Query 007573
Match_columns 597
No_of_seqs 678 out of 3824
Neff 11.1
Searched_HMMs 29240
Date Mon Mar 25 05:08:27 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007573.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/007573hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2xpi_A Anaphase-promoting comp 100.0 5.8E-42 2E-46 363.3 35.5 475 58-537 61-580 (597)
2 2xpi_A Anaphase-promoting comp 100.0 1.3E-40 4.4E-45 353.0 38.2 469 47-518 81-595 (597)
3 1w3b_A UDP-N-acetylglucosamine 100.0 1.4E-27 4.9E-32 238.3 36.9 367 151-522 7-388 (388)
4 1w3b_A UDP-N-acetylglucosamine 100.0 3E-26 1E-30 228.7 39.9 351 180-536 5-368 (388)
5 4g26_A Pentatricopeptide repea 100.0 2.8E-27 9.6E-32 240.1 21.9 184 270-454 27-223 (501)
6 4g26_A Pentatricopeptide repea 99.9 5.9E-26 2E-30 230.4 21.3 199 286-485 7-222 (501)
7 2gw1_A Mitochondrial precursor 99.9 1.2E-23 4E-28 218.3 30.3 419 114-537 8-479 (514)
8 2gw1_A Mitochondrial precursor 99.9 1.6E-23 5.5E-28 217.2 28.1 428 82-513 7-489 (514)
9 3fp2_A TPR repeat-containing p 99.9 2E-23 6.9E-28 217.8 28.0 416 82-535 26-490 (537)
10 2y4t_A DNAJ homolog subfamily 99.9 2.6E-22 8.8E-27 204.4 34.6 333 174-532 26-405 (450)
11 3fp2_A TPR repeat-containing p 99.9 1.1E-22 3.7E-27 212.2 28.6 428 49-511 24-500 (537)
12 2y4t_A DNAJ homolog subfamily 99.9 1.2E-21 4.1E-26 199.5 30.6 361 140-525 23-443 (450)
13 3ieg_A DNAJ homolog subfamily 99.9 7.6E-19 2.6E-23 172.6 35.1 305 204-536 2-335 (359)
14 3ieg_A DNAJ homolog subfamily 99.9 2.4E-19 8.1E-24 176.3 30.6 310 173-520 2-353 (359)
15 3hym_B Cell division cycle pro 99.8 3.2E-18 1.1E-22 166.1 29.6 285 237-524 21-322 (330)
16 1b89_A Protein (clathrin heavy 99.8 2.1E-18 7E-23 166.8 26.9 287 61-392 14-304 (449)
17 1xi4_A Clathrin heavy chain; a 99.8 6.7E-16 2.3E-20 166.0 45.9 349 142-531 984-1340(1630)
18 1xi4_A Clathrin heavy chain; a 99.8 1.5E-15 5.1E-20 163.3 48.4 370 56-461 991-1375(1630)
19 3hym_B Cell division cycle pro 99.8 7.6E-18 2.6E-22 163.5 28.0 264 267-535 20-298 (330)
20 1fch_A Peroxisomal targeting s 99.8 1.9E-18 6.5E-23 170.7 23.6 299 215-533 35-356 (368)
21 1b89_A Protein (clathrin heavy 99.8 1.2E-18 4E-23 168.5 20.0 286 155-467 15-308 (449)
22 3mkr_A Coatomer subunit epsilo 99.8 3.2E-17 1.1E-21 155.4 29.0 268 217-528 11-286 (291)
23 2xm6_A Protein corresponding t 99.8 1.5E-16 5.3E-21 163.3 35.4 365 141-519 37-452 (490)
24 2ooe_A Cleavage stimulation fa 99.8 2.4E-16 8.1E-21 163.6 37.0 401 111-537 12-493 (530)
25 4g1t_A Interferon-induced prot 99.8 6E-17 2E-21 165.8 28.8 380 143-547 51-470 (472)
26 2xm6_A Protein corresponding t 99.8 1.2E-15 4E-20 156.7 38.4 352 171-538 36-434 (490)
27 1fch_A Peroxisomal targeting s 99.8 2.8E-17 9.7E-22 162.2 23.7 281 185-500 36-357 (368)
28 2ooe_A Cleavage stimulation fa 99.8 1.1E-15 3.9E-20 158.5 35.1 401 80-505 12-495 (530)
29 4eqf_A PEX5-related protein; a 99.8 2.2E-17 7.6E-22 162.8 20.7 270 238-532 65-352 (365)
30 3cv0_A Peroxisome targeting si 99.8 4E-17 1.4E-21 158.1 20.5 273 239-534 22-313 (327)
31 4g1t_A Interferon-induced prot 99.7 1.4E-16 4.8E-21 163.0 22.4 374 111-514 50-471 (472)
32 4eqf_A PEX5-related protein; a 99.7 1.2E-16 4.2E-21 157.5 21.2 232 268-537 64-311 (365)
33 3cv0_A Peroxisome targeting si 99.7 3.4E-15 1.2E-19 144.5 24.8 224 206-433 22-268 (327)
34 3mkr_A Coatomer subunit epsilo 99.7 1.2E-14 3.9E-19 137.7 26.9 244 151-399 7-264 (291)
35 2pl2_A Hypothetical conserved 99.7 1.5E-15 5.1E-20 137.4 18.4 194 336-533 2-211 (217)
36 3uq3_A Heat shock protein STI1 99.7 1.4E-14 4.7E-19 134.9 22.1 226 270-537 6-237 (258)
37 3uq3_A Heat shock protein STI1 99.6 1.5E-14 5.1E-19 134.6 20.1 235 238-515 5-255 (258)
38 3spa_A Mtrpol, DNA-directed RN 99.6 3.1E-16 1.1E-20 163.5 9.2 131 336-467 124-262 (1134)
39 3e4b_A ALGK; tetratricopeptide 99.6 1.7E-14 5.8E-19 145.8 19.3 369 121-535 12-420 (452)
40 1xnf_A Lipoprotein NLPI; TPR, 99.6 5.7E-14 2E-18 132.1 21.2 239 283-530 19-269 (275)
41 3spa_A Mtrpol, DNA-directed RN 99.6 9.5E-16 3.3E-20 159.9 9.1 147 238-384 127-286 (1134)
42 3u4t_A TPR repeat-containing p 99.6 4.9E-14 1.7E-18 132.4 19.7 247 240-521 5-269 (272)
43 2ho1_A Type 4 fimbrial biogene 99.6 1.9E-13 6.5E-18 126.8 21.7 197 339-537 37-239 (252)
44 3e4b_A ALGK; tetratricopeptide 99.6 1.7E-13 5.8E-18 138.5 22.8 337 181-538 10-389 (452)
45 2vq2_A PILW, putative fimbrial 99.6 2.8E-13 9.5E-18 123.0 21.3 198 338-537 7-212 (225)
46 2q7f_A YRRB protein; TPR, prot 99.6 7.4E-14 2.5E-18 128.6 16.7 197 338-537 22-223 (243)
47 1ouv_A Conserved hypothetical 99.6 2.1E-12 7E-17 121.4 26.2 226 267-538 4-253 (273)
48 2h6f_A Protein farnesyltransfe 99.5 5E-13 1.7E-17 130.8 21.4 244 270-520 98-366 (382)
49 2q7f_A YRRB protein; TPR, prot 99.5 1.1E-13 3.8E-18 127.4 15.8 213 268-519 22-239 (243)
50 3u4t_A TPR repeat-containing p 99.5 1.1E-12 3.6E-17 123.2 22.7 241 206-483 4-265 (272)
51 2ho1_A Type 4 fimbrial biogene 99.5 9.5E-13 3.3E-17 122.0 22.0 205 269-511 37-247 (252)
52 3vtx_A MAMA; tetratricopeptide 99.5 8.3E-13 2.8E-17 115.9 20.2 166 369-537 4-171 (184)
53 2pl2_A Hypothetical conserved 99.5 6.1E-13 2.1E-17 120.1 19.8 63 236-298 3-68 (217)
54 1ouv_A Conserved hypothetical 99.5 2.9E-12 9.9E-17 120.4 25.2 226 237-506 5-255 (273)
55 2vq2_A PILW, putative fimbrial 99.5 2.3E-12 8E-17 116.8 22.9 208 268-513 7-222 (225)
56 4a1s_A PINS, partner of inscut 99.5 1.7E-13 5.7E-18 137.3 15.9 197 340-536 127-372 (411)
57 3sf4_A G-protein-signaling mod 99.5 4.8E-13 1.6E-17 133.5 18.2 267 239-535 10-335 (406)
58 2h6f_A Protein farnesyltransfe 99.5 1.4E-12 4.9E-17 127.6 21.0 226 305-535 98-347 (382)
59 3ro2_A PINS homolog, G-protein 99.5 6.5E-13 2.2E-17 128.7 17.5 264 243-537 10-333 (338)
60 4abn_A Tetratricopeptide repea 99.5 2.8E-13 9.7E-18 137.7 15.5 209 320-533 84-318 (474)
61 1xnf_A Lipoprotein NLPI; TPR, 99.5 1.7E-12 5.8E-17 122.0 19.2 218 315-537 16-245 (275)
62 3sf4_A G-protein-signaling mod 99.5 1.2E-12 4.2E-17 130.5 19.2 290 207-524 11-364 (406)
63 3vtx_A MAMA; tetratricopeptide 99.4 4.5E-12 1.5E-16 111.1 17.2 167 338-507 4-175 (184)
64 4e6h_A MRNA 3'-END-processing 99.4 5E-10 1.7E-14 117.0 32.8 419 66-508 48-576 (679)
65 4a1s_A PINS, partner of inscut 99.4 3E-12 1E-16 128.1 15.3 268 210-505 53-375 (411)
66 2ond_A Cleavage stimulation fa 99.4 6.6E-11 2.3E-15 113.1 23.7 184 321-507 81-275 (308)
67 4gyw_A UDP-N-acetylglucosamine 99.4 7.3E-12 2.5E-16 132.4 18.4 162 369-535 8-173 (723)
68 3as5_A MAMA; tetratricopeptide 99.4 1.9E-11 6.4E-16 107.0 17.9 163 372-537 10-174 (186)
69 3ro2_A PINS homolog, G-protein 99.4 5.4E-12 1.9E-16 122.1 15.7 268 210-505 10-335 (338)
70 2ond_A Cleavage stimulation fa 99.4 8.2E-11 2.8E-15 112.5 22.3 212 322-538 34-272 (308)
71 4i17_A Hypothetical protein; T 99.4 2.4E-11 8.3E-16 110.6 17.8 163 371-536 8-209 (228)
72 3ulq_A Response regulator aspa 99.4 2.6E-11 8.7E-16 120.1 19.3 163 372-535 186-367 (383)
73 4e6h_A MRNA 3'-END-processing 99.4 1E-09 3.4E-14 114.7 31.5 397 140-538 63-572 (679)
74 1hz4_A MALT regulatory protein 99.3 1E-09 3.5E-14 108.1 29.4 195 342-536 96-322 (373)
75 4abn_A Tetratricopeptide repea 99.3 2.7E-11 9.4E-16 123.1 18.3 179 355-537 84-288 (474)
76 3ulq_A Response regulator aspa 99.3 2.6E-11 8.9E-16 120.0 17.4 290 215-504 22-370 (383)
77 3nf1_A KLC 1, kinesin light ch 99.3 1.9E-12 6.6E-17 123.9 8.6 237 269-535 27-306 (311)
78 3as5_A MAMA; tetratricopeptide 99.3 1.2E-10 4.3E-15 101.6 19.1 167 340-509 9-180 (186)
79 4i17_A Hypothetical protein; T 99.3 1E-10 3.4E-15 106.4 18.3 203 303-517 6-224 (228)
80 3nf1_A KLC 1, kinesin light ch 99.3 6.1E-12 2.1E-16 120.4 9.7 244 238-505 27-310 (311)
81 3q15_A PSP28, response regulat 99.2 1.1E-09 3.7E-14 108.1 23.4 163 372-535 184-364 (378)
82 3qky_A Outer membrane assembly 99.2 3.7E-10 1.3E-14 105.0 18.9 87 477-586 152-251 (261)
83 3q15_A PSP28, response regulat 99.2 2.4E-10 8.3E-15 112.8 17.9 295 207-502 12-365 (378)
84 1hz4_A MALT regulatory protein 99.2 8E-09 2.7E-13 101.6 24.4 264 214-504 23-324 (373)
85 1qqe_A Vesicular transport pro 99.1 5E-10 1.7E-14 106.0 14.6 187 347-533 45-266 (292)
86 3edt_B KLC 2, kinesin light ch 99.1 5.5E-10 1.9E-14 104.9 14.3 220 316-535 13-280 (283)
87 4gyw_A UDP-N-acetylglucosamine 99.1 4E-10 1.4E-14 119.2 14.6 163 337-504 7-176 (723)
88 2fo7_A Synthetic consensus TPR 99.1 2.2E-09 7.6E-14 87.9 15.1 127 409-537 5-133 (136)
89 2yhc_A BAMD, UPF0169 lipoprote 99.1 6.4E-09 2.2E-13 94.1 19.1 179 341-539 6-216 (225)
90 3mv2_B Coatomer subunit epsilo 99.1 3.4E-08 1.1E-12 91.6 23.6 40 248-287 23-63 (310)
91 3mv2_B Coatomer subunit epsilo 99.1 1.4E-08 4.7E-13 94.2 20.3 160 344-510 105-290 (310)
92 3qky_A Outer membrane assembly 99.1 2.8E-09 9.5E-14 99.1 15.8 187 338-524 14-249 (261)
93 3qou_A Protein YBBN; thioredox 99.1 3.1E-09 1.1E-13 100.1 15.8 177 355-535 102-283 (287)
94 2fo7_A Synthetic consensus TPR 99.1 6.3E-09 2.1E-13 85.1 15.8 132 372-506 3-136 (136)
95 1qqe_A Vesicular transport pro 99.0 4.4E-09 1.5E-13 99.4 16.6 221 253-510 32-277 (292)
96 4ga2_A E3 SUMO-protein ligase 99.0 6E-10 2E-14 93.6 9.0 120 413-535 5-128 (150)
97 4ga2_A E3 SUMO-protein ligase 99.0 2.6E-10 8.9E-15 95.8 6.5 139 379-522 6-149 (150)
98 3rjv_A Putative SEL1 repeat pr 99.0 3.8E-08 1.3E-12 88.0 20.8 162 367-537 15-198 (212)
99 2pzi_A Probable serine/threoni 99.0 8.4E-10 2.9E-14 117.3 11.4 168 315-487 402-582 (681)
100 3gyz_A Chaperone protein IPGC; 99.0 3.1E-09 1.1E-13 88.8 11.4 102 436-537 30-134 (151)
101 2r5s_A Uncharacterized protein 99.0 3E-09 1E-13 92.2 11.6 76 460-535 93-172 (176)
102 2vgx_A Chaperone SYCD; alterna 99.0 3.5E-09 1.2E-13 88.5 11.2 102 436-537 15-119 (148)
103 3edt_B KLC 2, kinesin light ch 99.0 6.7E-09 2.3E-13 97.4 14.5 200 269-502 43-281 (283)
104 4gco_A Protein STI-1; structur 99.0 7.1E-09 2.4E-13 83.9 12.3 99 437-535 8-109 (126)
105 2vsy_A XCC0866; transferase, g 99.0 9.1E-09 3.1E-13 107.4 16.4 160 352-514 2-169 (568)
106 3urz_A Uncharacterized protein 98.9 2.4E-08 8.1E-13 89.1 15.8 156 345-505 10-189 (208)
107 3urz_A Uncharacterized protein 98.9 1.7E-08 5.9E-13 90.0 13.5 161 373-538 7-188 (208)
108 2vsy_A XCC0866; transferase, g 98.9 2.9E-08 9.9E-13 103.6 17.2 149 384-536 3-157 (568)
109 2uy1_A Cleavage stimulation fa 98.9 1.5E-07 5.3E-12 95.4 21.8 219 356-596 196-432 (493)
110 4gco_A Protein STI-1; structur 98.9 1.6E-08 5.6E-13 81.7 11.6 114 401-516 8-124 (126)
111 2xcb_A PCRH, regulatory protei 98.9 3E-08 1E-12 82.3 13.2 97 441-537 18-116 (142)
112 2pzi_A Probable serine/threoni 98.9 9.5E-08 3.2E-12 101.6 20.1 168 350-522 402-583 (681)
113 1hh8_A P67PHOX, NCF-2, neutrop 98.9 6.8E-08 2.3E-12 86.4 16.1 127 373-505 9-153 (213)
114 2ifu_A Gamma-SNAP; membrane fu 98.9 4.1E-08 1.4E-12 93.5 15.2 181 346-529 43-254 (307)
115 2ifu_A Gamma-SNAP; membrane fu 98.8 2.8E-08 9.5E-13 94.7 13.8 196 317-534 4-222 (307)
116 3qou_A Protein YBBN; thioredox 98.8 9.5E-08 3.3E-12 89.9 16.0 134 402-537 114-249 (287)
117 2uy1_A Cleavage stimulation fa 98.8 1.7E-06 5.7E-11 87.8 25.6 344 126-501 28-412 (493)
118 3u3w_A Transcriptional activat 98.8 8.5E-07 2.9E-11 83.7 22.1 161 375-535 80-265 (293)
119 2r5s_A Uncharacterized protein 98.8 5.4E-08 1.8E-12 84.1 12.5 156 341-501 8-172 (176)
120 3dra_A Protein farnesyltransfe 98.8 6.6E-07 2.2E-11 83.9 20.7 218 283-534 47-285 (306)
121 1a17_A Serine/threonine protei 98.8 1E-07 3.5E-12 81.2 13.9 127 407-535 15-145 (166)
122 2qfc_A PLCR protein; TPR, HTH, 98.8 2.4E-07 8.3E-12 87.5 17.1 164 372-535 77-265 (293)
123 2yhc_A BAMD, UPF0169 lipoprote 98.8 2E-07 6.7E-12 84.2 15.8 184 304-508 4-219 (225)
124 2e2e_A Formate-dependent nitri 98.8 6.9E-08 2.4E-12 83.5 12.2 120 416-537 21-145 (177)
125 3dra_A Protein farnesyltransfe 98.7 6E-06 2.1E-10 77.3 25.3 238 245-515 39-301 (306)
126 3upv_A Heat shock protein STI1 98.7 1.1E-07 3.7E-12 76.9 11.9 97 441-537 4-102 (126)
127 1na0_A Designed protein CTPR3; 98.7 2E-07 7E-12 74.7 13.4 114 406-521 10-125 (125)
128 2lni_A Stress-induced-phosphop 98.7 1.5E-07 5.3E-12 76.6 12.6 116 405-522 16-133 (133)
129 2c2l_A CHIP, carboxy terminus 98.7 2.2E-08 7.4E-13 94.0 8.2 192 339-536 4-199 (281)
130 2vyi_A SGTA protein; chaperone 98.7 1.6E-07 5.6E-12 76.1 12.5 117 405-523 12-130 (131)
131 1hh8_A P67PHOX, NCF-2, neutrop 98.7 5.6E-07 1.9E-11 80.3 17.1 124 343-467 10-147 (213)
132 1p5q_A FKBP52, FK506-binding p 98.7 2E-07 6.9E-12 89.8 14.2 95 441-535 196-293 (336)
133 3rjv_A Putative SEL1 repeat pr 98.7 8.9E-07 3E-11 79.0 17.1 161 338-505 17-200 (212)
134 3sz7_A HSC70 cochaperone (SGT) 98.7 3.9E-07 1.3E-11 77.6 13.5 102 406-509 12-115 (164)
135 1hxi_A PEX5, peroxisome target 98.6 1.3E-07 4.4E-12 75.8 9.1 95 443-537 19-115 (121)
136 4f3v_A ESX-1 secretion system 98.6 2.8E-07 9.4E-12 84.3 12.0 124 411-537 108-238 (282)
137 2kck_A TPR repeat; tetratricop 98.6 2.2E-07 7.5E-12 72.9 10.2 98 441-538 6-108 (112)
138 3gyz_A Chaperone protein IPGC; 98.6 4.6E-07 1.6E-11 75.5 12.2 104 402-507 32-138 (151)
139 3q49_B STIP1 homology and U bo 98.6 4.5E-07 1.5E-11 74.4 12.1 99 439-537 7-107 (137)
140 2vgx_A Chaperone SYCD; alterna 98.6 1.1E-07 3.9E-12 79.3 8.4 104 405-510 21-126 (148)
141 4gcn_A Protein STI-1; structur 98.6 2.4E-07 8.2E-12 75.0 9.9 94 442-535 9-111 (127)
142 3u3w_A Transcriptional activat 98.6 5.2E-06 1.8E-10 78.2 20.0 158 345-502 81-266 (293)
143 3gw4_A Uncharacterized protein 98.6 1.9E-06 6.4E-11 76.1 16.0 153 382-535 4-175 (203)
144 1elw_A TPR1-domain of HOP; HOP 98.5 6.9E-07 2.4E-11 70.7 11.4 94 442-535 5-100 (118)
145 2fbn_A 70 kDa peptidylprolyl i 98.5 6E-07 2.1E-11 79.1 11.8 168 349-537 14-187 (198)
146 2lni_A Stress-induced-phosphop 98.5 9.8E-07 3.3E-11 71.7 12.3 97 440-536 15-113 (133)
147 4f3v_A ESX-1 secretion system 98.5 3.6E-07 1.2E-11 83.6 10.4 136 373-513 105-247 (282)
148 2e2e_A Formate-dependent nitri 98.5 6.1E-07 2.1E-11 77.4 11.3 127 381-510 21-152 (177)
149 2qfc_A PLCR protein; TPR, HTH, 98.5 5.8E-06 2E-10 77.9 19.0 162 341-502 77-266 (293)
150 1na0_A Designed protein CTPR3; 98.5 9.4E-07 3.2E-11 70.7 11.7 97 441-537 9-107 (125)
151 1elw_A TPR1-domain of HOP; HOP 98.5 1.5E-06 5.1E-11 68.7 12.6 110 406-517 5-116 (118)
152 2vyi_A SGTA protein; chaperone 98.5 2.1E-06 7.1E-11 69.3 13.4 98 440-537 11-110 (131)
153 3upv_A Heat shock protein STI1 98.5 1.1E-06 3.8E-11 70.9 11.2 110 406-517 5-122 (126)
154 3rkv_A Putative peptidylprolyl 98.5 1.1E-06 3.8E-11 74.5 11.7 64 473-536 63-126 (162)
155 2xcb_A PCRH, regulatory protei 98.5 8.4E-07 2.9E-11 73.4 10.6 106 406-513 19-126 (142)
156 3gw4_A Uncharacterized protein 98.5 1.1E-06 3.8E-11 77.5 11.9 153 351-503 4-177 (203)
157 3sz7_A HSC70 cochaperone (SGT) 98.5 1.6E-06 5.6E-11 73.6 12.3 95 441-535 11-107 (164)
158 2xev_A YBGF; tetratricopeptide 98.5 9.2E-07 3.2E-11 71.6 10.2 92 446-537 7-106 (129)
159 2dba_A Smooth muscle cell asso 98.5 3.1E-06 1E-10 70.2 13.6 109 406-517 29-143 (148)
160 2dba_A Smooth muscle cell asso 98.5 1.6E-06 5.5E-11 71.9 11.7 97 440-536 27-128 (148)
161 1a17_A Serine/threonine protei 98.4 4.5E-06 1.5E-10 70.8 14.4 128 371-501 14-145 (166)
162 2hr2_A Hypothetical protein; a 98.4 1E-06 3.5E-11 72.6 9.3 63 474-536 58-131 (159)
163 1elr_A TPR2A-domain of HOP; HO 98.4 2.1E-06 7E-11 69.4 10.8 94 442-535 5-107 (131)
164 3q49_B STIP1 homology and U bo 98.4 2.4E-06 8.3E-11 69.9 11.2 101 403-505 7-109 (137)
165 1kt0_A FKBP51, 51 kDa FK506-bi 98.4 2.9E-06 9.8E-11 85.5 13.9 144 370-535 268-414 (457)
166 3q7a_A Farnesyltransferase alp 98.4 2.5E-05 8.4E-10 74.0 19.1 227 272-535 57-330 (349)
167 1wao_1 Serine/threonine protei 98.4 2.2E-06 7.4E-11 86.8 12.5 114 381-497 17-134 (477)
168 1wao_1 Serine/threonine protei 98.4 8.7E-07 3E-11 89.7 9.1 119 412-532 13-135 (477)
169 2fbn_A 70 kDa peptidylprolyl i 98.3 4.3E-06 1.5E-10 73.6 12.3 95 442-536 39-151 (198)
170 3q7a_A Farnesyltransferase alp 98.3 0.00022 7.7E-09 67.4 24.4 229 246-513 62-343 (349)
171 3dss_A Geranylgeranyl transfer 98.3 0.0002 6.9E-09 67.4 23.0 189 320-513 90-315 (331)
172 2c2l_A CHIP, carboxy terminus 98.3 4.7E-06 1.6E-10 77.9 11.8 113 404-518 3-117 (281)
173 3k9i_A BH0479 protein; putativ 98.3 5.3E-07 1.8E-11 71.7 4.5 83 454-536 3-90 (117)
174 2kck_A TPR repeat; tetratricop 98.3 5E-06 1.7E-10 64.9 9.7 100 406-507 7-111 (112)
175 1elr_A TPR2A-domain of HOP; HO 98.3 1E-05 3.4E-10 65.2 11.8 108 408-518 7-123 (131)
176 1hxi_A PEX5, peroxisome target 98.3 4.6E-06 1.6E-10 66.6 9.4 98 408-507 20-119 (121)
177 3ro3_A PINS homolog, G-protein 98.2 7.3E-06 2.5E-10 68.9 11.1 93 443-535 51-157 (164)
178 3dss_A Geranylgeranyl transfer 98.2 0.00021 7.2E-09 67.3 21.5 179 355-536 90-304 (331)
179 1p5q_A FKBP52, FK506-binding p 98.2 1.7E-05 5.7E-10 76.3 14.3 129 369-501 146-293 (336)
180 2if4_A ATFKBP42; FKBP-like, al 98.2 1.9E-06 6.5E-11 83.0 7.5 147 371-537 180-329 (338)
181 2xev_A YBGF; tetratricopeptide 98.2 2.2E-05 7.6E-10 63.2 12.8 104 411-514 8-117 (129)
182 4b4t_Q 26S proteasome regulato 98.2 1.1E-05 3.8E-10 80.8 13.1 164 372-535 57-244 (434)
183 3rkv_A Putative peptidylprolyl 98.2 5.1E-06 1.7E-10 70.3 8.4 76 441-516 63-141 (162)
184 4gcn_A Protein STI-1; structur 98.2 2.4E-05 8.1E-10 63.0 11.9 31 475-505 85-115 (127)
185 3k9i_A BH0479 protein; putativ 98.1 1.8E-06 6.1E-11 68.6 4.8 92 418-510 3-98 (117)
186 1ihg_A Cyclophilin 40; ppiase 98.1 9.1E-06 3.1E-10 79.1 10.8 89 441-529 273-363 (370)
187 1dce_A Protein (RAB geranylger 98.1 8.4E-05 2.9E-09 76.5 18.4 169 354-525 44-244 (567)
188 3n71_A Histone lysine methyltr 98.1 2.3E-05 7.9E-10 78.7 13.6 123 415-537 319-465 (490)
189 3ma5_A Tetratricopeptide repea 98.1 1.7E-05 5.7E-10 60.8 9.4 66 471-536 5-70 (100)
190 2l6j_A TPR repeat-containing p 98.1 6.4E-06 2.2E-10 64.3 6.8 93 440-532 3-103 (111)
191 3ro3_A PINS homolog, G-protein 98.1 1.4E-05 4.7E-10 67.2 9.4 133 372-504 11-160 (164)
192 2hr2_A Hypothetical protein; a 98.1 1.6E-05 5.5E-10 65.5 9.2 68 443-510 59-139 (159)
193 1kt0_A FKBP51, 51 kDa FK506-bi 98.0 2.9E-05 1E-09 78.1 12.6 95 443-537 270-381 (457)
194 1na3_A Designed protein CTPR2; 98.0 2.2E-05 7.4E-10 58.6 8.9 81 441-521 9-91 (91)
195 4b4t_Q 26S proteasome regulato 98.0 6.6E-05 2.3E-09 75.0 15.1 159 377-535 11-203 (434)
196 1ihg_A Cyclophilin 40; ppiase 98.0 3E-05 1E-09 75.4 11.3 65 472-536 272-336 (370)
197 1zu2_A Mitochondrial import re 98.0 4E-06 1.4E-10 68.9 4.2 85 454-538 15-122 (158)
198 2l6j_A TPR repeat-containing p 98.0 9.3E-05 3.2E-09 57.5 11.5 66 472-537 3-68 (111)
199 3n71_A Histone lysine methyltr 98.0 4.8E-05 1.6E-09 76.4 11.9 117 449-583 317-451 (490)
200 2if4_A ATFKBP42; FKBP-like, al 97.9 2.1E-05 7.1E-10 75.7 8.9 150 339-507 179-333 (338)
201 2kat_A Uncharacterized protein 97.9 3.5E-05 1.2E-09 60.7 8.7 77 460-536 4-82 (115)
202 3bee_A Putative YFRE protein; 97.9 7.3E-05 2.5E-09 55.9 8.9 69 470-538 3-74 (93)
203 3qwp_A SET and MYND domain-con 97.8 0.00015 5.2E-09 71.6 13.2 116 448-581 294-427 (429)
204 1klx_A Cysteine rich protein B 97.8 0.00031 1.1E-08 57.3 12.3 89 447-537 31-127 (138)
205 3qww_A SET and MYND domain-con 97.7 0.0001 3.5E-09 72.7 10.0 103 454-574 311-431 (433)
206 1dce_A Protein (RAB geranylger 97.7 0.0007 2.4E-08 69.7 15.5 150 384-537 43-222 (567)
207 3lvg_A Clathrin heavy chain 1; 97.6 1.8E-06 6.3E-11 82.6 -4.1 254 51-326 55-313 (624)
208 3lvg_A Clathrin heavy chain 1; 97.6 2.1E-05 7.3E-10 75.5 2.9 231 47-290 80-325 (624)
209 1zu2_A Mitochondrial import re 97.6 7.5E-05 2.6E-09 61.4 5.6 87 420-508 17-126 (158)
210 1klx_A Cysteine rich protein B 97.6 0.0013 4.4E-08 53.5 13.2 112 384-504 9-128 (138)
211 1na3_A Designed protein CTPR2; 97.6 0.00022 7.5E-09 52.9 7.9 65 473-537 9-73 (91)
212 2kat_A Uncharacterized protein 97.6 0.00027 9.3E-09 55.4 8.7 81 424-506 4-86 (115)
213 2kc7_A BFR218_protein; tetratr 97.5 0.00042 1.4E-08 52.5 8.3 64 447-510 6-72 (99)
214 3ly7_A Transcriptional activat 97.5 0.0032 1.1E-07 59.5 15.6 139 367-507 191-344 (372)
215 1qsa_A Protein (soluble lytic 97.3 0.2 6.7E-06 51.6 28.0 114 384-501 228-347 (618)
216 2kc7_A BFR218_protein; tetratr 97.3 0.0016 5.3E-08 49.2 9.1 85 412-506 7-94 (99)
217 1pc2_A Mitochondria fission pr 97.3 0.0013 4.4E-08 53.4 8.7 87 420-508 13-106 (152)
218 3ma5_A Tetratricopeptide repea 97.2 0.0014 4.8E-08 49.7 8.6 64 369-433 6-69 (100)
219 3mkq_A Coatomer beta'-subunit; 97.2 0.012 4.1E-07 63.9 19.3 152 182-362 607-759 (814)
220 3qww_A SET and MYND domain-con 97.2 0.0015 5.2E-08 64.3 10.7 93 418-510 311-424 (433)
221 3qwp_A SET and MYND domain-con 97.1 0.003 1E-07 62.4 11.7 97 415-511 297-414 (429)
222 1wy6_A Hypothetical protein ST 97.0 0.066 2.3E-06 41.7 15.6 141 380-539 17-157 (172)
223 3ly7_A Transcriptional activat 97.0 0.0091 3.1E-07 56.4 13.1 133 402-538 191-341 (372)
224 3u64_A Protein TP_0956; tetrat 96.8 0.0041 1.4E-07 56.2 8.8 87 457-543 179-276 (301)
225 2v5f_A Prolyl 4-hydroxylase su 96.6 0.01 3.4E-07 45.3 8.6 73 442-514 6-87 (104)
226 3mkq_A Coatomer beta'-subunit; 96.6 0.034 1.2E-06 60.3 16.0 96 93-200 611-707 (814)
227 3bee_A Putative YFRE protein; 96.5 0.019 6.4E-07 42.6 9.4 70 438-507 3-77 (93)
228 2v5f_A Prolyl 4-hydroxylase su 96.4 0.026 9E-07 42.9 10.0 66 472-537 4-76 (104)
229 3ltj_A Alpharep-4; protein eng 96.4 0.14 4.8E-06 44.3 16.1 152 38-189 16-167 (201)
230 1nzn_A CGI-135 protein, fissio 96.4 0.021 7.1E-07 44.5 8.9 87 420-508 16-109 (126)
231 1pc2_A Mitochondria fission pr 96.4 0.014 4.7E-07 47.3 8.3 82 387-471 15-102 (152)
232 3mkq_B Coatomer subunit alpha; 96.3 0.37 1.3E-05 40.1 16.3 105 245-366 12-116 (177)
233 3ltm_A Alpha-REP4; protein eng 96.1 0.33 1.1E-05 42.3 16.5 153 37-189 20-172 (211)
234 3ltm_A Alpha-REP4; protein eng 95.8 0.54 1.8E-05 40.9 16.8 121 70-190 22-142 (211)
235 3ltj_A Alpharep-4; protein eng 95.6 0.88 3E-05 39.1 17.2 116 75-190 22-137 (201)
236 1y8m_A FIS1; mitochondria, unk 95.6 0.54 1.9E-05 37.2 13.6 70 438-507 36-111 (144)
237 1nzn_A CGI-135 protein, fissio 95.3 0.17 5.9E-06 39.3 9.9 84 386-472 17-106 (126)
238 3o48_A Mitochondria fission 1 95.0 0.15 5E-06 39.9 8.6 65 471-535 38-106 (134)
239 3u64_A Protein TP_0956; tetrat 94.8 0.064 2.2E-06 48.6 7.2 106 421-535 179-297 (301)
240 3mkq_B Coatomer subunit alpha; 94.8 0.96 3.3E-05 37.6 13.7 128 379-533 14-141 (177)
241 4h7y_A Dual specificity protei 94.8 0.13 4.6E-06 41.0 8.0 57 454-510 73-131 (161)
242 1wy6_A Hypothetical protein ST 94.7 1.2 4E-05 34.9 14.5 82 353-437 75-156 (172)
243 4h7y_A Dual specificity protei 94.4 0.19 6.4E-06 40.2 8.0 54 485-538 72-125 (161)
244 4gns_B Protein CSD3, chitin bi 94.4 0.15 5.2E-06 53.4 9.8 55 480-534 344-398 (754)
245 1oyz_A Hypothetical protein YI 92.5 6 0.00021 35.9 18.4 20 171-190 139-158 (280)
246 3txn_A 26S proteasome regulato 92.1 3.1 0.00011 39.9 14.2 88 446-533 104-207 (394)
247 4ady_A RPN2, 26S proteasome re 91.6 14 0.00049 39.6 19.7 157 246-408 498-664 (963)
248 4ady_A RPN2, 26S proteasome re 91.6 17 0.00058 39.1 27.5 292 178-476 343-664 (963)
249 4b4t_P 26S proteasome regulato 91.1 4.6 0.00016 39.7 14.8 181 353-535 30-246 (445)
250 2ff4_A Probable regulatory pro 89.0 1.2 4E-05 43.1 8.4 59 477-535 175-233 (388)
251 3ffl_A Anaphase-promoting comp 88.5 2.9 0.0001 34.1 8.9 129 47-184 17-165 (167)
252 4fhn_B Nucleoporin NUP120; pro 88.5 6.6 0.00023 44.1 15.1 192 341-534 814-1048(1139)
253 4fhn_B Nucleoporin NUP120; pro 87.7 5.4 0.00018 44.8 13.8 143 177-322 815-989 (1139)
254 2ff4_A Probable regulatory pro 87.6 4.2 0.00014 39.1 11.4 71 374-445 175-249 (388)
255 1y8m_A FIS1; mitochondria, unk 87.2 4.5 0.00015 32.0 9.0 65 471-535 37-105 (144)
256 1v54_E Cytochrome C oxidase po 87.0 3.3 0.00011 30.4 7.4 63 385-449 25-87 (109)
257 3ffl_A Anaphase-promoting comp 86.8 4.5 0.00015 33.0 9.1 26 443-468 124-149 (167)
258 1zbp_A Hypothetical protein VP 86.1 9 0.00031 34.2 11.4 53 380-433 7-59 (273)
259 3o48_A Mitochondria fission 1 85.9 3.2 0.00011 32.4 7.4 71 439-509 38-114 (134)
260 3txn_A 26S proteasome regulato 85.7 26 0.00088 33.5 16.0 57 376-432 105-166 (394)
261 2wpv_A GET4, UPF0363 protein Y 85.2 23 0.00078 32.6 20.9 183 213-434 21-217 (312)
262 1qsa_A Protein (soluble lytic 84.5 39 0.0013 34.6 39.3 439 61-540 17-483 (618)
263 4b4t_P 26S proteasome regulato 83.7 35 0.0012 33.4 17.9 206 282-499 29-264 (445)
264 1oyz_A Hypothetical protein YI 83.3 25 0.00087 31.5 19.7 174 47-220 34-221 (280)
265 2uwj_G Type III export protein 83.1 11 0.00039 27.4 9.3 85 320-409 22-106 (115)
266 2p58_C Putative type III secre 82.7 12 0.00041 27.4 9.7 85 320-409 23-107 (116)
267 2qx5_A Nucleoporin NIC96; mRNA 82.1 49 0.0017 34.1 19.0 82 274-366 299-383 (661)
268 2y69_E Cytochrome C oxidase su 80.7 8.5 0.00029 30.0 7.7 62 386-449 69-130 (152)
269 3esl_A Checkpoint serine/threo 80.2 19 0.00066 30.4 10.6 53 486-538 92-146 (202)
270 4gns_B Protein CSD3, chitin bi 80.1 7.7 0.00026 40.7 10.0 51 470-521 610-660 (754)
271 3lpz_A GET4 (YOR164C homolog); 79.4 40 0.0014 31.3 23.1 182 213-433 20-215 (336)
272 1zbp_A Hypothetical protein VP 79.3 4.5 0.00015 36.0 6.8 58 449-506 5-64 (273)
273 2p58_C Putative type III secre 79.3 16 0.00055 26.7 8.5 60 245-307 47-106 (116)
274 3lpz_A GET4 (YOR164C homolog); 78.1 43 0.0015 31.0 20.4 167 341-535 37-215 (336)
275 2uwj_G Type III export protein 77.7 15 0.00052 26.8 7.7 60 245-307 46-105 (115)
276 4b4t_R RPN7, 26S proteasome re 71.8 11 0.00037 36.9 8.2 60 407-467 133-194 (429)
277 1v54_E Cytochrome C oxidase po 71.0 28 0.00097 25.6 9.7 46 469-514 41-86 (109)
278 4a1g_A Mitotic checkpoint seri 70.9 39 0.0013 27.1 9.8 48 492-539 84-133 (152)
279 3mv2_A Coatomer subunit alpha; 70.2 45 0.0015 30.6 11.0 61 463-537 195-257 (325)
280 2wvi_A Mitotic checkpoint seri 65.1 55 0.0019 26.6 9.7 48 492-539 79-128 (164)
281 4b4t_R RPN7, 26S proteasome re 64.1 21 0.00072 34.8 8.4 108 339-447 131-249 (429)
282 3esl_A Checkpoint serine/threo 62.6 70 0.0024 27.0 10.6 57 383-440 92-149 (202)
283 2wpv_A GET4, UPF0363 protein Y 62.4 95 0.0032 28.5 21.1 169 341-535 35-216 (312)
284 2y69_E Cytochrome C oxidase su 60.3 59 0.002 25.4 9.6 47 468-514 83-129 (152)
285 1wdy_A 2-5A-dependent ribonucl 55.4 1.1E+02 0.0037 26.9 12.5 15 249-263 113-127 (285)
286 3eiq_C Programmed cell death p 51.7 1.6E+02 0.0054 27.6 14.7 232 85-333 58-321 (358)
287 2nsz_A Programmed cell death p 51.5 82 0.0028 24.4 8.2 65 241-305 10-79 (129)
288 3mkr_B Coatomer subunit alpha; 49.1 1.1E+02 0.0037 28.0 9.6 61 463-537 186-248 (320)
289 3bqo_A Telomeric repeat-bindin 48.9 58 0.002 27.3 7.0 65 457-521 94-165 (211)
290 1n11_A Ankyrin; clathrin, BAND 44.7 2.2E+02 0.0074 27.2 14.5 203 56-263 17-234 (437)
291 4aez_C MAD3, mitotic spindle c 43.8 1.3E+02 0.0045 25.8 8.8 48 491-538 132-181 (223)
292 2ion_A PDCD4, programmed cell 42.5 75 0.0026 25.4 6.9 65 241-305 12-81 (152)
293 2nsz_A Programmed cell death p 41.7 1E+02 0.0035 23.8 7.4 64 342-405 10-78 (129)
294 4b4t_S RPN3, 26S proteasome re 41.2 1.1E+02 0.0037 30.4 9.0 62 175-236 232-301 (523)
295 2d2s_A Exocyst complex compone 41.2 83 0.0028 27.4 7.5 87 376-466 24-116 (235)
296 4a1g_A Mitotic checkpoint seri 40.8 1.4E+02 0.0047 23.9 9.8 53 387-440 82-135 (152)
297 3ljn_A Hypothetical protein; a 39.8 1.4E+02 0.0047 27.8 9.7 86 215-300 27-112 (364)
298 1te4_A Conserved protein MTH18 38.8 56 0.0019 25.0 5.7 17 204-220 55-71 (131)
299 2d2s_A Exocyst complex compone 36.6 1.9E+02 0.0067 25.1 9.1 23 275-297 24-46 (235)
300 1ya0_A SMG-7 transcript varian 35.2 1.2E+02 0.0041 30.0 8.4 50 480-529 159-208 (497)
301 2wvi_A Mitotic checkpoint seri 34.3 1.9E+02 0.0064 23.5 10.5 53 388-441 78-131 (164)
302 2ion_A PDCD4, programmed cell 33.5 99 0.0034 24.7 6.2 64 342-405 12-80 (152)
303 4aez_C MAD3, mitotic spindle c 33.1 2E+02 0.0067 24.8 8.2 53 387-440 131-184 (223)
304 1wdy_A 2-5A-dependent ribonucl 32.9 2.5E+02 0.0084 24.5 11.2 19 245-263 152-170 (285)
305 4b4t_S RPN3, 26S proteasome re 32.9 1E+02 0.0035 30.5 7.3 59 406-466 232-295 (523)
306 2r9g_A AAA ATPase, central reg 32.5 2.2E+02 0.0077 23.9 9.3 39 381-420 25-63 (204)
307 4gq2_M Nucleoporin NUP120; bet 31.2 1.8E+02 0.0061 31.8 9.7 103 180-283 816-950 (950)
308 3ygs_P Procaspase 9; apoptosis 31.2 59 0.002 23.6 4.2 38 64-101 51-88 (97)
309 2r9g_A AAA ATPase, central reg 28.8 2.6E+02 0.0089 23.5 9.8 63 272-335 14-84 (204)
310 3ygs_P Procaspase 9; apoptosis 28.1 80 0.0027 22.9 4.4 38 252-289 51-88 (97)
311 3bge_A Predicted ATPase; struc 26.0 2.6E+02 0.0089 23.4 7.5 39 381-419 18-56 (201)
312 2fe3_A Peroxide operon regulat 25.3 1.4E+02 0.0049 23.4 5.9 36 419-455 35-70 (145)
313 3ctd_A Putative ATPase, AAA fa 25.2 3.1E+02 0.011 23.2 8.7 39 381-419 46-84 (213)
314 3bge_A Predicted ATPase; struc 24.5 3.1E+02 0.011 23.0 8.8 46 273-318 8-56 (201)
315 4gq2_M Nucleoporin NUP120; bet 23.9 7.2E+02 0.025 26.9 13.0 48 306-353 899-950 (950)
316 3bu8_A Telomeric repeat-bindin 23.8 2.6E+02 0.0091 23.8 7.1 68 421-488 88-162 (235)
317 3kae_A CDC27, possible protein 21.6 3.4E+02 0.012 22.3 11.2 83 447-532 39-139 (242)
318 2xig_A Ferric uptake regulatio 21.5 1.9E+02 0.0065 22.9 6.0 38 418-456 39-76 (150)
319 3hra_A Ankyrin repeat family p 20.3 3.5E+02 0.012 21.9 9.3 16 154-169 13-28 (201)
No 1
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=100.00 E-value=5.8e-42 Score=363.29 Aligned_cols=475 Identities=9% Similarity=-0.046 Sum_probs=392.2
Q ss_pred HHHHhcCChHHHHHHHhhcCCCCcchHHHHHHHHHhCCChhHHHHHHhhCC--CCCcchHHHHHHHHHcCCChHHHHHHH
Q 007573 58 SALSRAGKISAARQLFDQMTTKDVITWNAIITGYWQNGFLQESKNLFQSMP--VKNIVSWNCMIAGCIDNDRIDDAFDYF 135 (597)
Q Consensus 58 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~ll~~~~~~~~~~~A~~~~ 135 (597)
..+.+.|.+..+...++.++.+++..|+.++..|.+.|++++|+.+|+++. .|+..++..++.+|.+.|++++|..++
T Consensus 61 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~ 140 (597)
T 2xpi_A 61 NNTSTDGSFLKERNAQNTDSLSREDYLRLWRHDALMQQQYKCAAFVGEKVLDITGNPNDAFWLAQVYCCTGDYARAKCLL 140 (597)
T ss_dssp ---------------------CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred ccccccCccCCCCCccccchHHHHHHHHHHHHHHHHccCchHHHHHHHHHHhhCCCchHHHHHHHHHHHcCcHHHHHHHH
Confidence 345677888889999999988899999999999999999999999999986 357789999999999999999999999
Q ss_pred ccCC--CCChhhHHHHHHHHHcCCChHHHHHHHccCCCC-------------------CchhHHHHHHHHHhCCChhHHH
Q 007573 136 QAMP--ERNTATYNAMISGFLKHGRLEEATRLFEQMPRR-------------------NVISYTAMLDGFMKKGEVDKAR 194 (597)
Q Consensus 136 ~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-------------------~~~~~~~li~~~~~~g~~~~A~ 194 (597)
+.+. ++++.+++.++.+|.+.|++++|.++|+++... ++.+|+.++.+|.+.|++++|+
T Consensus 141 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 220 (597)
T 2xpi_A 141 TKEDLYNRSSACRYLAAFCLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAK 220 (597)
T ss_dssp HHTCGGGTCHHHHHHHHHHHHHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHhccccchhHHHHHHHHHHHHhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCCHHHHH
Confidence 9995 788999999999999999999999999965433 3788999999999999999999
Q ss_pred HHHHhccc--C-CcchHHHHHHHHHcCCChHHHHHH---HhhcCCC--CCCchHHHHHHHHHHhcCCHHHHHHHHhhcCC
Q 007573 195 ALSDYMSF--K-NVVSWTVMITGYVKNERFCEAREL---FYRMPDY--DKNVFVVTAMITGFCKVGMLENARLLFERIQP 266 (597)
Q Consensus 195 ~~~~~m~~--~-~~~~~~~ll~~~~~~g~~~~a~~~---~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 266 (597)
++|++|.. | +...+..+...+...+..+.+... +..+... .....+++.++..|.+.|++++|.++|+++.+
T Consensus 221 ~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~ 300 (597)
T 2xpi_A 221 ECYKEALMVDAKCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSING 300 (597)
T ss_dssp HHHHHHHHHCTTCHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHTSTT
T ss_pred HHHHHHHHhCchhhHHHHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHHHhhc
Confidence 99999954 3 334455555444433322221110 1111111 11234566678889999999999999999887
Q ss_pred --CChhHHHHHHHHHHHcCChhHHHHHHHHhHHCCCCCCHHHHHHHHHHHhccchhHHHHHHHHHHHHhCCCCcccHHHH
Q 007573 267 --KDCVSFNAMIAGYAQNGVAEEALRLFSGMIKMDMQPDDATLVSVFTACSALQLLNEGRQSHVLVIRNGFEANVSVCNA 344 (597)
Q Consensus 267 --~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 344 (597)
++..+|+.++.+|.+.|++++|+.+|+++.+.+ +.+..++..++.++...|+.++|..++..+.+.. +.+..+++.
T Consensus 301 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~ 378 (597)
T 2xpi_A 301 LEKSSDLLLCKADTLFVRSRFIDVLAITTKILEID-PYNLDVYPLHLASLHESGEKNKLYLISNDLVDRH-PEKAVTWLA 378 (597)
T ss_dssp GGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSHHHHHH
T ss_pred CCchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhC-cccHHHHHH
Confidence 789999999999999999999999999999865 3367788999999999999999999999998765 667889999
Q ss_pred HHHHHHhcCCHHHHHHHHhccC---CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHhccCcH
Q 007573 345 VITMYSRCGGILDSELAFRQIH---SPNLVSWNTIIAAFAQHGHYEKALIFFSQMGLNGFDPDGITFLSLLSACGHAGKV 421 (597)
Q Consensus 345 l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~ 421 (597)
++.+|.+.|++++|.++|+++. +.+..+|+.++.+|.+.|++++|+++|+++.+.+ +.+..++..++.+|.+.|++
T Consensus 379 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~ 457 (597)
T 2xpi_A 379 VGIYYLCVNKISEARRYFSKSSTMDPQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLF-QGTHLPYLFLGMQHMQLGNI 457 (597)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT-TTCSHHHHHHHHHHHHHTCH
T ss_pred HHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCCH
Confidence 9999999999999999999875 5678899999999999999999999999999764 55788999999999999999
Q ss_pred HHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHhhCC-------CCCC--HHHHHHHHHHHHhcCCHHHH
Q 007573 422 NESMDLFELMVKVYGIIPSSEHYTCLVDILSRAGQLEKAWQITQGMP-------FEAD--TGVWGSLLAACVINLNVELG 492 (597)
Q Consensus 422 ~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-------~~p~--~~~~~~l~~~~~~~g~~~~a 492 (597)
++|.++|+++.+. .+.+..+|..++.+|.+.|++++|.++|+++. ..|+ ..+|..++.+|...|++++|
T Consensus 458 ~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A 535 (597)
T 2xpi_A 458 LLANEYLQSSYAL--FQYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAA 535 (597)
T ss_dssp HHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHh--CCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHH
Confidence 9999999999874 24468899999999999999999999999874 3676 67999999999999999999
Q ss_pred HHHHHHHHhcCCCCCchHHHHHHHHHhcCCcHHHHHHHHHHHhCC
Q 007573 493 ELAAKKMRELDPQNSAVYVMLSNLYAAAGMWRDVTRVRLLMKEQG 537 (597)
Q Consensus 493 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 537 (597)
+..++++++.+|+++.+|..++.+|...|++++|.+.++++.+..
T Consensus 536 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~ 580 (597)
T 2xpi_A 536 IDALNQGLLLSTNDANVHTAIALVYLHKKIPGLAITHLHESLAIS 580 (597)
T ss_dssp HHHHHHHHHHSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHhcC
Confidence 999999999999999999999999999999999999999998754
No 2
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=100.00 E-value=1.3e-40 Score=352.96 Aligned_cols=469 Identities=7% Similarity=-0.010 Sum_probs=407.4
Q ss_pred CCCcchHHHHHHHHHhcCChHHHHHHHhhcCC--CCcchHHHHHHHHHhCCChhHHHHHHhhCC--CCCcchHHHHHHHH
Q 007573 47 TQYVFVNNAKISALSRAGKISAARQLFDQMTT--KDVITWNAIITGYWQNGFLQESKNLFQSMP--VKNIVSWNCMIAGC 122 (597)
Q Consensus 47 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~ll~~~ 122 (597)
.+++..|+.++..|.+.|++++|..+|+++.. |+..++..++.+|.+.|++++|+.+|+++. .+++.+++.++.+|
T Consensus 81 ~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~ 160 (597)
T 2xpi_A 81 LSREDYLRLWRHDALMQQQYKCAAFVGEKVLDITGNPNDAFWLAQVYCCTGDYARAKCLLTKEDLYNRSSACRYLAAFCL 160 (597)
T ss_dssp -CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHTTCHHHHHHHHHHTCGGGTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHccCchHHHHHHHHHHhhCCCchHHHHHHHHHHHcCcHHHHHHHHHHHhccccchhHHHHHHHHH
Confidence 36788899999999999999999999999965 888899999999999999999999999995 45999999999999
Q ss_pred HcCCChHHHHHHHccCCCCC-------------------hhhHHHHHHHHHcCCChHHHHHHHccCCC--C-CchhHHHH
Q 007573 123 IDNDRIDDAFDYFQAMPERN-------------------TATYNAMISGFLKHGRLEEATRLFEQMPR--R-NVISYTAM 180 (597)
Q Consensus 123 ~~~~~~~~A~~~~~~~~~~~-------------------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~l 180 (597)
.+.|++++|.++|+++.+.+ ..+|+.++.+|.+.|++++|.++|++|.+ | +...+..+
T Consensus 161 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l 240 (597)
T 2xpi_A 161 VKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMVDAKCYEAFDQL 240 (597)
T ss_dssp HHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HHHhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCchhhHHHHHH
Confidence 99999999999999765443 78999999999999999999999999975 3 34455556
Q ss_pred HHHHHhCCChhHHHHH---HHhcccC----CcchHHHHHHHHHcCCChHHHHHHHhhcCCCCCCchHHHHHHHHHHhcCC
Q 007573 181 LDGFMKKGEVDKARAL---SDYMSFK----NVVSWTVMITGYVKNERFCEARELFYRMPDYDKNVFVVTAMITGFCKVGM 253 (597)
Q Consensus 181 i~~~~~~g~~~~A~~~---~~~m~~~----~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 253 (597)
...+...+..+.+... +..+... ...+|+.++..|.+.|++++|.++|+.+.+.+++..+++.++..|.+.|+
T Consensus 241 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 320 (597)
T 2xpi_A 241 VSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGLEKSSDLLLCKADTLFVRSR 320 (597)
T ss_dssp HHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHTSTTGGGCHHHHHHHHHHHHHTTC
T ss_pred HHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHHHhhcCCchHHHHHHHHHHHHHhcC
Confidence 6555444333322211 2222222 23456667888999999999999999999887889999999999999999
Q ss_pred HHHHHHHHhhcC---CCChhHHHHHHHHHHHcCChhHHHHHHHHhHHCCCCCCHHHHHHHHHHHhccchhHHHHHHHHHH
Q 007573 254 LENARLLFERIQ---PKDCVSFNAMIAGYAQNGVAEEALRLFSGMIKMDMQPDDATLVSVFTACSALQLLNEGRQSHVLV 330 (597)
Q Consensus 254 ~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~ 330 (597)
+++|..+|+++. +.+..+|+.++.+|.+.|++++|..+++++.+.. +.+..++..+...+...|++++|..+++.+
T Consensus 321 ~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 399 (597)
T 2xpi_A 321 FIDVLAITTKILEIDPYNLDVYPLHLASLHESGEKNKLYLISNDLVDRH-PEKAVTWLAVGIYYLCVNKISEARRYFSKS 399 (597)
T ss_dssp HHHHHHHHHHHHHHCTTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 999999999875 3577899999999999999999999999998653 457788999999999999999999999999
Q ss_pred HHhCCCCcccHHHHHHHHHHhcCCHHHHHHHHhccC---CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCChHH
Q 007573 331 IRNGFEANVSVCNAVITMYSRCGGILDSELAFRQIH---SPNLVSWNTIIAAFAQHGHYEKALIFFSQMGLNGFDPDGIT 407 (597)
Q Consensus 331 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~ 407 (597)
.+.. +.+..+++.++.+|.+.|++++|.++|+++. +.+..+|+.++.+|.+.|++++|.++|+++.+.. +.+..+
T Consensus 400 ~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~ 477 (597)
T 2xpi_A 400 STMD-PQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLFQGTHLPYLFLGMQHMQLGNILLANEYLQSSYALF-QYDPLL 477 (597)
T ss_dssp HHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-CCCHHH
T ss_pred HHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHH
Confidence 8865 5567899999999999999999999999875 5678899999999999999999999999998764 457889
Q ss_pred HHHHHHHHhccCcHHHHHHHHHHhHHhc---CCCCC--hHHHHHHHHHHhhcCCHHHHHHHHhhCC--CCCCHHHHHHHH
Q 007573 408 FLSLLSACGHAGKVNESMDLFELMVKVY---GIIPS--SEHYTCLVDILSRAGQLEKAWQITQGMP--FEADTGVWGSLL 480 (597)
Q Consensus 408 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~---~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~ 480 (597)
|..++..+.+.|++++|.++|+++.+.. +..|+ ..+|..++.+|.+.|++++|.++++++. .+.+..+|..++
T Consensus 478 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~ 557 (597)
T 2xpi_A 478 LNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLSTNDANVHTAIA 557 (597)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSCCHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHH
Confidence 9999999999999999999999997753 55777 7899999999999999999999999876 344788999999
Q ss_pred HHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHH
Q 007573 481 AACVINLNVELGELAAKKMRELDPQNSAVYVMLSNLYA 518 (597)
Q Consensus 481 ~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 518 (597)
.+|...|++++|.+.++++++++|+++.++..++.+|.
T Consensus 558 ~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~ 595 (597)
T 2xpi_A 558 LVYLHKKIPGLAITHLHESLAISPNEIMASDLLKRALE 595 (597)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTC
T ss_pred HHHHHhCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHh
Confidence 99999999999999999999999999999999988764
No 3
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.97 E-value=1.4e-27 Score=238.30 Aligned_cols=367 Identities=12% Similarity=0.052 Sum_probs=254.3
Q ss_pred HHHHcCCChHHHHHHHccCCC--C-CchhHHHHHHHHHhCCChhHHHHHHHhcc---cCCcchHHHHHHHHHcCCChHHH
Q 007573 151 SGFLKHGRLEEATRLFEQMPR--R-NVISYTAMLDGFMKKGEVDKARALSDYMS---FKNVVSWTVMITGYVKNERFCEA 224 (597)
Q Consensus 151 ~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~---~~~~~~~~~ll~~~~~~g~~~~a 224 (597)
..+.+.|++++|.+.++++.+ | +...+..+...+...|++++|...++... +.+..+|..+..++.+.|++++|
T Consensus 7 ~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~p~~~~~~~~lg~~~~~~g~~~~A 86 (388)
T 1w3b_A 7 HREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEA 86 (388)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHHHH
Confidence 334445555555555554432 2 23344444555555555555555555442 22344555556666666666666
Q ss_pred HHHHhhcCCCCCCc-hHHHHHHHHHHhcCCHHHHHHHHhhcC---CCChhHHHHHHHHHHHcCChhHHHHHHHHhHHCCC
Q 007573 225 RELFYRMPDYDKNV-FVVTAMITGFCKVGMLENARLLFERIQ---PKDCVSFNAMIAGYAQNGVAEEALRLFSGMIKMDM 300 (597)
Q Consensus 225 ~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~ 300 (597)
...|+.+.+..|+. .++..++.++.+.|++++|.+.|+++. +.+...+..+...+...|++++|+..|+++.+..
T Consensus 87 ~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~- 165 (388)
T 1w3b_A 87 IEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQ- 165 (388)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHcCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-
Confidence 66666555544433 345556666666666666666665543 2233455556666666666666666666665532
Q ss_pred CCCHHHHHHHHHHHhccchhHHHHHHHHHHHHhCCCCcccHHHHHHHHHHhcCCHHHHHHHHhccC---CCChhhHHHHH
Q 007573 301 QPDDATLVSVFTACSALQLLNEGRQSHVLVIRNGFEANVSVCNAVITMYSRCGGILDSELAFRQIH---SPNLVSWNTII 377 (597)
Q Consensus 301 ~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li 377 (597)
+.+..++..+...+...|++++|...++.+++.+ +.+...+..+...+...|++++|...+++.. +.+..++..+.
T Consensus 166 p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~ 244 (388)
T 1w3b_A 166 PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLD-PNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLA 244 (388)
T ss_dssp TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCCHHHHHHHH
Confidence 2234555556666666666666666666666654 3445667777788888888888888887664 45677888899
Q ss_pred HHHHHcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCH
Q 007573 378 AAFAQHGHYEKALIFFSQMGLNGFDPDGITFLSLLSACGHAGKVNESMDLFELMVKVYGIIPSSEHYTCLVDILSRAGQL 457 (597)
Q Consensus 378 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~ 457 (597)
..+...|++++|++.|+++.+.. +.+..++..+..++.+.|++++|.+.|+++.+. .+.+..++..++..+.+.|++
T Consensus 245 ~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~ 321 (388)
T 1w3b_A 245 CVYYEQGLIDLAIDTYRRAIELQ-PHFPDAYCNLANALKEKGSVAEAEDCYNTALRL--CPTHADSLNNLANIKREQGNI 321 (388)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHTC-SSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHTTTCH
T ss_pred HHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CcccHHHHHHHHHHHHHcCCH
Confidence 99999999999999999998763 334678888999999999999999999999874 345688899999999999999
Q ss_pred HHHHHHHhhCC-CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCC
Q 007573 458 EKAWQITQGMP-FEA-DTGVWGSLLAACVINLNVELGELAAKKMRELDPQNSAVYVMLSNLYAAAGM 522 (597)
Q Consensus 458 ~~A~~~~~~~~-~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 522 (597)
++|.+.++++. ..| +..++..++.++...|++++|+..++++++++|+++.++..++.++...|+
T Consensus 322 ~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~a~~~lg~~~~~~~~ 388 (388)
T 1w3b_A 322 EEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQD 388 (388)
T ss_dssp HHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHhHHHHHHHccC
Confidence 99999998876 444 567899999999999999999999999999999999999999998887764
No 4
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.96 E-value=3e-26 Score=228.72 Aligned_cols=351 Identities=12% Similarity=0.074 Sum_probs=307.5
Q ss_pred HHHHHHhCCChhHHHHHHHhcc--cC-CcchHHHHHHHHHcCCChHHHHHHHhhcCCCCC-CchHHHHHHHHHHhcCCHH
Q 007573 180 MLDGFMKKGEVDKARALSDYMS--FK-NVVSWTVMITGYVKNERFCEARELFYRMPDYDK-NVFVVTAMITGFCKVGMLE 255 (597)
Q Consensus 180 li~~~~~~g~~~~A~~~~~~m~--~~-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~ 255 (597)
+...+.+.|++++|++.+..+. .| +...+..+...+...|++++|...++.+.+..| +..++..+...|.+.|+++
T Consensus 5 ~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~p~~~~~~~~lg~~~~~~g~~~ 84 (388)
T 1w3b_A 5 LAHREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQ 84 (388)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHH
Confidence 4567788999999999998883 34 456677788889999999999999999888666 5678999999999999999
Q ss_pred HHHHHHhhcC---CCChhHHHHHHHHHHHcCChhHHHHHHHHhHHCCCCCCH-HHHHHHHHHHhccchhHHHHHHHHHHH
Q 007573 256 NARLLFERIQ---PKDCVSFNAMIAGYAQNGVAEEALRLFSGMIKMDMQPDD-ATLVSVFTACSALQLLNEGRQSHVLVI 331 (597)
Q Consensus 256 ~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~~~~~ll~~~~~~~~~~~a~~~~~~~~ 331 (597)
+|...|+++. +.+..+|..++.++.+.|++++|+..|+++.+. .|+. ..+..+...+...|++++|...+..++
T Consensus 85 ~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al 162 (388)
T 1w3b_A 85 EAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQY--NPDLYCVRSDLGNLLKALGRLEEAKACYLKAI 162 (388)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHH--CTTCTHHHHHHHHHHHTTSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 9999999864 446678999999999999999999999999885 4544 455667778888999999999999999
Q ss_pred HhCCCCcccHHHHHHHHHHhcCCHHHHHHHHhccC---CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCChHHH
Q 007573 332 RNGFEANVSVCNAVITMYSRCGGILDSELAFRQIH---SPNLVSWNTIIAAFAQHGHYEKALIFFSQMGLNGFDPDGITF 408 (597)
Q Consensus 332 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~ 408 (597)
+.. +.+..++..+...+.+.|++++|...|+++. +.+...|..+...+...|++++|+..+++..... +.+..++
T Consensus 163 ~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~ 240 (388)
T 1w3b_A 163 ETQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLS-PNHAVVH 240 (388)
T ss_dssp HHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHC-TTCHHHH
T ss_pred HhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cCCHHHH
Confidence 875 5567889999999999999999999999886 4567789999999999999999999999998753 3347788
Q ss_pred HHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHhhCC--CCCCHHHHHHHHHHHHhc
Q 007573 409 LSLLSACGHAGKVNESMDLFELMVKVYGIIPSSEHYTCLVDILSRAGQLEKAWQITQGMP--FEADTGVWGSLLAACVIN 486 (597)
Q Consensus 409 ~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~ 486 (597)
..+..++...|++++|.+.|+++.+. .+.++..|..++.+|.+.|++++|.+.++++. .+++..++..++..+...
T Consensus 241 ~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~ 318 (388)
T 1w3b_A 241 GNLACVYYEQGLIDLAIDTYRRAIEL--QPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQ 318 (388)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHT--CSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHc
Confidence 99999999999999999999999863 23347889999999999999999999999876 455788999999999999
Q ss_pred CCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCcHHHHHHHHHHHhC
Q 007573 487 LNVELGELAAKKMRELDPQNSAVYVMLSNLYAAAGMWRDVTRVRLLMKEQ 536 (597)
Q Consensus 487 g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 536 (597)
|++++|+..++++++..|+++.++..++.+|.+.|++++|.+.++++.+.
T Consensus 319 g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~ 368 (388)
T 1w3b_A 319 GNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRI 368 (388)
T ss_dssp TCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTT
T ss_pred CCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 99999999999999999999999999999999999999999999999863
No 5
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=99.95 E-value=2.8e-27 Score=240.13 Aligned_cols=184 Identities=14% Similarity=0.139 Sum_probs=171.2
Q ss_pred hHHHHHHHHHHHcCChhHHHHHHHHhHHCCCCCCHHHHHHHHHHHhcc---------chhHHHHHHHHHHHHhCCCCccc
Q 007573 270 VSFNAMIAGYAQNGVAEEALRLFSGMIKMDMQPDDATLVSVFTACSAL---------QLLNEGRQSHVLVIRNGFEANVS 340 (597)
Q Consensus 270 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~---------~~~~~a~~~~~~~~~~~~~~~~~ 340 (597)
..++.+|.+|++.|+.++|+++|++|.+.|++||..||+++|.+|+.. +.++.|.+++++|.+.|+.||..
T Consensus 27 ~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~~Pd~~ 106 (501)
T 4g26_A 27 ALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKVVPNEA 106 (501)
T ss_dssp HHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTCCCCHH
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhCCCCCHH
Confidence 468889999999999999999999999999999999999999999754 45788999999999999999999
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHhccC----CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHh
Q 007573 341 VCNAVITMYSRCGGILDSELAFRQIH----SPNLVSWNTIIAAFAQHGHYEKALIFFSQMGLNGFDPDGITFLSLLSACG 416 (597)
Q Consensus 341 ~~~~l~~~~~~~g~~~~A~~~~~~~~----~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~ 416 (597)
+|+++|.+|++.|++++|.++|++|. .||..+|+++|.+|++.|+.++|.++|++|.+.|+.||..||+.++.+|+
T Consensus 107 tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~~ 186 (501)
T 4g26_A 107 TFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALLKVSM 186 (501)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHh
Confidence 99999999999999999999999986 68999999999999999999999999999999999999999999999999
Q ss_pred ccCcHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhc
Q 007573 417 HAGKVNESMDLFELMVKVYGIIPSSEHYTCLVDILSRA 454 (597)
Q Consensus 417 ~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~ 454 (597)
+.|++++|.+++++|... +..|+..||+.++..+...
T Consensus 187 ~~g~~d~A~~ll~~Mr~~-g~~ps~~T~~~l~~~F~s~ 223 (501)
T 4g26_A 187 DTKNADKVYKTLQRLRDL-VRQVSKSTFDMIEEWFKSE 223 (501)
T ss_dssp HTTCHHHHHHHHHHHHHH-TSSBCHHHHHHHHHHHHSH
T ss_pred hCCCHHHHHHHHHHHHHh-CCCcCHHHHHHHHHHHhcC
Confidence 999999999999999887 9999999999999988753
No 6
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=99.94 E-value=5.9e-26 Score=230.42 Aligned_cols=199 Identities=16% Similarity=0.152 Sum_probs=171.8
Q ss_pred hHHHHHHHHhHHCCCCCC-HHHHHHHHHHHhccchhHHHHHHHHHHHHhCCCCcccHHHHHHHHHHhcCC---------H
Q 007573 286 EEALRLFSGMIKMDMQPD-DATLVSVFTACSALQLLNEGRQSHVLVIRNGFEANVSVCNAVITMYSRCGG---------I 355 (597)
Q Consensus 286 ~~A~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~---------~ 355 (597)
..+..+.+++.+.++.+. ...+..+|.+|++.|++++|.+++++|.+.|+.||..+||+||.+|++.+. +
T Consensus 7 s~~e~L~~~~~~k~~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l 86 (501)
T 4g26_A 7 SPSENLSRKAKKKAIQQSPEALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGL 86 (501)
T ss_dssp -----------------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHH
T ss_pred chHHHHHHHHHHhcccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchH
Confidence 345566677777776654 346888999999999999999999999999999999999999999988764 6
Q ss_pred HHHHHHHhccC----CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHhccCcHHHHHHHHHHh
Q 007573 356 LDSELAFRQIH----SPNLVSWNTIIAAFAQHGHYEKALIFFSQMGLNGFDPDGITFLSLLSACGHAGKVNESMDLFELM 431 (597)
Q Consensus 356 ~~A~~~~~~~~----~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~ 431 (597)
+.|.++|++|. .||..+|+++|.+|++.|++++|.++|++|.+.|+.||..||+.+|.+|++.|++++|.++|++|
T Consensus 87 ~~A~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M 166 (501)
T 4g26_A 87 SRGFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHM 166 (501)
T ss_dssp HHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHH
Confidence 88999999986 69999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHhhCC---CCCCHHHHHHHHHHHHh
Q 007573 432 VKVYGIIPSSEHYTCLVDILSRAGQLEKAWQITQGMP---FEADTGVWGSLLAACVI 485 (597)
Q Consensus 432 ~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~p~~~~~~~l~~~~~~ 485 (597)
.+. |+.||..+|++|+.+|++.|+.++|.+++++|. ..|+..||+.++..+..
T Consensus 167 ~~~-G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s 222 (501)
T 4g26_A 167 VES-EVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKS 222 (501)
T ss_dssp HHT-TCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHS
T ss_pred Hhc-CCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhc
Confidence 887 999999999999999999999999999999997 78999999999988765
No 7
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.93 E-value=1.2e-23 Score=218.26 Aligned_cols=419 Identities=11% Similarity=0.001 Sum_probs=284.7
Q ss_pred hHHHHHHHHHcCCChHHHHHHHccCC--CCChhhHHHHHHHHHcCCChHHHHHHHccCCC---CCchhHHHHHHHHHhCC
Q 007573 114 SWNCMIAGCIDNDRIDDAFDYFQAMP--ERNTATYNAMISGFLKHGRLEEATRLFEQMPR---RNVISYTAMLDGFMKKG 188 (597)
Q Consensus 114 ~~~~ll~~~~~~~~~~~A~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g 188 (597)
.+......+.+.|++++|...|+++. .|++.++..+..+|.+.|++++|...++++.+ .+..+|..+..++.+.|
T Consensus 8 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g 87 (514)
T 2gw1_A 8 ALKDKGNQFFRNKKYDDAIKYYNWALELKEDPVFYSNLSACYVSVGDLKKVVEMSTKALELKPDYSKVLLRRASANEGLG 87 (514)
T ss_dssp HHHHHHHHHHHTSCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHhcCccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHh
Confidence 34455555666666666666666655 34555666666666666666666666655442 23345556666666666
Q ss_pred ChhHHHHHHHhccc---CCcchHHHHHHHHHcCCChHHHHHHHhhcCCC--CCCchHHHH---HHHHHHhcCCHHHHHHH
Q 007573 189 EVDKARALSDYMSF---KNVVSWTVMITGYVKNERFCEARELFYRMPDY--DKNVFVVTA---MITGFCKVGMLENARLL 260 (597)
Q Consensus 189 ~~~~A~~~~~~m~~---~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~--~~~~~~~~~---l~~~~~~~g~~~~A~~~ 260 (597)
++++|+..|+++.. ++......++..+........+.+.+..+... .|+...... .............+...
T Consensus 88 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (514)
T 2gw1_A 88 KFADAMFDLSVLSLNGDFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTSMASF 167 (514)
T ss_dssp CHHHHHHHHHHHHHSSSCCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCCHHHHHHH
T ss_pred hHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchhHHHHHH
Confidence 66666666655521 12223333333332222222222222111100 000000000 00000001111111112
Q ss_pred HhhcC----------CCChhHHHHHHHHHHH---cCChhHHHHHHHHhHH-----CCCCC--------CHHHHHHHHHHH
Q 007573 261 FERIQ----------PKDCVSFNAMIAGYAQ---NGVAEEALRLFSGMIK-----MDMQP--------DDATLVSVFTAC 314 (597)
Q Consensus 261 ~~~~~----------~~~~~~~~~li~~~~~---~g~~~~A~~~~~~m~~-----~g~~p--------~~~~~~~ll~~~ 314 (597)
+.... +.+...+......+.. .|++++|+..|+++.+ ....| +...+..+...+
T Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (514)
T 2gw1_A 168 FGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGIFK 247 (514)
T ss_dssp HTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHHHHH
T ss_pred HhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHHHHHH
Confidence 22111 1124455555555554 8999999999999987 32222 244666777788
Q ss_pred hccchhHHHHHHHHHHHHhCCCCcccHHHHHHHHHHhcCCHHHHHHHHhccC---CCChhhHHHHHHHHHHcCCHHHHHH
Q 007573 315 SALQLLNEGRQSHVLVIRNGFEANVSVCNAVITMYSRCGGILDSELAFRQIH---SPNLVSWNTIIAAFAQHGHYEKALI 391 (597)
Q Consensus 315 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~ 391 (597)
...|+++.|...+..+.+.... ..++..+...|...|++++|...++.+. +.+...|..+...+...|++++|+.
T Consensus 248 ~~~~~~~~A~~~~~~~l~~~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~ 325 (514)
T 2gw1_A 248 FLKNDPLGAHEDIKKAIELFPR--VNSYIYMALIMADRNDSTEYYNYFDKALKLDSNNSSVYYHRGQMNFILQNYDQAGK 325 (514)
T ss_dssp HHSSCHHHHHHHHHHHHHHCCC--HHHHHHHHHHHHTSSCCTTGGGHHHHHHTTCTTCTHHHHHHHHHHHHTTCTTHHHH
T ss_pred HHCCCHHHHHHHHHHHHhhCcc--HHHHHHHHHHHHHCCCHHHHHHHHHHHhhcCcCCHHHHHHHHHHHHHhCCHHHHHH
Confidence 8999999999999999988644 7888899999999999999999998875 4567789999999999999999999
Q ss_pred HHHHHHHCCCCCChHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHhhCC---
Q 007573 392 FFSQMGLNGFDPDGITFLSLLSACGHAGKVNESMDLFELMVKVYGIIPSSEHYTCLVDILSRAGQLEKAWQITQGMP--- 468 (597)
Q Consensus 392 ~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--- 468 (597)
.++++.+.. +.+..++..+...+...|++++|...++.+.+. .+.+...+..++..|.+.|++++|.+.++++.
T Consensus 326 ~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~ 402 (514)
T 2gw1_A 326 DFDKAKELD-PENIFPYIQLACLAYRENKFDDCETLFSEAKRK--FPEAPEVPNFFAEILTDKNDFDKALKQYDLAIELE 402 (514)
T ss_dssp HHHHHHHTC-SSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHH--STTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhC-hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--cccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhh
Confidence 999998864 345778888999999999999999999999875 23357788999999999999999999998865
Q ss_pred -CCCC----HHHHHHHHHHHHh---cCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCcHHHHHHHHHHHhCC
Q 007573 469 -FEAD----TGVWGSLLAACVI---NLNVELGELAAKKMRELDPQNSAVYVMLSNLYAAAGMWRDVTRVRLLMKEQG 537 (597)
Q Consensus 469 -~~p~----~~~~~~l~~~~~~---~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 537 (597)
..++ ...+..++..+.. .|++++|+..++++++.+|+++.++..++.+|...|++++|.+.++++.+..
T Consensus 403 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~ 479 (514)
T 2gw1_A 403 NKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDPRSEQAKIGLAQMKLQQEDIDEAITLFEESADLA 479 (514)
T ss_dssp HTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred hccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhc
Confidence 2222 4488999999999 9999999999999999999999999999999999999999999999998754
No 8
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.92 E-value=1.6e-23 Score=217.17 Aligned_cols=428 Identities=8% Similarity=-0.016 Sum_probs=321.7
Q ss_pred chHHHHHHHHHhCCChhHHHHHHhhCCC--CCcchHHHHHHHHHcCCChHHHHHHHccCC---CCChhhHHHHHHHHHcC
Q 007573 82 ITWNAIITGYWQNGFLQESKNLFQSMPV--KNIVSWNCMIAGCIDNDRIDDAFDYFQAMP---ERNTATYNAMISGFLKH 156 (597)
Q Consensus 82 ~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~ 156 (597)
..|......+.+.|++++|+..|+++.+ |+..+|..+..++.+.|++++|...++.+. +.+..++..+..+|.+.
T Consensus 7 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~ 86 (514)
T 2gw1_A 7 LALKDKGNQFFRNKKYDDAIKYYNWALELKEDPVFYSNLSACYVSVGDLKKVVEMSTKALELKPDYSKVLLRRASANEGL 86 (514)
T ss_dssp HHHHHHHHHHHHTSCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhcCccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccChHHHHHHHHHHHHHHHH
Confidence 4577788899999999999999999974 688899999999999999999999999887 55678999999999999
Q ss_pred CChHHHHHHHccCCC---CCchhHHHHHHHHHhCCChhHHHHHHHhcc----cCCcchHHHH---HHHHHcCCChHHHHH
Q 007573 157 GRLEEATRLFEQMPR---RNVISYTAMLDGFMKKGEVDKARALSDYMS----FKNVVSWTVM---ITGYVKNERFCEARE 226 (597)
Q Consensus 157 g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~----~~~~~~~~~l---l~~~~~~g~~~~a~~ 226 (597)
|++++|...|+++.. ++......++..+........+.+.+..+. .++...+..- ...............
T Consensus 87 g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (514)
T 2gw1_A 87 GKFADAMFDLSVLSLNGDFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTSMAS 166 (514)
T ss_dssp TCHHHHHHHHHHHHHSSSCCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCCHHHHHH
T ss_pred hhHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchhHHHHH
Confidence 999999999998753 334444455555544433333333332220 0111111100 011111111222222
Q ss_pred HHhhcCC--------CCCCchHHHHHHHHHHh---cCCHHHHHHHHhhcCC-----------------CChhHHHHHHHH
Q 007573 227 LFYRMPD--------YDKNVFVVTAMITGFCK---VGMLENARLLFERIQP-----------------KDCVSFNAMIAG 278 (597)
Q Consensus 227 ~~~~~~~--------~~~~~~~~~~l~~~~~~---~g~~~~A~~~~~~~~~-----------------~~~~~~~~li~~ 278 (597)
.+..... .+.+...+..+...+.. .|++++|...|+++.. .+..+|..+...
T Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (514)
T 2gw1_A 167 FFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGIF 246 (514)
T ss_dssp HHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHHHH
T ss_pred HHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHHHHH
Confidence 2222211 01123344444554554 8899999998887543 134578888999
Q ss_pred HHHcCChhHHHHHHHHhHHCCCCCCHHHHHHHHHHHhccchhHHHHHHHHHHHHhCCCCcccHHHHHHHHHHhcCCHHHH
Q 007573 279 YAQNGVAEEALRLFSGMIKMDMQPDDATLVSVFTACSALQLLNEGRQSHVLVIRNGFEANVSVCNAVITMYSRCGGILDS 358 (597)
Q Consensus 279 ~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 358 (597)
+...|++++|+..|+++.+.. |+...+..+...+...|+++.|...+..+.+.. +.+..++..+...|...|++++|
T Consensus 247 ~~~~~~~~~A~~~~~~~l~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A 323 (514)
T 2gw1_A 247 KFLKNDPLGAHEDIKKAIELF--PRVNSYIYMALIMADRNDSTEYYNYFDKALKLD-SNNSSVYYHRGQMNFILQNYDQA 323 (514)
T ss_dssp HHHSSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHTSSCCTTGGGHHHHHHTTC-TTCTHHHHHHHHHHHHTTCTTHH
T ss_pred HHHCCCHHHHHHHHHHHHhhC--ccHHHHHHHHHHHHHCCCHHHHHHHHHHHhhcC-cCCHHHHHHHHHHHHHhCCHHHH
Confidence 999999999999999998864 337778888888999999999999999988765 55677899999999999999999
Q ss_pred HHHHhccC---CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHhccCcHHHHHHHHHHhHHhc
Q 007573 359 ELAFRQIH---SPNLVSWNTIIAAFAQHGHYEKALIFFSQMGLNGFDPDGITFLSLLSACGHAGKVNESMDLFELMVKVY 435 (597)
Q Consensus 359 ~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 435 (597)
...+++.. +.+...+..+...+...|++++|+..++++.+.. +.+..++..+...+...|++++|...++.+.+..
T Consensus 324 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~ 402 (514)
T 2gw1_A 324 GKDFDKAKELDPENIFPYIQLACLAYRENKFDDCETLFSEAKRKF-PEAPEVPNFFAEILTDKNDFDKALKQYDLAIELE 402 (514)
T ss_dssp HHHHHHHHHTCSSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHc-ccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhh
Confidence 99998875 5567789999999999999999999999998753 3457788889999999999999999999988753
Q ss_pred CCCCC----hHHHHHHHHHHhh---cCCHHHHHHHHhhCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC
Q 007573 436 GIIPS----SEHYTCLVDILSR---AGQLEKAWQITQGMP--FEADTGVWGSLLAACVINLNVELGELAAKKMRELDPQN 506 (597)
Q Consensus 436 ~~~p~----~~~~~~l~~~~~~---~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~ 506 (597)
.-.++ ...+..++..|.. .|++++|.+.++++. .+.+..++..+...+...|++++|...++++++++|++
T Consensus 403 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~ 482 (514)
T 2gw1_A 403 NKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDPRSEQAKIGLAQMKLQQEDIDEAITLFEESADLARTM 482 (514)
T ss_dssp HTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSH
T ss_pred hccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhcccc
Confidence 33333 3488999999999 999999999998875 33467788999999999999999999999999999998
Q ss_pred CchHHHH
Q 007573 507 SAVYVML 513 (597)
Q Consensus 507 ~~~~~~l 513 (597)
+..+..+
T Consensus 483 ~~~~~~~ 489 (514)
T 2gw1_A 483 EEKLQAI 489 (514)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 7776655
No 9
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.92 E-value=2e-23 Score=217.78 Aligned_cols=416 Identities=11% Similarity=0.042 Sum_probs=212.0
Q ss_pred chHHHHHHHHHhCCChhHHHHHHhhCCC---CCcchHHHHHHHHHcCCChHHHHHHHccCC---CCChhhHHHHHHHHHc
Q 007573 82 ITWNAIITGYWQNGFLQESKNLFQSMPV---KNIVSWNCMIAGCIDNDRIDDAFDYFQAMP---ERNTATYNAMISGFLK 155 (597)
Q Consensus 82 ~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~ 155 (597)
..|..+...+.+.|++++|+..|+++.. .++.+|..+..++.+.|++++|.+.++++. +.+..++..+..++..
T Consensus 26 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 105 (537)
T 3fp2_A 26 VQLKNRGNHFFTAKNFNEAIKYYQYAIELDPNEPVFYSNISACYISTGDLEKVIEFTTKALEIKPDHSKALLRRASANES 105 (537)
T ss_dssp HHHHHHHHHHHHTTCCC-CHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHH
Confidence 4566667777777777777777777653 266677777777777777777777777765 4455666777777777
Q ss_pred CCChHHHHHHHccCCCCCchhHHHHHHHHHhCCChhHHHHHHHhcccC------CcchHHHHHHHHHcCCChHHHHHHHh
Q 007573 156 HGRLEEATRLFEQMPRRNVISYTAMLDGFMKKGEVDKARALSDYMSFK------NVVSWTVMITGYVKNERFCEARELFY 229 (597)
Q Consensus 156 ~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~------~~~~~~~ll~~~~~~g~~~~a~~~~~ 229 (597)
.|++++|...|+.+ ..++......+..+...+....|...++.+... ........+..+....+.+.+...+.
T Consensus 106 ~g~~~~A~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 184 (537)
T 3fp2_A 106 LGNFTDAMFDLSVL-SLNGDFDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHLEVSSVN 184 (537)
T ss_dssp HTCHHHHHHHHHHH-C-----------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHHHHHHTSC
T ss_pred cCCHHHHHHHHHHH-hcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChHHHHHHHh
Confidence 77777777777533 222222233344444455556666666666321 11222333444555555555555555
Q ss_pred hcCCCCCCch-HHHHHHHHHHh--------cCCHHHHHHHHhhcCCC---Ch-------hHHHHHHHHHHHcCChhHHHH
Q 007573 230 RMPDYDKNVF-VVTAMITGFCK--------VGMLENARLLFERIQPK---DC-------VSFNAMIAGYAQNGVAEEALR 290 (597)
Q Consensus 230 ~~~~~~~~~~-~~~~l~~~~~~--------~g~~~~A~~~~~~~~~~---~~-------~~~~~li~~~~~~g~~~~A~~ 290 (597)
......+... ....+...+.. .|++++|..+++++.+. +. .++..+...+...|++++|+.
T Consensus 185 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~ 264 (537)
T 3fp2_A 185 TSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTVDDPLRENAALALCYTGIFHFLKNNLLDAQV 264 (537)
T ss_dssp CCCSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred hccccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHCCCcchhhHHHHHHHHHHHHHHHhcccHHHHHH
Confidence 5444333222 22222222221 23566666666655432 11 134455555666666666666
Q ss_pred HHHHhHHCCCCCCHHHHHHHHHHHhccchhHHHHHHHHHHHHhCCCCcccHHHHHHHHHHhcCCHHHHHHHHhccCCCCh
Q 007573 291 LFSGMIKMDMQPDDATLVSVFTACSALQLLNEGRQSHVLVIRNGFEANVSVCNAVITMYSRCGGILDSELAFRQIHSPNL 370 (597)
Q Consensus 291 ~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 370 (597)
.|+++.+. .|+...+..+...+...|+++.|...+..+.+.. +.+..
T Consensus 265 ~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~------------------------------ 311 (537)
T 3fp2_A 265 LLQESINL--HPTPNSYIFLALTLADKENSQEFFKFFQKAVDLN-PEYPP------------------------------ 311 (537)
T ss_dssp HHHHHHHH--CCCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHC-TTCHH------------------------------
T ss_pred HHHHHHhc--CCCchHHHHHHHHHHHhcCHHHHHHHHHHHhccC-CCCHH------------------------------
Confidence 66666653 3344455555555555566666666555555543 22334
Q ss_pred hhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChHHHHHHHHH
Q 007573 371 VSWNTIIAAFAQHGHYEKALIFFSQMGLNGFDPDGITFLSLLSACGHAGKVNESMDLFELMVKVYGIIPSSEHYTCLVDI 450 (597)
Q Consensus 371 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~ 450 (597)
+|..+...+...|++++|++.++++.+.. +.+...+..+...+...|++++|...++.+.+. .+.+...+..+...
T Consensus 312 -~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~ 387 (537)
T 3fp2_A 312 -TYYHRGQMYFILQDYKNAKEDFQKAQSLN-PENVYPYIQLACLLYKQGKFTESEAFFNETKLK--FPTLPEVPTFFAEI 387 (537)
T ss_dssp -HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCTHHHHHHHHH
T ss_pred -HHHHHHHHHHhcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCChHHHHHHHHH
Confidence 44444444444555555555554444432 122334444444445555555555555544432 12223444444555
Q ss_pred HhhcCCHHHHHHHHhhCC-C---C----CCHHHHHHHHHHHHhc----------CCHHHHHHHHHHHHhcCCCCCchHHH
Q 007573 451 LSRAGQLEKAWQITQGMP-F---E----ADTGVWGSLLAACVIN----------LNVELGELAAKKMRELDPQNSAVYVM 512 (597)
Q Consensus 451 ~~~~g~~~~A~~~~~~~~-~---~----p~~~~~~~l~~~~~~~----------g~~~~a~~~~~~~~~~~p~~~~~~~~ 512 (597)
|...|++++|.+.++++. . . .....+..+...+... |++++|+..++++++.+|+++.++..
T Consensus 388 ~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~ 467 (537)
T 3fp2_A 388 LTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELDPRSEQAKIG 467 (537)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred HHHhCCHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhCCCCHHHHHH
Confidence 555555555555544432 0 0 0111223333344444 55555555555555555555555555
Q ss_pred HHHHHHhcCCcHHHHHHHHHHHh
Q 007573 513 LSNLYAAAGMWRDVTRVRLLMKE 535 (597)
Q Consensus 513 l~~~~~~~g~~~~A~~~~~~~~~ 535 (597)
++.+|...|++++|.+.++++.+
T Consensus 468 l~~~~~~~g~~~~A~~~~~~al~ 490 (537)
T 3fp2_A 468 LAQLKLQMEKIDEAIELFEDSAI 490 (537)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHhccHHHHHHHHHHHHH
Confidence 55555555555555555555544
No 10
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.92 E-value=2.6e-22 Score=204.43 Aligned_cols=333 Identities=11% Similarity=0.044 Sum_probs=229.8
Q ss_pred chhHHHHHHHHHhCCChhHHHHHHHhcc---cCCcchHHHHHHHHHcCCChHHHHHHHhhcCCCCCC-chHHHHHHHHHH
Q 007573 174 VISYTAMLDGFMKKGEVDKARALSDYMS---FKNVVSWTVMITGYVKNERFCEARELFYRMPDYDKN-VFVVTAMITGFC 249 (597)
Q Consensus 174 ~~~~~~li~~~~~~g~~~~A~~~~~~m~---~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~-~~~~~~l~~~~~ 249 (597)
+..+..++..+.+.|++++|+.+|+++. +.+..++..++.++...|++++|...++.+.+..|+ ..++..++.+|.
T Consensus 26 ~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~ 105 (450)
T 2y4t_A 26 VEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKMDFTAARLQRGHLLL 105 (450)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHH
Confidence 3445556666666666666666666552 123455555555555556666666555555553332 334444555555
Q ss_pred hcCCHHHHHHHHhhcCCC---Ch---hHHHHHHHHHHHcCChhHHHHHHHHhHHCCCCCCHHHHHHHHHHHhccchhHHH
Q 007573 250 KVGMLENARLLFERIQPK---DC---VSFNAMIAGYAQNGVAEEALRLFSGMIKMDMQPDDATLVSVFTACSALQLLNEG 323 (597)
Q Consensus 250 ~~g~~~~A~~~~~~~~~~---~~---~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a 323 (597)
+.|++++|...|+++... +. ..|..++..+...+ +......+...|++++|
T Consensus 106 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-----------------------~~~~a~~~~~~~~~~~A 162 (450)
T 2y4t_A 106 KQGKLDEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEMQR-----------------------LRSQALNAFGSGDYTAA 162 (450)
T ss_dssp HTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHH-----------------------HHHHHHHHHHHTCHHHH
T ss_pred HcCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHHH-----------------------HHHHHHHHHHcCCHHHH
Confidence 555555555555444321 11 33333332211100 11122335566777777
Q ss_pred HHHHHHHHHhCCCCcccHHHHHHHHHHhcCCHHHHHHHHhccC---CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCC
Q 007573 324 RQSHVLVIRNGFEANVSVCNAVITMYSRCGGILDSELAFRQIH---SPNLVSWNTIIAAFAQHGHYEKALIFFSQMGLNG 400 (597)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 400 (597)
...+..+.+.. +.+..++..++.+|.+.|++++|...|+++. +.+..+|..++..|...|++++|+..|+++...
T Consensus 163 ~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~- 240 (450)
T 2y4t_A 163 IAFLDKILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLKNDNTEAFYKISTLYYQLGDHELSLSEVRECLKL- 240 (450)
T ss_dssp HHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHhC-CCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-
Confidence 77777777654 4567778888899999999999999998876 567889999999999999999999999999864
Q ss_pred CCCC-hHHHHHH------------HHHHhccCcHHHHHHHHHHhHHhcCCCCC--hHHHHHHHHHHhhcCCHHHHHHHHh
Q 007573 401 FDPD-GITFLSL------------LSACGHAGKVNESMDLFELMVKVYGIIPS--SEHYTCLVDILSRAGQLEKAWQITQ 465 (597)
Q Consensus 401 ~~p~-~~~~~~l------------l~~~~~~g~~~~a~~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~ 465 (597)
.|+ ...+..+ ...+.+.|++++|...|+.+.+...-.|. ..++..++.++.+.|++++|.+.++
T Consensus 241 -~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 319 (450)
T 2y4t_A 241 -DQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSIAEYTVRSKERICHCFSKDEKPVEAIRVCS 319 (450)
T ss_dssp -CTTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHH
T ss_pred -CCChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 454 3344433 78889999999999999999875221111 4578889999999999999999999
Q ss_pred hCC-CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHH------------HHhcC-----CcHHH
Q 007573 466 GMP-FEA-DTGVWGSLLAACVINLNVELGELAAKKMRELDPQNSAVYVMLSNL------------YAAAG-----MWRDV 526 (597)
Q Consensus 466 ~~~-~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~------------~~~~g-----~~~~A 526 (597)
++. ..| +..+|..++.+|...|++++|+..++++++++|+++.++..++.+ |...| +.+++
T Consensus 320 ~a~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~y~~lg~~~~~~~~~~ 399 (450)
T 2y4t_A 320 EVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHNENDQQIREGLEKAQRLLKQSQKRDYYKILGVKRNAKKQEI 399 (450)
T ss_dssp HHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHHHHHHSCCSGGGSCSSTTCCTTHH
T ss_pred HHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHhhcccchhHHHHhCCCccCCHHHH
Confidence 875 344 688999999999999999999999999999999999999988844 44455 55666
Q ss_pred HHHHHH
Q 007573 527 TRVRLL 532 (597)
Q Consensus 527 ~~~~~~ 532 (597)
.+.+++
T Consensus 400 ~~~y~~ 405 (450)
T 2y4t_A 400 IKAYRK 405 (450)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 777765
No 11
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.91 E-value=1.1e-22 Score=212.21 Aligned_cols=428 Identities=10% Similarity=0.051 Sum_probs=304.2
Q ss_pred CcchHHHHHHHHHhcCChHHHHHHHhhcCC---CCcchHHHHHHHHHhCCChhHHHHHHhhCCC--C-CcchHHHHHHHH
Q 007573 49 YVFVNNAKISALSRAGKISAARQLFDQMTT---KDVITWNAIITGYWQNGFLQESKNLFQSMPV--K-NIVSWNCMIAGC 122 (597)
Q Consensus 49 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~ll~~~ 122 (597)
....+..+...+.+.|++++|...|+++.. .++.+|..+..+|.+.|++++|+..|+++.+ | +..++..+..++
T Consensus 24 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 103 (537)
T 3fp2_A 24 YAVQLKNRGNHFFTAKNFNEAIKYYQYAIELDPNEPVFYSNISACYISTGDLEKVIEFTTKALEIKPDHSKALLRRASAN 103 (537)
T ss_dssp HHHHHHHHHHHHHHTTCCC-CHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCchHHHHHHHHHHH
Confidence 346788899999999999999999999865 4667899999999999999999999999863 3 778899999999
Q ss_pred HcCCChHHHHHHHccCCCCChhhHHHHHHHHHcCCChHHHHHHHccCCCC------CchhHHHHHHHHHhCCChhHHHHH
Q 007573 123 IDNDRIDDAFDYFQAMPERNTATYNAMISGFLKHGRLEEATRLFEQMPRR------NVISYTAMLDGFMKKGEVDKARAL 196 (597)
Q Consensus 123 ~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~------~~~~~~~li~~~~~~g~~~~A~~~ 196 (597)
...|++++|...++.+ ..++......+..+...+....|...++++... ........+..+....+.+.+...
T Consensus 104 ~~~g~~~~A~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 182 (537)
T 3fp2_A 104 ESLGNFTDAMFDLSVL-SLNGDFDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHLEVSS 182 (537)
T ss_dssp HHHTCHHHHHHHHHHH-C-----------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHHHHHHT
T ss_pred HHcCCHHHHHHHHHHH-hcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChHHHHHH
Confidence 9999999999999744 333333334455666667778899999887642 222345556677788888888887
Q ss_pred HHhcccCCcc---hHHHHHHHHHcC--------CChHHHHHHHhhcCCCCCCc--------hHHHHHHHHHHhcCCHHHH
Q 007573 197 SDYMSFKNVV---SWTVMITGYVKN--------ERFCEARELFYRMPDYDKNV--------FVVTAMITGFCKVGMLENA 257 (597)
Q Consensus 197 ~~~m~~~~~~---~~~~ll~~~~~~--------g~~~~a~~~~~~~~~~~~~~--------~~~~~l~~~~~~~g~~~~A 257 (597)
+......+.. ....+...+... |++++|..+++.+.+..|+. .++..+...+...|++++|
T Consensus 183 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A 262 (537)
T 3fp2_A 183 VNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTVDDPLRENAALALCYTGIFHFLKNNLLDA 262 (537)
T ss_dssp SCCCCSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HhhccccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHCCCcchhhHHHHHHHHHHHHHHHhcccHHHH
Confidence 7777655543 444444444333 47899999999999877763 2466777888999999999
Q ss_pred HHHHhhcCC--CChhHHHHHHHHHHHcCChhHHHHHHHHhHHCCCCCCHHHHHHHHHHHhccchhHHHHHHHHHHHHhCC
Q 007573 258 RLLFERIQP--KDCVSFNAMIAGYAQNGVAEEALRLFSGMIKMDMQPDDATLVSVFTACSALQLLNEGRQSHVLVIRNGF 335 (597)
Q Consensus 258 ~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~ 335 (597)
...|++... ++...|..+...+...|++++|+..|+++.+.. +.+..++..+...+...|++++|...+..+.+..
T Consensus 263 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~- 340 (537)
T 3fp2_A 263 QVLLQESINLHPTPNSYIFLALTLADKENSQEFFKFFQKAVDLN-PEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLN- 340 (537)
T ss_dssp HHHHHHHHHHCCCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHhcCCCchHHHHHHHHHHHhcCHHHHHHHHHHHhccC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC-
Confidence 999998753 457789999999999999999999999998764 3356667777777777788888877777776654
Q ss_pred CCcccHHHHHHHHHHhcCCHHHHHHHHhccCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHH
Q 007573 336 EANVSVCNAVITMYSRCGGILDSELAFRQIHSPNLVSWNTIIAAFAQHGHYEKALIFFSQMGLNGFDPDGITFLSLLSAC 415 (597)
Q Consensus 336 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~ 415 (597)
+.+...|..+...+...|++++|++.++++.+.. +.+...+..+...+
T Consensus 341 -------------------------------~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~ 388 (537)
T 3fp2_A 341 -------------------------------PENVYPYIQLACLLYKQGKFTESEAFFNETKLKF-PTLPEVPTFFAEIL 388 (537)
T ss_dssp -------------------------------TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHH
T ss_pred -------------------------------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHH
Confidence 2233445555556666666666666666666542 33345666666666
Q ss_pred hccCcHHHHHHHHHHhHHhcCCCC----ChHHHHHHHHHHhhc----------CCHHHHHHHHhhCC--CCCCHHHHHHH
Q 007573 416 GHAGKVNESMDLFELMVKVYGIIP----SSEHYTCLVDILSRA----------GQLEKAWQITQGMP--FEADTGVWGSL 479 (597)
Q Consensus 416 ~~~g~~~~a~~~~~~~~~~~~~~p----~~~~~~~l~~~~~~~----------g~~~~A~~~~~~~~--~~p~~~~~~~l 479 (597)
...|++++|...++.+.+...-.+ ....+..+...|.+. |++++|...++++. .+.+...+..+
T Consensus 389 ~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l 468 (537)
T 3fp2_A 389 TDRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELDPRSEQAKIGL 468 (537)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HHhCCHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence 667777777777766654321111 122234445666666 88888888887765 33456788888
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhcCCCCCchHH
Q 007573 480 LAACVINLNVELGELAAKKMRELDPQNSAVYV 511 (597)
Q Consensus 480 ~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~ 511 (597)
...+...|++++|...+++++++.|.++....
T Consensus 469 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 500 (537)
T 3fp2_A 469 AQLKLQMEKIDEAIELFEDSAILARTMDEKLQ 500 (537)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHC--CHHHHH
T ss_pred HHHHHHhccHHHHHHHHHHHHHhCCCcHHHHH
Confidence 88899999999999999999999988765433
No 12
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.90 E-value=1.2e-21 Score=199.47 Aligned_cols=361 Identities=11% Similarity=0.043 Sum_probs=244.1
Q ss_pred CCChhhHHHHHHHHHcCCChHHHHHHHccCCC---CCchhHHHHHHHHHhCCChhHHHHHHHhccc---CCcchHHHHHH
Q 007573 140 ERNTATYNAMISGFLKHGRLEEATRLFEQMPR---RNVISYTAMLDGFMKKGEVDKARALSDYMSF---KNVVSWTVMIT 213 (597)
Q Consensus 140 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~---~~~~~~~~ll~ 213 (597)
+.+..++..++..|.+.|++++|..+|+++.+ .+..+|..+..++...|++++|+..|+++.. .+..++..++.
T Consensus 23 p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~ 102 (450)
T 2y4t_A 23 MADVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKMDFTAARLQRGH 102 (450)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHH
Confidence 44677899999999999999999999998763 4678899999999999999999999999843 35678899999
Q ss_pred HHHcCCChHHHHHHHhhcCCCCCCc----hHHHHHHH------------HHHhcCCHHHHHHHHhhcC---CCChhHHHH
Q 007573 214 GYVKNERFCEARELFYRMPDYDKNV----FVVTAMIT------------GFCKVGMLENARLLFERIQ---PKDCVSFNA 274 (597)
Q Consensus 214 ~~~~~g~~~~a~~~~~~~~~~~~~~----~~~~~l~~------------~~~~~g~~~~A~~~~~~~~---~~~~~~~~~ 274 (597)
+|...|++++|.+.|+.+.+..|+. ..+..++. .+.+.|++++|...|+++. +.+...+..
