Query 007575
Match_columns 597
No_of_seqs 550 out of 3269
Neff 6.1
Searched_HMMs 46136
Date Thu Mar 28 12:28:48 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007575.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/007575hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0465 HflB ATP-dependent Zn 100.0 2.8E-65 6E-70 564.2 34.5 384 181-593 23-408 (596)
2 KOG0731 AAA+-type ATPase conta 100.0 9.5E-61 2.1E-65 536.0 38.1 267 324-591 303-569 (774)
3 KOG0734 AAA+-type ATPase conta 100.0 7.2E-62 1.6E-66 518.2 26.3 266 323-594 295-560 (752)
4 KOG0730 AAA+-type ATPase [Post 100.0 4.3E-59 9.3E-64 509.8 28.8 327 240-578 320-677 (693)
5 KOG0733 Nuclear AAA ATPase (VC 100.0 1E-58 2.3E-63 500.4 30.0 342 239-584 328-778 (802)
6 COG1222 RPT1 ATP-dependent 26S 100.0 6.4E-59 1.4E-63 479.9 27.1 257 323-582 142-399 (406)
7 CHL00176 ftsH cell division pr 100.0 6.9E-50 1.5E-54 451.7 37.1 383 178-584 47-432 (638)
8 PRK10733 hflB ATP-dependent me 100.0 3.7E-46 8E-51 424.1 42.0 376 182-589 31-406 (644)
9 KOG0736 Peroxisome assembly fa 100.0 1.1E-46 2.3E-51 415.8 26.4 252 324-580 664-937 (953)
10 KOG0729 26S proteasome regulat 100.0 3.8E-46 8.2E-51 371.5 19.3 259 323-584 168-427 (435)
11 KOG0727 26S proteasome regulat 100.0 5E-45 1.1E-49 361.3 23.5 254 323-579 146-400 (408)
12 KOG0733 Nuclear AAA ATPase (VC 100.0 3.1E-45 6.8E-50 396.1 22.6 226 327-558 185-414 (802)
13 TIGR01241 FtsH_fam ATP-depende 100.0 6.3E-44 1.4E-48 395.4 32.2 265 322-589 45-309 (495)
14 KOG0728 26S proteasome regulat 100.0 7.6E-45 1.6E-49 359.7 21.8 253 325-580 140-393 (404)
15 KOG0652 26S proteasome regulat 100.0 6.8E-45 1.5E-49 361.7 21.1 254 323-579 162-416 (424)
16 KOG0738 AAA+-type ATPase [Post 100.0 4E-44 8.6E-49 372.2 22.1 249 324-580 204-474 (491)
17 KOG0726 26S proteasome regulat 100.0 1.7E-44 3.7E-49 363.3 17.0 253 324-579 177-430 (440)
18 TIGR01243 CDC48 AAA family ATP 100.0 2.8E-43 6.1E-48 406.7 29.5 334 242-580 316-715 (733)
19 COG0464 SpoVK ATPases of the A 100.0 1.2E-42 2.5E-47 384.9 28.6 330 243-578 121-486 (494)
20 COG1223 Predicted ATPase (AAA+ 100.0 3.7E-43 8E-48 349.4 21.7 242 324-575 113-355 (368)
21 PTZ00454 26S protease regulato 100.0 3.2E-42 7E-47 371.3 29.1 253 324-579 137-390 (398)
22 PRK03992 proteasome-activating 100.0 5.1E-41 1.1E-45 361.8 28.8 256 324-582 123-379 (389)
23 KOG0735 AAA+-type ATPase [Post 100.0 6.5E-41 1.4E-45 367.1 24.3 281 272-558 603-888 (952)
24 PTZ00361 26 proteosome regulat 100.0 1.9E-40 4.2E-45 360.3 24.9 252 324-578 175-427 (438)
25 CHL00206 ycf2 Ycf2; Provisiona 100.0 1.3E-40 2.8E-45 394.9 24.4 222 355-586 1620-1888(2281)
26 KOG0739 AAA+-type ATPase [Post 100.0 2E-40 4.3E-45 334.9 14.6 229 322-558 123-353 (439)
27 CHL00195 ycf46 Ycf46; Provisio 100.0 6.8E-39 1.5E-43 352.7 26.3 245 327-579 223-467 (489)
28 TIGR01242 26Sp45 26S proteasom 100.0 6.2E-38 1.3E-42 334.9 27.8 249 324-575 114-363 (364)
29 KOG0737 AAA+-type ATPase [Post 100.0 8.6E-38 1.9E-42 324.8 21.5 247 324-578 84-362 (386)
30 KOG0651 26S proteasome regulat 100.0 2.8E-38 6E-43 321.2 13.6 249 326-577 126-375 (388)
31 TIGR03689 pup_AAA proteasome A 100.0 1.1E-35 2.4E-40 327.5 25.4 254 322-579 172-482 (512)
32 KOG0730 AAA+-type ATPase [Post 100.0 9.2E-34 2E-38 311.1 21.4 244 327-584 180-425 (693)
33 KOG0732 AAA+-type ATPase conta 100.0 4.5E-34 9.7E-39 328.5 19.6 256 325-585 258-535 (1080)
34 KOG0741 AAA+-type ATPase [Post 100.0 3.7E-34 7.9E-39 306.2 14.7 252 326-579 213-494 (744)
35 TIGR01243 CDC48 AAA family ATP 100.0 1.3E-32 2.8E-37 318.1 25.7 249 326-580 172-440 (733)
36 KOG0740 AAA+-type ATPase [Post 100.0 6.6E-32 1.4E-36 289.1 17.1 248 324-579 145-408 (428)
37 PLN00020 ribulose bisphosphate 100.0 1.9E-31 4.1E-36 280.1 20.1 215 328-553 111-349 (413)
38 CHL00181 cbbX CbbX; Provisiona 99.9 1.6E-22 3.6E-27 210.0 22.2 223 332-568 23-271 (287)
39 TIGR02880 cbbX_cfxQ probable R 99.9 2.8E-22 6.1E-27 207.9 20.4 211 333-557 23-255 (284)
40 TIGR02881 spore_V_K stage V sp 99.9 5.3E-22 1.1E-26 203.1 21.8 214 330-558 4-241 (261)
41 KOG0742 AAA+-type ATPase [Post 99.9 1.1E-21 2.4E-26 205.8 19.9 244 327-582 350-619 (630)
42 PF00004 AAA: ATPase family as 99.9 6.4E-22 1.4E-26 178.6 13.8 130 368-502 1-132 (132)
43 KOG0743 AAA+-type ATPase [Post 99.9 7.7E-22 1.7E-26 210.8 16.0 207 328-547 197-412 (457)
44 PRK00080 ruvB Holliday junctio 99.8 7.4E-20 1.6E-24 193.1 20.3 215 327-575 20-250 (328)
45 TIGR00635 ruvB Holliday juncti 99.8 1E-19 2.2E-24 189.2 19.8 212 330-575 2-229 (305)
46 KOG0735 AAA+-type ATPase [Post 99.8 2.1E-19 4.5E-24 198.8 18.8 238 332-582 408-655 (952)
47 PF05496 RuvB_N: Holliday junc 99.8 1.2E-19 2.6E-24 180.5 14.0 195 324-552 16-226 (233)
48 KOG0744 AAA+-type ATPase [Post 99.8 1.3E-19 2.7E-24 186.2 14.2 241 331-575 141-414 (423)
49 COG0464 SpoVK ATPases of the A 99.8 2.6E-18 5.7E-23 190.8 21.7 220 351-578 4-229 (494)
50 TIGR02639 ClpA ATP-dependent C 99.8 1.7E-18 3.7E-23 200.7 19.3 226 328-579 178-433 (731)
51 KOG0736 Peroxisome assembly fa 99.8 2.9E-18 6.4E-23 191.3 19.1 206 362-576 428-654 (953)
52 TIGR02902 spore_lonB ATP-depen 99.8 3.1E-18 6.6E-23 191.9 17.4 217 322-574 55-331 (531)
53 COG2255 RuvB Holliday junction 99.8 9.7E-18 2.1E-22 170.3 18.3 216 327-576 21-252 (332)
54 COG2256 MGS1 ATPase related to 99.8 1.7E-17 3.6E-22 175.4 18.6 209 324-576 16-239 (436)
55 TIGR00763 lon ATP-dependent pr 99.8 1.7E-17 3.7E-22 193.5 20.1 164 332-516 320-505 (775)
56 PRK00149 dnaA chromosomal repl 99.8 2.7E-17 5.9E-22 180.9 19.0 225 326-576 116-350 (450)
57 PRK11034 clpA ATP-dependent Cl 99.7 4E-17 8.6E-22 188.7 20.9 225 329-579 183-437 (758)
58 TIGR00362 DnaA chromosomal rep 99.7 6.8E-17 1.5E-21 175.3 20.2 222 326-575 104-337 (405)
59 PRK14956 DNA polymerase III su 99.7 9.2E-17 2E-21 176.0 21.3 211 324-571 10-242 (484)
60 TIGR02928 orc1/cdc6 family rep 99.7 2.2E-16 4.7E-21 168.0 21.7 244 328-595 11-295 (365)
61 PRK14962 DNA polymerase III su 99.7 1.5E-16 3.2E-21 175.7 21.0 205 326-573 8-240 (472)
62 PRK00411 cdc6 cell division co 99.7 2.1E-16 4.5E-21 170.0 21.1 245 328-595 26-303 (394)
63 PRK04195 replication factor C 99.7 2.8E-16 6.1E-21 174.3 20.8 207 326-571 8-221 (482)
64 PRK14961 DNA polymerase III su 99.7 5.3E-16 1.1E-20 166.3 21.6 211 325-572 9-241 (363)
65 PRK13342 recombination factor 99.7 4.4E-16 9.4E-21 169.6 19.6 202 327-576 7-220 (413)
66 PRK14088 dnaA chromosomal repl 99.7 3E-16 6.4E-21 172.3 18.3 225 326-577 99-334 (440)
67 PRK06645 DNA polymerase III su 99.7 7.7E-16 1.7E-20 171.0 21.2 214 324-571 13-252 (507)
68 TIGR03345 VI_ClpV1 type VI sec 99.7 3.5E-16 7.5E-21 183.7 19.4 218 327-571 182-427 (852)
69 PRK14960 DNA polymerase III su 99.7 6.5E-16 1.4E-20 173.8 20.6 203 326-571 9-239 (702)
70 PRK12323 DNA polymerase III su 99.7 2.5E-16 5.5E-21 176.8 17.2 196 326-554 10-232 (700)
71 PRK07003 DNA polymerase III su 99.7 3.7E-16 8.1E-21 177.3 18.4 198 325-555 9-228 (830)
72 PRK06893 DNA replication initi 99.7 7.5E-16 1.6E-20 155.0 18.4 212 326-572 10-227 (229)
73 PRK14958 DNA polymerase III su 99.7 8.4E-16 1.8E-20 171.3 19.8 204 325-571 9-240 (509)
74 TIGR03420 DnaA_homol_Hda DnaA 99.7 8.2E-16 1.8E-20 152.6 17.1 206 327-572 10-225 (226)
75 PRK14086 dnaA chromosomal repl 99.7 1.2E-15 2.5E-20 171.5 19.9 224 326-575 282-515 (617)
76 PRK12402 replication factor C 99.7 2.2E-15 4.8E-20 158.1 21.0 209 326-573 9-247 (337)
77 PRK14963 DNA polymerase III su 99.7 2.3E-15 5E-20 167.5 21.0 203 325-571 7-236 (504)
78 PRK14964 DNA polymerase III su 99.7 2.1E-15 4.5E-20 166.7 20.1 202 327-571 8-237 (491)
79 PRK07994 DNA polymerase III su 99.7 2.1E-15 4.5E-20 171.1 20.2 208 327-571 11-240 (647)
80 PRK14949 DNA polymerase III su 99.7 3E-15 6.4E-20 172.8 21.5 195 325-552 9-225 (944)
81 PRK08903 DnaA regulatory inact 99.7 2.4E-15 5.3E-20 150.2 18.3 202 327-573 13-224 (227)
82 PLN03025 replication factor C 99.7 1.5E-15 3.2E-20 160.0 17.5 201 325-570 6-218 (319)
83 PRK12422 chromosomal replicati 99.7 2.9E-15 6.2E-20 164.6 19.9 230 326-576 105-344 (445)
84 TIGR02397 dnaX_nterm DNA polym 99.7 2.7E-15 5.8E-20 158.9 19.0 205 325-572 7-239 (355)
85 PRK05563 DNA polymerase III su 99.7 4E-15 8.7E-20 167.7 21.4 208 326-570 10-239 (559)
86 PRK08691 DNA polymerase III su 99.7 2.4E-15 5.1E-20 170.5 19.5 209 326-571 10-240 (709)
87 CHL00095 clpC Clp protease ATP 99.7 2.3E-15 5E-20 176.8 19.5 201 328-555 175-401 (821)
88 PRK14951 DNA polymerase III su 99.7 5.2E-15 1.1E-19 167.5 21.2 209 326-571 10-245 (618)
89 PRK08084 DNA replication initi 99.7 4.9E-15 1.1E-19 149.8 18.5 206 327-572 17-233 (235)
90 PHA02544 44 clamp loader, smal 99.6 5.2E-15 1.1E-19 154.7 18.7 204 324-568 13-224 (316)
91 PTZ00112 origin recognition co 99.6 4.8E-15 1E-19 169.0 19.2 238 331-595 754-1027(1164)
92 PRK13341 recombination factor 99.6 4.9E-15 1.1E-19 170.8 19.1 209 324-575 20-247 (725)
93 PRK14970 DNA polymerase III su 99.6 1E-14 2.2E-19 156.1 20.1 211 325-572 10-230 (367)
94 PRK10865 protein disaggregatio 99.6 5.1E-15 1.1E-19 174.2 19.3 165 328-518 174-356 (857)
95 PRK14969 DNA polymerase III su 99.6 6.5E-15 1.4E-19 164.9 19.3 209 327-572 11-241 (527)
96 PRK14087 dnaA chromosomal repl 99.6 9.5E-15 2.1E-19 160.8 19.8 222 328-575 111-348 (450)
97 PRK14959 DNA polymerase III su 99.6 1E-14 2.3E-19 164.4 19.3 205 324-571 8-240 (624)
98 PRK14957 DNA polymerase III su 99.6 1.3E-14 2.9E-19 162.2 20.0 209 326-571 10-240 (546)
99 TIGR03346 chaperone_ClpB ATP-d 99.6 1.1E-14 2.5E-19 171.5 20.1 203 327-556 168-397 (852)
100 PRK07764 DNA polymerase III su 99.6 1E-14 2.2E-19 170.1 19.2 207 326-568 9-239 (824)
101 PF00308 Bac_DnaA: Bacterial d 99.6 1E-14 2.2E-19 146.2 16.6 203 327-555 3-216 (219)
102 PRK14952 DNA polymerase III su 99.6 1.4E-14 2.9E-19 163.4 19.6 210 326-571 7-240 (584)
103 PRK07133 DNA polymerase III su 99.6 1.8E-14 3.9E-19 164.6 19.9 211 324-571 10-239 (725)
104 PRK08727 hypothetical protein; 99.6 3.1E-14 6.7E-19 143.7 19.4 210 326-574 13-230 (233)
105 PRK14965 DNA polymerase III su 99.6 1.6E-14 3.5E-19 163.4 19.2 209 326-571 10-240 (576)
106 PRK05896 DNA polymerase III su 99.6 1.8E-14 3.9E-19 161.8 18.8 210 325-571 9-240 (605)
107 COG1224 TIP49 DNA helicase TIP 99.6 1.5E-14 3.3E-19 150.8 16.7 104 472-579 321-436 (450)
108 PRK14955 DNA polymerase III su 99.6 1.5E-14 3.3E-19 156.9 17.5 216 324-572 8-254 (397)
109 PRK14953 DNA polymerase III su 99.6 4.1E-14 8.9E-19 157.0 21.1 209 326-571 10-240 (486)
110 PRK05642 DNA replication initi 99.6 5.6E-14 1.2E-18 142.0 19.8 211 326-572 13-232 (234)
111 PRK05342 clpX ATP-dependent pr 99.6 2E-14 4.2E-19 156.4 17.6 219 333-555 72-378 (412)
112 PRK06647 DNA polymerase III su 99.6 4.3E-14 9.2E-19 159.3 20.8 209 326-571 10-240 (563)
113 PRK08451 DNA polymerase III su 99.6 6.9E-14 1.5E-18 156.0 21.4 208 325-569 7-236 (535)
114 KOG2028 ATPase related to the 99.6 3E-14 6.6E-19 148.7 17.2 213 324-575 130-368 (554)
115 PRK10787 DNA-binding ATP-depen 99.6 2.3E-14 4.9E-19 166.9 17.8 163 333-517 323-507 (784)
116 PRK09111 DNA polymerase III su 99.6 6.2E-14 1.3E-18 158.8 20.7 212 324-572 16-254 (598)
117 PRK06305 DNA polymerase III su 99.6 7.1E-14 1.5E-18 154.0 20.6 210 325-571 10-242 (451)
118 PRK07940 DNA polymerase III su 99.6 3.3E-14 7.3E-19 153.9 17.5 187 330-544 3-211 (394)
119 COG0466 Lon ATP-dependent Lon 99.6 1.3E-14 2.8E-19 162.3 13.5 219 332-572 323-581 (782)
120 PRK14948 DNA polymerase III su 99.6 1.1E-13 2.3E-18 157.7 21.3 196 325-553 9-228 (620)
121 PRK00440 rfc replication facto 99.6 1.7E-13 3.6E-18 142.7 21.1 202 326-572 11-223 (319)
122 COG0593 DnaA ATPase involved i 99.6 1.2E-13 2.6E-18 148.9 20.3 244 324-594 79-359 (408)
123 KOG2004 Mitochondrial ATP-depe 99.6 2.4E-14 5.2E-19 159.4 14.7 163 332-517 411-597 (906)
124 PRK14954 DNA polymerase III su 99.6 1.4E-13 2.9E-18 156.4 21.2 214 326-572 10-254 (620)
125 PRK06620 hypothetical protein; 99.6 6.8E-14 1.5E-18 139.7 16.6 199 326-572 10-213 (214)
126 PRK14950 DNA polymerase III su 99.6 1.5E-13 3.3E-18 155.9 20.5 211 324-571 8-241 (585)
127 KOG0989 Replication factor C, 99.6 4E-14 8.7E-19 145.4 13.7 194 323-553 27-236 (346)
128 TIGR00390 hslU ATP-dependent p 99.6 5.6E-14 1.2E-18 151.5 15.5 240 333-578 13-433 (441)
129 PRK05201 hslU ATP-dependent pr 99.5 7.1E-14 1.5E-18 150.7 16.0 241 333-579 16-436 (443)
130 PRK13407 bchI magnesium chelat 99.5 6.6E-14 1.4E-18 148.4 15.1 218 327-577 3-308 (334)
131 TIGR02640 gas_vesic_GvpN gas v 99.5 2.9E-13 6.3E-18 139.0 18.3 184 366-578 22-260 (262)
132 COG1474 CDC6 Cdc6-related prot 99.5 2.8E-13 6.1E-18 145.4 18.5 241 329-594 14-285 (366)
133 PF05673 DUF815: Protein of un 99.5 4.4E-13 9.5E-18 135.3 18.3 194 326-550 21-244 (249)
134 TIGR00382 clpX endopeptidase C 99.5 1.8E-13 3.9E-18 148.6 16.4 220 333-556 78-385 (413)
135 TIGR02903 spore_lon_C ATP-depe 99.5 5.1E-13 1.1E-17 152.3 20.7 216 327-575 149-430 (615)
136 PRK11034 clpA ATP-dependent Cl 99.5 4.1E-13 8.8E-18 155.7 18.9 165 333-517 459-667 (758)
137 CHL00081 chlI Mg-protoporyphyr 99.5 3.1E-13 6.7E-18 143.9 16.4 226 326-580 11-327 (350)
138 COG2812 DnaX DNA polymerase II 99.5 4.6E-13 9.9E-18 148.1 17.1 196 327-555 11-228 (515)
139 PRK14971 DNA polymerase III su 99.5 1.5E-12 3.2E-17 148.3 21.1 208 327-571 12-242 (614)
140 PRK09087 hypothetical protein; 99.5 4.7E-13 1E-17 134.8 15.0 203 326-575 15-222 (226)
141 TIGR02030 BchI-ChlI magnesium 99.5 7.3E-13 1.6E-17 140.7 16.6 218 330-579 2-313 (337)
142 PF05621 TniB: Bacterial TniB 99.5 1.2E-12 2.6E-17 135.8 17.4 223 329-571 31-285 (302)
143 TIGR02639 ClpA ATP-dependent C 99.5 8.5E-13 1.8E-17 153.5 18.1 198 333-552 455-708 (731)
144 TIGR02442 Cob-chelat-sub cobal 99.4 1.5E-12 3.3E-17 149.1 16.8 218 330-580 2-309 (633)
145 cd00009 AAA The AAA+ (ATPases 99.4 4E-12 8.7E-17 114.3 14.5 121 364-501 18-150 (151)
146 KOG1942 DNA helicase, TBP-inte 99.4 8.7E-12 1.9E-16 127.4 17.5 134 425-580 297-443 (456)
147 PF06068 TIP49: TIP49 C-termin 99.4 9.8E-12 2.1E-16 131.6 15.7 69 328-403 20-90 (398)
148 TIGR03345 VI_ClpV1 type VI sec 99.4 1.6E-11 3.5E-16 144.6 18.4 195 332-551 566-826 (852)
149 COG3829 RocR Transcriptional r 99.4 6.7E-13 1.5E-17 145.4 6.3 214 326-573 239-496 (560)
150 TIGR00368 Mg chelatase-related 99.3 3E-11 6.5E-16 134.5 18.7 212 328-573 188-497 (499)
151 TIGR02329 propionate_PrpR prop 99.3 5.8E-12 1.3E-16 141.1 12.5 212 328-571 208-466 (526)
152 COG0714 MoxR-like ATPases [Gen 99.3 4.5E-11 9.8E-16 126.6 18.3 128 366-514 44-201 (329)
153 TIGR00764 lon_rel lon-related 99.3 2.6E-11 5.6E-16 138.2 17.5 102 470-575 267-391 (608)
154 PRK15424 propionate catabolism 99.3 5.6E-12 1.2E-16 141.3 11.9 210 329-569 216-479 (538)
155 TIGR03346 chaperone_ClpB ATP-d 99.3 4E-11 8.7E-16 141.7 19.2 203 332-555 565-825 (852)
156 PRK09112 DNA polymerase III su 99.3 6.9E-11 1.5E-15 126.4 18.3 189 327-550 18-243 (351)
157 CHL00095 clpC Clp protease ATP 99.3 5.3E-11 1.2E-15 140.2 18.6 166 332-518 509-734 (821)
158 KOG0741 AAA+-type ATPase [Post 99.3 4.3E-11 9.3E-16 130.1 15.8 144 364-514 537-684 (744)
159 PRK10865 protein disaggregatio 99.3 8E-11 1.7E-15 139.0 19.4 167 332-518 568-781 (857)
160 TIGR01817 nifA Nif-specific re 99.3 1.2E-11 2.7E-16 139.0 11.3 209 326-569 190-439 (534)
161 COG0542 clpA ATP-binding subun 99.3 2.9E-11 6.3E-16 138.7 14.3 196 332-550 491-749 (786)
162 PRK10820 DNA-binding transcrip 99.3 2.9E-11 6.4E-16 135.6 13.7 207 327-568 199-447 (520)
163 KOG2680 DNA helicase TIP49, TB 99.3 7.2E-11 1.6E-15 121.2 15.1 117 473-593 319-447 (454)
164 PRK07471 DNA polymerase III su 99.3 9.2E-11 2E-15 126.1 16.7 185 327-548 14-239 (365)
165 smart00350 MCM minichromosome 99.3 7.7E-11 1.7E-15 131.9 16.4 224 333-576 204-505 (509)
166 COG0542 clpA ATP-binding subun 99.3 1.3E-10 2.8E-15 133.4 18.4 206 327-558 165-396 (786)
167 PRK11608 pspF phage shock prot 99.3 3.8E-11 8.2E-16 127.2 13.1 193 331-555 5-240 (326)
168 PRK13531 regulatory ATPase Rav 99.3 1.7E-10 3.8E-15 126.8 18.5 216 333-580 21-288 (498)
169 PRK05022 anaerobic nitric oxid 99.3 4.3E-11 9.3E-16 134.0 13.7 208 330-569 185-437 (509)
170 TIGR03015 pepcterm_ATPase puta 99.3 4.9E-10 1.1E-14 114.2 20.3 192 366-575 44-266 (269)
171 PRK11388 DNA-binding transcrip 99.3 2.6E-11 5.6E-16 139.1 12.2 210 328-572 321-568 (638)
172 TIGR02974 phageshock_pspF psp 99.3 4.4E-11 9.5E-16 127.0 12.9 190 334-555 1-233 (329)
173 COG2607 Predicted ATPase (AAA+ 99.2 4.9E-10 1.1E-14 112.3 18.6 196 325-551 53-277 (287)
174 TIGR01650 PD_CobS cobaltochela 99.2 3.3E-11 7.1E-16 127.0 10.8 137 365-516 64-233 (327)
175 PRK05564 DNA polymerase III su 99.2 1.2E-10 2.7E-15 122.4 15.0 174 329-538 1-182 (313)
176 smart00382 AAA ATPases associa 99.2 3E-11 6.5E-16 107.2 8.6 126 365-503 2-147 (148)
177 PRK07399 DNA polymerase III su 99.2 2.3E-10 4.9E-15 120.8 15.6 184 330-550 2-224 (314)
178 COG1221 PspF Transcriptional r 99.2 4.2E-11 9E-16 129.1 10.2 198 327-556 73-310 (403)
179 PHA02244 ATPase-like protein 99.2 5.2E-10 1.1E-14 119.4 18.3 148 329-505 94-263 (383)
180 PRK09862 putative ATP-dependen 99.2 3.1E-10 6.8E-15 126.3 16.9 211 329-574 188-491 (506)
181 TIGR02031 BchD-ChlD magnesium 99.2 3.5E-10 7.5E-15 128.7 17.3 193 366-579 17-262 (589)
182 COG2204 AtoC Response regulato 99.2 1.1E-10 2.4E-15 127.8 12.6 206 329-569 138-385 (464)
183 TIGR00678 holB DNA polymerase 99.2 3.8E-10 8.2E-15 109.7 14.3 149 363-538 12-183 (188)
184 PF01078 Mg_chelatase: Magnesi 99.2 3.7E-11 7.9E-16 119.0 7.0 119 330-480 1-158 (206)
185 COG0470 HolB ATPase involved i 99.2 5E-10 1.1E-14 116.6 15.6 145 333-509 2-174 (325)
186 KOG1969 DNA replication checkp 99.2 7.9E-10 1.7E-14 124.2 17.6 208 324-560 263-520 (877)
187 PRK15429 formate hydrogenlyase 99.2 3.9E-10 8.5E-15 130.6 15.8 196 328-555 372-609 (686)
188 PRK04132 replication factor C 99.2 5E-10 1.1E-14 130.7 16.5 159 367-553 566-737 (846)
189 TIGR00602 rad24 checkpoint pro 99.1 1.1E-09 2.4E-14 124.8 16.7 206 324-556 76-329 (637)
190 PF07728 AAA_5: AAA domain (dy 99.1 8.2E-11 1.8E-15 108.4 6.2 109 367-494 1-139 (139)
191 PRK11331 5-methylcytosine-spec 99.1 8E-10 1.7E-14 120.8 14.8 155 331-502 174-357 (459)
192 COG0606 Predicted ATPase with 99.1 4.5E-10 9.7E-15 122.1 11.1 213 328-574 175-484 (490)
193 KOG2227 Pre-initiation complex 99.1 1.9E-09 4.1E-14 116.5 15.7 240 333-594 151-435 (529)
194 PRK08058 DNA polymerase III su 99.1 1.5E-09 3.4E-14 115.1 14.9 154 330-514 3-180 (329)
195 TIGR02915 PEP_resp_reg putativ 99.1 3.7E-10 8E-15 123.7 10.4 204 330-568 137-382 (445)
196 COG3604 FhlA Transcriptional r 99.1 4.5E-10 9.7E-15 122.2 9.9 197 327-555 218-456 (550)
197 PRK05707 DNA polymerase III su 99.0 2.4E-09 5.1E-14 113.7 14.1 152 362-538 19-195 (328)
198 COG1219 ClpX ATP-dependent pro 99.0 5.6E-10 1.2E-14 115.6 8.8 128 333-466 62-203 (408)
199 COG1220 HslU ATP-dependent pro 99.0 1.8E-09 3.9E-14 112.6 12.0 83 426-513 252-346 (444)
200 COG1239 ChlI Mg-chelatase subu 99.0 6E-09 1.3E-13 112.0 16.3 221 328-580 13-327 (423)
201 PRK08116 hypothetical protein; 99.0 2.4E-09 5.3E-14 110.6 12.2 156 328-505 81-251 (268)
202 KOG0991 Replication factor C, 99.0 1.5E-09 3.2E-14 108.4 10.1 186 324-552 19-216 (333)
203 PF07724 AAA_2: AAA domain (Cd 99.0 5.6E-10 1.2E-14 108.0 6.6 113 364-482 2-131 (171)
204 PF00158 Sigma54_activat: Sigm 99.0 5.6E-10 1.2E-14 107.6 6.2 131 334-495 1-155 (168)
205 PRK10923 glnG nitrogen regulat 99.0 2.6E-09 5.7E-14 117.9 11.9 208 330-572 136-385 (469)
206 PRK11361 acetoacetate metaboli 99.0 2.6E-09 5.7E-14 117.2 10.7 208 330-572 141-390 (457)
207 KOG1514 Origin recognition com 98.9 1E-08 2.2E-13 115.3 14.7 238 334-594 398-675 (767)
208 smart00763 AAA_PrkA PrkA AAA d 98.9 1.4E-08 3.1E-13 108.4 15.2 81 330-417 48-141 (361)
209 PTZ00111 DNA replication licen 98.9 1.9E-08 4.1E-13 117.5 16.2 159 333-511 451-652 (915)
210 PF13177 DNA_pol3_delta2: DNA 98.9 8.2E-09 1.8E-13 98.8 10.5 137 336-503 1-161 (162)
211 PRK13765 ATP-dependent proteas 98.9 1.4E-08 3E-13 116.1 13.7 102 471-574 277-399 (637)
212 PRK15115 response regulator Gl 98.9 8.8E-09 1.9E-13 112.8 11.4 182 366-572 158-381 (444)
213 KOG0732 AAA+-type ATPase conta 98.9 5.1E-09 1.1E-13 122.8 9.3 201 239-441 405-670 (1080)
214 TIGR01818 ntrC nitrogen regula 98.8 1.6E-08 3.4E-13 111.3 11.3 206 332-572 134-381 (463)
215 PRK06964 DNA polymerase III su 98.8 2.3E-08 4.9E-13 106.8 12.0 134 362-515 18-203 (342)
216 PRK13406 bchD magnesium chelat 98.8 3E-08 6.6E-13 112.5 13.7 194 366-580 26-255 (584)
217 PRK07952 DNA replication prote 98.8 5E-08 1.1E-12 99.6 13.8 132 327-481 67-205 (244)
218 PF01637 Arch_ATPase: Archaeal 98.8 3.3E-08 7.2E-13 97.0 12.0 184 335-545 2-232 (234)
219 PRK06871 DNA polymerase III su 98.8 1.1E-07 2.3E-12 101.0 16.3 134 362-515 21-178 (325)
220 PRK10365 transcriptional regul 98.8 2.4E-08 5.1E-13 109.1 9.9 205 333-572 140-386 (441)
221 PRK12377 putative replication 98.8 6.7E-08 1.5E-12 98.9 12.5 70 365-436 101-175 (248)
222 KOG0745 Putative ATP-dependent 98.8 2.6E-08 5.6E-13 106.9 9.5 99 366-465 227-331 (564)
223 PRK08769 DNA polymerase III su 98.8 6.5E-08 1.4E-12 102.4 12.5 133 362-514 23-183 (319)
224 PF14532 Sigma54_activ_2: Sigm 98.7 7.5E-09 1.6E-13 96.0 4.6 81 335-439 1-84 (138)
225 PRK07993 DNA polymerase III su 98.7 1.5E-07 3.3E-12 100.2 14.4 133 362-514 21-178 (334)
226 PF07726 AAA_3: ATPase family 98.7 3.3E-09 7.1E-14 97.7 0.7 112 367-495 1-130 (131)
227 KOG0990 Replication factor C, 98.7 9.2E-08 2E-12 99.6 11.1 190 323-551 32-233 (360)
228 PRK08939 primosomal protein Dn 98.7 1.5E-07 3.2E-12 99.2 12.6 132 329-481 124-261 (306)
229 PRK08181 transposase; Validate 98.7 1.1E-07 2.4E-12 98.4 10.7 71 365-437 106-180 (269)
230 PRK06090 DNA polymerase III su 98.6 3.1E-07 6.7E-12 97.2 13.6 133 362-514 22-178 (319)
231 PRK06526 transposase; Provisio 98.6 1.4E-07 2.9E-12 97.0 10.2 100 365-481 98-201 (254)
232 PF03215 Rad17: Rad17 cell cyc 98.6 9.3E-07 2E-11 99.3 17.2 209 324-556 11-269 (519)
233 PRK06835 DNA replication prote 98.6 1.9E-07 4.2E-12 99.2 10.3 69 366-436 184-258 (329)
234 COG1484 DnaC DNA replication p 98.6 2.1E-07 4.5E-12 95.6 9.0 73 364-437 104-180 (254)
235 KOG1051 Chaperone HSP104 and r 98.5 4.4E-07 9.6E-12 106.1 12.4 126 333-480 563-710 (898)
236 PF13401 AAA_22: AAA domain; P 98.5 2.9E-07 6.2E-12 83.2 8.7 98 365-478 4-125 (131)
237 PF13173 AAA_14: AAA domain 98.5 4.1E-07 8.8E-12 83.3 9.7 70 366-437 3-74 (128)
238 PRK09183 transposase/IS protei 98.5 1.5E-07 3.3E-12 96.8 7.4 72 365-437 102-177 (259)
239 KOG2035 Replication factor C, 98.5 9.4E-07 2E-11 90.6 12.7 173 328-538 9-220 (351)
240 PRK08699 DNA polymerase III su 98.5 4.2E-07 9.2E-12 96.5 10.0 132 363-514 19-183 (325)
241 PF01695 IstB_IS21: IstB-like 98.5 1E-07 2.2E-12 92.8 4.4 70 364-435 46-119 (178)
242 COG3284 AcoR Transcriptional a 98.5 1.2E-07 2.6E-12 106.2 4.7 203 335-572 316-554 (606)
243 PRK06921 hypothetical protein; 98.5 5.5E-07 1.2E-11 93.1 9.2 69 364-435 116-188 (266)
244 COG3283 TyrR Transcriptional r 98.4 2.8E-06 6.2E-11 89.7 13.4 197 327-555 199-432 (511)
245 KOG0478 DNA replication licens 98.4 2.8E-06 6.2E-11 95.6 13.1 203 364-574 461-723 (804)
246 KOG1970 Checkpoint RAD17-RFC c 98.4 1.5E-05 3.2E-10 88.3 18.0 174 366-555 111-320 (634)
247 PF05729 NACHT: NACHT domain 98.3 5.4E-06 1.2E-10 77.2 11.7 141 367-518 2-165 (166)
248 KOG0482 DNA replication licens 98.3 1E-06 2.2E-11 96.1 7.6 231 333-577 343-640 (721)
249 PF00493 MCM: MCM2/3/5 family 98.3 9.3E-08 2E-12 101.8 -0.4 223 333-576 25-327 (331)
250 PF03969 AFG1_ATPase: AFG1-lik 98.3 3.5E-06 7.6E-11 90.8 11.3 103 362-481 59-168 (362)
251 cd01120 RecA-like_NTPases RecA 98.3 4.5E-06 9.8E-11 77.1 10.1 109 368-481 2-137 (165)
252 PLN03210 Resistant to P. syrin 98.3 1.2E-05 2.5E-10 98.8 16.0 180 327-541 179-390 (1153)
253 KOG0480 DNA replication licens 98.3 2.6E-06 5.7E-11 95.2 9.3 224 331-575 344-643 (764)
254 COG3267 ExeA Type II secretory 98.2 3.2E-05 7E-10 78.8 15.5 188 367-569 53-267 (269)
255 COG1241 MCM2 Predicted ATPase 98.2 4.2E-06 9E-11 96.0 9.2 221 333-576 287-593 (682)
256 PF12775 AAA_7: P-loop contain 98.2 2.7E-06 5.8E-11 88.3 7.0 133 366-517 34-194 (272)
257 PRK05917 DNA polymerase III su 98.1 1.2E-05 2.6E-10 84.1 10.5 122 362-503 16-154 (290)
258 TIGR02237 recomb_radB DNA repa 98.1 7.8E-06 1.7E-10 80.6 8.7 115 361-479 8-148 (209)
259 PF00931 NB-ARC: NB-ARC domain 98.1 2.9E-05 6.3E-10 79.7 12.8 174 343-547 4-202 (287)
260 PRK05818 DNA polymerase III su 98.1 5.7E-05 1.2E-09 77.7 14.2 121 363-503 5-147 (261)
261 PRK07276 DNA polymerase III su 98.0 0.0001 2.3E-09 77.2 14.8 129 362-513 21-172 (290)
262 PRK07132 DNA polymerase III su 98.0 0.00012 2.6E-09 77.0 15.2 127 363-514 16-160 (299)
263 KOG0481 DNA replication licens 98.0 3.5E-05 7.6E-10 84.6 11.1 234 333-578 332-642 (729)
264 KOG0477 DNA replication licens 98.0 2.1E-05 4.6E-10 87.9 9.1 228 333-576 450-758 (854)
265 PF13191 AAA_16: AAA ATPase do 98.0 1.4E-05 3E-10 76.2 6.4 59 334-401 2-63 (185)
266 cd01124 KaiC KaiC is a circadi 97.9 6.8E-05 1.5E-09 72.0 11.0 71 368-438 2-109 (187)
267 KOG1051 Chaperone HSP104 and r 97.9 5.8E-05 1.3E-09 88.7 12.1 178 366-557 209-412 (898)
268 TIGR01618 phage_P_loop phage n 97.9 2E-05 4.2E-10 79.5 6.9 73 364-438 11-95 (220)
269 PF12774 AAA_6: Hydrolytic ATP 97.9 0.00014 2.9E-09 74.0 12.3 129 366-512 33-176 (231)
270 KOG1968 Replication factor C, 97.9 1.5E-05 3.4E-10 93.9 5.9 205 327-554 315-535 (871)
271 PF00910 RNA_helicase: RNA hel 97.9 4.1E-05 8.8E-10 68.2 7.2 23 368-390 1-23 (107)
272 COG1485 Predicted ATPase [Gene 97.9 8.2E-05 1.8E-09 79.0 10.5 130 337-484 30-175 (367)
273 PRK09361 radB DNA repair and r 97.8 7.1E-05 1.5E-09 74.8 9.4 78 361-439 19-122 (225)
274 PRK11823 DNA repair protein Ra 97.8 9.2E-05 2E-09 82.1 10.8 103 361-464 76-195 (446)
275 PHA00729 NTP-binding motif con 97.8 5.1E-05 1.1E-09 76.6 7.7 24 367-390 19-42 (226)
276 PRK00131 aroK shikimate kinase 97.8 6.9E-05 1.5E-09 70.8 8.0 41 363-405 2-42 (175)
277 cd01121 Sms Sms (bacterial rad 97.8 0.00011 2.3E-09 79.7 10.4 79 361-439 78-173 (372)
278 TIGR02688 conserved hypothetic 97.8 0.0002 4.3E-09 78.3 12.3 200 339-578 194-436 (449)
279 TIGR02012 tigrfam_recA protein 97.8 0.00011 2.3E-09 78.2 10.0 119 361-479 51-190 (321)
280 TIGR02858 spore_III_AA stage I 97.7 0.00013 2.9E-09 75.7 8.9 114 366-501 112-256 (270)
281 PRK08533 flagellar accessory p 97.7 0.00024 5.3E-09 71.9 10.5 77 361-437 20-130 (230)
282 PRK06067 flagellar accessory p 97.7 0.00022 4.7E-09 71.9 10.0 39 361-399 21-62 (234)
283 cd01394 radB RadB. The archaea 97.7 0.0002 4.3E-09 71.1 9.6 39 361-399 15-56 (218)
284 PRK13949 shikimate kinase; Pro 97.7 0.00042 9.1E-09 66.9 11.5 32 366-397 2-33 (169)
285 PF05707 Zot: Zonular occluden 97.7 4.6E-05 9.9E-10 74.9 4.7 120 368-503 3-146 (193)
286 PRK00771 signal recognition pa 97.7 0.00059 1.3E-08 75.5 13.7 194 363-575 93-332 (437)
287 PRK08118 topology modulation p 97.7 7.9E-05 1.7E-09 71.8 6.1 32 367-398 3-34 (167)
288 PF13207 AAA_17: AAA domain; P 97.6 3.3E-05 7.2E-10 69.1 3.1 30 368-397 2-31 (121)
289 COG1618 Predicted nucleotide k 97.6 0.0003 6.5E-09 67.4 9.5 26 364-389 4-29 (179)
290 cd00983 recA RecA is a bacter 97.6 0.0002 4.3E-09 76.2 9.0 119 361-479 51-190 (325)
291 COG1373 Predicted ATPase (AAA+ 97.6 0.00094 2E-08 73.1 14.4 135 367-523 39-187 (398)
292 PF13671 AAA_33: AAA domain; P 97.5 0.00022 4.7E-09 65.5 7.2 37 368-406 2-38 (143)
293 PRK14532 adenylate kinase; Pro 97.5 0.0003 6.6E-09 68.2 8.5 36 367-404 2-37 (188)
294 PF14516 AAA_35: AAA-like doma 97.5 0.004 8.8E-08 66.4 17.8 164 365-539 31-232 (331)
295 cd03283 ABC_MutS-like MutS-lik 97.5 0.0004 8.7E-09 68.8 9.3 104 366-484 26-151 (199)
296 cd00046 DEXDc DEAD-like helica 97.5 0.00057 1.2E-08 60.3 9.3 24 366-389 1-24 (144)
297 cd01393 recA_like RecA is a b 97.5 0.00026 5.6E-09 70.5 7.6 116 361-478 15-166 (226)
298 PRK07261 topology modulation p 97.5 0.00015 3.4E-09 69.9 5.8 31 368-398 3-33 (171)
299 cd01123 Rad51_DMC1_radA Rad51_ 97.5 0.00037 7.9E-09 69.8 8.4 117 361-479 15-168 (235)
300 PF13604 AAA_30: AAA domain; P 97.5 0.00042 9.2E-09 68.4 8.5 97 367-480 20-132 (196)
301 cd01128 rho_factor Transcripti 97.5 0.0011 2.4E-08 68.1 11.7 27 365-391 16-42 (249)
302 PRK12723 flagellar biosynthesi 97.5 0.0018 3.9E-08 70.7 13.8 163 364-543 173-374 (388)
303 TIGR03877 thermo_KaiC_1 KaiC d 97.4 0.0011 2.4E-08 67.2 11.5 39 361-399 17-58 (237)
304 PRK10536 hypothetical protein; 97.4 0.00071 1.5E-08 69.7 10.1 46 329-388 52-97 (262)
305 COG0703 AroK Shikimate kinase 97.4 0.00036 7.9E-09 67.7 7.5 40 366-407 3-42 (172)
306 PRK04296 thymidine kinase; Pro 97.4 0.00053 1.2E-08 67.3 8.8 70 367-436 4-90 (190)
307 PRK14722 flhF flagellar biosyn 97.4 0.00033 7.1E-09 75.9 7.9 111 363-489 135-267 (374)
308 KOG2170 ATPase of the AAA+ sup 97.4 0.0031 6.7E-08 66.0 14.4 96 333-437 83-191 (344)
309 KOG2383 Predicted ATPase [Gene 97.4 0.0011 2.3E-08 71.6 11.3 28 362-389 111-138 (467)
310 PRK06762 hypothetical protein; 97.4 0.00052 1.1E-08 65.1 8.2 41 365-405 2-42 (166)
311 PTZ00202 tuzin; Provisional 97.4 0.013 2.9E-07 64.6 19.8 62 329-399 259-320 (550)
312 TIGR00416 sms DNA repair prote 97.4 0.00094 2E-08 74.3 11.3 78 361-438 90-184 (454)
313 PRK15455 PrkA family serine pr 97.4 0.00016 3.5E-09 81.5 5.2 64 329-398 73-137 (644)
314 PF00437 T2SE: Type II/IV secr 97.4 0.00012 2.7E-09 75.2 4.0 98 327-434 99-207 (270)
315 COG4650 RtcR Sigma54-dependent 97.4 0.00042 9.1E-09 72.0 7.6 190 362-575 205-443 (531)
316 PRK13948 shikimate kinase; Pro 97.4 0.00054 1.2E-08 67.2 8.0 43 363-407 8-50 (182)
317 PF06309 Torsin: Torsin; Inte 97.4 0.00062 1.3E-08 62.9 7.5 51 333-389 26-77 (127)
318 PF06745 KaiC: KaiC; InterPro 97.3 0.0008 1.7E-08 67.2 8.8 97 361-464 15-148 (226)
319 PRK09376 rho transcription ter 97.3 0.00082 1.8E-08 73.1 9.4 23 368-390 172-194 (416)
320 PF06480 FtsH_ext: FtsH Extrac 97.3 0.00012 2.6E-09 64.0 2.4 30 179-208 26-55 (110)
321 COG0563 Adk Adenylate kinase a 97.3 0.00088 1.9E-08 65.4 8.6 35 367-403 2-36 (178)
322 cd03216 ABC_Carb_Monos_I This 97.3 0.00058 1.3E-08 65.2 7.0 105 362-481 23-142 (163)
323 cd01131 PilT Pilus retraction 97.3 0.00033 7.1E-09 69.2 5.5 67 367-433 3-83 (198)
324 cd00464 SK Shikimate kinase (S 97.3 0.00043 9.3E-09 64.3 5.8 39 367-407 1-39 (154)
325 PRK12339 2-phosphoglycerate ki 97.3 0.0043 9.2E-08 61.6 13.2 30 365-394 3-32 (197)
326 cd01130 VirB11-like_ATPase Typ 97.3 0.00031 6.7E-09 68.5 5.1 71 364-434 24-110 (186)
327 PRK14974 cell division protein 97.3 0.0016 3.5E-08 69.8 10.8 73 364-436 139-234 (336)
328 PRK13946 shikimate kinase; Pro 97.2 0.00093 2E-08 65.0 8.0 34 364-397 9-42 (184)
329 PF07693 KAP_NTPase: KAP famil 97.2 0.0086 1.9E-07 62.7 15.8 78 424-518 172-265 (325)
330 TIGR01420 pilT_fam pilus retra 97.2 0.00059 1.3E-08 73.1 7.1 69 366-434 123-205 (343)
331 PRK13947 shikimate kinase; Pro 97.2 0.00027 5.9E-09 67.2 4.1 31 367-397 3-33 (171)
332 cd01122 GP4d_helicase GP4d_hel 97.2 0.0012 2.6E-08 67.7 9.0 38 361-398 26-67 (271)
333 PLN02674 adenylate kinase 97.2 0.0015 3.2E-08 67.0 9.6 40 363-404 29-68 (244)
334 PRK09354 recA recombinase A; P 97.2 0.0013 2.7E-08 70.7 9.4 78 361-438 56-152 (349)
335 KOG2228 Origin recognition com 97.2 0.0027 5.9E-08 67.3 11.2 159 334-516 26-219 (408)
336 PRK03839 putative kinase; Prov 97.2 0.00028 6.1E-09 68.0 3.6 31 367-397 2-32 (180)
337 PRK04841 transcriptional regul 97.2 0.0046 1E-07 73.6 14.6 151 366-540 33-219 (903)
338 PF10236 DAP3: Mitochondrial r 97.2 0.016 3.5E-07 61.3 17.0 132 414-546 143-308 (309)
339 TIGR03574 selen_PSTK L-seryl-t 97.2 0.0018 3.9E-08 65.9 9.5 36 368-403 2-40 (249)
340 TIGR02782 TrbB_P P-type conjug 97.2 0.00032 6.8E-09 73.9 4.0 70 365-434 132-214 (299)
341 cd00227 CPT Chloramphenicol (C 97.2 0.0004 8.7E-09 66.9 4.3 39 366-404 3-41 (175)
342 PRK00625 shikimate kinase; Pro 97.2 0.00036 7.7E-09 67.8 3.9 31 367-397 2-32 (173)
343 PRK10867 signal recognition pa 97.1 0.007 1.5E-07 67.0 14.3 198 362-575 97-340 (433)
344 cd02020 CMPK Cytidine monophos 97.1 0.0012 2.5E-08 60.7 7.0 30 368-397 2-31 (147)
345 TIGR03881 KaiC_arch_4 KaiC dom 97.1 0.004 8.8E-08 62.2 11.4 38 361-398 16-56 (229)
346 PRK14527 adenylate kinase; Pro 97.1 0.0016 3.5E-08 63.6 8.3 34 363-396 4-37 (191)
347 PRK05973 replicative DNA helic 97.1 0.0042 9.1E-08 63.4 11.5 39 361-399 60-101 (237)
348 TIGR01359 UMP_CMP_kin_fam UMP- 97.1 0.00039 8.4E-09 66.9 3.8 35 368-404 2-36 (183)
349 COG4178 ABC-type uncharacteriz 97.1 0.0013 2.9E-08 74.7 8.4 28 361-388 415-442 (604)
350 cd00984 DnaB_C DnaB helicase C 97.1 0.0018 3.8E-08 65.1 8.5 38 361-398 9-50 (242)
351 cd03281 ABC_MSH5_euk MutS5 hom 97.1 0.0034 7.3E-08 62.9 10.4 23 365-387 29-51 (213)
352 TIGR03880 KaiC_arch_3 KaiC dom 97.1 0.0046 9.9E-08 61.8 11.3 39 361-399 12-53 (224)
353 KOG3347 Predicted nucleotide k 97.1 0.00041 9E-09 65.7 3.5 33 365-397 7-39 (176)
354 PRK09519 recA DNA recombinatio 97.1 0.0021 4.6E-08 75.4 10.0 119 361-479 56-195 (790)
355 KOG2543 Origin recognition com 97.1 0.0086 1.9E-07 64.5 13.7 158 333-514 7-191 (438)
356 PRK08154 anaerobic benzoate ca 97.1 0.0017 3.7E-08 68.6 8.4 35 362-396 130-164 (309)
357 PRK13900 type IV secretion sys 97.1 0.00056 1.2E-08 73.1 4.8 71 364-434 159-245 (332)
358 TIGR03878 thermo_KaiC_2 KaiC d 97.1 0.0037 8E-08 64.4 10.6 38 361-398 32-72 (259)
359 cd01129 PulE-GspE PulE/GspE Th 97.1 0.0014 3.1E-08 67.8 7.5 93 329-434 57-159 (264)
360 cd03238 ABC_UvrA The excision 97.1 0.009 2E-07 58.2 12.6 117 363-502 19-163 (176)
361 PRK05800 cobU adenosylcobinami 97.0 0.0036 7.8E-08 60.6 9.7 95 367-465 3-114 (170)
362 COG4619 ABC-type uncharacteriz 97.0 0.0056 1.2E-07 59.5 10.7 26 363-388 27-52 (223)
363 cd00544 CobU Adenosylcobinamid 97.0 0.0029 6.3E-08 61.3 9.0 96 368-465 2-114 (169)
364 PRK04328 hypothetical protein; 97.0 0.0056 1.2E-07 62.7 11.5 38 361-398 19-59 (249)
365 PRK14531 adenylate kinase; Pro 97.0 0.00058 1.3E-08 66.4 4.0 31 366-396 3-33 (183)
366 COG5271 MDN1 AAA ATPase contai 97.0 0.0021 4.6E-08 78.5 9.1 135 365-516 1543-1703(4600)
367 PRK13851 type IV secretion sys 97.0 0.0007 1.5E-08 72.7 4.7 73 362-434 159-246 (344)
368 TIGR02238 recomb_DMC1 meiotic 97.0 0.0022 4.8E-08 68.0 8.4 116 361-478 92-243 (313)
369 PRK04301 radA DNA repair and r 97.0 0.0024 5.1E-08 67.6 8.6 117 361-479 98-251 (317)
370 cd01428 ADK Adenylate kinase ( 97.0 0.00059 1.3E-08 65.9 3.7 34 368-403 2-35 (194)
371 PF03266 NTPase_1: NTPase; In 97.0 0.00065 1.4E-08 65.7 3.9 23 367-389 1-23 (168)
372 PRK06217 hypothetical protein; 97.0 0.00066 1.4E-08 65.9 3.9 31 367-397 3-33 (183)
373 TIGR02788 VirB11 P-type DNA tr 97.0 0.00092 2E-08 70.6 5.3 73 362-434 141-228 (308)
374 PRK04040 adenylate kinase; Pro 97.0 0.0045 9.9E-08 60.8 9.8 31 365-395 2-34 (188)
375 TIGR02655 circ_KaiC circadian 97.0 0.0048 1E-07 69.2 11.2 78 361-438 259-367 (484)
376 TIGR02236 recomb_radA DNA repa 96.9 0.0034 7.3E-08 66.1 9.3 117 361-479 91-245 (310)
377 PTZ00088 adenylate kinase 1; P 96.9 0.00084 1.8E-08 68.1 4.5 34 364-397 5-38 (229)
378 PRK06696 uridine kinase; Valid 96.9 0.0012 2.5E-08 66.4 5.4 39 364-402 21-62 (223)
379 PRK13833 conjugal transfer pro 96.9 0.0011 2.3E-08 70.7 5.3 69 365-433 144-224 (323)
380 cd02021 GntK Gluconate kinase 96.9 0.00073 1.6E-08 62.9 3.6 28 368-395 2-29 (150)
381 PRK00279 adk adenylate kinase; 96.9 0.0019 4.2E-08 64.2 6.8 29 368-396 3-31 (215)
382 PRK13894 conjugal transfer ATP 96.9 0.001 2.2E-08 70.7 5.1 70 365-434 148-229 (319)
383 cd03221 ABCF_EF-3 ABCF_EF-3 E 96.9 0.005 1.1E-07 57.6 9.2 71 363-435 24-99 (144)
384 PLN02200 adenylate kinase fami 96.9 0.00083 1.8E-08 68.3 4.2 41 362-404 40-80 (234)
385 PHA02774 E1; Provisional 96.9 0.0033 7.2E-08 71.2 9.2 33 365-397 434-467 (613)
386 cd00267 ABC_ATPase ABC (ATP-bi 96.9 0.0024 5.3E-08 60.1 7.1 73 363-435 23-109 (157)
387 PRK11889 flhF flagellar biosyn 96.9 0.0064 1.4E-07 66.4 11.0 105 364-481 240-364 (436)
388 PF05272 VirE: Virulence-assoc 96.9 0.0048 1E-07 61.3 9.3 111 361-502 48-169 (198)
389 cd03223 ABCD_peroxisomal_ALDP 96.9 0.0058 1.3E-07 58.5 9.6 74 362-435 24-120 (166)
390 PHA02624 large T antigen; Prov 96.9 0.0023 5E-08 72.8 7.8 122 361-502 427-561 (647)
391 PRK14530 adenylate kinase; Pro 96.9 0.00087 1.9E-08 66.7 4.0 30 367-396 5-34 (215)
392 cd02027 APSK Adenosine 5'-phos 96.9 0.0031 6.8E-08 59.4 7.6 36 368-403 2-40 (149)
393 PF04665 Pox_A32: Poxvirus A32 96.9 0.019 4E-07 58.9 13.6 132 364-515 12-169 (241)
394 PLN03187 meiotic recombination 96.9 0.0026 5.5E-08 68.4 7.7 116 361-478 122-273 (344)
395 smart00534 MUTSac ATPase domai 96.9 0.0077 1.7E-07 58.7 10.4 19 368-386 2-20 (185)
396 TIGR01313 therm_gnt_kin carboh 96.9 0.00085 1.8E-08 63.4 3.5 32 368-401 1-32 (163)
397 PRK13764 ATPase; Provisional 96.9 0.0011 2.5E-08 75.7 5.1 70 365-435 257-335 (602)
398 cd03246 ABCC_Protease_Secretio 96.9 0.0045 9.8E-08 59.4 8.5 103 364-481 27-156 (173)
399 COG2274 SunT ABC-type bacterio 96.8 0.005 1.1E-07 72.0 10.4 69 411-502 614-682 (709)
400 cd03247 ABCC_cytochrome_bd The 96.8 0.015 3.2E-07 56.1 12.0 28 362-389 25-52 (178)
401 TIGR02525 plasmid_TraJ plasmid 96.8 0.0019 4.2E-08 70.0 6.4 68 367-434 151-235 (372)
402 cd03243 ABC_MutS_homologs The 96.8 0.0042 9.1E-08 61.2 8.3 22 366-387 30-51 (202)
403 PRK08233 hypothetical protein; 96.8 0.0035 7.7E-08 59.8 7.6 32 366-397 4-36 (182)
404 PF01745 IPT: Isopentenyl tran 96.8 0.0014 3E-08 65.7 4.8 134 367-518 3-141 (233)
405 cd03228 ABCC_MRP_Like The MRP 96.8 0.0047 1E-07 59.2 8.4 28 362-389 25-52 (171)
406 PRK13808 adenylate kinase; Pro 96.8 0.0059 1.3E-07 65.3 9.8 34 368-403 3-36 (333)
407 PRK06547 hypothetical protein; 96.8 0.0012 2.5E-08 64.1 4.1 34 363-396 13-46 (172)
408 PF00448 SRP54: SRP54-type pro 96.8 0.0029 6.4E-08 62.6 7.0 130 365-508 1-155 (196)
409 PRK12724 flagellar biosynthesi 96.8 0.012 2.6E-07 64.8 12.3 113 364-489 222-354 (432)
410 PRK14730 coaE dephospho-CoA ki 96.8 0.0091 2E-07 59.0 10.4 41 367-409 3-43 (195)
411 PRK03731 aroL shikimate kinase 96.8 0.0012 2.6E-08 63.0 4.0 32 366-397 3-34 (171)
412 COG3854 SpoIIIAA ncharacterize 96.8 0.0028 6.2E-08 64.1 6.7 70 366-435 138-229 (308)
413 PHA02530 pseT polynucleotide k 96.8 0.0034 7.3E-08 65.4 7.6 39 365-404 2-40 (300)
414 smart00487 DEXDc DEAD-like hel 96.8 0.011 2.3E-07 55.6 10.4 23 366-388 25-48 (201)
415 PRK05057 aroK shikimate kinase 96.8 0.0013 2.8E-08 63.6 4.1 34 365-398 4-37 (172)
416 TIGR00959 ffh signal recogniti 96.8 0.032 7E-07 61.7 15.5 197 363-575 97-339 (428)
417 cd03280 ABC_MutS2 MutS2 homolo 96.8 0.0077 1.7E-07 59.4 9.7 20 367-386 30-49 (200)
418 cd03227 ABC_Class2 ABC-type Cl 96.8 0.009 1.9E-07 56.9 9.8 22 365-386 21-42 (162)
419 PRK14528 adenylate kinase; Pro 96.8 0.0012 2.6E-08 64.5 3.8 31 366-396 2-32 (186)
420 PTZ00035 Rad51 protein; Provis 96.8 0.0052 1.1E-07 65.9 8.9 116 361-478 114-265 (337)
421 PF06414 Zeta_toxin: Zeta toxi 96.8 0.0032 7E-08 61.9 6.9 42 363-404 13-55 (199)
422 COG1116 TauB ABC-type nitrate/ 96.8 0.0076 1.6E-07 61.6 9.6 24 365-388 29-52 (248)
423 PF13521 AAA_28: AAA domain; P 96.8 0.0023 5E-08 60.7 5.6 35 368-403 2-36 (163)
424 PRK14529 adenylate kinase; Pro 96.7 0.0052 1.1E-07 62.2 8.1 35 367-403 2-36 (223)
425 PF08423 Rad51: Rad51; InterP 96.7 0.003 6.6E-08 65.1 6.5 116 368-485 41-192 (256)
426 PRK02496 adk adenylate kinase; 96.7 0.0013 2.8E-08 63.6 3.6 30 367-396 3-32 (184)
427 PRK10416 signal recognition pa 96.7 0.014 3.1E-07 62.1 11.7 37 363-399 112-151 (318)
428 cd03115 SRP The signal recogni 96.7 0.0075 1.6E-07 57.6 8.7 32 368-399 3-37 (173)
429 PF09848 DUF2075: Uncharacteri 96.7 0.0042 9.2E-08 66.7 7.8 23 367-389 3-25 (352)
430 PRK13695 putative NTPase; Prov 96.7 0.01 2.2E-07 57.0 9.7 23 367-389 2-24 (174)
431 PRK05703 flhF flagellar biosyn 96.7 0.011 2.3E-07 65.5 11.0 36 365-400 221-261 (424)
432 PLN03186 DNA repair protein RA 96.7 0.0047 1E-07 66.4 8.0 118 361-480 119-272 (342)
433 TIGR01351 adk adenylate kinase 96.7 0.0014 3E-08 65.0 3.7 34 368-403 2-35 (210)
434 TIGR01360 aden_kin_iso1 adenyl 96.7 0.0015 3.2E-08 62.8 3.7 34 367-402 5-38 (188)
435 TIGR02655 circ_KaiC circadian 96.7 0.012 2.6E-07 66.1 11.4 39 361-399 17-59 (484)
436 TIGR00152 dephospho-CoA kinase 96.7 0.011 2.4E-07 57.5 9.8 41 368-410 2-42 (188)
437 TIGR01526 nadR_NMN_Atrans nico 96.6 0.0045 9.8E-08 66.0 7.5 70 366-436 163-243 (325)
438 PRK12338 hypothetical protein; 96.6 0.027 6E-07 59.9 13.2 31 364-394 3-33 (319)
439 PRK08099 bifunctional DNA-bind 96.6 0.0044 9.6E-08 67.9 7.5 40 364-403 218-257 (399)
440 COG1102 Cmk Cytidylate kinase 96.6 0.0015 3.2E-08 62.8 3.2 28 368-395 3-30 (179)
441 PRK09302 circadian clock prote 96.6 0.018 3.9E-07 64.9 12.5 39 361-399 27-69 (509)
442 cd02022 DPCK Dephospho-coenzym 96.6 0.009 2E-07 57.9 8.8 38 368-408 2-39 (179)
443 TIGR03499 FlhF flagellar biosy 96.6 0.0046 1E-07 64.5 7.2 37 364-400 193-234 (282)
444 PF00406 ADK: Adenylate kinase 96.6 0.0038 8.3E-08 58.4 5.9 35 370-406 1-35 (151)
445 TIGR02239 recomb_RAD51 DNA rep 96.6 0.004 8.6E-08 66.2 6.6 116 361-478 92-243 (316)
446 PRK14526 adenylate kinase; Pro 96.6 0.0067 1.5E-07 60.8 7.8 34 367-402 2-35 (211)
447 PRK05541 adenylylsulfate kinas 96.6 0.0052 1.1E-07 59.0 6.7 41 363-403 5-48 (176)
448 cd03215 ABC_Carb_Monos_II This 96.6 0.0093 2E-07 57.8 8.5 27 363-389 24-50 (182)
449 COG1936 Predicted nucleotide k 96.6 0.0041 8.8E-08 60.4 5.8 34 367-403 2-35 (180)
450 cd03213 ABCG_EPDR ABCG transpo 96.6 0.018 3.8E-07 56.5 10.5 27 363-389 33-59 (194)
451 cd03222 ABC_RNaseL_inhibitor T 96.6 0.0088 1.9E-07 58.4 8.2 72 364-435 24-100 (177)
452 PRK06581 DNA polymerase III su 96.6 0.059 1.3E-06 55.3 14.3 148 364-535 14-176 (263)
453 PF02562 PhoH: PhoH-like prote 96.6 0.0022 4.7E-08 64.1 4.0 23 367-389 21-43 (205)
454 cd03230 ABC_DR_subfamily_A Thi 96.5 0.0086 1.9E-07 57.5 8.1 27 363-389 24-50 (173)
455 cd01125 repA Hexameric Replica 96.5 0.0089 1.9E-07 60.5 8.5 20 368-387 4-23 (239)
456 TIGR00064 ftsY signal recognit 96.5 0.02 4.3E-07 59.7 11.2 38 362-399 69-109 (272)
457 PLN02199 shikimate kinase 96.5 0.013 2.7E-07 61.8 9.7 33 365-397 102-134 (303)
458 COG2805 PilT Tfp pilus assembl 96.5 0.0085 1.8E-07 62.9 8.2 69 367-435 127-209 (353)
459 COG1066 Sms Predicted ATP-depe 96.5 0.018 3.8E-07 62.8 10.9 80 361-440 89-184 (456)
460 COG4088 Predicted nucleotide k 96.5 0.0063 1.4E-07 60.8 6.8 22 368-389 4-25 (261)
461 PRK14737 gmk guanylate kinase; 96.5 0.0037 8E-08 61.4 5.3 26 364-389 3-28 (186)
462 TIGR01425 SRP54_euk signal rec 96.5 0.025 5.4E-07 62.5 11.9 196 363-575 98-339 (429)
463 cd03232 ABC_PDR_domain2 The pl 96.5 0.023 5E-07 55.5 10.5 26 363-388 31-56 (192)
464 PF13238 AAA_18: AAA domain; P 96.4 0.0019 4.1E-08 57.6 2.6 22 368-389 1-22 (129)
465 PRK01184 hypothetical protein; 96.4 0.0028 6E-08 61.2 3.8 29 367-396 3-31 (184)
466 PRK12337 2-phosphoglycerate ki 96.4 0.057 1.2E-06 60.2 14.2 31 363-393 253-283 (475)
467 KOG0058 Peptide exporter, ABC 96.4 0.012 2.7E-07 67.7 9.3 29 361-389 490-518 (716)
468 PF13481 AAA_25: AAA domain; P 96.4 0.0057 1.2E-07 59.1 5.8 73 367-439 34-156 (193)
469 PRK11174 cysteine/glutathione 96.4 0.02 4.3E-07 65.5 11.1 28 362-389 373-400 (588)
470 PF12780 AAA_8: P-loop contain 96.4 0.019 4.2E-07 59.6 9.9 218 333-574 9-263 (268)
471 TIGR02533 type_II_gspE general 96.4 0.0081 1.8E-07 67.5 7.6 94 328-435 218-322 (486)
472 PRK04182 cytidylate kinase; Pr 96.4 0.0031 6.6E-08 60.0 3.7 29 367-395 2-30 (180)
473 COG2804 PulE Type II secretory 96.4 0.0071 1.5E-07 67.3 6.9 95 327-435 233-338 (500)
474 TIGR01448 recD_rel helicase, p 96.4 0.019 4.1E-07 67.6 10.9 97 367-481 340-455 (720)
475 COG1121 ZnuC ABC-type Mn/Zn tr 96.4 0.022 4.8E-07 58.7 10.0 55 413-482 146-200 (254)
476 PRK11176 lipid transporter ATP 96.3 0.016 3.6E-07 66.0 10.1 28 362-389 366-393 (582)
477 PF13245 AAA_19: Part of AAA d 96.3 0.0044 9.6E-08 52.2 4.0 31 368-398 13-50 (76)
478 PRK09302 circadian clock prote 96.3 0.027 5.8E-07 63.5 11.5 107 361-478 269-406 (509)
479 cd03214 ABC_Iron-Siderophores_ 96.3 0.018 3.9E-07 55.6 8.8 27 363-389 23-49 (180)
480 PRK09544 znuC high-affinity zi 96.3 0.013 2.8E-07 60.1 8.1 28 362-389 27-54 (251)
481 PRK12608 transcription termina 96.3 0.027 5.9E-07 61.1 10.9 23 367-389 135-157 (380)
482 TIGR00767 rho transcription te 96.3 0.009 2E-07 65.3 7.3 26 365-390 168-193 (415)
483 TIGR03819 heli_sec_ATPase heli 96.3 0.0043 9.4E-08 66.6 4.9 70 365-434 178-263 (340)
484 TIGR02173 cyt_kin_arch cytidyl 96.3 0.0034 7.4E-08 59.3 3.6 29 368-396 3-31 (171)
485 PRK10436 hypothetical protein; 96.3 0.0098 2.1E-07 66.4 7.8 94 328-434 194-297 (462)
486 PRK13541 cytochrome c biogenes 96.3 0.046 1E-06 53.4 11.6 27 363-389 24-50 (195)
487 COG2874 FlaH Predicted ATPases 96.3 0.022 4.9E-07 57.2 9.3 122 356-490 17-176 (235)
488 COG1134 TagH ABC-type polysacc 96.3 0.03 6.6E-07 57.2 10.3 25 365-389 53-77 (249)
489 COG2909 MalT ATP-dependent tra 96.3 0.034 7.3E-07 65.2 12.0 155 365-542 37-229 (894)
490 PRK00889 adenylylsulfate kinas 96.2 0.015 3.2E-07 55.8 7.7 38 365-402 4-44 (175)
491 PRK13539 cytochrome c biogenes 96.2 0.036 7.8E-07 54.8 10.7 27 363-389 26-52 (207)
492 cd03229 ABC_Class3 This class 96.2 0.013 2.8E-07 56.5 7.3 26 364-389 25-50 (178)
493 PF10443 RNA12: RNA12 protein; 96.2 0.16 3.4E-06 56.0 16.2 35 482-518 197-231 (431)
494 cd00561 CobA_CobO_BtuR ATP:cor 96.2 0.051 1.1E-06 52.3 11.1 22 368-389 5-26 (159)
495 PF13479 AAA_24: AAA domain 96.2 0.0052 1.1E-07 61.4 4.4 68 365-436 3-80 (213)
496 COG5245 DYN1 Dynein, heavy cha 96.2 0.028 6E-07 68.9 10.8 176 363-555 1492-1716(3164)
497 TIGR03797 NHPM_micro_ABC2 NHPM 96.2 0.022 4.7E-07 66.5 10.1 28 362-389 476-503 (686)
498 cd03287 ABC_MSH3_euk MutS3 hom 96.2 0.026 5.6E-07 57.1 9.4 23 365-387 31-53 (222)
499 TIGR03796 NHPM_micro_ABC1 NHPM 96.2 0.019 4.1E-07 67.2 9.5 28 362-389 502-529 (710)
500 KOG3928 Mitochondrial ribosome 96.2 0.19 4.2E-06 54.8 16.2 51 497-548 405-457 (461)
No 1
>COG0465 HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.8e-65 Score=564.21 Aligned_cols=384 Identities=51% Similarity=0.689 Sum_probs=312.6
Q ss_pred ceeehHHHHHHHHcCCccEEEEeCc--EEEEEEecCCcccchhhhhhhhhhhhhhhhccCCcceeEEEecCCCCCchhHH
Q 007575 181 VSVPYSDFLSKINSNQVAKVEVDGV--HIMFKLKNDGSIQESEVITNKFQESESLLKSVTPTKRIVYTTTRPSDIKTPYE 258 (597)
Q Consensus 181 ~~~~y~~f~~~~~~~~v~~v~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~ 258 (597)
..++|++|+..+..++|++|.+++. .+.++.+++.. ...|.+....+.. ...
T Consensus 23 ~~~~~~~f~~~~~~~~v~~~~~~~~~~~v~~~~~~~~~-------------------------~~~~~~~~~~~~~-~~~ 76 (596)
T COG0465 23 KQVTYSQFIQLVSGGKVSSVSIKGDSKTVNLKLKDGSK-------------------------NTVYLPKGVNDPN-LVS 76 (596)
T ss_pred ccccHHHHHHHHhcCCceEEEEcCCceEEEEEecCCcc-------------------------eEEeecCCcccHH-HHH
Confidence 3589999999999999999999874 45555554411 1233333333332 233
Q ss_pred HHHhCCceecCCCCCCcCcHHHHHHHHHHHHHHHHHHhhcccccccccccccccccCCCCCCccccCCCCcccccccCCh
Q 007575 259 KMLENQVEFGSPDKRSGGFLNSALIALFYVAVLAGLLHRFPVSFSQTAGQVGHRKTRGPGGAKVSEQGDTITFADVAGVD 338 (597)
Q Consensus 259 ~~~~~~v~~~~~~~~~~~~~~~~l~~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vtf~dV~G~d 338 (597)
.+..+++......+....++...+.+++++.++..++..+....++.++......+.++......+....++|.|++|.+
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~il~~~~~~~~~~r~~~~g~g~~~~~~gkskak~~~~~~~~v~F~DVAG~d 156 (596)
T COG0465 77 FLDSNNITESGFIPEDNSLLASLLSTWLPFILLIGLGWFFFRRQAQGGGGGGAFSFGKSKAKLYLEDQVKVTFADVAGVD 156 (596)
T ss_pred HHHhcCCcccccCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCcccCCChHHHHHhcccccCcChhhhcCcH
Confidence 44445543322222333344555555555555554332221111222111112222222222233446789999999999
Q ss_pred HHHHHHHHHHHHhcChhHHhhcCCCCCCceEEeCCCCChHHHHHHHHHHhcCCCeeeechhhhHHHHhhcchHHHHHHHH
Q 007575 339 EAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFVELYVGMGASRVRDLFA 418 (597)
Q Consensus 339 e~k~~L~eiv~~l~~p~~~~~lg~~~p~gVLL~GPPGTGKT~LArAIA~el~~pfi~is~sef~~~~vG~~e~~vr~lF~ 418 (597)
|+|++|.|+|+++++|.+|..+|++.|+|+||+||||||||+||||+|+|+++||+++++++|+++|+|.+++++|++|.
T Consensus 157 Eakeel~EiVdfLk~p~ky~~lGakiPkGvlLvGpPGTGKTLLAkAvAgEA~VPFf~iSGS~FVemfVGvGAsRVRdLF~ 236 (596)
T COG0465 157 EAKEELSELVDFLKNPKKYQALGAKIPKGVLLVGPPGTGKTLLAKAVAGEAGVPFFSISGSDFVEMFVGVGASRVRDLFE 236 (596)
T ss_pred HHHHHHHHHHHHHhCchhhHhcccccccceeEecCCCCCcHHHHHHHhcccCCCceeccchhhhhhhcCCCcHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhcCCeEEEEcCcchhhhhcCCcccccchhHHHHHHHHHHHHhcCCCCCCcEEEEEecCCCCCCChhhhCCCCcceEE
Q 007575 419 RAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATNRSDVLDPALRRPGRFDRVV 498 (597)
Q Consensus 419 ~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~eqtLnqLL~emdg~~~~~~VIVIaaTNrpd~LD~aLlRpgRFd~~I 498 (597)
+|++++||||||||||+++++|+.+ .++++++++|++||||++||||..+.+|+||++|||||.||+||+||||||++|
T Consensus 237 qAkk~aP~IIFIDEiDAvGr~Rg~g-~GggnderEQTLNQlLvEmDGF~~~~gviviaaTNRpdVlD~ALlRpgRFDRqI 315 (596)
T COG0465 237 QAKKNAPCIIFIDEIDAVGRQRGAG-LGGGNDEREQTLNQLLVEMDGFGGNEGVIVIAATNRPDVLDPALLRPGRFDRQI 315 (596)
T ss_pred HhhccCCCeEEEehhhhcccccCCC-CCCCchHHHHHHHHHHhhhccCCCCCceEEEecCCCcccchHhhcCCCCcceee
Confidence 9999999999999999999999876 578999999999999999999999999999999999999999999999999999
Q ss_pred EecCCCHHHHHHHHHHHHhcCCCCCCCCCCHHHHHHhCCCCCHHHHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHhcc
Q 007575 499 MVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTTGFTGADLANLVNEAALLAGRLNKVVVEKIDFIHAVERSIAV 578 (597)
Q Consensus 499 ~v~~Pd~~eR~eILk~~l~~~~~~l~~dvdl~~LA~~t~G~SgaDL~~Lv~eAal~A~r~~~~~It~~d~~~Al~~v~~g 578 (597)
.++.||..+|++|++.|+++ .++++++++..+|+.|+||+|+||.|++|+|++.|.+++...|++.||++|.+++++|
T Consensus 316 ~V~~PDi~gRe~IlkvH~~~--~~l~~~Vdl~~iAr~tpGfsGAdL~nl~NEAal~aar~n~~~i~~~~i~ea~drv~~G 393 (596)
T COG0465 316 LVELPDIKGREQILKVHAKN--KPLAEDVDLKKIARGTPGFSGADLANLLNEAALLAARRNKKEITMRDIEEAIDRVIAG 393 (596)
T ss_pred ecCCcchhhHHHHHHHHhhc--CCCCCcCCHHHHhhhCCCcccchHhhhHHHHHHHHHHhcCeeEeccchHHHHHHHhcC
Confidence 99999999999999999976 4778999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccccchhhhhh
Q 007575 579 SLSLSLSLSLQASIS 593 (597)
Q Consensus 579 ~~k~s~~ls~q~~l~ 593 (597)
.+++++++++...-+
T Consensus 394 ~erks~vise~ek~~ 408 (596)
T COG0465 394 PERKSRVISEAEKKI 408 (596)
T ss_pred cCcCCcccChhhhcc
Confidence 999999998766544
No 2
>KOG0731 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=9.5e-61 Score=535.98 Aligned_cols=267 Identities=62% Similarity=0.903 Sum_probs=254.2
Q ss_pred cCCCCcccccccCChHHHHHHHHHHHHhcChhHHhhcCCCCCCceEEeCCCCChHHHHHHHHHHhcCCCeeeechhhhHH
Q 007575 324 EQGDTITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFVE 403 (597)
Q Consensus 324 ~~~~~vtf~dV~G~de~k~~L~eiv~~l~~p~~~~~lg~~~p~gVLL~GPPGTGKT~LArAIA~el~~pfi~is~sef~~ 403 (597)
+...+++|+||+|++++|++|+|+|+||++|++|.++|+++|+|+||+||||||||+||||+|+|+++||+++++++|++
T Consensus 303 ~~~t~V~FkDVAG~deAK~El~E~V~fLKNP~~Y~~lGAKiPkGvLL~GPPGTGKTLLAKAiAGEAgVPF~svSGSEFvE 382 (774)
T KOG0731|consen 303 EGNTGVKFKDVAGVDEAKEELMEFVKFLKNPEQYQELGAKIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSVSGSEFVE 382 (774)
T ss_pred CCCCCCccccccCcHHHHHHHHHHHHHhcCHHHHHHcCCcCcCceEEECCCCCcHHHHHHHHhcccCCceeeechHHHHH
Confidence 44556999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhcchHHHHHHHHHHHhcCCeEEEEcCcchhhhhcCCcccccchhHHHHHHHHHHHHhcCCCCCCcEEEEEecCCCCC
Q 007575 404 LYVGMGASRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATNRSDV 483 (597)
Q Consensus 404 ~~vG~~e~~vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~eqtLnqLL~emdg~~~~~~VIVIaaTNrpd~ 483 (597)
+++|.+++++|++|..|+.++||||||||||+++..|++....+.++++++++||||.+||||....+|||+|+||+++.
T Consensus 383 ~~~g~~asrvr~lf~~ar~~aP~iifideida~~~~r~G~~~~~~~~e~e~tlnQll~emDgf~~~~~vi~~a~tnr~d~ 462 (774)
T KOG0731|consen 383 MFVGVGASRVRDLFPLARKNAPSIIFIDEIDAVGRKRGGKGTGGGQDEREQTLNQLLVEMDGFETSKGVIVLAATNRPDI 462 (774)
T ss_pred HhcccchHHHHHHHHHhhccCCeEEEecccccccccccccccCCCChHHHHHHHHHHHHhcCCcCCCcEEEEeccCCccc
Confidence 99999999999999999999999999999999999997544568899999999999999999999999999999999999
Q ss_pred CChhhhCCCCcceEEEecCCCHHHHHHHHHHHHhcCCCCCCCCCCHHHHHHhCCCCCHHHHHHHHHHHHHHHHhcCCCcc
Q 007575 484 LDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTTGFTGADLANLVNEAALLAGRLNKVVV 563 (597)
Q Consensus 484 LD~aLlRpgRFd~~I~v~~Pd~~eR~eILk~~l~~~~~~l~~dvdl~~LA~~t~G~SgaDL~~Lv~eAal~A~r~~~~~I 563 (597)
||+||+||||||++|+++.|+..+|.+|++.|+++.++. .+++++..+|.+|+||+|+||.|+||+|++.|.|++...|
T Consensus 463 ld~allrpGRfdr~i~i~~p~~~~r~~i~~~h~~~~~~~-~e~~dl~~~a~~t~gf~gadl~n~~neaa~~a~r~~~~~i 541 (774)
T KOG0731|consen 463 LDPALLRPGRFDRQIQIDLPDVKGRASILKVHLRKKKLD-DEDVDLSKLASLTPGFSGADLANLCNEAALLAARKGLREI 541 (774)
T ss_pred cCHHhcCCCccccceeccCCchhhhHHHHHHHhhccCCC-cchhhHHHHHhcCCCCcHHHHHhhhhHHHHHHHHhccCcc
Confidence 999999999999999999999999999999999876554 4778999999999999999999999999999999999999
Q ss_pred cHHHHHHHHHHHhccccccccccchhhh
Q 007575 564 EKIDFIHAVERSIAVSLSLSLSLSLQAS 591 (597)
Q Consensus 564 t~~d~~~Al~~v~~g~~k~s~~ls~q~~ 591 (597)
+..||+.|++++++|.++++..++.+..
T Consensus 542 ~~~~~~~a~~Rvi~G~~~~~~~~~~~~~ 569 (774)
T KOG0731|consen 542 GTKDLEYAIERVIAGMEKKSRVLSLEEK 569 (774)
T ss_pred chhhHHHHHHHHhccccccchhcCHhhh
Confidence 9999999999999999999888776654
No 3
>KOG0734 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=7.2e-62 Score=518.18 Aligned_cols=266 Identities=56% Similarity=0.793 Sum_probs=254.2
Q ss_pred ccCCCCcccccccCChHHHHHHHHHHHHhcChhHHhhcCCCCCCceEEeCCCCChHHHHHHHHHHhcCCCeeeechhhhH
Q 007575 323 SEQGDTITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFV 402 (597)
Q Consensus 323 ~~~~~~vtf~dV~G~de~k~~L~eiv~~l~~p~~~~~lg~~~p~gVLL~GPPGTGKT~LArAIA~el~~pfi~is~sef~ 402 (597)
.+...+++|+||-|+||+|++|+|+|+||++|++|.++|.+.|+||||+||||||||+||||+|+|+++|||++++++|-
T Consensus 295 p~~~~nv~F~dVkG~DEAK~ELeEiVefLkdP~kftrLGGKLPKGVLLvGPPGTGKTlLARAvAGEA~VPFF~~sGSEFd 374 (752)
T KOG0734|consen 295 PEQMKNVTFEDVKGVDEAKQELEEIVEFLKDPTKFTRLGGKLPKGVLLVGPPGTGKTLLARAVAGEAGVPFFYASGSEFD 374 (752)
T ss_pred hhhhcccccccccChHHHHHHHHHHHHHhcCcHHhhhccCcCCCceEEeCCCCCchhHHHHHhhcccCCCeEeccccchh
Confidence 44556899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhcchHHHHHHHHHHHhcCCeEEEEcCcchhhhhcCCcccccchhHHHHHHHHHHHHhcCCCCCCcEEEEEecCCCC
Q 007575 403 ELYVGMGASRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATNRSD 482 (597)
Q Consensus 403 ~~~vG~~e~~vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~eqtLnqLL~emdg~~~~~~VIVIaaTNrpd 482 (597)
++|+|++++++|++|..|++.+||||||||||+++.+|... ..+ ...|++||||.+||||..+.+||||+|||.|+
T Consensus 375 Em~VGvGArRVRdLF~aAk~~APcIIFIDEiDavG~kR~~~---~~~-y~kqTlNQLLvEmDGF~qNeGiIvigATNfpe 450 (752)
T KOG0734|consen 375 EMFVGVGARRVRDLFAAAKARAPCIIFIDEIDAVGGKRNPS---DQH-YAKQTLNQLLVEMDGFKQNEGIIVIGATNFPE 450 (752)
T ss_pred hhhhcccHHHHHHHHHHHHhcCCeEEEEechhhhcccCCcc---HHH-HHHHHHHHHHHHhcCcCcCCceEEEeccCChh
Confidence 99999999999999999999999999999999999998653 223 88999999999999999999999999999999
Q ss_pred CCChhhhCCCCcceEEEecCCCHHHHHHHHHHHHhcCCCCCCCCCCHHHHHHhCCCCCHHHHHHHHHHHHHHHHhcCCCc
Q 007575 483 VLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTTGFTGADLANLVNEAALLAGRLNKVV 562 (597)
Q Consensus 483 ~LD~aLlRpgRFd~~I~v~~Pd~~eR~eILk~~l~~~~~~l~~dvdl~~LA~~t~G~SgaDL~~Lv~eAal~A~r~~~~~ 562 (597)
.||+||.||||||++|.|+.||..+|.+||+.|+.+ +++++++|+..||+-|.||+|+||+||||.||+.|+..+...
T Consensus 451 ~LD~AL~RPGRFD~~v~Vp~PDv~GR~eIL~~yl~k--i~~~~~VD~~iiARGT~GFsGAdLaNlVNqAAlkAa~dga~~ 528 (752)
T KOG0734|consen 451 ALDKALTRPGRFDRHVTVPLPDVRGRTEILKLYLSK--IPLDEDVDPKIIARGTPGFSGADLANLVNQAALKAAVDGAEM 528 (752)
T ss_pred hhhHHhcCCCccceeEecCCCCcccHHHHHHHHHhc--CCcccCCCHhHhccCCCCCchHHHHHHHHHHHHHHHhcCccc
Confidence 999999999999999999999999999999999975 688899999999999999999999999999999999999999
Q ss_pred ccHHHHHHHHHHHhccccccccccchhhhhhc
Q 007575 563 VEKIDFIHAVERSIAVSLSLSLSLSLQASISL 594 (597)
Q Consensus 563 It~~d~~~Al~~v~~g~~k~s~~ls~q~~l~l 594 (597)
|++.|++.|-+++++|+++++++++.++.-+.
T Consensus 529 VtM~~LE~akDrIlMG~ERks~~i~~eak~~T 560 (752)
T KOG0734|consen 529 VTMKHLEFAKDRILMGPERKSMVIDEEAKKIT 560 (752)
T ss_pred ccHHHHhhhhhheeecccccccccChhhhhhh
Confidence 99999999999999999999999998876654
No 4
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4.3e-59 Score=509.85 Aligned_cols=327 Identities=38% Similarity=0.636 Sum_probs=292.1
Q ss_pred cceeEEEecCCCCCchhHHH-HHhCCceecCCCCC---------------------------CcCcHHHHHHHHHHHHHH
Q 007575 240 TKRIVYTTTRPSDIKTPYEK-MLENQVEFGSPDKR---------------------------SGGFLNSALIALFYVAVL 291 (597)
Q Consensus 240 ~~~~~~~t~~~~~~~~~~~~-~~~~~v~~~~~~~~---------------------------~~~~~~~~l~~l~~~~~l 291 (597)
..-|+.+|+||+.+++++++ +++++++++.|+.. ++||++++|.++|.++.+
T Consensus 320 ~vivl~atnrp~sld~alRRgRfd~ev~IgiP~~~~RldIl~~l~k~~~~~~~~~l~~iA~~thGyvGaDL~~l~~ea~~ 399 (693)
T KOG0730|consen 320 KVIVLAATNRPDSLDPALRRGRFDREVEIGIPGSDGRLDILRVLTKKMNLLSDVDLEDIAVSTHGYVGADLAALCREASL 399 (693)
T ss_pred cEEEEEecCCccccChhhhcCCCcceeeecCCCchhHHHHHHHHHHhcCCcchhhHHHHHHHccchhHHHHHHHHHHHHH
Confidence 34467899999999999984 99999999999843 799999999999999999
Q ss_pred HHHHhhcccccccccccccccccCCCCCCccccCCCCcccccccCChHHHHHHHHHHHH-hcChhHHhhcCCCCCCceEE
Q 007575 292 AGLLHRFPVSFSQTAGQVGHRKTRGPGGAKVSEQGDTITFADVAGVDEAKEELEEIVEF-LRSPDKYIRLGARPPRGVLL 370 (597)
Q Consensus 292 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vtf~dV~G~de~k~~L~eiv~~-l~~p~~~~~lg~~~p~gVLL 370 (597)
.++.+... .+....+ ....++.+....+.|+++|+|++|++++|.+|++.|.| +++|+.|.++|..+|+||||
T Consensus 400 ~~~r~~~~-~~~~A~~-----~i~psa~Re~~ve~p~v~W~dIGGlE~lK~elq~~V~~p~~~pe~F~r~Gi~ppkGVLl 473 (693)
T KOG0730|consen 400 QATRRTLE-IFQEALM-----GIRPSALREILVEMPNVSWDDIGGLEELKRELQQAVEWPLKHPEKFARFGISPPKGVLL 473 (693)
T ss_pred HHhhhhHH-HHHHHHh-----cCCchhhhheeccCCCCChhhccCHHHHHHHHHHHHhhhhhchHHHHHhcCCCCceEEE
Confidence 99876110 1111111 11222333445678999999999999999999999999 99999999999999999999
Q ss_pred eCCCCChHHHHHHHHHHhcCCCeeeechhhhHHHHhhcchHHHHHHHHHHHhcCCeEEEEcCcchhhhhcCCcccccchh
Q 007575 371 VGLPGTGKTLLAKAVAGEAEVPFISCSASEFVELYVGMGASRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSND 450 (597)
Q Consensus 371 ~GPPGTGKT~LArAIA~el~~pfi~is~sef~~~~vG~~e~~vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~ 450 (597)
|||||||||++|||+|++++++|+++.+++++++|+|++++.++++|++|+..+|||||+||||+++..|++. ++.
T Consensus 474 yGPPGC~KT~lAkalAne~~~nFlsvkgpEL~sk~vGeSEr~ir~iF~kAR~~aP~IiFfDEiDsi~~~R~g~----~~~ 549 (693)
T KOG0730|consen 474 YGPPGCGKTLLAKALANEAGMNFLSVKGPELFSKYVGESERAIREVFRKARQVAPCIIFFDEIDALAGSRGGS----SSG 549 (693)
T ss_pred ECCCCcchHHHHHHHhhhhcCCeeeccCHHHHHHhcCchHHHHHHHHHHHhhcCCeEEehhhHHhHhhccCCC----ccc
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999743 237
Q ss_pred HHHHHHHHHHHHhcCCCCCCcEEEEEecCCCCCCChhhhCCCCcceEEEecCCCHHHHHHHHHHHHhcCCCCCCCCCCHH
Q 007575 451 EREQTLNQLLTEMDGFDSNSAVIVLGATNRSDVLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLG 530 (597)
Q Consensus 451 e~eqtLnqLL~emdg~~~~~~VIVIaaTNrpd~LD~aLlRpgRFd~~I~v~~Pd~~eR~eILk~~l~~~~~~l~~dvdl~ 530 (597)
..++++++||++|||+....+|+||||||||+.||+||+||||||+.|+|++||.+.|.+||+.++++ +++.+++|++
T Consensus 550 v~~RVlsqLLtEmDG~e~~k~V~ViAATNRpd~ID~ALlRPGRlD~iiyVplPD~~aR~~Ilk~~~kk--mp~~~~vdl~ 627 (693)
T KOG0730|consen 550 VTDRVLSQLLTEMDGLEALKNVLVIAATNRPDMIDPALLRPGRLDRIIYVPLPDLEARLEILKQCAKK--MPFSEDVDLE 627 (693)
T ss_pred hHHHHHHHHHHHcccccccCcEEEEeccCChhhcCHHHcCCcccceeEeecCccHHHHHHHHHHHHhc--CCCCccccHH
Confidence 78999999999999999999999999999999999999999999999999999999999999999965 6889999999
Q ss_pred HHHHhCCCCCHHHHHHHHHHHHHHHHhcC--CCcccHHHHHHHHHHHhcc
Q 007575 531 DIASMTTGFTGADLANLVNEAALLAGRLN--KVVVEKIDFIHAVERSIAV 578 (597)
Q Consensus 531 ~LA~~t~G~SgaDL~~Lv~eAal~A~r~~--~~~It~~d~~~Al~~v~~g 578 (597)
.||..|+||||+||.++|++|++.|.+++ ...|+.+||++|++.+...
T Consensus 628 ~La~~T~g~SGAel~~lCq~A~~~a~~e~i~a~~i~~~hf~~al~~~r~s 677 (693)
T KOG0730|consen 628 ELAQATEGYSGAEIVAVCQEAALLALRESIEATEITWQHFEEALKAVRPS 677 (693)
T ss_pred HHHHHhccCChHHHHHHHHHHHHHHHHHhcccccccHHHHHHHHHhhccc
Confidence 99999999999999999999999999985 5679999999999887544
No 5
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1e-58 Score=500.43 Aligned_cols=342 Identities=36% Similarity=0.561 Sum_probs=294.3
Q ss_pred CcceeEEEecCCCCCchhHH--HHHhCCceecCCCCC---------------------------CcCcHHHHHHHHHHHH
Q 007575 239 PTKRIVYTTTRPSDIKTPYE--KMLENQVEFGSPDKR---------------------------SGGFLNSALIALFYVA 289 (597)
Q Consensus 239 ~~~~~~~~t~~~~~~~~~~~--~~~~~~v~~~~~~~~---------------------------~~~~~~~~l~~l~~~~ 289 (597)
...-|++||||||.+|++++ ++||+++.++.|+.. ++||+|++|.+||.+|
T Consensus 328 ~~VlVIgATnRPDslDpaLRRaGRFdrEI~l~vP~e~aR~~IL~~~~~~lrl~g~~d~~qlA~lTPGfVGADL~AL~~~A 407 (802)
T KOG0733|consen 328 DPVLVIGATNRPDSLDPALRRAGRFDREICLGVPSETAREEILRIICRGLRLSGDFDFKQLAKLTPGFVGADLMALCREA 407 (802)
T ss_pred CCeEEEecCCCCcccCHHHhccccccceeeecCCchHHHHHHHHHHHhhCCCCCCcCHHHHHhcCCCccchhHHHHHHHH
Confidence 34557899999999999998 699999999999863 8999999999999999
Q ss_pred HHHHHHhhcccccc---cc---cc---------c--cc-----c---------------ccc------------------
Q 007575 290 VLAGLLHRFPVSFS---QT---AG---------Q--VG-----H---------------RKT------------------ 314 (597)
Q Consensus 290 ~l~~~~~~~~~~~~---~~---~~---------~--~~-----~---------------~~~------------------ 314 (597)
...++-|-+-.... .. .+ + +. . ...
T Consensus 408 a~vAikR~ld~~~~p~~~~~~~ed~~~~~~~~d~S~i~~~~~~~~~~~ld~v~~~~i~~~~d~~S~E~~~~L~i~~eDF~ 487 (802)
T KOG0733|consen 408 AFVAIKRILDQSSSPLTKVPISEDSSNKDAEEDQSSIKITSNAERPLELDRVVQDAILNNPDPLSKELLEGLSIKFEDFE 487 (802)
T ss_pred HHHHHHHHhhcccCccccCCccccccCCCccchhhhhhcCCcccccccHHHHHHHHHHhCCCCcChHHhccceecHHHHH
Confidence 99998764421110 00 00 0 00 0 000
Q ss_pred ------CCCCCCccccCCCCcccccccCChHHHHHHHHHHHH-hcChhHHhhcCCCCCCceEEeCCCCChHHHHHHHHHH
Q 007575 315 ------RGPGGAKVSEQGDTITFADVAGVDEAKEELEEIVEF-LRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAG 387 (597)
Q Consensus 315 ------~~~~~~~~~~~~~~vtf~dV~G~de~k~~L~eiv~~-l~~p~~~~~lg~~~p~gVLL~GPPGTGKT~LArAIA~ 387 (597)
.++..+..-...|+++|+||.|+++++.+|...|.+ +++|+.|..+|...|.||||+||||||||+||||+|+
T Consensus 488 ~Al~~iQPSakREGF~tVPdVtW~dIGaL~~vR~eL~~aI~~PiK~pd~~k~lGi~~PsGvLL~GPPGCGKTLlAKAVAN 567 (802)
T KOG0733|consen 488 EALSKIQPSAKREGFATVPDVTWDDIGALEEVRLELNMAILAPIKRPDLFKALGIDAPSGVLLCGPPGCGKTLLAKAVAN 567 (802)
T ss_pred HHHHhcCcchhcccceecCCCChhhcccHHHHHHHHHHHHhhhccCHHHHHHhCCCCCCceEEeCCCCccHHHHHHHHhh
Confidence 000011112345799999999999999999998887 9999999999999999999999999999999999999
Q ss_pred hcCCCeeeechhhhHHHHhhcchHHHHHHHHHHHhcCCeEEEEcCcchhhhhcCCcccccchhHHHHHHHHHHHHhcCCC
Q 007575 388 EAEVPFISCSASEFVELYVGMGASRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFD 467 (597)
Q Consensus 388 el~~pfi~is~sef~~~~vG~~e~~vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~eqtLnqLL~emdg~~ 467 (597)
|++.+|+++.+++++.+|||+++..+|.+|..|+..+|||||+||||+|++.|+.+ ......+++||||++|||..
T Consensus 568 Eag~NFisVKGPELlNkYVGESErAVR~vFqRAR~saPCVIFFDEiDaL~p~R~~~----~s~~s~RvvNqLLtElDGl~ 643 (802)
T KOG0733|consen 568 EAGANFISVKGPELLNKYVGESERAVRQVFQRARASAPCVIFFDEIDALVPRRSDE----GSSVSSRVVNQLLTELDGLE 643 (802)
T ss_pred hccCceEeecCHHHHHHHhhhHHHHHHHHHHHhhcCCCeEEEecchhhcCcccCCC----CchhHHHHHHHHHHHhcccc
Confidence 99999999999999999999999999999999999999999999999999999864 35667899999999999999
Q ss_pred CCCcEEEEEecCCCCCCChhhhCCCCcceEEEecCCCHHHHHHHHHHHHhcCCCCCCCCCCHHHHHHhCC--CCCHHHHH
Q 007575 468 SNSAVIVLGATNRSDVLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTT--GFTGADLA 545 (597)
Q Consensus 468 ~~~~VIVIaaTNrpd~LD~aLlRpgRFd~~I~v~~Pd~~eR~eILk~~l~~~~~~l~~dvdl~~LA~~t~--G~SgaDL~ 545 (597)
...+|.|||||||||.+|||++||||||+.++|++|+.++|.+||+.+.++...++.++||+++||+.+. ||||+||.
T Consensus 644 ~R~gV~viaATNRPDiIDpAiLRPGRlDk~LyV~lPn~~eR~~ILK~~tkn~k~pl~~dVdl~eia~~~~c~gftGADLa 723 (802)
T KOG0733|consen 644 ERRGVYVIAATNRPDIIDPAILRPGRLDKLLYVGLPNAEERVAILKTITKNTKPPLSSDVDLDEIARNTKCEGFTGADLA 723 (802)
T ss_pred cccceEEEeecCCCcccchhhcCCCccCceeeecCCCHHHHHHHHHHHhccCCCCCCcccCHHHHhhcccccCCchhhHH
Confidence 9999999999999999999999999999999999999999999999999877789999999999998876 99999999
Q ss_pred HHHHHHHHHHHhcC----------------CCcccHHHHHHHHHHHhcccccccc
Q 007575 546 NLVNEAALLAGRLN----------------KVVVEKIDFIHAVERSIAVSLSLSL 584 (597)
Q Consensus 546 ~Lv~eAal~A~r~~----------------~~~It~~d~~~Al~~v~~g~~k~s~ 584 (597)
.||++|++.|.++. ...++..||++|+.++.+.-.++.+
T Consensus 724 aLvreAsi~AL~~~~~~~~~~~~~~~~~~~~~~~t~~hF~eA~~~i~pSv~~~dr 778 (802)
T KOG0733|consen 724 ALVREASILALRESLFEIDSSEDDVTVRSSTIIVTYKHFEEAFQRIRPSVSERDR 778 (802)
T ss_pred HHHHHHHHHHHHHHHhhccccCcccceeeeeeeecHHHHHHHHHhcCCCccHHHH
Confidence 99999999998861 1246778999999999887665544
No 6
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=6.4e-59 Score=479.91 Aligned_cols=257 Identities=47% Similarity=0.761 Sum_probs=246.7
Q ss_pred ccCCCCcccccccCChHHHHHHHHHHHH-hcChhHHhhcCCCCCCceEEeCCCCChHHHHHHHHHHhcCCCeeeechhhh
Q 007575 323 SEQGDTITFADVAGVDEAKEELEEIVEF-LRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEF 401 (597)
Q Consensus 323 ~~~~~~vtf~dV~G~de~k~~L~eiv~~-l~~p~~~~~lg~~~p~gVLL~GPPGTGKT~LArAIA~el~~pfi~is~sef 401 (597)
.++.|.++++||.|+++++++|+|.|+. +++|+.|..+|..||+|||||||||||||+||||+|++.++.|+.+.+++|
T Consensus 142 v~e~PdvtY~dIGGL~~Qi~EirE~VELPL~~PElF~~~GI~PPKGVLLYGPPGTGKTLLAkAVA~~T~AtFIrvvgSEl 221 (406)
T COG1222 142 VEEKPDVTYEDIGGLDEQIQEIREVVELPLKNPELFEELGIDPPKGVLLYGPPGTGKTLLAKAVANQTDATFIRVVGSEL 221 (406)
T ss_pred eccCCCCChhhccCHHHHHHHHHHHhcccccCHHHHHHcCCCCCCceEeeCCCCCcHHHHHHHHHhccCceEEEeccHHH
Confidence 4577899999999999999999999998 999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhcchHHHHHHHHHHHhcCCeEEEEcCcchhhhhcCCcccccchhHHHHHHHHHHHHhcCCCCCCcEEEEEecCCC
Q 007575 402 VELYVGMGASRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATNRS 481 (597)
Q Consensus 402 ~~~~vG~~e~~vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~eqtLnqLL~emdg~~~~~~VIVIaaTNrp 481 (597)
+.+|+|++++.+|++|+.|+.++||||||||||+++.+|.+. ..+++.|..+|+-+||++||||.+..+|-||+||||+
T Consensus 222 VqKYiGEGaRlVRelF~lArekaPsIIFiDEIDAIg~kR~d~-~t~gDrEVQRTmleLL~qlDGFD~~~nvKVI~ATNR~ 300 (406)
T COG1222 222 VQKYIGEGARLVRELFELAREKAPSIIFIDEIDAIGAKRFDS-GTSGDREVQRTMLELLNQLDGFDPRGNVKVIMATNRP 300 (406)
T ss_pred HHHHhccchHHHHHHHHHHhhcCCeEEEEechhhhhcccccC-CCCchHHHHHHHHHHHHhccCCCCCCCeEEEEecCCc
Confidence 999999999999999999999999999999999999998765 3567889999999999999999999999999999999
Q ss_pred CCCChhhhCCCCcceEEEecCCCHHHHHHHHHHHHhcCCCCCCCCCCHHHHHHhCCCCCHHHHHHHHHHHHHHHHhcCCC
Q 007575 482 DVLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTTGFTGADLANLVNEAALLAGRLNKV 561 (597)
Q Consensus 482 d~LD~aLlRpgRFd~~I~v~~Pd~~eR~eILk~~l~~~~~~l~~dvdl~~LA~~t~G~SgaDL~~Lv~eAal~A~r~~~~ 561 (597)
|.|||||+||||||+.|+|++||.++|.+||+.|.++ +.+.+++|++.||+.|+|+|||||.++|.||.+.|.|..+.
T Consensus 301 D~LDPALLRPGR~DRkIEfplPd~~gR~~Il~IHtrk--M~l~~dvd~e~la~~~~g~sGAdlkaictEAGm~AiR~~R~ 378 (406)
T COG1222 301 DILDPALLRPGRFDRKIEFPLPDEEGRAEILKIHTRK--MNLADDVDLELLARLTEGFSGADLKAICTEAGMFAIRERRD 378 (406)
T ss_pred cccChhhcCCCcccceeecCCCCHHHHHHHHHHHhhh--ccCccCcCHHHHHHhcCCCchHHHHHHHHHHhHHHHHhccC
Confidence 9999999999999999999999999999999999976 68899999999999999999999999999999999999999
Q ss_pred cccHHHHHHHHHHHhcccccc
Q 007575 562 VVEKIDFIHAVERSIAVSLSL 582 (597)
Q Consensus 562 ~It~~d~~~Al~~v~~g~~k~ 582 (597)
.|+++||.+|+++++....+.
T Consensus 379 ~Vt~~DF~~Av~KV~~~~~~~ 399 (406)
T COG1222 379 EVTMEDFLKAVEKVVKKKKKL 399 (406)
T ss_pred eecHHHHHHHHHHHHhccccc
Confidence 999999999999999866543
No 7
>CHL00176 ftsH cell division protein; Validated
Probab=100.00 E-value=6.9e-50 Score=451.73 Aligned_cols=383 Identities=44% Similarity=0.629 Sum_probs=302.3
Q ss_pred CccceeehHHHHHHHHcCCccEEEEeCcEEEEEEecCCcccchhhhhhhhhhhhhhhhccCCcceeEEEecCCCCCchhH
Q 007575 178 TTFVSVPYSDFLSKINSNQVAKVEVDGVHIMFKLKNDGSIQESEVITNKFQESESLLKSVTPTKRIVYTTTRPSDIKTPY 257 (597)
Q Consensus 178 ~~~~~~~y~~f~~~~~~~~v~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~ 257 (597)
....+++||+|++++++|+|++|.+.++.+...+....... ......|.+..|......+
T Consensus 47 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~--------------------~~~~~~~~~~~~~~~~~~~ 106 (638)
T CHL00176 47 KASSRMTYGRFLEYLDMGWIKKVDLYDNGRTAIVEASSPEL--------------------GNRPQRIRVELPVGASELI 106 (638)
T ss_pred CCCceecHHHHHHHHHcCCeeEEEEecCceEEEEeeccccC--------------------CCcceeEEEeCCCCCHHHH
Confidence 34457999999999999999999998765543221110000 0000124444453223445
Q ss_pred HHHHhCCceecCCCCCCcCcHHHHHHH-HHHHHHHHHHHhhccccc--ccccccccccccCCCCCCccccCCCCcccccc
Q 007575 258 EKMLENQVEFGSPDKRSGGFLNSALIA-LFYVAVLAGLLHRFPVSF--SQTAGQVGHRKTRGPGGAKVSEQGDTITFADV 334 (597)
Q Consensus 258 ~~~~~~~v~~~~~~~~~~~~~~~~l~~-l~~~~~l~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~vtf~dV 334 (597)
..+.++++++...+....+++...+.. +++.+++.+++..+.... ....++ ......+............++|+||
T Consensus 107 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~f~dv 185 (638)
T CHL00176 107 QKLKEANIDFDAHPPVLKSNIVTILSNLLLPLILIGVLWFFFQRSSNFKGGPGQ-NLMNFGKSKARFQMEADTGITFRDI 185 (638)
T ss_pred HHHHHcCCcEEecCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcc-cccccchhHHHhhcccCCCCCHHhc
Confidence 677888888876554444444444433 345555554443221111 011111 0111222221222344567999999
Q ss_pred cCChHHHHHHHHHHHHhcChhHHhhcCCCCCCceEEeCCCCChHHHHHHHHHHhcCCCeeeechhhhHHHHhhcchHHHH
Q 007575 335 AGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFVELYVGMGASRVR 414 (597)
Q Consensus 335 ~G~de~k~~L~eiv~~l~~p~~~~~lg~~~p~gVLL~GPPGTGKT~LArAIA~el~~pfi~is~sef~~~~vG~~e~~vr 414 (597)
+|.++++++|.+++++++++..|..+|...|+|+||+||||||||++|+++|+++++||+.+++++|.++++|.+.+.++
T Consensus 186 ~G~~~~k~~l~eiv~~lk~~~~~~~~g~~~p~gVLL~GPpGTGKT~LAralA~e~~~p~i~is~s~f~~~~~g~~~~~vr 265 (638)
T CHL00176 186 AGIEEAKEEFEEVVSFLKKPERFTAVGAKIPKGVLLVGPPGTGKTLLAKAIAGEAEVPFFSISGSEFVEMFVGVGAARVR 265 (638)
T ss_pred cChHHHHHHHHHHHHHHhCHHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHHhCCCeeeccHHHHHHHhhhhhHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCeEEEEcCcchhhhhcCCcccccchhHHHHHHHHHHHHhcCCCCCCcEEEEEecCCCCCCChhhhCCCCc
Q 007575 415 DLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATNRSDVLDPALRRPGRF 494 (597)
Q Consensus 415 ~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~eqtLnqLL~emdg~~~~~~VIVIaaTNrpd~LD~aLlRpgRF 494 (597)
++|+.|+..+||||||||||+++..++.+ ..+.+++.++++++||.+||++..+.+++||++||+++.+|++++|||||
T Consensus 266 ~lF~~A~~~~P~ILfIDEID~l~~~r~~~-~~~~~~e~~~~L~~LL~~~dg~~~~~~ViVIaaTN~~~~LD~ALlRpGRF 344 (638)
T CHL00176 266 DLFKKAKENSPCIVFIDEIDAVGRQRGAG-IGGGNDEREQTLNQLLTEMDGFKGNKGVIVIAATNRVDILDAALLRPGRF 344 (638)
T ss_pred HHHHHHhcCCCcEEEEecchhhhhcccCC-CCCCcHHHHHHHHHHHhhhccccCCCCeeEEEecCchHhhhhhhhccccC
Confidence 99999999999999999999999887643 23567888999999999999999889999999999999999999999999
Q ss_pred ceEEEecCCCHHHHHHHHHHHHhcCCCCCCCCCCHHHHHHhCCCCCHHHHHHHHHHHHHHHHhcCCCcccHHHHHHHHHH
Q 007575 495 DRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTTGFTGADLANLVNEAALLAGRLNKVVVEKIDFIHAVER 574 (597)
Q Consensus 495 d~~I~v~~Pd~~eR~eILk~~l~~~~~~l~~dvdl~~LA~~t~G~SgaDL~~Lv~eAal~A~r~~~~~It~~d~~~Al~~ 574 (597)
|+++.+++|+.++|.+||+.|+++. .+.+++++..+|..|.||+|+||.++|++|++.|.+++...|+.+||++|+++
T Consensus 345 d~~I~v~lPd~~~R~~IL~~~l~~~--~~~~d~~l~~lA~~t~G~sgaDL~~lvneAal~a~r~~~~~It~~dl~~Ai~r 422 (638)
T CHL00176 345 DRQITVSLPDREGRLDILKVHARNK--KLSPDVSLELIARRTPGFSGADLANLLNEAAILTARRKKATITMKEIDTAIDR 422 (638)
T ss_pred ceEEEECCCCHHHHHHHHHHHHhhc--ccchhHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHhCCCCcCHHHHHHHHHH
Confidence 9999999999999999999999763 56678889999999999999999999999999999999999999999999999
Q ss_pred Hhcccccccc
Q 007575 575 SIAVSLSLSL 584 (597)
Q Consensus 575 v~~g~~k~s~ 584 (597)
++.|.+++..
T Consensus 423 v~~g~~~~~~ 432 (638)
T CHL00176 423 VIAGLEGTPL 432 (638)
T ss_pred HHhhhccCcc
Confidence 9999887653
No 8
>PRK10733 hflB ATP-dependent metalloprotease; Reviewed
Probab=100.00 E-value=3.7e-46 Score=424.13 Aligned_cols=376 Identities=49% Similarity=0.733 Sum_probs=304.4
Q ss_pred eeehHHHHHHHHcCCccEEEEeCcEEEEEEecCCcccchhhhhhhhhhhhhhhhccCCcceeEEEecCCCCCchhHHHHH
Q 007575 182 SVPYSDFLSKINSNQVAKVEVDGVHIMFKLKNDGSIQESEVITNKFQESESLLKSVTPTKRIVYTTTRPSDIKTPYEKML 261 (597)
Q Consensus 182 ~~~y~~f~~~~~~~~v~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~ 261 (597)
.++|+.|.+.+.++.+.++.+....|.+...++. .|.+..|.+....+..+.
T Consensus 31 ~~~~~~~~~~~~~~~v~Ev~~~~~tIK~~~~e~~----------------------------~~~~~~~~~~~~l~~~l~ 82 (644)
T PRK10733 31 KVDYSTFLQEVNQDQVREARINGREINVTKKDSN----------------------------RYTTYIPVNDPKLLDNLL 82 (644)
T ss_pred cCCHHHHHHHHHcCCeEEEEEeCCEEEEEEcCCc----------------------------eEEEeCCCCCHHHHHHHH
Confidence 5899999999999999999998887776654431 233443432233456677
Q ss_pred hCCceecCCCCCCcCcHHHHHHHHHHHHHHHHHHhhcccccccccccccccccCCCCCCccccCCCCcccccccCChHHH
Q 007575 262 ENQVEFGSPDKRSGGFLNSALIALFYVAVLAGLLHRFPVSFSQTAGQVGHRKTRGPGGAKVSEQGDTITFADVAGVDEAK 341 (597)
Q Consensus 262 ~~~v~~~~~~~~~~~~~~~~l~~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vtf~dV~G~de~k 341 (597)
..++.+...+.....++..++..+.+.+++.+++..+...++ .+++.....+...............+|+|+.|.++++
T Consensus 83 ~~~v~~~~~~~~~~~~~~~i~~~~~~~il~ig~~~v~~g~mt-~G~~~~l~af~~~~~~~~~~~~~~~~~~di~g~~~~~ 161 (644)
T PRK10733 83 TKNVKVVGEPPEEPSLLASIFISWFPMLLLIGVWIFFMRQMQ-GGGGKGAMSFGKSKARMLTEDQIKTTFADVAGCDEAK 161 (644)
T ss_pred HcCCeEEecCcccchHHHHHHHHHHHHHHHHHHHHHHHhhhc-CCCCceeEEeccccccccCchhhhCcHHHHcCHHHHH
Confidence 788877654444334444444444444444443322211111 1111011112222122222344568899999999999
Q ss_pred HHHHHHHHHhcChhHHhhcCCCCCCceEEeCCCCChHHHHHHHHHHhcCCCeeeechhhhHHHHhhcchHHHHHHHHHHH
Q 007575 342 EELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFVELYVGMGASRVRDLFARAK 421 (597)
Q Consensus 342 ~~L~eiv~~l~~p~~~~~lg~~~p~gVLL~GPPGTGKT~LArAIA~el~~pfi~is~sef~~~~vG~~e~~vr~lF~~A~ 421 (597)
++|.+++++++.+..|..++...|+|+||+||||||||++|+++|+++++||+.++++++.+.++|.++..++++|..|+
T Consensus 162 ~~l~~i~~~~~~~~~~~~~~~~~~~gill~G~~G~GKt~~~~~~a~~~~~~f~~is~~~~~~~~~g~~~~~~~~~f~~a~ 241 (644)
T PRK10733 162 EEVAELVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEAKVPFFTISGSDFVEMFVGVGASRVRDMFEQAK 241 (644)
T ss_pred HHHHHHHHHhhCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHHcCCCEEEEehHHhHHhhhcccHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCCeEEEEcCcchhhhhcCCcccccchhHHHHHHHHHHHHhcCCCCCCcEEEEEecCCCCCCChhhhCCCCcceEEEec
Q 007575 422 KEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATNRSDVLDPALRRPGRFDRVVMVE 501 (597)
Q Consensus 422 ~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~eqtLnqLL~emdg~~~~~~VIVIaaTNrpd~LD~aLlRpgRFd~~I~v~ 501 (597)
..+||||||||||+++..++.+. .+++++.++++|+||.+||++..+.+++||+|||+|+.||++++||||||+++.++
T Consensus 242 ~~~P~IifIDEiD~l~~~r~~~~-~g~~~~~~~~ln~lL~~mdg~~~~~~vivIaaTN~p~~lD~Al~RpgRfdr~i~v~ 320 (644)
T PRK10733 242 KAAPCIIFIDEIDAVGRQRGAGL-GGGHDEREQTLNQMLVEMDGFEGNEGIIVIAATNRPDVLDPALLRPGRFDRQVVVG 320 (644)
T ss_pred hcCCcEEEehhHhhhhhccCCCC-CCCchHHHHHHHHHHHhhhcccCCCCeeEEEecCChhhcCHHHhCCcccceEEEcC
Confidence 99999999999999998886542 45678889999999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHhcCCCCCCCCCCHHHHHHhCCCCCHHHHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHhccccc
Q 007575 502 TPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTTGFTGADLANLVNEAALLAGRLNKVVVEKIDFIHAVERSIAVSLS 581 (597)
Q Consensus 502 ~Pd~~eR~eILk~~l~~~~~~l~~dvdl~~LA~~t~G~SgaDL~~Lv~eAal~A~r~~~~~It~~d~~~Al~~v~~g~~k 581 (597)
+|+.++|.+||+.|+.+ .++.+++++..+|+.|.||||+||.++|++|+..|.+.++..|+..||++|++++..+.++
T Consensus 321 ~Pd~~~R~~Il~~~~~~--~~l~~~~d~~~la~~t~G~sgadl~~l~~eAa~~a~r~~~~~i~~~d~~~a~~~v~~g~~~ 398 (644)
T PRK10733 321 LPDVRGREQILKVHMRR--VPLAPDIDAAIIARGTPGFSGADLANLVNEAALFAARGNKRVVSMVEFEKAKDKIMMGAER 398 (644)
T ss_pred CCCHHHHHHHHHHHhhc--CCCCCcCCHHHHHhhCCCCCHHHHHHHHHHHHHHHHHcCCCcccHHHHHHHHHHHhccccc
Confidence 99999999999999975 4677889999999999999999999999999999999999999999999999999999988
Q ss_pred cccccchh
Q 007575 582 LSLSLSLQ 589 (597)
Q Consensus 582 ~s~~ls~q 589 (597)
++..++.+
T Consensus 399 ~~~~~~~~ 406 (644)
T PRK10733 399 RSMVMTEA 406 (644)
T ss_pred ccccccHH
Confidence 87777654
No 9
>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.1e-46 Score=415.75 Aligned_cols=252 Identities=39% Similarity=0.640 Sum_probs=228.9
Q ss_pred cCCCCcccccccCChHHHHHHHHHHHH-hcChhHHhhcCCCCCCceEEeCCCCChHHHHHHHHHHhcCCCeeeechhhhH
Q 007575 324 EQGDTITFADVAGVDEAKEELEEIVEF-LRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFV 402 (597)
Q Consensus 324 ~~~~~vtf~dV~G~de~k~~L~eiv~~-l~~p~~~~~lg~~~p~gVLL~GPPGTGKT~LArAIA~el~~pfi~is~sef~ 402 (597)
...|+|+|+||.|++++|.++.+-++. +++|+.|. .|.+...|||||||||||||++|||+|.|+...|+++.++++.
T Consensus 664 PKIPnV~WdDVGGLeevK~eIldTIqlPL~hpeLfs-sglrkRSGILLYGPPGTGKTLlAKAVATEcsL~FlSVKGPELL 742 (953)
T KOG0736|consen 664 PKIPNVSWDDVGGLEEVKTEILDTIQLPLKHPELFS-SGLRKRSGILLYGPPGTGKTLLAKAVATECSLNFLSVKGPELL 742 (953)
T ss_pred CCCCccchhcccCHHHHHHHHHHHhcCcccChhhhh-ccccccceeEEECCCCCchHHHHHHHHhhceeeEEeecCHHHH
Confidence 456899999999999999999999998 89988765 4888889999999999999999999999999999999999999
Q ss_pred HHHhhcchHHHHHHHHHHHhcCCeEEEEcCcchhhhhcCCcccccchhHHHHHHHHHHHHhcCCC--CCCcEEEEEecCC
Q 007575 403 ELYVGMGASRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFD--SNSAVIVLGATNR 480 (597)
Q Consensus 403 ~~~vG~~e~~vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~eqtLnqLL~emdg~~--~~~~VIVIaaTNr 480 (597)
.||+|++|+++|++|++|+..+|||||+||+|.|+++|+.. +.+...+++++.|||.||||+. +...|+||+||||
T Consensus 743 NMYVGqSE~NVR~VFerAR~A~PCVIFFDELDSlAP~RG~s--GDSGGVMDRVVSQLLAELDgls~~~s~~VFViGATNR 820 (953)
T KOG0736|consen 743 NMYVGQSEENVREVFERARSAAPCVIFFDELDSLAPNRGRS--GDSGGVMDRVVSQLLAELDGLSDSSSQDVFVIGATNR 820 (953)
T ss_pred HHHhcchHHHHHHHHHHhhccCCeEEEeccccccCccCCCC--CCccccHHHHHHHHHHHhhcccCCCCCceEEEecCCC
Confidence 99999999999999999999999999999999999999864 3445678999999999999998 4678999999999
Q ss_pred CCCCChhhhCCCCcceEEEecCCC-HHHHHHHHHHHHhcCCCCCCCCCCHHHHHHhCC-CCCHHHHHHHHHHHHHHHHhc
Q 007575 481 SDVLDPALRRPGRFDRVVMVETPD-KIGREAILKVHVSKKELPLAKDIDLGDIASMTT-GFTGADLANLVNEAALLAGRL 558 (597)
Q Consensus 481 pd~LD~aLlRpgRFd~~I~v~~Pd-~~eR~eILk~~l~~~~~~l~~dvdl~~LA~~t~-G~SgaDL~~Lv~eAal~A~r~ 558 (597)
||.|||+|+||||||+.+++.+++ .+.+..+|+...++ +.++++||+.+||+.++ .|||+|+..+|..|.+.|+++
T Consensus 821 PDLLDpALLRPGRFDKLvyvG~~~d~esk~~vL~AlTrk--FkLdedVdL~eiAk~cp~~~TGADlYsLCSdA~l~AikR 898 (953)
T KOG0736|consen 821 PDLLDPALLRPGRFDKLVYVGPNEDAESKLRVLEALTRK--FKLDEDVDLVEIAKKCPPNMTGADLYSLCSDAMLAAIKR 898 (953)
T ss_pred ccccChhhcCCCccceeEEecCCccHHHHHHHHHHHHHH--ccCCCCcCHHHHHhhCCcCCchhHHHHHHHHHHHHHHHH
Confidence 999999999999999999999874 56677899988865 68899999999999994 699999999999999999886
Q ss_pred C-----------------CCcccHHHHHHHHHHHhcccc
Q 007575 559 N-----------------KVVVEKIDFIHAVERSIAVSL 580 (597)
Q Consensus 559 ~-----------------~~~It~~d~~~Al~~v~~g~~ 580 (597)
. ...|+++||.+|++++.+..-
T Consensus 899 ~i~~ie~g~~~~~e~~~~~v~V~~eDflks~~~l~PSvS 937 (953)
T KOG0736|consen 899 TIHDIESGTISEEEQESSSVRVTMEDFLKSAKRLQPSVS 937 (953)
T ss_pred HHHHhhhccccccccCCceEEEEHHHHHHHHHhcCCccc
Confidence 1 235899999999999877653
No 10
>KOG0729 consensus 26S proteasome regulatory complex, ATPase RPT1 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.8e-46 Score=371.55 Aligned_cols=259 Identities=41% Similarity=0.660 Sum_probs=245.9
Q ss_pred ccCCCCcccccccCChHHHHHHHHHHHH-hcChhHHhhcCCCCCCceEEeCCCCChHHHHHHHHHHhcCCCeeeechhhh
Q 007575 323 SEQGDTITFADVAGVDEAKEELEEIVEF-LRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEF 401 (597)
Q Consensus 323 ~~~~~~vtf~dV~G~de~k~~L~eiv~~-l~~p~~~~~lg~~~p~gVLL~GPPGTGKT~LArAIA~el~~pfi~is~sef 401 (597)
.++.|.+++.||.|+.+..+.|+|+++. +.+|++|..+|..+|+|||+|||||||||++|+|+|++.+.-|+.+-++++
T Consensus 168 veekpdvty~dvggckeqieklrevve~pll~perfv~lgidppkgvllygppgtgktl~aravanrtdacfirvigsel 247 (435)
T KOG0729|consen 168 VEEKPDVTYSDVGGCKEQIEKLREVVELPLLHPERFVNLGIDPPKGVLLYGPPGTGKTLCARAVANRTDACFIRVIGSEL 247 (435)
T ss_pred eecCCCcccccccchHHHHHHHHHHHhccccCHHHHhhcCCCCCCceEEeCCCCCchhHHHHHHhcccCceEEeehhHHH
Confidence 4788999999999999999999999998 889999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhcchHHHHHHHHHHHhcCCeEEEEcCcchhhhhcCCcccccchhHHHHHHHHHHHHhcCCCCCCcEEEEEecCCC
Q 007575 402 VELYVGMGASRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATNRS 481 (597)
Q Consensus 402 ~~~~vG~~e~~vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~eqtLnqLL~emdg~~~~~~VIVIaaTNrp 481 (597)
+.+|+|+++..+|++|+.|+....||||+||||+++..|-+.. .+++.+..++..+|++++|||.+..+|-|+.+||+|
T Consensus 248 vqkyvgegarmvrelf~martkkaciiffdeidaiggarfddg-~ggdnevqrtmleli~qldgfdprgnikvlmatnrp 326 (435)
T KOG0729|consen 248 VQKYVGEGARMVRELFEMARTKKACIIFFDEIDAIGGARFDDG-AGGDNEVQRTMLELINQLDGFDPRGNIKVLMATNRP 326 (435)
T ss_pred HHHHhhhhHHHHHHHHHHhcccceEEEEeeccccccCccccCC-CCCcHHHHHHHHHHHHhccCCCCCCCeEEEeecCCC
Confidence 9999999999999999999999999999999999999885542 456778889999999999999999999999999999
Q ss_pred CCCChhhhCCCCcceEEEecCCCHHHHHHHHHHHHhcCCCCCCCCCCHHHHHHhCCCCCHHHHHHHHHHHHHHHHhcCCC
Q 007575 482 DVLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTTGFTGADLANLVNEAALLAGRLNKV 561 (597)
Q Consensus 482 d~LD~aLlRpgRFd~~I~v~~Pd~~eR~eILk~~l~~~~~~l~~dvdl~~LA~~t~G~SgaDL~~Lv~eAal~A~r~~~~ 561 (597)
+.|||||+||||+|+.++|.+||.+.|..|++.|.+. +....++-++.||+.|+.-+|++|+.+|.+|.+.|++..+.
T Consensus 327 dtldpallrpgrldrkvef~lpdlegrt~i~kihaks--msverdir~ellarlcpnstgaeirsvcteagmfairarrk 404 (435)
T KOG0729|consen 327 DTLDPALLRPGRLDRKVEFGLPDLEGRTHIFKIHAKS--MSVERDIRFELLARLCPNSTGAEIRSVCTEAGMFAIRARRK 404 (435)
T ss_pred CCcCHhhcCCcccccceeccCCcccccceeEEEeccc--cccccchhHHHHHhhCCCCcchHHHHHHHHhhHHHHHHHhh
Confidence 9999999999999999999999999999999999864 57788899999999999999999999999999999999999
Q ss_pred cccHHHHHHHHHHHhcccccccc
Q 007575 562 VVEKIDFIHAVERSIAVSLSLSL 584 (597)
Q Consensus 562 ~It~~d~~~Al~~v~~g~~k~s~ 584 (597)
..|..||.+|+++++.|..|-|.
T Consensus 405 ~atekdfl~av~kvvkgy~kfsa 427 (435)
T KOG0729|consen 405 VATEKDFLDAVNKVVKGYAKFSA 427 (435)
T ss_pred hhhHHHHHHHHHHHHHHHHhccC
Confidence 99999999999999999887653
No 11
>KOG0727 consensus 26S proteasome regulatory complex, ATPase RPT3 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=5e-45 Score=361.34 Aligned_cols=254 Identities=44% Similarity=0.696 Sum_probs=240.5
Q ss_pred ccCCCCcccccccCChHHHHHHHHHHHH-hcChhHHhhcCCCCCCceEEeCCCCChHHHHHHHHHHhcCCCeeeechhhh
Q 007575 323 SEQGDTITFADVAGVDEAKEELEEIVEF-LRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEF 401 (597)
Q Consensus 323 ~~~~~~vtf~dV~G~de~k~~L~eiv~~-l~~p~~~~~lg~~~p~gVLL~GPPGTGKT~LArAIA~el~~pfi~is~sef 401 (597)
..+.|.+++.|+.|++-.|++++|.++. +.+.+.|.++|..||+|||||||||||||+||+|+|+.....|+.+.+++|
T Consensus 146 ~~ekpdvsy~diggld~qkqeireavelplt~~~ly~qigidpprgvllygppg~gktml~kava~~t~a~firvvgsef 225 (408)
T KOG0727|consen 146 PDEKPDVSYADIGGLDVQKQEIREAVELPLTHADLYKQIGIDPPRGVLLYGPPGTGKTMLAKAVANHTTAAFIRVVGSEF 225 (408)
T ss_pred CCCCCCccccccccchhhHHHHHHHHhccchHHHHHHHhCCCCCcceEEeCCCCCcHHHHHHHHhhccchheeeeccHHH
Confidence 4567899999999999999999999998 889999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhcchHHHHHHHHHHHhcCCeEEEEcCcchhhhhcCCcccccchhHHHHHHHHHHHHhcCCCCCCcEEEEEecCCC
Q 007575 402 VELYVGMGASRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATNRS 481 (597)
Q Consensus 402 ~~~~vG~~e~~vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~eqtLnqLL~emdg~~~~~~VIVIaaTNrp 481 (597)
+.+|.|++...+|++|+.|+.++|+||||||||+++.+|-+. ..+.+.+..+.+-+||+.||||....+|-||.+||+.
T Consensus 226 vqkylgegprmvrdvfrlakenapsiifideidaiatkrfda-qtgadrevqril~ellnqmdgfdq~~nvkvimatnra 304 (408)
T KOG0727|consen 226 VQKYLGEGPRMVRDVFRLAKENAPSIIFIDEIDAIATKRFDA-QTGADREVQRILIELLNQMDGFDQTTNVKVIMATNRA 304 (408)
T ss_pred HHHHhccCcHHHHHHHHHHhccCCcEEEeehhhhHhhhhccc-cccccHHHHHHHHHHHHhccCcCcccceEEEEecCcc
Confidence 999999999999999999999999999999999999888543 2567789999999999999999999999999999999
Q ss_pred CCCChhhhCCCCcceEEEecCCCHHHHHHHHHHHHhcCCCCCCCCCCHHHHHHhCCCCCHHHHHHHHHHHHHHHHhcCCC
Q 007575 482 DVLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTTGFTGADLANLVNEAALLAGRLNKV 561 (597)
Q Consensus 482 d~LD~aLlRpgRFd~~I~v~~Pd~~eR~eILk~~l~~~~~~l~~dvdl~~LA~~t~G~SgaDL~~Lv~eAal~A~r~~~~ 561 (597)
+.|||+|+||||+|+.|+|++||..+++-++.....+ +.+.+++|++.+..+-+..|++||..+|++|.++|.|.++-
T Consensus 305 dtldpallrpgrldrkiefplpdrrqkrlvf~titsk--m~ls~~vdle~~v~rpdkis~adi~aicqeagm~avr~nry 382 (408)
T KOG0727|consen 305 DTLDPALLRPGRLDRKIEFPLPDRRQKRLVFSTITSK--MNLSDEVDLEDLVARPDKISGADINAICQEAGMLAVRENRY 382 (408)
T ss_pred cccCHhhcCCccccccccCCCCchhhhhhhHHhhhhc--ccCCcccCHHHHhcCccccchhhHHHHHHHHhHHHHHhcce
Confidence 9999999999999999999999999999999998875 57889999999999999999999999999999999999999
Q ss_pred cccHHHHHHHHHHHhccc
Q 007575 562 VVEKIDFIHAVERSIAVS 579 (597)
Q Consensus 562 ~It~~d~~~Al~~v~~g~ 579 (597)
.|...||++|...++...
T Consensus 383 vvl~kd~e~ay~~~vk~~ 400 (408)
T KOG0727|consen 383 VVLQKDFEKAYKTVVKKD 400 (408)
T ss_pred eeeHHHHHHHHHhhcCCc
Confidence 999999999999887443
No 12
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.1e-45 Score=396.14 Aligned_cols=226 Identities=46% Similarity=0.769 Sum_probs=214.1
Q ss_pred CCcccccccCChHHHHHHHHHHHHhcChhHHhhcCCCCCCceEEeCCCCChHHHHHHHHHHhcCCCeeeechhhhHHHHh
Q 007575 327 DTITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFVELYV 406 (597)
Q Consensus 327 ~~vtf~dV~G~de~k~~L~eiv~~l~~p~~~~~lg~~~p~gVLL~GPPGTGKT~LArAIA~el~~pfi~is~sef~~~~v 406 (597)
++++|.|+.|++....+|.+++..+++|+.|..+|..||+|||||||||||||+||+|+|+|+++||++++++++++-+.
T Consensus 185 snv~f~diGG~d~~~~el~~li~~i~~Pe~~~~lGv~PprGvLlHGPPGCGKT~lA~AiAgel~vPf~~isApeivSGvS 264 (802)
T KOG0733|consen 185 SNVSFSDIGGLDKTLAELCELIIHIKHPEVFSSLGVRPPRGVLLHGPPGCGKTSLANAIAGELGVPFLSISAPEIVSGVS 264 (802)
T ss_pred CCcchhhccChHHHHHHHHHHHHHhcCchhHhhcCCCCCCceeeeCCCCccHHHHHHHHhhhcCCceEeecchhhhcccC
Confidence 47899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcchHHHHHHHHHHHhcCCeEEEEcCcchhhhhcCCcccccchhHHHHHHHHHHHHhcCCCCC----CcEEEEEecCCCC
Q 007575 407 GMGASRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSN----SAVIVLGATNRSD 482 (597)
Q Consensus 407 G~~e~~vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~eqtLnqLL~emdg~~~~----~~VIVIaaTNrpd 482 (597)
|++++++|++|++|+..+||||||||||+++++|.. ++.+.-++.+.|||+.||++... .+|+||+||||||
T Consensus 265 GESEkkiRelF~~A~~~aPcivFiDeIDAI~pkRe~----aqreMErRiVaQLlt~mD~l~~~~~~g~~VlVIgATnRPD 340 (802)
T KOG0733|consen 265 GESEKKIRELFDQAKSNAPCIVFIDEIDAITPKREE----AQREMERRIVAQLLTSMDELSNEKTKGDPVLVIGATNRPD 340 (802)
T ss_pred cccHHHHHHHHHHHhccCCeEEEeecccccccchhh----HHHHHHHHHHHHHHHhhhcccccccCCCCeEEEecCCCCc
Confidence 999999999999999999999999999999999874 34455567889999999998654 6799999999999
Q ss_pred CCChhhhCCCCcceEEEecCCCHHHHHHHHHHHHhcCCCCCCCCCCHHHHHHhCCCCCHHHHHHHHHHHHHHHHhc
Q 007575 483 VLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTTGFTGADLANLVNEAALLAGRL 558 (597)
Q Consensus 483 ~LD~aLlRpgRFd~~I~v~~Pd~~eR~eILk~~l~~~~~~l~~dvdl~~LA~~t~G~SgaDL~~Lv~eAal~A~r~ 558 (597)
.|||+|+|+||||+.|.+..|+..+|.+||+..+++ +.+..++|+..||..|+||.|+||..||.+|+..|+++
T Consensus 341 slDpaLRRaGRFdrEI~l~vP~e~aR~~IL~~~~~~--lrl~g~~d~~qlA~lTPGfVGADL~AL~~~Aa~vAikR 414 (802)
T KOG0733|consen 341 SLDPALRRAGRFDREICLGVPSETAREEILRIICRG--LRLSGDFDFKQLAKLTPGFVGADLMALCREAAFVAIKR 414 (802)
T ss_pred ccCHHHhccccccceeeecCCchHHHHHHHHHHHhh--CCCCCCcCHHHHHhcCCCccchhHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999964 67788999999999999999999999999999999887
No 13
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=100.00 E-value=6.3e-44 Score=395.35 Aligned_cols=265 Identities=63% Similarity=0.918 Sum_probs=245.7
Q ss_pred cccCCCCcccccccCChHHHHHHHHHHHHhcChhHHhhcCCCCCCceEEeCCCCChHHHHHHHHHHhcCCCeeeechhhh
Q 007575 322 VSEQGDTITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEF 401 (597)
Q Consensus 322 ~~~~~~~vtf~dV~G~de~k~~L~eiv~~l~~p~~~~~lg~~~p~gVLL~GPPGTGKT~LArAIA~el~~pfi~is~sef 401 (597)
..++.+.++|+||+|.+++|+++.++++++++++.|...|.++|+|+||+||||||||++|+++|+++++||+.++++++
T Consensus 45 ~~~~~~~~~~~di~g~~~~k~~l~~~~~~l~~~~~~~~~g~~~~~giLL~GppGtGKT~la~alA~~~~~~~~~i~~~~~ 124 (495)
T TIGR01241 45 LNEEKPKVTFKDVAGIDEAKEELMEIVDFLKNPSKFTKLGAKIPKGVLLVGPPGTGKTLLAKAVAGEAGVPFFSISGSDF 124 (495)
T ss_pred ccCCCCCCCHHHhCCHHHHHHHHHHHHHHHHCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHHcCCCeeeccHHHH
Confidence 44567899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhcchHHHHHHHHHHHhcCCeEEEEcCcchhhhhcCCcccccchhHHHHHHHHHHHHhcCCCCCCcEEEEEecCCC
Q 007575 402 VELYVGMGASRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATNRS 481 (597)
Q Consensus 402 ~~~~vG~~e~~vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~eqtLnqLL~emdg~~~~~~VIVIaaTNrp 481 (597)
.+.++|.+++.++++|+.|+..+||||||||||.++..++.. ..+.+++..+++++||.+||++....+++||+|||++
T Consensus 125 ~~~~~g~~~~~l~~~f~~a~~~~p~Il~iDEid~l~~~r~~~-~~~~~~~~~~~~~~lL~~~d~~~~~~~v~vI~aTn~~ 203 (495)
T TIGR01241 125 VEMFVGVGASRVRDLFEQAKKNAPCIIFIDEIDAVGRQRGAG-LGGGNDEREQTLNQLLVEMDGFGTNTGVIVIAATNRP 203 (495)
T ss_pred HHHHhcccHHHHHHHHHHHHhcCCCEEEEechhhhhhccccC-cCCccHHHHHHHHHHHhhhccccCCCCeEEEEecCCh
Confidence 999999999999999999999999999999999999887653 2345678889999999999999988899999999999
Q ss_pred CCCChhhhCCCCcceEEEecCCCHHHHHHHHHHHHhcCCCCCCCCCCHHHHHHhCCCCCHHHHHHHHHHHHHHHHhcCCC
Q 007575 482 DVLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTTGFTGADLANLVNEAALLAGRLNKV 561 (597)
Q Consensus 482 d~LD~aLlRpgRFd~~I~v~~Pd~~eR~eILk~~l~~~~~~l~~dvdl~~LA~~t~G~SgaDL~~Lv~eAal~A~r~~~~ 561 (597)
+.||++++||||||+.++++.|+.++|.+|++.++.+. ++..++++..+|..+.||+++||.++|++|+..|.++++.
T Consensus 204 ~~ld~al~r~gRfd~~i~i~~Pd~~~R~~il~~~l~~~--~~~~~~~l~~la~~t~G~sgadl~~l~~eA~~~a~~~~~~ 281 (495)
T TIGR01241 204 DVLDPALLRPGRFDRQVVVDLPDIKGREEILKVHAKNK--KLAPDVDLKAVARRTPGFSGADLANLLNEAALLAARKNKT 281 (495)
T ss_pred hhcCHHHhcCCcceEEEEcCCCCHHHHHHHHHHHHhcC--CCCcchhHHHHHHhCCCCCHHHHHHHHHHHHHHHHHcCCC
Confidence 99999999999999999999999999999999999764 4556788999999999999999999999999999999999
Q ss_pred cccHHHHHHHHHHHhccccccccccchh
Q 007575 562 VVEKIDFIHAVERSIAVSLSLSLSLSLQ 589 (597)
Q Consensus 562 ~It~~d~~~Al~~v~~g~~k~s~~ls~q 589 (597)
.|+.+||+.|++++..+..++...++.+
T Consensus 282 ~i~~~~l~~a~~~~~~~~~~~~~~~~~~ 309 (495)
T TIGR01241 282 EITMNDIEEAIDRVIAGPEKKSRVISEK 309 (495)
T ss_pred CCCHHHHHHHHHHHhcccccccccccHH
Confidence 9999999999999999887766666544
No 14
>KOG0728 consensus 26S proteasome regulatory complex, ATPase RPT6 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=7.6e-45 Score=359.70 Aligned_cols=253 Identities=40% Similarity=0.654 Sum_probs=240.2
Q ss_pred CCCCcccccccCChHHHHHHHHHHHH-hcChhHHhhcCCCCCCceEEeCCCCChHHHHHHHHHHhcCCCeeeechhhhHH
Q 007575 325 QGDTITFADVAGVDEAKEELEEIVEF-LRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFVE 403 (597)
Q Consensus 325 ~~~~vtf~dV~G~de~k~~L~eiv~~-l~~p~~~~~lg~~~p~gVLL~GPPGTGKT~LArAIA~el~~pfi~is~sef~~ 403 (597)
..|..+++=+.|++...++++|+++. .++|+.|..+|...|+|+|||||||||||+||+|+|....+.|+.+++++++.
