Query 007574
Match_columns 597
No_of_seqs 445 out of 2182
Neff 6.0
Searched_HMMs 46136
Date Thu Mar 28 12:27:54 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007574.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/007574hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0883 Cyclophilin type, U bo 100.0 6E-150 1E-154 1147.2 28.7 511 1-597 1-518 (518)
2 KOG0881 Cyclophilin type pepti 100.0 3E-50 6.6E-55 358.2 9.1 154 348-501 9-162 (164)
3 cd01923 cyclophilin_RING cyclo 100.0 1.3E-46 2.9E-51 358.3 19.9 159 350-508 1-159 (159)
4 KOG0546 HSP90 co-chaperone CPR 100.0 2.7E-47 5.8E-52 392.6 13.5 159 347-506 9-182 (372)
5 KOG0884 Similar to cyclophilin 100.0 9.1E-47 2E-51 334.2 12.6 158 350-507 2-160 (161)
6 cd01921 cyclophilin_RRM cyclop 100.0 8E-45 1.7E-49 348.3 19.2 157 353-509 2-166 (166)
7 KOG0880 Peptidyl-prolyl cis-tr 100.0 9.4E-45 2E-49 345.9 15.5 155 348-503 41-203 (217)
8 KOG0882 Cyclophilin-related pe 100.0 3.2E-45 7E-50 382.9 12.3 154 348-501 404-557 (558)
9 cd01925 cyclophilin_CeCYP16-li 100.0 1E-43 2.2E-48 342.2 19.5 167 345-511 2-169 (171)
10 cd01928 Cyclophilin_PPIL3_like 100.0 1.5E-43 3.2E-48 335.3 18.1 151 351-501 3-153 (153)
11 cd01927 cyclophilin_WD40 cyclo 100.0 3.2E-43 6.8E-48 331.3 17.4 148 352-499 1-148 (148)
12 COG0652 PpiB Peptidyl-prolyl c 100.0 4.4E-43 9.6E-48 331.1 16.7 148 351-502 2-157 (158)
13 KOG0885 Peptidyl-prolyl cis-tr 100.0 2.4E-43 5.2E-48 361.8 13.5 174 344-517 8-182 (439)
14 cd01922 cyclophilin_SpCYP2_lik 100.0 2.1E-42 4.5E-47 325.1 16.7 144 353-497 2-145 (146)
15 KOG0879 U-snRNP-associated cyc 100.0 5.9E-42 1.3E-46 308.4 9.7 146 355-501 22-176 (177)
16 PLN03149 peptidyl-prolyl isome 100.0 1.9E-39 4.1E-44 316.4 19.4 146 356-502 31-186 (186)
17 PTZ00221 cyclophilin; Provisio 100.0 2.6E-39 5.6E-44 326.1 19.6 153 356-512 65-229 (249)
18 KOG0415 Predicted peptidyl pro 100.0 7.3E-40 1.6E-44 333.6 14.3 162 350-511 2-171 (479)
19 cd01926 cyclophilin_ABH_like c 100.0 3.4E-39 7.3E-44 308.8 17.9 150 349-500 3-164 (164)
20 PRK10903 peptidyl-prolyl cis-t 100.0 1.1E-38 2.5E-43 311.8 19.1 153 347-502 27-189 (190)
21 PRK10791 peptidyl-prolyl cis-t 100.0 1.2E-38 2.7E-43 304.9 18.3 149 351-502 2-163 (164)
22 PTZ00060 cyclophilin; Provisio 100.0 2.6E-38 5.7E-43 307.8 19.2 146 355-502 27-182 (183)
23 KOG0111 Cyclophilin-type pepti 100.0 7.5E-39 1.6E-43 309.2 10.0 145 356-502 149-297 (298)
24 cd01920 cyclophilin_EcCYP_like 100.0 9.7E-38 2.1E-42 296.2 16.3 145 352-499 1-155 (155)
25 cd00317 cyclophilin cyclophili 100.0 2.2E-36 4.7E-41 282.9 17.3 145 353-498 2-146 (146)
26 PF00160 Pro_isomerase: Cyclop 100.0 2.7E-35 5.8E-40 278.0 16.6 149 350-501 1-155 (155)
27 cd01924 cyclophilin_TLP40_like 100.0 6.9E-35 1.5E-39 282.0 16.3 129 354-482 3-165 (176)
28 PF04641 Rtf2: Rtf2 RING-finge 100.0 1.8E-33 3.9E-38 287.9 11.0 145 31-178 26-188 (260)
29 KOG3039 Uncharacterized conser 100.0 8.3E-33 1.8E-37 270.7 9.2 154 4-161 5-280 (303)
30 KOG0865 Cyclophilin type pepti 100.0 2E-31 4.3E-36 253.8 7.1 146 355-502 15-167 (167)
31 KOG3113 Uncharacterized conser 99.9 3.6E-22 7.7E-27 197.0 7.5 118 38-159 33-166 (293)
32 smart00504 Ubox Modified RING 99.2 2.7E-11 5.8E-16 97.3 4.0 62 40-101 2-63 (63)
33 PF04564 U-box: U-box domain; 99.1 1.1E-11 2.3E-16 103.6 1.0 65 38-102 3-68 (73)
34 smart00504 Ubox Modified RING 98.2 1.2E-06 2.6E-11 70.2 4.5 54 100-159 1-54 (63)
35 PF11789 zf-Nse: Zinc-finger o 98.1 1.1E-06 2.3E-11 70.1 2.0 41 40-80 12-55 (57)
36 KOG0289 mRNA splicing factor [ 98.1 1.4E-06 3.1E-11 93.0 2.5 53 41-93 2-55 (506)
37 KOG0882 Cyclophilin-related pe 97.7 5.9E-05 1.3E-09 81.4 5.9 159 343-502 93-262 (558)
38 KOG4642 Chaperone-dependent E3 97.5 1.9E-05 4.2E-10 79.6 -0.4 63 36-98 208-271 (284)
39 KOG0320 Predicted E3 ubiquitin 97.5 6.5E-05 1.4E-09 72.3 3.0 57 98-158 129-185 (187)
40 KOG0978 E3 ubiquitin ligase in 97.5 2.6E-05 5.7E-10 89.0 0.1 55 99-158 642-696 (698)
41 PF04564 U-box: U-box domain; 97.4 0.00023 5E-09 59.4 4.4 55 99-158 3-57 (73)
42 KOG0826 Predicted E3 ubiquitin 97.2 0.00012 2.5E-09 76.4 1.4 54 39-92 300-354 (357)
43 TIGR00570 cdk7 CDK-activating 97.1 0.00029 6.3E-09 73.9 3.3 56 99-156 2-59 (309)
44 PLN03208 E3 ubiquitin-protein 97.1 0.00055 1.2E-08 67.3 4.9 75 38-124 17-91 (193)
45 PF13445 zf-RING_UBOX: RING-ty 97.1 0.00042 9.1E-09 52.2 2.8 41 103-144 1-43 (43)
46 PLN03208 E3 ubiquitin-protein 97.1 0.00079 1.7E-08 66.2 5.2 59 97-159 15-87 (193)
47 PF11789 zf-Nse: Zinc-finger o 96.8 0.0013 2.8E-08 52.6 3.4 47 98-147 9-55 (57)
48 KOG0317 Predicted E3 ubiquitin 96.8 0.00099 2.1E-08 68.7 3.3 59 33-91 233-291 (293)
49 KOG0823 Predicted E3 ubiquitin 96.7 0.0012 2.7E-08 66.1 3.4 56 38-93 46-104 (230)
50 KOG2164 Predicted E3 ubiquitin 96.7 0.001 2.3E-08 73.2 3.0 56 41-96 188-248 (513)
51 KOG0320 Predicted E3 ubiquitin 96.5 0.0018 3.8E-08 62.6 3.0 59 34-92 126-186 (187)
52 PF14634 zf-RING_5: zinc-RING 96.1 0.0055 1.2E-07 46.0 2.9 44 102-148 1-44 (44)
53 PF13923 zf-C3HC4_2: Zinc fing 95.9 0.011 2.3E-07 43.2 4.0 39 103-146 1-39 (39)
54 PF13923 zf-C3HC4_2: Zinc fing 95.9 0.0085 1.9E-07 43.7 3.4 36 42-77 1-37 (39)
55 TIGR03268 methan_mark_3 putati 95.9 0.024 5.2E-07 62.7 8.1 101 360-481 203-303 (503)
56 PRK00969 hypothetical protein; 95.8 0.026 5.7E-07 62.6 7.9 102 359-481 205-306 (508)
57 KOG2164 Predicted E3 ubiquitin 95.6 0.0065 1.4E-07 67.1 2.4 55 100-159 186-244 (513)
58 TIGR00599 rad18 DNA repair pro 95.6 0.0086 1.9E-07 65.3 3.1 34 39-72 26-59 (397)
59 TIGR00599 rad18 DNA repair pro 95.3 0.014 3.1E-07 63.6 3.7 52 98-155 24-75 (397)
60 KOG0317 Predicted E3 ubiquitin 95.3 0.013 2.8E-07 60.6 3.2 56 98-159 237-292 (293)
61 PF13639 zf-RING_2: Ring finge 95.1 0.021 4.5E-07 42.7 2.9 42 102-146 2-43 (44)
62 PF13920 zf-C3HC4_3: Zinc fing 95.1 0.033 7.1E-07 42.8 4.1 46 100-151 2-48 (50)
63 KOG2979 Protein involved in DN 94.8 0.012 2.5E-07 60.1 1.2 33 40-72 177-210 (262)
64 KOG3039 Uncharacterized conser 94.6 0.03 6.5E-07 56.7 3.4 54 39-92 221-278 (303)
65 PF15227 zf-C3HC4_4: zinc fing 94.3 0.046 9.9E-07 40.9 3.1 32 42-73 1-32 (42)
66 PHA02929 N1R/p28-like protein; 94.3 0.035 7.5E-07 56.8 3.3 44 39-82 174-225 (238)
67 PF00097 zf-C3HC4: Zinc finger 94.1 0.064 1.4E-06 39.2 3.6 41 103-146 1-41 (41)
68 COG5574 PEX10 RING-finger-cont 94.1 0.033 7.1E-07 57.1 2.5 51 41-91 217-269 (271)
69 COG4070 Predicted peptidyl-pro 93.4 0.14 3.1E-06 55.1 6.0 98 359-481 204-305 (512)
70 PF12903 DUF3830: Protein of u 93.3 0.17 3.6E-06 48.1 5.6 107 358-481 8-130 (147)
71 cd00162 RING RING-finger (Real 93.3 0.1 2.2E-06 37.7 3.3 44 102-149 1-44 (45)
72 COG5574 PEX10 RING-finger-cont 93.0 0.076 1.6E-06 54.5 3.2 57 98-158 213-269 (271)
73 PF15227 zf-C3HC4_4: zinc fing 93.0 0.13 2.7E-06 38.5 3.5 40 103-146 1-42 (42)
74 PF13639 zf-RING_2: Ring finge 92.9 0.1 2.3E-06 38.8 3.0 39 40-78 1-42 (44)
75 PRK00969 hypothetical protein; 92.4 0.86 1.9E-05 51.0 10.4 117 348-482 50-168 (508)
76 KOG0826 Predicted E3 ubiquitin 92.3 0.052 1.1E-06 57.2 0.8 56 99-159 299-354 (357)
77 TIGR03268 methan_mark_3 putati 91.5 1.4 3E-05 49.3 10.7 116 348-481 46-164 (503)
78 KOG0823 Predicted E3 ubiquitin 91.5 0.22 4.7E-06 50.4 4.2 60 96-159 43-103 (230)
79 PHA02929 N1R/p28-like protein; 91.4 0.17 3.8E-06 51.7 3.5 51 99-151 173-227 (238)
80 KOG2817 Predicted E3 ubiquitin 91.3 0.13 2.9E-06 55.5 2.7 55 100-155 334-389 (394)
81 PF13445 zf-RING_UBOX: RING-ty 91.3 0.22 4.9E-06 37.5 3.1 31 42-73 1-35 (43)
82 COG4070 Predicted peptidyl-pro 90.9 0.71 1.5E-05 50.0 7.5 22 359-380 377-398 (512)
83 COG5109 Uncharacterized conser 90.6 0.14 3.1E-06 53.7 1.9 56 101-157 337-393 (396)
84 PF04641 Rtf2: Rtf2 RING-finge 90.3 0.29 6.3E-06 50.7 4.1 58 38-124 112-173 (260)
85 PF00097 zf-C3HC4: Zinc finger 89.4 0.52 1.1E-05 34.3 3.7 31 42-72 1-32 (41)
86 smart00184 RING Ring finger. E 88.8 0.39 8.4E-06 33.2 2.6 39 103-146 1-39 (39)
87 KOG3800 Predicted E3 ubiquitin 87.6 0.41 8.9E-06 49.9 2.8 59 102-162 2-64 (300)
88 PF13920 zf-C3HC4_3: Zinc fing 87.5 0.8 1.7E-05 35.0 3.8 44 40-83 3-47 (50)
89 KOG2879 Predicted E3 ubiquitin 87.5 0.41 8.9E-06 49.5 2.7 50 99-151 238-287 (298)
90 PF02891 zf-MIZ: MIZ/SP-RING z 87.1 0.39 8.4E-06 37.3 1.8 46 101-149 3-50 (50)
91 PHA02926 zinc finger-like prot 86.1 0.58 1.3E-05 47.2 2.9 54 98-151 168-230 (242)
92 KOG2042 Ubiquitin fusion degra 86.1 0.35 7.5E-06 57.8 1.5 66 38-103 869-935 (943)
93 COG5113 UFD2 Ubiquitin fusion 84.9 0.44 9.6E-06 54.2 1.5 68 34-101 848-917 (929)
94 smart00184 RING Ring finger. E 84.7 1.1 2.4E-05 30.8 3.0 30 42-71 1-30 (39)
95 KOG2177 Predicted E3 ubiquitin 84.4 0.5 1.1E-05 47.4 1.6 45 98-148 11-55 (386)
96 PF02891 zf-MIZ: MIZ/SP-RING z 84.0 1.4 3E-05 34.3 3.5 33 41-73 4-39 (50)
97 cd00162 RING RING-finger (Real 82.9 1.7 3.7E-05 31.0 3.5 38 41-78 1-40 (45)
98 KOG0289 mRNA splicing factor [ 82.9 0.99 2.1E-05 49.5 3.1 57 101-162 1-57 (506)
99 PF06416 DUF1076: Protein of u 82.3 1.3 2.7E-05 40.1 3.0 52 39-90 40-97 (113)
100 KOG0978 E3 ubiquitin ligase in 81.8 0.71 1.5E-05 53.7 1.7 55 39-93 643-698 (698)
101 PF14447 Prok-RING_4: Prokaryo 81.3 0.65 1.4E-05 36.9 0.8 33 119-155 22-54 (55)
102 KOG2177 Predicted E3 ubiquitin 80.8 0.59 1.3E-05 46.9 0.5 34 38-71 12-45 (386)
103 KOG2979 Protein involved in DN 79.5 1.1 2.3E-05 46.2 1.8 56 100-162 176-231 (262)
104 KOG1002 Nucleotide excision re 77.9 0.86 1.9E-05 50.9 0.6 49 41-111 538-586 (791)
105 KOG1813 Predicted E3 ubiquitin 77.7 1.5 3.3E-05 45.9 2.4 45 36-81 239-283 (313)
106 KOG0827 Predicted E3 ubiquitin 77.4 1.7 3.6E-05 47.1 2.6 74 100-185 4-79 (465)
107 COG5432 RAD18 RING-finger-cont 76.5 1.4 3.1E-05 45.9 1.8 48 34-81 19-67 (391)
108 COG5222 Uncharacterized conser 75.5 1.7 3.6E-05 45.6 1.9 48 101-156 275-322 (427)
109 PF12678 zf-rbx1: RING-H2 zinc 75.4 4.2 9E-05 33.9 4.0 41 38-78 18-71 (73)
110 KOG1645 RING-finger-containing 75.2 1.2 2.6E-05 48.4 0.9 58 101-159 5-64 (463)
111 KOG0297 TNF receptor-associate 74.5 2.1 4.5E-05 47.1 2.5 105 40-156 22-131 (391)
112 KOG0396 Uncharacterized conser 74.5 1.7 3.7E-05 46.8 1.7 54 36-89 320-384 (389)
113 PF10367 Vps39_2: Vacuolar sor 73.4 1.5 3.2E-05 38.3 0.9 31 100-132 78-108 (109)
114 KOG0287 Postreplication repair 73.4 1.3 2.9E-05 47.0 0.7 51 99-155 22-72 (442)
115 PF12861 zf-Apc11: Anaphase-pr 71.6 4 8.8E-05 35.3 3.0 53 34-86 26-84 (85)
116 PF14835 zf-RING_6: zf-RING of 71.5 1.3 2.8E-05 36.3 0.0 49 101-156 8-56 (65)
117 KOG0287 Postreplication repair 71.5 1.3 2.9E-05 47.0 0.2 55 34-88 17-72 (442)
118 PF14634 zf-RING_5: zinc-RING 69.1 4.2 9E-05 30.3 2.3 30 41-70 1-33 (44)
119 PF12678 zf-rbx1: RING-H2 zinc 64.3 5.4 0.00012 33.3 2.3 43 102-146 21-72 (73)
120 cd00350 rubredoxin_like Rubred 63.5 5.1 0.00011 28.3 1.7 11 139-149 16-26 (33)
121 PF10915 DUF2709: Protein of u 63.3 2.9 6.2E-05 41.3 0.6 58 52-116 39-103 (238)
122 COG5627 MMS21 DNA repair prote 61.1 3.7 8E-05 41.8 0.9 33 40-72 190-223 (275)
123 KOG0396 Uncharacterized conser 60.4 3.9 8.4E-05 44.2 1.0 78 76-156 307-384 (389)
124 PHA02926 zinc finger-like prot 54.4 11 0.00024 38.4 2.9 52 39-111 170-230 (242)
125 KOG2932 E3 ubiquitin ligase in 54.3 4.6 9.9E-05 42.7 0.3 47 103-158 93-141 (389)
126 COG5222 Uncharacterized conser 53.8 9.3 0.0002 40.2 2.4 37 34-71 270-307 (427)
127 PF14446 Prok-RING_1: Prokaryo 52.8 11 0.00025 29.9 2.2 46 100-151 5-52 (54)
128 smart00531 TFIIE Transcription 52.3 8.8 0.00019 36.3 1.8 39 98-152 97-135 (147)
129 PRK06266 transcription initiat 51.0 12 0.00025 36.8 2.5 34 98-152 115-148 (178)
130 TIGR00570 cdk7 CDK-activating 49.6 16 0.00036 38.9 3.5 32 40-71 4-40 (309)
131 COG5189 SFP1 Putative transcri 48.1 4.1 8.8E-05 43.2 -1.2 54 99-152 348-410 (423)
132 PF04126 Cyclophil_like: Cyclo 47.6 1.2E+02 0.0027 27.6 8.6 99 351-481 3-113 (120)
133 TIGR00373 conserved hypothetic 46.7 15 0.00032 35.4 2.4 34 98-152 107-140 (158)
134 cd00730 rubredoxin Rubredoxin; 46.6 8.6 0.00019 30.0 0.7 12 138-149 32-43 (50)
135 KOG2462 C2H2-type Zn-finger pr 46.5 16 0.00034 38.2 2.8 56 98-153 128-200 (279)
136 KOG0825 PHD Zn-finger protein 46.4 6.2 0.00013 46.4 -0.2 52 99-153 122-173 (1134)
137 COG5175 MOT2 Transcriptional r 46.0 11 0.00025 40.2 1.6 58 98-157 13-70 (480)
138 COG5540 RING-finger-containing 45.7 18 0.00039 38.3 3.0 52 97-150 320-371 (374)
139 KOG2169 Zn-finger transcriptio 45.2 11 0.00025 44.0 1.7 98 57-160 256-365 (636)
140 KOG0824 Predicted E3 ubiquitin 45.1 11 0.00025 39.7 1.5 49 102-156 9-57 (324)
141 PF05605 zf-Di19: Drought indu 43.6 9.4 0.0002 29.8 0.5 41 100-151 2-42 (54)
142 COG5432 RAD18 RING-finger-cont 43.1 14 0.0003 38.9 1.7 48 99-152 24-71 (391)
143 KOG2593 Transcription initiati 42.9 15 0.00033 40.6 2.1 41 98-153 126-166 (436)
144 KOG4159 Predicted E3 ubiquitin 41.7 16 0.00034 40.4 2.0 39 40-78 85-123 (398)
145 KOG0883 Cyclophilin type, U bo 40.2 15 0.00033 40.1 1.5 54 39-92 101-160 (518)
146 PF14353 CpXC: CpXC protein 39.3 28 0.00061 31.8 3.0 57 101-162 2-60 (128)
147 KOG4739 Uncharacterized protei 38.8 15 0.00032 37.7 1.1 43 101-149 4-46 (233)
148 KOG1940 Zn-finger protein [Gen 38.4 18 0.00038 38.1 1.7 55 92-148 150-204 (276)
149 PRK05452 anaerobic nitric oxid 37.6 31 0.00067 39.0 3.6 45 98-149 423-467 (479)
150 COG1592 Rubrerythrin [Energy p 36.4 19 0.00042 35.0 1.5 10 140-149 149-158 (166)
151 COG5152 Uncharacterized conser 35.5 21 0.00046 35.6 1.6 46 98-149 194-239 (259)
152 KOG3993 Transcription factor ( 34.8 7.7 0.00017 42.7 -1.7 80 69-168 231-315 (500)
153 PF14446 Prok-RING_1: Prokaryo 34.7 23 0.00049 28.2 1.4 19 140-158 5-23 (54)
154 KOG1002 Nucleotide excision re 32.7 27 0.00058 39.6 2.0 53 97-153 533-588 (791)
155 PF14835 zf-RING_6: zf-RING of 32.3 14 0.00031 30.4 -0.1 50 40-91 8-58 (65)
156 KOG1814 Predicted E3 ubiquitin 31.4 35 0.00075 37.7 2.5 50 84-134 160-217 (445)
157 KOG0802 E3 ubiquitin ligase [P 30.9 27 0.00058 40.1 1.7 43 39-81 291-338 (543)
158 KOG0825 PHD Zn-finger protein 30.0 12 0.00026 44.1 -1.3 38 42-79 126-166 (1134)
159 PF09986 DUF2225: Uncharacteri 30.0 21 0.00045 36.0 0.5 56 100-158 5-66 (214)
160 PHA02768 hypothetical protein; 29.7 24 0.00052 28.2 0.7 40 100-153 5-44 (55)
161 KOG0311 Predicted E3 ubiquitin 29.5 11 0.00024 40.7 -1.6 50 98-151 41-90 (381)
162 COG5243 HRD1 HRD ubiquitin lig 28.6 72 0.0016 34.9 4.3 45 40-84 288-345 (491)
163 PF13132 DUF3950: Domain of un 28.4 13 0.00028 25.9 -0.8 7 591-597 14-20 (30)
164 COG5220 TFB3 Cdk activating ki 28.2 20 0.00043 36.8 0.1 52 100-152 10-65 (314)
165 COG5152 Uncharacterized conser 27.4 24 0.00051 35.3 0.4 42 37-79 195-236 (259)
166 PF04423 Rad50_zn_hook: Rad50 27.1 25 0.00055 27.4 0.5 23 129-153 11-33 (54)
167 PRK00464 nrdR transcriptional 27.0 26 0.00056 33.7 0.6 40 101-152 1-40 (154)
168 COG1548 Predicted transcriptio 26.7 38 0.00083 35.5 1.8 58 119-178 94-165 (330)
169 KOG4628 Predicted E3 ubiquitin 26.3 46 0.001 36.1 2.4 46 101-148 230-275 (348)
170 KOG2462 C2H2-type Zn-finger pr 25.9 51 0.0011 34.6 2.5 83 58-152 168-255 (279)
171 PF00301 Rubredoxin: Rubredoxi 25.0 18 0.00038 27.9 -0.7 12 138-149 32-43 (47)
172 PRK11088 rrmA 23S rRNA methylt 23.7 42 0.0009 34.6 1.5 25 40-64 3-30 (272)
173 PF10537 WAC_Acf1_DNA_bd: ATP- 22.9 64 0.0014 28.9 2.3 35 100-148 3-38 (102)
174 COG5533 UBP5 Ubiquitin C-termi 22.3 43 0.00092 35.9 1.2 61 99-159 234-303 (415)
175 PF13894 zf-C2H2_4: C2H2-type 21.8 41 0.00089 20.5 0.6 12 101-112 1-12 (24)
176 KOG1703 Adaptor protein Enigma 21.6 70 0.0015 36.1 2.9 97 40-149 331-431 (479)
177 COG5194 APC11 Component of SCF 21.3 63 0.0014 27.9 1.8 47 38-84 19-81 (88)
178 KOG1001 Helicase-like transcri 21.2 24 0.00052 41.6 -1.0 52 101-157 455-506 (674)
179 PF12861 zf-Apc11: Anaphase-pr 20.2 90 0.002 27.2 2.6 52 100-152 21-83 (85)
No 1
>KOG0883 consensus Cyclophilin type, U box-containing peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=6.3e-150 Score=1147.21 Aligned_cols=511 Identities=58% Similarity=0.940 Sum_probs=458.4
Q ss_pred CCCCCCCCCCeeeeHHHHhhhcCCcccc-ccCCCCCCCCCccccCCCCCCCCceecCCCCeeeHHhHHHHHHhcCCCCCC
Q 007574 1 MGKKQHSKDRMFITKTEWATEWGGAKSK-EVRTPFKRLPFYCCALTFTPFEDPVCTADGSVFELMSITPYIRKYGKHPVT 79 (597)
Q Consensus 1 Mgk~~~~~dk~yiT~~E~~~~~gg~k~~-~~~~~~~~lpf~~C~LSl~pl~~PV~t~~G~ly~ke~Il~~L~k~~~~Pvt 79 (597)
|||+||||||||||++||+..|||++.. ..+..|+||||+||+|++.||++|||+.+|.+||..+|++||++|++||+|
T Consensus 1 MGKkQHqKDkmylT~tEw~~~~Ggkk~~~~n~~~FkrLP~~hC~lt~~Pfe~PvC~~dg~vFd~~~Ivp~lkk~g~nP~t 80 (518)
T KOG0883|consen 1 MGKKQHQKDKMYLTTTEWKSIYGGKKDTGENRTQFKRLPFNHCSLTMLPFEDPVCTVDGTVFDLTAIVPWLKKHGTNPIT 80 (518)
T ss_pred CCcccccccceEEeehhhhhhcCCCCCCcccccccccCChhhceeccccccCcccccCCcEEeeehhhHHHHHcCCCCCC
Confidence 9999999999999999999999999885 348999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCccccccccccCcccccccccccccCceeEEEEecCcceehHHHHHHHhhcccCccccCCCCCCCCCCeeEec
Q 007574 80 GTPLKLEDLIPLTFHKNAEGEYHCPVLNKVFTEFTHIVAVKTTGNVFCFEAIKELNIKTKNWKELLTDEPFTKEDLITIQ 159 (597)
Q Consensus 80 g~~l~lkdLi~l~f~kn~~~~~~CPvt~k~ft~~t~~v~ik~~G~V~s~eai~~l~~k~k~~~~lv~~~~f~~~DII~Lq 159 (597)
|++|+.+|||+|+|++|++++|||||++++|++++|||||+++|||||||||++|||+.++|+||++++||+|.|||+||
T Consensus 81 G~kl~~~dLIkL~F~Kns~geyhcPvlfk~FT~~sHIvAv~TTGNvy~~eai~~LNiK~knwkdLltdepFtR~DiItiQ 160 (518)
T KOG0883|consen 81 GQKLDGKDLIKLKFHKNSEGEYHCPVLFKVFTRFSHIVAVRTTGNVYSWEAIEELNIKTKNWKDLLTDEPFTRADIITIQ 160 (518)
T ss_pred CCccccccceeeeeccCCCCcccCceeeeeecccceEEEEEecCceeeHHHHHHhCcchhhHHHhhccCCcchhceeeec
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCcchhccchhhhhhcCCccChHHHhhccCCCC-ccc-ccchhHHHHHHHhhhcccccccccCCCCchhHHHHHHHHH
Q 007574 160 NPNALDTKVTLEFDHVKKGLKVDDEELRKMESDPT-YNI-NVAGDIKQMLQELGTEKGQETALLGGGGSKAQKERAAALA 237 (597)
Q Consensus 160 dp~~~~~~~~~~f~h~k~~~~~~~~~~~~~~~~~~-~~~-~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (597)
||++++++++++|+|||+++++.++++++++.+|+ ..+ ++|-+++..|+||.+++.. +
T Consensus 161 dP~~lek~~~~~F~hvk~~lk~~~eeek~~~~dpa~~~~k~~n~e~ks~l~el~k~~~p--------------------~ 220 (518)
T KOG0883|consen 161 DPNNLEKFNMSDFYHVKKNLKTADEEEKKAKKDPALGYIKAMNLETKSTLPELSKEYQP--------------------K 220 (518)
T ss_pred CcchhhccchhhHHHHhcccccCcHHHHHhhcCchhhhhhhcchhhhhhhHHHhhhhcc--------------------c
Confidence 99999999999999999999999888888899998 455 7888999999999997630 0
Q ss_pred HHHHHhhhhhcccccccccccccccccccccccccccccCccchhccccchHHHHHHHHhhhcCCCcccccccccccCCC
Q 007574 238 AILAARSRIEENSKSDANGEAKATKAFSIVDAASASVHGRSASAAKTASSDKTAARIAMHMAGERTPVNAKLVKSRYTTG 317 (597)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~stg 317 (597)
+.. ++..+ ...++++++|||||
T Consensus 221 ~~~-------------------------------a~t~~---------------------------~~aD~~naahyStG 242 (518)
T KOG0883|consen 221 KSI-------------------------------ASTMK---------------------------RSADKINAAHYSTG 242 (518)
T ss_pred hhh-------------------------------hhhcc---------------------------ccchhhhhhhcccc
Confidence 000 00000 11256689999999
Q ss_pred ccccccccCCCCCCCcccchhhhhh----cCCCcceEEEEEEeCeeEEEEeCCCCChhhHHHHHHHHhccccCCceEEEe
Q 007574 318 AASRSFTSTAYDPVTTNEFEYIKVE----KNPKKKGYVQLHTTHGDLNIELHCDITPRSCENFITLCERGYYNGVAFHRS 393 (597)
Q Consensus 318 ~~~~s~tSt~~~p~t~~~~~~~~~~----~~~k~~~~V~l~T~~G~I~IEL~~d~aP~tv~NFl~L~~~g~Y~gt~fhRv 393 (597)
.+|+|||||+|+|+|.++++.++.+ .+++++|||+|+|+.|.|+||||||.+|++|+||+.||+.|||+|+.|||.
T Consensus 243 ~vaasfTSTam~PvT~neaaiid~d~~ry~rvKkkgyvrl~Tn~G~lNlELhcd~~P~aceNFI~lc~~gYYnnt~FHRs 322 (518)
T KOG0883|consen 243 AVAASFTSTAMTPVTKNEAAIIDEDDVRYTRVKKKGYVRLVTNHGPLNLELHCDYAPRACENFITLCKNGYYNNTIFHRS 322 (518)
T ss_pred ceeceeccceeeecccchhhhccchhhhhccccccceEEEeccCCceeeEeecCcchHHHHHHHHHHhcccccchHHHHH
Confidence 9999999999999999999998877 789999999999999999999999999999999999999999999999999
Q ss_pred ecCcEEEecCCCCCCCCCCccCCCCCCCcccccccCCCccEEEEecCCCCCCCcceEEeccCCCCCCCCCcEEEEEEcCh
Q 007574 394 IRNFMIQGGDPTGTGRGGESIWGKPFKDEVNSKLLHSGRGVVSMANSGPHTNGSQFFILYKSATHLNYKHTVFGGVVGGL 473 (597)
Q Consensus 394 i~~f~IQgGdptg~g~gg~si~g~~f~dE~~~~l~h~~rG~lsman~g~ntngSqFFItl~~~p~LD~k~tVFGrVv~G~ 473 (597)
|+|||||||||+|+|+||+||||.+|.|||.+.|.|++||+|||||+|||+|||||||++++|.|||++||||||||+|+
T Consensus 323 IrnFmiQGGDPTGTG~GGeSiWgKpFkDEf~~~l~H~gRGvlSMANsGpnTNgSQFFItyrsckhLd~KHTIFGrvVGGl 402 (518)
T KOG0883|consen 323 IRNFMIQGGDPTGTGRGGESIWGKPFKDEFCSNLSHDGRGVLSMANSGPNTNGSQFFITYRSCKHLDNKHTIFGRVVGGL 402 (518)
T ss_pred HHHHeeeCCCCCCCCCCCccccCCccccccCCCCCcCCcceEeeccCCCCCCCceEEEEecchhhccccceeeeeeeccH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCCCCCCCCccccEEeEEEEEeCCCCCCChhhHHHHHhhhhccccccccccCCcccCCCCCCCCCCcCcccc
Q 007574 474 TTLAAMEKVPVDENDRPLEEIKITGVTVFVNPYSEPDEEEEEEKAKDEKNAEDEDKDKVGSWYSNPGTGTQAGAVGGGGV 553 (597)
Q Consensus 474 dvL~~Ie~~~td~~~rP~~~I~I~~~~Vl~dPf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv 553 (597)
++|.+||++++++.++|..+|+|.++.||+|||+|.+++.++|+++. .+.++++..+.++ ++|.+++..+.+++.||
T Consensus 403 dtL~amEnve~d~~DrP~e~I~i~~~~VFVdPfeEa~~e~~kEr~e~-~k~~~e~~~k~~s--~~~~~~s~~~~~~~~gV 479 (518)
T KOG0883|consen 403 DTLTAMENVETDEKDRPKEEIKIEDAIVFVDPFEEADKEREKERAER-LKEEEEDNLKRTS--SQPKSGSTTPHALGAGV 479 (518)
T ss_pred HHHHHHhcCCCCCCCCcccceEEeeeEEeeCcHHHHHHHHHHHHHHH-hhccchhhhhhhc--cCccccCCCcccccccH
Confidence 99999999999999999999999999999999999999776666553 3333444455555 67888888889999999
Q ss_pred cccccccCCCCCCCCCCCCchhhhhhhcccccccCCCCCCCCCC
Q 007574 554 GKYLKARSAPIDSAADDGGLTAIATAKKRKVGVSAGEFKDFSGW 597 (597)
Q Consensus 554 gkyl~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~f~~f~~w 597 (597)
||||++.+...... ...++.. . .+||++...||||||+|
T Consensus 480 GKYlk~~~s~~~~~-~~~tt~~---v-~~~kKk~~~GfgdFssW 518 (518)
T KOG0883|consen 480 GKYLKKAASLEKKE-FPMTTAT---V-NKKKKKAATGFGDFSSW 518 (518)
T ss_pred HHHHHHHhhhhccc-CCccccc---c-chhcccccccccCcccC
Confidence 99999875433222 1111111 1 23333445899999999
No 2
>KOG0881 consensus Cyclophilin type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3e-50 Score=358.16 Aligned_cols=154 Identities=52% Similarity=0.924 Sum_probs=150.8
Q ss_pred ceEEEEEEeCeeEEEEeCCCCChhhHHHHHHHHhccccCCceEEEeecCcEEEecCCCCCCCCCCccCCCCCCCcccccc
Q 007574 348 KGYVQLHTTHGDLNIELHCDITPRSCENFITLCERGYYNGVAFHRSIRNFMIQGGDPTGTGRGGESIWGKPFKDEVNSKL 427 (597)
Q Consensus 348 ~~~V~l~T~~G~I~IEL~~d~aP~tv~NFl~L~~~g~Y~gt~fhRvi~~f~IQgGdptg~g~gg~si~g~~f~dE~~~~l 427 (597)
..+|.|+|++|.|.||||-+.||+||.||..|++.|||+|+.|||||++||||||||+|+|+||.||||..|.||++..|
T Consensus 9 ~~~V~LeTsmG~i~~ElY~kHaP~TC~NF~eLarrgYYn~v~FHRii~DFmiQGGDPTGTGRGGaSIYG~kF~DEi~~dL 88 (164)
T KOG0881|consen 9 PPNVTLETSMGKITLELYWKHAPRTCQNFAELARRGYYNGVIFHRIIKDFMIQGGDPTGTGRGGASIYGDKFEDEIHSDL 88 (164)
T ss_pred CCeEEEeecccceehhhhhhcCcHHHHHHHHHHhcccccceeeeehhhhheeecCCCCCCCCCccccccchhhhhhhhhh
Confidence 45899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCccEEEEecCCCCCCCcceEEeccCCCCCCCCCcEEEEEEcChHHHHHHhcCCCCCCCCCccccEEeEEEE
Q 007574 428 LHSGRGVVSMANSGPHTNGSQFFILYKSATHLNYKHTVFGGVVGGLTTLAAMEKVPVDENDRPLEEIKITGVTV 501 (597)
Q Consensus 428 ~h~~rG~lsman~g~ntngSqFFItl~~~p~LD~k~tVFGrVv~G~dvL~~Ie~~~td~~~rP~~~I~I~~~~V 501 (597)
+|.+.|+|||||.|||+|||||||||.+.+|||++||+||||..||+|+.+|..+.+|..+||..+++|....+
T Consensus 89 khTGAGILsMANaGPnTNgSQFFiTLAPt~~LDGKHTIFGRV~~Gm~vikr~G~v~Td~~DRPi~~~kIika~~ 162 (164)
T KOG0881|consen 89 KHTGAGILSMANAGPNTNGSQFFITLAPTQWLDGKHTIFGRVCSGMEVIKRMGMVETDNSDRPIDEVKIIKAYP 162 (164)
T ss_pred cccchhhhhhhccCCCCCCceEEEEecCccccCCcceeehhhhhhHHHHHhhcceecCCCCCCccceeeEeeec
Confidence 99999999999999999999999999999999999999999999999999999999999999999999998754
No 3
>cd01923 cyclophilin_RING cyclophilin_RING: cyclophilin-type peptidylprolyl cis- trans isomerases (cyclophilins) having a modified RING finger domain. This group includes the nuclear proteins, Human hCyP-60 and Caenorhabditis elegans MOG-6 which, compared to the archetypal cyclophilin Human cyclophilin A exhibit reduced peptidylprolyl cis- trans isomerase activity and lack a residue important for cyclophilin binding. Human hCyP-60 has been shown to physically interact with the proteinase inhibitor peptide eglin c and; C. elegans MOG-6 to physically interact with MEP-1, a nuclear zinc finger protein. MOG-6 has been shown to function in germline sex determination.
Probab=100.00 E-value=1.3e-46 Score=358.26 Aligned_cols=159 Identities=72% Similarity=1.262 Sum_probs=155.4
Q ss_pred EEEEEEeCeeEEEEeCCCCChhhHHHHHHHHhccccCCceEEEeecCcEEEecCCCCCCCCCCccCCCCCCCcccccccC
Q 007574 350 YVQLHTTHGDLNIELHCDITPRSCENFITLCERGYYNGVAFHRSIRNFMIQGGDPTGTGRGGESIWGKPFKDEVNSKLLH 429 (597)
Q Consensus 350 ~V~l~T~~G~I~IEL~~d~aP~tv~NFl~L~~~g~Y~gt~fhRvi~~f~IQgGdptg~g~gg~si~g~~f~dE~~~~l~h 429 (597)
||+|+|+.|+|+||||++.||+||+||++||+.|||+++.||||+++|||||||++++|.++.++||..|++|++..+.|
T Consensus 1 ~v~~~T~~G~i~ieL~~~~aP~t~~nF~~L~~~g~Y~~~~f~rv~~~~~iq~Gd~~~~g~~~~~~~g~~~~~E~~~~~~h 80 (159)
T cd01923 1 YVRLHTNKGDLNLELHCDKAPKACENFIKLCKKGYYDGTIFHRSIRNFMIQGGDPTGTGRGGESIWGKPFKDEFKPNLSH 80 (159)
T ss_pred CEEEEEccccEEEEEeCCCChHHHHHHHHHHhcCccCCcEEEEEeCCcEEEecccCCCCCCCccccCCccCcccccCcCc
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999998888999
Q ss_pred CCccEEEEecCCCCCCCcceEEeccCCCCCCCCCcEEEEEEcChHHHHHHhcCCCCCCCCCccccEEeEEEEEeCCCCC
Q 007574 430 SGRGVVSMANSGPHTNGSQFFILYKSATHLNYKHTVFGGVVGGLTTLAAMEKVPVDENDRPLEEIKITGVTVFVNPYSE 508 (597)
Q Consensus 430 ~~rG~lsman~g~ntngSqFFItl~~~p~LD~k~tVFGrVv~G~dvL~~Ie~~~td~~~rP~~~I~I~~~~Vl~dPf~~ 508 (597)
+.+|+|+||+.++++++||||||+.++|+||++|+|||||++|||+|++|++++++.+++|..+|+|.+|.|+.|||++
T Consensus 81 ~~~G~v~ma~~~~~s~~sqFfIt~~~~~~Ld~~~~vFG~V~~G~~vl~~I~~~~~~~~~~P~~~i~I~~~~i~~dpf~~ 159 (159)
T cd01923 81 DGRGVLSMANSGPNTNGSQFFITYRSCKHLDGKHTVFGRVVGGLETLEAMENVPDPGTDRPKEEIKIEDTSVFVDPFEE 159 (159)
T ss_pred CCCcEEEEeeCCCCCcccEEEEECCCCcccCCCccEEEEEEcCHHHHHHHHcCCCCCCCCCCCCeEEEEeEEEeCCCCC
Confidence 9999999999999999999999999999999999999999999999999999999889999999999999999999985
No 4
>KOG0546 consensus HSP90 co-chaperone CPR7/Cyclophilin [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.7e-47 Score=392.65 Aligned_cols=159 Identities=43% Similarity=0.763 Sum_probs=149.4
Q ss_pred cceEEEEE---EeCeeEEEEeCCCCChhhHHHHHHHHhc--c---------ccCCceEEEeecCcEEEecCCC-CCCCCC
Q 007574 347 KKGYVQLH---TTHGDLNIELHCDITPRSCENFITLCER--G---------YYNGVAFHRSIRNFMIQGGDPT-GTGRGG 411 (597)
Q Consensus 347 ~~~~V~l~---T~~G~I~IEL~~d~aP~tv~NFl~L~~~--g---------~Y~gt~fhRvi~~f~IQgGdpt-g~g~gg 411 (597)
+..|..|. -+.|||+||||.|.||+||+||+.||.+ | .|.|+.|||||++|||||||++ |+|+||
T Consensus 9 pr~ffDISI~ge~~GRIvfeLf~dv~PKTaENFraLCtGE~G~~~~~gk~L~YKG~~FHRViK~FMiQgGDfs~gnGtGG 88 (372)
T KOG0546|consen 9 PRVFFDISIGGEPAGRIVFELFNDVVPKTAENFRALCTGEKGGGLTTGKPLHYKGSRFHRVIKNFMIQGGDFSEGNGTGG 88 (372)
T ss_pred ceEEEEEEeCCcccceEEEEeecccCchhHHHHHHHhccccCCCCCCCCeeeecCchhheeeecceeeccccccCCCCCc
Confidence 45666665 4789999999999999999999999953 2 3999999999999999999999 999999
Q ss_pred CccCCCCCCCcccccccCCCccEEEEecCCCCCCCcceEEeccCCCCCCCCCcEEEEEEcChHHHHHHhcCCCCCCCCCc
Q 007574 412 ESIWGKPFKDEVNSKLLHSGRGVVSMANSGPHTNGSQFFILYKSATHLNYKHTVFGGVVGGLTTLAAMEKVPVDENDRPL 491 (597)
Q Consensus 412 ~si~g~~f~dE~~~~l~h~~rG~lsman~g~ntngSqFFItl~~~p~LD~k~tVFGrVv~G~dvL~~Ie~~~td~~~rP~ 491 (597)
+||||..|.|| ++.|+|+++++|||||.||||||||||||+.++|||||+|+|||+||.|++||+.||.+.+|..++|+
T Consensus 89 eSIYG~~FdDE-nF~lKHdrpflLSMAN~GpNTNgSQFFITT~p~PHLdGkHVVFGqVI~G~~VVr~IEn~~~d~~skP~ 167 (372)
T KOG0546|consen 89 ESIYGEKFDDE-NFELKHDRPFLLSMANRGPNTNGSQFFITTVPTPHLDGKHVVFGQVIKGKEVVREIENLETDEESKPL 167 (372)
T ss_pred ccccccccccc-cceeccCcchhhhhhcCCCCCCCcceEEeCCCCCCcCCceeEEeeEeechhHHHHHhccccccCCCCc
Confidence 99999999999 89999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccEEeEEEEEeCCC
Q 007574 492 EEIKITGVTVFVNPY 506 (597)
Q Consensus 492 ~~I~I~~~~Vl~dPf 506 (597)
.+|+|.+|++|+.-.
