHHHHH
Q 007573 414 ACGHAGKVNESMDLFELMVKVYGIIPS----SEHYTCLVDILSRAGQLEKAWQITQGMPFEADT---GVW----GSLLAA 482 (597)
Q Consensus 414 ~~~~~g~~~~a~~~~~~~~~~~~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~---~~~----~~l~~~ 482 (597)
++...|+...-...+....+...+..| ....|.|++.|...+.++.|.++..+... |+. .-| --++..
T Consensus 178 ~~E~~~~l~~~rs~l~~~lrtAtLrhd~e~qavLiN~LLr~yL~n~lydqa~~lvsK~~~-pe~~snne~ARY~yY~GrI 256 (493)
T KOG2581|consen 178 SYELEGRLADIRSFLHALLRTATLRHDEEGQAVLINLLLRNYLHNKLYDQADKLVSKSVY-PEAASNNEWARYLYYLGRI 256 (493)
T ss_pred HHHhhcchHHHHHHHHHHHHHhhhcCcchhHHHHHHHHHHHHhhhHHHHHHHHHhhcccC-ccccccHHHHHHHHHHhhH
Confidence 334455555544444444333233323 23345555666666777777777666551 111 111 112233
Q ss_pred HHhcCCHHHHHHHHHHHHhcCCC
Q 007573 483 CVINLNVELGELAAKKMRELDPQ 505 (597)
Q Consensus 483 ~~~~g~~~~a~~~~~~~~~~~p~ 505 (597)
-+.++++..|.+.+-.++...|.
T Consensus 257 kaiqldYssA~~~~~qa~rkapq 279 (493)
T KOG2581|consen 257 KAIQLDYSSALEYFLQALRKAPQ 279 (493)
T ss_pred HHhhcchhHHHHHHHHHHHhCcc
Confidence 44566677777776666666654
No 443
>PHA02537 M terminase endonuclease subunit; Provisional
Probab=41.38 E-value=1.8e+02 Score=26.36 Aligned_cols=22 Identities=9% Similarity=0.039 Sum_probs=18.4
Q ss_pred hcCCHHHHHHHHHHHHhcCCCC
Q 007573 485 INLNVELGELAAKKMRELDPQN 506 (597)
Q Consensus 485 ~~g~~~~a~~~~~~~~~~~p~~ 506 (597)
..++...|..+++++++++|+-
T Consensus 190 d~~~l~~Al~~L~rA~~l~~k~ 211 (230)
T PHA02537 190 DAETLQLALALLQRAFQLNDKC 211 (230)
T ss_pred CcccHHHHHHHHHHHHHhCCCC
Confidence 4457789999999999999874
No 444
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=40.99 E-value=2.8e+02 Score=25.35 Aligned_cols=80 Identities=14% Similarity=0.011 Sum_probs=47.7
Q ss_pred cCCChHHHHHHHhhcCCCCCCchH-HHHHHHHHHhcCCHHHHHHHHhhcCC--C-ChhHHHHHHHHHHHcCChhHHHHHH
Q 007573 217 KNERFCEARELFYRMPDYDKNVFV-VTAMITGFCKVGMLENARLLFERIQP--K-DCVSFNAMIAGYAQNGVAEEALRLF 292 (597)
Q Consensus 217 ~~g~~~~a~~~~~~~~~~~~~~~~-~~~l~~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~~~ 292 (597)
...+++.|...|.+...+.|++.+ |+.-+..+.+..+++.+..--.+..+ + .+.....+..++.....+++|+..+
T Consensus 22 ~~k~y~~ai~~y~raI~~nP~~~~Y~tnralchlk~~~~~~v~~dcrralql~~N~vk~h~flg~~~l~s~~~~eaI~~L 101 (284)
T KOG4642|consen 22 IPKRYDDAIDCYSRAICINPTVASYYTNRALCHLKLKHWEPVEEDCRRALQLDPNLVKAHYFLGQWLLQSKGYDEAIKVL 101 (284)
T ss_pred chhhhchHHHHHHHHHhcCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcChHHHHHHHHHHHHHHhhccccHHHHHH
Confidence 344566677777777667776644 34556666666666665544443332 2 2234445556666677777887777
Q ss_pred HHhH
Q 007573 293 SGMI 296 (597)
Q Consensus 293 ~~m~ 296 (597)
.+..
T Consensus 102 qra~ 105 (284)
T KOG4642|consen 102 QRAY 105 (284)
T ss_pred HHHH
Confidence 7663
No 445
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=39.67 E-value=3.3e+02 Score=25.65 Aligned_cols=110 Identities=13% Similarity=0.143 Sum_probs=63.9
Q ss_pred ChhHHHHHHHHhHH-CCCCCCHHHHHHHHHHHhc-c-chhHHHHHHHHHHHH-hCCCCcccHHHHHHHHHHhcCCHHHHH
Q 007573 284 VAEEALRLFSGMIK-MDMQPDDATLVSVFTACSA-L-QLLNEGRQSHVLVIR-NGFEANVSVCNAVITMYSRCGGILDSE 359 (597)
Q Consensus 284 ~~~~A~~~~~~m~~-~g~~p~~~~~~~ll~~~~~-~-~~~~~a~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~g~~~~A~ 359 (597)
...+|+.+|+.... ..+--|......+++.... . .....-.++...+.. .+-.++..+...++..+++.+++.+-.
T Consensus 143 ~Vv~aL~L~~~~~~~~~Ii~d~evislLL~sMv~~~~~~l~alYEvV~~l~~t~~~~l~~~vi~~Il~~L~~~~dW~kl~ 222 (292)
T PF13929_consen 143 IVVEALKLYDGLNPDESIIFDEEVISLLLKSMVIDENTKLNALYEVVDFLVSTFSKSLTRNVIISILEILAESRDWNKLF 222 (292)
T ss_pred HHHHHHHHhhccCcccceeeChHHHHHHHHHHHhccccchhhHHHHHHHHHhccccCCChhHHHHHHHHHHhcccHHHHH
Confidence 34566666663222 2344566666666665543 1 122223333333332 234566667777777788888887777
Q ss_pred HHHhccC-----CCChhhHHHHHHHHHHcCCHHHHHHHH
Q 007573 360 LAFRQIH-----SPNLVSWNTIIAAFAQHGHYEKALIFF 393 (597)
Q Consensus 360 ~~~~~~~-----~~~~~~~~~li~~~~~~g~~~~A~~~~ 393 (597)
+++.... ..|...|..+|......|+..-...+.
T Consensus 223 ~fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~kiI 261 (292)
T PF13929_consen 223 QFWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRKII 261 (292)
T ss_pred HHHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHHHh
Confidence 7776654 346677888888888788765544443
No 446
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=39.53 E-value=3.2e+02 Score=25.43 Aligned_cols=83 Identities=12% Similarity=0.187 Sum_probs=42.1
Q ss_pred CcccHHHHHHHHHHhcCCHHHHHHHHhccCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHh
Q 007573 337 ANVSVCNAVITMYSRCGGILDSELAFRQIHSPNLVSWNTIIAAFAQHGHYEKALIFFSQMGLNGFDPDGITFLSLLSACG 416 (597)
Q Consensus 337 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~ 416 (597)
.++.....+...|.+.|++.+|+..|-.-..++...+..++......|...++ |...-. .+--|.
T Consensus 88 Gdp~LH~~~a~~~~~e~~~~~A~~Hfl~~~~~~~~~~~~ll~~~~~~~~~~e~--------------dlfi~R-aVL~yL 152 (260)
T PF04190_consen 88 GDPELHHLLAEKLWKEGNYYEAERHFLLGTDPSAFAYVMLLEEWSTKGYPSEA--------------DLFIAR-AVLQYL 152 (260)
T ss_dssp --HHHHHHHHHHHHHTT-HHHHHHHHHTS-HHHHHHHHHHHHHHHHHTSS--H--------------HHHHHH-HHHHHH
T ss_pred CCHHHHHHHHHHHHhhccHHHHHHHHHhcCChhHHHHHHHHHHHHHhcCCcch--------------hHHHHH-HHHHHH
Confidence 35677888888888999888888777554333333332233222222322222 111111 222344
Q ss_pred ccCcHHHHHHHHHHhHHh
Q 007573 417 HAGKVNESMDLFELMVKV 434 (597)
Q Consensus 417 ~~g~~~~a~~~~~~~~~~ 434 (597)
-.+++..|...+....+.
T Consensus 153 ~l~n~~~A~~~~~~f~~~ 170 (260)
T PF04190_consen 153 CLGNLRDANELFDTFTSK 170 (260)
T ss_dssp HTTBHHHHHHHHHHHHHH
T ss_pred HhcCHHHHHHHHHHHHHH
Confidence 456777777777666553
No 447
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=39.40 E-value=57 Score=22.32 Aligned_cols=26 Identities=23% Similarity=0.381 Sum_probs=18.9
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHH
Q 007573 373 WNTIIAAFAQHGHYEKALIFFSQMGL 398 (597)
Q Consensus 373 ~~~li~~~~~~g~~~~A~~~~~~m~~ 398 (597)
.-.+|.++...|++++|.++++++.+
T Consensus 26 hLqvI~gllqlg~~~~a~eYi~~~~~ 51 (62)
T PF14689_consen 26 HLQVIYGLLQLGKYEEAKEYIKELSK 51 (62)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 34567888888888888888877754
No 448
>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].
Probab=39.05 E-value=79 Score=19.12 Aligned_cols=28 Identities=14% Similarity=0.103 Sum_probs=21.0
Q ss_pred chHHHHHHHHHhcCCcHHHHHHHHHHHh
Q 007573 508 AVYVMLSNLYAAAGMWRDVTRVRLLMKE 535 (597)
Q Consensus 508 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 535 (597)
.+|..|+.+-...+++++|.+=|++..+
T Consensus 2 dv~~~Lgeisle~e~f~qA~~D~~~aL~ 29 (38)
T PF10516_consen 2 DVYDLLGEISLENENFEQAIEDYEKALE 29 (38)
T ss_pred cHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 4577788888888888888877777654
No 449
>KOG2300 consensus Uncharacterized conserved protein [Function unknown]
Probab=38.85 E-value=4.4e+02 Score=26.88 Aligned_cols=144 Identities=14% Similarity=0.078 Sum_probs=85.5
Q ss_pred HHHHHHHhhcCCCCh--h--------HHHHHHHHHHHcCChhHHHHHHHHhHHCC-CCCCH-------HHHHHHHH-HHh
Q 007573 255 ENARLLFERIQPKDC--V--------SFNAMIAGYAQNGVAEEALRLFSGMIKMD-MQPDD-------ATLVSVFT-ACS 315 (597)
Q Consensus 255 ~~A~~~~~~~~~~~~--~--------~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p~~-------~~~~~ll~-~~~ 315 (597)
|+++...++.+..|. . +...++.+-.-.|++.+|++-..+|.+.- -.|.. .....++. .|+
T Consensus 299 De~i~q~eklkq~d~~srilsm~km~~LE~iv~c~lv~~~~~~al~~i~dm~~w~~r~p~~~Llr~~~~~ih~LlGlys~ 378 (629)
T KOG2300|consen 299 DEAIKQTEKLKQADLMSRILSMFKMILLEHIVMCRLVRGDYVEALEEIVDMKNWCTRFPTPLLLRAHEAQIHMLLGLYSH 378 (629)
T ss_pred HHHHHHHhhcccccchhHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCchHHHHHhHHHHHHHHhhHhh
Confidence 455555555555441 1 22223333345799999999999888742 23331 12223333 345
Q ss_pred ccchhHHHHHHHHHHHHhCCCCcccHH--HHHHHHHHhcCCHHHHHHHHhccCCCChhhHHHH--------HHH--HHHc
Q 007573 316 ALQLLNEGRQSHVLVIRNGFEANVSVC--NAVITMYSRCGGILDSELAFRQIHSPNLVSWNTI--------IAA--FAQH 383 (597)
Q Consensus 316 ~~~~~~~a~~~~~~~~~~~~~~~~~~~--~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l--------i~~--~~~~ 383 (597)
..+..+.|+.-+....+.--..|...+ ..+.-.|.+.|+.++-.++++.+.++|..++..- +.+ ....
