Query 007574
Match_columns 597
No_of_seqs 445 out of 2182
Neff 6.0
Searched_HMMs 29240
Date Mon Mar 25 05:10:00 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007574.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/007574hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1zkc_A Peptidyl-prolyl CIS-tra 100.0 3.5E-51 1.2E-55 399.8 20.6 175 343-517 14-189 (197)
2 3bo7_A Peptidyl-prolyl CIS-tra 100.0 3.4E-51 1.2E-55 402.0 20.1 176 344-519 2-189 (201)
3 2ok3_A Peptidyl-prolyl CIS-tra 100.0 1.5E-49 5.2E-54 377.8 19.5 159 350-508 2-161 (161)
4 2poe_A Cyclophilin-like protei 100.0 2E-49 7E-54 384.5 19.6 166 346-511 14-183 (185)
5 2b71_A Cyclophilin-like protei 100.0 5.5E-48 1.9E-52 377.1 18.8 159 347-505 37-195 (196)
6 2x7k_A Peptidyl-prolyl CIS-tra 100.0 1.8E-47 6E-52 365.1 19.0 156 347-502 10-165 (166)
7 2fu0_A Cyclophilin, putative; 100.0 1.9E-47 6.5E-52 362.9 18.7 155 348-502 5-159 (160)
8 3bkp_A Cyclophilin; malaria, i 100.0 1.2E-47 4.1E-52 383.7 17.2 168 344-512 17-202 (232)
9 2hq6_A Serologically defined c 100.0 3.2E-47 1.1E-51 369.0 19.5 163 345-508 21-185 (185)
10 2a2n_A Peptidylprolyl isomeras 100.0 5.3E-47 1.8E-51 364.9 19.2 156 346-501 19-175 (176)
11 2k7n_A Peptidyl-prolyl CIS-tra 100.0 1.2E-46 4.1E-51 369.1 18.0 162 347-508 10-171 (203)
12 3ich_A Peptidyl-prolyl CIS-tra 100.0 2.1E-46 7.3E-51 364.2 18.3 162 348-510 17-187 (188)
13 1w74_A Peptidyl-prolyl CIS-tra 100.0 2.1E-45 7.1E-50 357.8 19.2 155 345-502 20-191 (191)
14 2wfi_A Peptidyl-prolyl CIS-tra 100.0 5.5E-45 1.9E-49 351.9 20.7 155 347-502 10-179 (179)
15 1a58_A Cyclophilin; isomerase, 100.0 5.5E-45 1.9E-49 351.4 20.3 155 348-503 8-177 (177)
16 1mzw_A Cyclophilin H, U-snRNP- 100.0 5E-45 1.7E-49 351.6 18.8 147 355-502 22-177 (177)
17 2he9_A NK-tumor recognition pr 100.0 1.7E-44 5.8E-49 351.8 20.4 156 347-503 20-190 (192)
18 2cmt_A Peptidyl-prolyl CIS-tra 100.0 2.1E-44 7.2E-49 345.7 20.1 147 355-503 22-172 (172)
19 2haq_A Cyclophilin; rotamase, 100.0 1.4E-44 5E-49 346.6 18.6 154 347-502 12-172 (172)
20 2r99_A Peptidyl-prolyl CIS-tra 100.0 3.3E-44 1.1E-48 344.7 20.3 154 348-503 13-173 (173)
21 2igv_A Peptidyl-prolyl CIS-tra 100.0 2.9E-44 1E-48 345.1 19.8 147 355-503 15-172 (173)
22 2z6w_A Peptidyl-prolyl CIS-tra 100.0 4.3E-44 1.5E-48 341.5 20.1 153 348-502 5-164 (165)
23 1qng_A Peptidyl-prolyl CIS-tra 100.0 2.7E-44 9.3E-49 344.4 18.8 146 355-502 15-170 (170)
24 4fru_A Cyclophilin B, peptidyl 100.0 2.3E-44 8E-49 349.4 17.9 159 348-507 14-181 (185)
25 3pmp_A Cyclophilin A; peptidyl 100.0 6E-44 2E-48 340.3 20.3 147 355-503 14-164 (164)
26 2poy_A Peptidyl-prolyl CIS-tra 100.0 1.3E-43 4.6E-48 343.8 18.8 152 348-501 21-186 (186)
27 2c3b_A Ppiase, cyclophilin; is 100.0 2.6E-44 8.8E-49 345.1 12.0 149 353-502 17-172 (172)
28 3s6m_A Peptidyl-prolyl CIS-tra 100.0 2E-43 6.7E-48 337.7 16.5 151 349-502 4-167 (167)
29 2ose_A Probable peptidyl-proly 100.0 7.9E-44 2.7E-48 356.7 14.3 152 355-509 26-213 (234)
30 1lop_A Cyclophilin A; rotamase 100.0 1.1E-43 3.8E-48 338.4 13.8 149 351-502 2-163 (164)
31 1z81_A Cyclophilin; structural 100.0 3.4E-43 1.2E-47 350.3 17.7 147 355-502 71-229 (229)
32 3k2c_A Peptidyl-prolyl CIS-tra 100.0 1.8E-42 6.2E-47 337.9 20.6 155 347-503 28-191 (193)
33 3rdd_A Peptidyl-prolyl CIS-tra 100.0 1.2E-42 4.2E-47 336.8 18.9 147 355-503 34-184 (184)
34 1v9t_A Cyclophilin B; beta bar 100.0 6.6E-43 2.2E-47 333.7 16.2 153 347-502 3-165 (166)
35 1ihg_A Cyclophilin 40; ppiase 100.0 4.5E-41 1.5E-45 356.8 19.0 154 350-505 17-187 (370)
36 3rfy_A Peptidyl-prolyl CIS-tra 100.0 2E-36 6.7E-41 319.3 11.2 147 346-504 168-356 (369)
37 2bay_A PRE-mRNA splicing facto 99.4 3.9E-14 1.3E-18 113.1 4.5 56 40-95 4-60 (61)
38 2kr4_A Ubiquitin conjugation f 99.1 2.7E-11 9.3E-16 102.6 4.3 70 33-102 7-77 (85)
39 1wgm_A Ubiquitin conjugation f 99.1 3.6E-11 1.2E-15 104.7 4.8 71 32-102 14-86 (98)
40 4ap4_A E3 ubiquitin ligase RNF 99.1 1.1E-10 3.7E-15 105.0 6.3 115 39-158 7-131 (133)
41 2kre_A Ubiquitin conjugation f 99.1 5.4E-11 1.9E-15 103.9 3.9 69 34-102 23-92 (100)
42 2f42_A STIP1 homology and U-bo 98.9 2.8E-10 9.7E-15 109.4 3.0 66 37-102 104-170 (179)
43 2yu4_A E3 SUMO-protein ligase 98.8 1.6E-09 5.4E-14 93.3 2.3 64 38-101 6-79 (94)
44 2c2l_A CHIP, carboxy terminus 98.7 8.3E-09 2.8E-13 103.9 4.0 66 37-102 206-272 (281)
45 1t1h_A Gspef-atpub14, armadill 98.4 2.1E-07 7.1E-12 76.5 4.7 64 38-101 7-71 (78)
46 3m62_A Ubiquitin conjugation f 98.4 8.8E-08 3E-12 111.4 2.5 67 37-103 889-956 (968)
47 2bay_A PRE-mRNA splicing facto 98.1 1.7E-06 5.7E-11 68.7 4.2 56 100-160 3-58 (61)
48 1g25_A CDK-activating kinase a 97.9 7.4E-06 2.5E-10 64.8 4.5 59 99-158 2-61 (65)
49 3htk_C E3 SUMO-protein ligase 97.8 2.7E-06 9.3E-11 85.9 0.1 56 38-93 180-240 (267)
50 2kre_A Ubiquitin conjugation f 97.5 9.8E-05 3.4E-09 64.1 5.4 54 98-157 27-80 (100)
51 1wgm_A Ubiquitin conjugation f 97.5 0.0001 3.6E-09 63.7 5.3 54 98-157 20-74 (98)
52 2xeu_A Ring finger protein 4; 97.5 8.3E-05 2.8E-09 57.9 4.2 58 99-158 2-62 (64)
53 2kr4_A Ubiquitin conjugation f 97.5 9.4E-05 3.2E-09 62.2 4.6 54 98-157 12-65 (85)
54 2ecw_A Tripartite motif-contai 97.4 0.00042 1.4E-08 56.8 7.9 59 38-96 18-82 (85)
55 1t1h_A Gspef-atpub14, armadill 97.4 0.00016 5.6E-09 58.9 5.3 55 98-157 6-60 (78)
56 2ecv_A Tripartite motif-contai 97.4 0.00037 1.3E-08 57.2 7.5 59 38-96 18-82 (85)
57 2djb_A Polycomb group ring fin 97.4 0.00026 9E-09 57.0 6.1 54 38-91 14-68 (72)
58 3lrq_A E3 ubiquitin-protein li 97.4 0.00013 4.3E-09 63.0 4.3 56 39-94 22-79 (100)
59 2ct2_A Tripartite motif protei 97.4 0.00012 4.2E-09 60.8 4.0 61 98-158 13-74 (88)
60 3htk_C E3 SUMO-protein ligase 97.3 0.00024 8.4E-09 71.7 6.8 91 60-157 143-237 (267)
61 2yu4_A E3 SUMO-protein ligase 97.3 0.0002 6.8E-09 61.2 5.2 57 98-157 5-68 (94)
62 3ng2_A RNF4, snurf, ring finge 97.3 0.00011 3.7E-09 58.7 3.2 60 97-158 7-69 (71)
63 3ztg_A E3 ubiquitin-protein li 97.3 0.00017 5.9E-09 60.7 4.6 46 38-83 12-60 (92)
64 3hcs_A TNF receptor-associated 97.3 8.7E-05 3E-09 69.8 3.0 67 38-104 17-86 (170)
65 2f42_A STIP1 homology and U-bo 97.3 0.00014 4.9E-09 69.7 4.5 55 98-157 104-158 (179)
66 3hct_A TNF receptor-associated 97.3 0.00012 3.9E-09 65.0 3.3 66 39-104 18-86 (118)
67 3ng2_A RNF4, snurf, ring finge 97.3 0.0002 6.8E-09 57.1 4.3 56 38-93 9-71 (71)
68 2ecw_A Tripartite motif-contai 97.3 0.0004 1.4E-08 56.9 6.2 61 98-162 17-81 (85)
69 2djb_A Polycomb group ring fin 97.2 0.00022 7.6E-09 57.4 4.1 55 98-157 13-67 (72)
70 2xeu_A Ring finger protein 4; 97.2 0.00017 5.7E-09 56.2 3.1 54 40-93 4-64 (64)
71 2ysl_A Tripartite motif-contai 97.2 0.00049 1.7E-08 55.1 5.9 56 96-155 16-72 (73)
72 2ecy_A TNF receptor-associated 97.2 0.00034 1.2E-08 55.3 4.8 55 96-155 11-65 (66)
73 1jm7_A BRCA1, breast cancer ty 97.2 0.0003 1E-08 61.1 4.9 55 39-93 21-78 (112)
74 1z6u_A NP95-like ring finger p 97.2 0.0003 1E-08 65.4 5.0 53 39-91 78-132 (150)
75 2y43_A E3 ubiquitin-protein li 97.2 0.00023 7.7E-09 60.9 3.8 55 39-93 22-77 (99)
76 3fl2_A E3 ubiquitin-protein li 97.1 0.00038 1.3E-08 62.1 5.0 47 39-85 52-99 (124)
77 2csy_A Zinc finger protein 183 97.1 0.00057 2E-08 56.2 5.6 46 39-84 15-60 (81)
78 2c2l_A CHIP, carboxy terminus 97.1 0.00028 9.7E-09 70.6 3.8 55 98-157 206-260 (281)
79 2ecy_A TNF receptor-associated 97.0 0.00039 1.3E-08 54.9 3.8 51 38-88 14-65 (66)
80 2yur_A Retinoblastoma-binding 97.0 0.00087 3E-08 54.3 5.6 47 39-85 15-64 (74)
81 2egp_A Tripartite motif-contai 97.0 0.00014 4.8E-09 59.2 0.5 59 38-96 11-76 (79)
82 2yur_A Retinoblastoma-binding 97.0 0.00048 1.6E-08 55.9 3.6 56 98-156 13-68 (74)
83 2ect_A Ring finger protein 126 97.0 0.00037 1.2E-08 56.8 2.9 58 98-158 13-70 (78)
84 2ecv_A Tripartite motif-contai 96.9 0.00065 2.2E-08 55.6 4.1 57 98-158 17-77 (85)
85 3ztg_A E3 ubiquitin-protein li 96.9 0.00093 3.2E-08 56.1 5.0 50 98-151 11-61 (92)
86 2ysl_A Tripartite motif-contai 96.9 0.002 6.8E-08 51.5 6.7 51 38-88 19-72 (73)
87 2ckl_B Ubiquitin ligase protei 96.9 0.00078 2.7E-08 63.0 4.8 55 98-156 52-106 (165)
88 4ayc_A E3 ubiquitin-protein li 96.9 0.00062 2.1E-08 62.0 3.9 32 41-72 55-86 (138)
89 1rmd_A RAG1; V(D)J recombinati 96.8 0.0011 3.6E-08 58.4 5.1 80 39-132 23-106 (116)
90 2ct2_A Tripartite motif protei 96.8 0.0018 6.2E-08 53.5 6.1 54 38-91 14-74 (88)
91 2d8t_A Dactylidin, ring finger 96.8 0.00049 1.7E-08 55.2 2.4 53 37-89 13-65 (71)
92 2ecm_A Ring finger and CHY zin 96.8 0.00083 2.8E-08 50.7 3.2 52 98-151 3-54 (55)
93 2egp_A Tripartite motif-contai 96.7 0.00043 1.5E-08 56.3 1.7 56 98-157 10-70 (79)
94 1jm7_A BRCA1, breast cancer ty 96.7 0.00064 2.2E-08 59.0 2.8 57 99-159 20-77 (112)
95 2ckl_B Ubiquitin ligase protei 96.7 0.0011 3.8E-08 61.9 4.6 34 39-72 54-88 (165)
96 3hct_A TNF receptor-associated 96.7 0.0015 5E-08 57.8 4.9 60 93-157 11-70 (118)
97 2ckl_A Polycomb group ring fin 96.7 0.00093 3.2E-08 58.0 3.6 35 39-73 15-50 (108)
98 2ea6_A Ring finger protein 4; 96.7 0.00099 3.4E-08 52.5 3.3 53 98-152 13-68 (69)
99 2y43_A E3 ubiquitin-protein li 96.6 0.0015 5E-08 55.8 4.4 54 98-156 20-73 (99)
100 2csy_A Zinc finger protein 183 96.6 0.003 1E-07 51.8 5.6 48 98-151 13-60 (81)
101 2d8t_A Dactylidin, ring finger 96.5 0.00098 3.4E-08 53.4 2.5 53 98-156 13-65 (71)
102 3lrq_A E3 ubiquitin-protein li 96.5 0.0018 6.2E-08 55.6 4.3 55 99-157 21-75 (100)
103 4ap4_A E3 ubiquitin ligase RNF 96.5 0.0017 5.7E-08 57.6 4.1 60 98-159 5-67 (133)
104 2ect_A Ring finger protein 126 96.4 0.0033 1.1E-07 51.0 4.9 55 38-92 14-71 (78)
105 2ckl_A Polycomb group ring fin 96.4 0.004 1.4E-07 54.0 5.6 51 98-153 13-63 (108)
106 2ep4_A Ring finger protein 24; 96.4 0.0049 1.7E-07 49.4 5.6 52 98-152 13-64 (74)
107 3fl2_A E3 ubiquitin-protein li 96.3 0.0025 8.7E-08 56.6 4.2 50 98-152 50-99 (124)
108 2ea6_A Ring finger protein 4; 96.3 0.0025 8.5E-08 50.1 3.6 48 38-85 14-68 (69)
109 1jm7_B BARD1, BRCA1-associated 96.2 0.00097 3.3E-08 58.9 0.8 48 39-88 22-70 (117)
110 2ecn_A Ring finger protein 141 96.2 0.0017 5.9E-08 51.6 2.2 53 98-157 13-65 (70)
111 2ysj_A Tripartite motif-contai 96.2 0.0053 1.8E-07 47.7 4.9 35 38-72 19-53 (63)
112 1x4j_A Ring finger protein 38; 96.2 0.0062 2.1E-07 49.1 5.5 65 85-152 6-72 (75)
113 1g25_A CDK-activating kinase a 96.2 0.0034 1.2E-07 49.2 3.7 54 40-93 4-63 (65)
114 2kiz_A E3 ubiquitin-protein li 96.1 0.0069 2.4E-07 47.9 4.9 52 98-152 12-63 (69)
115 2ysj_A Tripartite motif-contai 96.0 0.0062 2.1E-07 47.3 4.5 47 96-146 16-63 (63)
116 1rmd_A RAG1; V(D)J recombinati 96.0 0.0023 8E-08 56.1 2.0 54 98-156 21-74 (116)
117 1z6u_A NP95-like ring finger p 96.0 0.0045 1.5E-07 57.4 4.0 52 98-154 76-127 (150)
118 1chc_A Equine herpes virus-1 r 95.9 0.012 4E-07 46.3 5.6 45 40-84 6-51 (68)
119 1iym_A EL5; ring-H2 finger, ub 95.9 0.004 1.4E-07 46.9 2.6 51 98-150 3-53 (55)
120 3hcs_A TNF receptor-associated 95.8 0.0073 2.5E-07 56.5 4.8 62 91-157 9-70 (170)
121 1jm7_B BARD1, BRCA1-associated 95.8 0.0016 5.4E-08 57.5 -0.0 52 98-156 20-71 (117)
122 2y1n_A E3 ubiquitin-protein li 95.8 0.0056 1.9E-07 65.2 4.1 53 39-91 332-385 (389)
123 2ecm_A Ring finger and CHY zin 95.7 0.016 5.6E-07 43.4 5.3 45 39-83 5-53 (55)
124 2l0b_A E3 ubiquitin-protein li 95.7 0.012 4.2E-07 49.4 5.1 52 98-152 38-89 (91)
125 4ayc_A E3 ubiquitin-protein li 95.6 0.0094 3.2E-07 54.0 4.7 48 99-152 52-99 (138)
126 2ecj_A Tripartite motif-contai 95.4 0.015 5.2E-07 44.0 4.4 34 38-71 14-47 (58)
127 1v87_A Deltex protein 2; ring- 95.4 0.013 4.5E-07 50.9 4.5 55 99-153 24-95 (114)
128 1chc_A Equine herpes virus-1 r 95.2 0.015 5.1E-07 45.7 3.9 49 98-151 3-51 (68)
129 1e4u_A Transcriptional repress 95.2 0.0072 2.5E-07 49.9 2.0 56 98-156 9-66 (78)
130 3knv_A TNF receptor-associated 95.2 0.0057 2E-07 56.1 1.5 34 39-72 31-64 (141)
131 3l11_A E3 ubiquitin-protein li 95.1 0.0068 2.3E-07 53.0 1.8 49 98-151 13-61 (115)
132 2y1n_A E3 ubiquitin-protein li 95.0 0.014 4.8E-07 62.2 4.1 55 100-159 332-386 (389)
133 2kiz_A E3 ubiquitin-protein li 94.9 0.035 1.2E-06 43.7 5.2 47 38-84 13-62 (69)
134 2ecj_A Tripartite motif-contai 94.8 0.021 7.2E-07 43.2 3.6 45 98-146 13-58 (58)
135 1x4j_A Ring finger protein 38; 94.8 0.023 7.9E-07 45.7 4.0 45 39-83 23-70 (75)
136 2ep4_A Ring finger protein 24; 94.7 0.029 1E-06 44.8 4.4 46 38-83 14-62 (74)
137 1wim_A KIAA0161 protein; ring 94.7 0.0042 1.4E-07 52.6 -0.7 57 98-155 3-69 (94)
138 1v87_A Deltex protein 2; ring- 94.6 0.022 7.4E-07 49.5 3.7 35 38-72 24-76 (114)
139 2l0b_A E3 ubiquitin-protein li 94.6 0.021 7.1E-07 48.0 3.4 45 39-83 40-87 (91)
140 1iym_A EL5; ring-H2 finger, ub 94.6 0.029 1E-06 42.0 3.8 44 40-83 6-53 (55)
141 3l11_A E3 ubiquitin-protein li 94.4 0.01 3.6E-07 51.8 1.2 48 39-112 15-62 (115)
142 3knv_A TNF receptor-associated 94.4 0.014 4.7E-07 53.5 2.0 53 95-152 26-78 (141)
143 2yho_A E3 ubiquitin-protein li 94.4 0.029 1E-06 46.2 3.7 59 99-169 17-76 (79)
144 2vje_B MDM4 protein; proto-onc 94.3 0.047 1.6E-06 42.8 4.7 55 98-158 5-60 (63)
145 2ecg_A Baculoviral IAP repeat- 94.1 0.016 5.5E-07 46.9 1.6 46 98-153 23-69 (75)
146 2ecl_A Ring-box protein 2; RNF 94.1 0.029 9.8E-07 46.2 3.1 49 38-86 14-77 (81)
147 2ecn_A Ring finger protein 141 93.8 0.011 3.6E-07 46.9 -0.1 47 38-85 14-60 (70)
148 2vje_A E3 ubiquitin-protein li 93.7 0.077 2.6E-06 41.7 4.8 54 99-158 7-61 (64)
149 2ecl_A Ring-box protein 2; RNF 93.6 0.032 1.1E-06 45.9 2.5 52 101-154 16-78 (81)
150 3dpl_R Ring-box protein 1; ubi 93.0 0.071 2.4E-06 46.5 3.8 46 39-84 37-100 (106)
151 3kop_A Uncharacterized protein 92.6 0.56 1.9E-05 44.6 9.5 32 349-380 22-55 (188)
152 4ic3_A E3 ubiquitin-protein li 92.5 0.043 1.5E-06 44.3 1.6 45 98-152 22-67 (74)
153 3vk6_A E3 ubiquitin-protein li 92.1 0.12 4.2E-06 44.6 4.1 53 102-158 3-55 (101)
154 1bor_A Transcription factor PM 91.9 0.029 9.9E-07 42.8 -0.0 46 98-152 4-49 (56)
155 3i2d_A E3 SUMO-protein ligase 91.9 0.12 4.2E-06 54.4 4.7 54 101-157 250-305 (371)
156 2ea5_A Cell growth regulator w 91.6 0.11 3.7E-06 41.5 3.1 52 98-161 13-65 (68)
157 4fo9_A E3 SUMO-protein ligase 91.2 0.16 5.5E-06 53.4 4.7 55 100-157 215-271 (360)
158 4ic3_A E3 ubiquitin-protein li 91.1 0.072 2.5E-06 43.0 1.5 30 40-69 25-55 (74)
159 2nnz_A Hypothetical protein; b 90.7 0.44 1.5E-05 44.3 6.6 100 351-479 32-142 (153)
160 1bor_A Transcription factor PM 88.9 0.15 5.1E-06 38.8 1.6 31 38-68 5-35 (56)
161 1e4u_A Transcriptional repress 88.4 0.43 1.5E-05 39.1 4.2 50 39-88 11-65 (78)
162 4a0k_B E3 ubiquitin-protein li 88.4 0.088 3E-06 46.8 0.0 45 40-84 49-111 (117)
163 3dpl_R Ring-box protein 1; ubi 88.1 0.3 1E-05 42.5 3.3 68 82-151 19-100 (106)
164 2vje_A E3 ubiquitin-protein li 87.1 0.54 1.8E-05 36.8 3.9 45 39-83 8-55 (64)
165 3t6p_A Baculoviral IAP repeat- 86.5 0.2 6.8E-06 52.5 1.4 44 99-152 294-338 (345)
166 2d8s_A Cellular modulator of i 86.2 1.7 5.8E-05 35.7 6.6 48 38-85 14-70 (80)
167 3t6p_A Baculoviral IAP repeat- 86.2 0.2 6.7E-06 52.6 1.1 31 39-69 295-326 (345)
168 2kkx_A Uncharacterized protein 85.2 0.73 2.5E-05 39.7 3.9 54 38-91 26-85 (102)
169 2ecg_A Baculoviral IAP repeat- 84.5 1 3.5E-05 36.1 4.4 29 39-67 25-54 (75)
170 2vje_B MDM4 protein; proto-onc 84.3 0.78 2.7E-05 35.7 3.5 45 39-83 7-54 (63)
171 2d8s_A Cellular modulator of i 83.2 0.94 3.2E-05 37.3 3.7 55 98-154 13-72 (80)
172 3i2d_A E3 SUMO-protein ligase 78.9 1.5 5.2E-05 46.2 4.4 49 40-113 250-301 (371)
173 1wim_A KIAA0161 protein; ring 77.3 1.5 5E-05 36.6 3.1 34 39-72 5-41 (94)
174 2yho_A E3 ubiquitin-protein li 73.5 0.95 3.3E-05 36.9 0.9 30 40-69 19-49 (79)
175 3m62_A Ubiquitin conjugation f 72.5 2.9 9.9E-05 49.2 4.9 53 99-157 890-943 (968)
176 2ct0_A Non-SMC element 1 homol 72.5 3.5 0.00012 33.5 4.0 50 99-151 14-63 (74)
177 4fo9_A E3 SUMO-protein ligase 71.4 3.1 0.00011 43.7 4.4 47 41-112 217-266 (360)
178 4a0k_B E3 ubiquitin-protein li 68.9 0.65 2.2E-05 41.2 -1.2 53 98-152 46-112 (117)
179 1vd4_A Transcription initiatio 61.5 2.4 8.1E-05 32.0 0.9 42 98-154 12-53 (62)
180 2ea5_A Cell growth regulator w 54.0 16 0.00054 28.6 4.5 31 37-67 13-44 (68)
181 6rxn_A Rubredoxin; electron tr 53.0 3.6 0.00012 30.5 0.5 13 137-149 27-39 (46)
182 3nw0_A Non-structural maintena 52.4 9.6 0.00033 37.6 3.7 58 100-161 180-237 (238)
183 2xjy_A Rhombotin-2; oncoprotei 51.1 18 0.00062 31.4 5.0 91 39-134 29-126 (131)
184 2ct0_A Non-SMC element 1 homol 50.2 23 0.00079 28.6 5.0 47 38-84 14-63 (74)
185 1zx8_A Hypothetical protein TM 48.2 71 0.0024 28.8 8.4 99 351-479 15-123 (136)
186 2jtn_A LIM domain-binding prot 47.6 53 0.0018 30.3 7.9 88 40-134 88-180 (182)
187 2rgt_A Fusion of LIM/homeobox 44.3 59 0.002 29.6 7.6 91 39-135 33-127 (169)
188 2lv2_A Insulinoma-associated p 42.9 9 0.00031 31.4 1.5 46 98-155 26-71 (85)
189 1yuz_A Nigerythrin; rubrythrin 42.6 7.2 0.00025 37.6 1.0 9 141-149 187-195 (202)
190 1b8t_A Protein (CRP1); LIM dom 41.5 78 0.0027 29.4 8.1 33 39-71 34-67 (192)
191 2ctu_A Zinc finger protein 483 39.9 6.2 0.00021 29.6 0.1 40 98-156 16-55 (73)
192 4gzn_C ZFP-57, zinc finger pro 37.8 20 0.00069 27.2 2.7 43 99-153 3-45 (60)
193 2eps_A POZ-, at HOOK-, and zin 37.6 20 0.00068 25.7 2.6 44 98-152 10-53 (54)
194 2lce_A B-cell lymphoma 6 prote 35.0 21 0.00072 27.1 2.5 44 98-153 15-58 (74)
195 3mjh_B Early endosome antigen 34.9 12 0.00042 25.9 0.9 14 100-113 5-18 (34)
196 2drp_A Protein (tramtrack DNA- 34.7 22 0.00077 26.1 2.5 45 98-153 8-53 (66)
197 3uk3_C Zinc finger protein 217 33.7 26 0.00088 24.8 2.6 43 99-153 3-45 (57)
198 1vyx_A ORF K3, K3RING; zinc-bi 33.6 29 0.00099 26.6 3.0 50 98-151 4-58 (60)
199 1s24_A Rubredoxin 2; electron 33.6 8.2 0.00028 32.4 -0.2 20 138-159 66-85 (87)
200 2ctd_A Zinc finger protein 512 33.2 28 0.00096 28.6 3.1 43 98-153 32-75 (96)
201 2v3b_B Rubredoxin 2, rubredoxi 32.4 7.6 0.00026 29.8 -0.5 18 138-157 34-51 (55)
202 2kn9_A Rubredoxin; metalloprot 32.1 7 0.00024 32.4 -0.8 19 138-158 58-76 (81)
203 3k1l_B Fancl; UBC, ring, RWD, 31.5 16 0.00056 38.2 1.6 33 41-73 310-350 (381)
204 1x6e_A Zinc finger protein 24; 30.9 28 0.00097 26.2 2.6 44 98-153 12-55 (72)
205 2jyp_A Aragonite protein AP7; 30.7 21 0.00071 24.1 1.4 17 31-48 2-18 (36)
206 2d9h_A Zinc finger protein 692 30.7 21 0.00072 27.3 1.8 48 98-154 5-52 (78)
207 1bbo_A Human enhancer-binding 30.5 24 0.00082 25.0 2.0 42 100-153 1-42 (57)
208 1f2i_G Fusion of N-terminal 17 29.8 38 0.0013 25.4 3.2 46 97-154 16-63 (73)
209 1dx8_A Rubredoxin; electron tr 29.6 9.2 0.00031 30.8 -0.5 20 138-159 38-57 (70)
210 1e8j_A Rubredoxin; iron-sulfur 28.7 7.7 0.00026 29.4 -1.1 12 138-149 34-45 (52)
211 1m3v_A FLIN4, fusion of the LI 28.4 38 0.0013 29.2 3.3 57 100-160 32-89 (122)
212 1rut_X Flinc4, fusion protein 27.3 15 0.0005 34.5 0.4 90 40-134 33-129 (188)
213 1x5w_A Zinc finger protein 64, 24.8 37 0.0013 25.3 2.3 44 98-153 7-50 (70)
214 2adr_A ADR1; transcription reg 24.1 39 0.0013 24.2 2.2 42 100-153 2-43 (60)
215 3pwf_A Rubrerythrin; non heme 23.9 29 0.00099 32.4 1.7 8 142-149 155-162 (170)
216 2gqj_A Zinc finger protein KIA 22.8 25 0.00084 28.6 0.9 46 97-153 21-67 (98)
217 2cs3_A Protein C14ORF4, MY039 21.8 98 0.0034 25.6 4.2 37 38-74 14-54 (93)
218 3vk6_A E3 ubiquitin-protein li 21.8 1.1E+02 0.0037 26.3 4.7 60 40-105 2-63 (101)
219 2ct1_A Transcriptional repress 21.4 53 0.0018 24.9 2.6 46 98-154 13-59 (77)
220 2cot_A Zinc finger protein 435 21.4 49 0.0017 25.1 2.4 46 97-154 15-60 (77)
221 4rxn_A Rubredoxin; electron tr 21.2 41 0.0014 25.6 1.7 19 138-158 34-52 (54)
222 2k5c_A Uncharacterized protein 21.0 13 0.00043 30.9 -1.2 38 75-112 10-63 (95)
223 2m0e_A Zinc finger and BTB dom 20.6 47 0.0016 19.2 1.7 14 140-153 2-15 (29)
224 1dum_A Magainin 2; antibiotic, 20.2 25 0.00085 22.2 0.3 9 552-560 1-9 (26)
No 1
>1zkc_A Peptidyl-prolyl CIS-trans isomerase like 2; CIS-trans isomerization, peptidylprolyl isomerase, protein- folding, structural genomics consortium; 1.65A {Homo sapiens} SCOP: b.62.1.1
Probab=100.00 E-value=3.5e-51 Score=399.79 Aligned_cols=175 Identities=62% Similarity=1.133 Sum_probs=167.8
Q ss_pred cCCCcceEEEEEEeCeeEEEEeCCCCChhhHHHHHHHHhccccCCceEEEeecCcEEEecCCCCCCCCCCccCCCCCCCc
Q 007574 343 KNPKKKGYVQLHTTHGDLNIELHCDITPRSCENFITLCERGYYNGVAFHRSIRNFMIQGGDPTGTGRGGESIWGKPFKDE 422 (597)
Q Consensus 343 ~~~k~~~~V~l~T~~G~I~IEL~~d~aP~tv~NFl~L~~~g~Y~gt~fhRvi~~f~IQgGdptg~g~gg~si~g~~f~dE 422 (597)
+.+++..+|+|+|+.|+|+||||++.||+||+||+.||+.|||+|+.||||+++||||||||+++|.|++++||.+|+||
T Consensus 14 ~~~~~~~~v~l~T~~G~I~ieL~~~~aP~tv~NF~~L~~~g~Ydg~~FhRVi~~f~iQgGd~~~~g~Gg~si~g~~f~dE 93 (197)
T 1zkc_A 14 LVPRGSGYVRLHTNKGDLNLELHCDLTPKTCENFIRLCKKHYYDGTIFHRSIRNFVIQGGDPTGTGTGGESYWGKPFKDE 93 (197)
T ss_dssp CCCCSCEEEEEEETTEEEEEEECTTTSHHHHHHHHHHHHTTTTTTEEEEEEETTTEEEECCTTSSSSCCCBTTBSCBCCC
T ss_pred CCCCCCcEEEEEeCCccEEEEEcCCCCcHHHHHHHHHHhcCCCCCCEEEEEeCCCEEEcCCCCCCCCCCCccCCCccccc
Confidence 46788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccCCCccEEEEecCCCCCCCcceEEeccCCCCCCCCCcEEEEEEcChHHHHHHhcCCCCCC-CCCccccEEeEEEE
Q 007574 423 VNSKLLHSGRGVVSMANSGPHTNGSQFFILYKSATHLNYKHTVFGGVVGGLTTLAAMEKVPVDEN-DRPLEEIKITGVTV 501 (597)
Q Consensus 423 ~~~~l~h~~rG~lsman~g~ntngSqFFItl~~~p~LD~k~tVFGrVv~G~dvL~~Ie~~~td~~-~rP~~~I~I~~~~V 501 (597)
+++.++|+.+|+|||||.||++|+|||||++.+++|||++|+|||+|++|||||++|++++++.. ++|..+|+|.+|+|
T Consensus 94 ~~~~l~h~~~G~lsMAn~gp~sngSQFFIt~~~~~~LDg~~tVFG~Vv~Gmdvv~~I~~~~t~~~~~~P~~~i~I~~~~v 173 (197)
T 1zkc_A 94 FRPNLSHTGRGILSMANSGPNSNRSQFFITFRSCAYLDKKHTIFGRVVGGFDVLTAMENVESDPKTDRPKEEIRIDATTV 173 (197)
T ss_dssp CCTTCCSCSTTEEEECCSSTTCBCSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHHSCBCTTTCCBSSCCEEEEEEE
T ss_pred cCcCcCCCCceEEEEecCCCCCcccEEEEEcCCCCccCCCccEEEEEEcCHHHHHHHHcCCCCCCCCCcCCCeEEEEEEE
Confidence 88999999999999999999999999999999999999999999999999999999999999986 99999999999999
Q ss_pred EeCCCCCCChhhHHHH
Q 007574 502 FVNPYSEPDEEEEEEK 517 (597)
Q Consensus 502 l~dPf~~~~~~~~~~~ 517 (597)
+.|||+++.....+++
T Consensus 174 ~~dPf~d~~~~~~~~~ 189 (197)
T 1zkc_A 174 FVDPYEEADAQIAQER 189 (197)
T ss_dssp EECTTHHHHHHHHHHH
T ss_pred EcCCcccHHHHHHHHH
Confidence 9999998877766533
No 2
>3bo7_A Peptidyl-prolyl CIS-trans isomerase cyclophilin-T; isomerase-immunosuppressant complex, immunosuppressant, cyclophilin, structural G structural genomics consortium, SGC; HET: BMT; 2.35A {Toxoplasma gondii}
Probab=100.00 E-value=3.4e-51 Score=402.03 Aligned_cols=176 Identities=50% Similarity=0.901 Sum_probs=151.0
Q ss_pred CCCcceEEEEEEeCeeEEEEeCCCCChhhHHHHHHHHhccccCCceEEEeecCcEEEec-----CCCCCCCCCCccC---
Q 007574 344 NPKKKGYVQLHTTHGDLNIELHCDITPRSCENFITLCERGYYNGVAFHRSIRNFMIQGG-----DPTGTGRGGESIW--- 415 (597)
Q Consensus 344 ~~k~~~~V~l~T~~G~I~IEL~~d~aP~tv~NFl~L~~~g~Y~gt~fhRvi~~f~IQgG-----dptg~g~gg~si~--- 415 (597)
+++++++|.|+|+.|+|+||||++.||+||+||+.||+.|||+|+.||||+++|||||| ||+++|.||+++|
T Consensus 2 ~~~~~~~v~l~T~~G~i~ieL~~~~aP~t~~NF~~L~~~g~Ydg~~FhRvi~~f~iQgG~~~~~Dp~~~g~gg~si~~~~ 81 (201)
T 3bo7_A 2 KLKKKGYLRIVTTQGSLNIELHADMAPRACDSFLRLCAVKYFDDTIFHRCIRNFMIQGGRAELRQPSKKKEVQQSPRSIS 81 (201)
T ss_dssp ---CCEEEEEEETTEEEEEEECTTTCHHHHHHHHHHHHTTTTTTCBEEEEETTTEEEECCGGGCCC-------CCSSCCC
T ss_pred CCCCceEEEEEeCCCCEEEEEcCCCCcHHHHHHHHHHhcCccCCCEEEEeeCCCEEEcCcccccCCCCCCCCCccccccc
Confidence 46789999999999999999999999999999999999999999999999999999999 9999999999999
Q ss_pred ----CCCCCCcccccccCCCccEEEEecCCCCCCCcceEEeccCCCCCCCCCcEEEEEEcChHHHHHHhcCCCCCCCCCc
Q 007574 416 ----GKPFKDEVNSKLLHSGRGVVSMANSGPHTNGSQFFILYKSATHLNYKHTVFGGVVGGLTTLAAMEKVPVDENDRPL 491 (597)
Q Consensus 416 ----g~~f~dE~~~~l~h~~rG~lsman~g~ntngSqFFItl~~~p~LD~k~tVFGrVv~G~dvL~~Ie~~~td~~~rP~ 491 (597)
|..|+||+++.++|+.+|+|||||.|||+|+|||||++.+++|||++|+|||+|++|||||++|++++++.+++|.
T Consensus 82 ~~~~g~~f~dE~~~~l~h~~~G~lsmA~~gp~s~gSQFFIt~~~~~~LDg~~tVFG~Vv~Gmdvv~~I~~~~t~~~~~P~ 161 (201)
T 3bo7_A 82 GFPGGAPFEDEFDNRLVHQGIGVLSMANDGKHSNLSEFFITFKSCEHLNNKHTIFGRVVGGLDVLRQWEKLETDKKDKPL 161 (201)
T ss_dssp SSTTCCCBCCCCCTTCCCCSTTEEEECCSSTTCBSSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHTTCCBCTTSCBS
T ss_pred cccCCCcccCcccCCCCcCCCcEEEEeeCCCCCcccEEEEECCCCcccCCCceEEEEEecCHHHHHHHHhCCcCCCCCcC
Confidence 8999999889999999999999999999999999999999999999999999999999999999999999889999
Q ss_pred cccEEeEEEEEeCCCCCCChhhHHHHHh
Q 007574 492 EEIKITGVTVFVNPYSEPDEEEEEEKAK 519 (597)
Q Consensus 492 ~~I~I~~~~Vl~dPf~~~~~~~~~~~~~ 519 (597)
.+|+|.+|+|+.|||+++....+++.+.
T Consensus 162 ~~i~I~~~~v~~dPf~d~~~~~~~~~~~ 189 (201)
T 3bo7_A 162 KPPKVEEIIVFKNPFEDARKEMEDEKRE 189 (201)
T ss_dssp SCCBEEEEEEEECCC-------------
T ss_pred CCeEEEEEEEEcCCccCHHHHHHHHHHH
Confidence 9999999999999999998876655544
No 3
>2ok3_A Peptidyl-prolyl CIS-trans isomerase-like 3; beta-barrel, helix, disulfide bridge; 2.00A {Homo sapiens} SCOP: b.62.1.1 PDB: 1xyh_A 2oju_A*
Probab=100.00 E-value=1.5e-49 Score=377.79 Aligned_cols=159 Identities=57% Similarity=1.057 Sum_probs=154.5
Q ss_pred EEEEEEeCeeEEEEeCCCCChhhHHHHHHHHhccccCCceEEEeecCcEEEecCCCCCCCCCCccCCCCCCCcccccccC
Q 007574 350 YVQLHTTHGDLNIELHCDITPRSCENFITLCERGYYNGVAFHRSIRNFMIQGGDPTGTGRGGESIWGKPFKDEVNSKLLH 429 (597)
Q Consensus 350 ~V~l~T~~G~I~IEL~~d~aP~tv~NFl~L~~~g~Y~gt~fhRvi~~f~IQgGdptg~g~gg~si~g~~f~dE~~~~l~h 429 (597)
.|.|+|+.|+|+||||++.||+||+||+.||+.|||+|+.||||+++|||||||++++|.||+++||..|+||+.+.++|
T Consensus 2 ~v~~~T~~G~i~ieL~~~~aP~t~~NF~~L~~~g~Y~g~~fhRvi~~f~iQgGd~~~~g~gg~si~g~~~~dE~~~~l~h 81 (161)
T 2ok3_A 2 SVTLHTDVGDIKIEVFCERTPKTCENFLALCASNYYNGCIFHRNIKGFMVQTGDPTGTGRGGNSIWGKKFEDEYSEYLKH 81 (161)
T ss_dssp EEEEEETTEEEEEEECTTTCHHHHHHHHHHHHTTTTTTCBCCEEETTTEEEECCTTSSSSCCCCTTSSCBCCCCCTTCCS
T ss_pred EEEEEeCCccEEEEEcCCCCcHHHHHHHHHhhhcccCCCEEEEEECCCEEecCCCCCCCCCCCcccCCccccccCcCcCc
Confidence 58899999999999999999999999999999999999999999999999999999999999999999999998778999
Q ss_pred CCccEEEEecCCCCCCCcceEEeccCCCCCCCCCcEEEEEEcChHHHHHHhcCCCCCC-CCCccccEEeEEEEEeCCCCC
Q 007574 430 SGRGVVSMANSGPHTNGSQFFILYKSATHLNYKHTVFGGVVGGLTTLAAMEKVPVDEN-DRPLEEIKITGVTVFVNPYSE 508 (597)
Q Consensus 430 ~~rG~lsman~g~ntngSqFFItl~~~p~LD~k~tVFGrVv~G~dvL~~Ie~~~td~~-~rP~~~I~I~~~~Vl~dPf~~ 508 (597)
+.+|+|||||.||++|+|||||++.+++|||++|+|||+|++|||||++|++++++.. ++|.++|+|.+|.|+.|||+|
T Consensus 82 ~~~G~lsma~~gp~s~~SQFfI~~~~~~~Ldg~~tvFG~Vv~G~dvv~~I~~~~~~~~~~~P~~~v~I~~~~i~~~Pf~d 161 (161)
T 2ok3_A 82 NVRGVVSMANNGPNTNGSQFFITYGKQPHLDMKYTVFGKVIDGLETLDELEKLPVNEKTYRPLNDVHIKDITIHANPFAQ 161 (161)
T ss_dssp CSTTEEEECCSSTTCBCSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHTCCBCTTTCCBSSCCBEEEEEEECCSCC-
T ss_pred CCCeEEEEecCCCCCcceEEEEEcCCCCccCCCEeEEEEEeCCHHHHHHHHhCCccCCCCCcCCCeEEEEEEEecCCCCC
Confidence 9999999999999999999999999999999999999999999999999999999986 999999999999999999985
No 4
>2poe_A Cyclophilin-like protein, putative; cryptosporidium parvum cyclophilin isomerase, structural genomics; 2.01A {Cryptosporidium parvum iowa II} PDB: 2qer_A
Probab=100.00 E-value=2e-49 Score=384.49 Aligned_cols=166 Identities=44% Similarity=0.846 Sum_probs=155.4
Q ss_pred CcceEEEEEEeCeeEEEEeCCCCChhhHHHHHHHHhccccCCceEEEeecCcEEEecCCCCCCCCCCccCCCCCCCcccc
Q 007574 346 KKKGYVQLHTTHGDLNIELHCDITPRSCENFITLCERGYYNGVAFHRSIRNFMIQGGDPTGTGRGGESIWGKPFKDEVNS 425 (597)
Q Consensus 346 k~~~~V~l~T~~G~I~IEL~~d~aP~tv~NFl~L~~~g~Y~gt~fhRvi~~f~IQgGdptg~g~gg~si~g~~f~dE~~~ 425 (597)
.....|.|+|+.|+|+||||++.||+||+||+.||+.|||+|+.||||+++|||||||++++|.||+++||.+|+||+.+
T Consensus 14 ~~~~~v~i~t~~G~i~ieL~~~~aP~t~~NF~~L~~~g~Y~g~~FhRvi~~f~iQgGd~~~~g~gg~si~g~~~~dE~~~ 93 (185)
T 2poe_A 14 LYFQGVRIITNYGDLKFELFCSQCPKACKNFLALSASGYYKNTIFHKNIKGFIIQGGDPTGTGKGGESIYGRYFDDEIYP 93 (185)
T ss_dssp -CCCEEEEEETTEEEEEEECTTTCHHHHHHHHHHHHTTTTTTEEEEEECTTSEEEEEETTSSSSCCCBTTBSCBCCCCCT
T ss_pred CCceEEEEEecCccEEEEEeCCCCcHHHHHHHHHhccCCCCCCEEEEEECCCEEEcCCCCCCCCCCCccCCCcccccccC
Confidence 45678999999999999999999999999999999999999999999999999999999999999999999999999878
Q ss_pred cccCCCccEEEEecCC----CCCCCcceEEeccCCCCCCCCCcEEEEEEcChHHHHHHhcCCCCCCCCCccccEEeEEEE
Q 007574 426 KLLHSGRGVVSMANSG----PHTNGSQFFILYKSATHLNYKHTVFGGVVGGLTTLAAMEKVPVDENDRPLEEIKITGVTV 501 (597)
Q Consensus 426 ~l~h~~rG~lsman~g----~ntngSqFFItl~~~p~LD~k~tVFGrVv~G~dvL~~Ie~~~td~~~rP~~~I~I~~~~V 501 (597)
.++|+++|+|||||.| |++|+|||||++.+++|||++|+|||+|++||+||++|++++++.+++|.++|+|.+|+|
T Consensus 94 ~l~h~~~G~lsmA~~g~~~~p~s~gSQFFIt~~~~~~LDg~~tVFG~Vv~Gmdvv~~I~~~~t~~~~~P~~~v~I~~~~i 173 (185)
T 2poe_A 94 ELKYDRRGILSMASKGASKKPNTNGSQFFITYSSLPQLNGEYVIFGKLIDGFETLNTLENCPSDKSHKPIDEIIIKDIVI 173 (185)
T ss_dssp TSCCCSTTEEEECCSCC-CCCSCBCSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHHSCBCTTSCBSSCCEEEEEEE
T ss_pred CCccCCCeEEEEecCCCCCCCCCccceEEEECCCCCccCCCeeEEEEEeCCHHHHHHHHhCCcCCCCCcCCCeEEEEEEE
Confidence 9999999999999999 999999999999999999999999999999999999999999998899999999999999
Q ss_pred EeCCCCCCCh
Q 007574 502 FVNPYSEPDE 511 (597)
Q Consensus 502 l~dPf~~~~~ 511 (597)
+.|||++++.
T Consensus 174 ~~dPf~d~~~ 183 (185)
T 2poe_A 174 HSNPIADQEI 183 (185)
T ss_dssp ECCC------
T ss_pred ECCCCCCccc
Confidence 9999998753
No 5
>2b71_A Cyclophilin-like protein; structural genomics, structural genomics consortium, SGC, isomerase; 2.50A {Plasmodium yoelii} SCOP: b.62.1.1
Probab=100.00 E-value=5.5e-48 Score=377.13 Aligned_cols=159 Identities=45% Similarity=0.854 Sum_probs=151.7
Q ss_pred cceEEEEEEeCeeEEEEeCCCCChhhHHHHHHHHhccccCCceEEEeecCcEEEecCCCCCCCCCCccCCCCCCCccccc
Q 007574 347 KKGYVQLHTTHGDLNIELHCDITPRSCENFITLCERGYYNGVAFHRSIRNFMIQGGDPTGTGRGGESIWGKPFKDEVNSK 426 (597)
Q Consensus 347 ~~~~V~l~T~~G~I~IEL~~d~aP~tv~NFl~L~~~g~Y~gt~fhRvi~~f~IQgGdptg~g~gg~si~g~~f~dE~~~~ 426 (597)
....|.|+|+.|+|+||||++.||+||+||+.||+.|||+|+.||||+++|||||||++++|.||+++||.+|+||+++.
T Consensus 37 ~~~~V~l~T~~G~I~ieL~~~~aP~tv~NF~~L~~~g~Y~g~~FhRVi~~f~iQgGd~~~~g~gg~si~g~~~~dE~~~~ 116 (196)
T 2b71_A 37 ERGYITIYTNLGDFEVELYWYHSPKTCLNFYTLCEMGFYDNTIFHRVIPNFVIQGGDPTGTGKGGKSIYGEYFEDEINKE 116 (196)
T ss_dssp HSCEEEEEETTEEEEEEECTTTSHHHHHHHHHHHHTTTTTTEEEEEEETTTEEEEEETTSSSSCCCBTTBSCBCCCCCTT
T ss_pred CCcEEEEEeCCCCEEEEEeCCCCcHHHHHHHHHhhcCCcCCCEEEEEeCCcEEEcCCCCCCCCCCCccCCCcccccccCC
Confidence 45789999999999999999999999999999999999999999999999999999999999999999999999998889
Q ss_pred ccCCCccEEEEecCCCCCCCcceEEeccCCCCCCCCCcEEEEEEcChHHHHHHhcCCCCCCCCCccccEEeEEEEEeCC
Q 007574 427 LLHSGRGVVSMANSGPHTNGSQFFILYKSATHLNYKHTVFGGVVGGLTTLAAMEKVPVDENDRPLEEIKITGVTVFVNP 505 (597)
Q Consensus 427 l~h~~rG~lsman~g~ntngSqFFItl~~~p~LD~k~tVFGrVv~G~dvL~~Ie~~~td~~~rP~~~I~I~~~~Vl~dP 505 (597)
++|+++|+|||||.|||+|+|||||++.+++|||++|+|||+|++||+||++|++++++.+++|..+|+|.+|.|+.||
T Consensus 117 l~h~~~G~lsMAn~gpns~gSQFFIt~~~~~~LDg~~tVFG~Vv~Gmdvv~~I~~~~t~~~~~P~~~i~I~~~~i~~dP 195 (196)
T 2b71_A 117 LKHTGAGILSMSNNGPNTNSSQFFITLAPLPHLDGKHTIFARVSKNMTCIENIASVQTTATNKPIFDLKILRTSTAVNA 195 (196)
T ss_dssp CCCCSTTEEEECCSSTTCBSSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHTSCBCTTCCBSSCCEEEEEEC----
T ss_pred cCcCCCeEEEEccCCCCCcccEEEEECCCCCccCCCEeEEEEEecCHHHHHHHHhCCcCCCCCCCCCeEEEEEEEecCC
Confidence 9999999999999999999999999999999999999999999999999999999999988999999999999999998
No 6
>2x7k_A Peptidyl-prolyl CIS-trans isomerase-like 1; isomerase-immunosuppressant complex, immunosuppressant; HET: MLE MVA BMT ABA SAR; 1.15A {Homo sapiens} PDB: 1xwn_A
Probab=100.00 E-value=1.8e-47 Score=365.15 Aligned_cols=156 Identities=46% Similarity=0.835 Sum_probs=151.7
Q ss_pred cceEEEEEEeCeeEEEEeCCCCChhhHHHHHHHHhccccCCceEEEeecCcEEEecCCCCCCCCCCccCCCCCCCccccc
Q 007574 347 KKGYVQLHTTHGDLNIELHCDITPRSCENFITLCERGYYNGVAFHRSIRNFMIQGGDPTGTGRGGESIWGKPFKDEVNSK 426 (597)
Q Consensus 347 ~~~~V~l~T~~G~I~IEL~~d~aP~tv~NFl~L~~~g~Y~gt~fhRvi~~f~IQgGdptg~g~gg~si~g~~f~dE~~~~ 426 (597)
...+|.|+|+.|+|+||||++.||+||+||+.||+.|||+|+.||||+++|||||||++++|.|++++||..|+||+.+.