T Consensus 168 ~dV~I~dCGel~~~~ 182 (372)
T KOG0546|consen 168 ADVVISDCGELVKKS 182 (372)
T ss_pred cceEecccccccccc
Confidence 999999999997653
No 5
>KOG0884 consensus Similar to cyclophilin-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=9.1e-47 Score=334.20 Aligned_cols=158 Identities=57% Similarity=1.042 Sum_probs=155.1
Q ss_pred EEEEEEeCeeEEEEeCCCCChhhHHHHHHHHhccccCCceEEEeecCcEEEecCCCCCCCCCCccCCCCCCCcccccccC
Q 007574 350 YVQLHTTHGDLNIELHCDITPRSCENFITLCERGYYNGVAFHRSIRNFMIQGGDPTGTGRGGESIWGKPFKDEVNSKLLH 429 (597)
Q Consensus 350 ~V~l~T~~G~I~IEL~~d~aP~tv~NFl~L~~~g~Y~gt~fhRvi~~f~IQgGdptg~g~gg~si~g~~f~dE~~~~l~h 429 (597)
.|+|+|+.|+|.||||++.+|++|+||+.||...||++++|||.+++||+|.|||+.+|+||.||||.+|+||+...|+|
T Consensus 2 svtlht~~gdikiev~~e~tpktce~~l~~~~~~~~n~~~~~~~~~~f~v~~~~~~~tgrgg~siwg~~fede~~~~lkh 81 (161)
T KOG0884|consen 2 SVTLHTDVGDIKIEVFCERTPKTCENFLALCASDYYNGCIFHRNIKGFMVQTGDPTHTGRGGNSIWGKKFEDEYSEYLKH 81 (161)
T ss_pred eEEEeeccCcEEEEEEecCChhHHHHHHHHhhhhhccceeecCCCCCcEEEeCCCCCCCCCCccccCCcchHHHHHHHhh
Confidence 48899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCccEEEEecCCCCCCCcceEEeccCCCCCCCCCcEEEEEEcChHHHHHHhcCCCCCC-CCCccccEEeEEEEEeCCCC
Q 007574 430 SGRGVVSMANSGPHTNGSQFFILYKSATHLNYKHTVFGGVVGGLTTLAAMEKVPVDEN-DRPLEEIKITGVTVFVNPYS 507 (597)
Q Consensus 430 ~~rG~lsman~g~ntngSqFFItl~~~p~LD~k~tVFGrVv~G~dvL~~Ie~~~td~~-~rP~~~I~I~~~~Vl~dPf~ 507 (597)
+.||+|||||.|||+|+||||||+...||||-+|||||+||+|+|+|+.||.+++++. .||+.++.|.+++|-.|||.
T Consensus 82 ~~rg~vsmanngp~tn~sqffity~kq~hldmkytvfgkvidg~etldele~l~v~~ktyrpl~~~~ik~itihanp~a 160 (161)
T KOG0884|consen 82 NVRGVVSMANNGPNTNGSQFFITYGKQPHLDMKYTVFGKVIDGLETLDELEKLPVNEKTYRPLNDVHIKDITIHANPFA 160 (161)
T ss_pred ccceeEEcccCCCCCCCceEEEEecCCCccceeEeeeeeeccchhhHHHHhhcccCccccccchheeeeeeEEecCcCC
Confidence 9999999999999999999999999999999999999999999999999999999985 89999999999999999995
No 6
>cd01921 cyclophilin_RRM cyclophilin_RRM: cyclophilin-type peptidylprolyl cis- trans isomerase domain occuring with a C-terminal RNA recognition motif domain (RRM). This subfamily of the cyclophilin domain family contains a number of eukaryotic cyclophilins having the RRM domain including the nuclear proteins: human hCyP-57, Arabidopsis thaliana AtCYP59, Caenorhabditis elegans CeCyP-44 and Paramecium tetrurelia Kin241. The Kin241 protein has been shown to have a role in cell morphogenesis.
Probab=100.00 E-value=8e-45 Score=348.33 Aligned_cols=157 Identities=45% Similarity=0.768 Sum_probs=149.9
Q ss_pred EEEeCeeEEEEeCCCCChhhHHHHHHHHhccccCCceEEEeecCcEEEecCCCCCCCCCCccCC-------CCCCCcccc
Q 007574 353 LHTTHGDLNIELHCDITPRSCENFITLCERGYYNGVAFHRSIRNFMIQGGDPTGTGRGGESIWG-------KPFKDEVNS 425 (597)
Q Consensus 353 l~T~~G~I~IEL~~d~aP~tv~NFl~L~~~g~Y~gt~fhRvi~~f~IQgGdptg~g~gg~si~g-------~~f~dE~~~ 425 (597)
|+|+.|+|+||||++.||+||+||++||+.+||+|+.||||+++|||||||+.+++.++.++|+ ..|.+|+.+
T Consensus 2 l~Ts~G~i~ieL~~~~aP~t~~nF~~L~~~~~Y~g~~fhrvi~~f~iQgGd~~~~g~~~~~~~~~~~~~~~~~~~~e~~~ 81 (166)
T cd01921 2 LETTLGDLVIDLFTDECPLACLNFLKLCKLKYYNFCLFYNVQKDFIAQTGDPTGTGAGGESIYSQLYGRQARFFEPEILP 81 (166)
T ss_pred cEeccCCEEEEEcCCCCCHHHHHHHHHHhcCCcCCCEEEEEeCCceEEECCcCCCCCCCcccccccccccCcccCcccCC
Confidence 7899999999999999999999999999999999999999999999999999999999999886 357888778
Q ss_pred cccCCCccEEEEecCCCCCCCcceEEeccC-CCCCCCCCcEEEEEEcChHHHHHHhcCCCCCCCCCccccEEeEEEEEeC
Q 007574 426 KLLHSGRGVVSMANSGPHTNGSQFFILYKS-ATHLNYKHTVFGGVVGGLTTLAAMEKVPVDENDRPLEEIKITGVTVFVN 504 (597)
Q Consensus 426 ~l~h~~rG~lsman~g~ntngSqFFItl~~-~p~LD~k~tVFGrVv~G~dvL~~Ie~~~td~~~rP~~~I~I~~~~Vl~d 504 (597)
.++|+.+|+|+||+.++++++||||||+.+ +++||++|+|||||++|||||++|++++++.+++|..+|+|.+|+|+.|
T Consensus 82 ~~~h~~~G~l~ma~~~~~~~~SQFfIt~~~~~~~Ldg~~tvFG~Vi~G~dvv~~I~~~~~~~~~~P~~~i~I~~~~i~~~ 161 (166)
T cd01921 82 LLKHSKKGTVSMVNAGDNLNGSQFYITLGENLDYLDGKHTVFGQVVEGFDVLEKINDAIVDDDGRPLKDIRIKHTHILDD 161 (166)
T ss_pred ccccCCceEEEEeECCCCCccceEEEEcCCCCcccCCCccEEEEEEcCHHHHHHHHcCCCCCCCCCCCCeEEEEEEEECC
Confidence 899999999999999999999999999975 8999999999999999999999999999999999999999999999999
Q ss_pred CCCCC
Q 007574 505 PYSEP 509 (597)
Q Consensus 505 Pf~~~ 509 (597)
||+++
T Consensus 162 pf~~~ 166 (166)
T cd01921 162 PFPDP 166 (166)
T ss_pred CCCCC
Confidence 99875
No 7
>KOG0880 consensus Peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=9.4e-45 Score=345.86 Aligned_cols=155 Identities=47% Similarity=0.786 Sum_probs=145.1
Q ss_pred ceEEEEE---EeCeeEEEEeCCCCChhhHHHHHHHHhc---cc-cCCceEEEeecCcEEEecCCC-CCCCCCCccCCCCC
Q 007574 348 KGYVQLH---TTHGDLNIELHCDITPRSCENFITLCER---GY-YNGVAFHRSIRNFMIQGGDPT-GTGRGGESIWGKPF 419 (597)
Q Consensus 348 ~~~V~l~---T~~G~I~IEL~~d~aP~tv~NFl~L~~~---g~-Y~gt~fhRvi~~f~IQgGdpt-g~g~gg~si~g~~f 419 (597)
+.|..|+ -..|||+|+||+..+|+||+||.+||.. +| |.|++||||||||||||||.+ ++|.||.||||.+|
T Consensus 41 kV~fdi~~g~~~~grIvigLfG~~vPKTV~NF~~l~~~~~~~~gY~gS~FhRVi~nfmIQGGd~t~g~gtGg~SIyG~~F 120 (217)
T KOG0880|consen 41 KVYFDIEIGGEPVGRIVIGLFGKVVPKTVENFRALATSGEKGYGYKGSKFHRVIPNFMIQGGDFTKGDGTGGKSIYGEKF 120 (217)
T ss_pred EEEEEEEECCEeccEEEEEeccccchHHHHHHHHHHccCCCCcccCCceeeeeecCceeecCccccCCCCCCeEeecCCC
Confidence 4444443 5779999999999999999999999973 34 999999999999999999998 77999999999999
Q ss_pred CCcccccccCCCccEEEEecCCCCCCCcceEEeccCCCCCCCCCcEEEEEEcChHHHHHHhcCCCCCCCCCccccEEeEE
Q 007574 420 KDEVNSKLLHSGRGVVSMANSGPHTNGSQFFILYKSATHLNYKHTVFGGVVGGLTTLAAMEKVPVDENDRPLEEIKITGV 499 (597)
Q Consensus 420 ~dE~~~~l~h~~rG~lsman~g~ntngSqFFItl~~~p~LD~k~tVFGrVv~G~dvL~~Ie~~~td~~~rP~~~I~I~~~ 499 (597)
+|| |+.|+|+++|.|||||.||++||||||||+..++||||+|+|||+|++|||+|.+|+.+++|+.++|+++++|.+|
T Consensus 121 ~DE-Nf~LkH~rpG~lSMAn~GpDtNGsQFfItT~~t~wLDGkhVVFGqVl~Gmdvv~~Ie~~~TD~~dkP~e~v~I~~~ 199 (217)
T KOG0880|consen 121 PDE-NFKLKHDRPGRLSMANAGPDTNGSQFFITTVKTPWLDGKHVVFGQVLEGMDVVRKIENVKTDERDKPLEDVVIANC 199 (217)
T ss_pred CCc-cceeecCCCceEeeeccCCCCCCceEEEEecCCccccCceeEEeeehhhHHHHHHHHhcccCCCCCccccEEEeec
Confidence 999 8999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEe
Q 007574 500 TVFV 503 (597)
Q Consensus 500 ~Vl~ 503 (597)
+-+.
T Consensus 200 g~l~ 203 (217)
T KOG0880|consen 200 GELP 203 (217)
T ss_pred Cccc
Confidence 9654
No 8
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.2e-45 Score=382.87 Aligned_cols=154 Identities=49% Similarity=0.821 Sum_probs=150.6
Q ss_pred ceEEEEEEeCeeEEEEeCCCCChhhHHHHHHHHhccccCCceEEEeecCcEEEecCCCCCCCCCCccCCCCCCCcccccc
Q 007574 348 KGYVQLHTTHGDLNIELHCDITPRSCENFITLCERGYYNGVAFHRSIRNFMIQGGDPTGTGRGGESIWGKPFKDEVNSKL 427 (597)
Q Consensus 348 ~~~V~l~T~~G~I~IEL~~d~aP~tv~NFl~L~~~g~Y~gt~fhRvi~~f~IQgGdptg~g~gg~si~g~~f~dE~~~~l 427 (597)
..-+.|+|++|+|.|.||++.||+||+||-..|+.|||||..|||||++||||+|||.|.|+||+||||..|+|||++.|
T Consensus 404 ~~~aiihtt~gdi~~kl~p~ecpktvenf~th~rngyy~~~~fhriik~fmiqtgdp~g~gtggesiwg~dfedefh~~l 483 (558)
T KOG0882|consen 404 GKAAIIHTTQGDIHIKLYPEECPKTVENFTTHSRNGYYDNHTFHRIIKGFMIQTGDPLGDGTGGESIWGKDFEDEFHPNL 483 (558)
T ss_pred ccceEEEecccceEEEecccccchhhhhhhccccCccccCcchHHhhhhheeecCCCCCCCCCCcccccccchhhcCccc
Confidence 34578999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCccEEEEecCCCCCCCcceEEeccCCCCCCCCCcEEEEEEcChHHHHHHhcCCCCCCCCCccccEEeEEEE
Q 007574 428 LHSGRGVVSMANSGPHTNGSQFFILYKSATHLNYKHTVFGGVVGGLTTLAAMEKVPVDENDRPLEEIKITGVTV 501 (597)
Q Consensus 428 ~h~~rG~lsman~g~ntngSqFFItl~~~p~LD~k~tVFGrVv~G~dvL~~Ie~~~td~~~rP~~~I~I~~~~V 501 (597)
+|+++-.|||||+||||||||||||..+.||||++|||||||+.||||+.+|+++.++..+||.++|.|.++.|
T Consensus 484 rhdrpft~smanag~ntngsqffit~~~tpwld~khtvfgrv~~gm~vvqri~~v~t~k~drp~e~v~iinisv 557 (558)
T KOG0882|consen 484 RHDRPFTVSMANAGPNTNGSQFFITTVPTPWLDGKHTVFGRVTAGMDVVQRIEQVKTDKYDRPYEDVKIINISV 557 (558)
T ss_pred ccCCCceEEecccCCCCCCceEEEEecCccccCCcceeEEEEecchhHHhHhhhcccCcCCCCCCceeEEEEec
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999876
No 9
>cd01925 cyclophilin_CeCYP16-like cyclophilin_CeCYP16-like: cyclophilin-type peptidylprolyl cis- trans isomerase) (PPIase) domain similar to Caenorhabditis elegans cyclophilin 16. C. elegans CeCYP-16, compared to the archetypal cyclophilin Human cyclophilin A has, a reduced peptidylprolyl cis- trans isomerase activity, is cyclosporin insensitive and shows an altered substrate preference favoring, hydrophobic, acidic or amide amino acids. Most members of this subfamily have a glutamate residue in the active site at the position equivalent to a tryptophan (W121 in Human cyclophilin A), which has been shown to be important for cyclophilin binding.
Probab=100.00 E-value=1e-43 Score=342.21 Aligned_cols=167 Identities=50% Similarity=0.880 Sum_probs=159.6
Q ss_pred CCcceEEEEEEeCeeEEEEeCCCCChhhHHHHHHHHhccccCCceEEEeecCcEEEecCCCCCCCCCCccCCCCCCCccc
Q 007574 345 PKKKGYVQLHTTHGDLNIELHCDITPRSCENFITLCERGYYNGVAFHRSIRNFMIQGGDPTGTGRGGESIWGKPFKDEVN 424 (597)
Q Consensus 345 ~k~~~~V~l~T~~G~I~IEL~~d~aP~tv~NFl~L~~~g~Y~gt~fhRvi~~f~IQgGdptg~g~gg~si~g~~f~dE~~ 424 (597)
|.+.+.|.|+|+.|+|+||||++.+|+||+||+.||+.+||+++.||||+++|||||||+.++|.|+.++||..|++|.+
T Consensus 2 ~~~~~~v~i~Ts~G~i~ieL~~~~~P~t~~nF~~L~~~~~Y~~~~f~Rvi~~f~iQgGd~~~~g~g~~s~~g~~~~~E~~ 81 (171)
T cd01925 2 PPTTGKVILKTTAGDIDIELWSKEAPKACRNFIQLCLEGYYDNTIFHRVVPGFIIQGGDPTGTGTGGESIYGEPFKDEFH 81 (171)
T ss_pred CCcccEEEEEEccccEEEEEeCCCChHHHHHHHHHHhcCCCCCCEEEEEcCCcEEEccccCCCCccCcccCCCccCcccc
Confidence 46778999999999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred ccccCCCccEEEEecCCCCCCCcceEEeccCCCCCCCCCcEEEEEEc-ChHHHHHHhcCCCCCCCCCccccEEeEEEEEe
Q 007574 425 SKLLHSGRGVVSMANSGPHTNGSQFFILYKSATHLNYKHTVFGGVVG-GLTTLAAMEKVPVDENDRPLEEIKITGVTVFV 503 (597)
Q Consensus 425 ~~l~h~~rG~lsman~g~ntngSqFFItl~~~p~LD~k~tVFGrVv~-G~dvL~~Ie~~~td~~~rP~~~I~I~~~~Vl~ 503 (597)
..+.|+.+|+|+||+.++++++|||||++.++++||++|+|||+|++ ++++|++|+.++++.+++|..+|+|.+|.|+.
T Consensus 82 ~~~~~~~~G~l~ma~~g~~s~~sqFfIt~~~~~~ldg~~tvFG~V~g~~~~~v~~i~~~~~~~~~~P~~~i~I~~~~i~~ 161 (171)
T cd01925 82 SRLRFNRRGLVGMANAGDDSNGSQFFFTLDKADELNNKHTLFGKVTGDTIYNLLKLAEVETDKDERPVYPPKITSVEVLE 161 (171)
T ss_pred cCcCCCCCcEEEECcCCCCCcccEEEEEcCCCcccCCCceEEEEEEECcHHHHHHHhcCCcCCCCCcCCCeEEEEEEEEc
Confidence 88999999999999999999999999999999999999999999994 68899999999999999999999999999999
Q ss_pred CCCCCCCh
Q 007574 504 NPYSEPDE 511 (597)
Q Consensus 504 dPf~~~~~ 511 (597)
|||+++..
T Consensus 162 ~pf~~~~~ 169 (171)
T cd01925 162 NPFDDIVP 169 (171)
T ss_pred CCchhhcc
Confidence 99998753
No 10
>cd01928 Cyclophilin_PPIL3_like Cyclophilin_PPIL3_like. Proteins similar to Human cyclophilin-like peptidylprolyl cis- trans isomerase (PPIL3). Members of this family lack a key residue important for cyclosporin binding: the tryptophan residue corresponding to W121 in human hCyP-18a; most members have a histidine at this position. The exact function of the protein is not known.
Probab=100.00 E-value=1.5e-43 Score=335.35 Aligned_cols=151 Identities=62% Similarity=1.108 Sum_probs=146.5
Q ss_pred EEEEEeCeeEEEEeCCCCChhhHHHHHHHHhccccCCceEEEeecCcEEEecCCCCCCCCCCccCCCCCCCcccccccCC
Q 007574 351 VQLHTTHGDLNIELHCDITPRSCENFITLCERGYYNGVAFHRSIRNFMIQGGDPTGTGRGGESIWGKPFKDEVNSKLLHS 430 (597)
Q Consensus 351 V~l~T~~G~I~IEL~~d~aP~tv~NFl~L~~~g~Y~gt~fhRvi~~f~IQgGdptg~g~gg~si~g~~f~dE~~~~l~h~ 430 (597)
|.|+|+.|+|+||||++.||+||+||+.||+.+||+|+.|||++++||||||||.++|.++.++||.+|++|+...+.|+
T Consensus 3 v~l~T~~G~i~ieL~~~~aP~t~~nF~~L~~~g~Y~~~~f~rv~~~f~iq~Gd~~~~g~g~~~~~~~~~~~e~~~~~~~~ 82 (153)
T cd01928 3 VTLHTNLGDIKIELFCDDCPKACENFLALCASGYYNGCIFHRNIKGFMVQTGDPTGTGKGGESIWGKKFEDEFRETLKHD 82 (153)
T ss_pred EEEEEccccEEEEEcCCCCcHHHHHHHHHHhcCccCCcEEEEeCCCCEEEccccCCCCCCCCccCCCccccccccCCCcC
Confidence 78999999999999999999999999999999999999999999999999999999999999999999999987788999
Q ss_pred CccEEEEecCCCCCCCcceEEeccCCCCCCCCCcEEEEEEcChHHHHHHhcCCCCCCCCCccccEEeEEEE
Q 007574 431 GRGVVSMANSGPHTNGSQFFILYKSATHLNYKHTVFGGVVGGLTTLAAMEKVPVDENDRPLEEIKITGVTV 501 (597)
Q Consensus 431 ~rG~lsman~g~ntngSqFFItl~~~p~LD~k~tVFGrVv~G~dvL~~Ie~~~td~~~rP~~~I~I~~~~V 501 (597)
.+|+|+||+.++++++|||||++.++|+||++|+|||+|++|||||++|++++++.+++|..+|+|.+|.|
T Consensus 83 ~~G~v~ma~~~~~~~~SqFfI~~~~~~~Ld~~~tvFG~V~~G~dvl~~I~~~~~~~~~~P~~~i~I~~~~~ 153 (153)
T cd01928 83 SRGVVSMANNGPNTNGSQFFITYAKQPHLDGKYTVFGKVIDGFETLDTLEKLPVDKKYRPLEEIRIKDVTI 153 (153)
T ss_pred CCcEEEEeeCCCCCcccEEEEEeCCCcccCCCceEEEEEEeCHHHHHHHHcCCCCCCCCCcCCeEEEEeEC
Confidence 99999999999999999999999999999999999999999999999999999998999999999999864
No 11
>cd01927 cyclophilin_WD40 cyclophilin_WD40: cyclophilin-type peptidylprolyl cis- trans isomerases (cyclophilins) having a WD40 domain. This group consists of several hypothetical and putative eukaryotic and bacterial proteins which have a cyclophilin domain and a WD40 domain. Function of the protein is not known.
Probab=100.00 E-value=3.2e-43 Score=331.33 Aligned_cols=148 Identities=53% Similarity=0.894 Sum_probs=143.1
Q ss_pred EEEEeCeeEEEEeCCCCChhhHHHHHHHHhccccCCceEEEeecCcEEEecCCCCCCCCCCccCCCCCCCcccccccCCC
Q 007574 352 QLHTTHGDLNIELHCDITPRSCENFITLCERGYYNGVAFHRSIRNFMIQGGDPTGTGRGGESIWGKPFKDEVNSKLLHSG 431 (597)
Q Consensus 352 ~l~T~~G~I~IEL~~d~aP~tv~NFl~L~~~g~Y~gt~fhRvi~~f~IQgGdptg~g~gg~si~g~~f~dE~~~~l~h~~ 431 (597)
.|+|+.|+|+||||++.||++|+||+.||+.+||+++.||||+++|||||||+.++|.|+.++|+..|++|..+.+.|++
T Consensus 1 ~i~T~~G~i~ieL~~~~aP~t~~nF~~L~~~g~Y~~~~f~Rvi~~f~iq~Gd~~~~g~g~~~~~~~~~~~e~~~~~~h~~ 80 (148)
T cd01927 1 IIHTTKGDIHIRLFPEEAPKTVENFTTHARNGYYNNTIFHRVIKGFMIQTGDPTGDGTGGESIWGKEFEDEFSPSLKHDR 80 (148)
T ss_pred CeEeccccEEEEEeCCCCcHHHHHHHHHhhcCCcCCcEEEEEcCCcEEEecccCCCCCCCCcccCCccccccccccCcCC
Confidence 37899999999999999999999999999999999999999999999999999999999999999999999877899999
Q ss_pred ccEEEEecCCCCCCCcceEEeccCCCCCCCCCcEEEEEEcChHHHHHHhcCCCCCCCCCccccEEeEE
Q 007574 432 RGVVSMANSGPHTNGSQFFILYKSATHLNYKHTVFGGVVGGLTTLAAMEKVPVDENDRPLEEIKITGV 499 (597)
Q Consensus 432 rG~lsman~g~ntngSqFFItl~~~p~LD~k~tVFGrVv~G~dvL~~Ie~~~td~~~rP~~~I~I~~~ 499 (597)
+|+|+||+.++++++|||||++.++|+||++|+|||+|++|||||++|++++++.+++|..+|+|.++
T Consensus 81 ~G~l~ma~~~~~s~~SqFfIt~~~~p~Ldg~~tvFG~V~~G~dvl~~I~~~~~~~~~~P~~~i~I~~~ 148 (148)
T cd01927 81 PYTLSMANAGPNTNGSQFFITTVATPWLDNKHTVFGRVVKGMDVVQRIENVKTDKNDRPYEDIKIINI 148 (148)
T ss_pred CeEEEEeeCCCCCCCceEEEEcCCCcccCCCceEEEEEEcCHHHHHHHHcCCCCCCCCCcCCeEEEeC
Confidence 99999999999999999999999999999999999999999999999999999988999999999864
No 12
>COG0652 PpiB Peptidyl-prolyl cis-trans isomerase (rotamase) - cyclophilin family [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4.4e-43 Score=331.11 Aligned_cols=148 Identities=47% Similarity=0.794 Sum_probs=135.9
Q ss_pred EEEEEeCeeEEEEeCCCCChhhHHHHHHHHhccccCCceEEEeecCcEEEecCCCCC-CCCCCccCCCCCCCcccccccC
Q 007574 351 VQLHTTHGDLNIELHCDITPRSCENFITLCERGYYNGVAFHRSIRNFMIQGGDPTGT-GRGGESIWGKPFKDEVNSKLLH 429 (597)
Q Consensus 351 V~l~T~~G~I~IEL~~d~aP~tv~NFl~L~~~g~Y~gt~fhRvi~~f~IQgGdptg~-g~gg~si~g~~f~dE~~~~l~h 429 (597)
|.++|+.|+|+|+||++.||+||+||+.||+.|||+|+.|||||++||||||||+++ |.||+ +.+|++|+ ....|
T Consensus 2 v~~~t~~G~I~ieL~~~~aP~Tv~NF~~l~~~g~Ydg~~FHRVi~~FmiQgGd~~~~~g~gg~---~~~f~~E~-~~~~~ 77 (158)
T COG0652 2 VILETNKGDITIELYPDKAPKTVANFLQLVKEGFYDGTIFHRVIPGFMIQGGDPTGGDGTGGP---GPPFKDEN-FALNG 77 (158)
T ss_pred ceeeccCCCEEEEECCCcCcHHHHHHHHHHHcCCCCCceEEEeecCceeecCCCCCCCCCCCC---CCCCcccc-ccccc
Confidence 679999999999999999999999999999999999999999999999999999977 88888 48999994 44555
Q ss_pred CC--ccEEEEecCC-CCCCCcceEEeccCCCCCCCCCcEEEEEEcChHHHHHHhcCCCCCC----CCCccccEEeEEEEE
Q 007574 430 SG--RGVVSMANSG-PHTNGSQFFILYKSATHLNYKHTVFGGVVGGLTTLAAMEKVPVDEN----DRPLEEIKITGVTVF 502 (597)
Q Consensus 430 ~~--rG~lsman~g-~ntngSqFFItl~~~p~LD~k~tVFGrVv~G~dvL~~Ie~~~td~~----~rP~~~I~I~~~~Vl 502 (597)
++ ||+|||||.+ ||+|+|||||++.+.||||++|+|||+|++|||||++|+++.+... +.|..+++|..+.++
T Consensus 78 ~~~~~G~lsMA~~g~P~t~~SQFFI~~~~~~~Ld~~ytVFG~Vv~GmdvvdkI~~~~~~~~~~~~~~~~~~~~i~~~~~~ 157 (158)
T COG0652 78 DRHKRGTLSMARAGDPNSNGSQFFITVVDNPFLDGKYTVFGQVVEGMDVVDKIKNGDTDDSGYVQDVPADPVKILSVKIV 157 (158)
T ss_pred ccCCcceEeEcccCCcCCccCeEEEEecCCcccCCCCcEEEEEehhHHHHHHHHcCCccCCCcccCCCCCCeEEeeeeee
Confidence 55 9999999999 9999999999999999999999999999999999999999888753 466788888887765
No 13
>KOG0885 consensus Peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.4e-43 Score=361.77 Aligned_cols=174 Identities=45% Similarity=0.866 Sum_probs=166.3
Q ss_pred CCCcceEEEEEEeCeeEEEEeCCCCChhhHHHHHHHHhccccCCceEEEeecCcEEEecCCCCCCCCCCccCCCCCCCcc
Q 007574 344 NPKKKGYVQLHTTHGDLNIELHCDITPRSCENFITLCERGYYNGVAFHRSIRNFMIQGGDPTGTGRGGESIWGKPFKDEV 423 (597)
Q Consensus 344 ~~k~~~~V~l~T~~G~I~IEL~~d~aP~tv~NFl~L~~~g~Y~gt~fhRvi~~f~IQgGdptg~g~gg~si~g~~f~dE~ 423 (597)
-|...|.|.|.|+.|+|.||||+..||++|.||++||..|||+|+.|||++|+|++|||||+|+|+||+||||.+|.+|+
T Consensus 8 EP~ttgkvil~TT~G~I~iELW~kE~P~acrnFiqKOGegyy~nt~fhrlvp~f~~Qggdp~~~gtGgesiyg~~fadE~ 87 (439)
T KOG0885|consen 8 EPPTTGKVILKTTKGDIDIELWAKECPKACRNFIQLCLEGYYDNTEFHRLVPGFLVQGGDPTGTGTGGESIYGRPFADEF 87 (439)
T ss_pred CCCccceEEEEeccCceeeeehhhhhhHHHHHHHHHHHhccccCceeeeeccchhcccCCCCCCCCCccccccccchhhc
Confidence 46789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccCCCccEEEEecCCCCCCCcceEEeccCCCCCCCCCcEEEEEEc-ChHHHHHHhcCCCCCCCCCccccEEeEEEEE
Q 007574 424 NSKLLHSGRGVVSMANSGPHTNGSQFFILYKSATHLNYKHTVFGGVVG-GLTTLAAMEKVPVDENDRPLEEIKITGVTVF 502 (597)
Q Consensus 424 ~~~l~h~~rG~lsman~g~ntngSqFFItl~~~p~LD~k~tVFGrVv~-G~dvL~~Ie~~~td~~~rP~~~I~I~~~~Vl 502 (597)
+++|++++||+|+|||.+.+.|||||||||+++|||+++|||||+|++ -+..+-+|..+.++.++||..+.+|.+|.|+
T Consensus 88 h~Rlrf~rrGlvgmana~~~~ngsqFfftl~~~~el~nk~tiFGKVtGdtIYn~lri~e~eida~~Rp~~p~kI~s~EV~ 167 (439)
T KOG0885|consen 88 HPRLRFNRRGLVGMANAGNDDNGSQFFFTLGDTPELNNKHTIFGKVTGDTIYNMLRISEVEIDADDRPVDPPKIKSVEVL 167 (439)
T ss_pred CcceeeeccceeeecccCCCCCCceEEEEecCChHhcccCceeeeecchhhhhhhhhcccccccccCCCCccceeeeEee
Confidence 999999999999999999999999999999999999999999999997 4778889999999999999999999999999
Q ss_pred eCCCCCCChhhHHHH
Q 007574 503 VNPYSEPDEEEEEEK 517 (597)
Q Consensus 503 ~dPf~~~~~~~~~~~ 517 (597)
.|||+++...+.+++
T Consensus 168 ~npFdDI~pr~~r~~ 182 (439)
T KOG0885|consen 168 INPFDDIKPRELRKE 182 (439)
T ss_pred cCchhhcchhhhhcc
Confidence 999999987755443
No 14
>cd01922 cyclophilin_SpCYP2_like cyclophilin_SpCYP2_like: cyclophilin 2-like peptidylprolyl cis- trans isomerase (PPIase) domain similar to Schizosaccharomyces pombe cyp-2. These proteins bind their respective SNW chromatin binding protein in autologous systems, in a CsA independent manner indicating interaction with a surface outside the PPIase active site. SNW proteins play a basic and broad range role in signaling.
Probab=100.00 E-value=2.1e-42 Score=325.07 Aligned_cols=144 Identities=53% Similarity=0.990 Sum_probs=140.3
Q ss_pred EEEeCeeEEEEeCCCCChhhHHHHHHHHhccccCCceEEEeecCcEEEecCCCCCCCCCCccCCCCCCCcccccccCCCc
Q 007574 353 LHTTHGDLNIELHCDITPRSCENFITLCERGYYNGVAFHRSIRNFMIQGGDPTGTGRGGESIWGKPFKDEVNSKLLHSGR 432 (597)
Q Consensus 353 l~T~~G~I~IEL~~d~aP~tv~NFl~L~~~g~Y~gt~fhRvi~~f~IQgGdptg~g~gg~si~g~~f~dE~~~~l~h~~r 432 (597)
|+|+.|+|+||||++.||++|+||+.||+.|||+++.|||++++|||||||+.++|.++.++||.+|++|+...++|+++
T Consensus 2 i~T~~G~i~ieL~~~~aP~t~~nF~~L~~~g~Y~~~~f~Rvi~~f~iq~Gd~~~~g~~~~~~~~~~~~~e~~~~~~h~~~ 81 (146)
T cd01922 2 LETTMGEITLELYWNHAPKTCKNFYELAKRGYYNGTIFHRLIKDFMIQGGDPTGTGRGGASIYGKKFEDEIHPELKHTGA 81 (146)
T ss_pred eEeccccEEEEEcCCCCcHHHHHHHHHHhcCCcCCcEEEEEcCCcEEEecccCCCCCCcccccCCCcccccccCcCCCCC
Confidence 78999999999999999999999999999999999999999999999999999999999999999999998888999999
Q ss_pred cEEEEecCCCCCCCcceEEeccCCCCCCCCCcEEEEEEcChHHHHHHhcCCCCCCCCCccccEEe
Q 007574 433 GVVSMANSGPHTNGSQFFILYKSATHLNYKHTVFGGVVGGLTTLAAMEKVPVDENDRPLEEIKIT 497 (597)
Q Consensus 433 G~lsman~g~ntngSqFFItl~~~p~LD~k~tVFGrVv~G~dvL~~Ie~~~td~~~rP~~~I~I~ 497 (597)
|+|+|++.++++++|||||++.++|+||++|+|||+|++|||||++|++++++ +++|..+|+|.
T Consensus 82 G~l~ma~~~~~s~~sqFfIt~~~~p~Ld~~~tvFG~V~~G~dvl~~I~~~~~~-~~~P~~~I~I~ 145 (146)
T cd01922 82 GILSMANAGPNTNGSQFFITLAPTPWLDGKHTIFGRVSKGMKVIENMVEVQTQ-TDRPIDEVKIL 145 (146)
T ss_pred eEEEEeeCCCCCCccEEEEEcCCCcccCCCCCEEEEEEcCHHHHHHHHhCCCC-CCCcCCCeEEe
Confidence 99999999999999999999999999999999999999999999999999998 88999999996
No 15
>KOG0879 consensus U-snRNP-associated cyclophilin type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=5.9e-42 Score=308.41 Aligned_cols=146 Identities=45% Similarity=0.772 Sum_probs=141.8
Q ss_pred EeCeeEEEEeCCCCChhhHHHHHHHHhccc--------cCCceEEEeecCcEEEecCCC-CCCCCCCccCCCCCCCcccc
Q 007574 355 TTHGDLNIELHCDITPRSCENFITLCERGY--------YNGVAFHRSIRNFMIQGGDPT-GTGRGGESIWGKPFKDEVNS 425 (597)
Q Consensus 355 T~~G~I~IEL~~d~aP~tv~NFl~L~~~g~--------Y~gt~fhRvi~~f~IQgGdpt-g~g~gg~si~g~~f~dE~~~ 425 (597)
+..|+|.||||.|.+|+|++||++.|.+.| |+++.|||||++|||||||.. |.|+|-.||||.+|+|| ++
T Consensus 22 ~~~GrikieLFadivPkTAENFRQFCTGE~r~~g~PiGYK~~tFHRvIkdFMiQgGDFv~gDGtG~~sIy~~~F~DE-NF 100 (177)
T KOG0879|consen 22 RPIGRIKIELFADIVPKTAENFRQFCTGEYRKDGVPIGYKNSTFHRVIKDFMIQGGDFVNGDGTGVASIYGSTFPDE-NF 100 (177)
T ss_pred EEcceEEEEEeeccChhhHHHHHhhcccccccCCccccccccchHHHhhhheeccCceecCCCceEEEEcCCCCCCc-ce
Confidence 678999999999999999999999998776 999999999999999999987 88999999999999999 89
Q ss_pred cccCCCccEEEEecCCCCCCCcceEEeccCCCCCCCCCcEEEEEEcChHHHHHHhcCCCCCCCCCccccEEeEEEE
Q 007574 426 KLLHSGRGVVSMANSGPHTNGSQFFILYKSATHLNYKHTVFGGVVGGLTTLAAMEKVPVDENDRPLEEIKITGVTV 501 (597)
Q Consensus 426 ~l~h~~rG~lsman~g~ntngSqFFItl~~~p~LD~k~tVFGrVv~G~dvL~~Ie~~~td~~~rP~~~I~I~~~~V 501 (597)
.|+|+++|+|||||+|+++||.|||||...+.|||++|+|||||++|+.++++||.+++.++++|.-+|.|..|+.
T Consensus 101 tlkH~~PGlLSMANsG~~tNGCQFFITcakcdfLD~KHVVFGrvldGlli~rkIEnvp~G~NnkPKl~v~i~qCGe 176 (177)
T KOG0879|consen 101 TLKHDGPGLLSMANSGKDTNGCQFFITCAKCDFLDGKHVVFGRVLDGLLIMRKIENVPTGPNNKPKLPVVIVQCGE 176 (177)
T ss_pred eeecCCCceeeccccCCCCCCceEEEEecccccccCceEEEeeeehhhhhhhhhhcCCCCCCCCCCCcEEEeeccc
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999974
No 16
>PLN03149 peptidyl-prolyl isomerase H (cyclophilin H); Provisional
Probab=100.00 E-value=1.9e-39 Score=316.40 Aligned_cols=146 Identities=45% Similarity=0.776 Sum_probs=138.2
Q ss_pred eCeeEEEEeCCCCChhhHHHHHHHHhccc--------cCCceEEEeecCcEEEecCCC-CCCCCCCccCCCCCCCccccc
Q 007574 356 THGDLNIELHCDITPRSCENFITLCERGY--------YNGVAFHRSIRNFMIQGGDPT-GTGRGGESIWGKPFKDEVNSK 426 (597)
Q Consensus 356 ~~G~I~IEL~~d~aP~tv~NFl~L~~~g~--------Y~gt~fhRvi~~f~IQgGdpt-g~g~gg~si~g~~f~dE~~~~ 426 (597)
+.|+|+||||.+.||+||+||+.||.+.| |+++.||||+++|||||||+. ++|.|+.++||..|++| ...
T Consensus 31 ~~G~i~ieL~~~~aP~t~~NF~~Lc~g~~~~~g~~~~Y~~~~fhrVi~~f~iqgGd~~~~~g~g~~~~~g~~f~~e-~~~ 109 (186)
T PLN03149 31 PAGRIKMELFADIAPKTAENFRQFCTGEFRKAGLPQGYKGCQFHRVIKDFMIQGGDFLKGDGTGCVSIYGSKFEDE-NFI 109 (186)
T ss_pred ccccEEEEEcCCCCcHHHHHHHHHHhhhccccCcccccCCcEEEEEcCCcEEEcCCcccCCCCCcccccCCccCCc-ccc
Confidence 67999999999999999999999997654 999999999999999999975 78899999999999998 467
Q ss_pred ccCCCccEEEEecCCCCCCCcceEEeccCCCCCCCCCcEEEEEE-cChHHHHHHhcCCCCCCCCCccccEEeEEEEE
Q 007574 427 LLHSGRGVVSMANSGPHTNGSQFFILYKSATHLNYKHTVFGGVV-GGLTTLAAMEKVPVDENDRPLEEIKITGVTVF 502 (597)
Q Consensus 427 l~h~~rG~lsman~g~ntngSqFFItl~~~p~LD~k~tVFGrVv-~G~dvL~~Ie~~~td~~~rP~~~I~I~~~~Vl 502 (597)
+.|+.+|+|||++.++++++||||||+.++|+||++|+|||+|+ +||+||++|++++++.+++|..+|+|.+|+++
T Consensus 110 ~~h~~~G~lsma~~g~~s~~sqFfIt~~~~p~Ldg~~tVFG~Vi~eG~dvl~~I~~~~~~~~~~P~~~i~I~~cG~~ 186 (186)
T PLN03149 110 AKHTGPGLLSMANSGPNTNGCQFFITCAKCDWLDNKHVVFGRVLGDGLLVVRKIENVATGPNNRPKLACVISECGEM 186 (186)
T ss_pred cccCCCCEEEEeeCCCCCcccEEEEECCCCCccCCCceEEEEEEECcHHHHHHHHcCCCCCCCCCcCCeEEEeCEeC
Confidence 88999999999999999999999999999999999999999999 79999999999999989999999999999974
No 17
>PTZ00221 cyclophilin; Provisional
Probab=100.00 E-value=2.6e-39 Score=326.11 Aligned_cols=153 Identities=31% Similarity=0.465 Sum_probs=140.3
Q ss_pred eCeeEEEEeCCCCChhhHHHHHHHHhcc-----------ccCCceEEEeecC-cEEEecCCCCCCCCCCccCCCCCCCcc
Q 007574 356 THGDLNIELHCDITPRSCENFITLCERG-----------YYNGVAFHRSIRN-FMIQGGDPTGTGRGGESIWGKPFKDEV 423 (597)
Q Consensus 356 ~~G~I~IEL~~d~aP~tv~NFl~L~~~g-----------~Y~gt~fhRvi~~-f~IQgGdptg~g~gg~si~g~~f~dE~ 423 (597)
+.|+|+||||.+.||+||+||+.||++. +|+++.||||+++ ||||+||+.+ ++.++||.+|+||
T Consensus 65 ~~GrIvIELf~d~aP~T~eNF~~Lc~g~~g~~~~~g~k~~Y~gt~FhRVi~~~f~iqgGD~~~---~g~s~~G~~f~dE- 140 (249)
T PTZ00221 65 LAGRLVFELFEDVVPETVENFRALITGSCGIDTNTGVKLDYLYTPVHHVDRNNNIIVLGELDS---FNVSSTGTPIADE- 140 (249)
T ss_pred ecceEEEEEeCCCCcHHHHHHHHHhhcccccccccCcccccCCCEEEEEeCCCCEEEeCCCCC---CCccCCCCcccCc-
Confidence 4688999999999999999999999743 3999999999985 8999999874 3567889999999
Q ss_pred cccccCCCccEEEEecCCCCCCCcceEEeccCCCCCCCCCcEEEEEEcChHHHHHHhcCCCCCCCCCccccEEeEEEEEe
Q 007574 424 NSKLLHSGRGVVSMANSGPHTNGSQFFILYKSATHLNYKHTVFGGVVGGLTTLAAMEKVPVDENDRPLEEIKITGVTVFV 503 (597)
Q Consensus 424 ~~~l~h~~rG~lsman~g~ntngSqFFItl~~~p~LD~k~tVFGrVv~G~dvL~~Ie~~~td~~~rP~~~I~I~~~~Vl~ 503 (597)
++.++|+.+|+|||||.|+++|||||||||.++||||++|+|||+|++||+||++|++++++..++|..+|+|.+|+++.
T Consensus 141 ~~~~~h~~~G~LsMan~GpntngSQFfITl~~~p~LDgk~vVFGrVveGmdVv~kIe~v~~d~~grP~~~V~I~~Cgvl~ 220 (249)
T PTZ00221 141 GYRHRHTERGLLTMISEGPHTSGSVFGITLGPSPSLDFKQVVFGKAVDDLSLLEKLESLPLDDVGRPLLPVTVSFCGALT 220 (249)
T ss_pred cccccCCCCCEEEeCcCCCCCccceEEEECCCCCccCCCceEEEEEEeCHHHHHHHHcCCcCCCCCCCCCeEEEECeEec
Confidence 56889999999999999999999999999999999999999999999999999999999998889999999999999999
Q ss_pred CCCCCCChh
Q 007574 504 NPYSEPDEE 512 (597)
Q Consensus 504 dPf~~~~~~ 512 (597)
+|-+.....