T Consensus 103 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~ 182 (450)
T 2y4t_A 103 LLLKQGKLDEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVCVWDAELREL 182 (450)
T ss_dssp HHHHTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHH
Confidence 9999999999999999999977764 44554533 3666777777777776643 345566667
Q ss_pred HHHHHHHcCChhHHHHHHHHhHHCCCCCCHHHHHHHHHHHhccchhHHHHHHHHHHHHhCCCCcccHHHHHHHHHHhcCC
Q 007573 275 MIAGYAQNGVAEEALRLFSGMIKMDMQPDDATLVSVFTACSALQLLNEGRQSHVLVIRNGFEANVSVCNAVITMYSRCGG 354 (597)
Q Consensus 275 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 354 (597)
++..|.+.|++++|+..|+++.+.. +.+..++..+...+...|+.++|...++.+.+.. +.+...+..+... .
T Consensus 183 l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~~~~~-~---- 255 (450)
T 2y4t_A 183 RAECFIKEGEPRKAISDLKAASKLK-NDNTEAFYKISTLYYQLGDHELSLSEVRECLKLD-QDHKRCFAHYKQV-K---- 255 (450)
T ss_dssp HHHHHHHTTCGGGGHHHHHHHHHHH-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH-H----
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CChHHHHHHHHHH-H----
Confidence 7777777777777777777666532 2234455555555555555555555555555432 1111111111000 0
Q ss_pred HHHHHHHHhccCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC-----hHHHHHHHHHHhccCcHHHHHHHHH
Q 007573 355 ILDSELAFRQIHSPNLVSWNTIIAAFAQHGHYEKALIFFSQMGLNGFDPD-----GITFLSLLSACGHAGKVNESMDLFE 429 (597)
Q Consensus 355 ~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-----~~~~~~ll~~~~~~g~~~~a~~~~~ 429 (597)
....+..+...+...|++++|+..|+++.+. .|+ ...+..+..++.+.|++++|...++
T Consensus 256 --------------~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~--~p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 319 (450)
T 2y4t_A 256 --------------KLNKLIESAEELIRDGRYTDATSKYESVMKT--EPSIAEYTVRSKERICHCFSKDEKPVEAIRVCS 319 (450)
T ss_dssp --------------HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CCSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHH
T ss_pred --------------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 0001122367777888888888888888764 344 3356777778888888888888888
Q ss_pred HhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHhhCC-CCCC-HHHHHHHHHH------------HHhcC-----CHH
Q 007573 430 LMVKVYGIIPSSEHYTCLVDILSRAGQLEKAWQITQGMP-FEAD-TGVWGSLLAA------------CVINL-----NVE 490 (597)
Q Consensus 430 ~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p~-~~~~~~l~~~------------~~~~g-----~~~ 490 (597)
.+.+. .+.+...+..++.+|...|++++|.+.++++. ..|+ ...+..+..+ |...| +.+
T Consensus 320 ~a~~~--~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~y~~lg~~~~~~~~ 397 (450)
T 2y4t_A 320 EVLQM--EPDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHNENDQQIREGLEKAQRLLKQSQKRDYYKILGVKRNAKKQ 397 (450)
T ss_dssp HHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHHHHHHSCCSGGGSCSSTTCCTT
T ss_pred HHHHh--CcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHhhcccchhHHHHhCCCccCCHH
Confidence 87753 23357778888888888888888888887764 4454 4555555532 33334 567
Q ss_pred HHHHHHHH-HHhcCCCCCc----------hHHHHHHHHHhcCCcHH
Q 007573 491 LGELAAKK-MRELDPQNSA----------VYVMLSNLYAAAGMWRD 525 (597)
Q Consensus 491 ~a~~~~~~-~~~~~p~~~~----------~~~~l~~~~~~~g~~~~ 525 (597)
++.+.+++ +++..|++.. .+..+..+|...|+.++
T Consensus 398 ~~~~~y~~~~l~~~pd~~~~~~~~~~a~~~~~~i~~ay~~L~d~~~ 443 (450)
T 2y4t_A 398 EIIKAYRKLALQWHPDNFQNEEEKKKAEKKFIDIAAAKEVLSDPEM 443 (450)
T ss_dssp HHHHHHHHHHHHSCGGGCCSHHHHHHHHHHHHHHHHHHHHSSGGGG
T ss_pred HHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHHHHhCCHHH
Confidence 78888886 7777777522 34445555555555443
No 13
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.86 E-value=7.6e-19 Score=172.64 Aligned_cols=305 Identities=12% Similarity=0.035 Sum_probs=235.9
Q ss_pred CcchHHHHHHHHHcCCChHHHHHHHhhcCCCCC-CchHHHHHHHHHHhcCCHHHHHHHHhhcC---CCChhHHHHHHHHH
Q 007573 204 NVVSWTVMITGYVKNERFCEARELFYRMPDYDK-NVFVVTAMITGFCKVGMLENARLLFERIQ---PKDCVSFNAMIAGY 279 (597)
Q Consensus 204 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~ 279 (597)
|+..+..+...+...|++++|...|+.+.+..| +..++..+...+...|++++|...|+++. +.+...|..+...+
T Consensus 2 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 81 (359)
T 3ieg_A 2 DVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIALKMDFTAARLQRGHLL 81 (359)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcchHHHHHHHHH
Confidence 345677888889999999999999999888665 45678888899999999999999998764 34667888999999
Q ss_pred HHcCChhHHHHHHHHhHHCCCCC---CHHH-HHHHHHHHhccchhHHHHHHHHHHHHhCCCCcccHHHHHHHHHHhcCCH
Q 007573 280 AQNGVAEEALRLFSGMIKMDMQP---DDAT-LVSVFTACSALQLLNEGRQSHVLVIRNGFEANVSVCNAVITMYSRCGGI 355 (597)
Q Consensus 280 ~~~g~~~~A~~~~~~m~~~g~~p---~~~~-~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 355 (597)
...|++++|+..|+++.+. .| +... +..+.. .... ..+..+...+...|++
T Consensus 82 ~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~~~l~~-------~~~~----------------~~~~~~a~~~~~~~~~ 136 (359)
T 3ieg_A 82 LKQGKLDEAEDDFKKVLKS--NPSEQEEKEAESQLVK-------ADEM----------------QRLRSQALDAFDGADY 136 (359)
T ss_dssp HHHTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHH-------HHHH----------------HHHHHHHHHHHHTTCH
T ss_pred HHcCChHHHHHHHHHHHhc--CCcccChHHHHHHHHH-------HHHH----------------HHHHHHHHHHHHccCH
Confidence 9999999999999988874 44 2222 211111 1000 1123345677788888
Q ss_pred HHHHHHHhccC---CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHhccCcHHHHHHHHHHhH
Q 007573 356 LDSELAFRQIH---SPNLVSWNTIIAAFAQHGHYEKALIFFSQMGLNGFDPDGITFLSLLSACGHAGKVNESMDLFELMV 432 (597)
Q Consensus 356 ~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~ 432 (597)
++|...++.+. +.+...+..+...+...|++++|+..++++.+.. +.+..++..+...+...|++++|...++.+.
T Consensus 137 ~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~ 215 (359)
T 3ieg_A 137 TAAITFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKLK-SDNTEAFYKISTLYYQLGDHELSLSEVRECL 215 (359)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-SCCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 88888888765 5567788888888889999999999999888653 4457788888888888999999999998887
Q ss_pred HhcCCCCChHHHH------------HHHHHHhhcCCHHHHHHHHhhCC-CCCC-H----HHHHHHHHHHHhcCCHHHHHH
Q 007573 433 KVYGIIPSSEHYT------------CLVDILSRAGQLEKAWQITQGMP-FEAD-T----GVWGSLLAACVINLNVELGEL 494 (597)
Q Consensus 433 ~~~~~~p~~~~~~------------~l~~~~~~~g~~~~A~~~~~~~~-~~p~-~----~~~~~l~~~~~~~g~~~~a~~ 494 (597)
+.. +.+...+. .++..+.+.|++++|.+.++++. ..|+ . ..+..+...+...|++++|+.
T Consensus 216 ~~~--~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~ 293 (359)
T 3ieg_A 216 KLD--QDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSVAEYTVRSKERICHCFSKDEKPVEAIR 293 (359)
T ss_dssp HHC--TTCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred hhC--ccchHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHccCHHHHHH
Confidence 642 22233322 33667889999999999998865 3344 3 235567788999999999999
Q ss_pred HHHHHHhcCCCCCchHHHHHHHHHhcCCcHHHHHHHHHHHhC
Q 007573 495 AAKKMRELDPQNSAVYVMLSNLYAAAGMWRDVTRVRLLMKEQ 536 (597)
Q Consensus 495 ~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 536 (597)
.++++++.+|+++.++..++.+|...|++++|.+.++++.+.
T Consensus 294 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~ 335 (359)
T 3ieg_A 294 ICSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEH 335 (359)
T ss_dssp HHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 999999999999999999999999999999999999998764
No 14
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.86 E-value=2.4e-19 Score=176.29 Aligned_cols=310 Identities=11% Similarity=0.043 Sum_probs=235.6
Q ss_pred CchhHHHHHHHHHhCCChhHHHHHHHhcc---cCCcchHHHHHHHHHcCCChHHHHHHHhhcCCCCC-CchHHHHHHHHH
Q 007573 173 NVISYTAMLDGFMKKGEVDKARALSDYMS---FKNVVSWTVMITGYVKNERFCEARELFYRMPDYDK-NVFVVTAMITGF 248 (597)
Q Consensus 173 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~---~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~-~~~~~~~l~~~~ 248 (597)
|+..+..+...+...|++++|+..|+++. +.+..++..+..++...|++++|...++.+.+..| +...+..+...+
T Consensus 2 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 81 (359)
T 3ieg_A 2 DVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIALKMDFTAARLQRGHLL 81 (359)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcchHHHHHHHHH
Confidence 45678889999999999999999999983 33567889999999999999999999999988666 566889999999
Q ss_pred HhcCCHHHHHHHHhhcCCCCh------hHHHHH------------HHHHHHcCChhHHHHHHHHhHHCCCCCCHHHHHHH
Q 007573 249 CKVGMLENARLLFERIQPKDC------VSFNAM------------IAGYAQNGVAEEALRLFSGMIKMDMQPDDATLVSV 310 (597)
Q Consensus 249 ~~~g~~~~A~~~~~~~~~~~~------~~~~~l------------i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l 310 (597)
...|++++|...|+++.+.++ ..+..+ ...+...|++++|+..++++.+
T Consensus 82 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~------------- 148 (359)
T 3ieg_A 82 LKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILE------------- 148 (359)
T ss_dssp HHHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-------------
T ss_pred HHcCChHHHHHHHHHHHhcCCcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHH-------------
Confidence 999999999999998765333 344444 3444555555555555555444
Q ss_pred HHHHhccchhHHHHHHHHHHHHhCCCCcccHHHHHHHHHHhcCCHHHHHHHHhccC---CCChhhHHHHHHHHHHcCCHH
Q 007573 311 FTACSALQLLNEGRQSHVLVIRNGFEANVSVCNAVITMYSRCGGILDSELAFRQIH---SPNLVSWNTIIAAFAQHGHYE 387 (597)
Q Consensus 311 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~ 387 (597)
.. +.+..++..+...+...|++++|...++.+. +.+...|..+...+...|+++
T Consensus 149 ----------------------~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~ 205 (359)
T 3ieg_A 149 ----------------------VC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLKSDNTEAFYKISTLYYQLGDHE 205 (359)
T ss_dssp ----------------------HC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSCCHHHHHHHHHHHHHHTCHH
T ss_pred ----------------------hC-CCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHH
Confidence 32 3344556666667777777777777776654 455677788888888888888
Q ss_pred HHHHHHHHHHHCCCCCC-hHHHH------------HHHHHHhccCcHHHHHHHHHHhHHhcCCCCCh--HHHHHHHHHHh
Q 007573 388 KALIFFSQMGLNGFDPD-GITFL------------SLLSACGHAGKVNESMDLFELMVKVYGIIPSS--EHYTCLVDILS 452 (597)
Q Consensus 388 ~A~~~~~~m~~~g~~p~-~~~~~------------~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~--~~~~~l~~~~~ 452 (597)
+|...+++..+. .|+ ...+. .+...+.+.|++++|...++.+.+...-.+.. ..+..+...+.
T Consensus 206 ~A~~~~~~a~~~--~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~ 283 (359)
T 3ieg_A 206 LSLSEVRECLKL--DQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSVAEYTVRSKERICHCFS 283 (359)
T ss_dssp HHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhh--CccchHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHH
Confidence 888888888764 333 23222 23566888999999999999988752221111 33556788999
Q ss_pred hcCCHHHHHHHHhhCC-CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhc
Q 007573 453 RAGQLEKAWQITQGMP-FEA-DTGVWGSLLAACVINLNVELGELAAKKMRELDPQNSAVYVMLSNLYAAA 520 (597)
Q Consensus 453 ~~g~~~~A~~~~~~~~-~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 520 (597)
..|++++|.+.+++.. ..| +..+|..++..+...|++++|...++++++++|+++.+...+..++...
T Consensus 284 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~ 353 (359)
T 3ieg_A 284 KDEKPVEAIRICSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEHNENDQQIREGLEKAQRLL 353 (359)
T ss_dssp HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHH
T ss_pred HccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHH
Confidence 9999999999998876 344 6789999999999999999999999999999999988888887776543
No 15
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.83 E-value=3.2e-18 Score=166.09 Aligned_cols=285 Identities=10% Similarity=-0.032 Sum_probs=188.1
Q ss_pred CchHHHHHHHHHHhcCCHHHHHHHHhhcCC---CChhHHHHHHHHHHHcCChhHHHHHHHHhHHCCCCCCHHHHHHHHHH
Q 007573 237 NVFVVTAMITGFCKVGMLENARLLFERIQP---KDCVSFNAMIAGYAQNGVAEEALRLFSGMIKMDMQPDDATLVSVFTA 313 (597)
Q Consensus 237 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~ 313 (597)
+..++..++..+...|++++|.++|+++.+ .+...+..++..+...|++++|+.+++++.+.. +.+...+..+...
T Consensus 21 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~ 99 (330)
T 3hym_B 21 NLDVVVSLAERHYYNCDFKMCYKLTSVVMEKDPFHASCLPVHIGTLVELNKANELFYLSHKLVDLY-PSNPVSWFAVGCY 99 (330)
T ss_dssp CCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSTHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHHHH
Confidence 344444455555555555555555554322 233344444555555555555555555555432 1223344444444
Q ss_pred Hhccc-hhHHHHHHHHHHHHhCCCCcccHHHHHHHHHHhcCCHHHHHHHHhccC---CCChhhHHHHHHHHHHcCCHHHH
Q 007573 314 CSALQ-LLNEGRQSHVLVIRNGFEANVSVCNAVITMYSRCGGILDSELAFRQIH---SPNLVSWNTIIAAFAQHGHYEKA 389 (597)
Q Consensus 314 ~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A 389 (597)
+...| +.++|...++.+.+.. +.+...+..+...+...|++++|...+++.. +.+...+..+...+...|++++|
T Consensus 100 ~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A 178 (330)
T 3hym_B 100 YLMVGHKNEHARRYLSKATTLE-KTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKGCHLPMLYIGLEYGLTNNSKLA 178 (330)
T ss_dssp HHHSCSCHHHHHHHHHHHHTTC-TTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCSHHHHHHHHHHHHTTCHHHH
T ss_pred HHHhhhhHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhHHHH
Confidence 45555 5555555555554443 3345556667777777777777777776654 34456677778888888888888
Q ss_pred HHHHHHHHHCCCCCChHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCC-------CCChHHHHHHHHHHhhcCCHHHHHH
Q 007573 390 LIFFSQMGLNGFDPDGITFLSLLSACGHAGKVNESMDLFELMVKVYGI-------IPSSEHYTCLVDILSRAGQLEKAWQ 462 (597)
Q Consensus 390 ~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~-------~p~~~~~~~l~~~~~~~g~~~~A~~ 462 (597)
.+.++++.+.. +.+...+..+...+...|++++|...++.+.+...- +.....+..++..|...|++++|.+
T Consensus 179 ~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 257 (330)
T 3hym_B 179 ERFFSQALSIA-PEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALD 257 (330)
T ss_dssp HHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHhC-CCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHHHHH
Confidence 88888887653 345677778888888888888888888887764211 3335688888888889999999998
Q ss_pred HHhhCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHH-HhcCCcH
Q 007573 463 ITQGMP--FEADTGVWGSLLAACVINLNVELGELAAKKMRELDPQNSAVYVMLSNLY-AAAGMWR 524 (597)
Q Consensus 463 ~~~~~~--~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~-~~~g~~~ 524 (597)
.+++.. .+.+...+..+...+...|++++|...++++++++|+++..+..++.++ ...|+.+
T Consensus 258 ~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~g~~~ 322 (330)
T 3hym_B 258 YHRQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTALGLRRDDTFSVTMLGHCIEMYIGDSE 322 (330)
T ss_dssp HHHHHHHHSTTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTCSCCHHHHHHHHHHHHTTTTC--
T ss_pred HHHHHHhhCccchHHHHHHHHHHHHhccHHHHHHHHHHHHccCCCchHHHHHHHHHHHHHhCchh
Confidence 888765 3345678888888899999999999999999999999888888888888 4555543
No 16
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.83 E-value=2.1e-18 Score=166.77 Aligned_cols=287 Identities=13% Similarity=0.176 Sum_probs=122.3
Q ss_pred HhcCChHHHHHHHhhcCCCCcchHHHHHHHHHhCCChhHHHHHHhhCCCCCcchHHHHHHHHHcCCChHHHHHHHccCC-
Q 007573 61 SRAGKISAARQLFDQMTTKDVITWNAIITGYWQNGFLQESKNLFQSMPVKNIVSWNCMIAGCIDNDRIDDAFDYFQAMP- 139 (597)
Q Consensus 61 ~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~- 139 (597)
-+.|++++|.+.++++..|+ +|..|+.++.+.|++++|++.|.+. +|..+|..++.++...|++++|..+++...
T Consensus 14 ~~~~~ld~A~~fae~~~~~~--vWs~La~A~l~~g~~~eAIdsfika--~D~~~y~~V~~~ae~~g~~EeAi~yl~~ark 89 (449)
T 1b89_A 14 EHIGNLDRAYEFAERCNEPA--VWSQLAKAQLQKGMVKEAIDSYIKA--DDPSSYMEVVQAANTSGNWEELVKYLQMARK 89 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHccCHHHHHHHHHhCCChH--HHHHHHHHHHHcCCHHHHHHHHHcC--CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 36788999999999996664 8999999999999999999999765 577799999999999999999999887776
Q ss_pred -CCChhhHHHHHHHHHcCCChHHHHHHHccCCCCCchhHHHHHHHHHhCCChhHHHHHHHhcccCCcchHHHHHHHHHcC
Q 007573 140 -ERNTATYNAMISGFLKHGRLEEATRLFEQMPRRNVISYTAMLDGFMKKGEVDKARALSDYMSFKNVVSWTVMITGYVKN 218 (597)
Q Consensus 140 -~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~ll~~~~~~ 218 (597)
.+++.+.+.|+.+|.+.|+++++.++++. |+..+|+.+...|...|++++|..+|..+ ..|..++.++.+.
T Consensus 90 ~~~~~~i~~~Li~~Y~Klg~l~e~e~f~~~---pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a-----~n~~~LA~~L~~L 161 (449)
T 1b89_A 90 KARESYVETELIFALAKTNRLAELEEFING---PNNAHIQQVGDRCYDEKMYDAAKLLYNNV-----SNFGRLASTLVHL 161 (449)
T ss_dssp -------------------CHHHHTTTTTC---C----------------CTTTHHHHHHHT-----TCHHHHHHHHHTT
T ss_pred hCccchhHHHHHHHHHHhCCHHHHHHHHcC---CcHHHHHHHHHHHHHcCCHHHHHHHHHHh-----hhHHHHHHHHHHh
Confidence 44568899999999999999999988864 77779999999999999999999999977 5888999999999
Q ss_pred CChHHHHHHHhhcCCCCCCchHHHHHHHHHHhcCCHHHHHHHHhhcCCCChhHHHHHHHHHHHcCChhHHHHHHHHhHHC
Q 007573 219 ERFCEARELFYRMPDYDKNVFVVTAMITGFCKVGMLENARLLFERIQPKDCVSFNAMIAGYAQNGVAEEALRLFSGMIKM 298 (597)
Q Consensus 219 g~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 298 (597)
|++++|.+.+..+ .++.+|..++.+|...|+++.|......+. .++.....++..|.+.|++++|+.+++.....
T Consensus 162 g~yq~AVea~~KA----~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L~-~~ad~l~~lv~~Yek~G~~eEai~lLe~aL~l 236 (449)
T 1b89_A 162 GEYQAAVDGARKA----NSTRTWKEVCFACVDGKEFRLAQMCGLHIV-VHADELEELINYYQDRGYFEELITMLEAALGL 236 (449)
T ss_dssp TCHHHHHHHHHHH----TCHHHHHHHHHHHHHTTCHHHHHHTTTTTT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS
T ss_pred ccHHHHHHHHHHc----CCchhHHHHHHHHHHcCcHHHHHHHHHHHH-hCHhhHHHHHHHHHHCCCHHHHHHHHHHHhCC
Confidence 9999999999888 367888999999999999999977776655 45555556888888999999999988887754
Q ss_pred CCCCCHHHHHHHHHHHh--ccchhHHHHHHHHHHHHhCCCCcccHHHHHHHHHHhcCCHHHHHHHHhccCCCChhhHHHH
Q 007573 299 DMQPDDATLVSVFTACS--ALQLLNEGRQSHVLVIRNGFEANVSVCNAVITMYSRCGGILDSELAFRQIHSPNLVSWNTI 376 (597)
Q Consensus 299 g~~p~~~~~~~ll~~~~--~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l 376 (597)
. +-....|+.+--.++ +.+++.+..+.|. ..=++.+.++.. .+...|..+
T Consensus 237 e-~ah~~~ftel~il~~ky~p~k~~ehl~~~~----------------------~~ini~k~~~~~-----~~~~~w~e~ 288 (449)
T 1b89_A 237 E-RAHMGMFTELAILYSKFKPQKMREHLELFW----------------------SRVNIPKVLRAA-----EQAHLWAEL 288 (449)
T ss_dssp T-TCCHHHHHHHHHHHHTTCHHHHHHHHHHHS----------------------TTSCHHHHHHHH-----HTTTCHHHH
T ss_pred c-HHHHHHHHHHHHHHHhcCHHHHHHHHHHHH----------------------HHhcCcHHHHHH-----HHHHHHHHH
Confidence 3 223334443333332 2222222222211 111111111111 245578888
Q ss_pred HHHHHHcCCHHHHHHH
Q 007573 377 IAAFAQHGHYEKALIF 392 (597)
Q Consensus 377 i~~~~~~g~~~~A~~~ 392 (597)
+-.|...++++.|...
T Consensus 289 ~~ly~~~~e~d~A~~t 304 (449)
T 1b89_A 289 VFLYDKYEEYDNAIIT 304 (449)
T ss_dssp HHHHHHTTCHHHHHHH
T ss_pred HHHHHhhchHHHHHHH
Confidence 8888888888887764
No 17
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.82 E-value=6.7e-16 Score=166.00 Aligned_cols=349 Identities=14% Similarity=0.123 Sum_probs=274.3
Q ss_pred ChhhHHHHHHHHHcCCChHHHHHHHccCCC-CC-----chhHHHHHHHHHhCCChhHHHHHHHhcccCCcchHHHHHHHH
Q 007573 142 NTATYNAMISGFLKHGRLEEATRLFEQMPR-RN-----VISYTAMLDGFMKKGEVDKARALSDYMSFKNVVSWTVMITGY 215 (597)
Q Consensus 142 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~-----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~ll~~~ 215 (597)
++.--...+..|...|.+.+|+++++++.- ++ ...-+.++.+..+. +..+..++..+....+ ...+...+
T Consensus 984 ~PeeVs~~vKaf~~aglp~EaieLLEKivl~~s~fs~n~~LqnlLi~tAIka-D~~Rv~eyI~kLd~~d---~~eIA~Ia 1059 (1630)
T 1xi4_A 984 DPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSEHRNLQNLLILTAIKA-DRTRVMEYINRLDNYD---APDIANIA 1059 (1630)
T ss_pred CHHHhHHHHHHHHhCCCHHHHHHHHHHHHcCCCcccccHHHHHHHHHHHHHh-ChhhHHHHHHHhhhcc---HHHHHHHH
Confidence 444456678888899999999999998862 22 24456677776666 5566666666554333 45578889
Q ss_pred HcCCChHHHHHHHhhcCCCCCCchHHHHHHHHHHhcCCHHHHHHHHhhcCCCChhHHHHHHHHHHHcCChhHHHHHHHHh
Q 007573 216 VKNERFCEARELFYRMPDYDKNVFVVTAMITGFCKVGMLENARLLFERIQPKDCVSFNAMIAGYAQNGVAEEALRLFSGM 295 (597)
Q Consensus 216 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 295 (597)
...|.+++|..+|++... .....+.+ +-..|++++|.++.+++ .++.+|..+..++.+.|++++|+..|.+.
T Consensus 1060 i~lglyEEAf~IYkKa~~---~~~A~~VL---ie~i~nldrAiE~Aerv--n~p~vWsqLAKAql~~G~~kEAIdsYiKA 1131 (1630)
T 1xi4_A 1060 ISNELFEEAFAIFRKFDV---NTSAVQVL---IEHIGNLDRAYEFAERC--NEPAVWSQLAKAQLQKGMVKEAIDSYIKA 1131 (1630)
T ss_pred HhCCCHHHHHHHHHHcCC---HHHHHHHH---HHHHhhHHHHHHHHHhc--CCHHHHHHHHHHHHhCCCHHHHHHHHHhc
Confidence 999999999999999742 11112222 33788999999999977 44678999999999999999999999653
Q ss_pred HHCCCCCCHHHHHHHHHHHhccchhHHHHHHHHHHHHhCCCCcccHHHHHHHHHHhcCCHHHHHHHHhccCCCChhhHHH
Q 007573 296 IKMDMQPDDATLVSVFTACSALQLLNEGRQSHVLVIRNGFEANVSVCNAVITMYSRCGGILDSELAFRQIHSPNLVSWNT 375 (597)
Q Consensus 296 ~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 375 (597)
-|...|..++.+|.+.|+++++.+++....+.. ++..+.+.++.+|++.+++++...+. ..++...|..
T Consensus 1132 ------dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~--~e~~Idt~LafaYAKl~rleele~fI---~~~n~ad~~~ 1200 (1630)
T 1xi4_A 1132 ------DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFALAKTNRLAELEEFI---NGPNNAHIQQ 1200 (1630)
T ss_pred ------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc--ccccccHHHHHHHHhhcCHHHHHHHH---hCCCHHHHHH
Confidence 467778889999999999999999999888765 34444446999999999998755553 4567778888
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcC
Q 007573 376 IIAAFAQHGHYEKALIFFSQMGLNGFDPDGITFLSLLSACGHAGKVNESMDLFELMVKVYGIIPSSEHYTCLVDILSRAG 455 (597)
Q Consensus 376 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g 455 (597)
+...|...|++++|..+|... ..|..+..++.+.|++++|.+.+++. .+..+|..+..+|...|
T Consensus 1201 iGd~le~eg~YeeA~~~Y~kA---------~ny~rLA~tLvkLge~q~AIEaarKA-------~n~~aWkev~~acve~~ 1264 (1630)
T 1xi4_A 1201 VGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVDGARKA-------NSTRTWKEVCFACVDGK 1264 (1630)
T ss_pred HHHHHHhcCCHHHHHHHHHhh---------hHHHHHHHHHHHhCCHHHHHHHHHHh-------CCHHHHHHHHHHHhhhh
Confidence 999999999999999999985 37899999999999999999998865 25688999999999999
Q ss_pred CHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhc--CCcHHHHHHHH
Q 007573 456 QLEKAWQITQGMPFEADTGVWGSLLAACVINLNVELGELAAKKMRELDPQNSAVYVMLSNLYAAA--GMWRDVTRVRL 531 (597)
Q Consensus 456 ~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~--g~~~~A~~~~~ 531 (597)
++..|......+. .++..+..++..|...|.+++|+.+++.++.++|.+...+.-++.+|.+- ++..++.++|.
T Consensus 1265 Ef~LA~~cgl~Ii--v~~deLeeli~yYe~~G~feEAI~LlE~aL~LeraH~gmftELaiLyaKy~peklmEhlk~f~ 1340 (1630)
T 1xi4_A 1265 EFRLAQMCGLHIV--VHADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKFKPQKMREHLELFW 1340 (1630)
T ss_pred HHHHHHHHHHhhh--cCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccChhHhHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 9999999876643 45666778899999999999999999999999988888887777777663 44555555554
No 18
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.82 E-value=1.5e-15 Score=163.33 Aligned_cols=370 Identities=12% Similarity=0.111 Sum_probs=188.6
Q ss_pred HHHHHHhcCChHHHHHHHhhcCC-CC-----cchHHHHHHHHHhCCChhHHHHHHhhCCCCCcchHHHHHHHHHcCCChH
Q 007573 56 KISALSRAGKISAARQLFDQMTT-KD-----VITWNAIITGYWQNGFLQESKNLFQSMPVKNIVSWNCMIAGCIDNDRID 129 (597)
Q Consensus 56 l~~~~~~~g~~~~A~~~~~~~~~-~~-----~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~~~~~ 129 (597)
.+++|+..|.+.+|+++++++.. |+ ...-+.++.+..+. +..+......+...-+ ...+...+...|.++
T Consensus 991 ~vKaf~~aglp~EaieLLEKivl~~s~fs~n~~LqnlLi~tAIka-D~~Rv~eyI~kLd~~d---~~eIA~Iai~lglyE 1066 (1630)
T 1xi4_A 991 TVKAFMTADLPNELIELLEKIVLDNSVFSEHRNLQNLLILTAIKA-DRTRVMEYINRLDNYD---APDIANIAISNELFE 1066 (1630)
T ss_pred HHHHHHhCCCHHHHHHHHHHHHcCCCcccccHHHHHHHHHHHHHh-ChhhHHHHHHHhhhcc---HHHHHHHHHhCCCHH
Confidence 45555555555555555555542 11 12233333333333 2333333333332111 333455555566666
Q ss_pred HHHHHHccCCCCChhhHHHHHHHHHcCCChHHHHHHHccCCCCCchhHHHHHHHHHhCCChhHHHHHHHhcccCCcchHH
Q 007573 130 DAFDYFQAMPERNTATYNAMISGFLKHGRLEEATRLFEQMPRRNVISYTAMLDGFMKKGEVDKARALSDYMSFKNVVSWT 209 (597)
Q Consensus 130 ~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~ 209 (597)
+|..+|+... ......+.++. ..|++++|.++.++. .++.+|..+..++.+.|++++|++.|.+. .|...|.
T Consensus 1067 EAf~IYkKa~-~~~~A~~VLie---~i~nldrAiE~Aerv--n~p~vWsqLAKAql~~G~~kEAIdsYiKA--dD~say~ 1138 (1630)
T 1xi4_A 1067 EAFAIFRKFD-VNTSAVQVLIE---HIGNLDRAYEFAERC--NEPAVWSQLAKAQLQKGMVKEAIDSYIKA--DDPSSYM 1138 (1630)
T ss_pred HHHHHHHHcC-CHHHHHHHHHH---HHhhHHHHHHHHHhc--CCHHHHHHHHHHHHhCCCHHHHHHHHHhc--CChHHHH
Confidence 6666666553 11111222222 445566666666554 23455666666666666666666666543 4455555
Q ss_pred HHHHHHHcCCChHHHHHHHhhcCCCCCCchHHHHHHHHHHhcCCHHHHHHHHhhcCCCChhHHHHHHHHHHHcCChhHHH
Q 007573 210 VMITGYVKNERFCEARELFYRMPDYDKNVFVVTAMITGFCKVGMLENARLLFERIQPKDCVSFNAMIAGYAQNGVAEEAL 289 (597)
Q Consensus 210 ~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 289 (597)
.++.++.+.|++++|.+.|..+.+..++..+.+.++.+|++.+++++..... ..++...|..+...|...|++++|.
T Consensus 1139 eVa~~~~~lGkyEEAIeyL~mArk~~~e~~Idt~LafaYAKl~rleele~fI---~~~n~ad~~~iGd~le~eg~YeeA~ 1215 (1630)
T 1xi4_A 1139 EVVQAANTSGNWEELVKYLQMARKKARESYVETELIFALAKTNRLAELEEFI---NGPNNAHIQQVGDRCYDEKMYDAAK 1215 (1630)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhcccccccHHHHHHHHhhcCHHHHHHHH---hCCCHHHHHHHHHHHHhcCCHHHHH
Confidence 5666666666666666666665554444444445666666666665433332 2334445555666666666666666
Q ss_pred HHHHHhHHCCCCCCHHHHHHHHHHHhccchhHHHHHHHHHHHHhCCCCcccHHHHHHHHHHhcCCHHHHHHHHhccCCCC
Q 007573 290 RLFSGMIKMDMQPDDATLVSVFTACSALQLLNEGRQSHVLVIRNGFEANVSVCNAVITMYSRCGGILDSELAFRQIHSPN 369 (597)
Q Consensus 290 ~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 369 (597)
.+|... ..|..+...+.+.|+++.|.+.+... .+..+|..+..++...|++..|...... ...+
T Consensus 1216 ~~Y~kA---------~ny~rLA~tLvkLge~q~AIEaarKA------~n~~aWkev~~acve~~Ef~LA~~cgl~-Iiv~ 1279 (1630)
T 1xi4_A 1216 LLYNNV---------SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLH-IVVH 1279 (1630)
T ss_pred HHHHhh---------hHHHHHHHHHHHhCCHHHHHHHHHHh------CCHHHHHHHHHHHhhhhHHHHHHHHHHh-hhcC
Confidence 666553 24555666666666666666655544 2345555555556666666666655543 2234
Q ss_pred hhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC-hHHHHHHHHHHh--ccCcHHHHHHHHHHhHHhcCCCC------C
Q 007573 370 LVSWNTIIAAFAQHGHYEKALIFFSQMGLNGFDPD-GITFLSLLSACG--HAGKVNESMDLFELMVKVYGIIP------S 440 (597)
Q Consensus 370 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~ll~~~~--~~g~~~~a~~~~~~~~~~~~~~p------~ 440 (597)
+..+..++..|.+.|.+++|+.+++..... .|. ...|+-+...++ +.++..++.+.|..- -+++| +
T Consensus 1280 ~deLeeli~yYe~~G~feEAI~LlE~aL~L--eraH~gmftELaiLyaKy~peklmEhlk~f~~r---ini~k~~r~~e~ 1354 (1630)
T 1xi4_A 1280 ADELEELINYYQDRGYFEELITMLEAALGL--ERAHMGMFTELAILYSKFKPQKMREHLELFWSR---VNIPKVLRAAEQ 1354 (1630)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHhcc--ChhHhHHHHHHHHHHHhCCHHHHHHHHHHHHHh---cccchHhHHHHH
Confidence 444555666666666666666666555432 222 223333333332 233444444444321 13333 3
Q ss_pred hHHHHHHHHHHhhcCCHHHHH
Q 007573 441 SEHYTCLVDILSRAGQLEKAW 461 (597)
Q Consensus 441 ~~~~~~l~~~~~~~g~~~~A~ 461 (597)
...|..++..|.+.|+++.|.
T Consensus 1355 ~~lW~elv~LY~~~~e~dnA~ 1375 (1630)
T 1xi4_A 1355 AHLWAELVFLYDKYEEYDNAI 1375 (1630)
T ss_pred HHHHHHHHHHHHhcccHHHHH
Confidence 445666666666666666665
No 19
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.82 E-value=7.6e-18 Score=163.47 Aligned_cols=264 Identities=11% Similarity=-0.005 Sum_probs=229.1
Q ss_pred CChhHHHHHHHHHHHcCChhHHHHHHHHhHHCCCCCCHHHHHHHHHHHhccchhHHHHHHHHHHHHhCCCCcccHHHHHH
Q 007573 267 KDCVSFNAMIAGYAQNGVAEEALRLFSGMIKMDMQPDDATLVSVFTACSALQLLNEGRQSHVLVIRNGFEANVSVCNAVI 346 (597)
Q Consensus 267 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 346 (597)
.++..+..++..+...|++++|+.+|+++.+.. +.+...+..+...+...|+.++|...+..+.+.. +.+...+..+.
T Consensus 20 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~ 97 (330)
T 3hym_B 20 ENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKD-PFHASCLPVHIGTLVELNKANELFYLSHKLVDLY-PSNPVSWFAVG 97 (330)
T ss_dssp CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSTHHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHH
Confidence 466778888999999999999999999998764 3344455567778889999999999999999875 56788899999
Q ss_pred HHHHhcC-CHHHHHHHHhccC---CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHhccCcHH
Q 007573 347 TMYSRCG-GILDSELAFRQIH---SPNLVSWNTIIAAFAQHGHYEKALIFFSQMGLNGFDPDGITFLSLLSACGHAGKVN 422 (597)
Q Consensus 347 ~~~~~~g-~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~ 422 (597)
..+...| ++++|...|++.. +.+...|..+...+...|++++|++.++++.+.. +.+...+..+...+...|+++
T Consensus 98 ~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~ 176 (330)
T 3hym_B 98 CYYLMVGHKNEHARRYLSKATTLEKTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLM-KGCHLPMLYIGLEYGLTNNSK 176 (330)
T ss_dssp HHHHHSCSCHHHHHHHHHHHHTTCTTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHT-TTCSHHHHHHHHHHHHTTCHH
T ss_pred HHHHHhhhhHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhc-cccHHHHHHHHHHHHHHhhHH
Confidence 9999999 9999999999875 4567789999999999999999999999998764 334667777889999999999
Q ss_pred HHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHhhCC-C----------CCCHHHHHHHHHHHHhcCCHHH
Q 007573 423 ESMDLFELMVKVYGIIPSSEHYTCLVDILSRAGQLEKAWQITQGMP-F----------EADTGVWGSLLAACVINLNVEL 491 (597)
Q Consensus 423 ~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~----------~p~~~~~~~l~~~~~~~g~~~~ 491 (597)
+|.+.++.+.+. .+.+...+..++..|...|++++|...++++. . +....++..++..+...|++++
T Consensus 177 ~A~~~~~~al~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~ 254 (330)
T 3hym_B 177 LAERFFSQALSI--APEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAE 254 (330)
T ss_dssp HHHHHHHHHHTT--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHh--CCCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHH
Confidence 999999999853 23457889999999999999999999998764 1 3346789999999999999999
Q ss_pred HHHHHHHHHhcCCCCCchHHHHHHHHHhcCCcHHHHHHHHHHHh
Q 007573 492 GELAAKKMRELDPQNSAVYVMLSNLYAAAGMWRDVTRVRLLMKE 535 (597)
Q Consensus 492 a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 535 (597)
|+..++++++.+|+++.++..++.+|...|++++|.+.++++.+
T Consensus 255 A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 298 (330)
T 3hym_B 255 ALDYHRQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTALG 298 (330)
T ss_dssp HHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTT
T ss_pred HHHHHHHHHhhCccchHHHHHHHHHHHHhccHHHHHHHHHHHHc
Confidence 99999999999999999999999999999999999999998654
No 20
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.81 E-value=1.9e-18 Score=170.66 Aligned_cols=299 Identities=11% Similarity=-0.002 Sum_probs=199.6
Q ss_pred HHcCCChHHHHH-HHhhcCCCCCC-----chHHHHHHHHHHhcCCHHHHHHHHhhcC---CCChhHHHHHHHHHHHcCCh
Q 007573 215 YVKNERFCEARE-LFYRMPDYDKN-----VFVVTAMITGFCKVGMLENARLLFERIQ---PKDCVSFNAMIAGYAQNGVA 285 (597)
Q Consensus 215 ~~~~g~~~~a~~-~~~~~~~~~~~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~ 285 (597)
+...|++++|.. .++....+.|+ ...+..+...+.+.|++++|...|+++. +.+..+|..+...+...|++
T Consensus 35 ~~~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~ 114 (368)
T 1fch_A 35 HPWLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQE 114 (368)
T ss_dssp -----------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHTTCH
T ss_pred hHHHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCcCH
Confidence 334566777776 77766654442 3345666667777777777777776653 23555666777777777777
Q ss_pred hHHHHHHHHhHHCCCCCCHHHHHHHHHHHhccchhHHHHHHHHHHHHhCCCCcccHHHHHHHHHHhcCCHHHHHHHHhcc
Q 007573 286 EEALRLFSGMIKMDMQPDDATLVSVFTACSALQLLNEGRQSHVLVIRNGFEANVSVCNAVITMYSRCGGILDSELAFRQI 365 (597)
Q Consensus 286 ~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 365 (597)
++|+..|+++.+.. +.+..++..+...+...|+.++|...+..+.+.... +...+..+... .. .
T Consensus 115 ~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~-------~~-------~ 178 (368)
T 1fch_A 115 LLAISALRRCLELK-PDNQTALMALAVSFTNESLQRQACEILRDWLRYTPA-YAHLVTPAEEG-------AG-------G 178 (368)
T ss_dssp HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTT-TGGGCC----------------------
T ss_pred HHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC-cHHHHHHHHHH-------hh-------h
Confidence 77777777666543 224445555555556666666666666665554311 11111100000 00 0
Q ss_pred CCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC-ChHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChHHH
Q 007573 366 HSPNLVSWNTIIAAFAQHGHYEKALIFFSQMGLNGFDP-DGITFLSLLSACGHAGKVNESMDLFELMVKVYGIIPSSEHY 444 (597)
Q Consensus 366 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~ 444 (597)
..+ ...+.. +..+...|++++|+..++++.+..... +..++..+...+...|++++|...++++.+. .+.+...+
T Consensus 179 ~~~-~~~~~~-~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~~~~~~~~ 254 (368)
T 1fch_A 179 AGL-GPSKRI-LGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSV--RPNDYLLW 254 (368)
T ss_dssp --------CT-THHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHH
T ss_pred hcc-cHHHHH-HHHHhhcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CcCCHHHH
Confidence 000 001112 223337899999999999998753221 4788889999999999999999999998864 23357889
Q ss_pred HHHHHHHhhcCCHHHHHHHHhhCC-C-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC-----------CchHH
Q 007573 445 TCLVDILSRAGQLEKAWQITQGMP-F-EADTGVWGSLLAACVINLNVELGELAAKKMRELDPQN-----------SAVYV 511 (597)
Q Consensus 445 ~~l~~~~~~~g~~~~A~~~~~~~~-~-~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~-----------~~~~~ 511 (597)
..++..|.+.|++++|.+.++++. . +.+...+..++..+...|++++|...+++++++.|++ ..++.
T Consensus 255 ~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~ 334 (368)
T 1fch_A 255 NKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWS 334 (368)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccchhhHHHH
Confidence 999999999999999999999875 3 4457789999999999999999999999999998887 78899
Q ss_pred HHHHHHHhcCCcHHHHHHHHHH
Q 007573 512 MLSNLYAAAGMWRDVTRVRLLM 533 (597)
Q Consensus 512 ~l~~~~~~~g~~~~A~~~~~~~ 533 (597)
.++.+|...|++++|..++++.
T Consensus 335 ~l~~~~~~~g~~~~A~~~~~~~ 356 (368)
T 1fch_A 335 TLRLALSMLGQSDAYGAADARD 356 (368)
T ss_dssp HHHHHHHHHTCGGGHHHHHTTC
T ss_pred HHHHHHHHhCChHhHHHhHHHH
Confidence 9999999999999999988744
No 21
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.81 E-value=1.2e-18 Score=168.48 Aligned_cols=286 Identities=12% Similarity=0.098 Sum_probs=126.6
Q ss_pred cCCChHHHHHHHccCCCCCchhHHHHHHHHHhCCChhHHHHHHHhcccCCcchHHHHHHHHHcCCChHHHHHHHhhcCCC
Q 007573 155 KHGRLEEATRLFEQMPRRNVISYTAMLDGFMKKGEVDKARALSDYMSFKNVVSWTVMITGYVKNERFCEARELFYRMPDY 234 (597)
Q Consensus 155 ~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 234 (597)
+.|++++|.+.++++..| .+|..|+.++.+.|++++|++.|.+. +|..+|..++.++...|++++|++.++.+.+.
T Consensus 15 ~~~~ld~A~~fae~~~~~--~vWs~La~A~l~~g~~~eAIdsfika--~D~~~y~~V~~~ae~~g~~EeAi~yl~~ark~ 90 (449)
T 1b89_A 15 HIGNLDRAYEFAERCNEP--AVWSQLAKAQLQKGMVKEAIDSYIKA--DDPSSYMEVVQAANTSGNWEELVKYLQMARKK 90 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HccCHHHHHHHHHhCCCh--HHHHHHHHHHHHcCCHHHHHHHHHcC--CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHh
Confidence 567788888888887444 47888888888888888888888654 56668888888888888888888888777775
Q ss_pred CCCchHHHHHHHHHHhcCCHHHHHHHHhhcCCCChhHHHHHHHHHHHcCChhHHHHHHHHhHHCCCCCCHHHHHHHHHHH
Q 007573 235 DKNVFVVTAMITGFCKVGMLENARLLFERIQPKDCVSFNAMIAGYAQNGVAEEALRLFSGMIKMDMQPDDATLVSVFTAC 314 (597)
Q Consensus 235 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~ 314 (597)
.+++.+.+.++.+|.+.|+++++.++++. ++..+|+.++..|...|++++|...|..+ ..|..+..++
T Consensus 91 ~~~~~i~~~Li~~Y~Klg~l~e~e~f~~~---pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a---------~n~~~LA~~L 158 (449)
T 1b89_A 91 ARESYVETELIFALAKTNRLAELEEFING---PNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTL 158 (449)
T ss_dssp ------------------CHHHHTTTTTC---C----------------CTTTHHHHHHHT---------TCHHHHHHHH
T ss_pred CccchhHHHHHHHHHHhCCHHHHHHHHcC---CcHHHHHHHHHHHHHcCCHHHHHHHHHHh---------hhHHHHHHHH
Confidence 56677788888888888888887777753 56668888888888888888888888866 3577788888
Q ss_pred hccchhHHHHHHHHHHHHhCCCCcccHHHHHHHHHHhcCCHHHHHHHHhccCCCChhhHHHHHHHHHHcCCHHHHHHHHH
Q 007573 315 SALQLLNEGRQSHVLVIRNGFEANVSVCNAVITMYSRCGGILDSELAFRQIHSPNLVSWNTIIAAFAQHGHYEKALIFFS 394 (597)
Q Consensus 315 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 394 (597)
.+.|++++|.+.+..+ .++.+|..++.+|...|+++.|......+. .++.....++..|.+.|++++|+.+++
T Consensus 159 ~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L~-~~ad~l~~lv~~Yek~G~~eEai~lLe 231 (449)
T 1b89_A 159 VHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLHIV-VHADELEELINYYQDRGYFEELITMLE 231 (449)
T ss_dssp HTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTTTT-TCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHHHH-hCHhhHHHHHHHHHHCCCHHHHHHHHH
Confidence 8888888888887776 367788888888888888888877776654 444445568888899999999999998
Q ss_pred HHHHCCCCCChHHHHHHHHHHhc--cCcHHHHHHHHHHhHHhcCCCC------ChHHHHHHHHHHhhcCCHHHHHHHHhh
Q 007573 395 QMGLNGFDPDGITFLSLLSACGH--AGKVNESMDLFELMVKVYGIIP------SSEHYTCLVDILSRAGQLEKAWQITQG 466 (597)
Q Consensus 395 ~m~~~g~~p~~~~~~~ll~~~~~--~g~~~~a~~~~~~~~~~~~~~p------~~~~~~~l~~~~~~~g~~~~A~~~~~~ 466 (597)
...... +-....|+.+.-++++ .+++.+..+.|. +.-+++| +...|..++..|...++++.|...+-+
T Consensus 232 ~aL~le-~ah~~~ftel~il~~ky~p~k~~ehl~~~~---~~ini~k~~~~~~~~~~w~e~~~ly~~~~e~d~A~~tm~~ 307 (449)
T 1b89_A 232 AALGLE-RAHMGMFTELAILYSKFKPQKMREHLELFW---SRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITMMN 307 (449)
T ss_dssp HHTTST-TCCHHHHHHHHHHHHTTCHHHHHHHHHHHS---TTSCHHHHHHHHHTTTCHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHhCCc-HHHHHHHHHHHHHHHhcCHHHHHHHHHHHH---HHhcCcHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHh
Confidence 887443 3334556666555543 445555555544 2225555 466788899999999999988876655
Q ss_pred C
Q 007573 467 M 467 (597)
Q Consensus 467 ~ 467 (597)
-
T Consensus 308 h 308 (449)
T 1b89_A 308 H 308 (449)
T ss_dssp S
T ss_pred C
Confidence 4
No 22
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.81 E-value=3.2e-17 Score=155.37 Aligned_cols=268 Identities=8% Similarity=-0.016 Sum_probs=161.4
Q ss_pred cCCChHHHHHHHhhcCCCCCCc--hHHHHHHHHHHhcCCHHHHHHHHhhcCCCChhHHHHHHHHHHHcCChhHHHHHHHH
Q 007573 217 KNERFCEARELFYRMPDYDKNV--FVVTAMITGFCKVGMLENARLLFERIQPKDCVSFNAMIAGYAQNGVAEEALRLFSG 294 (597)
Q Consensus 217 ~~g~~~~a~~~~~~~~~~~~~~--~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 294 (597)
..|++..|+...+......|+. .....+..+|...|+++.|+..++...+++..++..+...+...++.++|++.+++
T Consensus 11 ~~g~y~~ai~~~~~~~~~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~~~~~~~~a~~~la~~~~~~~~~~~A~~~l~~ 90 (291)
T 3mkr_A 11 YIGSYQQCINEAQRVKPSSPERDVERDVFLYRAYLAQRKYGVVLDEIKPSSAPELQAVRMFAEYLASHSRRDAIVAELDR 90 (291)
T ss_dssp HTTCHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCTTSCHHHHHHHHHHHHHHCSTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcccCCchhhHHHHHHHHHHHHHCCCHHHHHHHhcccCChhHHHHHHHHHHHcCCCcHHHHHHHHHH
Confidence 3455555555554444433332 12233444555555555555444443333334444444444445555555555554
Q ss_pred hHHCCCCCCHHHHHHHHHHHhccchhHHHHHHHHHHHHhCCCCcccHHHHHHHHHHhcCCHHHHHHHHhccCCCChhhHH
Q 007573 295 MIKMDMQPDDATLVSVFTACSALQLLNEGRQSHVLVIRNGFEANVSVCNAVITMYSRCGGILDSELAFRQIHSPNLVSWN 374 (597)
Q Consensus 295 m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 374 (597)
+...+..|+ +...+..+...+...|++++|++.+++ +.+...+.
T Consensus 91 ll~~~~~P~----------------------------------~~~~~~~la~~~~~~g~~~~Al~~l~~--~~~~~~~~ 134 (291)
T 3mkr_A 91 EMSRSVDVT----------------------------------NTTFLLMAASIYFYDQNPDAALRTLHQ--GDSLECMA 134 (291)
T ss_dssp HHHSCCCCS----------------------------------CHHHHHHHHHHHHHTTCHHHHHHHHTT--CCSHHHHH
T ss_pred HHhcccCCC----------------------------------CHHHHHHHHHHHHHCCCHHHHHHHHhC--CCCHHHHH
Confidence 444333333 334455566778888899999988888 56778888
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHCCCCCChHHH---HHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChHHHHHHHHHH
Q 007573 375 TIIAAFAQHGHYEKALIFFSQMGLNGFDPDGITF---LSLLSACGHAGKVNESMDLFELMVKVYGIIPSSEHYTCLVDIL 451 (597)
Q Consensus 375 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~---~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~ 451 (597)
.++..+.+.|++++|.+.|+++.+. .|+.... ...+..+...|++++|..+|+++.+. .+.++..++.+..++
T Consensus 135 ~l~~~~~~~g~~~~A~~~l~~~~~~--~p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~--~p~~~~~~~~la~~~ 210 (291)
T 3mkr_A 135 MTVQILLKLDRLDLARKELKKMQDQ--DEDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADK--CSPTLLLLNGQAACH 210 (291)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHH--SCCCHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHhh--CcCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHh--CCCcHHHHHHHHHHH
Confidence 8888999999999999999998875 3554321 12233444557888888888888764 334566777777777
Q ss_pred hhcCCHHHHHHHHhhCC-CCC-CHHHHHHHHHHHHhcCCHHH-HHHHHHHHHhcCCCCCchHHHHHHHHHhcCCcHHHHH
Q 007573 452 SRAGQLEKAWQITQGMP-FEA-DTGVWGSLLAACVINLNVEL-GELAAKKMRELDPQNSAVYVMLSNLYAAAGMWRDVTR 528 (597)
Q Consensus 452 ~~~g~~~~A~~~~~~~~-~~p-~~~~~~~l~~~~~~~g~~~~-a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 528 (597)
.+.|++++|++.+++.. ..| +..++..++..+...|+.++ +.++++++++++|+++.+. +...+.+.++++..
T Consensus 211 ~~~g~~~eA~~~l~~al~~~p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~~P~~~~~~----d~~~~~~~fd~~~~ 286 (291)
T 3mkr_A 211 MAQGRWEAAEGVLQEALDKDSGHPETLINLVVLSQHLGKPPEVTNRYLSQLKDAHRSHPFIK----EYRAKENDFDRLVL 286 (291)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHH----HHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCCChHHH----HHHHHHHHHHHHHH
Confidence 77777777777776654 333 45567777777767776654 4567777777777765533 23444444444443
No 23
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.80 E-value=1.5e-16 Score=163.31 Aligned_cols=365 Identities=10% Similarity=0.003 Sum_probs=257.1
Q ss_pred CChhhHHHHHHHHHc----CCChHHHHHHHccCCC-CCchhHHHHHHHHHh----CCChhHHHHHHHhcccC-CcchHHH
Q 007573 141 RNTATYNAMISGFLK----HGRLEEATRLFEQMPR-RNVISYTAMLDGFMK----KGEVDKARALSDYMSFK-NVVSWTV 210 (597)
Q Consensus 141 ~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~-~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~-~~~~~~~ 210 (597)
.++..+..|...|.. .+++++|...|++..+ .++..+..|...|.. .+++++|...|++.... +...+..
T Consensus 37 g~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~ 116 (490)
T 2xm6_A 37 GEAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQGYTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKGLPQAQQN 116 (490)
T ss_dssp TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred CCHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHH
Confidence 345555555555555 5666666666655432 345556666666666 66666666666666433 4455555
Q ss_pred HHHHHHc----CCChHHHHHHHhhcCCCCCCchHHHHHHHHHHh----cCCHHHHHHHHhhcCC-CChhHHHHHHHHHHH
Q 007573 211 MITGYVK----NERFCEARELFYRMPDYDKNVFVVTAMITGFCK----VGMLENARLLFERIQP-KDCVSFNAMIAGYAQ 281 (597)
Q Consensus 211 ll~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~-~~~~~~~~li~~~~~ 281 (597)
+...|.. .+++++|...|+.+.+. .+...+..|...|.. .++.++|.+.|++..+ .++.++..+...|..
T Consensus 117 Lg~~y~~g~g~~~~~~~A~~~~~~a~~~-~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~ 195 (490)
T 2xm6_A 117 LGVMYHEGNGVKVDKAESVKWFRLAAEQ-GRDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQGNVWSCNQLGYMYSR 195 (490)
T ss_dssp HHHHHHHTSSSCCCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHcCCCCCCCHHHHHHHHHHHHHC-CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhc
Confidence 6666665 56677777777666552 234556666666665 6677777777766543 456677777777776
Q ss_pred ----cCChhHHHHHHHHhHHCCCCCCHHHHHHHHHHHhc----cchhHHHHHHHHHHHHhCCCCcccHHHHHHHHHHh--
Q 007573 282 ----NGVAEEALRLFSGMIKMDMQPDDATLVSVFTACSA----LQLLNEGRQSHVLVIRNGFEANVSVCNAVITMYSR-- 351 (597)
Q Consensus 282 ----~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-- 351 (597)
.+++++|+..|++..+.| +...+..+...+.. .++.++|...+....+.+ +...+..+..+|..
T Consensus 196 g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~ 269 (490)
T 2xm6_A 196 GLGVERNDAISAQWYRKSATSG---DELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQG---NSIAQFRLGYILEQGL 269 (490)
T ss_dssp TSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHTT
T ss_pred CCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHCCC
Confidence 677788888887777654 33444445444443 667777877777777654 34556667777777
Q ss_pred --cCCHHHHHHHHhccC-CCChhhHHHHHHHHHHc-----CCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHhccC---c
Q 007573 352 --CGGILDSELAFRQIH-SPNLVSWNTIIAAFAQH-----GHYEKALIFFSQMGLNGFDPDGITFLSLLSACGHAG---K 420 (597)
Q Consensus 352 --~g~~~~A~~~~~~~~-~~~~~~~~~li~~~~~~-----g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g---~ 420 (597)
.++.++|...|++.. ..+...+..+...|... +++++|+.+|++..+.| +...+..+...+...| +
T Consensus 270 ~~~~d~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~~g~~~~ 346 (490)
T 2xm6_A 270 AGAKEPLKALEWYRKSAEQGNSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQG---DATAQANLGAIYFRLGSEEE 346 (490)
T ss_dssp TSSCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHSCCHHH
T ss_pred CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHhCCCccc
Confidence 788999999888776 34566777888888877 89999999999998865 3456666777776656 7
Q ss_pred HHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhh----cCCHHHHHHHHhhCCCCCCHHHHHHHHHHHHh----cCCHHHH
Q 007573 421 VNESMDLFELMVKVYGIIPSSEHYTCLVDILSR----AGQLEKAWQITQGMPFEADTGVWGSLLAACVI----NLNVELG 492 (597)
Q Consensus 421 ~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~a 492 (597)
.++|.+.|++..+. .++..+..|..+|.. .+++++|.+.+++.....+...+..|...|.. .++.++|
T Consensus 347 ~~~A~~~~~~a~~~----~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A 422 (490)
T 2xm6_A 347 HKKAVEWFRKAAAK----GEKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQGLSAAQVQLGEIYYYGLGVERDYVQA 422 (490)
T ss_dssp HHHHHHHHHHHHHT----TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHH
T ss_pred HHHHHHHHHHHHHC----CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHcCCCCCCCHHHH
Confidence 89999999998764 367788889999988 89999999999887644567888889999887 8999999
Q ss_pred HHHHHHHHhcCCC---CCchHHHHHHHHHh
Q 007573 493 ELAAKKMRELDPQ---NSAVYVMLSNLYAA 519 (597)
Q Consensus 493 ~~~~~~~~~~~p~---~~~~~~~l~~~~~~ 519 (597)
...|+++.+.+|+ ++.....++.++..
T Consensus 423 ~~~~~~A~~~~~~~~~~~~a~~~l~~~~~~ 452 (490)
T 2xm6_A 423 WAWFDTASTNDMNLFGTENRNITEKKLTAK 452 (490)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHTTSCHH
T ss_pred HHHHHHHHHCCCCCcCCHHHHHHHHhcCHh
Confidence 9999999999854 66666777666554
No 24
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.80 E-value=2.4e-16 Score=163.64 Aligned_cols=401 Identities=9% Similarity=0.062 Sum_probs=268.3
Q ss_pred CcchHHHHHHHHHcCCChHHHHHHHccCC---CCChhhHHHHHHHHHcCCChHHHHHHHccCCC--CCchhHHHHHHHH-
Q 007573 111 NIVSWNCMIAGCIDNDRIDDAFDYFQAMP---ERNTATYNAMISGFLKHGRLEEATRLFEQMPR--RNVISYTAMLDGF- 184 (597)
Q Consensus 111 ~~~~~~~ll~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~li~~~- 184 (597)
|...|..++.. .+.|++++|..+++++. +.+...|..++..+.+.|++++|..+|++... |++..|...+...
T Consensus 12 ~~~~w~~l~~~-~~~~~~~~a~~~~e~al~~~P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~~p~~~lw~~~~~~~~ 90 (530)
T 2ooe_A 12 DLDAWSILIRE-AQNQPIDKARKTYERLVAQFPSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKVLHIDLWKCYLSYVR 90 (530)
T ss_dssp CHHHHHHHHHH-HHSSCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTCCCHHHHHHHHHHHH
T ss_pred CHHHHHHHHHH-HHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCChHHHHHHHHHHH
Confidence 66677777774 67788888888888876 44566788888888888888888888887764 5666666666433
Q ss_pred HhCCChhHHHH----HHHhcc------cCCcchHHHHHHHHHc---------CCChHHHHHHHhhcCCCCCCc---hHHH
Q 007573 185 MKKGEVDKARA----LSDYMS------FKNVVSWTVMITGYVK---------NERFCEARELFYRMPDYDKNV---FVVT 242 (597)
Q Consensus 185 ~~~g~~~~A~~----~~~~m~------~~~~~~~~~ll~~~~~---------~g~~~~a~~~~~~~~~~~~~~---~~~~ 242 (597)
...|+.+.|.+ +|++.. .++...|...+..... .|+++.|..+|+++.+. |.. ..|.
T Consensus 91 ~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~~-P~~~~~~~~~ 169 (530)
T 2ooe_A 91 ETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCVN-PMINIEQLWR 169 (530)
T ss_dssp HHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTTS-CCTTHHHHHH
T ss_pred HHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHhc-hhhhHHHHHH
Confidence 34577766655 555441 1234555555554443 56677777777777663 322 1222
Q ss_pred HHHHHHHhcCCHHHHHHHHhhcCCCChhHHHHHHHHHHHcCChhHHHHHHHHh------HHCC---CCCCH--------H
Q 007573 243 AMITGFCKVGMLENARLLFERIQPKDCVSFNAMIAGYAQNGVAEEALRLFSGM------IKMD---MQPDD--------A 305 (597)
Q Consensus 243 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m------~~~g---~~p~~--------~ 305 (597)
.........|. ..+..++. ...+++..|..++..+ .+.. +.|+. .
T Consensus 170 ~~~~~e~~~~~-~~~~~~l~-----------------~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~ 231 (530)
T 2ooe_A 170 DYNKYEEGINI-HLAKKMIE-----------------DRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQQVD 231 (530)
T ss_dssp HHHHHHHHHCH-HHHHHHHH-----------------TTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCHHHHHH
T ss_pred HHHHHHHhhch-hHHHHHHH-----------------HhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHHHHH
Confidence 21111100110 00111110 1233455666555542 1111 23331 2
Q ss_pred HHHHHHHHHhc----cchh----HHHHHHHHHHHHhCCCCcccHHHHHHHHHHh-------cCCHH-------HHHHHHh
Q 007573 306 TLVSVFTACSA----LQLL----NEGRQSHVLVIRNGFEANVSVCNAVITMYSR-------CGGIL-------DSELAFR 363 (597)
Q Consensus 306 ~~~~ll~~~~~----~~~~----~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-------~g~~~-------~A~~~~~ 363 (597)
.|...+..... .++. +.+..+++.++... +.+..+|..++..+.+ .|+++ +|..+++
T Consensus 232 ~w~~~~~~e~~~~~~~~~~~~~~~~a~~~y~~al~~~-p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~ 310 (530)
T 2ooe_A 232 MWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYE 310 (530)
T ss_dssp HHHHHHHHHHHCSSCCSCSHHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCccCCcchhHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHH
Confidence 33333322111 1222 35667788777764 5567788888888775 68877 8999998
Q ss_pred ccC----CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCh--HHHHHHHHHHhccCcHHHHHHHHHHhHHhcCC
Q 007573 364 QIH----SPNLVSWNTIIAAFAQHGHYEKALIFFSQMGLNGFDPDG--ITFLSLLSACGHAGKVNESMDLFELMVKVYGI 437 (597)
Q Consensus 364 ~~~----~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~--~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~ 437 (597)
+.. +.+...|..++..+.+.|++++|..+|+++.+. .|+. ..|..++..+.+.|++++|.++|+...+.
T Consensus 311 ~Al~~~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~--- 385 (530)
T 2ooe_A 311 RAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKARED--- 385 (530)
T ss_dssp HHTTTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHS--SSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC---
T ss_pred HHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCc--cccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhc---
Confidence 775 335778999999999999999999999999985 5543 47888888888899999999999998753
Q ss_pred CCC-hHHHHHHHHH-HhhcCCHHHHHHHHhhCC-CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCc----h
Q 007573 438 IPS-SEHYTCLVDI-LSRAGQLEKAWQITQGMP-FEA-DTGVWGSLLAACVINLNVELGELAAKKMRELDPQNSA----V 509 (597)
Q Consensus 438 ~p~-~~~~~~l~~~-~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~----~ 509 (597)
.|. ...|...+.. +...|+.++|.++|++.. ..| +...|..++..+...|+.++|..+|+++++..|.++. .
T Consensus 386 ~~~~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~~p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~l 465 (530)
T 2ooe_A 386 ARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEI 465 (530)
T ss_dssp TTCCTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGGCHHH
T ss_pred cCCchHHHHHHHHHHHHHcCChhHHHHHHHHHHHHCCCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHHHHHH
Confidence 333 3444333333 346899999999998765 334 5789999999999999999999999999998876654 6
Q ss_pred HHHHHHHHHhcCCcHHHHHHHHHHHhCC
Q 007573 510 YVMLSNLYAAAGMWRDVTRVRLLMKEQG 537 (597)
Q Consensus 510 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 537 (597)
+...+......|+.+.+.++.+++.+.-
T Consensus 466 w~~~~~~e~~~G~~~~~~~~~~r~~~~~ 493 (530)
T 2ooe_A 466 WARFLAFESNIGDLASILKVEKRRFTAF 493 (530)
T ss_dssp HHHHHHHHHHSSCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 7777888889999999999999987644
No 25
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.78 E-value=6e-17 Score=165.79 Aligned_cols=380 Identities=11% Similarity=-0.039 Sum_probs=180.9
Q ss_pred hhhHHHHHHHHHcCCChHHHHHHHccCCC------------CCchhHHHHHHHHHhCCChhHHHHHHHhccc--------
Q 007573 143 TATYNAMISGFLKHGRLEEATRLFEQMPR------------RNVISYTAMLDGFMKKGEVDKARALSDYMSF-------- 202 (597)
Q Consensus 143 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~------------~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-------- 202 (597)
...|+.|..++...|++++|++.|++..+ ....+|+.+..+|...|++++|...+++...
T Consensus 51 a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~~ 130 (472)
T 4g1t_A 51 ATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSP 130 (472)
T ss_dssp CHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCS
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcccc
Confidence 34566666666666776666666654321 1233555666666666666666655554410
Q ss_pred --C-CcchHHHHHHHHHc--CCChHHHHHHHhhcCCCCCCch-HHHHHHHH---HHhcCCHHHHHHHHhhc---CCCChh
Q 007573 203 --K-NVVSWTVMITGYVK--NERFCEARELFYRMPDYDKNVF-VVTAMITG---FCKVGMLENARLLFERI---QPKDCV 270 (597)
Q Consensus 203 --~-~~~~~~~ll~~~~~--~g~~~~a~~~~~~~~~~~~~~~-~~~~l~~~---~~~~g~~~~A~~~~~~~---~~~~~~ 270 (597)
+ ...++.....++.. .+++++|+..|+++.++.|+.. .+..+..+ +...++.++|+..+++. .+.+..
T Consensus 131 ~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~p~~~~ 210 (472)
T 4g1t_A 131 YRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNPDNQY 210 (472)
T ss_dssp SCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHCSSCHH
T ss_pred cchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcCCcchH
Confidence 0 11233333333322 2345555555555554444322 22222222 22233444444444332 122333
Q ss_pred HHHHHHHHHHH----cCChhHHHHHHHHhHHCCCCCCHHHHHHHHHHHhccchhHHHHHHHHHHHHhCCCCcccHHHHHH
Q 007573 271 SFNAMIAGYAQ----NGVAEEALRLFSGMIKMDMQPDDATLVSVFTACSALQLLNEGRQSHVLVIRNGFEANVSVCNAVI 346 (597)
Q Consensus 271 ~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 346 (597)
++..+...+.. .|++++|...+++..... +.+...+..+...+...|+.+.|...+..+.+.. +.+..++..+.
T Consensus 211 ~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg 288 (472)
T 4g1t_A 211 LKVLLALKLHKMREEGEEEGEGEKLVEEALEKA-PGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYI-PNNAYLHCQIG 288 (472)
T ss_dssp HHHHHHHHHHHCC------CHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhC-ccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhC-CChHHHHHHHH
Confidence 33333333322 233444444444444321 1223333344444444444444444444444432 22233333333
Q ss_pred HHHHhcCCHHHHHHHHhccCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHhccCcHHHHHH
Q 007573 347 TMYSRCGGILDSELAFRQIHSPNLVSWNTIIAAFAQHGHYEKALIFFSQMGLNGFDPDGITFLSLLSACGHAGKVNESMD 426 (597)
Q Consensus 347 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~ 426 (597)
..|...+....+. .. ..........+.+++|...+++..+.. +.+..++..+...+...|++++|.+
T Consensus 289 ~~y~~~~~~~~~~-----~~-------~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~lg~~~~~~~~~~~A~~ 355 (472)
T 4g1t_A 289 CCYRAKVFQVMNL-----RE-------NGMYGKRKLLELIGHAVAHLKKADEAN-DNLFRVCSILASLHALADQYEEAEY 355 (472)
T ss_dssp HHHHHHHHHHHHC------------------CHHHHHHHHHHHHHHHHHHHHHC-TTTCCCHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHhhhH-----HH-------HHHHHHHHHHhhHHHHHHHHHHHhhcC-CchhhhhhhHHHHHHHhccHHHHHH
Confidence 3332111000000 00 000000011234577888888877643 3345567778888999999999999
Q ss_pred HHHHhHHhcCCCCCh--HHHHHHHHH-HhhcCCHHHHHHHHhhCC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 007573 427 LFELMVKVYGIIPSS--EHYTCLVDI-LSRAGQLEKAWQITQGMP-FEADTGVWGSLLAACVINLNVELGELAAKKMREL 502 (597)
Q Consensus 427 ~~~~~~~~~~~~p~~--~~~~~l~~~-~~~~g~~~~A~~~~~~~~-~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 502 (597)
.|++..+. ...|.. ..+..+... +...|+.++|+..+++.. +.|+...... ....+..++++.++.
T Consensus 356 ~~~kaL~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i~~~~~~~~~---------~~~~l~~~~~~~l~~ 425 (472)
T 4g1t_A 356 YFQKEFSK-ELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKINQKSREKEK---------MKDKLQKIAKMRLSK 425 (472)
T ss_dssp HHHHHHHS-CCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHSCCCCHHHHH---------HHHHHHHHHHHHHHH
T ss_pred HHHHHHhc-CCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcccHHHHH---------HHHHHHHHHHHHHHh
Confidence 99988764 222221 123333332 346789999999988765 6666543322 234566778888999
Q ss_pred CCCCCchHHHHHHHHHhcCCcHHHHHHHHHHHhCCCccCCCeeEE
Q 007573 503 DPQNSAVYVMLSNLYAAAGMWRDVTRVRLLMKEQGVTKQCAYSWI 547 (597)
Q Consensus 503 ~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~s~~ 547 (597)
+|+++.++..++.+|...|++++|++.|++..+.+.......+|+
T Consensus 426 ~p~~~~~~~~LG~~~~~~g~~~~A~~~y~kALe~~~~~p~a~~~~ 470 (472)
T 4g1t_A 426 NGADSEALHVLAFLQELNEKMQQADEDSERGLESGSLIPSASSWN 470 (472)
T ss_dssp CC-CTTHHHHHHHHHHHHHHCC-----------------------
T ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcHhhcC
Confidence 999999999999999999999999999999998775544455554
No 26
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.78 E-value=1.2e-15 Score=156.74 Aligned_cols=352 Identities=11% Similarity=-0.008 Sum_probs=296.2
Q ss_pred CCCchhHHHHHHHHHh----CCChhHHHHHHHhcccC-CcchHHHHHHHHHc----CCChHHHHHHHhhcCCCCCCchHH
Q 007573 171 RRNVISYTAMLDGFMK----KGEVDKARALSDYMSFK-NVVSWTVMITGYVK----NERFCEARELFYRMPDYDKNVFVV 241 (597)
Q Consensus 171 ~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~-~~~~~~~ll~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~ 241 (597)
..++.++..+...|.. .+++++|+..|++.... +...+..+...|.. .+++++|.+.|+.+.+. .+...+
T Consensus 36 ~g~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~-~~~~a~ 114 (490)
T 2xm6_A 36 SGEAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQGYTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALK-GLPQAQ 114 (490)
T ss_dssp TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT-TCHHHH
T ss_pred CCCHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC-CCHHHH
Confidence 4577888888888888 89999999999988544 66788889999988 99999999999998763 356677
Q ss_pred HHHHHHHHh----cCCHHHHHHHHhhcCC-CChhHHHHHHHHHHH----cCChhHHHHHHHHhHHCCCCCCHHHHHHHHH
Q 007573 242 TAMITGFCK----VGMLENARLLFERIQP-KDCVSFNAMIAGYAQ----NGVAEEALRLFSGMIKMDMQPDDATLVSVFT 312 (597)
Q Consensus 242 ~~l~~~~~~----~g~~~~A~~~~~~~~~-~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~ 312 (597)
..|...|.. .+++++|...|++..+ .++.++..+...|.. .+++++|+..|++..+.| +...+..+..
T Consensus 115 ~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~ 191 (490)
T 2xm6_A 115 QNLGVMYHEGNGVKVDKAESVKWFRLAAEQGRDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQG---NVWSCNQLGY 191 (490)
T ss_dssp HHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHH
T ss_pred HHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHH
Confidence 888888988 8899999999998654 467788899999988 789999999999998865 5566666666
Q ss_pred HHhc----cchhHHHHHHHHHHHHhCCCCcccHHHHHHHHHHh----cCCHHHHHHHHhccC-CCChhhHHHHHHHHHH-
Q 007573 313 ACSA----LQLLNEGRQSHVLVIRNGFEANVSVCNAVITMYSR----CGGILDSELAFRQIH-SPNLVSWNTIIAAFAQ- 382 (597)
Q Consensus 313 ~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~-~~~~~~~~~li~~~~~- 382 (597)
.+.. .++.++|...+....+.+ +...+..+..+|.. .++.++|...|++.. ..+...+..+...|..
T Consensus 192 ~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~y~~g 268 (490)
T 2xm6_A 192 MYSRGLGVERNDAISAQWYRKSATSG---DELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQGNSIAQFRLGYILEQG 268 (490)
T ss_dssp HHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHT
T ss_pred HHhcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHCC
Confidence 6665 789999999999998876 45677888888886 789999999999876 4566778888888887
Q ss_pred ---cCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHhcc-----CcHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhc
Q 007573 383 ---HGHYEKALIFFSQMGLNGFDPDGITFLSLLSACGHA-----GKVNESMDLFELMVKVYGIIPSSEHYTCLVDILSRA 454 (597)
Q Consensus 383 ---~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~-----g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~ 454 (597)
.+++++|+++|++..+.| +...+..+...+... +++++|...|++..+. + +...+..+...|...
T Consensus 269 ~~~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~-~---~~~a~~~lg~~y~~~ 341 (490)
T 2xm6_A 269 LAGAKEPLKALEWYRKSAEQG---NSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQ-G---DATAQANLGAIYFRL 341 (490)
T ss_dssp TTSSCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHT-T---CHHHHHHHHHHHHHS
T ss_pred CCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhc-C---CHHHHHHHHHHHHhC
Confidence 899999999999998765 455666777777766 8999999999998874 3 456778888888876
Q ss_pred C---CHHHHHHHHhhCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHh----cCCc
Q 007573 455 G---QLEKAWQITQGMPFEADTGVWGSLLAACVI----NLNVELGELAAKKMRELDPQNSAVYVMLSNLYAA----AGMW 523 (597)
Q Consensus 455 g---~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~----~g~~ 523 (597)
| +.++|.+.+++.....+...+..|...|.. .+++++|+..++++.+.+ ++.++..|+.+|.. .+++
T Consensus 342 g~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~--~~~a~~~Lg~~y~~g~g~~~d~ 419 (490)
T 2xm6_A 342 GSEEEHKKAVEWFRKAAAKGEKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQG--LSAAQVQLGEIYYYGLGVERDY 419 (490)
T ss_dssp CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHTSSSCCCH
T ss_pred CCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCC--CHHHHHHHHHHHHcCCCCCCCH
Confidence 6 789999999887644678899999999988 899999999999999865 57889999999999 8999
Q ss_pred HHHHHHHHHHHhCCC
Q 007573 524 RDVTRVRLLMKEQGV 538 (597)
Q Consensus 524 ~~A~~~~~~~~~~~~ 538 (597)
++|.+.|++..+.+.
T Consensus 420 ~~A~~~~~~A~~~~~ 434 (490)
T 2xm6_A 420 VQAWAWFDTASTNDM 434 (490)
T ss_dssp HHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHCCC
Confidence 999999999998774
No 27
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.78 E-value=2.8e-17 Score=162.20 Aligned_cols=281 Identities=12% Similarity=0.031 Sum_probs=162.9
Q ss_pred HhCCChhHHHH-HHHhccc--C-----CcchHHHHHHHHHcCCChHHHHHHHhhcCCCCC-CchHHHHHHHHHHhcCCHH
Q 007573 185 MKKGEVDKARA-LSDYMSF--K-----NVVSWTVMITGYVKNERFCEARELFYRMPDYDK-NVFVVTAMITGFCKVGMLE 255 (597)
Q Consensus 185 ~~~g~~~~A~~-~~~~m~~--~-----~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~ 255 (597)
...|++++|+. .+++... | +...+..+...+...|++++|...++.+.+..| +..++..+...+.+.|+++
T Consensus 36 ~~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~ 115 (368)
T 1fch_A 36 PWLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQEL 115 (368)
T ss_dssp ----------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCcCHH
Confidence 34467777777 7765521 1 345677788888888888888888888877655 4557778888888888888
Q ss_pred HHHHHHhhcC---CCChhHHHHHHHHHHHcCChhHHHHHHHHhHHCCCCCCHHH-HHH---------------HHHHHhc
Q 007573 256 NARLLFERIQ---PKDCVSFNAMIAGYAQNGVAEEALRLFSGMIKMDMQPDDAT-LVS---------------VFTACSA 316 (597)
Q Consensus 256 ~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~-~~~---------------ll~~~~~ 316 (597)
+|...|+++. +.+..++..+...|...|++++|+..++++.+.. |+... +.. .+..+..
T Consensus 116 ~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 193 (368)
T 1fch_A 116 LAISALRRCLELKPDNQTALMALAVSFTNESLQRQACEILRDWLRYT--PAYAHLVTPAEEGAGGAGLGPSKRILGSLLS 193 (368)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS--TTTGGGCC---------------CTTHHHHH
T ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--cCcHHHHHHHHHHhhhhcccHHHHHHHHHhh
Confidence 8888888653 4567788889999999999999999999888754 32221 110 1122224
Q ss_pred cchhHHHHHHHHHHHHhCCCCcccHHHHHHHHHHhcCCHHHHHHHHhccCCCChhhHHHHHHHHHHcCCHHHHHHHHHHH
Q 007573 317 LQLLNEGRQSHVLVIRNGFEANVSVCNAVITMYSRCGGILDSELAFRQIHSPNLVSWNTIIAAFAQHGHYEKALIFFSQM 396 (597)
Q Consensus 317 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 396 (597)
.|++++|...+..+.+..... ++..++..+...+...|++++|+..++++
T Consensus 194 ~~~~~~A~~~~~~a~~~~p~~------------------------------~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 243 (368)
T 1fch_A 194 DSLFLEVKELFLAAVRLDPTS------------------------------IDPDVQCGLGVLFNLSGEYDKAVDCFTAA 243 (368)
T ss_dssp HHHHHHHHHHHHHHHHHSTTS------------------------------CCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHhCcCc------------------------------ccHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 445555555555444433111 02445555555555555555555555555
Q ss_pred HHCCCCCChHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHhhCC-CCC----
Q 007573 397 GLNGFDPDGITFLSLLSACGHAGKVNESMDLFELMVKVYGIIPSSEHYTCLVDILSRAGQLEKAWQITQGMP-FEA---- 471 (597)
Q Consensus 397 ~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p---- 471 (597)
.+.. +.+..++..+...+...|++++|...++++.+. .+.+...+..++.+|.+.|++++|...++++. ..|
T Consensus 244 l~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~ 320 (368)
T 1fch_A 244 LSVR-PNDYLLWNKLGATLANGNQSEEAVAAYRRALEL--QPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRG 320 (368)
T ss_dssp HHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC--
T ss_pred HHhC-cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCC
Confidence 5431 223445555555555566666666666555542 12234555555666666666666666555443 111
Q ss_pred --------CHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 007573 472 --------DTGVWGSLLAACVINLNVELGELAAKKMR 500 (597)
Q Consensus 472 --------~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 500 (597)
...+|..+..++...|+.++|..++++.+
T Consensus 321 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l 357 (368)
T 1fch_A 321 PRGEGGAMSENIWSTLRLALSMLGQSDAYGAADARDL 357 (368)
T ss_dssp ----CCCCCHHHHHHHHHHHHHHTCGGGHHHHHTTCH
T ss_pred ccccccchhhHHHHHHHHHHHHhCChHhHHHhHHHHH
Confidence 14566666666666666666666665444
No 28
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.77 E-value=1.1e-15 Score=158.53 Aligned_cols=401 Identities=10% Similarity=0.068 Sum_probs=276.9
Q ss_pred CcchHHHHHHHHHhCCChhHHHHHHhhCCCC---CcchHHHHHHHHHcCCChHHHHHHHccCC--CCChhhHHHHHHH-H
Q 007573 80 DVITWNAIITGYWQNGFLQESKNLFQSMPVK---NIVSWNCMIAGCIDNDRIDDAFDYFQAMP--ERNTATYNAMISG-F 153 (597)
Q Consensus 80 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~ll~~~~~~~~~~~A~~~~~~~~--~~~~~~~~~l~~~-~ 153 (597)
|..+|..++. +.+.|++++|..+|+++.+. +...|..++..+.+.|++++|..+|+++. .|++..|..++.. .
T Consensus 12 ~~~~w~~l~~-~~~~~~~~~a~~~~e~al~~~P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~~p~~~lw~~~~~~~~ 90 (530)
T 2ooe_A 12 DLDAWSILIR-EAQNQPIDKARKTYERLVAQFPSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKVLHIDLWKCYLSYVR 90 (530)
T ss_dssp CHHHHHHHHH-HHHSSCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTCCCHHHHHHHHHHHH
T ss_pred CHHHHHHHHH-HHHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCChHHHHHHHHHHH
Confidence 5668999998 47899999999999999754 66789999999999999999999999998 4677777777753 3
Q ss_pred HcCCChHHHHH----HHccCC-----C-CCchhHHHHHHHHHh---------CCChhHHHHHHHhccc-CCc---chHHH
Q 007573 154 LKHGRLEEATR----LFEQMP-----R-RNVISYTAMLDGFMK---------KGEVDKARALSDYMSF-KNV---VSWTV 210 (597)
Q Consensus 154 ~~~g~~~~A~~----~~~~~~-----~-~~~~~~~~li~~~~~---------~g~~~~A~~~~~~m~~-~~~---~~~~~ 210 (597)
...|+.+.|.+ +|+... . ++...|...+....+ .|+++.|..+|++... |.. ..|..
T Consensus 91 ~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~~P~~~~~~~~~~ 170 (530)
T 2ooe_A 91 ETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCVNPMINIEQLWRD 170 (530)
T ss_dssp HHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTTSCCTTHHHHHHH
T ss_pred HHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHhchhhhHHHHHHH
Confidence 45677777665 666542 1 355678888877655 6889999999999864 322 22222
Q ss_pred HHHHHHcCCChHHHHHHHhhcCCCCCCchHHHHHHHHHHhcCCHHHHHHHHhh-------cC------CCC--------h
Q 007573 211 MITGYVKNERFCEARELFYRMPDYDKNVFVVTAMITGFCKVGMLENARLLFER-------IQ------PKD--------C 269 (597)
Q Consensus 211 ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~-------~~------~~~--------~ 269 (597)
........|. ..+..++.. +.++++.|..++.. +. +++ .
T Consensus 171 ~~~~e~~~~~-~~~~~~l~~-------------------~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~ 230 (530)
T 2ooe_A 171 YNKYEEGINI-HLAKKMIED-------------------RSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQQV 230 (530)
T ss_dssp HHHHHHHHCH-HHHHHHHHT-------------------THHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCHHHHH
T ss_pred HHHHHHhhch-hHHHHHHHH-------------------hhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHHHH
Confidence 2221101110 111111110 12233444433332 11 111 2
Q ss_pred hHHHHHHHHHHHc----CCh----hHHHHHHHHhHHCCCCCCHHHHHHHHHHHhc-------cchhH-------HHHHHH
Q 007573 270 VSFNAMIAGYAQN----GVA----EEALRLFSGMIKMDMQPDDATLVSVFTACSA-------LQLLN-------EGRQSH 327 (597)
Q Consensus 270 ~~~~~li~~~~~~----g~~----~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~-------~~~~~-------~a~~~~ 327 (597)
..|...+...... ++. .+++.+|++..... +-+...|......+.. .|+.+ .|..++
T Consensus 231 ~~w~~~~~~e~~~~~~~~~~~~~~~~a~~~y~~al~~~-p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~ 309 (530)
T 2ooe_A 231 DMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIY 309 (530)
T ss_dssp HHHHHHHHHHHHCSSCCSCSHHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCccCCcchhHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHH
Confidence 3455554333222 222 36777888877642 2345555555555543 57766 788888
Q ss_pred HHHHHhCCCCcccHHHHHHHHHHhcCCHHHHHHHHhccC--CC-Ch-hhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC
Q 007573 328 VLVIRNGFEANVSVCNAVITMYSRCGGILDSELAFRQIH--SP-NL-VSWNTIIAAFAQHGHYEKALIFFSQMGLNGFDP 403 (597)
Q Consensus 328 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~-~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 403 (597)
+..++.-.+.+...+..++..+.+.|++++|..+|+++. .| +. ..|...+..+.+.|+.++|.++|++..+.. +.
T Consensus 310 ~~Al~~~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~-~~ 388 (530)
T 2ooe_A 310 ERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA-RT 388 (530)
T ss_dssp HHHTTTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCT-TC
T ss_pred HHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCccccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhcc-CC
Confidence 888763335567788889999999999999999998876 34 33 478888888889999999999999998753 22
Q ss_pred ChHHHHHHHHH-HhccCcHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHhhCC-C---CCC--HHHH
Q 007573 404 DGITFLSLLSA-CGHAGKVNESMDLFELMVKVYGIIPSSEHYTCLVDILSRAGQLEKAWQITQGMP-F---EAD--TGVW 476 (597)
Q Consensus 404 ~~~~~~~ll~~-~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~---~p~--~~~~ 476 (597)
+...+...... +...|+.++|..+|+...+.. +.++..|..++..+.+.|+.++|..+|++.. . .|+ ...|
T Consensus 389 ~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~~--p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~lw 466 (530)
T 2ooe_A 389 RHHVYVTAALMEYYCSKDKSVAFKIFELGLKKY--GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIW 466 (530)
T ss_dssp CTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHH--TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGGCHHHH
T ss_pred chHHHHHHHHHHHHHcCChhHHHHHHHHHHHHC--CCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHHHHHHH
Confidence 33334333222 335899999999999998753 3357889999999999999999999998865 2 232 4488
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 007573 477 GSLLAACVINLNVELGELAAKKMRELDPQ 505 (597)
Q Consensus 477 ~~l~~~~~~~g~~~~a~~~~~~~~~~~p~ 505 (597)
...+......|+.+.+..+..++.+..|+
T Consensus 467 ~~~~~~e~~~G~~~~~~~~~~r~~~~~p~ 495 (530)
T 2ooe_A 467 ARFLAFESNIGDLASILKVEKRRFTAFRE 495 (530)
T ss_dssp HHHHHHHHHSSCHHHHHHHHHHHHHHTHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHCch
Confidence 88899889999999999999999998885
No 29
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.76 E-value=2.2e-17 Score=162.82 Aligned_cols=270 Identities=11% Similarity=-0.004 Sum_probs=182.2
Q ss_pred chHHHHHHHHHHhcCCHHHHHHHHhhcC---CCChhHHHHHHHHHHHcCChhHHHHHHHHhHHCCCCCCHHHHHHHHHHH
Q 007573 238 VFVVTAMITGFCKVGMLENARLLFERIQ---PKDCVSFNAMIAGYAQNGVAEEALRLFSGMIKMDMQPDDATLVSVFTAC 314 (597)
Q Consensus 238 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~ 314 (597)
...+..+...+.+.|++++|...|+++. +.+..+|..+...|...|++++|+..|+++.+.. +.+...+..+...+
T Consensus 65 ~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~ 143 (365)
T 4eqf_A 65 WPGAFEEGLKRLKEGDLPVTILFMEAAILQDPGDAEAWQFLGITQAENENEQAAIVALQRCLELQ-PNNLKALMALAVSY 143 (365)
T ss_dssp CTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHH
Confidence 3446666666666677777766666643 2355566666666666666666666666666542 12334444444444
Q ss_pred hccchhHHHHHHHHHHHHhCCCCcccHHHHHHHHHHhcCCHHHHHHHHhccCCCChhhHHHHHHHHHHcCCHHHHHHHHH
Q 007573 315 SALQLLNEGRQSHVLVIRNGFEANVSVCNAVITMYSRCGGILDSELAFRQIHSPNLVSWNTIIAAFAQHGHYEKALIFFS 394 (597)
Q Consensus 315 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 394 (597)
...|++++|...++.+.+.... +...+..+ ......+..+...+...|++++|++.++
T Consensus 144 ~~~g~~~~A~~~~~~al~~~p~-~~~~~~~~---------------------~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 201 (365)
T 4eqf_A 144 TNTSHQQDACEALKNWIKQNPK-YKYLVKNK---------------------KGSPGLTRRMSKSPVDSSVLEGVKELYL 201 (365)
T ss_dssp HHTTCHHHHHHHHHHHHHHCHH-HHCC----------------------------------------CCHHHHHHHHHHH
T ss_pred HccccHHHHHHHHHHHHHhCcc-chHHHhhh---------------------ccchHHHHHHHHHHhhhhhHHHHHHHHH
Confidence 4555555555554444443200 00000000 0112234455778888999999999999
Q ss_pred HHHHCCCC-CChHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHhhCC-CCC-
Q 007573 395 QMGLNGFD-PDGITFLSLLSACGHAGKVNESMDLFELMVKVYGIIPSSEHYTCLVDILSRAGQLEKAWQITQGMP-FEA- 471 (597)
Q Consensus 395 ~m~~~g~~-p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p- 471 (597)
++.+.... ++..++..+...+...|++++|...++++.+. .+.+...+..++.+|...|++++|.+.++++. ..|
T Consensus 202 ~al~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~ 279 (365)
T 4eqf_A 202 EAAHQNGDMIDPDLQTGLGVLFHLSGEFNRAIDAFNAALTV--RPEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPG 279 (365)
T ss_dssp HHHHHSCSSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred HHHHhCcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Confidence 99876422 15788889999999999999999999998874 23457889999999999999999999998875 344
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC------------CCchHHHHHHHHHhcCCcHHHHHHHHH
Q 007573 472 DTGVWGSLLAACVINLNVELGELAAKKMRELDPQ------------NSAVYVMLSNLYAAAGMWRDVTRVRLL 532 (597)
Q Consensus 472 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~------------~~~~~~~l~~~~~~~g~~~~A~~~~~~ 532 (597)
+..++..++.+|...|++++|...+++++++.|+ +..++..++.++...|+.+.+.+..++
T Consensus 280 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 352 (365)
T 4eqf_A 280 FIRSRYNLGISCINLGAYREAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANLG 352 (365)
T ss_dssp CHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHHHHTT
T ss_pred chHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHHh
Confidence 5778999999999999999999999999998876 367789999999999999988887664
No 30
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.76 E-value=4e-17 Score=158.09 Aligned_cols=273 Identities=11% Similarity=-0.002 Sum_probs=192.1
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHhhcC---CCChhHHHHHHHHHHHcCChhHHHHHHHHhHHCCCCCCHHHHHHHHHHHh
Q 007573 239 FVVTAMITGFCKVGMLENARLLFERIQ---PKDCVSFNAMIAGYAQNGVAEEALRLFSGMIKMDMQPDDATLVSVFTACS 315 (597)
Q Consensus 239 ~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~ 315 (597)
..+..+...+.+.|++++|..+|+++. +.+..+|..+...+...|++++|...++++.+.. +.+...+..+...+.
T Consensus 22 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~ 100 (327)
T 3cv0_A 22 ENPMEEGLSMLKLANLAEAALAFEAVCQAAPEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVSHT 100 (327)
T ss_dssp SCHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cCCHHHHHHHHHHHH
Confidence 345566667777777777777776653 3355667777777777777777777777776642 224445555555555
Q ss_pred ccchhHHHHHHHHHHHHhCCCCcccHHHHHHHHHHhcCCHHHHHHHHhccCCCChhhHHHH-HH-HHHHcCCHHHHHHHH
Q 007573 316 ALQLLNEGRQSHVLVIRNGFEANVSVCNAVITMYSRCGGILDSELAFRQIHSPNLVSWNTI-IA-AFAQHGHYEKALIFF 393 (597)
Q Consensus 316 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l-i~-~~~~~g~~~~A~~~~ 393 (597)
..|++++|...+..+.+... .+...+..+.... ++......+ .. .+...|++++|.+.+
T Consensus 101 ~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~~~~~------------------~~~~~~~~~~~~~~~~~~~~~~~A~~~~ 161 (327)
T 3cv0_A 101 NEHNANAALASLRAWLLSQP-QYEQLGSVNLQAD------------------VDIDDLNVQSEDFFFAAPNEYRECRTLL 161 (327)
T ss_dssp HTTCHHHHHHHHHHHHHTST-TTTTC--------------------------------------CCTTSHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHhCC-ccHHHHHHHhHHH------------------HHHHHHHHHHHhHHHHHcccHHHHHHHH
Confidence 66666666666665555431 1111111110000 000011111 22 266678899999999
Q ss_pred HHHHHCCCCCChHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHhhCC-C-CC
Q 007573 394 SQMGLNGFDPDGITFLSLLSACGHAGKVNESMDLFELMVKVYGIIPSSEHYTCLVDILSRAGQLEKAWQITQGMP-F-EA 471 (597)
Q Consensus 394 ~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~-~p 471 (597)
+++.+.. +.+...+..+...+...|++++|.+.++.+.+. .+.+...+..++..|.+.|++++|.+.++++. . +.
T Consensus 162 ~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~ 238 (327)
T 3cv0_A 162 HAALEMN-PNDAQLHASLGVLYNLSNNYDSAAANLRRAVEL--RPDDAQLWNKLGATLANGNRPQEALDAYNRALDINPG 238 (327)
T ss_dssp HHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred HHHHhhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC
Confidence 9988753 346778888889999999999999999998864 23457888999999999999999999998865 3 34
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC------------CCchHHHHHHHHHhcCCcHHHHHHHHHHH
Q 007573 472 DTGVWGSLLAACVINLNVELGELAAKKMRELDPQ------------NSAVYVMLSNLYAAAGMWRDVTRVRLLMK 534 (597)
Q Consensus 472 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~------------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 534 (597)
+...+..+...+...|++++|...++++++..|+ ++.++..++.++...|++++|.+++++..
T Consensus 239 ~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l 313 (327)
T 3cv0_A 239 YVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQNV 313 (327)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTCCS
T ss_pred CHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 5778999999999999999999999999999998 67889999999999999999999987543
No 31
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.74 E-value=1.4e-16 Score=163.01 Aligned_cols=374 Identities=11% Similarity=0.015 Sum_probs=233.6
Q ss_pred CcchHHHHHHHHHcCCChHHHHHHHccCC------------CCChhhHHHHHHHHHcCCChHHHHHHHccCCC-------
Q 007573 111 NIVSWNCMIAGCIDNDRIDDAFDYFQAMP------------ERNTATYNAMISGFLKHGRLEEATRLFEQMPR------- 171 (597)
Q Consensus 111 ~~~~~~~ll~~~~~~~~~~~A~~~~~~~~------------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~------- 171 (597)
....|+.|..++...|++++|++.|++.. +....+|+.+..+|...|++++|...+++..+
T Consensus 50 ~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~ 129 (472)
T 4g1t_A 50 KATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSS 129 (472)
T ss_dssp CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhccc
Confidence 45678999999999999999999998764 22346789999999999999999998876532
Q ss_pred ----CCchhHHHHHHHHHh--CCChhHHHHHHHhcc--cC-CcchHHHHHHH---HHcCCChHHHHHHHhhcCCCCCCc-
Q 007573 172 ----RNVISYTAMLDGFMK--KGEVDKARALSDYMS--FK-NVVSWTVMITG---YVKNERFCEARELFYRMPDYDKNV- 238 (597)
Q Consensus 172 ----~~~~~~~~li~~~~~--~g~~~~A~~~~~~m~--~~-~~~~~~~ll~~---~~~~g~~~~a~~~~~~~~~~~~~~- 238 (597)
....++..+..++.+ .+++++|+..|++.. .| +...+..+..+ +...++.++|++.++.+.++.|+.
T Consensus 130 ~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~p~~~ 209 (472)
T 4g1t_A 130 PYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNPDNQ 209 (472)
T ss_dssp SSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHCSSCH
T ss_pred ccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcCCcch
Confidence 123456666555554 457999999999983 34 34455555444 456788889999999988877754
Q ss_pred hHHHHHHHHHHh----cCCHHHHHHHHhhcC---CCChhHHHHHHHHHHHcCChhHHHHHHHHhHHCCCCCC-HHHHHHH
Q 007573 239 FVVTAMITGFCK----VGMLENARLLFERIQ---PKDCVSFNAMIAGYAQNGVAEEALRLFSGMIKMDMQPD-DATLVSV 310 (597)
Q Consensus 239 ~~~~~l~~~~~~----~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~l 310 (597)
.++..+...+.. .|++++|.+.+++.. +.+..++..+...|...|++++|+..+++..+. .|+ ...+..+
T Consensus 210 ~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~l 287 (472)
T 4g1t_A 210 YLKVLLALKLHKMREEGEEEGEGEKLVEEALEKAPGVTDVLRSAAKFYRRKDEPDKAIELLKKALEY--IPNNAYLHCQI 287 (472)
T ss_dssp HHHHHHHHHHHHCC------CHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHh--CCChHHHHHHH
Confidence 455555555544 467888999998753 457788999999999999999999999999875 454 3344444
Q ss_pred HHHHhccchhHHHHHHHHHHHHhCCCCcccHHHHHHHHHHhcCCHHHHHHHHhccC---CCChhhHHHHHHHHHHcCCHH
Q 007573 311 FTACSALQLLNEGRQSHVLVIRNGFEANVSVCNAVITMYSRCGGILDSELAFRQIH---SPNLVSWNTIIAAFAQHGHYE 387 (597)
Q Consensus 311 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~ 387 (597)
...+...+....+ .. . ..........+..+.|...++... +.+..++..+...+...|+++
T Consensus 288 g~~y~~~~~~~~~---------~~-~------~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~lg~~~~~~~~~~ 351 (472)
T 4g1t_A 288 GCCYRAKVFQVMN---------LR-E------NGMYGKRKLLELIGHAVAHLKKADEANDNLFRVCSILASLHALADQYE 351 (472)
T ss_dssp HHHHHHHHHHHHH---------C-------------CHHHHHHHHHHHHHHHHHHHHHCTTTCCCHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHhhh---------HH-H------HHHHHHHHHHhhHHHHHHHHHHHhhcCCchhhhhhhHHHHHHHhccHH
Confidence 3333221111100 00 0 000111112233566777776654 556678889999999999999
Q ss_pred HHHHHHHHHHHCCCCCChH--HHHHHHH-HHhccCcHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHH
Q 007573 388 KALIFFSQMGLNGFDPDGI--TFLSLLS-ACGHAGKVNESMDLFELMVKVYGIIPSSEHYTCLVDILSRAGQLEKAWQIT 464 (597)
Q Consensus 388 ~A~~~~~~m~~~g~~p~~~--~~~~ll~-~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~ 464 (597)
+|++.|++..+....|... .+..+.. .....|+.++|+..|++..+ +.|+....... ...+.+++
T Consensus 352 ~A~~~~~kaL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~---i~~~~~~~~~~---------~~~l~~~~ 419 (472)
T 4g1t_A 352 EAEYYFQKEFSKELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVK---INQKSREKEKM---------KDKLQKIA 419 (472)
T ss_dssp HHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHH---SCCCCHHHHHH---------HHHHHHHH
T ss_pred HHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHh---cCcccHHHHHH---------HHHHHHHH
Confidence 9999999998764333221 2333332 23577999999999998875 45553332222 22333444
Q ss_pred hhCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHH
Q 007573 465 QGMP--FEADTGVWGSLLAACVINLNVELGELAAKKMRELDPQNSAVYVMLS 514 (597)
Q Consensus 465 ~~~~--~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~ 514 (597)
++.. .+.+..+|..++.++...|++++|++.|+++++++|.+|.+...+|
T Consensus 420 ~~~l~~~p~~~~~~~~LG~~~~~~g~~~~A~~~y~kALe~~~~~p~a~~~~G 471 (472)
T 4g1t_A 420 KMRLSKNGADSEALHVLAFLQELNEKMQQADEDSERGLESGSLIPSASSWNG 471 (472)
T ss_dssp HHHHHHCC-CTTHHHHHHHHHHHHHHCC------------------------
T ss_pred HHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcHhhcCC
Confidence 3332 3446779999999999999999999999999999999888776654
No 32
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.74 E-value=1.2e-16 Score=157.49 Aligned_cols=232 Identities=12% Similarity=0.047 Sum_probs=177.0
Q ss_pred ChhHHHHHHHHHHHcCChhHHHHHHHHhHHCCCCCCHHHHHHHHHHHhccchhHHHHHHHHHHHHhCCCCcccHHHHHHH
Q 007573 268 DCVSFNAMIAGYAQNGVAEEALRLFSGMIKMDMQPDDATLVSVFTACSALQLLNEGRQSHVLVIRNGFEANVSVCNAVIT 347 (597)
Q Consensus 268 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 347 (597)
+...|..+...+.+.|++++|+..|+++.+.. +.+..++..+..