T Consensus 10 ~~~~v~l~t~~G~i~ieL~~~~aP~t~~NF~~L~~~g~Y~g~~fhRvi~~f~iQgGd~~~~g~gg~si~g~~~~dE~~~~ 89 (166)
T 2x7k_A 10 QPPNVYLETSMGIIVLELYWKHAPKTCKNFAELARRGYYNGTKFHRIIKDFMIQGGDPTGTGRGGASIYGKQFEDELHPD 89 (166)
T ss_dssp CCSEEEEEETTEEEEEEECTTTCHHHHHHHHHHHHHTTTTTEECCEEETTTEEEECCTTSSSSCCCCTTSSCBCCCCCTT
T ss_pred CCCEEEEEeCCCcEEEEEccCCCCHHHHHHHHHHhcCCCCCCEEEEEECCCEEEcCCCCCCCCCCCccCCCccccccccc
Confidence 35689999999999999999999999999999999999999999999999999999999999999999999999998789
Q ss_pred ccCCCccEEEEecCCCCCCCcceEEeccCCCCCCCCCcEEEEEEcChHHHHHHhcCCCCCCCCCccccEEeEEEEE
Q 007574 427 LLHSGRGVVSMANSGPHTNGSQFFILYKSATHLNYKHTVFGGVVGGLTTLAAMEKVPVDENDRPLEEIKITGVTVF 502 (597)
Q Consensus 427 l~h~~rG~lsman~g~ntngSqFFItl~~~p~LD~k~tVFGrVv~G~dvL~~Ie~~~td~~~rP~~~I~I~~~~Vl 502 (597)
++|+++|+|||||.|||+|+|||||++.+++|||++|+|||+|++|||||++|++++++.+++|..+|+|.+|.|+
T Consensus 90 l~h~~~G~lsmAn~gp~s~gSQFfI~~~~~~~Ldg~~tvFG~Vv~G~dvv~~I~~~~t~~~~~P~~~i~I~~~~i~ 165 (166)
T 2x7k_A 90 LKFTGAGILAMANAGPDTNGSQFFVTLAPTQWLDGKHTIFGRVCQGIGMVNRVGMVETNSQDRPVDDVKIIKAYPS 165 (166)
T ss_dssp SCCCSTTEEEECBSSTTCBCSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHTTSCBCTTSCBSSCCEEEEEEEC
T ss_pred cCCCCCeEEEEeeCCCCCccceEEEECCCCCccCCCeeEEEEEEcCHHHHHHHHcCCcCCCCCcCCCeEEEEEEEe
Confidence 9999999999999999999999999999999999999999999999999999999999988999999999999986
No 7
>2fu0_A Cyclophilin, putative; PFE0505W, cyclosporin-binding domain, structura genomics, structural genomics consortium, SGC, unknown FUNC; 1.80A {Plasmodium falciparum} SCOP: b.62.1.1
Probab=100.00 E-value=1.9e-47 Score=362.89 Aligned_cols=155 Identities=46% Similarity=0.766 Sum_probs=150.6
Q ss_pred ceEEEEEEeCeeEEEEeCCCCChhhHHHHHHHHhccccCCceEEEeecCcEEEecCCCCCCCCCCccCCCCCCCcccccc
Q 007574 348 KGYVQLHTTHGDLNIELHCDITPRSCENFITLCERGYYNGVAFHRSIRNFMIQGGDPTGTGRGGESIWGKPFKDEVNSKL 427 (597)
Q Consensus 348 ~~~V~l~T~~G~I~IEL~~d~aP~tv~NFl~L~~~g~Y~gt~fhRvi~~f~IQgGdptg~g~gg~si~g~~f~dE~~~~l 427 (597)
...|.|+|+.|+|+||||++.||+||+||+.||+.|||+|+.||||+++||||||||+++|.|+++|||..|+||+...+
T Consensus 5 ~~~v~~~T~~G~i~ieL~~~~aP~t~~NF~~L~~~g~Y~g~~fhRvi~~f~iQgGd~~~~g~gg~si~g~~~~dE~~~~l 84 (160)
T 2fu0_A 5 PKSAIIYTTMGDIHISLFYKECKKTVQNFSVHSINGYYNNCIFHRVIKHFMVQTGDPSGDGTGGESIWGNEFEDEFFDHL 84 (160)
T ss_dssp CCEEEEEETTEEEEEEECTTTCHHHHHHHHHHHHTTTTTTCBCCEEETTTEEEECCTTSSSSCCCCTTSSCBCCCCBTTB
T ss_pred CCEEEEEecCccEEEEEeCCCChHHHHHHHHHhccCccCCCEEEEEECCCEEEeCCcCCCCCCCCcccCCCccccccCCc
Confidence 45799999999999999999999999999999999999999999999999999999999999999999999999987789
Q ss_pred cCCCccEEEEecCCCCCCCcceEEeccCCCCCCCCCcEEEEEEcChHHHHHHhcCCCCCCCCCccccEEeEEEEE
Q 007574 428 LHSGRGVVSMANSGPHTNGSQFFILYKSATHLNYKHTVFGGVVGGLTTLAAMEKVPVDENDRPLEEIKITGVTVF 502 (597)
Q Consensus 428 ~h~~rG~lsman~g~ntngSqFFItl~~~p~LD~k~tVFGrVv~G~dvL~~Ie~~~td~~~rP~~~I~I~~~~Vl 502 (597)
+|+++|+|||||.+|++|+|||||++.++||||++|+|||+|++|||||++|++++++.+++|.++|+|.+|.|+
T Consensus 85 ~h~~~G~lsmA~~gp~s~~SQFfI~~~~~~~Ldg~~tvFG~Vv~G~dvv~~I~~~~t~~~~~P~~~v~I~~~~v~ 159 (160)
T 2fu0_A 85 NHSKPFMVSMANCGPNTNGSQFFITTVPCPWLDFKHTVFGKVTQGSKIVLDIEKVRTDKRDKPLEDIKILNIKIN 159 (160)
T ss_dssp CSSSSSEEEECCSSTTCBCSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHTSCBCTTSCBSSCCBEEEEEEC
T ss_pred ccCCceEEEEecCCCCCcccEEEEECCCCCccCCCcEEEEEEEcCHHHHHHHHhCCcCCCCCcCCCeEEEEEEEe
Confidence 999999999999999999999999999999999999999999999999999999999988999999999999985
No 8
>3bkp_A Cyclophilin; malaria, isomerase, structural GENO structural genomics consortium, SGC; 1.80A {Toxoplasma gondii}
Probab=100.00 E-value=1.2e-47 Score=383.74 Aligned_cols=168 Identities=43% Similarity=0.746 Sum_probs=158.1
Q ss_pred CCCcceEEEEEEeCeeEEEEeCCCCChhhHHHHHHHHhccccCCceEEEeecCcEEEecCCCCCCCCCCccC--CCCCCC
Q 007574 344 NPKKKGYVQLHTTHGDLNIELHCDITPRSCENFITLCERGYYNGVAFHRSIRNFMIQGGDPTGTGRGGESIW--GKPFKD 421 (597)
Q Consensus 344 ~~k~~~~V~l~T~~G~I~IEL~~d~aP~tv~NFl~L~~~g~Y~gt~fhRvi~~f~IQgGdptg~g~gg~si~--g~~f~d 421 (597)
.|+....|.|+|+.|+|+||||++.||+||+||+.||+.|||+|+.||||+++|||||||++++|.||++|| |..|+|
T Consensus 17 ~p~~~~~V~l~T~~G~I~ieL~~d~aP~tv~NF~~L~~~g~Ydgt~FhRVi~~FmiQgGdp~~~G~Gg~si~~~g~~f~d 96 (232)
T 3bkp_A 17 QGSTRGKVVLHTSLGDLDVELWARECPLACRNFVQLCLEGYYVNTIFHRVVKDFIVQGGDPTGTGRGGADTTFDGKPFDV 96 (232)
T ss_dssp CCSCBCEEEEEETTEEEEEEEBTTTCHHHHHHHHHHHHHTTTTTCBEEEEETTTEEEECCTTSSSSCCCCCTTTTCCBCC
T ss_pred cCCCCCEEEEEECCCcEEEEEcCCCCcHHHHHHHHHhhcCccCCCEEEEEeCCCEEEcCCCCCCCCCCCccccCCCccCC
Confidence 345678999999999999999999999999999999999999999999999999999999999999999999 999999
Q ss_pred cccccccCCCccEEEEecCCC--------------CCCCcceEEeccCCCCCCCCCcEEEEEEcChHH--HHHHhcCCCC
Q 007574 422 EVNSKLLHSGRGVVSMANSGP--------------HTNGSQFFILYKSATHLNYKHTVFGGVVGGLTT--LAAMEKVPVD 485 (597)
Q Consensus 422 E~~~~l~h~~rG~lsman~g~--------------ntngSqFFItl~~~p~LD~k~tVFGrVv~G~dv--L~~Ie~~~td 485 (597)
|+.+.++|+.+|+|||||.++ ++|+||||||+.+++|||++|+|||+|+ ||+| |++|+.++++
T Consensus 97 E~~~~l~h~~~G~lsMA~~g~~~~~~~n~e~g~~~~sngSQFFIt~~~~p~LDg~~tVFG~Vv-g~~v~~v~kI~~~~t~ 175 (232)
T 3bkp_A 97 ETHPRLKFRYRGLVGVANLGRSSKDAENDERGRSLGTNGNQFFITLARADVLNNAYTLFGKVT-GHTLYNLMKFNDLEVG 175 (232)
T ss_dssp CCCTTCCCCSTTEEEECCCC----------------CBCSCEEEESSCCGGGTTTSCEEEEEC-GGGHHHHHHHTTSCBC
T ss_pred ccccCcCcCCCeEEEEeccCCcccccccccccccCCCcCCEEEEECCCCcccCCCccEEEEEE-eCchHHHHHHHcCCcC
Confidence 987889999999999999997 6999999999999999999999999999 7765 8899999999
Q ss_pred CCCCCccccEEeEEEEEeCCCCCCChh
Q 007574 486 ENDRPLEEIKITGVTVFVNPYSEPDEE 512 (597)
Q Consensus 486 ~~~rP~~~I~I~~~~Vl~dPf~~~~~~ 512 (597)
.+++|..+|+|.+|+|+.|||+++...
T Consensus 176 ~~~~P~~~i~I~~~~vl~dPf~d~~~~ 202 (232)
T 3bkp_A 176 KEDRPMTPPFIKSVDVLWNPFEDLVPR 202 (232)
T ss_dssp GGGCBSSCCBEEEEEEEECCCTTCCCS
T ss_pred CCCCcCCCeEEEEEEEEcCChhhhhhc
Confidence 899999999999999999999998754
No 9
>2hq6_A Serologically defined colon cancer antigen 10; protein folding, peptidyl-prolyl CIS-trans isomerase, struct genomics; 1.75A {Homo sapiens}
Probab=100.00 E-value=3.2e-47 Score=368.97 Aligned_cols=163 Identities=49% Similarity=0.899 Sum_probs=155.3
Q ss_pred CCcceEEEEEEeCeeEEEEeCCCCChhhHHHHHHHHhccccCCceEEEeecCcEEEecCCCCCCCCCCccCCCCCCCccc
Q 007574 345 PKKKGYVQLHTTHGDLNIELHCDITPRSCENFITLCERGYYNGVAFHRSIRNFMIQGGDPTGTGRGGESIWGKPFKDEVN 424 (597)
Q Consensus 345 ~k~~~~V~l~T~~G~I~IEL~~d~aP~tv~NFl~L~~~g~Y~gt~fhRvi~~f~IQgGdptg~g~gg~si~g~~f~dE~~ 424 (597)
++....|.|+|+.|+|+||||++.||+||+||+.||+.|||+|+.||||+++|||||||++++|.||+++||.+|+||+.
T Consensus 21 ~~~~~~V~l~T~~G~I~ieL~~~~aP~tv~NF~~L~~~g~Y~g~~FhRvi~~f~iQgGd~~~~g~gg~si~g~~~~dE~~ 100 (185)
T 2hq6_A 21 PPTNGKVLLKTTAGDIDIELWSKEAPKACRNFIQLCLEAYYDNTIFHRVVPGFIVQGGDPTGTGSGGESIYGAPFKDEFH 100 (185)
T ss_dssp CCCBCEEEEEETTEEEEEEEBTTTCHHHHHHHHHHHHTTTTTTEECCEEETTTEEEECCTTSSSSCCCCTTSSCBCCCCB
T ss_pred CCCCCEEEEEeCCccEEEEEeCCCCcHHHHHHHHHhhcCccCCCEEEEEECCCEEEcCCCCCCCCCCCcccCCccccccc
Confidence 45677899999999999999999999999999999999999999999999999999999999999999999999999987
Q ss_pred ccccCCCccEEEEecCCCCCCCcceEEeccCCCCCCCCCcEEEEEEcChHHH--HHHhcCCCCCCCCCccccEEeEEEEE
Q 007574 425 SKLLHSGRGVVSMANSGPHTNGSQFFILYKSATHLNYKHTVFGGVVGGLTTL--AAMEKVPVDENDRPLEEIKITGVTVF 502 (597)
Q Consensus 425 ~~l~h~~rG~lsman~g~ntngSqFFItl~~~p~LD~k~tVFGrVv~G~dvL--~~Ie~~~td~~~rP~~~I~I~~~~Vl 502 (597)
..++|+.+|+|||||.|+++|+|||||++.+++|||++|+|||+|+ ||+++ ++|+.++++.+++|..+|+|.+|+|+
T Consensus 101 ~~l~h~~~G~lsMA~~g~~s~gSQFFIt~~~~~~LDg~~tVFG~V~-G~~v~~~~~i~~~~~~~~~~P~~~v~I~~~~v~ 179 (185)
T 2hq6_A 101 SRLRFNRRGLVAMANAGSHDNGSQFFFTLGRADELNNKHTIFGKVT-GDTVYNMLRLSEVDIDDDERPHNPHKIKSCEVL 179 (185)
T ss_dssp TTBCSCSSSEEEECCSSTTCBCSCEEEESSCCGGGTTTSCEEEEEC-GGGHHHHHHTTCSCBCTTSCBSSCCEEEEEEEE
T ss_pred cCcccCCCeEEEEccCCCCCccceEEEECCCCCccCCCceEEEEEE-eCeeehhhHHhhCCcCCCCCCCCCeEEEEEEEe
Confidence 7899999999999999999999999999999999999999999999 88774 68999999989999999999999999
Q ss_pred eCCCCC
Q 007574 503 VNPYSE 508 (597)
Q Consensus 503 ~dPf~~ 508 (597)
.|||+|
T Consensus 180 ~~Pf~d 185 (185)
T 2hq6_A 180 FNPFDD 185 (185)
T ss_dssp ECTTC-
T ss_pred CCCCCC
Confidence 999985
No 10
>2a2n_A Peptidylprolyl isomerase domain and WD repeat CON; CIS-trans isomerization, protein-folding, peptidylprolyl ISO structural genomics; 1.65A {Homo sapiens} SCOP: b.62.1.1
Probab=100.00 E-value=5.3e-47 Score=364.87 Aligned_cols=156 Identities=46% Similarity=0.783 Sum_probs=150.5
Q ss_pred CcceEEEEEEeCeeEEEEeCCCCChhhHHHHHHHHhccccCCceEEEeecCcEEEecCCCCCCCCCCccCCCCCCCcccc
Q 007574 346 KKKGYVQLHTTHGDLNIELHCDITPRSCENFITLCERGYYNGVAFHRSIRNFMIQGGDPTGTGRGGESIWGKPFKDEVNS 425 (597)
Q Consensus 346 k~~~~V~l~T~~G~I~IEL~~d~aP~tv~NFl~L~~~g~Y~gt~fhRvi~~f~IQgGdptg~g~gg~si~g~~f~dE~~~ 425 (597)
.....|.|+|+.|+|+||||++.||+||+||+.||+.|||+|+.||||+++|||||||++++|.|++++||..|+||+..
T Consensus 19 ~~~~~v~~~t~~G~i~ieL~~~~aP~t~~NF~~L~~~g~Y~g~~FhRvi~~f~iQgGd~~~~g~gg~si~g~~~~dE~~~ 98 (176)
T 2a2n_A 19 RVSDSAIIHTSMGDIHTKLFPVECPKTVENFCVHSRNGYYNGHTFHRIIKGFMIQTGDPTGTGMGGESIWGGEFEDEFHS 98 (176)
T ss_dssp CCCSEEEEEETTEEEEEEECTTTCHHHHHHHHHHHHTTTTTTCBCCEEETTTEEEECCTTSSSSCCCCTTSSCBCCCCCT
T ss_pred CCCCEEEEEecCccEEEEEeCCCChHHHHHHHHHhhcCccCCCEEEEEECCcEEEccCCCCCCCCCCcccCCcccccccc
Confidence 44668999999999999999999999999999999999999999999999999999999999999999999999999877
Q ss_pred cccCCCccEEEEecCCCCCCCcceEEeccCCCCCCCCCcEEEEEEcChHHHHHHhcCCCC-CCCCCccccEEeEEEE
Q 007574 426 KLLHSGRGVVSMANSGPHTNGSQFFILYKSATHLNYKHTVFGGVVGGLTTLAAMEKVPVD-ENDRPLEEIKITGVTV 501 (597)
Q Consensus 426 ~l~h~~rG~lsman~g~ntngSqFFItl~~~p~LD~k~tVFGrVv~G~dvL~~Ie~~~td-~~~rP~~~I~I~~~~V 501 (597)
.++|+++|+|||||.|||+|+|||||++.+++|||++|+|||+|++|||||++|++++++ .+++|.++|+|.+|.|
T Consensus 99 ~l~h~~~G~lsmA~~gp~s~gSQFFIt~~~~~~LDg~~tVFG~Vv~Gmdvv~~I~~~~t~~~~~~P~~~v~I~~v~v 175 (176)
T 2a2n_A 99 TLRHDRPYTLSMANAGSNTNGSQFFITVVPTPWLDNKHTVFGRVTKGMEVVQRISNVKVNPKTDKPYEDVSIINITV 175 (176)
T ss_dssp TCCSCSSSEEEECCSSTTCBCSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHTSCBCTTTCCBSSCCBEEEEEE
T ss_pred ccccCCceEEEEEeCCCCCcccEEEEECCCCCccCCCeeEEEEEeCCHHHHHHHHcCCccCCCCccCCCeEEEEEEE
Confidence 899999999999999999999999999999999999999999999999999999999998 5899999999999986
No 11
>2k7n_A Peptidyl-prolyl CIS-trans isomerase-like 1; beta barrel, disorder-order transition, HOOK-like, mRNA processing, mRNA splicing, rotamase; NMR {Homo sapiens}
Probab=100.00 E-value=1.2e-46 Score=369.10 Aligned_cols=162 Identities=45% Similarity=0.790 Sum_probs=155.6
Q ss_pred cceEEEEEEeCeeEEEEeCCCCChhhHHHHHHHHhccccCCceEEEeecCcEEEecCCCCCCCCCCccCCCCCCCccccc
Q 007574 347 KKGYVQLHTTHGDLNIELHCDITPRSCENFITLCERGYYNGVAFHRSIRNFMIQGGDPTGTGRGGESIWGKPFKDEVNSK 426 (597)
Q Consensus 347 ~~~~V~l~T~~G~I~IEL~~d~aP~tv~NFl~L~~~g~Y~gt~fhRvi~~f~IQgGdptg~g~gg~si~g~~f~dE~~~~ 426 (597)
....|.|+|+.|+|+||||++.||+||+||+.||+.+||+|+.||||+++|||||||++++|.|+++|||..|+||+.+.
T Consensus 10 ~~~~V~l~T~~G~I~ieL~~d~aP~tv~NF~~L~~~g~Ydg~~FhRVi~~F~iQgGd~~~~g~gg~si~g~~f~dE~~~~ 89 (203)
T 2k7n_A 10 QPPNVYLETSMGIIVLELYWKHAPKTCKNFAELARRGYYNGTKFHRIIKDFMIQGGDPTGTGRGGASIYGKQFEDELHPD 89 (203)
T ss_dssp CCSEEEEEESSCEEEEEECTTTCTTHHHHHHHHHHHTCGGGCEEEEEETTTEEEEECSSSSSSCCCTTSCSCBCCCCCCS
T ss_pred CCCEEEEEeCCCcEEEEEccCCCcHHHHHHHHHHhcCccCCCEEEEEeCCcEEEcCCCCCCCCCCCccCCCccccccccc
Confidence 35689999999999999999999999999999999999999999999999999999999999999999999999998789
Q ss_pred ccCCCccEEEEecCCCCCCCcceEEeccCCCCCCCCCcEEEEEEcChHHHHHHhcCCCCCCCCCccccEEeEEEEEeCCC
Q 007574 427 LLHSGRGVVSMANSGPHTNGSQFFILYKSATHLNYKHTVFGGVVGGLTTLAAMEKVPVDENDRPLEEIKITGVTVFVNPY 506 (597)
Q Consensus 427 l~h~~rG~lsman~g~ntngSqFFItl~~~p~LD~k~tVFGrVv~G~dvL~~Ie~~~td~~~rP~~~I~I~~~~Vl~dPf 506 (597)
++|+++|+|||||.+||+|+|||||++.+++|||++|+|||+|++|||||++|++++++..++|..+|+|.+|.|+..++
T Consensus 90 l~h~~~G~lsMAn~gpnsngSQFFIt~~~~~~LDg~~tVFG~VveGmdvv~kI~~~~t~~~~~P~~~V~I~~~~v~~~~~ 169 (203)
T 2k7n_A 90 LKFTGAGILAMANAGPDTNGSQFFVTLAPTQWLDGKHTIFGRVCQGIGMVNRVGMVETNSQDRPVDDVKIIKAYPSGGGG 169 (203)
T ss_dssp SCCCSSCEEEEEESSTTCEEEEEEEESSCCCSSTTTSCEEEEEESCHHHHHHHHSCCEEETTEECCCCBEEEEEECCCCC
T ss_pred ccCCCCeEEEEeeCCCCCcccEEEEEcCCCCccCCCeeEEEEEEcCHHHHHHHHcCCcCCCCCcCCCeEEEEEEEEecCC
Confidence 99999999999999999999999999999999999999999999999999999999999889999999999999997766
Q ss_pred CC
Q 007574 507 SE 508 (597)
Q Consensus 507 ~~ 508 (597)
..
T Consensus 170 s~ 171 (203)
T 2k7n_A 170 SG 171 (203)
T ss_dssp CC
T ss_pred CC
Confidence 43
No 12
>3ich_A Peptidyl-prolyl CIS-trans isomerase B; beta sandwich, cyclosporin, endoplasmic reticulum, glycoprot isomerase, rotamase; 1.20A {Homo sapiens} PDB: 3ici_A* 1cyn_A* 2esl_A* 2rmc_A* 1h0p_A 1xo7_A 1xq7_A*
Probab=100.00 E-value=2.1e-46 Score=364.16 Aligned_cols=162 Identities=41% Similarity=0.738 Sum_probs=152.9
Q ss_pred ceEEEEE---EeCeeEEEEeCCCCChhhHHHHHHHHh--ccc-cCCceEEEeecCcEEEecC-CCCCCCCCCccCCCCCC
Q 007574 348 KGYVQLH---TTHGDLNIELHCDITPRSCENFITLCE--RGY-YNGVAFHRSIRNFMIQGGD-PTGTGRGGESIWGKPFK 420 (597)
Q Consensus 348 ~~~V~l~---T~~G~I~IEL~~d~aP~tv~NFl~L~~--~g~-Y~gt~fhRvi~~f~IQgGd-ptg~g~gg~si~g~~f~ 420 (597)
..|+.|. |+.|+|+||||++.||+||+||+.||+ .|| |+|+.||||+++||||||| +.++|.||.||||..|+
T Consensus 17 ~v~~di~i~~t~~G~i~ieL~~~~aP~t~~NF~~L~~g~~g~~Y~g~~FhRvi~~f~iQgGd~~~~~g~gg~si~g~~f~ 96 (188)
T 3ich_A 17 KVYFDLRIGDEDVGRVIFGLFGKTVPKTVDNFVALATGEKGFGYKNSKFHRVIKDFMIQGGDFTRGDGTGGKSIYGERFP 96 (188)
T ss_dssp EEEEEEEETTEEEEEEEEEECTTTCHHHHHHHHHHHHTTTSCSSTTCBCCEEETTTEEEECCTTTSSSSCCCBTTBSCBC
T ss_pred eEEEEEEECCEeceeEEEEEcCCCCcHHHHHHHHHhcccCCccccCCEEEEEECCCEEEcCCccCCCCCCCccccCCccc
Confidence 4455554 899999999999999999999999995 789 9999999999999999999 56899999999999999
Q ss_pred CcccccccCCCccEEEEecCCCCCCCcceEEeccCCCCCCCCCcEEEEEEcChHHHHHHhcCCCCCCCCCccccEEeEEE
Q 007574 421 DEVNSKLLHSGRGVVSMANSGPHTNGSQFFILYKSATHLNYKHTVFGGVVGGLTTLAAMEKVPVDENDRPLEEIKITGVT 500 (597)
Q Consensus 421 dE~~~~l~h~~rG~lsman~g~ntngSqFFItl~~~p~LD~k~tVFGrVv~G~dvL~~Ie~~~td~~~rP~~~I~I~~~~ 500 (597)
|| +..++|+++|+|||||.|+|+|+||||||+.+++|||++|+|||+|++|||||++|++++++..++|..+|+|.+|+
T Consensus 97 dE-~~~l~h~~~G~lsmAn~gp~tngSQFfIt~~~~~~LDg~~tVFG~Vv~G~dvv~~I~~~~~~~~~~P~~~v~I~~~~ 175 (188)
T 3ich_A 97 DE-NFKLKHYGPGWVSMANAGKDTNGSQFFITTVKTAWLDGKHVVFGKVLEGMEVVRKVESTKTDSRDKPLKDVIIADCG 175 (188)
T ss_dssp CC-CCCSCCCSTTEEEECCSSTTCBCSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHTSCBCTTSCBSSCEEEEEEE
T ss_pred cc-ccCcccCCCeEEEEccCCCCCcccEEEEECCCCcccCCCeeEEEEEeCCHHHHHHHHhCCcCCCCeECCCEEEEEeE
Confidence 99 78899999999999999999999999999999999999999999999999999999999999888999999999999
Q ss_pred EE--eCCCCCCC
Q 007574 501 VF--VNPYSEPD 510 (597)
Q Consensus 501 Vl--~dPf~~~~ 510 (597)
++ .|||+++.
T Consensus 176 ~l~~~~Pf~~~~ 187 (188)
T 3ich_A 176 KIEVEKPFAIAK 187 (188)
T ss_dssp EEEEEEEEECCC
T ss_pred EEecCCCCCCCC
Confidence 98 89998875
No 13
>1w74_A Peptidyl-prolyl CIS-trans isomerase A; cyclophilin, ppiase, RV0009, rotamase, structural proteomics in europe, spine; 2.6A {Mycobacterium tuberculosis} SCOP: b.62.1.1
Probab=100.00 E-value=2.1e-45 Score=357.78 Aligned_cols=155 Identities=44% Similarity=0.768 Sum_probs=147.2
Q ss_pred CCcceEEEEEEeCeeEEEEeCCCCChhhHHHHHHHH---------------hccccCCceEEEeecCcEEEecCCCCCCC
Q 007574 345 PKKKGYVQLHTTHGDLNIELHCDITPRSCENFITLC---------------ERGYYNGVAFHRSIRNFMIQGGDPTGTGR 409 (597)
Q Consensus 345 ~k~~~~V~l~T~~G~I~IEL~~d~aP~tv~NFl~L~---------------~~g~Y~gt~fhRvi~~f~IQgGdptg~g~ 409 (597)
|....+|.|+|+.|+|+||||++.||+||+||+.|| +.+||+|+.||||+++|||||||++++|.
T Consensus 20 ~~~~~~v~l~t~~G~I~ieL~~~~aP~tv~NF~~L~tG~~~~~~~~~g~~~~~~~Y~g~~FhRVi~~fmiQgGd~~g~G~ 99 (191)
T 1w74_A 20 PLATATATLHTNRGDIKIALFGNHAPKTVANFVGLAQGTKDYSTQNASGGPSGPFYDGAVFHRVIQGFMIQGGDPTGTGR 99 (191)
T ss_dssp -CCSEEEEEEETTEEEEEEECTTTSHHHHHHHHHHHHTCSCCSSCCTTBSSSSCSSTTEEEEEEETTTEEEECCTTSSSS
T ss_pred CCCCeEEEEEecceeEEEEEcCCCChHHHHHHHHHhcCCcccccccccccccCCccCCCEEEEEeCCCEEecCCCCCCCC
Confidence 345678999999999999999999999999999999 45899999999999999999999998888
Q ss_pred CCCccCCCCCCCcccccccCCCccEEEEecCCCCCCCcceEEeccCCCCCCCCCcEEEEEEc--ChHHHHHHhcCCCCCC
Q 007574 410 GGESIWGKPFKDEVNSKLLHSGRGVVSMANSGPHTNGSQFFILYKSATHLNYKHTVFGGVVG--GLTTLAAMEKVPVDEN 487 (597)
Q Consensus 410 gg~si~g~~f~dE~~~~l~h~~rG~lsman~g~ntngSqFFItl~~~p~LD~k~tVFGrVv~--G~dvL~~Ie~~~td~~ 487 (597)
|+ ||..|+||+++.++|+++|+|||||.|||+|+||||||+.+++|||++|+|||+|++ ||+||++|++++++.+
T Consensus 100 gg---~g~~f~dE~~~~l~h~~~G~lsMAn~gpntngSQFFIt~~~~~~LDg~~tVFG~Vv~~~Gmdvv~~I~~~~t~~~ 176 (191)
T 1w74_A 100 GG---PGYKFADEFHPELQFDKPYLLAMANAGPGTNGSQFFITVGKTPHLNRRHTIFGEVIDAESQRVVEAISKTATDGN 176 (191)
T ss_dssp CC---SSCCBCCCCCTTCCSCSSSEEEECCSSTTCBSSCEEEESSCCGGGTTTSCEEEEECSHHHHHHHHHHHTSCBCTT
T ss_pred CC---CCCccccccccCCCcCCCcEEEEeeCCCCCccceEEEEcCCCcccCCCeeEEEEEEECCCHHHHHHHHcCCcCCC
Confidence 87 699999998889999999999999999999999999999999999999999999999 9999999999999988
Q ss_pred CCCccccEEeEEEEE
Q 007574 488 DRPLEEIKITGVTVF 502 (597)
Q Consensus 488 ~rP~~~I~I~~~~Vl 502 (597)
++|..+|+|.+|+|+
T Consensus 177 ~~P~~~v~I~~~~i~ 191 (191)
T 1w74_A 177 DRPTDPVVIESITIS 191 (191)
T ss_dssp SCBSSCCEEEEEEEC
T ss_pred CCcCCCeEEEEEEEC
Confidence 999999999999984
No 14
>2wfi_A Peptidyl-prolyl CIS-trans isomerase G; phosphoprotein, PRE-mRNA splicing, alternative splicing, nucleus, rotamase, cyclosporin; HET: OCS; 0.75A {Homo sapiens} PDB: 2wfj_A* 2gw2_A
Probab=100.00 E-value=5.5e-45 Score=351.89 Aligned_cols=155 Identities=39% Similarity=0.723 Sum_probs=146.3
Q ss_pred cceEEEEE---EeCeeEEEEeCCCCChhhHHHHHHHHh-----------ccccCCceEEEeecCcEEEecCCC-CCCCCC
Q 007574 347 KKGYVQLH---TTHGDLNIELHCDITPRSCENFITLCE-----------RGYYNGVAFHRSIRNFMIQGGDPT-GTGRGG 411 (597)
Q Consensus 347 ~~~~V~l~---T~~G~I~IEL~~d~aP~tv~NFl~L~~-----------~g~Y~gt~fhRvi~~f~IQgGdpt-g~g~gg 411 (597)
+..|..+. |+.|+|+||||++.||+||+||+.||+ .+||+|+.||||+++|||||||++ ++|.|+
T Consensus 10 ~~vf~di~i~~t~~G~i~ieL~~~~aP~t~~NF~~L~~g~~g~~~~~~~~~~Y~g~~FhRvi~~f~iQgGd~~~~~g~gg 89 (179)
T 2wfi_A 10 PRCFFDIAINNQPAGRVVFELFSDVCPKTCENFRCLCTGEKGTGKSTQKPLHYKSCLFHRVVKDFMVQGGDFSEGNGRGG 89 (179)
T ss_dssp CEEEEEEEETTEEEEEEEEEECTTTCHHHHHHHHHHHHCTTCBCTTTCSBSCCTTCBEEEEETTTEEEECCTTTSSSSCC
T ss_pred CeEEEEEEECCccceEEEEEEcCCCCChHHHHHHHHhcCCcCcccccccCCeECCCEEEEEECCCEEEcccccCCCCCCC
Confidence 45555554 899999999999999999999999996 579999999999999999999997 889999
Q ss_pred CccCCCCCCCcccccccCCCccEEEEecCCCCCCCcceEEeccCCCCCCCCCcEEEEEEcChHHHHHHhcCCCCCCCCCc
Q 007574 412 ESIWGKPFKDEVNSKLLHSGRGVVSMANSGPHTNGSQFFILYKSATHLNYKHTVFGGVVGGLTTLAAMEKVPVDENDRPL 491 (597)
Q Consensus 412 ~si~g~~f~dE~~~~l~h~~rG~lsman~g~ntngSqFFItl~~~p~LD~k~tVFGrVv~G~dvL~~Ie~~~td~~~rP~ 491 (597)
+||||..|+|| ++.++|+++|+|||||.|||+|+||||||+.++||||++|+|||+|++|||||++|++++++.+++|.
T Consensus 90 ~si~g~~f~dE-~~~~~h~~~G~lsMAn~gp~tngSQFfIt~~~~~~LDg~~tVFG~Vv~G~dvv~~I~~~~t~~~~~P~ 168 (179)
T 2wfi_A 90 ESIYGGFFEDE-SFAVKHNKEFLLSMANRGKDTNGSQFFITTKPTPHLDGHHVVFGQVISGQEVVREIENQKTDAASKPF 168 (179)
T ss_dssp CCTTSSCBCCC-CCCSCCCSTTEEEECCSSTTCBCSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHTCCBCTTSCBS
T ss_pred CcccCCccccc-ccCcCcCCCeEEEEEeCCCCCcceEEEEEcCCCcccCCCeeEEEEEeCCHHHHHHHHcCCCCCCCCCC
Confidence 99999999999 57899999999999999999999999999999999999999999999999999999999999889999
Q ss_pred cccEEeEEEEE
Q 007574 492 EEIKITGVTVF 502 (597)
Q Consensus 492 ~~I~I~~~~Vl 502 (597)
.+|+|.+|++|
T Consensus 169 ~~v~I~~~G~l 179 (179)
T 2wfi_A 169 AEVRILSCGEL 179 (179)
T ss_dssp SCEEEEEEEEC
T ss_pred CCeEEEeCeeC
Confidence 99999999975
No 15
>1a58_A Cyclophilin; isomerase, ppiase; 1.95A {Brugia malayi} SCOP: b.62.1.1 PDB: 1a33_A 1c5f_A*
Probab=100.00 E-value=5.5e-45 Score=351.37 Aligned_cols=155 Identities=47% Similarity=0.802 Sum_probs=145.9
Q ss_pred ceEEEEE---EeCeeEEEEeCCCCChhhHHHHHHHHhc--------c---ccCCceEEEeecCcEEEecCCC-CCCCCCC
Q 007574 348 KGYVQLH---TTHGDLNIELHCDITPRSCENFITLCER--------G---YYNGVAFHRSIRNFMIQGGDPT-GTGRGGE 412 (597)
Q Consensus 348 ~~~V~l~---T~~G~I~IEL~~d~aP~tv~NFl~L~~~--------g---~Y~gt~fhRvi~~f~IQgGdpt-g~g~gg~ 412 (597)
..|+.+. |+.|+|+||||++.||+||+||+.||++ | ||+|+.||||+++|||||||++ ++|.|++
T Consensus 8 ~v~~di~i~~~~~G~i~ieL~~~~aP~t~~NF~~L~~~~~g~~~~~g~~~~Y~g~~FhRvi~~f~iQgGd~~~~~g~gg~ 87 (177)
T 1a58_A 8 RVFLDVTIDGNLAGRIVMELYNDIAPRTCNNFLMLCTGMAGTGKISGKPLHYKGSTFHRVIKNFMIQGGDFTKGDGTGGE 87 (177)
T ss_dssp EEEEEEEETTEEEEEEEEEECTTTCHHHHHHHHHHHHCTTCBCTTTCSBCCCTTCBEEEEETTTEEEECCCSSSSSSCCC
T ss_pred EEEEEEEECCEeceeEEEEEcCCCCchHHHHHHHHhcCCcCcccccCCcceeCCCEEEEEECCCEEEeCCccCCCCCCCC
Confidence 4455554 7899999999999999999999999984 4 9999999999999999999997 8899999
Q ss_pred ccCCCCCCCcccccccCCCccEEEEecCCCCCCCcceEEeccCCCCCCCCCcEEEEEEcChHHHHHHhcCCCCCCCCCcc
Q 007574 413 SIWGKPFKDEVNSKLLHSGRGVVSMANSGPHTNGSQFFILYKSATHLNYKHTVFGGVVGGLTTLAAMEKVPVDENDRPLE 492 (597)
Q Consensus 413 si~g~~f~dE~~~~l~h~~rG~lsman~g~ntngSqFFItl~~~p~LD~k~tVFGrVv~G~dvL~~Ie~~~td~~~rP~~ 492 (597)
+|||..|+|| +..++|+.+|+|||||.|||+|+||||||+.++||||++|+|||+|++|||||++|++++++.+++|..
T Consensus 88 si~g~~f~dE-~~~~~h~~~G~lsmAn~gp~tngSQFfIt~~~~~~LDg~~~VFG~Vv~G~dvv~~I~~~~~~~~~~P~~ 166 (177)
T 1a58_A 88 SIYGGMFDDE-EFVMKHDEPFVVSMANKGPNTNGSQFFITTTPAPHLNNIHVVFGKVVSGQEVVTKIEYLKTNSKNRPLA 166 (177)
T ss_dssp CTTSSCBCCC-CCCSCCCSSSEEEECCSSTTCBCSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHTSCBCTTSCBSS
T ss_pred cccCCcccCc-ccCcccCCCeEEEEeeCCCCCceeEEEEECCCCCccCCCEEEEEEEEcCHHHHHHHHhCCCCCCCcCCC
Confidence 9999999999 578999999999999999999999999999999999999999999999999999999999998899999
Q ss_pred ccEEeEEEEEe
Q 007574 493 EIKITGVTVFV 503 (597)
Q Consensus 493 ~I~I~~~~Vl~ 503 (597)
+|+|.+|++|.
T Consensus 167 ~v~I~~~G~l~ 177 (177)
T 1a58_A 167 DVVILNCGELV 177 (177)
T ss_dssp CEEEEEEEEEC
T ss_pred CeEEEEeEEEC
Confidence 99999999974
No 16
>1mzw_A Cyclophilin H, U-snRNP-ASSOCIATED cyclophilin; cyclophilin, peptidyl-prolyl-CIS/trans isomerase, spliceosome, U4/U6-60K protein, WD protein; 2.00A {Homo sapiens} SCOP: b.62.1.1 PDB: 1qoi_A
Probab=100.00 E-value=5e-45 Score=351.62 Aligned_cols=147 Identities=45% Similarity=0.794 Sum_probs=142.6
Q ss_pred EeCeeEEEEeCCCCChhhHHHHHHHHhccc--------cCCceEEEeecCcEEEecCCC-CCCCCCCccCCCCCCCcccc
Q 007574 355 TTHGDLNIELHCDITPRSCENFITLCERGY--------YNGVAFHRSIRNFMIQGGDPT-GTGRGGESIWGKPFKDEVNS 425 (597)
Q Consensus 355 T~~G~I~IEL~~d~aP~tv~NFl~L~~~g~--------Y~gt~fhRvi~~f~IQgGdpt-g~g~gg~si~g~~f~dE~~~ 425 (597)
|+.|+|+||||++.||+||+||++||+.+| |+|+.||||+++|||||||++ ++|.|+++|||..|+|| +.
T Consensus 22 t~~G~i~ieL~~~~aP~t~~NF~~L~~~~~g~~g~~~~Y~g~~FhRvi~~f~iQgGd~~~~~G~gg~si~g~~f~dE-~~ 100 (177)
T 1mzw_A 22 QEVGRMKIELFADVVPKTAENFRQFCTGEFRKDGVPIGYKGSTFHRVIKDFMIQGGDFVNGDGTGVASIYRGPFADE-NF 100 (177)
T ss_dssp EEEEEEEEEECTTTCHHHHHHHHHHHHTCCEETTEECSSTTCBCCEEETTTEEEECCTTTSSSCCCCCTTSSCBCCC-CC
T ss_pred eeceeEEEEEcCCCCcHHHHHHHHHHhcccCCcCccceECCCEEEEEECCCEEEcCCcccCCCCCCCccCCCcccCc-cc
Confidence 689999999999999999999999999998 999999999999999999996 88999999999999999 57
Q ss_pred cccCCCccEEEEecCCCCCCCcceEEeccCCCCCCCCCcEEEEEEcChHHHHHHhcCCCCCCCCCccccEEeEEEEE
Q 007574 426 KLLHSGRGVVSMANSGPHTNGSQFFILYKSATHLNYKHTVFGGVVGGLTTLAAMEKVPVDENDRPLEEIKITGVTVF 502 (597)
Q Consensus 426 ~l~h~~rG~lsman~g~ntngSqFFItl~~~p~LD~k~tVFGrVv~G~dvL~~Ie~~~td~~~rP~~~I~I~~~~Vl 502 (597)
.++|+++|+|||||.|||+|+|||||++.+++|||++|+|||+|++|||||++|++++++.+++|.++|+|.+|++|
T Consensus 101 ~l~h~~~G~lsmAn~gp~tngSQFfIt~~~~~~LDg~~~VFG~Vv~G~dvv~~I~~~~t~~~~~P~~~v~I~~cG~l 177 (177)
T 1mzw_A 101 KLRHSAPGLLSMANSGPSTNGCQFFITCSKCDWLDGKHVVFGKIIDGLLVMRKIENVPTGPNNKPKLPVVISQCGEM 177 (177)
T ss_dssp CSCCCSTTEEEECCSSTTCBCSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHTSCBCGGGCBSSCEEEEEEEEC
T ss_pred ccccCCCCEEEEccCCCCCcceEEEEECCCCCccCCCeeEEEEEeCCHHHHHHHHhCCcCCCCCCCCCEEEEeceeC
Confidence 89999999999999999999999999999999999999999999999999999999999889999999999999985
No 17
>2he9_A NK-tumor recognition protein; cyclosporin, isomerase, membrane, repeat, rotamase, peptidylprolyl isomerase, structural genomics; 2.00A {Homo sapiens}
Probab=100.00 E-value=1.7e-44 Score=351.75 Aligned_cols=156 Identities=43% Similarity=0.774 Sum_probs=146.9
Q ss_pred cceEEEE---EEeCeeEEEEeCCCCChhhHHHHHHHHh-----------ccccCCceEEEeecCcEEEecCCC-CCCCCC
Q 007574 347 KKGYVQL---HTTHGDLNIELHCDITPRSCENFITLCE-----------RGYYNGVAFHRSIRNFMIQGGDPT-GTGRGG 411 (597)
Q Consensus 347 ~~~~V~l---~T~~G~I~IEL~~d~aP~tv~NFl~L~~-----------~g~Y~gt~fhRvi~~f~IQgGdpt-g~g~gg 411 (597)
+..|..+ .|+.|+|+||||++.||+||+||+.||+ .+||+|+.||||+++|||||||++ ++|.|+
T Consensus 20 ~~vf~di~i~~t~~G~I~ieL~~~~aP~t~~NF~~L~~g~~g~~~~~~k~~~Y~g~~FhRVi~~fmiQgGd~~~~~G~gg 99 (192)
T 2he9_A 20 PQCHFDIEINREPVGRIMFQLFSDICPKTCKNFLCLCSGEKGLGKTTGKKLCYKGSTFHRVVKNFMIQGGDFSEGNGKGG 99 (192)
T ss_dssp CEEEEEEEETTEEEEEEEEEECTTTCHHHHHHHHHHHHCTTCBCTTTCSBSCCTTCBEEEEETTTEEEECCTTTSSSSCC
T ss_pred CeEEEEEEECCEecceEEEEEcCCCCchHHHHHHHHhcCCCCcccccccCCeECCCEEEEEECCCEEEcCcccCCCCCCC
Confidence 3455555 3899999999999999999999999995 579999999999999999999997 889999
Q ss_pred CccCCCCCCCcccccccCCCccEEEEecCCCCCCCcceEEeccCCCCCCCCCcEEEEEEcChHHHHHHhcCCCCCCCCCc
Q 007574 412 ESIWGKPFKDEVNSKLLHSGRGVVSMANSGPHTNGSQFFILYKSATHLNYKHTVFGGVVGGLTTLAAMEKVPVDENDRPL 491 (597)
Q Consensus 412 ~si~g~~f~dE~~~~l~h~~rG~lsman~g~ntngSqFFItl~~~p~LD~k~tVFGrVv~G~dvL~~Ie~~~td~~~rP~ 491 (597)
++|||..|+|| ++.++|+++|+|||||.|||+|+||||||+.+++|||++|+|||+|++|||||++|++++++.+++|.
T Consensus 100 ~siyg~~f~dE-~~~l~h~~~G~lsMAn~gp~tngSQFFIt~~~~~~LDg~~tVFG~Vv~Gmdvv~~I~~~~t~~~~~P~ 178 (192)
T 2he9_A 100 ESIYGGYFKDE-NFILKHDRAFLLSMANRGKHTNGSQFFITTKPAPHLDGVHVVFGLVISGFEVIEQIENLKTDAASRPY 178 (192)
T ss_dssp CCTTSSCBCCC-CCCSCCCSTTEEEECCSSTTCBCSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHTSCBCTTSCBS
T ss_pred CcccCCcccCc-cccCCCCCCeEEEEEeCCCCCcceEEEEEcCCCcccCCCccEEEEEEeCHHHHHHHHcCCcCCCCCCc
Confidence 99999999999 57899999999999999999999999999999999999999999999999999999999999889999
Q ss_pred cccEEeEEEEEe
Q 007574 492 EEIKITGVTVFV 503 (597)
Q Consensus 492 ~~I~I~~~~Vl~ 503 (597)
.+|+|.+|+++.
T Consensus 179 ~~v~I~~~g~l~ 190 (192)
T 2he9_A 179 ADVRVIDCGVLA 190 (192)
T ss_dssp SCEEEEEEEECC
T ss_pred CCeEEEEeEEEc
Confidence 999999999985
No 18
>2cmt_A Peptidyl-prolyl CIS-trans isomerase E; rotamase activity, rotamase, RNA-binding, cyclosporin, cyclophilin, beta-barrel; 1.50A {Schistosoma mansoni} PDB: 2ck1_A
Probab=100.00 E-value=2.1e-44 Score=345.66 Aligned_cols=147 Identities=47% Similarity=0.784 Sum_probs=140.8
Q ss_pred EeCeeEEEEeCCCCChhhHHHHHHHHhc--cc-cCCceEEEeecCcEEEecCCC-CCCCCCCccCCCCCCCcccccccCC
Q 007574 355 TTHGDLNIELHCDITPRSCENFITLCER--GY-YNGVAFHRSIRNFMIQGGDPT-GTGRGGESIWGKPFKDEVNSKLLHS 430 (597)
Q Consensus 355 T~~G~I~IEL~~d~aP~tv~NFl~L~~~--g~-Y~gt~fhRvi~~f~IQgGdpt-g~g~gg~si~g~~f~dE~~~~l~h~ 430 (597)
|+.|+|+||||++.||+||+||+.||+. || |+|+.||||+++|||||||++ ++|.||+++||..|+|| +..++|+
T Consensus 22 t~~G~i~ieL~~~~aP~t~~NF~~L~~~~~g~~Y~g~~FhRvi~~f~iQgGd~~~~~G~gg~si~g~~f~dE-~~~l~h~ 100 (172)
T 2cmt_A 22 GDAGRIVMELRSDIVPRTAENFRALCTGERGFGYHNCCFHRVIPQFMCQGGDFVKGDGTGGKSIYGRKFDDE-NFQLRHE 100 (172)
T ss_dssp EEEEEEEEEECTTTCHHHHHHHHHHHHTTTSCSSTTCBEEEEETTTEEEECCTTTSSSSCCCBTTBSCBCCC-CCCSCCC
T ss_pred eecceEEEEEcCCCCCHHHHHHHHHhccCCCceECCCEEEEEECCCEEEcCCccCCCCCCCCccCCCccccc-ccCcccC
Confidence 8999999999999999999999999974 88 999999999999999999997 78999999999999999 5789999
Q ss_pred CccEEEEecCCCCCCCcceEEeccCCCCCCCCCcEEEEEEcChHHHHHHhcCCCCCCCCCccccEEeEEEEEe
Q 007574 431 GRGVVSMANSGPHTNGSQFFILYKSATHLNYKHTVFGGVVGGLTTLAAMEKVPVDENDRPLEEIKITGVTVFV 503 (597)
Q Consensus 431 ~rG~lsman~g~ntngSqFFItl~~~p~LD~k~tVFGrVv~G~dvL~~Ie~~~td~~~rP~~~I~I~~~~Vl~ 503 (597)
++|+|||||.|||+|+|||||++.+++|||++|+|||+|++|||||++|++++++ +++|.++|+|.+|++|.
T Consensus 101 ~~G~lsmA~~gp~t~gSQFfIt~~~~~~LDg~~tvFG~Vv~G~dvv~~I~~~~~~-~~~P~~~v~I~~~g~l~ 172 (172)
T 2cmt_A 101 GFGVLSMANSGPNTNGSQFFICTTKCDWLDGKHVVFGRVVDGQNVVKKMESVGSK-SGKVKEPVIISRCGELI 172 (172)
T ss_dssp STTEEEECCSSTTCBCSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHGGGGCCT-TCCCSSCEEEEEEEEEC
T ss_pred CceEEEEeeCCCCCcccEEEEECCCCCccCCCeeEEEEEEcCHHHHHHHHhCCCC-CCCCCCCEEEEEeEeEC
Confidence 9999999999999999999999999999999999999999999999999999985 68999999999999873
No 19
>2haq_A Cyclophilin; rotamase, proline, isomerase, CIS-trans, protozoa, KAla-AZAR.; 1.97A {Leishmania donovani} PDB: 3eov_A* 3bt8_A
Probab=100.00 E-value=1.4e-44 Score=346.57 Aligned_cols=154 Identities=43% Similarity=0.740 Sum_probs=145.0
Q ss_pred cceEEEEE---EeCeeEEEEeCCCCChhhHHHHHHHH--hccc-cCCceEEEeecCcEEEecC-CCCCCCCCCccCCCCC
Q 007574 347 KKGYVQLH---TTHGDLNIELHCDITPRSCENFITLC--ERGY-YNGVAFHRSIRNFMIQGGD-PTGTGRGGESIWGKPF 419 (597)
Q Consensus 347 ~~~~V~l~---T~~G~I~IEL~~d~aP~tv~NFl~L~--~~g~-Y~gt~fhRvi~~f~IQgGd-ptg~g~gg~si~g~~f 419 (597)
+..|..|. |+.|+|+||||++.||+||+||+.|| +.|| |+|+.||||+++||||||| +.++|.|++||||.+|
T Consensus 12 ~~v~~di~i~~t~~G~i~ieL~~~~aP~t~~NF~~L~~g~~g~~Y~g~~FhRvi~~f~iQgGd~~~~~g~gg~si~g~~f 91 (172)
T 2haq_A 12 AKVYFDVMIDSEPLGRITIGLFGKDAPLTTENFRQLCTGEHGFGYKDSIFHRVIQNFMIQGGDFTNFDGTGGKSIYGEKF 91 (172)
T ss_dssp EEEEEEEEETTEEEEEEEEEECTTTCHHHHHHHHHHHHTTTSCCSTTCBCCEEETTTEEEECCTTTSSSSCCCCSSSSCB
T ss_pred CeEEEEEEECCEecceEEEEEeCCCCcHHHHHHHHHhccCCCcccCCCEEEEEECCCEEecCCccCCCCCCCccccCCcc
Confidence 34444443 89999999999999999999999999 7899 9999999999999999999 5688999999999999
Q ss_pred CCcccccccCCCccEEEEecCCCCCCCcceEEeccCCCCCCCCCcEEEEEEcChHHHHHHhcCCCCCCCCCccccEEeEE
Q 007574 420 KDEVNSKLLHSGRGVVSMANSGPHTNGSQFFILYKSATHLNYKHTVFGGVVGGLTTLAAMEKVPVDENDRPLEEIKITGV 499 (597)
Q Consensus 420 ~dE~~~~l~h~~rG~lsman~g~ntngSqFFItl~~~p~LD~k~tVFGrVv~G~dvL~~Ie~~~td~~~rP~~~I~I~~~ 499 (597)
+|| ++.++|+ +|+|||||.||++|+|||||++.+++|||++|+|||+|++|||||++|++++++..++|.++|+|.+|
T Consensus 92 ~dE-~~~l~h~-~G~lsmAn~gp~tngSQFfIt~~~~~~LDg~~~vFG~Vv~G~dvv~~I~~~~t~~~~~P~~~v~I~~~ 169 (172)
T 2haq_A 92 ADE-NLNVKHF-VGALSMANAGPNTNGSQFFITTAPTPWLDGRHVVFGKVLDGMDVVLRIEKTKTNSHDRPVKPVKIVAS 169 (172)
T ss_dssp CCC-CCCSCCC-TTEEEECCSSTTCBCSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHTSCBCGGGCBSSCEEEEEE
T ss_pred cCc-CCCcccC-ceEEEEccCCCCCcccEEEEECCCCCccCCCEeEEEEEeCCHHHHHHHHhCCcCCCCcCCCCeEEEEe
Confidence 999 7889999 99999999999999999999999999999999999999999999999999999988899999999999
Q ss_pred EEE
Q 007574 500 TVF 502 (597)
Q Consensus 500 ~Vl 502 (597)
++|
T Consensus 170 g~l 172 (172)
T 2haq_A 170 GEL 172 (172)
T ss_dssp EEC
T ss_pred EEC
Confidence 985
No 20
>2r99_A Peptidyl-prolyl CIS-trans isomerase E; CIS-trans isomerization, structural genomics consortium, SGC, alternative splicing, mRNA processing; 1.61A {Homo sapiens} SCOP: b.62.1.1 PDB: 3uch_A 1zmf_A
Probab=100.00 E-value=3.3e-44 Score=344.73 Aligned_cols=154 Identities=43% Similarity=0.775 Sum_probs=144.0
Q ss_pred ceEEEEE---EeCeeEEEEeCCCCChhhHHHHHHHHh--ccc-cCCceEEEeecCcEEEecCCC-CCCCCCCccCCCCCC
Q 007574 348 KGYVQLH---TTHGDLNIELHCDITPRSCENFITLCE--RGY-YNGVAFHRSIRNFMIQGGDPT-GTGRGGESIWGKPFK 420 (597)
Q Consensus 348 ~~~V~l~---T~~G~I~IEL~~d~aP~tv~NFl~L~~--~g~-Y~gt~fhRvi~~f~IQgGdpt-g~g~gg~si~g~~f~ 420 (597)
..|+.+. |+.|+|+||||++.||+||+||+.||+ .|| |+|+.||||+++|||||||++ ++|.|++++||..|+
T Consensus 13 ~v~~di~i~~t~~G~i~ieL~~~~aP~t~~NF~~L~~g~~g~~Y~g~~FhRvi~~f~iQgGd~~~~~g~gg~si~g~~f~ 92 (173)
T 2r99_A 13 QVYMDIKIGNKPAGRIQMLLRSDVVPMTAENFRCLCTHEKGFGFKGSSFHRIIPQFMCQGGDFTNHNGTGGKSIYGKKFD 92 (173)
T ss_dssp EEEEEEEETTEEEEEEEEEECTTTCHHHHHHHHHHHHTTTSCCSTTCBEEEEETTTEEEECCTTTSSSSCCCBTTBSCBC
T ss_pred EEEEEEEECCccceeEEEEECCCCCcHHHHHHHHHhcccCCceecCCEEEEeeCCCEEEeCCcCCCCCCCCCccCCCccc
Confidence 4444544 899999999999999999999999994 688 999999999999999999998 789999999999999
Q ss_pred CcccccccCCCccEEEEecCCCCCCCcceEEeccCCCCCCCCCcEEEEEEcChHHHHHHhcCCCCCCCCCccccEEeEEE
Q 007574 421 DEVNSKLLHSGRGVVSMANSGPHTNGSQFFILYKSATHLNYKHTVFGGVVGGLTTLAAMEKVPVDENDRPLEEIKITGVT 500 (597)
Q Consensus 421 dE~~~~l~h~~rG~lsman~g~ntngSqFFItl~~~p~LD~k~tVFGrVv~G~dvL~~Ie~~~td~~~rP~~~I~I~~~~ 500 (597)
|| +..++|+++|+|||||.|||+|+|||||++.+++|||++|+|||+|++|||||++|++++++ +++|.++|+|.+|+
T Consensus 93 dE-~~~l~h~~~G~lsmA~~gp~t~gSQFfIt~~~~~~LDg~~tVFG~Vv~G~dvv~~I~~~~~~-~~~P~~~v~I~~cG 170 (173)
T 2r99_A 93 DE-NFILKHTGPGLLSMANSGPNTNGSQFFLTCDKTDWLDGKHVVFGEVTEGLDVLRQIEAQGSK-DGKPKQKVIIADCG 170 (173)
T ss_dssp CC-CCCSCCCSSSEEEECCSSTTCBCSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHTTCCT-TCCCSSCEEEEEEE
T ss_pred Cc-ccCcccCCCcEEEEccCCCCCcccEEEEECCCCCccCCCeeEEEEEEcCHHHHHHHHhCCCC-CCCCCCCeEEEEee
Confidence 99 67899999999999999999999999999999999999999999999999999999999885 68999999999999
Q ss_pred EEe
Q 007574 501 VFV 503 (597)
Q Consensus 501 Vl~ 503 (597)
+|.