T Consensus 221 ~~~p~~~~~ 229 (249)
T PTZ00221 221 GEKPPGRQQ 229 (249)
T ss_pred CCCCCcccc
Confidence 987665443
No 18
>KOG0415 consensus Predicted peptidyl prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=7.3e-40 Score=333.61 Aligned_cols=162 Identities=45% Similarity=0.764 Sum_probs=155.1
Q ss_pred EEEEEEeCeeEEEEeCCCCChhhHHHHHHHHhccccCCceEEEeecCcEEEecCCCCCCCCCCccCC-------CCCCCc
Q 007574 350 YVQLHTTHGDLNIELHCDITPRSCENFITLCERGYYNGVAFHRSIRNFMIQGGDPTGTGRGGESIWG-------KPFKDE 422 (597)
Q Consensus 350 ~V~l~T~~G~I~IEL~~d~aP~tv~NFl~L~~~g~Y~gt~fhRvi~~f~IQgGdptg~g~gg~si~g-------~~f~dE 422 (597)
-|.|+|++|+|+|.||.+.+|.+|.|||+||+..||+.|.||-|.++|.+|.|||+|+|.||.|||| ..|.+|
T Consensus 2 sVlieTtlGDlvIDLf~~erP~~clNFLKLCk~KYYN~clfh~vq~~f~aQTGDPtGtG~GG~si~~~lyG~q~rffeaE 81 (479)
T KOG0415|consen 2 SVLIETTLGDLVIDLFVKERPRTCLNFLKLCKIKYYNFCLFHTVQRDFTAQTGDPTGTGDGGESIYGVLYGEQARFFEAE 81 (479)
T ss_pred cEEEEeecccEEeeeecccCcHHHHHHHHHHhHhhcccceeeeccccceeecCCCCCCCCCcceeeeecccccchhhhhh
Confidence 3789999999999999999999999999999999999999999999999999999999999999996 358899
Q ss_pred ccccccCCCccEEEEecCCCCCCCcceEEeccCC-CCCCCCCcEEEEEEcChHHHHHHhcCCCCCCCCCccccEEeEEEE
Q 007574 423 VNSKLLHSGRGVVSMANSGPHTNGSQFFILYKSA-THLNYKHTVFGGVVGGLTTLAAMEKVPVDENDRPLEEIKITGVTV 501 (597)
Q Consensus 423 ~~~~l~h~~rG~lsman~g~ntngSqFFItl~~~-p~LD~k~tVFGrVv~G~dvL~~Ie~~~td~~~rP~~~I~I~~~~V 501 (597)
+.+.++|...|+|||++.|.|.+||||||||++. ..||++|+|||+|++|||+|.+|+.+-+|++++|.++|+|.++.|
T Consensus 82 ~~p~l~Hsk~G~vsmvs~g~n~~gSQF~iTlgenLdyLDg~htvfGqV~EG~dtl~kiNea~vD~~~rPykdIRI~HTii 161 (479)
T KOG0415|consen 82 FLPKLKHSKMGTVSMVSAGENLNGSQFFITLGENLDYLDGKHTVFGQVAEGFDTLTKINEAIVDPKNRPYKDIRIKHTII 161 (479)
T ss_pred hcccccccccceEEeecCCcccccceEEEEccccccccccccceeeehhhhHHHHHHHHHHhcCCCCCcccceeeeeeEE
Confidence 9999999999999999999999999999999965 699999999999999999999999999999999999999999999
Q ss_pred EeCCCCCCCh
Q 007574 502 FVNPYSEPDE 511 (597)
Q Consensus 502 l~dPf~~~~~ 511 (597)
|.|||+++..
T Consensus 162 LdDPFddpp~ 171 (479)
T KOG0415|consen 162 LDDPFDDPPD 171 (479)
T ss_pred ecCCCCCchh
Confidence 9999987743
No 19
>cd01926 cyclophilin_ABH_like cyclophilin_ABH_like: Cyclophilin A, B and H-like cyclophilin-type peptidylprolyl cis- trans isomerase (PPIase) domain. This family represents the archetypal cystolic cyclophilin similar to human cyclophilins A, B and H. PPIase is an enzyme which accelerates protein folding by catalyzing the cis-trans isomerization of the peptide bonds preceding proline residues. These enzymes have been implicated in protein folding processes which depend on catalytic /chaperone-like activities. As cyclophilins, Human hCyP-A, human cyclophilin-B (hCyP-19), S. cerevisiae Cpr1 and C. elegans Cyp-3, are inhibited by the immunosuppressive drug cyclopsporin A (CsA). CsA binds to the PPIase active site. Cyp-3. S. cerevisiae Cpr1 interacts with the Rpd3 - Sin3 complex and in addition is a component of the Set3 complex. S. cerevisiae Cpr1 has also been shown to have a role in Zpr1p nuclear transport. Human cyclophilin H associates with the [U4/U6.U5] tri-snRNP particles of the spl
Probab=100.00 E-value=3.4e-39 Score=308.85 Aligned_cols=150 Identities=46% Similarity=0.808 Sum_probs=140.8
Q ss_pred eEEEEE---EeCeeEEEEeCCCCChhhHHHHHHHHhc--c------ccCCceEEEeecCcEEEecCCC-CCCCCCCccCC
Q 007574 349 GYVQLH---TTHGDLNIELHCDITPRSCENFITLCER--G------YYNGVAFHRSIRNFMIQGGDPT-GTGRGGESIWG 416 (597)
Q Consensus 349 ~~V~l~---T~~G~I~IEL~~d~aP~tv~NFl~L~~~--g------~Y~gt~fhRvi~~f~IQgGdpt-g~g~gg~si~g 416 (597)
.|+.|. ++.|+|+||||++.||++|+||+.||++ + ||+++.||||+++|||||||+. ++|.++.++||
T Consensus 3 v~~di~i~~~~~G~i~ieL~~~~aP~~~~nF~~L~~~~~g~~~~~~~Y~~~~f~Rv~~~~~iq~Gd~~~~~g~~~~~~~g 82 (164)
T cd01926 3 VFFDITIGGEPAGRIVMELFADVVPKTAENFRALCTGEKGKGGKPFGYKGSTFHRVIPDFMIQGGDFTRGNGTGGKSIYG 82 (164)
T ss_pred EEEEEeECCeeceeEEEEEeCCCCCHHHHHHHHHhcccCCCcccccccCCCEEEEEeCCcEEEcCCccCCCCCCCCcccC
Confidence 466666 5899999999999999999999999973 4 8999999999999999999986 78889999999
Q ss_pred CCCCCcccccccCCCccEEEEecCCCCCCCcceEEeccCCCCCCCCCcEEEEEEcChHHHHHHhcCCCCCCCCCccccEE
Q 007574 417 KPFKDEVNSKLLHSGRGVVSMANSGPHTNGSQFFILYKSATHLNYKHTVFGGVVGGLTTLAAMEKVPVDENDRPLEEIKI 496 (597)
Q Consensus 417 ~~f~dE~~~~l~h~~rG~lsman~g~ntngSqFFItl~~~p~LD~k~tVFGrVv~G~dvL~~Ie~~~td~~~rP~~~I~I 496 (597)
..|++| ...+.|+.+|+|+||+.++++++|||||++.++++||++|+|||||++|||||++|++++++ +++|..+|+|
T Consensus 83 ~~~~~e-~~~~~h~~~G~lsma~~~~~~~~sqFfIt~~~~~~Ld~~~tvFG~V~~G~dvl~~i~~~~~~-~~~P~~~i~I 160 (164)
T cd01926 83 EKFPDE-NFKLKHTGPGLLSMANAGPNTNGSQFFITTVKTPWLDGKHVVFGKVVEGMDVVKKIENVGSG-NGKPKKKVVI 160 (164)
T ss_pred CccCCC-CccccCCCccEEEeeECCCCCcccEEEEEeCCCCccCCcccEEEEEEEcHHHHHHHHcCCCC-CCCCcCCeEE
Confidence 999999 57889999999999999999999999999999999999999999999999999999999998 8999999999
Q ss_pred eEEE
Q 007574 497 TGVT 500 (597)
Q Consensus 497 ~~~~ 500 (597)
.+|+
T Consensus 161 ~~cG 164 (164)
T cd01926 161 ADCG 164 (164)
T ss_pred EECC
Confidence 9985
No 20
>PRK10903 peptidyl-prolyl cis-trans isomerase A (rotamase A); Provisional
Probab=100.00 E-value=1.1e-38 Score=311.85 Aligned_cols=153 Identities=32% Similarity=0.548 Sum_probs=136.9
Q ss_pred cceEEEEEEeCeeEEEEeCCCCChhhHHHHHHHHhccccCCceEEEeecCcEEEecCCCCCCCCCCccCCCCCCCccccc
Q 007574 347 KKGYVQLHTTHGDLNIELHCDITPRSCENFITLCERGYYNGVAFHRSIRNFMIQGGDPTGTGRGGESIWGKPFKDEVNSK 426 (597)
Q Consensus 347 ~~~~V~l~T~~G~I~IEL~~d~aP~tv~NFl~L~~~g~Y~gt~fhRvi~~f~IQgGdptg~g~gg~si~g~~f~dE~~~~ 426 (597)
....|.|+|+.|+|+||||++.||+||+||+.||+.|||+|+.|||++++|||||||+.+... ...++.+|.+|....
T Consensus 27 ~~~~v~l~T~~G~i~ieL~~~~aP~t~~NF~~L~~~g~Ydg~~FhRvi~~f~iQgG~~~~~~~--~~~~~~~~~~e~~~~ 104 (190)
T PRK10903 27 GDPHVLLTTSAGNIELELNSQKAPVSVKNFVDYVNSGFYNNTTFHRVIPGFMIQGGGFTEQMQ--QKKPNPPIKNEADNG 104 (190)
T ss_pred CCcEEEEEeccccEEEEEeCCCCcHHHHHHHHHHhcCCcCCcEEEEEeCCceEEeCCcCCCCC--CCCCCCcccCccccc
Confidence 455689999999999999999999999999999999999999999999999999999875432 234577899996554
Q ss_pred ccCCCccEEEEecCC-CCCCCcceEEeccCCCCCCC-----CCcEEEEEEcChHHHHHHhcCCCCC----CCCCccccEE
Q 007574 427 LLHSGRGVVSMANSG-PHTNGSQFFILYKSATHLNY-----KHTVFGGVVGGLTTLAAMEKVPVDE----NDRPLEEIKI 496 (597)
Q Consensus 427 l~h~~rG~lsman~g-~ntngSqFFItl~~~p~LD~-----k~tVFGrVv~G~dvL~~Ie~~~td~----~~rP~~~I~I 496 (597)
+ |+.+|+|+||+.+ +++|+|||||++.++++||+ +|+|||+|++|||||++|++++++. .++|..+|+|
T Consensus 105 l-~~~~G~lama~~~~~~sn~SQFfIt~~~~~~ld~~~~dg~ytvFG~V~eG~dvl~~I~~~~~~~~~~~~~~P~~~v~I 183 (190)
T PRK10903 105 L-RNTRGTIAMARTADKDSATSQFFINVADNAFLDHGQRDFGYAVFGKVVKGMDVADKISQVPTHDVGPYQNVPSKPVVI 183 (190)
T ss_pred C-cCCCcEEEeCCCCCCCCcccEEEEECcCcccccCCccCCCccEEEEEecCHHHHHHHHcCCCCCCCCCCCcccCCeEE
Confidence 4 5679999999965 99999999999999999995 8999999999999999999999976 5799999999
Q ss_pred eEEEEE
Q 007574 497 TGVTVF 502 (597)
Q Consensus 497 ~~~~Vl 502 (597)
.+|+|+
T Consensus 184 ~~~~v~ 189 (190)
T PRK10903 184 LSAKVL 189 (190)
T ss_pred EEEEEe
Confidence 999886
No 21
>PRK10791 peptidyl-prolyl cis-trans isomerase B (rotamase B); Provisional
Probab=100.00 E-value=1.2e-38 Score=304.94 Aligned_cols=149 Identities=37% Similarity=0.626 Sum_probs=132.6
Q ss_pred EEEEEeCeeEEEEeCCCCChhhHHHHHHHHhccccCCceEEEeecCcEEEecCCCCCCCCCCccCCCCCCCcccccccCC
Q 007574 351 VQLHTTHGDLNIELHCDITPRSCENFITLCERGYYNGVAFHRSIRNFMIQGGDPTGTGRGGESIWGKPFKDEVNSKLLHS 430 (597)
Q Consensus 351 V~l~T~~G~I~IEL~~d~aP~tv~NFl~L~~~g~Y~gt~fhRvi~~f~IQgGdptg~g~gg~si~g~~f~dE~~~~l~h~ 430 (597)
|.|+|+.|+|+|+||++.||+||+||+.||+.+||+++.||||+++|||||||+... . +...|+.+|++|.+..+.|
T Consensus 2 v~~~T~~G~i~ieL~~~~aP~t~~nF~~L~~~g~Yd~~~fhRvi~~f~iQgGd~~~~-~-~~~~~~~~~~~e~~~~~~~- 78 (164)
T PRK10791 2 VTFHTNHGDIVIKTFDDKAPETVKNFLDYCREGFYNNTIFHRVINGFMIQGGGFEPG-M-KQKATKEPIKNEANNGLKN- 78 (164)
T ss_pred EEEEEccccEEEEEeCCCCcHHHHHHHHHHhcCCcCCcEEEEEecCcEEEeCCcCCC-C-CcCCCCCCcCCcccccccC-
Confidence 689999999999999999999999999999999999999999999999999997522 1 1234678899997666666
Q ss_pred CccEEEEecCC-CCCCCcceEEeccCCCCCC--------CCCcEEEEEEcChHHHHHHhcCCCCC----CCCCccccEEe
Q 007574 431 GRGVVSMANSG-PHTNGSQFFILYKSATHLN--------YKHTVFGGVVGGLTTLAAMEKVPVDE----NDRPLEEIKIT 497 (597)
Q Consensus 431 ~rG~lsman~g-~ntngSqFFItl~~~p~LD--------~k~tVFGrVv~G~dvL~~Ie~~~td~----~~rP~~~I~I~ 497 (597)
.+|+||||+.+ |++|+|||||++.++++|| ++|+|||+|++|||||++|++++++. +++|..+|+|.
T Consensus 79 ~~G~lsma~~~~p~s~~SQFfI~~~~~~~ld~~~~~~d~~~~tvFG~V~eG~dvl~~I~~~~~~~~~~~~~~P~~~v~I~ 158 (164)
T PRK10791 79 TRGTLAMARTQAPHSATAQFFINVVDNDFLNFSGESLQGWGYCVFAEVVEGMDVVDKIKGVATGRSGMHQDVPKEDVIIE 158 (164)
T ss_pred CCcEEEECCCCCcCCccceEEEEecCchhhcccccccCCCCccEEEEEecCHHHHHHHHcCcCCCCCccCCCcCCCeEEE
Confidence 79999999975 9999999999999998886 27999999999999999999999976 36999999999
Q ss_pred EEEEE
Q 007574 498 GVTVF 502 (597)
Q Consensus 498 ~~~Vl 502 (597)
+|.|.
T Consensus 159 ~~~i~ 163 (164)
T PRK10791 159 SVTVS 163 (164)
T ss_pred EEEEe
Confidence 99874
No 22
>PTZ00060 cyclophilin; Provisional
Probab=100.00 E-value=2.6e-38 Score=307.76 Aligned_cols=146 Identities=46% Similarity=0.741 Sum_probs=138.1
Q ss_pred EeCeeEEEEeCCCCChhhHHHHHHHHh---------ccccCCceEEEeecCcEEEecCCC-CCCCCCCccCCCCCCCccc
Q 007574 355 TTHGDLNIELHCDITPRSCENFITLCE---------RGYYNGVAFHRSIRNFMIQGGDPT-GTGRGGESIWGKPFKDEVN 424 (597)
Q Consensus 355 T~~G~I~IEL~~d~aP~tv~NFl~L~~---------~g~Y~gt~fhRvi~~f~IQgGdpt-g~g~gg~si~g~~f~dE~~ 424 (597)
++.|+|+||||++.||++|+||+.||+ .+||+++.||||+|+|||||||+. ++|.++.++||..+++| .
T Consensus 27 ~~~G~ivIeL~~d~aP~t~~nF~~L~~g~~~~~~g~~~~Y~~~~fhRvi~~~~iqgGd~~~~~g~~g~~~~g~~~~~e-~ 105 (183)
T PTZ00060 27 APAGRIVFELFSDVTPKTAENFRALCIGDKVGSSGKNLHYKGSIFHRIIPQFMCQGGDITNHNGTGGESIYGRKFTDE-N 105 (183)
T ss_pred EeCceEEEEEcCCCCcHHHHHHHHHhcCCcccccCcccccCCeEEEEEcCCCeEEeCCccCCCCCCCCcccccccCCc-c
Confidence 578999999999999999999999996 469999999999999999999987 67899999999999999 6
Q ss_pred ccccCCCccEEEEecCCCCCCCcceEEeccCCCCCCCCCcEEEEEEcChHHHHHHhcCCCCCCCCCccccEEeEEEEE
Q 007574 425 SKLLHSGRGVVSMANSGPHTNGSQFFILYKSATHLNYKHTVFGGVVGGLTTLAAMEKVPVDENDRPLEEIKITGVTVF 502 (597)
Q Consensus 425 ~~l~h~~rG~lsman~g~ntngSqFFItl~~~p~LD~k~tVFGrVv~G~dvL~~Ie~~~td~~~rP~~~I~I~~~~Vl 502 (597)
..+.|+.+|+|+|++.++++++||||||+.++|+||++|+|||+|++|||||++|+++++. +++|..+|+|.+|+++
T Consensus 106 ~~~~h~~~G~lsma~~g~~~~~sqFfIt~~~~~~Ldg~~tvFG~Vi~G~dvl~~I~~~~~~-~~~P~~~v~I~~cg~~ 182 (183)
T PTZ00060 106 FKLKHDQPGLLSMANAGPNTNGSQFFITTVPCPWLDGKHVVFGKVIEGMEVVRAMEKEGTQ-SGYPKKPVVVTDCGEL 182 (183)
T ss_pred ccccCCCCCEEEeccCCCCCCcceEEEEeCCCcccCCCccEEEEEEccHHHHHHHHccCCC-CCCCcCCeEEEEeEEc
Confidence 7789999999999999999999999999999999999999999999999999999999884 6899999999999987
No 23
>KOG0111 consensus Cyclophilin-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=7.5e-39 Score=309.19 Aligned_cols=145 Identities=46% Similarity=0.767 Sum_probs=139.3
Q ss_pred eCeeEEEEeCCCCChhhHHHHHHHH--hccc-cCCceEEEeecCcEEEecCCC-CCCCCCCccCCCCCCCcccccccCCC
Q 007574 356 THGDLNIELHCDITPRSCENFITLC--ERGY-YNGVAFHRSIRNFMIQGGDPT-GTGRGGESIWGKPFKDEVNSKLLHSG 431 (597)
Q Consensus 356 ~~G~I~IEL~~d~aP~tv~NFl~L~--~~g~-Y~gt~fhRvi~~f~IQgGdpt-g~g~gg~si~g~~f~dE~~~~l~h~~ 431 (597)
..|+|+++|..|.+|+|++||..|| +.|| |.|++||||||.||+||||++ ++|+||.||||..|.|| ++.|+|..
T Consensus 149 ~~Gri~~~lrtdv~Pmtaenfr~Lctge~gfgykgssfhriip~fmcqggdftn~ngtggksiygkkfdde-nf~lkht~ 227 (298)
T KOG0111|consen 149 RAGRIVMLLRTDVVPMTAENFRCLCTGEAGFGYKGSSFHRIIPKFMCQGGDFTNGNGTGGKSIYGKKFDDE-NFTLKHTM 227 (298)
T ss_pred ccceEEEeecccCChhhhhhhhhhccccCccCccccchhhhhhhhhccCCccccCCCCCCccccccccccc-ceeeecCC
Confidence 5799999999999999999999999 5677 999999999999999999999 88999999999999999 89999999
Q ss_pred ccEEEEecCCCCCCCcceEEeccCCCCCCCCCcEEEEEEcChHHHHHHhcCCCCCCCCCccccEEeEEEEE
Q 007574 432 RGVVSMANSGPHTNGSQFFILYKSATHLNYKHTVFGGVVGGLTTLAAMEKVPVDENDRPLEEIKITGVTVF 502 (597)
Q Consensus 432 rG~lsman~g~ntngSqFFItl~~~p~LD~k~tVFGrVv~G~dvL~~Ie~~~td~~~rP~~~I~I~~~~Vl 502 (597)
+|+|||||+|+|+||||||||.....|||++|+|||.|++||+||++|++..+ ++++|.+.|+|.+|+.+
T Consensus 228 pgtlsmansgantngsqffict~ktdwldgkhvvfghv~eg~~vvrq~e~qgs-ksgkp~qkv~i~~cge~ 297 (298)
T KOG0111|consen 228 PGTLSMANSGANTNGSQFFICTEKTDWLDGKHVVFGHVVEGMNVVRQVEQQGS-KSGKPQQKVKIVECGEI 297 (298)
T ss_pred CceeeccccCCCCCCceEEEEecccccccCceeEEeeecchHHHHHHHHhccC-CCCCcceEEEEEecccc
Confidence 99999999999999999999999999999999999999999999999999886 58999999999999865
No 24
>cd01920 cyclophilin_EcCYP_like cyclophilin_EcCYP_like: cyclophilin-type A-like peptidylprolyl cis- trans isomerase (PPIase) domain similar to the cytosolic E. coli cyclophilin A and Streptomyces antibioticus SanCyp18. Compared to the archetypal cyclophilin Human cyclophilin A, these have reduced affinity for cyclosporin A. E. coli cyclophilin A has a similar peptidylprolyl cis- trans isomerase activity to the human cyclophilin A. Most members of this subfamily contain a phenylalanine residue at the position equivalent to Human cyclophilin W121, where a tyrptophan has been shown to be important for cyclophilin binding.
Probab=100.00 E-value=9.7e-38 Score=296.20 Aligned_cols=145 Identities=34% Similarity=0.576 Sum_probs=128.4
Q ss_pred EEEEeCeeEEEEeCCCCChhhHHHHHHHHhccccCCceEEEeecCcEEEecCCCCCCCCCCccCCCCCCCcccccccCCC
Q 007574 352 QLHTTHGDLNIELHCDITPRSCENFITLCERGYYNGVAFHRSIRNFMIQGGDPTGTGRGGESIWGKPFKDEVNSKLLHSG 431 (597)
Q Consensus 352 ~l~T~~G~I~IEL~~d~aP~tv~NFl~L~~~g~Y~gt~fhRvi~~f~IQgGdptg~g~gg~si~g~~f~dE~~~~l~h~~ 431 (597)
.|+|+.|+|+||||++.||+||+||+.||+.|||+++.||||+++|||||||+...+.+ ..++.++.+|.... .|+.
T Consensus 1 ~l~T~~G~i~ieL~~~~aP~t~~nF~~L~~~g~Yd~~~fhRvi~~f~iQ~Gd~~~~~~~--~~~~~~~~~e~~~~-~~~~ 77 (155)
T cd01920 1 EFQTSLGDIVVELYDDKAPITVENFLAYVRKGFYDNTIFHRVISGFVIQGGGFTPDLAQ--KETLKPIKNEAGNG-LSNT 77 (155)
T ss_pred CcEecceeEEEEEeCCCCcHHHHHHHHHHhcCCCCCCEEEEEeCCcEEEeCCCCCCCCc--cccCCcccCccccc-ccCC
Confidence 37899999999999999999999999999999999999999999999999998865443 34577888885443 4568
Q ss_pred ccEEEEecCC-CCCCCcceEEeccCCCCCCC-----CCcEEEEEEcChHHHHHHhcCCCCCC----CCCccccEEeEE
Q 007574 432 RGVVSMANSG-PHTNGSQFFILYKSATHLNY-----KHTVFGGVVGGLTTLAAMEKVPVDEN----DRPLEEIKITGV 499 (597)
Q Consensus 432 rG~lsman~g-~ntngSqFFItl~~~p~LD~-----k~tVFGrVv~G~dvL~~Ie~~~td~~----~rP~~~I~I~~~ 499 (597)
+|+||||+.+ +++|+|||||++.++++||+ +|+|||+|++|||||++|++++++.. ++|..+|+|.++
T Consensus 78 ~G~v~ma~~~~~~s~~SqFfI~~~~~~~ld~~~~~~~ytvFG~V~eG~dvl~~I~~~~~~~~~~~~~~p~~~v~i~~~ 155 (155)
T cd01920 78 RGTIAMARTNAPDSATSQFFINLKDNASLDYQNEQWGYTVFGEVTEGMDVVDKIAGVETYSFGSYQDVPVQDVIIESA 155 (155)
T ss_pred ceEEEECCCCCCCCccceEEEECCCchhcCCcccCCCccEEEEEecCHHHHHHHHcCCccCCCCcCCCcCCCeEEEEC
Confidence 9999999975 89999999999999999995 79999999999999999999999764 688888888763
No 25
>cd00317 cyclophilin cyclophilin: cyclophilin-type peptidylprolyl cis- trans isomerases. This family contains eukaryotic, bacterial and archeal proteins which exhibit a peptidylprolyl cis- trans isomerases activity (PPIase, Rotamase) and in addition bind the immunosuppressive drug cyclosporin (CsA). Immunosuppression in vertebrates is believed to be the result of the cyclophilin A-cyclosporin protein drug complex binding to and inhibiting the protein-phosphatase calcineurin. PPIase is an enzyme which accelerates protein folding by catalyzing the cis-trans isomerization of the peptide bonds preceding proline residues. Cyclophilins are a diverse family in terms of function and have been implicated in protein folding processes which depend on catalytic /chaperone-like activities. This group contains human cyclophilin 40, a co-chaperone of the hsp90 chaperone system; human cyclophilin A, a chaperone in the HIV-1 infectious process and; human cyclophilin H, a component of the U4/U6 snRNP
Probab=100.00 E-value=2.2e-36 Score=282.86 Aligned_cols=145 Identities=51% Similarity=0.829 Sum_probs=136.1
Q ss_pred EEEeCeeEEEEeCCCCChhhHHHHHHHHhccccCCceEEEeecCcEEEecCCCCCCCCCCccCCCCCCCcccccccCCCc
Q 007574 353 LHTTHGDLNIELHCDITPRSCENFITLCERGYYNGVAFHRSIRNFMIQGGDPTGTGRGGESIWGKPFKDEVNSKLLHSGR 432 (597)
Q Consensus 353 l~T~~G~I~IEL~~d~aP~tv~NFl~L~~~g~Y~gt~fhRvi~~f~IQgGdptg~g~gg~si~g~~f~dE~~~~l~h~~r 432 (597)
|+|+.|+|+|+||++.+|++|+||+.||+.+||+++.|||++++|+||+||+.+.+.++ +.++..+++|......|+.+
T Consensus 2 ~~T~~G~i~IeL~~~~~P~~~~nF~~l~~~~~Y~~~~f~rv~~~~~iq~Gd~~~~~~~~-~~~~~~~~~E~~~~~~~~~~ 80 (146)
T cd00317 2 LDTTKGRIVIELYGDEAPKTVENFLSLARGGFYDGTTFHRVIPGFMIQGGDPTGTGGGG-SGPGYKFPDENFPLKYHHRR 80 (146)
T ss_pred eEeccCcEEEEEcCCCChHHHHHHHHHHhcCCcCCCEEEEEeCCCeEEECCCCCCCCCC-CcCCCccCCccccCcCcCCC
Confidence 78999999999999999999999999999999999999999999999999998665443 57789999998777778899
Q ss_pred cEEEEecCCCCCCCcceEEeccCCCCCCCCCcEEEEEEcChHHHHHHhcCCCCCCCCCccccEEeE
Q 007574 433 GVVSMANSGPHTNGSQFFILYKSATHLNYKHTVFGGVVGGLTTLAAMEKVPVDENDRPLEEIKITG 498 (597)
Q Consensus 433 G~lsman~g~ntngSqFFItl~~~p~LD~k~tVFGrVv~G~dvL~~Ie~~~td~~~rP~~~I~I~~ 498 (597)
|+|+|++.++++++|||||++.++++||++|+|||+|++||++|++|+.++++++++|..+|+|..
T Consensus 81 G~v~~~~~~~~~~~sqF~Itl~~~~~ld~~~~vfG~V~~G~~vl~~I~~~~~~~~~~P~~~i~I~~ 146 (146)
T cd00317 81 GTLSMANAGPNTNGSQFFITTAPTPHLDGKHTVFGKVVEGMDVVDKIERGDTDENGRPIKPVTISD 146 (146)
T ss_pred cEEEEeeCCCCCcccEEEEECCCCcccCCCceEEEEEeCCHHHHHHHHcCCCCCCCcCcCceEEeC
Confidence 999999999999999999999999999999999999999999999999999999999999999963
No 26
>PF00160 Pro_isomerase: Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD; InterPro: IPR002130 Cyclophilin [] is the major high-affinity binding protein in vertebrates for the immunosuppressive drug cyclosporin A (CSA), but is also found in other organisms. It exhibits a peptidyl-prolyl cis-trans isomerase activity (5.2.1.8 from EC) (PPIase or rotamase). PPIase is an enzyme that accelerates protein folding by catalysing the cis-trans isomerisation of proline imidic peptide bonds in oligopeptides []. It is probable that CSA mediates some of its effects via an forming a tight complex with cyclophilin that inhibits the phosphatase activity of calcineurin [], []. Cyclophilin A is a cytosolic and highly abundant protein. The protein belongs to a family of isozymes, including cyclophilins B and C, and natural killer cell cyclophilin-related protein [, , ]. Major isoforms have been found throughout the cell, including the ER, and some are even secreted. The sequences of the different forms of cyclophilin-type PPIases are well conserved. Note: FKBP's, a family of proteins that bind the immunosuppressive drug FK506, are also PPIases, but their sequence is not at all related to that of cyclophilin (see IPR001179 from INTERPRO).; GO: 0003755 peptidyl-prolyl cis-trans isomerase activity, 0006457 protein folding; PDB: 1Z81_A 1IHG_A 1IIP_A 3PMP_B 3O7T_A 2B71_A 1QNG_A 1QNH_A 2HQJ_A 2RMC_G ....
Probab=100.00 E-value=2.7e-35 Score=277.97 Aligned_cols=149 Identities=50% Similarity=0.874 Sum_probs=134.4
Q ss_pred EEEEEEe-CeeEEEEeCCCCChhhHHHHHHHHhccccCCceEEEeecCcEEEecCCCCCCCCC--CccCCCCCCCcccc-
Q 007574 350 YVQLHTT-HGDLNIELHCDITPRSCENFITLCERGYYNGVAFHRSIRNFMIQGGDPTGTGRGG--ESIWGKPFKDEVNS- 425 (597)
Q Consensus 350 ~V~l~T~-~G~I~IEL~~d~aP~tv~NFl~L~~~g~Y~gt~fhRvi~~f~IQgGdptg~g~gg--~si~g~~f~dE~~~- 425 (597)
||.|+|+ .|+|+||||++.||++|+||++||+.++|+++.|||++++++||+|++.+.+..+ ...++.++++|...
T Consensus 1 ~~~i~t~~~G~i~ieL~~~~aP~~~~nF~~l~~~~~y~g~~f~ri~~~~~i~~G~~~~~~~~~~~~~~~~~~~~~E~~~~ 80 (155)
T PF00160_consen 1 FVDIETSGLGRIVIELFGDEAPKTVENFLRLCTSGFYDGTKFHRIIPNFVIQGGDPTGNGGYGREDSTGGEPIPDEFNPS 80 (155)
T ss_dssp EEEEEETTEEEEEEEEETTTSHHHHHHHHHHHHTTSSTTEBEEEEETTTEEEESSTTTSSSSTSEEBTTBSCBSSSGBTT
T ss_pred CEEEEeCCccCEEEEEeCCCCcHHHHhhehhhcccccCCceeecccccceeeeeeccCCCCcccccccCccccccccccc
Confidence 6899997 9999999999999999999999999999999999999999999999988654411 13345679999753
Q ss_pred cccCCCccEEEEecCC--CCCCCcceEEeccCCCCCCCCCcEEEEEEcChHHHHHHhcCCCCCCCCCccccEEeEEEE
Q 007574 426 KLLHSGRGVVSMANSG--PHTNGSQFFILYKSATHLNYKHTVFGGVVGGLTTLAAMEKVPVDENDRPLEEIKITGVTV 501 (597)
Q Consensus 426 ~l~h~~rG~lsman~g--~ntngSqFFItl~~~p~LD~k~tVFGrVv~G~dvL~~Ie~~~td~~~rP~~~I~I~~~~V 501 (597)
.+.| .+|+|+|++.+ +++++|||||+|.++++||++|+|||+|++||+||++|++++++. +|.++|+|.+|+|
T Consensus 81 ~~~~-~~G~v~~~~~~~~~~~~~sqF~I~l~~~~~ld~~~~vfG~V~~G~~vl~~i~~~~~~~--~p~~~v~I~~cgv 155 (155)
T PF00160_consen 81 LLKH-RRGLVSMARSGKDPNSNGSQFFITLSDAPHLDGKYTVFGRVIEGMDVLDKIEAGPTDE--RPKQDVTISSCGV 155 (155)
T ss_dssp SSSS-STTEEEEEBSSSSTTEBSSEEEEESSCGGGGTTTSEEEEEEEEHHHHHHHHHTSBBTT--EBSSTEEEEEEEE
T ss_pred cccc-cceeeeecccccCCCCCCceEEeeccCCCccccceeeeeEEehhHHHHHHHHCCCCCC--ccCCCeEEEEeEC
Confidence 4556 89999999986 888999999999999999999999999999999999999999876 9999999999997
No 27
>cd01924 cyclophilin_TLP40_like cyclophilin_TLP40_like: cyclophilin-type peptidylprolyl cis- trans isomerases (cyclophilins) similar ot the Spinach thylakoid lumen protein TLP40. Compared to the archetypal cyclophilin Human cyclophilin A, these proteins have similar peptidylprolyl cis- trans isomerase activity and reduced affinity for cyclosporin A. Spinach TLP40 has been shown to have a dual function as a folding catalyst and regulator of dephosphorylation.
Probab=100.00 E-value=6.9e-35 Score=282.04 Aligned_cols=129 Identities=33% Similarity=0.597 Sum_probs=115.0
Q ss_pred EEeCeeEEEEeCCCCChhhHHHHHHHHhccccCCceEEEeecCcEEEecCCCCCCC---------------------CCC
Q 007574 354 HTTHGDLNIELHCDITPRSCENFITLCERGYYNGVAFHRSIRNFMIQGGDPTGTGR---------------------GGE 412 (597)
Q Consensus 354 ~T~~G~I~IEL~~d~aP~tv~NFl~L~~~g~Y~gt~fhRvi~~f~IQgGdptg~g~---------------------gg~ 412 (597)
.|+.|+|+|+||++.||+||+||+.||+.+||+++.||||+++||||||||.+++. ++.
T Consensus 3 ~T~~G~i~ieL~~~~aP~t~~NF~~L~~~g~Ydg~~FhRVi~~fviQgGdp~~~~~~~~~~~~~~~~~~p~e~~~~~~~~ 82 (176)
T cd01924 3 ATDNGTITIVLDGYNAPVTAGNFVDLVERGFYDGMEFHRVEGGFVVQTGDPQGKNPGFPDPETGKSRTIPLEIKPEGQKQ 82 (176)
T ss_pred ccccceEEEEEcCCCCCHHHHHHHHHHHhCCcCCCEEEEecCCcEEEecCCCCCCCCcccccccccccccceecccCCCC
Confidence 48999999999999999999999999999999999999999999999999986542 245
Q ss_pred ccCCCCCC----CcccccccCCCccEEEEecCC--CCCCCcceEEecc-------CCCCCCCCCcEEEEEEcChHHHHHH
Q 007574 413 SIWGKPFK----DEVNSKLLHSGRGVVSMANSG--PHTNGSQFFILYK-------SATHLNYKHTVFGGVVGGLTTLAAM 479 (597)
Q Consensus 413 si~g~~f~----dE~~~~l~h~~rG~lsman~g--~ntngSqFFItl~-------~~p~LD~k~tVFGrVv~G~dvL~~I 479 (597)
++|+..+. ++.+..+.|+.+|+||||+.+ +|+++|||||++. +++|||++|+|||+|++|||||++|
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~G~laMa~~~~~~ns~~SQFfI~~~~~~~~~~~~~~Ldg~ytVFG~VveG~dvl~~I 162 (176)
T cd01924 83 PVYGKTLEEAGRYDEQPVLPFNAFGAIAMARTEFDPNSASSQFFFLLKDNELTPSRNNVLDGRYAVFGYVTDGLDILREL 162 (176)
T ss_pred CccCcccccccccccccccccCCCCeEEEccCCCCCCCccceEEEEeccccccCCCCCccCCCceEEEEEecCHHHHHhh
Confidence 67777653 333566788899999999987 7999999999998 8999999999999999999999999
Q ss_pred hcC
Q 007574 480 EKV 482 (597)
Q Consensus 480 e~~ 482 (597)
+..
T Consensus 163 ~~g 165 (176)
T cd01924 163 KVG 165 (176)
T ss_pred cCC
Confidence 754
No 28
>PF04641 Rtf2: Rtf2 RING-finger
Probab=100.00 E-value=1.8e-33 Score=287.89 Aligned_cols=145 Identities=31% Similarity=0.502 Sum_probs=125.6
Q ss_pred CCCCCCCCCccccCCCCCCCCcee-cCCCCeeeHHhHHHHHHhcCC---CCCC-CCCCCCCCcccccccccc--------
Q 007574 31 RTPFKRLPFYCCALTFTPFEDPVC-TADGSVFELMSITPYIRKYGK---HPVT-GTPLKLEDLIPLTFHKNA-------- 97 (597)
Q Consensus 31 ~~~~~~lpf~~C~LSl~pl~~PV~-t~~G~ly~ke~Il~~L~k~~~---~Pvt-g~~l~lkdLi~l~f~kn~-------- 97 (597)
...++.++|+||+||++||+.||| |..|+|||+++||+||+.++. .|.+ .|+.+|+||++|+|+.|+
T Consensus 26 ~~~~~~~~w~~CaLS~~pL~~PiV~d~~G~LynKeaile~Ll~~~~~~~~~~~~~hI~~LKDl~~l~~~~n~~~~~~~~~ 105 (260)
T PF04641_consen 26 KEEEREARWTHCALSQQPLEDPIVSDRLGRLYNKEAILEFLLDKKKNKDLPKTFSHIKSLKDLVELKFTKNPSYKEEDKS 105 (260)
T ss_pred HhHHhhCCcCcccCcCCccCCCeeeCCCCeeEcHHHHHHHHHhcCcCCCCccccccccCccceeeEEeEecCcccccccc
Confidence 456678999999999999999985 778999999999999998864 3444 577899999999999884
Q ss_pred -----CcccccccccccccCceeEEEEecCcceehHHHHHHHhhcccCccccCCCCCCCCCCeeEecCCCCcchhccchh
Q 007574 98 -----EGEYHCPVLNKVFTEFTHIVAVKTTGNVFCFEAIKELNIKTKNWKELLTDEPFTKEDLITIQNPNALDTKVTLEF 172 (597)
Q Consensus 98 -----~~~~~CPvt~k~ft~~t~~v~ik~~G~V~s~eai~~l~~k~k~~~~lv~~~~f~~~DII~Lqdp~~~~~~~~~~f 172 (597)
.+.|+||||+++|+++++|||||+||||||++||+++. +.+.||+|+++|++.|||+||+|.+........+
T Consensus 106 ~~~~~~~~~~CPvt~~~~~~~~~fv~l~~cG~V~s~~alke~k---~~~~Cp~c~~~f~~~DiI~Lnp~~ee~~~l~~~~ 182 (260)
T PF04641_consen 106 SGDNSEGRFICPVTGKEFNGKHKFVYLRPCGCVFSEKALKELK---KSKKCPVCGKPFTEEDIIPLNPPEEELEKLRERM 182 (260)
T ss_pred ccccCCceeECCCCCcccCCceeEEEEcCCCCEeeHHHHHhhc---ccccccccCCccccCCEEEecCCccHHHHHHHHH
Confidence 68899999999999999999999999999999999983 4678999999999999999999988444445556
Q ss_pred hhhhcC
Q 007574 173 DHVKKG 178 (597)
Q Consensus 173 ~h~k~~ 178 (597)
.+++..
T Consensus 183 ~~~~~~ 188 (260)
T PF04641_consen 183 EERKAK 188 (260)
T ss_pred HHHHhh
Confidence 566555
No 29
>KOG3039 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.98 E-value=8.3e-33 Score=270.74 Aligned_cols=154 Identities=32% Similarity=0.553 Sum_probs=137.4
Q ss_pred CCCCCCCeeeeHHHHhhh-----cCCccccccCCCCCCCCCccccCCCCCCCCceecCCCCeeeHHhHHHHHHhcC----
Q 007574 4 KQHSKDRMFITKTEWATE-----WGGAKSKEVRTPFKRLPFYCCALTFTPFEDPVCTADGSVFELMSITPYIRKYG---- 74 (597)
Q Consensus 4 ~~~~~dk~yiT~~E~~~~-----~gg~k~~~~~~~~~~lpf~~C~LSl~pl~~PV~t~~G~ly~ke~Il~~L~k~~---- 74 (597)
+++.++-.|+||+|..+. ||...+|+++++.+ ||+||+|||||+.+||||++|||||+|+||+||..++
T Consensus 5 ~kN~ta~avyTY~EkkkdaaasGYGTq~~RLgrDsiK--~FdcCsLtLqPc~dPvit~~GylfdrEaILe~ilaqKke~a 82 (303)
T KOG3039|consen 5 GKNCTAGAVYTYHEKKKDAAASGYGTQRERLGRDSIK--PFDCCSLTLQPCRDPVITPDGYLFDREAILEYILAQKKEIA 82 (303)
T ss_pred ccCCccceeEeehhhcchhhhcCcchhhhhhcccccC--CcceeeeecccccCCccCCCCeeeeHHHHHHHHHHHHHHHH
Confidence 355699999999999983 99999999999986 8999999999999999999999999999999991110
Q ss_pred --------------------------------------------------------------------------------
Q 007574 75 -------------------------------------------------------------------------------- 74 (597)
Q Consensus 75 -------------------------------------------------------------------------------- 74 (597)
T Consensus 83 rrlkayekqrr~eed~e~qra~~q~~~~~~eF~~~e~~~~s~al~r~~~~~~ae~~a~~~~~~~~~~sn~~~d~~k~lps 162 (303)
T KOG3039|consen 83 RRLKAYEKQRRAEEDKEEQRAMSQKARRLDEFDQQESTPESSALPRNPDTNSAEDAASFHGANSVSTSNMEEDKLKTLPS 162 (303)
T ss_pred HHHHHHHHHHHhhhhHHHHHHHhhhHHHHHHHHhhccccccccccCCCCcchhhhccCccccCCccccCccccccccccc
Confidence
Q ss_pred ----------------------CCCCCCCCCCCCCcccccccccc-----------CcccccccccccccCceeEEEEec
Q 007574 75 ----------------------KHPVTGTPLKLEDLIPLTFHKNA-----------EGEYHCPVLNKVFTEFTHIVAVKT 121 (597)
Q Consensus 75 ----------------------~~Pvtg~~l~lkdLi~l~f~kn~-----------~~~~~CPvt~k~ft~~t~~v~ik~ 121 (597)
.+|++|+||.+|||++++|+.-. ...|+||||..+++|.+.++++++
T Consensus 163 FWlPs~tP~A~atklekP~~~v~CP~s~kplklkdL~~VkFT~l~s~~~et~l~a~s~ryiCpvtrd~LtNt~~ca~Lr~ 242 (303)
T KOG3039|consen 163 FWLPSLTPTAAATKLEKPSTTVVCPVSGKPLKLKDLFAVKFTPLNSEETETKLIAASKRYICPVTRDTLTNTTPCAVLRP 242 (303)
T ss_pred eecCccCchhhhhcccCCCceeeccCCCCccchhhcceeeeeecCCchhhhhhhhhccceecccchhhhcCccceEEecc
Confidence 11999999999999999997543 256999999999999999999999
Q ss_pred CcceehHHHHHHHhhcccCccccCCCCCCCCCCeeEecCC
Q 007574 122 TGNVFCFEAIKELNIKTKNWKELLTDEPFTKEDLITIQNP 161 (597)
Q Consensus 122 ~G~V~s~eai~~l~~k~k~~~~lv~~~~f~~~DII~Lqdp 161 (597)
||+||+++|+++|..++ +.|||||+|+++.|||.||-.