T Consensus 64 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~------------------------------------p~~~~~~~~lg~ 107 (365)
T 4eqf_A 64 DWPGAFEEGLKRLKEGDLPVTILFMEAAILQD------------------------------------PGDAEAWQFLGI 107 (365)
T ss_dssp TCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC------------------------------------TTCHHHHHHHHH
T ss_pred chhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC------------------------------------cCCHHHHHHHHH
Confidence 33456777777777777777777777766542 223444555666
Q ss_pred HHHhcCCHHHHHHHHhccC---CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC-----------hHHHHHHHH
Q 007573 348 MYSRCGGILDSELAFRQIH---SPNLVSWNTIIAAFAQHGHYEKALIFFSQMGLNGFDPD-----------GITFLSLLS 413 (597)
Q Consensus 348 ~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-----------~~~~~~ll~ 413 (597)
+|.+.|++++|+..|+++. +.+..+|..+...|...|++++|+..++++.+. .|+ ...+..+..
T Consensus 108 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~l~~ 185 (365)
T 4eqf_A 108 TQAENENEQAAIVALQRCLELQPNNLKALMALAVSYTNTSHQQDACEALKNWIKQ--NPKYKYLVKNKKGSPGLTRRMSK 185 (365)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CHHHHCC----------------
T ss_pred HHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHccccHHHHHHHHHHHHHh--CccchHHHhhhccchHHHHHHHH
Confidence 6666666666666666554 445677888888888888899999888888764 232 223344577
Q ss_pred HHhccCcHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHhhCC--CCCCHHHHHHHHHHHHhcCCHHH
Q 007573 414 ACGHAGKVNESMDLFELMVKVYGIIPSSEHYTCLVDILSRAGQLEKAWQITQGMP--FEADTGVWGSLLAACVINLNVEL 491 (597)
Q Consensus 414 ~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~g~~~~ 491 (597)
.+...|++++|.+.++++.+...-.++...+..++..|.+.|++++|.+.++++. .+.+..+|..++.++...|++++
T Consensus 186 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~ 265 (365)
T 4eqf_A 186 SPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGVLFHLSGEFNRAIDAFNAALTVRPEDYSLWNRLGATLANGDRSEE 265 (365)
T ss_dssp ---CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHH
Confidence 8899999999999999998863333368899999999999999999999999876 34467899999999999999999
Q ss_pred HHHHHHHHHhcCCCCCchHHHHHHHHHhcCCcHHHHHHHHHHHhCC
Q 007573 492 GELAAKKMRELDPQNSAVYVMLSNLYAAAGMWRDVTRVRLLMKEQG 537 (597)
Q Consensus 492 a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 537 (597)
|+..++++++.+|+++.++..++.+|...|++++|.+.++++.+..
T Consensus 266 A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 311 (365)
T 4eqf_A 266 AVEAYTRALEIQPGFIRSRYNLGISCINLGAYREAVSNFLTALSLQ 311 (365)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 9999999999999999999999999999999999999999998744
No 33
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.70 E-value=3.4e-15 Score=144.47 Aligned_cols=224 Identities=12% Similarity=0.033 Sum_probs=121.5
Q ss_pred chHHHHHHHHHcCCChHHHHHHHhhcCCCCC-CchHHHHHHHHHHhcCCHHHHHHHHhhcC---CCChhHHHHHHHHHHH
Q 007573 206 VSWTVMITGYVKNERFCEARELFYRMPDYDK-NVFVVTAMITGFCKVGMLENARLLFERIQ---PKDCVSFNAMIAGYAQ 281 (597)
Q Consensus 206 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~ 281 (597)
..+..+...+...|++++|..+++.+.+..| +..++..+...+.+.|++++|...++++. +.+..++..+...+..
T Consensus 22 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~ 101 (327)
T 3cv0_A 22 ENPMEEGLSMLKLANLAEAALAFEAVCQAAPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTN 101 (327)
T ss_dssp SCHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCCHHHHHHHHHHHHH
Confidence 3445555556666666666666666555333 34455666666666677777766666543 3455677777777788
Q ss_pred cCChhHHHHHHHHhHHCCCCCCHHHHHHHH--------------H--HHhccchhHHHHHHHHHHHHhCCCCcccHHHHH
Q 007573 282 NGVAEEALRLFSGMIKMDMQPDDATLVSVF--------------T--ACSALQLLNEGRQSHVLVIRNGFEANVSVCNAV 345 (597)
Q Consensus 282 ~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll--------------~--~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 345 (597)
.|++++|+..++++.+.. |+.......+ . .+...|++++|...+..+.+.. +.+..++..+
T Consensus 102 ~~~~~~A~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l 178 (327)
T 3cv0_A 102 EHNANAALASLRAWLLSQ--PQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMN-PNDAQLHASL 178 (327)
T ss_dssp TTCHHHHHHHHHHHHHTS--TTTTTC--------------------CCTTSHHHHHHHHHHHHHHHHHS-TTCHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhC--CccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhC-CCCHHHHHHH
Confidence 888888888887777642 2222111111 2 2556666777777766666554 2344445555
Q ss_pred HHHHHhcCCHHHHHHHHhccC---CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHhccCcHH
Q 007573 346 ITMYSRCGGILDSELAFRQIH---SPNLVSWNTIIAAFAQHGHYEKALIFFSQMGLNGFDPDGITFLSLLSACGHAGKVN 422 (597)
Q Consensus 346 ~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~ 422 (597)
...|.+.|++++|...++++. +.+..+|..+...+...|++++|+..++++.+.. +.+..++..+..++...|+++
T Consensus 179 a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~g~~~ 257 (327)
T 3cv0_A 179 GVLYNLSNNYDSAAANLRRAVELRPDDAQLWNKLGATLANGNRPQEALDAYNRALDIN-PGYVRVMYNMAVSYSNMSQYD 257 (327)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhccHH
Confidence 555555555555555554443 2334445555555555555555555555544431 222344444444455555555
Q ss_pred HHHHHHHHhHH
Q 007573 423 ESMDLFELMVK 433 (597)
Q Consensus 423 ~a~~~~~~~~~ 433 (597)
+|.+.++++.+
T Consensus 258 ~A~~~~~~a~~ 268 (327)
T 3cv0_A 258 LAAKQLVRAIY 268 (327)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 55555544443
No 34
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.69 E-value=1.2e-14 Score=137.70 Aligned_cols=244 Identities=7% Similarity=-0.034 Sum_probs=170.1
Q ss_pred HHHHcCCChHHHHHHHccCCCCCc----hhHHHHHHHHHhCCChhHHHHHHHhcccCCcchHHHHHHHHHcCCChHHHHH
Q 007573 151 SGFLKHGRLEEATRLFEQMPRRNV----ISYTAMLDGFMKKGEVDKARALSDYMSFKNVVSWTVMITGYVKNERFCEARE 226 (597)
Q Consensus 151 ~~~~~~g~~~~A~~~~~~~~~~~~----~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~ll~~~~~~g~~~~a~~ 226 (597)
+-....|++..|+..++.....++ .....+.++|...|+++.|+..++....|+..++..+...+...++.++|.+
T Consensus 7 ~~~~~~g~y~~ai~~~~~~~~~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~~~~~~~~a~~~la~~~~~~~~~~~A~~ 86 (291)
T 3mkr_A 7 KNAFYIGSYQQCINEAQRVKPSSPERDVERDVFLYRAYLAQRKYGVVLDEIKPSSAPELQAVRMFAEYLASHSRRDAIVA 86 (291)
T ss_dssp HHHHHTTCHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCTTSCHHHHHHHHHHHHHHCSTTHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhcccCCchhhHHHHHHHHHHHHHCCCHHHHHHHhcccCChhHHHHHHHHHHHcCCCcHHHHHH
Confidence 334456888888888777655332 2345567888888888888877766555566777778888888888888888
Q ss_pred HHhhcCCC--CCC-chHHHHHHHHHHhcCCHHHHHHHHhhcCCCChhHHHHHHHHHHHcCChhHHHHHHHHhHHCCCCCC
Q 007573 227 LFYRMPDY--DKN-VFVVTAMITGFCKVGMLENARLLFERIQPKDCVSFNAMIAGYAQNGVAEEALRLFSGMIKMDMQPD 303 (597)
Q Consensus 227 ~~~~~~~~--~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~ 303 (597)
.++.+... .|+ ...+..+...+.+.|++++|++.+++ +.+...+..++..|.+.|++++|...|+++.+.. |+
T Consensus 87 ~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~--~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~--p~ 162 (291)
T 3mkr_A 87 ELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ--GDSLECMAMTVQILLKLDRLDLARKELKKMQDQD--ED 162 (291)
T ss_dssp HHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT--CCSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TT
T ss_pred HHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC--cC
Confidence 88887542 354 45666777888999999999999988 5678889999999999999999999999998763 55
Q ss_pred HHHHH---HHHHHHhccchhHHHHHHHHHHHHhCCCCcccHHHHHHHHHHhcCCHHHHHHHHhccC---CCChhhHHHHH
Q 007573 304 DATLV---SVFTACSALQLLNEGRQSHVLVIRNGFEANVSVCNAVITMYSRCGGILDSELAFRQIH---SPNLVSWNTII 377 (597)
Q Consensus 304 ~~~~~---~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li 377 (597)
..... ..+..+...|+.++|..+++.+.+.. +.+..+++.+..++.+.|++++|+..|++.. +.+..++..++
T Consensus 163 ~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~-p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~l~~l~ 241 (291)
T 3mkr_A 163 ATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKC-SPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSGHPETLINLV 241 (291)
T ss_dssp CHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHS-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence 43211 12233334577777877777777763 4556666666666666666666666666654 34555666666
Q ss_pred HHHHHcCCHHH-HHHHHHHHHHC
Q 007573 378 AAFAQHGHYEK-ALIFFSQMGLN 399 (597)
Q Consensus 378 ~~~~~~g~~~~-A~~~~~~m~~~ 399 (597)
..+...|+.++ +.++++++.+.
T Consensus 242 ~~~~~~g~~~eaa~~~~~~~~~~ 264 (291)
T 3mkr_A 242 VLSQHLGKPPEVTNRYLSQLKDA 264 (291)
T ss_dssp HHHHHTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHcCCCHHHHHHHHHHHHHh
Confidence 66666666654 45566666543
No 35
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.68 E-value=1.5e-15 Score=137.37 Aligned_cols=194 Identities=11% Similarity=-0.008 Sum_probs=158.1
Q ss_pred CCcccHHHHHHHHHHhcCCHHHHHHHHhccC---CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCChHHHHHHH
Q 007573 336 EANVSVCNAVITMYSRCGGILDSELAFRQIH---SPNLVSWNTIIAAFAQHGHYEKALIFFSQMGLNGFDPDGITFLSLL 412 (597)
Q Consensus 336 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll 412 (597)
|++...+..+...+.+.|++++|...|++.. +.+...|..+...+.+.|++++|+..+++..+.. +.+...+..+.
T Consensus 2 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg 80 (217)
T 2pl2_A 2 QTAEQNPLRLGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVART-PRYLGGYMVLS 80 (217)
T ss_dssp --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHH
Confidence 5677788888899999999999999998765 5567889999999999999999999999998753 33467888888
Q ss_pred HHHhcc-----------CcHHHHHHHHHHhHHhcCCCC-ChHHHHHHHHHHhhcCCHHHHHHHHhhCC-CCCCHHHHHHH
Q 007573 413 SACGHA-----------GKVNESMDLFELMVKVYGIIP-SSEHYTCLVDILSRAGQLEKAWQITQGMP-FEADTGVWGSL 479 (597)
Q Consensus 413 ~~~~~~-----------g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p~~~~~~~l 479 (597)
.++... |++++|...+++..+. .| +...+..+..+|...|++++|++.+++.. ...+...+..+
T Consensus 81 ~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~---~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~l 157 (217)
T 2pl2_A 81 EAYVALYRQAEDRERGKGYLEQALSVLKDAERV---NPRYAPLHLQRGLVYALLGERDKAEASLKQALALEDTPEIRSAL 157 (217)
T ss_dssp HHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHHH
T ss_pred HHHHHhhhhhhhhcccccCHHHHHHHHHHHHHh---CcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcccchHHHHHH
Confidence 899999 9999999999999864 34 47888999999999999999999998875 22778899999
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCcHHHHHHHHHH
Q 007573 480 LAACVINLNVELGELAAKKMRELDPQNSAVYVMLSNLYAAAGMWRDVTRVRLLM 533 (597)
Q Consensus 480 ~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 533 (597)
..++...|++++|+..++++++++|+++.++..++.++...|++++|.+.+++.
T Consensus 158 a~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 211 (217)
T 2pl2_A 158 AELYLSMGRLDEALAQYAKALEQAPKDLDLRVRYASALLLKGKAEEAARAAALE 211 (217)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTC--------------
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999998865
No 36
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.65 E-value=1.4e-14 Score=134.88 Aligned_cols=226 Identities=12% Similarity=0.029 Sum_probs=166.8
Q ss_pred hHHHHHHHHHHHcCChhHHHHHHHHhHHCCCCCCHHHHHHHHHHHhccchhHHHHHHHHHHHHhCCCCcccHHHHHHHHH
Q 007573 270 VSFNAMIAGYAQNGVAEEALRLFSGMIKMDMQPDDATLVSVFTACSALQLLNEGRQSHVLVIRNGFEANVSVCNAVITMY 349 (597)
Q Consensus 270 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 349 (597)
..|..+...+...|++++|+..|++..+.. .+...+..+..++...|++++|...+..+++.....
T Consensus 6 ~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~------------ 71 (258)
T 3uq3_A 6 DKEKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREM------------ 71 (258)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT------------
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCccc------------
Confidence 456666667777777777777777766654 444444444444444444444444444443321000
Q ss_pred HhcCCHHHHHHHHhccCCCC----hhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHhccCcHHHHH
Q 007573 350 SRCGGILDSELAFRQIHSPN----LVSWNTIIAAFAQHGHYEKALIFFSQMGLNGFDPDGITFLSLLSACGHAGKVNESM 425 (597)
Q Consensus 350 ~~~g~~~~A~~~~~~~~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~ 425 (597)
.++ ...|..+...+...|++++|++.|+++.+. .|+. ..+...|++++|.
T Consensus 72 -----------------~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~--~~~~-------~~~~~~~~~~~a~ 125 (258)
T 3uq3_A 72 -----------------RADYKVISKSFARIGNAYHKLGDLKKTIEYYQKSLTE--HRTA-------DILTKLRNAEKEL 125 (258)
T ss_dssp -----------------TCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCCH-------HHHHHHHHHHHHH
T ss_pred -----------------ccchHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhc--Cchh-------HHHHHHhHHHHHH
Confidence 011 456777888888889999999999888874 4553 3455667889999
Q ss_pred HHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHhhCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 007573 426 DLFELMVKVYGIIPSSEHYTCLVDILSRAGQLEKAWQITQGMP--FEADTGVWGSLLAACVINLNVELGELAAKKMRELD 503 (597)
Q Consensus 426 ~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 503 (597)
..++.+.+. .+.+...+..++..+...|++++|.+.++++. .+.+..+|..++..+...|++++|+..++++++.+
T Consensus 126 ~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~ 203 (258)
T 3uq3_A 126 KKAEAEAYV--NPEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKD 203 (258)
T ss_dssp HHHHHHHHC--CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHc--CcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC
Confidence 999888752 22346778889999999999999999998875 34467789999999999999999999999999999
Q ss_pred CCCCchHHHHHHHHHhcCCcHHHHHHHHHHHhCC
Q 007573 504 PQNSAVYVMLSNLYAAAGMWRDVTRVRLLMKEQG 537 (597)
Q Consensus 504 p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 537 (597)
|+++.++..++.+|...|++++|.+.+++..+..
T Consensus 204 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~ 237 (258)
T 3uq3_A 204 PNFVRAYIRKATAQIAVKEYASALETLDAARTKD 237 (258)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC
Confidence 9999999999999999999999999999987643
No 37
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.63 E-value=1.5e-14 Score=134.62 Aligned_cols=235 Identities=11% Similarity=0.007 Sum_probs=171.2
Q ss_pred chHHHHHHHHHHhcCCHHHHHHHHhhcCC--CChhHHHHHHHHHHHcCChhHHHHHHHHhHHCC--CCCC----HHHHHH
Q 007573 238 VFVVTAMITGFCKVGMLENARLLFERIQP--KDCVSFNAMIAGYAQNGVAEEALRLFSGMIKMD--MQPD----DATLVS 309 (597)
Q Consensus 238 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g--~~p~----~~~~~~ 309 (597)
...+..+...+...|++++|...|++..+ .+...|..+...+...|++++|+..+++..+.. ..|+ ...+..
T Consensus 5 a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~ 84 (258)
T 3uq3_A 5 ADKEKAEGNKFYKARQFDEAIEHYNKAWELHKDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFAR 84 (258)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHhhccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHHH
Confidence 34678889999999999999999987532 677899999999999999999999999987642 1112 233444
Q ss_pred HHHHHhccchhHHHHHHHHHHHHhCCCCcccHHHHHHHHHHhcCCHHHHHHHHhccCCCChhhHHHHHHHHHHcCCHHHH
Q 007573 310 VFTACSALQLLNEGRQSHVLVIRNGFEANVSVCNAVITMYSRCGGILDSELAFRQIHSPNLVSWNTIIAAFAQHGHYEKA 389 (597)
Q Consensus 310 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 389 (597)
+...+...|++++|...+..+.+.. |+. ..+...|++++|
T Consensus 85 l~~~~~~~~~~~~A~~~~~~a~~~~---------------------------------~~~-------~~~~~~~~~~~a 124 (258)
T 3uq3_A 85 IGNAYHKLGDLKKTIEYYQKSLTEH---------------------------------RTA-------DILTKLRNAEKE 124 (258)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC---------------------------------CCH-------HHHHHHHHHHHH
T ss_pred HHHHHHHcccHHHHHHHHHHHHhcC---------------------------------chh-------HHHHHHhHHHHH
Confidence 4444444444444444444444332 221 235556778888
Q ss_pred HHHHHHHHHCCCCCChHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHhhCC-
Q 007573 390 LIFFSQMGLNGFDPDGITFLSLLSACGHAGKVNESMDLFELMVKVYGIIPSSEHYTCLVDILSRAGQLEKAWQITQGMP- 468 (597)
Q Consensus 390 ~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~- 468 (597)
...++++.... +.+...+..+...+...|++++|...++.+.+. .+.+...+..++..|.+.|++++|.+.+++..
T Consensus 125 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~ 201 (258)
T 3uq3_A 125 LKKAEAEAYVN-PEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKR--APEDARGYSNRAAALAKLMSFPEAIADCNKAIE 201 (258)
T ss_dssp HHHHHHHHHCC-HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcC-cchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhc--CcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 88888877642 223556777778888888888888888888764 23357788888888899999999998888765
Q ss_pred -CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC------CCCCchHHHHHH
Q 007573 469 -FEADTGVWGSLLAACVINLNVELGELAAKKMRELD------PQNSAVYVMLSN 515 (597)
Q Consensus 469 -~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~------p~~~~~~~~l~~ 515 (597)
.+.+...|..+...+...|++++|...++++++++ |.+..++..+..
T Consensus 202 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~p~~~~~~~~l~~ 255 (258)
T 3uq3_A 202 KDPNFVRAYIRKATAQIAVKEYASALETLDAARTKDAEVNNGSSAREIDQLYYK 255 (258)
T ss_dssp HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHH
T ss_pred hCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhChhhcCCCchHHHHHHHHH
Confidence 33457788889999999999999999999999988 766665555543
No 38
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.63 E-value=3.1e-16 Score=163.53 Aligned_cols=131 Identities=14% Similarity=0.176 Sum_probs=113.6
Q ss_pred CCcccHHHHHHHHHHhcCCHHHHHHHHhccC-------CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCChHHH
Q 007573 336 EANVSVCNAVITMYSRCGGILDSELAFRQIH-------SPNLVSWNTIIAAFAQHGHYEKALIFFSQMGLNGFDPDGITF 408 (597)
Q Consensus 336 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-------~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~ 408 (597)
..-..+||+||++|++.|++++|.++|+.|. .||+++||+||.+|++.|+.++|.++|++|.+.|+.||.+||
T Consensus 124 ~~~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTY 203 (1134)
T 3spa_A 124 SGQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSY 203 (1134)
T ss_dssp CHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHH
T ss_pred HhHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHH
Confidence 3345689999999999999999999997653 689999999999999999999999999999999999999999
Q ss_pred HHHHHHHhccCc-HHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHhhC
Q 007573 409 LSLLSACGHAGK-VNESMDLFELMVKVYGIIPSSEHYTCLVDILSRAGQLEKAWQITQGM 467 (597)
Q Consensus 409 ~~ll~~~~~~g~-~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 467 (597)
+++|.++++.|+ .++|.++|++|.+. |+.||..+|++++....+.+-++...++...+
T Consensus 204 ntLI~glcK~G~~~e~A~~Ll~EM~~k-G~~PD~vtY~~ll~~~eR~~vL~~Vrkv~P~f 262 (1134)
T 3spa_A 204 AAALQCMGRQDQDAGTIERCLEQMSQE-GLKLQALFTAVLLSEEDRATVLKAVHKVKPTF 262 (1134)
T ss_dssp HHHHHHHHHHTCCHHHHHHHHHHHHHH-TCCSHHHHHHSCCCHHHHHHHHHHHGGGCCCC
T ss_pred HHHHHHHHhCCCcHHHHHHHHHHHHHc-CCCCChhhcccccChhhHHHHHHHHHHhCccc
Confidence 999999999997 57899999999987 99999999999988777766555555554333
No 39
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.61 E-value=1.7e-14 Score=145.80 Aligned_cols=369 Identities=9% Similarity=0.015 Sum_probs=188.8
Q ss_pred HHHcCCChHHHHHHHccCC-CCChhhHHHHHHHHHcCCCh---HHHHHHHccCCCCCchhHHHHHHHHHhCC-----Chh
Q 007573 121 GCIDNDRIDDAFDYFQAMP-ERNTATYNAMISGFLKHGRL---EEATRLFEQMPRRNVISYTAMLDGFMKKG-----EVD 191 (597)
Q Consensus 121 ~~~~~~~~~~A~~~~~~~~-~~~~~~~~~l~~~~~~~g~~---~~A~~~~~~~~~~~~~~~~~li~~~~~~g-----~~~ 191 (597)
.+.+.|++++|.+.|++.. ..++..+..|...|...|+. ++|...|++..+.++..+..+...+...| +++
T Consensus 12 ~~~~~g~~~~A~~~~~~aa~~g~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~~~~A~~~Lg~~~~~~~~~~~~~~~ 91 (452)
T 3e4b_A 12 EALKRGDTVTAQQNYQQLAELGYSEAQVGLADIQVGTRDPAQIKQAEATYRAAADTSPRAQARLGRLLAAKPGATEAEHH 91 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTCCTGGGTCC----------------------------CHHHHHHHHHTC--CCHHHHH
T ss_pred HHHhCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhCCHHHHHHHHHHHHhCCCCCCcCHH
Confidence 3334444444444444443 12333344444444445555 55555555554444445555555444433 445
Q ss_pred HHHHHHHhcccC-CcchHHHHHHHHHcCCChHHH---HHHHhhcCCCCCCchHHHHHHHHHHhcC----CHHHHHHHHhh
Q 007573 192 KARALSDYMSFK-NVVSWTVMITGYVKNERFCEA---RELFYRMPDYDKNVFVVTAMITGFCKVG----MLENARLLFER 263 (597)
Q Consensus 192 ~A~~~~~~m~~~-~~~~~~~ll~~~~~~g~~~~a---~~~~~~~~~~~~~~~~~~~l~~~~~~~g----~~~~A~~~~~~ 263 (597)
+|+..|++...+ +...+..+...|...+..+++ .+.+..... ..+......+...|...+ ..+.+..+++.
T Consensus 92 ~A~~~~~~Aa~~g~~~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~-~g~~~a~~~Lg~~y~~~~~~~~~~~~a~~~~~~ 170 (452)
T 3e4b_A 92 EAESLLKKAFANGEGNTLIPLAMLYLQYPHSFPNVNAQQQISQWQA-AGYPEAGLAQVLLYRTQGTYDQHLDDVERICKA 170 (452)
T ss_dssp HHHHHHHHHHHTTCSSCHHHHHHHHHHCGGGCTTCCHHHHHHHHHH-HTCTTHHHHHHHHHHHHTCGGGGHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHH-CCCHHHHHHHHHHHHcCCCcccCHHHHHHHHHH
Confidence 555555555333 234455555555444332222 222222111 012344455555555555 33444445555
Q ss_pred cCCCChhHHHHHHHHHHHcC---ChhHHHHHHHHhHHCCCCCCHHHHHHHHHHHhccchhHHHHHHHHHHHHhCCCCccc
Q 007573 264 IQPKDCVSFNAMIAGYAQNG---VAEEALRLFSGMIKMDMQPDDATLVSVFTACSALQLLNEGRQSHVLVIRNGFEANVS 340 (597)
Q Consensus 264 ~~~~~~~~~~~li~~~~~~g---~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 340 (597)
....++.++..|...|...| +.++|+..|++..+.| .++...+
T Consensus 171 a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g-~~~a~~~--------------------------------- 216 (452)
T 3e4b_A 171 ALNTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRG-TVTAQRV--------------------------------- 216 (452)
T ss_dssp HTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTT-CSCHHHH---------------------------------
T ss_pred HHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCC-CHHHHHH---------------------------------
Confidence 55555556666666666666 6666666666666654 2222222
Q ss_pred HHHHHHHHHHhc----CCHHHHHHHHhccCCCChhhHHHHHHH-H--HHcCCHHHHHHHHHHHHHCCCCCChHHHHHHHH
Q 007573 341 VCNAVITMYSRC----GGILDSELAFRQIHSPNLVSWNTIIAA-F--AQHGHYEKALIFFSQMGLNGFDPDGITFLSLLS 413 (597)
Q Consensus 341 ~~~~l~~~~~~~----g~~~~A~~~~~~~~~~~~~~~~~li~~-~--~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~ 413 (597)
..|..+|... ++.++|...|++..+.++..+..+... + ...+++++|+++|++..+.| +...+..+..
T Consensus 217 --~~Lg~~y~~g~~~~~d~~~A~~~~~~aa~g~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~ 291 (452)
T 3e4b_A 217 --DSVARVLGDATLGTPDEKTAQALLEKIAPGYPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAAD---QPRAELLLGK 291 (452)
T ss_dssp --HHHHHHHTCGGGSSCCHHHHHHHHHHHGGGSTHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTT---CHHHHHHHHH
T ss_pred --HHHHHHHhCCCCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHH
Confidence 2233333222 455555555555443344455555554 3 34678888888888887765 4555666666
Q ss_pred HHhccC-----cHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhh----cCCHHHHHHHHhhCCCCCCHHHHHHHHHHHH
Q 007573 414 ACGHAG-----KVNESMDLFELMVKVYGIIPSSEHYTCLVDILSR----AGQLEKAWQITQGMPFEADTGVWGSLLAACV 484 (597)
Q Consensus 414 ~~~~~g-----~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~ 484 (597)
.|. .| ++++|.+.|++.. .-++..+..|..+|.. ..+.++|.+.|++.....+......|...|.
T Consensus 292 ~y~-~G~g~~~d~~~A~~~~~~Aa-----~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~~~A~~~Lg~~y~ 365 (452)
T 3e4b_A 292 LYY-EGKWVPADAKAAEAHFEKAV-----GREVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARNGQNSADFAIAQLFS 365 (452)
T ss_dssp HHH-HCSSSCCCHHHHHHHHHTTT-----TTCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTTCTTHHHHHHHHHH
T ss_pred HHH-cCCCCCCCHHHHHHHHHHHh-----CCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhChHHHHHHHHHHHH
Confidence 665 44 8888888887664 3356677777777765 3488888888887653445556666666665
Q ss_pred h----cCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCcHHHHHHHHHHHh
Q 007573 485 I----NLNVELGELAAKKMRELDPQNSAVYVMLSNLYAAAGMWRDVTRVRLLMKE 535 (597)
Q Consensus 485 ~----~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 535 (597)
. ..|.++|...++++.+.++.........+......++.++|.++.++...
T Consensus 366 ~G~g~~~d~~~A~~~~~~A~~~g~~~a~~~l~~l~~~~~~~~~~~a~~~~~~~~~ 420 (452)
T 3e4b_A 366 QGKGTKPDPLNAYVFSQLAKAQDTPEANDLATQLEAPLTPAQRAEGQRLVQQELA 420 (452)
T ss_dssp SCTTBCCCHHHHHHHHHHHHTTCCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHH
T ss_pred hCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence 3 45889999999999887765433222222222334456677777666554
No 40
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.61 E-value=5.7e-14 Score=132.12 Aligned_cols=239 Identities=9% Similarity=-0.091 Sum_probs=167.2
Q ss_pred CChhHHHHHHHHhHHCCCC--C-CHHHHHHHHHHHhccchhHHHHHHHHHHHHhCCCCcccHHHHHHHHHHhcCCHHHHH
Q 007573 283 GVAEEALRLFSGMIKMDMQ--P-DDATLVSVFTACSALQLLNEGRQSHVLVIRNGFEANVSVCNAVITMYSRCGGILDSE 359 (597)
Q Consensus 283 g~~~~A~~~~~~m~~~g~~--p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 359 (597)
|++++|+..|+++.+.... | +...+..+...+...|++++|...+..+++.. +.+..++..+...|...|++++|.
T Consensus 19 ~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~ 97 (275)
T 1xnf_A 19 LQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDAAY 97 (275)
T ss_dssp HHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHH
T ss_pred chHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHccCHHHHH
Confidence 4455555555555543211 1 23334444455555555555555555555543 334566677777777778888888
Q ss_pred HHHhccC---CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHhccCcHHHHHHHHHHhHHhcC
Q 007573 360 LAFRQIH---SPNLVSWNTIIAAFAQHGHYEKALIFFSQMGLNGFDPDGITFLSLLSACGHAGKVNESMDLFELMVKVYG 436 (597)
Q Consensus 360 ~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~ 436 (597)
..|++.. +.+...|..+...+...|++++|+..|+++.+. .|+.......+..+...|++++|...++.....
T Consensus 98 ~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~-- 173 (275)
T 1xnf_A 98 EAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQD--DPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEK-- 173 (275)
T ss_dssp HHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHH--
T ss_pred HHHHHHHhcCccccHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHhcCHHHHHHHHHHHHhc--
Confidence 7777665 456778888999999999999999999999875 455555555555667779999999999888764
Q ss_pred CCCChHHHHHHHHHHhhcCCHHHHHHHHhhCC-CCCC-----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchH
Q 007573 437 IIPSSEHYTCLVDILSRAGQLEKAWQITQGMP-FEAD-----TGVWGSLLAACVINLNVELGELAAKKMRELDPQNSAVY 510 (597)
Q Consensus 437 ~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p~-----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~ 510 (597)
.+++...+ .++..+...++.++|.+.+++.. ..|+ ...+..++..+...|++++|...++++++.+|++...+
T Consensus 174 ~~~~~~~~-~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 252 (275)
T 1xnf_A 174 SDKEQWGW-NIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVHNFVEH 252 (275)
T ss_dssp SCCCSTHH-HHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCTTCHHH
T ss_pred CCcchHHH-HHHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCchhHHHH
Confidence 23444444 37777888888999999998765 2232 46788899999999999999999999999999875544
Q ss_pred HHHHHHHHhcCCcHHHHHHH
Q 007573 511 VMLSNLYAAAGMWRDVTRVR 530 (597)
Q Consensus 511 ~~l~~~~~~~g~~~~A~~~~ 530 (597)
+.++...|++++|++.+
T Consensus 253 ---~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 253 ---RYALLELSLLGQDQDDL 269 (275)
T ss_dssp ---HHHHHHHHHHHHC----
T ss_pred ---HHHHHHHHHHHhhHHHH
Confidence 66788889999988776
No 41
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.60 E-value=9.5e-16 Score=159.95 Aligned_cols=147 Identities=12% Similarity=0.101 Sum_probs=119.4
Q ss_pred chHHHHHHHHHHhcCCHHHHHHHHhhcC-------CCChhHHHHHHHHHHHcCChhHHHHHHHHhHHCCCCCCHHHHHHH
Q 007573 238 VFVVTAMITGFCKVGMLENARLLFERIQ-------PKDCVSFNAMIAGYAQNGVAEEALRLFSGMIKMDMQPDDATLVSV 310 (597)
Q Consensus 238 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~-------~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l 310 (597)
..+|++||++|++.|++++|.++|++|. .+|+++||+||.+|++.|+.++|.++|++|.+.|+.||..||+++
T Consensus 127 ~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYntL 206 (1134)
T 3spa_A 127 QQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAA 206 (1134)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHHH
Confidence 4579999999999999999999997653 579999999999999999999999999999999999999999999
Q ss_pred HHHHhccchh-HHHHHHHHHHHHhCCCCcccHHHHHHHHHHhcCCHHHHHHHHhccCC-----CChhhHHHHHHHHHHcC
Q 007573 311 FTACSALQLL-NEGRQSHVLVIRNGFEANVSVCNAVITMYSRCGGILDSELAFRQIHS-----PNLVSWNTIIAAFAQHG 384 (597)
Q Consensus 311 l~~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~~~~~~~li~~~~~~g 384 (597)
|.++++.|.. +.|.+++++|.+.|+.||..+|++++....+.+-++.+.++...+.. +.+.+...+.+.|.+.+
T Consensus 207 I~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~~vL~~Vrkv~P~f~p~~~~~~~~~t~~LL~dl~s~d~ 286 (1134)
T 3spa_A 207 LQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRATVLKAVHKVKPTFSLPPQLPPPVNTSKLLRDVYAKDG 286 (1134)
T ss_dssp HHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHHHHHHHHGGGCCCCCCCCCCCCCCCCCTTTHHHHCCCS
T ss_pred HHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHHHHHHHHHHhCcccCCCCCCcccccchHHHHHHHccCC
Confidence 9999999974 78899999999999999999999999887776555555444444432 11234444555555444
No 42
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.60 E-value=4.9e-14 Score=132.38 Aligned_cols=247 Identities=12% Similarity=-0.008 Sum_probs=137.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHhhcCC---CChhHHHHHHHHHHHcCChhHHHHHHHHhHHCCCCCC--HHHHHHHHHHH
Q 007573 240 VVTAMITGFCKVGMLENARLLFERIQP---KDCVSFNAMIAGYAQNGVAEEALRLFSGMIKMDMQPD--DATLVSVFTAC 314 (597)
Q Consensus 240 ~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~--~~~~~~ll~~~ 314 (597)
........+...|++++|+..|++..+ .+...|..+...|...|++++|+..+++..+.+..|+ ...+..+...+
T Consensus 5 ~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~~ 84 (272)
T 3u4t_A 5 VEFRYADFLFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKIL 84 (272)
T ss_dssp CHHHHHHHHHTTTCHHHHHHHHHHHHHTTCCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHHH
Confidence 344556667777777777777776532 3445677777777777777777777777766321111 11244444444
Q ss_pred hccchhHHHHHHHHHHHHhCCCCcccHHHHHHHHHHhcCCHHHHHHHHhccCCCChhhHHHHHHHHHHcCCHHHHHHHHH
Q 007573 315 SALQLLNEGRQSHVLVIRNGFEANVSVCNAVITMYSRCGGILDSELAFRQIHSPNLVSWNTIIAAFAQHGHYEKALIFFS 394 (597)
Q Consensus 315 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 394 (597)
...|++++|...+..+.+.. +.+..+|..+...|...|++++|++.++
T Consensus 85 ~~~~~~~~A~~~~~~a~~~~--------------------------------~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 132 (272)
T 3u4t_A 85 MKKGQDSLAIQQYQAAVDRD--------------------------------TTRLDMYGQIGSYFYNKGNFPLAIQYME 132 (272)
T ss_dssp HHTTCHHHHHHHHHHHHHHS--------------------------------TTCTHHHHHHHHHHHHTTCHHHHHHHHG
T ss_pred HHcccHHHHHHHHHHHHhcC--------------------------------cccHHHHHHHHHHHHHccCHHHHHHHHH
Confidence 45555555555555544433 2333455555555555555555555555
Q ss_pred HHHHCCCCCChHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCC---HHHHHHHHhhCC---
Q 007573 395 QMGLNGFDPDGITFLSLLSACGHAGKVNESMDLFELMVKVYGIIPSSEHYTCLVDILSRAGQ---LEKAWQITQGMP--- 468 (597)
Q Consensus 395 ~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~--- 468 (597)
+..+.. +.+...+..+...+...+++++|.+.|+.+.+.. +.+...+..+..++...|+ +++|...+++..
T Consensus 133 ~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~--p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~ 209 (272)
T 3u4t_A 133 KQIRPT-TTDPKVFYELGQAYYYNKEYVKADSSFVKVLELK--PNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVC 209 (272)
T ss_dssp GGCCSS-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHH
T ss_pred HHhhcC-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC--ccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHH
Confidence 554331 2223334444412333335666666666555431 1224455555555555555 444554444432
Q ss_pred -CCCC------HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcC
Q 007573 469 -FEAD------TGVWGSLLAACVINLNVELGELAAKKMRELDPQNSAVYVMLSNLYAAAG 521 (597)
Q Consensus 469 -~~p~------~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 521 (597)
..|+ ..+|..+...+...|++++|...++++++++|+++.+...+.......+
T Consensus 210 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~~ 269 (272)
T 3u4t_A 210 APGGAKYKDELIEANEYIAYYYTINRDKVKADAAWKNILALDPTNKKAIDGLKMKLEHHH 269 (272)
T ss_dssp GGGGGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHC-------
T ss_pred hcccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCccHHHHHHHhhhhhcccc
Confidence 1122 2467778888999999999999999999999999887777766655443
No 43
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.58 E-value=1.9e-13 Score=126.77 Aligned_cols=197 Identities=8% Similarity=-0.059 Sum_probs=160.9
Q ss_pred ccHHHHHHHHHHhcCCHHHHHHHHhccC---CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHH
Q 007573 339 VSVCNAVITMYSRCGGILDSELAFRQIH---SPNLVSWNTIIAAFAQHGHYEKALIFFSQMGLNGFDPDGITFLSLLSAC 415 (597)
Q Consensus 339 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~ 415 (597)
...+..+...+...|++++|...|+++. +.+...|..+...+...|++++|.+.++++.+.. +.+...+..+...+
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~ 115 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEIDPSSADAHAALAVVFQTEMEPKLADEEYRKALASD-SRNARVLNNYGGFL 115 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHH
Confidence 4556777778888888888888888765 4567788888888889999999999998887753 34567788888888
Q ss_pred hccCcHHHHHHHHHHhHHhcCCCCC-hHHHHHHHHHHhhcCCHHHHHHHHhhCC--CCCCHHHHHHHHHHHHhcCCHHHH
Q 007573 416 GHAGKVNESMDLFELMVKVYGIIPS-SEHYTCLVDILSRAGQLEKAWQITQGMP--FEADTGVWGSLLAACVINLNVELG 492 (597)
Q Consensus 416 ~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~g~~~~a 492 (597)
...|++++|.++++++.+ .+..|+ ...+..++..|...|++++|.+.++++. .+.+...+..++..+...|++++|
T Consensus 116 ~~~g~~~~A~~~~~~~~~-~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 194 (252)
T 2ho1_A 116 YEQKRYEEAYQRLLEASQ-DTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRNQPSVALEMADLLYKEREYVPA 194 (252)
T ss_dssp HHTTCHHHHHHHHHHHTT-CTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHhHHHHHHHHHHHHHh-CccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHH
Confidence 889999999999988875 234554 6678888888999999999999988765 334577888888889999999999
Q ss_pred HHHHHHHHhcCCCCCchHHHHHHHHHhcCCcHHHHHHHHHHHhCC
Q 007573 493 ELAAKKMRELDPQNSAVYVMLSNLYAAAGMWRDVTRVRLLMKEQG 537 (597)
Q Consensus 493 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 537 (597)
...++++++..|.++..+..++.++...|++++|.+.++++.+..
T Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~ 239 (252)
T 2ho1_A 195 RQYYDLFAQGGGQNARSLLLGIRLAKVFEDRDTAASYGLQLKRLY 239 (252)
T ss_dssp HHHHHHHHTTSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHhCcCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHC
Confidence 999999999999888888899999999999999999999887754
No 44
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.58 E-value=1.7e-13 Score=138.45 Aligned_cols=337 Identities=9% Similarity=-0.020 Sum_probs=196.2
Q ss_pred HHHHHhCCChhHHHHHHHhcccC-CcchHHHHHHHHHcCCCh---HHHHHHHhhcCCCCCCchHHHHHHHHHHhcC----
Q 007573 181 LDGFMKKGEVDKARALSDYMSFK-NVVSWTVMITGYVKNERF---CEARELFYRMPDYDKNVFVVTAMITGFCKVG---- 252 (597)
Q Consensus 181 i~~~~~~g~~~~A~~~~~~m~~~-~~~~~~~ll~~~~~~g~~---~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g---- 252 (597)
...+.+.|++++|+.+|++...+ +...+..+...|...|+. ++|...|+.+.+. +...+..+...+...|
T Consensus 10 a~~~~~~g~~~~A~~~~~~aa~~g~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~--~~~A~~~Lg~~~~~~~~~~~ 87 (452)
T 3e4b_A 10 ANEALKRGDTVTAQQNYQQLAELGYSEAQVGLADIQVGTRDPAQIKQAEATYRAAADT--SPRAQARLGRLLAAKPGATE 87 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTCCTGGGTCC------------------------------CHHHHHHHHHTC--CCH
T ss_pred HHHHHhCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhC--CHHHHHHHHHHHHhCCCCCC
Confidence 33344444555555555444221 233333344444444444 4555555555442 3334444444333333
Q ss_pred -CHHHHHHHHhhcCC-CChhHHHHHHHHHHHcCChh---HHHHHHHHhHHCCCCCCHHHHHHHHHHHhccc----hhHHH
Q 007573 253 -MLENARLLFERIQP-KDCVSFNAMIAGYAQNGVAE---EALRLFSGMIKMDMQPDDATLVSVFTACSALQ----LLNEG 323 (597)
Q Consensus 253 -~~~~A~~~~~~~~~-~~~~~~~~li~~~~~~g~~~---~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~----~~~~a 323 (597)
++++|...|++..+ .+...+..|...|...+..+ ++...+......|. ......+...+...+ +.+.+
T Consensus 88 ~~~~~A~~~~~~Aa~~g~~~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g~---~~a~~~Lg~~y~~~~~~~~~~~~a 164 (452)
T 3e4b_A 88 AEHHEAESLLKKAFANGEGNTLIPLAMLYLQYPHSFPNVNAQQQISQWQAAGY---PEAGLAQVLLYRTQGTYDQHLDDV 164 (452)
T ss_dssp HHHHHHHHHHHHHHHTTCSSCHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHTC---TTHHHHHHHHHHHHTCGGGGHHHH
T ss_pred cCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCCC---HHHHHHHHHHHHcCCCcccCHHHH
Confidence 44555555554432 23345555555555544322 23333333333332 122222333333333 22333
Q ss_pred HHHHHHHHHhCCCCcccHHHHHHHHHHhcC---CHHHHHHHHhccC---CCChhhHHHHHHHHHHc----CCHHHHHHHH
Q 007573 324 RQSHVLVIRNGFEANVSVCNAVITMYSRCG---GILDSELAFRQIH---SPNLVSWNTIIAAFAQH----GHYEKALIFF 393 (597)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~----g~~~~A~~~~ 393 (597)
..++... ...++..+..|..+|.+.| +.++|...|++.. +++...+..+...|... +++++|+++|
T Consensus 165 ~~~~~~a----~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~~~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~ 240 (452)
T 3e4b_A 165 ERICKAA----LNTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRGTVTAQRVDSVARVLGDATLGTPDEKTAQALL 240 (452)
T ss_dssp HHHHHHH----TTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHTCGGGSSCCHHHHHHHH
T ss_pred HHHHHHH----HcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCCCHHHHHHHH
Confidence 3332222 2333447777888888888 8888888887765 34444446677776544 6999999999
Q ss_pred HHHHHCCCCCChHHHHHHHHH-H--hccCcHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcC-----CHHHHHHHHh
Q 007573 394 SQMGLNGFDPDGITFLSLLSA-C--GHAGKVNESMDLFELMVKVYGIIPSSEHYTCLVDILSRAG-----QLEKAWQITQ 465 (597)
Q Consensus 394 ~~m~~~g~~p~~~~~~~ll~~-~--~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g-----~~~~A~~~~~ 465 (597)
++.. .| +...+..+... + ...+++++|.+.|++..+. | ++..+..|..+|. .| ++++|.+.|+
T Consensus 241 ~~aa-~g---~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~-g---~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~ 311 (452)
T 3e4b_A 241 EKIA-PG---YPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAA-D---QPRAELLLGKLYY-EGKWVPADAKAAEAHFE 311 (452)
T ss_dssp HHHG-GG---STHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHT-T---CHHHHHHHHHHHH-HCSSSCCCHHHHHHHHH
T ss_pred HHHc-CC---CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHC-C---CHHHHHHHHHHHH-cCCCCCCCHHHHHHHHH
Confidence 9987 33 44555556555 3 5689999999999998864 4 6777888888887 55 9999999999
Q ss_pred hCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHh----cCCcHHHHHHHHHHHhCC
Q 007573 466 GMPFEADTGVWGSLLAACVI----NLNVELGELAAKKMRELDPQNSAVYVMLSNLYAA----AGMWRDVTRVRLLMKEQG 537 (597)
Q Consensus 466 ~~~~~p~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~ 537 (597)
+.. +.+...+..|...|.. ..+.++|...++++.+. .++.....|+.+|.. ..+.++|..+++...+.|
T Consensus 312 ~Aa-~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~--g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~~g 388 (452)
T 3e4b_A 312 KAV-GREVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARN--GQNSADFAIAQLFSQGKGTKPDPLNAYVFSQLAKAQD 388 (452)
T ss_dssp TTT-TTCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTT--TCTTHHHHHHHHHHSCTTBCCCHHHHHHHHHHHHTTC
T ss_pred HHh-CCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhh--ChHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHCC
Confidence 988 6678888888887766 44999999999999875 457788999999986 458999999999998877
Q ss_pred C
Q 007573 538 V 538 (597)
Q Consensus 538 ~ 538 (597)
.
T Consensus 389 ~ 389 (452)
T 3e4b_A 389 T 389 (452)
T ss_dssp C
T ss_pred C
Confidence 4
No 45
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.57 E-value=2.8e-13 Score=123.03 Aligned_cols=198 Identities=11% Similarity=-0.033 Sum_probs=156.2
Q ss_pred cccHHHHHHHHHHhcCCHHHHHHHHhccC---CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHH
Q 007573 338 NVSVCNAVITMYSRCGGILDSELAFRQIH---SPNLVSWNTIIAAFAQHGHYEKALIFFSQMGLNGFDPDGITFLSLLSA 414 (597)
Q Consensus 338 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~ 414 (597)
+..++..+...+...|++++|...++.+. +.+...|..+...+...|++++|.+.++++.+.. +.+..++..+...
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~ 85 (225)
T 2vq2_A 7 VSNIKTQLAMEYMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQESFRQALSIK-PDSAEINNNYGWF 85 (225)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCChHHHHHHHHH
Confidence 34556667777777788888887777654 4456778888888888888888888888887653 3456777888888
Q ss_pred Hhcc-CcHHHHHHHHHHhHHhcCCCCC-hHHHHHHHHHHhhcCCHHHHHHHHhhCC-CCC-CHHHHHHHHHHHHhcCCHH
Q 007573 415 CGHA-GKVNESMDLFELMVKVYGIIPS-SEHYTCLVDILSRAGQLEKAWQITQGMP-FEA-DTGVWGSLLAACVINLNVE 490 (597)
Q Consensus 415 ~~~~-g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~l~~~~~~~g~~~ 490 (597)
+... |++++|...++.+.+ .+..|+ ...+..++..+...|++++|.+.++++. ..| +...+..++..+...|+++
T Consensus 86 ~~~~~~~~~~A~~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~ 164 (225)
T 2vq2_A 86 LCGRLNRPAESMAYFDKALA-DPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQPQFPPAFKELARTKMLAGQLG 164 (225)
T ss_dssp HHTTTCCHHHHHHHHHHHHT-STTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHH
T ss_pred HHHhcCcHHHHHHHHHHHHc-CcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHcCCHH
Confidence 8888 899999998888876 234444 6677888888888999999988888765 333 5778888888888999999
Q ss_pred HHHHHHHHHHhcCC-CCCchHHHHHHHHHhcCCcHHHHHHHHHHHhCC
Q 007573 491 LGELAAKKMRELDP-QNSAVYVMLSNLYAAAGMWRDVTRVRLLMKEQG 537 (597)
Q Consensus 491 ~a~~~~~~~~~~~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 537 (597)
+|...++++++..| .++..+..++..+...|+.++|..+++.+.+..
T Consensus 165 ~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 212 (225)
T 2vq2_A 165 DADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQANF 212 (225)
T ss_dssp HHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhC
Confidence 99999999999888 888888888888889999999998888887543
No 46
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.56 E-value=7.4e-14 Score=128.65 Aligned_cols=197 Identities=13% Similarity=0.064 Sum_probs=149.8
Q ss_pred cccHHHHHHHHHHhcCCHHHHHHHHhccC---CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHH
Q 007573 338 NVSVCNAVITMYSRCGGILDSELAFRQIH---SPNLVSWNTIIAAFAQHGHYEKALIFFSQMGLNGFDPDGITFLSLLSA 414 (597)
Q Consensus 338 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~ 414 (597)
....+..+...+...|++++|...|+++. +.+...+..+...+...|++++|++.++++.+.. +.+..++..+...
T Consensus 22 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~ 100 (243)
T 2q7f_A 22 ASMTGGQQMGRGSEFGDYEKAAEAFTKAIEENKEDAIPYINFANLLSSVNELERALAFYDKALELD-SSAATAYYGAGNV 100 (243)
T ss_dssp --------------------CCTTHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CcchHHHHHHHHH
Confidence 45566677777888888888888887764 4567788888888999999999999999988753 3457778888888
Q ss_pred HhccCcHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHhhCC--CCCCHHHHHHHHHHHHhcCCHHHH
Q 007573 415 CGHAGKVNESMDLFELMVKVYGIIPSSEHYTCLVDILSRAGQLEKAWQITQGMP--FEADTGVWGSLLAACVINLNVELG 492 (597)
Q Consensus 415 ~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~g~~~~a 492 (597)
+...|++++|.+.++++.+. .+.+...+..++..+.+.|++++|.+.++++. .+.+...+..++..+...|++++|
T Consensus 101 ~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A 178 (243)
T 2q7f_A 101 YVVKEMYKEAKDMFEKALRA--GMENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNENDTEARFQFGMCLANEGMLDEA 178 (243)
T ss_dssp HHHTTCHHHHHHHHHHHHHH--TCCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHHH
T ss_pred HHHhccHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHcCCHHHH
Confidence 99999999999999998874 23457788888999999999999999998865 344677888889999999999999
Q ss_pred HHHHHHHHhcCCCCCchHHHHHHHHHhcCCcHHHHHHHHHHHhCC
Q 007573 493 ELAAKKMRELDPQNSAVYVMLSNLYAAAGMWRDVTRVRLLMKEQG 537 (597)
Q Consensus 493 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 537 (597)
+..++++++..|+++.++..++.+|...|++++|.+.++++.+..
T Consensus 179 ~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~ 223 (243)
T 2q7f_A 179 LSQFAAVTEQDPGHADAFYNAGVTYAYKENREKALEMLDKAIDIQ 223 (243)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHC
T ss_pred HHHHHHHHHhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHccC
Confidence 999999999999998899999999999999999999999987754
No 47
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.55 E-value=2.1e-12 Score=121.39 Aligned_cols=226 Identities=11% Similarity=-0.028 Sum_probs=155.6
Q ss_pred CChhHHHHHHHHHHHcCChhHHHHHHHHhHHCCCCCCHHHHHHHHHHHhc----cchhHHHHHHHHHHHHhCCCCcccHH
Q 007573 267 KDCVSFNAMIAGYAQNGVAEEALRLFSGMIKMDMQPDDATLVSVFTACSA----LQLLNEGRQSHVLVIRNGFEANVSVC 342 (597)
Q Consensus 267 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~ 342 (597)
.++.++..+...+...|++++|+..|++..+.+ +...+..+...+.. .++.++|...++...+.+
T Consensus 4 ~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~-------- 72 (273)
T 1ouv_A 4 QDPKELVGLGAKSYKEKDFTQAKKYFEKACDLK---ENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN-------- 72 (273)
T ss_dssp -CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--------
T ss_pred CChHHHHHHHHHHHhCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC--------
Confidence 356677778888888888888888888777622 22333334444444 444445544444444332
Q ss_pred HHHHHHHHhcCCHHHHHHHHhccCCCChhhHHHHHHHHHH----cCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHhc-
Q 007573 343 NAVITMYSRCGGILDSELAFRQIHSPNLVSWNTIIAAFAQ----HGHYEKALIFFSQMGLNGFDPDGITFLSLLSACGH- 417 (597)
Q Consensus 343 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~- 417 (597)
+...+..+...|.. .+++++|++.|++..+.+ +...+..+...+..
T Consensus 73 --------------------------~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~ 123 (273)
T 1ouv_A 73 --------------------------YSNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDG 123 (273)
T ss_dssp --------------------------CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHC
T ss_pred --------------------------CHHHHHHHHHHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcC
Confidence 44555666666666 777777777777777654 55666667777776
Q ss_pred ---cCcHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhh----cCCHHHHHHHHhhCCCCCCHHHHHHHHHHHHh----c
Q 007573 418 ---AGKVNESMDLFELMVKVYGIIPSSEHYTCLVDILSR----AGQLEKAWQITQGMPFEADTGVWGSLLAACVI----N 486 (597)
Q Consensus 418 ---~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~----~ 486 (597)
.+++++|.+.|++..+. + +...+..+...|.. .+++++|.+.+++.....+...+..+...+.. .
T Consensus 124 ~~~~~~~~~A~~~~~~a~~~-~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~g~~~~ 199 (273)
T 1ouv_A 124 KVVTRDFKKAVEYFTKACDL-N---DGDGCTILGSLYDAGRGTPKDLKKALASYDKACDLKDSPGCFNAGNMYHHGEGAT 199 (273)
T ss_dssp SSSCCCHHHHHHHHHHHHHT-T---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSC
T ss_pred CCcccCHHHHHHHHHHHHhc-C---cHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCC
Confidence 77778888777777663 2 45566667777776 77888888887765533456677777778877 8
Q ss_pred CCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHh----cCCcHHHHHHHHHHHhCCC
Q 007573 487 LNVELGELAAKKMRELDPQNSAVYVMLSNLYAA----AGMWRDVTRVRLLMKEQGV 538 (597)
Q Consensus 487 g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~ 538 (597)
+++++|+..++++.+.+| +..+..++.+|.. .+++++|.+.+++..+.|.
T Consensus 200 ~~~~~A~~~~~~a~~~~~--~~a~~~l~~~~~~g~~~~~~~~~A~~~~~~a~~~~~ 253 (273)
T 1ouv_A 200 KNFKEALARYSKACELEN--GGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLGA 253 (273)
T ss_dssp CCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHTC
T ss_pred ccHHHHHHHHHHHHhCCC--HHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHHcCC
Confidence 888888888888888765 6677888888888 8888888888888877663
No 48
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.54 E-value=5e-13 Score=130.79 Aligned_cols=244 Identities=12% Similarity=0.104 Sum_probs=175.6
Q ss_pred hHHHHHHHHHHHcCChhHHHHHHHHhHHCCCCC-CHHHHHHHHHHHhccch-hHHHHHHHHHHHHhCCCCcccHHHHHHH
Q 007573 270 VSFNAMIAGYAQNGVAEEALRLFSGMIKMDMQP-DDATLVSVFTACSALQL-LNEGRQSHVLVIRNGFEANVSVCNAVIT 347 (597)
Q Consensus 270 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 347 (597)
..|+.+...+...|++++|+..+++.++. .| +...|..+..++...|+ +++|...++.+++.. +.+..+|+.+..
T Consensus 98 ~a~~~lg~~~~~~g~~~~Al~~~~~al~l--~P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~-P~~~~a~~~~g~ 174 (382)
T 2h6f_A 98 DVYDYFRAVLQRDERSERAFKLTRDAIEL--NAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ-PKNYQVWHHRRV 174 (382)
T ss_dssp HHHHHHHHHHHHTCCCHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCChHHHHHHHHHHHHh--CccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHC-CCCHHHHHHHHH
Confidence 35555666666666666666666666653 33 33444555555555664 666666666666654 445667777777
Q ss_pred HHHhcCCHHHHHHHHhccC---CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHhc-cCcHHH
Q 007573 348 MYSRCGGILDSELAFRQIH---SPNLVSWNTIIAAFAQHGHYEKALIFFSQMGLNGFDPDGITFLSLLSACGH-AGKVNE 423 (597)
Q Consensus 348 ~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~-~g~~~~ 423 (597)
++.+.|++++|+..|+++. +.+...|..+..++...|++++|+..++++++.. +-+...|+.+..++.. .|..++
T Consensus 175 ~~~~~g~~~eAl~~~~kal~ldP~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~-P~~~~a~~~lg~~l~~l~~~~~e 253 (382)
T 2h6f_A 175 LVEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKED-VRNNSVWNQRYFVISNTTGYNDR 253 (382)
T ss_dssp HHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCSCSH
T ss_pred HHHHccCHHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCcchH
Confidence 8888888888888888776 5677788888888889999999999999988753 3356778888888877 566566
Q ss_pred H-----HHHHHHhHHhcCCCCC-hHHHHHHHHHHhhcC--CHHHHHHHHhhCCCCC-CHHHHHHHHHHHHhcC-------
Q 007573 424 S-----MDLFELMVKVYGIIPS-SEHYTCLVDILSRAG--QLEKAWQITQGMPFEA-DTGVWGSLLAACVINL------- 487 (597)
Q Consensus 424 a-----~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g--~~~~A~~~~~~~~~~p-~~~~~~~l~~~~~~~g------- 487 (597)
| .+.++++++. .|+ ...|..+..+|...| ++++|.+.+.++...| +...+..++..+...|
T Consensus 254 A~~~~el~~~~~Al~l---~P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~~~~p~~~~al~~La~~~~~~~~~~~~~~ 330 (382)
T 2h6f_A 254 AVLEREVQYTLEMIKL---VPHNESAWNYLKGILQDRGLSKYPNLLNQLLDLQPSHSSPYLIAFLVDIYEDMLENQCDNK 330 (382)
T ss_dssp HHHHHHHHHHHHHHHH---STTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHHTTTCCCHHHHHHHHHHHHHHHHTTCSSH
T ss_pred HHHHHHHHHHHHHHHH---CCCCHHHHHHHHHHHHccCccchHHHHHHHHHhccCCCCHHHHHHHHHHHHHHhcccccch
Confidence 6 4777777753 344 678888888888888 6888888887775444 4567888888887764
Q ss_pred -C-HHHHHHHHHHH-HhcCCCCCchHHHHHHHHHhc
Q 007573 488 -N-VELGELAAKKM-RELDPQNSAVYVMLSNLYAAA 520 (597)
Q Consensus 488 -~-~~~a~~~~~~~-~~~~p~~~~~~~~l~~~~~~~ 520 (597)
+ .++|+.+++++ .+++|.....|..++..+..+
T Consensus 331 ~~~~~~A~~~~~~l~~~~DP~r~~~w~~~~~~l~~~ 366 (382)
T 2h6f_A 331 EDILNKALELCEILAKEKDTIRKEYWRYIGRSLQSK 366 (382)
T ss_dssp HHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHH
Confidence 2 58999999999 899999888888777766543
No 49
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.54 E-value=1.1e-13 Score=127.43 Aligned_cols=213 Identities=12% Similarity=0.051 Sum_probs=143.4
Q ss_pred ChhHHHHHHHHHHHcCChhHHHHHHHHhHHCCCCCCHHHHHHHHHHHhccchhHHHHHHHHHHHHhCCCCcccHHHHHHH
Q 007573 268 DCVSFNAMIAGYAQNGVAEEALRLFSGMIKMDMQPDDATLVSVFTACSALQLLNEGRQSHVLVIRNGFEANVSVCNAVIT 347 (597)
Q Consensus 268 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 347 (597)
....|..+...+...|++++|+..|+++.+.. | .+...+..+..
T Consensus 22 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~--~----------------------------------~~~~~~~~la~ 65 (243)
T 2q7f_A 22 ASMTGGQQMGRGSEFGDYEKAAEAFTKAIEEN--K----------------------------------EDAIPYINFAN 65 (243)
T ss_dssp --------------------CCTTHHHHHTTC--T----------------------------------TCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhC--c----------------------------------ccHHHHHHHHH
Confidence 33466667777777777777777777776532 2 22333444455
Q ss_pred HHHhcCCHHHHHHHHhccC---CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHhccCcHHHH
Q 007573 348 MYSRCGGILDSELAFRQIH---SPNLVSWNTIIAAFAQHGHYEKALIFFSQMGLNGFDPDGITFLSLLSACGHAGKVNES 424 (597)
Q Consensus 348 ~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a 424 (597)
.|...|++++|...++++. +.+...+..+...+...|++++|++.++++.+.. +.+...+..+...+...|++++|
T Consensus 66 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A 144 (243)
T 2q7f_A 66 LLSSVNELERALAFYDKALELDSSAATAYYGAGNVYVVKEMYKEAKDMFEKALRAG-MENGDLFYMLGTVLVKLEQPKLA 144 (243)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-CCSHHHHHHHHHHHHHTSCHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccHHHH
Confidence 5555555555555555443 3456677778888888889999999888887753 44567788888888899999999
Q ss_pred HHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHhhCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 007573 425 MDLFELMVKVYGIIPSSEHYTCLVDILSRAGQLEKAWQITQGMP--FEADTGVWGSLLAACVINLNVELGELAAKKMREL 502 (597)
Q Consensus 425 ~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 502 (597)
...++++.+. .+.+...+..++..+.+.|++++|.+.++++. .+.+..++..+...+...|++++|...++++++.
T Consensus 145 ~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 222 (243)
T 2q7f_A 145 LPYLQRAVEL--NENDTEARFQFGMCLANEGMLDEALSQFAAVTEQDPGHADAFYNAGVTYAYKENREKALEMLDKAIDI 222 (243)
T ss_dssp HHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHh--CCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHcc
Confidence 9999988764 23457788889999999999999999998765 3445778999999999999999999999999999
Q ss_pred CCCCCchHHHHHHHHHh
Q 007573 503 DPQNSAVYVMLSNLYAA 519 (597)
Q Consensus 503 ~p~~~~~~~~l~~~~~~ 519 (597)
+|+++.++..+..+...
T Consensus 223 ~p~~~~~~~~~~~l~~~ 239 (243)
T 2q7f_A 223 QPDHMLALHAKKLLGHH 239 (243)
T ss_dssp CTTCHHHHHHHTC----
T ss_pred CcchHHHHHHHHHHHhh
Confidence 99998877766655443
No 50
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.54 E-value=1.1e-12 Score=123.19 Aligned_cols=241 Identities=12% Similarity=0.052 Sum_probs=165.0
Q ss_pred chHHHHHHHHHcCCChHHHHHHHhhcCCCCCC-chHHHHHHHHHHhcCCHHHHHHHHhhcCC--CCh----hHHHHHHHH
Q 007573 206 VSWTVMITGYVKNERFCEARELFYRMPDYDKN-VFVVTAMITGFCKVGMLENARLLFERIQP--KDC----VSFNAMIAG 278 (597)
Q Consensus 206 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~----~~~~~li~~ 278 (597)
..+......+...|++++|...++.+.+..|+ ..++..+...|.+.|++++|...+++... .+. .+|..+...
T Consensus 4 ~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~ 83 (272)
T 3u4t_A 4 DVEFRYADFLFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKI 83 (272)
T ss_dssp -CHHHHHHHHHTTTCHHHHHHHHHHHHHTTCCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHH
Confidence 34455666777778888888888777776654 34777777788888888888888776543 222 247888888
Q ss_pred HHHcCChhHHHHHHHHhHHCCCCCCHHHHHHHHHHHhccchhHHHHHHHHHHHHhCCCCcccHHHHHHHHHHhcCCHHHH
Q 007573 279 YAQNGVAEEALRLFSGMIKMDMQPDDATLVSVFTACSALQLLNEGRQSHVLVIRNGFEANVSVCNAVITMYSRCGGILDS 358 (597)
Q Consensus 279 ~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 358 (597)
+...|++++|+..|++..+.. |+.. .++..+...|...|++++|
T Consensus 84 ~~~~~~~~~A~~~~~~a~~~~--~~~~----------------------------------~~~~~l~~~~~~~~~~~~A 127 (272)
T 3u4t_A 84 LMKKGQDSLAIQQYQAAVDRD--TTRL----------------------------------DMYGQIGSYFYNKGNFPLA 127 (272)
T ss_dssp HHHTTCHHHHHHHHHHHHHHS--TTCT----------------------------------HHHHHHHHHHHHTTCHHHH
T ss_pred HHHcccHHHHHHHHHHHHhcC--cccH----------------------------------HHHHHHHHHHHHccCHHHH
Confidence 888999999999988887742 3211 1234455667777778888
Q ss_pred HHHHhccC---CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHhccCc---HHHHHHHHHHhH
Q 007573 359 ELAFRQIH---SPNLVSWNTIIAAFAQHGHYEKALIFFSQMGLNGFDPDGITFLSLLSACGHAGK---VNESMDLFELMV 432 (597)
Q Consensus 359 ~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~---~~~a~~~~~~~~ 432 (597)
...+++.. +.+...|..+...+...+++++|++.|+++.+.. +.+...+..+..++...|+ .++|...++++.
T Consensus 128 ~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~ 206 (272)
T 3u4t_A 128 IQYMEKQIRPTTTDPKVFYELGQAYYYNKEYVKADSSFVKVLELK-PNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLI 206 (272)
T ss_dssp HHHHGGGCCSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHH
T ss_pred HHHHHHHhhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHH
Confidence 88777766 3455667666634444568999999998888752 3335667777777777777 777888888877
Q ss_pred HhcCCCCCh------HHHHHHHHHHhhcCCHHHHHHHHhhCC-CCC-CHHHHHHHHHHH
Q 007573 433 KVYGIIPSS------EHYTCLVDILSRAGQLEKAWQITQGMP-FEA-DTGVWGSLLAAC 483 (597)
Q Consensus 433 ~~~~~~p~~------~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~l~~~~ 483 (597)
+...-.|+. ..|..+...|...|++++|.+.+++.. ..| +...+..+....
T Consensus 207 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~l~~~~ 265 (272)
T 3u4t_A 207 EVCAPGGAKYKDELIEANEYIAYYYTINRDKVKADAAWKNILALDPTNKKAIDGLKMKL 265 (272)
T ss_dssp HHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHC---
T ss_pred HHHhcccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCccHHHHHHHhhhhh
Confidence 654333442 577788888999999999999998875 445 444555544443
No 51
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.54 E-value=9.5e-13 Score=121.99 Aligned_cols=205 Identities=13% Similarity=0.087 Sum_probs=154.5
Q ss_pred hhHHHHHHHHHHHcCChhHHHHHHHHhHHCCCCCCHHHHHHHHHHHhccchhHHHHHHHHHHHHhCCCCcccHHHHHHHH
Q 007573 269 CVSFNAMIAGYAQNGVAEEALRLFSGMIKMDMQPDDATLVSVFTACSALQLLNEGRQSHVLVIRNGFEANVSVCNAVITM 348 (597)
Q Consensus 269 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 348 (597)
...|..+...+...|++++|+..|+++.+.. +.+. ..+..+...
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~-----------------------------------~~~~~la~~ 80 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEID-PSSA-----------------------------------DAHAALAVV 80 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHC-TTCH-----------------------------------HHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-CChH-----------------------------------HHHHHHHHH
Confidence 4567777788888888888888888777642 1123 334444555
Q ss_pred HHhcCCHHHHHHHHhccC---CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC-hHHHHHHHHHHhccCcHHHH
Q 007573 349 YSRCGGILDSELAFRQIH---SPNLVSWNTIIAAFAQHGHYEKALIFFSQMGLNGFDPD-GITFLSLLSACGHAGKVNES 424 (597)
Q Consensus 349 ~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~g~~~~a 424 (597)
|...|++++|...++++. +.+...|..+...+...|++++|+++++++.+.+..|+ ...+..+...+...|++++|
T Consensus 81 ~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 160 (252)
T 2ho1_A 81 FQTEMEPKLADEEYRKALASDSRNARVLNNYGGFLYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQA 160 (252)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHH
Confidence 555556666655555443 34566777788888889999999999998877334554 56777788888899999999
Q ss_pred HHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHhhCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 007573 425 MDLFELMVKVYGIIPSSEHYTCLVDILSRAGQLEKAWQITQGMP--FEADTGVWGSLLAACVINLNVELGELAAKKMREL 502 (597)
Q Consensus 425 ~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 502 (597)
.+.++++.+.. +.+...+..++..|...|++++|.+.++++. .+.+...+..+...+...|+.++|...++++++.
T Consensus 161 ~~~~~~~~~~~--~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~ 238 (252)
T 2ho1_A 161 KEYFEKSLRLN--RNQPSVALEMADLLYKEREYVPARQYYDLFAQGGGQNARSLLLGIRLAKVFEDRDTAASYGLQLKRL 238 (252)
T ss_dssp HHHHHHHHHHC--SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcC--cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 99999887642 3347788889999999999999999998865 3345678888888899999999999999999999
Q ss_pred CCCCCchHH
Q 007573 503 DPQNSAVYV 511 (597)
Q Consensus 503 ~p~~~~~~~ 511 (597)
.|+++....
T Consensus 239 ~p~~~~~~~ 247 (252)
T 2ho1_A 239 YPGSLEYQE 247 (252)
T ss_dssp CTTSHHHHH
T ss_pred CCCCHHHHH
Confidence 999876543
No 52
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.53 E-value=8.3e-13 Score=115.86 Aligned_cols=166 Identities=14% Similarity=0.057 Sum_probs=139.7
Q ss_pred ChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChHHHHHHH
Q 007573 369 NLVSWNTIIAAFAQHGHYEKALIFFSQMGLNGFDPDGITFLSLLSACGHAGKVNESMDLFELMVKVYGIIPSSEHYTCLV 448 (597)
Q Consensus 369 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~ 448 (597)
+...|..+...|...|++++|++.|++..+.. +-+..++..+..++.+.|++++|...+...... .+.+...+..+.
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~~ 80 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKAD-PNNVETLLKLGKTYMDIGLPNDAIESLKKFVVL--DTTSAEAYYILG 80 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CchhHHHHHHHH
Confidence 55678888888888999999999998888753 334667888888888999999999998888764 233466777788
Q ss_pred HHHhhcCCHHHHHHHHhhCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCcHHH
Q 007573 449 DILSRAGQLEKAWQITQGMP--FEADTGVWGSLLAACVINLNVELGELAAKKMRELDPQNSAVYVMLSNLYAAAGMWRDV 526 (597)
Q Consensus 449 ~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A 526 (597)
..+...++++.|.+.+.+.. .+.+...+..++..+...|++++|+..++++++.+|.++.++..++.+|.+.|++++|
T Consensus 81 ~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~A 160 (184)
T 3vtx_A 81 SANFMIDEKQAAIDALQRAIALNTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKGLRDEA 160 (184)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhhhHHHHHHHHHHHCCCHHHH
Confidence 88889999999999888765 3345778889999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhCC
Q 007573 527 TRVRLLMKEQG 537 (597)
Q Consensus 527 ~~~~~~~~~~~ 537 (597)
++.+++..+..
T Consensus 161 ~~~~~~al~~~ 171 (184)
T 3vtx_A 161 VKYFKKALEKE 171 (184)
T ss_dssp HHHHHHHHHTT
T ss_pred HHHHHHHHhCC
Confidence 99999988754
No 53
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.53 E-value=6.1e-13 Score=120.08 Aligned_cols=63 Identities=16% Similarity=0.095 Sum_probs=36.4
Q ss_pred CCchHHHHHHHHHHhcCCHHHHHHHHhhcCC---CChhHHHHHHHHHHHcCChhHHHHHHHHhHHC
Q 007573 236 KNVFVVTAMITGFCKVGMLENARLLFERIQP---KDCVSFNAMIAGYAQNGVAEEALRLFSGMIKM 298 (597)
Q Consensus 236 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 298 (597)
++...+..+...+.+.|++++|...|++..+ .+...|..+...+.+.|++++|+..|++..+.
T Consensus 3 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~ 68 (217)
T 2pl2_A 3 TAEQNPLRLGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVAR 68 (217)
T ss_dssp -CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 3445555566666666666666666665432 34455666666666666666666666665553
No 54
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.53 E-value=2.9e-12 Score=120.36 Aligned_cols=226 Identities=12% Similarity=0.005 Sum_probs=173.0
Q ss_pred CchHHHHHHHHHHhcCCHHHHHHHHhhcCC-CChhHHHHHHHHHHH----cCChhHHHHHHHHhHHCCCCCCHHHHHHHH
Q 007573 237 NVFVVTAMITGFCKVGMLENARLLFERIQP-KDCVSFNAMIAGYAQ----NGVAEEALRLFSGMIKMDMQPDDATLVSVF 311 (597)
Q Consensus 237 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll 311 (597)
+..++..+...|...|++++|...|++..+ .+..++..+...|.. .+++++|+..|++..+.+ +...+..+.
T Consensus 5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg 81 (273)
T 1ouv_A 5 DPKELVGLGAKSYKEKDFTQAKKYFEKACDLKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCHLLG 81 (273)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHH
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHHHHHHHH
Confidence 456778889999999999999999988665 466789999999999 999999999999999875 555555555
Q ss_pred HHHhc----cchhHHHHHHHHHHHHhCCCCcccHHHHHHHHHHhcCCHHHHHHHHhccCCCChhhHHHHHHHHHH----c
Q 007573 312 TACSA----LQLLNEGRQSHVLVIRNGFEANVSVCNAVITMYSRCGGILDSELAFRQIHSPNLVSWNTIIAAFAQ----H 383 (597)
Q Consensus 312 ~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~----~ 383 (597)
..+.. .++.++|...++...+.+ +..++..+...|.. .
T Consensus 82 ~~~~~g~~~~~~~~~A~~~~~~a~~~~----------------------------------~~~a~~~lg~~~~~~~~~~ 127 (273)
T 1ouv_A 82 NLYYSGQGVSQNTNKALQYYSKACDLK----------------------------------YAEGCASLGGIYHDGKVVT 127 (273)
T ss_dssp HHHHHTSSSCCCHHHHHHHHHHHHHTT----------------------------------CHHHHHHHHHHHHHCSSSC
T ss_pred HHHhCCCCcccCHHHHHHHHHHHHHcC----------------------------------CccHHHHHHHHHHcCCCcc
Confidence 55555 666666666666555433 44455556666666 7
Q ss_pred CCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHhc----cCcHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhh----cC
Q 007573 384 GHYEKALIFFSQMGLNGFDPDGITFLSLLSACGH----AGKVNESMDLFELMVKVYGIIPSSEHYTCLVDILSR----AG 455 (597)
Q Consensus 384 g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~----~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g 455 (597)
+++++|++.|++..+.+ +...+..+...+.. .+++++|...|++..+. + +...+..+..+|.. .+
T Consensus 128 ~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~-~---~~~a~~~lg~~~~~g~~~~~ 200 (273)
T 1ouv_A 128 RDFKKAVEYFTKACDLN---DGDGCTILGSLYDAGRGTPKDLKKALASYDKACDL-K---DSPGCFNAGNMYHHGEGATK 200 (273)
T ss_dssp CCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT-T---CHHHHHHHHHHHHHTCSSCC
T ss_pred cCHHHHHHHHHHHHhcC---cHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC-C---CHHHHHHHHHHHHcCCCCCc
Confidence 78888888888877755 45566666677766 78888888888887764 2 45677778888888 88
Q ss_pred CHHHHHHHHhhCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhcCCCC
Q 007573 456 QLEKAWQITQGMPFEADTGVWGSLLAACVI----NLNVELGELAAKKMRELDPQN 506 (597)
Q Consensus 456 ~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~p~~ 506 (597)
++++|.+.+++.....+...+..+...+.. .+++++|+..++++.+.+|++
T Consensus 201 ~~~~A~~~~~~a~~~~~~~a~~~l~~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~ 255 (273)
T 1ouv_A 201 NFKEALARYSKACELENGGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLGAKG 255 (273)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHTCHH
T ss_pred cHHHHHHHHHHHHhCCCHHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHHcCCHH
Confidence 999999888876522346777888888888 899999999999999998864
No 55
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.52 E-value=2.3e-12 Score=116.85 Aligned_cols=208 Identities=13% Similarity=0.004 Sum_probs=154.4
Q ss_pred ChhHHHHHHHHHHHcCChhHHHHHHHHhHHCCCCCCHHHHHHHHHHHhccchhHHHHHHHHHHHHhCCCCcccHHHHHHH
Q 007573 268 DCVSFNAMIAGYAQNGVAEEALRLFSGMIKMDMQPDDATLVSVFTACSALQLLNEGRQSHVLVIRNGFEANVSVCNAVIT 347 (597)
Q Consensus 268 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 347 (597)
+...|..+...+...|++++|+..|+++.+.. | .+...+..+..
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--~----------------------------------~~~~~~~~l~~ 50 (225)
T 2vq2_A 7 VSNIKTQLAMEYMRGQDYRQATASIEDALKSD--P----------------------------------KNELAWLVRAE 50 (225)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--T----------------------------------TCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC--c----------------------------------cchHHHHHHHH
Confidence 44567777777777777777777777766542 2 22334444555
Q ss_pred HHHhcCCHHHHHHHHhccC---CCChhhHHHHHHHHHHc-CCHHHHHHHHHHHHHCCCCCC-hHHHHHHHHHHhccCcHH
Q 007573 348 MYSRCGGILDSELAFRQIH---SPNLVSWNTIIAAFAQH-GHYEKALIFFSQMGLNGFDPD-GITFLSLLSACGHAGKVN 422 (597)
Q Consensus 348 ~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~-g~~~~A~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~g~~~ 422 (597)
.|...|++++|...++++. +.+..++..+...+... |++++|+..++++.+.+..|+ ...+..+..++...|+++
T Consensus 51 ~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 130 (225)
T 2vq2_A 51 IYQYLKVNDKAQESFRQALSIKPDSAEINNNYGWFLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFG 130 (225)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHH
Confidence 5555666666666665543 34566777888888888 999999999999887333444 567788888889999999
Q ss_pred HHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHhhCC--CC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 007573 423 ESMDLFELMVKVYGIIPSSEHYTCLVDILSRAGQLEKAWQITQGMP--FE-ADTGVWGSLLAACVINLNVELGELAAKKM 499 (597)
Q Consensus 423 ~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~-p~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 499 (597)
+|...++.+.+. .+.+...+..++..+.+.|++++|.+.++++. .+ .+...+..+...+...|+.+.|..+++.+
T Consensus 131 ~A~~~~~~~~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~ 208 (225)
T 2vq2_A 131 LAEAYLKRSLAA--QPQFPPAFKELARTKMLAGQLGDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQL 208 (225)
T ss_dssp HHHHHHHHHHHH--STTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh--CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHH
Confidence 999999988764 23347788889999999999999999998865 33 45667777777889999999999999999
Q ss_pred HhcCCCCCchHHHH
Q 007573 500 RELDPQNSAVYVML 513 (597)
Q Consensus 500 ~~~~p~~~~~~~~l 513 (597)
.+..|+++.....+
T Consensus 209 ~~~~p~~~~~~~~l 222 (225)
T 2vq2_A 209 QANFPYSEELQTVL 222 (225)
T ss_dssp HHHCTTCHHHHHHH
T ss_pred HHhCCCCHHHHHHh
Confidence 99999987765443
No 56
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.51 E-value=1.7e-13 Score=137.32 Aligned_cols=197 Identities=10% Similarity=0.013 Sum_probs=139.9
Q ss_pred cHHHHHHHHHHhcCCHHHHHHHHhccCC---------CChhhHHHHHHHHHHcCC-----------------HHHHHHHH
Q 007573 340 SVCNAVITMYSRCGGILDSELAFRQIHS---------PNLVSWNTIIAAFAQHGH-----------------YEKALIFF 393 (597)
Q Consensus 340 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~---------~~~~~~~~li~~~~~~g~-----------------~~~A~~~~ 393 (597)
.++..+...|...|++++|...+++... ....++..+...|...|+ +++|++.+
T Consensus 127 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~ 206 (411)
T 4a1s_A 127 KSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFY 206 (411)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHH
Confidence 3455566666666666666666655431 123366667777777788 78888777
Q ss_pred HHHHHC----CCCC-ChHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCC----hHHHHHHHHHHhhcCCHHHHHHHH
Q 007573 394 SQMGLN----GFDP-DGITFLSLLSACGHAGKVNESMDLFELMVKVYGIIPS----SEHYTCLVDILSRAGQLEKAWQIT 464 (597)
Q Consensus 394 ~~m~~~----g~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~ 464 (597)
++..+. +-.+ ...++..+...+...|++++|...+++..+...-.++ ...+..+...|...|++++|.+.+
T Consensus 207 ~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 286 (411)
T 4a1s_A 207 QENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHY 286 (411)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHH
Confidence 775432 1111 1346777778888889999999888887654221122 236778888899999999999988
Q ss_pred hhCC-C---CCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC------CchHHHHHHHHHhcCCcHHHHHHH
Q 007573 465 QGMP-F---EAD----TGVWGSLLAACVINLNVELGELAAKKMRELDPQN------SAVYVMLSNLYAAAGMWRDVTRVR 530 (597)
Q Consensus 465 ~~~~-~---~p~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~------~~~~~~l~~~~~~~g~~~~A~~~~ 530 (597)
++.. . ..+ ..++..+...+...|++++|...++++++..+.. ..++..++.+|...|++++|.+.+
T Consensus 287 ~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 366 (411)
T 4a1s_A 287 KRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERALKYA 366 (411)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHHHHHH
Confidence 7754 1 111 4577888888999999999999999998875432 457888999999999999999999
Q ss_pred HHHHhC
Q 007573 531 LLMKEQ 536 (597)
Q Consensus 531 ~~~~~~ 536 (597)
++..+.
T Consensus 367 ~~al~~ 372 (411)
T 4a1s_A 367 EQHLQL 372 (411)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 998763
No 57
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.50 E-value=4.8e-13 Score=133.54 Aligned_cols=267 Identities=14% Similarity=0.055 Sum_probs=142.6
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHhhcCC---CC----hhHHHHHHHHHHHcCChhHHHHHHHHhHHC----CCCCC-HHH
Q 007573 239 FVVTAMITGFCKVGMLENARLLFERIQP---KD----CVSFNAMIAGYAQNGVAEEALRLFSGMIKM----DMQPD-DAT 306 (597)
Q Consensus 239 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~p~-~~~ 306 (597)
..+......+.+.|++++|...|++... .+ ..+|..+...+...|++++|+..+++.... +..|. ...
T Consensus 10 ~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 89 (406)
T 3sf4_A 10 LELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKA 89 (406)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHHHHH
Confidence 3445556666677777777777765432 22 235666666677777777777776665432 11111 122
Q ss_pred HHHHHHHHhccchhHHHHHHHHHHHHhCCCCcccHHHHHHHHHHhcCCHHHHHHHHhccCCCC----hhhHHHHHHHHHH
Q 007573 307 LVSVFTACSALQLLNEGRQSHVLVIRNGFEANVSVCNAVITMYSRCGGILDSELAFRQIHSPN----LVSWNTIIAAFAQ 382 (597)
Q Consensus 307 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~----~~~~~~li~~~~~ 382 (597)
+..+...+...|++++|...+..+.+.... .++ ..++..+...|..
T Consensus 90 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~------------------------------~~~~~~~~~~~~~l~~~~~~ 139 (406)
T 3sf4_A 90 SGNLGNTLKVLGNFDEAIVCCQRHLDISRE------------------------------LNDKVGEARALYNLGNVYHA 139 (406)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHH------------------------------HTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHh------------------------------cccccchHHHHHHHHHHHHH
Confidence 333333444444444444444443322100 011 2245555555555
Q ss_pred cCC--------------------HHHHHHHHHHHHHC----CCCCC-hHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCC
Q 007573 383 HGH--------------------YEKALIFFSQMGLN----GFDPD-GITFLSLLSACGHAGKVNESMDLFELMVKVYGI 437 (597)
Q Consensus 383 ~g~--------------------~~~A~~~~~~m~~~----g~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~ 437 (597)
.|+ +++|++.+.+.... +..|. ..++..+...+...|++++|...+++..+...-
T Consensus 140 ~g~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 219 (406)
T 3sf4_A 140 KGKSFGCPGPQDVGEFPEEVRDALQAAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKE 219 (406)
T ss_dssp HHHTCC-------CCCCHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHH
T ss_pred cCCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHh
Confidence 565 66666665554321 11111 234555556666666666666666665543211
Q ss_pred CCC----hHHHHHHHHHHhhcCCHHHHHHHHhhCC----CCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 007573 438 IPS----SEHYTCLVDILSRAGQLEKAWQITQGMP----FEAD----TGVWGSLLAACVINLNVELGELAAKKMRELDPQ 505 (597)
Q Consensus 438 ~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~----~~p~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~ 505 (597)
.++ ...+..+...|...|++++|...+++.. ..++ ..++..+...+...|++++|...++++++..+.
T Consensus 220 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~ 299 (406)
T 3sf4_A 220 FGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQE 299 (406)
T ss_dssp TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred cCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHh
Confidence 122 2255666666667777777766665543 1111 335566666666777777777777776665332
Q ss_pred C------CchHHHHHHHHHhcCCcHHHHHHHHHHHh
Q 007573 506 N------SAVYVMLSNLYAAAGMWRDVTRVRLLMKE 535 (597)
Q Consensus 506 ~------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 535 (597)
. ..++..++.+|...|++++|.+.+++..+
T Consensus 300 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 335 (406)
T 3sf4_A 300 LNDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLE 335 (406)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred cCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 2 34566667777777777777777666554
No 58
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.50 E-value=1.4e-12 Score=127.59 Aligned_cols=226 Identities=10% Similarity=0.020 Sum_probs=192.0
Q ss_pred HHHHHHHHHHhccchhHHHHHHHHHHHHhCCCCcccHHHHHHHHHHhcCC-HHHHHHHHhccC---CCChhhHHHHHHHH
Q 007573 305 ATLVSVFTACSALQLLNEGRQSHVLVIRNGFEANVSVCNAVITMYSRCGG-ILDSELAFRQIH---SPNLVSWNTIIAAF 380 (597)
Q Consensus 305 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-~~~A~~~~~~~~---~~~~~~~~~li~~~ 380 (597)
..+..+...+...|+.++|...+..+++.. +.+..+|+.+..++...|+ +++|+..|+++. +.+...|+.+...+
T Consensus 98 ~a~~~lg~~~~~~g~~~~Al~~~~~al~l~-P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~~~~a~~~~g~~~ 176 (382)
T 2h6f_A 98 DVYDYFRAVLQRDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVLV 176 (382)
T ss_dssp HHHHHHHHHHHHTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCChHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
Confidence 345566677788899999999999999886 5677889999999999997 999999999887 56778999999999
Q ss_pred HHcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhh-cCCHHH
Q 007573 381 AQHGHYEKALIFFSQMGLNGFDPDGITFLSLLSACGHAGKVNESMDLFELMVKVYGIIPSSEHYTCLVDILSR-AGQLEK 459 (597)
Q Consensus 381 ~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~-~g~~~~ 459 (597)
...|++++|+..|+++++.. +-+...|..+..++...|++++|+..++++++. -+-+...|+.+..+|.+ .|..++
T Consensus 177 ~~~g~~~eAl~~~~kal~ld-P~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l--~P~~~~a~~~lg~~l~~l~~~~~e 253 (382)
T 2h6f_A 177 EWLRDPSQELEFIADILNQD-AKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKE--DVRNNSVWNQRYFVISNTTGYNDR 253 (382)
T ss_dssp HHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCSCSH
T ss_pred HHccCHHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhcCcchH
Confidence 99999999999999999863 345778999999999999999999999999874 22357889999999999 666577
Q ss_pred H-----HHHHhhCC-CCC-CHHHHHHHHHHHHhcC--CHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcC---------
Q 007573 460 A-----WQITQGMP-FEA-DTGVWGSLLAACVINL--NVELGELAAKKMRELDPQNSAVYVMLSNLYAAAG--------- 521 (597)
Q Consensus 460 A-----~~~~~~~~-~~p-~~~~~~~l~~~~~~~g--~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g--------- 521 (597)
| ++.+++.. ..| +...|..+...+...| ++++|+..+.++ +.+|+++.++..++++|.+.|
T Consensus 254 A~~~~el~~~~~Al~l~P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~~p~~~~al~~La~~~~~~~~~~~~~~~~ 332 (382)
T 2h6f_A 254 AVLEREVQYTLEMIKLVPHNESAWNYLKGILQDRGLSKYPNLLNQLLDL-QPSHSSPYLIAFLVDIYEDMLENQCDNKED 332 (382)
T ss_dssp HHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TTTCCCHHHHHHHHHHHHHHHHTTCSSHHH
T ss_pred HHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHccCccchHHHHHHHHHh-ccCCCCHHHHHHHHHHHHHHhcccccchHH
Confidence 7 47777654 455 5678999999998888 689999999998 889999999999999999975
Q ss_pred CcHHHHHHHHHH-Hh
Q 007573 522 MWRDVTRVRLLM-KE 535 (597)
Q Consensus 522 ~~~~A~~~~~~~-~~ 535 (597)
.+++|+++++++ .+
T Consensus 333 ~~~~A~~~~~~l~~~ 347 (382)
T 2h6f_A 333 ILNKALELCEILAKE 347 (382)
T ss_dssp HHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHH
Confidence 358999999997 44
No 59
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.49 E-value=6.5e-13 Score=128.65 Aligned_cols=264 Identities=13% Similarity=0.059 Sum_probs=172.3
Q ss_pred HHHHHHHhcCCHHHHHHHHhhcCC---CC----hhHHHHHHHHHHHcCChhHHHHHHHHhHHCCCCCCHHHHHHHHHHHh
Q 007573 243 AMITGFCKVGMLENARLLFERIQP---KD----CVSFNAMIAGYAQNGVAEEALRLFSGMIKMDMQPDDATLVSVFTACS 315 (597)
Q Consensus 243 ~l~~~~~~~g~~~~A~~~~~~~~~---~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~ 315 (597)
.....+...|++++|...|+++.+ .+ ...+..+...+...|++++|+..+++.....
T Consensus 10 ~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~---------------- 73 (338)
T 3ro2_A 10 LEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLA---------------- 73 (338)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH----------------
T ss_pred HHHHHHHHhccHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh----------------
Confidence 334455555666666665555321 22 2345555555555666666665555543310
Q ss_pred ccchhHHHHHHHHHHHHhCCC-CcccHHHHHHHHHHhcCCHHHHHHHHhccC-----CCC----hhhHHHHHHHHHHcCC
Q 007573 316 ALQLLNEGRQSHVLVIRNGFE-ANVSVCNAVITMYSRCGGILDSELAFRQIH-----SPN----LVSWNTIIAAFAQHGH 385 (597)
Q Consensus 316 ~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-----~~~----~~~~~~li~~~~~~g~ 385 (597)
.+.+.. ....++..+...|...|++++|...+++.. .++ ..++..+...+...|+
T Consensus 74 ---------------~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 138 (338)
T 3ro2_A 74 ---------------RTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGK 138 (338)
T ss_dssp ---------------HHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred ---------------hcccccHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCc
Confidence 000111 113345556666666677777666666543 122 2366667777777777
Q ss_pred --------------------HHHHHHHHHHHHHC----CCCCC-hHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCC
Q 007573 386 --------------------YEKALIFFSQMGLN----GFDPD-GITFLSLLSACGHAGKVNESMDLFELMVKVYGIIPS 440 (597)
Q Consensus 386 --------------------~~~A~~~~~~m~~~----g~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~ 440 (597)
+++|.+.+++.... +..|. ..++..+...+...|++++|...+++..+...-.++
T Consensus 139 ~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~ 218 (338)
T 3ro2_A 139 SFGCPGPQDTGEFPEDVRNALQAAVDLYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGD 218 (338)
T ss_dssp TSSSSSCC----CCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTC
T ss_pred ccccchhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCC
Confidence 88888887776432 11111 346777778888899999999998887654221122
Q ss_pred ----hHHHHHHHHHHhhcCCHHHHHHHHhhCC----CCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC--
Q 007573 441 ----SEHYTCLVDILSRAGQLEKAWQITQGMP----FEAD----TGVWGSLLAACVINLNVELGELAAKKMRELDPQN-- 506 (597)
Q Consensus 441 ----~~~~~~l~~~~~~~g~~~~A~~~~~~~~----~~p~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~-- 506 (597)
...+..+...|...|++++|.+.+++.. ..++ ..++..+...+...|++++|...++++++..+..
T Consensus 219 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~ 298 (338)
T 3ro2_A 219 KAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKD 298 (338)
T ss_dssp HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTC
T ss_pred hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCC
Confidence 3377888899999999999999988754 1122 4577888888999999999999999999875432
Q ss_pred ----CchHHHHHHHHHhcCCcHHHHHHHHHHHhCC
Q 007573 507 ----SAVYVMLSNLYAAAGMWRDVTRVRLLMKEQG 537 (597)
Q Consensus 507 ----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 537 (597)
..++..++.+|...|++++|.+.+++..+..
T Consensus 299 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~ 333 (338)
T 3ro2_A 299 RIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEIS 333 (338)
T ss_dssp HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHC-
T ss_pred cHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHH
Confidence 4478899999999999999999999987643
No 60
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.49 E-value=2.8e-13 Score=137.73 Aligned_cols=209 Identities=10% Similarity=0.024 Sum_probs=175.0
Q ss_pred hHHHHHHHHHHHHhCCCCcccHHHHHHHHHHhcCCH-HHHHHHHhccC---CCChhhHHHHHHHHHHcCCHHHHHHHHHH
Q 007573 320 LNEGRQSHVLVIRNGFEANVSVCNAVITMYSRCGGI-LDSELAFRQIH---SPNLVSWNTIIAAFAQHGHYEKALIFFSQ 395 (597)
Q Consensus 320 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~-~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 395 (597)
++.+...+....+.. +.+...+..+...|...|++ ++|+..|++.. +.+...|..+...|...|++++|++.|++
T Consensus 84 ~~~al~~l~~~~~~~-~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~ 162 (474)
T 4abn_A 84 MEKTLQQMEEVLGSA-QVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWKKGDVTSAHTCFSG 162 (474)
T ss_dssp HHHHHHHHHHHHTTC-CCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccC-chhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 344444444433322 34566777788888888888 88888888765 45678999999999999999999999999
Q ss_pred HHHCCCCCChHHHHHHHHHHhcc---------CcHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhc--------CCHH
Q 007573 396 MGLNGFDPDGITFLSLLSACGHA---------GKVNESMDLFELMVKVYGIIPSSEHYTCLVDILSRA--------GQLE 458 (597)
Q Consensus 396 m~~~g~~p~~~~~~~ll~~~~~~---------g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~--------g~~~ 458 (597)
..+. .|+...+..+..++... |++++|.+.++++.+. .+.+...|..+..+|... |+++
T Consensus 163 al~~--~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~~~~~~~~~g~~~ 238 (474)
T 4abn_A 163 ALTH--CKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQM--DVLDGRSWYILGNAYLSLYFNTGQNPKISQ 238 (474)
T ss_dssp HHTT--CCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHTTCCHHHHH
T ss_pred HHhh--CCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHHHhhccccchHH
Confidence 9875 57778889999999999 9999999999999874 233478899999999998 9999
Q ss_pred HHHHHHhhCC-CCC----CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCcHHHHHHHHHH
Q 007573 459 KAWQITQGMP-FEA----DTGVWGSLLAACVINLNVELGELAAKKMRELDPQNSAVYVMLSNLYAAAGMWRDVTRVRLLM 533 (597)
Q Consensus 459 ~A~~~~~~~~-~~p----~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 533 (597)
+|.+.|++.. ..| +...|..+..++...|++++|+..++++++++|+++.++..++.++...|++++|.+.++++
T Consensus 239 ~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~a~~~l~~~~~~lg~~~eAi~~~~~~ 318 (474)
T 4abn_A 239 QALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDPAWPEPQQREQQLLEFLSRLTSLLESKGKT 318 (474)
T ss_dssp HHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred HHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 9999999876 455 67899999999999999999999999999999999999999999999999999999765443
No 61
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.48 E-value=1.7e-12 Score=121.95 Aligned_cols=218 Identities=11% Similarity=0.007 Sum_probs=180.4
Q ss_pred hccchhHHHHHHHHHHHHhCC---CCcccHHHHHHHHHHhcCCHHHHHHHHhccC---CCChhhHHHHHHHHHHcCCHHH
Q 007573 315 SALQLLNEGRQSHVLVIRNGF---EANVSVCNAVITMYSRCGGILDSELAFRQIH---SPNLVSWNTIIAAFAQHGHYEK 388 (597)
Q Consensus 315 ~~~~~~~~a~~~~~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~ 388 (597)
...|++++|...++.+++... +.+..++..+...+...|++++|...|+++. +.+..+|..+...+...|++++
T Consensus 16 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~ 95 (275)
T 1xnf_A 16 QPTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDA 95 (275)
T ss_dssp CCCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHH
T ss_pred CccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHccCHHH
Confidence 356899999999999988642 2246778899999999999999999999876 5568899999999999999999
Q ss_pred HHHHHHHHHHCCCCCChHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHhhCC
Q 007573 389 ALIFFSQMGLNGFDPDGITFLSLLSACGHAGKVNESMDLFELMVKVYGIIPSSEHYTCLVDILSRAGQLEKAWQITQGMP 468 (597)
Q Consensus 389 A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 468 (597)
|++.|+++.+.. +.+..++..+..++...|++++|...++.+.+. .|+..........+...|++++|...+++..
T Consensus 96 A~~~~~~al~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~---~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~ 171 (275)
T 1xnf_A 96 AYEAFDSVLELD-PTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQD---DPNDPFRSLWLYLAEQKLDEKQAKEVLKQHF 171 (275)
T ss_dssp HHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHHCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcC-ccccHHHHHHHHHHHHhccHHHHHHHHHHHHHh---CCCChHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 999999999753 345788999999999999999999999999864 4554444455556678899999999997654
Q ss_pred --CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC----CchHHHHHHHHHhcCCcHHHHHHHHHHHhCC
Q 007573 469 --FEADTGVWGSLLAACVINLNVELGELAAKKMRELDPQN----SAVYVMLSNLYAAAGMWRDVTRVRLLMKEQG 537 (597)
Q Consensus 469 --~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 537 (597)
.+++...+ .++..+...++.++|...++++++..|.. +..+..++.+|...|++++|.+.++++.+..
T Consensus 172 ~~~~~~~~~~-~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 245 (275)
T 1xnf_A 172 EKSDKEQWGW-NIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANN 245 (275)
T ss_dssp HHSCCCSTHH-HHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred hcCCcchHHH-HHHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC
Confidence 33444444 46777888889999999999999877643 6788999999999999999999999998754
No 62
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.48 E-value=1.2e-12 Score=130.54 Aligned_cols=290 Identities=12% Similarity=0.011 Sum_probs=187.0
Q ss_pred hHHHHHHHHHcCCChHHHHHHHhhcCCCCCCc-----hHHHHHHHHHHhcCCHHHHHHHHhhcCC-----C----ChhHH
Q 007573 207 SWTVMITGYVKNERFCEARELFYRMPDYDKNV-----FVVTAMITGFCKVGMLENARLLFERIQP-----K----DCVSF 272 (597)
Q Consensus 207 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~-----~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~----~~~~~ 272 (597)
.+......+...|++++|...++.+.+..|+. .++..+...|...|++++|...+++... . ...++
T Consensus 11 ~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 90 (406)
T 3sf4_A 11 ELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKAS 90 (406)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHHHHHH
Confidence 34455556666677777777766666644442 3556666777777777777777665421 1 23467
Q ss_pred HHHHHHHHHcCChhHHHHHHHHhHHCCC-CCC----HHHHHHHHHHHhccch--------------------hHHHHHHH
Q 007573 273 NAMIAGYAQNGVAEEALRLFSGMIKMDM-QPD----DATLVSVFTACSALQL--------------------LNEGRQSH 327 (597)
Q Consensus 273 ~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~----~~~~~~ll~~~~~~~~--------------------~~~a~~~~ 327 (597)
..+...|...|++++|+..+++..+... .++ ..++..+...+...|+ ++.|...+
T Consensus 91 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~~~~ 170 (406)
T 3sf4_A 91 GNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAVDFY 170 (406)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHHHHHH
Confidence 7888888889999999988887765310 011 2244455555556666 55555444
Q ss_pred HHHHHhCCCCcccHHHHHHHHHHhcCCHHHHHHHHhccCC--CChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCC-CCC
Q 007573 328 VLVIRNGFEANVSVCNAVITMYSRCGGILDSELAFRQIHS--PNLVSWNTIIAAFAQHGHYEKALIFFSQMGLNGF-DPD 404 (597)
Q Consensus 328 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~ 404 (597)
....+. +..... ....++..+...+...|++++|+..+++..+... .++
T Consensus 171 ~~al~~----------------------------~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 222 (406)
T 3sf4_A 171 EENLSL----------------------------VTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGD 222 (406)
T ss_dssp HHHHHH----------------------------HHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHH----------------------------HHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCC
Confidence 443321 111110 1123566667777777888888777777654210 112
Q ss_pred ----hHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCC----hHHHHHHHHHHhhcCCHHHHHHHHhhCC----CCCC
Q 007573 405 ----GITFLSLLSACGHAGKVNESMDLFELMVKVYGIIPS----SEHYTCLVDILSRAGQLEKAWQITQGMP----FEAD 472 (597)
Q Consensus 405 ----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~----~~p~ 472 (597)
..++..+...+...|++++|...+++..+...-.++ ..++..+...|...|++++|.+.+++.. ..++
T Consensus 223 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~ 302 (406)
T 3sf4_A 223 KAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELND 302 (406)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred cHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCC
Confidence 236677777888888888888888877653211112 4567788888899999999988887754 1122
Q ss_pred ----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC------CCchHHHHHHHHHhcCCcH
Q 007573 473 ----TGVWGSLLAACVINLNVELGELAAKKMRELDPQ------NSAVYVMLSNLYAAAGMWR 524 (597)
Q Consensus 473 ----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~------~~~~~~~l~~~~~~~g~~~ 524 (597)
..++..+...+...|++++|...+++++++.+. ...++..++.++...|+..