T Consensus 140 KvPDStYeMiGgLd~QIkeIkEVIeLPvKHPELF~aLGIaQPKGvlLygppgtGktLlaraVahht~c~firvsgselvq 219 (404)
T KOG0728|consen 140 KVPDSTYEMIGGLDKQIKEIKEVIELPVKHPELFEALGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQ 219 (404)
T ss_pred hCCccHHHHhccHHHHHHHHHHHHhccccCHHHHHhcCCCCCcceEEecCCCCchhHHHHHHHhhcceEEEEechHHHHH
Confidence 44677888899999999999999998 89999999999999999999999999999999999999999999999999999
Q ss_pred HHhhcchHHHHHHHHHHHhcCCeEEEEcCcchhhhhcCCcccccchhHHHHHHHHHHHHhcCCCCCCcEEEEEecCCCCC
Q 007575 404 LYVGMGASRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATNRSDV 483 (597)
Q Consensus 404 ~~vG~~e~~vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~eqtLnqLL~emdg~~~~~~VIVIaaTNrpd~ 483 (597)
+|.|++...+|++|-.|+.++|+|||.||||.++..|..+. .+++.+..++..+||+.+|||+...++-||.|||+.|.
T Consensus 220 k~igegsrmvrelfvmarehapsiifmdeidsigs~r~e~~-~ggdsevqrtmlellnqldgfeatknikvimatnridi 298 (404)
T KOG0728|consen 220 KYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSSRVESG-SGGDSEVQRTMLELLNQLDGFEATKNIKVIMATNRIDI 298 (404)
T ss_pred HHhhhhHHHHHHHHHHHHhcCCceEeeecccccccccccCC-CCccHHHHHHHHHHHHhccccccccceEEEEecccccc
Confidence 99999999999999999999999999999999999987654 45788899999999999999999999999999999999
Q ss_pred CChhhhCCCCcceEEEecCCCHHHHHHHHHHHHhcCCCCCCCCCCHHHHHHhCCCCCHHHHHHHHHHHHHHHHhcCCCcc
Q 007575 484 LDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTTGFTGADLANLVNEAALLAGRLNKVVV 563 (597)
Q Consensus 484 LD~aLlRpgRFd~~I~v~~Pd~~eR~eILk~~l~~~~~~l~~dvdl~~LA~~t~G~SgaDL~~Lv~eAal~A~r~~~~~I 563 (597)
|||||+||||.|+.|+|++|+.+.|.+||+.|.++ +.+...+++..+|....|.||+++..+|.+|.+.|.|..+..|
T Consensus 299 ld~allrpgridrkiefp~p~e~ar~~ilkihsrk--mnl~rgi~l~kiaekm~gasgaevk~vcteagm~alrerrvhv 376 (404)
T KOG0728|consen 299 LDPALLRPGRIDRKIEFPPPNEEARLDILKIHSRK--MNLTRGINLRKIAEKMPGASGAEVKGVCTEAGMYALRERRVHV 376 (404)
T ss_pred ccHhhcCCCcccccccCCCCCHHHHHHHHHHhhhh--hchhcccCHHHHHHhCCCCccchhhhhhhhhhHHHHHHhhccc
Confidence 99999999999999999999999999999999976 5778899999999999999999999999999999999999999
Q ss_pred cHHHHHHHHHHHhcccc
Q 007575 564 EKIDFIHAVERSIAVSL 580 (597)
Q Consensus 564 t~~d~~~Al~~v~~g~~ 580 (597)
|++||+-|+.+++....
T Consensus 377 tqedfemav~kvm~k~~ 393 (404)
T KOG0728|consen 377 TQEDFEMAVAKVMQKDS 393 (404)
T ss_pred cHHHHHHHHHHHHhccc
Confidence 99999999999986543
No 15
>KOG0652 consensus 26S proteasome regulatory complex, ATPase RPT5 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=6.8e-45 Score=361.72 Aligned_cols=254 Identities=37% Similarity=0.649 Sum_probs=240.3
Q ss_pred ccCCCCcccccccCChHHHHHHHHHHHH-hcChhHHhhcCCCCCCceEEeCCCCChHHHHHHHHHHhcCCCeeeechhhh
Q 007575 323 SEQGDTITFADVAGVDEAKEELEEIVEF-LRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEF 401 (597)
Q Consensus 323 ~~~~~~vtf~dV~G~de~k~~L~eiv~~-l~~p~~~~~lg~~~p~gVLL~GPPGTGKT~LArAIA~el~~pfi~is~sef 401 (597)
..+.|+-+++|+.|++...++|.+.+.. +.++++|..+|.++|+|+|+|||||||||++|||.|...+..|+.+.++.+
T Consensus 162 vDekPtE~YsDiGGldkQIqELvEAiVLpmth~ekF~~lgi~pPKGvLmYGPPGTGKTlmARAcAaqT~aTFLKLAgPQL 241 (424)
T KOG0652|consen 162 VDEKPTEQYSDIGGLDKQIQELVEAIVLPMTHKEKFENLGIRPPKGVLMYGPPGTGKTLMARACAAQTNATFLKLAGPQL 241 (424)
T ss_pred eccCCcccccccccHHHHHHHHHHHhccccccHHHHHhcCCCCCCceEeeCCCCCcHHHHHHHHHHhccchHHHhcchHH
Confidence 4567788999999999999999998776 899999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhcchHHHHHHHHHHHhcCCeEEEEcCcchhhhhcCCcccccchhHHHHHHHHHHHHhcCCCCCCcEEEEEecCCC
Q 007575 402 VELYVGMGASRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATNRS 481 (597)
Q Consensus 402 ~~~~vG~~e~~vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~eqtLnqLL~emdg~~~~~~VIVIaaTNrp 481 (597)
+.+|.|.+++.+|+.|..|+..+|+||||||+|+++.+|.++ ...++.+..++..+||+.+|||.++..|-|||+|||.
T Consensus 242 VQMfIGdGAkLVRDAFaLAKEkaP~IIFIDElDAIGtKRfDS-ek~GDREVQRTMLELLNQLDGFss~~~vKviAATNRv 320 (424)
T KOG0652|consen 242 VQMFIGDGAKLVRDAFALAKEKAPTIIFIDELDAIGTKRFDS-EKAGDREVQRTMLELLNQLDGFSSDDRVKVIAATNRV 320 (424)
T ss_pred HhhhhcchHHHHHHHHHHhhccCCeEEEEechhhhccccccc-cccccHHHHHHHHHHHHhhcCCCCccceEEEeecccc
Confidence 999999999999999999999999999999999999988654 2456788999999999999999999999999999999
Q ss_pred CCCChhhhCCCCcceEEEecCCCHHHHHHHHHHHHhcCCCCCCCCCCHHHHHHhCCCCCHHHHHHHHHHHHHHHHhcCCC
Q 007575 482 DVLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTTGFTGADLANLVNEAALLAGRLNKV 561 (597)
Q Consensus 482 d~LD~aLlRpgRFd~~I~v~~Pd~~eR~eILk~~l~~~~~~l~~dvdl~~LA~~t~G~SgaDL~~Lv~eAal~A~r~~~~ 561 (597)
+.|||+|+|.||+|+.|+|+.|+.+.|..|++.|.++ +...+++++++||+.|++|+|++...+|-+|.++|.|++..
T Consensus 321 DiLDPALlRSGRLDRKIEfP~Pne~aRarIlQIHsRK--Mnv~~DvNfeELaRsTddFNGAQcKAVcVEAGMiALRr~at 398 (424)
T KOG0652|consen 321 DILDPALLRSGRLDRKIEFPHPNEEARARILQIHSRK--MNVSDDVNFEELARSTDDFNGAQCKAVCVEAGMIALRRGAT 398 (424)
T ss_pred cccCHHHhhcccccccccCCCCChHHHHHHHHHhhhh--cCCCCCCCHHHHhhcccccCchhheeeehhhhHHHHhcccc
Confidence 9999999999999999999999999999999999976 57789999999999999999999999999999999999999
Q ss_pred cccHHHHHHHHHHHhccc
Q 007575 562 VVEKIDFIHAVERSIAVS 579 (597)
Q Consensus 562 ~It~~d~~~Al~~v~~g~ 579 (597)
.|+.+||.+++..+.+..
T Consensus 399 ev~heDfmegI~eVqakK 416 (424)
T KOG0652|consen 399 EVTHEDFMEGILEVQAKK 416 (424)
T ss_pred cccHHHHHHHHHHHHHhh
Confidence 999999999999987643
No 16
>KOG0738 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4e-44 Score=372.15 Aligned_cols=249 Identities=37% Similarity=0.577 Sum_probs=226.7
Q ss_pred cCCCCcccccccCChHHHHHHHHHHHH-hcChhHHhhcCCCCCCceEEeCCCCChHHHHHHHHHHhcCCCeeeechhhhH
Q 007575 324 EQGDTITFADVAGVDEAKEELEEIVEF-LRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFV 402 (597)
Q Consensus 324 ~~~~~vtf~dV~G~de~k~~L~eiv~~-l~~p~~~~~lg~~~p~gVLL~GPPGTGKT~LArAIA~el~~pfi~is~sef~ 402 (597)
...|+++|+||+|++++|+-|+|.|-. +.-|+.| +...+|.+|||++||||||||+||||||.|++..||.|+.+.+.
T Consensus 204 ~~np~ikW~DIagl~~AK~lL~EAVvlPi~mPe~F-~GirrPWkgvLm~GPPGTGKTlLAKAvATEc~tTFFNVSsstlt 282 (491)
T KOG0738|consen 204 QRNPNIKWDDIAGLHEAKKLLKEAVVLPIWMPEFF-KGIRRPWKGVLMVGPPGTGKTLLAKAVATECGTTFFNVSSSTLT 282 (491)
T ss_pred ccCCCcChHhhcchHHHHHHHHHHHhhhhhhHHHH-hhcccccceeeeeCCCCCcHHHHHHHHHHhhcCeEEEechhhhh
Confidence 456889999999999999999999987 6666655 44577889999999999999999999999999999999999999
Q ss_pred HHHhhcchHHHHHHHHHHHhcCCeEEEEcCcchhhhhcCCcccccchhHHHHHHHHHHHHhcCCCCC-C---cEEEEEec
Q 007575 403 ELYVGMGASRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSN-S---AVIVLGAT 478 (597)
Q Consensus 403 ~~~vG~~e~~vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~eqtLnqLL~emdg~~~~-~---~VIVIaaT 478 (597)
++|.|++++.||-+|+.|+.++|++|||||||+|+.+|+.. +.|+..+++-++||.+|||.... . .|+|+|+|
T Consensus 283 SKwRGeSEKlvRlLFemARfyAPStIFiDEIDslcs~RG~s---~EHEaSRRvKsELLvQmDG~~~t~e~~k~VmVLAAT 359 (491)
T KOG0738|consen 283 SKWRGESEKLVRLLFEMARFYAPSTIFIDEIDSLCSQRGGS---SEHEASRRVKSELLVQMDGVQGTLENSKVVMVLAAT 359 (491)
T ss_pred hhhccchHHHHHHHHHHHHHhCCceeehhhHHHHHhcCCCc---cchhHHHHHHHHHHHHhhccccccccceeEEEEecc
Confidence 99999999999999999999999999999999999999863 68889999999999999998763 2 38899999
Q ss_pred CCCCCCChhhhCCCCcceEEEecCCCHHHHHHHHHHHHhcCCCCCCCCCCHHHHHHhCCCCCHHHHHHHHHHHHHHHHhc
Q 007575 479 NRSDVLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTTGFTGADLANLVNEAALLAGRL 558 (597)
Q Consensus 479 Nrpd~LD~aLlRpgRFd~~I~v~~Pd~~eR~eILk~~l~~~~~~l~~dvdl~~LA~~t~G~SgaDL~~Lv~eAal~A~r~ 558 (597)
|.|++||+||+| ||...|++++|+.++|..+|+..+.. .++.++++++.||..++||||+||.++|++|++.+.|+
T Consensus 360 N~PWdiDEAlrR--RlEKRIyIPLP~~~~R~~Li~~~l~~--~~~~~~~~~~~lae~~eGySGaDI~nvCreAsm~~mRR 435 (491)
T KOG0738|consen 360 NFPWDIDEALRR--RLEKRIYIPLPDAEARSALIKILLRS--VELDDPVNLEDLAERSEGYSGADITNVCREASMMAMRR 435 (491)
T ss_pred CCCcchHHHHHH--HHhhheeeeCCCHHHHHHHHHHhhcc--ccCCCCccHHHHHHHhcCCChHHHHHHHHHHHHHHHHH
Confidence 999999999999 99999999999999999999999964 68889999999999999999999999999999999885
Q ss_pred C-----------------CCcccHHHHHHHHHHHhcccc
Q 007575 559 N-----------------KVVVEKIDFIHAVERSIAVSL 580 (597)
Q Consensus 559 ~-----------------~~~It~~d~~~Al~~v~~g~~ 580 (597)
. +..|+.+||++|+.++-+...
T Consensus 436 ~i~g~~~~ei~~lakE~~~~pv~~~Dfe~Al~~v~pSvs 474 (491)
T KOG0738|consen 436 KIAGLTPREIRQLAKEEPKMPVTNEDFEEALRKVRPSVS 474 (491)
T ss_pred HHhcCCcHHhhhhhhhccccccchhhHHHHHHHcCcCCC
Confidence 1 134889999999999876543
No 17
>KOG0726 consensus 26S proteasome regulatory complex, ATPase RPT2 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.7e-44 Score=363.26 Aligned_cols=253 Identities=41% Similarity=0.681 Sum_probs=241.0
Q ss_pred cCCCCcccccccCChHHHHHHHHHHHH-hcChhHHhhcCCCCCCceEEeCCCCChHHHHHHHHHHhcCCCeeeechhhhH
Q 007575 324 EQGDTITFADVAGVDEAKEELEEIVEF-LRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFV 402 (597)
Q Consensus 324 ~~~~~vtf~dV~G~de~k~~L~eiv~~-l~~p~~~~~lg~~~p~gVLL~GPPGTGKT~LArAIA~el~~pfi~is~sef~ 402 (597)
+..|.-+|+|+.|++...++++|.++. +.+|+-|..+|.++|+||+|||+||||||+||+|+|+.....|+.+-+++++
T Consensus 177 eKaP~Ety~diGGle~QiQEiKEsvELPLthPE~YeemGikpPKGVIlyG~PGTGKTLLAKAVANqTSATFlRvvGseLi 256 (440)
T KOG0726|consen 177 EKAPQETYADIGGLESQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGEPGTGKTLLAKAVANQTSATFLRVVGSELI 256 (440)
T ss_pred ccCchhhhcccccHHHHHHHHHHhhcCCCCCHHHHHHcCCCCCCeeEEeCCCCCchhHHHHHHhcccchhhhhhhhHHHH
Confidence 455778999999999999999999998 9999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhcchHHHHHHHHHHHhcCCeEEEEcCcchhhhhcCCcccccchhHHHHHHHHHHHHhcCCCCCCcEEEEEecCCCC
Q 007575 403 ELYVGMGASRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATNRSD 482 (597)
Q Consensus 403 ~~~vG~~e~~vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~eqtLnqLL~emdg~~~~~~VIVIaaTNrpd 482 (597)
.+|.|.+.+.+|++|+.|..++|+|+||||||+++.+|-+. ..++..+..+++.+||+.+|||.+...|-||.|||+.+
T Consensus 257 QkylGdGpklvRqlF~vA~e~apSIvFiDEIdAiGtKRyds-~SggerEiQrtmLELLNQldGFdsrgDvKvimATnrie 335 (440)
T KOG0726|consen 257 QKYLGDGPKLVRELFRVAEEHAPSIVFIDEIDAIGTKRYDS-NSGGEREIQRTMLELLNQLDGFDSRGDVKVIMATNRIE 335 (440)
T ss_pred HHHhccchHHHHHHHHHHHhcCCceEEeehhhhhccccccC-CCccHHHHHHHHHHHHHhccCccccCCeEEEEeccccc
Confidence 99999999999999999999999999999999999998654 35678889999999999999999999999999999999
Q ss_pred CCChhhhCCCCcceEEEecCCCHHHHHHHHHHHHhcCCCCCCCCCCHHHHHHhCCCCCHHHHHHHHHHHHHHHHhcCCCc
Q 007575 483 VLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTTGFTGADLANLVNEAALLAGRLNKVV 562 (597)
Q Consensus 483 ~LD~aLlRpgRFd~~I~v~~Pd~~eR~eILk~~l~~~~~~l~~dvdl~~LA~~t~G~SgaDL~~Lv~eAal~A~r~~~~~ 562 (597)
.|||+|.||||.|+.|+|+.||...++.|+..|..+ +.+..+++++.+.-.-..+||+||..+|.+|.++|.|..+-.
T Consensus 336 ~LDPaLiRPGrIDrKIef~~pDe~TkkkIf~IHTs~--Mtl~~dVnle~li~~kddlSGAdIkAictEaGllAlRerRm~ 413 (440)
T KOG0726|consen 336 TLDPALIRPGRIDRKIEFPLPDEKTKKKIFQIHTSR--MTLAEDVNLEELIMTKDDLSGADIKAICTEAGLLALRERRMK 413 (440)
T ss_pred ccCHhhcCCCccccccccCCCchhhhceeEEEeecc--cchhccccHHHHhhcccccccccHHHHHHHHhHHHHHHHHhh
Confidence 999999999999999999999999999999999865 688999999999988899999999999999999999999999
Q ss_pred ccHHHHHHHHHHHhccc
Q 007575 563 VEKIDFIHAVERSIAVS 579 (597)
Q Consensus 563 It~~d~~~Al~~v~~g~ 579 (597)
|+++||..|.++++-..
T Consensus 414 vt~~DF~ka~e~V~~~K 430 (440)
T KOG0726|consen 414 VTMEDFKKAKEKVLYKK 430 (440)
T ss_pred ccHHHHHHHHHHHHHhc
Confidence 99999999999998655
No 18
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=100.00 E-value=2.8e-43 Score=406.70 Aligned_cols=334 Identities=39% Similarity=0.665 Sum_probs=278.5
Q ss_pred eeEEEecCCCCCchhHH--HHHhCCceecCCCCC---------------------------CcCcHHHHHHHHHHHHHHH
Q 007575 242 RIVYTTTRPSDIKTPYE--KMLENQVEFGSPDKR---------------------------SGGFLNSALIALFYVAVLA 292 (597)
Q Consensus 242 ~~~~~t~~~~~~~~~~~--~~~~~~v~~~~~~~~---------------------------~~~~~~~~l~~l~~~~~l~ 292 (597)
.++.+||+|+.+++++. .+++..+.+..|+.. ++||.++++..+|..+++.
T Consensus 316 ivI~atn~~~~ld~al~r~gRfd~~i~i~~P~~~~R~~Il~~~~~~~~l~~d~~l~~la~~t~G~~gadl~~l~~~a~~~ 395 (733)
T TIGR01243 316 IVIGATNRPDALDPALRRPGRFDREIVIRVPDKRARKEILKVHTRNMPLAEDVDLDKLAEVTHGFVGADLAALAKEAAMA 395 (733)
T ss_pred EEEeecCChhhcCHHHhCchhccEEEEeCCcCHHHHHHHHHHHhcCCCCccccCHHHHHHhCCCCCHHHHHHHHHHHHHH
Confidence 35679999999988876 378888888766522 5789999999999998888
Q ss_pred HHHhhcccc---cccc------cccc--c------c-cccCCCCCCccccCCCCcccccccCChHHHHHHHHHHHH-hcC
Q 007575 293 GLLHRFPVS---FSQT------AGQV--G------H-RKTRGPGGAKVSEQGDTITFADVAGVDEAKEELEEIVEF-LRS 353 (597)
Q Consensus 293 ~~~~~~~~~---~~~~------~~~~--~------~-~~~~~~~~~~~~~~~~~vtf~dV~G~de~k~~L~eiv~~-l~~ 353 (597)
++.+..... .... .... . . ....++.......+.+.++|+|++|++++|++|++.+.+ +++
T Consensus 396 al~r~~~~~~~~~~~~~i~~~~~~~~~v~~~df~~Al~~v~ps~~~~~~~~~~~~~~~di~g~~~~k~~l~~~v~~~~~~ 475 (733)
T TIGR01243 396 ALRRFIREGKINFEAEEIPAEVLKELKVTMKDFMEALKMVEPSAIREVLVEVPNVRWSDIGGLEEVKQELREAVEWPLKH 475 (733)
T ss_pred HHHHHhhccccccccccccchhcccccccHHHHHHHHhhccccccchhhccccccchhhcccHHHHHHHHHHHHHhhhhC
Confidence 766433210 0000 0000 0 0 000111112223456789999999999999999999997 899
Q ss_pred hhHHhhcCCCCCCceEEeCCCCChHHHHHHHHHHhcCCCeeeechhhhHHHHhhcchHHHHHHHHHHHhcCCeEEEEcCc
Q 007575 354 PDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFVELYVGMGASRVRDLFARAKKEAPSIIFIDEI 433 (597)
Q Consensus 354 p~~~~~lg~~~p~gVLL~GPPGTGKT~LArAIA~el~~pfi~is~sef~~~~vG~~e~~vr~lF~~A~~~aP~ILfIDEI 433 (597)
++.|..+|.++|+|+|||||||||||++|+++|++++.+|+.++++++.++|+|++++.++.+|..|+..+|||||||||
T Consensus 476 ~~~~~~~g~~~~~giLL~GppGtGKT~lakalA~e~~~~fi~v~~~~l~~~~vGese~~i~~~f~~A~~~~p~iifiDEi 555 (733)
T TIGR01243 476 PEIFEKMGIRPPKGVLLFGPPGTGKTLLAKAVATESGANFIAVRGPEILSKWVGESEKAIREIFRKARQAAPAIIFFDEI 555 (733)
T ss_pred HHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhcCCCEEEEehHHHhhcccCcHHHHHHHHHHHHHhcCCEEEEEECh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chhhhhcCCcccccchhHHHHHHHHHHHHhcCCCCCCcEEEEEecCCCCCCChhhhCCCCcceEEEecCCCHHHHHHHHH
Q 007575 434 DAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATNRSDVLDPALRRPGRFDRVVMVETPDKIGREAILK 513 (597)
Q Consensus 434 DaL~~~r~~~~~~~~~~e~eqtLnqLL~emdg~~~~~~VIVIaaTNrpd~LD~aLlRpgRFd~~I~v~~Pd~~eR~eILk 513 (597)
|+++..++.. ..+...++.+++||.+||++....+++||+|||+|+.||++++||||||+.+++++|+.++|.+||+
T Consensus 556 d~l~~~r~~~---~~~~~~~~~~~~lL~~ldg~~~~~~v~vI~aTn~~~~ld~allRpgRfd~~i~v~~Pd~~~R~~i~~ 632 (733)
T TIGR01243 556 DAIAPARGAR---FDTSVTDRIVNQLLTEMDGIQELSNVVVIAATNRPDILDPALLRPGRFDRLILVPPPDEEARKEIFK 632 (733)
T ss_pred hhhhccCCCC---CCccHHHHHHHHHHHHhhcccCCCCEEEEEeCCChhhCCHhhcCCCccceEEEeCCcCHHHHHHHHH
Confidence 9999887643 2334567899999999999988889999999999999999999999999999999999999999999
Q ss_pred HHHhcCCCCCCCCCCHHHHHHhCCCCCHHHHHHHHHHHHHHHHhcC------------------CCcccHHHHHHHHHHH
Q 007575 514 VHVSKKELPLAKDIDLGDIASMTTGFTGADLANLVNEAALLAGRLN------------------KVVVEKIDFIHAVERS 575 (597)
Q Consensus 514 ~~l~~~~~~l~~dvdl~~LA~~t~G~SgaDL~~Lv~eAal~A~r~~------------------~~~It~~d~~~Al~~v 575 (597)
.+..+ .++.++++++.||..|+||||+||.++|++|++.|.++. ...|+++||.+|++++
T Consensus 633 ~~~~~--~~~~~~~~l~~la~~t~g~sgadi~~~~~~A~~~a~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~f~~al~~~ 710 (733)
T TIGR01243 633 IHTRS--MPLAEDVDLEELAEMTEGYTGADIEAVCREAAMAALRESIGSPAKEKLEVGEEEFLKDLKVEMRHFLEALKKV 710 (733)
T ss_pred HHhcC--CCCCccCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHhhhccchhhhcccccccccCcccHHHHHHHHHHc
Confidence 98864 577788999999999999999999999999999998741 1369999999999988
Q ss_pred hcccc
Q 007575 576 IAVSL 580 (597)
Q Consensus 576 ~~g~~ 580 (597)
.+...
T Consensus 711 ~ps~~ 715 (733)
T TIGR01243 711 KPSVS 715 (733)
T ss_pred CCCCC
Confidence 66543
No 19
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.2e-42 Score=384.92 Aligned_cols=330 Identities=42% Similarity=0.635 Sum_probs=273.7
Q ss_pred eEEEecCCCCCchhHH--HHHhCCceecCCCC---------------------------CCcCcHHHHHHHHHHHHHHHH
Q 007575 243 IVYTTTRPSDIKTPYE--KMLENQVEFGSPDK---------------------------RSGGFLNSALIALFYVAVLAG 293 (597)
Q Consensus 243 ~~~~t~~~~~~~~~~~--~~~~~~v~~~~~~~---------------------------~~~~~~~~~l~~l~~~~~l~~ 293 (597)
++..|++++.+++++. .+++.++++..++. .+.|+.++.+..+|..+.+..
T Consensus 121 ~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ei~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~l~~~~~~~~ 200 (494)
T COG0464 121 VIGATNRPDGLDPAKRRPGRFDREIEVNLPDEAGRLEILQIHTRLMFLGPPGTGKTLAARTVGKSGADLGALAKEAALRE 200 (494)
T ss_pred EEeecCCccccChhHhCccccceeeecCCCCHHHHHHHHHHHHhcCCCcccccHHHHHHhcCCccHHHHHHHHHHHHHHH
Confidence 3456777776665544 34455554444432 167889999999998888777
Q ss_pred HHhhc---cccccccccccc--ccccCCCCCCccccCCCCcccccccCChHHHHHHHHHHHH-hcChhHHhhcCCCCCCc
Q 007575 294 LLHRF---PVSFSQTAGQVG--HRKTRGPGGAKVSEQGDTITFADVAGVDEAKEELEEIVEF-LRSPDKYIRLGARPPRG 367 (597)
Q Consensus 294 ~~~~~---~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~vtf~dV~G~de~k~~L~eiv~~-l~~p~~~~~lg~~~p~g 367 (597)
+.+.. +.....+..... -.....+ ..+....+.++|+|++|++++|+.+++.+++ +++++.|...+.++|+|
T Consensus 201 ~~r~~~~~~~~~~~~~~~~~~~l~~~~~~--~~~~~~~~~v~~~diggl~~~k~~l~e~v~~~~~~~e~~~~~~~~~~~g 278 (494)
T COG0464 201 LRRAIDLVGEYIGVTEDDFEEALKKVLPS--RGVLFEDEDVTLDDIGGLEEAKEELKEAIETPLKRPELFRKLGLRPPKG 278 (494)
T ss_pred HHhhhccCcccccccHHHHHHHHHhcCcc--cccccCCCCcceehhhcHHHHHHHHHHHHHhHhhChHHHHhcCCCCCCe
Confidence 76532 100000000000 0001111 2334567889999999999999999999999 78999999999999999
Q ss_pred eEEeCCCCChHHHHHHHHHHhcCCCeeeechhhhHHHHhhcchHHHHHHHHHHHhcCCeEEEEcCcchhhhhcCCccccc
Q 007575 368 VLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFVELYVGMGASRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIV 447 (597)
Q Consensus 368 VLL~GPPGTGKT~LArAIA~el~~pfi~is~sef~~~~vG~~e~~vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~ 447 (597)
+|||||||||||+||+|+|.+++.+|+.+.++++.++|+|++++.++.+|..|+..+||||||||+|++...++..
T Consensus 279 iLl~GpPGtGKT~lAkava~~~~~~fi~v~~~~l~sk~vGesek~ir~~F~~A~~~~p~iiFiDEiDs~~~~r~~~---- 354 (494)
T COG0464 279 VLLYGPPGTGKTLLAKAVALESRSRFISVKGSELLSKWVGESEKNIRELFEKARKLAPSIIFIDEIDSLASGRGPS---- 354 (494)
T ss_pred eEEECCCCCCHHHHHHHHHhhCCCeEEEeeCHHHhccccchHHHHHHHHHHHHHcCCCcEEEEEchhhhhccCCCC----
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999988653
Q ss_pred chhHHHHHHHHHHHHhcCCCCCCcEEEEEecCCCCCCChhhhCCCCcceEEEecCCCHHHHHHHHHHHHhcCCCCCCCCC
Q 007575 448 SNDEREQTLNQLLTEMDGFDSNSAVIVLGATNRSDVLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKDI 527 (597)
Q Consensus 448 ~~~e~eqtLnqLL~emdg~~~~~~VIVIaaTNrpd~LD~aLlRpgRFd~~I~v~~Pd~~eR~eILk~~l~~~~~~l~~dv 527 (597)
.+....+++++||.+|++.....+|+||+|||+|+.+|++++||||||+.++|++||..+|.+|++.|+......+..++
T Consensus 355 ~~~~~~r~~~~lL~~~d~~e~~~~v~vi~aTN~p~~ld~a~lR~gRfd~~i~v~~pd~~~r~~i~~~~~~~~~~~~~~~~ 434 (494)
T COG0464 355 EDGSGRRVVGQLLTELDGIEKAEGVLVIAATNRPDDLDPALLRPGRFDRLIYVPLPDLEERLEIFKIHLRDKKPPLAEDV 434 (494)
T ss_pred CchHHHHHHHHHHHHhcCCCccCceEEEecCCCccccCHhhcccCccceEeecCCCCHHHHHHHHHHHhcccCCcchhhh
Confidence 22333789999999999999999999999999999999999999999999999999999999999999987666677899
Q ss_pred CHHHHHHhCCCCCHHHHHHHHHHHHHHHHhcC-CCcccHHHHHHHHHHHhcc
Q 007575 528 DLGDIASMTTGFTGADLANLVNEAALLAGRLN-KVVVEKIDFIHAVERSIAV 578 (597)
Q Consensus 528 dl~~LA~~t~G~SgaDL~~Lv~eAal~A~r~~-~~~It~~d~~~Al~~v~~g 578 (597)
+++.+++.|+||+|+||..+|.+|++.|.++. ...|+++||.+|++++.+.
T Consensus 435 ~~~~l~~~t~~~sgadi~~i~~ea~~~~~~~~~~~~~~~~~~~~a~~~~~p~ 486 (494)
T COG0464 435 DLEELAEITEGYSGADIAALVREAALEALREARRREVTLDDFLDALKKIKPS 486 (494)
T ss_pred hHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHhcCCC
Confidence 99999999999999999999999999999988 7889999999999995443
No 20
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=100.00 E-value=3.7e-43 Score=349.38 Aligned_cols=242 Identities=39% Similarity=0.614 Sum_probs=221.3
Q ss_pred cCCCCcccccccCChHHHHHHHHHHHHhcChhHHhhcCCCCCCceEEeCCCCChHHHHHHHHHHhcCCCeeeechhhhHH
Q 007575 324 EQGDTITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFVE 403 (597)
Q Consensus 324 ~~~~~vtf~dV~G~de~k~~L~eiv~~l~~p~~~~~lg~~~p~gVLL~GPPGTGKT~LArAIA~el~~pfi~is~sef~~ 403 (597)
+..++++|+||+|++++|..-+-++++|++|++|..+ .|++||+|||||||||++|+|+|+++++||+.+...+++.
T Consensus 113 e~~~~it~ddViGqEeAK~kcrli~~yLenPe~Fg~W---APknVLFyGppGTGKTm~Akalane~kvp~l~vkat~liG 189 (368)
T COG1223 113 EIISDITLDDVIGQEEAKRKCRLIMEYLENPERFGDW---APKNVLFYGPPGTGKTMMAKALANEAKVPLLLVKATELIG 189 (368)
T ss_pred hhhccccHhhhhchHHHHHHHHHHHHHhhChHHhccc---CcceeEEECCCCccHHHHHHHHhcccCCceEEechHHHHH
Confidence 4557899999999999999999999999999998654 6899999999999999999999999999999999999999
Q ss_pred HHhhcchHHHHHHHHHHHhcCCeEEEEcCcchhhhhcCCcccccchhHHHHHHHHHHHHhcCCCCCCcEEEEEecCCCCC
Q 007575 404 LYVGMGASRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATNRSDV 483 (597)
Q Consensus 404 ~~vG~~e~~vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~eqtLnqLL~emdg~~~~~~VIVIaaTNrpd~ 483 (597)
.++|.++++++++|+.|++.+|||+||||+|+++-.|.-.. ........+|.||++|||...+.+|+.||+||+|+.
T Consensus 190 ehVGdgar~Ihely~rA~~~aPcivFiDE~DAiaLdRryQe---lRGDVsEiVNALLTelDgi~eneGVvtIaaTN~p~~ 266 (368)
T COG1223 190 EHVGDGARRIHELYERARKAAPCIVFIDELDAIALDRRYQE---LRGDVSEIVNALLTELDGIKENEGVVTIAATNRPEL 266 (368)
T ss_pred HHhhhHHHHHHHHHHHHHhcCCeEEEehhhhhhhhhhhHHH---hcccHHHHHHHHHHhccCcccCCceEEEeecCChhh
Confidence 99999999999999999999999999999999997764221 112345688999999999999999999999999999
Q ss_pred CChhhhCCCCcceEEEecCCCHHHHHHHHHHHHhcCCCCCCCCCCHHHHHHhCCCCCHHHHH-HHHHHHHHHHHhcCCCc
Q 007575 484 LDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTTGFTGADLA-NLVNEAALLAGRLNKVV 562 (597)
Q Consensus 484 LD~aLlRpgRFd~~I~v~~Pd~~eR~eILk~~l~~~~~~l~~dvdl~~LA~~t~G~SgaDL~-~Lv~eAal~A~r~~~~~ 562 (597)
||+++++ ||...|+|.+|+.++|.+|++.++++. ++.-+.+++.++..|.|+||+||. .++..|...|+..+++.
T Consensus 267 LD~aiRs--RFEeEIEF~LP~~eEr~~ile~y~k~~--Plpv~~~~~~~~~~t~g~SgRdikekvlK~aLh~Ai~ed~e~ 342 (368)
T COG1223 267 LDPAIRS--RFEEEIEFKLPNDEERLEILEYYAKKF--PLPVDADLRYLAAKTKGMSGRDIKEKVLKTALHRAIAEDREK 342 (368)
T ss_pred cCHHHHh--hhhheeeeeCCChHHHHHHHHHHHHhC--CCccccCHHHHHHHhCCCCchhHHHHHHHHHHHHHHHhchhh
Confidence 9999999 999999999999999999999999764 566677899999999999999995 57788888999999999
Q ss_pred ccHHHHHHHHHHH
Q 007575 563 VEKIDFIHAVERS 575 (597)
Q Consensus 563 It~~d~~~Al~~v 575 (597)
|+.+||+.|+++-
T Consensus 343 v~~edie~al~k~ 355 (368)
T COG1223 343 VEREDIEKALKKE 355 (368)
T ss_pred hhHHHHHHHHHhh
Confidence 9999999999983
No 21
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=100.00 E-value=3.2e-42 Score=371.31 Aligned_cols=253 Identities=42% Similarity=0.675 Sum_probs=235.4
Q ss_pred cCCCCcccccccCChHHHHHHHHHHHH-hcChhHHhhcCCCCCCceEEeCCCCChHHHHHHHHHHhcCCCeeeechhhhH
Q 007575 324 EQGDTITFADVAGVDEAKEELEEIVEF-LRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFV 402 (597)
Q Consensus 324 ~~~~~vtf~dV~G~de~k~~L~eiv~~-l~~p~~~~~lg~~~p~gVLL~GPPGTGKT~LArAIA~el~~pfi~is~sef~ 402 (597)
.+.|.++|+||+|++.++++|++.+++ +.+|+.|..+|..+|+|+|||||||||||++|+++|++++.+|+.+.++++.
T Consensus 137 ~~~p~v~~~digGl~~~k~~l~~~v~~pl~~~~~~~~~Gl~~pkgvLL~GppGTGKT~LAkalA~~l~~~fi~i~~s~l~ 216 (398)
T PTZ00454 137 SEKPDVTYSDIGGLDIQKQEIREAVELPLTCPELYEQIGIDPPRGVLLYGPPGTGKTMLAKAVAHHTTATFIRVVGSEFV 216 (398)
T ss_pred cCCCCCCHHHcCCHHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhcCCCEEEEehHHHH
Confidence 456889999999999999999999986 8999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhcchHHHHHHHHHHHhcCCeEEEEcCcchhhhhcCCcccccchhHHHHHHHHHHHHhcCCCCCCcEEEEEecCCCC
Q 007575 403 ELYVGMGASRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATNRSD 482 (597)
Q Consensus 403 ~~~vG~~e~~vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~eqtLnqLL~emdg~~~~~~VIVIaaTNrpd 482 (597)
..|+|+++..++++|..|+..+||||||||||.++.++.+.. .+.+.+..+++.+|+..|+++....+++||++||+++
T Consensus 217 ~k~~ge~~~~lr~lf~~A~~~~P~ILfIDEID~i~~~r~~~~-~~~d~~~~r~l~~LL~~ld~~~~~~~v~VI~aTN~~d 295 (398)
T PTZ00454 217 QKYLGEGPRMVRDVFRLARENAPSIIFIDEVDSIATKRFDAQ-TGADREVQRILLELLNQMDGFDQTTNVKVIMATNRAD 295 (398)
T ss_pred HHhcchhHHHHHHHHHHHHhcCCeEEEEECHhhhcccccccc-CCccHHHHHHHHHHHHHhhccCCCCCEEEEEecCCch
Confidence 999999999999999999999999999999999998774321 2334566788999999999998888999999999999
Q ss_pred CCChhhhCCCCcceEEEecCCCHHHHHHHHHHHHhcCCCCCCCCCCHHHHHHhCCCCCHHHHHHHHHHHHHHHHhcCCCc
Q 007575 483 VLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTTGFTGADLANLVNEAALLAGRLNKVV 562 (597)
Q Consensus 483 ~LD~aLlRpgRFd~~I~v~~Pd~~eR~eILk~~l~~~~~~l~~dvdl~~LA~~t~G~SgaDL~~Lv~eAal~A~r~~~~~ 562 (597)
.||++++||||||+.|++++|+.++|.+|++.++.+ +.+..+++++.++..|+||||+||.++|++|++.|.+++...
T Consensus 296 ~LDpAllR~GRfd~~I~~~~P~~~~R~~Il~~~~~~--~~l~~dvd~~~la~~t~g~sgaDI~~l~~eA~~~A~r~~~~~ 373 (398)
T PTZ00454 296 TLDPALLRPGRLDRKIEFPLPDRRQKRLIFQTITSK--MNLSEEVDLEDFVSRPEKISAADIAAICQEAGMQAVRKNRYV 373 (398)
T ss_pred hCCHHHcCCCcccEEEEeCCcCHHHHHHHHHHHHhc--CCCCcccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHcCCCc
Confidence 999999999999999999999999999999999875 467788999999999999999999999999999999999999
Q ss_pred ccHHHHHHHHHHHhccc
Q 007575 563 VEKIDFIHAVERSIAVS 579 (597)
Q Consensus 563 It~~d~~~Al~~v~~g~ 579 (597)
|+.+||.+|+++++.+.
T Consensus 374 i~~~df~~A~~~v~~~~ 390 (398)
T PTZ00454 374 ILPKDFEKGYKTVVRKT 390 (398)
T ss_pred cCHHHHHHHHHHHHhcc
Confidence 99999999999998764
No 22
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=100.00 E-value=5.1e-41 Score=361.83 Aligned_cols=256 Identities=46% Similarity=0.749 Sum_probs=237.0
Q ss_pred cCCCCcccccccCChHHHHHHHHHHHH-hcChhHHhhcCCCCCCceEEeCCCCChHHHHHHHHHHhcCCCeeeechhhhH
Q 007575 324 EQGDTITFADVAGVDEAKEELEEIVEF-LRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFV 402 (597)
Q Consensus 324 ~~~~~vtf~dV~G~de~k~~L~eiv~~-l~~p~~~~~lg~~~p~gVLL~GPPGTGKT~LArAIA~el~~pfi~is~sef~ 402 (597)
.+.|.++|+||+|.++++++|.+.+.. +.+++.|..+|..+|++||||||||||||++|+++|.+++.+|+.++++++.
T Consensus 123 ~~~p~~~~~di~Gl~~~~~~l~~~i~~pl~~~~~~~~~g~~~p~gvLL~GppGtGKT~lAkaia~~~~~~~i~v~~~~l~ 202 (389)
T PRK03992 123 IESPNVTYEDIGGLEEQIREVREAVELPLKKPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHETNATFIRVVGSELV 202 (389)
T ss_pred cCCCCCCHHHhCCcHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCceEEECCCCCChHHHHHHHHHHhCCCEEEeehHHHh
Confidence 456789999999999999999999987 8999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhcchHHHHHHHHHHHhcCCeEEEEcCcchhhhhcCCcccccchhHHHHHHHHHHHHhcCCCCCCcEEEEEecCCCC
Q 007575 403 ELYVGMGASRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATNRSD 482 (597)
Q Consensus 403 ~~~vG~~e~~vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~eqtLnqLL~emdg~~~~~~VIVIaaTNrpd 482 (597)
..|.|.++..++.+|..|+..+||||||||||.++..+++.. ..++.+..+++.+++.+++++....+++||+|||+++
T Consensus 203 ~~~~g~~~~~i~~~f~~a~~~~p~IlfiDEiD~l~~~r~~~~-~~~~~~~~~~l~~lL~~ld~~~~~~~v~VI~aTn~~~ 281 (389)
T PRK03992 203 QKFIGEGARLVRELFELAREKAPSIIFIDEIDAIAAKRTDSG-TSGDREVQRTLMQLLAEMDGFDPRGNVKIIAATNRID 281 (389)
T ss_pred HhhccchHHHHHHHHHHHHhcCCeEEEEechhhhhcccccCC-CCccHHHHHHHHHHHHhccccCCCCCEEEEEecCChh
Confidence 999999999999999999999999999999999998776432 2234566788999999999998888999999999999
Q ss_pred CCChhhhCCCCcceEEEecCCCHHHHHHHHHHHHhcCCCCCCCCCCHHHHHHhCCCCCHHHHHHHHHHHHHHHHhcCCCc
Q 007575 483 VLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTTGFTGADLANLVNEAALLAGRLNKVV 562 (597)
Q Consensus 483 ~LD~aLlRpgRFd~~I~v~~Pd~~eR~eILk~~l~~~~~~l~~dvdl~~LA~~t~G~SgaDL~~Lv~eAal~A~r~~~~~ 562 (597)
.+|++++||||||+.|+|++|+.++|.+||+.++.+ .++..++++..+|..|+||+|+||.++|++|++.|.+++...
T Consensus 282 ~ld~allRpgRfd~~I~v~~P~~~~R~~Il~~~~~~--~~~~~~~~~~~la~~t~g~sgadl~~l~~eA~~~a~~~~~~~ 359 (389)
T PRK03992 282 ILDPAILRPGRFDRIIEVPLPDEEGRLEILKIHTRK--MNLADDVDLEELAELTEGASGADLKAICTEAGMFAIRDDRTE 359 (389)
T ss_pred hCCHHHcCCccCceEEEECCCCHHHHHHHHHHHhcc--CCCCCcCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHcCCCC
Confidence 999999999999999999999999999999999865 466677899999999999999999999999999999999999
Q ss_pred ccHHHHHHHHHHHhcccccc
Q 007575 563 VEKIDFIHAVERSIAVSLSL 582 (597)
Q Consensus 563 It~~d~~~Al~~v~~g~~k~ 582 (597)
|+.+||.+|++++.++..+.
T Consensus 360 i~~~d~~~A~~~~~~~~~~~ 379 (389)
T PRK03992 360 VTMEDFLKAIEKVMGKEEKD 379 (389)
T ss_pred cCHHHHHHHHHHHhcccccc
Confidence 99999999999998877554
No 23
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=6.5e-41 Score=367.09 Aligned_cols=281 Identities=36% Similarity=0.559 Sum_probs=234.6
Q ss_pred CCCcCcHHHHHHHHHHHHHHHHHHhhccccccc-cccccc--ccccCCCCCCccc-cCCCCcccccccCChHHHHHHHHH
Q 007575 272 KRSGGFLNSALIALFYVAVLAGLLHRFPVSFSQ-TAGQVG--HRKTRGPGGAKVS-EQGDTITFADVAGVDEAKEELEEI 347 (597)
Q Consensus 272 ~~~~~~~~~~l~~l~~~~~l~~~~~~~~~~~~~-~~~~~~--~~~~~~~~~~~~~-~~~~~vtf~dV~G~de~k~~L~ei 347 (597)
.++.||...||..+.--++..+++.+....-.- +.+... ...+.+..-+.+. .....+.|+|++|+.++|+.|+++
T Consensus 603 ~~TEGy~~~DL~ifVeRai~~a~leris~~~klltke~f~ksL~~F~P~aLR~ik~~k~tgi~w~digg~~~~k~~l~~~ 682 (952)
T KOG0735|consen 603 VKTEGYLATDLVIFVERAIHEAFLERISNGPKLLTKELFEKSLKDFVPLALRGIKLVKSTGIRWEDIGGLFEAKKVLEEV 682 (952)
T ss_pred HhcCCccchhHHHHHHHHHHHHHHHHhccCcccchHHHHHHHHHhcChHHhhhccccccCCCCceecccHHHHHHHHHHH
Confidence 357899988887776666665553332111000 000000 0001111111111 122349999999999999999999
Q ss_pred HHH-hcChhHHhhcCCCCCCceEEeCCCCChHHHHHHHHHHhcCCCeeeechhhhHHHHhhcchHHHHHHHHHHHhcCCe
Q 007575 348 VEF-LRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFVELYVGMGASRVRDLFARAKKEAPS 426 (597)
Q Consensus 348 v~~-l~~p~~~~~lg~~~p~gVLL~GPPGTGKT~LArAIA~el~~pfi~is~sef~~~~vG~~e~~vr~lF~~A~~~aP~ 426 (597)
+++ -+.|..|...+.+.+.|||||||||||||+||-|+|..+++.|+++.++++..+|.|.+++.+|++|.+|+..+||
T Consensus 683 i~~P~kyp~if~~~plr~~~giLLyGppGcGKT~la~a~a~~~~~~fisvKGPElL~KyIGaSEq~vR~lF~rA~~a~PC 762 (952)
T KOG0735|consen 683 IEWPSKYPQIFANCPLRLRTGILLYGPPGCGKTLLASAIASNSNLRFISVKGPELLSKYIGASEQNVRDLFERAQSAKPC 762 (952)
T ss_pred HhccccchHHHhhCCcccccceEEECCCCCcHHHHHHHHHhhCCeeEEEecCHHHHHHHhcccHHHHHHHHHHhhccCCe
Confidence 999 7899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEcCcchhhhhcCCcccccchhHHHHHHHHHHHHhcCCCCCCcEEEEEecCCCCCCChhhhCCCCcceEEEecCCCHH
Q 007575 427 IIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATNRSDVLDPALRRPGRFDRVVMVETPDKI 506 (597)
Q Consensus 427 ILfIDEIDaL~~~r~~~~~~~~~~e~eqtLnqLL~emdg~~~~~~VIVIaaTNrpd~LD~aLlRpgRFd~~I~v~~Pd~~ 506 (597)
|||+||+|.++++|+.+ +....++++||||++|||.++-.+|.|+|||.|||.+||||+||||+|+.++.+.|+..
T Consensus 763 iLFFDEfdSiAPkRGhD----sTGVTDRVVNQlLTelDG~Egl~GV~i~aaTsRpdliDpALLRpGRlD~~v~C~~P~~~ 838 (952)
T KOG0735|consen 763 ILFFDEFDSIAPKRGHD----STGVTDRVVNQLLTELDGAEGLDGVYILAATSRPDLIDPALLRPGRLDKLVYCPLPDEP 838 (952)
T ss_pred EEEeccccccCcccCCC----CCCchHHHHHHHHHhhccccccceEEEEEecCCccccCHhhcCCCccceeeeCCCCCcH
Confidence 99999999999999864 33456799999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCCCCCCCCCCHHHHHHhCCCCCHHHHHHHHHHHHHHHHhc
Q 007575 507 GREAILKVHVSKKELPLAKDIDLGDIASMTTGFTGADLANLVNEAALLAGRL 558 (597)
Q Consensus 507 eR~eILk~~l~~~~~~l~~dvdl~~LA~~t~G~SgaDL~~Lv~eAal~A~r~ 558 (597)
+|.+|++.+... ..++.++|++.+|..|+||||+||..++-.|.+.|..+
T Consensus 839 eRl~il~~ls~s--~~~~~~vdl~~~a~~T~g~tgADlq~ll~~A~l~avh~ 888 (952)
T KOG0735|consen 839 ERLEILQVLSNS--LLKDTDVDLECLAQKTDGFTGADLQSLLYNAQLAAVHE 888 (952)
T ss_pred HHHHHHHHHhhc--cCCccccchHHHhhhcCCCchhhHHHHHHHHHHHHHHH
Confidence 999999999865 46778999999999999999999999999999888664
No 24
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=100.00 E-value=1.9e-40 Score=360.32 Aligned_cols=252 Identities=42% Similarity=0.686 Sum_probs=234.1
Q ss_pred cCCCCcccccccCChHHHHHHHHHHHH-hcChhHHhhcCCCCCCceEEeCCCCChHHHHHHHHHHhcCCCeeeechhhhH
Q 007575 324 EQGDTITFADVAGVDEAKEELEEIVEF-LRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFV 402 (597)
Q Consensus 324 ~~~~~vtf~dV~G~de~k~~L~eiv~~-l~~p~~~~~lg~~~p~gVLL~GPPGTGKT~LArAIA~el~~pfi~is~sef~ 402 (597)
++.|.++|+||.|+++++++|.++++. +.+++.|..+|..+|+++|||||||||||++|+++|++++.+|+.+.++++.
T Consensus 175 ~~~p~~~~~DIgGl~~qi~~l~e~v~lpl~~p~~~~~~gi~~p~gVLL~GPPGTGKT~LAraIA~el~~~fi~V~~seL~ 254 (438)
T PTZ00361 175 DKAPLESYADIGGLEQQIQEIKEAVELPLTHPELYDDIGIKPPKGVILYGPPGTGKTLLAKAVANETSATFLRVVGSELI 254 (438)
T ss_pred ccCCCCCHHHhcCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHhhCCCEEEEecchhh
Confidence 355789999999999999999999986 8999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhcchHHHHHHHHHHHhcCCeEEEEcCcchhhhhcCCcccccchhHHHHHHHHHHHHhcCCCCCCcEEEEEecCCCC
Q 007575 403 ELYVGMGASRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATNRSD 482 (597)
Q Consensus 403 ~~~vG~~e~~vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~eqtLnqLL~emdg~~~~~~VIVIaaTNrpd 482 (597)
..|.|.++..++++|..|..+.||||||||||+++.++.... .++..+..+++.+||..||++....++.||+|||+++
T Consensus 255 ~k~~Ge~~~~vr~lF~~A~~~~P~ILfIDEID~l~~kR~~~~-sgg~~e~qr~ll~LL~~Ldg~~~~~~V~VI~ATNr~d 333 (438)
T PTZ00361 255 QKYLGDGPKLVRELFRVAEENAPSIVFIDEIDAIGTKRYDAT-SGGEKEIQRTMLELLNQLDGFDSRGDVKVIMATNRIE 333 (438)
T ss_pred hhhcchHHHHHHHHHHHHHhCCCcEEeHHHHHHHhccCCCCC-CcccHHHHHHHHHHHHHHhhhcccCCeEEEEecCChH
Confidence 999999999999999999999999999999999998775432 2345566788899999999998888999999999999
Q ss_pred CCChhhhCCCCcceEEEecCCCHHHHHHHHHHHHhcCCCCCCCCCCHHHHHHhCCCCCHHHHHHHHHHHHHHHHhcCCCc
Q 007575 483 VLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTTGFTGADLANLVNEAALLAGRLNKVV 562 (597)
Q Consensus 483 ~LD~aLlRpgRFd~~I~v~~Pd~~eR~eILk~~l~~~~~~l~~dvdl~~LA~~t~G~SgaDL~~Lv~eAal~A~r~~~~~ 562 (597)
.||++++||||||+.|+|++|+.++|.+||+.++.+ +.+.++++++.++..++||+|+||.++|++|++.|.+++...
T Consensus 334 ~LDpaLlRpGRfd~~I~~~~Pd~~~R~~Il~~~~~k--~~l~~dvdl~~la~~t~g~sgAdI~~i~~eA~~~Alr~~r~~ 411 (438)
T PTZ00361 334 SLDPALIRPGRIDRKIEFPNPDEKTKRRIFEIHTSK--MTLAEDVDLEEFIMAKDELSGADIKAICTEAGLLALRERRMK 411 (438)
T ss_pred HhhHHhccCCeeEEEEEeCCCCHHHHHHHHHHHHhc--CCCCcCcCHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhcCCc
Confidence 999999999999999999999999999999999875 467788999999999999999999999999999999999999
Q ss_pred ccHHHHHHHHHHHhcc
Q 007575 563 VEKIDFIHAVERSIAV 578 (597)
Q Consensus 563 It~~d~~~Al~~v~~g 578 (597)
|+.+||..|+++++..
T Consensus 412 Vt~~D~~~A~~~v~~~ 427 (438)
T PTZ00361 412 VTQADFRKAKEKVLYR 427 (438)
T ss_pred cCHHHHHHHHHHHHhh
Confidence 9999999999998654
No 25
>CHL00206 ycf2 Ycf2; Provisional
Probab=100.00 E-value=1.3e-40 Score=394.86 Aligned_cols=222 Identities=23% Similarity=0.312 Sum_probs=195.6
Q ss_pred hHHhhcCCCCCCceEEeCCCCChHHHHHHHHHHhcCCCeeeechhhhHHHH-----------------------------
Q 007575 355 DKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFVELY----------------------------- 405 (597)
Q Consensus 355 ~~~~~lg~~~p~gVLL~GPPGTGKT~LArAIA~el~~pfi~is~sef~~~~----------------------------- 405 (597)
..+.++|+.+|+||||+||||||||+||||+|+++++||+.+++++|++.+
T Consensus 1620 P~slrLGl~pPKGILLiGPPGTGKTlLAKALA~es~VPFIsISgs~fl~~~~~~~~~d~i~iges~~~~~~~~~~~~~~~ 1699 (2281)
T CHL00206 1620 PFSLRLALSPSRGILVIGSIGTGRSYLVKYLATNSYVPFITVFLNKFLDNKPKGFLIDDIDIDDSDDIDDSDDIDRDLDT 1699 (2281)
T ss_pred CHHHHcCCCCCCceEEECCCCCCHHHHHHHHHHhcCCceEEEEHHHHhhcccccccccccccccccccccccccccccch
Confidence 455788999999999999999999999999999999999999999998643
Q ss_pred --------------hhcchHHHHHHHHHHHhcCCeEEEEcCcchhhhhcCCcccccchhHHHHHHHHHHHHhcCCC---C
Q 007575 406 --------------VGMGASRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFD---S 468 (597)
Q Consensus 406 --------------vG~~e~~vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~eqtLnqLL~emdg~~---~ 468 (597)
++++..+++++|+.|++++||||||||||+|+... +...++++|+++|++.. .
T Consensus 1700 e~~e~~n~~~~~m~~~e~~~rIr~lFelARk~SPCIIFIDEIDaL~~~d----------s~~ltL~qLLneLDg~~~~~s 1769 (2281)
T CHL00206 1700 ELLTMMNALTMDMMPKIDRFYITLQFELAKAMSPCIIWIPNIHDLNVNE----------SNYLSLGLLVNSLSRDCERCS 1769 (2281)
T ss_pred hhhhhcchhhhhhhhhhhHHHHHHHHHHHHHCCCeEEEEEchhhcCCCc----------cceehHHHHHHHhccccccCC
Confidence 12234459999999999999999999999998542 23457899999999874 4
Q ss_pred CCcEEEEEecCCCCCCChhhhCCCCcceEEEecCCCHHHHHHHHHHHHhcCCCCCCCC-CCHHHHHHhCCCCCHHHHHHH
Q 007575 469 NSAVIVLGATNRSDVLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKD-IDLGDIASMTTGFTGADLANL 547 (597)
Q Consensus 469 ~~~VIVIaaTNrpd~LD~aLlRpgRFd~~I~v~~Pd~~eR~eILk~~l~~~~~~l~~d-vdl~~LA~~t~G~SgaDL~~L 547 (597)
..+|+||||||+|+.|||||+||||||++|.|+.|+..+|++++..++..+++++.++ ++++.+|+.|.||+||||+++
T Consensus 1770 ~~~VIVIAATNRPD~LDPALLRPGRFDR~I~Ir~Pd~p~R~kiL~ILl~tkg~~L~~~~vdl~~LA~~T~GfSGADLanL 1849 (2281)
T CHL00206 1770 TRNILVIASTHIPQKVDPALIAPNKLNTCIKIRRLLIPQQRKHFFTLSYTRGFHLEKKMFHTNGFGSITMGSNARDLVAL 1849 (2281)
T ss_pred CCCEEEEEeCCCcccCCHhHcCCCCCCeEEEeCCCCchhHHHHHHHHHhhcCCCCCcccccHHHHHHhCCCCCHHHHHHH
Confidence 5689999999999999999999999999999999999999999987765556676654 689999999999999999999
Q ss_pred HHHHHHHHHhcCCCcccHHHHHHHHHHHhcccccccccc
Q 007575 548 VNEAALLAGRLNKVVVEKIDFIHAVERSIAVSLSLSLSL 586 (597)
Q Consensus 548 v~eAal~A~r~~~~~It~~d~~~Al~~v~~g~~k~s~~l 586 (597)
|+||++.|+++++..|+.++|+.|++++++|.+++.+..
T Consensus 1850 vNEAaliAirq~ks~Id~~~I~~Al~Rq~~g~~~~~~~~ 1888 (2281)
T CHL00206 1850 TNEALSISITQKKSIIDTNTIRSALHRQTWDLRSQVRSV 1888 (2281)
T ss_pred HHHHHHHHHHcCCCccCHHHHHHHHHHHHhhhhhcccCc
Confidence 999999999999999999999999999999987654333
No 26
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2e-40 Score=334.87 Aligned_cols=229 Identities=37% Similarity=0.627 Sum_probs=208.1
Q ss_pred cccCCCCcccccccCChHHHHHHHHHHHH-hcChhHHhhcCCCCCCceEEeCCCCChHHHHHHHHHHhcCCCeeeechhh
Q 007575 322 VSEQGDTITFADVAGVDEAKEELEEIVEF-LRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASE 400 (597)
Q Consensus 322 ~~~~~~~vtf~dV~G~de~k~~L~eiv~~-l~~p~~~~~lg~~~p~gVLL~GPPGTGKT~LArAIA~el~~pfi~is~se 400 (597)
+..+.|++.|+||+|++.+|+.|+|.|-. ++.|+.|.. +..|.+|+||||||||||++||+|+|.|++..||+++.++
T Consensus 123 Iv~EKPNVkWsDVAGLE~AKeALKEAVILPIKFPqlFtG-kR~PwrgiLLyGPPGTGKSYLAKAVATEAnSTFFSvSSSD 201 (439)
T KOG0739|consen 123 IVREKPNVKWSDVAGLEGAKEALKEAVILPIKFPQLFTG-KRKPWRGILLYGPPGTGKSYLAKAVATEANSTFFSVSSSD 201 (439)
T ss_pred hhccCCCCchhhhccchhHHHHHHhheeecccchhhhcC-CCCcceeEEEeCCCCCcHHHHHHHHHhhcCCceEEeehHH
Confidence 34577999999999999999999998876 777776653 4567899999999999999999999999999999999999
Q ss_pred hHHHHhhcchHHHHHHHHHHHhcCCeEEEEcCcchhhhhcCCcccccchhHHHHHHHHHHHHhcCCCC-CCcEEEEEecC
Q 007575 401 FVELYVGMGASRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDS-NSAVIVLGATN 479 (597)
Q Consensus 401 f~~~~vG~~e~~vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~eqtLnqLL~emdg~~~-~~~VIVIaaTN 479 (597)
++++|+|++++.++++|+.|+.+.|+||||||||.++..|++ +.++..+++-.+||.+|+|... +.+|+|++|||
T Consensus 202 LvSKWmGESEkLVknLFemARe~kPSIIFiDEiDslcg~r~e----nEseasRRIKTEfLVQMqGVG~d~~gvLVLgATN 277 (439)
T KOG0739|consen 202 LVSKWMGESEKLVKNLFEMARENKPSIIFIDEIDSLCGSRSE----NESEASRRIKTEFLVQMQGVGNDNDGVLVLGATN 277 (439)
T ss_pred HHHHHhccHHHHHHHHHHHHHhcCCcEEEeehhhhhccCCCC----CchHHHHHHHHHHHHhhhccccCCCceEEEecCC
Confidence 999999999999999999999999999999999999998864 4667788888999999999865 57899999999
Q ss_pred CCCCCChhhhCCCCcceEEEecCCCHHHHHHHHHHHHhcCCCCCCCCCCHHHHHHhCCCCCHHHHHHHHHHHHHHHHhc
Q 007575 480 RSDVLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTTGFTGADLANLVNEAALLAGRL 558 (597)
Q Consensus 480 rpd~LD~aLlRpgRFd~~I~v~~Pd~~eR~eILk~~l~~~~~~l~~dvdl~~LA~~t~G~SgaDL~~Lv~eAal~A~r~ 558 (597)
.|+.||.|++| ||++.|++++|+...|..+++.|+......+.+ .|+.+|++.|+||||+||.-+|+.|.+.-.|+
T Consensus 278 iPw~LDsAIRR--RFekRIYIPLPe~~AR~~MF~lhlG~tp~~LT~-~d~~eL~~kTeGySGsDisivVrDalmePvRk 353 (439)
T KOG0739|consen 278 IPWVLDSAIRR--RFEKRIYIPLPEAHARARMFKLHLGDTPHVLTE-QDFKELARKTEGYSGSDISIVVRDALMEPVRK 353 (439)
T ss_pred CchhHHHHHHH--HhhcceeccCCcHHHhhhhheeccCCCccccch-hhHHHHHhhcCCCCcCceEEEehhhhhhhHHH
Confidence 99999999999 999999999999999999999999877666654 48999999999999999999999988877664
No 27
>CHL00195 ycf46 Ycf46; Provisional
Probab=100.00 E-value=6.8e-39 Score=352.71 Aligned_cols=245 Identities=27% Similarity=0.446 Sum_probs=217.5
Q ss_pred CCcccccccCChHHHHHHHHHHHHhcChhHHhhcCCCCCCceEEeCCCCChHHHHHHHHHHhcCCCeeeechhhhHHHHh
Q 007575 327 DTITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFVELYV 406 (597)
Q Consensus 327 ~~vtf~dV~G~de~k~~L~eiv~~l~~p~~~~~lg~~~p~gVLL~GPPGTGKT~LArAIA~el~~pfi~is~sef~~~~v 406 (597)
+.++|+||+|++.+|+.|.+....+ +..+...|.++|+|+|||||||||||++|+++|++++.||+.++++.+...|+
T Consensus 223 ~~~~~~dvgGl~~lK~~l~~~~~~~--~~~~~~~gl~~pkGILL~GPpGTGKTllAkaiA~e~~~~~~~l~~~~l~~~~v 300 (489)
T CHL00195 223 VNEKISDIGGLDNLKDWLKKRSTSF--SKQASNYGLPTPRGLLLVGIQGTGKSLTAKAIANDWQLPLLRLDVGKLFGGIV 300 (489)
T ss_pred CCCCHHHhcCHHHHHHHHHHHHHHh--hHHHHhcCCCCCceEEEECCCCCcHHHHHHHHHHHhCCCEEEEEhHHhccccc
Confidence 5688999999999999999876543 23445678999999999999999999999999999999999999999999999
Q ss_pred hcchHHHHHHHHHHHhcCCeEEEEcCcchhhhhcCCcccccchhHHHHHHHHHHHHhcCCCCCCcEEEEEecCCCCCCCh
Q 007575 407 GMGASRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATNRSDVLDP 486 (597)
Q Consensus 407 G~~e~~vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~eqtLnqLL~emdg~~~~~~VIVIaaTNrpd~LD~ 486 (597)
|+++.+++++|+.|+..+||||||||||.++..++. .+......+++++|+..|++ ...+|+||+|||+++.||+
T Consensus 301 Gese~~l~~~f~~A~~~~P~IL~IDEID~~~~~~~~---~~d~~~~~rvl~~lL~~l~~--~~~~V~vIaTTN~~~~Ld~ 375 (489)
T CHL00195 301 GESESRMRQMIRIAEALSPCILWIDEIDKAFSNSES---KGDSGTTNRVLATFITWLSE--KKSPVFVVATANNIDLLPL 375 (489)
T ss_pred ChHHHHHHHHHHHHHhcCCcEEEehhhhhhhccccC---CCCchHHHHHHHHHHHHHhc--CCCceEEEEecCChhhCCH
Confidence 999999999999999999999999999999865432 12345667889999999984 4567999999999999999
Q ss_pred hhhCCCCcceEEEecCCCHHHHHHHHHHHHhcCCCCCCCCCCHHHHHHhCCCCCHHHHHHHHHHHHHHHHhcCCCcccHH
Q 007575 487 ALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTTGFTGADLANLVNEAALLAGRLNKVVVEKI 566 (597)
Q Consensus 487 aLlRpgRFd~~I~v~~Pd~~eR~eILk~~l~~~~~~l~~dvdl~~LA~~t~G~SgaDL~~Lv~eAal~A~r~~~~~It~~ 566 (597)
+++|+||||+.++++.|+.++|.+||+.|+.+.......+.+++.||..|+||||+||+++|++|+..|..+++ .++.+
T Consensus 376 allR~GRFD~~i~v~lP~~~eR~~Il~~~l~~~~~~~~~~~dl~~La~~T~GfSGAdI~~lv~eA~~~A~~~~~-~lt~~ 454 (489)
T CHL00195 376 EILRKGRFDEIFFLDLPSLEEREKIFKIHLQKFRPKSWKKYDIKKLSKLSNKFSGAEIEQSIIEAMYIAFYEKR-EFTTD 454 (489)
T ss_pred HHhCCCcCCeEEEeCCcCHHHHHHHHHHHHhhcCCCcccccCHHHHHhhcCCCCHHHHHHHHHHHHHHHHHcCC-CcCHH
Confidence 99999999999999999999999999999987543334578899999999999999999999999999987664 58999
Q ss_pred HHHHHHHHHhccc
Q 007575 567 DFIHAVERSIAVS 579 (597)
Q Consensus 567 d~~~Al~~v~~g~ 579 (597)
||..|+.++.+.+
T Consensus 455 dl~~a~~~~~Pls 467 (489)
T CHL00195 455 DILLALKQFIPLA 467 (489)
T ss_pred HHHHHHHhcCCCc
Confidence 9999999998865
No 28
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=100.00 E-value=6.2e-38 Score=334.88 Aligned_cols=249 Identities=50% Similarity=0.779 Sum_probs=229.6
Q ss_pred cCCCCcccccccCChHHHHHHHHHHHH-hcChhHHhhcCCCCCCceEEeCCCCChHHHHHHHHHHhcCCCeeeechhhhH
Q 007575 324 EQGDTITFADVAGVDEAKEELEEIVEF-LRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFV 402 (597)
Q Consensus 324 ~~~~~vtf~dV~G~de~k~~L~eiv~~-l~~p~~~~~lg~~~p~gVLL~GPPGTGKT~LArAIA~el~~pfi~is~sef~ 402 (597)
.+.|.++|+|++|.++++++|.+.+.. +.+++.|..+|..+|+|+||+||||||||++|+++|++++.+|+.+.++++.
T Consensus 114 ~~~p~~~~~di~Gl~~~~~~l~~~i~~~~~~~~~~~~~g~~~p~gvLL~GppGtGKT~lakaia~~l~~~~~~v~~~~l~ 193 (364)
T TIGR01242 114 EERPNVSYEDIGGLEEQIREIREAVELPLKHPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHETNATFIRVVGSELV 193 (364)
T ss_pred ccCCCCCHHHhCChHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhCCCCEEecchHHHH
Confidence 456889999999999999999999986 7899999999999999999999999999999999999999999999999999
Q ss_pred HHHhhcchHHHHHHHHHHHhcCCeEEEEcCcchhhhhcCCcccccchhHHHHHHHHHHHHhcCCCCCCcEEEEEecCCCC
Q 007575 403 ELYVGMGASRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATNRSD 482 (597)
Q Consensus 403 ~~~vG~~e~~vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~eqtLnqLL~emdg~~~~~~VIVIaaTNrpd 482 (597)
..+.|.+...++++|+.++...||||||||+|.++..+.... .+...+..+++.+++.+++++....++.||+|||+++
T Consensus 194 ~~~~g~~~~~i~~~f~~a~~~~p~il~iDEiD~l~~~~~~~~-~~~~~~~~~~l~~ll~~ld~~~~~~~v~vI~ttn~~~ 272 (364)
T TIGR01242 194 RKYIGEGARLVREIFELAKEKAPSIIFIDEIDAIAAKRTDSG-TSGDREVQRTLMQLLAELDGFDPRGNVKVIAATNRPD 272 (364)
T ss_pred HHhhhHHHHHHHHHHHHHHhcCCcEEEhhhhhhhccccccCC-CCccHHHHHHHHHHHHHhhCCCCCCCEEEEEecCChh
Confidence 999999999999999999999999999999999987765432 2334566778899999999988778899999999999
Q ss_pred CCChhhhCCCCcceEEEecCCCHHHHHHHHHHHHhcCCCCCCCCCCHHHHHHhCCCCCHHHHHHHHHHHHHHHHhcCCCc
Q 007575 483 VLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTTGFTGADLANLVNEAALLAGRLNKVV 562 (597)
Q Consensus 483 ~LD~aLlRpgRFd~~I~v~~Pd~~eR~eILk~~l~~~~~~l~~dvdl~~LA~~t~G~SgaDL~~Lv~eAal~A~r~~~~~ 562 (597)
.+|++++||||||+.++++.|+.++|.+|++.++.. ..+.+++++..++..+.||+|+||.++|++|++.|.++++..
T Consensus 273 ~ld~al~r~grfd~~i~v~~P~~~~r~~Il~~~~~~--~~l~~~~~~~~la~~t~g~sg~dl~~l~~~A~~~a~~~~~~~ 350 (364)
T TIGR01242 273 ILDPALLRPGRFDRIIEVPLPDFEGRLEILKIHTRK--MKLAEDVDLEAIAKMTEGASGADLKAICTEAGMFAIREERDY 350 (364)
T ss_pred hCChhhcCcccCceEEEeCCcCHHHHHHHHHHHHhc--CCCCccCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhCCCc
Confidence 999999999999999999999999999999999865 456677899999999999999999999999999999999999
Q ss_pred ccHHHHHHHHHHH
Q 007575 563 VEKIDFIHAVERS 575 (597)
Q Consensus 563 It~~d~~~Al~~v 575 (597)
|+.+||.+|++++
T Consensus 351 i~~~d~~~a~~~~ 363 (364)
T TIGR01242 351 VTMDDFIKAVEKV 363 (364)
T ss_pred cCHHHHHHHHHHh
Confidence 9999999999986
No 29
>KOG0737 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=8.6e-38 Score=324.80 Aligned_cols=247 Identities=40% Similarity=0.607 Sum_probs=222.5
Q ss_pred cCCCCcccccccCChHHHHHHHHHHHH-hcChhHHhhcC-CCCCCceEEeCCCCChHHHHHHHHHHhcCCCeeeechhhh
Q 007575 324 EQGDTITFADVAGVDEAKEELEEIVEF-LRSPDKYIRLG-ARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEF 401 (597)
Q Consensus 324 ~~~~~vtf~dV~G~de~k~~L~eiv~~-l~~p~~~~~lg-~~~p~gVLL~GPPGTGKT~LArAIA~el~~pfi~is~sef 401 (597)
...-.++|+|+.|+++++++|++.|-. ++.|+.|...+ .++|+||||+||||||||+||+|+|.+++.+|+.++++.+
T Consensus 84 p~~I~v~f~DIggLe~v~~~L~e~VilPlr~pelF~~g~Ll~p~kGiLL~GPpG~GKTmlAKA~Akeaga~fInv~~s~l 163 (386)
T KOG0737|consen 84 PSEIGVSFDDIGGLEEVKDALQELVILPLRRPELFAKGKLLRPPKGILLYGPPGTGKTMLAKAIAKEAGANFINVSVSNL 163 (386)
T ss_pred hhhceeehhhccchHHHHHHHHHHHhhcccchhhhcccccccCCccceecCCCCchHHHHHHHHHHHcCCCcceeecccc
Confidence 344579999999999999999999987 88888885333 5689999999999999999999999999999999999999
Q ss_pred HHHHhhcchHHHHHHHHHHHhcCCeEEEEcCcchhhhhcCCcccccchhHHHHHHHHHHHHhcCCCCCCc--EEEEEecC
Q 007575 402 VELYVGMGASRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSA--VIVLGATN 479 (597)
Q Consensus 402 ~~~~vG~~e~~vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~eqtLnqLL~emdg~~~~~~--VIVIaaTN 479 (597)
.++|.|++++.++.+|..|.+-.||||||||+|.+...|+ ...|+.....-++|....||+.++.+ |+|++|||
T Consensus 164 t~KWfgE~eKlv~AvFslAsKl~P~iIFIDEvds~L~~R~----s~dHEa~a~mK~eFM~~WDGl~s~~~~rVlVlgATN 239 (386)
T KOG0737|consen 164 TSKWFGEAQKLVKAVFSLASKLQPSIIFIDEVDSFLGQRR----STDHEATAMMKNEFMALWDGLSSKDSERVLVLGATN 239 (386)
T ss_pred chhhHHHHHHHHHHHHhhhhhcCcceeehhhHHHHHhhcc----cchHHHHHHHHHHHHHHhccccCCCCceEEEEeCCC
Confidence 9999999999999999999999999999999999998884 35788888888999999999988655 99999999
Q ss_pred CCCCCChhhhCCCCcceEEEecCCCHHHHHHHHHHHHhcCCCCCCCCCCHHHHHHhCCCCCHHHHHHHHHHHHHHHHhc-
Q 007575 480 RSDVLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTTGFTGADLANLVNEAALLAGRL- 558 (597)
Q Consensus 480 rpd~LD~aLlRpgRFd~~I~v~~Pd~~eR~eILk~~l~~~~~~l~~dvdl~~LA~~t~G~SgaDL~~Lv~eAal~A~r~- 558 (597)
||.+||.|++| |+.++++|+.|+..+|.+||+..++.. ++.+++|+..+|+.|.||||.||.++|..|++...+.
T Consensus 240 RP~DlDeAiiR--R~p~rf~V~lP~~~qR~kILkviLk~e--~~e~~vD~~~iA~~t~GySGSDLkelC~~Aa~~~ire~ 315 (386)
T KOG0737|consen 240 RPFDLDEAIIR--RLPRRFHVGLPDAEQRRKILKVILKKE--KLEDDVDLDEIAQMTEGYSGSDLKELCRLAALRPIREL 315 (386)
T ss_pred CCccHHHHHHH--hCcceeeeCCCchhhHHHHHHHHhccc--ccCcccCHHHHHHhcCCCcHHHHHHHHHHHhHhHHHHH
Confidence 99999999999 999999999999999999999999765 6679999999999999999999999999999877653
Q ss_pred ---C------------------------CCcccHHHHHHHHHHHhcc
Q 007575 559 ---N------------------------KVVVEKIDFIHAVERSIAV 578 (597)
Q Consensus 559 ---~------------------------~~~It~~d~~~Al~~v~~g 578 (597)
. ...++++||..|.+++.+.
T Consensus 316 ~~~~~~~~d~d~~~~d~~~~~~~~~~~~~r~l~~eDf~~a~~~v~~~ 362 (386)
T KOG0737|consen 316 LVSETGLLDLDKAIADLKPTQAAASSCLLRPLEQEDFPKAINRVSAS 362 (386)
T ss_pred HHhcccchhhhhhhhhccCCcccccccccCcccHHHHHHHHHhhhhH
Confidence 1 2456778888888877655
No 30
>KOG0651 consensus 26S proteasome regulatory complex, ATPase RPT4 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.8e-38 Score=321.18 Aligned_cols=249 Identities=42% Similarity=0.672 Sum_probs=233.4
Q ss_pred CCCcccccccCChHHHHHHHHHHHH-hcChhHHhhcCCCCCCceEEeCCCCChHHHHHHHHHHhcCCCeeeechhhhHHH
Q 007575 326 GDTITFADVAGVDEAKEELEEIVEF-LRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFVEL 404 (597)
Q Consensus 326 ~~~vtf~dV~G~de~k~~L~eiv~~-l~~p~~~~~lg~~~p~gVLL~GPPGTGKT~LArAIA~el~~pfi~is~sef~~~ 404 (597)
...++|+++.|.-++..+|.+.++. +.+|..|.++|+++|++++||||||||||++|+++|..++++|+.+..+++++.
T Consensus 126 ~~~~s~~~~ggl~~qirelre~ielpl~np~lf~rvgIk~Pkg~ll~GppGtGKTlla~~Vaa~mg~nfl~v~ss~lv~k 205 (388)
T KOG0651|consen 126 PRNISFENVGGLFYQIRELREVIELPLTNPELFLRVGIKPPKGLLLYGPPGTGKTLLARAVAATMGVNFLKVVSSALVDK 205 (388)
T ss_pred ccccCHHHhCChHHHHHHHHhheEeeccCchhccccCCCCCceeEEeCCCCCchhHHHHHHHHhcCCceEEeeHhhhhhh
Confidence 3468999999999999999999987 899999999999999999999999999999999999999999999999999999
Q ss_pred HhhcchHHHHHHHHHHHhcCCeEEEEcCcchhhhhcCCcccccchhHHHHHHHHHHHHhcCCCCCCcEEEEEecCCCCCC
Q 007575 405 YVGMGASRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATNRSDVL 484 (597)
Q Consensus 405 ~vG~~e~~vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~eqtLnqLL~emdg~~~~~~VIVIaaTNrpd~L 484 (597)
|.|++++.+|+.|+.|+...|||||+||||+++..+... ....+.+..+||-.|+.+||+|+....|-+|+|||+|+.|
T Consensus 206 yiGEsaRlIRemf~yA~~~~pciifmdeiDAigGRr~se-~Ts~dreiqrTLMeLlnqmdgfd~l~rVk~ImatNrpdtL 284 (388)
T KOG0651|consen 206 YIGESARLIRDMFRYAREVIPCIIFMDEIDAIGGRRFSE-GTSSDREIQRTLMELLNQMDGFDTLHRVKTIMATNRPDTL 284 (388)
T ss_pred hcccHHHHHHHHHHHHhhhCceEEeehhhhhhccEEecc-ccchhHHHHHHHHHHHHhhccchhcccccEEEecCCcccc
Confidence 999999999999999999999999999999999887433 3556789999999999999999999999999999999999
Q ss_pred ChhhhCCCCcceEEEecCCCHHHHHHHHHHHHhcCCCCCCCCCCHHHHHHhCCCCCHHHHHHHHHHHHHHHHhcCCCccc
Q 007575 485 DPALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTTGFTGADLANLVNEAALLAGRLNKVVVE 564 (597)
Q Consensus 485 D~aLlRpgRFd~~I~v~~Pd~~eR~eILk~~l~~~~~~l~~dvdl~~LA~~t~G~SgaDL~~Lv~eAal~A~r~~~~~It 564 (597)
||+|+||||+|+.+.+++|+...|.+|++.|... +.....++.+.+.+..+||.|+|+++.|.||.+.|.+.....+-
T Consensus 285 dpaLlRpGRldrk~~iPlpne~~r~~I~Kih~~~--i~~~Geid~eaivK~~d~f~gad~rn~~tEag~Fa~~~~~~~vl 362 (388)
T KOG0651|consen 285 DPALLRPGRLDRKVEIPLPNEQARLGILKIHVQP--IDFHGEIDDEAILKLVDGFNGADLRNVCTEAGMFAIPEERDEVL 362 (388)
T ss_pred chhhcCCccccceeccCCcchhhceeeEeecccc--ccccccccHHHHHHHHhccChHHHhhhcccccccccchhhHHHh
Confidence 9999999999999999999999999999999864 45556788999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhc
Q 007575 565 KIDFIHAVERSIA 577 (597)
Q Consensus 565 ~~d~~~Al~~v~~ 577 (597)
++||..++.++--
T Consensus 363 ~Ed~~k~vrk~~~ 375 (388)
T KOG0651|consen 363 HEDFMKLVRKQAD 375 (388)
T ss_pred HHHHHHHHHHHHH
Confidence 9999999888643
No 31
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=100.00 E-value=1.1e-35 Score=327.53 Aligned_cols=254 Identities=36% Similarity=0.587 Sum_probs=214.4
Q ss_pred cccCCCCcccccccCChHHHHHHHHHHHH-hcChhHHhhcCCCCCCceEEeCCCCChHHHHHHHHHHhcCCC--------
Q 007575 322 VSEQGDTITFADVAGVDEAKEELEEIVEF-LRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVP-------- 392 (597)
Q Consensus 322 ~~~~~~~vtf~dV~G~de~k~~L~eiv~~-l~~p~~~~~lg~~~p~gVLL~GPPGTGKT~LArAIA~el~~p-------- 392 (597)
+.++.|.++|+||+|++++++++++.+.. +.+++.|...|.++|+|+|||||||||||++|+++|++++.+
T Consensus 172 ~~~~~p~v~~~dIgGl~~~i~~i~~~v~lp~~~~~l~~~~gl~~p~GILLyGPPGTGKT~LAKAlA~eL~~~i~~~~~~~ 251 (512)
T TIGR03689 172 VLEEVPDVTYADIGGLDSQIEQIRDAVELPFLHPELYREYDLKPPKGVLLYGPPGCGKTLIAKAVANSLAQRIGAETGDK 251 (512)
T ss_pred eeecCCCCCHHHcCChHHHHHHHHHHHHHHhhCHHHHHhccCCCCcceEEECCCCCcHHHHHHHHHHhhccccccccCCc
Confidence 34667899999999999999999999887 889999999999999999999999999999999999998654
Q ss_pred --eeeechhhhHHHHhhcchHHHHHHHHHHHhc----CCeEEEEcCcchhhhhcCCcccccchhHHHHHHHHHHHHhcCC
Q 007575 393 --FISCSASEFVELYVGMGASRVRDLFARAKKE----APSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGF 466 (597)
Q Consensus 393 --fi~is~sef~~~~vG~~e~~vr~lF~~A~~~----aP~ILfIDEIDaL~~~r~~~~~~~~~~e~eqtLnqLL~emdg~ 466 (597)
|+.+.++++..+|+|++++.++.+|+.++.. .||||||||+|.++.+++.+ ..++....++++||.+||++
T Consensus 252 ~~fl~v~~~eLl~kyvGete~~ir~iF~~Ar~~a~~g~p~IIfIDEiD~L~~~R~~~---~s~d~e~~il~~LL~~LDgl 328 (512)
T TIGR03689 252 SYFLNIKGPELLNKYVGETERQIRLIFQRAREKASDGRPVIVFFDEMDSIFRTRGSG---VSSDVETTVVPQLLSELDGV 328 (512)
T ss_pred eeEEeccchhhcccccchHHHHHHHHHHHHHHHhhcCCCceEEEehhhhhhcccCCC---ccchHHHHHHHHHHHHhccc
Confidence 6778888999999999999999999998864 69999999999999887542 23344467789999999999
Q ss_pred CCCCcEEEEEecCCCCCCChhhhCCCCcceEEEecCCCHHHHHHHHHHHHhcCCCCCCCC---------CCHHHHHHh--
Q 007575 467 DSNSAVIVLGATNRSDVLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKD---------IDLGDIASM-- 535 (597)
Q Consensus 467 ~~~~~VIVIaaTNrpd~LD~aLlRpgRFd~~I~v~~Pd~~eR~eILk~~l~~~~~~l~~d---------vdl~~LA~~-- 535 (597)
....+++||+|||+++.||++|+||||||.+|+|++|+.++|.+||+.++.. .+++.++ .++..+++.
T Consensus 329 ~~~~~ViVI~ATN~~d~LDpALlRpGRfD~~I~~~~Pd~e~r~~Il~~~l~~-~l~l~~~l~~~~g~~~a~~~al~~~av 407 (512)
T TIGR03689 329 ESLDNVIVIGASNREDMIDPAILRPGRLDVKIRIERPDAEAAADIFSKYLTD-SLPLDADLAEFDGDREATAAALIQRAV 407 (512)
T ss_pred ccCCceEEEeccCChhhCCHhhcCccccceEEEeCCCCHHHHHHHHHHHhhc-cCCchHHHHHhcCCCHHHHHHHHHHHH
Confidence 9888999999999999999999999999999999999999999999999864 2343111 122233222
Q ss_pred ---------------------------CCCCCHHHHHHHHHHHHHHHHhc----CCCcccHHHHHHHHHHHhccc
Q 007575 536 ---------------------------TTGFTGADLANLVNEAALLAGRL----NKVVVEKIDFIHAVERSIAVS 579 (597)
Q Consensus 536 ---------------------------t~G~SgaDL~~Lv~eAal~A~r~----~~~~It~~d~~~Al~~v~~g~ 579 (597)
++.+||++|.++|.+|...|+.+ +...|+.+|+..|++.-....
T Consensus 408 ~~~~a~~~~~~~l~~~~~~g~~~~l~~~d~~sGa~i~~iv~~a~~~ai~~~~~~~~~~~~~~~l~~a~~~e~~~~ 482 (512)
T TIGR03689 408 DHLYATSEENRYVEVTYANGSTEVLYFKDFVSGAMIANIVDRAKKRAIKDHITGGQVGLRIEHLLAAVLDEFRES 482 (512)
T ss_pred HHHhhhhcccceeEEEecCCceeeEeecccccHHHHHHHHHHHHHHHHHHHHhcCCcCcCHHHHHHHHHHhhccc
Confidence 45688999999999998888765 446788999999988766544
No 32
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=9.2e-34 Score=311.13 Aligned_cols=244 Identities=44% Similarity=0.648 Sum_probs=226.5
Q ss_pred CCcccccccCChHHHHHHHHHHHH-hcChhHHhhcCCCCCCceEEeCCCCChHHHHHHHHHHhcCCCeeeechhhhHHHH
Q 007575 327 DTITFADVAGVDEAKEELEEIVEF-LRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFVELY 405 (597)
Q Consensus 327 ~~vtf~dV~G~de~k~~L~eiv~~-l~~p~~~~~lg~~~p~gVLL~GPPGTGKT~LArAIA~el~~pfi~is~sef~~~~ 405 (597)
+.++ +++.|.......+++++++ +.++..|...|.++|+++|+|||||||||.+++++|++.++.++.+++++++..+
T Consensus 180 ~~~~-~~~gg~~~~~~~i~e~v~~pl~~~~~~~s~g~~~prg~Ll~gppg~Gkt~l~~aVa~e~~a~~~~i~~peli~k~ 258 (693)
T KOG0730|consen 180 PEVG-DDIGGLKRQLSVIRELVELPLRHPALFKSIGIKPPRGLLLYGPPGTGKTFLVRAVANEYGAFLFLINGPELISKF 258 (693)
T ss_pred cccc-cccchhHHHHHHHHHHHHhhhcchhhhhhcCCCCCCCccccCCCCCChHHHHHHHHHHhCceeEecccHHHHHhc
Confidence 5677 8999999999999999998 8999999999999999999999999999999999999999999999999999999
Q ss_pred hhcchHHHHHHHHHHHhcC-CeEEEEcCcchhhhhcCCcccccchhHHHHHHHHHHHHhcCCCCCCcEEEEEecCCCCCC
Q 007575 406 VGMGASRVRDLFARAKKEA-PSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATNRSDVL 484 (597)
Q Consensus 406 vG~~e~~vr~lF~~A~~~a-P~ILfIDEIDaL~~~r~~~~~~~~~~e~eqtLnqLL~emdg~~~~~~VIVIaaTNrpd~L 484 (597)
.|++++.+|..|++|.+.+ |+||||||||++++++... ++...++..||++.||+..+..+++||++||+|+.|
T Consensus 259 ~gEte~~LR~~f~~a~k~~~psii~IdEld~l~p~r~~~-----~~~e~Rv~sqlltL~dg~~~~~~vivl~atnrp~sl 333 (693)
T KOG0730|consen 259 PGETESNLRKAFAEALKFQVPSIIFIDELDALCPKREGA-----DDVESRVVSQLLTLLDGLKPDAKVIVLAATNRPDSL 333 (693)
T ss_pred ccchHHHHHHHHHHHhccCCCeeEeHHhHhhhCCccccc-----chHHHHHHHHHHHHHhhCcCcCcEEEEEecCCcccc
Confidence 9999999999999999999 9999999999999988642 224678889999999999989999999999999999
Q ss_pred ChhhhCCCCcceEEEecCCCHHHHHHHHHHHHhcCCCCCCCCCCHHHHHHhCCCCCHHHHHHHHHHHHHHHHhcCCCccc
Q 007575 485 DPALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTTGFTGADLANLVNEAALLAGRLNKVVVE 564 (597)
Q Consensus 485 D~aLlRpgRFd~~I~v~~Pd~~eR~eILk~~l~~~~~~l~~dvdl~~LA~~t~G~SgaDL~~Lv~eAal~A~r~~~~~It 564 (597)
|++++| ||||+.+.+..|+..+|.+|++.+.++. ++.+++++..+|..|+||+|+||..+|.+|++.+.++ +
T Consensus 334 d~alRR-gRfd~ev~IgiP~~~~RldIl~~l~k~~--~~~~~~~l~~iA~~thGyvGaDL~~l~~ea~~~~~r~-----~ 405 (693)
T KOG0730|consen 334 DPALRR-GRFDREVEIGIPGSDGRLDILRVLTKKM--NLLSDVDLEDIAVSTHGYVGADLAALCREASLQATRR-----T 405 (693)
T ss_pred Chhhhc-CCCcceeeecCCCchhHHHHHHHHHHhc--CCcchhhHHHHHHHccchhHHHHHHHHHHHHHHHhhh-----h
Confidence 999999 9999999999999999999999999764 5557789999999999999999999999999999887 8
Q ss_pred HHHHHHHHHHHhcccccccc
Q 007575 565 KIDFIHAVERSIAVSLSLSL 584 (597)
Q Consensus 565 ~~d~~~Al~~v~~g~~k~s~ 584 (597)
+++|..|...+.+...+...
T Consensus 406 ~~~~~~A~~~i~psa~Re~~ 425 (693)
T KOG0730|consen 406 LEIFQEALMGIRPSALREIL 425 (693)
T ss_pred HHHHHHHHhcCCchhhhhee
Confidence 89999998888877766543
No 33
>KOG0732 consensus AAA+-type ATPase containing the bromodomain [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4.5e-34 Score=328.46 Aligned_cols=256 Identities=40% Similarity=0.616 Sum_probs=230.4
Q ss_pred CCCCcccccccCChHHHHHHHHHHHH-hcChhHHhhcCCCCCCceEEeCCCCChHHHHHHHHHHhc-----CCCeeeech
Q 007575 325 QGDTITFADVAGVDEAKEELEEIVEF-LRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEA-----EVPFISCSA 398 (597)
Q Consensus 325 ~~~~vtf~dV~G~de~k~~L~eiv~~-l~~p~~~~~lg~~~p~gVLL~GPPGTGKT~LArAIA~el-----~~pfi~is~ 398 (597)
....++|++|+|++.++.+|+|+|.+ +..|+.|..++..+|+|||++||||||||+.|+|+|..+ .+.|+.-++
T Consensus 258 ~~~~v~fd~vggl~~~i~~LKEmVl~PLlyPE~f~~~~itpPrgvL~~GppGTGkTl~araLa~~~s~~~~kisffmrkg 337 (1080)
T KOG0732|consen 258 VDSSVGFDSVGGLENYINQLKEMVLLPLLYPEFFDNFNITPPRGVLFHGPPGTGKTLMARALAAACSRGNRKISFFMRKG 337 (1080)
T ss_pred hhcccCccccccHHHHHHHHHHHHHhHhhhhhHhhhcccCCCcceeecCCCCCchhHHHHhhhhhhcccccccchhhhcC
Confidence 34579999999999999999999998 899999999999999999999999999999999999987 478888899
Q ss_pred hhhHHHHhhcchHHHHHHHHHHHhcCCeEEEEcCcchhhhhcCCcccccchhHHHHHHHHHHHHhcCCCCCCcEEEEEec
Q 007575 399 SEFVELYVGMGASRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGAT 478 (597)
Q Consensus 399 sef~~~~vG~~e~~vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~eqtLnqLL~emdg~~~~~~VIVIaaT 478 (597)
.+..++|+|+.+..++.+|++|++..|+|||+||||-|++.|.. ........++..||..|||+.+.+.|+||+||
T Consensus 338 aD~lskwvgEaERqlrllFeeA~k~qPSIIffdeIdGlapvrSs----kqEqih~SIvSTLLaLmdGldsRgqVvvigAT 413 (1080)
T KOG0732|consen 338 ADCLSKWVGEAERQLRLLFEEAQKTQPSIIFFDEIDGLAPVRSS----KQEQIHASIVSTLLALMDGLDSRGQVVVIGAT 413 (1080)
T ss_pred chhhccccCcHHHHHHHHHHHHhccCceEEeccccccccccccc----hHHHhhhhHHHHHHHhccCCCCCCceEEEccc
Confidence 99999999999999999999999999999999999999988854 24556678889999999999999999999999
Q ss_pred CCCCCCChhhhCCCCcceEEEecCCCHHHHHHHHHHHHhcCCCCCCCCCCHHHHHHhCCCCCHHHHHHHHHHHHHHHHhc
Q 007575 479 NRSDVLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTTGFTGADLANLVNEAALLAGRL 558 (597)
Q Consensus 479 Nrpd~LD~aLlRpgRFd~~I~v~~Pd~~eR~eILk~~l~~~~~~l~~dvdl~~LA~~t~G~SgaDL~~Lv~eAal~A~r~ 558 (597)
|||+.+||+|+||||||+.+++++|+.+.|.+|+..|-.+-.-++. ..-+..||..|.||.|+||+.+|.+|++.+.++
T Consensus 414 nRpda~dpaLRRPgrfdref~f~lp~~~ar~~Il~Ihtrkw~~~i~-~~l~~~la~~t~gy~gaDlkaLCTeAal~~~~r 492 (1080)
T KOG0732|consen 414 NRPDAIDPALRRPGRFDREFYFPLPDVDARAKILDIHTRKWEPPIS-RELLLWLAEETSGYGGADLKALCTEAALIALRR 492 (1080)
T ss_pred CCccccchhhcCCcccceeEeeeCCchHHHHHHHHHhccCCCCCCC-HHHHHHHHHhccccchHHHHHHHHHHhhhhhcc
Confidence 9999999999999999999999999999999999999876443332 234789999999999999999999999999887
Q ss_pred C----------------CCcccHHHHHHHHHHHhccccccccc
Q 007575 559 N----------------KVVVEKIDFIHAVERSIAVSLSLSLS 585 (597)
Q Consensus 559 ~----------------~~~It~~d~~~Al~~v~~g~~k~s~~ 585 (597)
. ...|...||-.|+.+..+...+++.+
T Consensus 493 ~~Pq~y~s~~kl~~d~~~ikV~~~~f~~A~~~i~ps~~R~~~~ 535 (1080)
T KOG0732|consen 493 SFPQIYSSSDKLLIDVALIKVEVRDFVEAMSRITPSSRRSSVI 535 (1080)
T ss_pred ccCeeecccccccccchhhhhhhHhhhhhhhccCCCCCccccC
Confidence 2 23478889999999998888776543
No 34
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.7e-34 Score=306.24 Aligned_cols=252 Identities=34% Similarity=0.563 Sum_probs=213.6
Q ss_pred CCCccccc--ccCChHHHHHHHH--HHHHhcChhHHhhcCCCCCCceEEeCCCCChHHHHHHHHHHhcCC-Ceeeechhh
Q 007575 326 GDTITFAD--VAGVDEAKEELEE--IVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEV-PFISCSASE 400 (597)
Q Consensus 326 ~~~vtf~d--V~G~de~k~~L~e--iv~~l~~p~~~~~lg~~~p~gVLL~GPPGTGKT~LArAIA~el~~-pfi~is~se 400 (597)
.|.-.|++ |.|++..-..+-. +...+-.|+...++|.+--+|+|||||||||||++||.|..-++. +=-.+++++
T Consensus 213 ~Pdf~Fe~mGIGGLd~EFs~IFRRAFAsRvFpp~vie~lGi~HVKGiLLyGPPGTGKTLiARqIGkMLNArePKIVNGPe 292 (744)
T KOG0741|consen 213 NPDFNFESMGIGGLDKEFSDIFRRAFASRVFPPEVIEQLGIKHVKGILLYGPPGTGKTLIARQIGKMLNAREPKIVNGPE 292 (744)
T ss_pred CCCCChhhcccccchHHHHHHHHHHHHhhcCCHHHHHHcCccceeeEEEECCCCCChhHHHHHHHHHhcCCCCcccCcHH
Confidence 45666766 5677755443322 233366788888999999999999999999999999999998863 445679999
Q ss_pred hHHHHhhcchHHHHHHHHHHHhc--------CCeEEEEcCcchhhhhcCCcccccchhHHHHHHHHHHHHhcCCCCCCcE
Q 007575 401 FVELYVGMGASRVRDLFARAKKE--------APSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAV 472 (597)
Q Consensus 401 f~~~~vG~~e~~vr~lF~~A~~~--------aP~ILfIDEIDaL~~~r~~~~~~~~~~e~eqtLnqLL~emdg~~~~~~V 472 (597)
+..+|+|++++++|++|..|... .--||++||||+++++|+.. .++....++++||||..|||.+.-.+|
T Consensus 293 IL~KYVGeSE~NvR~LFaDAEeE~r~~g~~SgLHIIIFDEiDAICKqRGS~--~g~TGVhD~VVNQLLsKmDGVeqLNNI 370 (744)
T KOG0741|consen 293 ILNKYVGESEENVRKLFADAEEEQRRLGANSGLHIIIFDEIDAICKQRGSM--AGSTGVHDTVVNQLLSKMDGVEQLNNI 370 (744)
T ss_pred HHHHhhcccHHHHHHHHHhHHHHHHhhCccCCceEEEehhhHHHHHhcCCC--CCCCCccHHHHHHHHHhcccHHhhhcE
Confidence 99999999999999999998642 12399999999999999863 344566789999999999999999999
Q ss_pred EEEEecCCCCCCChhhhCCCCcceEEEecCCCHHHHHHHHHHHHhc--CCCCCCCCCCHHHHHHhCCCCCHHHHHHHHHH
Q 007575 473 IVLGATNRSDVLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSK--KELPLAKDIDLGDIASMTTGFTGADLANLVNE 550 (597)
Q Consensus 473 IVIaaTNrpd~LD~aLlRpgRFd~~I~v~~Pd~~eR~eILk~~l~~--~~~~l~~dvdl~~LA~~t~G~SgaDL~~Lv~e 550 (597)
+||+.|||.|.+|+||+|||||..++++.+||.++|.+|++.|.++ .+-.+..++|+++||.+|..|||++|+.+|..
T Consensus 371 LVIGMTNR~DlIDEALLRPGRlEVqmEIsLPDE~gRlQIl~IHT~rMre~~~l~~dVdl~elA~lTKNfSGAEleglVks 450 (744)
T KOG0741|consen 371 LVIGMTNRKDLIDEALLRPGRLEVQMEISLPDEKGRLQILKIHTKRMRENNKLSADVDLKELAALTKNFSGAELEGLVKS 450 (744)
T ss_pred EEEeccCchhhHHHHhcCCCceEEEEEEeCCCccCceEEEEhhhhhhhhcCCCCCCcCHHHHHHHhcCCchhHHHHHHHH
Confidence 9999999999999999999999999999999999999999999875 24467899999999999999999999999999
Q ss_pred HHHHHHhcC---------------CCcccHHHHHHHHHHHhccc
Q 007575 551 AALLAGRLN---------------KVVVEKIDFIHAVERSIAVS 579 (597)
Q Consensus 551 Aal~A~r~~---------------~~~It~~d~~~Al~~v~~g~ 579 (597)
|...|..+. +-.|+++||..|++.+.+.-
T Consensus 451 A~S~A~nR~vk~~~~~~~~~~~~e~lkV~r~DFl~aL~dVkPAF 494 (744)
T KOG0741|consen 451 AQSFAMNRHVKAGGKVEVDPVAIENLKVTRGDFLNALEDVKPAF 494 (744)
T ss_pred HHHHHHHhhhccCcceecCchhhhheeecHHHHHHHHHhcCccc
Confidence 998887651 24589999999999886643
No 35
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=100.00 E-value=1.3e-32 Score=318.13 Aligned_cols=249 Identities=49% Similarity=0.794 Sum_probs=224.8
Q ss_pred CCCcccccccCChHHHHHHHHHHHH-hcChhHHhhcCCCCCCceEEeCCCCChHHHHHHHHHHhcCCCeeeechhhhHHH
Q 007575 326 GDTITFADVAGVDEAKEELEEIVEF-LRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFVEL 404 (597)
Q Consensus 326 ~~~vtf~dV~G~de~k~~L~eiv~~-l~~p~~~~~lg~~~p~gVLL~GPPGTGKT~LArAIA~el~~pfi~is~sef~~~ 404 (597)
.+.++|+||+|.+++++.+.+++.. +++|+.|..+|..+|+++|||||||||||++|+++|++++.+|+.++++++...
T Consensus 172 ~~~~~~~di~G~~~~~~~l~~~i~~~~~~~~~~~~~gi~~~~giLL~GppGtGKT~laraia~~~~~~~i~i~~~~i~~~ 251 (733)
T TIGR01243 172 VPKVTYEDIGGLKEAKEKIREMVELPMKHPELFEHLGIEPPKGVLLYGPPGTGKTLLAKAVANEAGAYFISINGPEIMSK 251 (733)
T ss_pred CCCCCHHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCceEEEECCCCCChHHHHHHHHHHhCCeEEEEecHHHhcc
Confidence 4679999999999999999999987 889999999999999999999999999999999999999999999999999999
Q ss_pred HhhcchHHHHHHHHHHHhcCCeEEEEcCcchhhhhcCCcccccchhHHHHHHHHHHHHhcCCCCCCcEEEEEecCCCCCC
Q 007575 405 YVGMGASRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATNRSDVL 484 (597)
Q Consensus 405 ~vG~~e~~vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~eqtLnqLL~emdg~~~~~~VIVIaaTNrpd~L 484 (597)
+.|.++..++.+|+.|....|+||||||||.+..+++.. ..+...+++++|+..|+++.....++||++||+++.+
T Consensus 252 ~~g~~~~~l~~lf~~a~~~~p~il~iDEid~l~~~r~~~----~~~~~~~~~~~Ll~~ld~l~~~~~vivI~atn~~~~l 327 (733)
T TIGR01243 252 YYGESEERLREIFKEAEENAPSIIFIDEIDAIAPKREEV----TGEVEKRVVAQLLTLMDGLKGRGRVIVIGATNRPDAL 327 (733)
T ss_pred cccHHHHHHHHHHHHHHhcCCcEEEeehhhhhcccccCC----cchHHHHHHHHHHHHhhccccCCCEEEEeecCChhhc
Confidence 999999999999999999999999999999999876532 2233356889999999999888899999999999999
Q ss_pred ChhhhCCCCcceEEEecCCCHHHHHHHHHHHHhcCCCCCCCCCCHHHHHHhCCCCCHHHHHHHHHHHHHHHHhcC-----
Q 007575 485 DPALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTTGFTGADLANLVNEAALLAGRLN----- 559 (597)
Q Consensus 485 D~aLlRpgRFd~~I~v~~Pd~~eR~eILk~~l~~~~~~l~~dvdl~~LA~~t~G~SgaDL~~Lv~eAal~A~r~~----- 559 (597)
|++++|+|||++.+.++.|+.++|.+||+.+... .++.++++++.++..++||+++|+..++++|+..+.++.
T Consensus 328 d~al~r~gRfd~~i~i~~P~~~~R~~Il~~~~~~--~~l~~d~~l~~la~~t~G~~gadl~~l~~~a~~~al~r~~~~~~ 405 (733)
T TIGR01243 328 DPALRRPGRFDREIVIRVPDKRARKEILKVHTRN--MPLAEDVDLDKLAEVTHGFVGADLAALAKEAAMAALRRFIREGK 405 (733)
T ss_pred CHHHhCchhccEEEEeCCcCHHHHHHHHHHHhcC--CCCccccCHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHhhccc
Confidence 9999999999999999999999999999988754 567778899999999999999999999999999887641
Q ss_pred --------------CCcccHHHHHHHHHHHhcccc
Q 007575 560 --------------KVVVEKIDFIHAVERSIAVSL 580 (597)
Q Consensus 560 --------------~~~It~~d~~~Al~~v~~g~~ 580 (597)
...++.+||..|+..+.+...
T Consensus 406 ~~~~~~~i~~~~~~~~~v~~~df~~Al~~v~ps~~ 440 (733)
T TIGR01243 406 INFEAEEIPAEVLKELKVTMKDFMEALKMVEPSAI 440 (733)
T ss_pred cccccccccchhcccccccHHHHHHHHhhcccccc
Confidence 124788999999988876553
No 36
>KOG0740 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.98 E-value=6.6e-32 Score=289.08 Aligned_cols=248 Identities=36% Similarity=0.553 Sum_probs=215.9
Q ss_pred cCCCCcccccccCChHHHHHHHHHHHH-hcChhHHhhcCCCCCCceEEeCCCCChHHHHHHHHHHhcCCCeeeechhhhH
Q 007575 324 EQGDTITFADVAGVDEAKEELEEIVEF-LRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFV 402 (597)
Q Consensus 324 ~~~~~vtf~dV~G~de~k~~L~eiv~~-l~~p~~~~~lg~~~p~gVLL~GPPGTGKT~LArAIA~el~~pfi~is~sef~ 402 (597)
...+.+.|+|++|++.+|+.+.+++-+ +..+..|..+ ..+++++||.||||||||+|++|||.|+++.|+.++++.+.
T Consensus 145 ~~~~~v~~~di~gl~~~k~~l~e~vi~p~lr~d~F~gl-r~p~rglLLfGPpgtGKtmL~~aiAsE~~atff~iSassLt 223 (428)
T KOG0740|consen 145 DTLRNVGWDDIAGLEDAKQSLKEAVILPLLRPDLFLGL-REPVRGLLLFGPPGTGKTMLAKAIATESGATFFNISASSLT 223 (428)
T ss_pred ccCCcccccCCcchhhHHHHhhhhhhhcccchHhhhcc-ccccchhheecCCCCchHHHHHHHHhhhcceEeeccHHHhh
Confidence 445679999999999999999999998 5668877654 35678999999999999999999999999999999999999
Q ss_pred HHHhhcchHHHHHHHHHHHhcCCeEEEEcCcchhhhhcCCcccccchhHHHHHHHHHHHHhcCCCC--CCcEEEEEecCC
Q 007575 403 ELYVGMGASRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDS--NSAVIVLGATNR 480 (597)
Q Consensus 403 ~~~vG~~e~~vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~eqtLnqLL~emdg~~~--~~~VIVIaaTNr 480 (597)
++|+|++++.++.+|.-|+...|+|+||||||.+..+|.+ ..++...+...++|..+++... ...|+||+|||+
T Consensus 224 sK~~Ge~eK~vralf~vAr~~qPsvifidEidslls~Rs~----~e~e~srr~ktefLiq~~~~~s~~~drvlvigaTN~ 299 (428)
T KOG0740|consen 224 SKYVGESEKLVRALFKVARSLQPSVIFIDEIDSLLSKRSD----NEHESSRRLKTEFLLQFDGKNSAPDDRVLVIGATNR 299 (428)
T ss_pred hhccChHHHHHHHHHHHHHhcCCeEEEechhHHHHhhcCC----cccccchhhhhHHHhhhccccCCCCCeEEEEecCCC
Confidence 9999999999999999999999999999999999999854 4566677888888888887654 468999999999
Q ss_pred CCCCChhhhCCCCcceEEEecCCCHHHHHHHHHHHHhcCCCCCCCCCCHHHHHHhCCCCCHHHHHHHHHHHHHHHHhc--
Q 007575 481 SDVLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTTGFTGADLANLVNEAALLAGRL-- 558 (597)
Q Consensus 481 pd~LD~aLlRpgRFd~~I~v~~Pd~~eR~eILk~~l~~~~~~l~~dvdl~~LA~~t~G~SgaDL~~Lv~eAal~A~r~-- 558 (597)
|+.+|.+++| ||.+.+++++||.+.|..+++.++.+.+..+ .+.+++.|++.|+||++.||.++|.+|++.-.+.
T Consensus 300 P~e~Dea~~R--rf~kr~yiplPd~etr~~~~~~ll~~~~~~l-~~~d~~~l~~~Tegysgsdi~~l~kea~~~p~r~~~ 376 (428)
T KOG0740|consen 300 PWELDEAARR--RFVKRLYIPLPDYETRSLLWKQLLKEQPNGL-SDLDISLLAKVTEGYSGSDITALCKEAAMGPLRELG 376 (428)
T ss_pred chHHHHHHHH--HhhceeeecCCCHHHHHHHHHHHHHhCCCCc-cHHHHHHHHHHhcCcccccHHHHHHHhhcCchhhcc
Confidence 9999999999 9999999999999999999999998764444 3458999999999999999999999998744332
Q ss_pred -----------CCCcccHHHHHHHHHHHhccc
Q 007575 559 -----------NKVVVEKIDFIHAVERSIAVS 579 (597)
Q Consensus 559 -----------~~~~It~~d~~~Al~~v~~g~ 579 (597)
+...|+..||+.|++.+.+..
T Consensus 377 ~~~~~~~~~~~~~r~i~~~df~~a~~~i~~~~ 408 (428)
T KOG0740|consen 377 GTTDLEFIDADKIRPITYPDFKNAFKNIKPSV 408 (428)
T ss_pred cchhhhhcchhccCCCCcchHHHHHHhhcccc
Confidence 223466788999988876553
No 37
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=99.98 E-value=1.9e-31 Score=280.08 Aligned_cols=215 Identities=19% Similarity=0.238 Sum_probs=169.3
Q ss_pred Ccccccc-cCChHHHHHHHHHHHHhcChhHHh-hcCCCCCCceEEeCCCCChHHHHHHHHHHhcCCCeeeechhhhHHHH
Q 007575 328 TITFADV-AGVDEAKEELEEIVEFLRSPDKYI-RLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFVELY 405 (597)
Q Consensus 328 ~vtf~dV-~G~de~k~~L~eiv~~l~~p~~~~-~lg~~~p~gVLL~GPPGTGKT~LArAIA~el~~pfi~is~sef~~~~ 405 (597)
..+|+++ .|+--.+.-+..++..+. ..|. ..|.++|++++||||||||||++|+++|++++++|+.++++++.+.|
T Consensus 111 ~~~f~~~~g~~~~~p~f~dk~~~hi~--kn~l~~~~ik~PlgllL~GPPGcGKTllAraiA~elg~~~i~vsa~eL~sk~ 188 (413)
T PLN00020 111 TRSFDNLVGGYYIAPAFMDKVAVHIA--KNFLALPNIKVPLILGIWGGKGQGKSFQCELVFKKMGIEPIVMSAGELESEN 188 (413)
T ss_pred hcchhhhcCccccCHHHHHHHHHHHH--hhhhhccCCCCCeEEEeeCCCCCCHHHHHHHHHHHcCCCeEEEEHHHhhcCc
Confidence 4566676 555555555555443321 1122 25789999999999999999999999999999999999999999999
Q ss_pred hhcchHHHHHHHHHHHh-----cCCeEEEEcCcchhhhhcCCcccccchhHHHHHH-HHHHHHhcCC------------C
Q 007575 406 VGMGASRVRDLFARAKK-----EAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTL-NQLLTEMDGF------------D 467 (597)
Q Consensus 406 vG~~e~~vr~lF~~A~~-----~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~eqtL-nqLL~emdg~------------~ 467 (597)
+|++++.+|++|+.|.. .+||||||||||++++.++.. ......+.+ .+|+++||+. .
T Consensus 189 vGEsEk~IR~~F~~A~~~a~~~~aPcVLFIDEIDA~~g~r~~~----~~tv~~qiV~~tLLnl~D~p~~v~l~G~w~~~~ 264 (413)
T PLN00020 189 AGEPGKLIRQRYREAADIIKKKGKMSCLFINDLDAGAGRFGTT----QYTVNNQMVNGTLMNIADNPTNVSLGGDWREKE 264 (413)
T ss_pred CCcHHHHHHHHHHHHHHHhhccCCCeEEEEehhhhcCCCCCCC----CcchHHHHHHHHHHHHhcCCccccccccccccc
Confidence 99999999999999975 469999999999999887532 233334554 7899998863 3
Q ss_pred CCCcEEEEEecCCCCCCChhhhCCCCcceEEEecCCCHHHHHHHHHHHHhcCCCCCCCCCCHHHHHHhCCC----CCHHH
Q 007575 468 SNSAVIVLGATNRSDVLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTTG----FTGAD 543 (597)
Q Consensus 468 ~~~~VIVIaaTNrpd~LD~aLlRpgRFd~~I~v~~Pd~~eR~eILk~~l~~~~~~l~~dvdl~~LA~~t~G----~SgaD 543 (597)
...+|+||+|||+|+.||++|+||||||+.+ ..|+.++|.+|++.++++.+ +. ..++..|+..++| |.|+-
T Consensus 265 ~~~~V~VIaTTNrpd~LDpALlRpGRfDk~i--~lPd~e~R~eIL~~~~r~~~--l~-~~dv~~Lv~~f~gq~~Df~GAl 339 (413)
T PLN00020 265 EIPRVPIIVTGNDFSTLYAPLIRDGRMEKFY--WAPTREDRIGVVHGIFRDDG--VS-REDVVKLVDTFPGQPLDFFGAL 339 (413)
T ss_pred cCCCceEEEeCCCcccCCHhHcCCCCCCcee--CCCCHHHHHHHHHHHhccCC--CC-HHHHHHHHHcCCCCCchhhhHH
Confidence 4567999999999999999999999999864 58999999999999998754 33 4678899998877 55654
Q ss_pred HHHHHHHHHH
Q 007575 544 LANLVNEAAL 553 (597)
Q Consensus 544 L~~Lv~eAal 553 (597)
-..+..++..
T Consensus 340 rar~yd~~v~ 349 (413)
T PLN00020 340 RARVYDDEVR 349 (413)
T ss_pred HHHHHHHHHH
Confidence 4444444433
No 38
>CHL00181 cbbX CbbX; Provisional
Probab=99.90 E-value=1.6e-22 Score=209.98 Aligned_cols=223 Identities=20% Similarity=0.300 Sum_probs=170.3
Q ss_pred ccccCChHHHHHHHHHHHHhcChhHHhhcCCCCC---CceEEeCCCCChHHHHHHHHHHhc-------CCCeeeechhhh
Q 007575 332 ADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPP---RGVLLVGLPGTGKTLLAKAVAGEA-------EVPFISCSASEF 401 (597)
Q Consensus 332 ~dV~G~de~k~~L~eiv~~l~~p~~~~~lg~~~p---~gVLL~GPPGTGKT~LArAIA~el-------~~pfi~is~sef 401 (597)
++++|++++|+++.+++.++..+..+...|..++ .++||+||||||||++|+++|..+ ..+|+.++++++
T Consensus 23 ~~l~Gl~~vK~~i~e~~~~~~~~~~~~~~g~~~~~~~~~ill~G~pGtGKT~lAr~la~~~~~~g~~~~~~~~~v~~~~l 102 (287)
T CHL00181 23 EELVGLAPVKTRIREIAALLLIDRLRKNLGLTSSNPGLHMSFTGSPGTGKTTVALKMADILYKLGYIKKGHLLTVTRDDL 102 (287)
T ss_pred HhcCCcHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHHHHHHcCCCCCCceEEecHHHH
Confidence 4799999999999999988776666677776554 358999999999999999999875 247999999999
Q ss_pred HHHHhhcchHHHHHHHHHHHhcCCeEEEEcCcchhhhhcCCcccccchhHHHHHHHHHHHHhcCCCCCCcEEEEEecCCC
Q 007575 402 VELYVGMGASRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATNRS 481 (597)
Q Consensus 402 ~~~~vG~~e~~vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~eqtLnqLL~emdg~~~~~~VIVIaaTNrp 481 (597)
+..++|.++..++.+|+.|.. +||||||+|.+...++ .++.....++.|+..|+... ..++||++++..
T Consensus 103 ~~~~~g~~~~~~~~~l~~a~g---gVLfIDE~~~l~~~~~------~~~~~~e~~~~L~~~me~~~--~~~~vI~ag~~~ 171 (287)
T CHL00181 103 VGQYIGHTAPKTKEVLKKAMG---GVLFIDEAYYLYKPDN------ERDYGSEAIEILLQVMENQR--DDLVVIFAGYKD 171 (287)
T ss_pred HHHHhccchHHHHHHHHHccC---CEEEEEccchhccCCC------ccchHHHHHHHHHHHHhcCC--CCEEEEEeCCcH
Confidence 999999988888888888743 5999999999975432 12233567788888887533 457888887643
Q ss_pred C-----CCChhhhCCCCcceEEEecCCCHHHHHHHHHHHHhcCCCCCCCCCCHHHHHHh------CCCCC-HHHHHHHHH
Q 007575 482 D-----VLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASM------TTGFT-GADLANLVN 549 (597)
Q Consensus 482 d-----~LD~aLlRpgRFd~~I~v~~Pd~~eR~eILk~~l~~~~~~l~~dvdl~~LA~~------t~G~S-gaDL~~Lv~ 549 (597)
. .++|+|.+ ||+.+|.|++|+.+++.+|++.++.+.+..+.++. ...+... .+.|. +++++++++
T Consensus 172 ~~~~~~~~np~L~s--R~~~~i~F~~~t~~el~~I~~~~l~~~~~~l~~~~-~~~L~~~i~~~~~~~~~GNaR~vrn~ve 248 (287)
T CHL00181 172 RMDKFYESNPGLSS--RIANHVDFPDYTPEELLQIAKIMLEEQQYQLTPEA-EKALLDYIKKRMEQPLFANARSVRNALD 248 (287)
T ss_pred HHHHHHhcCHHHHH--hCCceEEcCCcCHHHHHHHHHHHHHHhcCCCChhH-HHHHHHHHHHhCCCCCCccHHHHHHHHH
Confidence 2 34799999 99999999999999999999999988777776653 3333332 13333 799999999
Q ss_pred HHHHHHHhc----CCCcccHHHH
Q 007575 550 EAALLAGRL----NKVVVEKIDF 568 (597)
Q Consensus 550 eAal~A~r~----~~~~It~~d~ 568 (597)
+|...-..+ +...++.+|+
T Consensus 249 ~~~~~~~~r~~~~~~~~~~~~~l 271 (287)
T CHL00181 249 RARMRQANRIFESGGRVLTKADL 271 (287)
T ss_pred HHHHHHHHHHHcCCCCCCCHHHH
Confidence 887654433 3334444443
No 39
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=99.89 E-value=2.8e-22 Score=207.93 Aligned_cols=211 Identities=20% Similarity=0.304 Sum_probs=167.3
Q ss_pred cccCChHHHHHHHHHHHHhcChhHHhhcCCCC---CCceEEeCCCCChHHHHHHHHHHhcC-------CCeeeechhhhH
Q 007575 333 DVAGVDEAKEELEEIVEFLRSPDKYIRLGARP---PRGVLLVGLPGTGKTLLAKAVAGEAE-------VPFISCSASEFV 402 (597)
Q Consensus 333 dV~G~de~k~~L~eiv~~l~~p~~~~~lg~~~---p~gVLL~GPPGTGKT~LArAIA~el~-------~pfi~is~sef~ 402 (597)
+++|++++|+++.+++.++..+..+.+.|... ..++||+||||||||++|+++|..+. .+|+.+++++++
T Consensus 23 ~l~Gl~~vk~~i~e~~~~~~~~~~r~~~g~~~~~~~~~vll~G~pGTGKT~lA~~ia~~l~~~g~~~~~~~v~v~~~~l~ 102 (284)
T TIGR02880 23 ELIGLKPVKTRIREIAALLLVERLRQRLGLASAAPTLHMSFTGNPGTGKTTVALRMAQILHRLGYVRKGHLVSVTRDDLV 102 (284)
T ss_pred hccCHHHHHHHHHHHHHHHHHHHHHHHhCCCcCCCCceEEEEcCCCCCHHHHHHHHHHHHHHcCCcccceEEEecHHHHh
Confidence 69999999999999999988888888888764 34899999999999999999988762 379999999999
Q ss_pred HHHhhcchHHHHHHHHHHHhcCCeEEEEcCcchhhhhcCCcccccchhHHHHHHHHHHHHhcCCCCCCcEEEEEecCCC-
Q 007575 403 ELYVGMGASRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATNRS- 481 (597)
Q Consensus 403 ~~~vG~~e~~vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~eqtLnqLL~emdg~~~~~~VIVIaaTNrp- 481 (597)
..+.|.++..++++|++|.. +||||||+|.+...++. .+.....++.|+..|+.. ..+++||++++..
T Consensus 103 ~~~~g~~~~~~~~~~~~a~~---gvL~iDEi~~L~~~~~~------~~~~~~~~~~Ll~~le~~--~~~~~vI~a~~~~~ 171 (284)
T TIGR02880 103 GQYIGHTAPKTKEILKRAMG---GVLFIDEAYYLYRPDNE------RDYGQEAIEILLQVMENQ--RDDLVVILAGYKDR 171 (284)
T ss_pred HhhcccchHHHHHHHHHccC---cEEEEechhhhccCCCc------cchHHHHHHHHHHHHhcC--CCCEEEEEeCCcHH
Confidence 99999998889999988744 59999999998643321 123345678888888743 3567888887643
Q ss_pred -C---CCChhhhCCCCcceEEEecCCCHHHHHHHHHHHHhcCCCCCCCCCCHHHHHHh-------CCCCCHHHHHHHHHH
Q 007575 482 -D---VLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASM-------TTGFTGADLANLVNE 550 (597)
Q Consensus 482 -d---~LD~aLlRpgRFd~~I~v~~Pd~~eR~eILk~~l~~~~~~l~~dvdl~~LA~~-------t~G~SgaDL~~Lv~e 550 (597)
+ .++|+|.+ ||+..|.|++++.+++.+|++.++.+.+..+.++. ++.++.+ .+.-++++++|++..
T Consensus 172 ~~~~~~~np~L~s--R~~~~i~fp~l~~edl~~I~~~~l~~~~~~l~~~a-~~~L~~~l~~~~~~~~~GN~R~lrn~ve~ 248 (284)
T TIGR02880 172 MDSFFESNPGFSS--RVAHHVDFPDYSEAELLVIAGLMLKEQQYRFSAEA-EEAFADYIALRRTQPHFANARSIRNAIDR 248 (284)
T ss_pred HHHHHhhCHHHHh--hCCcEEEeCCcCHHHHHHHHHHHHHHhccccCHHH-HHHHHHHHHHhCCCCCCChHHHHHHHHHH
Confidence 2 35899999 99999999999999999999999988665555542 4455444 233467999999999
Q ss_pred HHHHHHh
Q 007575 551 AALLAGR 557 (597)
Q Consensus 551 Aal~A~r 557 (597)
|......
T Consensus 249 ~~~~~~~ 255 (284)
T TIGR02880 249 ARLRQAN 255 (284)
T ss_pred HHHHHHH
Confidence 8776544
No 40
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=99.89 E-value=5.3e-22 Score=203.05 Aligned_cols=214 Identities=21% Similarity=0.314 Sum_probs=163.8
Q ss_pred ccccccCChHHHHHHHHHHHHhcChhHHhhcCCCC---CCceEEeCCCCChHHHHHHHHHHhc-------CCCeeeechh
Q 007575 330 TFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARP---PRGVLLVGLPGTGKTLLAKAVAGEA-------EVPFISCSAS 399 (597)
Q Consensus 330 tf~dV~G~de~k~~L~eiv~~l~~p~~~~~lg~~~---p~gVLL~GPPGTGKT~LArAIA~el-------~~pfi~is~s 399 (597)
.+++++|++++|+.+++++.+..........|... +.++||+||||||||++|+++|+++ ..+++.++++
T Consensus 4 ~l~~~~Gl~~vk~~i~~~~~~~~~~~~~~~~g~~~~~~~~~vll~GppGtGKTtlA~~ia~~l~~~~~~~~~~~v~~~~~ 83 (261)
T TIGR02881 4 ELSRMVGLDEVKALIKEIYAWIQINEKRKEEGLKTSKQVLHMIFKGNPGTGKTTVARILGKLFKEMNVLSKGHLIEVERA 83 (261)
T ss_pred HHHHhcChHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCcceEEEEcCCCCCHHHHHHHHHHHHHhcCcccCCceEEecHH
Confidence 36789999999999999999876655555566653 3578999999999999999999864 2478999999
Q ss_pred hhHHHHhhcchHHHHHHHHHHHhcCCeEEEEcCcchhhhhcCCcccccchhHHHHHHHHHHHHhcCCCCCCcEEEEEecC
Q 007575 400 EFVELYVGMGASRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATN 479 (597)
Q Consensus 400 ef~~~~vG~~e~~vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~eqtLnqLL~emdg~~~~~~VIVIaaTN 479 (597)
++...++|..+..++++|+.+. ++||||||+|.|.... ..+.....++.|+..|+... ..+++|+++.
T Consensus 84 ~l~~~~~g~~~~~~~~~~~~a~---~~VL~IDE~~~L~~~~-------~~~~~~~~i~~Ll~~~e~~~--~~~~vila~~ 151 (261)
T TIGR02881 84 DLVGEYIGHTAQKTREVIKKAL---GGVLFIDEAYSLARGG-------EKDFGKEAIDTLVKGMEDNR--NEFVLILAGY 151 (261)
T ss_pred HhhhhhccchHHHHHHHHHhcc---CCEEEEechhhhccCC-------ccchHHHHHHHHHHHHhccC--CCEEEEecCC
Confidence 9999999999999999998875 4599999999996321 12223456788999998643 4456665554
Q ss_pred CCC-----CCChhhhCCCCcceEEEecCCCHHHHHHHHHHHHhcCCCCCCCCCCHHHHHHh-------C--CCCCHHHHH
Q 007575 480 RSD-----VLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASM-------T--TGFTGADLA 545 (597)
Q Consensus 480 rpd-----~LD~aLlRpgRFd~~I~v~~Pd~~eR~eILk~~l~~~~~~l~~dvdl~~LA~~-------t--~G~SgaDL~ 545 (597)
..+ .++|+|.+ ||+..+.++.++.+++.+|++.++...+..+.++. +..|+.. . ..-+++.+.
T Consensus 152 ~~~~~~~~~~~p~L~s--Rf~~~i~f~~~~~~el~~Il~~~~~~~~~~l~~~a-~~~l~~~~~~~~~~~~~~~gn~R~~~ 228 (261)
T TIGR02881 152 SDEMDYFLSLNPGLRS--RFPISIDFPDYTVEELMEIAERMVKEREYKLTEEA-KWKLREHLYKVDQLSSREFSNARYVR 228 (261)
T ss_pred cchhHHHHhcChHHHh--ccceEEEECCCCHHHHHHHHHHHHHHcCCccCHHH-HHHHHHHHHHHHhccCCCCchHHHHH
Confidence 322 36889998 99999999999999999999999987766666553 4454322 1 124678899
Q ss_pred HHHHHHHHHHHhc
Q 007575 546 NLVNEAALLAGRL 558 (597)
Q Consensus 546 ~Lv~eAal~A~r~ 558 (597)
|++..|......+
T Consensus 229 n~~e~a~~~~~~r 241 (261)
T TIGR02881 229 NIIEKAIRRQAVR 241 (261)
T ss_pred HHHHHHHHHHHHH
Confidence 9999887655433
No 41
>KOG0742 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.88 E-value=1.1e-21 Score=205.84 Aligned_cols=244 Identities=25% Similarity=0.344 Sum_probs=189.7
Q ss_pred CCcccccccCChHHHHHHHHHHHHhcChhHHhhcCCCCCCceEEeCCCCChHHHHHHHHHHhcCCCeeeechhhhHHHHh
Q 007575 327 DTITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFVELYV 406 (597)
Q Consensus 327 ~~vtf~dV~G~de~k~~L~eiv~~l~~p~~~~~lg~~~p~gVLL~GPPGTGKT~LArAIA~el~~pfi~is~sef~~~~v 406 (597)
.+-.|++|+-....+..++.+...-.+... .-.+=++||+|||||||||++|+-+|...|..+-.+.+.++.- .-
T Consensus 350 gk~pl~~ViL~psLe~Rie~lA~aTaNTK~----h~apfRNilfyGPPGTGKTm~ArelAr~SGlDYA~mTGGDVAP-lG 424 (630)
T KOG0742|consen 350 GKDPLEGVILHPSLEKRIEDLAIATANTKK----HQAPFRNILFYGPPGTGKTMFARELARHSGLDYAIMTGGDVAP-LG 424 (630)
T ss_pred CCCCcCCeecCHHHHHHHHHHHHHhccccc----ccchhhheeeeCCCCCCchHHHHHHHhhcCCceehhcCCCccc-cc
Confidence 445689999999999999888765444322 2334568999999999999999999999999999999887632 22
Q ss_pred hcchHHHHHHHHHHHhcCC-eEEEEcCcchhhhhcCCcccccchhHHHHHHHHHHHHhcCCCCCCcEEEEEecCCCCCCC
Q 007575 407 GMGASRVRDLFARAKKEAP-SIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATNRSDVLD 485 (597)
Q Consensus 407 G~~e~~vr~lF~~A~~~aP-~ILfIDEIDaL~~~r~~~~~~~~~~e~eqtLnqLL~emdg~~~~~~VIVIaaTNrpd~LD 485 (597)
.++...+..+|+.+++... -+|||||.|++...|.. ...++..+..||.||-.-- +....++++.+||+|.+||
T Consensus 425 ~qaVTkiH~lFDWakkS~rGLllFIDEADAFLceRnk---tymSEaqRsaLNAlLfRTG--dqSrdivLvlAtNrpgdlD 499 (630)
T KOG0742|consen 425 AQAVTKIHKLFDWAKKSRRGLLLFIDEADAFLCERNK---TYMSEAQRSALNALLFRTG--DQSRDIVLVLATNRPGDLD 499 (630)
T ss_pred hHHHHHHHHHHHHHhhcccceEEEehhhHHHHHHhch---hhhcHHHHHHHHHHHHHhc--ccccceEEEeccCCccchh
Confidence 3345678899999987654 48899999999888764 3456777888999986543 3346789999999999999
Q ss_pred hhhhCCCCcceEEEecCCCHHHHHHHHHHHHhcCC----------------------CCCCCC---CCHHHHHHhCCCCC
Q 007575 486 PALRRPGRFDRVVMVETPDKIGREAILKVHVSKKE----------------------LPLAKD---IDLGDIASMTTGFT 540 (597)
Q Consensus 486 ~aLlRpgRFd~~I~v~~Pd~~eR~eILk~~l~~~~----------------------~~l~~d---vdl~~LA~~t~G~S 540 (597)
.++-. |+|.+|+|++|..++|..+|..|+.++- +.+..+ -.+.+.|+.|+|||
T Consensus 500 sAV~D--Ride~veFpLPGeEERfkll~lYlnkyi~~~~~~~~~~~~~~lfkk~sQ~i~l~~~~t~~~~~EaAkkTeGfS 577 (630)
T KOG0742|consen 500 SAVND--RIDEVVEFPLPGEEERFKLLNLYLNKYILKPATSGKPGKWSHLFKKESQRIKLAGFDTGRKCSEAAKKTEGFS 577 (630)
T ss_pred HHHHh--hhhheeecCCCChHHHHHHHHHHHHHHhcCcCCCCCCchhhHHHhhhhheeeeccchHHHHHHHHHHhccCCc
Confidence 99988 9999999999999999999999987531 011110 01577889999999
Q ss_pred HHHHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHhcccccc
Q 007575 541 GADLANLVNEAALLAGRLNKVVVEKIDFIHAVERSIAVSLSL 582 (597)
Q Consensus 541 gaDL~~Lv~eAal~A~r~~~~~It~~d~~~Al~~v~~g~~k~ 582 (597)
|++|..|+---...++-+....++..-|++.++..+...+.+
T Consensus 578 GREiakLva~vQAavYgsedcvLd~~lf~e~v~ykv~eHqqr 619 (630)
T KOG0742|consen 578 GREIAKLVASVQAAVYGSEDCVLDEALFDERVDYKVQEHQQR 619 (630)
T ss_pred HHHHHHHHHHHHHHHhcccchhhHHHHHHHHHHHHHHHHHHH
Confidence 999999987655555556677788888888887776665544
No 42
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=99.88 E-value=6.4e-22 Score=178.56 Aligned_cols=130 Identities=45% Similarity=0.671 Sum_probs=117.5
Q ss_pred eEEeCCCCChHHHHHHHHHHhcCCCeeeechhhhHHHHhhcchHHHHHHHHHHHhcC-CeEEEEcCcchhhhhcCCcccc
Q 007575 368 VLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFVELYVGMGASRVRDLFARAKKEA-PSIIFIDEIDAVAKSRDGRFRI 446 (597)
Q Consensus 368 VLL~GPPGTGKT~LArAIA~el~~pfi~is~sef~~~~vG~~e~~vr~lF~~A~~~a-P~ILfIDEIDaL~~~r~~~~~~ 446 (597)
|||+||||||||++|+++|+.++.+++.++++++.+.+.+...+.++++|.++.... ||||||||+|.+....+ .
T Consensus 1 ill~G~~G~GKT~l~~~la~~l~~~~~~i~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~vl~iDe~d~l~~~~~----~ 76 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQYLGFPFIEIDGSELISSYAGDSEQKIRDFFKKAKKSAKPCVLFIDEIDKLFPKSQ----P 76 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHHTTSEEEEEETTHHHTSSTTHHHHHHHHHHHHHHHTSTSEEEEEETGGGTSHHCS----T
T ss_pred CEEECcCCCCeeHHHHHHHhhcccccccccccccccccccccccccccccccccccccceeeeeccchhcccccc----c
Confidence 699999999999999999999999999999999998889999999999999999888 99999999999998762 2
Q ss_pred cchhHHHHHHHHHHHHhcCCCCC-CcEEEEEecCCCCCCChhhhCCCCcceEEEecC
Q 007575 447 VSNDEREQTLNQLLTEMDGFDSN-SAVIVLGATNRSDVLDPALRRPGRFDRVVMVET 502 (597)
Q Consensus 447 ~~~~e~eqtLnqLL~emdg~~~~-~~VIVIaaTNrpd~LD~aLlRpgRFd~~I~v~~ 502 (597)
.........+++|+..|+..... .+++||++||.++.++++++| +||+..+++++
T Consensus 77 ~~~~~~~~~~~~L~~~l~~~~~~~~~~~vI~ttn~~~~i~~~l~~-~rf~~~i~~~~ 132 (132)
T PF00004_consen 77 SSSSFEQRLLNQLLSLLDNPSSKNSRVIVIATTNSPDKIDPALLR-SRFDRRIEFPL 132 (132)
T ss_dssp SSSHHHHHHHHHHHHHHHTTTTTSSSEEEEEEESSGGGSCHHHHS-TTSEEEEEE-S
T ss_pred ccccccccccceeeecccccccccccceeEEeeCChhhCCHhHHh-CCCcEEEEcCC
Confidence 35566778889999999987765 669999999999999999998 89999999864
No 43
>KOG0743 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.87 E-value=7.7e-22 Score=210.82 Aligned_cols=207 Identities=29% Similarity=0.382 Sum_probs=162.2
Q ss_pred CcccccccCChHHHHHHHH-HHHHhcChhHHhhcCCCCCCceEEeCCCCChHHHHHHHHHHhcCCCeeeechhhhHHHHh
Q 007575 328 TITFADVAGVDEAKEELEE-IVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFVELYV 406 (597)
Q Consensus 328 ~vtf~dV~G~de~k~~L~e-iv~~l~~p~~~~~lg~~~p~gVLL~GPPGTGKT~LArAIA~el~~pfi~is~sef~~~~v 406 (597)
+-+|+.|+-..+.|+++.+ +.+|.+..+-|.+.|....+|.|||||||||||+++.|+|++++..++-++.++.
T Consensus 197 pstF~TlaMd~~~K~~I~~Dl~~F~k~k~~YkrvGkawKRGYLLYGPPGTGKSS~IaAmAn~L~ydIydLeLt~v----- 271 (457)
T KOG0743|consen 197 PSTFETLAMDPDLKERIIDDLDDFIKGKDFYKRVGKAWKRGYLLYGPPGTGKSSFIAAMANYLNYDIYDLELTEV----- 271 (457)
T ss_pred CCCccccccChhHHHHHHHHHHHHHhcchHHHhcCcchhccceeeCCCCCCHHHHHHHHHhhcCCceEEeeeccc-----
Confidence 3889999999999988876 5566889999999999999999999999999999999999999999998887664
Q ss_pred hcchHHHHHHHHHHHhcCCeEEEEcCcchhhhhcCCcccc--cch-hHHHHHHHHHHHHhcCCCCCC--cEEEEEecCCC
Q 007575 407 GMGASRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRI--VSN-DEREQTLNQLLTEMDGFDSNS--AVIVLGATNRS 481 (597)
Q Consensus 407 G~~e~~vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~--~~~-~e~eqtLnqLL~emdg~~~~~--~VIVIaaTNrp 481 (597)
+.... ++.++..+.. .+||+|++||+-...++..... ..+ ....-++..||+.+||+-+.. .-|||.|||.+
T Consensus 272 ~~n~d-Lr~LL~~t~~--kSIivIEDIDcs~~l~~~~~~~~~~~~~~~~~VTlSGLLNfiDGlwSscg~ERIivFTTNh~ 348 (457)
T KOG0743|consen 272 KLDSD-LRHLLLATPN--KSILLIEDIDCSFDLRERRKKKKENFEGDLSRVTLSGLLNFLDGLWSSCGDERIIVFTTNHK 348 (457)
T ss_pred cCcHH-HHHHHHhCCC--CcEEEEeecccccccccccccccccccCCcceeehHHhhhhhccccccCCCceEEEEecCCh
Confidence 22223 7777765543 4699999999976533221110 111 123468899999999997765 68899999999
Q ss_pred CCCChhhhCCCCcceEEEecCCCHHHHHHHHHHHHhcCC-CCCCCCCCHHHHHHhCCC--CCHHHHHHH
Q 007575 482 DVLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKKE-LPLAKDIDLGDIASMTTG--FTGADLANL 547 (597)
Q Consensus 482 d~LD~aLlRpgRFd~~I~v~~Pd~~eR~eILk~~l~~~~-~~l~~dvdl~~LA~~t~G--~SgaDL~~L 547 (597)
+.|||||+||||.|++|++..-+..+.+.+++.++.-.. ..+ .++|.+...+ .||||+...
T Consensus 349 EkLDPALlRpGRmDmhI~mgyCtf~~fK~La~nYL~~~~~h~L-----~~eie~l~~~~~~tPA~V~e~ 412 (457)
T KOG0743|consen 349 EKLDPALLRPGRMDMHIYMGYCTFEAFKTLASNYLGIEEDHRL-----FDEIERLIEETEVTPAQVAEE 412 (457)
T ss_pred hhcCHhhcCCCcceeEEEcCCCCHHHHHHHHHHhcCCCCCcch-----hHHHHHHhhcCccCHHHHHHH
Confidence 999999999999999999999999999999999986432 222 3444444333 599998653
No 44
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=99.84 E-value=7.4e-20 Score=193.11 Aligned_cols=215 Identities=25% Similarity=0.290 Sum_probs=165.8
Q ss_pred CCcccccccCChHHHHHHHHHHHHhcChhHHhhcCCCCCCceEEeCCCCChHHHHHHHHHHhcCCCeeeechhhhHHHHh
Q 007575 327 DTITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFVELYV 406 (597)
Q Consensus 327 ~~vtf~dV~G~de~k~~L~eiv~~l~~p~~~~~lg~~~p~gVLL~GPPGTGKT~LArAIA~el~~pfi~is~sef~~~~v 406 (597)
.+.+|++++|+++.++.|..++...+.. ..++.++||+||||||||++|+++|++++..+..++++.+.