T Consensus 171 ~l~ 173 (173)
T 2r99_A 171 EYV 173 (173)
T ss_dssp ECC
T ss_pred eEC
Confidence 873
No 21
>2igv_A Peptidyl-prolyl CIS-trans isomerase 3; rotamase; 1.67A {Caenorhabditis elegans} SCOP: b.62.1.1 PDB: 1e3b_A 1e8k_A 1dyw_A 2igw_A 2hqj_A
Probab=100.00 E-value=2.9e-44 Score=345.14 Aligned_cols=147 Identities=46% Similarity=0.769 Sum_probs=140.4
Q ss_pred EeCeeEEEEeCCCCChhhHHHHHHHHhc--c--------ccCCceEEEeecCcEEEecCCC-CCCCCCCccCCCCCCCcc
Q 007574 355 TTHGDLNIELHCDITPRSCENFITLCER--G--------YYNGVAFHRSIRNFMIQGGDPT-GTGRGGESIWGKPFKDEV 423 (597)
Q Consensus 355 T~~G~I~IEL~~d~aP~tv~NFl~L~~~--g--------~Y~gt~fhRvi~~f~IQgGdpt-g~g~gg~si~g~~f~dE~ 423 (597)
|+.|+|+||||++.||+||+||+.||+. | ||+|+.||||+++|||||||++ ++|+|+++|||.+|+||
T Consensus 15 ~~~G~i~ieL~~~~aP~t~~NF~~L~~~~~g~g~~~~~~~Y~g~~FhRvi~~f~iQgGd~~~~~G~gg~siyg~~f~dE- 93 (173)
T 2igv_A 15 KASGRIVMELYDDVVPKTAGNFRALCTGENGIGKSGKPLHFKGSKFHRIIPNFMIQGGDFTRGNGTGGESIYGEKFPDE- 93 (173)
T ss_dssp EEEEEEEEEECTTTCHHHHHHHHHHHHTTTCBCTTSSBSCCTTCBCCEEETTTEEEECCTTTSSSSCCCBTTBSCBCCC-
T ss_pred EecceEEEEEeCCCCcHHHHHHHHHhcCCCCCCccCccceECCCEEEEEECCCEEEcCCCCCCCCCCCCccCCCcccCc-
Confidence 5699999999999999999999999986 5 7999999999999999999997 78999999999999999
Q ss_pred cccccCCCccEEEEecCCCCCCCcceEEeccCCCCCCCCCcEEEEEEcChHHHHHHhcCCCCCCCCCccccEEeEEEEEe
Q 007574 424 NSKLLHSGRGVVSMANSGPHTNGSQFFILYKSATHLNYKHTVFGGVVGGLTTLAAMEKVPVDENDRPLEEIKITGVTVFV 503 (597)
Q Consensus 424 ~~~l~h~~rG~lsman~g~ntngSqFFItl~~~p~LD~k~tVFGrVv~G~dvL~~Ie~~~td~~~rP~~~I~I~~~~Vl~ 503 (597)
++.++|+++|+|||||.|||+|+|||||++.+++|||++|+|||+|++|||||++|++++++ +++|.++|+|.+|+++.
T Consensus 94 ~~~l~h~~~G~lsmAn~gp~tngSQFfIt~~~~~~LDg~~~vFG~Vv~G~dvv~~I~~~~t~-~~~P~~~v~I~~~g~l~ 172 (173)
T 2igv_A 94 NFKEKHTGPGVLSMANAGPNTNGSQFFLCTVKTEWLDGKHVVFGRVVEGLDVVKAVESNGSQ-SGKPVKDCMIADCGQLK 172 (173)
T ss_dssp CCCSCCCSTTEEEECCSSTTCBSSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHTTCCT-TSCCSSCEEEEEEEEEC
T ss_pred ccccCCCCCeEEEEeeCCCCCcceEEEEEcCCccccCCCeeEEEEEecCHHHHHHHHhCCCC-CCCCCCCEEEEEeEEEc
Confidence 57899999999999999999999999999999999999999999999999999999999984 68999999999999984
No 22
>2z6w_A Peptidyl-prolyl CIS-trans isomerase; isomerase-immunosuppressant complex, immunosuppressant, cyclophilin D; HET: BMT MLE CIT; 0.96A {Homo sapiens} SCOP: b.62.1.1 PDB: 3rcg_A* 3r49_A* 3r54_A 3r56_A* 3r57_A* 3r59_A* 3rcf_A* 3r4g_A* 3rci_X* 3rck_X* 3rcl_A* 3rd9_X* 3rda_X* 3rdb_A* 3rdc_A* 2bit_X 2biu_X 3qyu_A 3k0m_A 1ak4_A* ...
Probab=100.00 E-value=4.3e-44 Score=341.48 Aligned_cols=153 Identities=43% Similarity=0.746 Sum_probs=144.1
Q ss_pred ceEEEEE---EeCeeEEEEeCCCCChhhHHHHHHHHh--ccc-cCCceEEEeecCcEEEecCCC-CCCCCCCccCCCCCC
Q 007574 348 KGYVQLH---TTHGDLNIELHCDITPRSCENFITLCE--RGY-YNGVAFHRSIRNFMIQGGDPT-GTGRGGESIWGKPFK 420 (597)
Q Consensus 348 ~~~V~l~---T~~G~I~IEL~~d~aP~tv~NFl~L~~--~g~-Y~gt~fhRvi~~f~IQgGdpt-g~g~gg~si~g~~f~ 420 (597)
..|..+. |+.|+|+||||++.||+||+||+.||+ .|| |+|+.||||+++|||||||++ ++|.|++++||..|+
T Consensus 5 ~v~~di~i~~t~~G~i~ieL~~~~aP~t~~NF~~L~~g~~g~~Y~g~~fhRvi~~f~iQgGd~~~~~g~gg~si~g~~f~ 84 (165)
T 2z6w_A 5 LVYLDVDANGKPLGRVVLELKADVVPKTAENFRALCTGEKGFGYKGSTFHRVIPSFMCQAGDFTNHNGTGGKSIYGSRFP 84 (165)
T ss_dssp EEEEEEEETTEEEEEEEEEECTTTCHHHHHHHHHHHHTTTSCCSTTCBEEEEETTTEEEECCTTTSSSSCCCBTTBSCBC
T ss_pred EEEEEEEECCEeeeEEEEEEeCCCCcHHHHHHHHHhccCCCccCcCCEEEEEECCCEEEeCCccCCCCCCCCcccCCccc
Confidence 3444443 689999999999999999999999999 999 999999999999999999996 789999999999999
Q ss_pred CcccccccCCCccEEEEecCCCCCCCcceEEeccCCCCCCCCCcEEEEEEcChHHHHHHhcCCCCCCCCCccccEEeEEE
Q 007574 421 DEVNSKLLHSGRGVVSMANSGPHTNGSQFFILYKSATHLNYKHTVFGGVVGGLTTLAAMEKVPVDENDRPLEEIKITGVT 500 (597)
Q Consensus 421 dE~~~~l~h~~rG~lsman~g~ntngSqFFItl~~~p~LD~k~tVFGrVv~G~dvL~~Ie~~~td~~~rP~~~I~I~~~~ 500 (597)
|| ++.++|+++|+|||||.||++|+|||||++.+++|||++|+|||+|++|||||++|+++++ .+++|.++|+|.+|+
T Consensus 85 dE-~~~l~h~~~G~lsmA~~gp~s~~SQFfI~~~~~~~Ldg~~~vFG~Vv~G~dvv~~I~~~~~-~~~~P~~~v~I~~~g 162 (165)
T 2z6w_A 85 DE-NFTLKHVGPGVLSMANAGPNTNGSQFFICTIKTDWLDGKHVVFGHVIEGMDVVKKIESFGS-KSGRTSKKIVITDCG 162 (165)
T ss_dssp CC-CCCSCCCSTTEEEECCSSTTCBCSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHHTCC-TTSCCSSCEEEEEEE
T ss_pred Cc-ccccccCCCCEEEEeeCCCCCcccEEEEEcCCCcccCCCeeEEEEEEcCHHHHHHHHhCCC-CCCCCCCcEEEEEeE
Confidence 99 6889999999999999999999999999999999999999999999999999999999985 588999999999999
Q ss_pred EE
Q 007574 501 VF 502 (597)
Q Consensus 501 Vl 502 (597)
++
T Consensus 163 ~l 164 (165)
T 2z6w_A 163 QL 164 (165)
T ss_dssp EC
T ss_pred EE
Confidence 87
No 23
>1qng_A Peptidyl-prolyl CIS-trans isomerase; isomerase-immunosuppressant complex, cyclophilin-cyclosporin complex, immunosuppressant, cyclophilin; HET: BMT; 2.1A {Plasmodium falciparum} SCOP: b.62.1.1 PDB: 1qnh_A*
Probab=100.00 E-value=2.7e-44 Score=344.44 Aligned_cols=146 Identities=45% Similarity=0.757 Sum_probs=140.0
Q ss_pred EeCeeEEEEeCCCCChhhHHHHHHHHh-ccc--------cCCceEEEeecCcEEEecCCC-CCCCCCCccCCCCCCCccc
Q 007574 355 TTHGDLNIELHCDITPRSCENFITLCE-RGY--------YNGVAFHRSIRNFMIQGGDPT-GTGRGGESIWGKPFKDEVN 424 (597)
Q Consensus 355 T~~G~I~IEL~~d~aP~tv~NFl~L~~-~g~--------Y~gt~fhRvi~~f~IQgGdpt-g~g~gg~si~g~~f~dE~~ 424 (597)
|+.|+|+||||++.||+||+||+.||+ .|| |+|+.||||+++|||||||++ ++|.|+++|||..|+|| +
T Consensus 15 ~~~G~i~ieL~~~~aP~t~~NF~~L~~~~g~g~~~~~~~Y~g~~FhRvi~~f~iQgGd~~~~~g~gg~si~g~~f~dE-~ 93 (170)
T 1qng_A 15 SNAGRIIFELFSDITPRTCENFRALCTGEKIGSRGKNLHYKNSIFHRIIPQFMCQGGDITNGNGSGGESIYGRSFTDE-N 93 (170)
T ss_dssp SEEEEEEEEECTTTCHHHHHHHHHHHHTCEECTTSSEECCTTCBCCEEETTTEEEECCTTTSSSSCCCBTTBSCBCCC-C
T ss_pred EeceeEEEEEcCCCCCHHHHHHHHHhccCCcCccCccceECCCEEEEEECCCEEEcCCccCCCCCCCccccCCccccc-c
Confidence 459999999999999999999999998 489 999999999999999999997 88999999999999999 6
Q ss_pred ccccCCCccEEEEecCCCCCCCcceEEeccCCCCCCCCCcEEEEEEcChHHHHHHhcCCCCCCCCCccccEEeEEEEE
Q 007574 425 SKLLHSGRGVVSMANSGPHTNGSQFFILYKSATHLNYKHTVFGGVVGGLTTLAAMEKVPVDENDRPLEEIKITGVTVF 502 (597)
Q Consensus 425 ~~l~h~~rG~lsman~g~ntngSqFFItl~~~p~LD~k~tVFGrVv~G~dvL~~Ie~~~td~~~rP~~~I~I~~~~Vl 502 (597)
+.++|+++|+|||||.|||+|+||||||+.+++|||++|+|||+|++|||||++|+++++ .+++|..+|+|.+|++|
T Consensus 94 ~~l~h~~~G~lsmAn~gp~tngSQFfIt~~~~~~Ldg~~~vFG~Vv~G~dvv~~I~~~~t-~~~~P~~~v~I~~cG~l 170 (170)
T 1qng_A 94 FNMKHDQPGLLSMANAGPNTNSSQFFITLVPCPWLDGKHVVFGKVIEGMNVVREMEKEGA-KSGYVKRSVVITDCGEL 170 (170)
T ss_dssp CCSCCCSTTEEEECCSSTTCBCSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHTTCC-TTCCCSSCEEEEEEEEC
T ss_pred cccccCCCCEEEEeecCCCCcccEEEEECCCCcccCCCeeEEEEEECCHHHHHHHHhCCC-CCCCCCCCeEEEeceeC
Confidence 789999999999999999999999999999999999999999999999999999999999 67899999999999985
No 24
>4fru_A Cyclophilin B, peptidyl-prolyl CIS-trans isomerase; cyclophilin-type ppiase, peptidyl-prolyl CIS-trans isomerase chaperone, foldase; HET: ME2 PEG; 1.10A {Equus caballus} PDB: 4frv_A* 3ich_A 3ici_A* 1cyn_A* 2esl_A* 2rmc_A* 1h0p_A 1xo7_A 1xq7_A*
Probab=100.00 E-value=2.3e-44 Score=349.36 Aligned_cols=159 Identities=43% Similarity=0.736 Sum_probs=148.7
Q ss_pred ceEEEEE---EeCeeEEEEeCCCCChhhHHHHHHHHhc--c-ccCCceEEEeecCcEEEecCCC-CCCCCCCccCCCCCC
Q 007574 348 KGYVQLH---TTHGDLNIELHCDITPRSCENFITLCER--G-YYNGVAFHRSIRNFMIQGGDPT-GTGRGGESIWGKPFK 420 (597)
Q Consensus 348 ~~~V~l~---T~~G~I~IEL~~d~aP~tv~NFl~L~~~--g-~Y~gt~fhRvi~~f~IQgGdpt-g~g~gg~si~g~~f~ 420 (597)
+.|+.|. |+.|+|+||||++.||+||+||+.||++ | ||+|+.||||+++|||||||++ ++|.|+.++||..|+
T Consensus 14 ~v~~di~i~~~~~G~i~ieL~~~~aP~t~~NF~~L~~~~~g~~Y~g~~FhRvi~~f~iQgGd~~~~~g~gg~si~g~~f~ 93 (185)
T 4fru_A 14 KVYFDLRIGDEDIGRVVIGLFGKTVPKTVDNFVALATGEKGFGYKDSKFHRVIKDFMIQGGDFTRGDGTGGKSIYGERFP 93 (185)
T ss_dssp EEEEEEEETTEEEEEEEEEECTTTSHHHHHHHHHHHHTTTSCCSTTCBCCEEETTTEEEECCTTTSSSSCCCBTTBSCBC
T ss_pred EEEEEEEECCEecceEEEEEeCCCCcHHHHHHHHHHhcCCCCeEcCCEEEEeeCCCeEEECCCCCCCCCCCccccCCccC
Confidence 4444554 6799999999999999999999999975 6 7999999999999999999988 889999999999999
Q ss_pred CcccccccCCCccEEEEecCCCCCCCcceEEeccCCCCCCCCCcEEEEEEcChHHHHHHhcCCCCCCCCCccccEEeEEE
Q 007574 421 DEVNSKLLHSGRGVVSMANSGPHTNGSQFFILYKSATHLNYKHTVFGGVVGGLTTLAAMEKVPVDENDRPLEEIKITGVT 500 (597)
Q Consensus 421 dE~~~~l~h~~rG~lsman~g~ntngSqFFItl~~~p~LD~k~tVFGrVv~G~dvL~~Ie~~~td~~~rP~~~I~I~~~~ 500 (597)
+| +..++|+++|+|||||.|+++|+|||||++.+++|||++|+|||+|++|||||++|++++++.+++|..+|+|.+|+
T Consensus 94 de-~~~~~h~~~G~lsma~~gp~t~~SQFfI~~~~~~~Ld~~~~vFG~Vv~G~dvv~~I~~~~t~~~~~P~~~v~I~~~g 172 (185)
T 4fru_A 94 DE-NFKLKHYGPGWVSMANAGKDTNGSQFFITTVKTAWLDGKHVVFGKVLEGMEVVRKVETTKTDGRDKPLKDVTIADCG 172 (185)
T ss_dssp CC-CCCSCCCSTTEEEECCSSTTCBCSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHTSCBCTTSCBSSCEEEEEEE
T ss_pred cc-ccccCcCCCeEEEEeeCCCCCcceEEEEEeCCCcccCCCccEEEEEeCCHHHHHHHHhCCCCCCCcCCCCEEEEEce
Confidence 99 67899999999999999999999999999999999999999999999999999999999999899999999999999
Q ss_pred EE--eCCCC
Q 007574 501 VF--VNPYS 507 (597)
Q Consensus 501 Vl--~dPf~ 507 (597)
++ .+||+
T Consensus 173 ~l~~~~Pf~ 181 (185)
T 4fru_A 173 KIEVEKPFA 181 (185)
T ss_dssp EEEEEEEEE
T ss_pred EEecCCCCc
Confidence 87 57885
No 25
>3pmp_A Cyclophilin A; peptidyl prolyl isomerase, isomerase-immunosuppressant compl; HET: BMT; 1.47A {Moniliophthora perniciosa} SCOP: b.62.1.1 PDB: 3o7t_A
Probab=100.00 E-value=6e-44 Score=340.30 Aligned_cols=147 Identities=39% Similarity=0.664 Sum_probs=141.7
Q ss_pred EeCeeEEEEeCCCCChhhHHHHHHHHh--ccc-cCCceEEEeecCcEEEecC-CCCCCCCCCccCCCCCCCcccccccCC
Q 007574 355 TTHGDLNIELHCDITPRSCENFITLCE--RGY-YNGVAFHRSIRNFMIQGGD-PTGTGRGGESIWGKPFKDEVNSKLLHS 430 (597)
Q Consensus 355 T~~G~I~IEL~~d~aP~tv~NFl~L~~--~g~-Y~gt~fhRvi~~f~IQgGd-ptg~g~gg~si~g~~f~dE~~~~l~h~ 430 (597)
|+.|+|+||||++.||+||+||+.||+ .|| |+|+.||||+++||||||| +.++|.|+.++||.+|++| ++.++|+
T Consensus 14 t~~G~i~ieL~~~~aP~t~~nF~~L~~g~~g~~Y~g~~fhRvi~~f~iQgGd~~~~~g~gg~si~g~~~~dE-~~~l~h~ 92 (164)
T 3pmp_A 14 KPEGRIVFKLYDEAVPKTAKNFRELATGQHGFGYKDSIFHRVIPQFMLQGGDFTRHNGTGGKSIYGEKFADE-NFQVKHT 92 (164)
T ss_dssp EEEEEEEEEECTTTCHHHHHHHHHHHHTTTSCSSTTCBEEEEETTTEEEECCTTTSSSSCCCBTTBSCBCCC-CCCSCCC
T ss_pred EEeeEEEEEEeCCCCcHHHHHHHHHhcccCCCcccCCEEEEEECCCeEEeCCCCCCCCCCCcccCCcccccc-ccccCcC
Confidence 899999999999999999999999999 889 9999999999999999999 5689999999999999999 7899999
Q ss_pred CccEEEEecCCCCCCCcceEEeccCCCCCCCCCcEEEEEEcChHHHHHHhcCCCCCCCCCccccEEeEEEEEe
Q 007574 431 GRGVVSMANSGPHTNGSQFFILYKSATHLNYKHTVFGGVVGGLTTLAAMEKVPVDENDRPLEEIKITGVTVFV 503 (597)
Q Consensus 431 ~rG~lsman~g~ntngSqFFItl~~~p~LD~k~tVFGrVv~G~dvL~~Ie~~~td~~~rP~~~I~I~~~~Vl~ 503 (597)
++|+|||||.+|++|+|||||++.+++|||++|+|||+|++|||||++|++++++ +++|..+|+|.+|++|.
T Consensus 93 ~~G~lsma~~g~~t~~SQFfIt~~~~~~Ld~~~~vFG~Vv~G~~vv~~I~~~~~~-~~~P~~~v~I~~cg~l~ 164 (164)
T 3pmp_A 93 KPGLLSMANAGANTNGSQFFITTVPTSWLDGKHVVFGEVIEGLDIVRKVEGKGSA-SGKTNATIKITDCGTVA 164 (164)
T ss_dssp STTEEEECBSSTTCBCSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHTTCCT-TCCCSSCEEEEEEEEC-
T ss_pred CCcEEEEeeCCCCCcccEEEEECCCChhhCCCccEEEEEeCCHHHHHHHHhCCCC-CCCcccCEEEEeCeEEC
Confidence 9999999999999999999999999999999999999999999999999999986 78999999999999974
No 26
>2poy_A Peptidyl-prolyl CIS-trans isomerase; isomerase-immunosuppressant complex, immunosuppressant, cyclophilin, isomerase, S genomics, structural genomics consortium; HET: BMT; 1.80A {Cryptosporidium parvum iowa II} PDB: 2plu_A*
Probab=100.00 E-value=1.3e-43 Score=343.82 Aligned_cols=152 Identities=45% Similarity=0.752 Sum_probs=141.0
Q ss_pred ceEEEEE---EeCeeEEEEeCCCCChhhHHHHHHHHh--ccc--------cCCceEEEeecCcEEEecCCC-CCCCCCCc
Q 007574 348 KGYVQLH---TTHGDLNIELHCDITPRSCENFITLCE--RGY--------YNGVAFHRSIRNFMIQGGDPT-GTGRGGES 413 (597)
Q Consensus 348 ~~~V~l~---T~~G~I~IEL~~d~aP~tv~NFl~L~~--~g~--------Y~gt~fhRvi~~f~IQgGdpt-g~g~gg~s 413 (597)
..|+.+. |+.|+|+||||++.||+||+||+.||+ .|| |+|+.||||+++|||||||++ ++|.|++|
T Consensus 21 ~v~~di~i~~t~~G~I~ieL~~~~aP~t~~NF~~L~~g~~g~~~~~~~~~Y~g~~FhRVi~~f~iQgGd~~~~~G~gg~s 100 (186)
T 2poy_A 21 VVYFDISIGQTPAGRITMELFADKVPITAENFRALCTGEKGMGQSGKPLCYTGSFFHRIIPQFMIQGGDFTRGDGTGGES 100 (186)
T ss_dssp EEEEEEEETTEEEEEEEEEECTTTCHHHHHHHHHHHHTTTCBCTTSSBSCCTTCBCCEEETTTEEEECCTTTSSSSCCCC
T ss_pred EEEEEEeECCEecccEEEEEeCCCCcHHHHHHHHHhcccCCccccCccceECCCEEEEEeCCCEEEeCCCCCCCCCCCCc
Confidence 4444444 679999999999999999999999996 588 999999999999999999987 78999999
Q ss_pred cCCCCCCCcccccccCCCccEEEEecCCCCCCCcceEEeccCCCCCCCCCcEEEEEEcChHHHHHHhcCCCCCCCCCccc
Q 007574 414 IWGKPFKDEVNSKLLHSGRGVVSMANSGPHTNGSQFFILYKSATHLNYKHTVFGGVVGGLTTLAAMEKVPVDENDRPLEE 493 (597)
Q Consensus 414 i~g~~f~dE~~~~l~h~~rG~lsman~g~ntngSqFFItl~~~p~LD~k~tVFGrVv~G~dvL~~Ie~~~td~~~rP~~~ 493 (597)
|||..|+|| +..++|+++|+|||||.|||+|+||||||+.+++|||++|+|||+|++|||||++|+++++ .+++|..+
T Consensus 101 i~g~~f~dE-~~~l~h~~~G~lsMAn~gpntngSQFFIt~~~~~~LDg~~tVFG~Vv~Gmdvv~~I~~~~t-~~~~P~~~ 178 (186)
T 2poy_A 101 IYGSKFRDE-NFVYTHDAPFLLSMANAGPNTNGSQFFITTVPCPWLDGKHVVFGKVLEGMEVVKSIEKCGS-QNGKPTKS 178 (186)
T ss_dssp TTC-CBCCC-CCCSCCCSTTEEEECCSSTTCBCSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHHTCC-TTSCCSSC
T ss_pred cCCCcccCc-ccccccCCCcEEEEeeCCCCCcccEEEEECCCCcccCCCeeEEEEEecCHHHHHHHHhCCC-CCCCCCCC
Confidence 999999999 5789999999999999999999999999999999999999999999999999999999998 57899999
Q ss_pred cEEeEEEE
Q 007574 494 IKITGVTV 501 (597)
Q Consensus 494 I~I~~~~V 501 (597)
|+|.+|++
T Consensus 179 v~I~~cG~ 186 (186)
T 2poy_A 179 VCITASGV 186 (186)
T ss_dssp EEEEEEEC
T ss_pred EEEEeCCC
Confidence 99999984
No 27
>2c3b_A Ppiase, cyclophilin; isomerase, 3D domain swapping, misfolding, Asp F 11, allergen, rotamase; 1.85A {Aspergillus fumigatus} SCOP: b.62.1.1
Probab=100.00 E-value=2.6e-44 Score=345.14 Aligned_cols=149 Identities=40% Similarity=0.666 Sum_probs=114.0
Q ss_pred EEEeCeeEEEEeCCCCChhhHHHHHHHHh--ccc-cCCceEEEeecCcEEEecC-CCCCCCCCCccCCCCCCCccccccc
Q 007574 353 LHTTHGDLNIELHCDITPRSCENFITLCE--RGY-YNGVAFHRSIRNFMIQGGD-PTGTGRGGESIWGKPFKDEVNSKLL 428 (597)
Q Consensus 353 l~T~~G~I~IEL~~d~aP~tv~NFl~L~~--~g~-Y~gt~fhRvi~~f~IQgGd-ptg~g~gg~si~g~~f~dE~~~~l~ 428 (597)
+.|+.|+|+||||++.||+||+||+.||+ .|| |+|+.||||+++||||||| +.++|.|++||||.+|+|| ++.++
T Consensus 17 ~~T~~G~i~ieL~~~~aP~t~~NF~~L~~g~~g~~Y~g~~fhRvi~~f~iQgGd~~~~~g~gg~si~g~~f~dE-~~~~~ 95 (172)
T 2c3b_A 17 AETKVGRIVFNLFDKDVPKTAKNFRELCKRPAGEGYRESTFHRIIPNFMIQGGDFTRGNGTGGRSIYGDKFADE-NFSRK 95 (172)
T ss_dssp SCCEEEEEEEEECTTTSHHHHHHHHHHHHSCTTTSSTTCBCCEEETTTEEEECC-----------------------CHH
T ss_pred eecccccEEEEEcCCCCcHHHHHHHHHhccCCCcccCCCEEEEEeCCCEEEeCCcCCCCCCCCcccCCCcccCc-ccccc
Confidence 35889999999999999999999999998 778 9999999999999999999 7799999999999999999 78899
Q ss_pred CCCccEEEEecCCCCCCCcceEEeccCCCCCCCCCcEEEEEEc--ChHHHHHHhcCCCCCCC-CCccccEEeEEEEE
Q 007574 429 HSGRGVVSMANSGPHTNGSQFFILYKSATHLNYKHTVFGGVVG--GLTTLAAMEKVPVDEND-RPLEEIKITGVTVF 502 (597)
Q Consensus 429 h~~rG~lsman~g~ntngSqFFItl~~~p~LD~k~tVFGrVv~--G~dvL~~Ie~~~td~~~-rP~~~I~I~~~~Vl 502 (597)
|+++|+|||||.|||+|+|||||++.+++|||++|+|||+|++ |||||++|++++++..+ +|.++|+|.+|++|
T Consensus 96 h~~~G~lsmA~~gp~t~gSQFfIt~~~~~~LDg~~tvFG~Vv~~~G~dvv~~I~~~~t~~~~~~P~~~v~I~~cG~l 172 (172)
T 2c3b_A 96 HDKKGILSMANAGPNTNGSQFFITTAVTSWLDGKHVVFGEVADEKSYSVVKEIEALGSSSGSVRSNTRPKIVNCGEL 172 (172)
T ss_dssp HHHTCEEEEC---------CEEEECSCCTTCCSCCEEEEEECSHHHHHHHHHHHTTCCTTSCCCSSSCCEEEEEEEC
T ss_pred cCCCeEEEEeeCCCCCcccEEEEECCCCCccCCCeeEEEEEEecCCHHHHHHHHhCCCCCCCccCCCCeEEEeCeeC
Confidence 9999999999999999999999999999999999999999999 99999999999998755 99999999999975
No 28
>3s6m_A Peptidyl-prolyl CIS-trans isomerase; seattle structural genomics center for infectious disease; 1.65A {Burkholderia pseudomallei} SCOP: b.62.1.1 PDB: 3t1u_A*
Probab=100.00 E-value=2e-43 Score=337.66 Aligned_cols=151 Identities=33% Similarity=0.547 Sum_probs=141.2
Q ss_pred eEEEEEEeCeeEEEEeCCCCChhhHHHHHHHHhccccCCceEEEeecCcEEEecCCCCCCCCCCccCCCCCCCccccccc
Q 007574 349 GYVQLHTTHGDLNIELHCDITPRSCENFITLCERGYYNGVAFHRSIRNFMIQGGDPTGTGRGGESIWGKPFKDEVNSKLL 428 (597)
Q Consensus 349 ~~V~l~T~~G~I~IEL~~d~aP~tv~NFl~L~~~g~Y~gt~fhRvi~~f~IQgGdptg~g~gg~si~g~~f~dE~~~~l~ 428 (597)
-.|.|+|+.|+|+||||++.||+||+||+.||+.+||+|+.||||+++|||||||+++.+ +.+.|+.+|++|+...+.
T Consensus 4 ~~v~l~T~~G~i~ieL~~~~aP~t~~NF~~L~~~g~Y~g~~FhRvi~~f~iQgGd~~~~~--~~~~~~~~~~~E~~~~l~ 81 (167)
T 3s6m_A 4 SMVELHTNHGVIKLELDEAKAPKTVENFLNYVKKGHYDGTIFHRVINGFMIQGGGFEPGL--KQKPTDAPIANEANNGLK 81 (167)
T ss_dssp CEEEEEETTEEEEEEECTTTCHHHHHHHHHHHHHTTTTTEECCEEETTTEEEESSEETTT--EECCCCCCBCCCGGGCCC
T ss_pred cEEEEEeCCceEEEEEeCCCCcHHHHHHHHHhhhcccCCCEeEEecCCcEEEeccccCCC--CCCCCCCccCCccccccc
Confidence 479999999999999999999999999999999999999999999999999999998543 346789999999877777
Q ss_pred CCCccEEEEec-CCCCCCCcceEEeccCCCCCCCC--------CcEEEEEEcChHHHHHHhcCCCCC----CCCCccccE
Q 007574 429 HSGRGVVSMAN-SGPHTNGSQFFILYKSATHLNYK--------HTVFGGVVGGLTTLAAMEKVPVDE----NDRPLEEIK 495 (597)
Q Consensus 429 h~~rG~lsman-~g~ntngSqFFItl~~~p~LD~k--------~tVFGrVv~G~dvL~~Ie~~~td~----~~rP~~~I~ 495 (597)
| .+|+||||| .+||+|+|||||++.+++|||++ |+|||+|++|||||++|++++++. +++|.++|+
T Consensus 82 ~-~~G~lsmA~~~~p~t~gSQFfI~~~~~~~Ld~~~~~~~~~~~~VFG~Vv~G~dvv~~I~~~~t~~~~~~~~~P~~~v~ 160 (167)
T 3s6m_A 82 N-DTYTIAMARTNDPHSATAQFFINVNDNEFLNHSSPTPQGWGYAVFGKVVEGQDIVDKIKAVKTGSKGFHQDVPNDDVV 160 (167)
T ss_dssp C-CTTEEEECCCSSTTCBCSCEEEESSCCGGGSCCSSSTTTCCCCEEEEEEECHHHHHHHTTSCBBC---CBTCBSSCCE
T ss_pred C-CccEEEEecCCCCCCccceEEEEcCCchhcCCcccccCCCCceEEEEEEcCHHHHHHHHcCCcCCCcccCCCcCCCeE
Confidence 7 799999999 68999999999999999999998 999999999999999999999987 689999999
Q ss_pred EeEEEEE
Q 007574 496 ITGVTVF 502 (597)
Q Consensus 496 I~~~~Vl 502 (597)
|.+|.|+
T Consensus 161 I~~~~il 167 (167)
T 3s6m_A 161 IEKAVVV 167 (167)
T ss_dssp EEEEEEC
T ss_pred EEEEEEC
Confidence 9999985
No 29
>2ose_A Probable peptidyl-prolyl CIS-trans isomerase; cyclophilin; 2.04A {Mimivirus}
Probab=100.00 E-value=7.9e-44 Score=356.72 Aligned_cols=152 Identities=25% Similarity=0.421 Sum_probs=139.8
Q ss_pred EeCeeEEEEeCCCCChhhHHHHHHHHhc-----------------c--c-cCCceEEEeecCcEEEecC-CCCCCCCCCc
Q 007574 355 TTHGDLNIELHCDITPRSCENFITLCER-----------------G--Y-YNGVAFHRSIRNFMIQGGD-PTGTGRGGES 413 (597)
Q Consensus 355 T~~G~I~IEL~~d~aP~tv~NFl~L~~~-----------------g--~-Y~gt~fhRvi~~f~IQgGd-ptg~g~gg~s 413 (597)
|+.|+|+||||++.||+||+||+.||++ | | |+|+.|||||++||||||| +.++|+||+|
T Consensus 26 t~~G~I~ieL~~d~aP~tv~NF~~L~~g~~~~~~p~~~~~~~~~~G~~~~Y~gt~FHRVi~~FmiQgGd~~~g~G~Gg~s 105 (234)
T 2ose_A 26 EIIGRLQIKLFRDAFPAGVENFVQLTNGKTYRVNSNGTGKYKYNRHINRTYEGCKFHNVLHNNYIVSGDIYNSNGSSAGT 105 (234)
T ss_dssp EEEEEEEEEECGGGCHHHHHHHHHHHHTCCCC---------------CCCSTTCBCCEEETTTEEEECCCC----CCCCC
T ss_pred cccceEEEEEcCCCCcHHHHHHHHHhcCCccccccccccccccccCCceEECCcEEEEEECCCEEEcCCccCCCCCCCcc
Confidence 9999999999999999999999999984 4 7 9999999999999999999 5689999999
Q ss_pred cCCCC-----CCCcccccccCCCccEEEEec----CCCCCCCcceEEeccC------CCCCCCCCcEEEEEEcChHHHHH
Q 007574 414 IWGKP-----FKDEVNSKLLHSGRGVVSMAN----SGPHTNGSQFFILYKS------ATHLNYKHTVFGGVVGGLTTLAA 478 (597)
Q Consensus 414 i~g~~-----f~dE~~~~l~h~~rG~lsman----~g~ntngSqFFItl~~------~p~LD~k~tVFGrVv~G~dvL~~ 478 (597)
|||.. |+ + +.++|+++|+||||| .||++||||||||+.+ ++|||++|+|||+|++|||||++
T Consensus 106 iyg~~~~p~~f~-~--~~l~h~~~G~lsMAn~~~~~gpntngSQFFIt~~~~~~~~g~p~LDg~~tVFG~Vv~GmdVv~~ 182 (234)
T 2ose_A 106 VYCDEPIPPVFG-D--YFYPHESKGLLSLVPYTDESGNRYYDSTFMITLDDIRPSNVLDELDRDQVVIGQVYGGLDVLDK 182 (234)
T ss_dssp TTTTCCBCCCCC-S--CCCCSCSTTEEEECCEECTTSCEEBCSCEEEESSCCCTTSSGGGSCTTSEEEEEEEECHHHHHH
T ss_pred ccCCccCccccc-C--cCccCCCCCEEEEecccccCCCCCccceEEEEecCccccCCCcccCCCeeEEEEEeCCHHHHHH
Confidence 99998 66 3 579999999999999 9999999999999999 99999999999999999999999
Q ss_pred HhcCCCCCCCCCccccEEeEEEEEeCCCCCC
Q 007574 479 MEKVPVDENDRPLEEIKITGVTVFVNPYSEP 509 (597)
Q Consensus 479 Ie~~~td~~~rP~~~I~I~~~~Vl~dPf~~~ 509 (597)
|++++++.+++|..+|+|.+|+++.+||++.
T Consensus 183 I~~~~t~~~~~P~~~V~I~~~~~l~~p~~~~ 213 (234)
T 2ose_A 183 INSMIKPYAGRKYPTFSIGKCGAYLDSSQAQ 213 (234)
T ss_dssp HHHHTCCCTTCCCCCEEEEEEEECCCHHHHC
T ss_pred HHhCCcCCCCCccCCEEEEEEEEecCCcccc
Confidence 9999999889999999999999999998543
No 30
>1lop_A Cyclophilin A; rotamase, isomerase-isomerase inhibitor complex; HET: NIT; 1.80A {Escherichia coli} SCOP: b.62.1.1 PDB: 2nul_A 2rs4_A
Probab=100.00 E-value=1.1e-43 Score=338.41 Aligned_cols=149 Identities=37% Similarity=0.632 Sum_probs=139.3
Q ss_pred EEEEEeCeeEEEEeCCCCChhhHHHHHHHHhccccCCceEEEeecCcEEEecCCCCCCCCCCccCCCCCCCcccccccCC
Q 007574 351 VQLHTTHGDLNIELHCDITPRSCENFITLCERGYYNGVAFHRSIRNFMIQGGDPTGTGRGGESIWGKPFKDEVNSKLLHS 430 (597)
Q Consensus 351 V~l~T~~G~I~IEL~~d~aP~tv~NFl~L~~~g~Y~gt~fhRvi~~f~IQgGdptg~g~gg~si~g~~f~dE~~~~l~h~ 430 (597)
|.|+|+.|+|+||||++.||+||+||+.||+.|||+|+.||||+++|||||||++.. .|.++||.+|+||+...+.|
T Consensus 2 v~l~T~~G~i~ieL~~~~aP~t~~NF~~L~~~g~Y~g~~FhRvi~~f~iQgGd~~~~--~g~~~~g~~~~dE~~~~l~~- 78 (164)
T 1lop_A 2 VTFHTNHGDIVIKTFDDKAPETVKNFLDYCREGFYNNTIFHRVINGFMIQGGGFEPG--MKQKATKEPIKNEANNGLKN- 78 (164)
T ss_dssp EEEEETTEEEEEEECTTTSHHHHHHHHHHHHTTTTTTEECCEEETTTEEEESSEETT--TEECCCCCCBCCCCCSSCCC-
T ss_pred EEEEeCCCCEEEEEeCCCCcHHHHHHHHHHhcCCCCCCEEEEEeCCceEecCCcccC--CCcCCCCCcccccccccccc-
Confidence 789999999999999999999999999999999999999999999999999999732 25788999999997777888
Q ss_pred CccEEEEecC-CCCCCCcceEEeccCCCCCCCC--------CcEEEEEEcChHHHHHHhcCCCCC----CCCCccccEEe
Q 007574 431 GRGVVSMANS-GPHTNGSQFFILYKSATHLNYK--------HTVFGGVVGGLTTLAAMEKVPVDE----NDRPLEEIKIT 497 (597)
Q Consensus 431 ~rG~lsman~-g~ntngSqFFItl~~~p~LD~k--------~tVFGrVv~G~dvL~~Ie~~~td~----~~rP~~~I~I~ 497 (597)
.+|+|||||. +||+|+|||||++.+++|||++ |+|||+|++|||||++|++++++. +++|.++|+|.
T Consensus 79 ~~G~lsmA~~~~p~s~gSQFfI~~~~~~~Ld~~~~~~~~~~~tvFG~Vv~G~dvv~~I~~~~t~~~~~~~~~P~~~v~I~ 158 (164)
T 1lop_A 79 TRGTLAMARTQAPHSATAQFFINVVDNDFLNFSGESLQGWGYCVFAEVVDGMDEVDKIKGVATGRSGMHQDVPKEDVIIE 158 (164)
T ss_dssp CTTEEEECCCSSTTCBCSCEEEESSCCGGGSCCSSSTTTSCCCEEEEEEECHHHHHHHHTSCEEEETTEEEEESSCCEEE
T ss_pred CccEEEEeecCCCCCccceEEEEcCCccccCCccccccCCceEEEEEEecCHHHHHHHHhCCcCCccccCCCcCCCeEEE
Confidence 5999999974 8999999999999999999998 999999999999999999999975 58999999999
Q ss_pred EEEEE
Q 007574 498 GVTVF 502 (597)
Q Consensus 498 ~~~Vl 502 (597)
+|+|+
T Consensus 159 ~~~v~ 163 (164)
T 1lop_A 159 SVTVS 163 (164)
T ss_dssp EEEEC
T ss_pred EEEEe
Confidence 99986
No 31
>1z81_A Cyclophilin; structural genomics, structural genomics consortium, SGC, isomerase; 2.80A {Plasmodium yoelii yoelii} SCOP: b.62.1.1
Probab=100.00 E-value=3.4e-43 Score=350.31 Aligned_cols=147 Identities=40% Similarity=0.666 Sum_probs=141.4
Q ss_pred EeCeeEEEEeCCCCChhhHHHHHHHHhcc--------ccCCceEEEeecCcEEEecCCC-CCCCCCCccCCCCCCCcccc
Q 007574 355 TTHGDLNIELHCDITPRSCENFITLCERG--------YYNGVAFHRSIRNFMIQGGDPT-GTGRGGESIWGKPFKDEVNS 425 (597)
Q Consensus 355 T~~G~I~IEL~~d~aP~tv~NFl~L~~~g--------~Y~gt~fhRvi~~f~IQgGdpt-g~g~gg~si~g~~f~dE~~~ 425 (597)
|+.|+|+||||++.||+||+||+.||+.+ ||+|+.|||||++|||||||++ ++|.|+++|||..|+|| ++
T Consensus 71 t~~G~I~ieL~~d~aP~tv~NF~~L~~~~~g~~g~~~~Y~gt~FHRVi~~FmiQgGD~~~g~G~Gg~siyg~~f~dE-~~ 149 (229)
T 1z81_A 71 NFLGKFKFELFQNIVPKTSENFRQFCTGEYKVNNLPVGYKNTIFHRVIKEFMIQGGDFINHNGSGSLSIYGEKFDDE-NF 149 (229)
T ss_dssp EEEEEEEEEECTTTCHHHHHHHHHHHHTCCBSSSSBCSSTTEECCEEETTTEEEECCTTTSSSCCCCBTTBSCCCCC-CC
T ss_pred eecccEEEEEcCCCCCHHHHHHHHHhhCCCCCcCCCceECCCEEEEEeCCCEEEcCCCcCCCCCCCCccCCCccccc-cc
Confidence 56999999999999999999999999887 7999999999999999999996 88999999999999999 67
Q ss_pred cccCCCccEEEEecCCCCCCCcceEEeccCCCCCCCCCcEEEEEE--cChHHHHHHhcCCCCCC-CCCccccEEeEEEEE
Q 007574 426 KLLHSGRGVVSMANSGPHTNGSQFFILYKSATHLNYKHTVFGGVV--GGLTTLAAMEKVPVDEN-DRPLEEIKITGVTVF 502 (597)
Q Consensus 426 ~l~h~~rG~lsman~g~ntngSqFFItl~~~p~LD~k~tVFGrVv--~G~dvL~~Ie~~~td~~-~rP~~~I~I~~~~Vl 502 (597)
.++|+++|+|||||.|||+|+||||||+.+++|||++|+|||+|+ +|||||++|++++++.. ++|.++|+|.+|++|
T Consensus 150 ~l~h~~~G~LsMAn~gpntngSQFFIt~~~~~~LDg~~tVFG~Vv~~eGmdVv~~I~~~~t~~~~~~P~~~V~I~~cG~l 229 (229)
T 1z81_A 150 DIKHDKEGLLSMANSGPNTNGCQFFITTKKCEWLDGKNVVFGRIIDNDSLLLLKKIENVSVTPYIYKPKIPINVVECGEL 229 (229)
T ss_dssp CSCCCSTTEEEECCSSSSCCCSCEEEESSCCGGGBTTBCEEEEECSHHHHHHHHHHHHSCBCTTTCCBSSCEEEEEEEEC
T ss_pred ccccCCCcEEEeccCCCCCcccEEEEECCCCcccCCCeeEEEEEEecCcHHHHHHHHhCCCCCCCCCCCCCeEEEeCeeC
Confidence 899999999999999999999999999999999999999999999 99999999999999986 999999999999985
No 32
>3k2c_A Peptidyl-prolyl CIS-trans isomerase; ssgcid, NIH, niaid, SBRI, UW, decode, cytoplasm, rotamase, structural genomics; HET: PG5; 1.95A {Encephalitozoon cuniculi}
Probab=100.00 E-value=1.8e-42 Score=337.86 Aligned_cols=155 Identities=42% Similarity=0.710 Sum_probs=145.8
Q ss_pred cceEEEEE---EeCeeEEEEeCCCCChhhHHHHHHHHh--ccc-cCCceEEEeecCcEEEecCC-CCCCCCCCccCCCCC
Q 007574 347 KKGYVQLH---TTHGDLNIELHCDITPRSCENFITLCE--RGY-YNGVAFHRSIRNFMIQGGDP-TGTGRGGESIWGKPF 419 (597)
Q Consensus 347 ~~~~V~l~---T~~G~I~IEL~~d~aP~tv~NFl~L~~--~g~-Y~gt~fhRvi~~f~IQgGdp-tg~g~gg~si~g~~f 419 (597)
+..|+.+. |+.|+|+||||++.||+||+||+.||+ .+| |+|+.||||+++|||||||+ .++|.|+.++||..|
T Consensus 28 p~v~~di~i~~t~~G~I~ieL~~~~aP~tv~NF~~L~~g~~g~~Y~g~~FhRvi~~f~iQgGd~~~~~g~gg~si~g~~f 107 (193)
T 3k2c_A 28 GNVYFDVYANEESLGRIVMKLEDDIVPKTAKNFRTLCERPKGEGYKGSTFHRIIPGFMVQGGDYTAHNGTGGRSIYGEKF 107 (193)
T ss_dssp TCEEEEEEETTEEEEEEEEEECTTTSHHHHHHHHHHHHSCTTSSSTTCBEEEEETTTEEEECCTTTSSSSCCCCTTSSCB
T ss_pred CEEEEEEeECCEEeeEEEEEEcCCCChHHHHHHHHHhccccCCcccCCEEEEEeCCCEEEeCCCCCCCCcCCcccCCCcc
Confidence 34566665 899999999999999999999999998 778 99999999999999999994 588999999999999
Q ss_pred CCcccccccCCCccEEEEecCCCCCCCcceEEeccCCCCCCCCCcEEEEEEcChHHHHHHhcCCCCCCCCCc--cccEEe
Q 007574 420 KDEVNSKLLHSGRGVVSMANSGPHTNGSQFFILYKSATHLNYKHTVFGGVVGGLTTLAAMEKVPVDENDRPL--EEIKIT 497 (597)
Q Consensus 420 ~dE~~~~l~h~~rG~lsman~g~ntngSqFFItl~~~p~LD~k~tVFGrVv~G~dvL~~Ie~~~td~~~rP~--~~I~I~ 497 (597)
++| ++.++|+.+|+|||||.++++|+|||||++.+++|||++|+|||+|++|||||++|++++++ +++|. .+|+|.
T Consensus 108 ~dE-~~~l~h~~~G~lsmAn~gp~t~gSQFFIt~~~~~~LDg~~tVFG~Vv~Gmdvv~~I~~~~t~-~g~P~~~~~v~I~ 185 (193)
T 3k2c_A 108 PDE-NFELKHTKEGILSMANCGAHTNGSQFFITLGKTQWLDEKHVVFGEVVEGMDVVHKIAKYGSE-SGQVKKGYRIEIR 185 (193)
T ss_dssp CCC-CCCSCCCSTTEEEECCSSTTCBCSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHTTCCT-TCCCCTTCCEEEE
T ss_pred ccc-ccccccCCCcEEEEEeCCCCCCccEEEEECCCCcccCCCccEEEEEeCCHHHHHHHHhcCCC-CCcCccCccEEEE
Confidence 999 78899999999999999999999999999999999999999999999999999999999997 67999 999999
Q ss_pred EEEEEe
Q 007574 498 GVTVFV 503 (597)
Q Consensus 498 ~~~Vl~ 503 (597)
+|++|.
T Consensus 186 ~cG~l~ 191 (193)
T 3k2c_A 186 DCGVLG 191 (193)
T ss_dssp EEEECC
T ss_pred EceEeC
Confidence 999985
No 33
>3rdd_A Peptidyl-prolyl CIS-trans isomerase A; beta barrel, cytosolic, inhibito isomerase-isomerase inhibitor complex; HET: EA4; 2.14A {Homo sapiens}
Probab=100.00 E-value=1.2e-42 Score=336.78 Aligned_cols=147 Identities=44% Similarity=0.704 Sum_probs=138.9
Q ss_pred EeCeeEEEEeCCCCChhhHHHHHHHHhccc---cCCceEEEeecCcEEEecCCC-CCCCCCCccCCCCCCCcccccccCC
Q 007574 355 TTHGDLNIELHCDITPRSCENFITLCERGY---YNGVAFHRSIRNFMIQGGDPT-GTGRGGESIWGKPFKDEVNSKLLHS 430 (597)
Q Consensus 355 T~~G~I~IEL~~d~aP~tv~NFl~L~~~g~---Y~gt~fhRvi~~f~IQgGdpt-g~g~gg~si~g~~f~dE~~~~l~h~ 430 (597)
|+.|+|+||||++.||+||+||+.||+.++ |+|+.||||+++|||||||++ ++|.|+.++||..|++| ++.++|+
T Consensus 34 ~~~G~I~ieL~~~~aP~t~~NF~~L~~~~~g~~Y~g~~FhRvi~~f~iQgGd~~~~~g~gg~si~g~~~~de-~~~l~h~ 112 (184)
T 3rdd_A 34 EPLGRVSFELFADKVPKTAENFRALSTGEKGFGYKGSCFHRIIPGFMCQGGDFTRHNGTGGKSIYGEKFEDE-NFILKHT 112 (184)
T ss_dssp EEEEEEEEEECTTTSHHHHHHHHHHHHTTTSCSSTTCBCCEEETTTEEEECCTTTSSSSCCCBTTBSCBCCC-CCCSCCC
T ss_pred EeeeEEEEEEeCCCCcHHHHHHHHHhccCcCcccCCCEEEEccCCcEEEeCCCCCCCCCCCcccCCCcccCc-ccccccC
Confidence 459999999999999999999999997654 999999999999999999954 88999999999999999 6789999
Q ss_pred CccEEEEecCCCCCCCcceEEeccCCCCCCCCCcEEEEEEcChHHHHHHhcCCCCCCCCCccccEEeEEEEEe
Q 007574 431 GRGVVSMANSGPHTNGSQFFILYKSATHLNYKHTVFGGVVGGLTTLAAMEKVPVDENDRPLEEIKITGVTVFV 503 (597)
Q Consensus 431 ~rG~lsman~g~ntngSqFFItl~~~p~LD~k~tVFGrVv~G~dvL~~Ie~~~td~~~rP~~~I~I~~~~Vl~ 503 (597)
++|+|||||.||++|+|||||++.++++||++|+|||+|++|||||++|++++++ +++|..+|+|.+|++|.
T Consensus 113 ~~G~lsmA~~gp~s~gSQFfIt~~~~~~LDg~~tVFG~Vv~G~dvv~~I~~~~~~-~g~P~~~v~I~~cG~l~ 184 (184)
T 3rdd_A 113 GPGILSMANAGPNTNGSQFFICTAKTEWLDGKHVVFGKVKEGMNIVEAMERFGSR-NGKTSKKITIADCGQLE 184 (184)
T ss_dssp STTEEEECCSSTTCBSSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHTTCCT-TSCCSSCEEEEEEEECC
T ss_pred CCcEEEEEeCCCCCcccEEEEEeCCchhhCCCceEEEEEecCHHHHHHHHhcCCC-CCCCcCCeEEEeCeEEC
Confidence 9999999999999999999999999999999999999999999999999999874 78999999999999973
No 34
>1v9t_A Cyclophilin B; beta barrel, isomerase-isomerase inhibitor complex; HET: NIT; 1.70A {Escherichia coli} SCOP: b.62.1.1 PDB: 1j2a_A* 1vai_A* 1clh_A
Probab=100.00 E-value=6.6e-43 Score=333.72 Aligned_cols=153 Identities=33% Similarity=0.540 Sum_probs=140.1
Q ss_pred cceEEEEEEeCeeEEEEeCCCCChhhHHHHHHHHhccccCCceEEEeecCcEEEecCCCCCCCCCCccCCCCCCCccccc
Q 007574 347 KKGYVQLHTTHGDLNIELHCDITPRSCENFITLCERGYYNGVAFHRSIRNFMIQGGDPTGTGRGGESIWGKPFKDEVNSK 426 (597)
Q Consensus 347 ~~~~V~l~T~~G~I~IEL~~d~aP~tv~NFl~L~~~g~Y~gt~fhRvi~~f~IQgGdptg~g~gg~si~g~~f~dE~~~~ 426 (597)
....|.|+|+.|+|+||||++.||+||+||+.||+.|||+|+.||||+++|||||||+++.+. ...|+.+|+||....