T Consensus 243 sg~Vv~~ecvEklir~D--~v~pv~d~plkdrdiI~LqrG 280 (303)
T KOG3039|consen 243 SGHVVTKECVEKLIRKD--MVDPVTDKPLKDRDIIGLQRG 280 (303)
T ss_pred CCcEeeHHHHHHhcccc--ccccCCCCcCcccceEeeecc
Confidence 99999999999997544 699999999999999999954
No 30
>KOG0865 consensus Cyclophilin type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=2e-31 Score=253.85 Aligned_cols=146 Identities=45% Similarity=0.774 Sum_probs=135.1
Q ss_pred EeCeeEEEEeCCCCChhhHHHHHHHHh--ccc-cCCceEEE---eecCcEEEecCCC-CCCCCCCccCCCCCCCcccccc
Q 007574 355 TTHGDLNIELHCDITPRSCENFITLCE--RGY-YNGVAFHR---SIRNFMIQGGDPT-GTGRGGESIWGKPFKDEVNSKL 427 (597)
Q Consensus 355 T~~G~I~IEL~~d~aP~tv~NFl~L~~--~g~-Y~gt~fhR---vi~~f~IQgGdpt-g~g~gg~si~g~~f~dE~~~~l 427 (597)
.++|++.++||.|..|+|++||..||. .++ |.++.||| .+++||+||||.+ ++|+||.|||+..|+|| ++.|
T Consensus 15 ~p~gr~~~~l~ad~~Pktaenf~al~tgekg~~yk~s~fhr~~~~~~~fm~qggDft~hngtggkSiy~ekF~De-nFil 93 (167)
T KOG0865|consen 15 EPLGRIVFELFADKIPKTAENFRALCTGEKGFGYKGSCFHRLIPIIPGFMCQGGDFTCHNGTGGKSIYGEKFDDE-NFIL 93 (167)
T ss_pred ccccccceecccccCcchHhhhhhcccCCCccccccchhhhccccccceeeccCcccccCCccceEecccccCCc-CcEE
Confidence 678999999999999999999999995 333 99999999 3347999999998 88999999999999999 8999
Q ss_pred cCCCccEEEEecCCCCCCCcceEEeccCCCCCCCCCcEEEEEEcChHHHHHHhcCCCCCCCCCccccEEeEEEEE
Q 007574 428 LHSGRGVVSMANSGPHTNGSQFFILYKSATHLNYKHTVFGGVVGGLTTLAAMEKVPVDENDRPLEEIKITGVTVF 502 (597)
Q Consensus 428 ~h~~rG~lsman~g~ntngSqFFItl~~~p~LD~k~tVFGrVv~G~dvL~~Ie~~~td~~~rP~~~I~I~~~~Vl 502 (597)
+|.++|+|||||.|||+|||||||++....|||++|+|||+|.+||+++++|+.... .++++..+|.|.+|+.+
T Consensus 94 khtgpGiLSmaNagpntngsqffictaktewLdgkhVVfGkv~eGm~iv~a~e~~gs-~~gk~~~~i~i~dcg~l 167 (167)
T KOG0865|consen 94 KHTGPGILSMANAGPNTNGSQFFICTAKTEWLDGKHVVFGKVKEGMDIVEAMERFGS-RNGKTSKKITIADCGQL 167 (167)
T ss_pred ecCCCCeeehhhcCCCccccEEEEEccccccccCceeEcCceEcccchhhhhhccCC-cCCcccccEEEecCCcC
Confidence 999999999999999999999999999999999999999999999999999999654 48899999999999854
No 31
>KOG3113 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.86 E-value=3.6e-22 Score=196.96 Aligned_cols=118 Identities=22% Similarity=0.427 Sum_probs=105.5
Q ss_pred CCccccCCCCCCCCcee-cCCCCeeeHHhHHHHHHhcCCCCCC-CCCCCCCCcccccccccc-----C---------ccc
Q 007574 38 PFYCCALTFTPFEDPVC-TADGSVFELMSITPYIRKYGKHPVT-GTPLKLEDLIPLTFHKNA-----E---------GEY 101 (597)
Q Consensus 38 pf~~C~LSl~pl~~PV~-t~~G~ly~ke~Il~~L~k~~~~Pvt-g~~l~lkdLi~l~f~kn~-----~---------~~~ 101 (597)
.|.+|+||.+||..||+ |..|+||||++|+++|.....-|-+ .|+.++||++.|+.+.|+ . ..|
T Consensus 33 qw~~CaLtqepL~~Piv~c~lGrLYNKe~vi~~LL~Ks~~pksaShIKslKDvveLklt~n~~~~gD~~~~~~D~~~a~f 112 (293)
T KOG3113|consen 33 QWRNCALTQEPLRRPIVACGLGRLYNKESVIEFLLDKSSLPKSASHIKSLKDVVELKLTLNPAFEGDKGNKHDDTQRARF 112 (293)
T ss_pred HHhhcccccCccccceeeehhhccccHHHHHHHHHhcccCCcchhhhcchhhHhheecccCcccccccCcccccccccee
Confidence 49999999999999998 6679999999999999987665655 689999999999998873 1 369
Q ss_pred ccccccccccCceeEEEEecCcceehHHHHHHHhhcccCccccCCCCCCCCCCeeEec
Q 007574 102 HCPVLNKVFTEFTHIVAVKTTGNVFCFEAIKELNIKTKNWKELLTDEPFTKEDLITIQ 159 (597)
Q Consensus 102 ~CPvt~k~ft~~t~~v~ik~~G~V~s~eai~~l~~k~k~~~~lv~~~~f~~~DII~Lq 159 (597)
+|||++.+|++..+|++||.|||||++.|++|+ +.. .|++|+.+|.++|+|+|.
T Consensus 113 iCPvtgleMng~~~F~~l~~CGcV~SerAlKei--kas--~C~~C~a~y~~~dvIvlN 166 (293)
T KOG3113|consen 113 ICPVTGLEMNGKYRFCALRCCGCVFSERALKEI--KAS--VCHVCGAAYQEDDVIVLN 166 (293)
T ss_pred ecccccceecceEEEEEEeccceeccHHHHHHh--hhc--cccccCCcccccCeEeeC
Confidence 999999999999999999999999999999995 343 799999999999999775
No 32
>smart00504 Ubox Modified RING finger domain. Modified RING finger domain, without the full complement of Zn2+-binding ligands. Probable involvement in E2-dependent ubiquitination.
Probab=99.15 E-value=2.7e-11 Score=97.34 Aligned_cols=62 Identities=35% Similarity=0.636 Sum_probs=57.3
Q ss_pred ccccCCCCCCCCceecCCCCeeeHHhHHHHHHhcCCCCCCCCCCCCCCccccccccccCccc
Q 007574 40 YCCALTFTPFEDPVCTADGSVFELMSITPYIRKYGKHPVTGTPLKLEDLIPLTFHKNAEGEY 101 (597)
Q Consensus 40 ~~C~LSl~pl~~PV~t~~G~ly~ke~Il~~L~k~~~~Pvtg~~l~lkdLi~l~f~kn~~~~~ 101 (597)
..|+||+++|++||+++.||+|++++|.+||++++++|++|++++.+||+++...++...+|
T Consensus 2 ~~Cpi~~~~~~~Pv~~~~G~v~~~~~i~~~~~~~~~cP~~~~~~~~~~l~~~~~l~~~i~~~ 63 (63)
T smart00504 2 FLCPISLEVMKDPVILPSGQTYERRAIEKWLLSHGTDPVTGQPLTHEDLIPNLALKSAIQEW 63 (63)
T ss_pred cCCcCCCCcCCCCEECCCCCEEeHHHHHHHHHHCCCCCCCcCCCChhhceeCHHHHHHHHhC
Confidence 57999999999999999999999999999999999999999999999999999888765544
No 33
>PF04564 U-box: U-box domain; InterPro: IPR003613 Quality control of intracellular proteins is essential for cellular homeostasis. Molecular chaperones recognise and contribute to the refolding of misfolded or unfolded proteins, whereas the ubiquitin-proteasome system mediates the degradation of such abnormal proteins. Ubiquitin-protein ligases (E3s) determine the substrate specificity for ubiquitylation and have been classified into HECT and RING-finger families. More recently, however, U-box proteins, which contain a domain (the U box) of about 70 amino acids that is conserved from yeast to humans, have been identified as a new type of E3 []. Members of the U-box family of proteins constitute a class of ubiquitin-protein ligases (E3s) distinct from the HECT-type and RING finger-containing E3 families []. Using yeast two-hybrid technology, all mammalian U-box proteins have been reported to interact with molecular chaperones or co-chaperones, including Hsp90, Hsp70, DnaJc7, EKN1, CRN, and VCP. This suggests that the function of U box-type E3s is to mediate the degradation of unfolded or misfolded proteins in conjunction with molecular chaperones as receptors that recognise such abnormal proteins [, ]. Unlike the RING finger domain, IPR001841 from INTERPRO, that is stabilised by Zn2+ ions coordinated by the cysteines and a histidine, the U-box scaffold is probably stabilised by a system of salt-bridges and hydrogen bonds. The charged and polar residues that participate in this network of bonds are more strongly conserved in the U-box proteins than in classic RING fingers, which supports their role in maintaining the stability of the U box. Thus, the U box appears to have evolved from a RING finger domain by appropriation of a new set of residues required to stabilise its structure, concomitant with the loss of the original, metal-chelating residues [].; GO: 0004842 ubiquitin-protein ligase activity, 0016567 protein ubiquitination, 0000151 ubiquitin ligase complex; PDB: 1T1H_A 2C2L_D 2C2V_V 1WGM_A 2KR4_A 3L1Z_B 3L1X_A 2KRE_A 3M63_A 2QIZ_A ....
Probab=99.13 E-value=1.1e-11 Score=103.58 Aligned_cols=65 Identities=31% Similarity=0.476 Sum_probs=54.2
Q ss_pred CCccccCCCCCCCCceecCCCCeeeHHhHHHHHHh-cCCCCCCCCCCCCCCccccccccccCcccc
Q 007574 38 PFYCCALTFTPFEDPVCTADGSVFELMSITPYIRK-YGKHPVTGTPLKLEDLIPLTFHKNAEGEYH 102 (597)
Q Consensus 38 pf~~C~LSl~pl~~PV~t~~G~ly~ke~Il~~L~k-~~~~Pvtg~~l~lkdLi~l~f~kn~~~~~~ 102 (597)
+.++|+||+..|.+||+.++|++||+.+|+.||.. +..+|+|+++++..+|+++.-.++...+|+
T Consensus 3 ~~f~CpIt~~lM~dPVi~~~G~tyer~~I~~~l~~~~~~~P~t~~~l~~~~l~pn~~Lk~~I~~~~ 68 (73)
T PF04564_consen 3 DEFLCPITGELMRDPVILPSGHTYERSAIERWLEQNGGTDPFTRQPLSESDLIPNRALKSAIEEWC 68 (73)
T ss_dssp GGGB-TTTSSB-SSEEEETTSEEEEHHHHHHHHCTTSSB-TTT-SB-SGGGSEE-HHHHHHHHHHH
T ss_pred cccCCcCcCcHhhCceeCCcCCEEcHHHHHHHHHcCCCCCCCCCCcCCcccceECHHHHHHHHHHH
Confidence 46799999999999999999999999999999999 788999999999999999998888766664
No 34
>smart00504 Ubox Modified RING finger domain. Modified RING finger domain, without the full complement of Zn2+-binding ligands. Probable involvement in E2-dependent ubiquitination.
Probab=98.24 E-value=1.2e-06 Score=70.21 Aligned_cols=54 Identities=26% Similarity=0.463 Sum_probs=46.6
Q ss_pred ccccccccccccCceeEEEEecCcceehHHHHHHHhhcccCccccCCCCCCCCCCeeEec
Q 007574 100 EYHCPVLNKVFTEFTHIVAVKTTGNVFCFEAIKELNIKTKNWKELLTDEPFTKEDLITIQ 159 (597)
Q Consensus 100 ~~~CPvt~k~ft~~t~~v~ik~~G~V~s~eai~~l~~k~k~~~~lv~~~~f~~~DII~Lq 159 (597)
+|+||||+..|.+- ++.+|||||+++||.++... +..||+|+++++.+|+|++.
T Consensus 1 ~~~Cpi~~~~~~~P----v~~~~G~v~~~~~i~~~~~~--~~~cP~~~~~~~~~~l~~~~ 54 (63)
T smart00504 1 EFLCPISLEVMKDP----VILPSGQTYERRAIEKWLLS--HGTDPVTGQPLTHEDLIPNL 54 (63)
T ss_pred CcCCcCCCCcCCCC----EECCCCCEEeHHHHHHHHHH--CCCCCCCcCCCChhhceeCH
Confidence 48999999999985 35699999999999998655 46899999999999999853
No 35
>PF11789 zf-Nse: Zinc-finger of the MIZ type in Nse subunit; PDB: 2YU4_A 3HTK_C.
Probab=98.13 E-value=1.1e-06 Score=70.13 Aligned_cols=41 Identities=44% Similarity=0.864 Sum_probs=28.2
Q ss_pred ccccCCCCCCCCceecCC-CCeeeHHhHHHHHHhcC--CCCCCC
Q 007574 40 YCCALTFTPFEDPVCTAD-GSVFELMSITPYIRKYG--KHPVTG 80 (597)
Q Consensus 40 ~~C~LSl~pl~~PV~t~~-G~ly~ke~Il~~L~k~~--~~Pvtg 80 (597)
..||||++||++||.+.. ||+|++++|++||...+ .+|++|
T Consensus 12 ~~CPiT~~~~~~PV~s~~C~H~fek~aI~~~i~~~~~~~CPv~G 55 (57)
T PF11789_consen 12 LKCPITLQPFEDPVKSKKCGHTFEKEAILQYIQRNGSKRCPVAG 55 (57)
T ss_dssp SB-TTTSSB-SSEEEESSS--EEEHHHHHHHCTTTS-EE-SCCC
T ss_pred cCCCCcCChhhCCcCcCCCCCeecHHHHHHHHHhcCCCCCCCCC
Confidence 469999999999999755 99999999999993222 255554
No 36
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=98.09 E-value=1.4e-06 Score=93.05 Aligned_cols=53 Identities=38% Similarity=0.669 Sum_probs=50.8
Q ss_pred cccCCCCCCCCceecCC-CCeeeHHhHHHHHHhcCCCCCCCCCCCCCCcccccc
Q 007574 41 CCALTFTPFEDPVCTAD-GSVFELMSITPYIRKYGKHPVTGTPLKLEDLIPLTF 93 (597)
Q Consensus 41 ~C~LSl~pl~~PV~t~~-G~ly~ke~Il~~L~k~~~~Pvtg~~l~lkdLi~l~f 93 (597)
.|+||.+.-++||+++. |++|+|.-|.+||...|+||+|++||++.|||+++-
T Consensus 2 ~CaISgEvP~~PVvS~~Sg~vfEkrLIEqyI~e~G~DPIt~~pLs~eelV~Ik~ 55 (506)
T KOG0289|consen 2 VCAISGEVPEEPVVSPVSGHVFEKRLIEQYIAETGKDPITNEPLSIEELVEIKV 55 (506)
T ss_pred eecccCCCCCCccccccccchHHHHHHHHHHHHcCCCCCCCCcCCHHHeeeccc
Confidence 59999999999999885 999999999999999999999999999999999985
No 37
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=97.67 E-value=5.9e-05 Score=81.37 Aligned_cols=159 Identities=18% Similarity=0.231 Sum_probs=131.5
Q ss_pred cCCCcceEEEEEEeCe----eEEEEeCCCCChhhHHHHHHHHhccccCCceEEEeecCcEEEecCCC--CCCCCCCccCC
Q 007574 343 KNPKKKGYVQLHTTHG----DLNIELHCDITPRSCENFITLCERGYYNGVAFHRSIRNFMIQGGDPT--GTGRGGESIWG 416 (597)
Q Consensus 343 ~~~k~~~~V~l~T~~G----~I~IEL~~d~aP~tv~NFl~L~~~g~Y~gt~fhRvi~~f~IQgGdpt--g~g~gg~si~g 416 (597)
+.+-..+.+.+.|..| -|.|+|+.+-.|.-++-|..+|..+|+++..|.||+..+++|.||.. .+..|-.-+|.
T Consensus 93 KL~~lPg~a~wv~skGd~~s~IAVs~~~sg~i~VvD~~~d~~q~~~fkklH~sPV~~i~y~qa~Ds~vSiD~~gmVEyWs 172 (558)
T KOG0882|consen 93 KLVDLPGFAEWVTSKGDKISLIAVSLFKSGKIFVVDGFGDFCQDGYFKKLHFSPVKKIRYNQAGDSAVSIDISGMVEYWS 172 (558)
T ss_pred ccccCCCceEEecCCCCeeeeEEeecccCCCcEEECCcCCcCccceecccccCceEEEEeeccccceeeccccceeEeec
Confidence 4455678899999999 89999999999999999999999999999999999999999999965 34444455664
Q ss_pred CC----C-CCcccccccCCCccEEEEecCCCCCCCcceEEeccCCCCCCCCCcEEEEEEcChHHHHHHhcCCCCCCCCCc
Q 007574 417 KP----F-KDEVNSKLLHSGRGVVSMANSGPHTNGSQFFILYKSATHLNYKHTVFGGVVGGLTTLAAMEKVPVDENDRPL 491 (597)
Q Consensus 417 ~~----f-~dE~~~~l~h~~rG~lsman~g~ntngSqFFItl~~~p~LD~k~tVFGrVv~G~dvL~~Ie~~~td~~~rP~ 491 (597)
.. | +++.+..++|. --++..........+-+|++.-...+.|+.+..|||++..|-+++..|+.+.++....|.
T Consensus 173 ~e~~~qfPr~~l~~~~K~e-TdLy~f~K~Kt~pts~Efsp~g~qistl~~DrkVR~F~~KtGklvqeiDE~~t~~~~q~k 251 (558)
T KOG0882|consen 173 AEGPFQFPRTNLNFELKHE-TDLYGFPKAKTEPTSFEFSPDGAQISTLNPDRKVRGFVFKTGKLVQEIDEVLTDAQYQPK 251 (558)
T ss_pred CCCcccCcccccccccccc-chhhcccccccCccceEEccccCcccccCcccEEEEEEeccchhhhhhhccchhhhhccc
Confidence 33 3 34457778886 556666655445557789999888889999999999999999999999999999888999
Q ss_pred cccEEeEEEEE
Q 007574 492 EEIKITGVTVF 502 (597)
Q Consensus 492 ~~I~I~~~~Vl 502 (597)
.++.|.++...
T Consensus 252 s~y~l~~Velg 262 (558)
T KOG0882|consen 252 SPYGLMHVELG 262 (558)
T ss_pred cccccceeehh
Confidence 99998888654
No 38
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=97.51 E-value=1.9e-05 Score=79.58 Aligned_cols=63 Identities=27% Similarity=0.433 Sum_probs=57.3
Q ss_pred CCCCccccCCCCCCCCceecCCCCeeeHHhHHHHHHhcCC-CCCCCCCCCCCCccccccccccC
Q 007574 36 RLPFYCCALTFTPFEDPVCTADGSVFELMSITPYIRKYGK-HPVTGTPLKLEDLIPLTFHKNAE 98 (597)
Q Consensus 36 ~lpf~~C~LSl~pl~~PV~t~~G~ly~ke~Il~~L~k~~~-~Pvtg~~l~lkdLi~l~f~kn~~ 98 (597)
.+.|-||.|+++.|++||++|.|..|++..|+++|.+-|. +|+|+.+|+--+|||+--.+..+
T Consensus 208 vpd~lcgkIt~el~~~pvi~psgIty~ra~I~Ehl~rvghfdpvtr~~Lte~q~ipN~alkevI 271 (284)
T KOG4642|consen 208 VPDYLCGKITLELMREPVITPSGITYDRADIEEHLQRVGHFDPVTRWPLTEYQLIPNLALKEVI 271 (284)
T ss_pred ccchhhhhhhHHhhcCCccCccccchhHHHHHHHHHHhccCCchhcccCCHHhhccchHHHHHH
Confidence 4679999999999999999999999999999999999886 99999999999999987766543
No 39
>KOG0320 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.50 E-value=6.5e-05 Score=72.29 Aligned_cols=57 Identities=28% Similarity=0.433 Sum_probs=47.2
Q ss_pred CcccccccccccccCceeEEEEecCcceehHHHHHHHhhcccCccccCCCCCCCCCCeeEe
Q 007574 98 EGEYHCPVLNKVFTEFTHIVAVKTTGNVFCFEAIKELNIKTKNWKELLTDEPFTKEDLITI 158 (597)
Q Consensus 98 ~~~~~CPvt~k~ft~~t~~v~ik~~G~V~s~eai~~l~~k~k~~~~lv~~~~f~~~DII~L 158 (597)
++-|-||||...++.... +--.||||||..||+.+..+. .+||+|.++.+.++++.|
T Consensus 129 ~~~~~CPiCl~~~sek~~--vsTkCGHvFC~~Cik~alk~~--~~CP~C~kkIt~k~~~rI 185 (187)
T KOG0320|consen 129 EGTYKCPICLDSVSEKVP--VSTKCGHVFCSQCIKDALKNT--NKCPTCRKKITHKQFHRI 185 (187)
T ss_pred ccccCCCceecchhhccc--cccccchhHHHHHHHHHHHhC--CCCCCcccccchhhheec
Confidence 466999999998886543 336799999999999987655 489999999999998865
No 40
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=97.47 E-value=2.6e-05 Score=89.03 Aligned_cols=55 Identities=24% Similarity=0.398 Sum_probs=46.3
Q ss_pred cccccccccccccCceeEEEEecCcceehHHHHHHHhhcccCccccCCCCCCCCCCeeEe
Q 007574 99 GEYHCPVLNKVFTEFTHIVAVKTTGNVFCFEAIKELNIKTKNWKELLTDEPFTKEDLITI 158 (597)
Q Consensus 99 ~~~~CPvt~k~ft~~t~~v~ik~~G~V~s~eai~~l~~k~k~~~~lv~~~~f~~~DII~L 158 (597)
+-..||+|..-+ +=++|..||||||++||+.. +....-+||.|+.+|...||++|
T Consensus 642 ~~LkCs~Cn~R~----Kd~vI~kC~H~FC~~Cvq~r-~etRqRKCP~Cn~aFganDv~~I 696 (698)
T KOG0978|consen 642 ELLKCSVCNTRW----KDAVITKCGHVFCEECVQTR-YETRQRKCPKCNAAFGANDVHRI 696 (698)
T ss_pred hceeCCCccCch----hhHHHHhcchHHHHHHHHHH-HHHhcCCCCCCCCCCCccccccc
Confidence 346799998444 34679999999999999987 55667899999999999999986
No 41
>PF04564 U-box: U-box domain; InterPro: IPR003613 Quality control of intracellular proteins is essential for cellular homeostasis. Molecular chaperones recognise and contribute to the refolding of misfolded or unfolded proteins, whereas the ubiquitin-proteasome system mediates the degradation of such abnormal proteins. Ubiquitin-protein ligases (E3s) determine the substrate specificity for ubiquitylation and have been classified into HECT and RING-finger families. More recently, however, U-box proteins, which contain a domain (the U box) of about 70 amino acids that is conserved from yeast to humans, have been identified as a new type of E3 []. Members of the U-box family of proteins constitute a class of ubiquitin-protein ligases (E3s) distinct from the HECT-type and RING finger-containing E3 families []. Using yeast two-hybrid technology, all mammalian U-box proteins have been reported to interact with molecular chaperones or co-chaperones, including Hsp90, Hsp70, DnaJc7, EKN1, CRN, and VCP. This suggests that the function of U box-type E3s is to mediate the degradation of unfolded or misfolded proteins in conjunction with molecular chaperones as receptors that recognise such abnormal proteins [, ]. Unlike the RING finger domain, IPR001841 from INTERPRO, that is stabilised by Zn2+ ions coordinated by the cysteines and a histidine, the U-box scaffold is probably stabilised by a system of salt-bridges and hydrogen bonds. The charged and polar residues that participate in this network of bonds are more strongly conserved in the U-box proteins than in classic RING fingers, which supports their role in maintaining the stability of the U box. Thus, the U box appears to have evolved from a RING finger domain by appropriation of a new set of residues required to stabilise its structure, concomitant with the loss of the original, metal-chelating residues [].; GO: 0004842 ubiquitin-protein ligase activity, 0016567 protein ubiquitination, 0000151 ubiquitin ligase complex; PDB: 1T1H_A 2C2L_D 2C2V_V 1WGM_A 2KR4_A 3L1Z_B 3L1X_A 2KRE_A 3M63_A 2QIZ_A ....
Probab=97.36 E-value=0.00023 Score=59.39 Aligned_cols=55 Identities=20% Similarity=0.427 Sum_probs=41.8
Q ss_pred cccccccccccccCceeEEEEecCcceehHHHHHHHhhcccCccccCCCCCCCCCCeeEe
Q 007574 99 GEYHCPVLNKVFTEFTHIVAVKTTGNVFCFEAIKELNIKTKNWKELLTDEPFTKEDLITI 158 (597)
Q Consensus 99 ~~~~CPvt~k~ft~~t~~v~ik~~G~V~s~eai~~l~~k~k~~~~lv~~~~f~~~DII~L 158 (597)
.+|+||+|+..|.+- ++-++|++|...+|++.... ....||+|+++++.+|+|+.
T Consensus 3 ~~f~CpIt~~lM~dP----Vi~~~G~tyer~~I~~~l~~-~~~~~P~t~~~l~~~~l~pn 57 (73)
T PF04564_consen 3 DEFLCPITGELMRDP----VILPSGHTYERSAIERWLEQ-NGGTDPFTRQPLSESDLIPN 57 (73)
T ss_dssp GGGB-TTTSSB-SSE----EEETTSEEEEHHHHHHHHCT-TSSB-TTT-SB-SGGGSEE-
T ss_pred cccCCcCcCcHhhCc----eeCCcCCEEcHHHHHHHHHc-CCCCCCCCCCcCCcccceEC
Confidence 469999999999987 35699999999999997544 45689999999999999974
No 42
>KOG0826 consensus Predicted E3 ubiquitin ligase involved in peroxisome organization [Posttranslational modification, protein turnover, chaperones]
Probab=97.22 E-value=0.00012 Score=76.42 Aligned_cols=54 Identities=33% Similarity=0.576 Sum_probs=48.8
Q ss_pred CccccCCCCCCCCc-eecCCCCeeeHHhHHHHHHhcCCCCCCCCCCCCCCccccc
Q 007574 39 FYCCALTFTPFEDP-VCTADGSVFELMSITPYIRKYGKHPVTGTPLKLEDLIPLT 92 (597)
Q Consensus 39 f~~C~LSl~pl~~P-V~t~~G~ly~ke~Il~~L~k~~~~Pvtg~~l~lkdLi~l~ 92 (597)
=..||+|++--.+| ||.-.|++||..||..|+.+++.+||||-|++..+|+++-
T Consensus 300 ~~~CpvClk~r~Nptvl~vSGyVfCY~Ci~~Yv~~~~~CPVT~~p~~v~~l~rl~ 354 (357)
T KOG0826|consen 300 REVCPVCLKKRQNPTVLEVSGYVFCYPCIFSYVVNYGHCPVTGYPASVDHLIRLF 354 (357)
T ss_pred cccChhHHhccCCCceEEecceEEeHHHHHHHHHhcCCCCccCCcchHHHHHHHh
Confidence 45699999999999 4567799999999999999999999999999999998763
No 43
>TIGR00570 cdk7 CDK-activating kinase assembly factor MAT1. All proteins in this family for which functions are known are cyclin dependent protein kinases that are components of TFIIH, a complex that is involved in nucleotide excision repair and transcription initiation. Also known as MAT1 (menage a trois 1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=97.14 E-value=0.00029 Score=73.86 Aligned_cols=56 Identities=14% Similarity=0.258 Sum_probs=44.8
Q ss_pred cccccccccc--cccCceeEEEEecCcceehHHHHHHHhhcccCccccCCCCCCCCCCee
Q 007574 99 GEYHCPVLNK--VFTEFTHIVAVKTTGNVFCFEAIKELNIKTKNWKELLTDEPFTKEDLI 156 (597)
Q Consensus 99 ~~~~CPvt~k--~ft~~t~~v~ik~~G~V~s~eai~~l~~k~k~~~~lv~~~~f~~~DII 156 (597)
.++.||+|.. .++...++.+. +|||+||..||+.+-.. ....||+|+.++.+.++-
T Consensus 2 d~~~CP~Ck~~~y~np~~kl~i~-~CGH~~C~sCv~~l~~~-~~~~CP~C~~~lrk~~fr 59 (309)
T TIGR00570 2 DDQGCPRCKTTKYRNPSLKLMVN-VCGHTLCESCVDLLFVR-GSGSCPECDTPLRKNNFR 59 (309)
T ss_pred CCCCCCcCCCCCccCcccccccC-CCCCcccHHHHHHHhcC-CCCCCCCCCCccchhhcc
Confidence 3589999998 57777676655 99999999999997433 345899999999988743
No 44
>PLN03208 E3 ubiquitin-protein ligase RMA2; Provisional
Probab=97.12 E-value=0.00055 Score=67.32 Aligned_cols=75 Identities=19% Similarity=0.333 Sum_probs=52.6
Q ss_pred CCccccCCCCCCCCceecCCCCeeeHHhHHHHHHhcCCCCCCCCCCCCCCccccccccccCcccccccccccccCceeEE
Q 007574 38 PFYCCALTFTPFEDPVCTADGSVFELMSITPYIRKYGKHPVTGTPLKLEDLIPLTFHKNAEGEYHCPVLNKVFTEFTHIV 117 (597)
Q Consensus 38 pf~~C~LSl~pl~~PV~t~~G~ly~ke~Il~~L~k~~~~Pvtg~~l~lkdLi~l~f~kn~~~~~~CPvt~k~ft~~t~~v 117 (597)
....|+||++++++||+++-||+|+..+|..||......... ..+ .....+...||+|+..++. ..++
T Consensus 17 ~~~~CpICld~~~dPVvT~CGH~FC~~CI~~wl~~s~~s~~~-----~~~------~~~~k~~~~CPvCR~~Is~-~~Lv 84 (193)
T PLN03208 17 GDFDCNICLDQVRDPVVTLCGHLFCWPCIHKWTYASNNSRQR-----VDQ------YDHKREPPKCPVCKSDVSE-ATLV 84 (193)
T ss_pred CccCCccCCCcCCCcEEcCCCchhHHHHHHHHHHhccccccc-----ccc------ccccCCCCcCCCCCCcCCh-hcEE
Confidence 356799999999999999999999999999999754321110 000 0112355789999999975 4555
Q ss_pred EEecCcc
Q 007574 118 AVKTTGN 124 (597)
Q Consensus 118 ~ik~~G~ 124 (597)
-|-.-|.
T Consensus 85 Piygrg~ 91 (193)
T PLN03208 85 PIYGRGQ 91 (193)
T ss_pred EeeccCC
Confidence 5555554
No 45
>PF13445 zf-RING_UBOX: RING-type zinc-finger; PDB: 2CT2_A.
Probab=97.08 E-value=0.00042 Score=52.21 Aligned_cols=41 Identities=27% Similarity=0.564 Sum_probs=22.2
Q ss_pred cccccccccCceeEEEEecCcceehHHHHHHHhhcc--cCcccc
Q 007574 103 CPVLNKVFTEFTHIVAVKTTGNVFCFEAIKELNIKT--KNWKEL 144 (597)
Q Consensus 103 CPvt~k~ft~~t~~v~ik~~G~V~s~eai~~l~~k~--k~~~~l 144 (597)
|||+.. |++..+.-++-+|||||+++||++|.... ..++||
T Consensus 1 CpIc~e-~~~~~n~P~~L~CGH~~c~~cl~~l~~~~~~~~~kCP 43 (43)
T PF13445_consen 1 CPICKE-FSTEENPPMVLPCGHVFCKDCLQKLSKKSDRNRFKCP 43 (43)
T ss_dssp -TTT-----TTSS-EEE-SSS-EEEHHHHHHHHHH-S-S-B--T
T ss_pred CCcccc-ccCCCCCCEEEeCccHHHHHHHHHHHhcCCCCeeeCc
Confidence 999999 87755554445599999999999987643 345554
No 46
>PLN03208 E3 ubiquitin-protein ligase RMA2; Provisional
Probab=97.05 E-value=0.00079 Score=66.21 Aligned_cols=59 Identities=19% Similarity=0.398 Sum_probs=47.1
Q ss_pred cCcccccccccccccCceeEEEEecCcceehHHHHHHHhh--------------cccCccccCCCCCCCCCCeeEec
Q 007574 97 AEGEYHCPVLNKVFTEFTHIVAVKTTGNVFCFEAIKELNI--------------KTKNWKELLTDEPFTKEDLITIQ 159 (597)
Q Consensus 97 ~~~~~~CPvt~k~ft~~t~~v~ik~~G~V~s~eai~~l~~--------------k~k~~~~lv~~~~f~~~DII~Lq 159 (597)
..+.+.||||...+.+- ++-+|||+||+.||.+... ..+..+||+|-.+++..++|+|-
T Consensus 15 ~~~~~~CpICld~~~dP----VvT~CGH~FC~~CI~~wl~~s~~s~~~~~~~~~~k~~~~CPvCR~~Is~~~LvPiy 87 (193)
T PLN03208 15 SGGDFDCNICLDQVRDP----VVTLCGHLFCWPCIHKWTYASNNSRQRVDQYDHKREPPKCPVCKSDVSEATLVPIY 87 (193)
T ss_pred CCCccCCccCCCcCCCc----EEcCCCchhHHHHHHHHHHhccccccccccccccCCCCcCCCCCCcCChhcEEEee
Confidence 35679999999998754 3458999999999987532 12346899999999999999984
No 47
>PF11789 zf-Nse: Zinc-finger of the MIZ type in Nse subunit; PDB: 2YU4_A 3HTK_C.
Probab=96.78 E-value=0.0013 Score=52.59 Aligned_cols=47 Identities=21% Similarity=0.265 Sum_probs=32.1
Q ss_pred CcccccccccccccCceeEEEEecCcceehHHHHHHHhhcccCccccCCC
Q 007574 98 EGEYHCPVLNKVFTEFTHIVAVKTTGNVFCFEAIKELNIKTKNWKELLTD 147 (597)
Q Consensus 98 ~~~~~CPvt~k~ft~~t~~v~ik~~G~V~s~eai~~l~~k~k~~~~lv~~ 147 (597)
.-.+.||+|.+.|.+- |.-+.|||||..++|.++....+..+||+.|
T Consensus 9 ~~~~~CPiT~~~~~~P---V~s~~C~H~fek~aI~~~i~~~~~~~CPv~G 55 (57)
T PF11789_consen 9 TISLKCPITLQPFEDP---VKSKKCGHTFEKEAILQYIQRNGSKRCPVAG 55 (57)
T ss_dssp B--SB-TTTSSB-SSE---EEESSS--EEEHHHHHHHCTTTS-EE-SCCC
T ss_pred EeccCCCCcCChhhCC---cCcCCCCCeecHHHHHHHHHhcCCCCCCCCC
Confidence 3468999999999876 5567899999999999986556678999944
No 48
>KOG0317 consensus Predicted E3 ubiquitin ligase, integral peroxisomal membrane protein [Posttranslational modification, protein turnover, chaperones]
Probab=96.76 E-value=0.00099 Score=68.69 Aligned_cols=59 Identities=17% Similarity=0.228 Sum_probs=46.7
Q ss_pred CCCCCCCccccCCCCCCCCceecCCCCeeeHHhHHHHHHhcCCCCCCCCCCCCCCcccc
Q 007574 33 PFKRLPFYCCALTFTPFEDPVCTADGSVFELMSITPYIRKYGKHPVTGTPLKLEDLIPL 91 (597)
Q Consensus 33 ~~~~lpf~~C~LSl~pl~~PV~t~~G~ly~ke~Il~~L~k~~~~Pvtg~~l~lkdLi~l 91 (597)
++-+.+=.-|.||+++.++|-|||-|||||=.||++|+.+...+|+.+++....+||=|
T Consensus 233 ~~i~~a~~kC~LCLe~~~~pSaTpCGHiFCWsCI~~w~~ek~eCPlCR~~~~pskvi~L 291 (293)
T KOG0317|consen 233 SSIPEATRKCSLCLENRSNPSATPCGHIFCWSCILEWCSEKAECPLCREKFQPSKVICL 291 (293)
T ss_pred ccCCCCCCceEEEecCCCCCCcCcCcchHHHHHHHHHHccccCCCcccccCCCcceeee
Confidence 34334445799999999999999999999999999999887666666666666665533
No 49
>KOG0823 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.71 E-value=0.0012 Score=66.14 Aligned_cols=56 Identities=21% Similarity=0.441 Sum_probs=45.1
Q ss_pred CCccccCCCCCCCCceecCCCCeeeHHhHHHHHHhcCC---CCCCCCCCCCCCcccccc
Q 007574 38 PFYCCALTFTPFEDPVCTADGSVFELMSITPYIRKYGK---HPVTGTPLKLEDLIPLTF 93 (597)
Q Consensus 38 pf~~C~LSl~pl~~PV~t~~G~ly~ke~Il~~L~k~~~---~Pvtg~~l~lkdLi~l~f 93 (597)
-++-|-|||...+|||+|.-|||||=-||.+||.-+.. +||-...++.+.||||.-
T Consensus 46 ~~FdCNICLd~akdPVvTlCGHLFCWpClyqWl~~~~~~~~cPVCK~~Vs~~~vvPlYG 104 (230)
T KOG0823|consen 46 GFFDCNICLDLAKDPVVTLCGHLFCWPCLYQWLQTRPNSKECPVCKAEVSIDTVVPLYG 104 (230)
T ss_pred CceeeeeeccccCCCEEeecccceehHHHHHHHhhcCCCeeCCccccccccceEEeeec
Confidence 47889999999999999999999999999999975432 466666666666666654
No 50
>KOG2164 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.68 E-value=0.001 Score=73.19 Aligned_cols=56 Identities=25% Similarity=0.432 Sum_probs=48.7
Q ss_pred cccCCCCCCCCceecCCCCeeeHHhHHHHHH-----hcCCCCCCCCCCCCCCccccccccc
Q 007574 41 CCALTFTPFEDPVCTADGSVFELMSITPYIR-----KYGKHPVTGTPLKLEDLIPLTFHKN 96 (597)
Q Consensus 41 ~C~LSl~pl~~PV~t~~G~ly~ke~Il~~L~-----k~~~~Pvtg~~l~lkdLi~l~f~kn 96 (597)
.|||||.|..-|+.+..||+||-.|||+|+. .++.+|+.+..+.++||.++.+...
T Consensus 188 ~CPICL~~~~~p~~t~CGHiFC~~CiLqy~~~s~~~~~~~CPiC~s~I~~kdl~pv~~e~~ 248 (513)
T KOG2164|consen 188 QCPICLEPPSVPVRTNCGHIFCGPCILQYWNYSAIKGPCSCPICRSTITLKDLLPVFIEDD 248 (513)
T ss_pred cCCcccCCCCcccccccCceeeHHHHHHHHhhhcccCCccCCchhhhccccceeeeeeccc
Confidence 6999999999999999999999999999995 3456788888888888888887554
No 51
>KOG0320 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.53 E-value=0.0018 Score=62.63 Aligned_cols=59 Identities=19% Similarity=0.354 Sum_probs=52.0
Q ss_pred CCCCCCccccCCCCCCCC--ceecCCCCeeeHHhHHHHHHhcCCCCCCCCCCCCCCccccc
Q 007574 34 FKRLPFYCCALTFTPFED--PVCTADGSVFELMSITPYIRKYGKHPVTGTPLKLEDLIPLT 92 (597)
Q Consensus 34 ~~~lpf~~C~LSl~pl~~--PV~t~~G~ly~ke~Il~~L~k~~~~Pvtg~~l~lkdLi~l~ 92 (597)
...-+-+-|+|+|.++.. ||.+.-||+||++||-.-|+...++|+.+.+++.|+++++.
T Consensus 126 ~~~~~~~~CPiCl~~~sek~~vsTkCGHvFC~~Cik~alk~~~~CP~C~kkIt~k~~~rI~ 186 (187)
T KOG0320|consen 126 LRKEGTYKCPICLDSVSEKVPVSTKCGHVFCSQCIKDALKNTNKCPTCRKKITHKQFHRIY 186 (187)
T ss_pred cccccccCCCceecchhhccccccccchhHHHHHHHHHHHhCCCCCCcccccchhhheecc
Confidence 344566889999999985 66688899999999999999999999999999999998875
No 52
>PF14634 zf-RING_5: zinc-RING finger domain
Probab=96.05 E-value=0.0055 Score=46.02 Aligned_cols=44 Identities=23% Similarity=0.458 Sum_probs=35.6
Q ss_pred ccccccccccCceeEEEEecCcceehHHHHHHHhhcccCccccCCCC
Q 007574 102 HCPVLNKVFTEFTHIVAVKTTGNVFCFEAIKELNIKTKNWKELLTDE 148 (597)
Q Consensus 102 ~CPvt~k~ft~~t~~v~ik~~G~V~s~eai~~l~~k~k~~~~lv~~~ 148 (597)
+||+++..+++. +..++-+|||+|+.++++.+. .....||+|.+
T Consensus 1 ~C~~C~~~~~~~-~~~~l~~CgH~~C~~C~~~~~--~~~~~CP~C~k 44 (44)
T PF14634_consen 1 HCNICFEKYSEE-RRPRLTSCGHIFCEKCLKKLK--GKSVKCPICRK 44 (44)
T ss_pred CCcCcCccccCC-CCeEEcccCCHHHHHHHHhhc--CCCCCCcCCCC
Confidence 599999999433 346789999999999999986 45568999963
No 53
>PF13923 zf-C3HC4_2: Zinc finger, C3HC4 type (RING finger); PDB: 3HCU_A 2ECI_A 2JMD_A 3HCS_B 3HCT_A 3ZTG_A 2YUR_A 3L11_A.
Probab=95.95 E-value=0.011 Score=43.17 Aligned_cols=39 Identities=31% Similarity=0.452 Sum_probs=30.8
Q ss_pred cccccccccCceeEEEEecCcceehHHHHHHHhhcccCccccCC
Q 007574 103 CPVLNKVFTEFTHIVAVKTTGNVFCFEAIKELNIKTKNWKELLT 146 (597)
Q Consensus 103 CPvt~k~ft~~t~~v~ik~~G~V~s~eai~~l~~k~k~~~~lv~ 146 (597)
|||+...+.+ -+++-+|||+|.+++++++... +.+||+|
T Consensus 1 C~iC~~~~~~---~~~~~~CGH~fC~~C~~~~~~~--~~~CP~C 39 (39)
T PF13923_consen 1 CPICLDELRD---PVVVTPCGHSFCKECIEKYLEK--NPKCPVC 39 (39)
T ss_dssp ETTTTSB-SS---EEEECTTSEEEEHHHHHHHHHC--TSB-TTT
T ss_pred CCCCCCcccC---cCEECCCCCchhHHHHHHHHHC--cCCCcCC
Confidence 8999998887 4568999999999999997554 4689887
No 54
>PF13923 zf-C3HC4_2: Zinc finger, C3HC4 type (RING finger); PDB: 3HCU_A 2ECI_A 2JMD_A 3HCS_B 3HCT_A 3ZTG_A 2YUR_A 3L11_A.
Probab=95.93 E-value=0.0085 Score=43.70 Aligned_cols=36 Identities=33% Similarity=0.581 Sum_probs=29.9
Q ss_pred ccCCCCCCCCc-eecCCCCeeeHHhHHHHHHhcCCCC
Q 007574 42 CALTFTPFEDP-VCTADGSVFELMSITPYIRKYGKHP 77 (597)
Q Consensus 42 C~LSl~pl~~P-V~t~~G~ly~ke~Il~~L~k~~~~P 77 (597)
|+|.++.+.+| |+++-||+|.++.|..||+.....|
T Consensus 1 C~iC~~~~~~~~~~~~CGH~fC~~C~~~~~~~~~~CP 37 (39)
T PF13923_consen 1 CPICLDELRDPVVVTPCGHSFCKECIEKYLEKNPKCP 37 (39)
T ss_dssp ETTTTSB-SSEEEECTTSEEEEHHHHHHHHHCTSB-T
T ss_pred CCCCCCcccCcCEECCCCCchhHHHHHHHHHCcCCCc
Confidence 89999999999 5688899999999999998854444
No 55
>TIGR03268 methan_mark_3 putative methanogenesis marker protein 3. A single member of this protein family is found in each of the first ten complete genome sequences of archaeal methanogens, and nowhere else. This protein family was detected by the method of partial phylogenetic profiling (see Haft, et al., 2006). The functions of proteins in this family are unknown, but their role is likely one essential to methanogenesis.
Probab=95.89 E-value=0.024 Score=62.73 Aligned_cols=101 Identities=26% Similarity=0.431 Sum_probs=65.8
Q ss_pred EEEEeCCCCChhhHHHHHHHHhccccCCceEEEeecCcEEEecCCCCCCCCCCccCCCCCCCcccccccCCCccEEEEec
Q 007574 360 LNIELHCDITPRSCENFITLCERGYYNGVAFHRSIRNFMIQGGDPTGTGRGGESIWGKPFKDEVNSKLLHSGRGVVSMAN 439 (597)
Q Consensus 360 I~IEL~~d~aP~tv~NFl~L~~~g~Y~gt~fhRvi~~f~IQgGdptg~g~gg~si~g~~f~dE~~~~l~h~~rG~lsman 439 (597)
+.+||.+ .+|.+++.|+.+.+.|++. +-+....|+- ..+.-|...+.| +. ..-.+|+|.+.|
T Consensus 203 ~evE~~~-~~p~s~EH~la~~~~G~~~---Vd~~tsTfi~-----------d~~L~g~~~p~E-n~--~~R~rGtVTVRn 264 (503)
T TIGR03268 203 VEVELDP-NAPVSVEHFLALMEDGTFR---VDYRTSTFIS-----------DDSLRGLDKPEE-NI--EKRRRGAVTVRN 264 (503)
T ss_pred EEEEEcC-CCChhHHHHHHHHhCCeEE---EeeeecceEe-----------cccccCccCCcc-cc--CcccceeEEEEe
Confidence 5567654 5999999999999988732 1111111111 112224455555 22 223599999999
Q ss_pred CCCCCCCcceEEeccCCCCCCCCCcEEEEEEcChHHHHHHhc
Q 007574 440 SGPHTNGSQFFILYKSATHLNYKHTVFGGVVGGLTTLAAMEK 481 (597)
Q Consensus 440 ~g~ntngSqFFItl~~~p~LD~k~tVFGrVv~G~dvL~~Ie~ 481 (597)
.|.+. ...||.-.+.+ ..-.|+|+|+|+.|||+++--+.