T Consensus 20 rP~~~~~~vG~~~~~~~l~~~l~~~~~~-------~~~~~~~ll~GppG~GKT~la~~ia~~l~~~~~~~~~~~~~---- 88 (328)
T PRK00080 20 RPKSLDEFIGQEKVKENLKIFIEAAKKR-------GEALDHVLLYGPPGLGKTTLANIIANEMGVNIRITSGPALE---- 88 (328)
T ss_pred CcCCHHHhcCcHHHHHHHHHHHHHHHhc-------CCCCCcEEEECCCCccHHHHHHHHHHHhCCCeEEEeccccc----
Confidence 4568999999999999999988754322 24567899999999999999999999999988877665331
Q ss_pred hcchHHHHHHHHHHHhcCCeEEEEcCcchhhhhcCCcccccchhHHHHHHHHHHHHhcCCC----------------CCC
Q 007575 407 GMGASRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFD----------------SNS 470 (597)
Q Consensus 407 G~~e~~vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~eqtLnqLL~emdg~~----------------~~~ 470 (597)
....+..++... ..++||||||||.+.... + +.|...|+.+. .-.
T Consensus 89 --~~~~l~~~l~~l--~~~~vl~IDEi~~l~~~~------------~---e~l~~~~e~~~~~~~l~~~~~~~~~~~~l~ 149 (328)
T PRK00080 89 --KPGDLAAILTNL--EEGDVLFIDEIHRLSPVV------------E---EILYPAMEDFRLDIMIGKGPAARSIRLDLP 149 (328)
T ss_pred --ChHHHHHHHHhc--ccCCEEEEecHhhcchHH------------H---HHHHHHHHhcceeeeeccCccccceeecCC
Confidence 122334444433 346799999999985321 1 12233333221 113
Q ss_pred cEEEEEecCCCCCCChhhhCCCCcceEEEecCCCHHHHHHHHHHHHhcCCCCCCCCCCHHHHHHhCCCCCHHHHHHHHHH
Q 007575 471 AVIVLGATNRSDVLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTTGFTGADLANLVNE 550 (597)
Q Consensus 471 ~VIVIaaTNrpd~LD~aLlRpgRFd~~I~v~~Pd~~eR~eILk~~l~~~~~~l~~dvdl~~LA~~t~G~SgaDL~~Lv~e 550 (597)
++.+|++||++..++++|++ ||...+.++.|+.+++.+|++..+...++.+.++. ++.|+..+.| +++.+.++++.
T Consensus 150 ~~~li~at~~~~~l~~~L~s--Rf~~~~~l~~~~~~e~~~il~~~~~~~~~~~~~~~-~~~ia~~~~G-~pR~a~~~l~~ 225 (328)
T PRK00080 150 PFTLIGATTRAGLLTSPLRD--RFGIVQRLEFYTVEELEKIVKRSARILGVEIDEEG-ALEIARRSRG-TPRIANRLLRR 225 (328)
T ss_pred CceEEeecCCcccCCHHHHH--hcCeeeecCCCCHHHHHHHHHHHHHHcCCCcCHHH-HHHHHHHcCC-CchHHHHHHHH
Confidence 47889999999999999988 99989999999999999999999988777776664 8899999987 56889999998
Q ss_pred HHHHHHhcCCCcccHHHHHHHHHHH
Q 007575 551 AALLAGRLNKVVVEKIDFIHAVERS 575 (597)
Q Consensus 551 Aal~A~r~~~~~It~~d~~~Al~~v 575 (597)
+...|...+...|+.+++..+++.+
T Consensus 226 ~~~~a~~~~~~~I~~~~v~~~l~~~ 250 (328)
T PRK00080 226 VRDFAQVKGDGVITKEIADKALDML 250 (328)
T ss_pred HHHHHHHcCCCCCCHHHHHHHHHHh
Confidence 8888877667789999999998764
No 45
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=99.84 E-value=1e-19 Score=189.17 Aligned_cols=212 Identities=23% Similarity=0.317 Sum_probs=160.0
Q ss_pred ccccccCChHHHHHHHHHHHHhcChhHHhhcCCCCCCceEEeCCCCChHHHHHHHHHHhcCCCeeeechhhhHHHHhhcc
Q 007575 330 TFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFVELYVGMG 409 (597)
Q Consensus 330 tf~dV~G~de~k~~L~eiv~~l~~p~~~~~lg~~~p~gVLL~GPPGTGKT~LArAIA~el~~pfi~is~sef~~~~vG~~ 409 (597)
+|+|++|++++++.|..++...... ...+.+++|+||||||||+||+++|.+++.++..+.++....
T Consensus 2 ~~~~~iG~~~~~~~l~~~l~~~~~~-------~~~~~~~ll~Gp~G~GKT~la~~ia~~~~~~~~~~~~~~~~~------ 68 (305)
T TIGR00635 2 LLAEFIGQEKVKEQLQLFIEAAKMR-------QEALDHLLLYGPPGLGKTTLAHIIANEMGVNLKITSGPALEK------ 68 (305)
T ss_pred CHHHHcCHHHHHHHHHHHHHHHHhc-------CCCCCeEEEECCCCCCHHHHHHHHHHHhCCCEEEeccchhcC------
Confidence 6899999999999999888643221 234567999999999999999999999998887766543211
Q ss_pred hHHHHHHHHHHHhcCCeEEEEcCcchhhhhcCCcccccchhHHHHHHHHHHHHhcCCC----------------CCCcEE
Q 007575 410 ASRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFD----------------SNSAVI 473 (597)
Q Consensus 410 e~~vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~eqtLnqLL~emdg~~----------------~~~~VI 473 (597)
...+...+... ..+.||||||+|.+..... +.|+..|++.. ...+++
T Consensus 69 ~~~l~~~l~~~--~~~~vl~iDEi~~l~~~~~---------------e~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 131 (305)
T TIGR00635 69 PGDLAAILTNL--EEGDVLFIDEIHRLSPAVE---------------ELLYPAMEDFRLDIVIGKGPSARSVRLDLPPFT 131 (305)
T ss_pred chhHHHHHHhc--ccCCEEEEehHhhhCHHHH---------------HHhhHHHhhhheeeeeccCccccceeecCCCeE
Confidence 12223333322 3467999999999864321 22333333221 123488
Q ss_pred EEEecCCCCCCChhhhCCCCcceEEEecCCCHHHHHHHHHHHHhcCCCCCCCCCCHHHHHHhCCCCCHHHHHHHHHHHHH
Q 007575 474 VLGATNRSDVLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTTGFTGADLANLVNEAAL 553 (597)
Q Consensus 474 VIaaTNrpd~LD~aLlRpgRFd~~I~v~~Pd~~eR~eILk~~l~~~~~~l~~dvdl~~LA~~t~G~SgaDL~~Lv~eAal 553 (597)
+|++||++..+++++++ ||...+.+++|+.+++.++++..+...+..+.++ .++.|++.+.| .++.+.++++.+..
T Consensus 132 li~~t~~~~~l~~~l~s--R~~~~~~l~~l~~~e~~~il~~~~~~~~~~~~~~-al~~ia~~~~G-~pR~~~~ll~~~~~ 207 (305)
T TIGR00635 132 LVGATTRAGMLTSPLRD--RFGIILRLEFYTVEELAEIVSRSAGLLNVEIEPE-AALEIARRSRG-TPRIANRLLRRVRD 207 (305)
T ss_pred EEEecCCccccCHHHHh--hcceEEEeCCCCHHHHHHHHHHHHHHhCCCcCHH-HHHHHHHHhCC-CcchHHHHHHHHHH
Confidence 99999999999999998 9988899999999999999999988766666655 47889999887 45788899998877
Q ss_pred HHHhcCCCcccHHHHHHHHHHH
Q 007575 554 LAGRLNKVVVEKIDFIHAVERS 575 (597)
Q Consensus 554 ~A~r~~~~~It~~d~~~Al~~v 575 (597)
.|...+...|+.+++..++..+
T Consensus 208 ~a~~~~~~~it~~~v~~~l~~l 229 (305)
T TIGR00635 208 FAQVRGQKIINRDIALKALEML 229 (305)
T ss_pred HHHHcCCCCcCHHHHHHHHHHh
Confidence 7766676779999999999883
No 46
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.82 E-value=2.1e-19 Score=198.80 Aligned_cols=238 Identities=24% Similarity=0.243 Sum_probs=186.3
Q ss_pred ccccCChHHHHHHHHHHHHhcChhHHhhcCCCCCCceEEeCCCCChHHHHHHHHHHhcC----CCeeeechhhhHHHHhh
Q 007575 332 ADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAE----VPFISCSASEFVELYVG 407 (597)
Q Consensus 332 ~dV~G~de~k~~L~eiv~~l~~p~~~~~lg~~~p~gVLL~GPPGTGKT~LArAIA~el~----~pfi~is~sef~~~~vG 407 (597)
.|++-..++|++..+ ....| ...+.+|||+||+|+|||.||++++.++. +.+..++|+.+......
T Consensus 408 ~d~i~~~s~kke~~n---~~~sp-------v~~~~~Ill~G~~GsGKT~L~kal~~~~~k~~~~hv~~v~Cs~l~~~~~e 477 (952)
T KOG0735|consen 408 HDFIQVPSYKKENAN---QELSP-------VFRHGNILLNGPKGSGKTNLVKALFDYYSKDLIAHVEIVSCSTLDGSSLE 477 (952)
T ss_pred Cceeecchhhhhhhh---hhccc-------ccccccEEEeCCCCCCHhHHHHHHHHHhccccceEEEEEechhccchhHH
Confidence 456666666655443 11222 34466899999999999999999999874 56777899988777777
Q ss_pred cchHHHHHHHHHHHhcCCeEEEEcCcchhhhhcCCcccccchhHHHHHHHHHHHHh-cCC-CCCCcEEEEEecCCCCCCC
Q 007575 408 MGASRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEM-DGF-DSNSAVIVLGATNRSDVLD 485 (597)
Q Consensus 408 ~~e~~vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~eqtLnqLL~em-dg~-~~~~~VIVIaaTNrpd~LD 485 (597)
...+.++.+|.+|.+++|+||++|++|.|....+. ..+..+...+.++.+++.+ ..+ ..+..+.+||+.+....|+
T Consensus 478 ~iQk~l~~vfse~~~~~PSiIvLDdld~l~~~s~~--e~~q~~~~~~rla~flnqvi~~y~~~~~~ia~Iat~qe~qtl~ 555 (952)
T KOG0735|consen 478 KIQKFLNNVFSEALWYAPSIIVLDDLDCLASASSN--ENGQDGVVSERLAAFLNQVIKIYLKRNRKIAVIATGQELQTLN 555 (952)
T ss_pred HHHHHHHHHHHHHHhhCCcEEEEcchhhhhccCcc--cCCcchHHHHHHHHHHHHHHHHHHccCcEEEEEEechhhhhcC
Confidence 77888999999999999999999999999873322 2344555556666666443 222 3345578999999999999
Q ss_pred hhhhCCCCcceEEEecCCCHHHHHHHHHHHHhcCCCCCCCCCCHHHHHHhCCCCCHHHHHHHHHHHHHHHHhc----CCC
Q 007575 486 PALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTTGFTGADLANLVNEAALLAGRL----NKV 561 (597)
Q Consensus 486 ~aLlRpgRFd~~I~v~~Pd~~eR~eILk~~l~~~~~~l~~dvdl~~LA~~t~G~SgaDL~~Lv~eAal~A~r~----~~~ 561 (597)
|.|.+|++|+.++.++.|+..+|.+||+..+++...... .-|++.++..|+||...||..++.+|...|... +..
T Consensus 556 ~~L~s~~~Fq~~~~L~ap~~~~R~~IL~~~~s~~~~~~~-~~dLd~ls~~TEGy~~~DL~ifVeRai~~a~leris~~~k 634 (952)
T KOG0735|consen 556 PLLVSPLLFQIVIALPAPAVTRRKEILTTIFSKNLSDIT-MDDLDFLSVKTEGYLATDLVIFVERAIHEAFLERISNGPK 634 (952)
T ss_pred hhhcCccceEEEEecCCcchhHHHHHHHHHHHhhhhhhh-hHHHHHHHHhcCCccchhHHHHHHHHHHHHHHHHhccCcc
Confidence 999999999999999999999999999999987542222 225777999999999999999999999988732 334
Q ss_pred cccHHHHHHHHHHHhcccccc
Q 007575 562 VVEKIDFIHAVERSIAVSLSL 582 (597)
Q Consensus 562 ~It~~d~~~Al~~v~~g~~k~ 582 (597)
.+|.++|.++++.+.+...+.
T Consensus 635 lltke~f~ksL~~F~P~aLR~ 655 (952)
T KOG0735|consen 635 LLTKELFEKSLKDFVPLALRG 655 (952)
T ss_pred cchHHHHHHHHHhcChHHhhh
Confidence 899999999999998877654
No 47
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=99.82 E-value=1.2e-19 Score=180.50 Aligned_cols=195 Identities=25% Similarity=0.348 Sum_probs=135.5
Q ss_pred cCCCCcccccccCChHHHHHHHHHHHHhcChhHHhhcCCCCCCceEEeCCCCChHHHHHHHHHHhcCCCeeeechhhhHH
Q 007575 324 EQGDTITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFVE 403 (597)
Q Consensus 324 ~~~~~vtf~dV~G~de~k~~L~eiv~~l~~p~~~~~lg~~~p~gVLL~GPPGTGKT~LArAIA~el~~pfi~is~sef~~ 403 (597)
+...+-+|+|++|++++++.++-+++..+.. .....++|||||||+|||+||+.||++++++|...+++.+.
T Consensus 16 ~~lRP~~L~efiGQ~~l~~~l~i~i~aa~~r-------~~~l~h~lf~GPPG~GKTTLA~IIA~e~~~~~~~~sg~~i~- 87 (233)
T PF05496_consen 16 ERLRPKSLDEFIGQEHLKGNLKILIRAAKKR-------GEALDHMLFYGPPGLGKTTLARIIANELGVNFKITSGPAIE- 87 (233)
T ss_dssp HHTS-SSCCCS-S-HHHHHHHHHHHHHHHCT-------TS---EEEEESSTTSSHHHHHHHHHHHCT--EEEEECCC---
T ss_pred HhcCCCCHHHccCcHHHHhhhHHHHHHHHhc-------CCCcceEEEECCCccchhHHHHHHHhccCCCeEeccchhhh-
Confidence 3445678999999999999998888765432 12345799999999999999999999999999998886431
Q ss_pred HHhhcchHHHHHHHHHHHhcCCeEEEEcCcchhhhhcCCcccccchhHHHHHHHHHHHHhcCCCC---------------
Q 007575 404 LYVGMGASRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDS--------------- 468 (597)
Q Consensus 404 ~~vG~~e~~vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~eqtLnqLL~emdg~~~--------------- 468 (597)
....+..++.... ...||||||||.+.+..+ ..|+..|+.+.-
T Consensus 88 -----k~~dl~~il~~l~--~~~ILFIDEIHRlnk~~q---------------e~LlpamEd~~idiiiG~g~~ar~~~~ 145 (233)
T PF05496_consen 88 -----KAGDLAAILTNLK--EGDILFIDEIHRLNKAQQ---------------EILLPAMEDGKIDIIIGKGPNARSIRI 145 (233)
T ss_dssp -----SCHHHHHHHHT----TT-EEEECTCCC--HHHH---------------HHHHHHHHCSEEEEEBSSSSS-BEEEE
T ss_pred -----hHHHHHHHHHhcC--CCcEEEEechhhccHHHH---------------HHHHHHhccCeEEEEeccccccceeec
Confidence 1233334444433 346999999999975532 567777775421
Q ss_pred -CCcEEEEEecCCCCCCChhhhCCCCcceEEEecCCCHHHHHHHHHHHHhcCCCCCCCCCCHHHHHHhCCCCCHHHHHHH
Q 007575 469 -NSAVIVLGATNRSDVLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTTGFTGADLANL 547 (597)
Q Consensus 469 -~~~VIVIaaTNrpd~LD~aLlRpgRFd~~I~v~~Pd~~eR~eILk~~l~~~~~~l~~dvdl~~LA~~t~G~SgaDL~~L 547 (597)
-.++.+|+||++...|.+.|+. ||.....+..++.++..+|++......++++.++ ...+||+++.| +|+-..++
T Consensus 146 ~l~~FTligATTr~g~ls~pLrd--RFgi~~~l~~Y~~~el~~Iv~r~a~~l~i~i~~~-~~~~Ia~rsrG-tPRiAnrl 221 (233)
T PF05496_consen 146 NLPPFTLIGATTRAGLLSSPLRD--RFGIVLRLEFYSEEELAKIVKRSARILNIEIDED-AAEEIARRSRG-TPRIANRL 221 (233)
T ss_dssp E----EEEEEESSGCCTSHCCCT--TSSEEEE----THHHHHHHHHHCCHCTT-EE-HH-HHHHHHHCTTT-SHHHHHHH
T ss_pred cCCCceEeeeeccccccchhHHh--hcceecchhcCCHHHHHHHHHHHHHHhCCCcCHH-HHHHHHHhcCC-ChHHHHHH
Confidence 1358899999999999999988 9998889999999999999998887777777665 47899999987 78888888
Q ss_pred HHHHH
Q 007575 548 VNEAA 552 (597)
Q Consensus 548 v~eAa 552 (597)
++++.
T Consensus 222 l~rvr 226 (233)
T PF05496_consen 222 LRRVR 226 (233)
T ss_dssp HHHHC
T ss_pred HHHHH
Confidence 87653
No 48
>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.82 E-value=1.3e-19 Score=186.22 Aligned_cols=241 Identities=23% Similarity=0.292 Sum_probs=176.5
Q ss_pred cccccCChHHHHHHHHHHHH-hcChhHHhhcC-CCCCCceEEeCCCCChHHHHHHHHHHhc---------CCCeeeechh
Q 007575 331 FADVAGVDEAKEELEEIVEF-LRSPDKYIRLG-ARPPRGVLLVGLPGTGKTLLAKAVAGEA---------EVPFISCSAS 399 (597)
Q Consensus 331 f~dV~G~de~k~~L~eiv~~-l~~p~~~~~lg-~~~p~gVLL~GPPGTGKT~LArAIA~el---------~~pfi~is~s 399 (597)
|+.++=....|++|...+.. +...++-..-. ....+-+||+||||||||+|+||+|+.+ ....+.+++.
T Consensus 141 WEsLiyds~lK~~ll~Ya~s~l~fsek~vntnlIt~NRliLlhGPPGTGKTSLCKaLaQkLSIR~~~~y~~~~liEinsh 220 (423)
T KOG0744|consen 141 WESLIYDSNLKERLLSYAASALLFSEKKVNTNLITWNRLILLHGPPGTGKTSLCKALAQKLSIRTNDRYYKGQLIEINSH 220 (423)
T ss_pred HHHHhhcccHHHHHHHHHHHHHHHHhcCCCCceeeeeeEEEEeCCCCCChhHHHHHHHHhheeeecCccccceEEEEehh
Confidence 55666666778777776543 22222111100 2234669999999999999999999976 3567899999
Q ss_pred hhHHHHhhcchHHHHHHHHHHHhcC---Ce--EEEEcCcchhhhhcCCcccccchhHHHHHHHHHHHHhcCCCCCCcEEE
Q 007575 400 EFVELYVGMGASRVRDLFARAKKEA---PS--IIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIV 474 (597)
Q Consensus 400 ef~~~~vG~~e~~vr~lF~~A~~~a---P~--ILfIDEIDaL~~~r~~~~~~~~~~e~eqtLnqLL~emdg~~~~~~VIV 474 (597)
.++++|.+++.+.+..+|++..... .+ .++|||+++|+..|............-+++|.+|++||.+....+|++
T Consensus 221 sLFSKWFsESgKlV~kmF~kI~ELv~d~~~lVfvLIDEVESLa~aR~s~~S~~EpsDaIRvVNalLTQlDrlK~~~Nvli 300 (423)
T KOG0744|consen 221 SLFSKWFSESGKLVAKMFQKIQELVEDRGNLVFVLIDEVESLAAARTSASSRNEPSDAIRVVNALLTQLDRLKRYPNVLI 300 (423)
T ss_pred HHHHHHHhhhhhHHHHHHHHHHHHHhCCCcEEEEEeHHHHHHHHHHHhhhcCCCCchHHHHHHHHHHHHHHhccCCCEEE
Confidence 9999999999999999998876532 23 556999999998885443334444556889999999999999999999
Q ss_pred EEecCCCCCCChhhhCCCCcceEEEecCCCHHHHHHHHHHHHhcC---CCCCCCC-------------CCHHHHHH-hCC
Q 007575 475 LGATNRSDVLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKK---ELPLAKD-------------IDLGDIAS-MTT 537 (597)
Q Consensus 475 IaaTNrpd~LD~aLlRpgRFd~~I~v~~Pd~~eR~eILk~~l~~~---~~~l~~d-------------vdl~~LA~-~t~ 537 (597)
++|+|-.+.||.|+.. |-|-+.++++|+...+.+|++..+.+. ++-+... .....++. .+.
T Consensus 301 L~TSNl~~siD~AfVD--RADi~~yVG~Pt~~ai~~IlkscieEL~~~gIi~~~~~s~~~~~~i~~~~~~~~~~~~~~~~ 378 (423)
T KOG0744|consen 301 LATSNLTDSIDVAFVD--RADIVFYVGPPTAEAIYEILKSCIEELISSGIILFHQRSTGVKEFIKYQKALRNILIELSTV 378 (423)
T ss_pred EeccchHHHHHHHhhh--HhhheeecCCccHHHHHHHHHHHHHHHHhcCeeeeeccchhhhHHhHhhHhHHHHHHHHhhc
Confidence 9999999999999999 999999999999999999999887641 1111111 11223333 358
Q ss_pred CCCHHHHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHH
Q 007575 538 GFTGADLANLVNEAALLAGRLNKVVVEKIDFIHAVERS 575 (597)
Q Consensus 538 G~SgaDL~~Lv~eAal~A~r~~~~~It~~d~~~Al~~v 575 (597)
|.||+.|+.|=--|.. .--....|+.++|..|+-..
T Consensus 379 gLSGRtlrkLP~Laha--~y~~~~~v~~~~fl~al~ea 414 (423)
T KOG0744|consen 379 GLSGRTLRKLPLLAHA--EYFRTFTVDLSNFLLALLEA 414 (423)
T ss_pred CCccchHhhhhHHHHH--hccCCCccChHHHHHHHHHH
Confidence 9999999887554432 22234578888887775443
No 49
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=99.80 E-value=2.6e-18 Score=190.79 Aligned_cols=220 Identities=46% Similarity=0.696 Sum_probs=196.7
Q ss_pred hcChhHHhhcCCCCCCceEEeCCCCChHHHHHHHHHHhcCCCeeeechhhhHHHHhhcchHHHHHHHHHHHhcCCeEEEE
Q 007575 351 LRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFVELYVGMGASRVRDLFARAKKEAPSIIFI 430 (597)
Q Consensus 351 l~~p~~~~~lg~~~p~gVLL~GPPGTGKT~LArAIA~el~~pfi~is~sef~~~~vG~~e~~vr~lF~~A~~~aP~ILfI 430 (597)
+..+..+...+..++++++++||||||||+++++++.+ +..++.+++++....++|..+...+.+|..+...+|+++++
T Consensus 4 ~~~~~~~~~~~~~~~~~v~~~g~~~~~~t~~~~~~a~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~ii~~ 82 (494)
T COG0464 4 LKEPELFKKLGIEPPKGVLLHGPPGTGKTLLARALANE-GAEFLSINGPEILSKYVGESELRLRELFEEAEKLAPSIIFI 82 (494)
T ss_pred ccCHHHHHHhCCCCCCCceeeCCCCCchhHHHHHHHhc-cCcccccCcchhhhhhhhHHHHHHHHHHHHHHHhCCCeEee
Confidence 34667788889999999999999999999999999999 77678899999999999999999999999999999999999
Q ss_pred cCcchhhhhcCCcccccchhHHHHHHHHHHHHhcCCCCCCcEEEEEecCCCCCCChhhhCCCCcceEEEecCCCHHHHHH
Q 007575 431 DEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATNRSDVLDPALRRPGRFDRVVMVETPDKIGREA 510 (597)
Q Consensus 431 DEIDaL~~~r~~~~~~~~~~e~eqtLnqLL~emdg~~~~~~VIVIaaTNrpd~LD~aLlRpgRFd~~I~v~~Pd~~eR~e 510 (597)
||+|.+.+.+.. .........+.+++..|+++. ...+++++.||++..+++++++||||++.+.+..|+...+.+
T Consensus 83 d~~~~~~~~~~~----~~~~~~~~v~~~l~~~~d~~~-~~~v~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~e 157 (494)
T COG0464 83 DEIDALAPKRSS----DQGEVERRVVAQLLALMDGLK-RGQVIVIGATNRPDGLDPAKRRPGRFDREIEVNLPDEAGRLE 157 (494)
T ss_pred chhhhcccCccc----cccchhhHHHHHHHHhccccc-CCceEEEeecCCccccChhHhCccccceeeecCCCCHHHHHH
Confidence 999999988764 234455778899999999998 444889999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCCCCCCCCCHHHHHHhCCCCCHHHHHHHHHHHHHHHHhcC------CCcccHHHHHHHHHHHhcc
Q 007575 511 ILKVHVSKKELPLAKDIDLGDIASMTTGFTGADLANLVNEAALLAGRLN------KVVVEKIDFIHAVERSIAV 578 (597)
Q Consensus 511 ILk~~l~~~~~~l~~dvdl~~LA~~t~G~SgaDL~~Lv~eAal~A~r~~------~~~It~~d~~~Al~~v~~g 578 (597)
|+..+... +.+..+.++..++..+.|++++++..++.++...+.++. ...++.+++.++++++...
T Consensus 158 i~~~~~~~--~~~~~~~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~l~~~~~~ 229 (494)
T COG0464 158 ILQIHTRL--MFLGPPGTGKTLAARTVGKSGADLGALAKEAALRELRRAIDLVGEYIGVTEDDFEEALKKVLPS 229 (494)
T ss_pred HHHHHHhc--CCCcccccHHHHHHhcCCccHHHHHHHHHHHHHHHHHhhhccCcccccccHHHHHHHHHhcCcc
Confidence 99998854 456667889999999999999999999999999888875 3568899999999998764
No 50
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=99.79 E-value=1.7e-18 Score=200.74 Aligned_cols=226 Identities=23% Similarity=0.293 Sum_probs=169.0
Q ss_pred CcccccccCChHHHHHHHHHHHHhcChhHHhhcCCCCCCceEEeCCCCChHHHHHHHHHHhc----------CCCeeeec
Q 007575 328 TITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEA----------EVPFISCS 397 (597)
Q Consensus 328 ~vtf~dV~G~de~k~~L~eiv~~l~~p~~~~~lg~~~p~gVLL~GPPGTGKT~LArAIA~el----------~~pfi~is 397 (597)
.-++++++|.++..+.+.+++. .+...+++|+||||||||++|+++|.++ +..++.++
T Consensus 178 ~~~l~~~igr~~ei~~~~~~L~------------~~~~~n~lL~G~pG~GKT~l~~~la~~~~~~~~p~~l~~~~~~~~~ 245 (731)
T TIGR02639 178 NGKIDPLIGREDELERTIQVLC------------RRKKNNPLLVGEPGVGKTAIAEGLALRIAEGKVPENLKNAKIYSLD 245 (731)
T ss_pred cCCCCcccCcHHHHHHHHHHHh------------cCCCCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCeEEEec
Confidence 4578899999998776555543 2234589999999999999999999986 67789999
Q ss_pred hhhhH--HHHhhcchHHHHHHHHHHHhcCCeEEEEcCcchhhhhcCCcccccchhHHHHHHHHHHHHhcCCCCCCcEEEE
Q 007575 398 ASEFV--ELYVGMGASRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVL 475 (597)
Q Consensus 398 ~sef~--~~~vG~~e~~vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~eqtLnqLL~emdg~~~~~~VIVI 475 (597)
++.++ ..|.|+.+++++++|+++....|+||||||||.|.+..... .+..+ ..+.|+..|. +..+.+|
T Consensus 246 ~~~l~a~~~~~g~~e~~l~~i~~~~~~~~~~ILfiDEih~l~~~g~~~--~~~~~----~~~~L~~~l~----~g~i~~I 315 (731)
T TIGR02639 246 MGSLLAGTKYRGDFEERLKAVVSEIEKEPNAILFIDEIHTIVGAGATS--GGSMD----ASNLLKPALS----SGKLRCI 315 (731)
T ss_pred HHHHhhhccccchHHHHHHHHHHHHhccCCeEEEEecHHHHhccCCCC--CccHH----HHHHHHHHHh----CCCeEEE
Confidence 98887 47889999999999999988889999999999998654321 11111 2244555554 4678999
Q ss_pred EecCCCC-----CCChhhhCCCCcceEEEecCCCHHHHHHHHHHHHhc----CCCCCCCCCCHHHHHHhCCCCC-----H
Q 007575 476 GATNRSD-----VLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSK----KELPLAKDIDLGDIASMTTGFT-----G 541 (597)
Q Consensus 476 aaTNrpd-----~LD~aLlRpgRFd~~I~v~~Pd~~eR~eILk~~l~~----~~~~l~~dvdl~~LA~~t~G~S-----g 541 (597)
++||..+ ..|++|.| ||+ .|.++.|+.+++.+||+.+... .++.+.++ .+..++..+..|- |
T Consensus 316 gaTt~~e~~~~~~~d~al~r--Rf~-~i~v~~p~~~~~~~il~~~~~~~e~~~~v~i~~~-al~~~~~ls~ryi~~r~~P 391 (731)
T TIGR02639 316 GSTTYEEYKNHFEKDRALSR--RFQ-KIDVGEPSIEETVKILKGLKEKYEEFHHVKYSDE-ALEAAVELSARYINDRFLP 391 (731)
T ss_pred EecCHHHHHHHhhhhHHHHH--hCc-eEEeCCCCHHHHHHHHHHHHHHHHhccCcccCHH-HHHHHHHhhhcccccccCC
Confidence 9999743 57999999 997 7999999999999999976653 22334433 4677777665553 4
Q ss_pred HHHHHHHHHHHHHHHhc----CCCcccHHHHHHHHHHHhccc
Q 007575 542 ADLANLVNEAALLAGRL----NKVVVEKIDFIHAVERSIAVS 579 (597)
Q Consensus 542 aDL~~Lv~eAal~A~r~----~~~~It~~d~~~Al~~v~~g~ 579 (597)
.....++++|+.....+ ....|+.+|+..++.+...-+
T Consensus 392 ~kai~lld~a~a~~~~~~~~~~~~~v~~~~i~~~i~~~tgiP 433 (731)
T TIGR02639 392 DKAIDVIDEAGASFRLRPKAKKKANVSVKDIENVVAKMAHIP 433 (731)
T ss_pred HHHHHHHHHhhhhhhcCcccccccccCHHHHHHHHHHHhCCC
Confidence 55678888887644322 235699999999999875443
No 51
>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]
Probab=99.79 E-value=2.9e-18 Score=191.26 Aligned_cols=206 Identities=27% Similarity=0.431 Sum_probs=172.9
Q ss_pred CCCCCceEEeCCCCChHHHHHHHHHHhcCCCeeeechhhhHHHHhhcchHHHHHHHHHHHhcCCeEEEEcCcchhhhhcC
Q 007575 362 ARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFVELYVGMGASRVRDLFARAKKEAPSIIFIDEIDAVAKSRD 441 (597)
Q Consensus 362 ~~~p~gVLL~GPPGTGKT~LArAIA~el~~pfi~is~sef~~~~vG~~e~~vr~lF~~A~~~aP~ILfIDEIDaL~~~r~ 441 (597)
......+||+|+||||||++++++|.++|.+++.++|.+++....+..+..+...|..|+...|+|||+-++|.++.++.
T Consensus 428 ~~~~~~vLLhG~~g~GK~t~V~~vas~lg~h~~evdc~el~~~s~~~~etkl~~~f~~a~~~~pavifl~~~dvl~id~d 507 (953)
T KOG0736|consen 428 LTLNPSVLLHGPPGSGKTTVVRAVASELGLHLLEVDCYELVAESASHTETKLQAIFSRARRCSPAVLFLRNLDVLGIDQD 507 (953)
T ss_pred cccceEEEEeCCCCCChHHHHHHHHHHhCCceEeccHHHHhhcccchhHHHHHHHHHHHhhcCceEEEEeccceeeecCC
Confidence 34455799999999999999999999999999999999999999999999999999999999999999999999985544
Q ss_pred CcccccchhHHHHHHHHHHHHhcCCC-CCCcEEEEEecCCCCCCChhhhCCCCcceEEEecCCCHHHHHHHHHHHHhcCC
Q 007575 442 GRFRIVSNDEREQTLNQLLTEMDGFD-SNSAVIVLGATNRSDVLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKKE 520 (597)
Q Consensus 442 ~~~~~~~~~e~eqtLnqLL~emdg~~-~~~~VIVIaaTNrpd~LD~aLlRpgRFd~~I~v~~Pd~~eR~eILk~~l~~~~ 520 (597)
+ +.+-...+.+++++. .|.+. ...+++||++|+..+.+++.+++ -|-..|.++.|+.++|.+||+.++..
T Consensus 508 g----ged~rl~~~i~~~ls-~e~~~~~~~~~ivv~t~~s~~~lp~~i~~--~f~~ei~~~~lse~qRl~iLq~y~~~-- 578 (953)
T KOG0736|consen 508 G----GEDARLLKVIRHLLS-NEDFKFSCPPVIVVATTSSIEDLPADIQS--LFLHEIEVPALSEEQRLEILQWYLNH-- 578 (953)
T ss_pred C----chhHHHHHHHHHHHh-cccccCCCCceEEEEeccccccCCHHHHH--hhhhhccCCCCCHHHHHHHHHHHHhc--
Confidence 2 333444556666665 33343 56789999999999999999998 67778999999999999999999976
Q ss_pred CCCCCCCCHHHHHHhCCCCCHHHHHHHHHHHHHHHHhc--------------------CCCcccHHHHHHHHHHHh
Q 007575 521 LPLAKDIDLGDIASMTTGFTGADLANLVNEAALLAGRL--------------------NKVVVEKIDFIHAVERSI 576 (597)
Q Consensus 521 ~~l~~dvdl~~LA~~t~G~SgaDL~~Lv~eAal~A~r~--------------------~~~~It~~d~~~Al~~v~ 576 (597)
..+..++.+..+|.+|.||+.+|+..++..+-..+..+ ....++++||..|+++..
T Consensus 579 ~~~n~~v~~k~~a~~t~gfs~~~L~~l~~~~s~~~~~~i~~~~l~g~~~~~~~~~~~~~~~~l~~edf~kals~~~ 654 (953)
T KOG0736|consen 579 LPLNQDVNLKQLARKTSGFSFGDLEALVAHSSLAAKTRIKNKGLAGGLQEEDEGELCAAGFLLTEEDFDKALSRLQ 654 (953)
T ss_pred cccchHHHHHHHHHhcCCCCHHHHHHHhcCchHHHHHHHHhhcccccchhccccccccccceecHHHHHHHHHHHH
Confidence 46788999999999999999999999988763332221 125689999999998753
No 52
>TIGR02902 spore_lonB ATP-dependent protease LonB. Members of this protein are LonB, a paralog of the ATP-dependent protease La (LonA, TIGR00763). LonB proteins are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore, during sporulation, under control of sigma(F). The lonB gene, despite location immediately upstream of lonA, was shown to be monocistronic. LonB appears able to act on sigma(H) for post-translation control, but lonB mutation did not produce an obvious sporulation defect under the conditions tested. Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and this model selects only one per species as the protein that corresponds to LonB in B. subtilis.
Probab=99.78 E-value=3.1e-18 Score=191.88 Aligned_cols=217 Identities=24% Similarity=0.312 Sum_probs=155.5
Q ss_pred cccCCCCcccccccCChHHHHHHHHHHHHhcChhHHhhcCCCCCCceEEeCCCCChHHHHHHHHHHhc----------CC
Q 007575 322 VSEQGDTITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEA----------EV 391 (597)
Q Consensus 322 ~~~~~~~vtf~dV~G~de~k~~L~eiv~~l~~p~~~~~lg~~~p~gVLL~GPPGTGKT~LArAIA~el----------~~ 391 (597)
..+...+.+|++++|+++..+.|+..+. ...+.++||+||||||||++|++++.++ +.
T Consensus 55 ~~~~~rp~~f~~iiGqs~~i~~l~~al~------------~~~~~~vLi~Ge~GtGKt~lAr~i~~~~~~~~~s~~~~~~ 122 (531)
T TIGR02902 55 LSEKTRPKSFDEIIGQEEGIKALKAALC------------GPNPQHVIIYGPPGVGKTAAARLVLEEAKKNPASPFKEGA 122 (531)
T ss_pred HHHhhCcCCHHHeeCcHHHHHHHHHHHh------------CCCCceEEEECCCCCCHHHHHHHHHHHhhhccCCCcCCCC
Confidence 4455567899999999999888875431 2235689999999999999999998642 46
Q ss_pred Ceeeechhhh-------HHHHhhcch----------------HHHHHHHHHHHhcCCeEEEEcCcchhhhhcCCcccccc
Q 007575 392 PFISCSASEF-------VELYVGMGA----------------SRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVS 448 (597)
Q Consensus 392 pfi~is~sef-------~~~~vG~~e----------------~~vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~ 448 (597)
+|+.++|... .+...+... .....++..| ...+|||||||.|....
T Consensus 123 ~fi~id~~~~~~~~~~~~~~li~~~~~p~~~~~~~~g~~g~~~~~~G~l~~a---~gG~L~IdEI~~L~~~~-------- 191 (531)
T TIGR02902 123 AFVEIDATTARFDERGIADPLIGSVHDPIYQGAGPLGIAGIPQPKPGAVTRA---HGGVLFIDEIGELHPVQ-------- 191 (531)
T ss_pred CEEEEccccccCCccccchhhcCCcccchhccccccccCCcccccCchhhcc---CCcEEEEechhhCCHHH--------
Confidence 8999988631 111111100 0001123333 23599999999986543
Q ss_pred hhHHHHHHHHHHHHhcCC--------------------------CCCCc-EEEEEecCCCCCCChhhhCCCCcceEEEec
Q 007575 449 NDEREQTLNQLLTEMDGF--------------------------DSNSA-VIVLGATNRSDVLDPALRRPGRFDRVVMVE 501 (597)
Q Consensus 449 ~~e~eqtLnqLL~emdg~--------------------------~~~~~-VIVIaaTNrpd~LD~aLlRpgRFd~~I~v~ 501 (597)
.+.|+..|+.. .-+.. .+|++||+.|+.+++++++ |+. .+.++
T Consensus 192 -------q~~LL~~Le~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~rlI~ATt~~p~~L~paLrs--R~~-~I~f~ 261 (531)
T TIGR02902 192 -------MNKLLKVLEDRKVFLDSAYYNSENPNIPSHIHDIFQNGLPADFRLIGATTRNPEEIPPALRS--RCV-EIFFR 261 (531)
T ss_pred -------HHHHHHHHHhCeeeeccccccccCcccccchhhhcccCcccceEEEEEecCCcccCChHHhh--hhh-eeeCC
Confidence 24555544321 00122 4455666789999999998 885 78899
Q ss_pred CCCHHHHHHHHHHHHhcCCCCCCCCCCHHHHHHhCCCCCHHHHHHHHHHHHHHHHhcCCCcccHHHHHHHHHH
Q 007575 502 TPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTTGFTGADLANLVNEAALLAGRLNKVVVEKIDFIHAVER 574 (597)
Q Consensus 502 ~Pd~~eR~eILk~~l~~~~~~l~~dvdl~~LA~~t~G~SgaDL~~Lv~eAal~A~r~~~~~It~~d~~~Al~~ 574 (597)
+++.+++.+|++..+++.++.+.+++ ++.|+.++. +++++.++++.|+..|..+++..|+.+|++.++..
T Consensus 262 pL~~eei~~Il~~~a~k~~i~is~~a-l~~I~~y~~--n~Rel~nll~~Aa~~A~~~~~~~It~~dI~~vl~~ 331 (531)
T TIGR02902 262 PLLDEEIKEIAKNAAEKIGINLEKHA-LELIVKYAS--NGREAVNIVQLAAGIALGEGRKRILAEDIEWVAEN 331 (531)
T ss_pred CCCHHHHHHHHHHHHHHcCCCcCHHH-HHHHHHhhh--hHHHHHHHHHHHHHHHhhCCCcEEcHHHHHHHhCC
Confidence 99999999999999988777766553 777777664 78999999999999998888889999999999763
No 53
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=99.77 E-value=9.7e-18 Score=170.33 Aligned_cols=216 Identities=22% Similarity=0.272 Sum_probs=171.9
Q ss_pred CCcccccccCChHHHHHHHHHHHHhcChhHHhhcCCCCCCceEEeCCCCChHHHHHHHHHHhcCCCeeeechhhhHHHHh
Q 007575 327 DTITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFVELYV 406 (597)
Q Consensus 327 ~~vtf~dV~G~de~k~~L~eiv~~l~~p~~~~~lg~~~p~gVLL~GPPGTGKT~LArAIA~el~~pfi~is~sef~~~~v 406 (597)
.+-+|+|.+|++++|+.|+-++...+.. .....++||+||||.|||+||..+|+|+|+.+-..+++.+..
T Consensus 21 RP~~l~efiGQ~~vk~~L~ifI~AAk~r-------~e~lDHvLl~GPPGlGKTTLA~IIA~Emgvn~k~tsGp~leK--- 90 (332)
T COG2255 21 RPKTLDEFIGQEKVKEQLQIFIKAAKKR-------GEALDHVLLFGPPGLGKTTLAHIIANELGVNLKITSGPALEK--- 90 (332)
T ss_pred CcccHHHhcChHHHHHHHHHHHHHHHhc-------CCCcCeEEeeCCCCCcHHHHHHHHHHHhcCCeEecccccccC---
Confidence 4567999999999999999999875432 235668999999999999999999999999999998876521
Q ss_pred hcchHHHHHHHHHHHhcCCeEEEEcCcchhhhhcCCcccccchhHHHHHHHHHHHHhcCCCC----------------CC
Q 007575 407 GMGASRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDS----------------NS 470 (597)
Q Consensus 407 G~~e~~vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~eqtLnqLL~emdg~~~----------------~~ 470 (597)
...+-.++.... ..+||||||||.+.+.- -.-|...|+.|.- -.
T Consensus 91 ---~gDlaaiLt~Le--~~DVLFIDEIHrl~~~v---------------EE~LYpaMEDf~lDI~IG~gp~Arsv~ldLp 150 (332)
T COG2255 91 ---PGDLAAILTNLE--EGDVLFIDEIHRLSPAV---------------EEVLYPAMEDFRLDIIIGKGPAARSIRLDLP 150 (332)
T ss_pred ---hhhHHHHHhcCC--cCCeEEEehhhhcChhH---------------HHHhhhhhhheeEEEEEccCCccceEeccCC
Confidence 222333333322 33699999999997542 1334455665521 14
Q ss_pred cEEEEEecCCCCCCChhhhCCCCcceEEEecCCCHHHHHHHHHHHHhcCCCCCCCCCCHHHHHHhCCCCCHHHHHHHHHH
Q 007575 471 AVIVLGATNRSDVLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTTGFTGADLANLVNE 550 (597)
Q Consensus 471 ~VIVIaaTNrpd~LD~aLlRpgRFd~~I~v~~Pd~~eR~eILk~~l~~~~~~l~~dvdl~~LA~~t~G~SgaDL~~Lv~e 550 (597)
++.+|+||.+...|...|+. ||.....+..++.++..+|+.......++.+.++ ...+||+++.| +|+-...|+++
T Consensus 151 pFTLIGATTr~G~lt~PLrd--RFGi~~rlefY~~~eL~~Iv~r~a~~l~i~i~~~-~a~eIA~rSRG-TPRIAnRLLrR 226 (332)
T COG2255 151 PFTLIGATTRAGMLTNPLRD--RFGIIQRLEFYTVEELEEIVKRSAKILGIEIDEE-AALEIARRSRG-TPRIANRLLRR 226 (332)
T ss_pred CeeEeeeccccccccchhHH--hcCCeeeeecCCHHHHHHHHHHHHHHhCCCCChH-HHHHHHHhccC-CcHHHHHHHHH
Confidence 68899999999999999988 9999999999999999999999988777777665 47889999987 78888889999
Q ss_pred HHHHHHhcCCCcccHHHHHHHHHHHh
Q 007575 551 AALLAGRLNKVVVEKIDFIHAVERSI 576 (597)
Q Consensus 551 Aal~A~r~~~~~It~~d~~~Al~~v~ 576 (597)
..-.|.-.+...|+.+-..+|++...
T Consensus 227 VRDfa~V~~~~~I~~~ia~~aL~~L~ 252 (332)
T COG2255 227 VRDFAQVKGDGDIDRDIADKALKMLD 252 (332)
T ss_pred HHHHHHHhcCCcccHHHHHHHHHHhC
Confidence 98888888888898888888877654
No 54
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=99.76 E-value=1.7e-17 Score=175.40 Aligned_cols=209 Identities=30% Similarity=0.413 Sum_probs=145.3
Q ss_pred cCCCCcccccccCChHHHH---HHHHHHHHhcChhHHhhcCCCCCCceEEeCCCCChHHHHHHHHHHhcCCCeeeechhh
Q 007575 324 EQGDTITFADVAGVDEAKE---ELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASE 400 (597)
Q Consensus 324 ~~~~~vtf~dV~G~de~k~---~L~eiv~~l~~p~~~~~lg~~~p~gVLL~GPPGTGKT~LArAIA~el~~pfi~is~se 400 (597)
....+-+++|++|++.... .|..+++ .....+++||||||||||+||+.||+..+.+|..++..
T Consensus 16 ~rmRP~~lde~vGQ~HLlg~~~~lrr~v~------------~~~l~SmIl~GPPG~GKTTlA~liA~~~~~~f~~~sAv- 82 (436)
T COG2256 16 ERLRPKSLDEVVGQEHLLGEGKPLRRAVE------------AGHLHSMILWGPPGTGKTTLARLIAGTTNAAFEALSAV- 82 (436)
T ss_pred HHhCCCCHHHhcChHhhhCCCchHHHHHh------------cCCCceeEEECCCCCCHHHHHHHHHHhhCCceEEeccc-
Confidence 3345678999999998763 3444443 12234799999999999999999999999999999874
Q ss_pred hHHHHhhcchHHHHHHHHHHHhcC----CeEEEEcCcchhhhhcCCcccccchhHHHHHHHHHHHHhcCCCCCCcEEEEE
Q 007575 401 FVELYVGMGASRVRDLFARAKKEA----PSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLG 476 (597)
Q Consensus 401 f~~~~vG~~e~~vr~lF~~A~~~a----P~ILfIDEIDaL~~~r~~~~~~~~~~e~eqtLnqLL~emdg~~~~~~VIVIa 476 (597)
-.+.+.+++++++|+... ..||||||||.+-+..+ ..||-.|+ +..|++|+
T Consensus 83 ------~~gvkdlr~i~e~a~~~~~~gr~tiLflDEIHRfnK~QQ---------------D~lLp~vE----~G~iilIG 137 (436)
T COG2256 83 ------TSGVKDLREIIEEARKNRLLGRRTILFLDEIHRFNKAQQ---------------DALLPHVE----NGTIILIG 137 (436)
T ss_pred ------cccHHHHHHHHHHHHHHHhcCCceEEEEehhhhcChhhh---------------hhhhhhhc----CCeEEEEe
Confidence 346688999999996532 46999999999977654 46788776 56688887
Q ss_pred ec--CCCCCCChhhhCCCCcceEEEecCCCHHHHHHHHHHHHhcCCCCCC------CCCCHHHHHHhCCCCCHHHHHHHH
Q 007575 477 AT--NRSDVLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLA------KDIDLGDIASMTTGFTGADLANLV 548 (597)
Q Consensus 477 aT--Nrpd~LD~aLlRpgRFd~~I~v~~Pd~~eR~eILk~~l~~~~~~l~------~dvdl~~LA~~t~G~SgaDL~~Lv 548 (597)
|| |..-.|.+||++ |. +++.+.+.+.++..++++.-+......+. ++..++.|+..+.| -.+-+-|++
T Consensus 138 ATTENPsF~ln~ALlS--R~-~vf~lk~L~~~di~~~l~ra~~~~~rgl~~~~~~i~~~a~~~l~~~s~G-D~R~aLN~L 213 (436)
T COG2256 138 ATTENPSFELNPALLS--RA-RVFELKPLSSEDIKKLLKRALLDEERGLGGQIIVLDEEALDYLVRLSNG-DARRALNLL 213 (436)
T ss_pred ccCCCCCeeecHHHhh--hh-heeeeecCCHHHHHHHHHHHHhhhhcCCCcccccCCHHHHHHHHHhcCc-hHHHHHHHH
Confidence 77 444789999999 66 37899999999999999984433222222 12236677777765 233333444
Q ss_pred HHHHHHHHhcCCCcccHHHHHHHHHHHh
Q 007575 549 NEAALLAGRLNKVVVEKIDFIHAVERSI 576 (597)
Q Consensus 549 ~eAal~A~r~~~~~It~~d~~~Al~~v~ 576 (597)
..+...+ +.+. .++.+++++.+.+..
T Consensus 214 E~~~~~~-~~~~-~~~~~~l~~~l~~~~ 239 (436)
T COG2256 214 ELAALSA-EPDE-VLILELLEEILQRRS 239 (436)
T ss_pred HHHHHhc-CCCc-ccCHHHHHHHHhhhh
Confidence 4444333 2222 333666666665543
No 55
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=99.76 E-value=1.7e-17 Score=193.53 Aligned_cols=164 Identities=28% Similarity=0.392 Sum_probs=126.4
Q ss_pred ccccCChHHHHHHHHHHHHhcChhHHhhcCCCCCCceEEeCCCCChHHHHHHHHHHhcCCCeeeechhhhH---------
Q 007575 332 ADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFV--------- 402 (597)
Q Consensus 332 ~dV~G~de~k~~L~eiv~~l~~p~~~~~lg~~~p~gVLL~GPPGTGKT~LArAIA~el~~pfi~is~sef~--------- 402 (597)
+++.|++++|+.+.+.+...... +...+..+||+||||||||++|+++|++++.+|+.+++..+.
T Consensus 320 ~~~~G~~~~k~~i~~~~~~~~~~------~~~~~~~lll~GppG~GKT~lAk~iA~~l~~~~~~i~~~~~~~~~~i~g~~ 393 (775)
T TIGR00763 320 EDHYGLKKVKERILEYLAVQKLR------GKMKGPILCLVGPPGVGKTSLGKSIAKALNRKFVRFSLGGVRDEAEIRGHR 393 (775)
T ss_pred hhcCChHHHHHHHHHHHHHHHhh------cCCCCceEEEECCCCCCHHHHHHHHHHHhcCCeEEEeCCCcccHHHHcCCC
Confidence 35899999999999877643211 112234799999999999999999999999999998765432
Q ss_pred HHHhhcchHHHHHHHHHHHhcCCeEEEEcCcchhhhhcCCcccccchhHHHHHHHHHHHHhcC-----CC--------CC
Q 007575 403 ELYVGMGASRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDG-----FD--------SN 469 (597)
Q Consensus 403 ~~~vG~~e~~vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~eqtLnqLL~emdg-----~~--------~~ 469 (597)
..|+|.....+.+.|..+....| ||||||||.+.+..++. ..+.|+..||. |. ..
T Consensus 394 ~~~~g~~~g~i~~~l~~~~~~~~-villDEidk~~~~~~~~-----------~~~aLl~~ld~~~~~~f~d~~~~~~~d~ 461 (775)
T TIGR00763 394 RTYVGAMPGRIIQGLKKAKTKNP-LFLLDEIDKIGSSFRGD-----------PASALLEVLDPEQNNAFSDHYLDVPFDL 461 (775)
T ss_pred CceeCCCCchHHHHHHHhCcCCC-EEEEechhhcCCccCCC-----------HHHHHHHhcCHHhcCccccccCCceecc
Confidence 24667777788888888877767 89999999998643211 12455555542 11 12
Q ss_pred CcEEEEEecCCCCCCChhhhCCCCcceEEEecCCCHHHHHHHHHHHH
Q 007575 470 SAVIVLGATNRSDVLDPALRRPGRFDRVVMVETPDKIGREAILKVHV 516 (597)
Q Consensus 470 ~~VIVIaaTNrpd~LD~aLlRpgRFd~~I~v~~Pd~~eR~eILk~~l 516 (597)
.++++|+|||..+.++++|++ ||+ .|.++.|+.+++.+|++.++
T Consensus 462 s~v~~I~TtN~~~~i~~~L~~--R~~-vi~~~~~~~~e~~~I~~~~l 505 (775)
T TIGR00763 462 SKVIFIATANSIDTIPRPLLD--RME-VIELSGYTEEEKLEIAKKYL 505 (775)
T ss_pred CCEEEEEecCCchhCCHHHhC--Cee-EEecCCCCHHHHHHHHHHHH
Confidence 578999999999999999999 995 78999999999999998876
No 56
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=99.75 E-value=2.7e-17 Score=180.88 Aligned_cols=225 Identities=20% Similarity=0.272 Sum_probs=152.0
Q ss_pred CCCcccccccCChHHHHHHHHHHHHhcChhHHhhcCCCCCCceEEeCCCCChHHHHHHHHHHhc-----CCCeeeechhh
Q 007575 326 GDTITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEA-----EVPFISCSASE 400 (597)
Q Consensus 326 ~~~vtf~dV~G~de~k~~L~eiv~~l~~p~~~~~lg~~~p~gVLL~GPPGTGKT~LArAIA~el-----~~pfi~is~se 400 (597)
.+..+|++.+..+.....+..+......+ + ....+++||||||||||+|+++++.++ +..++++++.+
T Consensus 116 ~~~~tfd~fv~g~~n~~a~~~~~~~~~~~------~-~~~~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~v~yi~~~~ 188 (450)
T PRK00149 116 NPKYTFDNFVVGKSNRLAHAAALAVAENP------G-KAYNPLFIYGGVGLGKTHLLHAIGNYILEKNPNAKVVYVTSEK 188 (450)
T ss_pred CCCCcccccccCCCcHHHHHHHHHHHhCc------C-ccCCeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEEEHHH
Confidence 46789999654444433333333333332 1 223469999999999999999999987 56788999998
Q ss_pred hHHHHhhcchHHHHHHHHHHHhcCCeEEEEcCcchhhhhcCCcccccchhHHHHHHHHHHHHhcCCCCCCcEEEEEecCC
Q 007575 401 FVELYVGMGASRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATNR 480 (597)
Q Consensus 401 f~~~~vG~~e~~vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~eqtLnqLL~emdg~~~~~~VIVIaaTNr 480 (597)
|...+.........+-|..... .+++|+|||||.+..+.. +...|+..++........+||+++..
T Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~-~~dlLiiDDi~~l~~~~~-------------~~~~l~~~~n~l~~~~~~iiits~~~ 254 (450)
T PRK00149 189 FTNDFVNALRNNTMEEFKEKYR-SVDVLLIDDIQFLAGKER-------------TQEEFFHTFNALHEAGKQIVLTSDRP 254 (450)
T ss_pred HHHHHHHHHHcCcHHHHHHHHh-cCCEEEEehhhhhcCCHH-------------HHHHHHHHHHHHHHCCCcEEEECCCC
Confidence 8776654432222223333222 467999999999854321 11223333332222334466666666
Q ss_pred CCC---CChhhhCCCCcc--eEEEecCCCHHHHHHHHHHHHhcCCCCCCCCCCHHHHHHhCCCCCHHHHHHHHHHHHHHH
Q 007575 481 SDV---LDPALRRPGRFD--RVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTTGFTGADLANLVNEAALLA 555 (597)
Q Consensus 481 pd~---LD~aLlRpgRFd--~~I~v~~Pd~~eR~eILk~~l~~~~~~l~~dvdl~~LA~~t~G~SgaDL~~Lv~eAal~A 555 (597)
|.. ++++|.+ ||. ..+.+.+|+.++|.+|++..+...++.+.+++ ++.||....| +.++|..+++.....|
T Consensus 255 p~~l~~l~~~l~S--Rl~~gl~v~i~~pd~~~r~~il~~~~~~~~~~l~~e~-l~~ia~~~~~-~~R~l~~~l~~l~~~~ 330 (450)
T PRK00149 255 PKELPGLEERLRS--RFEWGLTVDIEPPDLETRIAILKKKAEEEGIDLPDEV-LEFIAKNITS-NVRELEGALNRLIAYA 330 (450)
T ss_pred HHHHHHHHHHHHh--HhcCCeeEEecCCCHHHHHHHHHHHHHHcCCCCCHHH-HHHHHcCcCC-CHHHHHHHHHHHHHHH
Confidence 654 6788888 885 58999999999999999999987777777775 8899988875 7899999999887776
Q ss_pred HhcCCCcccHHHHHHHHHHHh
Q 007575 556 GRLNKVVVEKIDFIHAVERSI 576 (597)
Q Consensus 556 ~r~~~~~It~~d~~~Al~~v~ 576 (597)
...+ ..||.+.+++++...+
T Consensus 331 ~~~~-~~it~~~~~~~l~~~~ 350 (450)
T PRK00149 331 SLTG-KPITLELAKEALKDLL 350 (450)
T ss_pred HhhC-CCCCHHHHHHHHHHhh
Confidence 5544 3467777777766653
No 57
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=99.75 E-value=4e-17 Score=188.72 Aligned_cols=225 Identities=20% Similarity=0.271 Sum_probs=160.2
Q ss_pred cccccccCChHHHHHHHHHHHHhcChhHHhhcCCCCCCceEEeCCCCChHHHHHHHHHHhc----------CCCeeeech
Q 007575 329 ITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEA----------EVPFISCSA 398 (597)
Q Consensus 329 vtf~dV~G~de~k~~L~eiv~~l~~p~~~~~lg~~~p~gVLL~GPPGTGKT~LArAIA~el----------~~pfi~is~ 398 (597)
-.++.++|.++..+.+.+++.. +.+.++||+||||||||++|+++|... +..++.++.
T Consensus 183 g~~~~liGR~~ei~~~i~iL~r------------~~~~n~LLvGppGvGKT~lae~la~~i~~~~vP~~l~~~~~~~l~~ 250 (758)
T PRK11034 183 GGIDPLIGREKELERAIQVLCR------------RRKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSLDI 250 (758)
T ss_pred CCCCcCcCCCHHHHHHHHHHhc------------cCCCCeEEECCCCCCHHHHHHHHHHHHHhcCCCchhcCCeEEeccH
Confidence 3466799999887776665542 234578999999999999999999864 455666666
Q ss_pred hhhH--HHHhhcchHHHHHHHHHHHhcCCeEEEEcCcchhhhhcCCcccccchhHHHHHHHHHHHHhcCCCCCCcEEEEE
Q 007575 399 SEFV--ELYVGMGASRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLG 476 (597)
Q Consensus 399 sef~--~~~vG~~e~~vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~eqtLnqLL~emdg~~~~~~VIVIa 476 (597)
..++ ..|.|+.+.+++.+|+.+....++||||||||.|...+... ++... ..|.|...+. ...+.||+
T Consensus 251 ~~llaG~~~~Ge~e~rl~~l~~~l~~~~~~ILfIDEIh~L~g~g~~~---~g~~d---~~nlLkp~L~----~g~i~vIg 320 (758)
T PRK11034 251 GSLLAGTKYRGDFEKRFKALLKQLEQDTNSILFIDEIHTIIGAGAAS---GGQVD---AANLIKPLLS----SGKIRVIG 320 (758)
T ss_pred HHHhcccchhhhHHHHHHHHHHHHHhcCCCEEEeccHHHHhccCCCC---CcHHH---HHHHHHHHHh----CCCeEEEe
Confidence 6665 45788899999999999988889999999999998654321 11112 2233333332 46799999
Q ss_pred ecCCCC-----CCChhhhCCCCcceEEEecCCCHHHHHHHHHHHHhcC----CCCCCCCCCHHHHHHhC-----CCCCHH
Q 007575 477 ATNRSD-----VLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKK----ELPLAKDIDLGDIASMT-----TGFTGA 542 (597)
Q Consensus 477 aTNrpd-----~LD~aLlRpgRFd~~I~v~~Pd~~eR~eILk~~l~~~----~~~l~~dvdl~~LA~~t-----~G~Sga 542 (597)
+|+.++ ..|++|.| ||+ .|.++.|+.+++.+||+.+..+. ++.+.++ .+...+..+ ..+-|.
T Consensus 321 ATt~~E~~~~~~~D~AL~r--RFq-~I~v~ePs~~~~~~IL~~~~~~ye~~h~v~i~~~-al~~a~~ls~ryi~~r~lPd 396 (758)
T PRK11034 321 STTYQEFSNIFEKDRALAR--RFQ-KIDITEPSIEETVQIINGLKPKYEAHHDVRYTAK-AVRAAVELAVKYINDRHLPD 396 (758)
T ss_pred cCChHHHHHHhhccHHHHh--hCc-EEEeCCCCHHHHHHHHHHHHHHhhhccCCCcCHH-HHHHHHHHhhccccCccChH
Confidence 999875 57999999 997 79999999999999999876543 2222222 133333322 345667
Q ss_pred HHHHHHHHHHHHHH----hcCCCcccHHHHHHHHHHHhccc
Q 007575 543 DLANLVNEAALLAG----RLNKVVVEKIDFIHAVERSIAVS 579 (597)
Q Consensus 543 DL~~Lv~eAal~A~----r~~~~~It~~d~~~Al~~v~~g~ 579 (597)
....++++|+.... ...+..|+.+|+.+.+.+...-+
T Consensus 397 Kaidlldea~a~~~~~~~~~~~~~v~~~~i~~v~~~~tgip 437 (758)
T PRK11034 397 KAIDVIDEAGARARLMPVSKRKKTVNVADIESVVARIARIP 437 (758)
T ss_pred HHHHHHHHHHHhhccCcccccccccChhhHHHHHHHHhCCC
Confidence 88999999986442 22345688999999888765544
No 58
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=99.74 E-value=6.8e-17 Score=175.31 Aligned_cols=222 Identities=21% Similarity=0.301 Sum_probs=145.4
Q ss_pred CCCcccccc-cCChHHHHHHHHHHHHhcChhHHhhcCCCCCCceEEeCCCCChHHHHHHHHHHhc-----CCCeeeechh
Q 007575 326 GDTITFADV-AGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEA-----EVPFISCSAS 399 (597)
Q Consensus 326 ~~~vtf~dV-~G~de~k~~L~eiv~~l~~p~~~~~lg~~~p~gVLL~GPPGTGKT~LArAIA~el-----~~pfi~is~s 399 (597)
.+..+|++. +|.+ .......+......+ .....+++||||||||||+|++++++++ +..++++++.
T Consensus 104 ~~~~tfd~fi~g~~-n~~a~~~~~~~~~~~-------~~~~n~l~l~G~~G~GKThL~~ai~~~l~~~~~~~~v~yi~~~ 175 (405)
T TIGR00362 104 NPKYTFDNFVVGKS-NRLAHAAALAVAENP-------GKAYNPLFIYGGVGLGKTHLLHAIGNEILENNPNAKVVYVSSE 175 (405)
T ss_pred CCCCcccccccCCc-HHHHHHHHHHHHhCc-------CccCCeEEEECCCCCcHHHHHHHHHHHHHHhCCCCcEEEEEHH
Confidence 356889994 4533 332333333333332 1234569999999999999999999876 6788999999
Q ss_pred hhHHHHhhcchH-HHHHHHHHHHhcCCeEEEEcCcchhhhhcCCcccccchhHHHHHHHHHHHHhcCCCCCCcEEEEEec
Q 007575 400 EFVELYVGMGAS-RVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGAT 478 (597)
Q Consensus 400 ef~~~~vG~~e~-~vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~eqtLnqLL~emdg~~~~~~VIVIaaT 478 (597)
+|...+...... ....+.+..+ .+.+|+|||+|.+..+.. +...|+..++........+||+++
T Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~--~~dlLiiDDi~~l~~~~~-------------~~~~l~~~~n~~~~~~~~iiits~ 240 (405)
T TIGR00362 176 KFTNDFVNALRNNKMEEFKEKYR--SVDLLLIDDIQFLAGKER-------------TQEEFFHTFNALHENGKQIVLTSD 240 (405)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHH--hCCEEEEehhhhhcCCHH-------------HHHHHHHHHHHHHHCCCCEEEecC
Confidence 887665433211 1222222222 356999999999864321 112233333222223344666666
Q ss_pred CCCCC---CChhhhCCCCcc--eEEEecCCCHHHHHHHHHHHHhcCCCCCCCCCCHHHHHHhCCCCCHHHHHHHHHHHHH
Q 007575 479 NRSDV---LDPALRRPGRFD--RVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTTGFTGADLANLVNEAAL 553 (597)
Q Consensus 479 Nrpd~---LD~aLlRpgRFd--~~I~v~~Pd~~eR~eILk~~l~~~~~~l~~dvdl~~LA~~t~G~SgaDL~~Lv~eAal 553 (597)
..|.. +++.+.+ ||. ..+.+++||.++|.+|++..+...++.+.+++ ++.||.+..+ +.++|..+++....
T Consensus 241 ~~p~~l~~l~~~l~S--Rl~~g~~v~i~~pd~~~r~~il~~~~~~~~~~l~~e~-l~~ia~~~~~-~~r~l~~~l~~l~~ 316 (405)
T TIGR00362 241 RPPKELPGLEERLRS--RFEWGLVVDIEPPDLETRLAILQKKAEEEGLELPDEV-LEFIAKNIRS-NVRELEGALNRLLA 316 (405)
T ss_pred CCHHHHhhhhhhhhh--hccCCeEEEeCCCCHHHHHHHHHHHHHHcCCCCCHHH-HHHHHHhcCC-CHHHHHHHHHHHHH
Confidence 66644 5688887 885 57999999999999999999988888887664 8899988875 78899999888776
Q ss_pred HHHhcCCCcccHHHHHHHHHHH
Q 007575 554 LAGRLNKVVVEKIDFIHAVERS 575 (597)
Q Consensus 554 ~A~r~~~~~It~~d~~~Al~~v 575 (597)
.|...+ ..||.+.+++++...
T Consensus 317 ~a~~~~-~~it~~~~~~~L~~~ 337 (405)
T TIGR00362 317 YASLTG-KPITLELAKEALKDL 337 (405)
T ss_pred HHHHhC-CCCCHHHHHHHHHHh
Confidence 665433 335555555555544
No 59
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.74 E-value=9.2e-17 Score=176.03 Aligned_cols=211 Identities=18% Similarity=0.231 Sum_probs=153.7
Q ss_pred cCCCCcccccccCChHHHHHHHHHHHHhcChhHHhhcCCCCCCceEEeCCCCChHHHHHHHHHHhcCCCe-------eee
Q 007575 324 EQGDTITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPF-------ISC 396 (597)
Q Consensus 324 ~~~~~vtf~dV~G~de~k~~L~eiv~~l~~p~~~~~lg~~~p~gVLL~GPPGTGKT~LArAIA~el~~pf-------i~i 396 (597)
....+.+|+||+|++.+...|...+.. .+.+..+||+||||||||++|+++|..+++.- ..+
T Consensus 10 ~KyRP~~f~dvVGQe~iv~~L~~~i~~-----------~ri~ha~Lf~GP~GtGKTTlAriLAk~Lnce~~~~~~pCg~C 78 (484)
T PRK14956 10 RKYRPQFFRDVIHQDLAIGALQNALKS-----------GKIGHAYIFFGPRGVGKTTIARILAKRLNCENPIGNEPCNEC 78 (484)
T ss_pred HHhCCCCHHHHhChHHHHHHHHHHHHc-----------CCCCeEEEEECCCCCCHHHHHHHHHHhcCcccccCccccCCC
Confidence 344567899999999999988887762 23456799999999999999999999987531 111
Q ss_pred -chhhhH--------HH--HhhcchHHHHHHHHHHH----hcCCeEEEEcCcchhhhhcCCcccccchhHHHHHHHHHHH
Q 007575 397 -SASEFV--------EL--YVGMGASRVRDLFARAK----KEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLT 461 (597)
Q Consensus 397 -s~sef~--------~~--~vG~~e~~vr~lF~~A~----~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~eqtLnqLL~ 461 (597)
+|.++. +. ....+...+|++.+.+. .+...|+||||+|.+.. ...|.||.
T Consensus 79 ~sC~~i~~g~~~dviEIdaas~~gVd~IReL~e~l~~~p~~g~~KV~IIDEah~Ls~---------------~A~NALLK 143 (484)
T PRK14956 79 TSCLEITKGISSDVLEIDAASNRGIENIRELRDNVKFAPMGGKYKVYIIDEVHMLTD---------------QSFNALLK 143 (484)
T ss_pred cHHHHHHccCCccceeechhhcccHHHHHHHHHHHHhhhhcCCCEEEEEechhhcCH---------------HHHHHHHH
Confidence 111111 10 01123445666665554 23456999999999853 35688999
Q ss_pred HhcCCCCCCcEEEEEecCCCCCCChhhhCCCCcceEEEecCCCHHHHHHHHHHHHhcCCCCCCCCCCHHHHHHhCCCCCH
Q 007575 462 EMDGFDSNSAVIVLGATNRSDVLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTTGFTG 541 (597)
Q Consensus 462 emdg~~~~~~VIVIaaTNrpd~LD~aLlRpgRFd~~I~v~~Pd~~eR~eILk~~l~~~~~~l~~dvdl~~LA~~t~G~Sg 541 (597)
.|+. +...+++|.+|+.++.|.+++++ |+. ++.|.+++.++..+.++..+...++.+.++ .+..|++...| +.
T Consensus 144 tLEE--Pp~~viFILaTte~~kI~~TI~S--RCq-~~~f~~ls~~~i~~~L~~i~~~Egi~~e~e-AL~~Ia~~S~G-d~ 216 (484)
T PRK14956 144 TLEE--PPAHIVFILATTEFHKIPETILS--RCQ-DFIFKKVPLSVLQDYSEKLCKIENVQYDQE-GLFWIAKKGDG-SV 216 (484)
T ss_pred Hhhc--CCCceEEEeecCChhhccHHHHh--hhh-eeeecCCCHHHHHHHHHHHHHHcCCCCCHH-HHHHHHHHcCC-hH
Confidence 9974 45678888999999999999999 875 789999999999999999988777776655 48889988886 78
Q ss_pred HHHHHHHHHHHHHHHhcCCCcccHHHHHHH
Q 007575 542 ADLANLVNEAALLAGRLNKVVVEKIDFIHA 571 (597)
Q Consensus 542 aDL~~Lv~eAal~A~r~~~~~It~~d~~~A 571 (597)
++..++++.+...+ ...|+.+++.+.
T Consensus 217 RdAL~lLeq~i~~~----~~~it~~~V~~~ 242 (484)
T PRK14956 217 RDMLSFMEQAIVFT----DSKLTGVKIRKM 242 (484)
T ss_pred HHHHHHHHHHHHhC----CCCcCHHHHHHH
Confidence 88888888766432 224777666543
No 60
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=99.73 E-value=2.2e-16 Score=168.04 Aligned_cols=244 Identities=23% Similarity=0.238 Sum_probs=162.8
Q ss_pred CcccccccCChHHHHHHHHHHHHhcChhHHhhcCCCCCCceEEeCCCCChHHHHHHHHHHhcC---------CCeeeech
Q 007575 328 TITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAE---------VPFISCSA 398 (597)
Q Consensus 328 ~vtf~dV~G~de~k~~L~eiv~~l~~p~~~~~lg~~~p~gVLL~GPPGTGKT~LArAIA~el~---------~pfi~is~ 398 (597)
....++++|.++..++|...+..... ...+.+++|+||||||||+++++++.++. +++++++|
T Consensus 11 ~~~p~~l~gRe~e~~~l~~~l~~~~~--------~~~~~~i~I~G~~GtGKT~l~~~~~~~l~~~~~~~~~~~~~v~in~ 82 (365)
T TIGR02928 11 DYVPDRIVHRDEQIEELAKALRPILR--------GSRPSNVFIYGKTGTGKTAVTKYVMKELEEAAEDRDVRVVTVYVNC 82 (365)
T ss_pred CCCCCCCCCcHHHHHHHHHHHHHHHc--------CCCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhccCCceEEEEEEC
Confidence 44556899999998888887764221 13456799999999999999999987652 56788887
Q ss_pred hhhHH----------HHh--hc-------c-hHHHHHHHHHHH-hcCCeEEEEcCcchhhhhcCCcccccchhHHHHHHH
Q 007575 399 SEFVE----------LYV--GM-------G-ASRVRDLFARAK-KEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLN 457 (597)
Q Consensus 399 sef~~----------~~v--G~-------~-e~~vr~lF~~A~-~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~eqtLn 457 (597)
....+ ... |. + .+....+++... ...+.||+|||+|.+.... ...+.
T Consensus 83 ~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlvIDE~d~L~~~~------------~~~L~ 150 (365)
T TIGR02928 83 QILDTLYQVLVELANQLRGSGEEVPTTGLSTSEVFRRLYKELNERGDSLIIVLDEIDYLVGDD------------DDLLY 150 (365)
T ss_pred CCCCCHHHHHHHHHHHHhhcCCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEECchhhhccCC------------cHHHH
Confidence 54321 111 11 1 122344454443 3457799999999997221 12445
Q ss_pred HHHHHhcC-CCCCCcEEEEEecCCCC---CCChhhhCCCCcc-eEEEecCCCHHHHHHHHHHHHhcC--CCCCCCCCCHH
Q 007575 458 QLLTEMDG-FDSNSAVIVLGATNRSD---VLDPALRRPGRFD-RVVMVETPDKIGREAILKVHVSKK--ELPLAKDIDLG 530 (597)
Q Consensus 458 qLL~emdg-~~~~~~VIVIaaTNrpd---~LD~aLlRpgRFd-~~I~v~~Pd~~eR~eILk~~l~~~--~~~l~~dvdl~ 530 (597)
+|+...+. ...+.++.+|+++|.++ .+++.+.+ ||. ..+.+++++.++..+|++.++... ...+.+++ ++
T Consensus 151 ~l~~~~~~~~~~~~~v~lI~i~n~~~~~~~l~~~~~s--~~~~~~i~f~p~~~~e~~~il~~r~~~~~~~~~~~~~~-l~ 227 (365)
T TIGR02928 151 QLSRARSNGDLDNAKVGVIGISNDLKFRENLDPRVKS--SLCEEEIIFPPYDAEELRDILENRAEKAFYDGVLDDGV-IP 227 (365)
T ss_pred hHhccccccCCCCCeEEEEEEECCcchHhhcCHHHhc--cCCcceeeeCCCCHHHHHHHHHHHHHhhccCCCCChhH-HH
Confidence 55544211 12236788999999885 57888877 774 679999999999999999998621 11223322 33
Q ss_pred HHH---HhCCCCCHHHHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHhcccc-ccccccchhhhhhcc
Q 007575 531 DIA---SMTTGFTGADLANLVNEAALLAGRLNKVVVEKIDFIHAVERSIAVSL-SLSLSLSLQASISLN 595 (597)
Q Consensus 531 ~LA---~~t~G~SgaDL~~Lv~eAal~A~r~~~~~It~~d~~~Al~~v~~g~~-k~s~~ls~q~~l~l~ 595 (597)
.++ ..+.| ..+.+.++|..|+..|..++...|+.+|+..|++....... +.-..++.++.+++.
T Consensus 228 ~i~~~~~~~~G-d~R~al~~l~~a~~~a~~~~~~~it~~~v~~a~~~~~~~~~~~~i~~l~~~~~~~l~ 295 (365)
T TIGR02928 228 LCAALAAQEHG-DARKAIDLLRVAGEIAEREGAERVTEDHVEKAQEKIEKDRLLELIRGLPTHSKLVLL 295 (365)
T ss_pred HHHHHHHHhcC-CHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 443 34444 46677889999999999888889999999999888743332 222456666665553
No 61
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.73 E-value=1.5e-16 Score=175.68 Aligned_cols=205 Identities=19% Similarity=0.236 Sum_probs=148.9
Q ss_pred CCCcccccccCChHHHHHHHHHHHHhcChhHHhhcCCCCCCceEEeCCCCChHHHHHHHHHHhcCC--------------
Q 007575 326 GDTITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEV-------------- 391 (597)
Q Consensus 326 ~~~vtf~dV~G~de~k~~L~eiv~~l~~p~~~~~lg~~~p~gVLL~GPPGTGKT~LArAIA~el~~-------------- 391 (597)
..+.+|+|++|++++++.|...+.. .+.|.++||+||||||||++|+++|+.+++
T Consensus 8 yRP~~~~divGq~~i~~~L~~~i~~-----------~~l~~~~Lf~GPpGtGKTTlA~~lA~~l~~~~~~~~~pc~~c~~ 76 (472)
T PRK14962 8 YRPKTFSEVVGQDHVKKLIINALKK-----------NSISHAYIFAGPRGTGKTTVARILAKSLNCENRKGVEPCNECRA 76 (472)
T ss_pred HCCCCHHHccCcHHHHHHHHHHHHc-----------CCCCeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCCCcccHH
Confidence 3567899999999998888877652 235667999999999999999999998764
Q ss_pred ----------CeeeechhhhHHHHhhcchHHHHHHHHHHHh----cCCeEEEEcCcchhhhhcCCcccccchhHHHHHHH
Q 007575 392 ----------PFISCSASEFVELYVGMGASRVRDLFARAKK----EAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLN 457 (597)
Q Consensus 392 ----------pfi~is~sef~~~~vG~~e~~vr~lF~~A~~----~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~eqtLn 457 (597)
.++.++++. ..+...+|.+.+.+.. ....||||||+|.+.. ..++
T Consensus 77 c~~i~~g~~~dv~el~aa~------~~gid~iR~i~~~~~~~p~~~~~kVvIIDE~h~Lt~---------------~a~~ 135 (472)
T PRK14962 77 CRSIDEGTFMDVIELDAAS------NRGIDEIRKIRDAVGYRPMEGKYKVYIIDEVHMLTK---------------EAFN 135 (472)
T ss_pred HHHHhcCCCCccEEEeCcc------cCCHHHHHHHHHHHhhChhcCCeEEEEEEChHHhHH---------------HHHH
Confidence 233333211 1223456666655542 2346999999999853 2347
Q ss_pred HHHHHhcCCCCCCcEEEEEecCCCCCCChhhhCCCCcceEEEecCCCHHHHHHHHHHHHhcCCCCCCCCCCHHHHHHhCC
Q 007575 458 QLLTEMDGFDSNSAVIVLGATNRSDVLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTT 537 (597)
Q Consensus 458 qLL~emdg~~~~~~VIVIaaTNrpd~LD~aLlRpgRFd~~I~v~~Pd~~eR~eILk~~l~~~~~~l~~dvdl~~LA~~t~ 537 (597)
.|+..|+.. ...+++|++|+.++.+++++.+ |+. .+.+.+++.++...+++..+...++.+.++ .++.|+..+.
T Consensus 136 ~LLk~LE~p--~~~vv~Ilattn~~kl~~~L~S--R~~-vv~f~~l~~~el~~~L~~i~~~egi~i~~e-al~~Ia~~s~ 209 (472)
T PRK14962 136 ALLKTLEEP--PSHVVFVLATTNLEKVPPTIIS--RCQ-VIEFRNISDELIIKRLQEVAEAEGIEIDRE-ALSFIAKRAS 209 (472)
T ss_pred HHHHHHHhC--CCcEEEEEEeCChHhhhHHHhc--CcE-EEEECCccHHHHHHHHHHHHHHcCCCCCHH-HHHHHHHHhC
Confidence 788888743 3457777777778899999998 874 899999999999999999988777777665 4888888876
Q ss_pred CCCHHHHHHHHHHHHHHHHhcCCCcccHHHHHHHHH
Q 007575 538 GFTGADLANLVNEAALLAGRLNKVVVEKIDFIHAVE 573 (597)
Q Consensus 538 G~SgaDL~~Lv~eAal~A~r~~~~~It~~d~~~Al~ 573 (597)
| +.+++.+.+..+...+ + ..|+.+++.+++.
T Consensus 210 G-dlR~aln~Le~l~~~~---~-~~It~e~V~~~l~ 240 (472)
T PRK14962 210 G-GLRDALTMLEQVWKFS---E-GKITLETVHEALG 240 (472)
T ss_pred C-CHHHHHHHHHHHHHhc---C-CCCCHHHHHHHHc
Confidence 5 5666666666554332 2 2489988887764
No 62
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=99.73 E-value=2.1e-16 Score=169.98 Aligned_cols=245 Identities=22% Similarity=0.238 Sum_probs=165.5
Q ss_pred CcccccccCChHHHHHHHHHHHHhcChhHHhhcCCCCCCceEEeCCCCChHHHHHHHHHHhc-----CCCeeeechhhh-
Q 007575 328 TITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEA-----EVPFISCSASEF- 401 (597)
Q Consensus 328 ~vtf~dV~G~de~k~~L~eiv~~l~~p~~~~~lg~~~p~gVLL~GPPGTGKT~LArAIA~el-----~~pfi~is~sef- 401 (597)
....+.++|.++..++|...+..... ...+.+++|+||||||||++++.+++++ ++.+++++|...
T Consensus 26 ~~~P~~l~~Re~e~~~l~~~l~~~~~--------~~~~~~~lI~G~~GtGKT~l~~~v~~~l~~~~~~~~~v~in~~~~~ 97 (394)
T PRK00411 26 DYVPENLPHREEQIEELAFALRPALR--------GSRPLNVLIYGPPGTGKTTTVKKVFEELEEIAVKVVYVYINCQIDR 97 (394)
T ss_pred CCcCCCCCCHHHHHHHHHHHHHHHhC--------CCCCCeEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEECCcCC
Confidence 34556789999988888877753211 1235579999999999999999999876 578888888533
Q ss_pred ---------HHHHhhc-------chH-HHHHHHHHHH-hcCCeEEEEcCcchhhhhcCCcccccchhHHHHHHHHHHHHh
Q 007575 402 ---------VELYVGM-------GAS-RVRDLFARAK-KEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEM 463 (597)
Q Consensus 402 ---------~~~~vG~-------~e~-~vr~lF~~A~-~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~eqtLnqLL~em 463 (597)
.....+. ..+ ....+.+... ...+.||+|||+|.+....+ ...+..|+..+
T Consensus 98 ~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~viviDE~d~l~~~~~-----------~~~l~~l~~~~ 166 (394)
T PRK00411 98 TRYAIFSEIARQLFGHPPPSSGLSFDELFDKIAEYLDERDRVLIVALDDINYLFEKEG-----------NDVLYSLLRAH 166 (394)
T ss_pred CHHHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHHHhcCCEEEEEECCHhHhhccCC-----------chHHHHHHHhh
Confidence 1112120 111 2222233322 24568999999999972211 23566777666
Q ss_pred cCCCCCCcEEEEEecCCC---CCCChhhhCCCCc-ceEEEecCCCHHHHHHHHHHHHhcC--CCCCCCCCCHHHHHHhCC
Q 007575 464 DGFDSNSAVIVLGATNRS---DVLDPALRRPGRF-DRVVMVETPDKIGREAILKVHVSKK--ELPLAKDIDLGDIASMTT 537 (597)
Q Consensus 464 dg~~~~~~VIVIaaTNrp---d~LD~aLlRpgRF-d~~I~v~~Pd~~eR~eILk~~l~~~--~~~l~~dvdl~~LA~~t~ 537 (597)
+.... .++.+|+++|.. +.+++.+.+ || ...+.+++++.++..+|++.++... ...+.++ .++.+++.+.
T Consensus 167 ~~~~~-~~v~vI~i~~~~~~~~~l~~~~~s--~~~~~~i~f~py~~~e~~~il~~r~~~~~~~~~~~~~-~l~~i~~~~~ 242 (394)
T PRK00411 167 EEYPG-ARIGVIGISSDLTFLYILDPRVKS--VFRPEEIYFPPYTADEIFDILKDRVEEGFYPGVVDDE-VLDLIADLTA 242 (394)
T ss_pred hccCC-CeEEEEEEECCcchhhhcCHHHHh--cCCcceeecCCCCHHHHHHHHHHHHHhhcccCCCCHh-HHHHHHHHHH
Confidence 65433 368888888876 356788776 55 3578999999999999999988642 1123333 3677777774
Q ss_pred CC--CHHHHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHhcccccc-ccccchhhhhhcc
Q 007575 538 GF--TGADLANLVNEAALLAGRLNKVVVEKIDFIHAVERSIAVSLSL-SLSLSLQASISLN 595 (597)
Q Consensus 538 G~--SgaDL~~Lv~eAal~A~r~~~~~It~~d~~~Al~~v~~g~~k~-s~~ls~q~~l~l~ 595 (597)
+. ..+.+.++|..|+..|..++...|+.+|+..|++++....... -..++.++.++|.
T Consensus 243 ~~~Gd~r~a~~ll~~a~~~a~~~~~~~I~~~~v~~a~~~~~~~~~~~~~~~L~~~~k~~L~ 303 (394)
T PRK00411 243 REHGDARVAIDLLRRAGLIAEREGSRKVTEEDVRKAYEKSEIVHLSEVLRTLPLHEKLLLR 303 (394)
T ss_pred HhcCcHHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHH
Confidence 32 3456678899999999988999999999999999885443222 2456777666654
No 63
>PRK04195 replication factor C large subunit; Provisional
Probab=99.72 E-value=2.8e-16 Score=174.34 Aligned_cols=207 Identities=24% Similarity=0.290 Sum_probs=149.5
Q ss_pred CCCcccccccCChHHHHHHHHHHHHhcChhHHhhcCCCCCCceEEeCCCCChHHHHHHHHHHhcCCCeeeechhhhHHHH
Q 007575 326 GDTITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFVELY 405 (597)
Q Consensus 326 ~~~vtf~dV~G~de~k~~L~eiv~~l~~p~~~~~lg~~~p~gVLL~GPPGTGKT~LArAIA~el~~pfi~is~sef~~~~ 405 (597)
..+.+|+|++|++++++.|.+.+....+ ..+++++||+||||||||++|+++|++++.+++.+++++...
T Consensus 8 yrP~~l~dlvg~~~~~~~l~~~l~~~~~--------g~~~~~lLL~GppG~GKTtla~ala~el~~~~ielnasd~r~-- 77 (482)
T PRK04195 8 YRPKTLSDVVGNEKAKEQLREWIESWLK--------GKPKKALLLYGPPGVGKTSLAHALANDYGWEVIELNASDQRT-- 77 (482)
T ss_pred cCCCCHHHhcCCHHHHHHHHHHHHHHhc--------CCCCCeEEEECCCCCCHHHHHHHHHHHcCCCEEEEccccccc--
Confidence 3567899999999999999998865432 234778999999999999999999999999999999886532
Q ss_pred hhcchHHHHHHHHHHHh------cCCeEEEEcCcchhhhhcCCcccccchhHHHHHHHHHHHHhcCCCCCCcEEEEEecC
Q 007575 406 VGMGASRVRDLFARAKK------EAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATN 479 (597)
Q Consensus 406 vG~~e~~vr~lF~~A~~------~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~eqtLnqLL~emdg~~~~~~VIVIaaTN 479 (597)
...++.+...+.. ..+.||+|||+|.+....+ ...++.|+..++. ....+|+++|
T Consensus 78 ----~~~i~~~i~~~~~~~sl~~~~~kvIiIDEaD~L~~~~d-----------~~~~~aL~~~l~~----~~~~iIli~n 138 (482)
T PRK04195 78 ----ADVIERVAGEAATSGSLFGARRKLILLDEVDGIHGNED-----------RGGARAILELIKK----AKQPIILTAN 138 (482)
T ss_pred ----HHHHHHHHHHhhccCcccCCCCeEEEEecCcccccccc-----------hhHHHHHHHHHHc----CCCCEEEecc
Confidence 1223333333322 2467999999999864221 1234566666652 2234556778
Q ss_pred CCCCCCh-hhhCCCCcceEEEecCCCHHHHHHHHHHHHhcCCCCCCCCCCHHHHHHhCCCCCHHHHHHHHHHHHHHHHhc
Q 007575 480 RSDVLDP-ALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTTGFTGADLANLVNEAALLAGRL 558 (597)
Q Consensus 480 rpd~LD~-aLlRpgRFd~~I~v~~Pd~~eR~eILk~~l~~~~~~l~~dvdl~~LA~~t~G~SgaDL~~Lv~eAal~A~r~ 558 (597)
.+..+.+ .|++ |+ ..|.|++|+..+...+++..+...++.+.++ .++.|+..+.| |++.+++....++ .
T Consensus 139 ~~~~~~~k~Lrs--r~-~~I~f~~~~~~~i~~~L~~i~~~egi~i~~e-aL~~Ia~~s~G----DlR~ain~Lq~~a--~ 208 (482)
T PRK04195 139 DPYDPSLRELRN--AC-LMIEFKRLSTRSIVPVLKRICRKEGIECDDE-ALKEIAERSGG----DLRSAINDLQAIA--E 208 (482)
T ss_pred CccccchhhHhc--cc-eEEEecCCCHHHHHHHHHHHHHHcCCCCCHH-HHHHHHHHcCC----CHHHHHHHHHHHh--c
Confidence 8887777 5554 44 5899999999999999999998888777655 48888887754 7888887766544 3
Q ss_pred CCCcccHHHHHHH
Q 007575 559 NKVVVEKIDFIHA 571 (597)
Q Consensus 559 ~~~~It~~d~~~A 571 (597)
+...|+.+++...
T Consensus 209 ~~~~it~~~v~~~ 221 (482)
T PRK04195 209 GYGKLTLEDVKTL 221 (482)
T ss_pred CCCCCcHHHHHHh
Confidence 4456777766543
No 64
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.71 E-value=5.3e-16 Score=166.33 Aligned_cols=211 Identities=18% Similarity=0.184 Sum_probs=149.6
Q ss_pred CCCCcccccccCChHHHHHHHHHHHHhcChhHHhhcCCCCCCceEEeCCCCChHHHHHHHHHHhcCCCeee--------e
Q 007575 325 QGDTITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFIS--------C 396 (597)
Q Consensus 325 ~~~~vtf~dV~G~de~k~~L~eiv~~l~~p~~~~~lg~~~p~gVLL~GPPGTGKT~LArAIA~el~~pfi~--------i 396 (597)
.-.+.+|+||+|++.+++.|+..+.. .+.|..+||+||||+|||++|+++|.++++.... .
T Consensus 9 kyrP~~~~~iiGq~~~~~~l~~~~~~-----------~~~~h~~L~~Gp~G~GKTtla~~la~~l~c~~~~~~~pc~~c~ 77 (363)
T PRK14961 9 KWRPQYFRDIIGQKHIVTAISNGLSL-----------GRIHHAWLLSGTRGVGKTTIARLLAKSLNCQNGITSNPCRKCI 77 (363)
T ss_pred HhCCCchhhccChHHHHHHHHHHHHc-----------CCCCeEEEEecCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCH
Confidence 33567899999999999998887752 2356678999999999999999999988642110 0
Q ss_pred chhhhHH--------HH--hhcchHHHHHHHHHHHh----cCCeEEEEcCcchhhhhcCCcccccchhHHHHHHHHHHHH
Q 007575 397 SASEFVE--------LY--VGMGASRVRDLFARAKK----EAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTE 462 (597)
Q Consensus 397 s~sef~~--------~~--vG~~e~~vr~lF~~A~~----~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~eqtLnqLL~e 462 (597)
+|.++.. .. .......++++.+.+.. ....|++|||+|.+.. ...|.|+..
T Consensus 78 ~c~~~~~~~~~d~~~~~~~~~~~v~~ir~i~~~~~~~p~~~~~kviIIDEa~~l~~---------------~a~naLLk~ 142 (363)
T PRK14961 78 ICKEIEKGLCLDLIEIDAASRTKVEEMREILDNIYYSPSKSRFKVYLIDEVHMLSR---------------HSFNALLKT 142 (363)
T ss_pred HHHHHhcCCCCceEEecccccCCHHHHHHHHHHHhcCcccCCceEEEEEChhhcCH---------------HHHHHHHHH
Confidence 1111111 00 01233456666665432 2345999999998842 244778888
Q ss_pred hcCCCCCCcEEEEEecCCCCCCChhhhCCCCcceEEEecCCCHHHHHHHHHHHHhcCCCCCCCCCCHHHHHHhCCCCCHH
Q 007575 463 MDGFDSNSAVIVLGATNRSDVLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTTGFTGA 542 (597)
Q Consensus 463 mdg~~~~~~VIVIaaTNrpd~LD~aLlRpgRFd~~I~v~~Pd~~eR~eILk~~l~~~~~~l~~dvdl~~LA~~t~G~Sga 542 (597)
|+.. +..+.+|.+|+.++.+.+.+.+ |+ ..+.+.+|+.++..++++..++..+..+.++ .++.++..+.| +++
T Consensus 143 lEe~--~~~~~fIl~t~~~~~l~~tI~S--Rc-~~~~~~~l~~~el~~~L~~~~~~~g~~i~~~-al~~ia~~s~G-~~R 215 (363)
T PRK14961 143 LEEP--PQHIKFILATTDVEKIPKTILS--RC-LQFKLKIISEEKIFNFLKYILIKESIDTDEY-ALKLIAYHAHG-SMR 215 (363)
T ss_pred HhcC--CCCeEEEEEcCChHhhhHHHHh--hc-eEEeCCCCCHHHHHHHHHHHHHHcCCCCCHH-HHHHHHHHcCC-CHH
Confidence 8753 3456666677778889999987 77 4789999999999999999888776666554 47788888876 788
Q ss_pred HHHHHHHHHHHHHHhcCCCcccHHHHHHHH
Q 007575 543 DLANLVNEAALLAGRLNKVVVEKIDFIHAV 572 (597)
Q Consensus 543 DL~~Lv~eAal~A~r~~~~~It~~d~~~Al 572 (597)
++.++++.++.. +...|+.+++.+++
T Consensus 216 ~al~~l~~~~~~----~~~~It~~~v~~~l 241 (363)
T PRK14961 216 DALNLLEHAINL----GKGNINIKNVTDML 241 (363)
T ss_pred HHHHHHHHHHHh----cCCCCCHHHHHHHH
Confidence 888888876543 34568888877654
No 65
>PRK13342 recombination factor protein RarA; Reviewed
Probab=99.70 E-value=4.4e-16 Score=169.64 Aligned_cols=202 Identities=28% Similarity=0.409 Sum_probs=147.1
Q ss_pred CCcccccccCChHHHHH---HHHHHHHhcChhHHhhcCCCCCCceEEeCCCCChHHHHHHHHHHhcCCCeeeechhhhHH
Q 007575 327 DTITFADVAGVDEAKEE---LEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFVE 403 (597)
Q Consensus 327 ~~vtf~dV~G~de~k~~---L~eiv~~l~~p~~~~~lg~~~p~gVLL~GPPGTGKT~LArAIA~el~~pfi~is~sef~~ 403 (597)
.+-+|+|++|++++... |..++.. ..+.+++|+||||||||++|+++|+..+.+|+.+++...
T Consensus 7 RP~~l~d~vGq~~~v~~~~~L~~~i~~------------~~~~~ilL~GppGtGKTtLA~~ia~~~~~~~~~l~a~~~-- 72 (413)
T PRK13342 7 RPKTLDEVVGQEHLLGPGKPLRRMIEA------------GRLSSMILWGPPGTGKTTLARIIAGATDAPFEALSAVTS-- 72 (413)
T ss_pred CCCCHHHhcCcHHHhCcchHHHHHHHc------------CCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEEecccc--
Confidence 45679999999998666 6666641 123479999999999999999999999999999987532
Q ss_pred HHhhcchHHHHHHHHHHH----hcCCeEEEEcCcchhhhhcCCcccccchhHHHHHHHHHHHHhcCCCCCCcEEEEEecC
Q 007575 404 LYVGMGASRVRDLFARAK----KEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATN 479 (597)
Q Consensus 404 ~~vG~~e~~vr~lF~~A~----~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~eqtLnqLL~emdg~~~~~~VIVIaaTN 479 (597)
+.+.++.+++.+. .....||||||+|.+... ..+.|+..|+. ..+++|++|+
T Consensus 73 -----~~~~ir~ii~~~~~~~~~g~~~vL~IDEi~~l~~~---------------~q~~LL~~le~----~~iilI~att 128 (413)
T PRK13342 73 -----GVKDLREVIEEARQRRSAGRRTILFIDEIHRFNKA---------------QQDALLPHVED----GTITLIGATT 128 (413)
T ss_pred -----cHHHHHHHHHHHHHhhhcCCceEEEEechhhhCHH---------------HHHHHHHHhhc----CcEEEEEeCC
Confidence 3345666666664 235679999999988533 22556666653 4467776653
Q ss_pred --CCCCCChhhhCCCCcceEEEecCCCHHHHHHHHHHHHhcC--CC-CCCCCCCHHHHHHhCCCCCHHHHHHHHHHHHHH
Q 007575 480 --RSDVLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKK--EL-PLAKDIDLGDIASMTTGFTGADLANLVNEAALL 554 (597)
Q Consensus 480 --rpd~LD~aLlRpgRFd~~I~v~~Pd~~eR~eILk~~l~~~--~~-~l~~dvdl~~LA~~t~G~SgaDL~~Lv~eAal~ 554 (597)
....++++|++ |+ ..+.+.+++.++..++++..+... ++ .+.++ .++.|++.+.| ..+.+.++++.++..
T Consensus 129 ~n~~~~l~~aL~S--R~-~~~~~~~ls~e~i~~lL~~~l~~~~~~~i~i~~~-al~~l~~~s~G-d~R~aln~Le~~~~~ 203 (413)
T PRK13342 129 ENPSFEVNPALLS--RA-QVFELKPLSEEDIEQLLKRALEDKERGLVELDDE-ALDALARLANG-DARRALNLLELAALG 203 (413)
T ss_pred CChhhhccHHHhc--cc-eeeEeCCCCHHHHHHHHHHHHHHhhcCCCCCCHH-HHHHHHHhCCC-CHHHHHHHHHHHHHc
Confidence 34578999999 88 588999999999999999887642 22 34333 36778887754 677777777776543
Q ss_pred HHhcCCCcccHHHHHHHHHHHh
Q 007575 555 AGRLNKVVVEKIDFIHAVERSI 576 (597)
Q Consensus 555 A~r~~~~~It~~d~~~Al~~v~ 576 (597)
...|+.+++.+++....
T Consensus 204 -----~~~It~~~v~~~~~~~~ 220 (413)
T PRK13342 204 -----VDSITLELLEEALQKRA 220 (413)
T ss_pred -----cCCCCHHHHHHHHhhhh
Confidence 45689999888887653
No 66
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=99.70 E-value=3e-16 Score=172.26 Aligned_cols=225 Identities=15% Similarity=0.234 Sum_probs=151.7
Q ss_pred CCCcccccccCChHHHHHHHHHHHHhcChhHHhhcCCCCCCceEEeCCCCChHHHHHHHHHHhc-----CCCeeeechhh
Q 007575 326 GDTITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEA-----EVPFISCSASE 400 (597)
Q Consensus 326 ~~~vtf~dV~G~de~k~~L~eiv~~l~~p~~~~~lg~~~p~gVLL~GPPGTGKT~LArAIA~el-----~~pfi~is~se 400 (597)
.+..+|++.+-.+........+.....++.. ..+++||||||+|||+|++++++++ +..++++++.+
T Consensus 99 ~~~~tFdnFv~g~~n~~a~~~~~~~~~~~~~--------~n~l~lyG~~G~GKTHLl~ai~~~l~~~~~~~~v~yi~~~~ 170 (440)
T PRK14088 99 NPDYTFENFVVGPGNSFAYHAALEVAKNPGR--------YNPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYITSEK 170 (440)
T ss_pred CCCCcccccccCCchHHHHHHHHHHHhCcCC--------CCeEEEEcCCCCcHHHHHHHHHHHHHHhCCCCeEEEEEHHH
Confidence 4678999988545444444444444333311 3469999999999999999999975 46788899998
Q ss_pred hHHHHhhcch-HHHHHHHHHHHhcCCeEEEEcCcchhhhhcCCcccccchhHHHHHHHHHHHHhcCCCCCCcEEEEEecC
Q 007575 401 FVELYVGMGA-SRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATN 479 (597)
Q Consensus 401 f~~~~vG~~e-~~vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~eqtLnqLL~emdg~~~~~~VIVIaaTN 479 (597)
|...+..... ..+.+ |.......+.+|+|||+|.+..... +...|+..++.+......+||++.+
T Consensus 171 f~~~~~~~~~~~~~~~-f~~~~~~~~dvLlIDDi~~l~~~~~-------------~q~elf~~~n~l~~~~k~iIitsd~ 236 (440)
T PRK14088 171 FLNDLVDSMKEGKLNE-FREKYRKKVDVLLIDDVQFLIGKTG-------------VQTELFHTFNELHDSGKQIVICSDR 236 (440)
T ss_pred HHHHHHHHHhcccHHH-HHHHHHhcCCEEEEechhhhcCcHH-------------HHHHHHHHHHHHHHcCCeEEEECCC
Confidence 8776543221 12222 3333334578999999998853321 1122222222222233456666666
Q ss_pred CCCC---CChhhhCCCCc--ceEEEecCCCHHHHHHHHHHHHhcCCCCCCCCCCHHHHHHhCCCCCHHHHHHHHHHHHHH
Q 007575 480 RSDV---LDPALRRPGRF--DRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTTGFTGADLANLVNEAALL 554 (597)
Q Consensus 480 rpd~---LD~aLlRpgRF--d~~I~v~~Pd~~eR~eILk~~l~~~~~~l~~dvdl~~LA~~t~G~SgaDL~~Lv~eAal~ 554 (597)
.|.. +++.+.+ || ...+.+++||.+.|.+|++..+...++.+.+++ ++.||....| +.++|..+++.....
T Consensus 237 ~p~~l~~l~~rL~S--R~~~gl~v~i~~pd~e~r~~IL~~~~~~~~~~l~~ev-~~~Ia~~~~~-~~R~L~g~l~~l~~~ 312 (440)
T PRK14088 237 EPQKLSEFQDRLVS--RFQMGLVAKLEPPDEETRKKIARKMLEIEHGELPEEV-LNFVAENVDD-NLRRLRGAIIKLLVY 312 (440)
T ss_pred CHHHHHHHHHHHhh--HHhcCceEeeCCCCHHHHHHHHHHHHHhcCCCCCHHH-HHHHHhcccc-CHHHHHHHHHHHHHH
Confidence 6654 4577877 66 467899999999999999999987778887775 8899988875 788999999887666
Q ss_pred HHhcCCCcccHHHHHHHHHHHhc
Q 007575 555 AGRLNKVVVEKIDFIHAVERSIA 577 (597)
Q Consensus 555 A~r~~~~~It~~d~~~Al~~v~~ 577 (597)
|...+ ..||.+...+++..++.
T Consensus 313 ~~~~~-~~it~~~a~~~L~~~~~ 334 (440)
T PRK14088 313 KETTG-EEVDLKEAILLLKDFIK 334 (440)
T ss_pred HHHhC-CCCCHHHHHHHHHHHhc
Confidence 65444 34777777777766543
No 67
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=99.70 E-value=7.7e-16 Score=171.00 Aligned_cols=214 Identities=18% Similarity=0.233 Sum_probs=157.1
Q ss_pred cCCCCcccccccCChHHHHHHHHHHHHhcChhHHhhcCCCCCCceEEeCCCCChHHHHHHHHHHhcCCCe----------
Q 007575 324 EQGDTITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPF---------- 393 (597)
Q Consensus 324 ~~~~~vtf~dV~G~de~k~~L~eiv~~l~~p~~~~~lg~~~p~gVLL~GPPGTGKT~LArAIA~el~~pf---------- 393 (597)
....+-+|+|++|++.+.+.|...+.. .+.+.++||+||||||||++|+++|+.+++.-
T Consensus 13 ~kyRP~~f~dliGq~~vv~~L~~ai~~-----------~ri~~a~Lf~Gp~G~GKTT~ArilAk~Lnc~~~~~~~~~~~~ 81 (507)
T PRK06645 13 RKYRPSNFAELQGQEVLVKVLSYTILN-----------DRLAGGYLLTGIRGVGKTTSARIIAKAVNCSALITENTTIKT 81 (507)
T ss_pred hhhCCCCHHHhcCcHHHHHHHHHHHHc-----------CCCCceEEEECCCCCCHHHHHHHHHHHhcCccccccCcCcCC
Confidence 344567899999999999988876652 34567899999999999999999999986521
Q ss_pred -e-eechhhhHHH--------H--hhcchHHHHHHHHHHHhc----CCeEEEEcCcchhhhhcCCcccccchhHHHHHHH
Q 007575 394 -I-SCSASEFVEL--------Y--VGMGASRVRDLFARAKKE----APSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLN 457 (597)
Q Consensus 394 -i-~is~sef~~~--------~--vG~~e~~vr~lF~~A~~~----aP~ILfIDEIDaL~~~r~~~~~~~~~~e~eqtLn 457 (597)
. +-+|..+... . ...+...++++++.+... ...|++|||+|.+.. ...|
T Consensus 82 C~~C~~C~~i~~~~h~Dv~eidaas~~~vd~Ir~iie~a~~~P~~~~~KVvIIDEa~~Ls~---------------~a~n 146 (507)
T PRK06645 82 CEQCTNCISFNNHNHPDIIEIDAASKTSVDDIRRIIESAEYKPLQGKHKIFIIDEVHMLSK---------------GAFN 146 (507)
T ss_pred CCCChHHHHHhcCCCCcEEEeeccCCCCHHHHHHHHHHHHhccccCCcEEEEEEChhhcCH---------------HHHH
Confidence 1 1112222111 0 112456778888777532 346999999998842 3457
Q ss_pred HHHHHhcCCCCCCcEEEEEecCCCCCCChhhhCCCCcceEEEecCCCHHHHHHHHHHHHhcCCCCCCCCCCHHHHHHhCC
Q 007575 458 QLLTEMDGFDSNSAVIVLGATNRSDVLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTT 537 (597)
Q Consensus 458 qLL~emdg~~~~~~VIVIaaTNrpd~LD~aLlRpgRFd~~I~v~~Pd~~eR~eILk~~l~~~~~~l~~dvdl~~LA~~t~ 537 (597)
.|+..|+. +...+++|.+|+.++.+.+.+++ |+ ..+.+..++.++..++++..+++.+..+.++ .++.|++.+.
T Consensus 147 aLLk~LEe--pp~~~vfI~aTte~~kI~~tI~S--Rc-~~~ef~~ls~~el~~~L~~i~~~egi~ie~e-AL~~Ia~~s~ 220 (507)
T PRK06645 147 ALLKTLEE--PPPHIIFIFATTEVQKIPATIIS--RC-QRYDLRRLSFEEIFKLLEYITKQENLKTDIE-ALRIIAYKSE 220 (507)
T ss_pred HHHHHHhh--cCCCEEEEEEeCChHHhhHHHHh--cc-eEEEccCCCHHHHHHHHHHHHHHcCCCCCHH-HHHHHHHHcC
Confidence 88888874 44567777778888889999988 77 4789999999999999999998877666544 4788998887
Q ss_pred CCCHHHHHHHHHHHHHHHHhcCCCcccHHHHHHH
Q 007575 538 GFTGADLANLVNEAALLAGRLNKVVVEKIDFIHA 571 (597)
Q Consensus 538 G~SgaDL~~Lv~eAal~A~r~~~~~It~~d~~~A 571 (597)
| +.+++.++++.++.++... ...||.+++.+.
T Consensus 221 G-slR~al~~Ldkai~~~~~~-~~~It~~~V~~l 252 (507)
T PRK06645 221 G-SARDAVSILDQAASMSAKS-DNIISPQVINQM 252 (507)
T ss_pred C-CHHHHHHHHHHHHHhhccC-CCCcCHHHHHHH
Confidence 6 8899999999887765322 235777776554
No 68
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=99.70 E-value=3.5e-16 Score=183.66 Aligned_cols=218 Identities=21% Similarity=0.289 Sum_probs=154.6
Q ss_pred CCcccccccCChHHHHHHHHHHHHhcChhHHhhcCCCCCCceEEeCCCCChHHHHHHHHHHhc----------CCCeeee
Q 007575 327 DTITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEA----------EVPFISC 396 (597)
Q Consensus 327 ~~vtf~dV~G~de~k~~L~eiv~~l~~p~~~~~lg~~~p~gVLL~GPPGTGKT~LArAIA~el----------~~pfi~i 396 (597)
..-++++++|.++. ++.+++.+.. +...+++|+||||||||++|+.+|... +..++.+
T Consensus 182 r~~~ld~~iGr~~e---i~~~i~~l~r---------~~~~n~lLvG~pGvGKTal~~~La~~i~~~~v~~~l~~~~i~~l 249 (852)
T TIGR03345 182 REGKIDPVLGRDDE---IRQMIDILLR---------RRQNNPILTGEAGVGKTAVVEGLALRIAAGDVPPALRNVRLLSL 249 (852)
T ss_pred cCCCCCcccCCHHH---HHHHHHHHhc---------CCcCceeEECCCCCCHHHHHHHHHHHHhhCCCCccccCCeEEEe
Confidence 35678899999996 4444443322 233478999999999999999999875 2457777
Q ss_pred chhhhH--HHHhhcchHHHHHHHHHHHh-cCCeEEEEcCcchhhhhcCCcccccchhHHHHHHHHHHHHhcCCCCCCcEE
Q 007575 397 SASEFV--ELYVGMGASRVRDLFARAKK-EAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVI 473 (597)
Q Consensus 397 s~sef~--~~~vG~~e~~vr~lF~~A~~-~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~eqtLnqLL~emdg~~~~~~VI 473 (597)
+.+.+. ..+.|+.+++++.+|+++.. ..++||||||||.+.+.++.. +..+ .-|.|+..|. +..+.
T Consensus 250 ~l~~l~ag~~~~ge~e~~lk~ii~e~~~~~~~~ILfIDEih~l~~~g~~~---~~~d----~~n~Lkp~l~----~G~l~ 318 (852)
T TIGR03345 250 DLGLLQAGASVKGEFENRLKSVIDEVKASPQPIILFIDEAHTLIGAGGQA---GQGD----AANLLKPALA----RGELR 318 (852)
T ss_pred ehhhhhcccccchHHHHHHHHHHHHHHhcCCCeEEEEeChHHhccCCCcc---cccc----HHHHhhHHhh----CCCeE
Confidence 777765 35788999999999999975 468899999999998664321 1112 2244555444 56789
Q ss_pred EEEecCCCC-----CCChhhhCCCCcceEEEecCCCHHHHHHHHHHHHhcC----CCCCCCCCCHHHHHHhCCCCC----
Q 007575 474 VLGATNRSD-----VLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKK----ELPLAKDIDLGDIASMTTGFT---- 540 (597)
Q Consensus 474 VIaaTNrpd-----~LD~aLlRpgRFd~~I~v~~Pd~~eR~eILk~~l~~~----~~~l~~dvdl~~LA~~t~G~S---- 540 (597)
+|+||+..+ .+|++|.| ||. .|.|+.|+.+++.+||+.+.... ++.+.++ .+..++..+.+|-
T Consensus 319 ~IgaTT~~e~~~~~~~d~AL~r--Rf~-~i~v~eps~~~~~~iL~~~~~~~e~~~~v~i~d~-al~~~~~ls~ryi~~r~ 394 (852)
T TIGR03345 319 TIAATTWAEYKKYFEKDPALTR--RFQ-VVKVEEPDEETAIRMLRGLAPVLEKHHGVLILDE-AVVAAVELSHRYIPGRQ 394 (852)
T ss_pred EEEecCHHHHhhhhhccHHHHH--hCe-EEEeCCCCHHHHHHHHHHHHHhhhhcCCCeeCHH-HHHHHHHHccccccccc
Confidence 999998743 48999999 996 89999999999999987665432 2334433 4777888777654
Q ss_pred -HHHHHHHHHHHHHHHHhc-CCCcccHHHHHHH
Q 007575 541 -GADLANLVNEAALLAGRL-NKVVVEKIDFIHA 571 (597)
Q Consensus 541 -gaDL~~Lv~eAal~A~r~-~~~~It~~d~~~A 571 (597)
|.....++++|+...... ....+..+++++.
T Consensus 395 LPDKAIdlldea~a~~~~~~~~~p~~~~~~~~~ 427 (852)
T TIGR03345 395 LPDKAVSLLDTACARVALSQNATPAALEDLRRR 427 (852)
T ss_pred CccHHHHHHHHHHHHHHHhccCCchhHHHHHHH
Confidence 467778999987655433 3333444444433
No 69
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.70 E-value=6.5e-16 Score=173.83 Aligned_cols=203 Identities=20% Similarity=0.232 Sum_probs=150.5
Q ss_pred CCCcccccccCChHHHHHHHHHHHHhcChhHHhhcCCCCCCceEEeCCCCChHHHHHHHHHHhcCCC-------------
Q 007575 326 GDTITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVP------------- 392 (597)
Q Consensus 326 ~~~vtf~dV~G~de~k~~L~eiv~~l~~p~~~~~lg~~~p~gVLL~GPPGTGKT~LArAIA~el~~p------------- 392 (597)
..+.+|+||+|++.+++.|...+. ..+.+..+||+||||||||++|+++|+.+++.
T Consensus 9 yRPktFddVIGQe~vv~~L~~aI~-----------~grl~HAyLF~GPpGvGKTTlAriLAK~LnC~~~~~~~pCg~C~s 77 (702)
T PRK14960 9 YRPRNFNELVGQNHVSRALSSALE-----------RGRLHHAYLFTGTRGVGKTTIARILAKCLNCETGVTSTPCEVCAT 77 (702)
T ss_pred hCCCCHHHhcCcHHHHHHHHHHHH-----------cCCCCeEEEEECCCCCCHHHHHHHHHHHhCCCcCCCCCCCccCHH
Confidence 356789999999999999988876 23456789999999999999999999998652
Q ss_pred -----------eeeechhhhHHHHhhcchHHHHHHHHHHHh----cCCeEEEEcCcchhhhhcCCcccccchhHHHHHHH
Q 007575 393 -----------FISCSASEFVELYVGMGASRVRDLFARAKK----EAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLN 457 (597)
Q Consensus 393 -----------fi~is~sef~~~~vG~~e~~vr~lF~~A~~----~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~eqtLn 457 (597)
++.+++++ ..+...+|++...+.. +...|++|||+|.|.. ...|
T Consensus 78 C~~I~~g~hpDviEIDAAs------~~~VddIReli~~~~y~P~~gk~KV~IIDEVh~LS~---------------~A~N 136 (702)
T PRK14960 78 CKAVNEGRFIDLIEIDAAS------RTKVEDTRELLDNVPYAPTQGRFKVYLIDEVHMLST---------------HSFN 136 (702)
T ss_pred HHHHhcCCCCceEEecccc------cCCHHHHHHHHHHHhhhhhcCCcEEEEEechHhcCH---------------HHHH
Confidence 22222211 1234556777665532 3456999999998853 2457
Q ss_pred HHHHHhcCCCCCCcEEEEEecCCCCCCChhhhCCCCcceEEEecCCCHHHHHHHHHHHHhcCCCCCCCCCCHHHHHHhCC
Q 007575 458 QLLTEMDGFDSNSAVIVLGATNRSDVLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTT 537 (597)
Q Consensus 458 qLL~emdg~~~~~~VIVIaaTNrpd~LD~aLlRpgRFd~~I~v~~Pd~~eR~eILk~~l~~~~~~l~~dvdl~~LA~~t~ 537 (597)
.|+..|+.. ...+.+|.+|+.+..+.+.+++ |+. ++.|.+++.++..+.++..+.+.++.+.++ .+..|++.+.
T Consensus 137 ALLKtLEEP--P~~v~FILaTtd~~kIp~TIlS--RCq-~feFkpLs~eEI~k~L~~Il~kEgI~id~e-AL~~IA~~S~ 210 (702)
T PRK14960 137 ALLKTLEEP--PEHVKFLFATTDPQKLPITVIS--RCL-QFTLRPLAVDEITKHLGAILEKEQIAADQD-AIWQIAESAQ 210 (702)
T ss_pred HHHHHHhcC--CCCcEEEEEECChHhhhHHHHH--hhh-eeeccCCCHHHHHHHHHHHHHHcCCCCCHH-HHHHHHHHcC
Confidence 888888853 3456777777888888888887 774 889999999999999999998877776655 4888898887
Q ss_pred CCCHHHHHHHHHHHHHHHHhcCCCcccHHHHHHH
Q 007575 538 GFTGADLANLVNEAALLAGRLNKVVVEKIDFIHA 571 (597)
Q Consensus 538 G~SgaDL~~Lv~eAal~A~r~~~~~It~~d~~~A 571 (597)
| +.+++.+++..+... +...|+.+++...
T Consensus 211 G-dLRdALnLLDQaIay----g~g~IT~edV~~l 239 (702)
T PRK14960 211 G-SLRDALSLTDQAIAY----GQGAVHHQDVKEM 239 (702)
T ss_pred C-CHHHHHHHHHHHHHh----cCCCcCHHHHHHH
Confidence 6 788888888776543 3445777776553
No 70
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.70 E-value=2.5e-16 Score=176.76 Aligned_cols=196 Identities=18% Similarity=0.264 Sum_probs=145.3
Q ss_pred CCCcccccccCChHHHHHHHHHHHHhcChhHHhhcCCCCCCceEEeCCCCChHHHHHHHHHHhcCC------------Ce
Q 007575 326 GDTITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEV------------PF 393 (597)
Q Consensus 326 ~~~vtf~dV~G~de~k~~L~eiv~~l~~p~~~~~lg~~~p~gVLL~GPPGTGKT~LArAIA~el~~------------pf 393 (597)
....+|+||+|++.+++.|.+.+.. .+.+..+||+||+|||||++|+.+|+.+++ |.
T Consensus 10 YRPqtFddVIGQe~vv~~L~~al~~-----------gRLpHA~LFtGP~GvGKTTLAriLAkaLnC~~p~~~~g~~~~PC 78 (700)
T PRK12323 10 WRPRDFTTLVGQEHVVRALTHALEQ-----------QRLHHAYLFTGTRGVGKTTLSRILAKSLNCTGADGEGGITAQPC 78 (700)
T ss_pred hCCCcHHHHcCcHHHHHHHHHHHHh-----------CCCceEEEEECCCCCCHHHHHHHHHHHhcCCCccccccCCCCCC
Confidence 4567899999999999999988863 244667899999999999999999999876 11
Q ss_pred eee-chh--------hhHHHH--hhcchHHHHHHHHHHHh----cCCeEEEEcCcchhhhhcCCcccccchhHHHHHHHH
Q 007575 394 ISC-SAS--------EFVELY--VGMGASRVRDLFARAKK----EAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQ 458 (597)
Q Consensus 394 i~i-s~s--------ef~~~~--vG~~e~~vr~lF~~A~~----~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~eqtLnq 458 (597)
-.| +|. ++++.- ...+...+|++.+.+.. +...|++|||+|.|.. ...|.
T Consensus 79 G~C~sC~~I~aG~hpDviEIdAas~~gVDdIReLie~~~~~P~~gr~KViIIDEah~Ls~---------------~AaNA 143 (700)
T PRK12323 79 GQCRACTEIDAGRFVDYIEMDAASNRGVDEMAQLLDKAVYAPTAGRFKVYMIDEVHMLTN---------------HAFNA 143 (700)
T ss_pred cccHHHHHHHcCCCCcceEecccccCCHHHHHHHHHHHHhchhcCCceEEEEEChHhcCH---------------HHHHH
Confidence 111 111 111100 01234567777766543 3457999999999853 34588
Q ss_pred HHHHhcCCCCCCcEEEEEecCCCCCCChhhhCCCCcceEEEecCCCHHHHHHHHHHHHhcCCCCCCCCCCHHHHHHhCCC
Q 007575 459 LLTEMDGFDSNSAVIVLGATNRSDVLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTTG 538 (597)
Q Consensus 459 LL~emdg~~~~~~VIVIaaTNrpd~LD~aLlRpgRFd~~I~v~~Pd~~eR~eILk~~l~~~~~~l~~dvdl~~LA~~t~G 538 (597)
||..|+. ....+++|.+||.++.|.+.+++ |+ .++.|..++.++..+.|+..+.+.++...++ .++.|++.+.|
T Consensus 144 LLKTLEE--PP~~v~FILaTtep~kLlpTIrS--RC-q~f~f~~ls~eei~~~L~~Il~~Egi~~d~e-AL~~IA~~A~G 217 (700)
T PRK12323 144 MLKTLEE--PPEHVKFILATTDPQKIPVTVLS--RC-LQFNLKQMPPGHIVSHLDAILGEEGIAHEVN-ALRLLAQAAQG 217 (700)
T ss_pred HHHhhcc--CCCCceEEEEeCChHhhhhHHHH--HH-HhcccCCCChHHHHHHHHHHHHHcCCCCCHH-HHHHHHHHcCC
Confidence 9999984 44567888889999999999998 77 4889999999999999998887766655433 36788888876
Q ss_pred CCHHHHHHHHHHHHHH
Q 007575 539 FTGADLANLVNEAALL 554 (597)
Q Consensus 539 ~SgaDL~~Lv~eAal~ 554 (597)
+.++..++++++...
T Consensus 218 -s~RdALsLLdQaia~ 232 (700)
T PRK12323 218 -SMRDALSLTDQAIAY 232 (700)
T ss_pred -CHHHHHHHHHHHHHh
Confidence 788998988876643
No 71
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=99.70 E-value=3.7e-16 Score=177.35 Aligned_cols=198 Identities=19% Similarity=0.256 Sum_probs=146.5
Q ss_pred CCCCcccccccCChHHHHHHHHHHHHhcChhHHhhcCCCCCCceEEeCCCCChHHHHHHHHHHhcCCCe-------eee-
Q 007575 325 QGDTITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPF-------ISC- 396 (597)
Q Consensus 325 ~~~~vtf~dV~G~de~k~~L~eiv~~l~~p~~~~~lg~~~p~gVLL~GPPGTGKT~LArAIA~el~~pf-------i~i- 396 (597)
....-+|+||+|++++++.|...++ ..+.+..+||+||+|||||++|+++|+.+++.- -.|
T Consensus 9 KYRPqtFdEVIGQe~Vv~~L~~aL~-----------~gRL~HAyLFtGPpGvGKTTlAriLAKaLnCe~~~~~~PCG~C~ 77 (830)
T PRK07003 9 KWRPKDFASLVGQEHVVRALTHALD-----------GGRLHHAYLFTGTRGVGKTTLSRIFAKALNCETGVTSQPCGVCR 77 (830)
T ss_pred HhCCCcHHHHcCcHHHHHHHHHHHh-----------cCCCCeEEEEECCCCCCHHHHHHHHHHHhcCccCCCCCCCcccH
Confidence 3456789999999999999988875 234566789999999999999999999886521 000
Q ss_pred chhhhH--------HH--HhhcchHHHHHHHHHHHh----cCCeEEEEcCcchhhhhcCCcccccchhHHHHHHHHHHHH
Q 007575 397 SASEFV--------EL--YVGMGASRVRDLFARAKK----EAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTE 462 (597)
Q Consensus 397 s~sef~--------~~--~vG~~e~~vr~lF~~A~~----~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~eqtLnqLL~e 462 (597)
+|..+. +. ....+...++++++.+.. ....|+||||+|.|.. ...|.||..
T Consensus 78 sCr~I~~G~h~DviEIDAas~rgVDdIReLIe~a~~~P~~gr~KVIIIDEah~LT~---------------~A~NALLKt 142 (830)
T PRK07003 78 ACREIDEGRFVDYVEMDAASNRGVDEMAALLERAVYAPVDARFKVYMIDEVHMLTN---------------HAFNAMLKT 142 (830)
T ss_pred HHHHHhcCCCceEEEecccccccHHHHHHHHHHHHhccccCCceEEEEeChhhCCH---------------HHHHHHHHH
Confidence 111111 00 001233457777776543 2346999999999853 245888998
Q ss_pred hcCCCCCCcEEEEEecCCCCCCChhhhCCCCcceEEEecCCCHHHHHHHHHHHHhcCCCCCCCCCCHHHHHHhCCCCCHH
Q 007575 463 MDGFDSNSAVIVLGATNRSDVLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTTGFTGA 542 (597)
Q Consensus 463 mdg~~~~~~VIVIaaTNrpd~LD~aLlRpgRFd~~I~v~~Pd~~eR~eILk~~l~~~~~~l~~dvdl~~LA~~t~G~Sga 542 (597)
|+. ....+++|.+||.++.|.+.|++ |+ .++.|..++.++..+.|+..+.+.++.+.++ .+..|++.+.| +.+
T Consensus 143 LEE--PP~~v~FILaTtd~~KIp~TIrS--RC-q~f~Fk~Ls~eeIv~~L~~Il~~EgI~id~e-AL~lIA~~A~G-smR 215 (830)
T PRK07003 143 LEE--PPPHVKFILATTDPQKIPVTVLS--RC-LQFNLKQMPAGHIVSHLERILGEERIAFEPQ-ALRLLARAAQG-SMR 215 (830)
T ss_pred HHh--cCCCeEEEEEECChhhccchhhh--he-EEEecCCcCHHHHHHHHHHHHHHcCCCCCHH-HHHHHHHHcCC-CHH
Confidence 884 34567888889999999999998 87 4899999999999999999888777776555 48889998887 678
Q ss_pred HHHHHHHHHHHHH
Q 007575 543 DLANLVNEAALLA 555 (597)
Q Consensus 543 DL~~Lv~eAal~A 555 (597)
+..+++.++..+.
T Consensus 216 dALsLLdQAia~~ 228 (830)
T PRK07003 216 DALSLTDQAIAYS 228 (830)
T ss_pred HHHHHHHHHHHhc
Confidence 8888888776543
No 72
>PRK06893 DNA replication initiation factor; Validated
Probab=99.69 E-value=7.5e-16 Score=155.02 Aligned_cols=212 Identities=12% Similarity=0.127 Sum_probs=138.8
Q ss_pred CCCcccccccCChHHHHHHHHHHHHhcChhHHhhcCCCCCCceEEeCCCCChHHHHHHHHHHhc---CCCeeeechhhhH
Q 007575 326 GDTITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEA---EVPFISCSASEFV 402 (597)
Q Consensus 326 ~~~vtf~dV~G~de~k~~L~eiv~~l~~p~~~~~lg~~~p~gVLL~GPPGTGKT~LArAIA~el---~~pfi~is~sef~ 402 (597)
.+..+|++++|.+... .+..+.... . ......++||||||||||+|++|+|+++ +....+++..+..
T Consensus 10 ~~~~~fd~f~~~~~~~-~~~~~~~~~------~---~~~~~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~y~~~~~~~ 79 (229)
T PRK06893 10 IDDETLDNFYADNNLL-LLDSLRKNF------I---DLQQPFFYIWGGKSSGKSHLLKAVSNHYLLNQRTAIYIPLSKSQ 79 (229)
T ss_pred CCcccccccccCChHH-HHHHHHHHh------h---ccCCCeEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEeeHHHhh
Confidence 3568899999877532 122222111 1 1122358999999999999999999885 3444445443221
Q ss_pred HHHhhcchHHHHHHHHHHHhcCCeEEEEcCcchhhhhcCCcccccchhHHHHHHHHHHHHhcCCCCCCcEEEEEecCCCC
Q 007575 403 ELYVGMGASRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATNRSD 482 (597)
Q Consensus 403 ~~~vG~~e~~vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~eqtLnqLL~emdg~~~~~~VIVIaaTNrpd 482 (597)
. ...++++... ...+|+|||++.+... +..+..+..++..+. .....++|++++..|.
T Consensus 80 ~--------~~~~~~~~~~--~~dlLilDDi~~~~~~----------~~~~~~l~~l~n~~~--~~~~~illits~~~p~ 137 (229)
T PRK06893 80 Y--------FSPAVLENLE--QQDLVCLDDLQAVIGN----------EEWELAIFDLFNRIK--EQGKTLLLISADCSPH 137 (229)
T ss_pred h--------hhHHHHhhcc--cCCEEEEeChhhhcCC----------hHHHHHHHHHHHHHH--HcCCcEEEEeCCCChH
Confidence 1 1112333332 3469999999988532 122334444444442 1123345666666676
Q ss_pred CCC---hhhhCCCCcceEEEecCCCHHHHHHHHHHHHhcCCCCCCCCCCHHHHHHhCCCCCHHHHHHHHHHHHHHHHhcC
Q 007575 483 VLD---PALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTTGFTGADLANLVNEAALLAGRLN 559 (597)
Q Consensus 483 ~LD---~aLlRpgRFd~~I~v~~Pd~~eR~eILk~~l~~~~~~l~~dvdl~~LA~~t~G~SgaDL~~Lv~eAal~A~r~~ 559 (597)
.++ +.|.++.++...+.++.|+.++|.+|++.++...++.+.+++ ++.|+++.+| +.+.+.++++.....+. ..
T Consensus 138 ~l~~~~~~L~sRl~~g~~~~l~~pd~e~~~~iL~~~a~~~~l~l~~~v-~~~L~~~~~~-d~r~l~~~l~~l~~~~~-~~ 214 (229)
T PRK06893 138 ALSIKLPDLASRLTWGEIYQLNDLTDEQKIIVLQRNAYQRGIELSDEV-ANFLLKRLDR-DMHTLFDALDLLDKASL-QA 214 (229)
T ss_pred HccccchhHHHHHhcCCeeeCCCCCHHHHHHHHHHHHHHcCCCCCHHH-HHHHHHhccC-CHHHHHHHHHHHHHHHH-hc
Confidence 654 889885566788999999999999999999987788887775 8899998875 78888888887654343 33
Q ss_pred CCcccHHHHHHHH
Q 007575 560 KVVVEKIDFIHAV 572 (597)
Q Consensus 560 ~~~It~~d~~~Al 572 (597)
...||...+++++
T Consensus 215 ~~~it~~~v~~~L 227 (229)
T PRK06893 215 QRKLTIPFVKEIL 227 (229)
T ss_pred CCCCCHHHHHHHh
Confidence 3469988887765
No 73
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.69 E-value=8.4e-16 Score=171.28 Aligned_cols=204 Identities=17% Similarity=0.187 Sum_probs=150.4
Q ss_pred CCCCcccccccCChHHHHHHHHHHHHhcChhHHhhcCCCCCCceEEeCCCCChHHHHHHHHHHhcCCC------------
Q 007575 325 QGDTITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVP------------ 392 (597)
Q Consensus 325 ~~~~vtf~dV~G~de~k~~L~eiv~~l~~p~~~~~lg~~~p~gVLL~GPPGTGKT~LArAIA~el~~p------------ 392 (597)
...+-+|+||+|++.+++.|...+.. .+.+..+||+||||||||++|+++|+.+++.
T Consensus 9 kyRP~~f~divGq~~v~~~L~~~~~~-----------~~l~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~C~ 77 (509)
T PRK14958 9 KWRPRCFQEVIGQAPVVRALSNALDQ-----------QYLHHAYLFTGTRGVGKTTISRILAKCLNCEKGVSANPCNDCE 77 (509)
T ss_pred HHCCCCHHHhcCCHHHHHHHHHHHHh-----------CCCCeeEEEECCCCCCHHHHHHHHHHHhcCCCCCCcccCCCCH
Confidence 34567899999999999999988863 2456678999999999999999999988653
Q ss_pred ------------eeeechhhhHHHHhhcchHHHHHHHHHHHh----cCCeEEEEcCcchhhhhcCCcccccchhHHHHHH
Q 007575 393 ------------FISCSASEFVELYVGMGASRVRDLFARAKK----EAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTL 456 (597)
Q Consensus 393 ------------fi~is~sef~~~~vG~~e~~vr~lF~~A~~----~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~eqtL 456 (597)
++.++.. ...+...+|++.+.+.. +...|++|||+|.+... ..
T Consensus 78 ~C~~i~~g~~~d~~eidaa------s~~~v~~iR~l~~~~~~~p~~~~~kV~iIDE~~~ls~~---------------a~ 136 (509)
T PRK14958 78 NCREIDEGRFPDLFEVDAA------SRTKVEDTRELLDNIPYAPTKGRFKVYLIDEVHMLSGH---------------SF 136 (509)
T ss_pred HHHHHhcCCCceEEEEccc------ccCCHHHHHHHHHHHhhccccCCcEEEEEEChHhcCHH---------------HH
Confidence 2222221 12234557777766542 23469999999998532 35
Q ss_pred HHHHHHhcCCCCCCcEEEEEecCCCCCCChhhhCCCCcceEEEecCCCHHHHHHHHHHHHhcCCCCCCCCCCHHHHHHhC
Q 007575 457 NQLLTEMDGFDSNSAVIVLGATNRSDVLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMT 536 (597)
Q Consensus 457 nqLL~emdg~~~~~~VIVIaaTNrpd~LD~aLlRpgRFd~~I~v~~Pd~~eR~eILk~~l~~~~~~l~~dvdl~~LA~~t 536 (597)
|.|+..|+.. ...+++|.+|+.+..+.+.+++ |+ ..+.+.+++.++..+.++..+.+.++.+.++ .+..|++.+
T Consensus 137 naLLk~LEep--p~~~~fIlattd~~kl~~tI~S--Rc-~~~~f~~l~~~~i~~~l~~il~~egi~~~~~-al~~ia~~s 210 (509)
T PRK14958 137 NALLKTLEEP--PSHVKFILATTDHHKLPVTVLS--RC-LQFHLAQLPPLQIAAHCQHLLKEENVEFENA-ALDLLARAA 210 (509)
T ss_pred HHHHHHHhcc--CCCeEEEEEECChHhchHHHHH--Hh-hhhhcCCCCHHHHHHHHHHHHHHcCCCCCHH-HHHHHHHHc
Confidence 8899988853 3456777777888888888888 76 3778999999999999988888777776544 478888888
Q ss_pred CCCCHHHHHHHHHHHHHHHHhcCCCcccHHHHHHH
Q 007575 537 TGFTGADLANLVNEAALLAGRLNKVVVEKIDFIHA 571 (597)
Q Consensus 537 ~G~SgaDL~~Lv~eAal~A~r~~~~~It~~d~~~A 571 (597)
.| +.+++.++++.+... +...|+.+++.+.
T Consensus 211 ~G-slR~al~lLdq~ia~----~~~~It~~~V~~~ 240 (509)
T PRK14958 211 NG-SVRDALSLLDQSIAY----GNGKVLIADVKTM 240 (509)
T ss_pred CC-cHHHHHHHHHHHHhc----CCCCcCHHHHHHH
Confidence 65 788999999877543 2345777666544
No 74
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=99.68 E-value=8.2e-16 Score=152.58 Aligned_cols=206 Identities=17% Similarity=0.218 Sum_probs=138.9
Q ss_pred CCcccccccC--ChHHHHHHHHHHHHhcChhHHhhcCCCCCCceEEeCCCCChHHHHHHHHHHhc---CCCeeeechhhh
Q 007575 327 DTITFADVAG--VDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEA---EVPFISCSASEF 401 (597)
Q Consensus 327 ~~vtf~dV~G--~de~k~~L~eiv~~l~~p~~~~~lg~~~p~gVLL~GPPGTGKT~LArAIA~el---~~pfi~is~sef 401 (597)
...+|++++. ...+.+.+++++. ...+.+++|+||||||||++|++++.++ +.++++++|+++
T Consensus 10 ~~~~~~~~~~~~~~~~~~~l~~~~~------------~~~~~~lll~G~~G~GKT~la~~~~~~~~~~~~~~~~i~~~~~ 77 (226)
T TIGR03420 10 DDPTFDNFYAGGNAELLAALRQLAA------------GKGDRFLYLWGESGSGKSHLLQAACAAAEERGKSAIYLPLAEL 77 (226)
T ss_pred CchhhcCcCcCCcHHHHHHHHHHHh------------cCCCCeEEEECCCCCCHHHHHHHHHHHHHhcCCcEEEEeHHHH
Confidence 3567888873 4445555555542 1345689999999999999999999876 578899999887
Q ss_pred HHHHhhcchHHHHHHHHHHHhcCCeEEEEcCcchhhhhcCCcccccchhHHHHHHHHHHHHhcCCCCCCcEEEEEecCCC
Q 007575 402 VELYVGMGASRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATNRS 481 (597)
Q Consensus 402 ~~~~vG~~e~~vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~eqtLnqLL~emdg~~~~~~VIVIaaTNrp 481 (597)
.... .+++.... .+.+|+|||+|.+.... +....+-.++..+. .....+|++++..+
T Consensus 78 ~~~~--------~~~~~~~~--~~~lLvIDdi~~l~~~~----------~~~~~L~~~l~~~~---~~~~~iIits~~~~ 134 (226)
T TIGR03420 78 AQAD--------PEVLEGLE--QADLVCLDDVEAIAGQP----------EWQEALFHLYNRVR---EAGGRLLIAGRAAP 134 (226)
T ss_pred HHhH--------HHHHhhcc--cCCEEEEeChhhhcCCh----------HHHHHHHHHHHHHH---HcCCeEEEECCCCh
Confidence 5432 23333222 23599999999885321 11122333333332 12234555444444
Q ss_pred CCC---ChhhhCCCCc--ceEEEecCCCHHHHHHHHHHHHhcCCCCCCCCCCHHHHHHhCCCCCHHHHHHHHHHHHHHHH
Q 007575 482 DVL---DPALRRPGRF--DRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTTGFTGADLANLVNEAALLAG 556 (597)
Q Consensus 482 d~L---D~aLlRpgRF--d~~I~v~~Pd~~eR~eILk~~l~~~~~~l~~dvdl~~LA~~t~G~SgaDL~~Lv~eAal~A~ 556 (597)
..+ ++.|.+ || ..++.+++|+.+++..+++.++.+.++.+.+++ ++.|+.. .+.+.+++.++++++...+.
T Consensus 135 ~~~~~~~~~L~~--r~~~~~~i~l~~l~~~e~~~~l~~~~~~~~~~~~~~~-l~~L~~~-~~gn~r~L~~~l~~~~~~~~ 210 (226)
T TIGR03420 135 AQLPLRLPDLRT--RLAWGLVFQLPPLSDEEKIAALQSRAARRGLQLPDEV-ADYLLRH-GSRDMGSLMALLDALDRASL 210 (226)
T ss_pred HHCCcccHHHHH--HHhcCeeEecCCCCHHHHHHHHHHHHHHcCCCCCHHH-HHHHHHh-ccCCHHHHHHHHHHHHHHHH
Confidence 443 277776 55 578999999999999999988877677776664 7888886 45689999999999876655
Q ss_pred hcCCCcccHHHHHHHH
Q 007575 557 RLNKVVVEKIDFIHAV 572 (597)
Q Consensus 557 r~~~~~It~~d~~~Al 572 (597)
..+ ..|+.+.+.+.+
T Consensus 211 ~~~-~~i~~~~~~~~~ 225 (226)
T TIGR03420 211 AAK-RKITIPFVKEVL 225 (226)
T ss_pred HhC-CCCCHHHHHHHh
Confidence 544 569988877664
No 75
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=99.68 E-value=1.2e-15 Score=171.45 Aligned_cols=224 Identities=19% Similarity=0.218 Sum_probs=146.6
Q ss_pred CCCcccccccCChHHHHHHHHHHHHhcChhHHhhcCCCCCCceEEeCCCCChHHHHHHHHHHhc-----CCCeeeechhh
Q 007575 326 GDTITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEA-----EVPFISCSASE 400 (597)
Q Consensus 326 ~~~vtf~dV~G~de~k~~L~eiv~~l~~p~~~~~lg~~~p~gVLL~GPPGTGKT~LArAIA~el-----~~pfi~is~se 400 (597)
.+..+|++++..+........+......+. .....++|||++|+|||+|++|+++++ +..++++++.+
T Consensus 282 ~~~~TFDnFvvG~sN~~A~aaa~avae~~~-------~~~NpL~LyG~sGsGKTHLL~AIa~~a~~~~~g~~V~Yitaee 354 (617)
T PRK14086 282 NPKYTFDTFVIGASNRFAHAAAVAVAEAPA-------KAYNPLFIYGESGLGKTHLLHAIGHYARRLYPGTRVRYVSSEE 354 (617)
T ss_pred CCCCCHhhhcCCCccHHHHHHHHHHHhCcc-------ccCCcEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeHHH
Confidence 467899998755543322222222222221 112349999999999999999999976 56889999999
Q ss_pred hHHHHhhcchHHHHHHHHHHHhcCCeEEEEcCcchhhhhcCCcccccchhHHHHHHHHHHHHhcCCCCCCcEEEEEecCC
Q 007575 401 FVELYVGMGASRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATNR 480 (597)
Q Consensus 401 f~~~~vG~~e~~vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~eqtLnqLL~emdg~~~~~~VIVIaaTNr 480 (597)
|...+.........+.|.+.. ..+++|+||||+.+..+.. .+..+-.+++.+ ....+-+||++...