T Consensus 379 sv~~~enAe~hf~~a~k~t~~~dl~a~~nlnlAi~YL~~~~~ed~y~~ld~i~p~nt~s~ssq~l~a~~~~v~glfaf~q 458 (629)
T KOG2300|consen 379 SVNCYENAEFHFIEATKLTESIDLQAFCNLNLAISYLRIGDAEDLYKALDLIGPLNTNSLSSQRLEASILYVYGLFAFKQ 458 (629)
T ss_pred hcchHHHHHHHHHHHHHhhhHHHHHHHHHHhHHHHHHHhccHHHHHHHHHhcCCCCCCcchHHHHHHHHHHHHHHHHHHh
Confidence 667788888887777665444443332 3356678888888888888888887765544331 111 2346
Q ss_pred CCHHHHHHHHHHHHH
Q 007573 384 GHYEKALIFFSQMGL 398 (597)
Q Consensus 384 g~~~~A~~~~~~m~~ 398 (597)
|++.+|...+++-.+
T Consensus 459 n~lnEaK~~l~e~Lk 473 (629)
T KOG2300|consen 459 NDLNEAKRFLRETLK 473 (629)
T ss_pred ccHHHHHHHHHHHHh
Confidence 778888877776554
No 450
>PRK13184 pknD serine/threonine-protein kinase; Reviewed
Probab=38.80 E-value=6.3e+02 Score=28.68 Aligned_cols=345 Identities=8% Similarity=0.000 Sum_probs=0.0
Q ss_pred chHHHHHHHHHhcCChHHHHHHHhhcCC--CCcc--------hHHHHHHHHHhCCC---hhHHHHHHhhCCCCCcchHHH
Q 007573 51 FVNNAKISALSRAGKISAARQLFDQMTT--KDVI--------TWNAIITGYWQNGF---LQESKNLFQSMPVKNIVSWNC 117 (597)
Q Consensus 51 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~--------~~~~li~~~~~~g~---~~~A~~~~~~~~~~~~~~~~~ 117 (597)
+.+-++=+++.....++.|...|+++.. |+.. .--+++.--...|+ +++|+..|+.+..........
T Consensus 476 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 555 (932)
T PRK13184 476 VSCLAVPDAFLAEKLYDQALIFYRRIRESFPGRKEGYEAQFRLGITLLEKASEQGDPRDFTQALSEFSYLHGGVGAPLEY 555 (932)
T ss_pred eecccCcHHHHhhHHHHHHHHHHHHHhhcCCCcccchHHHHHhhHHHHHHHHhcCChHHHHHHHHHHHHhcCCCCCchHH
Q ss_pred HHHHHH--cCCChHHHHHHHccCC-------------------------CCChhhHHHHHHHHHcC------CChHHHHH
Q 007573 118 MIAGCI--DNDRIDDAFDYFQAMP-------------------------ERNTATYNAMISGFLKH------GRLEEATR 164 (597)
Q Consensus 118 ll~~~~--~~~~~~~A~~~~~~~~-------------------------~~~~~~~~~l~~~~~~~------g~~~~A~~ 164 (597)
|.++++ +.|++++-.+-+.-.. .....+|.-++-+.... +..+.-.+
T Consensus 556 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 635 (932)
T PRK13184 556 LGKALVYQRLGEYNEEIKSLLLALKRYSQHPEISRLRDHLVYRLHESLYKHRREALVFMLLALWIAPEKISSREEEKFLE 635 (932)
T ss_pred HhHHHHHHHhhhHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcccccchHHHHHHH
Q ss_pred HHccCCCCCchhHHHHHHHHHhCCChhHHHHHHHhc------------ccCCcchHHHHHHHHHcCCChHHHHHHHhhcC
Q 007573 165 LFEQMPRRNVISYTAMLDGFMKKGEVDKARALSDYM------------SFKNVVSWTVMITGYVKNERFCEARELFYRMP 232 (597)
Q Consensus 165 ~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m------------~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~ 232 (597)
.+..-.++.+..+-...-.-.+..+++--+..+... ..+|-.+.....-+.+..|.++-+.+..+.+.
T Consensus 636 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 715 (932)
T PRK13184 636 ILYHKQQATLFCQLDKTPLQFRSSKMELFLSFWSGFTPFLPELFQRAWDLRDYRALADIFYVACDLGNWEFFSQFSDILA 715 (932)
T ss_pred HHHhhccCCceeeccCchhhhhhhhHHHHHHHHhcCchhhHHHHHHHhhcccHHHHHHHHHHHHHhccHHHHHHHHHHHH
Q ss_pred C-CCCCchHHHHH-------------HHHHHhcCCHHHHHHHHhhcCCCChh-HHHHHHHHHHHcCChhHHHHHHHHhHH
Q 007573 233 D-YDKNVFVVTAM-------------ITGFCKVGMLENARLLFERIQPKDCV-SFNAMIAGYAQNGVAEEALRLFSGMIK 297 (597)
Q Consensus 233 ~-~~~~~~~~~~l-------------~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~ 297 (597)
. ...-..+-+.. +.++.....++++.+.+..+...... .++.++.-....++.+....+.+...+
T Consensus 716 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 795 (932)
T PRK13184 716 EVSDEITFTESIVEQKVEELMFFLKGLEALSNKEDYEKAFKHLDNTDPTLILYAFDLFAIQALLDEEGESIIQLLQLIYD 795 (932)
T ss_pred HHhhhccchHHHHhhhHHHHHHHHHHHHHHHccccHHHHHhhhhhCCHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHh
Q ss_pred CCCCCCH--HHHHHHHHHHhccchhHHHHHHHHHHHHhCCCCcccHHHHHHHHHHh-cCCHHHHHHHHhccCCCChhhHH
Q 007573 298 MDMQPDD--ATLVSVFTACSALQLLNEGRQSHVLVIRNGFEANVSVCNAVITMYSR-CGGILDSELAFRQIHSPNLVSWN 374 (597)
Q Consensus 298 ~g~~p~~--~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~g~~~~A~~~~~~~~~~~~~~~~ 374 (597)
.-..... .....-+.++.-..++++|-.++...-......+....-.|-.+|.. .++-+-|...|....++-+..-.
T Consensus 796 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 875 (932)
T PRK13184 796 YVSEEERHDHLLVYEIQAHLWNRDLKKAYKLLNRYPLDLLLDEYSEAFVLYGCYLALTEDREAAKAHFSGCREDALFPRS 875 (932)
T ss_pred ccCChhhhhhhhHHHHHHHHHhccHHHHHHHHHhCChhhhccccchHHHHHHHHHHhcCchhHHHHHHhhccccccCcch
Q ss_pred HHHHHHHHcCCHHHHHHHHHH
Q 007573 375 TIIAAFAQHGHYEKALIFFSQ 395 (597)
Q Consensus 375 ~li~~~~~~g~~~~A~~~~~~ 395 (597)
.....+...|...+...++++
T Consensus 876 ~~~~~~~~~~~~~~~~~~~~~ 896 (932)
T PRK13184 876 LDGDIFDYLGKISDNLSWWEK 896 (932)
T ss_pred hhccccchhccccccccHHHH
No 451
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=38.33 E-value=2e+02 Score=22.87 Aligned_cols=56 Identities=11% Similarity=-0.049 Sum_probs=28.0
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHH-------hcCCCCCc----hHHHHHHHHHhcCCcHHHHHHHHHH
Q 007573 478 SLLAACVINLNVELGELAAKKMR-------ELDPQNSA----VYVMLSNLYAAAGMWRDVTRVRLLM 533 (597)
Q Consensus 478 ~l~~~~~~~g~~~~a~~~~~~~~-------~~~p~~~~----~~~~l~~~~~~~g~~~~A~~~~~~~ 533 (597)
.|-.++...|++++++...++++ +++.+... +...-+.++...|+.++|.+.|+..
T Consensus 60 ~Ls~A~~~Lgry~e~L~sA~~aL~YFNRRGEL~qdeGklWIaaVfsra~Al~~~Gr~~eA~~~fr~a 126 (144)
T PF12968_consen 60 GLSGALAGLGRYDECLQSADRALRYFNRRGELHQDEGKLWIAAVFSRAVALEGLGRKEEALKEFRMA 126 (144)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHHHHHHHHH--TTSTHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHHhhccHHHHHHHHHHHHHHHhhccccccccchhHHHHHHHHHHHHHhcCChHHHHHHHHHH
Confidence 33344445555554444444443 33433322 2334455677788888888877654
No 452
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=38.27 E-value=1e+02 Score=28.43 Aligned_cols=22 Identities=18% Similarity=0.276 Sum_probs=12.6
Q ss_pred HHHHHHhhcCCHHHHHHHHhhC
Q 007573 446 CLVDILSRAGQLEKAWQITQGM 467 (597)
Q Consensus 446 ~l~~~~~~~g~~~~A~~~~~~~ 467 (597)
.+...|.+.|++++|.++|+.+
T Consensus 183 ~~A~ey~~~g~~~~A~~~l~~~ 204 (247)
T PF11817_consen 183 EMAEEYFRLGDYDKALKLLEPA 204 (247)
T ss_pred HHHHHHHHCCCHHHHHHHHHHH
Confidence 3455555666666666665554
No 453
>KOG4814 consensus Uncharacterized conserved protein [Function unknown]
Probab=38.26 E-value=3.4e+02 Score=28.73 Aligned_cols=86 Identities=8% Similarity=0.046 Sum_probs=62.3
Q ss_pred hcCCHHHHHHHHhh-CC-CCCC------HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCcH
Q 007573 453 RAGQLEKAWQITQG-MP-FEAD------TGVWGSLLAACVINLNVELGELAAKKMRELDPQNSAVYVMLSNLYAAAGMWR 524 (597)
Q Consensus 453 ~~g~~~~A~~~~~~-~~-~~p~------~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~ 524 (597)
+..++..+.+.|.. |. +..| ......+--+|....+.|.|.++++++-+.+|.++-.-.....+....|.-+
T Consensus 366 ~~~~Y~~s~~~y~~Sl~~i~~D~~~~~FaK~qR~l~~CYL~L~QLD~A~E~~~EAE~~d~~~~l~q~~~~~~~~~E~~Se 445 (872)
T KOG4814|consen 366 KMEKYVVSIRFYKLSLKDIISDNYSDRFAKIQRALQVCYLKLEQLDNAVEVYQEAEEVDRQSPLCQLLMLQSFLAEDKSE 445 (872)
T ss_pred HHHHHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHhcchH
Confidence 45566777776653 33 1111 2234555556777888999999999999999998888888888888899999
Q ss_pred HHHHHHHHHHhCCC
Q 007573 525 DVTRVRLLMKEQGV 538 (597)
Q Consensus 525 ~A~~~~~~~~~~~~ 538 (597)
+|..........-.
T Consensus 446 ~AL~~~~~~~s~~~ 459 (872)
T KOG4814|consen 446 EALTCLQKIKSSED 459 (872)
T ss_pred HHHHHHHHHHhhhc
Confidence 99988887765443
No 454
>PF15469 Sec5: Exocyst complex component Sec5
Probab=38.05 E-value=2.7e+02 Score=24.11 Aligned_cols=24 Identities=13% Similarity=0.326 Sum_probs=15.8
Q ss_pred HHHHHhccCcHHHHHHHHHHhHHh
Q 007573 411 LLSACGHAGKVNESMDLFELMVKV 434 (597)
Q Consensus 411 ll~~~~~~g~~~~a~~~~~~~~~~ 434 (597)
-+.-|.+.|+++.+...|..+...
T Consensus 92 ~L~~~i~~~dy~~~i~dY~kak~l 115 (182)
T PF15469_consen 92 NLRECIKKGDYDQAINDYKKAKSL 115 (182)
T ss_pred HHHHHHHcCcHHHHHHHHHHHHHH
Confidence 445566677777777777766553
No 455
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=37.40 E-value=1.8e+02 Score=23.44 Aligned_cols=36 Identities=11% Similarity=0.053 Sum_probs=28.0
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC
Q 007573 469 FEADTGVWGSLLAACVINLNVELGELAAKKMRELDP 504 (597)
Q Consensus 469 ~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p 504 (597)
.-|++.+...-+.+|.+.+|+..|+++++-+...-+
T Consensus 80 lVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK~K~g 115 (149)
T KOG4077|consen 80 LVPSPKVIEAALRACRRVNDFATAVRILEAIKDKCG 115 (149)
T ss_pred cCCChHHHHHHHHHHHHhccHHHHHHHHHHHHHhcc
Confidence 567888888888888888888888888887765433
No 456
>KOG2659 consensus LisH motif-containing protein [Cytoskeleton]
Probab=37.39 E-value=3.1e+02 Score=24.72 Aligned_cols=15 Identities=33% Similarity=0.470 Sum_probs=8.7
Q ss_pred hhcCCHHHHHHHHhh
Q 007573 452 SRAGQLEKAWQITQG 466 (597)
Q Consensus 452 ~~~g~~~~A~~~~~~ 466 (597)
.|.|..++|+++.+.