T Consensus 265 ~G~G~--G~VYIYredr~-ss~sHtvVG~V~~GiELid~a~~ 303 (503)
T TIGR03268 265 SGVGE--GRVYIYREDRP-SSLSHNVVGHVTRGIELIDIAQE 303 (503)
T ss_pred eccCc--eeEEEEcCCCC-CCcccceeEEEecceeeeecccC
Confidence 87653 35888876654 46679999999999999875443
No 56
>PRK00969 hypothetical protein; Provisional
Probab=95.79 E-value=0.026 Score=62.62 Aligned_cols=102 Identities=25% Similarity=0.451 Sum_probs=66.3
Q ss_pred eEEEEeCCCCChhhHHHHHHHHhccccCCceEEEeecCcEEEecCCCCCCCCCCccCCCCCCCcccccccCCCccEEEEe
Q 007574 359 DLNIELHCDITPRSCENFITLCERGYYNGVAFHRSIRNFMIQGGDPTGTGRGGESIWGKPFKDEVNSKLLHSGRGVVSMA 438 (597)
Q Consensus 359 ~I~IEL~~d~aP~tv~NFl~L~~~g~Y~gt~fhRvi~~f~IQgGdptg~g~gg~si~g~~f~dE~~~~l~h~~rG~lsma 438 (597)
.+.+||.++ +|.+++.|+.+.+.|.+. +-+....|+- | .+.-|...+.| +.. .-.+|+|.+.
T Consensus 205 y~eve~~~~-~p~s~EH~la~~~~G~f~---Vd~~tstfI~---d--------~~L~g~~~p~E-n~~--~R~~GtVTVR 266 (508)
T PRK00969 205 YVEVELDPG-APKSVEHFLALLEDGTFE---VDFETSTFIA---D--------DRLQGLKIPEE-NFE--PRRRGTVTVR 266 (508)
T ss_pred EEEEEEcCC-CCchHHHHHHHHhCCeEE---EeeeecceEe---e--------ccccCccCCcc-ccC--ccccceEEEE
Confidence 355677654 999999999999988732 1111111111 1 12224455555 332 2359999999
Q ss_pred cCCCCCCCcceEEeccCCCCCCCCCcEEEEEEcChHHHHHHhc
Q 007574 439 NSGPHTNGSQFFILYKSATHLNYKHTVFGGVVGGLTTLAAMEK 481 (597)
Q Consensus 439 n~g~ntngSqFFItl~~~p~LD~k~tVFGrVv~G~dvL~~Ie~ 481 (597)
|.|.+. ..-||.-.+.+ ..-.|+|+|+|+.|||+++--+.
T Consensus 267 t~G~g~--G~vYIyredr~-ss~sHtvVG~V~~GiELi~~a~~ 306 (508)
T PRK00969 267 TAGVGV--GKVYIYREDRP-SSLSHTVVGRVTHGIELIDFAKE 306 (508)
T ss_pred eeccCc--eeEEEECCCCC-CCccceeEEEEecceeeeecccC
Confidence 987654 35888876655 45679999999999998875433
No 57
>KOG2164 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=95.61 E-value=0.0065 Score=67.10 Aligned_cols=55 Identities=20% Similarity=0.344 Sum_probs=42.6
Q ss_pred ccccccccccccCceeEEEEe-cCcceehHHHHHHHhh---cccCccccCCCCCCCCCCeeEec
Q 007574 100 EYHCPVLNKVFTEFTHIVAVK-TTGNVFCFEAIKELNI---KTKNWKELLTDEPFTKEDLITIQ 159 (597)
Q Consensus 100 ~~~CPvt~k~ft~~t~~v~ik-~~G~V~s~eai~~l~~---k~k~~~~lv~~~~f~~~DII~Lq 159 (597)
.+.||||.-... |+.+ .||||||..||=++-- ......||+|...+..+|+-++-
T Consensus 186 ~~~CPICL~~~~-----~p~~t~CGHiFC~~CiLqy~~~s~~~~~~~CPiC~s~I~~kdl~pv~ 244 (513)
T KOG2164|consen 186 DMQCPICLEPPS-----VPVRTNCGHIFCGPCILQYWNYSAIKGPCSCPICRSTITLKDLLPVF 244 (513)
T ss_pred CCcCCcccCCCC-----cccccccCceeeHHHHHHHHhhhcccCCccCCchhhhccccceeeee
Confidence 688999998776 3333 4999999999988643 23456899999999988887763
No 58
>TIGR00599 rad18 DNA repair protein rad18. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=95.56 E-value=0.0086 Score=65.34 Aligned_cols=34 Identities=21% Similarity=0.280 Sum_probs=31.7
Q ss_pred CccccCCCCCCCCceecCCCCeeeHHhHHHHHHh
Q 007574 39 FYCCALTFTPFEDPVCTADGSVFELMSITPYIRK 72 (597)
Q Consensus 39 f~~C~LSl~pl~~PV~t~~G~ly~ke~Il~~L~k 72 (597)
...|+||+..|.+||+++-||.||..||..||..
T Consensus 26 ~l~C~IC~d~~~~PvitpCgH~FCs~CI~~~l~~ 59 (397)
T TIGR00599 26 SLRCHICKDFFDVPVLTSCSHTFCSLCIRRCLSN 59 (397)
T ss_pred ccCCCcCchhhhCccCCCCCCchhHHHHHHHHhC
Confidence 5689999999999999999999999999999863
No 59
>TIGR00599 rad18 DNA repair protein rad18. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=95.30 E-value=0.014 Score=63.64 Aligned_cols=52 Identities=15% Similarity=0.222 Sum_probs=41.3
Q ss_pred CcccccccccccccCceeEEEEecCcceehHHHHHHHhhcccCccccCCCCCCCCCCe
Q 007574 98 EGEYHCPVLNKVFTEFTHIVAVKTTGNVFCFEAIKELNIKTKNWKELLTDEPFTKEDL 155 (597)
Q Consensus 98 ~~~~~CPvt~k~ft~~t~~v~ik~~G~V~s~eai~~l~~k~k~~~~lv~~~~f~~~DI 155 (597)
...++||||...|.+. ++-+|||+||..||.++... ...||+|..++...++
T Consensus 24 e~~l~C~IC~d~~~~P----vitpCgH~FCs~CI~~~l~~--~~~CP~Cr~~~~~~~L 75 (397)
T TIGR00599 24 DTSLRCHICKDFFDVP----VLTSCSHTFCSLCIRRCLSN--QPKCPLCRAEDQESKL 75 (397)
T ss_pred ccccCCCcCchhhhCc----cCCCCCCchhHHHHHHHHhC--CCCCCCCCCccccccC
Confidence 5679999999999765 25799999999999986543 3479999998875533
No 60
>KOG0317 consensus Predicted E3 ubiquitin ligase, integral peroxisomal membrane protein [Posttranslational modification, protein turnover, chaperones]
Probab=95.30 E-value=0.013 Score=60.64 Aligned_cols=56 Identities=20% Similarity=0.372 Sum_probs=43.9
Q ss_pred CcccccccccccccCceeEEEEecCcceehHHHHHHHhhcccCccccCCCCCCCCCCeeEec
Q 007574 98 EGEYHCPVLNKVFTEFTHIVAVKTTGNVFCFEAIKELNIKTKNWKELLTDEPFTKEDLITIQ 159 (597)
Q Consensus 98 ~~~~~CPvt~k~ft~~t~~v~ik~~G~V~s~eai~~l~~k~k~~~~lv~~~~f~~~DII~Lq 159 (597)
.+.+.|-+|.....+-+ .-||||+|||.||-+-..+.. .||+|-++|+..+||.|+
T Consensus 237 ~a~~kC~LCLe~~~~pS----aTpCGHiFCWsCI~~w~~ek~--eCPlCR~~~~pskvi~Lr 292 (293)
T KOG0317|consen 237 EATRKCSLCLENRSNPS----ATPCGHIFCWSCILEWCSEKA--ECPLCREKFQPSKVICLR 292 (293)
T ss_pred CCCCceEEEecCCCCCC----cCcCcchHHHHHHHHHHcccc--CCCcccccCCCcceeeec
Confidence 35578888876664432 468999999999998654433 599999999999999886
No 61
>PF13639 zf-RING_2: Ring finger domain; PDB: 2KIZ_A 4EPO_C 1IYM_A 2EP4_A 2ECT_A 2JRJ_A 2ECN_A 2ECM_A 3NG2_A 2EA6_A ....
Probab=95.08 E-value=0.021 Score=42.66 Aligned_cols=42 Identities=24% Similarity=0.352 Sum_probs=33.3
Q ss_pred ccccccccccCceeEEEEecCcceehHHHHHHHhhcccCccccCC
Q 007574 102 HCPVLNKVFTEFTHIVAVKTTGNVFCFEAIKELNIKTKNWKELLT 146 (597)
Q Consensus 102 ~CPvt~k~ft~~t~~v~ik~~G~V~s~eai~~l~~k~k~~~~lv~ 146 (597)
.|||+...|.....++.+. |||+|.+++|.+..... ..||+|
T Consensus 2 ~C~IC~~~~~~~~~~~~l~-C~H~fh~~Ci~~~~~~~--~~CP~C 43 (44)
T PF13639_consen 2 ECPICLEEFEDGEKVVKLP-CGHVFHRSCIKEWLKRN--NSCPVC 43 (44)
T ss_dssp CETTTTCBHHTTSCEEEET-TSEEEEHHHHHHHHHHS--SB-TTT
T ss_pred CCcCCChhhcCCCeEEEcc-CCCeeCHHHHHHHHHhC--CcCCcc
Confidence 4999999998766666555 99999999999976543 489987
No 62
>PF13920 zf-C3HC4_3: Zinc finger, C3HC4 type (RING finger); PDB: 2YHN_B 2YHO_G 3T6P_A 2CSY_A 2VJE_B 2VJF_B 2HDP_B 2EA5_A 2ECG_A 3EB5_A ....
Probab=95.07 E-value=0.033 Score=42.81 Aligned_cols=46 Identities=22% Similarity=0.411 Sum_probs=36.2
Q ss_pred ccccccccccccCceeEEEEecCcce-ehHHHHHHHhhcccCccccCCCCCCC
Q 007574 100 EYHCPVLNKVFTEFTHIVAVKTTGNV-FCFEAIKELNIKTKNWKELLTDEPFT 151 (597)
Q Consensus 100 ~~~CPvt~k~ft~~t~~v~ik~~G~V-~s~eai~~l~~k~k~~~~lv~~~~f~ 151 (597)
+..|+|++..+.+ +++.||||+ |+.+++.++.. ...+||+|..+++
T Consensus 2 ~~~C~iC~~~~~~----~~~~pCgH~~~C~~C~~~~~~--~~~~CP~Cr~~i~ 48 (50)
T PF13920_consen 2 DEECPICFENPRD----VVLLPCGHLCFCEECAERLLK--RKKKCPICRQPIE 48 (50)
T ss_dssp HSB-TTTSSSBSS----EEEETTCEEEEEHHHHHHHHH--TTSBBTTTTBB-S
T ss_pred cCCCccCCccCCc----eEEeCCCChHHHHHHhHHhcc--cCCCCCcCChhhc
Confidence 4679999887664 678899999 99999999865 3458999998875
No 63
>KOG2979 consensus Protein involved in DNA repair [General function prediction only]
Probab=94.80 E-value=0.012 Score=60.10 Aligned_cols=33 Identities=21% Similarity=0.337 Sum_probs=29.7
Q ss_pred ccccCCCCCCCCceecCC-CCeeeHHhHHHHHHh
Q 007574 40 YCCALTFTPFEDPVCTAD-GSVFELMSITPYIRK 72 (597)
Q Consensus 40 ~~C~LSl~pl~~PV~t~~-G~ly~ke~Il~~L~k 72 (597)
+.||||+.|..+||++.. ||+|++.+|+++|..
T Consensus 177 ~rdPis~~~I~nPviSkkC~HvydrDsI~~~l~~ 210 (262)
T KOG2979|consen 177 NRDPISKKPIVNPVISKKCGHVYDRDSIMQILCD 210 (262)
T ss_pred ccCchhhhhhhchhhhcCcCcchhhhhHHHHhcc
Confidence 469999999999999765 999999999999864
No 64
>KOG3039 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.57 E-value=0.03 Score=56.73 Aligned_cols=54 Identities=33% Similarity=0.461 Sum_probs=47.2
Q ss_pred CccccCCCCCCCCc----eecCCCCeeeHHhHHHHHHhcCCCCCCCCCCCCCCccccc
Q 007574 39 FYCCALTFTPFEDP----VCTADGSVFELMSITPYIRKYGKHPVTGTPLKLEDLIPLT 92 (597)
Q Consensus 39 f~~C~LSl~pl~~P----V~t~~G~ly~ke~Il~~L~k~~~~Pvtg~~l~lkdLi~l~ 92 (597)
-+.||++-.-|.+- |..+.|+++.++++..+|.+.+.+|++++||+-+|||.|.
T Consensus 221 ryiCpvtrd~LtNt~~ca~Lr~sg~Vv~~ecvEklir~D~v~pv~d~plkdrdiI~Lq 278 (303)
T KOG3039|consen 221 RYICPVTRDTLTNTTPCAVLRPSGHVVTKECVEKLIRKDMVDPVTDKPLKDRDIIGLQ 278 (303)
T ss_pred ceecccchhhhcCccceEEeccCCcEeeHHHHHHhccccccccCCCCcCcccceEeee
Confidence 35688888777753 3377899999999999999999999999999999999987
No 65
>PF15227 zf-C3HC4_4: zinc finger of C3HC4-type, RING; PDB: 2EGP_A 2ECV_A 2ECJ_A 2YSL_A 2YSJ_A.
Probab=94.31 E-value=0.046 Score=40.87 Aligned_cols=32 Identities=22% Similarity=0.421 Sum_probs=27.9
Q ss_pred ccCCCCCCCCceecCCCCeeeHHhHHHHHHhc
Q 007574 42 CALTFTPFEDPVCTADGSVFELMSITPYIRKY 73 (597)
Q Consensus 42 C~LSl~pl~~PV~t~~G~ly~ke~Il~~L~k~ 73 (597)
|+|+++.|.+||..+=||.|++..|..|.++.
T Consensus 1 CpiC~~~~~~Pv~l~CGH~FC~~Cl~~~~~~~ 32 (42)
T PF15227_consen 1 CPICLDLFKDPVSLPCGHSFCRSCLERLWKEP 32 (42)
T ss_dssp ETTTTSB-SSEEE-SSSSEEEHHHHHHHHCCS
T ss_pred CCccchhhCCccccCCcCHHHHHHHHHHHHcc
Confidence 89999999999999999999999999998653
No 66
>PHA02929 N1R/p28-like protein; Provisional
Probab=94.29 E-value=0.035 Score=56.77 Aligned_cols=44 Identities=23% Similarity=0.313 Sum_probs=34.9
Q ss_pred CccccCCCCCCCCc--------eecCCCCeeeHHhHHHHHHhcCCCCCCCCC
Q 007574 39 FYCCALTFTPFEDP--------VCTADGSVFELMSITPYIRKYGKHPVTGTP 82 (597)
Q Consensus 39 f~~C~LSl~pl~~P--------V~t~~G~ly~ke~Il~~L~k~~~~Pvtg~~ 82 (597)
-..|+||++++.++ ++++-||+|++++|.+|+..+.++|+-+.+
T Consensus 174 ~~eC~ICle~~~~~~~~~~~~~vl~~C~H~FC~~CI~~Wl~~~~tCPlCR~~ 225 (238)
T PHA02929 174 DKECAICMEKVYDKEIKNMYFGILSNCNHVFCIECIDIWKKEKNTCPVCRTP 225 (238)
T ss_pred CCCCccCCcccccCccccccceecCCCCCcccHHHHHHHHhcCCCCCCCCCE
Confidence 46799999998764 456779999999999999876666665543
No 67
>PF00097 zf-C3HC4: Zinc finger, C3HC4 type (RING finger); InterPro: IPR018957 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C3HC4 type zinc-finger (RING finger) is a cysteine-rich domain of 40 to 60 residues that coordinates two zinc ions, and has the consensus sequence: C-X2-C-X(9-39)-C-X(1-3)-H-X(2-3)-C-X2-C-X(4-48)-C-X2-C where X is any amino acid []. Many proteins containing a RING finger play a key role in the ubiquitination pathway []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 1CHC_A 2ECW_A 2Y43_B 1V87_A 2DJB_A 2H0D_B 3RPG_C 3KNV_A 2CKL_B 1JM7_A ....
Probab=94.13 E-value=0.064 Score=39.17 Aligned_cols=41 Identities=20% Similarity=0.391 Sum_probs=34.0
Q ss_pred cccccccccCceeEEEEecCcceehHHHHHHHhhcccCccccCC
Q 007574 103 CPVLNKVFTEFTHIVAVKTTGNVFCFEAIKELNIKTKNWKELLT 146 (597)
Q Consensus 103 CPvt~k~ft~~t~~v~ik~~G~V~s~eai~~l~~k~k~~~~lv~ 146 (597)
|||+...+.... .+.+|||.|...++.++........||+|
T Consensus 1 C~iC~~~~~~~~---~~~~C~H~fC~~C~~~~~~~~~~~~CP~C 41 (41)
T PF00097_consen 1 CPICLEPFEDPV---ILLPCGHSFCRDCLRKWLENSGSVKCPLC 41 (41)
T ss_dssp ETTTSSBCSSEE---EETTTSEEEEHHHHHHHHHHTSSSBTTTT
T ss_pred CCcCCccccCCC---EEecCCCcchHHHHHHHHHhcCCccCCcC
Confidence 788888888664 68999999999999998765566778876
No 68
>COG5574 PEX10 RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=94.06 E-value=0.033 Score=57.12 Aligned_cols=51 Identities=25% Similarity=0.366 Sum_probs=43.5
Q ss_pred cccCCCCCCCCceecCCCCeeeHHhHHH-HHHhc-CCCCCCCCCCCCCCcccc
Q 007574 41 CCALTFTPFEDPVCTADGSVFELMSITP-YIRKY-GKHPVTGTPLKLEDLIPL 91 (597)
Q Consensus 41 ~C~LSl~pl~~PV~t~~G~ly~ke~Il~-~L~k~-~~~Pvtg~~l~lkdLi~l 91 (597)
-|+||+++...|+|++-|||||.-||+. |=.+. ..+|+.+....++++|=|
T Consensus 217 kC~lC~e~~~~ps~t~CgHlFC~~Cl~~~~t~~k~~~CplCRak~~pk~viil 269 (271)
T COG5574 217 KCFLCLEEPEVPSCTPCGHLFCLSCLLISWTKKKYEFCPLCRAKVYPKKVIIL 269 (271)
T ss_pred ceeeeecccCCcccccccchhhHHHHHHHHHhhccccCchhhhhccchhhhee
Confidence 3999999999999999999999999999 76554 448999888888877544
No 69
>COG4070 Predicted peptidyl-prolyl cis-trans isomerase (rotamase), cyclophilin family [Posttranslational modification, protein turnover, chaperones]
Probab=93.41 E-value=0.14 Score=55.07 Aligned_cols=98 Identities=26% Similarity=0.474 Sum_probs=65.4
Q ss_pred eEEEEeCCCCChhhHHHHHHHHhccc----cCCceEEEeecCcEEEecCCCCCCCCCCccCCCCCCCcccccccCCCccE
Q 007574 359 DLNIELHCDITPRSCENFITLCERGY----YNGVAFHRSIRNFMIQGGDPTGTGRGGESIWGKPFKDEVNSKLLHSGRGV 434 (597)
Q Consensus 359 ~I~IEL~~d~aP~tv~NFl~L~~~g~----Y~gt~fhRvi~~f~IQgGdptg~g~gg~si~g~~f~dE~~~~l~h~~rG~ 434 (597)
.+.+||-.+ +|++++.|+.|.+.|. |+-..| | +..+..+.+.+.| +..+. .||.
T Consensus 204 y~eve~s~n-sP~saEH~lalmedG~lri~~~tntf--------i----------s~~~lq~~~~~~e-n~d~R--erG~ 261 (512)
T COG4070 204 YFEVELSRN-SPKSAEHFLALMEDGTLRIDVTTNTF--------I----------SDDTLQEEKVPEE-NFDLR--ERGA 261 (512)
T ss_pred EEEEEeCCC-CchhHHHHHHHhhcceEEEEEeccce--------e----------eccccccccCChh-hhhhh--hcce
Confidence 456777654 9999999999998775 222222 1 1112224455555 44444 4999
Q ss_pred EEEecCCCCCCCcceEEeccCCCCCCCCCcEEEEEEcChHHHHHHhc
Q 007574 435 VSMANSGPHTNGSQFFILYKSATHLNYKHTVFGGVVGGLTTLAAMEK 481 (597)
Q Consensus 435 lsman~g~ntngSqFFItl~~~p~LD~k~tVFGrVv~G~dvL~~Ie~ 481 (597)
+++.|.|-++ ..-||.-.+-+ ---.|.|+|||++||++++--+.
T Consensus 262 iTvRn~Gvge--GrvYIyRedR~-ss~sHnvVGrV~eGiELid~a~e 305 (512)
T COG4070 262 ITVRNVGVGE--GRVYIYREDRP-SSLSHNVVGRVIEGIELIDLAEE 305 (512)
T ss_pred EEEEeeeccc--ceEEEEecCCC-CccccceeeeeecceEEEEeccc
Confidence 9999987543 35788766554 34578999999999998875544
No 70
>PF12903 DUF3830: Protein of unknown function (DUF3830); InterPro: IPR024532 This is a family of bacterial and archaeal proteins. The structure of one of family members, A0JVT3 from SWISSPROT, has been characterised and shown to contain a cyclophilin-like fold.; PDB: 3KOP_B.
Probab=93.28 E-value=0.17 Score=48.06 Aligned_cols=107 Identities=21% Similarity=0.219 Sum_probs=51.5
Q ss_pred eeEEEEeCCCCChhhHHHHHHHHhccccCCceEEEeecC--cEEEecCCCCCCCCCCccCCCCCCCcccccccCCCccEE
Q 007574 358 GDLNIELHCDITPRSCENFITLCERGYYNGVAFHRSIRN--FMIQGGDPTGTGRGGESIWGKPFKDEVNSKLLHSGRGVV 435 (597)
Q Consensus 358 G~I~IEL~~d~aP~tv~NFl~L~~~g~Y~gt~fhRvi~~--f~IQgGdptg~g~gg~si~g~~f~dE~~~~l~h~~rG~l 435 (597)
-.++.+|+.|.||+||+.|..+. =|.+..+|-..-+ .+|.-++....+. .-| +.-.|..+|-|
T Consensus 8 ~~~~A~l~~d~AP~Tcaa~~~~L---P~~~~~~HarwSG~ei~~~l~~~~~~~~----------~~E--N~T~~P~pGdi 72 (147)
T PF12903_consen 8 VSFTARLLDDKAPKTCAAFWEAL---PLKGKVIHARWSGEEIWIPLPDFDPFEP----------GRE--NHTVTPIPGDI 72 (147)
T ss_dssp EEEEEEE-TTTSHHHHHHHHHH-----EEEE-EE-SSSSSEEEEEEE--SSS-------------S---SEESS--TTEE
T ss_pred eEEEEEEcccCChHHHHHHHHhC---CCCCcEEEEEEECcEEEEECCCcCcCCC----------CCC--cCcccCCCCcE
Confidence 46889999999999999999986 2444444433332 3444444321111 122 22344557776
Q ss_pred EEe--c-CCCCCC-C--cc--eEEeccCC------CCCCCCCcEEEEEEcChHHHHHHhc
Q 007574 436 SMA--N-SGPHTN-G--SQ--FFILYKSA------THLNYKHTVFGGVVGGLTTLAAMEK 481 (597)
Q Consensus 436 sma--n-~g~ntn-g--Sq--FFItl~~~------p~LD~k~tVFGrVv~G~dvL~~Ie~ 481 (597)
.+. . ...+.+ | +. +|+-+... -+|-+ .+|++|++|+|-|.++-+
T Consensus 73 ~~~y~~~~~~~~~pg~~~e~~i~yg~g~~~f~~~~G~l~G--N~FatI~egle~la~~~~ 130 (147)
T PF12903_consen 73 LLYYEPGSAWGGNPGGISETEIFYGYGNLLFASKMGWLPG--NHFATITEGLEELAEACR 130 (147)
T ss_dssp EEE-----------E-EEEEEEE-SSS---EETTTEE--E--EEEEEEEESHHHHHHHHH
T ss_pred EEEecCCccccCCCcceEEEEEEEeeCceEecCCccccce--eEEEEEcCCHHHHHHHHH
Confidence 665 1 111111 1 23 33333322 22333 389999999998877644
No 71
>cd00162 RING RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in mediating protein-protein interactions; identified in a proteins with a wide range of functions such as viral replication, signal transduction, and development; has two variants, the C3HC4-type and a C3H2C3-type (RING-H2 finger), which have different cysteine/histidine pattern; a subset of RINGs are associated with B-Boxes (C-X2-H-X7-C-X7-C-X2-C-H-X2-H)
Probab=93.26 E-value=0.1 Score=37.68 Aligned_cols=44 Identities=25% Similarity=0.407 Sum_probs=33.2
Q ss_pred ccccccccccCceeEEEEecCcceehHHHHHHHhhcccCccccCCCCC
Q 007574 102 HCPVLNKVFTEFTHIVAVKTTGNVFCFEAIKELNIKTKNWKELLTDEP 149 (597)
Q Consensus 102 ~CPvt~k~ft~~t~~v~ik~~G~V~s~eai~~l~~k~k~~~~lv~~~~ 149 (597)
.|||+...+. ..+.+.+|||.|...+++++... ...+||+|...
T Consensus 1 ~C~iC~~~~~---~~~~~~~C~H~~c~~C~~~~~~~-~~~~Cp~C~~~ 44 (45)
T cd00162 1 ECPICLEEFR---EPVVLLPCGHVFCRSCIDKWLKS-GKNTCPLCRTP 44 (45)
T ss_pred CCCcCchhhh---CceEecCCCChhcHHHHHHHHHh-CcCCCCCCCCc
Confidence 3888888883 33556679999999999987543 35689999764
No 72
>COG5574 PEX10 RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=93.04 E-value=0.076 Score=54.51 Aligned_cols=57 Identities=16% Similarity=0.171 Sum_probs=44.7
Q ss_pred CcccccccccccccCceeEEEEecCcceehHHHHHHHhhcccCccccCCCCCCCCCCeeEe
Q 007574 98 EGEYHCPVLNKVFTEFTHIVAVKTTGNVFCFEAIKELNIKTKNWKELLTDEPFTKEDLITI 158 (597)
Q Consensus 98 ~~~~~CPvt~k~ft~~t~~v~ik~~G~V~s~eai~~l~~k~k~~~~lv~~~~f~~~DII~L 158 (597)
.+.|-|++|.-....- .-.+||||||+-||-..-.+.+.-.||+|-.+.-.++||.|
T Consensus 213 ~~d~kC~lC~e~~~~p----s~t~CgHlFC~~Cl~~~~t~~k~~~CplCRak~~pk~viil 269 (271)
T COG5574 213 LADYKCFLCLEEPEVP----SCTPCGHLFCLSCLLISWTKKKYEFCPLCRAKVYPKKVIIL 269 (271)
T ss_pred ccccceeeeecccCCc----ccccccchhhHHHHHHHHHhhccccCchhhhhccchhhhee
Confidence 4579999998777643 35789999999999884444555579999998888888765
No 73
>PF15227 zf-C3HC4_4: zinc finger of C3HC4-type, RING; PDB: 2EGP_A 2ECV_A 2ECJ_A 2YSL_A 2YSJ_A.
Probab=93.01 E-value=0.13 Score=38.47 Aligned_cols=40 Identities=20% Similarity=0.404 Sum_probs=28.1
Q ss_pred cccccccccCceeEEEEecCcceehHHHHHHHhhcccC--ccccCC
Q 007574 103 CPVLNKVFTEFTHIVAVKTTGNVFCFEAIKELNIKTKN--WKELLT 146 (597)
Q Consensus 103 CPvt~k~ft~~t~~v~ik~~G~V~s~eai~~l~~k~k~--~~~lv~ 146 (597)
|||+...|++- | .-+|||+|+..+|.++...... +.||+|
T Consensus 1 CpiC~~~~~~P---v-~l~CGH~FC~~Cl~~~~~~~~~~~~~CP~C 42 (42)
T PF15227_consen 1 CPICLDLFKDP---V-SLPCGHSFCRSCLERLWKEPSGSGFSCPEC 42 (42)
T ss_dssp ETTTTSB-SSE---E-E-SSSSEEEHHHHHHHHCCSSSST---SSS
T ss_pred CCccchhhCCc---c-ccCCcCHHHHHHHHHHHHccCCcCCCCcCC
Confidence 89999999876 2 3489999999999998765433 467776
No 74
>PF13639 zf-RING_2: Ring finger domain; PDB: 2KIZ_A 4EPO_C 1IYM_A 2EP4_A 2ECT_A 2JRJ_A 2ECN_A 2ECM_A 3NG2_A 2EA6_A ....
Probab=92.89 E-value=0.1 Score=38.83 Aligned_cols=39 Identities=26% Similarity=0.461 Sum_probs=30.3
Q ss_pred ccccCCCCCCC---CceecCCCCeeeHHhHHHHHHhcCCCCC
Q 007574 40 YCCALTFTPFE---DPVCTADGSVFELMSITPYIRKYGKHPV 78 (597)
Q Consensus 40 ~~C~LSl~pl~---~PV~t~~G~ly~ke~Il~~L~k~~~~Pv 78 (597)
+.|+|+++.+. .++..+-||+|..++|.+||+.+...|+
T Consensus 1 d~C~IC~~~~~~~~~~~~l~C~H~fh~~Ci~~~~~~~~~CP~ 42 (44)
T PF13639_consen 1 DECPICLEEFEDGEKVVKLPCGHVFHRSCIKEWLKRNNSCPV 42 (44)
T ss_dssp -CETTTTCBHHTTSCEEEETTSEEEEHHHHHHHHHHSSB-TT
T ss_pred CCCcCCChhhcCCCeEEEccCCCeeCHHHHHHHHHhCCcCCc
Confidence 46999999984 3455677999999999999998765554
No 75
>PRK00969 hypothetical protein; Provisional
Probab=92.41 E-value=0.86 Score=50.99 Aligned_cols=117 Identities=20% Similarity=0.255 Sum_probs=69.9
Q ss_pred ceEEEEEEeCeeEEEEeCCCCChhhHHHHHHHHhccccCCceEEEeecCcEEEecCCCCCCCCCCccCCCCCCCcccccc
Q 007574 348 KGYVQLHTTHGDLNIELHCDITPRSCENFITLCERGYYNGVAFHRSIRNFMIQGGDPTGTGRGGESIWGKPFKDEVNSKL 427 (597)
Q Consensus 348 ~~~V~l~T~~G~I~IEL~~d~aP~tv~NFl~L~~~g~Y~gt~fhRvi~~f~IQgGdptg~g~gg~si~g~~f~dE~~~~l 427 (597)
....+|.|+.|.|+|||. ....++.-|+..++. |.|...|...++-+.. |-+.-. -.+-..+
T Consensus 50 ~~~y~IkTtkG~i~Iel~--~~~~~~~~w~e~yk~--~e~~~i~W~s~~~vAf-Gp~~s~--------l~p~~~~----- 111 (508)
T PRK00969 50 TKKYRIKTTKGEIVIELT--EENESVDFWLENYKE--FEGKSLRWTSRSAVAF-GPFESD--------LEPSREE----- 111 (508)
T ss_pred cceEEEEccCceEEEEEc--cCcchhhHHHHhHHh--hcCCceEeccccceeE-cccccC--------cccccCc-----
Confidence 456789999999999999 444455555554432 5666666555544333 321100 0111111
Q ss_pred cCCCccEEEEecCCCCCCCcceEEeccCCCCCCC--CCcEEEEEEcChHHHHHHhcC
Q 007574 428 LHSGRGVVSMANSGPHTNGSQFFILYKSATHLNY--KHTVFGGVVGGLTTLAAMEKV 482 (597)
Q Consensus 428 ~h~~rG~lsman~g~ntngSqFFItl~~~p~LD~--k~tVFGrVv~G~dvL~~Ie~~ 482 (597)
....++-|.+.-+|-+...+.+.|+.++....-| .--|||+||.|..+|++|...
T Consensus 112 ~~y~r~DV~lg~~G~dp~~thLIfsk~~h~a~YG~p~~gv~grVi~Gk~vl~~L~~~ 168 (508)
T PRK00969 112 YEYERWDVVLSLSGFDPSETHLIFSKRDHSADYGAPNDGVIGRVVGGKRVLDRLTDG 168 (508)
T ss_pred ceeecccEEEEccCCCCCCceEEEEecchhhhhCCCCCCceEEEccchhhHhhccCC
Confidence 2235778888888766656666666543211101 126999999999999999763
No 76
>KOG0826 consensus Predicted E3 ubiquitin ligase involved in peroxisome organization [Posttranslational modification, protein turnover, chaperones]
Probab=92.28 E-value=0.052 Score=57.17 Aligned_cols=56 Identities=25% Similarity=0.352 Sum_probs=44.0
Q ss_pred cccccccccccccCceeEEEEecCcceehHHHHHHHhhcccCccccCCCCCCCCCCeeEec
Q 007574 99 GEYHCPVLNKVFTEFTHIVAVKTTGNVFCFEAIKELNIKTKNWKELLTDEPFTKEDLITIQ 159 (597)
Q Consensus 99 ~~~~CPvt~k~ft~~t~~v~ik~~G~V~s~eai~~l~~k~k~~~~lv~~~~f~~~DII~Lq 159 (597)
..-.||||.|.--+-+ ++..+|-||||.||-....+ ..+|||++.|..=+++|-|-
T Consensus 299 ~~~~CpvClk~r~Npt---vl~vSGyVfCY~Ci~~Yv~~--~~~CPVT~~p~~v~~l~rl~ 354 (357)
T KOG0826|consen 299 DREVCPVCLKKRQNPT---VLEVSGYVFCYPCIFSYVVN--YGHCPVTGYPASVDHLIRLF 354 (357)
T ss_pred ccccChhHHhccCCCc---eEEecceEEeHHHHHHHHHh--cCCCCccCCcchHHHHHHHh
Confidence 3457999998876653 46778999999999998764 45999999998877776553
No 77
>TIGR03268 methan_mark_3 putative methanogenesis marker protein 3. A single member of this protein family is found in each of the first ten complete genome sequences of archaeal methanogens, and nowhere else. This protein family was detected by the method of partial phylogenetic profiling (see Haft, et al., 2006). The functions of proteins in this family are unknown, but their role is likely one essential to methanogenesis.
Probab=91.52 E-value=1.4 Score=49.29 Aligned_cols=116 Identities=15% Similarity=0.169 Sum_probs=71.2
Q ss_pred ceEEEEEEeCeeEEEEeCCCCChhhHHHHHHHHhccccCCceEEEeecCcEEEecCCCCCCCCCCccCCCCCCCcccccc
Q 007574 348 KGYVQLHTTHGDLNIELHCDITPRSCENFITLCERGYYNGVAFHRSIRNFMIQGGDPTGTGRGGESIWGKPFKDEVNSKL 427 (597)
Q Consensus 348 ~~~V~l~T~~G~I~IEL~~d~aP~tv~NFl~L~~~g~Y~gt~fhRvi~~f~IQgGdptg~g~gg~si~g~~f~dE~~~~l 427 (597)
....+|.|+.|.|+|+|-. ...++.-|+..++. |.|...|...++-+.. |-+. ..+.-. ..-
T Consensus 46 ~~~y~IkTtkG~i~iel~~--~~~~~~~w~e~y~~--~e~~~i~W~s~~~vAf-Gp~~-----------sdl~p~--~~~ 107 (503)
T TIGR03268 46 TKEYLIKTTKGEVVIELTP--NTEAGKFWSEIYKE--LEGKQIRWTTPQEVAF-GPFP-----------SDLEPS--REP 107 (503)
T ss_pred cceEEEEccCceEEEEecC--CchHHHHHHHHHHh--hcCCceeecchhheee-Cccc-----------CCcccc--CCc
Confidence 4557799999999999983 55566666655432 5566665554443332 2111 001100 111
Q ss_pred cCCCccEEEEecCCCCCCCcceEEeccCCC--C-CCCCCcEEEEEEcChHHHHHHhc
Q 007574 428 LHSGRGVVSMANSGPHTNGSQFFILYKSAT--H-LNYKHTVFGGVVGGLTTLAAMEK 481 (597)
Q Consensus 428 ~h~~rG~lsman~g~ntngSqFFItl~~~p--~-LD~k~tVFGrVv~G~dvL~~Ie~ 481 (597)
....++-|.+.-+|-+...+.+.|+-+... + +....-|||+||.|..+|++|..
T Consensus 108 ~~y~r~DV~lg~~G~d~~~thLIfsk~~h~~~YG~p~~~gvigrvi~Gk~vl~~L~~ 164 (503)
T TIGR03268 108 SEYERWDVILSLSGFDPDETHIIFSKKRHAAEYGVPDENGIIARVVGGKRVIDRLSD 164 (503)
T ss_pred ceeecccEEEEccCCCCCCceEEEEecchhhhhCCCCCCCEEEEEccchhhHhhccC
Confidence 223578888888886666666666655432 1 22255699999999999999865
No 78
>KOG0823 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=91.51 E-value=0.22 Score=50.38 Aligned_cols=60 Identities=10% Similarity=0.300 Sum_probs=47.6
Q ss_pred ccCcccccccccccccCceeEEEEecCcceehHHHHHHHh-hcccCccccCCCCCCCCCCeeEec
Q 007574 96 NAEGEYHCPVLNKVFTEFTHIVAVKTTGNVFCFEAIKELN-IKTKNWKELLTDEPFTKEDLITIQ 159 (597)
Q Consensus 96 n~~~~~~CPvt~k~ft~~t~~v~ik~~G~V~s~eai~~l~-~k~k~~~~lv~~~~f~~~DII~Lq 159 (597)
++.+.|-|-||...--+- ++-.|||.|||-||-+.- +....-.||||.-..+.+.+|+|-
T Consensus 43 ~~~~~FdCNICLd~akdP----VvTlCGHLFCWpClyqWl~~~~~~~~cPVCK~~Vs~~~vvPlY 103 (230)
T KOG0823|consen 43 RDGGFFDCNICLDLAKDP----VVTLCGHLFCWPCLYQWLQTRPNSKECPVCKAEVSIDTVVPLY 103 (230)
T ss_pred CCCCceeeeeeccccCCC----EEeecccceehHHHHHHHhhcCCCeeCCccccccccceEEeee
Confidence 567889999997655443 467899999999998843 344445689999999999999984
No 79
>PHA02929 N1R/p28-like protein; Provisional
Probab=91.40 E-value=0.17 Score=51.72 Aligned_cols=51 Identities=16% Similarity=0.271 Sum_probs=38.9
Q ss_pred cccccccccccccCce----eEEEEecCcceehHHHHHHHhhcccCccccCCCCCCC
Q 007574 99 GEYHCPVLNKVFTEFT----HIVAVKTTGNVFCFEAIKELNIKTKNWKELLTDEPFT 151 (597)
Q Consensus 99 ~~~~CPvt~k~ft~~t----~~v~ik~~G~V~s~eai~~l~~k~k~~~~lv~~~~f~ 151 (597)
....||||...|.+.. .+.++-+|||+|+.+||.+.... .-.||+|-.+|.
T Consensus 173 ~~~eC~ICle~~~~~~~~~~~~~vl~~C~H~FC~~CI~~Wl~~--~~tCPlCR~~~~ 227 (238)
T PHA02929 173 KDKECAICMEKVYDKEIKNMYFGILSNCNHVFCIECIDIWKKE--KNTCPVCRTPFI 227 (238)
T ss_pred CCCCCccCCcccccCccccccceecCCCCCcccHHHHHHHHhc--CCCCCCCCCEee
Confidence 4578999999876532 24567789999999999986432 347999988775
No 80
>KOG2817 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=91.31 E-value=0.13 Score=55.46 Aligned_cols=55 Identities=18% Similarity=0.254 Sum_probs=38.6
Q ss_pred ccccccccccccCceeEEEEecCcceehHHHHHHHhhccc-CccccCCCCCCCCCCe
Q 007574 100 EYHCPVLNKVFTEFTHIVAVKTTGNVFCFEAIKELNIKTK-NWKELLTDEPFTKEDL 155 (597)
Q Consensus 100 ~~~CPvt~k~ft~~t~~v~ik~~G~V~s~eai~~l~~k~k-~~~~lv~~~~f~~~DI 155 (597)
-|+|||.+..-++...=+ --.||||+|.+|+.+|..... .++||-|-..-.-+|.
T Consensus 334 vF~CPVlKeqtsdeNPPm-~L~CGHVISkdAlnrLS~ng~~sfKCPYCP~e~~~~~~ 389 (394)
T KOG2817|consen 334 VFICPVLKEQTSDENPPM-MLICGHVISKDALNRLSKNGSQSFKCPYCPVEQLASDT 389 (394)
T ss_pred eeecccchhhccCCCCCe-eeeccceecHHHHHHHhhCCCeeeeCCCCCcccCHHhc
Confidence 378999987766633222 346999999999999975432 4899999765444333
No 81
>PF13445 zf-RING_UBOX: RING-type zinc-finger; PDB: 2CT2_A.
Probab=91.25 E-value=0.22 Score=37.51 Aligned_cols=31 Identities=23% Similarity=0.389 Sum_probs=21.6
Q ss_pred ccCCCCCCCC----ceecCCCCeeeHHhHHHHHHhc
Q 007574 42 CALTFTPFED----PVCTADGSVFELMSITPYIRKY 73 (597)
Q Consensus 42 C~LSl~pl~~----PV~t~~G~ly~ke~Il~~L~k~ 73 (597)
|+|+.+ +.+ |++-+-||+|++++|..++.+.
T Consensus 1 CpIc~e-~~~~~n~P~~L~CGH~~c~~cl~~l~~~~ 35 (43)
T PF13445_consen 1 CPICKE-FSTEENPPMVLPCGHVFCKDCLQKLSKKS 35 (43)
T ss_dssp -TTT-----TTSS-EEE-SSS-EEEHHHHHHHHHH-
T ss_pred CCcccc-ccCCCCCCEEEeCccHHHHHHHHHHHhcC
Confidence 899999 888 9998899999999999999854
No 82
>COG4070 Predicted peptidyl-prolyl cis-trans isomerase (rotamase), cyclophilin family [Posttranslational modification, protein turnover, chaperones]
Probab=90.91 E-value=0.71 Score=49.97 Aligned_cols=22 Identities=36% Similarity=0.302 Sum_probs=20.7
Q ss_pred eEEEEeCCCCChhhHHHHHHHH
Q 007574 359 DLNIELHCDITPRSCENFITLC 380 (597)
Q Consensus 359 ~I~IEL~~d~aP~tv~NFl~L~ 380 (597)
-|.||||.+.||++++.|+++.
T Consensus 377 iieIELyed~APrSv~yFRr~t 398 (512)
T COG4070 377 IIEIELYEDRAPRSVWYFRRST 398 (512)
T ss_pred EEEEEecCCCCchhhHHHHhhc
Confidence 5999999999999999999986
No 83
>COG5109 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=90.57 E-value=0.14 Score=53.65 Aligned_cols=56 Identities=23% Similarity=0.328 Sum_probs=42.1
Q ss_pred cccccccccccCceeEEEEecCcceehHHHHHHHhhcc-cCccccCCCCCCCCCCeeE
Q 007574 101 YHCPVLNKVFTEFTHIVAVKTTGNVFCFEAIKELNIKT-KNWKELLTDEPFTKEDLIT 157 (597)
Q Consensus 101 ~~CPvt~k~ft~~t~~v~ik~~G~V~s~eai~~l~~k~-k~~~~lv~~~~f~~~DII~ 157 (597)
|+|||.+..-++-..= +.-.||||++.+|+.+|.... -.++||-|-+.-.-+|+|.