T Consensus 303 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 364 (406)
T 3sf4_A 303 RIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISREVGDKSGELTARLNLSDLQMVLGLSY 364 (406)
T ss_dssp HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTS
T ss_pred cHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhhHhH
Confidence 457788888999999999999999999876332 2566788888888888764
No 63
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.43 E-value=4.5e-12 Score=111.11 Aligned_cols=167 Identities=11% Similarity=0.041 Sum_probs=142.7
Q ss_pred cccHHHHHHHHHHhcCCHHHHHHHHhccC---CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHH
Q 007573 338 NVSVCNAVITMYSRCGGILDSELAFRQIH---SPNLVSWNTIIAAFAQHGHYEKALIFFSQMGLNGFDPDGITFLSLLSA 414 (597)
Q Consensus 338 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~ 414 (597)
+..+|..+...|.+.|++++|+..|++.. +.+..+|..+...|...|++++|+..+.+..... +.+...+..+...
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~ 82 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLD-TTSAEAYYILGSA 82 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-chhHHHHHHHHHH
Confidence 45678888899999999999999998876 5677889999999999999999999999988753 3446677777788
Q ss_pred HhccCcHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHhhCC-CCC-CHHHHHHHHHHHHhcCCHHHH
Q 007573 415 CGHAGKVNESMDLFELMVKVYGIIPSSEHYTCLVDILSRAGQLEKAWQITQGMP-FEA-DTGVWGSLLAACVINLNVELG 492 (597)
Q Consensus 415 ~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~l~~~~~~~g~~~~a 492 (597)
+...++++.+...+....+. .+.+...+..+...|.+.|++++|++.+++.. ..| +..+|..++.++...|++++|
T Consensus 83 ~~~~~~~~~a~~~~~~a~~~--~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~A 160 (184)
T 3vtx_A 83 NFMIDEKQAAIDALQRAIAL--NTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKGLRDEA 160 (184)
T ss_dssp HHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHh--CccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhhhHHHHHHHHHHHCCCHHHH
Confidence 88999999999999998764 23457788999999999999999999998876 444 677899999999999999999
Q ss_pred HHHHHHHHhcCCCCC
Q 007573 493 ELAAKKMRELDPQNS 507 (597)
Q Consensus 493 ~~~~~~~~~~~p~~~ 507 (597)
+..++++++++|+++
T Consensus 161 ~~~~~~al~~~p~~a 175 (184)
T 3vtx_A 161 VKYFKKALEKEEKKA 175 (184)
T ss_dssp HHHHHHHHHTTHHHH
T ss_pred HHHHHHHHhCCccCH
Confidence 999999999999753
No 64
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.40 E-value=5e-10 Score=117.00 Aligned_cols=419 Identities=10% Similarity=0.015 Sum_probs=262.3
Q ss_pred hHHHHHHHhhcCC---CCcchHHHHHHHHHhCCChhHHHHHHhhCCCC---CcchHHHHHHHHHcCCC---hHHHHHHHc
Q 007573 66 ISAARQLFDQMTT---KDVITWNAIITGYWQNGFLQESKNLFQSMPVK---NIVSWNCMIAGCIDNDR---IDDAFDYFQ 136 (597)
Q Consensus 66 ~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~ll~~~~~~~~---~~~A~~~~~ 136 (597)
..+.+..|++... .|..+|..++..+.+.+.++.+..+|+++... ....|...+..-.+.++ ++.+.++|+
T Consensus 48 ~~d~i~~lE~~l~~np~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~fP~~~~lW~~Yi~~E~~~~~~~~~~~v~~lfe 127 (679)
T 4e6h_A 48 ESDVIGKLNDMIEEQPTDIFLYVKLLKHHVSLKQWKQVYETFDKLHDRFPLMANIWCMRLSLEFDKMEELDAAVIEPVLA 127 (679)
T ss_dssp CSCHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTC--CCCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHCcCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhhCCcchHHHHHHHHH
Confidence 3444444554433 46668888888888888898899898888743 56678888888778888 888999988
Q ss_pred cCC--C---CChhhHHHHHHHHHcCCCh--------HHHHHHHccCC------CC-CchhHHHHHHHHHh---------C
Q 007573 137 AMP--E---RNTATYNAMISGFLKHGRL--------EEATRLFEQMP------RR-NVISYTAMLDGFMK---------K 187 (597)
Q Consensus 137 ~~~--~---~~~~~~~~l~~~~~~~g~~--------~~A~~~~~~~~------~~-~~~~~~~li~~~~~---------~ 187 (597)
+.. . |++..|...+....+.++. +...++|+... .+ +...|...+..... +
T Consensus 128 Ral~~~~~~~sv~LW~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~eeq 207 (679)
T 4e6h_A 128 RCLSKELGNNDLSLWLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKFEEQ 207 (679)
T ss_dssp HHTCSSSCCCCHHHHHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHHHHH
T ss_pred HHHHhcCCCCCHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCcHHHH
Confidence 887 3 7777888777766555443 22335665422 22 33467666665432 2
Q ss_pred CChhHHHHHHHhccc-CCc---chHHHHHHHHHcCCChHHHHHHHhhcCCCCCCchHHHHHHHHHHhcCCHHHHHHHHhh
Q 007573 188 GEVDKARALSDYMSF-KNV---VSWTVMITGYVKNERFCEARELFYRMPDYDKNVFVVTAMITGFCKVGMLENARLLFER 263 (597)
Q Consensus 188 g~~~~A~~~~~~m~~-~~~---~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 263 (597)
++.+.+..+|++... |.. .+|......-...+. ..+.+++.+. ..+++.|...+..
T Consensus 208 ~~~~~~R~iy~raL~iP~~~~~~~w~~Y~~fe~~~~~-~~a~~~~~e~-------------------~~~y~~Ar~~~~e 267 (679)
T 4e6h_A 208 QRVQYIRKLYKTLLCQPMDCLESMWQRYTQWEQDVNQ-LTARRHIGEL-------------------SAQYMNARSLYQD 267 (679)
T ss_dssp HHHHHHHHHHHHHTTSCCSSHHHHHHHHHHHHHHHCT-TTHHHHHHHH-------------------HHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHhcCc-chHHHHHHHh-------------------hHHHHHHHHHHHH
Confidence 345667777777643 211 122111111000000 0011111110 0112222222211
Q ss_pred -------cCC---C-------------C------hhHHHHHHHHHHHcC-------ChhHHHHHHHHhHHCCCCCCHHHH
Q 007573 264 -------IQP---K-------------D------CVSFNAMIAGYAQNG-------VAEEALRLFSGMIKMDMQPDDATL 307 (597)
Q Consensus 264 -------~~~---~-------------~------~~~~~~li~~~~~~g-------~~~~A~~~~~~m~~~g~~p~~~~~ 307 (597)
+.. + + ...|...+.---..+ ..+.+..+|++.+.. +.-....|
T Consensus 268 ~~~~~~~l~r~~p~~~~~~~~~~~p~~~~~~~~ql~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~-~p~~~~lW 346 (679)
T 4e6h_A 268 WLNITKGLKRNLPITLNQATESNLPKPNEYDVQQLLIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQH-VCFAPEIW 346 (679)
T ss_dssp HHHHTTTCCCCCCSSSTTCCTTTSCCTTCCCHHHHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHH-TTTCHHHH
T ss_pred HHHHHHhHhhccccccccchhccCCCCchhHHHHHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHH-cCCCHHHH
Confidence 100 0 0 134555554333322 123455677777664 23355566
Q ss_pred HHHHHHHhccchhHHHH-HHHHHHHHhCCCCcccHHHHHHHHHHhcCCHHHHHHHHhccCC-------------CC----
Q 007573 308 VSVFTACSALQLLNEGR-QSHVLVIRNGFEANVSVCNAVITMYSRCGGILDSELAFRQIHS-------------PN---- 369 (597)
Q Consensus 308 ~~ll~~~~~~~~~~~a~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-------------~~---- 369 (597)
.....-+...|+.+.|. .+++..+... +.+...+-..+....+.|+++.|..+|+.+.. |+
T Consensus 347 ~~ya~~~~~~~~~~~a~r~il~rAi~~~-P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~ 425 (679)
T 4e6h_A 347 FNMANYQGEKNTDSTVITKYLKLGQQCI-PNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESA 425 (679)
T ss_dssp HHHHHHHHHHSCCTTHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHH
T ss_pred HHHHHHHHhcCcHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhh
Confidence 66666666677777785 8888887643 55666677788888888889888888887652 21
Q ss_pred --------hhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHhcc-CcHHHHHHHHHHhHHhcCCCCC
Q 007573 370 --------LVSWNTIIAAFAQHGHYEKALIFFSQMGLNGFDPDGITFLSLLSACGHA-GKVNESMDLFELMVKVYGIIPS 440 (597)
Q Consensus 370 --------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~-g~~~~a~~~~~~~~~~~~~~p~ 440 (597)
...|...+....+.|+.+.|..+|.+..+.-..+....|...+..-.+. ++.+.|..+|+...+.+ +.+
T Consensus 426 ~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~~--p~~ 503 (679)
T 4e6h_A 426 INQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKKLVTPDIYLENAYIEYHISKDTKTACKVLELGLKYF--ATD 503 (679)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGGGSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHH--TTC
T ss_pred hhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHC--CCc
Confidence 2368888888888899999999999998761122334444333332333 45899999999998864 345
Q ss_pred hHHHHHHHHHHhhcCCHHHHHHHHhhCC-CCC----CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCc
Q 007573 441 SEHYTCLVDILSRAGQLEKAWQITQGMP-FEA----DTGVWGSLLAACVINLNVELGELAAKKMRELDPQNSA 508 (597)
Q Consensus 441 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p----~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~ 508 (597)
...+...++.....|+.+.|..+|++.. ..| ....|...+..-...|+.+.+..+.+++.+..|+++.
T Consensus 504 ~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~~P~~~~ 576 (679)
T 4e6h_A 504 GEYINKYLDFLIYVNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVRTLEKRFFEKFPEVNK 576 (679)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHSTTCCH
T ss_pred hHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcH
Confidence 6677788888889999999999999876 233 2457888888888999999999999999999998754
No 65
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.40 E-value=3e-12 Score=128.14 Aligned_cols=268 Identities=9% Similarity=-0.012 Sum_probs=165.1
Q ss_pred HHHHHHHcCCChHHHHHHHhhcCCCCCCc-----hHHHHHHHHHHhcCCHHHHHHHHhhcCC---------CChhHHHHH
Q 007573 210 VMITGYVKNERFCEARELFYRMPDYDKNV-----FVVTAMITGFCKVGMLENARLLFERIQP---------KDCVSFNAM 275 (597)
Q Consensus 210 ~ll~~~~~~g~~~~a~~~~~~~~~~~~~~-----~~~~~l~~~~~~~g~~~~A~~~~~~~~~---------~~~~~~~~l 275 (597)
.+...+...|++++|...++.+.+..|+. .++..+...|...|++++|...+++... ....++..+
T Consensus 53 ~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l 132 (411)
T 4a1s_A 53 LEGERLCNAGDCRAGVAFFQAAIQAGTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSSGNL 132 (411)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHhCcHHHHHHHHHHHHHhcccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHHHHHH
Confidence 34455556666666666666665544432 2455666666666666666666655432 123467777
Q ss_pred HHHHHHcCChhHHHHHHHHhHHCC----CCC-CHHHHHHHHHHHhccch-----------------hHHHHHHHHHHHHh
Q 007573 276 IAGYAQNGVAEEALRLFSGMIKMD----MQP-DDATLVSVFTACSALQL-----------------LNEGRQSHVLVIRN 333 (597)
Q Consensus 276 i~~~~~~g~~~~A~~~~~~m~~~g----~~p-~~~~~~~ll~~~~~~~~-----------------~~~a~~~~~~~~~~ 333 (597)
...|...|++++|+..+++..+.. -.| ...++..+...+...|+ ++.|...+....+.
T Consensus 133 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~ 212 (411)
T 4a1s_A 133 GNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQENLKL 212 (411)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHHHHHHH
Confidence 777888888888888877765421 011 12234444444555555 44444443333221
Q ss_pred CCCCcccHHHHHHHHHHhcCCHHHHHHHHhccCC--CChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCC-CCC----hH
Q 007573 334 GFEANVSVCNAVITMYSRCGGILDSELAFRQIHS--PNLVSWNTIIAAFAQHGHYEKALIFFSQMGLNGF-DPD----GI 406 (597)
Q Consensus 334 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~----~~ 406 (597)
...... ....++..+...+...|++++|++.+++..+... .++ ..
T Consensus 213 ----------------------------~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 264 (411)
T 4a1s_A 213 ----------------------------MRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERR 264 (411)
T ss_dssp ----------------------------HHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred ----------------------------HHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHH
Confidence 111110 1123566666777777777777777777654210 011 23
Q ss_pred HHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCC----hHHHHHHHHHHhhcCCHHHHHHHHhhCC-C---CCC----HH
Q 007573 407 TFLSLLSACGHAGKVNESMDLFELMVKVYGIIPS----SEHYTCLVDILSRAGQLEKAWQITQGMP-F---EAD----TG 474 (597)
Q Consensus 407 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~---~p~----~~ 474 (597)
++..+...+...|++++|...+++..+...-..+ ...+..+...|...|++++|.+.+++.. . .++ ..
T Consensus 265 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 344 (411)
T 4a1s_A 265 ANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEAR 344 (411)
T ss_dssp HHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHH
Confidence 6677778888888888888888877654221111 4677788888999999999988887764 1 111 34
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 007573 475 VWGSLLAACVINLNVELGELAAKKMRELDPQ 505 (597)
Q Consensus 475 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~ 505 (597)
++..+...+...|++++|...+++++++.+.
T Consensus 345 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 375 (411)
T 4a1s_A 345 ACWSLGNAHSAIGGHERALKYAEQHLQLAXX 375 (411)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCCH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHHHhh
Confidence 7778888899999999999999999988764
No 66
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.39 E-value=6.6e-11 Score=113.14 Aligned_cols=184 Identities=10% Similarity=0.024 Sum_probs=116.7
Q ss_pred HHHHHHHHHHHHhCCCCcccHHHHHHHHHHhcCCHHHHHHHHhccC--CC-Chh-hHHHHHHHHHHcCCHHHHHHHHHHH
Q 007573 321 NEGRQSHVLVIRNGFEANVSVCNAVITMYSRCGGILDSELAFRQIH--SP-NLV-SWNTIIAAFAQHGHYEKALIFFSQM 396 (597)
Q Consensus 321 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~-~~~-~~~~li~~~~~~g~~~~A~~~~~~m 396 (597)
++|..+++..++.-.+.+...|..++..+.+.|++++|..+|++.. .| +.. .|..++..+.+.|++++|..+|++.
T Consensus 81 ~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a 160 (308)
T 2ond_A 81 DEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKA 160 (308)
T ss_dssp HHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhccccCccHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 5666666666553113344566666667777777777777776654 22 233 6777777777777777777777777
Q ss_pred HHCCCCCChHHHHHHHHHHh-ccCcHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHhhCCC----CC
Q 007573 397 GLNGFDPDGITFLSLLSACG-HAGKVNESMDLFELMVKVYGIIPSSEHYTCLVDILSRAGQLEKAWQITQGMPF----EA 471 (597)
Q Consensus 397 ~~~g~~p~~~~~~~ll~~~~-~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~p 471 (597)
.+.. +++...|........ ..|++++|..+|+.+.+.. +-+...|..++..+.+.|+.++|..+|++... +|
T Consensus 161 ~~~~-p~~~~~~~~~a~~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p 237 (308)
T 2ond_A 161 REDA-RTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKY--GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPP 237 (308)
T ss_dssp HTST-TCCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHH--TTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCG
T ss_pred HhcC-CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCH
Confidence 7643 233444443332221 2577777777777776642 22466677777777777777777777776541 33
Q ss_pred --CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCC
Q 007573 472 --DTGVWGSLLAACVINLNVELGELAAKKMRELDPQNS 507 (597)
Q Consensus 472 --~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~ 507 (597)
....|..++......|+.+.|..+++++++..|++.
T Consensus 238 ~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a~~~~p~~~ 275 (308)
T 2ond_A 238 EKSGEIWARFLAFESNIGDLASILKVEKRRFTAFREEY 275 (308)
T ss_dssp GGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHTTTTT
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHccccc
Confidence 345677777777777777777777777777777654
No 67
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.39 E-value=7.3e-12 Score=132.45 Aligned_cols=162 Identities=15% Similarity=0.187 Sum_probs=142.4
Q ss_pred ChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC-hHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCC-hHHHHH
Q 007573 369 NLVSWNTIIAAFAQHGHYEKALIFFSQMGLNGFDPD-GITFLSLLSACGHAGKVNESMDLFELMVKVYGIIPS-SEHYTC 446 (597)
Q Consensus 369 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~ 446 (597)
+..+|+.+...|.+.|++++|++.|++..+. .|+ ..++..+..++.+.|++++|.+.|+++.+. .|+ ...|..
T Consensus 8 ~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l--~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l---~P~~~~a~~n 82 (723)
T 4gyw_A 8 HADSLNNLANIKREQGNIEEAVRLYRKALEV--FPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRI---SPTFADAYSN 82 (723)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCCHHHHHH
Confidence 4567888888999999999999999998875 454 678888999999999999999999998864 454 788999
Q ss_pred HHHHHhhcCCHHHHHHHHhhCC-CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCcH
Q 007573 447 LVDILSRAGQLEKAWQITQGMP-FEA-DTGVWGSLLAACVINLNVELGELAAKKMRELDPQNSAVYVMLSNLYAAAGMWR 524 (597)
Q Consensus 447 l~~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~ 524 (597)
+..+|.+.|++++|++.|++.. ..| +...|..++.++...|++++|+..|+++++++|+++.++..++.+|...|+++
T Consensus 83 Lg~~l~~~g~~~~A~~~~~kAl~l~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~a~~~L~~~l~~~g~~~ 162 (723)
T 4gyw_A 83 MGNTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWT 162 (723)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCCT
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHhhhhhHHHhcccHH
Confidence 9999999999999999998865 455 56789999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHh
Q 007573 525 DVTRVRLLMKE 535 (597)
Q Consensus 525 ~A~~~~~~~~~ 535 (597)
+|.+.++++.+
T Consensus 163 ~A~~~~~kal~ 173 (723)
T 4gyw_A 163 DYDERMKKLVS 173 (723)
T ss_dssp THHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999888765
No 68
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.39 E-value=1.9e-11 Score=106.97 Aligned_cols=163 Identities=16% Similarity=0.029 Sum_probs=114.1
Q ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChHHHHHHHHHH
Q 007573 372 SWNTIIAAFAQHGHYEKALIFFSQMGLNGFDPDGITFLSLLSACGHAGKVNESMDLFELMVKVYGIIPSSEHYTCLVDIL 451 (597)
Q Consensus 372 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~ 451 (597)
.|..+...+...|++++|+..++++.+.. +.+..++..+...+...|++++|...++.+.+. .+.+...+..++..+
T Consensus 10 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~ 86 (186)
T 3as5_A 10 YYRDKGISHAKAGRYSQAVMLLEQVYDAD-AFDVDVALHLGIAYVKTGAVDRGTELLERSLAD--APDNVKVATVLGLTY 86 (186)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHTTTCCTT-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhC-ccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCCHHHHHHHHHHH
Confidence 34445555566666666666666655432 234555666666666666777777766666553 123456666677777
Q ss_pred hhcCCHHHHHHHHhhCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCcHHHHHH
Q 007573 452 SRAGQLEKAWQITQGMP--FEADTGVWGSLLAACVINLNVELGELAAKKMRELDPQNSAVYVMLSNLYAAAGMWRDVTRV 529 (597)
Q Consensus 452 ~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~ 529 (597)
...|++++|.+.++++. .+.+...+..++..+...|++++|...++++++..|.++.++..++.++...|++++|.+.
T Consensus 87 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~ 166 (186)
T 3as5_A 87 VQVQKYDLAVPLLIKVAEANPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQMGRHEEALPH 166 (186)
T ss_dssp HHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHhcCHHHHHHHHHHHHhcCcHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCHHHHHHH
Confidence 77777777777776654 3345667778888888888888888888888888888888888888888888999988888
Q ss_pred HHHHHhCC
Q 007573 530 RLLMKEQG 537 (597)
Q Consensus 530 ~~~~~~~~ 537 (597)
++++.+..
T Consensus 167 ~~~~~~~~ 174 (186)
T 3as5_A 167 FKKANELD 174 (186)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHcC
Confidence 88877643
No 69
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.38 E-value=5.4e-12 Score=122.08 Aligned_cols=268 Identities=12% Similarity=-0.001 Sum_probs=157.9
Q ss_pred HHHHHHHcCCChHHHHHHHhhcCCCCCCc-----hHHHHHHHHHHhcCCHHHHHHHHhhcCC---------CChhHHHHH
Q 007573 210 VMITGYVKNERFCEARELFYRMPDYDKNV-----FVVTAMITGFCKVGMLENARLLFERIQP---------KDCVSFNAM 275 (597)
Q Consensus 210 ~ll~~~~~~g~~~~a~~~~~~~~~~~~~~-----~~~~~l~~~~~~~g~~~~A~~~~~~~~~---------~~~~~~~~l 275 (597)
.....+...|++++|...++.+.+..|+. .++..+...+...|++++|...+++... ....++..+
T Consensus 10 ~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l 89 (338)
T 3ro2_A 10 LEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNL 89 (338)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHhccHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHHHHHH
Confidence 34455556666666666666665544432 3455666666666776666666655321 123466777
Q ss_pred HHHHHHcCChhHHHHHHHHhHHCCC-CCC----HHHHHHHHHHHhccch--------------------hHHHHHHHHHH
Q 007573 276 IAGYAQNGVAEEALRLFSGMIKMDM-QPD----DATLVSVFTACSALQL--------------------LNEGRQSHVLV 330 (597)
Q Consensus 276 i~~~~~~g~~~~A~~~~~~m~~~g~-~p~----~~~~~~ll~~~~~~~~--------------------~~~a~~~~~~~ 330 (597)
...+...|++++|+..+++..+... .++ ..++..+...+...|+ ++.|...+...
T Consensus 90 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~a 169 (338)
T 3ro2_A 90 GNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYEEN 169 (338)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHHHHHH
Confidence 7778888888888888777654210 111 1244444455555555 45554444433
Q ss_pred HHhCCCCcccHHHHHHHHHHhcCCHHHHHHHHhccCC--CChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCC-CCC---
Q 007573 331 IRNGFEANVSVCNAVITMYSRCGGILDSELAFRQIHS--PNLVSWNTIIAAFAQHGHYEKALIFFSQMGLNGF-DPD--- 404 (597)
Q Consensus 331 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~--- 404 (597)
.+. ...... .....+..+...+...|++++|.+.+++..+... .++
T Consensus 170 ~~~----------------------------~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~ 221 (338)
T 3ro2_A 170 LSL----------------------------VTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAA 221 (338)
T ss_dssp HHH----------------------------HHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHH
T ss_pred HHH----------------------------HHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHH
Confidence 221 111100 0122455556666666777777776666553210 011
Q ss_pred -hHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCC----hHHHHHHHHHHhhcCCHHHHHHHHhhCC----CCCC---
Q 007573 405 -GITFLSLLSACGHAGKVNESMDLFELMVKVYGIIPS----SEHYTCLVDILSRAGQLEKAWQITQGMP----FEAD--- 472 (597)
Q Consensus 405 -~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~----~~p~--- 472 (597)
..++..+...+...|++++|...+++..+...-.++ ...+..+...|...|++++|...+++.. ..++
T Consensus 222 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~ 301 (338)
T 3ro2_A 222 ERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIG 301 (338)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHH
Confidence 235666677777778888887777776543211112 4567778888888888888888887654 1111
Q ss_pred -HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 007573 473 -TGVWGSLLAACVINLNVELGELAAKKMRELDPQ 505 (597)
Q Consensus 473 -~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~ 505 (597)
..++..+...+...|++++|...+++++++.+.
T Consensus 302 ~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~ 335 (338)
T 3ro2_A 302 EGRACWSLGNAYTALGNHDQAMHFAEKHLEISRE 335 (338)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHC---
T ss_pred HHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHh
Confidence 346778888899999999999999999987654
No 70
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.36 E-value=8.2e-11 Score=112.48 Aligned_cols=212 Identities=6% Similarity=-0.022 Sum_probs=163.1
Q ss_pred HHHHHHHHHHHhCCCCcccHHHHHHHHHH-------hcCCH-------HHHHHHHhccC----CCChhhHHHHHHHHHHc
Q 007573 322 EGRQSHVLVIRNGFEANVSVCNAVITMYS-------RCGGI-------LDSELAFRQIH----SPNLVSWNTIIAAFAQH 383 (597)
Q Consensus 322 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~-------~~g~~-------~~A~~~~~~~~----~~~~~~~~~li~~~~~~ 383 (597)
+|..+++.+++.. +.+..+|..++..+. +.|++ ++|..+|++.. +.+...|..++..+...
T Consensus 34 ~a~~~~~~al~~~-p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~~ 112 (308)
T 2ond_A 34 RVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESR 112 (308)
T ss_dssp HHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHc-CCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhc
Confidence 3444444444432 344555555555554 35775 89999998764 33556899999999999
Q ss_pred CCHHHHHHHHHHHHHCCCCCC-hH-HHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHh-hcCCHHHH
Q 007573 384 GHYEKALIFFSQMGLNGFDPD-GI-TFLSLLSACGHAGKVNESMDLFELMVKVYGIIPSSEHYTCLVDILS-RAGQLEKA 460 (597)
Q Consensus 384 g~~~~A~~~~~~m~~~g~~p~-~~-~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~-~~g~~~~A 460 (597)
|++++|.++|+++.+. .|+ .. .|..+...+.+.|++++|..+|+++.+. .+++...|...+.... ..|+.++|
T Consensus 113 ~~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~--~p~~~~~~~~~a~~~~~~~~~~~~A 188 (308)
T 2ond_A 113 MKYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKARED--ARTRHHVYVTAALMEYYCSKDKSVA 188 (308)
T ss_dssp TCHHHHHHHHHHHHTS--SSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTS--TTCCTHHHHHHHHHHHHTSCCHHHH
T ss_pred CCHHHHHHHHHHHHhc--cccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhc--CCCCHHHHHHHHHHHHHHcCCHHHH
Confidence 9999999999999974 554 33 7888999999999999999999999863 2334555554444432 36999999
Q ss_pred HHHHhhCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc---CCC-CCchHHHHHHHHHhcCCcHHHHHHHHHHH
Q 007573 461 WQITQGMP--FEADTGVWGSLLAACVINLNVELGELAAKKMREL---DPQ-NSAVYVMLSNLYAAAGMWRDVTRVRLLMK 534 (597)
Q Consensus 461 ~~~~~~~~--~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~---~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 534 (597)
.++|++.. .+.+...|..++..+...|++++|+.+|+++++. .|+ +...+..++..+.+.|+.++|..+++++.
T Consensus 189 ~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a~ 268 (308)
T 2ond_A 189 FKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRF 268 (308)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 99999875 3346789999999999999999999999999996 443 46788899999999999999999999998
Q ss_pred hCCC
Q 007573 535 EQGV 538 (597)
Q Consensus 535 ~~~~ 538 (597)
+..+
T Consensus 269 ~~~p 272 (308)
T 2ond_A 269 TAFR 272 (308)
T ss_dssp HHTT
T ss_pred HHcc
Confidence 7654
No 71
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.36 E-value=2.4e-11 Score=110.59 Aligned_cols=163 Identities=11% Similarity=0.005 Sum_probs=77.6
Q ss_pred hhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCC-hHHHHHHHH
Q 007573 371 VSWNTIIAAFAQHGHYEKALIFFSQMGLNGFDPDGITFLSLLSACGHAGKVNESMDLFELMVKVYGIIPS-SEHYTCLVD 449 (597)
Q Consensus 371 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~ 449 (597)
..|......+...|++++|++.|++..+....++...+..+..++...|++++|...+++..+. .|+ ...+..+..
T Consensus 8 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~---~p~~~~~~~~l~~ 84 (228)
T 4i17_A 8 NQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKK---NYNLANAYIGKSA 84 (228)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT---TCSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHh---CcchHHHHHHHHH
Confidence 3344444444444444444444444444321133344444444444444444444444444421 222 334444444
Q ss_pred HHhhcCCHHHHHHHHhhCC-CCC-CH-------HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC--CCchHHHHHHHHH
Q 007573 450 ILSRAGQLEKAWQITQGMP-FEA-DT-------GVWGSLLAACVINLNVELGELAAKKMRELDPQ--NSAVYVMLSNLYA 518 (597)
Q Consensus 450 ~~~~~g~~~~A~~~~~~~~-~~p-~~-------~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~--~~~~~~~l~~~~~ 518 (597)
+|...|++++|.+.+++.. ..| +. ..|..+...+...|++++|+..++++++++|+ ++.++..++.+|.
T Consensus 85 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~ 164 (228)
T 4i17_A 85 AYRDMKNNQEYIATLTEGIKAVPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVTSKKWKTDALYSLGVLFY 164 (228)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHH
T ss_pred HHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHH
Confidence 4444444444444444432 122 22 22444444444455555555555555555554 4444555555554
Q ss_pred hcCC---------------------------cHHHHHHHHHHHhC
Q 007573 519 AAGM---------------------------WRDVTRVRLLMKEQ 536 (597)
Q Consensus 519 ~~g~---------------------------~~~A~~~~~~~~~~ 536 (597)
..|+ +++|...+++..+.
T Consensus 165 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~l 209 (228)
T 4i17_A 165 NNGADVLRKATPLASSNKEKYASEKAKADAAFKKAVDYLGEAVTL 209 (228)
T ss_dssp HHHHHHHHHHGGGTTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 4444 48899999988764
No 72
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.36 E-value=2.6e-11 Score=120.09 Aligned_cols=163 Identities=13% Similarity=0.152 Sum_probs=80.8
Q ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHCCC-CCC----hHHHHHHHHHHhccCcHHHHHHHHHHhHHhc---CCCCC-hH
Q 007573 372 SWNTIIAAFAQHGHYEKALIFFSQMGLNGF-DPD----GITFLSLLSACGHAGKVNESMDLFELMVKVY---GIIPS-SE 442 (597)
Q Consensus 372 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~---~~~p~-~~ 442 (597)
+++.+...|...|++++|++.+++..+... .++ ..++..+..++...|++++|.+.+++..+.. +..|. ..
T Consensus 186 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 265 (383)
T 3ulq_A 186 CHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQ 265 (383)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHH
Confidence 344444455555555555555554442100 011 1244555555555555555555555544310 11122 44
Q ss_pred HHHHHHHHHhhcCCHHHHHHHHhhCC------CCCC-HHHHHHHHHHHHhcCC---HHHHHHHHHHHHhcCCCCCchHHH
Q 007573 443 HYTCLVDILSRAGQLEKAWQITQGMP------FEAD-TGVWGSLLAACVINLN---VELGELAAKKMRELDPQNSAVYVM 512 (597)
Q Consensus 443 ~~~~l~~~~~~~g~~~~A~~~~~~~~------~~p~-~~~~~~l~~~~~~~g~---~~~a~~~~~~~~~~~p~~~~~~~~ 512 (597)
++..+...|.+.|++++|.+.+++.. ..|. ...+..+...+...|+ +++|+..+++. ...|.....+..
T Consensus 266 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~-~~~~~~~~~~~~ 344 (383)
T 3ulq_A 266 AYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESK-MLYADLEDFAID 344 (383)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHT-TCHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHC-cCHHHHHHHHHH
Confidence 55555566666666666665555433 0111 1123445555666666 55555555544 112222445666
Q ss_pred HHHHHHhcCCcHHHHHHHHHHHh
Q 007573 513 LSNLYAAAGMWRDVTRVRLLMKE 535 (597)
Q Consensus 513 l~~~~~~~g~~~~A~~~~~~~~~ 535 (597)
++.+|...|++++|.+.+++..+
T Consensus 345 la~~y~~~g~~~~A~~~~~~al~ 367 (383)
T 3ulq_A 345 VAKYYHERKNFQKASAYFLKVEQ 367 (383)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHH
Confidence 67777777777777777766654
No 73
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.36 E-value=1e-09 Score=114.73 Aligned_cols=397 Identities=8% Similarity=-0.017 Sum_probs=275.1
Q ss_pred CCChhhHHHHHHHHHcCCChHHHHHHHccCCC---CCchhHHHHHHHHHhCCC---hhHHHHHHHhccc-----CCcchH
Q 007573 140 ERNTATYNAMISGFLKHGRLEEATRLFEQMPR---RNVISYTAMLDGFMKKGE---VDKARALSDYMSF-----KNVVSW 208 (597)
Q Consensus 140 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~---~~~A~~~~~~m~~-----~~~~~~ 208 (597)
+.|..+|..++..+.+.+.++.+..+|+++.. .....|...+..-.+.|+ ++.+..+|++... |++..|
T Consensus 63 p~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~fP~~~~lW~~Yi~~E~~~~~~~~~~~v~~lfeRal~~~~~~~sv~LW 142 (679)
T 4e6h_A 63 PTDIFLYVKLLKHHVSLKQWKQVYETFDKLHDRFPLMANIWCMRLSLEFDKMEELDAAVIEPVLARCLSKELGNNDLSLW 142 (679)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTC--CCCHHHHHHHHHHHTCSSSCCCCHHHH
T ss_pred cCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhhCCcchHHHHHHHHHHHHHhcCCCCCHHHH
Confidence 56889999999999999999999999999875 355678888888888898 9999999999943 777778
Q ss_pred HHHHHHHHcCCCh--------HHHHHHHhhcCC---C-CCC-chHHHHHHHHHH---------hcCCHHHHHHHHhhcCC
Q 007573 209 TVMITGYVKNERF--------CEARELFYRMPD---Y-DKN-VFVVTAMITGFC---------KVGMLENARLLFERIQP 266 (597)
Q Consensus 209 ~~ll~~~~~~g~~--------~~a~~~~~~~~~---~-~~~-~~~~~~l~~~~~---------~~g~~~~A~~~~~~~~~ 266 (597)
...+....+.++. +...++|+.+.. . .++ ..+|...+.... ..++++.+.++|++...
T Consensus 143 ~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~eeq~~~~~~R~iy~raL~ 222 (679)
T 4e6h_A 143 LSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKFEEQQRVQYIRKLYKTLLC 222 (679)
T ss_dssp HHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCcHHHHhHHHHHHHHHHHHHh
Confidence 7777665554433 334577776553 3 443 457777776543 23457889999998764
Q ss_pred -C--Ch-hHHHHHHHHHHHcCC-------------hhHHHHHHHHhHH--CCCC---------------C-----CH---
Q 007573 267 -K--DC-VSFNAMIAGYAQNGV-------------AEEALRLFSGMIK--MDMQ---------------P-----DD--- 304 (597)
Q Consensus 267 -~--~~-~~~~~li~~~~~~g~-------------~~~A~~~~~~m~~--~g~~---------------p-----~~--- 304 (597)
| +. ..|......-...+. ++.|...+.++.. .++. | +.
T Consensus 223 iP~~~~~~~w~~Y~~fe~~~~~~~a~~~~~e~~~~y~~Ar~~~~e~~~~~~~l~r~~p~~~~~~~~~~~p~~~~~~~~ql 302 (679)
T 4e6h_A 223 QPMDCLESMWQRYTQWEQDVNQLTARRHIGELSAQYMNARSLYQDWLNITKGLKRNLPITLNQATESNLPKPNEYDVQQL 302 (679)
T ss_dssp SCCSSHHHHHHHHHHHHHHHCTTTHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCCSSSTTCCTTTSCCTTCCCHHHH
T ss_pred CccHHHHHHHHHHHHHHHhcCcchHHHHHHHhhHHHHHHHHHHHHHHHHHHhHhhccccccccchhccCCCCchhHHHHH
Confidence 2 11 244333222111111 2233444444321 1111 1 00
Q ss_pred HHHHHHHHHHhccc-------hhHHHHHHHHHHHHhCCCCcccHHHHHHHHHHhcCCHHHHH-HHHhccC---CCChhhH
Q 007573 305 ATLVSVFTACSALQ-------LLNEGRQSHVLVIRNGFEANVSVCNAVITMYSRCGGILDSE-LAFRQIH---SPNLVSW 373 (597)
Q Consensus 305 ~~~~~ll~~~~~~~-------~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~-~~~~~~~---~~~~~~~ 373 (597)
..|...+.---..+ ..+.+..+++.++... +....+|-..+..+...|+.++|. .+|++.. +.+...|
T Consensus 303 ~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~~-p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~~P~s~~Lw 381 (679)
T 4e6h_A 303 LIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQHV-CFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQCIPNSAVLA 381 (679)
T ss_dssp HHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHT-TTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHHCTTCHHHH
T ss_pred HHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHHc-CCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhCCCCHHHH
Confidence 12222222211111 2334556788777764 567888888888888999999996 9998776 4566678
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHCCC---------CCC------------hHHHHHHHHHHhccCcHHHHHHHHHHhH
Q 007573 374 NTIIAAFAQHGHYEKALIFFSQMGLNGF---------DPD------------GITFLSLLSACGHAGKVNESMDLFELMV 432 (597)
Q Consensus 374 ~~li~~~~~~g~~~~A~~~~~~m~~~g~---------~p~------------~~~~~~ll~~~~~~g~~~~a~~~~~~~~ 432 (597)
-..+...-+.|++++|.++|+++..... .|+ ...|...+....+.|..+.|+.+|..+.
T Consensus 382 l~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~ 461 (679)
T 4e6h_A 382 FSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCR 461 (679)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 8888888999999999999999886310 142 2357777788788899999999999998
Q ss_pred HhcCCCCChHHHHHHHHHHhhcC-CHHHHHHHHhhCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC---C
Q 007573 433 KVYGIIPSSEHYTCLVDILSRAG-QLEKAWQITQGMP--FEADTGVWGSLLAACVINLNVELGELAAKKMRELDPQ---N 506 (597)
Q Consensus 433 ~~~~~~p~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~---~ 506 (597)
+.. -.+....|...+.+-.+.| +.+.|.++|+... .+.+...|...+......|+.+.|..+|+++++..|+ .
T Consensus 462 ~~~-~~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~~p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~~~~ 540 (679)
T 4e6h_A 462 RLK-KLVTPDIYLENAYIEYHISKDTKTACKVLELGLKYFATDGEYINKYLDFLIYVNEESQVKSLFESSIDKISDSHLL 540 (679)
T ss_dssp HTG-GGSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSSTTHH
T ss_pred Hhc-CCCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCHHHH
Confidence 741 1223445555444444554 5899999998765 3446677888888888899999999999999998874 3
Q ss_pred CchHHHHHHHHHhcCCcHHHHHHHHHHHhCCC
Q 007573 507 SAVYVMLSNLYAAAGMWRDVTRVRLLMKEQGV 538 (597)
Q Consensus 507 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 538 (597)
...+...+..-...|+.+.+.++.+++.+.-+
T Consensus 541 ~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~~P 572 (679)
T 4e6h_A 541 KMIFQKVIFFESKVGSLNSVRTLEKRFFEKFP 572 (679)
T ss_dssp HHHHHHHHHHHHHTCCSHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 56788888889999999999999999987543
No 74
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.34 E-value=1e-09 Score=108.08 Aligned_cols=195 Identities=13% Similarity=0.042 Sum_probs=135.8
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhccC-------C---C-ChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCC--C--ChH
Q 007573 342 CNAVITMYSRCGGILDSELAFRQIH-------S---P-NLVSWNTIIAAFAQHGHYEKALIFFSQMGLNGFD--P--DGI 406 (597)
Q Consensus 342 ~~~l~~~~~~~g~~~~A~~~~~~~~-------~---~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~--p--~~~ 406 (597)
+..+...+...|++++|...+++.. . + ....+..+...+...|++++|...+++....... + ...
T Consensus 96 ~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 175 (373)
T 1hz4_A 96 LIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQ 175 (373)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHH
Confidence 4455666677777777777666543 1 1 1235566777888889999999998887753211 1 134
Q ss_pred HHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChHHHH-----HHHHHHhhcCCHHHHHHHHhhCC-CCCC-----HHH
Q 007573 407 TFLSLLSACGHAGKVNESMDLFELMVKVYGIIPSSEHYT-----CLVDILSRAGQLEKAWQITQGMP-FEAD-----TGV 475 (597)
Q Consensus 407 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~-----~l~~~~~~~g~~~~A~~~~~~~~-~~p~-----~~~ 475 (597)
++..+...+...|++++|...+++......-......+. ..+..+...|++++|...+++.. ..|. ...
T Consensus 176 ~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~ 255 (373)
T 1hz4_A 176 CLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQ 255 (373)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHH
Confidence 677777888889999999999988875422211111121 23345778999999999998876 2221 235
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC------CchHHHHHHHHHhcCCcHHHHHHHHHHHhC
Q 007573 476 WGSLLAACVINLNVELGELAAKKMRELDPQN------SAVYVMLSNLYAAAGMWRDVTRVRLLMKEQ 536 (597)
Q Consensus 476 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 536 (597)
+..+...+...|++++|...++++++..+.. ...+..++.++...|+.++|.+.+++....
T Consensus 256 ~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~ 322 (373)
T 1hz4_A 256 WRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKL 322 (373)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 6677788899999999999999988764321 246777899999999999999999988763
No 75
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.34 E-value=2.7e-11 Score=123.07 Aligned_cols=179 Identities=10% Similarity=-0.008 Sum_probs=156.2
Q ss_pred HHHHHHHHhccC---CCChhhHHHHHHHHHHcCCH-HHHHHHHHHHHHCCCCCChHHHHHHHHHHhccCcHHHHHHHHHH
Q 007573 355 ILDSELAFRQIH---SPNLVSWNTIIAAFAQHGHY-EKALIFFSQMGLNGFDPDGITFLSLLSACGHAGKVNESMDLFEL 430 (597)
Q Consensus 355 ~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~-~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~ 430 (597)
++++...++... +.+...|..+...+...|++ ++|++.|++..+.. +-+...+..+..++...|++++|.+.|++
T Consensus 84 ~~~al~~l~~~~~~~~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~ 162 (474)
T 4abn_A 84 MEKTLQQMEEVLGSAQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLE-PELVEAWNQLGEVYWKKGDVTSAHTCFSG 162 (474)
T ss_dssp HHHHHHHHHHHHTTCCCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccCchhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 455555555443 45678899999999999999 99999999998763 33477899999999999999999999999
Q ss_pred hHHhcCCCCChHHHHHHHHHHhhc---------CCHHHHHHHHhhCC-CCC-CHHHHHHHHHHHHhc--------CCHHH
Q 007573 431 MVKVYGIIPSSEHYTCLVDILSRA---------GQLEKAWQITQGMP-FEA-DTGVWGSLLAACVIN--------LNVEL 491 (597)
Q Consensus 431 ~~~~~~~~p~~~~~~~l~~~~~~~---------g~~~~A~~~~~~~~-~~p-~~~~~~~l~~~~~~~--------g~~~~ 491 (597)
+.+ +.|+...+..+..+|... |++++|.+.+++.. ..| +...|..+..++... |++++
T Consensus 163 al~---~~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~g~~~~ 239 (474)
T 4abn_A 163 ALT---HCKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVLDGRSWYILGNAYLSLYFNTGQNPKISQQ 239 (474)
T ss_dssp HHT---TCCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHTTCCHHHHHH
T ss_pred HHh---hCCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhhccccchHHH
Confidence 874 468888999999999999 99999999999876 344 577999999999988 99999
Q ss_pred HHHHHHHHHhcCC---CCCchHHHHHHHHHhcCCcHHHHHHHHHHHhCC
Q 007573 492 GELAAKKMRELDP---QNSAVYVMLSNLYAAAGMWRDVTRVRLLMKEQG 537 (597)
Q Consensus 492 a~~~~~~~~~~~p---~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 537 (597)
|+..++++++++| .++.++..++.+|...|++++|.+.+++..+..
T Consensus 240 A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~ 288 (474)
T 4abn_A 240 ALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALD 288 (474)
T ss_dssp HHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 9999999999999 899999999999999999999999999998754
No 76
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.33 E-value=2.6e-11 Score=120.04 Aligned_cols=290 Identities=10% Similarity=0.011 Sum_probs=210.0
Q ss_pred HHcCCChHHHHHHHhhcCC----CCCC--chHHHHHHHH--HHhcCCHHHHH-----------HHHhhcCCC--ChhH--
Q 007573 215 YVKNERFCEARELFYRMPD----YDKN--VFVVTAMITG--FCKVGMLENAR-----------LLFERIQPK--DCVS-- 271 (597)
Q Consensus 215 ~~~~g~~~~a~~~~~~~~~----~~~~--~~~~~~l~~~--~~~~g~~~~A~-----------~~~~~~~~~--~~~~-- 271 (597)
+.+.+++++|..+++++.+ ...+ ...|..++.. ..-.+.++.+. ..++.+... +...
T Consensus 22 ~i~~~~~~~A~~l~~~i~~~~~~~~~~~~~~~y~~ll~~r~~~~~~~~~~~~~~~~e~~~~~~~~~~~i~~~~~~~~~~l 101 (383)
T 3ulq_A 22 YIRRFSIPDAEYLRREIKQELDQMEEDQDLHLYYSLMEFRHNLMLEYLEPLEKMRIEEQPRLSDLLLEIDKKQARLTGLL 101 (383)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHGGGGGSCGGGSCCHHHHHHHHHHHTHHHHHHH
T ss_pred HHHHcCHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHhhcCcccccccccccchhhHHHHHHhcCCCchhHH
Confidence 4578999999999998865 2233 3333444332 11223333333 555544321 1111
Q ss_pred ----HHHHHHHHHHcCChhHHHHHHHHhHHCC-CCCC----HHHHHHHHHHHhccchhHHHHHHHHHHHHhCCCC-----
Q 007573 272 ----FNAMIAGYAQNGVAEEALRLFSGMIKMD-MQPD----DATLVSVFTACSALQLLNEGRQSHVLVIRNGFEA----- 337 (597)
Q Consensus 272 ----~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p~----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~----- 337 (597)
+......+...|++++|+..|++..+.- -.++ ..++..+...+...|+.+.|...+..+++.....
T Consensus 102 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~ 181 (383)
T 3ulq_A 102 EYYFNFFRGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNI 181 (383)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHH
T ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchH
Confidence 2235667888999999999999987641 1122 3467777888889999999999999987652111
Q ss_pred -cccHHHHHHHHHHhcCCHHHHHHHHhccC-----CCCh----hhHHHHHHHHHHcCCHHHHHHHHHHHHHC----CCCC
Q 007573 338 -NVSVCNAVITMYSRCGGILDSELAFRQIH-----SPNL----VSWNTIIAAFAQHGHYEKALIFFSQMGLN----GFDP 403 (597)
Q Consensus 338 -~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-----~~~~----~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~p 403 (597)
...+++.+...|...|++++|...+++.. .++. .++..+...|...|++++|++.+++..+. +..|
T Consensus 182 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~ 261 (383)
T 3ulq_A 182 RLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILP 261 (383)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGG
T ss_pred HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccch
Confidence 23578889999999999999999998776 1222 37888999999999999999999998762 3223
Q ss_pred -ChHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCC---hHHHHHHHHHHhhcCC---HHHHHHHHhhCCCCCC-HHH
Q 007573 404 -DGITFLSLLSACGHAGKVNESMDLFELMVKVYGIIPS---SEHYTCLVDILSRAGQ---LEKAWQITQGMPFEAD-TGV 475 (597)
Q Consensus 404 -~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~---~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~p~-~~~ 475 (597)
...++..+...+...|++++|...+++..+...-..+ ...+..+...|...|+ .++|..++++....|+ ...
T Consensus 262 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~ 341 (383)
T 3ulq_A 262 SLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESKMLYADLEDF 341 (383)
T ss_dssp GHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred hHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCcCHHHHHHH
Confidence 3567888999999999999999999988764221112 3346778889999999 8999999999864444 346
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcCC
Q 007573 476 WGSLLAACVINLNVELGELAAKKMRELDP 504 (597)
Q Consensus 476 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~p 504 (597)
+..+...|...|++++|...+++++++..
T Consensus 342 ~~~la~~y~~~g~~~~A~~~~~~al~~~~ 370 (383)
T 3ulq_A 342 AIDVAKYYHERKNFQKASAYFLKVEQVRQ 370 (383)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Confidence 77888999999999999999999987643
No 77
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.33 E-value=1.9e-12 Score=123.91 Aligned_cols=237 Identities=13% Similarity=0.108 Sum_probs=130.4
Q ss_pred hhHHHHHHHHHHHcCChhHHHHHHHHhHHC-------CCCCCHHHHHHHHHHHhccchhHHHHHHHHHHHHh------CC
Q 007573 269 CVSFNAMIAGYAQNGVAEEALRLFSGMIKM-------DMQPDDATLVSVFTACSALQLLNEGRQSHVLVIRN------GF 335 (597)
Q Consensus 269 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-------g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~------~~ 335 (597)
..++..+...+...|++++|+.+++++.+. ........+..+...+...|++++|...+..+++. +.
T Consensus 27 ~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 106 (311)
T 3nf1_A 27 LRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKD 106 (311)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCC
Confidence 457888889999999999999999888762 11112334444555555556666666555555432 11
Q ss_pred CCcccHHHHHHHHHHhcCCHHHHHHHHhccCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHC------CCCCC-hHHH
Q 007573 336 EANVSVCNAVITMYSRCGGILDSELAFRQIHSPNLVSWNTIIAAFAQHGHYEKALIFFSQMGLN------GFDPD-GITF 408 (597)
Q Consensus 336 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~------g~~p~-~~~~ 408 (597)
.+ ....++..+...+...|++++|++.++++.+. +-.|+ ...+
T Consensus 107 ~~------------------------------~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~ 156 (311)
T 3nf1_A 107 HP------------------------------AVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQL 156 (311)
T ss_dssp CH------------------------------HHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred Ch------------------------------HHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHH
Confidence 01 11234455555555666666666666555442 11122 3345
Q ss_pred HHHHHHHhccCcHHHHHHHHHHhHHhc-----CCCCC-hHHHHHHHHHHhhcCCHHHHHHHHhhCC----------CCCC
Q 007573 409 LSLLSACGHAGKVNESMDLFELMVKVY-----GIIPS-SEHYTCLVDILSRAGQLEKAWQITQGMP----------FEAD 472 (597)
Q Consensus 409 ~~ll~~~~~~g~~~~a~~~~~~~~~~~-----~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~----------~~p~ 472 (597)
..+...+...|++++|.++++++.+.. +..|. ...+..+...|...|++++|.+.++++. ..+.
T Consensus 157 ~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 236 (311)
T 3nf1_A 157 NNLALLCQNQGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDE 236 (311)
T ss_dssp HHHHHHHHTTTCHHHHHHHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC-----
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcc
Confidence 556666666677777776666665431 11122 3456666666777777777776665543 0111
Q ss_pred -------HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCcHHHHHHHHHHHh
Q 007573 473 -------TGVWGSLLAACVINLNVELGELAAKKMRELDPQNSAVYVMLSNLYAAAGMWRDVTRVRLLMKE 535 (597)
Q Consensus 473 -------~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 535 (597)
...+..+...+...+.+.++...++++....|..+.++..++.+|...|++++|.+.+++..+
T Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 306 (311)
T 3nf1_A 237 NKPIWMHAEEREECKGKQKDGTSFGEYGGWYKACKVDSPTVTTTLKNLGALYRRQGKFEAAETLEEAAMR 306 (311)
T ss_dssp -CCHHHHHHHHHHC-------CCSCCCC---------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhcCchhhHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 112222223344455566666677777777777778888888888888888888888888765
No 78
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.32 E-value=1.2e-10 Score=101.63 Aligned_cols=167 Identities=11% Similarity=-0.026 Sum_probs=143.9
Q ss_pred cHHHHHHHHHHhcCCHHHHHHHHhccC---CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHh
Q 007573 340 SVCNAVITMYSRCGGILDSELAFRQIH---SPNLVSWNTIIAAFAQHGHYEKALIFFSQMGLNGFDPDGITFLSLLSACG 416 (597)
Q Consensus 340 ~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~ 416 (597)
..+..+...+...|++++|...++++. +.+...+..+...+...|++++|.+.++++.+.. +.+...+..+...+.
T Consensus 9 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~ 87 (186)
T 3as5_A 9 VYYRDKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLADA-PDNVKVATVLGLTYV 87 (186)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHTTTCCTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHH
Confidence 456667788899999999999999887 3567788999999999999999999999998753 445778888889999
Q ss_pred ccCcHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHhhCC--CCCCHHHHHHHHHHHHhcCCHHHHHH
Q 007573 417 HAGKVNESMDLFELMVKVYGIIPSSEHYTCLVDILSRAGQLEKAWQITQGMP--FEADTGVWGSLLAACVINLNVELGEL 494 (597)
Q Consensus 417 ~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~g~~~~a~~ 494 (597)
..|++++|.+.++.+.+. .+.+...+..++..+...|++++|.+.++++. .+.+...+..++..+...|++++|..
T Consensus 88 ~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~ 165 (186)
T 3as5_A 88 QVQKYDLAVPLLIKVAEA--NPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQMGRHEEALP 165 (186)
T ss_dssp HHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HhcCHHHHHHHHHHHHhc--CcHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCHHHHHH
Confidence 999999999999999874 34467888899999999999999999998875 34467789999999999999999999
Q ss_pred HHHHHHhcCCCCCch
Q 007573 495 AAKKMRELDPQNSAV 509 (597)
Q Consensus 495 ~~~~~~~~~p~~~~~ 509 (597)
.++++++..|+++..
T Consensus 166 ~~~~~~~~~~~~~~~ 180 (186)
T 3as5_A 166 HFKKANELDEGASVE 180 (186)
T ss_dssp HHHHHHHHHHCCCGG
T ss_pred HHHHHHHcCCCchhh
Confidence 999999999887543
No 79
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.31 E-value=1e-10 Score=106.44 Aligned_cols=203 Identities=9% Similarity=0.011 Sum_probs=131.2
Q ss_pred CHHHHHHHHHHHhccchhHHHHHHHHHHHHhCCCCcccHHHHHHHHHHhcCCHHHHHHHHhccC---CCChhhHHHHHHH
Q 007573 303 DDATLVSVFTACSALQLLNEGRQSHVLVIRNGFEANVSVCNAVITMYSRCGGILDSELAFRQIH---SPNLVSWNTIIAA 379 (597)
Q Consensus 303 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~ 379 (597)
|...+......+...|++++|...+..+++...+++...+..+..++...|++++|+..+++.. +.+...|..+...
T Consensus 6 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 85 (228)
T 4i17_A 6 DPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYNLANAYIGKSAA 85 (228)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCSHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcchHHHHHHHHHH
Confidence 4456666666777777888888888777777643555666667777777777777777777665 3345567777777
Q ss_pred HHHcCCHHHHHHHHHHHHHCCCCCC-h-------HHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCC---hHHHHHHH
Q 007573 380 FAQHGHYEKALIFFSQMGLNGFDPD-G-------ITFLSLLSACGHAGKVNESMDLFELMVKVYGIIPS---SEHYTCLV 448 (597)
Q Consensus 380 ~~~~g~~~~A~~~~~~m~~~g~~p~-~-------~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~---~~~~~~l~ 448 (597)
+...|++++|++.+++..+. .|+ . ..|..+...+...|++++|.+.|+++.+ +.|+ ...+..+.
T Consensus 86 ~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~---~~p~~~~~~~~~~l~ 160 (228)
T 4i17_A 86 YRDMKNNQEYIATLTEGIKA--VPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATD---VTSKKWKTDALYSLG 160 (228)
T ss_dssp HHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTT---SSCHHHHHHHHHHHH
T ss_pred HHHcccHHHHHHHHHHHHHH--CCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHh---cCCCcccHHHHHHHH
Confidence 77777777777777777664 233 3 3456666666777777777777777653 3443 45566666
Q ss_pred HHHhhcCCH--HHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHH
Q 007573 449 DILSRAGQL--EKAWQITQGMPFEADTGVWGSLLAACVINLNVELGELAAKKMRELDPQNSAVYVMLSNLY 517 (597)
Q Consensus 449 ~~~~~~g~~--~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 517 (597)
.+|...|+. ++|..+ ...+...+.... ....+.+++|+..++++++++|+++.+...+..+.
T Consensus 161 ~~~~~~~~~~~~~a~~~-----~~~~~~~~~~~~--~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~i~ 224 (228)
T 4i17_A 161 VLFYNNGADVLRKATPL-----ASSNKEKYASEK--AKADAAFKKAVDYLGEAVTLSPNRTEIKQMQDQVK 224 (228)
T ss_dssp HHHHHHHHHHHHHHGGG-----TTTCHHHHHHHH--HHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhc-----ccCCHHHHHHHH--HHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHH
Confidence 666555433 222111 122233333322 23345579999999999999999988777666553
No 80
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.29 E-value=6.1e-12 Score=120.43 Aligned_cols=244 Identities=14% Similarity=0.074 Sum_probs=149.1
Q ss_pred chHHHHHHHHHHhcCCHHHHHHHHhhcCC--------C---ChhHHHHHHHHHHHcCChhHHHHHHHHhHHC------CC
Q 007573 238 VFVVTAMITGFCKVGMLENARLLFERIQP--------K---DCVSFNAMIAGYAQNGVAEEALRLFSGMIKM------DM 300 (597)
Q Consensus 238 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--------~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~------g~ 300 (597)
..++..+...+...|++++|...|+++.+ . ...++..+...|...|++++|+..+++..+. +-
T Consensus 27 ~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 106 (311)
T 3nf1_A 27 LRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKD 106 (311)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCC
Confidence 45678899999999999999999988654 2 2357888999999999999999999998764 22
Q ss_pred CC-CHHHHHHHHHHHhccchhHHHHHHHHHHHHhCCCCcccHHHHHHHHHHhcCCHHHHHHHHhccCCCChhhHHHHHHH
Q 007573 301 QP-DDATLVSVFTACSALQLLNEGRQSHVLVIRNGFEANVSVCNAVITMYSRCGGILDSELAFRQIHSPNLVSWNTIIAA 379 (597)
Q Consensus 301 ~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~ 379 (597)
.| ....+..+...+...|++++|...+..+.+.... .+..-.+.....+..+...
T Consensus 107 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~------------------------~~~~~~~~~~~~~~~la~~ 162 (311)
T 3nf1_A 107 HPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREK------------------------VLGKDHPDVAKQLNNLALL 162 (311)
T ss_dssp CHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHH------------------------HHCTTCHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHH------------------------hcCCCChHHHHHHHHHHHH
Confidence 23 2345566666777777777777777766543100 0000000112345555666
Q ss_pred HHHcCCHHHHHHHHHHHHHC------CCCCC-hHHHHHHHHHHhccCcHHHHHHHHHHhHHhc------CCCCC-h----
Q 007573 380 FAQHGHYEKALIFFSQMGLN------GFDPD-GITFLSLLSACGHAGKVNESMDLFELMVKVY------GIIPS-S---- 441 (597)
Q Consensus 380 ~~~~g~~~~A~~~~~~m~~~------g~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~------~~~p~-~---- 441 (597)
+...|++++|+++++++.+. +..|+ ..++..+...+...|++++|.+.++++.+.. ...+. .
T Consensus 163 ~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~ 242 (311)
T 3nf1_A 163 CQNQGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWM 242 (311)
T ss_dssp HHTTTCHHHHHHHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCHHH
T ss_pred HHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHH
Confidence 66666666666666666543 11222 3356666677777777777777777766421 11111 1
Q ss_pred --HHHHHHHHHHhhcCCHHHHHHHHhhCC-CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 007573 442 --EHYTCLVDILSRAGQLEKAWQITQGMP-FEA-DTGVWGSLLAACVINLNVELGELAAKKMRELDPQ 505 (597)
Q Consensus 442 --~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~ 505 (597)
..+..+...+...+.+.+|...++... ..| +..++..+...|...|++++|...+++++++.|+
T Consensus 243 ~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~~~ 310 (311)
T 3nf1_A 243 HAEEREECKGKQKDGTSFGEYGGWYKACKVDSPTVTTTLKNLGALYRRQGKFEAAETLEEAAMRSRKQ 310 (311)
T ss_dssp HHHHHHHC-------CCSCCCC---------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHhcCchhhHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhc
Confidence 112222333344455555555665554 233 3557888999999999999999999999988775
No 81
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.25 E-value=1.1e-09 Score=108.09 Aligned_cols=163 Identities=17% Similarity=0.090 Sum_probs=80.8
Q ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHC----CCCC-ChHHHHHHHHHHhccCcHHHHHHHHHHhHHhc---CCCCChHH
Q 007573 372 SWNTIIAAFAQHGHYEKALIFFSQMGLN----GFDP-DGITFLSLLSACGHAGKVNESMDLFELMVKVY---GIIPSSEH 443 (597)
Q Consensus 372 ~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~---~~~p~~~~ 443 (597)
+++.+...|...|++++|++.+++..+. +-.+ ...++..+..++...|++++|.+.+++..+.. +.+....+
T Consensus 184 ~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 263 (378)
T 3q15_A 184 SLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPKV 263 (378)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChhHHHH
Confidence 3444455555555555555555544431 1011 12344555555556666666666655554410 11112445
Q ss_pred HHHHHHHHhhcCCHHHHHHHHhhCC------CCCC-HHHHHHHHHHHHhcCC---HHHHHHHHHHHHhcCCCCCchHHHH
Q 007573 444 YTCLVDILSRAGQLEKAWQITQGMP------FEAD-TGVWGSLLAACVINLN---VELGELAAKKMRELDPQNSAVYVML 513 (597)
Q Consensus 444 ~~~l~~~~~~~g~~~~A~~~~~~~~------~~p~-~~~~~~l~~~~~~~g~---~~~a~~~~~~~~~~~p~~~~~~~~l 513 (597)
+..+...|.+.|++++|...+++.. ..|. ...+..+...+...++ +++|+..+++. ...|.....+..+
T Consensus 264 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~-~~~~~~~~~~~~l 342 (378)
T 3q15_A 264 LFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKK-NLHAYIEACARSA 342 (378)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHT-TCHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhC-CChhHHHHHHHHH
Confidence 5556666666666666666655432 1122 2234444444555555 55555555541 1112224455566
Q ss_pred HHHHHhcCCcHHHHHHHHHHHh
Q 007573 514 SNLYAAAGMWRDVTRVRLLMKE 535 (597)
Q Consensus 514 ~~~~~~~g~~~~A~~~~~~~~~ 535 (597)
+..|...|++++|.+.+++..+
T Consensus 343 a~~y~~~g~~~~A~~~~~~al~ 364 (378)
T 3q15_A 343 AAVFESSCHFEQAAAFYRKVLK 364 (378)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHH
Confidence 7777777777777776666644
No 82
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.24 E-value=3.7e-10 Score=105.04 Aligned_cols=87 Identities=10% Similarity=0.013 Sum_probs=72.3
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhcCCCC---CchHHHHHHHHHhc----------CCcHHHHHHHHHHHhCCCccCCC
Q 007573 477 GSLLAACVINLNVELGELAAKKMRELDPQN---SAVYVMLSNLYAAA----------GMWRDVTRVRLLMKEQGVTKQCA 543 (597)
Q Consensus 477 ~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~---~~~~~~l~~~~~~~----------g~~~~A~~~~~~~~~~~~~~~~~ 543 (597)
..++..+...|++++|+..++++++..|++ +.++..++.+|... |++++|.+.++++.+..+
T Consensus 152 ~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~p----- 226 (261)
T 3qky_A 152 YEAARLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIFP----- 226 (261)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHCT-----
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHCC-----
Confidence 566788999999999999999999999985 45788999999977 899999999999987543
Q ss_pred eeEEEECCEEEEEEeCCCCCcchHHHHHHHHHHHHHHhhcCCc
Q 007573 544 YSWIEIGNKVHYFLGGDMSHPCIDKIHLELKRASVQMKSVDDF 586 (597)
Q Consensus 544 ~s~~~~~~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~ 586 (597)
.+|...++...+..+...+++.+.-
T Consensus 227 ------------------~~~~~~~a~~~l~~~~~~~~~~~~~ 251 (261)
T 3qky_A 227 ------------------DSPLLRTAEELYTRARQRLTELEGD 251 (261)
T ss_dssp ------------------TCTHHHHHHHHHHHHHHHHHHHHTC
T ss_pred ------------------CChHHHHHHHHHHHHHHHHHHhhhh
Confidence 2677778888888888777766543
No 83
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.23 E-value=2.4e-10 Score=112.77 Aligned_cols=295 Identities=12% Similarity=0.031 Sum_probs=208.6
Q ss_pred hHHHHHHHH--HcCCChHHHHHHHhhcCC----CCC--CchHHHHHHHHH--HhcCCHHHHH---------HHHhhcC--
Q 007573 207 SWTVMITGY--VKNERFCEARELFYRMPD----YDK--NVFVVTAMITGF--CKVGMLENAR---------LLFERIQ-- 265 (597)
Q Consensus 207 ~~~~ll~~~--~~~g~~~~a~~~~~~~~~----~~~--~~~~~~~l~~~~--~~~g~~~~A~---------~~~~~~~-- 265 (597)
.-+.+-..| ...+++++|.++++++.+ ... +...|..++..- .-.+.++.+. ..++.+.
T Consensus 12 v~~~l~~wy~~i~~~~~~~A~~l~~~i~~~~~~~~~~~~~~~yy~l~~~r~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~ 91 (378)
T 3q15_A 12 VGVKINEWYKMIRQFSVPDAEILKAEVEQDIQQMEEDQDLLIYYSLMCFRHQLMLDYLEPGKTYGNRPTVTELLETIETP 91 (378)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHGGGBCCCHHHHHHHHHHHHHHHHHHHTCCC--------CHHHHHHHHHGG
T ss_pred HHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhhcCcccccccccchHHHHHHHhcc
Confidence 333444455 789999999999998744 222 333444443321 1112221122 4444432
Q ss_pred -CC-C-h---hHHHHHHHHHHHcCChhHHHHHHHHhHHCCC-CCC----HHHHHHHHHHHhccchhHHHHHHHHHHHHhC
Q 007573 266 -PK-D-C---VSFNAMIAGYAQNGVAEEALRLFSGMIKMDM-QPD----DATLVSVFTACSALQLLNEGRQSHVLVIRNG 334 (597)
Q Consensus 266 -~~-~-~---~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 334 (597)
.+ + . ..|......+...|++++|+..|++..+.-. .++ ...+..+...+...|+.+.|...+..+++..
T Consensus 92 ~~~~~~~l~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~ 171 (378)
T 3q15_A 92 QKKLTGLLKYYSLFFRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIY 171 (378)
T ss_dssp GHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred CCCCccHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHH
Confidence 22 1 1 1234455667889999999999999876421 123 3456677788889999999999999887642
Q ss_pred CC------CcccHHHHHHHHHHhcCCHHHHHHHHhccCC-----CC----hhhHHHHHHHHHHcCCHHHHHHHHHHHHH-
Q 007573 335 FE------ANVSVCNAVITMYSRCGGILDSELAFRQIHS-----PN----LVSWNTIIAAFAQHGHYEKALIFFSQMGL- 398 (597)
Q Consensus 335 ~~------~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~- 398 (597)
.. ....+++.+...|...|++++|...+++... ++ ..++..+...|...|++++|++.+++..+
T Consensus 172 ~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~ 251 (378)
T 3q15_A 172 QNHPLYSIRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKV 251 (378)
T ss_dssp HTSTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HhCCCchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 11 1245678899999999999999999987651 22 34778888999999999999999999886
Q ss_pred ----CCCCCChHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCC---hHHHHHHHHHHhhcCC---HHHHHHHHhhCC
Q 007573 399 ----NGFDPDGITFLSLLSACGHAGKVNESMDLFELMVKVYGIIPS---SEHYTCLVDILSRAGQ---LEKAWQITQGMP 468 (597)
Q Consensus 399 ----~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~---~~~~~~l~~~~~~~g~---~~~A~~~~~~~~ 468 (597)
.. +....++..+...+.+.|++++|...+++..+...-.++ ...+..+...|...|+ +.+|...+++..
T Consensus 252 ~~~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~~ 330 (378)
T 3q15_A 252 SREKVP-DLLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKKN 330 (378)
T ss_dssp HHHHCG-GGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHTT
T ss_pred HHhhCC-hhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhCC
Confidence 32 223667888899999999999999999998875332222 4456777778888888 899999999866
Q ss_pred CCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 007573 469 FEAD-TGVWGSLLAACVINLNVELGELAAKKMREL 502 (597)
Q Consensus 469 ~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 502 (597)
..|+ ...+..+...|...|++++|...++++++.
T Consensus 331 ~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~~ 365 (378)
T 3q15_A 331 LHAYIEACARSAAAVFESSCHFEQAAAFYRKVLKA 365 (378)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred ChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 4443 346677888899999999999999998864
No 84
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.15 E-value=8e-09 Score=101.59 Aligned_cols=264 Identities=10% Similarity=-0.044 Sum_probs=116.7
Q ss_pred HHHcCCChHHHHHHHhhcCCCCCCc------hHHHHHHHHHHhcCCHHHHHHHHhhcCC-----CCh----hHHHHHHHH
Q 007573 214 GYVKNERFCEARELFYRMPDYDKNV------FVVTAMITGFCKVGMLENARLLFERIQP-----KDC----VSFNAMIAG 278 (597)
Q Consensus 214 ~~~~~g~~~~a~~~~~~~~~~~~~~------~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~~----~~~~~li~~ 278 (597)
.+...|++++|...++......|+. .+++.+...+...|++++|...+++... .+. .++..+...
T Consensus 23 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~ 102 (373)
T 1hz4_A 23 VAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEI 102 (373)
T ss_dssp HHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH
Confidence 3444555555555555544322211 1234444555556666666655554332 111 234455566
Q ss_pred HHHcCChhHHHHHHHHhHHC----CCC--CC-HHHHHHHHHHHhccchhHHHHHHHHHHHHhCCCCcccHHHHHHHHHHh
Q 007573 279 YAQNGVAEEALRLFSGMIKM----DMQ--PD-DATLVSVFTACSALQLLNEGRQSHVLVIRNGFEANVSVCNAVITMYSR 351 (597)
Q Consensus 279 ~~~~g~~~~A~~~~~~m~~~----g~~--p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 351 (597)
+...|++++|...+++..+. +.. |. ...+..+...+...|++++|...+...++.......
T Consensus 103 ~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~------------ 170 (373)
T 1hz4_A 103 LFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQP------------ 170 (373)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCG------------
T ss_pred HHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCc------------
Confidence 66667777666666665432 111 11 112222333334444444444444444332211000
Q ss_pred cCCHHHHHHHHhccCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC-hHHHH-----HHHHHHhccCcHHHHH
Q 007573 352 CGGILDSELAFRQIHSPNLVSWNTIIAAFAQHGHYEKALIFFSQMGLNGFDPD-GITFL-----SLLSACGHAGKVNESM 425 (597)
Q Consensus 352 ~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~-----~ll~~~~~~g~~~~a~ 425 (597)
.....++..+...+...|++++|...+++.......++ ...+. ..+..+...|++++|.
T Consensus 171 ---------------~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~ 235 (373)
T 1hz4_A 171 ---------------QQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAA 235 (373)
T ss_dssp ---------------GGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred ---------------HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHH
Confidence 00112344444445555555555555555443211111 01111 1122244555566665
Q ss_pred HHHHHhHHhcCCCC--ChHHHHHHHHHHhhcCCHHHHHHHHhhCC-----C--CCCH-HHHHHHHHHHHhcCCHHHHHHH
Q 007573 426 DLFELMVKVYGIIP--SSEHYTCLVDILSRAGQLEKAWQITQGMP-----F--EADT-GVWGSLLAACVINLNVELGELA 495 (597)
Q Consensus 426 ~~~~~~~~~~~~~p--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-----~--~p~~-~~~~~l~~~~~~~g~~~~a~~~ 495 (597)
..++.......-.+ ....+..+..++...|++++|.+.+++.. . .++. ..+..+..++...|+.++|...
T Consensus 236 ~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 315 (373)
T 1hz4_A 236 NWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRV 315 (373)
T ss_dssp HHHHHSCCCCCTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHhCCCCCCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHH
Confidence 55555432110000 01234455555666666666666555442 0 0111 1344455556666777777777
Q ss_pred HHHHHhcCC
Q 007573 496 AKKMRELDP 504 (597)
Q Consensus 496 ~~~~~~~~p 504 (597)
+++++++.+
T Consensus 316 l~~al~~~~ 324 (373)
T 1hz4_A 316 LLDALKLAN 324 (373)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHhc
Confidence 666665443
No 85
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.14 E-value=5e-10 Score=106.05 Aligned_cols=187 Identities=11% Similarity=-0.005 Sum_probs=126.9
Q ss_pred HHHHhcCCHHHHHHHHhccCC-----CC----hhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCC---CCC--hHHHHHHH
Q 007573 347 TMYSRCGGILDSELAFRQIHS-----PN----LVSWNTIIAAFAQHGHYEKALIFFSQMGLNGF---DPD--GITFLSLL 412 (597)
Q Consensus 347 ~~~~~~g~~~~A~~~~~~~~~-----~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~---~p~--~~~~~~ll 412 (597)
..|...|++++|...|++... .+ ..+|+.+...|...|++++|+..+++..+... .+. ..++..+.
T Consensus 45 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg 124 (292)
T 1qqe_A 45 TIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELG 124 (292)
T ss_dssp HHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 345556666666666554431 11 34677778888888888888888877764210 111 34677888
Q ss_pred HHHhcc-CcHHHHHHHHHHhHHhcCCCCC----hHHHHHHHHHHhhcCCHHHHHHHHhhCC-CCCCH--------HHHHH
Q 007573 413 SACGHA-GKVNESMDLFELMVKVYGIIPS----SEHYTCLVDILSRAGQLEKAWQITQGMP-FEADT--------GVWGS 478 (597)
Q Consensus 413 ~~~~~~-g~~~~a~~~~~~~~~~~~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p~~--------~~~~~ 478 (597)
..+... |++++|...|++..+...-..+ ..++..+...|.+.|++++|...+++.. ..|+. ..|..
T Consensus 125 ~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~ 204 (292)
T 1qqe_A 125 EILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLK 204 (292)
T ss_dssp HHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHH
T ss_pred HHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHH
Confidence 888885 9999999999988764221111 3568888999999999999999998764 23321 15677
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcCCCCCch-----HHHHHHHHH--hcCCcHHHHHHHHHH
Q 007573 479 LLAACVINLNVELGELAAKKMRELDPQNSAV-----YVMLSNLYA--AAGMWRDVTRVRLLM 533 (597)
Q Consensus 479 l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~-----~~~l~~~~~--~~g~~~~A~~~~~~~ 533 (597)
++.++...|++++|+..++++++++|..... +..++.++. ..+++++|++.|+.+
T Consensus 205 lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~l~~l~~~~~~~~~~~~~~A~~~~~~~ 266 (292)
T 1qqe_A 205 KGLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNF 266 (292)
T ss_dssp HHHHHHHTTCHHHHHHHHHGGGCC---------HHHHHHHHHHHHTTCTTTHHHHHHHHTTS
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHhccC
Confidence 8888999999999999999999999986442 344566664 456788888887654
No 86
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.13 E-value=5.5e-10 Score=104.90 Aligned_cols=220 Identities=12% Similarity=0.124 Sum_probs=137.4
Q ss_pred ccchhHHHHHHHHHHHHh-------CCCCcccHHHHHHHHHHhcCCHHHHHHHHhccCC-----------CChhhHHHHH
Q 007573 316 ALQLLNEGRQSHVLVIRN-------GFEANVSVCNAVITMYSRCGGILDSELAFRQIHS-----------PNLVSWNTII 377 (597)
Q Consensus 316 ~~~~~~~a~~~~~~~~~~-------~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----------~~~~~~~~li 377 (597)
..|+++.|...+++.++. ..+....++..+...|...|++++|...+++... ....++..+.
T Consensus 13 ~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~ 92 (283)
T 3edt_B 13 GLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLA 92 (283)
T ss_dssp CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHH
Confidence 456666666666665542 2233456677788888888888888887776541 1234677777
Q ss_pred HHHHHcCCHHHHHHHHHHHHHC------CCCC-ChHHHHHHHHHHhccCcHHHHHHHHHHhHHhc-----CCCC-ChHHH
Q 007573 378 AAFAQHGHYEKALIFFSQMGLN------GFDP-DGITFLSLLSACGHAGKVNESMDLFELMVKVY-----GIIP-SSEHY 444 (597)
Q Consensus 378 ~~~~~~g~~~~A~~~~~~m~~~------g~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~-----~~~p-~~~~~ 444 (597)
..|...|++++|++.+++.... .-.| ...++..+...+...|++++|...++++.+.. +..| ....+
T Consensus 93 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 172 (283)
T 3edt_B 93 VLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTK 172 (283)
T ss_dssp HHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHH
T ss_pred HHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHH
Confidence 7888888888888888877653 1112 24566777777888888888888888776531 1122 24567
Q ss_pred HHHHHHHhhcCCHHHHHHHHhhCC----------CCCC-HHHHHHHHHHHHhcCC------HHHHHHHHHHHHhcCCCCC
Q 007573 445 TCLVDILSRAGQLEKAWQITQGMP----------FEAD-TGVWGSLLAACVINLN------VELGELAAKKMRELDPQNS 507 (597)
Q Consensus 445 ~~l~~~~~~~g~~~~A~~~~~~~~----------~~p~-~~~~~~l~~~~~~~g~------~~~a~~~~~~~~~~~p~~~ 507 (597)
..+...|.+.|++++|.+++++.. ..+. ...|..+.......+. +..+...++......|...
T Consensus 173 ~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 252 (283)
T 3edt_B 173 NNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKVDSPTVN 252 (283)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCCCCHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCCCCHHHH
Confidence 777788888888888888776653 1122 2233333333332222 2333333332222334446
Q ss_pred chHHHHHHHHHhcCCcHHHHHHHHHHHh
Q 007573 508 AVYVMLSNLYAAAGMWRDVTRVRLLMKE 535 (597)
Q Consensus 508 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 535 (597)
.++..++.+|...|++++|.+++++..+
T Consensus 253 ~~~~~la~~~~~~g~~~~A~~~~~~al~ 280 (283)
T 3edt_B 253 TTLRSLGALYRRQGKLEAAHTLEDCASR 280 (283)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 7789999999999999999999998875
No 87
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.13 E-value=4e-10 Score=119.20 Aligned_cols=163 Identities=12% Similarity=0.168 Sum_probs=140.8
Q ss_pred CcccHHHHHHHHHHhcCCHHHHHHHHhccC---CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC-hHHHHHHH
Q 007573 337 ANVSVCNAVITMYSRCGGILDSELAFRQIH---SPNLVSWNTIIAAFAQHGHYEKALIFFSQMGLNGFDPD-GITFLSLL 412 (597)
Q Consensus 337 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~ll 412 (597)
.+...++.|...|.+.|++++|+..|++.. +.+..+|+.+...|.+.|++++|++.|++..+. .|+ ...|..+.
T Consensus 7 ~~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l--~P~~~~a~~nLg 84 (723)
T 4gyw_A 7 THADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRI--SPTFADAYSNMG 84 (723)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHH
Confidence 345678888899999999999999998776 456788999999999999999999999999875 454 77899999
Q ss_pred HHHhccCcHHHHHHHHHHhHHhcCCCCC-hHHHHHHHHHHhhcCCHHHHHHHHhhCC-CCC-CHHHHHHHHHHHHhcCCH
Q 007573 413 SACGHAGKVNESMDLFELMVKVYGIIPS-SEHYTCLVDILSRAGQLEKAWQITQGMP-FEA-DTGVWGSLLAACVINLNV 489 (597)
Q Consensus 413 ~~~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~l~~~~~~~g~~ 489 (597)
.++...|++++|.+.|++..+. .|+ ...|..+..+|.+.|++++|++.|++.. ..| +...+..++..+...|++
T Consensus 85 ~~l~~~g~~~~A~~~~~kAl~l---~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~a~~~L~~~l~~~g~~ 161 (723)
T 4gyw_A 85 NTLKEMQDVQGALQCYTRAIQI---NPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDW 161 (723)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCC
T ss_pred HHHHHcCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHhhhhhHHHhcccH
Confidence 9999999999999999998864 454 7889999999999999999999999876 555 467899999999999999
Q ss_pred HHHHHHHHHHHhcCC
Q 007573 490 ELGELAAKKMRELDP 504 (597)
Q Consensus 490 ~~a~~~~~~~~~~~p 504 (597)
++|.+.+++++++.|
T Consensus 162 ~~A~~~~~kal~l~~ 176 (723)
T 4gyw_A 162 TDYDERMKKLVSIVA 176 (723)
T ss_dssp TTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCh
Confidence 999999999987654
No 88
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=99.10 E-value=2.2e-09 Score=87.90 Aligned_cols=127 Identities=18% Similarity=0.188 Sum_probs=78.9
Q ss_pred HHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHhhCC--CCCCHHHHHHHHHHHHhc
Q 007573 409 LSLLSACGHAGKVNESMDLFELMVKVYGIIPSSEHYTCLVDILSRAGQLEKAWQITQGMP--FEADTGVWGSLLAACVIN 486 (597)
Q Consensus 409 ~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~ 486 (597)
..+...+...|++++|..+++.+.+. .+.+...+..++..+...|++++|.++++++. .+.+...+..++..+...
T Consensus 5 ~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 82 (136)
T 2fo7_A 5 YNLGNAYYKQGDYDEAIEYYQKALEL--DPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQ 82 (136)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHcCcHHHHHHHHHHHHHc--CCcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHh
Confidence 33444444455555555555554432 11234445555555555556666655555543 223455666677777777
Q ss_pred CCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCcHHHHHHHHHHHhCC
Q 007573 487 LNVELGELAAKKMRELDPQNSAVYVMLSNLYAAAGMWRDVTRVRLLMKEQG 537 (597)
Q Consensus 487 g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 537 (597)
|++++|...++++++..|.++..+..++.++...|++++|.+.++++.+..
T Consensus 83 ~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~ 133 (136)
T 2fo7_A 83 GDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD 133 (136)
T ss_dssp TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHS
T ss_pred cCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHccHHHHHHHHHHHHccC
Confidence 777778888877777777777777777888888888888888877776543
No 89
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=99.10 E-value=6.4e-09 Score=94.13 Aligned_cols=179 Identities=10% Similarity=0.002 Sum_probs=108.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHhccC--CCC----hhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCh----HHHHH
Q 007573 341 VCNAVITMYSRCGGILDSELAFRQIH--SPN----LVSWNTIIAAFAQHGHYEKALIFFSQMGLNGFDPDG----ITFLS 410 (597)
Q Consensus 341 ~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~----~~~~~ 410 (597)
.+..+...+.+.|++++|+..|+.+. .|+ ...+..+..++.+.|++++|+..|+++.+. .|+. ..+..
T Consensus 6 ~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~--~P~~~~~~~a~~~ 83 (225)
T 2yhc_A 6 EIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRL--NPTHPNIDYVMYM 83 (225)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCTTHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH--CcCCCcHHHHHHH
Confidence 34445556666777777777776665 122 235566666677777777777777776654 2221 13333
Q ss_pred HHHHHhc------------------cCcHHHHHHHHHHhHHhcCCCCC-hHHHHHHHHHHhhcCCHHHHHHHHhhCCCCC
Q 007573 411 LLSACGH------------------AGKVNESMDLFELMVKVYGIIPS-SEHYTCLVDILSRAGQLEKAWQITQGMPFEA 471 (597)
Q Consensus 411 ll~~~~~------------------~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p 471 (597)
+..++.. .|+.++|...|+.+.+. .|+ ...+.....+. ......
T Consensus 84 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~---~P~~~~a~~a~~~l~----~~~~~~---------- 146 (225)
T 2yhc_A 84 RGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRG---YPNSQYTTDATKRLV----FLKDRL---------- 146 (225)
T ss_dssp HHHHHHHHHC--------------CCHHHHHHHHHHHHHHTT---CTTCTTHHHHHHHHH----HHHHHH----------
T ss_pred HHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHH---CcCChhHHHHHHHHH----HHHHHH----------
Confidence 3333332 34555555555555432 122 11111111000 000000
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCC---chHHHHHHHHHhcCCcHHHHHHHHHHHhCCCc
Q 007573 472 DTGVWGSLLAACVINLNVELGELAAKKMRELDPQNS---AVYVMLSNLYAAAGMWRDVTRVRLLMKEQGVT 539 (597)
Q Consensus 472 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 539 (597)
......+...+...|++++|+..++++++..|+++ .++..++.+|.+.|++++|.+.++.+...+..
T Consensus 147 -~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~~ 216 (225)
T 2yhc_A 147 -AKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSSN 216 (225)
T ss_dssp -HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCSC
T ss_pred -HHHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCC
Confidence 00113456678899999999999999999999975 67899999999999999999999999887653
No 90
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=99.09 E-value=3.4e-08 Score=91.61 Aligned_cols=40 Identities=8% Similarity=-0.118 Sum_probs=21.8
Q ss_pred HHhcCCHHHHHHHHhhcCCCChh-HHHHHHHHHHHcCChhH
Q 007573 248 FCKVGMLENARLLFERIQPKDCV-SFNAMIAGYAQNGVAEE 287 (597)
Q Consensus 248 ~~~~g~~~~A~~~~~~~~~~~~~-~~~~li~~~~~~g~~~~ 287 (597)
..-.|.+..++.-...+.+.+.. .-.-+.++|...|+++.
T Consensus 23 ~fy~G~yq~~i~e~~~~~~~~~~~~~~~~~Rs~iAlg~~~~ 63 (310)
T 3mv2_B 23 NYYTGNFVQCLQEIEKFSKVTDNTLLFYKAKTLLALGQYQS 63 (310)
T ss_dssp HHTTTCHHHHTHHHHTSSCCCCHHHHHHHHHHHHHTTCCCC
T ss_pred HHHhhHHHHHHHHHHhcCccchHHHHHHHHHHHHHcCCCcc
Confidence 33467777777655555443322 23334566776666653
No 91
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=99.07 E-value=1.4e-08 Score=94.19 Aligned_cols=160 Identities=11% Similarity=0.023 Sum_probs=103.8
Q ss_pred HHHHHHHhcCCHHHHHHHHhccCC-----CChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC-----ChHHHHHHHH
Q 007573 344 AVITMYSRCGGILDSELAFRQIHS-----PNLVSWNTIIAAFAQHGHYEKALIFFSQMGLNGFDP-----DGITFLSLLS 413 (597)
Q Consensus 344 ~l~~~~~~~g~~~~A~~~~~~~~~-----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-----~~~~~~~ll~ 413 (597)
.+..++...|++++|++++.+... .+...+..++..+.+.|+.+.|.+.+++|.+. .| +..+...+..
T Consensus 105 ~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~~--~~d~~~~~d~~l~~Lae 182 (310)
T 3mv2_B 105 LLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTNA--IEDTVSGDNEMILNLAE 182 (310)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--SCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CccccccchHHHHHHHH
Confidence 344455555666666666555421 24456667777888888888888888888764 55 3455555554
Q ss_pred H--Hhc--cCcHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHhhCCC-----------CC-CHHHHH
Q 007573 414 A--CGH--AGKVNESMDLFELMVKVYGIIPSSEHYTCLVDILSRAGQLEKAWQITQGMPF-----------EA-DTGVWG 477 (597)
Q Consensus 414 ~--~~~--~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----------~p-~~~~~~ 477 (597)
+ ... .++..+|..+|+++... .|+...-..+..++.+.|++++|++.++.+.. .| ++.++.
T Consensus 183 a~v~l~~g~~~~q~A~~~f~El~~~---~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~~~~p~~~~k~~~~p~~~~~La 259 (310)
T 3mv2_B 183 SYIKFATNKETATSNFYYYEELSQT---FPTWKTQLGLLNLHLQQRNIAEAQGIVELLLSDYYSVEQKENAVLYKPTFLA 259 (310)
T ss_dssp HHHHHHHTCSTTTHHHHHHHHHHTT---SCSHHHHHHHHHHHHHHTCHHHHHHHHHHHHSHHHHTTTCHHHHSSHHHHHH
T ss_pred HHHHHHhCCccHHHHHHHHHHHHHh---CCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccccccCCCCCHHHHH
Confidence 4 222 33788888888887643 34433333444477888888888888875431 24 455665
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchH
Q 007573 478 SLLAACVINLNVELGELAAKKMRELDPQNSAVY 510 (597)
Q Consensus 478 ~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~ 510 (597)
.++......|+ +|.++++++.+..|++|.+.
T Consensus 260 N~i~l~~~lgk--~a~~l~~qL~~~~P~hp~i~ 290 (310)
T 3mv2_B 260 NQITLALMQGL--DTEDLTNQLVKLDHEHAFIK 290 (310)
T ss_dssp HHHHHHHHTTC--TTHHHHHHHHHTTCCCHHHH
T ss_pred HHHHHHHHhCh--HHHHHHHHHHHhCCCChHHH
Confidence 66666666676 78889999999999887654
No 92
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.07 E-value=2.8e-09 Score=99.08 Aligned_cols=187 Identities=9% Similarity=-0.010 Sum_probs=131.7
Q ss_pred cccHHHHHHHHHHhcCCHHHHHHHHhccC--CC-C---hhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCC-CCC-hHHHH
Q 007573 338 NVSVCNAVITMYSRCGGILDSELAFRQIH--SP-N---LVSWNTIIAAFAQHGHYEKALIFFSQMGLNGF-DPD-GITFL 409 (597)
Q Consensus 338 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~-~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~-~~~~~ 409 (597)
+...+..+...+.+.|++++|...|+.+. .| + ...+..+..+|...|++++|+..|++..+... .|. ...+.
T Consensus 14 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~ 93 (261)
T 3qky_A 14 SPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAEY 93 (261)
T ss_dssp SHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHH
T ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHHH
Confidence 34455566677777888888888888775 22 3 45677778888888888888888888876521 122 34566
Q ss_pred HHHHHHhc--------cCcHHHHHHHHHHhHHhcCCCCChH-HH--------------HHHHHHHhhcCCHHHHHHHHhh
Q 007573 410 SLLSACGH--------AGKVNESMDLFELMVKVYGIIPSSE-HY--------------TCLVDILSRAGQLEKAWQITQG 466 (597)
Q Consensus 410 ~ll~~~~~--------~g~~~~a~~~~~~~~~~~~~~p~~~-~~--------------~~l~~~~~~~g~~~~A~~~~~~ 466 (597)
.+..++.. .|++++|...|+++.+.+.-.+... .. ..+...|.+.|++++|...+++
T Consensus 94 ~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 173 (261)
T 3qky_A 94 ERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPNHELVDDATQKIRELRAKLARKQYEAARLYERRELYEAAAVTYEA 173 (261)
T ss_dssp HHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHH
Confidence 66677777 8888888888888877532222211 11 5668889999999999999988
Q ss_pred CC-CCCC----HHHHHHHHHHHHhc----------CCHHHHHHHHHHHHhcCCCCCc---hHHHHHHHHHhcCCcH
Q 007573 467 MP-FEAD----TGVWGSLLAACVIN----------LNVELGELAAKKMRELDPQNSA---VYVMLSNLYAAAGMWR 524 (597)
Q Consensus 467 ~~-~~p~----~~~~~~l~~~~~~~----------g~~~~a~~~~~~~~~~~p~~~~---~~~~l~~~~~~~g~~~ 524 (597)
+. ..|+ ...+..++.++... |++++|+..++++++..|+++. +...+..++...|+++
T Consensus 174 ~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~l~~~~~~~~~~~ 249 (261)
T 3qky_A 174 VFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIFPDSPLLRTAEELYTRARQRLTELE 249 (261)
T ss_dssp HHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHHHHhh
Confidence 75 3343 34677788888765 8999999999999999999864 3444555554444443
No 93
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=99.06 E-value=3.1e-09 Score=100.12 Aligned_cols=177 Identities=10% Similarity=-0.087 Sum_probs=140.5
Q ss_pred HHHHHHHHhccCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHhccCcHHHHHHHHHHhHHh
Q 007573 355 ILDSELAFRQIHSPNLVSWNTIIAAFAQHGHYEKALIFFSQMGLNGFDPDGITFLSLLSACGHAGKVNESMDLFELMVKV 434 (597)
Q Consensus 355 ~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 434 (597)
.+.....+....+.+...+..+...+...|++++|+..|++..+.. +-+...+..+...+...|++++|...++.+...
T Consensus 102 ~~~l~~~l~~~lp~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~ 180 (287)
T 3qou_A 102 EEAIRALLDXVLPREEELXAQQAMQLMQESNYTDALPLLXDAWQLS-NQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQ 180 (287)
T ss_dssp HHHHHHHHHHHSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGG
T ss_pred HHHHHHHHHHHcCCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhC-CcchhHHHHHHHHHHHCCCHHHHHHHHHhCchh
Confidence 3344455555555566677788888899999999999999988752 334677888889999999999999999988653
Q ss_pred cCCCCChHHHH-HHHHHHhhcCCHHHHHHHHhhCC-CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC--Cch
Q 007573 435 YGIIPSSEHYT-CLVDILSRAGQLEKAWQITQGMP-FEA-DTGVWGSLLAACVINLNVELGELAAKKMRELDPQN--SAV 509 (597)
Q Consensus 435 ~~~~p~~~~~~-~l~~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~--~~~ 509 (597)
.|+..... .....+.+.++.++|.+.+++.. ..| +...+..+...+...|++++|+..++++++.+|++ ..+
T Consensus 181 ---~p~~~~~~~~~~~~l~~~~~~~~a~~~l~~al~~~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a 257 (287)
T 3qou_A 181 ---DQDTRYQGLVAQIELLXQAADTPEIQQLQQQVAENPEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQT 257 (287)
T ss_dssp ---GCSHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHH
T ss_pred ---hcchHHHHHHHHHHHHhhcccCccHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchH
Confidence 45544332 23334667788888888887765 344 67789999999999999999999999999999998 889
Q ss_pred HHHHHHHHHhcCCcHHHHHHHHHHHh
Q 007573 510 YVMLSNLYAAAGMWRDVTRVRLLMKE 535 (597)
Q Consensus 510 ~~~l~~~~~~~g~~~~A~~~~~~~~~ 535 (597)
+..++.++...|+.++|...+++...
T Consensus 258 ~~~l~~~~~~~g~~~~a~~~~r~al~ 283 (287)
T 3qou_A 258 RXTFQEILAALGTGDALASXYRRQLY 283 (287)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCCcHHHHHHHHHH
Confidence 99999999999999999999887654
No 94
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=99.05 E-value=6.3e-09 Score=85.14 Aligned_cols=132 Identities=17% Similarity=0.248 Sum_probs=107.8
Q ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChHHHHHHHHHH
Q 007573 372 SWNTIIAAFAQHGHYEKALIFFSQMGLNGFDPDGITFLSLLSACGHAGKVNESMDLFELMVKVYGIIPSSEHYTCLVDIL 451 (597)
Q Consensus 372 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~ 451 (597)
.|..+...+...|++++|..+++++.+.. +.+...+..+...+...|++++|...++++.+. .+.+...+..++..+
T Consensus 3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~ 79 (136)
T 2fo7_A 3 AWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALEL--DPRSAEAWYNLGNAY 79 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHcC-CcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHH--CCCchHHHHHHHHHH
Confidence 56677788888899999999998887653 345667777888888889999999999988764 234567788888999
Q ss_pred hhcCCHHHHHHHHhhCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC
Q 007573 452 SRAGQLEKAWQITQGMP--FEADTGVWGSLLAACVINLNVELGELAAKKMRELDPQN 506 (597)
Q Consensus 452 ~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~ 506 (597)
...|++++|.+.++++. .+.+...+..++..+...|++++|...++++++.+|++
T Consensus 80 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~ 136 (136)
T 2fo7_A 80 YKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRS 136 (136)
T ss_dssp HTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHSTTC
T ss_pred HHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHccHHHHHHHHHHHHccCCCC
Confidence 99999999999998765 33467788889999999999999999999999988863
No 95
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.05 E-value=4.4e-09 Score=99.45 Aligned_cols=221 Identities=13% Similarity=0.003 Sum_probs=134.3
Q ss_pred CHHHHHHHHhhcCCCChhHHHHHHHHHHHcCChhHHHHHHHHhHHC----CCCCC-HHHHHHHHHHHhccchhHHHHHHH
Q 007573 253 MLENARLLFERIQPKDCVSFNAMIAGYAQNGVAEEALRLFSGMIKM----DMQPD-DATLVSVFTACSALQLLNEGRQSH 327 (597)
Q Consensus 253 ~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~p~-~~~~~~ll~~~~~~~~~~~a~~~~ 327 (597)
++++|...|++. +..|...|++++|+..|.+..+. |-.++ ..++..+..++...|++++|...+
T Consensus 32 ~~~~A~~~~~~a-----------~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~ 100 (292)
T 1qqe_A 32 KFEEAADLCVQA-----------ATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSL 100 (292)
T ss_dssp HHHHHHHHHHHH-----------HHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred cHHHHHHHHHHH-----------HHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 477777766554 66777888888888888776542 11111 223444444444444444444444
Q ss_pred HHHHHhCCCCcccHHHHHHHHHHhcCCHHHHHHHHhccCCCChhhHHHHHHHHHHc-CCHHHHHHHHHHHHHCCCC-CC-
Q 007573 328 VLVIRNGFEANVSVCNAVITMYSRCGGILDSELAFRQIHSPNLVSWNTIIAAFAQH-GHYEKALIFFSQMGLNGFD-PD- 404 (597)
Q Consensus 328 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~-g~~~~A~~~~~~m~~~g~~-p~- 404 (597)
+..++. +...|+...+ ..+++.+...|... |++++|+..|++..+.... .+
T Consensus 101 ~~Al~l---------------~~~~g~~~~~-----------a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~ 154 (292)
T 1qqe_A 101 ENAIQI---------------FTHRGQFRRG-----------ANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSV 154 (292)
T ss_dssp HHHHHH---------------HHHTTCHHHH-----------HHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHH---------------HHHcCCHHHH-----------HHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCCh
Confidence 433321 1111111111 23567777788885 8888888888887653110 01
Q ss_pred ---hHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCCh-----HHHHHHHHHHhhcCCHHHHHHHHhhCC-CCCCHH-
Q 007573 405 ---GITFLSLLSACGHAGKVNESMDLFELMVKVYGIIPSS-----EHYTCLVDILSRAGQLEKAWQITQGMP-FEADTG- 474 (597)
Q Consensus 405 ---~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~-----~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p~~~- 474 (597)
..++..+...+...|++++|...|+++.+...-.+.. ..|..+..++...|++++|...+++.. ..|+..
T Consensus 155 ~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~ 234 (292)
T 1qqe_A 155 ALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFAD 234 (292)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC------
T ss_pred HHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCC
Confidence 3467778888888899999999998887642212221 156777888888999999999988865 444321
Q ss_pred -----HHHHHHHHHH--hcCCHHHHHHHHHHHHhcCCCCCchH
Q 007573 475 -----VWGSLLAACV--INLNVELGELAAKKMRELDPQNSAVY 510 (597)
Q Consensus 475 -----~~~~l~~~~~--~~g~~~~a~~~~~~~~~~~p~~~~~~ 510 (597)
.+..++.++. ..+++++|+..|+++.+++|.....+
T Consensus 235 ~~~~~~l~~l~~~~~~~~~~~~~~A~~~~~~~~~l~~~~~~~~ 277 (292)
T 1qqe_A 235 SRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFMRLDKWKITIL 277 (292)
T ss_dssp ---HHHHHHHHHHHHTTCTTTHHHHHHHHTTSSCCCHHHHHHH
T ss_pred cHHHHHHHHHHHHHHcCCHHHHHHHHHHhccCCccHHHHHHHH
Confidence 3444555554 45678888888888888877654333
No 96
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=99.04 E-value=6e-10 Score=93.62 Aligned_cols=120 Identities=10% Similarity=0.005 Sum_probs=67.5
Q ss_pred HHHhccCcHHHHHHHHHHhHHhcCCCCC-hHHHHHHHHHHhhcCCHHHHHHHHhhCC-CCC-CHHHHHHHHHHHHhcCCH
Q 007573 413 SACGHAGKVNESMDLFELMVKVYGIIPS-SEHYTCLVDILSRAGQLEKAWQITQGMP-FEA-DTGVWGSLLAACVINLNV 489 (597)
Q Consensus 413 ~~~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~l~~~~~~~g~~ 489 (597)
..+...|++++|++.++... ...|+ ...+-.+...|.+.|++++|++.|++.. ..| +..+|..++.++...|++
T Consensus 5 ~~~~~~~~~e~ai~~~~~a~---~~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~ 81 (150)
T 4ga2_A 5 SMRRSKADVERYIASVQGST---PSPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQERDPKAHRFLGLLYELEENT 81 (150)
T ss_dssp --CCCHHHHHHHHHHHHHHS---CSHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHcChHHHHHHHHHHhc---ccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCch
Confidence 33445555666665555443 22232 3334455666666666666666666544 333 455666666666666666
Q ss_pred HHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCcHHHHHH-HHHHHh
Q 007573 490 ELGELAAKKMRELDPQNSAVYVMLSNLYAAAGMWRDVTRV-RLLMKE 535 (597)
Q Consensus 490 ~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~-~~~~~~ 535 (597)
++|+..++++++++|+++.++..++.+|.+.|++++|.+. +++..+
T Consensus 82 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~ 128 (150)
T 4ga2_A 82 DKAVECYRRSVELNPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAK 128 (150)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence 6666666666666666666666666666666666555443 355443
No 97
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=99.03 E-value=2.6e-10 Score=95.85 Aligned_cols=139 Identities=11% Similarity=0.017 Sum_probs=105.8
Q ss_pred HHHHcCCHHHHHHHHHHHHHCCCCCC-hHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCC-ChHHHHHHHHHHhhcCC
Q 007573 379 AFAQHGHYEKALIFFSQMGLNGFDPD-GITFLSLLSACGHAGKVNESMDLFELMVKVYGIIP-SSEHYTCLVDILSRAGQ 456 (597)
Q Consensus 379 ~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~ 456 (597)
.+...|++++|++.+.+.... .|+ ...+..+...|.+.|++++|.+.|++..+. .| +...|..+..+|.+.|+
T Consensus 6 ~~~~~~~~e~ai~~~~~a~~~--~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~---~p~~~~a~~~lg~~~~~~~~ 80 (150)
T 4ga2_A 6 MRRSKADVERYIASVQGSTPS--PRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINV---QERDPKAHRFLGLLYELEEN 80 (150)
T ss_dssp -CCCHHHHHHHHHHHHHHSCS--HHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHcChHHHHHHHHHHhccc--CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHcCc
Confidence 344556777777777776542 333 334556777788888888888888887754 34 47788888888888888
Q ss_pred HHHHHHHHhhCC-CCC-CHHHHHHHHHHHHhcCCHHHHHH-HHHHHHhcCCCCCchHHHHHHHHHhcCC
Q 007573 457 LEKAWQITQGMP-FEA-DTGVWGSLLAACVINLNVELGEL-AAKKMRELDPQNSAVYVMLSNLYAAAGM 522 (597)
Q Consensus 457 ~~~A~~~~~~~~-~~p-~~~~~~~l~~~~~~~g~~~~a~~-~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 522 (597)
+++|...|++.. ..| +..+|..+...+...|++++|.. .++++++++|+++.+|.....++...|+
T Consensus 81 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P~~~~~~~l~~~ll~~~G~ 149 (150)
T 4ga2_A 81 TDKAVECYRRSVELNPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLFPGSPAVYKLKEQLLDCEGE 149 (150)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHSTTCHHHHHHHHHHHHTCCC
T ss_pred hHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCc
Confidence 888888888765 455 57789999999999999877665 4699999999999999999999888875
No 98
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=99.02 E-value=3.8e-08 Score=87.99 Aligned_cols=162 Identities=13% Similarity=0.035 Sum_probs=135.9
Q ss_pred CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHhccC----cHHHHHHHHHHhHHhcCCCCChH
Q 007573 367 SPNLVSWNTIIAAFAQHGHYEKALIFFSQMGLNGFDPDGITFLSLLSACGHAG----KVNESMDLFELMVKVYGIIPSSE 442 (597)
Q Consensus 367 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g----~~~~a~~~~~~~~~~~~~~p~~~ 442 (597)
..++.++..+...|...+++++|+++|++..+.| +...+..+...+.. + +.++|.+.|++..+. -++.