T Consensus 114 iR~~~~eeal~F~q~ 128 (228)
T KOG2659|consen 114 IREGKTEEALEFAQT 128 (228)
T ss_pred HHhhhHHHHHHHHHH
Confidence 455666666666544
No 457
>cd08326 CARD_CASP9 Caspase activation and recruitment domain of Caspase-9. Caspase activation and recruitment domain (CARD) similar to that found in caspase-9 (CASP9, MCH6, APAF3), which interacts with the CARD of apoptotic protease-activating factor 1 (APAF-1). Caspases are aspartate-specific cysteine proteases with functions in apoptosis and immune signaling. Initiator caspases are the first to be activated following death- or inflammation-inducing signals. Caspase-9 is the initiator caspase associated with the intrinsic or mitochondrial pathway of apoptosis, induced by many pro-apoptotic signals. Together with APAF-1, it forms the heptameric 'apoptosome' in response to the release of cytochrome c from mitochondria. Activated caspase-9 cleaves and activates downstream effector caspases, like caspase-3, caspase-6, and caspase-7, resulting in apoptosis. In general, CARDs are death domains (DDs) associated with caspases. They are known to be important in the signaling pathways for apopt
Probab=37.21 E-value=87 Score=23.07 Aligned_cols=34 Identities=12% Similarity=0.165 Sum_probs=15.6
Q ss_pred hCCChhHHHHHHHhcccCCcchHHHHHHHHHcCC
Q 007573 186 KKGEVDKARALSDYMSFKNVVSWTVMITGYVKNE 219 (597)
Q Consensus 186 ~~g~~~~A~~~~~~m~~~~~~~~~~ll~~~~~~g 219 (597)
...+.++|..+++.+...+..+|..+..++...|
T Consensus 42 ~~tr~~q~~~LLd~L~~RG~~AF~~F~~aL~~~~ 75 (84)
T cd08326 42 AGSRRDQARQLLIDLETRGKQAFPAFLSALRETG 75 (84)
T ss_pred CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC
Confidence 3334444444444444444444444444444443
No 458
>PF09477 Type_III_YscG: Bacterial type II secretion system chaperone protein (type_III_yscG); InterPro: IPR013348 YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designated Yops (Yersinia outer proteins), in Yersinia. This entry consists of YscG from Yersinia, and functionally equivalent type III secretion proteins in other species: e.g. AscG in Aeromonas and LscG in Photorhabdus luminescens.; GO: 0009405 pathogenesis; PDB: 3PH0_D 2UWJ_G 2P58_C.
Probab=36.64 E-value=2e+02 Score=22.35 Aligned_cols=79 Identities=14% Similarity=0.051 Sum_probs=42.2
Q ss_pred CChHHHHHHHhhcCCCCCCc-hHHHHHHHHHHhcCCHHHHHHHHhhcCCCChhHHHHHHHHHHHcCChhHHHHHHHHhHH
Q 007573 219 ERFCEARELFYRMPDYDKNV-FVVTAMITGFCKVGMLENARLLFERIQPKDCVSFNAMIAGYAQNGVAEEALRLFSGMIK 297 (597)
Q Consensus 219 g~~~~a~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 297 (597)
...++|..+.+.+...+... .+-...+..+...|++++|+..=.....||...|-+|- -.+.|-.+++...+.++..
T Consensus 20 HcH~EA~tIa~wL~~~~~~~E~v~lIr~~sLmNrG~Yq~ALl~~~~~~~pdL~p~~AL~--a~klGL~~~~e~~l~rla~ 97 (116)
T PF09477_consen 20 HCHQEANTIADWLEQEGEMEEVVALIRLSSLMNRGDYQEALLLPQCHCYPDLEPWAALC--AWKLGLASALESRLTRLAS 97 (116)
T ss_dssp T-HHHHHHHHHHHHHTTTTHHHHHHHHHHHHHHTT-HHHHHHHHTTS--GGGHHHHHHH--HHHCT-HHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHhhHHHHHHHHhcccCCCccHHHHHHHH--HHhhccHHHHHHHHHHHHh
Confidence 34566666666655533311 22223345566778888884444444556777766554 3467777777777776665
Q ss_pred CC
Q 007573 298 MD 299 (597)
Q Consensus 298 ~g 299 (597)
+|
T Consensus 98 ~g 99 (116)
T PF09477_consen 98 SG 99 (116)
T ss_dssp -S
T ss_pred CC
Confidence 54
No 459
>PRK13342 recombination factor protein RarA; Reviewed
Probab=36.55 E-value=4.6e+02 Score=26.41 Aligned_cols=45 Identities=22% Similarity=0.220 Sum_probs=30.5
Q ss_pred HHHHHHHHHH---cCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHhc
Q 007573 373 WNTIIAAFAQ---HGHYEKALIFFSQMGLNGFDPDGITFLSLLSACGH 417 (597)
Q Consensus 373 ~~~li~~~~~---~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~ 417 (597)
...+++++.+ .++.+.|+.++.+|.+.|..|....-..+..++..
T Consensus 230 ~~~~isa~~ks~rgsd~~aal~~l~~~l~~G~d~~~i~rrl~~~a~ed 277 (413)
T PRK13342 230 HYDLISALHKSIRGSDPDAALYYLARMLEAGEDPLFIARRLVIIASED 277 (413)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHh
Confidence 3444444444 57899999999999999988876555544444433
No 460
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=36.18 E-value=79 Score=21.60 Aligned_cols=26 Identities=19% Similarity=0.276 Sum_probs=13.8
Q ss_pred HHHHHHHHhccCcHHHHHHHHHHhHH
Q 007573 408 FLSLLSACGHAGKVNESMDLFELMVK 433 (597)
Q Consensus 408 ~~~ll~~~~~~g~~~~a~~~~~~~~~ 433 (597)
...++.++...|++++|.++.+.+.+
T Consensus 26 hLqvI~gllqlg~~~~a~eYi~~~~~ 51 (62)
T PF14689_consen 26 HLQVIYGLLQLGKYEEAKEYIKELSK 51 (62)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 34455555566666666665555543
No 461
>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]
Probab=36.10 E-value=65 Score=30.28 Aligned_cols=76 Identities=7% Similarity=0.029 Sum_probs=48.8
Q ss_pred CChHHHHHHHHHHhhcCCHHHHHHHHhhCC-CCC-CHHHHHH-HHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHH
Q 007573 439 PSSEHYTCLVDILSRAGQLEKAWQITQGMP-FEA-DTGVWGS-LLAACVINLNVELGELAAKKMRELDPQNSAVYVMLS 514 (597)
Q Consensus 439 p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~-l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~ 514 (597)
-|+..|...+.--.+.|.+.+...++.++. ..| |+..|-. -..-+...++++.+..++.+.++.+|++|..+....
T Consensus 105 ~D~k~w~~y~~Y~~k~k~y~~~~nI~~~~l~khP~nvdlWI~~c~~e~~~~ani~s~Ra~f~~glR~N~~~p~iw~eyf 183 (435)
T COG5191 105 NDPKIWSQYAAYVIKKKMYGEMKNIFAECLTKHPLNVDLWIYCCAFELFEIANIESSRAMFLKGLRMNSRSPRIWIEYF 183 (435)
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceeeeeeccchhhhhccHHHHHHHHHhhhccCCCCchHHHHHH
Confidence 345555544444445555666666665544 334 5556644 222356788999999999999999999988775443
No 462
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=35.85 E-value=75 Score=31.87 Aligned_cols=102 Identities=11% Similarity=0.095 Sum_probs=60.7
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHCCCCCChHHHHHH-HHHHhccCcHHHHHHHHHHhHHhcCCCCC-hHHHHHHHHHHhhc
Q 007573 377 IAAFAQHGHYEKALIFFSQMGLNGFDPDGITFLSL-LSACGHAGKVNESMDLFELMVKVYGIIPS-SEHYTCLVDILSRA 454 (597)
Q Consensus 377 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l-l~~~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~ 454 (597)
+..+...+.++.|+.++.+.++. .||...|-.. ..++.+.+++..|+.=+..+++. .|+ ...|..=..++-+.
T Consensus 11 an~~l~~~~fd~avdlysKaI~l--dpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~---dP~~~K~Y~rrg~a~m~l 85 (476)
T KOG0376|consen 11 ANEALKDKVFDVAVDLYSKAIEL--DPNCAIYFANRALAHLKVESFGGALHDALKAIEL---DPTYIKAYVRRGTAVMAL 85 (476)
T ss_pred HhhhcccchHHHHHHHHHHHHhc--CCcceeeechhhhhheeechhhhHHHHHHhhhhc---CchhhheeeeccHHHHhH
Confidence 34455667888888888888864 6765544333 36777788887777766666543 243 22222223334445
Q ss_pred CCHHHHHHHHhhCC-CCCCHHHHHHHHHHH
Q 007573 455 GQLEKAWQITQGMP-FEADTGVWGSLLAAC 483 (597)
Q Consensus 455 g~~~~A~~~~~~~~-~~p~~~~~~~l~~~~ 483 (597)
+++.+|...|+... ..|+..-....+.-|
T Consensus 86 ~~~~~A~~~l~~~~~l~Pnd~~~~r~~~Ec 115 (476)
T KOG0376|consen 86 GEFKKALLDLEKVKKLAPNDPDATRKIDEC 115 (476)
T ss_pred HHHHHHHHHHHHhhhcCcCcHHHHHHHHHH
Confidence 56666766666554 566666555555554
No 463
>KOG0403 consensus Neoplastic transformation suppressor Pdcd4/MA-3, contains MA3 domain [Signal transduction mechanisms]
Probab=35.54 E-value=4.8e+02 Score=26.30 Aligned_cols=26 Identities=19% Similarity=0.233 Sum_probs=18.7
Q ss_pred HHHHHHHHhCCChhHHHHHHhhCCCC
Q 007573 85 NAIITGYWQNGFLQESKNLFQSMPVK 110 (597)
Q Consensus 85 ~~li~~~~~~g~~~~A~~~~~~~~~~ 110 (597)
|-.+.-|...|+..+|.+..+++..+
T Consensus 218 n~~l~eyv~~getrea~rciR~L~vs 243 (645)
T KOG0403|consen 218 NGNLIEYVEIGETREACRCIRELGVS 243 (645)
T ss_pred HHHHHHHHHcccHHHHHHHHHHhCCC
Confidence 44566677788888888887777654
No 464
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=34.98 E-value=1.2e+02 Score=19.35 Aligned_cols=34 Identities=9% Similarity=0.194 Sum_probs=21.0
Q ss_pred HHHcCChhHHHHHHHHhHHCCCCCCHHHHHHHHH
Q 007573 279 YAQNGVAEEALRLFSGMIKMDMQPDDATLVSVFT 312 (597)
Q Consensus 279 ~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~ 312 (597)
..+.|-.+++..++++|.+.|+.-+...+..++.
T Consensus 12 Ak~~GlI~~~~~~l~~l~~~g~~is~~l~~~~L~ 45 (48)
T PF11848_consen 12 AKRRGLISEVKPLLDRLQQAGFRISPKLIEEILR 45 (48)
T ss_pred HHHcCChhhHHHHHHHHHHcCcccCHHHHHHHHH
Confidence 3455666667777777777776666665555443
No 465
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=34.91 E-value=7.4e+02 Score=28.30 Aligned_cols=23 Identities=17% Similarity=0.021 Sum_probs=16.0
Q ss_pred HHHHHHHhCCChhHHHHHHhhCC
Q 007573 86 AIITGYWQNGFLQESKNLFQSMP 108 (597)
Q Consensus 86 ~li~~~~~~g~~~~A~~~~~~~~ 108 (597)
..|.-+...+++.+|..+.++-.