T Consensus 355 f~~el~~al~~~~~~~f~~~y-~~~DLLlIDDIq~l~gke~----------tqeeLF~l~N~l---~e~gk~IIITSd~~ 420 (617)
T PRK14086 355 FTNEFINSIRDGKGDSFRRRY-REMDILLVDDIQFLEDKES----------TQEEFFHTFNTL---HNANKQIVLSSDRP 420 (617)
T ss_pred HHHHHHHHHHhccHHHHHHHh-hcCCEEEEehhccccCCHH----------HHHHHHHHHHHH---HhcCCCEEEecCCC
Confidence 987765443332233344322 3467999999999864321 111222233332 22233355544433
Q ss_pred C---CCCChhhhCCCCc--ceEEEecCCCHHHHHHHHHHHHhcCCCCCCCCCCHHHHHHhCCCCCHHHHHHHHHHHHHHH
Q 007575 481 S---DVLDPALRRPGRF--DRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTTGFTGADLANLVNEAALLA 555 (597)
Q Consensus 481 p---d~LD~aLlRpgRF--d~~I~v~~Pd~~eR~eILk~~l~~~~~~l~~dvdl~~LA~~t~G~SgaDL~~Lv~eAal~A 555 (597)
| ..+++.|.+ || ...+.+..||.+.|.+||+.++...++.+.+++ ++.|+.+..+ +.++|..+++.....|
T Consensus 421 P~eL~~l~~rL~S--Rf~~GLvv~I~~PD~EtR~aIL~kka~~r~l~l~~eV-i~yLa~r~~r-nvR~LegaL~rL~a~a 496 (617)
T PRK14086 421 PKQLVTLEDRLRN--RFEWGLITDVQPPELETRIAILRKKAVQEQLNAPPEV-LEFIASRISR-NIRELEGALIRVTAFA 496 (617)
T ss_pred hHhhhhccHHHHh--hhhcCceEEcCCCCHHHHHHHHHHHHHhcCCCCCHHH-HHHHHHhccC-CHHHHHHHHHHHHHHH
Confidence 4 357899998 77 567799999999999999999998888888775 8889988874 7889999888876655
Q ss_pred HhcCCCcccHHHHHHHHHHH
Q 007575 556 GRLNKVVVEKIDFIHAVERS 575 (597)
Q Consensus 556 ~r~~~~~It~~d~~~Al~~v 575 (597)
...+ ..|+.+.++++++.+
T Consensus 497 ~~~~-~~itl~la~~vL~~~ 515 (617)
T PRK14086 497 SLNR-QPVDLGLTEIVLRDL 515 (617)
T ss_pred HhhC-CCCCHHHHHHHHHHh
Confidence 4433 335555555555444
No 76
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=99.68 E-value=2.2e-15 Score=158.12 Aligned_cols=209 Identities=19% Similarity=0.221 Sum_probs=138.5
Q ss_pred CCCcccccccCChHHHHHHHHHHHHhcChhHHhhcCCCCCCceEEeCCCCChHHHHHHHHHHhcC-----CCeeeechhh
Q 007575 326 GDTITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAE-----VPFISCSASE 400 (597)
Q Consensus 326 ~~~vtf~dV~G~de~k~~L~eiv~~l~~p~~~~~lg~~~p~gVLL~GPPGTGKT~LArAIA~el~-----~pfi~is~se 400 (597)
..+.+|++++|.+++++.|...+.. ....++||+||||||||++|+++++++. .+++.+++.+
T Consensus 9 y~P~~~~~~~g~~~~~~~L~~~~~~------------~~~~~lll~Gp~GtGKT~la~~~~~~l~~~~~~~~~~~i~~~~ 76 (337)
T PRK12402 9 YRPALLEDILGQDEVVERLSRAVDS------------PNLPHLLVQGPPGSGKTAAVRALARELYGDPWENNFTEFNVAD 76 (337)
T ss_pred hCCCcHHHhcCCHHHHHHHHHHHhC------------CCCceEEEECCCCCCHHHHHHHHHHHhcCcccccceEEechhh
Confidence 3457799999999999888887651 1123699999999999999999999873 4678888877
Q ss_pred hHHHH-------------hhc-------chHHHHHHHHHHHh-----cCCeEEEEcCcchhhhhcCCcccccchhHHHHH
Q 007575 401 FVELY-------------VGM-------GASRVRDLFARAKK-----EAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQT 455 (597)
Q Consensus 401 f~~~~-------------vG~-------~e~~vr~lF~~A~~-----~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~eqt 455 (597)
+.... .+. ....++.+...... ..+.+|+|||+|.+... .
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlilDe~~~l~~~---------------~ 141 (337)
T PRK12402 77 FFDQGKKYLVEDPRFAHFLGTDKRIRSSKIDNFKHVLKEYASYRPLSADYKTILLDNAEALRED---------------A 141 (337)
T ss_pred hhhcchhhhhcCcchhhhhhhhhhhccchHHHHHHHHHHHHhcCCCCCCCcEEEEeCcccCCHH---------------H
Confidence 64321 111 11223333333322 23459999999987422 1
Q ss_pred HHHHHHHhcCCCCCCcEEEEEecCCCCCCChhhhCCCCcceEEEecCCCHHHHHHHHHHHHhcCCCCCCCCCCHHHHHHh
Q 007575 456 LNQLLTEMDGFDSNSAVIVLGATNRSDVLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASM 535 (597)
Q Consensus 456 LnqLL~emdg~~~~~~VIVIaaTNrpd~LD~aLlRpgRFd~~I~v~~Pd~~eR~eILk~~l~~~~~~l~~dvdl~~LA~~ 535 (597)
.+.|...|+..... ..+|.+++.+..+.+.|.+ |+ ..+.+.+|+.++..++++..+.+.++.+.++ .++.|+..
T Consensus 142 ~~~L~~~le~~~~~--~~~Il~~~~~~~~~~~L~s--r~-~~v~~~~~~~~~~~~~l~~~~~~~~~~~~~~-al~~l~~~ 215 (337)
T PRK12402 142 QQALRRIMEQYSRT--CRFIIATRQPSKLIPPIRS--RC-LPLFFRAPTDDELVDVLESIAEAEGVDYDDD-GLELIAYY 215 (337)
T ss_pred HHHHHHHHHhccCC--CeEEEEeCChhhCchhhcC--Cc-eEEEecCCCHHHHHHHHHHHHHHcCCCCCHH-HHHHHHHH
Confidence 23455555544332 3344455556677778877 66 4789999999999999999988877776655 48888887
Q ss_pred CCCCCHHHHHHHHHHHHHHHHhcCCCcccHHHHHHHHH
Q 007575 536 TTGFTGADLANLVNEAALLAGRLNKVVVEKIDFIHAVE 573 (597)
Q Consensus 536 t~G~SgaDL~~Lv~eAal~A~r~~~~~It~~d~~~Al~ 573 (597)
+.| +.++ +++.....+. ....||.+++++++.
T Consensus 216 ~~g-dlr~---l~~~l~~~~~--~~~~It~~~v~~~~~ 247 (337)
T PRK12402 216 AGG-DLRK---AILTLQTAAL--AAGEITMEAAYEALG 247 (337)
T ss_pred cCC-CHHH---HHHHHHHHHH--cCCCCCHHHHHHHhC
Confidence 743 4444 4444443332 223688888776544
No 77
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.67 E-value=2.3e-15 Score=167.55 Aligned_cols=203 Identities=21% Similarity=0.258 Sum_probs=148.7
Q ss_pred CCCCcccccccCChHHHHHHHHHHHHhcChhHHhhcCCCCCCceEEeCCCCChHHHHHHHHHHhcCCC------------
Q 007575 325 QGDTITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVP------------ 392 (597)
Q Consensus 325 ~~~~vtf~dV~G~de~k~~L~eiv~~l~~p~~~~~lg~~~p~gVLL~GPPGTGKT~LArAIA~el~~p------------ 392 (597)
...+.+|+||+|++++++.|...+.. .+.|..+||+||||||||++|+++|..+.+.
T Consensus 7 KyRP~~~~dvvGq~~v~~~L~~~i~~-----------~~l~ha~Lf~GppGtGKTTlA~~lA~~l~c~~~~~~~cg~C~s 75 (504)
T PRK14963 7 RARPITFDEVVGQEHVKEVLLAALRQ-----------GRLGHAYLFSGPRGVGKTTTARLIAMAVNCSGEDPKPCGECES 75 (504)
T ss_pred hhCCCCHHHhcChHHHHHHHHHHHHc-----------CCCCeEEEEECCCCCCHHHHHHHHHHHHhccCCCCCCCCcChh
Confidence 34567899999999999999988873 2356668999999999999999999987541
Q ss_pred -----------eeeechhhhHHHHhhcchHHHHHHHHHHHh----cCCeEEEEcCcchhhhhcCCcccccchhHHHHHHH
Q 007575 393 -----------FISCSASEFVELYVGMGASRVRDLFARAKK----EAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLN 457 (597)
Q Consensus 393 -----------fi~is~sef~~~~vG~~e~~vr~lF~~A~~----~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~eqtLn 457 (597)
++.++.+ ...+...++++.+.+.. ..+.||+|||+|.+. ...++
T Consensus 76 c~~i~~~~h~dv~el~~~------~~~~vd~iR~l~~~~~~~p~~~~~kVVIIDEad~ls---------------~~a~n 134 (504)
T PRK14963 76 CLAVRRGAHPDVLEIDAA------SNNSVEDVRDLREKVLLAPLRGGRKVYILDEAHMMS---------------KSAFN 134 (504)
T ss_pred hHHHhcCCCCceEEeccc------ccCCHHHHHHHHHHHhhccccCCCeEEEEECccccC---------------HHHHH
Confidence 2222221 11233456666555442 346799999998763 23568
Q ss_pred HHHHHhcCCCCCCcEEEEEecCCCCCCChhhhCCCCcceEEEecCCCHHHHHHHHHHHHhcCCCCCCCCCCHHHHHHhCC
Q 007575 458 QLLTEMDGFDSNSAVIVLGATNRSDVLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTT 537 (597)
Q Consensus 458 qLL~emdg~~~~~~VIVIaaTNrpd~LD~aLlRpgRFd~~I~v~~Pd~~eR~eILk~~l~~~~~~l~~dvdl~~LA~~t~ 537 (597)
.|+..|+.. ...+++|.+|+.+..+.+.+.+ |+. .+.|.+|+.++..+.++..+.+.++.+.++ .++.|+..+.
T Consensus 135 aLLk~LEep--~~~t~~Il~t~~~~kl~~~I~S--Rc~-~~~f~~ls~~el~~~L~~i~~~egi~i~~~-Al~~ia~~s~ 208 (504)
T PRK14963 135 ALLKTLEEP--PEHVIFILATTEPEKMPPTILS--RTQ-HFRFRRLTEEEIAGKLRRLLEAEGREAEPE-ALQLVARLAD 208 (504)
T ss_pred HHHHHHHhC--CCCEEEEEEcCChhhCChHHhc--ceE-EEEecCCCHHHHHHHHHHHHHHcCCCCCHH-HHHHHHHHcC
Confidence 888888753 3456777788888999999988 764 799999999999999999998877776554 4788888887
Q ss_pred CCCHHHHHHHHHHHHHHHHhcCCCcccHHHHHHH
Q 007575 538 GFTGADLANLVNEAALLAGRLNKVVVEKIDFIHA 571 (597)
Q Consensus 538 G~SgaDL~~Lv~eAal~A~r~~~~~It~~d~~~A 571 (597)
| +.+++.++++.+... ...||.+++.+.
T Consensus 209 G-dlR~aln~Lekl~~~-----~~~It~~~V~~~ 236 (504)
T PRK14963 209 G-AMRDAESLLERLLAL-----GTPVTRKQVEEA 236 (504)
T ss_pred C-CHHHHHHHHHHHHhc-----CCCCCHHHHHHH
Confidence 5 567777777765432 235887776655
No 78
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.67 E-value=2.1e-15 Score=166.67 Aligned_cols=202 Identities=18% Similarity=0.230 Sum_probs=153.6
Q ss_pred CCcccccccCChHHHHHHHHHHHHhcChhHHhhcCCCCCCceEEeCCCCChHHHHHHHHHHhcCC---------------
Q 007575 327 DTITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEV--------------- 391 (597)
Q Consensus 327 ~~vtf~dV~G~de~k~~L~eiv~~l~~p~~~~~lg~~~p~gVLL~GPPGTGKT~LArAIA~el~~--------------- 391 (597)
.+.+|+||+|++.+++.|...+.. .+.|.++||+||||+|||++|+.+|..+++
T Consensus 8 RP~~f~dliGQe~vv~~L~~a~~~-----------~ri~ha~Lf~Gp~G~GKTT~ArilAk~LnC~~~~~~~pCg~C~~C 76 (491)
T PRK14964 8 RPSSFKDLVGQDVLVRILRNAFTL-----------NKIPQSILLVGASGVGKTTCARIISLCLNCSNGPTSDPCGTCHNC 76 (491)
T ss_pred CCCCHHHhcCcHHHHHHHHHHHHc-----------CCCCceEEEECCCCccHHHHHHHHHHHHcCcCCCCCCCccccHHH
Confidence 457899999999999988877652 345778999999999999999999987643
Q ss_pred ---------CeeeechhhhHHHHhhcchHHHHHHHHHHHh----cCCeEEEEcCcchhhhhcCCcccccchhHHHHHHHH
Q 007575 392 ---------PFISCSASEFVELYVGMGASRVRDLFARAKK----EAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQ 458 (597)
Q Consensus 392 ---------pfi~is~sef~~~~vG~~e~~vr~lF~~A~~----~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~eqtLnq 458 (597)
.++.+++++ ..+...+|++.+.+.. ....|++|||+|.|.. ...|.
T Consensus 77 ~~i~~~~~~Dv~eidaas------~~~vddIR~Iie~~~~~P~~~~~KVvIIDEah~Ls~---------------~A~Na 135 (491)
T PRK14964 77 ISIKNSNHPDVIEIDAAS------NTSVDDIKVILENSCYLPISSKFKVYIIDEVHMLSN---------------SAFNA 135 (491)
T ss_pred HHHhccCCCCEEEEeccc------CCCHHHHHHHHHHHHhccccCCceEEEEeChHhCCH---------------HHHHH
Confidence 223333221 1244567887777653 2346999999998842 34688
Q ss_pred HHHHhcCCCCCCcEEEEEecCCCCCCChhhhCCCCcceEEEecCCCHHHHHHHHHHHHhcCCCCCCCCCCHHHHHHhCCC
Q 007575 459 LLTEMDGFDSNSAVIVLGATNRSDVLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTTG 538 (597)
Q Consensus 459 LL~emdg~~~~~~VIVIaaTNrpd~LD~aLlRpgRFd~~I~v~~Pd~~eR~eILk~~l~~~~~~l~~dvdl~~LA~~t~G 538 (597)
|+..|+. +...+++|.+|+.++.+.+.+++ |+. .+.+.+++.++..+.++..+.+.++.+.++ .++.|++.+.|
T Consensus 136 LLK~LEe--Pp~~v~fIlatte~~Kl~~tI~S--Rc~-~~~f~~l~~~el~~~L~~ia~~Egi~i~~e-AL~lIa~~s~G 209 (491)
T PRK14964 136 LLKTLEE--PAPHVKFILATTEVKKIPVTIIS--RCQ-RFDLQKIPTDKLVEHLVDIAKKENIEHDEE-SLKLIAENSSG 209 (491)
T ss_pred HHHHHhC--CCCCeEEEEEeCChHHHHHHHHH--hhe-eeecccccHHHHHHHHHHHHHHcCCCCCHH-HHHHHHHHcCC
Confidence 9999985 33457777777888889999988 774 789999999999999999998877777655 48888988875
Q ss_pred CCHHHHHHHHHHHHHHHHhcCCCcccHHHHHHH
Q 007575 539 FTGADLANLVNEAALLAGRLNKVVVEKIDFIHA 571 (597)
Q Consensus 539 ~SgaDL~~Lv~eAal~A~r~~~~~It~~d~~~A 571 (597)
+.+++.++++.++..+. ..||.+++.+.
T Consensus 210 -slR~alslLdqli~y~~----~~It~e~V~~l 237 (491)
T PRK14964 210 -SMRNALFLLEQAAIYSN----NKISEKSVRDL 237 (491)
T ss_pred -CHHHHHHHHHHHHHhcC----CCCCHHHHHHH
Confidence 88899999988876542 36888777654
No 79
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=99.67 E-value=2.1e-15 Score=171.14 Aligned_cols=208 Identities=21% Similarity=0.280 Sum_probs=148.9
Q ss_pred CCcccccccCChHHHHHHHHHHHHhcChhHHhhcCCCCCCceEEeCCCCChHHHHHHHHHHhcCCCe-------eee-ch
Q 007575 327 DTITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPF-------ISC-SA 398 (597)
Q Consensus 327 ~~vtf~dV~G~de~k~~L~eiv~~l~~p~~~~~lg~~~p~gVLL~GPPGTGKT~LArAIA~el~~pf-------i~i-s~ 398 (597)
.+.+|+||+|++.+++.|...+.. .+.+..+||+||+|+|||++|+++|+.+++.. -.| +|
T Consensus 11 RP~~f~divGQe~vv~~L~~~l~~-----------~rl~hAyLf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~C~~C 79 (647)
T PRK07994 11 RPQTFAEVVGQEHVLTALANALDL-----------GRLHHAYLFSGTRGVGKTTIARLLAKGLNCETGITATPCGECDNC 79 (647)
T ss_pred CCCCHHHhcCcHHHHHHHHHHHHc-----------CCCCeEEEEECCCCCCHHHHHHHHHHhhhhccCCCCCCCCCCHHH
Confidence 457899999999999998888762 23456689999999999999999999987631 111 11
Q ss_pred hh--------hHHHHh--hcchHHHHHHHHHHHh----cCCeEEEEcCcchhhhhcCCcccccchhHHHHHHHHHHHHhc
Q 007575 399 SE--------FVELYV--GMGASRVRDLFARAKK----EAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMD 464 (597)
Q Consensus 399 se--------f~~~~v--G~~e~~vr~lF~~A~~----~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~eqtLnqLL~emd 464 (597)
.. +.+... ..+...+|++.+.+.. +...|++|||+|.|.. ...|.||..|+
T Consensus 80 ~~i~~g~~~D~ieidaas~~~VddiR~li~~~~~~p~~g~~KV~IIDEah~Ls~---------------~a~NALLKtLE 144 (647)
T PRK07994 80 REIEQGRFVDLIEIDAASRTKVEDTRELLDNVQYAPARGRFKVYLIDEVHMLSR---------------HSFNALLKTLE 144 (647)
T ss_pred HHHHcCCCCCceeecccccCCHHHHHHHHHHHHhhhhcCCCEEEEEechHhCCH---------------HHHHHHHHHHH
Confidence 11 111000 1233456776666542 3456999999999853 35589999998
Q ss_pred CCCCCCcEEEEEecCCCCCCChhhhCCCCcceEEEecCCCHHHHHHHHHHHHhcCCCCCCCCCCHHHHHHhCCCCCHHHH
Q 007575 465 GFDSNSAVIVLGATNRSDVLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTTGFTGADL 544 (597)
Q Consensus 465 g~~~~~~VIVIaaTNrpd~LD~aLlRpgRFd~~I~v~~Pd~~eR~eILk~~l~~~~~~l~~dvdl~~LA~~t~G~SgaDL 544 (597)
. +...+++|.+|+.++.|.+.+++ |+ ..+.|..++.++..+.|+..+...++...++ .+..|+..+.| +.+++
T Consensus 145 E--Pp~~v~FIL~Tt~~~kLl~TI~S--RC-~~~~f~~Ls~~ei~~~L~~il~~e~i~~e~~-aL~~Ia~~s~G-s~R~A 217 (647)
T PRK07994 145 E--PPEHVKFLLATTDPQKLPVTILS--RC-LQFHLKALDVEQIRQQLEHILQAEQIPFEPR-ALQLLARAADG-SMRDA 217 (647)
T ss_pred c--CCCCeEEEEecCCccccchHHHh--hh-eEeeCCCCCHHHHHHHHHHHHHHcCCCCCHH-HHHHHHHHcCC-CHHHH
Confidence 4 44567777778889999999998 76 6899999999999999999887766655443 47788888876 78888
Q ss_pred HHHHHHHHHHHHhcCCCcccHHHHHHH
Q 007575 545 ANLVNEAALLAGRLNKVVVEKIDFIHA 571 (597)
Q Consensus 545 ~~Lv~eAal~A~r~~~~~It~~d~~~A 571 (597)
.+++..|... +...|+.+++...
T Consensus 218 l~lldqaia~----~~~~it~~~v~~~ 240 (647)
T PRK07994 218 LSLTDQAIAS----GNGQVTTDDVSAM 240 (647)
T ss_pred HHHHHHHHHh----cCCCcCHHHHHHH
Confidence 8888876533 2234565555443
No 80
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.67 E-value=3e-15 Score=172.80 Aligned_cols=195 Identities=21% Similarity=0.261 Sum_probs=142.6
Q ss_pred CCCCcccccccCChHHHHHHHHHHHHhcChhHHhhcCCCCCCceEEeCCCCChHHHHHHHHHHhcCCC-------eeee-
Q 007575 325 QGDTITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVP-------FISC- 396 (597)
Q Consensus 325 ~~~~vtf~dV~G~de~k~~L~eiv~~l~~p~~~~~lg~~~p~gVLL~GPPGTGKT~LArAIA~el~~p-------fi~i- 396 (597)
...+.+|+||+|++.+++.|+.++.. .+.+..+||+||||||||++|+++|+++++. +..|
T Consensus 9 KyRP~tFddIIGQe~Iv~~LknaI~~-----------~rl~HAyLFtGPpGtGKTTLARiLAk~Lnce~~~~~~pCg~C~ 77 (944)
T PRK14949 9 KWRPATFEQMVGQSHVLHALTNALTQ-----------QRLHHAYLFTGTRGVGKTSLARLFAKGLNCEQGVTATPCGVCS 77 (944)
T ss_pred HhCCCCHHHhcCcHHHHHHHHHHHHh-----------CCCCeEEEEECCCCCCHHHHHHHHHHhccCccCCCCCCCCCch
Confidence 34568899999999999998887752 2456678999999999999999999998764 1111
Q ss_pred chhhhHHH-------Hh---hcchHHHHHHHHHHHh----cCCeEEEEcCcchhhhhcCCcccccchhHHHHHHHHHHHH
Q 007575 397 SASEFVEL-------YV---GMGASRVRDLFARAKK----EAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTE 462 (597)
Q Consensus 397 s~sef~~~-------~v---G~~e~~vr~lF~~A~~----~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~eqtLnqLL~e 462 (597)
+|-.+... +- ..+...+|++.+.+.. +...|+||||+|.|.. ...|.||..
T Consensus 78 sC~~i~~g~~~DviEidAas~~kVDdIReLie~v~~~P~~gk~KViIIDEAh~LT~---------------eAqNALLKt 142 (944)
T PRK14949 78 SCVEIAQGRFVDLIEVDAASRTKVDDTRELLDNVQYRPSRGRFKVYLIDEVHMLSR---------------SSFNALLKT 142 (944)
T ss_pred HHHHHhcCCCceEEEeccccccCHHHHHHHHHHHHhhhhcCCcEEEEEechHhcCH---------------HHHHHHHHH
Confidence 11111110 00 1223456666655542 3346999999999853 356899999
Q ss_pred hcCCCCCCcEEEEEecCCCCCCChhhhCCCCcceEEEecCCCHHHHHHHHHHHHhcCCCCCCCCCCHHHHHHhCCCCCHH
Q 007575 463 MDGFDSNSAVIVLGATNRSDVLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTTGFTGA 542 (597)
Q Consensus 463 mdg~~~~~~VIVIaaTNrpd~LD~aLlRpgRFd~~I~v~~Pd~~eR~eILk~~l~~~~~~l~~dvdl~~LA~~t~G~Sga 542 (597)
|+. ....+++|.+|+.+..|.+.|++ |+ .++.|.+++.++..+.|+..+...++.+.++ .+..|++.+.| +.+
T Consensus 143 LEE--PP~~vrFILaTTe~~kLl~TIlS--RC-q~f~fkpLs~eEI~~~L~~il~~EgI~~ede-AL~lIA~~S~G-d~R 215 (944)
T PRK14949 143 LEE--PPEHVKFLLATTDPQKLPVTVLS--RC-LQFNLKSLTQDEIGTQLNHILTQEQLPFEAE-ALTLLAKAANG-SMR 215 (944)
T ss_pred Hhc--cCCCeEEEEECCCchhchHHHHH--hh-eEEeCCCCCHHHHHHHHHHHHHHcCCCCCHH-HHHHHHHHcCC-CHH
Confidence 985 34456777778888889899988 77 5799999999999999999887766655444 47888888876 788
Q ss_pred HHHHHHHHHH
Q 007575 543 DLANLVNEAA 552 (597)
Q Consensus 543 DL~~Lv~eAa 552 (597)
++.+++..|.
T Consensus 216 ~ALnLLdQal 225 (944)
T PRK14949 216 DALSLTDQAI 225 (944)
T ss_pred HHHHHHHHHH
Confidence 8999988766
No 81
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=99.67 E-value=2.4e-15 Score=150.22 Aligned_cols=202 Identities=16% Similarity=0.179 Sum_probs=137.2
Q ss_pred CCcccccccCC--hHHHHHHHHHHHHhcChhHHhhcCCCCCCceEEeCCCCChHHHHHHHHHHhc---CCCeeeechhhh
Q 007575 327 DTITFADVAGV--DEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEA---EVPFISCSASEF 401 (597)
Q Consensus 327 ~~vtf~dV~G~--de~k~~L~eiv~~l~~p~~~~~lg~~~p~gVLL~GPPGTGKT~LArAIA~el---~~pfi~is~sef 401 (597)
++.+|+++++. .++...++++.. +.....+++|+||+|||||+||++++.++ +.+++.+++.++
T Consensus 13 ~~~~~d~f~~~~~~~~~~~l~~~~~-----------~~~~~~~~~l~G~~G~GKT~La~ai~~~~~~~~~~~~~i~~~~~ 81 (227)
T PRK08903 13 PPPTFDNFVAGENAELVARLRELAA-----------GPVADRFFYLWGEAGSGRSHLLQALVADASYGGRNARYLDAASP 81 (227)
T ss_pred ChhhhcccccCCcHHHHHHHHHHHh-----------ccCCCCeEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEehHHh
Confidence 45789997733 444444444433 22345679999999999999999999875 678888888776
Q ss_pred HHHHhhcchHHHHHHHHHHHhcCCeEEEEcCcchhhhhcCCcccccchhHHHHHHHHHHHHhcCCCCCCcE-EEEEecCC
Q 007575 402 VELYVGMGASRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAV-IVLGATNR 480 (597)
Q Consensus 402 ~~~~vG~~e~~vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~eqtLnqLL~emdg~~~~~~V-IVIaaTNr 480 (597)
.... . ......+|+|||+|.+.... ...+..++..+ ...... ++++++..
T Consensus 82 ~~~~------------~--~~~~~~~liiDdi~~l~~~~------------~~~L~~~~~~~---~~~~~~~vl~~~~~~ 132 (227)
T PRK08903 82 LLAF------------D--FDPEAELYAVDDVERLDDAQ------------QIALFNLFNRV---RAHGQGALLVAGPAA 132 (227)
T ss_pred HHHH------------h--hcccCCEEEEeChhhcCchH------------HHHHHHHHHHH---HHcCCcEEEEeCCCC
Confidence 4321 1 12235699999999874221 12233333333 223333 44444433
Q ss_pred C--CCCChhhhCCCCc--ceEEEecCCCHHHHHHHHHHHHhcCCCCCCCCCCHHHHHHhCCCCCHHHHHHHHHHHHHHHH
Q 007575 481 S--DVLDPALRRPGRF--DRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTTGFTGADLANLVNEAALLAG 556 (597)
Q Consensus 481 p--d~LD~aLlRpgRF--d~~I~v~~Pd~~eR~eILk~~l~~~~~~l~~dvdl~~LA~~t~G~SgaDL~~Lv~eAal~A~ 556 (597)
| ..+.+.|.+ || ...+.+++|+.+++..+++.+..+.++.+.+++ ++.|++..+ -+.+++.++++.....|.
T Consensus 133 ~~~~~l~~~L~s--r~~~~~~i~l~pl~~~~~~~~l~~~~~~~~v~l~~~a-l~~L~~~~~-gn~~~l~~~l~~l~~~~~ 208 (227)
T PRK08903 133 PLALPLREDLRT--RLGWGLVYELKPLSDADKIAALKAAAAERGLQLADEV-PDYLLTHFR-RDMPSLMALLDALDRYSL 208 (227)
T ss_pred HHhCCCCHHHHH--HHhcCeEEEecCCCHHHHHHHHHHHHHHcCCCCCHHH-HHHHHHhcc-CCHHHHHHHHHHHHHHHH
Confidence 3 235677876 66 578999999999999999988877778887664 888888655 488999999998766664
Q ss_pred hcCCCcccHHHHHHHHH
Q 007575 557 RLNKVVVEKIDFIHAVE 573 (597)
Q Consensus 557 r~~~~~It~~d~~~Al~ 573 (597)
..+ ..||...+.+++.
T Consensus 209 ~~~-~~i~~~~~~~~l~ 224 (227)
T PRK08903 209 EQK-RPVTLPLLREMLA 224 (227)
T ss_pred HhC-CCCCHHHHHHHHh
Confidence 444 6799888877764
No 82
>PLN03025 replication factor C subunit; Provisional
Probab=99.67 E-value=1.5e-15 Score=159.96 Aligned_cols=201 Identities=20% Similarity=0.209 Sum_probs=137.9
Q ss_pred CCCCcccccccCChHHHHHHHHHHHHhcChhHHhhcCCCCCCceEEeCCCCChHHHHHHHHHHhcC-----CCeeeechh
Q 007575 325 QGDTITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAE-----VPFISCSAS 399 (597)
Q Consensus 325 ~~~~vtf~dV~G~de~k~~L~eiv~~l~~p~~~~~lg~~~p~gVLL~GPPGTGKT~LArAIA~el~-----~pfi~is~s 399 (597)
...+.+|+|++|++++.+.|+.++.. ... .++||+||||||||++|+++|+++. ..++.++.+
T Consensus 6 kyrP~~l~~~~g~~~~~~~L~~~~~~-----------~~~-~~lll~Gp~G~GKTtla~~la~~l~~~~~~~~~~eln~s 73 (319)
T PLN03025 6 KYRPTKLDDIVGNEDAVSRLQVIARD-----------GNM-PNLILSGPPGTGKTTSILALAHELLGPNYKEAVLELNAS 73 (319)
T ss_pred hcCCCCHHHhcCcHHHHHHHHHHHhc-----------CCC-ceEEEECCCCCCHHHHHHHHHHHHhcccCccceeeeccc
Confidence 34567899999999999988877652 122 2599999999999999999999973 235666665
Q ss_pred hhHHHHhhcchHHHHHHHHHHHh-------cCCeEEEEcCcchhhhhcCCcccccchhHHHHHHHHHHHHhcCCCCCCcE
Q 007575 400 EFVELYVGMGASRVRDLFARAKK-------EAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAV 472 (597)
Q Consensus 400 ef~~~~vG~~e~~vr~lF~~A~~-------~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~eqtLnqLL~emdg~~~~~~V 472 (597)
+.. +...+++.++.... ..+.||+|||+|.+.... .+.|+..|+.+... .
T Consensus 74 d~~------~~~~vr~~i~~~~~~~~~~~~~~~kviiiDE~d~lt~~a---------------q~aL~~~lE~~~~~--t 130 (319)
T PLN03025 74 DDR------GIDVVRNKIKMFAQKKVTLPPGRHKIVILDEADSMTSGA---------------QQALRRTMEIYSNT--T 130 (319)
T ss_pred ccc------cHHHHHHHHHHHHhccccCCCCCeEEEEEechhhcCHHH---------------HHHHHHHHhcccCC--c
Confidence 432 12234444332211 235799999999986432 25566667644333 3
Q ss_pred EEEEecCCCCCCChhhhCCCCcceEEEecCCCHHHHHHHHHHHHhcCCCCCCCCCCHHHHHHhCCCCCHHHHHHHHHHHH
Q 007575 473 IVLGATNRSDVLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTTGFTGADLANLVNEAA 552 (597)
Q Consensus 473 IVIaaTNrpd~LD~aLlRpgRFd~~I~v~~Pd~~eR~eILk~~l~~~~~~l~~dvdl~~LA~~t~G~SgaDL~~Lv~eAa 552 (597)
.+|.+||.+..+.++|++ |+ ..+.|++|+.++..+.++..+++.++.+.++ .++.|+..+.| ..+.+.+.++
T Consensus 131 ~~il~~n~~~~i~~~L~S--Rc-~~i~f~~l~~~~l~~~L~~i~~~egi~i~~~-~l~~i~~~~~g-DlR~aln~Lq--- 202 (319)
T PLN03025 131 RFALACNTSSKIIEPIQS--RC-AIVRFSRLSDQEILGRLMKVVEAEKVPYVPE-GLEAIIFTADG-DMRQALNNLQ--- 202 (319)
T ss_pred eEEEEeCCccccchhHHH--hh-hcccCCCCCHHHHHHHHHHHHHHcCCCCCHH-HHHHHHHHcCC-CHHHHHHHHH---
Confidence 455677888888899988 76 4789999999999999999998888887765 48888887764 4444444444
Q ss_pred HHHHhcCCCcccHHHHHH
Q 007575 553 LLAGRLNKVVVEKIDFIH 570 (597)
Q Consensus 553 l~A~r~~~~~It~~d~~~ 570 (597)
..+. +...|+.+++.+
T Consensus 203 ~~~~--~~~~i~~~~v~~ 218 (319)
T PLN03025 203 ATHS--GFGFVNQENVFK 218 (319)
T ss_pred HHHh--cCCCCCHHHHHH
Confidence 2221 234577666543
No 83
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=99.66 E-value=2.9e-15 Score=164.56 Aligned_cols=230 Identities=18% Similarity=0.203 Sum_probs=143.6
Q ss_pred CCCcccccccCChHHHHHHHHHHHHhcChhHHhhcCCCCCCceEEeCCCCChHHHHHHHHHHhc---CCCeeeechhhhH
Q 007575 326 GDTITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEA---EVPFISCSASEFV 402 (597)
Q Consensus 326 ~~~vtf~dV~G~de~k~~L~eiv~~l~~p~~~~~lg~~~p~gVLL~GPPGTGKT~LArAIA~el---~~pfi~is~sef~ 402 (597)
.+..+|++.+-.+........+......+.. .+.....+++||||+|+|||+|++++++++ +..++++++.+|.
T Consensus 105 ~~~~tFdnFv~g~~N~~a~~~a~~~a~~~~~---~~~~~~npl~L~G~~G~GKTHLl~Ai~~~l~~~~~~v~yi~~~~f~ 181 (445)
T PRK12422 105 DPLMTFANFLVTPENDLPHRILQEFTKVSEQ---GKGFPFNPIYLFGPEGSGKTHLMQAAVHALRESGGKILYVRSELFT 181 (445)
T ss_pred CccccccceeeCCcHHHHHHHHHHHHhcccc---ccCCCCceEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEeeHHHHH
Confidence 4678999987333333222222222222110 011223579999999999999999999875 6889999998886
Q ss_pred HHHhhcchHHHHHHHHHHHhcCCeEEEEcCcchhhhhcCCcccccchhHHHHHHHHHHHHhcCCCCCCcEEEEEecCCCC
Q 007575 403 ELYVGMGASRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATNRSD 482 (597)
Q Consensus 403 ~~~vG~~e~~vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~eqtLnqLL~emdg~~~~~~VIVIaaTNrpd 482 (597)
..+.......-.+.|.... ..+++|+||||+.+..+.. ..++.-.++|.+.. ....+|++++..|.
T Consensus 182 ~~~~~~l~~~~~~~f~~~~-~~~dvLiIDDiq~l~~k~~------~qeelf~l~N~l~~-------~~k~IIlts~~~p~ 247 (445)
T PRK12422 182 EHLVSAIRSGEMQRFRQFY-RNVDALFIEDIEVFSGKGA------TQEEFFHTFNSLHT-------EGKLIVISSTCAPQ 247 (445)
T ss_pred HHHHHHHhcchHHHHHHHc-ccCCEEEEcchhhhcCChh------hHHHHHHHHHHHHH-------CCCcEEEecCCCHH
Confidence 6554332111122344332 3456999999999854321 12223333333321 23346665555553
Q ss_pred ---CCChhhhCCCCcc--eEEEecCCCHHHHHHHHHHHHhcCCCCCCCCCCHHHHHHhCCCCCHHHHHHHHHHHHHH-HH
Q 007575 483 ---VLDPALRRPGRFD--RVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTTGFTGADLANLVNEAALL-AG 556 (597)
Q Consensus 483 ---~LD~aLlRpgRFd--~~I~v~~Pd~~eR~eILk~~l~~~~~~l~~dvdl~~LA~~t~G~SgaDL~~Lv~eAal~-A~ 556 (597)
.++++|.+ ||. ..+.+.+|+.++|.+||+..+...++.+.+++ ++.|+....+ +.++|.+.++..++. |.
T Consensus 248 ~l~~l~~rL~S--R~~~Gl~~~l~~pd~e~r~~iL~~k~~~~~~~l~~ev-l~~la~~~~~-dir~L~g~l~~l~~~~a~ 323 (445)
T PRK12422 248 DLKAMEERLIS--RFEWGIAIPLHPLTKEGLRSFLERKAEALSIRIEETA-LDFLIEALSS-NVKSLLHALTLLAKRVAY 323 (445)
T ss_pred HHhhhHHHHHh--hhcCCeEEecCCCCHHHHHHHHHHHHHHcCCCCCHHH-HHHHHHhcCC-CHHHHHHHHHHHHHHHHH
Confidence 46789988 884 78899999999999999999988777777664 7778887764 677888888877522 21
Q ss_pred hc-CCCcccHHHHHHHHHHHh
Q 007575 557 RL-NKVVVEKIDFIHAVERSI 576 (597)
Q Consensus 557 r~-~~~~It~~d~~~Al~~v~ 576 (597)
.. ....|+.+++++++...+
T Consensus 324 ~~~~~~~i~~~~~~~~l~~~~ 344 (445)
T PRK12422 324 KKLSHQLLYVDDIKALLHDVL 344 (445)
T ss_pred HHhhCCCCCHHHHHHHHHHhh
Confidence 11 223455555555555443
No 84
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=99.66 E-value=2.7e-15 Score=158.94 Aligned_cols=205 Identities=21% Similarity=0.267 Sum_probs=149.1
Q ss_pred CCCCcccccccCChHHHHHHHHHHHHhcChhHHhhcCCCCCCceEEeCCCCChHHHHHHHHHHhcCCC------------
Q 007575 325 QGDTITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVP------------ 392 (597)
Q Consensus 325 ~~~~vtf~dV~G~de~k~~L~eiv~~l~~p~~~~~lg~~~p~gVLL~GPPGTGKT~LArAIA~el~~p------------ 392 (597)
..++.+|++++|++++++.|.+.+.. .+.|..+||+||||+|||++|+++|..+.++
T Consensus 7 ~~rp~~~~~iig~~~~~~~l~~~~~~-----------~~~~~~~Ll~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~ 75 (355)
T TIGR02397 7 KYRPQTFEDVIGQEHIVQTLKNAIKN-----------GRIAHAYLFSGPRGTGKTSIARIFAKALNCQNGPDGEPCNECE 75 (355)
T ss_pred HhCCCcHhhccCcHHHHHHHHHHHHc-----------CCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCH
Confidence 34568899999999999998887752 2356679999999999999999999987532
Q ss_pred ------------eeeechhhhHHHHhhcchHHHHHHHHHHHhc----CCeEEEEcCcchhhhhcCCcccccchhHHHHHH
Q 007575 393 ------------FISCSASEFVELYVGMGASRVRDLFARAKKE----APSIIFIDEIDAVAKSRDGRFRIVSNDEREQTL 456 (597)
Q Consensus 393 ------------fi~is~sef~~~~vG~~e~~vr~lF~~A~~~----aP~ILfIDEIDaL~~~r~~~~~~~~~~e~eqtL 456 (597)
++.+++. ...+...++++++.+... ...||+|||+|.+.. ...
T Consensus 76 ~c~~~~~~~~~~~~~~~~~------~~~~~~~~~~l~~~~~~~p~~~~~~vviidea~~l~~---------------~~~ 134 (355)
T TIGR02397 76 SCKEINSGSSLDVIEIDAA------SNNGVDDIREILDNVKYAPSSGKYKVYIIDEVHMLSK---------------SAF 134 (355)
T ss_pred HHHHHhcCCCCCEEEeecc------ccCCHHHHHHHHHHHhcCcccCCceEEEEeChhhcCH---------------HHH
Confidence 1111111 012334567777776532 235999999998742 245
Q ss_pred HHHHHHhcCCCCCCcEEEEEecCCCCCCChhhhCCCCcceEEEecCCCHHHHHHHHHHHHhcCCCCCCCCCCHHHHHHhC
Q 007575 457 NQLLTEMDGFDSNSAVIVLGATNRSDVLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMT 536 (597)
Q Consensus 457 nqLL~emdg~~~~~~VIVIaaTNrpd~LD~aLlRpgRFd~~I~v~~Pd~~eR~eILk~~l~~~~~~l~~dvdl~~LA~~t 536 (597)
+.|+..++.. ...+++|.+|+.++.+.+++.+ |+. .+.+++|+.++..++++.++++.++.+.++ .+..++..+
T Consensus 135 ~~Ll~~le~~--~~~~~lIl~~~~~~~l~~~l~s--r~~-~~~~~~~~~~~l~~~l~~~~~~~g~~i~~~-a~~~l~~~~ 208 (355)
T TIGR02397 135 NALLKTLEEP--PEHVVFILATTEPHKIPATILS--RCQ-RFDFKRIPLEDIVERLKKILDKEGIKIEDE-ALELIARAA 208 (355)
T ss_pred HHHHHHHhCC--ccceeEEEEeCCHHHHHHHHHh--hee-EEEcCCCCHHHHHHHHHHHHHHcCCCCCHH-HHHHHHHHc
Confidence 7888888753 3456777778888888899988 774 789999999999999999998877766554 477788877
Q ss_pred CCCCHHHHHHHHHHHHHHHHhcCCCcccHHHHHHHH
Q 007575 537 TGFTGADLANLVNEAALLAGRLNKVVVEKIDFIHAV 572 (597)
Q Consensus 537 ~G~SgaDL~~Lv~eAal~A~r~~~~~It~~d~~~Al 572 (597)
.| +++.+.+.++.++..+ + ..|+.+++++++
T Consensus 209 ~g-~~~~a~~~lekl~~~~---~-~~it~~~v~~~~ 239 (355)
T TIGR02397 209 DG-SLRDALSLLDQLISFG---N-GNITYEDVNELL 239 (355)
T ss_pred CC-ChHHHHHHHHHHHhhc---C-CCCCHHHHHHHh
Confidence 65 6777878777776653 2 348887776554
No 85
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=99.66 E-value=4e-15 Score=167.72 Aligned_cols=208 Identities=21% Similarity=0.262 Sum_probs=151.0
Q ss_pred CCCcccccccCChHHHHHHHHHHHHhcChhHHhhcCCCCCCceEEeCCCCChHHHHHHHHHHhcCCCe-------eee-c
Q 007575 326 GDTITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPF-------ISC-S 397 (597)
Q Consensus 326 ~~~vtf~dV~G~de~k~~L~eiv~~l~~p~~~~~lg~~~p~gVLL~GPPGTGKT~LArAIA~el~~pf-------i~i-s 397 (597)
-.+.+|+||+|++.+++.|+..+.. .+.++.+||+||+|||||++|+.+|..++++- -.| +
T Consensus 10 ~rP~~f~~viGq~~v~~~L~~~i~~-----------~~~~hayLf~Gp~GtGKTt~Ak~lAkal~c~~~~~~~pC~~C~~ 78 (559)
T PRK05563 10 WRPQTFEDVVGQEHITKTLKNAIKQ-----------GKISHAYLFSGPRGTGKTSAAKIFAKAVNCLNPPDGEPCNECEI 78 (559)
T ss_pred hCCCcHHhccCcHHHHHHHHHHHHc-----------CCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCccHH
Confidence 3567899999999999999888763 23466799999999999999999999875421 111 1
Q ss_pred hhhhH--------HH--HhhcchHHHHHHHHHHHh----cCCeEEEEcCcchhhhhcCCcccccchhHHHHHHHHHHHHh
Q 007575 398 ASEFV--------EL--YVGMGASRVRDLFARAKK----EAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEM 463 (597)
Q Consensus 398 ~sef~--------~~--~vG~~e~~vr~lF~~A~~----~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~eqtLnqLL~em 463 (597)
|..+. +. ....+...++++.+.+.. ....|++|||+|.|.. ...|.|+..|
T Consensus 79 C~~i~~g~~~dv~eidaas~~~vd~ir~i~~~v~~~p~~~~~kViIIDE~~~Lt~---------------~a~naLLKtL 143 (559)
T PRK05563 79 CKAITNGSLMDVIEIDAASNNGVDEIRDIRDKVKYAPSEAKYKVYIIDEVHMLST---------------GAFNALLKTL 143 (559)
T ss_pred HHHHhcCCCCCeEEeeccccCCHHHHHHHHHHHhhCcccCCeEEEEEECcccCCH---------------HHHHHHHHHh
Confidence 11110 00 012344567888777653 2346999999998842 3468899988
Q ss_pred cCCCCCCcEEEEEecCCCCCCChhhhCCCCcceEEEecCCCHHHHHHHHHHHHhcCCCCCCCCCCHHHHHHhCCCCCHHH
Q 007575 464 DGFDSNSAVIVLGATNRSDVLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTTGFTGAD 543 (597)
Q Consensus 464 dg~~~~~~VIVIaaTNrpd~LD~aLlRpgRFd~~I~v~~Pd~~eR~eILk~~l~~~~~~l~~dvdl~~LA~~t~G~SgaD 543 (597)
+. ++..+++|.+|+.++.+.+.+++ |+. .+.|.+|+.++..+.++..+.+.++.+.++ .+..++..+.| +.++
T Consensus 144 Ee--pp~~~ifIlatt~~~ki~~tI~S--Rc~-~~~f~~~~~~ei~~~L~~i~~~egi~i~~~-al~~ia~~s~G-~~R~ 216 (559)
T PRK05563 144 EE--PPAHVIFILATTEPHKIPATILS--RCQ-RFDFKRISVEDIVERLKYILDKEGIEYEDE-ALRLIARAAEG-GMRD 216 (559)
T ss_pred cC--CCCCeEEEEEeCChhhCcHHHHh--Hhe-EEecCCCCHHHHHHHHHHHHHHcCCCCCHH-HHHHHHHHcCC-CHHH
Confidence 84 34566777777888999999988 775 688999999999999999988777776654 47888888876 7888
Q ss_pred HHHHHHHHHHHHHhcCCCcccHHHHHH
Q 007575 544 LANLVNEAALLAGRLNKVVVEKIDFIH 570 (597)
Q Consensus 544 L~~Lv~eAal~A~r~~~~~It~~d~~~ 570 (597)
+.++++.+...+ ...|+.+++.+
T Consensus 217 al~~Ldq~~~~~----~~~It~~~V~~ 239 (559)
T PRK05563 217 ALSILDQAISFG----DGKVTYEDALE 239 (559)
T ss_pred HHHHHHHHHHhc----cCCCCHHHHHH
Confidence 888888776543 33567665544
No 86
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=99.66 E-value=2.4e-15 Score=170.52 Aligned_cols=209 Identities=20% Similarity=0.267 Sum_probs=151.7
Q ss_pred CCCcccccccCChHHHHHHHHHHHHhcChhHHhhcCCCCCCceEEeCCCCChHHHHHHHHHHhcCCCe-------eee-c
Q 007575 326 GDTITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPF-------ISC-S 397 (597)
Q Consensus 326 ~~~vtf~dV~G~de~k~~L~eiv~~l~~p~~~~~lg~~~p~gVLL~GPPGTGKT~LArAIA~el~~pf-------i~i-s 397 (597)
..+-+|+||+|++.+++.|...+.. .+.+.++||+||+|+|||++|+++|++++++- -.| +
T Consensus 10 YRP~tFddIIGQe~vv~~L~~ai~~-----------~rl~Ha~Lf~GP~GvGKTTlAriLAk~LnC~~~~~~~pCg~C~s 78 (709)
T PRK08691 10 WRPKTFADLVGQEHVVKALQNALDE-----------GRLHHAYLLTGTRGVGKTTIARILAKSLNCENAQHGEPCGVCQS 78 (709)
T ss_pred hCCCCHHHHcCcHHHHHHHHHHHHc-----------CCCCeEEEEECCCCCcHHHHHHHHHHHhcccCCCCCCCCcccHH
Confidence 3567899999999999999888762 34577899999999999999999999886531 111 1
Q ss_pred hhhh--------HHH--HhhcchHHHHHHHHHHHh----cCCeEEEEcCcchhhhhcCCcccccchhHHHHHHHHHHHHh
Q 007575 398 ASEF--------VEL--YVGMGASRVRDLFARAKK----EAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEM 463 (597)
Q Consensus 398 ~sef--------~~~--~vG~~e~~vr~lF~~A~~----~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~eqtLnqLL~em 463 (597)
|..+ .+. ....+...++++++.+.. ....||+|||+|.+.. ...|.||..|
T Consensus 79 Cr~i~~g~~~DvlEidaAs~~gVd~IRelle~a~~~P~~gk~KVIIIDEad~Ls~---------------~A~NALLKtL 143 (709)
T PRK08691 79 CTQIDAGRYVDLLEIDAASNTGIDNIREVLENAQYAPTAGKYKVYIIDEVHMLSK---------------SAFNAMLKTL 143 (709)
T ss_pred HHHHhccCccceEEEeccccCCHHHHHHHHHHHHhhhhhCCcEEEEEECccccCH---------------HHHHHHHHHH
Confidence 1111 000 012234567787776532 3346999999998742 2457889888
Q ss_pred cCCCCCCcEEEEEecCCCCCCChhhhCCCCcceEEEecCCCHHHHHHHHHHHHhcCCCCCCCCCCHHHHHHhCCCCCHHH
Q 007575 464 DGFDSNSAVIVLGATNRSDVLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTTGFTGAD 543 (597)
Q Consensus 464 dg~~~~~~VIVIaaTNrpd~LD~aLlRpgRFd~~I~v~~Pd~~eR~eILk~~l~~~~~~l~~dvdl~~LA~~t~G~SgaD 543 (597)
+.. ...+.+|.+|+.+..+.+.+++ |+ ..+.|..++.++..+.|+..+.+.++.+.++ .+..|++.+.| +.++
T Consensus 144 EEP--p~~v~fILaTtd~~kL~~TIrS--RC-~~f~f~~Ls~eeI~~~L~~Il~kEgi~id~e-AL~~Ia~~A~G-slRd 216 (709)
T PRK08691 144 EEP--PEHVKFILATTDPHKVPVTVLS--RC-LQFVLRNMTAQQVADHLAHVLDSEKIAYEPP-ALQLLGRAAAG-SMRD 216 (709)
T ss_pred HhC--CCCcEEEEEeCCccccchHHHH--HH-hhhhcCCCCHHHHHHHHHHHHHHcCCCcCHH-HHHHHHHHhCC-CHHH
Confidence 853 3456777788888888888886 77 4678889999999999999998877776554 48888988865 7889
Q ss_pred HHHHHHHHHHHHHhcCCCcccHHHHHHH
Q 007575 544 LANLVNEAALLAGRLNKVVVEKIDFIHA 571 (597)
Q Consensus 544 L~~Lv~eAal~A~r~~~~~It~~d~~~A 571 (597)
+.++++.+.... ...|+.+++...
T Consensus 217 AlnLLDqaia~g----~g~It~e~V~~l 240 (709)
T PRK08691 217 ALSLLDQAIALG----SGKVAENDVRQM 240 (709)
T ss_pred HHHHHHHHHHhc----CCCcCHHHHHHH
Confidence 999998876542 345777666554
No 87
>CHL00095 clpC Clp protease ATP binding subunit
Probab=99.66 E-value=2.3e-15 Score=176.77 Aligned_cols=201 Identities=23% Similarity=0.342 Sum_probs=149.2
Q ss_pred CcccccccCChHHHHHHHHHHHHhcChhHHhhcCCCCCCceEEeCCCCChHHHHHHHHHHhc----------CCCeeeec
Q 007575 328 TITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEA----------EVPFISCS 397 (597)
Q Consensus 328 ~vtf~dV~G~de~k~~L~eiv~~l~~p~~~~~lg~~~p~gVLL~GPPGTGKT~LArAIA~el----------~~pfi~is 397 (597)
.-.++.++|.++..+.+.+++. .+.+.+++|+||||||||++|+++|.+. +.+++.++
T Consensus 175 ~~~~~~~igr~~ei~~~~~~L~------------r~~~~n~lL~G~pGvGKTal~~~la~~i~~~~vp~~l~~~~i~~l~ 242 (821)
T CHL00095 175 DGNLDPVIGREKEIERVIQILG------------RRTKNNPILIGEPGVGKTAIAEGLAQRIVNRDVPDILEDKLVITLD 242 (821)
T ss_pred cCCCCCCCCcHHHHHHHHHHHc------------ccccCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEEee
Confidence 3457899999998777777654 2345689999999999999999999975 47899999
Q ss_pred hhhhH--HHHhhcchHHHHHHHHHHHhcCCeEEEEcCcchhhhhcCCcccccchhHHHHHHHHHHHHhcCCCCCCcEEEE
Q 007575 398 ASEFV--ELYVGMGASRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVL 475 (597)
Q Consensus 398 ~sef~--~~~vG~~e~~vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~eqtLnqLL~emdg~~~~~~VIVI 475 (597)
+..++ ..|.|+.+++++.+|+++....++||||||||.|.+..+.. +.. ...+-|...+. +..+.+|
T Consensus 243 ~~~l~ag~~~~ge~e~rl~~i~~~~~~~~~~ILfiDEih~l~~~g~~~---g~~----~~a~lLkp~l~----rg~l~~I 311 (821)
T CHL00095 243 IGLLLAGTKYRGEFEERLKRIFDEIQENNNIILVIDEVHTLIGAGAAE---GAI----DAANILKPALA----RGELQCI 311 (821)
T ss_pred HHHHhccCCCccHHHHHHHHHHHHHHhcCCeEEEEecHHHHhcCCCCC---Ccc----cHHHHhHHHHh----CCCcEEE
Confidence 98887 46788899999999999988889999999999998654321 111 12233444443 4668999
Q ss_pred EecCCCC-----CCChhhhCCCCcceEEEecCCCHHHHHHHHHHHHhc----CCCCCCCCCCHHHHHHhCCCCC-----H
Q 007575 476 GATNRSD-----VLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSK----KELPLAKDIDLGDIASMTTGFT-----G 541 (597)
Q Consensus 476 aaTNrpd-----~LD~aLlRpgRFd~~I~v~~Pd~~eR~eILk~~l~~----~~~~l~~dvdl~~LA~~t~G~S-----g 541 (597)
++|+..+ ..|++|.+ ||. .|.++.|+.++...|++..... .++.+.++ .+..++..+.+|. |
T Consensus 312 gaTt~~ey~~~ie~D~aL~r--Rf~-~I~v~ep~~~e~~aILr~l~~~~e~~~~v~i~de-al~~i~~ls~~yi~~r~lP 387 (821)
T CHL00095 312 GATTLDEYRKHIEKDPALER--RFQ-PVYVGEPSVEETIEILFGLRSRYEKHHNLSISDK-ALEAAAKLSDQYIADRFLP 387 (821)
T ss_pred EeCCHHHHHHHHhcCHHHHh--cce-EEecCCCCHHHHHHHHHHHHHHHHHHcCCCCCHH-HHHHHHHHhhccCccccCc
Confidence 9998764 47999999 997 6899999999999998765432 23344433 3666777666654 4
Q ss_pred HHHHHHHHHHHHHH
Q 007575 542 ADLANLVNEAALLA 555 (597)
Q Consensus 542 aDL~~Lv~eAal~A 555 (597)
.....++++|+...
T Consensus 388 dkaidlld~a~a~~ 401 (821)
T CHL00095 388 DKAIDLLDEAGSRV 401 (821)
T ss_pred hHHHHHHHHHHHHH
Confidence 55667777776544
No 88
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.65 E-value=5.2e-15 Score=167.48 Aligned_cols=209 Identities=16% Similarity=0.233 Sum_probs=150.0
Q ss_pred CCCcccccccCChHHHHHHHHHHHHhcChhHHhhcCCCCCCceEEeCCCCChHHHHHHHHHHhcCCC------------e
Q 007575 326 GDTITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVP------------F 393 (597)
Q Consensus 326 ~~~vtf~dV~G~de~k~~L~eiv~~l~~p~~~~~lg~~~p~gVLL~GPPGTGKT~LArAIA~el~~p------------f 393 (597)
..+.+|+||+|++.+++.|..++.. .+.+..+||+||+|||||++|+++|+.+++. +
T Consensus 10 yRP~~f~dviGQe~vv~~L~~~l~~-----------~rl~ha~Lf~Gp~GvGKTtlAr~lAk~LnC~~~~~~~~~~~~pC 78 (618)
T PRK14951 10 YRPRSFSEMVGQEHVVQALTNALTQ-----------QRLHHAYLFTGTRGVGKTTVSRILAKSLNCQGPDGQGGITATPC 78 (618)
T ss_pred HCCCCHHHhcCcHHHHHHHHHHHHc-----------CCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCcccccCCCCCCC
Confidence 3457899999999999999888763 2456678999999999999999999988651 1
Q ss_pred eee-chhhh--------HHHH--hhcchHHHHHHHHHHHhc----CCeEEEEcCcchhhhhcCCcccccchhHHHHHHHH
Q 007575 394 ISC-SASEF--------VELY--VGMGASRVRDLFARAKKE----APSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQ 458 (597)
Q Consensus 394 i~i-s~sef--------~~~~--vG~~e~~vr~lF~~A~~~----aP~ILfIDEIDaL~~~r~~~~~~~~~~e~eqtLnq 458 (597)
-.| +|..+ .+.- ...+...+|++.+.+... ...|++|||+|.|... ..|.
T Consensus 79 g~C~~C~~i~~g~h~D~~eldaas~~~Vd~iReli~~~~~~p~~g~~KV~IIDEvh~Ls~~---------------a~Na 143 (618)
T PRK14951 79 GVCQACRDIDSGRFVDYTELDAASNRGVDEVQQLLEQAVYKPVQGRFKVFMIDEVHMLTNT---------------AFNA 143 (618)
T ss_pred CccHHHHHHHcCCCCceeecCcccccCHHHHHHHHHHHHhCcccCCceEEEEEChhhCCHH---------------HHHH
Confidence 011 12111 1110 012334677777765432 2359999999998532 3588
Q ss_pred HHHHhcCCCCCCcEEEEEecCCCCCCChhhhCCCCcceEEEecCCCHHHHHHHHHHHHhcCCCCCCCCCCHHHHHHhCCC
Q 007575 459 LLTEMDGFDSNSAVIVLGATNRSDVLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTTG 538 (597)
Q Consensus 459 LL~emdg~~~~~~VIVIaaTNrpd~LD~aLlRpgRFd~~I~v~~Pd~~eR~eILk~~l~~~~~~l~~dvdl~~LA~~t~G 538 (597)
||..|+. ....+++|.+|+.+..+.+.+++ |+ .++.|..++.++..+.++..+.+.++.+.++ .+..|++.+.|
T Consensus 144 LLKtLEE--PP~~~~fIL~Ttd~~kil~TIlS--Rc-~~~~f~~Ls~eei~~~L~~i~~~egi~ie~~-AL~~La~~s~G 217 (618)
T PRK14951 144 MLKTLEE--PPEYLKFVLATTDPQKVPVTVLS--RC-LQFNLRPMAPETVLEHLTQVLAAENVPAEPQ-ALRLLARAARG 217 (618)
T ss_pred HHHhccc--CCCCeEEEEEECCchhhhHHHHH--hc-eeeecCCCCHHHHHHHHHHHHHHcCCCCCHH-HHHHHHHHcCC
Confidence 8988885 34556777777788888888888 76 5899999999999999999888777776554 48888988876
Q ss_pred CCHHHHHHHHHHHHHHHHhcCCCcccHHHHHHH
Q 007575 539 FTGADLANLVNEAALLAGRLNKVVVEKIDFIHA 571 (597)
Q Consensus 539 ~SgaDL~~Lv~eAal~A~r~~~~~It~~d~~~A 571 (597)
+.+++.++++.+...+ ...|+.+++.+.
T Consensus 218 -slR~al~lLdq~ia~~----~~~It~~~V~~~ 245 (618)
T PRK14951 218 -SMRDALSLTDQAIAFG----SGQLQEAAVRQM 245 (618)
T ss_pred -CHHHHHHHHHHHHHhc----CCCcCHHHHHHH
Confidence 7888888887766542 345776665543
No 89
>PRK08084 DNA replication initiation factor; Provisional
Probab=99.65 E-value=4.9e-15 Score=149.76 Aligned_cols=206 Identities=14% Similarity=0.137 Sum_probs=136.1
Q ss_pred CCccccccc-C-ChHHHHHHHHHHHHhcChhHHhhcCCCCCCceEEeCCCCChHHHHHHHHHHhc---CCCeeeechhhh
Q 007575 327 DTITFADVA-G-VDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEA---EVPFISCSASEF 401 (597)
Q Consensus 327 ~~vtf~dV~-G-~de~k~~L~eiv~~l~~p~~~~~lg~~~p~gVLL~GPPGTGKT~LArAIA~el---~~pfi~is~sef 401 (597)
+..+|++.+ | ...+...++.+.. . ..+..++|+||||||||+|+++++.++ +..+.+++..++
T Consensus 17 ~~~~fd~f~~~~n~~a~~~l~~~~~---~---------~~~~~l~l~Gp~G~GKThLl~a~~~~~~~~~~~v~y~~~~~~ 84 (235)
T PRK08084 17 DDETFASFYPGDNDSLLAALQNALR---Q---------EHSGYIYLWSREGAGRSHLLHAACAELSQRGRAVGYVPLDKR 84 (235)
T ss_pred CcCCccccccCccHHHHHHHHHHHh---C---------CCCCeEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEEHHHH
Confidence 456788877 4 3444444444432 1 122479999999999999999999875 344555555543
Q ss_pred HHHHhhcchHHHHHHHHHHHhcCCeEEEEcCcchhhhhcCCcccccchhHHHHHHHHHHHHhcCCCCCCc-EEEEEecCC
Q 007575 402 VELYVGMGASRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSA-VIVLGATNR 480 (597)
Q Consensus 402 ~~~~vG~~e~~vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~eqtLnqLL~emdg~~~~~~-VIVIaaTNr 480 (597)
... ..++++.... ..+|+|||+|.+..+. ..+..+-.++..+- ...+ .+|+++++.
T Consensus 85 ~~~--------~~~~~~~~~~--~dlliiDdi~~~~~~~----------~~~~~lf~l~n~~~---e~g~~~li~ts~~~ 141 (235)
T PRK08084 85 AWF--------VPEVLEGMEQ--LSLVCIDNIECIAGDE----------LWEMAIFDLYNRIL---ESGRTRLLITGDRP 141 (235)
T ss_pred hhh--------hHHHHHHhhh--CCEEEEeChhhhcCCH----------HHHHHHHHHHHHHH---HcCCCeEEEeCCCC
Confidence 221 1122222222 2489999999885321 22333434443332 1222 456666666
Q ss_pred CCC---CChhhhCCCCcc--eEEEecCCCHHHHHHHHHHHHhcCCCCCCCCCCHHHHHHhCCCCCHHHHHHHHHHHHHHH
Q 007575 481 SDV---LDPALRRPGRFD--RVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTTGFTGADLANLVNEAALLA 555 (597)
Q Consensus 481 pd~---LD~aLlRpgRFd--~~I~v~~Pd~~eR~eILk~~l~~~~~~l~~dvdl~~LA~~t~G~SgaDL~~Lv~eAal~A 555 (597)
|.. +.+.|.+ |+. .++.+.+|+.+++.++++.++...++.+.+++ ++.|+++.+| +.+.+.++++.....+
T Consensus 142 p~~l~~~~~~L~S--Rl~~g~~~~l~~~~~~~~~~~l~~~a~~~~~~l~~~v-~~~L~~~~~~-d~r~l~~~l~~l~~~~ 217 (235)
T PRK08084 142 PRQLNLGLPDLAS--RLDWGQIYKLQPLSDEEKLQALQLRARLRGFELPEDV-GRFLLKRLDR-EMRTLFMTLDQLDRAS 217 (235)
T ss_pred hHHcCcccHHHHH--HHhCCceeeecCCCHHHHHHHHHHHHHHcCCCCCHHH-HHHHHHhhcC-CHHHHHHHHHHHHHHH
Confidence 655 5799998 774 78999999999999999998887788887775 8999999885 7889999999864343
Q ss_pred HhcCCCcccHHHHHHHH
Q 007575 556 GRLNKVVVEKIDFIHAV 572 (597)
Q Consensus 556 ~r~~~~~It~~d~~~Al 572 (597)
.. .+..||.+.+++++
T Consensus 218 l~-~~~~it~~~~k~~l 233 (235)
T PRK08084 218 IT-AQRKLTIPFVKEIL 233 (235)
T ss_pred Hh-cCCCCCHHHHHHHH
Confidence 33 34459988887765
No 90
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=99.65 E-value=5.2e-15 Score=154.74 Aligned_cols=204 Identities=20% Similarity=0.255 Sum_probs=133.1
Q ss_pred cCCCCcccccccCChHHHHHHHHHHHHhcChhHHhhcCCCCCCceEEeCCCCChHHHHHHHHHHhcCCCeeeechhhhHH
Q 007575 324 EQGDTITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFVE 403 (597)
Q Consensus 324 ~~~~~vtf~dV~G~de~k~~L~eiv~~l~~p~~~~~lg~~~p~gVLL~GPPGTGKT~LArAIA~el~~pfi~is~sef~~ 403 (597)
+...+.+|+|++|++++++.|...+.. ...|..+||+||||+|||++|++++++.+.+++.+++++ ..
T Consensus 13 ~kyrP~~~~~~~~~~~~~~~l~~~~~~-----------~~~~~~lll~G~~G~GKT~la~~l~~~~~~~~~~i~~~~-~~ 80 (316)
T PHA02544 13 QKYRPSTIDECILPAADKETFKSIVKK-----------GRIPNMLLHSPSPGTGKTTVAKALCNEVGAEVLFVNGSD-CR 80 (316)
T ss_pred eccCCCcHHHhcCcHHHHHHHHHHHhc-----------CCCCeEEEeeCcCCCCHHHHHHHHHHHhCccceEeccCc-cc
Confidence 344567899999999999998888751 234566777999999999999999999999999998876 11
Q ss_pred HHhhcchHHHHHHHHHHH-hcCCeEEEEcCcchhhhhcCCcccccchhHHHHHHHHHHHHhcCCCCCCcEEEEEecCCCC
Q 007575 404 LYVGMGASRVRDLFARAK-KEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATNRSD 482 (597)
Q Consensus 404 ~~vG~~e~~vr~lF~~A~-~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~eqtLnqLL~emdg~~~~~~VIVIaaTNrpd 482 (597)
+......+.+...... ...++||+|||+|.+... . ..+.|...|+... .++.+|.+||.++
T Consensus 81 --~~~i~~~l~~~~~~~~~~~~~~vliiDe~d~l~~~-----------~---~~~~L~~~le~~~--~~~~~Ilt~n~~~ 142 (316)
T PHA02544 81 --IDFVRNRLTRFASTVSLTGGGKVIIIDEFDRLGLA-----------D---AQRHLRSFMEAYS--KNCSFIITANNKN 142 (316)
T ss_pred --HHHHHHHHHHHHHhhcccCCCeEEEEECcccccCH-----------H---HHHHHHHHHHhcC--CCceEEEEcCChh
Confidence 1111111222111111 135789999999987321 1 1133444455433 3457778899999
Q ss_pred CCChhhhCCCCcceEEEecCCCHHHHHHHHHHHHh-------cCCCCCCCCCCHHHHHHhCCCCCHHHHHHHHHHHHHHH
Q 007575 483 VLDPALRRPGRFDRVVMVETPDKIGREAILKVHVS-------KKELPLAKDIDLGDIASMTTGFTGADLANLVNEAALLA 555 (597)
Q Consensus 483 ~LD~aLlRpgRFd~~I~v~~Pd~~eR~eILk~~l~-------~~~~~l~~dvdl~~LA~~t~G~SgaDL~~Lv~eAal~A 555 (597)
.+++++++ ||. .+.++.|+.+++.++++.++. +.+.++.++ .+..++....| |++.+++.....+
T Consensus 143 ~l~~~l~s--R~~-~i~~~~p~~~~~~~il~~~~~~~~~~~~~~~~~i~~~-al~~l~~~~~~----d~r~~l~~l~~~~ 214 (316)
T PHA02544 143 GIIEPLRS--RCR-VIDFGVPTKEEQIEMMKQMIVRCKGILEAEGVEVDMK-VLAALVKKNFP----DFRRTINELQRYA 214 (316)
T ss_pred hchHHHHh--hce-EEEeCCCCHHHHHHHHHHHHHHHHHHHHhcCCCCCHH-HHHHHHHhcCC----CHHHHHHHHHHHH
Confidence 99999998 885 789999999999877665433 234555443 25667765553 4555555444433
Q ss_pred HhcCCCcccHHHH
Q 007575 556 GRLNKVVVEKIDF 568 (597)
Q Consensus 556 ~r~~~~~It~~d~ 568 (597)
. ...++..++
T Consensus 215 ~---~~~i~~~~l 224 (316)
T PHA02544 215 S---TGKIDAGIL 224 (316)
T ss_pred c---cCCCCHHHH
Confidence 2 134555443
No 91
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=99.64 E-value=4.8e-15 Score=169.05 Aligned_cols=238 Identities=17% Similarity=0.157 Sum_probs=155.2
Q ss_pred cccccCChHHHHHHHHHHHHhcChhHHhhcCCCCCCceEEeCCCCChHHHHHHHHHHhc-------C---CCeeeechhh
Q 007575 331 FADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEA-------E---VPFISCSASE 400 (597)
Q Consensus 331 f~dV~G~de~k~~L~eiv~~l~~p~~~~~lg~~~p~gVLL~GPPGTGKT~LArAIA~el-------~---~pfi~is~se 400 (597)
-+.|+|.++..++|..++...-. |..+...++|+|+||||||++++.+..++ + +.+++++|..
T Consensus 754 PD~LPhREeEIeeLasfL~paIk-------gsgpnnvLYIyG~PGTGKTATVK~VLrELqeeaeqk~lp~f~vVYINCm~ 826 (1164)
T PTZ00112 754 PKYLPCREKEIKEVHGFLESGIK-------QSGSNQILYISGMPGTGKTATVYSVIQLLQHKTKQKLLPSFNVFEINGMN 826 (1164)
T ss_pred CCcCCChHHHHHHHHHHHHHHHh-------cCCCCceEEEECCCCCCHHHHHHHHHHHHHHHHhhccCCCceEEEEeCCc
Confidence 35678888888888777764221 12223335699999999999999998765 2 5578899854
Q ss_pred hHHH----------Hh------h-cchHHHHHHHHHHH--hcCCeEEEEcCcchhhhhcCCcccccchhHHHHHHHHHHH
Q 007575 401 FVEL----------YV------G-MGASRVRDLFARAK--KEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLT 461 (597)
Q Consensus 401 f~~~----------~v------G-~~e~~vr~lF~~A~--~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~eqtLnqLL~ 461 (597)
+... .. | .....+..+|.... ....+||+|||||.|.... ..+|..|+.
T Consensus 827 Lstp~sIYqvI~qqL~g~~P~~GlsS~evLerLF~~L~k~~r~v~IIILDEID~L~kK~------------QDVLYnLFR 894 (1164)
T PTZ00112 827 VVHPNAAYQVLYKQLFNKKPPNALNSFKILDRLFNQNKKDNRNVSILIIDEIDYLITKT------------QKVLFTLFD 894 (1164)
T ss_pred cCCHHHHHHHHHHHHcCCCCCccccHHHHHHHHHhhhhcccccceEEEeehHhhhCccH------------HHHHHHHHH
Confidence 3221 10 1 12234556666542 2335799999999997532 234555555
Q ss_pred HhcCCCCCCcEEEEEecCC---CCCCChhhhCCCCcce-EEEecCCCHHHHHHHHHHHHhcCCCCCCCCCCHHHHHHhCC
Q 007575 462 EMDGFDSNSAVIVLGATNR---SDVLDPALRRPGRFDR-VVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTT 537 (597)
Q Consensus 462 emdg~~~~~~VIVIaaTNr---pd~LD~aLlRpgRFd~-~I~v~~Pd~~eR~eILk~~l~~~~~~l~~dvdl~~LA~~t~ 537 (597)
... .....++||+++|. ++.|++.+.+ ||.. .+.|++++.+++.+||+..+......+.++ .++.+|+...
T Consensus 895 ~~~--~s~SKLiLIGISNdlDLperLdPRLRS--RLg~eeIvF~PYTaEQL~dILk~RAe~A~gVLdDd-AIELIArkVA 969 (1164)
T PTZ00112 895 WPT--KINSKLVLIAISNTMDLPERLIPRCRS--RLAFGRLVFSPYKGDEIEKIIKERLENCKEIIDHT-AIQLCARKVA 969 (1164)
T ss_pred Hhh--ccCCeEEEEEecCchhcchhhhhhhhh--ccccccccCCCCCHHHHHHHHHHHHHhCCCCCCHH-HHHHHHHhhh
Confidence 433 23467899999986 4667888887 5543 478899999999999999987532223333 3777777554
Q ss_pred CCCH--HHHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHhcccc-ccccccchhhhhhcc
Q 007575 538 GFTG--ADLANLVNEAALLAGRLNKVVVEKIDFIHAVERSIAVSL-SLSLSLSLQASISLN 595 (597)
Q Consensus 538 G~Sg--aDL~~Lv~eAal~A~r~~~~~It~~d~~~Al~~v~~g~~-k~s~~ls~q~~l~l~ 595 (597)
..+| +..-++|..|+.. .+...|+.+|+.+|++++..... ..-..++.+..++|-
T Consensus 970 q~SGDARKALDILRrAgEi---kegskVT~eHVrkAleeiE~srI~e~IktLPlHqKLVLl 1027 (1164)
T PTZ00112 970 NVSGDIRKALQICRKAFEN---KRGQKIVPRDITEATNQLFDSPLTNAINYLPWPFKMFLT 1027 (1164)
T ss_pred hcCCHHHHHHHHHHHHHhh---cCCCccCHHHHHHHHHHHHhhhHHHHHHcCCHHHHHHHH
Confidence 3332 4444566666654 34558999999999988765542 222457777777763
No 92
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=99.64 E-value=4.9e-15 Score=170.79 Aligned_cols=209 Identities=22% Similarity=0.308 Sum_probs=144.9
Q ss_pred cCCCCcccccccCChHHHHH---HHHHHHHhcChhHHhhcCCCCCCceEEeCCCCChHHHHHHHHHHhcCCCeeeechhh
Q 007575 324 EQGDTITFADVAGVDEAKEE---LEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASE 400 (597)
Q Consensus 324 ~~~~~vtf~dV~G~de~k~~---L~eiv~~l~~p~~~~~lg~~~p~gVLL~GPPGTGKT~LArAIA~el~~pfi~is~se 400 (597)
+...+-+|+|++|++.+... |..++. . ....++||+||||||||++|+++|+..+.+|+.+++..
T Consensus 20 ek~RP~tldd~vGQe~ii~~~~~L~~~i~---~---------~~~~slLL~GPpGtGKTTLA~aIA~~~~~~f~~lna~~ 87 (725)
T PRK13341 20 DRLRPRTLEEFVGQDHILGEGRLLRRAIK---A---------DRVGSLILYGPPGVGKTTLARIIANHTRAHFSSLNAVL 87 (725)
T ss_pred HhcCCCcHHHhcCcHHHhhhhHHHHHHHh---c---------CCCceEEEECCCCCCHHHHHHHHHHHhcCcceeehhhh
Confidence 34456789999999998754 444443 1 12347999999999999999999999999999888753
Q ss_pred hHHHHhhcchHHHHHHHHHHH-----hcCCeEEEEcCcchhhhhcCCcccccchhHHHHHHHHHHHHhcCCCCCCcEEEE
Q 007575 401 FVELYVGMGASRVRDLFARAK-----KEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVL 475 (597)
Q Consensus 401 f~~~~vG~~e~~vr~lF~~A~-----~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~eqtLnqLL~emdg~~~~~~VIVI 475 (597)
. +.+.+++.+..+. .....||||||||.+.... .+.|+..++ ...+++|
T Consensus 88 ~-------~i~dir~~i~~a~~~l~~~~~~~IL~IDEIh~Ln~~q---------------QdaLL~~lE----~g~IiLI 141 (725)
T PRK13341 88 A-------GVKDLRAEVDRAKERLERHGKRTILFIDEVHRFNKAQ---------------QDALLPWVE----NGTITLI 141 (725)
T ss_pred h-------hhHHHHHHHHHHHHHhhhcCCceEEEEeChhhCCHHH---------------HHHHHHHhc----CceEEEE
Confidence 1 1223444444432 1345699999999985432 245666665 2457777
Q ss_pred EecCC--CCCCChhhhCCCCcceEEEecCCCHHHHHHHHHHHHh-------cCCCCCCCCCCHHHHHHhCCCCCHHHHHH
Q 007575 476 GATNR--SDVLDPALRRPGRFDRVVMVETPDKIGREAILKVHVS-------KKELPLAKDIDLGDIASMTTGFTGADLAN 546 (597)
Q Consensus 476 aaTNr--pd~LD~aLlRpgRFd~~I~v~~Pd~~eR~eILk~~l~-------~~~~~l~~dvdl~~LA~~t~G~SgaDL~~ 546 (597)
++|+. ...+++++++ |. ..+.+++++.+++..+++..+. ..++.+.++ .++.|++...| ..+++.+
T Consensus 142 ~aTTenp~~~l~~aL~S--R~-~v~~l~pLs~edi~~IL~~~l~~~~~~~g~~~v~I~de-aL~~La~~s~G-D~R~lln 216 (725)
T PRK13341 142 GATTENPYFEVNKALVS--RS-RLFRLKSLSDEDLHQLLKRALQDKERGYGDRKVDLEPE-AEKHLVDVANG-DARSLLN 216 (725)
T ss_pred EecCCChHhhhhhHhhc--cc-cceecCCCCHHHHHHHHHHHHHHHHhhcCCcccCCCHH-HHHHHHHhCCC-CHHHHHH
Confidence 76643 3568899998 65 4689999999999999999886 233455444 37888888754 6788888
Q ss_pred HHHHHHHHHHhcC--CCcccHHHHHHHHHHH
Q 007575 547 LVNEAALLAGRLN--KVVVEKIDFIHAVERS 575 (597)
Q Consensus 547 Lv~eAal~A~r~~--~~~It~~d~~~Al~~v 575 (597)
+++.|+..+.... ...|+.+++++++.+.
T Consensus 217 ~Le~a~~~~~~~~~~~i~It~~~~~e~l~~~ 247 (725)
T PRK13341 217 ALELAVESTPPDEDGLIDITLAIAEESIQQR 247 (725)
T ss_pred HHHHHHHhcccCCCCceeccHHHHHHHHHHh
Confidence 8888775442222 2347888888877663
No 93
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.64 E-value=1e-14 Score=156.12 Aligned_cols=211 Identities=18% Similarity=0.251 Sum_probs=147.3
Q ss_pred CCCCcccccccCChHHHHHHHHHHHHhcChhHHhhcCCCCCCceEEeCCCCChHHHHHHHHHHhcCCCeeeechhhh---
Q 007575 325 QGDTITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEF--- 401 (597)
Q Consensus 325 ~~~~vtf~dV~G~de~k~~L~eiv~~l~~p~~~~~lg~~~p~gVLL~GPPGTGKT~LArAIA~el~~pfi~is~sef--- 401 (597)
...+.+|+|++|++++++.+...+.. .+.|.++|||||||+|||++|+++|.++..+.....+..+
T Consensus 10 k~rP~~~~~iig~~~~~~~l~~~i~~-----------~~~~~~~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~~~~~~ 78 (367)
T PRK14970 10 KYRPQTFDDVVGQSHITNTLLNAIEN-----------NHLAQALLFCGPRGVGKTTCARILARKINQPGYDDPNEDFSFN 78 (367)
T ss_pred HHCCCcHHhcCCcHHHHHHHHHHHHc-----------CCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCcc
Confidence 34568899999999998888877752 2456789999999999999999999987653221111100
Q ss_pred ---HHHHhhcchHHHHHHHHHHHh----cCCeEEEEcCcchhhhhcCCcccccchhHHHHHHHHHHHHhcCCCCCCcEEE
Q 007575 402 ---VELYVGMGASRVRDLFARAKK----EAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIV 474 (597)
Q Consensus 402 ---~~~~vG~~e~~vr~lF~~A~~----~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~eqtLnqLL~emdg~~~~~~VIV 474 (597)
.+.....+...++++++.+.. ..+.||+|||+|.+.. ..++.|+..++.. ....++
T Consensus 79 ~~~l~~~~~~~~~~i~~l~~~~~~~p~~~~~kiviIDE~~~l~~---------------~~~~~ll~~le~~--~~~~~~ 141 (367)
T PRK14970 79 IFELDAASNNSVDDIRNLIDQVRIPPQTGKYKIYIIDEVHMLSS---------------AAFNAFLKTLEEP--PAHAIF 141 (367)
T ss_pred eEEeccccCCCHHHHHHHHHHHhhccccCCcEEEEEeChhhcCH---------------HHHHHHHHHHhCC--CCceEE
Confidence 000011223567777776643 2356999999997742 2357788777652 334555
Q ss_pred EEecCCCCCCChhhhCCCCcceEEEecCCCHHHHHHHHHHHHhcCCCCCCCCCCHHHHHHhCCCCCHHHHHHHHHHHHHH
Q 007575 475 LGATNRSDVLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTTGFTGADLANLVNEAALL 554 (597)
Q Consensus 475 IaaTNrpd~LD~aLlRpgRFd~~I~v~~Pd~~eR~eILk~~l~~~~~~l~~dvdl~~LA~~t~G~SgaDL~~Lv~eAal~ 554 (597)
|.+|+.+..+.+++.+ |+. .+.+++|+.++...++...+.+.++.+.++ .++.|+..+.| +.+.+.+.++..+.+
T Consensus 142 Il~~~~~~kl~~~l~s--r~~-~v~~~~~~~~~l~~~l~~~~~~~g~~i~~~-al~~l~~~~~g-dlr~~~~~lekl~~y 216 (367)
T PRK14970 142 ILATTEKHKIIPTILS--RCQ-IFDFKRITIKDIKEHLAGIAVKEGIKFEDD-ALHIIAQKADG-ALRDALSIFDRVVTF 216 (367)
T ss_pred EEEeCCcccCCHHHHh--cce-eEecCCccHHHHHHHHHHHHHHcCCCCCHH-HHHHHHHhCCC-CHHHHHHHHHHHHHh
Confidence 5667777888899987 664 789999999999999998888877777665 48888887764 667777777766655
Q ss_pred HHhcCCCcccHHHHHHHH
Q 007575 555 AGRLNKVVVEKIDFIHAV 572 (597)
Q Consensus 555 A~r~~~~~It~~d~~~Al 572 (597)
+ +.. |+.+++++.+
T Consensus 217 ~---~~~-it~~~v~~~~ 230 (367)
T PRK14970 217 C---GKN-ITRQAVTENL 230 (367)
T ss_pred c---CCC-CCHHHHHHHh
Confidence 4 222 7777766554
No 94
>PRK10865 protein disaggregation chaperone; Provisional
Probab=99.64 E-value=5.1e-15 Score=174.19 Aligned_cols=165 Identities=25% Similarity=0.366 Sum_probs=127.1
Q ss_pred CcccccccCChHHHHHHHHHHHHhcChhHHhhcCCCCCCceEEeCCCCChHHHHHHHHHHhc----------CCCeeeec
Q 007575 328 TITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEA----------EVPFISCS 397 (597)
Q Consensus 328 ~vtf~dV~G~de~k~~L~eiv~~l~~p~~~~~lg~~~p~gVLL~GPPGTGKT~LArAIA~el----------~~pfi~is 397 (597)
.-.+++++|.++..+.+.+++. . +...+++|+||||||||++|+++|..+ +.+++.++
T Consensus 174 ~~~l~~vigr~~ei~~~i~iL~---r---------~~~~n~lL~G~pGvGKT~l~~~la~~i~~~~vp~~l~~~~~~~l~ 241 (857)
T PRK10865 174 QGKLDPVIGRDEEIRRTIQVLQ---R---------RTKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLALD 241 (857)
T ss_pred cCCCCcCCCCHHHHHHHHHHHh---c---------CCcCceEEECCCCCCHHHHHHHHHHHhhcCCCchhhCCCEEEEEe
Confidence 4568899999986444444443 2 233479999999999999999999987 78889998
Q ss_pred hhhhH--HHHhhcchHHHHHHHHHHHh-cCCeEEEEcCcchhhhhcCCcccccchhHHHHHHHHHHHHhcCCCCCCcEEE
Q 007575 398 ASEFV--ELYVGMGASRVRDLFARAKK-EAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIV 474 (597)
Q Consensus 398 ~sef~--~~~vG~~e~~vr~lF~~A~~-~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~eqtLnqLL~emdg~~~~~~VIV 474 (597)
...++ ..|.|+.+++++.+|+.+.. ..++||||||||.|.+..... ++.+ .-|.|+..+ .++.+.+
T Consensus 242 l~~l~ag~~~~g~~e~~lk~~~~~~~~~~~~~ILfIDEih~l~~~~~~~---~~~d----~~~~lkp~l----~~g~l~~ 310 (857)
T PRK10865 242 MGALVAGAKYRGEFEERLKGVLNDLAKQEGNVILFIDELHTMVGAGKAD---GAMD----AGNMLKPAL----ARGELHC 310 (857)
T ss_pred hhhhhhccchhhhhHHHHHHHHHHHHHcCCCeEEEEecHHHhccCCCCc---cchh----HHHHhcchh----hcCCCeE
Confidence 88876 45889999999999998644 568999999999998654321 2222 123344333 3567999
Q ss_pred EEecCCCC-----CCChhhhCCCCcceEEEecCCCHHHHHHHHHHHHhc
Q 007575 475 LGATNRSD-----VLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSK 518 (597)
Q Consensus 475 IaaTNrpd-----~LD~aLlRpgRFd~~I~v~~Pd~~eR~eILk~~l~~ 518 (597)
|++|+..+ .+|+++.| ||+ .|.++.|+.+++..|++.+..+
T Consensus 311 IgaTt~~e~r~~~~~d~al~r--Rf~-~i~v~eP~~~~~~~iL~~l~~~ 356 (857)
T PRK10865 311 VGATTLDEYRQYIEKDAALER--RFQ-KVFVAEPSVEDTIAILRGLKER 356 (857)
T ss_pred EEcCCCHHHHHHhhhcHHHHh--hCC-EEEeCCCCHHHHHHHHHHHhhh
Confidence 99999876 48999999 998 6889999999999999877654
No 95
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.64 E-value=6.5e-15 Score=164.94 Aligned_cols=209 Identities=19% Similarity=0.260 Sum_probs=149.1
Q ss_pred CCcccccccCChHHHHHHHHHHHHhcChhHHhhcCCCCCCceEEeCCCCChHHHHHHHHHHhcCCCe-------eee-ch
Q 007575 327 DTITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPF-------ISC-SA 398 (597)
Q Consensus 327 ~~vtf~dV~G~de~k~~L~eiv~~l~~p~~~~~lg~~~p~gVLL~GPPGTGKT~LArAIA~el~~pf-------i~i-s~ 398 (597)
.+.+|+||+|++.+++.|...+.. .+.+..+||+||||+|||++|+++|+.+++.. -.| +|
T Consensus 11 rP~~f~divGq~~v~~~L~~~i~~-----------~~~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pcg~C~~C 79 (527)
T PRK14969 11 RPKSFSELVGQEHVVRALTNALEQ-----------QRLHHAYLFTGTRGVGKTTLARILAKSLNCETGVTATPCGVCSAC 79 (527)
T ss_pred CCCcHHHhcCcHHHHHHHHHHHHc-----------CCCCEEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHH
Confidence 457899999999999998888762 23456789999999999999999999986531 111 11
Q ss_pred hh--------hHHH--HhhcchHHHHHHHHHHHh----cCCeEEEEcCcchhhhhcCCcccccchhHHHHHHHHHHHHhc
Q 007575 399 SE--------FVEL--YVGMGASRVRDLFARAKK----EAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMD 464 (597)
Q Consensus 399 se--------f~~~--~vG~~e~~vr~lF~~A~~----~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~eqtLnqLL~emd 464 (597)
.. +.+. ....+...+|++.+.+.. ....|++|||+|.+.. ...|.||..|+
T Consensus 80 ~~i~~~~~~d~~ei~~~~~~~vd~ir~l~~~~~~~p~~~~~kVvIIDEad~ls~---------------~a~naLLK~LE 144 (527)
T PRK14969 80 LEIDSGRFVDLIEVDAASNTQVDAMRELLDNAQYAPTRGRFKVYIIDEVHMLSK---------------SAFNAMLKTLE 144 (527)
T ss_pred HHHhcCCCCceeEeeccccCCHHHHHHHHHHHhhCcccCCceEEEEcCcccCCH---------------HHHHHHHHHHh
Confidence 11 1000 001234557777776643 2346999999998853 24588999998
Q ss_pred CCCCCCcEEEEEecCCCCCCChhhhCCCCcceEEEecCCCHHHHHHHHHHHHhcCCCCCCCCCCHHHHHHhCCCCCHHHH
Q 007575 465 GFDSNSAVIVLGATNRSDVLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTTGFTGADL 544 (597)
Q Consensus 465 g~~~~~~VIVIaaTNrpd~LD~aLlRpgRFd~~I~v~~Pd~~eR~eILk~~l~~~~~~l~~dvdl~~LA~~t~G~SgaDL 544 (597)
. ....+++|.+|+.++.+.+.+++ |+ ..+.|..++.++..+.+...+.+.++...++ .+..|++.+.| +.+++
T Consensus 145 e--pp~~~~fIL~t~d~~kil~tI~S--Rc-~~~~f~~l~~~~i~~~L~~il~~egi~~~~~-al~~la~~s~G-slr~a 217 (527)
T PRK14969 145 E--PPEHVKFILATTDPQKIPVTVLS--RC-LQFNLKQMPPPLIVSHLQHILEQENIPFDAT-ALQLLARAAAG-SMRDA 217 (527)
T ss_pred C--CCCCEEEEEEeCChhhCchhHHH--HH-HHHhcCCCCHHHHHHHHHHHHHHcCCCCCHH-HHHHHHHHcCC-CHHHH
Confidence 5 33556777777778888878887 76 4889999999999999988887766665443 47788888765 78888
Q ss_pred HHHHHHHHHHHHhcCCCcccHHHHHHHH
Q 007575 545 ANLVNEAALLAGRLNKVVVEKIDFIHAV 572 (597)
Q Consensus 545 ~~Lv~eAal~A~r~~~~~It~~d~~~Al 572 (597)
.++++.|... +...|+.+++.+.+
T Consensus 218 l~lldqai~~----~~~~I~~~~v~~~~ 241 (527)
T PRK14969 218 LSLLDQAIAY----GGGTVNESEVRAML 241 (527)
T ss_pred HHHHHHHHHh----cCCCcCHHHHHHHH
Confidence 8888887654 34467777766544
No 96
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=99.63 E-value=9.5e-15 Score=160.78 Aligned_cols=222 Identities=14% Similarity=0.215 Sum_probs=143.2
Q ss_pred CcccccccCChHHHHHHHHHHHHhcChhHHhhcCCCCCCceEEeCCCCChHHHHHHHHHHhc-----CCCeeeechhhhH
Q 007575 328 TITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEA-----EVPFISCSASEFV 402 (597)
Q Consensus 328 ~vtf~dV~G~de~k~~L~eiv~~l~~p~~~~~lg~~~p~gVLL~GPPGTGKT~LArAIA~el-----~~pfi~is~sef~ 402 (597)
..+|++++-.+.....+..+......+ | ....+++|||++|+|||+|++|+++++ +..++++++.+|.
T Consensus 111 ~~tFdnFv~g~~n~~A~~aa~~~a~~~------~-~~~npl~i~G~~G~GKTHLl~Ai~~~l~~~~~~~~v~yv~~~~f~ 183 (450)
T PRK14087 111 ENTFENFVIGSSNEQAFIAVQTVSKNP------G-ISYNPLFIYGESGMGKTHLLKAAKNYIESNFSDLKVSYMSGDEFA 183 (450)
T ss_pred ccchhcccCCCcHHHHHHHHHHHHhCc------C-cccCceEEECCCCCcHHHHHHHHHHHHHHhCCCCeEEEEEHHHHH
Confidence 478988774443333333222222322 1 123469999999999999999999854 5788899999988
Q ss_pred HHHhhcchH---HHHHHHHHHHhcCCeEEEEcCcchhhhhcCCcccccchhHHHHHHHHHHHHhcCCCCCCcEEEEEecC
Q 007575 403 ELYVGMGAS---RVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATN 479 (597)
Q Consensus 403 ~~~vG~~e~---~vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~eqtLnqLL~emdg~~~~~~VIVIaaTN 479 (597)
..+...-.. .+.++.+.. ..+.+|+|||++.+..+. .+...|+..++......+.+||++..
T Consensus 184 ~~~~~~l~~~~~~~~~~~~~~--~~~dvLiIDDiq~l~~k~-------------~~~e~lf~l~N~~~~~~k~iIltsd~ 248 (450)
T PRK14087 184 RKAVDILQKTHKEIEQFKNEI--CQNDVLIIDDVQFLSYKE-------------KTNEIFFTIFNNFIENDKQLFFSSDK 248 (450)
T ss_pred HHHHHHHHHhhhHHHHHHHHh--ccCCEEEEeccccccCCH-------------HHHHHHHHHHHHHHHcCCcEEEECCC
Confidence 776543221 222222222 345699999999885321 12223333333222233345555444
Q ss_pred CCC---CCChhhhCCCCc--ceEEEecCCCHHHHHHHHHHHHhcCCC--CCCCCCCHHHHHHhCCCCCHHHHHHHHHHHH
Q 007575 480 RSD---VLDPALRRPGRF--DRVVMVETPDKIGREAILKVHVSKKEL--PLAKDIDLGDIASMTTGFTGADLANLVNEAA 552 (597)
Q Consensus 480 rpd---~LD~aLlRpgRF--d~~I~v~~Pd~~eR~eILk~~l~~~~~--~l~~dvdl~~LA~~t~G~SgaDL~~Lv~eAa 552 (597)
.|. .+++.|.+ || ...+.+.+|+.++|.+|++.++...++ .+.++ .++.|+..+.| +.+.|.++|+.+.
T Consensus 249 ~P~~l~~l~~rL~S--R~~~Gl~~~L~~pd~e~r~~iL~~~~~~~gl~~~l~~e-vl~~Ia~~~~g-d~R~L~gaL~~l~ 324 (450)
T PRK14087 249 SPELLNGFDNRLIT--RFNMGLSIAIQKLDNKTATAIIKKEIKNQNIKQEVTEE-AINFISNYYSD-DVRKIKGSVSRLN 324 (450)
T ss_pred CHHHHhhccHHHHH--HHhCCceeccCCcCHHHHHHHHHHHHHhcCCCCCCCHH-HHHHHHHccCC-CHHHHHHHHHHHH
Confidence 453 45788988 77 467889999999999999999987654 34444 37888888876 7899999999987
Q ss_pred HHHHhcC-CCcccHHHHHHHHHHH
Q 007575 553 LLAGRLN-KVVVEKIDFIHAVERS 575 (597)
Q Consensus 553 l~A~r~~-~~~It~~d~~~Al~~v 575 (597)
..|.... ...|+.+.+.+++...
T Consensus 325 ~~a~~~~~~~~it~~~v~~~l~~~ 348 (450)
T PRK14087 325 FWSQQNPEEKIITIEIVSDLFRDI 348 (450)
T ss_pred HHHhcccCCCCCCHHHHHHHHhhc
Confidence 6665542 2456666666666554
No 97
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.62 E-value=1e-14 Score=164.39 Aligned_cols=205 Identities=20% Similarity=0.233 Sum_probs=146.0
Q ss_pred cCCCCcccccccCChHHHHHHHHHHHHhcChhHHhhcCCCCCCceEEeCCCCChHHHHHHHHHHhcCCC-----------
Q 007575 324 EQGDTITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVP----------- 392 (597)
Q Consensus 324 ~~~~~vtf~dV~G~de~k~~L~eiv~~l~~p~~~~~lg~~~p~gVLL~GPPGTGKT~LArAIA~el~~p----------- 392 (597)
....+.+|+||+|++.+++.|...+.. .+.+..+||+||||||||++|+++|+.+.+.
T Consensus 8 ~KyRP~sf~dIiGQe~v~~~L~~ai~~-----------~ri~ha~Lf~GPpG~GKTtiArilAk~L~C~~~~~~~pCg~C 76 (624)
T PRK14959 8 ARYRPQTFAEVAGQETVKAILSRAAQE-----------NRVAPAYLFSGTRGVGKTTIARIFAKALNCETAPTGEPCNTC 76 (624)
T ss_pred HHhCCCCHHHhcCCHHHHHHHHHHHHc-----------CCCCceEEEECCCCCCHHHHHHHHHHhccccCCCCCCCCccc
Confidence 344568899999999999999988862 2345679999999999999999999988653
Q ss_pred -------------eeeechhhhHHHHhhcchHHHHHHHHHHH----hcCCeEEEEcCcchhhhhcCCcccccchhHHHHH
Q 007575 393 -------------FISCSASEFVELYVGMGASRVRDLFARAK----KEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQT 455 (597)
Q Consensus 393 -------------fi~is~sef~~~~vG~~e~~vr~lF~~A~----~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~eqt 455 (597)
++.+++.. ..+...++.+.+.+. .....||||||+|.+.. ..
T Consensus 77 ~sC~~i~~g~hpDv~eId~a~------~~~Id~iR~L~~~~~~~p~~g~~kVIIIDEad~Lt~---------------~a 135 (624)
T PRK14959 77 EQCRKVTQGMHVDVVEIDGAS------NRGIDDAKRLKEAIGYAPMEGRYKVFIIDEAHMLTR---------------EA 135 (624)
T ss_pred HHHHHHhcCCCCceEEEeccc------ccCHHHHHHHHHHHHhhhhcCCceEEEEEChHhCCH---------------HH
Confidence 22222110 112234454433332 23356999999999852 24
Q ss_pred HHHHHHHhcCCCCCCcEEEEEecCCCCCCChhhhCCCCcceEEEecCCCHHHHHHHHHHHHhcCCCCCCCCCCHHHHHHh
Q 007575 456 LNQLLTEMDGFDSNSAVIVLGATNRSDVLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASM 535 (597)
Q Consensus 456 LnqLL~emdg~~~~~~VIVIaaTNrpd~LD~aLlRpgRFd~~I~v~~Pd~~eR~eILk~~l~~~~~~l~~dvdl~~LA~~ 535 (597)
.|.|+..|+. ....+++|.+|+.++.+.+.+++ |+. ++.|+.++.++..++|+..+.+.++.+.++ .++.|++.
T Consensus 136 ~naLLk~LEE--P~~~~ifILaTt~~~kll~TI~S--Rcq-~i~F~pLs~~eL~~~L~~il~~egi~id~e-al~lIA~~ 209 (624)
T PRK14959 136 FNALLKTLEE--PPARVTFVLATTEPHKFPVTIVS--RCQ-HFTFTRLSEAGLEAHLTKVLGREGVDYDPA-AVRLIARR 209 (624)
T ss_pred HHHHHHHhhc--cCCCEEEEEecCChhhhhHHHHh--hhh-ccccCCCCHHHHHHHHHHHHHHcCCCCCHH-HHHHHHHH
Confidence 5888988885 33467788888888888888888 774 789999999999999998887776666555 47888888
Q ss_pred CCCCCHHHHHHHHHHHHHHHHhcCCCcccHHHHHHH
Q 007575 536 TTGFTGADLANLVNEAALLAGRLNKVVVEKIDFIHA 571 (597)
Q Consensus 536 t~G~SgaDL~~Lv~eAal~A~r~~~~~It~~d~~~A 571 (597)
+.| +.+++.+++++++ + .+...|+.+++..+
T Consensus 210 s~G-dlR~Al~lLeqll--~--~g~~~It~d~V~~~ 240 (624)
T PRK14959 210 AAG-SVRDSMSLLGQVL--A--LGESRLTIDGARGV 240 (624)
T ss_pred cCC-CHHHHHHHHHHHH--H--hcCCCcCHHHHHHH
Confidence 865 5667777777553 2 24446777776544
No 98
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.62 E-value=1.3e-14 Score=162.22 Aligned_cols=209 Identities=20% Similarity=0.294 Sum_probs=146.6
Q ss_pred CCCcccccccCChHHHHHHHHHHHHhcChhHHhhcCCCCCCceEEeCCCCChHHHHHHHHHHhcCC-------Ceeee-c
Q 007575 326 GDTITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEV-------PFISC-S 397 (597)
Q Consensus 326 ~~~vtf~dV~G~de~k~~L~eiv~~l~~p~~~~~lg~~~p~gVLL~GPPGTGKT~LArAIA~el~~-------pfi~i-s 397 (597)
..+.+|+|++|++.+++.|...+.. .+.+..+||+||||+|||++|+++|..+++ |.-.| +
T Consensus 10 yRP~~f~diiGq~~~v~~L~~~i~~-----------~rl~ha~Lf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~C~s 78 (546)
T PRK14957 10 YRPQSFAEVAGQQHALNSLVHALET-----------QKVHHAYLFTGTRGVGKTTLGRLLAKCLNCKTGVTAEPCNKCEN 78 (546)
T ss_pred HCcCcHHHhcCcHHHHHHHHHHHHc-----------CCCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCcccHH
Confidence 3567899999999999988887752 234667899999999999999999998764 11111 1
Q ss_pred hh--------hhHHH--HhhcchHHHHHHHHHHHh----cCCeEEEEcCcchhhhhcCCcccccchhHHHHHHHHHHHHh
Q 007575 398 AS--------EFVEL--YVGMGASRVRDLFARAKK----EAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEM 463 (597)
Q Consensus 398 ~s--------ef~~~--~vG~~e~~vr~lF~~A~~----~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~eqtLnqLL~em 463 (597)
|. ++.+. ....+...++++++.+.. +...|++|||+|.+.. ...|.||..|
T Consensus 79 C~~i~~~~~~dlieidaas~~gvd~ir~ii~~~~~~p~~g~~kViIIDEa~~ls~---------------~a~naLLK~L 143 (546)
T PRK14957 79 CVAINNNSFIDLIEIDAASRTGVEETKEILDNIQYMPSQGRYKVYLIDEVHMLSK---------------QSFNALLKTL 143 (546)
T ss_pred HHHHhcCCCCceEEeecccccCHHHHHHHHHHHHhhhhcCCcEEEEEechhhccH---------------HHHHHHHHHH
Confidence 11 11000 001123445666655542 3356999999998853 2457889988
Q ss_pred cCCCCCCcEEEEEecCCCCCCChhhhCCCCcceEEEecCCCHHHHHHHHHHHHhcCCCCCCCCCCHHHHHHhCCCCCHHH
Q 007575 464 DGFDSNSAVIVLGATNRSDVLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTTGFTGAD 543 (597)
Q Consensus 464 dg~~~~~~VIVIaaTNrpd~LD~aLlRpgRFd~~I~v~~Pd~~eR~eILk~~l~~~~~~l~~dvdl~~LA~~t~G~SgaD 543 (597)
+. ....+++|.+|+.+..+.+.+++ |+ ..+++.+++.++..+.++..+.+.++.+.++ .+..|+..+.| +.++
T Consensus 144 Ee--pp~~v~fIL~Ttd~~kil~tI~S--Rc-~~~~f~~Ls~~eI~~~L~~il~~egi~~e~~-Al~~Ia~~s~G-dlR~ 216 (546)
T PRK14957 144 EE--PPEYVKFILATTDYHKIPVTILS--RC-IQLHLKHISQADIKDQLKIILAKENINSDEQ-SLEYIAYHAKG-SLRD 216 (546)
T ss_pred hc--CCCCceEEEEECChhhhhhhHHH--he-eeEEeCCCCHHHHHHHHHHHHHHcCCCCCHH-HHHHHHHHcCC-CHHH
Confidence 85 33456666667778888888887 77 5899999999999999998887776665544 47788888864 7888
Q ss_pred HHHHHHHHHHHHHhcCCCcccHHHHHHH
Q 007575 544 LANLVNEAALLAGRLNKVVVEKIDFIHA 571 (597)
Q Consensus 544 L~~Lv~eAal~A~r~~~~~It~~d~~~A 571 (597)
+.++++.++..+ + ..|+.++++++
T Consensus 217 alnlLek~i~~~---~-~~It~~~V~~~ 240 (546)
T PRK14957 217 ALSLLDQAISFC---G-GELKQAQIKQM 240 (546)
T ss_pred HHHHHHHHHHhc---c-CCCCHHHHHHH
Confidence 888888777543 2 45777777764
No 99
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=99.62 E-value=1.1e-14 Score=171.51 Aligned_cols=203 Identities=22% Similarity=0.341 Sum_probs=147.1
Q ss_pred CCcccccccCChHHHHHHHHHHHHhcChhHHhhcCCCCCCceEEeCCCCChHHHHHHHHHHhc----------CCCeeee
Q 007575 327 DTITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEA----------EVPFISC 396 (597)
Q Consensus 327 ~~vtf~dV~G~de~k~~L~eiv~~l~~p~~~~~lg~~~p~gVLL~GPPGTGKT~LArAIA~el----------~~pfi~i 396 (597)
..-.++.++|.++..+.+.+++. .+...+++|+||||||||++|+++|..+ +.+++.+
T Consensus 168 ~~~~~~~~igr~~ei~~~~~~l~------------r~~~~n~lL~G~pGvGKT~l~~~la~~i~~~~~p~~l~~~~~~~l 235 (852)
T TIGR03346 168 REGKLDPVIGRDEEIRRTIQVLS------------RRTKNNPVLIGEPGVGKTAIVEGLAQRIVNGDVPESLKNKRLLAL 235 (852)
T ss_pred hCCCCCcCCCcHHHHHHHHHHHh------------cCCCCceEEEcCCCCCHHHHHHHHHHHHhccCCchhhcCCeEEEe
Confidence 34568889999987555544443 2234578999999999999999999875 6788888
Q ss_pred chhhhH--HHHhhcchHHHHHHHHHHHh-cCCeEEEEcCcchhhhhcCCcccccchhHHHHHHHHHHHHhcCCCCCCcEE
Q 007575 397 SASEFV--ELYVGMGASRVRDLFARAKK-EAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVI 473 (597)
Q Consensus 397 s~sef~--~~~vG~~e~~vr~lF~~A~~-~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~eqtLnqLL~emdg~~~~~~VI 473 (597)
+...++ ..|.|..+.+++.+|+.+.. ..|+||||||||.|.+..... +.. ...|.|...+ .+..+.
T Consensus 236 ~~~~l~a~~~~~g~~e~~l~~~l~~~~~~~~~~ILfIDEih~l~~~g~~~---~~~----d~~~~Lk~~l----~~g~i~ 304 (852)
T TIGR03346 236 DMGALIAGAKYRGEFEERLKAVLNEVTKSEGQIILFIDELHTLVGAGKAE---GAM----DAGNMLKPAL----ARGELH 304 (852)
T ss_pred eHHHHhhcchhhhhHHHHHHHHHHHHHhcCCCeEEEeccHHHhhcCCCCc---chh----HHHHHhchhh----hcCceE
Confidence 888776 46889999999999999865 458999999999997543211 111 1234444333 356799
Q ss_pred EEEecCCCC-----CCChhhhCCCCcceEEEecCCCHHHHHHHHHHHHhcCC----CCCCCCCCHHHHHHhCCCC-----
Q 007575 474 VLGATNRSD-----VLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKKE----LPLAKDIDLGDIASMTTGF----- 539 (597)
Q Consensus 474 VIaaTNrpd-----~LD~aLlRpgRFd~~I~v~~Pd~~eR~eILk~~l~~~~----~~l~~dvdl~~LA~~t~G~----- 539 (597)
+|++|+..+ .+|+++.| ||. .|.++.|+.+++.+|++.+..... +.+.+ ..+..++..+.+|
T Consensus 305 ~IgaTt~~e~r~~~~~d~al~r--Rf~-~i~v~~p~~~~~~~iL~~~~~~~e~~~~v~~~d-~~i~~~~~ls~~yi~~r~ 380 (852)
T TIGR03346 305 CIGATTLDEYRKYIEKDAALER--RFQ-PVFVDEPTVEDTISILRGLKERYEVHHGVRITD-PAIVAAATLSHRYITDRF 380 (852)
T ss_pred EEEeCcHHHHHHHhhcCHHHHh--cCC-EEEeCCCCHHHHHHHHHHHHHHhccccCCCCCH-HHHHHHHHhccccccccC
Confidence 999998874 47999999 997 689999999999999998765532 22222 2355666666554
Q ss_pred CHHHHHHHHHHHHHHHH
Q 007575 540 TGADLANLVNEAALLAG 556 (597)
Q Consensus 540 SgaDL~~Lv~eAal~A~ 556 (597)
-|.....++++|+..+.
T Consensus 381 lPdkAidlld~a~a~~~ 397 (852)
T TIGR03346 381 LPDKAIDLIDEAAARIR 397 (852)
T ss_pred CchHHHHHHHHHHHHHH
Confidence 34667788888876553
No 100
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=99.62 E-value=1e-14 Score=170.12 Aligned_cols=207 Identities=22% Similarity=0.178 Sum_probs=145.4
Q ss_pred CCCcccccccCChHHHHHHHHHHHHhcChhHHhhcCCCCCCceEEeCCCCChHHHHHHHHHHhcCCCee-----eechhh
Q 007575 326 GDTITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFI-----SCSASE 400 (597)
Q Consensus 326 ~~~vtf~dV~G~de~k~~L~eiv~~l~~p~~~~~lg~~~p~gVLL~GPPGTGKT~LArAIA~el~~pfi-----~is~se 400 (597)
....+|+||+|++.+++.|+..+.. .+.++.+||+||+|||||++|+.+|+.+++.-- +-.|..
T Consensus 9 yRP~~f~eiiGqe~v~~~L~~~i~~-----------~ri~Ha~Lf~Gp~G~GKTt~A~~lAr~L~C~~~~~~~pCg~C~s 77 (824)
T PRK07764 9 YRPATFAEVIGQEHVTEPLSTALDS-----------GRINHAYLFSGPRGCGKTSSARILARSLNCVEGPTSTPCGECDS 77 (824)
T ss_pred hCCCCHHHhcCcHHHHHHHHHHHHh-----------CCCCceEEEECCCCCCHHHHHHHHHHHhCcccCCCCCCCcccHH
Confidence 4567899999999999998888762 345667899999999999999999999875210 011111
Q ss_pred hHHHHhh---------------cchHHHHHHHHHHH----hcCCeEEEEcCcchhhhhcCCcccccchhHHHHHHHHHHH
Q 007575 401 FVELYVG---------------MGASRVRDLFARAK----KEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLT 461 (597)
Q Consensus 401 f~~~~vG---------------~~e~~vr~lF~~A~----~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~eqtLnqLL~ 461 (597)
...+..| .+...+|++.+.+. .....|+||||+|.|.. ...|.||.
T Consensus 78 C~~~~~g~~~~~dv~eidaas~~~Vd~iR~l~~~~~~~p~~~~~KV~IIDEad~lt~---------------~a~NaLLK 142 (824)
T PRK07764 78 CVALAPGGPGSLDVTEIDAASHGGVDDARELRERAFFAPAESRYKIFIIDEAHMVTP---------------QGFNALLK 142 (824)
T ss_pred HHHHHcCCCCCCcEEEecccccCCHHHHHHHHHHHHhchhcCCceEEEEechhhcCH---------------HHHHHHHH
Confidence 1111101 12345566544433 23456999999999853 34588999
Q ss_pred HhcCCCCCCcEEEEEecCCCCCCChhhhCCCCcceEEEecCCCHHHHHHHHHHHHhcCCCCCCCCCCHHHHHHhCCCCCH
Q 007575 462 EMDGFDSNSAVIVLGATNRSDVLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTTGFTG 541 (597)
Q Consensus 462 emdg~~~~~~VIVIaaTNrpd~LD~aLlRpgRFd~~I~v~~Pd~~eR~eILk~~l~~~~~~l~~dvdl~~LA~~t~G~Sg 541 (597)
.|+... ..+++|.+|+.++.|.+.|++ |+ .++.|..++.++..++|+..+.+.++.+.++ .+..|++.+.| +.
T Consensus 143 ~LEEpP--~~~~fIl~tt~~~kLl~TIrS--Rc-~~v~F~~l~~~~l~~~L~~il~~EGv~id~e-al~lLa~~sgG-dl 215 (824)
T PRK07764 143 IVEEPP--EHLKFIFATTEPDKVIGTIRS--RT-HHYPFRLVPPEVMRGYLERICAQEGVPVEPG-VLPLVIRAGGG-SV 215 (824)
T ss_pred HHhCCC--CCeEEEEEeCChhhhhHHHHh--he-eEEEeeCCCHHHHHHHHHHHHHHcCCCCCHH-HHHHHHHHcCC-CH
Confidence 998533 456777777888889899988 76 4889999999999999999988777665544 36777777765 77
Q ss_pred HHHHHHHHHHHHHHHhcCCCcccHHHH
Q 007575 542 ADLANLVNEAALLAGRLNKVVVEKIDF 568 (597)
Q Consensus 542 aDL~~Lv~eAal~A~r~~~~~It~~d~ 568 (597)
+++.++++..+..+ +...|+.+++
T Consensus 216 R~Al~eLEKLia~~---~~~~IT~e~V 239 (824)
T PRK07764 216 RDSLSVLDQLLAGA---GPEGVTYERA 239 (824)
T ss_pred HHHHHHHHHHHhhc---CCCCCCHHHH
Confidence 88888887765332 2344665543
No 101
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=99.62 E-value=1e-14 Score=146.15 Aligned_cols=203 Identities=21% Similarity=0.318 Sum_probs=129.1
Q ss_pred CCcccccccCChHHHHHHHHHHHHhcChhHHhhcCCCCCCceEEeCCCCChHHHHHHHHHHhc-----CCCeeeechhhh
Q 007575 327 DTITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEA-----EVPFISCSASEF 401 (597)
Q Consensus 327 ~~vtf~dV~G~de~k~~L~eiv~~l~~p~~~~~lg~~~p~gVLL~GPPGTGKT~LArAIA~el-----~~pfi~is~sef 401 (597)
++.||++.+-.+.-+..+.-+.....++. ..-..++||||+|+|||+|.+|+++++ +..++++++.+|
T Consensus 3 ~~~tFdnfv~g~~N~~a~~~~~~ia~~~~-------~~~~~l~l~G~~G~GKTHLL~Ai~~~~~~~~~~~~v~y~~~~~f 75 (219)
T PF00308_consen 3 PKYTFDNFVVGESNELAYAAAKAIAENPG-------ERYNPLFLYGPSGLGKTHLLQAIANEAQKQHPGKRVVYLSAEEF 75 (219)
T ss_dssp TT-SCCCS--TTTTHHHHHHHHHHHHSTT-------TSSSEEEEEESTTSSHHHHHHHHHHHHHHHCTTS-EEEEEHHHH
T ss_pred CCCccccCCcCCcHHHHHHHHHHHHhcCC-------CCCCceEEECCCCCCHHHHHHHHHHHHHhccccccceeecHHHH
Confidence 57899998644433333332222222221 122358999999999999999998874 677899999999
Q ss_pred HHHHhhcchH-HHHHHHHHHHhcCCeEEEEcCcchhhhhcCCcccccchhHHHHHHHHHHHHhcCCCCCCcEEEEEecCC
Q 007575 402 VELYVGMGAS-RVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATNR 480 (597)
Q Consensus 402 ~~~~vG~~e~-~vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~eqtLnqLL~emdg~~~~~~VIVIaaTNr 480 (597)
...+...... .+.++.+..+ ...+|+||++|.+..+. .+...|+..++.+....+.+|+++...
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~--~~DlL~iDDi~~l~~~~-------------~~q~~lf~l~n~~~~~~k~li~ts~~~ 140 (219)
T PF00308_consen 76 IREFADALRDGEIEEFKDRLR--SADLLIIDDIQFLAGKQ-------------RTQEELFHLFNRLIESGKQLILTSDRP 140 (219)
T ss_dssp HHHHHHHHHTTSHHHHHHHHC--TSSEEEEETGGGGTTHH-------------HHHHHHHHHHHHHHHTTSEEEEEESS-
T ss_pred HHHHHHHHHcccchhhhhhhh--cCCEEEEecchhhcCch-------------HHHHHHHHHHHHHHhhCCeEEEEeCCC
Confidence 8776543222 2233333222 34599999999986432 122333333333333455677777777
Q ss_pred CCC---CChhhhCCCCc--ceEEEecCCCHHHHHHHHHHHHhcCCCCCCCCCCHHHHHHhCCCCCHHHHHHHHHHHHHHH
Q 007575 481 SDV---LDPALRRPGRF--DRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTTGFTGADLANLVNEAALLA 555 (597)
Q Consensus 481 pd~---LD~aLlRpgRF--d~~I~v~~Pd~~eR~eILk~~l~~~~~~l~~dvdl~~LA~~t~G~SgaDL~~Lv~eAal~A 555 (597)
|.. +++.|.+ || ...+.+..|+.+.|.+|++..+...++.+.+++ ++.|+.... -+.++|..+++.....+
T Consensus 141 P~~l~~~~~~L~S--Rl~~Gl~~~l~~pd~~~r~~il~~~a~~~~~~l~~~v-~~~l~~~~~-~~~r~L~~~l~~l~~~~ 216 (219)
T PF00308_consen 141 PSELSGLLPDLRS--RLSWGLVVELQPPDDEDRRRILQKKAKERGIELPEEV-IEYLARRFR-RDVRELEGALNRLDAYA 216 (219)
T ss_dssp TTTTTTS-HHHHH--HHHCSEEEEE----HHHHHHHHHHHHHHTT--S-HHH-HHHHHHHTT-SSHHHHHHHHHHHHHHH
T ss_pred CccccccChhhhh--hHhhcchhhcCCCCHHHHHHHHHHHHHHhCCCCcHHH-HHHHHHhhc-CCHHHHHHHHHHHHHHh
Confidence 755 4688887 76 458899999999999999999999999988775 888888886 48899999999877665
No 102
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.62 E-value=1.4e-14 Score=163.45 Aligned_cols=210 Identities=20% Similarity=0.193 Sum_probs=148.2
Q ss_pred CCCcccccccCChHHHHHHHHHHHHhcChhHHhhcCCCCCCceEEeCCCCChHHHHHHHHHHhcCCC-------eeee-c
Q 007575 326 GDTITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVP-------FISC-S 397 (597)
Q Consensus 326 ~~~vtf~dV~G~de~k~~L~eiv~~l~~p~~~~~lg~~~p~gVLL~GPPGTGKT~LArAIA~el~~p-------fi~i-s 397 (597)
..+-+|+||+|++.+++.|+..+.. .+.+..+||+||+|||||++|+++|+.+++. .-.| +
T Consensus 7 yRP~~f~eivGq~~i~~~L~~~i~~-----------~r~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~C~~ 75 (584)
T PRK14952 7 YRPATFAEVVGQEHVTEPLSSALDA-----------GRINHAYLFSGPRGCGKTSSARILARSLNCAQGPTATPCGVCES 75 (584)
T ss_pred hCCCcHHHhcCcHHHHHHHHHHHHc-----------CCCCeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCcccccHH
Confidence 3567899999999999998888762 3456678999999999999999999987642 1111 1
Q ss_pred hhhhH----------HHH--hhcchHHHHHHHHHHHh----cCCeEEEEcCcchhhhhcCCcccccchhHHHHHHHHHHH
Q 007575 398 ASEFV----------ELY--VGMGASRVRDLFARAKK----EAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLT 461 (597)
Q Consensus 398 ~sef~----------~~~--vG~~e~~vr~lF~~A~~----~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~eqtLnqLL~ 461 (597)
|-.+. +.- ...+...++++.+.+.. ....|++|||+|.+.. ...|.||.
T Consensus 76 C~~i~~~~~~~~dvieidaas~~gvd~iRel~~~~~~~P~~~~~KVvIIDEah~Lt~---------------~A~NALLK 140 (584)
T PRK14952 76 CVALAPNGPGSIDVVELDAASHGGVDDTRELRDRAFYAPAQSRYRIFIVDEAHMVTT---------------AGFNALLK 140 (584)
T ss_pred HHHhhcccCCCceEEEeccccccCHHHHHHHHHHHHhhhhcCCceEEEEECCCcCCH---------------HHHHHHHH
Confidence 11111 000 00134456666555532 2345999999999853 25588999
Q ss_pred HhcCCCCCCcEEEEEecCCCCCCChhhhCCCCcceEEEecCCCHHHHHHHHHHHHhcCCCCCCCCCCHHHHHHhCCCCCH
Q 007575 462 EMDGFDSNSAVIVLGATNRSDVLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTTGFTG 541 (597)
Q Consensus 462 emdg~~~~~~VIVIaaTNrpd~LD~aLlRpgRFd~~I~v~~Pd~~eR~eILk~~l~~~~~~l~~dvdl~~LA~~t~G~Sg 541 (597)
.|+. ....+++|.+|+.++.|.+.+++ |. .++.|..++.++..+.++..+.+.++.+.++ .+..+++... .+.
T Consensus 141 ~LEE--pp~~~~fIL~tte~~kll~TI~S--Rc-~~~~F~~l~~~~i~~~L~~i~~~egi~i~~~-al~~Ia~~s~-Gdl 213 (584)
T PRK14952 141 IVEE--PPEHLIFIFATTEPEKVLPTIRS--RT-HHYPFRLLPPRTMRALIARICEQEGVVVDDA-VYPLVIRAGG-GSP 213 (584)
T ss_pred HHhc--CCCCeEEEEEeCChHhhHHHHHH--hc-eEEEeeCCCHHHHHHHHHHHHHHcCCCCCHH-HHHHHHHHcC-CCH
Confidence 9984 44567778788888999999988 75 5899999999999999999888777666544 4677777665 478
Q ss_pred HHHHHHHHHHHHHHHhcCCCcccHHHHHHH
Q 007575 542 ADLANLVNEAALLAGRLNKVVVEKIDFIHA 571 (597)
Q Consensus 542 aDL~~Lv~eAal~A~r~~~~~It~~d~~~A 571 (597)
+++.++++.++..+ +...|+.+++...
T Consensus 214 R~aln~Ldql~~~~---~~~~It~~~v~~l 240 (584)
T PRK14952 214 RDTLSVLDQLLAGA---ADTHVTYQRALGL 240 (584)
T ss_pred HHHHHHHHHHHhcc---CCCCcCHHHHHHH
Confidence 88888888876543 2345666555443
No 103
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=99.61 E-value=1.8e-14 Score=164.58 Aligned_cols=211 Identities=21% Similarity=0.282 Sum_probs=152.7
Q ss_pred cCCCCcccccccCChHHHHHHHHHHHHhcChhHHhhcCCCCCCceEEeCCCCChHHHHHHHHHHhcCCCee---eechhh
Q 007575 324 EQGDTITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFI---SCSASE 400 (597)
Q Consensus 324 ~~~~~vtf~dV~G~de~k~~L~eiv~~l~~p~~~~~lg~~~p~gVLL~GPPGTGKT~LArAIA~el~~pfi---~is~se 400 (597)
...++.+|+||+|++.+++.|+..+.. .+.+..+||+||+|+|||++|+++|..+.++-- .-.|..
T Consensus 10 ~KyRP~~f~dIiGQe~~v~~L~~aI~~-----------~rl~HAYLF~GP~GtGKTt~AriLAk~LnC~~~~~~~~pC~~ 78 (725)
T PRK07133 10 RKYRPKTFDDIVGQDHIVQTLKNIIKS-----------NKISHAYLFSGPRGTGKTSVAKIFANALNCSHKTDLLEPCQE 78 (725)
T ss_pred HHhCCCCHHHhcCcHHHHHHHHHHHHc-----------CCCCeEEEEECCCCCcHHHHHHHHHHHhcccccCCCCCchhH
Confidence 344568899999999999999888862 245667999999999999999999998765321 011211
Q ss_pred hHH---H----H--hh---cchHHHHHHHHHHHh----cCCeEEEEcCcchhhhhcCCcccccchhHHHHHHHHHHHHhc
Q 007575 401 FVE---L----Y--VG---MGASRVRDLFARAKK----EAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMD 464 (597)
Q Consensus 401 f~~---~----~--vG---~~e~~vr~lF~~A~~----~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~eqtLnqLL~emd 464 (597)
... . + -+ .+...+|++.+.+.. +...|++|||+|.+.. ...+.||..|+
T Consensus 79 C~~~~~~~~Dvieidaasn~~vd~IReLie~~~~~P~~g~~KV~IIDEa~~LT~---------------~A~NALLKtLE 143 (725)
T PRK07133 79 CIENVNNSLDIIEMDAASNNGVDEIRELIENVKNLPTQSKYKIYIIDEVHMLSK---------------SAFNALLKTLE 143 (725)
T ss_pred HHHhhcCCCcEEEEeccccCCHHHHHHHHHHHHhchhcCCCEEEEEEChhhCCH---------------HHHHHHHHHhh
Confidence 111 0 0 01 234557888777654 3346999999998852 25688999998
Q ss_pred CCCCCCcEEEEEecCCCCCCChhhhCCCCcceEEEecCCCHHHHHHHHHHHHhcCCCCCCCCCCHHHHHHhCCCCCHHHH
Q 007575 465 GFDSNSAVIVLGATNRSDVLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTTGFTGADL 544 (597)
Q Consensus 465 g~~~~~~VIVIaaTNrpd~LD~aLlRpgRFd~~I~v~~Pd~~eR~eILk~~l~~~~~~l~~dvdl~~LA~~t~G~SgaDL 544 (597)
. ++..+++|.+|+.++.|.+.+++ |+. ++.|.+|+.++..+.++..+.+.++...++ .+..+|..+.| +.+++
T Consensus 144 E--PP~~tifILaTte~~KLl~TI~S--Rcq-~ieF~~L~~eeI~~~L~~il~kegI~id~e-Al~~LA~lS~G-slR~A 216 (725)
T PRK07133 144 E--PPKHVIFILATTEVHKIPLTILS--RVQ-RFNFRRISEDEIVSRLEFILEKENISYEKN-ALKLIAKLSSG-SLRDA 216 (725)
T ss_pred c--CCCceEEEEEcCChhhhhHHHHh--hce-eEEccCCCHHHHHHHHHHHHHHcCCCCCHH-HHHHHHHHcCC-CHHHH
Confidence 5 44567778888889999999988 775 899999999999999998887766655444 37788888875 67888
Q ss_pred HHHHHHHHHHHHhcCCCcccHHHHHHH
Q 007575 545 ANLVNEAALLAGRLNKVVVEKIDFIHA 571 (597)
Q Consensus 545 ~~Lv~eAal~A~r~~~~~It~~d~~~A 571 (597)
.++++.++..+ ...|+.+++.+.
T Consensus 217 lslLekl~~y~----~~~It~e~V~el 239 (725)
T PRK07133 217 LSIAEQVSIFG----NNKITLKNVEEL 239 (725)
T ss_pred HHHHHHHHHhc----cCCCCHHHHHHH
Confidence 88888766543 223777776654
No 104
>PRK08727 hypothetical protein; Validated
Probab=99.61 E-value=3.1e-14 Score=143.74 Aligned_cols=210 Identities=20% Similarity=0.221 Sum_probs=137.5
Q ss_pred CCCcccccccCChHHHHHHHHHHHHhcChhHHhhcCCCCCCceEEeCCCCChHHHHHHHHHHhc---CCCeeeechhhhH
Q 007575 326 GDTITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEA---EVPFISCSASEFV 402 (597)
Q Consensus 326 ~~~vtf~dV~G~de~k~~L~eiv~~l~~p~~~~~lg~~~p~gVLL~GPPGTGKT~LArAIA~el---~~pfi~is~sef~ 402 (597)
.+..+|++.++.+.. .+..+..... + .....++|+||+|||||+|++|++.++ +...++++..++.
T Consensus 13 ~~~~~f~~f~~~~~n--~~~~~~~~~~--------~-~~~~~l~l~G~~G~GKThL~~a~~~~~~~~~~~~~y~~~~~~~ 81 (233)
T PRK08727 13 PSDQRFDSYIAAPDG--LLAQLQALAA--------G-QSSDWLYLSGPAGTGKTHLALALCAAAEQAGRSSAYLPLQAAA 81 (233)
T ss_pred CCcCChhhccCCcHH--HHHHHHHHHh--------c-cCCCeEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEeHHHhh
Confidence 356789998866653 2222211111 1 123459999999999999999997764 6677777766643
Q ss_pred HHHhhcchHHHHHHHHHHHhcCCeEEEEcCcchhhhhcCCcccccchhHHHHHHHHHHHHhcCCCCCCcEEEEEecCCCC
Q 007575 403 ELYVGMGASRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATNRSD 482 (597)
Q Consensus 403 ~~~vG~~e~~vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~eqtLnqLL~emdg~~~~~~VIVIaaTNrpd 482 (597)
.. +.+.++... ...+|+|||+|.+.... ..+..+-.++..+. ....-+|+++...|.
T Consensus 82 ~~--------~~~~~~~l~--~~dlLiIDDi~~l~~~~----------~~~~~lf~l~n~~~---~~~~~vI~ts~~~p~ 138 (233)
T PRK08727 82 GR--------LRDALEALE--GRSLVALDGLESIAGQR----------EDEVALFDFHNRAR---AAGITLLYTARQMPD 138 (233)
T ss_pred hh--------HHHHHHHHh--cCCEEEEeCcccccCCh----------HHHHHHHHHHHHHH---HcCCeEEEECCCChh
Confidence 32 233444333 34599999999875332 11223334444432 222235555555666
Q ss_pred CC---ChhhhCCCCc--ceEEEecCCCHHHHHHHHHHHHhcCCCCCCCCCCHHHHHHhCCCCCHHHHHHHHHHHHHHHHh
Q 007575 483 VL---DPALRRPGRF--DRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTTGFTGADLANLVNEAALLAGR 557 (597)
Q Consensus 483 ~L---D~aLlRpgRF--d~~I~v~~Pd~~eR~eILk~~l~~~~~~l~~dvdl~~LA~~t~G~SgaDL~~Lv~eAal~A~r 557 (597)
.+ +++|.+ || ...+.+++|+.+++.+|++.++...++.+.+++ ++.|++++.| +.+.+.++++.....+..
T Consensus 139 ~l~~~~~dL~S--Rl~~~~~~~l~~~~~e~~~~iL~~~a~~~~l~l~~e~-~~~La~~~~r-d~r~~l~~L~~l~~~~~~ 214 (233)
T PRK08727 139 GLALVLPDLRS--RLAQCIRIGLPVLDDVARAAVLRERAQRRGLALDEAA-IDWLLTHGER-ELAGLVALLDRLDRESLA 214 (233)
T ss_pred hhhhhhHHHHH--HHhcCceEEecCCCHHHHHHHHHHHHHHcCCCCCHHH-HHHHHHhCCC-CHHHHHHHHHHHHHHHHH
Confidence 54 799988 76 568899999999999999998877777777664 8899998874 566777777766544444
Q ss_pred cCCCcccHHHHHHHHHH
Q 007575 558 LNKVVVEKIDFIHAVER 574 (597)
Q Consensus 558 ~~~~~It~~d~~~Al~~ 574 (597)
.+ ..||...+++.+..
T Consensus 215 ~~-~~it~~~~~~~l~~ 230 (233)
T PRK08727 215 AK-RRVTVPFLRRVLEE 230 (233)
T ss_pred hC-CCCCHHHHHHHHhh
Confidence 44 46898888877653
No 105
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.61 E-value=1.6e-14 Score=163.39 Aligned_cols=209 Identities=19% Similarity=0.252 Sum_probs=150.5
Q ss_pred CCCcccccccCChHHHHHHHHHHHHhcChhHHhhcCCCCCCceEEeCCCCChHHHHHHHHHHhcCCCe-------eee-c
Q 007575 326 GDTITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPF-------ISC-S 397 (597)
Q Consensus 326 ~~~vtf~dV~G~de~k~~L~eiv~~l~~p~~~~~lg~~~p~gVLL~GPPGTGKT~LArAIA~el~~pf-------i~i-s 397 (597)
..+.+|+||+|++++++.|...+.. .+.+..+||+||+|+|||++|+++|+.+++.- -.| +
T Consensus 10 ~RP~~f~~iiGq~~v~~~L~~~i~~-----------~~~~hayLf~Gp~G~GKtt~A~~lak~l~c~~~~~~~~c~~c~~ 78 (576)
T PRK14965 10 YRPQTFSDLTGQEHVSRTLQNAIDT-----------GRVAHAFLFTGARGVGKTSTARILAKALNCEQGLTAEPCNVCPP 78 (576)
T ss_pred hCCCCHHHccCcHHHHHHHHHHHHc-----------CCCCeEEEEECCCCCCHHHHHHHHHHhhcCCCCCCCCCCCccHH
Confidence 3467899999999999999888762 24567789999999999999999999976431 000 1
Q ss_pred hhh--------hHHH--HhhcchHHHHHHHHHHHhc----CCeEEEEcCcchhhhhcCCcccccchhHHHHHHHHHHHHh
Q 007575 398 ASE--------FVEL--YVGMGASRVRDLFARAKKE----APSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEM 463 (597)
Q Consensus 398 ~se--------f~~~--~vG~~e~~vr~lF~~A~~~----aP~ILfIDEIDaL~~~r~~~~~~~~~~e~eqtLnqLL~em 463 (597)
|.+ +.+. ....+...++++.+.+... ...|++|||+|.+.. ...|.|+..|
T Consensus 79 c~~i~~g~~~d~~eid~~s~~~v~~ir~l~~~~~~~p~~~~~KVvIIdev~~Lt~---------------~a~naLLk~L 143 (576)
T PRK14965 79 CVEITEGRSVDVFEIDGASNTGVDDIRELRENVKYLPSRSRYKIFIIDEVHMLST---------------NAFNALLKTL 143 (576)
T ss_pred HHHHhcCCCCCeeeeeccCccCHHHHHHHHHHHHhccccCCceEEEEEChhhCCH---------------HHHHHHHHHH
Confidence 111 1100 0012334677777666432 235999999998853 2458899999
Q ss_pred cCCCCCCcEEEEEecCCCCCCChhhhCCCCcceEEEecCCCHHHHHHHHHHHHhcCCCCCCCCCCHHHHHHhCCCCCHHH
Q 007575 464 DGFDSNSAVIVLGATNRSDVLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTTGFTGAD 543 (597)
Q Consensus 464 dg~~~~~~VIVIaaTNrpd~LD~aLlRpgRFd~~I~v~~Pd~~eR~eILk~~l~~~~~~l~~dvdl~~LA~~t~G~SgaD 543 (597)
+. +...+++|.+|+.++.|.+.+++ |+. ++.|..++.++....+...+.+.++.+.++ .+..|++.+.| +.++
T Consensus 144 Ee--pp~~~~fIl~t~~~~kl~~tI~S--Rc~-~~~f~~l~~~~i~~~L~~i~~~egi~i~~~-al~~la~~a~G-~lr~ 216 (576)
T PRK14965 144 EE--PPPHVKFIFATTEPHKVPITILS--RCQ-RFDFRRIPLQKIVDRLRYIADQEGISISDA-ALALVARKGDG-SMRD 216 (576)
T ss_pred Hc--CCCCeEEEEEeCChhhhhHHHHH--hhh-hhhcCCCCHHHHHHHHHHHHHHhCCCCCHH-HHHHHHHHcCC-CHHH
Confidence 84 44567788888888999999988 764 789999999999999998888777777655 48888888876 6778
Q ss_pred HHHHHHHHHHHHHhcCCCcccHHHHHHH
Q 007575 544 LANLVNEAALLAGRLNKVVVEKIDFIHA 571 (597)
Q Consensus 544 L~~Lv~eAal~A~r~~~~~It~~d~~~A 571 (597)
+.++++.+...+. ..|+.+|+...
T Consensus 217 al~~Ldqliay~g----~~It~edV~~l 240 (576)
T PRK14965 217 SLSTLDQVLAFCG----DAVGDDDVAEL 240 (576)
T ss_pred HHHHHHHHHHhcc----CCCCHHHHHHH
Confidence 8888877665542 24777766543
No 106
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=99.61 E-value=1.8e-14 Score=161.76 Aligned_cols=210 Identities=18% Similarity=0.250 Sum_probs=149.1
Q ss_pred CCCCcccccccCChHHHHHHHHHHHHhcChhHHhhcCCCCCCceEEeCCCCChHHHHHHHHHHhcCCCe-----eeechh
Q 007575 325 QGDTITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPF-----ISCSAS 399 (597)
Q Consensus 325 ~~~~vtf~dV~G~de~k~~L~eiv~~l~~p~~~~~lg~~~p~gVLL~GPPGTGKT~LArAIA~el~~pf-----i~is~s 399 (597)
...+.+|++++|++.+++.|...+. ..+.++++||+||||+|||++|+++|..+.+.- .+-.|.
T Consensus 9 KyRP~~F~dIIGQe~iv~~L~~aI~-----------~~rl~hA~Lf~GP~GvGKTTlA~~lAk~L~C~~~~~~~~Cg~C~ 77 (605)
T PRK05896 9 KYRPHNFKQIIGQELIKKILVNAIL-----------NNKLTHAYIFSGPRGIGKTSIAKIFAKAINCLNPKDGDCCNSCS 77 (605)
T ss_pred HhCCCCHHHhcCcHHHHHHHHHHHH-----------cCCCCceEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCcccH
Confidence 3456789999999999988888764 234567899999999999999999999875310 011111
Q ss_pred -----------hhHHHH--hhcchHHHHHHHHHHHhc----CCeEEEEcCcchhhhhcCCcccccchhHHHHHHHHHHHH
Q 007575 400 -----------EFVELY--VGMGASRVRDLFARAKKE----APSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTE 462 (597)
Q Consensus 400 -----------ef~~~~--vG~~e~~vr~lF~~A~~~----aP~ILfIDEIDaL~~~r~~~~~~~~~~e~eqtLnqLL~e 462 (597)
++.+.- ...+...+|++.+.+... ...|++|||+|.+.. ...+.|+..
T Consensus 78 sCr~i~~~~h~DiieIdaas~igVd~IReIi~~~~~~P~~~~~KVIIIDEad~Lt~---------------~A~NaLLKt 142 (605)
T PRK05896 78 VCESINTNQSVDIVELDAASNNGVDEIRNIIDNINYLPTTFKYKVYIIDEAHMLST---------------SAWNALLKT 142 (605)
T ss_pred HHHHHHcCCCCceEEeccccccCHHHHHHHHHHHHhchhhCCcEEEEEechHhCCH---------------HHHHHHHHH
Confidence 111100 012334577777665532 235999999998842 234788888
Q ss_pred hcCCCCCCcEEEEEecCCCCCCChhhhCCCCcceEEEecCCCHHHHHHHHHHHHhcCCCCCCCCCCHHHHHHhCCCCCHH
Q 007575 463 MDGFDSNSAVIVLGATNRSDVLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTTGFTGA 542 (597)
Q Consensus 463 mdg~~~~~~VIVIaaTNrpd~LD~aLlRpgRFd~~I~v~~Pd~~eR~eILk~~l~~~~~~l~~dvdl~~LA~~t~G~Sga 542 (597)
|+. ++..+++|.+|+.++.+.+.+++ |+. .+.+.+|+.++....++..+.+.+..+.++ .+..++..+.| +.+
T Consensus 143 LEE--Pp~~tvfIL~Tt~~~KLl~TI~S--Rcq-~ieF~~Ls~~eL~~~L~~il~kegi~Is~e-al~~La~lS~G-dlR 215 (605)
T PRK05896 143 LEE--PPKHVVFIFATTEFQKIPLTIIS--RCQ-RYNFKKLNNSELQELLKSIAKKEKIKIEDN-AIDKIADLADG-SLR 215 (605)
T ss_pred HHh--CCCcEEEEEECCChHhhhHHHHh--hhh-hcccCCCCHHHHHHHHHHHHHHcCCCCCHH-HHHHHHHHcCC-cHH
Confidence 884 34467777788888999999988 775 789999999999999999888776666655 47788888875 678
Q ss_pred HHHHHHHHHHHHHHhcCCCcccHHHHHHH
Q 007575 543 DLANLVNEAALLAGRLNKVVVEKIDFIHA 571 (597)
Q Consensus 543 DL~~Lv~eAal~A~r~~~~~It~~d~~~A 571 (597)
++.++++.++..+ +. .|+.+++.+.