T Consensus 337 FiCPVlKe~~t~ENpP-~ml~CgHVIskeal~~LS~nG~~~FKCPYCP~~~~~~~~~r 393 (396)
T COG5109 337 FICPVLKELCTDENPP-VMLECGHVISKEALSVLSQNGVLSFKCPYCPEMSKYENILR 393 (396)
T ss_pred eeccccHhhhcccCCC-eeeeccceeeHHHHHHHhhcCcEEeeCCCCCcchhhhhhhc
Confidence 8999998777664332 345799999999999997653 2578999987666666654
No 84
>PF04641 Rtf2: Rtf2 RING-finger
Probab=90.33 E-value=0.29 Score=50.65 Aligned_cols=58 Identities=24% Similarity=0.418 Sum_probs=42.0
Q ss_pred CCccccCCCCCCC--Ccee--cCCCCeeeHHhHHHHHHhcCCCCCCCCCCCCCCccccccccccCcccccccccccccCc
Q 007574 38 PFYCCALTFTPFE--DPVC--TADGSVFELMSITPYIRKYGKHPVTGTPLKLEDLIPLTFHKNAEGEYHCPVLNKVFTEF 113 (597)
Q Consensus 38 pf~~C~LSl~pl~--~PV~--t~~G~ly~ke~Il~~L~k~~~~Pvtg~~l~lkdLi~l~f~kn~~~~~~CPvt~k~ft~~ 113 (597)
.-++||||...|. .++| -+.|++|..++|-+. .+. +.||+|.+.|+ .
T Consensus 112 ~~~~CPvt~~~~~~~~~fv~l~~cG~V~s~~alke~-k~~---------------------------~~Cp~c~~~f~-~ 162 (260)
T PF04641_consen 112 GRFICPVTGKEFNGKHKFVYLRPCGCVFSEKALKEL-KKS---------------------------KKCPVCGKPFT-E 162 (260)
T ss_pred ceeECCCCCcccCCceeEEEEcCCCCEeeHHHHHhh-ccc---------------------------ccccccCCccc-c
Confidence 4558999999995 3554 577999999998776 111 12888888887 5
Q ss_pred eeEEEEecCcc
Q 007574 114 THIVAVKTTGN 124 (597)
Q Consensus 114 t~~v~ik~~G~ 124 (597)
.-||.|-+++.
T Consensus 163 ~DiI~Lnp~~e 173 (260)
T PF04641_consen 163 EDIIPLNPPEE 173 (260)
T ss_pred CCEEEecCCcc
Confidence 56777777776
No 85
>PF00097 zf-C3HC4: Zinc finger, C3HC4 type (RING finger); InterPro: IPR018957 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C3HC4 type zinc-finger (RING finger) is a cysteine-rich domain of 40 to 60 residues that coordinates two zinc ions, and has the consensus sequence: C-X2-C-X(9-39)-C-X(1-3)-H-X(2-3)-C-X2-C-X(4-48)-C-X2-C where X is any amino acid []. Many proteins containing a RING finger play a key role in the ubiquitination pathway []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 1CHC_A 2ECW_A 2Y43_B 1V87_A 2DJB_A 2H0D_B 3RPG_C 3KNV_A 2CKL_B 1JM7_A ....
Probab=89.40 E-value=0.52 Score=34.26 Aligned_cols=31 Identities=29% Similarity=0.630 Sum_probs=29.0
Q ss_pred ccCCCCCCCCce-ecCCCCeeeHHhHHHHHHh
Q 007574 42 CALTFTPFEDPV-CTADGSVFELMSITPYIRK 72 (597)
Q Consensus 42 C~LSl~pl~~PV-~t~~G~ly~ke~Il~~L~k 72 (597)
|+|.++++.+|+ ..+=||.|....|..|+..
T Consensus 1 C~iC~~~~~~~~~~~~C~H~fC~~C~~~~~~~ 32 (41)
T PF00097_consen 1 CPICLEPFEDPVILLPCGHSFCRDCLRKWLEN 32 (41)
T ss_dssp ETTTSSBCSSEEEETTTSEEEEHHHHHHHHHH
T ss_pred CCcCCccccCCCEEecCCCcchHHHHHHHHHh
Confidence 899999999999 7788999999999999985
No 86
>smart00184 RING Ring finger. E3 ubiquitin-protein ligase activity is intrinsic to the RING domain of c-Cbl and is likely to be a general function of this domain; Various RING fingers exhibit binding activity towards E2 ubiquitin-conjugating enzymes (Ubc' s)
Probab=88.81 E-value=0.39 Score=33.17 Aligned_cols=39 Identities=21% Similarity=0.327 Sum_probs=26.9
Q ss_pred cccccccccCceeEEEEecCcceehHHHHHHHhhcccCccccCC
Q 007574 103 CPVLNKVFTEFTHIVAVKTTGNVFCFEAIKELNIKTKNWKELLT 146 (597)
Q Consensus 103 CPvt~k~ft~~t~~v~ik~~G~V~s~eai~~l~~k~k~~~~lv~ 146 (597)
|||+..... ...+.+|||+|.+.+++++.. ....+||+|
T Consensus 1 C~iC~~~~~----~~~~~~C~H~~c~~C~~~~~~-~~~~~CP~C 39 (39)
T smart00184 1 CPICLEELK----DPVVLPCGHTFCRSCIRKWLK-SGNNTCPIC 39 (39)
T ss_pred CCcCccCCC----CcEEecCCChHHHHHHHHHHH-hCcCCCCCC
Confidence 677766632 244568999999999998754 234567765
No 87
>KOG3800 consensus Predicted E3 ubiquitin ligase containing RING finger, subunit of transcription/repair factor TFIIH and CDK-activating kinase assembly factor [Posttranslational modification, protein turnover, chaperones]
Probab=87.59 E-value=0.41 Score=49.87 Aligned_cols=59 Identities=10% Similarity=0.244 Sum_probs=43.1
Q ss_pred cccccc--ccccCceeEEEEecCcceehHHHHHHHhhcccCccccCCCCCCCCCCeeE--ecCCC
Q 007574 102 HCPVLN--KVFTEFTHIVAVKTTGNVFCFEAIKELNIKTKNWKELLTDEPFTKEDLIT--IQNPN 162 (597)
Q Consensus 102 ~CPvt~--k~ft~~t~~v~ik~~G~V~s~eai~~l~~k~k~~~~lv~~~~f~~~DII~--Lqdp~ 162 (597)
.||+|+ +-|+....+ +|.+|||-+|++|+..+ ..-+...||.|++.+.+..+.+ +.||.
T Consensus 2 ~Cp~CKt~~Y~np~lk~-~in~C~H~lCEsCvd~i-F~~g~~~CpeC~~iLRk~nfr~q~fED~~ 64 (300)
T KOG3800|consen 2 ACPKCKTDRYLNPDLKL-MINECGHRLCESCVDRI-FSLGPAQCPECMVILRKNNFRVQTFEDPT 64 (300)
T ss_pred CCcccccceecCcccee-eeccccchHHHHHHHHH-HhcCCCCCCcccchhhhcccchhhcchhH
Confidence 499987 445555444 46699999999999997 3445678999999887766653 35554
No 88
>PF13920 zf-C3HC4_3: Zinc finger, C3HC4 type (RING finger); PDB: 2YHN_B 2YHO_G 3T6P_A 2CSY_A 2VJE_B 2VJF_B 2HDP_B 2EA5_A 2ECG_A 3EB5_A ....
Probab=87.54 E-value=0.8 Score=35.04 Aligned_cols=44 Identities=20% Similarity=0.333 Sum_probs=36.7
Q ss_pred ccccCCCCCCCCceecCCCCe-eeHHhHHHHHHhcCCCCCCCCCC
Q 007574 40 YCCALTFTPFEDPVCTADGSV-FELMSITPYIRKYGKHPVTGTPL 83 (597)
Q Consensus 40 ~~C~LSl~pl~~PV~t~~G~l-y~ke~Il~~L~k~~~~Pvtg~~l 83 (597)
..|.|+++...++++.+=||+ |+.+.+..|+......|+=+.++
T Consensus 3 ~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~~~~~~~CP~Cr~~i 47 (50)
T PF13920_consen 3 EECPICFENPRDVVLLPCGHLCFCEECAERLLKRKKKCPICRQPI 47 (50)
T ss_dssp SB-TTTSSSBSSEEEETTCEEEEEHHHHHHHHHTTSBBTTTTBB-
T ss_pred CCCccCCccCCceEEeCCCChHHHHHHhHHhcccCCCCCcCChhh
Confidence 369999999999999999999 99999999999777777766554
No 89
>KOG2879 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=87.49 E-value=0.41 Score=49.51 Aligned_cols=50 Identities=18% Similarity=0.352 Sum_probs=37.7
Q ss_pred cccccccccccccCceeEEEEecCcceehHHHHHHHhhcccCccccCCCCCCC
Q 007574 99 GEYHCPVLNKVFTEFTHIVAVKTTGNVFCFEAIKELNIKTKNWKELLTDEPFT 151 (597)
Q Consensus 99 ~~~~CPvt~k~ft~~t~~v~ik~~G~V~s~eai~~l~~k~k~~~~lv~~~~f~ 151 (597)
..-.||+|++.=+.-. .+-+|||+|||-|+..-..-+-.+.||.|+++..
T Consensus 238 ~~~~C~~Cg~~PtiP~---~~~~C~HiyCY~Ci~ts~~~~asf~Cp~Cg~~~~ 287 (298)
T KOG2879|consen 238 SDTECPVCGEPPTIPH---VIGKCGHIYCYYCIATSRLWDASFTCPLCGENVE 287 (298)
T ss_pred CCceeeccCCCCCCCe---eeccccceeehhhhhhhhcchhhcccCccCCCCc
Confidence 4568999998766432 2568999999999987544455688999998654
No 90
>PF02891 zf-MIZ: MIZ/SP-RING zinc finger; InterPro: IPR004181 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents MIZ-type zinc finger domains. Miz1 (Msx-interacting-zinc finger) is a zinc finger-containing protein with homology to the yeast protein, Nfi-1. Miz1 is a sequence specific DNA binding protein that can function as a positive-acting transcription factor. Miz1 binds to the homeobox protein Msx2, enhancing the specific DNA-binding ability of Msx2 []. Other proteins containing this domain include the human pias family (protein inhibitor of activated STAT protein). More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 3I2D_A.
Probab=87.06 E-value=0.39 Score=37.32 Aligned_cols=46 Identities=24% Similarity=0.408 Sum_probs=25.6
Q ss_pred cccccccccccCceeEEEEecCcce--ehHHHHHHHhhcccCccccCCCCC
Q 007574 101 YHCPVLNKVFTEFTHIVAVKTTGNV--FCFEAIKELNIKTKNWKELLTDEP 149 (597)
Q Consensus 101 ~~CPvt~k~ft~~t~~v~ik~~G~V--~s~eai~~l~~k~k~~~~lv~~~~ 149 (597)
..||+++..+.--.+ -+.|-|+ |..+.+=+++.....|+||+|+++
T Consensus 3 L~CPls~~~i~~P~R---g~~C~H~~CFDl~~fl~~~~~~~~W~CPiC~~~ 50 (50)
T PF02891_consen 3 LRCPLSFQRIRIPVR---GKNCKHLQCFDLESFLESNQRTPKWKCPICNKP 50 (50)
T ss_dssp SB-TTTSSB-SSEEE---ETT--SS--EEHHHHHHHHHHS---B-TTT---
T ss_pred eeCCCCCCEEEeCcc---CCcCcccceECHHHHHHHhhccCCeECcCCcCc
Confidence 579999999875422 3346665 777777777777778999999875
No 91
>PHA02926 zinc finger-like protein; Provisional
Probab=86.15 E-value=0.58 Score=47.24 Aligned_cols=54 Identities=13% Similarity=0.212 Sum_probs=40.4
Q ss_pred Cccccccccccccc-----CceeEEEEecCcceehHHHHHHHhhccc----CccccCCCCCCC
Q 007574 98 EGEYHCPVLNKVFT-----EFTHIVAVKTTGNVFCFEAIKELNIKTK----NWKELLTDEPFT 151 (597)
Q Consensus 98 ~~~~~CPvt~k~ft-----~~t~~v~ik~~G~V~s~eai~~l~~k~k----~~~~lv~~~~f~ 151 (597)
..+..|+||..... +...+-.+.+|+|+||..||.+-..... ...||+|-..|+
T Consensus 168 SkE~eCgICmE~I~eK~~~~eRrFGIL~~CnHsFCl~CIr~Wr~~r~~~~~~rsCPiCR~~f~ 230 (242)
T PHA02926 168 SKEKECGICYEVVYSKRLENDRYFGLLDSCNHIFCITCINIWHRTRRETGASDNCPICRTRFR 230 (242)
T ss_pred cCCCCCccCccccccccccccccccccCCCCchHHHHHHHHHHHhccccCcCCcCCCCcceee
Confidence 34678999997653 2345677899999999999998764321 234999999886
No 92
>KOG2042 consensus Ubiquitin fusion degradation protein-2 [Posttranslational modification, protein turnover, chaperones]
Probab=86.14 E-value=0.35 Score=57.80 Aligned_cols=66 Identities=17% Similarity=0.099 Sum_probs=59.2
Q ss_pred CCccccCCCCCCCCceecC-CCCeeeHHhHHHHHHhcCCCCCCCCCCCCCCccccccccccCccccc
Q 007574 38 PFYCCALTFTPFEDPVCTA-DGSVFELMSITPYIRKYGKHPVTGTPLKLEDLIPLTFHKNAEGEYHC 103 (597)
Q Consensus 38 pf~~C~LSl~pl~~PV~t~-~G~ly~ke~Il~~L~k~~~~Pvtg~~l~lkdLi~l~f~kn~~~~~~C 103 (597)
+++--||...++.|||+-| .|.+-|+..|..||....+||+++.||++++|++.--.+..+..|.|
T Consensus 869 def~DPlm~Tlm~dPV~LP~Srv~vDRsti~rhlLs~~tdPFNR~pLt~d~v~pn~eLK~kI~~~~~ 935 (943)
T KOG2042|consen 869 DEFLDPLMSTLMSDPVVLPSSRVTVDRSTIERHLLSDCTDPFNREPLTEDMVSPNEELKAKIRCWIK 935 (943)
T ss_pred hhhhCccccccCCCCccCCcccccccHHHHHHHHhcCCCCccccccCchhhcCCCHHHHHHHHHHHH
Confidence 4667899999999999998 79999999999999999999999999999999998887776666654
No 93
>COG5113 UFD2 Ubiquitin fusion degradation protein 2 [Posttranslational modification, protein turnover, chaperones]
Probab=84.87 E-value=0.44 Score=54.22 Aligned_cols=68 Identities=22% Similarity=0.364 Sum_probs=58.5
Q ss_pred CCCCC-CccccCCCCCCCCceecCC-CCeeeHHhHHHHHHhcCCCCCCCCCCCCCCccccccccccCccc
Q 007574 34 FKRLP-FYCCALTFTPFEDPVCTAD-GSVFELMSITPYIRKYGKHPVTGTPLKLEDLIPLTFHKNAEGEY 101 (597)
Q Consensus 34 ~~~lp-f~~C~LSl~pl~~PV~t~~-G~ly~ke~Il~~L~k~~~~Pvtg~~l~lkdLi~l~f~kn~~~~~ 101 (597)
+--+| .+--||...+|+|||+-|. |..-|+..|-.+|...++||.++-||++.|++|.--.+..+..|
T Consensus 848 ~GDvPDeFlDPLmftimkdPV~Lp~S~i~IDRSTikahllsd~tDPFNRmPLtlddVtpn~eLrekIn~f 917 (929)
T COG5113 848 MGDVPDEFLDPLMFTIMKDPVKLPTSRITIDRSTIKAHLLSDGTDPFNRMPLTLDDVTPNAELREKINRF 917 (929)
T ss_pred ccCCchhhhCchhhhcccCCeecccccccccHHHHHHHHhcCCCCccccCCCchhhcCCCHHHHHHHHHH
Confidence 33344 7779999999999999765 99999999999999999999999999999999988777655544
No 94
>smart00184 RING Ring finger. E3 ubiquitin-protein ligase activity is intrinsic to the RING domain of c-Cbl and is likely to be a general function of this domain; Various RING fingers exhibit binding activity towards E2 ubiquitin-conjugating enzymes (Ubc' s)
Probab=84.65 E-value=1.1 Score=30.82 Aligned_cols=30 Identities=23% Similarity=0.555 Sum_probs=28.0
Q ss_pred ccCCCCCCCCceecCCCCeeeHHhHHHHHH
Q 007574 42 CALTFTPFEDPVCTADGSVFELMSITPYIR 71 (597)
Q Consensus 42 C~LSl~pl~~PV~t~~G~ly~ke~Il~~L~ 71 (597)
|+|+++....|+..+-||+|....|..|+.
T Consensus 1 C~iC~~~~~~~~~~~C~H~~c~~C~~~~~~ 30 (39)
T smart00184 1 CPICLEELKDPVVLPCGHTFCRSCIRKWLK 30 (39)
T ss_pred CCcCccCCCCcEEecCCChHHHHHHHHHHH
Confidence 788888889999999999999999999997
No 95
>KOG2177 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=84.40 E-value=0.5 Score=47.37 Aligned_cols=45 Identities=18% Similarity=0.275 Sum_probs=38.6
Q ss_pred CcccccccccccccCceeEEEEecCcceehHHHHHHHhhcccCccccCCCC
Q 007574 98 EGEYHCPVLNKVFTEFTHIVAVKTTGNVFCFEAIKELNIKTKNWKELLTDE 148 (597)
Q Consensus 98 ~~~~~CPvt~k~ft~~t~~v~ik~~G~V~s~eai~~l~~k~k~~~~lv~~~ 148 (597)
..++.||||...|..- .+-+|||.||..|+..+.. ....||+|..
T Consensus 11 ~~~~~C~iC~~~~~~p----~~l~C~H~~c~~C~~~~~~--~~~~Cp~cr~ 55 (386)
T KOG2177|consen 11 QEELTCPICLEYFREP----VLLPCGHNFCRACLTRSWE--GPLSCPVCRP 55 (386)
T ss_pred cccccChhhHHHhhcC----ccccccchHhHHHHHHhcC--CCcCCcccCC
Confidence 5678999999999977 6789999999999999754 4578999983
No 96
>PF02891 zf-MIZ: MIZ/SP-RING zinc finger; InterPro: IPR004181 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents MIZ-type zinc finger domains. Miz1 (Msx-interacting-zinc finger) is a zinc finger-containing protein with homology to the yeast protein, Nfi-1. Miz1 is a sequence specific DNA binding protein that can function as a positive-acting transcription factor. Miz1 binds to the homeobox protein Msx2, enhancing the specific DNA-binding ability of Msx2 []. Other proteins containing this domain include the human pias family (protein inhibitor of activated STAT protein). More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 3I2D_A.
Probab=84.04 E-value=1.4 Score=34.28 Aligned_cols=33 Identities=24% Similarity=0.335 Sum_probs=23.2
Q ss_pred cccCCCCCCCCceecC---CCCeeeHHhHHHHHHhc
Q 007574 41 CCALTFTPFEDPVCTA---DGSVFELMSITPYIRKY 73 (597)
Q Consensus 41 ~C~LSl~pl~~PV~t~---~G~ly~ke~Il~~L~k~ 73 (597)
.|+||.+++..||=.. --.-||.++.|.+-...
T Consensus 4 ~CPls~~~i~~P~Rg~~C~H~~CFDl~~fl~~~~~~ 39 (50)
T PF02891_consen 4 RCPLSFQRIRIPVRGKNCKHLQCFDLESFLESNQRT 39 (50)
T ss_dssp B-TTTSSB-SSEEEETT--SS--EEHHHHHHHHHHS
T ss_pred eCCCCCCEEEeCccCCcCcccceECHHHHHHHhhcc
Confidence 5999999999999633 24469999999887753
No 97
>cd00162 RING RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in mediating protein-protein interactions; identified in a proteins with a wide range of functions such as viral replication, signal transduction, and development; has two variants, the C3HC4-type and a C3H2C3-type (RING-H2 finger), which have different cysteine/histidine pattern; a subset of RINGs are associated with B-Boxes (C-X2-H-X7-C-X7-C-X2-C-H-X2-H)
Probab=82.88 E-value=1.7 Score=31.03 Aligned_cols=38 Identities=24% Similarity=0.508 Sum_probs=30.2
Q ss_pred cccCCCCCCCCceecC-CCCeeeHHhHHHHHHh-cCCCCC
Q 007574 41 CCALTFTPFEDPVCTA-DGSVFELMSITPYIRK-YGKHPV 78 (597)
Q Consensus 41 ~C~LSl~pl~~PV~t~-~G~ly~ke~Il~~L~k-~~~~Pv 78 (597)
.|+|+++.+.+|+... -||.|....+..|+.. ....|+
T Consensus 1 ~C~iC~~~~~~~~~~~~C~H~~c~~C~~~~~~~~~~~Cp~ 40 (45)
T cd00162 1 ECPICLEEFREPVVLLPCGHVFCRSCIDKWLKSGKNTCPL 40 (45)
T ss_pred CCCcCchhhhCceEecCCCChhcHHHHHHHHHhCcCCCCC
Confidence 3889999998888755 7999999999999986 333443
No 98
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=82.88 E-value=0.99 Score=49.49 Aligned_cols=57 Identities=28% Similarity=0.437 Sum_probs=45.6
Q ss_pred cccccccccccCceeEEEEecCcceehHHHHHHHhhcccCccccCCCCCCCCCCeeEecCCC
Q 007574 101 YHCPVLNKVFTEFTHIVAVKTTGNVFCFEAIKELNIKTKNWKELLTDEPFTKEDLITIQNPN 162 (597)
Q Consensus 101 ~~CPvt~k~ft~~t~~v~ik~~G~V~s~eai~~l~~k~k~~~~lv~~~~f~~~DII~Lqdp~ 162 (597)
+.|.|++++=-.- |+-..+||||-..-|+++... +.+||++++|++.+|||.|--|.
T Consensus 1 m~CaISgEvP~~P---VvS~~Sg~vfEkrLIEqyI~e--~G~DPIt~~pLs~eelV~Ik~~~ 57 (506)
T KOG0289|consen 1 MVCAISGEVPEEP---VVSPVSGHVFEKRLIEQYIAE--TGKDPITNEPLSIEELVEIKVPA 57 (506)
T ss_pred CeecccCCCCCCc---cccccccchHHHHHHHHHHHH--cCCCCCCCCcCCHHHeeeccccc
Confidence 3688888775433 556669999999999998654 45899999999999999996553
No 99
>PF06416 DUF1076: Protein of unknown function (DUF1076); InterPro: IPR010489 This entry is represented by Bacteriophage 2851, Orf74 (EP2851_74). The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.; PDB: 2KKX_A 2KKY_A.
Probab=82.32 E-value=1.3 Score=40.11 Aligned_cols=52 Identities=17% Similarity=0.393 Sum_probs=32.8
Q ss_pred CccccCCCCCCCCceecC--C----CCeeeHHhHHHHHHhcCCCCCCCCCCCCCCccc
Q 007574 39 FYCCALTFTPFEDPVCTA--D----GSVFELMSITPYIRKYGKHPVTGTPLKLEDLIP 90 (597)
Q Consensus 39 f~~C~LSl~pl~~PV~t~--~----G~ly~ke~Il~~L~k~~~~Pvtg~~l~lkdLi~ 90 (597)
+-.|||+|..-+.-|.-. . =.|||++++.+-+.....+|++++|++...+|.
T Consensus 40 ~L~CPITL~iPe~GVFvkNs~~S~VC~LyD~~Al~~Lv~~~~~HPLSREpit~sMIv~ 97 (113)
T PF06416_consen 40 HLTCPITLCIPENGVFVKNSSGSDVCSLYDKEALSRLVREGAPHPLSREPITPSMIVS 97 (113)
T ss_dssp HH-BTTTTC--SCEEEEECTTTSSEEEEEEHHHHHHHHHCT---TTT-----TTTEE-
T ss_pred HcCCCeEEeecCCceEEecCCCCccceecCHHHHHHHHHcCCCCCCccCCCChhhEec
Confidence 456999999988776511 1 369999999999999999999999999888764
No 100
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=81.83 E-value=0.71 Score=53.70 Aligned_cols=55 Identities=20% Similarity=0.304 Sum_probs=48.8
Q ss_pred CccccCCCCCCCCceecCCCCeeeHHhHHHHHH-hcCCCCCCCCCCCCCCcccccc
Q 007574 39 FYCCALTFTPFEDPVCTADGSVFELMSITPYIR-KYGKHPVTGTPLKLEDLIPLTF 93 (597)
Q Consensus 39 f~~C~LSl~pl~~PV~t~~G~ly~ke~Il~~L~-k~~~~Pvtg~~l~lkdLi~l~f 93 (597)
--.|++|..-+++-|++..||+||-+||-..+. .+.++|..+......|+.+++.
T Consensus 643 ~LkCs~Cn~R~Kd~vI~kC~H~FC~~Cvq~r~etRqRKCP~Cn~aFganDv~~I~l 698 (698)
T KOG0978|consen 643 LLKCSVCNTRWKDAVITKCGHVFCEECVQTRYETRQRKCPKCNAAFGANDVHRIHL 698 (698)
T ss_pred ceeCCCccCchhhHHHHhcchHHHHHHHHHHHHHhcCCCCCCCCCCCcccccccCC
Confidence 346999999999999999999999999999996 4567999999999999988863
No 101
>PF14447 Prok-RING_4: Prokaryotic RING finger family 4
Probab=81.35 E-value=0.65 Score=36.87 Aligned_cols=33 Identities=18% Similarity=0.238 Sum_probs=26.7
Q ss_pred EecCcceehHHHHHHHhhcccCccccCCCCCCCCCCe
Q 007574 119 VKTTGNVFCFEAIKELNIKTKNWKELLTDEPFTKEDL 155 (597)
Q Consensus 119 ik~~G~V~s~eai~~l~~k~k~~~~lv~~~~f~~~DI 155 (597)
+.+|||+++..|+.--. ---||.|+.+|...|+
T Consensus 22 ~~pCgH~I~~~~f~~~r----YngCPfC~~~~~~~~~ 54 (55)
T PF14447_consen 22 VLPCGHLICDNCFPGER----YNGCPFCGTPFEFDDP 54 (55)
T ss_pred cccccceeeccccChhh----ccCCCCCCCcccCCCC
Confidence 57999999999986522 2369999999998775
No 102
>KOG2177 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=80.76 E-value=0.59 Score=46.88 Aligned_cols=34 Identities=21% Similarity=0.295 Sum_probs=31.3
Q ss_pred CCccccCCCCCCCCceecCCCCeeeHHhHHHHHH
Q 007574 38 PFYCCALTFTPFEDPVCTADGSVFELMSITPYIR 71 (597)
Q Consensus 38 pf~~C~LSl~pl~~PV~t~~G~ly~ke~Il~~L~ 71 (597)
....|+||++.|.+|++.+.||.||+.+|..++.
T Consensus 12 ~~~~C~iC~~~~~~p~~l~C~H~~c~~C~~~~~~ 45 (386)
T KOG2177|consen 12 EELTCPICLEYFREPVLLPCGHNFCRACLTRSWE 45 (386)
T ss_pred ccccChhhHHHhhcCccccccchHhHHHHHHhcC
Confidence 4667999999999998899999999999999987
No 103
>KOG2979 consensus Protein involved in DNA repair [General function prediction only]
Probab=79.45 E-value=1.1 Score=46.16 Aligned_cols=56 Identities=16% Similarity=0.124 Sum_probs=43.1
Q ss_pred ccccccccccccCceeEEEEecCcceehHHHHHHHhhcccCccccCCCCCCCCCCeeEecCCC
Q 007574 100 EYHCPVLNKVFTEFTHIVAVKTTGNVFCFEAIKELNIKTKNWKELLTDEPFTKEDLITIQNPN 162 (597)
Q Consensus 100 ~~~CPvt~k~ft~~t~~v~ik~~G~V~s~eai~~l~~k~k~~~~lv~~~~f~~~DII~Lqdp~ 162 (597)
...||++++.+-+- |.-+.|||||..+.|.++.-.....+||+-+-+ |...+|+-+
T Consensus 176 s~rdPis~~~I~nP---viSkkC~HvydrDsI~~~l~~~~~i~CPv~gC~----~~~~~~~~~ 231 (262)
T KOG2979|consen 176 SNRDPISKKPIVNP---VISKKCGHVYDRDSIMQILCDEITIRCPVLGCE----NPYYIQPGH 231 (262)
T ss_pred cccCchhhhhhhch---hhhcCcCcchhhhhHHHHhccCceeecccccCC----ccccccccc
Confidence 36799998887654 567899999999999997655566889987764 666666544
No 104
>KOG1002 consensus Nucleotide excision repair protein RAD16 [Replication, recombination and repair]
Probab=77.90 E-value=0.86 Score=50.93 Aligned_cols=49 Identities=24% Similarity=0.447 Sum_probs=42.0
Q ss_pred cccCCCCCCCCceecCCCCeeeHHhHHHHHHhcCCCCCCCCCCCCCCccccccccccCccccccccccccc
Q 007574 41 CCALTFTPFEDPVCTADGSVFELMSITPYIRKYGKHPVTGTPLKLEDLIPLTFHKNAEGEYHCPVLNKVFT 111 (597)
Q Consensus 41 ~C~LSl~pl~~PV~t~~G~ly~ke~Il~~L~k~~~~Pvtg~~l~lkdLi~l~f~kn~~~~~~CPvt~k~ft 111 (597)
-|-||..|.++||.+..-|.||+.||-+|+...+. + .+ ..||+|++.++
T Consensus 538 ~C~lc~d~aed~i~s~ChH~FCrlCi~eyv~~f~~--------------------~-~n-vtCP~C~i~Ls 586 (791)
T KOG1002|consen 538 ECGLCHDPAEDYIESSCHHKFCRLCIKEYVESFME--------------------N-NN-VTCPVCHIGLS 586 (791)
T ss_pred eecccCChhhhhHhhhhhHHHHHHHHHHHHHhhhc--------------------c-cC-CCCcccccccc
Confidence 49999999999999999999999999999986532 1 22 78999998887
No 105
>KOG1813 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=77.71 E-value=1.5 Score=45.87 Aligned_cols=45 Identities=29% Similarity=0.277 Sum_probs=36.7
Q ss_pred CCCCccccCCCCCCCCceecCCCCeeeHHhHHHHHHhcCCCCCCCC
Q 007574 36 RLPFYCCALTFTPFEDPVCTADGSVFELMSITPYIRKYGKHPVTGT 81 (597)
Q Consensus 36 ~lpf~~C~LSl~pl~~PV~t~~G~ly~ke~Il~~L~k~~~~Pvtg~ 81 (597)
.+||. |-||-++|.+||++..||.||..|.+..+++...+++.++
T Consensus 239 ~~Pf~-c~icr~~f~~pVvt~c~h~fc~~ca~~~~qk~~~c~vC~~ 283 (313)
T KOG1813|consen 239 LLPFK-CFICRKYFYRPVVTKCGHYFCEVCALKPYQKGEKCYVCSQ 283 (313)
T ss_pred cCCcc-ccccccccccchhhcCCceeehhhhccccccCCcceeccc
Confidence 35654 7899999999999999999999999988877666655543
No 106
>KOG0827 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=77.44 E-value=1.7 Score=47.12 Aligned_cols=74 Identities=16% Similarity=0.095 Sum_probs=47.7
Q ss_pred ccccccccccccCcee-EEEEecCcceehHHHHHHHh-hcccCccccCCCCCCCCCCeeEecCCCCcchhccchhhhhhc
Q 007574 100 EYHCPVLNKVFTEFTH-IVAVKTTGNVFCFEAIKELN-IKTKNWKELLTDEPFTKEDLITIQNPNALDTKVTLEFDHVKK 177 (597)
Q Consensus 100 ~~~CPvt~k~ft~~t~-~v~ik~~G~V~s~eai~~l~-~k~k~~~~lv~~~~f~~~DII~Lqdp~~~~~~~~~~f~h~k~ 177 (597)
.-+|-|| ..|-++.| +-.|.+|||||-.-|+.+.- -.+.+--||+|. ||+|...-- |-+.|+||.+
T Consensus 4 ~A~C~Ic-~d~~p~~~~l~~i~~cGhifh~~cl~qwfe~~Ps~R~cpic~----------ik~~~r~~~-N~~~~d~vvE 71 (465)
T KOG0827|consen 4 MAECHIC-IDGRPNDHELGPIGTCGHIFHTTCLTQWFEGDPSNRGCPICQ----------IKLQERHVA-NPSTVDHVVE 71 (465)
T ss_pred cceeeEe-ccCCccccccccccchhhHHHHHHHHHHHccCCccCCCCcee----------ecccceeee-chhhhhhhhc
Confidence 3578899 44555555 45678899999999998852 223333699996 444433222 4567889887
Q ss_pred CCccChHH
Q 007574 178 GLKVDDEE 185 (597)
Q Consensus 178 ~~~~~~~~ 185 (597)
..-+.+-+
T Consensus 72 e~~Vld~~ 79 (465)
T KOG0827|consen 72 ESVVLDWD 79 (465)
T ss_pred cchhhhHH
Confidence 65555433
No 107
>COG5432 RAD18 RING-finger-containing E3 ubiquitin ligase [Signal transduction mechanisms]
Probab=76.49 E-value=1.4 Score=45.88 Aligned_cols=48 Identities=21% Similarity=0.220 Sum_probs=39.6
Q ss_pred CCCCC-CccccCCCCCCCCceecCCCCeeeHHhHHHHHHhcCCCCCCCC
Q 007574 34 FKRLP-FYCCALTFTPFEDPVCTADGSVFELMSITPYIRKYGKHPVTGT 81 (597)
Q Consensus 34 ~~~lp-f~~C~LSl~pl~~PV~t~~G~ly~ke~Il~~L~k~~~~Pvtg~ 81 (597)
+..|+ ...|.||..-|.-|+.|+-||.||--||-.||..+.-+|+..+
T Consensus 19 L~~LDs~lrC~IC~~~i~ip~~TtCgHtFCslCIR~hL~~qp~CP~Cr~ 67 (391)
T COG5432 19 LKGLDSMLRCRICDCRISIPCETTCGHTFCSLCIRRHLGTQPFCPVCRE 67 (391)
T ss_pred hhcchhHHHhhhhhheeecceecccccchhHHHHHHHhcCCCCCccccc
Confidence 33344 4579999999999999999999999999999987766666543
No 108
>COG5222 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=75.51 E-value=1.7 Score=45.58 Aligned_cols=48 Identities=19% Similarity=0.389 Sum_probs=36.7
Q ss_pred cccccccccccCceeEEEEecCcceehHHHHHHHhhcccCccccCCCCCCCCCCee
Q 007574 101 YHCPVLNKVFTEFTHIVAVKTTGNVFCFEAIKELNIKTKNWKELLTDEPFTKEDLI 156 (597)
Q Consensus 101 ~~CPvt~k~ft~~t~~v~ik~~G~V~s~eai~~l~~k~k~~~~lv~~~~f~~~DII 156 (597)
+-||.|+..+.+-.+- .-||+.||.+||....+ ...++|++|.. +||+
T Consensus 275 LkCplc~~Llrnp~kT---~cC~~~fc~eci~~al~-dsDf~CpnC~r----kdvl 322 (427)
T COG5222 275 LKCPLCHCLLRNPMKT---PCCGHTFCDECIGTALL-DSDFKCPNCSR----KDVL 322 (427)
T ss_pred ccCcchhhhhhCcccC---ccccchHHHHHHhhhhh-hccccCCCccc----ccch
Confidence 6799999999875332 45999999999986433 34589999964 7776
No 109
>PF12678 zf-rbx1: RING-H2 zinc finger; InterPro: IPR024766 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This domain constitutes a conserved region found in proteins that participate in diverse functions relevant to chromosome metabolism and cell cycle control [].The domain contains 8 cysteine/ histidine residues which are proposed to be the conserved residues involved in zinc binding.; PDB: 4A0C_D 4A0L_I 4A0K_B 2ECL_A 1LDK_C 3RTR_F 3DQV_Y 1U6G_B 1LDJ_B 2HYE_D ....
Probab=75.43 E-value=4.2 Score=33.94 Aligned_cols=41 Identities=24% Similarity=0.570 Sum_probs=31.6
Q ss_pred CCccccCCCCCCCCc------------ee-cCCCCeeeHHhHHHHHHhcCCCCC
Q 007574 38 PFYCCALTFTPFEDP------------VC-TADGSVFELMSITPYIRKYGKHPV 78 (597)
Q Consensus 38 pf~~C~LSl~pl~~P------------V~-t~~G~ly~ke~Il~~L~k~~~~Pv 78 (597)
.-+.|+|++++|.+| ++ .+-||.|-..+|.+||+...+.|+
T Consensus 18 ~~d~C~IC~~~l~~~~~~~~~~~~~~~i~~~~C~H~FH~~Ci~~Wl~~~~~CP~ 71 (73)
T PF12678_consen 18 ADDNCAICREPLEDPCPECQAPQDECPIVWGPCGHIFHFHCISQWLKQNNTCPL 71 (73)
T ss_dssp CCSBETTTTSBTTSTTCCHHHCTTTS-EEEETTSEEEEHHHHHHHHTTSSB-TT
T ss_pred cCCcccccChhhhChhhhhcCCccccceEecccCCCEEHHHHHHHHhcCCcCCC
Confidence 345699999999543 33 345999999999999988777775
No 110
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=75.20 E-value=1.2 Score=48.44 Aligned_cols=58 Identities=19% Similarity=0.166 Sum_probs=45.8
Q ss_pred ccccccccc--ccCceeEEEEecCcceehHHHHHHHhhcccCccccCCCCCCCCCCeeEec
Q 007574 101 YHCPVLNKV--FTEFTHIVAVKTTGNVFCFEAIKELNIKTKNWKELLTDEPFTKEDLITIQ 159 (597)
Q Consensus 101 ~~CPvt~k~--ft~~t~~v~ik~~G~V~s~eai~~l~~k~k~~~~lv~~~~f~~~DII~Lq 159 (597)
-.||+|... |..++++| +--|||.|...||+.-..+..-++||.|+.+-++.+|-.++
T Consensus 5 ~tcpiclds~~~~g~hr~v-sl~cghlFgs~cie~wl~k~~~~~cp~c~~katkr~i~~e~ 64 (463)
T KOG1645|consen 5 TTCPICLDSYTTAGNHRIV-SLQCGHLFGSQCIEKWLGKKTKMQCPLCSGKATKRQIRPEY 64 (463)
T ss_pred ccCceeeeeeeecCceEEe-eecccccccHHHHHHHHhhhhhhhCcccCChhHHHHHHHHH
Confidence 479999865 55677766 56699999999999855555568999999998888887654
No 111
>KOG0297 consensus TNF receptor-associated factor [Signal transduction mechanisms]
Probab=74.46 E-value=2.1 Score=47.08 Aligned_cols=105 Identities=18% Similarity=0.204 Sum_probs=66.4
Q ss_pred ccccCCCCCCCCceec-CCCCeeeHHhHHHHHHhcCCCCCCCCCCCCCCcccc-ccccccCc--ccccccccccccCcee
Q 007574 40 YCCALTFTPFEDPVCT-ADGSVFELMSITPYIRKYGKHPVTGTPLKLEDLIPL-TFHKNAEG--EYHCPVLNKVFTEFTH 115 (597)
Q Consensus 40 ~~C~LSl~pl~~PV~t-~~G~ly~ke~Il~~L~k~~~~Pvtg~~l~lkdLi~l-~f~kn~~~--~~~CPvt~k~ft~~t~ 115 (597)
..|+++..++.+|+-+ .-||.|+..+|..|+..+..+|+....+....+++. +..++... ...|++
T Consensus 22 l~C~~C~~vl~~p~~~~~cgh~fC~~C~~~~~~~~~~cp~~~~~~~~~~~~~~~~~~~~~~~~l~i~c~~---------- 91 (391)
T KOG0297|consen 22 LLCPICMSVLRDPVQTTTCGHRFCAGCLLESLSNHQKCPVCRQELTQAEELPVPRALRRELLKLPIRCIF---------- 91 (391)
T ss_pred ccCccccccccCCCCCCCCCCcccccccchhhccCcCCcccccccchhhccCchHHHHHHHHhccccccc----------
Confidence 4699999999999995 789999999999999998889988777776666651 12222111 122322
Q ss_pred EEEEecCcceehHHHHHHHhhcccCccccC-CCCCCCCCCee
Q 007574 116 IVAVKTTGNVFCFEAIKELNIKTKNWKELL-TDEPFTKEDLI 156 (597)
Q Consensus 116 ~v~ik~~G~V~s~eai~~l~~k~k~~~~lv-~~~~f~~~DII 156 (597)
+...|+-+...+.++.=...-...+|+. |+..+-+.|..
T Consensus 92 --~~~GC~~~~~l~~~~~Hl~~c~~~~C~~~C~~~~~~~d~~ 131 (391)
T KOG0297|consen 92 --ASRGCRADLELEALQGHLSTCDPLKCPHRCGVQVPRDDLE 131 (391)
T ss_pred --CCCCccccccHHHHHhHhccCCcccCccccccccchHHHH
Confidence 2355666666665554211112335555 66555554443
No 112
>KOG0396 consensus Uncharacterized conserved protein [Function unknown]
Probab=74.45 E-value=1.7 Score=46.83 Aligned_cols=54 Identities=22% Similarity=0.421 Sum_probs=39.3
Q ss_pred CCCCcc-------ccCCCCCCCC---ceecCCCCeeeHHhHHHHHHhcC-CCCCCCCCCCCCCcc
Q 007574 36 RLPFYC-------CALTFTPFED---PVCTADGSVFELMSITPYIRKYG-KHPVTGTPLKLEDLI 89 (597)
Q Consensus 36 ~lpf~~-------C~LSl~pl~~---PV~t~~G~ly~ke~Il~~L~k~~-~~Pvtg~~l~lkdLi 89 (597)
+|||.+ |.||+.-|.+ |++=|+|++|-..+|+.|=...+ .||.+++.+.-.+|+
T Consensus 320 ~LPfah~~~S~Lvc~isge~md~~N~P~lfpnG~Vyg~~~L~s~~~~~~i~dP~~~k~f~~~~l~ 384 (389)
T KOG0396|consen 320 ALPFAHHAQSRLVCSISGELMDDDNPPHLFPNGYVYGTKALESLNEDDGIGDPRTKKVFRYSELC 384 (389)
T ss_pred cCCchhhhhhHHHhhccccccCCCCCcccccCceeehhHHHHhhcccCCCcCCCCCccccHHHHH
Confidence 689987 7788888874 89999999999999998865553 356555554444443
No 113
>PF10367 Vps39_2: Vacuolar sorting protein 39 domain 2; InterPro: IPR019453 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised In Vps39 this domain is involved in localisation and in mediating the interactions with Vps11 [].
Probab=73.43 E-value=1.5 Score=38.34 Aligned_cols=31 Identities=26% Similarity=0.454 Sum_probs=25.6
Q ss_pred ccccccccccccCceeEEEEecCcceehHHHHH
Q 007574 100 EYHCPVLNKVFTEFTHIVAVKTTGNVFCFEAIK 132 (597)
Q Consensus 100 ~~~CPvt~k~ft~~t~~v~ik~~G~V~s~eai~ 132 (597)
.-.|+||++.|.+ ..+++-|||+||-+.|++
T Consensus 78 ~~~C~vC~k~l~~--~~f~~~p~~~v~H~~C~~ 108 (109)
T PF10367_consen 78 STKCSVCGKPLGN--SVFVVFPCGHVVHYSCIK 108 (109)
T ss_pred CCCccCcCCcCCC--ceEEEeCCCeEEeccccc
Confidence 4569999999987 456678999999988875
No 114
>KOG0287 consensus Postreplication repair protein RAD18 [Replication, recombination and repair]
Probab=73.42 E-value=1.3 Score=47.03 Aligned_cols=51 Identities=18% Similarity=0.225 Sum_probs=40.5
Q ss_pred cccccccccccccCceeEEEEecCcceehHHHHHHHhhcccCccccCCCCCCCCCCe
Q 007574 99 GEYHCPVLNKVFTEFTHIVAVKTTGNVFCFEAIKELNIKTKNWKELLTDEPFTKEDL 155 (597)
Q Consensus 99 ~~~~CPvt~k~ft~~t~~v~ik~~G~V~s~eai~~l~~k~k~~~~lv~~~~f~~~DI 155 (597)
.-..|-||+.-|+ +-+|-||||-||-=||..+--. .-.||.|-.+|++.|+
T Consensus 22 ~lLRC~IC~eyf~----ip~itpCsHtfCSlCIR~~L~~--~p~CP~C~~~~~Es~L 72 (442)
T KOG0287|consen 22 DLLRCGICFEYFN----IPMITPCSHTFCSLCIRKFLSY--KPQCPTCCVTVTESDL 72 (442)
T ss_pred HHHHHhHHHHHhc----CceeccccchHHHHHHHHHhcc--CCCCCceecccchhhh
Confidence 3467999998886 5678899999999999985321 2369999999998764
No 115
>PF12861 zf-Apc11: Anaphase-promoting complex subunit 11 RING-H2 finger
Probab=71.62 E-value=4 Score=35.35 Aligned_cols=53 Identities=26% Similarity=0.535 Sum_probs=39.6
Q ss_pred CCCCCCc-cccCCCCCCCC-ceec-CCCCeeeHHhHHHHHHhc---CCCCCCCCCCCCC
Q 007574 34 FKRLPFY-CCALTFTPFED-PVCT-ADGSVFELMSITPYIRKY---GKHPVTGTPLKLE 86 (597)
Q Consensus 34 ~~~lpf~-~C~LSl~pl~~-PV~t-~~G~ly~ke~Il~~L~k~---~~~Pvtg~~l~lk 86 (597)
+.|.+|+ +|+-+..|-.+ |+|- .-||.|-.-+|++||... +..|+-+++...+
T Consensus 26 ICr~~fdg~Cp~Ck~Pgd~Cplv~g~C~H~FH~hCI~kWl~~~~~~~~CPmCR~~w~~k 84 (85)
T PF12861_consen 26 ICRMPFDGCCPDCKFPGDDCPLVWGKCSHNFHMHCILKWLSTQSSKGQCPMCRQPWKFK 84 (85)
T ss_pred eEecccccCCCCccCCCCCCceeeccCccHHHHHHHHHHHccccCCCCCCCcCCeeeeC
Confidence 4577888 58888888776 8774 459999999999999853 4567766655443
No 116
>PF14835 zf-RING_6: zf-RING of BARD1-type protein; PDB: 1JM7_B.