T Consensus 699 ~~ir~~Ld~~~Y~~Af~~~RkhR 721 (928)
T PF04762_consen 699 AGIRKLLDAKDYKEAFELCRKHR 721 (928)
T ss_pred HHHHHHHhhccHHHHHHHHHHhc
Confidence 34555667788888887777654
No 466
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=33.98 E-value=5e+02 Score=28.79 Aligned_cols=130 Identities=9% Similarity=0.087 Sum_probs=83.3
Q ss_pred HHHhcCCHHHHHHHHhccCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHhccCcHHHHHHH
Q 007573 348 MYSRCGGILDSELAFRQIHSPNLVSWNTIIAAFAQHGHYEKALIFFSQMGLNGFDPDGITFLSLLSACGHAGKVNESMDL 427 (597)
Q Consensus 348 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~ 427 (597)
....+|+++.|.+.-.++. +..+|..|+......|+.+-|...|++.+. |..|--.|.-.|+.++-.+.
T Consensus 652 LaLe~gnle~ale~akkld--d~d~w~rLge~Al~qgn~~IaEm~yQ~~kn---------fekLsfLYliTgn~eKL~Km 720 (1202)
T KOG0292|consen 652 LALECGNLEVALEAAKKLD--DKDVWERLGEEALRQGNHQIAEMCYQRTKN---------FEKLSFLYLITGNLEKLSKM 720 (1202)
T ss_pred eehhcCCHHHHHHHHHhcC--cHHHHHHHHHHHHHhcchHHHHHHHHHhhh---------hhheeEEEEEeCCHHHHHHH
Confidence 4556789999988877765 566899999999999999999888887653 33333345566777776665
Q ss_pred HHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 007573 428 FELMVKVYGIIPSSEHYTCLVDILSRAGQLEKAWQITQGMPFEADTGVWGSLLAACVINLNVELGELAAKKMRE 501 (597)
Q Consensus 428 ~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 501 (597)
.+.+..+ -|.... + ..-.-.|+.++=.+++......| ..|. .-..+|.-++|.++.++.-.
T Consensus 721 ~~iae~r----~D~~~~--~-qnalYl~dv~ervkIl~n~g~~~--layl----ta~~~G~~~~ae~l~ee~~~ 781 (1202)
T KOG0292|consen 721 MKIAEIR----NDATGQ--F-QNALYLGDVKERVKILENGGQLP--LAYL----TAAAHGLEDQAEKLGEELEK 781 (1202)
T ss_pred HHHHHhh----hhhHHH--H-HHHHHhccHHHHHHHHHhcCccc--HHHH----HHhhcCcHHHHHHHHHhhcc
Confidence 5544332 221111 1 11123578888888877765222 1111 12356778888888888766
No 467
>PF11123 DNA_Packaging_2: DNA packaging protein ; InterPro: IPR024345 This entry represents Gp18 (gene 18 product), also known as DNA maturase A, from T7-like bacteriophages. In Bacteriophage T3, this protein is required for DNA packaging and functions in a complex with Gp19 [].
Probab=33.83 E-value=75 Score=22.43 Aligned_cols=29 Identities=21% Similarity=0.264 Sum_probs=16.3
Q ss_pred hHHHHHHHccCC---CCChhhHHHHHHHHHcC
Q 007573 128 IDDAFDYFQAMP---ERNTATYNAMISGFLKH 156 (597)
Q Consensus 128 ~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~ 156 (597)
.+-|..++..+. .+++..||++...+.|.
T Consensus 13 tEmA~~mL~DLr~dekRsPQLYnAI~k~L~RH 44 (82)
T PF11123_consen 13 TEMAQQMLADLRDDEKRSPQLYNAIGKLLDRH 44 (82)
T ss_pred HHHHHHHHHHhcchhhcChHHHHHHHHHHHHc
Confidence 344555555555 44666666666655544
No 468
>smart00777 Mad3_BUB1_I Mad3/BUB1 hoMad3/BUB1 homology region 1. Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of the binding of BUB1 and MAD3 to CDC20p.
Probab=33.62 E-value=2.5e+02 Score=22.57 Aligned_cols=40 Identities=15% Similarity=0.105 Sum_probs=30.6
Q ss_pred HHHHHHHHHhcCC--CCCchHHHHHHHHHhcCCcHHHHHHHH
Q 007573 492 GELAAKKMRELDP--QNSAVYVMLSNLYAAAGMWRDVTRVRL 531 (597)
Q Consensus 492 a~~~~~~~~~~~p--~~~~~~~~l~~~~~~~g~~~~A~~~~~ 531 (597)
...+|..+.+.+. ..+..|...+..+...|++.+|.++++
T Consensus 82 p~~if~~L~~~~IG~~~AlfYe~~A~~lE~~g~~~~A~~iy~ 123 (125)
T smart00777 82 PRELFQFLYSKGIGTKLALFYEEWAQLLEAAGRYKKADEVYQ 123 (125)
T ss_pred HHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 5667777776544 446778888888999999999998886
No 469
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=33.33 E-value=49 Score=26.76 Aligned_cols=32 Identities=28% Similarity=0.346 Sum_probs=24.0
Q ss_pred HHcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHH
Q 007573 381 AQHGHYEKALIFFSQMGLNGFDPDGITFLSLLSA 414 (597)
Q Consensus 381 ~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~ 414 (597)
...|.-..|..+|++|.+.|-+||. |+.|+..
T Consensus 106 R~ygsk~DaY~VF~kML~~G~pPdd--W~~Ll~~ 137 (140)
T PF11663_consen 106 RAYGSKTDAYAVFRKMLERGNPPDD--WDALLKE 137 (140)
T ss_pred hhhccCCcHHHHHHHHHhCCCCCcc--HHHHHHH
Confidence 3457777899999999999988875 4555544
No 470
>KOG2581 consensus 26S proteasome regulatory complex, subunit RPN3/PSMD3 [Posttranslational modification, protein turnover, chaperones]
Probab=32.95 E-value=5e+02 Score=25.80 Aligned_cols=90 Identities=11% Similarity=0.021 Sum_probs=61.1
Q ss_pred HHHhhcCCHHHHHHHHhhCC----CCC----CHHHHHHHHHHHHhcCCHHHHHHHHHHHHh--cCCCC--CchHHHHHHH
Q 007573 449 DILSRAGQLEKAWQITQGMP----FEA----DTGVWGSLLAACVINLNVELGELAAKKMRE--LDPQN--SAVYVMLSNL 516 (597)
Q Consensus 449 ~~~~~~g~~~~A~~~~~~~~----~~p----~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~~p~~--~~~~~~l~~~ 516 (597)
..|...|+...-..++.... .+. -....|.|+..|...+.++.|..+..+..- ...++ ......++..
T Consensus 177 l~~E~~~~l~~~rs~l~~~lrtAtLrhd~e~qavLiN~LLr~yL~n~lydqa~~lvsK~~~pe~~snne~ARY~yY~GrI 256 (493)
T KOG2581|consen 177 LSYELEGRLADIRSFLHALLRTATLRHDEEGQAVLINLLLRNYLHNKLYDQADKLVSKSVYPEAASNNEWARYLYYLGRI 256 (493)
T ss_pred HHHHhhcchHHHHHHHHHHHHHhhhcCcchhHHHHHHHHHHHHhhhHHHHHHHHHhhcccCccccccHHHHHHHHHHhhH
Confidence 34556666666555554322 222 244678888999999999999988877642 12222 3445677888
Q ss_pred HHhcCCcHHHHHHHHHHHhCCC
Q 007573 517 YAAAGMWRDVTRVRLLMKEQGV 538 (597)
Q Consensus 517 ~~~~g~~~~A~~~~~~~~~~~~ 538 (597)
..-++++..|.+.+-....+.+
T Consensus 257 kaiqldYssA~~~~~qa~rkap 278 (493)
T KOG2581|consen 257 KAIQLDYSSALEYFLQALRKAP 278 (493)
T ss_pred HHhhcchhHHHHHHHHHHHhCc
Confidence 8889999999999988876554
No 471
>KOG2034 consensus Vacuolar sorting protein PEP3/VPS18 [Intracellular trafficking, secretion, and vesicular transport]
Probab=32.90 E-value=7.2e+02 Score=27.58 Aligned_cols=51 Identities=10% Similarity=0.183 Sum_probs=29.4
Q ss_pred HHHHcCCChHHHHHHHccCCCCChhhHHHHHHHHHcCCChHHHHHHHccCC
Q 007573 120 AGCIDNDRIDDAFDYFQAMPERNTATYNAMISGFLKHGRLEEATRLFEQMP 170 (597)
Q Consensus 120 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 170 (597)
+.|.+.|+++.|.++-..-+..=..++-.-...|...+++..|-+++.++.
T Consensus 366 k~yLd~g~y~kAL~~ar~~p~~le~Vl~~qAdf~f~~k~y~~AA~~yA~t~ 416 (911)
T KOG2034|consen 366 KTYLDKGEFDKALEIARTRPDALETVLLKQADFLFQDKEYLRAAEIYAETL 416 (911)
T ss_pred HHHHhcchHHHHHHhccCCHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhh
Confidence 345667777777776654311111233444456666677777777776663
No 472
>cd08326 CARD_CASP9 Caspase activation and recruitment domain of Caspase-9. Caspase activation and recruitment domain (CARD) similar to that found in caspase-9 (CASP9, MCH6, APAF3), which interacts with the CARD of apoptotic protease-activating factor 1 (APAF-1). Caspases are aspartate-specific cysteine proteases with functions in apoptosis and immune signaling. Initiator caspases are the first to be activated following death- or inflammation-inducing signals. Caspase-9 is the initiator caspase associated with the intrinsic or mitochondrial pathway of apoptosis, induced by many pro-apoptotic signals. Together with APAF-1, it forms the heptameric 'apoptosome' in response to the release of cytochrome c from mitochondria. Activated caspase-9 cleaves and activates downstream effector caspases, like caspase-3, caspase-6, and caspase-7, resulting in apoptosis. In general, CARDs are death domains (DDs) associated with caspases. They are known to be important in the signaling pathways for apopt
Probab=32.76 E-value=1.5e+02 Score=21.90 Aligned_cols=40 Identities=18% Similarity=0.281 Sum_probs=25.6
Q ss_pred HhcCCHHHHHHHHhhcCCCChhHHHHHHHHHHHcCChhHH
Q 007573 249 CKVGMLENARLLFERIQPKDCVSFNAMIAGYAQNGVAEEA 288 (597)
Q Consensus 249 ~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 288 (597)
+...+.+++.++++.++.++..+|.....++...|...-|
T Consensus 41 ~~~tr~~q~~~LLd~L~~RG~~AF~~F~~aL~~~~~~~LA 80 (84)
T cd08326 41 AAGSRRDQARQLLIDLETRGKQAFPAFLSALRETGQTDLA 80 (84)
T ss_pred cCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCchHHH
Confidence 3444566677777777777777777777776666654433
No 473
>PRK14700 recombination factor protein RarA; Provisional
Probab=32.59 E-value=4.4e+02 Score=25.04 Aligned_cols=99 Identities=11% Similarity=0.058 Sum_probs=0.0
Q ss_pred CCChhHHHHHHHHHHHc---CChhHHHHHHHHhHHCCCCCCHHHHHHHHHHHhccc-----hhHHHHHHHHHHHHhCCCC
Q 007573 266 PKDCVSFNAMIAGYAQN---GVAEEALRLFSGMIKMDMQPDDATLVSVFTACSALQ-----LLNEGRQSHVLVIRNGFEA 337 (597)
Q Consensus 266 ~~~~~~~~~li~~~~~~---g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~-----~~~~a~~~~~~~~~~~~~~ 337 (597)
.++-..+-.+|+++.++ .+++.|+-.+.+|++.|-.|....-..++.+.-..| -+..|...++.....|+|-
T Consensus 120 Dk~gd~HYd~iSAf~KSiRGSDpDAAlYyLArml~~GEDp~~IaRRLii~AsEDIGlAdP~al~~a~aa~~A~~~iG~PE 199 (300)
T PRK14700 120 HREGKEFYEQLSAFHKSVRGTDPDAAIFWLSVMLDNGVDPLVIARRMLCIASEDIGNADPQALRVAMDAWNAYEKLGMPE 199 (300)
T ss_pred cCCcchhHHHHHHHHHHhhcCCccHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHhCChH
Q ss_pred cccHHHHHHHHHHhcCCHHHHHHHHhc
Q 007573 338 NVSVCNAVITMYSRCGGILDSELAFRQ 364 (597)
Q Consensus 338 ~~~~~~~l~~~~~~~g~~~~A~~~~~~ 364 (597)
-.......+-.++.+-+-..+...+..