T Consensus 3 ~~~~v~~~t~~G~i~ieL~~~~aP~t~~NF~~L~~~g~Y~g~~FhRvi~~f~iQgGd~~~~~~--~~~~g~~~~dE~~~~ 80 (166)
T 1v9t_A 3 GDPHVLLTTSAGNIELELDKQKAPVSVQNFVDYVNSGFYNNTTFHRVIPGFMIQGGGFTEQMQ--QKKPNPPIKNEADNG 80 (166)
T ss_dssp CSCEEEEEETTEEEEEEECTTTCHHHHHHHHHHHHTTTTTTCBEEEEETTTEEEESSBCTTCC--BCCCCCCBCCCGGGS
T ss_pred CCeEEEEEeCCccEEEEEcCCCCcHHHHHHHHHhccCCCCCCEEEEEECCcEEEcCCcCcCCC--CCCCCCccccccccc
Confidence 345899999999999999999999999999999999999999999999999999999986543 345789999997666
Q ss_pred ccCCCccEEEEecC-CCCCCCcceEEeccCCCCCCCC-----CcEEEEEEcChHHHHHHhcCCCCC----CCCCccccEE
Q 007574 427 LLHSGRGVVSMANS-GPHTNGSQFFILYKSATHLNYK-----HTVFGGVVGGLTTLAAMEKVPVDE----NDRPLEEIKI 496 (597)
Q Consensus 427 l~h~~rG~lsman~-g~ntngSqFFItl~~~p~LD~k-----~tVFGrVv~G~dvL~~Ie~~~td~----~~rP~~~I~I 496 (597)
+.| .+|+|||||. +||+|+|||||++.+++|||++ |+|||+|++|||||++|++++++. .++|..+|+|
T Consensus 81 l~~-~~G~lsmA~~~~p~t~gSQFfI~~~~~~~Ld~~~~~~~~tvFG~Vv~G~dvv~~I~~~~~~~~~~~~~~P~~~v~I 159 (166)
T 1v9t_A 81 LRN-TRGTIAMARTADKDSATSQFFINVADNAFLDHGQRDFGYAVFGKVVKGMDVADKISQVPTHDVGPYQNVPSKPVVI 159 (166)
T ss_dssp CCC-CTTEEEECCCSSTTCBCSCEEEESSCCGGGSCCSSCCCCCEEEEEEECHHHHHHHHTSCEEEETTEEEEESSCCBE
T ss_pred ccC-CceEEEEeecCCCCCccceEEEEeCCccccCCccCcCCeeEEEEEecCHHHHHHHHhCCCCCCCccCCCcCCCeEE
Confidence 655 6999999997 6999999999999999999998 999999999999999999999986 4799999999
Q ss_pred eEEEEE
Q 007574 497 TGVTVF 502 (597)
Q Consensus 497 ~~~~Vl 502 (597)
.+|.|+
T Consensus 160 ~~~~v~ 165 (166)
T 1v9t_A 160 LSATVL 165 (166)
T ss_dssp EEEEEC
T ss_pred EEEEEe
Confidence 999986
No 35
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=100.00 E-value=4.5e-41 Score=356.76 Aligned_cols=154 Identities=42% Similarity=0.717 Sum_probs=145.6
Q ss_pred EEEEEEe-----CeeEEEEeCCCCChhhHHHHHHHHhc--------c---ccCCceEEEeecCcEEEecCCC-CCCCCCC
Q 007574 350 YVQLHTT-----HGDLNIELHCDITPRSCENFITLCER--------G---YYNGVAFHRSIRNFMIQGGDPT-GTGRGGE 412 (597)
Q Consensus 350 ~V~l~T~-----~G~I~IEL~~d~aP~tv~NFl~L~~~--------g---~Y~gt~fhRvi~~f~IQgGdpt-g~g~gg~ 412 (597)
.|.|.|+ .|+|+||||++.||+||+||+.||++ | ||+|+.||||||+|||||||++ ++|+||+
T Consensus 17 ~v~~~~~~~~~~~G~i~~~l~~~~~P~t~~nf~~l~~~~~~~~~~~g~~~~y~~~~fhrv~~~f~~q~Gd~~~~~g~g~~ 96 (370)
T 1ihg_A 17 RVFFDVDIGGERVGRIVLELFADIVPKTAENFRALCTGEKGIGPTTGKPLHFKGCPFHRIIKKFMIQGGDFSNQNGTGGE 96 (370)
T ss_dssp EEEEEEEETTEEEEEEEEEECTTTCHHHHHHHHHHHHCTTCBCTTTSSBSCCTTCBEEEEETTTEEEECCTTTSSSSCCC
T ss_pred eEEEEEEECCEecccEEEEEcCCCCchHHHHHHHHcCCCcCcCccCCCcceeCCcEeEEEECCcEEECCCCCCCCCCCCC
Confidence 4555554 89999999999999999999999987 6 7999999999999999999999 8999999
Q ss_pred ccCCCCCCCcccccccCCCccEEEEecCCCCCCCcceEEeccCCCCCCCCCcEEEEEEcChHHHHHHhcCCCCCCCCCcc
Q 007574 413 SIWGKPFKDEVNSKLLHSGRGVVSMANSGPHTNGSQFFILYKSATHLNYKHTVFGGVVGGLTTLAAMEKVPVDENDRPLE 492 (597)
Q Consensus 413 si~g~~f~dE~~~~l~h~~rG~lsman~g~ntngSqFFItl~~~p~LD~k~tVFGrVv~G~dvL~~Ie~~~td~~~rP~~ 492 (597)
+|||..|+|| ++.++|+.+|+|||||.|||+||||||||+.++||||++|+|||+|++||+||++|+.++++. ++|..
T Consensus 97 ~~~~~~~~~e-~~~~~~~~~g~l~ma~~~~~~~~sqffi~~~~~~~ld~~~~vfG~v~~g~~v~~~i~~~~~~~-~~P~~ 174 (370)
T 1ihg_A 97 SIYGEKFEDE-NFHYKHDKEGLLSMANAGSNTNGSQFFITTVPTPHLDGKHVVFGQVIKGMGVAKILENVEVKG-EKPAK 174 (370)
T ss_dssp BTTBSCBCCC-CCCBCCCSTTEEEECCSSTTCBCSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHTSCEET-TEESS
T ss_pred CCCCCCcCCC-cCCcCCCCCeEEEEeeCCCCCCCceEEEeCCCCcccCCCceEEEEEecCHHHHHHHHcCCCCC-Cccce
Confidence 9999999999 678999999999999999999999999999999999999999999999999999999999986 89999
Q ss_pred ccEEeEEEEEeCC
Q 007574 493 EIKITGVTVFVNP 505 (597)
Q Consensus 493 ~I~I~~~~Vl~dP 505 (597)
+|+|.+|+++.++
T Consensus 175 ~v~I~~~g~l~~~ 187 (370)
T 1ihg_A 175 LCVIAECGELKEG 187 (370)
T ss_dssp CEEEEEEEEECTT
T ss_pred eEEEEEEEEeccC
Confidence 9999999999765
No 36
>3rfy_A Peptidyl-prolyl CIS-trans isomerase CYP38, chloro; cyclophilin, peptidyl prolyl isomerase, ppiase, TLP,; 2.39A {Arabidopsis thaliana}
Probab=100.00 E-value=2e-36 Score=319.28 Aligned_cols=147 Identities=26% Similarity=0.424 Sum_probs=132.5
Q ss_pred CcceEEEEEEe--------CeeEEEEeCCCCChhhHHHHHHHHhccccCCceEEEeecCcEEEecCCCCCCCC-------
Q 007574 346 KKKGYVQLHTT--------HGDLNIELHCDITPRSCENFITLCERGYYNGVAFHRSIRNFMIQGGDPTGTGRG------- 410 (597)
Q Consensus 346 k~~~~V~l~T~--------~G~I~IEL~~d~aP~tv~NFl~L~~~g~Y~gt~fhRvi~~f~IQgGdptg~g~g------- 410 (597)
..+.+|.|.|+ .|+|+|+||++.||+||+||+.||+.|||+|+.|||| ++||||||||+++|.|
T Consensus 168 ~gra~V~m~t~~~~~~~~~~G~I~IeL~~d~AP~Tv~NFl~L~~~GfYdGt~FHRV-~gFmIQgGDp~g~G~G~~~~~~g 246 (369)
T 3rfy_A 168 KGRASVDMKVKIKDNPNIEDCVFRIVLDGYNAPVTAGNFVDLVERHFYDGMEIQRS-DGFVVQTGDPEGPAEGFIDPSTE 246 (369)
T ss_dssp CSEEEEEEEEECCSCSSCSEEEEEEEEETTTCHHHHHHHHHHHHTTTTTTEECEEE-EEEEECCCCCCCCCSCCCSCCCC
T ss_pred CCCeEEEEEEeccCCCcccceEEEEEEeCCCCcHHHHHHHHHhhcCCcCCCeeeee-CCeeEecCCCCCCCCCccCcccC
Confidence 46788999997 8999999999999999999999999999999999999 9999999999988776
Q ss_pred --------------CCccCCCCCCCcc----cccccCCCccEEEEecC--CCCCCCcceEEec-------cCCCCCCCCC
Q 007574 411 --------------GESIWGKPFKDEV----NSKLLHSGRGVVSMANS--GPHTNGSQFFILY-------KSATHLNYKH 463 (597)
Q Consensus 411 --------------g~si~g~~f~dE~----~~~l~h~~rG~lsman~--g~ntngSqFFItl-------~~~p~LD~k~ 463 (597)
+.++|+..|++|. .+.++|+.+|+|||||+ +||+|||||||++ .+++|||++|
T Consensus 247 ~~~~iP~E~~~~G~g~piyg~~fedegf~~~~~~L~h~~~G~LsMAns~~gPnSngSQFFItl~d~~L~~~~~~~LDgky 326 (369)
T 3rfy_A 247 KTRTVPLEIMVTGEKTPFYGSTLEELGLYKAQVVIPFNAFGTMAMAREEFENDSGSSQVFWLLKESELTPSNSNILDGRY 326 (369)
T ss_dssp CCCSSSSSSCSSSSCCSCCCSSTGGGTEEEEEEEECCCCCCCCCCSSCCCCCCCSSCCCCCCCEEEEECSCCCSSSCSCE
T ss_pred cCcccCccccccCCCCCcCCCccccccccccccccccCCCceEEEeecCCCCCCccceEEEEecccccCCCCCcccCCCe
Confidence 5789999998872 45789999999999998 8999999999999 4789999999
Q ss_pred cEEEEEEcChHHHHHHhcCCCCCCCCCccccEEeEEEEEeC
Q 007574 464 TVFGGVVGGLTTLAAMEKVPVDENDRPLEEIKITGVTVFVN 504 (597)
Q Consensus 464 tVFGrVv~G~dvL~~Ie~~~td~~~rP~~~I~I~~~~Vl~d 504 (597)
+|||+|++|||||++|++.. +|.++.|+.+
T Consensus 327 tVFG~VveGmdVVdkI~~GD-----------~I~sv~I~~g 356 (369)
T 3rfy_A 327 AVFGYVTDNEDFLADLKVGD-----------VIESIQVVSG 356 (369)
T ss_dssp EEEEEEEESTTGGGGCCTTC-----------EEEEEEEEEC
T ss_pred eEEEEEecCHHHHHHHhCCC-----------ceEEEEEecC
Confidence 99999999999999998742 3777777653
No 37
>2bay_A PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin ligase, E3 ligase; 1.50A {Saccharomyces cerevisiae} SCOP: g.44.1.2 PDB: 1n87_A
Probab=99.45 E-value=3.9e-14 Score=113.06 Aligned_cols=56 Identities=23% Similarity=0.514 Sum_probs=53.1
Q ss_pred ccccCCCCCCCCceec-CCCCeeeHHhHHHHHHhcCCCCCCCCCCCCCCcccccccc
Q 007574 40 YCCALTFTPFEDPVCT-ADGSVFELMSITPYIRKYGKHPVTGTPLKLEDLIPLTFHK 95 (597)
Q Consensus 40 ~~C~LSl~pl~~PV~t-~~G~ly~ke~Il~~L~k~~~~Pvtg~~l~lkdLi~l~f~k 95 (597)
++|+||+++|+|||++ ++|++||+++|++||++++++|+||++|+.+||++|++.+
T Consensus 4 ~~CpIs~~~m~dPV~~~~sG~~yer~~I~~~l~~~~~cP~t~~~L~~~~Lip~~~~~ 60 (61)
T 2bay_A 4 MLCAISGKVPRRPVLSPKSRTIFEKSLLEQYVKDTGNDPITNEPLSIEEIVEIVPSA 60 (61)
T ss_dssp CCCTTTCSCCSSEEEETTTTEEEEHHHHHHHHHHHSBCTTTCCBCCGGGCEECCCC-
T ss_pred EEecCCCCCCCCCEEeCCCCcEEcHHHHHHHHHhCCCCcCCcCCCChhhcEECccCC
Confidence 5799999999999999 8999999999999999999999999999999999999864
No 38
>2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase, UBL conjugation pathway; NMR {Mus musculus}
Probab=99.12 E-value=2.7e-11 Score=102.61 Aligned_cols=70 Identities=20% Similarity=0.192 Sum_probs=62.7
Q ss_pred CCCCCC-CccccCCCCCCCCceecCCCCeeeHHhHHHHHHhcCCCCCCCCCCCCCCccccccccccCcccc
Q 007574 33 PFKRLP-FYCCALTFTPFEDPVCTADGSVFELMSITPYIRKYGKHPVTGTPLKLEDLIPLTFHKNAEGEYH 102 (597)
Q Consensus 33 ~~~~lp-f~~C~LSl~pl~~PV~t~~G~ly~ke~Il~~L~k~~~~Pvtg~~l~lkdLi~l~f~kn~~~~~~ 102 (597)
.+..+| .+.|+||+++|.+||+++.||+||+.+|..||..+.++|++|++++..+|+++...++....|.
T Consensus 7 ~~~~~p~~~~CpI~~~~m~dPV~~~cGhtf~r~~I~~~l~~~~~cP~~~~~l~~~~l~pn~~L~~~i~~~~ 77 (85)
T 2kr4_A 7 DYSDAPDEFRDPLMDTLMTDPVRLPSGTVMDRSIILRHLLNSPTDPFNRQMLTESMLEPVPELKEQIQAWM 77 (85)
T ss_dssp CCTTCCTTTBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHHCSBCTTTCCBCCGGGCEECHHHHHHHHHHH
T ss_pred hhhcCchheECcccCchhcCCeECCCCCEECHHHHHHHHhcCCCCCCCcCCCChHhcchHHHHHHHHHHHH
Confidence 344556 8889999999999999999999999999999999999999999999999999999888766653
No 39
>1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme, KIAA0126, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.2
Probab=99.11 E-value=3.6e-11 Score=104.68 Aligned_cols=71 Identities=15% Similarity=0.191 Sum_probs=63.7
Q ss_pred CCCCCCC-CccccCCCCCCCCceecCCC-CeeeHHhHHHHHHhcCCCCCCCCCCCCCCccccccccccCcccc
Q 007574 32 TPFKRLP-FYCCALTFTPFEDPVCTADG-SVFELMSITPYIRKYGKHPVTGTPLKLEDLIPLTFHKNAEGEYH 102 (597)
Q Consensus 32 ~~~~~lp-f~~C~LSl~pl~~PV~t~~G-~ly~ke~Il~~L~k~~~~Pvtg~~l~lkdLi~l~f~kn~~~~~~ 102 (597)
..+..+| .+.|+||+++|++||+++.| |+||+.+|..||..+.++|+++++|...+|+++..+++....|.
T Consensus 14 ~~~~~~p~~~~CpI~~~~m~dPV~~~cG~htf~r~cI~~~l~~~~~cP~~~~~l~~~~L~pn~~Lk~~I~~~~ 86 (98)
T 1wgm_A 14 ETYADACDEFLDPIMSTLMCDPVVLPSSRVTVDRSTIARHLLSDQTDPFNRSPLTMDQIRPNTELKEKIQRWL 86 (98)
T ss_dssp CCCCSCCTTTBCTTTCSBCSSEEECTTTCCEEEHHHHHHHTTTSCBCTTTCSBCCTTTSEECHHHHHHHHHHH
T ss_pred hhhhcCcHhcCCcCccccccCCeECCCCCeEECHHHHHHHHHhCCCCCCCCCCCChhhceEcHHHHHHHHHHH
Confidence 3445566 78899999999999999999 99999999999999899999999999999999999988766664
No 40
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=99.08 E-value=1.1e-10 Score=104.97 Aligned_cols=115 Identities=15% Similarity=0.319 Sum_probs=98.5
Q ss_pred CccccCCCCCCCCc-------eecCCCCeeeHHhHHHHHHhcCCCCCCCCCCCCCCccccccccccCccccccccccccc
Q 007574 39 FYCCALTFTPFEDP-------VCTADGSVFELMSITPYIRKYGKHPVTGTPLKLEDLIPLTFHKNAEGEYHCPVLNKVFT 111 (597)
Q Consensus 39 f~~C~LSl~pl~~P-------V~t~~G~ly~ke~Il~~L~k~~~~Pvtg~~l~lkdLi~l~f~kn~~~~~~CPvt~k~ft 111 (597)
-..|+|+++.|.+| |+.+-||+|.+.+|.+||......|+-++++...++.++.+. .....|||+...|.
T Consensus 7 ~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~l~~l~i~---~~~~~C~iC~~~~~ 83 (133)
T 4ap4_A 7 TVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINHKRYHPIYIG---SGTVSCPICMDGYS 83 (133)
T ss_dssp SCBCTTTCCBHHHHHHTTCCEEEETTCCEEEHHHHHHHHTTCSBCTTTCCBCTTTCEEECBCS---SSSCBCTTTCCBHH
T ss_pred CCCCcccChhhhCccccccCeEecCCCChhhHHHHHHHHHhCCCCCCCCCcCccccccccccC---CCCCCCCCCCCccc
Confidence 35699999999999 888899999999999999998899999999999999886553 45688999999987
Q ss_pred Cc---eeEEEEecCcceehHHHHHHHhhcccCccccCCCCCCCCCCeeEe
Q 007574 112 EF---THIVAVKTTGNVFCFEAIKELNIKTKNWKELLTDEPFTKEDLITI 158 (597)
Q Consensus 112 ~~---t~~v~ik~~G~V~s~eai~~l~~k~k~~~~lv~~~~f~~~DII~L 158 (597)
+. .+.+.+-+|||+|...|+++..... ..||+|..++..+|+++|
T Consensus 84 ~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~--~~CP~Cr~~~~~~~~~~~ 131 (133)
T 4ap4_A 84 EIVQNGRLIVSTECGHVFCSQCLRDSLKNA--NTCPTCRKKINHKRYHPI 131 (133)
T ss_dssp HHHHTTCCEEEETTSBEEEHHHHHHHHHHC--SBCTTTCCBCCGGGEEEE
T ss_pred cccccCcceEeCCCCChhhHHHHHHHHHcC--CCCCCCCCcCChhcceee
Confidence 63 3455678999999999999875443 489999999999999876
No 41
>2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain EL factor, phosphoprotein, UBL conjugation pathway; NMR {Homo sapiens} PDB: 3l1x_A 3l1z_B
Probab=99.07 E-value=5.4e-11 Score=103.94 Aligned_cols=69 Identities=19% Similarity=0.209 Sum_probs=62.3
Q ss_pred CCCCC-CccccCCCCCCCCceecCCCCeeeHHhHHHHHHhcCCCCCCCCCCCCCCccccccccccCcccc
Q 007574 34 FKRLP-FYCCALTFTPFEDPVCTADGSVFELMSITPYIRKYGKHPVTGTPLKLEDLIPLTFHKNAEGEYH 102 (597)
Q Consensus 34 ~~~lp-f~~C~LSl~pl~~PV~t~~G~ly~ke~Il~~L~k~~~~Pvtg~~l~lkdLi~l~f~kn~~~~~~ 102 (597)
+..+| .+.||||+++|.+||+++.||+||+.+|..||..+.++|+++++|+..+|+++...++....|.
T Consensus 23 ~~~~p~~~~CpI~~~~m~dPV~~~cGhtf~r~~I~~~l~~~~~cP~~~~~l~~~~L~pn~~Lk~~I~~~~ 92 (100)
T 2kre_A 23 YSDAPDEFRDPLMDTLMTDPVRLPSGTIMDRSIILRHLLNSPTDPFNRQTLTESMLEPVPELKEQIQAWM 92 (100)
T ss_dssp CSSCSTTTBCTTTCSBCSSEEEETTTEEEEHHHHHHHTTSCSBCSSSCCBCCTTSSEECHHHHHHHHHHH
T ss_pred hccCcHhhCCcCccCcccCCeECCCCCEEchHHHHHHHHcCCCCCCCCCCCChhhceECHHHHHHHHHHH
Confidence 34455 8899999999999999999999999999999998889999999999999999999888766664
No 42
>2f42_A STIP1 homology and U-box containing protein 1; chaperone; 2.50A {Danio rerio} PDB: 2c2v_S 2oxq_C
Probab=98.93 E-value=2.8e-10 Score=109.38 Aligned_cols=66 Identities=24% Similarity=0.480 Sum_probs=60.1
Q ss_pred CCCccccCCCCCCCCceecCCCCeeeHHhHHHHHHhcC-CCCCCCCCCCCCCccccccccccCcccc
Q 007574 37 LPFYCCALTFTPFEDPVCTADGSVFELMSITPYIRKYG-KHPVTGTPLKLEDLIPLTFHKNAEGEYH 102 (597)
Q Consensus 37 lpf~~C~LSl~pl~~PV~t~~G~ly~ke~Il~~L~k~~-~~Pvtg~~l~lkdLi~l~f~kn~~~~~~ 102 (597)
.+.++||||+.+|.+||+++.||+||+.+|..||..++ ++|+||++|+..+|+|+...++....|+
T Consensus 104 p~~f~CPI~~elm~DPV~~~~Ghtfer~~I~~~l~~~~~tcP~t~~~l~~~~L~pN~~Lk~~Ie~~~ 170 (179)
T 2f42_A 104 PDYLCGKISFELMREPCITPSGITYDRKDIEEHLQRVGHFDPVTRSPLTQDQLIPNLAMKEVIDAFI 170 (179)
T ss_dssp CGGGBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHHTCSBCTTTCCBCCGGGCEECHHHHHHHHHHH
T ss_pred cHhhcccCccccCCCCeECCCCCEECHHHHHHHHHhCCCCCCCCcCCCChhhCcchHHHHHHHHHHH
Confidence 45889999999999999999999999999999999865 4999999999999999999988776664
No 43
>2yu4_A E3 SUMO-protein ligase NSE2; SP-ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.78 E-value=1.6e-09 Score=93.31 Aligned_cols=64 Identities=22% Similarity=0.287 Sum_probs=54.6
Q ss_pred CCccccCCCCCCCCceecC-CCCeeeHHhHHHHHHhc------CCCCCCCCC---CCCCCccccccccccCccc
Q 007574 38 PFYCCALTFTPFEDPVCTA-DGSVFELMSITPYIRKY------GKHPVTGTP---LKLEDLIPLTFHKNAEGEY 101 (597)
Q Consensus 38 pf~~C~LSl~pl~~PV~t~-~G~ly~ke~Il~~L~k~------~~~Pvtg~~---l~lkdLi~l~f~kn~~~~~ 101 (597)
....||||+++|.+||+++ .||+||+.+|..||..+ .++|+||.+ |...+|+++..+++....|
T Consensus 6 ~~~~CPI~~~~~~dPV~~~~cGh~f~r~cI~~~l~~~~~~~~~~~CP~tgc~~~~l~~~~L~pn~~L~~~I~~~ 79 (94)
T 2yu4_A 6 SGFTCPITKEEMKKPVKNKVCGHTYEEDAIVRMIESRQKRKKKAYCPQIGCSHTDIRKSDLIQDEALRRAIENH 79 (94)
T ss_dssp SCCBCTTTCSBCSSEEEESSSCCEEEHHHHHHHHHHHHTTTCCBCCCSTTCCCCCBCGGGEEECHHHHHHHHHH
T ss_pred cEeECcCcCchhcCCEEcCCCCCeecHHHHHHHHHHccCcCCCCCCCcCcCcccccCHhhCcCCHHHHHHHHHH
Confidence 4567999999999999996 89999999999999876 279998877 8899999988877655444
No 44
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.67 E-value=8.3e-09 Score=103.90 Aligned_cols=66 Identities=26% Similarity=0.508 Sum_probs=59.4
Q ss_pred CCCccccCCCCCCCCceecCCCCeeeHHhHHHHHHhcCC-CCCCCCCCCCCCccccccccccCcccc
Q 007574 37 LPFYCCALTFTPFEDPVCTADGSVFELMSITPYIRKYGK-HPVTGTPLKLEDLIPLTFHKNAEGEYH 102 (597)
Q Consensus 37 lpf~~C~LSl~pl~~PV~t~~G~ly~ke~Il~~L~k~~~-~Pvtg~~l~lkdLi~l~f~kn~~~~~~ 102 (597)
.++.+|+||+++|.+||+++.||+||+.+|..||...+. +|+++++++..+|+++...++....|+
T Consensus 206 ~~~~~c~i~~~~~~dPv~~~~gh~f~~~~i~~~~~~~~~~cP~~~~~~~~~~l~~n~~l~~~i~~~~ 272 (281)
T 2c2l_A 206 PDYLCGKISFELMREPCITPSGITYDRKDIEEHLQRVGHFNPVTRSPLTQEQLIPNLAMKEVIDAFI 272 (281)
T ss_dssp CSTTBCTTTCSBCSSEEECSSCCEEETTHHHHHHHHTCSSCTTTCCCCCGGGCEECHHHHHHHHHHH
T ss_pred CcccCCcCcCCHhcCCeECCCCCEECHHHHHHHHHHCCCCCcCCCCCCchhcCcccHHHHHHHHHHH
Confidence 458899999999999999999999999999999987655 999999999999999998887666654
No 45
>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2
Probab=98.40 E-value=2.1e-07 Score=76.48 Aligned_cols=64 Identities=20% Similarity=0.385 Sum_probs=55.9
Q ss_pred CCccccCCCCCCCCceecCCCCeeeHHhHHHHHHh-cCCCCCCCCCCCCCCccccccccccCccc
Q 007574 38 PFYCCALTFTPFEDPVCTADGSVFELMSITPYIRK-YGKHPVTGTPLKLEDLIPLTFHKNAEGEY 101 (597)
Q Consensus 38 pf~~C~LSl~pl~~PV~t~~G~ly~ke~Il~~L~k-~~~~Pvtg~~l~lkdLi~l~f~kn~~~~~ 101 (597)
....|+|++++|.+||+++-||+|++.+|..||.. ...+|+.+.++...+|+++...++....|
T Consensus 7 ~~~~C~IC~~~~~~Pv~~~CgH~fc~~Ci~~~~~~~~~~CP~C~~~~~~~~l~~n~~l~~~i~~~ 71 (78)
T 1t1h_A 7 EYFRCPISLELMKDPVIVSTGQTYERSSIQKWLDAGHKTCPKSQETLLHAGLTPNYVLKSLIALW 71 (78)
T ss_dssp SSSSCTTTSCCCSSEEEETTTEEEEHHHHHHHHTTTCCBCTTTCCBCSSCCCEECTTTHHHHHHH
T ss_pred ccCCCCCccccccCCEEcCCCCeecHHHHHHHHHHCcCCCCCCcCCCChhhCccCHHHHHHHHHH
Confidence 46789999999999999999999999999999987 67799999999999999888776654443
No 46
>3m62_A Ubiquitin conjugation factor E4; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae} PDB: 3m63_A* 2qiz_A 2qj0_A
Probab=98.37 E-value=8.8e-08 Score=111.37 Aligned_cols=67 Identities=21% Similarity=0.236 Sum_probs=62.4
Q ss_pred CCCccccCCCCCCCCceecCCC-CeeeHHhHHHHHHhcCCCCCCCCCCCCCCccccccccccCccccc
Q 007574 37 LPFYCCALTFTPFEDPVCTADG-SVFELMSITPYIRKYGKHPVTGTPLKLEDLIPLTFHKNAEGEYHC 103 (597)
Q Consensus 37 lpf~~C~LSl~pl~~PV~t~~G-~ly~ke~Il~~L~k~~~~Pvtg~~l~lkdLi~l~f~kn~~~~~~C 103 (597)
.++++||||++.|.|||+.++| ++||+.+|..||..+.+||+|++||+..+|+|++-.|..+.+|+-
T Consensus 889 P~~F~cPIs~~lM~DPVilpsG~~TydR~~I~~wl~~~~tdP~Tr~~L~~~~liPN~~Lk~~I~~w~~ 956 (968)
T 3m62_A 889 PDEFLDPLMYTIMKDPVILPASKMNIDRSTIKAHLLSDSTDPFNRMPLKLEDVTPNEELRQKILCFKK 956 (968)
T ss_dssp CGGGBCTTTCSBCSSEEECTTTCCEEEHHHHHHHHTTCCBCTTTCCBCCGGGCEECHHHHHHHHHHHH
T ss_pred cHHhCCcchhhHHhCCeEcCCCCEEECHHHHHHHHhcCCCCCCCCCCCCcccccccHHHHHHHHHHHH
Confidence 4588999999999999999997 799999999999999999999999999999999999988888863
No 47
>2bay_A PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin ligase, E3 ligase; 1.50A {Saccharomyces cerevisiae} SCOP: g.44.1.2 PDB: 1n87_A
Probab=98.13 E-value=1.7e-06 Score=68.69 Aligned_cols=56 Identities=20% Similarity=0.303 Sum_probs=47.2
Q ss_pred ccccccccccccCceeEEEEecCcceehHHHHHHHhhcccCccccCCCCCCCCCCeeEecC
Q 007574 100 EYHCPVLNKVFTEFTHIVAVKTTGNVFCFEAIKELNIKTKNWKELLTDEPFTKEDLITIQN 160 (597)
Q Consensus 100 ~~~CPvt~k~ft~~t~~v~ik~~G~V~s~eai~~l~~k~k~~~~lv~~~~f~~~DII~Lqd 160 (597)
.|+||+|+..|.+- |...+||+||..++|++..... ..||+|+++++.+|+|+++-
T Consensus 3 ~~~CpIs~~~m~dP---V~~~~sG~~yer~~I~~~l~~~--~~cP~t~~~L~~~~Lip~~~ 58 (61)
T 2bay_A 3 HMLCAISGKVPRRP---VLSPKSRTIFEKSLLEQYVKDT--GNDPITNEPLSIEEIVEIVP 58 (61)
T ss_dssp -CCCTTTCSCCSSE---EEETTTTEEEEHHHHHHHHHHH--SBCTTTCCBCCGGGCEECCC
T ss_pred eEEecCCCCCCCCC---EEeCCCCcEEcHHHHHHHHHhC--CCCcCCcCCCChhhcEECcc
Confidence 58999999999975 5444899999999999986543 46999999999999999863
No 48
>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=97.93 E-value=7.4e-06 Score=64.83 Aligned_cols=59 Identities=14% Similarity=0.250 Sum_probs=49.6
Q ss_pred cccccccccc-cccCceeEEEEecCcceehHHHHHHHhhcccCccccCCCCCCCCCCeeEe
Q 007574 99 GEYHCPVLNK-VFTEFTHIVAVKTTGNVFCFEAIKELNIKTKNWKELLTDEPFTKEDLITI 158 (597)
Q Consensus 99 ~~~~CPvt~k-~ft~~t~~v~ik~~G~V~s~eai~~l~~k~k~~~~lv~~~~f~~~DII~L 158 (597)
+++.|||+.. .|.+....+++.+|||+|+.+||+++... ....||+|..++++.|++..
T Consensus 2 ~~~~C~IC~~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~~~-~~~~CP~Cr~~~~~~~~~~~ 61 (65)
T 1g25_A 2 DDQGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVR-GAGNCPECGTPLRKSNFRVQ 61 (65)
T ss_dssp CTTCCSTTTTHHHHCSSCCEEECTTCCCEEHHHHHHHHHT-TSSSCTTTCCCCSSCCCEEE
T ss_pred CCCcCCcCCCCccCCCccCeecCCCCCHhHHHHHHHHHHc-CCCcCCCCCCccccccceee
Confidence 4688999999 88887766677899999999999998433 34689999999999999864
No 49
>3htk_C E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=97.81 E-value=2.7e-06 Score=85.90 Aligned_cols=56 Identities=21% Similarity=0.457 Sum_probs=41.8
Q ss_pred CCccccCCCCCCCCceec-CCCCeeeHHhHHHHHHhcC--CCCCCC--CCCCCCCcccccc
Q 007574 38 PFYCCALTFTPFEDPVCT-ADGSVFELMSITPYIRKYG--KHPVTG--TPLKLEDLIPLTF 93 (597)
Q Consensus 38 pf~~C~LSl~pl~~PV~t-~~G~ly~ke~Il~~L~k~~--~~Pvtg--~~l~lkdLi~l~f 93 (597)
....||||+.+|.+||.+ ..||+||+.+|+.|+...+ .+|++| +++...+|++...
T Consensus 180 ~el~CPIcl~~f~DPVts~~CGHsFcR~cI~~~~~~~~~~~CPvtGCr~~l~~~dL~pN~~ 240 (267)
T 3htk_C 180 IELTCPITCKPYEAPLISRKCNHVFDRDGIQNYLQGYTTRDCPQAACSQVVSMRDFVRDPI 240 (267)
T ss_dssp CCSBCTTTSSBCSSEEEESSSCCEEEHHHHHHHSTTCSCEECSGGGCSCEECGGGEEECHH
T ss_pred eeeECcCccCcccCCeeeCCCCCcccHHHHHHHHHhCCCCCCCcccccCcCchhhCCcCHH
Confidence 355799999999999985 7899999999999997542 355533 5555555555444
No 50
>2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain EL factor, phosphoprotein, UBL conjugation pathway; NMR {Homo sapiens} PDB: 3l1x_A 3l1z_B
Probab=97.51 E-value=9.8e-05 Score=64.10 Aligned_cols=54 Identities=15% Similarity=0.226 Sum_probs=45.6
Q ss_pred CcccccccccccccCceeEEEEecCcceehHHHHHHHhhcccCccccCCCCCCCCCCeeE
Q 007574 98 EGEYHCPVLNKVFTEFTHIVAVKTTGNVFCFEAIKELNIKTKNWKELLTDEPFTKEDLIT 157 (597)
Q Consensus 98 ~~~~~CPvt~k~ft~~t~~v~ik~~G~V~s~eai~~l~~k~k~~~~lv~~~~f~~~DII~ 157 (597)
..+|.||||...|.+- | +-+|||+|+..||.+... .+..||+|+.+++..|+|+
T Consensus 27 p~~~~CpI~~~~m~dP---V-~~~cGhtf~r~~I~~~l~--~~~~cP~~~~~l~~~~L~p 80 (100)
T 2kre_A 27 PDEFRDPLMDTLMTDP---V-RLPSGTIMDRSIILRHLL--NSPTDPFNRQTLTESMLEP 80 (100)
T ss_dssp STTTBCTTTCSBCSSE---E-EETTTEEEEHHHHHHHTT--SCSBCSSSCCBCCTTSSEE
T ss_pred cHhhCCcCccCcccCC---e-ECCCCCEEchHHHHHHHH--cCCCCCCCCCCCChhhceE
Confidence 3579999999999986 3 346999999999999754 3568999999999988885
No 51
>1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme, KIAA0126, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.2
Probab=97.49 E-value=0.0001 Score=63.69 Aligned_cols=54 Identities=13% Similarity=0.219 Sum_probs=45.6
Q ss_pred CcccccccccccccCceeEEEEecCc-ceehHHHHHHHhhcccCccccCCCCCCCCCCeeE
Q 007574 98 EGEYHCPVLNKVFTEFTHIVAVKTTG-NVFCFEAIKELNIKTKNWKELLTDEPFTKEDLIT 157 (597)
Q Consensus 98 ~~~~~CPvt~k~ft~~t~~v~ik~~G-~V~s~eai~~l~~k~k~~~~lv~~~~f~~~DII~ 157 (597)
..+|+||||...|.+- | +-+|| |+|+..||.+.... +..||+|+++|+..|+|+
T Consensus 20 p~~~~CpI~~~~m~dP---V-~~~cG~htf~r~cI~~~l~~--~~~cP~~~~~l~~~~L~p 74 (98)
T 1wgm_A 20 CDEFLDPIMSTLMCDP---V-VLPSSRVTVDRSTIARHLLS--DQTDPFNRSPLTMDQIRP 74 (98)
T ss_dssp CTTTBCTTTCSBCSSE---E-ECTTTCCEEEHHHHHHHTTT--SCBCTTTCSBCCTTTSEE
T ss_pred cHhcCCcCccccccCC---e-ECCCCCeEECHHHHHHHHHh--CCCCCCCCCCCChhhceE
Confidence 4579999999999986 3 35799 99999999997543 468999999999988885
No 52
>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens}
Probab=97.48 E-value=8.3e-05 Score=57.92 Aligned_cols=58 Identities=14% Similarity=0.308 Sum_probs=48.0
Q ss_pred cccccccccccccCc---eeEEEEecCcceehHHHHHHHhhcccCccccCCCCCCCCCCeeEe
Q 007574 99 GEYHCPVLNKVFTEF---THIVAVKTTGNVFCFEAIKELNIKTKNWKELLTDEPFTKEDLITI 158 (597)
Q Consensus 99 ~~~~CPvt~k~ft~~---t~~v~ik~~G~V~s~eai~~l~~k~k~~~~lv~~~~f~~~DII~L 158 (597)
+.+.|||+...|.+. .+.+++.+|||+|+.+|+.+.... ...||+|..++...|++.|
T Consensus 2 ~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~--~~~CP~Cr~~~~~~~~~~~ 62 (64)
T 2xeu_A 2 AMVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKN--ANTCPTCRKKINHKRYHPI 62 (64)
T ss_dssp CCCBCTTTCCBHHHHHHTTCCEEEETTSCEEEHHHHHHHHHH--CSBCTTTCCBCTTTCEEEC
T ss_pred CCCCCCccChhhhCccccCCCEEeCCCCCchhHHHHHHHHHc--CCCCCCCCccCCccceeee
Confidence 467899999999763 355667899999999999987544 4589999999999999876
No 53
>2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase, UBL conjugation pathway; NMR {Mus musculus}
Probab=97.46 E-value=9.4e-05 Score=62.16 Aligned_cols=54 Identities=17% Similarity=0.213 Sum_probs=45.3
Q ss_pred CcccccccccccccCceeEEEEecCcceehHHHHHHHhhcccCccccCCCCCCCCCCeeE
Q 007574 98 EGEYHCPVLNKVFTEFTHIVAVKTTGNVFCFEAIKELNIKTKNWKELLTDEPFTKEDLIT 157 (597)
Q Consensus 98 ~~~~~CPvt~k~ft~~t~~v~ik~~G~V~s~eai~~l~~k~k~~~~lv~~~~f~~~DII~ 157 (597)
..+|.||||...|.+- | +-+|||+|+..||.+.... +..||+|+++|+..++|+
T Consensus 12 p~~~~CpI~~~~m~dP---V-~~~cGhtf~r~~I~~~l~~--~~~cP~~~~~l~~~~l~p 65 (85)
T 2kr4_A 12 PDEFRDPLMDTLMTDP---V-RLPSGTVMDRSIILRHLLN--SPTDPFNRQMLTESMLEP 65 (85)
T ss_dssp CTTTBCTTTCSBCSSE---E-ECTTSCEEEHHHHHHHHHH--CSBCTTTCCBCCGGGCEE
T ss_pred chheECcccCchhcCC---e-ECCCCCEECHHHHHHHHhc--CCCCCCCcCCCChHhcch
Confidence 3579999999999986 3 3569999999999997543 468999999999888875
No 54
>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=97.42 E-value=0.00042 Score=56.81 Aligned_cols=59 Identities=22% Similarity=0.313 Sum_probs=49.3
Q ss_pred CCccccCCCCCCCCceecCCCCeeeHHhHHHHHHh------cCCCCCCCCCCCCCCccccccccc
Q 007574 38 PFYCCALTFTPFEDPVCTADGSVFELMSITPYIRK------YGKHPVTGTPLKLEDLIPLTFHKN 96 (597)
Q Consensus 38 pf~~C~LSl~pl~~PV~t~~G~ly~ke~Il~~L~k------~~~~Pvtg~~l~lkdLi~l~f~kn 96 (597)
....|+|++..+.+||..+-||+|++.+|..|+.. ....|+-+.++...+|.++....+
T Consensus 18 ~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~~~~~~n~~l~~ 82 (85)
T 2ecw_A 18 EEVTCPICLELLKEPVSADCNHSFCRACITLNYESNRNTDGKGNCPVCRVPYPFGNLKPNLHVAN 82 (85)
T ss_dssp TTTSCTTTCSCCSSCEECTTSCCBCHHHHHHHHHHSBCTTSCBCCTTTCCCCCTTCCEECSCCCS
T ss_pred cCCCCcCCChhhCcceeCCCCCHHHHHHHHHHHHhccCCCCCCCCCCCCCcCCHHhCCcCHHHHH
Confidence 35679999999999999999999999999999988 445788888888777777665543
No 55
>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2
Probab=97.41 E-value=0.00016 Score=58.91 Aligned_cols=55 Identities=15% Similarity=0.207 Sum_probs=44.8
Q ss_pred CcccccccccccccCceeEEEEecCcceehHHHHHHHhhcccCccccCCCCCCCCCCeeE
Q 007574 98 EGEYHCPVLNKVFTEFTHIVAVKTTGNVFCFEAIKELNIKTKNWKELLTDEPFTKEDLIT 157 (597)
Q Consensus 98 ~~~~~CPvt~k~ft~~t~~v~ik~~G~V~s~eai~~l~~k~k~~~~lv~~~~f~~~DII~ 157 (597)
...+.|||+...|.+- |. -+|||+|+..||.+.... ....||+|..++...++++
T Consensus 6 ~~~~~C~IC~~~~~~P---v~-~~CgH~fc~~Ci~~~~~~-~~~~CP~C~~~~~~~~l~~ 60 (78)
T 1t1h_A 6 PEYFRCPISLELMKDP---VI-VSTGQTYERSSIQKWLDA-GHKTCPKSQETLLHAGLTP 60 (78)
T ss_dssp SSSSSCTTTSCCCSSE---EE-ETTTEEEEHHHHHHHHTT-TCCBCTTTCCBCSSCCCEE
T ss_pred cccCCCCCccccccCC---EE-cCCCCeecHHHHHHHHHH-CcCCCCCCcCCCChhhCcc
Confidence 4578999999999864 22 389999999999997542 3568999999999888775
No 56
>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.41 E-value=0.00037 Score=57.15 Aligned_cols=59 Identities=19% Similarity=0.268 Sum_probs=51.1
Q ss_pred CCccccCCCCCCCCceecCCCCeeeHHhHHHHHHh------cCCCCCCCCCCCCCCccccccccc
Q 007574 38 PFYCCALTFTPFEDPVCTADGSVFELMSITPYIRK------YGKHPVTGTPLKLEDLIPLTFHKN 96 (597)
Q Consensus 38 pf~~C~LSl~pl~~PV~t~~G~ly~ke~Il~~L~k------~~~~Pvtg~~l~lkdLi~l~f~kn 96 (597)
....|+|++..+.+|+..+-||+|++.+|..|+.. ....|+-+.++...+|.++....+
T Consensus 18 ~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~~~~~~n~~l~~ 82 (85)
T 2ecv_A 18 EEVTCPICLELLTQPLSLDCGHSFCQACLTANHKKSMLDKGESSCPVCRISYQPENIRPNRHVAN 82 (85)
T ss_dssp CCCCCTTTCSCCSSCBCCSSSCCBCTTHHHHHHHHHHHTTSCCCCTTTCCSSCSSSCCCSCCCCC
T ss_pred CCCCCCCCCcccCCceeCCCCCHHHHHHHHHHHHHhhcCCCCCcCCCCCCccCHHhcCccHHHHH
Confidence 35679999999999999999999999999999987 567899888888888887766554
No 57
>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.38 E-value=0.00026 Score=56.99 Aligned_cols=54 Identities=11% Similarity=0.084 Sum_probs=48.5
Q ss_pred CCccccCCCCCCCCceec-CCCCeeeHHhHHHHHHhcCCCCCCCCCCCCCCcccc
Q 007574 38 PFYCCALTFTPFEDPVCT-ADGSVFELMSITPYIRKYGKHPVTGTPLKLEDLIPL 91 (597)
Q Consensus 38 pf~~C~LSl~pl~~PV~t-~~G~ly~ke~Il~~L~k~~~~Pvtg~~l~lkdLi~l 91 (597)
....|+|++..+.+||.. +-||+|++.+|..||......|+-+.++...+++.+
T Consensus 14 ~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~~~~~~~ 68 (72)
T 2djb_A 14 PYILCSICKGYLIDATTITECLHTFCKSCIVRHFYYSNRCPKCNIVVHQTQPLSG 68 (72)
T ss_dssp GGGSCTTTSSCCSSCEECSSSCCEECHHHHHHHHHHCSSCTTTCCCCCSSCSCCC
T ss_pred CCCCCCCCChHHHCcCEECCCCCHHHHHHHHHHHHcCCcCCCcCcccCccccccc
Confidence 356799999999999985 889999999999999988889999999998888765
No 58
>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens}
Probab=97.37 E-value=0.00013 Score=63.00 Aligned_cols=56 Identities=14% Similarity=0.338 Sum_probs=46.8
Q ss_pred CccccCCCCCCCCcee-cCCCCeeeHHhHHHHHHhc-CCCCCCCCCCCCCCccccccc
Q 007574 39 FYCCALTFTPFEDPVC-TADGSVFELMSITPYIRKY-GKHPVTGTPLKLEDLIPLTFH 94 (597)
Q Consensus 39 f~~C~LSl~pl~~PV~-t~~G~ly~ke~Il~~L~k~-~~~Pvtg~~l~lkdLi~l~f~ 94 (597)
...|+|++..|.+||. .+-||+|++.+|..||... ...|+-+.++...+|+++.+.
T Consensus 22 ~~~C~IC~~~~~~p~~~~~CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~~~~l~~~~~~ 79 (100)
T 3lrq_A 22 VFRCFICMEKLRDARLCPHCSKLCCFSCIRRWLTEQRAQCPHCRAPLQLRELVNCRWA 79 (100)
T ss_dssp HTBCTTTCSBCSSEEECTTTCCEEEHHHHHHHHHHTCSBCTTTCCBCCGGGCEECTTH
T ss_pred CCCCccCCccccCccccCCCCChhhHHHHHHHHHHCcCCCCCCCCcCCHHHhHhhHHH
Confidence 4569999999999999 8889999999999999987 467777777777777766554
No 59
>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.35 E-value=0.00012 Score=60.76 Aligned_cols=61 Identities=15% Similarity=0.239 Sum_probs=47.5
Q ss_pred CcccccccccccccCceeEEEEecCcceehHHHHHHHhhcc-cCccccCCCCCCCCCCeeEe
Q 007574 98 EGEYHCPVLNKVFTEFTHIVAVKTTGNVFCFEAIKELNIKT-KNWKELLTDEPFTKEDLITI 158 (597)
Q Consensus 98 ~~~~~CPvt~k~ft~~t~~v~ik~~G~V~s~eai~~l~~k~-k~~~~lv~~~~f~~~DII~L 158 (597)
...+.|||+...|.+..+...+-+|||+|+.+||.++.... ....||+|..++...||..|
T Consensus 13 ~~~~~C~IC~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~~i~~l 74 (88)
T 2ct2_A 13 REVLECPICMESFTEEQLRPKLLHCGHTICRQCLEKLLASSINGVRCPFCSKITRITSLTQL 74 (88)
T ss_dssp CSCCBCTTTCCBCCTTSSCEEECSSSCEEEHHHHHHHHHHCSSCBCCTTTCCCBCCSSTTTS
T ss_pred cCCCCCccCCccccccCCCeEECCCCChhhHHHHHHHHHcCCCCcCCCCCCCcccchhHHHH
Confidence 45688999999999866544456999999999999975432 24689999999988766433
No 60
>3htk_C E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=97.35 E-value=0.00024 Score=71.71 Aligned_cols=91 Identities=14% Similarity=0.227 Sum_probs=67.1
Q ss_pred eeeHHhHHHHHHhcCCCCCCCCCC--CCCCccccccccccCcccccccccccccCceeEEEEecCcceehHHHHHHHhhc
Q 007574 60 VFELMSITPYIRKYGKHPVTGTPL--KLEDLIPLTFHKNAEGEYHCPVLNKVFTEFTHIVAVKTTGNVFCFEAIKELNIK 137 (597)
Q Consensus 60 ly~ke~Il~~L~k~~~~Pvtg~~l--~lkdLi~l~f~kn~~~~~~CPvt~k~ft~~t~~v~ik~~G~V~s~eai~~l~~k 137 (597)
+|..-..+.|+..+...|+-+... .=.||+- .....++.||||...|.+- |.+..|||+|+..||.++...
T Consensus 143 ~~~~lk~~~~i~~~P~~~lPd~~~~~dDDDI~v----~~~~~el~CPIcl~~f~DP---Vts~~CGHsFcR~cI~~~~~~ 215 (267)
T 3htk_C 143 TLKILKVLPYIWNDPTCVIPDLQNPADEDDLQI----EGGKIELTCPITCKPYEAP---LISRKCNHVFDRDGIQNYLQG 215 (267)
T ss_dssp HHHHHHHHHHHHHCTTBCCCCCSSTTCSSCCCC----CSSBCCSBCTTTSSBCSSE---EEESSSCCEEEHHHHHHHSTT
T ss_pred HHHHHHHccccccCCCCCCCCCCCCCCCcccee----cCCceeeECcCccCcccCC---eeeCCCCCcccHHHHHHHHHh
Confidence 667777788888877776644221 2233321 2235679999999999877 445789999999999998654
Q ss_pred ccCccccC--CCCCCCCCCeeE
Q 007574 138 TKNWKELL--TDEPFTKEDLIT 157 (597)
Q Consensus 138 ~k~~~~lv--~~~~f~~~DII~ 157 (597)
...+.||+ |.+++...|+++
T Consensus 216 ~~~~~CPvtGCr~~l~~~dL~p 237 (267)
T 3htk_C 216 YTTRDCPQAACSQVVSMRDFVR 237 (267)
T ss_dssp CSCEECSGGGCSCEECGGGEEE
T ss_pred CCCCCCCcccccCcCchhhCCc
Confidence 45689999 999999888875
No 61
>2yu4_A E3 SUMO-protein ligase NSE2; SP-ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.34 E-value=0.0002 Score=61.20 Aligned_cols=57 Identities=21% Similarity=0.282 Sum_probs=44.3
Q ss_pred CcccccccccccccCceeEEEEecCcceehHHHHHHHhhcc----cCccccC--CCCC-CCCCCeeE
Q 007574 98 EGEYHCPVLNKVFTEFTHIVAVKTTGNVFCFEAIKELNIKT----KNWKELL--TDEP-FTKEDLIT 157 (597)
Q Consensus 98 ~~~~~CPvt~k~ft~~t~~v~ik~~G~V~s~eai~~l~~k~----k~~~~lv--~~~~-f~~~DII~ 157 (597)
..+|.||||...|.+- |.+..|||+|+..||.++.... ....||+ |... ++..|+++
T Consensus 5 ~~~~~CPI~~~~~~dP---V~~~~cGh~f~r~cI~~~l~~~~~~~~~~~CP~tgc~~~~l~~~~L~p 68 (94)
T 2yu4_A 5 SSGFTCPITKEEMKKP---VKNKVCGHTYEEDAIVRMIESRQKRKKKAYCPQIGCSHTDIRKSDLIQ 68 (94)
T ss_dssp SSCCBCTTTCSBCSSE---EEESSSCCEEEHHHHHHHHHHHHTTTCCBCCCSTTCCCCCBCGGGEEE
T ss_pred CcEeECcCcCchhcCC---EEcCCCCCeecHHHHHHHHHHccCcCCCCCCCcCcCcccccCHhhCcC
Confidence 4579999999999975 4455699999999999975432 2468999 5555 88888874
No 62
>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus}
Probab=97.33 E-value=0.00011 Score=58.68 Aligned_cols=60 Identities=15% Similarity=0.350 Sum_probs=49.1
Q ss_pred cCcccccccccccccCc---eeEEEEecCcceehHHHHHHHhhcccCccccCCCCCCCCCCeeEe
Q 007574 97 AEGEYHCPVLNKVFTEF---THIVAVKTTGNVFCFEAIKELNIKTKNWKELLTDEPFTKEDLITI 158 (597)
Q Consensus 97 ~~~~~~CPvt~k~ft~~---t~~v~ik~~G~V~s~eai~~l~~k~k~~~~lv~~~~f~~~DII~L 158 (597)
..+.+.|||+...|.+. ...+++.+|||+|+.+||.+..... ..||+|..++...|++.|
T Consensus 7 ~~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~--~~CP~Cr~~~~~~~~~~~ 69 (71)
T 3ng2_A 7 PSGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNA--NTCPTCRKKINHKRYHPI 69 (71)
T ss_dssp CTTCCBCTTTCCBHHHHHTTTCCEEECTTSCEEEHHHHHHHHHHC--SBCTTTCCBCCCCSCCCC
T ss_pred CCCCCCCcccChhhhccccccCCeEeCCCCChHhHHHHHHHHHcC--CCCCCCCCccChhheeec
Confidence 35678999999999763 3566788999999999999875433 489999999999988764
No 63
>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens}
Probab=97.33 E-value=0.00017 Score=60.69 Aligned_cols=46 Identities=13% Similarity=0.082 Sum_probs=37.3
Q ss_pred CCccccCCCCCCCCceecC-CCCeeeHHhHHHHHHhcC--CCCCCCCCC
Q 007574 38 PFYCCALTFTPFEDPVCTA-DGSVFELMSITPYIRKYG--KHPVTGTPL 83 (597)
Q Consensus 38 pf~~C~LSl~pl~~PV~t~-~G~ly~ke~Il~~L~k~~--~~Pvtg~~l 83 (597)
....|+|+++.|.+||..+ -||+|++.+|..|+...+ ..|+.+.++
T Consensus 12 ~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~ 60 (92)
T 3ztg_A 12 DELLCLICKDIMTDAVVIPCCGNSYCDECIRTALLESDEHTCPTCHQND 60 (92)
T ss_dssp TTTEETTTTEECSSCEECTTTCCEECHHHHHHHHHHCTTCCCTTTCCSS
T ss_pred cCCCCCCCChhhcCceECCCCCCHHHHHHHHHHHHhcCCCcCcCCCCcC
Confidence 4668999999999999999 699999999999998543 345555443
No 64
>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}
Probab=97.32 E-value=8.7e-05 Score=69.81 Aligned_cols=67 Identities=30% Similarity=0.417 Sum_probs=57.2
Q ss_pred CCccccCCCCCCCCceecCCCCeeeHHhHHHHHHhcC-CCCCCCCCCCCCCccccccccccC--cccccc
Q 007574 38 PFYCCALTFTPFEDPVCTADGSVFELMSITPYIRKYG-KHPVTGTPLKLEDLIPLTFHKNAE--GEYHCP 104 (597)
Q Consensus 38 pf~~C~LSl~pl~~PV~t~~G~ly~ke~Il~~L~k~~-~~Pvtg~~l~lkdLi~l~f~kn~~--~~~~CP 104 (597)
....|+|++.+|.+||.++-||+|++.+|..||.... ..|+-+.++...+|++.++..+.. -...||
T Consensus 17 ~~~~C~IC~~~~~~pv~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~~~~~~~i~~l~v~C~ 86 (170)
T 3hcs_A 17 SKYECPICLMALREAVQTPCGHRFCKACIIKSIRDAGHKCPVDNEILLENQLFPDNFAKREILSLMVKCP 86 (170)
T ss_dssp GGGBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHHHCSBCTTTCCBCCGGGCEECHHHHHHHHTSEEECC
T ss_pred CCCCCCCCChhhcCcEECCCCCHHHHHHHHHHHHhCCCCCCCCccCcchhhhhhhHHHHHHHhhcccCCC
Confidence 3567999999999999999999999999999998765 799999999999998888766543 345687
No 65
>2f42_A STIP1 homology and U-box containing protein 1; chaperone; 2.50A {Danio rerio} PDB: 2c2v_S 2oxq_C
Probab=97.32 E-value=0.00014 Score=69.67 Aligned_cols=55 Identities=16% Similarity=0.212 Sum_probs=45.1
Q ss_pred CcccccccccccccCceeEEEEecCcceehHHHHHHHhhcccCccccCCCCCCCCCCeeE
Q 007574 98 EGEYHCPVLNKVFTEFTHIVAVKTTGNVFCFEAIKELNIKTKNWKELLTDEPFTKEDLIT 157 (597)
Q Consensus 98 ~~~~~CPvt~k~ft~~t~~v~ik~~G~V~s~eai~~l~~k~k~~~~lv~~~~f~~~DII~ 157 (597)
...|+||||...|.+- | +-+|||+|+..||.+.-..... .||+|+.+|+..|+|+
T Consensus 104 p~~f~CPI~~elm~DP---V-~~~~Ghtfer~~I~~~l~~~~~-tcP~t~~~l~~~~L~p 158 (179)
T 2f42_A 104 PDYLCGKISFELMREP---C-ITPSGITYDRKDIEEHLQRVGH-FDPVTRSPLTQDQLIP 158 (179)
T ss_dssp CGGGBCTTTCSBCSSE---E-ECTTSCEEEHHHHHHHHHHTCS-BCTTTCCBCCGGGCEE
T ss_pred cHhhcccCccccCCCC---e-ECCCCCEECHHHHHHHHHhCCC-CCCCCcCCCChhhCcc
Confidence 4679999999999975 3 3389999999999997544222 5999999999988886
No 66
>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A
Probab=97.30 E-value=0.00012 Score=65.02 Aligned_cols=66 Identities=30% Similarity=0.422 Sum_probs=52.9
Q ss_pred CccccCCCCCCCCceecCCCCeeeHHhHHHHHHhcC-CCCCCCCCCCCCCccccccccccCc--ccccc
Q 007574 39 FYCCALTFTPFEDPVCTADGSVFELMSITPYIRKYG-KHPVTGTPLKLEDLIPLTFHKNAEG--EYHCP 104 (597)
Q Consensus 39 f~~C~LSl~pl~~PV~t~~G~ly~ke~Il~~L~k~~-~~Pvtg~~l~lkdLi~l~f~kn~~~--~~~CP 104 (597)
...|+|++.++.+||.++-||+|++.+|..||.... ..|+-+.++...+|++..+..+... ...||
T Consensus 18 ~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~~~l~~~i~~l~v~C~ 86 (118)
T 3hct_A 18 KYECPICLMALREAVQTPCGHRFCKACIIKSIRDAGHKCPVDNEILLENQLFPDNFAKREILSLMVKCP 86 (118)
T ss_dssp GGBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHHHCSBCTTTCCBCCGGGCEECHHHHHHHHTSEEECS
T ss_pred CCCCCcCChhhcCeEECCcCChhhHHHHHHHHhhCCCCCCCCCCCcCHHhcccCHHHHHHHccceeECC
Confidence 567999999999999999999999999999998775 6788877777777777666554333 34466
No 67
>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus}
Probab=97.28 E-value=0.0002 Score=57.08 Aligned_cols=56 Identities=14% Similarity=0.282 Sum_probs=49.9
Q ss_pred CCccccCCCCCCCCc-------eecCCCCeeeHHhHHHHHHhcCCCCCCCCCCCCCCcccccc
Q 007574 38 PFYCCALTFTPFEDP-------VCTADGSVFELMSITPYIRKYGKHPVTGTPLKLEDLIPLTF 93 (597)
Q Consensus 38 pf~~C~LSl~pl~~P-------V~t~~G~ly~ke~Il~~L~k~~~~Pvtg~~l~lkdLi~l~f 93 (597)
.-..|+|+++++.+| ++.+-||+|...+|..||......|+-+.++..+++.++.+
T Consensus 9 ~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~~~~~~l 71 (71)
T 3ng2_A 9 GTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINHKRYHPIYI 71 (71)
T ss_dssp TCCBCTTTCCBHHHHHTTTCCEEECTTSCEEEHHHHHHHHHHCSBCTTTCCBCCCCSCCCCCC
T ss_pred CCCCCcccChhhhccccccCCeEeCCCCChHhHHHHHHHHHcCCCCCCCCCccChhheeeccC
Confidence 345799999999998 77888999999999999999889999999999999987743
No 68
>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=97.27 E-value=0.0004 Score=56.90 Aligned_cols=61 Identities=15% Similarity=0.179 Sum_probs=48.3
Q ss_pred CcccccccccccccCceeEEEEecCcceehHHHHHHHhhcc----cCccccCCCCCCCCCCeeEecCCC
Q 007574 98 EGEYHCPVLNKVFTEFTHIVAVKTTGNVFCFEAIKELNIKT----KNWKELLTDEPFTKEDLITIQNPN 162 (597)
Q Consensus 98 ~~~~~CPvt~k~ft~~t~~v~ik~~G~V~s~eai~~l~~k~----k~~~~lv~~~~f~~~DII~Lqdp~ 162 (597)
...+.|||+...|.+.. +-+|||+|+..|+.++.... ....||+|..++...++.......