T Consensus 15 ~g~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~~~----g~~~ 86 (212)
T 3rjv_A 15 AGDRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQLAEKAVEA----GSKS 86 (212)
T ss_dssp TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHHHT----TCHH
T ss_pred CCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHHHC----CCHH
Confidence 3567778888888888999999999999998865 56677777777877 6 899999999998763 3577
Q ss_pred HHHHHHHHHhh----cCCHHHHHHHHhhCC-CCCC---HHHHHHHHHHHHh----cCCHHHHHHHHHHHHhcCCCCCchH
Q 007573 443 HYTCLVDILSR----AGQLEKAWQITQGMP-FEAD---TGVWGSLLAACVI----NLNVELGELAAKKMRELDPQNSAVY 510 (597)
Q Consensus 443 ~~~~l~~~~~~----~g~~~~A~~~~~~~~-~~p~---~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~p~~~~~~ 510 (597)
.+..|...|.. .+++++|.+.+++.. ..|+ +..+..|...|.. .++.++|+..++++.+. |.++..+
T Consensus 87 a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~-~~~~~a~ 165 (212)
T 3rjv_A 87 GEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSSSL-SRTGYAE 165 (212)
T ss_dssp HHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHT-SCTTHHH
T ss_pred HHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHc-CCCHHHH
Confidence 88888888887 889999999999876 4443 7788899999888 88999999999999998 6677889
Q ss_pred HHHHHHHHhc-C-----CcHHHHHHHHHHHhCC
Q 007573 511 VMLSNLYAAA-G-----MWRDVTRVRLLMKEQG 537 (597)
Q Consensus 511 ~~l~~~~~~~-g-----~~~~A~~~~~~~~~~~ 537 (597)
..|+.+|... | ++++|.+++++..+.|
T Consensus 166 ~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g 198 (212)
T 3rjv_A 166 YWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEG 198 (212)
T ss_dssp HHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcC
Confidence 9999999875 3 8999999999998876
No 99
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=99.02 E-value=8.4e-10 Score=117.33 Aligned_cols=168 Identities=12% Similarity=-0.012 Sum_probs=88.9
Q ss_pred hccchhHHHHHHHHHHH--------HhCCCCcccHHHHHHHHHHhcCCHHHHHHHHhccC---CCChhhHHHHHHHHHHc
Q 007573 315 SALQLLNEGRQSHVLVI--------RNGFEANVSVCNAVITMYSRCGGILDSELAFRQIH---SPNLVSWNTIIAAFAQH 383 (597)
Q Consensus 315 ~~~~~~~~a~~~~~~~~--------~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~ 383 (597)
...|+.++|...++.++ +.. +.+...+..+...|.+.|++++|+..|++.. +.+...|..+...+...
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~ 480 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDF-SESVELPLMEVRALLDLGDVAKATRKLDDLAERVGWRWRLVWYRAVAELLT 480 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CC-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhccccccccc-ccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcchHHHHHHHHHHHHHc
Confidence 45566666666666655 221 3344555555566666666666666665554 34445555555566666
Q ss_pred CCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHH
Q 007573 384 GHYEKALIFFSQMGLNGFDPDGITFLSLLSACGHAGKVNESMDLFELMVKVYGIIPSSEHYTCLVDILSRAGQLEKAWQI 463 (597)
Q Consensus 384 g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~ 463 (597)
|++++|++.|++..+.. +-+...+..+..++.+.|++++ .+.|+++.+. -+.+...|..+..+|.+.|++++|.+.
T Consensus 481 g~~~~A~~~~~~al~l~-P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~--~P~~~~a~~~lg~~~~~~g~~~~A~~~ 556 (681)
T 2pzi_A 481 GDYDSATKHFTEVLDTF-PGELAPKLALAATAELAGNTDE-HKFYQTVWST--NDGVISAAFGLARARSAEGDRVGAVRT 556 (681)
T ss_dssp TCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCChHH-HHHHHHHHHh--CCchHHHHHHHHHHHHHcCCHHHHHHH
Confidence 66666666666655432 2234455555555566666666 6566555542 112244555556666666666666666
Q ss_pred HhhCC-CCCC-HHHHHHHHHHHHhcC
Q 007573 464 TQGMP-FEAD-TGVWGSLLAACVINL 487 (597)
Q Consensus 464 ~~~~~-~~p~-~~~~~~l~~~~~~~g 487 (597)
+++.. ..|+ ...+..+..++...+
T Consensus 557 ~~~al~l~P~~~~a~~~~~~~~~~~~ 582 (681)
T 2pzi_A 557 LDEVPPTSRHFTTARLTSAVTLLSGR 582 (681)
T ss_dssp HHTSCTTSTTHHHHHHHHHHHTC---
T ss_pred HHhhcccCcccHHHHHHHHHHHHccC
Confidence 65554 4444 334555555544433
No 100
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=98.99 E-value=3.1e-09 Score=88.79 Aligned_cols=102 Identities=9% Similarity=-0.052 Sum_probs=90.7
Q ss_pred CCCCC-hHHHHHHHHHHhhcCCHHHHHHHHhhCC-CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHH
Q 007573 436 GIIPS-SEHYTCLVDILSRAGQLEKAWQITQGMP-FEA-DTGVWGSLLAACVINLNVELGELAAKKMRELDPQNSAVYVM 512 (597)
Q Consensus 436 ~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~ 512 (597)
.+.|+ ...+..+...+.+.|++++|.+.|++.. ..| +...|..+..++...|++++|+..|+++++++|+++.++..
T Consensus 30 ~l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~~~~~~~ 109 (151)
T 3gyz_A 30 AIPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTPVFH 109 (151)
T ss_dssp CSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSCCHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCCcHHHHH
Confidence 44554 5677788888999999999999998876 444 67899999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCcHHHHHHHHHHHhCC
Q 007573 513 LSNLYAAAGMWRDVTRVRLLMKEQG 537 (597)
Q Consensus 513 l~~~~~~~g~~~~A~~~~~~~~~~~ 537 (597)
++.+|...|++++|.+.|++..+..
T Consensus 110 lg~~~~~lg~~~eA~~~~~~al~l~ 134 (151)
T 3gyz_A 110 TGQCQLRLKAPLKAKECFELVIQHS 134 (151)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 9999999999999999999998754
No 101
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=98.99 E-value=3e-09 Score=92.17 Aligned_cols=76 Identities=7% Similarity=-0.137 Sum_probs=62.9
Q ss_pred HHHHHhhCC-CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC--CchHHHHHHHHHhcCCcHHHHHHHHHHHh
Q 007573 460 AWQITQGMP-FEA-DTGVWGSLLAACVINLNVELGELAAKKMRELDPQN--SAVYVMLSNLYAAAGMWRDVTRVRLLMKE 535 (597)
Q Consensus 460 A~~~~~~~~-~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 535 (597)
|...+++.. ..| +...+..+...+...|++++|+..++++++.+|++ +..+..++.++...|+.++|...|++...
T Consensus 93 a~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~~~y~~al~ 172 (176)
T 2r5s_A 93 ELKRLEQELAANPDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIASKYRRQLY 172 (176)
T ss_dssp HHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHHHHHHHHHH
Confidence 455555443 345 57788889999999999999999999999999875 56899999999999999999999988754
No 102
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=98.97 E-value=3.5e-09 Score=88.55 Aligned_cols=102 Identities=15% Similarity=0.036 Sum_probs=88.1
Q ss_pred CCCCC-hHHHHHHHHHHhhcCCHHHHHHHHhhCC-CC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHH
Q 007573 436 GIIPS-SEHYTCLVDILSRAGQLEKAWQITQGMP-FE-ADTGVWGSLLAACVINLNVELGELAAKKMRELDPQNSAVYVM 512 (597)
Q Consensus 436 ~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~-p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~ 512 (597)
.+.|+ ...+..+...+.+.|++++|...|++.. .. .+...|..+..++...|++++|+..++++++++|+++.++..
T Consensus 15 ~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~ 94 (148)
T 2vgx_A 15 EISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIXEPRFPFH 94 (148)
T ss_dssp TCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHH
T ss_pred cCCHhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHH
Confidence 34443 5567778888999999999999998865 34 467789999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCcHHHHHHHHHHHhCC
Q 007573 513 LSNLYAAAGMWRDVTRVRLLMKEQG 537 (597)
Q Consensus 513 l~~~~~~~g~~~~A~~~~~~~~~~~ 537 (597)
++.+|...|++++|.+.+++..+..
T Consensus 95 lg~~~~~~g~~~~A~~~~~~al~~~ 119 (148)
T 2vgx_A 95 AAECLLQXGELAEAESGLFLAQELI 119 (148)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 9999999999999999999987754
No 103
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=98.97 E-value=6.7e-09 Score=97.41 Aligned_cols=200 Identities=13% Similarity=0.089 Sum_probs=116.7
Q ss_pred hhHHHHHHHHHHHcCChhHHHHHHHHhHHC------CCCCCHHHHHHHHHHHhccchhHHHHHHHHHHHHhCCCCcccHH
Q 007573 269 CVSFNAMIAGYAQNGVAEEALRLFSGMIKM------DMQPDDATLVSVFTACSALQLLNEGRQSHVLVIRNGFEANVSVC 342 (597)
Q Consensus 269 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~------g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 342 (597)
..++..+...|...|++++|+..+++..+. +-.|. ...++
T Consensus 43 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~----------------------------------~~~~~ 88 (283)
T 3edt_B 43 ATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPA----------------------------------VAATL 88 (283)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHH----------------------------------HHHHH
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchH----------------------------------HHHHH
Confidence 346677777777777777777777776643 11111 12234
Q ss_pred HHHHHHHHhcCCHHHHHHHHhccC-----------CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHC------CCCCC-
Q 007573 343 NAVITMYSRCGGILDSELAFRQIH-----------SPNLVSWNTIIAAFAQHGHYEKALIFFSQMGLN------GFDPD- 404 (597)
Q Consensus 343 ~~l~~~~~~~g~~~~A~~~~~~~~-----------~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~------g~~p~- 404 (597)
..+...|...|++++|...+++.. +....++..+...+...|++++|++.++++.+. +-.|+
T Consensus 89 ~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 168 (283)
T 3edt_B 89 NNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNV 168 (283)
T ss_dssp HHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHH
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHH
Confidence 444444445555555544444332 112345666777777788888888888777653 11222
Q ss_pred hHHHHHHHHHHhccCcHHHHHHHHHHhHHhc------CCCCC-hHHHHHHHHHHhhc------CCHHHHHHHHhhCC-CC
Q 007573 405 GITFLSLLSACGHAGKVNESMDLFELMVKVY------GIIPS-SEHYTCLVDILSRA------GQLEKAWQITQGMP-FE 470 (597)
Q Consensus 405 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~------~~~p~-~~~~~~l~~~~~~~------g~~~~A~~~~~~~~-~~ 470 (597)
..++..+..++...|++++|..+++++.+.. ...+. ...+..+...+... ..+.++...++... ..
T Consensus 169 ~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 248 (283)
T 3edt_B 169 AKTKNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKVDS 248 (283)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCCCC
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCCCC
Confidence 4567777888888888888888888876531 11222 23333333333332 23455555555554 22
Q ss_pred CC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 007573 471 AD-TGVWGSLLAACVINLNVELGELAAKKMREL 502 (597)
Q Consensus 471 p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 502 (597)
|+ ..++..+...+...|++++|...++++++.
T Consensus 249 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 281 (283)
T 3edt_B 249 PTVNTTLRSLGALYRRQGKLEAAHTLEDCASRN 281 (283)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 32 447888899999999999999999999875
No 104
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=98.97 E-value=7.1e-09 Score=83.92 Aligned_cols=99 Identities=11% Similarity=0.052 Sum_probs=67.7
Q ss_pred CCCC-hHHHHHHHHHHhhcCCHHHHHHHHhhCC-CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHH
Q 007573 437 IIPS-SEHYTCLVDILSRAGQLEKAWQITQGMP-FEA-DTGVWGSLLAACVINLNVELGELAAKKMRELDPQNSAVYVML 513 (597)
Q Consensus 437 ~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l 513 (597)
+.|+ ...+......|.+.|++++|++.|++.. ..| +...|..+..++...|++++|+..++++++++|+++.+|..+
T Consensus 8 inP~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~l 87 (126)
T 4gco_A 8 INPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGYIRK 87 (126)
T ss_dssp CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHHHHH
Confidence 3344 3455556666777777777777776654 233 456677777777777777777777777777777777777777
Q ss_pred HHHHHhcCCcHHHHHHHHHHHh
Q 007573 514 SNLYAAAGMWRDVTRVRLLMKE 535 (597)
Q Consensus 514 ~~~~~~~g~~~~A~~~~~~~~~ 535 (597)
+.+|...|++++|++.|++..+
T Consensus 88 g~~~~~~~~~~~A~~~~~~al~ 109 (126)
T 4gco_A 88 AACLVAMREWSKAQRAYEDALQ 109 (126)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHH
Confidence 7777777777777777777665
No 105
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=98.96 E-value=9.1e-09 Score=107.44 Aligned_cols=160 Identities=13% Similarity=-0.013 Sum_probs=125.2
Q ss_pred cCCHHHHHHHHhccC---CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHhccCcHHHHHHHH
Q 007573 352 CGGILDSELAFRQIH---SPNLVSWNTIIAAFAQHGHYEKALIFFSQMGLNGFDPDGITFLSLLSACGHAGKVNESMDLF 428 (597)
Q Consensus 352 ~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~ 428 (597)
.|++++|...+++.. +.+...|..+...+...|++++|++.+++..+.. +.+...+..+..++...|++++|.+.+
T Consensus 2 ~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~ 80 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALH-PGHPEAVARLGRVRWTQQRHAEAAVLL 80 (568)
T ss_dssp -------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTS-TTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 478899999998876 4557789999999999999999999999998753 335778888999999999999999999
Q ss_pred HHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHhhCC-CCC-CHHHHHHHHHHHHhc---CCHHHHHHHHHHHHhcC
Q 007573 429 ELMVKVYGIIPSSEHYTCLVDILSRAGQLEKAWQITQGMP-FEA-DTGVWGSLLAACVIN---LNVELGELAAKKMRELD 503 (597)
Q Consensus 429 ~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~l~~~~~~~---g~~~~a~~~~~~~~~~~ 503 (597)
++..+. .+.+...+..+..+|.+.|++++|.+.+++.. ..| +...+..+...+... |+.++|...++++++.+
T Consensus 81 ~~al~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~~ 158 (568)
T 2vsy_A 81 QQASDA--APEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQG 158 (568)
T ss_dssp HHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHHT
T ss_pred HHHHhc--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhcC
Confidence 999875 23347889999999999999999999998875 344 577889999999999 99999999999999999
Q ss_pred CCCCchHHHHH
Q 007573 504 PQNSAVYVMLS 514 (597)
Q Consensus 504 p~~~~~~~~l~ 514 (597)
|.+...+..++
T Consensus 159 p~~~~~~~~l~ 169 (568)
T 2vsy_A 159 VGAVEPFAFLS 169 (568)
T ss_dssp CCCSCHHHHTT
T ss_pred CcccChHHHhC
Confidence 99988887776
No 106
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=98.94 E-value=2.4e-08 Score=89.09 Aligned_cols=156 Identities=10% Similarity=0.053 Sum_probs=77.7
Q ss_pred HHHHHHhcCCHHHHHHHHhccCC--C-ChhhHHH----------------HHHHHHHcCCHHHHHHHHHHHHHCCCCCCh
Q 007573 345 VITMYSRCGGILDSELAFRQIHS--P-NLVSWNT----------------IIAAFAQHGHYEKALIFFSQMGLNGFDPDG 405 (597)
Q Consensus 345 l~~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~----------------li~~~~~~g~~~~A~~~~~~m~~~g~~p~~ 405 (597)
....+...|++++|+..|++... | +...|.. +...|...|++++|+..|++..+.. +-+.
T Consensus 10 ~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~ 88 (208)
T 3urz_A 10 KVSAAIEAGQNGQAVSYFRQTIALNIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQKA-PNNV 88 (208)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC-CCCH
Confidence 33445566666666666666542 2 2334444 5555555666666666666555432 2234
Q ss_pred HHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCC-ChHHHHHHHHHHhhcCC--HHHHHHHHhhCCCCCCH--HHHHHHH
Q 007573 406 ITFLSLLSACGHAGKVNESMDLFELMVKVYGIIP-SSEHYTCLVDILSRAGQ--LEKAWQITQGMPFEADT--GVWGSLL 480 (597)
Q Consensus 406 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~--~~~A~~~~~~~~~~p~~--~~~~~l~ 480 (597)
..+..+..++...|++++|...|+++.+. .| +...+..+...|...|. .+.+...++... .|+. ..+..+.
T Consensus 89 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~---~P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~a~~~~g 164 (208)
T 3urz_A 89 DCLEACAEMQVCRGQEKDALRMYEKILQL---EADNLAANIFLGNYYYLTAEQEKKKLETDYKKLS-SPTKMQYARYRDG 164 (208)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHHHHHHHHHHHHHHC----CCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHc---CCCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHh-CCCchhHHHHHHH
Confidence 45555555555666666666666655542 23 24455555555544432 233344444433 2222 2233334
Q ss_pred HHHHhcCCHHHHHHHHHHHHhcCCC
Q 007573 481 AACVINLNVELGELAAKKMRELDPQ 505 (597)
Q Consensus 481 ~~~~~~g~~~~a~~~~~~~~~~~p~ 505 (597)
.++...|++++|+..+++++++.|+
T Consensus 165 ~~~~~~~~~~~A~~~~~~al~l~P~ 189 (208)
T 3urz_A 165 LSKLFTTRYEKARNSLQKVILRFPS 189 (208)
T ss_dssp HHHHHHHTHHHHHHHHHHHTTTSCC
T ss_pred HHHHHccCHHHHHHHHHHHHHhCCC
Confidence 4444555566666666666665554
No 107
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=98.90 E-value=1.7e-08 Score=89.99 Aligned_cols=161 Identities=11% Similarity=-0.006 Sum_probs=117.7
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC-hHHHHH----------------HHHHHhccCcHHHHHHHHHHhHHhc
Q 007573 373 WNTIIAAFAQHGHYEKALIFFSQMGLNGFDPD-GITFLS----------------LLSACGHAGKVNESMDLFELMVKVY 435 (597)
Q Consensus 373 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~----------------ll~~~~~~g~~~~a~~~~~~~~~~~ 435 (597)
+......+...|++++|+..|++..+. .|+ ...+.. +..++.+.|++++|...|++..+.
T Consensus 7 ~~~~g~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~- 83 (208)
T 3urz_A 7 MLQKVSAAIEAGQNGQAVSYFRQTIAL--NIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQK- 83 (208)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH--CHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH-
Confidence 344455677889999999999998875 454 445666 788888999999999999988864
Q ss_pred CCCCChHHHHHHHHHHhhcCCHHHHHHHHhhCC-CCC-CHHHHHHHHHHHHhcCC--HHHHHHHHHHHHhcCCCCCchHH
Q 007573 436 GIIPSSEHYTCLVDILSRAGQLEKAWQITQGMP-FEA-DTGVWGSLLAACVINLN--VELGELAAKKMRELDPQNSAVYV 511 (597)
Q Consensus 436 ~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~l~~~~~~~g~--~~~a~~~~~~~~~~~p~~~~~~~ 511 (597)
-+-+...+..+..+|...|++++|...|++.. ..| +..+|..++..+...|+ .+.+...++++....|. ...+.
T Consensus 84 -~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~a~~ 161 (208)
T 3urz_A 84 -APNNVDCLEACAEMQVCRGQEKDALRMYEKILQLEADNLAANIFLGNYYYLTAEQEKKKLETDYKKLSSPTKM-QYARY 161 (208)
T ss_dssp -CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHC---CCCHH-HHHHH
T ss_pred -CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhCCCch-hHHHH
Confidence 12347888889999999999999999998876 445 56788888888765543 44556666665432221 23456
Q ss_pred HHHHHHHhcCCcHHHHHHHHHHHhCCC
Q 007573 512 MLSNLYAAAGMWRDVTRVRLLMKEQGV 538 (597)
Q Consensus 512 ~l~~~~~~~g~~~~A~~~~~~~~~~~~ 538 (597)
.++.++...|++++|+..+++..+..+
T Consensus 162 ~~g~~~~~~~~~~~A~~~~~~al~l~P 188 (208)
T 3urz_A 162 RDGLSKLFTTRYEKARNSLQKVILRFP 188 (208)
T ss_dssp HHHHHHHHHHTHHHHHHHHHHHTTTSC
T ss_pred HHHHHHHHccCHHHHHHHHHHHHHhCC
Confidence 678888889999999999999887554
No 108
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=98.89 E-value=2.9e-08 Score=103.60 Aligned_cols=149 Identities=14% Similarity=0.008 Sum_probs=75.4
Q ss_pred CCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCC-ChHHHHHHHHHHhhcCCHHHHHH
Q 007573 384 GHYEKALIFFSQMGLNGFDPDGITFLSLLSACGHAGKVNESMDLFELMVKVYGIIP-SSEHYTCLVDILSRAGQLEKAWQ 462 (597)
Q Consensus 384 g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~ 462 (597)
|++++|++.+++..+.. +.+...+..+...+...|++++|.+.+++..+ ..| +...+..+..+|...|++++|.+
T Consensus 3 g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~---~~p~~~~~~~~lg~~~~~~g~~~~A~~ 78 (568)
T 2vsy_A 3 ADGPRELLQLRAAVRHR-PQDFVAWLMLADAELGMGDTTAGEMAVQRGLA---LHPGHPEAVARLGRVRWTQQRHAEAAV 78 (568)
T ss_dssp -------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHT---TSTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred ccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHCCCHHHHHH
Confidence 45566666666555431 22244555555566666666666666665553 223 25555566666666666666666
Q ss_pred HHhhCC-CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhc---CCcHHHHHHHHHHHhC
Q 007573 463 ITQGMP-FEA-DTGVWGSLLAACVINLNVELGELAAKKMRELDPQNSAVYVMLSNLYAAA---GMWRDVTRVRLLMKEQ 536 (597)
Q Consensus 463 ~~~~~~-~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~---g~~~~A~~~~~~~~~~ 536 (597)
.+++.. ..| +...+..+...+...|++++|+..++++++.+|+++..+..++.++... |++++|.+.+++..+.
T Consensus 79 ~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~ 157 (568)
T 2vsy_A 79 LLQQASDAAPEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQ 157 (568)
T ss_dssp HHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHH
T ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhc
Confidence 665543 222 3445556666666666666666666666666666666666666666666 6666666666555443
No 109
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=98.89 E-value=1.5e-07 Score=95.36 Aligned_cols=219 Identities=7% Similarity=-0.083 Sum_probs=135.3
Q ss_pred HHHHHHHhccC---CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHhccCcHHHHHHHHHHhH
Q 007573 356 LDSELAFRQIH---SPNLVSWNTIIAAFAQHGHYEKALIFFSQMGLNGFDPDGITFLSLLSACGHAGKVNESMDLFELMV 432 (597)
Q Consensus 356 ~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~ 432 (597)
+.+..+|+++. +.+...|-..+.-+.+.|+.++|..++++.... |....+......+...+. +++.+.
T Consensus 196 ~Rv~~~ye~al~~~p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~---P~~~~l~~~y~~~~e~~~------~~~~l~ 266 (493)
T 2uy1_A 196 SRMHFIHNYILDSFYYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM---SDGMFLSLYYGLVMDEEA------VYGDLK 266 (493)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CCSSHHHHHHHHHTTCTH------HHHHHH
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC---CCcHHHHHHHHhhcchhH------HHHHHH
Confidence 34556776665 456778888888888999999999999999976 443322221111212221 123332
Q ss_pred HhcC--------CCC---ChHHHHHHHHHHhhcCCHHHHHHHHhhCCCC-CCHHHHHHHHHHHH-hcCCHHHHHHHHHHH
Q 007573 433 KVYG--------IIP---SSEHYTCLVDILSRAGQLEKAWQITQGMPFE-ADTGVWGSLLAACV-INLNVELGELAAKKM 499 (597)
Q Consensus 433 ~~~~--------~~p---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-p~~~~~~~l~~~~~-~~g~~~~a~~~~~~~ 499 (597)
+.+- ..+ ....|...+..+.+.|..+.|.++|++...+ .+..+|......-. ..++.+.|..+++.+
T Consensus 267 ~~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A~~~~~~~~v~i~~A~lE~~~~~d~~~ar~ife~a 346 (493)
T 2uy1_A 267 RKYSMGEAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIELGNEGVGPHVFIYCAFIEYYATGSRATPYNIFSSG 346 (493)
T ss_dssp HHTC----------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHCCSHHHHHHHHHH
T ss_pred HHHHhhccchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHhhCCCCChHHHHHHHHHHHHHCCChHHHHHHHHHH
Confidence 2210 001 1345667777777888999999999887422 23445543333322 234799999999999
Q ss_pred HhcCCCCCchHHHHHHHHHhcCCcHHHHHHHHHHHhCCCccCCCeeEEEECCEEEEEEeCCCCCcchHHHHHHHHHHHHH
Q 007573 500 RELDPQNSAVYVMLSNLYAAAGMWRDVTRVRLLMKEQGVTKQCAYSWIEIGNKVHYFLGGDMSHPCIDKIHLELKRASVQ 579 (597)
Q Consensus 500 ~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~p~~~~~~~~l~~~~~~ 579 (597)
++..|+++..+...++.....|+.+.|..+|+++.+ .. .-|. .+..=...|+....+...+++....
T Consensus 347 l~~~~~~~~~~~~yid~e~~~~~~~~aR~l~er~~k-----~~-~lw~-------~~~~fE~~~G~~~~~r~v~~~~~~~ 413 (493)
T 2uy1_A 347 LLKHPDSTLLKEEFFLFLLRIGDEENARALFKRLEK-----TS-RMWD-------SMIEYEFMVGSMELFRELVDQKMDA 413 (493)
T ss_dssp HHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHSCC-----BH-HHHH-------HHHHHHHHHSCHHHHHHHHHHHHHH
T ss_pred HHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-----HH-HHHH-------HHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 998888877777788888899999999999998621 00 0010 0111112366777777788888877
Q ss_pred Hhhc--CCccchhcccccC
Q 007573 580 MKSV--DDFVEIATSWSSF 596 (597)
Q Consensus 580 ~~~~--~~~~~~~~~~~~~ 596 (597)
++.. ++......+|..|
T Consensus 414 ~~~~~~~~~~~~~~~~~~f 432 (493)
T 2uy1_A 414 IKADAILPPLPPREHNVQM 432 (493)
T ss_dssp HHTTCCBCCCCCC--CCCC
T ss_pred hcccccCCcccccccHHHH
Confidence 7643 3344555666654
No 110
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=98.88 E-value=1.6e-08 Score=81.75 Aligned_cols=114 Identities=13% Similarity=0.049 Sum_probs=92.0
Q ss_pred CCCC-hHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHhhCC-CCC-CHHHHH
Q 007573 401 FDPD-GITFLSLLSACGHAGKVNESMDLFELMVKVYGIIPSSEHYTCLVDILSRAGQLEKAWQITQGMP-FEA-DTGVWG 477 (597)
Q Consensus 401 ~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~ 477 (597)
+.|+ ...+......+.+.|++++|.+.|++..+. -+.+...|..+..+|.+.|++++|++.+++.. ..| +...|.
T Consensus 8 inP~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~ 85 (126)
T 4gco_A 8 INPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKR--DPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGYI 85 (126)
T ss_dssp CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred HCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHHH
Confidence 3444 345666777888888888888888888764 23357788888888888999999988888765 344 577899
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHH
Q 007573 478 SLLAACVINLNVELGELAAKKMRELDPQNSAVYVMLSNL 516 (597)
Q Consensus 478 ~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 516 (597)
.++.++...|++++|+..|+++++++|+++.++..+..+
T Consensus 86 ~lg~~~~~~~~~~~A~~~~~~al~l~P~~~~a~~~l~~~ 124 (126)
T 4gco_A 86 RKAACLVAMREWSKAQRAYEDALQVDPSNEEAREGVRNC 124 (126)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHCcCCHHHHHHHHHh
Confidence 999999999999999999999999999999888877765
No 111
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=98.87 E-value=3e-08 Score=82.28 Aligned_cols=97 Identities=13% Similarity=-0.055 Sum_probs=84.9
Q ss_pred hHHHHHHHHHHhhcCCHHHHHHHHhhCC-CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHH
Q 007573 441 SEHYTCLVDILSRAGQLEKAWQITQGMP-FEA-DTGVWGSLLAACVINLNVELGELAAKKMRELDPQNSAVYVMLSNLYA 518 (597)
Q Consensus 441 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 518 (597)
...+..+...+.+.|++++|...|++.. ..| +...|..+..++...|++++|+..++++++++|+++..+..++.+|.
T Consensus 18 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~ 97 (142)
T 2xcb_A 18 LEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDINEPRFPFHAAECHL 97 (142)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHH
Confidence 4556667788889999999999998765 344 67788999999999999999999999999999999999999999999
Q ss_pred hcCCcHHHHHHHHHHHhCC
Q 007573 519 AAGMWRDVTRVRLLMKEQG 537 (597)
Q Consensus 519 ~~g~~~~A~~~~~~~~~~~ 537 (597)
..|++++|.+.+++..+..
T Consensus 98 ~~g~~~~A~~~~~~al~~~ 116 (142)
T 2xcb_A 98 QLGDLDGAESGFYSARALA 116 (142)
T ss_dssp HTTCHHHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHhC
Confidence 9999999999999987644
No 112
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=98.87 E-value=9.5e-08 Score=101.56 Aligned_cols=168 Identities=10% Similarity=-0.060 Sum_probs=118.0
Q ss_pred HhcCCHHHHHHHHhccC-----------CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHhcc
Q 007573 350 SRCGGILDSELAFRQIH-----------SPNLVSWNTIIAAFAQHGHYEKALIFFSQMGLNGFDPDGITFLSLLSACGHA 418 (597)
Q Consensus 350 ~~~g~~~~A~~~~~~~~-----------~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~ 418 (597)
...|++++|++.+++.. +.+...|..+...+...|++++|++.|++..+.. +-+...+..+..++...
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~ 480 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDFSESVELPLMEVRALLDLGDVAKATRKLDDLAERV-GWRWRLVWYRAVAELLT 480 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH-CCCHHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhcccccccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccC-cchHHHHHHHHHHHHHc
Confidence 45677777777776654 4455677777777777888888888887777642 33456677777777777
Q ss_pred CcHHHHHHHHHHhHHhcCCCC-ChHHHHHHHHHHhhcCCHHHHHHHHhhCC-CCC-CHHHHHHHHHHHHhcCCHHHHHHH
Q 007573 419 GKVNESMDLFELMVKVYGIIP-SSEHYTCLVDILSRAGQLEKAWQITQGMP-FEA-DTGVWGSLLAACVINLNVELGELA 495 (597)
Q Consensus 419 g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~l~~~~~~~g~~~~a~~~ 495 (597)
|++++|.+.|+++.+. .| +...+..+..+|.+.|++++ .+.|++.. ..| +...|..+..++...|++++|+..
T Consensus 481 g~~~~A~~~~~~al~l---~P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~ 556 (681)
T 2pzi_A 481 GDYDSATKHFTEVLDT---FPGELAPKLALAATAELAGNTDE-HKFYQTVWSTNDGVISAAFGLARARSAEGDRVGAVRT 556 (681)
T ss_dssp TCHHHHHHHHHHHHHH---STTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred CCHHHHHHHHHHHHHh---CCCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhCCchHHHHHHHHHHHHHcCCHHHHHHH
Confidence 8888888888777654 23 36667777777778888777 77777654 334 456777777778888888888888
Q ss_pred HHHHHhcCCCCCchHHHHHHHHHhcCC
Q 007573 496 AKKMRELDPQNSAVYVMLSNLYAAAGM 522 (597)
Q Consensus 496 ~~~~~~~~p~~~~~~~~l~~~~~~~g~ 522 (597)
++++++++|++..++..++.++...|+
T Consensus 557 ~~~al~l~P~~~~a~~~~~~~~~~~~~ 583 (681)
T 2pzi_A 557 LDEVPPTSRHFTTARLTSAVTLLSGRS 583 (681)
T ss_dssp HHTSCTTSTTHHHHHHHHHHHTC----
T ss_pred HHhhcccCcccHHHHHHHHHHHHccCC
Confidence 888888888777777777777766444
No 113
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=98.86 E-value=6.8e-08 Score=86.38 Aligned_cols=127 Identities=10% Similarity=-0.025 Sum_probs=66.8
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHh
Q 007573 373 WNTIIAAFAQHGHYEKALIFFSQMGLNGFDPDGITFLSLLSACGHAGKVNESMDLFELMVKVYGIIPSSEHYTCLVDILS 452 (597)
Q Consensus 373 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~ 452 (597)
+..+...+...|++++|++.|++.. .|+...+..+..++...|++++|...++...+.. +.+...+..+..+|.
T Consensus 9 ~~~~g~~~~~~~~~~~A~~~~~~a~----~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~~lg~~~~ 82 (213)
T 1hh8_A 9 LWNEGVLAADKKDWKGALDAFSAVQ----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD--KHLAVAYFQRGMLYY 82 (213)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSS----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHc----CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--ccchHHHHHHHHHHH
Confidence 3444555556666666666665542 4455556666666666666666666666555431 223445555555555
Q ss_pred hcCCHHHHHHHHhhCC-CCC-CH----------------HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 007573 453 RAGQLEKAWQITQGMP-FEA-DT----------------GVWGSLLAACVINLNVELGELAAKKMRELDPQ 505 (597)
Q Consensus 453 ~~g~~~~A~~~~~~~~-~~p-~~----------------~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~ 505 (597)
..|++++|.+.+++.. ..| +. ..+..+..++...|++++|...++++++.+|+
T Consensus 83 ~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~ 153 (213)
T 1hh8_A 83 QTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSE 153 (213)
T ss_dssp HTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCS
T ss_pred HcccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcCcc
Confidence 5555555555554432 111 11 34455555555555555555555555555543
No 114
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=98.85 E-value=4.1e-08 Score=93.54 Aligned_cols=181 Identities=10% Similarity=0.038 Sum_probs=126.1
Q ss_pred HHHHHhcCCHHHHHHHHhccCC-----CC----hhhHHHHHHHHHHcCCHHHHHHHHHHHHHCC---CCCC--hHHHHHH
Q 007573 346 ITMYSRCGGILDSELAFRQIHS-----PN----LVSWNTIIAAFAQHGHYEKALIFFSQMGLNG---FDPD--GITFLSL 411 (597)
Q Consensus 346 ~~~~~~~g~~~~A~~~~~~~~~-----~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g---~~p~--~~~~~~l 411 (597)
...|...|++++|...|.+... .+ ..+|+.+...|...|++++|+..|++..+.- -.|. ..++..+
T Consensus 43 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~l 122 (307)
T 2ifu_A 43 AVAFKNAKQLEQAKDAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRA 122 (307)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 3456666777777666655431 11 3367777888888899999998888765421 1222 3567778
Q ss_pred HHHHhccCcHHHHHHHHHHhHHhcCCCCC----hHHHHHHHHHHhhcCCHHHHHHHHhhCC-C---CCC----HHHHHHH
Q 007573 412 LSACGHAGKVNESMDLFELMVKVYGIIPS----SEHYTCLVDILSRAGQLEKAWQITQGMP-F---EAD----TGVWGSL 479 (597)
Q Consensus 412 l~~~~~~g~~~~a~~~~~~~~~~~~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~---~p~----~~~~~~l 479 (597)
...+.. |++++|...|++......-..+ ..++..+...|.+.|++++|...+++.. . .++ ...+..+
T Consensus 123 g~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~ 201 (307)
T 2ifu_A 123 GKLMEP-LDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQ 201 (307)
T ss_dssp HHHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHH
Confidence 888888 9999999999988764221111 4578888999999999999999998765 1 122 2256667
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhcCCCCCch-----HHHHHHHHHhcCCcHHHHHH
Q 007573 480 LAACVINLNVELGELAAKKMRELDPQNSAV-----YVMLSNLYAAAGMWRDVTRV 529 (597)
Q Consensus 480 ~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~-----~~~l~~~~~~~g~~~~A~~~ 529 (597)
+..+...|++++|+..+++++ ++|..... ...++.++ ..|+.+.+.++
T Consensus 202 g~~~~~~g~~~~A~~~~~~al-~~p~~~~~~e~~~l~~l~~~~-~~~d~~~~~~~ 254 (307)
T 2ifu_A 202 VLVQLHRADYVAAQKCVRESY-SIPGFSGSEDCAALEDLLQAY-DEQDEEQLLRV 254 (307)
T ss_dssp HHHHHHTTCHHHHHHHHHHHT-TSTTSTTSHHHHHHHHHHHHH-HTTCHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHh-CCCCCCCCHHHHHHHHHHHHH-HhcCHHHHHHH
Confidence 777888899999999999999 88875432 34455555 56776666553
No 115
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=98.85 E-value=2.8e-08 Score=94.68 Aligned_cols=196 Identities=9% Similarity=-0.032 Sum_probs=147.3
Q ss_pred cchhHHHHHHHHHHHHhCCCCcccHHHHHHHHHHhcCCHHHHHHHHhccCCCChhhHHHHHHHHHHcCCHHHHHHHHHHH
Q 007573 317 LQLLNEGRQSHVLVIRNGFEANVSVCNAVITMYSRCGGILDSELAFRQIHSPNLVSWNTIIAAFAQHGHYEKALIFFSQM 396 (597)
Q Consensus 317 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 396 (597)
.|++++|..++++..+..-. . .+...++++.|...|.. ....|...|++++|.+.|.+.
T Consensus 4 ~~~~~eA~~~~~~a~k~~~~-~---------~~~~~~~~~~A~~~~~~-----------a~~~~~~~g~~~~A~~~~~~a 62 (307)
T 2ifu_A 4 AQKISEAHEHIAKAEKYLKT-S---------FMKWKPDYDSAASEYAK-----------AAVAFKNAKQLEQAKDAYLQE 62 (307)
T ss_dssp HHHHHHHHHHHHHHHHHHCC-C---------SSSCSCCHHHHHHHHHH-----------HHHHHHHTTCHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHccc-c---------ccCCCCCHHHHHHHHHH-----------HHHHHHHcCCHHHHHHHHHHH
Confidence 56677777777776654211 1 01114778888877654 356788899999999999887
Q ss_pred HHC----CCCCC-hHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCC----hHHHHHHHHHHhhcCCHHHHHHHHhhC
Q 007573 397 GLN----GFDPD-GITFLSLLSACGHAGKVNESMDLFELMVKVYGIIPS----SEHYTCLVDILSRAGQLEKAWQITQGM 467 (597)
Q Consensus 397 ~~~----g~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~ 467 (597)
.+. |-.+. ..+|..+...|...|++++|...|++..+.+.-..+ ..++..+..+|.. |++++|++.+++.
T Consensus 63 l~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~~~~A 141 (307)
T 2ifu_A 63 AEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHLYQQA 141 (307)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHH
Confidence 653 21111 347888889999999999999999988764321111 4577888999988 9999999999876
Q ss_pred C-CC---CC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCC------chHHHHHHHHHhcCCcHHHHHHHHHH
Q 007573 468 P-FE---AD----TGVWGSLLAACVINLNVELGELAAKKMRELDPQNS------AVYVMLSNLYAAAGMWRDVTRVRLLM 533 (597)
Q Consensus 468 ~-~~---p~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~------~~~~~l~~~~~~~g~~~~A~~~~~~~ 533 (597)
. .. .+ ..++..+...+...|++++|+..+++++++.|++. ..+..++.++...|++++|.+.+++.
T Consensus 142 l~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~a 221 (307)
T 2ifu_A 142 AAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVRES 221 (307)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 4 11 11 45788899999999999999999999999866543 36677888899999999999999998
Q ss_pred H
Q 007573 534 K 534 (597)
Q Consensus 534 ~ 534 (597)
.
T Consensus 222 l 222 (307)
T 2ifu_A 222 Y 222 (307)
T ss_dssp T
T ss_pred h
Confidence 7
No 116
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=98.81 E-value=9.5e-08 Score=89.89 Aligned_cols=134 Identities=10% Similarity=0.030 Sum_probs=113.4
Q ss_pred CCChHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHhhCC-CCCCHHHHHHHH
Q 007573 402 DPDGITFLSLLSACGHAGKVNESMDLFELMVKVYGIIPSSEHYTCLVDILSRAGQLEKAWQITQGMP-FEADTGVWGSLL 480 (597)
Q Consensus 402 ~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p~~~~~~~l~ 480 (597)
+.+...+..+...+...|++++|...|+++.+. -+-+...+..+..+|.+.|++++|...++++. ..|+........
T Consensus 114 p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~~~ 191 (287)
T 3qou_A 114 PREEELXAQQAMQLMQESNYTDALPLLXDAWQL--SNQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQDQDTRYQGLVA 191 (287)
T ss_dssp CCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--TTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGCSHHHHHHHH
T ss_pred CCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHh--CCcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhhcchHHHHHHH
Confidence 334566777888889999999999999999874 23347889999999999999999999999987 567765443333
Q ss_pred H-HHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCcHHHHHHHHHHHhCC
Q 007573 481 A-ACVINLNVELGELAAKKMRELDPQNSAVYVMLSNLYAAAGMWRDVTRVRLLMKEQG 537 (597)
Q Consensus 481 ~-~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 537 (597)
. .+...++.+.|+..++++++.+|+++..+..++.+|...|++++|.+.++++.+..
T Consensus 192 ~~~l~~~~~~~~a~~~l~~al~~~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~ 249 (287)
T 3qou_A 192 QIELLXQAADTPEIQQLQQQVAENPEDAALATQLALQLHQVGRNEEALELLFGHLRXD 249 (287)
T ss_dssp HHHHHHHHTSCHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHhhcccCccHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcc
Confidence 3 36777888899999999999999999999999999999999999999999998754
No 117
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=98.80 E-value=1.7e-06 Score=87.75 Aligned_cols=344 Identities=10% Similarity=-0.011 Sum_probs=185.1
Q ss_pred CChHHHHHHHccCC--CCChhhHHHHHHHHHcCCC-hHHHHHHHccCC------CCCchhHHHHHHHHHh----CCChhH
Q 007573 126 DRIDDAFDYFQAMP--ERNTATYNAMISGFLKHGR-LEEATRLFEQMP------RRNVISYTAMLDGFMK----KGEVDK 192 (597)
Q Consensus 126 ~~~~~A~~~~~~~~--~~~~~~~~~l~~~~~~~g~-~~~A~~~~~~~~------~~~~~~~~~li~~~~~----~g~~~~ 192 (597)
++++.+..+|++.. .|+...|...+....+.++ .+....+|+... ..+...|...+..+.. +|+.+.
T Consensus 28 ~~~e~~~~iferal~~~ps~~LW~~Y~~f~~~~~~~~~~i~~~fe~al~~vg~d~~s~~iW~~Yi~f~~~~~~~~~~~~~ 107 (493)
T 2uy1_A 28 KDYRSLESLFGRCLKKSYNLDLWMLYIEYVRKVSQKKFKLYEVYEFTLGQFENYWDSYGLYKEYIEEEGKIEDEQTRIEK 107 (493)
T ss_dssp TCHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHC----CTHHHHHHHHHHSTTCTTCHHHHHHHHHHTSSCSSHHHHHHH
T ss_pred CCHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHcCCCcccHHHHHHHHHHHHhchhhhHHHHH
Confidence 67777777777766 3566677766666555542 233444444322 1244556555554432 345566
Q ss_pred HHHHHHhcccCCcchHHHHHHHHH---cCCChHHHHHHHhhcCCCCCCchHHHHHHHHHHhcCCHHHHHHHHhhcC----
Q 007573 193 ARALSDYMSFKNVVSWTVMITGYV---KNERFCEARELFYRMPDYDKNVFVVTAMITGFCKVGMLENARLLFERIQ---- 265 (597)
Q Consensus 193 A~~~~~~m~~~~~~~~~~ll~~~~---~~g~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---- 265 (597)
+..+|++........+..+-..|. .......+.+++... .+.+..|..+++.+.
T Consensus 108 vR~iy~rAL~~P~~~~~~lw~~Y~~fE~~~~~~~~~~~~~~~-------------------~~~y~~ar~~y~~~~~~~~ 168 (493)
T 2uy1_A 108 IRNGYMRALQTPMGSLSELWKDFENFELELNKITGKKIVGDT-------------------LPIFQSSFQRYQQIQPLIR 168 (493)
T ss_dssp HHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCHHHHHHHHHHH-------------------HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhChhhhHHHHHHHHHHHHHHhccccHHHHHHHH-------------------hHHHHHHHHHHHHHHHHHh
Confidence 666666663311111111111111 111111122111110 011222222222211
Q ss_pred CCChhHHHHHHHHHHHcCC-------hhHHHHHHHHhHHCCCCCCHHHHHHHHHHHhccchhHHHHHHHHHHHHhCCCCc
Q 007573 266 PKDCVSFNAMIAGYAQNGV-------AEEALRLFSGMIKMDMQPDDATLVSVFTACSALQLLNEGRQSHVLVIRNGFEAN 338 (597)
Q Consensus 266 ~~~~~~~~~li~~~~~~g~-------~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~ 338 (597)
..+...|...+.--...+. .+.+..+|++++... +-+...|...+.-+...|+.+.|..+++..++. |.+
T Consensus 169 ~~s~~~W~~y~~~E~~~~~~~~~~~~~~Rv~~~ye~al~~~-p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~--P~~ 245 (493)
T 2uy1_A 169 GWSVKNAARLIDLEMENGMKLGGRPHESRMHFIHNYILDSF-YYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM--SDG 245 (493)
T ss_dssp TCSHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHT-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCS
T ss_pred hccHHHHHHHHHHHhcCCccCcchhhHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC--CCc
Confidence 1133455554443222211 234566777777643 334555666666666777888888888888777 444
Q ss_pred ccHHHHHHHHHHhcCCHHHH-HHHHhccC------------CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCh
Q 007573 339 VSVCNAVITMYSRCGGILDS-ELAFRQIH------------SPNLVSWNTIIAAFAQHGHYEKALIFFSQMGLNGFDPDG 405 (597)
Q Consensus 339 ~~~~~~l~~~~~~~g~~~~A-~~~~~~~~------------~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~ 405 (597)
...+.. |....+.++. ..+.+... ......|...+....+.++.+.|..+|.+. ... ..+.
T Consensus 246 ~~l~~~----y~~~~e~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~~-~~~~ 319 (493)
T 2uy1_A 246 MFLSLY----YGLVMDEEAVYGDLKRKYSMGEAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-GNE-GVGP 319 (493)
T ss_dssp SHHHHH----HHHHTTCTHHHHHHHHHTC----------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TTS-CCCH
T ss_pred HHHHHH----HHhhcchhHHHHHHHHHHHhhccchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hCC-CCCh
Confidence 433332 2221111111 11111110 011245667777777788899999999988 321 2334
Q ss_pred HHHHHHHHHHhc-cCcHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHhhCCCCCCHHHHHHHHHHHH
Q 007573 406 ITFLSLLSACGH-AGKVNESMDLFELMVKVYGIIPSSEHYTCLVDILSRAGQLEKAWQITQGMPFEADTGVWGSLLAACV 484 (597)
Q Consensus 406 ~~~~~ll~~~~~-~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~ 484 (597)
..|......-.. .++.+.|..+|+...+.++ -++..+...++.....|+.+.|..+|+++. .....|...+..-.
T Consensus 320 ~v~i~~A~lE~~~~~d~~~ar~ife~al~~~~--~~~~~~~~yid~e~~~~~~~~aR~l~er~~--k~~~lw~~~~~fE~ 395 (493)
T 2uy1_A 320 HVFIYCAFIEYYATGSRATPYNIFSSGLLKHP--DSTLLKEEFFLFLLRIGDEENARALFKRLE--KTSRMWDSMIEYEF 395 (493)
T ss_dssp HHHHHHHHHHHHHHCCSHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHHHTCHHHHHHHHHHSC--CBHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCChHHHHHHHHHHHHHCC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHH--HHHHHHHHHHHHHH
Confidence 444332222222 3368999999999988642 235556667888888999999999999984 35678888888878
Q ss_pred hcCCHHHHHHHHHHHHh
Q 007573 485 INLNVELGELAAKKMRE 501 (597)
Q Consensus 485 ~~g~~~~a~~~~~~~~~ 501 (597)
..|+.+.+..+++++.+
T Consensus 396 ~~G~~~~~r~v~~~~~~ 412 (493)
T 2uy1_A 396 MVGSMELFRELVDQKMD 412 (493)
T ss_dssp HHSCHHHHHHHHHHHHH
T ss_pred HCCCHHHHHHHHHHHHH
Confidence 88999999998888874
No 118
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=98.79 E-value=8.5e-07 Score=83.69 Aligned_cols=161 Identities=7% Similarity=-0.029 Sum_probs=123.3
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHCC-CCCChH----HHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCC----hHHHH
Q 007573 375 TIIAAFAQHGHYEKALIFFSQMGLNG-FDPDGI----TFLSLLSACGHAGKVNESMDLFELMVKVYGIIPS----SEHYT 445 (597)
Q Consensus 375 ~li~~~~~~g~~~~A~~~~~~m~~~g-~~p~~~----~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~----~~~~~ 445 (597)
..+..+...|++++|..++++..+.. ..|+.. .+..+...+...|++++|...++.+.+...-.++ ..+++
T Consensus 80 ~~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~ 159 (293)
T 3u3w_A 80 DQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIEN 159 (293)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHH
T ss_pred HHHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHH
Confidence 34667888999999999999988642 122221 2334666777888999999999998874222233 33688
Q ss_pred HHHHHHhhcCCHHHHHHHHhhCC-----CCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC------CchH
Q 007573 446 CLVDILSRAGQLEKAWQITQGMP-----FEAD----TGVWGSLLAACVINLNVELGELAAKKMRELDPQN------SAVY 510 (597)
Q Consensus 446 ~l~~~~~~~g~~~~A~~~~~~~~-----~~p~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~------~~~~ 510 (597)
.+...|...|++++|...++++. .+.+ ..++..++..|...|++++|+..+++++++.+.. ..+|
T Consensus 160 ~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~ 239 (293)
T 3u3w_A 160 AIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLY 239 (293)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHH
Confidence 89999999999999999988764 1112 2378889999999999999999999999865432 5678
Q ss_pred HHHHHHHHhcCC-cHHHHHHHHHHHh
Q 007573 511 VMLSNLYAAAGM-WRDVTRVRLLMKE 535 (597)
Q Consensus 511 ~~l~~~~~~~g~-~~~A~~~~~~~~~ 535 (597)
..++.+|.+.|+ +++|.+.+++...
T Consensus 240 ~~lg~~~~~~g~~~~~A~~~~~~Al~ 265 (293)
T 3u3w_A 240 YQRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCcHHHHHHHHHHHHH
Confidence 999999999995 6999999998865
No 119
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=98.79 E-value=5.4e-08 Score=84.14 Aligned_cols=156 Identities=8% Similarity=-0.037 Sum_probs=118.3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHhccC---CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHH-Hh
Q 007573 341 VCNAVITMYSRCGGILDSELAFRQIH---SPNLVSWNTIIAAFAQHGHYEKALIFFSQMGLNGFDPDGITFLSLLSA-CG 416 (597)
Q Consensus 341 ~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~-~~ 416 (597)
....+...+.+.|++++|...|++.. +.+...+..+...+...|++++|+..+++.... .|+.......... +.
T Consensus 8 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~--~p~~~~~~~~~~~~~~ 85 (176)
T 2r5s_A 8 QLLKQVSELLQQGEHAQALNVIQTLSDELQSRGDVKLAKADCLLETKQFELAQELLATIPLE--YQDNSYKSLIAKLELH 85 (176)
T ss_dssp THHHHHHHHHHTTCHHHHHHHHHTSCHHHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGG--GCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhc--cCChHHHHHHHHHHHH
Confidence 44556677888999999999999887 566778899999999999999999999987654 3444333222211 11
Q ss_pred ccCcHHHHHHHHHHhHHhcCCCC-ChHHHHHHHHHHhhcCCHHHHHHHHhhCC-CCCC---HHHHHHHHHHHHhcCCHHH
Q 007573 417 HAGKVNESMDLFELMVKVYGIIP-SSEHYTCLVDILSRAGQLEKAWQITQGMP-FEAD---TGVWGSLLAACVINLNVEL 491 (597)
Q Consensus 417 ~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p~---~~~~~~l~~~~~~~g~~~~ 491 (597)
..+...+|...+++..+. .| +...+..+..++...|++++|...++++. ..|+ ...+..++..+...|+.++
T Consensus 86 ~~~~~~~a~~~~~~al~~---~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~ 162 (176)
T 2r5s_A 86 QQAAESPELKRLEQELAA---NPDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNA 162 (176)
T ss_dssp HHHTSCHHHHHHHHHHHH---STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCH
T ss_pred hhcccchHHHHHHHHHHh---CCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCc
Confidence 222223467888887764 34 47888899999999999999999998765 4554 5588899999999999999
Q ss_pred HHHHHHHHHh
Q 007573 492 GELAAKKMRE 501 (597)
Q Consensus 492 a~~~~~~~~~ 501 (597)
|...|++++.
T Consensus 163 A~~~y~~al~ 172 (176)
T 2r5s_A 163 IASKYRRQLY 172 (176)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999998764
No 120
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=98.79 E-value=6.6e-07 Score=83.86 Aligned_cols=218 Identities=11% Similarity=0.063 Sum_probs=99.2
Q ss_pred CChhHHHHHHHHhHHCCCCCCHHH-HHHHHHHHhccc--hhHHHHHHHHHHHHhCCCCcccHHHHHHHHH----HhcCCH
Q 007573 283 GVAEEALRLFSGMIKMDMQPDDAT-LVSVFTACSALQ--LLNEGRQSHVLVIRNGFEANVSVCNAVITMY----SRCGGI 355 (597)
Q Consensus 283 g~~~~A~~~~~~m~~~g~~p~~~~-~~~ll~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~----~~~g~~ 355 (597)
...++|+.++..++.. .|+..| |+.--..+...+ +++++...++.++..+ +-+..+|+.-...+ ...+
T Consensus 47 e~s~~aL~~t~~~L~~--nP~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~n-Pk~y~aW~~R~~iL~~~~~~l~-- 121 (306)
T 3dra_A 47 EYSERALHITELGINE--LASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDN-EKNYQIWNYRQLIIGQIMELNN-- 121 (306)
T ss_dssp CCSHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHC-TTCCHHHHHHHHHHHHHHHHTT--
T ss_pred CCCHHHHHHHHHHHHH--CcHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHC-cccHHHHHHHHHHHHHHHHhcc--
Confidence 3345788888777764 454433 333333444444 5666666666665554 23333333333222 2220
Q ss_pred HHHHHHHhccCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHhccCcHH--HHHHHHHHhHH
Q 007573 356 LDSELAFRQIHSPNLVSWNTIIAAFAQHGHYEKALIFFSQMGLNGFDPDGITFLSLLSACGHAGKVN--ESMDLFELMVK 433 (597)
Q Consensus 356 ~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~--~a~~~~~~~~~ 433 (597)
..+++++++++++++.+.. +-+..+|..-...+.+.|.++ ++.+.++.+.+
T Consensus 122 --------------------------~~~~~~~EL~~~~~~l~~~-pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~ 174 (306)
T 3dra_A 122 --------------------------NDFDPYREFDILEAMLSSD-PKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVID 174 (306)
T ss_dssp --------------------------TCCCTHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHH
T ss_pred --------------------------ccCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHH
Confidence 0034444455444444331 223333433333333444444 44444444443
Q ss_pred hcCCCCChHHHHHHHHHHhhcCC------HHHHHHHHhhCC--CCCCHHHHHHHHHHHHhcCCH-HHHHHHHHHHHhcC-
Q 007573 434 VYGIIPSSEHYTCLVDILSRAGQ------LEKAWQITQGMP--FEADTGVWGSLLAACVINLNV-ELGELAAKKMRELD- 503 (597)
Q Consensus 434 ~~~~~p~~~~~~~l~~~~~~~g~------~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~g~~-~~a~~~~~~~~~~~- 503 (597)
. -+-+-..|+.-..++.+.|+ ++++++.++++. .+-|...|+-+...+.+.|+. +....+..++.+++
T Consensus 175 ~--d~~N~sAW~~R~~ll~~l~~~~~~~~~~eEl~~~~~aI~~~p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~ 252 (306)
T 3dra_A 175 T--DLKNNSAWSHRFFLLFSKKHLATDNTIDEELNYVKDKIVKCPQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEK 252 (306)
T ss_dssp H--CTTCHHHHHHHHHHHHSSGGGCCHHHHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGG
T ss_pred h--CCCCHHHHHHHHHHHHhccccchhhhHHHHHHHHHHHHHhCCCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccC
Confidence 2 11223333333333333333 445555444433 222444555555555444442 22334444444443
Q ss_pred --CCCCchHHHHHHHHHhcCCcHHHHHHHHHHH
Q 007573 504 --PQNSAVYVMLSNLYAAAGMWRDVTRVRLLMK 534 (597)
Q Consensus 504 --p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 534 (597)
|.++.++..++.+|.+.|+.++|.++++.+.
T Consensus 253 ~~~~s~~al~~la~~~~~~~~~~~A~~~~~~l~ 285 (306)
T 3dra_A 253 DQVTSSFALETLAKIYTQQKKYNESRTVYDLLK 285 (306)
T ss_dssp TEESCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHH
Confidence 4445555555555555555555555555554
No 121
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=98.78 E-value=1e-07 Score=81.23 Aligned_cols=127 Identities=6% Similarity=-0.070 Sum_probs=96.4
Q ss_pred HHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHhhCC--CCCCHHHHHHHHHHHH
Q 007573 407 TFLSLLSACGHAGKVNESMDLFELMVKVYGIIPSSEHYTCLVDILSRAGQLEKAWQITQGMP--FEADTGVWGSLLAACV 484 (597)
Q Consensus 407 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~ 484 (597)
.+..+...+...|++++|...|+...+. .+.+...+..++..+...|++++|.+.+++.. .+.+...|..++.++.
T Consensus 15 ~~~~~a~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~ 92 (166)
T 1a17_A 15 ELKTQANDYFKAKDYENAIKFYSQAIEL--NPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNM 92 (166)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHH
Confidence 3555556666777777777777776653 12346677777777778888888888777654 3345678888899999
Q ss_pred hcCCHHHHHHHHHHHHhcCCCCCchHHHHH--HHHHhcCCcHHHHHHHHHHHh
Q 007573 485 INLNVELGELAAKKMRELDPQNSAVYVMLS--NLYAAAGMWRDVTRVRLLMKE 535 (597)
Q Consensus 485 ~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~--~~~~~~g~~~~A~~~~~~~~~ 535 (597)
..|++++|...++++++.+|.++..+..+. ..+...|++++|.+.++....
T Consensus 93 ~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~ 145 (166)
T 1a17_A 93 ALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRS 145 (166)
T ss_dssp HTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHcccchHH
Confidence 999999999999999999999977775444 448889999999999987754
No 122
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=98.76 E-value=2.4e-07 Score=87.47 Aligned_cols=164 Identities=7% Similarity=-0.088 Sum_probs=123.0
Q ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC-h----HHHHHHHHHHhccCcHHHHHHHHHHhHHhcCC--CCC--hH
Q 007573 372 SWNTIIAAFAQHGHYEKALIFFSQMGLNGFDPD-G----ITFLSLLSACGHAGKVNESMDLFELMVKVYGI--IPS--SE 442 (597)
Q Consensus 372 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~----~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~--~p~--~~ 442 (597)
.+...+..+...|++++|.+.+.+..+...... . ..+..+...+...|++++|...+++..+...- .+. ..
T Consensus 77 ~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 156 (293)
T 2qfc_A 77 QFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLY 156 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHH
Confidence 445566778889999999999988876532211 1 22344556677888999999999888753111 111 45
Q ss_pred HHHHHHHHHhhcCCHHHHHHHHhhCC----CCCC-----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC--C----C
Q 007573 443 HYTCLVDILSRAGQLEKAWQITQGMP----FEAD-----TGVWGSLLAACVINLNVELGELAAKKMRELDPQ--N----S 507 (597)
Q Consensus 443 ~~~~l~~~~~~~g~~~~A~~~~~~~~----~~p~-----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~--~----~ 507 (597)
+++.+...|...|++++|...+++.. ..|+ ..++..++..|...|++++|+..+++++++.++ + .
T Consensus 157 ~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~ 236 (293)
T 2qfc_A 157 IENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIG 236 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHH
Confidence 78889999999999999999997754 1222 257888999999999999999999999976432 1 5
Q ss_pred chHHHHHHHHHhcCCcHHH-HHHHHHHHh
Q 007573 508 AVYVMLSNLYAAAGMWRDV-TRVRLLMKE 535 (597)
Q Consensus 508 ~~~~~l~~~~~~~g~~~~A-~~~~~~~~~ 535 (597)
.+|..++.+|.+.|++++| ...+++...
T Consensus 237 ~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~ 265 (293)
T 2qfc_A 237 QLYYQRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCcHHHHHHHHHHHHH
Confidence 6788999999999999999 777887654
No 123
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=98.76 E-value=2e-07 Score=84.23 Aligned_cols=184 Identities=11% Similarity=-0.059 Sum_probs=131.0
Q ss_pred HHHHHHHHHHHhccchhHHHHHHHHHHHHhCCCC--cccHHHHHHHHHHhcCCHHHHHHHHhccC--CCC-hh---hHHH
Q 007573 304 DATLVSVFTACSALQLLNEGRQSHVLVIRNGFEA--NVSVCNAVITMYSRCGGILDSELAFRQIH--SPN-LV---SWNT 375 (597)
Q Consensus 304 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~-~~---~~~~ 375 (597)
...+......+...|++++|...++.+++..... ....+..+..+|.+.|++++|+..|+++. .|+ .. ++..
T Consensus 4 ~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~~ 83 (225)
T 2yhc_A 4 PNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMYM 83 (225)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHHH
Confidence 3344556667888999999999999999875322 23567888999999999999999999876 233 22 4555
Q ss_pred HHHHHHH------------------cCCHHHHHHHHHHHHHCCCCCChH-HHHHHHHHHhccCcHHHHHHHHHHhHHhcC
Q 007573 376 IIAAFAQ------------------HGHYEKALIFFSQMGLNGFDPDGI-TFLSLLSACGHAGKVNESMDLFELMVKVYG 436 (597)
Q Consensus 376 li~~~~~------------------~g~~~~A~~~~~~m~~~g~~p~~~-~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~ 436 (597)
+..++.. .|++++|+..|+++.+. .|+.. ....... ...+...+.
T Consensus 84 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~--~P~~~~a~~a~~~----------l~~~~~~~~---- 147 (225)
T 2yhc_A 84 RGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRG--YPNSQYTTDATKR----------LVFLKDRLA---- 147 (225)
T ss_dssp HHHHHHHHHC--------------CCHHHHHHHHHHHHHHTT--CTTCTTHHHHHHH----------HHHHHHHHH----
T ss_pred HHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHH--CcCChhHHHHHHH----------HHHHHHHHH----
Confidence 5555554 57899999999999875 45532 2221111 001111111
Q ss_pred CCCChHHHHHHHHHHhhcCCHHHHHHHHhhCC-CCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCc
Q 007573 437 IIPSSEHYTCLVDILSRAGQLEKAWQITQGMP-FEADT----GVWGSLLAACVINLNVELGELAAKKMRELDPQNSA 508 (597)
Q Consensus 437 ~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p~~----~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~ 508 (597)
.....+...|.+.|++++|...++++. ..|+. ..+..++.++.+.|+.++|+..++++....|++..
T Consensus 148 -----~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~~~~~ 219 (225)
T 2yhc_A 148 -----KYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSSNTLE 219 (225)
T ss_dssp -----HHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCSCCCC
T ss_pred -----HHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCchh
Confidence 122356788899999999999998876 34442 46888899999999999999999999998888643
No 124
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=98.76 E-value=6.9e-08 Score=83.48 Aligned_cols=120 Identities=7% Similarity=0.059 Sum_probs=79.2
Q ss_pred hccCcHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHhhCC-C-CCCHHHHHHHHHH-HHhcCCH--H
Q 007573 416 GHAGKVNESMDLFELMVKVYGIIPSSEHYTCLVDILSRAGQLEKAWQITQGMP-F-EADTGVWGSLLAA-CVINLNV--E 490 (597)
Q Consensus 416 ~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~-~p~~~~~~~l~~~-~~~~g~~--~ 490 (597)
...|++++|...++...+. .+.+...+..+...|...|++++|...+++.. . +.+...+..+..+ +...|++ +
T Consensus 21 ~~~~~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~~~ 98 (177)
T 2e2e_A 21 ASQQNPEAQLQALQDKIRA--NPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAELYAALATVLYYQASQHMTA 98 (177)
T ss_dssp C-----CCCCHHHHHHHHH--CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCCCH
T ss_pred hhccCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCcchH
Confidence 3455666666666666553 12345666667777777777777777776654 2 2345566667766 6677777 7
Q ss_pred HHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCcHHHHHHHHHHHhCC
Q 007573 491 LGELAAKKMRELDPQNSAVYVMLSNLYAAAGMWRDVTRVRLLMKEQG 537 (597)
Q Consensus 491 ~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 537 (597)
+|+..++++++.+|.++.++..++.+|...|++++|.+.++++.+..
T Consensus 99 ~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 145 (177)
T 2e2e_A 99 QTRAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMDLN 145 (177)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhC
Confidence 78888888888888777777778888888888888888877776644
No 125
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=98.73 E-value=6e-06 Score=77.32 Aligned_cols=238 Identities=7% Similarity=-0.049 Sum_probs=162.6
Q ss_pred HHHHHhcCC-HHHHHHHHhhcC---CCChhHHHHHHHHHHHcC--ChhHHHHHHHHhHHCCCCCCHH-HHHHHHHHHhcc
Q 007573 245 ITGFCKVGM-LENARLLFERIQ---PKDCVSFNAMIAGYAQNG--VAEEALRLFSGMIKMDMQPDDA-TLVSVFTACSAL 317 (597)
Q Consensus 245 ~~~~~~~g~-~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g--~~~~A~~~~~~m~~~g~~p~~~-~~~~ll~~~~~~ 317 (597)
+.+..+.|. .++|+..++.+. +.+..+|+.-...+...| ++++++..++.+.... |... .|+.--..+
T Consensus 39 ~~a~~~~~e~s~~aL~~t~~~L~~nP~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~n--Pk~y~aW~~R~~iL--- 113 (306)
T 3dra_A 39 LLALMKAEEYSERALHITELGINELASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDN--EKNYQIWNYRQLII--- 113 (306)
T ss_dssp HHHHHHTTCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHC--TTCCHHHHHHHHHH---
T ss_pred HHHHHHcCCCCHHHHHHHHHHHHHCcHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHC--cccHHHHHHHHHHH---
Confidence 333444554 478999998865 346678999888888888 9999999999999864 4332 232211111
Q ss_pred chhHHHHHHHHHHHHhCCCCcccHHHHHHHHHHhcCCHHHHHHHHhccC---CCChhhHHHHHHHHHHcCCHH--HHHHH
Q 007573 318 QLLNEGRQSHVLVIRNGFEANVSVCNAVITMYSRCGGILDSELAFRQIH---SPNLVSWNTIIAAFAQHGHYE--KALIF 392 (597)
Q Consensus 318 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~--~A~~~ 392 (597)
..+... ....++++++..+++.+. +.+..+|+.-...+.+.|.++ ++++.
T Consensus 114 ----------~~~~~~---------------l~~~~~~~~EL~~~~~~l~~~pkny~aW~~R~~vl~~l~~~~~~~EL~~ 168 (306)
T 3dra_A 114 ----------GQIMEL---------------NNNDFDPYREFDILEAMLSSDPKNHHVWSYRKWLVDTFDLHNDAKELSF 168 (306)
T ss_dssp ----------HHHHHH---------------TTTCCCTHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTCHHHHHH
T ss_pred ----------HHHHHh---------------ccccCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcccChHHHHHH
Confidence 000000 000123344444444443 566777777777777778777 89999
Q ss_pred HHHHHHCCCCCChHHHHHHHHHHhccCc------HHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHH-HHHHHh
Q 007573 393 FSQMGLNGFDPDGITFLSLLSACGHAGK------VNESMDLFELMVKVYGIIPSSEHYTCLVDILSRAGQLEK-AWQITQ 465 (597)
Q Consensus 393 ~~~m~~~g~~p~~~~~~~ll~~~~~~g~------~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~-A~~~~~ 465 (597)
++++.+.. .-|...|+.-...+.+.+. ++++++.++.++.. -+-|...|+.+..++.+.|+..+ +..+..
T Consensus 169 ~~~~i~~d-~~N~sAW~~R~~ll~~l~~~~~~~~~~eEl~~~~~aI~~--~p~n~SaW~y~~~ll~~~~~~~~~~~~~~~ 245 (306)
T 3dra_A 169 VDKVIDTD-LKNNSAWSHRFFLLFSKKHLATDNTIDEELNYVKDKIVK--CPQNPSTWNYLLGIHERFDRSITQLEEFSL 245 (306)
T ss_dssp HHHHHHHC-TTCHHHHHHHHHHHHSSGGGCCHHHHHHHHHHHHHHHHH--CSSCHHHHHHHHHHHHHTTCCGGGGHHHHH
T ss_pred HHHHHHhC-CCCHHHHHHHHHHHHhccccchhhhHHHHHHHHHHHHHh--CCCCccHHHHHHHHHHhcCCChHHHHHHHH
Confidence 99998764 3456667666666666665 88999999888864 23457888888888888887544 555666
Q ss_pred hCC-C----CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh-cCCCCCchHHHHHH
Q 007573 466 GMP-F----EADTGVWGSLLAACVINLNVELGELAAKKMRE-LDPQNSAVYVMLSN 515 (597)
Q Consensus 466 ~~~-~----~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-~~p~~~~~~~~l~~ 515 (597)
++. . ..++..+..++..+.+.|+.++|+++++.+.+ .+|.....+...+.
T Consensus 246 ~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~~~~~l~~~~Dpir~~yW~~~~~ 301 (306)
T 3dra_A 246 QFVDLEKDQVTSSFALETLAKIYTQQKKYNESRTVYDLLKSKYNPIRSNFWDYQIS 301 (306)
T ss_dssp TTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCGGGHHHHHHHHH
T ss_pred HHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhccChHHHHHHHHHHh
Confidence 654 2 34677899999999999999999999999996 79987766655443
No 126
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=98.73 E-value=1.1e-07 Score=76.93 Aligned_cols=97 Identities=12% Similarity=0.003 Sum_probs=82.8
Q ss_pred hHHHHHHHHHHhhcCCHHHHHHHHhhCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHH
Q 007573 441 SEHYTCLVDILSRAGQLEKAWQITQGMP--FEADTGVWGSLLAACVINLNVELGELAAKKMRELDPQNSAVYVMLSNLYA 518 (597)
Q Consensus 441 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 518 (597)
...+..+...+.+.|++++|.+.|++.. .+.+...|..+..++...|++++|+..++++++++|+++.++..++.++.
T Consensus 4 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~ 83 (126)
T 3upv_A 4 AEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQI 83 (126)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Confidence 3456667778888888888888888765 33467788999999999999999999999999999999999999999999
Q ss_pred hcCCcHHHHHHHHHHHhCC
Q 007573 519 AAGMWRDVTRVRLLMKEQG 537 (597)
Q Consensus 519 ~~g~~~~A~~~~~~~~~~~ 537 (597)
..|++++|.+.+++..+..
T Consensus 84 ~~~~~~~A~~~~~~al~~~ 102 (126)
T 3upv_A 84 AVKEYASALETLDAARTKD 102 (126)
T ss_dssp HTTCHHHHHHHHHHHHHHH
T ss_pred HHhCHHHHHHHHHHHHHhC
Confidence 9999999999999887643
No 127
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.73 E-value=2e-07 Score=74.73 Aligned_cols=114 Identities=18% Similarity=0.191 Sum_probs=83.0
Q ss_pred HHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHhhCC--CCCCHHHHHHHHHHH
Q 007573 406 ITFLSLLSACGHAGKVNESMDLFELMVKVYGIIPSSEHYTCLVDILSRAGQLEKAWQITQGMP--FEADTGVWGSLLAAC 483 (597)
Q Consensus 406 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~ 483 (597)
..+..+...+...|++++|.+.++++.+. .+.+...+..++..+.+.|++++|..+++++. .+.+...+..+...+
T Consensus 10 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~ 87 (125)
T 1na0_A 10 EAWYNLGNAYYKQGDYDEAIEYYQKALEL--DPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAY 87 (125)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHH
Confidence 45555666666677777777777766653 12345666677777777777777777776654 334566788888888
Q ss_pred HhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcC
Q 007573 484 VINLNVELGELAAKKMRELDPQNSAVYVMLSNLYAAAG 521 (597)
Q Consensus 484 ~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 521 (597)
...|++++|...++++++.+|.++..+..++.++...|
T Consensus 88 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 125 (125)
T 1na0_A 88 YKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQKQG 125 (125)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHC
T ss_pred HHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhcc
Confidence 89999999999999999999988888888888776654
No 128
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=98.72 E-value=1.5e-07 Score=76.57 Aligned_cols=116 Identities=10% Similarity=-0.031 Sum_probs=79.0
Q ss_pred hHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHhhCC--CCCCHHHHHHHHHH
Q 007573 405 GITFLSLLSACGHAGKVNESMDLFELMVKVYGIIPSSEHYTCLVDILSRAGQLEKAWQITQGMP--FEADTGVWGSLLAA 482 (597)
Q Consensus 405 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~ 482 (597)
...+..+...+...|++++|...+++..+. .+.+...+..+...|...|++++|.+.+++.. .+.+...+..+..+
T Consensus 16 ~~~~~~~~~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~ 93 (133)
T 2lni_A 16 ALMVKNKGNECFQKGDYPQAMKHYTEAIKR--NPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAAA 93 (133)
T ss_dssp HHHHHHHHHHHHHTTCSHHHHHHHHHHHTT--CTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHHHHHH
Confidence 344555555555566666666666655432 12235556666666666666666666666544 23356678888888
Q ss_pred HHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCC
Q 007573 483 CVINLNVELGELAAKKMRELDPQNSAVYVMLSNLYAAAGM 522 (597)
Q Consensus 483 ~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 522 (597)
+...|++++|+..++++++.+|.+...+..++.++...|+
T Consensus 94 ~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~ 133 (133)
T 2lni_A 94 LEAMKDYTKAMDVYQKALDLDSSCKEAADGYQRCMMAQYN 133 (133)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCGGGTHHHHHHHHHHHHHTC
T ss_pred HHHHhhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcC
Confidence 8889999999999999999999888888888888877664
No 129
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.72 E-value=2.2e-08 Score=93.98 Aligned_cols=192 Identities=7% Similarity=-0.056 Sum_probs=128.5
Q ss_pred ccHHHHHHHHHHhcCCHHHHHHHHhccC---CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHH
Q 007573 339 VSVCNAVITMYSRCGGILDSELAFRQIH---SPNLVSWNTIIAAFAQHGHYEKALIFFSQMGLNGFDPDGITFLSLLSAC 415 (597)
Q Consensus 339 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~ 415 (597)
...+..+...+.+.|++++|+..|++.. +.+...|..+...|...|++++|+..+++..+.. +.+...+..+..++
T Consensus 4 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~ 82 (281)
T 2c2l_A 4 AQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLGQCQ 82 (281)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHH
Confidence 3455666777778888888888887665 4467788888888889999999999998887652 33466788888888
Q ss_pred hccCcHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 007573 416 GHAGKVNESMDLFELMVKVYGIIPSSEHYTCLVDILSRAGQLEKAWQITQGMPFEADTGVWGSLLAACVINLNVELGELA 495 (597)
Q Consensus 416 ~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~ 495 (597)
...|++++|...|+.+.+...-.+ ..+...+....+..+...... .......++......+... ..|+.++|++.
T Consensus 83 ~~~g~~~~A~~~~~~al~l~p~~~--~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~i~~~l~~l--~~~~~~~A~~~ 157 (281)
T 2c2l_A 83 LEMESYDEAIANLQRAYSLAKEQR--LNFGDDIPSALRIAKKKRWNS-IEERRIHQESELHSYLTRL--IAAERERELEE 157 (281)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHTT--CCCCSHHHHHHHHHHHHHHHH-HHHTCCCCCCHHHHHHHHH--HHHHHHHHHTT
T ss_pred HHcCCHHHHHHHHHHHHHhCccch--hhHHHHHHHHHHHHHHHHHHH-HHHHHHhhhHHHHHHHHHH--HHHHHHHHHHH
Confidence 899999999999888775421111 111111222212111111112 2222333444444444332 26899999999
Q ss_pred HHHHHhcCCCCCchHHHHHHHHHhc-CCcHHHHHHHHHHHhC
Q 007573 496 AKKMRELDPQNSAVYVMLSNLYAAA-GMWRDVTRVRLLMKEQ 536 (597)
Q Consensus 496 ~~~~~~~~p~~~~~~~~l~~~~~~~-g~~~~A~~~~~~~~~~ 536 (597)
++++++.+|++......+...+.+. +.+++|.++|..+.+.
T Consensus 158 ~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~~ 199 (281)
T 2c2l_A 158 CQRNHEGHEDDGHIRAQQACIEAKHDKYMADMDELFSQVDEK 199 (281)
T ss_dssp TSGGGTTTSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHSSCT
T ss_pred HHhhhccccchhhhhhHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 9999999998877777777777776 7789999999887653
No 130
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=98.72 E-value=1.6e-07 Score=76.07 Aligned_cols=117 Identities=13% Similarity=-0.021 Sum_probs=89.2
Q ss_pred hHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHhhCC--CCCCHHHHHHHHHH
Q 007573 405 GITFLSLLSACGHAGKVNESMDLFELMVKVYGIIPSSEHYTCLVDILSRAGQLEKAWQITQGMP--FEADTGVWGSLLAA 482 (597)
Q Consensus 405 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~ 482 (597)
...+..+...+...|++++|...++.+.+. .+.+...+..+...+...|++++|.+.+++.. .+.+...+..++..
T Consensus 12 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ 89 (131)
T 2vyi_A 12 AERLKTEGNEQMKVENFEAAVHFYGKAIEL--NPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMGLA 89 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHccCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHHHHHHH
Confidence 345555666666777777777777776653 12346667777777777888888887777654 23356788888888
Q ss_pred HHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCc
Q 007573 483 CVINLNVELGELAAKKMRELDPQNSAVYVMLSNLYAAAGMW 523 (597)
Q Consensus 483 ~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~ 523 (597)
+...|++++|...++++++.+|+++..+..++.++...|++
T Consensus 90 ~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~ 130 (131)
T 2vyi_A 90 LSSLNKHVEAVAYYKKALELDPDNETYKSNLKIAELKLREA 130 (131)
T ss_dssp HHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTTC
T ss_pred HHHhCCHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHhcC
Confidence 99999999999999999999999988899999999888875
No 131
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=98.71 E-value=5.6e-07 Score=80.28 Aligned_cols=124 Identities=8% Similarity=-0.070 Sum_probs=67.9
Q ss_pred HHHHHHHHhcCCHHHHHHHHhccCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHhccCcHH
Q 007573 343 NAVITMYSRCGGILDSELAFRQIHSPNLVSWNTIIAAFAQHGHYEKALIFFSQMGLNGFDPDGITFLSLLSACGHAGKVN 422 (597)
Q Consensus 343 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~ 422 (597)
..+...+...|++++|...|++..+++...|..+...+...|++++|++.|++..+.. +.+...+..+..++...|+++
T Consensus 10 ~~~g~~~~~~~~~~~A~~~~~~a~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~~~ 88 (213)
T 1hh8_A 10 WNEGVLAADKKDWKGALDAFSAVQDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLYYQTEKYD 88 (213)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHTSSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcccHH
Confidence 3445555556666666666666555555566666666666666666666666555432 223445555555666666666
Q ss_pred HHHHHHHHhHHhcCC-------------CC-ChHHHHHHHHHHhhcCCHHHHHHHHhhC
Q 007573 423 ESMDLFELMVKVYGI-------------IP-SSEHYTCLVDILSRAGQLEKAWQITQGM 467 (597)
Q Consensus 423 ~a~~~~~~~~~~~~~-------------~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 467 (597)
+|.+.|+.+.+...- .| ....+..+..+|...|++++|.+.+++.
T Consensus 89 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 147 (213)
T 1hh8_A 89 LAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALA 147 (213)
T ss_dssp HHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 666666655542111 01 1245555556666666666666665554
No 132
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=98.69 E-value=2e-07 Score=89.81 Aligned_cols=95 Identities=14% Similarity=-0.007 Sum_probs=82.7
Q ss_pred hHHHHHHHHHHhhcCCHHHHHHHHhhCC-CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHH
Q 007573 441 SEHYTCLVDILSRAGQLEKAWQITQGMP-FEA-DTGVWGSLLAACVINLNVELGELAAKKMRELDPQNSAVYVMLSNLYA 518 (597)
Q Consensus 441 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 518 (597)
...|..+..+|.+.|++++|...+++.. ..| +...|..+..++...|++++|+..|+++++++|+++.++..++.++.
T Consensus 196 ~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~ 275 (336)
T 1p5q_A 196 LASHLNLAMCHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQ 275 (336)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
Confidence 4577788888889999999999888765 334 67789999999999999999999999999999999999999999999
Q ss_pred hcCCcHHH-HHHHHHHHh
Q 007573 519 AAGMWRDV-TRVRLLMKE 535 (597)
Q Consensus 519 ~~g~~~~A-~~~~~~~~~ 535 (597)
..|++++| .+.++.|.+
T Consensus 276 ~~~~~~~a~~~~~~~~~~ 293 (336)
T 1p5q_A 276 RIRRQLAREKKLYANMFE 293 (336)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 99999999 556777754
No 133
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=98.68 E-value=8.9e-07 Score=78.99 Aligned_cols=161 Identities=10% Similarity=-0.080 Sum_probs=121.3
Q ss_pred cccHHHHHHHHHHhcCCHHHHHHHHhccC-CCChhhHHHHHHHHHHcC----CHHHHHHHHHHHHHCCCCCChHHHHHHH
Q 007573 338 NVSVCNAVITMYSRCGGILDSELAFRQIH-SPNLVSWNTIIAAFAQHG----HYEKALIFFSQMGLNGFDPDGITFLSLL 412 (597)
Q Consensus 338 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~~~~~~li~~~~~~g----~~~~A~~~~~~m~~~g~~p~~~~~~~ll 412 (597)
+...+..|...|...+++++|...|++.. ..++..+..+...|.. + ++++|+++|++..+.| +...+..+.
T Consensus 17 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~~~g---~~~a~~~Lg 92 (212)
T 3rjv_A 17 DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQGDGDALALLAQLKIR-NPQQADYPQARQLAEKAVEAG---SKSGEIVLA 92 (212)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHHHTT---CHHHHHHHH
T ss_pred CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHHHCC---CHHHHHHHH
Confidence 44556666666767777777777777665 3456667777777766 6 8899999999987754 566777777
Q ss_pred HHHhc----cCcHHHHHHHHHHhHHhcCCCCC---hHHHHHHHHHHhh----cCCHHHHHHHHhhCC-CCCCHHHHHHHH
Q 007573 413 SACGH----AGKVNESMDLFELMVKVYGIIPS---SEHYTCLVDILSR----AGQLEKAWQITQGMP-FEADTGVWGSLL 480 (597)
Q Consensus 413 ~~~~~----~g~~~~a~~~~~~~~~~~~~~p~---~~~~~~l~~~~~~----~g~~~~A~~~~~~~~-~~p~~~~~~~l~ 480 (597)
..+.. .+++++|.+.|++..+. .|+ +..+..|..+|.. .++.++|...|++.. ..++...+..|.
T Consensus 93 ~~y~~g~g~~~d~~~A~~~~~~A~~~---~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~a~~~Lg 169 (212)
T 3rjv_A 93 RVLVNRQAGATDVAHAITLLQDAARD---SESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSSSLSRTGYAEYWAG 169 (212)
T ss_dssp HHHTCGGGSSCCHHHHHHHHHHHTSS---TTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHTSCTTHHHHHHH
T ss_pred HHHHcCCCCccCHHHHHHHHHHHHHc---CCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHcCCCHHHHHHHH
Confidence 77776 78999999999987643 342 6788888888888 789999999998875 335666778888
Q ss_pred HHHHhc-C-----CHHHHHHHHHHHHhcCCC
Q 007573 481 AACVIN-L-----NVELGELAAKKMRELDPQ 505 (597)
Q Consensus 481 ~~~~~~-g-----~~~~a~~~~~~~~~~~p~ 505 (597)
..|... | +.++|+..++++.+.+..
T Consensus 170 ~~y~~g~gg~~~~d~~~A~~~~~~A~~~g~~ 200 (212)
T 3rjv_A 170 MMFQQGEKGFIEPNKQKALHWLNVSCLEGFD 200 (212)
T ss_dssp HHHHHCBTTTBCCCHHHHHHHHHHHHHHTCH
T ss_pred HHHHcCCCCCCCCCHHHHHHHHHHHHHcCCH
Confidence 887643 3 899999999999988654
No 134
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=98.65 E-value=3.9e-07 Score=77.60 Aligned_cols=102 Identities=16% Similarity=0.054 Sum_probs=51.3
Q ss_pred HHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHhhCC-CCC-CHHHHHHHHHHH
Q 007573 406 ITFLSLLSACGHAGKVNESMDLFELMVKVYGIIPSSEHYTCLVDILSRAGQLEKAWQITQGMP-FEA-DTGVWGSLLAAC 483 (597)
Q Consensus 406 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~l~~~~ 483 (597)
..+..+...+...|++++|...|++..+.. +.+...|..+..+|.+.|++++|+..+++.. ..| +...|..+..++
T Consensus 12 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~ 89 (164)
T 3sz7_A 12 DKLKSEGNAAMARKEYSKAIDLYTQALSIA--PANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRLGLAR 89 (164)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 344445555555555555555555555421 1234445555555555555555555555443 222 344455555555
Q ss_pred HhcCCHHHHHHHHHHHHhcCCCCCch
Q 007573 484 VINLNVELGELAAKKMRELDPQNSAV 509 (597)
Q Consensus 484 ~~~g~~~~a~~~~~~~~~~~p~~~~~ 509 (597)
...|++++|+..++++++++|+++..
T Consensus 90 ~~~g~~~~A~~~~~~al~~~p~~~~~ 115 (164)
T 3sz7_A 90 FDMADYKGAKEAYEKGIEAEGNGGSD 115 (164)
T ss_dssp HHTTCHHHHHHHHHHHHHHHSSSCCH
T ss_pred HHccCHHHHHHHHHHHHHhCCCchHH
Confidence 55555555555555555555555443
No 135
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=98.63 E-value=1.3e-07 Score=75.79 Aligned_cols=95 Identities=17% Similarity=0.003 Sum_probs=82.2
Q ss_pred HHHHHHHHHhhcCCHHHHHHHHhhCC-CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhc
Q 007573 443 HYTCLVDILSRAGQLEKAWQITQGMP-FEA-DTGVWGSLLAACVINLNVELGELAAKKMRELDPQNSAVYVMLSNLYAAA 520 (597)
Q Consensus 443 ~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 520 (597)
.+..+...+.+.|++++|...+++.. ..| +...|..+..++...|++++|+..++++++++|+++.++..++.+|...
T Consensus 19 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~~ 98 (121)
T 1hxi_A 19 NPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNE 98 (121)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Confidence 34556777888999999999998876 444 6778899999999999999999999999999999999999999999999
Q ss_pred CCcHHHHHHHHHHHhCC
Q 007573 521 GMWRDVTRVRLLMKEQG 537 (597)
Q Consensus 521 g~~~~A~~~~~~~~~~~ 537 (597)
|++++|++.+++..+..
T Consensus 99 g~~~~A~~~~~~al~~~ 115 (121)
T 1hxi_A 99 HNANAALASLRAWLLSQ 115 (121)
T ss_dssp HHHHHHHHHHHHHHC--
T ss_pred CCHHHHHHHHHHHHHhC
Confidence 99999999999987654
No 136
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.62 E-value=2.8e-07 Score=84.33 Aligned_cols=124 Identities=8% Similarity=-0.077 Sum_probs=77.1
Q ss_pred HHHHHhccCcHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHhhCCCCCCH----HHHHHHHHHHHhc
Q 007573 411 LLSACGHAGKVNESMDLFELMVKVYGIIPSSEHYTCLVDILSRAGQLEKAWQITQGMPFEADT----GVWGSLLAACVIN 486 (597)
Q Consensus 411 ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~----~~~~~l~~~~~~~ 486 (597)
+...+...|++++|.++|+.+.. ..|+......+...+.+.|++++|+..|+.....|+. ..+..+..++...
T Consensus 108 yA~~L~~~g~y~eA~~~l~~~~~---~~p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~d~~~~~~a~~~LG~al~~L 184 (282)
T 4f3v_A 108 FAACEAAQGNYADAMEALEAAPV---AGSEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWPDKFLAGAAGVAHGVAAANL 184 (282)
T ss_dssp HHHHHHHHTCHHHHHHHHTSSCC---TTCHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCSCHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHCCCHHHHHHHHHHHHh---cCCchHHHHHHHHHHHHcCCHHHHHHHHHHhhccCCcccHHHHHHHHHHHHHHC
Confidence 44556666777777777765543 2343324445555667777777777777655422322 2566666677777
Q ss_pred CCHHHHHHHHHHHHhcC--CC-CCchHHHHHHHHHhcCCcHHHHHHHHHHHhCC
Q 007573 487 LNVELGELAAKKMRELD--PQ-NSAVYVMLSNLYAAAGMWRDVTRVRLLMKEQG 537 (597)
Q Consensus 487 g~~~~a~~~~~~~~~~~--p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 537 (597)
|++++|+..|+++.... |. .+......+.++.+.|+.++|...|+++....
T Consensus 185 G~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~ 238 (282)
T 4f3v_A 185 ALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTH 238 (282)
T ss_dssp TCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS
T ss_pred CCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 77777777777776432 33 23456677777777777777777777776643
No 137
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=98.62 E-value=2.2e-07 Score=72.93 Aligned_cols=98 Identities=11% Similarity=-0.036 Sum_probs=81.9
Q ss_pred hHHHHHHHHHHhhcCCHHHHHHHHhhCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC--CCchHHHHHHH
Q 007573 441 SEHYTCLVDILSRAGQLEKAWQITQGMP--FEADTGVWGSLLAACVINLNVELGELAAKKMRELDPQ--NSAVYVMLSNL 516 (597)
Q Consensus 441 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~--~~~~~~~l~~~ 516 (597)
...+..+...+.+.|++++|...+++.. .+.+...|..+...+...|++++|+..++++++..|. ++.++..++.+
T Consensus 6 ~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l~~~ 85 (112)
T 2kck_A 6 PEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAKADA 85 (112)
T ss_dssp TTGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHHHHHH
Confidence 4556667777888888888888887754 3345678888888899999999999999999999999 88899999999
Q ss_pred HHhc-CCcHHHHHHHHHHHhCCC
Q 007573 517 YAAA-GMWRDVTRVRLLMKEQGV 538 (597)
Q Consensus 517 ~~~~-g~~~~A~~~~~~~~~~~~ 538 (597)
+... |++++|.+.++.+.....
T Consensus 86 ~~~~~~~~~~A~~~~~~~~~~~p 108 (112)
T 2kck_A 86 LRYIEGKEVEAEIAEARAKLEHH 108 (112)
T ss_dssp HTTCSSCSHHHHHHHHHHGGGCC
T ss_pred HHHHhCCHHHHHHHHHHHhhccc
Confidence 9999 999999999999887654
No 138
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=98.61 E-value=4.6e-07 Score=75.53 Aligned_cols=104 Identities=10% Similarity=-0.058 Sum_probs=87.9
Q ss_pred CCC-hHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHhhCC-CCC-CHHHHHH
Q 007573 402 DPD-GITFLSLLSACGHAGKVNESMDLFELMVKVYGIIPSSEHYTCLVDILSRAGQLEKAWQITQGMP-FEA-DTGVWGS 478 (597)
Q Consensus 402 ~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~ 478 (597)
.|+ ...+..+...+.+.|++++|...|+.+.+. -+.+...|..+..+|...|++++|.+.|++.. ..| ++..|..
T Consensus 32 ~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~--~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~~~~~~~ 109 (151)
T 3gyz_A 32 PDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIY--DFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTPVFH 109 (151)
T ss_dssp CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSCCHHHHH
T ss_pred CHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCCcHHHHH
Confidence 444 446777788889999999999999999864 23357889999999999999999999998876 444 5778999
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcCCCCC
Q 007573 479 LLAACVINLNVELGELAAKKMRELDPQNS 507 (597)
Q Consensus 479 l~~~~~~~g~~~~a~~~~~~~~~~~p~~~ 507 (597)
+..++...|++++|+..|++++++.|+++
T Consensus 110 lg~~~~~lg~~~eA~~~~~~al~l~~~~~ 138 (151)
T 3gyz_A 110 TGQCQLRLKAPLKAKECFELVIQHSNDEK 138 (151)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCCCHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCHH
Confidence 99999999999999999999999998754
No 139
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=98.60 E-value=4.5e-07 Score=74.37 Aligned_cols=99 Identities=10% Similarity=-0.052 Sum_probs=83.4
Q ss_pred CChHHHHHHHHHHhhcCCHHHHHHHHhhCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHH
Q 007573 439 PSSEHYTCLVDILSRAGQLEKAWQITQGMP--FEADTGVWGSLLAACVINLNVELGELAAKKMRELDPQNSAVYVMLSNL 516 (597)
Q Consensus 439 p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 516 (597)
.+...+..+...+...|++++|...+++.. .+.+...|..+..++...|++++|+..++++++++|+++.++..++.+
T Consensus 7 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 86 (137)
T 3q49_B 7 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQC 86 (137)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHHHHH
Confidence 346677778888888888888888887754 333567888888889999999999999999999999999999999999
Q ss_pred HHhcCCcHHHHHHHHHHHhCC
Q 007573 517 YAAAGMWRDVTRVRLLMKEQG 537 (597)
Q Consensus 517 ~~~~g~~~~A~~~~~~~~~~~ 537 (597)
|...|++++|.+.+++..+..
T Consensus 87 ~~~~~~~~~A~~~~~~a~~~~ 107 (137)
T 3q49_B 87 QLEMESYDEAIANLQRAYSLA 107 (137)
T ss_dssp HHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHhhHHHHHHHHHHHHHHC
Confidence 999999999999999887644
No 140
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=98.60 E-value=1.1e-07 Score=79.27 Aligned_cols=104 Identities=12% Similarity=-0.014 Sum_probs=83.5
Q ss_pred hHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHhhCC-CCC-CHHHHHHHHHH
Q 007573 405 GITFLSLLSACGHAGKVNESMDLFELMVKVYGIIPSSEHYTCLVDILSRAGQLEKAWQITQGMP-FEA-DTGVWGSLLAA 482 (597)
Q Consensus 405 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~l~~~ 482 (597)
...+..+...+...|++++|...|+.+... -+.+...|..+..+|...|++++|.+.+++.. ..| +...+..+..+
T Consensus 21 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~ 98 (148)
T 2vgx_A 21 LEQLYSLAFNQYQSGXYEDAHXVFQALCVL--DHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIXEPRFPFHAAEC 98 (148)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHc--CcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHH
Confidence 445666777788888888888888888764 23357778888888888999999988888765 334 56788889999
Q ss_pred HHhcCCHHHHHHHHHHHHhcCCCCCchH
Q 007573 483 CVINLNVELGELAAKKMRELDPQNSAVY 510 (597)
Q Consensus 483 ~~~~g~~~~a~~~~~~~~~~~p~~~~~~ 510 (597)
+...|++++|+..++++++++|+++...
T Consensus 99 ~~~~g~~~~A~~~~~~al~~~p~~~~~~ 126 (148)
T 2vgx_A 99 LLQXGELAEAESGLFLAQELIANXPEFX 126 (148)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHTTCGGGH
T ss_pred HHHcCCHHHHHHHHHHHHHHCcCCCcch
Confidence 9999999999999999999999887653
No 141
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=98.59 E-value=2.4e-07 Score=74.95 Aligned_cols=94 Identities=9% Similarity=-0.061 Sum_probs=77.2
Q ss_pred HHHHHHHHHHhhcCCHHHHHHHHhhCC-CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCC-------chHHH
Q 007573 442 EHYTCLVDILSRAGQLEKAWQITQGMP-FEA-DTGVWGSLLAACVINLNVELGELAAKKMRELDPQNS-------AVYVM 512 (597)
Q Consensus 442 ~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~-------~~~~~ 512 (597)
..+..+...+.+.|++++|++.|++.. ..| +...|..+..+|...|++++|+..++++++++|+++ .+|..
T Consensus 9 ~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~ 88 (127)
T 4gcn_A 9 IAEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMSR 88 (127)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHHH
Confidence 355667888888888888888888765 344 567888899999999999999999999999888764 36777
Q ss_pred HHHHHHhcCCcHHHHHHHHHHHh
Q 007573 513 LSNLYAAAGMWRDVTRVRLLMKE 535 (597)
Q Consensus 513 l~~~~~~~g~~~~A~~~~~~~~~ 535 (597)
++.++...|++++|++.|++..+
T Consensus 89 lg~~~~~~~~~~~A~~~~~kal~ 111 (127)
T 4gcn_A 89 AGNAFQKQNDLSLAVQWFHRSLS 111 (127)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHh
Confidence 88889999999999999988765
No 142
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=98.57 E-value=5.2e-06 Score=78.23 Aligned_cols=158 Identities=11% Similarity=-0.068 Sum_probs=120.2
Q ss_pred HHHHHHhcCCHHHHHHHHhccCC---CChh------hHHHHHHHHHHcCCHHHHHHHHHHHHHCCCC-CC----hHHHHH
Q 007573 345 VITMYSRCGGILDSELAFRQIHS---PNLV------SWNTIIAAFAQHGHYEKALIFFSQMGLNGFD-PD----GITFLS 410 (597)
Q Consensus 345 l~~~~~~~g~~~~A~~~~~~~~~---~~~~------~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-p~----~~~~~~ 410 (597)
.+..+...|++++|...+++... .+.. .+..+...+...|++++|+..+++..+.... ++ ..+++.
T Consensus 81 ~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~ 160 (293)
T 3u3w_A 81 QVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENA 160 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHH
Confidence 46678889999999999988652 1111 2334666677788999999999999874322 23 236888
Q ss_pred HHHHHhccCcHHHHHHHHHHhHHhcC----CCCC-hHHHHHHHHHHhhcCCHHHHHHHHhhCC-------CCCC-HHHHH
Q 007573 411 LLSACGHAGKVNESMDLFELMVKVYG----IIPS-SEHYTCLVDILSRAGQLEKAWQITQGMP-------FEAD-TGVWG 477 (597)
Q Consensus 411 ll~~~~~~g~~~~a~~~~~~~~~~~~----~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~-------~~p~-~~~~~ 477 (597)
+..++...|++++|...|+++.+... ..+. ..++..+...|.+.|++++|.+.+++.. ..+. ..+|.
T Consensus 161 lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~ 240 (293)
T 3u3w_A 161 IANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYY 240 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHH
Confidence 99999999999999999999875321 1122 3478889999999999999999988754 1222 56889
Q ss_pred HHHHHHHhcC-CHHHHHHHHHHHHhc
Q 007573 478 SLLAACVINL-NVELGELAAKKMREL 502 (597)
Q Consensus 478 ~l~~~~~~~g-~~~~a~~~~~~~~~~ 502 (597)
.++.++...| ++++|...+++++++
T Consensus 241 ~lg~~~~~~g~~~~~A~~~~~~Al~i 266 (293)
T 3u3w_A 241 QRGECLRKLEYEEAEIEDAYKKASFF 266 (293)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCcHHHHHHHHHHHHHH
Confidence 9999999999 579999999999864
No 143
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.57 E-value=1.9e-06 Score=76.06 Aligned_cols=153 Identities=9% Similarity=-0.034 Sum_probs=90.9
Q ss_pred HcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHhccCcHHHHHHHHHHhHHhc---CCCC-ChHHHHHHHHHHhhcCCH
Q 007573 382 QHGHYEKALIFFSQMGLNGFDPDGITFLSLLSACGHAGKVNESMDLFELMVKVY---GIIP-SSEHYTCLVDILSRAGQL 457 (597)
Q Consensus 382 ~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~---~~~p-~~~~~~~l~~~~~~~g~~ 457 (597)
..|++++|.+.++.+.. .......++..+...+...|++++|...+++..+.. +..| ....+..+...|...|++
T Consensus 4 ~~g~~~~A~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 82 (203)
T 3gw4_A 4 EAHDYALAERQAQALLA-HPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNW 82 (203)
T ss_dssp ---CHHHHHHHHHHHHT-STTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCH
T ss_pred ccccHHHHHHHHHHhcC-ChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCH
Confidence 34566666664333322 111224455555566666666666666666554421 1111 134566666777777777
Q ss_pred HHHHHHHhhCC----CCC-C----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC--CC----CchHHHHHHHHHhcCC
Q 007573 458 EKAWQITQGMP----FEA-D----TGVWGSLLAACVINLNVELGELAAKKMRELDP--QN----SAVYVMLSNLYAAAGM 522 (597)
Q Consensus 458 ~~A~~~~~~~~----~~p-~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p--~~----~~~~~~l~~~~~~~g~ 522 (597)
++|.+.+++.. ..+ + ...+..+...+...|++++|...++++++..+ .+ ..++..++.++...|+
T Consensus 83 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~ 162 (203)
T 3gw4_A 83 DAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKN 162 (203)
T ss_dssp HHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcC
Confidence 77777766543 112 2 23566777778888888888888888876532 12 2335778888888888
Q ss_pred cHHHHHHHHHHHh
Q 007573 523 WRDVTRVRLLMKE 535 (597)
Q Consensus 523 ~~~A~~~~~~~~~ 535 (597)
+++|.+.+++..+
T Consensus 163 ~~~A~~~~~~al~ 175 (203)
T 3gw4_A 163 LLEAQQHWLRARD 175 (203)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 8888888887765
No 144
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.55 E-value=6.9e-07 Score=70.72 Aligned_cols=94 Identities=11% Similarity=-0.015 Sum_probs=59.5
Q ss_pred HHHHHHHHHHhhcCCHHHHHHHHhhCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHh
Q 007573 442 EHYTCLVDILSRAGQLEKAWQITQGMP--FEADTGVWGSLLAACVINLNVELGELAAKKMRELDPQNSAVYVMLSNLYAA 519 (597)
Q Consensus 442 ~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~ 519 (597)
..+..++..+...|++++|.+.+++.. .+.+...+..+...+...|++++|...++++++.+|.++..+..++.++..