T Consensus 200 a~i~La~aviyLA~aPKSNs~y~A~~~ 226 (300)
T PRK14700 200 GRLVLAQAAIYLAVAPKSNACYKALAQ 226 (300)
T ss_pred HHHHHHHHHHHHHcCCCchHHHHHHHH
No 474
>KOG2300 consensus Uncharacterized conserved protein [Function unknown]
Probab=32.44 E-value=5.6e+02 Score=26.19 Aligned_cols=154 Identities=13% Similarity=0.052 Sum_probs=95.8
Q ss_pred HHHHcCCHHHHHHHHHHHHHCC-CCCChH-------HHHHHHH-HHhccCcHHHHHHHHHHhHHhcCCCCChH--HHHHH
Q 007573 379 AFAQHGHYEKALIFFSQMGLNG-FDPDGI-------TFLSLLS-ACGHAGKVNESMDLFELMVKVYGIIPSSE--HYTCL 447 (597)
Q Consensus 379 ~~~~~g~~~~A~~~~~~m~~~g-~~p~~~-------~~~~ll~-~~~~~g~~~~a~~~~~~~~~~~~~~p~~~--~~~~l 447 (597)
.-.-.|++.+|++-+..|.+-- -.|.+. -...++. -|...+.++.|...|....+. --..|.. .-..+
T Consensus 332 c~lv~~~~~~al~~i~dm~~w~~r~p~~~Llr~~~~~ih~LlGlys~sv~~~enAe~hf~~a~k~-t~~~dl~a~~nlnl 410 (629)
T KOG2300|consen 332 CRLVRGDYVEALEEIVDMKNWCTRFPTPLLLRAHEAQIHMLLGLYSHSVNCYENAEFHFIEATKL-TESIDLQAFCNLNL 410 (629)
T ss_pred HHHHhCCHHHHHHHHHHHHHHHHhCCchHHHHHhHHHHHHHHhhHhhhcchHHHHHHHHHHHHHh-hhHHHHHHHHHHhH
Confidence 3345799999999888887521 133311 1223333 344668899999888887764 2223322 22345
Q ss_pred HHHHhhcCCHHHHHHHHhhCCCCCCHHHHH------H--HHHH--HHhcCCHHHHHHHHHHHHhcC-CCC-----CchHH
Q 007573 448 VDILSRAGQLEKAWQITQGMPFEADTGVWG------S--LLAA--CVINLNVELGELAAKKMRELD-PQN-----SAVYV 511 (597)
Q Consensus 448 ~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~------~--l~~~--~~~~g~~~~a~~~~~~~~~~~-p~~-----~~~~~ 511 (597)
.-.|.+.|+-+.-.++++.+. +|+..++. + ++.+ ...++++.+|...+++.++.. ..+ .-.+.
T Consensus 411 Ai~YL~~~~~ed~y~~ld~i~-p~nt~s~ssq~l~a~~~~v~glfaf~qn~lnEaK~~l~e~Lkmanaed~~rL~a~~Lv 489 (629)
T KOG2300|consen 411 AISYLRIGDAEDLYKALDLIG-PLNTNSLSSQRLEASILYVYGLFAFKQNDLNEAKRFLRETLKMANAEDLNRLTACSLV 489 (629)
T ss_pred HHHHHHhccHHHHHHHHHhcC-CCCCCcchHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhcchhhHHHHHHHHHH
Confidence 677889999888888888775 22221111 1 1122 347889999999999998764 222 33355
Q ss_pred HHHHHHHhcCCcHHHHHHHHHHH
Q 007573 512 MLSNLYAAAGMWRDVTRVRLLMK 534 (597)
Q Consensus 512 ~l~~~~~~~g~~~~A~~~~~~~~ 534 (597)
.|+.+....|+-.++.+...-..
T Consensus 490 LLs~v~lslgn~~es~nmvrpam 512 (629)
T KOG2300|consen 490 LLSHVFLSLGNTVESRNMVRPAM 512 (629)
T ss_pred HHHHHHHHhcchHHHHhccchHH
Confidence 67778888888888776655443
No 475
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=31.92 E-value=2.1e+02 Score=23.70 Aligned_cols=44 Identities=14% Similarity=0.098 Sum_probs=19.9
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHhccC
Q 007573 376 IIAAFAQHGHYEKALIFFSQMGLNGFDPDGITFLSLLSACGHAG 419 (597)
Q Consensus 376 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g 419 (597)
++..+...++.-.|.++++++.+.+...+..|....+..+...|
T Consensus 26 vl~~L~~~~~~~sAeei~~~l~~~~p~islaTVYr~L~~l~e~G 69 (145)
T COG0735 26 VLELLLEADGHLSAEELYEELREEGPGISLATVYRTLKLLEEAG 69 (145)
T ss_pred HHHHHHhcCCCCCHHHHHHHHHHhCCCCCHhHHHHHHHHHHHCC
Confidence 33444444444555555555555444444444444444443333
No 476
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=31.40 E-value=1.7e+02 Score=26.96 Aligned_cols=24 Identities=13% Similarity=0.228 Sum_probs=16.7
Q ss_pred HHHHHHhccCcHHHHHHHHHHhHH
Q 007573 410 SLLSACGHAGKVNESMDLFELMVK 433 (597)
Q Consensus 410 ~ll~~~~~~g~~~~a~~~~~~~~~ 433 (597)
.+..-|.+.|++++|.++|+.+..
T Consensus 183 ~~A~ey~~~g~~~~A~~~l~~~~~ 206 (247)
T PF11817_consen 183 EMAEEYFRLGDYDKALKLLEPAAS 206 (247)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHH
Confidence 455667777788888877777644
No 477
>PRK09169 hypothetical protein; Validated
Probab=31.22 E-value=1.2e+03 Score=29.52 Aligned_cols=473 Identities=10% Similarity=0.015 Sum_probs=251.7
Q ss_pred cchHHHHHHHHHhcCChHHHHHHHhhcC--------C-CCcchHHHHHHHHHhCCChhHHHHHHhhC----CC-------
Q 007573 50 VFVNNAKISALSRAGKISAARQLFDQMT--------T-KDVITWNAIITGYWQNGFLQESKNLFQSM----PV------- 109 (597)
Q Consensus 50 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~--------~-~~~~~~~~li~~~~~~g~~~~A~~~~~~~----~~------- 109 (597)
...+..+.+.+.|.-+-....+.+..+. . -+......+++++++-.+.+.+...-+.+ -.
T Consensus 122 ~~~~a~l~n~lsK~~d~~aC~~a~a~ia~q~~~~~~~~l~~~~v~~lLNalSKWP~~~~c~~aa~~lA~~la~~~~l~~a 201 (2316)
T PRK09169 122 LAQLAHLGNKLSKYPDRPACMAAIAWIAGQLLDALREALDAISFALLLNALSKWPDNTDCQTAAEQLADRLASDSRLLQA 201 (2316)
T ss_pred HHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHhccCCCchHHHHHHHHHHHHhccCHHHHHh
Confidence 3345555666655544433333332221 1 34556667777777655444333322222 11
Q ss_pred CCcchHHHHHHHHHcCCChHHHHHHHccCC-----------CCChhhHHHHHHHHHcCCChHHHHHHHccC----CC---
Q 007573 110 KNIVSWNCMIAGCIDNDRIDDAFDYFQAMP-----------ERNTATYNAMISGFLKHGRLEEATRLFEQM----PR--- 171 (597)
Q Consensus 110 ~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~-----------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~----~~--- 171 (597)
-+......++.++++--+.......-..+. .-+......+++++.|-.+-+.+...-+.+ ..
T Consensus 202 l~~q~va~~lnalSKwp~~~~cr~a~~~lA~rL~~~~~l~~~l~~q~va~~LNAlSKWp~~~~c~~aa~~lA~rla~~~~ 281 (2316)
T PRK09169 202 MDAQEVANALNALSKWPDSPRCRNAAERLAERLADEPGLLQSLRAQEVALLLNALSKWPDDEACRQAAEALAARLAREPG 281 (2316)
T ss_pred cchHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHhcChHHHHhcCHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHhcChh
Confidence 166666777777777665544333333222 224556677888888876655444332222 11
Q ss_pred ----CCchhHHHHHHHHHhCCChhHHHHHHHhc-----------ccCCcchHHHHHHHHHcCCChHHHH----HHHhhcC
Q 007573 172 ----RNVISYTAMLDGFMKKGEVDKARALSDYM-----------SFKNVVSWTVMITGYVKNERFCEAR----ELFYRMP 232 (597)
Q Consensus 172 ----~~~~~~~~li~~~~~~g~~~~A~~~~~~m-----------~~~~~~~~~~ll~~~~~~g~~~~a~----~~~~~~~ 232 (597)
-|.......++++++-.+-+.+......+ ..-+..-....+.++++-.+.+.+. .+-+.+.
T Consensus 282 lr~~~~~Q~vAN~LNALSKwp~~~~cr~aa~~LA~rL~~~~~l~~~~~aQ~vAN~LNALSKWp~~~~c~~Aa~~LA~rL~ 361 (2316)
T PRK09169 282 LRLALDPQGVANALNALSKWPDTEACRQAAEALAERLAQERGLLQAMNAQAVANALNALSKWPDEEACRAAAEALAARLA 361 (2316)
T ss_pred hhhhcCHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHhChhhhhhCCHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHH
Confidence 24555667788888876554433322222 1235566777788888877655432 2222222
Q ss_pred C-----CCCCchHHHHHHHHHHhcCCHHH----HHHHHhhcCC-------CChhHHHHHHHHHHHcCChhHHHHH---H-
Q 007573 233 D-----YDKNVFVVTAMITGFCKVGMLEN----ARLLFERIQP-------KDCVSFNAMIAGYAQNGVAEEALRL---F- 292 (597)
Q Consensus 233 ~-----~~~~~~~~~~l~~~~~~~g~~~~----A~~~~~~~~~-------~~~~~~~~li~~~~~~g~~~~A~~~---~- 292 (597)
+ -.-+..-....+++++|.++-+. |..+..++.. -|..-....+.++.+-+.-+.+... +
T Consensus 362 ~~~~l~~~~npQelANaLnALSKwp~~~~cr~AA~aLA~rL~~~~~l~~~fnaQ~vANaLnALsKWp~~~~c~~aa~aLA 441 (2316)
T PRK09169 362 RDAGLRRALNAQELANALNALSKWPDEEACRAAAEALAARLARDAGLRAALNAQGVANALNALSKWPGAEACRQAALALA 441 (2316)
T ss_pred hChhhhhhCCHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHhchhhhhhcChHHHHHHHHHHhcCCCchHHHHHHHHHH
Confidence 1 11234445667788888776543 2333333322 2555666778888887665433222 2
Q ss_pred HHhHHC---CCCCCHHHHHHHHHHHhccchhHHHH----HHHHHHHHh---CCCCcccHHHHHHHHHHhcCCHHHHHHH-
Q 007573 293 SGMIKM---DMQPDDATLVSVFTACSALQLLNEGR----QSHVLVIRN---GFEANVSVCNAVITMYSRCGGILDSELA- 361 (597)
Q Consensus 293 ~~m~~~---g~~p~~~~~~~ll~~~~~~~~~~~a~----~~~~~~~~~---~~~~~~~~~~~l~~~~~~~g~~~~A~~~- 361 (597)
...... .-..+..-....++++++-.+.+... .+...+... .-..+..-....+.+++|-++.+.+...