Probab=71.54 E-value=1.3 Score=36.34 Aligned_cols=49 Identities=18% Similarity=0.351 Sum_probs=23.9
Q ss_pred cccccccccccCceeEEEEecCcceehHHHHHHHhhcccCccccCCCCCCCCCCee
Q 007574 101 YHCPVLNKVFTEFTHIVAVKTTGNVFCFEAIKELNIKTKNWKELLTDEPFTKEDLI 156 (597)
Q Consensus 101 ~~CPvt~k~ft~~t~~v~ik~~G~V~s~eai~~l~~k~k~~~~lv~~~~f~~~DII 156 (597)
..|+++...|..- |.+..|.|+|+..||... +. ..||+|..|-..+|+-
T Consensus 8 LrCs~C~~~l~~p---v~l~~CeH~fCs~Ci~~~-~~---~~CPvC~~Paw~qD~~ 56 (65)
T PF14835_consen 8 LRCSICFDILKEP---VCLGGCEHIFCSSCIRDC-IG---SECPVCHTPAWIQDIQ 56 (65)
T ss_dssp TS-SSS-S--SS----B---SSS--B-TTTGGGG-TT---TB-SSS--B-S-SS--
T ss_pred cCCcHHHHHhcCC---ceeccCccHHHHHHhHHh-cC---CCCCCcCChHHHHHHH
Confidence 4688888887755 678999999999999774 22 2699999998887764
No 117
>KOG0287 consensus Postreplication repair protein RAD18 [Replication, recombination and repair]
Probab=71.53 E-value=1.3 Score=47.03 Aligned_cols=55 Identities=22% Similarity=0.374 Sum_probs=42.9
Q ss_pred CCCCC-CccccCCCCCCCCceecCCCCeeeHHhHHHHHHhcCCCCCCCCCCCCCCc
Q 007574 34 FKRLP-FYCCALTFTPFEDPVCTADGSVFELMSITPYIRKYGKHPVTGTPLKLEDL 88 (597)
Q Consensus 34 ~~~lp-f~~C~LSl~pl~~PV~t~~G~ly~ke~Il~~L~k~~~~Pvtg~~l~lkdL 88 (597)
++.|+ ...|-||.+=|.-||+++.||.||--||-.||..+..+|..--+..-.+|
T Consensus 17 lk~lD~lLRC~IC~eyf~ip~itpCsHtfCSlCIR~~L~~~p~CP~C~~~~~Es~L 72 (442)
T KOG0287|consen 17 LKTLDDLLRCGICFEYFNIPMITPCSHTFCSLCIRKFLSYKPQCPTCCVTVTESDL 72 (442)
T ss_pred hhhhHHHHHHhHHHHHhcCceeccccchHHHHHHHHHhccCCCCCceecccchhhh
Confidence 34444 55799999999999999999999999999999988777765444433333
No 118
>PF14634 zf-RING_5: zinc-RING finger domain
Probab=69.11 E-value=4.2 Score=30.33 Aligned_cols=30 Identities=20% Similarity=0.421 Sum_probs=24.7
Q ss_pred cccCCCCCC---CCceecCCCCeeeHHhHHHHH
Q 007574 41 CCALTFTPF---EDPVCTADGSVFELMSITPYI 70 (597)
Q Consensus 41 ~C~LSl~pl---~~PV~t~~G~ly~ke~Il~~L 70 (597)
+|.++++++ ..|+++.=||+|+...|....
T Consensus 1 ~C~~C~~~~~~~~~~~l~~CgH~~C~~C~~~~~ 33 (44)
T PF14634_consen 1 HCNICFEKYSEERRPRLTSCGHIFCEKCLKKLK 33 (44)
T ss_pred CCcCcCccccCCCCeEEcccCCHHHHHHHHhhc
Confidence 477777777 357888889999999998876
No 119
>PF12678 zf-rbx1: RING-H2 zinc finger; InterPro: IPR024766 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This domain constitutes a conserved region found in proteins that participate in diverse functions relevant to chromosome metabolism and cell cycle control [].The domain contains 8 cysteine/ histidine residues which are proposed to be the conserved residues involved in zinc binding.; PDB: 4A0C_D 4A0L_I 4A0K_B 2ECL_A 1LDK_C 3RTR_F 3DQV_Y 1U6G_B 1LDJ_B 2HYE_D ....
Probab=64.34 E-value=5.4 Score=33.26 Aligned_cols=43 Identities=14% Similarity=0.240 Sum_probs=31.1
Q ss_pred ccccccccccC---------ceeEEEEecCcceehHHHHHHHhhcccCccccCC
Q 007574 102 HCPVLNKVFTE---------FTHIVAVKTTGNVFCFEAIKELNIKTKNWKELLT 146 (597)
Q Consensus 102 ~CPvt~k~ft~---------~t~~v~ik~~G~V~s~eai~~l~~k~k~~~~lv~ 146 (597)
.|+|+...|.+ ..-.+++-+|||+|-..||.+..... ..||+|
T Consensus 21 ~C~IC~~~l~~~~~~~~~~~~~~~i~~~~C~H~FH~~Ci~~Wl~~~--~~CP~C 72 (73)
T PF12678_consen 21 NCAICREPLEDPCPECQAPQDECPIVWGPCGHIFHFHCISQWLKQN--NTCPLC 72 (73)
T ss_dssp BETTTTSBTTSTTCCHHHCTTTS-EEEETTSEEEEHHHHHHHHTTS--SB-TTS
T ss_pred cccccChhhhChhhhhcCCccccceEecccCCCEEHHHHHHHHhcC--CcCCCC
Confidence 49999999933 23456777899999999999875332 379988
No 120
>cd00350 rubredoxin_like Rubredoxin_like; nonheme iron binding domain containing a [Fe(SCys)4] center. The family includes rubredoxins, a small electron transfer protein, and a slightly smaller modular rubredoxin domain present in rubrerythrin and nigerythrin and detected either N- or C-terminal to such proteins as flavin reductase, NAD(P)H-nitrite reductase, and ferredoxin-thioredoxin reductase. In rubredoxin, the iron atom is coordinated by four cysteine residues (Fe(S-Cys)4), but iron can also be replaced by cobalt, nickel or zinc and believed to be involved in electron transfer. Rubrerythrins and nigerythrins are small homodimeric proteins, generally consisting of 2 domains: a rubredoxin domain C-terminal to a non-sulfur, oxo-bridged diiron site in the N-terminal rubrerythrin domain. Rubrerythrins and nigerythrins have putative peroxide activity.
Probab=63.48 E-value=5.1 Score=28.28 Aligned_cols=11 Identities=18% Similarity=0.453 Sum_probs=8.8
Q ss_pred cCccccCCCCC
Q 007574 139 KNWKELLTDEP 149 (597)
Q Consensus 139 k~~~~lv~~~~ 149 (597)
..|+||+|+.+
T Consensus 16 ~~~~CP~Cg~~ 26 (33)
T cd00350 16 APWVCPVCGAP 26 (33)
T ss_pred CCCcCcCCCCc
Confidence 46899999864
No 121
>PF10915 DUF2709: Protein of unknown function (DUF2709); InterPro: IPR024484 Members of this family appear restricted to Chlamydiales. Their function is unknown.
Probab=63.31 E-value=2.9 Score=41.33 Aligned_cols=58 Identities=31% Similarity=0.397 Sum_probs=32.6
Q ss_pred cee-cCCCCee-eHHhHHHHHHhcCCCCCCCCCCCCCCcccccccc---c--cCcccccccccccccCceeE
Q 007574 52 PVC-TADGSVF-ELMSITPYIRKYGKHPVTGTPLKLEDLIPLTFHK---N--AEGEYHCPVLNKVFTEFTHI 116 (597)
Q Consensus 52 PV~-t~~G~ly-~ke~Il~~L~k~~~~Pvtg~~l~lkdLi~l~f~k---n--~~~~~~CPvt~k~ft~~t~~ 116 (597)
||+ -.+-.+| ..+.++..|+.-+.- =..--|.+-+-. | ..--|+||.|+|+|.+|+|-
T Consensus 39 PVlF~rdK~I~qs~e~ai~~lE~e~Kl-------WreteI~I~~g~p~VNE~TkkIYICPFTGKVF~DNt~~ 103 (238)
T PF10915_consen 39 PVLFVRDKIIFQSAEDAIRILEEEGKL-------WRETEIKIQSGKPSVNEQTKKIYICPFTGKVFGDNTHP 103 (238)
T ss_pred ceeeecchhhccCHHHHHHHHHHhcch-------heeeeEEEecCCcccccccceEEEcCCcCccccCCCCC
Confidence 555 4456666 467777777654321 000111222211 2 22349999999999999763
No 122
>COG5627 MMS21 DNA repair protein MMS21 [DNA replication, recombination, and repair]
Probab=61.05 E-value=3.7 Score=41.80 Aligned_cols=33 Identities=18% Similarity=0.203 Sum_probs=29.3
Q ss_pred ccccCCCCCCCCceec-CCCCeeeHHhHHHHHHh
Q 007574 40 YCCALTFTPFEDPVCT-ADGSVFELMSITPYIRK 72 (597)
Q Consensus 40 ~~C~LSl~pl~~PV~t-~~G~ly~ke~Il~~L~k 72 (597)
+.|+|+++|...|+++ .--|.|+++.|..+|.-
T Consensus 190 nrCpitl~p~~~pils~kcnh~~e~D~I~~~lq~ 223 (275)
T COG5627 190 NRCPITLNPDFYPILSSKCNHKPEMDLINKKLQV 223 (275)
T ss_pred ccCCcccCcchhHHHHhhhcccccHHHHHHHhcC
Confidence 5699999999999985 45999999999999974
No 123
>KOG0396 consensus Uncharacterized conserved protein [Function unknown]
Probab=60.43 E-value=3.9 Score=44.20 Aligned_cols=78 Identities=19% Similarity=0.266 Sum_probs=59.0
Q ss_pred CCCCCCCCCCCCccccccccccCcccccccccccccCceeEEEEecCcceehHHHHHHHhhcccCccccCCCCCCCCCCe
Q 007574 76 HPVTGTPLKLEDLIPLTFHKNAEGEYHCPVLNKVFTEFTHIVAVKTTGNVFCFEAIKELNIKTKNWKELLTDEPFTKEDL 155 (597)
Q Consensus 76 ~Pvtg~~l~lkdLi~l~f~kn~~~~~~CPvt~k~ft~~t~~v~ik~~G~V~s~eai~~l~~k~k~~~~lv~~~~f~~~DI 155 (597)
+|+..+.+..-- -+|+|.........|-+++..+++. ..=.+.|.|.||...+++.++-..+ ..||.+++-|...+.
T Consensus 307 CpvC~~~f~~ia-~~LPfah~~~S~Lvc~isge~md~~-N~P~lfpnG~Vyg~~~L~s~~~~~~-i~dP~~~k~f~~~~l 383 (389)
T KOG0396|consen 307 CPVCCEAFKPIA-QALPFAHHAQSRLVCSISGELMDDD-NPPHLFPNGYVYGTKALESLNEDDG-IGDPRTKKVFRYSEL 383 (389)
T ss_pred CCCcccccchhh-hcCCchhhhhhHHHhhccccccCCC-CCcccccCceeehhHHHHhhcccCC-CcCCCCCccccHHHH
Confidence 456655443332 3788888888899999999999885 3334689999999999999876543 779999998876654
Q ss_pred e
Q 007574 156 I 156 (597)
Q Consensus 156 I 156 (597)
+
T Consensus 384 ~ 384 (389)
T KOG0396|consen 384 C 384 (389)
T ss_pred H
Confidence 4
No 124
>PHA02926 zinc finger-like protein; Provisional
Probab=54.45 E-value=11 Score=38.37 Aligned_cols=52 Identities=13% Similarity=0.284 Sum_probs=37.9
Q ss_pred CccccCCCCCCCC---------ceecCCCCeeeHHhHHHHHHhcCCCCCCCCCCCCCCccccccccccCccccccccccc
Q 007574 39 FYCCALTFTPFED---------PVCTADGSVFELMSITPYIRKYGKHPVTGTPLKLEDLIPLTFHKNAEGEYHCPVLNKV 109 (597)
Q Consensus 39 f~~C~LSl~pl~~---------PV~t~~G~ly~ke~Il~~L~k~~~~Pvtg~~l~lkdLi~l~f~kn~~~~~~CPvt~k~ 109 (597)
-.-|+||++..-+ ++..+-+|+||..||..|-.... .......||+|...
T Consensus 170 E~eCgICmE~I~eK~~~~eRrFGIL~~CnHsFCl~CIr~Wr~~r~---------------------~~~~~rsCPiCR~~ 228 (242)
T PHA02926 170 EKECGICYEVVYSKRLENDRYFGLLDSCNHIFCITCINIWHRTRR---------------------ETGASDNCPICRTR 228 (242)
T ss_pred CCCCccCccccccccccccccccccCCCCchHHHHHHHHHHHhcc---------------------ccCcCCcCCCCcce
Confidence 3569999987633 46778899999999999987431 01234568888777
Q ss_pred cc
Q 007574 110 FT 111 (597)
Q Consensus 110 ft 111 (597)
|.
T Consensus 229 f~ 230 (242)
T PHA02926 229 FR 230 (242)
T ss_pred ee
Confidence 65
No 125
>KOG2932 consensus E3 ubiquitin ligase involved in ubiquitination of E-cadherin complex [Posttranslational modification, protein turnover, chaperones]
Probab=54.29 E-value=4.6 Score=42.70 Aligned_cols=47 Identities=19% Similarity=0.323 Sum_probs=31.0
Q ss_pred cccccccccCceeEEE--EecCcceehHHHHHHHhhcccCccccCCCCCCCCCCeeEe
Q 007574 103 CPVLNKVFTEFTHIVA--VKTTGNVFCFEAIKELNIKTKNWKELLTDEPFTKEDLITI 158 (597)
Q Consensus 103 CPvt~k~ft~~t~~v~--ik~~G~V~s~eai~~l~~k~k~~~~lv~~~~f~~~DII~L 158 (597)
|--|.+.+. || +-+|.||||++|-.. ...| .|+.|+++..+-.-|++
T Consensus 93 Cd~Cd~PI~-----IYGRmIPCkHvFCl~CAr~--~~dK--~Cp~C~d~VqrIeq~~~ 141 (389)
T KOG2932|consen 93 CDRCDFPIA-----IYGRMIPCKHVFCLECARS--DSDK--ICPLCDDRVQRIEQIMM 141 (389)
T ss_pred ecccCCcce-----eeecccccchhhhhhhhhc--Cccc--cCcCcccHHHHHHHhcc
Confidence 444555543 33 338999999999865 2333 79999988776444443
No 126
>COG5222 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=53.76 E-value=9.3 Score=40.20 Aligned_cols=37 Identities=19% Similarity=0.229 Sum_probs=30.7
Q ss_pred CCCCCCccccCCCCCCCCceecC-CCCeeeHHhHHHHHH
Q 007574 34 FKRLPFYCCALTFTPFEDPVCTA-DGSVFELMSITPYIR 71 (597)
Q Consensus 34 ~~~lpf~~C~LSl~pl~~PV~t~-~G~ly~ke~Il~~L~ 71 (597)
+..++ .-|+||...+++||-|+ .|++||.+||...|.
T Consensus 270 ~~~i~-LkCplc~~Llrnp~kT~cC~~~fc~eci~~al~ 307 (427)
T COG5222 270 PPNIS-LKCPLCHCLLRNPMKTPCCGHTFCDECIGTALL 307 (427)
T ss_pred CCCcc-ccCcchhhhhhCcccCccccchHHHHHHhhhhh
Confidence 34445 56999999999999885 499999999998876
No 127
>PF14446 Prok-RING_1: Prokaryotic RING finger family 1
Probab=52.77 E-value=11 Score=29.87 Aligned_cols=46 Identities=20% Similarity=0.307 Sum_probs=38.5
Q ss_pred ccccccccccccCceeEEEEecCcceehHHHHHHHhhcccCccccC--CCCCCC
Q 007574 100 EYHCPVLNKVFTEFTHIVAVKTTGNVFCFEAIKELNIKTKNWKELL--TDEPFT 151 (597)
Q Consensus 100 ~~~CPvt~k~ft~~t~~v~ik~~G~V~s~eai~~l~~k~k~~~~lv--~~~~f~ 151 (597)
.-.|+++++.|.+.--||+=-.||-+|-.+|.+++. .|.. |+.+|.
T Consensus 5 ~~~C~~Cg~~~~~~dDiVvCp~CgapyHR~C~~~~g------~C~~~~c~~~~~ 52 (54)
T PF14446_consen 5 GCKCPVCGKKFKDGDDIVVCPECGAPYHRDCWEKAG------GCINYSCGTGFE 52 (54)
T ss_pred CccChhhCCcccCCCCEEECCCCCCcccHHHHhhCC------ceEeccCCCCcc
Confidence 457999999999888899888999999999998742 6777 877775
No 128
>smart00531 TFIIE Transcription initiation factor IIE.
Probab=52.26 E-value=8.8 Score=36.30 Aligned_cols=39 Identities=21% Similarity=0.304 Sum_probs=24.0
Q ss_pred CcccccccccccccCceeEEEEecCcceehHHHHHHHhhcccCccccCCCCCCCC
Q 007574 98 EGEYHCPVLNKVFTEFTHIVAVKTTGNVFCFEAIKELNIKTKNWKELLTDEPFTK 152 (597)
Q Consensus 98 ~~~~~CPvt~k~ft~~t~~v~ik~~G~V~s~eai~~l~~k~k~~~~lv~~~~f~~ 152 (597)
...|+||.|+..|+- .+++..+. ....+.||.|+.++..
T Consensus 97 ~~~Y~Cp~C~~~y~~---------------~ea~~~~d-~~~~f~Cp~Cg~~l~~ 135 (147)
T smart00531 97 NAYYKCPNCQSKYTF---------------LEANQLLD-MDGTFTCPRCGEELEE 135 (147)
T ss_pred CcEEECcCCCCEeeH---------------HHHHHhcC-CCCcEECCCCCCEEEE
Confidence 457899976655541 23333222 3445899999987644
No 129
>PRK06266 transcription initiation factor E subunit alpha; Validated
Probab=50.98 E-value=12 Score=36.81 Aligned_cols=34 Identities=21% Similarity=0.231 Sum_probs=25.1
Q ss_pred CcccccccccccccCceeEEEEecCcceehHHHHHHHhhcccCccccCCCCCCCC
Q 007574 98 EGEYHCPVLNKVFTEFTHIVAVKTTGNVFCFEAIKELNIKTKNWKELLTDEPFTK 152 (597)
Q Consensus 98 ~~~~~CPvt~k~ft~~t~~v~ik~~G~V~s~eai~~l~~k~k~~~~lv~~~~f~~ 152 (597)
...|+||-|+..|+- .+|++ ..+.||+||.++..
T Consensus 115 ~~~Y~Cp~C~~rytf---------------~eA~~------~~F~Cp~Cg~~L~~ 148 (178)
T PRK06266 115 NMFFFCPNCHIRFTF---------------DEAME------YGFRCPQCGEMLEE 148 (178)
T ss_pred CCEEECCCCCcEEeH---------------HHHhh------cCCcCCCCCCCCee
Confidence 467999999877762 24443 36899999998765
No 130
>TIGR00570 cdk7 CDK-activating kinase assembly factor MAT1. All proteins in this family for which functions are known are cyclin dependent protein kinases that are components of TFIIH, a complex that is involved in nucleotide excision repair and transcription initiation. Also known as MAT1 (menage a trois 1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=49.62 E-value=16 Score=38.86 Aligned_cols=32 Identities=13% Similarity=0.211 Sum_probs=23.0
Q ss_pred ccccCCCCC-CCCc----eecCCCCeeeHHhHHHHHH
Q 007574 40 YCCALTFTP-FEDP----VCTADGSVFELMSITPYIR 71 (597)
Q Consensus 40 ~~C~LSl~p-l~~P----V~t~~G~ly~ke~Il~~L~ 71 (597)
..||+|+.- ...| ++.+-||.||..||...+.
T Consensus 4 ~~CP~Ck~~~y~np~~kl~i~~CGH~~C~sCv~~l~~ 40 (309)
T TIGR00570 4 QGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFV 40 (309)
T ss_pred CCCCcCCCCCccCcccccccCCCCCcccHHHHHHHhc
Confidence 358888773 2233 4556799999999999763
No 131
>COG5189 SFP1 Putative transcriptional repressor regulating G2/M transition [Transcription / Cell division and chromosome partitioning]
Probab=48.07 E-value=4.1 Score=43.21 Aligned_cols=54 Identities=20% Similarity=0.329 Sum_probs=35.3
Q ss_pred ccccccc--ccccccCceeEEEEecCcce-------ehHHHHHHHhhcccCccccCCCCCCCC
Q 007574 99 GEYHCPV--LNKVFTEFTHIVAVKTTGNV-------FCFEAIKELNIKTKNWKELLTDEPFTK 152 (597)
Q Consensus 99 ~~~~CPv--t~k~ft~~t~~v~ik~~G~V-------~s~eai~~l~~k~k~~~~lv~~~~f~~ 152 (597)
-.|-||| |.|...+..-+-|-+--||- -+.+-.+-|..+.|.++|++|++.|+-
T Consensus 348 KpykCpV~gC~K~YknqnGLKYH~lhGH~~~~~~~~p~p~~~~~F~~~~KPYrCevC~KRYKN 410 (423)
T COG5189 348 KPYKCPVEGCNKKYKNQNGLKYHMLHGHQNQKLHENPSPEKMNIFSAKDKPYRCEVCDKRYKN 410 (423)
T ss_pred ceecCCCCCchhhhccccchhhhhhccccCcccCCCCCccccccccccCCceeccccchhhcc
Confidence 4589999 55777665444444444441 133444455677899999999998864
No 132
>PF04126 Cyclophil_like: Cyclophilin-like; InterPro: IPR007256 Proteins of this family have no known function.; PDB: 2KA0_A 1ZX8_C 2NNZ_A.
Probab=47.63 E-value=1.2e+02 Score=27.62 Aligned_cols=99 Identities=15% Similarity=0.230 Sum_probs=52.6
Q ss_pred EEEEEeCeeEEEEeCCCCChhhHHHHHHHH----hccccCCceEEEeecCcEEEecCCCCCCCCCCccCCCCCC-Ccccc
Q 007574 351 VQLHTTHGDLNIELHCDITPRSCENFITLC----ERGYYNGVAFHRSIRNFMIQGGDPTGTGRGGESIWGKPFK-DEVNS 425 (597)
Q Consensus 351 V~l~T~~G~I~IEL~~d~aP~tv~NFl~L~----~~g~Y~gt~fhRvi~~f~IQgGdptg~g~gg~si~g~~f~-dE~~~ 425 (597)
++|.-....+.++|+.. .|++.|+++. +-..|-+ .++--.+- .++ ++ ..
T Consensus 3 I~i~i~~~~~~a~L~d~---~ta~~~~~~LPlt~~~~~~g~-E~y~~~p~---------------------~l~~~~-~~ 56 (120)
T PF04126_consen 3 IKITIGGQEIEAELNDS---PTARAFAAQLPLTVTMNDWGN-EKYFSLPL---------------------KLPTEE-NP 56 (120)
T ss_dssp EEEEETTEEEEEEEETT---HHHHHHHHC-SEEEEEEECTT-EEEEE-S--------------------------SS-SE
T ss_pred EEEEECCEEEEEEECCC---HHHHHHHHhCCeEEEHHHCCc-eEEEeCCC---------------------CCCccc-Cc
Confidence 45666667899999977 7888888876 1112322 22111110 011 11 11
Q ss_pred cccCCCccEEEEecCCCCCCCcceEEeccCCC-------CCCCCCcEEEEEEcChHHHHHHhc
Q 007574 426 KLLHSGRGVVSMANSGPHTNGSQFFILYKSAT-------HLNYKHTVFGGVVGGLTTLAAMEK 481 (597)
Q Consensus 426 ~l~h~~rG~lsman~g~ntngSqFFItl~~~p-------~LD~k~tVFGrVv~G~dvL~~Ie~ 481 (597)
. .-...|-|+.-.. +.-|-|-+++.| .+-....++|||++|.+.|..+..
T Consensus 57 ~-~~~~~GDi~Yw~p-----g~~l~ifyg~~p~S~~~~~~~~~~v~~lG~i~~~~~~l~~~~~ 113 (120)
T PF04126_consen 57 R-SSVEAGDIAYWPP-----GGALAIFYGDTPISEGGEIRPASPVNVLGRIVSDLENLKEVKG 113 (120)
T ss_dssp E-SSB-TTEEEEECC-----CTEEEEESS--TT--TTSB--SSSEEEEEEEEC-GGGGGG--T
T ss_pred c-ccccCceEEEeCC-----CCEEEEEecCcccccccccccCCcceEEEEECCCHHHHhhCCC
Confidence 1 1235777777543 234777777764 455667899999999998888743
No 133
>TIGR00373 conserved hypothetical protein TIGR00373. This family of proteins is, so far, restricted to archaeal genomes. The family appears to be distantly related to the N-terminal region of the eukaryotic transcription initiation factor IIE alpha chain.
Probab=46.65 E-value=15 Score=35.36 Aligned_cols=34 Identities=21% Similarity=0.176 Sum_probs=24.4
Q ss_pred CcccccccccccccCceeEEEEecCcceehHHHHHHHhhcccCccccCCCCCCCC
Q 007574 98 EGEYHCPVLNKVFTEFTHIVAVKTTGNVFCFEAIKELNIKTKNWKELLTDEPFTK 152 (597)
Q Consensus 98 ~~~~~CPvt~k~ft~~t~~v~ik~~G~V~s~eai~~l~~k~k~~~~lv~~~~f~~ 152 (597)
...|+||-|+..|+- .+|++ .++.||+||.++..
T Consensus 107 ~~~Y~Cp~c~~r~tf---------------~eA~~------~~F~Cp~Cg~~L~~ 140 (158)
T TIGR00373 107 NMFFICPNMCVRFTF---------------NEAME------LNFTCPRCGAMLDY 140 (158)
T ss_pred CCeEECCCCCcEeeH---------------HHHHH------cCCcCCCCCCEeee
Confidence 467999998877762 44553 36899999987543
No 134
>cd00730 rubredoxin Rubredoxin; nonheme iron binding domains containing a [Fe(SCys)4] center. Rubredoxins are small nonheme iron proteins. The iron atom is coordinated by four cysteine residues (Fe(S-Cys)4), but iron can also be replaced by cobalt, nickel or zinc. They are believed to be involved in electron transfer.
Probab=46.61 E-value=8.6 Score=30.02 Aligned_cols=12 Identities=8% Similarity=0.274 Sum_probs=9.8
Q ss_pred ccCccccCCCCC
Q 007574 138 TKNWKELLTDEP 149 (597)
Q Consensus 138 ~k~~~~lv~~~~ 149 (597)
+..|+||+|+.+
T Consensus 32 p~~w~CP~C~a~ 43 (50)
T cd00730 32 PDDWVCPVCGAG 43 (50)
T ss_pred CCCCCCCCCCCc
Confidence 458999999964
No 135
>KOG2462 consensus C2H2-type Zn-finger protein [Transcription]
Probab=46.48 E-value=16 Score=38.21 Aligned_cols=56 Identities=18% Similarity=0.333 Sum_probs=39.3
Q ss_pred CcccccccccccccCce---------------eEEEEecCccee-hHHHHHHHhhccc-CccccCCCCCCCCC
Q 007574 98 EGEYHCPVLNKVFTEFT---------------HIVAVKTTGNVF-CFEAIKELNIKTK-NWKELLTDEPFTKE 153 (597)
Q Consensus 98 ~~~~~CPvt~k~ft~~t---------------~~v~ik~~G~V~-s~eai~~l~~k~k-~~~~lv~~~~f~~~ 153 (597)
.+.|+||-|+|...+.+ +..--+.||-|| +.-|++.....-+ .++|.+||+.|.|-
T Consensus 128 ~~r~~c~eCgk~ysT~snLsrHkQ~H~~~~s~ka~~C~~C~K~YvSmpALkMHirTH~l~c~C~iCGKaFSRP 200 (279)
T KOG2462|consen 128 HPRYKCPECGKSYSTSSNLSRHKQTHRSLDSKKAFSCKYCGKVYVSMPALKMHIRTHTLPCECGICGKAFSRP 200 (279)
T ss_pred CCceeccccccccccccccchhhcccccccccccccCCCCCceeeehHHHhhHhhccCCCcccccccccccch
Confidence 46799999999987754 122234688887 6667766543322 57899999999873
No 136
>KOG0825 consensus PHD Zn-finger protein [General function prediction only]
Probab=46.36 E-value=6.2 Score=46.38 Aligned_cols=52 Identities=19% Similarity=0.207 Sum_probs=40.3
Q ss_pred cccccccccccccCceeEEEEecCcceehHHHHHHHhhcccCccccCCCCCCCCC
Q 007574 99 GEYHCPVLNKVFTEFTHIVAVKTTGNVFCFEAIKELNIKTKNWKELLTDEPFTKE 153 (597)
Q Consensus 99 ~~~~CPvt~k~ft~~t~~v~ik~~G~V~s~eai~~l~~k~k~~~~lv~~~~f~~~ 153 (597)
+.-.||+|-+.|.+.- +..-++|+|.||..||.-...-.. -||+|-..|.+-
T Consensus 122 ~~~~CP~Ci~s~~DqL-~~~~k~c~H~FC~~Ci~sWsR~aq--TCPiDR~EF~~v 173 (1134)
T KOG0825|consen 122 VENQCPNCLKSCNDQL-EESEKHTAHYFCEECVGSWSRCAQ--TCPVDRGEFGEV 173 (1134)
T ss_pred hhhhhhHHHHHHHHHh-hccccccccccHHHHhhhhhhhcc--cCchhhhhhhee
Confidence 3456999999888653 344678999999999998765544 699999999763
No 137
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=46.00 E-value=11 Score=40.25 Aligned_cols=58 Identities=14% Similarity=0.182 Sum_probs=37.3
Q ss_pred CcccccccccccccCceeEEEEecCcceehHHHHHHHhhcccCccccCCCCCCCCCCeeE
Q 007574 98 EGEYHCPVLNKVFTEFTHIVAVKTTGNVFCFEAIKELNIKTKNWKELLTDEPFTKEDLIT 157 (597)
Q Consensus 98 ~~~~~CPvt~k~ft~~t~~v~ik~~G~V~s~eai~~l~~k~k~~~~lv~~~~f~~~DII~ 157 (597)
+.+| ||.|...+.=.-+=..--+||--+|.=|+..+.. .-+.+||-|-..|+++++-.
T Consensus 13 eed~-cplcie~mditdknf~pc~cgy~ic~fc~~~irq-~lngrcpacrr~y~denv~~ 70 (480)
T COG5175 13 EEDY-CPLCIEPMDITDKNFFPCPCGYQICQFCYNNIRQ-NLNGRCPACRRKYDDENVRY 70 (480)
T ss_pred cccc-CcccccccccccCCcccCCcccHHHHHHHHHHHh-hccCCChHhhhhccccceeE
Confidence 3445 9999887753333334567885555555444322 24679999999999888754
No 138
>COG5540 RING-finger-containing ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=45.70 E-value=18 Score=38.31 Aligned_cols=52 Identities=12% Similarity=0.142 Sum_probs=40.7
Q ss_pred cCcccccccccccccCceeEEEEecCcceehHHHHHHHhhcccCccccCCCCCC
Q 007574 97 AEGEYHCPVLNKVFTEFTHIVAVKTTGNVFCFEAIKELNIKTKNWKELLTDEPF 150 (597)
Q Consensus 97 ~~~~~~CPvt~k~ft~~t~~v~ik~~G~V~s~eai~~l~~k~k~~~~lv~~~~f 150 (597)
+.+..-|.||...|..+-+ +.+-||.|+|---|+++-...- ..+||+|..+.
T Consensus 320 a~~GveCaICms~fiK~d~-~~vlPC~H~FH~~Cv~kW~~~y-~~~CPvCrt~i 371 (374)
T COG5540 320 ADKGVECAICMSNFIKNDR-LRVLPCDHRFHVGCVDKWLLGY-SNKCPVCRTAI 371 (374)
T ss_pred cCCCceEEEEhhhhcccce-EEEeccCceechhHHHHHHhhh-cccCCccCCCC
Confidence 3455789999999998877 5577999999999999854322 24799998765
No 139
>KOG2169 consensus Zn-finger transcription factor [Transcription]
Probab=45.20 E-value=11 Score=43.97 Aligned_cols=98 Identities=16% Similarity=0.210 Sum_probs=59.3
Q ss_pred CCCeeeHHhHHHHHHhcCCCCCCCCCCCC-CCccccccccccC---------cccccccccccccCceeEEEEecCccee
Q 007574 57 DGSVFELMSITPYIRKYGKHPVTGTPLKL-EDLIPLTFHKNAE---------GEYHCPVLNKVFTEFTHIVAVKTTGNVF 126 (597)
Q Consensus 57 ~G~ly~ke~Il~~L~k~~~~Pvtg~~l~l-kdLi~l~f~kn~~---------~~~~CPvt~k~ft~~t~~v~ik~~G~V~ 126 (597)
-+..|..+.||+-++....-+. .+.. ..++..+.+-..+ -.+.||++++-+.=-.+-. .|+|+=
T Consensus 256 ~v~~~t~~~llq~~~~~~~~~~---~~~~s~~~~~~~l~~~~d~~i~tt~~~vSL~CPl~~~Rm~~P~r~~---~CkHlQ 329 (636)
T KOG2169|consen 256 FVEGLTSKDLLQRLKQNGKINR---NLSQSDALIKKKLTAGPDSEIATTSLRVSLNCPLSKMRMSLPARGH---TCKHLQ 329 (636)
T ss_pred EecccCHHHHHHHHhccCCccC---chhHhHHHhhcccccCCcccceeccceeEecCCcccceeecCCccc---ccccce
Confidence 3555667778877765443211 1121 2333444433322 2488999998876443322 467554
Q ss_pred hHHH--HHHHhhcccCccccCCCCCCCCCCeeEecC
Q 007574 127 CFEA--IKELNIKTKNWKELLTDEPFTKEDLITIQN 160 (597)
Q Consensus 127 s~ea--i~~l~~k~k~~~~lv~~~~f~~~DII~Lqd 160 (597)
|-++ +-++|.+.-.|+|+||++.+.-+++|..+.
T Consensus 330 cFD~~~~lq~n~~~pTW~CPVC~~~~~~e~l~iD~~ 365 (636)
T KOG2169|consen 330 CFDALSYLQMNEQKPTWRCPVCQKAAPFEGLIIDGY 365 (636)
T ss_pred ecchhhhHHhccCCCeeeCccCCccccccchhhhHH
Confidence 4444 455666667899999999999888886543
No 140
>KOG0824 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=45.09 E-value=11 Score=39.73 Aligned_cols=49 Identities=14% Similarity=0.072 Sum_probs=35.0
Q ss_pred ccccccccccCceeEEEEecCcceehHHHHHHHhhcccCccccCCCCCCCCCCee
Q 007574 102 HCPVLNKVFTEFTHIVAVKTTGNVFCFEAIKELNIKTKNWKELLTDEPFTKEDLI 156 (597)
Q Consensus 102 ~CPvt~k~ft~~t~~v~ik~~G~V~s~eai~~l~~k~k~~~~lv~~~~f~~~DII 156 (597)
.|++|.-..+-- ++-.|+|+||+.||+-.....+ .-|.+|--+|.. +|+
T Consensus 9 eC~IC~nt~n~P----v~l~C~HkFCyiCiKGsy~ndk-~~CavCR~pids-~i~ 57 (324)
T KOG0824|consen 9 ECLICYNTGNCP----VNLYCFHKFCYICIKGSYKNDK-KTCAVCRFPIDS-TID 57 (324)
T ss_pred cceeeeccCCcC----ccccccchhhhhhhcchhhcCC-CCCceecCCCCc-chh
Confidence 588877665422 3567999999999998654433 349999999975 344
No 141
>PF05605 zf-Di19: Drought induced 19 protein (Di19), zinc-binding; InterPro: IPR008598 This entry consists of several drought induced 19 (Di19) like and RING finger 114 proteins. Di19 has been found to be strongly expressed in both the roots and leaves of Arabidopsis thaliana during progressive drought [], whilst RING finger proteins are thought to play a role in spermatogenesis. The precise function is unknown.
Probab=43.63 E-value=9.4 Score=29.76 Aligned_cols=41 Identities=22% Similarity=0.267 Sum_probs=21.6
Q ss_pred ccccccccccccCceeEEEEecCcceehHHHHHHHhhcccCccccCCCCCCC
Q 007574 100 EYHCPVLNKVFTEFTHIVAVKTTGNVFCFEAIKELNIKTKNWKELLTDEPFT 151 (597)
Q Consensus 100 ~~~CPvt~k~ft~~t~~v~ik~~G~V~s~eai~~l~~k~k~~~~lv~~~~f~ 151 (597)
.|.||+|++.|+.. . +..=+.++=....++..||+|...++
T Consensus 2 ~f~CP~C~~~~~~~-~----------L~~H~~~~H~~~~~~v~CPiC~~~~~ 42 (54)
T PF05605_consen 2 SFTCPYCGKGFSES-S----------LVEHCEDEHRSESKNVVCPICSSRVT 42 (54)
T ss_pred CcCCCCCCCccCHH-H----------HHHHHHhHCcCCCCCccCCCchhhhh
Confidence 57899988866521 0 11111111112245678999986443
No 142
>COG5432 RAD18 RING-finger-containing E3 ubiquitin ligase [Signal transduction mechanisms]
Probab=43.12 E-value=14 Score=38.85 Aligned_cols=48 Identities=17% Similarity=0.147 Sum_probs=35.5
Q ss_pred cccccccccccccCceeEEEEecCcceehHHHHHHHhhcccCccccCCCCCCCC
Q 007574 99 GEYHCPVLNKVFTEFTHIVAVKTTGNVFCFEAIKELNIKTKNWKELLTDEPFTK 152 (597)
Q Consensus 99 ~~~~CPvt~k~ft~~t~~v~ik~~G~V~s~eai~~l~~k~k~~~~lv~~~~f~~ 152 (597)
.-..|-||.--|. |-++-+|||-||+=||+..-- ..-.||+|-++|.+
T Consensus 24 s~lrC~IC~~~i~----ip~~TtCgHtFCslCIR~hL~--~qp~CP~Cr~~~~e 71 (391)
T COG5432 24 SMLRCRICDCRIS----IPCETTCGHTFCSLCIRRHLG--TQPFCPVCREDPCE 71 (391)
T ss_pred hHHHhhhhhheee----cceecccccchhHHHHHHHhc--CCCCCccccccHHh
Confidence 3456888876553 567889999999999998421 23369999887764
No 143
>KOG2593 consensus Transcription initiation factor IIE, alpha subunit [Transcription]
Probab=42.88 E-value=15 Score=40.58 Aligned_cols=41 Identities=22% Similarity=0.366 Sum_probs=31.8
Q ss_pred CcccccccccccccCceeEEEEecCcceehHHHHHHHhhcccCccccCCCCCCCCC
Q 007574 98 EGEYHCPVLNKVFTEFTHIVAVKTTGNVFCFEAIKELNIKTKNWKELLTDEPFTKE 153 (597)
Q Consensus 98 ~~~~~CPvt~k~ft~~t~~v~ik~~G~V~s~eai~~l~~k~k~~~~lv~~~~f~~~ 153 (597)
...|.||+|.+.|+ +.+|+..|.-....++|-.|+.++.++
T Consensus 126 ~~~Y~Cp~C~kkyt---------------~Lea~~L~~~~~~~F~C~~C~gelveD 166 (436)
T KOG2593|consen 126 VAGYVCPNCQKKYT---------------SLEALQLLDNETGEFHCENCGGELVED 166 (436)
T ss_pred cccccCCccccchh---------------hhHHHHhhcccCceEEEecCCCchhcc
Confidence 46799999999998 367777766556678999999876543
No 144
>KOG4159 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=41.65 E-value=16 Score=40.44 Aligned_cols=39 Identities=21% Similarity=0.368 Sum_probs=31.0
Q ss_pred ccccCCCCCCCCceecCCCCeeeHHhHHHHHHhcCCCCC
Q 007574 40 YCCALTFTPFEDPVCTADGSVFELMSITPYIRKYGKHPV 78 (597)
Q Consensus 40 ~~C~LSl~pl~~PV~t~~G~ly~ke~Il~~L~k~~~~Pv 78 (597)
+-|.+|...|..||+++.||.|+..+|..-|.....+|.
T Consensus 85 f~c~vc~~~l~~pv~tpcghs~c~~Cl~r~ld~~~~cp~ 123 (398)
T KOG4159|consen 85 FECCVCSRALYPPVVTPCGHSFCLECLDRSLDQETECPL 123 (398)
T ss_pred hhhhhhHhhcCCCccccccccccHHHHHHHhccCCCCcc
Confidence 346689999999999999999999998885554444444
No 145
>KOG0883 consensus Cyclophilin type, U box-containing peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=40.22 E-value=15 Score=40.07 Aligned_cols=54 Identities=26% Similarity=0.412 Sum_probs=40.7
Q ss_pred CccccCCCCCCCC---cee-cCCCCeeeHHhHHHHHH--hcCCCCCCCCCCCCCCccccc
Q 007574 39 FYCCALTFTPFED---PVC-TADGSVFELMSITPYIR--KYGKHPVTGTPLKLEDLIPLT 92 (597)
Q Consensus 39 f~~C~LSl~pl~~---PV~-t~~G~ly~ke~Il~~L~--k~~~~Pvtg~~l~lkdLi~l~ 92 (597)
-+|||..+.+|.+ =|. -..|++|+.++|.+-=. ++..|-+|-+|.+..|||.|.
T Consensus 101 eyhcPvlfk~FT~~sHIvAv~TTGNvy~~eai~~LNiK~knwkdLltdepFtR~DiItiQ 160 (518)
T KOG0883|consen 101 EYHCPVLFKVFTRFSHIVAVRTTGNVYSWEAIEELNIKTKNWKDLLTDEPFTRADIITIQ 160 (518)
T ss_pred cccCceeeeeecccceEEEEEecCceeeHHHHHHhCcchhhHHHhhccCCcchhceeeec
Confidence 3689999999884 232 44699999999988542 455677788888888888765
No 146
>PF14353 CpXC: CpXC protein
Probab=39.31 E-value=28 Score=31.81 Aligned_cols=57 Identities=18% Similarity=0.088 Sum_probs=33.7
Q ss_pred cccccccccccCceeEEEEecCcceeh-HHHHHHHh-hcccCccccCCCCCCCCCCeeEecCCC
Q 007574 101 YHCPVLNKVFTEFTHIVAVKTTGNVFC-FEAIKELN-IKTKNWKELLTDEPFTKEDLITIQNPN 162 (597)
Q Consensus 101 ~~CPvt~k~ft~~t~~v~ik~~G~V~s-~eai~~l~-~k~k~~~~lv~~~~f~~~DII~Lqdp~ 162 (597)
..||.|+..|.- -+++.=|+-. .+..+++- -.-..+.||.||..|.-.=-+...||.