T Consensus 5 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~ 84 (118)
T 1elw_A 5 NELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALEF 84 (118)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHHHHH
Confidence 344555555666666666666665543 223455666666666666677777777777776666666666666777777
Q ss_pred cCCcHHHHHHHHHHHh
Q 007573 520 AGMWRDVTRVRLLMKE 535 (597)
Q Consensus 520 ~g~~~~A~~~~~~~~~ 535 (597)
.|++++|.+.+++..+
T Consensus 85 ~~~~~~A~~~~~~~~~ 100 (118)
T 1elw_A 85 LNRFEEAKRTYEEGLK 100 (118)
T ss_dssp TTCHHHHHHHHHHHHT
T ss_pred HhhHHHHHHHHHHHHH
Confidence 7777777776666654
No 145
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=98.54 E-value=6e-07 Score=79.14 Aligned_cols=168 Identities=9% Similarity=-0.100 Sum_probs=100.7
Q ss_pred HHhcCCHHHHHHHHhccCC---CChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHhccCcHHHHH
Q 007573 349 YSRCGGILDSELAFRQIHS---PNLVSWNTIIAAFAQHGHYEKALIFFSQMGLNGFDPDGITFLSLLSACGHAGKVNESM 425 (597)
Q Consensus 349 ~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~ 425 (597)
....|+++++.+.++.-.. .....+..+...+...|++++|+..|++..... |+...+... ....-.
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~--~~~~~~~~~--------~~~~~~ 83 (198)
T 2fbn_A 14 RENLYFQGAKKSIYDYTDEEKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFF--IHTEEWDDQ--------ILLDKK 83 (198)
T ss_dssp --------CCCSGGGCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT--TTCTTCCCH--------HHHHHH
T ss_pred hhhhhhccccCchhhCCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH--hcccccchh--------hHHHHH
Confidence 3344555555555543321 233456666667777777777777777776542 211100000 000000
Q ss_pred HHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHhhCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 007573 426 DLFELMVKVYGIIPSSEHYTCLVDILSRAGQLEKAWQITQGMP--FEADTGVWGSLLAACVINLNVELGELAAKKMRELD 503 (597)
Q Consensus 426 ~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 503 (597)
.. .....+..+..+|.+.|++++|...+++.. .+.+...+..+..++...|++++|+..++++++++
T Consensus 84 ---~~--------~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~ 152 (198)
T 2fbn_A 84 ---KN--------IEISCNLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLN 152 (198)
T ss_dssp ---HH--------HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS
T ss_pred ---HH--------HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHC
Confidence 00 012566777788888888888888887765 33457788899999999999999999999999999
Q ss_pred CCCCchHHHHHHHHHhcCCcHHHH-HHHHHHHhCC
Q 007573 504 PQNSAVYVMLSNLYAAAGMWRDVT-RVRLLMKEQG 537 (597)
Q Consensus 504 p~~~~~~~~l~~~~~~~g~~~~A~-~~~~~~~~~~ 537 (597)
|+++.++..++.++...|+.+++. ..++.+...+
T Consensus 153 p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~f~~~ 187 (198)
T 2fbn_A 153 PNNLDIRNSYELCVNKLKEARKKDKLTFGGMFDKG 187 (198)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHC-------------
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 999999999999999988888777 5566665443
No 146
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=98.53 E-value=9.8e-07 Score=71.68 Aligned_cols=97 Identities=11% Similarity=0.015 Sum_probs=88.3
Q ss_pred ChHHHHHHHHHHhhcCCHHHHHHHHhhCC-CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHH
Q 007573 440 SSEHYTCLVDILSRAGQLEKAWQITQGMP-FEA-DTGVWGSLLAACVINLNVELGELAAKKMRELDPQNSAVYVMLSNLY 517 (597)
Q Consensus 440 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 517 (597)
+...+..+...+.+.|++++|.+.+++.. ..| +...+..+...+...|++++|+..++++++.+|.++.++..++.++
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~ 94 (133)
T 2lni_A 15 LALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAAAL 94 (133)
T ss_dssp HHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHHHHHHH
Confidence 46778889999999999999999998865 444 6778999999999999999999999999999999999999999999
Q ss_pred HhcCCcHHHHHHHHHHHhC
Q 007573 518 AAAGMWRDVTRVRLLMKEQ 536 (597)
Q Consensus 518 ~~~g~~~~A~~~~~~~~~~ 536 (597)
...|++++|.+.+++..+.
T Consensus 95 ~~~~~~~~A~~~~~~~~~~ 113 (133)
T 2lni_A 95 EAMKDYTKAMDVYQKALDL 113 (133)
T ss_dssp HHTTCHHHHHHHHHHHHHH
T ss_pred HHHhhHHHHHHHHHHHHHh
Confidence 9999999999999998764
No 147
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.53 E-value=3.6e-07 Score=83.55 Aligned_cols=136 Identities=12% Similarity=-0.027 Sum_probs=101.1
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCC--hHHHHHHHHH
Q 007573 373 WNTIIAAFAQHGHYEKALIFFSQMGLNGFDPDGITFLSLLSACGHAGKVNESMDLFELMVKVYGIIPS--SEHYTCLVDI 450 (597)
Q Consensus 373 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~--~~~~~~l~~~ 450 (597)
+-.....+...|++++|.++|..+... .|+......+...+.+.+++++|+..|+...+. . .|. ...+..+..+
T Consensus 105 ~LayA~~L~~~g~y~eA~~~l~~~~~~--~p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~-~-d~~~~~~a~~~LG~a 180 (282)
T 4f3v_A 105 TMGFAACEAAQGNYADAMEALEAAPVA--GSEHLVAWMKAVVYGAAERWTDVIDQVKSAGKW-P-DKFLAGAAGVAHGVA 180 (282)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHTSSCCT--TCHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGC-S-CHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhc--CCchHHHHHHHHHHHHcCCHHHHHHHHHHhhcc-C-CcccHHHHHHHHHHH
Confidence 344566778889999999999887754 455445555666788899999999999755321 1 111 2367778889
Q ss_pred HhhcCCHHHHHHHHhhCCCC---CC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHH
Q 007573 451 LSRAGQLEKAWQITQGMPFE---AD--TGVWGSLLAACVINLNVELGELAAKKMRELDPQNSAVYVML 513 (597)
Q Consensus 451 ~~~~g~~~~A~~~~~~~~~~---p~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l 513 (597)
+.+.|++++|++.|++.... |. ...+.....++.+.|+.++|...|+++++.+|+ +.+...|
T Consensus 181 l~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~P~-~~~~~aL 247 (282)
T 4f3v_A 181 AANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTHPE-PKVAAAL 247 (282)
T ss_dssp HHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSCC-HHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc-HHHHHHH
Confidence 99999999999999887412 43 346777888899999999999999999999998 6554444
No 148
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=98.52 E-value=6.1e-07 Score=77.42 Aligned_cols=127 Identities=11% Similarity=0.057 Sum_probs=98.6
Q ss_pred HHcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChHHHHHHHHH-HhhcCCH--
Q 007573 381 AQHGHYEKALIFFSQMGLNGFDPDGITFLSLLSACGHAGKVNESMDLFELMVKVYGIIPSSEHYTCLVDI-LSRAGQL-- 457 (597)
Q Consensus 381 ~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~-~~~~g~~-- 457 (597)
...|++++|+..+++..+.. +.+...+..+...+...|++++|...|+.+.+.. +.+...+..+..+ +...|++
T Consensus 21 ~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~la~~l~~~~~~~~~ 97 (177)
T 2e2e_A 21 ASQQNPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLR--GENAELYAALATVLYYQASQHMT 97 (177)
T ss_dssp C-----CCCCHHHHHHHHHC-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH--CSCHHHHHHHHHHHHHHTTTCCC
T ss_pred hhccCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--CCCHHHHHHHHHHHHHhcCCcch
Confidence 34678888888888877653 3456778888888889999999999999887642 2356777788888 7788998
Q ss_pred HHHHHHHhhCC-CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchH
Q 007573 458 EKAWQITQGMP-FEA-DTGVWGSLLAACVINLNVELGELAAKKMRELDPQNSAVY 510 (597)
Q Consensus 458 ~~A~~~~~~~~-~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~ 510 (597)
++|...+++.. ..| +...+..+...+...|++++|+..++++++.+|+++...
T Consensus 98 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 152 (177)
T 2e2e_A 98 AQTRAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMDLNSPRINRT 152 (177)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTSCHH
T ss_pred HHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCccHH
Confidence 99999988765 344 567888899999999999999999999999999986543
No 149
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=98.52 E-value=5.8e-06 Score=77.88 Aligned_cols=162 Identities=11% Similarity=-0.029 Sum_probs=119.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHhccC---CCCh------hhHHHHHHHHHHcCCHHHHHHHHHHHHHCCC---CCC--hH
Q 007573 341 VCNAVITMYSRCGGILDSELAFRQIH---SPNL------VSWNTIIAAFAQHGHYEKALIFFSQMGLNGF---DPD--GI 406 (597)
Q Consensus 341 ~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~------~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~---~p~--~~ 406 (597)
.+...+..+...|++++|.+.+.... +... ..+..+...+...|++++|+..+++..+... .+. ..
T Consensus 77 ~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 156 (293)
T 2qfc_A 77 QFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLY 156 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHH
Confidence 34445677888899999988887543 1111 2234455667788899999999999875321 222 34
Q ss_pred HHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCC-----hHHHHHHHHHHhhcCCHHHHHHHHhhCC-CCC-------CH
Q 007573 407 TFLSLLSACGHAGKVNESMDLFELMVKVYGIIPS-----SEHYTCLVDILSRAGQLEKAWQITQGMP-FEA-------DT 473 (597)
Q Consensus 407 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p-------~~ 473 (597)
+++.+...+...|++++|...++++.+.....|+ ..++..++..|.+.|++++|.+.+++.. ..+ -.
T Consensus 157 ~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~ 236 (293)
T 2qfc_A 157 IENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIG 236 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHH
Confidence 7888899999999999999999998743211222 2578889999999999999999998754 111 15
Q ss_pred HHHHHHHHHHHhcCCHHHH-HHHHHHHHhc
Q 007573 474 GVWGSLLAACVINLNVELG-ELAAKKMREL 502 (597)
Q Consensus 474 ~~~~~l~~~~~~~g~~~~a-~~~~~~~~~~ 502 (597)
.++..++..+...|++++| ...+++++++
T Consensus 237 ~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~~ 266 (293)
T 2qfc_A 237 QLYYQRGECLRKLEYEEAEIEDAYKKASFF 266 (293)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCcHHHHHHHHHHHHHH
Confidence 6788899999999999999 7889988764
No 150
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.52 E-value=9.4e-07 Score=70.74 Aligned_cols=97 Identities=20% Similarity=0.185 Sum_probs=87.9
Q ss_pred hHHHHHHHHHHhhcCCHHHHHHHHhhCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHH
Q 007573 441 SEHYTCLVDILSRAGQLEKAWQITQGMP--FEADTGVWGSLLAACVINLNVELGELAAKKMRELDPQNSAVYVMLSNLYA 518 (597)
Q Consensus 441 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 518 (597)
...+..++..+...|++++|.+.++++. .+.+..++..+...+...|++++|+..++++++..|.++..+..++.+|.
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~ 88 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYY 88 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHH
Confidence 5678888999999999999999998875 34467789999999999999999999999999999999999999999999
Q ss_pred hcCCcHHHHHHHHHHHhCC
Q 007573 519 AAGMWRDVTRVRLLMKEQG 537 (597)
Q Consensus 519 ~~g~~~~A~~~~~~~~~~~ 537 (597)
..|++++|.+.++++.+..
T Consensus 89 ~~~~~~~A~~~~~~~~~~~ 107 (125)
T 1na0_A 89 KQGDYDEAIEYYQKALELD 107 (125)
T ss_dssp HTTCHHHHHHHHHHHHHHC
T ss_pred HhcCHHHHHHHHHHHHHhC
Confidence 9999999999999987643
No 151
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.52 E-value=1.5e-06 Score=68.73 Aligned_cols=110 Identities=11% Similarity=0.054 Sum_probs=78.4
Q ss_pred HHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHhhCC-CCC-CHHHHHHHHHHH
Q 007573 406 ITFLSLLSACGHAGKVNESMDLFELMVKVYGIIPSSEHYTCLVDILSRAGQLEKAWQITQGMP-FEA-DTGVWGSLLAAC 483 (597)
Q Consensus 406 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~l~~~~ 483 (597)
..+..+...+...|++++|...++...+. .+.+...+..+...+...|++++|...+++.. ..| +...+..+..++
T Consensus 5 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~ 82 (118)
T 1elw_A 5 NELKEKGNKALSVGNIDDALQCYSEAIKL--DPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAAL 82 (118)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHH--CCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHHH
Confidence 34555556666667777777777766653 12345666677777777777777777776654 233 566788888888
Q ss_pred HhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHH
Q 007573 484 VINLNVELGELAAKKMRELDPQNSAVYVMLSNLY 517 (597)
Q Consensus 484 ~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 517 (597)
...|++++|...++++++.+|+++..+..++.+.
T Consensus 83 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 116 (118)
T 1elw_A 83 EFLNRFEEAKRTYEEGLKHEANNPQLKEGLQNME 116 (118)
T ss_dssp HHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHH
T ss_pred HHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHhh
Confidence 9999999999999999999998877777666553
No 152
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=98.50 E-value=2.1e-06 Score=69.33 Aligned_cols=98 Identities=12% Similarity=-0.030 Sum_probs=88.0
Q ss_pred ChHHHHHHHHHHhhcCCHHHHHHHHhhCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHH
Q 007573 440 SSEHYTCLVDILSRAGQLEKAWQITQGMP--FEADTGVWGSLLAACVINLNVELGELAAKKMRELDPQNSAVYVMLSNLY 517 (597)
Q Consensus 440 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 517 (597)
+...+..++..+...|++++|.+.+++.. .+.+...+..+...+...|++++|+..++++++..|+++..+..++.++
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (131)
T 2vyi_A 11 EAERLKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMGLAL 90 (131)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHHHHHHHH
Confidence 35677788899999999999999998875 3446778999999999999999999999999999999999999999999
Q ss_pred HhcCCcHHHHHHHHHHHhCC
Q 007573 518 AAAGMWRDVTRVRLLMKEQG 537 (597)
Q Consensus 518 ~~~g~~~~A~~~~~~~~~~~ 537 (597)
...|++++|.+.+++..+..
T Consensus 91 ~~~~~~~~A~~~~~~~~~~~ 110 (131)
T 2vyi_A 91 SSLNKHVEAVAYYKKALELD 110 (131)
T ss_dssp HHTTCHHHHHHHHHHHHHHS
T ss_pred HHhCCHHHHHHHHHHHHhcC
Confidence 99999999999999987743
No 153
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=98.49 E-value=1.1e-06 Score=70.86 Aligned_cols=110 Identities=7% Similarity=-0.080 Sum_probs=78.7
Q ss_pred HHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHhhCC-CCC-CHHHHHHHHHHH
Q 007573 406 ITFLSLLSACGHAGKVNESMDLFELMVKVYGIIPSSEHYTCLVDILSRAGQLEKAWQITQGMP-FEA-DTGVWGSLLAAC 483 (597)
Q Consensus 406 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~l~~~~ 483 (597)
..+......+.+.|++++|...|++..+. .+.+...|..+..+|.+.|++++|...+++.. ..| +...|..+..++
T Consensus 5 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~ 82 (126)
T 3upv_A 5 EEARLEGKEYFTKSDWPNAVKAYTEMIKR--APEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQ 82 (126)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHH
Confidence 34555556666777777777777776653 12346677777777777777777777777654 334 566888888889
Q ss_pred HhcCCHHHHHHHHHHHHhcC------CCCCchHHHHHHHH
Q 007573 484 VINLNVELGELAAKKMRELD------PQNSAVYVMLSNLY 517 (597)
Q Consensus 484 ~~~g~~~~a~~~~~~~~~~~------p~~~~~~~~l~~~~ 517 (597)
...|++++|+..++++++++ |.++.+...+..+.
T Consensus 83 ~~~~~~~~A~~~~~~al~~~p~~~~~p~~~~~~~~l~~~~ 122 (126)
T 3upv_A 83 IAVKEYASALETLDAARTKDAEVNNGSSAREIDQLYYKAS 122 (126)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHHH
T ss_pred HHHhCHHHHHHHHHHHHHhCcccCCchhHHHHHHHHHHHH
Confidence 99999999999999999988 77666666665544
No 154
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=98.48 E-value=1.1e-06 Score=74.55 Aligned_cols=64 Identities=8% Similarity=0.013 Sum_probs=58.3
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCcHHHHHHHHHHHhC
Q 007573 473 TGVWGSLLAACVINLNVELGELAAKKMRELDPQNSAVYVMLSNLYAAAGMWRDVTRVRLLMKEQ 536 (597)
Q Consensus 473 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 536 (597)
...|..+..++...|++++|+..++++++++|.++.+|..++.+|...|++++|.+.+++..+.
T Consensus 63 ~~~~~nla~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l 126 (162)
T 3rkv_A 63 IPLYANMSQCYLNIGDLHEAEETSSEVLKREETNEKALFRRAKARIAAWKLDEAEEDLKLLLRN 126 (162)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhc
Confidence 4578888889999999999999999999999999999999999999999999999999988764
No 155
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=98.48 E-value=8.4e-07 Score=73.36 Aligned_cols=106 Identities=13% Similarity=0.020 Sum_probs=79.1
Q ss_pred HHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHhhCC-CCC-CHHHHHHHHHHH
Q 007573 406 ITFLSLLSACGHAGKVNESMDLFELMVKVYGIIPSSEHYTCLVDILSRAGQLEKAWQITQGMP-FEA-DTGVWGSLLAAC 483 (597)
Q Consensus 406 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~l~~~~ 483 (597)
..+..+...+.+.|++++|...|+.+.+. -+.+...|..+..+|.+.|++++|...+++.. ..| +...+..+..++
T Consensus 19 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~ 96 (142)
T 2xcb_A 19 EQLYALGFNQYQAGKWDDAQKIFQALCML--DHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDINEPRFPFHAAECH 96 (142)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccHHHHHHHHHHHHHh--CCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHH
Confidence 34555566677777888888887777653 12346677777788888888888888887765 333 566788888899
Q ss_pred HhcCCHHHHHHHHHHHHhcCCCCCchHHHH
Q 007573 484 VINLNVELGELAAKKMRELDPQNSAVYVML 513 (597)
Q Consensus 484 ~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l 513 (597)
...|++++|+..++++++++|+++......
T Consensus 97 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~~ 126 (142)
T 2xcb_A 97 LQLGDLDGAESGFYSARALAAAQPAHEALA 126 (142)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHTCGGGHHHH
T ss_pred HHcCCHHHHHHHHHHHHHhCCCCcchHHHH
Confidence 999999999999999999999887655443
No 156
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.47 E-value=1.1e-06 Score=77.54 Aligned_cols=153 Identities=12% Similarity=0.030 Sum_probs=106.4
Q ss_pred hcCCHHHHHH---HHhccCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHH----CCCCC-ChHHHHHHHHHHhccCcHH
Q 007573 351 RCGGILDSEL---AFRQIHSPNLVSWNTIIAAFAQHGHYEKALIFFSQMGL----NGFDP-DGITFLSLLSACGHAGKVN 422 (597)
Q Consensus 351 ~~g~~~~A~~---~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~----~g~~p-~~~~~~~ll~~~~~~g~~~ 422 (597)
..|++++|.+ .+..-......++..+...+...|++++|+..+++... .+..| ...++..+...+...|+++
T Consensus 4 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 83 (203)
T 3gw4_A 4 EAHDYALAERQAQALLAHPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWD 83 (203)
T ss_dssp ---CHHHHHHHHHHHHTSTTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred ccccHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCHH
Confidence 4577777777 55443333456777788888888888888888887765 12122 2446777778888899999
Q ss_pred HHHHHHHHhHHhcCCCC-C----hHHHHHHHHHHhhcCCHHHHHHHHhhCC----CCCC----HHHHHHHHHHHHhcCCH
Q 007573 423 ESMDLFELMVKVYGIIP-S----SEHYTCLVDILSRAGQLEKAWQITQGMP----FEAD----TGVWGSLLAACVINLNV 489 (597)
Q Consensus 423 ~a~~~~~~~~~~~~~~p-~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~----~~p~----~~~~~~l~~~~~~~g~~ 489 (597)
+|.+.+++..+...-.+ + ...+..+...+...|++++|.+.+++.. ..++ ..++..+...+...|++
T Consensus 84 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~ 163 (203)
T 3gw4_A 84 AARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKNL 163 (203)
T ss_dssp HHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcCH
Confidence 99988888765422122 2 3457778888899999999988887653 1122 22467788889999999
Q ss_pred HHHHHHHHHHHhcC
Q 007573 490 ELGELAAKKMRELD 503 (597)
Q Consensus 490 ~~a~~~~~~~~~~~ 503 (597)
++|...+++++++.
T Consensus 164 ~~A~~~~~~al~~~ 177 (203)
T 3gw4_A 164 LEAQQHWLRARDIF 177 (203)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999988753
No 157
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=98.47 E-value=1.6e-06 Score=73.62 Aligned_cols=95 Identities=13% Similarity=-0.001 Sum_probs=52.0
Q ss_pred hHHHHHHHHHHhhcCCHHHHHHHHhhCC-CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHH
Q 007573 441 SEHYTCLVDILSRAGQLEKAWQITQGMP-FEA-DTGVWGSLLAACVINLNVELGELAAKKMRELDPQNSAVYVMLSNLYA 518 (597)
Q Consensus 441 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 518 (597)
...+..+...+.+.|++++|.+.|++.. ..| +...|..+..++...|++++|+..++++++++|+++.++..++.+|.
T Consensus 11 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~ 90 (164)
T 3sz7_A 11 SDKLKSEGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRLGLARF 90 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 3344455555555555555555555543 222 34455555555555555555555555555555555555555555555
Q ss_pred hcCCcHHHHHHHHHHHh
Q 007573 519 AAGMWRDVTRVRLLMKE 535 (597)
Q Consensus 519 ~~g~~~~A~~~~~~~~~ 535 (597)
..|++++|.+.+++..+
T Consensus 91 ~~g~~~~A~~~~~~al~ 107 (164)
T 3sz7_A 91 DMADYKGAKEAYEKGIE 107 (164)
T ss_dssp HTTCHHHHHHHHHHHHH
T ss_pred HccCHHHHHHHHHHHHH
Confidence 55555555555555544
No 158
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=98.46 E-value=9.2e-07 Score=71.55 Aligned_cols=92 Identities=12% Similarity=0.025 Sum_probs=64.8
Q ss_pred HHHHHHhhcCCHHHHHHHHhhCC-CCCC-H---HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC---CchHHHHHHHH
Q 007573 446 CLVDILSRAGQLEKAWQITQGMP-FEAD-T---GVWGSLLAACVINLNVELGELAAKKMRELDPQN---SAVYVMLSNLY 517 (597)
Q Consensus 446 ~l~~~~~~~g~~~~A~~~~~~~~-~~p~-~---~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~---~~~~~~l~~~~ 517 (597)
.+...+...|++++|.+.++++. ..|+ . ..+..++.++...|++++|+..++++++..|++ +.++..++.+|
T Consensus 7 ~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la~~~ 86 (129)
T 2xev_A 7 NVAFDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLGLSQ 86 (129)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHH
Confidence 34555666677777777666654 2232 2 366667777778888888888888888888877 56677788888
Q ss_pred HhcCCcHHHHHHHHHHHhCC
Q 007573 518 AAAGMWRDVTRVRLLMKEQG 537 (597)
Q Consensus 518 ~~~g~~~~A~~~~~~~~~~~ 537 (597)
...|++++|.+.++.+.+..
T Consensus 87 ~~~g~~~~A~~~~~~~~~~~ 106 (129)
T 2xev_A 87 YGEGKNTEAQQTLQQVATQY 106 (129)
T ss_dssp HHTTCHHHHHHHHHHHHHHS
T ss_pred HHcCCHHHHHHHHHHHHHHC
Confidence 88888888888888776643
No 159
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.46 E-value=3.1e-06 Score=70.20 Aligned_cols=109 Identities=10% Similarity=-0.010 Sum_probs=63.1
Q ss_pred HHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCC----hHHHHHHHHHHhhcCCHHHHHHHHhhCC-CCC-CHHHHHHH
Q 007573 406 ITFLSLLSACGHAGKVNESMDLFELMVKVYGIIPS----SEHYTCLVDILSRAGQLEKAWQITQGMP-FEA-DTGVWGSL 479 (597)
Q Consensus 406 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~l 479 (597)
..+..+...+...|++++|.+.|+...+ ..|+ ...+..+...|...|++++|.+.+++.. ..| +...+..+
T Consensus 29 ~~~~~~a~~~~~~~~~~~A~~~~~~a~~---~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ 105 (148)
T 2dba_A 29 EQLRKEGNELFKCGDYGGALAAYTQALG---LDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALYRR 105 (148)
T ss_dssp HHHHHHHHHHHTTTCHHHHHHHHHHHHT---SCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHH---HcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHHHHH
Confidence 3444444455555555555555555442 2333 3445555555666666666666655543 223 45566667
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHH
Q 007573 480 LAACVINLNVELGELAAKKMRELDPQNSAVYVMLSNLY 517 (597)
Q Consensus 480 ~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 517 (597)
..++...|++++|...++++++++|+++.++..+..+.
T Consensus 106 a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 143 (148)
T 2dba_A 106 SQALEKLGRLDQAVLDLQRCVSLEPKNKVFQEALRNIS 143 (148)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHH
Confidence 77777777777777777777777777766555555443
No 160
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.45 E-value=1.6e-06 Score=71.92 Aligned_cols=97 Identities=14% Similarity=-0.014 Sum_probs=88.6
Q ss_pred ChHHHHHHHHHHhhcCCHHHHHHHHhhCC-CCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHH
Q 007573 440 SSEHYTCLVDILSRAGQLEKAWQITQGMP-FEAD----TGVWGSLLAACVINLNVELGELAAKKMRELDPQNSAVYVMLS 514 (597)
Q Consensus 440 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~ 514 (597)
+...+..+...+...|++++|.+.+++.. ..|+ ...|..+...+...|++++|+..++++++.+|+++..+..++
T Consensus 27 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a 106 (148)
T 2dba_A 27 SVEQLRKEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALYRRS 106 (148)
T ss_dssp CHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHHHHHH
Confidence 46778889999999999999999998865 5676 568888999999999999999999999999999999999999
Q ss_pred HHHHhcCCcHHHHHHHHHHHhC
Q 007573 515 NLYAAAGMWRDVTRVRLLMKEQ 536 (597)
Q Consensus 515 ~~~~~~g~~~~A~~~~~~~~~~ 536 (597)
.+|...|++++|.+.+++..+.
T Consensus 107 ~~~~~~~~~~~A~~~~~~al~~ 128 (148)
T 2dba_A 107 QALEKLGRLDQAVLDLQRCVSL 128 (148)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHc
Confidence 9999999999999999998764
No 161
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=98.44 E-value=4.5e-06 Score=70.77 Aligned_cols=128 Identities=13% Similarity=0.015 Sum_probs=94.8
Q ss_pred hhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChHHHHHHHHH
Q 007573 371 VSWNTIIAAFAQHGHYEKALIFFSQMGLNGFDPDGITFLSLLSACGHAGKVNESMDLFELMVKVYGIIPSSEHYTCLVDI 450 (597)
Q Consensus 371 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~ 450 (597)
..|..+...+...|++++|...|++..+.. +.+..++..+..++...|++++|...++...+. .+.+...+..+..+
T Consensus 14 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~a~~ 90 (166)
T 1a17_A 14 EELKTQANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIEL--DKKYIKGYYRRAAS 90 (166)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CcccHHHHHHHHHH
Confidence 356667777888888888888888887653 335677777888888888889988888888764 23346778888888
Q ss_pred HhhcCCHHHHHHHHhhCC-CCC-CHHHHHHH--HHHHHhcCCHHHHHHHHHHHHh
Q 007573 451 LSRAGQLEKAWQITQGMP-FEA-DTGVWGSL--LAACVINLNVELGELAAKKMRE 501 (597)
Q Consensus 451 ~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~l--~~~~~~~g~~~~a~~~~~~~~~ 501 (597)
+...|++++|.+.+++.. ..| +...+..+ +..+...|++++|+..+.+..+
T Consensus 91 ~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~ 145 (166)
T 1a17_A 91 NMALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRS 145 (166)
T ss_dssp HHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHcccchHH
Confidence 888999999988888765 333 44455333 3346778889999988887754
No 162
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=98.42 E-value=1e-06 Score=72.62 Aligned_cols=63 Identities=10% Similarity=-0.071 Sum_probs=57.3
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhc-------CCCCCchH----HHHHHHHHhcCCcHHHHHHHHHHHhC
Q 007573 474 GVWGSLLAACVINLNVELGELAAKKMREL-------DPQNSAVY----VMLSNLYAAAGMWRDVTRVRLLMKEQ 536 (597)
Q Consensus 474 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-------~p~~~~~~----~~l~~~~~~~g~~~~A~~~~~~~~~~ 536 (597)
..|..+..++...|++++|+..+++++++ +|++...| ...+.++...|++++|++.|++..+.
T Consensus 58 ~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel 131 (159)
T 2hr2_A 58 FCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEM 131 (159)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 38888889999999999999999999999 99998889 99999999999999999999998763
No 163
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=98.40 E-value=2.1e-06 Score=69.41 Aligned_cols=94 Identities=11% Similarity=0.006 Sum_probs=61.9
Q ss_pred HHHHHHHHHHhhcCCHHHHHHHHhhCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC-------CchHHH
Q 007573 442 EHYTCLVDILSRAGQLEKAWQITQGMP--FEADTGVWGSLLAACVINLNVELGELAAKKMRELDPQN-------SAVYVM 512 (597)
Q Consensus 442 ~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~-------~~~~~~ 512 (597)
..+..++..+...|++++|...+++.. .+.+...+..++..+...|++++|+..++++++..|.+ +.++..
T Consensus 5 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (131)
T 1elr_A 5 LKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYAR 84 (131)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHHH
Confidence 345555666666666666666666543 23345566666667777777777777777777766654 556677
Q ss_pred HHHHHHhcCCcHHHHHHHHHHHh
Q 007573 513 LSNLYAAAGMWRDVTRVRLLMKE 535 (597)
Q Consensus 513 l~~~~~~~g~~~~A~~~~~~~~~ 535 (597)
++.+|...|++++|.+.++++.+
T Consensus 85 la~~~~~~~~~~~A~~~~~~~~~ 107 (131)
T 1elr_A 85 IGNSYFKEEKYKDAIHFYNKSLA 107 (131)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHhccHHHHHHHHHHHHH
Confidence 77777777777777777777665
No 164
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=98.39 E-value=2.4e-06 Score=69.88 Aligned_cols=101 Identities=10% Similarity=-0.078 Sum_probs=75.8
Q ss_pred CChHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHhhCC-CCC-CHHHHHHHH
Q 007573 403 PDGITFLSLLSACGHAGKVNESMDLFELMVKVYGIIPSSEHYTCLVDILSRAGQLEKAWQITQGMP-FEA-DTGVWGSLL 480 (597)
Q Consensus 403 p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~l~ 480 (597)
.+...+..+...+...|++++|...|+...+. .+.+...+..+...|...|++++|...+++.. ..| +...|..+.
T Consensus 7 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~ 84 (137)
T 3q49_B 7 PSAQELKEQGNRLFVGRKYPEAAACYGRAITR--NPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLG 84 (137)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhh--CcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHHH
Confidence 34566666777777777777777777777653 12346677777777888888888888777665 333 567888888
Q ss_pred HHHHhcCCHHHHHHHHHHHHhcCCC
Q 007573 481 AACVINLNVELGELAAKKMRELDPQ 505 (597)
Q Consensus 481 ~~~~~~g~~~~a~~~~~~~~~~~p~ 505 (597)
.++...|++++|+..++++++++|+
T Consensus 85 ~~~~~~~~~~~A~~~~~~a~~~~p~ 109 (137)
T 3q49_B 85 QCQLEMESYDEAIANLQRAYSLAKE 109 (137)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhHHHHHHHHHHHHHHChh
Confidence 8899999999999999999998887
No 165
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=98.39 E-value=2.9e-06 Score=85.47 Aligned_cols=144 Identities=15% Similarity=0.042 Sum_probs=99.9
Q ss_pred hhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChHHHHHHHH
Q 007573 370 LVSWNTIIAAFAQHGHYEKALIFFSQMGLNGFDPDGITFLSLLSACGHAGKVNESMDLFELMVKVYGIIPSSEHYTCLVD 449 (597)
Q Consensus 370 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~ 449 (597)
...|..+...+.+.|++++|+..|++..+. .|+...+ . -+...+ ... .....|..+..
T Consensus 268 a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~--~p~~~~~----------~-~~~~~~----~~~-----~~~~~~~nla~ 325 (457)
T 1kt0_A 268 AAIVKEKGTVYFKGGKYMQAVIQYGKIVSW--LEMEYGL----------S-EKESKA----SES-----FLLAAFLNLAM 325 (457)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--HTTCCSC----------C-HHHHHH----HHH-----HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHH--hcccccC----------C-hHHHHH----HHH-----HHHHHHHHHHH
Confidence 446666677777777777777777776653 1211000 0 000000 000 01456778888
Q ss_pred HHhhcCCHHHHHHHHhhCC-CC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCcHHHH
Q 007573 450 ILSRAGQLEKAWQITQGMP-FE-ADTGVWGSLLAACVINLNVELGELAAKKMRELDPQNSAVYVMLSNLYAAAGMWRDVT 527 (597)
Q Consensus 450 ~~~~~g~~~~A~~~~~~~~-~~-p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~ 527 (597)
+|.+.|++++|+..+++.. .. .+...|..+..+|...|++++|+..|+++++++|++..++..++.++...|+++++.
T Consensus 326 ~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a~ 405 (457)
T 1kt0_A 326 CYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQISMCQKKAKEHNERD 405 (457)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC----CHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 8999999999999988865 33 467789999999999999999999999999999999999999999999999999876
Q ss_pred H-HHHHHHh
Q 007573 528 R-VRLLMKE 535 (597)
Q Consensus 528 ~-~~~~~~~ 535 (597)
+ .++.|..
T Consensus 406 ~~~~~~~f~ 414 (457)
T 1kt0_A 406 RRIYANMFK 414 (457)
T ss_dssp HHHHHHC--
T ss_pred HHHHHHHHh
Confidence 4 4666554
No 166
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=98.38 E-value=2.5e-05 Score=73.97 Aligned_cols=227 Identities=13% Similarity=0.048 Sum_probs=112.5
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHhHHCCCCCCHHH-HHHHHHHHhccc-hhHHHHHHHHHHHHhCCCCcccHHHHHHHHH
Q 007573 272 FNAMIAGYAQNGVAEEALRLFSGMIKMDMQPDDAT-LVSVFTACSALQ-LLNEGRQSHVLVIRNGFEANVSVCNAVITMY 349 (597)
Q Consensus 272 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~-~~~ll~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 349 (597)
++.+-....+.+..++|++++.+++.. .|+..| |+.--..+...+ .++++...++.++...
T Consensus 57 ~~~~r~~~~~~e~se~AL~lt~~~L~~--nP~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~n--------------- 119 (349)
T 3q7a_A 57 MDYFRAIAAKEEKSERALELTEIIVRM--NPAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQN--------------- 119 (349)
T ss_dssp HHHHHHHHHTTCCSHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTT---------------
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHh--CchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhC---------------
Confidence 333333344445556777777777764 444333 332222333333 3455555555544433
Q ss_pred HhcCCHHHHHHHHhccCCCChhhHHHHHHHHHHc-C-CHHHHHHHHHHHHHCCCCCChHHHHHHHHHHhccCcHH-----
Q 007573 350 SRCGGILDSELAFRQIHSPNLVSWNTIIAAFAQH-G-HYEKALIFFSQMGLNGFDPDGITFLSLLSACGHAGKVN----- 422 (597)
Q Consensus 350 ~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~-g-~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~----- 422 (597)
+.+..+|+.-...+... + ++++++++++++.+.. +-|..+|+.-...+.+.|..+
T Consensus 120 -----------------PKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~L~~d-pkNy~AW~~R~wvl~~l~~~~~~~~~ 181 (349)
T 3q7a_A 120 -----------------LKSYQVWHHRLLLLDRISPQDPVSEIEYIHGSLLPD-PKNYHTWAYLHWLYSHFSTLGRISEA 181 (349)
T ss_dssp -----------------CCCHHHHHHHHHHHHHHCCSCCHHHHHHHHHHTSSC-TTCHHHHHHHHHHHHHHHHTTCCCHH
T ss_pred -----------------CCcHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccccccchh
Confidence 33444444444444443 4 4555555555555432 223334433333333333333
Q ss_pred ---HHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCC-------HHHHHHHHhhCC-CCC-CHHHHHHHHHHHHhcCCH-
Q 007573 423 ---ESMDLFELMVKVYGIIPSSEHYTCLVDILSRAGQ-------LEKAWQITQGMP-FEA-DTGVWGSLLAACVINLNV- 489 (597)
Q Consensus 423 ---~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~-------~~~A~~~~~~~~-~~p-~~~~~~~l~~~~~~~g~~- 489 (597)
++++.++++.+. -+-+...|+....++.+.++ ++++++.++++. ..| |...|+-+-..+.+.|+.
T Consensus 182 ~~~eELe~~~k~I~~--dp~N~SAW~~R~~lL~~l~~~~~~~~~~~eELe~~~~aI~~~P~n~SaW~Ylr~Ll~~~~~~~ 259 (349)
T 3q7a_A 182 QWGSELDWCNEMLRV--DGRNNSAWGWRWYLRVSRPGAETSSRSLQDELIYILKSIHLIPHNVSAWNYLRGFLKHFSLPL 259 (349)
T ss_dssp HHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHTTSTTCCCCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCS
T ss_pred hHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCCc
Confidence 555566655543 12234555555555555554 455666655543 233 455665555555544432
Q ss_pred -------------------HHHHHHHHHHHhcC------CCCCchHHHHHHHHHhcCCcHHHHHHHHHHHh
Q 007573 490 -------------------ELGELAAKKMRELD------PQNSAVYVMLSNLYAAAGMWRDVTRVRLLMKE 535 (597)
Q Consensus 490 -------------------~~a~~~~~~~~~~~------p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 535 (597)
.........+.... +..+.++..++++|...|+.++|.++++.+.+
T Consensus 260 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~~~~~~~a~~~~~~l~~ 330 (349)
T 3q7a_A 260 VPILPAILPYTASKLNPDIETVEAFGFPMPSDPLPEDTPLPVPLALEYLADSFIEQNRVDDAAKVFEKLSS 330 (349)
T ss_dssp GGGHHHHGGGTC--------------CCCCC-CCCSSCCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred ccccccccccccccccccchhHHHHHHHHHhcccccccCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Confidence 22222222222222 34566778889999999999999999988754
No 167
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=98.37 E-value=2.2e-06 Score=86.76 Aligned_cols=114 Identities=12% Similarity=-0.000 Sum_probs=50.6
Q ss_pred HHcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHH
Q 007573 381 AQHGHYEKALIFFSQMGLNGFDPDGITFLSLLSACGHAGKVNESMDLFELMVKVYGIIPSSEHYTCLVDILSRAGQLEKA 460 (597)
Q Consensus 381 ~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A 460 (597)
.+.|++++|++.+++..+.. +.+..++..+..++.+.|++++|.+.++++.+. -+.+...+..+..+|.+.|++++|
T Consensus 17 ~~~g~~~~A~~~~~~Al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l--~p~~~~~~~~lg~~~~~~g~~~eA 93 (477)
T 1wao_1 17 FKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIEL--DKKYIKGYYRRAASNMALGKFRAA 93 (477)
T ss_dssp TTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHS--CTTCHHHHHHHHHHHHHHTCHHHH
T ss_pred HHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHH
Confidence 34455555555555554431 122444555555555555555555555555432 112244455555555555555555
Q ss_pred HHHHhhCC-CCC-CHHHHHHHHHH--HHhcCCHHHHHHHHH
Q 007573 461 WQITQGMP-FEA-DTGVWGSLLAA--CVINLNVELGELAAK 497 (597)
Q Consensus 461 ~~~~~~~~-~~p-~~~~~~~l~~~--~~~~g~~~~a~~~~~ 497 (597)
.+.+++.. ..| +...+..+..+ +...|++++|++.++
T Consensus 94 ~~~~~~al~~~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 94 LRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHHHHHHHHHSTTCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 55555433 222 22233333333 445555555555555
No 168
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=98.36 E-value=8.7e-07 Score=89.68 Aligned_cols=119 Identities=5% Similarity=-0.062 Sum_probs=99.8
Q ss_pred HHHHhccCcHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHhhCC-CCC-CHHHHHHHHHHHHhcCCH
Q 007573 412 LSACGHAGKVNESMDLFELMVKVYGIIPSSEHYTCLVDILSRAGQLEKAWQITQGMP-FEA-DTGVWGSLLAACVINLNV 489 (597)
Q Consensus 412 l~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~l~~~~~~~g~~ 489 (597)
...+.+.|++++|.+.++++.+. -+.+...|..+..+|.+.|++++|++.+++.. ..| +...|..+..++...|++
T Consensus 13 g~~~~~~g~~~~A~~~~~~Al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~~ 90 (477)
T 1wao_1 13 ANDYFKAKDYENAIKFYSQAIEL--NPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGKF 90 (477)
T ss_dssp SSSTTTTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHTCH
T ss_pred HHHHHHhCCHHHHHHHHHHHHHh--CCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCH
Confidence 34567889999999999999875 22348899999999999999999999998875 455 567899999999999999
Q ss_pred HHHHHHHHHHHhcCCCCCchHHHHHHH--HHhcCCcHHHHHHHHH
Q 007573 490 ELGELAAKKMRELDPQNSAVYVMLSNL--YAAAGMWRDVTRVRLL 532 (597)
Q Consensus 490 ~~a~~~~~~~~~~~p~~~~~~~~l~~~--~~~~g~~~~A~~~~~~ 532 (597)
++|+..++++++++|+++..+..++.+ +.+.|++++|++.+++
T Consensus 91 ~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~~ 135 (477)
T 1wao_1 91 RAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEH 135 (477)
T ss_dssp HHHHHHHHHHHHHSTTCTTHHHHHHHHHHHHHHHHHCCC------
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhccccc
Confidence 999999999999999999999988888 8999999999999884
No 169
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=98.34 E-value=4.3e-06 Score=73.56 Aligned_cols=95 Identities=11% Similarity=-0.049 Sum_probs=77.9
Q ss_pred HHHHHHHHHHhhcCCHHHHHHHHhhCC-CCC-C----------------HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 007573 442 EHYTCLVDILSRAGQLEKAWQITQGMP-FEA-D----------------TGVWGSLLAACVINLNVELGELAAKKMRELD 503 (597)
Q Consensus 442 ~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p-~----------------~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 503 (597)
..+..+...+.+.|++++|.+.|++.. ..| + ...|..+..++...|++++|+..++++++.+
T Consensus 39 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~ 118 (198)
T 2fbn_A 39 FDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKID 118 (198)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC
Confidence 345556666667777777777766543 112 2 2678888999999999999999999999999
Q ss_pred CCCCchHHHHHHHHHhcCCcHHHHHHHHHHHhC
Q 007573 504 PQNSAVYVMLSNLYAAAGMWRDVTRVRLLMKEQ 536 (597)
Q Consensus 504 p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 536 (597)
|+++.++..++.+|...|++++|.+.+++..+.
T Consensus 119 p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~ 151 (198)
T 2fbn_A 119 KNNVKALYKLGVANMYFGFLEEAKENLYKAASL 151 (198)
T ss_dssp TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHcccHHHHHHHHHHHHHH
Confidence 999999999999999999999999999998764
No 170
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=98.34 E-value=0.00022 Score=67.43 Aligned_cols=229 Identities=11% Similarity=0.011 Sum_probs=147.1
Q ss_pred HHHHhcCCHHHHHHHHhhcCC---CChhHHHHHHHHHHHcC-ChhHHHHHHHHhHHCCCCCC-HHHHHHHHHHHhcc-ch
Q 007573 246 TGFCKVGMLENARLLFERIQP---KDCVSFNAMIAGYAQNG-VAEEALRLFSGMIKMDMQPD-DATLVSVFTACSAL-QL 319 (597)
Q Consensus 246 ~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g-~~~~A~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~-~~ 319 (597)
....+.+..++|+++++.+.. .+..+|+.--..+...| .+++++.+++.++... |. ...|+.--..+... +
T Consensus 62 ~~~~~~e~se~AL~lt~~~L~~nP~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~n--PKny~aW~hR~wlL~~l~~- 138 (349)
T 3q7a_A 62 AIAAKEEKSERALELTEIIVRMNPAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQN--LKSYQVWHHRLLLLDRISP- 138 (349)
T ss_dssp HHHHTTCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTT--CCCHHHHHHHHHHHHHHCC-
T ss_pred HHHHhCCCCHHHHHHHHHHHHhCchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHHhcC-
Confidence 334455566789999988753 56678998888888888 5999999999999853 43 33333222222111 1
Q ss_pred hHHHHHHHHHHHHhCCCCcccHHHHHHHHHHhcCCHHHHHHHHhccC---CCChhhHHHHHHHHHHcCCHH--------H
Q 007573 320 LNEGRQSHVLVIRNGFEANVSVCNAVITMYSRCGGILDSELAFRQIH---SPNLVSWNTIIAAFAQHGHYE--------K 388 (597)
Q Consensus 320 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~--------~ 388 (597)
.++++++.+++.+. +.|..+|+--.-.+.+.|.++ +
T Consensus 139 ---------------------------------~~~~~EL~~~~k~L~~dpkNy~AW~~R~wvl~~l~~~~~~~~~~~~e 185 (349)
T 3q7a_A 139 ---------------------------------QDPVSEIEYIHGSLLPDPKNYHTWAYLHWLYSHFSTLGRISEAQWGS 185 (349)
T ss_dssp ---------------------------------SCCHHHHHHHHHHTSSCTTCHHHHHHHHHHHHHHHHTTCCCHHHHHH
T ss_pred ---------------------------------CChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccccccchhhHHH
Confidence 03345555555554 345556665544444444444 8
Q ss_pred HHHHHHHHHHCCCCCChHHHHHHHHHHhccCc-------HHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCH----
Q 007573 389 ALIFFSQMGLNGFDPDGITFLSLLSACGHAGK-------VNESMDLFELMVKVYGIIPSSEHYTCLVDILSRAGQL---- 457 (597)
Q Consensus 389 A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~-------~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~---- 457 (597)
+++.++++.+.. .-|...|+.....+.+.+. ++++++.+++++.. .+-|...|+.+-..+.+.|+.
T Consensus 186 ELe~~~k~I~~d-p~N~SAW~~R~~lL~~l~~~~~~~~~~~eELe~~~~aI~~--~P~n~SaW~Ylr~Ll~~~~~~~~~~ 262 (349)
T 3q7a_A 186 ELDWCNEMLRVD-GRNNSAWGWRWYLRVSRPGAETSSRSLQDELIYILKSIHL--IPHNVSAWNYLRGFLKHFSLPLVPI 262 (349)
T ss_dssp HHHHHHHHHHHC-TTCHHHHHHHHHHHTTSTTCCCCHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCCSGGG
T ss_pred HHHHHHHHHHhC-CCCHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHhcCCCcccc
Confidence 888888888753 4456677777777777665 67888888887763 233567777777777766653
Q ss_pred ----------------HHHHHHHhhCC-C-------CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH-hcCCCCCchHHH
Q 007573 458 ----------------EKAWQITQGMP-F-------EADTGVWGSLLAACVINLNVELGELAAKKMR-ELDPQNSAVYVM 512 (597)
Q Consensus 458 ----------------~~A~~~~~~~~-~-------~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~-~~~p~~~~~~~~ 512 (597)
.+..++..++. . .+++..+..|+..|...|+.++|.++++.+. +.+|-....+..
T Consensus 263 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~~~~~~~a~~~~~~l~~~~dpir~~yw~~ 342 (349)
T 3q7a_A 263 LPAILPYTASKLNPDIETVEAFGFPMPSDPLPEDTPLPVPLALEYLADSFIEQNRVDDAAKVFEKLSSEYDQMRAGYWEF 342 (349)
T ss_dssp HHHHGGGTC--------------CCCCC-CCCSSCCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCGGGHHHHHH
T ss_pred cccccccccccccccchhHHHHHHHHHhcccccccCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhChHHHHHHHH
Confidence 34444544444 1 2567788889999999999999999999987 567765444443
Q ss_pred H
Q 007573 513 L 513 (597)
Q Consensus 513 l 513 (597)
.
T Consensus 343 ~ 343 (349)
T 3q7a_A 343 R 343 (349)
T ss_dssp H
T ss_pred H
Confidence 3
No 171
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=98.29 E-value=0.0002 Score=67.43 Aligned_cols=189 Identities=11% Similarity=0.007 Sum_probs=91.0
Q ss_pred hHHHHHHHHHHHHhCCCCcccHHHHHHHHHHhcC--CHHHHHHHHhccC---CCChhhHHHHHHHHHHcCC-HHHHHHHH
Q 007573 320 LNEGRQSHVLVIRNGFEANVSVCNAVITMYSRCG--GILDSELAFRQIH---SPNLVSWNTIIAAFAQHGH-YEKALIFF 393 (597)
Q Consensus 320 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~-~~~A~~~~ 393 (597)
++++..++..++... +-+..+|+.-...+.+.| .++++..+++.+. +.|..+|+.-.-.+...|. ++++++.+
T Consensus 90 l~~EL~~~~~~L~~~-PKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~dprNy~AW~~R~~vl~~l~~~~~eel~~~ 168 (331)
T 3dss_A 90 VKAELGFLESCLRVN-PKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFT 168 (331)
T ss_dssp HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhC-CCCHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCHHHHHHHH
Confidence 445555555555544 334455555555555555 3566666666554 4555566665555555665 46666666
Q ss_pred HHHHHCCCCCChHHHHHHHHHHhcc--------------CcHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhc-----
Q 007573 394 SQMGLNGFDPDGITFLSLLSACGHA--------------GKVNESMDLFELMVKVYGIIPSSEHYTCLVDILSRA----- 454 (597)
Q Consensus 394 ~~m~~~g~~p~~~~~~~ll~~~~~~--------------g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~----- 454 (597)
.++.+.. +-|...|+.....+.+. +.++++++.+...... .+-|...|+.+-..+.+.
T Consensus 169 ~~~I~~~-p~N~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~--~P~d~SaW~Y~r~ll~~~~~~~~ 245 (331)
T 3dss_A 169 DSLITRN-FSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFT--DPNDQSAWFYHRWLLGAGSGRCE 245 (331)
T ss_dssp HHHHHHC-SCCHHHHHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHSSSCGGG
T ss_pred HHHHHHC-CCCHHHHHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHhccCccc
Confidence 6666543 23344444433333322 3355566666555542 122344444443333333
Q ss_pred ------CCHHHHHHHHhhCC-CCCCHHHHHHHHHH-----HHhcCCHHHHHHHHHHHHhcCCCCCchHHHH
Q 007573 455 ------GQLEKAWQITQGMP-FEADTGVWGSLLAA-----CVINLNVELGELAAKKMRELDPQNSAVYVML 513 (597)
Q Consensus 455 ------g~~~~A~~~~~~~~-~~p~~~~~~~l~~~-----~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l 513 (597)
+.++++++.++++. ..||. .|..+..+ ....|..++....+.++.+++|....-|..+
T Consensus 246 ~~~~~~~~l~~el~~~~elle~~pd~-~w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Dp~r~~~y~d~ 315 (331)
T 3dss_A 246 LSVEKSTVLQSELESCKELQELEPEN-KWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDL 315 (331)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHCTTC-HHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHHHCGGGHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHHHhhCccc-chHHHHHHHHHHhhcccccHHHHHHHHHHHHHhCcchhhHHHHH
Confidence 23455555555443 33432 22211111 1123445555555555555555544434333
No 172
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.29 E-value=4.7e-06 Score=77.91 Aligned_cols=113 Identities=8% Similarity=-0.140 Sum_probs=91.7
Q ss_pred ChHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHhhCC-CCC-CHHHHHHHHH
Q 007573 404 DGITFLSLLSACGHAGKVNESMDLFELMVKVYGIIPSSEHYTCLVDILSRAGQLEKAWQITQGMP-FEA-DTGVWGSLLA 481 (597)
Q Consensus 404 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~l~~ 481 (597)
+...+..+...+...|++++|...|+.+.+. .+.+...|..+...|.+.|++++|.+.+++.. ..| +...+..++.
T Consensus 3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~ 80 (281)
T 2c2l_A 3 SAQELKEQGNRLFVGRKYPEAAACYGRAITR--NPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQ 80 (281)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 4567788888899999999999999998864 22357888899999999999999999998865 455 5668888999
Q ss_pred HHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHH
Q 007573 482 ACVINLNVELGELAAKKMRELDPQNSAVYVMLSNLYA 518 (597)
Q Consensus 482 ~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 518 (597)
++...|++++|+..++++++++|+++..+...++...
T Consensus 81 ~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~ 117 (281)
T 2c2l_A 81 CQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSAL 117 (281)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTTCCCCSHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhCccchhhHHHHHHHHH
Confidence 9999999999999999999999887555444444433
No 173
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=98.28 E-value=5.3e-07 Score=71.68 Aligned_cols=83 Identities=12% Similarity=0.014 Sum_probs=53.8
Q ss_pred cCCHHHHHHHHhhCC-C---CCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCcHHHHH
Q 007573 454 AGQLEKAWQITQGMP-F---EAD-TGVWGSLLAACVINLNVELGELAAKKMRELDPQNSAVYVMLSNLYAAAGMWRDVTR 528 (597)
Q Consensus 454 ~g~~~~A~~~~~~~~-~---~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 528 (597)
.|++++|+..|++.. . .|+ ...+..++.++...|++++|+..++++++.+|+++.++..++.+|...|++++|.+
T Consensus 3 ~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 82 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGVE 82 (117)
T ss_dssp ----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHHH
Confidence 455556666665543 2 132 34566677777777777777777777777777777777777777777777777777
Q ss_pred HHHHHHhC
Q 007573 529 VRLLMKEQ 536 (597)
Q Consensus 529 ~~~~~~~~ 536 (597)
.+++..+.
T Consensus 83 ~~~~al~~ 90 (117)
T 3k9i_A 83 LLLKIIAE 90 (117)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHh
Confidence 77776653
No 174
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=98.26 E-value=5e-06 Score=64.92 Aligned_cols=100 Identities=17% Similarity=0.089 Sum_probs=68.8
Q ss_pred HHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHhhCC-CCC---CHHHHHHHHH
Q 007573 406 ITFLSLLSACGHAGKVNESMDLFELMVKVYGIIPSSEHYTCLVDILSRAGQLEKAWQITQGMP-FEA---DTGVWGSLLA 481 (597)
Q Consensus 406 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p---~~~~~~~l~~ 481 (597)
..+..+...+...|++++|...++.+.+. .+.+...+..+...+...|++++|.+.+++.. ..| +...+..+..
T Consensus 7 ~~~~~~~~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l~~ 84 (112)
T 2kck_A 7 EEYYLEGVLQYDAGNYTESIDLFEKAIQL--DPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAKAD 84 (112)
T ss_dssp TGGGGHHHHHHSSCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHh--CcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHHHHH
Confidence 34455555666666777777776666553 12345566667777777777777777776654 333 4667788888
Q ss_pred HHHhc-CCHHHHHHHHHHHHhcCCCCC
Q 007573 482 ACVIN-LNVELGELAAKKMRELDPQNS 507 (597)
Q Consensus 482 ~~~~~-g~~~~a~~~~~~~~~~~p~~~ 507 (597)
.+... |++++|++.++++++..|.++
T Consensus 85 ~~~~~~~~~~~A~~~~~~~~~~~p~~~ 111 (112)
T 2kck_A 85 ALRYIEGKEVEAEIAEARAKLEHHHHH 111 (112)
T ss_dssp HHTTCSSCSHHHHHHHHHHGGGCCCCC
T ss_pred HHHHHhCCHHHHHHHHHHHhhcccCCC
Confidence 88888 888888888888888888754
No 175
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=98.26 E-value=1e-05 Score=65.22 Aligned_cols=108 Identities=6% Similarity=-0.034 Sum_probs=63.7
Q ss_pred HHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHhhCC-C----CCC----HHHHHH
Q 007573 408 FLSLLSACGHAGKVNESMDLFELMVKVYGIIPSSEHYTCLVDILSRAGQLEKAWQITQGMP-F----EAD----TGVWGS 478 (597)
Q Consensus 408 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~----~p~----~~~~~~ 478 (597)
+..+...+...|++++|...++...+. .+.+...+..+...|...|++++|...+++.. . .++ ..++..
T Consensus 7 ~~~l~~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (131)
T 1elr_A 7 EKELGNDAYKKKDFDTALKHYDKAKEL--DPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYAR 84 (131)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHhc--CCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHHH
Confidence 344444445555555555555555442 12234455555555555566666655555443 1 122 556777
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHH
Q 007573 479 LLAACVINLNVELGELAAKKMRELDPQNSAVYVMLSNLYA 518 (597)
Q Consensus 479 l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 518 (597)
++..+...|++++|...++++++..| ++.....+..+..
T Consensus 85 la~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~l~~~~~ 123 (131)
T 1elr_A 85 IGNSYFKEEKYKDAIHFYNKSLAEHR-TPDVLKKCQQAEK 123 (131)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCC-CHHHHHHHHHHHH
T ss_pred HHHHHHHhccHHHHHHHHHHHHHhCC-CHHHHHHHHHHHH
Confidence 78888888888888888888888887 4555555555443
No 176
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=98.25 E-value=4.6e-06 Score=66.59 Aligned_cols=98 Identities=12% Similarity=-0.000 Sum_probs=66.2
Q ss_pred HHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHhhCC-CCC-CHHHHHHHHHHHHh
Q 007573 408 FLSLLSACGHAGKVNESMDLFELMVKVYGIIPSSEHYTCLVDILSRAGQLEKAWQITQGMP-FEA-DTGVWGSLLAACVI 485 (597)
Q Consensus 408 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~l~~~~~~ 485 (597)
+..+...+.+.|++++|...|+.+.+. -+.+...+..+..++.+.|++++|+..+++.. ..| +...+..+..++..
T Consensus 20 ~~~~g~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~ 97 (121)
T 1hxi_A 20 PMEEGLSMLKLANLAEAALAFEAVCQK--EPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTN 97 (121)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 334455666677777777777777653 12246667777777777788888777777654 344 56678888888888
Q ss_pred cCCHHHHHHHHHHHHhcCCCCC
Q 007573 486 NLNVELGELAAKKMRELDPQNS 507 (597)
Q Consensus 486 ~g~~~~a~~~~~~~~~~~p~~~ 507 (597)
.|++++|+..++++++.+|++.
T Consensus 98 ~g~~~~A~~~~~~al~~~P~~~ 119 (121)
T 1hxi_A 98 EHNANAALASLRAWLLSQPQYE 119 (121)
T ss_dssp HHHHHHHHHHHHHHHC------
T ss_pred cCCHHHHHHHHHHHHHhCcCCC
Confidence 8889999999999888888754
No 177
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=98.24 E-value=7.3e-06 Score=68.92 Aligned_cols=93 Identities=17% Similarity=0.044 Sum_probs=63.5
Q ss_pred HHHHHHHHHhhcCCHHHHHHHHhhCC----CCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC------CCc
Q 007573 443 HYTCLVDILSRAGQLEKAWQITQGMP----FEAD----TGVWGSLLAACVINLNVELGELAAKKMRELDPQ------NSA 508 (597)
Q Consensus 443 ~~~~l~~~~~~~g~~~~A~~~~~~~~----~~p~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~------~~~ 508 (597)
.+..+...+...|++++|.+.+++.. ..++ ...+..+...+...|++++|...++++++..+. ...
T Consensus 51 ~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~ 130 (164)
T 3ro3_A 51 AYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGR 130 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHH
Confidence 44455555666666666666555432 0111 335667777788888888888888888765321 145
Q ss_pred hHHHHHHHHHhcCCcHHHHHHHHHHHh
Q 007573 509 VYVMLSNLYAAAGMWRDVTRVRLLMKE 535 (597)
Q Consensus 509 ~~~~l~~~~~~~g~~~~A~~~~~~~~~ 535 (597)
.+..++.+|...|++++|.+.+++..+
T Consensus 131 ~~~~la~~~~~~g~~~~A~~~~~~a~~ 157 (164)
T 3ro3_A 131 ACWSLGNAYTALGNHDQAMHFAEKHLE 157 (164)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 678889999999999999999888765
No 178
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=98.23 E-value=0.00021 Score=67.29 Aligned_cols=179 Identities=9% Similarity=0.052 Sum_probs=131.7
Q ss_pred HHHHHHHHhccC---CCChhhHHHHHHHHHHcCC--HHHHHHHHHHHHHCCCCCChHHHHHHHHHHhccCc-HHHHHHHH
Q 007573 355 ILDSELAFRQIH---SPNLVSWNTIIAAFAQHGH--YEKALIFFSQMGLNGFDPDGITFLSLLSACGHAGK-VNESMDLF 428 (597)
Q Consensus 355 ~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~--~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~-~~~a~~~~ 428 (597)
++++..+++.+. +.+..+|+.-...+...|+ ++++++++.++.+.. +-|...|+.-...+...|. ++++.+.+
T Consensus 90 l~~EL~~~~~~L~~~PKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~d-prNy~AW~~R~~vl~~l~~~~~eel~~~ 168 (331)
T 3dss_A 90 VKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFT 168 (331)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCcCHHHHHHHH
Confidence 456666666655 6788899988888888884 899999999999864 4466777777777777787 68999999
Q ss_pred HHhHHhcCCCCChHHHHHHHHHHhhc--------------CCHHHHHHHHhhCC-CCC-CHHHHHHHHHHHHhc------
Q 007573 429 ELMVKVYGIIPSSEHYTCLVDILSRA--------------GQLEKAWQITQGMP-FEA-DTGVWGSLLAACVIN------ 486 (597)
Q Consensus 429 ~~~~~~~~~~p~~~~~~~l~~~~~~~--------------g~~~~A~~~~~~~~-~~p-~~~~~~~l~~~~~~~------ 486 (597)
+.+++. -+-+...|+....++.+. +.++++++.+.+.. ..| |...|+-+-..+...
T Consensus 169 ~~~I~~--~p~N~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~P~d~SaW~Y~r~ll~~~~~~~~~ 246 (331)
T 3dss_A 169 DSLITR--NFSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGAGSGRCEL 246 (331)
T ss_dssp HHHHHH--CSCCHHHHHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHSSSCGGGC
T ss_pred HHHHHH--CCCCHHHHHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccCcccc
Confidence 999875 234566777766666555 45788998888765 444 677887666555544
Q ss_pred -----CCHHHHHHHHHHHHhcCCCCCchHHHHHHH---HHhcCCcHHHHHHHHHHHhC
Q 007573 487 -----LNVELGELAAKKMRELDPQNSAVYVMLSNL---YAAAGMWRDVTRVRLLMKEQ 536 (597)
Q Consensus 487 -----g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~---~~~~g~~~~A~~~~~~~~~~ 536 (597)
+.++++++.++++++++|++...+..++.. ....|..++....+.++.+.
T Consensus 247 ~~~~~~~l~~el~~~~elle~~pd~~w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~ 304 (331)
T 3dss_A 247 SVEKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAV 304 (331)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHhhCcccchHHHHHHHHHHhhcccccHHHHHHHHHHHHHh
Confidence 457899999999999999985555444332 22467788888899888764
No 179
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=98.22 E-value=1.7e-05 Score=76.27 Aligned_cols=129 Identities=9% Similarity=-0.040 Sum_probs=103.1
Q ss_pred ChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC----------------hHHHHHHHHHHhccCcHHHHHHHHHHhH
Q 007573 369 NLVSWNTIIAAFAQHGHYEKALIFFSQMGLNGFDPD----------------GITFLSLLSACGHAGKVNESMDLFELMV 432 (597)
Q Consensus 369 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~----------------~~~~~~ll~~~~~~g~~~~a~~~~~~~~ 432 (597)
+...|..+...+.+.|++++|+..|++..+.. |+ ...+..+..++.+.|++++|...++++.
T Consensus 146 ~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~--p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al 223 (336)
T 1p5q_A 146 QSTIVKERGTVYFKEGKYKQALLQYKKIVSWL--EYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKAL 223 (336)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHT--TTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHh--hccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 34567778888888899999999988888753 33 3788888889999999999999999988
Q ss_pred HhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHhhCC-CCC-CHHHHHHHHHHHHhcCCHHHH-HHHHHHHHh
Q 007573 433 KVYGIIPSSEHYTCLVDILSRAGQLEKAWQITQGMP-FEA-DTGVWGSLLAACVINLNVELG-ELAAKKMRE 501 (597)
Q Consensus 433 ~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~l~~~~~~~g~~~~a-~~~~~~~~~ 501 (597)
+. .+.+...+..+..+|...|++++|...|++.. ..| +...+..+..++...|+.++| ...++++++
T Consensus 224 ~~--~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~ 293 (336)
T 1p5q_A 224 EL--DSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQRIRRQLAREKKLYANMFE 293 (336)
T ss_dssp HH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred Hh--CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 64 23357888889999999999999999998875 444 567888888889999999888 456777764
No 180
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=98.22 E-value=1.9e-06 Score=83.00 Aligned_cols=147 Identities=10% Similarity=-0.032 Sum_probs=77.9
Q ss_pred hhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChHHHHHHHHH
Q 007573 371 VSWNTIIAAFAQHGHYEKALIFFSQMGLNGFDPDGITFLSLLSACGHAGKVNESMDLFELMVKVYGIIPSSEHYTCLVDI 450 (597)
Q Consensus 371 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~ 450 (597)
..+..+...+.+.|++++|+..|++.... .|+... +...|+.+++...+. ...|..+..+
T Consensus 180 ~~~~~~g~~~~~~g~~~~A~~~y~~Al~~--~p~~~~-------~~~~~~~~~~~~~l~-----------~~~~~nla~~ 239 (338)
T 2if4_A 180 DRRKMDGNSLFKEEKLEEAMQQYEMAIAY--MGDDFM-------FQLYGKYQDMALAVK-----------NPCHLNIAAC 239 (338)
T ss_dssp HHHHHHHHHTCSSSCCHHHHHHHHHHHHH--SCHHHH-------HTCCHHHHHHHHHHH-----------THHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHH--hccchh-------hhhcccHHHHHHHHH-----------HHHHHHHHHH
Confidence 35566666677778888888888877653 343321 223344444332221 1367778888
Q ss_pred HhhcCCHHHHHHHHhhCC-CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHH-HHhcCCcHHHH
Q 007573 451 LSRAGQLEKAWQITQGMP-FEA-DTGVWGSLLAACVINLNVELGELAAKKMRELDPQNSAVYVMLSNL-YAAAGMWRDVT 527 (597)
Q Consensus 451 ~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~-~~~~g~~~~A~ 527 (597)
|.+.|++++|...+++.. ..| +...|..+..++...|++++|+..|+++++++|+++.++..+..+ ....+..+++.
T Consensus 240 ~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~~~~~~~~a~ 319 (338)
T 2if4_A 240 LIKLKRYDEAIGHCNIVLTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRALAEQEKALYQKQK 319 (338)
T ss_dssp HHTTTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC---------------------------
T ss_pred HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 889999999999888765 344 567888889999999999999999999999999988888888877 44456777788
Q ss_pred HHHHHHHhCC
Q 007573 528 RVRLLMKEQG 537 (597)
Q Consensus 528 ~~~~~~~~~~ 537 (597)
+.|++|.+..
T Consensus 320 ~~~~~~l~~~ 329 (338)
T 2if4_A 320 EMYKGIFKGK 329 (338)
T ss_dssp ----------
T ss_pred HHHHHhhCCC
Confidence 8888876544
No 181
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=98.21 E-value=2.2e-05 Score=63.17 Aligned_cols=104 Identities=12% Similarity=-0.006 Sum_probs=67.5
Q ss_pred HHHHHhccCcHHHHHHHHHHhHHhcCCCCC-hHHHHHHHHHHhhcCCHHHHHHHHhhCC-CCCC----HHHHHHHHHHHH
Q 007573 411 LLSACGHAGKVNESMDLFELMVKVYGIIPS-SEHYTCLVDILSRAGQLEKAWQITQGMP-FEAD----TGVWGSLLAACV 484 (597)
Q Consensus 411 ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p~----~~~~~~l~~~~~ 484 (597)
+...+...|++++|...|+.+.+...-.+. ...+..+..++.+.|++++|...+++.. ..|+ ...+..+..++.
T Consensus 8 ~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la~~~~ 87 (129)
T 2xev_A 8 VAFDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLGLSQY 87 (129)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHH
Confidence 344455566666666666666553211111 1355566667777777777777776654 2333 456777888888
Q ss_pred hcCCHHHHHHHHHHHHhcCCCCCchHHHHH
Q 007573 485 INLNVELGELAAKKMRELDPQNSAVYVMLS 514 (597)
Q Consensus 485 ~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~ 514 (597)
..|++++|+..++++++..|+++.......
T Consensus 88 ~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~ 117 (129)
T 2xev_A 88 GEGKNTEAQQTLQQVATQYPGSDAARVAQE 117 (129)
T ss_dssp HTTCHHHHHHHHHHHHHHSTTSHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHHCCCChHHHHHHH
Confidence 899999999999999999888765544333
No 182
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.20 E-value=1.1e-05 Score=80.76 Aligned_cols=164 Identities=8% Similarity=-0.069 Sum_probs=116.1
Q ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHC-CCCCCh----HHHHHHHHHHhccCcHHHHHHHHHHhHHhc---CCCCC-hH
Q 007573 372 SWNTIIAAFAQHGHYEKALIFFSQMGLN-GFDPDG----ITFLSLLSACGHAGKVNESMDLFELMVKVY---GIIPS-SE 442 (597)
Q Consensus 372 ~~~~li~~~~~~g~~~~A~~~~~~m~~~-g~~p~~----~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~---~~~p~-~~ 442 (597)
++..++..|...|++++|.+++.++... +..++. .+.+.+...+...|+.+.+..+++...... +..+. ..
T Consensus 57 al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 136 (434)
T 4b4t_Q 57 SILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHS 136 (434)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHH
Confidence 3566778888888888888888776542 111222 123333344556788899988887765421 22232 56
Q ss_pred HHHHHHHHHhhcCCHHHHHHHHhhCC-------CCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC---CCC----C
Q 007573 443 HYTCLVDILSRAGQLEKAWQITQGMP-------FEAD-TGVWGSLLAACVINLNVELGELAAKKMRELD---PQN----S 507 (597)
Q Consensus 443 ~~~~l~~~~~~~g~~~~A~~~~~~~~-------~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~---p~~----~ 507 (597)
++..++..|...|++++|..++++.. .+|. ..++..++..|...|++++|...+++++... +.+ .
T Consensus 137 ~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 216 (434)
T 4b4t_Q 137 LSIKLATLHYQKKQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVA 216 (434)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHH
T ss_pred HHHHHHHHHHHccChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHH
Confidence 77889999999999999999887653 1222 4478888888999999999999999988753 222 3
Q ss_pred chHHHHHHHHHhcCCcHHHHHHHHHHHh
Q 007573 508 AVYVMLSNLYAAAGMWRDVTRVRLLMKE 535 (597)
Q Consensus 508 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 535 (597)
..+..++..+...|++++|.+.+....+
T Consensus 217 ~~~~~~g~~~~~~~~y~~A~~~~~~a~~ 244 (434)
T 4b4t_Q 217 ELDLMSGILHCEDKDYKTAFSYFFESFE 244 (434)
T ss_dssp HHHHHHHHHTTSSSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 4567778888899999999988877754
No 183
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=98.16 E-value=5.1e-06 Score=70.35 Aligned_cols=76 Identities=13% Similarity=0.073 Sum_probs=63.0
Q ss_pred hHHHHHHHHHHhhcCCHHHHHHHHhhCC-CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCC-chHHHHHHH
Q 007573 441 SEHYTCLVDILSRAGQLEKAWQITQGMP-FEA-DTGVWGSLLAACVINLNVELGELAAKKMRELDPQNS-AVYVMLSNL 516 (597)
Q Consensus 441 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~-~~~~~l~~~ 516 (597)
...|..+..+|.+.|++++|...+++.. ..| +...|..++.++...|++++|+..++++++++|+++ .+...+..+
T Consensus 63 ~~~~~nla~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~l~~~ 141 (162)
T 3rkv_A 63 IPLYANMSQCYLNIGDLHEAEETSSEVLKREETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPAAASVVAREMKIV 141 (162)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Confidence 4678888889999999999999988765 344 577899999999999999999999999999999987 444444443
No 184
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=98.16 E-value=2.4e-05 Score=63.01 Aligned_cols=31 Identities=6% Similarity=-0.201 Sum_probs=21.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 007573 475 VWGSLLAACVINLNVELGELAAKKMRELDPQ 505 (597)
Q Consensus 475 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~ 505 (597)
+|..++.++...|++++|+..|+++++..|+
T Consensus 85 ~~~~lg~~~~~~~~~~~A~~~~~kal~~~~~ 115 (127)
T 4gcn_A 85 AMSRAGNAFQKQNDLSLAVQWFHRSLSEFRD 115 (127)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCcC
Confidence 4555666667777777777777777776664
No 185
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=98.15 E-value=1.8e-06 Score=68.58 Aligned_cols=92 Identities=13% Similarity=0.035 Sum_probs=65.6
Q ss_pred cCcHHHHHHHHHHhHHhcCC-CC-ChHHHHHHHHHHhhcCCHHHHHHHHhhCC-CCC-CHHHHHHHHHHHHhcCCHHHHH
Q 007573 418 AGKVNESMDLFELMVKVYGI-IP-SSEHYTCLVDILSRAGQLEKAWQITQGMP-FEA-DTGVWGSLLAACVINLNVELGE 493 (597)
Q Consensus 418 ~g~~~~a~~~~~~~~~~~~~-~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~l~~~~~~~g~~~~a~ 493 (597)
.|++++|...|++..+. +. .| +...+..+..+|.+.|++++|.+.+++.. ..| +...+..+..++...|++++|+
T Consensus 3 ~g~~~~A~~~~~~al~~-~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~ 81 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIAS-GLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGV 81 (117)
T ss_dssp ----CCCHHHHHHHHSS-CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred CCcHHHHHHHHHHHHHc-CCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHH
Confidence 46667777777776642 10 13 25567777788888888888888887765 334 5668888888899999999999
Q ss_pred HHHHHHHhcCCCCCchH
Q 007573 494 LAAKKMRELDPQNSAVY 510 (597)
Q Consensus 494 ~~~~~~~~~~p~~~~~~ 510 (597)
..++++++..|+++...
T Consensus 82 ~~~~~al~~~p~~~~~~ 98 (117)
T 3k9i_A 82 ELLLKIIAETSDDETIQ 98 (117)
T ss_dssp HHHHHHHHHHCCCHHHH
T ss_pred HHHHHHHHhCCCcHHHH
Confidence 99999999999886543
No 186
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=98.15 E-value=9.1e-06 Score=79.12 Aligned_cols=89 Identities=10% Similarity=-0.005 Sum_probs=78.3
Q ss_pred hHHHHHHHHHHhhcCCHHHHHHHHhhCC-CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHH
Q 007573 441 SEHYTCLVDILSRAGQLEKAWQITQGMP-FEA-DTGVWGSLLAACVINLNVELGELAAKKMRELDPQNSAVYVMLSNLYA 518 (597)
Q Consensus 441 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 518 (597)
...|..+..+|.+.|++++|++.+++.. ..| +...|..+..++...|++++|+..++++++++|++..++..+..++.
T Consensus 273 ~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~~~~~~~~l~~~~~ 352 (370)
T 1ihg_A 273 LSCVLNIGACKLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQ 352 (370)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 5678889999999999999999998865 455 56789999999999999999999999999999999999999999999
Q ss_pred hcCCcHHHHHH
Q 007573 519 AAGMWRDVTRV 529 (597)
Q Consensus 519 ~~g~~~~A~~~ 529 (597)
..++.+++.+.
T Consensus 353 ~~~~~~~a~k~ 363 (370)
T 1ihg_A 353 KIKAQKDKEKA 363 (370)
T ss_dssp HHHHHHHHHHC
T ss_pred HHHHHHHHHHH
Confidence 98888877653
No 187
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=98.14 E-value=8.4e-05 Score=76.53 Aligned_cols=169 Identities=9% Similarity=-0.073 Sum_probs=134.4
Q ss_pred CHHHHHHHHhccC---CCChhhHHHHHHHHHHcCC----------HHHHHHHHHHHHHCCCCCChHHHHHHHHHHhccC-
Q 007573 354 GILDSELAFRQIH---SPNLVSWNTIIAAFAQHGH----------YEKALIFFSQMGLNGFDPDGITFLSLLSACGHAG- 419 (597)
Q Consensus 354 ~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~----------~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g- 419 (597)
..++|.+.++.+. +.+..+|+.--..+...|+ ++++++.++++.+.. +-+..+|..-..++.+.|
T Consensus 44 ~~eeal~~~~~~l~~nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~-pK~y~aW~hR~w~l~~l~~ 122 (567)
T 1dce_A 44 LDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTWHHRCWLLSRLPE 122 (567)
T ss_dssp CSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTCSS
T ss_pred CCHHHHHHHHHHHHHCchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHccc
Confidence 3456677777665 4556678777666666666 899999999998753 345667887777888888
Q ss_pred -cHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcC-CHHHHHHHHhhCC-CCC-CHHHHHHHHHHHHhc---------
Q 007573 420 -KVNESMDLFELMVKVYGIIPSSEHYTCLVDILSRAG-QLEKAWQITQGMP-FEA-DTGVWGSLLAACVIN--------- 486 (597)
Q Consensus 420 -~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~-~~p-~~~~~~~l~~~~~~~--------- 486 (597)
+++++.+.++++.+. -+-+...|+.-..++.+.| ..+++.+.++++. ..| +...|+.....+...
T Consensus 123 ~~~~~el~~~~k~l~~--d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~saW~~r~~ll~~l~~~~~~~~~ 200 (567)
T 1dce_A 123 PNWARELELCARFLEA--DERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGPQ 200 (567)
T ss_dssp CCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCSSSC
T ss_pred ccHHHHHHHHHHHHhh--ccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCCccHHHHHHHHHHhhccccccccc
Confidence 779999999999875 2335778888888888889 8999999998876 445 677888888776653
Q ss_pred -----CCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCcHH
Q 007573 487 -----LNVELGELAAKKMRELDPQNSAVYVMLSNLYAAAGMWRD 525 (597)
Q Consensus 487 -----g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~ 525 (597)
+.++++++.+.++++.+|++..+|..+.+++...++.++
T Consensus 201 ~~~~~~~~~eel~~~~~ai~~~P~~~saW~y~~~ll~~~~~~~~ 244 (567)
T 1dce_A 201 GRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGRAEPHDV 244 (567)
T ss_dssp CSSCHHHHHHHHHHHHHHHHHCSSCSHHHHHHHHHHSCCCCCSC
T ss_pred ccccHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHhcCCCccc
Confidence 567999999999999999999999999999999988655
No 188
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=98.13 E-value=2.3e-05 Score=78.70 Aligned_cols=123 Identities=15% Similarity=0.025 Sum_probs=92.9
Q ss_pred HhccCcHHHHHHHHHHhHHhcC--CC---CC-hHHHHHHHHHHhhcCCHHHHHHHHhhCC---------CCCCH-HHHHH
Q 007573 415 CGHAGKVNESMDLFELMVKVYG--II---PS-SEHYTCLVDILSRAGQLEKAWQITQGMP---------FEADT-GVWGS 478 (597)
Q Consensus 415 ~~~~g~~~~a~~~~~~~~~~~~--~~---p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~---------~~p~~-~~~~~ 478 (597)
+...|++++|..++++..+... +. |+ ..+++.|+.+|...|++++|+.++++.. ..|+. .+++.
T Consensus 319 ~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~n 398 (490)
T 3n71_A 319 ARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMR 398 (490)
T ss_dssp HHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHH
T ss_pred HHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 4466777777777766654321 11 22 4567788888888888888888877653 33443 37889
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHh-----cCCCCCch---HHHHHHHHHhcCCcHHHHHHHHHHHhCC
Q 007573 479 LLAACVINLNVELGELAAKKMRE-----LDPQNSAV---YVMLSNLYAAAGMWRDVTRVRLLMKEQG 537 (597)
Q Consensus 479 l~~~~~~~g~~~~a~~~~~~~~~-----~~p~~~~~---~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 537 (597)
|...|..+|++++|+.+++++++ ++|++|.+ ...+..++..+|++++|..+|.++++..
T Consensus 399 La~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~~~ 465 (490)
T 3n71_A 399 AGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMREAA 465 (490)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999986 47887544 4678888999999999999999998744
No 189
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=98.10 E-value=1.7e-05 Score=60.75 Aligned_cols=66 Identities=18% Similarity=0.083 Sum_probs=60.6
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCcHHHHHHHHHHHhC
Q 007573 471 ADTGVWGSLLAACVINLNVELGELAAKKMRELDPQNSAVYVMLSNLYAAAGMWRDVTRVRLLMKEQ 536 (597)
Q Consensus 471 p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 536 (597)
.+...|..++..+...|++++|+..++++++++|+++.++..++.+|...|++++|++.+++..+.
T Consensus 5 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l 70 (100)
T 3ma5_A 5 EDPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEV 70 (100)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 356788899999999999999999999999999999999999999999999999999999988764
No 190
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=98.08 E-value=6.4e-06 Score=64.32 Aligned_cols=93 Identities=10% Similarity=-0.113 Sum_probs=75.4
Q ss_pred ChHHHHHHHHHHhhcCCHHHHHHHHhhCC-C-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC------CchHH
Q 007573 440 SSEHYTCLVDILSRAGQLEKAWQITQGMP-F-EADTGVWGSLLAACVINLNVELGELAAKKMRELDPQN------SAVYV 511 (597)
Q Consensus 440 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~-~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~------~~~~~ 511 (597)
+...+..+...+.+.|++++|.+.+++.. . +.+...|..+..++...|++++|+..++++++++|++ ...+.
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~ 82 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHVAIRSKLQY 82 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSSTTSHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCccHHHHHHHHHH
Confidence 45567778888888888888888888765 3 3467788899999999999999999999999999998 67778
Q ss_pred HHHHHHHhcCCcHHHHHHHHH
Q 007573 512 MLSNLYAAAGMWRDVTRVRLL 532 (597)
Q Consensus 512 ~l~~~~~~~g~~~~A~~~~~~ 532 (597)
.++.++...|++++|.+.+++
T Consensus 83 ~~~~~~~~~~~~~~a~~~~~~ 103 (111)
T 2l6j_A 83 RLELAQGAVGSVQIPVVEVDE 103 (111)
T ss_dssp HHHHHHHHHHCCCCCSSSSSS
T ss_pred HHHHHHHHHHhHhhhHhHHHH
Confidence 888888888877776655543
No 191
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=98.08 E-value=1.4e-05 Score=67.16 Aligned_cols=133 Identities=17% Similarity=0.079 Sum_probs=85.7
Q ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHCCCC-CC----hHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCC----hH
Q 007573 372 SWNTIIAAFAQHGHYEKALIFFSQMGLNGFD-PD----GITFLSLLSACGHAGKVNESMDLFELMVKVYGIIPS----SE 442 (597)
Q Consensus 372 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~----~~ 442 (597)
++..+...+...|++++|+..+++..+.... ++ ..++..+...+...|++++|...++...+...-.++ ..
T Consensus 11 ~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~ 90 (164)
T 3ro3_A 11 AFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQ 90 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHH
Confidence 4555566666677777777776665542100 11 135666666777777777777777776543211111 34
Q ss_pred HHHHHHHHHhhcCCHHHHHHHHhhCC----CCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC
Q 007573 443 HYTCLVDILSRAGQLEKAWQITQGMP----FEAD----TGVWGSLLAACVINLNVELGELAAKKMRELDP 504 (597)
Q Consensus 443 ~~~~l~~~~~~~g~~~~A~~~~~~~~----~~p~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p 504 (597)
.+..+...+...|++++|.+.+++.. ..++ ...+..+...+...|++++|...+++++++..
T Consensus 91 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~ 160 (164)
T 3ro3_A 91 SCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISR 160 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHH
Confidence 56677777888888888888776653 1111 34567778888899999999999999887543
No 192
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=98.08 E-value=1.6e-05 Score=65.49 Aligned_cols=68 Identities=15% Similarity=0.040 Sum_probs=54.3
Q ss_pred HHHHHHHHHhhcCCHHHHHHHHhhCC-C-------CCCH-HHH----HHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCch
Q 007573 443 HYTCLVDILSRAGQLEKAWQITQGMP-F-------EADT-GVW----GSLLAACVINLNVELGELAAKKMRELDPQNSAV 509 (597)
Q Consensus 443 ~~~~l~~~~~~~g~~~~A~~~~~~~~-~-------~p~~-~~~----~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~ 509 (597)
.|..+..++.+.|++++|+..+++.. . .|+. ..| ...+.++...|++++|+..|+++++++|++..+
T Consensus 59 a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~d~~~ 138 (159)
T 2hr2_A 59 CHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERKGE 138 (159)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCSC
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHH
Confidence 66667777777777777777666544 4 7764 478 899999999999999999999999999998654
Q ss_pred H
Q 007573 510 Y 510 (597)
Q Consensus 510 ~ 510 (597)
+
T Consensus 139 ~ 139 (159)
T 2hr2_A 139 T 139 (159)
T ss_dssp C
T ss_pred H
Confidence 4
No 193
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=98.05 E-value=2.9e-05 Score=78.06 Aligned_cols=95 Identities=8% Similarity=-0.092 Sum_probs=75.8
Q ss_pred HHHHHHHHHhhcCCHHHHHHHHhhCC-CCCC----------------HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 007573 443 HYTCLVDILSRAGQLEKAWQITQGMP-FEAD----------------TGVWGSLLAACVINLNVELGELAAKKMRELDPQ 505 (597)
Q Consensus 443 ~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p~----------------~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~ 505 (597)
.+..+...|.+.|++++|...|++.. ..|+ ...|..+..++.+.|++++|+..++++++++|+
T Consensus 270 ~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~ 349 (457)
T 1kt0_A 270 IVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLDSA 349 (457)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCc
Confidence 34445555555555555555555443 1121 468889999999999999999999999999999
Q ss_pred CCchHHHHHHHHHhcCCcHHHHHHHHHHHhCC
Q 007573 506 NSAVYVMLSNLYAAAGMWRDVTRVRLLMKEQG 537 (597)
Q Consensus 506 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 537 (597)
++.+|..++.+|...|++++|+..|+++.+..
T Consensus 350 ~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~ 381 (457)
T 1kt0_A 350 NEKGLYRRGEAQLLMNEFESAKGDFEKVLEVN 381 (457)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred cHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC
Confidence 99999999999999999999999999998754
No 194
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=98.04 E-value=2.2e-05 Score=58.61 Aligned_cols=81 Identities=21% Similarity=0.205 Sum_probs=63.9
Q ss_pred hHHHHHHHHHHhhcCCHHHHHHHHhhCC-C-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHH
Q 007573 441 SEHYTCLVDILSRAGQLEKAWQITQGMP-F-EADTGVWGSLLAACVINLNVELGELAAKKMRELDPQNSAVYVMLSNLYA 518 (597)
Q Consensus 441 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~-~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 518 (597)
...+..+...+...|++++|.+.+++.. . +.+...+..+...+...|++++|+..++++++.+|.++.++..++.++.
T Consensus 9 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~ 88 (91)
T 1na3_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQ 88 (91)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Confidence 4566667777788888888888877654 2 3356678888888889999999999999999999988888888888877
Q ss_pred hcC
Q 007573 519 AAG 521 (597)
Q Consensus 519 ~~g 521 (597)
..|
T Consensus 89 ~~g 91 (91)
T 1na3_A 89 KQG 91 (91)
T ss_dssp HHC
T ss_pred hcC
Confidence 654
No 195
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.04 E-value=6.6e-05 Score=75.01 Aligned_cols=159 Identities=8% Similarity=-0.065 Sum_probs=119.6
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHCCCCCC----------------hHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCC
Q 007573 377 IAAFAQHGHYEKALIFFSQMGLNGFDPD----------------GITFLSLLSACGHAGKVNESMDLFELMVKVYGIIPS 440 (597)
Q Consensus 377 i~~~~~~g~~~~A~~~~~~m~~~g~~p~----------------~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~ 440 (597)
...+.+.|++++|++.|.++.+...... ...+..+...|...|++++|.+.+..+.+..+..++
T Consensus 11 a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~ 90 (434)
T 4b4t_Q 11 ARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFAK 90 (434)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCH
T ss_pred HHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccc
Confidence 3456678899999999988876532211 124778889999999999999999988765433333
Q ss_pred h----HHHHHHHHHHhhcCCHHHHHHHHhhCC-------CCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC--CC-
Q 007573 441 S----EHYTCLVDILSRAGQLEKAWQITQGMP-------FEAD-TGVWGSLLAACVINLNVELGELAAKKMRELD--PQ- 505 (597)
Q Consensus 441 ~----~~~~~l~~~~~~~g~~~~A~~~~~~~~-------~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~--p~- 505 (597)
. .+.+.+...+...|+.++|.+++++.. ..+. ..++..++..+...|++++|...++++...- .+
T Consensus 91 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~ 170 (434)
T 4b4t_Q 91 SKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDD 170 (434)
T ss_dssp HHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSC
T ss_pred hHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhccc
Confidence 2 234445556667899999999887653 2233 4578889999999999999999999988641 11
Q ss_pred ---CCchHHHHHHHHHhcCCcHHHHHHHHHHHh
Q 007573 506 ---NSAVYVMLSNLYAAAGMWRDVTRVRLLMKE 535 (597)
Q Consensus 506 ---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 535 (597)
...++..++.+|...|++++|..++++...
T Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~ 203 (434)
T 4b4t_Q 171 KPSLVDVHLLESKVYHKLRNLAKSKASLTAART 203 (434)
T ss_dssp STHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHH
Confidence 256788999999999999999999998865
No 196
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=98.01 E-value=3e-05 Score=75.41 Aligned_cols=65 Identities=9% Similarity=-0.057 Sum_probs=60.8
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCcHHHHHHHHHHHhC
Q 007573 472 DTGVWGSLLAACVINLNVELGELAAKKMRELDPQNSAVYVMLSNLYAAAGMWRDVTRVRLLMKEQ 536 (597)
Q Consensus 472 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 536 (597)
+...|..+..++...|++++|+..++++++++|+++.++..++.+|...|++++|.+.+++..+.
T Consensus 272 ~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l 336 (370)
T 1ihg_A 272 ALSCVLNIGACKLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEI 336 (370)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Confidence 35678889999999999999999999999999999999999999999999999999999998864
No 197
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=98.00 E-value=4e-06 Score=68.95 Aligned_cols=85 Identities=9% Similarity=-0.007 Sum_probs=58.7
Q ss_pred cCCHHHHHHHHhhCC-CCC-CHHHHHHHHHHHHhcCC----------HHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcC
Q 007573 454 AGQLEKAWQITQGMP-FEA-DTGVWGSLLAACVINLN----------VELGELAAKKMRELDPQNSAVYVMLSNLYAAAG 521 (597)
Q Consensus 454 ~g~~~~A~~~~~~~~-~~p-~~~~~~~l~~~~~~~g~----------~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 521 (597)
.+.+++|.+.+++.. ..| +...|..+..++...++ +++|+..|+++++++|++..+|..++.+|...|
T Consensus 15 ~~~feeA~~~~~~Ai~l~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~A~~~LG~ay~~lg 94 (158)
T 1zu2_A 15 ILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYTSFA 94 (158)
T ss_dssp HHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHhc
Confidence 334455555544433 222 44455555555554443 568999999999999999889999999998875
Q ss_pred -----------CcHHHHHHHHHHHhCCC
Q 007573 522 -----------MWRDVTRVRLLMKEQGV 538 (597)
Q Consensus 522 -----------~~~~A~~~~~~~~~~~~ 538 (597)
++++|++.|++..+...
T Consensus 95 ~l~P~~~~a~g~~~eA~~~~~kAl~l~P 122 (158)
T 1zu2_A 95 FLTPDETEAKHNFDLATQFFQQAVDEQP 122 (158)
T ss_dssp HHCCCHHHHHHHHHHHHHHHHHHHHHCT
T ss_pred ccCcchhhhhccHHHHHHHHHHHHHhCC
Confidence 89999999998887553
No 198
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=97.96 E-value=9.3e-05 Score=57.50 Aligned_cols=66 Identities=8% Similarity=-0.106 Sum_probs=61.4
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCcHHHHHHHHHHHhCC
Q 007573 472 DTGVWGSLLAACVINLNVELGELAAKKMRELDPQNSAVYVMLSNLYAAAGMWRDVTRVRLLMKEQG 537 (597)
Q Consensus 472 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 537 (597)
+...|..+...+...|++++|+..++++++.+|+++.++..++.+|...|++++|++.+++..+..
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 68 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYT 68 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSC
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC
Confidence 456788899999999999999999999999999999999999999999999999999999988644
No 199
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=97.95 E-value=4.8e-05 Score=76.37 Aligned_cols=117 Identities=9% Similarity=-0.022 Sum_probs=90.4
Q ss_pred HHHhhcCCHHHHHHHHhhCC---------CCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHh-----cCCCC---CchH
Q 007573 449 DILSRAGQLEKAWQITQGMP---------FEAD-TGVWGSLLAACVINLNVELGELAAKKMRE-----LDPQN---SAVY 510 (597)
Q Consensus 449 ~~~~~~g~~~~A~~~~~~~~---------~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-----~~p~~---~~~~ 510 (597)
..+...|++++|+.++++.. ..|+ ..+++.|+.+|...|++++|+.+++++++ ++|++ ...+
T Consensus 317 ~~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l 396 (490)
T 3n71_A 317 DKARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAV 396 (490)
T ss_dssp HHHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHH
T ss_pred HHHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHH
Confidence 34667899999998887653 2333 34789999999999999999999999986 46766 4567
Q ss_pred HHHHHHHHhcCCcHHHHHHHHHHHhCCCccCCCeeEEEECCEEEEEEeCCCCCcchHHHHHHHHHHHHHHhhc
Q 007573 511 VMLSNLYAAAGMWRDVTRVRLLMKEQGVTKQCAYSWIEIGNKVHYFLGGDMSHPCIDKIHLELKRASVQMKSV 583 (597)
Q Consensus 511 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~ 583 (597)
+.|+.+|..+|++++|..++++..+...+ .-...||...++...+.+....+++.
T Consensus 397 ~nLa~~~~~~G~~~eA~~~~~~Al~i~~~------------------~lG~~Hp~~~~~~~~l~~~~~e~~~~ 451 (490)
T 3n71_A 397 MRAGLTNWHAGHIEVGHGMICKAYAILLV------------------THGPSHPITKDLEAMRMQTEMELRMF 451 (490)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHH------------------HTCTTSHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHH------------------HhCCCChHHHHHHHHHHHHHHHHHHH
Confidence 89999999999999999999998763210 01125999999988888877655543
No 200
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=97.95 E-value=2.1e-05 Score=75.68 Aligned_cols=150 Identities=8% Similarity=0.003 Sum_probs=82.6
Q ss_pred ccHHHHHHHHHHhcCCHHHHHHHHhccC--CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHh
Q 007573 339 VSVCNAVITMYSRCGGILDSELAFRQIH--SPNLVSWNTIIAAFAQHGHYEKALIFFSQMGLNGFDPDGITFLSLLSACG 416 (597)
Q Consensus 339 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~ 416 (597)
...+..+...+.+.|++++|...|++.. .|+... +...|+.+++...+. ...|..+..++.
T Consensus 179 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~-------~~~~~~~~~~~~~l~----------~~~~~nla~~~~ 241 (338)
T 2if4_A 179 ADRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDFM-------FQLYGKYQDMALAVK----------NPCHLNIAACLI 241 (338)
T ss_dssp HHHHHHHHHHTCSSSCCHHHHHHHHHHHHHSCHHHH-------HTCCHHHHHHHHHHH----------THHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccchh-------hhhcccHHHHHHHHH----------HHHHHHHHHHHH
Confidence 3457778888899999999999998865 232221 222334444443321 136778888999
Q ss_pred ccCcHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHhhCC-CCCC-HHHHHHHHHH-HHhcCCHHHHH
Q 007573 417 HAGKVNESMDLFELMVKVYGIIPSSEHYTCLVDILSRAGQLEKAWQITQGMP-FEAD-TGVWGSLLAA-CVINLNVELGE 493 (597)
Q Consensus 417 ~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p~-~~~~~~l~~~-~~~~g~~~~a~ 493 (597)
+.|++++|...++...+. -+.+...|..+..+|...|++++|.+.|++.. ..|+ ...+..+... ....+..+.+.
T Consensus 242 ~~g~~~~A~~~~~~al~~--~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~~~~~~~~a~ 319 (338)
T 2if4_A 242 KLKRYDEAIGHCNIVLTE--EEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRALAEQEKALYQKQK 319 (338)
T ss_dssp TTTCCHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC---------------------------
T ss_pred HcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999998864 23357888999999999999999999999876 5564 4455555555 34556778899
Q ss_pred HHHHHHHhcCCCCC
Q 007573 494 LAAKKMRELDPQNS 507 (597)
Q Consensus 494 ~~~~~~~~~~p~~~ 507 (597)
..|.++++..|.++
T Consensus 320 ~~~~~~l~~~p~~~ 333 (338)
T 2if4_A 320 EMYKGIFKGKDEGG 333 (338)
T ss_dssp --------------
T ss_pred HHHHHhhCCCCCCC
Confidence 99999999998864
No 201
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=97.94 E-value=3.5e-05 Score=60.67 Aligned_cols=77 Identities=9% Similarity=-0.027 Sum_probs=61.0
Q ss_pred HHHHHhhCC-CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCcHHHHHHHHHHHhC
Q 007573 460 AWQITQGMP-FEA-DTGVWGSLLAACVINLNVELGELAAKKMRELDPQNSAVYVMLSNLYAAAGMWRDVTRVRLLMKEQ 536 (597)
Q Consensus 460 A~~~~~~~~-~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 536 (597)
|.+.+++.. ..| +...+..+...+...|++++|+..++++++.+|+++.++..++.+|...|++++|.+.+++..+.
T Consensus 4 a~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 82 (115)
T 2kat_A 4 ITERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGLAA 82 (115)
T ss_dssp HHHHHHHHHTTTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 444444432 234 56678888888888899999999999999999988888889999999999999999998887764
No 202
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=97.88 E-value=7.3e-05 Score=55.89 Aligned_cols=69 Identities=10% Similarity=0.076 Sum_probs=60.7
Q ss_pred CCCHHHHHHHHHHHHhcCC---HHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCcHHHHHHHHHHHhCCC
Q 007573 470 EADTGVWGSLLAACVINLN---VELGELAAKKMRELDPQNSAVYVMLSNLYAAAGMWRDVTRVRLLMKEQGV 538 (597)
Q Consensus 470 ~p~~~~~~~l~~~~~~~g~---~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 538 (597)
++++..+..+..++...++ .++|...++++++.+|+++.+...++..+...|++++|+..|+++.+...
T Consensus 3 p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p 74 (93)
T 3bee_A 3 AVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSND 74 (93)
T ss_dssp CCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCC
T ss_pred CCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 4567788888888755544 69999999999999999999999999999999999999999999988664
No 203
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=97.84 E-value=0.00015 Score=71.63 Aligned_cols=116 Identities=14% Similarity=0.141 Sum_probs=87.7
Q ss_pred HHHHhhcCCHHHHHHHHhhCC------CCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHh-----cCCCC---Cch
Q 007573 448 VDILSRAGQLEKAWQITQGMP------FEAD----TGVWGSLLAACVINLNVELGELAAKKMRE-----LDPQN---SAV 509 (597)
Q Consensus 448 ~~~~~~~g~~~~A~~~~~~~~------~~p~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-----~~p~~---~~~ 509 (597)
+..+.+.|++++|+.++++.. ..|+ ..+++.|+.+|...|++++|+.+++++++ .+|++ ...
T Consensus 294 ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~ 373 (429)
T 3qwp_A 294 IEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQ 373 (429)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHH
T ss_pred HHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHH
Confidence 344556778888877776542 2333 34788899999999999999999999986 35665 456
Q ss_pred HHHHHHHHHhcCCcHHHHHHHHHHHhCCCccCCCeeEEEECCEEEEEEeCCCCCcchHHHHHHHHHHHHHHh
Q 007573 510 YVMLSNLYAAAGMWRDVTRVRLLMKEQGVTKQCAYSWIEIGNKVHYFLGGDMSHPCIDKIHLELKRASVQMK 581 (597)
Q Consensus 510 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~~ 581 (597)
+..|+.+|..+|++++|..++++..+.-. . .-...||...+++..|.+....++
T Consensus 374 l~nLa~~~~~~g~~~eA~~~~~~Al~i~~-~-----------------~lG~~Hp~~~~~~~~l~~~~~e~~ 427 (429)
T 3qwp_A 374 VMKVGKLQLHQGMFPQAMKNLRLAFDIMR-V-----------------THGREHSLIEDLILLLEECDANIR 427 (429)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHH-H-----------------HTCTTSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHH-H-----------------hcCCCChHHHHHHHHHHHHHHHHh
Confidence 78999999999999999999999876321 0 011259999999999998887765
No 204
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=97.80 E-value=0.00031 Score=57.27 Aligned_cols=89 Identities=10% Similarity=-0.114 Sum_probs=48.3
Q ss_pred HHHHHhhcCCHHHHHHHHhhCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHh---
Q 007573 447 LVDILSRAGQLEKAWQITQGMPFEADTGVWGSLLAACVI----NLNVELGELAAKKMRELDPQNSAVYVMLSNLYAA--- 519 (597)
Q Consensus 447 l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~--- 519 (597)
|...|...+..++|.+.|++.....+...+..|...|.. .+++++|+..++++.+. .++..+..|+.+|..