T Consensus 216 ~AlnlLekL~~y~---~~-~It~e~V~el 240 (605)
T PRK05896 216 DGLSILDQLSTFK---NS-EIDIEDINKT 240 (605)
T ss_pred HHHHHHHHHHhhc---CC-CCCHHHHHHH
Confidence 8888888765543 22 3777766653
No 107
>COG1224 TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription]
Probab=99.61 E-value=1.5e-14 Score=150.78 Aligned_cols=104 Identities=20% Similarity=0.235 Sum_probs=88.7
Q ss_pred EEEEEecCC------------CCCCChhhhCCCCcceEEEecCCCHHHHHHHHHHHHhcCCCCCCCCCCHHHHHHhCCCC
Q 007575 472 VIVLGATNR------------SDVLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTTGF 539 (597)
Q Consensus 472 VIVIaaTNr------------pd~LD~aLlRpgRFd~~I~v~~Pd~~eR~eILk~~l~~~~~~l~~dvdl~~LA~~t~G~ 539 (597)
-|||.|||+ |+-++..|+. |. ..|...+++.++.++|++..+...++.+.++ .++.|+..-..-
T Consensus 321 PIii~AtNRG~~kiRGTd~~sPhGIP~DlLD--Rl-lII~t~py~~~EireIi~iRa~ee~i~l~~~-Ale~L~~ig~et 396 (450)
T COG1224 321 PIIILATNRGMTKIRGTDIESPHGIPLDLLD--RL-LIISTRPYSREEIREIIRIRAKEEDIELSDD-ALEYLTDIGEET 396 (450)
T ss_pred cEEEEEcCCceeeecccCCcCCCCCCHhhhh--he-eEEecCCCCHHHHHHHHHHhhhhhccccCHH-HHHHHHhhchhh
Confidence 477788887 5667888877 66 3678888999999999999999888888776 489999888888
Q ss_pred CHHHHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHhccc
Q 007575 540 TGADLANLVNEAALLAGRLNKVVVEKIDFIHAVERSIAVS 579 (597)
Q Consensus 540 SgaDL~~Lv~eAal~A~r~~~~~It~~d~~~Al~~v~~g~ 579 (597)
|-+...+|+.-|.+.|.+++...|..+|+++|.+-++-..
T Consensus 397 SLRYa~qLL~pa~iiA~~rg~~~V~~~dVe~a~~lF~D~k 436 (450)
T COG1224 397 SLRYAVQLLTPASIIAKRRGSKRVEVEDVERAKELFLDVK 436 (450)
T ss_pred hHHHHHHhccHHHHHHHHhCCCeeehhHHHHHHHHHhhHH
Confidence 8899999999999999999999999999999988776433
No 108
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.60 E-value=1.5e-14 Score=156.86 Aligned_cols=216 Identities=15% Similarity=0.185 Sum_probs=149.5
Q ss_pred cCCCCcccccccCChHHHHHHHHHHHHhcChhHHhhcCCCCCCceEEeCCCCChHHHHHHHHHHhcCCCee---------
Q 007575 324 EQGDTITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFI--------- 394 (597)
Q Consensus 324 ~~~~~vtf~dV~G~de~k~~L~eiv~~l~~p~~~~~lg~~~p~gVLL~GPPGTGKT~LArAIA~el~~pfi--------- 394 (597)
+...+.+|++|+|++.+++.|+..+. ..+.|..+||+||||+|||++|+++|+++.+.-.
T Consensus 8 ~k~RP~~~~eiiGq~~~~~~L~~~~~-----------~~~~~ha~lf~Gp~G~GKtt~A~~~a~~l~c~~~~~~~~~~~~ 76 (397)
T PRK14955 8 RKYRPKKFADITAQEHITRTIQNSLR-----------MGRVGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDADYLQE 76 (397)
T ss_pred HhcCCCcHhhccChHHHHHHHHHHHH-----------hCCcceeEEEECCCCCCHHHHHHHHHHHhcCCCCcCccccccc
Confidence 34456789999999999998888776 2345778999999999999999999998866210
Q ss_pred -ee------chhhhHH-------HHhh---cchHHHHHHHHHHHh----cCCeEEEEcCcchhhhhcCCcccccchhHHH
Q 007575 395 -SC------SASEFVE-------LYVG---MGASRVRDLFARAKK----EAPSIIFIDEIDAVAKSRDGRFRIVSNDERE 453 (597)
Q Consensus 395 -~i------s~sef~~-------~~vG---~~e~~vr~lF~~A~~----~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~e 453 (597)
.- +|..+.. .+.+ .+...++++.+.+.. ....|++|||+|.+..
T Consensus 77 ~~~~c~~c~~c~~~~~~~~~n~~~~~~~~~~~id~Ir~l~~~~~~~p~~~~~kvvIIdea~~l~~--------------- 141 (397)
T PRK14955 77 VTEPCGECESCRDFDAGTSLNISEFDAASNNSVDDIRLLRENVRYGPQKGRYRVYIIDEVHMLSI--------------- 141 (397)
T ss_pred CCCCCCCCHHHHHHhcCCCCCeEeecccccCCHHHHHHHHHHHhhchhcCCeEEEEEeChhhCCH---------------
Confidence 00 1111110 0111 123566666655532 2235999999998853
Q ss_pred HHHHHHHHHhcCCCCCCcEEEEEecCCCCCCChhhhCCCCcceEEEecCCCHHHHHHHHHHHHhcCCCCCCCCCCHHHHH
Q 007575 454 QTLNQLLTEMDGFDSNSAVIVLGATNRSDVLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIA 533 (597)
Q Consensus 454 qtLnqLL~emdg~~~~~~VIVIaaTNrpd~LD~aLlRpgRFd~~I~v~~Pd~~eR~eILk~~l~~~~~~l~~dvdl~~LA 533 (597)
...+.|+..++.. ....++|.+|+.+..+.+.+.+ |+. .+.+.+++.++..+.++..+...+..+.++ .++.|+
T Consensus 142 ~~~~~LLk~LEep--~~~t~~Il~t~~~~kl~~tl~s--R~~-~v~f~~l~~~ei~~~l~~~~~~~g~~i~~~-al~~l~ 215 (397)
T PRK14955 142 AAFNAFLKTLEEP--PPHAIFIFATTELHKIPATIAS--RCQ-RFNFKRIPLEEIQQQLQGICEAEGISVDAD-ALQLIG 215 (397)
T ss_pred HHHHHHHHHHhcC--CCCeEEEEEeCChHHhHHHHHH--HHH-HhhcCCCCHHHHHHHHHHHHHHcCCCCCHH-HHHHHH
Confidence 2346788888743 3345555566667888888887 664 789999999999999998887766666655 478888
Q ss_pred HhCCCCCHHHHHHHHHHHHHHHHh-cCCCcccHHHHHHHH
Q 007575 534 SMTTGFTGADLANLVNEAALLAGR-LNKVVVEKIDFIHAV 572 (597)
Q Consensus 534 ~~t~G~SgaDL~~Lv~eAal~A~r-~~~~~It~~d~~~Al 572 (597)
..+.| +.+.+.+.++.+..++.. .....|+.+++++.+
T Consensus 216 ~~s~g-~lr~a~~~L~kl~~~~~~~~~~~~It~~~v~~~v 254 (397)
T PRK14955 216 RKAQG-SMRDAQSILDQVIAFSVESEGEGSIRYDKVAELL 254 (397)
T ss_pred HHcCC-CHHHHHHHHHHHHHhccccCCCCccCHHHHHHHH
Confidence 88865 677888888877766532 234578888776654
No 109
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.60 E-value=4.1e-14 Score=157.00 Aligned_cols=209 Identities=21% Similarity=0.254 Sum_probs=147.4
Q ss_pred CCCcccccccCChHHHHHHHHHHHHhcChhHHhhcCCCCCCceEEeCCCCChHHHHHHHHHHhcCC-------Ceee-ec
Q 007575 326 GDTITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEV-------PFIS-CS 397 (597)
Q Consensus 326 ~~~vtf~dV~G~de~k~~L~eiv~~l~~p~~~~~lg~~~p~gVLL~GPPGTGKT~LArAIA~el~~-------pfi~-is 397 (597)
..+.+|+|++|++.+.+.|...+.. .+.+..+||+||+|+|||++|+.+|..+++ |+-. .+
T Consensus 10 yRP~~f~diiGq~~i~~~L~~~i~~-----------~~i~hayLf~Gp~G~GKTtlAr~lAk~L~c~~~~~~~pc~~c~n 78 (486)
T PRK14953 10 YRPKFFKEVIGQEIVVRILKNAVKL-----------QRVSHAYIFAGPRGTGKTTIARILAKVLNCLNPQEGEPCGKCEN 78 (486)
T ss_pred hCCCcHHHccChHHHHHHHHHHHHc-----------CCCCeEEEEECCCCCCHHHHHHHHHHHhcCcCCCCCCCCCccHH
Confidence 3567899999999999988888752 234566899999999999999999998764 2211 12
Q ss_pred hhhhHH-----HH-----hhcchHHHHHHHHHHHh----cCCeEEEEcCcchhhhhcCCcccccchhHHHHHHHHHHHHh
Q 007575 398 ASEFVE-----LY-----VGMGASRVRDLFARAKK----EAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEM 463 (597)
Q Consensus 398 ~sef~~-----~~-----vG~~e~~vr~lF~~A~~----~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~eqtLnqLL~em 463 (597)
|..+.. .+ ...+...++.+.+.+.. ..+.|++|||+|.+.. ...|.|+..|
T Consensus 79 c~~i~~g~~~d~~eidaas~~gvd~ir~I~~~~~~~P~~~~~KVvIIDEad~Lt~---------------~a~naLLk~L 143 (486)
T PRK14953 79 CVEIDKGSFPDLIEIDAASNRGIDDIRALRDAVSYTPIKGKYKVYIIDEAHMLTK---------------EAFNALLKTL 143 (486)
T ss_pred HHHHhcCCCCcEEEEeCccCCCHHHHHHHHHHHHhCcccCCeeEEEEEChhhcCH---------------HHHHHHHHHH
Confidence 211111 00 01223445666655543 3356999999998752 2347788888
Q ss_pred cCCCCCCcEEEEEecCCCCCCChhhhCCCCcceEEEecCCCHHHHHHHHHHHHhcCCCCCCCCCCHHHHHHhCCCCCHHH
Q 007575 464 DGFDSNSAVIVLGATNRSDVLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTTGFTGAD 543 (597)
Q Consensus 464 dg~~~~~~VIVIaaTNrpd~LD~aLlRpgRFd~~I~v~~Pd~~eR~eILk~~l~~~~~~l~~dvdl~~LA~~t~G~SgaD 543 (597)
+.. +..+++|.+|+.++.+.+++.+ |+. .+.+.+|+.++..++++.++...++.+.++ .+..|+..+.| +.++
T Consensus 144 Eep--p~~~v~Il~tt~~~kl~~tI~S--Rc~-~i~f~~ls~~el~~~L~~i~k~egi~id~~-al~~La~~s~G-~lr~ 216 (486)
T PRK14953 144 EEP--PPRTIFILCTTEYDKIPPTILS--RCQ-RFIFSKPTKEQIKEYLKRICNEEKIEYEEK-ALDLLAQASEG-GMRD 216 (486)
T ss_pred hcC--CCCeEEEEEECCHHHHHHHHHH--hce-EEEcCCCCHHHHHHHHHHHHHHcCCCCCHH-HHHHHHHHcCC-CHHH
Confidence 743 3445666667778888889888 775 789999999999999999998877766554 47888888775 6788
Q ss_pred HHHHHHHHHHHHHhcCCCcccHHHHHHH
Q 007575 544 LANLVNEAALLAGRLNKVVVEKIDFIHA 571 (597)
Q Consensus 544 L~~Lv~eAal~A~r~~~~~It~~d~~~A 571 (597)
+.++++.++..+ ...||.++++++
T Consensus 217 al~~Ldkl~~~~----~~~It~~~V~~~ 240 (486)
T PRK14953 217 AASLLDQASTYG----EGKVTIKVVEEF 240 (486)
T ss_pred HHHHHHHHHHhc----CCCcCHHHHHHH
Confidence 888888776543 335777777664
No 110
>PRK05642 DNA replication initiation factor; Validated
Probab=99.60 E-value=5.6e-14 Score=142.03 Aligned_cols=211 Identities=17% Similarity=0.200 Sum_probs=140.6
Q ss_pred CCCcccccccCChHHHHHHHHHHHHh-cChhHHhhcCCCCCCceEEeCCCCChHHHHHHHHHHhc---CCCeeeechhhh
Q 007575 326 GDTITFADVAGVDEAKEELEEIVEFL-RSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEA---EVPFISCSASEF 401 (597)
Q Consensus 326 ~~~vtf~dV~G~de~k~~L~eiv~~l-~~p~~~~~lg~~~p~gVLL~GPPGTGKT~LArAIA~el---~~pfi~is~sef 401 (597)
.+..+|++.+.... ....+.+..+ ... +.....+++|+||+|+|||+|++|+++++ +..+++++..++
T Consensus 13 ~~~~tfdnF~~~~~--~~a~~~~~~~~~~~------~~~~~~~l~l~G~~G~GKTHLl~a~~~~~~~~~~~v~y~~~~~~ 84 (234)
T PRK05642 13 RDDATFANYYPGAN--AAALGYVERLCEAD------AGWTESLIYLWGKDGVGRSHLLQAACLRFEQRGEPAVYLPLAEL 84 (234)
T ss_pred CCcccccccCcCCh--HHHHHHHHHHhhcc------ccCCCCeEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEeeHHHH
Confidence 45678998873322 2222232221 111 11123678999999999999999998754 677888888887
Q ss_pred HHHHhhcchHHHHHHHHHHHhcCCeEEEEcCcchhhhhcCCcccccchhHHHHHHHHHHHHhcCCCCCCcEEEEEecCCC
Q 007575 402 VELYVGMGASRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATNRS 481 (597)
Q Consensus 402 ~~~~vG~~e~~vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~eqtLnqLL~emdg~~~~~~VIVIaaTNrp 481 (597)
.... ..+.+..... .+|+|||++.+..+.. .+ ..|+..++.+..+...+||+++..|
T Consensus 85 ~~~~--------~~~~~~~~~~--d~LiiDDi~~~~~~~~----------~~---~~Lf~l~n~~~~~g~~ilits~~~p 141 (234)
T PRK05642 85 LDRG--------PELLDNLEQY--ELVCLDDLDVIAGKAD----------WE---EALFHLFNRLRDSGRRLLLAASKSP 141 (234)
T ss_pred Hhhh--------HHHHHhhhhC--CEEEEechhhhcCChH----------HH---HHHHHHHHHHHhcCCEEEEeCCCCH
Confidence 6531 2233333322 4899999998753321 12 2344444433444567777777666
Q ss_pred CC---CChhhhCCCCc--ceEEEecCCCHHHHHHHHHHHHhcCCCCCCCCCCHHHHHHhCCCCCHHHHHHHHHHHHHHHH
Q 007575 482 DV---LDPALRRPGRF--DRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTTGFTGADLANLVNEAALLAG 556 (597)
Q Consensus 482 d~---LD~aLlRpgRF--d~~I~v~~Pd~~eR~eILk~~l~~~~~~l~~dvdl~~LA~~t~G~SgaDL~~Lv~eAal~A~ 556 (597)
.. ..++|.+ || ...+.+..|+.+++.++++..+...++.+.+++ ++.|+++..+ +.+.+.++++.....+.
T Consensus 142 ~~l~~~~~~L~S--Rl~~gl~~~l~~~~~e~~~~il~~ka~~~~~~l~~ev-~~~L~~~~~~-d~r~l~~~l~~l~~~~l 217 (234)
T PRK05642 142 RELPIKLPDLKS--RLTLALVFQMRGLSDEDKLRALQLRASRRGLHLTDEV-GHFILTRGTR-SMSALFDLLERLDQASL 217 (234)
T ss_pred HHcCccCccHHH--HHhcCeeeecCCCCHHHHHHHHHHHHHHcCCCCCHHH-HHHHHHhcCC-CHHHHHHHHHHHHHHHH
Confidence 43 3688988 77 467888999999999999977777677777664 8888888875 88899999988765444
Q ss_pred hcCCCcccHHHHHHHH
Q 007575 557 RLNKVVVEKIDFIHAV 572 (597)
Q Consensus 557 r~~~~~It~~d~~~Al 572 (597)
. .+..||..-+++++
T Consensus 218 ~-~~~~it~~~~~~~L 232 (234)
T PRK05642 218 Q-AQRKLTIPFLKETL 232 (234)
T ss_pred H-cCCcCCHHHHHHHh
Confidence 4 33558888777765
No 111
>PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional
Probab=99.60 E-value=2e-14 Score=156.42 Aligned_cols=219 Identities=27% Similarity=0.325 Sum_probs=138.3
Q ss_pred cccCChHHHHHHHHHHHH-hcChhHHhh---cCCCCCCceEEeCCCCChHHHHHHHHHHhcCCCeeeechhhhHH-HHhh
Q 007575 333 DVAGVDEAKEELEEIVEF-LRSPDKYIR---LGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFVE-LYVG 407 (597)
Q Consensus 333 dV~G~de~k~~L~eiv~~-l~~p~~~~~---lg~~~p~gVLL~GPPGTGKT~LArAIA~el~~pfi~is~sef~~-~~vG 407 (597)
.|+|++++++.|...+.. ++.-..... -......++||+||||||||++|+++|..+++||+.++++.+.+ .|+|
T Consensus 72 ~ViGq~~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~~~iLl~Gp~GtGKT~lAr~lA~~l~~pf~~id~~~l~~~gyvG 151 (412)
T PRK05342 72 YVIGQERAKKVLSVAVYNHYKRLRHGDKKDDDVELQKSNILLIGPTGSGKTLLAQTLARILDVPFAIADATTLTEAGYVG 151 (412)
T ss_pred HeeChHHHHHHHHHHHHHHHHhhhcccccccccccCCceEEEEcCCCCCHHHHHHHHHHHhCCCceecchhhcccCCccc
Confidence 389999999999776632 111100000 01123568999999999999999999999999999999988754 4777
Q ss_pred cchHH-HHHHHHHH----HhcCCeEEEEcCcchhhhhcCCcccccchhHHHHHHHHHHHHhcCCC-----------CCCc
Q 007575 408 MGASR-VRDLFARA----KKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFD-----------SNSA 471 (597)
Q Consensus 408 ~~e~~-vr~lF~~A----~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~eqtLnqLL~emdg~~-----------~~~~ 471 (597)
..... +..++..+ ....++||||||||.+..++.+. ....+-..+.+.+.||..|++-. +...
T Consensus 152 ~d~e~~l~~l~~~~~~~~~~a~~gIi~iDEIdkl~~~~~~~-~~~~d~s~~~vQ~~LL~~Leg~~~~v~~~gg~~~~~~~ 230 (412)
T PRK05342 152 EDVENILLKLLQAADYDVEKAQRGIVYIDEIDKIARKSENP-SITRDVSGEGVQQALLKILEGTVASVPPQGGRKHPQQE 230 (412)
T ss_pred chHHHHHHHHHHhccccHHHcCCcEEEEechhhhccccCCC-CcCCCcccHHHHHHHHHHHhcCeEEeCCCCCcCcCCCC
Confidence 65433 34444332 23467899999999998764321 01111122456788888887531 1123
Q ss_pred EEEEEecCCCC----------------------------------------------------CCChhhhCCCCcceEEE
Q 007575 472 VIVLGATNRSD----------------------------------------------------VLDPALRRPGRFDRVVM 499 (597)
Q Consensus 472 VIVIaaTNrpd----------------------------------------------------~LD~aLlRpgRFd~~I~ 499 (597)
.++|.|+|... -+.|+++ ||+|.++.
T Consensus 231 ~~~i~t~nilfi~~Gaf~g~~~~~~~r~~~~~~gf~~~~~~~~~~~~~~~~~~~~~~~dL~~~gf~PEfl--gRld~iv~ 308 (412)
T PRK05342 231 FIQVDTTNILFICGGAFDGLEKIIKQRLGKKGIGFGAEVKSKKEKRTEGELLKQVEPEDLIKFGLIPEFI--GRLPVVAT 308 (412)
T ss_pred eEEeccCCceeeecccccCcHHHHHHHHhhcccCCccccccccccchhHHHHHhcCHHHHHHHhhhHHHh--CCCCeeee
Confidence 56666666510 0234444 49999999
Q ss_pred ecCCCHHHHHHHHHH----HH-------hcCCCCC--CCCCCHHHHHHh--CCCCCHHHHHHHHHHHHHHH
Q 007575 500 VETPDKIGREAILKV----HV-------SKKELPL--AKDIDLGDIASM--TTGFTGADLANLVNEAALLA 555 (597)
Q Consensus 500 v~~Pd~~eR~eILk~----~l-------~~~~~~l--~~dvdl~~LA~~--t~G~SgaDL~~Lv~eAal~A 555 (597)
|.+.+.++..+|+.. .+ ...++.+ .++ -++.|++. ..++-.+.|+.+++....-.
T Consensus 309 f~~L~~~~L~~Il~~~~~~l~~q~~~~l~~~~i~L~~t~~-al~~Ia~~~~~~~~GAR~Lrriie~~l~~~ 378 (412)
T PRK05342 309 LEELDEEALVRILTEPKNALVKQYQKLFEMDGVELEFTDE-ALEAIAKKAIERKTGARGLRSILEEILLDV 378 (412)
T ss_pred cCCCCHHHHHHHHHHHHHHHHHHHHHHHHhCCcEEEECHH-HHHHHHHhCCCCCCCCchHHHHHHHHhHHH
Confidence 999999999999873 22 2223322 222 26777765 33444567777776654433
No 112
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=99.60 E-value=4.3e-14 Score=159.28 Aligned_cols=209 Identities=18% Similarity=0.199 Sum_probs=150.1
Q ss_pred CCCcccccccCChHHHHHHHHHHHHhcChhHHhhcCCCCCCceEEeCCCCChHHHHHHHHHHhcCCC-------eeee-c
Q 007575 326 GDTITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVP-------FISC-S 397 (597)
Q Consensus 326 ~~~vtf~dV~G~de~k~~L~eiv~~l~~p~~~~~lg~~~p~gVLL~GPPGTGKT~LArAIA~el~~p-------fi~i-s 397 (597)
..+.+|+||+|++.+++.|+..+.. .+.+..+||+||||+|||++|+++|+.++++ .-.| +
T Consensus 10 yRP~~f~diiGqe~iv~~L~~~i~~-----------~~i~hayLf~Gp~G~GKTt~Ar~lAk~L~c~~~~~~~pC~~C~~ 78 (563)
T PRK06647 10 RRPRDFNSLEGQDFVVETLKHSIES-----------NKIANAYIFSGPRGVGKTSSARAFARCLNCVNGPTPMPCGECSS 78 (563)
T ss_pred hCCCCHHHccCcHHHHHHHHHHHHc-----------CCCCeEEEEECCCCCCHHHHHHHHHHhhccccCCCCCCCccchH
Confidence 3567899999999999998888862 2456679999999999999999999988652 2111 1
Q ss_pred hhhhHHH-------Hhh---cchHHHHHHHHHHHh----cCCeEEEEcCcchhhhhcCCcccccchhHHHHHHHHHHHHh
Q 007575 398 ASEFVEL-------YVG---MGASRVRDLFARAKK----EAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEM 463 (597)
Q Consensus 398 ~sef~~~-------~vG---~~e~~vr~lF~~A~~----~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~eqtLnqLL~em 463 (597)
|-.+... +-| .+...++++.+.+.. ....|++|||+|.+.. ...|.|+..|
T Consensus 79 C~~i~~~~~~dv~~idgas~~~vddIr~l~e~~~~~p~~~~~KVvIIDEa~~Ls~---------------~a~naLLK~L 143 (563)
T PRK06647 79 CKSIDNDNSLDVIEIDGASNTSVQDVRQIKEEIMFPPASSRYRVYIIDEVHMLSN---------------SAFNALLKTI 143 (563)
T ss_pred HHHHHcCCCCCeEEecCcccCCHHHHHHHHHHHHhchhcCCCEEEEEEChhhcCH---------------HHHHHHHHhh
Confidence 1111000 011 123455666544432 3456999999998842 3568889888
Q ss_pred cCCCCCCcEEEEEecCCCCCCChhhhCCCCcceEEEecCCCHHHHHHHHHHHHhcCCCCCCCCCCHHHHHHhCCCCCHHH
Q 007575 464 DGFDSNSAVIVLGATNRSDVLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTTGFTGAD 543 (597)
Q Consensus 464 dg~~~~~~VIVIaaTNrpd~LD~aLlRpgRFd~~I~v~~Pd~~eR~eILk~~l~~~~~~l~~dvdl~~LA~~t~G~SgaD 543 (597)
+. ++..+++|.+|+.++.+.++|++ |+. .+.+.+++.++..+.++..+...++.+.++ .+..|+..+.| +.++
T Consensus 144 Ee--pp~~~vfI~~tte~~kL~~tI~S--Rc~-~~~f~~l~~~el~~~L~~i~~~egi~id~e-Al~lLa~~s~G-dlR~ 216 (563)
T PRK06647 144 EE--PPPYIVFIFATTEVHKLPATIKS--RCQ-HFNFRLLSLEKIYNMLKKVCLEDQIKYEDE-ALKWIAYKSTG-SVRD 216 (563)
T ss_pred cc--CCCCEEEEEecCChHHhHHHHHH--hce-EEEecCCCHHHHHHHHHHHHHHcCCCCCHH-HHHHHHHHcCC-CHHH
Confidence 84 44567777788888889999988 775 789999999999999999888777776655 47888888776 7888
Q ss_pred HHHHHHHHHHHHHhcCCCcccHHHHHHH
Q 007575 544 LANLVNEAALLAGRLNKVVVEKIDFIHA 571 (597)
Q Consensus 544 L~~Lv~eAal~A~r~~~~~It~~d~~~A 571 (597)
+.++++.++..+ + ..|+.+++.++
T Consensus 217 alslLdklis~~---~-~~It~e~V~~l 240 (563)
T PRK06647 217 AYTLFDQVVSFS---D-SDITLEQIRSK 240 (563)
T ss_pred HHHHHHHHHhhc---C-CCCCHHHHHHH
Confidence 888888776543 2 34777666554
No 113
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=99.59 E-value=6.9e-14 Score=155.97 Aligned_cols=208 Identities=21% Similarity=0.266 Sum_probs=147.5
Q ss_pred CCCCcccccccCChHHHHHHHHHHHHhcChhHHhhcCCCCCCceEEeCCCCChHHHHHHHHHHhcCC-------Ceeee-
Q 007575 325 QGDTITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEV-------PFISC- 396 (597)
Q Consensus 325 ~~~~vtf~dV~G~de~k~~L~eiv~~l~~p~~~~~lg~~~p~gVLL~GPPGTGKT~LArAIA~el~~-------pfi~i- 396 (597)
...+.+|+||+|++.+++.|...+.. .+.|..+|||||+|+|||++|+++|+.+.+ |...+
T Consensus 7 KyRP~~fdeiiGqe~v~~~L~~~I~~-----------grl~hayLf~Gp~G~GKTt~Ar~LAk~L~c~~~~~~~pC~~C~ 75 (535)
T PRK08451 7 KYRPKHFDELIGQESVSKTLSLALDN-----------NRLAHAYLFSGLRGSGKTSSARIFARALVCEQGPSSTPCDTCI 75 (535)
T ss_pred HHCCCCHHHccCcHHHHHHHHHHHHc-----------CCCCeeEEEECCCCCcHHHHHHHHHHHhcCCCCCCCCCCcccH
Confidence 34567899999999999999988852 245667899999999999999999998742 11111
Q ss_pred chhhhHHH-----Hh--h---cchHHHHHHHHHHHh----cCCeEEEEcCcchhhhhcCCcccccchhHHHHHHHHHHHH
Q 007575 397 SASEFVEL-----YV--G---MGASRVRDLFARAKK----EAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTE 462 (597)
Q Consensus 397 s~sef~~~-----~v--G---~~e~~vr~lF~~A~~----~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~eqtLnqLL~e 462 (597)
+|..+... +. + .+-..++++.+.+.. ....|++|||+|.+.. ...|.||..
T Consensus 76 ~C~~~~~~~h~dv~eldaas~~gId~IRelie~~~~~P~~~~~KVvIIDEad~Lt~---------------~A~NALLK~ 140 (535)
T PRK08451 76 QCQSALENRHIDIIEMDAASNRGIDDIRELIEQTKYKPSMARFKIFIIDEVHMLTK---------------EAFNALLKT 140 (535)
T ss_pred HHHHHhhcCCCeEEEeccccccCHHHHHHHHHHHhhCcccCCeEEEEEECcccCCH---------------HHHHHHHHH
Confidence 11111000 00 0 123567777665432 1235999999998853 345889999
Q ss_pred hcCCCCCCcEEEEEecCCCCCCChhhhCCCCcceEEEecCCCHHHHHHHHHHHHhcCCCCCCCCCCHHHHHHhCCCCCHH
Q 007575 463 MDGFDSNSAVIVLGATNRSDVLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTTGFTGA 542 (597)
Q Consensus 463 mdg~~~~~~VIVIaaTNrpd~LD~aLlRpgRFd~~I~v~~Pd~~eR~eILk~~l~~~~~~l~~dvdl~~LA~~t~G~Sga 542 (597)
|+.. +..+.+|.+|+.+..|.+++++ |. .+++|.+++.++..+.++..+.+.++.+.++ .+..|+....| +.+
T Consensus 141 LEEp--p~~t~FIL~ttd~~kL~~tI~S--Rc-~~~~F~~Ls~~ei~~~L~~Il~~EGi~i~~~-Al~~Ia~~s~G-dlR 213 (535)
T PRK08451 141 LEEP--PSYVKFILATTDPLKLPATILS--RT-QHFRFKQIPQNSIISHLKTILEKEGVSYEPE-ALEILARSGNG-SLR 213 (535)
T ss_pred Hhhc--CCceEEEEEECChhhCchHHHh--hc-eeEEcCCCCHHHHHHHHHHHHHHcCCCCCHH-HHHHHHHHcCC-cHH
Confidence 9864 3445666667778999999998 75 4889999999999999998888877776554 58888888776 788
Q ss_pred HHHHHHHHHHHHHHhcCCCcccHHHHH
Q 007575 543 DLANLVNEAALLAGRLNKVVVEKIDFI 569 (597)
Q Consensus 543 DL~~Lv~eAal~A~r~~~~~It~~d~~ 569 (597)
++.++++.|...+ ...||.+++.
T Consensus 214 ~alnlLdqai~~~----~~~It~~~V~ 236 (535)
T PRK08451 214 DTLTLLDQAIIYC----KNAITESKVA 236 (535)
T ss_pred HHHHHHHHHHHhc----CCCCCHHHHH
Confidence 8999988877665 2345555544
No 114
>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair]
Probab=99.59 E-value=3e-14 Score=148.68 Aligned_cols=213 Identities=29% Similarity=0.416 Sum_probs=141.8
Q ss_pred cCCCCcccccccCChHHHHHHHHHHHHhcChhHHhhcCCCCCCceEEeCCCCChHHHHHHHHHHhcCCC---eeeechhh
Q 007575 324 EQGDTITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVP---FISCSASE 400 (597)
Q Consensus 324 ~~~~~vtf~dV~G~de~k~~L~eiv~~l~~p~~~~~lg~~~p~gVLL~GPPGTGKT~LArAIA~el~~p---fi~is~se 400 (597)
+...+-+++|.+|++++..+ ..++..+-.. ..-..++|+||||||||+||+.|+.....+ |++++...
T Consensus 130 ermRPktL~dyvGQ~hlv~q-~gllrs~ieq--------~~ipSmIlWGppG~GKTtlArlia~tsk~~SyrfvelSAt~ 200 (554)
T KOG2028|consen 130 ERMRPKTLDDYVGQSHLVGQ-DGLLRSLIEQ--------NRIPSMILWGPPGTGKTTLARLIASTSKKHSYRFVELSATN 200 (554)
T ss_pred hhcCcchHHHhcchhhhcCc-chHHHHHHHc--------CCCCceEEecCCCCchHHHHHHHHhhcCCCceEEEEEeccc
Confidence 44456778999999887654 2222221111 112369999999999999999999988766 77777642
Q ss_pred hHHHHhhcchHHHHHHHHHHHhc-----CCeEEEEcCcchhhhhcCCcccccchhHHHHHHHHHHHHhcCCCCCCcEEEE
Q 007575 401 FVELYVGMGASRVRDLFARAKKE-----APSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVL 475 (597)
Q Consensus 401 f~~~~vG~~e~~vr~lF~~A~~~-----aP~ILfIDEIDaL~~~r~~~~~~~~~~e~eqtLnqLL~emdg~~~~~~VIVI 475 (597)
.+.+.+|++|+.+++. ...|||||||+.+-+..+ ..||-.++ +..|++|
T Consensus 201 -------a~t~dvR~ife~aq~~~~l~krkTilFiDEiHRFNksQQ---------------D~fLP~VE----~G~I~lI 254 (554)
T KOG2028|consen 201 -------AKTNDVRDIFEQAQNEKSLTKRKTILFIDEIHRFNKSQQ---------------DTFLPHVE----NGDITLI 254 (554)
T ss_pred -------cchHHHHHHHHHHHHHHhhhcceeEEEeHHhhhhhhhhh---------------hcccceec----cCceEEE
Confidence 3457789999999763 457999999999876654 33555444 5678889
Q ss_pred Eec--CCCCCCChhhhCCCCcceEEEecCCCHHHHHHHHHHHHh---c--C-CCCCCC------CCCHHHHHHhCCCCCH
Q 007575 476 GAT--NRSDVLDPALRRPGRFDRVVMVETPDKIGREAILKVHVS---K--K-ELPLAK------DIDLGDIASMTTGFTG 541 (597)
Q Consensus 476 aaT--Nrpd~LD~aLlRpgRFd~~I~v~~Pd~~eR~eILk~~l~---~--~-~~~l~~------dvdl~~LA~~t~G~Sg 541 (597)
+|| |..-.|+.+|++ |+ +++.+.....++...||..-+. + + ..++.. +--++.|+..+.|-.-
T Consensus 255 GATTENPSFqln~aLlS--RC-~VfvLekL~~n~v~~iL~raia~l~dser~~~~l~n~s~~ve~siidyla~lsdGDaR 331 (554)
T KOG2028|consen 255 GATTENPSFQLNAALLS--RC-RVFVLEKLPVNAVVTILMRAIASLGDSERPTDPLPNSSMFVEDSIIDYLAYLSDGDAR 331 (554)
T ss_pred ecccCCCccchhHHHHh--cc-ceeEeccCCHHHHHHHHHHHHHhhccccccCCCCCCcchhhhHHHHHHHHHhcCchHH
Confidence 877 444678999999 66 4788888899999999887544 1 1 112211 1126778888887444
Q ss_pred HHHHHHHHHH-HHHHHhc---CCCcccHHHHHHHHHHH
Q 007575 542 ADLANLVNEA-ALLAGRL---NKVVVEKIDFIHAVERS 575 (597)
Q Consensus 542 aDL~~Lv~eA-al~A~r~---~~~~It~~d~~~Al~~v 575 (597)
+.|. .++.+ .+.+.|. ....++.+|+.+++.+-
T Consensus 332 ~aLN-~Lems~~m~~tr~g~~~~~~lSidDvke~lq~s 368 (554)
T KOG2028|consen 332 AALN-ALEMSLSMFCTRSGQSSRVLLSIDDVKEGLQRS 368 (554)
T ss_pred HHHH-HHHHHHHHHHhhcCCcccceecHHHHHHHHhhc
Confidence 3332 22322 2333333 34578888988887653
No 115
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=99.59 E-value=2.3e-14 Score=166.92 Aligned_cols=163 Identities=22% Similarity=0.346 Sum_probs=123.5
Q ss_pred cccCChHHHHHHHHHHHHhcChhHHhhcCCCCCCceEEeCCCCChHHHHHHHHHHhcCCCeeeechhhhH---------H
Q 007575 333 DVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFV---------E 403 (597)
Q Consensus 333 dV~G~de~k~~L~eiv~~l~~p~~~~~lg~~~p~gVLL~GPPGTGKT~LArAIA~el~~pfi~is~sef~---------~ 403 (597)
+..|++++|+.+.+.+...... +......++|+||||+|||++++.+|+.++.+|+.++++... .
T Consensus 323 ~~~g~~~vK~~i~~~l~~~~~~------~~~~g~~i~l~GppG~GKTtl~~~ia~~l~~~~~~i~~~~~~d~~~i~g~~~ 396 (784)
T PRK10787 323 DHYGLERVKDRILEYLAVQSRV------NKIKGPILCLVGPPGVGKTSLGQSIAKATGRKYVRMALGGVRDEAEIRGHRR 396 (784)
T ss_pred hccCHHHHHHHHHHHHHHHHhc------ccCCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEEEcCCCCCHHHhccchh
Confidence 5999999999998877753321 112334699999999999999999999999999988765432 2
Q ss_pred HHhhcchHHHHHHHHHHHhcCCeEEEEcCcchhhhhcCCcccccchhHHHHHHHHHHHHhcC-----CC--------CCC
Q 007575 404 LYVGMGASRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDG-----FD--------SNS 470 (597)
Q Consensus 404 ~~vG~~e~~vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~eqtLnqLL~emdg-----~~--------~~~ 470 (597)
.|.|.....+.+.+..+....| ||+|||||.+....++. ..+.|+..||. |. .-+
T Consensus 397 ~~~g~~~G~~~~~l~~~~~~~~-villDEidk~~~~~~g~-----------~~~aLlevld~~~~~~~~d~~~~~~~dls 464 (784)
T PRK10787 397 TYIGSMPGKLIQKMAKVGVKNP-LFLLDEIDKMSSDMRGD-----------PASALLEVLDPEQNVAFSDHYLEVDYDLS 464 (784)
T ss_pred ccCCCCCcHHHHHHHhcCCCCC-EEEEEChhhcccccCCC-----------HHHHHHHHhccccEEEEecccccccccCC
Confidence 3566666667777776665556 89999999997653221 23566666663 11 126
Q ss_pred cEEEEEecCCCCCCChhhhCCCCcceEEEecCCCHHHHHHHHHHHHh
Q 007575 471 AVIVLGATNRSDVLDPALRRPGRFDRVVMVETPDKIGREAILKVHVS 517 (597)
Q Consensus 471 ~VIVIaaTNrpd~LD~aLlRpgRFd~~I~v~~Pd~~eR~eILk~~l~ 517 (597)
++++|+|+|.. .|+++|+. ||. .|.+..++.++..+|.+.|+.
T Consensus 465 ~v~~i~TaN~~-~i~~aLl~--R~~-ii~~~~~t~eek~~Ia~~~L~ 507 (784)
T PRK10787 465 DVMFVATSNSM-NIPAPLLD--RME-VIRLSGYTEDEKLNIAKRHLL 507 (784)
T ss_pred ceEEEEcCCCC-CCCHHHhc--cee-eeecCCCCHHHHHHHHHHhhh
Confidence 79999999887 59999999 995 899999999999999998884
No 116
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=99.59 E-value=6.2e-14 Score=158.75 Aligned_cols=212 Identities=18% Similarity=0.203 Sum_probs=153.6
Q ss_pred cCCCCcccccccCChHHHHHHHHHHHHhcChhHHhhcCCCCCCceEEeCCCCChHHHHHHHHHHhcCCCeeee-------
Q 007575 324 EQGDTITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISC------- 396 (597)
Q Consensus 324 ~~~~~vtf~dV~G~de~k~~L~eiv~~l~~p~~~~~lg~~~p~gVLL~GPPGTGKT~LArAIA~el~~pfi~i------- 396 (597)
....+.+|+||+|++.+++.|...+.. .+.+..+||+||+|+|||++|+++|+.+++.....
T Consensus 16 ~KyRP~~f~dliGq~~~v~~L~~~~~~-----------gri~ha~L~~Gp~GvGKTt~Ar~lAk~L~c~~~~~~~~~~~~ 84 (598)
T PRK09111 16 RKYRPQTFDDLIGQEAMVRTLTNAFET-----------GRIAQAFMLTGVRGVGKTTTARILARALNYEGPDGDGGPTID 84 (598)
T ss_pred hhhCCCCHHHhcCcHHHHHHHHHHHHc-----------CCCCceEEEECCCCCCHHHHHHHHHHhhCcCCccccCCCccc
Confidence 344567999999999999999887762 35677899999999999999999999886532111
Q ss_pred ------chhhhHH--------HH--hhcchHHHHHHHHHHHhc----CCeEEEEcCcchhhhhcCCcccccchhHHHHHH
Q 007575 397 ------SASEFVE--------LY--VGMGASRVRDLFARAKKE----APSIIFIDEIDAVAKSRDGRFRIVSNDEREQTL 456 (597)
Q Consensus 397 ------s~sef~~--------~~--vG~~e~~vr~lF~~A~~~----aP~ILfIDEIDaL~~~r~~~~~~~~~~e~eqtL 456 (597)
+|..+.+ .. ...+...+|++++.+... ...|++|||+|.+.. ...
T Consensus 85 ~cg~c~~C~~i~~g~h~Dv~e~~a~s~~gvd~IReIie~~~~~P~~a~~KVvIIDEad~Ls~---------------~a~ 149 (598)
T PRK09111 85 LCGVGEHCQAIMEGRHVDVLEMDAASHTGVDDIREIIESVRYRPVSARYKVYIIDEVHMLST---------------AAF 149 (598)
T ss_pred cCcccHHHHHHhcCCCCceEEecccccCCHHHHHHHHHHHHhchhcCCcEEEEEEChHhCCH---------------HHH
Confidence 1211111 00 012345678887776532 356999999998842 345
Q ss_pred HHHHHHhcCCCCCCcEEEEEecCCCCCCChhhhCCCCcceEEEecCCCHHHHHHHHHHHHhcCCCCCCCCCCHHHHHHhC
Q 007575 457 NQLLTEMDGFDSNSAVIVLGATNRSDVLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMT 536 (597)
Q Consensus 457 nqLL~emdg~~~~~~VIVIaaTNrpd~LD~aLlRpgRFd~~I~v~~Pd~~eR~eILk~~l~~~~~~l~~dvdl~~LA~~t 536 (597)
|.|+..|+.. ...+++|.+|+.++.+.+.+++ |+ ..+.|..|+.++....++..+.+.+..+.++ .++.|+..+
T Consensus 150 naLLKtLEeP--p~~~~fIl~tte~~kll~tI~S--Rc-q~~~f~~l~~~el~~~L~~i~~kegi~i~~e-Al~lIa~~a 223 (598)
T PRK09111 150 NALLKTLEEP--PPHVKFIFATTEIRKVPVTVLS--RC-QRFDLRRIEADVLAAHLSRIAAKEGVEVEDE-ALALIARAA 223 (598)
T ss_pred HHHHHHHHhC--CCCeEEEEEeCChhhhhHHHHh--he-eEEEecCCCHHHHHHHHHHHHHHcCCCCCHH-HHHHHHHHc
Confidence 8889888853 3446666677777788888887 77 4799999999999999999988777776654 477888888
Q ss_pred CCCCHHHHHHHHHHHHHHHHhcCCCcccHHHHHHHH
Q 007575 537 TGFTGADLANLVNEAALLAGRLNKVVVEKIDFIHAV 572 (597)
Q Consensus 537 ~G~SgaDL~~Lv~eAal~A~r~~~~~It~~d~~~Al 572 (597)
.| +.+++.++++.+.... ...|+.+++++.+
T Consensus 224 ~G-dlr~al~~Ldkli~~g----~g~It~e~V~~ll 254 (598)
T PRK09111 224 EG-SVRDGLSLLDQAIAHG----AGEVTAEAVRDML 254 (598)
T ss_pred CC-CHHHHHHHHHHHHhhc----CCCcCHHHHHHHh
Confidence 75 7888888888776542 2458888776654
No 117
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=99.59 E-value=7.1e-14 Score=153.96 Aligned_cols=210 Identities=21% Similarity=0.243 Sum_probs=143.8
Q ss_pred CCCCcccccccCChHHHHHHHHHHHHhcChhHHhhcCCCCCCceEEeCCCCChHHHHHHHHHHhcCCC--------ee-e
Q 007575 325 QGDTITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVP--------FI-S 395 (597)
Q Consensus 325 ~~~~vtf~dV~G~de~k~~L~eiv~~l~~p~~~~~lg~~~p~gVLL~GPPGTGKT~LArAIA~el~~p--------fi-~ 395 (597)
...+.+|+||+|++.+++.|...+.. .+.|..+||+||||+|||++|+++|+.+.++ .. +
T Consensus 10 kyRP~~~~diiGq~~~v~~L~~~i~~-----------~~i~ha~Lf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~c~~c 78 (451)
T PRK06305 10 KYRPQTFSEILGQDAVVAVLKNALRF-----------NRAAHAYLFSGIRGTGKTTLARIFAKALNCQNPTEDQEPCNQC 78 (451)
T ss_pred HhCCCCHHHhcCcHHHHHHHHHHHHc-----------CCCceEEEEEcCCCCCHHHHHHHHHHHhcCCCcccCCCCCccc
Confidence 34568899999999999988888762 2456779999999999999999999987542 10 0
Q ss_pred echhhhHHH-------Hhh---cchHHHHHHHHHHH----hcCCeEEEEcCcchhhhhcCCcccccchhHHHHHHHHHHH
Q 007575 396 CSASEFVEL-------YVG---MGASRVRDLFARAK----KEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLT 461 (597)
Q Consensus 396 is~sef~~~-------~vG---~~e~~vr~lF~~A~----~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~eqtLnqLL~ 461 (597)
.+|..+... +.| .+-..++++.+.+. .....||+|||+|.+.. ...|.|+.
T Consensus 79 ~~C~~i~~~~~~d~~~i~g~~~~gid~ir~i~~~l~~~~~~~~~kvvIIdead~lt~---------------~~~n~LLk 143 (451)
T PRK06305 79 ASCKEISSGTSLDVLEIDGASHRGIEDIRQINETVLFTPSKSRYKIYIIDEVHMLTK---------------EAFNSLLK 143 (451)
T ss_pred HHHHHHhcCCCCceEEeeccccCCHHHHHHHHHHHHhhhhcCCCEEEEEecHHhhCH---------------HHHHHHHH
Confidence 111111100 011 12234554443332 24467999999998852 23578898
Q ss_pred HhcCCCCCCcEEEEEecCCCCCCChhhhCCCCcceEEEecCCCHHHHHHHHHHHHhcCCCCCCCCCCHHHHHHhCCCCCH
Q 007575 462 EMDGFDSNSAVIVLGATNRSDVLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTTGFTG 541 (597)
Q Consensus 462 emdg~~~~~~VIVIaaTNrpd~LD~aLlRpgRFd~~I~v~~Pd~~eR~eILk~~l~~~~~~l~~dvdl~~LA~~t~G~Sg 541 (597)
.|+.. ...+++|.+|+.+..|.+.+.+ |+. .+.+..++.++..+.++..+.+.++.+.++ .++.|+..+.| +.
T Consensus 144 ~lEep--~~~~~~Il~t~~~~kl~~tI~s--Rc~-~v~f~~l~~~el~~~L~~~~~~eg~~i~~~-al~~L~~~s~g-dl 216 (451)
T PRK06305 144 TLEEP--PQHVKFFLATTEIHKIPGTILS--RCQ-KMHLKRIPEETIIDKLALIAKQEGIETSRE-ALLPIARAAQG-SL 216 (451)
T ss_pred HhhcC--CCCceEEEEeCChHhcchHHHH--hce-EEeCCCCCHHHHHHHHHHHHHHcCCCCCHH-HHHHHHHHcCC-CH
Confidence 88853 3466777777888889999988 774 789999999999999998887766666544 47888888865 56
Q ss_pred HHHHHHHHHHHHHHHhcCCCcccHHHHHHH
Q 007575 542 ADLANLVNEAALLAGRLNKVVVEKIDFIHA 571 (597)
Q Consensus 542 aDL~~Lv~eAal~A~r~~~~~It~~d~~~A 571 (597)
+++.++++...... + ..|+.++++++
T Consensus 217 r~a~~~Lekl~~~~---~-~~It~~~V~~l 242 (451)
T PRK06305 217 RDAESLYDYVVGLF---P-KSLDPDSVAKA 242 (451)
T ss_pred HHHHHHHHHHHHhc---c-CCcCHHHHHHH
Confidence 66666666554332 2 33777666544
No 118
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=99.58 E-value=3.3e-14 Score=153.85 Aligned_cols=187 Identities=20% Similarity=0.278 Sum_probs=128.0
Q ss_pred ccccccCChHHHHHHHHHHHHhcChhHHhhcCCCCCCceEEeCCCCChHHHHHHHHHHhcCCCee------e-echhhhH
Q 007575 330 TFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFI------S-CSASEFV 402 (597)
Q Consensus 330 tf~dV~G~de~k~~L~eiv~~l~~p~~~~~lg~~~p~gVLL~GPPGTGKT~LArAIA~el~~pfi------~-is~sef~ 402 (597)
.|++|+|++.+++.|+.++..-+.. +...+.+.|.++||+||||+|||++|+++|..+.+.-- . -+|..+.
T Consensus 3 ~f~~IiGq~~~~~~L~~~i~~~~~~--~~~~~~~l~ha~Lf~Gp~G~GKt~lA~~lA~~l~c~~~~~~~Cg~C~~C~~~~ 80 (394)
T PRK07940 3 VWDDLVGQEAVVAELRAAARAARAD--VAAAGSGMTHAWLFTGPPGSGRSVAARAFAAALQCTDPDEPGCGECRACRTVL 80 (394)
T ss_pred hhhhccChHHHHHHHHHHHHhcccc--ccccCCCCCeEEEEECCCCCcHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHh
Confidence 4899999999999999999853321 22335557889999999999999999999998754310 0 0111110
Q ss_pred ----------HH-HhhcchHHHHHHHHHHHh----cCCeEEEEcCcchhhhhcCCcccccchhHHHHHHHHHHHHhcCCC
Q 007575 403 ----------EL-YVGMGASRVRDLFARAKK----EAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFD 467 (597)
Q Consensus 403 ----------~~-~vG~~e~~vr~lF~~A~~----~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~eqtLnqLL~emdg~~ 467 (597)
.. -...+...+|++++.+.. ....|+||||+|.+... ..|.||..|+..
T Consensus 81 ~~~hpD~~~i~~~~~~i~i~~iR~l~~~~~~~p~~~~~kViiIDead~m~~~---------------aanaLLk~LEep- 144 (394)
T PRK07940 81 AGTHPDVRVVAPEGLSIGVDEVRELVTIAARRPSTGRWRIVVIEDADRLTER---------------AANALLKAVEEP- 144 (394)
T ss_pred cCCCCCEEEeccccccCCHHHHHHHHHHHHhCcccCCcEEEEEechhhcCHH---------------HHHHHHHHhhcC-
Confidence 00 011234568888887764 23469999999998532 347899999853
Q ss_pred CCCcEEEEEecCCCCCCChhhhCCCCcceEEEecCCCHHHHHHHHHHHHhcCCCCCCCCCCHHHHHHhCCCCCHHHH
Q 007575 468 SNSAVIVLGATNRSDVLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTTGFTGADL 544 (597)
Q Consensus 468 ~~~~VIVIaaTNrpd~LD~aLlRpgRFd~~I~v~~Pd~~eR~eILk~~l~~~~~~l~~dvdl~~LA~~t~G~SgaDL 544 (597)
..++++|.+|+.++.+.|.+++ |+ ..+.|++|+.++..+++.... + ..+ .....++..+.|..+..+
T Consensus 145 -~~~~~fIL~a~~~~~llpTIrS--Rc-~~i~f~~~~~~~i~~~L~~~~---~--~~~-~~a~~la~~s~G~~~~A~ 211 (394)
T PRK07940 145 -PPRTVWLLCAPSPEDVLPTIRS--RC-RHVALRTPSVEAVAEVLVRRD---G--VDP-ETARRAARASQGHIGRAR 211 (394)
T ss_pred -CCCCeEEEEECChHHChHHHHh--hC-eEEECCCCCHHHHHHHHHHhc---C--CCH-HHHHHHHHHcCCCHHHHH
Confidence 3334455555558999999998 77 489999999998887776322 2 222 246678888888666443
No 119
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=99.57 E-value=1.3e-14 Score=162.26 Aligned_cols=219 Identities=23% Similarity=0.321 Sum_probs=153.7
Q ss_pred ccccCChHHHHHHHHHHHHhcChhHHhhcCCCCCCceEEeCCCCChHHHHHHHHHHhcCCCeeeechhhhHH--------
Q 007575 332 ADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFVE-------- 403 (597)
Q Consensus 332 ~dV~G~de~k~~L~eiv~~l~~p~~~~~lg~~~p~gVLL~GPPGTGKT~LArAIA~el~~pfi~is~sef~~-------- 403 (597)
.|-.|++++|+++.|.+.-.+... .....-++|+||||+|||+|++.||..++..|+.++..-+..
T Consensus 323 ~dHYGLekVKeRIlEyLAV~~l~~------~~kGpILcLVGPPGVGKTSLgkSIA~al~RkfvR~sLGGvrDEAEIRGHR 396 (782)
T COG0466 323 KDHYGLEKVKERILEYLAVQKLTK------KLKGPILCLVGPPGVGKTSLGKSIAKALGRKFVRISLGGVRDEAEIRGHR 396 (782)
T ss_pred ccccCchhHHHHHHHHHHHHHHhc------cCCCcEEEEECCCCCCchhHHHHHHHHhCCCEEEEecCccccHHHhcccc
Confidence 478999999999998776432221 112245789999999999999999999999999998654322
Q ss_pred -HHhhcchHHHHHHHHHHHhcCCeEEEEcCcchhhhhcCCcccccchhHHHHHHHHHHHHhcC-----CC--------CC
Q 007575 404 -LYVGMGASRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDG-----FD--------SN 469 (597)
Q Consensus 404 -~~vG~~e~~vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~eqtLnqLL~emdg-----~~--------~~ 469 (597)
.|+|....++-+-+.+|....| +++|||||.++.+-.++- -..||..+|- |. .-
T Consensus 397 RTYIGamPGrIiQ~mkka~~~NP-v~LLDEIDKm~ss~rGDP-----------aSALLEVLDPEQN~~F~DhYLev~yDL 464 (782)
T COG0466 397 RTYIGAMPGKIIQGMKKAGVKNP-VFLLDEIDKMGSSFRGDP-----------ASALLEVLDPEQNNTFSDHYLEVPYDL 464 (782)
T ss_pred ccccccCChHHHHHHHHhCCcCC-eEEeechhhccCCCCCCh-----------HHHHHhhcCHhhcCchhhccccCccch
Confidence 3889999999999999999999 999999999987654321 1455555552 11 12
Q ss_pred CcEEEEEecCCCCCCChhhhCCCCcceEEEecCCCHHHHHHHHHHHHhc-----CCCC-----CCCCCCHHHHHHhCCCC
Q 007575 470 SAVIVLGATNRSDVLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSK-----KELP-----LAKDIDLGDIASMTTGF 539 (597)
Q Consensus 470 ~~VIVIaaTNrpd~LD~aLlRpgRFd~~I~v~~Pd~~eR~eILk~~l~~-----~~~~-----l~~dvdl~~LA~~t~G~ 539 (597)
+.|++|||+|..+.++.+|+. |+. +|++.-++.+|..+|.+.|+-. .+++ +.++ .+..|.+....=
T Consensus 465 S~VmFiaTANsl~tIP~PLlD--RME-iI~lsgYt~~EKl~IAk~~LiPk~~~~~gL~~~el~i~d~-ai~~iI~~YTRE 540 (782)
T COG0466 465 SKVMFIATANSLDTIPAPLLD--RME-VIRLSGYTEDEKLEIAKRHLIPKQLKEHGLKKGELTITDE-AIKDIIRYYTRE 540 (782)
T ss_pred hheEEEeecCccccCChHHhc--cee-eeeecCCChHHHHHHHHHhcchHHHHHcCCCccceeecHH-HHHHHHHHHhHh
Confidence 579999999999999999999 995 8999999999999999988742 1221 1111 133333322111
Q ss_pred CH-----HHHHHHHHHHHHHHHhcCCC---cccHHHHHHHH
Q 007575 540 TG-----ADLANLVNEAALLAGRLNKV---VVEKIDFIHAV 572 (597)
Q Consensus 540 Sg-----aDL~~Lv~eAal~A~r~~~~---~It~~d~~~Al 572 (597)
+| ++|..+|+.++..-...... .|+..++.+-+
T Consensus 541 AGVR~LeR~i~ki~RK~~~~i~~~~~k~~~~i~~~~l~~yL 581 (782)
T COG0466 541 AGVRNLEREIAKICRKAAKKILLKKEKSIVKIDEKNLKKYL 581 (782)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHhcCcccceeeCHHHHHHHh
Confidence 22 56677777766544333222 46666655443
No 120
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.57 E-value=1.1e-13 Score=157.67 Aligned_cols=196 Identities=19% Similarity=0.227 Sum_probs=141.6
Q ss_pred CCCCcccccccCChHHHHHHHHHHHHhcChhHHhhcCCCCCCceEEeCCCCChHHHHHHHHHHhcCCCeee-------ec
Q 007575 325 QGDTITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFIS-------CS 397 (597)
Q Consensus 325 ~~~~vtf~dV~G~de~k~~L~eiv~~l~~p~~~~~lg~~~p~gVLL~GPPGTGKT~LArAIA~el~~pfi~-------is 397 (597)
.....+|++++|++++++.|...+.. .+.+.++||+||+|+|||++|+++|+.+++.... -.
T Consensus 9 kyRP~~f~~liGq~~i~~~L~~~l~~-----------~rl~~a~Lf~Gp~G~GKttlA~~lAk~L~c~~~~~~~~~~Cg~ 77 (620)
T PRK14948 9 KYRPQRFDELVGQEAIATTLKNALIS-----------NRIAPAYLFTGPRGTGKTSSARILAKSLNCLNSDKPTPEPCGK 77 (620)
T ss_pred HhCCCcHhhccChHHHHHHHHHHHHc-----------CCCCceEEEECCCCCChHHHHHHHHHHhcCCCcCCCCCCCCcc
Confidence 34568899999999999999888863 2245579999999999999999999998652110 01
Q ss_pred hhh-----------hH--HHHhhcchHHHHHHHHHHHh----cCCeEEEEcCcchhhhhcCCcccccchhHHHHHHHHHH
Q 007575 398 ASE-----------FV--ELYVGMGASRVRDLFARAKK----EAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLL 460 (597)
Q Consensus 398 ~se-----------f~--~~~vG~~e~~vr~lF~~A~~----~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~eqtLnqLL 460 (597)
|.. +. +.....+...+|++++.+.. ....|++|||+|.|.. ...|.||
T Consensus 78 C~~C~~i~~g~h~D~~ei~~~~~~~vd~IReii~~a~~~p~~~~~KViIIDEad~Lt~---------------~a~naLL 142 (620)
T PRK14948 78 CELCRAIAAGNALDVIEIDAASNTGVDNIRELIERAQFAPVQARWKVYVIDECHMLST---------------AAFNALL 142 (620)
T ss_pred cHHHHHHhcCCCccEEEEeccccCCHHHHHHHHHHHhhChhcCCceEEEEECccccCH---------------HHHHHHH
Confidence 111 10 00112345678888877753 2346999999998842 3458899
Q ss_pred HHhcCCCCCCcEEEEEecCCCCCCChhhhCCCCcceEEEecCCCHHHHHHHHHHHHhcCCCCCCCCCCHHHHHHhCCCCC
Q 007575 461 TEMDGFDSNSAVIVLGATNRSDVLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTTGFT 540 (597)
Q Consensus 461 ~emdg~~~~~~VIVIaaTNrpd~LD~aLlRpgRFd~~I~v~~Pd~~eR~eILk~~l~~~~~~l~~dvdl~~LA~~t~G~S 540 (597)
..|+. ....+++|++|+.++.+.+.|++ |+. .+.|..++.++....+...+.+.+..+.++ .+..|+..+.| +
T Consensus 143 K~LEe--Pp~~tvfIL~t~~~~~llpTIrS--Rc~-~~~f~~l~~~ei~~~L~~ia~kegi~is~~-al~~La~~s~G-~ 215 (620)
T PRK14948 143 KTLEE--PPPRVVFVLATTDPQRVLPTIIS--RCQ-RFDFRRIPLEAMVQHLSEIAEKESIEIEPE-ALTLVAQRSQG-G 215 (620)
T ss_pred HHHhc--CCcCeEEEEEeCChhhhhHHHHh--hee-EEEecCCCHHHHHHHHHHHHHHhCCCCCHH-HHHHHHHHcCC-C
Confidence 99984 44557777788888889899988 774 788999999888888888777766666555 37888888876 4
Q ss_pred HHHHHHHHHHHHH
Q 007575 541 GADLANLVNEAAL 553 (597)
Q Consensus 541 gaDL~~Lv~eAal 553 (597)
.+++.++++..++
T Consensus 216 lr~A~~lLeklsL 228 (620)
T PRK14948 216 LRDAESLLDQLSL 228 (620)
T ss_pred HHHHHHHHHHHHh
Confidence 5777777776544
No 121
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=99.57 E-value=1.7e-13 Score=142.69 Aligned_cols=202 Identities=23% Similarity=0.257 Sum_probs=137.1
Q ss_pred CCCcccccccCChHHHHHHHHHHHHhcChhHHhhcCCCCCCceEEeCCCCChHHHHHHHHHHhcC-----CCeeeechhh
Q 007575 326 GDTITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAE-----VPFISCSASE 400 (597)
Q Consensus 326 ~~~vtf~dV~G~de~k~~L~eiv~~l~~p~~~~~lg~~~p~gVLL~GPPGTGKT~LArAIA~el~-----~pfi~is~se 400 (597)
..+.+|+|++|.+++++.|...+.. .. ..++||+||||||||++++++++++. .+++.+++++
T Consensus 11 yrP~~~~~~~g~~~~~~~l~~~i~~-----------~~-~~~~ll~G~~G~GKt~~~~~l~~~l~~~~~~~~~i~~~~~~ 78 (319)
T PRK00440 11 YRPRTLDEIVGQEEIVERLKSYVKE-----------KN-MPHLLFAGPPGTGKTTAALALARELYGEDWRENFLELNASD 78 (319)
T ss_pred hCCCcHHHhcCcHHHHHHHHHHHhC-----------CC-CCeEEEECCCCCCHHHHHHHHHHHHcCCccccceEEecccc
Confidence 3457899999999999888887742 11 22589999999999999999999863 3455555443
Q ss_pred hHHHHhhcchHHHHHHHHHHHh------cCCeEEEEcCcchhhhhcCCcccccchhHHHHHHHHHHHHhcCCCCCCcEEE
Q 007575 401 FVELYVGMGASRVRDLFARAKK------EAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIV 474 (597)
Q Consensus 401 f~~~~vG~~e~~vr~lF~~A~~------~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~eqtLnqLL~emdg~~~~~~VIV 474 (597)
.. +...+++.+..... ..+.+|+|||+|.+... ..+.|+..++..... ..+
T Consensus 79 ~~------~~~~~~~~i~~~~~~~~~~~~~~~vviiDe~~~l~~~---------------~~~~L~~~le~~~~~--~~l 135 (319)
T PRK00440 79 ER------GIDVIRNKIKEFARTAPVGGAPFKIIFLDEADNLTSD---------------AQQALRRTMEMYSQN--TRF 135 (319)
T ss_pred cc------chHHHHHHHHHHHhcCCCCCCCceEEEEeCcccCCHH---------------HHHHHHHHHhcCCCC--CeE
Confidence 21 11122222222211 23569999999988432 124566666654433 345
Q ss_pred EEecCCCCCCChhhhCCCCcceEEEecCCCHHHHHHHHHHHHhcCCCCCCCCCCHHHHHHhCCCCCHHHHHHHHHHHHHH
Q 007575 475 LGATNRSDVLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTTGFTGADLANLVNEAALL 554 (597)
Q Consensus 475 IaaTNrpd~LD~aLlRpgRFd~~I~v~~Pd~~eR~eILk~~l~~~~~~l~~dvdl~~LA~~t~G~SgaDL~~Lv~eAal~ 554 (597)
|.++|.+..+.+++.+ |+. .+.+++++.++...+++.++.+.++.+.++ .++.++..+.| +.+.+.+.++.++..
T Consensus 136 Il~~~~~~~l~~~l~s--r~~-~~~~~~l~~~ei~~~l~~~~~~~~~~i~~~-al~~l~~~~~g-d~r~~~~~l~~~~~~ 210 (319)
T PRK00440 136 ILSCNYSSKIIDPIQS--RCA-VFRFSPLKKEAVAERLRYIAENEGIEITDD-ALEAIYYVSEG-DMRKAINALQAAAAT 210 (319)
T ss_pred EEEeCCccccchhHHH--Hhh-eeeeCCCCHHHHHHHHHHHHHHcCCCCCHH-HHHHHHHHcCC-CHHHHHHHHHHHHHc
Confidence 5566777777778887 775 689999999999999999998877777665 48888888765 555666666554432
Q ss_pred HHhcCCCcccHHHHHHHH
Q 007575 555 AGRLNKVVVEKIDFIHAV 572 (597)
Q Consensus 555 A~r~~~~~It~~d~~~Al 572 (597)
...||.+++..++
T Consensus 211 -----~~~it~~~v~~~~ 223 (319)
T PRK00440 211 -----GKEVTEEAVYKIT 223 (319)
T ss_pred -----CCCCCHHHHHHHh
Confidence 2468888777664
No 122
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=99.57 E-value=1.2e-13 Score=148.88 Aligned_cols=244 Identities=20% Similarity=0.236 Sum_probs=169.6
Q ss_pred cCCCCcccccccCChHHHHHHHHHHHHhcChhHHhhcCCCCCCceEEeCCCCChHHHHHHHHHHhc-----CCCeeeech
Q 007575 324 EQGDTITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEA-----EVPFISCSA 398 (597)
Q Consensus 324 ~~~~~vtf~dV~G~de~k~~L~eiv~~l~~p~~~~~lg~~~p~gVLL~GPPGTGKT~LArAIA~el-----~~pfi~is~ 398 (597)
.-.++.+|++++.-+.-.....-.......|.. .-..++||||.|.|||+|++|+++++ +.-+++++.
T Consensus 79 ~l~~~ytFdnFv~g~~N~~A~aa~~~va~~~g~-------~~nplfi~G~~GlGKTHLl~Aign~~~~~~~~a~v~y~~s 151 (408)
T COG0593 79 GLNPKYTFDNFVVGPSNRLAYAAAKAVAENPGG-------AYNPLFIYGGVGLGKTHLLQAIGNEALANGPNARVVYLTS 151 (408)
T ss_pred cCCCCCchhheeeCCchHHHHHHHHHHHhccCC-------cCCcEEEECCCCCCHHHHHHHHHHHHHhhCCCceEEeccH
Confidence 345789999988777765555555444444421 33469999999999999999999876 346888999
Q ss_pred hhhHHHHhhcchHHHHHHHHHHHhcCCeEEEEcCcchhhhhcCCcccccchhHHHHHHHHHHHHhcCCCCCCcEEEEEec
Q 007575 399 SEFVELYVGMGASRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGAT 478 (597)
Q Consensus 399 sef~~~~vG~~e~~vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~eqtLnqLL~emdg~~~~~~VIVIaaT 478 (597)
.+|...++......-.+-|++-. .-.+++||+|+.+..+.. ..++.-.++|.+ ....+-||+++.
T Consensus 152 e~f~~~~v~a~~~~~~~~Fk~~y--~~dlllIDDiq~l~gk~~------~qeefFh~FN~l-------~~~~kqIvltsd 216 (408)
T COG0593 152 EDFTNDFVKALRDNEMEKFKEKY--SLDLLLIDDIQFLAGKER------TQEEFFHTFNAL-------LENGKQIVLTSD 216 (408)
T ss_pred HHHHHHHHHHHHhhhHHHHHHhh--ccCeeeechHhHhcCChh------HHHHHHHHHHHH-------HhcCCEEEEEcC
Confidence 99988877665444445566655 445999999999975532 123333333333 334556777777
Q ss_pred CCCCCC---ChhhhCCCCcc--eEEEecCCCHHHHHHHHHHHHhcCCCCCCCCCCHHHHHHhCCCCCHHHHHHHHHHHHH
Q 007575 479 NRSDVL---DPALRRPGRFD--RVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTTGFTGADLANLVNEAAL 553 (597)
Q Consensus 479 Nrpd~L---D~aLlRpgRFd--~~I~v~~Pd~~eR~eILk~~l~~~~~~l~~dvdl~~LA~~t~G~SgaDL~~Lv~eAal 553 (597)
..|..+ .+.|.+ ||. ..+.+.+||.+.|.+||+..+...++.+.+++ +..+|.+.. -+.++|..+++....
T Consensus 217 r~P~~l~~~~~rL~S--R~~~Gl~~~I~~Pd~e~r~aiL~kka~~~~~~i~~ev-~~~la~~~~-~nvReLegaL~~l~~ 292 (408)
T COG0593 217 RPPKELNGLEDRLRS--RLEWGLVVEIEPPDDETRLAILRKKAEDRGIEIPDEV-LEFLAKRLD-RNVRELEGALNRLDA 292 (408)
T ss_pred CCchhhccccHHHHH--HHhceeEEeeCCCCHHHHHHHHHHHHHhcCCCCCHHH-HHHHHHHhh-ccHHHHHHHHHHHHH
Confidence 777554 589988 875 56788899999999999999988888888775 788888876 478899988888777
Q ss_pred HHHhcCCCcccHHHHHHHHHHH---------------------------hccccccccccchhhhhhc
Q 007575 554 LAGRLNKVVVEKIDFIHAVERS---------------------------IAVSLSLSLSLSLQASISL 594 (597)
Q Consensus 554 ~A~r~~~~~It~~d~~~Al~~v---------------------------~~g~~k~s~~ls~q~~l~l 594 (597)
.|...+. .||.+.+.+++... .....+++.+..+|-+|+|
T Consensus 293 ~a~~~~~-~iTi~~v~e~L~~~~~~~~~itie~I~~~Va~~y~v~~~dl~s~~R~~~i~~~RqiamyL 359 (408)
T COG0593 293 FALFTKR-AITIDLVKEILKDLLRAGEKITIEDIQKIVAEYYNVKVSDLLSKSRTRNIVRPRQIAMYL 359 (408)
T ss_pred HHHhcCc-cCcHHHHHHHHHHhhcccccCCHHHHHHHHHHHhCCCHHHhhccccccccchHHHHHHHH
Confidence 7655443 44444444444433 3444455666777777665
No 123
>KOG2004 consensus Mitochondrial ATP-dependent protease PIM1/LON [Posttranslational modification, protein turnover, chaperones]
Probab=99.57 E-value=2.4e-14 Score=159.43 Aligned_cols=163 Identities=27% Similarity=0.419 Sum_probs=130.6
Q ss_pred ccccCChHHHHHHHHHHHH--hcChhHHhhcCCCCCCceEEeCCCCChHHHHHHHHHHhcCCCeeeechhhhHH------
Q 007575 332 ADVAGVDEAKEELEEIVEF--LRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFVE------ 403 (597)
Q Consensus 332 ~dV~G~de~k~~L~eiv~~--l~~p~~~~~lg~~~p~gVLL~GPPGTGKT~LArAIA~el~~pfi~is~sef~~------ 403 (597)
+|-.|++++|+++.|++.- ++ |....+-+.|+||||+|||++++.||..+|..|+.++...+..
T Consensus 411 eDHYgm~dVKeRILEfiAV~kLr--------gs~qGkIlCf~GPPGVGKTSI~kSIA~ALnRkFfRfSvGG~tDvAeIkG 482 (906)
T KOG2004|consen 411 EDHYGMEDVKERILEFIAVGKLR--------GSVQGKILCFVGPPGVGKTSIAKSIARALNRKFFRFSVGGMTDVAEIKG 482 (906)
T ss_pred ccccchHHHHHHHHHHHHHHhhc--------ccCCCcEEEEeCCCCCCcccHHHHHHHHhCCceEEEeccccccHHhhcc
Confidence 4789999999999998763 32 2334566889999999999999999999999999998653322
Q ss_pred ---HHhhcchHHHHHHHHHHHhcCCeEEEEcCcchhhhhcCCcccccchhHHHHHHHHHHHHhcCCC-------------
Q 007575 404 ---LYVGMGASRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFD------------- 467 (597)
Q Consensus 404 ---~~vG~~e~~vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~eqtLnqLL~emdg~~------------- 467 (597)
.|+|....++-+.+..+....| +++|||||.+++.-+++- -..||..||--+
T Consensus 483 HRRTYVGAMPGkiIq~LK~v~t~NP-liLiDEvDKlG~g~qGDP-----------asALLElLDPEQNanFlDHYLdVp~ 550 (906)
T KOG2004|consen 483 HRRTYVGAMPGKIIQCLKKVKTENP-LILIDEVDKLGSGHQGDP-----------ASALLELLDPEQNANFLDHYLDVPV 550 (906)
T ss_pred cceeeeccCChHHHHHHHhhCCCCc-eEEeehhhhhCCCCCCCh-----------HHHHHHhcChhhccchhhhcccccc
Confidence 3899999999999999999999 999999999995333211 134555554211
Q ss_pred CCCcEEEEEecCCCCCCChhhhCCCCcceEEEecCCCHHHHHHHHHHHHh
Q 007575 468 SNSAVIVLGATNRSDVLDPALRRPGRFDRVVMVETPDKIGREAILKVHVS 517 (597)
Q Consensus 468 ~~~~VIVIaaTNrpd~LD~aLlRpgRFd~~I~v~~Pd~~eR~eILk~~l~ 517 (597)
.-+.|++|||.|..+.++++|+. |+. .|.+.-+..+|..+|.+.|+-
T Consensus 551 DLSkVLFicTAN~idtIP~pLlD--RME-vIelsGYv~eEKv~IA~~yLi 597 (906)
T KOG2004|consen 551 DLSKVLFICTANVIDTIPPPLLD--RME-VIELSGYVAEEKVKIAERYLI 597 (906)
T ss_pred chhheEEEEeccccccCChhhhh--hhh-eeeccCccHHHHHHHHHHhhh
Confidence 12579999999999999999998 885 899999999999999998874
No 124
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.57 E-value=1.4e-13 Score=156.39 Aligned_cols=214 Identities=16% Similarity=0.212 Sum_probs=148.8
Q ss_pred CCCcccccccCChHHHHHHHHHHHHhcChhHHhhcCCCCCCceEEeCCCCChHHHHHHHHHHhcCCCee-----------
Q 007575 326 GDTITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFI----------- 394 (597)
Q Consensus 326 ~~~vtf~dV~G~de~k~~L~eiv~~l~~p~~~~~lg~~~p~gVLL~GPPGTGKT~LArAIA~el~~pfi----------- 394 (597)
..+.+|++++|++.+++.|+..+. ..+.+..+||+||+|||||++|+++|+.+.+.--
T Consensus 10 yRP~~f~eivGQe~i~~~L~~~i~-----------~~ri~ha~Lf~Gp~GvGKttlA~~lAk~L~c~~~~~~~~~~~~~~ 78 (620)
T PRK14954 10 YRPSKFADITAQEHITHTIQNSLR-----------MDRVGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDPVYLQEVT 78 (620)
T ss_pred HCCCCHHHhcCcHHHHHHHHHHHH-----------cCCCCeeEEEECCCCCCHHHHHHHHHHHhCCCCcCCccccccccC
Confidence 456789999999999999888765 2356678999999999999999999999876210
Q ss_pred e-----echhhhHH-------HHhh---cchHHHHHHHHHHHh----cCCeEEEEcCcchhhhhcCCcccccchhHHHHH
Q 007575 395 S-----CSASEFVE-------LYVG---MGASRVRDLFARAKK----EAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQT 455 (597)
Q Consensus 395 ~-----is~sef~~-------~~vG---~~e~~vr~lF~~A~~----~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~eqt 455 (597)
. -+|..+.. .+.+ .+...++++.+.+.. ....|++|||+|.+.. ..
T Consensus 79 ~~Cg~C~sC~~~~~g~~~n~~~~d~~s~~~vd~Ir~l~e~~~~~P~~~~~KVvIIdEad~Lt~---------------~a 143 (620)
T PRK14954 79 EPCGECESCRDFDAGTSLNISEFDAASNNSVDDIRQLRENVRYGPQKGRYRVYIIDEVHMLST---------------AA 143 (620)
T ss_pred CCCccCHHHHHHhccCCCCeEEecccccCCHHHHHHHHHHHHhhhhcCCCEEEEEeChhhcCH---------------HH
Confidence 0 01111110 0111 124566776666532 3346999999998852 23
Q ss_pred HHHHHHHhcCCCCCCcEEEEEecCCCCCCChhhhCCCCcceEEEecCCCHHHHHHHHHHHHhcCCCCCCCCCCHHHHHHh
Q 007575 456 LNQLLTEMDGFDSNSAVIVLGATNRSDVLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASM 535 (597)
Q Consensus 456 LnqLL~emdg~~~~~~VIVIaaTNrpd~LD~aLlRpgRFd~~I~v~~Pd~~eR~eILk~~l~~~~~~l~~dvdl~~LA~~ 535 (597)
.|.|+..|+... ..+++|.+|+.++.|.+.+.+ |. ..+.+..++.++....+...+...+..+.++ .++.|+..
T Consensus 144 ~naLLK~LEePp--~~tv~IL~t~~~~kLl~TI~S--Rc-~~vef~~l~~~ei~~~L~~i~~~egi~I~~e-al~~La~~ 217 (620)
T PRK14954 144 FNAFLKTLEEPP--PHAIFIFATTELHKIPATIAS--RC-QRFNFKRIPLDEIQSQLQMICRAEGIQIDAD-ALQLIARK 217 (620)
T ss_pred HHHHHHHHhCCC--CCeEEEEEeCChhhhhHHHHh--hc-eEEecCCCCHHHHHHHHHHHHHHcCCCCCHH-HHHHHHHH
Confidence 578999888533 345555566677888888888 66 4899999999999988888887766666555 47888888
Q ss_pred CCCCCHHHHHHHHHHHHHHHHh-cCCCcccHHHHHHHH
Q 007575 536 TTGFTGADLANLVNEAALLAGR-LNKVVVEKIDFIHAV 572 (597)
Q Consensus 536 t~G~SgaDL~~Lv~eAal~A~r-~~~~~It~~d~~~Al 572 (597)
+.| +.+++.+.++....++.. .....|+.+++++.+
T Consensus 218 s~G-dlr~al~eLeKL~~y~~~~~~~~~It~~~V~~lv 254 (620)
T PRK14954 218 AQG-SMRDAQSILDQVIAFSVGSEAEKVIAYQGVAELL 254 (620)
T ss_pred hCC-CHHHHHHHHHHHHHhccccccCCccCHHHHHHHH
Confidence 865 677777777776655521 224567877776654
No 125
>PRK06620 hypothetical protein; Validated
Probab=99.57 E-value=6.8e-14 Score=139.74 Aligned_cols=199 Identities=15% Similarity=0.212 Sum_probs=132.9
Q ss_pred CCCcccccccCChHHHHHHHHHHHHhcChhHHhhcCCCC-CCceEEeCCCCChHHHHHHHHHHhcCCCeeeechhhhHHH
Q 007575 326 GDTITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARP-PRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFVEL 404 (597)
Q Consensus 326 ~~~vtf~dV~G~de~k~~L~eiv~~l~~p~~~~~lg~~~-p~gVLL~GPPGTGKT~LArAIA~el~~pfi~is~sef~~~ 404 (597)
.++.+|++++-.+.-...+..+..+...+ +..+ ...++||||||+|||+|++++++..+..++. .....
T Consensus 10 ~~~~tfd~Fvvg~~N~~a~~~~~~~~~~~------~~~~~~~~l~l~Gp~G~GKThLl~a~~~~~~~~~~~--~~~~~-- 79 (214)
T PRK06620 10 SSKYHPDEFIVSSSNDQAYNIIKNWQCGF------GVNPYKFTLLIKGPSSSGKTYLTKIWQNLSNAYIIK--DIFFN-- 79 (214)
T ss_pred CCCCCchhhEecccHHHHHHHHHHHHHcc------ccCCCcceEEEECCCCCCHHHHHHHHHhccCCEEcc--hhhhc--
Confidence 45678998776664433333333332221 1122 2579999999999999999999988764433 11110
Q ss_pred HhhcchHHHHHHHHHHHhcCCeEEEEcCcchhhhhcCCcccccchhHHHHHHHHHHHHhcCCCCCCcEEEEEecCCCCC-
Q 007575 405 YVGMGASRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATNRSDV- 483 (597)
Q Consensus 405 ~vG~~e~~vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~eqtLnqLL~emdg~~~~~~VIVIaaTNrpd~- 483 (597)
.+.+ ....+|+|||||.+- +..+-.+++.+. .....+||+++..|..
T Consensus 80 ---------~~~~-----~~~d~lliDdi~~~~---------------~~~lf~l~N~~~---e~g~~ilits~~~p~~l 127 (214)
T PRK06620 80 ---------EEIL-----EKYNAFIIEDIENWQ---------------EPALLHIFNIIN---EKQKYLLLTSSDKSRNF 127 (214)
T ss_pred ---------hhHH-----hcCCEEEEeccccch---------------HHHHHHHHHHHH---hcCCEEEEEcCCCcccc
Confidence 0111 123599999999541 112233333332 3455788888876654
Q ss_pred -CChhhhCCCCcc--eEEEecCCCHHHHHHHHHHHHhcCCCCCCCCCCHHHHHHhCCCCCHHHHHHHHHHHHHHHHhcCC
Q 007575 484 -LDPALRRPGRFD--RVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTTGFTGADLANLVNEAALLAGRLNK 560 (597)
Q Consensus 484 -LD~aLlRpgRFd--~~I~v~~Pd~~eR~eILk~~l~~~~~~l~~dvdl~~LA~~t~G~SgaDL~~Lv~eAal~A~r~~~ 560 (597)
+ ++|++ |+. .++.+..|+.+++.++++.++...++.+.+++ ++.|+.+..+ +.+.+.++++.....+...+
T Consensus 128 ~l-~~L~S--Rl~~gl~~~l~~pd~~~~~~~l~k~~~~~~l~l~~ev-~~~L~~~~~~-d~r~l~~~l~~l~~~~~~~~- 201 (214)
T PRK06620 128 TL-PDLSS--RIKSVLSILLNSPDDELIKILIFKHFSISSVTISRQI-IDFLLVNLPR-EYSKIIEILENINYFALISK- 201 (214)
T ss_pred ch-HHHHH--HHhCCceEeeCCCCHHHHHHHHHHHHHHcCCCCCHHH-HHHHHHHccC-CHHHHHHHHHHHHHHHHHcC-
Confidence 5 78888 774 47899999999999999999887778887775 8899998875 78899999988654444433
Q ss_pred CcccHHHHHHHH
Q 007575 561 VVVEKIDFIHAV 572 (597)
Q Consensus 561 ~~It~~d~~~Al 572 (597)
..||...+++++
T Consensus 202 ~~it~~~~~~~l 213 (214)
T PRK06620 202 RKITISLVKEVL 213 (214)
T ss_pred CCCCHHHHHHHh
Confidence 568988887765
No 126
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.56 E-value=1.5e-13 Score=155.94 Aligned_cols=211 Identities=19% Similarity=0.241 Sum_probs=146.0
Q ss_pred cCCCCcccccccCChHHHHHHHHHHHHhcChhHHhhcCCCCCCceEEeCCCCChHHHHHHHHHHhcCCCee-----eec-
Q 007575 324 EQGDTITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFI-----SCS- 397 (597)
Q Consensus 324 ~~~~~vtf~dV~G~de~k~~L~eiv~~l~~p~~~~~lg~~~p~gVLL~GPPGTGKT~LArAIA~el~~pfi-----~is- 397 (597)
+.....+|+||+|++.+++.|...+.. .+.+..+||+||||+|||++|+++|+.+++..- .|.
T Consensus 8 ~kyRP~~~~eiiGq~~~~~~L~~~i~~-----------~~i~~a~Lf~Gp~G~GKTtlA~~lA~~l~c~~~~~~~~~c~~ 76 (585)
T PRK14950 8 RKWRSQTFAELVGQEHVVQTLRNAIAE-----------GRVAHAYLFTGPRGVGKTSTARILAKAVNCTTNDPKGRPCGT 76 (585)
T ss_pred HHhCCCCHHHhcCCHHHHHHHHHHHHh-----------CCCceEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCcc
Confidence 344568899999999999999887762 234566899999999999999999998764221 010
Q ss_pred hh---hhHH--------HH--hhcchHHHHHHHHHHHh----cCCeEEEEcCcchhhhhcCCcccccchhHHHHHHHHHH
Q 007575 398 AS---EFVE--------LY--VGMGASRVRDLFARAKK----EAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLL 460 (597)
Q Consensus 398 ~s---ef~~--------~~--vG~~e~~vr~lF~~A~~----~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~eqtLnqLL 460 (597)
|. .+.. .. ...+...++++.+.+.. ....||+|||+|.|.. ..+|.|+
T Consensus 77 c~~c~~i~~~~~~d~~~i~~~~~~~vd~ir~ii~~~~~~p~~~~~kVvIIDEa~~L~~---------------~a~naLL 141 (585)
T PRK14950 77 CEMCRAIAEGSAVDVIEMDAASHTSVDDAREIIERVQFRPALARYKVYIIDEVHMLST---------------AAFNALL 141 (585)
T ss_pred CHHHHHHhcCCCCeEEEEeccccCCHHHHHHHHHHHhhCcccCCeEEEEEeChHhCCH---------------HHHHHHH
Confidence 11 1100 00 01223445666554432 2345999999998752 3457888
Q ss_pred HHhcCCCCCCcEEEEEecCCCCCCChhhhCCCCcceEEEecCCCHHHHHHHHHHHHhcCCCCCCCCCCHHHHHHhCCCCC
Q 007575 461 TEMDGFDSNSAVIVLGATNRSDVLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTTGFT 540 (597)
Q Consensus 461 ~emdg~~~~~~VIVIaaTNrpd~LD~aLlRpgRFd~~I~v~~Pd~~eR~eILk~~l~~~~~~l~~dvdl~~LA~~t~G~S 540 (597)
..|+... ..+++|.+++..+.+.+.+.+ |+. .+.|..++..+...+++..+.+.++.+.++ .+..|+..+.| +
T Consensus 142 k~LEepp--~~tv~Il~t~~~~kll~tI~S--R~~-~i~f~~l~~~el~~~L~~~a~~egl~i~~e-al~~La~~s~G-d 214 (585)
T PRK14950 142 KTLEEPP--PHAIFILATTEVHKVPATILS--RCQ-RFDFHRHSVADMAAHLRKIAAAEGINLEPG-ALEAIARAATG-S 214 (585)
T ss_pred HHHhcCC--CCeEEEEEeCChhhhhHHHHh--ccc-eeeCCCCCHHHHHHHHHHHHHHcCCCCCHH-HHHHHHHHcCC-C
Confidence 8888543 345666667777778888887 664 689999999999999998888777766655 47788888876 7
Q ss_pred HHHHHHHHHHHHHHHHhcCCCcccHHHHHHH
Q 007575 541 GADLANLVNEAALLAGRLNKVVVEKIDFIHA 571 (597)
Q Consensus 541 gaDL~~Lv~eAal~A~r~~~~~It~~d~~~A 571 (597)
.+++.+.++..+.+ ....|+.+++++.
T Consensus 215 lr~al~~LekL~~y----~~~~It~e~V~~l 241 (585)
T PRK14950 215 MRDAENLLQQLATT----YGGEISLSQVQSL 241 (585)
T ss_pred HHHHHHHHHHHHHh----cCCCCCHHHHHHH
Confidence 88888888875543 2345777776553
No 127
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=99.55 E-value=4e-14 Score=145.44 Aligned_cols=194 Identities=23% Similarity=0.239 Sum_probs=139.7
Q ss_pred ccCCCCcccccccCChHHHHHHHHHHHHhcChhHHhhcCCCCCCceEEeCCCCChHHHHHHHHHHhcCCC------eeee
Q 007575 323 SEQGDTITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVP------FISC 396 (597)
Q Consensus 323 ~~~~~~vtf~dV~G~de~k~~L~eiv~~l~~p~~~~~lg~~~p~gVLL~GPPGTGKT~LArAIA~el~~p------fi~i 396 (597)
.+...+.+|+|++|++.+.+.|...+.. +.-.++|||||||||||+.|+++|.+++.| +.+.
T Consensus 27 teKYrPkt~de~~gQe~vV~~L~~a~~~------------~~lp~~LFyGPpGTGKTStalafar~L~~~~~~~~rvl~l 94 (346)
T KOG0989|consen 27 TEKYRPKTFDELAGQEHVVQVLKNALLR------------RILPHYLFYGPPGTGKTSTALAFARALNCEQLFPCRVLEL 94 (346)
T ss_pred HHHhCCCcHHhhcchHHHHHHHHHHHhh------------cCCceEEeeCCCCCcHhHHHHHHHHHhcCccccccchhhh
Confidence 4556788999999999999999988864 223369999999999999999999998652 2333
Q ss_pred chhhhHHHHhhcchHHHHHHHHHHHh------cCC----eEEEEcCcchhhhhcCCcccccchhHHHHHHHHHHHHhcCC
Q 007575 397 SASEFVELYVGMGASRVRDLFARAKK------EAP----SIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGF 466 (597)
Q Consensus 397 s~sef~~~~vG~~e~~vr~lF~~A~~------~aP----~ILfIDEIDaL~~~r~~~~~~~~~~e~eqtLnqLL~emdg~ 466 (597)
+.++..+..++. ..+. -|.+... ..| .|++|||.|.+... +.+.|...|+.+
T Consensus 95 naSderGisvvr--~Kik-~fakl~~~~~~~~~~~~~~fKiiIlDEcdsmtsd---------------aq~aLrr~mE~~ 156 (346)
T KOG0989|consen 95 NASDERGISVVR--EKIK-NFAKLTVLLKRSDGYPCPPFKIIILDECDSMTSD---------------AQAALRRTMEDF 156 (346)
T ss_pred cccccccccchh--hhhc-CHHHHhhccccccCCCCCcceEEEEechhhhhHH---------------HHHHHHHHHhcc
Confidence 444433322111 1111 1222221 122 59999999999744 347888889875
Q ss_pred CCCCcEEEEEecCCCCCCChhhhCCCCcceEEEecCCCHHHHHHHHHHHHhcCCCCCCCCCCHHHHHHhCCCCCHHHHHH
Q 007575 467 DSNSAVIVLGATNRSDVLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTTGFTGADLAN 546 (597)
Q Consensus 467 ~~~~~VIVIaaTNrpd~LD~aLlRpgRFd~~I~v~~Pd~~eR~eILk~~l~~~~~~l~~dvdl~~LA~~t~G~SgaDL~~ 546 (597)
.. .+.+|..||..+.|...+.+ |.. .+.|+..+.+.....|+..+.+.+++++++. ++.|+..+.| +-++...
T Consensus 157 s~--~trFiLIcnylsrii~pi~S--RC~-KfrFk~L~d~~iv~rL~~Ia~~E~v~~d~~a-l~~I~~~S~G-dLR~Ait 229 (346)
T KOG0989|consen 157 SR--TTRFILICNYLSRIIRPLVS--RCQ-KFRFKKLKDEDIVDRLEKIASKEGVDIDDDA-LKLIAKISDG-DLRRAIT 229 (346)
T ss_pred cc--ceEEEEEcCChhhCChHHHh--hHH-HhcCCCcchHHHHHHHHHHHHHhCCCCCHHH-HHHHHHHcCC-cHHHHHH
Confidence 44 45777789999999999988 775 6788888888888888888888888887774 8888988876 5666666
Q ss_pred HHHHHHH
Q 007575 547 LVNEAAL 553 (597)
Q Consensus 547 Lv~eAal 553 (597)
.++.++.
T Consensus 230 ~Lqsls~ 236 (346)
T KOG0989|consen 230 TLQSLSL 236 (346)
T ss_pred HHHHhhc
Confidence 6666655
No 128
>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit. This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment.
Probab=99.55 E-value=5.6e-14 Score=151.48 Aligned_cols=240 Identities=26% Similarity=0.371 Sum_probs=157.7
Q ss_pred cccCChHHHHHHHHHHHH-hcChhHHhhc-CCCCCCceEEeCCCCChHHHHHHHHHHhcCCCeeeechhhhHH-HHhh-c
Q 007575 333 DVAGVDEAKEELEEIVEF-LRSPDKYIRL-GARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFVE-LYVG-M 408 (597)
Q Consensus 333 dV~G~de~k~~L~eiv~~-l~~p~~~~~l-g~~~p~gVLL~GPPGTGKT~LArAIA~el~~pfi~is~sef~~-~~vG-~ 408 (597)
.|+|++++|+.+...+.. .+.......+ ....|+++||+||||||||++|+++|..++.||+.+++.++.+ .|+| .
T Consensus 13 ~IiGQ~eAkk~lsvAl~n~~~r~~~~~~~~~e~~p~~ILLiGppG~GKT~lAraLA~~l~~~fi~vdat~~~e~g~vG~d 92 (441)
T TIGR00390 13 YIIGQDNAKKSVAIALRNRYRRSQLNEELKDEVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGRD 92 (441)
T ss_pred hccCHHHHHHHHHHHHHhhhhhhccccccccccCCceEEEECCCCCCHHHHHHHHHHHhCCeEEEeecceeecCCcccCC
Confidence 489999999999877753 1211110011 1235789999999999999999999999999999999988865 5766 4
Q ss_pred chHHHHHHHHHHH-------------------------------------------------------------------
Q 007575 409 GASRVRDLFARAK------------------------------------------------------------------- 421 (597)
Q Consensus 409 ~e~~vr~lF~~A~------------------------------------------------------------------- 421 (597)
.++.++++|..|.
T Consensus 93 vE~i~r~l~e~A~~~i~~d~i~~~r~~a~~~ae~riv~~Ll~~~~~~~~~~~~~~~~~~~r~~~~~~l~~g~ldd~~iei 172 (441)
T TIGR00390 93 VESMVRDLTDAAVKLVKEEAIEKVRDRAEELAEERIVDVLLPPAKNQWGQTEQQQEPESAREAFRKKLREGELDDKEIEI 172 (441)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhcCCccccccccccccchHHHHHHHHHHHhcCCccCcEEEE
Confidence 5566666665550
Q ss_pred ------------------------------------------------------------------------hcCCeEEE
Q 007575 422 ------------------------------------------------------------------------KEAPSIIF 429 (597)
Q Consensus 422 ------------------------------------------------------------------------~~aP~ILf 429 (597)
...-.|||
T Consensus 173 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ea~~~l~~~e~~~lid~~~v~~~a~~~~e~~GIVf 252 (441)
T TIGR00390 173 DVSAKMPSGIEIMAPPGMEEMTMQLQSLFQNLGGQKKKKRKLKIKDAKKALIAEEAAKLVDPEEIKQEAIDAVEQSGIIF 252 (441)
T ss_pred eecCCCCCccccCCCcchhHHHhhHHHHHHhhcCCCCceEEeEHHHHHHHHHHHHHHhccChHHHHHHHHHHHHcCCEEE
Confidence 01234999
Q ss_pred EcCcchhhhhcCCcccccchhHHHHHHHHHHHHhcCCC--------CCCcEEEEEecC----CCCCCChhhhCCCCcceE
Q 007575 430 IDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFD--------SNSAVIVLGATN----RSDVLDPALRRPGRFDRV 497 (597)
Q Consensus 430 IDEIDaL~~~r~~~~~~~~~~e~eqtLnqLL~emdg~~--------~~~~VIVIaaTN----rpd~LD~aLlRpgRFd~~ 497 (597)
|||||.++.+... .+.+-..+.+...||..|+|-. ...+|++|++.- .|++|-|.|.- ||..+
T Consensus 253 iDEiDKIa~~~~~---~~~DvS~eGVQ~~LLkilEGt~v~~k~~~v~T~~ILFI~~GAF~~~kp~DlIPEl~G--R~Pi~ 327 (441)
T TIGR00390 253 IDEIDKIAKKGES---SGADVSREGVQRDLLPIVEGSTVNTKYGMVKTDHILFIAAGAFQLAKPSDLIPELQG--RFPIR 327 (441)
T ss_pred EEchhhhcccCCC---CCCCCCccchhccccccccCceeeecceeEECCceeEEecCCcCCCChhhccHHHhC--ccceE
Confidence 9999999976522 1223344667788999998742 245788887763 46677788865 99999
Q ss_pred EEecCCCHHHHHHHHH----HHH-------hcCCCCC--CCCCCHHHHHHhC-------CCCCHHHHHHHHHHH----HH
Q 007575 498 VMVETPDKIGREAILK----VHV-------SKKELPL--AKDIDLGDIASMT-------TGFTGADLANLVNEA----AL 553 (597)
Q Consensus 498 I~v~~Pd~~eR~eILk----~~l-------~~~~~~l--~~dvdl~~LA~~t-------~G~SgaDL~~Lv~eA----al 553 (597)
+.+..++.++...||. ..+ ...++.+ .++ .+..||+.. .+.-.+-|..++... ..
T Consensus 328 v~L~~L~~edL~rILteP~nsLikQy~~Lf~~egv~L~Ftd~-Al~~IA~~A~~~N~~~~~iGAR~LrtilE~~l~d~~f 406 (441)
T TIGR00390 328 VELQALTTDDFERILTEPKNSLIKQYKALMKTEGVNIEFSDE-AIKRIAELAYNVNEKTENIGARRLHTVLERLLEDISF 406 (441)
T ss_pred EECCCCCHHHHHHHhcCChhHHHHHHHHHHhhcCcEEEEeHH-HHHHHHHHHHHhcccccccchhhHHHHHHHHHHHHHh
Confidence 9999999999988872 122 1122222 222 366666554 232234455554444 33
Q ss_pred HHHhc--CCCcccHHHHHHHHHHHhcc
Q 007575 554 LAGRL--NKVVVEKIDFIHAVERSIAV 578 (597)
Q Consensus 554 ~A~r~--~~~~It~~d~~~Al~~v~~g 578 (597)
.+-.. ....|+.+.+...+..++..
T Consensus 407 e~p~~~~~~v~I~~~~V~~~l~~~~~~ 433 (441)
T TIGR00390 407 EAPDLSGQNITIDADYVSKKLGALVAD 433 (441)
T ss_pred cCCCCCCCEEEECHHHHHhHHHHHHhc
Confidence 33221 23457777777777776644
No 129
>PRK05201 hslU ATP-dependent protease ATP-binding subunit HslU; Provisional
Probab=99.55 E-value=7.1e-14 Score=150.74 Aligned_cols=241 Identities=24% Similarity=0.336 Sum_probs=160.4
Q ss_pred cccCChHHHHHHHHHHHH-hcChhHHhhcC-CCCCCceEEeCCCCChHHHHHHHHHHhcCCCeeeechhhhHH-HHhh-c
Q 007575 333 DVAGVDEAKEELEEIVEF-LRSPDKYIRLG-ARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFVE-LYVG-M 408 (597)
Q Consensus 333 dV~G~de~k~~L~eiv~~-l~~p~~~~~lg-~~~p~gVLL~GPPGTGKT~LArAIA~el~~pfi~is~sef~~-~~vG-~ 408 (597)
.|+|++++|+.+...+.. ++......... -..|.++||+||||||||++|+++|..++.||+.+++++|.+ .|+| .
T Consensus 16 ~IiGQe~AkkalavAl~~~~~r~~l~~~~~~e~~~~~ILliGp~G~GKT~LAr~LAk~l~~~fi~vD~t~f~e~GyvG~d 95 (443)
T PRK05201 16 YIIGQDDAKRAVAIALRNRWRRMQLPEELRDEVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGRD 95 (443)
T ss_pred ccCCHHHHHHHHHHHHHHHHHHhcCCcccccccCCceEEEECCCCCCHHHHHHHHHHHhCChheeecchhhccCCcccCC
Confidence 399999999999887743 11110000000 123689999999999999999999999999999999999987 4877 4
Q ss_pred chHHHHHHHHHHH-------------------------------------------------------------------
Q 007575 409 GASRVRDLFARAK------------------------------------------------------------------- 421 (597)
Q Consensus 409 ~e~~vr~lF~~A~------------------------------------------------------------------- 421 (597)
.+..++++|..|.
T Consensus 96 ~e~~ir~L~~~A~~~~~~~~~~~~~~~a~~~~e~ri~~~l~~~~~~~~~~~~~~~~~~~~r~~~~~~l~~g~ldd~~iei 175 (443)
T PRK05201 96 VESIIRDLVEIAVKMVREEKREKVREKAEEAAEERILDALLPPAKNNWGEEEEKEEISATRQKFRKKLREGELDDKEIEI 175 (443)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhCCCccCCccccccchhhhHHHHHHHHHHHcCCcCCcEEEE
Confidence 4667777776661
Q ss_pred ---h--------------------------------------------------------------------cCCeEEEE
Q 007575 422 ---K--------------------------------------------------------------------EAPSIIFI 430 (597)
Q Consensus 422 ---~--------------------------------------------------------------------~aP~ILfI 430 (597)
. ..-.||||
T Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~eA~~~l~~~e~~~lid~~~v~~~ai~~ae~~GIVfi 255 (443)
T PRK05201 176 EVAEAAPMMEIMGPPGMEEMTIQLQDMFGNLGPKKKKKRKLKVKEARKILIEEEAAKLIDMEEIKQEAIERVEQNGIVFI 255 (443)
T ss_pred EecCCCCcccCCCCcchhHHHHHHHHHHHhhCCCCCceEEeEHHHHHHHHHHHHHHhccChHHHHHHHHHHHHcCCEEEE
Confidence 0 12249999
Q ss_pred cCcchhhhhcCCcccccchhHHHHHHHHHHHHhcCCC--------CCCcEEEEEec----CCCCCCChhhhCCCCcceEE
Q 007575 431 DEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFD--------SNSAVIVLGAT----NRSDVLDPALRRPGRFDRVV 498 (597)
Q Consensus 431 DEIDaL~~~r~~~~~~~~~~e~eqtLnqLL~emdg~~--------~~~~VIVIaaT----Nrpd~LD~aLlRpgRFd~~I 498 (597)
||||.|+.+.+. .+.+-..+.+...||..|+|-. +...|++||+. ..|++|-|.|.- ||..++
T Consensus 256 DEiDKIa~~~~~---~~~DvS~eGVQ~~LLki~EG~~v~~k~~~i~T~~ILFI~~GAF~~~kp~DlIPEl~G--R~Pi~v 330 (443)
T PRK05201 256 DEIDKIAARGGS---SGPDVSREGVQRDLLPLVEGSTVSTKYGMVKTDHILFIASGAFHVSKPSDLIPELQG--RFPIRV 330 (443)
T ss_pred EcchhhcccCCC---CCCCCCccchhcccccccccceeeecceeEECCceeEEecCCcCCCChhhccHHHhC--ccceEE
Confidence 999999976532 1233344667788999998742 24578888776 346777888865 999999
Q ss_pred EecCCCHHHHHHHHHH----HHhc-------CCCCC--CCCCCHHHHHHhCC-------CCCHHHHHHHHHHHHHHHH--
Q 007575 499 MVETPDKIGREAILKV----HVSK-------KELPL--AKDIDLGDIASMTT-------GFTGADLANLVNEAALLAG-- 556 (597)
Q Consensus 499 ~v~~Pd~~eR~eILk~----~l~~-------~~~~l--~~dvdl~~LA~~t~-------G~SgaDL~~Lv~eAal~A~-- 556 (597)
.+..++.++...||.. .+++ .++.+ .++ .++.||+... +.-.+-|..++.....-+.
T Consensus 331 ~L~~L~~~dL~~ILteP~nsLikQy~~Lf~~egv~L~Ftd~-Al~~IA~~A~~~N~~~~~iGAR~LrtI~E~~L~d~~Fe 409 (443)
T PRK05201 331 ELDALTEEDFVRILTEPKASLIKQYQALLATEGVTLEFTDD-AIRRIAEIAYQVNEKTENIGARRLHTVMEKLLEDISFE 409 (443)
T ss_pred ECCCCCHHHHHHHhcCChhHHHHHHHHHHhhcCcEEEEcHH-HHHHHHHHHHHhcccccccchhhHHHHHHHHHHHHhcc
Confidence 9999999999888732 2221 22222 222 3666765542 2222455555555443332
Q ss_pred --hcC--CCcccHHHHHHHHHHHhccc
Q 007575 557 --RLN--KVVVEKIDFIHAVERSIAVS 579 (597)
Q Consensus 557 --r~~--~~~It~~d~~~Al~~v~~g~ 579 (597)
... ...|+.+.+...+..++...
T Consensus 410 ~p~~~~~~v~I~~~~V~~~l~~l~~~~ 436 (443)
T PRK05201 410 APDMSGETVTIDAAYVDEKLGDLVKDE 436 (443)
T ss_pred CCCCCCCEEEECHHHHHHHHHHHHhcC
Confidence 221 24577777777777766443
No 130
>PRK13407 bchI magnesium chelatase subunit I; Provisional
Probab=99.54 E-value=6.6e-14 Score=148.40 Aligned_cols=218 Identities=23% Similarity=0.339 Sum_probs=137.4
Q ss_pred CCcccccccCChHHHHHHHHHHHHhcChhHHhhcCCCCCCceEEeCCCCChHHHHHHHHHHhc-------CCCe--eeec
Q 007575 327 DTITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEA-------EVPF--ISCS 397 (597)
Q Consensus 327 ~~vtf~dV~G~de~k~~L~eiv~~l~~p~~~~~lg~~~p~gVLL~GPPGTGKT~LArAIA~el-------~~pf--i~is 397 (597)
....|++|+|++++++.|.-..-. + ...++||+|+||||||++|+++++-+ ++|+ ..+.
T Consensus 3 ~~~~f~~i~Gq~~~~~~l~~~~~~---~---------~~~~vLl~G~pG~gKT~lar~la~llP~~~~~e~~~~~~~~~~ 70 (334)
T PRK13407 3 KPFPFSAIVGQEEMKQAMVLTAID---P---------GIGGVLVFGDRGTGKSTAVRALAALLPLIKAVEGCPVNSARPE 70 (334)
T ss_pred CCCCHHHhCCHHHHHHHHHHHHhc---c---------CCCcEEEEcCCCCCHHHHHHHHHHHCCCcchhcccccccCccc
Confidence 357799999999998877653210 1 12479999999999999999999987 3322 1111
Q ss_pred h-hhh---------------HHHHhhcchHHHH------------------HHHHHHHhcCCeEEEEcCcchhhhhcCCc
Q 007575 398 A-SEF---------------VELYVGMGASRVR------------------DLFARAKKEAPSIIFIDEIDAVAKSRDGR 443 (597)
Q Consensus 398 ~-sef---------------~~~~vG~~e~~vr------------------~lF~~A~~~aP~ILfIDEIDaL~~~r~~~ 443 (597)
+ .+. .....+.++..+- ..+..|. ..+||||||+.+..
T Consensus 71 ~~~~~~~~~~~~~~~~~~p~~~~p~~~t~~~l~G~~d~~~~l~~g~~~~~~G~l~~A~---~GiL~lDEInrl~~----- 142 (334)
T PRK13407 71 DCPEWAHVSSTTMIERPTPVVDLPLGVTEDRVVGALDIERALTRGEKAFEPGLLARAN---RGYLYIDEVNLLED----- 142 (334)
T ss_pred CCcccccccCCcccccCCccccCCCCCCcceeecchhhhhhhhcCCeeecCCceEEcC---CCeEEecChHhCCH-----
Confidence 1 000 0011111111110 1111111 23999999998753
Q ss_pred ccccchhHHHHHHHHHHHHhcCCC-----------CCCcEEEEEecCCCC-CCChhhhCCCCcceEEEecCCCH-HHHHH
Q 007575 444 FRIVSNDEREQTLNQLLTEMDGFD-----------SNSAVIVLGATNRSD-VLDPALRRPGRFDRVVMVETPDK-IGREA 510 (597)
Q Consensus 444 ~~~~~~~e~eqtLnqLL~emdg~~-----------~~~~VIVIaaTNrpd-~LD~aLlRpgRFd~~I~v~~Pd~-~eR~e 510 (597)
.+++.|+..|+.-. ....+++|+++|..+ .++++|+. ||...+.++.|.. ++|.+
T Consensus 143 ----------~~q~~Lle~mee~~v~v~r~G~~~~~p~rfiviAt~NP~e~~l~~aLld--RF~~~v~v~~~~~~~e~~~ 210 (334)
T PRK13407 143 ----------HIVDLLLDVAQSGENVVEREGLSIRHPARFVLVGSGNPEEGELRPQLLD--RFGLSVEVRSPRDVETRVE 210 (334)
T ss_pred ----------HHHHHHHHHHHcCCeEEEECCeEEecCCCEEEEecCCcccCCCCHHHHh--hcceEEEcCCCCcHHHHHH
Confidence 34466777775322 245789999999754 68999999 9999999998866 89999
Q ss_pred HHHHHHhcCC-----------------------------CCCCCCC--CHHHHHHhCCC-CCHHHHHHHHHHHHHHHHhc
Q 007575 511 ILKVHVSKKE-----------------------------LPLAKDI--DLGDIASMTTG-FTGADLANLVNEAALLAGRL 558 (597)
Q Consensus 511 ILk~~l~~~~-----------------------------~~l~~dv--dl~~LA~~t~G-~SgaDL~~Lv~eAal~A~r~ 558 (597)
|++....... +.+.+++ -+..++..+.- -.-+++. +++.|...|+..
T Consensus 211 il~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~a~~~~~~V~v~~~~~~yi~~l~~~~~~~s~Ra~i~-l~~aA~a~A~l~ 289 (334)
T PRK13407 211 VIRRRDAYDADHDAFMAKWGAEDMQLRGRILGARARLPQLKTPNTVLHDCAALCIALGSDGLRGELT-LLRAARALAAFE 289 (334)
T ss_pred HHHHhhcccccchhhhccccccccCCHHHHHHHHHhcCCcccCHHHHHHHHHHHHHHCCCCchHHHH-HHHHHHHHHHHc
Confidence 9987543210 0011100 01222233321 1235555 999999999999
Q ss_pred CCCcccHHHHHHHHHHHhc
Q 007575 559 NKVVVEKIDFIHAVERSIA 577 (597)
Q Consensus 559 ~~~~It~~d~~~Al~~v~~ 577 (597)
+++.|+.+|+..+..-++.
T Consensus 290 Gr~~V~~~Di~~~~~~vl~ 308 (334)
T PRK13407 290 GAEAVGRSHLRSVATMALS 308 (334)
T ss_pred CCCeeCHHHHHHHHHHhhh
Confidence 9999999999888766654
No 131
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=99.53 E-value=2.9e-13 Score=139.01 Aligned_cols=184 Identities=24% Similarity=0.248 Sum_probs=120.1
Q ss_pred CceEEeCCCCChHHHHHHHHHHhcCCCeeeechh------hhHHHHhhcchHHHH---------------------HHHH
Q 007575 366 RGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSAS------EFVELYVGMGASRVR---------------------DLFA 418 (597)
Q Consensus 366 ~gVLL~GPPGTGKT~LArAIA~el~~pfi~is~s------ef~~~~vG~~e~~vr---------------------~lF~ 418 (597)
.++||+||||||||++|+++|..+|.||+.++|. +++..+.+.....+. .++.
T Consensus 22 ~~vLL~G~~GtGKT~lA~~la~~lg~~~~~i~~~~~~~~~dllg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~ 101 (262)
T TIGR02640 22 YPVHLRGPAGTGKTTLAMHVARKRDRPVMLINGDAELTTSDLVGSYAGYTRKKVHDQFIHNVVKLEDIVRQNWVDNRLTL 101 (262)
T ss_pred CeEEEEcCCCCCHHHHHHHHHHHhCCCEEEEeCCccCCHHHHhhhhcccchhhHHHHHHHHhhhhhcccceeecCchHHH
Confidence 4699999999999999999999999999988765 333333322111111 1122
Q ss_pred HHHhcCCeEEEEcCcchhhhhcCCcccccchhHHHHHHHHHHHHhcCCC--------------CCCcEEEEEecCCC---
Q 007575 419 RAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFD--------------SNSAVIVLGATNRS--- 481 (597)
Q Consensus 419 ~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~eqtLnqLL~emdg~~--------------~~~~VIVIaaTNrp--- 481 (597)
.++ ...+|+|||||.+... +.+.|+..|+... .+.++.||+|+|..
T Consensus 102 A~~--~g~~lllDEi~r~~~~---------------~q~~Ll~~Le~~~~~i~~~~~~~~~i~~~~~frvIaTsN~~~~~ 164 (262)
T TIGR02640 102 AVR--EGFTLVYDEFTRSKPE---------------TNNVLLSVFEEGVLELPGKRGTSRYVDVHPEFRVIFTSNPVEYA 164 (262)
T ss_pred HHH--cCCEEEEcchhhCCHH---------------HHHHHHHHhcCCeEEccCCCCCCceEecCCCCEEEEeeCCcccc
Confidence 222 2359999999986432 3455666554321 12367799999976
Q ss_pred --CCCChhhhCCCCcceEEEecCCCHHHHHHHHHHHHhcCCCCCCCCCCHHHHHH---h---C---CCCCHHHHHHHHHH
Q 007575 482 --DVLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIAS---M---T---TGFTGADLANLVNE 550 (597)
Q Consensus 482 --d~LD~aLlRpgRFd~~I~v~~Pd~~eR~eILk~~l~~~~~~l~~dvdl~~LA~---~---t---~G~SgaDL~~Lv~e 550 (597)
..++++|++ || ..+.++.|+.++-.+|++.+.. +.+. ..+.+.. . . ...+ .+.++.-
T Consensus 165 g~~~l~~aL~~--R~-~~i~i~~P~~~~e~~Il~~~~~-----~~~~-~~~~iv~~~~~~R~~~~~~~~~---~r~~i~~ 232 (262)
T TIGR02640 165 GVHETQDALLD--RL-ITIFMDYPDIDTETAILRAKTD-----VAED-SAATIVRLVREFRASGDEITSG---LRASLMI 232 (262)
T ss_pred ceecccHHHHh--hc-EEEECCCCCHHHHHHHHHHhhC-----CCHH-HHHHHHHHHHHHHhhCCccCCc---HHHHHHH
Confidence 356899999 88 5899999999999999998752 2222 1222221 1 1 1223 4444444
Q ss_pred HHHHHHhcCCCcccHHHHHHHHHHHhcc
Q 007575 551 AALLAGRLNKVVVEKIDFIHAVERSIAV 578 (597)
Q Consensus 551 Aal~A~r~~~~~It~~d~~~Al~~v~~g 578 (597)
|...+.......++.+||.+....++..
T Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 260 (262)
T TIGR02640 233 AEVATQQDIPVDVDDEDFVDLCIDILAS 260 (262)
T ss_pred HHHHHHcCCCCCCCcHHHHHHHHHHhcc
Confidence 4444444567889999999999888754
No 132
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=99.53 E-value=2.8e-13 Score=145.41 Aligned_cols=241 Identities=21% Similarity=0.262 Sum_probs=163.4
Q ss_pred cccccccCChHHHHHHHHHHHHhcChhHHhhcCCCCCCceEEeCCCCChHHHHHHHHHHhcCCC-----eeeechhhhHH
Q 007575 329 ITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVP-----FISCSASEFVE 403 (597)
Q Consensus 329 vtf~dV~G~de~k~~L~eiv~~l~~p~~~~~lg~~~p~gVLL~GPPGTGKT~LArAIA~el~~p-----fi~is~sef~~ 403 (597)
..-+.+.+.++..+.|..++...-+ ...|.++++|||||||||.+++.+++++.-+ ++++||....+
T Consensus 14 ~iP~~l~~Re~ei~~l~~~l~~~~~--------~~~p~n~~iyG~~GTGKT~~~~~v~~~l~~~~~~~~~~yINc~~~~t 85 (366)
T COG1474 14 YIPEELPHREEEINQLASFLAPALR--------GERPSNIIIYGPTGTGKTATVKFVMEELEESSANVEVVYINCLELRT 85 (366)
T ss_pred CCcccccccHHHHHHHHHHHHHHhc--------CCCCccEEEECCCCCCHhHHHHHHHHHHHhhhccCceEEEeeeeCCC
Confidence 3344589999998888887654222 3346679999999999999999999987433 89999876544
Q ss_pred HH---------------hhcchHH-HHHHHHHHHh-cCCeEEEEcCcchhhhhcCCcccccchhHHHHHHHHHHHHhcCC
Q 007575 404 LY---------------VGMGASR-VRDLFARAKK-EAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGF 466 (597)
Q Consensus 404 ~~---------------vG~~e~~-vr~lF~~A~~-~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~eqtLnqLL~emdg~ 466 (597)
.+ .|..... ...+++.... ...-||++||+|.|....+ .++..|+...+..
T Consensus 86 ~~~i~~~i~~~~~~~p~~g~~~~~~~~~l~~~~~~~~~~~IvvLDEid~L~~~~~------------~~LY~L~r~~~~~ 153 (366)
T COG1474 86 PYQVLSKILNKLGKVPLTGDSSLEILKRLYDNLSKKGKTVIVILDEVDALVDKDG------------EVLYSLLRAPGEN 153 (366)
T ss_pred HHHHHHHHHHHcCCCCCCCCchHHHHHHHHHHHHhcCCeEEEEEcchhhhccccc------------hHHHHHHhhcccc
Confidence 32 1122222 2222222222 3456999999999986542 4667777666544
Q ss_pred CCCCcEEEEEecCCC---CCCChhhhCCCCc-ceEEEecCCCHHHHHHHHHHHHhcC--CCCCCCCCCHHHHHHhCCCC-
Q 007575 467 DSNSAVIVLGATNRS---DVLDPALRRPGRF-DRVVMVETPDKIGREAILKVHVSKK--ELPLAKDIDLGDIASMTTGF- 539 (597)
Q Consensus 467 ~~~~~VIVIaaTNrp---d~LD~aLlRpgRF-d~~I~v~~Pd~~eR~eILk~~l~~~--~~~l~~dvdl~~LA~~t~G~- 539 (597)
..+|.+|+.+|.. +.+|+.+.+ +| ...|.|++++.+|..+|++...... ...+.+++ ++.+|......
T Consensus 154 --~~~v~vi~i~n~~~~~~~ld~rv~s--~l~~~~I~F~pY~a~el~~Il~~R~~~~~~~~~~~~~v-l~lia~~~a~~~ 228 (366)
T COG1474 154 --KVKVSIIAVSNDDKFLDYLDPRVKS--SLGPSEIVFPPYTAEELYDILRERVEEGFSAGVIDDDV-LKLIAALVAAES 228 (366)
T ss_pred --ceeEEEEEEeccHHHHHHhhhhhhh--ccCcceeeeCCCCHHHHHHHHHHHHHhhccCCCcCccH-HHHHHHHHHHcC
Confidence 6778999999886 578899987 44 3458999999999999999988742 12223332 44455333222
Q ss_pred -CHHHHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHhcccc-ccccccchhhhhhc
Q 007575 540 -TGADLANLVNEAALLAGRLNKVVVEKIDFIHAVERSIAVSL-SLSLSLSLQASISL 594 (597)
Q Consensus 540 -SgaDL~~Lv~eAal~A~r~~~~~It~~d~~~Al~~v~~g~~-k~s~~ls~q~~l~l 594 (597)
..+-...+|+.|+..|.+++...++.+++..|.+..-.... +.-..++.++.+++
T Consensus 229 GDAR~aidilr~A~eiAe~~~~~~v~~~~v~~a~~~~~~~~~~~~~~~L~~~~ki~L 285 (366)
T COG1474 229 GDARKAIDILRRAGEIAEREGSRKVSEDHVREAQEEIERDVLEEVLKTLPLHQKIVL 285 (366)
T ss_pred ccHHHHHHHHHHHHHHHHhhCCCCcCHHHHHHHHHHhhHHHHHHHHHcCCHhHHHHH
Confidence 44666789999999999999999999999999555433322 11235565555554
No 133
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=99.52 E-value=4.4e-13 Score=135.33 Aligned_cols=194 Identities=24% Similarity=0.344 Sum_probs=140.0
Q ss_pred CCCcccccccCChHHHHHHHHHHHHhcChhHHhhcCCCCCCceEEeCCCCChHHHHHHHHHHhc---CCCeeeechhhhH
Q 007575 326 GDTITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEA---EVPFISCSASEFV 402 (597)
Q Consensus 326 ~~~vtf~dV~G~de~k~~L~eiv~~l~~p~~~~~lg~~~p~gVLL~GPPGTGKT~LArAIA~el---~~pfi~is~sef~ 402 (597)
...+.+++++|.++.|+.|.+-...+-. ..+..++||+|++|||||+++||+..++ |+.++.+...++.
T Consensus 21 ~~~~~l~~L~Gie~Qk~~l~~Nt~~Fl~--------G~pannvLL~G~rGtGKSSlVkall~~y~~~GLRlIev~k~~L~ 92 (249)
T PF05673_consen 21 PDPIRLDDLIGIERQKEALIENTEQFLQ--------GLPANNVLLWGARGTGKSSLVKALLNEYADQGLRLIEVSKEDLG 92 (249)
T ss_pred CCCCCHHHhcCHHHHHHHHHHHHHHHHc--------CCCCcceEEecCCCCCHHHHHHHHHHHHhhcCceEEEECHHHhc
Confidence 4578999999999999999887764332 3467899999999999999999999876 7888888877663
Q ss_pred HHHhhcchHHHHHHHHHHHh-cCCeEEEEcCcchhhhhcCCcccccchhHHHHHHHHHHHHhcCC--CCCCcEEEEEecC
Q 007575 403 ELYVGMGASRVRDLFARAKK-EAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGF--DSNSAVIVLGATN 479 (597)
Q Consensus 403 ~~~vG~~e~~vr~lF~~A~~-~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~eqtLnqLL~emdg~--~~~~~VIVIaaTN 479 (597)
.+.++++..+. ..+-|||+|++- -. +.+.....|...|||- ..+.+|+|.||+|
T Consensus 93 ---------~l~~l~~~l~~~~~kFIlf~DDLs---Fe-----------~~d~~yk~LKs~LeGgle~~P~NvliyATSN 149 (249)
T PF05673_consen 93 ---------DLPELLDLLRDRPYKFILFCDDLS---FE-----------EGDTEYKALKSVLEGGLEARPDNVLIYATSN 149 (249)
T ss_pred ---------cHHHHHHHHhcCCCCEEEEecCCC---CC-----------CCcHHHHHHHHHhcCccccCCCcEEEEEecc
Confidence 34556666553 345699999863 11 1123446777778764 3367899999999
Q ss_pred CCCCCCh---------------------hhhCCCCcceEEEecCCCHHHHHHHHHHHHhcCCCCCCCC-CC--HHHHHHh
Q 007575 480 RSDVLDP---------------------ALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKD-ID--LGDIASM 535 (597)
Q Consensus 480 rpd~LD~---------------------aLlRpgRFd~~I~v~~Pd~~eR~eILk~~l~~~~~~l~~d-vd--l~~LA~~ 535 (597)
+-+.+.+ .+--..||...+.|.+|+.++..+|++.++.+.++.+.++ +. ....|..
T Consensus 150 RRHLv~E~~~d~~~~~~~eih~~d~~eEklSLsDRFGL~l~F~~~~q~~YL~IV~~~~~~~g~~~~~e~l~~~Al~wa~~ 229 (249)
T PF05673_consen 150 RRHLVPESFSDREDIQDDEIHPSDTIEEKLSLSDRFGLWLSFYPPDQEEYLAIVRHYAERYGLELDEEELRQEALQWALR 229 (249)
T ss_pred hhhccchhhhhccCCCccccCcchHHHHHHhHHHhCCcEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHH
Confidence 8543321 1211249999999999999999999999998887776642 11 1223345
Q ss_pred CCCCCHHHHHHHHHH
Q 007575 536 TTGFTGADLANLVNE 550 (597)
Q Consensus 536 t~G~SgaDL~~Lv~e 550 (597)
..|.||+-..+.++.
T Consensus 230 rg~RSGRtA~QF~~~ 244 (249)
T PF05673_consen 230 RGGRSGRTARQFIDD 244 (249)
T ss_pred cCCCCHHHHHHHHHH
Confidence 567888877777664
No 134
>TIGR00382 clpX endopeptidase Clp ATP-binding regulatory subunit (clpX). A member of the ATP-dependent proteases, ClpX has ATP-dependent chaperone activity and is required for specific ATP-dependent proteolytic activities expressed by ClpPX. The gene is also found to be involved in stress tolerance in Bacillus subtilis and is essential for the efficient acquisition of genes specifying type IA and IB restriction.
Probab=99.52 E-value=1.8e-13 Score=148.55 Aligned_cols=220 Identities=28% Similarity=0.353 Sum_probs=139.0
Q ss_pred cccCChHHHHHHHHHHHH----hcCh-hHHhhcCC-CCCCceEEeCCCCChHHHHHHHHHHhcCCCeeeechhhhHH-HH
Q 007575 333 DVAGVDEAKEELEEIVEF----LRSP-DKYIRLGA-RPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFVE-LY 405 (597)
Q Consensus 333 dV~G~de~k~~L~eiv~~----l~~p-~~~~~lg~-~~p~gVLL~GPPGTGKT~LArAIA~el~~pfi~is~sef~~-~~ 405 (597)
.|+|++++++.|...+.. +... ..-...+. ....++||+||||||||++|+++|..++.||..++++.+.. .|
T Consensus 78 ~ViGQe~A~~~l~~av~~h~~~~~~~~~~~~~~~~~~~~~~iLL~GP~GsGKT~lAraLA~~l~~pf~~~da~~L~~~gy 157 (413)
T TIGR00382 78 YVIGQEQAKKVLSVAVYNHYKRLNFEKNKKSDNGVELSKSNILLIGPTGSGKTLLAQTLARILNVPFAIADATTLTEAGY 157 (413)
T ss_pred eecCHHHHHHHHHHHHHHHHhhhccccccccccccccCCceEEEECCCCcCHHHHHHHHHHhcCCCeEEechhhcccccc
Confidence 479999999999887732 1110 00000001 12468999999999999999999999999999999887643 46
Q ss_pred hhcc-hHHHHHHHHHH----HhcCCeEEEEcCcchhhhhcCCcccccchhHHHHHHHHHHHHhcCCCC-----------C
Q 007575 406 VGMG-ASRVRDLFARA----KKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDS-----------N 469 (597)
Q Consensus 406 vG~~-e~~vr~lF~~A----~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~eqtLnqLL~emdg~~~-----------~ 469 (597)
+|.. +..+..++..+ ....++||||||||.+.+++.+.. ...+-..+.+.+.||..|+|... .
T Consensus 158 vG~d~e~~L~~~~~~~~~~l~~a~~gIV~lDEIdkl~~~~~~~s-~~~dvsg~~vq~~LL~iLeG~~~~v~~~~gr~~~~ 236 (413)
T TIGR00382 158 VGEDVENILLKLLQAADYDVEKAQKGIIYIDEIDKISRKSENPS-ITRDVSGEGVQQALLKIIEGTVANVPPQGGRKHPY 236 (413)
T ss_pred ccccHHHHHHHHHHhCcccHHhcccceEEecccchhchhhcccc-ccccccchhHHHHHHHHhhccceecccCCCccccC
Confidence 6764 33344444422 234577999999999987543211 11111123566777877765421 2
Q ss_pred CcEEEEEecCCC---------------------------C-----------------------CCChhhhCCCCcceEEE
Q 007575 470 SAVIVLGATNRS---------------------------D-----------------------VLDPALRRPGRFDRVVM 499 (597)
Q Consensus 470 ~~VIVIaaTNrp---------------------------d-----------------------~LD~aLlRpgRFd~~I~ 499 (597)
.+.++|.|+|-. + -+.|+++ ||+|.++.
T Consensus 237 ~~~i~i~TsNilfi~~Gaf~g~~~i~~~r~~~~~~gf~~~~~~~~~~~~~~~~~~~~~dl~~~g~~PEfl--gRld~Iv~ 314 (413)
T TIGR00382 237 QEFIQIDTSNILFICGGAFVGLEKIIKKRTGKSSIGFGAEVKKKSKEKADLLRQVEPEDLVKFGLIPEFI--GRLPVIAT 314 (413)
T ss_pred CCeEEEEcCCceeeecccccChHHHHHHHhhhccccccccccccchhhHHHHHHHHHHHHHHHhhHHHHh--CCCCeEee
Confidence 356788887761 0 0234554 49999999
Q ss_pred ecCCCHHHHHHHHHHH----Hhc-------CCCCC--CCCCCHHHHHHhC--CCCCHHHHHHHHHHHHHHHH
Q 007575 500 VETPDKIGREAILKVH----VSK-------KELPL--AKDIDLGDIASMT--TGFTGADLANLVNEAALLAG 556 (597)
Q Consensus 500 v~~Pd~~eR~eILk~~----l~~-------~~~~l--~~dvdl~~LA~~t--~G~SgaDL~~Lv~eAal~A~ 556 (597)
+.+.+.++..+|+... +++ .++.+ .++ -++.|++.. ..+-.+.|+.++++...-+.
T Consensus 315 f~pL~~~~L~~Il~~~~n~l~kq~~~~l~~~gi~L~~t~~-a~~~Ia~~~~~~~~GAR~Lr~iie~~l~~~m 385 (413)
T TIGR00382 315 LEKLDEEALIAILTKPKNALVKQYQALFKMDNVELDFEEE-ALKAIAKKALERKTGARGLRSIVEGLLLDVM 385 (413)
T ss_pred cCCCCHHHHHHHHHHHHHHHHHHHHHHhccCCeEEEECHH-HHHHHHHhCCCCCCCchHHHHHHHHhhHHHH
Confidence 9999999999998763 221 12222 122 267777653 34445778888777655443
No 135
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=99.52 E-value=5.1e-13 Score=152.30 Aligned_cols=216 Identities=25% Similarity=0.339 Sum_probs=138.6
Q ss_pred CCcccccccCChHHHHHHHHHHHHhcChhHHhhcCCCCCCceEEeCCCCChHHHHHHHHHHhc----------CCCeeee
Q 007575 327 DTITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEA----------EVPFISC 396 (597)
Q Consensus 327 ~~vtf~dV~G~de~k~~L~eiv~~l~~p~~~~~lg~~~p~gVLL~GPPGTGKT~LArAIA~el----------~~pfi~i 396 (597)
.+.+|++++|++.+...+...+. . ..+..++|+||||||||++|+++++.. +.+|+.+
T Consensus 149 rp~~~~~iiGqs~~~~~l~~~ia---~---------~~~~~vlL~Gp~GtGKTTLAr~i~~~~~~~~~~~~~~~~~fv~i 216 (615)
T TIGR02903 149 RPRAFSEIVGQERAIKALLAKVA---S---------PFPQHIILYGPPGVGKTTAARLALEEAKKLKHTPFAEDAPFVEV 216 (615)
T ss_pred CcCcHHhceeCcHHHHHHHHHHh---c---------CCCCeEEEECCCCCCHHHHHHHHHHhhhhccCCcccCCCCeEEE
Confidence 46789999999998887654432 1 234579999999999999999998654 4689999
Q ss_pred chhhhH-------HHHhhcchHH----HHHHHHH----------HHhcCCeEEEEcCcchhhhhcCCcccccchhHHHHH
Q 007575 397 SASEFV-------ELYVGMGASR----VRDLFAR----------AKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQT 455 (597)
Q Consensus 397 s~sef~-------~~~vG~~e~~----vr~lF~~----------A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~eqt 455 (597)
+|..+. ..+.|..... .+..+.. .......+|||||++.|....+
T Consensus 217 ~~~~l~~d~~~i~~~llg~~~~~~~~~a~~~l~~~gl~~~~~g~v~~asgGvL~LDEi~~Ld~~~Q-------------- 282 (615)
T TIGR02903 217 DGTTLRWDPREVTNPLLGSVHDPIYQGARRDLAETGVPEPKTGLVTDAHGGVLFIDEIGELDPLLQ-------------- 282 (615)
T ss_pred echhccCCHHHHhHHhcCCccHHHHHHHHHHHHHcCCCchhcCchhhcCCCeEEEeccccCCHHHH--------------
Confidence 987541 1112211110 0111110 0011234999999998854321
Q ss_pred HHHHHHHhcCC--------------------------CCCCcEEEEEec-CCCCCCChhhhCCCCcceEEEecCCCHHHH
Q 007575 456 LNQLLTEMDGF--------------------------DSNSAVIVLGAT-NRSDVLDPALRRPGRFDRVVMVETPDKIGR 508 (597)
Q Consensus 456 LnqLL~emdg~--------------------------~~~~~VIVIaaT-Nrpd~LD~aLlRpgRFd~~I~v~~Pd~~eR 508 (597)
+.|+..|+.- .....+++|++| +.++.++++|++ ||. .+.+++++.++.
T Consensus 283 -~~Ll~~Le~~~v~~~~~~~~~~~~~~~~~ik~~~~~~~~~~~VLI~aTt~~~~~l~~aLrS--R~~-~i~~~pls~edi 358 (615)
T TIGR02903 283 -NKLLKVLEDKRVEFSSSYYDPDDPNVPKYIKKLFEEGAPADFVLIGATTRDPEEINPALRS--RCA-EVFFEPLTPEDI 358 (615)
T ss_pred -HHHHHHHhhCeEEeecceeccCCcccchhhhhhcccCccceEEEEEeccccccccCHHHHh--cee-EEEeCCCCHHHH
Confidence 3333333211 112346666554 567889999988 886 678899999999
Q ss_pred HHHHHHHHhcCCCCCCCCCCHHHHHHhCCCCCHHHHHHHHHHHHHHHHh--------cCCCcccHHHHHHHHHHH
Q 007575 509 EAILKVHVSKKELPLAKDIDLGDIASMTTGFTGADLANLVNEAALLAGR--------LNKVVVEKIDFIHAVERS 575 (597)
Q Consensus 509 ~eILk~~l~~~~~~l~~dvdl~~LA~~t~G~SgaDL~~Lv~eAal~A~r--------~~~~~It~~d~~~Al~~v 575 (597)
.+|++.++.+.+..+.++ .++.|+..+. .++...+++..+...+.. .....|+.+|+++++..-
T Consensus 359 ~~Il~~~a~~~~v~ls~e-al~~L~~ys~--~gRraln~L~~~~~~~~~~~~~~~~~~~~~~I~~edv~~~l~~~ 430 (615)
T TIGR02903 359 ALIVLNAAEKINVHLAAG-VEELIARYTI--EGRKAVNILADVYGYALYRAAEAGKENDKVTITQDDVYEVIQIS 430 (615)
T ss_pred HHHHHHHHHHcCCCCCHH-HHHHHHHCCC--cHHHHHHHHHHHHHHHHHHHHHhccCCCCeeECHHHHHHHhCCC
Confidence 999999988765555544 3677777664 456666666665444321 123479999999887653
No 136
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=99.51 E-value=4.1e-13 Score=155.70 Aligned_cols=165 Identities=22% Similarity=0.332 Sum_probs=117.9
Q ss_pred cccCChHHHHHHHHHHHHhcChhHHhhcCCCCCCceEEeCCCCChHHHHHHHHHHhcCCCeeeechhhhHH-----HHhh
Q 007575 333 DVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFVE-----LYVG 407 (597)
Q Consensus 333 dV~G~de~k~~L~eiv~~l~~p~~~~~lg~~~p~gVLL~GPPGTGKT~LArAIA~el~~pfi~is~sef~~-----~~vG 407 (597)
.|+|++++++.|.+.+...+..-. . ..+|...+||+||||||||.+|+++|..++.+|+.++|+++.+ .+.|
T Consensus 459 ~ViGQ~~ai~~l~~~i~~~~~gl~--~-~~kp~~~~Lf~GP~GvGKT~lAk~LA~~l~~~~i~id~se~~~~~~~~~LiG 535 (758)
T PRK11034 459 LVFGQDKAIEALTEAIKMSRAGLG--H-EHKPVGSFLFAGPTGVGKTEVTVQLSKALGIELLRFDMSEYMERHTVSRLIG 535 (758)
T ss_pred eEeCcHHHHHHHHHHHHHHhcccc--C-CCCCcceEEEECCCCCCHHHHHHHHHHHhCCCcEEeechhhcccccHHHHcC
Confidence 489999999999998875432100 0 0123346999999999999999999999999999999998743 3333
Q ss_pred cchH-----HHHHHHHHHHhcCCeEEEEcCcchhhhhcCCcccccchhHHHHHHHHHHHHhcCCC---------CCCcEE
Q 007575 408 MGAS-----RVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFD---------SNSAVI 473 (597)
Q Consensus 408 ~~e~-----~vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~eqtLnqLL~emdg~~---------~~~~VI 473 (597)
.... .-..+.+..+....|||||||||.+.+ .+.+.|+..||.-. .-.+++
T Consensus 536 ~~~gyvg~~~~g~L~~~v~~~p~sVlllDEieka~~---------------~v~~~LLq~ld~G~ltd~~g~~vd~rn~i 600 (758)
T PRK11034 536 APPGYVGFDQGGLLTDAVIKHPHAVLLLDEIEKAHP---------------DVFNLLLQVMDNGTLTDNNGRKADFRNVV 600 (758)
T ss_pred CCCCcccccccchHHHHHHhCCCcEEEeccHhhhhH---------------HHHHHHHHHHhcCeeecCCCceecCCCcE
Confidence 2211 111233334455568999999999853 25577777776321 124688
Q ss_pred EEEecCCC-------------------------CCCChhhhCCCCcceEEEecCCCHHHHHHHHHHHHh
Q 007575 474 VLGATNRS-------------------------DVLDPALRRPGRFDRVVMVETPDKIGREAILKVHVS 517 (597)
Q Consensus 474 VIaaTNrp-------------------------d~LD~aLlRpgRFd~~I~v~~Pd~~eR~eILk~~l~ 517 (597)
+|+|||.- ..+.|+++. |+|.+|.|++.+.++..+|+...+.
T Consensus 601 iI~TsN~g~~~~~~~~~g~~~~~~~~~~~~~~~~~f~pefl~--Rid~ii~f~~L~~~~l~~I~~~~l~ 667 (758)
T PRK11034 601 LVMTTNAGVRETERKSIGLIHQDNSTDAMEEIKKIFTPEFRN--RLDNIIWFDHLSTDVIHQVVDKFIV 667 (758)
T ss_pred EEEeCCcCHHHHhhcccCcccchhhHHHHHHHHHhcCHHHHc--cCCEEEEcCCCCHHHHHHHHHHHHH
Confidence 99999832 125677877 9999999999999999999887765
No 137
>CHL00081 chlI Mg-protoporyphyrin IX chelatase
Probab=99.51 E-value=3.1e-13 Score=143.87 Aligned_cols=226 Identities=22% Similarity=0.264 Sum_probs=145.4
Q ss_pred CCCcccccccCChHHHHHHHHHHHHhcChhHHhhcCCCCCCceEEeCCCCChHHHHHHHHHHhc-------CCCeeeec-
Q 007575 326 GDTITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEA-------EVPFISCS- 397 (597)
Q Consensus 326 ~~~vtf~dV~G~de~k~~L~eiv~~l~~p~~~~~lg~~~p~gVLL~GPPGTGKT~LArAIA~el-------~~pfi~is- 397 (597)
.+...|++|+|++++|..|...+. +| ...||||.||+|||||++|+++++.+ +.||....
T Consensus 11 ~~~~pf~~ivGq~~~k~al~~~~~---~p---------~~~~vli~G~~GtGKs~~ar~~~~~l~~~~~~~~~pf~~~p~ 78 (350)
T CHL00081 11 RPVFPFTAIVGQEEMKLALILNVI---DP---------KIGGVMIMGDRGTGKSTTIRALVDLLPEIEVVKDDPFNSHPS 78 (350)
T ss_pred CCCCCHHHHhChHHHHHHHHHhcc---CC---------CCCeEEEEcCCCCCHHHHHHHHHHHHhhcCccCCCCCCCCCC
Confidence 346789999999999888776543 22 23589999999999999999997765 23454110
Q ss_pred -----hhhhHHH-------------------HhhcchHHH------HHHHHHHH---------hcCCeEEEEcCcchhhh
Q 007575 398 -----ASEFVEL-------------------YVGMGASRV------RDLFARAK---------KEAPSIIFIDEIDAVAK 438 (597)
Q Consensus 398 -----~sef~~~-------------------~vG~~e~~v------r~lF~~A~---------~~aP~ILfIDEIDaL~~ 438 (597)
+++.... -.|.++.++ ...|.... .....+||||||+.+..