T Consensus 442 ~rl~~~a~lr~~fn~QeLaN~LnALsKWp~~~~c~~aa~~LA~rl~~~~~l~~af~~Q~lAN~LnALsKwp~~~~c~~aA 521 (2316)
T PRK09169 442 ARLAADARLRNALSAQELANALNALSKWPDEAACRRAAEALAARLAGDAELRQALDAQGLANALNALSKWPDSDACRAAA 521 (2316)
T ss_pred HHHhhchhhhhhCCHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhcChhhhhhcChHHHHHHHHHHhcCCccHHHHHHH
Confidence 222111 01334566777888888766544222 222222111 1134566677788899988876654322
Q ss_pred ---Hhcc-------CCCChhhHHHHHHHHHHcCCHHH----HHHHHHHHHHCC---CCCChHHHHHHHHHHhccCcHHH-
Q 007573 362 ---FRQI-------HSPNLVSWNTIIAAFAQHGHYEK----ALIFFSQMGLNG---FDPDGITFLSLLSACGHAGKVNE- 423 (597)
Q Consensus 362 ---~~~~-------~~~~~~~~~~li~~~~~~g~~~~----A~~~~~~m~~~g---~~p~~~~~~~ll~~~~~~g~~~~- 423 (597)
...+ ..-+..-....+.++.+-.+.+. |..+...+.... -..+..-....+.++++-+....
T Consensus 522 ~aLA~rla~~~~l~~afnpQ~lAN~LnALSKWP~~~~cr~AA~aLA~~la~~~~l~~~~naQ~LAN~LnALSKWP~~~ac 601 (2316)
T PRK09169 522 EALADRLAQDPALLQAMDAQGLANTLNALSKWPEEPDCRAAAEALAARLARRPDLRSALNAQGLANLLNALSKWPDEDAC 601 (2316)
T ss_pred HHHHHHHhcChhhhhhcCHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHhcChhhhhccCHHHHHHHHHHHhhCCCchhH
Confidence 2211 13466677788888888776432 333444433221 23466778889999999876433
Q ss_pred ---HHHHHHHhHHhcCC--CCChHHHHHHHHHHhhcCCHHHHHHHH----hhCC------CCCCHHHHHHHHHHHHhcCC
Q 007573 424 ---SMDLFELMVKVYGI--IPSSEHYTCLVDILSRAGQLEKAWQIT----QGMP------FEADTGVWGSLLAACVINLN 488 (597)
Q Consensus 424 ---a~~~~~~~~~~~~~--~p~~~~~~~l~~~~~~~g~~~~A~~~~----~~~~------~~p~~~~~~~l~~~~~~~g~ 488 (597)
+..+...+.+..+. ..++.-+...++++.+-.+.+...... ..+. ..-+..-+..+++++.+-.+
T Consensus 602 r~Aa~aLA~rla~~~~~~~afn~Q~lAN~LnALSKWP~~~~cr~Aa~aLA~~L~~~~~l~~af~aQ~LaN~LnALSKWp~ 681 (2316)
T PRK09169 602 RAAAEALAGRLARDAGLLDAFNAQDLANLLNGLSKWPDEDDCRQAAEALAARLLRDAGLPRAFDAQGLANALNALSKWPD 681 (2316)
T ss_pred HHHHHHHHHHHHhccccccccCHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHhhcchhHHhcCcHHHHHHHHHHHhCCC
Confidence 33344443332111 235666777888888887666543322 2221 12345567777788888777
Q ss_pred HHHHHHHHHHHHh---c-----CCCCCchHHHHHHHHHhcCC
Q 007573 489 VELGELAAKKMRE---L-----DPQNSAVYVMLSNLYAAAGM 522 (597)
Q Consensus 489 ~~~a~~~~~~~~~---~-----~p~~~~~~~~l~~~~~~~g~ 522 (597)
.+.+.+....+.+ . +--++......++++.+--.
T Consensus 682 ~~~c~~Aa~aLA~rl~~~~~~~~~f~aq~lAn~LnAlsKwp~ 723 (2316)
T PRK09169 682 EAACRAAALALAERLAREAGLRQAFDAQGVANALNALSKWPE 723 (2316)
T ss_pred cHHHHHHHHHHHHHhhcchhhhhhcCHHHHHHHHHHHHhccC
Confidence 6654444443321 1 22235556667777766444
No 478
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=31.10 E-value=5.4e+02 Score=25.58 Aligned_cols=54 Identities=6% Similarity=0.009 Sum_probs=28.8
Q ss_pred HHHHcCChhHHHHHHHHhHHCCCCCCHH--HHHHHHHHHh--ccchhHHHHHHHHHHHH
Q 007573 278 GYAQNGVAEEALRLFSGMIKMDMQPDDA--TLVSVFTACS--ALQLLNEGRQSHVLVIR 332 (597)
Q Consensus 278 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~--~~~~ll~~~~--~~~~~~~a~~~~~~~~~ 332 (597)
.+...+++..|.++|..+... ++++.. .+..+..+|. ..-++++|...++....
T Consensus 140 ~l~n~~~y~aA~~~l~~l~~r-l~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~ 197 (379)
T PF09670_consen 140 ELFNRYDYGAAARILEELLRR-LPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLK 197 (379)
T ss_pred HHHhcCCHHHHHHHHHHHHHh-CCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 344677777788777777765 444443 2222333332 23344555555555444
No 479
>PF02847 MA3: MA3 domain; InterPro: IPR003891 This entry represents the MI domain (after MA-3 and eIF4G), it is a protein-protein interaction module of ~130 amino acids [, , ]. It appears in several translation factors and is found in: One copy in plant and animal eIF4G 1 and 2 (DAP-5/NAT1/p97) Two copies in the animal programmed cell death protein 4 (PDCD4) or MA-3 that is induced during programmed cell death and inhibits neoplastic transformation Four tandem-repeated copies in a group of uncharacterised plant proteins The MI domain consists of seven alpha-helices, which pack into a globular form. The packing arrangement consists of repeating pairs of antiparallel helices packed one upon the other such that a superhelical axis is generated perpendicular to the alpha-helical axes []. The MI domain has also been named MA3 domain.; PDB: 2ION_A 2IOL_B 2NSZ_A 3EIQ_C 2HM8_A 2KZT_B 2IOS_A 2RG8_B 2ZU6_E 3EIJ_A ....
Probab=30.89 E-value=2e+02 Score=22.32 Aligned_cols=21 Identities=19% Similarity=0.441 Sum_probs=9.5
Q ss_pred HHHHHHHcCChhHHHHHHHHh
Q 007573 275 MIAGYAQNGVAEEALRLFSGM 295 (597)
Q Consensus 275 li~~~~~~g~~~~A~~~~~~m 295 (597)
++..|...|+.++|...+.++
T Consensus 8 ~l~ey~~~~d~~ea~~~l~el 28 (113)
T PF02847_consen 8 ILMEYFSSGDVDEAVECLKEL 28 (113)
T ss_dssp HHHHHHHHT-HHHHHHHHHHT
T ss_pred HHHHHhcCCCHHHHHHHHHHh
Confidence 334444445555555544443
No 480
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=30.86 E-value=1.8e+02 Score=23.16 Aligned_cols=24 Identities=8% Similarity=0.117 Sum_probs=14.4
Q ss_pred CcchHHHHHHHHHcCCChHHHHHH
Q 007573 111 NIVSWNCMIAGCIDNDRIDDAFDY 134 (597)
Q Consensus 111 ~~~~~~~ll~~~~~~~~~~~A~~~ 134 (597)
|...+..|-.++...|++++++.-
T Consensus 54 DA~chA~Ls~A~~~Lgry~e~L~s 77 (144)
T PF12968_consen 54 DAFCHAGLSGALAGLGRYDECLQS 77 (144)
T ss_dssp HHHHHHHHHHHHHHTT-HHHHHHH
T ss_pred HHHHHHHHHHHHHhhccHHHHHHH
Confidence 555666666677777776665543
No 481
>PRK11639 zinc uptake transcriptional repressor; Provisional
Probab=30.48 E-value=1.8e+02 Score=24.84 Aligned_cols=37 Identities=16% Similarity=0.156 Sum_probs=15.9
Q ss_pred CcHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCC
Q 007573 419 GKVNESMDLFELMVKVYGIIPSSEHYTCLVDILSRAGQ 456 (597)
Q Consensus 419 g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~ 456 (597)
+..-.|.++++.+.+. +...+..|-..-++.+.+.|-
T Consensus 39 ~~hlSa~eI~~~L~~~-~~~is~aTVYRtL~~L~e~Gl 75 (169)
T PRK11639 39 PGAISAYDLLDLLREA-EPQAKPPTVYRALDFLLEQGF 75 (169)
T ss_pred CCCCCHHHHHHHHHhh-CCCCCcchHHHHHHHHHHCCC
Confidence 3344455555555443 333343332233344444443
No 482
>PF12069 DUF3549: Protein of unknown function (DUF3549); InterPro: IPR021936 This family of proteins is functionally uncharacterised. This protein is found in bacteria. Proteins in this family are about 340 amino acids in length. This protein has a conserved LDE sequence motif.
Probab=30.22 E-value=5.2e+02 Score=25.10 Aligned_cols=24 Identities=25% Similarity=0.101 Sum_probs=11.3
Q ss_pred CChHHHHHHHHHHhccCcHHHHHH
Q 007573 403 PDGITFLSLLSACGHAGKVNESMD 426 (597)
Q Consensus 403 p~~~~~~~ll~~~~~~g~~~~a~~ 426 (597)
||......++++.+..........
T Consensus 228 ~d~~~~~a~lRAls~~~~~~~~~~ 251 (340)
T PF12069_consen 228 PDLELLSALLRALSSAPASDLVAI 251 (340)
T ss_pred CCHHHHHHHHHHHcCCCchhHHHH
Confidence 455555555555554444333333
No 483
>PF09454 Vps23_core: Vps23 core domain; InterPro: IPR017916 The Endosomal Sorting Complex Required for Transport (ESCRT) complexes form the machinery driving protein sorting from endosomes to lysosomes. ESCRT complexes are central to receptor down-regulation, lysosome biogenesis, and budding of HIV. Yeast ESCRT-I consists of three protein subunits, VPS23, VPS28, and VPS37. In humans, ESCRT-I comprises TSG101, VPS28, and one of four potential human VPS37 homologues. The main role of ESCRT-I is to recognise ubiquitinated cargo via the UEV domain of the VPS23/TSG101 subunit. The assembly of the ESCRT-I complex is directed by the C-terminal steadiness box (SB) of VPS23, the N-terminal half of VPS28, and the C-terminal half of VPS37. The structure is primarily composed of three long, parallel helical hairpins, each corresponding to a different subunit. The additional domains and motifs extending beyond the core serve as gripping tools for ESCRT-I critical functions [, ]. This entry represents the Steadiness box domain.; PDB: 2CAZ_A 2F66_D 2F6M_A 2P22_A.
Probab=29.90 E-value=1.3e+02 Score=20.88 Aligned_cols=48 Identities=17% Similarity=0.122 Sum_probs=29.4
Q ss_pred CChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHh
Q 007573 368 PNLVSWNTIIAAFAQHGHYEKALIFFSQMGLNGFDPDGITFLSLLSACG 416 (597)
Q Consensus 368 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~ 416 (597)
+....++.++...++..-.++++..+.++...|. .+..+|..-++.++
T Consensus 6 ~~~~l~~Ql~el~Aed~AieDtiy~L~~al~~g~-I~~d~~lK~vR~La 53 (65)
T PF09454_consen 6 AEDPLSNQLYELVAEDHAIEDTIYYLDRALQRGS-IDLDTFLKQVRSLA 53 (65)
T ss_dssp -SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS-S-HHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHH
Confidence 4455666777777776677777777777777763 44555554444443
No 484
>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones]
Probab=28.99 E-value=5.3e+02 Score=24.82 Aligned_cols=22 Identities=14% Similarity=0.149 Sum_probs=10.5
Q ss_pred HHHHHHHHhhcCCHHHHHHHHh
Q 007573 444 YTCLVDILSRAGQLEKAWQITQ 465 (597)
Q Consensus 444 ~~~l~~~~~~~g~~~~A~~~~~ 465 (597)
+.....-|++-|+.+.|.+.+.
T Consensus 107 ~~~kaeYycqigDkena~~~~~ 128 (393)
T KOG0687|consen 107 MLRKAEYYCQIGDKENALEALR 128 (393)
T ss_pred HHHHHHHHHHhccHHHHHHHHH
Confidence 3334444555555555554443
No 485
>PF10475 DUF2450: Protein of unknown function N-terminal domain (DUF2450) ; InterPro: IPR019515 This entry represents Vacuolar protein sorting-associated protein 54, and is thought to be involved in retrograde transport from early and late endosomes to late Golgi found in eukaryotes, but its function is not known.