T Consensus 17 ~~~~~C~IC~~~~~~p~----~~~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~~~~~~n~~l~ 81 (85)
T 2ecw_A 17 KEEVTCPICLELLKEPV----SADCNHSFCRACITLNYESNRNTDGKGNCPVCRVPYPFGNLKPNLHVA 81 (85)
T ss_dssp CTTTSCTTTCSCCSSCE----ECTTSCCBCHHHHHHHHHHSBCTTSCBCCTTTCCCCCTTCCEECSCCC
T ss_pred ccCCCCcCCChhhCcce----eCCCCCHHHHHHHHHHHHhccCCCCCCCCCCCCCcCCHHhCCcCHHHH
Confidence 45689999999998752 45899999999999875542 267899999999988887654433
No 69
>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.23 E-value=0.00022 Score=57.41 Aligned_cols=55 Identities=7% Similarity=0.073 Sum_probs=45.3
Q ss_pred CcccccccccccccCceeEEEEecCcceehHHHHHHHhhcccCccccCCCCCCCCCCeeE
Q 007574 98 EGEYHCPVLNKVFTEFTHIVAVKTTGNVFCFEAIKELNIKTKNWKELLTDEPFTKEDLIT 157 (597)
Q Consensus 98 ~~~~~CPvt~k~ft~~t~~v~ik~~G~V~s~eai~~l~~k~k~~~~lv~~~~f~~~DII~ 157 (597)
...+.|||+...|.+. |.+.+|||+|+.+||.+.... ...||+|..++...|++.
T Consensus 13 ~~~~~C~IC~~~~~~p---~~~~~CgH~fC~~Ci~~~~~~--~~~CP~Cr~~~~~~~~~~ 67 (72)
T 2djb_A 13 TPYILCSICKGYLIDA---TTITECLHTFCKSCIVRHFYY--SNRCPKCNIVVHQTQPLS 67 (72)
T ss_dssp CGGGSCTTTSSCCSSC---EECSSSCCEECHHHHHHHHHH--CSSCTTTCCCCCSSCSCC
T ss_pred CCCCCCCCCChHHHCc---CEECCCCCHHHHHHHHHHHHc--CCcCCCcCcccCcccccc
Confidence 4578999999999873 445799999999999987533 358999999999988774
No 70
>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens}
Probab=97.21 E-value=0.00017 Score=56.16 Aligned_cols=54 Identities=15% Similarity=0.316 Sum_probs=48.7
Q ss_pred ccccCCCCCCCCc-------eecCCCCeeeHHhHHHHHHhcCCCCCCCCCCCCCCcccccc
Q 007574 40 YCCALTFTPFEDP-------VCTADGSVFELMSITPYIRKYGKHPVTGTPLKLEDLIPLTF 93 (597)
Q Consensus 40 ~~C~LSl~pl~~P-------V~t~~G~ly~ke~Il~~L~k~~~~Pvtg~~l~lkdLi~l~f 93 (597)
..|+|+++.+.+| ++.+-||+|..++|..||......|+-+.++...+++++.|
T Consensus 4 ~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~~~~~~l 64 (64)
T 2xeu_A 4 VSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINHKRYHPIYI 64 (64)
T ss_dssp CBCTTTCCBHHHHHHTTCCEEEETTSCEEEHHHHHHHHHHCSBCTTTCCBCTTTCEEECCC
T ss_pred CCCCccChhhhCccccCCCEEeCCCCCchhHHHHHHHHHcCCCCCCCCccCCccceeeeeC
Confidence 4699999999987 77888999999999999999888999999999999988754
No 71
>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.21 E-value=0.00049 Score=55.13 Aligned_cols=56 Identities=20% Similarity=0.417 Sum_probs=44.0
Q ss_pred ccCcccccccccccccCceeEEEEecCcceehHHHHHHHhhc-ccCccccCCCCCCCCCCe
Q 007574 96 NAEGEYHCPVLNKVFTEFTHIVAVKTTGNVFCFEAIKELNIK-TKNWKELLTDEPFTKEDL 155 (597)
Q Consensus 96 n~~~~~~CPvt~k~ft~~t~~v~ik~~G~V~s~eai~~l~~k-~k~~~~lv~~~~f~~~DI 155 (597)
.-...+.|||+...|.+- |.+ +|||+|+.+||.++... .....||+|..++...||
T Consensus 16 ~~~~~~~C~IC~~~~~~~---~~~-~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~~~ 72 (73)
T 2ysl_A 16 KLQEEVICPICLDILQKP---VTI-DCGHNFCLKCITQIGETSCGFFKCPLCKTSVRKNAI 72 (73)
T ss_dssp CCCCCCBCTTTCSBCSSE---EEC-TTCCEEEHHHHHHHCSSSCSCCCCSSSCCCCCCCCC
T ss_pred hCccCCEeccCCcccCCe---EEc-CCCChhhHHHHHHHHHcCCCCCCCCCCCCcCCcccC
Confidence 335678999999999853 333 99999999999997532 245689999999988775
No 72
>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.20 E-value=0.00034 Score=55.26 Aligned_cols=55 Identities=20% Similarity=0.329 Sum_probs=44.4
Q ss_pred ccCcccccccccccccCceeEEEEecCcceehHHHHHHHhhcccCccccCCCCCCCCCCe
Q 007574 96 NAEGEYHCPVLNKVFTEFTHIVAVKTTGNVFCFEAIKELNIKTKNWKELLTDEPFTKEDL 155 (597)
Q Consensus 96 n~~~~~~CPvt~k~ft~~t~~v~ik~~G~V~s~eai~~l~~k~k~~~~lv~~~~f~~~DI 155 (597)
.....+.|||+...|.+... -+|||+|+.+||.+... .....||+|..+++.+||
T Consensus 11 ~~~~~~~C~IC~~~~~~p~~----~~CgH~fC~~Ci~~~~~-~~~~~CP~Cr~~~~~~~i 65 (66)
T 2ecy_A 11 TVEDKYKCEKCHLVLCSPKQ----TECGHRFCESCMAALLS-SSSPKCTACQESIVKDKV 65 (66)
T ss_dssp SCCCCEECTTTCCEESSCCC----CSSSCCCCHHHHHHHHT-TSSCCCTTTCCCCCTTTC
T ss_pred cCCcCCCCCCCChHhcCeeE----CCCCCHHHHHHHHHHHH-hCcCCCCCCCcCCChhhc
Confidence 33567999999999987533 48999999999999753 345689999999998876
No 73
>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=97.20 E-value=0.0003 Score=61.13 Aligned_cols=55 Identities=15% Similarity=0.265 Sum_probs=45.2
Q ss_pred CccccCCCCCCCCceecCCCCeeeHHhHHHHHHhcC---CCCCCCCCCCCCCcccccc
Q 007574 39 FYCCALTFTPFEDPVCTADGSVFELMSITPYIRKYG---KHPVTGTPLKLEDLIPLTF 93 (597)
Q Consensus 39 f~~C~LSl~pl~~PV~t~~G~ly~ke~Il~~L~k~~---~~Pvtg~~l~lkdLi~l~f 93 (597)
...|+|++..+.+||.++-||+|++.+|..|+.... ..|+-+.++...+|.++..
T Consensus 21 ~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~~~~~~~~ 78 (112)
T 1jm7_A 21 ILECPICLELIKEPVSTKCDHIFCKFCMLKLLNQKKGPSQCPLCKNDITKRSLQESTR 78 (112)
T ss_dssp HTSCSSSCCCCSSCCBCTTSCCCCSHHHHHHHHSSSSSCCCTTTSCCCCTTTCBCCCS
T ss_pred CCCCcccChhhcCeEECCCCCHHHHHHHHHHHHhCCCCCCCcCCCCcCCHhhcCccHH
Confidence 347999999999999999999999999999998653 5677777777766666544
No 74
>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens}
Probab=97.19 E-value=0.0003 Score=65.37 Aligned_cols=53 Identities=15% Similarity=0.070 Sum_probs=42.5
Q ss_pred CccccCCCCCCCCceecCCCCeeeHHhHHHHHHhcC-CCCCCCCCCCCC-Ccccc
Q 007574 39 FYCCALTFTPFEDPVCTADGSVFELMSITPYIRKYG-KHPVTGTPLKLE-DLIPL 91 (597)
Q Consensus 39 f~~C~LSl~pl~~PV~t~~G~ly~ke~Il~~L~k~~-~~Pvtg~~l~lk-dLi~l 91 (597)
...|+||+.+|.+||+++-||+|++.+|..||.... .+|+.+.++... +|.++
T Consensus 78 ~~~C~IC~~~~~~pv~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~l~~n 132 (150)
T 1z6u_A 78 SFMCVCCQELVYQPVTTECFHNVCKDCLQRSFKAQVFSCPACRHDLGQNYIMIPN 132 (150)
T ss_dssp HTBCTTTSSBCSSEEECTTSCEEEHHHHHHHHHTTCCBCTTTCCBCCTTCCCCBC
T ss_pred CCEeecCChhhcCCEEcCCCCchhHHHHHHHHHhCCCcCCCCCccCCCCCCCCCC
Confidence 467999999999999999999999999999998643 466666666665 44433
No 75
>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens}
Probab=97.18 E-value=0.00023 Score=60.94 Aligned_cols=55 Identities=13% Similarity=0.201 Sum_probs=42.4
Q ss_pred CccccCCCCCCCCceec-CCCCeeeHHhHHHHHHhcCCCCCCCCCCCCCCcccccc
Q 007574 39 FYCCALTFTPFEDPVCT-ADGSVFELMSITPYIRKYGKHPVTGTPLKLEDLIPLTF 93 (597)
Q Consensus 39 f~~C~LSl~pl~~PV~t-~~G~ly~ke~Il~~L~k~~~~Pvtg~~l~lkdLi~l~f 93 (597)
...|+|++..+.+||.. +-||+|++.+|..|+......|+-+.++...+|.++..
T Consensus 22 ~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~~~l~~n~~ 77 (99)
T 2y43_A 22 LLRCGICFEYFNIAMIIPQCSHNYCSLCIRKFLSYKTQCPTCCVTVTEPDLKNNRI 77 (99)
T ss_dssp HTBCTTTCSBCSSEEECTTTCCEEEHHHHHHHHTTCCBCTTTCCBCCGGGCEECHH
T ss_pred CCCcccCChhhCCcCEECCCCCHhhHHHHHHHHHCCCCCCCCCCcCChhhCCcCHH
Confidence 45799999999999987 78999999999999986555565555555555544443
No 76
>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens}
Probab=97.14 E-value=0.00038 Score=62.06 Aligned_cols=47 Identities=13% Similarity=0.015 Sum_probs=38.4
Q ss_pred CccccCCCCCCCCceecCCCCeeeHHhHHHHHHhcC-CCCCCCCCCCC
Q 007574 39 FYCCALTFTPFEDPVCTADGSVFELMSITPYIRKYG-KHPVTGTPLKL 85 (597)
Q Consensus 39 f~~C~LSl~pl~~PV~t~~G~ly~ke~Il~~L~k~~-~~Pvtg~~l~l 85 (597)
...|+|++..|.+||..+-||+|++.+|..|+.... .+|+.+.++..
T Consensus 52 ~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 99 (124)
T 3fl2_A 52 TFQCICCQELVFRPITTVCQHNVCKDCLDRSFRAQVFSCPACRYDLGR 99 (124)
T ss_dssp HTBCTTTSSBCSSEEECTTSCEEEHHHHHHHHHTTCCBCTTTCCBCCT
T ss_pred CCCCCcCChHHcCcEEeeCCCcccHHHHHHHHhHCcCCCCCCCccCCC
Confidence 457999999999999999999999999999998433 45665555554
No 77
>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.12 E-value=0.00057 Score=56.19 Aligned_cols=46 Identities=17% Similarity=0.214 Sum_probs=37.9
Q ss_pred CccccCCCCCCCCceecCCCCeeeHHhHHHHHHhcCCCCCCCCCCC
Q 007574 39 FYCCALTFTPFEDPVCTADGSVFELMSITPYIRKYGKHPVTGTPLK 84 (597)
Q Consensus 39 f~~C~LSl~pl~~PV~t~~G~ly~ke~Il~~L~k~~~~Pvtg~~l~ 84 (597)
...|+|++..+.+||+++-||+|++.+|..||......|+-+.++.
T Consensus 15 ~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~ 60 (81)
T 2csy_A 15 PFRCFICRQAFQNPVVTKCRHYFCESCALEHFRATPRCYICDQPTG 60 (81)
T ss_dssp CSBCSSSCSBCCSEEECTTSCEEEHHHHHHHHHHCSBCSSSCCBCC
T ss_pred CCCCcCCCchhcCeeEccCCCHhHHHHHHHHHHCCCcCCCcCcccc
Confidence 4579999999999999999999999999999986545555554443
No 78
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=97.06 E-value=0.00028 Score=70.56 Aligned_cols=55 Identities=18% Similarity=0.204 Sum_probs=44.7
Q ss_pred CcccccccccccccCceeEEEEecCcceehHHHHHHHhhcccCccccCCCCCCCCCCeeE
Q 007574 98 EGEYHCPVLNKVFTEFTHIVAVKTTGNVFCFEAIKELNIKTKNWKELLTDEPFTKEDLIT 157 (597)
Q Consensus 98 ~~~~~CPvt~k~ft~~t~~v~ik~~G~V~s~eai~~l~~k~k~~~~lv~~~~f~~~DII~ 157 (597)
...|.||||...|.+- | +-+|||+|+..||.+..... ...||+|..+++..++|+
T Consensus 206 ~~~~~c~i~~~~~~dP---v-~~~~gh~f~~~~i~~~~~~~-~~~cP~~~~~~~~~~l~~ 260 (281)
T 2c2l_A 206 PDYLCGKISFELMREP---C-ITPSGITYDRKDIEEHLQRV-GHFNPVTRSPLTQEQLIP 260 (281)
T ss_dssp CSTTBCTTTCSBCSSE---E-ECSSCCEEETTHHHHHHHHT-CSSCTTTCCCCCGGGCEE
T ss_pred CcccCCcCcCCHhcCC---e-ECCCCCEECHHHHHHHHHHC-CCCCcCCCCCCchhcCcc
Confidence 3578999999999976 3 46799999999999875432 234999999999888885
No 79
>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.05 E-value=0.00039 Score=54.90 Aligned_cols=51 Identities=14% Similarity=0.138 Sum_probs=44.2
Q ss_pred CCccccCCCCCCCCceecCCCCeeeHHhHHHHHH-hcCCCCCCCCCCCCCCc
Q 007574 38 PFYCCALTFTPFEDPVCTADGSVFELMSITPYIR-KYGKHPVTGTPLKLEDL 88 (597)
Q Consensus 38 pf~~C~LSl~pl~~PV~t~~G~ly~ke~Il~~L~-k~~~~Pvtg~~l~lkdL 88 (597)
.-..|+|++..+.+||.++-||+|++.+|..||. .....|+-+.++..++|
T Consensus 14 ~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~i 65 (66)
T 2ecy_A 14 DKYKCEKCHLVLCSPKQTECGHRFCESCMAALLSSSSPKCTACQESIVKDKV 65 (66)
T ss_dssp CCEECTTTCCEESSCCCCSSSCCCCHHHHHHHHTTSSCCCTTTCCCCCTTTC
T ss_pred cCCCCCCCChHhcCeeECCCCCHHHHHHHHHHHHhCcCCCCCCCcCCChhhc
Confidence 3567999999999999999999999999999995 44568888888887776
No 80
>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens}
Probab=97.02 E-value=0.00087 Score=54.31 Aligned_cols=47 Identities=13% Similarity=0.048 Sum_probs=40.1
Q ss_pred CccccCCCCCCCCceecC-CCCeeeHHhHHHHHHhc--CCCCCCCCCCCC
Q 007574 39 FYCCALTFTPFEDPVCTA-DGSVFELMSITPYIRKY--GKHPVTGTPLKL 85 (597)
Q Consensus 39 f~~C~LSl~pl~~PV~t~-~G~ly~ke~Il~~L~k~--~~~Pvtg~~l~l 85 (597)
...|+|++..|.+||..+ -||+|++.+|..||... ...|+-+.++..
T Consensus 15 ~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~~ 64 (74)
T 2yur_A 15 ELLCLICKDIMTDAVVIPCCGNSYCDECIRTALLESDEHTCPTCHQNDVS 64 (74)
T ss_dssp GGSCSSSCCCCTTCEECSSSCCEECTTHHHHHHHHSSSSCCSSSCCSSCC
T ss_pred CCCCcCCChHHhCCeEcCCCCCHHHHHHHHHHHHhcCCCcCCCCCCcCCC
Confidence 567999999999999999 69999999999999876 367887776443
No 81
>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens}
Probab=96.97 E-value=0.00014 Score=59.21 Aligned_cols=59 Identities=19% Similarity=0.247 Sum_probs=48.4
Q ss_pred CCccccCCCCCCCCceecCCCCeeeHHhHHHHHHh-------cCCCCCCCCCCCCCCccccccccc
Q 007574 38 PFYCCALTFTPFEDPVCTADGSVFELMSITPYIRK-------YGKHPVTGTPLKLEDLIPLTFHKN 96 (597)
Q Consensus 38 pf~~C~LSl~pl~~PV~t~~G~ly~ke~Il~~L~k-------~~~~Pvtg~~l~lkdLi~l~f~kn 96 (597)
....|+|++..+.+||..+-||+|++.+|..|+.. ....|+-+.++...+|.++....+
T Consensus 11 ~~~~C~IC~~~~~~p~~l~CgH~fC~~Ci~~~~~~~~~~~~~~~~CP~Cr~~~~~~~l~~n~~l~~ 76 (79)
T 2egp_A 11 EEVTCPICLELLTEPLSLDCGHSLCRACITVSNKEAVTSMGGKSSCPVCGISYSFEHLQANQHLAN 76 (79)
T ss_dssp CCCEETTTTEECSSCCCCSSSCCCCHHHHSCCCCCCSSSCCCCCCCSSSCCCCCSSGGGTCSSSCC
T ss_pred cCCCCcCCCcccCCeeECCCCCHHHHHHHHHHHHhcccCCCCCCcCCCCCCcCCHhhCCcCHHHHH
Confidence 35679999999999999999999999999999976 445788787777777776665543
No 82
>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens}
Probab=96.97 E-value=0.00048 Score=55.88 Aligned_cols=56 Identities=18% Similarity=0.333 Sum_probs=44.0
Q ss_pred CcccccccccccccCceeEEEEecCcceehHHHHHHHhhcccCccccCCCCCCCCCCee
Q 007574 98 EGEYHCPVLNKVFTEFTHIVAVKTTGNVFCFEAIKELNIKTKNWKELLTDEPFTKEDLI 156 (597)
Q Consensus 98 ~~~~~CPvt~k~ft~~t~~v~ik~~G~V~s~eai~~l~~k~k~~~~lv~~~~f~~~DII 156 (597)
...+.|||+...|.+- |.+..|||+|+..||.+.........||+|..++...|.+
T Consensus 13 ~~~~~C~IC~~~~~~p---~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~~~~~~ 68 (74)
T 2yur_A 13 PDELLCLICKDIMTDA---VVIPCCGNSYCDECIRTALLESDEHTCPTCHQNDVSPDAL 68 (74)
T ss_dssp CGGGSCSSSCCCCTTC---EECSSSCCEECTTHHHHHHHHSSSSCCSSSCCSSCCTTTT
T ss_pred CCCCCCcCCChHHhCC---eEcCCCCCHHHHHHHHHHHHhcCCCcCCCCCCcCCCcccc
Confidence 4578999999999875 3333399999999999976544346899999998777765
No 83
>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=96.96 E-value=0.00037 Score=56.80 Aligned_cols=58 Identities=12% Similarity=0.084 Sum_probs=46.8
Q ss_pred CcccccccccccccCceeEEEEecCcceehHHHHHHHhhcccCccccCCCCCCCCCCeeEe
Q 007574 98 EGEYHCPVLNKVFTEFTHIVAVKTTGNVFCFEAIKELNIKTKNWKELLTDEPFTKEDLITI 158 (597)
Q Consensus 98 ~~~~~CPvt~k~ft~~t~~v~ik~~G~V~s~eai~~l~~k~k~~~~lv~~~~f~~~DII~L 158 (597)
...+.|||+...|.....++ +-+|||+|+.+||.+.... ...||+|..++...++++.
T Consensus 13 ~~~~~C~IC~~~~~~~~~~~-~~~C~H~fc~~Ci~~~~~~--~~~CP~Cr~~~~~~~~~~~ 70 (78)
T 2ect_A 13 GSGLECPVCKEDYALGESVR-QLPCNHLFHDSCIVPWLEQ--HDSCPVCRKSLTGQNTATN 70 (78)
T ss_dssp SSSCCCTTTTSCCCTTSCEE-ECTTSCEEETTTTHHHHTT--TCSCTTTCCCCCCSCSCCC
T ss_pred CCCCCCeeCCccccCCCCEE-EeCCCCeecHHHHHHHHHc--CCcCcCcCCccCCcccCCC
Confidence 45689999999998765544 4589999999999997543 3589999999999888753
No 84
>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=96.91 E-value=0.00065 Score=55.64 Aligned_cols=57 Identities=16% Similarity=0.261 Sum_probs=44.9
Q ss_pred CcccccccccccccCceeEEEEecCcceehHHHHHHHhhc----ccCccccCCCCCCCCCCeeEe
Q 007574 98 EGEYHCPVLNKVFTEFTHIVAVKTTGNVFCFEAIKELNIK----TKNWKELLTDEPFTKEDLITI 158 (597)
Q Consensus 98 ~~~~~CPvt~k~ft~~t~~v~ik~~G~V~s~eai~~l~~k----~k~~~~lv~~~~f~~~DII~L 158 (597)
...+.|||+...|.+-. +-+|||+|+.+|+.++... .....||+|..++...|+.+.
T Consensus 17 ~~~~~C~IC~~~~~~p~----~~~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~~~~~~n 77 (85)
T 2ecv_A 17 KEEVTCPICLELLTQPL----SLDCGHSFCQACLTANHKKSMLDKGESSCPVCRISYQPENIRPN 77 (85)
T ss_dssp CCCCCCTTTCSCCSSCB----CCSSSCCBCTTHHHHHHHHHHHTTSCCCCTTTCCSSCSSSCCCS
T ss_pred cCCCCCCCCCcccCCce----eCCCCCHHHHHHHHHHHHHhhcCCCCCcCCCCCCccCHHhcCcc
Confidence 45689999999998642 2389999999999987543 235689999999998877643
No 85
>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens}
Probab=96.89 E-value=0.00093 Score=56.12 Aligned_cols=50 Identities=18% Similarity=0.307 Sum_probs=40.2
Q ss_pred CcccccccccccccCceeEEEEec-CcceehHHHHHHHhhcccCccccCCCCCCC
Q 007574 98 EGEYHCPVLNKVFTEFTHIVAVKT-TGNVFCFEAIKELNIKTKNWKELLTDEPFT 151 (597)
Q Consensus 98 ~~~~~CPvt~k~ft~~t~~v~ik~-~G~V~s~eai~~l~~k~k~~~~lv~~~~f~ 151 (597)
...+.|||+...|.+- |. -+ |||+|+..||.+.........||+|..+|.
T Consensus 11 ~~~~~C~IC~~~~~~p---~~-~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~ 61 (92)
T 3ztg_A 11 PDELLCLICKDIMTDA---VV-IPCCGNSYCDECIRTALLESDEHTCPTCHQNDV 61 (92)
T ss_dssp CTTTEETTTTEECSSC---EE-CTTTCCEECHHHHHHHHHHCTTCCCTTTCCSSC
T ss_pred CcCCCCCCCChhhcCc---eE-CCCCCCHHHHHHHHHHHHhcCCCcCcCCCCcCC
Confidence 4568999999999865 33 36 999999999998755444568999999984
No 86
>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=96.88 E-value=0.002 Score=51.52 Aligned_cols=51 Identities=22% Similarity=0.317 Sum_probs=40.6
Q ss_pred CCccccCCCCCCCCceecCCCCeeeHHhHHHHHHh---cCCCCCCCCCCCCCCc
Q 007574 38 PFYCCALTFTPFEDPVCTADGSVFELMSITPYIRK---YGKHPVTGTPLKLEDL 88 (597)
Q Consensus 38 pf~~C~LSl~pl~~PV~t~~G~ly~ke~Il~~L~k---~~~~Pvtg~~l~lkdL 88 (597)
....|+|++..+.+||+.+-||+|+..+|..||.. ....|+-+.++...+|
T Consensus 19 ~~~~C~IC~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~~~ 72 (73)
T 2ysl_A 19 EEVICPICLDILQKPVTIDCGHNFCLKCITQIGETSCGFFKCPLCKTSVRKNAI 72 (73)
T ss_dssp CCCBCTTTCSBCSSEEECTTCCEEEHHHHHHHCSSSCSCCCCSSSCCCCCCCCC
T ss_pred cCCEeccCCcccCCeEEcCCCChhhHHHHHHHHHcCCCCCCCCCCCCcCCcccC
Confidence 35679999999999999999999999999999972 2345666666655554
No 87
>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B
Probab=96.88 E-value=0.00078 Score=63.00 Aligned_cols=55 Identities=15% Similarity=0.216 Sum_probs=43.4
Q ss_pred CcccccccccccccCceeEEEEecCcceehHHHHHHHhhcccCccccCCCCCCCCCCee
Q 007574 98 EGEYHCPVLNKVFTEFTHIVAVKTTGNVFCFEAIKELNIKTKNWKELLTDEPFTKEDLI 156 (597)
Q Consensus 98 ~~~~~CPvt~k~ft~~t~~v~ik~~G~V~s~eai~~l~~k~k~~~~lv~~~~f~~~DII 156 (597)
...+.||||...|.+- |.+.+|||+|+..||.+.... ....||+|..++...+.+
T Consensus 52 ~~~~~C~IC~~~~~~p---~~~~~CgH~fC~~Ci~~~~~~-~~~~CP~Cr~~~~~~~~l 106 (165)
T 2ckl_B 52 HSELMCPICLDMLKNT---MTTKECLHRFCADCIITALRS-GNKECPTCRKKLVSKRSL 106 (165)
T ss_dssp HHHHBCTTTSSBCSSE---EEETTTCCEEEHHHHHHHHHT-TCCBCTTTCCBCCSGGGE
T ss_pred CCCCCCcccChHhhCc---CEeCCCCChhHHHHHHHHHHh-CcCCCCCCCCcCCCcccC
Confidence 3568999999999873 555699999999999997543 356899999999765443
No 88
>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C
Probab=96.86 E-value=0.00062 Score=61.97 Aligned_cols=32 Identities=16% Similarity=0.284 Sum_probs=30.1
Q ss_pred cccCCCCCCCCceecCCCCeeeHHhHHHHHHh
Q 007574 41 CCALTFTPFEDPVCTADGSVFELMSITPYIRK 72 (597)
Q Consensus 41 ~C~LSl~pl~~PV~t~~G~ly~ke~Il~~L~k 72 (597)
.|+||+.+|.+||+.+-||+|+..+|..|+..
T Consensus 55 ~C~iC~~~~~~~~~~~CgH~fc~~Ci~~~~~~ 86 (138)
T 4ayc_A 55 QCIICSEYFIEAVTLNCAHSFCSYCINEWMKR 86 (138)
T ss_dssp BCTTTCSBCSSEEEETTSCEEEHHHHHHHTTT
T ss_pred CCcccCcccCCceECCCCCCccHHHHHHHHHc
Confidence 59999999999999999999999999999864
No 89
>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1
Probab=96.84 E-value=0.0011 Score=58.37 Aligned_cols=80 Identities=19% Similarity=0.190 Sum_probs=58.7
Q ss_pred CccccCCCCCCCCceecCCCCeeeHHhHHHHHHh-cCCCCCCCCCCCCCCcccccc-cccc--CcccccccccccccCce
Q 007574 39 FYCCALTFTPFEDPVCTADGSVFELMSITPYIRK-YGKHPVTGTPLKLEDLIPLTF-HKNA--EGEYHCPVLNKVFTEFT 114 (597)
Q Consensus 39 f~~C~LSl~pl~~PV~t~~G~ly~ke~Il~~L~k-~~~~Pvtg~~l~lkdLi~l~f-~kn~--~~~~~CPvt~k~ft~~t 114 (597)
...|+|++.++.+||.++-||+|++.+|..||.. ....|+-+.++...+|++... ..+. .-...||-
T Consensus 23 ~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~~~~l~~~i~~l~v~C~~--------- 93 (116)
T 1rmd_A 23 SISCQICEHILADPVETSCKHLFCRICILRCLKVMGSYCPSCRYPCFPTDLESPVKSFLNILNSLMVKCPA--------- 93 (116)
T ss_dssp HTBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHHTCSBCTTTCCBCCGGGCBCCCHHHHHHHHHCEEECCS---------
T ss_pred CCCCCCCCcHhcCcEEcCCCCcccHHHHHHHHhHCcCcCCCCCCCCCHhhccccHHHHHHHHHHhcCCCCC---------
Confidence 4569999999999999999999999999999987 556888888888877765422 1111 23345663
Q ss_pred eEEEEecCcceehHHHHH
Q 007574 115 HIVAVKTTGNVFCFEAIK 132 (597)
Q Consensus 115 ~~v~ik~~G~V~s~eai~ 132 (597)
..|+.++...-++
T Consensus 94 -----~gC~~~~~~~~~~ 106 (116)
T 1rmd_A 94 -----QDCNEEVSLEKYN 106 (116)
T ss_dssp -----TTCCCEEEHHHHH
T ss_pred -----CCCcchhhHhHHH
Confidence 2666666666554
No 90
>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=96.82 E-value=0.0018 Score=53.55 Aligned_cols=54 Identities=13% Similarity=0.249 Sum_probs=45.5
Q ss_pred CCccccCCCCCCCC----ceecCCCCeeeHHhHHHHHHhc---CCCCCCCCCCCCCCcccc
Q 007574 38 PFYCCALTFTPFED----PVCTADGSVFELMSITPYIRKY---GKHPVTGTPLKLEDLIPL 91 (597)
Q Consensus 38 pf~~C~LSl~pl~~----PV~t~~G~ly~ke~Il~~L~k~---~~~Pvtg~~l~lkdLi~l 91 (597)
....|+|++..+.+ |++.+-||+|++.+|..|+... ...|+-+.++...++..|
T Consensus 14 ~~~~C~IC~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~~i~~l 74 (88)
T 2ct2_A 14 EVLECPICMESFTEEQLRPKLLHCGHTICRQCLEKLLASSINGVRCPFCSKITRITSLTQL 74 (88)
T ss_dssp SCCBCTTTCCBCCTTSSCEEECSSSCEEEHHHHHHHHHHCSSCBCCTTTCCCBCCSSTTTS
T ss_pred CCCCCccCCccccccCCCeEECCCCChhhHHHHHHHHHcCCCCcCCCCCCCcccchhHHHH
Confidence 35679999999999 9999999999999999999876 567888888777665443
No 91
>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=96.81 E-value=0.00049 Score=55.24 Aligned_cols=53 Identities=15% Similarity=0.116 Sum_probs=44.6
Q ss_pred CCCccccCCCCCCCCceecCCCCeeeHHhHHHHHHhcCCCCCCCCCCCCCCcc
Q 007574 37 LPFYCCALTFTPFEDPVCTADGSVFELMSITPYIRKYGKHPVTGTPLKLEDLI 89 (597)
Q Consensus 37 lpf~~C~LSl~pl~~PV~t~~G~ly~ke~Il~~L~k~~~~Pvtg~~l~lkdLi 89 (597)
..-..|+|+++.+.+||..+-||+|+..+|..||......|+-+.++...+|+
T Consensus 13 ~~~~~C~IC~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~~~~~ 65 (71)
T 2d8t_A 13 LTVPECAICLQTCVHPVSLPCKHVFCYLCVKGASWLGKRCALCRQEIPEDFLD 65 (71)
T ss_dssp SSCCBCSSSSSBCSSEEEETTTEEEEHHHHHHCTTCSSBCSSSCCBCCHHHHS
T ss_pred CCCCCCccCCcccCCCEEccCCCHHHHHHHHHHHHCCCcCcCcCchhCHhhcc
Confidence 45667999999999999999999999999999998777777777776655544
No 92
>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A
Probab=96.75 E-value=0.00083 Score=50.71 Aligned_cols=52 Identities=15% Similarity=0.252 Sum_probs=42.6
Q ss_pred CcccccccccccccCceeEEEEecCcceehHHHHHHHhhcccCccccCCCCCCC
Q 007574 98 EGEYHCPVLNKVFTEFTHIVAVKTTGNVFCFEAIKELNIKTKNWKELLTDEPFT 151 (597)
Q Consensus 98 ~~~~~CPvt~k~ft~~t~~v~ik~~G~V~s~eai~~l~~k~k~~~~lv~~~~f~ 151 (597)
...+.|||+...|.+....+.+.+|||+|..++|.+..... ..||+|..++.
T Consensus 3 ~~~~~C~IC~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~--~~CP~Cr~~~~ 54 (55)
T 2ecm_A 3 SGSSGCPICLEDIHTSRVVAHVLPCGHLLHRTCYEEMLKEG--YRCPLCSGPSS 54 (55)
T ss_dssp SCCCSCTTTCCCCCTTTSCEEECTTSCEEETTHHHHHHHHT--CCCTTSCCSSC
T ss_pred CCCCcCcccChhhcCCCcCeEecCCCCcccHHHHHHHHHcC--CcCCCCCCcCC
Confidence 35688999999997766667788999999999999975433 58999988764
No 93
>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens}
Probab=96.75 E-value=0.00043 Score=56.29 Aligned_cols=56 Identities=20% Similarity=0.262 Sum_probs=43.6
Q ss_pred CcccccccccccccCceeEEEEecCcceehHHHHHHHhhc-----ccCccccCCCCCCCCCCeeE
Q 007574 98 EGEYHCPVLNKVFTEFTHIVAVKTTGNVFCFEAIKELNIK-----TKNWKELLTDEPFTKEDLIT 157 (597)
Q Consensus 98 ~~~~~CPvt~k~ft~~t~~v~ik~~G~V~s~eai~~l~~k-----~k~~~~lv~~~~f~~~DII~ 157 (597)
...+.|||+...|.+-.. -+|||+|+.+||.++... .....||+|..++...|+..
T Consensus 10 ~~~~~C~IC~~~~~~p~~----l~CgH~fC~~Ci~~~~~~~~~~~~~~~~CP~Cr~~~~~~~l~~ 70 (79)
T 2egp_A 10 QEEVTCPICLELLTEPLS----LDCGHSLCRACITVSNKEAVTSMGGKSSCPVCGISYSFEHLQA 70 (79)
T ss_dssp CCCCEETTTTEECSSCCC----CSSSCCCCHHHHSCCCCCCSSSCCCCCCCSSSCCCCCSSGGGT
T ss_pred ccCCCCcCCCcccCCeeE----CCCCCHHHHHHHHHHHHhcccCCCCCCcCCCCCCcCCHhhCCc
Confidence 467899999999987422 389999999999986443 12568999999998876553
No 94
>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=96.74 E-value=0.00064 Score=59.03 Aligned_cols=57 Identities=18% Similarity=0.225 Sum_probs=44.8
Q ss_pred cccccccccccccCceeEEEEecCcceehHHHHHHHhhc-ccCccccCCCCCCCCCCeeEec
Q 007574 99 GEYHCPVLNKVFTEFTHIVAVKTTGNVFCFEAIKELNIK-TKNWKELLTDEPFTKEDLITIQ 159 (597)
Q Consensus 99 ~~~~CPvt~k~ft~~t~~v~ik~~G~V~s~eai~~l~~k-~k~~~~lv~~~~f~~~DII~Lq 159 (597)
..+.||||...|.+-.. -+|||+|+..||.+.... .....||+|..++...+++...
T Consensus 20 ~~~~C~IC~~~~~~p~~----~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~~~~~~~ 77 (112)
T 1jm7_A 20 KILECPICLELIKEPVS----TKCDHIFCKFCMLKLLNQKKGPSQCPLCKNDITKRSLQEST 77 (112)
T ss_dssp HHTSCSSSCCCCSSCCB----CTTSCCCCSHHHHHHHHSSSSSCCCTTTSCCCCTTTCBCCC
T ss_pred CCCCCcccChhhcCeEE----CCCCCHHHHHHHHHHHHhCCCCCCCcCCCCcCCHhhcCccH
Confidence 46889999999976422 489999999999987543 2235899999999988877544
No 95
>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B
Probab=96.72 E-value=0.0011 Score=61.91 Aligned_cols=34 Identities=15% Similarity=0.168 Sum_probs=30.8
Q ss_pred CccccCCCCCCCCceec-CCCCeeeHHhHHHHHHh
Q 007574 39 FYCCALTFTPFEDPVCT-ADGSVFELMSITPYIRK 72 (597)
Q Consensus 39 f~~C~LSl~pl~~PV~t-~~G~ly~ke~Il~~L~k 72 (597)
...|+||+..|.+||.+ +-||+|++.+|..||..
T Consensus 54 ~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~ 88 (165)
T 2ckl_B 54 ELMCPICLDMLKNTMTTKECLHRFCADCIITALRS 88 (165)
T ss_dssp HHBCTTTSSBCSSEEEETTTCCEEEHHHHHHHHHT
T ss_pred CCCCcccChHhhCcCEeCCCCChhHHHHHHHHHHh
Confidence 44799999999999987 88999999999999973
No 96
>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A
Probab=96.70 E-value=0.0015 Score=57.79 Aligned_cols=60 Identities=23% Similarity=0.384 Sum_probs=46.6
Q ss_pred cccccCcccccccccccccCceeEEEEecCcceehHHHHHHHhhcccCccccCCCCCCCCCCeeE
Q 007574 93 FHKNAEGEYHCPVLNKVFTEFTHIVAVKTTGNVFCFEAIKELNIKTKNWKELLTDEPFTKEDLIT 157 (597)
Q Consensus 93 f~kn~~~~~~CPvt~k~ft~~t~~v~ik~~G~V~s~eai~~l~~k~k~~~~lv~~~~f~~~DII~ 157 (597)
|...-...+.|||+...|.+- | +-+|||+|+..||.+..... ...||+|..++...+++.
T Consensus 11 ~~~~~~~~~~C~IC~~~~~~p---~-~~~CgH~fC~~Ci~~~~~~~-~~~CP~Cr~~~~~~~~~~ 70 (118)
T 3hct_A 11 FDPPLESKYECPICLMALREA---V-QTPCGHRFCKACIIKSIRDA-GHKCPVDNEILLENQLFP 70 (118)
T ss_dssp BSSCCCGGGBCTTTCSBCSSE---E-ECTTSCEEEHHHHHHHHHHH-CSBCTTTCCBCCGGGCEE
T ss_pred hccCCCCCCCCCcCChhhcCe---E-ECCcCChhhHHHHHHHHhhC-CCCCCCCCCCcCHHhccc
Confidence 445556789999999999865 3 24899999999999864432 348999999999877663
No 97
>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A
Probab=96.69 E-value=0.00093 Score=58.02 Aligned_cols=35 Identities=20% Similarity=0.171 Sum_probs=31.8
Q ss_pred CccccCCCCCCCCceec-CCCCeeeHHhHHHHHHhc
Q 007574 39 FYCCALTFTPFEDPVCT-ADGSVFELMSITPYIRKY 73 (597)
Q Consensus 39 f~~C~LSl~pl~~PV~t-~~G~ly~ke~Il~~L~k~ 73 (597)
...|+|++..+.+||.. +-||+|++.+|..|+...
T Consensus 15 ~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~ 50 (108)
T 2ckl_A 15 HLMCVLCGGYFIDATTIIECLHSFCKTCIVRYLETS 50 (108)
T ss_dssp GTBCTTTSSBCSSEEEETTTCCEEEHHHHHHHHTSC
T ss_pred cCCCccCChHHhCcCEeCCCCChhhHHHHHHHHHhC
Confidence 56799999999999996 889999999999999753
No 98
>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=96.68 E-value=0.00099 Score=52.46 Aligned_cols=53 Identities=15% Similarity=0.370 Sum_probs=42.9
Q ss_pred CcccccccccccccCc---eeEEEEecCcceehHHHHHHHhhcccCccccCCCCCCCC
Q 007574 98 EGEYHCPVLNKVFTEF---THIVAVKTTGNVFCFEAIKELNIKTKNWKELLTDEPFTK 152 (597)
Q Consensus 98 ~~~~~CPvt~k~ft~~---t~~v~ik~~G~V~s~eai~~l~~k~k~~~~lv~~~~f~~ 152 (597)
...+.|||+...|.+. .+.+++.+|||+|+.+||.+.... ...||+|..+|+.
T Consensus 13 ~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~--~~~CP~Cr~~~~~ 68 (69)
T 2ea6_A 13 SGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKN--ANTCPTCRKKINH 68 (69)
T ss_dssp TCCCCCTTTCCCHHHHTTTTCCEEECSSSCEEEHHHHHHHHHH--CSSCTTTCCCCCC
T ss_pred CCCCCCcccCccccccccccCCeEeCCCCChhcHHHHHHHHHc--CCCCCCCCCccCc
Confidence 4678999999999763 455677899999999999987543 3589999998865
No 99
>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens}
Probab=96.65 E-value=0.0015 Score=55.80 Aligned_cols=54 Identities=13% Similarity=0.156 Sum_probs=43.0
Q ss_pred CcccccccccccccCceeEEEEecCcceehHHHHHHHhhcccCccccCCCCCCCCCCee
Q 007574 98 EGEYHCPVLNKVFTEFTHIVAVKTTGNVFCFEAIKELNIKTKNWKELLTDEPFTKEDLI 156 (597)
Q Consensus 98 ~~~~~CPvt~k~ft~~t~~v~ik~~G~V~s~eai~~l~~k~k~~~~lv~~~~f~~~DII 156 (597)
...+.||||...|.+. |.+.+|||+|+..||.+.... ...||+|..++...|++
T Consensus 20 ~~~~~C~IC~~~~~~p---~~~~~CgH~fC~~Ci~~~~~~--~~~CP~Cr~~~~~~~l~ 73 (99)
T 2y43_A 20 DDLLRCGICFEYFNIA---MIIPQCSHNYCSLCIRKFLSY--KTQCPTCCVTVTEPDLK 73 (99)
T ss_dssp HHHTBCTTTCSBCSSE---EECTTTCCEEEHHHHHHHHTT--CCBCTTTCCBCCGGGCE
T ss_pred CCCCCcccCChhhCCc---CEECCCCCHhhHHHHHHHHHC--CCCCCCCCCcCChhhCC
Confidence 3568999999999863 444589999999999997543 35899999999876655
No 100
>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=96.57 E-value=0.003 Score=51.81 Aligned_cols=48 Identities=19% Similarity=0.268 Sum_probs=39.3
Q ss_pred CcccccccccccccCceeEEEEecCcceehHHHHHHHhhcccCccccCCCCCCC
Q 007574 98 EGEYHCPVLNKVFTEFTHIVAVKTTGNVFCFEAIKELNIKTKNWKELLTDEPFT 151 (597)
Q Consensus 98 ~~~~~CPvt~k~ft~~t~~v~ik~~G~V~s~eai~~l~~k~k~~~~lv~~~~f~ 151 (597)
...+.|||+...|.+- ++-+|||+|+..||.+.... ...||+|..++.
T Consensus 13 ~~~~~C~IC~~~~~~p----~~~~CgH~fC~~Ci~~~~~~--~~~CP~Cr~~~~ 60 (81)
T 2csy_A 13 EIPFRCFICRQAFQNP----VVTKCRHYFCESCALEHFRA--TPRCYICDQPTG 60 (81)
T ss_dssp CCCSBCSSSCSBCCSE----EECTTSCEEEHHHHHHHHHH--CSBCSSSCCBCC
T ss_pred CCCCCCcCCCchhcCe----eEccCCCHhHHHHHHHHHHC--CCcCCCcCcccc
Confidence 4568999999999763 24699999999999997543 458999999886
No 101
>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=96.55 E-value=0.00098 Score=53.40 Aligned_cols=53 Identities=15% Similarity=0.164 Sum_probs=41.7
Q ss_pred CcccccccccccccCceeEEEEecCcceehHHHHHHHhhcccCccccCCCCCCCCCCee
Q 007574 98 EGEYHCPVLNKVFTEFTHIVAVKTTGNVFCFEAIKELNIKTKNWKELLTDEPFTKEDLI 156 (597)
Q Consensus 98 ~~~~~CPvt~k~ft~~t~~v~ik~~G~V~s~eai~~l~~k~k~~~~lv~~~~f~~~DII 156 (597)
...+.|||+...|.+- | +-+|||+|+++||.++... ...||+|..++...+++
T Consensus 13 ~~~~~C~IC~~~~~~~---~-~~~CgH~fC~~Ci~~~~~~--~~~CP~Cr~~~~~~~~~ 65 (71)
T 2d8t_A 13 LTVPECAICLQTCVHP---V-SLPCKHVFCYLCVKGASWL--GKRCALCRQEIPEDFLD 65 (71)
T ss_dssp SSCCBCSSSSSBCSSE---E-EETTTEEEEHHHHHHCTTC--SSBCSSSCCBCCHHHHS
T ss_pred CCCCCCccCCcccCCC---E-EccCCCHHHHHHHHHHHHC--CCcCcCcCchhCHhhcc
Confidence 4568999999998764 3 3389999999999986433 35899999999876654
No 102
>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens}
Probab=96.54 E-value=0.0018 Score=55.62 Aligned_cols=55 Identities=11% Similarity=0.250 Sum_probs=44.4
Q ss_pred cccccccccccccCceeEEEEecCcceehHHHHHHHhhcccCccccCCCCCCCCCCeeE
Q 007574 99 GEYHCPVLNKVFTEFTHIVAVKTTGNVFCFEAIKELNIKTKNWKELLTDEPFTKEDLIT 157 (597)
Q Consensus 99 ~~~~CPvt~k~ft~~t~~v~ik~~G~V~s~eai~~l~~k~k~~~~lv~~~~f~~~DII~ 157 (597)
..+.|||+...|.+- |.+-+|||+|+..||.+..... ...||+|..+|...+++.
T Consensus 21 ~~~~C~IC~~~~~~p---~~~~~CgH~FC~~Ci~~~~~~~-~~~CP~Cr~~~~~~~l~~ 75 (100)
T 3lrq_A 21 EVFRCFICMEKLRDA---RLCPHCSKLCCFSCIRRWLTEQ-RAQCPHCRAPLQLRELVN 75 (100)
T ss_dssp HHTBCTTTCSBCSSE---EECTTTCCEEEHHHHHHHHHHT-CSBCTTTCCBCCGGGCEE
T ss_pred CCCCCccCCccccCc---cccCCCCChhhHHHHHHHHHHC-cCCCCCCCCcCCHHHhHh
Confidence 568999999999853 4447999999999999875433 258999999998887774
No 103
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=96.53 E-value=0.0017 Score=57.59 Aligned_cols=60 Identities=15% Similarity=0.339 Sum_probs=49.2
Q ss_pred CcccccccccccccCc---eeEEEEecCcceehHHHHHHHhhcccCccccCCCCCCCCCCeeEec
Q 007574 98 EGEYHCPVLNKVFTEF---THIVAVKTTGNVFCFEAIKELNIKTKNWKELLTDEPFTKEDLITIQ 159 (597)
Q Consensus 98 ~~~~~CPvt~k~ft~~---t~~v~ik~~G~V~s~eai~~l~~k~k~~~~lv~~~~f~~~DII~Lq 159 (597)
.+.+.|||+...|.+. .+.+++-+|||+|+.+||.+..... ..||+|..+|...+++.+.
T Consensus 5 ~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~--~~CP~Cr~~~~~~~l~~l~ 67 (133)
T 4ap4_A 5 SGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNA--NTCPTCRKKINHKRYHPIY 67 (133)
T ss_dssp CCSCBCTTTCCBHHHHHHTTCCEEEETTCCEEEHHHHHHHHTTC--SBCTTTCCBCTTTCEEECB
T ss_pred CCCCCCcccChhhhCccccccCeEecCCCChhhHHHHHHHHHhC--CCCCCCCCcCccccccccc
Confidence 3568999999999764 3555677999999999999975433 3899999999999998764
No 104
>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=96.40 E-value=0.0033 Score=50.97 Aligned_cols=55 Identities=13% Similarity=0.135 Sum_probs=46.4
Q ss_pred CCccccCCCCCCCCc---eecCCCCeeeHHhHHHHHHhcCCCCCCCCCCCCCCccccc
Q 007574 38 PFYCCALTFTPFEDP---VCTADGSVFELMSITPYIRKYGKHPVTGTPLKLEDLIPLT 92 (597)
Q Consensus 38 pf~~C~LSl~pl~~P---V~t~~G~ly~ke~Il~~L~k~~~~Pvtg~~l~lkdLi~l~ 92 (597)
.-..|+|++..|.+| ++.+-||+|...+|..||......|+-+.++...++.+..
T Consensus 14 ~~~~C~IC~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~~~~~~ 71 (78)
T 2ect_A 14 SGLECPVCKEDYALGESVRQLPCNHLFHDSCIVPWLEQHDSCPVCRKSLTGQNTATNP 71 (78)
T ss_dssp SSCCCTTTTSCCCTTSCEEECTTSCEEETTTTHHHHTTTCSCTTTCCCCCCSCSCCCC
T ss_pred CCCCCeeCCccccCCCCEEEeCCCCeecHHHHHHHHHcCCcCcCcCCccCCcccCCCC
Confidence 456799999999876 3457899999999999999888889998888888877653
No 105
>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A
Probab=96.38 E-value=0.004 Score=53.95 Aligned_cols=51 Identities=14% Similarity=0.137 Sum_probs=41.4
Q ss_pred CcccccccccccccCceeEEEEecCcceehHHHHHHHhhcccCccccCCCCCCCCC
Q 007574 98 EGEYHCPVLNKVFTEFTHIVAVKTTGNVFCFEAIKELNIKTKNWKELLTDEPFTKE 153 (597)
Q Consensus 98 ~~~~~CPvt~k~ft~~t~~v~ik~~G~V~s~eai~~l~~k~k~~~~lv~~~~f~~~ 153 (597)
...+.||||...|.+- |.+.+|||+|+..||.+.... ...||+|..++...
T Consensus 13 ~~~~~C~IC~~~~~~p---~~~~~CgH~fC~~Ci~~~~~~--~~~CP~Cr~~~~~~ 63 (108)
T 2ckl_A 13 NPHLMCVLCGGYFIDA---TTIIECLHSFCKTCIVRYLET--SKYCPICDVQVHKT 63 (108)
T ss_dssp GGGTBCTTTSSBCSSE---EEETTTCCEEEHHHHHHHHTS--CSBCTTTCCBSCSS
T ss_pred CCcCCCccCChHHhCc---CEeCCCCChhhHHHHHHHHHh--CCcCcCCCcccccc
Confidence 4578999999999863 445699999999999987543 35899999988764
No 106
>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=96.35 E-value=0.0049 Score=49.42 Aligned_cols=52 Identities=12% Similarity=0.026 Sum_probs=41.1
Q ss_pred CcccccccccccccCceeEEEEecCcceehHHHHHHHhhcccCccccCCCCCCCC
Q 007574 98 EGEYHCPVLNKVFTEFTHIVAVKTTGNVFCFEAIKELNIKTKNWKELLTDEPFTK 152 (597)
Q Consensus 98 ~~~~~CPvt~k~ft~~t~~v~ik~~G~V~s~eai~~l~~k~k~~~~lv~~~~f~~ 152 (597)
.....|||+...|.....++ +-+|||+|..+||.+..... ..||+|..++..
T Consensus 13 ~~~~~C~IC~~~~~~~~~~~-~~~C~H~f~~~Ci~~~~~~~--~~CP~Cr~~~~~ 64 (74)
T 2ep4_A 13 NLHELCAVCLEDFKPRDELG-ICPCKHAFHRKCLIKWLEVR--KVCPLCNMPVLQ 64 (74)
T ss_dssp CCSCBCSSSCCBCCSSSCEE-EETTTEEEEHHHHHHHHHHC--SBCTTTCCBCSS
T ss_pred CCCCCCcCCCcccCCCCcEE-EcCCCCEecHHHHHHHHHcC--CcCCCcCccccc
Confidence 45678999999998766655 44899999999999875433 389999988754
No 107
>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens}
Probab=96.34 E-value=0.0025 Score=56.61 Aligned_cols=50 Identities=6% Similarity=0.135 Sum_probs=40.3
Q ss_pred CcccccccccccccCceeEEEEecCcceehHHHHHHHhhcccCccccCCCCCCCC
Q 007574 98 EGEYHCPVLNKVFTEFTHIVAVKTTGNVFCFEAIKELNIKTKNWKELLTDEPFTK 152 (597)
Q Consensus 98 ~~~~~CPvt~k~ft~~t~~v~ik~~G~V~s~eai~~l~~k~k~~~~lv~~~~f~~ 152 (597)
...+.||||...|.+- |. -+|||+|+..||.+... .....||+|..++..