T Consensus 79 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~ted~l~G~iD~~~al~~g~~~~~~GlL~~A~~GiL~lDEInrL~~ 158 (350)
T CHL00081 79 DPELMSDEVREAIQNGETIETEKIKIPMVDLPLGATEDRVCGTIDIEKALTEGVKAFEPGLLAKANRGILYVDEVNLLDD 158 (350)
T ss_pred ChhhhchhhhhhhcccccccceeccccceecCCCCchhhccCcccHHHHhhcCcccccCCeeeecCCCEEEecChHhCCH
Confidence 0111110 012222221 11111110 11124999999999864
Q ss_pred hcCCcccccchhHHHHHHHHHHHHhcCC-----------CCCCcEEEEEecCCCC-CCChhhhCCCCcceEEEecCCC-H
Q 007575 439 SRDGRFRIVSNDEREQTLNQLLTEMDGF-----------DSNSAVIVLGATNRSD-VLDPALRRPGRFDRVVMVETPD-K 505 (597)
Q Consensus 439 ~r~~~~~~~~~~e~eqtLnqLL~emdg~-----------~~~~~VIVIaaTNrpd-~LD~aLlRpgRFd~~I~v~~Pd-~ 505 (597)
. +.+.|+..|+.- ..+.++++|++.|..+ .+.++|+. ||..++.+..|+ .
T Consensus 159 ~---------------~Q~~LLeam~e~~~~ier~G~s~~~p~rfiviaT~np~eg~l~~~Lld--Rf~l~i~l~~~~~~ 221 (350)
T CHL00081 159 H---------------LVDILLDSAASGWNTVEREGISIRHPARFVLVGSGNPEEGELRPQLLD--RFGMHAEIRTVKDP 221 (350)
T ss_pred H---------------HHHHHHHHHHhCCeEEeeCCeeeecCCCEEEEeccCcccCCCCHHHHH--HhCceeecCCCCCh
Confidence 4 334566666431 1235788888888665 69999999 999999999997 5
Q ss_pred HHHHHHHHHHHhcCC-----------------------------CCCCCCC--CHHHHHHhCCCCCHHHHHHHHHHHHHH
Q 007575 506 IGREAILKVHVSKKE-----------------------------LPLAKDI--DLGDIASMTTGFTGADLANLVNEAALL 554 (597)
Q Consensus 506 ~eR~eILk~~l~~~~-----------------------------~~l~~dv--dl~~LA~~t~G~SgaDL~~Lv~eAal~ 554 (597)
+.+.+|++....... +.+.+.+ -+..++..+.--+++--..+++-|..+
T Consensus 222 ~~e~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~ar~~~~~V~v~~~~~~yi~~l~~~~~~~s~Ra~i~l~raArA~ 301 (350)
T CHL00081 222 ELRVKIVEQRTSFDKNPQEFREKYEESQEELRSKIVAAQNLLPKVEIDYDLRVKISQICSELDVDGLRGDIVTNRAAKAL 301 (350)
T ss_pred HHHHHHHHhhhccccChhhhhhhhccccccCHHHHHHHHHhcCCCccCHHHHHHHHHHHHHHCCCCChHHHHHHHHHHHH
Confidence 899999987542110 1111110 022333333334566677788889999
Q ss_pred HHhcCCCcccHHHHHHHHHHHhcccc
Q 007575 555 AGRLNKVVVEKIDFIHAVERSIAVSL 580 (597)
Q Consensus 555 A~r~~~~~It~~d~~~Al~~v~~g~~ 580 (597)
|+.+++..|+.+|+..+..-+++--.
T Consensus 302 Aal~GR~~V~pdDv~~~a~~vL~HR~ 327 (350)
T CHL00081 302 AAFEGRTEVTPKDIFKVITLCLRHRL 327 (350)
T ss_pred HHHcCCCCCCHHHHHHHHHHHHHHhC
Confidence 99999999999999999988876544
No 138
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
Probab=99.49 E-value=4.6e-13 Score=148.12 Aligned_cols=196 Identities=22% Similarity=0.326 Sum_probs=153.9
Q ss_pred CCcccccccCChHHHHHHHHHHHHhcChhHHhhcCCCCCCceEEeCCCCChHHHHHHHHHHhcCCC-------eeee-ch
Q 007575 327 DTITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVP-------FISC-SA 398 (597)
Q Consensus 327 ~~vtf~dV~G~de~k~~L~eiv~~l~~p~~~~~lg~~~p~gVLL~GPPGTGKT~LArAIA~el~~p-------fi~i-s~ 398 (597)
.+-+|+|++|++.+...|...+..- +...+.||+||.|||||++||.+|..+++. +-.| .|
T Consensus 11 RP~~F~evvGQe~v~~~L~nal~~~-----------ri~hAYlfsG~RGvGKTt~Ari~AkalNC~~~~~~ePC~~C~~C 79 (515)
T COG2812 11 RPKTFDDVVGQEHVVKTLSNALENG-----------RIAHAYLFSGPRGVGKTTIARILAKALNCENGPTAEPCGKCISC 79 (515)
T ss_pred CcccHHHhcccHHHHHHHHHHHHhC-----------cchhhhhhcCCCCcCchhHHHHHHHHhcCCCCCCCCcchhhhhh
Confidence 4578999999999999999998853 344568999999999999999999988653 2211 11
Q ss_pred h--------hhHHH--HhhcchHHHHHHHHHHHh----cCCeEEEEcCcchhhhhcCCcccccchhHHHHHHHHHHHHhc
Q 007575 399 S--------EFVEL--YVGMGASRVRDLFARAKK----EAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMD 464 (597)
Q Consensus 399 s--------ef~~~--~vG~~e~~vr~lF~~A~~----~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~eqtLnqLL~emd 464 (597)
- ++++. -...+-+.+|++.+.+.. ....|.+|||+|.|. .+..|.||..++
T Consensus 80 k~I~~g~~~DviEiDaASn~gVddiR~i~e~v~y~P~~~ryKVyiIDEvHMLS---------------~~afNALLKTLE 144 (515)
T COG2812 80 KEINEGSLIDVIEIDAASNTGVDDIREIIEKVNYAPSEGRYKVYIIDEVHMLS---------------KQAFNALLKTLE 144 (515)
T ss_pred HhhhcCCcccchhhhhhhccChHHHHHHHHHhccCCccccceEEEEecHHhhh---------------HHHHHHHhcccc
Confidence 1 12211 112245667888877753 335699999999885 346699999998
Q ss_pred CCCCCCcEEEEEecCCCCCCChhhhCCCCcceEEEecCCCHHHHHHHHHHHHhcCCCCCCCCCCHHHHHHhCCCCCHHHH
Q 007575 465 GFDSNSAVIVLGATNRSDVLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTTGFTGADL 544 (597)
Q Consensus 465 g~~~~~~VIVIaaTNrpd~LD~aLlRpgRFd~~I~v~~Pd~~eR~eILk~~l~~~~~~l~~dvdl~~LA~~t~G~SgaDL 544 (597)
+++..|++|.||..++.+++.+++ |+. ++.+...+.++....|+..+.++++...++ .+..+|+...| +.+|.
T Consensus 145 --EPP~hV~FIlATTe~~Kip~TIlS--Rcq-~f~fkri~~~~I~~~L~~i~~~E~I~~e~~-aL~~ia~~a~G-s~RDa 217 (515)
T COG2812 145 --EPPSHVKFILATTEPQKIPNTILS--RCQ-RFDFKRLDLEEIAKHLAAILDKEGINIEED-ALSLIARAAEG-SLRDA 217 (515)
T ss_pred --cCccCeEEEEecCCcCcCchhhhh--ccc-cccccCCCHHHHHHHHHHHHHhcCCccCHH-HHHHHHHHcCC-ChhhH
Confidence 567789999999999999999998 764 678899999999999999999888887766 48889998887 78999
Q ss_pred HHHHHHHHHHH
Q 007575 545 ANLVNEAALLA 555 (597)
Q Consensus 545 ~~Lv~eAal~A 555 (597)
..+++.|....
T Consensus 218 lslLDq~i~~~ 228 (515)
T COG2812 218 LSLLDQAIAFG 228 (515)
T ss_pred HHHHHHHHHcc
Confidence 99999988665
No 139
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.49 E-value=1.5e-12 Score=148.34 Aligned_cols=208 Identities=19% Similarity=0.241 Sum_probs=144.9
Q ss_pred CCcccccccCChHHHHHHHHHHHHhcChhHHhhcCCCCCCceEEeCCCCChHHHHHHHHHHhcCCCeee---------ec
Q 007575 327 DTITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFIS---------CS 397 (597)
Q Consensus 327 ~~vtf~dV~G~de~k~~L~eiv~~l~~p~~~~~lg~~~p~gVLL~GPPGTGKT~LArAIA~el~~pfi~---------is 397 (597)
.+.+|+||+|++++++.|...+.. .+.+..+|||||+|+|||++|+++|..+.+.... -+
T Consensus 12 RP~~f~~viGq~~~~~~L~~~i~~-----------~~l~hayLf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~Cg~C~s 80 (614)
T PRK14971 12 RPSTFESVVGQEALTTTLKNAIAT-----------NKLAHAYLFCGPRGVGKTTCARIFAKTINCQNLTADGEACNECES 80 (614)
T ss_pred CCCCHHHhcCcHHHHHHHHHHHHc-----------CCCCeeEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCCCcchH
Confidence 457899999999999998888762 3456779999999999999999999987642110 01
Q ss_pred hhhhHHH-------Hhh---cchHHHHHHHHHHHhc----CCeEEEEcCcchhhhhcCCcccccchhHHHHHHHHHHHHh
Q 007575 398 ASEFVEL-------YVG---MGASRVRDLFARAKKE----APSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEM 463 (597)
Q Consensus 398 ~sef~~~-------~vG---~~e~~vr~lF~~A~~~----aP~ILfIDEIDaL~~~r~~~~~~~~~~e~eqtLnqLL~em 463 (597)
|..+... +.+ .+...++++.+.+... ...|++|||+|.+.. ...+.|+..|
T Consensus 81 C~~~~~~~~~n~~~ld~~~~~~vd~Ir~li~~~~~~P~~~~~KVvIIdea~~Ls~---------------~a~naLLK~L 145 (614)
T PRK14971 81 CVAFNEQRSYNIHELDAASNNSVDDIRNLIEQVRIPPQIGKYKIYIIDEVHMLSQ---------------AAFNAFLKTL 145 (614)
T ss_pred HHHHhcCCCCceEEecccccCCHHHHHHHHHHHhhCcccCCcEEEEEECcccCCH---------------HHHHHHHHHH
Confidence 1111110 001 1234577777666432 235999999998842 3457899999
Q ss_pred cCCCCCCcEEEEEecCCCCCCChhhhCCCCcceEEEecCCCHHHHHHHHHHHHhcCCCCCCCCCCHHHHHHhCCCCCHHH
Q 007575 464 DGFDSNSAVIVLGATNRSDVLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTTGFTGAD 543 (597)
Q Consensus 464 dg~~~~~~VIVIaaTNrpd~LD~aLlRpgRFd~~I~v~~Pd~~eR~eILk~~l~~~~~~l~~dvdl~~LA~~t~G~SgaD 543 (597)
+... ...++|.+|+.+..|-+.|++ |+. .+.|.+++.++....++..+.+.++.+.++ .++.|+..+.| +.++
T Consensus 146 Eepp--~~tifIL~tt~~~kIl~tI~S--Rc~-iv~f~~ls~~ei~~~L~~ia~~egi~i~~~-al~~La~~s~g-dlr~ 218 (614)
T PRK14971 146 EEPP--SYAIFILATTEKHKILPTILS--RCQ-IFDFNRIQVADIVNHLQYVASKEGITAEPE-ALNVIAQKADG-GMRD 218 (614)
T ss_pred hCCC--CCeEEEEEeCCchhchHHHHh--hhh-eeecCCCCHHHHHHHHHHHHHHcCCCCCHH-HHHHHHHHcCC-CHHH
Confidence 8533 445666667677888899988 764 799999999999999998888777766554 47888888854 6777
Q ss_pred HHHHHHHHHHHHHhcCCCcccHHHHHHH
Q 007575 544 LANLVNEAALLAGRLNKVVVEKIDFIHA 571 (597)
Q Consensus 544 L~~Lv~eAal~A~r~~~~~It~~d~~~A 571 (597)
+.++++..+.++ +.. |+.+++.+.
T Consensus 219 al~~Lekl~~y~---~~~-It~~~V~~~ 242 (614)
T PRK14971 219 ALSIFDQVVSFT---GGN-ITYKSVIEN 242 (614)
T ss_pred HHHHHHHHHHhc---cCC-ccHHHHHHH
Confidence 777777665554 222 666555443
No 140
>PRK09087 hypothetical protein; Validated
Probab=99.48 E-value=4.7e-13 Score=134.81 Aligned_cols=203 Identities=16% Similarity=0.183 Sum_probs=134.4
Q ss_pred CCCcccccccCChHHHHHHHHHHHHhcChhHHhhcCCCCCCceEEeCCCCChHHHHHHHHHHhcCCCeeeechhhhHHHH
Q 007575 326 GDTITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFVELY 405 (597)
Q Consensus 326 ~~~vtf~dV~G~de~k~~L~eiv~~l~~p~~~~~lg~~~p~gVLL~GPPGTGKT~LArAIA~el~~pfi~is~sef~~~~ 405 (597)
.+..+|++++..+.-...+. ++..... ...+.++|+||+|+|||+|+++++...++.++. ..++...+
T Consensus 15 ~~~~~~~~Fi~~~~N~~a~~-~l~~~~~---------~~~~~l~l~G~~GsGKThLl~~~~~~~~~~~i~--~~~~~~~~ 82 (226)
T PRK09087 15 DPAYGRDDLLVTESNRAAVS-LVDHWPN---------WPSPVVVLAGPVGSGKTHLASIWREKSDALLIH--PNEIGSDA 82 (226)
T ss_pred CCCCChhceeecCchHHHHH-HHHhccc---------CCCCeEEEECCCCCCHHHHHHHHHHhcCCEEec--HHHcchHH
Confidence 35678999885443222222 2222111 112349999999999999999999987666443 33332222
Q ss_pred hhcchHHHHHHHHHHHhcCCeEEEEcCcchhhhhcCCcccccchhHHHHHHHHHHHHhcCCCCCCcEEEEEecCCCCC--
Q 007575 406 VGMGASRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATNRSDV-- 483 (597)
Q Consensus 406 vG~~e~~vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~eqtLnqLL~emdg~~~~~~VIVIaaTNrpd~-- 483 (597)
+..... .+|+|||+|.+.. ..+ .|+..++........+||+++..|..
T Consensus 83 -----------~~~~~~---~~l~iDDi~~~~~---------~~~-------~lf~l~n~~~~~g~~ilits~~~p~~~~ 132 (226)
T PRK09087 83 -----------ANAAAE---GPVLIEDIDAGGF---------DET-------GLFHLINSVRQAGTSLLMTSRLWPSSWN 132 (226)
T ss_pred -----------HHhhhc---CeEEEECCCCCCC---------CHH-------HHHHHHHHHHhCCCeEEEECCCChHHhc
Confidence 111112 3799999997631 111 23333332233345677777766643
Q ss_pred -CChhhhCCCCcc--eEEEecCCCHHHHHHHHHHHHhcCCCCCCCCCCHHHHHHhCCCCCHHHHHHHHHHHHHHHHhcCC
Q 007575 484 -LDPALRRPGRFD--RVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTTGFTGADLANLVNEAALLAGRLNK 560 (597)
Q Consensus 484 -LD~aLlRpgRFd--~~I~v~~Pd~~eR~eILk~~l~~~~~~l~~dvdl~~LA~~t~G~SgaDL~~Lv~eAal~A~r~~~ 560 (597)
..++|++ ||. .++.+..|+.++|.++++.++...++.+.+++ ++.|+++..+ +.+.+..+++.....+...+
T Consensus 133 ~~~~dL~S--Rl~~gl~~~l~~pd~e~~~~iL~~~~~~~~~~l~~ev-~~~La~~~~r-~~~~l~~~l~~L~~~~~~~~- 207 (226)
T PRK09087 133 VKLPDLKS--RLKAATVVEIGEPDDALLSQVIFKLFADRQLYVDPHV-VYYLVSRMER-SLFAAQTIVDRLDRLALERK- 207 (226)
T ss_pred cccccHHH--HHhCCceeecCCCCHHHHHHHHHHHHHHcCCCCCHHH-HHHHHHHhhh-hHHHHHHHHHHHHHHHHHhC-
Confidence 3678888 774 68999999999999999999998888887775 8899998874 67777777777766665544
Q ss_pred CcccHHHHHHHHHHH
Q 007575 561 VVVEKIDFIHAVERS 575 (597)
Q Consensus 561 ~~It~~d~~~Al~~v 575 (597)
..||...++++++.+
T Consensus 208 ~~it~~~~~~~l~~~ 222 (226)
T PRK09087 208 SRITRALAAEVLNEM 222 (226)
T ss_pred CCCCHHHHHHHHHhh
Confidence 458999999988765
No 141
>TIGR02030 BchI-ChlI magnesium chelatase ATPase subunit I. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria.
Probab=99.48 E-value=7.3e-13 Score=140.71 Aligned_cols=218 Identities=23% Similarity=0.270 Sum_probs=141.0
Q ss_pred ccccccCChHHHHHHHHHHHHhcChhHHhhcCCCCCCceEEeCCCCChHHHHHHHHHHhc-------CCCee--------
Q 007575 330 TFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEA-------EVPFI-------- 394 (597)
Q Consensus 330 tf~dV~G~de~k~~L~eiv~~l~~p~~~~~lg~~~p~gVLL~GPPGTGKT~LArAIA~el-------~~pfi-------- 394 (597)
-|..|+|++++|..|.-.+- +| ...++||.|+||+|||+|++++++-+ ++|+-
T Consensus 2 pf~~ivgq~~~~~al~~~~~---~~---------~~g~vli~G~~G~gKttl~r~~~~~~~~~~~~~~~~~~~~~~~~~~ 69 (337)
T TIGR02030 2 PFTAIVGQDEMKLALLLNVI---DP---------KIGGVMVMGDRGTGKSTAVRALAALLPEIKAVAGCPFNSSPSDPEM 69 (337)
T ss_pred CccccccHHHHHHHHHHHhc---CC---------CCCeEEEEcCCCCCHHHHHHHHHHhhcccccccCCCCCCCCCCccc
Confidence 47889999999877644332 11 23479999999999999999999866 33332
Q ss_pred -eechhhh----------------HHHHhhcchHHHH------------------HHHHHHHhcCCeEEEEcCcchhhhh
Q 007575 395 -SCSASEF----------------VELYVGMGASRVR------------------DLFARAKKEAPSIIFIDEIDAVAKS 439 (597)
Q Consensus 395 -~is~sef----------------~~~~vG~~e~~vr------------------~lF~~A~~~aP~ILfIDEIDaL~~~ 439 (597)
..+|... .++-.|.++..+- .++.+|. ..+||||||+.+...
T Consensus 70 ~~~~~r~~~~~~~~~~~~~~~~~~~~lP~~~t~d~l~G~~d~~~~l~~g~~~~~~GlL~~A~---~GvL~lDEi~~L~~~ 146 (337)
T TIGR02030 70 MCEEVRIRVDSQEPLSIIKKPVPVVDLPLGATEDRVCGTLDIERALTEGVKAFEPGLLARAN---RGILYIDEVNLLEDH 146 (337)
T ss_pred cChHHhhhhhcccccccccCCCCcCCCCCCCcccceecchhHhhHhhcCCEEeecCcceecc---CCEEEecChHhCCHH
Confidence 1111110 1111111222211 1222222 249999999988533
Q ss_pred cCCcccccchhHHHHHHHHHHHHhcCCC-----------CCCcEEEEEecCCCC-CCChhhhCCCCcceEEEecCCCH-H
Q 007575 440 RDGRFRIVSNDEREQTLNQLLTEMDGFD-----------SNSAVIVLGATNRSD-VLDPALRRPGRFDRVVMVETPDK-I 506 (597)
Q Consensus 440 r~~~~~~~~~~e~eqtLnqLL~emdg~~-----------~~~~VIVIaaTNrpd-~LD~aLlRpgRFd~~I~v~~Pd~-~ 506 (597)
+.+.|+..|+.-. .+..+++|++.|..+ .+.++|+. ||..++.++.|+. +
T Consensus 147 ---------------~Q~~Ll~~l~~g~~~v~r~G~~~~~~~r~iviat~np~eg~l~~~Lld--Rf~l~i~l~~p~~~e 209 (337)
T TIGR02030 147 ---------------LVDVLLDVAASGWNVVEREGISIRHPARFVLVGSGNPEEGELRPQLLD--RFGLHAEIRTVRDVE 209 (337)
T ss_pred ---------------HHHHHHHHHHhCCeEEEECCEEEEcCCCEEEEeccccccCCCCHHHHh--hcceEEECCCCCCHH
Confidence 3456666664311 135688888888654 68999999 9999999999875 8
Q ss_pred HHHHHHHHHHhcC-----------------------------CCCCCCCC--CHHHHHHhCCCCCHHHHHHHHHHHHHHH
Q 007575 507 GREAILKVHVSKK-----------------------------ELPLAKDI--DLGDIASMTTGFTGADLANLVNEAALLA 555 (597)
Q Consensus 507 eR~eILk~~l~~~-----------------------------~~~l~~dv--dl~~LA~~t~G~SgaDL~~Lv~eAal~A 555 (597)
+|.+|++...... .+.+.+.+ -+..++..+..-+.+.-..+++-|...|
T Consensus 210 er~eIL~~~~~~~~~~~~~~~~~~~e~~~~~~~I~~a~~~~~~V~v~d~~~~~i~~l~~~~~~~s~Ra~i~l~raArA~A 289 (337)
T TIGR02030 210 LRVEIVERRTEYDADPHAFCEKWQTEQEALQAKIVNAQNLLPQVTIPYDVLVKVAELCAELDVDGLRGELTLNRAAKALA 289 (337)
T ss_pred HHHHHHHhhhhcccCchhhhhhhhhhhhcCHHHHHHHHHHhccCcCCHHHHHHHHHHHHHHCCCCCcHHHHHHHHHHHHH
Confidence 8899998743210 01111111 0233334444335677778889999999
Q ss_pred HhcCCCcccHHHHHHHHHHHhccc
Q 007575 556 GRLNKVVVEKIDFIHAVERSIAVS 579 (597)
Q Consensus 556 ~r~~~~~It~~d~~~Al~~v~~g~ 579 (597)
..+++..|+.+|+..+..-++.--
T Consensus 290 al~GR~~V~~dDv~~~a~~vL~HR 313 (337)
T TIGR02030 290 AFEGRTEVTVDDIRRVAVLALRHR 313 (337)
T ss_pred HHcCCCCCCHHHHHHHHHHHHHHh
Confidence 999999999999999988887544
No 142
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=99.47 E-value=1.2e-12 Score=135.82 Aligned_cols=223 Identities=20% Similarity=0.254 Sum_probs=148.9
Q ss_pred cccccccCChHHHHHHHHHHHHhcChhHHhhcCCCCCCceEEeCCCCChHHHHHHHHHHhc---------CCCeeeechh
Q 007575 329 ITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEA---------EVPFISCSAS 399 (597)
Q Consensus 329 vtf~dV~G~de~k~~L~eiv~~l~~p~~~~~lg~~~p~gVLL~GPPGTGKT~LArAIA~el---------~~pfi~is~s 399 (597)
+.=+..+|++.+++.|..+.+.+..|.+ ..+.++||+|++|.|||++++.++... .+|++.+.++
T Consensus 31 i~~~rWIgY~~A~~~L~~L~~Ll~~P~~------~Rmp~lLivG~snnGKT~Ii~rF~~~hp~~~d~~~~~~PVv~vq~P 104 (302)
T PF05621_consen 31 IRADRWIGYPRAKEALDRLEELLEYPKR------HRMPNLLIVGDSNNGKTMIIERFRRLHPPQSDEDAERIPVVYVQMP 104 (302)
T ss_pred HhcCCeecCHHHHHHHHHHHHHHhCCcc------cCCCceEEecCCCCcHHHHHHHHHHHCCCCCCCCCccccEEEEecC
Confidence 3345689999999999999998888754 445679999999999999999998754 2577777543
Q ss_pred ------hhHHHH---hh------c-chHHHHHHHHHHHhcCCeEEEEcCcchhhhhcCCcccccchhHHHHHHHHHHHHh
Q 007575 400 ------EFVELY---VG------M-GASRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEM 463 (597)
Q Consensus 400 ------ef~~~~---vG------~-~e~~vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~eqtLnqLL~em 463 (597)
.|.... .| . ..+.-..+....+...+.+|+|||++.+.. |.....+.++|.|....
T Consensus 105 ~~p~~~~~Y~~IL~~lgaP~~~~~~~~~~~~~~~~llr~~~vrmLIIDE~H~lLa--------Gs~~~qr~~Ln~LK~L~ 176 (302)
T PF05621_consen 105 PEPDERRFYSAILEALGAPYRPRDRVAKLEQQVLRLLRRLGVRMLIIDEFHNLLA--------GSYRKQREFLNALKFLG 176 (302)
T ss_pred CCCChHHHHHHHHHHhCcccCCCCCHHHHHHHHHHHHHHcCCcEEEeechHHHhc--------ccHHHHHHHHHHHHHHh
Confidence 221110 01 1 112223344556667788999999999863 33445566777666554
Q ss_pred cCCCCCCcEEEEEecCCCCC--CChhhhCCCCcceEEEecCC-CHHHHHHHHHHHHhcCCCCCCCCCCH----HHHHHhC
Q 007575 464 DGFDSNSAVIVLGATNRSDV--LDPALRRPGRFDRVVMVETP-DKIGREAILKVHVSKKELPLAKDIDL----GDIASMT 536 (597)
Q Consensus 464 dg~~~~~~VIVIaaTNrpd~--LD~aLlRpgRFd~~I~v~~P-d~~eR~eILk~~l~~~~~~l~~dvdl----~~LA~~t 536 (597)
+.+. -.+|.+++..--.. -|+.+.+ ||+ .+.++.. ..++...++..+-....+.-..++.. ..|-..+
T Consensus 177 NeL~--ipiV~vGt~~A~~al~~D~QLa~--RF~-~~~Lp~W~~d~ef~~LL~s~e~~LPLr~~S~l~~~~la~~i~~~s 251 (302)
T PF05621_consen 177 NELQ--IPIVGVGTREAYRALRTDPQLAS--RFE-PFELPRWELDEEFRRLLASFERALPLRKPSNLASPELARRIHERS 251 (302)
T ss_pred hccC--CCeEEeccHHHHHHhccCHHHHh--ccC-CccCCCCCCCcHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHc
Confidence 4322 33455554332232 3788988 997 4555543 33566777777665433333333333 4455677
Q ss_pred CCCCHHHHHHHHHHHHHHHHhcCCCcccHHHHHHH
Q 007575 537 TGFTGADLANLVNEAALLAGRLNKVVVEKIDFIHA 571 (597)
Q Consensus 537 ~G~SgaDL~~Lv~eAal~A~r~~~~~It~~d~~~A 571 (597)
.|..| ++..+++.||..|++.+.+.||.+.++.+
T Consensus 252 ~G~iG-~l~~ll~~aA~~AI~sG~E~It~~~l~~~ 285 (302)
T PF05621_consen 252 EGLIG-ELSRLLNAAAIAAIRSGEERITREILDKI 285 (302)
T ss_pred CCchH-HHHHHHHHHHHHHHhcCCceecHHHHhhC
Confidence 77655 89999999999999999999999998763
No 143
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=99.47 E-value=8.5e-13 Score=153.49 Aligned_cols=198 Identities=25% Similarity=0.329 Sum_probs=132.4
Q ss_pred cccCChHHHHHHHHHHHHhcChhHHhhcCCCCCC-ceEEeCCCCChHHHHHHHHHHhcCCCeeeechhhhHHH-----Hh
Q 007575 333 DVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPR-GVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFVEL-----YV 406 (597)
Q Consensus 333 dV~G~de~k~~L~eiv~~l~~p~~~~~lg~~~p~-gVLL~GPPGTGKT~LArAIA~el~~pfi~is~sef~~~-----~v 406 (597)
.|+|++++++.+.+.+...+..-. ....|. .+||+||||||||++|+++|..++.+++.++++++.+. ..
T Consensus 455 ~v~GQ~~ai~~l~~~i~~~~~g~~----~~~~p~~~~lf~Gp~GvGKT~lA~~la~~l~~~~~~~d~se~~~~~~~~~li 530 (731)
T TIGR02639 455 KIFGQDEAIDSLVSSIKRSRAGLG----NPNKPVGSFLFTGPTGVGKTELAKQLAEALGVHLERFDMSEYMEKHTVSRLI 530 (731)
T ss_pred ceeCcHHHHHHHHHHHHHHhcCCC----CCCCCceeEEEECCCCccHHHHHHHHHHHhcCCeEEEeCchhhhcccHHHHh
Confidence 578999998888887765321100 011244 48999999999999999999999999999999987652 22
Q ss_pred hcc-----hHHHHHHHHHHHhcCCeEEEEcCcchhhhhcCCcccccchhHHHHHHHHHHHHhcCCC---------CCCcE
Q 007575 407 GMG-----ASRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFD---------SNSAV 472 (597)
Q Consensus 407 G~~-----e~~vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~eqtLnqLL~emdg~~---------~~~~V 472 (597)
|.. ......+.+..+....+||+|||||.+.+ .+.+.|+..||... +-.++
T Consensus 531 g~~~gyvg~~~~~~l~~~~~~~p~~VvllDEieka~~---------------~~~~~Ll~~ld~g~~~d~~g~~vd~~~~ 595 (731)
T TIGR02639 531 GAPPGYVGFEQGGLLTEAVRKHPHCVLLLDEIEKAHP---------------DIYNILLQVMDYATLTDNNGRKADFRNV 595 (731)
T ss_pred cCCCCCcccchhhHHHHHHHhCCCeEEEEechhhcCH---------------HHHHHHHHhhccCeeecCCCcccCCCCC
Confidence 221 11223344555566678999999998743 35577787777431 12457
Q ss_pred EEEEecCCCC-------------------------CCChhhhCCCCcceEEEecCCCHHHHHHHHHHHHhcC-------C
Q 007575 473 IVLGATNRSD-------------------------VLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKK-------E 520 (597)
Q Consensus 473 IVIaaTNrpd-------------------------~LD~aLlRpgRFd~~I~v~~Pd~~eR~eILk~~l~~~-------~ 520 (597)
++|+|||... .+.|+++. |+|.+|.|.+.+.++..+|++..+.+. +
T Consensus 596 iii~Tsn~g~~~~~~~~~~f~~~~~~~~~~~~~~~~f~pef~~--Rid~Vi~F~pLs~e~l~~Iv~~~L~~l~~~l~~~~ 673 (731)
T TIGR02639 596 ILIMTSNAGASEMSKPPIGFGSENVESKSDKAIKKLFSPEFRN--RLDAIIHFNPLSEEVLEKIVQKFVDELSKQLNEKN 673 (731)
T ss_pred EEEECCCcchhhhhhccCCcchhhhHHHHHHHHHhhcChHHHh--cCCeEEEcCCCCHHHHHHHHHHHHHHHHHHHHhCC
Confidence 8889988731 24667776 999999999999999999998887631 1
Q ss_pred C--CCCCCCCHHHHHHh--CCCCCHHHHHHHHHHHH
Q 007575 521 L--PLAKDIDLGDIASM--TTGFTGADLANLVNEAA 552 (597)
Q Consensus 521 ~--~l~~dvdl~~LA~~--t~G~SgaDL~~Lv~eAa 552 (597)
+ .+.++ .++.|+.. ...+-.+.|+.+++.-.
T Consensus 674 ~~l~i~~~-a~~~La~~~~~~~~GaR~l~r~i~~~~ 708 (731)
T TIGR02639 674 IKLELTDD-AKKYLAEKGYDEEFGARPLARVIQEEI 708 (731)
T ss_pred CeEEeCHH-HHHHHHHhCCCcccCchHHHHHHHHHh
Confidence 1 12222 24555553 23344466666666543
No 144
>TIGR02442 Cob-chelat-sub cobaltochelatase subunit. A number of genomes (actinobacteria, cyanobacteria, betaproteobacteria and pseudomonads) which apparently biosynthesize B12, encode a cobN gene but are demonstrably lacking cobS and cobT. These genomes do, however contain a homolog (modelled here) of the magnesium chelatase subunits BchI/BchD family. Aside from the cyanobacteria (which have a separate magnesium chelatase trimer), these species do not make chlorins, so do not have any use for a magnesium chelatase. Furthermore, in nearly all cases the members of this family are proximal to either CobN itself or other genes involved in cobalt transport or B12 biosynthesis.
Probab=99.44 E-value=1.5e-12 Score=149.08 Aligned_cols=218 Identities=22% Similarity=0.275 Sum_probs=143.2
Q ss_pred ccccccCChHHHHHHHHHHHHhcChhHHhhcCCCCCCceEEeCCCCChHHHHHHHHHHhc--------------------
Q 007575 330 TFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEA-------------------- 389 (597)
Q Consensus 330 tf~dV~G~de~k~~L~eiv~~l~~p~~~~~lg~~~p~gVLL~GPPGTGKT~LArAIA~el-------------------- 389 (597)
-|.+|+|+++++..|.-... ++ ...+|||.|+||||||++|++++..+
T Consensus 2 pf~~ivGq~~~~~al~~~av---~~---------~~g~vli~G~~GtgKs~lar~l~~~lp~~~~~~~~~~~c~p~~~~~ 69 (633)
T TIGR02442 2 PFTAIVGQEDLKLALLLNAV---DP---------RIGGVLIRGEKGTAKSTAARGLAALLPPIDVVAGCPFSCDPDDPEE 69 (633)
T ss_pred CcchhcChHHHHHHHHHHhh---CC---------CCCeEEEEcCCCCcHHHHHHHHHHhCCCceeccCCcCCCCCCCccc
Confidence 37899999999877654432 21 12369999999999999999999877
Q ss_pred ---------------CCCeeeechhhhHHHHhhcc--hHHH--------HHHHHHHHhcCCeEEEEcCcchhhhhcCCcc
Q 007575 390 ---------------EVPFISCSASEFVELYVGMG--ASRV--------RDLFARAKKEAPSIIFIDEIDAVAKSRDGRF 444 (597)
Q Consensus 390 ---------------~~pfi~is~sef~~~~vG~~--e~~v--------r~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~ 444 (597)
..||+.+.++......+|.. ++.+ ..++.+|. ..|||||||+.+...
T Consensus 70 ~~~~~~~~~~~~~~~~~pfv~~p~~~t~~~l~G~~d~~~~l~~g~~~~~~G~L~~A~---~GiL~lDEi~~l~~~----- 141 (633)
T TIGR02442 70 WCEECRRKYRPSEQRPVPFVNLPLGATEDRVVGSLDIERALREGEKAFQPGLLAEAH---RGILYIDEVNLLDDH----- 141 (633)
T ss_pred cChhhhhcccccccCCCCeeeCCCCCcHHHcCCcccHHHHhhcCCeeecCcceeecC---CCeEEeChhhhCCHH-----
Confidence 35677666554333333321 0000 11222222 239999999998643
Q ss_pred cccchhHHHHHHHHHHHHhcCC-----------CCCCcEEEEEecCCC-CCCChhhhCCCCcceEEEecCCC-HHHHHHH
Q 007575 445 RIVSNDEREQTLNQLLTEMDGF-----------DSNSAVIVLGATNRS-DVLDPALRRPGRFDRVVMVETPD-KIGREAI 511 (597)
Q Consensus 445 ~~~~~~e~eqtLnqLL~emdg~-----------~~~~~VIVIaaTNrp-d~LD~aLlRpgRFd~~I~v~~Pd-~~eR~eI 511 (597)
+.+.|+..|+.- .....++||+++|.. ..|.++|+. ||+.+|.++.|. .+++.++
T Consensus 142 ----------~q~~Ll~~le~g~~~v~r~g~~~~~~~~~~lIat~np~eg~l~~~L~d--R~~l~i~v~~~~~~~~~~~i 209 (633)
T TIGR02442 142 ----------LVDVLLDAAAMGVNRVEREGLSVSHPARFVLIGTMNPEEGDLRPQLLD--RFGLCVDVAAPRDPEERVEI 209 (633)
T ss_pred ----------HHHHHHHHHhcCCEEEEECCceeeecCCeEEEEecCCCCCCCCHHHHh--hcceEEEccCCCchHHHHHH
Confidence 456777777532 113468999999864 368899999 999999988764 5777777
Q ss_pred HHHHHhcC-----------------------------CCCCCCCCCHHHHHHhC--CCC-CHHHHHHHHHHHHHHHHhcC
Q 007575 512 LKVHVSKK-----------------------------ELPLAKDIDLGDIASMT--TGF-TGADLANLVNEAALLAGRLN 559 (597)
Q Consensus 512 Lk~~l~~~-----------------------------~~~l~~dvdl~~LA~~t--~G~-SgaDL~~Lv~eAal~A~r~~ 559 (597)
++...... .+.+.++ .++.|+..+ .|. +.+....+++-|..+|..++
T Consensus 210 l~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~ar~~~~~V~is~~-~~~~l~~~~~~~~i~s~Ra~i~~~r~Ara~AaL~g 288 (633)
T TIGR02442 210 IRRRLAFDADPEAFAARWAAEQEELRNRIARARSLLPSVRISDS-LIRFISELCIEFGVDGHRADIVMARAARALAALDG 288 (633)
T ss_pred HHHHHhhccCcHHHHHHhhhhHHHHHHHHHHHHHhCCCCCCCHH-HHHHHHHHHHHhCCCCccHHHHHHHHHHHHHHHcC
Confidence 76533210 0111111 133333332 233 34556678888888999999
Q ss_pred CCcccHHHHHHHHHHHhcccc
Q 007575 560 KVVVEKIDFIHAVERSIAVSL 580 (597)
Q Consensus 560 ~~~It~~d~~~Al~~v~~g~~ 580 (597)
...|+.+|+.+|++-++..-.
T Consensus 289 r~~V~~~Dv~~A~~lvL~hR~ 309 (633)
T TIGR02442 289 RRRVTAEDVREAAELVLPHRR 309 (633)
T ss_pred CCcCCHHHHHHHHHHHhhhhc
Confidence 999999999999999986544
No 145
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=99.42 E-value=4e-12 Score=114.28 Aligned_cols=121 Identities=42% Similarity=0.634 Sum_probs=83.1
Q ss_pred CCCceEEeCCCCChHHHHHHHHHHhc---CCCeeeechhhhHHHHhhcchHH---HHHHHHHHHhcCCeEEEEcCcchhh
Q 007575 364 PPRGVLLVGLPGTGKTLLAKAVAGEA---EVPFISCSASEFVELYVGMGASR---VRDLFARAKKEAPSIIFIDEIDAVA 437 (597)
Q Consensus 364 ~p~gVLL~GPPGTGKT~LArAIA~el---~~pfi~is~sef~~~~vG~~e~~---vr~lF~~A~~~aP~ILfIDEIDaL~ 437 (597)
...+++|+||||||||+++++++.++ +.+++.+++.++........... ....+.......+++|+|||++.+.
T Consensus 18 ~~~~v~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lilDe~~~~~ 97 (151)
T cd00009 18 PPKNLLLYGPPGTGKTTLARAIANELFRPGAPFLYLNASDLLEGLVVAELFGHFLVRLLFELAEKAKPGVLFIDEIDSLS 97 (151)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHhhcCCCCeEEEehhhhhhhhHHHHHhhhhhHhHHHHhhccCCCeEEEEeChhhhh
Confidence 34579999999999999999999998 89999999887755433222111 1222334445668899999999873
Q ss_pred hhcCCcccccchhHHHHHHHHHHHHhcCCCC----CCcEEEEEecCCCC--CCChhhhCCCCcceEEEec
Q 007575 438 KSRDGRFRIVSNDEREQTLNQLLTEMDGFDS----NSAVIVLGATNRSD--VLDPALRRPGRFDRVVMVE 501 (597)
Q Consensus 438 ~~r~~~~~~~~~~e~eqtLnqLL~emdg~~~----~~~VIVIaaTNrpd--~LD~aLlRpgRFd~~I~v~ 501 (597)
.. ....++..+..+.. ..++.+|+++|... .+++.+.. ||+.++.++
T Consensus 98 ~~---------------~~~~~~~~i~~~~~~~~~~~~~~ii~~~~~~~~~~~~~~~~~--r~~~~i~~~ 150 (151)
T cd00009 98 RG---------------AQNALLRVLETLNDLRIDRENVRVIGATNRPLLGDLDRALYD--RLDIRIVIP 150 (151)
T ss_pred HH---------------HHHHHHHHHHhcCceeccCCCeEEEEecCccccCCcChhHHh--hhccEeecC
Confidence 21 11233333333322 46788888998876 67888877 998777664
No 146
>KOG1942 consensus DNA helicase, TBP-interacting protein [Replication, recombination and repair]
Probab=99.40 E-value=8.7e-12 Score=127.43 Aligned_cols=134 Identities=22% Similarity=0.279 Sum_probs=98.8
Q ss_pred CeEEEEcCcchhhhhcCCcccccchhHHHHHHHHHHHHhcCCCCCCcEEEEEecCC-------------CCCCChhhhCC
Q 007575 425 PSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATNR-------------SDVLDPALRRP 491 (597)
Q Consensus 425 P~ILfIDEIDaL~~~r~~~~~~~~~~e~eqtLnqLL~emdg~~~~~~VIVIaaTNr-------------pd~LD~aLlRp 491 (597)
|.||||||++-|-- ..+..|-..++ ++-.-+||.|||+ |.-+++.|+.
T Consensus 297 PGVLFIDEVhMLDi---------------EcFTyL~kalE---S~iaPivifAsNrG~~~irGt~d~~sPhGip~dllD- 357 (456)
T KOG1942|consen 297 PGVLFIDEVHMLDI---------------ECFTYLHKALE---SPIAPIVIFASNRGMCTIRGTEDILSPHGIPPDLLD- 357 (456)
T ss_pred CcceEeeehhhhhh---------------HHHHHHHHHhc---CCCCceEEEecCCcceeecCCcCCCCCCCCCHHHhh-
Confidence 66888888776631 11222222332 3334477778887 4556788877
Q ss_pred CCcceEEEecCCCHHHHHHHHHHHHhcCCCCCCCCCCHHHHHHhCCCCCHHHHHHHHHHHHHHHHhcCCCcccHHHHHHH
Q 007575 492 GRFDRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTTGFTGADLANLVNEAALLAGRLNKVVVEKIDFIHA 571 (597)
Q Consensus 492 gRFd~~I~v~~Pd~~eR~eILk~~l~~~~~~l~~dvdl~~LA~~t~G~SgaDL~~Lv~eAal~A~r~~~~~It~~d~~~A 571 (597)
|+ ..|..-+++.++.++|++......++.+.++ .++.++......|-+...+|+.-|.++|...++..|..+|++++
T Consensus 358 -Rl-~Iirt~~y~~~e~r~Ii~~Ra~~E~l~~~e~-a~~~l~~~gt~tsLRy~vqLl~p~~~~ak~~g~~~i~v~dvee~ 434 (456)
T KOG1942|consen 358 -RL-LIIRTLPYDEEEIRQIIKIRAQVEGLQVEEE-ALDLLAEIGTSTSLRYAVQLLTPASILAKTNGRKEISVEDVEEV 434 (456)
T ss_pred -he-eEEeeccCCHHHHHHHHHHHHhhhcceecHH-HHHHHHhhccchhHHHHHHhcCHHHHHHHHcCCceeecccHHHH
Confidence 66 3667778899999999999998888777655 48888887777788888899999999999999999999999999
Q ss_pred HHHHhcccc
Q 007575 572 VERSIAVSL 580 (597)
Q Consensus 572 l~~v~~g~~ 580 (597)
-+-++-...
T Consensus 435 ~~Lf~Dak~ 443 (456)
T KOG1942|consen 435 TELFLDAKR 443 (456)
T ss_pred HHHHHhchh
Confidence 877765443
No 147
>PF06068 TIP49: TIP49 C-terminus; InterPro: IPR010339 This family consists of the C-terminal region of several eukaryotic and archaeal RuvB-like 1 (Pontin or TIP49a) and RuvB-like 2 (Reptin or TIP49b) proteins. The N-terminal domain contains the AAA ATPase, central region IPR003959 from INTERPRO domain. In zebrafish, the liebeskummer (lik) mutation, causes development of hyperplastic embryonic hearts. lik encodes Reptin, a component of a DNA-stimulated ATPase complex. Beta-catenin and Pontin, a DNA-stimulated ATPase that is often part of complexes with Reptin, are in the same genetic pathways. The Reptin/Pontin ratio serves to regulate heart growth during development, at least in part via the beta-catenin pathway []. TBP-interacting protein 49 (TIP49) was originally identified as a TBP-binding protein, and two related proteins are encoded by individual genes, tip49a and b. Although the function of this gene family has not been elucidated, they are supposed to play a critical role in nuclear events because they interact with various kinds of nuclear factors and have DNA helicase activities. TIP49a has been suggested to act as an autoantigen in some patients with autoimmune diseases [].; GO: 0003678 DNA helicase activity, 0005524 ATP binding; PDB: 2XSZ_E 2CQA_A 2C9O_C.
Probab=99.37 E-value=9.8e-12 Score=131.65 Aligned_cols=69 Identities=38% Similarity=0.552 Sum_probs=53.9
Q ss_pred CcccccccCChHHHHHHHHHHHHhcChhHHhhcCCCCCCceEEeCCCCChHHHHHHHHHHhcC--CCeeeechhhhHH
Q 007575 328 TITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAE--VPFISCSASEFVE 403 (597)
Q Consensus 328 ~vtf~dV~G~de~k~~L~eiv~~l~~p~~~~~lg~~~p~gVLL~GPPGTGKT~LArAIA~el~--~pfi~is~sef~~ 403 (597)
....+.++|+.++++..--+++..+.. .-..+++||.||||||||.||-++|+++| +||..++++++.+
T Consensus 20 ~~~~~GlVGQ~~AReAagiiv~mIk~~-------K~aGr~iLiaGppGtGKTAlA~~ia~eLG~~~PF~~isgSEiyS 90 (398)
T PF06068_consen 20 RYIADGLVGQEKAREAAGIIVDMIKEG-------KIAGRAILIAGPPGTGKTALAMAIAKELGEDVPFVSISGSEIYS 90 (398)
T ss_dssp -SEETTEES-HHHHHHHHHHHHHHHTT---------TT-EEEEEE-TTSSHHHHHHHHHHHCTTTS-EEEEEGGGG-B
T ss_pred eeccccccChHHHHHHHHHHHHHHhcc-------cccCcEEEEeCCCCCCchHHHHHHHHHhCCCCCeeEcccceeee
Confidence 344568999999999999999987763 23567999999999999999999999996 8999999988754
No 148
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=99.36 E-value=1.6e-11 Score=144.64 Aligned_cols=195 Identities=26% Similarity=0.341 Sum_probs=129.9
Q ss_pred ccccCChHHHHHHHHHHHHhcChhHHhhcCCCCCCc-eEEeCCCCChHHHHHHHHHHhc---CCCeeeechhhhHHH---
Q 007575 332 ADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRG-VLLVGLPGTGKTLLAKAVAGEA---EVPFISCSASEFVEL--- 404 (597)
Q Consensus 332 ~dV~G~de~k~~L~eiv~~l~~p~~~~~lg~~~p~g-VLL~GPPGTGKT~LArAIA~el---~~pfi~is~sef~~~--- 404 (597)
..|+|++++.+.+.+.+...+..-. ....|.+ +||+||||||||.+|+++|..+ ...++.++++++.+.
T Consensus 566 ~~v~GQ~~Av~~v~~~i~~~~~gl~----~~~~p~~~~lf~Gp~GvGKT~lA~~La~~l~~~~~~~~~~dmse~~~~~~~ 641 (852)
T TIGR03345 566 ERVIGQDHALEAIAERIRTARAGLE----DPRKPLGVFLLVGPSGVGKTETALALAELLYGGEQNLITINMSEFQEAHTV 641 (852)
T ss_pred CeEcChHHHHHHHHHHHHHHhcCCC----CCCCCceEEEEECCCCCCHHHHHHHHHHHHhCCCcceEEEeHHHhhhhhhh
Confidence 3689999998888887765321100 0123554 7999999999999999999988 468899999988654
Q ss_pred ---------HhhcchHHHHHHHHHHHhcCCeEEEEcCcchhhhhcCCcccccchhHHHHHHHHHHHHhcCCC--------
Q 007575 405 ---------YVGMGASRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFD-------- 467 (597)
Q Consensus 405 ---------~vG~~e~~vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~eqtLnqLL~emdg~~-------- 467 (597)
|+|..+. ..+.+..+.+..+||+|||||...+ .+.+.|+..||.-.
T Consensus 642 ~~l~g~~~gyvg~~~~--g~L~~~v~~~p~svvllDEieka~~---------------~v~~~Llq~ld~g~l~d~~Gr~ 704 (852)
T TIGR03345 642 SRLKGSPPGYVGYGEG--GVLTEAVRRKPYSVVLLDEVEKAHP---------------DVLELFYQVFDKGVMEDGEGRE 704 (852)
T ss_pred ccccCCCCCccccccc--chHHHHHHhCCCcEEEEechhhcCH---------------HHHHHHHHHhhcceeecCCCcE
Confidence 3333221 1234445567779999999986542 34566777776321
Q ss_pred -CCCcEEEEEecCCCC-----------------------------CCChhhhCCCCcceEEEecCCCHHHHHHHHHHHHh
Q 007575 468 -SNSAVIVLGATNRSD-----------------------------VLDPALRRPGRFDRVVMVETPDKIGREAILKVHVS 517 (597)
Q Consensus 468 -~~~~VIVIaaTNrpd-----------------------------~LD~aLlRpgRFd~~I~v~~Pd~~eR~eILk~~l~ 517 (597)
+-.+.+||.|||... .+.|+++. |++ +|.|.+.+.++..+|+...+.
T Consensus 705 vd~~n~iiI~TSNlg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~PEfln--Ri~-iI~F~pLs~e~l~~Iv~~~L~ 781 (852)
T TIGR03345 705 IDFKNTVILLTSNAGSDLIMALCADPETAPDPEALLEALRPELLKVFKPAFLG--RMT-VIPYLPLDDDVLAAIVRLKLD 781 (852)
T ss_pred EeccccEEEEeCCCchHHHHHhccCcccCcchHHHHHHHHHHHHHhccHHHhc--cee-EEEeCCCCHHHHHHHHHHHHH
Confidence 114688889988521 14567777 897 899999999999999887765
Q ss_pred cC--------CCC--CCCCCCHHHHHHhCCC--CCHHHHHHHHHHH
Q 007575 518 KK--------ELP--LAKDIDLGDIASMTTG--FTGADLANLVNEA 551 (597)
Q Consensus 518 ~~--------~~~--l~~dvdl~~LA~~t~G--~SgaDL~~Lv~eA 551 (597)
+. ++. +.++ .++.|+....+ +-.+.|.++++.-
T Consensus 782 ~l~~rl~~~~gi~l~i~d~-a~~~La~~g~~~~~GAR~L~r~Ie~~ 826 (852)
T TIGR03345 782 RIARRLKENHGAELVYSEA-LVEHIVARCTEVESGARNIDAILNQT 826 (852)
T ss_pred HHHHHHHHhcCceEEECHH-HHHHHHHHcCCCCCChHHHHHHHHHH
Confidence 31 222 2222 25666666533 3456777776653
No 149
>COG3829 RocR Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains [Transcription / Signal transduction mechanisms]
Probab=99.35 E-value=6.7e-13 Score=145.43 Aligned_cols=214 Identities=24% Similarity=0.364 Sum_probs=140.5
Q ss_pred CCCcccccccCChHHHHHHHHHHHHhcChhHHhhcCCCCCCceEEeCCCCChHHHHHHHHHHhc---CCCeeeechhhhH
Q 007575 326 GDTITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEA---EVPFISCSASEFV 402 (597)
Q Consensus 326 ~~~vtf~dV~G~de~k~~L~eiv~~l~~p~~~~~lg~~~p~gVLL~GPPGTGKT~LArAIA~el---~~pfi~is~sef~ 402 (597)
....+|++++|..++..++.+.+... ++.+..|||.|.+||||.++|++|.+.. +-||+.+||..+.
T Consensus 239 ~a~y~f~~Iig~S~~m~~~~~~akr~----------A~tdstVLi~GESGTGKElfA~~IH~~S~R~~~PFIaiNCaAiP 308 (560)
T COG3829 239 KAKYTFDDIIGESPAMLRVLELAKRI----------AKTDSTVLILGESGTGKELFARAIHNLSPRANGPFIAINCAAIP 308 (560)
T ss_pred ccccchhhhccCCHHHHHHHHHHHhh----------cCCCCcEEEecCCCccHHHHHHHHHhcCcccCCCeEEEecccCC
Confidence 35689999999999987777776643 3445679999999999999999997754 7899999998665
Q ss_pred HH-------------HhhcchHHHHHHHHHHHhcCCeEEEEcCcchhhhhcCCcccccchhHHHHHHHHHHHHhcC----
Q 007575 403 EL-------------YVGMGASRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDG---- 465 (597)
Q Consensus 403 ~~-------------~vG~~e~~vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~eqtLnqLL~emdg---- 465 (597)
+. |.|....--..+|+.|..+ .||+|||..+...-+ ..||..++.
T Consensus 309 e~LlESELFGye~GAFTGA~~~GK~GlfE~A~gG---TLFLDEIgempl~LQ---------------aKLLRVLQEkei~ 370 (560)
T COG3829 309 ETLLESELFGYEKGAFTGASKGGKPGLFELANGG---TLFLDEIGEMPLPLQ---------------AKLLRVLQEKEIE 370 (560)
T ss_pred HHHHHHHHhCcCCccccccccCCCCcceeeccCC---eEEehhhccCCHHHH---------------HHHHHHHhhceEE
Confidence 43 2222222245678877766 899999988764432 344544432
Q ss_pred -CCC----CCcEEEEEecCCCCCCChhhhCCCCcce-------EEEecCCCHHHHHH----HHHHHHh----cCC--CC-
Q 007575 466 -FDS----NSAVIVLGATNRSDVLDPALRRPGRFDR-------VVMVETPDKIGREA----ILKVHVS----KKE--LP- 522 (597)
Q Consensus 466 -~~~----~~~VIVIaaTNrpd~LD~aLlRpgRFd~-------~I~v~~Pd~~eR~e----ILk~~l~----~~~--~~- 522 (597)
..+ ...|-||||||+. | ..+...|+|-. ++.+..|...+|.+ +...++. +.+ ++
T Consensus 371 rvG~t~~~~vDVRIIAATN~n--L-~~~i~~G~FReDLYYRLNV~~i~iPPLReR~eDI~~L~~~Fl~k~s~~~~~~v~~ 447 (560)
T COG3829 371 RVGGTKPIPVDVRIIAATNRN--L-EKMIAEGTFREDLYYRLNVIPITIPPLRERKEDIPLLAEYFLDKFSRRYGRNVKG 447 (560)
T ss_pred ecCCCCceeeEEEEEeccCcC--H-HHHHhcCcchhhheeeeceeeecCCCcccCcchHHHHHHHHHHHHHHHcCCCccc
Confidence 111 3468999999985 2 22333455532 45666788877753 2222332 222 11
Q ss_pred CCCCCCHHHHHHhCCCCCHHHHHHHHHHHHHHHHhcCCCcccHHHHH-HHHH
Q 007575 523 LAKDIDLGDIASMTTGFTGADLANLVNEAALLAGRLNKVVVEKIDFI-HAVE 573 (597)
Q Consensus 523 l~~dvdl~~LA~~t~G~SgaDL~~Lv~eAal~A~r~~~~~It~~d~~-~Al~ 573 (597)
+.++ .+..|.++-+.-+-++|+|++.+|...+. +...|+..|+- .+++
T Consensus 448 ls~~-a~~~L~~y~WPGNVRELeNviER~v~~~~--~~~~I~~~~lp~~~l~ 496 (560)
T COG3829 448 LSPD-ALALLLRYDWPGNVRELENVIERAVNLVE--SDGLIDADDLPAFALE 496 (560)
T ss_pred CCHH-HHHHHHhCCCCchHHHHHHHHHHHHhccC--Ccceeehhhcchhhhc
Confidence 2233 25666666666678999999999998553 33447777665 4433
No 150
>TIGR00368 Mg chelatase-related protein. The N-terminal end matches very strongly a pfam Mg_chelatase domain.
Probab=99.34 E-value=3e-11 Score=134.51 Aligned_cols=212 Identities=22% Similarity=0.304 Sum_probs=135.5
Q ss_pred CcccccccCChHHHHHHHHHHHHhcChhHHhhcCCCCCCceEEeCCCCChHHHHHHHHHHhc------------------
Q 007575 328 TITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEA------------------ 389 (597)
Q Consensus 328 ~vtf~dV~G~de~k~~L~eiv~~l~~p~~~~~lg~~~p~gVLL~GPPGTGKT~LArAIA~el------------------ 389 (597)
...|+||.|++.+++.+.-.+ ....+++|.||||||||++|+++++.+
T Consensus 188 ~~d~~dv~Gq~~~~~al~~aa--------------~~g~~vlliG~pGsGKTtlar~l~~llp~~~~~~~le~~~i~s~~ 253 (499)
T TIGR00368 188 DLDLKDIKGQQHAKRALEIAA--------------AGGHNLLLFGPPGSGKTMLASRLQGILPPLTNEEAIETARIWSLV 253 (499)
T ss_pred CCCHHHhcCcHHHHhhhhhhc--------------cCCCEEEEEecCCCCHHHHHHHHhcccCCCCCcEEEeccccccch
Confidence 348999999999876655443 233579999999999999999998632
Q ss_pred ----------CCCeeeechhhhHHHHhhcchHHHHHHHHHHHhcCCeEEEEcCcchhhhhcCCcccccchhHHHHHHHHH
Q 007575 390 ----------EVPFISCSASEFVELYVGMGASRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQL 459 (597)
Q Consensus 390 ----------~~pfi~is~sef~~~~vG~~e~~vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~eqtLnqL 459 (597)
..||...+++......+|.+...-...+..|..+ +|||||++.+.. .+++.|
T Consensus 254 g~~~~~~~~~~~Pf~~p~~s~s~~~~~ggg~~~~pG~i~lA~~G---vLfLDEi~e~~~---------------~~~~~L 315 (499)
T TIGR00368 254 GKLIDRKQIKQRPFRSPHHSASKPALVGGGPIPLPGEISLAHNG---VLFLDELPEFKR---------------SVLDAL 315 (499)
T ss_pred hhhccccccccCCccccccccchhhhhCCccccchhhhhccCCC---eEecCChhhCCH---------------HHHHHH
Confidence 2355554444333333343322222345555444 999999998753 244555
Q ss_pred HHHhcCCC-----------CCCcEEEEEecCCC------C-----------------CCChhhhCCCCcceEEEecCCCH
Q 007575 460 LTEMDGFD-----------SNSAVIVLGATNRS------D-----------------VLDPALRRPGRFDRVVMVETPDK 505 (597)
Q Consensus 460 L~emdg~~-----------~~~~VIVIaaTNrp------d-----------------~LD~aLlRpgRFd~~I~v~~Pd~ 505 (597)
+..|+... -...+.+|+++|.. + .+...|+. |||.++.++.++.
T Consensus 316 ~~~LE~~~v~i~r~g~~~~~pa~frlIaa~Npcpcg~~~~~~~~c~c~~~~~~~y~~~is~pllD--R~dl~~~~~~~~~ 393 (499)
T TIGR00368 316 REPIEDGSISISRASAKIFYPARFQLVAAMNPCPCGHYGGKNTHCRCSPQQISRYWNKLSGPFLD--RIDLSVEVPLLPP 393 (499)
T ss_pred HHHHHcCcEEEEecCcceeccCCeEEEEecCCcccCcCCCCcccccCCHHHHHHHhhhccHhHHh--hCCEEEEEcCCCH
Confidence 55554321 13568999999863 1 47788888 9999999997654
Q ss_pred HH-------------HHHHHHHHHhc----CCC---CCCCCCCHHHH----------------HHhCCCCCHHHHHHHHH
Q 007575 506 IG-------------REAILKVHVSK----KEL---PLAKDIDLGDI----------------ASMTTGFTGADLANLVN 549 (597)
Q Consensus 506 ~e-------------R~eILk~~l~~----~~~---~l~~dvdl~~L----------------A~~t~G~SgaDL~~Lv~ 549 (597)
.+ |..+.+.+..+ .+. .+...+....+ +....++|.+....+++
T Consensus 394 ~~l~~~~~~e~s~~ir~rV~~Ar~~q~~R~~~~~~~~~N~~l~~~~l~~~~~l~~~~~~~l~~a~~~~~lS~R~~~rilr 473 (499)
T TIGR00368 394 EKLLSTGSGESSAEVKQRVIKAREIQNIRYEKFANINKNADLNSDEIEQFCKLSAIDANDLEGALNKLGLSSRATHRILK 473 (499)
T ss_pred HHHhccCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccccCCHHHHHhhcCCCHHHHHHHHHHHHhcCCCchHHHHHHH
Confidence 32 22232221111 010 11222211111 11223589999999999
Q ss_pred HHHHHHHhcCCCcccHHHHHHHHH
Q 007575 550 EAALLAGRLNKVVVEKIDFIHAVE 573 (597)
Q Consensus 550 eAal~A~r~~~~~It~~d~~~Al~ 573 (597)
-|..+|...+.+.|+.+|+.+|+.
T Consensus 474 vArTiAdL~g~~~i~~~hv~eA~~ 497 (499)
T TIGR00368 474 VARTIADLKEEKNISREHLAEAIE 497 (499)
T ss_pred HHHHHHhhcCCCCCCHHHHHHHHh
Confidence 999999999999999999999975
No 151
>TIGR02329 propionate_PrpR propionate catabolism operon regulatory protein PrpR. At least five distinct pathways exists for the catabolism of propionate by way of propionyl-CoA. Members of this family represent the transcriptional regulatory protein PrpR, whose gene is found in most cases divergently transcribed from an operon for the methylcitric acid cycle of propionate catabolism. 2-methylcitric acid, a catabolite by this pathway, is a coactivator of PrpR.
Probab=99.33 E-value=5.8e-12 Score=141.06 Aligned_cols=212 Identities=20% Similarity=0.267 Sum_probs=135.5
Q ss_pred CcccccccCChHHHHHHHHHHHHhcChhHHhhcCCCCCCceEEeCCCCChHHHHHHHHHHh---cCCCeeeechhhhHHH
Q 007575 328 TITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGE---AEVPFISCSASEFVEL 404 (597)
Q Consensus 328 ~vtf~dV~G~de~k~~L~eiv~~l~~p~~~~~lg~~~p~gVLL~GPPGTGKT~LArAIA~e---l~~pfi~is~sef~~~ 404 (597)
..+|++++|..+..+.+.+.+..+.. ...+|||+|++||||+++|++|... .+.||+.++|..+.+.
T Consensus 208 ~~~f~~iiG~S~~m~~~~~~i~~~A~----------~~~pVLI~GE~GTGKe~lA~~IH~~S~r~~~pfv~inC~~l~e~ 277 (526)
T TIGR02329 208 RYRLDDLLGASAPMEQVRALVRLYAR----------SDATVLILGESGTGKELVAQAIHQLSGRRDFPFVAINCGAIAES 277 (526)
T ss_pred ccchhheeeCCHHHHHHHHHHHHHhC----------CCCcEEEECCCCcCHHHHHHHHHHhcCcCCCCEEEeccccCChh
Confidence 47799999999998888888765432 2347999999999999999999865 4679999999866432
Q ss_pred -----Hhhcch--------HHHHHHHHHHHhcCCeEEEEcCcchhhhhcCCcccccchhHHHHHHHHHHHHhcCCC----
Q 007575 405 -----YVGMGA--------SRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFD---- 467 (597)
Q Consensus 405 -----~vG~~e--------~~vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~eqtLnqLL~emdg~~---- 467 (597)
..|... .....+|+.|..+ .||||||+.|....+ ..|+..++.-.
T Consensus 278 lleseLFG~~~gaftga~~~~~~Gl~e~A~gG---TLfLdeI~~Lp~~~Q---------------~~Ll~~L~~~~~~r~ 339 (526)
T TIGR02329 278 LLEAELFGYEEGAFTGARRGGRTGLIEAAHRG---TLFLDEIGEMPLPLQ---------------TRLLRVLEEREVVRV 339 (526)
T ss_pred HHHHHhcCCcccccccccccccccchhhcCCc---eEEecChHhCCHHHH---------------HHHHHHHhcCcEEec
Confidence 122100 1123456666444 899999999875432 44555554211
Q ss_pred -C----CCcEEEEEecCCC--C-----CCChhhhCCCCcceEEEecCCCHHHHHH----HHHHHHhc----CCCCCCCCC
Q 007575 468 -S----NSAVIVLGATNRS--D-----VLDPALRRPGRFDRVVMVETPDKIGREA----ILKVHVSK----KELPLAKDI 527 (597)
Q Consensus 468 -~----~~~VIVIaaTNrp--d-----~LD~aLlRpgRFd~~I~v~~Pd~~eR~e----ILk~~l~~----~~~~l~~dv 527 (597)
+ ...+-+|++|+.. + .+.+.|.. |+. .+.+..|...+|.+ ++..++.+ .+.++.++.
T Consensus 340 g~~~~~~~dvRiIaat~~~l~~~v~~g~fr~dL~~--rL~-~~~I~lPPLReR~eDI~~L~~~fl~~~~~~~~~~~~~~a 416 (526)
T TIGR02329 340 GGTEPVPVDVRVVAATHCALTTAVQQGRFRRDLFY--RLS-ILRIALPPLRERPGDILPLAAEYLVQAAAALRLPDSEAA 416 (526)
T ss_pred CCCceeeecceEEeccCCCHHHHhhhcchhHHHHH--hcC-CcEEeCCCchhchhHHHHHHHHHHHHHHHHcCCCCCHHH
Confidence 1 1245788888765 1 12233332 443 46777788777753 33444432 223333321
Q ss_pred CHHH-------HHHhCCCCCHHHHHHHHHHHHHHHHhcCCCcccHHHHHHH
Q 007575 528 DLGD-------IASMTTGFTGADLANLVNEAALLAGRLNKVVVEKIDFIHA 571 (597)
Q Consensus 528 dl~~-------LA~~t~G~SgaDL~~Lv~eAal~A~r~~~~~It~~d~~~A 571 (597)
+.. |..+.+.-+-++|.+++.+++..+.......|+.+++...
T Consensus 417 -~~~~~~~~~~L~~y~WPGNvrEL~nvier~~i~~~~~~~~~I~~~~l~~~ 466 (526)
T TIGR02329 417 -AQVLAGVADPLQRYPWPGNVRELRNLVERLALELSAMPAGALTPDVLRAL 466 (526)
T ss_pred -HHHhHHHHHHHHhCCCCchHHHHHHHHHHHHHhcccCCCCccCHHHhhhh
Confidence 333 6666666677999999999998764333457888886543
No 152
>COG0714 MoxR-like ATPases [General function prediction only]
Probab=99.33 E-value=4.5e-11 Score=126.55 Aligned_cols=128 Identities=31% Similarity=0.422 Sum_probs=89.9
Q ss_pred CceEEeCCCCChHHHHHHHHHHhcCCCeeeechhhhHHHHhhcchHHHHH--------------HHHHHHhcCCeEEEEc
Q 007575 366 RGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFVELYVGMGASRVRD--------------LFARAKKEAPSIIFID 431 (597)
Q Consensus 366 ~gVLL~GPPGTGKT~LArAIA~el~~pfi~is~sef~~~~vG~~e~~vr~--------------lF~~A~~~aP~ILfID 431 (597)
.++||.||||||||+||+++|..++.+|+.+.|.......-..+...... +|...+ +|+++|
T Consensus 44 ~~vll~G~PG~gKT~la~~lA~~l~~~~~~i~~t~~l~p~d~~G~~~~~~~~~~~~~~~~~~gpl~~~~~----~ill~D 119 (329)
T COG0714 44 GHVLLEGPPGVGKTLLARALARALGLPFVRIQCTPDLLPSDLLGTYAYAALLLEPGEFRFVPGPLFAAVR----VILLLD 119 (329)
T ss_pred CCEEEECCCCccHHHHHHHHHHHhCCCeEEEecCCCCCHHHhcCchhHhhhhccCCeEEEecCCcccccc----eEEEEe
Confidence 46999999999999999999999999999999885533211111111111 111111 499999
Q ss_pred CcchhhhhcCCcccccchhHHHHHHHHHHHHhcC----------CCCCCcEEEEEecC-----CCCCCChhhhCCCCcce
Q 007575 432 EIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDG----------FDSNSAVIVLGATN-----RSDVLDPALRRPGRFDR 496 (597)
Q Consensus 432 EIDaL~~~r~~~~~~~~~~e~eqtLnqLL~emdg----------~~~~~~VIVIaaTN-----rpd~LD~aLlRpgRFd~ 496 (597)
||+...+ .+.+.|+..|+. +.-+.+++||+|.| ....|++++++ ||..
T Consensus 120 EInra~p---------------~~q~aLl~~l~e~~vtv~~~~~~~~~~~f~viaT~Np~e~~g~~~l~eA~ld--Rf~~ 182 (329)
T COG0714 120 EINRAPP---------------EVQNALLEALEERQVTVPGLTTIRLPPPFIVIATQNPGEYEGTYPLPEALLD--RFLL 182 (329)
T ss_pred ccccCCH---------------HHHHHHHHHHhCcEEEECCcCCcCCCCCCEEEEccCccccCCCcCCCHHHHh--hEEE
Confidence 9987643 355777777765 33457889999999 44678999999 9988
Q ss_pred EEEecCCC-HHHHHHHHHH
Q 007575 497 VVMVETPD-KIGREAILKV 514 (597)
Q Consensus 497 ~I~v~~Pd-~~eR~eILk~ 514 (597)
.++++.|+ ..+...++..
T Consensus 183 ~~~v~yp~~~~e~~~i~~~ 201 (329)
T COG0714 183 RIYVDYPDSEEEERIILAR 201 (329)
T ss_pred EEecCCCCchHHHHHHHHh
Confidence 99999994 4444444433
No 153
>TIGR00764 lon_rel lon-related putative ATP-dependent protease. Members of this family from Pyrococcus horikoshii and Pyrococcus abyssi each contain a predicted intein.
Probab=99.33 E-value=2.6e-11 Score=138.17 Aligned_cols=102 Identities=23% Similarity=0.300 Sum_probs=67.5
Q ss_pred CcEEEEEecCCC--CCCChhhhCCCCcc---eEEEecC--CC-HHHHHHHHHHH---HhcCCCCCCCCCC---HHHHHH-
Q 007575 470 SAVIVLGATNRS--DVLDPALRRPGRFD---RVVMVET--PD-KIGREAILKVH---VSKKELPLAKDID---LGDIAS- 534 (597)
Q Consensus 470 ~~VIVIaaTNrp--d~LD~aLlRpgRFd---~~I~v~~--Pd-~~eR~eILk~~---l~~~~~~l~~dvd---l~~LA~- 534 (597)
..+.||+++|.. ..++++|+. ||+ ..+.++. |+ .+.+.++.+.. +++.+ ..+.++ ++.|.+
T Consensus 267 ~dvrvIa~~~~~~l~~l~~~l~~--rf~~y~v~v~~~~~~~~~~e~~~~~~~~i~~~~~r~G--~l~~~s~~Av~~Li~~ 342 (608)
T TIGR00764 267 CDFILVASGNLDDLEGMHPALRS--RIRGYGYEVYMKDTMPDTPENRDKLVQFVAQEVKKDG--RIPHFTRDAVEEIVRE 342 (608)
T ss_pred cceEEEEECCHHHHhhcCHHHHH--HhcCCeEEEEeeccCCCCHHHHHHHHHHHHHHHHHhC--CCCcCCHHHHHHHHHH
Confidence 368899999875 578999999 998 6666643 44 55555544433 32221 111333 333331
Q ss_pred ---hC-----CCCCHHHHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHH
Q 007575 535 ---MT-----TGFTGADLANLVNEAALLAGRLNKVVVEKIDFIHAVERS 575 (597)
Q Consensus 535 ---~t-----~G~SgaDL~~Lv~eAal~A~r~~~~~It~~d~~~Al~~v 575 (597)
.. -..+.++|.+++++|...|..++...|+.+|+++|++..
T Consensus 343 ~~R~ag~r~~lsl~~R~L~~llR~A~~iA~~~~~~~I~~ehV~~Ai~~~ 391 (608)
T TIGR00764 343 AQRRAGRKDHLTLRLRELGGLVRAAGDIAKSSGKVYVTAEHVLKAKKLA 391 (608)
T ss_pred HHHHHhcccccCCCHHHHHHHHHHHHHHHHhcCCceecHHHHHHHHHHH
Confidence 11 113469999999999888888888999999999997754
No 154
>PRK15424 propionate catabolism operon regulatory protein PrpR; Provisional
Probab=99.33 E-value=5.6e-12 Score=141.31 Aligned_cols=210 Identities=22% Similarity=0.301 Sum_probs=133.5
Q ss_pred cccccccCChHHHHHHHHHHHHhcChhHHhhcCCCCCCceEEeCCCCChHHHHHHHHHHh-----------cCCCeeeec
Q 007575 329 ITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGE-----------AEVPFISCS 397 (597)
Q Consensus 329 vtf~dV~G~de~k~~L~eiv~~l~~p~~~~~lg~~~p~gVLL~GPPGTGKT~LArAIA~e-----------l~~pfi~is 397 (597)
.+|++++|.....+.+.+.+..+.. ...+|||+|++||||+++|++|... .+.||+.++
T Consensus 216 ~~f~~iiG~S~~m~~~~~~i~~~A~----------s~~pVLI~GE~GTGKe~~A~~IH~~~~~~~~~~S~r~~~pfv~in 285 (538)
T PRK15424 216 YVLGDLLGQSPQMEQVRQTILLYAR----------SSAAVLIQGETGTGKELAAQAIHREYFARHDARQGKKSHPFVAVN 285 (538)
T ss_pred cchhheeeCCHHHHHHHHHHHHHhC----------CCCcEEEECCCCCCHHHHHHHHHHhhcccccccCccCCCCeEEee
Confidence 5799999999998888888765432 2347999999999999999999876 467999999
Q ss_pred hhhhHHH-----Hhhcc------h--HHHHHHHHHHHhcCCeEEEEcCcchhhhhcCCcccccchhHHHHHHHHHHHHhc
Q 007575 398 ASEFVEL-----YVGMG------A--SRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMD 464 (597)
Q Consensus 398 ~sef~~~-----~vG~~------e--~~vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~eqtLnqLL~emd 464 (597)
|..+.+. ..|.. + ..-..+|+.|..+ .||||||+.|....+ ..|+..++
T Consensus 286 Caal~e~lleseLFG~~~gaftga~~~~~~Gl~e~A~gG---TLfLdeI~~Lp~~~Q---------------~kLl~~L~ 347 (538)
T PRK15424 286 CGAIAESLLEAELFGYEEGAFTGSRRGGRAGLFEIAHGG---TLFLDEIGEMPLPLQ---------------TRLLRVLE 347 (538)
T ss_pred cccCChhhHHHHhcCCccccccCccccccCCchhccCCC---EEEEcChHhCCHHHH---------------HHHHhhhh
Confidence 9866332 12211 0 1122456666544 999999999875432 44555554
Q ss_pred CCC-----C----CCcEEEEEecCCCCCCChhhhCCCCcce-------EEEecCCCHHHHHH----HHHHHHhc----CC
Q 007575 465 GFD-----S----NSAVIVLGATNRSDVLDPALRRPGRFDR-------VVMVETPDKIGREA----ILKVHVSK----KE 520 (597)
Q Consensus 465 g~~-----~----~~~VIVIaaTNrpd~LD~aLlRpgRFd~-------~I~v~~Pd~~eR~e----ILk~~l~~----~~ 520 (597)
.-. + ...+-||++||.. |. .+...|+|.. .+.+..|...+|.+ ++..++.+ .+
T Consensus 348 e~~~~r~G~~~~~~~dvRiIaat~~~--L~-~~v~~g~Fr~dL~yrL~~~~I~lPPLReR~eDI~~L~~~fl~~~~~~~~ 424 (538)
T PRK15424 348 EKEVTRVGGHQPVPVDVRVISATHCD--LE-EDVRQGRFRRDLFYRLSILRLQLPPLRERVADILPLAESFLKQSLAALS 424 (538)
T ss_pred cCeEEecCCCceeccceEEEEecCCC--HH-HHHhcccchHHHHHHhcCCeecCCChhhchhHHHHHHHHHHHHHHHHcC
Confidence 211 1 2346789998865 11 2222233321 56777888877753 34444443 33
Q ss_pred CCCCCCCC------HHHHHHhCCCCCHHHHHHHHHHHHHHHHhcCCCcccHHHHH
Q 007575 521 LPLAKDID------LGDIASMTTGFTGADLANLVNEAALLAGRLNKVVVEKIDFI 569 (597)
Q Consensus 521 ~~l~~dvd------l~~LA~~t~G~SgaDL~~Lv~eAal~A~r~~~~~It~~d~~ 569 (597)
.++.+++- ++.|..+.+.-+.++|+|++++++..+.......|+.+++.
T Consensus 425 ~~~~~~a~~~~~~a~~~L~~y~WPGNvREL~nvier~~i~~~~~~~~~i~~~~l~ 479 (538)
T PRK15424 425 APFSAALRQGLQQCETLLLHYDWPGNVRELRNLMERLALFLSVEPTPDLTPQFLQ 479 (538)
T ss_pred CCCCHHHHHhhHHHHHHHHhCCCCchHHHHHHHHHHHHHhcCCCCcCccCHHHhh
Confidence 34333221 14455555666779999999999987543333456666553
No 155
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=99.32 E-value=4e-11 Score=141.67 Aligned_cols=203 Identities=21% Similarity=0.309 Sum_probs=134.2
Q ss_pred ccccCChHHHHHHHHHHHHhcChhHHhhcCCCCCCceEEeCCCCChHHHHHHHHHHhc---CCCeeeechhhhHHH----
Q 007575 332 ADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEA---EVPFISCSASEFVEL---- 404 (597)
Q Consensus 332 ~dV~G~de~k~~L~eiv~~l~~p~~~~~lg~~~p~gVLL~GPPGTGKT~LArAIA~el---~~pfi~is~sef~~~---- 404 (597)
..|+|++++.+.+.+.+......-. ...++...+||+||||||||++|+++|..+ +.+++.++++++.+.
T Consensus 565 ~~v~GQ~~av~~v~~~i~~~~~gl~---~~~~p~~~~Lf~Gp~GvGKt~lA~~La~~l~~~~~~~i~~d~s~~~~~~~~~ 641 (852)
T TIGR03346 565 ERVVGQDEAVEAVSDAIRRSRAGLS---DPNRPIGSFLFLGPTGVGKTELAKALAEFLFDDEDAMVRIDMSEYMEKHSVA 641 (852)
T ss_pred cccCCChHHHHHHHHHHHHHhccCC---CCCCCCeEEEEEcCCCCCHHHHHHHHHHHhcCCCCcEEEEechhhcccchHH
Confidence 4689999999988888875321100 011234568999999999999999999976 579999999887442
Q ss_pred -Hhhcch-----HHHHHHHHHHHhcCCeEEEEcCcchhhhhcCCcccccchhHHHHHHHHHHHHhcCCC---------CC
Q 007575 405 -YVGMGA-----SRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFD---------SN 469 (597)
Q Consensus 405 -~vG~~e-----~~vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~eqtLnqLL~emdg~~---------~~ 469 (597)
..|... ..-..+....+....+||+|||||.+.+ .+.+.|+..|+.-. +-
T Consensus 642 ~l~g~~~g~~g~~~~g~l~~~v~~~p~~vlllDeieka~~---------------~v~~~Ll~~l~~g~l~d~~g~~vd~ 706 (852)
T TIGR03346 642 RLIGAPPGYVGYEEGGQLTEAVRRKPYSVVLFDEVEKAHP---------------DVFNVLLQVLDDGRLTDGQGRTVDF 706 (852)
T ss_pred HhcCCCCCccCcccccHHHHHHHcCCCcEEEEeccccCCH---------------HHHHHHHHHHhcCceecCCCeEEec
Confidence 222110 1112344444555567999999997743 34567777775321 12
Q ss_pred CcEEEEEecCCCC-------------------------CCChhhhCCCCcceEEEecCCCHHHHHHHHHHHHhc------
Q 007575 470 SAVIVLGATNRSD-------------------------VLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSK------ 518 (597)
Q Consensus 470 ~~VIVIaaTNrpd-------------------------~LD~aLlRpgRFd~~I~v~~Pd~~eR~eILk~~l~~------ 518 (597)
.+.+||+|||... .+.|+|+. |+|.++.+.+++.++..+|+...+..
T Consensus 707 rn~iiI~TSn~g~~~~~~~~~~~~~~~~~~~~~~~~~~~F~pel~~--Rid~IivF~PL~~e~l~~I~~l~L~~l~~~l~ 784 (852)
T TIGR03346 707 RNTVIIMTSNLGSQFIQELAGGDDYEEMREAVMEVLRAHFRPEFLN--RIDEIVVFHPLGREQIARIVEIQLGRLRKRLA 784 (852)
T ss_pred CCcEEEEeCCcchHhHhhhcccccHHHHHHHHHHHHHhhcCHHHhc--CcCeEEecCCcCHHHHHHHHHHHHHHHHHHHH
Confidence 4578899999831 13466766 99999999999999999998876642
Q ss_pred -CCC--CCCCCCCHHHHHHhCC--CCCHHHHHHHHHHHHHHH
Q 007575 519 -KEL--PLAKDIDLGDIASMTT--GFTGADLANLVNEAALLA 555 (597)
Q Consensus 519 -~~~--~l~~dvdl~~LA~~t~--G~SgaDL~~Lv~eAal~A 555 (597)
.++ .+.++ .++.|+.... .+..+.|.+++++.....
T Consensus 785 ~~~~~l~i~~~-a~~~L~~~~~~~~~gaR~L~~~i~~~i~~~ 825 (852)
T TIGR03346 785 ERKITLELSDA-ALDFLAEAGYDPVYGARPLKRAIQREIENP 825 (852)
T ss_pred HCCCeecCCHH-HHHHHHHhCCCCCCCchhHHHHHHHHHHHH
Confidence 122 22222 2566666533 456688888888765433
No 156
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=99.31 E-value=6.9e-11 Score=126.44 Aligned_cols=189 Identities=16% Similarity=0.185 Sum_probs=126.5
Q ss_pred CCcccccccCChHHHHHHHHHHHHhcChhHHhhcCCCCCCceEEeCCCCChHHHHHHHHHHhcCC-------Ceeee---
Q 007575 327 DTITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEV-------PFISC--- 396 (597)
Q Consensus 327 ~~vtf~dV~G~de~k~~L~eiv~~l~~p~~~~~lg~~~p~gVLL~GPPGTGKT~LArAIA~el~~-------pfi~i--- 396 (597)
.+..+++|+|++++++.|...+. ..+.|..+||+||+|+|||++|+.+|..+.+ |....
T Consensus 18 ~P~~~~~l~Gh~~a~~~L~~a~~-----------~grl~ha~L~~G~~G~GKttlA~~lA~~Llc~~~~~~~~~~~~~~~ 86 (351)
T PRK09112 18 SPSENTRLFGHEEAEAFLAQAYR-----------EGKLHHALLFEGPEGIGKATLAFHLANHILSHPDPAEAPETLADPD 86 (351)
T ss_pred CCCchhhccCcHHHHHHHHHHHH-----------cCCCCeeEeeECCCCCCHHHHHHHHHHHHcCCCccccCccccCCCC
Confidence 35689999999999999998876 2356778999999999999999999998754 21110
Q ss_pred -chhhhHHH--------H-h-------------hcchHHHHHHHHHHH----hcCCeEEEEcCcchhhhhcCCcccccch
Q 007575 397 -SASEFVEL--------Y-V-------------GMGASRVRDLFARAK----KEAPSIIFIDEIDAVAKSRDGRFRIVSN 449 (597)
Q Consensus 397 -s~sef~~~--------~-v-------------G~~e~~vr~lF~~A~----~~aP~ILfIDEIDaL~~~r~~~~~~~~~ 449 (597)
.|...... + + ..+...+|++.+... .+...|++|||+|.+..
T Consensus 87 ~~c~~c~~i~~~~hPdl~~l~~~~~~~~~~~~~~I~vd~iR~l~~~l~~~~~~g~~rVviIDeAd~l~~----------- 155 (351)
T PRK09112 87 PASPVWRQIAQGAHPNLLHITRPFDEKTGKFKTAITVDEIRRVGHFLSQTSGDGNWRIVIIDPADDMNR----------- 155 (351)
T ss_pred CCCHHHHHHHcCCCCCEEEeecccccccccccccCCHHHHHHHHHHhhhccccCCceEEEEEchhhcCH-----------
Confidence 11111000 0 0 011244555444333 23456999999999853
Q ss_pred hHHHHHHHHHHHHhcCCCCCCcEEEEEecCCCCCCChhhhCCCCcceEEEecCCCHHHHHHHHHHHHhcCCCCCCCCCCH
Q 007575 450 DEREQTLNQLLTEMDGFDSNSAVIVLGATNRSDVLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKDIDL 529 (597)
Q Consensus 450 ~e~eqtLnqLL~emdg~~~~~~VIVIaaTNrpd~LD~aLlRpgRFd~~I~v~~Pd~~eR~eILk~~l~~~~~~l~~dvdl 529 (597)
...|.||..|+.. ..+.++|..|+.++.+.+.+++ |+ ..+.+++|+.++..++++...... .+.++ .+
T Consensus 156 ----~aanaLLk~LEEp--p~~~~fiLit~~~~~llptIrS--Rc-~~i~l~pl~~~~~~~~L~~~~~~~--~~~~~-~~ 223 (351)
T PRK09112 156 ----NAANAILKTLEEP--PARALFILISHSSGRLLPTIRS--RC-QPISLKPLDDDELKKALSHLGSSQ--GSDGE-IT 223 (351)
T ss_pred ----HHHHHHHHHHhcC--CCCceEEEEECChhhccHHHHh--hc-cEEEecCCCHHHHHHHHHHhhccc--CCCHH-HH
Confidence 3458899999863 3345555567778888899988 77 589999999999999998743221 12222 25
Q ss_pred HHHHHhCCCCCHHHHHHHHHH
Q 007575 530 GDIASMTTGFTGADLANLVNE 550 (597)
Q Consensus 530 ~~LA~~t~G~SgaDL~~Lv~e 550 (597)
..++..+.| +++...++++.
T Consensus 224 ~~i~~~s~G-~pr~Al~ll~~ 243 (351)
T PRK09112 224 EALLQRSKG-SVRKALLLLNY 243 (351)
T ss_pred HHHHHHcCC-CHHHHHHHHhc
Confidence 667777765 56555555543
No 157
>CHL00095 clpC Clp protease ATP binding subunit
Probab=99.30 E-value=5.3e-11 Score=140.19 Aligned_cols=166 Identities=23% Similarity=0.317 Sum_probs=115.7
Q ss_pred ccccCChHHHHHHHHHHHHhcChhHHhhcCCCCC-CceEEeCCCCChHHHHHHHHHHhc---CCCeeeechhhhHHH---
Q 007575 332 ADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPP-RGVLLVGLPGTGKTLLAKAVAGEA---EVPFISCSASEFVEL--- 404 (597)
Q Consensus 332 ~dV~G~de~k~~L~eiv~~l~~p~~~~~lg~~~p-~gVLL~GPPGTGKT~LArAIA~el---~~pfi~is~sef~~~--- 404 (597)
+.|+|++++++.+...+...+..-. ....| ..+||+||+|||||.||+++|..+ +.+++.++++++.+.
T Consensus 509 ~~v~GQ~~ai~~l~~~i~~~~~gl~----~~~~p~~~~lf~Gp~GvGKt~lA~~LA~~l~~~~~~~~~~d~s~~~~~~~~ 584 (821)
T CHL00095 509 KRIIGQDEAVVAVSKAIRRARVGLK----NPNRPIASFLFSGPTGVGKTELTKALASYFFGSEDAMIRLDMSEYMEKHTV 584 (821)
T ss_pred CcCcChHHHHHHHHHHHHHHhhccc----CCCCCceEEEEECCCCCcHHHHHHHHHHHhcCCccceEEEEchhccccccH
Confidence 4689999999998888764321100 01223 347999999999999999999987 478999998887432
Q ss_pred --Hhhcc-----hHHHHHHHHHHHhcCCeEEEEcCcchhhhhcCCcccccchhHHHHHHHHHHHHhcCCC---------C
Q 007575 405 --YVGMG-----ASRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFD---------S 468 (597)
Q Consensus 405 --~vG~~-----e~~vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~eqtLnqLL~emdg~~---------~ 468 (597)
+.|.. -.....+.+..+....+||+|||+|.+.+ .+.+.|+..|+.-. +
T Consensus 585 ~~l~g~~~gyvg~~~~~~l~~~~~~~p~~VvllDeieka~~---------------~v~~~Llq~le~g~~~d~~g~~v~ 649 (821)
T CHL00095 585 SKLIGSPPGYVGYNEGGQLTEAVRKKPYTVVLFDEIEKAHP---------------DIFNLLLQILDDGRLTDSKGRTID 649 (821)
T ss_pred HHhcCCCCcccCcCccchHHHHHHhCCCeEEEECChhhCCH---------------HHHHHHHHHhccCceecCCCcEEe
Confidence 22211 11123455555666668999999998742 35577888777421 1
Q ss_pred CCcEEEEEecCCCCC-------------------------------------CChhhhCCCCcceEEEecCCCHHHHHHH
Q 007575 469 NSAVIVLGATNRSDV-------------------------------------LDPALRRPGRFDRVVMVETPDKIGREAI 511 (597)
Q Consensus 469 ~~~VIVIaaTNrpd~-------------------------------------LD~aLlRpgRFd~~I~v~~Pd~~eR~eI 511 (597)
..+.++|+|||.... +.|+++. |+|.+|.|.+.+.++..+|
T Consensus 650 ~~~~i~I~Tsn~g~~~i~~~~~~~gf~~~~~~~~~~~~~~~~~~~~~~~~~~f~pefln--Rid~ii~F~pL~~~~l~~I 727 (821)
T CHL00095 650 FKNTLIIMTSNLGSKVIETNSGGLGFELSENQLSEKQYKRLSNLVNEELKQFFRPEFLN--RLDEIIVFRQLTKNDVWEI 727 (821)
T ss_pred cCceEEEEeCCcchHHHHhhccccCCcccccccccccHHHHHHHHHHHHHHhcCHHHhc--cCCeEEEeCCCCHHHHHHH
Confidence 246889999885311 2345666 9999999999999999999
Q ss_pred HHHHHhc
Q 007575 512 LKVHVSK 518 (597)
Q Consensus 512 Lk~~l~~ 518 (597)
++..+.+
T Consensus 728 v~~~l~~ 734 (821)
T CHL00095 728 AEIMLKN 734 (821)
T ss_pred HHHHHHH
Confidence 8877753
No 158
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.30 E-value=4.3e-11 Score=130.11 Aligned_cols=144 Identities=25% Similarity=0.391 Sum_probs=106.9
Q ss_pred CCCceEEeCCCCChHHHHHHHHHHhcCCCeeee-chhhhHHHHhhcchHHHHHHHHHHHhcCCeEEEEcCcchhhhhcCC
Q 007575 364 PPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISC-SASEFVELYVGMGASRVRDLFARAKKEAPSIIFIDEIDAVAKSRDG 442 (597)
Q Consensus 364 ~p~gVLL~GPPGTGKT~LArAIA~el~~pfi~i-s~sef~~~~vG~~e~~vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~ 442 (597)
+-..+||+||||+|||.||-.+|...+.||+.+ +..+++.+.....-..++..|+.|.+..-+||++|+|+.|..-
T Consensus 537 ~lvSvLl~Gp~~sGKTaLAA~iA~~S~FPFvKiiSpe~miG~sEsaKc~~i~k~F~DAYkS~lsiivvDdiErLiD~--- 613 (744)
T KOG0741|consen 537 PLVSVLLEGPPGSGKTALAAKIALSSDFPFVKIISPEDMIGLSESAKCAHIKKIFEDAYKSPLSIIVVDDIERLLDY--- 613 (744)
T ss_pred cceEEEEecCCCCChHHHHHHHHhhcCCCeEEEeChHHccCccHHHHHHHHHHHHHHhhcCcceEEEEcchhhhhcc---
Confidence 445799999999999999999999999999985 5555554433334456889999999999899999999998642
Q ss_pred cccccchhHHHHHHHHHHHHhcCCCCCC-cEEEEEecCCCCCCC-hhhhCCCCcceEEEecCCCH-HHHHHHHHH
Q 007575 443 RFRIVSNDEREQTLNQLLTEMDGFDSNS-AVIVLGATNRSDVLD-PALRRPGRFDRVVMVETPDK-IGREAILKV 514 (597)
Q Consensus 443 ~~~~~~~~e~eqtLnqLL~emdg~~~~~-~VIVIaaTNrpd~LD-~aLlRpgRFd~~I~v~~Pd~-~eR~eILk~ 514 (597)
...+-....-++..|+..+...++.. +.+|++||.+.+.|. -.++. .|+..+.|+.... ++..+++..
T Consensus 614 --vpIGPRfSN~vlQaL~VllK~~ppkg~kLli~~TTS~~~vL~~m~i~~--~F~~~i~Vpnl~~~~~~~~vl~~ 684 (744)
T KOG0741|consen 614 --VPIGPRFSNLVLQALLVLLKKQPPKGRKLLIFGTTSRREVLQEMGILD--CFSSTIHVPNLTTGEQLLEVLEE 684 (744)
T ss_pred --cccCchhhHHHHHHHHHHhccCCCCCceEEEEecccHHHHHHHcCHHH--hhhheeecCccCchHHHHHHHHH
Confidence 23455666778888888888766654 566777777665542 33445 7998888887654 555565554
No 159
>PRK10865 protein disaggregation chaperone; Provisional
Probab=99.29 E-value=8e-11 Score=139.02 Aligned_cols=167 Identities=25% Similarity=0.329 Sum_probs=112.2
Q ss_pred ccccCChHHHHHHHHHHHHhcChhHHhhcCCCCCCceEEeCCCCChHHHHHHHHHHhc---CCCeeeechhhhHHH----
Q 007575 332 ADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEA---EVPFISCSASEFVEL---- 404 (597)
Q Consensus 332 ~dV~G~de~k~~L~eiv~~l~~p~~~~~lg~~~p~gVLL~GPPGTGKT~LArAIA~el---~~pfi~is~sef~~~---- 404 (597)
+.|+|++++.+.+.+.+...+..-.. ..++...+||+||||||||++|+++|..+ +.+|+.++|+++.+.
T Consensus 568 ~~viGQ~~ai~~l~~~i~~~~~gl~~---~~~p~~~~Lf~Gp~G~GKT~lA~aLa~~l~~~~~~~i~id~se~~~~~~~~ 644 (857)
T PRK10865 568 HRVIGQNEAVEAVSNAIRRSRAGLSD---PNRPIGSFLFLGPTGVGKTELCKALANFMFDSDDAMVRIDMSEFMEKHSVS 644 (857)
T ss_pred CeEeCCHHHHHHHHHHHHHHHhcccC---CCCCCceEEEECCCCCCHHHHHHHHHHHhhcCCCcEEEEEhHHhhhhhhHH
Confidence 46899999999988888754311000 01122358999999999999999999876 568999999988543
Q ss_pred -Hhhcc-----hHHHHHHHHHHHhcCCeEEEEcCcchhhhhcCCcccccchhHHHHHHHHHHHHhcCC--C-------CC
Q 007575 405 -YVGMG-----ASRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGF--D-------SN 469 (597)
Q Consensus 405 -~vG~~-----e~~vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~eqtLnqLL~emdg~--~-------~~ 469 (597)
..|.. ...-..+....+....+||+|||++.+.+ .+.+.|+..|+.- . +.
T Consensus 645 ~LiG~~pgy~g~~~~g~l~~~v~~~p~~vLllDEieka~~---------------~v~~~Ll~ile~g~l~d~~gr~vd~ 709 (857)
T PRK10865 645 RLVGAPPGYVGYEEGGYLTEAVRRRPYSVILLDEVEKAHP---------------DVFNILLQVLDDGRLTDGQGRTVDF 709 (857)
T ss_pred HHhCCCCcccccchhHHHHHHHHhCCCCeEEEeehhhCCH---------------HHHHHHHHHHhhCceecCCceEEee
Confidence 12211 01111122233334448999999987642 2446677766531 1 12
Q ss_pred CcEEEEEecCCC-------------------------CCCChhhhCCCCcceEEEecCCCHHHHHHHHHHHHhc
Q 007575 470 SAVIVLGATNRS-------------------------DVLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSK 518 (597)
Q Consensus 470 ~~VIVIaaTNrp-------------------------d~LD~aLlRpgRFd~~I~v~~Pd~~eR~eILk~~l~~ 518 (597)
.+.+||+|||.. ..+.|+|+. |+|.++.+.+++.++..+|++..+.+
T Consensus 710 rn~iiI~TSN~g~~~~~~~~~~~~~~~~~~~~~~~~~~~f~PELln--Rld~iivF~PL~~edl~~Iv~~~L~~ 781 (857)
T PRK10865 710 RNTVVIMTSNLGSDLIQERFGELDYAHMKELVLGVVSHNFRPEFIN--RIDEVVVFHPLGEQHIASIAQIQLQR 781 (857)
T ss_pred cccEEEEeCCcchHHHHHhccccchHHHHHHHHHHHcccccHHHHH--hCCeeEecCCCCHHHHHHHHHHHHHH
Confidence 346788899873 124578887 99999999999999999988877754
No 160
>TIGR01817 nifA Nif-specific regulatory protein. This model represents NifA, a DNA-binding regulatory protein for nitrogen fixation. The model produces scores between the trusted and noise cutoffs for a well-described NifA homolog in Aquifex aeolicus (which lacks nitrogenase), for transcriptional activators of alternative nitrogenases (VFe or FeFe instead of MoFe), and truncated forms.
Probab=99.28 E-value=1.2e-11 Score=139.00 Aligned_cols=209 Identities=22% Similarity=0.295 Sum_probs=133.2
Q ss_pred CCCcccccccCChHHHHHHHHHHHHhcChhHHhhcCCCCCCceEEeCCCCChHHHHHHHHHHhc---CCCeeeechhhhH
Q 007575 326 GDTITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEA---EVPFISCSASEFV 402 (597)
Q Consensus 326 ~~~vtf~dV~G~de~k~~L~eiv~~l~~p~~~~~lg~~~p~gVLL~GPPGTGKT~LArAIA~el---~~pfi~is~sef~ 402 (597)
.+..+|++++|.+...+++.+.+..+.. ....|||+|++||||+++|++|.... +.||+.++|..+.
T Consensus 190 ~~~~~~~~liG~s~~~~~~~~~~~~~a~----------~~~pvli~Ge~GtGK~~lA~~ih~~s~r~~~pfv~i~c~~~~ 259 (534)
T TIGR01817 190 RRSGKEDGIIGKSPAMRQVVDQARVVAR----------SNSTVLLRGESGTGKELIAKAIHYLSPRAKRPFVKVNCAALS 259 (534)
T ss_pred cccCccCceEECCHHHHHHHHHHHHHhC----------cCCCEEEECCCCccHHHHHHHHHHhCCCCCCCeEEeecCCCC
Confidence 4457899999999998888887775432 24479999999999999999998764 6799999998663
Q ss_pred HHH-----hhcch-------HHHHHHHHHHHhcCCeEEEEcCcchhhhhcCCcccccchhHHHHHHHHHHHHhcCCC---
Q 007575 403 ELY-----VGMGA-------SRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFD--- 467 (597)
Q Consensus 403 ~~~-----vG~~e-------~~vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~eqtLnqLL~emdg~~--- 467 (597)
+.. .|... .....+|+.+. ..+|||||||.|....+ ..|+..++.-.
T Consensus 260 ~~~~~~~lfg~~~~~~~~~~~~~~g~~~~a~---~GtL~ldei~~L~~~~Q---------------~~Ll~~l~~~~~~~ 321 (534)
T TIGR01817 260 ETLLESELFGHEKGAFTGAIAQRKGRFELAD---GGTLFLDEIGEISPAFQ---------------AKLLRVLQEGEFER 321 (534)
T ss_pred HHHHHHHHcCCCCCccCCCCcCCCCcccccC---CCeEEEechhhCCHHHH---------------HHHHHHHhcCcEEE
Confidence 321 12110 00111233332 34999999999865432 44555554211
Q ss_pred --C----CCcEEEEEecCCC-------CCCChhhhCCCCcceEEEecCCCHHHHH----HHHHHHHhc----CC--CCCC
Q 007575 468 --S----NSAVIVLGATNRS-------DVLDPALRRPGRFDRVVMVETPDKIGRE----AILKVHVSK----KE--LPLA 524 (597)
Q Consensus 468 --~----~~~VIVIaaTNrp-------d~LD~aLlRpgRFd~~I~v~~Pd~~eR~----eILk~~l~~----~~--~~l~ 524 (597)
+ ...+.+|++|+.. ..+.+.|.. |+. .+.+..|...+|. .++..++.+ .+ ..+.
T Consensus 322 ~~~~~~~~~~~riI~~s~~~l~~~~~~~~f~~~L~~--rl~-~~~i~lPpLreR~eDi~~L~~~~l~~~~~~~~~~~~~s 398 (534)
T TIGR01817 322 VGGNRTLKVDVRLVAATNRDLEEAVAKGEFRADLYY--RIN-VVPIFLPPLRERREDIPLLAEAFLEKFNRENGRPLTIT 398 (534)
T ss_pred CCCCceEeecEEEEEeCCCCHHHHHHcCCCCHHHHH--Hhc-CCeeeCCCcccccccHHHHHHHHHHHHHHHcCCCCCCC
Confidence 1 1247888888764 123334433 443 4556666665553 344444432 12 2233
Q ss_pred CCCCHHHHHHhCCCCCHHHHHHHHHHHHHHHHhcCCCcccHHHHH
Q 007575 525 KDIDLGDIASMTTGFTGADLANLVNEAALLAGRLNKVVVEKIDFI 569 (597)
Q Consensus 525 ~dvdl~~LA~~t~G~SgaDL~~Lv~eAal~A~r~~~~~It~~d~~ 569 (597)
++ .++.|..+.+.-+.++|.+++++|+..+ ....|+.+|+.
T Consensus 399 ~~-a~~~L~~~~WPGNvrEL~~v~~~a~~~~---~~~~I~~~~l~ 439 (534)
T TIGR01817 399 PS-AIRVLMSCKWPGNVRELENCLERTATLS---RSGTITRSDFS 439 (534)
T ss_pred HH-HHHHHHhCCCCChHHHHHHHHHHHHHhC---CCCcccHHHCc
Confidence 33 3666777776667899999999998765 45678888875
No 161
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=99.28 E-value=2.9e-11 Score=138.68 Aligned_cols=196 Identities=24% Similarity=0.331 Sum_probs=135.4
Q ss_pred ccccCChHHHHHHHHHHHHhcChhHHhhcCCCCCCceEEeCCCCChHHHHHHHHHHhcC---CCeeeechhhhHHH----
Q 007575 332 ADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAE---VPFISCSASEFVEL---- 404 (597)
Q Consensus 332 ~dV~G~de~k~~L~eiv~~l~~p~~~~~lg~~~p~gVLL~GPPGTGKT~LArAIA~el~---~pfi~is~sef~~~---- 404 (597)
..|+|++++...+...|...+.--. -..+|-...||.||+|+|||-||+++|..+. ..++.+++|+|++.
T Consensus 491 ~rViGQd~AV~avs~aIrraRaGL~---dp~rPigsFlF~GPTGVGKTELAkaLA~~Lfg~e~aliR~DMSEy~EkHsVS 567 (786)
T COG0542 491 KRVIGQDEAVEAVSDAIRRARAGLG---DPNRPIGSFLFLGPTGVGKTELAKALAEALFGDEQALIRIDMSEYMEKHSVS 567 (786)
T ss_pred cceeChHHHHHHHHHHHHHHhcCCC---CCCCCceEEEeeCCCcccHHHHHHHHHHHhcCCCccceeechHHHHHHHHHH
Confidence 3589999999988888875221100 0122334677899999999999999999986 89999999999886
Q ss_pred --------HhhcchHHHHHHHHHHHhcCCeEEEEcCcchhhhhcCCcccccchhHHHHHHHHHHHHhcCCCC--------
Q 007575 405 --------YVGMGASRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDS-------- 468 (597)
Q Consensus 405 --------~vG~~e~~vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~eqtLnqLL~emdg~~~-------- 468 (597)
|||-.+ =..+-+..+....|||++|||+.-- ..++|-||+.||.-.-
T Consensus 568 rLIGaPPGYVGyee--GG~LTEaVRr~PySViLlDEIEKAH---------------pdV~nilLQVlDdGrLTD~~Gr~V 630 (786)
T COG0542 568 RLIGAPPGYVGYEE--GGQLTEAVRRKPYSVILLDEIEKAH---------------PDVFNLLLQVLDDGRLTDGQGRTV 630 (786)
T ss_pred HHhCCCCCCceecc--ccchhHhhhcCCCeEEEechhhhcC---------------HHHHHHHHHHhcCCeeecCCCCEE
Confidence 444433 2345556666777999999998753 3477999999974211
Q ss_pred -CCcEEEEEecCCCC----------------------------CCChhhhCCCCcceEEEecCCCHHHHHHHHHHHHhcC
Q 007575 469 -NSAVIVLGATNRSD----------------------------VLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKK 519 (597)
Q Consensus 469 -~~~VIVIaaTNrpd----------------------------~LD~aLlRpgRFd~~I~v~~Pd~~eR~eILk~~l~~~ 519 (597)
-.+.|||+|||--. .+.|+++. |+|.+|.|.+.+.+...+|+...+.+.
T Consensus 631 dFrNtiIImTSN~Gs~~i~~~~~~~~~~~~~~~~~~v~~~l~~~F~PEFLN--Rid~II~F~~L~~~~l~~Iv~~~L~~l 708 (786)
T COG0542 631 DFRNTIIIMTSNAGSEEILRDADGDDFADKEALKEAVMEELKKHFRPEFLN--RIDEIIPFNPLSKEVLERIVDLQLNRL 708 (786)
T ss_pred ecceeEEEEecccchHHHHhhccccccchhhhHHHHHHHHHHhhCCHHHHh--hcccEEeccCCCHHHHHHHHHHHHHHH
Confidence 13588999998520 13466777 999999999999999999988777542
Q ss_pred -------CCCC--CCCCCHHHHHHhCC--CCCHHHHHHHHHH
Q 007575 520 -------ELPL--AKDIDLGDIASMTT--GFTGADLANLVNE 550 (597)
Q Consensus 520 -------~~~l--~~dvdl~~LA~~t~--G~SgaDL~~Lv~e 550 (597)
++.+ .++ -.+.|+.... .|-.+-|..++++
T Consensus 709 ~~~L~~~~i~l~~s~~-a~~~l~~~gyd~~~GARpL~R~Iq~ 749 (786)
T COG0542 709 AKRLAERGITLELSDE-AKDFLAEKGYDPEYGARPLRRAIQQ 749 (786)
T ss_pred HHHHHhCCceEEECHH-HHHHHHHhccCCCcCchHHHHHHHH
Confidence 2221 122 1455555442 3444566665554
No 162
>PRK10820 DNA-binding transcriptional regulator TyrR; Provisional
Probab=99.27 E-value=2.9e-11 Score=135.64 Aligned_cols=207 Identities=20% Similarity=0.261 Sum_probs=129.5
Q ss_pred CCcccccccCChHHHHHHHHHHHHhcChhHHhhcCCCCCCceEEeCCCCChHHHHHHHHHHhc---CCCeeeechhhhHH
Q 007575 327 DTITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEA---EVPFISCSASEFVE 403 (597)
Q Consensus 327 ~~vtf~dV~G~de~k~~L~eiv~~l~~p~~~~~lg~~~p~gVLL~GPPGTGKT~LArAIA~el---~~pfi~is~sef~~ 403 (597)
...+|++++|.....+++.+.+..+.. ....|||+|++||||+++|+++.... +.||+.++|..+.+
T Consensus 199 ~~~~f~~~ig~s~~~~~~~~~~~~~A~----------~~~pvlI~GE~GtGK~~lA~aiH~~s~r~~~pfv~inca~~~~ 268 (520)
T PRK10820 199 DDSAFSQIVAVSPKMRQVVEQARKLAM----------LDAPLLITGDTGTGKDLLAYACHLRSPRGKKPFLALNCASIPD 268 (520)
T ss_pred ccccccceeECCHHHHHHHHHHHHHhC----------CCCCEEEECCCCccHHHHHHHHHHhCCCCCCCeEEeccccCCH
Confidence 457899999999887776666654322 23469999999999999999996643 57999999987643
Q ss_pred H-----Hhhcch-------HHHHHHHHHHHhcCCeEEEEcCcchhhhhcCCcccccchhHHHHHHHHHHHHhcC--CC--
Q 007575 404 L-----YVGMGA-------SRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDG--FD-- 467 (597)
Q Consensus 404 ~-----~vG~~e-------~~vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~eqtLnqLL~emdg--~~-- 467 (597)
. ..|... .....+|+.|..+ .|||||||.|....+ ..|+..++. +.
T Consensus 269 ~~~e~elFG~~~~~~~~~~~~~~g~~e~a~~G---tL~LdeI~~L~~~~Q---------------~~Ll~~l~~~~~~~~ 330 (520)
T PRK10820 269 DVVESELFGHAPGAYPNALEGKKGFFEQANGG---SVLLDEIGEMSPRMQ---------------AKLLRFLNDGTFRRV 330 (520)
T ss_pred HHHHHHhcCCCCCCcCCcccCCCChhhhcCCC---EEEEeChhhCCHHHH---------------HHHHHHHhcCCcccC
Confidence 2 122111 1112346555433 899999999865432 344444432 11
Q ss_pred -----CCCcEEEEEecCCC-------CCCChhhhCCCCcceEEEecCCCHHHHHH----H----HHHHHhcCCC---CCC
Q 007575 468 -----SNSAVIVLGATNRS-------DVLDPALRRPGRFDRVVMVETPDKIGREA----I----LKVHVSKKEL---PLA 524 (597)
Q Consensus 468 -----~~~~VIVIaaTNrp-------d~LD~aLlRpgRFd~~I~v~~Pd~~eR~e----I----Lk~~l~~~~~---~l~ 524 (597)
....+.||++|+.+ ..+.+.|.. |+. .+.+..|...+|.+ + ++.+..+.+. .+.
T Consensus 331 g~~~~~~~~vRiI~st~~~l~~l~~~g~f~~dL~~--rL~-~~~i~lPpLreR~~Di~~L~~~fl~~~~~~~g~~~~~ls 407 (520)
T PRK10820 331 GEDHEVHVDVRVICATQKNLVELVQKGEFREDLYY--RLN-VLTLNLPPLRDRPQDIMPLTELFVARFADEQGVPRPKLA 407 (520)
T ss_pred CCCcceeeeeEEEEecCCCHHHHHHcCCccHHHHh--hcC-eeEEeCCCcccChhHHHHHHHHHHHHHHHHcCCCCCCcC
Confidence 12357788888764 224455655 554 47777888777763 2 2323322222 233
Q ss_pred CCCCHHHHHHhCCCCCHHHHHHHHHHHHHHHHhcCCCcccHHHH
Q 007575 525 KDIDLGDIASMTTGFTGADLANLVNEAALLAGRLNKVVVEKIDF 568 (597)
Q Consensus 525 ~dvdl~~LA~~t~G~SgaDL~~Lv~eAal~A~r~~~~~It~~d~ 568 (597)
++ .++.|..+.+.-+.++|.+++.+|+..+ ....|+.+|+
T Consensus 408 ~~-a~~~L~~y~WPGNvreL~nvl~~a~~~~---~~~~i~~~~~ 447 (520)
T PRK10820 408 AD-LNTVLTRYGWPGNVRQLKNAIYRALTQL---EGYELRPQDI 447 (520)
T ss_pred HH-HHHHHhcCCCCCHHHHHHHHHHHHHHhC---CCCcccHHHc
Confidence 33 2555555555557799999999998765 3445666664
No 163
>KOG2680 consensus DNA helicase TIP49, TBP-interacting protein [Transcription]
Probab=99.27 E-value=7.2e-11 Score=121.15 Aligned_cols=117 Identities=17% Similarity=0.174 Sum_probs=91.2
Q ss_pred EEEEecCC------------CCCCChhhhCCCCcceEEEecCCCHHHHHHHHHHHHhcCCCCCCCCCCHHHHHHhCCCCC
Q 007575 473 IVLGATNR------------SDVLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTTGFT 540 (597)
Q Consensus 473 IVIaaTNr------------pd~LD~aLlRpgRFd~~I~v~~Pd~~eR~eILk~~l~~~~~~l~~dvdl~~LA~~t~G~S 540 (597)
++|.+||+ |+-++-.|+. |.- .|.-.+++.++.++||+..+.+..+.+.++ .++.|.......+
T Consensus 319 iiimaTNrgit~iRGTn~~SphGiP~D~lD--R~l-II~t~py~~~d~~~IL~iRc~EEdv~m~~~-A~d~Lt~i~~~ts 394 (454)
T KOG2680|consen 319 IIIMATNRGITRIRGTNYRSPHGIPIDLLD--RML-IISTQPYTEEDIKKILRIRCQEEDVEMNPD-ALDLLTKIGEATS 394 (454)
T ss_pred EEEEEcCCceEEeecCCCCCCCCCcHHHhh--hhh-eeecccCcHHHHHHHHHhhhhhhccccCHH-HHHHHHHhhhhhh
Confidence 66677776 5667777777 653 677788999999999999999888777766 3777777777677
Q ss_pred HHHHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHhccccccccccchhhhhh
Q 007575 541 GADLANLVNEAALLAGRLNKVVVEKIDFIHAVERSIAVSLSLSLSLSLQASIS 593 (597)
Q Consensus 541 gaDL~~Lv~eAal~A~r~~~~~It~~d~~~Al~~v~~g~~k~s~~ls~q~~l~ 593 (597)
-+...+|+..|.+.|.+++...+..+|++.+++-++-....-..+-..++.++
T Consensus 395 LRYai~Lit~a~~~~~krk~~~v~~~di~r~y~LFlD~~Rs~~yl~E~~~~y~ 447 (454)
T KOG2680|consen 395 LRYAIHLITAASLVCLKRKGKVVEVDDIERVYRLFLDEKRSMKYLTEYQSGYL 447 (454)
T ss_pred HHHHHHHHHHHHHHHHHhcCceeehhHHHHHHHHHhhhhhhhHHHHHhhhccc
Confidence 88889999999999999999999999999999988865543333444444443
No 164
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=99.27 E-value=9.2e-11 Score=126.13 Aligned_cols=185 Identities=17% Similarity=0.173 Sum_probs=124.5
Q ss_pred CCcccccccCChHHHHHHHHHHHHhcChhHHhhcCCCCCCceEEeCCCCChHHHHHHHHHHhcCCCe-------e-----
Q 007575 327 DTITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPF-------I----- 394 (597)
Q Consensus 327 ~~vtf~dV~G~de~k~~L~eiv~~l~~p~~~~~lg~~~p~gVLL~GPPGTGKT~LArAIA~el~~pf-------i----- 394 (597)
.+.++++|+|++++++.|.+.+.. .+.|..+||+||+|+||+++|.++|+.+-+.- .
T Consensus 14 ~P~~~~~iiGq~~~~~~L~~~~~~-----------~rl~HA~Lf~Gp~G~GK~~lA~~~A~~Llc~~~~~~~~~~~~~~~ 82 (365)
T PRK07471 14 HPRETTALFGHAAAEAALLDAYRS-----------GRLHHAWLIGGPQGIGKATLAYRMARFLLATPPPGGDGAVPPPTS 82 (365)
T ss_pred CCCchhhccChHHHHHHHHHHHHc-----------CCCCceEEEECCCCCCHHHHHHHHHHHHhCCCCCCCCcccccccc
Confidence 456899999999999999988762 35677899999999999999999999763210 0
Q ss_pred ---eechh-----------hhHHHHh---h--------cchHHHHHHHHHHH----hcCCeEEEEcCcchhhhhcCCccc
Q 007575 395 ---SCSAS-----------EFVELYV---G--------MGASRVRDLFARAK----KEAPSIIFIDEIDAVAKSRDGRFR 445 (597)
Q Consensus 395 ---~is~s-----------ef~~~~v---G--------~~e~~vr~lF~~A~----~~aP~ILfIDEIDaL~~~r~~~~~ 445 (597)
.-.|. ++..... + -....+|++.+.+. ...|.|++|||+|.+..
T Consensus 83 l~~~~~c~~c~~i~~~~HPDl~~i~~~~~~~~~~~~~~I~VdqiR~l~~~~~~~~~~~~~kVviIDead~m~~------- 155 (365)
T PRK07471 83 LAIDPDHPVARRIAAGAHGGLLTLERSWNEKGKRLRTVITVDEVRELISFFGLTAAEGGWRVVIVDTADEMNA------- 155 (365)
T ss_pred ccCCCCChHHHHHHccCCCCeEEEecccccccccccccccHHHHHHHHHHhCcCcccCCCEEEEEechHhcCH-------
Confidence 00111 1100000 1 12345666655543 34578999999998842
Q ss_pred ccchhHHHHHHHHHHHHhcCCCCCCcEEEEEecCCCCCCChhhhCCCCcceEEEecCCCHHHHHHHHHHHHhcCCCCCCC
Q 007575 446 IVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATNRSDVLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAK 525 (597)
Q Consensus 446 ~~~~~e~eqtLnqLL~emdg~~~~~~VIVIaaTNrpd~LD~aLlRpgRFd~~I~v~~Pd~~eR~eILk~~l~~~~~~l~~ 525 (597)
...|.||..++. .....++|.+|+.++.+.+.+++ |+. .+.+++|+.++..+++...... . +
T Consensus 156 --------~aanaLLK~LEe--pp~~~~~IL~t~~~~~llpti~S--Rc~-~i~l~~l~~~~i~~~L~~~~~~----~-~ 217 (365)
T PRK07471 156 --------NAANALLKVLEE--PPARSLFLLVSHAPARLLPTIRS--RCR-KLRLRPLAPEDVIDALAAAGPD----L-P 217 (365)
T ss_pred --------HHHHHHHHHHhc--CCCCeEEEEEECCchhchHHhhc--cce-EEECCCCCHHHHHHHHHHhccc----C-C
Confidence 355889999984 34456777788889889898887 774 8999999999999998875421 1 1
Q ss_pred CCCHHHHHHhCCCCCHHHHHHHH
Q 007575 526 DIDLGDIASMTTGFTGADLANLV 548 (597)
Q Consensus 526 dvdl~~LA~~t~G~SgaDL~~Lv 548 (597)
+..+..++..+.| ++....+++
T Consensus 218 ~~~~~~l~~~s~G-sp~~Al~ll 239 (365)
T PRK07471 218 DDPRAALAALAEG-SVGRALRLA 239 (365)
T ss_pred HHHHHHHHHHcCC-CHHHHHHHh
Confidence 1123456666665 444444433
No 165
>smart00350 MCM minichromosome maintenance proteins.
Probab=99.26 E-value=7.7e-11 Score=131.94 Aligned_cols=224 Identities=20% Similarity=0.169 Sum_probs=134.8
Q ss_pred cccCChHHHHHHHHHHHHhcChhHHhhcCCCCCCceEEeCCCCChHHHHHHHHHHhcCC-Ceeee---chhhhHHHHhhc
Q 007575 333 DVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEV-PFISC---SASEFVELYVGM 408 (597)
Q Consensus 333 dV~G~de~k~~L~eiv~~l~~p~~~~~lg~~~p~gVLL~GPPGTGKT~LArAIA~el~~-pfi~i---s~sef~~~~vG~ 408 (597)
++.|++.+|..|.-.+---..+..-.....+...+|||+|+||||||++|+++++.+.. +|... ++..+.......
T Consensus 204 ~i~G~~~~k~~l~l~l~gg~~~~~~~~~~~r~~~~vLL~G~pGtGKs~lar~l~~~~~r~~~~~~~~~~~~~l~~~~~~~ 283 (509)
T smart00350 204 SIYGHEDIKKAILLLLFGGVHKNLPDGMKIRGDINILLLGDPGTAKSQLLKYVEKTAPRAVYTTGKGSSAVGLTAAVTRD 283 (509)
T ss_pred cccCcHHHHHHHHHHHhCCCccccCCCccccccceEEEeCCCChhHHHHHHHHHHHcCcceEcCCCCCCcCCccccceEc
Confidence 47899988766654432111110000112233457999999999999999999997753 33321 221121100000
Q ss_pred ---chHHH-HHHHHHHHhcCCeEEEEcCcchhhhhcCCcccccchhHHHHHHHHHHHHhcCCC-----------CCCcEE
Q 007575 409 ---GASRV-RDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFD-----------SNSAVI 473 (597)
Q Consensus 409 ---~e~~v-r~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~eqtLnqLL~emdg~~-----------~~~~VI 473 (597)
++..+ ...+..|. ..+++|||+|.+... +...|+..|+.-. -+..+.
T Consensus 284 ~~~g~~~~~~G~l~~A~---~Gil~iDEi~~l~~~---------------~q~~L~e~me~~~i~i~k~G~~~~l~~~~~ 345 (509)
T smart00350 284 PETREFTLEGGALVLAD---NGVCCIDEFDKMDDS---------------DRTAIHEAMEQQTISIAKAGITTTLNARCS 345 (509)
T ss_pred cCcceEEecCccEEecC---CCEEEEechhhCCHH---------------HHHHHHHHHhcCEEEEEeCCEEEEecCCcE
Confidence 00000 01112222 349999999998533 2345555664321 135688
Q ss_pred EEEecCCCC-------------CCChhhhCCCCcceEEEe-cCCCHHHHHHHHHHHHhcCC-------CC----------
Q 007575 474 VLGATNRSD-------------VLDPALRRPGRFDRVVMV-ETPDKIGREAILKVHVSKKE-------LP---------- 522 (597)
Q Consensus 474 VIaaTNrpd-------------~LD~aLlRpgRFd~~I~v-~~Pd~~eR~eILk~~l~~~~-------~~---------- 522 (597)
||||+|..+ .|++++++ |||..+.+ +.|+.+...+|.++.+.... ..
T Consensus 346 viAa~NP~~g~y~~~~~~~~n~~l~~~lLs--RFdLi~~~~d~~~~~~d~~i~~~i~~~~~~~~~~~~~~~~~~~~~~~l 423 (509)
T smart00350 346 VLAAANPIGGRYDPKLTPEENIDLPAPILS--RFDLLFVVLDEVDEERDRELAKHVVDLHRYSHPEPDEADEVPISQEFL 423 (509)
T ss_pred EEEEeCCCCcccCCCcChhhccCCChHHhC--ceeeEEEecCCCChHHHHHHHHHHHHhhcccCccccccccccCCHHHH
Confidence 999999752 58999999 99986555 68999888888877543110 00
Q ss_pred ----------CCCCCC---HHHHH-----Hh----------CCCCCHHHHHHHHHHHHHHHHhcCCCcccHHHHHHHHHH
Q 007575 523 ----------LAKDID---LGDIA-----SM----------TTGFTGADLANLVNEAALLAGRLNKVVVEKIDFIHAVER 574 (597)
Q Consensus 523 ----------l~~dvd---l~~LA-----~~----------t~G~SgaDL~~Lv~eAal~A~r~~~~~It~~d~~~Al~~ 574 (597)
+.+.+. .+.|. .+ ..+.|++.+..+++-|...|..+.+..|+.+|+++|++-
T Consensus 424 ~~yi~~ar~~~~P~ls~~~~~~i~~~y~~~R~~~~~~~~~~~~~~t~R~l~sliRla~A~A~l~~r~~V~~~Dv~~ai~l 503 (509)
T smart00350 424 RKYIAYAREKIKPKLSEEAAEKLVKAYVDLRKEDSQSEARSSIPITVRQLESIIRLSEAHAKMRLSDVVEEADVEEAIRL 503 (509)
T ss_pred HHHHHHHHhcCCCCCCHHHHHHHHHHHHHhcccccccccccccCcCHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHH
Confidence 001111 11111 01 124588999999999999999999999999999999876
Q ss_pred Hh
Q 007575 575 SI 576 (597)
Q Consensus 575 v~ 576 (597)
+.
T Consensus 504 ~~ 505 (509)
T smart00350 504 LR 505 (509)
T ss_pred HH
Confidence 54
No 166
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=99.26 E-value=1.3e-10 Score=133.40 Aligned_cols=206 Identities=24% Similarity=0.326 Sum_probs=148.5
Q ss_pred CCcccccccCChHHHHHHHHHHHHhcChhHHhhcCCCCCCceEEeCCCCChHHHHHHHHHHhc----------CCCeeee
Q 007575 327 DTITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEA----------EVPFISC 396 (597)
Q Consensus 327 ~~vtf~dV~G~de~k~~L~eiv~~l~~p~~~~~lg~~~p~gVLL~GPPGTGKT~LArAIA~el----------~~pfi~i 396 (597)
..-.+|-|+|.++..+.+.+++. .+...+-+|+|+||+|||.++..+|.+. +..++++
T Consensus 165 r~gklDPvIGRd~EI~r~iqIL~------------RR~KNNPvLiGEpGVGKTAIvEGLA~rIv~g~VP~~L~~~~i~sL 232 (786)
T COG0542 165 REGKLDPVIGRDEEIRRTIQILS------------RRTKNNPVLVGEPGVGKTAIVEGLAQRIVNGDVPESLKDKRIYSL 232 (786)
T ss_pred hcCCCCCCcChHHHHHHHHHHHh------------ccCCCCCeEecCCCCCHHHHHHHHHHHHhcCCCCHHHcCCEEEEe
Confidence 45678889999998777766664 2334567999999999999999999864 5667888
Q ss_pred chhhhHH--HHhhcchHHHHHHHHHHHhcCCeEEEEcCcchhhhhcCCcccccchhHHHHHHHHHHHHhcCCCCCCcEEE
Q 007575 397 SASEFVE--LYVGMGASRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIV 474 (597)
Q Consensus 397 s~sef~~--~~vG~~e~~vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~eqtLnqLL~emdg~~~~~~VIV 474 (597)
+...++. +|.|+.+++++.++++.....+.||||||||.+.+..... + + .-..-|-|.-.+. ...+-+
T Consensus 233 D~g~LvAGakyRGeFEeRlk~vl~ev~~~~~vILFIDEiHtiVGAG~~~---G--~-a~DAaNiLKPaLA----RGeL~~ 302 (786)
T COG0542 233 DLGSLVAGAKYRGEFEERLKAVLKEVEKSKNVILFIDEIHTIVGAGATE---G--G-AMDAANLLKPALA----RGELRC 302 (786)
T ss_pred cHHHHhccccccCcHHHHHHHHHHHHhcCCCeEEEEechhhhcCCCccc---c--c-ccchhhhhHHHHh----cCCeEE
Confidence 8887764 6899999999999999998889999999999997654321 1 1 1123355554444 455788
Q ss_pred EEecCCCC-----CCChhhhCCCCcceEEEecCCCHHHHHHHHHHHHhcC----CCCCCCCCCHHHHHHhC-----CCCC
Q 007575 475 LGATNRSD-----VLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKK----ELPLAKDIDLGDIASMT-----TGFT 540 (597)
Q Consensus 475 IaaTNrpd-----~LD~aLlRpgRFd~~I~v~~Pd~~eR~eILk~~l~~~----~~~l~~dvdl~~LA~~t-----~G~S 540 (597)
|+||...+ .=|+||-| ||. .|.+..|+.++-..||+-.-.++ ++.+.++ .+...+..+ ..+-
T Consensus 303 IGATT~~EYRk~iEKD~AL~R--RFQ-~V~V~EPs~e~ti~ILrGlk~~yE~hH~V~i~D~-Al~aAv~LS~RYI~dR~L 378 (786)
T COG0542 303 IGATTLDEYRKYIEKDAALER--RFQ-KVLVDEPSVEDTIAILRGLKERYEAHHGVRITDE-ALVAAVTLSDRYIPDRFL 378 (786)
T ss_pred EEeccHHHHHHHhhhchHHHh--cCc-eeeCCCCCHHHHHHHHHHHHHHHHHccCceecHH-HHHHHHHHHHhhcccCCC
Confidence 98886542 34999999 997 89999999999999998765542 3333332 233333332 3455
Q ss_pred HHHHHHHHHHHHHHHHhc
Q 007575 541 GADLANLVNEAALLAGRL 558 (597)
Q Consensus 541 gaDL~~Lv~eAal~A~r~ 558 (597)
|.-...++++|+......
T Consensus 379 PDKAIDLiDeA~a~~~l~ 396 (786)
T COG0542 379 PDKAIDLLDEAGARVRLE 396 (786)
T ss_pred CchHHHHHHHHHHHHHhc
Confidence 566678888887765443
No 167
>PRK11608 pspF phage shock protein operon transcriptional activator; Provisional
Probab=99.26 E-value=3.8e-11 Score=127.24 Aligned_cols=193 Identities=23% Similarity=0.260 Sum_probs=124.0
Q ss_pred cccccCChHHHHHHHHHHHHhcChhHHhhcCCCCCCceEEeCCCCChHHHHHHHHHHhc---CCCeeeechhhhHHH---
Q 007575 331 FADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEA---EVPFISCSASEFVEL--- 404 (597)
Q Consensus 331 f~dV~G~de~k~~L~eiv~~l~~p~~~~~lg~~~p~gVLL~GPPGTGKT~LArAIA~el---~~pfi~is~sef~~~--- 404 (597)
+++++|.+...+.+.+.+..+. ..+.+|||+|++||||+++|++|.... +.||+.++|..+.+.
T Consensus 5 ~~~liG~S~~~~~~~~~i~~~a----------~~~~pVlI~GE~GtGK~~lA~~iH~~s~r~~~pfv~v~c~~~~~~~~~ 74 (326)
T PRK11608 5 KDNLLGEANSFLEVLEQVSRLA----------PLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCAALNENLLD 74 (326)
T ss_pred cCccEECCHHHHHHHHHHHHHh----------CCCCCEEEECCCCCcHHHHHHHHHHhCCccCCCeEEEeCCCCCHHHHH
Confidence 5689999998888887776543 234579999999999999999997654 579999999876321
Q ss_pred --Hhhcch-------HHHHHHHHHHHhcCCeEEEEcCcchhhhhcCCcccccchhHHHHHHHHHHHHhcCCC--C-----
Q 007575 405 --YVGMGA-------SRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFD--S----- 468 (597)
Q Consensus 405 --~vG~~e-------~~vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~eqtLnqLL~emdg~~--~----- 468 (597)
+.|... ......|+.|.. ..|||||||.|.... ...|+..++.-. .
T Consensus 75 ~~lfg~~~~~~~g~~~~~~g~l~~a~g---GtL~l~~i~~L~~~~---------------Q~~L~~~l~~~~~~~~g~~~ 136 (326)
T PRK11608 75 SELFGHEAGAFTGAQKRHPGRFERADG---GTLFLDELATAPMLV---------------QEKLLRVIEYGELERVGGSQ 136 (326)
T ss_pred HHHccccccccCCcccccCCchhccCC---CeEEeCChhhCCHHH---------------HHHHHHHHhcCcEEeCCCCc
Confidence 222110 111233444433 389999999987442 244555553211 1
Q ss_pred --CCcEEEEEecCCC-------CCCChhhhCCCCcceEEEecCCCHHHHHH----HHHHHHh----cCCCC----CCCCC
Q 007575 469 --NSAVIVLGATNRS-------DVLDPALRRPGRFDRVVMVETPDKIGREA----ILKVHVS----KKELP----LAKDI 527 (597)
Q Consensus 469 --~~~VIVIaaTNrp-------d~LD~aLlRpgRFd~~I~v~~Pd~~eR~e----ILk~~l~----~~~~~----l~~dv 527 (597)
...+.||++|+.. ..+.+.|.. ||. .+.+..|...+|.+ ++..++. +.+.+ +.++
T Consensus 137 ~~~~~~RiI~~s~~~l~~l~~~g~f~~dL~~--~l~-~~~i~lPpLReR~eDI~~L~~~fl~~~~~~~~~~~~~~~s~~- 212 (326)
T PRK11608 137 PLQVNVRLVCATNADLPAMVAEGKFRADLLD--RLA-FDVVQLPPLRERQSDIMLMAEHFAIQMCRELGLPLFPGFTER- 212 (326)
T ss_pred eeeccEEEEEeCchhHHHHHHcCCchHHHHH--hcC-CCEEECCChhhhhhhHHHHHHHHHHHHHHHhCCCCCCCCCHH-
Confidence 1357888888764 345566766 664 45667777777753 3444432 22222 2222
Q ss_pred CHHHHHHhCCCCCHHHHHHHHHHHHHHH
Q 007575 528 DLGDIASMTTGFTGADLANLVNEAALLA 555 (597)
Q Consensus 528 dl~~LA~~t~G~SgaDL~~Lv~eAal~A 555 (597)
.+..|..+.+.-+.++|++++++|+..+
T Consensus 213 al~~L~~y~WPGNvrEL~~vl~~a~~~~ 240 (326)
T PRK11608 213 ARETLLNYRWPGNIRELKNVVERSVYRH 240 (326)
T ss_pred HHHHHHhCCCCcHHHHHHHHHHHHHHhc
Confidence 2566666766667799999999998765
No 168
>PRK13531 regulatory ATPase RavA; Provisional
Probab=99.26 E-value=1.7e-10 Score=126.85 Aligned_cols=216 Identities=17% Similarity=0.142 Sum_probs=128.7
Q ss_pred cccCChHHHHHHHHHHHHhcChhHHhhcCCCCCCceEEeCCCCChHHHHHHHHHHhcCC--Ceeeechhh-hHHHHhhcc
Q 007575 333 DVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEV--PFISCSASE-FVELYVGMG 409 (597)
Q Consensus 333 dV~G~de~k~~L~eiv~~l~~p~~~~~lg~~~p~gVLL~GPPGTGKT~LArAIA~el~~--pfi~is~se-f~~~~vG~~ 409 (597)
.++|.+++.+.+..++. ...+|||+||||||||++|++++...+. +|....+.- ......|..
T Consensus 21 ~i~gre~vI~lll~aal--------------ag~hVLL~GpPGTGKT~LAraLa~~~~~~~~F~~~~~~fttp~DLfG~l 86 (498)
T PRK13531 21 GLYERSHAIRLCLLAAL--------------SGESVFLLGPPGIAKSLIARRLKFAFQNARAFEYLMTRFSTPEEVFGPL 86 (498)
T ss_pred hccCcHHHHHHHHHHHc--------------cCCCEEEECCCChhHHHHHHHHHHHhcccCcceeeeeeecCcHHhcCcH
Confidence 36777777655554432 2347999999999999999999987642 555443321 112222321
Q ss_pred -hHHH--HHHHHHHHhc---CCeEEEEcCcchhhhhcCCcccccchhHHHHHHHHHHHHhcCCC--------CCCcEEEE
Q 007575 410 -ASRV--RDLFARAKKE---APSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFD--------SNSAVIVL 475 (597)
Q Consensus 410 -e~~v--r~lF~~A~~~---aP~ILfIDEIDaL~~~r~~~~~~~~~~e~eqtLnqLL~emdg~~--------~~~~VIVI 475 (597)
-... ..-|.....+ ...+||+|||..+.+ .+.+.||..|+.-. .-...+++
T Consensus 87 ~i~~~~~~g~f~r~~~G~L~~A~lLfLDEI~rasp---------------~~QsaLLeam~Er~~t~g~~~~~lp~rfiv 151 (498)
T PRK13531 87 SIQALKDEGRYQRLTSGYLPEAEIVFLDEIWKAGP---------------AILNTLLTAINERRFRNGAHEEKIPMRLLV 151 (498)
T ss_pred HHhhhhhcCchhhhcCCccccccEEeecccccCCH---------------HHHHHHHHHHHhCeEecCCeEEeCCCcEEE
Confidence 0110 1123222222 234999999976543 45678888884321 11123444
Q ss_pred EecCCCC---CCChhhhCCCCcceEEEecCCC-HHHHHHHHHHHHhc--CCCCCCCCCC--------------------H
Q 007575 476 GATNRSD---VLDPALRRPGRFDRVVMVETPD-KIGREAILKVHVSK--KELPLAKDID--------------------L 529 (597)
Q Consensus 476 aaTNrpd---~LD~aLlRpgRFd~~I~v~~Pd-~~eR~eILk~~l~~--~~~~l~~dvd--------------------l 529 (597)
+|||... ...+++.. ||-..+.+++|+ .++..+++...... ...+..+-+. .
T Consensus 152 ~ATN~LPE~g~~leAL~D--RFliri~vp~l~~~~~e~~lL~~~~~~~~~~~~~~~vis~eel~~lq~~v~~V~v~d~v~ 229 (498)
T PRK13531 152 TASNELPEADSSLEALYD--RMLIRLWLDKVQDKANFRSMLTSQQDENDNPVPASLQITDEEYQQWQKEIGKITLPDHVF 229 (498)
T ss_pred EECCCCcccCCchHHhHh--hEEEEEECCCCCchHHHHHHHHcccccccCCCcccCCCCHHHHHHHHHHhcceeCCHHHH
Confidence 5556432 23458888 998889999996 46667788764321 1111111111 1
Q ss_pred H---HHHHh---C---CCCCHHHHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHhcccc
Q 007575 530 G---DIASM---T---TGFTGADLANLVNEAALLAGRLNKVVVEKIDFIHAVERSIAVSL 580 (597)
Q Consensus 530 ~---~LA~~---t---~G~SgaDL~~Lv~eAal~A~r~~~~~It~~d~~~Al~~v~~g~~ 580 (597)
+ .|... + ...|++--..+++-|...|...++..|+.+|+. .+..++....
T Consensus 230 eyI~~L~~~lr~~r~~~~~SpR~~~~l~~~akA~A~l~GR~~V~p~Dv~-ll~~vL~HRl 288 (498)
T PRK13531 230 ELIFQLRQQLDALPNAPYVSDRRWKKAIRLLQASAFFSGRDAIAPIDLI-LLKDCLWHDA 288 (498)
T ss_pred HHHHHHHHHHhcCCCCCCcCcHHHHHHHHHHHHHHHHCCCCCCCHHHHH-HhHHHhccCH
Confidence 2 22221 2 226888888899999999999999999999999 6666665543
No 169
>PRK05022 anaerobic nitric oxide reductase transcription regulator; Provisional
Probab=99.25 E-value=4.3e-11 Score=134.00 Aligned_cols=208 Identities=22% Similarity=0.288 Sum_probs=133.1
Q ss_pred ccccccCChHHHHHHHHHHHHhcChhHHhhcCCCCCCceEEeCCCCChHHHHHHHHHHhc---CCCeeeechhhhHHH--
Q 007575 330 TFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEA---EVPFISCSASEFVEL-- 404 (597)
Q Consensus 330 tf~dV~G~de~k~~L~eiv~~l~~p~~~~~lg~~~p~gVLL~GPPGTGKT~LArAIA~el---~~pfi~is~sef~~~-- 404 (597)
++.+++|.....+.+.+.+..+.. .+.+|||+|++||||+++|++|.... +.||+.++|..+.+.
T Consensus 185 ~~~~iig~s~~~~~~~~~i~~~a~----------~~~pVlI~Ge~GtGK~~~A~~ih~~s~r~~~p~v~v~c~~~~~~~~ 254 (509)
T PRK05022 185 KEGEMIGQSPAMQQLKKEIEVVAA----------SDLNVLILGETGVGKELVARAIHAASPRADKPLVYLNCAALPESLA 254 (509)
T ss_pred cCCceeecCHHHHHHHHHHHHHhC----------CCCcEEEECCCCccHHHHHHHHHHhCCcCCCCeEEEEcccCChHHH
Confidence 578899999998888888876432 34579999999999999999998764 689999999876432
Q ss_pred ---Hhhcch-------HHHHHHHHHHHhcCCeEEEEcCcchhhhhcCCcccccchhHHHHHHHHHHHHhcCCC-------
Q 007575 405 ---YVGMGA-------SRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFD------- 467 (597)
Q Consensus 405 ---~vG~~e-------~~vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~eqtLnqLL~emdg~~------- 467 (597)
..|... ......|+.|.. ..|||||||.|.... ...|+..++.-.