Probab=28.62 E-value=3.6e+02 Score=25.56 Aligned_cols=52 Identities=15% Similarity=0.088 Sum_probs=30.7
Q ss_pred HHHHHHhcCCHHHHHHHHhhcCCCChhHHHHHHHHHHHcCChhHHHHHHHHhHH
Q 007573 244 MITGFCKVGMLENARLLFERIQPKDCVSFNAMIAGYAQNGVAEEALRLFSGMIK 297 (597)
Q Consensus 244 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 297 (597)
++..+.+.+++.+....+..+. .+..-...+..+...|++..|++++.+..+
T Consensus 104 Il~~~rkr~~l~~ll~~L~~i~--~v~~~~~~l~~ll~~~dy~~Al~li~~~~~ 155 (291)
T PF10475_consen 104 ILRLQRKRQNLKKLLEKLEQIK--TVQQTQSRLQELLEEGDYPGALDLIEECQQ 155 (291)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 4444555555555555444442 233344556667788888888888877664
No 486
>cd08323 CARD_APAF1 Caspase activation and recruitment domain similar to that found in Apoptotic Protease-Activating Factor 1. Caspase activation and recruitment domain (CARD) similar to that found in apoptotic protease-activating factor 1 (APAF-1), which is an activator of caspase-9. APAF-1 contains WD-40 repeats, a CARD, and an ATPase domain. Upon stimulation, APAF-1, together with caspase-9, forms the heptameric 'apoptosome', which leads to the processing and activation of caspase-9, starting a caspase cascade which leads to apoptosis. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including PYRIN and DED (Death Effect
Probab=28.08 E-value=2.5e+02 Score=20.84 Aligned_cols=56 Identities=13% Similarity=0.103 Sum_probs=26.1
Q ss_pred HccCCCCCchhHHHHHHHHHhCCChhHHHHHHHhcccCCcchHHHHHHHHHcCCCh
Q 007573 166 FEQMPRRNVISYTAMLDGFMKKGEVDKARALSDYMSFKNVVSWTVMITGYVKNERF 221 (597)
Q Consensus 166 ~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~ll~~~~~~g~~ 221 (597)
++.+.+.++.+-...=..-.+..+.++|..+++.+...+..+|..+..++-..|..
T Consensus 20 ld~L~~~gvlt~~~~e~I~~~~t~~~qa~~Lld~L~trG~~Af~~F~~aL~~~~~~ 75 (86)
T cd08323 20 MDHMISDGVLTLDEEEKVKSKATQKEKAVMLINMILTKDNHAYVSFYNALLHEGYK 75 (86)
T ss_pred HHHHHhcCCCCHHHHHHHHcCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCh
Confidence 33333333333333333333444455555555555555555555555555444433
No 487
>COG5187 RPN7 26S proteasome regulatory complex component, contains PCI domain [Posttranslational modification, protein turnover, chaperones]
Probab=28.03 E-value=4.5e+02 Score=24.75 Aligned_cols=115 Identities=10% Similarity=0.079 Sum_probs=0.0
Q ss_pred HHHHHHHHHhHHhcC--------CCCChHHHHHHHHHHh-hcCCHHHHHHHHhhCC-CCCCHHHHHHHHHHHHhcCCHHH
Q 007573 422 NESMDLFELMVKVYG--------IIPSSEHYTCLVDILS-RAGQLEKAWQITQGMP-FEADTGVWGSLLAACVINLNVEL 491 (597)
Q Consensus 422 ~~a~~~~~~~~~~~~--------~~p~~~~~~~l~~~~~-~~g~~~~A~~~~~~~~-~~p~~~~~~~l~~~~~~~g~~~~ 491 (597)
+..-.+++-+.++ + ++.|...++.|+.-=. +...++++++-.++-. ..--...|..+..-|++.+|.+.
T Consensus 55 ~~maplYkyL~E~-~n~kt~a~~ikfD~~~~n~l~kkneeki~Elde~i~~~eedngE~e~~ea~~n~aeyY~qi~D~~n 133 (412)
T COG5187 55 KCMAPLYKYLAEK-GNPKTSASVIKFDRGRMNTLLKKNEEKIEELDERIREKEEDNGETEGSEADRNIAEYYCQIMDIQN 133 (412)
T ss_pred hhhhHHHHHHHhc-cCCcccchheehhhHHHHHHHHhhHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHhhhhh
Q ss_pred HHHHHHHHHh------cCCCCCchHHHHHHHHHhcCCcHHHHHHHHHHHhCC
Q 007573 492 GELAAKKMRE------LDPQNSAVYVMLSNLYAAAGMWRDVTRVRLLMKEQG 537 (597)
Q Consensus 492 a~~~~~~~~~------~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 537 (597)
+.+...+.++ ...+-.-.-..|+..|..+.-.++-++..+.|.++|
T Consensus 134 g~~~~~~~~~~a~stg~KiDv~l~kiRlg~~y~d~~vV~e~lE~~~~~iEkG 185 (412)
T COG5187 134 GFEWMRRLMRDAMSTGLKIDVFLCKIRLGLIYGDRKVVEESLEVADDIIEKG 185 (412)
T ss_pred HHHHHHHHHHHHHhcccchhhHHHHHHHHHhhccHHHHHHHHHHHHHHHHhC
No 488
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=27.30 E-value=6.1e+02 Score=24.99 Aligned_cols=52 Identities=13% Similarity=0.247 Sum_probs=29.0
Q ss_pred HHHhccCcHHHHHHHHHHhHHhcCCCC--ChHHHHHHHHHHh-hcCCHHHHHHHHhhC
Q 007573 413 SACGHAGKVNESMDLFELMVKVYGIIP--SSEHYTCLVDILS-RAGQLEKAWQITQGM 467 (597)
Q Consensus 413 ~~~~~~g~~~~a~~~~~~~~~~~~~~p--~~~~~~~l~~~~~-~~g~~~~A~~~~~~~ 467 (597)
..+.+.|-+..|.++.+-+.. +.| |+.....+|+.|+ ++++++--.++.+..
T Consensus 111 ~~L~~RG~~rTAlE~~KlLls---Ldp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~ 165 (360)
T PF04910_consen 111 QSLGRRGCWRTALEWCKLLLS---LDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESP 165 (360)
T ss_pred HHHHhcCcHHHHHHHHHHHHh---cCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhH
Confidence 455666677777776666653 333 3444444555554 556666555555543
No 489
>TIGR02710 CRISPR-associated protein, TIGR02710 family. Members of this family are found, exclusively in the vicinity of CRISPR repeats and other CRISPR-associated (cas) genes, in Methanothermobacter thermautotrophicus (Archaea), Thermus thermophilus (Deinococcus-Thermus), Chloroflexus aurantiacus (Chloroflexi), and Thermomicrobium roseum (Thermomicrobia).
Probab=27.08 E-value=6.3e+02 Score=25.07 Aligned_cols=26 Identities=8% Similarity=-0.205 Sum_probs=15.7
Q ss_pred HHHHcCCHHHHHHHHHHHHHCCCCCC
Q 007573 379 AFAQHGHYEKALIFFSQMGLNGFDPD 404 (597)
Q Consensus 379 ~~~~~g~~~~A~~~~~~m~~~g~~p~ 404 (597)
.+.+.+++..|.++|+++......|+
T Consensus 139 ~l~n~~dy~aA~~~~~~L~~r~l~~~ 164 (380)
T TIGR02710 139 RAINAFDYLFAHARLETLLRRLLSAV 164 (380)
T ss_pred HHHHhcChHHHHHHHHHHHhcccChh
Confidence 34556667777777777666544443
No 490
>COG4259 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=26.53 E-value=2.4e+02 Score=21.51 Aligned_cols=45 Identities=16% Similarity=0.029 Sum_probs=0.0
Q ss_pred CHHHHHHHHHHHHhcCCCC-CchHHHHHHHHHhcCCcHHHHHHHHH
Q 007573 488 NVELGELAAKKMRELDPQN-SAVYVMLSNLYAAAGMWRDVTRVRLL 532 (597)
Q Consensus 488 ~~~~a~~~~~~~~~~~p~~-~~~~~~l~~~~~~~g~~~~A~~~~~~ 532 (597)
+.+.-++.++++...+-.- |.....|+-.|++.|+-|.|.+-|+.
T Consensus 52 Q~~~le~~~ek~~ak~~~vpPG~HAhLGlLys~~G~~e~a~~eFet 97 (121)
T COG4259 52 QTAALEKYLEKIGAKNGAVPPGYHAHLGLLYSNSGKDEQAVREFET 97 (121)
T ss_pred HHHHHHHHHHHHhhcCCCCCCcHHHHHHHHHhhcCChHHHHHHHHH
No 491
>KOG2422 consensus Uncharacterized conserved protein [Function unknown]
Probab=26.20 E-value=7.8e+02 Score=25.85 Aligned_cols=15 Identities=27% Similarity=0.450 Sum_probs=9.7
Q ss_pred CchHHHHHHHHHhcC
Q 007573 507 SAVYVMLSNLYAAAG 521 (597)
Q Consensus 507 ~~~~~~l~~~~~~~g 521 (597)
..++..+..+|....
T Consensus 483 ~pal~~lv~lY~~r~ 497 (665)
T KOG2422|consen 483 LPALMLLVKLYANRN 497 (665)
T ss_pred chHHHHHHHHHHhhh
Confidence 455777777776644
No 492
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=26.18 E-value=9.1e+02 Score=26.61 Aligned_cols=107 Identities=13% Similarity=0.066 Sum_probs=57.6
Q ss_pred CCCCCHHHHHHHHHHHhccchhHHHHHHHHHHHHhCCC--CcccHHHHHHHHHHhcCCHHHHHHHHhcc-------CCCC
Q 007573 299 DMQPDDATLVSVFTACSALQLLNEGRQSHVLVIRNGFE--ANVSVCNAVITMYSRCGGILDSELAFRQI-------HSPN 369 (597)
Q Consensus 299 g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-------~~~~ 369 (597)
++..+......++..+ .|+...+..+++.+...... .+... =..+.+.+.+... ...+
T Consensus 192 ~v~I~deaL~~La~~s--~GD~R~lln~Le~a~~~~~~~~~~~i~-----------It~~~~~e~l~~~~~~ydk~gd~h 258 (725)
T PRK13341 192 KVDLEPEAEKHLVDVA--NGDARSLLNALELAVESTPPDEDGLID-----------ITLAIAEESIQQRAVLYDKEGDAH 258 (725)
T ss_pred ccCCCHHHHHHHHHhC--CCCHHHHHHHHHHHHHhcccCCCCcee-----------ccHHHHHHHHHHhhhhcccCCCCC
Confidence 3445555555555443 68888888887776532110 00000 0112222322221 1222
Q ss_pred hhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHhccC
Q 007573 370 LVSWNTIIAAFAQHGHYEKALIFFSQMGLNGFDPDGITFLSLLSACGHAG 419 (597)
Q Consensus 370 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g 419 (597)
...-.+++.+ .+.++++.|+.++.+|.+.|..|....-..++.+...-|
T Consensus 259 yd~Isa~~ks-irgsD~daAl~~la~ml~~Gedp~~I~Rrl~~~asEdig 307 (725)
T PRK13341 259 FDTISAFIKS-LRGSDPDAALYWLARMVEAGEDPRFIFRRMLIAASEDVG 307 (725)
T ss_pred HHHHHHHHHH-HhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhccC
Confidence 2333334443 346889999999999999998887666555555554444
No 493
>KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=26.10 E-value=1.5e+02 Score=31.65 Aligned_cols=24 Identities=13% Similarity=0.173 Sum_probs=16.2
Q ss_pred HHHHHHHHhcCCcHHHHHHHHHHH
Q 007573 511 VMLSNLYAAAGMWRDVTRVRLLMK 534 (597)
Q Consensus 511 ~~l~~~~~~~g~~~~A~~~~~~~~ 534 (597)
..|...+.+.|..+.-.++|+...