T Consensus 50 ~~~~~C~IC~~~~~~p---~~-~~CgH~fC~~Ci~~~~~-~~~~~CP~Cr~~~~~ 99 (124)
T 3fl2_A 50 EETFQCICCQELVFRP---IT-TVCQHNVCKDCLDRSFR-AQVFSCPACRYDLGR 99 (124)
T ss_dssp HHHTBCTTTSSBCSSE---EE-CTTSCEEEHHHHHHHHH-TTCCBCTTTCCBCCT
T ss_pred ccCCCCCcCChHHcCc---EE-eeCCCcccHHHHHHHHh-HCcCCCCCCCccCCC
Confidence 4568999999999864 22 39999999999988644 344589999999976
No 108
>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=96.32 E-value=0.0025 Score=50.10 Aligned_cols=48 Identities=15% Similarity=0.272 Sum_probs=40.3
Q ss_pred CCccccCCCCCCCCc-------eecCCCCeeeHHhHHHHHHhcCCCCCCCCCCCC
Q 007574 38 PFYCCALTFTPFEDP-------VCTADGSVFELMSITPYIRKYGKHPVTGTPLKL 85 (597)
Q Consensus 38 pf~~C~LSl~pl~~P-------V~t~~G~ly~ke~Il~~L~k~~~~Pvtg~~l~l 85 (597)
....|+|++..+.+| ++.+-||+|...+|..||......|+-+.++..
T Consensus 14 ~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~ 68 (69)
T 2ea6_A 14 GTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINH 68 (69)
T ss_dssp CCCCCTTTCCCHHHHTTTTCCEEECSSSCEEEHHHHHHHHHHCSSCTTTCCCCCC
T ss_pred CCCCCcccCccccccccccCCeEeCCCCChhcHHHHHHHHHcCCCCCCCCCccCc
Confidence 456799999999988 778889999999999999987777777666543
No 109
>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=96.25 E-value=0.00097 Score=58.90 Aligned_cols=48 Identities=25% Similarity=0.410 Sum_probs=36.3
Q ss_pred CccccCCCCCCCCceec-CCCCeeeHHhHHHHHHhcCCCCCCCCCCCCCCc
Q 007574 39 FYCCALTFTPFEDPVCT-ADGSVFELMSITPYIRKYGKHPVTGTPLKLEDL 88 (597)
Q Consensus 39 f~~C~LSl~pl~~PV~t-~~G~ly~ke~Il~~L~k~~~~Pvtg~~l~lkdL 88 (597)
...|+|++..|.+||.. +-||+|++.+|..|+. ...|+-+.++...+|
T Consensus 22 ~~~C~IC~~~~~~pv~~~~CgH~fC~~Ci~~~~~--~~CP~Cr~~~~~~~~ 70 (117)
T 1jm7_B 22 LLRCSRCTNILREPVCLGGCEHIFCSNCVSDCIG--TGCPVCYTPAWIQDL 70 (117)
T ss_dssp TTSCSSSCSCCSSCBCCCSSSCCBCTTTGGGGTT--TBCSSSCCBCSCSSC
T ss_pred CCCCCCCChHhhCccEeCCCCCHHHHHHHHHHhc--CCCcCCCCcCccccc
Confidence 56799999999999998 8899999999999975 334444444433333
No 110
>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=96.23 E-value=0.0017 Score=51.60 Aligned_cols=53 Identities=11% Similarity=0.160 Sum_probs=43.2
Q ss_pred CcccccccccccccCceeEEEEecCcceehHHHHHHHhhcccCccccCCCCCCCCCCeeE
Q 007574 98 EGEYHCPVLNKVFTEFTHIVAVKTTGNVFCFEAIKELNIKTKNWKELLTDEPFTKEDLIT 157 (597)
Q Consensus 98 ~~~~~CPvt~k~ft~~t~~v~ik~~G~V~s~eai~~l~~k~k~~~~lv~~~~f~~~DII~ 157 (597)
...+.|||+...|.+ ++-+|||+|+.+|+.+... ....||+|..++...|.+.
T Consensus 13 ~~~~~C~IC~~~~~~-----~~~~CgH~fc~~Ci~~~~~--~~~~CP~Cr~~~~~~~~~~ 65 (70)
T 2ecn_A 13 TDEEECCICMDGRAD-----LILPCAHSFCQKCIDKWSD--RHRNCPICRLQMTGANESS 65 (70)
T ss_dssp CCCCCCSSSCCSCCS-----EEETTTEEECHHHHHHSSC--CCSSCHHHHHCTTCCCCCC
T ss_pred CCCCCCeeCCcCccC-----cccCCCCcccHHHHHHHHH--CcCcCCCcCCcccCCCccc
Confidence 456899999999987 4568999999999998643 4568999999998776553
No 111
>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=96.21 E-value=0.0053 Score=47.73 Aligned_cols=35 Identities=23% Similarity=0.287 Sum_probs=32.3
Q ss_pred CCccccCCCCCCCCceecCCCCeeeHHhHHHHHHh
Q 007574 38 PFYCCALTFTPFEDPVCTADGSVFELMSITPYIRK 72 (597)
Q Consensus 38 pf~~C~LSl~pl~~PV~t~~G~ly~ke~Il~~L~k 72 (597)
....|+|++..+.+||..+-||+|++.+|..||..
T Consensus 19 ~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~ 53 (63)
T 2ysj_A 19 EEVICPICLDILQKPVTIDCGHNFCLKCITQIGET 53 (63)
T ss_dssp CCCBCTTTCSBCSSCEECTTSSEECHHHHHHHHHH
T ss_pred cCCCCCcCCchhCCeEEeCCCCcchHHHHHHHHHc
Confidence 35679999999999999999999999999999984
No 112
>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=96.21 E-value=0.0062 Score=49.12 Aligned_cols=65 Identities=14% Similarity=0.067 Sum_probs=47.0
Q ss_pred CCCccccccccc--cCcccccccccccccCceeEEEEecCcceehHHHHHHHhhcccCccccCCCCCCCC
Q 007574 85 LEDLIPLTFHKN--AEGEYHCPVLNKVFTEFTHIVAVKTTGNVFCFEAIKELNIKTKNWKELLTDEPFTK 152 (597)
Q Consensus 85 lkdLi~l~f~kn--~~~~~~CPvt~k~ft~~t~~v~ik~~G~V~s~eai~~l~~k~k~~~~lv~~~~f~~ 152 (597)
++.|-...|..+ ......|||+...|.....++ .-+|||+|..+||.+.... +..||+|..++..
T Consensus 6 i~~lp~~~~~~~~~~~~~~~C~IC~~~~~~~~~~~-~l~C~H~fh~~Ci~~w~~~--~~~CP~Cr~~~~~ 72 (75)
T 1x4j_A 6 SGQLPSYRFNPNNHQSEQTLCVVCMCDFESRQLLR-VLPCNHEFHAKCVDKWLKA--NRTCPICRADSGP 72 (75)
T ss_dssp CSSCCCEEBCSSSCSSSCCEETTTTEECCBTCEEE-EETTTEEEETTHHHHHHHH--CSSCTTTCCCCCC
T ss_pred HhhCCcEEecCccccCCCCCCeECCcccCCCCeEE-EECCCCHhHHHHHHHHHHc--CCcCcCcCCcCCC
Confidence 344544445433 346789999999998765544 4579999999999987543 3589999888764
No 113
>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=96.18 E-value=0.0034 Score=49.19 Aligned_cols=54 Identities=20% Similarity=0.341 Sum_probs=45.4
Q ss_pred ccccCCCC-CCCCc----eecCCCCeeeHHhHHHHHHhc-CCCCCCCCCCCCCCcccccc
Q 007574 40 YCCALTFT-PFEDP----VCTADGSVFELMSITPYIRKY-GKHPVTGTPLKLEDLIPLTF 93 (597)
Q Consensus 40 ~~C~LSl~-pl~~P----V~t~~G~ly~ke~Il~~L~k~-~~~Pvtg~~l~lkdLi~l~f 93 (597)
..|+|++. .+.+| ++.+-||+|++.+|..|+... ...|+-+.++...+|.++-|
T Consensus 4 ~~C~IC~~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~~~ 63 (65)
T 1g25_A 4 QGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVRGAGNCPECGTPLRKSNFRVQLF 63 (65)
T ss_dssp TCCSTTTTHHHHCSSCCEEECTTCCCEEHHHHHHHHHTTSSSCTTTCCCCSSCCCEEECC
T ss_pred CcCCcCCCCccCCCccCeecCCCCCHhHHHHHHHHHHcCCCcCCCCCCccccccceeecc
Confidence 46999999 88888 568889999999999998653 45899899998888887765
No 114
>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens}
Probab=96.06 E-value=0.0069 Score=47.88 Aligned_cols=52 Identities=12% Similarity=0.110 Sum_probs=40.4
Q ss_pred CcccccccccccccCceeEEEEecCcceehHHHHHHHhhcccCccccCCCCCCCC
Q 007574 98 EGEYHCPVLNKVFTEFTHIVAVKTTGNVFCFEAIKELNIKTKNWKELLTDEPFTK 152 (597)
Q Consensus 98 ~~~~~CPvt~k~ft~~t~~v~ik~~G~V~s~eai~~l~~k~k~~~~lv~~~~f~~ 152 (597)
.....|||+...|.....+ .+-+|||+|...||.+..... ..||+|..++..
T Consensus 12 ~~~~~C~IC~~~~~~~~~~-~~~~C~H~fc~~Ci~~~~~~~--~~CP~Cr~~~~~ 63 (69)
T 2kiz_A 12 DTEEKCTICLSILEEGEDV-RRLPCMHLFHQVCVDQWLITN--KKCPICRVDIEA 63 (69)
T ss_dssp TCCCSBTTTTBCCCSSSCE-EECTTSCEEEHHHHHHHHHHC--SBCTTTCSBSCS
T ss_pred CCCCCCeeCCccccCCCcE-EEeCCCCHHHHHHHHHHHHcC--CCCcCcCccccC
Confidence 4568899999999765444 456899999999999875433 479999887754
No 115
>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=96.05 E-value=0.0062 Score=47.33 Aligned_cols=47 Identities=21% Similarity=0.445 Sum_probs=35.9
Q ss_pred ccCcccccccccccccCceeEEEEecCcceehHHHHHHHhhc-ccCccccCC
Q 007574 96 NAEGEYHCPVLNKVFTEFTHIVAVKTTGNVFCFEAIKELNIK-TKNWKELLT 146 (597)
Q Consensus 96 n~~~~~~CPvt~k~ft~~t~~v~ik~~G~V~s~eai~~l~~k-~k~~~~lv~ 146 (597)
.-...+.|||+...|.+- |.+ +|||+|+.+||.++... .....||+|
T Consensus 16 ~~~~~~~C~IC~~~~~~p---~~~-~CgH~fC~~Ci~~~~~~~~~~~~CP~C 63 (63)
T 2ysj_A 16 KLQEEVICPICLDILQKP---VTI-DCGHNFCLKCITQIGETSCGFFKCPLC 63 (63)
T ss_dssp CCCCCCBCTTTCSBCSSC---EEC-TTSSEECHHHHHHHHHHCSSCCCCSCC
T ss_pred hCccCCCCCcCCchhCCe---EEe-CCCCcchHHHHHHHHHcCCCCCcCcCC
Confidence 345678999999999864 323 99999999999997542 234578887
No 116
>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1
Probab=95.98 E-value=0.0023 Score=56.10 Aligned_cols=54 Identities=15% Similarity=0.127 Sum_probs=43.3
Q ss_pred CcccccccccccccCceeEEEEecCcceehHHHHHHHhhcccCccccCCCCCCCCCCee
Q 007574 98 EGEYHCPVLNKVFTEFTHIVAVKTTGNVFCFEAIKELNIKTKNWKELLTDEPFTKEDLI 156 (597)
Q Consensus 98 ~~~~~CPvt~k~ft~~t~~v~ik~~G~V~s~eai~~l~~k~k~~~~lv~~~~f~~~DII 156 (597)
...+.|||+...|.+- | +-+|||+|+..||.+..... ...||+|..++...|++
T Consensus 21 ~~~~~C~IC~~~~~~p---~-~~~CgH~fC~~Ci~~~~~~~-~~~CP~Cr~~~~~~~~~ 74 (116)
T 1rmd_A 21 VKSISCQICEHILADP---V-ETSCKHLFCRICILRCLKVM-GSYCPSCRYPCFPTDLE 74 (116)
T ss_dssp HHHTBCTTTCSBCSSE---E-ECTTSCEEEHHHHHHHHHHT-CSBCTTTCCBCCGGGCB
T ss_pred cCCCCCCCCCcHhcCc---E-EcCCCCcccHHHHHHHHhHC-cCcCCCCCCCCCHhhcc
Confidence 4578999999999864 2 25899999999999875432 35799999999988776
No 117
>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens}
Probab=95.98 E-value=0.0045 Score=57.37 Aligned_cols=52 Identities=8% Similarity=0.103 Sum_probs=41.5
Q ss_pred CcccccccccccccCceeEEEEecCcceehHHHHHHHhhcccCccccCCCCCCCCCC
Q 007574 98 EGEYHCPVLNKVFTEFTHIVAVKTTGNVFCFEAIKELNIKTKNWKELLTDEPFTKED 154 (597)
Q Consensus 98 ~~~~~CPvt~k~ft~~t~~v~ik~~G~V~s~eai~~l~~k~k~~~~lv~~~~f~~~D 154 (597)
...+.||||...|.+- | +-+|||+|+..||.+.... ....||+|..++...+
T Consensus 76 ~~~~~C~IC~~~~~~p---v-~~~CgH~fC~~Ci~~~~~~-~~~~CP~Cr~~~~~~~ 127 (150)
T 1z6u_A 76 EQSFMCVCCQELVYQP---V-TTECFHNVCKDCLQRSFKA-QVFSCPACRHDLGQNY 127 (150)
T ss_dssp HHHTBCTTTSSBCSSE---E-ECTTSCEEEHHHHHHHHHT-TCCBCTTTCCBCCTTC
T ss_pred ccCCEeecCChhhcCC---E-EcCCCCchhHHHHHHHHHh-CCCcCCCCCccCCCCC
Confidence 3568999999999864 2 2599999999999997543 4457999999998764
No 118
>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1
Probab=95.89 E-value=0.012 Score=46.30 Aligned_cols=45 Identities=18% Similarity=0.291 Sum_probs=39.2
Q ss_pred ccccCCCCCCCCc-eecCCCCeeeHHhHHHHHHhcCCCCCCCCCCC
Q 007574 40 YCCALTFTPFEDP-VCTADGSVFELMSITPYIRKYGKHPVTGTPLK 84 (597)
Q Consensus 40 ~~C~LSl~pl~~P-V~t~~G~ly~ke~Il~~L~k~~~~Pvtg~~l~ 84 (597)
..|+|++..+.+| ++.+-||+|...+|..|+......|+-+.++.
T Consensus 6 ~~C~IC~~~~~~~~~~~~C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~ 51 (68)
T 1chc_A 6 ERCPICLEDPSNYSMALPCLHAFCYVCITRWIRQNPTCPLCKVPVE 51 (68)
T ss_dssp CCCSSCCSCCCSCEEETTTTEEESTTHHHHHHHHSCSTTTTCCCCC
T ss_pred CCCeeCCccccCCcEecCCCCeeHHHHHHHHHhCcCcCcCCChhhH
Confidence 4699999999998 56788999999999999998888888876664
No 119
>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1
Probab=95.86 E-value=0.004 Score=46.94 Aligned_cols=51 Identities=12% Similarity=0.026 Sum_probs=40.7
Q ss_pred CcccccccccccccCceeEEEEecCcceehHHHHHHHhhcccCccccCCCCCC
Q 007574 98 EGEYHCPVLNKVFTEFTHIVAVKTTGNVFCFEAIKELNIKTKNWKELLTDEPF 150 (597)
Q Consensus 98 ~~~~~CPvt~k~ft~~t~~v~ik~~G~V~s~eai~~l~~k~k~~~~lv~~~~f 150 (597)
++...|||+...|.+....+.+..|||+|..++|.+.... +..||+|..++
T Consensus 3 ~~~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~w~~~--~~~CP~Cr~~~ 53 (55)
T 1iym_A 3 DDGVECAVCLAELEDGEEARFLPRCGHGFHAECVDMWLGS--HSTCPLCRLTV 53 (55)
T ss_dssp CCSCCCTTTCCCCCTTSCCEECSSSCCEECTTHHHHTTTT--CCSCSSSCCCS
T ss_pred CCCCcCccCCccccCCCceEECCCCCCcccHHHHHHHHHc--CCcCcCCCCEe
Confidence 3567899999999887666656569999999999986433 45899998765
No 120
>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}
Probab=95.82 E-value=0.0073 Score=56.53 Aligned_cols=62 Identities=23% Similarity=0.375 Sum_probs=48.4
Q ss_pred cccccccCcccccccccccccCceeEEEEecCcceehHHHHHHHhhcccCccccCCCCCCCCCCeeE
Q 007574 91 LTFHKNAEGEYHCPVLNKVFTEFTHIVAVKTTGNVFCFEAIKELNIKTKNWKELLTDEPFTKEDLIT 157 (597)
Q Consensus 91 l~f~kn~~~~~~CPvt~k~ft~~t~~v~ik~~G~V~s~eai~~l~~k~k~~~~lv~~~~f~~~DII~ 157 (597)
+.|...-...|.|||+...|.+- | .-+|||+|+..||.++... ....||+|..++...+++.
T Consensus 9 ~~~~~~~~~~~~C~IC~~~~~~p---v-~~~CgH~fC~~Ci~~~~~~-~~~~CP~Cr~~~~~~~~~~ 70 (170)
T 3hcs_A 9 VEFDPPLESKYECPICLMALREA---V-QTPCGHRFCKACIIKSIRD-AGHKCPVDNEILLENQLFP 70 (170)
T ss_dssp SEESSCCCGGGBCTTTCSBCSSE---E-ECTTSCEEEHHHHHHHHHH-HCSBCTTTCCBCCGGGCEE
T ss_pred hhhccCCCCCCCCCCCChhhcCc---E-ECCCCCHHHHHHHHHHHHh-CCCCCCCCccCcchhhhhh
Confidence 34555667789999999999865 2 2589999999999997543 2348999999998877663
No 121
>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=95.77 E-value=0.0016 Score=57.48 Aligned_cols=52 Identities=17% Similarity=0.206 Sum_probs=41.2
Q ss_pred CcccccccccccccCceeEEEEecCcceehHHHHHHHhhcccCccccCCCCCCCCCCee
Q 007574 98 EGEYHCPVLNKVFTEFTHIVAVKTTGNVFCFEAIKELNIKTKNWKELLTDEPFTKEDLI 156 (597)
Q Consensus 98 ~~~~~CPvt~k~ft~~t~~v~ik~~G~V~s~eai~~l~~k~k~~~~lv~~~~f~~~DII 156 (597)
...+.||||...|.+- |.+.+|||+|+..||.+... ..||+|..++...|+.
T Consensus 20 ~~~~~C~IC~~~~~~p---v~~~~CgH~fC~~Ci~~~~~----~~CP~Cr~~~~~~~~~ 71 (117)
T 1jm7_B 20 EKLLRCSRCTNILREP---VCLGGCEHIFCSNCVSDCIG----TGCPVCYTPAWIQDLK 71 (117)
T ss_dssp HHTTSCSSSCSCCSSC---BCCCSSSCCBCTTTGGGGTT----TBCSSSCCBCSCSSCC
T ss_pred hhCCCCCCCChHhhCc---cEeCCCCCHHHHHHHHHHhc----CCCcCCCCcCcccccc
Confidence 3568999999999865 44458999999999988642 4799999998765554
No 122
>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB: 2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A 2ldr_A*
Probab=95.76 E-value=0.0056 Score=65.21 Aligned_cols=53 Identities=15% Similarity=0.160 Sum_probs=44.3
Q ss_pred CccccCCCCCCCCceecCCCCeeeHHhHHHHHH-hcCCCCCCCCCCCCCCcccc
Q 007574 39 FYCCALTFTPFEDPVCTADGSVFELMSITPYIR-KYGKHPVTGTPLKLEDLIPL 91 (597)
Q Consensus 39 f~~C~LSl~pl~~PV~t~~G~ly~ke~Il~~L~-k~~~~Pvtg~~l~lkdLi~l 91 (597)
+..|+||++.+.+||+.+-||+||..||..|+. ....+|+.+.++...+++.+
T Consensus 332 ~~~C~ICle~~~~pv~lpCGH~FC~~Ci~~wl~~~~~~CP~CR~~i~~~~~i~v 385 (389)
T 2y1n_A 332 FQLCKICAENDKDVKIEPCGHLMCTSCLTSWQESEGQGCPFCRCEIKGTEPIVV 385 (389)
T ss_dssp SSBCTTTSSSBCCEEEETTCCEECHHHHHHHHHHTCSBCTTTCCBCCEEEECSC
T ss_pred CCCCCccCcCCCCeEEeCCCChhhHHHHHHHHhcCCCCCCCCCCccCCceeEec
Confidence 468999999999999999999999999999998 45667777777666655544
No 123
>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A
Probab=95.66 E-value=0.016 Score=43.39 Aligned_cols=45 Identities=9% Similarity=0.182 Sum_probs=37.3
Q ss_pred CccccCCCCCCCC----ceecCCCCeeeHHhHHHHHHhcCCCCCCCCCC
Q 007574 39 FYCCALTFTPFED----PVCTADGSVFELMSITPYIRKYGKHPVTGTPL 83 (597)
Q Consensus 39 f~~C~LSl~pl~~----PV~t~~G~ly~ke~Il~~L~k~~~~Pvtg~~l 83 (597)
-..|+|+++.+.+ |++.+-||+|...+|.+||......|+-+.++
T Consensus 5 ~~~C~IC~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~ 53 (55)
T 2ecm_A 5 SSGCPICLEDIHTSRVVAHVLPCGHLLHRTCYEEMLKEGYRCPLCSGPS 53 (55)
T ss_dssp CCSCTTTCCCCCTTTSCEEECTTSCEEETTHHHHHHHHTCCCTTSCCSS
T ss_pred CCcCcccChhhcCCCcCeEecCCCCcccHHHHHHHHHcCCcCCCCCCcC
Confidence 3569999999976 67788899999999999999876677766554
No 124
>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens}
Probab=95.65 E-value=0.012 Score=49.44 Aligned_cols=52 Identities=12% Similarity=0.042 Sum_probs=40.8
Q ss_pred CcccccccccccccCceeEEEEecCcceehHHHHHHHhhcccCccccCCCCCCCC
Q 007574 98 EGEYHCPVLNKVFTEFTHIVAVKTTGNVFCFEAIKELNIKTKNWKELLTDEPFTK 152 (597)
Q Consensus 98 ~~~~~CPvt~k~ft~~t~~v~ik~~G~V~s~eai~~l~~k~k~~~~lv~~~~f~~ 152 (597)
..+..||||...|.....++. -+|||+|...||.+.... +..||+|..++..
T Consensus 38 ~~~~~C~IC~~~~~~~~~~~~-l~C~H~Fh~~Ci~~wl~~--~~~CP~Cr~~~~~ 89 (91)
T 2l0b_A 38 GQEMCCPICCSEYVKGDVATE-LPCHHYFHKPCVSIWLQK--SGTCPVCRCMFPP 89 (91)
T ss_dssp SSCSEETTTTEECCTTCEEEE-ETTTEEEEHHHHHHHHTT--TCBCTTTCCBSSC
T ss_pred CCCCCCcccChhhcCCCcEEe-cCCCChHHHHHHHHHHHc--CCcCcCcCccCCC
Confidence 456889999999987665554 469999999999996543 3489999887753
No 125
>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C
Probab=95.65 E-value=0.0094 Score=54.05 Aligned_cols=48 Identities=19% Similarity=0.311 Sum_probs=37.6
Q ss_pred cccccccccccccCceeEEEEecCcceehHHHHHHHhhcccCccccCCCCCCCC
Q 007574 99 GEYHCPVLNKVFTEFTHIVAVKTTGNVFCFEAIKELNIKTKNWKELLTDEPFTK 152 (597)
Q Consensus 99 ~~~~CPvt~k~ft~~t~~v~ik~~G~V~s~eai~~l~~k~k~~~~lv~~~~f~~ 152 (597)
.++.||||...|.+- | +-+|||+|+..||.+.... ...||+|..++..
T Consensus 52 ~~~~C~iC~~~~~~~---~-~~~CgH~fc~~Ci~~~~~~--~~~CP~Cr~~~~~ 99 (138)
T 4ayc_A 52 NELQCIICSEYFIEA---V-TLNCAHSFCSYCINEWMKR--KIECPICRKDIKS 99 (138)
T ss_dssp HHSBCTTTCSBCSSE---E-EETTSCEEEHHHHHHHTTT--CSBCTTTCCBCCC
T ss_pred ccCCCcccCcccCCc---e-ECCCCCCccHHHHHHHHHc--CCcCCCCCCcCCC
Confidence 457899999999763 3 3489999999999986433 3579999887754
No 126
>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=95.41 E-value=0.015 Score=43.99 Aligned_cols=34 Identities=21% Similarity=0.302 Sum_probs=31.3
Q ss_pred CCccccCCCCCCCCceecCCCCeeeHHhHHHHHH
Q 007574 38 PFYCCALTFTPFEDPVCTADGSVFELMSITPYIR 71 (597)
Q Consensus 38 pf~~C~LSl~pl~~PV~t~~G~ly~ke~Il~~L~ 71 (597)
....|+|++..+.+||..+-||+|++.+|..|+.
T Consensus 14 ~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~ 47 (58)
T 2ecj_A 14 VEASCSVCLEYLKEPVIIECGHNFCKACITRWWE 47 (58)
T ss_dssp CCCBCSSSCCBCSSCCCCSSCCCCCHHHHHHHTT
T ss_pred cCCCCccCCcccCccEeCCCCCccCHHHHHHHHH
Confidence 4567999999999999999999999999999975
No 127
>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1
Probab=95.38 E-value=0.013 Score=50.94 Aligned_cols=55 Identities=5% Similarity=0.074 Sum_probs=42.1
Q ss_pred cccccccccccccCce--------------eEEEEecCcceehHHHHHHHhhc---ccCccccCCCCCCCCC
Q 007574 99 GEYHCPVLNKVFTEFT--------------HIVAVKTTGNVFCFEAIKELNIK---TKNWKELLTDEPFTKE 153 (597)
Q Consensus 99 ~~~~CPvt~k~ft~~t--------------~~v~ik~~G~V~s~eai~~l~~k---~k~~~~lv~~~~f~~~ 153 (597)
.+..||||...|.... .++.+-+|||+|..+||.+.... .....||+|-..|...
T Consensus 24 ~~~~C~ICl~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H~Fh~~Ci~~wl~~~~~~~~~~CP~CR~~~~~~ 95 (114)
T 1v87_A 24 PEEDCIICMEKLAVASGYSDMTDSKALGPMVVGRLTKCSHAFHLLCLLAMYCNGNKDGSLQCPSCKTIYGEK 95 (114)
T ss_dssp CSCEETTTTEETTSCCSTTTTCCCSSSCSSCCEEESSSCCEECHHHHHHHHHHTCCSSCCBCTTTCCBSSSC
T ss_pred CCCcCccCChhhcCcccccccccccccCcccceecCCCCCcccHHHHHHHHHcccCCCCCcCCCCCCccCCC
Confidence 3468999999986532 45668899999999999987532 2346899999999754
No 128
>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1
Probab=95.20 E-value=0.015 Score=45.68 Aligned_cols=49 Identities=16% Similarity=0.224 Sum_probs=39.1
Q ss_pred CcccccccccccccCceeEEEEecCcceehHHHHHHHhhcccCccccCCCCCCC
Q 007574 98 EGEYHCPVLNKVFTEFTHIVAVKTTGNVFCFEAIKELNIKTKNWKELLTDEPFT 151 (597)
Q Consensus 98 ~~~~~CPvt~k~ft~~t~~v~ik~~G~V~s~eai~~l~~k~k~~~~lv~~~~f~ 151 (597)
+....|||+...|.+. +.+.+|||+|+.+|+.+.... ...||+|..++.
T Consensus 3 ~~~~~C~IC~~~~~~~---~~~~~C~H~fc~~Ci~~~~~~--~~~CP~Cr~~~~ 51 (68)
T 1chc_A 3 TVAERCPICLEDPSNY---SMALPCLHAFCYVCITRWIRQ--NPTCPLCKVPVE 51 (68)
T ss_dssp CCCCCCSSCCSCCCSC---EEETTTTEEESTTHHHHHHHH--SCSTTTTCCCCC
T ss_pred CCCCCCeeCCccccCC---cEecCCCCeeHHHHHHHHHhC--cCcCcCCChhhH
Confidence 3457899999998764 356789999999999986533 358999999886
No 129
>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B
Probab=95.19 E-value=0.0072 Score=49.92 Aligned_cols=56 Identities=14% Similarity=0.196 Sum_probs=42.8
Q ss_pred CcccccccccccccCceeEEEEe--cCcceehHHHHHHHhhcccCccccCCCCCCCCCCee
Q 007574 98 EGEYHCPVLNKVFTEFTHIVAVK--TTGNVFCFEAIKELNIKTKNWKELLTDEPFTKEDLI 156 (597)
Q Consensus 98 ~~~~~CPvt~k~ft~~t~~v~ik--~~G~V~s~eai~~l~~k~k~~~~lv~~~~f~~~DII 156 (597)
..++.|||+...|+..-. .+. +|||.|+..|+.++... ....||+|-.+|...+++
T Consensus 9 ~~~~~CpICle~~~~~d~--~~~p~~CGH~fC~~Cl~~~~~~-~~~~CP~CR~~~~~~~~~ 66 (78)
T 1e4u_A 9 EDPVECPLCMEPLEIDDI--NFFPCTCGYQICRFCWHRIRTD-ENGLCPACRKPYPEDPAV 66 (78)
T ss_dssp CCCCBCTTTCCBCCTTTT--TCCSSTTSCCCCHHHHHHHTTS-SCSBCTTTCCBCSSCSSC
T ss_pred ccCCcCCccCccCccccc--cccccCCCCCcCHHHHHHHHhc-CCCCCCCCCCccCCCchh
Confidence 467899999998863211 123 49999999999997433 457899999999988775
No 130
>3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens}
Probab=95.17 E-value=0.0057 Score=56.08 Aligned_cols=34 Identities=12% Similarity=0.255 Sum_probs=31.4
Q ss_pred CccccCCCCCCCCceecCCCCeeeHHhHHHHHHh
Q 007574 39 FYCCALTFTPFEDPVCTADGSVFELMSITPYIRK 72 (597)
Q Consensus 39 f~~C~LSl~pl~~PV~t~~G~ly~ke~Il~~L~k 72 (597)
-..|+|++..|.+||.++-||+|++.+|..||..
T Consensus 31 ~~~C~IC~~~~~~pv~~~CgH~FC~~Ci~~~~~~ 64 (141)
T 3knv_A 31 KYLCSACRNVLRRPFQAQCGHRYCSFCLASILSS 64 (141)
T ss_dssp GGBCTTTCSBCSSEEECTTSCEEEHHHHHHHGGG
T ss_pred CcCCCCCChhhcCcEECCCCCccCHHHHHHHHhc
Confidence 4579999999999999999999999999999964
No 131
>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, CHR protein, DNA repair, metal-binding, nucleus; 2.12A {Homo sapiens}
Probab=95.14 E-value=0.0068 Score=53.02 Aligned_cols=49 Identities=10% Similarity=0.173 Sum_probs=38.2
Q ss_pred CcccccccccccccCceeEEEEecCcceehHHHHHHHhhcccCccccCCCCCCC
Q 007574 98 EGEYHCPVLNKVFTEFTHIVAVKTTGNVFCFEAIKELNIKTKNWKELLTDEPFT 151 (597)
Q Consensus 98 ~~~~~CPvt~k~ft~~t~~v~ik~~G~V~s~eai~~l~~k~k~~~~lv~~~~f~ 151 (597)
..++.||||...|.+- |.+ +|||+|+..||.++.. .....||+|..++.
T Consensus 13 ~~~~~C~iC~~~~~~p---~~~-~CgH~fC~~Ci~~~~~-~~~~~CP~Cr~~~~ 61 (115)
T 3l11_A 13 LSECQCGICMEILVEP---VTL-PCNHTLCKPCFQSTVE-KASLCCPFCRRRVS 61 (115)
T ss_dssp HHHHBCTTTCSBCSSC---EEC-TTSCEECHHHHCCCCC-TTTSBCTTTCCBCH
T ss_pred CCCCCCccCCcccCce---eEc-CCCCHHhHHHHHHHHh-HCcCCCCCCCcccC
Confidence 4578999999999864 223 8999999999988643 23468999988775
No 132
>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB: 2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A 2ldr_A*
Probab=95.01 E-value=0.014 Score=62.17 Aligned_cols=55 Identities=9% Similarity=0.178 Sum_probs=43.7
Q ss_pred ccccccccccccCceeEEEEecCcceehHHHHHHHhhcccCccccCCCCCCCCCCeeEec
Q 007574 100 EYHCPVLNKVFTEFTHIVAVKTTGNVFCFEAIKELNIKTKNWKELLTDEPFTKEDLITIQ 159 (597)
Q Consensus 100 ~~~CPvt~k~ft~~t~~v~ik~~G~V~s~eai~~l~~k~k~~~~lv~~~~f~~~DII~Lq 159 (597)
...||||...+.+ +++-+|||+||..|+.+.... ....||+|-.++...++|.+.
T Consensus 332 ~~~C~ICle~~~~----pv~lpCGH~FC~~Ci~~wl~~-~~~~CP~CR~~i~~~~~i~v~ 386 (389)
T 2y1n_A 332 FQLCKICAENDKD----VKIEPCGHLMCTSCLTSWQES-EGQGCPFCRCEIKGTEPIVVD 386 (389)
T ss_dssp SSBCTTTSSSBCC----EEEETTCCEECHHHHHHHHHH-TCSBCTTTCCBCCEEEECSCC
T ss_pred CCCCCccCcCCCC----eEEeCCCChhhHHHHHHHHhc-CCCCCCCCCCccCCceeEecC
Confidence 3689999888864 356799999999999886431 345899999999988877654
No 133
>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens}
Probab=94.88 E-value=0.035 Score=43.68 Aligned_cols=47 Identities=13% Similarity=0.222 Sum_probs=36.8
Q ss_pred CCccccCCCCCCC---CceecCCCCeeeHHhHHHHHHhcCCCCCCCCCCC
Q 007574 38 PFYCCALTFTPFE---DPVCTADGSVFELMSITPYIRKYGKHPVTGTPLK 84 (597)
Q Consensus 38 pf~~C~LSl~pl~---~PV~t~~G~ly~ke~Il~~L~k~~~~Pvtg~~l~ 84 (597)
.-..|+|++..+. .+++.+-||+|...+|..||......|+-+.++.
T Consensus 13 ~~~~C~IC~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~ 62 (69)
T 2kiz_A 13 TEEKCTICLSILEEGEDVRRLPCMHLFHQVCVDQWLITNKKCPICRVDIE 62 (69)
T ss_dssp CCCSBTTTTBCCCSSSCEEECTTSCEEEHHHHHHHHHHCSBCTTTCSBSC
T ss_pred CCCCCeeCCccccCCCcEEEeCCCCHHHHHHHHHHHHcCCCCcCcCcccc
Confidence 3567999999885 4566888999999999999998666666555443
No 134
>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=94.80 E-value=0.021 Score=43.19 Aligned_cols=45 Identities=18% Similarity=0.268 Sum_probs=34.5
Q ss_pred CcccccccccccccCceeEEEEecCcceehHHHHHHHhhc-ccCccccCC
Q 007574 98 EGEYHCPVLNKVFTEFTHIVAVKTTGNVFCFEAIKELNIK-TKNWKELLT 146 (597)
Q Consensus 98 ~~~~~CPvt~k~ft~~t~~v~ik~~G~V~s~eai~~l~~k-~k~~~~lv~ 146 (597)
...+.|||+...|.+. ++-+|||+|+.++|.+.... .....||+|
T Consensus 13 ~~~~~C~IC~~~~~~p----~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~C 58 (58)
T 2ecj_A 13 QVEASCSVCLEYLKEP----VIIECGHNFCKACITRWWEDLERDFPCPVC 58 (58)
T ss_dssp CCCCBCSSSCCBCSSC----CCCSSCCCCCHHHHHHHTTSSCCSCCCSCC
T ss_pred ccCCCCccCCcccCcc----EeCCCCCccCHHHHHHHHHhcCCCCCCCCC
Confidence 4568999999999875 23489999999999997332 244678887
No 135
>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=94.79 E-value=0.023 Score=45.66 Aligned_cols=45 Identities=11% Similarity=0.221 Sum_probs=36.6
Q ss_pred CccccCCCCCCCCc---eecCCCCeeeHHhHHHHHHhcCCCCCCCCCC
Q 007574 39 FYCCALTFTPFEDP---VCTADGSVFELMSITPYIRKYGKHPVTGTPL 83 (597)
Q Consensus 39 f~~C~LSl~pl~~P---V~t~~G~ly~ke~Il~~L~k~~~~Pvtg~~l 83 (597)
-..|+|+++.+..+ ++.+-||+|...+|..||......|+-+.++
T Consensus 23 ~~~C~IC~~~~~~~~~~~~l~C~H~fh~~Ci~~w~~~~~~CP~Cr~~~ 70 (75)
T 1x4j_A 23 QTLCVVCMCDFESRQLLRVLPCNHEFHAKCVDKWLKANRTCPICRADS 70 (75)
T ss_dssp CCEETTTTEECCBTCEEEEETTTEEEETTHHHHHHHHCSSCTTTCCCC
T ss_pred CCCCeECCcccCCCCeEEEECCCCHhHHHHHHHHHHcCCcCcCcCCcC
Confidence 45799999999987 5677899999999999998766666655444
No 136
>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=94.73 E-value=0.029 Score=44.80 Aligned_cols=46 Identities=13% Similarity=0.208 Sum_probs=37.5
Q ss_pred CCccccCCCCCCCCceec---CCCCeeeHHhHHHHHHhcCCCCCCCCCC
Q 007574 38 PFYCCALTFTPFEDPVCT---ADGSVFELMSITPYIRKYGKHPVTGTPL 83 (597)
Q Consensus 38 pf~~C~LSl~pl~~PV~t---~~G~ly~ke~Il~~L~k~~~~Pvtg~~l 83 (597)
....|+|+++.+.+|... +-||+|...+|.+||......|+-+.++
T Consensus 14 ~~~~C~IC~~~~~~~~~~~~~~C~H~f~~~Ci~~~~~~~~~CP~Cr~~~ 62 (74)
T 2ep4_A 14 LHELCAVCLEDFKPRDELGICPCKHAFHRKCLIKWLEVRKVCPLCNMPV 62 (74)
T ss_dssp CSCBCSSSCCBCCSSSCEEEETTTEEEEHHHHHHHHHHCSBCTTTCCBC
T ss_pred CCCCCcCCCcccCCCCcEEEcCCCCEecHHHHHHHHHcCCcCCCcCccc
Confidence 356799999999987543 7899999999999999877777766554
No 137
>1wim_A KIAA0161 protein; ring finger domain, UBCM4-interacting protein 4, UIP4, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=94.72 E-value=0.0042 Score=52.58 Aligned_cols=57 Identities=9% Similarity=0.165 Sum_probs=41.4
Q ss_pred CcccccccccccccCceeEEEEecCcceehHHHHHHHhhc---c---cCccccC--CCCC--CCCCCe
Q 007574 98 EGEYHCPVLNKVFTEFTHIVAVKTTGNVFCFEAIKELNIK---T---KNWKELL--TDEP--FTKEDL 155 (597)
Q Consensus 98 ~~~~~CPvt~k~ft~~t~~v~ik~~G~V~s~eai~~l~~k---~---k~~~~lv--~~~~--f~~~DI 155 (597)
...+.|||+...|... .++.+.+|||+|+.+|+++.... . ....||. |... +...+|
T Consensus 3 ~~~~~C~IC~~~~~~~-~~~~l~~CgH~FC~~Cl~~~~~~~i~~g~~~~i~CP~~~C~~~~~~~~~~i 69 (94)
T 1wim_A 3 SGSSGCKLCLGEYPVE-QMTTIAQCQCIFCTLCLKQYVELLIKEGLETAISCPDAACPKQGHLQENEI 69 (94)
T ss_dssp CSBCCCSSSCCCCBGG-GEEEETTTTEEEEHHHHHHHHHHHHHHCSCCCEECSCTTCSSCCEECHHHH
T ss_pred CCCcCCcccCcccccc-cceEcCCCCCcccHHHHHHHHHHHhhcCCcccccCccccCCCCCccCHHHH
Confidence 3568899999998754 34556689999999999986532 1 2468999 9887 444433
No 138
>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1
Probab=94.63 E-value=0.022 Score=49.52 Aligned_cols=35 Identities=14% Similarity=0.207 Sum_probs=29.8
Q ss_pred CCccccCCCCCCCCce------------------ecCCCCeeeHHhHHHHHHh
Q 007574 38 PFYCCALTFTPFEDPV------------------CTADGSVFELMSITPYIRK 72 (597)
Q Consensus 38 pf~~C~LSl~pl~~PV------------------~t~~G~ly~ke~Il~~L~k 72 (597)
+-+.|+|++++|.+|+ +.+-||+|...+|..||..
T Consensus 24 ~~~~C~ICl~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H~Fh~~Ci~~wl~~ 76 (114)
T 1v87_A 24 PEEDCIICMEKLAVASGYSDMTDSKALGPMVVGRLTKCSHAFHLLCLLAMYCN 76 (114)
T ss_dssp CSCEETTTTEETTSCCSTTTTCCCSSSCSSCCEEESSSCCEECHHHHHHHHHH
T ss_pred CCCcCccCChhhcCcccccccccccccCcccceecCCCCCcccHHHHHHHHHc
Confidence 3457999999998875 5677999999999999953
No 139
>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens}
Probab=94.61 E-value=0.021 Score=48.01 Aligned_cols=45 Identities=16% Similarity=0.331 Sum_probs=36.2
Q ss_pred CccccCCCCCCCC---ceecCCCCeeeHHhHHHHHHhcCCCCCCCCCC
Q 007574 39 FYCCALTFTPFED---PVCTADGSVFELMSITPYIRKYGKHPVTGTPL 83 (597)
Q Consensus 39 f~~C~LSl~pl~~---PV~t~~G~ly~ke~Il~~L~k~~~~Pvtg~~l 83 (597)
-..|+|++..+.. ++..+-||+|...+|..||..+...|+-+.++
T Consensus 40 ~~~C~IC~~~~~~~~~~~~l~C~H~Fh~~Ci~~wl~~~~~CP~Cr~~~ 87 (91)
T 2l0b_A 40 EMCCPICCSEYVKGDVATELPCHHYFHKPCVSIWLQKSGTCPVCRCMF 87 (91)
T ss_dssp CSEETTTTEECCTTCEEEEETTTEEEEHHHHHHHHTTTCBCTTTCCBS
T ss_pred CCCCcccChhhcCCCcEEecCCCChHHHHHHHHHHHcCCcCcCcCccC
Confidence 4579999999987 77788999999999999998765556555443
No 140
>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1
Probab=94.56 E-value=0.029 Score=42.03 Aligned_cols=44 Identities=16% Similarity=0.277 Sum_probs=35.3
Q ss_pred ccccCCCCCCCC---ceecC-CCCeeeHHhHHHHHHhcCCCCCCCCCC
Q 007574 40 YCCALTFTPFED---PVCTA-DGSVFELMSITPYIRKYGKHPVTGTPL 83 (597)
Q Consensus 40 ~~C~LSl~pl~~---PV~t~-~G~ly~ke~Il~~L~k~~~~Pvtg~~l 83 (597)
..|+|+++.+.+ ++..+ -||+|...+|.+||......|+-+.++
T Consensus 6 ~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~w~~~~~~CP~Cr~~~ 53 (55)
T 1iym_A 6 VECAVCLAELEDGEEARFLPRCGHGFHAECVDMWLGSHSTCPLCRLTV 53 (55)
T ss_dssp CCCTTTCCCCCTTSCCEECSSSCCEECTTHHHHTTTTCCSCSSSCCCS
T ss_pred CcCccCCccccCCCceEECCCCCCcccHHHHHHHHHcCCcCcCCCCEe
Confidence 469999999987 77776 699999999999997766666655443
No 141
>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, CHR protein, DNA repair, metal-binding, nucleus; 2.12A {Homo sapiens}
Probab=94.44 E-value=0.01 Score=51.82 Aligned_cols=48 Identities=13% Similarity=0.254 Sum_probs=41.0
Q ss_pred CccccCCCCCCCCceecCCCCeeeHHhHHHHHHhcCCCCCCCCCCCCCCccccccccccCcccccccccccccC
Q 007574 39 FYCCALTFTPFEDPVCTADGSVFELMSITPYIRKYGKHPVTGTPLKLEDLIPLTFHKNAEGEYHCPVLNKVFTE 112 (597)
Q Consensus 39 f~~C~LSl~pl~~PV~t~~G~ly~ke~Il~~L~k~~~~Pvtg~~l~lkdLi~l~f~kn~~~~~~CPvt~k~ft~ 112 (597)
...|+|++..+.+||..+-||+|+..+|..|+.. +...||+|...+..
T Consensus 15 ~~~C~iC~~~~~~p~~~~CgH~fC~~Ci~~~~~~--------------------------~~~~CP~Cr~~~~~ 62 (115)
T 3l11_A 15 ECQCGICMEILVEPVTLPCNHTLCKPCFQSTVEK--------------------------ASLCCPFCRRRVSS 62 (115)
T ss_dssp HHBCTTTCSBCSSCEECTTSCEECHHHHCCCCCT--------------------------TTSBCTTTCCBCHH
T ss_pred CCCCccCCcccCceeEcCCCCHHhHHHHHHHHhH--------------------------CcCCCCCCCcccCc
Confidence 4579999999999999999999999999998752 23679999988863
No 142
>3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens}
Probab=94.43 E-value=0.014 Score=53.52 Aligned_cols=53 Identities=11% Similarity=0.137 Sum_probs=41.1
Q ss_pred cccCcccccccccccccCceeEEEEecCcceehHHHHHHHhhcccCccccCCCCCCCC
Q 007574 95 KNAEGEYHCPVLNKVFTEFTHIVAVKTTGNVFCFEAIKELNIKTKNWKELLTDEPFTK 152 (597)
Q Consensus 95 kn~~~~~~CPvt~k~ft~~t~~v~ik~~G~V~s~eai~~l~~k~k~~~~lv~~~~f~~ 152 (597)
..-..+|.||||...|.+- | .-+|||+|+..||.++. ......||+|..+...
T Consensus 26 ~~l~~~~~C~IC~~~~~~p---v-~~~CgH~FC~~Ci~~~~-~~~~~~CP~Cr~~~~~ 78 (141)
T 3knv_A 26 TKLEAKYLCSACRNVLRRP---F-QAQCGHRYCSFCLASIL-SSGPQNCAACVHEGIY 78 (141)
T ss_dssp GGCCGGGBCTTTCSBCSSE---E-ECTTSCEEEHHHHHHHG-GGSCEECHHHHHTTCC
T ss_pred ccCCcCcCCCCCChhhcCc---E-ECCCCCccCHHHHHHHH-hcCCCCCCCCCCcccc
Confidence 3446789999999999876 2 24999999999999974 3344689999886543
No 143
>2yho_A E3 ubiquitin-protein ligase mylip; ligase, E2 ligase-E3 ligase complex, ring zinc-finger, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 2yhn_A
Probab=94.37 E-value=0.029 Score=46.15 Aligned_cols=59 Identities=10% Similarity=0.053 Sum_probs=42.0
Q ss_pred cccccccccccccCceeEEEEecCcce-ehHHHHHHHhhcccCccccCCCCCCCCCCeeEecCCCCcchhcc
Q 007574 99 GEYHCPVLNKVFTEFTHIVAVKTTGNV-FCFEAIKELNIKTKNWKELLTDEPFTKEDLITIQNPNALDTKVT 169 (597)
Q Consensus 99 ~~~~CPvt~k~ft~~t~~v~ik~~G~V-~s~eai~~l~~k~k~~~~lv~~~~f~~~DII~Lqdp~~~~~~~~ 169 (597)
....|+|+...+.+ +++.||||+ |+.+|+..+ +.||+|-.++.. +|.+.-|.+....++
T Consensus 17 ~~~~C~IC~~~~~~----~v~~pCgH~~~C~~C~~~~------~~CP~Cr~~i~~--~~~i~~p~~~~~~~~ 76 (79)
T 2yho_A 17 EAMLCMVCCEEEIN----STFCPCGHTVCCESCAAQL------QSCPVCRSRVEH--VQHVYLPTHTSLLNL 76 (79)
T ss_dssp HHTBCTTTSSSBCC----EEEETTCBCCBCHHHHTTC------SBCTTTCCBCCE--EEECBCTTCCC----
T ss_pred CCCEeEEeCcccCc----EEEECCCCHHHHHHHHHhc------CcCCCCCchhhC--eEEEEeCcchhhhhh
Confidence 34689999877654 456799999 999999864 489999999976 566655655544443
No 144
>2vje_B MDM4 protein; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_B*
Probab=94.34 E-value=0.047 Score=42.80 Aligned_cols=55 Identities=15% Similarity=0.181 Sum_probs=40.9
Q ss_pred CcccccccccccccCceeEEEEecCcce-ehHHHHHHHhhcccCccccCCCCCCCCCCeeEe
Q 007574 98 EGEYHCPVLNKVFTEFTHIVAVKTTGNV-FCFEAIKELNIKTKNWKELLTDEPFTKEDLITI 158 (597)
Q Consensus 98 ~~~~~CPvt~k~ft~~t~~v~ik~~G~V-~s~eai~~l~~k~k~~~~lv~~~~f~~~DII~L 158 (597)
.....|+|+...+.+. .+++.||||+ ++++++.++... ...||+|..+++ ++|.|
T Consensus 5 ~~~~~C~IC~~~~~~~--~~~~~pCgH~~~C~~C~~~~~~~--~~~CPiCR~~i~--~~i~i 60 (63)
T 2vje_B 5 NLLKPCSLCEKRPRDG--NIIHGRTGHLVTCFHCARRLKKA--GASCPICKKEIQ--LVIKV 60 (63)
T ss_dssp GGGSBCTTTSSSBSCE--EEEETTEEEEEECHHHHHHHHHT--TCBCTTTCCBCC--EEEEE
T ss_pred CcCCCCcccCCcCCCe--EEEecCCCCHhHHHHHHHHHHHh--CCcCCCcCchhh--ceEEE
Confidence 3457899999877643 2445699998 999999997543 468999999884 45543
No 145
>2ecg_A Baculoviral IAP repeat-containing protein 4; BIRC4, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=94.13 E-value=0.016 Score=46.91 Aligned_cols=46 Identities=13% Similarity=0.121 Sum_probs=37.2
Q ss_pred CcccccccccccccCceeEEEEecCcce-ehHHHHHHHhhcccCccccCCCCCCCCC
Q 007574 98 EGEYHCPVLNKVFTEFTHIVAVKTTGNV-FCFEAIKELNIKTKNWKELLTDEPFTKE 153 (597)
Q Consensus 98 ~~~~~CPvt~k~ft~~t~~v~ik~~G~V-~s~eai~~l~~k~k~~~~lv~~~~f~~~ 153 (597)
...+.|||+...+.+- ++-+|||+ |+.+|++.+ ..||+|..++...
T Consensus 23 ~~~~~C~IC~~~~~~~----~~~pCgH~~~C~~C~~~~------~~CP~Cr~~i~~~ 69 (75)
T 2ecg_A 23 QEEKLCKICMDRNIAI----VFVPCGHLVTCKQCAEAV------DKCPMCYTVITFK 69 (75)
T ss_dssp HHHHSCSSSCSSCCCB----CCSSSCCCCBCHHHHHHC------SBCTTTCCBCCCC
T ss_pred CCCCCCCcCCCCCCCE----EEecCCCHHHHHHHhhCC------CCCccCCceecCc
Confidence 3568899999888653 45699999 999999763 4899999998764
No 146
>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=94.09 E-value=0.029 Score=46.20 Aligned_cols=49 Identities=12% Similarity=0.213 Sum_probs=38.0
Q ss_pred CCccccCCCCCCCC--------------ceecC-CCCeeeHHhHHHHHHhcCCCCCCCCCCCCC
Q 007574 38 PFYCCALTFTPFED--------------PVCTA-DGSVFELMSITPYIRKYGKHPVTGTPLKLE 86 (597)
Q Consensus 38 pf~~C~LSl~pl~~--------------PV~t~-~G~ly~ke~Il~~L~k~~~~Pvtg~~l~lk 86 (597)
.-+.|+|++++|.+ +++.+ -||+|-..+|.+||..+.+.|+-+.++...
T Consensus 14 ~~~~C~IC~~~~~~~C~iC~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~~~~CP~CR~~~~~~ 77 (81)
T 2ecl_A 14 ECDTCAICRVQVMDACLRCQAENKQEDCVVVWGECNHSFHNCCMSLWVKQNNRCPLCQQDWVVQ 77 (81)
T ss_dssp CCSCBTTTTBCTTSCCTTHHHHTCTTTCCEEEETTSCEEEHHHHHHHTTTCCBCTTTCCBCCEE
T ss_pred CCCCCcccChhhhccCcccccccCCCceEEEeCCCCCccChHHHHHHHHhCCCCCCcCCCcchh
Confidence 34569999999987 44444 699999999999998877777776665443
No 147
>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=93.82 E-value=0.011 Score=46.92 Aligned_cols=47 Identities=11% Similarity=0.094 Sum_probs=36.8
Q ss_pred CCccccCCCCCCCCceecCCCCeeeHHhHHHHHHhcCCCCCCCCCCCC
Q 007574 38 PFYCCALTFTPFEDPVCTADGSVFELMSITPYIRKYGKHPVTGTPLKL 85 (597)
Q Consensus 38 pf~~C~LSl~pl~~PV~t~~G~ly~ke~Il~~L~k~~~~Pvtg~~l~l 85 (597)
.-..|+|++..+.+ ++.+-||+|+..+|..||......|+-+.++..