T Consensus 255 e~~lfG~~~g~~~ga~~~~~g~~~~a~g---GtL~ldeI~~L~~~~---------------Q~~Ll~~l~~~~~~~~g~~ 316 (509)
T PRK05022 255 ESELFGHVKGAFTGAISNRSGKFELADG---GTLFLDEIGELPLAL---------------QAKLLRVLQYGEIQRVGSD 316 (509)
T ss_pred HHHhcCccccccCCCcccCCcchhhcCC---CEEEecChhhCCHHH---------------HHHHHHHHhcCCEeeCCCC
Confidence 122110 011123555443 389999999997443 244555543211
Q ss_pred --CCCcEEEEEecCCC-------CCCChhhhCCCCcceEEEecCCCHHHHHH----HHHHHHhc----CC---CCCCCCC
Q 007575 468 --SNSAVIVLGATNRS-------DVLDPALRRPGRFDRVVMVETPDKIGREA----ILKVHVSK----KE---LPLAKDI 527 (597)
Q Consensus 468 --~~~~VIVIaaTNrp-------d~LD~aLlRpgRFd~~I~v~~Pd~~eR~e----ILk~~l~~----~~---~~l~~dv 527 (597)
....+-||++|+.. ..+.+.|.. |+. .+.+..|...+|.+ +++.++.+ .+ ..+.++
T Consensus 317 ~~~~~~~RiI~~t~~~l~~~~~~~~f~~dL~~--rl~-~~~i~lPpLreR~eDI~~L~~~fl~~~~~~~~~~~~~~s~~- 392 (509)
T PRK05022 317 RSLRVDVRVIAATNRDLREEVRAGRFRADLYH--RLS-VFPLSVPPLRERGDDVLLLAGYFLEQNRARLGLRSLRLSPA- 392 (509)
T ss_pred cceecceEEEEecCCCHHHHHHcCCccHHHHh--ccc-ccEeeCCCchhchhhHHHHHHHHHHHHHHHcCCCCCCCCHH-
Confidence 12357889999875 224444444 443 56677888877753 23333322 11 223333
Q ss_pred CHHHHHHhCCCCCHHHHHHHHHHHHHHHHhcCC---CcccHHHHH
Q 007575 528 DLGDIASMTTGFTGADLANLVNEAALLAGRLNK---VVVEKIDFI 569 (597)
Q Consensus 528 dl~~LA~~t~G~SgaDL~~Lv~eAal~A~r~~~---~~It~~d~~ 569 (597)
.+..|..+.+..+.++|++++++|+..|..... ..|+.+++.
T Consensus 393 a~~~L~~y~WPGNvrEL~~~i~ra~~~~~~~~~~~~~~i~~~~l~ 437 (509)
T PRK05022 393 AQAALLAYDWPGNVRELEHVISRAALLARARGAGRIVTLEAQHLD 437 (509)
T ss_pred HHHHHHhCCCCCcHHHHHHHHHHHHHhcCCCccCccceecHHHcC
Confidence 366677777767889999999999988743211 145666654
No 170
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=99.25 E-value=4.9e-10 Score=114.17 Aligned_cols=192 Identities=14% Similarity=0.189 Sum_probs=119.6
Q ss_pred CceEEeCCCCChHHHHHHHHHHhcCC-Ceee---e----chhhhHHH---Hhhcch---------HHHHHHH-HHHHhcC
Q 007575 366 RGVLLVGLPGTGKTLLAKAVAGEAEV-PFIS---C----SASEFVEL---YVGMGA---------SRVRDLF-ARAKKEA 424 (597)
Q Consensus 366 ~gVLL~GPPGTGKT~LArAIA~el~~-pfi~---i----s~sef~~~---~vG~~e---------~~vr~lF-~~A~~~a 424 (597)
..++|+||+|+|||++++.+++++.. .+.. + +..++... ..|... ..+.+.+ .......
T Consensus 44 ~~~~l~G~~G~GKTtl~~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~i~~~lG~~~~~~~~~~~~~~l~~~l~~~~~~~~ 123 (269)
T TIGR03015 44 GFILITGEVGAGKTTLIRNLLKRLDQERVVAAKLVNTRVDAEDLLRMVAADFGLETEGRDKAALLRELEDFLIEQFAAGK 123 (269)
T ss_pred CEEEEEcCCCCCHHHHHHHHHHhcCCCCeEEeeeeCCCCCHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHHHHhCCC
Confidence 35889999999999999999998752 2211 1 11222211 112111 1122222 2233566
Q ss_pred CeEEEEcCcchhhhhcCCcccccchhHHHHHHHHHHHHhcCCCCCCcEEEEEecCC--CCCC----ChhhhCCCCcceEE
Q 007575 425 PSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATNR--SDVL----DPALRRPGRFDRVV 498 (597)
Q Consensus 425 P~ILfIDEIDaL~~~r~~~~~~~~~~e~eqtLnqLL~emdg~~~~~~VIVIaaTNr--pd~L----D~aLlRpgRFd~~I 498 (597)
+++|+|||+|.+.... ...+..+..... .....+.|+.+... .+.+ ...+.+ |+...+
T Consensus 124 ~~vliiDe~~~l~~~~------------~~~l~~l~~~~~--~~~~~~~vvl~g~~~~~~~l~~~~~~~l~~--r~~~~~ 187 (269)
T TIGR03015 124 RALLVVDEAQNLTPEL------------LEELRMLSNFQT--DNAKLLQIFLVGQPEFRETLQSPQLQQLRQ--RIIASC 187 (269)
T ss_pred CeEEEEECcccCCHHH------------HHHHHHHhCccc--CCCCeEEEEEcCCHHHHHHHcCchhHHHHh--heeeee
Confidence 7899999999874221 112222222111 11222333333221 1122 123545 777788
Q ss_pred EecCCCHHHHHHHHHHHHhcCCC----CCCCCCCHHHHHHhCCCCCHHHHHHHHHHHHHHHHhcCCCcccHHHHHHHHHH
Q 007575 499 MVETPDKIGREAILKVHVSKKEL----PLAKDIDLGDIASMTTGFTGADLANLVNEAALLAGRLNKVVVEKIDFIHAVER 574 (597)
Q Consensus 499 ~v~~Pd~~eR~eILk~~l~~~~~----~l~~dvdl~~LA~~t~G~SgaDL~~Lv~eAal~A~r~~~~~It~~d~~~Al~~ 574 (597)
.+++.+.++..+++...+...+. .+.++ .++.|++.+.|. ++.|..+++.|...|..++...|+.+++++++..
T Consensus 188 ~l~~l~~~e~~~~l~~~l~~~g~~~~~~~~~~-~~~~i~~~s~G~-p~~i~~l~~~~~~~a~~~~~~~i~~~~v~~~~~~ 265 (269)
T TIGR03015 188 HLGPLDREETREYIEHRLERAGNRDAPVFSEG-AFDAIHRFSRGI-PRLINILCDRLLLSAFLEEKREIGGEEVREVIAE 265 (269)
T ss_pred eCCCCCHHHHHHHHHHHHHHcCCCCCCCcCHH-HHHHHHHHcCCc-ccHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHH
Confidence 99999999999999988875432 33333 578889999886 5679999999999999999999999999999887
Q ss_pred H
Q 007575 575 S 575 (597)
Q Consensus 575 v 575 (597)
.
T Consensus 266 ~ 266 (269)
T TIGR03015 266 I 266 (269)
T ss_pred h
Confidence 4
No 171
>PRK11388 DNA-binding transcriptional regulator DhaR; Provisional
Probab=99.25 E-value=2.6e-11 Score=139.12 Aligned_cols=210 Identities=18% Similarity=0.234 Sum_probs=132.8
Q ss_pred CcccccccCChHHHHHHHHHHHHhcChhHHhhcCCCCCCceEEeCCCCChHHHHHHHHHHhc---CCCeeeechhhhHH-
Q 007575 328 TITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEA---EVPFISCSASEFVE- 403 (597)
Q Consensus 328 ~vtf~dV~G~de~k~~L~eiv~~l~~p~~~~~lg~~~p~gVLL~GPPGTGKT~LArAIA~el---~~pfi~is~sef~~- 403 (597)
..+|++++|.+...+++.+.+..+.. ....|||+|++||||+++|++|.... +.||+.++|..+..
T Consensus 321 ~~~~~~l~g~s~~~~~~~~~~~~~a~----------~~~pvli~Ge~GtGK~~~A~~ih~~s~r~~~pfv~vnc~~~~~~ 390 (638)
T PRK11388 321 SHTFDHMPQDSPQMRRLIHFGRQAAK----------SSFPVLLCGEEGVGKALLAQAIHNESERAAGPYIAVNCQLYPDE 390 (638)
T ss_pred cccccceEECCHHHHHHHHHHHHHhC----------cCCCEEEECCCCcCHHHHHHHHHHhCCccCCCeEEEECCCCChH
Confidence 45799999999987777776664322 23469999999999999999998764 57999999986532
Q ss_pred ----HHhhcc----hHHHHHHHHHHHhcCCeEEEEcCcchhhhhcCCcccccchhHHHHHHHHHHHHhcCCC-----C--
Q 007575 404 ----LYVGMG----ASRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFD-----S-- 468 (597)
Q Consensus 404 ----~~vG~~----e~~vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~eqtLnqLL~emdg~~-----~-- 468 (597)
.+.|.. .......|+.|. ..+||||||+.|....+ ..|+..++.-. +
T Consensus 391 ~~~~elfg~~~~~~~~~~~g~~~~a~---~GtL~ldei~~l~~~~Q---------------~~Ll~~l~~~~~~~~~~~~ 452 (638)
T PRK11388 391 ALAEEFLGSDRTDSENGRLSKFELAH---GGTLFLEKVEYLSPELQ---------------SALLQVLKTGVITRLDSRR 452 (638)
T ss_pred HHHHHhcCCCCcCccCCCCCceeECC---CCEEEEcChhhCCHHHH---------------HHHHHHHhcCcEEeCCCCc
Confidence 222311 000111344333 34999999999875432 44555544211 1
Q ss_pred --CCcEEEEEecCCCC-------CCChhhhCCCCcceEEEecCCCHHHHHH----HHHHHHhc----C--CCCCCCCCCH
Q 007575 469 --NSAVIVLGATNRSD-------VLDPALRRPGRFDRVVMVETPDKIGREA----ILKVHVSK----K--ELPLAKDIDL 529 (597)
Q Consensus 469 --~~~VIVIaaTNrpd-------~LD~aLlRpgRFd~~I~v~~Pd~~eR~e----ILk~~l~~----~--~~~l~~dvdl 529 (597)
+..+.||++|+..- .+.+.|.- |+. .+.+..|...+|.+ ++..++.+ . ...+.++ .+
T Consensus 453 ~~~~~~riI~~t~~~l~~~~~~~~f~~dL~~--~l~-~~~i~lPpLreR~~Di~~L~~~~l~~~~~~~~~~~~~s~~-a~ 528 (638)
T PRK11388 453 LIPVDVRVIATTTADLAMLVEQNRFSRQLYY--ALH-AFEITIPPLRMRREDIPALVNNKLRSLEKRFSTRLKIDDD-AL 528 (638)
T ss_pred eEEeeEEEEEeccCCHHHHHhcCCChHHHhh--hhc-eeEEeCCChhhhhhHHHHHHHHHHHHHHHHhCCCCCcCHH-HH
Confidence 12577899988641 22233322 332 56777888888853 33344332 1 1223333 36
Q ss_pred HHHHHhCCCCCHHHHHHHHHHHHHHHHhcCCCcccHHHHHHHH
Q 007575 530 GDIASMTTGFTGADLANLVNEAALLAGRLNKVVVEKIDFIHAV 572 (597)
Q Consensus 530 ~~LA~~t~G~SgaDL~~Lv~eAal~A~r~~~~~It~~d~~~Al 572 (597)
+.|..+.+.-+.++|.++++.|+..+ ....|+.+|+...+
T Consensus 529 ~~L~~y~WPGNvreL~~~l~~~~~~~---~~~~i~~~~lp~~~ 568 (638)
T PRK11388 529 ARLVSYRWPGNDFELRSVIENLALSS---DNGRIRLSDLPEHL 568 (638)
T ss_pred HHHHcCCCCChHHHHHHHHHHHHHhC---CCCeecHHHCchhh
Confidence 66777776667899999999988764 44578888887665
No 172
>TIGR02974 phageshock_pspF psp operon transcriptional activator PspF. Members of this protein family are PspF, the sigma-54-dependent transcriptional activator of the phage shock protein (psp) operon, in Escherichia coli and numerous other species. The psp operon is induced by a number of stress conditions, including heat shock, ethanol, and filamentous phage infection. Changed com_name to adhere to TIGR role notes conventions. 09/15/06 - DMH
Probab=99.25 E-value=4.4e-11 Score=126.95 Aligned_cols=190 Identities=22% Similarity=0.249 Sum_probs=119.7
Q ss_pred ccCChHHHHHHHHHHHHhcChhHHhhcCCCCCCceEEeCCCCChHHHHHHHHHHhc---CCCeeeechhhhHHH-----H
Q 007575 334 VAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEA---EVPFISCSASEFVEL-----Y 405 (597)
Q Consensus 334 V~G~de~k~~L~eiv~~l~~p~~~~~lg~~~p~gVLL~GPPGTGKT~LArAIA~el---~~pfi~is~sef~~~-----~ 405 (597)
++|...+.+.+.+.+..+.. ...+|||+|++||||+++|++|.... +.||+.++|..+.+. .
T Consensus 1 liG~S~~m~~~~~~~~~~a~----------~~~pVLI~GE~GtGK~~lAr~iH~~s~r~~~pfv~vnc~~~~~~~l~~~l 70 (329)
T TIGR02974 1 LIGESNAFLEVLEQVSRLAP----------LDRPVLIIGERGTGKELIAARLHYLSKRWQGPLVKLNCAALSENLLDSEL 70 (329)
T ss_pred CCcCCHHHHHHHHHHHHHhC----------CCCCEEEECCCCChHHHHHHHHHHhcCccCCCeEEEeCCCCChHHHHHHH
Confidence 46777777776666665432 34579999999999999999997654 579999999865322 1
Q ss_pred hhcch-------HHHHHHHHHHHhcCCeEEEEcCcchhhhhcCCcccccchhHHHHHHHHHHHHhcCCC---------CC
Q 007575 406 VGMGA-------SRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFD---------SN 469 (597)
Q Consensus 406 vG~~e-------~~vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~eqtLnqLL~emdg~~---------~~ 469 (597)
.|... .....+|+.|.. .+|||||||.|....+ ..|+..++.-. ..
T Consensus 71 fG~~~g~~~ga~~~~~G~~~~a~g---GtL~Ldei~~L~~~~Q---------------~~Ll~~l~~~~~~~~g~~~~~~ 132 (329)
T TIGR02974 71 FGHEAGAFTGAQKRHQGRFERADG---GTLFLDELATASLLVQ---------------EKLLRVIEYGEFERVGGSQTLQ 132 (329)
T ss_pred hccccccccCcccccCCchhhCCC---CEEEeCChHhCCHHHH---------------HHHHHHHHcCcEEecCCCceec
Confidence 12110 111233555543 4999999999864432 44555553211 12
Q ss_pred CcEEEEEecCCC-------CCCChhhhCCCCcceEEEecCCCHHHHHH----HHHHHHh----cCCC----CCCCCCCHH
Q 007575 470 SAVIVLGATNRS-------DVLDPALRRPGRFDRVVMVETPDKIGREA----ILKVHVS----KKEL----PLAKDIDLG 530 (597)
Q Consensus 470 ~~VIVIaaTNrp-------d~LD~aLlRpgRFd~~I~v~~Pd~~eR~e----ILk~~l~----~~~~----~l~~dvdl~ 530 (597)
..+.||++|+.. ..+.+.|.. |+. .+.+..|...+|.+ ++..++. +.+. .+.++ .++
T Consensus 133 ~~~RiI~at~~~l~~~~~~g~fr~dL~~--rl~-~~~i~lPpLReR~eDI~~L~~~fl~~~~~~~~~~~~~~ls~~-a~~ 208 (329)
T TIGR02974 133 VDVRLVCATNADLPALAAEGRFRADLLD--RLA-FDVITLPPLRERQEDIMLLAEHFAIRMARELGLPLFPGFTPQ-ARE 208 (329)
T ss_pred cceEEEEechhhHHHHhhcCchHHHHHH--Hhc-chhcCCCchhhhhhhHHHHHHHHHHHHHHHhCCCCCCCcCHH-HHH
Confidence 457888888764 234456655 664 46777788777753 3333332 2222 23333 366
Q ss_pred HHHHhCCCCCHHHHHHHHHHHHHHH
Q 007575 531 DIASMTTGFTGADLANLVNEAALLA 555 (597)
Q Consensus 531 ~LA~~t~G~SgaDL~~Lv~eAal~A 555 (597)
.|..+.+.-+.++|.+++.+|+..+
T Consensus 209 ~L~~y~WPGNvrEL~n~i~~~~~~~ 233 (329)
T TIGR02974 209 QLLEYHWPGNVRELKNVVERSVYRH 233 (329)
T ss_pred HHHhCCCCchHHHHHHHHHHHHHhC
Confidence 6777776667899999999988876
No 173
>COG2607 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=99.24 E-value=4.9e-10 Score=112.30 Aligned_cols=196 Identities=23% Similarity=0.335 Sum_probs=139.8
Q ss_pred CCCCcccccccCChHHHHHHHHHHHHhcChhHHhhcCCCCCCceEEeCCCCChHHHHHHHHHHhc---CCCeeeechhhh
Q 007575 325 QGDTITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEA---EVPFISCSASEF 401 (597)
Q Consensus 325 ~~~~vtf~dV~G~de~k~~L~eiv~~l~~p~~~~~lg~~~p~gVLL~GPPGTGKT~LArAIA~el---~~pfi~is~sef 401 (597)
..+.+.+.+++|.+.+++.|.+-...+-. ..+..+|||+|..||||++|+||+.++. +..++.|+-.++
T Consensus 53 ~~~~i~L~~l~Gvd~qk~~L~~NT~~F~~--------G~pANnVLLwGaRGtGKSSLVKA~~~e~~~~glrLVEV~k~dl 124 (287)
T COG2607 53 DPDPIDLADLVGVDRQKEALVRNTEQFAE--------GLPANNVLLWGARGTGKSSLVKALLNEYADEGLRLVEVDKEDL 124 (287)
T ss_pred CCCCcCHHHHhCchHHHHHHHHHHHHHHc--------CCcccceEEecCCCCChHHHHHHHHHHHHhcCCeEEEEcHHHH
Confidence 34568999999999999998876655332 3466789999999999999999998876 677899988877
Q ss_pred HHHHhhcchHHHHHHHHHHHhc-CCeEEEEcCcchhhhhcCCcccccchhHHHHHHHHHHHHhcCCC--CCCcEEEEEec
Q 007575 402 VELYVGMGASRVRDLFARAKKE-APSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFD--SNSAVIVLGAT 478 (597)
Q Consensus 402 ~~~~vG~~e~~vr~lF~~A~~~-aP~ILfIDEIDaL~~~r~~~~~~~~~~e~eqtLnqLL~emdg~~--~~~~VIVIaaT 478 (597)
.. +-++++..+.. ..-|||+|++-- ++-+.....|...|||-- .+.+|++.||+
T Consensus 125 ~~---------Lp~l~~~Lr~~~~kFIlFcDDLSF--------------e~gd~~yK~LKs~LeG~ve~rP~NVl~YATS 181 (287)
T COG2607 125 AT---------LPDLVELLRARPEKFILFCDDLSF--------------EEGDDAYKALKSALEGGVEGRPANVLFYATS 181 (287)
T ss_pred hh---------HHHHHHHHhcCCceEEEEecCCCC--------------CCCchHHHHHHHHhcCCcccCCCeEEEEEec
Confidence 43 45666666643 345999998721 111234466777787643 25789999999
Q ss_pred CCCCCCChh--------------------hhCCCCcceEEEecCCCHHHHHHHHHHHHhcCCCCCCCC-CCHHHH--HHh
Q 007575 479 NRSDVLDPA--------------------LRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKD-IDLGDI--ASM 535 (597)
Q Consensus 479 Nrpd~LD~a--------------------LlRpgRFd~~I~v~~Pd~~eR~eILk~~l~~~~~~l~~d-vdl~~L--A~~ 535 (597)
||-+.|++. +.-..||...+.|.+++.++...|+..++++.+++..++ .+.+.+ |..
T Consensus 182 NRRHLl~e~~~dn~~~~~eih~~eaveEKlSlSDRFGLwL~F~~~~Q~~YL~~V~~~a~~~~l~~~~e~l~~eAl~WAt~ 261 (287)
T COG2607 182 NRRHLLPEDMKDNEGSTGEIHPSEAVEEKLSLSDRFGLWLSFYPCDQDEYLKIVDHYAKHFGLDISDEELHAEALQWATT 261 (287)
T ss_pred CCcccccHhhhhCCCcccccChhHHHHHhhchhhhcceeecccCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHh
Confidence 996544321 222359999999999999999999999998877766532 222222 334
Q ss_pred CCCCCHHHHHHHHHHH
Q 007575 536 TTGFTGADLANLVNEA 551 (597)
Q Consensus 536 t~G~SgaDL~~Lv~eA 551 (597)
-.|-||+-..+.++..
T Consensus 262 rg~RSGR~A~QF~~~~ 277 (287)
T COG2607 262 RGGRSGRVAWQFIRDL 277 (287)
T ss_pred cCCCccHhHHHHHHHH
Confidence 4567777766666643
No 174
>TIGR01650 PD_CobS cobaltochelatase, CobS subunit. This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobS gene product, which is a cobalt chelatase subunit, with a MW ~37 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobT (TIGR01651) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobS gene product, the P. denitrificans gene symbol is not used in the name of this model.
Probab=99.24 E-value=3.3e-11 Score=127.00 Aligned_cols=137 Identities=19% Similarity=0.234 Sum_probs=97.3
Q ss_pred CCceEEeCCCCChHHHHHHHHHHhcCCCeeeechhhhHHH--HhhcchHH----------HHHHHHHHHhcCCeEEEEcC
Q 007575 365 PRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFVEL--YVGMGASR----------VRDLFARAKKEAPSIIFIDE 432 (597)
Q Consensus 365 p~gVLL~GPPGTGKT~LArAIA~el~~pfi~is~sef~~~--~vG~~e~~----------vr~lF~~A~~~aP~ILfIDE 432 (597)
.++|||.||||||||++|+++|.+++.|++.++++..... ++|...-. ....+..|.. .+++|++||
T Consensus 64 ~~~ilL~G~pGtGKTtla~~lA~~l~~~~~rV~~~~~l~~~DliG~~~~~l~~g~~~~~f~~GpL~~A~~-~g~illlDE 142 (327)
T TIGR01650 64 DRRVMVQGYHGTGKSTHIEQIAARLNWPCVRVNLDSHVSRIDLVGKDAIVLKDGKQITEFRDGILPWALQ-HNVALCFDE 142 (327)
T ss_pred CCcEEEEeCCCChHHHHHHHHHHHHCCCeEEEEecCCCChhhcCCCceeeccCCcceeEEecCcchhHHh-CCeEEEech
Confidence 3579999999999999999999999999999988765544 34432111 1122333433 467899999
Q ss_pred cchhhhhcCCcccccchhHHHHHHHHHHHH-----hc----CCCCCCcEEEEEecCCCC------------CCChhhhCC
Q 007575 433 IDAVAKSRDGRFRIVSNDEREQTLNQLLTE-----MD----GFDSNSAVIVLGATNRSD------------VLDPALRRP 491 (597)
Q Consensus 433 IDaL~~~r~~~~~~~~~~e~eqtLnqLL~e-----md----g~~~~~~VIVIaaTNrpd------------~LD~aLlRp 491 (597)
||...+.- ...++.+|.. +. .+.....+.||||.|..+ .++++++.
T Consensus 143 in~a~p~~------------~~~L~~lLE~~~~l~i~~~~~~i~~hp~FrviAT~Np~g~Gd~~G~y~Gt~~l~~A~lD- 209 (327)
T TIGR01650 143 YDAGRPDV------------MFVIQRVLEAGGKLTLLDQNRVIRAHPAFRLFATANTIGLGDTTGLYHGTQQINQAQMD- 209 (327)
T ss_pred hhccCHHH------------HHHHHHHhccCCeEEECCCceEecCCCCeEEEEeeCCCCcCCCCcceeeeecCCHHHHh-
Confidence 99874321 2234445442 11 112345788999999854 46899999
Q ss_pred CCcceEEEecCCCHHHHHHHHHHHH
Q 007575 492 GRFDRVVMVETPDKIGREAILKVHV 516 (597)
Q Consensus 492 gRFd~~I~v~~Pd~~eR~eILk~~l 516 (597)
||-.++.++.|+.++-.+|+....
T Consensus 210 -RF~i~~~~~Yp~~e~E~~Il~~~~ 233 (327)
T TIGR01650 210 -RWSIVTTLNYLEHDNEAAIVLAKA 233 (327)
T ss_pred -heeeEeeCCCCCHHHHHHHHHhhc
Confidence 998788999999999999998764
No 175
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=99.23 E-value=1.2e-10 Score=122.37 Aligned_cols=174 Identities=16% Similarity=0.284 Sum_probs=118.3
Q ss_pred cccccccCChHHHHHHHHHHHHhcChhHHhhcCCCCCCceEEeCCCCChHHHHHHHHHHhcCCCeeeechhhhHHHH--h
Q 007575 329 ITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFVELY--V 406 (597)
Q Consensus 329 vtf~dV~G~de~k~~L~eiv~~l~~p~~~~~lg~~~p~gVLL~GPPGTGKT~LArAIA~el~~pfi~is~sef~~~~--v 406 (597)
++|++|+|++.+++.|...+. ..+.|..+||+||+|+|||++|+++|..+.+....-+.+++.... .
T Consensus 1 m~~~~i~g~~~~~~~l~~~~~-----------~~~~~ha~Lf~G~~G~Gk~~la~~~a~~l~c~~~~~~h~D~~~~~~~~ 69 (313)
T PRK05564 1 MSFHTIIGHENIKNRIKNSII-----------KNRFSHAHIIVGEDGIGKSLLAKEIALKILGKSQQREYVDIIEFKPIN 69 (313)
T ss_pred CChhhccCcHHHHHHHHHHHH-----------cCCCCceEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCeEEecccc
Confidence 469999999999999888874 235567789999999999999999999763321110111110000 1
Q ss_pred h--cchHHHHHHHHHHHh----cCCeEEEEcCcchhhhhcCCcccccchhHHHHHHHHHHHHhcCCCCCCcEEEEEecCC
Q 007575 407 G--MGASRVRDLFARAKK----EAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATNR 480 (597)
Q Consensus 407 G--~~e~~vr~lF~~A~~----~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~eqtLnqLL~emdg~~~~~~VIVIaaTNr 480 (597)
| .+...++++.+.+.. ....|++|||+|.+.. ...|.||..++. ++.++++|.+|+.
T Consensus 70 ~~~i~v~~ir~~~~~~~~~p~~~~~kv~iI~~ad~m~~---------------~a~naLLK~LEe--pp~~t~~il~~~~ 132 (313)
T PRK05564 70 KKSIGVDDIRNIIEEVNKKPYEGDKKVIIIYNSEKMTE---------------QAQNAFLKTIEE--PPKGVFIILLCEN 132 (313)
T ss_pred CCCCCHHHHHHHHHHHhcCcccCCceEEEEechhhcCH---------------HHHHHHHHHhcC--CCCCeEEEEEeCC
Confidence 1 133457777665432 3346999999998853 345889999985 4455666666677
Q ss_pred CCCCChhhhCCCCcceEEEecCCCHHHHHHHHHHHHhcCCCCCCCCCCHHHHHHhCCC
Q 007575 481 SDVLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTTG 538 (597)
Q Consensus 481 pd~LD~aLlRpgRFd~~I~v~~Pd~~eR~eILk~~l~~~~~~l~~dvdl~~LA~~t~G 538 (597)
++.+.+.+++ |.. .+.+.+|+.++....+...+. ... +..++.++..+.|
T Consensus 133 ~~~ll~TI~S--Rc~-~~~~~~~~~~~~~~~l~~~~~----~~~-~~~~~~l~~~~~g 182 (313)
T PRK05564 133 LEQILDTIKS--RCQ-IYKLNRLSKEEIEKFISYKYN----DIK-EEEKKSAIAFSDG 182 (313)
T ss_pred hHhCcHHHHh--hce-eeeCCCcCHHHHHHHHHHHhc----CCC-HHHHHHHHHHcCC
Confidence 8999999988 764 899999999988888876542 111 1235566666665
No 176
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=99.23 E-value=3e-11 Score=107.16 Aligned_cols=126 Identities=33% Similarity=0.448 Sum_probs=83.2
Q ss_pred CCceEEeCCCCChHHHHHHHHHHhcCCC---eeeechhhhHHH--------------HhhcchHHHHHHHHHHHhcCCeE
Q 007575 365 PRGVLLVGLPGTGKTLLAKAVAGEAEVP---FISCSASEFVEL--------------YVGMGASRVRDLFARAKKEAPSI 427 (597)
Q Consensus 365 p~gVLL~GPPGTGKT~LArAIA~el~~p---fi~is~sef~~~--------------~vG~~e~~vr~lF~~A~~~aP~I 427 (597)
+..++|+||||||||++++++|..+..+ ++.++++..... .........+.++..+....|++
T Consensus 2 ~~~~~l~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 81 (148)
T smart00382 2 GEVILIVGPPGSGKTTLARALARELGPPGGGVIYIDGEDILEEVLDQLLLIIVGGKKASGSGELRLRLALALARKLKPDV 81 (148)
T ss_pred CCEEEEECCCCCcHHHHHHHHHhccCCCCCCEEEECCEEccccCHHHHHhhhhhccCCCCCHHHHHHHHHHHHHhcCCCE
Confidence 4579999999999999999999998765 888887754322 12334566778888888887899
Q ss_pred EEEcCcchhhhhcCCcccccchhHHHHHHHHH--HHHhcCCCCCCcEEEEEecCCC-CCCChhhhCCCCcceEEEecCC
Q 007575 428 IFIDEIDAVAKSRDGRFRIVSNDEREQTLNQL--LTEMDGFDSNSAVIVLGATNRS-DVLDPALRRPGRFDRVVMVETP 503 (597)
Q Consensus 428 LfIDEIDaL~~~r~~~~~~~~~~e~eqtLnqL--L~emdg~~~~~~VIVIaaTNrp-d~LD~aLlRpgRFd~~I~v~~P 503 (597)
|+|||++.+....... ..... ..............+|+++|.. ...+..+.+ |++.++.+..+
T Consensus 82 iiiDei~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~--~~~~~~~~~~~ 147 (148)
T smart00382 82 LILDEITSLLDAEQEA-----------LLLLLEELRLLLLLKSEKNLTVILTTNDEKDLGPALLRR--RFDRRIVLLLI 147 (148)
T ss_pred EEEECCcccCCHHHHH-----------HHHhhhhhHHHHHHHhcCCCEEEEEeCCCccCchhhhhh--ccceEEEecCC
Confidence 9999999987543210 00000 0000111224457788888863 334444444 88888887654
No 177
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=99.21 E-value=2.3e-10 Score=120.81 Aligned_cols=184 Identities=15% Similarity=0.209 Sum_probs=125.7
Q ss_pred ccccccCChHHHHHHHHHHHHhcChhHHhhcCCCCCCceEEeCCCCChHHHHHHHHHHhcCCCe----------eeechh
Q 007575 330 TFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPF----------ISCSAS 399 (597)
Q Consensus 330 tf~dV~G~de~k~~L~eiv~~l~~p~~~~~lg~~~p~gVLL~GPPGTGKT~LArAIA~el~~pf----------i~is~s 399 (597)
.|++|+|++++++.|...+.. .+.|..+||+||+|+||+++|.++|..+-+.- ...+.+
T Consensus 2 ~f~~iiGq~~~~~~L~~~i~~-----------~rl~ha~Lf~G~~G~Gk~~~A~~~a~~llc~~~c~~c~~~~~~~~~hP 70 (314)
T PRK07399 2 LFANLIGQPLAIELLTAAIKQ-----------NRIAPAYLFAGPEGVGRKLAALCFIEGLLSQGSPSKNIRRRLEEGNHP 70 (314)
T ss_pred cHHHhCCHHHHHHHHHHHHHh-----------CCCCceEEEECCCCCCHHHHHHHHHHHHcCCCCCCCcHhcccccCCCC
Confidence 589999999999999999863 34567899999999999999999998763221 011111
Q ss_pred hhHH---------H--------Hhh--------cchHHHHHHHHHHHh----cCCeEEEEcCcchhhhhcCCcccccchh
Q 007575 400 EFVE---------L--------YVG--------MGASRVRDLFARAKK----EAPSIIFIDEIDAVAKSRDGRFRIVSND 450 (597)
Q Consensus 400 ef~~---------~--------~vG--------~~e~~vr~lF~~A~~----~aP~ILfIDEIDaL~~~r~~~~~~~~~~ 450 (597)
|+.- . ..| -....+|++.+.+.. ....|++||++|.+..
T Consensus 71 Dl~~i~p~~~~~g~~~~~~~~~~~~~~~~~~~~I~id~ir~i~~~l~~~p~~~~~kVvII~~ae~m~~------------ 138 (314)
T PRK07399 71 DLLWVEPTYQHQGKLITASEAEEAGLKRKAPPQIRLEQIREIKRFLSRPPLEAPRKVVVIEDAETMNE------------ 138 (314)
T ss_pred CEEEEeccccccccccchhhhhhccccccccccCcHHHHHHHHHHHccCcccCCceEEEEEchhhcCH------------
Confidence 1110 0 000 112356666555542 3456999999998853
Q ss_pred HHHHHHHHHHHHhcCCCCCCcEEEEEecCCCCCCChhhhCCCCcceEEEecCCCHHHHHHHHHHHHhcCCCCCCCCCCHH
Q 007575 451 EREQTLNQLLTEMDGFDSNSAVIVLGATNRSDVLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLG 530 (597)
Q Consensus 451 e~eqtLnqLL~emdg~~~~~~VIVIaaTNrpd~LD~aLlRpgRFd~~I~v~~Pd~~eR~eILk~~l~~~~~~l~~dvdl~ 530 (597)
...|.||..|+.-+ ..++|..|+.++.|-|.+++ |. ..+.|++|+.++..++|+...... ..+.++.
T Consensus 139 ---~aaNaLLK~LEEPp---~~~fILi~~~~~~Ll~TI~S--Rc-q~i~f~~l~~~~~~~~L~~~~~~~----~~~~~~~ 205 (314)
T PRK07399 139 ---AAANALLKTLEEPG---NGTLILIAPSPESLLPTIVS--RC-QIIPFYRLSDEQLEQVLKRLGDEE----ILNINFP 205 (314)
T ss_pred ---HHHHHHHHHHhCCC---CCeEEEEECChHhCcHHHHh--hc-eEEecCCCCHHHHHHHHHHhhccc----cchhHHH
Confidence 34589999998644 33566677788999999998 77 489999999999999998764321 1122346
Q ss_pred HHHHhCCCCCHHHHHHHHHH
Q 007575 531 DIASMTTGFTGADLANLVNE 550 (597)
Q Consensus 531 ~LA~~t~G~SgaDL~~Lv~e 550 (597)
.++....| +++++.++++.
T Consensus 206 ~l~~~a~G-s~~~al~~l~~ 224 (314)
T PRK07399 206 ELLALAQG-SPGAAIANIEQ 224 (314)
T ss_pred HHHHHcCC-CHHHHHHHHHH
Confidence 77777766 56555555543
No 178
>COG1221 PspF Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms]
Probab=99.21 E-value=4.2e-11 Score=129.06 Aligned_cols=198 Identities=26% Similarity=0.365 Sum_probs=129.9
Q ss_pred CCcccccccCChHHHHHHHHHHHHhcChhHHhhcCCCCCCceEEeCCCCChHHHHHHHHHHh----cCCCeeeechhhhH
Q 007575 327 DTITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGE----AEVPFISCSASEFV 402 (597)
Q Consensus 327 ~~vtf~dV~G~de~k~~L~eiv~~l~~p~~~~~lg~~~p~gVLL~GPPGTGKT~LArAIA~e----l~~pfi~is~sef~ 402 (597)
....+++++|.+...+++.+-+..+ .+...+||+.|++||||+++|+++... .+.||+++||..+.
T Consensus 73 ~~~~~~~LIG~~~~~~~~~eqik~~----------ap~~~~vLi~GetGtGKel~A~~iH~~s~r~~~~PFI~~NCa~~~ 142 (403)
T COG1221 73 KSEALDDLIGESPSLQELREQIKAY----------APSGLPVLIIGETGTGKELFARLIHALSARRAEAPFIAFNCAAYS 142 (403)
T ss_pred cchhhhhhhccCHHHHHHHHHHHhh----------CCCCCcEEEecCCCccHHHHHHHHHHhhhcccCCCEEEEEHHHhC
Confidence 3567889999999877777766642 233457999999999999999999643 46799999999774
Q ss_pred HH-------------HhhcchHHHHHHHHHHHhcCCeEEEEcCcchhhhhcCCcccccchhHHHHHHHHHHHHhcCC---
Q 007575 403 EL-------------YVGMGASRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGF--- 466 (597)
Q Consensus 403 ~~-------------~vG~~e~~vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~eqtLnqLL~emdg~--- 466 (597)
+. |.| ....-..+|+.|..+ +||+|||+.+....+ ..|+..||.-
T Consensus 143 en~~~~eLFG~~kGaftG-a~~~k~Glfe~A~GG---tLfLDEI~~LP~~~Q---------------~kLl~~le~g~~~ 203 (403)
T COG1221 143 ENLQEAELFGHEKGAFTG-AQGGKAGLFEQANGG---TLFLDEIHRLPPEGQ---------------EKLLRVLEEGEYR 203 (403)
T ss_pred cCHHHHHHhccccceeec-ccCCcCchheecCCC---EEehhhhhhCCHhHH---------------HHHHHHHHcCceE
Confidence 43 222 233345677777666 999999999875432 4566666641
Q ss_pred --C----CCCcEEEEEecCCC--CCCCh--hhhCCCCcceEEEecCCCHHHHHH--------HHHHHHhcCCCCCCCCC-
Q 007575 467 --D----SNSAVIVLGATNRS--DVLDP--ALRRPGRFDRVVMVETPDKIGREA--------ILKVHVSKKELPLAKDI- 527 (597)
Q Consensus 467 --~----~~~~VIVIaaTNrp--d~LD~--aLlRpgRFd~~I~v~~Pd~~eR~e--------ILk~~l~~~~~~l~~dv- 527 (597)
. -...|.+|+||+.. +.+-. .|.+. |+ .+.+..|+..+|.+ +++.++.+.+.++....
T Consensus 204 rvG~~~~~~~dVRli~AT~~~l~~~~~~g~dl~~r-l~--~~~I~LPpLrER~~Di~~L~e~Fl~~~~~~l~~~~~~~~~ 280 (403)
T COG1221 204 RVGGSQPRPVDVRLICATTEDLEEAVLAGADLTRR-LN--ILTITLPPLRERKEDILLLAEHFLKSEARRLGLPLSVDSP 280 (403)
T ss_pred ecCCCCCcCCCceeeeccccCHHHHHHhhcchhhh-hc--CceecCCChhhchhhHHHHHHHHHHHHHHHcCCCCCCCCH
Confidence 1 23568899998753 22222 33331 33 35666777777742 33444445555554443
Q ss_pred -CHHHHHHhCCCCCHHHHHHHHHHHHHHHH
Q 007575 528 -DLGDIASMTTGFTGADLANLVNEAALLAG 556 (597)
Q Consensus 528 -dl~~LA~~t~G~SgaDL~~Lv~eAal~A~ 556 (597)
.+..|-.+...-+-++|.|+|..++..+.
T Consensus 281 ~a~~~L~~y~~pGNirELkN~Ve~~~~~~~ 310 (403)
T COG1221 281 EALRALLAYDWPGNIRELKNLVERAVAQAS 310 (403)
T ss_pred HHHHHHHhCCCCCcHHHHHHHHHHHHHHhc
Confidence 13444444434467899999999998884
No 179
>PHA02244 ATPase-like protein
Probab=99.21 E-value=5.2e-10 Score=119.44 Aligned_cols=148 Identities=24% Similarity=0.331 Sum_probs=90.9
Q ss_pred cccccccCChHHHHHHHHHHHHhcChhHHhhcCCCCCCceEEeCCCCChHHHHHHHHHHhcCCCeeeechhhhHHHH--h
Q 007575 329 ITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFVELY--V 406 (597)
Q Consensus 329 vtf~dV~G~de~k~~L~eiv~~l~~p~~~~~lg~~~p~gVLL~GPPGTGKT~LArAIA~el~~pfi~is~sef~~~~--v 406 (597)
+.+.-+.+..........+..++.. ..+|||+||||||||++|+++|..++.||+.++.. ...+ .
T Consensus 94 ~d~~~ig~sp~~~~~~~ri~r~l~~-----------~~PVLL~GppGtGKTtLA~aLA~~lg~pfv~In~l--~d~~~L~ 160 (383)
T PHA02244 94 IDTTKIASNPTFHYETADIAKIVNA-----------NIPVFLKGGAGSGKNHIAEQIAEALDLDFYFMNAI--MDEFELK 160 (383)
T ss_pred CCCcccCCCHHHHHHHHHHHHHHhc-----------CCCEEEECCCCCCHHHHHHHHHHHhCCCEEEEecC--hHHHhhc
Confidence 3343344444444455555444432 34699999999999999999999999999998742 1111 1
Q ss_pred hc--chHHHH-HHHHHHHhcCCeEEEEcCcchhhhhcCCcccccchhHHHHHHHHHHHH-----hcC-CCCCCcEEEEEe
Q 007575 407 GM--GASRVR-DLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTE-----MDG-FDSNSAVIVLGA 477 (597)
Q Consensus 407 G~--~e~~vr-~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~eqtLnqLL~e-----mdg-~~~~~~VIVIaa 477 (597)
|. ...... .-|-.|.. ...+|+|||++.+.+.. ...|+.++.. .++ +..+.++.+|+|
T Consensus 161 G~i~~~g~~~dgpLl~A~~-~GgvLiLDEId~a~p~v------------q~~L~~lLd~r~l~l~g~~i~~h~~FRlIAT 227 (383)
T PHA02244 161 GFIDANGKFHETPFYEAFK-KGGLFFIDEIDASIPEA------------LIIINSAIANKFFDFADERVTAHEDFRVISA 227 (383)
T ss_pred ccccccccccchHHHHHhh-cCCEEEEeCcCcCCHHH------------HHHHHHHhccCeEEecCcEEecCCCEEEEEe
Confidence 10 000111 11222222 34699999999875432 1223333321 111 123467899999
Q ss_pred cCCC-----------CCCChhhhCCCCcceEEEecCCCH
Q 007575 478 TNRS-----------DVLDPALRRPGRFDRVVMVETPDK 505 (597)
Q Consensus 478 TNrp-----------d~LD~aLlRpgRFd~~I~v~~Pd~ 505 (597)
+|.+ ..|+++++. ||- .|+++.|+.
T Consensus 228 sN~~~~G~~~~y~G~k~L~~AllD--RFv-~I~~dyp~~ 263 (383)
T PHA02244 228 GNTLGKGADHIYVARNKIDGATLD--RFA-PIEFDYDEK 263 (383)
T ss_pred eCCCccCcccccCCCcccCHHHHh--hcE-EeeCCCCcH
Confidence 9973 578999999 995 799999984
No 180
>PRK09862 putative ATP-dependent protease; Provisional
Probab=99.20 E-value=3.1e-10 Score=126.27 Aligned_cols=211 Identities=24% Similarity=0.295 Sum_probs=132.9
Q ss_pred cccccccCChHHHHHHHHHHHHhcChhHHhhcCCCCCCceEEeCCCCChHHHHHHHHHHhcC------------------
Q 007575 329 ITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAE------------------ 390 (597)
Q Consensus 329 vtf~dV~G~de~k~~L~eiv~~l~~p~~~~~lg~~~p~gVLL~GPPGTGKT~LArAIA~el~------------------ 390 (597)
..|.++.|+..+++.+.-. ......++|+||||+|||+|++.+++.+.
T Consensus 188 ~d~~~v~Gq~~~~~al~la--------------a~~G~~llliG~~GsGKTtLak~L~gllpp~~g~e~le~~~i~s~~g 253 (506)
T PRK09862 188 HDLSDVIGQEQGKRGLEIT--------------AAGGHNLLLIGPPGTGKTMLASRINGLLPDLSNEEALESAAILSLVN 253 (506)
T ss_pred cCeEEEECcHHHHhhhhee--------------ccCCcEEEEECCCCCcHHHHHHHHhccCCCCCCcEEEecchhhhhhc
Confidence 4788999988776553221 22345799999999999999999987531
Q ss_pred ----------CCeeeechhhhHHHHhhcchHHHHHHHHHHHhcCCeEEEEcCcchhhhhcCCcccccchhHHHHHHHHHH
Q 007575 391 ----------VPFISCSASEFVELYVGMGASRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLL 460 (597)
Q Consensus 391 ----------~pfi~is~sef~~~~vG~~e~~vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~eqtLnqLL 460 (597)
.||...+.+.-....+|.+...-...+..|..+ +|||||++.+.. .++..|+
T Consensus 254 ~~~~~~~~~~rPfr~ph~~~s~~~l~GGg~~~~pG~l~~A~gG---vLfLDEi~e~~~---------------~~~~~L~ 315 (506)
T PRK09862 254 AESVQKQWRQRPFRSPHHSASLTAMVGGGAIPGPGEISLAHNG---VLFLDELPEFER---------------RTLDALR 315 (506)
T ss_pred cccccCCcCCCCccCCCccchHHHHhCCCceehhhHhhhccCC---EEecCCchhCCH---------------HHHHHHH
Confidence 123222221111223443332233566777666 999999987642 3456666
Q ss_pred HHhcCCC-----------CCCcEEEEEecCCCC---------------------CCChhhhCCCCcceEEEecCCCHHH-
Q 007575 461 TEMDGFD-----------SNSAVIVLGATNRSD---------------------VLDPALRRPGRFDRVVMVETPDKIG- 507 (597)
Q Consensus 461 ~emdg~~-----------~~~~VIVIaaTNrpd---------------------~LD~aLlRpgRFd~~I~v~~Pd~~e- 507 (597)
..|+.-. -..++.+|+|+|... .|..+++. |||.++.++.|+.++
T Consensus 316 ~~LE~g~v~I~r~g~~~~~pa~f~lIAa~NP~pcG~~~~~~c~c~~~~~~~Y~~~ls~plLD--RfdL~v~v~~~~~~~l 393 (506)
T PRK09862 316 EPIESGQIHLSRTRAKITYPARFQLVAAMNPSPTGHYQGNHNRCTPEQTLRYLNRLSGPFLD--RFDLSLEIPLPPPGIL 393 (506)
T ss_pred HHHHcCcEEEecCCcceeccCCEEEEEeecCccceecCCCCCCcCHHHHHHHHhhCCHhHHh--hccEEEEeCCCCHHHH
Confidence 6664221 145689999999752 36778888 999999999875321
Q ss_pred ---------HHHHHHHHH-------hcCCCCCCCCCCHHH----------------HHHhCCCCCHHHHHHHHHHHHHHH
Q 007575 508 ---------REAILKVHV-------SKKELPLAKDIDLGD----------------IASMTTGFTGADLANLVNEAALLA 555 (597)
Q Consensus 508 ---------R~eILk~~l-------~~~~~~l~~dvdl~~----------------LA~~t~G~SgaDL~~Lv~eAal~A 555 (597)
..++-+... ...+ .+...+.-.. -+....|.|.+....+++-|..+|
T Consensus 394 ~~~~~~~ess~~i~~rV~~ar~~q~~r~~-~~n~~l~~~~l~~~~~l~~~~~~~l~~~~~~~~lS~Ra~~rlLrvARTiA 472 (506)
T PRK09862 394 SKTVVPGESSATVKQRVMAARERQFKRQN-KLNAWLDSPEIRQFCKLESEDARWLEETLIHLGLSIRAWQRLLKVARTIA 472 (506)
T ss_pred hcccCCCCChHHHHHHHhhHHHHHHHHHH-HHhcccCHHHHHHHhCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHH
Confidence 111211100 0000 1111111111 112334789999999999999999
Q ss_pred HhcCCCcccHHHHHHHHHH
Q 007575 556 GRLNKVVVEKIDFIHAVER 574 (597)
Q Consensus 556 ~r~~~~~It~~d~~~Al~~ 574 (597)
..++.+.|+.+|+.+|+.-
T Consensus 473 DL~g~~~V~~~hv~eAl~y 491 (506)
T PRK09862 473 DIDQSDIITRQHLQEAVSY 491 (506)
T ss_pred HHcCCCCCCHHHHHHHHHh
Confidence 9999999999999999764
No 181
>TIGR02031 BchD-ChlD magnesium chelatase ATPase subunit D. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria. Unlike subunit I (TIGR02030), this subunit is not found in archaea.
Probab=99.19 E-value=3.5e-10 Score=128.68 Aligned_cols=193 Identities=19% Similarity=0.233 Sum_probs=129.1
Q ss_pred CceEEeCCCCChHHHHHHHHHHhcC--CCeeeechhhhHHHHhhcc--hHHH--------HHHHHHHHhcCCeEEEEcCc
Q 007575 366 RGVLLVGLPGTGKTLLAKAVAGEAE--VPFISCSASEFVELYVGMG--ASRV--------RDLFARAKKEAPSIIFIDEI 433 (597)
Q Consensus 366 ~gVLL~GPPGTGKT~LArAIA~el~--~pfi~is~sef~~~~vG~~--e~~v--------r~lF~~A~~~aP~ILfIDEI 433 (597)
.+|||.|+||||||++|++++..++ .||+.+..........|.. +..+ ..++.+| ...+||||||
T Consensus 17 g~vLl~G~~GtgKs~lar~l~~~~~~~~pfv~i~~~~t~d~L~G~idl~~~~~~g~~~~~~G~L~~A---~~GvL~lDEi 93 (589)
T TIGR02031 17 GGVAIRARAGTGKTALARALAEILPPIMPFVELPLGVTEDRLIGGIDVEESLAGGQRVTQPGLLDEA---PRGVLYVDMA 93 (589)
T ss_pred ceEEEEcCCCcHHHHHHHHHHHhCCcCCCeEecCcccchhhcccchhhhhhhhcCcccCCCCCeeeC---CCCcEeccch
Confidence 3799999999999999999999875 4788887543333333331 0000 0011112 1249999999
Q ss_pred chhhhhcCCcccccchhHHHHHHHHHHHHhcCCC-----------CCCcEEEEEecCCCC---CCChhhhCCCCcceEEE
Q 007575 434 DAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFD-----------SNSAVIVLGATNRSD---VLDPALRRPGRFDRVVM 499 (597)
Q Consensus 434 DaL~~~r~~~~~~~~~~e~eqtLnqLL~emdg~~-----------~~~~VIVIaaTNrpd---~LD~aLlRpgRFd~~I~ 499 (597)
+.+... +.+.|+..|+.-. ....+.||+++|..+ .|.++|+. ||+.++.
T Consensus 94 ~rl~~~---------------~q~~Ll~al~~g~v~i~r~G~~~~~p~~f~lIAt~np~e~~g~L~~~Lld--Rf~l~v~ 156 (589)
T TIGR02031 94 NLLDDG---------------LSNRLLQALDEGVVIVEREGISVVHPAKFALIATYDPAEGGGGLPDHLLD--RLALHVS 156 (589)
T ss_pred hhCCHH---------------HHHHHHHHHHcCCeEEEECCCceeecCceEEEEecCCccccCCCCHHHHH--hccCeee
Confidence 998643 4467777775321 124688999888765 78999999 9998887
Q ss_pred ec-CCCHHHHHHHHHHHHhcC-----------------------CCCCCCCCCHHHHHHhC--CCCC-HHHHHHHHHHHH
Q 007575 500 VE-TPDKIGREAILKVHVSKK-----------------------ELPLAKDIDLGDIASMT--TGFT-GADLANLVNEAA 552 (597)
Q Consensus 500 v~-~Pd~~eR~eILk~~l~~~-----------------------~~~l~~dvdl~~LA~~t--~G~S-gaDL~~Lv~eAa 552 (597)
+. .|+.++|.+|++.+.... .+.+.++ .++.|+..+ .|.+ .+.-..+++-|.
T Consensus 157 ~~~~~~~~er~eil~~~~~~~~~~~~~~~~~~~~~i~~ar~~~~~V~i~~~-~~~~l~~~~~~~gv~s~Ra~i~~~r~Ar 235 (589)
T TIGR02031 157 LEDVASQDLRVEIVRRERCNEVFRMNDELELLRGQIEAARELLPQVTISAE-QVKELVLTAASLGISGHRADLFAVRAAK 235 (589)
T ss_pred cCCCCCHHHHHHHHHHHHHhhhhhcchhhHHHHHHHHHHHHhcCCccCCHH-HHHHHHHHHHHcCCCCccHHHHHHHHHH
Confidence 76 467788999988765210 1112221 123333322 2333 455567778888
Q ss_pred HHHHhcCCCcccHHHHHHHHHHHhccc
Q 007575 553 LLAGRLNKVVVEKIDFIHAVERSIAVS 579 (597)
Q Consensus 553 l~A~r~~~~~It~~d~~~Al~~v~~g~ 579 (597)
.+|..+++..|+.+|+..|+.-+++--
T Consensus 236 A~Aal~gr~~V~~~Dv~~a~~lvl~hR 262 (589)
T TIGR02031 236 AHAALHGRTEVTEEDLKLAVELVLLPR 262 (589)
T ss_pred HHHHHhCCCCCCHHHHHHHHHHHhhhh
Confidence 899999999999999999999988544
No 182
>COG2204 AtoC Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms]
Probab=99.19 E-value=1.1e-10 Score=127.83 Aligned_cols=206 Identities=24% Similarity=0.330 Sum_probs=134.3
Q ss_pred cccccccCChHHHHHHHHHHHHhcChhHHhhcCCCCCCceEEeCCCCChHHHHHHHHHHhc---CCCeeeechhhhHHH-
Q 007575 329 ITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEA---EVPFISCSASEFVEL- 404 (597)
Q Consensus 329 vtf~dV~G~de~k~~L~eiv~~l~~p~~~~~lg~~~p~gVLL~GPPGTGKT~LArAIA~el---~~pfi~is~sef~~~- 404 (597)
..+.+++|...+.+++.+.+..+... ...|||+|++||||.++|++|.+.. +.||+.+||..+.+.
T Consensus 138 ~~~~~liG~S~am~~l~~~i~kvA~s----------~a~VLI~GESGtGKElvAr~IH~~S~R~~~PFVavNcaAip~~l 207 (464)
T COG2204 138 SLGGELVGESPAMQQLRRLIAKVAPS----------DASVLITGESGTGKELVARAIHQASPRAKGPFIAVNCAAIPENL 207 (464)
T ss_pred cccCCceecCHHHHHHHHHHHHHhCC----------CCCEEEECCCCCcHHHHHHHHHhhCcccCCCceeeecccCCHHH
Confidence 45678999999999999999876543 3479999999999999999997755 679999999865433
Q ss_pred ----Hhhcc-------hHHHHHHHHHHHhcCCeEEEEcCcchhhhhcCCcccccchhHHHHHHHHHHHHhcC-----CCC
Q 007575 405 ----YVGMG-------ASRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDG-----FDS 468 (597)
Q Consensus 405 ----~vG~~-------e~~vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~eqtLnqLL~emdg-----~~~ 468 (597)
..|.. ..+-...|++|..+ .||||||..+...-+ ..||..++. ..+
T Consensus 208 ~ESELFGhekGAFTGA~~~r~G~fE~A~GG---TLfLDEI~~mpl~~Q---------------~kLLRvLqe~~~~rvG~ 269 (464)
T COG2204 208 LESELFGHEKGAFTGAITRRIGRFEQANGG---TLFLDEIGEMPLELQ---------------VKLLRVLQEREFERVGG 269 (464)
T ss_pred HHHHhhcccccCcCCcccccCcceeEcCCc---eEEeeccccCCHHHH---------------HHHHHHHHcCeeEecCC
Confidence 22211 11223467777666 999999998864432 345555442 111
Q ss_pred ----CCcEEEEEecCCC-------CCCChhhhCCCCcceEEEecCCCHHHHHH--------HHHHHHhcCCCCCCCCCCH
Q 007575 469 ----NSAVIVLGATNRS-------DVLDPALRRPGRFDRVVMVETPDKIGREA--------ILKVHVSKKELPLAKDIDL 529 (597)
Q Consensus 469 ----~~~VIVIaaTNrp-------d~LD~aLlRpgRFd~~I~v~~Pd~~eR~e--------ILk~~l~~~~~~l~~dvdl 529 (597)
+-.|-||+|||+. ..+-+.|.- |+. ++.+..|...+|.+ +++.+..+.+.+ ...++-
T Consensus 270 ~~~i~vdvRiIaaT~~dL~~~v~~G~FReDLyy--RLn-V~~i~iPpLRER~EDIp~L~~hfl~~~~~~~~~~-~~~~s~ 345 (464)
T COG2204 270 NKPIKVDVRIIAATNRDLEEEVAAGRFREDLYY--RLN-VVPLRLPPLRERKEDIPLLAEHFLKRFAAELGRP-PKGFSP 345 (464)
T ss_pred CcccceeeEEEeecCcCHHHHHHcCCcHHHHHh--hhc-cceecCCcccccchhHHHHHHHHHHHHHHHcCCC-CCCCCH
Confidence 3468899999975 112233332 343 67888899888864 233333333322 233444
Q ss_pred ---HHHHHhCCCCCHHHHHHHHHHHHHHHHhcCCCcccHHHHH
Q 007575 530 ---GDIASMTTGFTGADLANLVNEAALLAGRLNKVVVEKIDFI 569 (597)
Q Consensus 530 ---~~LA~~t~G~SgaDL~~Lv~eAal~A~r~~~~~It~~d~~ 569 (597)
..|..+.+.-+.++|+|++.++++.+ ....|+.+|+.
T Consensus 346 ~a~~~L~~y~WPGNVREL~N~ver~~il~---~~~~i~~~~l~ 385 (464)
T COG2204 346 EALAALLAYDWPGNVRELENVVERAVILS---EGPEIEVEDLP 385 (464)
T ss_pred HHHHHHHhCCCChHHHHHHHHHHHHHhcC---Cccccchhhcc
Confidence 44444444445689999999998887 44455555543
No 183
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=99.18 E-value=3.8e-10 Score=109.73 Aligned_cols=149 Identities=18% Similarity=0.224 Sum_probs=99.7
Q ss_pred CCCCceEEeCCCCChHHHHHHHHHHhcCCC-------ee-eechhhhHHH----------H-hhcchHHHHHHHHHHHh-
Q 007575 363 RPPRGVLLVGLPGTGKTLLAKAVAGEAEVP-------FI-SCSASEFVEL----------Y-VGMGASRVRDLFARAKK- 422 (597)
Q Consensus 363 ~~p~gVLL~GPPGTGKT~LArAIA~el~~p-------fi-~is~sef~~~----------~-vG~~e~~vr~lF~~A~~- 422 (597)
+.+..+||+||+|+|||++|++++.++... .. ..+|..+... . ...+.+.++++.+.+..
T Consensus 12 ~~~~~~L~~G~~G~gkt~~a~~~~~~l~~~~~~~~~~c~~~~~c~~~~~~~~~d~~~~~~~~~~~~~~~i~~i~~~~~~~ 91 (188)
T TIGR00678 12 RLAHAYLFAGPEGVGKELLALALAKALLCEQPGGGEPCGECPSCRLIEAGNHPDLHRLEPEGQSIKVDQVRELVEFLSRT 91 (188)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCcEEEeccccCcCCHHHHHHHHHHHccC
Confidence 456789999999999999999999986432 10 0011111000 0 01233566666766654
Q ss_pred ---cCCeEEEEcCcchhhhhcCCcccccchhHHHHHHHHHHHHhcCCCCCCcEEEEEecCCCCCCChhhhCCCCcceEEE
Q 007575 423 ---EAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATNRSDVLDPALRRPGRFDRVVM 499 (597)
Q Consensus 423 ---~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~eqtLnqLL~emdg~~~~~~VIVIaaTNrpd~LD~aLlRpgRFd~~I~ 499 (597)
....||+|||+|.+... ..+.|+..|+.. +...++|.+|+.++.+.+++.+ |+. .+.
T Consensus 92 ~~~~~~kviiide~~~l~~~---------------~~~~Ll~~le~~--~~~~~~il~~~~~~~l~~~i~s--r~~-~~~ 151 (188)
T TIGR00678 92 PQESGRRVVIIEDAERMNEA---------------AANALLKTLEEP--PPNTLFILITPSPEKLLPTIRS--RCQ-VLP 151 (188)
T ss_pred cccCCeEEEEEechhhhCHH---------------HHHHHHHHhcCC--CCCeEEEEEECChHhChHHHHh--hcE-Eee
Confidence 33569999999998532 347788888863 3345566667777899999998 774 899
Q ss_pred ecCCCHHHHHHHHHHHHhcCCCCCCCCCCHHHHHHhCCC
Q 007575 500 VETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTTG 538 (597)
Q Consensus 500 v~~Pd~~eR~eILk~~l~~~~~~l~~dvdl~~LA~~t~G 538 (597)
+.+|+.++..++++.+ + +.++ .++.++..+.|
T Consensus 152 ~~~~~~~~~~~~l~~~----g--i~~~-~~~~i~~~~~g 183 (188)
T TIGR00678 152 FPPLSEEALLQWLIRQ----G--ISEE-AAELLLALAGG 183 (188)
T ss_pred CCCCCHHHHHHHHHHc----C--CCHH-HHHHHHHHcCC
Confidence 9999999998888775 2 2222 46667766655
No 184
>PF01078 Mg_chelatase: Magnesium chelatase, subunit ChlI; InterPro: IPR000523 Magnesium-chelatase is a three-component enzyme that catalyses the insertion of Mg2+ into protoporphyrin IX. This is the first unique step in the synthesis of (bacterio)chlorophyll. As a result, it is thought that Mg-chelatase has an important role in channeling intermediates into the (bacterio)chlorophyll branch in response to conditions suitable for photosynthetic growth. ChlI and BchD have molecular weights between 38-42 kDa.; GO: 0016851 magnesium chelatase activity, 0015979 photosynthesis, 0015995 chlorophyll biosynthetic process; PDB: 2X31_J 1G8P_A 3K1J_B.
Probab=99.17 E-value=3.7e-11 Score=118.98 Aligned_cols=119 Identities=28% Similarity=0.452 Sum_probs=72.5
Q ss_pred ccccccCChHHHHHHHHHHHHhcChhHHhhcCCCCCCceEEeCCCCChHHHHHHHHHHhcC-------------------
Q 007575 330 TFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAE------------------- 390 (597)
Q Consensus 330 tf~dV~G~de~k~~L~eiv~~l~~p~~~~~lg~~~p~gVLL~GPPGTGKT~LArAIA~el~------------------- 390 (597)
.|+||+|++++|..|.-... | ..++||+||||||||++|+++..-+.
T Consensus 1 Df~dI~GQe~aKrAL~iAAa-----------G---~h~lLl~GppGtGKTmlA~~l~~lLP~l~~~e~le~~~i~s~~~~ 66 (206)
T PF01078_consen 1 DFSDIVGQEEAKRALEIAAA-----------G---GHHLLLIGPPGTGKTMLARRLPSLLPPLTEEEALEVSKIYSVAGL 66 (206)
T ss_dssp -TCCSSSTHHHHHHHHHHHH-----------C---C--EEEES-CCCTHHHHHHHHHHCS--CCEECCESS--S-TT---
T ss_pred ChhhhcCcHHHHHHHHHHHc-----------C---CCCeEEECCCCCCHHHHHHHHHHhCCCCchHHHhhhccccccccC
Confidence 38899999999999887765 2 35899999999999999999997541
Q ss_pred ---------CCeeeechhhhHHHHhhcchHHHHHHHHHHHhcCCeEEEEcCcchhhhhcCCcccccchhHHHHHHHHHHH
Q 007575 391 ---------VPFISCSASEFVELYVGMGASRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLT 461 (597)
Q Consensus 391 ---------~pfi~is~sef~~~~vG~~e~~vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~eqtLnqLL~ 461 (597)
.||.....+.-....+|.+....-..+..|..+ |||+||+-.+- ..+++.|+.
T Consensus 67 ~~~~~~~~~~Pfr~phhs~s~~~liGgg~~~~PGeislAh~G---VLflDE~~ef~---------------~~vld~Lr~ 128 (206)
T PF01078_consen 67 GPDEGLIRQRPFRAPHHSASEAALIGGGRPPRPGEISLAHRG---VLFLDELNEFD---------------RSVLDALRQ 128 (206)
T ss_dssp S---EEEE---EEEE-TT--HHHHHEEGGGEEE-CGGGGTTS---EEEECETTTS----------------HHHHHHHHH
T ss_pred CCCCceecCCCcccCCCCcCHHHHhCCCcCCCcCHHHHhcCC---EEEechhhhcC---------------HHHHHHHHH
Confidence 244443333222223333322222234444444 99999996653 457788888
Q ss_pred HhcCCC-----------CCCcEEEEEecCC
Q 007575 462 EMDGFD-----------SNSAVIVLGATNR 480 (597)
Q Consensus 462 emdg~~-----------~~~~VIVIaaTNr 480 (597)
-|+.-. -...+++|+|.|.
T Consensus 129 ple~g~v~i~R~~~~~~~Pa~f~lv~a~NP 158 (206)
T PF01078_consen 129 PLEDGEVTISRAGGSVTYPARFLLVAAMNP 158 (206)
T ss_dssp HHHHSBEEEEETTEEEEEB--EEEEEEE-S
T ss_pred HHHCCeEEEEECCceEEEecccEEEEEecc
Confidence 876321 1356899999986
No 185
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=99.17 E-value=5e-10 Score=116.60 Aligned_cols=145 Identities=23% Similarity=0.320 Sum_probs=98.9
Q ss_pred cccCChHHHHHHHHHHHHhcChhHHhhcCCCCCCceEEeCCCCChHHHHHHHHHHhcC----------------------
Q 007575 333 DVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAE---------------------- 390 (597)
Q Consensus 333 dV~G~de~k~~L~eiv~~l~~p~~~~~lg~~~p~gVLL~GPPGTGKT~LArAIA~el~---------------------- 390 (597)
+++|.+++...+...+..-. +.|..+||+||||||||++|.++|+++.
T Consensus 2 ~~~~~~~~~~~l~~~~~~~~----------~~~halL~~Gp~G~Gktt~a~~lA~~l~~~~~~~~~~~~~~~~~~~~~~~ 71 (325)
T COG0470 2 ELVPWQEAVKRLLVQALESG----------RLPHALLFYGPPGVGKTTAALALAKELLCENPTGLLPCGHCRSCKLIPAG 71 (325)
T ss_pred CcccchhHHHHHHHHHHhcC----------CCCceeeeeCCCCCCHHHHHHHHHHHHhCCCcccCCcccchhhhhHHhhc
Confidence 56777777766666654211 3445799999999999999999999875
Q ss_pred --CCeeeechhhhHHHHhhcchHHHHHHHHHHHhc----CCeEEEEcCcchhhhhcCCcccccchhHHHHHHHHHHHHhc
Q 007575 391 --VPFISCSASEFVELYVGMGASRVRDLFARAKKE----APSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMD 464 (597)
Q Consensus 391 --~pfi~is~sef~~~~vG~~e~~vr~lF~~A~~~----aP~ILfIDEIDaL~~~r~~~~~~~~~~e~eqtLnqLL~emd 464 (597)
-.|+.++.++....- .....++++-+..... ...||+|||+|.+... ..|.++..|+
T Consensus 72 ~~~d~lel~~s~~~~~~--i~~~~vr~~~~~~~~~~~~~~~kviiidead~mt~~---------------A~nallk~lE 134 (325)
T COG0470 72 NHPDFLELNPSDLRKID--IIVEQVRELAEFLSESPLEGGYKVVIIDEADKLTED---------------AANALLKTLE 134 (325)
T ss_pred CCCceEEecccccCCCc--chHHHHHHHHHHhccCCCCCCceEEEeCcHHHHhHH---------------HHHHHHHHhc
Confidence 355566655432211 1234455554444332 3569999999999643 4488999888
Q ss_pred CCCCCCcEEEEEecCCCCCCChhhhCCCCcceEEEecCCCHHHHH
Q 007575 465 GFDSNSAVIVLGATNRSDVLDPALRRPGRFDRVVMVETPDKIGRE 509 (597)
Q Consensus 465 g~~~~~~VIVIaaTNrpd~LD~aLlRpgRFd~~I~v~~Pd~~eR~ 509 (597)
. +.....+|.+||.++.+-+.+.+ |.. .+.|.+|+.....
T Consensus 135 e--p~~~~~~il~~n~~~~il~tI~S--Rc~-~i~f~~~~~~~~i 174 (325)
T COG0470 135 E--PPKNTRFILITNDPSKILPTIRS--RCQ-RIRFKPPSRLEAI 174 (325)
T ss_pred c--CCCCeEEEEEcCChhhccchhhh--cce-eeecCCchHHHHH
Confidence 4 44556777888999998888888 664 6777775544333
No 186
>KOG1969 consensus DNA replication checkpoint protein CHL12/CTF18 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=99.16 E-value=7.9e-10 Score=124.24 Aligned_cols=208 Identities=22% Similarity=0.336 Sum_probs=132.3
Q ss_pred cCCCCcccccccCChHHHHHHHHHHHHhcChhHHh----hc-------------------CCCCCCceEEeCCCCChHHH
Q 007575 324 EQGDTITFADVAGVDEAKEELEEIVEFLRSPDKYI----RL-------------------GARPPRGVLLVGLPGTGKTL 380 (597)
Q Consensus 324 ~~~~~vtf~dV~G~de~k~~L~eiv~~l~~p~~~~----~l-------------------g~~~p~gVLL~GPPGTGKT~ 380 (597)
.+...-.|.|+.|-+.+-..+...+... ++..|. ++ +.++.+-+||+||||-|||+
T Consensus 263 dky~Pk~FtdLLsDe~tNR~~L~WLK~W-D~~VFg~~vsrl~~s~~~~~ke~~~~~~~~s~RP~kKilLL~GppGlGKTT 341 (877)
T KOG1969|consen 263 DKYRPKKFTDLLSDEKTNRRMLGWLKQW-DPCVFGQKVSRLLASKGPTEKEVLDMELDPSKRPPKKILLLCGPPGLGKTT 341 (877)
T ss_pred cccChhHHHHHhcchhHHHHHHHHHHhh-cHHhhcchHhhhccccccchhhhhhcccCccCCCccceEEeecCCCCChhH
Confidence 3445567888888887655544433210 111111 11 22334568899999999999
Q ss_pred HHHHHHHhcCCCeeeechhhhHHHHhhcchHHHHHHHHHHH--------hcCCeEEEEcCcchhhhhcCCcccccchhHH
Q 007575 381 LAKAVAGEAEVPFISCSASEFVELYVGMGASRVRDLFARAK--------KEAPSIIFIDEIDAVAKSRDGRFRIVSNDER 452 (597)
Q Consensus 381 LArAIA~el~~pfi~is~sef~~~~vG~~e~~vr~lF~~A~--------~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~ 452 (597)
||+.||+++|..++.|++++-.+ +..++..+..|. ...|..|+|||||--.
T Consensus 342 LAHViAkqaGYsVvEINASDeRt------~~~v~~kI~~avq~~s~l~adsrP~CLViDEIDGa~--------------- 400 (877)
T KOG1969|consen 342 LAHVIAKQAGYSVVEINASDERT------APMVKEKIENAVQNHSVLDADSRPVCLVIDEIDGAP--------------- 400 (877)
T ss_pred HHHHHHHhcCceEEEeccccccc------HHHHHHHHHHHHhhccccccCCCcceEEEecccCCc---------------
Confidence 99999999999999999987432 233333333332 2568899999998532
Q ss_pred HHHHHHHHHHhc-------CCCCC------------CcEEEEEecCCCCCCChhhhCCCCcceEEEecCCCHHHHHHHHH
Q 007575 453 EQTLNQLLTEMD-------GFDSN------------SAVIVLGATNRSDVLDPALRRPGRFDRVVMVETPDKIGREAILK 513 (597)
Q Consensus 453 eqtLnqLL~emd-------g~~~~------------~~VIVIaaTNrpd~LD~aLlRpgRFd~~I~v~~Pd~~eR~eILk 513 (597)
...++.++..+. |-+.. -...||+.+|.. --|+|+.---|..++.|.+|...-..+=|+
T Consensus 401 ~~~Vdvilslv~a~~k~~~Gkq~~~~~~rkkkr~~~L~RPIICICNdL--YaPaLR~Lr~~A~ii~f~~p~~s~Lv~RL~ 478 (877)
T KOG1969|consen 401 RAAVDVILSLVKATNKQATGKQAKKDKKRKKKRSKLLTRPIICICNDL--YAPALRPLRPFAEIIAFVPPSQSRLVERLN 478 (877)
T ss_pred HHHHHHHHHHHHhhcchhhcCcccchhhhhhhccccccCCEEEEecCc--cchhhhhcccceEEEEecCCChhHHHHHHH
Confidence 223344444433 11110 123567777743 456664332488899999998887777788
Q ss_pred HHHhcCCCCCCCCCCHHHHHHhCCCCCHHHHHHHHHHHHHHHHhcCC
Q 007575 514 VHVSKKELPLAKDIDLGDIASMTTGFTGADLANLVNEAALLAGRLNK 560 (597)
Q Consensus 514 ~~l~~~~~~l~~dvdl~~LA~~t~G~SgaDL~~Lv~eAal~A~r~~~ 560 (597)
..+.+.++..... .+..|+..|. .||++.+|....+|.+..+
T Consensus 479 ~IC~rE~mr~d~~-aL~~L~el~~----~DIRsCINtLQfLa~~~~r 520 (877)
T KOG1969|consen 479 EICHRENMRADSK-ALNALCELTQ----NDIRSCINTLQFLASNVDR 520 (877)
T ss_pred HHHhhhcCCCCHH-HHHHHHHHhc----chHHHHHHHHHHHHHhccc
Confidence 8777777665433 2555555554 5999999999998876544
No 187
>PRK15429 formate hydrogenlyase transcriptional activator FhlA; Provisional
Probab=99.16 E-value=3.9e-10 Score=130.57 Aligned_cols=196 Identities=23% Similarity=0.324 Sum_probs=127.3
Q ss_pred CcccccccCChHHHHHHHHHHHHhcChhHHhhcCCCCCCceEEeCCCCChHHHHHHHHHHhc---CCCeeeechhhhHHH
Q 007575 328 TITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEA---EVPFISCSASEFVEL 404 (597)
Q Consensus 328 ~vtf~dV~G~de~k~~L~eiv~~l~~p~~~~~lg~~~p~gVLL~GPPGTGKT~LArAIA~el---~~pfi~is~sef~~~ 404 (597)
..+|++++|.....+.+.+.+..+.. ...+|||+|++|||||++|++|.... +.||+.++|..+...
T Consensus 372 n~~~~~liG~S~~~~~~~~~~~~~a~----------~~~pVLI~GE~GTGK~~lA~~ih~~s~r~~~~~v~i~c~~~~~~ 441 (686)
T PRK15429 372 DSEFGEIIGRSEAMYSVLKQVEMVAQ----------SDSTVLILGETGTGKELIARAIHNLSGRNNRRMVKMNCAAMPAG 441 (686)
T ss_pred cccccceeecCHHHHHHHHHHHHHhC----------CCCCEEEECCCCcCHHHHHHHHHHhcCCCCCCeEEEecccCChh
Confidence 35788999999998888887775432 23479999999999999999998754 679999999865321
Q ss_pred -----Hhhcc-------hHHHHHHHHHHHhcCCeEEEEcCcchhhhhcCCcccccchhHHHHHHHHHHHHhcCCC-----
Q 007575 405 -----YVGMG-------ASRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFD----- 467 (597)
Q Consensus 405 -----~vG~~-------e~~vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~eqtLnqLL~emdg~~----- 467 (597)
..|.. .......|+.+.. .+|||||||.+.... ...|+..++.-.
T Consensus 442 ~~~~~lfg~~~~~~~g~~~~~~g~le~a~~---GtL~Ldei~~L~~~~---------------Q~~L~~~l~~~~~~~~g 503 (686)
T PRK15429 442 LLESDLFGHERGAFTGASAQRIGRFELADK---SSLFLDEVGDMPLEL---------------QPKLLRVLQEQEFERLG 503 (686)
T ss_pred HhhhhhcCcccccccccccchhhHHHhcCC---CeEEEechhhCCHHH---------------HHHHHHHHHhCCEEeCC
Confidence 22210 0112234554443 499999999986443 244555553211
Q ss_pred ----CCCcEEEEEecCCC-------CCCChhhhCCCCcceEEEecCCCHHHHHH----HHHHHHhc----CCCC---CCC
Q 007575 468 ----SNSAVIVLGATNRS-------DVLDPALRRPGRFDRVVMVETPDKIGREA----ILKVHVSK----KELP---LAK 525 (597)
Q Consensus 468 ----~~~~VIVIaaTNrp-------d~LD~aLlRpgRFd~~I~v~~Pd~~eR~e----ILk~~l~~----~~~~---l~~ 525 (597)
...++-+|++|+.. ..+.+.|.. |+. .+.+..|...+|.+ +++.++.+ .+.+ +.+
T Consensus 504 ~~~~~~~~~RiI~~t~~~l~~~~~~~~f~~~L~~--~l~-~~~i~lPpLreR~~Di~~L~~~~l~~~~~~~~~~~~~~s~ 580 (686)
T PRK15429 504 SNKIIQTDVRLIAATNRDLKKMVADREFRSDLYY--RLN-VFPIHLPPLRERPEDIPLLVKAFTFKIARRMGRNIDSIPA 580 (686)
T ss_pred CCCcccceEEEEEeCCCCHHHHHHcCcccHHHHh--ccC-eeEEeCCChhhhHhHHHHHHHHHHHHHHHHcCCCCCCcCH
Confidence 12457889998865 123333433 343 56778888888864 33443332 1222 222
Q ss_pred CCCHHHHHHhCCCCCHHHHHHHHHHHHHHH
Q 007575 526 DIDLGDIASMTTGFTGADLANLVNEAALLA 555 (597)
Q Consensus 526 dvdl~~LA~~t~G~SgaDL~~Lv~eAal~A 555 (597)
+ .++.|..+.+..+.++|++++++|+..+
T Consensus 581 ~-al~~L~~y~WPGNvrEL~~~i~~a~~~~ 609 (686)
T PRK15429 581 E-TLRTLSNMEWPGNVRELENVIERAVLLT 609 (686)
T ss_pred H-HHHHHHhCCCCCcHHHHHHHHHHHHHhC
Confidence 2 3667777777678899999999999765
No 188
>PRK04132 replication factor C small subunit; Provisional
Probab=99.16 E-value=5e-10 Score=130.69 Aligned_cols=159 Identities=22% Similarity=0.235 Sum_probs=122.9
Q ss_pred ceEEeC--CCCChHHHHHHHHHHhc-----CCCeeeechhhhHHHHhhcchHHHHHHHHHHHhcC------CeEEEEcCc
Q 007575 367 GVLLVG--LPGTGKTLLAKAVAGEA-----EVPFISCSASEFVELYVGMGASRVRDLFARAKKEA------PSIIFIDEI 433 (597)
Q Consensus 367 gVLL~G--PPGTGKT~LArAIA~el-----~~pfi~is~sef~~~~vG~~e~~vr~lF~~A~~~a------P~ILfIDEI 433 (597)
.-+..| |++.|||++|+++|+++ +.+++.+++++.. +...++++...+.... ..|++|||+
T Consensus 566 ~~~~~G~lPh~lGKTT~A~ala~~l~g~~~~~~~lElNASd~r------gid~IR~iIk~~a~~~~~~~~~~KVvIIDEa 639 (846)
T PRK04132 566 HNFIGGNLPTVLHNTTAALALARELFGENWRHNFLELNASDER------GINVIREKVKEFARTKPIGGASFKIIFLDEA 639 (846)
T ss_pred hhhhcCCCCCcccHHHHHHHHHHhhhcccccCeEEEEeCCCcc------cHHHHHHHHHHHHhcCCcCCCCCEEEEEECc
Confidence 456678 99999999999999997 5689999998742 2346777766554332 269999999
Q ss_pred chhhhhcCCcccccchhHHHHHHHHHHHHhcCCCCCCcEEEEEecCCCCCCChhhhCCCCcceEEEecCCCHHHHHHHHH
Q 007575 434 DAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATNRSDVLDPALRRPGRFDRVVMVETPDKIGREAILK 513 (597)
Q Consensus 434 DaL~~~r~~~~~~~~~~e~eqtLnqLL~emdg~~~~~~VIVIaaTNrpd~LD~aLlRpgRFd~~I~v~~Pd~~eR~eILk 513 (597)
|.+... ..+.|+..|+... ..+.+|.+||.+..+.++|++ |+ ..+.|++|+.++..+.|+
T Consensus 640 D~Lt~~---------------AQnALLk~lEep~--~~~~FILi~N~~~kIi~tIrS--RC-~~i~F~~ls~~~i~~~L~ 699 (846)
T PRK04132 640 DALTQD---------------AQQALRRTMEMFS--SNVRFILSCNYSSKIIEPIQS--RC-AIFRFRPLRDEDIAKRLR 699 (846)
T ss_pred ccCCHH---------------HHHHHHHHhhCCC--CCeEEEEEeCChhhCchHHhh--hc-eEEeCCCCCHHHHHHHHH
Confidence 999643 3478999998543 467888889999999999998 76 489999999999999999
Q ss_pred HHHhcCCCCCCCCCCHHHHHHhCCCCCHHHHHHHHHHHHH
Q 007575 514 VHVSKKELPLAKDIDLGDIASMTTGFTGADLANLVNEAAL 553 (597)
Q Consensus 514 ~~l~~~~~~l~~dvdl~~LA~~t~G~SgaDL~~Lv~eAal 553 (597)
..+.+.++.+.++ .+..|+..+.| +.+...++++.++.
T Consensus 700 ~I~~~Egi~i~~e-~L~~Ia~~s~G-DlR~AIn~Lq~~~~ 737 (846)
T PRK04132 700 YIAENEGLELTEE-GLQAILYIAEG-DMRRAINILQAAAA 737 (846)
T ss_pred HHHHhcCCCCCHH-HHHHHHHHcCC-CHHHHHHHHHHHHH
Confidence 8887766666554 58889988887 55666677665543
No 189
>TIGR00602 rad24 checkpoint protein rad24. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.12 E-value=1.1e-09 Score=124.82 Aligned_cols=206 Identities=13% Similarity=0.138 Sum_probs=121.8
Q ss_pred cCCCCcccccccCChHHHHHHHHHHHHhcChhHHhhcCCCCCCceEEeCCCCChHHHHHHHHHHhcCCCeee-echh---
Q 007575 324 EQGDTITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFIS-CSAS--- 399 (597)
Q Consensus 324 ~~~~~vtf~dV~G~de~k~~L~eiv~~l~~p~~~~~lg~~~p~gVLL~GPPGTGKT~LArAIA~el~~pfi~-is~s--- 399 (597)
+...+.+++||+|+++..++|+.++..... +..+.+.++|+||||||||++++.+|++++..++. .+..
T Consensus 76 eKyrP~~ldel~~~~~ki~~l~~~l~~~~~-------~~~~~~illL~GP~GsGKTTl~~~la~~l~~~~~Ew~npv~~~ 148 (637)
T TIGR00602 76 EKYKPETQHELAVHKKKIEEVETWLKAQVL-------ENAPKRILLITGPSGCGKSTTIKILSKELGIQVQEWSNPTLPD 148 (637)
T ss_pred HHhCCCCHHHhcCcHHHHHHHHHHHHhccc-------ccCCCcEEEEECCCCCCHHHHHHHHHHHhhhHHHHHhhhhhhc
Confidence 444578899999999998888887764322 22334459999999999999999999998866544 1111
Q ss_pred hhH----------HH--HhhcchHHHHHHHHHHHh----------cCCeEEEEcCcchhhhhcCCcccccchhHHHHHHH
Q 007575 400 EFV----------EL--YVGMGASRVRDLFARAKK----------EAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLN 457 (597)
Q Consensus 400 ef~----------~~--~vG~~e~~vr~lF~~A~~----------~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~eqtLn 457 (597)
... .. .+....+.++.++..+.. ....||+||||+.+... . .+.+.
T Consensus 149 ~~~~~~~~~~s~~~~~~~~~s~~~~F~~fl~~a~~~~~~~g~~~~~~~~IILIDEiPn~~~r-~-----------~~~lq 216 (637)
T TIGR00602 149 FQKNDHKVTLSLESCFSNFQSQIEVFSEFLLRATNKLQMLGDDLMTDKKIILVEDLPNQFYR-D-----------TRALH 216 (637)
T ss_pred ccccccccchhhhhccccccchHHHHHHHHHHHHhhhcccccccCCceeEEEeecchhhchh-h-----------HHHHH
Confidence 000 00 001123344555555542 24569999999987632 1 11333
Q ss_pred HHHH-HhcCCCCCCcEEEEEecC-CCC--------------CCChhhhCCCCcceEEEecCCCHHHHHHHHHHHHhcCCC
Q 007575 458 QLLT-EMDGFDSNSAVIVLGATN-RSD--------------VLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKKEL 521 (597)
Q Consensus 458 qLL~-emdg~~~~~~VIVIaaTN-rpd--------------~LD~aLlRpgRFd~~I~v~~Pd~~eR~eILk~~l~~~~~ 521 (597)
.+|. .... ...+.+|++++ .+. .|.++++...|.. +|.|.+.......+.|+..+.....
T Consensus 217 ~lLr~~~~e---~~~~pLI~I~TE~~~~~~~~~~~~f~~~~lL~~eLls~~rv~-~I~FnPia~t~l~K~L~rIl~~E~~ 292 (637)
T TIGR00602 217 EILRWKYVS---IGRCPLVFIITESLEGDNNQRRLLFPAETIMNKEILEEPRVS-NISFNPIAPTIMKKFLNRIVTIEAK 292 (637)
T ss_pred HHHHHHhhc---CCCceEEEEecCCccccccccccccchhcccCHhHhccccee-EEEeCCCCHHHHHHHHHHHHHhhhh
Confidence 4444 2111 22233333332 121 1347787533553 7899999999988888877765432
Q ss_pred CCCCC------CCHHHHHHhCCCCCHHHHHHHHHHHHHHHH
Q 007575 522 PLAKD------IDLGDIASMTTGFTGADLANLVNEAALLAG 556 (597)
Q Consensus 522 ~l~~d------vdl~~LA~~t~G~SgaDL~~Lv~eAal~A~ 556 (597)
....+ -.++.|+... .+|++.+++...+.+.
T Consensus 293 ~~~~~~~~p~~~~l~~I~~~s----~GDiRsAIn~LQf~~~ 329 (637)
T TIGR00602 293 KNGEKIKVPKKTSVELLCQGC----SGDIRSAINSLQFSSS 329 (637)
T ss_pred ccccccccCCHHHHHHHHHhC----CChHHHHHHHHHHHHh
Confidence 22221 1355666544 4588888887666543
No 190
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=99.12 E-value=8.2e-11 Score=108.45 Aligned_cols=109 Identities=31% Similarity=0.417 Sum_probs=69.2
Q ss_pred ceEEeCCCCChHHHHHHHHHHhcCCCeeeechhhhHH--HHhhcchHH-------HHHHHHHHHhcCCeEEEEcCcchhh
Q 007575 367 GVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFVE--LYVGMGASR-------VRDLFARAKKEAPSIIFIDEIDAVA 437 (597)
Q Consensus 367 gVLL~GPPGTGKT~LArAIA~el~~pfi~is~sef~~--~~vG~~e~~-------vr~lF~~A~~~aP~ILfIDEIDaL~ 437 (597)
+|||+||||||||+||+.+|..++.+++.++++...+ .+.|.-.-. -..+...++ .++|++||||+...
T Consensus 1 ~vlL~G~~G~GKt~l~~~la~~~~~~~~~i~~~~~~~~~dl~g~~~~~~~~~~~~~~~l~~a~~--~~~il~lDEin~a~ 78 (139)
T PF07728_consen 1 PVLLVGPPGTGKTTLARELAALLGRPVIRINCSSDTTEEDLIGSYDPSNGQFEFKDGPLVRAMR--KGGILVLDEINRAP 78 (139)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHTCEEEEEE-TTTSTHHHHHCEEET-TTTTCEEE-CCCTTHH--EEEEEEESSCGG--
T ss_pred CEEEECCCCCCHHHHHHHHHHHhhcceEEEEeccccccccceeeeeeccccccccccccccccc--ceeEEEECCcccCC
Confidence 5899999999999999999999999999988775422 122211000 000011111 46799999998753
Q ss_pred hhcCCcccccchhHHHHHHHHHHHHhcCCC-----------CCC------cEEEEEecCCCC----CCChhhhCCCCc
Q 007575 438 KSRDGRFRIVSNDEREQTLNQLLTEMDGFD-----------SNS------AVIVLGATNRSD----VLDPALRRPGRF 494 (597)
Q Consensus 438 ~~r~~~~~~~~~~e~eqtLnqLL~emdg~~-----------~~~------~VIVIaaTNrpd----~LD~aLlRpgRF 494 (597)
..++..|+..++.-. ... ++.+|+|+|..+ .++++|++ ||
T Consensus 79 ---------------~~v~~~L~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~t~N~~~~~~~~l~~al~~--Rf 139 (139)
T PF07728_consen 79 ---------------PEVLESLLSLLEERRIQLPEGGEEIKEPNNDLASPNFRIIATMNPRDKGRKELSPALLD--RF 139 (139)
T ss_dssp ---------------HHHHHTTHHHHSSSEEEE-TSSSEEE--TT------EEEEEEESSST--TTTTCHHHHT--T-
T ss_pred ---------------HHHHHHHHHHHhhCcccccCCCcEEecCcccccccceEEEEEEcCCCCCcCcCCHHHHh--hC
Confidence 234444555444210 011 489999999998 89999999 87
No 191
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=99.12 E-value=8e-10 Score=120.76 Aligned_cols=155 Identities=26% Similarity=0.416 Sum_probs=89.4
Q ss_pred cccccCChHHHHHHHHHHHHhcChhHHhhcCCCCCCceEEeCCCCChHHHHHHHHHHhcCC-------Ceeeec----hh
Q 007575 331 FADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEV-------PFISCS----AS 399 (597)
Q Consensus 331 f~dV~G~de~k~~L~eiv~~l~~p~~~~~lg~~~p~gVLL~GPPGTGKT~LArAIA~el~~-------pfi~is----~s 399 (597)
++++.+.++..+.+...+. ..++++|+||||||||++|+++|..+.. .++.++ ..
T Consensus 174 l~d~~i~e~~le~l~~~L~--------------~~~~iil~GppGtGKT~lA~~la~~l~~~~~~~~v~~VtFHpsySYe 239 (459)
T PRK11331 174 LNDLFIPETTIETILKRLT--------------IKKNIILQGPPGVGKTFVARRLAYLLTGEKAPQRVNMVQFHQSYSYE 239 (459)
T ss_pred hhcccCCHHHHHHHHHHHh--------------cCCCEEEECCCCCCHHHHHHHHHHHhcCCcccceeeEEeecccccHH
Confidence 6677777766555433332 2457999999999999999999987642 122232 23
Q ss_pred hhHHHH--hhcchH----HHHHHHHHHHhc--CCeEEEEcCcchhhhhc--CCcccccchhHHHHHHHHHH--HH--hcC
Q 007575 400 EFVELY--VGMGAS----RVRDLFARAKKE--APSIIFIDEIDAVAKSR--DGRFRIVSNDEREQTLNQLL--TE--MDG 465 (597)
Q Consensus 400 ef~~~~--vG~~e~----~vr~lF~~A~~~--aP~ILfIDEIDaL~~~r--~~~~~~~~~~e~eqtLnqLL--~e--mdg 465 (597)
++++.+ .+.+-. .+.++...|... .|+||+||||+.....+ +.-......+.+.+....-+ .+ .+.
T Consensus 240 DFI~G~rP~~vgy~~~~G~f~~~~~~A~~~p~~~~vliIDEINRani~kiFGel~~lLE~~~rg~~~~v~l~y~e~d~e~ 319 (459)
T PRK11331 240 DFIQGYRPNGVGFRRKDGIFYNFCQQAKEQPEKKYVFIIDEINRANLSKVFGEVMMLMEHDKRGENWSVPLTYSENDEER 319 (459)
T ss_pred HHhcccCCCCCCeEecCchHHHHHHHHHhcccCCcEEEEehhhccCHHHhhhhhhhhccccccccccceeeecccccccc
Confidence 444322 111111 234455666543 58999999998754332 11000000110000000000 01 123
Q ss_pred CCCCCcEEEEEecCCCC----CCChhhhCCCCcceEEEecC
Q 007575 466 FDSNSAVIVLGATNRSD----VLDPALRRPGRFDRVVMVET 502 (597)
Q Consensus 466 ~~~~~~VIVIaaTNrpd----~LD~aLlRpgRFd~~I~v~~ 502 (597)
|..+.++.||||+|..| .+|.||+| ||. .|.+.+
T Consensus 320 f~iP~Nl~IIgTMNt~Drs~~~lD~AlrR--RF~-fi~i~p 357 (459)
T PRK11331 320 FYVPENVYIIGLMNTADRSLAVVDYALRR--RFS-FIDIEP 357 (459)
T ss_pred ccCCCCeEEEEecCccccchhhccHHHHh--hhh-eEEecC
Confidence 55678899999999987 79999999 996 566654
No 192
>COG0606 Predicted ATPase with chaperone activity [Posttranslational modification, protein turnover, chaperones]
Probab=99.09 E-value=4.5e-10 Score=122.10 Aligned_cols=213 Identities=23% Similarity=0.305 Sum_probs=130.9
Q ss_pred CcccccccCChHHHHHHHHHHHHhcChhHHhhcCCCCCCceEEeCCCCChHHHHHHHHHHhcC-----------------
Q 007575 328 TITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAE----------------- 390 (597)
Q Consensus 328 ~vtf~dV~G~de~k~~L~eiv~~l~~p~~~~~lg~~~p~gVLL~GPPGTGKT~LArAIA~el~----------------- 390 (597)
...|.||.|++.+|+.|..... ..+++|++||||||||+||+.+.+-+.
T Consensus 175 ~~D~~DV~GQ~~AKrAleiAAA--------------GgHnLl~~GpPGtGKTmla~Rl~~lLPpls~~E~lE~s~I~s~~ 240 (490)
T COG0606 175 APDFKDVKGQEQAKRALEIAAA--------------GGHNLLLVGPPGTGKTMLASRLPGLLPPLSIPEALEVSAIHSLA 240 (490)
T ss_pred CcchhhhcCcHHHHHHHHHHHh--------------cCCcEEEecCCCCchHHhhhhhcccCCCCChHHHHHHHHHhhhc
Confidence 4689999999999999887754 345799999999999999999876431
Q ss_pred ------------CCeeeechhhhHHHHhhcchHHHHHHHHHHHhcCCeEEEEcCcchhhhhcCCcccccchhHHHHHHHH
Q 007575 391 ------------VPFISCSASEFVELYVGMGASRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQ 458 (597)
Q Consensus 391 ------------~pfi~is~sef~~~~vG~~e~~vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~eqtLnq 458 (597)
.||..-+.+.-....+|.+...--.-+..|.. .||||||+-.. .+++|+.
T Consensus 241 g~~~~~~~~~~~rPFr~PHHsaS~~aLvGGG~~p~PGeIsLAH~---GVLFLDElpef---------------~~~iLe~ 302 (490)
T COG0606 241 GDLHEGCPLKIHRPFRAPHHSASLAALVGGGGVPRPGEISLAHN---GVLFLDELPEF---------------KRSILEA 302 (490)
T ss_pred ccccccCccceeCCccCCCccchHHHHhCCCCCCCCCceeeecC---CEEEeeccchh---------------hHHHHHH
Confidence 12222111111111222221111111222322 39999998543 2468888
Q ss_pred HHHHhcCCC-----------CCCcEEEEEecCCC-----------------------CCCChhhhCCCCcceEEEecCCC
Q 007575 459 LLTEMDGFD-----------SNSAVIVLGATNRS-----------------------DVLDPALRRPGRFDRVVMVETPD 504 (597)
Q Consensus 459 LL~emdg~~-----------~~~~VIVIaaTNrp-----------------------d~LD~aLlRpgRFd~~I~v~~Pd 504 (597)
|-+-|+.-. -...+.+|+++|.. ..|...+++ |+|..+.++.++
T Consensus 303 LR~PLE~g~i~IsRa~~~v~ypa~Fqlv~AmNpcpcG~~~~~~~~C~c~~~~~~~Y~~klSgp~lD--RiDl~vev~~~~ 380 (490)
T COG0606 303 LREPLENGKIIISRAGSKVTYPARFQLVAAMNPCPCGNLGAPLRRCPCSPRQIKRYLNKLSGPFLD--RIDLMVEVPRLS 380 (490)
T ss_pred HhCccccCcEEEEEcCCeeEEeeeeEEhhhcCCCCccCCCCCCCCcCCCHHHHHHHHHHhhHHHHh--hhhheecccCCC
Confidence 887776321 13467888899863 123455666 999999998876
Q ss_pred HHHH--------------HHHHHHHH----hcCCCCCCCCC----------------CHHHHHHhCCCCCHHHHHHHHHH
Q 007575 505 KIGR--------------EAILKVHV----SKKELPLAKDI----------------DLGDIASMTTGFTGADLANLVNE 550 (597)
Q Consensus 505 ~~eR--------------~eILk~~l----~~~~~~l~~dv----------------dl~~LA~~t~G~SgaDL~~Lv~e 550 (597)
..++ ..+++.+- +.........+ ++..-+-..-++|.+....+++-
T Consensus 381 ~~e~~~~~~~~ess~~v~~rVa~AR~~Q~~R~~~~~~Na~l~~~~l~k~~~L~~~~~~~L~~al~~~~lS~R~~~rILKv 460 (490)
T COG0606 381 AGELIRQVPTGESSAGVRERVAKAREAQIARAGRIGINAELSEEALRKFCALQREDADLLKAALERLGLSARAYHRILKV 460 (490)
T ss_pred HHHhhcCCCCCCCcHHHHHHHHHHHHHHHHHhhccCcchhcCHHHHHHhcccCHhHHHHHHHHHHhcchhHHHHHHHHHH
Confidence 3332 11221111 11111011111 12222334446788889999999
Q ss_pred HHHHHHhcCCCcccHHHHHHHHHH
Q 007575 551 AALLAGRLNKVVVEKIDFIHAVER 574 (597)
Q Consensus 551 Aal~A~r~~~~~It~~d~~~Al~~ 574 (597)
|..+|...+...|...|+.+|+.-
T Consensus 461 arTiADL~g~~~i~~~hl~eAi~y 484 (490)
T COG0606 461 ARTIADLEGSEQIERSHLAEAISY 484 (490)
T ss_pred HhhhhcccCcchhhHHHHHHHHhh
Confidence 999999999999999999999864
No 193
>KOG2227 consensus Pre-initiation complex, subunit CDC6, AAA+ superfamily ATPase [Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=99.09 E-value=1.9e-09 Score=116.49 Aligned_cols=240 Identities=19% Similarity=0.202 Sum_probs=159.2
Q ss_pred cccCChHHHHHHHHHHHHhcChhHHhhcCCCCCCceEEeCCCCChHHHHHHHHHHhc-----CCCeeeechhhhHH----
Q 007575 333 DVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEA-----EVPFISCSASEFVE---- 403 (597)
Q Consensus 333 dV~G~de~k~~L~eiv~~l~~p~~~~~lg~~~p~gVLL~GPPGTGKT~LArAIA~el-----~~pfi~is~sef~~---- 403 (597)
.+.|.+..+..+++++..-. ...-+..+++.|.||||||.+...+.... ....++++|..+-+
T Consensus 151 ~l~gRe~e~~~v~~F~~~hl--------e~~t~gSlYVsG~PGtgkt~~l~rvl~~~~~~~~~~~~v~inc~sl~~~~ai 222 (529)
T KOG2227|consen 151 TLKGRELEMDIVREFFSLHL--------ELNTSGSLYVSGQPGTGKTALLSRVLDSLSKSSKSPVTVYINCTSLTEASAI 222 (529)
T ss_pred CccchHHHHHHHHHHHHhhh--------hcccCcceEeeCCCCcchHHHHHHHHHhhhhhcccceeEEEeeccccchHHH
Confidence 47788888777777765422 23456789999999999999998776543 22447777764311
Q ss_pred ------HH----hhcch-HHHHHHHHHHH-hc-CCeEEEEcCcchhhhhcCCcccccchhHHHHHHHHHHHHhcCCCCCC
Q 007575 404 ------LY----VGMGA-SRVRDLFARAK-KE-APSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNS 470 (597)
Q Consensus 404 ------~~----vG~~e-~~vr~lF~~A~-~~-aP~ILfIDEIDaL~~~r~~~~~~~~~~e~eqtLnqLL~emdg~~~~~ 470 (597)
.+ ++.+. ......|.... .. .+-++++||+|.|+...+. ++..|. ++.. -.+.
T Consensus 223 F~kI~~~~~q~~~s~~~~~~~~~~~~~h~~q~k~~~llVlDEmD~L~tr~~~------------vLy~lF-ewp~-lp~s 288 (529)
T KOG2227|consen 223 FKKIFSSLLQDLVSPGTGMQHLEKFEKHTKQSKFMLLLVLDEMDHLITRSQT------------VLYTLF-EWPK-LPNS 288 (529)
T ss_pred HHHHHHHHHHHhcCCchhHHHHHHHHHHHhcccceEEEEechhhHHhhcccc------------eeeeeh-hccc-CCcc
Confidence 11 12221 12223333332 22 3669999999999854432 222222 2222 2357
Q ss_pred cEEEEEecCCCCCCChhhhC----CCCcceEEEecCCCHHHHHHHHHHHHhcCCCCCCCCCCHHHHHHhCCCCCH--HHH
Q 007575 471 AVIVLGATNRSDVLDPALRR----PGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTTGFTG--ADL 544 (597)
Q Consensus 471 ~VIVIaaTNrpd~LD~aLlR----pgRFd~~I~v~~Pd~~eR~eILk~~l~~~~~~l~~dvdl~~LA~~t~G~Sg--aDL 544 (597)
.+++|+..|..|.-|..|-| .+.-...+.|++++.++..+||...+.........+..++.+|+...|.|| +.+
T Consensus 289 r~iLiGiANslDlTdR~LprL~~~~~~~P~~l~F~PYTk~qI~~Il~~rl~~~~t~~~~~~Aie~~ArKvaa~SGDlRka 368 (529)
T KOG2227|consen 289 RIILIGIANSLDLTDRFLPRLNLDLTIKPKLLVFPPYTKDQIVEILQQRLSEESTSIFLNAAIELCARKVAAPSGDLRKA 368 (529)
T ss_pred eeeeeeehhhhhHHHHHhhhhhhccCCCCceeeecCCCHHHHHHHHHHHHhcccccccchHHHHHHHHHhccCchhHHHH
Confidence 79999999988776665533 223456889999999999999999997653333333457888999999888 445
Q ss_pred HHHHHHHHHHHHhcCC----------------CcccHHHHHHHHHHHhccccccccc-cchhhhhhc
Q 007575 545 ANLVNEAALLAGRLNK----------------VVVEKIDFIHAVERSIAVSLSLSLS-LSLQASISL 594 (597)
Q Consensus 545 ~~Lv~eAal~A~r~~~----------------~~It~~d~~~Al~~v~~g~~k~s~~-ls~q~~l~l 594 (597)
-.+|+.|..+|....+ ..|..+++..++.++-..+..+++. +..|..+++
T Consensus 369 Ldv~R~aiEI~E~e~r~~~~~~l~~~~~p~~~~~v~~~~va~viSk~~~s~~~~s~~slplqqkiil 435 (529)
T KOG2227|consen 369 LDVCRRAIEIAEIEKRKILDDPLSPGTSPEKKKKVGVEHVAAVISKVDGSPSARSRESLPLQQKIIL 435 (529)
T ss_pred HHHHHHHHHHHHHHHhhccccCCCCCCCcccccccchHHHHHHhhhhccChhhhhhhhcCcccchhH
Confidence 5677777777755432 3466899999999999888877766 677766665
No 194
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=99.08 E-value=1.5e-09 Score=115.14 Aligned_cols=154 Identities=18% Similarity=0.185 Sum_probs=107.7
Q ss_pred ccccccC-ChHHHHHHHHHHHHhcChhHHhhcCCCCCCceEEeCCCCChHHHHHHHHHHhcCCCe-------eee-chh-
Q 007575 330 TFADVAG-VDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPF-------ISC-SAS- 399 (597)
Q Consensus 330 tf~dV~G-~de~k~~L~eiv~~l~~p~~~~~lg~~~p~gVLL~GPPGTGKT~LArAIA~el~~pf-------i~i-s~s- 399 (597)
.|++|+| ++.+++.|...+. ..+.|..+||+||+|+||+++|+++|+.+.++- -.+ +|.
T Consensus 3 ~~~~i~~~q~~~~~~L~~~~~-----------~~~l~ha~Lf~G~~G~gk~~~a~~la~~l~c~~~~~~~~cg~C~~c~~ 71 (329)
T PRK08058 3 TWEQLTALQPVVVKMLQNSIA-----------KNRLSHAYLFEGAKGTGKKATALWLAKSLFCLERNGVEPCGTCTNCKR 71 (329)
T ss_pred cHHHHHhhHHHHHHHHHHHHH-----------cCCCCceEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCcCHHHHH
Confidence 5888999 8889888888875 235677789999999999999999999864321 000 000
Q ss_pred -------hhHHH-Hhh--cchHHHHHHHHHHHh----cCCeEEEEcCcchhhhhcCCcccccchhHHHHHHHHHHHHhcC
Q 007575 400 -------EFVEL-YVG--MGASRVRDLFARAKK----EAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDG 465 (597)
Q Consensus 400 -------ef~~~-~vG--~~e~~vr~lF~~A~~----~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~eqtLnqLL~emdg 465 (597)
++.-. ..| .+...++++.+.+.. ....|++|||+|.+.. ...|.||..|+.
T Consensus 72 ~~~~~hpD~~~i~~~~~~i~id~ir~l~~~~~~~~~~~~~kvviI~~a~~~~~---------------~a~NaLLK~LEE 136 (329)
T PRK08058 72 IDSGNHPDVHLVAPDGQSIKKDQIRYLKEEFSKSGVESNKKVYIIEHADKMTA---------------SAANSLLKFLEE 136 (329)
T ss_pred HhcCCCCCEEEeccccccCCHHHHHHHHHHHhhCCcccCceEEEeehHhhhCH---------------HHHHHHHHHhcC
Confidence 11000 001 123466776665542 2346999999998853 345899999985
Q ss_pred CCCCCcEEEEEecCCCCCCChhhhCCCCcceEEEecCCCHHHHHHHHHH
Q 007575 466 FDSNSAVIVLGATNRSDVLDPALRRPGRFDRVVMVETPDKIGREAILKV 514 (597)
Q Consensus 466 ~~~~~~VIVIaaTNrpd~LD~aLlRpgRFd~~I~v~~Pd~~eR~eILk~ 514 (597)
++..+++|.+|+.++.|.+.+++ |.. ++++.+|+.++..+.++.
T Consensus 137 --Pp~~~~~Il~t~~~~~ll~TIrS--Rc~-~i~~~~~~~~~~~~~L~~ 180 (329)
T PRK08058 137 --PSGGTTAILLTENKHQILPTILS--RCQ-VVEFRPLPPESLIQRLQE 180 (329)
T ss_pred --CCCCceEEEEeCChHhCcHHHHh--hce-eeeCCCCCHHHHHHHHHH
Confidence 44566777788888899999998 774 889999998887777753
No 195
>TIGR02915 PEP_resp_reg putative PEP-CTERM system response regulator. Members of this protein family share full-length homology with (but do not include) the acetoacetate metabolism regulatory protein AtoC. These proteins have a Fis family DNA binding sequence (pfam02954), a response regulator receiver domain (pfam00072), and sigma-54 interaction domain (pfam00158).
Probab=99.08 E-value=3.7e-10 Score=123.70 Aligned_cols=204 Identities=19% Similarity=0.255 Sum_probs=126.2
Q ss_pred ccccccCChHHHHHHHHHHHHhcChhHHhhcCCCCCCceEEeCCCCChHHHHHHHHHHhc---CCCeeeechhhhHHHHh
Q 007575 330 TFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEA---EVPFISCSASEFVELYV 406 (597)
Q Consensus 330 tf~dV~G~de~k~~L~eiv~~l~~p~~~~~lg~~~p~gVLL~GPPGTGKT~LArAIA~el---~~pfi~is~sef~~~~v 406 (597)
.+.+++|.....+.+.+.+..+. ....+++|+|++||||+++|+++.... +.||+.++|..+.+...
T Consensus 137 ~~~~lig~s~~~~~l~~~i~~~a----------~~~~~vli~Ge~GtGK~~lA~~ih~~s~~~~~~~v~v~c~~~~~~~~ 206 (445)
T TIGR02915 137 ALRGLITSSPGMQKICRTIEKIA----------PSDITVLLLGESGTGKEVLARALHQLSDRKDKRFVAINCAAIPENLL 206 (445)
T ss_pred cccceeecCHHHHHHHHHHHHHh----------CCCCCEEEECCCCcCHHHHHHHHHHhCCcCCCCeEEEECCCCChHHH
Confidence 45578888887777766665432 223469999999999999999998764 57999999987633211
Q ss_pred -----hcc-------hHHHHHHHHHHHhcCCeEEEEcCcchhhhhcCCcccccchhHHHHHHHHHHHHhcCCC-----C-
Q 007575 407 -----GMG-------ASRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFD-----S- 468 (597)
Q Consensus 407 -----G~~-------e~~vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~eqtLnqLL~emdg~~-----~- 468 (597)
|.. ......+|..|. ..+|||||||.|....+ ..|+..++.-. .
T Consensus 207 ~~~lfg~~~~~~~~~~~~~~g~~~~a~---~gtl~l~~i~~l~~~~q---------------~~l~~~l~~~~~~~~~~~ 268 (445)
T TIGR02915 207 ESELFGYEKGAFTGAVKQTLGKIEYAH---GGTLFLDEIGDLPLNLQ---------------AKLLRFLQERVIERLGGR 268 (445)
T ss_pred HHHhcCCCCCCcCCCccCCCCceeECC---CCEEEEechhhCCHHHH---------------HHHHHHHhhCeEEeCCCC
Confidence 110 011112233332 34999999999875432 44454443211 1
Q ss_pred ---CCcEEEEEecCCC-------CCCChhhhCCCCcceEEEecCCCHHHHHH----HHHHHHhc----CC---CCCCCCC
Q 007575 469 ---NSAVIVLGATNRS-------DVLDPALRRPGRFDRVVMVETPDKIGREA----ILKVHVSK----KE---LPLAKDI 527 (597)
Q Consensus 469 ---~~~VIVIaaTNrp-------d~LD~aLlRpgRFd~~I~v~~Pd~~eR~e----ILk~~l~~----~~---~~l~~dv 527 (597)
...+.+|++|+.. ..+.+.|.. |+. .+.+..|...+|.+ +++.++.+ .+ ..+.++
T Consensus 269 ~~~~~~~rii~~~~~~l~~~~~~~~~~~~L~~--~l~-~~~i~lPpLr~R~~Di~~l~~~~l~~~~~~~~~~~~~~~~~- 344 (445)
T TIGR02915 269 EEIPVDVRIVCATNQDLKRMIAEGTFREDLFY--RIA-EISITIPPLRSRDGDAVLLANAFLERFARELKRKTKGFTDD- 344 (445)
T ss_pred ceeeeceEEEEecCCCHHHHHHcCCccHHHHH--Hhc-cceecCCCchhchhhHHHHHHHHHHHHHHHhCCCCCCCCHH-
Confidence 2357888888765 234455544 453 46777788877764 33333332 12 123322
Q ss_pred CHHHHHHhCCCCCHHHHHHHHHHHHHHHHhcCCCcccHHHH
Q 007575 528 DLGDIASMTTGFTGADLANLVNEAALLAGRLNKVVVEKIDF 568 (597)
Q Consensus 528 dl~~LA~~t~G~SgaDL~~Lv~eAal~A~r~~~~~It~~d~ 568 (597)
.+..|..+.+..+.++|++++.+|+..+ ....|+.+|+
T Consensus 345 a~~~L~~~~wpgNvreL~~~i~~a~~~~---~~~~i~~~~l 382 (445)
T TIGR02915 345 ALRALEAHAWPGNVRELENKVKRAVIMA---EGNQITAEDL 382 (445)
T ss_pred HHHHHHhCCCCChHHHHHHHHHHHHHhC---CCCcccHHHc
Confidence 3666777776667899999999998765 3445666665
No 196
>COG3604 FhlA Transcriptional regulator containing GAF, AAA-type ATPase, and DNA binding domains [Transcription / Signal transduction mechanisms]
Probab=99.06 E-value=4.5e-10 Score=122.21 Aligned_cols=197 Identities=26% Similarity=0.364 Sum_probs=128.8
Q ss_pred CCcccccccCChHHHHHHHHHHHHhcChhHHhhcCCCCCCceEEeCCCCChHHHHHHHHHHhc---CCCeeeechhhhHH
Q 007575 327 DTITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEA---EVPFISCSASEFVE 403 (597)
Q Consensus 327 ~~vtf~dV~G~de~k~~L~eiv~~l~~p~~~~~lg~~~p~gVLL~GPPGTGKT~LArAIA~el---~~pfi~is~sef~~ 403 (597)
+...+.+++|...+..++.+.|+.+... ...|||.|.+||||..+||+|-... +.||+.+||..+.+
T Consensus 218 ~~~~~~~iIG~S~am~~ll~~i~~VA~S----------d~tVLi~GETGtGKElvAraIH~~S~R~~kPfV~~NCAAlPe 287 (550)
T COG3604 218 VVLEVGGIIGRSPAMRQLLKEIEVVAKS----------DSTVLIRGETGTGKELVARAIHQLSPRRDKPFVKLNCAALPE 287 (550)
T ss_pred hhcccccceecCHHHHHHHHHHHHHhcC----------CCeEEEecCCCccHHHHHHHHHhhCcccCCCceeeeccccch
Confidence 3678889999999999999999876443 3479999999999999999998765 68999999997765
Q ss_pred HH-----hhcch-------HHHHHHHHHHHhcCCeEEEEcCcchhhhhcCCcccccchhHHHHHHHHHHHHhc-----CC
Q 007575 404 LY-----VGMGA-------SRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMD-----GF 466 (597)
Q Consensus 404 ~~-----vG~~e-------~~vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~eqtLnqLL~emd-----g~ 466 (597)
.. .|.-. ..-+.-|+.|..+ .||+|||..|.-.-+ ..||..++ ..
T Consensus 288 sLlESELFGHeKGAFTGA~~~r~GrFElAdGG---TLFLDEIGelPL~lQ---------------aKLLRvLQegEieRv 349 (550)
T COG3604 288 SLLESELFGHEKGAFTGAINTRRGRFELADGG---TLFLDEIGELPLALQ---------------AKLLRVLQEGEIERV 349 (550)
T ss_pred HHHHHHHhcccccccccchhccCcceeecCCC---eEechhhccCCHHHH---------------HHHHHHHhhcceeec
Confidence 42 12100 1112334544444 899999988764432 23343332 22
Q ss_pred CC----CCcEEEEEecCCCCCCChhhhCCCCcce-------EEEecCCCHHHHHH----HHHHHHh----cCC---CCCC
Q 007575 467 DS----NSAVIVLGATNRSDVLDPALRRPGRFDR-------VVMVETPDKIGREA----ILKVHVS----KKE---LPLA 524 (597)
Q Consensus 467 ~~----~~~VIVIaaTNrpd~LD~aLlRpgRFd~-------~I~v~~Pd~~eR~e----ILk~~l~----~~~---~~l~ 524 (597)
.+ +-.|-||||||+. |-.+ .+.|+|-. ++.+..|...+|.+ +.+.+++ +.+ +.+.
T Consensus 350 G~~r~ikVDVRiIAATNRD--L~~~-V~~G~FRaDLYyRLsV~Pl~lPPLRER~~DIplLA~~Fle~~~~~~gr~~l~ls 426 (550)
T COG3604 350 GGDRTIKVDVRVIAATNRD--LEEM-VRDGEFRADLYYRLSVFPLELPPLRERPEDIPLLAGYFLEKFRRRLGRAILSLS 426 (550)
T ss_pred CCCceeEEEEEEEeccchh--HHHH-HHcCcchhhhhhcccccccCCCCcccCCccHHHHHHHHHHHHHHhcCCcccccC
Confidence 22 2358899999984 3222 23355532 44555688777753 2222222 222 2233
Q ss_pred CCCCHHHHHHhCCCCCHHHHHHHHHHHHHHH
Q 007575 525 KDIDLGDIASMTTGFTGADLANLVNEAALLA 555 (597)
Q Consensus 525 ~dvdl~~LA~~t~G~SgaDL~~Lv~eAal~A 555 (597)
++ .++.|..+...-+.++|+|++++|++.|
T Consensus 427 ~~-Al~~L~~y~wPGNVRELen~veRavlla 456 (550)
T COG3604 427 AE-ALELLSSYEWPGNVRELENVVERAVLLA 456 (550)
T ss_pred HH-HHHHHHcCCCCCcHHHHHHHHHHHHHHh
Confidence 33 2666666665567799999999999988
No 197
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=99.04 E-value=2.4e-09 Score=113.73 Aligned_cols=152 Identities=19% Similarity=0.319 Sum_probs=105.0
Q ss_pred CCCCCceEEeCCCCChHHHHHHHHHHhcCCC-------eeee-chh--------hhHHHH-----hhcchHHHHHHHHHH
Q 007575 362 ARPPRGVLLVGLPGTGKTLLAKAVAGEAEVP-------FISC-SAS--------EFVELY-----VGMGASRVRDLFARA 420 (597)
Q Consensus 362 ~~~p~gVLL~GPPGTGKT~LArAIA~el~~p-------fi~i-s~s--------ef~~~~-----vG~~e~~vr~lF~~A 420 (597)
.+.|..+||+||+|+|||++|+++|..+.+. .-.| +|. ++.... ...+...+|++.+.+
T Consensus 19 ~r~~ha~Lf~G~~G~GK~~~A~~~A~~llC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~~~~~~~~i~id~iR~l~~~~ 98 (328)
T PRK05707 19 GRHPHAYLLHGPAGIGKRALAERLAAALLCEAPQGGGACGSCKGCQLLRAGSHPDNFVLEPEEADKTIKVDQVRELVSFV 98 (328)
T ss_pred CCcceeeeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCEEEEeccCCCCCCCHHHHHHHHHHH
Confidence 4567889999999999999999999987542 1000 111 111000 012346778777666
Q ss_pred Hh----cCCeEEEEcCcchhhhhcCCcccccchhHHHHHHHHHHHHhcCCCCCCcEEEEEecCCCCCCChhhhCCCCcce
Q 007575 421 KK----EAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATNRSDVLDPALRRPGRFDR 496 (597)
Q Consensus 421 ~~----~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~eqtLnqLL~emdg~~~~~~VIVIaaTNrpd~LD~aLlRpgRFd~ 496 (597)
.. ....|++|||+|.+.. ...|.||..|++ ++.++++|.+|+.++.|.|.+++ |+.
T Consensus 99 ~~~~~~~~~kv~iI~~a~~m~~---------------~aaNaLLK~LEE--Pp~~~~fiL~t~~~~~ll~TI~S--Rc~- 158 (328)
T PRK05707 99 VQTAQLGGRKVVLIEPAEAMNR---------------NAANALLKSLEE--PSGDTVLLLISHQPSRLLPTIKS--RCQ- 158 (328)
T ss_pred hhccccCCCeEEEECChhhCCH---------------HHHHHHHHHHhC--CCCCeEEEEEECChhhCcHHHHh--hce-
Confidence 53 3356999999999863 355999999985 44678888999999999999999 885
Q ss_pred EEEecCCCHHHHHHHHHHHHhcCCCCCCCCCCHHHHHHhCCC
Q 007575 497 VVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTTG 538 (597)
Q Consensus 497 ~I~v~~Pd~~eR~eILk~~l~~~~~~l~~dvdl~~LA~~t~G 538 (597)
.+.|.+|+.++..+.|...... ..+.+...++....|
T Consensus 159 ~~~~~~~~~~~~~~~L~~~~~~-----~~~~~~~~~l~la~G 195 (328)
T PRK05707 159 QQACPLPSNEESLQWLQQALPE-----SDERERIELLTLAGG 195 (328)
T ss_pred eeeCCCcCHHHHHHHHHHhccc-----CChHHHHHHHHHcCC
Confidence 6899999999888888765311 112234455666665
No 198
>COG1219 ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=99.04 E-value=5.6e-10 Score=115.64 Aligned_cols=128 Identities=34% Similarity=0.505 Sum_probs=88.0
Q ss_pred cccCChHHHHHHHHHHHHhcChhHHhhcC-------CC-CCCceEEeCCCCChHHHHHHHHHHhcCCCeeeechhhhHHH
Q 007575 333 DVAGVDEAKEELEEIVEFLRSPDKYIRLG-------AR-PPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFVEL 404 (597)
Q Consensus 333 dV~G~de~k~~L~eiv~~l~~p~~~~~lg-------~~-~p~gVLL~GPPGTGKT~LArAIA~el~~pfi~is~sef~~~ 404 (597)
-|+|++.+|+.|.-.|.. .|.++. .. ...+|||.||.|+|||+||+.+|..+++||...++..+-+.
T Consensus 62 YVIGQe~AKKvLsVAVYN-----HYKRl~~~~~~~dvEL~KSNILLiGPTGsGKTlLAqTLAk~LnVPFaiADATtLTEA 136 (408)
T COG1219 62 YVIGQEQAKKVLSVAVYN-----HYKRLNNKEDNDDVELSKSNILLIGPTGSGKTLLAQTLAKILNVPFAIADATTLTEA 136 (408)
T ss_pred heecchhhhceeeeeehh-----HHHHHhccCCCCceeeeeccEEEECCCCCcHHHHHHHHHHHhCCCeeeccccchhhc
Confidence 489999999887665532 111111 11 23579999999999999999999999999999999988764
Q ss_pred -HhhcchHHH-HHHHHHHH----hcCCeEEEEcCcchhhhhcCCcccccchhHHHHHHHHHHHHhcCC
Q 007575 405 -YVGMGASRV-RDLFARAK----KEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGF 466 (597)
Q Consensus 405 -~vG~~e~~v-r~lF~~A~----~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~eqtLnqLL~emdg~ 466 (597)
|+|+.-.++ ..++..|. +....||||||||.+.++..+.+ ..-+=.-+.+...||..|+|-
T Consensus 137 GYVGEDVENillkLlqaadydV~rAerGIIyIDEIDKIarkSeN~S-ITRDVSGEGVQQALLKiiEGT 203 (408)
T COG1219 137 GYVGEDVENILLKLLQAADYDVERAERGIIYIDEIDKIARKSENPS-ITRDVSGEGVQQALLKIIEGT 203 (408)
T ss_pred cccchhHHHHHHHHHHHcccCHHHHhCCeEEEechhhhhccCCCCC-cccccCchHHHHHHHHHHcCc
Confidence 888865554 33433321 12234999999999998765431 111112255667788888864
No 199
>COG1220 HslU ATP-dependent protease HslVU (ClpYQ), ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=99.02 E-value=1.8e-09 Score=112.65 Aligned_cols=83 Identities=30% Similarity=0.436 Sum_probs=63.8
Q ss_pred eEEEEcCcchhhhhcCCcccccchhHHHHHHHHHHHHhcCCC--------CCCcEEEEEec----CCCCCCChhhhCCCC
Q 007575 426 SIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFD--------SNSAVIVLGAT----NRSDVLDPALRRPGR 493 (597)
Q Consensus 426 ~ILfIDEIDaL~~~r~~~~~~~~~~e~eqtLnqLL~emdg~~--------~~~~VIVIaaT----Nrpd~LD~aLlRpgR 493 (597)
.||||||||.++.+.+.+ +.+-.++.+...||-.++|.. ....+++||+. ..|.+|-|.|. ||
T Consensus 252 GIvFIDEIDKIa~~~~~g---~~dvSREGVQRDlLPlvEGstV~TKyG~VkTdHILFIasGAFh~sKPSDLiPELQ--GR 326 (444)
T COG1220 252 GIVFIDEIDKIAKRGGSG---GPDVSREGVQRDLLPLVEGSTVSTKYGPVKTDHILFIASGAFHVAKPSDLIPELQ--GR 326 (444)
T ss_pred CeEEEehhhHHHhcCCCC---CCCcchhhhcccccccccCceeeccccccccceEEEEecCceecCChhhcChhhc--CC
Confidence 499999999999776422 224456777788888888643 24568888876 45888999995 49
Q ss_pred cceEEEecCCCHHHHHHHHH
Q 007575 494 FDRVVMVETPDKIGREAILK 513 (597)
Q Consensus 494 Fd~~I~v~~Pd~~eR~eILk 513 (597)
|.-.|++...+.++...||.
T Consensus 327 fPIRVEL~~Lt~~Df~rILt 346 (444)
T COG1220 327 FPIRVELDALTKEDFERILT 346 (444)
T ss_pred CceEEEcccCCHHHHHHHHc
Confidence 99999999999998887764
No 200
>COG1239 ChlI Mg-chelatase subunit ChlI [Coenzyme metabolism]
Probab=99.02 E-value=6e-09 Score=111.99 Aligned_cols=221 Identities=27% Similarity=0.382 Sum_probs=136.1
Q ss_pred CcccccccCChHHHHHHHHHHHHhcChhHHhhcCCCCCCceEEeCCCCChHHHHHHHHHHhc-------CCCeeee----
Q 007575 328 TITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEA-------EVPFISC---- 396 (597)
Q Consensus 328 ~vtf~dV~G~de~k~~L~eiv~~l~~p~~~~~lg~~~p~gVLL~GPPGTGKT~LArAIA~el-------~~pfi~i---- 396 (597)
...|.-++|++..|..|--.. -+| .-.|+||.|+.|||||+++||||.-+ |+||-+-
T Consensus 13 ~~pf~aivGqd~lk~aL~l~a---v~P---------~iggvLI~G~kGtaKSt~~Rala~LLp~~~~V~gc~f~cdP~~P 80 (423)
T COG1239 13 NLPFTAIVGQDPLKLALGLNA---VDP---------QIGGALIAGEKGTAKSTLARALADLLPEIEVVIGCPFNCDPDDP 80 (423)
T ss_pred ccchhhhcCchHHHHHHhhhh---ccc---------ccceeEEecCCCccHHHHHHHHHHhCCccceecCCCCCCCCCCh
Confidence 567888999999877764331 122 22489999999999999999999976 3444221
Q ss_pred --chhh-------------------hHHHHhhcchHHHH------H------------HHHHHHhcCCeEEEEcCcchhh
Q 007575 397 --SASE-------------------FVELYVGMGASRVR------D------------LFARAKKEAPSIIFIDEIDAVA 437 (597)
Q Consensus 397 --s~se-------------------f~~~~vG~~e~~vr------~------------lF~~A~~~aP~ILfIDEIDaL~ 437 (597)
.|.+ |+..-.|.++.++- . ++.+|. ..||+|||+..|.
T Consensus 81 ~~~c~~c~~k~~e~~~~~~~~r~v~~v~lPl~ateDrvvGslDi~ka~~~g~~af~PGlLa~An---RGIlYvDEvnlL~ 157 (423)
T COG1239 81 EEMCDECRAKGDELEWLPREKRKVPFVALPLGATEDRLVGSLDIEKALEEGPKAFQPGLLARAN---RGILYVDEVNLLD 157 (423)
T ss_pred hhhhHHHHhhccccccccccceecceecCCCccchhhhccccCHHHHHhcCccccCCcchhhcc---CCEEEEecccccc
Confidence 1111 22222344444221 1 122222 2399999997764
Q ss_pred hhcCCcccccchhHHHHHHHHHHHHhcC-----------CCCCCcEEEEEecCCC-CCCChhhhCCCCcceEEEecCC-C
Q 007575 438 KSRDGRFRIVSNDEREQTLNQLLTEMDG-----------FDSNSAVIVLGATNRS-DVLDPALRRPGRFDRVVMVETP-D 504 (597)
Q Consensus 438 ~~r~~~~~~~~~~e~eqtLnqLL~emdg-----------~~~~~~VIVIaaTNrp-d~LD~aLlRpgRFd~~I~v~~P-d 504 (597)
++.++.||..+.. +.....+++|+|.|.. ..|-|.|+. ||...|.+..| +
T Consensus 158 ---------------d~lvd~LLd~aaeG~n~vereGisi~hpa~fvligTmNPEeGeLrpqLlD--Rfg~~v~~~~~~~ 220 (423)
T COG1239 158 ---------------DHLVDALLDVAAEGVNDVEREGISIRHPARFLLIGTMNPEEGELRPQLLD--RFGLEVDTHYPLD 220 (423)
T ss_pred ---------------HHHHHHHHHHHHhCCceeeeCceeeccCccEEEEeecCccccccchhhHh--hhcceeeccCCCC
Confidence 3456777776543 2335689999999986 478899998 99999999876 6
Q ss_pred HHHHHHHHHHHHhcCCCC-----------------------CCCCCC-----HHHHHHhC--CCCCH-HHHHHHHHHHHH
Q 007575 505 KIGREAILKVHVSKKELP-----------------------LAKDID-----LGDIASMT--TGFTG-ADLANLVNEAAL 553 (597)
Q Consensus 505 ~~eR~eILk~~l~~~~~~-----------------------l~~dvd-----l~~LA~~t--~G~Sg-aDL~~Lv~eAal 553 (597)
.++|.+|++..+.....| +-+++. ...++..+ .+..| +.-.-+++-|..
T Consensus 221 ~~~rv~Ii~r~~~f~~~Pe~f~~~~~~~~~~lR~~ii~ar~~l~~V~l~~~~~~~ia~~~~~~~v~g~radi~~~r~a~a 300 (423)
T COG1239 221 LEERVEIIRRRLAFEAVPEAFLEKYADAQRALRARIIAARSLLSEVELDDDAETKIAELCARLAVDGHRADIVVVRAAKA 300 (423)
T ss_pred HHHHHHHHHHHHHhhcCcHHHHHHHHHHHHHHHHHHHHHHhccccccCcHHHHHHHHHHHHHhccCCCchhhHHHHHHHH
Confidence 788888887765421100 000110 11222111 01111 112234445666
Q ss_pred HHHhcCCCcccHHHHHHHHHHHhcccc
Q 007575 554 LAGRLNKVVVEKIDFIHAVERSIAVSL 580 (597)
Q Consensus 554 ~A~r~~~~~It~~d~~~Al~~v~~g~~ 580 (597)
+|.-.++..++.+|+++|.+-.+.--.
T Consensus 301 ~aa~~Gr~~v~~~Di~~a~~l~l~hR~ 327 (423)
T COG1239 301 LAALRGRTEVEEEDIREAAELALLHRR 327 (423)
T ss_pred HHHhcCceeeehhhHHHHHhhhhhhhh
Confidence 777789999999999999888755443
No 201
>PRK08116 hypothetical protein; Validated
Probab=99.01 E-value=2.4e-09 Score=110.61 Aligned_cols=156 Identities=18% Similarity=0.231 Sum_probs=87.7
Q ss_pred CcccccccCChHHHHHHHHHHHHhcChhHHhhcCCCCCCceEEeCCCCChHHHHHHHHHHhc---CCCeeeechhhhHHH
Q 007575 328 TITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEA---EVPFISCSASEFVEL 404 (597)
Q Consensus 328 ~vtf~dV~G~de~k~~L~eiv~~l~~p~~~~~lg~~~p~gVLL~GPPGTGKT~LArAIA~el---~~pfi~is~sef~~~ 404 (597)
..+|++..-.+.....+..+..++.+. ... ...+.+++|+|+||||||+||.|+|+++ +.+++.++.+++...
T Consensus 81 ~~tFdnf~~~~~~~~a~~~a~~y~~~~---~~~-~~~~~gl~l~G~~GtGKThLa~aia~~l~~~~~~v~~~~~~~ll~~ 156 (268)
T PRK08116 81 NSTFENFLFDKGSEKAYKIARKYVKKF---EEM-KKENVGLLLWGSVGTGKTYLAACIANELIEKGVPVIFVNFPQLLNR 156 (268)
T ss_pred hcchhcccCChHHHHHHHHHHHHHHHH---Hhh-ccCCceEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEHHHHHHH
Confidence 456776654344333333333333321 111 1234579999999999999999999975 789999999888765
Q ss_pred Hhhc----chHHHHHHHHHHHhcCCeEEEEcCcchhhhhcCCcccccchhHHHHHHHHHHHHhcCCCCCCcEEEEEecCC
Q 007575 405 YVGM----GASRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATNR 480 (597)
Q Consensus 405 ~vG~----~e~~vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~eqtLnqLL~emdg~~~~~~VIVIaaTNr 480 (597)
+... +.....++++... ...+|+|||++... ..+. ....|...++..... +..+|.|||.
T Consensus 157 i~~~~~~~~~~~~~~~~~~l~--~~dlLviDDlg~e~----------~t~~---~~~~l~~iin~r~~~-~~~~IiTsN~ 220 (268)
T PRK08116 157 IKSTYKSSGKEDENEIIRSLV--NADLLILDDLGAER----------DTEW---AREKVYNIIDSRYRK-GLPTIVTTNL 220 (268)
T ss_pred HHHHHhccccccHHHHHHHhc--CCCEEEEecccCCC----------CCHH---HHHHHHHHHHHHHHC-CCCEEEECCC
Confidence 4321 1122233443332 23499999996421 1122 223344444432222 2345667776
Q ss_pred C-CC----CChhhhCCCCc---ceEEEecCCCH
Q 007575 481 S-DV----LDPALRRPGRF---DRVVMVETPDK 505 (597)
Q Consensus 481 p-d~----LD~aLlRpgRF---d~~I~v~~Pd~ 505 (597)
+ +. ++.++.+ |+ ...|.+..||.
T Consensus 221 ~~~eL~~~~~~ri~s--Rl~e~~~~v~~~g~d~ 251 (268)
T PRK08116 221 SLEELKNQYGKRIYD--RILEMCTPVENEGKSY 251 (268)
T ss_pred CHHHHHHHHhHHHHH--HHHHcCEEEEeeCcCh
Confidence 5 33 4666666 53 34566666664
No 202
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=99.00 E-value=1.5e-09 Score=108.38 Aligned_cols=186 Identities=22% Similarity=0.276 Sum_probs=119.3
Q ss_pred cCCCCcccccccCChHHHHHHHHHHHHhcChhHHhhcCCCCCCceEEeCCCCChHHHHHHHHHHhc-C----CCeeeech
Q 007575 324 EQGDTITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEA-E----VPFISCSA 398 (597)
Q Consensus 324 ~~~~~vtf~dV~G~de~k~~L~eiv~~l~~p~~~~~lg~~~p~gVLL~GPPGTGKT~LArAIA~el-~----~pfi~is~ 398 (597)
+...+..++|++|.++..+.|.-+...-. ..+++|.||||||||+-+.++|.++ | --+..++.
T Consensus 19 eKYrP~~l~dIVGNe~tv~rl~via~~gn------------mP~liisGpPG~GKTTsi~~LAr~LLG~~~ke~vLELNA 86 (333)
T KOG0991|consen 19 EKYRPSVLQDIVGNEDTVERLSVIAKEGN------------MPNLIISGPPGTGKTTSILCLARELLGDSYKEAVLELNA 86 (333)
T ss_pred HhhCchHHHHhhCCHHHHHHHHHHHHcCC------------CCceEeeCCCCCchhhHHHHHHHHHhChhhhhHhhhccC
Confidence 44567789999999999999888876322 2369999999999999999999986 3 23455555
Q ss_pred hhhHHHHhhcchHHHH---HHHHHHHhcC----CeEEEEcCcchhhhhcCCcccccchhHHHHHHHHHHHHhcCCCCCCc
Q 007575 399 SEFVELYVGMGASRVR---DLFARAKKEA----PSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSA 471 (597)
Q Consensus 399 sef~~~~vG~~e~~vr---~lF~~A~~~a----P~ILfIDEIDaL~~~r~~~~~~~~~~e~eqtLnqLL~emdg~~~~~~ 471 (597)
++- .+-..+| ..|.+-+-.- -.||++||.|.+....+ ..|-..|+-+.+..
T Consensus 87 Sde------RGIDvVRn~IK~FAQ~kv~lp~grhKIiILDEADSMT~gAQ---------------QAlRRtMEiyS~tt- 144 (333)
T KOG0991|consen 87 SDE------RGIDVVRNKIKMFAQKKVTLPPGRHKIIILDEADSMTAGAQ---------------QALRRTMEIYSNTT- 144 (333)
T ss_pred ccc------cccHHHHHHHHHHHHhhccCCCCceeEEEeeccchhhhHHH---------------HHHHHHHHHHcccc-
Confidence 542 1223333 3344433222 24999999999863321 22333344334433
Q ss_pred EEEEEecCCCCCCChhhhCCCCcceEEEecCCCHHHHHHHHHHHHhcCCCCCCCCCCHHHHHHhCCCCCHHHHHHHHHHH
Q 007575 472 VIVLGATNRSDVLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTTGFTGADLANLVNEA 551 (597)
Q Consensus 472 VIVIaaTNrpd~LD~aLlRpgRFd~~I~v~~Pd~~eR~eILk~~l~~~~~~l~~dvdl~~LA~~t~G~SgaDL~~Lv~eA 551 (597)
-+..++|..+.+-+.+.+ |+- .+.+...+..+...-+....+..+++..++ .++.+.-..+| |+++.+|..
T Consensus 145 -RFalaCN~s~KIiEPIQS--RCA-iLRysklsd~qiL~Rl~~v~k~Ekv~yt~d-gLeaiifta~G----DMRQalNnL 215 (333)
T KOG0991|consen 145 -RFALACNQSEKIIEPIQS--RCA-ILRYSKLSDQQILKRLLEVAKAEKVNYTDD-GLEAIIFTAQG----DMRQALNNL 215 (333)
T ss_pred -hhhhhhcchhhhhhhHHh--hhH-hhhhcccCHHHHHHHHHHHHHHhCCCCCcc-hHHHhhhhccc----hHHHHHHHH
Confidence 344577887777777776 553 455666666666555555555566777665 47777765554 777777754
Q ss_pred H
Q 007575 552 A 552 (597)
Q Consensus 552 a 552 (597)
.
T Consensus 216 Q 216 (333)
T KOG0991|consen 216 Q 216 (333)
T ss_pred H
Confidence 3
No 203
>PF07724 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR013093 ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of ATPase AAA-2 domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. Some of these ATPases function as a chaperone subunit of a proteasome-like degradation complex. This ATPase family includes some proteins not detected by IPR003959 from INTERPRO.; GO: 0005524 ATP binding; PDB: 1R6B_X 1KSF_X 3PXI_C 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 1HQY_E ....
Probab=99.00 E-value=5.6e-10 Score=107.97 Aligned_cols=113 Identities=32% Similarity=0.377 Sum_probs=76.3
Q ss_pred CCCceEEeCCCCChHHHHHHHHHHhcCC----CeeeechhhhHHHHhhcchHHHHHHHHHHH----hcCCeEEEEcCcch
Q 007575 364 PPRGVLLVGLPGTGKTLLAKAVAGEAEV----PFISCSASEFVELYVGMGASRVRDLFARAK----KEAPSIIFIDEIDA 435 (597)
Q Consensus 364 ~p~gVLL~GPPGTGKT~LArAIA~el~~----pfi~is~sef~~~~vG~~e~~vr~lF~~A~----~~aP~ILfIDEIDa 435 (597)
|-..+||+||+|+|||.+|+++|..+.. +++.++++++.+ .+.....+..++..+. .....||||||||.
T Consensus 2 p~~~~ll~GpsGvGKT~la~~la~~l~~~~~~~~~~~d~s~~~~--~~~~~~~~~~l~~~~~~~v~~~~~gVVllDEidK 79 (171)
T PF07724_consen 2 PKSNFLLAGPSGVGKTELAKALAELLFVGSERPLIRIDMSEYSE--GDDVESSVSKLLGSPPGYVGAEEGGVVLLDEIDK 79 (171)
T ss_dssp -SEEEEEESSTTSSHHHHHHHHHHHHT-SSCCEEEEEEGGGHCS--HHHCSCHCHHHHHHTTCHHHHHHHTEEEEETGGG
T ss_pred CEEEEEEECCCCCCHHHHHHHHHHHhccCCccchHHHhhhcccc--cchHHhhhhhhhhcccceeeccchhhhhhHHHhh
Confidence 3446899999999999999999999996 999999998866 1111222222222110 01112999999999
Q ss_pred hhhhcCCcccccchhHHHHHHHHHHHHhcCCC---------CCCcEEEEEecCCCC
Q 007575 436 VAKSRDGRFRIVSNDEREQTLNQLLTEMDGFD---------SNSAVIVLGATNRSD 482 (597)
Q Consensus 436 L~~~r~~~~~~~~~~e~eqtLnqLL~emdg~~---------~~~~VIVIaaTNrpd 482 (597)
+....+ .+.+-..+.+.+.||..|++-. +..++++|+|+|--.