T Consensus 2 itCP~C~~~~~~-----~v~~~I~~~~~p~l~e~il~g~l~~~~CP~Cg~~~~~~~p~lY~D~~ 60 (128)
T PF14353_consen 2 ITCPHCGHEFEF-----EVWTSINADEDPELKEKILDGSLFSFTCPSCGHKFRLEYPLLYHDPE 60 (128)
T ss_pred cCCCCCCCeeEE-----EEEeEEcCcCCHHHHHHHHcCCcCEEECCCCCCceecCCCEEEEcCC
Confidence 579999999873 3444333322 23333321 122356899999999855555556654
No 147
>KOG4739 consensus Uncharacterized protein involved in synaptonemal complex formation [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=38.79 E-value=15 Score=37.69 Aligned_cols=43 Identities=16% Similarity=0.200 Sum_probs=31.6
Q ss_pred cccccccccccCceeEEEEecCcceehHHHHHHHhhcccCccccCCCCC
Q 007574 101 YHCPVLNKVFTEFTHIVAVKTTGNVFCFEAIKELNIKTKNWKELLTDEP 149 (597)
Q Consensus 101 ~~CPvt~k~ft~~t~~v~ik~~G~V~s~eai~~l~~k~k~~~~lv~~~~ 149 (597)
.||-.|+.-=. .+-.+|-.|+||||..|.+.- ..+ .|++|..+
T Consensus 4 VhCn~C~~~~~--~~~f~LTaC~HvfC~~C~k~~-~~~---~C~lCkk~ 46 (233)
T KOG4739|consen 4 VHCNKCFRFPS--QDPFFLTACRHVFCEPCLKAS-SPD---VCPLCKKS 46 (233)
T ss_pred EEeccccccCC--CCceeeeechhhhhhhhcccC-Ccc---ccccccce
Confidence 46877765444 444679999999999999762 122 89999887
No 148
>KOG1940 consensus Zn-finger protein [General function prediction only]
Probab=38.39 E-value=18 Score=38.06 Aligned_cols=55 Identities=11% Similarity=0.176 Sum_probs=45.3
Q ss_pred ccccccCcccccccccccccCceeEEEEecCcceehHHHHHHHhhcccCccccCCCC
Q 007574 92 TFHKNAEGEYHCPVLNKVFTEFTHIVAVKTTGNVFCFEAIKELNIKTKNWKELLTDE 148 (597)
Q Consensus 92 ~f~kn~~~~~~CPvt~k~ft~~t~~v~ik~~G~V~s~eai~~l~~k~k~~~~lv~~~ 148 (597)
++.+....+..||++...+......+-.-+|||.+..++++++.... +.||+|.+
T Consensus 150 H~c~e~~~~~ncPic~e~l~~s~~~~~~~~CgH~~h~~cf~e~~~~~--y~CP~C~~ 204 (276)
T KOG1940|consen 150 HKCVERSSEFNCPICKEYLFLSFEDAGVLKCGHYMHSRCFEEMICEG--YTCPICSK 204 (276)
T ss_pred cchhhhcccCCCchhHHHhccccccCCccCcccchHHHHHHHHhccC--CCCCcccc
Confidence 44455556677999999999988888889999999999999986543 99999964
No 149
>PRK05452 anaerobic nitric oxide reductase flavorubredoxin; Provisional
Probab=37.64 E-value=31 Score=39.01 Aligned_cols=45 Identities=11% Similarity=0.048 Sum_probs=25.0
Q ss_pred CcccccccccccccCceeEEEEecCcceehHHHHHHHhhcccCccccCCCCC
Q 007574 98 EGEYHCPVLNKVFTEFTHIVAVKTTGNVFCFEAIKELNIKTKNWKELLTDEP 149 (597)
Q Consensus 98 ~~~~~CPvt~k~ft~~t~~v~ik~~G~V~s~eai~~l~~k~k~~~~lv~~~~ 149 (597)
...|.|++|+-+.....- -+...+-.--.++.| +..|+||+|+.+
T Consensus 423 ~~~~~c~~c~~~yd~~~g----~~~~~~~~gt~~~~l---p~~~~cp~c~~~ 467 (479)
T PRK05452 423 GPRMQCSVCQWIYDPAKG----EPMQDVAPGTPWSEV---PDNFLCPECSLG 467 (479)
T ss_pred CCeEEECCCCeEECCCCC----CcccCCCCCCChhhC---CCCCcCcCCCCc
Confidence 467889888766654210 011112222233443 568999999975
No 150
>COG1592 Rubrerythrin [Energy production and conversion]
Probab=36.38 E-value=19 Score=35.00 Aligned_cols=10 Identities=10% Similarity=-0.070 Sum_probs=7.7
Q ss_pred CccccCCCCC
Q 007574 140 NWKELLTDEP 149 (597)
Q Consensus 140 ~~~~lv~~~~ 149 (597)
.++||+|+.|
T Consensus 149 P~~CPiCga~ 158 (166)
T COG1592 149 PEVCPICGAP 158 (166)
T ss_pred CCcCCCCCCh
Confidence 4589999954
No 151
>COG5152 Uncharacterized conserved protein, contains RING and CCCH-type Zn-fingers [General function prediction only]
Probab=35.53 E-value=21 Score=35.62 Aligned_cols=46 Identities=15% Similarity=0.196 Sum_probs=33.1
Q ss_pred CcccccccccccccCceeEEEEecCcceehHHHHHHHhhcccCccccCCCCC
Q 007574 98 EGEYHCPVLNKVFTEFTHIVAVKTTGNVFCFEAIKELNIKTKNWKELLTDEP 149 (597)
Q Consensus 98 ~~~~~CPvt~k~ft~~t~~v~ik~~G~V~s~eai~~l~~k~k~~~~lv~~~~ 149 (597)
.-.|.|-||++.+... + +..|||-||.-|.-.=.. +.-.|-+|++.
T Consensus 194 ~IPF~C~iCKkdy~sp--v--vt~CGH~FC~~Cai~~y~--kg~~C~~Cgk~ 239 (259)
T COG5152 194 KIPFLCGICKKDYESP--V--VTECGHSFCSLCAIRKYQ--KGDECGVCGKA 239 (259)
T ss_pred CCceeehhchhhccch--h--hhhcchhHHHHHHHHHhc--cCCcceecchh
Confidence 3458999999999643 3 478999999987644222 33479999864
No 152
>KOG3993 consensus Transcription factor (contains Zn finger) [Transcription]
Probab=34.78 E-value=7.7 Score=42.67 Aligned_cols=80 Identities=18% Similarity=0.302 Sum_probs=50.8
Q ss_pred HHHhcCCCCCCCCCCCCCCccc-----cccccccCcccccccccccccCceeEEEEecCcceehHHHHHHHhhcccCccc
Q 007574 69 YIRKYGKHPVTGTPLKLEDLIP-----LTFHKNAEGEYHCPVLNKVFTEFTHIVAVKTTGNVFCFEAIKELNIKTKNWKE 143 (597)
Q Consensus 69 ~L~k~~~~Pvtg~~l~lkdLi~-----l~f~kn~~~~~~CPvt~k~ft~~t~~v~ik~~G~V~s~eai~~l~~k~k~~~~ 143 (597)
+.....+.||.|..+..-.+.. |--.+|.+|+|||=.|+..+-+-..+ +--.|-+++-. .++|
T Consensus 231 ~~de~t~spvlg~~ik~vEiteesr~~l~~i~n~iGdyiCqLCK~kYeD~F~L-AQHrC~RIV~v-----------EYrC 298 (500)
T KOG3993|consen 231 FEDEVTTSPVLGLKIKEVEITEESRAKLAGIPNVIGDYICQLCKEKYEDAFAL-AQHRCPRIVHV-----------EYRC 298 (500)
T ss_pred hhhhhccCccccceeeeecccchhhhhhccCcccHHHHHHHHHHHhhhhHHHH-hhccCCeeEEe-----------eecC
Confidence 5566677888887665333322 22356778999999999888773221 12234444432 3699
Q ss_pred cCCCCCCCCCCeeEecCCCCcchhc
Q 007574 144 LLTDEPFTKEDLITIQNPNALDTKV 168 (597)
Q Consensus 144 lv~~~~f~~~DII~Lqdp~~~~~~~ 168 (597)
+.|++.|.= |-||.+..
T Consensus 299 PEC~KVFsC--------PANLASHR 315 (500)
T KOG3993|consen 299 PECDKVFSC--------PANLASHR 315 (500)
T ss_pred CcccccccC--------chhhhhhh
Confidence 999998863 66766554
No 153
>PF14446 Prok-RING_1: Prokaryotic RING finger family 1
Probab=34.73 E-value=23 Score=28.22 Aligned_cols=19 Identities=21% Similarity=0.245 Sum_probs=13.7
Q ss_pred CccccCCCCCCCCCCeeEe
Q 007574 140 NWKELLTDEPFTKEDLITI 158 (597)
Q Consensus 140 ~~~~lv~~~~f~~~DII~L 158 (597)
..+|++|+++|+.+|-|++
T Consensus 5 ~~~C~~Cg~~~~~~dDiVv 23 (54)
T PF14446_consen 5 GCKCPVCGKKFKDGDDIVV 23 (54)
T ss_pred CccChhhCCcccCCCCEEE
Confidence 3589999999994444433
No 154
>KOG1002 consensus Nucleotide excision repair protein RAD16 [Replication, recombination and repair]
Probab=32.70 E-value=27 Score=39.65 Aligned_cols=53 Identities=17% Similarity=0.254 Sum_probs=40.8
Q ss_pred cCcccccccccccccCceeEEEEecCcceehHHHHHHHhhc---ccCccccCCCCCCCCC
Q 007574 97 AEGEYHCPVLNKVFTEFTHIVAVKTTGNVFCFEAIKELNIK---TKNWKELLTDEPFTKE 153 (597)
Q Consensus 97 ~~~~~~CPvt~k~ft~~t~~v~ik~~G~V~s~eai~~l~~k---~k~~~~lv~~~~f~~~ 153 (597)
..++..|-+|..+--+. ....|-|+||.-||+++... ..+..||+|..+++-+
T Consensus 533 nk~~~~C~lc~d~aed~----i~s~ChH~FCrlCi~eyv~~f~~~~nvtCP~C~i~LsiD 588 (791)
T KOG1002|consen 533 NKGEVECGLCHDPAEDY----IESSCHHKFCRLCIKEYVESFMENNNVTCPVCHIGLSID 588 (791)
T ss_pred ccCceeecccCChhhhh----HhhhhhHHHHHHHHHHHHHhhhcccCCCCcccccccccc
Confidence 35778999998776554 34679999999999987653 3468899999888654
No 155
>PF14835 zf-RING_6: zf-RING of BARD1-type protein; PDB: 1JM7_B.
Probab=32.34 E-value=14 Score=30.39 Aligned_cols=50 Identities=26% Similarity=0.461 Sum_probs=23.8
Q ss_pred ccccCCCCCCCCcee-cCCCCeeeHHhHHHHHHhcCCCCCCCCCCCCCCcccc
Q 007574 40 YCCALTFTPFEDPVC-TADGSVFELMSITPYIRKYGKHPVTGTPLKLEDLIPL 91 (597)
Q Consensus 40 ~~C~LSl~pl~~PV~-t~~G~ly~ke~Il~~L~k~~~~Pvtg~~l~lkdLi~l 91 (597)
-.|+.+..-|+.||+ ..-.|+|+..+|-..|.. ..|+-..|.-.+||.-+
T Consensus 8 LrCs~C~~~l~~pv~l~~CeH~fCs~Ci~~~~~~--~CPvC~~Paw~qD~~~N 58 (65)
T PF14835_consen 8 LRCSICFDILKEPVCLGGCEHIFCSSCIRDCIGS--ECPVCHTPAWIQDIQIN 58 (65)
T ss_dssp TS-SSS-S--SS-B---SSS--B-TTTGGGGTTT--B-SSS--B-S-SS----
T ss_pred cCCcHHHHHhcCCceeccCccHHHHHHhHHhcCC--CCCCcCChHHHHHHHhh
Confidence 469999999999998 455999999999776543 37877777777776544
No 156
>KOG1814 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=31.40 E-value=35 Score=37.68 Aligned_cols=50 Identities=14% Similarity=0.278 Sum_probs=36.3
Q ss_pred CCCCcccccccccc--------CcccccccccccccCceeEEEEecCcceehHHHHHHH
Q 007574 84 KLEDLIPLTFHKNA--------EGEYHCPVLNKVFTEFTHIVAVKTTGNVFCFEAIKEL 134 (597)
Q Consensus 84 ~lkdLi~l~f~kn~--------~~~~~CPvt~k~ft~~t~~v~ik~~G~V~s~eai~~l 134 (597)
++.||++.....+. ..-|+|-||+..+.+. +.+..-||+|||+..|++..
T Consensus 160 ~~~sl~~~Il~~deea~~~~F~~slf~C~ICf~e~~G~-~c~~~lpC~Hv~Ck~C~kdY 217 (445)
T KOG1814|consen 160 SIDSLKKEILQFDEEATLEKFVNSLFDCCICFEEQMGQ-HCFKFLPCSHVFCKSCLKDY 217 (445)
T ss_pred ChHHHHHHHHhhhHHHHHHHHHhhcccceeeehhhcCc-ceeeecccchHHHHHHHHHH
Confidence 45566665544332 2458999999999965 44557899999999998764
No 157
>KOG0802 consensus E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=30.90 E-value=27 Score=40.12 Aligned_cols=43 Identities=14% Similarity=0.277 Sum_probs=37.5
Q ss_pred CccccCCCCCCCC-----ceecCCCCeeeHHhHHHHHHhcCCCCCCCC
Q 007574 39 FYCCALTFTPFED-----PVCTADGSVFELMSITPYIRKYGKHPVTGT 81 (597)
Q Consensus 39 f~~C~LSl~pl~~-----PV~t~~G~ly~ke~Il~~L~k~~~~Pvtg~ 81 (597)
-+.|+||.+.|.. |-.-+.||+|.-.|+..|++...++|+..-
T Consensus 291 ~~~C~IC~e~l~~~~~~~~~rL~C~Hifh~~CL~~W~er~qtCP~CR~ 338 (543)
T KOG0802|consen 291 DELCIICLEELHSGHNITPKRLPCGHIFHDSCLRSWFERQQTCPTCRT 338 (543)
T ss_pred CCeeeeechhhccccccccceeecccchHHHHHHHHHHHhCcCCcchh
Confidence 5689999999998 566778999999999999999888887654
No 158
>KOG0825 consensus PHD Zn-finger protein [General function prediction only]
Probab=29.99 E-value=12 Score=44.14 Aligned_cols=38 Identities=16% Similarity=0.242 Sum_probs=21.9
Q ss_pred ccCCCCCCCCcee-cC--CCCeeeHHhHHHHHHhcCCCCCC
Q 007574 42 CALTFTPFEDPVC-TA--DGSVFELMSITPYIRKYGKHPVT 79 (597)
Q Consensus 42 C~LSl~pl~~PV~-t~--~G~ly~ke~Il~~L~k~~~~Pvt 79 (597)
|++|++-+.+=.+ ++ .||.||..||..|-+--.++|+.
T Consensus 126 CP~Ci~s~~DqL~~~~k~c~H~FC~~Ci~sWsR~aqTCPiD 166 (1134)
T KOG0825|consen 126 CPNCLKSCNDQLEESEKHTAHYFCEECVGSWSRCAQTCPVD 166 (1134)
T ss_pred hhHHHHHHHHHhhccccccccccHHHHhhhhhhhcccCchh
Confidence 5555555554433 22 26677777777776666666664
No 159
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=29.97 E-value=21 Score=36.02 Aligned_cols=56 Identities=16% Similarity=0.181 Sum_probs=0.0
Q ss_pred ccccccccccccC------ceeEEEEecCcceehHHHHHHHhhcccCccccCCCCCCCCCCeeEe
Q 007574 100 EYHCPVLNKVFTE------FTHIVAVKTTGNVFCFEAIKELNIKTKNWKELLTDEPFTKEDLITI 158 (597)
Q Consensus 100 ~~~CPvt~k~ft~------~t~~v~ik~~G~V~s~eai~~l~~k~k~~~~lv~~~~f~~~DII~L 158 (597)
.+.||||.++|+. ..+++-.-+-.+..=.. +.=+--.. |.||.|+=.|.+.|.=.|
T Consensus 5 ~~~CPvC~~~F~~~~vrs~~~r~~~~d~D~~~~Y~~-vnP~~Y~V--~vCP~CgyA~~~~~F~~l 66 (214)
T PF09986_consen 5 KITCPVCGKEFKTKKVRSGKIRVIRRDSDFCPRYKG-VNPLFYEV--WVCPHCGYAAFEEDFEKL 66 (214)
T ss_pred ceECCCCCCeeeeeEEEcCCceEeeecCCCccccCC-CCCeeeeE--EECCCCCCcccccccccC
No 160
>PHA02768 hypothetical protein; Provisional
Probab=29.66 E-value=24 Score=28.18 Aligned_cols=40 Identities=15% Similarity=0.320 Sum_probs=26.1
Q ss_pred ccccccccccccCceeEEEEecCcceehHHHHHHHhhcccCccccCCCCCCCCC
Q 007574 100 EYHCPVLNKVFTEFTHIVAVKTTGNVFCFEAIKELNIKTKNWKELLTDEPFTKE 153 (597)
Q Consensus 100 ~~~CPvt~k~ft~~t~~v~ik~~G~V~s~eai~~l~~k~k~~~~lv~~~~f~~~ 153 (597)
.|.||.|+|.|+..+++. . -+.+=.++.+|..|+.-|.+.
T Consensus 5 ~y~C~~CGK~Fs~~~~L~-----~---------H~r~H~k~~kc~~C~k~f~~~ 44 (55)
T PHA02768 5 GYECPICGEIYIKRKSMI-----T---------HLRKHNTNLKLSNCKRISLRT 44 (55)
T ss_pred ccCcchhCCeeccHHHHH-----H---------HHHhcCCcccCCcccceeccc
Confidence 478999999998654431 1 111112456899999988743
No 161
>KOG0311 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=29.47 E-value=11 Score=40.67 Aligned_cols=50 Identities=16% Similarity=0.253 Sum_probs=38.3
Q ss_pred CcccccccccccccCceeEEEEecCcceehHHHHHHHhhcccCccccCCCCCCC
Q 007574 98 EGEYHCPVLNKVFTEFTHIVAVKTTGNVFCFEAIKELNIKTKNWKELLTDEPFT 151 (597)
Q Consensus 98 ~~~~~CPvt~k~ft~~t~~v~ik~~G~V~s~eai~~l~~k~k~~~~lv~~~~f~ 151 (597)
..+++||||.-.+... ...+.|+|-||.+||-.-+. ..+--||-|-+.+-
T Consensus 41 ~~~v~c~icl~llk~t---mttkeClhrfc~~ci~~a~r-~gn~ecptcRk~l~ 90 (381)
T KOG0311|consen 41 DIQVICPICLSLLKKT---MTTKECLHRFCFDCIWKALR-SGNNECPTCRKKLV 90 (381)
T ss_pred hhhhccHHHHHHHHhh---cccHHHHHHHHHHHHHHHHH-hcCCCCchHHhhcc
Confidence 4679999998877754 33578999999999987544 34567999988774
No 162
>COG5243 HRD1 HRD ubiquitin ligase complex, ER membrane component [Posttranslational modification, protein turnover, chaperones]
Probab=28.60 E-value=72 Score=34.88 Aligned_cols=45 Identities=13% Similarity=0.371 Sum_probs=34.8
Q ss_pred ccccCCCCCCCCc-------------eecCCCCeeeHHhHHHHHHhcCCCCCCCCCCC
Q 007574 40 YCCALTFTPFEDP-------------VCTADGSVFELMSITPYIRKYGKHPVTGTPLK 84 (597)
Q Consensus 40 ~~C~LSl~pl~~P-------------V~t~~G~ly~ke~Il~~L~k~~~~Pvtg~~l~ 84 (597)
..|.||..-|-+| =--|.||++-.+|+-.|++.+.++|+.+.|+-
T Consensus 288 ~~C~ICmde~~h~~~~~~~~~~~~~pKrLpCGHilHl~CLknW~ERqQTCPICr~p~i 345 (491)
T COG5243 288 RTCTICMDEMFHPDHEPLPRGLDMTPKRLPCGHILHLHCLKNWLERQQTCPICRRPVI 345 (491)
T ss_pred CeEEEecccccCCCCccCcccccCCcccccccceeeHHHHHHHHHhccCCCcccCccc
Confidence 4588887774433 22345999999999999999999999887643
No 163
>PF13132 DUF3950: Domain of unknown function (DUF3950)
Probab=28.44 E-value=13 Score=25.90 Aligned_cols=7 Identities=43% Similarity=1.056 Sum_probs=5.8
Q ss_pred CCCCCCC
Q 007574 591 FKDFSGW 597 (597)
Q Consensus 591 f~~f~~w 597 (597)
=||||+|
T Consensus 14 ~~NFSaW 20 (30)
T PF13132_consen 14 SGNFSAW 20 (30)
T ss_pred CcChHHH
Confidence 4699998
No 164
>COG5220 TFB3 Cdk activating kinase (CAK)/RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit TFB3 [Cell division and chromosome partitioning / Transcription / DNA replication, recombination, and repair]
Probab=28.15 E-value=20 Score=36.78 Aligned_cols=52 Identities=12% Similarity=0.170 Sum_probs=37.9
Q ss_pred cccccccc--ccccCceeEEEEecCcceehHHHHHHHhhcccCcccc--CCCCCCCC
Q 007574 100 EYHCPVLN--KVFTEFTHIVAVKTTGNVFCFEAIKELNIKTKNWKEL--LTDEPFTK 152 (597)
Q Consensus 100 ~~~CPvt~--k~ft~~t~~v~ik~~G~V~s~eai~~l~~k~k~~~~l--v~~~~f~~ 152 (597)
+-.||||+ .-++.+.+|...--|=|-+|+.|++++ .....-.|| -|++-+.+
T Consensus 10 d~~CPvCksDrYLnPdik~linPECyHrmCESCvdRI-Fs~GpAqCP~~gC~kILRK 65 (314)
T COG5220 10 DRRCPVCKSDRYLNPDIKILINPECYHRMCESCVDRI-FSRGPAQCPYKGCGKILRK 65 (314)
T ss_pred cccCCccccccccCCCeEEEECHHHHHHHHHHHHHHH-hcCCCCCCCCccHHHHHHH
Confidence 35899987 457777776643339999999999995 445566888 88864443
No 165
>COG5152 Uncharacterized conserved protein, contains RING and CCCH-type Zn-fingers [General function prediction only]
Probab=27.36 E-value=24 Score=35.28 Aligned_cols=42 Identities=26% Similarity=0.421 Sum_probs=33.4
Q ss_pred CCCccccCCCCCCCCceecCCCCeeeHHhHHHHHHhcCCCCCC
Q 007574 37 LPFYCCALTFTPFEDPVCTADGSVFELMSITPYIRKYGKHPVT 79 (597)
Q Consensus 37 lpf~~C~LSl~pl~~PV~t~~G~ly~ke~Il~~L~k~~~~Pvt 79 (597)
+|| .|-||..-++.||++.-||.||-.|.+.-.++...+-+.
T Consensus 195 IPF-~C~iCKkdy~spvvt~CGH~FC~~Cai~~y~kg~~C~~C 236 (259)
T COG5152 195 IPF-LCGICKKDYESPVVTECGHSFCSLCAIRKYQKGDECGVC 236 (259)
T ss_pred Cce-eehhchhhccchhhhhcchhHHHHHHHHHhccCCcceec
Confidence 555 588999999999999999999999888776654444333
No 166
>PF04423 Rad50_zn_hook: Rad50 zinc hook motif; InterPro: IPR007517 The Mre11 complex (Mre11 Rad50 Nbs1) is central to chromosomal maintenance and functions in homologous recombination, telomere maintenance and sister chromatid association. The Rad50 coiled-coil region contains a dimer interface at the apex of the coiled coils in which pairs of conserved Cys-X-X-Cys motifs form interlocking hooks that bind one Zn ion. This alignment includes the zinc hook motif and a short stretch of coiled-coil on either side.; GO: 0004518 nuclease activity, 0005524 ATP binding, 0008270 zinc ion binding, 0006281 DNA repair; PDB: 1L8D_B.
Probab=27.08 E-value=25 Score=27.35 Aligned_cols=23 Identities=26% Similarity=0.232 Sum_probs=10.8
Q ss_pred HHHHHHhhcccCccccCCCCCCCCC
Q 007574 129 EAIKELNIKTKNWKELLTDEPFTKE 153 (597)
Q Consensus 129 eai~~l~~k~k~~~~lv~~~~f~~~ 153 (597)
+.+++|.... -.||+|+.+|+++
T Consensus 11 k~i~~l~~~~--~~CPlC~r~l~~e 33 (54)
T PF04423_consen 11 KYIEELKEAK--GCCPLCGRPLDEE 33 (54)
T ss_dssp HHHHHHTT-S--EE-TTT--EE-HH
T ss_pred HHHHHHhcCC--CcCCCCCCCCCHH
Confidence 3455554322 2899999998753
No 167
>PRK00464 nrdR transcriptional regulator NrdR; Validated
Probab=26.95 E-value=26 Score=33.73 Aligned_cols=40 Identities=20% Similarity=0.242 Sum_probs=27.3
Q ss_pred cccccccccccCceeEEEEecCcceehHHHHHHHhhcccCccccCCCCCCCC
Q 007574 101 YHCPVLNKVFTEFTHIVAVKTTGNVFCFEAIKELNIKTKNWKELLTDEPFTK 152 (597)
Q Consensus 101 ~~CPvt~k~ft~~t~~v~ik~~G~V~s~eai~~l~~k~k~~~~lv~~~~f~~ 152 (597)
+.||.|+-+++.-..-.++.+ ||++... .+|+.|+..|+-
T Consensus 1 m~cp~c~~~~~~~~~s~~~~~-~~~~~~~-----------~~c~~c~~~f~~ 40 (154)
T PRK00464 1 MRCPFCGHPDTRVIDSRPAED-GNAIRRR-----------RECLACGKRFTT 40 (154)
T ss_pred CcCCCCCCCCCEeEeccccCC-CCceeee-----------eeccccCCcceE
Confidence 479999988764333344446 8876522 379999999874
No 168
>COG1548 Predicted transcriptional regulator/sugar kinase [Transcription / Carbohydrate transport and metabolism]
Probab=26.70 E-value=38 Score=35.45 Aligned_cols=58 Identities=31% Similarity=0.530 Sum_probs=40.4
Q ss_pred EecCcceehHHHHH-HHhhcccCc-------------cccCCCCCCCCCCeeEecCCCCcchhccchhhhhhcC
Q 007574 119 VKTTGNVFCFEAIK-ELNIKTKNW-------------KELLTDEPFTKEDLITIQNPNALDTKVTLEFDHVKKG 178 (597)
Q Consensus 119 ik~~G~V~s~eai~-~l~~k~k~~-------------~~lv~~~~f~~~DII~Lqdp~~~~~~~~~~f~h~k~~ 178 (597)
+--.||+.+.++.+ -+++.+.|| -|+.-|.--+-.|||+|.|-.....++ .|.-|++|
T Consensus 94 v~~~G~~~ssEa~~~~~~vAAaNW~Ata~~~~e~~~dsci~VD~GSTTtDIIPi~~ge~~ag~t--DlERL~~g 165 (330)
T COG1548 94 VDVNGNFLSSEALKNPREVAAANWVATARFLAEEIKDSCILVDMGSTTTDIIPIKDGEAAAGKT--DLERLKNG 165 (330)
T ss_pred EeccCcCcChhHhcCHHHHHHhhhHHHHHHHHHhcCCceEEEecCCcccceEeecchhhhhccc--hHHHHhcC
Confidence 44568888877777 345555566 388888888999999999986444333 45555555
No 169
>KOG4628 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=26.25 E-value=46 Score=36.14 Aligned_cols=46 Identities=9% Similarity=0.091 Sum_probs=37.1
Q ss_pred cccccccccccCceeEEEEecCcceehHHHHHHHhhcccCccccCCCC
Q 007574 101 YHCPVLNKVFTEFTHIVAVKTTGNVFCFEAIKELNIKTKNWKELLTDE 148 (597)
Q Consensus 101 ~~CPvt~k~ft~~t~~v~ik~~G~V~s~eai~~l~~k~k~~~~lv~~~ 148 (597)
..|.||...|...-++. +-||+|.|-..||+--....+ -.||+|-.
T Consensus 230 ~~CaIClEdY~~GdklR-iLPC~H~FH~~CIDpWL~~~r-~~CPvCK~ 275 (348)
T KOG4628|consen 230 DTCAICLEDYEKGDKLR-ILPCSHKFHVNCIDPWLTQTR-TFCPVCKR 275 (348)
T ss_pred ceEEEeecccccCCeee-EecCCCchhhccchhhHhhcC-ccCCCCCC
Confidence 59999999999887776 489999999999998544332 24999954
No 170
>KOG2462 consensus C2H2-type Zn-finger protein [Transcription]
Probab=25.85 E-value=51 Score=34.56 Aligned_cols=83 Identities=18% Similarity=0.267 Sum_probs=49.4
Q ss_pred CCeeeHHhHHH-HHHhcC---CCCCCCCCCCCCCccccccccc-cCcccccccccccccCceeEEEEecCcceehHHHHH
Q 007574 58 GSVFELMSITP-YIRKYG---KHPVTGTPLKLEDLIPLTFHKN-AEGEYHCPVLNKVFTEFTHIVAVKTTGNVFCFEAIK 132 (597)
Q Consensus 58 G~ly~ke~Il~-~L~k~~---~~Pvtg~~l~lkdLi~l~f~kn-~~~~~~CPvt~k~ft~~t~~v~ik~~G~V~s~eai~ 132 (597)
|.+|=..-.|. +|+.|. .+++-|+.++.-=|+.=|+--. .+-.|.||+|.|.|.+.+.+ .|=-
T Consensus 168 ~K~YvSmpALkMHirTH~l~c~C~iCGKaFSRPWLLQGHiRTHTGEKPF~C~hC~kAFADRSNL------------RAHm 235 (279)
T KOG2462|consen 168 GKVYVSMPALKMHIRTHTLPCECGICGKAFSRPWLLQGHIRTHTGEKPFSCPHCGKAFADRSNL------------RAHM 235 (279)
T ss_pred CceeeehHHHhhHhhccCCCcccccccccccchHHhhcccccccCCCCccCCcccchhcchHHH------------HHHH
Confidence 77777655554 555555 2567777666555544444222 24469999999999985432 1111
Q ss_pred HHhhcccCccccCCCCCCCC
Q 007574 133 ELNIKTKNWKELLTDEPFTK 152 (597)
Q Consensus 133 ~l~~k~k~~~~lv~~~~f~~ 152 (597)
|---..|++.|..|++.|.+
T Consensus 236 QTHS~~K~~qC~~C~KsFsl 255 (279)
T KOG2462|consen 236 QTHSDVKKHQCPRCGKSFAL 255 (279)
T ss_pred HhhcCCccccCcchhhHHHH
Confidence 11123456788888887764
No 171
>PF00301 Rubredoxin: Rubredoxin; InterPro: IPR004039 Rubredoxin is a low molecular weight iron-containing bacterial protein involved in electron transfer [, ], sometimes replacing ferredoxin as an electron carrier []. The 3-D structures of a number of rubredoxins have been solved [, ]. The fold belongs to the alpha+beta class, with 2 alpha-helices and 2-3 beta-strands. Its active site contains an iron ion which is co-ordinated by the sulphurs of four conserved cysteine residues forming an almost regular tetrahedron. The conserved cysteines reside on two loops, which are the most conserved regions of the protein. In addition, a ring of acidic residues in the proximity of the [Fe(Cys)4] centre is also well-conserved []. ; GO: 0009055 electron carrier activity, 0046872 metal ion binding; PDB: 2RDV_C 1RDV_A 1S24_A 1T9O_B 1B2J_A 1SMW_A 2PVE_B 1BFY_A 1T9P_C 1C09_C ....
Probab=25.02 E-value=18 Score=27.94 Aligned_cols=12 Identities=17% Similarity=0.529 Sum_probs=7.5
Q ss_pred ccCccccCCCCC
Q 007574 138 TKNWKELLTDEP 149 (597)
Q Consensus 138 ~k~~~~lv~~~~ 149 (597)
+..|+||+|+.+
T Consensus 32 p~~w~CP~C~a~ 43 (47)
T PF00301_consen 32 PDDWVCPVCGAP 43 (47)
T ss_dssp -TT-B-TTTSSB
T ss_pred CCCCcCcCCCCc
Confidence 568999999864
No 172
>PRK11088 rrmA 23S rRNA methyltransferase A; Provisional
Probab=23.74 E-value=42 Score=34.60 Aligned_cols=25 Identities=20% Similarity=0.480 Sum_probs=20.7
Q ss_pred ccccCCCCCCC---CceecCCCCeeeHH
Q 007574 40 YCCALTFTPFE---DPVCTADGSVFELM 64 (597)
Q Consensus 40 ~~C~LSl~pl~---~PV~t~~G~ly~ke 64 (597)
..||+|.+||. ..++|..||.||..
T Consensus 3 ~~CP~C~~~l~~~~~~~~C~~~h~fd~a 30 (272)
T PRK11088 3 YQCPLCHQPLTLEENSWICPQNHQFDCA 30 (272)
T ss_pred ccCCCCCcchhcCCCEEEcCCCCCCccc
Confidence 46999999996 45889999999843
No 173
>PF10537 WAC_Acf1_DNA_bd: ATP-utilising chromatin assembly and remodelling N-terminal; InterPro: IPR013136 ACF (for ATP-utilising chromatin assembly and remodeling factor) is a chromatin-remodeling complex that catalyzes the ATP-dependent assembly of periodic nucleosome arrays. This reaction utilises the energy of ATP hydrolysis by ISWI, the smaller of the two subunits of ACF. Acf1, the large subunit of ACF, is essential for the full activity of the complex. The WAC (WSTF/Acf1/cbp146) domain is an ~110-residue module present at the N-termini of Acf1-related proteins in a variety of organisms. It is found in association with other domains such as the bromodomain, the PHD-type zinc finger, DDT or WAKS. The DNA-binding region of Acf1 includes the WAC domain, which is necessary for the efficient binding of ACF complex to DNA. It seems probable that the WAC domain will be involved in DNA binding in other related factors [, ]. Some proteins known to contain a WAC domain are the Drosophila melanogaster (Fruit fly) ATP-dependent chromatin assembly factor large subunit Acf1, human WSTF (Williams syndrome transcription factor), mouse cbp146, yeast imitation switch two complex protein 1 (ITC1 or YGL133w), and yeast protein YPL216w.
Probab=22.94 E-value=64 Score=28.90 Aligned_cols=35 Identities=17% Similarity=0.465 Sum_probs=25.4
Q ss_pred ccccccccccccCceeEEEEecCcceehHHHHHHHhh-cccCccccCCCC
Q 007574 100 EYHCPVLNKVFTEFTHIVAVKTTGNVFCFEAIKELNI-KTKNWKELLTDE 148 (597)
Q Consensus 100 ~~~CPvt~k~ft~~t~~v~ik~~G~V~s~eai~~l~~-k~k~~~~lv~~~ 148 (597)
-|+||.|+..|++. .+-+++++. ...-|-|-+||.
T Consensus 3 Vf~i~~T~EiF~dY--------------e~Y~~R~~~y~~~vwtC~~TGk 38 (102)
T PF10537_consen 3 VFYIPFTGEIFRDY--------------EEYLKRMILYNQRVWTCEITGK 38 (102)
T ss_pred eEEeCCCCcccCCH--------------HHHHHHHHHHhCCeeEEecCCC
Confidence 48899999999876 444555443 456799998886
No 174
>COG5533 UBP5 Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones]
Probab=22.31 E-value=43 Score=35.88 Aligned_cols=61 Identities=13% Similarity=0.158 Sum_probs=35.6
Q ss_pred ccccccccccccc---CceeEE-EEecCcceehHHHHHHHhhc-----ccCccccCCCCCCCCCCeeEec
Q 007574 99 GEYHCPVLNKVFT---EFTHIV-AVKTTGNVFCFEAIKELNIK-----TKNWKELLTDEPFTKEDLITIQ 159 (597)
Q Consensus 99 ~~~~CPvt~k~ft---~~t~~v-~ik~~G~V~s~eai~~l~~k-----~k~~~~lv~~~~f~~~DII~Lq 159 (597)
....|-+|...-+ ..+.+. -+--.-+|--.+|+.++... ...|+||+|+.+=.....|.|-
T Consensus 234 srlqC~~C~~TStT~a~fs~l~vp~~~v~~~~l~eC~~~f~~~e~L~g~d~W~CpkC~~k~ss~K~~~I~ 303 (415)
T COG5533 234 SRLQCEACNYTSTTIAMFSTLLVPPYEVVQLGLQECIDRFYEEEKLEGKDAWRCPKCGRKESSRKRMEIL 303 (415)
T ss_pred hhhhhhhcCCceeEEeccceeeeccchheeecHHHHHHHhhhHHhhcCcccccCchhcccccchheEEEE
Confidence 4456666654433 333332 12223444488999887643 2469999999877655555543
No 175
>PF13894 zf-C2H2_4: C2H2-type zinc finger; PDB: 2ELX_A 2EPP_A 2DLK_A 1X6H_A 2EOU_A 2EMB_A 2GQJ_A 2CSH_A 2WBT_B 2ELM_A ....
Probab=21.81 E-value=41 Score=20.53 Aligned_cols=12 Identities=33% Similarity=1.016 Sum_probs=6.0
Q ss_pred cccccccccccC
Q 007574 101 YHCPVLNKVFTE 112 (597)
Q Consensus 101 ~~CPvt~k~ft~ 112 (597)
|.||+|.+.|..
T Consensus 1 ~~C~~C~~~~~~ 12 (24)
T PF13894_consen 1 FQCPICGKSFRS 12 (24)
T ss_dssp EE-SSTS-EESS
T ss_pred CCCcCCCCcCCc
Confidence 456666666654
No 176
>KOG1703 consensus Adaptor protein Enigma and related PDZ-LIM proteins [Signal transduction mechanisms; Cytoskeleton]
Probab=21.65 E-value=70 Score=36.14 Aligned_cols=97 Identities=15% Similarity=0.190 Sum_probs=64.3
Q ss_pred ccccCCCCCCCCce-ecCCCCeeeHHhHHHHHHhcC---CCCCCCCCCCCCCccccccccccCcccccccccccccCcee
Q 007574 40 YCCALTFTPFEDPV-CTADGSVFELMSITPYIRKYG---KHPVTGTPLKLEDLIPLTFHKNAEGEYHCPVLNKVFTEFTH 115 (597)
Q Consensus 40 ~~C~LSl~pl~~PV-~t~~G~ly~ke~Il~~L~k~~---~~Pvtg~~l~lkdLi~l~f~kn~~~~~~CPvt~k~ft~~t~ 115 (597)
..|..+...+.+.- ...+|++|+.++..+|+.-.. ..|+.++.|..- .-.|+.+ .|.|-.|.+.|.+.
T Consensus 331 ~~c~~~~~~~~~~~~~~~~g~~~c~~~~~~~~~p~C~~C~~~i~~~~v~a~---~~~wH~~---cf~C~~C~~~~~~~-- 402 (479)
T KOG1703|consen 331 FSCEVCAIVILDGGPRELDGKILCHECFHAPFRPNCKRCLLPILEEGVCAL---GRLWHPE---CFVCADCGKPLKNS-- 402 (479)
T ss_pred eeeccccccccCCCccccCCCccHHHHHHHhhCccccccCCchHHhHhhhc---cCeechh---ceeeecccCCCCCC--
Confidence 34555555555543 356799999999999996443 246666655443 3334443 57888887777765
Q ss_pred EEEEecCcceehHHHHHHHhhcccCccccCCCCC
Q 007574 116 IVAVKTTGNVFCFEAIKELNIKTKNWKELLTDEP 149 (597)
Q Consensus 116 ~v~ik~~G~V~s~eai~~l~~k~k~~~~lv~~~~ 149 (597)
.+....|..|++.+++++.. .+|..|..+
T Consensus 403 -~~~~~~~~pyce~~~~~~~~----~~~~~~~~p 431 (479)
T KOG1703|consen 403 -SFFESDGEPYCEDHYKKLFT----TKCDYCKKP 431 (479)
T ss_pred -cccccCCccchhhhHhhhcc----ccchhccch
Confidence 44567899999999998742 256666554
No 177
>COG5194 APC11 Component of SCF ubiquitin ligase and anaphase-promoting complex [Posttranslational modification, protein turnover, chaperones / Cell division and chromosome partitioning]
Probab=21.29 E-value=63 Score=27.87 Aligned_cols=47 Identities=15% Similarity=0.209 Sum_probs=32.9
Q ss_pred CCccccCCCCCCCCcee--c--------------CCCCeeeHHhHHHHHHhcCCCCCCCCCCC
Q 007574 38 PFYCCALTFTPFEDPVC--T--------------ADGSVFELMSITPYIRKYGKHPVTGTPLK 84 (597)
Q Consensus 38 pf~~C~LSl~pl~~PV~--t--------------~~G~ly~ke~Il~~L~k~~~~Pvtg~~l~ 84 (597)
|-+.|+|+-.++.++.. . ---|.|-.-+|..||...+..|+..++..
T Consensus 19 ~id~CaICRnhim~~C~eCq~~~~~~~eC~v~wG~CnHaFH~HCI~rWL~Tk~~CPld~q~w~ 81 (88)
T COG5194 19 PIDVCAICRNHIMGTCPECQFGMTPGDECPVVWGVCNHAFHDHCIYRWLDTKGVCPLDRQTWV 81 (88)
T ss_pred ccchhhhhhccccCcCcccccCCCCCCcceEEEEecchHHHHHHHHHHHhhCCCCCCCCceeE
Confidence 44666666666655432 1 12478889999999999999998876543
No 178
>KOG1001 consensus Helicase-like transcription factor HLTF/DNA helicase RAD5, DEAD-box superfamily [Transcription; Replication, recombination and repair]
Probab=21.17 E-value=24 Score=41.64 Aligned_cols=52 Identities=17% Similarity=0.326 Sum_probs=39.8
Q ss_pred cccccccccccCceeEEEEecCcceehHHHHHHHhhcccCccccCCCCCCCCCCeeE
Q 007574 101 YHCPVLNKVFTEFTHIVAVKTTGNVFCFEAIKELNIKTKNWKELLTDEPFTKEDLIT 157 (597)
Q Consensus 101 ~~CPvt~k~ft~~t~~v~ik~~G~V~s~eai~~l~~k~k~~~~lv~~~~f~~~DII~ 157 (597)
+.|++|-. . .-+.|-.|||++|.+|+.+...-..+..|++|-..+..++++.
T Consensus 455 ~~c~ic~~----~-~~~~it~c~h~~c~~c~~~~i~~~~~~~~~~cr~~l~~~~l~s 506 (674)
T KOG1001|consen 455 HWCHICCD----L-DSFFITRCGHDFCVECLKKSIQQSENAPCPLCRNVLKEKKLLS 506 (674)
T ss_pred cccccccc----c-ccceeecccchHHHHHHHhccccccCCCCcHHHHHHHHHHHhh
Confidence 78999877 2 2245789999999999998765555557999988777766654
No 179
>PF12861 zf-Apc11: Anaphase-promoting complex subunit 11 RING-H2 finger
Probab=20.22 E-value=90 Score=27.17 Aligned_cols=52 Identities=12% Similarity=0.132 Sum_probs=34.6
Q ss_pred ccccccccccccC----------ceeEEEEecCcceehHHHHHHHhhc-ccCccccCCCCCCCC
Q 007574 100 EYHCPVLNKVFTE----------FTHIVAVKTTGNVFCFEAIKELNIK-TKNWKELLTDEPFTK 152 (597)
Q Consensus 100 ~~~CPvt~k~ft~----------~t~~v~ik~~G~V~s~eai~~l~~k-~k~~~~lv~~~~f~~ 152 (597)
+=.|+|+...|.+ .-.+| +-.|+|.|-.-||.+-... ..+-.||.|-.+|.-
T Consensus 21 dd~CgICr~~fdg~Cp~Ck~Pgd~Cplv-~g~C~H~FH~hCI~kWl~~~~~~~~CPmCR~~w~~ 83 (85)
T PF12861_consen 21 DDVCGICRMPFDGCCPDCKFPGDDCPLV-WGKCSHNFHMHCILKWLSTQSSKGQCPMCRQPWKF 83 (85)
T ss_pred CCceeeEecccccCCCCccCCCCCCcee-eccCccHHHHHHHHHHHccccCCCCCCCcCCeeee
Confidence 3345555555543 33444 6779999999999885432 234689999887753
Done!