T Consensus 14 ~~~~C~IC~~~~~~-~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~ 60 (70)
T 2ecn_A 14 DEEECCICMDGRAD-LILPCAHSFCQKCIDKWSDRHRNCPICRLQMTG 60 (70)
T ss_dssp CCCCCSSSCCSCCS-EEETTTEEECHHHHHHSSCCCSSCHHHHHCTTC
T ss_pred CCCCCeeCCcCccC-cccCCCCcccHHHHHHHHHCcCcCCCcCCcccC
Confidence 35679999999999 888999999999999998755555554444443
No 148
>2vje_A E3 ubiquitin-protein ligase MDM2; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_A* 2hdp_A
Probab=93.69 E-value=0.077 Score=41.71 Aligned_cols=54 Identities=17% Similarity=0.239 Sum_probs=39.8
Q ss_pred cccccccccccccCceeEEEEecCcce-ehHHHHHHHhhcccCccccCCCCCCCCCCeeEe
Q 007574 99 GEYHCPVLNKVFTEFTHIVAVKTTGNV-FCFEAIKELNIKTKNWKELLTDEPFTKEDLITI 158 (597)
Q Consensus 99 ~~~~CPvt~k~ft~~t~~v~ik~~G~V-~s~eai~~l~~k~k~~~~lv~~~~f~~~DII~L 158 (597)
.+..|+|+...+.+. ++...||||+ ++++++.++.. .++.||+|..++. ++|.|
T Consensus 7 ~~~~C~IC~~~~~~~--~~~~~pCgH~~~C~~C~~~~~~--~~~~CPiCR~~i~--~~i~i 61 (64)
T 2vje_A 7 AIEPCVICQGRPKNG--CIVHGKTGHLMACFTCAKKLKK--RNKPCPVCRQPIQ--MIVLT 61 (64)
T ss_dssp GGSCCTTTSSSCSCE--EEEETTEEEEEECHHHHHHHHH--TTCCCTTTCCCCC--EEEEE
T ss_pred CcCCCCcCCCCCCCE--EEECCCCCChhhHHHHHHHHHH--cCCcCCCcCcchh--ceEee
Confidence 456899999887654 1223499999 89999999764 3468999999884 45544
No 149
>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=93.59 E-value=0.032 Score=45.90 Aligned_cols=52 Identities=8% Similarity=0.039 Sum_probs=36.9
Q ss_pred ccccccccccc-----------CceeEEEEecCcceehHHHHHHHhhcccCccccCCCCCCCCCC
Q 007574 101 YHCPVLNKVFT-----------EFTHIVAVKTTGNVFCFEAIKELNIKTKNWKELLTDEPFTKED 154 (597)
Q Consensus 101 ~~CPvt~k~ft-----------~~t~~v~ik~~G~V~s~eai~~l~~k~k~~~~lv~~~~f~~~D 154 (597)
-.|+|+...|. +....+.+-+|||+|..+||.+..... -.||+|-.+|...+
T Consensus 16 ~~C~IC~~~~~~~C~iC~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~~--~~CP~CR~~~~~~~ 78 (81)
T 2ecl_A 16 DTCAICRVQVMDACLRCQAENKQEDCVVVWGECNHSFHNCCMSLWVKQN--NRCPLCQQDWVVQR 78 (81)
T ss_dssp SCBTTTTBCTTSCCTTHHHHTCTTTCCEEEETTSCEEEHHHHHHHTTTC--CBCTTTCCBCCEEE
T ss_pred CCCcccChhhhccCcccccccCCCceEEEeCCCCCccChHHHHHHHHhC--CCCCCcCCCcchhh
Confidence 34666666664 344456666799999999999964332 37999998876544
No 150
>3dpl_R Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} SCOP: g.44.1.1 PDB: 3dqv_R 3rtr_B 4f52_B 1u6g_B 2hye_D* 4a0c_D 4a0l_F* 1ldj_B 1ldk_C 2lgv_A
Probab=92.97 E-value=0.071 Score=46.50 Aligned_cols=46 Identities=15% Similarity=0.260 Sum_probs=36.7
Q ss_pred CccccCCCCCCCCc-----------------ee-cCCCCeeeHHhHHHHHHhcCCCCCCCCCCC
Q 007574 39 FYCCALTFTPFEDP-----------------VC-TADGSVFELMSITPYIRKYGKHPVTGTPLK 84 (597)
Q Consensus 39 f~~C~LSl~pl~~P-----------------V~-t~~G~ly~ke~Il~~L~k~~~~Pvtg~~l~ 84 (597)
-+.|+|+++.|.+| ++ .+-||+|-..+|.+||..+.+.|+-+.+..
T Consensus 37 ~d~CaIC~~~~~~~c~~C~~~~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~~~~CP~Cr~~~~ 100 (106)
T 3dpl_R 37 VDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNREWE 100 (106)
T ss_dssp SCCCSSSCSCTTSCCTTHHHHTTCC---CCCEEEETTSCEEEHHHHHHHHTTCSBCSSSCSBCC
T ss_pred CCCCccCChhHhCcCchhhccccccCCccceEeecccCcEECHHHHHHHHHcCCcCcCCCCcce
Confidence 46799999999977 22 566999999999999998777777665543
No 151
>3kop_A Uncharacterized protein; protein with A cyclophilin-like fold, structural genomics, J center for structural genomics, JCSG; 1.90A {Arthrobacter SP}
Probab=92.56 E-value=0.56 Score=44.60 Aligned_cols=32 Identities=16% Similarity=0.260 Sum_probs=26.4
Q ss_pred eEEEEEEeCee--EEEEeCCCCChhhHHHHHHHH
Q 007574 349 GYVQLHTTHGD--LNIELHCDITPRSCENFITLC 380 (597)
Q Consensus 349 ~~V~l~T~~G~--I~IEL~~d~aP~tv~NFl~L~ 380 (597)
-|++|.-..+. ++.+|..+.||+||+.|+.+.
T Consensus 22 r~i~itl~~~g~~~~A~Lldd~APkTcaA~~~~L 55 (188)
T 3kop_A 22 RYINITLEKRGVTCKALLLDDVAPRTSKAVWDAL 55 (188)
T ss_dssp CEEEEEETTTTEEEEEEECTTTSHHHHHHHHHHC
T ss_pred eEEEEEEecCCeEEEEEEccccChHHHHHHHHhC
Confidence 57777766653 688999999999999999975
No 152
>4ic3_A E3 ubiquitin-protein ligase XIAP; ring domain, zinc-finger, E3 ligase; 1.78A {Homo sapiens} PDB: 4ic2_A
Probab=92.45 E-value=0.043 Score=44.31 Aligned_cols=45 Identities=13% Similarity=0.115 Sum_probs=36.3
Q ss_pred CcccccccccccccCceeEEEEecCcce-ehHHHHHHHhhcccCccccCCCCCCCC
Q 007574 98 EGEYHCPVLNKVFTEFTHIVAVKTTGNV-FCFEAIKELNIKTKNWKELLTDEPFTK 152 (597)
Q Consensus 98 ~~~~~CPvt~k~ft~~t~~v~ik~~G~V-~s~eai~~l~~k~k~~~~lv~~~~f~~ 152 (597)
..+..|||+...+.+- ++-+|||+ |+..|+.++ ..||+|-.+++.
T Consensus 22 ~~~~~C~iC~~~~~~~----~~~pCgH~~~C~~C~~~~------~~CP~Cr~~i~~ 67 (74)
T 4ic3_A 22 QEEKLCKICMDRNIAI----VFVPCGHLVTCKQCAEAV------DKCPMCYTVITF 67 (74)
T ss_dssp HHHTBCTTTSSSBCCE----EEETTCCBCCCHHHHTTC------SBCTTTCCBCSE
T ss_pred ccCCCCCCCCCCCCCE----EEcCCCChhHHHHhhhcC------ccCCCcCcCccC
Confidence 3567899999887652 34599999 999999875 489999998865
No 153
>3vk6_A E3 ubiquitin-protein ligase hakai; HYB, phosphotyrosine binding domain; 1.90A {Mus musculus}
Probab=92.11 E-value=0.12 Score=44.63 Aligned_cols=53 Identities=13% Similarity=0.182 Sum_probs=40.3
Q ss_pred ccccccccccCceeEEEEecCcceehHHHHHHHhhcccCccccCCCCCCCCCCeeEe
Q 007574 102 HCPVLNKVFTEFTHIVAVKTTGNVFCFEAIKELNIKTKNWKELLTDEPFTKEDLITI 158 (597)
Q Consensus 102 ~CPvt~k~ft~~t~~v~ik~~G~V~s~eai~~l~~k~k~~~~lv~~~~f~~~DII~L 158 (597)
.||.+...|.-..+ +-||+|||+++|+.....+. .-.||.|.+++.+-+.+.+
T Consensus 3 fC~~C~~Pi~iygR---mIPCkHvFCydCa~~~~~~~-~k~Cp~C~~~V~rVe~~~~ 55 (101)
T 3vk6_A 3 FCDKCGLPIKVYGR---MIPCKHVFCYDCAILHEKKG-DKMCPGCSDPVQRIEQCTR 55 (101)
T ss_dssp BCTTTCSBCSEEEE---EETTCCEEEHHHHHHHHHTT-CCBCTTTCCBCSEEEEEEG
T ss_pred ecCccCCCeEEEee---eccccccHHHHHHHHHHhcc-CCCCcCcCCeeeeeEEecc
Confidence 59999999985544 34999999999998875432 3479999999977665544
No 154
>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=91.95 E-value=0.029 Score=42.83 Aligned_cols=46 Identities=7% Similarity=0.058 Sum_probs=36.3
Q ss_pred CcccccccccccccCceeEEEEecCcceehHHHHHHHhhcccCccccCCCCCCCC
Q 007574 98 EGEYHCPVLNKVFTEFTHIVAVKTTGNVFCFEAIKELNIKTKNWKELLTDEPFTK 152 (597)
Q Consensus 98 ~~~~~CPvt~k~ft~~t~~v~ik~~G~V~s~eai~~l~~k~k~~~~lv~~~~f~~ 152 (597)
...+.|||+...|.+- .+-+|||+|+..++.+ ....||+|..++..
T Consensus 4 ~~~~~C~IC~~~~~~p----~~l~CgH~fC~~Ci~~-----~~~~CP~Cr~~~~~ 49 (56)
T 1bor_A 4 FQFLRCQQCQAEAKCP----KLLPCLHTLCSGCLEA-----SGMQCPICQAPWPL 49 (56)
T ss_dssp CCCSSCSSSCSSCBCC----SCSTTSCCSBTTTCSS-----SSSSCSSCCSSSSC
T ss_pred ccCCCceEeCCccCCe----EEcCCCCcccHHHHcc-----CCCCCCcCCcEeec
Confidence 4568899999999864 3457999999999876 24579999987753
No 155
>3i2d_A E3 SUMO-protein ligase SIZ1; signal transduction, replication, ring E3, PIAS, ubiquitin, UBC9, metal-binding, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=91.92 E-value=0.12 Score=54.44 Aligned_cols=54 Identities=11% Similarity=0.174 Sum_probs=46.5
Q ss_pred cccccccccccCceeEEEEecCcce--ehHHHHHHHhhcccCccccCCCCCCCCCCeeE
Q 007574 101 YHCPVLNKVFTEFTHIVAVKTTGNV--FCFEAIKELNIKTKNWKELLTDEPFTKEDLIT 157 (597)
Q Consensus 101 ~~CPvt~k~ft~~t~~v~ik~~G~V--~s~eai~~l~~k~k~~~~lv~~~~f~~~DII~ 157 (597)
+.||+++..|.--.+ -..|-|+ |..+++-+++.....|+||+|++.+.-+|++.
T Consensus 250 L~CPlS~~ri~~PvR---g~~C~HlQCFDl~sfL~~~~~~~~W~CPIC~k~~~~~dL~I 305 (371)
T 3i2d_A 250 LQCPISYTRMKYPSK---SINCKHLQCFDALWFLHSQLQIPTWQCPVCQIDIALENLAI 305 (371)
T ss_dssp SBCTTTSSBCSSEEE---ETTCCSSCCEEHHHHHHHHHHSCCCBCTTTCCBCCGGGEEE
T ss_pred ecCCCccccccccCc---CCcCCCcceECHHHHHHHhhcCCceeCCCCCcccCHHHeeE
Confidence 689999999986533 3579987 99999999998888999999999999999885
No 156
>2ea5_A Cell growth regulator with ring finger domain protein 1; CGRRF1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=91.62 E-value=0.11 Score=41.46 Aligned_cols=52 Identities=12% Similarity=0.178 Sum_probs=40.1
Q ss_pred CcccccccccccccCceeEEEEecCcce-ehHHHHHHHhhcccCccccCCCCCCCCCCeeEecCC
Q 007574 98 EGEYHCPVLNKVFTEFTHIVAVKTTGNV-FCFEAIKELNIKTKNWKELLTDEPFTKEDLITIQNP 161 (597)
Q Consensus 98 ~~~~~CPvt~k~ft~~t~~v~ik~~G~V-~s~eai~~l~~k~k~~~~lv~~~~f~~~DII~Lqdp 161 (597)
.....|+|+...+.+ +++.||||+ |+++|+..+ ..||+|-.++.. +|.|-.|
T Consensus 13 ~~~~~C~IC~~~~~~----~v~~pCgH~~~C~~C~~~~------~~CP~CR~~i~~--~~~i~~~ 65 (68)
T 2ea5_A 13 ENSKDCVVCQNGTVN----WVLLPCRHTCLCDGCVKYF------QQCPMCRQFVQE--SFALSGP 65 (68)
T ss_dssp CCSSCCSSSSSSCCC----CEETTTTBCCSCTTHHHHC------SSCTTTCCCCCC--EECCCSS
T ss_pred CCCCCCCCcCcCCCC----EEEECCCChhhhHHHHhcC------CCCCCCCcchhc--eEEeecC
Confidence 456789999887654 568999999 999999863 489999998864 5555433
No 157
>4fo9_A E3 SUMO-protein ligase PIAS2; E3 ligase, pinit domain, SP-ring domain, structural GE consortium, SGC; 2.39A {Homo sapiens} PDB: 2asq_B
Probab=91.23 E-value=0.16 Score=53.42 Aligned_cols=55 Identities=22% Similarity=0.243 Sum_probs=46.3
Q ss_pred ccccccccccccCceeEEEEecCcce--ehHHHHHHHhhcccCccccCCCCCCCCCCeeE
Q 007574 100 EYHCPVLNKVFTEFTHIVAVKTTGNV--FCFEAIKELNIKTKNWKELLTDEPFTKEDLIT 157 (597)
Q Consensus 100 ~~~CPvt~k~ft~~t~~v~ik~~G~V--~s~eai~~l~~k~k~~~~lv~~~~f~~~DII~ 157 (597)
...||+++..|.--.+ -..|-|+ |..+++=+++.....|+||+|++.+.-+|++.
T Consensus 215 SL~CPlS~~ri~~P~R---g~~C~HlqCFDl~sfL~~~~~~~~W~CPiC~k~~~~~dL~I 271 (360)
T 4fo9_A 215 SLMCPLGKMRLTIPCR---AVTCTHLQCFDAALYLQMNEKKPTWICPVCDKKAAYESLIL 271 (360)
T ss_dssp ESBCTTTCSBCSSEEE---ETTCCCCCCEEHHHHHHHHHHSCCCBCTTTCSBCCGGGEEE
T ss_pred eeeCCCccceeccCCc---CCCCCCCccCCHHHHHHHHhhCCCeECCCCCcccCHHHeEE
Confidence 3679999999975433 3568888 99999999998888999999999999999885
No 158
>4ic3_A E3 ubiquitin-protein ligase XIAP; ring domain, zinc-finger, E3 ligase; 1.78A {Homo sapiens} PDB: 4ic2_A
Probab=91.07 E-value=0.072 Score=42.97 Aligned_cols=30 Identities=10% Similarity=0.000 Sum_probs=27.6
Q ss_pred ccccCCCCCCCCceecCCCCe-eeHHhHHHH
Q 007574 40 YCCALTFTPFEDPVCTADGSV-FELMSITPY 69 (597)
Q Consensus 40 ~~C~LSl~pl~~PV~t~~G~l-y~ke~Il~~ 69 (597)
..|+|++..+.+||..+-||+ |+..+|..|
T Consensus 25 ~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~ 55 (74)
T 4ic3_A 25 KLCKICMDRNIAIVFVPCGHLVTCKQCAEAV 55 (74)
T ss_dssp TBCTTTSSSBCCEEEETTCCBCCCHHHHTTC
T ss_pred CCCCCCCCCCCCEEEcCCCChhHHHHhhhcC
Confidence 469999999999999999999 999998766
No 159
>2nnz_A Hypothetical protein; beta-barrel, structural genomics, ontario centre for structu proteomics, OCSP, unknown function; NMR {Archaeoglobus fulgidus}
Probab=90.66 E-value=0.44 Score=44.30 Aligned_cols=100 Identities=13% Similarity=0.220 Sum_probs=60.2
Q ss_pred EEEEEeCeeEEEEeCCCCChhhHHHHHHHH--hc--cccCCceEEEeecCcEEEecCCCCCCCCCCccCCCCCCC-cccc
Q 007574 351 VQLHTTHGDLNIELHCDITPRSCENFITLC--ER--GYYNGVAFHRSIRNFMIQGGDPTGTGRGGESIWGKPFKD-EVNS 425 (597)
Q Consensus 351 V~l~T~~G~I~IEL~~d~aP~tv~NFl~L~--~~--g~Y~gt~fhRvi~~f~IQgGdptg~g~gg~si~g~~f~d-E~~~ 425 (597)
++|.-.-..+.++|+.+.||+||+.|+++. +. ..|-+-.++ .+| . .+.- | +.
T Consensus 32 I~i~~~~~~~~a~L~D~~aP~Ta~~f~~~LPl~~~~~~~g~E~y~-~lp---------~------------~l~~~e-n~ 88 (153)
T 2nnz_A 32 LRIRFESAECEVELYEEWAPETVRAIADALPIKSTANRWGDEIYF-TTQ---------V------------AVEKEE-NS 88 (153)
T ss_dssp EEEEETTEEEEECCCTTSCHHHHHHHHHTCSEEEEEEEETTEEEE-CCS---------C------------CCCCSS-CC
T ss_pred EEEEECCEEEEEEEcCCCCHHHHHHHHHhCCcEEEHHhhCCcEEE-ECC---------C------------CCCCCC-CC
Confidence 566666678999999999999999999985 11 112111111 001 0 0111 1 11
Q ss_pred cccCCCccEEEEecCCCCCCCcceEEeccCCCCCCC------CCcEEEEEEcChHHHHHH
Q 007574 426 KLLHSGRGVVSMANSGPHTNGSQFFILYKSATHLNY------KHTVFGGVVGGLTTLAAM 479 (597)
Q Consensus 426 ~l~h~~rG~lsman~g~ntngSqFFItl~~~p~LD~------k~tVFGrVv~G~dvL~~I 479 (597)
-.....|-|+.-..+ ..|-|-+++.|...+ .-.+||+|++|++.|..+
T Consensus 89 -~~~~~~GDI~Yy~pg-----~~LaIFYg~~p~s~~e~~~as~~~~lG~I~~gle~L~~~ 142 (153)
T 2nnz_A 89 -KDVVELGDVAYWIPG-----KAICLFFGKTPISDDKIRPASAVNVIGRIVNSMEGLKGV 142 (153)
T ss_dssp -BCCCCTTEEEEETTT-----TEEEEESSCCTTCTTSCCCCSSEEEEEECCSCCCCGGGC
T ss_pred -cccCCCCeEEEeCCC-----CEEEEEECCccccccccccccccEEEEEEccCHHHHhhC
Confidence 123457888875432 247777887754332 246899999998877665
No 160
>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=88.90 E-value=0.15 Score=38.75 Aligned_cols=31 Identities=10% Similarity=-0.007 Sum_probs=27.5
Q ss_pred CCccccCCCCCCCCceecCCCCeeeHHhHHH
Q 007574 38 PFYCCALTFTPFEDPVCTADGSVFELMSITP 68 (597)
Q Consensus 38 pf~~C~LSl~pl~~PV~t~~G~ly~ke~Il~ 68 (597)
....|+|++..+.+|++.+-||+|+..+|..
T Consensus 5 ~~~~C~IC~~~~~~p~~l~CgH~fC~~Ci~~ 35 (56)
T 1bor_A 5 QFLRCQQCQAEAKCPKLLPCLHTLCSGCLEA 35 (56)
T ss_dssp CCSSCSSSCSSCBCCSCSTTSCCSBTTTCSS
T ss_pred cCCCceEeCCccCCeEEcCCCCcccHHHHcc
Confidence 3556999999999999999999999988765
No 161
>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B
Probab=88.42 E-value=0.43 Score=39.09 Aligned_cols=50 Identities=18% Similarity=0.163 Sum_probs=34.8
Q ss_pred CccccCCCCCCC--CceecC--CCCeeeHHhHHHHHHh-cCCCCCCCCCCCCCCc
Q 007574 39 FYCCALTFTPFE--DPVCTA--DGSVFELMSITPYIRK-YGKHPVTGTPLKLEDL 88 (597)
Q Consensus 39 f~~C~LSl~pl~--~PV~t~--~G~ly~ke~Il~~L~k-~~~~Pvtg~~l~lkdL 88 (597)
-..|+|+++|+. +++..+ -||.|++.+|..++.. ....|+-++++...++
T Consensus 11 ~~~CpICle~~~~~d~~~~p~~CGH~fC~~Cl~~~~~~~~~~CP~CR~~~~~~~~ 65 (78)
T 1e4u_A 11 PVECPLCMEPLEIDDINFFPCTCGYQICRFCWHRIRTDENGLCPACRKPYPEDPA 65 (78)
T ss_dssp CCBCTTTCCBCCTTTTTCCSSTTSCCCCHHHHHHHTTSSCSBCTTTCCBCSSCSS
T ss_pred CCcCCccCccCccccccccccCCCCCcCHHHHHHHHhcCCCCCCCCCCccCCCch
Confidence 457999999995 556654 7999999999988643 2335555555554444
No 162
>4a0k_B E3 ubiquitin-protein ligase RBX1; ligase-DNA-binding protein-DNA complex, DNA-binding protein- complex; HET: DNA 3DR; 5.93A {Mus musculus}
Probab=88.39 E-value=0.088 Score=46.84 Aligned_cols=45 Identities=13% Similarity=0.239 Sum_probs=0.0
Q ss_pred ccccCCCCCCCCce-----------------e-cCCCCeeeHHhHHHHHHhcCCCCCCCCCCC
Q 007574 40 YCCALTFTPFEDPV-----------------C-TADGSVFELMSITPYIRKYGKHPVTGTPLK 84 (597)
Q Consensus 40 ~~C~LSl~pl~~PV-----------------~-t~~G~ly~ke~Il~~L~k~~~~Pvtg~~l~ 84 (597)
+.|+|+++.|.+|. + .+-||+|...+|.+||+.+...|+-+.+..
T Consensus 49 d~CaICl~~~~~~c~~C~~~~~~~~~~~~~v~~~~C~H~FH~~CI~~Wl~~~~~CP~Cr~~~~ 111 (117)
T 4a0k_B 49 DNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNREWE 111 (117)
T ss_dssp ---------------------------------------------------------------
T ss_pred CcCeECChhhcCcChhhhcccccccccccccccCCcCceEcHHHHHHHHHcCCcCCCCCCeee
Confidence 78999999998753 2 356999999999999998777777665543
No 163
>3dpl_R Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} SCOP: g.44.1.1 PDB: 3dqv_R 3rtr_B 4f52_B 1u6g_B 2hye_D* 4a0c_D 4a0l_F* 1ldj_B 1ldk_C 2lgv_A
Probab=88.14 E-value=0.3 Score=42.47 Aligned_cols=68 Identities=10% Similarity=0.117 Sum_probs=45.0
Q ss_pred CCCCCCccccccccccCcccccccccccccCce--------------eEEEEecCcceehHHHHHHHhhcccCccccCCC
Q 007574 82 PLKLEDLIPLTFHKNAEGEYHCPVLNKVFTEFT--------------HIVAVKTTGNVFCFEAIKELNIKTKNWKELLTD 147 (597)
Q Consensus 82 ~l~lkdLi~l~f~kn~~~~~~CPvt~k~ft~~t--------------~~v~ik~~G~V~s~eai~~l~~k~k~~~~lv~~ 147 (597)
.++++.+-.|..-.-....-.|+||...|...- -.+++-+|||+|...||.+.... +..||+|-
T Consensus 19 r~~ik~~~~v~~w~~d~~~d~CaIC~~~~~~~c~~C~~~~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~--~~~CP~Cr 96 (106)
T 3dpl_R 19 RFEVKKWNAVALWAWDIVVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKT--RQVCPLDN 96 (106)
T ss_dssp SEEEEEEEEEEEEEESSCSCCCSSSCSCTTSCCTTHHHHTTCC---CCCEEEETTSCEEEHHHHHHHHTT--CSBCSSSC
T ss_pred ceeEEEEEEeeEeecCCCCCCCccCChhHhCcCchhhccccccCCccceEeecccCcEECHHHHHHHHHc--CCcCcCCC
Confidence 344444444433332344557999988887541 13556799999999999996433 35799999
Q ss_pred CCCC
Q 007574 148 EPFT 151 (597)
Q Consensus 148 ~~f~ 151 (597)
.+|.
T Consensus 97 ~~~~ 100 (106)
T 3dpl_R 97 REWE 100 (106)
T ss_dssp SBCC
T ss_pred Ccce
Confidence 8874
No 164
>2vje_A E3 ubiquitin-protein ligase MDM2; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_A* 2hdp_A
Probab=87.07 E-value=0.54 Score=36.75 Aligned_cols=45 Identities=11% Similarity=0.172 Sum_probs=38.2
Q ss_pred CccccCCCCCCCCceec--CCCCe-eeHHhHHHHHHhcCCCCCCCCCC
Q 007574 39 FYCCALTFTPFEDPVCT--ADGSV-FELMSITPYIRKYGKHPVTGTPL 83 (597)
Q Consensus 39 f~~C~LSl~pl~~PV~t--~~G~l-y~ke~Il~~L~k~~~~Pvtg~~l 83 (597)
-..|.|++..+.++|+. +-||+ |+.+++..|+......|+-++++
T Consensus 8 ~~~C~IC~~~~~~~~~~~~pCgH~~~C~~C~~~~~~~~~~CPiCR~~i 55 (64)
T 2vje_A 8 IEPCVICQGRPKNGCIVHGKTGHLMACFTCAKKLKKRNKPCPVCRQPI 55 (64)
T ss_dssp GSCCTTTSSSCSCEEEEETTEEEEEECHHHHHHHHHTTCCCTTTCCCC
T ss_pred cCCCCcCCCCCCCEEEECCCCCChhhHHHHHHHHHHcCCcCCCcCcch
Confidence 45699999999999986 88999 89999999998766777776655
No 165
>3t6p_A Baculoviral IAP repeat-containing protein 2; ring, BIR, CARD, UBA, apoptosis, ubiquitin ligase, SMAC/ ubiquitin, caspase, IAP family, SMAC mimetic; 1.90A {Homo sapiens} PDB: 1qbh_A 2l9m_A 3eb5_A 3eb6_A 4auq_B
Probab=86.52 E-value=0.2 Score=52.52 Aligned_cols=44 Identities=20% Similarity=0.236 Sum_probs=35.9
Q ss_pred cccccccccccccCceeEEEEecCcce-ehHHHHHHHhhcccCccccCCCCCCCC
Q 007574 99 GEYHCPVLNKVFTEFTHIVAVKTTGNV-FCFEAIKELNIKTKNWKELLTDEPFTK 152 (597)
Q Consensus 99 ~~~~CPvt~k~ft~~t~~v~ik~~G~V-~s~eai~~l~~k~k~~~~lv~~~~f~~ 152 (597)
.+..||||...+.+ .| +-+|||+ ||..|+..+ ..||+|-.+++.
T Consensus 294 ~~~~C~IC~~~~~~---~v-~lpCgH~~fC~~C~~~~------~~CP~CR~~i~~ 338 (345)
T 3t6p_A 294 EERTCKVCMDKEVS---VV-FIPCGHLVVCQECAPSL------RKCPICRGIIKG 338 (345)
T ss_dssp TTCBCTTTSSSBCC---EE-EETTCCEEECTTTGGGC------SBCTTTCCBCCE
T ss_pred CCCCCCccCCcCCc---eE-EcCCCChhHhHHHHhcC------CcCCCCCCCccC
Confidence 45789999998864 23 3499999 999999875 489999998864
No 166
>2d8s_A Cellular modulator of immune recognition; C-MIR, march8, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=86.18 E-value=1.7 Score=35.69 Aligned_cols=48 Identities=8% Similarity=0.095 Sum_probs=35.1
Q ss_pred CCccccCCCCCCC--CceecCC-----CCeeeHHhHHHHHHhcC--CCCCCCCCCCC
Q 007574 38 PFYCCALTFTPFE--DPVCTAD-----GSVFELMSITPYIRKYG--KHPVTGTPLKL 85 (597)
Q Consensus 38 pf~~C~LSl~pl~--~PV~t~~-----G~ly~ke~Il~~L~k~~--~~Pvtg~~l~l 85 (597)
.-..|+|++..+. +|++.|- +|.|-..+|.+||...+ ..|+-+.++.+
T Consensus 14 ~~~~C~IC~~~~~~~~~l~~pC~C~Gs~h~fH~~Cl~~Wl~~~~~~~CplCr~~~~~ 70 (80)
T 2d8s_A 14 SQDICRICHCEGDDESPLITPCHCTGSLHFVHQACLQQWIKSSDTRCCELCKYEFIM 70 (80)
T ss_dssp TSCCCSSSCCCCCSSSCEECSSSCCSSSCCEETTHHHHHHHHHCCSBCSSSCCBCCC
T ss_pred CCCCCeEcCccccCCCeeEeccccCCcCCeeCHHHHHHHHhhCCCCCCCCCCCeeec
Confidence 4567999998874 5776553 49999999999998764 45555554443
No 167
>3t6p_A Baculoviral IAP repeat-containing protein 2; ring, BIR, CARD, UBA, apoptosis, ubiquitin ligase, SMAC/ ubiquitin, caspase, IAP family, SMAC mimetic; 1.90A {Homo sapiens} PDB: 1qbh_A 2l9m_A 3eb5_A 3eb6_A 4auq_B
Probab=86.16 E-value=0.2 Score=52.61 Aligned_cols=31 Identities=10% Similarity=0.010 Sum_probs=27.7
Q ss_pred CccccCCCCCCCCceecCCCCe-eeHHhHHHH
Q 007574 39 FYCCALTFTPFEDPVCTADGSV-FELMSITPY 69 (597)
Q Consensus 39 f~~C~LSl~pl~~PV~t~~G~l-y~ke~Il~~ 69 (597)
-..|+||+..+.+||..+-||+ ||..||..|
T Consensus 295 ~~~C~IC~~~~~~~v~lpCgH~~fC~~C~~~~ 326 (345)
T 3t6p_A 295 ERTCKVCMDKEVSVVFIPCGHLVVCQECAPSL 326 (345)
T ss_dssp TCBCTTTSSSBCCEEEETTCCEEECTTTGGGC
T ss_pred CCCCCccCCcCCceEEcCCCChhHhHHHHhcC
Confidence 3579999999999999999999 999998744
No 168
>2kkx_A Uncharacterized protein ECS2156; methods development, U-box domain, structural genomics, PSI- protein structure initiative; NMR {Escherichia coli} PDB: 2kky_A
Probab=85.19 E-value=0.73 Score=39.66 Aligned_cols=54 Identities=17% Similarity=0.321 Sum_probs=44.4
Q ss_pred CCccccCCCCCCCCceec--CC----CCeeeHHhHHHHHHhcCCCCCCCCCCCCCCcccc
Q 007574 38 PFYCCALTFTPFEDPVCT--AD----GSVFELMSITPYIRKYGKHPVTGTPLKLEDLIPL 91 (597)
Q Consensus 38 pf~~C~LSl~pl~~PV~t--~~----G~ly~ke~Il~~L~k~~~~Pvtg~~l~lkdLi~l 91 (597)
.+-.|||+|..-+.=|.- .. =.|||+.++.+-+.....+|++++|++...+|.-
T Consensus 26 e~l~CPITL~~PE~GVFvkNs~~S~VCsLyD~~Al~~Lv~~~~~HPLSREpit~sMIv~~ 85 (102)
T 2kkx_A 26 EAIQCPITLEQPEKGIFVKNSDGSDVCTLFDAAAFSRLVGEGLPHPLTREPITASIIVKH 85 (102)
T ss_dssp GGGCBTTTTBCCSEEEEEEETTTTSEEEEEEHHHHHHHHHHTCCCTTTCCCCCTTTEECT
T ss_pred HHcCCCeEEeeCCcceEEecCCCCccceecCHHHHHHHHhcCCCCCCccCCCCHhhEech
Confidence 366799999988876641 12 3599999999999999999999999999888653
No 169
>2ecg_A Baculoviral IAP repeat-containing protein 4; BIRC4, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=84.49 E-value=1 Score=36.06 Aligned_cols=29 Identities=10% Similarity=-0.035 Sum_probs=26.2
Q ss_pred CccccCCCCCCCCceecCCCCe-eeHHhHH
Q 007574 39 FYCCALTFTPFEDPVCTADGSV-FELMSIT 67 (597)
Q Consensus 39 f~~C~LSl~pl~~PV~t~~G~l-y~ke~Il 67 (597)
...|+|++..+.+||..+-||+ |+..+|.
T Consensus 25 ~~~C~IC~~~~~~~~~~pCgH~~~C~~C~~ 54 (75)
T 2ecg_A 25 EKLCKICMDRNIAIVFVPCGHLVTCKQCAE 54 (75)
T ss_dssp HHSCSSSCSSCCCBCCSSSCCCCBCHHHHH
T ss_pred CCCCCcCCCCCCCEEEecCCCHHHHHHHhh
Confidence 3469999999999999999999 9999983
No 170
>2vje_B MDM4 protein; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_B*
Probab=84.28 E-value=0.78 Score=35.70 Aligned_cols=45 Identities=11% Similarity=0.093 Sum_probs=37.0
Q ss_pred CccccCCCCCCCCceec--CCCCe-eeHHhHHHHHHhcCCCCCCCCCC
Q 007574 39 FYCCALTFTPFEDPVCT--ADGSV-FELMSITPYIRKYGKHPVTGTPL 83 (597)
Q Consensus 39 f~~C~LSl~pl~~PV~t--~~G~l-y~ke~Il~~L~k~~~~Pvtg~~l 83 (597)
-..|.|++....++++. +-||+ |+.+++..+....+..|+-++++
T Consensus 7 ~~~C~IC~~~~~~~~~~~~pCgH~~~C~~C~~~~~~~~~~CPiCR~~i 54 (63)
T 2vje_B 7 LKPCSLCEKRPRDGNIIHGRTGHLVTCFHCARRLKKAGASCPICKKEI 54 (63)
T ss_dssp GSBCTTTSSSBSCEEEEETTEEEEEECHHHHHHHHHTTCBCTTTCCBC
T ss_pred CCCCcccCCcCCCeEEEecCCCCHhHHHHHHHHHHHhCCcCCCcCchh
Confidence 34699999999999876 88998 99999999987666667666555
No 171
>2d8s_A Cellular modulator of immune recognition; C-MIR, march8, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=83.17 E-value=0.94 Score=37.26 Aligned_cols=55 Identities=7% Similarity=0.029 Sum_probs=42.3
Q ss_pred CcccccccccccccCceeEEEEecCc-----ceehHHHHHHHhhcccCccccCCCCCCCCCC
Q 007574 98 EGEYHCPVLNKVFTEFTHIVAVKTTG-----NVFCFEAIKELNIKTKNWKELLTDEPFTKED 154 (597)
Q Consensus 98 ~~~~~CPvt~k~ft~~t~~v~ik~~G-----~V~s~eai~~l~~k~k~~~~lv~~~~f~~~D 154 (597)
...-.|+|+...|.....+ +.||+ |.|-.+||++-........||+|..+|.-+.
T Consensus 13 ~~~~~C~IC~~~~~~~~~l--~~pC~C~Gs~h~fH~~Cl~~Wl~~~~~~~CplCr~~~~~~~ 72 (80)
T 2d8s_A 13 SSQDICRICHCEGDDESPL--ITPCHCTGSLHFVHQACLQQWIKSSDTRCCELCKYEFIMET 72 (80)
T ss_dssp TTSCCCSSSCCCCCSSSCE--ECSSSCCSSSCCEETTHHHHHHHHHCCSBCSSSCCBCCCCC
T ss_pred CCCCCCeEcCccccCCCee--EeccccCCcCCeeCHHHHHHHHhhCCCCCCCCCCCeeecCc
Confidence 4557899999999765554 57886 9999999999655444468999999886543
No 172
>3i2d_A E3 SUMO-protein ligase SIZ1; signal transduction, replication, ring E3, PIAS, ubiquitin, UBC9, metal-binding, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=78.95 E-value=1.5 Score=46.22 Aligned_cols=49 Identities=14% Similarity=0.252 Sum_probs=38.9
Q ss_pred ccccCCCCCCCCceecC-CCCe--eeHHhHHHHHHhcCCCCCCCCCCCCCCccccccccccCcccccccccccccCc
Q 007574 40 YCCALTFTPFEDPVCTA-DGSV--FELMSITPYIRKYGKHPVTGTPLKLEDLIPLTFHKNAEGEYHCPVLNKVFTEF 113 (597)
Q Consensus 40 ~~C~LSl~pl~~PV~t~-~G~l--y~ke~Il~~L~k~~~~Pvtg~~l~lkdLi~l~f~kn~~~~~~CPvt~k~ft~~ 113 (597)
..||||+.+|..||=.. .-|+ ||++++|.+..+ ...|.||||.+.+.-.
T Consensus 250 L~CPlS~~ri~~PvRg~~C~HlQCFDl~sfL~~~~~-------------------------~~~W~CPIC~k~~~~~ 301 (371)
T 3i2d_A 250 LQCPISYTRMKYPSKSINCKHLQCFDALWFLHSQLQ-------------------------IPTWQCPVCQIDIALE 301 (371)
T ss_dssp SBCTTTSSBCSSEEEETTCCSSCCEEHHHHHHHHHH-------------------------SCCCBCTTTCCBCCGG
T ss_pred ecCCCccccccccCcCCcCCCcceECHHHHHHHhhc-------------------------CCceeCCCCCcccCHH
Confidence 45999999999999633 3565 999999998653 3679999999887643
No 173
>1wim_A KIAA0161 protein; ring finger domain, UBCM4-interacting protein 4, UIP4, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=77.34 E-value=1.5 Score=36.58 Aligned_cols=34 Identities=15% Similarity=0.255 Sum_probs=29.5
Q ss_pred CccccCCCCCCCCceec---CCCCeeeHHhHHHHHHh
Q 007574 39 FYCCALTFTPFEDPVCT---ADGSVFELMSITPYIRK 72 (597)
Q Consensus 39 f~~C~LSl~pl~~PV~t---~~G~ly~ke~Il~~L~k 72 (597)
...|+|++..+..|+.. +-||.|++++|..|+..
T Consensus 5 ~~~C~IC~~~~~~~~~~~l~~CgH~FC~~Cl~~~~~~ 41 (94)
T 1wim_A 5 SSGCKLCLGEYPVEQMTTIAQCQCIFCTLCLKQYVEL 41 (94)
T ss_dssp BCCCSSSCCCCBGGGEEEETTTTEEEEHHHHHHHHHH
T ss_pred CcCCcccCcccccccceEcCCCCCcccHHHHHHHHHH
Confidence 45699999999999763 57999999999999974
No 174
>2yho_A E3 ubiquitin-protein ligase mylip; ligase, E2 ligase-E3 ligase complex, ring zinc-finger, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 2yhn_A
Probab=73.51 E-value=0.95 Score=36.91 Aligned_cols=30 Identities=7% Similarity=-0.010 Sum_probs=26.9
Q ss_pred ccccCCCCCCCCceecCCCCe-eeHHhHHHH
Q 007574 40 YCCALTFTPFEDPVCTADGSV-FELMSITPY 69 (597)
Q Consensus 40 ~~C~LSl~pl~~PV~t~~G~l-y~ke~Il~~ 69 (597)
..|+|++..+.+||..+-||+ |+..++..+
T Consensus 19 ~~C~IC~~~~~~~v~~pCgH~~~C~~C~~~~ 49 (79)
T 2yho_A 19 MLCMVCCEEEINSTFCPCGHTVCCESCAAQL 49 (79)
T ss_dssp TBCTTTSSSBCCEEEETTCBCCBCHHHHTTC
T ss_pred CEeEEeCcccCcEEEECCCCHHHHHHHHHhc
Confidence 469999999999999999999 999998644
No 175
>3m62_A Ubiquitin conjugation factor E4; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae} PDB: 3m63_A* 2qiz_A 2qj0_A
Probab=72.53 E-value=2.9 Score=49.17 Aligned_cols=53 Identities=13% Similarity=0.212 Sum_probs=44.4
Q ss_pred cccccccccccccCceeEEEEecCc-ceehHHHHHHHhhcccCccccCCCCCCCCCCeeE
Q 007574 99 GEYHCPVLNKVFTEFTHIVAVKTTG-NVFCFEAIKELNIKTKNWKELLTDEPFTKEDLIT 157 (597)
Q Consensus 99 ~~~~CPvt~k~ft~~t~~v~ik~~G-~V~s~eai~~l~~k~k~~~~lv~~~~f~~~DII~ 157 (597)
.+|+||++...|.+- ++-++| ..|-..+|++--.. +-.||.+..+++..|+|+
T Consensus 890 ~~F~cPIs~~lM~DP----VilpsG~~TydR~~I~~wl~~--~~tdP~Tr~~L~~~~liP 943 (968)
T 3m62_A 890 DEFLDPLMYTIMKDP----VILPASKMNIDRSTIKAHLLS--DSTDPFNRMPLKLEDVTP 943 (968)
T ss_dssp GGGBCTTTCSBCSSE----EECTTTCCEEEHHHHHHHHTT--CCBCTTTCCBCCGGGCEE
T ss_pred HHhCCcchhhHHhCC----eEcCCCCEEECHHHHHHHHhc--CCCCCCCCCCCCcccccc
Confidence 579999999999987 456887 68999999996443 347999999999999885
No 176
>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=72.52 E-value=3.5 Score=33.47 Aligned_cols=50 Identities=6% Similarity=0.062 Sum_probs=37.9
Q ss_pred cccccccccccccCceeEEEEecCcceehHHHHHHHhhcccCccccCCCCCCC
Q 007574 99 GEYHCPVLNKVFTEFTHIVAVKTTGNVFCFEAIKELNIKTKNWKELLTDEPFT 151 (597)
Q Consensus 99 ~~~~CPvt~k~ft~~t~~v~ik~~G~V~s~eai~~l~~k~k~~~~lv~~~~f~ 151 (597)
.--.|+|++..|...... ..|||.|-..||.+.-.....-.||+|..++.
T Consensus 14 ~i~~C~IC~~~i~~g~~C---~~C~h~fH~~Ci~kWl~~~~~~~CP~Cr~~w~ 63 (74)
T 2ct0_A 14 AVKICNICHSLLIQGQSC---ETCGIRMHLPCVAKYFQSNAEPRCPHCNDYWP 63 (74)
T ss_dssp SSCBCSSSCCBCSSSEEC---SSSCCEECHHHHHHHSTTCSSCCCTTTCSCCC
T ss_pred CCCcCcchhhHcccCCcc---CCCCchhhHHHHHHHHHhcCCCCCCCCcCcCC
Confidence 445799999999865332 38999999999998643332357999998876
No 177
>4fo9_A E3 SUMO-protein ligase PIAS2; E3 ligase, pinit domain, SP-ring domain, structural GE consortium, SGC; 2.39A {Homo sapiens} PDB: 2asq_B
Probab=71.42 E-value=3.1 Score=43.71 Aligned_cols=47 Identities=19% Similarity=0.259 Sum_probs=37.6
Q ss_pred cccCCCCCCCCceecC-CCCe--eeHHhHHHHHHhcCCCCCCCCCCCCCCccccccccccCcccccccccccccC
Q 007574 41 CCALTFTPFEDPVCTA-DGSV--FELMSITPYIRKYGKHPVTGTPLKLEDLIPLTFHKNAEGEYHCPVLNKVFTE 112 (597)
Q Consensus 41 ~C~LSl~pl~~PV~t~-~G~l--y~ke~Il~~L~k~~~~Pvtg~~l~lkdLi~l~f~kn~~~~~~CPvt~k~ft~ 112 (597)
.||||+.+|..|+=.. --|+ ||++++|....+ ...|.||||.+.+.-
T Consensus 217 ~CPlS~~ri~~P~Rg~~C~HlqCFDl~sfL~~~~~-------------------------~~~W~CPiC~k~~~~ 266 (360)
T 4fo9_A 217 MCPLGKMRLTIPCRAVTCTHLQCFDAALYLQMNEK-------------------------KPTWICPVCDKKAAY 266 (360)
T ss_dssp BCTTTCSBCSSEEEETTCCCCCCEEHHHHHHHHHH-------------------------SCCCBCTTTCSBCCG
T ss_pred eCCCccceeccCCcCCCCCCCccCCHHHHHHHHhh-------------------------CCCeECCCCCcccCH
Confidence 5999999999999633 2555 999999998764 246999999988764
No 178
>4a0k_B E3 ubiquitin-protein ligase RBX1; ligase-DNA-binding protein-DNA complex, DNA-binding protein- complex; HET: DNA 3DR; 5.93A {Mus musculus}
Probab=68.92 E-value=0.65 Score=41.20 Aligned_cols=53 Identities=13% Similarity=0.117 Sum_probs=1.3
Q ss_pred CcccccccccccccCce--------------eEEEEecCcceehHHHHHHHhhcccCccccCCCCCCCC
Q 007574 98 EGEYHCPVLNKVFTEFT--------------HIVAVKTTGNVFCFEAIKELNIKTKNWKELLTDEPFTK 152 (597)
Q Consensus 98 ~~~~~CPvt~k~ft~~t--------------~~v~ik~~G~V~s~eai~~l~~k~k~~~~lv~~~~f~~ 152 (597)
...-.|+||...|.+.. -.+++-+|||+|...||.+-... +..||+|-.+|.-
T Consensus 46 ~~~d~CaICl~~~~~~c~~C~~~~~~~~~~~~~v~~~~C~H~FH~~CI~~Wl~~--~~~CP~Cr~~~~~ 112 (117)
T 4a0k_B 46 IVVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKT--RQVCPLDNREWEF 112 (117)
T ss_dssp CCC------------------------------------------------------------------
T ss_pred CCCCcCeECChhhcCcChhhhcccccccccccccccCCcCceEcHHHHHHHHHc--CCcCCCCCCeeee
Confidence 34457999998886521 12334589999999999985332 3479999988753
No 179
>1vd4_A Transcription initiation factor IIE, alpha subunit; zinc finger; NMR {Homo sapiens} SCOP: g.41.3.1
Probab=61.55 E-value=2.4 Score=32.04 Aligned_cols=42 Identities=17% Similarity=0.423 Sum_probs=28.8
Q ss_pred CcccccccccccccCceeEEEEecCcceehHHHHHHHhhcccCccccCCCCCCCCCC
Q 007574 98 EGEYHCPVLNKVFTEFTHIVAVKTTGNVFCFEAIKELNIKTKNWKELLTDEPFTKED 154 (597)
Q Consensus 98 ~~~~~CPvt~k~ft~~t~~v~ik~~G~V~s~eai~~l~~k~k~~~~lv~~~~f~~~D 154 (597)
...|.|++|++.|+... .+..+-...+.++|.+|+..|...+
T Consensus 12 ~k~~~C~~C~k~F~~~~---------------~l~~~H~~~k~~~C~~C~k~f~~~~ 53 (62)
T 1vd4_A 12 RASFKCPVCSSTFTDLE---------------ANQLFDPMTGTFRCTFCHTEVEEDE 53 (62)
T ss_dssp SSEEECSSSCCEEEHHH---------------HHHHEETTTTEEBCSSSCCBCEECT
T ss_pred CCCccCCCCCchhccHH---------------HhHhhcCCCCCEECCCCCCccccCc
Confidence 45699999999997432 2222223346689999999997654
No 180
>2ea5_A Cell growth regulator with ring finger domain protein 1; CGRRF1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=54.05 E-value=16 Score=28.64 Aligned_cols=31 Identities=6% Similarity=-0.193 Sum_probs=28.0
Q ss_pred CCCccccCCCCCCCCceecCCCCe-eeHHhHH
Q 007574 37 LPFYCCALTFTPFEDPVCTADGSV-FELMSIT 67 (597)
Q Consensus 37 lpf~~C~LSl~pl~~PV~t~~G~l-y~ke~Il 67 (597)
.....|.|++....++|..|-||+ |+..++.
T Consensus 13 ~~~~~C~IC~~~~~~~v~~pCgH~~~C~~C~~ 44 (68)
T 2ea5_A 13 ENSKDCVVCQNGTVNWVLLPCRHTCLCDGCVK 44 (68)
T ss_dssp CCSSCCSSSSSSCCCCEETTTTBCCSCTTHHH
T ss_pred CCCCCCCCcCcCCCCEEEECCCChhhhHHHHh
Confidence 346679999999999999999999 9999987
No 181
>6rxn_A Rubredoxin; electron transfer(iron-sulfur protein); 1.50A {Desulfovibrio desulfuricans} SCOP: g.41.5.1
Probab=53.04 E-value=3.6 Score=30.51 Aligned_cols=13 Identities=8% Similarity=0.174 Sum_probs=10.5
Q ss_pred cccCccccCCCCC
Q 007574 137 KTKNWKELLTDEP 149 (597)
Q Consensus 137 k~k~~~~lv~~~~ 149 (597)
.+..|+||+|+.+
T Consensus 27 lP~dw~CP~Cg~~ 39 (46)
T 6rxn_A 27 LPDDWCCPVCGVS 39 (46)
T ss_dssp SCTTCBCTTTCCB
T ss_pred CCCCCcCcCCCCc
Confidence 3567999999975
No 182
>3nw0_A Non-structural maintenance of chromosomes element homolog; E3 ligase, Zn, metal binding protein; 2.92A {Homo sapiens}
Probab=52.39 E-value=9.6 Score=37.61 Aligned_cols=58 Identities=9% Similarity=0.136 Sum_probs=42.8
Q ss_pred ccccccccccccCceeEEEEecCcceehHHHHHHHhhcccCccccCCCCCCCCCCeeEecCC
Q 007574 100 EYHCPVLNKVFTEFTHIVAVKTTGNVFCFEAIKELNIKTKNWKELLTDEPFTKEDLITIQNP 161 (597)
Q Consensus 100 ~~~CPvt~k~ft~~t~~v~ik~~G~V~s~eai~~l~~k~k~~~~lv~~~~f~~~DII~Lqdp 161 (597)
-..|.+|+...+....+ .+|++.|-..|+.+.......-.||.|+.++.-+ +..+.+|
T Consensus 180 i~~C~iC~~iv~~g~~C---~~C~~~~H~~C~~~~~~~~~~~~CP~C~~~W~~~-~~~~~~~ 237 (238)
T 3nw0_A 180 VKICNICHSLLIQGQSC---ETCGIRMHLPCVAKYFQSNAEPRCPHCNDYWPHE-IPKVFDP 237 (238)
T ss_dssp CCBCTTTCSBCSSCEEC---SSSCCEECHHHHHHHTTTCSSCBCTTTCCBCCSC-CCCCCCC
T ss_pred CCcCcchhhHHhCCccc---CccChHHHHHHHHHHHHhCCCCCCCCCCCCCCCC-CCCCCCC
Confidence 34699999999865332 2499999999999975444456899999998765 4445544
No 183
>2xjy_A Rhombotin-2; oncoprotein, T-cell leukemia, proto-oncogene, transcription, developmental protein; 2.40A {Homo sapiens} PDB: 2xjz_A
Probab=51.14 E-value=18 Score=31.44 Aligned_cols=91 Identities=12% Similarity=0.158 Sum_probs=58.9
Q ss_pred CccccCCCCCCC---CceecCCCCeeeHHhHHHHHHhcCCCCCCCCCCCCCC-ccc---cccccccCccccccccccccc
Q 007574 39 FYCCALTFTPFE---DPVCTADGSVFELMSITPYIRKYGKHPVTGTPLKLED-LIP---LTFHKNAEGEYHCPVLNKVFT 111 (597)
Q Consensus 39 f~~C~LSl~pl~---~PV~t~~G~ly~ke~Il~~L~k~~~~Pvtg~~l~lkd-Li~---l~f~kn~~~~~~CPvt~k~ft 111 (597)
-+.|..+..||. .++...+|.+|++..-..-+...+....-++++...+ ++. ..|+ ..-|.|-.+.+.|.
T Consensus 29 CF~C~~C~~~L~~~~~~~~~~~g~~yC~~~y~~~~~~~~~C~~C~~~I~~~e~~~~a~~~~~H---~~CF~C~~C~~~L~ 105 (131)
T 2xjy_A 29 CLSCDLCGCRLGEVGRRLYYKLGRKLCRRDYLRLFGQDGLCASCDKRIRAYEMTMRVKDKVYH---LECFKCAACQKHFC 105 (131)
T ss_dssp TCBCTTTCCBCSSTTCCEEEETTEEECHHHHHHHHCCCEECTTTCCEECTTSEEEEETTEEEE---GGGCBCTTTCCBCC
T ss_pred HcccCcCCCccccCCCeEEEECCEEeecCchhhhCCCccChhhcCCccCccceeEeeCCceEC---ccCcccCCCCCCCC
Confidence 356888888985 4778899999998876665432123455555555433 221 1122 23467999999996
Q ss_pred CceeEEEEecCcceehHHHHHHH
Q 007574 112 EFTHIVAVKTTGNVFCFEAIKEL 134 (597)
Q Consensus 112 ~~t~~v~ik~~G~V~s~eai~~l 134 (597)
....++. . -|.+|+..++.++
T Consensus 106 ~g~~f~~-~-~~~~~C~~c~~~~ 126 (131)
T 2xjy_A 106 VGDRYLL-I-NSDIVCEQDIYEW 126 (131)
T ss_dssp TTCEEEE-E-TTEEEEGGGHHHH
T ss_pred CCCEEEE-E-CCEEEcHHHHHHH
Confidence 5555543 3 4899998888775
No 184
>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=50.19 E-value=23 Score=28.57 Aligned_cols=47 Identities=11% Similarity=0.164 Sum_probs=36.1
Q ss_pred CCccccCCCCCCCCceecC-CCCeeeHHhHHHHHHhc--CCCCCCCCCCC
Q 007574 38 PFYCCALTFTPFEDPVCTA-DGSVFELMSITPYIRKY--GKHPVTGTPLK 84 (597)
Q Consensus 38 pf~~C~LSl~pl~~PV~t~-~G~ly~ke~Il~~L~k~--~~~Pvtg~~l~ 84 (597)
.-..|+|+...+..=+.+. -|+.|-..+|..||+.. .+.|+-+.+..
T Consensus 14 ~i~~C~IC~~~i~~g~~C~~C~h~fH~~Ci~kWl~~~~~~~CP~Cr~~w~ 63 (74)
T 2ct0_A 14 AVKICNICHSLLIQGQSCETCGIRMHLPCVAKYFQSNAEPRCPHCNDYWP 63 (74)
T ss_dssp SSCBCSSSCCBCSSSEECSSSCCEECHHHHHHHSTTCSSCCCTTTCSCCC
T ss_pred CCCcCcchhhHcccCCccCCCCchhhHHHHHHHHHhcCCCCCCCCcCcCC
Confidence 3567999999997544343 49999999999999877 56787665543
No 185
>1zx8_A Hypothetical protein TM1367; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: 1PE; 1.90A {Thermotoga maritima} SCOP: b.62.1.3 PDB: 2ka0_A
Probab=48.20 E-value=71 Score=28.82 Aligned_cols=99 Identities=17% Similarity=0.145 Sum_probs=56.2
Q ss_pred EEEEEeCeeEEEEeCCCCChhhHHHHHHHH----hccccCCceEEEeecCcEEEecCCCCCCCCCCccCCCCCCCccccc
Q 007574 351 VQLHTTHGDLNIELHCDITPRSCENFITLC----ERGYYNGVAFHRSIRNFMIQGGDPTGTGRGGESIWGKPFKDEVNSK 426 (597)
Q Consensus 351 V~l~T~~G~I~IEL~~d~aP~tv~NFl~L~----~~g~Y~gt~fhRvi~~f~IQgGdptg~g~gg~si~g~~f~dE~~~~ 426 (597)
|.+-.....+..+|+. .|.|++.|+++. .-..|. ..++=.+|-.+ ++ +| +..