T Consensus 31 lg~~y~~g~~~~~A~~~~~~Aa~~g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~--g~~~a~~~Lg~~y~~G~g 108 (138)
T 1klx_A 31 LSLVSNSQINKQKLFQYLSKACELNSGNGCRFLGDFYENGKYVKKDLRKAAQYYSKACGL--NDQDGCLILGYKQYAGKG 108 (138)
T ss_dssp HHHHTCTTSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSS
T ss_pred HHHHHHcCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHcC--CCHHHHHHHHHHHHCCCC
Confidence 333333333444444444433322344444555555544 55666666666666654 345566666666666
Q ss_pred -cCCcHHHHHHHHHHHhCC
Q 007573 520 -AGMWRDVTRVRLLMKEQG 537 (597)
Q Consensus 520 -~g~~~~A~~~~~~~~~~~ 537 (597)
.+++++|.+++++..+.|
T Consensus 109 ~~~d~~~A~~~~~~Aa~~g 127 (138)
T 1klx_A 109 VVKNEKQAVKTFEKACRLG 127 (138)
T ss_dssp SCCCHHHHHHHHHHHHHTT
T ss_pred CCcCHHHHHHHHHHHHHCC
Confidence 666666666666666554
No 205
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=97.74 E-value=0.0001 Score=72.69 Aligned_cols=103 Identities=12% Similarity=0.059 Sum_probs=75.6
Q ss_pred cCCHHHHHHHHhhCC---------CCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHh-----cCCCC---CchHHHHHH
Q 007573 454 AGQLEKAWQITQGMP---------FEAD-TGVWGSLLAACVINLNVELGELAAKKMRE-----LDPQN---SAVYVMLSN 515 (597)
Q Consensus 454 ~g~~~~A~~~~~~~~---------~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-----~~p~~---~~~~~~l~~ 515 (597)
.|++++|+.++++.. ..|+ ..+++.|+.+|...|++++|+.+++++++ ++|++ ...++.|+.
T Consensus 311 ~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~ 390 (433)
T 3qww_A 311 YKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGR 390 (433)
T ss_dssp TSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHH
Confidence 456666666665432 2233 34788899999999999999999999986 46666 456889999
Q ss_pred HHHhcCCcHHHHHHHHHHHhCCCccCCCeeEEEECCEEEEEEeCCCCCcchHHHHHHHH
Q 007573 516 LYAAAGMWRDVTRVRLLMKEQGVTKQCAYSWIEIGNKVHYFLGGDMSHPCIDKIHLELK 574 (597)
Q Consensus 516 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~p~~~~~~~~l~ 574 (597)
+|..+|++++|..++++..+...+ .-...||...++...|+
T Consensus 391 ~~~~qg~~~eA~~~~~~Al~i~~~------------------~lG~~Hp~~~~l~~~l~ 431 (433)
T 3qww_A 391 LYMGLENKAAGEKALKKAIAIMEV------------------AHGKDHPYISEIKQEIE 431 (433)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHH------------------HTCTTCHHHHHHHHHHH
T ss_pred HHHhccCHHHHHHHHHHHHHHHHH------------------HcCCCChHHHHHHHHHh
Confidence 999999999999999998763210 01125998888877765
No 206
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=97.67 E-value=0.0007 Score=69.67 Aligned_cols=150 Identities=13% Similarity=0.019 Sum_probs=122.1
Q ss_pred CCHHHHHHHHHHHHHCCCCCC-hHHHHHHHHHHhccCc----------HHHHHHHHHHhHHhcCCCCChHHHHHHHHHHh
Q 007573 384 GHYEKALIFFSQMGLNGFDPD-GITFLSLLSACGHAGK----------VNESMDLFELMVKVYGIIPSSEHYTCLVDILS 452 (597)
Q Consensus 384 g~~~~A~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~g~----------~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~ 452 (597)
...++|++.++++... .|+ ...|+.--.++...|+ ++++.+.++.+.+. -+-+..+|..-..++.
T Consensus 43 ~~~eeal~~~~~~l~~--nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~--~pK~y~aW~hR~w~l~ 118 (567)
T 1dce_A 43 ELDESVLELTSQILGA--NPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRV--NPKSYGTWHHRCWLLS 118 (567)
T ss_dssp CCSHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHH--CchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHH
Confidence 3457889999999875 565 4456655556666666 89999999999875 2345778888888899
Q ss_pred hcC--CHHHHHHHHhhCC--CCCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhc-------
Q 007573 453 RAG--QLEKAWQITQGMP--FEADTGVWGSLLAACVINL-NVELGELAAKKMRELDPQNSAVYVMLSNLYAAA------- 520 (597)
Q Consensus 453 ~~g--~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~g-~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~------- 520 (597)
+.| +++++.+.++++. .+-+..+|+.-..+....| .++++++.++++++.+|.+..+|...+.++.+.
T Consensus 119 ~l~~~~~~~el~~~~k~l~~d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~saW~~r~~ll~~l~~~~~~~ 198 (567)
T 1dce_A 119 RLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSG 198 (567)
T ss_dssp TCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCSS
T ss_pred HcccccHHHHHHHHHHHHhhccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCCccHHHHHHHHHHhhccccccc
Confidence 999 7799999999887 3446789999998888889 899999999999999999999999999998874
Q ss_pred -------CCcHHHHHHHHHHHhCC
Q 007573 521 -------GMWRDVTRVRLLMKEQG 537 (597)
Q Consensus 521 -------g~~~~A~~~~~~~~~~~ 537 (597)
+.++++.+.+++.....
T Consensus 199 ~~~~~~~~~~~eel~~~~~ai~~~ 222 (567)
T 1dce_A 199 PQGRLPENVLLKELELVQNAFFTD 222 (567)
T ss_dssp SCCSSCHHHHHHHHHHHHHHHHHC
T ss_pred ccccccHHHHHHHHHHHHHHHhhC
Confidence 56789999988887644
No 207
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=97.63 E-value=1.8e-06 Score=82.64 Aligned_cols=254 Identities=13% Similarity=0.103 Sum_probs=114.3
Q ss_pred chHHHHHHHHHhcCChHHHHHHHhhcCCCCcchHHHHHHHHHhCCChhHHHHHHhhCCCC--CcchHHHHHHHHHcCCCh
Q 007573 51 FVNNAKISALSRAGKISAARQLFDQMTTKDVITWNAIITGYWQNGFLQESKNLFQSMPVK--NIVSWNCMIAGCIDNDRI 128 (597)
Q Consensus 51 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~ll~~~~~~~~~ 128 (597)
.+|+.|..++.+.|++.+|+..|= ...|+..|..+|.+..+.|.+++-+..+....+. ++..=+.|+-+|++.+++
T Consensus 55 ~VWs~LgkAqL~~~~v~eAIdsyI--kA~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~~ke~~IDteLi~ayAk~~rL 132 (624)
T 3lvg_A 55 AVWSQLAKAQLQKGMVKEAIDSYI--KADDPSSYMEVVQAANTSGNWEELVKYLQMARKKARESYVETELIFALAKTNRL 132 (624)
T ss_dssp CCSSSHHHHTTTSSSCTTTTTSSC--CCSCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTTCCSTTTTHHHHHHHHTSCSS
T ss_pred cHHHHHHHHHHccCchHHHHHHHH--hCCChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccHHHHHHHHHhhCcH
Confidence 344445555544444444444331 1223333444444444445555444444444332 333444444444444443
Q ss_pred HHHHHHHccCCCCChhhHHHHHHHHHcCCChHHHHHHHccCCCCCchhHHHHHHHHHhCCChhHHHHHHHhcccCCcchH
Q 007573 129 DDAFDYFQAMPERNTATYNAMISGFLKHGRLEEATRLFEQMPRRNVISYTAMLDGFMKKGEVDKARALSDYMSFKNVVSW 208 (597)
Q Consensus 129 ~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~ 208 (597)
.+-.+.+ ..||..-...+..-|...|.++.|.-+|..+.. |.-|...+.+.|++..|.+.-+ ...++.||
T Consensus 133 ~elEefl---~~~N~A~iq~VGDrcf~e~lYeAAKilys~isN-----~akLAstLV~L~~yq~AVdaAr--KAns~ktW 202 (624)
T 3lvg_A 133 AELEEFI---NGPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSN-----FGRLASTLVHLGEYQAAVDGAR--KANSTRTW 202 (624)
T ss_dssp STTTSTT---SCCSSSCTHHHHHHHHHSCCSTTSSTTGGGSCC-----CTTTSSSSSSCSGGGSSTTTTT--TCCSSCSH
T ss_pred HHHHHHH---cCCCcccHHHHHHHHHHccCHHHHHHHHHhCcc-----HHHHHHHHHHHHHHHHHHHHHH--hcCChhHH
Confidence 3222111 123333333444444444444444444443321 1222222333333333322211 12356777
Q ss_pred HHHHHHHHcCCChHHHHHHHhhcCCCCCCchHHHHHHHHHHhcCCHHHHHHHHhhcC---CCChhHHHHHHHHHHHcCCh
Q 007573 209 TVMITGYVKNERFCEARELFYRMPDYDKNVFVVTAMITGFCKVGMLENARLLFERIQ---PKDCVSFNAMIAGYAQNGVA 285 (597)
Q Consensus 209 ~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~ 285 (597)
..+-.+|...+.+..|...=-.+.- .+ .-...++..|-+.|.+++-+.+++.-. ......|+.|.-.|++- ++
T Consensus 203 KeV~~ACvd~~EfrLAqicGLniIv-ha--deL~elv~~YE~~G~f~ELIsLlEaglglErAHmGmFTELaILYsKY-~P 278 (624)
T 3lvg_A 203 KEVCFACVDGKEFRLAQMCGLHIVV-HA--DELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKF-KP 278 (624)
T ss_dssp HHHTHHHHHSCTTTTTTHHHHHHHC-CS--SCCSGGGSSSSTTCCCTTSTTTHHHHTTSTTCCHHHHHHHHHHHHSS-CT
T ss_pred HHHHHHHhCchHHHHHHHhcchhcc-cH--HHHHHHHHHHHhCCCHHHHHHHHHHHhCCCchhHHHHHHHHHHHHhc-CH
Confidence 7777777777776654332111110 01 111235556667777777777776643 23455677777666665 45
Q ss_pred hHHHHHHHHhHHCCCCCCHHHHHHHHHHHhccchhHHHHHH
Q 007573 286 EEALRLFSGMIKMDMQPDDATLVSVFTACSALQLLNEGRQS 326 (597)
Q Consensus 286 ~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~ 326 (597)
++..+.++..-.+ .+. .-++++|.+...|.++.-+
T Consensus 279 eKlmEHlklf~sr---iNi---pKviracE~ahLW~ElvfL 313 (624)
T 3lvg_A 279 QKMREHLELFWSR---VNI---PKVLRAAEQAHLWAELVFL 313 (624)
T ss_dssp THHHHHHTTSSSS---SCC---TTTHHHHTTTTCHHHHHHH
T ss_pred HHHHHHHHHHHHh---ccH---HHHHHHHHHHhhHHHHHHH
Confidence 5555554432221 111 1245566555555544433
No 208
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=97.62 E-value=2.1e-05 Score=75.46 Aligned_cols=231 Identities=11% Similarity=0.092 Sum_probs=166.9
Q ss_pred CCCcchHHHHHHHHHhcCChHHHHHHHhhcCC--CCcchHHHHHHHHHhCCChhHHHHHHhhCCCCCcchHHHHHHHHHc
Q 007573 47 TQYVFVNNAKISALSRAGKISAARQLFDQMTT--KDVITWNAIITGYWQNGFLQESKNLFQSMPVKNIVSWNCMIAGCID 124 (597)
Q Consensus 47 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ll~~~~~ 124 (597)
..|+..|..++.+..+.|.+++-.+.+....+ +++..=+.|+-+|++.++..+-.++ +..+|..-...+.+-|..
T Consensus 80 A~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~~ke~~IDteLi~ayAk~~rL~elEef---l~~~N~A~iq~VGDrcf~ 156 (624)
T 3lvg_A 80 ADDPSSYMEVVQAANTSGNWEELVKYLQMARKKARESYVETELIFALAKTNRLAELEEF---INGPNNAHIQQVGDRCYD 156 (624)
T ss_dssp CSCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTTCCSTTTTHHHHHHHHTSCSSSTTTST---TSCCSSSCTHHHHHHHHH
T ss_pred CCChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccHHHHHHHHHhhCcHHHHHHH---HcCCCcccHHHHHHHHHH
Confidence 68889999999999999999999999987766 6777788999999999987653322 224688888999999999
Q ss_pred CCChHHHHHHHccCCCCChhhHHHHHHHHHcCCChHHHHHHHccCCCCCchhHHHHHHHHHhCCChhHHHHHHH-hcccC
Q 007573 125 NDRIDDAFDYFQAMPERNTATYNAMISGFLKHGRLEEATRLFEQMPRRNVISYTAMLDGFMKKGEVDKARALSD-YMSFK 203 (597)
Q Consensus 125 ~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~-~m~~~ 203 (597)
.|.++.|.-+|..+. -|..|...+.+.|++..|.+.-++. .++.||-.+-.+|...+.+.-|.-.-- -.+.+
T Consensus 157 e~lYeAAKilys~is-----N~akLAstLV~L~~yq~AVdaArKA--ns~ktWKeV~~ACvd~~EfrLAqicGLniIvha 229 (624)
T 3lvg_A 157 EKMYDAAKLLYNNVS-----NFGRLASTLVHLGEYQAAVDGARKA--NSTRTWKEVCFACVDGKEFRLAQMCGLHIVVHA 229 (624)
T ss_dssp SCCSTTSSTTGGGSC-----CCTTTSSSSSSCSGGGSSTTTTTTC--CSSCSHHHHTHHHHHSCTTTTTTHHHHHHHCCS
T ss_pred ccCHHHHHHHHHhCc-----cHHHHHHHHHHHHHHHHHHHHHHhc--CChhHHHHHHHHHhCchHHHHHHHhcchhcccH
Confidence 999999988887663 3444666677888887777654433 577889988889999888877644322 22333
Q ss_pred CcchHHHHHHHHHcCCChHHHHHHHhhcCCCC-CCchHHHHHHHHHHhcCCHHHHHHHHhhcCC----C-------ChhH
Q 007573 204 NVVSWTVMITGYVKNERFCEARELFYRMPDYD-KNVFVVTAMITGFCKVGMLENARLLFERIQP----K-------DCVS 271 (597)
Q Consensus 204 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~-------~~~~ 271 (597)
|. ...++..|-..|.+++-+.+++....++ ....+++-|.-.|++- +.++..+.++..-. | ....
T Consensus 230 de--L~elv~~YE~~G~f~ELIsLlEaglglErAHmGmFTELaILYsKY-~PeKlmEHlklf~sriNipKviracE~ahL 306 (624)
T 3lvg_A 230 DE--LEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKF-KPQKMREHLELFWSRVNIPKVLRAAEQAHL 306 (624)
T ss_dssp SC--CSGGGSSSSTTCCCTTSTTTHHHHTTSTTCCHHHHHHHHHHHHSS-CTTHHHHHHTTSSSSSCCTTTHHHHTTTTC
T ss_pred HH--HHHHHHHHHhCCCHHHHHHHHHHHhCCCchhHHHHHHHHHHHHhc-CHHHHHHHHHHHHHhccHHHHHHHHHHHhh
Confidence 22 2234556778888888888888877644 3556777788778775 44555554443322 1 4457
Q ss_pred HHHHHHHHHHcCChhHHHH
Q 007573 272 FNAMIAGYAQNGVAEEALR 290 (597)
Q Consensus 272 ~~~li~~~~~~g~~~~A~~ 290 (597)
|..++-.|.+-.+++.|..
T Consensus 307 W~ElvfLY~~ydE~DnA~l 325 (624)
T 3lvg_A 307 WAELVFLYDKYEEYDNAII 325 (624)
T ss_dssp HHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHHhcchhHHHHHH
Confidence 8888888888888887653
No 209
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=97.61 E-value=7.5e-05 Score=61.36 Aligned_cols=87 Identities=13% Similarity=0.016 Sum_probs=54.2
Q ss_pred cHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCC----------HHHHHHHHhhCC-CCC-CHHHHHHHHHHHHhc-
Q 007573 420 KVNESMDLFELMVKVYGIIPSSEHYTCLVDILSRAGQ----------LEKAWQITQGMP-FEA-DTGVWGSLLAACVIN- 486 (597)
Q Consensus 420 ~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~----------~~~A~~~~~~~~-~~p-~~~~~~~l~~~~~~~- 486 (597)
.+++|.+.++...+. -+.+...|..+..++...|+ +++|+..|++.. +.| +..+|..++.+|...
T Consensus 17 ~feeA~~~~~~Ai~l--~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~A~~~LG~ay~~lg 94 (158)
T 1zu2_A 17 LFEQIRQDAENTYKS--NPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYTSFA 94 (158)
T ss_dssp HHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHhc
Confidence 445555555554432 11234455555555554443 346666666654 444 355677777777665
Q ss_pred ----------CCHHHHHHHHHHHHhcCCCCCc
Q 007573 487 ----------LNVELGELAAKKMRELDPQNSA 508 (597)
Q Consensus 487 ----------g~~~~a~~~~~~~~~~~p~~~~ 508 (597)
|++++|+..|+++++++|++..
T Consensus 95 ~l~P~~~~a~g~~~eA~~~~~kAl~l~P~~~~ 126 (158)
T 1zu2_A 95 FLTPDETEAKHNFDLATQFFQQAVDEQPDNTH 126 (158)
T ss_dssp HHCCCHHHHHHHHHHHHHHHHHHHHHCTTCHH
T ss_pred ccCcchhhhhccHHHHHHHHHHHHHhCCCCHH
Confidence 5899999999999999999754
No 210
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=97.60 E-value=0.0013 Score=53.48 Aligned_cols=112 Identities=14% Similarity=-0.012 Sum_probs=94.4
Q ss_pred CCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhh----cCCHHH
Q 007573 384 GHYEKALIFFSQMGLNGFDPDGITFLSLLSACGHAGKVNESMDLFELMVKVYGIIPSSEHYTCLVDILSR----AGQLEK 459 (597)
Q Consensus 384 g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~ 459 (597)
+++++|+++|++..+.| .|+.. +...+...+.+++|.+.|++..+. -++..+..|..+|.. .++.++
T Consensus 9 ~d~~~A~~~~~~aa~~g-~~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~----g~~~a~~~Lg~~y~~G~g~~~d~~~ 79 (138)
T 1klx_A 9 KDLKKAIQYYVKACELN-EMFGC----LSLVSNSQINKQKLFQYLSKACEL----NSGNGCRFLGDFYENGKYVKKDLRK 79 (138)
T ss_dssp HHHHHHHHHHHHHHHTT-CTTHH----HHHHTCTTSCHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHCSSSCCCHHH
T ss_pred cCHHHHHHHHHHHHcCC-CHhhh----HHHHHHcCCCHHHHHHHHHHHHcC----CCHHHHHHHHHHHHcCCCCCccHHH
Confidence 46889999999999887 55544 667777888899999999998774 367788888888988 889999
Q ss_pred HHHHHhhCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhcCC
Q 007573 460 AWQITQGMPFEADTGVWGSLLAACVI----NLNVELGELAAKKMRELDP 504 (597)
Q Consensus 460 A~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~p 504 (597)
|.+.|++.....++..+..|...|.. .++.++|+..++++.+.+.
T Consensus 80 A~~~~~~Aa~~g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~ 128 (138)
T 1klx_A 80 AAQYYSKACGLNDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLGS 128 (138)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCCC
Confidence 99999987645678888889999988 8999999999999998764
No 211
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=97.60 E-value=0.00022 Score=52.92 Aligned_cols=65 Identities=22% Similarity=0.206 Sum_probs=60.2
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCcHHHHHHHHHHHhCC
Q 007573 473 TGVWGSLLAACVINLNVELGELAAKKMRELDPQNSAVYVMLSNLYAAAGMWRDVTRVRLLMKEQG 537 (597)
Q Consensus 473 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 537 (597)
...+..+...+...|++++|+..++++++.+|+++.++..++.++...|++++|.+.+++..+..
T Consensus 9 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~ 73 (91)
T 1na3_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD 73 (91)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC
Confidence 45788888899999999999999999999999999999999999999999999999999988743
No 212
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=97.59 E-value=0.00027 Score=55.39 Aligned_cols=81 Identities=11% Similarity=-0.047 Sum_probs=57.7
Q ss_pred HHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHhhCC-CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 007573 424 SMDLFELMVKVYGIIPSSEHYTCLVDILSRAGQLEKAWQITQGMP-FEA-DTGVWGSLLAACVINLNVELGELAAKKMRE 501 (597)
Q Consensus 424 a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 501 (597)
|.+.|+...+. -+.+...+..+...|...|++++|.+.+++.. ..| +...|..+..++...|++++|+..++++++
T Consensus 4 a~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 81 (115)
T 2kat_A 4 ITERLEAMLAQ--GTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGLA 81 (115)
T ss_dssp HHHHHHHHHTT--TCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHh--CCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 45555655532 12346677777777888888888888777654 333 466788888888888999999999998888
Q ss_pred cCCCC
Q 007573 502 LDPQN 506 (597)
Q Consensus 502 ~~p~~ 506 (597)
+.|.+
T Consensus 82 ~~~~~ 86 (115)
T 2kat_A 82 AAQSR 86 (115)
T ss_dssp HHHHH
T ss_pred hcccc
Confidence 87754
No 213
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=97.49 E-value=0.00042 Score=52.47 Aligned_cols=64 Identities=17% Similarity=0.105 Sum_probs=38.2
Q ss_pred HHHHHhhcCCHHHHHHHHhhCC-CCC-CHH-HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchH
Q 007573 447 LVDILSRAGQLEKAWQITQGMP-FEA-DTG-VWGSLLAACVINLNVELGELAAKKMRELDPQNSAVY 510 (597)
Q Consensus 447 l~~~~~~~g~~~~A~~~~~~~~-~~p-~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~ 510 (597)
.+..+.+.|++++|.+.+++.. ..| +.. .+..+..++...|++++|+..++++++++|+++.++
T Consensus 6 ~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~ 72 (99)
T 2kc7_A 6 TIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPALQ 72 (99)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHH
Confidence 3445556666666666666544 223 344 566666666666666666666666666666665544
No 214
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=97.48 E-value=0.0032 Score=59.48 Aligned_cols=139 Identities=11% Similarity=-0.031 Sum_probs=74.1
Q ss_pred CCChhhHHHHHHHHH--HcC---CHHHHHHHHHHHHHCCCCCC-hHHHHHHHHHHhc----c----CcHHHHHHHHHHhH
Q 007573 367 SPNLVSWNTIIAAFA--QHG---HYEKALIFFSQMGLNGFDPD-GITFLSLLSACGH----A----GKVNESMDLFELMV 432 (597)
Q Consensus 367 ~~~~~~~~~li~~~~--~~g---~~~~A~~~~~~m~~~g~~p~-~~~~~~ll~~~~~----~----g~~~~a~~~~~~~~ 432 (597)
+.+...|...+.+.. ..+ ...+|+.+|++..+. .|+ ...+..+..++.. . .........++...
T Consensus 191 p~~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~l--DP~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a~~ 268 (372)
T 3ly7_A 191 PHRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQS--SPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNIV 268 (372)
T ss_dssp CSSGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHHHH
Confidence 456677777766543 233 347888999988875 666 3344433333320 0 01111111111111
Q ss_pred HhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHhhCC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCC
Q 007573 433 KVYGIIPSSEHYTCLVDILSRAGQLEKAWQITQGMP-FEADTGVWGSLLAACVINLNVELGELAAKKMRELDPQNS 507 (597)
Q Consensus 433 ~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~ 507 (597)
.....+.++..|..+...+...|++++|...++++. ..|+...|..+...+...|++++|.+.+++++.++|.++
T Consensus 269 a~~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln~s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~P~~~ 344 (372)
T 3ly7_A 269 TLPELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLEMSWLNYVLLGKVYEMKGMNREAADAYLTAFNLRPGAN 344 (372)
T ss_dssp TCGGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCSHH
T ss_pred hcccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcC
Confidence 111123345566666555555666666666666654 445655555556666666666666666666666666543
No 215
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=97.32 E-value=0.2 Score=51.59 Aligned_cols=114 Identities=8% Similarity=-0.083 Sum_probs=61.2
Q ss_pred CCHHHHHHHHHHHHHCCCCCChHH----HHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHH
Q 007573 384 GHYEKALIFFSQMGLNGFDPDGIT----FLSLLSACGHAGKVNESMDLFELMVKVYGIIPSSEHYTCLVDILSRAGQLEK 459 (597)
Q Consensus 384 g~~~~A~~~~~~m~~~g~~p~~~~----~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~ 459 (597)
.+.+.|...+......+ ..+... ...+.......+...++...+...... .++.....-.+....+.|+++.
T Consensus 228 ~d~~~A~~~~~~~~~~~-~~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~e~~~r~Alr~~d~~~ 303 (618)
T 1qsa_A 228 QDAENARLMIPSLAQAQ-QLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMR---SQSTSLIERRVRMALGTGDRRG 303 (618)
T ss_dssp HCHHHHHHHHHHHHHHT-TCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHT---CCCHHHHHHHHHHHHHHTCHHH
T ss_pred cCHHHHHHHHHhhhhcc-CCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhcccc---CCChHHHHHHHHHHHHCCCHHH
Confidence 36777888887775433 223222 222223334444244455555544322 2333333334444456788888
Q ss_pred HHHHHhhCCCCC-C-HHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 007573 460 AWQITQGMPFEA-D-TGVWGSLLAACVINLNVELGELAAKKMRE 501 (597)
Q Consensus 460 A~~~~~~~~~~p-~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 501 (597)
|...|+.|...+ + ..-.-=+..+....|+.++|..+|+++.+
T Consensus 304 a~~~~~~l~~~~~~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~ 347 (618)
T 1qsa_A 304 LNTWLARLPMEAKEKDEWRYWQADLLLERGREAEAKEILHQLMQ 347 (618)
T ss_dssp HHHHHHHSCTTGGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHccccccccHhHHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 888888876322 2 22222344556677888888888887764
No 216
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=97.26 E-value=0.0016 Score=49.17 Aligned_cols=85 Identities=12% Similarity=0.056 Sum_probs=42.9
Q ss_pred HHHHhccCcHHHHHHHHHHhHHhcCCCCChH-HHHHHHHHHhhcCCHHHHHHHHhhCC-CCCC-HHHHHHHHHHHHhcCC
Q 007573 412 LSACGHAGKVNESMDLFELMVKVYGIIPSSE-HYTCLVDILSRAGQLEKAWQITQGMP-FEAD-TGVWGSLLAACVINLN 488 (597)
Q Consensus 412 l~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p~-~~~~~~l~~~~~~~g~ 488 (597)
...+...|++++|.+.++.+.+. .+.+.. .+..+..+|...|++++|.+.|++.. ..|+ ...+.. +.
T Consensus 7 a~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~--------~~ 76 (99)
T 2kc7_A 7 IKELINQGDIENALQALEEFLQT--EPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPALQAR--------KM 76 (99)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHH--CSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHHH--------HH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHH--CCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHH--------HH
Confidence 34455556666666666665543 112344 55556666666666666666665543 2332 222211 34
Q ss_pred HHHHHHHHHHHHhcCCCC
Q 007573 489 VELGELAAKKMRELDPQN 506 (597)
Q Consensus 489 ~~~a~~~~~~~~~~~p~~ 506 (597)
+.++...++++...+|++
T Consensus 77 ~~~a~~~~~~~~~~~p~~ 94 (99)
T 2kc7_A 77 VMDILNFYNKDMYNQLEH 94 (99)
T ss_dssp HHHHHHHHCCTTHHHHCC
T ss_pred HHHHHHHHHHHhccCccc
Confidence 445555555555555444
No 217
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=97.26 E-value=0.0013 Score=53.39 Aligned_cols=87 Identities=13% Similarity=-0.008 Sum_probs=44.1
Q ss_pred cHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcC---CHHHHHHHHhhCC-CC-C--CHHHHHHHHHHHHhcCCHHHH
Q 007573 420 KVNESMDLFELMVKVYGIIPSSEHYTCLVDILSRAG---QLEKAWQITQGMP-FE-A--DTGVWGSLLAACVINLNVELG 492 (597)
Q Consensus 420 ~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~-~~-p--~~~~~~~l~~~~~~~g~~~~a 492 (597)
.+..+.+-|.+..+. + .++..+.-.+..++++.+ +.+++..++++.. .. | ....+-.|.-+|.+.|++++|
T Consensus 13 ~l~~~~~~y~~e~~~-~-~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A 90 (152)
T 1pc2_A 13 DLLKFEKKFQSEKAA-G-SVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKA 90 (152)
T ss_dssp HHHHHHHHHHHHHHT-T-CCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHH
T ss_pred HHHHHHHHHHHHHcc-C-CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHH
Confidence 344455555544432 2 245555555555565555 3445555555443 12 3 133444455555566666666
Q ss_pred HHHHHHHHhcCCCCCc
Q 007573 493 ELAAKKMRELDPQNSA 508 (597)
Q Consensus 493 ~~~~~~~~~~~p~~~~ 508 (597)
.+.++.+++.+|++..
T Consensus 91 ~~y~~~lL~ieP~n~Q 106 (152)
T 1pc2_A 91 LKYVRGLLQTEPQNNQ 106 (152)
T ss_dssp HHHHHHHHHHCTTCHH
T ss_pred HHHHHHHHhcCCCCHH
Confidence 6666666666665443
No 218
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=97.24 E-value=0.0014 Score=49.70 Aligned_cols=64 Identities=11% Similarity=0.179 Sum_probs=40.6
Q ss_pred ChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHhccCcHHHHHHHHHHhHH
Q 007573 369 NLVSWNTIIAAFAQHGHYEKALIFFSQMGLNGFDPDGITFLSLLSACGHAGKVNESMDLFELMVK 433 (597)
Q Consensus 369 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 433 (597)
+...|..+...|...|++++|+..|++..+.. +.+...|..+..++...|++++|.+.|++..+
T Consensus 6 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~ 69 (100)
T 3ma5_A 6 DPFTRYALAQEHLKHDNASRALALFEELVETD-PDYVGTYYHLGKLYERLDRTDDAIDTYAQGIE 69 (100)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 44556666666666777777777777666542 22345566666666677777777776666654
No 219
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=97.24 E-value=0.012 Score=63.86 Aligned_cols=152 Identities=18% Similarity=0.094 Sum_probs=84.6
Q ss_pred HHHHhCCChhHHHH-HHHhcccCCcchHHHHHHHHHcCCChHHHHHHHhhcCCCCCCchHHHHHHHHHHhcCCHHHHHHH
Q 007573 182 DGFMKKGEVDKARA-LSDYMSFKNVVSWTVMITGYVKNERFCEARELFYRMPDYDKNVFVVTAMITGFCKVGMLENARLL 260 (597)
Q Consensus 182 ~~~~~~g~~~~A~~-~~~~m~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 260 (597)
......+++++|.+ ++..+. +......++..+.+.|..++|.++.+. + ..-.......|++++|.++
T Consensus 607 ~~~~~~~~~~~a~~~~l~~i~--~~~~~~~~~~~l~~~~~~~~a~~~~~~-----~-----~~~f~~~l~~~~~~~A~~~ 674 (814)
T 3mkq_A 607 QTLTLRGEIEEAIENVLPNVE--GKDSLTKIARFLEGQEYYEEALNISPD-----Q-----DQKFELALKVGQLTLARDL 674 (814)
T ss_dssp HHHHHTTCHHHHHHHTGGGCC--CHHHHHHHHHHHHHTTCHHHHHHHCCC-----H-----HHHHHHHHHHTCHHHHHHH
T ss_pred hHHHHhCCHHHHHHHHHhcCC--chHHHHHHHHHHHhCCChHHheecCCC-----c-----chheehhhhcCCHHHHHHH
Confidence 33345666666665 432221 022225556666667777776655432 1 1123445667888888887
Q ss_pred HhhcCCCChhHHHHHHHHHHHcCChhHHHHHHHHhHHCCCCCCHHHHHHHHHHHhccchhHHHHHHHHHHHHhCCCCccc
Q 007573 261 FERIQPKDCVSFNAMIAGYAQNGVAEEALRLFSGMIKMDMQPDDATLVSVFTACSALQLLNEGRQSHVLVIRNGFEANVS 340 (597)
Q Consensus 261 ~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 340 (597)
.+.+ .+...|..+...+.+.++++.|.+.|.++.. |..+...+...++.+....+.+.....|
T Consensus 675 ~~~~--~~~~~W~~la~~al~~~~~~~A~~~y~~~~d---------~~~l~~l~~~~~~~~~~~~~~~~a~~~~------ 737 (814)
T 3mkq_A 675 LTDE--SAEMKWRALGDASLQRFNFKLAIEAFTNAHD---------LESLFLLHSSFNNKEGLVTLAKDAETTG------ 737 (814)
T ss_dssp HTTC--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHTC---------HHHHHHHHHHTTCHHHHHHHHHHHHHTT------
T ss_pred HHhh--CcHhHHHHHHHHHHHcCCHHHHHHHHHHccC---------hhhhHHHHHHcCCHHHHHHHHHHHHHcC------
Confidence 7665 3456788888888888888888888877643 2233333333555555444444444433
Q ss_pred HHHHHHHHHHhcCCHHHHHHHH
Q 007573 341 VCNAVITMYSRCGGILDSELAF 362 (597)
Q Consensus 341 ~~~~l~~~~~~~g~~~~A~~~~ 362 (597)
-++....+|.+.|++++|++++
T Consensus 738 ~~~~A~~~~~~~g~~~~a~~~~ 759 (814)
T 3mkq_A 738 KFNLAFNAYWIAGDIQGAKDLL 759 (814)
T ss_dssp CHHHHHHHHHHHTCHHHHHHHH
T ss_pred chHHHHHHHHHcCCHHHHHHHH
Confidence 1233344455566666665554
No 220
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=97.22 E-value=0.0015 Score=64.34 Aligned_cols=93 Identities=15% Similarity=0.070 Sum_probs=63.7
Q ss_pred cCcHHHHHHHHHHhHHhcC--CCC---C-hHHHHHHHHHHhhcCCHHHHHHHHhhCC---------CCCCH-HHHHHHHH
Q 007573 418 AGKVNESMDLFELMVKVYG--IIP---S-SEHYTCLVDILSRAGQLEKAWQITQGMP---------FEADT-GVWGSLLA 481 (597)
Q Consensus 418 ~g~~~~a~~~~~~~~~~~~--~~p---~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~---------~~p~~-~~~~~l~~ 481 (597)
.|++++|..++++..+... +.| + ..+++.|+.+|...|++++|+.++++.. ..|+. .+++.|..
T Consensus 311 ~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~ 390 (433)
T 3qww_A 311 YKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGR 390 (433)
T ss_dssp TSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHH
Confidence 3566666666665544311 112 2 3567777777777888888777776643 33443 36889999
Q ss_pred HHHhcCCHHHHHHHHHHHHh-----cCCCCCchH
Q 007573 482 ACVINLNVELGELAAKKMRE-----LDPQNSAVY 510 (597)
Q Consensus 482 ~~~~~g~~~~a~~~~~~~~~-----~~p~~~~~~ 510 (597)
.|..+|++++|+.+++++++ ++|++|.+-
T Consensus 391 ~~~~qg~~~eA~~~~~~Al~i~~~~lG~~Hp~~~ 424 (433)
T 3qww_A 391 LYMGLENKAAGEKALKKAIAIMEVAHGKDHPYIS 424 (433)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHH
T ss_pred HHHhccCHHHHHHHHHHHHHHHHHHcCCCChHHH
Confidence 99999999999999999986 478776543
No 221
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=97.13 E-value=0.003 Score=62.37 Aligned_cols=97 Identities=8% Similarity=-0.077 Sum_probs=64.1
Q ss_pred HhccCcHHHHHHHHHHhHHhc--CCCCC----hHHHHHHHHHHhhcCCHHHHHHHHhhCC---------CCCCH-HHHHH
Q 007573 415 CGHAGKVNESMDLFELMVKVY--GIIPS----SEHYTCLVDILSRAGQLEKAWQITQGMP---------FEADT-GVWGS 478 (597)
Q Consensus 415 ~~~~g~~~~a~~~~~~~~~~~--~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~---------~~p~~-~~~~~ 478 (597)
+.+.|++++|...+++..... -+.|+ ..+++.|+.+|...|++++|+.++++.. ..|+. .+++.
T Consensus 297 ~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l~n 376 (429)
T 3qwp_A 297 LKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQVMK 376 (429)
T ss_dssp HHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHH
T ss_pred HHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHHHH
Confidence 344556666666666554321 11122 3456667777777777777777776543 23443 36888
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHh-----cCCCCCchHH
Q 007573 479 LLAACVINLNVELGELAAKKMRE-----LDPQNSAVYV 511 (597)
Q Consensus 479 l~~~~~~~g~~~~a~~~~~~~~~-----~~p~~~~~~~ 511 (597)
|...|..+|++++|+.+++++++ ++|++|.+-.
T Consensus 377 La~~~~~~g~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~ 414 (429)
T 3qwp_A 377 VGKLQLHQGMFPQAMKNLRLAFDIMRVTHGREHSLIED 414 (429)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHH
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChHHHH
Confidence 89999999999999999999986 4788766543
No 222
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=97.05 E-value=0.066 Score=41.66 Aligned_cols=141 Identities=11% Similarity=0.086 Sum_probs=101.4
Q ss_pred HHHcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHH
Q 007573 380 FAQHGHYEKALIFFSQMGLNGFDPDGITFLSLLSACGHAGKVNESMDLFELMVKVYGIIPSSEHYTCLVDILSRAGQLEK 459 (597)
Q Consensus 380 ~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~ 459 (597)
+.-.|..++..++..+... ..+..-|+.++--....-+-+-..++++.+-+.+. ...+|++..
T Consensus 17 ~ildG~v~qGveii~k~~~---ssni~E~NW~ICNiiD~a~C~y~v~vLd~IGkiFD--------------is~C~NlKr 79 (172)
T 1wy6_A 17 FLLDGYIDEGVKIVLEITK---SSTKSEYNWFICNLLESIDCRYMFQVLDKIGSYFD--------------LDKCQNLKS 79 (172)
T ss_dssp HHHTTCHHHHHHHHHHHHH---HSCHHHHTHHHHHHHHHCCHHHHHHHHHHHGGGSC--------------GGGCSCTHH
T ss_pred HHHhhhHHHHHHHHHHHcC---CCCccccceeeeecchhhchhHHHHHHHHHhhhcC--------------cHhhhcHHH
Confidence 3446888888888888775 23455566666655555566666666666644322 234555555
Q ss_pred HHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCcHHHHHHHHHHHhCCCc
Q 007573 460 AWQITQGMPFEADTGVWGSLLAACVINLNVELGELAAKKMRELDPQNSAVYVMLSNLYAAAGMWRDVTRVRLLMKEQGVT 539 (597)
Q Consensus 460 A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 539 (597)
....+-.+. .+......-+.....+|.-++-.+++..++..++.+|..+..++.+|.+.|+..+|.+++++.-++|++
T Consensus 80 Vi~C~~~~n--~~se~vd~ALd~lv~~~KkDqLdki~~~~l~n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG~k 157 (172)
T 1wy6_A 80 VVECGVINN--TLNEHVNKALDILVIQGKRDKLEEIGREILKNNEVSASILVAIANALRRVGDERDATTLLIEACKKGEK 157 (172)
T ss_dssp HHHHHHHTT--CCCHHHHHHHHHHHHTTCHHHHHHHHHHHC--CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHhc--chHHHHHHHHHHHHHhccHhHHHHHHHHHhccCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhhhH
Confidence 555555543 355566777788889999999999999987777777899999999999999999999999999999974
No 223
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=97.01 E-value=0.0091 Score=56.45 Aligned_cols=133 Identities=14% Similarity=0.126 Sum_probs=93.0
Q ss_pred CCChHHHHHHHHHHh--cc---CcHHHHHHHHHHhHHhcCCCCC-hHHHHHHHHHHhh---cC-----C---HHHHHHHH
Q 007573 402 DPDGITFLSLLSACG--HA---GKVNESMDLFELMVKVYGIIPS-SEHYTCLVDILSR---AG-----Q---LEKAWQIT 464 (597)
Q Consensus 402 ~p~~~~~~~ll~~~~--~~---g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~---~g-----~---~~~A~~~~ 464 (597)
+.+...|...+.+.. .. ....+|..+|+++.+. .|+ ...|..+..+|.- .+ . ...|.+..
T Consensus 191 p~~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~l---DP~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a~ 267 (372)
T 3ly7_A 191 PHRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQS---SPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNI 267 (372)
T ss_dssp CSSGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHHH
Confidence 555666766665543 22 3468899999998864 566 4555544444421 11 1 11222222
Q ss_pred hhCC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCcHHHHHHHHHHHhCCC
Q 007573 465 QGMP-FEADTGVWGSLLAACVINLNVELGELAAKKMRELDPQNSAVYVMLSNLYAAAGMWRDVTRVRLLMKEQGV 538 (597)
Q Consensus 465 ~~~~-~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 538 (597)
..+. .+.++.++..+...+...|++++|+..++++++++|. ...|..+++++.-.|++++|.+.+++....++
T Consensus 268 ~a~~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln~s-~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~P 341 (372)
T 3ly7_A 268 VTLPELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLEMS-WLNYVLLGKVYEMKGMNREAADAYLTAFNLRP 341 (372)
T ss_dssp HTCGGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSC
T ss_pred HhcccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC
Confidence 2333 3456778888888787889999999999999999964 56678999999999999999999999887654
No 224
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=96.83 E-value=0.0041 Score=56.25 Aligned_cols=87 Identities=7% Similarity=-0.029 Sum_probs=69.0
Q ss_pred HHHHHHHHhhCC-CCCC---HHHHHHHHHHHHh-----cCCHHHHHHHHHHHHhcCCCC-CchHHHHHHHHHhc-CCcHH
Q 007573 457 LEKAWQITQGMP-FEAD---TGVWGSLLAACVI-----NLNVELGELAAKKMRELDPQN-SAVYVMLSNLYAAA-GMWRD 525 (597)
Q Consensus 457 ~~~A~~~~~~~~-~~p~---~~~~~~l~~~~~~-----~g~~~~a~~~~~~~~~~~p~~-~~~~~~l~~~~~~~-g~~~~ 525 (597)
..+|...+++.. +.|+ ...|..|+..|.. -|+.++|.+.|+++++++|+. ..++...++.++.. |+.++
T Consensus 179 l~~A~a~lerAleLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~~ 258 (301)
T 3u64_A 179 VHAAVMMLERACDLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNRAG 258 (301)
T ss_dssp HHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHHH
T ss_pred HHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHHH
Confidence 345566665544 5676 4578888888887 499999999999999999975 99999999999884 99999
Q ss_pred HHHHHHHHHhCCCccCCC
Q 007573 526 VTRVRLLMKEQGVTKQCA 543 (597)
Q Consensus 526 A~~~~~~~~~~~~~~~~~ 543 (597)
|.+.+++......+..|+
T Consensus 259 a~~~L~kAL~a~p~~~P~ 276 (301)
T 3u64_A 259 FDEALDRALAIDPESVPH 276 (301)
T ss_dssp HHHHHHHHHHCCGGGCSS
T ss_pred HHHHHHHHHcCCCCCCCC
Confidence 999999998877654444
No 225
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=96.61 E-value=0.01 Score=45.25 Aligned_cols=73 Identities=18% Similarity=0.062 Sum_probs=51.8
Q ss_pred HHHHHHHHHHhhcCCHHHHHHHHhhCC---------CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHH
Q 007573 442 EHYTCLVDILSRAGQLEKAWQITQGMP---------FEADTGVWGSLLAACVINLNVELGELAAKKMRELDPQNSAVYVM 512 (597)
Q Consensus 442 ~~~~~l~~~~~~~g~~~~A~~~~~~~~---------~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~ 512 (597)
.-+-.|+..+.+.|+++.|...+++.. ..+...++..|..++.+.|+++.|...++++++++|+++.+...
T Consensus 6 ~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~n 85 (104)
T 2v5f_A 6 EDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRANGN 85 (104)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred HHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHhh
Confidence 334455555666666666665555432 12345678889999999999999999999999999998776555
Q ss_pred HH
Q 007573 513 LS 514 (597)
Q Consensus 513 l~ 514 (597)
+.
T Consensus 86 ~~ 87 (104)
T 2v5f_A 86 LK 87 (104)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 226
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=96.60 E-value=0.034 Score=60.31 Aligned_cols=96 Identities=14% Similarity=0.103 Sum_probs=49.2
Q ss_pred hCCChhHHHH-HHhhCCCCCcchHHHHHHHHHcCCChHHHHHHHccCCCCChhhHHHHHHHHHcCCChHHHHHHHccCCC
Q 007573 93 QNGFLQESKN-LFQSMPVKNIVSWNCMIAGCIDNDRIDDAFDYFQAMPERNTATYNAMISGFLKHGRLEEATRLFEQMPR 171 (597)
Q Consensus 93 ~~g~~~~A~~-~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 171 (597)
..+++++|.+ ++..+. +......++..+.+.|..++|.++.+. + ..-.......|+++.|.++.+.+
T Consensus 611 ~~~~~~~a~~~~l~~i~--~~~~~~~~~~~l~~~~~~~~a~~~~~~-----~---~~~f~~~l~~~~~~~A~~~~~~~-- 678 (814)
T 3mkq_A 611 LRGEIEEAIENVLPNVE--GKDSLTKIARFLEGQEYYEEALNISPD-----Q---DQKFELALKVGQLTLARDLLTDE-- 678 (814)
T ss_dssp HTTCHHHHHHHTGGGCC--CHHHHHHHHHHHHHTTCHHHHHHHCCC-----H---HHHHHHHHHHTCHHHHHHHHTTC--
T ss_pred HhCCHHHHHHHHHhcCC--chHHHHHHHHHHHhCCChHHheecCCC-----c---chheehhhhcCCHHHHHHHHHhh--
Confidence 4555555555 332222 011224455555555555555554421 1 11123344556666666666555
Q ss_pred CCchhHHHHHHHHHhCCChhHHHHHHHhc
Q 007573 172 RNVISYTAMLDGFMKKGEVDKARALSDYM 200 (597)
Q Consensus 172 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m 200 (597)
.+...|..+...+.+.|+++.|.+.|..+
T Consensus 679 ~~~~~W~~la~~al~~~~~~~A~~~y~~~ 707 (814)
T 3mkq_A 679 SAEMKWRALGDASLQRFNFKLAIEAFTNA 707 (814)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred CcHhHHHHHHHHHHHcCCHHHHHHHHHHc
Confidence 23456666666666666666666665544
No 227
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=96.54 E-value=0.019 Score=42.57 Aligned_cols=70 Identities=6% Similarity=-0.001 Sum_probs=54.2
Q ss_pred CCChHHHHHHHHHHhhcCC---HHHHHHHHhhCC-CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCC
Q 007573 438 IPSSEHYTCLVDILSRAGQ---LEKAWQITQGMP-FEA-DTGVWGSLLAACVINLNVELGELAAKKMRELDPQNS 507 (597)
Q Consensus 438 ~p~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~-~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~ 507 (597)
+.++..+..+..++...++ .++|..++++.. ..| +...+..++..+...|++++|+..++++++.+|+++
T Consensus 3 p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~~~ 77 (93)
T 3bee_A 3 AVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDPNL 77 (93)
T ss_dssp CCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCTTC
T ss_pred CCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCc
Confidence 3456777777777765444 688888888765 455 566788888889999999999999999999999843
No 228
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=96.45 E-value=0.026 Score=42.87 Aligned_cols=66 Identities=12% Similarity=-0.092 Sum_probs=55.9
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC-------CCCCchHHHHHHHHHhcCCcHHHHHHHHHHHhCC
Q 007573 472 DTGVWGSLLAACVINLNVELGELAAKKMRELD-------PQNSAVYVMLSNLYAAAGMWRDVTRVRLLMKEQG 537 (597)
Q Consensus 472 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~-------p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 537 (597)
+..-...++..+...|+++.|+..++++++.. +..+.++..++.+|.+.|++++|...++++.+..
T Consensus 4 sa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~ 76 (104)
T 2v5f_A 4 TAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELD 76 (104)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred CHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcC
Confidence 45556788899999999999999999999753 2336778999999999999999999999987643
No 229
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=96.44 E-value=0.14 Score=44.27 Aligned_cols=152 Identities=13% Similarity=0.069 Sum_probs=90.7
Q ss_pred hhhHHHhhcCCCcchHHHHHHHHHhcCChHHHHHHHhhcCCCCcchHHHHHHHHHhCCChhHHHHHHhhCCCCCcchHHH
Q 007573 38 SNCLIRLFSTQYVFVNNAKISALSRAGKISAARQLFDQMTTKDVITWNAIITGYWQNGFLQESKNLFQSMPVKNIVSWNC 117 (597)
Q Consensus 38 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 117 (597)
....+..+..+|..+-...+..+++.|..+....+.+.+..++...-...+.++...|..+..-.+.+.+..++...-..
T Consensus 16 ~~~~i~~L~~~~~~vr~~A~~~L~~~~~~~~~~~L~~~l~~~~~~vr~~a~~~L~~~~~~~~~~~L~~~l~d~~~~vr~~ 95 (201)
T 3ltj_A 16 VEMYIKNLQDDSYYVRRAAAYALGKIGDERAVEPLIKALKDEDAWVRRAAADALGQIGDERAVEPLIKALKDEDGWVRQS 95 (201)
T ss_dssp HHHHHHHTTCSCHHHHHHHHHHHHHHCCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCCGGGHHHHHHHTTCSSHHHHHH
T ss_pred hHHHHHHhcCCCHHHHHHHHHHHHhcCChhHHHHHHHHHcCCCHHHHHHHHHHHHhhCCHHHHHHHHHHHcCCCHHHHHH
Confidence 33455555567777777788888888876666666666666776666666667776666554444445455556666666
Q ss_pred HHHHHHcCCChHHHHHHHccCCCCChhhHHHHHHHHHcCCChHHHHHHHccCCCCCchhHHHHHHHHHhCCC
Q 007573 118 MIAGCIDNDRIDDAFDYFQAMPERNTATYNAMISGFLKHGRLEEATRLFEQMPRRNVISYTAMLDGFMKKGE 189 (597)
Q Consensus 118 ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~ 189 (597)
.+.++.+.++.+....+.+.+..++..+-...+.++.+.|+.+....+.+-+..++..+-...+.++.+.|.
T Consensus 96 a~~aL~~~~~~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~~~~~~L~~~l~d~~~~vr~~A~~aL~~~~~ 167 (201)
T 3ltj_A 96 AAVALGQIGDERAVEPLIKALKDEDWFVRIAAAFALGEIGDERAVEPLIKALKDEDGWVRQSAADALGEIGG 167 (201)
T ss_dssp HHHHHHHHCCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHTCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCS
T ss_pred HHHHHHHhCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc
Confidence 666666666554444444444456666666666666666654433333333444555555555555555554
No 230
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=96.39 E-value=0.021 Score=44.48 Aligned_cols=87 Identities=11% Similarity=-0.043 Sum_probs=45.7
Q ss_pred cHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHH---HHHHHhhCC-CC-C--CHHHHHHHHHHHHhcCCHHHH
Q 007573 420 KVNESMDLFELMVKVYGIIPSSEHYTCLVDILSRAGQLEK---AWQITQGMP-FE-A--DTGVWGSLLAACVINLNVELG 492 (597)
Q Consensus 420 ~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~---A~~~~~~~~-~~-p--~~~~~~~l~~~~~~~g~~~~a 492 (597)
.+..+.+-|...... +. |+..+--.+..++.+.....+ ++.+++.+. .. | .....-.|.-++.+.|++++|
T Consensus 16 ~l~~~~~~y~~e~~~-~~-~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A 93 (126)
T 1nzn_A 16 DLLKFEKKFQSEKAA-GS-VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKA 93 (126)
T ss_dssp HHHHHHHHHHHHHHH-SC-CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHhcc-CC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHH
Confidence 344445555444332 22 555555556666666665544 555555544 11 2 122334444556666666666
Q ss_pred HHHHHHHHhcCCCCCc
Q 007573 493 ELAAKKMRELDPQNSA 508 (597)
Q Consensus 493 ~~~~~~~~~~~p~~~~ 508 (597)
.+.++.+++.+|++..
T Consensus 94 ~~~~~~lL~~eP~n~Q 109 (126)
T 1nzn_A 94 LKYVRGLLQTEPQNNQ 109 (126)
T ss_dssp HHHHHHHHHHCTTCHH
T ss_pred HHHHHHHHHhCCCCHH
Confidence 6666666666666544
No 231
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=96.39 E-value=0.014 Score=47.34 Aligned_cols=82 Identities=17% Similarity=0.084 Sum_probs=39.3
Q ss_pred HHHHHHHHHHHHCCCCCChHHHHHHHHHHhccC---cHHHHHHHHHHhHHhcCCCC--ChHHHHHHHHHHhhcCCHHHHH
Q 007573 387 EKALIFFSQMGLNGFDPDGITFLSLLSACGHAG---KVNESMDLFELMVKVYGIIP--SSEHYTCLVDILSRAGQLEKAW 461 (597)
Q Consensus 387 ~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g---~~~~a~~~~~~~~~~~~~~p--~~~~~~~l~~~~~~~g~~~~A~ 461 (597)
..+.+-|.+..+.| .++..+.-.+..++.+++ +.+++..+++...+. . .| ..+.+-.|.-+|.+.|++++|.
T Consensus 15 ~~~~~~y~~e~~~~-~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~-~-~p~~~rd~lY~LAv~~~kl~~Y~~A~ 91 (152)
T 1pc2_A 15 LKFEKKFQSEKAAG-SVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPK-G-SKEEQRDYVFYLAVGNYRLKEYEKAL 91 (152)
T ss_dssp HHHHHHHHHHHHTT-CCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHH-S-CHHHHHHHHHHHHHHHHHTSCHHHHH
T ss_pred HHHHHHHHHHHccC-CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhc-C-CccchHHHHHHHHHHHHHccCHHHHH
Confidence 34444444444433 244444444555555554 444555555555543 1 22 1333444445555555555555
Q ss_pred HHHhhCC-CCC
Q 007573 462 QITQGMP-FEA 471 (597)
Q Consensus 462 ~~~~~~~-~~p 471 (597)
++++.+. .+|
T Consensus 92 ~y~~~lL~ieP 102 (152)
T 1pc2_A 92 KYVRGLLQTEP 102 (152)
T ss_dssp HHHHHHHHHCT
T ss_pred HHHHHHHhcCC
Confidence 5555543 344
No 232
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=96.25 E-value=0.37 Score=40.09 Aligned_cols=105 Identities=10% Similarity=0.011 Sum_probs=66.3
Q ss_pred HHHHHhcCCHHHHHHHHhhcCCCChhHHHHHHHHHHHcCChhHHHHHHHHhHHCCCCCCHHHHHHHHHHHhccchhHHHH
Q 007573 245 ITGFCKVGMLENARLLFERIQPKDCVSFNAMIAGYAQNGVAEEALRLFSGMIKMDMQPDDATLVSVFTACSALQLLNEGR 324 (597)
Q Consensus 245 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~ 324 (597)
.....++|+++.|.++.+.+ .+...|..|......+|+++-|.+.|.+... +..+.-.|...|+.+...
T Consensus 12 F~LAL~lg~l~~A~e~a~~l--~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D---------~~~L~~Ly~~tg~~e~L~ 80 (177)
T 3mkq_B 12 FDLALEYGNLDAALDEAKKL--NDSITWERLIQEALAQGNASLAEMIYQTQHS---------FDKLSFLYLVTGDVNKLS 80 (177)
T ss_dssp HHHHHHTTCHHHHHHHHHHH--CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC---------HHHHHHHHHHHTCHHHHH
T ss_pred HHHHHhcCCHHHHHHHHHHh--CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC---------HHHHHHHHHHhCCHHHHH
Confidence 34556778888888887766 4567888888888888888888888877653 223333444456665555
Q ss_pred HHHHHHHHhCCCCcccHHHHHHHHHHhcCCHHHHHHHHhccC
Q 007573 325 QSHVLVIRNGFEANVSVCNAVITMYSRCGGILDSELAFRQIH 366 (597)
Q Consensus 325 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 366 (597)
.+-+.....| -++.....+.-.|+++++.++|.+..
T Consensus 81 kla~iA~~~g------~~n~af~~~l~lGdv~~~i~lL~~~~ 116 (177)
T 3mkq_B 81 KMQNIAQTRE------DFGSMLLNTFYNNSTKERSSIFAEGG 116 (177)
T ss_dssp HHHHHHHHTT------CHHHHHHHHHHHTCHHHHHHHHHHTT
T ss_pred HHHHHHHHCc------cHHHHHHHHHHcCCHHHHHHHHHHCC
Confidence 5544444444 23344444555566666666665443
No 233
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=96.06 E-value=0.33 Score=42.28 Aligned_cols=153 Identities=12% Similarity=0.069 Sum_probs=79.9
Q ss_pred chhhHHHhhcCCCcchHHHHHHHHHhcCChHHHHHHHhhcCCCCcchHHHHHHHHHhCCChhHHHHHHhhCCCCCcchHH
Q 007573 37 SSNCLIRLFSTQYVFVNNAKISALSRAGKISAARQLFDQMTTKDVITWNAIITGYWQNGFLQESKNLFQSMPVKNIVSWN 116 (597)
Q Consensus 37 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 116 (597)
........+..+|..+-...+..+++.|..+....+.+.+..++...-...+.++...|..+..-.+.+.+..+|...-.
T Consensus 20 ~~~~L~~~L~~~~~~vR~~A~~~L~~~~~~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~~~~~~~~L~~~l~~~~~~vr~ 99 (211)
T 3ltm_A 20 KVEMYIKNLQDDSYYVRRAAAYALGKIGDERAVEPLIKALKDEDAWVRRAAADALGQIGDERAVEPLIKALKDEDGWVRQ 99 (211)
T ss_dssp GHHHHHHHTTCSSHHHHHHHHHHHHHHCCGGGHHHHHHHTTCSCHHHHHHHHHHHHHHCCGGGHHHHHHHTTCSSHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHhCCccHHHHHHHHHcCCCHHHHHHHHHHHHhhCCHHHHHHHHHHHcCCCHHHHH
Confidence 33444444555666666666777777776555555555555566555555566666666544443344444445555555
Q ss_pred HHHHHHHcCCChHHHHHHHccCCCCChhhHHHHHHHHHcCCChHHHHHHHccCCCCCchhHHHHHHHHHhCCC
Q 007573 117 CMIAGCIDNDRIDDAFDYFQAMPERNTATYNAMISGFLKHGRLEEATRLFEQMPRRNVISYTAMLDGFMKKGE 189 (597)
Q Consensus 117 ~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~ 189 (597)
..+.++.+.++.+....+.+.+..++..+-...+.++.+.|+.+....+.+-+..++..+-...+.++.+.+.
T Consensus 100 ~a~~aL~~~~~~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~ 172 (211)
T 3ltm_A 100 SAAVALGQIGDERAVEPLIKALKDEDWFVRIAAAFALGEIGDERAVEPLIKALKDEDGWVRQSAADALGEIGG 172 (211)
T ss_dssp HHHHHHHHHCCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCS
T ss_pred HHHHHHHHhCcHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc
Confidence 5555555555543333333333455555555555555555554333333333333444444444555544444
No 234
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=95.81 E-value=0.54 Score=40.86 Aligned_cols=121 Identities=7% Similarity=-0.006 Sum_probs=52.8
Q ss_pred HHHHhhcCCCCcchHHHHHHHHHhCCChhHHHHHHhhCCCCCcchHHHHHHHHHcCCChHHHHHHHccCCCCChhhHHHH
Q 007573 70 RQLFDQMTTKDVITWNAIITGYWQNGFLQESKNLFQSMPVKNIVSWNCMIAGCIDNDRIDDAFDYFQAMPERNTATYNAM 149 (597)
Q Consensus 70 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l 149 (597)
..+.+.+..++...-...+..+.+.|..+..-.+.+.+..+|...-...+.++...++.+....+.+.+..+++.+-...
T Consensus 22 ~~L~~~L~~~~~~vR~~A~~~L~~~~~~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~~~~~~~~L~~~l~~~~~~vr~~a 101 (211)
T 3ltm_A 22 EMYIKNLQDDSYYVRRAAAYALGKIGDERAVEPLIKALKDEDAWVRRAAADALGQIGDERAVEPLIKALKDEDGWVRQSA 101 (211)
T ss_dssp HHHHHHTTCSSHHHHHHHHHHHHHHCCGGGHHHHHHHTTCSCHHHHHHHHHHHHHHCCGGGHHHHHHHTTCSSHHHHHHH
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHhCCccHHHHHHHHHcCCCHHHHHHHHHHHHhhCCHHHHHHHHHHHcCCCHHHHHHH
Confidence 33333344445444444455555555433333333333344444444444555544443333333333334454444445
Q ss_pred HHHHHcCCChHHHHHHHccCCCCCchhHHHHHHHHHhCCCh
Q 007573 150 ISGFLKHGRLEEATRLFEQMPRRNVISYTAMLDGFMKKGEV 190 (597)
Q Consensus 150 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~ 190 (597)
+.++.+.|+.+....+.+-+..++..+-...+.++.+.|..
T Consensus 102 ~~aL~~~~~~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~ 142 (211)
T 3ltm_A 102 AVALGQIGDERAVEPLIKALKDEDWFVRIAAAFALGEIGDE 142 (211)
T ss_dssp HHHHHHHCCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCCG
T ss_pred HHHHHHhCcHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCH
Confidence 55555544433333333333334444444444444444443
No 235
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=95.61 E-value=0.88 Score=39.08 Aligned_cols=116 Identities=7% Similarity=-0.009 Sum_probs=52.8
Q ss_pred hcCCCCcchHHHHHHHHHhCCChhHHHHHHhhCCCCCcchHHHHHHHHHcCCChHHHHHHHccCCCCChhhHHHHHHHHH
Q 007573 75 QMTTKDVITWNAIITGYWQNGFLQESKNLFQSMPVKNIVSWNCMIAGCIDNDRIDDAFDYFQAMPERNTATYNAMISGFL 154 (597)
Q Consensus 75 ~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~ 154 (597)
.+..+|...-...+.++.+.|..+..-.+.+.+..++...-...+.++...++.+....+.+.+..+++.+-...+.++.
T Consensus 22 ~L~~~~~~vr~~A~~~L~~~~~~~~~~~L~~~l~~~~~~vr~~a~~~L~~~~~~~~~~~L~~~l~d~~~~vr~~a~~aL~ 101 (201)
T 3ltj_A 22 NLQDDSYYVRRAAAYALGKIGDERAVEPLIKALKDEDAWVRRAAADALGQIGDERAVEPLIKALKDEDGWVRQSAAVALG 101 (201)
T ss_dssp HTTCSCHHHHHHHHHHHHHHCCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCCGGGHHHHHHHTTCSSHHHHHHHHHHHH
T ss_pred HhcCCCHHHHHHHHHHHHhcCChhHHHHHHHHHcCCCHHHHHHHHHHHHhhCCHHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 33344444444445555555544333334444444454444444555554444433333333344455555555555555
Q ss_pred cCCChHHHHHHHccCCCCCchhHHHHHHHHHhCCCh
Q 007573 155 KHGRLEEATRLFEQMPRRNVISYTAMLDGFMKKGEV 190 (597)
Q Consensus 155 ~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~ 190 (597)
+.|+.+....+.+-+..++..+-...+.++.+.|+.
T Consensus 102 ~~~~~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~ 137 (201)
T 3ltj_A 102 QIGDERAVEPLIKALKDEDWFVRIAAAFALGEIGDE 137 (201)
T ss_dssp HHCCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHTCG
T ss_pred HhCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCH
Confidence 555443333333333344444444444444444443
No 236
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=95.57 E-value=0.54 Score=37.22 Aligned_cols=70 Identities=9% Similarity=-0.028 Sum_probs=31.7
Q ss_pred CCChHHHHHHHHHHhhcCCHH---HHHHHHhhCC-CCC-C-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCC
Q 007573 438 IPSSEHYTCLVDILSRAGQLE---KAWQITQGMP-FEA-D-TGVWGSLLAACVINLNVELGELAAKKMRELDPQNS 507 (597)
Q Consensus 438 ~p~~~~~~~l~~~~~~~g~~~---~A~~~~~~~~-~~p-~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~ 507 (597)
.|+..+--.+..++.+....+ ++..+++.+. ..| + ....--|.-++.+.|++++|.++.+.+++.+|+|.
T Consensus 36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~n~ 111 (144)
T 1y8m_A 36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNK 111 (144)
T ss_dssp TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCCCCH
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcH
Confidence 344444444555555554333 3333443332 222 1 22333344445555555555555555555555543
No 237
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=95.30 E-value=0.17 Score=39.31 Aligned_cols=84 Identities=15% Similarity=0.022 Sum_probs=42.5
Q ss_pred HHHHHHHHHHHHHCCCCCChHHHHHHHHHHhccCcHHH---HHHHHHHhHHhcCCCC--ChHHHHHHHHHHhhcCCHHHH
Q 007573 386 YEKALIFFSQMGLNGFDPDGITFLSLLSACGHAGKVNE---SMDLFELMVKVYGIIP--SSEHYTCLVDILSRAGQLEKA 460 (597)
Q Consensus 386 ~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~---a~~~~~~~~~~~~~~p--~~~~~~~l~~~~~~~g~~~~A 460 (597)
...+.+-|.+....| .|+..+--.+..++.++..... ++.+++.+.+. -.| .....-.|.-++.+.|++++|
T Consensus 17 l~~~~~~y~~e~~~~-~~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~--~~p~~~Rd~lY~LAvg~yklg~Y~~A 93 (126)
T 1nzn_A 17 LLKFEKKFQSEKAAG-SVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPK--GSKEEQRDYVFYLAVGNYRLKEYEKA 93 (126)
T ss_dssp HHHHHHHHHHHHHHS-CCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTT--SCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHhccC-CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHHhhhHHHH
Confidence 344444444444433 2555554555555655554444 56666655442 112 233334455556666666666
Q ss_pred HHHHhhCC-CCCC
Q 007573 461 WQITQGMP-FEAD 472 (597)
Q Consensus 461 ~~~~~~~~-~~p~ 472 (597)
.+.++.+. .+|+
T Consensus 94 ~~~~~~lL~~eP~ 106 (126)
T 1nzn_A 94 LKYVRGLLQTEPQ 106 (126)
T ss_dssp HHHHHHHHHHCTT
T ss_pred HHHHHHHHHhCCC
Confidence 66666554 4443
No 238
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=94.97 E-value=0.15 Score=39.88 Aligned_cols=65 Identities=11% Similarity=-0.043 Sum_probs=40.3
Q ss_pred CCHHHHHHHHHHHHhcCC---HHHHHHHHHHHHhcCCCC-CchHHHHHHHHHhcCCcHHHHHHHHHHHh
Q 007573 471 ADTGVWGSLLAACVINLN---VELGELAAKKMRELDPQN-SAVYVMLSNLYAAAGMWRDVTRVRLLMKE 535 (597)
Q Consensus 471 p~~~~~~~l~~~~~~~g~---~~~a~~~~~~~~~~~p~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 535 (597)
|+..+--.+.+++.+..+ ..+++.+++.+.+.+|.. ...+..|+-++.+.|++++|.++.+.+.+
T Consensus 38 vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~ 106 (134)
T 3o48_A 38 ATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFE 106 (134)
T ss_dssp SCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHT
T ss_pred CChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 444444445555554443 345677777777666643 55566677777777777777777776664
No 239
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=94.83 E-value=0.064 Score=48.56 Aligned_cols=106 Identities=16% Similarity=0.171 Sum_probs=70.8
Q ss_pred HHHHHHHHHHhHHhcCCCCC---hHHHHHHHHHHhhc-----CCHHHHHHHHhhCC-CCCC--HHHHHHHHHHHHh-cCC
Q 007573 421 VNESMDLFELMVKVYGIIPS---SEHYTCLVDILSRA-----GQLEKAWQITQGMP-FEAD--TGVWGSLLAACVI-NLN 488 (597)
Q Consensus 421 ~~~a~~~~~~~~~~~~~~p~---~~~~~~l~~~~~~~-----g~~~~A~~~~~~~~-~~p~--~~~~~~l~~~~~~-~g~ 488 (597)
...|...+++.. .+.|+ ...|..|...|... |+.++|.+.|++.. +.|+ ..++......++. .|+
T Consensus 179 l~~A~a~lerAl---eLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd 255 (301)
T 3u64_A 179 VHAAVMMLERAC---DLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNN 255 (301)
T ss_dssp HHHHHHHHHHHH---HHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTC
T ss_pred HHHHHHHHHHHH---HhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCC
Confidence 445555555555 34555 45677777778774 88888888888765 5663 6677777777766 489
Q ss_pred HHHHHHHHHHHHhcCCCC-CchHHHHHHHHHhcCCcHHHHHHHHHHHh
Q 007573 489 VELGELAAKKMRELDPQN-SAVYVMLSNLYAAAGMWRDVTRVRLLMKE 535 (597)
Q Consensus 489 ~~~a~~~~~~~~~~~p~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 535 (597)
.+++.+.+++++..+|.. |. +.+...+.-++|..+++++.+
T Consensus 256 ~~~a~~~L~kAL~a~p~~~P~------~~lan~~~q~eA~~LL~~~~d 297 (301)
T 3u64_A 256 RAGFDEALDRALAIDPESVPH------NKLLVILSQKRARWLKAHVQD 297 (301)
T ss_dssp HHHHHHHHHHHHHCCGGGCSS------CHHHHHHHHHHHHHHHHTHHH
T ss_pred HHHHHHHHHHHHcCCCCCCCC------hhHHHHHHHHHHHHHHHHhHH
Confidence 999999999999988873 32 122333445667776665543
No 240
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=94.80 E-value=0.96 Score=37.58 Aligned_cols=128 Identities=14% Similarity=0.095 Sum_probs=74.1
Q ss_pred HHHHcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHH
Q 007573 379 AFAQHGHYEKALIFFSQMGLNGFDPDGITFLSLLSACGHAGKVNESMDLFELMVKVYGIIPSSEHYTCLVDILSRAGQLE 458 (597)
Q Consensus 379 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~ 458 (597)
.....|+++.|.++.+.+ .+...|..+.......|+++-|.+.|..... +..+.-.|.-.|+.+
T Consensus 14 LAL~lg~l~~A~e~a~~l------~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D----------~~~L~~Ly~~tg~~e 77 (177)
T 3mkq_B 14 LALEYGNLDAALDEAKKL------NDSITWERLIQEALAQGNASLAEMIYQTQHS----------FDKLSFLYLVTGDVN 77 (177)
T ss_dssp HHHHTTCHHHHHHHHHHH------CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC----------HHHHHHHHHHHTCHH
T ss_pred HHHhcCCHHHHHHHHHHh------CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC----------HHHHHHHHHHhCCHH
Confidence 345577888887776654 4566777777777778888888877776531 345555666677766
Q ss_pred HHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCcHHHHHHHHHH
Q 007573 459 KAWQITQGMPFEADTGVWGSLLAACVINLNVELGELAAKKMRELDPQNSAVYVMLSNLYAAAGMWRDVTRVRLLM 533 (597)
Q Consensus 459 ~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 533 (597)
.-.++-+....+-+ ++.-...+...|+++++++++.+.-+ +....-.-...|-.+.|.++.+.+
T Consensus 78 ~L~kla~iA~~~g~---~n~af~~~l~lGdv~~~i~lL~~~~r--------~~eA~~~A~t~g~~~~a~~~~~~~ 141 (177)
T 3mkq_B 78 KLSKMQNIAQTRED---FGSMLLNTFYNNSTKERSSIFAEGGS--------LPLAYAVAKANGDEAAASAFLEQA 141 (177)
T ss_dssp HHHHHHHHHHHTTC---HHHHHHHHHHHTCHHHHHHHHHHTTC--------HHHHHHHHHHTTCHHHHHHHHHHT
T ss_pred HHHHHHHHHHHCcc---HHHHHHHHHHcCCHHHHHHHHHHCCC--------hHHHHHHHHHcCcHHHHHHHHHHh
Confidence 65555433221111 33334455667788888777755321 111111222245556666666554
No 241
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=94.77 E-value=0.13 Score=40.98 Aligned_cols=57 Identities=14% Similarity=-0.086 Sum_probs=40.4
Q ss_pred cCCHHHHHHHHhhCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchH
Q 007573 454 AGQLEKAWQITQGMP--FEADTGVWGSLLAACVINLNVELGELAAKKMRELDPQNSAVY 510 (597)
Q Consensus 454 ~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~ 510 (597)
.++.++|.++|+.+. -+.=..+|......-.++|++..|.+++.+++.+.|.+...+
T Consensus 73 i~D~d~aR~vy~~a~~~hKkFAKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~~~~l 131 (161)
T 4h7y_A 73 IQEPDDARDYFQMARANCKKFAFVHISFAQFELSQGNVKKSKQLLQKAVERGAVPLEML 131 (161)
T ss_dssp HHCGGGCHHHHHHHHHHCTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBCHHHH
T ss_pred hcCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCcHHHH
Confidence 356667777776653 111256777777777788999999999999999888865543
No 242
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=94.72 E-value=1.2 Score=34.87 Aligned_cols=82 Identities=10% Similarity=-0.010 Sum_probs=54.3
Q ss_pred CCHHHHHHHHhccCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHhccCcHHHHHHHHHHhH
Q 007573 353 GGILDSELAFRQIHSPNLVSWNTIIAAFAQHGHYEKALIFFSQMGLNGFDPDGITFLSLLSACGHAGKVNESMDLFELMV 432 (597)
Q Consensus 353 g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~ 432 (597)
|++......+-.+. .+.......+..+...|+-++-.+++..+.. ..+|++.....+..||.+.|+..++.+++.++.
T Consensus 75 ~NlKrVi~C~~~~n-~~se~vd~ALd~lv~~~KkDqLdki~~~~l~-n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC 152 (172)
T 1wy6_A 75 QNLKSVVECGVINN-TLNEHVNKALDILVIQGKRDKLEEIGREILK-NNEVSASILVAIANALRRVGDERDATTLLIEAC 152 (172)
T ss_dssp SCTHHHHHHHHHTT-CCCHHHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred hcHHHHHHHHHHhc-chHHHHHHHHHHHHHhccHhHHHHHHHHHhc-cCCCChHHHHHHHHHHHHhcchhhHHHHHHHHH
Confidence 44444444433332 3344455566777788888888888887543 336777778888888888888888888888877
Q ss_pred HhcCC
Q 007573 433 KVYGI 437 (597)
Q Consensus 433 ~~~~~ 437 (597)
+. |+
T Consensus 153 ~k-G~ 156 (172)
T 1wy6_A 153 KK-GE 156 (172)
T ss_dssp HT-TC
T ss_pred Hh-hh
Confidence 65 54
No 243
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=94.39 E-value=0.19 Score=40.18 Aligned_cols=54 Identities=9% Similarity=-0.021 Sum_probs=45.3
Q ss_pred hcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCcHHHHHHHHHHHhCCC
Q 007573 485 INLNVELGELAAKKMRELDPQNSAVYVMLSNLYAAAGMWRDVTRVRLLMKEQGV 538 (597)
Q Consensus 485 ~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 538 (597)
..+|.++|.++|+.++++...-+.++...+..-.++|+.+.|.+++.+....+.
T Consensus 72 ei~D~d~aR~vy~~a~~~hKkFAKiwi~~AqFEiRqgnl~kARkILg~AiG~~~ 125 (161)
T 4h7y_A 72 AIQEPDDARDYFQMARANCKKFAFVHISFAQFELSQGNVKKSKQLLQKAVERGA 125 (161)
T ss_dssp HHHCGGGCHHHHHHHHHHCTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC
T ss_pred HhcCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCC
Confidence 447999999999999987444467777888888899999999999999988665
No 244
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=94.37 E-value=0.15 Score=53.39 Aligned_cols=55 Identities=11% Similarity=-0.058 Sum_probs=50.7
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCcHHHHHHHHHHH
Q 007573 480 LAACVINLNVELGELAAKKMRELDPQNSAVYVMLSNLYAAAGMWRDVTRVRLLMK 534 (597)
Q Consensus 480 ~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 534 (597)
...|...|+++.|+.+.+++...-|.+..+|..|+.+|...|+|+.|+-.+..+.
T Consensus 344 a~FLl~K~~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~l~d~e~ALLtLNScP 398 (754)
T 4gns_B 344 TNFLLNRGDYELALGVSNTSTELALDSFESWYNLARCHIKKEEYEKALFAINSMP 398 (754)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHSC
T ss_pred HHHHhccCcHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhccHHHHHHHHhcCC
Confidence 3457788999999999999999999999999999999999999999999998884
No 245
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=92.49 E-value=6 Score=35.85 Aligned_cols=20 Identities=5% Similarity=-0.142 Sum_probs=8.2
Q ss_pred CCCchhHHHHHHHHHhCCCh
Q 007573 171 RRNVISYTAMLDGFMKKGEV 190 (597)
Q Consensus 171 ~~~~~~~~~li~~~~~~g~~ 190 (597)
.++..+-...+.++.+.|+.
T Consensus 139 d~~~~vR~~a~~aL~~~~~~ 158 (280)
T 1oyz_A 139 DKSTNVRRATAFAISVINDK 158 (280)
T ss_dssp CSCHHHHHHHHHHHHTC---
T ss_pred CCCHHHHHHHHHHHHhcCCH
Confidence 34444444445555555443
No 246
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=92.14 E-value=3.1 Score=39.91 Aligned_cols=88 Identities=11% Similarity=-0.052 Sum_probs=53.9
Q ss_pred HHHHHHhhcCCHHHHHHHHhhCC---CCCC-----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC----CCC---CchH
Q 007573 446 CLVDILSRAGQLEKAWQITQGMP---FEAD-----TGVWGSLLAACVINLNVELGELAAKKMRELD----PQN---SAVY 510 (597)
Q Consensus 446 ~l~~~~~~~g~~~~A~~~~~~~~---~~p~-----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~----p~~---~~~~ 510 (597)
.++..|...|++.+|.+++.++. .+.| ..++..-+..|...|++.++...+.++.... +++ ....
T Consensus 104 kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~i~a~i~ 183 (394)
T 3txn_A 104 RLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPKVQGALD 183 (394)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHH
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHHHHHHHH
Confidence 56777778888888877776654 1111 1234444556777888888888887776432 221 2223
Q ss_pred HHHHHHHH-hcCCcHHHHHHHHHH
Q 007573 511 VMLSNLYA-AAGMWRDVTRVRLLM 533 (597)
Q Consensus 511 ~~l~~~~~-~~g~~~~A~~~~~~~ 533 (597)
..-|-.+. ..++|.+|...|-+.
T Consensus 184 ~~~Gi~~l~~~rdyk~A~~~F~ea 207 (394)
T 3txn_A 184 LQSGILHAADERDFKTAFSYFYEA 207 (394)
T ss_dssp HHHHHHHHHTTSCHHHHHHHHHHH
T ss_pred HHhhHHHHHhccCHHHHHHHHHHH
Confidence 34455566 678888887776554
No 247
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=91.64 E-value=14 Score=39.65 Aligned_cols=157 Identities=13% Similarity=0.036 Sum_probs=76.8
Q ss_pred HHHHhcCCHHHHHHHHhhcCCC-Ch--hHHHHHHHHHHHcCChhHHHHHHHHhHHCCCCCCHHHHH---HHHHHHhccch
Q 007573 246 TGFCKVGMLENARLLFERIQPK-DC--VSFNAMIAGYAQNGVAEEALRLFSGMIKMDMQPDDATLV---SVFTACSALQL 319 (597)
Q Consensus 246 ~~~~~~g~~~~A~~~~~~~~~~-~~--~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~---~ll~~~~~~~~ 319 (597)
..+.-.|+-+....++..+.+. +. .-.-.+.-++...|+.+.+..+++.+.... .| ..-|. .+.-+|+..|+
T Consensus 498 li~vGTgn~~ai~~LL~~~~e~~~e~vrR~aalgLGll~~g~~e~~~~li~~L~~~~-dp-~vRygaa~alglAyaGTGn 575 (963)
T 4ady_A 498 LCMLGTGKPEAIHDMFTYSQETQHGNITRGLAVGLALINYGRQELADDLITKMLASD-ES-LLRYGGAFTIALAYAGTGN 575 (963)
T ss_dssp HHHTTCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCGGGGHHHHHHHHHCS-CH-HHHHHHHHHHHHHTTTSCC
T ss_pred hhhcccCCHHHHHHHHHHHhccCcHHHHHHHHHHHHhhhCCChHHHHHHHHHHHhCC-CH-HHHHHHHHHHHHHhcCCCC
Confidence 3344556655555555543321 11 122233334446677777777777666531 22 22222 23345667777
Q ss_pred hHHHHHHHHHHHHhCCCCcccHHHHHHHHHHhcCCHHHHHHHHhccC-CCChhhHH--HHHHHHHHcCCH-HHHHHHHHH
Q 007573 320 LNEGRQSHVLVIRNGFEANVSVCNAVITMYSRCGGILDSELAFRQIH-SPNLVSWN--TIIAAFAQHGHY-EKALIFFSQ 395 (597)
Q Consensus 320 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~~~~~--~li~~~~~~g~~-~~A~~~~~~ 395 (597)
.....+++..+.... ..++.-...+.-++...|+.+.+.++++.+. ..|..+-. .+..+....|.. .++++++..
T Consensus 576 ~~aIq~LL~~~~~d~-~d~VRraAViaLGlI~~g~~e~v~rlv~~L~~~~d~~VR~gAalALGli~aGn~~~~aid~L~~ 654 (963)
T 4ady_A 576 NSAVKRLLHVAVSDS-NDDVRRAAVIALGFVLLRDYTTVPRIVQLLSKSHNAHVRCGTAFALGIACAGKGLQSAIDVLDP 654 (963)
T ss_dssp HHHHHHHHHHHHHCS-CHHHHHHHHHHHHHHTSSSCSSHHHHTTTGGGCSCHHHHHHHHHHHHHHTSSSCCHHHHHHHHH
T ss_pred HHHHHHHHHHhccCC-cHHHHHHHHHHHHhhccCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhccCCCcHHHHHHHHH
Confidence 777776777666532 2222222222223334566666666666554 23333322 233333334443 567777777
Q ss_pred HHHCCCCCChHHH
Q 007573 396 MGLNGFDPDGITF 408 (597)
Q Consensus 396 m~~~g~~p~~~~~ 408 (597)
+.. .+|..+-
T Consensus 655 L~~---D~d~~Vr 664 (963)
T 4ady_A 655 LTK---DPVDFVR 664 (963)
T ss_dssp HHT---CSSHHHH
T ss_pred Hcc---CCCHHHH
Confidence 764 4444433
No 248
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=91.57 E-value=17 Score=39.09 Aligned_cols=292 Identities=11% Similarity=0.056 Sum_probs=145.0
Q ss_pred HHHHHHHHhCCChhHH-HHHH-HhcccC-CcchH-HHHHHHHHcCCChHHHHHHHhhcCCCC--CC--chHHHHHHHHHH
Q 007573 178 TAMLDGFMKKGEVDKA-RALS-DYMSFK-NVVSW-TVMITGYVKNERFCEARELFYRMPDYD--KN--VFVVTAMITGFC 249 (597)
Q Consensus 178 ~~li~~~~~~g~~~~A-~~~~-~~m~~~-~~~~~-~~ll~~~~~~g~~~~a~~~~~~~~~~~--~~--~~~~~~l~~~~~ 249 (597)
.++.+++...|--..- +... +.+.+. +-.-+ ....-+....|+.++++.++.....-. .+ ...-..+.-+..
T Consensus 343 ~~f~Naf~naG~~~D~~l~~~~~Wl~k~~~~~k~sA~aSLGlIh~g~~~~gl~~L~~yL~~~~s~~~~ik~GAllaLGli 422 (963)
T 4ady_A 343 VSVANGFMHAGTTDNSFIKANLPWLGKAQNWAKFTATASLGVIHKGNLLEGKKVMAPYLPGSRASSRFIKGGSLYGLGLI 422 (963)
T ss_dssp HHHHHHHHTTTTCCCHHHHHCHHHHHHCCTHHHHHHHHHHHHHTSSCTTTHHHHHTTTSTTSCCSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCCcchhhhcchhhhhccchHHHHHHHHHhhhhccCchHHHHHHHHHhccccCCCcHHHHHHHHHHHHHh
Confidence 4567788887754333 2111 111111 11111 222334557788888888888765411 12 223344455566
Q ss_pred hcCCHHHHHHHHhhcCC-CC--------h--hHHHHHHHHHHHcCC-hhHHHHHHHHhHHCCCCCCHHHHH--HHHHHHh
Q 007573 250 KVGMLENARLLFERIQP-KD--------C--VSFNAMIAGYAQNGV-AEEALRLFSGMIKMDMQPDDATLV--SVFTACS 315 (597)
Q Consensus 250 ~~g~~~~A~~~~~~~~~-~~--------~--~~~~~li~~~~~~g~-~~~A~~~~~~m~~~g~~p~~~~~~--~ll~~~~ 315 (597)
.+|..+++..++..... .+ . ..-..+.-+++-.|. -+++.+.+..+....- +...... .+...+.
T Consensus 423 ~ag~~~~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLGla~~GS~~eev~e~L~~~L~dd~-~~~~~~AalALGli~v 501 (963)
T 4ady_A 423 YAGFGRDTTDYLKNIIVENSGTSGDEDVDVLLHGASLGIGLAAMGSANIEVYEALKEVLYNDS-ATSGEAAALGMGLCML 501 (963)
T ss_dssp TTTTTHHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHTCC-HHHHHHHHHHHHHHHT
T ss_pred cCCCcHHHHHHHHHHHcCccccccccccHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHhcCC-HHHHHHHHHHHhhhhc
Confidence 66666667666654332 22 1 112233333333333 2456666666665321 1111111 2222334
Q ss_pred ccchhHHHHHHHHHHHHhCCCCcccHHHHHHHH--HHhcCCHHHHHHHHhccC-CCChh-hHH---HHHHHHHHcCCHHH
Q 007573 316 ALQLLNEGRQSHVLVIRNGFEANVSVCNAVITM--YSRCGGILDSELAFRQIH-SPNLV-SWN---TIIAAFAQHGHYEK 388 (597)
Q Consensus 316 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~g~~~~A~~~~~~~~-~~~~~-~~~---~li~~~~~~g~~~~ 388 (597)
..|+.+....++..+.+.. +..+...++.+ +.-.|+.+.+..+++.+. ..+.. -|. ++.-+|+..|+...
T Consensus 502 GTgn~~ai~~LL~~~~e~~---~e~vrR~aalgLGll~~g~~e~~~~li~~L~~~~dp~vRygaa~alglAyaGTGn~~a 578 (963)
T 4ady_A 502 GTGKPEAIHDMFTYSQETQ---HGNITRGLAVGLALINYGRQELADDLITKMLASDESLLRYGGAFTIALAYAGTGNNSA 578 (963)
T ss_dssp TCCCHHHHHHHHHHHHHCS---CHHHHHHHHHHHHHHTTTCGGGGHHHHHHHHHCSCHHHHHHHHHHHHHHTTTSCCHHH
T ss_pred ccCCHHHHHHHHHHHhccC---cHHHHHHHHHHHHhhhCCChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcCCCCHHH
Confidence 5667777777777666532 22333333333 335677777777777665 23333 232 23345677888777
Q ss_pred HHHHHHHHHHCCCCCChHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCH-HHHHHHHhhC
Q 007573 389 ALIFFSQMGLNGFDPDGITFLSLLSACGHAGKVNESMDLFELMVKVYGIIPSSEHYTCLVDILSRAGQL-EKAWQITQGM 467 (597)
Q Consensus 389 A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~-~~A~~~~~~~ 467 (597)
..++++.+.... ..+......+.-++...|+.+.+.++++.+.+ ...|....-..+.-+....|.. .+|.+.+..+
T Consensus 579 Iq~LL~~~~~d~-~d~VRraAViaLGlI~~g~~e~v~rlv~~L~~--~~d~~VR~gAalALGli~aGn~~~~aid~L~~L 655 (963)
T 4ady_A 579 VKRLLHVAVSDS-NDDVRRAAVIALGFVLLRDYTTVPRIVQLLSK--SHNAHVRCGTAFALGIACAGKGLQSAIDVLDPL 655 (963)
T ss_dssp HHHHHHHHHHCS-CHHHHHHHHHHHHHHTSSSCSSHHHHTTTGGG--CSCHHHHHHHHHHHHHHTSSSCCHHHHHHHHHH
T ss_pred HHHHHHHhccCC-cHHHHHHHHHHHHhhccCCHHHHHHHHHHHHh--cCCHHHHHHHHHHHHHhccCCCcHHHHHHHHHH
Confidence 777888887632 22222222233344445555556666665543 2234444444444444444433 5677777776
Q ss_pred CCCCCHHHH
Q 007573 468 PFEADTGVW 476 (597)
Q Consensus 468 ~~~p~~~~~ 476 (597)
...+|..+-
T Consensus 656 ~~D~d~~Vr 664 (963)
T 4ady_A 656 TKDPVDFVR 664 (963)
T ss_dssp HTCSSHHHH
T ss_pred ccCCCHHHH
Confidence 655555443
No 249
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=91.10 E-value=4.6 Score=39.72 Aligned_cols=181 Identities=9% Similarity=0.128 Sum_probs=115.9
Q ss_pred CCHHHHHHHHhccC---------CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHC-CCCCChHHHHHHHHHH----hcc
Q 007573 353 GGILDSELAFRQIH---------SPNLVSWNTIIAAFAQHGHYEKALIFFSQMGLN-GFDPDGITFLSLLSAC----GHA 418 (597)
Q Consensus 353 g~~~~A~~~~~~~~---------~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-g~~p~~~~~~~ll~~~----~~~ 418 (597)
|+++.|.+.+-.+. .........++..|...|+++...+.+.-+... |..+. ....++..+ ...
T Consensus 30 ~~~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lskkr~qlk~--ai~~~V~~~~~~l~~~ 107 (445)
T 4b4t_P 30 NDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSKKHGQLKL--SIQYMIQKVMEYLKSS 107 (445)
T ss_dssp HHHHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTTTSHH--HHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhhhHH--HHHHHHHHHHHHHhcC
Confidence 67888877764443 223456778889999999999998888766643 32222 223333322 222
Q ss_pred CcHH--HHHHHHHHhHHh--cCCCC---ChHHHHHHHHHHhhcCCHHHHHHHHhhCC---CCC-C----HHHHHHHHHHH
Q 007573 419 GKVN--ESMDLFELMVKV--YGIIP---SSEHYTCLVDILSRAGQLEKAWQITQGMP---FEA-D----TGVWGSLLAAC 483 (597)
Q Consensus 419 g~~~--~a~~~~~~~~~~--~~~~p---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~p-~----~~~~~~l~~~~ 483 (597)
...+ .-..+.+..... ..+-. .......|...|...|++.+|.+++.++. ... + ...+..-+..|
T Consensus 108 ~~~d~~~~~~~i~~l~~vte~kiflE~erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~ 187 (445)
T 4b4t_P 108 KSLDLNTRISVIETIRVVTENKIFVEVERARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELS 187 (445)
T ss_dssp CTTHHHHHHHHHHCCSSSSSCCCCCCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHH
T ss_pred CchhHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHH
Confidence 2222 222222211110 01111 12344678899999999999999998875 111 1 33566677789
Q ss_pred HhcCCHHHHHHHHHHHHh---cCCCC----CchHHHHHHHHHhcCCcHHHHHHHHHHHh
Q 007573 484 VINLNVELGELAAKKMRE---LDPQN----SAVYVMLSNLYAAAGMWRDVTRVRLLMKE 535 (597)
Q Consensus 484 ~~~g~~~~a~~~~~~~~~---~~p~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 535 (597)
...+|+.+|..++.++.. ..+.+ ...+...+..+...++|.+|.+.|..+.+
T Consensus 188 l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~~~ 246 (445)
T 4b4t_P 188 ILKGDYSQATVLSRKILKKTFKNPKYESLKLEYYNLLVKISLHKREYLEVAQYLQEIYQ 246 (445)
T ss_dssp HHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHHhhcccCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 999999999999998753 12332 35667889999999999999988877754
No 250
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=88.98 E-value=1.2 Score=43.14 Aligned_cols=59 Identities=10% Similarity=-0.023 Sum_probs=39.0
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCcHHHHHHHHHHHh
Q 007573 477 GSLLAACVINLNVELGELAAKKMRELDPQNSAVYVMLSNLYAAAGMWRDVTRVRLLMKE 535 (597)
Q Consensus 477 ~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 535 (597)
..++..+...|+.++++..+..++..+|-+...+..++.+|.+.|+..+|.+.|+...+
T Consensus 175 ~~~~~~~l~~g~~~~a~~~l~~~~~~~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~ 233 (388)
T 2ff4_A 175 TAKAEAEIACGRASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKT 233 (388)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 33445556666777777777777777776666677777777777777777766666543
No 251
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=88.48 E-value=2.9 Score=34.11 Aligned_cols=129 Identities=8% Similarity=0.027 Sum_probs=77.8
Q ss_pred CCCcchHHHHHHHHHhcCChHHHHHHHhhcCC-----CCcc-------hHHHHHHHHHhCCChhHHHHHHhhCCC-----
Q 007573 47 TQYVFVNNAKISALSRAGKISAARQLFDQMTT-----KDVI-------TWNAIITGYWQNGFLQESKNLFQSMPV----- 109 (597)
Q Consensus 47 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~~~-------~~~~li~~~~~~g~~~~A~~~~~~~~~----- 109 (597)
+.+...+-.-++.+...|.++.|+-+.+.+.. +++. +...+..++...|++.+|...|++..+
T Consensus 17 ~~~~~~l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l 96 (167)
T 3ffl_A 17 RGSHMNVIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKAL 96 (167)
T ss_dssp ----CCHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC
T ss_pred CccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHH
Confidence 45556677778888999999999998887643 4431 456778889999999999999988542
Q ss_pred -CCcchHHHHHHHHHcCCChHHHHHHHccCCCCChhhHHHHHHHHHcCCChHHHHHHHccCCC--CCchhHHHHHHHH
Q 007573 110 -KNIVSWNCMIAGCIDNDRIDDAFDYFQAMPERNTATYNAMISGFLKHGRLEEATRLFEQMPR--RNVISYTAMLDGF 184 (597)
Q Consensus 110 -~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~li~~~ 184 (597)
.+..+..++. ........ .. ...+..+.--+..+|.+.|++++|+.+++.++. +++.+--.|.+.|
T Consensus 97 ~k~~s~~~~~~----~~ss~p~s---~~--~~~e~Elkykia~C~~~l~~~~~Ai~~Le~Ip~k~Rt~kvnm~LakLy 165 (167)
T 3ffl_A 97 SKTSKVRPSTG----NSASTPQS---QC--LPSEIEVKYKLAECYTVLKQDKDAIAILDGIPSRQRTPKINMLLANLY 165 (167)
T ss_dssp ---------------------------C--CCCHHHHHHHHHHHHHHTTCHHHHHHHHHTSCGGGCCHHHHHHHHHHC
T ss_pred hcCCCcccccc----ccCCCccc---cc--ccchHHHHHHHHHHHHHHCCHHHHHHHHhcCCchhcCHHHHHHHHHHh
Confidence 1221111110 00011100 01 123444555578888999999999999998874 5555555555443
No 252
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=88.46 E-value=6.6 Score=44.06 Aligned_cols=192 Identities=7% Similarity=-0.013 Sum_probs=112.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHhccCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC-----------------
Q 007573 341 VCNAVITMYSRCGGILDSELAFRQIHSPNLVSWNTIIAAFAQHGHYEKALIFFSQMGLNGFDP----------------- 403 (597)
Q Consensus 341 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p----------------- 403 (597)
....++..+.+.+..+-+.++..-. +.+...--.+..++...|++++|.+.|.+... |+..
T Consensus 814 ~~~~l~~~l~~~~~~~~~~~l~~~~-~~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~-~~~~~~~l~~~~~~~~~~~~~ 891 (1139)
T 4fhn_B 814 LVTELVEKLFLFKQYNACMQLIGWL-NSDPIAVYLKALIYLKSKEAVKAVRCFKTTSL-VLYSHTSQFAVLREFQEIAEK 891 (1139)
T ss_dssp HHHHHHHHHHHHSCTTHHHHHHHHS-CCCHHHHHHHHHHHHHTTCHHHHHHHHHTCCC-SCTTCCCSCSSHHHHHHHHHT
T ss_pred hHHHHHHHHHHhhhHHHHHHHhhhc-cCCcHHHHHHHHHHHhcCCHHHHHHHHHHHhh-hhcccchhhhhhccccccccc
Confidence 3444555666667776666654433 33444444455667778888888888866421 1111
Q ss_pred ------ChHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCC---hHHHHHHHHHHhhcCCHHHHHHHHhhCC-CCCCH
Q 007573 404 ------DGITFLSLLSACGHAGKVNESMDLFELMVKVYGIIPS---SEHYTCLVDILSRAGQLEKAWQITQGMP-FEADT 473 (597)
Q Consensus 404 ------~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p~~ 473 (597)
-..-|..++..+.+.+.++.+.++-..+.+..+-.++ ...|..+.+.+...|++++|...+-.++ ..--.
T Consensus 892 ~~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~~~r~ 971 (1139)
T 4fhn_B 892 YHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTTPLKK 971 (1139)
T ss_dssp TTSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHSSSCH
T ss_pred ccccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCHHHHH
Confidence 1234677777888888888888877776664222211 2257778888888999999988887665 22235
Q ss_pred HHHHHHHHHHHhcCCHH------------HHHHHHHH-HHhc-CCCC-CchHHHHHHHHHhcCCcHHHHHH-HHHHH
Q 007573 474 GVWGSLLAACVINLNVE------------LGELAAKK-MREL-DPQN-SAVYVMLSNLYAAAGMWRDVTRV-RLLMK 534 (597)
Q Consensus 474 ~~~~~l~~~~~~~g~~~------------~a~~~~~~-~~~~-~p~~-~~~~~~l~~~~~~~g~~~~A~~~-~~~~~ 534 (597)
..+..|+...++.|..+ +..+++.. +... ++.+ +..|..|=.-+...|++..|..+ |+.+.
T Consensus 972 ~cLr~LV~~lce~~~~~~L~~lpf~gl~~~Vd~IL~~kAr~~~~~~~~p~Yy~iLYs~ri~r~dyR~AA~vmYe~~~ 1048 (1139)
T 4fhn_B 972 SCLLDFVNQLTKQGKINQLLNYSMPTLRQDVDNLLERKAFQMINVESQPCWYNILFSWRYKHQNYRDAAAIIYEKLS 1048 (1139)
T ss_dssp HHHHHHHHHHHHHCCHHHHHHHTTTSCHHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHHTTSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCChhhhhCCCCccHHHHHHHHHHHHHHhCCccccCCCHHHHhHhhhhccCChHHHHHHHHHHHH
Confidence 66777777766666543 33333322 2222 3444 34444444445566776655543 55553
No 253
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=87.66 E-value=5.4 Score=44.76 Aligned_cols=143 Identities=8% Similarity=0.029 Sum_probs=92.1
Q ss_pred HHHHHHHHHhCCChhHHHHHHHhcccCCcchHHHHHHHHHcCCChHHHHHHHhhcCC-CC--------------------
Q 007573 177 YTAMLDGFMKKGEVDKARALSDYMSFKNVVSWTVMITGYVKNERFCEARELFYRMPD-YD-------------------- 235 (597)
Q Consensus 177 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~-~~-------------------- 235 (597)
...++..+.+.+.++-+.++.... +.+......+..++...|++++|.+.|.++.. +.
T Consensus 815 ~~~l~~~l~~~~~~~~~~~l~~~~-~~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l~~~~~~~~~~~~~~~ 893 (1139)
T 4fhn_B 815 VTELVEKLFLFKQYNACMQLIGWL-NSDPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEKYH 893 (1139)
T ss_dssp HHHHHHHHHHHSCTTHHHHHHHHS-CCCHHHHHHHHHHHHHTTCHHHHHHHHHTCCCSCTTCCCSCSSHHHHHHHHHTTT
T ss_pred HHHHHHHHHHhhhHHHHHHHhhhc-cCCcHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccchhhhhhccccccccccc
Confidence 334566667777777776655443 33444445566677778888888888876633 10
Q ss_pred ---CCchHHHHHHHHHHhcCCHHHHHHHHhhc----CCCCh----hHHHHHHHHHHHcCChhHHHHHHHHhHHCCCCCCH
Q 007573 236 ---KNVFVVTAMITGFCKVGMLENARLLFERI----QPKDC----VSFNAMIAGYAQNGVAEEALRLFSGMIKMDMQPDD 304 (597)
Q Consensus 236 ---~~~~~~~~l~~~~~~~g~~~~A~~~~~~~----~~~~~----~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~ 304 (597)
.-..-|..++..+.+.+.++.+.++-... .+.+. ..|..+.+.+...|++++|...+..+.....+ .
T Consensus 894 ~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~~~r--~ 971 (1139)
T 4fhn_B 894 HQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTTPLK--K 971 (1139)
T ss_dssp SCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHSSSC--H
T ss_pred ccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCHHHH--H
Confidence 01123677888888888888777665432 22332 26888999999999999999999888765433 4
Q ss_pred HHHHHHHHHHhccchhHH
Q 007573 305 ATLVSVFTACSALQLLNE 322 (597)
Q Consensus 305 ~~~~~ll~~~~~~~~~~~ 322 (597)
..+..++..++..+..+.
T Consensus 972 ~cLr~LV~~lce~~~~~~ 989 (1139)
T 4fhn_B 972 SCLLDFVNQLTKQGKINQ 989 (1139)
T ss_dssp HHHHHHHHHHHHHCCHHH
T ss_pred HHHHHHHHHHHhCCChhh
Confidence 556666666665555443
No 254
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=87.58 E-value=4.2 Score=39.14 Aligned_cols=71 Identities=10% Similarity=0.105 Sum_probs=52.9
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHhccCcHHHHHHHHHHhHH----hcCCCCChHHHH
Q 007573 374 NTIIAAFAQHGHYEKALIFFSQMGLNGFDPDGITFLSLLSACGHAGKVNESMDLFELMVK----VYGIIPSSEHYT 445 (597)
Q Consensus 374 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~----~~~~~p~~~~~~ 445 (597)
..++..+...|++++|+..+..+.... +-+...+..++.++.+.|+..+|.+.|+.+.+ +.|+.|++.+-.