T Consensus 348 mkLn~LlgrKG~leklq~YWdV~~ 371 (1226)
T KOG4279|consen 348 MKLNSLLGRKGALEKLQEYWDVAT 371 (1226)
T ss_pred HHHHHHhhccchHHHHHHHHhHHH
Confidence 345666777787777777776543
No 494
>cd02680 MIT_calpain7_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=25.63 E-value=1.2e+02 Score=21.78 Aligned_cols=15 Identities=20% Similarity=-0.128 Sum_probs=7.2
Q ss_pred CCHHHHHHHHHHHHh
Q 007573 487 LNVELGELAAKKMRE 501 (597)
Q Consensus 487 g~~~~a~~~~~~~~~ 501 (597)
|++++|+.+|..+++
T Consensus 20 gny~eA~~lY~~ale 34 (75)
T cd02680 20 GNAEEAIELYTEAVE 34 (75)
T ss_pred hhHHHHHHHHHHHHH
Confidence 444555555444443
No 495
>cd07153 Fur_like Ferric uptake regulator(Fur) and related metalloregulatory proteins; typically iron-dependent, DNA-binding repressors and activators. Ferric uptake regulator (Fur) and related metalloregulatory proteins are iron-dependent, DNA-binding repressors and activators mainly involved in iron metabolism. A general model for Fur repression under iron-rich conditions is that activated Fur (a dimer having one Fe2+ coordinated per monomer) binds to specific DNA sequences (Fur boxes) in the promoter region of iron-responsive genes, hindering access of RNA polymerase, and repressing transcription. Positive regulation by Fur can be direct or indirect, as in the Fur repression of an anti-sense regulatory small RNA. Some members sense metal ions other than Fe2+. For example, the zinc uptake regulator (Zur) responds to Zn2+, the manganese uptake regulator (Mur) responds to Mn2+, and the nickel uptake regulator (Nur) responds to Ni2+. Other members sense signals other than metal ions.
Probab=24.91 E-value=1.5e+02 Score=23.11 Aligned_cols=45 Identities=16% Similarity=0.101 Sum_probs=28.7
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHhccCc
Q 007573 376 IIAAFAQHGHYEKALIFFSQMGLNGFDPDGITFLSLLSACGHAGK 420 (597)
Q Consensus 376 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~ 420 (597)
++..+...+..-.|.++++++.+.+..++..|....+..+...|-
T Consensus 6 Il~~l~~~~~~~sa~ei~~~l~~~~~~i~~~TVYR~L~~L~~~Gl 50 (116)
T cd07153 6 ILEVLLESDGHLTAEEIYERLRKKGPSISLATVYRTLELLEEAGL 50 (116)
T ss_pred HHHHHHhCCCCCCHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCC
Confidence 344455555566677777777777666666666666666666554
No 496
>COG5290 IkappaB kinase complex, IKAP component [Transcription]
Probab=24.74 E-value=9.6e+02 Score=26.38 Aligned_cols=27 Identities=19% Similarity=0.186 Sum_probs=14.6
Q ss_pred chHHHHHHHHHhC--CChhHHHHHHhhCC
Q 007573 82 ITWNAIITGYWQN--GFLQESKNLFQSMP 108 (597)
Q Consensus 82 ~~~~~li~~~~~~--g~~~~A~~~~~~~~ 108 (597)
....+.|.+|.-. |+...|+.......
T Consensus 777 ~~~qtiitayl~~np~n~~aal~~is~l~ 805 (1243)
T COG5290 777 ESIQTIITAYLIGNPGNGKAALMRISPLS 805 (1243)
T ss_pred hhHHHHHHHHHhcCCcchHHHHhhhhhhh
Confidence 3455666666543 55556655544443
No 497
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=24.44 E-value=5.5e+02 Score=23.46 Aligned_cols=193 Identities=10% Similarity=-0.004 Sum_probs=101.3
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHhc-cCcHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhh
Q 007573 375 TIIAAFAQHGHYEKALIFFSQMGLNGFDPDGITFLSLLSACGH-AGKVNESMDLFELMVKVYGIIPSSEHYTCLVDILSR 453 (597)
Q Consensus 375 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~-~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 453 (597)
.++...-+.|+++++.+.++++...+...+..--+.+-.+|-. .|....+++++..+.....-..+ .....++.-|..
T Consensus 6 ~~Aklaeq~eRy~dmv~~mk~~~~~~~eLt~eERnLlsvayKn~i~~~R~s~R~l~~~e~~~~~~~~-~~~~~~i~~yk~ 84 (236)
T PF00244_consen 6 YLAKLAEQAERYDDMVEYMKQLIEMNPELTEEERNLLSVAYKNVIGSRRASWRILSSIEQKEENKGN-EKQVKLIKDYKK 84 (236)
T ss_dssp HHHHHHHHTTHHHHHHHHHHHHHHTSS---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhccccchHHHHhhhhHhhhhcccch-hHHHHHHHHHHH
Confidence 3556677889999999999999988766666555555555422 24455566666655543222212 222233333321
Q ss_pred c------CCHHHHHHHHhhCC----CCCCHHHHHHHHHH--HH---h--cC-----CHHHHHHHHHHHHh-----cCCCC
Q 007573 454 A------GQLEKAWQITQGMP----FEADTGVWGSLLAA--CV---I--NL-----NVELGELAAKKMRE-----LDPQN 506 (597)
Q Consensus 454 ~------g~~~~A~~~~~~~~----~~p~~~~~~~l~~~--~~---~--~g-----~~~~a~~~~~~~~~-----~~p~~ 506 (597)
. .--.+...+++... ..+...+|-.-+.| |. . .| -.+.|...|+++.+ +.|.+
T Consensus 85 kie~EL~~~C~eii~lId~~Lip~~~~~eskvfy~KmkgDyyRYlaE~~~~~~~~~~~~~a~~aY~~A~~~a~~~L~~~~ 164 (236)
T PF00244_consen 85 KIEDELIDICNEIIRLIDKSLIPSATSPESKVFYYKMKGDYYRYLAEFDSGDEKKEAAEKALEAYEEALEIAKKELPPTH 164 (236)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCHHHS-SHHHHHHHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHHHHHHHHHHSCTTS
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHhccccccccccccchhhHHHHHHHHHhhhhHHHHHhcccCCCC
Confidence 1 12245555665543 11222233222222 11 1 11 24678888888775 45666
Q ss_pred CchHHHHH----HHHHhcCCcHHHHHHHHHHHhCCCccCCCeeEEEECCEEEEEEeCCCCCcchHHHHHHHHHHHHHHhh
Q 007573 507 SAVYVMLS----NLYAAAGMWRDVTRVRLLMKEQGVTKQCAYSWIEIGNKVHYFLGGDMSHPCIDKIHLELKRASVQMKS 582 (597)
Q Consensus 507 ~~~~~~l~----~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~ 582 (597)
|.-+...+ ..|--.|+.++|.++-+...+..+...... +.....+....++-|.+.+..
T Consensus 165 p~rLgl~LN~svF~yei~~~~~~A~~ia~~afd~a~~~l~~l-----------------~e~~~~d~~~ilqlLrdNl~l 227 (236)
T PF00244_consen 165 PLRLGLALNYSVFYYEILNDPEKAIEIAKQAFDEAISELDTL-----------------SEESYKDSTLILQLLRDNLTL 227 (236)
T ss_dssp HHHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHHHHHHGGGGS-----------------HTTTHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhhhccc-----------------chhhhHHHHHHHHHHHHHHHh
Confidence 55443333 235669999999999888876543211110 123355566666666666666
Q ss_pred cCC
Q 007573 583 VDD 585 (597)
Q Consensus 583 ~~~ 585 (597)
|..
T Consensus 228 W~~ 230 (236)
T PF00244_consen 228 WTS 230 (236)
T ss_dssp HTT
T ss_pred ccc
Confidence 554
No 498
>COG5108 RPO41 Mitochondrial DNA-directed RNA polymerase [Transcription]
Probab=24.37 E-value=5.5e+02 Score=27.41 Aligned_cols=69 Identities=19% Similarity=0.348 Sum_probs=37.9
Q ss_pred HHHHHHHcCCChHHHHHHHhhcCCCCCC----chHHHHHHHHHHhcCCHH------HHHHHHhhcC-CCChhHHHHHHHH
Q 007573 210 VMITGYVKNERFCEARELFYRMPDYDKN----VFVVTAMITGFCKVGMLE------NARLLFERIQ-PKDCVSFNAMIAG 278 (597)
Q Consensus 210 ~ll~~~~~~g~~~~a~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~------~A~~~~~~~~-~~~~~~~~~li~~ 278 (597)
+++.+|...|++..+.++++........ ...+|..++...+.|.++ .|.+.+++.. .-|..||..|+.+
T Consensus 33 sl~eacv~n~~~~rs~~ll~s~~~~~~~~k~~l~~~nlyi~~~~q~~sf~l~~~~~~~~~~lq~a~ln~d~~t~all~~~ 112 (1117)
T COG5108 33 SLFEACVYNGDFLRSKQLLKSFIDHNKGDKILLPMINLYIREIIQRGSFELTDVLSNAKELLQQARLNGDSLTYALLCQA 112 (1117)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcCCcCCeeehhHHHHHHHHHHhcCCccHHHHHHHHHHHHHHhhcCCcchHHHHHHHh
Confidence 6777777777777777777766553322 234555556666666542 3333333322 2344555555544
No 499
>cd08332 CARD_CASP2 Caspase activation and recruitment domain of Caspase-2. Caspase activation and recruitment domain (CARD) similar to that found in caspase-2. Caspases are aspartate-specific cysteine proteases with functions in apoptosis and immune signaling. Caspase-2 (also known as ICH1, NEDD2, or CASP2) is one of the most evolutionarily conserved caspases, and plays a role in apoptosis, DNA damage response, cell cycle regulation, and tumor suppression. It is localized in the nucleus and exhibits properties of both an initiator and an effector caspase. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including PYRIN and
Probab=24.24 E-value=2.4e+02 Score=21.04 Aligned_cols=30 Identities=7% Similarity=0.124 Sum_probs=14.7
Q ss_pred CChhHHHHHHHhcccCCcchHHHHHHHHHc
Q 007573 188 GEVDKARALSDYMSFKNVVSWTVMITGYVK 217 (597)
Q Consensus 188 g~~~~A~~~~~~m~~~~~~~~~~ll~~~~~ 217 (597)
.+.+++..+++.+...+..+|..+..++..
T Consensus 48 t~~~k~~~Lld~L~~RG~~AF~~F~~aL~~ 77 (90)
T cd08332 48 TSFSQNVALLNLLPKRGPRAFSAFCEALRE 77 (90)
T ss_pred CcHHHHHHHHHHHHHhChhHHHHHHHHHHh
Confidence 344455555555544455555555555433
No 500
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=24.17 E-value=2.8e+02 Score=19.96 Aligned_cols=85 Identities=11% Similarity=0.068 Sum_probs=0.0
Q ss_pred HHHHccC-CCCChhhHHHHHHHHHcCCChHHHHHHHccCCCCCchhHHHHHHHHHhCCChhHHHHHHHhcccCCcch-HH
Q 007573 132 FDYFQAM-PERNTATYNAMISGFLKHGRLEEATRLFEQMPRRNVISYTAMLDGFMKKGEVDKARALSDYMSFKNVVS-WT 209 (597)
Q Consensus 132 ~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~-~~ 209 (597)
..+++.+ ..++..+-...+..+++.++.+-...+.+-+..+|+.+-...+.++.+.|+.+....+.+.+..++... -.
T Consensus 2 ~~L~~~l~~~~~~~vr~~a~~~L~~~~~~~~~~~L~~~l~d~~~~vr~~a~~aL~~i~~~~~~~~L~~~l~~~~~~~vr~ 81 (88)
T PF13646_consen 2 PALLQLLQNDPDPQVRAEAARALGELGDPEAIPALIELLKDEDPMVRRAAARALGRIGDPEAIPALIKLLQDDDDEVVRE 81 (88)
T ss_dssp HHHHHHHHTSSSHHHHHHHHHHHHCCTHHHHHHHHHHHHTSSSHHHHHHHHHHHHCCHHHHTHHHHHHHHTC-SSHHHHH
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHcCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHcCCCcHHHHH
Q ss_pred HHHHHHH
Q 007573 210 VMITGYV 216 (597)
Q Consensus 210 ~ll~~~~ 216 (597)
..+.+++
T Consensus 82 ~a~~aL~ 88 (88)
T PF13646_consen 82 AAAEALG 88 (88)
T ss_dssp HHHHHHH
T ss_pred HHHhhcC
Done!