T Consensus 15 ~~~~~~~~~v~a~L~D--np~Ta~~~~~~LPl~~~~~~~g-~E~y~~~p~~l-----~~---------------~e-~~~ 70 (136)
T 1zx8_A 15 VELLFESGKCVIDLNE--EYEVVKLLKEKIPFESVVNTWG-EEIYFSTPVNV-----QK---------------ME-NPR 70 (136)
T ss_dssp EEEECSSCEEEEEEET--TSHHHHHHHHHCSEEEECEESS-SEEEEECSCCC-----CC---------------CS-SEE
T ss_pred EEEeeCCcEEEEEEcC--CHHHHHHHHHHCCcEEEHHHhC-CcEEEECCccC-----CC---------------CC-CCC
Confidence 3344455679999964 488999999886 112243 33332223211 00 01 111
Q ss_pred ccCCCccEEEEecCCCCCCCcceEEeccCCCCCCC------CCcEEEEEEcChHHHHHH
Q 007574 427 LLHSGRGVVSMANSGPHTNGSQFFILYKSATHLNY------KHTVFGGVVGGLTTLAAM 479 (597)
Q Consensus 427 l~h~~rG~lsman~g~ntngSqFFItl~~~p~LD~------k~tVFGrVv~G~dvL~~I 479 (597)
.-...|-|+.-.. +.-|-|-+++.|...+ .-.+||||.+|++.|..+
T Consensus 71 -~~~~~GDIaYw~p-----gg~LaIFyg~~p~s~~e~~~a~~v~~lGrI~~~l~~l~~v 123 (136)
T 1zx8_A 71 -EVVEIGDVGYWPP-----GKALCLFFGKTPMSDDKIQPASAVNVIGKIVEGLEDLKKI 123 (136)
T ss_dssp -SSBCTTEEEEEGG-----GTEEEEESSCCTTCSSSBCCSSCEEEEEEEEECGGGGGGC
T ss_pred -ccCCCCcEEEeCC-----CCEEEEEeCCCccccCccccCcCcEEEEEEccCHHHHhhC
Confidence 1124677776443 2346777777764443 256899999998877665
No 186
>2jtn_A LIM domain-binding protein 1, LIM/homeobox protein LHX3; intramolecular (fusion) protein-protein complex, protein binding/transcription complex; NMR {Mus musculus}
Probab=47.57 E-value=53 Score=30.29 Aligned_cols=88 Identities=11% Similarity=0.266 Sum_probs=57.0
Q ss_pred ccccCCCCCCCCceecCCCCeeeHHhHHHHHHhcC-CCCCCCCCCCCCCcc-c---cccccccCcccccccccccccCce
Q 007574 40 YCCALTFTPFEDPVCTADGSVFELMSITPYIRKYG-KHPVTGTPLKLEDLI-P---LTFHKNAEGEYHCPVLNKVFTEFT 114 (597)
Q Consensus 40 ~~C~LSl~pl~~PV~t~~G~ly~ke~Il~~L~k~~-~~Pvtg~~l~lkdLi-~---l~f~kn~~~~~~CPvt~k~ft~~t 114 (597)
+.|..+..||..-....+|.+|++..-. +.++ ....-++++...+++ . ..|+. .-|.|-.+.+.|....
T Consensus 88 F~C~~C~~~L~~~~f~~~g~~yC~~~y~---~~f~~kC~~C~~~I~~~~~v~~a~~~~~H~---~CF~C~~C~~~L~~g~ 161 (182)
T 2jtn_A 88 LKCSDCHVPLAERCFSRGESVYCKDDFF---KRFGTKCAACQLGIPPTQVVRRAQDFVYHL---HCFACVVCKRQLATGD 161 (182)
T ss_dssp TSCTTTCCCCSSCCEEETTEEECHHHHH---HTTSCCCTTTCCCCCSSCCCCEETTEECCT---TTCCCTTTCCCCCTTC
T ss_pred CccCCCCCccCCCceeECCEeeecCccc---cccccccccCCCccCCCceEEecCCCCEEe---CCCcCCCCCCCCCCCC
Confidence 4588888888764446789999977644 3333 234445555544432 1 12232 3477999999998655
Q ss_pred eEEEEecCcceehHHHHHHH
Q 007574 115 HIVAVKTTGNVFCFEAIKEL 134 (597)
Q Consensus 115 ~~v~ik~~G~V~s~eai~~l 134 (597)
.+. +..-|.+|+..++.++
T Consensus 162 ~f~-~~~~g~~yC~~cy~~~ 180 (182)
T 2jtn_A 162 EFY-LMEDSRLVCKADYETA 180 (182)
T ss_dssp EEE-ECTTSCEECHHHHHHH
T ss_pred ceE-EccCCEEECHHHHHHh
Confidence 554 3456899999999876
No 187
>2rgt_A Fusion of LIM/homeobox protein LHX3, linker, INSU enhancer protein ISL-1; protein-protein complex, LIM domain, Zn finger, activator, D binding; 2.05A {Mus musculus} PDB: 3mmk_A
Probab=44.35 E-value=59 Score=29.59 Aligned_cols=91 Identities=10% Similarity=0.182 Sum_probs=60.0
Q ss_pred CccccCCCCCCCCceecCCCCeeeHHhHHHHHHhcCCCCCCCCCCCCCCcc-c---cccccccCcccccccccccccCce
Q 007574 39 FYCCALTFTPFEDPVCTADGSVFELMSITPYIRKYGKHPVTGTPLKLEDLI-P---LTFHKNAEGEYHCPVLNKVFTEFT 114 (597)
Q Consensus 39 f~~C~LSl~pl~~PV~t~~G~ly~ke~Il~~L~k~~~~Pvtg~~l~lkdLi-~---l~f~kn~~~~~~CPvt~k~ft~~t 114 (597)
-+.|..+..||..-....+|.+|++..-..-+. .....-++++...+++ . ..|+. .-|.|-.+.+.|....
T Consensus 33 CF~C~~C~~~L~~~~f~~~g~~yC~~~y~~~f~--~~C~~C~~~I~~~~~v~~a~~~~~H~---~CF~C~~C~~~L~~g~ 107 (169)
T 2rgt_A 33 CLKCSDCHVPLAERCFSRGESVYCKDDFFKRFG--TKCAACQLGIPPTQVVRRAQDFVYHL---HCFACVVCKRQLATGD 107 (169)
T ss_dssp TSBCTTTCCBCCSCCEESSSCEECHHHHHHHHS--CBCTTTCCBCCTTSEEEEETTEEEEG---GGCBCTTTCCBCCTTC
T ss_pred cCccCCCCCcCCCCCcccCCeeeeccccccccc--ccccccccccCCCcEEEEcCCceEee---CCCcCCCCCCCCCCCC
Confidence 356888888888654578899999887654332 2234445555554432 1 11222 3477999999998655
Q ss_pred eEEEEecCcceehHHHHHHHh
Q 007574 115 HIVAVKTTGNVFCFEAIKELN 135 (597)
Q Consensus 115 ~~v~ik~~G~V~s~eai~~l~ 135 (597)
.+. +..-|.+|+..++.++.
T Consensus 108 ~f~-~~~~g~~~C~~c~~~~~ 127 (169)
T 2rgt_A 108 EFY-LMEDSRLVCKADYETAK 127 (169)
T ss_dssp EEE-ECTTSCEEEHHHHHHHH
T ss_pred ceE-EccCCeEECHHHHHHHh
Confidence 543 44568999999998864
No 188
>2lv2_A Insulinoma-associated protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=42.89 E-value=9 Score=31.43 Aligned_cols=46 Identities=13% Similarity=0.031 Sum_probs=29.4
Q ss_pred CcccccccccccccCceeEEEEecCcceehHHHHHHHhhcccCccccCCCCCCCCCCe
Q 007574 98 EGEYHCPVLNKVFTEFTHIVAVKTTGNVFCFEAIKELNIKTKNWKELLTDEPFTKEDL 155 (597)
Q Consensus 98 ~~~~~CPvt~k~ft~~t~~v~ik~~G~V~s~eai~~l~~k~k~~~~lv~~~~f~~~DI 155 (597)
...|.||+|.+.|.....+. .- .+.-...+.+.|.+|++.|...+-
T Consensus 26 ~~~h~C~~Cgk~F~~~~~L~---------~H---~~~H~~~k~~~C~~C~k~F~~~~~ 71 (85)
T 2lv2_A 26 AECHLCPVCGESFASKGAQE---------RH---LRLLHAAQVFPCKYCPATFYSSPG 71 (85)
T ss_dssp CTTEECTTSCCEESSHHHHH---------HH---HHTTSCSSSEECTTSSCEESSHHH
T ss_pred CCCEECCCCCCCcCcHHHHh---------hh---hhhccCCCccCCCCCCCEeCCHHH
Confidence 44589999999998642211 00 011123467899999999986543
No 189
>1yuz_A Nigerythrin; rubrythrin, rubredoxin, hemerythrin, electron transfer, DIIR center, oxidoreductase; 1.40A {Desulfovibrio vulgaris subsp} SCOP: a.25.1.1 g.41.5.1 PDB: 1yv1_A 1yux_A
Probab=42.63 E-value=7.2 Score=37.56 Aligned_cols=9 Identities=22% Similarity=-0.019 Sum_probs=8.0
Q ss_pred ccccCCCCC
Q 007574 141 WKELLTDEP 149 (597)
Q Consensus 141 ~~~lv~~~~ 149 (597)
|+||+|+.+
T Consensus 187 ~~CP~C~~~ 195 (202)
T 1yuz_A 187 EKCPICFRP 195 (202)
T ss_dssp SBCTTTCCB
T ss_pred CCCCCCCCC
Confidence 899999975
No 190
>1b8t_A Protein (CRP1); LIM domain, muscle differentiation, contractIle; NMR {Gallus gallus} SCOP: g.39.1.3 g.39.1.3 g.39.1.3 g.39.1.3 PDB: 1ibi_A 1qli_A 1cxx_A 1ctl_A 2o13_A
Probab=41.54 E-value=78 Score=29.39 Aligned_cols=33 Identities=6% Similarity=0.155 Sum_probs=25.5
Q ss_pred CccccCCCCCCCCc-eecCCCCeeeHHhHHHHHH
Q 007574 39 FYCCALTFTPFEDP-VCTADGSVFELMSITPYIR 71 (597)
Q Consensus 39 f~~C~LSl~pl~~P-V~t~~G~ly~ke~Il~~L~ 71 (597)
-+.|..+..||..- +...+|.+|++..-.+-+.
T Consensus 34 CF~C~~C~~~L~~~~~~~~~g~~yC~~cy~~~f~ 67 (192)
T 1b8t_A 34 CFLCMVCKKNLDSTTVAVHGDEIYCKSCYGKKYG 67 (192)
T ss_dssp TCBCTTTCCBCCSSSEEEETTEEEEHHHHHHHHS
T ss_pred CCcCcccCCcCCCCeeEecCCEeeChhhhHhhcC
Confidence 45588899998864 6678899999988776553
No 191
>2ctu_A Zinc finger protein 483; zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=39.86 E-value=6.2 Score=29.62 Aligned_cols=40 Identities=10% Similarity=0.076 Sum_probs=30.1
Q ss_pred CcccccccccccccCceeEEEEecCcceehHHHHHHHhhcccCccccCCCCCCCCCCee
Q 007574 98 EGEYHCPVLNKVFTEFTHIVAVKTTGNVFCFEAIKELNIKTKNWKELLTDEPFTKEDLI 156 (597)
Q Consensus 98 ~~~~~CPvt~k~ft~~t~~v~ik~~G~V~s~eai~~l~~k~k~~~~lv~~~~f~~~DII 156 (597)
...|.|+++.+.|.....+.. .+.+.|.+|+..|....-+
T Consensus 16 ~~~~~C~~C~k~f~~~~~l~~-------------------~~~~~C~~C~~~f~~~~~l 55 (73)
T 2ctu_A 16 DRSQKCSKCGIIFIRRSTLSR-------------------RKTPMCEKCRKDSCQEAAL 55 (73)
T ss_dssp CSEEECSSSCCEEECCCCCCC-------------------SSSCCCHHHHHTCSCCCSS
T ss_pred CCCeeCCcccchhCCHHHhCc-------------------CCCCCCCCCChhhcCHHHH
Confidence 456999999999987655432 3568999999999765443
No 192
>4gzn_C ZFP-57, zinc finger protein 57; transcription-DNA complex; HET: DNA 5CM; 0.99A {Mus musculus}
Probab=37.82 E-value=20 Score=27.21 Aligned_cols=43 Identities=7% Similarity=0.180 Sum_probs=28.5
Q ss_pred cccccccccccccCceeEEEEecCcceehHHHHHHHhhcccCccccCCCCCCCCC
Q 007574 99 GEYHCPVLNKVFTEFTHIVAVKTTGNVFCFEAIKELNIKTKNWKELLTDEPFTKE 153 (597)
Q Consensus 99 ~~~~CPvt~k~ft~~t~~v~ik~~G~V~s~eai~~l~~k~k~~~~lv~~~~f~~~ 153 (597)
-.|.|++|++.|+....+. .- .+.-...+.+.|.+|++.|...
T Consensus 3 Kpy~C~~C~k~F~~~~~L~---------~H---~~~Ht~ekp~~C~~C~k~F~~~ 45 (60)
T 4gzn_C 3 RPFFCNFCGKTYRDASGLS---------RH---RRAHLGYRPRSCPECGKCFRDQ 45 (60)
T ss_dssp CCEECTTTCCEESSHHHHH---------HH---HHHHHTCCCEECTTTCCEESSH
T ss_pred CCccCCCCCCEeCCHHHHH---------HH---HHHhCCCcCeECCCCCCCcCCH
Confidence 4589999999998653211 00 1111245679999999999764
No 193
>2eps_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1
Probab=37.64 E-value=20 Score=25.68 Aligned_cols=44 Identities=18% Similarity=0.192 Sum_probs=27.3
Q ss_pred CcccccccccccccCceeEEEEecCcceehHHHHHHHhhcccCccccCCCCCCCC
Q 007574 98 EGEYHCPVLNKVFTEFTHIVAVKTTGNVFCFEAIKELNIKTKNWKELLTDEPFTK 152 (597)
Q Consensus 98 ~~~~~CPvt~k~ft~~t~~v~ik~~G~V~s~eai~~l~~k~k~~~~lv~~~~f~~ 152 (597)
...|.|+++.+.|.....+. .=+...-...+.+.|.+|++.|..
T Consensus 10 ~k~~~C~~C~k~f~~~~~L~-----------~H~~~~H~~~k~~~C~~C~k~F~~ 53 (54)
T 2eps_A 10 GKPYICQSCGKGFSRPDHLN-----------GHIKQVHTSERPHKCQVWVSGPSS 53 (54)
T ss_dssp SCCEECSSSCCEESSHHHHH-----------HHHHHTSCCCCCCCSSSSCCSSCC
T ss_pred CCCeECCCCCcccCCHHHHH-----------HHHHHhcCCCCCccCCCCCCCCCC
Confidence 34689999999997532210 000111123467899999999964
No 194
>2lce_A B-cell lymphoma 6 protein; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=35.01 E-value=21 Score=27.09 Aligned_cols=44 Identities=14% Similarity=0.298 Sum_probs=28.3
Q ss_pred CcccccccccccccCceeEEEEecCcceehHHHHHHHhhcccCccccCCCCCCCCC
Q 007574 98 EGEYHCPVLNKVFTEFTHIVAVKTTGNVFCFEAIKELNIKTKNWKELLTDEPFTKE 153 (597)
Q Consensus 98 ~~~~~CPvt~k~ft~~t~~v~ik~~G~V~s~eai~~l~~k~k~~~~lv~~~~f~~~ 153 (597)
...|.|++|.+.|.....+. .- .+.-...+.++|.+|+..|...
T Consensus 15 ~~~~~C~~C~k~f~~~~~l~---------~H---~~~H~~~~~~~C~~C~k~f~~~ 58 (74)
T 2lce_A 15 DKPYKCDRCQASFRYKGNLA---------SH---KTVHTGEKPYRCNICGAQFNRP 58 (74)
T ss_dssp CCSBCCTTSSCCBSCHHHHH---------HH---HHHHCCCCSEECTTTCCEESCH
T ss_pred CCCeECCCCCceeCCHHHHH---------HH---HHHcCCCCCEECCCCCchhCCH
Confidence 45699999999998643211 00 0111234568999999999764
No 195
>3mjh_B Early endosome antigen 1; protein-zinc finger complex, beta BETA alpha fold, beta HAIR RAB5A GTPase, EEA1, protein transport; HET: GTP; 2.03A {Homo sapiens}
Probab=34.91 E-value=12 Score=25.90 Aligned_cols=14 Identities=21% Similarity=0.406 Sum_probs=11.7
Q ss_pred ccccccccccccCc
Q 007574 100 EYHCPVLNKVFTEF 113 (597)
Q Consensus 100 ~~~CPvt~k~ft~~ 113 (597)
.|+||+|.+.|++.
T Consensus 5 GFiCP~C~~~l~s~ 18 (34)
T 3mjh_B 5 GFICPQCMKSLGSA 18 (34)
T ss_dssp EEECTTTCCEESSH
T ss_pred ccCCcHHHHHcCCH
Confidence 49999999998863
No 196
>2drp_A Protein (tramtrack DNA-binding domain); protein-DNA complex, double helix, transcription/DNA complex; HET: DNA; 2.80A {Drosophila melanogaster} SCOP: g.37.1.1 g.37.1.1
Probab=34.65 E-value=22 Score=26.12 Aligned_cols=45 Identities=20% Similarity=0.337 Sum_probs=27.8
Q ss_pred CcccccccccccccCceeEEEEecCcceehHHHHHHHh-hcccCccccCCCCCCCCC
Q 007574 98 EGEYHCPVLNKVFTEFTHIVAVKTTGNVFCFEAIKELN-IKTKNWKELLTDEPFTKE 153 (597)
Q Consensus 98 ~~~~~CPvt~k~ft~~t~~v~ik~~G~V~s~eai~~l~-~k~k~~~~lv~~~~f~~~ 153 (597)
...|.|++|.+.|.....+. . =+...- ...+.+.|++|+..|...
T Consensus 8 ~k~~~C~~C~k~f~~~~~l~---------~--H~~~~H~~~~~~~~C~~C~k~f~~~ 53 (66)
T 2drp_A 8 EHTYRCKVCSRVYTHISNFC---------R--HYVTSHKRNVKVYPCPFCFKEFTRK 53 (66)
T ss_dssp TTEEECTTTCCEESSHHHHH---------H--HHHHHSSSSCCCEECTTTCCEESCH
T ss_pred CcceECCCCcchhCCHHHHH---------H--HHHHHcCCCCcCeECCCCCCccCCH
Confidence 45699999999997642110 0 000001 134678999999999754
No 197
>3uk3_C Zinc finger protein 217; transcription factor, DNA binding, DNA-metal BI protein complex; 2.10A {Homo sapiens}
Probab=33.67 E-value=26 Score=24.84 Aligned_cols=43 Identities=12% Similarity=0.098 Sum_probs=26.3
Q ss_pred cccccccccccccCceeEEEEecCcceehHHHHHHHhhcccCccccCCCCCCCCC
Q 007574 99 GEYHCPVLNKVFTEFTHIVAVKTTGNVFCFEAIKELNIKTKNWKELLTDEPFTKE 153 (597)
Q Consensus 99 ~~~~CPvt~k~ft~~t~~v~ik~~G~V~s~eai~~l~~k~k~~~~lv~~~~f~~~ 153 (597)
..|.|+++.+.|.....+. -| .+.-...+.+.|++|+..|...
T Consensus 3 ~~~~C~~C~~~f~~~~~l~-----~H-------~~~h~~~~~~~C~~C~~~f~~~ 45 (57)
T 3uk3_C 3 SSRECSYCGKFFRSNYYLN-----IH-------LRTHTGEKPYKCEFCEYAAAQK 45 (57)
T ss_dssp --CBCTTTCCBCSCHHHHH-----HH-------HHHHHCCCCEECSSSSCEESSH
T ss_pred CCccCCCCcchhCChHHHH-----HH-------HHHcCCCCCcCCCCCcchhCCH
Confidence 3589999999998643211 00 0111234568999999988754
No 198
>1vyx_A ORF K3, K3RING; zinc-binding protein, ring domain, cross-brace motif; NMR {Human herpesvirus 8} SCOP: g.44.1.3
Probab=33.64 E-value=29 Score=26.59 Aligned_cols=50 Identities=10% Similarity=0.050 Sum_probs=35.8
Q ss_pred CcccccccccccccCceeEEEEecCcc-----eehHHHHHHHhhcccCccccCCCCCCC
Q 007574 98 EGEYHCPVLNKVFTEFTHIVAVKTTGN-----VFCFEAIKELNIKTKNWKELLTDEPFT 151 (597)
Q Consensus 98 ~~~~~CPvt~k~ft~~t~~v~ik~~G~-----V~s~eai~~l~~k~k~~~~lv~~~~f~ 151 (597)
++.-.|.|+.-...+. .+.||.+ .|-.+||.+-.....+..|++|..+|.
T Consensus 4 ~~~~~CrIC~~~~~~~----l~~PC~C~gs~~~~H~~Cl~~W~~~~~~~~C~~C~~~~~ 58 (60)
T 1vyx_A 4 EDVPVCWICNEELGNE----RFRACGCTGELENVHRSCLSTWLTISRNTACQICGVVYN 58 (60)
T ss_dssp CSCCEETTTTEECSCC----CCCSCCCSSGGGSCCHHHHHHHHHHHTCSBCTTTCCBCC
T ss_pred CCCCEeEEeecCCCCc----eecCcCCCCchhhhHHHHHHHHHHhCCCCccCCCCCeee
Confidence 3456788887764432 2588765 888999998654445678999999885
No 199
>1s24_A Rubredoxin 2; electron transport; NMR {Pseudomonas oleovorans} SCOP: g.41.5.1
Probab=33.56 E-value=8.2 Score=32.44 Aligned_cols=20 Identities=20% Similarity=0.317 Sum_probs=14.1
Q ss_pred ccCccccCCCCCCCCCCeeEec
Q 007574 138 TKNWKELLTDEPFTKEDLITIQ 159 (597)
Q Consensus 138 ~k~~~~lv~~~~f~~~DII~Lq 159 (597)
+..|+||+|+.+ +++.+.+.
T Consensus 66 PddW~CPvCga~--K~~F~~i~ 85 (87)
T 1s24_A 66 PDDWCCPDCGAT--KEDYVLYE 85 (87)
T ss_dssp CTTCCCSSSCCC--GGGEEECS
T ss_pred CCCCCCCCCCCC--HHHhhhcc
Confidence 567999999973 45555543
No 200
>2ctd_A Zinc finger protein 512; zinc binding, two ZF-C2H2 domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Probab=33.21 E-value=28 Score=28.59 Aligned_cols=43 Identities=14% Similarity=0.132 Sum_probs=28.1
Q ss_pred Ccccccccccccc-cCceeEEEEecCcceehHHHHHHHhhcccCccccCCCCCCCCC
Q 007574 98 EGEYHCPVLNKVF-TEFTHIVAVKTTGNVFCFEAIKELNIKTKNWKELLTDEPFTKE 153 (597)
Q Consensus 98 ~~~~~CPvt~k~f-t~~t~~v~ik~~G~V~s~eai~~l~~k~k~~~~lv~~~~f~~~ 153 (597)
...|.|++|.+.| .....+. .- .+.- ..+.+.|.+|++.|...
T Consensus 32 ~~~~~C~~C~k~F~~~~~~L~---------~H---~~~h-~~k~~~C~~Cgk~F~~~ 75 (96)
T 2ctd_A 32 KGSVSCPTCQAVGRKTIEGLK---------KH---MENC-KQEMFTCHHCGKQLRSL 75 (96)
T ss_dssp TSCEECTTTCSCEESSHHHHH---------HH---HHHH-CCCCCCCSSSCCCCSSH
T ss_pred CCCcCCCCCCCCcccCHHHHH---------HH---HHHH-CCCCeECCCCCCeeCCH
Confidence 4569999999999 7543211 00 1111 34678999999999764
No 201
>2v3b_B Rubredoxin 2, rubredoxin; alkane degradation, iron-sulfur protein, oxidoreductase, ELE transfer, electron transport, FAD, NAD, iron; HET: FAD; 2.45A {Pseudomonas aeruginosa}
Probab=32.45 E-value=7.6 Score=29.76 Aligned_cols=18 Identities=17% Similarity=0.097 Sum_probs=12.7
Q ss_pred ccCccccCCCCCCCCCCeeE
Q 007574 138 TKNWKELLTDEPFTKEDLIT 157 (597)
Q Consensus 138 ~k~~~~lv~~~~f~~~DII~ 157 (597)
+..|+||+|+.+ +++.+.
T Consensus 34 P~dw~CP~Cga~--K~~F~~ 51 (55)
T 2v3b_B 34 PADWVCPDCGVG--KIDFEM 51 (55)
T ss_dssp CTTCCCTTTCCC--GGGEEE
T ss_pred CCCCcCCCCCCC--HHHcee
Confidence 568999999974 444443
No 202
>2kn9_A Rubredoxin; metalloprotein, ssgcid, structural genomics, seattle structural genomics center for infectious electron transport, iron; NMR {Mycobacterium tuberculosis}
Probab=32.14 E-value=7 Score=32.43 Aligned_cols=19 Identities=16% Similarity=0.310 Sum_probs=13.8
Q ss_pred ccCccccCCCCCCCCCCeeEe
Q 007574 138 TKNWKELLTDEPFTKEDLITI 158 (597)
Q Consensus 138 ~k~~~~lv~~~~f~~~DII~L 158 (597)
+..|+||+|+.+ +++.+.+
T Consensus 58 PddW~CPvCga~--K~~F~~i 76 (81)
T 2kn9_A 58 PDDWSCPDCGAA--KSDFEMV 76 (81)
T ss_dssp CTTCCCTTTCCC--GGGEEEE
T ss_pred CCCCcCCCCCCC--HHHcEEc
Confidence 567999999984 4555554
No 203
>3k1l_B Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A {Drosophila melanogaster}
Probab=31.49 E-value=16 Score=38.25 Aligned_cols=33 Identities=15% Similarity=0.326 Sum_probs=26.7
Q ss_pred cccCCCCCCCC----c--eec--CCCCeeeHHhHHHHHHhc
Q 007574 41 CCALTFTPFED----P--VCT--ADGSVFELMSITPYIRKY 73 (597)
Q Consensus 41 ~C~LSl~pl~~----P--V~t--~~G~ly~ke~Il~~L~k~ 73 (597)
-|+||+.-+.+ | +|. .-||.|-..||.+||+..
T Consensus 310 ECaICys~~l~~g~lPdk~C~n~~C~h~FH~~CL~kWLrs~ 350 (381)
T 3k1l_B 310 RCNICFAYRLDGGEVPLVSCDNAKCVLKCHAVCLEEWFKTL 350 (381)
T ss_dssp SCSSSCCSSCTTCCCCCBCCSCTTCCCCBCSGGGHHHHHHH
T ss_pred cCcccceeecCCCCCccccccCCccCCccchHHHHHHHHhC
Confidence 59999988775 6 453 349999999999999864
No 204
>1x6e_A Zinc finger protein 24; ZNF24, KOX17, ZNF191, zscan3, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Probab=30.88 E-value=28 Score=26.22 Aligned_cols=44 Identities=23% Similarity=0.403 Sum_probs=27.8
Q ss_pred CcccccccccccccCceeEEEEecCcceehHHHHHHHhhcccCccccCCCCCCCCC
Q 007574 98 EGEYHCPVLNKVFTEFTHIVAVKTTGNVFCFEAIKELNIKTKNWKELLTDEPFTKE 153 (597)
Q Consensus 98 ~~~~~CPvt~k~ft~~t~~v~ik~~G~V~s~eai~~l~~k~k~~~~lv~~~~f~~~ 153 (597)
...|.|++|.+.|.....+. -| .+.-...+.++|++|+..|...
T Consensus 12 ~k~~~C~~C~k~f~~~~~L~-----~H-------~~~h~~~~~~~C~~C~~~f~~~ 55 (72)
T 1x6e_A 12 EKPYGCVECGKAFSRSSILV-----QH-------QRVHTGEKPYKCLECGKAFSQN 55 (72)
T ss_dssp CCCEECSSSCCEESSHHHHH-----HH-------HHGGGCSCCEECSSSCCEESSH
T ss_pred CCCccCCCCCCccCCHHHHH-----HH-------HHhcCCCCCeECCCCCcccCCH
Confidence 45699999999997532211 00 0111234678999999988754
No 205
>2jyp_A Aragonite protein AP7; protein C-terminal fragment, unknown function; NMR {Synthetic}
Probab=30.73 E-value=21 Score=24.13 Aligned_cols=17 Identities=41% Similarity=0.845 Sum_probs=12.7
Q ss_pred CCCCCCCCCccccCCCCC
Q 007574 31 RTPFKRLPFYCCALTFTP 48 (597)
Q Consensus 31 ~~~~~~lpf~~C~LSl~p 48 (597)
+.+|+ .||.-|+|+...
T Consensus 2 rhsfr-rpfhecalcysi 18 (36)
T 2jyp_A 2 RHSFR-RPFHECALCYSI 18 (36)
T ss_dssp CSSST-TTTTCCSSSTTT
T ss_pred ccccc-CccchheeEEee
Confidence 34676 599999999753
No 206
>2d9h_A Zinc finger protein 692; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=30.65 E-value=21 Score=27.35 Aligned_cols=48 Identities=8% Similarity=0.131 Sum_probs=28.3
Q ss_pred CcccccccccccccCceeEEEEecCcceehHHHHHHHhhcccCccccCCCCCCCCCC
Q 007574 98 EGEYHCPVLNKVFTEFTHIVAVKTTGNVFCFEAIKELNIKTKNWKELLTDEPFTKED 154 (597)
Q Consensus 98 ~~~~~CPvt~k~ft~~t~~v~ik~~G~V~s~eai~~l~~k~k~~~~lv~~~~f~~~D 154 (597)
...|.|++|.+.|.....+. -| ..+-.-....+.+.|.+|+..|...+
T Consensus 5 ~k~~~C~~C~k~f~~~~~L~-----~H----~~~h~~~~~~~~~~C~~C~k~f~~~~ 52 (78)
T 2d9h_A 5 SSGLQCEICGFTCRQKASLN-----WH----QRKHAETVAALRFPCEFCGKRFEKPD 52 (78)
T ss_dssp CCCEECSSSCCEESSHHHHH-----HH----HHHHHHHTTTCCEECTTTCCEESSHH
T ss_pred CcCeECCCCCCeeCCHHHHH-----HH----HHHhhccCCCcccCCCCCCchhCCHH
Confidence 35699999999998642211 01 00000001246789999999997643
No 207
>1bbo_A Human enhancer-binding protein MBP-1; DNA-binding protein; HET: ABA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 PDB: 3znf_A 4znf_A
Probab=30.46 E-value=24 Score=25.02 Aligned_cols=42 Identities=7% Similarity=0.138 Sum_probs=25.8
Q ss_pred ccccccccccccCceeEEEEecCcceehHHHHHHHhhcccCccccCCCCCCCCC
Q 007574 100 EYHCPVLNKVFTEFTHIVAVKTTGNVFCFEAIKELNIKTKNWKELLTDEPFTKE 153 (597)
Q Consensus 100 ~~~CPvt~k~ft~~t~~v~ik~~G~V~s~eai~~l~~k~k~~~~lv~~~~f~~~ 153 (597)
.|.|+++.+.|.....+. .= .+.-...+.+.|.+|+..|...
T Consensus 1 p~~C~~C~~~f~~~~~l~-----------~H-~~~h~~~~~~~C~~C~~~f~~~ 42 (57)
T 1bbo_A 1 KYICEECGIRXKKPSMLK-----------KH-IRTHTDVRPYHCTYCNFSFKTK 42 (57)
T ss_dssp CCBCTTTCCBCSSHHHHH-----------HH-HHHTSSCCCEECSSSSCEESSH
T ss_pred CCcCCCCcCcCCCHHHHH-----------HH-HHhcCCCCCccCCCCCchhcCH
Confidence 378999999997642211 00 0111234568999999988754
No 208
>1f2i_G Fusion of N-terminal 17-MER peptide extension to ZIF12; zinc finger, dimer, protein-DNA complex, cooperativity, transcription/DNA complex; 2.35A {Mus musculus} SCOP: g.37.1.1 g.37.1.1
Probab=29.84 E-value=38 Score=25.37 Aligned_cols=46 Identities=17% Similarity=0.376 Sum_probs=28.1
Q ss_pred cCccccccc--ccccccCceeEEEEecCcceehHHHHHHHhhcccCccccCCCCCCCCCC
Q 007574 97 AEGEYHCPV--LNKVFTEFTHIVAVKTTGNVFCFEAIKELNIKTKNWKELLTDEPFTKED 154 (597)
Q Consensus 97 ~~~~~~CPv--t~k~ft~~t~~v~ik~~G~V~s~eai~~l~~k~k~~~~lv~~~~f~~~D 154 (597)
....|.||+ |.+.|.....+. .- .+.-...+.+.|.+|+..|...+
T Consensus 16 ~~~~~~C~~~~C~k~f~~~~~l~---------~H---~~~h~~~~~~~C~~C~~~f~~~~ 63 (73)
T 1f2i_G 16 KMRPYACPVESCDRRFSRSDELT---------RH---IRIHTGQKPFQCRICMRNFSRSD 63 (73)
T ss_dssp CCCCEECSSTTBCCEESSHHHHH---------HH---HHHHHCCCCEECTTTCCEESCHH
T ss_pred CCCccCCcCCCCCCccCCHHHHH---------HH---HHhhCCCCCeECCCCCchhCCHH
Confidence 345699985 988887532110 00 01112346689999999997643
No 209
>1dx8_A Rubredoxin; electron transport, zinc-substitution; NMR {Guillardia theta} SCOP: g.41.5.1 PDB: 1h7v_A
Probab=29.60 E-value=9.2 Score=30.77 Aligned_cols=20 Identities=15% Similarity=0.293 Sum_probs=14.6
Q ss_pred ccCccccCCCCCCCCCCeeEec
Q 007574 138 TKNWKELLTDEPFTKEDLITIQ 159 (597)
Q Consensus 138 ~k~~~~lv~~~~f~~~DII~Lq 159 (597)
+..|+||+|+.+ +++.+.+.
T Consensus 38 Pddw~CP~Cga~--K~~F~~~~ 57 (70)
T 1dx8_A 38 SDSFMCPACRSP--KNQFKSIK 57 (70)
T ss_dssp CTTCBCTTTCCB--GGGEEECC
T ss_pred CCCCcCCCCCCC--HHHceEcc
Confidence 567999999984 55666553
No 210
>1e8j_A Rubredoxin; iron-sulfur-protein, zinc-substitution, thermostability; NMR {Desulfovibrio gigas} SCOP: g.41.5.1 PDB: 1rdg_A 2dsx_A 1spw_A
Probab=28.67 E-value=7.7 Score=29.38 Aligned_cols=12 Identities=8% Similarity=0.365 Sum_probs=10.1
Q ss_pred ccCccccCCCCC
Q 007574 138 TKNWKELLTDEP 149 (597)
Q Consensus 138 ~k~~~~lv~~~~ 149 (597)
+..|+||+|+.+
T Consensus 34 P~dw~CP~Cg~~ 45 (52)
T 1e8j_A 34 PDDWACPVCGAS 45 (52)
T ss_dssp CTTCCCSSSCCC
T ss_pred CCCCcCCCCCCc
Confidence 567999999974
No 211
>1m3v_A FLIN4, fusion of the LIM interacting domain of LDB1 and the N-terminal LIM domain of LMO4...; fusion protein, LMO proteins, metal binding protein; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=28.41 E-value=38 Score=29.23 Aligned_cols=57 Identities=11% Similarity=0.107 Sum_probs=41.4
Q ss_pred ccccccccccccCc-eeEEEEecCcceehHHHHHHHhhcccCccccCCCCCCCCCCeeEecC
Q 007574 100 EYHCPVLNKVFTEF-THIVAVKTTGNVFCFEAIKELNIKTKNWKELLTDEPFTKEDLITIQN 160 (597)
Q Consensus 100 ~~~CPvt~k~ft~~-t~~v~ik~~G~V~s~eai~~l~~k~k~~~~lv~~~~f~~~DII~Lqd 160 (597)
-|.|..+.+.|.+. ..++ ..-|.+|+..++.++--.. -+|-.|+++++..+|+.+-+
T Consensus 32 CF~C~~C~~~L~~~~~~~~--~~~g~~yC~~cy~~~f~~~--~~C~~C~~~I~~~~~~~~g~ 89 (122)
T 1m3v_A 32 CLKCSSCQAQLGDIGTSSY--TKSGMILCRNDYIRLFGNS--GAGGSGGHMGSGGDVMVVGE 89 (122)
T ss_dssp HHCCSSSCCCTTTSEECCE--EETTEEECHHHHHHHHCCC--CSSSCSSCCSCCEESSSSSS
T ss_pred CCCcCCCCCcccccCCeEE--EECCeeecHHHHHHHcCCC--CccccCCCCcCchheEEcCC
Confidence 36799999999742 3333 4569999999998864221 27999999999877765543
No 212
>1rut_X Flinc4, fusion protein of LMO4 protein and LIM domain- binding protein 1; B-tandem zipper, protein binding; 1.30A {Mus musculus} SCOP: g.39.1.3 g.39.1.3 g.39.1.3 g.39.1.3 PDB: 2dfy_X 2xjz_I 2xjy_B
Probab=27.30 E-value=15 Score=34.45 Aligned_cols=90 Identities=12% Similarity=0.232 Sum_probs=58.6
Q ss_pred ccccCCCCCCCC---ceecCCCCeeeHHhHHHHHHhcCCCCCCCCCCCCCC-ccc---cccccccCcccccccccccccC
Q 007574 40 YCCALTFTPFED---PVCTADGSVFELMSITPYIRKYGKHPVTGTPLKLED-LIP---LTFHKNAEGEYHCPVLNKVFTE 112 (597)
Q Consensus 40 ~~C~LSl~pl~~---PV~t~~G~ly~ke~Il~~L~k~~~~Pvtg~~l~lkd-Li~---l~f~kn~~~~~~CPvt~k~ft~ 112 (597)
+.|..+..+|.+ ++...+|.+|++..-..-+........-++++...+ ++. ..|+. .-|.|-.+.+.|..
T Consensus 33 F~C~~C~~~L~~~g~~~~~~~g~~yC~~cy~~~~~~~~~C~~C~~~I~~~e~~i~a~~~~~H~---~CF~C~~C~~~L~~ 109 (188)
T 1rut_X 33 LKCSSCQAQLGDIGTSSYTKSGMILCRNDYIRLFGNSGACSACGQSIPASELVMRAQGNVYHL---KCFTCSTCRNRLVP 109 (188)
T ss_dssp CBCTTTCCBHHHHCSEEEEETTEEECHHHHHHHHSCCEECTTTCCEECTTSEEEEETTEEECG---GGCBCTTTCCBCCT
T ss_pred cccCCCCcccccCCceEEEeCCccccccccccccccCCccccCCCccccCcEEEEcCCCEEeC---CCCeECCCCCCCCC
Confidence 468889999874 788889999999876554432113555566665444 222 12332 34779999999975
Q ss_pred ceeEEEEecCcceehHHHHHHH
Q 007574 113 FTHIVAVKTTGNVFCFEAIKEL 134 (597)
Q Consensus 113 ~t~~v~ik~~G~V~s~eai~~l 134 (597)
...++ + .-|.+|+..++.++
T Consensus 110 g~~f~-~-~~g~~yC~~c~~~~ 129 (188)
T 1rut_X 110 GDRFH-Y-INGSLFCEHDRPTA 129 (188)
T ss_dssp TCEEE-E-ETTEEEEGGGCCTT
T ss_pred CCeEE-E-ECCeEECHHHHHHH
Confidence 44554 2 34889988887654
No 213
>1x5w_A Zinc finger protein 64, isoforms 1; ZNF338, nuclear protein, DNA binding, transcription, C2H2 type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Probab=24.84 E-value=37 Score=25.30 Aligned_cols=44 Identities=5% Similarity=-0.011 Sum_probs=27.5
Q ss_pred CcccccccccccccCceeEEEEecCcceehHHHHHHHhhcccCccccCCCCCCCCC
Q 007574 98 EGEYHCPVLNKVFTEFTHIVAVKTTGNVFCFEAIKELNIKTKNWKELLTDEPFTKE 153 (597)
Q Consensus 98 ~~~~~CPvt~k~ft~~t~~v~ik~~G~V~s~eai~~l~~k~k~~~~lv~~~~f~~~ 153 (597)
...|.|++|.+.|.....+. .=.+.-...+.++|.+|+..|...
T Consensus 7 ~~~~~C~~C~k~f~~~~~L~------------~H~~~H~~~~~~~C~~C~~~f~~~ 50 (70)
T 1x5w_A 7 GHPEKCSECSYSCSSKAALR------------IHERIHCTDRPFKCNYCSFDTKQP 50 (70)
T ss_dssp CCSEECSSSSCEESSHHHHH------------HHHGGGCCSCSEECSSSSCEESSH
T ss_pred CCCeECCCCCcccCCHHHHH------------HHHHHcCCCCCEeCCCCCCccCCH
Confidence 45689999999998632211 000111134568999999998754
No 214
>2adr_A ADR1; transcription regulation, zinc finger,; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 g.37.1.1
Probab=24.15 E-value=39 Score=24.16 Aligned_cols=42 Identities=19% Similarity=0.377 Sum_probs=25.7
Q ss_pred ccccccccccccCceeEEEEecCcceehHHHHHHHhhcccCccccCCCCCCCCC
Q 007574 100 EYHCPVLNKVFTEFTHIVAVKTTGNVFCFEAIKELNIKTKNWKELLTDEPFTKE 153 (597)
Q Consensus 100 ~~~CPvt~k~ft~~t~~v~ik~~G~V~s~eai~~l~~k~k~~~~lv~~~~f~~~ 153 (597)
.|.|++|.+.|.....+.. | .+.-...+.+.|.+|+..|...
T Consensus 2 ~~~C~~C~~~f~~~~~l~~-----H-------~~~h~~~~~~~C~~C~~~f~~~ 43 (60)
T 2adr_A 2 SFVCEVCTRAFARQEHLKR-----H-------YRSHTNEKPYPCGLCNRAFTRR 43 (60)
T ss_dssp CBCCTTTCCCBSCHHHHHH-----H-------HHTTTSSCSEECTTTCCEESSH
T ss_pred cCcCCCCccccCCHHHHHH-----H-------HHHhCCCCCccCCCCCCccCCH
Confidence 4789999999975422110 0 0011124568999999998754
No 215
>3pwf_A Rubrerythrin; non heme iron peroxidases, oxidative stress, oxidoreductase; 1.64A {Pyrococcus furiosus} PDB: 3mps_A 3pza_A 3qvd_A 1nnq_A 2hr5_A
Probab=23.91 E-value=29 Score=32.36 Aligned_cols=8 Identities=13% Similarity=0.069 Sum_probs=7.0
Q ss_pred cccCCCCC
Q 007574 142 KELLTDEP 149 (597)
Q Consensus 142 ~~lv~~~~ 149 (597)
+||+|+.+
T Consensus 155 ~CP~Cg~~ 162 (170)
T 3pwf_A 155 YCPVCGAP 162 (170)
T ss_dssp BCTTTCCB
T ss_pred CCCCCCCC
Confidence 89999965
No 216
>2gqj_A Zinc finger protein KIAA1196; ZF-C2H2 like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=22.78 E-value=25 Score=28.63 Aligned_cols=46 Identities=17% Similarity=0.217 Sum_probs=28.1
Q ss_pred cCccccccccccccc-CceeEEEEecCcceehHHHHHHHhhcccCccccCCCCCCCCC
Q 007574 97 AEGEYHCPVLNKVFT-EFTHIVAVKTTGNVFCFEAIKELNIKTKNWKELLTDEPFTKE 153 (597)
Q Consensus 97 ~~~~~~CPvt~k~ft-~~t~~v~ik~~G~V~s~eai~~l~~k~k~~~~lv~~~~f~~~ 153 (597)
....|.|++|.+.|. ....+. -|+..... ..+.+.|.+|++.|...
T Consensus 21 ~~~~~~C~~C~k~f~~~~~~L~-----~H~~~h~~------~~~~~~C~~C~k~F~~~ 67 (98)
T 2gqj_A 21 ERGEAVCPTCNVVTRKTLVGLK-----KHMEVCQK------LQDALKCQHCRKQFKSK 67 (98)
T ss_dssp TTSCCCCTTTCCCCSSCSHHHH-----HHHHHHHH------HHHHHSCSSSCCCCSCH
T ss_pred cCCCcCCCCCCCChhhhHHHHH-----HHHHHHcC------CCCCEECCCCCCccCCH
Confidence 356799999999998 543221 11100000 02357999999999764
No 217
>2cs3_A Protein C14ORF4, MY039 protein; ZF-C3HC4 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.3
Probab=21.77 E-value=98 Score=25.61 Aligned_cols=37 Identities=22% Similarity=0.362 Sum_probs=31.2
Q ss_pred CCccccCCCCCCCCc--eecCC--CCeeeHHhHHHHHHhcC
Q 007574 38 PFYCCALTFTPFEDP--VCTAD--GSVFELMSITPYIRKYG 74 (597)
Q Consensus 38 pf~~C~LSl~pl~~P--V~t~~--G~ly~ke~Il~~L~k~~ 74 (597)
.-.+|.|+.+-|++- |-||. +|-|+.-+--.+|++.+
T Consensus 14 a~l~CtlC~erLEdtHFVQCPsv~~HkFCFpCsr~sIk~q~ 54 (93)
T 2cs3_A 14 GPLCCTICHERLEDTHFVQCPSVPSHKFCFPCSRESIKAQG 54 (93)
T ss_dssp CSCCCSSSCSCCSSTTSEECSSCSSCEECHHHHHHHHHHHH
T ss_pred CeeEeecchhhhccCceeeCCCccCCeeeccccHHHHHhcC
Confidence 456899999999975 55776 99999999999998864
No 218
>3vk6_A E3 ubiquitin-protein ligase hakai; HYB, phosphotyrosine binding domain; 1.90A {Mus musculus}
Probab=21.76 E-value=1.1e+02 Score=26.31 Aligned_cols=60 Identities=13% Similarity=0.099 Sum_probs=43.9
Q ss_pred ccccCCCCCCCC-ceecCCCCeeeHHhHHHHHHh-cCCCCCCCCCCCCCCccccccccccCccccccc
Q 007574 40 YCCALTFTPFED-PVCTADGSVFELMSITPYIRK-YGKHPVTGTPLKLEDLIPLTFHKNAEGEYHCPV 105 (597)
Q Consensus 40 ~~C~LSl~pl~~-PV~t~~G~ly~ke~Il~~L~k-~~~~Pvtg~~l~lkdLi~l~f~kn~~~~~~CPv 105 (597)
.+|..+.-|+.. --+-|-+|+|+..+++.|.++ .+..|+-..++ ..|....+ ++-|+|++
T Consensus 2 hfC~~C~~Pi~iygRmIPCkHvFCydCa~~~~~~~~k~Cp~C~~~V-----~rVe~~~~-~~if~C~~ 63 (101)
T 3vk6_A 2 HFCDKCGLPIKVYGRMIPCKHVFCYDCAILHEKKGDKMCPGCSDPV-----QRIEQCTR-GSLFMCSI 63 (101)
T ss_dssp CBCTTTCSBCSEEEEEETTCCEEEHHHHHHHHHTTCCBCTTTCCBC-----SEEEEEEG-GGCCCCCC
T ss_pred eecCccCCCeEEEeeeccccccHHHHHHHHHHhccCCCCcCcCCee-----eeeEEecc-CCEEECCC
Confidence 468888888875 345788999999999999864 56688876543 33444444 67799994
No 219
>2ct1_A Transcriptional repressor CTCF; CCCTC-BINDING factor, zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Probab=21.36 E-value=53 Score=24.92 Aligned_cols=46 Identities=15% Similarity=0.238 Sum_probs=27.8
Q ss_pred CcccccccccccccCceeEEEEecCcceehHHHHHHHhh-cccCccccCCCCCCCCCC
Q 007574 98 EGEYHCPVLNKVFTEFTHIVAVKTTGNVFCFEAIKELNI-KTKNWKELLTDEPFTKED 154 (597)
Q Consensus 98 ~~~~~CPvt~k~ft~~t~~v~ik~~G~V~s~eai~~l~~-k~k~~~~lv~~~~f~~~D 154 (597)
+..|.|++|.+.|.....+. .=+...-. ..+.+.|++|+..|...+
T Consensus 13 ~k~~~C~~C~k~f~~~~~L~-----------~H~~~~h~~~~~~~~C~~C~~~f~~~~ 59 (77)
T 2ct1_A 13 EKPYECYICHARFTQSGTMK-----------MHILQKHTENVAKFHCPHCDTVIARKS 59 (77)
T ss_dssp CCSEECTTTCCEESCHHHHH-----------HHHHHHSSSSCSSEECSSSSCEESSHH
T ss_pred CCCeECCCcCchhCCHHHHH-----------HHHHHhcCCCCCccCCCCCCCccCCHH
Confidence 45699999999997642210 00010111 125689999999997643
No 220
>2cot_A Zinc finger protein 435; ADK_LID domain, zinc finger and SCAN domain containing protein 16, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Probab=21.35 E-value=49 Score=25.12 Aligned_cols=46 Identities=15% Similarity=0.289 Sum_probs=28.4
Q ss_pred cCcccccccccccccCceeEEEEecCcceehHHHHHHHhhcccCccccCCCCCCCCCC
Q 007574 97 AEGEYHCPVLNKVFTEFTHIVAVKTTGNVFCFEAIKELNIKTKNWKELLTDEPFTKED 154 (597)
Q Consensus 97 ~~~~~~CPvt~k~ft~~t~~v~ik~~G~V~s~eai~~l~~k~k~~~~lv~~~~f~~~D 154 (597)
....|.|++|.+.|.....+.. | .+.-...+.+.|.+|+..|...+
T Consensus 15 ~~~~~~C~~C~~~f~~~~~l~~-----H-------~~~h~~~~~~~C~~C~~~f~~~~ 60 (77)
T 2cot_A 15 ERRRYKCDECGKSFSHSSDLSK-----H-------RRTHTGEKPYKCDECGKAFIQRS 60 (77)
T ss_dssp CSCSSBCSSSCCBCSCHHHHHH-----H-------HTTTCCSCSEECSSSCCEESSHH
T ss_pred CCCCEECCCCCcccCCHHHHHH-----H-------HHHcCCCcCeeCCCCCCccCCHH
Confidence 3567999999999975322110 0 00111245689999999997643
No 221
>4rxn_A Rubredoxin; electron transfer(iron-sulfur protein); 1.20A {Clostridium pasteurianum} SCOP: g.41.5.1 PDB: 5rxn_A 1bfy_A 1fhh_A 1fhm_A 1irn_A 1iro_A 1r0f_A 1r0g_A 1r0h_A 1r0i_A 1r0j_A 1t9q_A 1c09_A 1b2j_A 1b13_A 1smm_A 1smu_A 1smw_A 1be7_A 1t9o_A ...
Probab=21.24 E-value=41 Score=25.61 Aligned_cols=19 Identities=16% Similarity=0.370 Sum_probs=13.0
Q ss_pred ccCccccCCCCCCCCCCeeEe
Q 007574 138 TKNWKELLTDEPFTKEDLITI 158 (597)
Q Consensus 138 ~k~~~~lv~~~~f~~~DII~L 158 (597)
+..|+||+|+.+ +++.+.+
T Consensus 34 P~dw~CP~Cg~~--K~~F~~~ 52 (54)
T 4rxn_A 34 PDDWVCPLCGVG--KDEFEEV 52 (54)
T ss_dssp CTTCBCTTTCCB--GGGEEEC
T ss_pred CCCCcCcCCCCc--HHHceEc
Confidence 567999999975 4455444
No 222
>2k5c_A Uncharacterized protein PF0385; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; NMR {Pyrococcus furiosus}
Probab=21.03 E-value=13 Score=30.89 Aligned_cols=38 Identities=37% Similarity=0.616 Sum_probs=24.7
Q ss_pred CCCCCCCCCCCCCcccccccccc----------------CcccccccccccccC
Q 007574 75 KHPVTGTPLKLEDLIPLTFHKNA----------------EGEYHCPVLNKVFTE 112 (597)
Q Consensus 75 ~~Pvtg~~l~lkdLi~l~f~kn~----------------~~~~~CPvt~k~ft~ 112 (597)
.+|+.|.+|+-.+||.--..... +--|.||+|+.+|-+
T Consensus 10 ~~PlCG~~L~W~eLIeQML~~en~~ei~kDr~~Fl~~~e~F~FkCP~CgEEFyG 63 (95)
T 2k5c_A 10 KCPICGSPLKWEELIEEMLIIENFEEIVKDRERFLAQVEEFVFKCPVCGEEFYG 63 (95)
T ss_dssp ECSSSCCEECHHHHHHHSTTCSTHHHHTTCHHHHHHHHHHSEEECTTTCCEEET
T ss_pred cCCcCCCccCHHHHHHHHHhhccHHHHHhhHHHHHHHHHHHhhcCCCccHHHhc
Confidence 36888888887777765543221 122568888888764
No 223
>2m0e_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}
Probab=20.56 E-value=47 Score=19.22 Aligned_cols=14 Identities=21% Similarity=0.192 Sum_probs=10.5
Q ss_pred CccccCCCCCCCCC
Q 007574 140 NWKELLTDEPFTKE 153 (597)
Q Consensus 140 ~~~~lv~~~~f~~~ 153 (597)
.+.|..|+..|...
T Consensus 2 ~~~C~~C~~~f~~~ 15 (29)
T 2m0e_A 2 EHKCPHCDKKFNQV 15 (29)
T ss_dssp CCCCSSCCCCCCTT
T ss_pred CCcCCCCCcccCCH
Confidence 46788898888654
No 224
>1dum_A Magainin 2; antibiotic, dimer, amphipathic helix, membrane, vesicle, bilayer, antimicrobial protein; NMR {Synthetic} SCOP: j.4.1.1 PDB: 2mag_A
Probab=20.17 E-value=25 Score=22.18 Aligned_cols=9 Identities=56% Similarity=1.198 Sum_probs=7.1
Q ss_pred ccccccccc
Q 007574 552 GVGKYLKAR 560 (597)
Q Consensus 552 gvgkyl~~~ 560 (597)
|+||||..+
T Consensus 1 gigkylhsa 9 (26)
T 1dum_A 1 GIGKYLHSA 9 (26)
T ss_dssp CCSSTTTTH
T ss_pred ChhHHHHHH
Confidence 789999654
Done!