T Consensus 175 ~~~~~~~l~~g~~~~a~~~l~~~~~~~-P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l~~ 249 (388)
T 2ff4_A 175 TAKAEAEIACGRASAVIAELEALTFEH-PYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLRA 249 (388)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHHHH
Confidence 345666777888888888888877542 44677888888888888888888888887654 358888876543
No 255
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=87.20 E-value=4.5 Score=32.03 Aligned_cols=65 Identities=11% Similarity=-0.043 Sum_probs=31.3
Q ss_pred CCHHHHHHHHHHHHhcCC---HHHHHHHHHHHHhcCCCC-CchHHHHHHHHHhcCCcHHHHHHHHHHHh
Q 007573 471 ADTGVWGSLLAACVINLN---VELGELAAKKMRELDPQN-SAVYVMLSNLYAAAGMWRDVTRVRLLMKE 535 (597)
Q Consensus 471 p~~~~~~~l~~~~~~~g~---~~~a~~~~~~~~~~~p~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 535 (597)
|+..+--.+.+++.++.+ ..+++.+++.+.+.+|.. ...+..|+-++.+.|++++|.++.+.+.+
T Consensus 37 vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~ 105 (144)
T 1y8m_A 37 ATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFE 105 (144)
T ss_dssp SCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 444444444444444432 234555555555544433 34444555555555555555555555544
No 256
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=86.96 E-value=3.3 Score=30.37 Aligned_cols=63 Identities=13% Similarity=0.142 Sum_probs=47.0
Q ss_pred CHHHHHHHHHHHHHCCCCCChHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChHHHHHHHH
Q 007573 385 HYEKALIFFSQMGLNGFDPDGITFLSLLSACGHAGKVNESMDLFELMVKVYGIIPSSEHYTCLVD 449 (597)
Q Consensus 385 ~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~ 449 (597)
+.-+..+-++.+....+-|++......+.+|.+.+++..|.++++.+..+. .+...+|..++.
T Consensus 25 D~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K~--~~~~~iY~~~lq 87 (109)
T 1v54_E 25 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKA--GPHKEIYPYVIQ 87 (109)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT--TTCTTHHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHh--cCchhhHHHHHH
Confidence 344566666777777788999999999999999999999999998887643 333456766653
No 257
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=86.80 E-value=4.5 Score=33.02 Aligned_cols=26 Identities=23% Similarity=0.197 Sum_probs=14.8
Q ss_pred HHHHHHHHHhhcCCHHHHHHHHhhCC
Q 007573 443 HYTCLVDILSRAGQLEKAWQITQGMP 468 (597)
Q Consensus 443 ~~~~l~~~~~~~g~~~~A~~~~~~~~ 468 (597)
.--.+...|.+.|+.++|+.+++.++
T Consensus 124 lkykia~C~~~l~~~~~Ai~~Le~Ip 149 (167)
T 3ffl_A 124 VKYKLAECYTVLKQDKDAIAILDGIP 149 (167)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHTSC
T ss_pred HHHHHHHHHHHHCCHHHHHHHHhcCC
Confidence 33345555566666666666666655
No 258
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=86.14 E-value=9 Score=34.15 Aligned_cols=53 Identities=13% Similarity=0.097 Sum_probs=31.0
Q ss_pred HHHcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHhccCcHHHHHHHHHHhHH
Q 007573 380 FAQHGHYEKALIFFSQMGLNGFDPDGITFLSLLSACGHAGKVNESMDLFELMVK 433 (597)
Q Consensus 380 ~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 433 (597)
..+.|+.++|++....-++.. +-|...-..++..++-.|+++.|.+-++...+
T Consensus 7 ll~~g~L~~al~~~~~~VR~~-P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~ 59 (273)
T 1zbp_A 7 ALSEGQLQQALELLIEAIKAS-PKDASLRSSFIELLCIDGDFERADEQLMQSIK 59 (273)
T ss_dssp HTTTTCHHHHHHHHHHHHHTC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHhCCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 345566666666666655542 33444555556666666666666666665543
No 259
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=85.93 E-value=3.2 Score=32.41 Aligned_cols=71 Identities=10% Similarity=-0.010 Sum_probs=42.9
Q ss_pred CChHHHHHHHHHHhhcCCHH---HHHHHHhhCC-CCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCch
Q 007573 439 PSSEHYTCLVDILSRAGQLE---KAWQITQGMP-FEA--DTGVWGSLLAACVINLNVELGELAAKKMRELDPQNSAV 509 (597)
Q Consensus 439 p~~~~~~~l~~~~~~~g~~~---~A~~~~~~~~-~~p--~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~ 509 (597)
|++.+--.+..++.+....+ +++.+++++. ..| ....+--|.-++.+.|++++|.+..+.+++.+|+|..+
T Consensus 38 vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~N~QA 114 (134)
T 3o48_A 38 ATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQV 114 (134)
T ss_dssp SCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCTTCHHH
T ss_pred CChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCCHHH
Confidence 34444444455555554432 3444444432 223 23355566677888888888888888888888887553
No 260
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=85.67 E-value=26 Score=33.55 Aligned_cols=57 Identities=14% Similarity=0.008 Sum_probs=25.9
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHCCCCCC-----hHHHHHHHHHHhccCcHHHHHHHHHHhH
Q 007573 376 IIAAFAQHGHYEKALIFFSQMGLNGFDPD-----GITFLSLLSACGHAGKVNESMDLFELMV 432 (597)
Q Consensus 376 li~~~~~~g~~~~A~~~~~~m~~~g~~p~-----~~~~~~ll~~~~~~g~~~~a~~~~~~~~ 432 (597)
++..|...|++.+|.+++.++.+.=-..| ...+..-+..|...+++.++...+....
T Consensus 105 L~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~ 166 (394)
T 3txn_A 105 LIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSAR 166 (394)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 44455555555555555555543211111 1123333344455555555555555443
No 261
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=85.25 E-value=23 Score=32.58 Aligned_cols=183 Identities=10% Similarity=0.093 Sum_probs=103.8
Q ss_pred HHHHcCCChHHHHHHHhhcCCCCCCchHHHHHHHHHHhcCCHHHHHHHHhhcCCCChhHHHHHHHHHHHcCChhHHHHH-
Q 007573 213 TGYVKNERFCEARELFYRMPDYDKNVFVVTAMITGFCKVGMLENARLLFERIQPKDCVSFNAMIAGYAQNGVAEEALRL- 291 (597)
Q Consensus 213 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~- 291 (597)
+.....|++=+|.+.++ ++..-|.+.+++++|.+++..- ...+.+.|+...|-++
T Consensus 21 ~~~I~~G~yYEAhQ~~R-------------tl~~Ry~~~~~~~eAidlL~~g-----------a~~ll~~~Q~~sa~DLa 76 (312)
T 2wpv_A 21 ENKIKAGDYYEAHQTLR-------------TIANRYVRSKSYEHAIELISQG-----------ALSFLKAKQGGSGTDLI 76 (312)
T ss_dssp HHHHHHTCHHHHHHHHH-------------HHHHHHHHTTCHHHHHHHHHHH-----------HHHHHHTTCHHHHHHHH
T ss_pred HHHhhccChHHHHHHHH-------------HHHHHHHHhcCHHHHHHHHHHH-----------HHHHHHCCCcchHHHHH
Confidence 34445566666665543 5666677778888888776432 2234556665554443
Q ss_pred ---HHHhHHCCCCCCHHHHHHHHHHHhccc-----hhHHHHHHHHHHHHhCC--CCcccHHHHHHHHHHhcCCHHHHHHH
Q 007573 292 ---FSGMIKMDMQPDDATLVSVFTACSALQ-----LLNEGRQSHVLVIRNGF--EANVSVCNAVITMYSRCGGILDSELA 361 (597)
Q Consensus 292 ---~~~m~~~g~~p~~~~~~~ll~~~~~~~-----~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~ 361 (597)
++-..+.+++++......++..+.... +.+-.........+.|- ..++.....+...|.+.|++.+|+..
T Consensus 77 ~llvev~~~~~~~~~~~~~~rl~~l~~~~p~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H 156 (312)
T 2wpv_A 77 FYLLEVYDLAEVKVDDISVARLVRLIAELDPSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERY 156 (312)
T ss_dssp HHHHHHHHHTTCCCSHHHHHHHHHHHTTCCTTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHH
Confidence 444455677777777766666654422 22223333334444432 24677888888999999999998887
Q ss_pred HhccCCCChhhHHHHHHHHHHc---CCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHhccCcHHHHHHHHHHhHHh
Q 007573 362 FRQIHSPNLVSWNTIIAAFAQH---GHYEKALIFFSQMGLNGFDPDGITFLSLLSACGHAGKVNESMDLFELMVKV 434 (597)
Q Consensus 362 ~~~~~~~~~~~~~~li~~~~~~---g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 434 (597)
|-.....+...+..++.-+... |...++--++-+ .++ -|.-.|++..|..+++...+.
T Consensus 157 ~i~~~~~s~~~~a~~l~~w~~~~~~~~~~e~dlf~~R--------------aVL-~yL~l~n~~~A~~~~~~f~~~ 217 (312)
T 2wpv_A 157 FMLGTHDSMIKYVDLLWDWLCQVDDIEDSTVAEFFSR--------------LVF-NYLFISNISFAHESKDIFLER 217 (312)
T ss_dssp HHTSCHHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHH--------------HHH-HHHHTTBHHHHHHHHHHHHHH
T ss_pred HHhCCCccHHHHHHHHHHHHHhcCCCCcchHHHHHHH--------------HHH-HHHHhcCHHHHHHHHHHHHHH
Confidence 7533222444555544443333 333332221111 122 234567888888888876553
No 262
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=84.48 E-value=39 Score=34.64 Aligned_cols=439 Identities=12% Similarity=0.020 Sum_probs=226.5
Q ss_pred HhcCChHHHHHHHhhcCCCCcch---HHHHHHHHHhCCChhHHHHHHhhCCCC--CcchHHHHHHHHHcCCChHHHHHHH
Q 007573 61 SRAGKISAARQLFDQMTTKDVIT---WNAIITGYWQNGFLQESKNLFQSMPVK--NIVSWNCMIAGCIDNDRIDDAFDYF 135 (597)
Q Consensus 61 ~~~g~~~~A~~~~~~~~~~~~~~---~~~li~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~ll~~~~~~~~~~~A~~~~ 135 (597)
.+.|++..+.++-..+..-.... |-.+...+ ....+.+...++.+-... ....-..-+..+.+.+++......+
T Consensus 17 ~~~~~~~~~~~l~~~l~~~pL~~yl~y~~l~~~l-~~~~~~ev~~Fl~~~~~~p~~~~Lr~~~l~~l~~~~~w~~~l~~~ 95 (618)
T 1qsa_A 17 WDNRQMDVVEQMMPGLKDYPLYPYLEYRQITDDL-MNQPAVTVTNFVRANPTLPPARTLQSRFVNELARREDWRGLLAFS 95 (618)
T ss_dssp HHTTCHHHHHHHSGGGTTSTTHHHHHHHHHHHTG-GGCCHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHTTCHHHHHHHC
T ss_pred HHCCCHHHHHHHHHhhcCCCcHHHHHHHHHHhCc-ccCCHHHHHHHHHHCCCChhHHHHHHHHHHHHHhCCCHHHHHHhc
Confidence 46788888888777765422222 22222221 122455666666665532 1222334445566677777777766
Q ss_pred ccCCCCChhhHHHHHHHHHcCCChHHHHHHHccCC---CCCchhHHHHHHHHHhCCChhHHHHHHHhcccCCcchHHHHH
Q 007573 136 QAMPERNTATYNAMISGFLKHGRLEEATRLFEQMP---RRNVISYTAMLDGFMKKGEVDKARALSDYMSFKNVVSWTVMI 212 (597)
Q Consensus 136 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~ll 212 (597)
.. .+.+...--....+....|+..+|....+.+= ...+.....++..+.+.|......- -.-+
T Consensus 96 ~~-~p~~~~~~c~~~~A~~~~G~~~~a~~~~~~lW~~~~~~p~~c~~l~~~~~~~g~lt~~~~-------------~~R~ 161 (618)
T 1qsa_A 96 PE-KPGTTEAQCNYYYAKWNTGQSEEAWQGAKELWLTGKSQPNACDKLFSVWRASGKQDPLAY-------------LERI 161 (618)
T ss_dssp CS-CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHHSCSSCCCTHHHHHHHHHHHTTCSCHHHH-------------HHHH
T ss_pred cC-CCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCcHHHHHHHHHHHHCCCCCHHHH-------------HHHH
Confidence 65 34444444445566666777555544333321 2345566777777776665543321 1223
Q ss_pred HHHHcCCChHHHHHHHhhcCCCCCCch-HHHHHHHHHHhcCCHHHHHHHHhhcCCCChh---HHHHHHHHHHHcCChhHH
Q 007573 213 TGYVKNERFCEARELFYRMPDYDKNVF-VVTAMITGFCKVGMLENARLLFERIQPKDCV---SFNAMIAGYAQNGVAEEA 288 (597)
Q Consensus 213 ~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~---~~~~li~~~~~~g~~~~A 288 (597)
......|+...|..+...+. ++.. ....++..+.. ...+........ ++.. .+...+.-+.+ .+++.|
T Consensus 162 ~~al~~~~~~~a~~l~~~l~---~~~~~~a~~~~al~~~---p~~~~~~~~~~~-~~~~~~~~~~~~~~rlar-~d~~~A 233 (618)
T 1qsa_A 162 RLAMKAGNTGLVTVLAGQMP---ADYQTIASAIISLANN---PNTVLTFARTTG-ATDFTRQMAAVAFASVAR-QDAENA 233 (618)
T ss_dssp HHHHHTTCHHHHHHHHHTCC---GGGHHHHHHHHHHHHC---GGGHHHHHHHSC-CCHHHHHHHHHHHHHHHH-HCHHHH
T ss_pred HHHHHCCCHHHHHHHHHhCC---HHHHHHHHHHHHHHhC---hHhHHHHHhccC-CChhhHHHHHHHHHHHHh-cCHHHH
Confidence 55566777777777766552 2222 22334443333 233333333332 2222 12222333333 378999
Q ss_pred HHHHHHhHHCCCCCCHHHHHH----HHHHHhccchhHHHHHHHHHHHHhCCCCcccHHHHHHHHHHhcCCHHHHHHHHhc
Q 007573 289 LRLFSGMIKMDMQPDDATLVS----VFTACSALQLLNEGRQSHVLVIRNGFEANVSVCNAVITMYSRCGGILDSELAFRQ 364 (597)
Q Consensus 289 ~~~~~~m~~~g~~p~~~~~~~----ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 364 (597)
...+....+.+ ..+...... +.......+...++...+....... .+.....-.+....+.|+++.|...|+.
T Consensus 234 ~~~~~~~~~~~-~~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~e~~~r~Alr~~d~~~a~~~~~~ 310 (618)
T 1qsa_A 234 RLMIPSLAQAQ-QLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMRS--QSTSLIERRVRMALGTGDRRGLNTWLAR 310 (618)
T ss_dssp HHHHHHHHHHT-TCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHTC--CCHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHhhhhcc-CCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhccccC--CChHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 99998887644 223332222 2223334452445555555544332 3333344444555678999999999999
Q ss_pred cCCCC---hhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCC-
Q 007573 365 IHSPN---LVSWNTIIAAFAQHGHYEKALIFFSQMGLNGFDPDGITFLSLLSACGHAGKVNESMDLFELMVKVYGIIPS- 440 (597)
Q Consensus 365 ~~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~- 440 (597)
|.... ....-=+..++...|+.++|..+|..+.. +. +|..++.+ .+.|..-. . ......+.
T Consensus 311 l~~~~~~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~----~~--~fYg~lAa-~~Lg~~~~-------~-~~~~~~~~~ 375 (618)
T 1qsa_A 311 LPMEAKEKDEWRYWQADLLLERGREAEAKEILHQLMQ----QR--GFYPMVAA-QRIGEEYE-------L-KIDKAPQNV 375 (618)
T ss_dssp SCTTGGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHT----SC--SHHHHHHH-HHTTCCCC-------C-CCCCCCSCC
T ss_pred ccccccccHhHHHHHHHHHHHcCCHHHHHHHHHHHhc----CC--ChHHHHHH-HHcCCCCC-------C-CCCCCChhH
Confidence 97432 22222344567788999999999999874 22 34443322 22221000 0 00001110
Q ss_pred h---H--HHHHHHHHHhhcCCHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC---CCCchHHH
Q 007573 441 S---E--HYTCLVDILSRAGQLEKAWQITQGMPFEADTGVWGSLLAACVINLNVELGELAAKKMRELDP---QNSAVYVM 512 (597)
Q Consensus 441 ~---~--~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p---~~~~~~~~ 512 (597)
. . .-..-+..+...|....|...+..+....+......+.......|..+.++....+....+. .-|..|..
T Consensus 376 ~~~~~~~~~~~r~~~L~~~g~~~~a~~ew~~~~~~~~~~~~~~la~~a~~~~~~~~~v~~~~~~~~~~~~~~~~P~~y~~ 455 (618)
T 1qsa_A 376 DSALTQGPEMARVRELMYWNLDNTARSEWANLVKSKSKTEQAQLARYAFNNQWWDLSVQATIAGKLWDHLEERFPLAYND 455 (618)
T ss_dssp CCHHHHSHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHTTCTTCHHHHSCCTTHH
T ss_pred HhhhccChHHHHHHHHHHCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhcchhhhCCcchHH
Confidence 0 0 11123456778899999988777654334444444555556678888888766654332221 11344556
Q ss_pred HHHHHHhcCCcHHHHHHHHHHHhCCCcc
Q 007573 513 LSNLYAAAGMWRDVTRVRLLMKEQGVTK 540 (597)
Q Consensus 513 l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 540 (597)
++.-+.+.-.++.+.-.---..+++..+
T Consensus 456 ~i~~~a~~~gv~~~ll~Ai~~~ES~f~p 483 (618)
T 1qsa_A 456 LFKRYTSGKEIPQSYAMAIARQESAWNP 483 (618)
T ss_dssp HHHHHHTTSSSCHHHHHHHHHHHHTTCT
T ss_pred HHHHHHHHcCCCHHHHHHHHHHhCCCCC
Confidence 6666666555555443322223444433
No 263
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=83.70 E-value=35 Score=33.42 Aligned_cols=206 Identities=11% Similarity=0.069 Sum_probs=126.4
Q ss_pred cCChhHHHHHHHHhHHC-----CCCCCHHHHHHHHHHHhccchhHHHHHHHHHHHHhCCCCcc---cHHHHHHHHHHhcC
Q 007573 282 NGVAEEALRLFSGMIKM-----DMQPDDATLVSVFTACSALQLLNEGRQSHVLVIRNGFEANV---SVCNAVITMYSRCG 353 (597)
Q Consensus 282 ~g~~~~A~~~~~~m~~~-----g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~g 353 (597)
.|+++.|++.+..+.+. ...........++..|...++++.....+..+.+..-.... ...+.++.......
T Consensus 29 ~~~~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lskkr~qlk~ai~~~V~~~~~~l~~~~ 108 (445)
T 4b4t_P 29 QNDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSKKHGQLKLSIQYMIQKVMEYLKSSK 108 (445)
T ss_dssp HHHHHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTTTSHHHHHHHHHHHHHHHHHHC
T ss_pred cCCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCC
Confidence 37788998887666542 24445667788899999999999888877666543222211 11222233333333
Q ss_pred C--HHHHHHHHhccC---CC--Ch-----hhHHHHHHHHHHcCCHHHHHHHHHHHHHC--CCCCC---hHHHHHHHHHHh
Q 007573 354 G--ILDSELAFRQIH---SP--NL-----VSWNTIIAAFAQHGHYEKALIFFSQMGLN--GFDPD---GITFLSLLSACG 416 (597)
Q Consensus 354 ~--~~~A~~~~~~~~---~~--~~-----~~~~~li~~~~~~g~~~~A~~~~~~m~~~--g~~p~---~~~~~~ll~~~~ 416 (597)
. .+.-..+.+.+. +. -. .....+...+...|++.+|.+++..+... |..+. ...+..-++.|.
T Consensus 109 ~~d~~~~~~~i~~l~~vte~kiflE~erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l 188 (445)
T 4b4t_P 109 SLDLNTRISVIETIRVVTENKIFVEVERARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSI 188 (445)
T ss_dssp TTHHHHHHHHHHCCSSSSSCCCCCCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHH
Confidence 2 222333444333 11 11 13356778888999999999999998743 32222 235666778889
Q ss_pred ccCcHHHHHHHHHHhHHh-cCCCCC----hHHHHHHHHHHhhcCCHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHH
Q 007573 417 HAGKVNESMDLFELMVKV-YGIIPS----SEHYTCLVDILSRAGQLEKAWQITQGMPFEADTGVWGSLLAACVINLNVEL 491 (597)
Q Consensus 417 ~~g~~~~a~~~~~~~~~~-~~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~ 491 (597)
..+++..|..++.++... ....+. ...+...+..+...+++.+|.+.|.++ ...+...++...
T Consensus 189 ~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~------------~~~~~~~~d~~~ 256 (445)
T 4b4t_P 189 LKGDYSQATVLSRKILKKTFKNPKYESLKLEYYNLLVKISLHKREYLEVAQYLQEI------------YQTDAIKSDEAK 256 (445)
T ss_dssp HHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHH------------HHHHHHHSCHHH
T ss_pred HCCCHHHHHHHHHHHHHhhcccCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH------------HhcccccCCHHH
Confidence 999999999999887532 122222 345677788888899999988776554 344555556555
Q ss_pred HHHHHHHH
Q 007573 492 GELAAKKM 499 (597)
Q Consensus 492 a~~~~~~~ 499 (597)
...++..+
T Consensus 257 ~~~~L~~~ 264 (445)
T 4b4t_P 257 WKPVLSHI 264 (445)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 44444433
No 264
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=83.26 E-value=25 Score=31.54 Aligned_cols=174 Identities=11% Similarity=-0.010 Sum_probs=87.2
Q ss_pred CCCcchHHHHHHHHHhcCChHHHHHHHhhcCCCCcchHHHHHHHHHhCCChh----HHHHHHhh--CCCCCcchHHHHHH
Q 007573 47 TQYVFVNNAKISALSRAGKISAARQLFDQMTTKDVITWNAIITGYWQNGFLQ----ESKNLFQS--MPVKNIVSWNCMIA 120 (597)
Q Consensus 47 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~----~A~~~~~~--~~~~~~~~~~~ll~ 120 (597)
.+|..+-...+.++++.|..+....+.+.+..++...-...+.++.+.|... ..+.++.. ...++...-...+.
T Consensus 34 ~~~~~vr~~A~~~L~~~~~~~~~~~L~~~l~d~~~~vR~~A~~aL~~l~~~~~~~~~l~~~L~~~~~~d~~~~vr~~a~~ 113 (280)
T 1oyz_A 34 DHNSLKRISSARVLQLRGGQDAVRLAIEFCSDKNYIRRDIGAFILGQIKICKKCEDNVFNILNNMALNDKSACVRATAIE 113 (280)
T ss_dssp CSSHHHHHHHHHHHHHHCCHHHHHHHHHHHTCSSHHHHHHHHHHHHHSCCCTTTHHHHHHHHHHHHHHCSCHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHccCCchHHHHHHHHHcCCCHHHHHHHHHHHHHhccccccchHHHHHHHHHHhcCCCHHHHHHHHH
Confidence 4555555556666666666544444555555566665566666676666432 23334432 12446555666666
Q ss_pred HHHcCCC-----hHHHHHHHcc-CCCCChhhHHHHHHHHHcCCChHHHHHHHccCCCCCchhHHHHHHHHHhCC-ChhHH
Q 007573 121 GCIDNDR-----IDDAFDYFQA-MPERNTATYNAMISGFLKHGRLEEATRLFEQMPRRNVISYTAMLDGFMKKG-EVDKA 193 (597)
Q Consensus 121 ~~~~~~~-----~~~A~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g-~~~~A 193 (597)
++...+. ...+...+.. +..++..+-...+.++.+.|+.+..-.+.+-+..++...-...+.++.+.| ....+
T Consensus 114 aL~~l~~~~~~~~~~~~~~L~~~l~d~~~~vR~~a~~aL~~~~~~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~~~~~ 193 (280)
T 1oyz_A 114 STAQRCKKNPIYSPKIVEQSQITAFDKSTNVRRATAFAISVINDKATIPLLINLLKDPNGDVRNWAAFAININKYDNSDI 193 (280)
T ss_dssp HHHHHHHHCGGGHHHHHHHHHHHTTCSCHHHHHHHHHHHHTC---CCHHHHHHHHTCSSHHHHHHHHHHHHHHTCCCHHH
T ss_pred HHHHHhccCCcccHHHHHHHHHHhhCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHcCCCHHHHHHHHHHHHhhccCcHHH
Confidence 6655441 2334444333 346777777777788887776433333333344455555445555554443 12223
Q ss_pred HHH-HHhcccCCcchHHHHHHHHHcCCC
Q 007573 194 RAL-SDYMSFKNVVSWTVMITGYVKNER 220 (597)
Q Consensus 194 ~~~-~~~m~~~~~~~~~~ll~~~~~~g~ 220 (597)
... ...+..++...-...+.++.+.|+
T Consensus 194 ~~~L~~~l~d~~~~vR~~A~~aL~~~~~ 221 (280)
T 1oyz_A 194 RDCFVEMLQDKNEEVRIEAIIGLSYRKD 221 (280)
T ss_dssp HHHHHHHTTCSCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHhCC
Confidence 322 222233444444444455555543
No 265
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=83.11 E-value=11 Score=27.41 Aligned_cols=85 Identities=15% Similarity=0.061 Sum_probs=56.2
Q ss_pred hHHHHHHHHHHHHhCCCCcccHHHHHHHHHHhcCCHHHHHHHHhccCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 007573 320 LNEGRQSHVLVIRNGFEANVSVCNAVITMYSRCGGILDSELAFRQIHSPNLVSWNTIIAAFAQHGHYEKALIFFSQMGLN 399 (597)
Q Consensus 320 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 399 (597)
.++|..+-+.+...+. ...+--.-+..+...|++++|..+.+....||...|-++-. .+.|-.+++...+.++..+
T Consensus 22 HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce--~rlGl~s~le~rL~~la~s 97 (115)
T 2uwj_G 22 HEEALCIAEWLERLGQ--DEAARLIRISSLANQGRYQEALAFAHGNPWPALEPWFALCE--WHLGLGAALDRRLAGLGGS 97 (115)
T ss_dssp HHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHGGGTTCCCGGGHHHHHHHH--HHTTCHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCCCchHHHHHHHHH--HhcccHHHHHHHHHHHHhC
Confidence 4455545444444432 22222222345667899999999999998999999987754 4678888888888888777
Q ss_pred CCCCChHHHH
Q 007573 400 GFDPDGITFL 409 (597)
Q Consensus 400 g~~p~~~~~~ 409 (597)
| .|....|.
T Consensus 98 g-~p~~q~Fa 106 (115)
T 2uwj_G 98 S-DPALADFA 106 (115)
T ss_dssp S-SHHHHHHH
T ss_pred C-CHHHHHHH
Confidence 6 55555554
No 266
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=82.68 E-value=12 Score=27.35 Aligned_cols=85 Identities=14% Similarity=0.108 Sum_probs=55.5
Q ss_pred hHHHHHHHHHHHHhCCCCcccHHHHHHHHHHhcCCHHHHHHHHhccCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 007573 320 LNEGRQSHVLVIRNGFEANVSVCNAVITMYSRCGGILDSELAFRQIHSPNLVSWNTIIAAFAQHGHYEKALIFFSQMGLN 399 (597)
Q Consensus 320 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 399 (597)
.++|.-+-+.+...+. ...+--.-+..+...|++++|..+.+....||...|-++-. .+.|-.+++...+.++..+
T Consensus 23 HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce--~rlGl~s~le~rL~~la~s 98 (116)
T 2p58_C 23 HEEANCIAEWLHLKGE--EEAVQLIRLSSLMNRGDYASALQQGNKLAYPDLEPWLALCE--YRLGLGSALESRLNRLARS 98 (116)
T ss_dssp HHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHHHHTTSCCGGGHHHHHHHH--HHHTCHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCCCchHHHHHHHHH--HhcccHHHHHHHHHHHHhC
Confidence 4455544444444432 22222222345667899999999999999999999988755 4568888888888788776
Q ss_pred CCCCChHHHH
Q 007573 400 GFDPDGITFL 409 (597)
Q Consensus 400 g~~p~~~~~~ 409 (597)
| .|....|.
T Consensus 99 g-~p~~q~Fa 107 (116)
T 2p58_C 99 Q-DPRIQTFV 107 (116)
T ss_dssp C-CHHHHHHH
T ss_pred C-CHHHHHHH
Confidence 6 55555554
No 267
>2qx5_A Nucleoporin NIC96; mRNA transport, nuclear pore complex, nucleus, protein transport, translocation, transport, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2rfo_A
Probab=82.15 E-value=49 Score=34.09 Aligned_cols=82 Identities=7% Similarity=0.032 Sum_probs=42.1
Q ss_pred HHHHHHHHcCChhHHHHHHHHhHHCCCCCCHHHHHHHHHHHhccchhHHHHHHHHHHHHhCCCCcccHHHHHHHHHHh--
Q 007573 274 AMIAGYAQNGVAEEALRLFSGMIKMDMQPDDATLVSVFTACSALQLLNEGRQSHVLVIRNGFEANVSVCNAVITMYSR-- 351 (597)
Q Consensus 274 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-- 351 (597)
.....+.-.|+++.|++.+-+. ...+.+++...+..+.-.+- ...++..- .+ .| ..-+..||..|.+
T Consensus 299 lYf~vLlLtgqFE~AI~~L~~~----~~vdAVH~AIaL~~~gLL~~---~~~lls~~--~~-~~-~lN~arLI~~Yt~~F 367 (661)
T 2qx5_A 299 YYLQTLLLSGLYGLAIDYTYTF----SEMDAVHLAIGLASLKLFKI---DSSTRLTK--KP-KR-DIRFANILANYTKSF 367 (661)
T ss_dssp CHHHHHHHTTCHHHHHHHHHTT----CHHHHHHHHHHHHHTTC------------------------CHHHHHHHHHTTT
T ss_pred HHHHHHHHHhhHHHHHHHHHhc----CchhHHHHHHHHHHcCCccC---CCcccccC--CC-cc-cccHHHHHHHHHHHh
Confidence 3555666789999999887654 35566666666655443332 11111100 00 11 2225566666654
Q ss_pred -cCCHHHHHHHHhccC
Q 007573 352 -CGGILDSELAFRQIH 366 (597)
Q Consensus 352 -~g~~~~A~~~~~~~~ 366 (597)
..+...|.+.|-.+.
T Consensus 368 ~~td~~~Al~Y~~li~ 383 (661)
T 2qx5_A 368 RYSDPRVAVEYLVLIT 383 (661)
T ss_dssp TTTCHHHHHHHHHGGG
T ss_pred hcCCHHHHHHHHHHHh
Confidence 466777777665553
No 268
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=80.68 E-value=8.5 Score=29.96 Aligned_cols=62 Identities=13% Similarity=0.149 Sum_probs=47.4
Q ss_pred HHHHHHHHHHHHHCCCCCChHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChHHHHHHHH
Q 007573 386 YEKALIFFSQMGLNGFDPDGITFLSLLSACGHAGKVNESMDLFELMVKVYGIIPSSEHYTCLVD 449 (597)
Q Consensus 386 ~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~ 449 (597)
.-+..+-++.+....+-|++......+.+|.+.+++..|.++|+-++.+ ..+...+|..+++
T Consensus 69 ~wElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K--~~~~~~iY~y~lq 130 (152)
T 2y69_E 69 AWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK--AGPHKEIYPYVIQ 130 (152)
T ss_dssp HHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--TTTCTTHHHHHHH
T ss_pred HHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHh--cCCchhhHHHHHH
Confidence 3455666666767778899999999999999999999999999988764 3444556776663
No 269
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=80.22 E-value=19 Score=30.40 Aligned_cols=53 Identities=21% Similarity=0.122 Sum_probs=35.9
Q ss_pred cCCHHHHHHHHHHHHhcC--CCCCchHHHHHHHHHhcCCcHHHHHHHHHHHhCCC
Q 007573 486 NLNVELGELAAKKMRELD--PQNSAVYVMLSNLYAAAGMWRDVTRVRLLMKEQGV 538 (597)
Q Consensus 486 ~g~~~~a~~~~~~~~~~~--p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 538 (597)
.++...+..+|..+...+ -..+..|...+..+...|++++|.++|+.-.+.+.
T Consensus 92 ~~~~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~~A 146 (202)
T 3esl_A 92 SNNFHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAENNC 146 (202)
T ss_dssp TTCHHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC
T ss_pred ccccCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC
Confidence 344567777777776544 33466677777777778888888887777666554
No 270
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=80.12 E-value=7.7 Score=40.70 Aligned_cols=51 Identities=10% Similarity=-0.011 Sum_probs=38.2
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcC
Q 007573 470 EADTGVWGSLLAACVINLNVELGELAAKKMRELDPQNSAVYVMLSNLYAAAG 521 (597)
Q Consensus 470 ~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 521 (597)
+-+..-|..|+....+.+.+++|++.|+..+... -++.....|+..|.+.+
T Consensus 610 kks~lEWEiLGlla~RL~h~~EA~~a~~~~l~~R-Fs~ka~~kLLeiY~~~~ 660 (754)
T 4gns_B 610 KHSGLEWELLGLIMLRTWHWEDAVACLRTSIVAR-FDPVSCQQLLKIYLQPP 660 (754)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHSSS-CCHHHHHHHHHHHHSCC
T ss_pred ccCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhc-cCHHHHHHHHHHHHhcC
Confidence 3456678888888888888888888888887643 45677778888887766
No 271
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=79.42 E-value=40 Score=31.28 Aligned_cols=182 Identities=10% Similarity=0.032 Sum_probs=101.6
Q ss_pred HHHHcCCCh---HHHHHHHhhcCCCCCCchHHHHHHHHHHhcCCHHHHHHHHhhcCCCChhHHHHHHHHHHHcCChhHHH
Q 007573 213 TGYVKNERF---CEARELFYRMPDYDKNVFVVTAMITGFCKVGMLENARLLFERIQPKDCVSFNAMIAGYAQNGVAEEAL 289 (597)
Q Consensus 213 ~~~~~~g~~---~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 289 (597)
+.....|++ =+|.+.++ ++..-|.+.+++++|++++-.- ...+.+.|+...+-
T Consensus 20 ~~~I~~G~y~~~YEAHQ~~R-------------Ti~~Ry~~~k~y~eAidLL~~G-----------A~~ll~~~Q~~sg~ 75 (336)
T 3lpz_A 20 QRRIAEGQPEEQYEAAQETR-------------LVAARYSKQGNWAAAVDILASV-----------SQTLLRSGQGGSGG 75 (336)
T ss_dssp HHHHHHCCHHHHHHHHHHHH-------------HHHHHHHHTTCHHHHHHHHHHH-----------HHHHHHTTCHHHHH
T ss_pred HHHHhCCCCccccHHHHHHH-------------HHHHHHHhhcCHHHHHHHHHHH-----------HHHHHHCCCcchHH
Confidence 344556666 55555443 4556677788888888776432 22344556554444
Q ss_pred HH----HHHhHHCCCCCCHHHHHHHHHHHhccch-----hHHHHHHHHHHHHhC--CCCcccHHHHHHHHHHhcCCHHHH
Q 007573 290 RL----FSGMIKMDMQPDDATLVSVFTACSALQL-----LNEGRQSHVLVIRNG--FEANVSVCNAVITMYSRCGGILDS 358 (597)
Q Consensus 290 ~~----~~~m~~~g~~p~~~~~~~ll~~~~~~~~-----~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A 358 (597)
++ ++-..+.++++|......++..+..... ..-.......-.+.| ...++.....+...|.+.+++.+|
T Consensus 76 DL~~llvevy~~~~~~~~~~~~~rL~~L~~~~~~~~p~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~A 155 (336)
T 3lpz_A 76 DLAVLLVDTFRQAGQRVDGASRGKLLGCLRLFQPGEPVRKRFVKEMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFEAA 155 (336)
T ss_dssp HHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHHHH
Confidence 33 3444556777777766666666554332 111222233333444 234677888899999999999999
Q ss_pred HHHHhccCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHhccCcHHHHHHHHHHhHH
Q 007573 359 ELAFRQIHSPNLVSWNTIIAAFAQHGHYEKALIFFSQMGLNGFDPDGITFLSLLSACGHAGKVNESMDLFELMVK 433 (597)
Q Consensus 359 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 433 (597)
+..|-.-..+.+..+..++.-+...+...++ +...-..++ -|.-.+++..|..+++...+
T Consensus 156 e~H~ilg~~~s~~~~a~mL~ew~~~~~~~e~--------------dlfiaRaVL-~yL~l~n~~~A~~~~~~f~~ 215 (336)
T 3lpz_A 156 EKHLVLGTKESPEVLARMEYEWYKQDESHTA--------------PLYCARAVL-PYLLVANVRAANTAYRIFTS 215 (336)
T ss_dssp HHHHTTSCTTHHHHHHHHHHHHHHTSCGGGH--------------HHHHHHHHH-HHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHhcCCchHHHHHHHHHHHHHhcCCccH--------------HHHHHHHHH-HHHHhCCHHHHHHHHHHHHH
Confidence 9888432233335665555444433322211 111122222 34456778888877666554
No 272
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=79.32 E-value=4.5 Score=36.04 Aligned_cols=58 Identities=17% Similarity=0.192 Sum_probs=43.4
Q ss_pred HHHhhcCCHHHHHHHHhh-CCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC
Q 007573 449 DILSRAGQLEKAWQITQG-MPFEA-DTGVWGSLLAACVINLNVELGELAAKKMRELDPQN 506 (597)
Q Consensus 449 ~~~~~~g~~~~A~~~~~~-~~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~ 506 (597)
..+.+.|++++|++.... +...| |...-..|+..++-.|++++|.+-++...+++|..
T Consensus 5 ~~ll~~g~L~~al~~~~~~VR~~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~~ 64 (273)
T 1zbp_A 5 KNALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEY 64 (273)
T ss_dssp HHHTTTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGG
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchh
Confidence 345678888888877654 33445 56666777788888888888888888888888875
No 273
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=79.32 E-value=16 Score=26.70 Aligned_cols=60 Identities=12% Similarity=0.133 Sum_probs=42.3
Q ss_pred HHHHHhcCCHHHHHHHHhhcCCCChhHHHHHHHHHHHcCChhHHHHHHHHhHHCCCCCCHHHH
Q 007573 245 ITGFCKVGMLENARLLFERIQPKDCVSFNAMIAGYAQNGVAEEALRLFSGMIKMDMQPDDATL 307 (597)
Q Consensus 245 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~ 307 (597)
+..+...|++++|..+.+...-||...|-.|-. .+.|..+++..-+.++..+| .|....|
T Consensus 47 ~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce--~rlGl~s~le~rL~~la~sg-~p~~q~F 106 (116)
T 2p58_C 47 LSSLMNRGDYASALQQGNKLAYPDLEPWLALCE--YRLGLGSALESRLNRLARSQ-DPRIQTF 106 (116)
T ss_dssp HHHHHHTTCHHHHHHHHTTSCCGGGHHHHHHHH--HHHTCHHHHHHHHHHHTTCC-CHHHHHH
T ss_pred HHHHHcchhHHHHHHhcCCCCCchHHHHHHHHH--HhcccHHHHHHHHHHHHhCC-CHHHHHH
Confidence 345667888888888888888888888877654 46677777777776776665 4444444
No 274
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=78.13 E-value=43 Score=31.01 Aligned_cols=167 Identities=12% Similarity=0.058 Sum_probs=102.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHhccCCCChhhHHHHHHHHHHcCCHHHHHHHH----HHHHHCCCCCChHHHHHHHHHHh
Q 007573 341 VCNAVITMYSRCGGILDSELAFRQIHSPNLVSWNTIIAAFAQHGHYEKALIFF----SQMGLNGFDPDGITFLSLLSACG 416 (597)
Q Consensus 341 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~----~~m~~~g~~p~~~~~~~ll~~~~ 416 (597)
+|.++..=|.+.+++++|++++..- ...+.+.|+...|.++- +-..+.++++|......++..+.
T Consensus 37 ~~RTi~~Ry~~~k~y~eAidLL~~G-----------A~~ll~~~Q~~sg~DL~~llvevy~~~~~~~~~~~~~rL~~L~~ 105 (336)
T 3lpz_A 37 ETRLVAARYSKQGNWAAAVDILASV-----------SQTLLRSGQGGSGGDLAVLLVDTFRQAGQRVDGASRGKLLGCLR 105 (336)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHH-----------HHHHHHTTCHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhhcCHHHHHHHHHHH-----------HHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 3445566678889999998876432 34456677776655544 55556788888888888877776
Q ss_pred ccCc--HHHHHHHHHHhHH---hcC--CCCChHHHHHHHHHHhhcCCHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCH
Q 007573 417 HAGK--VNESMDLFELMVK---VYG--IIPSSEHYTCLVDILSRAGQLEKAWQITQGMPFEADTGVWGSLLAACVINLNV 489 (597)
Q Consensus 417 ~~g~--~~~a~~~~~~~~~---~~~--~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~ 489 (597)
.... ++. ..+.+.+++ .+| -.-++.....+...|.+.+++.+|+..|-- ...+.+..+..++.-+...+.
T Consensus 106 ~~~~~~p~r-~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~il-g~~~s~~~~a~mL~ew~~~~~- 182 (336)
T 3lpz_A 106 LFQPGEPVR-KRFVKEMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFEAAEKHLVL-GTKESPEVLARMEYEWYKQDE- 182 (336)
T ss_dssp TSCTTCHHH-HHHHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHTT-SCTTHHHHHHHHHHHHHHTSC-
T ss_pred hCCCCCcHH-HHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHh-cCCchHHHHHHHHHHHHHhcC-
Confidence 5542 221 122222211 123 233577888899999999999999998842 223334666666655544432
Q ss_pred HHHHHHHHHHHhcCCCCCchH-HHHHHHHHhcCCcHHHHHHHHHHHh
Q 007573 490 ELGELAAKKMRELDPQNSAVY-VMLSNLYAAAGMWRDVTRVRLLMKE 535 (597)
Q Consensus 490 ~~a~~~~~~~~~~~p~~~~~~-~~l~~~~~~~g~~~~A~~~~~~~~~ 535 (597)
|.....| ....--|...++...|..+++...+
T Consensus 183 --------------~~e~dlfiaRaVL~yL~l~n~~~A~~~~~~f~~ 215 (336)
T 3lpz_A 183 --------------SHTAPLYCARAVLPYLLVANVRAANTAYRIFTS 215 (336)
T ss_dssp --------------GGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred --------------CccHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 2222222 2233446677889999888777665
No 275
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=77.71 E-value=15 Score=26.78 Aligned_cols=60 Identities=15% Similarity=0.121 Sum_probs=43.9
Q ss_pred HHHHHhcCCHHHHHHHHhhcCCCChhHHHHHHHHHHHcCChhHHHHHHHHhHHCCCCCCHHHH
Q 007573 245 ITGFCKVGMLENARLLFERIQPKDCVSFNAMIAGYAQNGVAEEALRLFSGMIKMDMQPDDATL 307 (597)
Q Consensus 245 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~ 307 (597)
+..+...|++++|..+.+...-||...|-.|-. .+.|..+++..-+.++..+| .|....|
T Consensus 46 ~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce--~rlGl~s~le~rL~~la~sg-~p~~q~F 105 (115)
T 2uwj_G 46 ISSLANQGRYQEALAFAHGNPWPALEPWFALCE--WHLGLGAALDRRLAGLGGSS-DPALADF 105 (115)
T ss_dssp HHHHHHTTCHHHHHGGGTTCCCGGGHHHHHHHH--HHTTCHHHHHHHHHHHHTCS-SHHHHHH
T ss_pred HHHHHcchhHHHHHHhcCCCCCchHHHHHHHHH--HhcccHHHHHHHHHHHHhCC-CHHHHHH
Confidence 345677888999988888888888888877654 47787888887777777665 4444444
No 276
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=71.82 E-value=11 Score=36.85 Aligned_cols=60 Identities=5% Similarity=-0.014 Sum_probs=32.4
Q ss_pred HHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCC--hHHHHHHHHHHhhcCCHHHHHHHHhhC
Q 007573 407 TFLSLLSACGHAGKVNESMDLFELMVKVYGIIPS--SEHYTCLVDILSRAGQLEKAWQITQGM 467 (597)
Q Consensus 407 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~ 467 (597)
+...+...+.+.|+++.|.+.+.++... ...+. ...+-..+..+...+++..+...++++
T Consensus 133 ~~~~la~~~~~~Gd~~~A~~~~~~~~~~-~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka 194 (429)
T 4b4t_R 133 AWINLGEYYAQIGDKDNAEKTLGKSLSK-AISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAV 194 (429)
T ss_dssp CCHHHHHHHHHHCCCTTHHHHHHHHHHH-HTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHh-cCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 4445555566666666666666665543 22222 344555555555666666655555544
No 277
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=71.02 E-value=28 Score=25.56 Aligned_cols=46 Identities=9% Similarity=0.128 Sum_probs=36.7
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHH
Q 007573 469 FEADTGVWGSLLAACVINLNVELGELAAKKMRELDPQNSAVYVMLS 514 (597)
Q Consensus 469 ~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~ 514 (597)
.-|++.+..+.+.+|.+.+|+..|+++++-+...-.+...+|-.++
T Consensus 41 lVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K~~~~~~iY~~~l 86 (109)
T 1v54_E 41 LVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAGPHKEIYPYVI 86 (109)
T ss_dssp BCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCTTHHHHHH
T ss_pred cCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCchhhHHHHH
Confidence 6789999999999999999999999999988765444455565554
No 278
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=70.95 E-value=39 Score=27.10 Aligned_cols=48 Identities=10% Similarity=0.003 Sum_probs=35.9
Q ss_pred HHHHHHHHHhcCC--CCCchHHHHHHHHHhcCCcHHHHHHHHHHHhCCCc
Q 007573 492 GELAAKKMRELDP--QNSAVYVMLSNLYAAAGMWRDVTRVRLLMKEQGVT 539 (597)
Q Consensus 492 a~~~~~~~~~~~p--~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 539 (597)
+..+|..+...+. ..+..|...+..+...|++++|.++|+.-.+.+.+
T Consensus 84 p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~ 133 (152)
T 4a1g_A 84 LHQFFEFLYNHGIGTLSSPLYIAWAGHLEAQGELQHASAVLQRGIQNQAE 133 (152)
T ss_dssp HHHHHHHHHTTTTTTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCB
T ss_pred HHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCc
Confidence 6777777776544 44667788888888888888888888887776643
No 279
>3mv2_A Coatomer subunit alpha; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_A
Probab=70.22 E-value=45 Score=30.58 Aligned_cols=61 Identities=3% Similarity=-0.055 Sum_probs=44.8
Q ss_pred HHhhCCCCCCH--HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCcHHHHHHHHHHHhCC
Q 007573 463 ITQGMPFEADT--GVWGSLLAACVINLNVELGELAAKKMRELDPQNSAVYVMLSNLYAAAGMWRDVTRVRLLMKEQG 537 (597)
Q Consensus 463 ~~~~~~~~p~~--~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 537 (597)
+|-....+|.. .++..-+....+.+++..|..+.+++++++|... ..++|.+++....+.+
T Consensus 195 YFT~c~LQp~H~~LaLr~AM~~a~K~KNy~tAa~fArrLLel~p~~~--------------~a~qArkil~~ce~~~ 257 (325)
T 3mv2_A 195 YFTKAKLSPIHRTNALQVAMSQHFKHKNFLQASYFAGEFLKIISSGP--------------RAEQARKIKNKADSMA 257 (325)
T ss_dssp HGGGSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSSH--------------HHHHHHHHHHHHHTSC
T ss_pred HhccCCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCHH--------------HHHHHHHHHHHHhcCC
Confidence 34455556643 3677777888999999999999999999998632 3456788877766543
No 280
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=65.07 E-value=55 Score=26.63 Aligned_cols=48 Identities=10% Similarity=0.016 Sum_probs=35.4
Q ss_pred HHHHHHHHHhcC--CCCCchHHHHHHHHHhcCCcHHHHHHHHHHHhCCCc
Q 007573 492 GELAAKKMRELD--PQNSAVYVMLSNLYAAAGMWRDVTRVRLLMKEQGVT 539 (597)
Q Consensus 492 a~~~~~~~~~~~--p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 539 (597)
+..+|..+...+ -..+..|...+..+...|++.+|.++|+.-++.+.+
T Consensus 79 p~~if~~L~~~~IG~~~AlfY~~wA~~lE~~~~~~~A~~Iy~~Gi~~~A~ 128 (164)
T 2wvi_A 79 PLDMYSYLHNQGIGVSLAQFYISWAEEYEARENFRKADAIFQEGIQQKAE 128 (164)
T ss_dssp HHHHHHHHHHTTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCB
T ss_pred HHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC
Confidence 556777777654 444667788888888888888888888887776643
No 281
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=64.10 E-value=21 Score=34.78 Aligned_cols=108 Identities=10% Similarity=-0.024 Sum_probs=74.6
Q ss_pred ccHHHHHHHHHHhcCCHHHHHHHHhccC------CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHH---CCCCCChHHH-
Q 007573 339 VSVCNAVITMYSRCGGILDSELAFRQIH------SPNLVSWNTIIAAFAQHGHYEKALIFFSQMGL---NGFDPDGITF- 408 (597)
Q Consensus 339 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~------~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~---~g~~p~~~~~- 408 (597)
..+...+.+.|.+.|+++.|.+.+.++. ..-...+-..+..+...+++..+...+.+... .+-.|+...-
T Consensus 131 ~~~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~l 210 (429)
T 4b4t_R 131 AQAWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNRY 210 (429)
T ss_dssp SSCCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHHH
Confidence 3467788999999999999999998886 12245677788888899999999999988753 3333333321
Q ss_pred -HHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChHHHHHH
Q 007573 409 -LSLLSACGHAGKVNESMDLFELMVKVYGIIPSSEHYTCL 447 (597)
Q Consensus 409 -~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l 447 (597)
..-...+...+++..|...|-+....+. ..+...+...
T Consensus 211 k~~~gl~~l~~r~f~~Aa~~f~e~~~t~~-~~e~~~~~~~ 249 (429)
T 4b4t_R 211 KTYYGIHCLAVRNFKEAAKLLVDSLATFT-SIELTSYESI 249 (429)
T ss_dssp HHHHHHGGGGTSCHHHHHHHHHHHHHHSC-CSCHHHHHHH
T ss_pred HHHHHHHHHHhChHHHHHHHHHHHhccCC-ccchhhHHHH
Confidence 1222334567889999999998887643 2334444443
No 282
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=62.64 E-value=70 Score=27.01 Aligned_cols=57 Identities=16% Similarity=0.122 Sum_probs=40.8
Q ss_pred cCCHHHHHHHHHHHHHCCCCCC-hHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCC
Q 007573 383 HGHYEKALIFFSQMGLNGFDPD-GITFLSLLSACGHAGKVNESMDLFELMVKVYGIIPS 440 (597)
Q Consensus 383 ~g~~~~A~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~ 440 (597)
.+...++.++|..|...|+.-. +.-|......+...|++++|.++|+.-++. +-.|-
T Consensus 92 ~~~~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~-~A~P~ 149 (202)
T 3esl_A 92 SNNFHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAEN-NCRPY 149 (202)
T ss_dssp TTCHHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT-TCBSH
T ss_pred ccccCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc-CCccH
Confidence 3446688888888888776665 445666667777788888888888887775 55554
No 283
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=62.42 E-value=95 Score=28.46 Aligned_cols=169 Identities=10% Similarity=-0.035 Sum_probs=102.3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHhccCCCChhhHHHHHHHHHHcCCHHHHHHH----HHHHHHCCCCCChHHHHHHHHHHh
Q 007573 341 VCNAVITMYSRCGGILDSELAFRQIHSPNLVSWNTIIAAFAQHGHYEKALIF----FSQMGLNGFDPDGITFLSLLSACG 416 (597)
Q Consensus 341 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~----~~~m~~~g~~p~~~~~~~ll~~~~ 416 (597)
.|.++..=|.+.+++++|.+++... ...+.++|+...|.++ ++-..+.+++++......++..+.
T Consensus 35 ~~Rtl~~Ry~~~~~~~eAidlL~~g-----------a~~ll~~~Q~~sa~DLa~llvev~~~~~~~~~~~~~~rl~~l~~ 103 (312)
T 2wpv_A 35 TLRTIANRYVRSKSYEHAIELISQG-----------ALSFLKAKQGGSGTDLIFYLLEVYDLAEVKVDDISVARLVRLIA 103 (312)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHH-----------HHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHH-----------HHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 3455566677888888888876432 3455667887666654 555566788889888888877765
Q ss_pred ccCcHH-HHHHHHHHhHH---hcCC--CCChHHHHHHHHHHhhcCCHHHHHHHHhhCCCCCCHHHHHHHHHHHHhc---C
Q 007573 417 HAGKVN-ESMDLFELMVK---VYGI--IPSSEHYTCLVDILSRAGQLEKAWQITQGMPFEADTGVWGSLLAACVIN---L 487 (597)
Q Consensus 417 ~~g~~~-~a~~~~~~~~~---~~~~--~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~---g 487 (597)
.-..-+ .=.++.+.+.+ ..+- .-++.....+...|.+.|++.+|+..|-.-. .-|...+..++.-+... |
T Consensus 104 ~~p~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~i~~~-~~s~~~~a~~l~~w~~~~~~~ 182 (312)
T 2wpv_A 104 ELDPSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERYFMLGT-HDSMIKYVDLLWDWLCQVDDI 182 (312)
T ss_dssp TCCTTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHHTSC-HHHHHHHHHHHHHHHHHTTCC
T ss_pred HCCCCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHhCC-CccHHHHHHHHHHHHHhcCCC
Confidence 532111 11222222221 1122 2367888889999999999999999776321 11355565555554444 4
Q ss_pred CHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCcHHHHHHHHHHHh
Q 007573 488 NVELGELAAKKMRELDPQNSAVYVMLSNLYAAAGMWRDVTRVRLLMKE 535 (597)
Q Consensus 488 ~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 535 (597)
...++--++- ...--|...|+...|..+++...+
T Consensus 183 ~~~e~dlf~~--------------RaVL~yL~l~n~~~A~~~~~~f~~ 216 (312)
T 2wpv_A 183 EDSTVAEFFS--------------RLVFNYLFISNISFAHESKDIFLE 216 (312)
T ss_dssp CHHHHHHHHH--------------HHHHHHHHTTBHHHHHHHHHHHHH
T ss_pred CcchHHHHHH--------------HHHHHHHHhcCHHHHHHHHHHHHH
Confidence 4433322221 122335567889999998887754
No 284
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=60.29 E-value=59 Score=25.39 Aligned_cols=47 Identities=9% Similarity=0.121 Sum_probs=37.8
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHH
Q 007573 468 PFEADTGVWGSLLAACVINLNVELGELAAKKMRELDPQNSAVYVMLS 514 (597)
Q Consensus 468 ~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~ 514 (597)
..-|++.+..+-+.+|.+.+|+..|+++++-+...-.+...+|-.++
T Consensus 83 DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K~~~~~~iY~y~l 129 (152)
T 2y69_E 83 DLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAGPHKEIYPYVI 129 (152)
T ss_dssp SBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCTTHHHHHH
T ss_pred ccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCCchhhHHHHH
Confidence 36799999999999999999999999999998865444455565554
No 285
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=55.45 E-value=1.1e+02 Score=26.93 Aligned_cols=15 Identities=20% Similarity=0.536 Sum_probs=6.5
Q ss_pred HhcCCHHHHHHHHhh
Q 007573 249 CKVGMLENARLLFER 263 (597)
Q Consensus 249 ~~~g~~~~A~~~~~~ 263 (597)
++.|+.+-...+++.
T Consensus 113 ~~~~~~~~~~~Ll~~ 127 (285)
T 1wdy_A 113 AVYGKVKALKFLYKR 127 (285)
T ss_dssp HHTTCHHHHHHHHHT
T ss_pred HHhCCHHHHHHHHHh
Confidence 344444444444433
No 286
>3eiq_C Programmed cell death protein 4; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Mus musculus}
Probab=51.66 E-value=1.6e+02 Score=27.64 Aligned_cols=232 Identities=9% Similarity=0.067 Sum_probs=0.0
Q ss_pred HHHHHHHHhCCChhHHHHHHhhCCCC--CcchHHHHHHHHHcCCChHH--HHHHHccCCCCChhhHHHHHHHHHcCCChH
Q 007573 85 NAIITGYWQNGFLQESKNLFQSMPVK--NIVSWNCMIAGCIDNDRIDD--AFDYFQAMPERNTATYNAMISGFLKHGRLE 160 (597)
Q Consensus 85 ~~li~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~ll~~~~~~~~~~~--A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 160 (597)
..+|.-|...|+.++|...++++..+ .......++......++.+. +-.++..+. .+..+-..+..++ .
T Consensus 58 ~~ii~EYf~~~d~~Ea~~~l~eL~~p~~~~~~v~~~I~~aLdr~~~erE~~s~LLs~L~-~~~ls~~~i~~gf------~ 130 (358)
T 3eiq_C 58 TPIIQEYFEHGDTNEVAEMLRDLNLGEMKSGVPVLAVSLALEGKASHREMTSKLLSDLC-GTVMSTNDVEKSF------D 130 (358)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHTTTCCGGGGGHHHHHHHHHTTSCHHHHHHHHHHHHTTT-TTSCCHHHHHHHH------H
T ss_pred HHHHHHHhcCCCHHHHHHHHHHhCCchhHHHHHHHHHHHHhcCChHHHHHHHHHHHHHH-hCCCCHHHHHHHH------H
Q ss_pred HHHHHHccCCCCCchhHHHHHHHHHhC-----------------CChhHHHHHHHhc--ccCCcchHHHHHHHHHcCCCh
Q 007573 161 EATRLFEQMPRRNVISYTAMLDGFMKK-----------------GEVDKARALSDYM--SFKNVVSWTVMITGYVKNERF 221 (597)
Q Consensus 161 ~A~~~~~~~~~~~~~~~~~li~~~~~~-----------------g~~~~A~~~~~~m--~~~~~~~~~~ll~~~~~~g~~ 221 (597)
...+.++++.---+.++..+....++. -.-+.+.+.+++. .-........+-+.+...|..
T Consensus 131 ~lle~ldDl~lDiP~a~~~la~flaRaV~d~~l~~~~l~~~~~~~~~~~~~~~l~~a~~~L~~~~~~~~~~~~WG~g~~~ 210 (358)
T 3eiq_C 131 KLLKDLPELALDTPRAPQLVGQFIARAVGDGILCNTYIDSYKGTVDCVQARAALDKATVLLSMSKGGKRKDSVWGSGGGQ 210 (358)
T ss_dssp HHHHTHHHHHHHCTTHHHHHHHHHHHHHHTTCSCSSTTGGGC---CCHHHHHHHHHHHHHHTC---------CCCCCCSS
T ss_pred HHHHhhhhhccccccHHHHHHHHHHHHHHhCCCCHHHHHHHhhcccchHHHHHHHHHHHHHhccchHHHHHHhcCCCCCC
Q ss_pred HHHHHHHhhcCCCCCCchHHHHHHHHHHhcCCHHHHHHHHhhcCCC---ChhHHHHHHHHHHHcC--ChhHHHHHHHHhH
Q 007573 222 CEARELFYRMPDYDKNVFVVTAMITGFCKVGMLENARLLFERIQPK---DCVSFNAMIAGYAQNG--VAEEALRLFSGMI 296 (597)
Q Consensus 222 ~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g--~~~~A~~~~~~m~ 296 (597)
....++-+.+.. ++.-|...|+.++|.+.++++..+ .......+..++-+.+ ..+.+..++..+.
T Consensus 211 ~~veelkkki~~----------lL~EY~~s~D~~EA~~ci~EL~~p~fhhe~V~~av~~aLE~~~~~~re~~~~LL~~L~ 280 (358)
T 3eiq_C 211 QPVNHLVKEIDM----------LLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIVMVLESTGESAFKMILDLLKSLW 280 (358)
T ss_dssp SCHHHHHHHHHH----------HHHHHHHHCCHHHHHHHHHHHCCTTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHH----------HHHHhccCCCHHHHHHHHHHccCCcchHHHHHHHHHHHHccCchHHHHHHHHHHHHHH
Q ss_pred HCCCCCCHHHHHHHHHHHhccchhH----HHHHHHHHHHHh
Q 007573 297 KMDMQPDDATLVSVFTACSALQLLN----EGRQSHVLVIRN 333 (597)
Q Consensus 297 ~~g~~p~~~~~~~ll~~~~~~~~~~----~a~~~~~~~~~~ 333 (597)
..|+-+.......+...+....++. .|..++..+...
T Consensus 281 ~~glls~~q~~~Gf~~vl~~ldDl~lDiP~A~~~la~~var 321 (358)
T 3eiq_C 281 KSSTITIDQMKRGYERIYNEIPDINLDVPHSYSVLERFVEE 321 (358)
T ss_dssp HTTCSCHHHHHHHHHHHHHHHHHHHHHCTTHHHHHHHHHHH
T ss_pred HCCCCCHHHHHHHHHHHHHhccHhhcccccHHHHHHHHHHH
No 287
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=51.51 E-value=82 Score=24.35 Aligned_cols=65 Identities=12% Similarity=0.228 Sum_probs=40.9
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhhcCCCCh---hHHHHHHHHHHHcCC--hhHHHHHHHHhHHCCCCCCHH
Q 007573 241 VTAMITGFCKVGMLENARLLFERIQPKDC---VSFNAMIAGYAQNGV--AEEALRLFSGMIKMDMQPDDA 305 (597)
Q Consensus 241 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~---~~~~~li~~~~~~g~--~~~A~~~~~~m~~~g~~p~~~ 305 (597)
...++.-|...|+.++|.+.++++..+.- .....+..++-+.++ .+.+..++..+...|+-+...
T Consensus 10 i~~ll~EY~~~~D~~Ea~~cl~eL~~p~f~~e~V~~~i~~alE~~~~~~~e~~~~LL~~L~~~~~is~~q 79 (129)
T 2nsz_A 10 IDMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITIDQ 79 (129)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHTCGGGHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHhCCCccHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcCHHH
Confidence 35667777788888888888888765522 234444455555432 356677777777777555443
No 288
>3mkr_B Coatomer subunit alpha; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=49.10 E-value=1.1e+02 Score=28.05 Aligned_cols=61 Identities=11% Similarity=0.073 Sum_probs=44.4
Q ss_pred HHhhCCCCCCHH--HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCcHHHHHHHHHHHhCC
Q 007573 463 ITQGMPFEADTG--VWGSLLAACVINLNVELGELAAKKMRELDPQNSAVYVMLSNLYAAAGMWRDVTRVRLLMKEQG 537 (597)
Q Consensus 463 ~~~~~~~~p~~~--~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 537 (597)
+|-....+|... ++..-+....+.+++.-|-.+.+++++++|... ..++|.+++....+.+
T Consensus 186 YFT~c~Lqp~H~~LaLr~AM~~a~K~KNy~tAa~fArrLLel~p~~~--------------~~~qArkil~~ce~~~ 248 (320)
T 3mkr_B 186 YFTHSNLQPVHMILVLRTALNLFFKLKNFRTAAAFARRLLELGPKPE--------------VAQQTRKILSACEKNP 248 (320)
T ss_dssp HHTTSCCCHHHHHHHHHHHHHHHHHTTBHHHHHHHHHHHHHTCCCHH--------------HHHHHHHHHHHHHHSC
T ss_pred HhccCCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCHH--------------HHHHHHHHHHHHhcCC
Confidence 444555566433 667777888999999999999999999988622 2456778877776654
No 289
>3bqo_A Telomeric repeat-binding factor 1; TRF1 TRFH domain dimerization domain TIN2, ADP-ribosylation, alternative splicing, cell cycle, cell division; 2.00A {Homo sapiens} SCOP: a.146.1.1 PDB: 3l82_A 1h6o_A
Probab=48.87 E-value=58 Score=27.26 Aligned_cols=65 Identities=18% Similarity=0.085 Sum_probs=35.5
Q ss_pred HHHHHHHHhhCCCCCCH--HHH-----HHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcC
Q 007573 457 LEKAWQITQGMPFEADT--GVW-----GSLLAACVINLNVELGELAAKKMRELDPQNSAVYVMLSNLYAAAG 521 (597)
Q Consensus 457 ~~~A~~~~~~~~~~p~~--~~~-----~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 521 (597)
++.|+.+++.+...-+. ... ...+..|.+.|.+++|.+++++..+.++.+...-..|+..-.+..
T Consensus 94 LESAl~v~~~I~~e~~~lheei~~Llk~qAV~VCiekg~Fk~A~eiLkr~f~~~~~~~~lr~kL~~II~~Kd 165 (211)
T 3bqo_A 94 LESALMIWGSIEKEHDKLHEEIQNLIKIQAIAVCMENGNFKEAEEVFERIFGDPNSHMPFKSKLLMIISQKD 165 (211)
T ss_dssp HHHHHHHHTTSCSCCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHC-----CCTTHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHhcCCCCchHHHHHHHHHHHccC
Confidence 45666666666522221 111 223356889999999999999988877766554444444444433
No 290
>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1
Probab=44.71 E-value=2.2e+02 Score=27.24 Aligned_cols=203 Identities=15% Similarity=0.065 Sum_probs=94.6
Q ss_pred HHHHHHhcCChHHHHHHHhhcCCCCcc--hHHHHHHHHHhCCChhHHHHHHhhCCCC---CcchHHHHHHHHHcCCChHH
Q 007573 56 KISALSRAGKISAARQLFDQMTTKDVI--TWNAIITGYWQNGFLQESKNLFQSMPVK---NIVSWNCMIAGCIDNDRIDD 130 (597)
Q Consensus 56 l~~~~~~~g~~~~A~~~~~~~~~~~~~--~~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~ll~~~~~~~~~~~ 130 (597)
.+..-++.|+++....+++.-..++.. ...+.+...+..|+.+-+..+++.-... +....+. +...+..|+.+-
T Consensus 17 ~L~~Aa~~g~~~~v~~Ll~~g~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~-L~~A~~~g~~~~ 95 (437)
T 1n11_A 17 PLHVASFMGHLPIVKNLLQRGASPNVSNVKVETPLHMAARAGHTEVAKYLLQNKAKVNAKAKDDQTP-LHCAARIGHTNM 95 (437)
T ss_dssp HHHHHHHHTCHHHHHHHHHTTCCSCCSSSCCCCHHHHHHHHTCHHHHHHHHHHTCCSSCCCTTSCCH-HHHHHHHTCHHH
T ss_pred HHHHHHHCCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCCH-HHHHHHCCCHHH
Confidence 344556778888888888764443322 1122344445667777776666654332 2222222 233345566665
Q ss_pred HHHHHccCCCCC---hhhHHHHHHHHHcCCChHHHHHHHccCCCC---CchhHHHHHHHHHhCCChhHHHHHHHhcccCC
Q 007573 131 AFDYFQAMPERN---TATYNAMISGFLKHGRLEEATRLFEQMPRR---NVISYTAMLDGFMKKGEVDKARALSDYMSFKN 204 (597)
Q Consensus 131 A~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 204 (597)
+.-+++.-..++ ..-.+ .+...++.|+.+-...+++.-... +..-++ .+...+..|+.+-+.-+++.-..++
T Consensus 96 v~~Ll~~ga~~~~~~~~g~t-~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t-~L~~A~~~g~~~~v~~Ll~~g~~~~ 173 (437)
T 1n11_A 96 VKLLLENNANPNLATTAGHT-PLHIAAREGHVETVLALLEKEASQACMTKKGFT-PLHVAAKYGKVRVAELLLERDAHPN 173 (437)
T ss_dssp HHHHHHHTCCTTCCCTTCCC-HHHHHHHHTCHHHHHHHHHTTCCSCCCCTTSCC-HHHHHHHTTCHHHHHHHHHTTCCTT
T ss_pred HHHHHhCCCCCCCCCCCCCc-HHHHHHHcCCHHHHHHHHhCCCCCcCCCCCCCC-HHHHHHHcCCHHHHHHHHhCCCCCC
Confidence 555555433221 11122 233445567777777776654321 111111 2333455666665555555433222
Q ss_pred c---chHHHHHHHHHcCCChHHHHHHHhhcCCCC-CCchHHHHHHHHHHhcCCHHHHHHHHhh
Q 007573 205 V---VSWTVMITGYVKNERFCEARELFYRMPDYD-KNVFVVTAMITGFCKVGMLENARLLFER 263 (597)
Q Consensus 205 ~---~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 263 (597)
. ... +.+...+..|+.+-...+++.-.... ++.. ..+.+...++.|+.+-+..+++.
T Consensus 174 ~~~~~g~-t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~-g~t~L~~A~~~~~~~~~~~Ll~~ 234 (437)
T 1n11_A 174 AAGKNGL-TPLHVAVHHNNLDIVKLLLPRGGSPHSPAWN-GYTPLHIAAKQNQVEVARSLLQY 234 (437)
T ss_dssp CCCSSCC-CHHHHHHHTTCHHHHHHHGGGTCCSCCCCTT-CCCHHHHHHHTTCHHHHHHHHHT
T ss_pred CCCCCCC-CHHHHHHHcCCHHHHHHHHhCCCCCCCcCCC-CCCHHHHHHHcCCHHHHHHHHHc
Confidence 1 111 22333445566655555544332211 1111 11223344456666666555554
No 291
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=43.81 E-value=1.3e+02 Score=25.82 Aligned_cols=48 Identities=13% Similarity=0.107 Sum_probs=32.4
Q ss_pred HHHHHHHHHHhcC--CCCCchHHHHHHHHHhcCCcHHHHHHHHHHHhCCC
Q 007573 491 LGELAAKKMRELD--PQNSAVYVMLSNLYAAAGMWRDVTRVRLLMKEQGV 538 (597)
Q Consensus 491 ~a~~~~~~~~~~~--p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 538 (597)
....+|..+...+ -..+..|...+..+...|++++|.++|+.-++.+.
T Consensus 132 ~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A 181 (223)
T 4aez_C 132 EPVELFSFLAHHHIGQESSIFYEEYANYFESRGLFQKADEVYQKGKRMKA 181 (223)
T ss_dssp CHHHHHHHHHHTTCSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTC
T ss_pred CHHHHHHHHHHCCcchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC
Confidence 4556666666544 33466677777777788888888888777666554
No 292
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=42.50 E-value=75 Score=25.44 Aligned_cols=65 Identities=12% Similarity=0.228 Sum_probs=40.2
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhhcCCCCh---hHHHHHHHHHHHcCC--hhHHHHHHHHhHHCCCCCCHH
Q 007573 241 VTAMITGFCKVGMLENARLLFERIQPKDC---VSFNAMIAGYAQNGV--AEEALRLFSGMIKMDMQPDDA 305 (597)
Q Consensus 241 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~---~~~~~li~~~~~~g~--~~~A~~~~~~m~~~g~~p~~~ 305 (597)
...++.-|...|+.++|.+.++++..+.- .....+..++-+.++ .+.+..++..+...|+-+...
T Consensus 12 i~~lL~EY~~~~D~~EA~~cl~EL~~p~f~~e~V~~~i~~alE~~~~~~re~~~~LL~~L~~~~~is~~q 81 (152)
T 2ion_A 12 IDMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITIDQ 81 (152)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHTCGGGHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCHHH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcCHHH
Confidence 45677777778888888888888765522 234444445554322 345667777777766554443
No 293
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=41.73 E-value=1e+02 Score=23.75 Aligned_cols=64 Identities=13% Similarity=0.311 Sum_probs=39.6
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhccCCCCh---hhHHHHHHHHHHcCC--HHHHHHHHHHHHHCCCCCCh
Q 007573 342 CNAVITMYSRCGGILDSELAFRQIHSPNL---VSWNTIIAAFAQHGH--YEKALIFFSQMGLNGFDPDG 405 (597)
Q Consensus 342 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~---~~~~~li~~~~~~g~--~~~A~~~~~~m~~~g~~p~~ 405 (597)
.+.++.-|...|+.++|.+.++++..|.. .+...+..++-+.++ .+.+..++..+...|+-+..
T Consensus 10 i~~ll~EY~~~~D~~Ea~~cl~eL~~p~f~~e~V~~~i~~alE~~~~~~~e~~~~LL~~L~~~~~is~~ 78 (129)
T 2nsz_A 10 IDMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITID 78 (129)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHTCGGGHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHhCCCccHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcCHH
Confidence 35577778888889999888888875532 223333334433332 35677777777776654433
No 294
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=41.20 E-value=1.1e+02 Score=30.39 Aligned_cols=62 Identities=16% Similarity=0.236 Sum_probs=45.3
Q ss_pred hhHHHHHHHHHhCCChhHHHHHHHhcccCCc-c------hH-HHHHHHHHcCCChHHHHHHHhhcCCCCC
Q 007573 175 ISYTAMLDGFMKKGEVDKARALSDYMSFKNV-V------SW-TVMITGYVKNERFCEARELFYRMPDYDK 236 (597)
Q Consensus 175 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~-~------~~-~~ll~~~~~~g~~~~a~~~~~~~~~~~~ 236 (597)
..+|.+++.|...+.++.|..+..+...|.. . +| .-+.+.+.-.+++.+|.+.+..+.+..|
T Consensus 232 ~l~nllLRnYL~~~~y~qA~~lvsk~~fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~rkap 301 (523)
T 4b4t_S 232 MLINLILRDFLNNGEVDSASDFISKLEYPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAIRKAP 301 (523)
T ss_dssp HHHHHHHHHHHHSSCSTTHHHHHHHHCSCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTSSCS
T ss_pred HHHHHHHHHHHccCcHHHHHHHHhcCcCCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC
Confidence 4578888889999999999999988866632 1 22 2345666778899999888888766433
No 295
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=41.15 E-value=83 Score=27.45 Aligned_cols=87 Identities=14% Similarity=0.082 Sum_probs=44.4
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHC--CCCC----ChHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChHHHHHHHH
Q 007573 376 IIAAFAQHGHYEKALIFFSQMGLN--GFDP----DGITFLSLLSACGHAGKVNESMDLFELMVKVYGIIPSSEHYTCLVD 449 (597)
Q Consensus 376 li~~~~~~g~~~~A~~~~~~m~~~--g~~p----~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~ 449 (597)
-++.+....++++|++++++..+. +.++ +.......+..-.....-.-+..+.+.+ . . .+++......+.
T Consensus 24 eLDv~IA~r~feeAv~lle~~~~~l~~~~~~~~~~~~~~~~~l~~ki~eR~~~L~~~L~~~l-~--~-~~~~~~~r~~v~ 99 (235)
T 2d2s_A 24 EIDIELARLRFESAVETLLDIESQLEDLSERISDEELMLLNLISLKIEQRREAISSKLSQSI-L--S-SNEIVHLKSGTE 99 (235)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTC-------CHHHHHHHHHHHHHHHHHHHHHHHHH-H--T-CSSHHHHHHHHH
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHhCcccccccchHHHHHHHHHHHHHHHHHHHHHHHHH-H--h-cCCHHHHHHHHH
Confidence 355666677777777777665431 2221 1111122222222222222333333333 1 1 445555666778
Q ss_pred HHhhcCCHHHHHHHHhh
Q 007573 450 ILSRAGQLEKAWQITQG 466 (597)
Q Consensus 450 ~~~~~g~~~~A~~~~~~ 466 (597)
.+.+.|+.++|.++|-+
T Consensus 100 ~L~rLg~~~~A~~lfL~ 116 (235)
T 2d2s_A 100 NMIKLGLPEQALDLFLQ 116 (235)
T ss_dssp HHHHTTCHHHHHHHHHH
T ss_pred HHHHCCChhHHHHHHHH
Confidence 88888888888887743
No 296
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=40.78 E-value=1.4e+02 Score=23.90 Aligned_cols=53 Identities=9% Similarity=0.148 Sum_probs=39.5
Q ss_pred HHHHHHHHHHHHCCCCCC-hHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCC
Q 007573 387 EKALIFFSQMGLNGFDPD-GITFLSLLSACGHAGKVNESMDLFELMVKVYGIIPS 440 (597)
Q Consensus 387 ~~A~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~ 440 (597)
+++.++|..|...|+.-. +.-|......+...|++++|.++|+.-++. +-.|-
T Consensus 82 ~dp~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~-~A~P~ 135 (152)
T 4a1g_A 82 SDLHQFFEFLYNHGIGTLSSPLYIAWAGHLEAQGELQHASAVLQRGIQN-QAEPR 135 (152)
T ss_dssp SCHHHHHHHHHTTTTTTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT-TCBSH
T ss_pred CCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc-CCccH
Confidence 347888888888887665 445666777777888888888888888775 55554
No 297
>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}
Probab=39.83 E-value=1.4e+02 Score=27.79 Aligned_cols=86 Identities=13% Similarity=0.014 Sum_probs=35.6
Q ss_pred HHcCCChHHHHHHHhhcCCCCCCchHHHHHHHHHHhcCCHHHHHHHHhhcCCCChhHHHHHHHHHHHcCChhHHHHHHHH
Q 007573 215 YVKNERFCEARELFYRMPDYDKNVFVVTAMITGFCKVGMLENARLLFERIQPKDCVSFNAMIAGYAQNGVAEEALRLFSG 294 (597)
Q Consensus 215 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 294 (597)
.+..|+.+....+++.-...........+.+...+..|+.+-+..+++.-...+...-.+.+...+..|+.+-+..+++.
T Consensus 27 Aa~~g~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ 106 (364)
T 3ljn_A 27 AARKGQTDEVRRLIETGVSPTIQNRFGCTALHLACKFGCVDTAKYLASVGEVHSLWHGQKPIHLAVMANKTDLVVALVEG 106 (364)
T ss_dssp HHHHTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHCCHHHHHHHHHHCCCCCCBTTBCHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHcCCCccccCCCCCcHHHHHHHcCCHHHHHHHHHCCCCccccCCCCHHHHHHHcCCHHHHHHHHHh
Confidence 33455555555555542221110111122333444556666555555544332221111122233445665555555554
Q ss_pred hHHCCC
Q 007573 295 MIKMDM 300 (597)
Q Consensus 295 m~~~g~ 300 (597)
....|.
T Consensus 107 ~~~~~~ 112 (364)
T 3ljn_A 107 AKERGQ 112 (364)
T ss_dssp HHHHTC
T ss_pred ccccCC
Confidence 333333
No 298
>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16
Probab=38.81 E-value=56 Score=25.04 Aligned_cols=17 Identities=0% Similarity=-0.411 Sum_probs=6.6
Q ss_pred CcchHHHHHHHHHcCCC
Q 007573 204 NVVSWTVMITGYVKNER 220 (597)
Q Consensus 204 ~~~~~~~ll~~~~~~g~ 220 (597)
+...-...+.++.+.|+
T Consensus 55 ~~~vR~~A~~aL~~~~~ 71 (131)
T 1te4_A 55 DWRIRGAAAWIIGNFQD 71 (131)
T ss_dssp CHHHHHHHHHHHGGGCS
T ss_pred CHHHHHHHHHHHHhcCC
Confidence 33333333444444443
No 299
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=36.64 E-value=1.9e+02 Score=25.06 Aligned_cols=23 Identities=13% Similarity=-0.117 Sum_probs=15.7
Q ss_pred HHHHHHHcCChhHHHHHHHHhHH
Q 007573 275 MIAGYAQNGVAEEALRLFSGMIK 297 (597)
Q Consensus 275 li~~~~~~g~~~~A~~~~~~m~~ 297 (597)
-++.+....++++|+.++++..+
T Consensus 24 eLDv~IA~r~feeAv~lle~~~~ 46 (235)
T 2d2s_A 24 EIDIELARLRFESAVETLLDIES 46 (235)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhHHHHHHHHHHHHH
Confidence 45667777777777777776543
No 300
>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1
Probab=35.24 E-value=1.2e+02 Score=30.02 Aligned_cols=50 Identities=16% Similarity=0.052 Sum_probs=28.4
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCcHHHHHH
Q 007573 480 LAACVINLNVELGELAAKKMRELDPQNSAVYVMLSNLYAAAGMWRDVTRV 529 (597)
Q Consensus 480 ~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~ 529 (597)
+....-....+.|...|.++..+.|.+...|+.|+-+....|+.-+|.-.
T Consensus 159 GDL~RY~~~~~~A~~~Y~~A~~~~P~~G~~~nqLavla~~~~~~l~a~y~ 208 (497)
T 1ya0_A 159 GDIARYRNQTSQAESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTIFY 208 (497)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTTBSHHHHHHHHHHHHTTCHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHhcccccHHHHHH
Confidence 33333444555666666666666666666666666666665555544433
No 301
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=34.32 E-value=1.9e+02 Score=23.50 Aligned_cols=53 Identities=11% Similarity=0.161 Sum_probs=38.8
Q ss_pred HHHHHHHHHHHCCCCCC-hHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCCh
Q 007573 388 KALIFFSQMGLNGFDPD-GITFLSLLSACGHAGKVNESMDLFELMVKVYGIIPSS 441 (597)
Q Consensus 388 ~A~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~ 441 (597)
.+.++|..|...|+.-. +..|......+...|++.+|.++|+.-++. +-.|-.
T Consensus 78 ~p~~if~~L~~~~IG~~~AlfY~~wA~~lE~~~~~~~A~~Iy~~Gi~~-~A~P~~ 131 (164)
T 2wvi_A 78 EPLDMYSYLHNQGIGVSLAQFYISWAEEYEARENFRKADAIFQEGIQQ-KAEPLE 131 (164)
T ss_dssp CHHHHHHHHHHTTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT-TCBSHH
T ss_pred CHHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc-CCCcHH
Confidence 36678888888887665 445666667777888888888888888775 556653
No 302
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=33.51 E-value=99 Score=24.73 Aligned_cols=64 Identities=13% Similarity=0.311 Sum_probs=39.2
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhccCCCCh---hhHHHHHHHHHHcCC--HHHHHHHHHHHHHCCCCCCh
Q 007573 342 CNAVITMYSRCGGILDSELAFRQIHSPNL---VSWNTIIAAFAQHGH--YEKALIFFSQMGLNGFDPDG 405 (597)
Q Consensus 342 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~---~~~~~li~~~~~~g~--~~~A~~~~~~m~~~g~~p~~ 405 (597)
.+.++.-|...|+.++|.+.++++..|.. .+...+..++-+.++ .+.+..++..+...|+-+..
T Consensus 12 i~~lL~EY~~~~D~~EA~~cl~EL~~p~f~~e~V~~~i~~alE~~~~~~re~~~~LL~~L~~~~~is~~ 80 (152)
T 2ion_A 12 IDMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITID 80 (152)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHTCGGGHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCHH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcCHH
Confidence 45677778888888999888888875532 233333334433222 34567777777766644433
No 303
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=33.07 E-value=2e+02 Score=24.77 Aligned_cols=53 Identities=9% Similarity=0.192 Sum_probs=37.1
Q ss_pred HHHHHHHHHHHHCCCCCC-hHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCC
Q 007573 387 EKALIFFSQMGLNGFDPD-GITFLSLLSACGHAGKVNESMDLFELMVKVYGIIPS 440 (597)
Q Consensus 387 ~~A~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~ 440 (597)
+++.++|..|...|+.-. +..|......+...|++.+|.++|+.-++. +-.|-
T Consensus 131 ~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~-~A~P~ 184 (223)
T 4aez_C 131 DEPVELFSFLAHHHIGQESSIFYEEYANYFESRGLFQKADEVYQKGKRM-KAKPF 184 (223)
T ss_dssp SCHHHHHHHHHHTTCSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-TCBSH
T ss_pred CCHHHHHHHHHHCCcchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc-CCccH
Confidence 466678888887776665 445666666777778888888888877765 55553
No 304
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=32.87 E-value=2.5e+02 Score=24.46 Aligned_cols=19 Identities=16% Similarity=0.385 Sum_probs=10.6
Q ss_pred HHHHHhcCCHHHHHHHHhh
Q 007573 245 ITGFCKVGMLENARLLFER 263 (597)
Q Consensus 245 ~~~~~~~g~~~~A~~~~~~ 263 (597)
+...++.|+.+-...+++.
T Consensus 152 L~~A~~~~~~~~v~~Ll~~ 170 (285)
T 1wdy_A 152 LMDAAEKGHVEVLKILLDE 170 (285)
T ss_dssp HHHHHHHTCHHHHHHHHHT
T ss_pred HHHHHHcCCHHHHHHHHHh
Confidence 3344456666666666654
No 305
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=32.86 E-value=1e+02 Score=30.53 Aligned_cols=59 Identities=17% Similarity=0.180 Sum_probs=29.7
Q ss_pred HHHHHHHHHHhccCcHHHHHHHHHHhHHhcCC--CCCh--HH-HHHHHHHHhhcCCHHHHHHHHhh
Q 007573 406 ITFLSLLSACGHAGKVNESMDLFELMVKVYGI--IPSS--EH-YTCLVDILSRAGQLEKAWQITQG 466 (597)
Q Consensus 406 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~--~p~~--~~-~~~l~~~~~~~g~~~~A~~~~~~ 466 (597)
..++.+++.|...+.++.|..+..+.. +.. .++. .. +-.++..+.-.+++.+|.+.+..
T Consensus 232 ~l~nllLRnYL~~~~y~qA~~lvsk~~--fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~ 295 (523)
T 4b4t_S 232 MLINLILRDFLNNGEVDSASDFISKLE--YPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIA 295 (523)
T ss_dssp HHHHHHHHHHHHSSCSTTHHHHHHHHC--SCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCcHHHHHHHHhcCc--CCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHH
Confidence 345566666666666666666665442 110 0111 11 12234555566666666666554
No 306
>2r9g_A AAA ATPase, central region; structural genomics, PSI-2, protein structure initia YORK SGX research center for structural genomics, nysgxrc; 2.09A {Enterococcus faecium} SCOP: a.80.1.2 PDB: 2qw6_A
Probab=32.54 E-value=2.2e+02 Score=23.89 Aligned_cols=39 Identities=15% Similarity=0.197 Sum_probs=29.6
Q ss_pred HHcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHhccCc
Q 007573 381 AQHGHYEKALIFFSQMGLNGFDPDGITFLSLLSACGHAGK 420 (597)
Q Consensus 381 ~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~ 420 (597)
.+..+++.|+-++-+|.+.| .|....-..++.+...-|.
T Consensus 25 iRGSDpDAAly~LaRml~~G-Dp~~IaRRLvi~AsEDIGl 63 (204)
T 2r9g_A 25 IRGSDVDAALHYLARLVEAG-DLASICRRLMVIGYEDIGL 63 (204)
T ss_dssp HHTTCHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHTTGG
T ss_pred HhcCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhhccC
Confidence 45789999999999999999 7766666666666655553
No 307
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=31.22 E-value=1.8e+02 Score=31.76 Aligned_cols=103 Identities=8% Similarity=0.046 Sum_probs=57.7
Q ss_pred HHHHHHhCCChhHHHHHHHhcccCCcchHHHHHHHHHcCCChHHHHHHHhhcCC-C--------------------CCC-
Q 007573 180 MLDGFMKKGEVDKARALSDYMSFKNVVSWTVMITGYVKNERFCEARELFYRMPD-Y--------------------DKN- 237 (597)
Q Consensus 180 li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~-~--------------------~~~- 237 (597)
++..+...|.++-|.++..... .+...-..+..+|...|++++|...|+++.. + +++
T Consensus 816 l~~~L~~~~~~~~a~eL~~~~~-~t~~~~yv~gr~~L~~ge~~~A~~~F~kAA~gl~~~~~~~~~~~~~~~ll~~~e~~~ 894 (950)
T 4gq2_M 816 LVEKLFLFKQYNACMQLIGWLN-SDPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEKYHHQN 894 (950)
T ss_dssp HHHHHHHTTCHHHHHHHGGGCC-SSHHHHHHHHHHHHHTTCHHHHHHHHHTCCCTTCSSCCSCGGGHHHHHHHHHTTTCS
T ss_pred HHHHHHHhcHHHHHHHHHhhcC-CChHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcccCcccccchhhhhhccCcccccc
Confidence 4455555666665554443332 2333333455566666666666666665532 1 011
Q ss_pred --chHHHHHHHHHHhcCCHHHHHHHHhh----cCCCCh----hHHHHHHHHHHHcC
Q 007573 238 --VFVVTAMITGFCKVGMLENARLLFER----IQPKDC----VSFNAMIAGYAQNG 283 (597)
Q Consensus 238 --~~~~~~l~~~~~~~g~~~~A~~~~~~----~~~~~~----~~~~~li~~~~~~g 283 (597)
..-|..++..+-+.+.++-+.++-+. +...|. ..|+.+.++.+..|
T Consensus 895 ~~~~YY~hV~~LFE~~~a~~~vi~fA~lAI~~~~~dd~~l~~~l~~r~f~~a~a~g 950 (950)
T 4gq2_M 895 LLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAG 950 (950)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCSCCHHHHHHHHHHHHHHHHHHC
T ss_pred hhHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHhhCC
Confidence 12467788888888888877665543 333343 36777777766544
No 308
>3ygs_P Procaspase 9; apoptosis, caspase activation, caspase recruitment, recognition complex; 2.50A {Homo sapiens} SCOP: a.77.1.3
Probab=31.17 E-value=59 Score=23.63 Aligned_cols=38 Identities=18% Similarity=0.132 Sum_probs=29.3
Q ss_pred CChHHHHHHHhhcCCCCcchHHHHHHHHHhCCChhHHH
Q 007573 64 GKISAARQLFDQMTTKDVITWNAIITGYWQNGFLQESK 101 (597)
Q Consensus 64 g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 101 (597)
...+.|.++++.++++++.+|..++.++...|+..-|.
T Consensus 51 t~~~~ar~Lld~L~~rG~~Af~~F~~aL~et~~~~La~ 88 (97)
T 3ygs_P 51 SRRDQARQLIIDLETRGSQALPLFISCLEDTGQDMLAS 88 (97)
T ss_dssp CHHHHHHHHHHHHTTSCTTHHHHHHHHHHTTTCHHHHH
T ss_pred ChHHHHHHHHHHHHHcChHHHHHHHHHHHHcCcHHHHH
Confidence 46788888888888888888888888887667665553
No 309
>2r9g_A AAA ATPase, central region; structural genomics, PSI-2, protein structure initia YORK SGX research center for structural genomics, nysgxrc; 2.09A {Enterococcus faecium} SCOP: a.80.1.2 PDB: 2qw6_A
Probab=28.83 E-value=2.6e+02 Score=23.50 Aligned_cols=63 Identities=8% Similarity=0.150 Sum_probs=41.4
Q ss_pred HHHHHHHHH---HcCChhHHHHHHHHhHHCCCCCCHHHHHHHHHHHhccch-----hHHHHHHHHHHHHhCC
Q 007573 272 FNAMIAGYA---QNGVAEEALRLFSGMIKMDMQPDDATLVSVFTACSALQL-----LNEGRQSHVLVIRNGF 335 (597)
Q Consensus 272 ~~~li~~~~---~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~-----~~~a~~~~~~~~~~~~ 335 (597)
+-.+|+++. +..+++.|+-.+-+|++.| .|....-..++.+....|. +..+...++.....|.
T Consensus 14 HYd~iSAf~KSiRGSDpDAAly~LaRml~~G-Dp~~IaRRLvi~AsEDIGlAdP~Al~~a~aa~~a~~~iG~ 84 (204)
T 2r9g_A 14 HYDVISAFQKSIRGSDVDAALHYLARLVEAG-DLASICRRLMVIGYEDIGLGNPAAAARTVNAVLAAEKLGL 84 (204)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHTTGGGCHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHhCC
Confidence 334555554 4689999999999999999 7777766677766655553 2233344444455554
No 310
>3ygs_P Procaspase 9; apoptosis, caspase activation, caspase recruitment, recognition complex; 2.50A {Homo sapiens} SCOP: a.77.1.3
Probab=28.13 E-value=80 Score=22.90 Aligned_cols=38 Identities=16% Similarity=0.184 Sum_probs=28.4
Q ss_pred CCHHHHHHHHhhcCCCChhHHHHHHHHHHHcCChhHHH
Q 007573 252 GMLENARLLFERIQPKDCVSFNAMIAGYAQNGVAEEAL 289 (597)
Q Consensus 252 g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 289 (597)
...+.|.++++.++.+.+.+|..++.++...|+..-|.
T Consensus 51 t~~~~ar~Lld~L~~rG~~Af~~F~~aL~et~~~~La~ 88 (97)
T 3ygs_P 51 SRRDQARQLIIDLETRGSQALPLFISCLEDTGQDMLAS 88 (97)
T ss_dssp CHHHHHHHHHHHHTTSCTTHHHHHHHHHHTTTCHHHHH
T ss_pred ChHHHHHHHHHHHHHcChHHHHHHHHHHHHcCcHHHHH
Confidence 35778888888888888888888888887666655543
No 311
>3bge_A Predicted ATPase; structural genomics, predicted AAA+ATPase C-terminal fragmen protein structure initiative; 1.85A {Haemophilus influenzae} SCOP: a.80.1.2
Probab=26.00 E-value=2.6e+02 Score=23.43 Aligned_cols=39 Identities=21% Similarity=0.209 Sum_probs=29.3
Q ss_pred HHcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHhccC
Q 007573 381 AQHGHYEKALIFFSQMGLNGFDPDGITFLSLLSACGHAG 419 (597)
Q Consensus 381 ~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g 419 (597)
.+..+++.|+-++-+|++.|-.|....-..++.+...-|
T Consensus 18 iRGSDpDAAly~LaRMl~~GEDp~~IaRRLvi~AsEDIG 56 (201)
T 3bge_A 18 VRGSAPDAALYWYARILTAGGDPLYVARRLLAIASEDVG 56 (201)
T ss_dssp HHTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTG
T ss_pred HhCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhcc
Confidence 457899999999999999987777666555555554444
No 312
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=25.29 E-value=1.4e+02 Score=23.42 Aligned_cols=36 Identities=8% Similarity=-0.030 Sum_probs=15.4
Q ss_pred CcHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcC
Q 007573 419 GKVNESMDLFELMVKVYGIIPSSEHYTCLVDILSRAG 455 (597)
Q Consensus 419 g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g 455 (597)
+..-.|.++++.+.+. +...+..|...-++.+...|
T Consensus 35 ~~~~sa~ei~~~l~~~-~~~is~aTVYR~L~~L~e~G 70 (145)
T 2fe3_A 35 MAHPTADDIYKALEGK-FPNMSVATVYNNLRVFRESG 70 (145)
T ss_dssp SSCCCHHHHHHHHGGG-CTTCCHHHHHHHHHHHHHTT
T ss_pred CCCCCHHHHHHHHHHh-CCCCChhhHHHHHHHHHHCC
Confidence 3344455555555443 32333333333334444444
No 313
>3ctd_A Putative ATPase, AAA family; structural genomics, unknown function, PSI-2, protein structure initiative; 2.50A {Prochlorococcus marinus subsp} SCOP: a.80.1.2
Probab=25.24 E-value=3.1e+02 Score=23.22 Aligned_cols=39 Identities=28% Similarity=0.370 Sum_probs=30.3
Q ss_pred HHcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHhccC
Q 007573 381 AQHGHYEKALIFFSQMGLNGFDPDGITFLSLLSACGHAG 419 (597)
Q Consensus 381 ~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g 419 (597)
.+..+++.|+-++-+|++.|-.|....-..++.+...-|
T Consensus 46 iRGSDpDAALywLaRMl~~GEDp~~IaRRLvi~AsEDIG 84 (213)
T 3ctd_A 46 IRGSDPDATLYWLANMVEAGEDPNFIFRRLLISACEDIG 84 (213)
T ss_dssp HHTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTG
T ss_pred HhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhcc
Confidence 457899999999999999998887766666666655544
No 314
>3bge_A Predicted ATPase; structural genomics, predicted AAA+ATPase C-terminal fragmen protein structure initiative; 1.85A {Haemophilus influenzae} SCOP: a.80.1.2
Probab=24.55 E-value=3.1e+02 Score=22.97 Aligned_cols=46 Identities=11% Similarity=0.146 Sum_probs=34.0
Q ss_pred HHHHHHHH---HcCChhHHHHHHHHhHHCCCCCCHHHHHHHHHHHhccc
Q 007573 273 NAMIAGYA---QNGVAEEALRLFSGMIKMDMQPDDATLVSVFTACSALQ 318 (597)
Q Consensus 273 ~~li~~~~---~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~ 318 (597)
-.+|+++. +.++++.|+-.+-+|++.|-.|....-..++.+.-..|
T Consensus 8 Yd~ISAf~KSiRGSDpDAAly~LaRMl~~GEDp~~IaRRLvi~AsEDIG 56 (201)
T 3bge_A 8 YDLISALHKSVRGSAPDAALYWYARILTAGGDPLYVARRLLAIASEDVG 56 (201)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTG
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhcc
Confidence 34566654 45889999999999999998887776666666655444
No 315
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=23.92 E-value=7.2e+02 Score=26.95 Aligned_cols=48 Identities=4% Similarity=-0.024 Sum_probs=28.0
Q ss_pred HHHHHHHHHhccchhHHHHHHHHHHHHhCCCCcc----cHHHHHHHHHHhcC
Q 007573 306 TLVSVFTACSALQLLNEGRQSHVLVIRNGFEANV----SVCNAVITMYSRCG 353 (597)
Q Consensus 306 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~g 353 (597)
-|..++..+.+.+..+.+.++-+.+++.--+.|. ..++.+..+.+..|
T Consensus 899 YY~hV~~LFE~~~a~~~vi~fA~lAI~~~~~dd~~l~~~l~~r~f~~a~a~g 950 (950)
T 4gq2_M 899 YYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAG 950 (950)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTCCSCCHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHhhCC
Confidence 3556666666777777777776666654322222 35666666665544
No 316
>3bu8_A Telomeric repeat-binding factor 2; TRF2 TRFH domain TRF2 dimerization domain TIN2 peptide, alternative splicing, cell cycle, chromosomal protein; 2.15A {Homo sapiens} SCOP: a.146.1.1 PDB: 3bua_A* 1h6p_A
Probab=23.82 E-value=2.6e+02 Score=23.77 Aligned_cols=68 Identities=15% Similarity=0.137 Sum_probs=0.0
Q ss_pred HHHHHHHHHHhHHhcCCCCCh------HHHHHHHHHHhhcCCHHHHHHHHhhCC-CCCCHHHHHHHHHHHHhcCC
Q 007573 421 VNESMDLFELMVKVYGIIPSS------EHYTCLVDILSRAGQLEKAWQITQGMP-FEADTGVWGSLLAACVINLN 488 (597)
Q Consensus 421 ~~~a~~~~~~~~~~~~~~p~~------~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p~~~~~~~l~~~~~~~g~ 488 (597)
++.|+.+|+.+.+...+.... ..-...+-.|.+.|.+++|.+++++.- ..|+..-...-+....+.+|
T Consensus 88 LESAl~v~~~I~~e~~l~~~l~e~i~~llk~qAV~VCiek~~f~kA~eiLkr~~~~~~s~~kLr~kL~~II~~Kd 162 (235)
T 3bu8_A 88 LESAINVLEMIKTEFTLTEAVVESSRKLVKEAAVIICIKNKEFEKASKILKKHMSKDPTTQKLRNDLLNIIREKN 162 (235)
T ss_dssp HHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHSTTCGGGHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHhhcCcHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHhcCCCCchHHHHHHHHHHhccC
No 317
>3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi}
Probab=21.62 E-value=3.4e+02 Score=22.28 Aligned_cols=83 Identities=11% Similarity=0.038 Sum_probs=0.0
Q ss_pred HHHHHhhcCCHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh-----------------cCCCC-Cc
Q 007573 447 LVDILSRAGQLEKAWQITQGMPFEADTGVWGSLLAACVINLNVELGELAAKKMRE-----------------LDPQN-SA 508 (597)
Q Consensus 447 l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-----------------~~p~~-~~ 508 (597)
+--.+.-.|.+..++-++.... ...+.---.-++.+.+++..|+..++.+++ .+|.| .-
T Consensus 39 ~~I~LyyngEY~R~Lf~L~~lN---T~Ts~YYk~LCy~klKdYkkA~~~le~il~~kvd~d~~~d~~~~~ffvd~~DkEf 115 (242)
T 3kae_A 39 MSIVLYLNGEYTRALFHLHKLN---TCTSKYYESLCYKKKKDYKKAIKSLESILEGKVERDPDVDARIQEMFVDPGDEEF 115 (242)
T ss_dssp HHHHHHHTTCHHHHHHHHHTCC---BHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSBCCCCCCHHHHTTSCCTTCHHH
T ss_pred hhhhhhhcchHhHHHHHHHhcc---hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCcccccccceeeeccchHHH
Q ss_pred hHHHHHHHHHhcCCcHHHHHHHHH
Q 007573 509 VYVMLSNLYAAAGMWRDVTRVRLL 532 (597)
Q Consensus 509 ~~~~l~~~~~~~g~~~~A~~~~~~ 532 (597)
.+..++..+...|+.+||++.+..
T Consensus 116 Fy~l~a~lltq~g~r~EaI~y~~~ 139 (242)
T 3kae_A 116 FESLLGDLCTLSGYREEGIGHYVR 139 (242)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHhhhHhhh
No 318
>2xig_A Ferric uptake regulation protein; hpfur, transcription, homeostasis; HET: CIT; 1.85A {Helicobacter pylori}
Probab=21.47 E-value=1.9e+02 Score=22.87 Aligned_cols=38 Identities=8% Similarity=0.058 Sum_probs=16.9
Q ss_pred cCcHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCC
Q 007573 418 AGKVNESMDLFELMVKVYGIIPSSEHYTCLVDILSRAGQ 456 (597)
Q Consensus 418 ~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~ 456 (597)
.+..-.|.++++.+.+. +...+..|...-++.+...|-
T Consensus 39 ~~~~~sa~ei~~~l~~~-~~~is~aTVYR~L~~L~e~Gl 76 (150)
T 2xig_A 39 SGTHLSPEEITHSIRQK-DKNTSISSVYRILNFLEKENF 76 (150)
T ss_dssp CSSCBCHHHHHHHHHHH-STTCCHHHHHHHHHHHHHTTS
T ss_pred CCCCCCHHHHHHHHHHh-CCCCCHhhHHHHHHHHHHCCc
Confidence 33444555555555443 333343333333444444443
No 319
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=20.26 E-value=3.5e+02 Score=21.91 Aligned_cols=16 Identities=0% Similarity=0.169 Sum_probs=9.3
Q ss_pred HcCCChHHHHHHHccC
Q 007573 154 LKHGRLEEATRLFEQM 169 (597)
Q Consensus 154 ~~~g~~~~A~~~~~~~ 169 (597)
+..|+.+....++..-
T Consensus 13 ~~~g~~~~v~~ll~~~ 28 (201)
T 3hra_A 13 ANQRDTKKVKEILQDT 28 (201)
T ss_dssp HHTTCHHHHHHHHTCT
T ss_pred HHhccHHHHHHHHHcC
Confidence 4556666666666543
Done!