T Consensus 80 a~~~~~----~~~~v~~~~V~~~LL~~le~g~~~d~~g~~vd~~n~ifI~Tsn~~~ 131 (171)
T PF07724_consen 80 AHPSNS----GGADVSGEGVQNSLLQLLEGGTLTDSYGRTVDTSNIIFIMTSNFGA 131 (171)
T ss_dssp CSHTTT----TCSHHHHHHHHHHHHHHHHHSEEEETTCCEEEGTTEEEEEEESSST
T ss_pred cccccc----ccchhhHHHHHHHHHHHhcccceecccceEEEeCCceEEEeccccc
Confidence 987622 2344556677888888886421 135799999999753
No 204
>PF00158 Sigma54_activat: Sigma-54 interaction domain; InterPro: IPR002078 Some bacterial regulatory proteins activate the expression of genes from promoters recognised by core RNA polymerase associated with the alternative sigma-54 factor. These have a conserved domain of about 230 residues involved in the ATP-dependent [, ] interaction with sigma-54. About half of the proteins in which this domain is found (algB, dcdT, flbD, hoxA, hupR1, hydG, ntrC, pgtA and pilR) belong to signal transduction two-component systems [] and possess a domain that can be phosphorylated by a sensor-kinase protein in their N-terminal section. Almost all of these proteins possess a helix-turn-helix DNA-binding domain in their C-terminal section. The domain which interacts with the sigma-54 factor has an ATPase activity. This may be required to promote a conformational change necessary for the interaction []. The domain contains an atypical ATP-binding motif A (P-loop) as well as a form of motif B. The two ATP-binding motifs are located in the N-terminal section of the domain.; GO: 0005524 ATP binding, 0008134 transcription factor binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1NY6_K 3M0E_G 1NY5_A 1OJL_A 3DZD_B 2C9C_A 2C98_A 2C96_A 2BJV_A 2C99_A ....
Probab=98.99 E-value=5.6e-10 Score=107.64 Aligned_cols=131 Identities=29% Similarity=0.460 Sum_probs=82.6
Q ss_pred ccCChHHHHHHHHHHHHhcChhHHhhcCCCCCCceEEeCCCCChHHHHHHHHHHhc---CCCeeeechhhhHHH-----H
Q 007575 334 VAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEA---EVPFISCSASEFVEL-----Y 405 (597)
Q Consensus 334 V~G~de~k~~L~eiv~~l~~p~~~~~lg~~~p~gVLL~GPPGTGKT~LArAIA~el---~~pfi~is~sef~~~-----~ 405 (597)
++|.+...+++.+.+..+. ..+.+|||+|++||||+++|++|.... +.||+.++|+.+... .
T Consensus 1 liG~s~~m~~~~~~~~~~a----------~~~~pVlI~GE~GtGK~~lA~~IH~~s~r~~~pfi~vnc~~~~~~~~e~~L 70 (168)
T PF00158_consen 1 LIGESPAMKRLREQAKRAA----------SSDLPVLITGETGTGKELLARAIHNNSPRKNGPFISVNCAALPEELLESEL 70 (168)
T ss_dssp SS--SHHHHHHHHHHHHHT----------TSTS-EEEECSTTSSHHHHHHHHHHCSTTTTS-EEEEETTTS-HHHHHHHH
T ss_pred CEeCCHHHHHHHHHHHHHh----------CCCCCEEEEcCCCCcHHHHHHHHHHhhhcccCCeEEEehhhhhcchhhhhh
Confidence 5777887777777666543 234679999999999999999998865 579999999866432 3
Q ss_pred hhcch-------HHHHHHHHHHHhcCCeEEEEcCcchhhhhcCCcccccchhHHHHHHHHHHHHhcC-----CCC----C
Q 007575 406 VGMGA-------SRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDG-----FDS----N 469 (597)
Q Consensus 406 vG~~e-------~~vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~eqtLnqLL~emdg-----~~~----~ 469 (597)
.|... .....+|++|..+ +||||||+.|...-+ ..|+..|+. ... .
T Consensus 71 FG~~~~~~~~~~~~~~G~l~~A~~G---tL~Ld~I~~L~~~~Q---------------~~Ll~~l~~~~~~~~g~~~~~~ 132 (168)
T PF00158_consen 71 FGHEKGAFTGARSDKKGLLEQANGG---TLFLDEIEDLPPELQ---------------AKLLRVLEEGKFTRLGSDKPVP 132 (168)
T ss_dssp HEBCSSSSTTTSSEBEHHHHHTTTS---EEEEETGGGS-HHHH---------------HHHHHHHHHSEEECCTSSSEEE
T ss_pred hccccccccccccccCCceeeccce---EEeecchhhhHHHHH---------------HHHHHHHhhchhcccccccccc
Confidence 33311 1233788888777 999999999975432 445555542 111 2
Q ss_pred CcEEEEEecCCCCCCChhhhCCCCcc
Q 007575 470 SAVIVLGATNRSDVLDPALRRPGRFD 495 (597)
Q Consensus 470 ~~VIVIaaTNrpd~LD~aLlRpgRFd 495 (597)
..+.||++|+.+ |. .+...|+|.
T Consensus 133 ~~~RiI~st~~~--l~-~~v~~g~fr 155 (168)
T PF00158_consen 133 VDVRIIASTSKD--LE-ELVEQGRFR 155 (168)
T ss_dssp --EEEEEEESS---HH-HHHHTTSS-
T ss_pred ccceEEeecCcC--HH-HHHHcCCCh
Confidence 368999999964 32 333446664
No 205
>PRK10923 glnG nitrogen regulation protein NR(I); Provisional
Probab=98.98 E-value=2.6e-09 Score=117.85 Aligned_cols=208 Identities=21% Similarity=0.267 Sum_probs=130.6
Q ss_pred ccccccCChHHHHHHHHHHHHhcChhHHhhcCCCCCCceEEeCCCCChHHHHHHHHHHhc---CCCeeeechhhhHHH--
Q 007575 330 TFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEA---EVPFISCSASEFVEL-- 404 (597)
Q Consensus 330 tf~dV~G~de~k~~L~eiv~~l~~p~~~~~lg~~~p~gVLL~GPPGTGKT~LArAIA~el---~~pfi~is~sef~~~-- 404 (597)
.+.+++|.......+.+.+..+. .....+||.|++|||||++|+++.... +.||+.++|..+...
T Consensus 136 ~~~~lig~s~~~~~l~~~~~~~~----------~~~~~vli~Ge~GtGK~~lA~~ih~~s~~~~~~~i~i~c~~~~~~~~ 205 (469)
T PRK10923 136 PTTDIIGEAPAMQDVFRIIGRLS----------RSSISVLINGESGTGKELVAHALHRHSPRAKAPFIALNMAAIPKDLI 205 (469)
T ss_pred ccccceecCHHHHHHHHHHHHHh----------ccCCeEEEEeCCCCcHHHHHHHHHhcCCCCCCCeEeeeCCCCCHHHH
Confidence 35678998888777776665432 224469999999999999999998875 579999999876332
Q ss_pred ---HhhcchH-------HHHHHHHHHHhcCCeEEEEcCcchhhhhcCCcccccchhHHHHHHHHHHHHhcCCC-----C-
Q 007575 405 ---YVGMGAS-------RVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFD-----S- 468 (597)
Q Consensus 405 ---~vG~~e~-------~vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~eqtLnqLL~emdg~~-----~- 468 (597)
..|.... .....|+.+. ...|||||||.|....+ ..|+..++.-. .
T Consensus 206 ~~~lfg~~~g~~~~~~~~~~g~~~~a~---~Gtl~l~~i~~l~~~~q---------------~~L~~~l~~~~~~~~~~~ 267 (469)
T PRK10923 206 ESELFGHEKGAFTGANTIRQGRFEQAD---GGTLFLDEIGDMPLDVQ---------------TRLLRVLADGQFYRVGGY 267 (469)
T ss_pred HHHhcCCCCCCCCCCCcCCCCCeeECC---CCEEEEeccccCCHHHH---------------HHHHHHHhcCcEEeCCCC
Confidence 1121100 0011233332 34899999999875432 34555554211 1
Q ss_pred ---CCcEEEEEecCCC-------CCCChhhhCCCCcceEEEecCCCHHHHHH----HHHHHHhc----CCCC---CCCCC
Q 007575 469 ---NSAVIVLGATNRS-------DVLDPALRRPGRFDRVVMVETPDKIGREA----ILKVHVSK----KELP---LAKDI 527 (597)
Q Consensus 469 ---~~~VIVIaaTNrp-------d~LD~aLlRpgRFd~~I~v~~Pd~~eR~e----ILk~~l~~----~~~~---l~~dv 527 (597)
...+-+|++|+.. ..+.+.|.. ||. .+.+..|...+|.+ ++..++.+ .+.+ +.++
T Consensus 268 ~~~~~~~rii~~~~~~l~~~~~~~~~~~~L~~--~l~-~~~i~~PpLreR~~Di~~l~~~~l~~~~~~~~~~~~~~~~~- 343 (469)
T PRK10923 268 APVKVDVRIIAATHQNLEQRVQEGKFREDLFH--RLN-VIRVHLPPLRERREDIPRLARHFLQVAARELGVEAKLLHPE- 343 (469)
T ss_pred CeEEeeEEEEEeCCCCHHHHHHcCCchHHHHH--Hhc-ceeecCCCcccchhhHHHHHHHHHHHHHHHcCCCCCCcCHH-
Confidence 2346788888764 234566665 664 46666777666653 44444432 1211 2222
Q ss_pred CHHHHHHhCCCCCHHHHHHHHHHHHHHHHhcCCCcccHHHHHHHH
Q 007575 528 DLGDIASMTTGFTGADLANLVNEAALLAGRLNKVVVEKIDFIHAV 572 (597)
Q Consensus 528 dl~~LA~~t~G~SgaDL~~Lv~eAal~A~r~~~~~It~~d~~~Al 572 (597)
.+..|..+.+..+.++|++++++|+..+ ....|+.+|+...+
T Consensus 344 a~~~L~~~~wpgNv~eL~~~i~~~~~~~---~~~~i~~~~l~~~~ 385 (469)
T PRK10923 344 TEAALTRLAWPGNVRQLENTCRWLTVMA---AGQEVLIQDLPGEL 385 (469)
T ss_pred HHHHHHhCCCCChHHHHHHHHHHHHHhC---CCCcccHHHCcHhh
Confidence 3667777777777899999999998776 45578888875444
No 206
>PRK11361 acetoacetate metabolism regulatory protein AtoC; Provisional
Probab=98.95 E-value=2.6e-09 Score=117.19 Aligned_cols=208 Identities=19% Similarity=0.264 Sum_probs=125.5
Q ss_pred ccccccCChHHHHHHHHHHHHhcChhHHhhcCCCCCCceEEeCCCCChHHHHHHHHHHhc---CCCeeeechhhhHHHH-
Q 007575 330 TFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEA---EVPFISCSASEFVELY- 405 (597)
Q Consensus 330 tf~dV~G~de~k~~L~eiv~~l~~p~~~~~lg~~~p~gVLL~GPPGTGKT~LArAIA~el---~~pfi~is~sef~~~~- 405 (597)
.+.+++|.......+.+.+..+.. ....+|++|++||||+++|+++.... +.||+.++|..+....
T Consensus 141 ~~~~ii~~S~~~~~~~~~~~~~a~----------~~~~vli~Ge~GtGK~~lA~~ih~~s~~~~~~~~~i~c~~~~~~~~ 210 (457)
T PRK11361 141 QWGHILTNSPAMMDICKDTAKIAL----------SQASVLISGESGTGKELIARAIHYNSRRAKGPFIKVNCAALPESLL 210 (457)
T ss_pred cccceecccHHHhHHHHHHHHHcC----------CCcEEEEEcCCCccHHHHHHHHHHhCCCCCCCeEEEECCCCCHHHH
Confidence 345678887766665555443322 23469999999999999999997654 5799999998763321
Q ss_pred ----hhcchH-------HHHHHHHHHHhcCCeEEEEcCcchhhhhcCCcccccchhHHHHHHHHHHHHhcCCC-----C-
Q 007575 406 ----VGMGAS-------RVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFD-----S- 468 (597)
Q Consensus 406 ----vG~~e~-------~vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~eqtLnqLL~emdg~~-----~- 468 (597)
.|.... .....+..|. ..+|||||||.|.... ...|+..++.-. .
T Consensus 211 ~~~lfg~~~~~~~~~~~~~~g~~~~a~---~gtl~ld~i~~l~~~~---------------q~~L~~~l~~~~~~~~~~~ 272 (457)
T PRK11361 211 ESELFGHEKGAFTGAQTLRQGLFERAN---EGTLLLDEIGEMPLVL---------------QAKLLRILQEREFERIGGH 272 (457)
T ss_pred HHHhcCCCCCCCCCCCCCCCCceEECC---CCEEEEechhhCCHHH---------------HHHHHHHHhcCcEEeCCCC
Confidence 121000 0011233332 3499999999987542 244555554211 1
Q ss_pred ---CCcEEEEEecCCCC-------CCChhhhCCCCcceEEEecCCCHHHHHH----HHHHHHhcC----CC---CCCCCC
Q 007575 469 ---NSAVIVLGATNRSD-------VLDPALRRPGRFDRVVMVETPDKIGREA----ILKVHVSKK----EL---PLAKDI 527 (597)
Q Consensus 469 ---~~~VIVIaaTNrpd-------~LD~aLlRpgRFd~~I~v~~Pd~~eR~e----ILk~~l~~~----~~---~l~~dv 527 (597)
..++.||++|+..- .+.+.|.. |+. .+.+..|...+|.+ ++..++.+. +. .+.++
T Consensus 273 ~~~~~~~rii~~t~~~l~~~~~~g~~~~~l~~--~l~-~~~i~~ppLreR~~di~~l~~~~l~~~~~~~~~~~~~~~~~- 348 (457)
T PRK11361 273 QTIKVDIRIIAATNRDLQAMVKEGTFREDLFY--RLN-VIHLILPPLRDRREDISLLANHFLQKFSSENQRDIIDIDPM- 348 (457)
T ss_pred ceeeeceEEEEeCCCCHHHHHHcCCchHHHHH--Hhc-cceecCCChhhchhhHHHHHHHHHHHHHHHcCCCCCCcCHH-
Confidence 23578899998641 23333332 332 46777888887754 333333321 11 22222
Q ss_pred CHHHHHHhCCCCCHHHHHHHHHHHHHHHHhcCCCcccHHHHHHHH
Q 007575 528 DLGDIASMTTGFTGADLANLVNEAALLAGRLNKVVVEKIDFIHAV 572 (597)
Q Consensus 528 dl~~LA~~t~G~SgaDL~~Lv~eAal~A~r~~~~~It~~d~~~Al 572 (597)
.++.|..+.+.-+.++|++++.+|+..+ ....|+.+|+...+
T Consensus 349 a~~~L~~~~wpgNv~eL~~~~~~~~~~~---~~~~i~~~~l~~~~ 390 (457)
T PRK11361 349 AMSLLTAWSWPGNIRELSNVIERAVVMN---SGPIIFSEDLPPQI 390 (457)
T ss_pred HHHHHHcCCCCCcHHHHHHHHHHHHHhC---CCCcccHHHChHhh
Confidence 3566666666667899999999988765 44578888876444
No 207
>KOG1514 consensus Origin recognition complex, subunit 1, and related proteins [Replication, recombination and repair]
Probab=98.94 E-value=1e-08 Score=115.30 Aligned_cols=238 Identities=18% Similarity=0.250 Sum_probs=148.8
Q ss_pred ccCChHHHHHHHHHHHHhcChhHHhhcCCCCCCceEEeCCCCChHHHHHHHHHHhc----------CCCeeeechhhhHH
Q 007575 334 VAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEA----------EVPFISCSASEFVE 403 (597)
Q Consensus 334 V~G~de~k~~L~eiv~~l~~p~~~~~lg~~~p~gVLL~GPPGTGKT~LArAIA~el----------~~pfi~is~sef~~ 403 (597)
+.+.+....++..+++..-..+ .....++++|-||||||.+++.+-.++ ..+|+.|++-.+.+
T Consensus 398 LpcRe~E~~~I~~f~~~~i~~~-------~~g~~mYIsGvPGtGKT~tV~~Vm~~Lq~~s~~~e~p~f~yveINgm~l~~ 470 (767)
T KOG1514|consen 398 LPCRENEFSEIEDFLRSFISDQ-------GLGSCMYISGVPGTGKTATVLEVMKELQTSSAQKELPKFDYVEINGLRLAS 470 (767)
T ss_pred ccchhHHHHHHHHHHHhhcCCC-------CCceeEEEecCCCCCceehHHHHHHHHHHHHhhcCCCCccEEEEcceeecC
Confidence 5555666566665555432221 112379999999999999999998754 35777887765433
Q ss_pred H---H-------hhc------chHHHHHHHHHH-HhcCCeEEEEcCcchhhhhcCCcccccchhHHHHHHHHHHHHhcCC
Q 007575 404 L---Y-------VGM------GASRVRDLFARA-KKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGF 466 (597)
Q Consensus 404 ~---~-------vG~------~e~~vr~lF~~A-~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~eqtLnqLL~emdg~ 466 (597)
. | .|+ +...+..-|... ....+|||+|||+|.|....+ .++..|+..-.
T Consensus 471 ~~~~Y~~I~~~lsg~~~~~~~al~~L~~~f~~~k~~~~~~VvLiDElD~Lvtr~Q------------dVlYn~fdWpt-- 536 (767)
T KOG1514|consen 471 PREIYEKIWEALSGERVTWDAALEALNFRFTVPKPKRSTTVVLIDELDILVTRSQ------------DVLYNIFDWPT-- 536 (767)
T ss_pred HHHHHHHHHHhcccCcccHHHHHHHHHHhhccCCCCCCCEEEEeccHHHHhcccH------------HHHHHHhcCCc--
Confidence 2 2 122 111223333311 134578999999999986543 24444444322
Q ss_pred CCCCcEEEEEecCCCCCCChhhhC--CCCcc-eEEEecCCCHHHHHHHHHHHHhcCCCCCCCCCCHHHHHHhCCCCCH--
Q 007575 467 DSNSAVIVLGATNRSDVLDPALRR--PGRFD-RVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTTGFTG-- 541 (597)
Q Consensus 467 ~~~~~VIVIaaTNrpd~LD~aLlR--pgRFd-~~I~v~~Pd~~eR~eILk~~l~~~~~~l~~dvdl~~LA~~t~G~Sg-- 541 (597)
..+.+++||+..|..+....-|.. ..|.+ ..+.|.+++..+.++|+...+... ..+..+ ..+.+|+.....||
T Consensus 537 ~~~sKLvvi~IaNTmdlPEr~l~nrvsSRlg~tRi~F~pYth~qLq~Ii~~RL~~~-~~f~~~-aielvarkVAavSGDa 614 (767)
T KOG1514|consen 537 LKNSKLVVIAIANTMDLPERLLMNRVSSRLGLTRICFQPYTHEQLQEIISARLKGL-DAFENK-AIELVARKVAAVSGDA 614 (767)
T ss_pred CCCCceEEEEecccccCHHHHhccchhhhccceeeecCCCCHHHHHHHHHHhhcch-hhcchh-HHHHHHHHHHhccccH
Confidence 235678888888875433322211 11432 468899999999999999998653 122222 25555665555555
Q ss_pred HHHHHHHHHHHHHHHhcCC-------CcccHHHHHHHHHHHhccccc-cccccchhhhhhc
Q 007575 542 ADLANLVNEAALLAGRLNK-------VVVEKIDFIHAVERSIAVSLS-LSLSLSLQASISL 594 (597)
Q Consensus 542 aDL~~Lv~eAal~A~r~~~-------~~It~~d~~~Al~~v~~g~~k-~s~~ls~q~~l~l 594 (597)
+....+|++|+..|..+.. ..|+..|+.+|+..++....- .-.-+|.-+.+|+
T Consensus 615 Rraldic~RA~Eia~~~~~~~k~~~~q~v~~~~v~~Ai~em~~~~~~~~i~glS~~~k~fl 675 (767)
T KOG1514|consen 615 RRALDICRRAAEIAEERNVKGKLAVSQLVGILHVMEAINEMLASPYIKALKGLSFLQKIFL 675 (767)
T ss_pred HHHHHHHHHHHHHhhhhcccccccccceeehHHHHHHHHHHhhhhHHHHhcchHHHHHHHH
Confidence 5667899999999977755 678999999999998877642 2234555555554
No 208
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=98.94 E-value=1.4e-08 Score=108.37 Aligned_cols=81 Identities=22% Similarity=0.241 Sum_probs=56.7
Q ss_pred ccc-cccCChHHHHHHHHHHHHhcChhHHhhcCC-CCCCceEEeCCCCChHHHHHHHHHHhcCC-------Ceeeech--
Q 007575 330 TFA-DVAGVDEAKEELEEIVEFLRSPDKYIRLGA-RPPRGVLLVGLPGTGKTLLAKAVAGEAEV-------PFISCSA-- 398 (597)
Q Consensus 330 tf~-dV~G~de~k~~L~eiv~~l~~p~~~~~lg~-~~p~gVLL~GPPGTGKT~LArAIA~el~~-------pfi~is~-- 398 (597)
-|+ ++.|+++++++|.+.+ +... .|. ...+.++|+||||+|||+||+++++.++. |++.+.+
T Consensus 48 ~F~~~~~G~~~~i~~lv~~l---~~~a----~g~~~~r~il~L~GPPGsGKStla~~La~~l~~ys~t~eG~~Y~~~~~~ 120 (361)
T smart00763 48 FFDHDFFGMEEAIERFVNYF---KSAA----QGLEERKQILYLLGPVGGGKSSLVECLKRGLEEYSKTPEGRRYTFKWNG 120 (361)
T ss_pred ccchhccCcHHHHHHHHHHH---HHHH----hcCCCCCcEEEEECCCCCCHHHHHHHHHHHHhhhcccccCceEEEEecC
Confidence 456 8999999966655444 3322 122 23567899999999999999999999976 8888877
Q ss_pred --hhhHHHHhhcchHHHHHHH
Q 007575 399 --SEFVELYVGMGASRVRDLF 417 (597)
Q Consensus 399 --sef~~~~vG~~e~~vr~lF 417 (597)
+.+.+..++.....+|+.|
T Consensus 121 ~~sp~~e~Pl~l~p~~~r~~~ 141 (361)
T smart00763 121 EESPMHEDPLHLFPDELREDL 141 (361)
T ss_pred CCCCCccCCcccCCHHHHHHH
Confidence 5555555544444444444
No 209
>PTZ00111 DNA replication licensing factor MCM4; Provisional
Probab=98.91 E-value=1.9e-08 Score=117.49 Aligned_cols=159 Identities=19% Similarity=0.199 Sum_probs=90.8
Q ss_pred cccCChHHHHHHHHHHHH-hcChhH--------HhhcCCCCCCceEEeCCCCChHHHHHHHHHHhc-------CCCeeee
Q 007575 333 DVAGVDEAKEELEEIVEF-LRSPDK--------YIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEA-------EVPFISC 396 (597)
Q Consensus 333 dV~G~de~k~~L~eiv~~-l~~p~~--------~~~lg~~~p~gVLL~GPPGTGKT~LArAIA~el-------~~pfi~i 396 (597)
.|.|.+.+|+.|.-.+-- ...... |.....+...+|||+|+||||||.+|++++.-. |.++..+
T Consensus 451 ~I~G~e~vK~ailL~L~gG~~k~~~~~~~~dg~~~~~~iRgdihVLLvGDPGTGKSqLAr~Ih~lspR~~ytsG~~~s~v 530 (915)
T PTZ00111 451 SIKARNNVKIGLLCQLFSGNKNSSDFNKSPDACYKVDNFRGIINVLLCGDPGTAKSQLLHYTHLLSPRSIYTSGKSSSSV 530 (915)
T ss_pred eEECCHHHHHHHHHHHhcCCccccccccccccccccccccCCceEEEeCCCCccHHHHHHHHHHhCCccccCCCCCCccc
Confidence 478888887766332211 111000 000123455689999999999999999998854 3456655
Q ss_pred chhhhHHHHh-hcchHHH-HHHHHHHHhcCCeEEEEcCcchhhhhcCCcccccchhHHHHHHHHHHHHhcCCC-------
Q 007575 397 SASEFVELYV-GMGASRV-RDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFD------- 467 (597)
Q Consensus 397 s~sef~~~~v-G~~e~~v-r~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~eqtLnqLL~emdg~~------- 467 (597)
.+..+....- ..++..+ ...+..|.. .+++|||+|.+... ....|+..|+.-.
T Consensus 531 gLTa~~~~~d~~tG~~~le~GaLvlAdg---GtL~IDEidkms~~---------------~Q~aLlEaMEqqtIsI~KaG 592 (915)
T PTZ00111 531 GLTASIKFNESDNGRAMIQPGAVVLANG---GVCCIDELDKCHNE---------------SRLSLYEVMEQQTVTIAKAG 592 (915)
T ss_pred cccchhhhcccccCcccccCCcEEEcCC---CeEEecchhhCCHH---------------HHHHHHHHHhCCEEEEecCC
Confidence 5554322100 0011000 011222222 39999999998543 2245555664321
Q ss_pred ----CCCcEEEEEecCCCC-------------CCChhhhCCCCcceEEE-ecCCCHHHHHHH
Q 007575 468 ----SNSAVIVLGATNRSD-------------VLDPALRRPGRFDRVVM-VETPDKIGREAI 511 (597)
Q Consensus 468 ----~~~~VIVIaaTNrpd-------------~LD~aLlRpgRFd~~I~-v~~Pd~~eR~eI 511 (597)
-+..+.||||+|... .|+++|++ |||..+. ++.|+.+.=..|
T Consensus 593 i~~tL~ar~rVIAAaNP~~gryd~~~s~~eni~Lp~~LLS--RFDLIf~l~D~~d~~~D~~l 652 (915)
T PTZ00111 593 IVATLKAETAILASCNPINSRYNKNKAVIENINISPSLFT--RFDLIYLVLDHIDQDTDQLI 652 (915)
T ss_pred cceecCCCeEEEEEcCCcccccCcccCcccccCCChHHhh--hhcEEEEecCCCChHHHHHH
Confidence 235789999999741 46799999 9997754 456665443333
No 210
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=98.90 E-value=8.2e-09 Score=98.82 Aligned_cols=137 Identities=22% Similarity=0.321 Sum_probs=88.4
Q ss_pred CChHHHHHHHHHHHHhcChhHHhhcCCCCCCceEEeCCCCChHHHHHHHHHHhcCCCeee----echhhhHHH-------
Q 007575 336 GVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFIS----CSASEFVEL------- 404 (597)
Q Consensus 336 G~de~k~~L~eiv~~l~~p~~~~~lg~~~p~gVLL~GPPGTGKT~LArAIA~el~~pfi~----is~sef~~~------- 404 (597)
|++++.+.|...+. ..+.|..+||+||+|+||+++|+++|..+-..-.. -.|......
T Consensus 1 gq~~~~~~L~~~~~-----------~~~l~ha~L~~G~~g~gk~~~a~~~a~~ll~~~~~~~~c~~c~~c~~~~~~~~~d 69 (162)
T PF13177_consen 1 GQEEIIELLKNLIK-----------SGRLPHALLFHGPSGSGKKTLALAFARALLCSNPNEDPCGECRSCRRIEEGNHPD 69 (162)
T ss_dssp S-HHHHHHHHHHHH-----------CTC--SEEEEECSTTSSHHHHHHHHHHHHC-TT-CTT--SSSHHHHHHHTT-CTT
T ss_pred CcHHHHHHHHHHHH-----------cCCcceeEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHhccCcc
Confidence 67888888888776 23567789999999999999999999976321111 111111100
Q ss_pred ----H-h----hcchHHHHHHHHHHHh----cCCeEEEEcCcchhhhhcCCcccccchhHHHHHHHHHHHHhcCCCCCCc
Q 007575 405 ----Y-V----GMGASRVRDLFARAKK----EAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSA 471 (597)
Q Consensus 405 ----~-v----G~~e~~vr~lF~~A~~----~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~eqtLnqLL~emdg~~~~~~ 471 (597)
. . .-+.+.++++...+.. ....|++|||+|.+.. ...|.||..|+. ++..
T Consensus 70 ~~~~~~~~~~~~i~i~~ir~i~~~~~~~~~~~~~KviiI~~ad~l~~---------------~a~NaLLK~LEe--pp~~ 132 (162)
T PF13177_consen 70 FIIIKPDKKKKSIKIDQIREIIEFLSLSPSEGKYKVIIIDEADKLTE---------------EAQNALLKTLEE--PPEN 132 (162)
T ss_dssp EEEEETTTSSSSBSHHHHHHHHHHCTSS-TTSSSEEEEEETGGGS-H---------------HHHHHHHHHHHS--TTTT
T ss_pred eEEEecccccchhhHHHHHHHHHHHHHHHhcCCceEEEeehHhhhhH---------------HHHHHHHHHhcC--CCCC
Confidence 0 0 1234566766666543 2356999999999863 355999999994 4567
Q ss_pred EEEEEecCCCCCCChhhhCCCCcceEEEecCC
Q 007575 472 VIVLGATNRSDVLDPALRRPGRFDRVVMVETP 503 (597)
Q Consensus 472 VIVIaaTNrpd~LD~aLlRpgRFd~~I~v~~P 503 (597)
+++|.+|+.++.|-+.+++ |.. .+.+++.
T Consensus 133 ~~fiL~t~~~~~il~TI~S--Rc~-~i~~~~l 161 (162)
T PF13177_consen 133 TYFILITNNPSKILPTIRS--RCQ-VIRFRPL 161 (162)
T ss_dssp EEEEEEES-GGGS-HHHHT--TSE-EEEE---
T ss_pred EEEEEEECChHHChHHHHh--hce-EEecCCC
Confidence 8888899999999999999 774 5666543
No 211
>PRK13765 ATP-dependent protease Lon; Provisional
Probab=98.89 E-value=1.4e-08 Score=116.11 Aligned_cols=102 Identities=20% Similarity=0.229 Sum_probs=65.2
Q ss_pred cEEEEEecCCC--CCCChhhhCCCCcc---eEEEecC--C-CHHHHHHHHHHHHhcCCCC-CCCCCCHH---HHHHh---
Q 007575 471 AVIVLGATNRS--DVLDPALRRPGRFD---RVVMVET--P-DKIGREAILKVHVSKKELP-LAKDIDLG---DIASM--- 535 (597)
Q Consensus 471 ~VIVIaaTNrp--d~LD~aLlRpgRFd---~~I~v~~--P-d~~eR~eILk~~l~~~~~~-l~~dvdl~---~LA~~--- 535 (597)
.+.||+++|+. ..+||+|.. ||. ..+.++. + +.+.+..+++...+..... ..+.++-+ .|.+.
T Consensus 277 dvrvI~a~~~~ll~~~dpdL~~--rfk~~~v~v~f~~~~~d~~e~~~~~~~~iaqe~~~~G~l~~f~~eAVa~LI~~~~R 354 (637)
T PRK13765 277 DFIMVAAGNLDALENMHPALRS--RIKGYGYEVYMRDTMEDTPENRRKLVRFVAQEVKRDGKIPHFDRDAVEEIIREAKR 354 (637)
T ss_pred eeEEEEecCcCHHHhhhHHHHH--HhccCeEEEEcccccCCCHHHHHHHHHHHHHHhhhccCCCCCCHHHHHHHHHHHHH
Confidence 57889999885 567999988 775 4455542 2 2455666665443321110 11233333 33221
Q ss_pred CCC------CCHHHHHHHHHHHHHHHHhcCCCcccHHHHHHHHHH
Q 007575 536 TTG------FTGADLANLVNEAALLAGRLNKVVVEKIDFIHAVER 574 (597)
Q Consensus 536 t~G------~SgaDL~~Lv~eAal~A~r~~~~~It~~d~~~Al~~ 574 (597)
..| ...++|.+++++|...|...+...|+.+|+.+|+.+
T Consensus 355 ~ag~r~~lsl~~~~l~~l~r~a~~~a~~~~~~~i~~~~v~~a~~~ 399 (637)
T PRK13765 355 RAGRKGHLTLKLRDLGGLVRVAGDIARSEGAELTTAEHVLEAKKI 399 (637)
T ss_pred HhCCccccccCHHHHHHHHHHHHHHHHhhccceecHHHHHHHHHh
Confidence 112 335899999999999999999999999999888754
No 212
>PRK15115 response regulator GlrR; Provisional
Probab=98.88 E-value=8.8e-09 Score=112.83 Aligned_cols=182 Identities=24% Similarity=0.372 Sum_probs=112.0
Q ss_pred CceEEeCCCCChHHHHHHHHHHhc---CCCeeeechhhhHHHHh-----hcch-------HHHHHHHHHHHhcCCeEEEE
Q 007575 366 RGVLLVGLPGTGKTLLAKAVAGEA---EVPFISCSASEFVELYV-----GMGA-------SRVRDLFARAKKEAPSIIFI 430 (597)
Q Consensus 366 ~gVLL~GPPGTGKT~LArAIA~el---~~pfi~is~sef~~~~v-----G~~e-------~~vr~lF~~A~~~aP~ILfI 430 (597)
..++|+|++|||||++|+++.... +.||+.++|..+.+... |... .....+++.+. ..+|||
T Consensus 158 ~~vli~Ge~GtGk~~lA~~ih~~s~r~~~~f~~i~c~~~~~~~~~~~lfg~~~~~~~~~~~~~~g~~~~a~---~gtl~l 234 (444)
T PRK15115 158 VSVLINGQSGTGKEILAQAIHNASPRASKPFIAINCGALPEQLLESELFGHARGAFTGAVSNREGLFQAAE---GGTLFL 234 (444)
T ss_pred CeEEEEcCCcchHHHHHHHHHHhcCCCCCCeEEEeCCCCCHHHHHHHhcCCCcCCCCCCccCCCCcEEECC---CCEEEE
Confidence 469999999999999999998764 58999999986633211 1100 00011233232 349999
Q ss_pred cCcchhhhhcCCcccccchhHHHHHHHHHHHHhcCCC-----C----CCcEEEEEecCCCCCCChhhhCCCCcc------
Q 007575 431 DEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFD-----S----NSAVIVLGATNRSDVLDPALRRPGRFD------ 495 (597)
Q Consensus 431 DEIDaL~~~r~~~~~~~~~~e~eqtLnqLL~emdg~~-----~----~~~VIVIaaTNrpd~LD~aLlRpgRFd------ 495 (597)
||||.|....+ ..|+..++.-. . ...+.+|++|+.. +...+ ..|+|.
T Consensus 235 ~~i~~l~~~~q---------------~~L~~~l~~~~~~~~g~~~~~~~~~rii~~~~~~--l~~~~-~~~~f~~~l~~~ 296 (444)
T PRK15115 235 DEIGDMPAPLQ---------------VKLLRVLQERKVRPLGSNRDIDIDVRIISATHRD--LPKAM-ARGEFREDLYYR 296 (444)
T ss_pred EccccCCHHHH---------------HHHHHHHhhCCEEeCCCCceeeeeEEEEEeCCCC--HHHHH-HcCCccHHHHHh
Confidence 99999875432 34555543211 1 1257888888863 33222 223442
Q ss_pred -eEEEecCCCHHHHHH----HHHHHHhc----CCC---CCCCCCCHHHHHHhCCCCCHHHHHHHHHHHHHHHHhcCCCcc
Q 007575 496 -RVVMVETPDKIGREA----ILKVHVSK----KEL---PLAKDIDLGDIASMTTGFTGADLANLVNEAALLAGRLNKVVV 563 (597)
Q Consensus 496 -~~I~v~~Pd~~eR~e----ILk~~l~~----~~~---~l~~dvdl~~LA~~t~G~SgaDL~~Lv~eAal~A~r~~~~~I 563 (597)
..+.+..|...+|.+ +++.++.+ .+. .+.++ .++.|..+.+.-+.++|.+++++|+..+ ....|
T Consensus 297 l~~~~i~lPpLr~R~eDi~~l~~~~l~~~~~~~~~~~~~~~~~-a~~~L~~~~WpgNvreL~~~i~~~~~~~---~~~~i 372 (444)
T PRK15115 297 LNVVSLKIPALAERTEDIPLLANHLLRQAAERHKPFVRAFSTD-AMKRLMTASWPGNVRQLVNVIEQCVALT---SSPVI 372 (444)
T ss_pred hceeeecCCChHhccccHHHHHHHHHHHHHHHhCCCCCCcCHH-HHHHHHhCCCCChHHHHHHHHHHHHHhC---CCCcc
Confidence 156777888888853 33444432 111 13333 3677777776678899999999988764 45567
Q ss_pred cHHHHHHHH
Q 007575 564 EKIDFIHAV 572 (597)
Q Consensus 564 t~~d~~~Al 572 (597)
+.+++...+
T Consensus 373 ~~~~l~~~~ 381 (444)
T PRK15115 373 SDALVEQAL 381 (444)
T ss_pred Chhhhhhhh
Confidence 777775443
No 213
>KOG0732 consensus AAA+-type ATPase containing the bromodomain [Posttranslational modification, protein turnover, chaperones]
Probab=98.86 E-value=5.1e-09 Score=122.81 Aligned_cols=201 Identities=20% Similarity=0.277 Sum_probs=131.3
Q ss_pred CcceeEEEecCCCCCchhHH--HHHhCCceecCCCCC----------------------------CcCcHHHHHHHHHHH
Q 007575 239 PTKRIVYTTTRPSDIKTPYE--KMLENQVEFGSPDKR----------------------------SGGFLNSALIALFYV 288 (597)
Q Consensus 239 ~~~~~~~~t~~~~~~~~~~~--~~~~~~v~~~~~~~~----------------------------~~~~~~~~l~~l~~~ 288 (597)
....+++|||||+++|++++ ++++++++|..|+.. +.||++++|.+||.+
T Consensus 405 gqVvvigATnRpda~dpaLRRPgrfdref~f~lp~~~ar~~Il~Ihtrkw~~~i~~~l~~~la~~t~gy~gaDlkaLCTe 484 (1080)
T KOG0732|consen 405 GQVVVIGATNRPDAIDPALRRPGRFDREFYFPLPDVDARAKILDIHTRKWEPPISRELLLWLAEETSGYGGADLKALCTE 484 (1080)
T ss_pred CceEEEcccCCccccchhhcCCcccceeEeeeCCchHHHHHHHHHhccCCCCCCCHHHHHHHHHhccccchHHHHHHHHH
Confidence 34457899999999999996 799999999998643 789999999999999
Q ss_pred HHHHHHHhhcccccccccccccc---------------cccCCCCCC-ccccCCC---CcccccccCChHHHHHHHHHHH
Q 007575 289 AVLAGLLHRFPVSFSQTAGQVGH---------------RKTRGPGGA-KVSEQGD---TITFADVAGVDEAKEELEEIVE 349 (597)
Q Consensus 289 ~~l~~~~~~~~~~~~~~~~~~~~---------------~~~~~~~~~-~~~~~~~---~vtf~dV~G~de~k~~L~eiv~ 349 (597)
|++.++.+.+|..++....-... .+..++..+ ......| .+.. +++...+.+.++..++
T Consensus 485 Aal~~~~r~~Pq~y~s~~kl~~d~~~ikV~~~~f~~A~~~i~ps~~R~~~~~s~Pl~~~~~~--ll~~~~~~~~iq~~~~ 562 (1080)
T KOG0732|consen 485 AALIALRRSFPQIYSSSDKLLIDVALIKVEVRDFVEAMSRITPSSRRSSVIFSRPLSTYLKP--LLPFQDALEDIQGLMD 562 (1080)
T ss_pred HhhhhhccccCeeecccccccccchhhhhhhHhhhhhhhccCCCCCccccCCCCCCCcceec--ccchHHHHHHhhcchh
Confidence 99999999999876542211000 000001111 0001111 0111 2222222222322221
Q ss_pred H--------------hcChhHHhhcCCCCCCceEEeCCCCChHHHHHHHHHHhc-CCCeeeechhhhHHHH-hhcchHHH
Q 007575 350 F--------------LRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEA-EVPFISCSASEFVELY-VGMGASRV 413 (597)
Q Consensus 350 ~--------------l~~p~~~~~lg~~~p~gVLL~GPPGTGKT~LArAIA~el-~~pfi~is~sef~~~~-vG~~e~~v 413 (597)
. ++..+.......-....+++.|..|.|-+++..||.+.+ +.++.+...+.+...- .......+
T Consensus 563 va~~~~k~~e~~~~~v~~~e~~~~i~lic~~~lli~~~~~~g~~~lg~aIlh~~~~~~v~s~~issll~d~~~~~~~~~i 642 (1080)
T KOG0732|consen 563 VASSMAKIEEHLKLLVRSFESNFAIRLICRPRLLINGGKGSGQDYLGPAILHRLEGLPVQSLDISSLLSDEGTEDLEEEI 642 (1080)
T ss_pred HHhhhhhHHHHhHHHHHhhhcccchhhhcCcHHhcCCCcccccCcccHHHHHHHhccchHHHHHHHHHhccccccHHHHH
Confidence 1 111111001111123348899999999999999998876 7888877777666554 55567788
Q ss_pred HHHHHHHHhcCCeEEEEcCcchhhhhcC
Q 007575 414 RDLFARAKKEAPSIIFIDEIDAVAKSRD 441 (597)
Q Consensus 414 r~lF~~A~~~aP~ILfIDEIDaL~~~r~ 441 (597)
..+|.+|+...||||||-++|.+.....
T Consensus 643 v~i~~eaR~~~psi~~ip~~d~w~~~~p 670 (1080)
T KOG0732|consen 643 VHIFMEARKTTPSIVFIPNVDEWARVIP 670 (1080)
T ss_pred HHHHHHHhccCCceeeccchhhhhhcCc
Confidence 8999999999999999999999986654
No 214
>TIGR01818 ntrC nitrogen regulation protein NR(I). This model represents NtrC, a DNA-binding response regulator that is phosphorylated by NtrB and interacts with sigma-54. NtrC usually controls the expression of glutamine synthase, GlnA, and may be called GlnL, GlnG, etc.
Probab=98.83 E-value=1.6e-08 Score=111.31 Aligned_cols=206 Identities=21% Similarity=0.271 Sum_probs=123.5
Q ss_pred ccccCChHHHHHHHHHHHHhcChhHHhhcCCCCCCceEEeCCCCChHHHHHHHHHHhc---CCCeeeechhhhHHHH---
Q 007575 332 ADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEA---EVPFISCSASEFVELY--- 405 (597)
Q Consensus 332 ~dV~G~de~k~~L~eiv~~l~~p~~~~~lg~~~p~gVLL~GPPGTGKT~LArAIA~el---~~pfi~is~sef~~~~--- 405 (597)
..++|......++.+.+..+.. ....+++.|++||||+++|+++.... +.||+.++|..+.+..
T Consensus 134 ~~lig~s~~~~~v~~~i~~~a~----------~~~~vli~Ge~GtGK~~~A~~ih~~~~~~~~~~~~~~c~~~~~~~~~~ 203 (463)
T TIGR01818 134 AELIGEAPAMQEVFRAIGRLSR----------SDITVLINGESGTGKELVARALHRHSPRANGPFIALNMAAIPKDLIES 203 (463)
T ss_pred cceeecCHHHHHHHHHHHHHhC----------cCCeEEEECCCCCCHHHHHHHHHHhCCCCCCCeEEEeCCCCCHHHHHH
Confidence 4578888777666665554322 23469999999999999999998764 6799999998663321
Q ss_pred --hhcchH-------HHHHHHHHHHhcCCeEEEEcCcchhhhhcCCcccccchhHHHHHHHHHHHHhcCCC---------
Q 007575 406 --VGMGAS-------RVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFD--------- 467 (597)
Q Consensus 406 --vG~~e~-------~vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~eqtLnqLL~emdg~~--------- 467 (597)
.|.... .....|..+ ....|||||||.|.... ...|+..++.-.
T Consensus 204 ~lfg~~~~~~~~~~~~~~g~~~~a---~~gtl~l~ei~~l~~~~---------------q~~ll~~l~~~~~~~~~~~~~ 265 (463)
T TIGR01818 204 ELFGHEKGAFTGANTRRQGRFEQA---DGGTLFLDEIGDMPLDA---------------QTRLLRVLADGEFYRVGGRTP 265 (463)
T ss_pred HhcCCCCCCCCCcccCCCCcEEEC---CCCeEEEEchhhCCHHH---------------HHHHHHHHhcCcEEECCCCce
Confidence 121000 001112222 34589999999986442 234444443211
Q ss_pred CCCcEEEEEecCCC-------CCCChhhhCCCCcceEEEecCCCHHHHH----HHHHHHHhcC----C---CCCCCCCCH
Q 007575 468 SNSAVIVLGATNRS-------DVLDPALRRPGRFDRVVMVETPDKIGRE----AILKVHVSKK----E---LPLAKDIDL 529 (597)
Q Consensus 468 ~~~~VIVIaaTNrp-------d~LD~aLlRpgRFd~~I~v~~Pd~~eR~----eILk~~l~~~----~---~~l~~dvdl 529 (597)
....+.||++|+.. ..+.+.|.. |+. .+.+..|...+|. .++..++.+. + ..+.++ .+
T Consensus 266 ~~~~~rii~~~~~~l~~~~~~~~f~~~L~~--rl~-~~~i~lPpLr~R~~Di~~l~~~~l~~~~~~~~~~~~~~~~~-a~ 341 (463)
T TIGR01818 266 IKVDVRIVAATHQNLEALVRQGKFREDLFH--RLN-VIRIHLPPLRERREDIPRLARHFLALAARELDVEPKLLDPE-AL 341 (463)
T ss_pred eeeeeEEEEeCCCCHHHHHHcCCcHHHHHH--HhC-cceecCCCcccchhhHHHHHHHHHHHHHHHhCCCCCCcCHH-HH
Confidence 12356788888764 133444544 443 3455666655553 4444444321 1 122222 35
Q ss_pred HHHHHhCCCCCHHHHHHHHHHHHHHHHhcCCCcccHHHHHHHH
Q 007575 530 GDIASMTTGFTGADLANLVNEAALLAGRLNKVVVEKIDFIHAV 572 (597)
Q Consensus 530 ~~LA~~t~G~SgaDL~~Lv~eAal~A~r~~~~~It~~d~~~Al 572 (597)
..|..+.+.-+.++|.+++.+|+..+ ....|+.+|+...+
T Consensus 342 ~~L~~~~wpgNvreL~~~~~~~~~~~---~~~~i~~~~l~~~~ 381 (463)
T TIGR01818 342 ERLKQLRWPGNVRQLENLCRWLTVMA---SGDEVLVSDLPAEL 381 (463)
T ss_pred HHHHhCCCCChHHHHHHHHHHHHHhC---CCCcccHHhchHHH
Confidence 66666665556799999999998776 44578888886555
No 215
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=98.83 E-value=2.3e-08 Score=106.75 Aligned_cols=134 Identities=21% Similarity=0.273 Sum_probs=97.3
Q ss_pred CCCCCceEEeCCCCChHHHHHHHHHHhcCCCee---ee---ch-----------hhhHHHH-------------------
Q 007575 362 ARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFI---SC---SA-----------SEFVELY------------------- 405 (597)
Q Consensus 362 ~~~p~gVLL~GPPGTGKT~LArAIA~el~~pfi---~i---s~-----------sef~~~~------------------- 405 (597)
.+.|.++||+||+|+||+++|+++|+.+.+..- .- .| +++....
T Consensus 18 ~rl~ha~Lf~Gp~G~GK~~lA~~~A~~LlC~~~~~~~~~Cg~C~~C~~~~~~~HPD~~~i~p~~~~~~~~~~~~~~~~~~ 97 (342)
T PRK06964 18 ARLPHALLLHGQAGIGKLDFAQHLAQGLLCETPQPDGEPCGTCAACNWFAQGNHPDYRIVRPEALAAEAPGAADEAKEAD 97 (342)
T ss_pred CCcceEEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcCCCCCEEEEecccccccccccccccccch
Confidence 377889999999999999999999987754210 00 11 0110000
Q ss_pred ------------hhcchHHHHHHHHHHHh----cCCeEEEEcCcchhhhhcCCcccccchhHHHHHHHHHHHHhcCCCCC
Q 007575 406 ------------VGMGASRVRDLFARAKK----EAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSN 469 (597)
Q Consensus 406 ------------vG~~e~~vr~lF~~A~~----~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~eqtLnqLL~emdg~~~~ 469 (597)
..-+...+|++.+.+.. +...|++||++|.+.. ..-|.||..|+ +++
T Consensus 98 ~~~~~~k~~~~~~~I~idqiR~l~~~~~~~~~~~~~kV~iI~~ae~m~~---------------~AaNaLLKtLE--EPp 160 (342)
T PRK06964 98 ADEGGKKTKAPSKEIKIEQVRALLDFCGVGTHRGGARVVVLYPAEALNV---------------AAANALLKTLE--EPP 160 (342)
T ss_pred hhcccccccccccccCHHHHHHHHHHhccCCccCCceEEEEechhhcCH---------------HHHHHHHHHhc--CCC
Confidence 01123566777665532 2345999999999853 35599999999 567
Q ss_pred CcEEEEEecCCCCCCChhhhCCCCcceEEEecCCCHHHHHHHHHHH
Q 007575 470 SAVIVLGATNRSDVLDPALRRPGRFDRVVMVETPDKIGREAILKVH 515 (597)
Q Consensus 470 ~~VIVIaaTNrpd~LD~aLlRpgRFd~~I~v~~Pd~~eR~eILk~~ 515 (597)
.++++|.+|++++.|.|.+++ |+ ..+.|++|+.++..+.|...
T Consensus 161 ~~t~fiL~t~~~~~LLpTI~S--Rc-q~i~~~~~~~~~~~~~L~~~ 203 (342)
T PRK06964 161 PGTVFLLVSARIDRLLPTILS--RC-RQFPMTVPAPEAAAAWLAAQ 203 (342)
T ss_pred cCcEEEEEECChhhCcHHHHh--cC-EEEEecCCCHHHHHHHHHHc
Confidence 788999999999999999999 88 48999999998888888653
No 216
>PRK13406 bchD magnesium chelatase subunit D; Provisional
Probab=98.83 E-value=3e-08 Score=112.51 Aligned_cols=194 Identities=14% Similarity=0.107 Sum_probs=133.7
Q ss_pred CceEEeCCCCChHHHHHHHHHHhcC--CCeeeechhhhHHHHhhcc--hHH--------HHHHHHHHHhcCCeEEEEcCc
Q 007575 366 RGVLLVGLPGTGKTLLAKAVAGEAE--VPFISCSASEFVELYVGMG--ASR--------VRDLFARAKKEAPSIIFIDEI 433 (597)
Q Consensus 366 ~gVLL~GPPGTGKT~LArAIA~el~--~pfi~is~sef~~~~vG~~--e~~--------vr~lF~~A~~~aP~ILfIDEI 433 (597)
.||||.|++||||++++++++.-+. .||..+..+--....+|.. ++. -..++..|..+ |||+||+
T Consensus 26 gGv~i~g~~G~~ks~~~r~l~~llp~~~p~r~~p~~~t~~~L~Gg~Dl~~~l~~g~~~~~pGlla~Ah~G---vL~lDe~ 102 (584)
T PRK13406 26 GGVVLRARAGPVRDRWLAALRALLPAGTPLRRLPPGIADDRLLGGLDLAATLRAGRPVAQRGLLAEADGG---VLVLAMA 102 (584)
T ss_pred ceEEEEcCCCcHHHHHHHHHHHhcCCCCCcccCCCCCcHHHccCCchHHhHhhcCCcCCCCCceeeccCC---EEEecCc
Confidence 5899999999999999999999875 5888877665445555543 111 12334444333 9999999
Q ss_pred chhhhhcCCcccccchhHHHHHHHHHHHHhcCC-----------CCCCcEEEEEecCCC---CCCChhhhCCCCcceEEE
Q 007575 434 DAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGF-----------DSNSAVIVLGATNRS---DVLDPALRRPGRFDRVVM 499 (597)
Q Consensus 434 DaL~~~r~~~~~~~~~~e~eqtLnqLL~emdg~-----------~~~~~VIVIaaTNrp---d~LD~aLlRpgRFd~~I~ 499 (597)
..+. ..+++.|+.-|+.- .-...++||++-|.. ..|.++++. ||+.+|.
T Consensus 103 n~~~---------------~~~~~aLleame~G~vtIeR~G~s~~~Pa~F~LIat~~~~~~~~~L~~~lLD--Rf~l~v~ 165 (584)
T PRK13406 103 ERLE---------------PGTAARLAAALDTGEVRLERDGLALRLPARFGLVALDEGAEEDERAPAALAD--RLAFHLD 165 (584)
T ss_pred ccCC---------------HHHHHHHHHHHhCCcEEEEECCcEEecCCCcEEEecCCChhcccCCCHHhHh--heEEEEE
Confidence 7764 35778889888742 123568888874432 458899999 9999999
Q ss_pred ecCCCHHHH-------HHHHHHHHhcCCCCCCCCCCHHHHHHhC--CCC-CHHHHHHHHHHHHHHHHhcCCCcccHHHHH
Q 007575 500 VETPDKIGR-------EAILKVHVSKKELPLAKDIDLGDIASMT--TGF-TGADLANLVNEAALLAGRLNKVVVEKIDFI 569 (597)
Q Consensus 500 v~~Pd~~eR-------~eILk~~l~~~~~~l~~dvdl~~LA~~t--~G~-SgaDL~~Lv~eAal~A~r~~~~~It~~d~~ 569 (597)
++.|+..+. .+|.+..-.-.+..+.+. .++.++..+ .|. |.+--..+++-|..+|..++...|+.+|+.
T Consensus 166 v~~~~~~~~~~~~~~~~~I~~AR~rl~~v~v~~~-~l~~i~~~~~~~gv~S~Ra~i~llraARa~AaL~Gr~~V~~~dv~ 244 (584)
T PRK13406 166 LDGLALRDAREIPIDADDIAAARARLPAVGPPPE-AIAALCAAAAALGIASLRAPLLALRAARAAAALAGRTAVEEEDLA 244 (584)
T ss_pred cCCCChHHhcccCCCHHHHHHHHHHHccCCCCHH-HHHHHHHHHHHhCCCCcCHHHHHHHHHHHHHHHcCCCCCCHHHHH
Confidence 998875432 233333221123344333 244444332 354 677778899999999999999999999999
Q ss_pred HHHHHHhcccc
Q 007575 570 HAVERSIAVSL 580 (597)
Q Consensus 570 ~Al~~v~~g~~ 580 (597)
+|+.-++.--.
T Consensus 245 ~Aa~lvL~hR~ 255 (584)
T PRK13406 245 LAARLVLAPRA 255 (584)
T ss_pred HHHHHHHHhhc
Confidence 99998886543
No 217
>PRK07952 DNA replication protein DnaC; Validated
Probab=98.82 E-value=5e-08 Score=99.61 Aligned_cols=132 Identities=17% Similarity=0.248 Sum_probs=80.4
Q ss_pred CCcccccccC-ChHHHHHHHHHHHHhcChhHHhhcCCCCCCceEEeCCCCChHHHHHHHHHHhc---CCCeeeechhhhH
Q 007575 327 DTITFADVAG-VDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEA---EVPFISCSASEFV 402 (597)
Q Consensus 327 ~~vtf~dV~G-~de~k~~L~eiv~~l~~p~~~~~lg~~~p~gVLL~GPPGTGKT~LArAIA~el---~~pfi~is~sef~ 402 (597)
...+|++..- .++.+..+..+..+..... ....+++|+|+||||||+|+.++|.++ +..++.++..++.
T Consensus 67 ~~~tFdnf~~~~~~q~~al~~a~~~~~~~~-------~~~~~~~l~G~~GtGKThLa~aia~~l~~~g~~v~~it~~~l~ 139 (244)
T PRK07952 67 QNCSFENYRVECEGQMNALSKARQYVEEFD-------GNIASFIFSGKPGTGKNHLAAAICNELLLRGKSVLIITVADIM 139 (244)
T ss_pred cCCccccccCCCchHHHHHHHHHHHHHhhc-------cCCceEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEHHHHH
Confidence 4567877653 3344444555554443211 113489999999999999999999987 7888899998887
Q ss_pred HHHhhc---chHHHHHHHHHHHhcCCeEEEEcCcchhhhhcCCcccccchhHHHHHHHHHHHHhcCCCCCCcEEEEEecC
Q 007575 403 ELYVGM---GASRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATN 479 (597)
Q Consensus 403 ~~~vG~---~e~~vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~eqtLnqLL~emdg~~~~~~VIVIaaTN 479 (597)
..+... ......++++... ..++|+|||++... ..+.....+.+++..-. . ....+|.+||
T Consensus 140 ~~l~~~~~~~~~~~~~~l~~l~--~~dlLvIDDig~~~----------~s~~~~~~l~~Ii~~Ry--~--~~~~tiitSN 203 (244)
T PRK07952 140 SAMKDTFSNSETSEEQLLNDLS--NVDLLVIDEIGVQT----------ESRYEKVIINQIVDRRS--S--SKRPTGMLTN 203 (244)
T ss_pred HHHHHHHhhccccHHHHHHHhc--cCCEEEEeCCCCCC----------CCHHHHHHHHHHHHHHH--h--CCCCEEEeCC
Confidence 654332 1122334454433 45699999998753 12233345566655421 1 1224555787
Q ss_pred CC
Q 007575 480 RS 481 (597)
Q Consensus 480 rp 481 (597)
..
T Consensus 204 l~ 205 (244)
T PRK07952 204 SN 205 (244)
T ss_pred CC
Confidence 64
No 218
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=98.82 E-value=3.3e-08 Score=97.02 Aligned_cols=184 Identities=28% Similarity=0.366 Sum_probs=94.7
Q ss_pred cCChHHHHHHHHHHHHhcChhHHhhcCCCCCCceEEeCCCCChHHHHHHHHHHhcC-----CCeeeechh----hhHHH-
Q 007575 335 AGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAE-----VPFISCSAS----EFVEL- 404 (597)
Q Consensus 335 ~G~de~k~~L~eiv~~l~~p~~~~~lg~~~p~gVLL~GPPGTGKT~LArAIA~el~-----~pfi~is~s----ef~~~- 404 (597)
+|.++..+.|.+++.. .....++|+||.|+|||+|++.+..+.. +.++..... .+...
T Consensus 2 ~gR~~el~~l~~~l~~------------~~~~~~~l~G~rg~GKTsLl~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~ 69 (234)
T PF01637_consen 2 FGREKELEKLKELLES------------GPSQHILLYGPRGSGKTSLLKEFINELKEKGYKVVYIDFLEESNESSLRSFI 69 (234)
T ss_dssp -S-HHHHHHHHHCHHH--------------SSEEEEEESTTSSHHHHHHHHHHHCT--EECCCHHCCTTBSHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHh------------hcCcEEEEEcCCcCCHHHHHHHHHHHhhhcCCcEEEEecccchhhhHHHHHH
Confidence 4555555555554431 1245799999999999999999999872 222211000 00000
Q ss_pred ------------H----h------------hcchHHHHHHHHHHHhcC-CeEEEEcCcchhh-hhcCCcccccchhHHHH
Q 007575 405 ------------Y----V------------GMGASRVRDLFARAKKEA-PSIIFIDEIDAVA-KSRDGRFRIVSNDEREQ 454 (597)
Q Consensus 405 ------------~----v------------G~~e~~vr~lF~~A~~~a-P~ILfIDEIDaL~-~~r~~~~~~~~~~e~eq 454 (597)
. . ......+..+++...... ..||+|||+|.+. .... ...
T Consensus 70 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~iiviDe~~~~~~~~~~----------~~~ 139 (234)
T PF01637_consen 70 EETSLADELSEALGISIPSITLEKISKDLSEDSFSALERLLEKLKKKGKKVIIVIDEFQYLAIASEE----------DKD 139 (234)
T ss_dssp HHHHHHCHCHHHHHHHCCTSTTEEEECTS-GG-G--HHHHHHHHHHCHCCEEEEEETGGGGGBCTTT----------THH
T ss_pred HHHHHHHHHHHHHhhhcccccchhhhhcchhhHHHHHHHHHHHHHhcCCcEEEEEecHHHHhhcccc----------hHH
Confidence 0 0 112344566666665543 4899999999997 2221 133
Q ss_pred HHHHHHHHhcCCCCCCcE-EEEEecCCC---C--CCChhhhCCCCcceEEEecCCCHHHHHHHHHHHHhcCCCCC-CCCC
Q 007575 455 TLNQLLTEMDGFDSNSAV-IVLGATNRS---D--VLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPL-AKDI 527 (597)
Q Consensus 455 tLnqLL~emdg~~~~~~V-IVIaaTNrp---d--~LD~aLlRpgRFd~~I~v~~Pd~~eR~eILk~~l~~~~~~l-~~dv 527 (597)
.+..|...++.......+ +|++++... + .-...+. +|+.. +.+++.+.++..++++..+.+. ..+ .++.
T Consensus 140 ~~~~l~~~~~~~~~~~~~~~v~~~S~~~~~~~~~~~~~~~~--~~~~~-~~l~~l~~~e~~~~~~~~~~~~-~~~~~~~~ 215 (234)
T PF01637_consen 140 FLKSLRSLLDSLLSQQNVSIVITGSSDSLMEEFLDDKSPLF--GRFSH-IELKPLSKEEAREFLKELFKEL-IKLPFSDE 215 (234)
T ss_dssp HHHHHHHHHHH----TTEEEEEEESSHHHHHHTT-TTSTTT--T---E-EEE----HHHHHHHHHHHHHCC-------HH
T ss_pred HHHHHHHHHhhccccCCceEEEECCchHHHHHhhcccCccc--cccce-EEEeeCCHHHHHHHHHHHHHHh-hcccCCHH
Confidence 445555555543333444 444444321 1 1122233 37776 9999999999999999988764 333 2344
Q ss_pred CHHHHHHhCCCCCHHHHH
Q 007575 528 DLGDIASMTTGFTGADLA 545 (597)
Q Consensus 528 dl~~LA~~t~G~SgaDL~ 545 (597)
+++.+...+.|. |+.|.
T Consensus 216 ~~~~i~~~~gG~-P~~l~ 232 (234)
T PF01637_consen 216 DIEEIYSLTGGN-PRYLQ 232 (234)
T ss_dssp HHHHHHHHHTT--HHHHH
T ss_pred HHHHHHHHhCCC-HHHHh
Confidence 678888888774 55554
No 219
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=98.81 E-value=1.1e-07 Score=100.95 Aligned_cols=134 Identities=18% Similarity=0.303 Sum_probs=96.6
Q ss_pred CCCCCceEEeCCCCChHHHHHHHHHHhcCCC-------eeee-ch--------hhhHHHH--hh--cchHHHHHHHHHHH
Q 007575 362 ARPPRGVLLVGLPGTGKTLLAKAVAGEAEVP-------FISC-SA--------SEFVELY--VG--MGASRVRDLFARAK 421 (597)
Q Consensus 362 ~~~p~gVLL~GPPGTGKT~LArAIA~el~~p-------fi~i-s~--------sef~~~~--vG--~~e~~vr~lF~~A~ 421 (597)
.+.|.++||+||+|+||+++|+++|+.+.+. .=.| +| +|+.... .| -+...+|++.+.+.
T Consensus 21 ~rl~HA~Lf~G~~G~GK~~lA~~~A~~llC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~p~~~~~I~id~iR~l~~~~~ 100 (325)
T PRK06871 21 GLGHHALLFKADSGLGTEQLIRALAQWLMCQTPQGDQPCGQCHSCHLFQAGNHPDFHILEPIDNKDIGVDQVREINEKVS 100 (325)
T ss_pred CCcceeEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCEEEEccccCCCCCHHHHHHHHHHHh
Confidence 3567789999999999999999999976431 1000 01 1111000 11 24567777766654
Q ss_pred h----cCCeEEEEcCcchhhhhcCCcccccchhHHHHHHHHHHHHhcCCCCCCcEEEEEecCCCCCCChhhhCCCCcceE
Q 007575 422 K----EAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATNRSDVLDPALRRPGRFDRV 497 (597)
Q Consensus 422 ~----~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~eqtLnqLL~emdg~~~~~~VIVIaaTNrpd~LD~aLlRpgRFd~~ 497 (597)
. +...|++||++|.+.. ...|.||..|+ +++..+++|.+|+.++.|.|.+++ |.. .
T Consensus 101 ~~~~~g~~KV~iI~~a~~m~~---------------~AaNaLLKtLE--EPp~~~~fiL~t~~~~~llpTI~S--RC~-~ 160 (325)
T PRK06871 101 QHAQQGGNKVVYIQGAERLTE---------------AAANALLKTLE--EPRPNTYFLLQADLSAALLPTIYS--RCQ-T 160 (325)
T ss_pred hccccCCceEEEEechhhhCH---------------HHHHHHHHHhc--CCCCCeEEEEEECChHhCchHHHh--hce-E
Confidence 3 3346999999999863 34599999999 466778888899999999999998 774 7
Q ss_pred EEecCCCHHHHHHHHHHH
Q 007575 498 VMVETPDKIGREAILKVH 515 (597)
Q Consensus 498 I~v~~Pd~~eR~eILk~~ 515 (597)
+.+.+|+.++..+.|...
T Consensus 161 ~~~~~~~~~~~~~~L~~~ 178 (325)
T PRK06871 161 WLIHPPEEQQALDWLQAQ 178 (325)
T ss_pred EeCCCCCHHHHHHHHHHH
Confidence 899999998888877764
No 220
>PRK10365 transcriptional regulatory protein ZraR; Provisional
Probab=98.76 E-value=2.4e-08 Score=109.09 Aligned_cols=205 Identities=22% Similarity=0.320 Sum_probs=121.5
Q ss_pred cccCChHHHHHHHHHHHHhcChhHHhhcCCCCCCceEEeCCCCChHHHHHHHHHHhc---CCCeeeechhhhHHHHh---
Q 007575 333 DVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEA---EVPFISCSASEFVELYV--- 406 (597)
Q Consensus 333 dV~G~de~k~~L~eiv~~l~~p~~~~~lg~~~p~gVLL~GPPGTGKT~LArAIA~el---~~pfi~is~sef~~~~v--- 406 (597)
.++|.......+.+-+..+. .....++++|++||||+++|+++.... +.||+.++|..+.....
T Consensus 140 ~lig~s~~~~~~~~~i~~~~----------~~~~~vli~ge~g~gk~~~a~~ih~~s~~~~~~~i~~~c~~~~~~~~~~~ 209 (441)
T PRK10365 140 GMVGKSPAMQHLLSEIALVA----------PSEATVLIHGDSGTGKELVARAIHASSARSEKPLVTLNCAALNESLLESE 209 (441)
T ss_pred ceEecCHHHHHHHHHHhhcc----------CCCCeEEEEecCCCCHHHHHHHHHHcCCCCCCCeeeeeCCCCCHHHHHHH
Confidence 35666666555544444332 224569999999999999999997654 58999999986533221
Q ss_pred --hcch-------HHHHHHHHHHHhcCCeEEEEcCcchhhhhcCCcccccchhHHHHHHHHHHHHhcCCC-----C----
Q 007575 407 --GMGA-------SRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFD-----S---- 468 (597)
Q Consensus 407 --G~~e-------~~vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~eqtLnqLL~emdg~~-----~---- 468 (597)
|... .....+|..| ..++|||||||.|....+ ..|+..++.-. .
T Consensus 210 lfg~~~~~~~~~~~~~~g~~~~a---~~gtl~ldei~~l~~~~q---------------~~l~~~l~~~~~~~~~~~~~~ 271 (441)
T PRK10365 210 LFGHEKGAFTGADKRREGRFVEA---DGGTLFLDEIGDISPMMQ---------------VRLLRAIQEREVQRVGSNQTI 271 (441)
T ss_pred hcCCCCCCcCCCCcCCCCceeEC---CCCEEEEeccccCCHHHH---------------HHHHHHHccCcEEeCCCCcee
Confidence 1100 0001122222 356999999999975432 44555554211 1
Q ss_pred CCcEEEEEecCCCCCCChhhhCCCCcce-------EEEecCCCHHHHHH----HHHHHHhc----CCC---CCCCCCCHH
Q 007575 469 NSAVIVLGATNRSDVLDPALRRPGRFDR-------VVMVETPDKIGREA----ILKVHVSK----KEL---PLAKDIDLG 530 (597)
Q Consensus 469 ~~~VIVIaaTNrpd~LD~aLlRpgRFd~-------~I~v~~Pd~~eR~e----ILk~~l~~----~~~---~l~~dvdl~ 530 (597)
...+.+|++|+.+- ..+..+|+|.. .+.+..|...+|.+ ++..++.+ .+. .+.++ .+.
T Consensus 272 ~~~~rii~~t~~~~---~~~~~~~~~~~~l~~~l~~~~i~~ppLreR~~Di~~l~~~~l~~~~~~~~~~~~~~~~~-a~~ 347 (441)
T PRK10365 272 SVDVRLIAATHRDL---AAEVNAGRFRQDLYYRLNVVAIEVPSLRQRREDIPLLAGHFLQRFAERNRKAVKGFTPQ-AMD 347 (441)
T ss_pred eeceEEEEeCCCCH---HHHHHcCCchHHHHHHhccceecCCChhhcchhHHHHHHHHHHHHHHHhCCCCCCcCHH-HHH
Confidence 12467888887641 23334445532 56777788777753 44444432 111 12222 356
Q ss_pred HHHHhCCCCCHHHHHHHHHHHHHHHHhcCCCcccHHHHHHHH
Q 007575 531 DIASMTTGFTGADLANLVNEAALLAGRLNKVVVEKIDFIHAV 572 (597)
Q Consensus 531 ~LA~~t~G~SgaDL~~Lv~eAal~A~r~~~~~It~~d~~~Al 572 (597)
.|..+.+.-+.++|.++++.|+..+ ....|+.+|+...+
T Consensus 348 ~L~~~~wpgN~reL~~~~~~~~~~~---~~~~i~~~~l~~~~ 386 (441)
T PRK10365 348 LLIHYDWPGNIRELENAVERAVVLL---TGEYISERELPLAI 386 (441)
T ss_pred HHHhCCCCCHHHHHHHHHHHHHHhC---CCCccchHhCchhh
Confidence 6666665567799999999988764 44567777775543
No 221
>PRK12377 putative replication protein; Provisional
Probab=98.76 E-value=6.7e-08 Score=98.89 Aligned_cols=70 Identities=19% Similarity=0.255 Sum_probs=49.8
Q ss_pred CCceEEeCCCCChHHHHHHHHHHhc---CCCeeeechhhhHHHHhhcc--hHHHHHHHHHHHhcCCeEEEEcCcchh
Q 007575 365 PRGVLLVGLPGTGKTLLAKAVAGEA---EVPFISCSASEFVELYVGMG--ASRVRDLFARAKKEAPSIIFIDEIDAV 436 (597)
Q Consensus 365 p~gVLL~GPPGTGKT~LArAIA~el---~~pfi~is~sef~~~~vG~~--e~~vr~lF~~A~~~aP~ILfIDEIDaL 436 (597)
..+++|+||||||||+||.|+|.++ +..++.++.+++.......- .....++++.. ....+|+|||++..
T Consensus 101 ~~~l~l~G~~GtGKThLa~AIa~~l~~~g~~v~~i~~~~l~~~l~~~~~~~~~~~~~l~~l--~~~dLLiIDDlg~~ 175 (248)
T PRK12377 101 CTNFVFSGKPGTGKNHLAAAIGNRLLAKGRSVIVVTVPDVMSRLHESYDNGQSGEKFLQEL--CKVDLLVLDEIGIQ 175 (248)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEEEHHHHHHHHHHHHhccchHHHHHHHh--cCCCEEEEcCCCCC
Confidence 3589999999999999999999986 67888888888876543210 01122334333 34569999999764
No 222
>KOG0745 consensus Putative ATP-dependent Clp-type protease (AAA+ ATPase superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.76 E-value=2.6e-08 Score=106.88 Aligned_cols=99 Identities=32% Similarity=0.582 Sum_probs=69.5
Q ss_pred CceEEeCCCCChHHHHHHHHHHhcCCCeeeechhhhHHH-HhhcchH-HHHHHHHHHH----hcCCeEEEEcCcchhhhh
Q 007575 366 RGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFVEL-YVGMGAS-RVRDLFARAK----KEAPSIIFIDEIDAVAKS 439 (597)
Q Consensus 366 ~gVLL~GPPGTGKT~LArAIA~el~~pfi~is~sef~~~-~vG~~e~-~vr~lF~~A~----~~aP~ILfIDEIDaL~~~ 439 (597)
.+|||.||+|+|||+||+.+|.-+++||..++|..+-.. |+|+... .+..++..|. +....||||||+|.|..+
T Consensus 227 SNvLllGPtGsGKTllaqTLAr~ldVPfaIcDcTtLTQAGYVGeDVEsvi~KLl~~A~~nVekAQqGIVflDEvDKi~~~ 306 (564)
T KOG0745|consen 227 SNVLLLGPTGSGKTLLAQTLARVLDVPFAICDCTTLTQAGYVGEDVESVIQKLLQEAEYNVEKAQQGIVFLDEVDKITKK 306 (564)
T ss_pred ccEEEECCCCCchhHHHHHHHHHhCCCeEEecccchhhcccccccHHHHHHHHHHHccCCHHHHhcCeEEEehhhhhccc
Confidence 379999999999999999999999999999999988543 8887543 4455554442 223459999999999855
Q ss_pred cCCcccccchhHHHHHHHHHHHHhcC
Q 007575 440 RDGRFRIVSNDEREQTLNQLLTEMDG 465 (597)
Q Consensus 440 r~~~~~~~~~~e~eqtLnqLL~emdg 465 (597)
...-. ..-+=.-+.+...||..++|
T Consensus 307 ~~~i~-~~RDVsGEGVQQaLLKllEG 331 (564)
T KOG0745|consen 307 AESIH-TSRDVSGEGVQQALLKLLEG 331 (564)
T ss_pred Ccccc-ccccccchhHHHHHHHHhcc
Confidence 43210 00011124455667777775
No 223
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=98.75 E-value=6.5e-08 Score=102.35 Aligned_cols=133 Identities=19% Similarity=0.268 Sum_probs=93.0
Q ss_pred CCCCCceEEeCCCCChHHHHHHHHHHhcCCCe----eeech---------hhhHHH--H---hh------cchHHHHHHH
Q 007575 362 ARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPF----ISCSA---------SEFVEL--Y---VG------MGASRVRDLF 417 (597)
Q Consensus 362 ~~~p~gVLL~GPPGTGKT~LArAIA~el~~pf----i~is~---------sef~~~--~---vG------~~e~~vr~lF 417 (597)
.+.|..+||+||+|+||+++|.++|..+-+.- -.+.+ +|+.-. . .| .+.+.+|++.
T Consensus 23 ~rl~HA~Lf~Gp~G~GK~~lA~~lA~~LlC~~~~~~~~c~~c~~~~~g~HPD~~~i~~~p~~~~~k~~~~I~idqIR~l~ 102 (319)
T PRK08769 23 GRLGHGLLICGPEGLGKRAVALALAEHVLASGPDPAAAQRTRQLIAAGTHPDLQLVSFIPNRTGDKLRTEIVIEQVREIS 102 (319)
T ss_pred CCcceeEeeECCCCCCHHHHHHHHHHHHhCCCCCCCCcchHHHHHhcCCCCCEEEEecCCCcccccccccccHHHHHHHH
Confidence 45677899999999999999999998763310 00111 111100 0 01 1245667776
Q ss_pred HHHHhc----CCeEEEEcCcchhhhhcCCcccccchhHHHHHHHHHHHHhcCCCCCCcEEEEEecCCCCCCChhhhCCCC
Q 007575 418 ARAKKE----APSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATNRSDVLDPALRRPGR 493 (597)
Q Consensus 418 ~~A~~~----aP~ILfIDEIDaL~~~r~~~~~~~~~~e~eqtLnqLL~emdg~~~~~~VIVIaaTNrpd~LD~aLlRpgR 493 (597)
+.+... .-.|++||++|.+.. ...|.||+.|+. +..++++|..|+.++.|.|.+++ |
T Consensus 103 ~~~~~~p~~g~~kV~iI~~ae~m~~---------------~AaNaLLKtLEE--Pp~~~~fiL~~~~~~~lLpTIrS--R 163 (319)
T PRK08769 103 QKLALTPQYGIAQVVIVDPADAINR---------------AACNALLKTLEE--PSPGRYLWLISAQPARLPATIRS--R 163 (319)
T ss_pred HHHhhCcccCCcEEEEeccHhhhCH---------------HHHHHHHHHhhC--CCCCCeEEEEECChhhCchHHHh--h
Confidence 655432 235999999999853 355999999994 45567777788889999999999 8
Q ss_pred cceEEEecCCCHHHHHHHHHH
Q 007575 494 FDRVVMVETPDKIGREAILKV 514 (597)
Q Consensus 494 Fd~~I~v~~Pd~~eR~eILk~ 514 (597)
+. .+.|..|+.++-.+.|..
T Consensus 164 Cq-~i~~~~~~~~~~~~~L~~ 183 (319)
T PRK08769 164 CQ-RLEFKLPPAHEALAWLLA 183 (319)
T ss_pred he-EeeCCCcCHHHHHHHHHH
Confidence 75 789999998877777754
No 224
>PF14532 Sigma54_activ_2: Sigma-54 interaction domain; PDB: 3CO5_B 3N70_H.
Probab=98.75 E-value=7.5e-09 Score=95.95 Aligned_cols=81 Identities=30% Similarity=0.485 Sum_probs=56.9
Q ss_pred cCChHHHHHHHHHHHHhcChhHHhhcCCCCCCceEEeCCCCChHHHHHHHHHHhcC---CCeeeechhhhHHHHhhcchH
Q 007575 335 AGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAE---VPFISCSASEFVELYVGMGAS 411 (597)
Q Consensus 335 ~G~de~k~~L~eiv~~l~~p~~~~~lg~~~p~gVLL~GPPGTGKT~LArAIA~el~---~pfi~is~sef~~~~vG~~e~ 411 (597)
+|.....+++.+-+..+.. ....|||+|++||||+++|+++....+ .||+.++|..+.
T Consensus 1 vG~S~~~~~l~~~l~~~a~----------~~~pvli~GE~GtGK~~~A~~lh~~~~~~~~~~~~~~~~~~~--------- 61 (138)
T PF14532_consen 1 VGKSPAMRRLRRQLERLAK----------SSSPVLITGEPGTGKSLLARALHRYSGRANGPFIVIDCASLP--------- 61 (138)
T ss_dssp --SCHHHHHHHHHHHHHHC----------SSS-EEEECCTTSSHHHHHHCCHHTTTTCCS-CCCCCHHCTC---------
T ss_pred CCCCHHHHHHHHHHHHHhC----------CCCcEEEEcCCCCCHHHHHHHHHhhcCccCCCeEEechhhCc---------
Confidence 4666677777777765433 234699999999999999999988764 588888887643
Q ss_pred HHHHHHHHHHhcCCeEEEEcCcchhhhh
Q 007575 412 RVRDLFARAKKEAPSIIFIDEIDAVAKS 439 (597)
Q Consensus 412 ~vr~lF~~A~~~aP~ILfIDEIDaL~~~ 439 (597)
.++++.+ ....|||+|||.|...
T Consensus 62 --~~~l~~a---~~gtL~l~~i~~L~~~ 84 (138)
T PF14532_consen 62 --AELLEQA---KGGTLYLKNIDRLSPE 84 (138)
T ss_dssp --HHHHHHC---TTSEEEEECGCCS-HH
T ss_pred --HHHHHHc---CCCEEEECChHHCCHH
Confidence 4456655 4449999999999654
No 225
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=98.73 E-value=1.5e-07 Score=100.22 Aligned_cols=133 Identities=17% Similarity=0.282 Sum_probs=95.7
Q ss_pred CCCCCceEEeCCCCChHHHHHHHHHHhcCCC-------eeee-ch--------hhhHHHHh-----hcchHHHHHHHHHH
Q 007575 362 ARPPRGVLLVGLPGTGKTLLAKAVAGEAEVP-------FISC-SA--------SEFVELYV-----GMGASRVRDLFARA 420 (597)
Q Consensus 362 ~~~p~gVLL~GPPGTGKT~LArAIA~el~~p-------fi~i-s~--------sef~~~~v-----G~~e~~vr~lF~~A 420 (597)
.+.|..+||+||+|+||+++|.++|..+-+. .=.| +| +|+..... .-+.+.+|++.+.+
T Consensus 21 ~rl~HA~Lf~G~~G~Gk~~lA~~~A~~LlC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~p~~~~~~I~idqiR~l~~~~ 100 (334)
T PRK07993 21 GRGHHALLIQALPGMGDDALIYALSRWLMCQQPQGHKSCGHCRGCQLMQAGTHPDYYTLTPEKGKSSLGVDAVREVTEKL 100 (334)
T ss_pred CCcceEEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCCEEEEecccccccCCHHHHHHHHHHH
Confidence 4678899999999999999999999876331 1000 11 11110000 12345677776665
Q ss_pred Hh----cCCeEEEEcCcchhhhhcCCcccccchhHHHHHHHHHHHHhcCCCCCCcEEEEEecCCCCCCChhhhCCCCcce
Q 007575 421 KK----EAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATNRSDVLDPALRRPGRFDR 496 (597)
Q Consensus 421 ~~----~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~eqtLnqLL~emdg~~~~~~VIVIaaTNrpd~LD~aLlRpgRFd~ 496 (597)
.. +...|++||++|.+.. +.-|.||+.|+ +++.+.++|..|+.++.|.|.+++ |..
T Consensus 101 ~~~~~~g~~kV~iI~~ae~m~~---------------~AaNaLLKtLE--EPp~~t~fiL~t~~~~~lLpTIrS--RCq- 160 (334)
T PRK07993 101 YEHARLGGAKVVWLPDAALLTD---------------AAANALLKTLE--EPPENTWFFLACREPARLLATLRS--RCR- 160 (334)
T ss_pred hhccccCCceEEEEcchHhhCH---------------HHHHHHHHHhc--CCCCCeEEEEEECChhhChHHHHh--ccc-
Confidence 43 3456999999999863 45599999999 466788899999999999999999 776
Q ss_pred EEEecCCCHHHHHHHHHH
Q 007575 497 VVMVETPDKIGREAILKV 514 (597)
Q Consensus 497 ~I~v~~Pd~~eR~eILk~ 514 (597)
.+.+++|+.++..+.|..
T Consensus 161 ~~~~~~~~~~~~~~~L~~ 178 (334)
T PRK07993 161 LHYLAPPPEQYALTWLSR 178 (334)
T ss_pred cccCCCCCHHHHHHHHHH
Confidence 689999998887777754
No 226
>PF07726 AAA_3: ATPase family associated with various cellular activities (AAA); InterPro: IPR011703 This entry includes some of the AAA proteins not detected by the IPR003959 from INTERPRO model. AAA ATPases form a large, functionally diverse protein family belonging to the AAA+ superfamily of ring-shaped P-loop NTPases, which exert their activity through the energy-dependent unfolding of macromolecules. AAA ATPases contain a P-loop NTPase domain, which is the most abundant class of NTP-binding protein fold, and is found throughout all kingdoms of life []. P-loop NTPase domains act to hydrolyse the beta-gamma phosphate bond of bound nucleoside triphosphate. There are two classes of P-loop domains: the KG (kinase-GTPase) division, and the ASCE division, the latter including the AAA+ group as well as several other ATPases. There are at least six major clades of AAA domains (metalloproteases, meiotic proteins, D1 and D2 domains of ATPases with two AAA domains, proteasome subunits, and BSC1), as well as several minor clades, some of which consist of hypothetical proteins []. The domain organisation of AAA ATPases consists of a non-ATPase N-terminal domain that acts in substrate recognition, followed by one or two AAA domains (D1 and D2), one of which may be degenerate.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 2R44_A.
Probab=98.70 E-value=3.3e-09 Score=97.70 Aligned_cols=112 Identities=28% Similarity=0.336 Sum_probs=60.4
Q ss_pred ceEEeCCCCChHHHHHHHHHHhcCCCeeeechh-hh-HHHHhhcchHHHH-HHHHHHHh-cCCeEEEEcCcchhhhhcCC
Q 007575 367 GVLLVGLPGTGKTLLAKAVAGEAEVPFISCSAS-EF-VELYVGMGASRVR-DLFARAKK-EAPSIIFIDEIDAVAKSRDG 442 (597)
Q Consensus 367 gVLL~GPPGTGKT~LArAIA~el~~pfi~is~s-ef-~~~~vG~~e~~vr-~lF~~A~~-~aP~ILfIDEIDaL~~~r~~ 442 (597)
+|||.|+||+|||++|+++|+.++..|..|.+. ++ .+...|..--.-. ..|+..+. --..|+++|||....+
T Consensus 1 HvLleg~PG~GKT~la~~lA~~~~~~f~RIq~tpdllPsDi~G~~v~~~~~~~f~~~~GPif~~ill~DEiNrapp---- 76 (131)
T PF07726_consen 1 HVLLEGVPGVGKTTLAKALARSLGLSFKRIQFTPDLLPSDILGFPVYDQETGEFEFRPGPIFTNILLADEINRAPP---- 76 (131)
T ss_dssp -EEEES---HHHHHHHHHHHHHTT--EEEEE--TT--HHHHHEEEEEETTTTEEEEEE-TT-SSEEEEETGGGS-H----
T ss_pred CEeeECCCccHHHHHHHHHHHHcCCceeEEEecCCCCcccceeeeeeccCCCeeEeecChhhhceeeecccccCCH----
Confidence 489999999999999999999999999888764 33 2223332100000 00000000 0013999999977653
Q ss_pred cccccchhHHHHHHHHHHHHhcCC---------CCCCcEEEEEecCCCC-----CCChhhhCCCCcc
Q 007575 443 RFRIVSNDEREQTLNQLLTEMDGF---------DSNSAVIVLGATNRSD-----VLDPALRRPGRFD 495 (597)
Q Consensus 443 ~~~~~~~~e~eqtLnqLL~emdg~---------~~~~~VIVIaaTNrpd-----~LD~aLlRpgRFd 495 (597)
++.+.||..|.+. .-...++||||-|..+ .|+++++. ||-
T Consensus 77 -----------ktQsAlLeam~Er~Vt~~g~~~~lp~pf~ViATqNp~e~~Gty~Lpea~~D--RF~ 130 (131)
T PF07726_consen 77 -----------KTQSALLEAMEERQVTIDGQTYPLPDPFFVIATQNPVEQEGTYPLPEAQLD--RFM 130 (131)
T ss_dssp -----------HHHHHHHHHHHHSEEEETTEEEE--SS-EEEEEE-TT--S------HHHHT--TSS
T ss_pred -----------HHHHHHHHHHHcCeEEeCCEEEECCCcEEEEEecCccccCceecCCHHHhc--ccc
Confidence 4557788777532 2245689999999875 68889888 873
No 227
>KOG0990 consensus Replication factor C, subunit RFC5 [Replication, recombination and repair]
Probab=98.69 E-value=9.2e-08 Score=99.55 Aligned_cols=190 Identities=18% Similarity=0.211 Sum_probs=120.6
Q ss_pred ccCCCCcccccccCChHHHHHHHHHHHHhcChhHHhhcCCCCCCceEEeCCCCChHHHHHHHHHHhcCCCeeeechhhhH
Q 007575 323 SEQGDTITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFV 402 (597)
Q Consensus 323 ~~~~~~vtf~dV~G~de~k~~L~eiv~~l~~p~~~~~lg~~~p~gVLL~GPPGTGKT~LArAIA~el~~pfi~is~sef~ 402 (597)
.+..++-+++|++++++....+.+..+.-+. | ++|+|||||||||....+.|..+-.|.=.- +-+.
T Consensus 32 vekyrP~~l~dv~~~~ei~st~~~~~~~~~l-----------P-h~L~YgPPGtGktsti~a~a~~ly~~~~~~--~m~l 97 (360)
T KOG0990|consen 32 VEKYRPPFLGIVIKQEPIWSTENRYSGMPGL-----------P-HLLFYGPPGTGKTSTILANARDFYSPHPTT--SMLL 97 (360)
T ss_pred ccCCCCchhhhHhcCCchhhHHHHhccCCCC-----------C-cccccCCCCCCCCCchhhhhhhhcCCCCch--hHHH
Confidence 4556678899999999998888877543222 2 799999999999999999999876651110 1111
Q ss_pred HHH----hhcch-HHHHHHHHHHHh-------cCCeEEEEcCcchhhhhcCCcccccchhHHHHHHHHHHHHhcCCCCCC
Q 007575 403 ELY----VGMGA-SRVRDLFARAKK-------EAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNS 470 (597)
Q Consensus 403 ~~~----vG~~e-~~vr~lF~~A~~-------~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~eqtLnqLL~emdg~~~~~ 470 (597)
+.. .|-.. +.-...|..++. ..+..|++||.|++....+ |+|-..++.+..+.
T Consensus 98 elnaSd~rgid~vr~qi~~fast~~~~~fst~~~fKlvILDEADaMT~~AQ---------------nALRRviek~t~n~ 162 (360)
T KOG0990|consen 98 ELNASDDRGIDPVRQQIHLFASTQQPTTYSTHAAFKLVILDEADAMTRDAQ---------------NALRRVIEKYTANT 162 (360)
T ss_pred HhhccCccCCcchHHHHHHHHhhccceeccccCceeEEEecchhHhhHHHH---------------HHHHHHHHHhccce
Confidence 111 11111 111234444442 3677999999999976543 55555666666554
Q ss_pred cEEEEEecCCCCCCChhhhCCCCcceEEEecCCCHHHHHHHHHHHHhcCCCCCCCCCCHHHHHHhCCCCCHHHHHHHHHH
Q 007575 471 AVIVLGATNRSDVLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTTGFTGADLANLVNE 550 (597)
Q Consensus 471 ~VIVIaaTNrpd~LD~aLlRpgRFd~~I~v~~Pd~~eR~eILk~~l~~~~~~l~~dvdl~~LA~~t~G~SgaDL~~Lv~e 550 (597)
.+. ..+|.+..+.|+++. ||. .+.+.+.+...-...+.+++........++ -...+++. +-+|++..++.
T Consensus 163 rF~--ii~n~~~ki~pa~qs--Rct-rfrf~pl~~~~~~~r~shi~e~e~~~~~~~-~~~a~~r~----s~gDmr~a~n~ 232 (360)
T KOG0990|consen 163 RFA--TISNPPQKIHPAQQS--RCT-RFRFAPLTMAQQTERQSHIRESEQKETNPE-GYSALGRL----SVGDMRVALNY 232 (360)
T ss_pred EEE--EeccChhhcCchhhc--ccc-cCCCCCCChhhhhhHHHHHHhcchhhcCHH-HHHHHHHH----hHHHHHHHHHH
Confidence 444 567999999999988 776 456777777777777887776544333322 12333333 33466665554
Q ss_pred H
Q 007575 551 A 551 (597)
Q Consensus 551 A 551 (597)
.
T Consensus 233 L 233 (360)
T KOG0990|consen 233 L 233 (360)
T ss_pred H
Confidence 3
No 228
>PRK08939 primosomal protein DnaI; Reviewed
Probab=98.68 E-value=1.5e-07 Score=99.18 Aligned_cols=132 Identities=23% Similarity=0.299 Sum_probs=77.3
Q ss_pred cccccccCCh-HHHHHHHHHHHHhcChhHHhhcCCCCCCceEEeCCCCChHHHHHHHHHHhc---CCCeeeechhhhHHH
Q 007575 329 ITFADVAGVD-EAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEA---EVPFISCSASEFVEL 404 (597)
Q Consensus 329 vtf~dV~G~d-e~k~~L~eiv~~l~~p~~~~~lg~~~p~gVLL~GPPGTGKT~LArAIA~el---~~pfi~is~sef~~~ 404 (597)
.+|+++...+ +....+..+.+++... .. ....+|++|+||+|||||+||.|+|.++ |.++..++.++|+..
T Consensus 124 atf~~~~~~~~~~~~~~~~~~~fi~~~---~~--~~~~~gl~L~G~~G~GKThLa~Aia~~l~~~g~~v~~~~~~~l~~~ 198 (306)
T PRK08939 124 ASLADIDLDDRDRLDALMAALDFLEAY---PP--GEKVKGLYLYGDFGVGKSYLLAAIANELAKKGVSSTLLHFPEFIRE 198 (306)
T ss_pred CcHHHhcCCChHHHHHHHHHHHHHHHh---hc--cCCCCeEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEEHHHHHHH
Confidence 5566665433 2333333344444321 11 1245799999999999999999999987 788888888888665
Q ss_pred Hhhc-chHHHHHHHHHHHhcCCeEEEEcCcchhhhhcCCcccccchhHHHHHHHHHHHH-hcCCCCCCcEEEEEecCCC
Q 007575 405 YVGM-GASRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTE-MDGFDSNSAVIVLGATNRS 481 (597)
Q Consensus 405 ~vG~-~e~~vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~eqtLnqLL~e-mdg~~~~~~VIVIaaTNrp 481 (597)
.... ....+.+.++... ...+|+||||.+-.. ..-.+..++..++.. |. ....+|.|||.+
T Consensus 199 lk~~~~~~~~~~~l~~l~--~~dlLiIDDiG~e~~---------s~~~~~~ll~~Il~~R~~-----~~~~ti~TSNl~ 261 (306)
T PRK08939 199 LKNSISDGSVKEKIDAVK--EAPVLMLDDIGAEQM---------SSWVRDEVLGVILQYRMQ-----EELPTFFTSNFD 261 (306)
T ss_pred HHHHHhcCcHHHHHHHhc--CCCEEEEecCCCccc---------cHHHHHHHHHHHHHHHHH-----CCCeEEEECCCC
Confidence 4321 1112344444433 345999999966421 112223445555432 22 123466688865
No 229
>PRK08181 transposase; Validated
Probab=98.67 E-value=1.1e-07 Score=98.44 Aligned_cols=71 Identities=20% Similarity=0.309 Sum_probs=51.7
Q ss_pred CCceEEeCCCCChHHHHHHHHHHhc---CCCeeeechhhhHHHHhhc-chHHHHHHHHHHHhcCCeEEEEcCcchhh
Q 007575 365 PRGVLLVGLPGTGKTLLAKAVAGEA---EVPFISCSASEFVELYVGM-GASRVRDLFARAKKEAPSIIFIDEIDAVA 437 (597)
Q Consensus 365 p~gVLL~GPPGTGKT~LArAIA~el---~~pfi~is~sef~~~~vG~-~e~~vr~lF~~A~~~aP~ILfIDEIDaL~ 437 (597)
..+++|+||||||||+||.|++.++ |..++.++..+++..+... ........++.. ..+.+|+|||++.+.
T Consensus 106 ~~nlll~Gp~GtGKTHLa~Aia~~a~~~g~~v~f~~~~~L~~~l~~a~~~~~~~~~l~~l--~~~dLLIIDDlg~~~ 180 (269)
T PRK08181 106 GANLLLFGPPGGGKSHLAAAIGLALIENGWRVLFTRTTDLVQKLQVARRELQLESAIAKL--DKFDLLILDDLAYVT 180 (269)
T ss_pred CceEEEEecCCCcHHHHHHHHHHHHHHcCCceeeeeHHHHHHHHHHHHhCCcHHHHHHHH--hcCCEEEEecccccc
Confidence 3579999999999999999998754 7788888888888765321 112233444443 245699999998764
No 230
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=98.65 E-value=3.1e-07 Score=97.23 Aligned_cols=133 Identities=20% Similarity=0.258 Sum_probs=94.3
Q ss_pred CCCCCceEEeCCCCChHHHHHHHHHHhcCCC------eeee-ch--------hhhHHHHh---h--cchHHHHHHHHHHH
Q 007575 362 ARPPRGVLLVGLPGTGKTLLAKAVAGEAEVP------FISC-SA--------SEFVELYV---G--MGASRVRDLFARAK 421 (597)
Q Consensus 362 ~~~p~gVLL~GPPGTGKT~LArAIA~el~~p------fi~i-s~--------sef~~~~v---G--~~e~~vr~lF~~A~ 421 (597)
.+.|..+||+||.|+||+.+|+++|..+-+. .=.+ +| +|+..... | .+...+|++.+.+.
T Consensus 22 ~rl~hA~L~~G~~G~Gk~~lA~~~a~~llC~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~p~~~~~~I~vdqiR~l~~~~~ 101 (319)
T PRK06090 22 GRIPGALLLQSDEGLGVESLVELFSRALLCQNYQSEACGFCHSCELMQSGNHPDLHVIKPEKEGKSITVEQIRQCNRLAQ 101 (319)
T ss_pred CCcceeEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHcCCCCCEEEEecCcCCCcCCHHHHHHHHHHHh
Confidence 4667889999999999999999999876321 0000 01 11111000 1 13356677655553
Q ss_pred h----cCCeEEEEcCcchhhhhcCCcccccchhHHHHHHHHHHHHhcCCCCCCcEEEEEecCCCCCCChhhhCCCCcceE
Q 007575 422 K----EAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATNRSDVLDPALRRPGRFDRV 497 (597)
Q Consensus 422 ~----~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~eqtLnqLL~emdg~~~~~~VIVIaaTNrpd~LD~aLlRpgRFd~~ 497 (597)
. +...|++||++|.+.. ..-|.||+.+++ ++.++++|..|+.++.|.|.+++ |.. .
T Consensus 102 ~~~~~~~~kV~iI~~ae~m~~---------------~AaNaLLKtLEE--Pp~~t~fiL~t~~~~~lLpTI~S--RCq-~ 161 (319)
T PRK06090 102 ESSQLNGYRLFVIEPADAMNE---------------SASNALLKTLEE--PAPNCLFLLVTHNQKRLLPTIVS--RCQ-Q 161 (319)
T ss_pred hCcccCCceEEEecchhhhCH---------------HHHHHHHHHhcC--CCCCeEEEEEECChhhChHHHHh--cce-e
Confidence 3 2346999999999853 345999999994 66778888899999999999999 875 7
Q ss_pred EEecCCCHHHHHHHHHH
Q 007575 498 VMVETPDKIGREAILKV 514 (597)
Q Consensus 498 I~v~~Pd~~eR~eILk~ 514 (597)
+.+++|+.++..+.+..
T Consensus 162 ~~~~~~~~~~~~~~L~~ 178 (319)
T PRK06090 162 WVVTPPSTAQAMQWLKG 178 (319)
T ss_pred EeCCCCCHHHHHHHHHH
Confidence 89999998888777754
No 231
>PRK06526 transposase; Provisional
Probab=98.63 E-value=1.4e-07 Score=96.98 Aligned_cols=100 Identities=21% Similarity=0.317 Sum_probs=63.0
Q ss_pred CCceEEeCCCCChHHHHHHHHHHhc---CCCeeeechhhhHHHHhhc-chHHHHHHHHHHHhcCCeEEEEcCcchhhhhc
Q 007575 365 PRGVLLVGLPGTGKTLLAKAVAGEA---EVPFISCSASEFVELYVGM-GASRVRDLFARAKKEAPSIIFIDEIDAVAKSR 440 (597)
Q Consensus 365 p~gVLL~GPPGTGKT~LArAIA~el---~~pfi~is~sef~~~~vG~-~e~~vr~lF~~A~~~aP~ILfIDEIDaL~~~r 440 (597)
+.+++|+||||||||+||.+++.++ |..++.+++++++...... ....+...+... ..+.+|+|||++.+...
T Consensus 98 ~~nlll~Gp~GtGKThLa~al~~~a~~~g~~v~f~t~~~l~~~l~~~~~~~~~~~~l~~l--~~~dlLIIDD~g~~~~~- 174 (254)
T PRK06526 98 KENVVFLGPPGTGKTHLAIGLGIRACQAGHRVLFATAAQWVARLAAAHHAGRLQAELVKL--GRYPLLIVDEVGYIPFE- 174 (254)
T ss_pred CceEEEEeCCCCchHHHHHHHHHHHHHCCCchhhhhHHHHHHHHHHHHhcCcHHHHHHHh--ccCCEEEEcccccCCCC-
Confidence 4579999999999999999998875 7777778888777654321 111223333332 34569999999876422
Q ss_pred CCcccccchhHHHHHHHHHHHHhcCCCCCCcEEEEEecCCC
Q 007575 441 DGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATNRS 481 (597)
Q Consensus 441 ~~~~~~~~~~e~eqtLnqLL~emdg~~~~~~VIVIaaTNrp 481 (597)
......+.+++....+ .. .+|.+||.+
T Consensus 175 ---------~~~~~~L~~li~~r~~---~~--s~IitSn~~ 201 (254)
T PRK06526 175 ---------PEAANLFFQLVSSRYE---RA--SLIVTSNKP 201 (254)
T ss_pred ---------HHHHHHHHHHHHHHHh---cC--CEEEEcCCC
Confidence 2223345555544322 22 255577775
No 232
>PF03215 Rad17: Rad17 cell cycle checkpoint protein
Probab=98.62 E-value=9.3e-07 Score=99.27 Aligned_cols=209 Identities=18% Similarity=0.199 Sum_probs=116.6
Q ss_pred cCCCCcccccccCChHHHHHHHHHHHHhcChhHHhhcCCCCCCceEEeCCCCChHHHHHHHHHHhcCCCeeeec-hhhhH
Q 007575 324 EQGDTITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCS-ASEFV 402 (597)
Q Consensus 324 ~~~~~vtf~dV~G~de~k~~L~eiv~~l~~p~~~~~lg~~~p~gVLL~GPPGTGKT~LArAIA~el~~pfi~is-~sef~ 402 (597)
+...+.+.+||+-...-.++++..++... .+....+-+||+||||||||++++.+|++++..+..-. ...+.
T Consensus 11 ~ky~P~~~~eLavhkkKv~eV~~wl~~~~-------~~~~~~~iLlLtGP~G~GKtttv~~La~elg~~v~Ew~np~~~~ 83 (519)
T PF03215_consen 11 EKYAPKTLDELAVHKKKVEEVRSWLEEMF-------SGSSPKRILLLTGPSGCGKTTTVKVLAKELGFEVQEWINPVSFR 83 (519)
T ss_pred hhcCCCCHHHhhccHHHHHHHHHHHHHHh-------ccCCCcceEEEECCCCCCHHHHHHHHHHHhCCeeEEecCCCCcc
Confidence 34456778899998776666666655321 12233456788999999999999999999987666532 11110
Q ss_pred ------HHHhhcch------H---HHHHH-HHHHHh-----------cCCeEEEEcCcchhhhhcCCcccccchhHHHHH
Q 007575 403 ------ELYVGMGA------S---RVRDL-FARAKK-----------EAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQT 455 (597)
Q Consensus 403 ------~~~vG~~e------~---~vr~l-F~~A~~-----------~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~eqt 455 (597)
..+.+... . ...++ +..++. ..+.||+|||+-.+.... .......
T Consensus 84 ~~~~~~~d~~s~~~~~~~f~sq~~~F~~f~l~~s~y~~l~~~g~~~~~~~kvILVEDlPN~~~~~--------~~~f~~~ 155 (519)
T PF03215_consen 84 ESDNQEDDFESDFNKFDEFLSQSDKFSEFLLRASKYSSLSMSGSNSSSNKKVILVEDLPNVFHRD--------TSRFREA 155 (519)
T ss_pred ccccccccccccccccccccchhhhhccccccccccccccccCCCcCCCceEEEeeccccccchh--------HHHHHHH
Confidence 01111100 1 11111 122221 246799999998665321 1233333
Q ss_pred HHHHHHHhcCCCCCCcEEEEEec-------CCC--------CCCChhhhCCCCcceEEEecCCCHHHHHHHHHHHHhcC-
Q 007575 456 LNQLLTEMDGFDSNSAVIVLGAT-------NRS--------DVLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKK- 519 (597)
Q Consensus 456 LnqLL~emdg~~~~~~VIVIaaT-------Nrp--------d~LD~aLlRpgRFd~~I~v~~Pd~~eR~eILk~~l~~~- 519 (597)
|.+++.. ....++|+|.+- |.. ..+++.++...+.. +|.|.+-...-....|+..+...
T Consensus 156 L~~~l~~----~~~~PlV~iiSe~~~~~~~~~~~~~~~t~~~L~~~~il~~~~i~-~I~FNpIa~T~mkKaL~rI~~~E~ 230 (519)
T PF03215_consen 156 LRQYLRS----SRCLPLVFIISETESLSGDNSYRSNSFTAERLFPKEILNHPGIT-RIKFNPIAPTFMKKALKRILKKEA 230 (519)
T ss_pred HHHHHHc----CCCCCEEEEEecccccCCCCcccccchhhhhccCHHHHhCCCce-EEEecCCCHHHHHHHHHHHHHHHh
Confidence 3333331 111166776661 111 14577777644553 78888766655555555554432
Q ss_pred ----CCCCCCC-CC-HHHHHHhCCCCCHHHHHHHHHHHHHHHH
Q 007575 520 ----ELPLAKD-ID-LGDIASMTTGFTGADLANLVNEAALLAG 556 (597)
Q Consensus 520 ----~~~l~~d-vd-l~~LA~~t~G~SgaDL~~Lv~eAal~A~ 556 (597)
+....++ .. ++.|+..+. +||+..++...+.|.
T Consensus 231 ~~~~~~~~~p~~~~~l~~I~~~s~----GDIRsAIn~LQf~~~ 269 (519)
T PF03215_consen 231 RSSSGKNKVPDKQSVLDSIAESSN----GDIRSAINNLQFWCL 269 (519)
T ss_pred hhhcCCccCCChHHHHHHHHHhcC----chHHHHHHHHHHHhc
Confidence 1111121 22 667776654 499999998888876
No 233
>PRK06835 DNA replication protein DnaC; Validated
Probab=98.59 E-value=1.9e-07 Score=99.23 Aligned_cols=69 Identities=23% Similarity=0.427 Sum_probs=49.9
Q ss_pred CceEEeCCCCChHHHHHHHHHHhc---CCCeeeechhhhHHHHhhc---chHHHHHHHHHHHhcCCeEEEEcCcchh
Q 007575 366 RGVLLVGLPGTGKTLLAKAVAGEA---EVPFISCSASEFVELYVGM---GASRVRDLFARAKKEAPSIIFIDEIDAV 436 (597)
Q Consensus 366 ~gVLL~GPPGTGKT~LArAIA~el---~~pfi~is~sef~~~~vG~---~e~~vr~lF~~A~~~aP~ILfIDEIDaL 436 (597)
.+++|+||+|||||+||.|+|.++ +..++.++..+++..+... ........++... ...+|+|||+...
T Consensus 184 ~~Lll~G~~GtGKThLa~aIa~~l~~~g~~V~y~t~~~l~~~l~~~~~~~~~~~~~~~~~l~--~~DLLIIDDlG~e 258 (329)
T PRK06835 184 ENLLFYGNTGTGKTFLSNCIAKELLDRGKSVIYRTADELIEILREIRFNNDKELEEVYDLLI--NCDLLIIDDLGTE 258 (329)
T ss_pred CcEEEECCCCCcHHHHHHHHHHHHHHCCCeEEEEEHHHHHHHHHHHHhccchhHHHHHHHhc--cCCEEEEeccCCC
Confidence 689999999999999999999986 7888899998887755321 1111122233333 3459999999765
No 234
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=98.56 E-value=2.1e-07 Score=95.59 Aligned_cols=73 Identities=23% Similarity=0.376 Sum_probs=51.0
Q ss_pred CCCceEEeCCCCChHHHHHHHHHHhc---CCCeeeechhhhHHHHhhcch-HHHHHHHHHHHhcCCeEEEEcCcchhh
Q 007575 364 PPRGVLLVGLPGTGKTLLAKAVAGEA---EVPFISCSASEFVELYVGMGA-SRVRDLFARAKKEAPSIIFIDEIDAVA 437 (597)
Q Consensus 364 ~p~gVLL~GPPGTGKT~LArAIA~el---~~pfi~is~sef~~~~vG~~e-~~vr~lF~~A~~~aP~ILfIDEIDaL~ 437 (597)
.+.+++|+||||||||+||-|++.++ |..++.++.++++...-..-. .....-+.... ....+|+|||+-...
T Consensus 104 ~~~nl~l~G~~G~GKThLa~Ai~~~l~~~g~sv~f~~~~el~~~Lk~~~~~~~~~~~l~~~l-~~~dlLIiDDlG~~~ 180 (254)
T COG1484 104 RGENLVLLGPPGVGKTHLAIAIGNELLKAGISVLFITAPDLLSKLKAAFDEGRLEEKLLREL-KKVDLLIIDDIGYEP 180 (254)
T ss_pred cCCcEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEEHHHHHHHHHHHHhcCchHHHHHHHh-hcCCEEEEecccCcc
Confidence 45689999999999999999999876 789999999999876432211 11111122211 233599999997653
No 235
>KOG1051 consensus Chaperone HSP104 and related ATP-dependent Clp proteases [Posttranslational modification, protein turnover, chaperones]
Probab=98.55 E-value=4.4e-07 Score=106.08 Aligned_cols=126 Identities=33% Similarity=0.396 Sum_probs=93.6
Q ss_pred cccCChHHHHHHHHHHHHhcChhHHhhcCC-CCCCceEEeCCCCChHHHHHHHHHHhc---CCCeeeechhhhHHH----
Q 007575 333 DVAGVDEAKEELEEIVEFLRSPDKYIRLGA-RPPRGVLLVGLPGTGKTLLAKAVAGEA---EVPFISCSASEFVEL---- 404 (597)
Q Consensus 333 dV~G~de~k~~L~eiv~~l~~p~~~~~lg~-~~p~gVLL~GPPGTGKT~LArAIA~el---~~pfi~is~sef~~~---- 404 (597)
.|+|++++...+.+.|..-+.. ++. .+.-.+||.||.|+|||-||+|+|..+ .-.|+.+++++|.+.
T Consensus 563 ~V~gQ~eAv~aIa~AI~~sr~g-----l~~~~~~awflflGpdgvGKt~lAkaLA~~~Fgse~~~IriDmse~~evskli 637 (898)
T KOG1051|consen 563 RVIGQDEAVAAIAAAIRRSRAG-----LKDPNPDAWFLFLGPDGVGKTELAKALAEYVFGSEENFIRLDMSEFQEVSKLI 637 (898)
T ss_pred hccchHHHHHHHHHHHHhhhcc-----cCCCCCCeEEEEECCCchhHHHHHHHHHHHHcCCccceEEechhhhhhhhhcc
Confidence 5899999998888888754321 111 356679999999999999999999986 578999999987662
Q ss_pred -----HhhcchHHHHHHHHHHHhcCCeEEEEcCcchhhhhcCCcccccchhHHHHHHHHHHHHhcCCCC---------CC
Q 007575 405 -----YVGMGASRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDS---------NS 470 (597)
Q Consensus 405 -----~vG~~e~~vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~eqtLnqLL~emdg~~~---------~~ 470 (597)
|+|. .....+.+..+...-|||+|||||.-- ..++|.|+..||...- ..
T Consensus 638 gsp~gyvG~--e~gg~LteavrrrP~sVVLfdeIEkAh---------------~~v~n~llq~lD~GrltDs~Gr~Vd~k 700 (898)
T KOG1051|consen 638 GSPPGYVGK--EEGGQLTEAVKRRPYSVVLFEEIEKAH---------------PDVLNILLQLLDRGRLTDSHGREVDFK 700 (898)
T ss_pred CCCcccccc--hhHHHHHHHHhcCCceEEEEechhhcC---------------HHHHHHHHHHHhcCccccCCCcEeecc
Confidence 2222 344567777777777999999998743 2466777888775432 24
Q ss_pred cEEEEEecCC
Q 007575 471 AVIVLGATNR 480 (597)
Q Consensus 471 ~VIVIaaTNr 480 (597)
++|||+|+|.
T Consensus 701 N~I~IMTsn~ 710 (898)
T KOG1051|consen 701 NAIFIMTSNV 710 (898)
T ss_pred ceEEEEeccc
Confidence 6899999876
No 236
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=98.54 E-value=2.9e-07 Score=83.23 Aligned_cols=98 Identities=26% Similarity=0.391 Sum_probs=59.3
Q ss_pred CCceEEeCCCCChHHHHHHHHHHhc--------CCCeeeechhhhH------HHH---h-----h-cchHHHHHHHHHH-
Q 007575 365 PRGVLLVGLPGTGKTLLAKAVAGEA--------EVPFISCSASEFV------ELY---V-----G-MGASRVRDLFARA- 420 (597)
Q Consensus 365 p~gVLL~GPPGTGKT~LArAIA~el--------~~pfi~is~sef~------~~~---v-----G-~~e~~vr~lF~~A- 420 (597)
.+.++++||||+|||++++.++.++ +.+++.++++... ... . . .....+.+.+...
T Consensus 4 ~~~~~i~G~~G~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~~~~~l 83 (131)
T PF13401_consen 4 QRILVISGPPGSGKTTLIKRLARQLNAEAEIKNHPDVIYVNCPSSRTPRDFAQEILEALGLPLKSRQTSDELRSLLIDAL 83 (131)
T ss_dssp ---EEEEE-TTSSHHHHHHHHHHHHHHHHHHCCCEEEEEEEHHHHSSHHHHHHHHHHHHT-SSSSTS-HHHHHHHHHHHH
T ss_pred CcccEEEcCCCCCHHHHHHHHHHHhHHhhhccCCCcEEEEEeCCCCCHHHHHHHHHHHhCccccccCCHHHHHHHHHHHH
Confidence 4568999999999999999999987 6788887766432 111 0 1 1223333333333
Q ss_pred HhcCCeEEEEcCcchhhhhcCCcccccchhHHHHHHHHHHHHhcCCCCCCcEEEEEec
Q 007575 421 KKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGAT 478 (597)
Q Consensus 421 ~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~eqtLnqLL~emdg~~~~~~VIVIaaT 478 (597)
......+|+|||+|.+. + ...++.|...++ ..+-.++++++.
T Consensus 84 ~~~~~~~lviDe~~~l~-~-------------~~~l~~l~~l~~--~~~~~vvl~G~~ 125 (131)
T PF13401_consen 84 DRRRVVLLVIDEADHLF-S-------------DEFLEFLRSLLN--ESNIKVVLVGTP 125 (131)
T ss_dssp HHCTEEEEEEETTHHHH-T-------------HHHHHHHHHHTC--SCBEEEEEEESS
T ss_pred HhcCCeEEEEeChHhcC-C-------------HHHHHHHHHHHh--CCCCeEEEEECh
Confidence 34444599999999974 1 356677766666 333445555544
No 237
>PF13173 AAA_14: AAA domain
Probab=98.54 E-value=4.1e-07 Score=83.29 Aligned_cols=70 Identities=24% Similarity=0.297 Sum_probs=48.3
Q ss_pred CceEEeCCCCChHHHHHHHHHHhcC--CCeeeechhhhHHHHhhcchHHHHHHHHHHHhcCCeEEEEcCcchhh
Q 007575 366 RGVLLVGLPGTGKTLLAKAVAGEAE--VPFISCSASEFVELYVGMGASRVRDLFARAKKEAPSIIFIDEIDAVA 437 (597)
Q Consensus 366 ~gVLL~GPPGTGKT~LArAIA~el~--~pfi~is~sef~~~~vG~~e~~vr~lF~~A~~~aP~ILfIDEIDaL~ 437 (597)
+.++|+||.|+|||++++.++.++. ..++++++.+.......... +.+.+.+.....+.+||||||+.+.
T Consensus 3 ~~~~l~G~R~vGKTtll~~~~~~~~~~~~~~yi~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~i~iDEiq~~~ 74 (128)
T PF13173_consen 3 KIIILTGPRGVGKTTLLKQLAKDLLPPENILYINFDDPRDRRLADPD--LLEYFLELIKPGKKYIFIDEIQYLP 74 (128)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhcccccceeeccCCHHHHHHhhhh--hHHHHHHhhccCCcEEEEehhhhhc
Confidence 4589999999999999999998876 77788887765442211111 2233333322356799999998873
No 238
>PRK09183 transposase/IS protein; Provisional
Probab=98.53 E-value=1.5e-07 Score=96.79 Aligned_cols=72 Identities=28% Similarity=0.390 Sum_probs=50.9
Q ss_pred CCceEEeCCCCChHHHHHHHHHHhc---CCCeeeechhhhHHHHhhc-chHHHHHHHHHHHhcCCeEEEEcCcchhh
Q 007575 365 PRGVLLVGLPGTGKTLLAKAVAGEA---EVPFISCSASEFVELYVGM-GASRVRDLFARAKKEAPSIIFIDEIDAVA 437 (597)
Q Consensus 365 p~gVLL~GPPGTGKT~LArAIA~el---~~pfi~is~sef~~~~vG~-~e~~vr~lF~~A~~~aP~ILfIDEIDaL~ 437 (597)
..+++|+||||||||+||.+++.++ |..+..+++.++...+... ....+...+... ...+++++|||++.+.
T Consensus 102 ~~~v~l~Gp~GtGKThLa~al~~~a~~~G~~v~~~~~~~l~~~l~~a~~~~~~~~~~~~~-~~~~dlLiiDdlg~~~ 177 (259)
T PRK09183 102 NENIVLLGPSGVGKTHLAIALGYEAVRAGIKVRFTTAADLLLQLSTAQRQGRYKTTLQRG-VMAPRLLIIDEIGYLP 177 (259)
T ss_pred CCeEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEeHHHHHHHHHHHHHCCcHHHHHHHH-hcCCCEEEEcccccCC
Confidence 4579999999999999999997664 7777788888776543221 112344455543 2456799999997753
No 239
>KOG2035 consensus Replication factor C, subunit RFC3 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=98.53 E-value=9.4e-07 Score=90.61 Aligned_cols=173 Identities=18% Similarity=0.275 Sum_probs=121.5
Q ss_pred CcccccccCChHHHHHHHHHHHHhcChhHHhhcCCCCCCceEEeCCCCChHHHHHHHHHHhc-C--CCe-----------
Q 007575 328 TITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEA-E--VPF----------- 393 (597)
Q Consensus 328 ~vtf~dV~G~de~k~~L~eiv~~l~~p~~~~~lg~~~p~gVLL~GPPGTGKT~LArAIA~el-~--~pf----------- 393 (597)
+-+++.+.+.++....|+.....-. -.++|+|||+|+||-+.+.++.+++ | ++=
T Consensus 9 pksl~~l~~~~e~~~~Lksl~~~~d------------~PHll~yGPSGaGKKTrimclL~elYG~gveklki~~~t~~tp 76 (351)
T KOG2035|consen 9 PKSLDELIYHEELANLLKSLSSTGD------------FPHLLVYGPSGAGKKTRIMCLLRELYGVGVEKLKIETRTFTTP 76 (351)
T ss_pred cchhhhcccHHHHHHHHHHhcccCC------------CCeEEEECCCCCCchhhHHHHHHHHhCCCchheeeeeEEEecC
Confidence 3457778888888888777664111 1269999999999999999998875 2 211
Q ss_pred ---------------eeechhhhHHHHhhc-chHHHHHHHHHHHhcCC---------eEEEEcCcchhhhhcCCcccccc
Q 007575 394 ---------------ISCSASEFVELYVGM-GASRVRDLFARAKKEAP---------SIIFIDEIDAVAKSRDGRFRIVS 448 (597)
Q Consensus 394 ---------------i~is~sef~~~~vG~-~e~~vr~lF~~A~~~aP---------~ILfIDEIDaL~~~r~~~~~~~~ 448 (597)
+.++.++ +|. ..-.+.+++++.....| .+|+|.|.|.|.+..+
T Consensus 77 S~kklEistvsS~yHlEitPSD-----aG~~DRvViQellKevAQt~qie~~~qr~fKvvvi~ead~LT~dAQ------- 144 (351)
T KOG2035|consen 77 SKKKLEISTVSSNYHLEITPSD-----AGNYDRVVIQELLKEVAQTQQIETQGQRPFKVVVINEADELTRDAQ------- 144 (351)
T ss_pred CCceEEEEEecccceEEeChhh-----cCcccHHHHHHHHHHHHhhcchhhccccceEEEEEechHhhhHHHH-------
Confidence 1222222 122 22335666666655443 4999999999976543
Q ss_pred hhHHHHHHHHHHHHhcCCCCCCcEEEEEecCCCCCCChhhhCCCCcceEEEecCCCHHHHHHHHHHHHhcCCCCCCCCCC
Q 007575 449 NDEREQTLNQLLTEMDGFDSNSAVIVLGATNRSDVLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKDID 528 (597)
Q Consensus 449 ~~e~eqtLnqLL~emdg~~~~~~VIVIaaTNrpd~LD~aLlRpgRFd~~I~v~~Pd~~eR~eILk~~l~~~~~~l~~dvd 528 (597)
..|-..|+.+.++ +-+|..+|....+-+++++ |. ..|.++.|+.++...++...+.+.++.+..++
T Consensus 145 --------~aLRRTMEkYs~~--~RlIl~cns~SriIepIrS--RC-l~iRvpaps~eeI~~vl~~v~~kE~l~lp~~~- 210 (351)
T KOG2035|consen 145 --------HALRRTMEKYSSN--CRLILVCNSTSRIIEPIRS--RC-LFIRVPAPSDEEITSVLSKVLKKEGLQLPKEL- 210 (351)
T ss_pred --------HHHHHHHHHHhcC--ceEEEEecCcccchhHHhh--he-eEEeCCCCCHHHHHHHHHHHHHHhcccCcHHH-
Confidence 3455566655554 4566678888888899988 65 36899999999999999999999888877553
Q ss_pred HHHHHHhCCC
Q 007575 529 LGDIASMTTG 538 (597)
Q Consensus 529 l~~LA~~t~G 538 (597)
+..||+.+.|
T Consensus 211 l~rIa~kS~~ 220 (351)
T KOG2035|consen 211 LKRIAEKSNR 220 (351)
T ss_pred HHHHHHHhcc
Confidence 7788887765
No 240
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=98.50 E-value=4.2e-07 Score=96.55 Aligned_cols=132 Identities=24% Similarity=0.384 Sum_probs=91.5
Q ss_pred CCCCceEEeCCCCChHHHHHHHHHHhcCC--------Ceeee-ch--------hhhHHHHh-------h-----cchHHH
Q 007575 363 RPPRGVLLVGLPGTGKTLLAKAVAGEAEV--------PFISC-SA--------SEFVELYV-------G-----MGASRV 413 (597)
Q Consensus 363 ~~p~gVLL~GPPGTGKT~LArAIA~el~~--------pfi~i-s~--------sef~~~~v-------G-----~~e~~v 413 (597)
+.|..+||+||+|+|||++|+++|+.+.+ |.-.| +| ++|..... | -+.+.+
T Consensus 19 r~~hA~Lf~G~~G~GK~~la~~~a~~llC~~~~~~~~~Cg~C~~C~~~~~~~HpD~~~~~p~~~~~~~g~~~~~I~id~i 98 (325)
T PRK08699 19 RRPNAWLFAGKKGIGKTAFARFAAQALLCETPAPGHKPCGECMSCHLFGQGSHPDFYEITPLSDEPENGRKLLQIKIDAV 98 (325)
T ss_pred CcceEEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCcCHHHHHHhcCCCCCEEEEecccccccccccCCCcCHHHH
Confidence 67889999999999999999999997643 11111 01 11111100 1 235667
Q ss_pred HHHHHHHHh----cCCeEEEEcCcchhhhhcCCcccccchhHHHHHHHHHHHHhcCCCCCCcEEEEEecCCCCCCChhhh
Q 007575 414 RDLFARAKK----EAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATNRSDVLDPALR 489 (597)
Q Consensus 414 r~lF~~A~~----~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~eqtLnqLL~emdg~~~~~~VIVIaaTNrpd~LD~aLl 489 (597)
|++.+.+.. ....|++||++|.+... ..|.|+..|+... .++.+|.+|+.++.+.+.+.
T Consensus 99 R~l~~~~~~~p~~~~~kV~iiEp~~~Ld~~---------------a~naLLk~LEep~--~~~~~Ilvth~~~~ll~ti~ 161 (325)
T PRK08699 99 REIIDNVYLTSVRGGLRVILIHPAESMNLQ---------------AANSLLKVLEEPP--PQVVFLLVSHAADKVLPTIK 161 (325)
T ss_pred HHHHHHHhhCcccCCceEEEEechhhCCHH---------------HHHHHHHHHHhCc--CCCEEEEEeCChHhChHHHH
Confidence 888777754 23459999999988533 4477888887654 34666778888889999998
Q ss_pred CCCCcceEEEecCCCHHHHHHHHHH
Q 007575 490 RPGRFDRVVMVETPDKIGREAILKV 514 (597)
Q Consensus 490 RpgRFd~~I~v~~Pd~~eR~eILk~ 514 (597)
+ |+ .++.|++|+.++..+.|..
T Consensus 162 S--Rc-~~~~~~~~~~~~~~~~L~~ 183 (325)
T PRK08699 162 S--RC-RKMVLPAPSHEEALAYLRE 183 (325)
T ss_pred H--Hh-hhhcCCCCCHHHHHHHHHh
Confidence 8 66 4788999998887777754
No 241
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=98.49 E-value=1e-07 Score=92.78 Aligned_cols=70 Identities=29% Similarity=0.456 Sum_probs=49.1
Q ss_pred CCCceEEeCCCCChHHHHHHHHHHhc---CCCeeeechhhhHHHHhhc-chHHHHHHHHHHHhcCCeEEEEcCcch
Q 007575 364 PPRGVLLVGLPGTGKTLLAKAVAGEA---EVPFISCSASEFVELYVGM-GASRVRDLFARAKKEAPSIIFIDEIDA 435 (597)
Q Consensus 364 ~p~gVLL~GPPGTGKT~LArAIA~el---~~pfi~is~sef~~~~vG~-~e~~vr~lF~~A~~~aP~ILfIDEIDa 435 (597)
...+++|+||||||||+||.+++.++ |.++..++.++++...... ......++++.... +.+|+|||+..
T Consensus 46 ~~~~l~l~G~~G~GKThLa~ai~~~~~~~g~~v~f~~~~~L~~~l~~~~~~~~~~~~~~~l~~--~dlLilDDlG~ 119 (178)
T PF01695_consen 46 NGENLILYGPPGTGKTHLAVAIANEAIRKGYSVLFITASDLLDELKQSRSDGSYEELLKRLKR--VDLLILDDLGY 119 (178)
T ss_dssp C--EEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEHHHHHHHHHCCHCCTTHCHHHHHHHT--SSCEEEETCTS
T ss_pred cCeEEEEEhhHhHHHHHHHHHHHHHhccCCcceeEeecCceeccccccccccchhhhcCcccc--ccEecccccce
Confidence 35689999999999999999999875 8899999999998775322 11223445554443 35999999954
No 242
>COG3284 AcoR Transcriptional activator of acetoin/glycerol metabolism [Secondary metabolites biosynthesis, transport, and catabolism / Transcription]
Probab=98.46 E-value=1.2e-07 Score=106.24 Aligned_cols=203 Identities=23% Similarity=0.320 Sum_probs=121.4
Q ss_pred cCChHHHHHHHHHHHHhcChhHHhhcCCCCCCceEEeCCCCChHHHHHHHHHHh--cCCCeeeechhhhHHH-----Hhh
Q 007575 335 AGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGE--AEVPFISCSASEFVEL-----YVG 407 (597)
Q Consensus 335 ~G~de~k~~L~eiv~~l~~p~~~~~lg~~~p~gVLL~GPPGTGKT~LArAIA~e--l~~pfi~is~sef~~~-----~vG 407 (597)
++.+...+.+..-++.+... .-.+|+.|.|||||-.+|+++-.. ..-||+.++|..+.+. ++|
T Consensus 316 ~~~d~s~a~l~rk~~rv~~~----------~~pvll~GEtGtGKe~laraiH~~s~~~gpfvAvNCaAip~~liesELFG 385 (606)
T COG3284 316 PLLDPSRATLLRKAERVAAT----------DLPVLLQGETGTGKEVLARAIHQNSEAAGPFVAVNCAAIPEALIESELFG 385 (606)
T ss_pred cccCHHHHHHHHHHHHHhhc----------CCCeEecCCcchhHHHHHHHHHhcccccCCeEEEEeccchHHhhhHHHhc
Confidence 45555555555544433322 225999999999999999999664 4679999999865443 222
Q ss_pred c--------chHHHHHHHHHHHhcCCeEEEEcCcchhhhhcCCcccccchhHHHHHHHHHHHHhc--------CCCCCCc
Q 007575 408 M--------GASRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMD--------GFDSNSA 471 (597)
Q Consensus 408 ~--------~e~~vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~eqtLnqLL~emd--------g~~~~~~ 471 (597)
- ..+--+..+++|..+ .+|+|||..+.-.- ...||..+. +-.-+-.
T Consensus 386 y~~GafTga~~kG~~g~~~~A~gG---tlFldeIgd~p~~~---------------Qs~LLrVl~e~~v~p~g~~~~~vd 447 (606)
T COG3284 386 YVAGAFTGARRKGYKGKLEQADGG---TLFLDEIGDMPLAL---------------QSRLLRVLQEGVVTPLGGTRIKVD 447 (606)
T ss_pred cCccccccchhccccccceecCCC---ccHHHHhhhchHHH---------------HHHHHHHHhhCceeccCCcceeEE
Confidence 2 112233444445444 89999998875332 234444443 2222346
Q ss_pred EEEEEecCCCCCCChhhhCCCCcceE-------EEecCCCHHHHHH---HHHHHHhcCC---CCCCCCCCHHHHHHhCCC
Q 007575 472 VIVLGATNRSDVLDPALRRPGRFDRV-------VMVETPDKIGREA---ILKVHVSKKE---LPLAKDIDLGDIASMTTG 538 (597)
Q Consensus 472 VIVIaaTNrpd~LD~aLlRpgRFd~~-------I~v~~Pd~~eR~e---ILk~~l~~~~---~~l~~dvdl~~LA~~t~G 538 (597)
|-||+||+++ -..|.+.|||-+. ..+.+|...+|.+ .|..++.+.+ ..++++. +..|...-+.
T Consensus 448 irvi~ath~d---l~~lv~~g~fredLyyrL~~~~i~lP~lr~R~d~~~~l~~~~~~~~~~~~~l~~~~-~~~l~~~~WP 523 (606)
T COG3284 448 IRVIAATHRD---LAQLVEQGRFREDLYYRLNAFVITLPPLRERSDRIPLLDRILKRENDWRLQLDDDA-LARLLAYRWP 523 (606)
T ss_pred EEEEeccCcC---HHHHHHcCCchHHHHHHhcCeeeccCchhcccccHHHHHHHHHHccCCCccCCHHH-HHHHHhCCCC
Confidence 8899999986 3567777888543 3455687777753 3444443322 2333332 3333334444
Q ss_pred CCHHHHHHHHHHHHHHHHhcCCCcccHHHHHHHH
Q 007575 539 FTGADLANLVNEAALLAGRLNKVVVEKIDFIHAV 572 (597)
Q Consensus 539 ~SgaDL~~Lv~eAal~A~r~~~~~It~~d~~~Al 572 (597)
-+-++|.+++..++..+ +...|...|+...+
T Consensus 524 GNirel~~v~~~~~~l~---~~g~~~~~dlp~~l 554 (606)
T COG3284 524 GNIRELDNVIERLAALS---DGGRIRVSDLPPEL 554 (606)
T ss_pred CcHHHHHHHHHHHHHcC---CCCeeEcccCCHHH
Confidence 46789999999988776 44445555544443
No 243
>PRK06921 hypothetical protein; Provisional
Probab=98.46 E-value=5.5e-07 Score=93.13 Aligned_cols=69 Identities=26% Similarity=0.330 Sum_probs=47.3
Q ss_pred CCCceEEeCCCCChHHHHHHHHHHhc----CCCeeeechhhhHHHHhhcchHHHHHHHHHHHhcCCeEEEEcCcch
Q 007575 364 PPRGVLLVGLPGTGKTLLAKAVAGEA----EVPFISCSASEFVELYVGMGASRVRDLFARAKKEAPSIIFIDEIDA 435 (597)
Q Consensus 364 ~p~gVLL~GPPGTGKT~LArAIA~el----~~pfi~is~sef~~~~vG~~e~~vr~lF~~A~~~aP~ILfIDEIDa 435 (597)
...+++|+||||||||+|+.|+|.++ +..+++++..+++...... .....+.++.. ....+|+|||++.
T Consensus 116 ~~~~l~l~G~~G~GKThLa~aia~~l~~~~g~~v~y~~~~~l~~~l~~~-~~~~~~~~~~~--~~~dlLiIDDl~~ 188 (266)
T PRK06921 116 RKNSIALLGQPGSGKTHLLTAAANELMRKKGVPVLYFPFVEGFGDLKDD-FDLLEAKLNRM--KKVEVLFIDDLFK 188 (266)
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHHHhhhcCceEEEEEHHHHHHHHHHH-HHHHHHHHHHh--cCCCEEEEecccc
Confidence 35689999999999999999999975 6777888877765543221 11122223332 2346999999944
No 244
>COG3283 TyrR Transcriptional regulator of aromatic amino acids metabolism [Transcription / Amino acid transport and metabolism]
Probab=98.42 E-value=2.8e-06 Score=89.70 Aligned_cols=197 Identities=23% Similarity=0.323 Sum_probs=122.1
Q ss_pred CCcccccccCChHHHHHHHHHHHHhcChhHHhhcCCCCCCceEEeCCCCChHHHHHHHHHHh---cCCCeeeechhhhHH
Q 007575 327 DTITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGE---AEVPFISCSASEFVE 403 (597)
Q Consensus 327 ~~vtf~dV~G~de~k~~L~eiv~~l~~p~~~~~lg~~~p~gVLL~GPPGTGKT~LArAIA~e---l~~pfi~is~sef~~ 403 (597)
+...|+.+++.....+.+.+-.. ++.-+ ...+||.|..||||-++||+.... ...||+.++|..+.+
T Consensus 199 ~~~~F~~~v~~S~~mk~~v~qA~------k~Aml----DAPLLI~GeTGTGKdLlAkaCH~~S~R~~~pFlalNCA~lPe 268 (511)
T COG3283 199 DVSGFEQIVAVSPKMKHVVEQAQ------KLAML----DAPLLITGETGTGKDLLAKACHLASPRHSKPFLALNCASLPE 268 (511)
T ss_pred cccchHHHhhccHHHHHHHHHHH------Hhhcc----CCCeEEecCCCchHHHHHHHHhhcCcccCCCeeEeecCCCch
Confidence 34567777777665444443322 22211 224999999999999999998654 378999999986654
Q ss_pred H-----Hhhc--chHHHHHHHHHHHhcCCeEEEEcCcchhhhhcCCcccccchhHHHHHHHHHHHHhc-CC--------C
Q 007575 404 L-----YVGM--GASRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMD-GF--------D 467 (597)
Q Consensus 404 ~-----~vG~--~e~~vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~eqtLnqLL~emd-g~--------~ 467 (597)
. ..|. +.+.-..+|+.|..+ .+|+|||..+.+.-+ ..||..+. |. +
T Consensus 269 ~~aEsElFG~apg~~gk~GffE~AngG---TVlLDeIgEmSp~lQ---------------aKLLRFL~DGtFRRVGee~E 330 (511)
T COG3283 269 DAAESELFGHAPGDEGKKGFFEQANGG---TVLLDEIGEMSPRLQ---------------AKLLRFLNDGTFRRVGEDHE 330 (511)
T ss_pred hHhHHHHhcCCCCCCCccchhhhccCC---eEEeehhhhcCHHHH---------------HHHHHHhcCCceeecCCcce
Confidence 3 2222 224445788888776 899999987754432 34455443 21 1
Q ss_pred CCCcEEEEEecCCC--CCCC-----hhhhCCCCcceEEEecCCCHHHHHH--------HHHHHHhcCCCCCCCCCC---H
Q 007575 468 SNSAVIVLGATNRS--DVLD-----PALRRPGRFDRVVMVETPDKIGREA--------ILKVHVSKKELPLAKDID---L 529 (597)
Q Consensus 468 ~~~~VIVIaaTNrp--d~LD-----~aLlRpgRFd~~I~v~~Pd~~eR~e--------ILk~~l~~~~~~l~~dvd---l 529 (597)
-...|-||+||..+ +..+ ..|.- |.. ++.+..|...+|.+ ++..+..+.+++.. ..+ +
T Consensus 331 v~vdVRVIcatq~nL~~lv~~g~fReDLfy--RLN-VLtl~~PpLRer~~di~pL~e~Fv~q~s~elg~p~p-kl~~~~~ 406 (511)
T COG3283 331 VHVDVRVICATQVNLVELVQKGKFREDLFY--RLN-VLTLNLPPLRERPQDIMPLAELFVQQFSDELGVPRP-KLAADLL 406 (511)
T ss_pred EEEEEEEEecccccHHHHHhcCchHHHHHH--Hhh-eeeecCCccccCcccchHHHHHHHHHHHHHhCCCCC-ccCHHHH
Confidence 12368999999875 1122 22222 333 67778888777742 34444554444432 222 4
Q ss_pred HHHHHhCCCCCHHHHHHHHHHHHHHH
Q 007575 530 GDIASMTTGFTGADLANLVNEAALLA 555 (597)
Q Consensus 530 ~~LA~~t~G~SgaDL~~Lv~eAal~A 555 (597)
..|.++-+.-+.++|.|.+-+|+.+.
T Consensus 407 ~~L~~y~WpGNVRqL~N~iyRA~s~~ 432 (511)
T COG3283 407 TVLTRYAWPGNVRQLKNAIYRALTLL 432 (511)
T ss_pred HHHHHcCCCccHHHHHHHHHHHHHHh
Confidence 55555555557799999999998876
No 245
>KOG0478 consensus DNA replication licensing factor, MCM4 component [Replication, recombination and repair]
Probab=98.39 E-value=2.8e-06 Score=95.58 Aligned_cols=203 Identities=25% Similarity=0.262 Sum_probs=107.7
Q ss_pred CCCceEEeCCCCChHHHHHHHHHHhcCCCeeee-chhhhHHHHhhcch-HHHHHHHHHHHh---cCCeEEEEcCcchhhh
Q 007575 364 PPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISC-SASEFVELYVGMGA-SRVRDLFARAKK---EAPSIIFIDEIDAVAK 438 (597)
Q Consensus 364 ~p~gVLL~GPPGTGKT~LArAIA~el~~pfi~i-s~sef~~~~vG~~e-~~vr~lF~~A~~---~aP~ILfIDEIDaL~~ 438 (597)
.--+|||+|.||||||.|.+.+++-+..-.+.- .++.-+..-.+.+. ...+++.-+.-. ..-.|..|||+|.+..
T Consensus 461 ~~INILL~GDPGtsKSqlLqyv~~l~pRg~yTSGkGsSavGLTayVtrd~dtkqlVLesGALVLSD~GiCCIDEFDKM~d 540 (804)
T KOG0478|consen 461 GDINILLVGDPGTSKSQLLQYCHRLLPRGVYTSGKGSSAVGLTAYVTKDPDTRQLVLESGALVLSDNGICCIDEFDKMSD 540 (804)
T ss_pred ccceEEEecCCCcCHHHHHHHHHHhCCcceeecCCccchhcceeeEEecCccceeeeecCcEEEcCCceEEchhhhhhhH
Confidence 345799999999999999999998765433321 11111110000000 011122111111 1123889999999843
Q ss_pred hcCCcccccchhHHHHHHHHHHHHhcCC--CCCCcEEEEEecCCCC-------------CCChhhhCCCCcceEE-EecC
Q 007575 439 SRDGRFRIVSNDEREQTLNQLLTEMDGF--DSNSAVIVLGATNRSD-------------VLDPALRRPGRFDRVV-MVET 502 (597)
Q Consensus 439 ~r~~~~~~~~~~e~eqtLnqLL~emdg~--~~~~~VIVIaaTNrpd-------------~LD~aLlRpgRFd~~I-~v~~ 502 (597)
+.. ...++..+|.--.+- ..|. .-+...-|+|+.|... .|+|.|++ |||.++ .++.
T Consensus 541 Str----SvLhEvMEQQTvSIA--KAGII~sLNAR~SVLAaANP~~skynp~k~i~eNI~LpptLLS--RFDLIylllD~ 612 (804)
T KOG0478|consen 541 STR----SVLHEVMEQQTLSIA--KAGIIASLNARCSVLAAANPIRSKYNPNKSIIENINLPPTLLS--RFDLIFLLLDK 612 (804)
T ss_pred HHH----HHHHHHHHHhhhhHh--hcceeeeccccceeeeeeccccccCCCCCchhhccCCChhhhh--hhcEEEEEecC
Confidence 321 123333332211111 1111 1244566899998531 46899999 999765 4567
Q ss_pred CCHH-HHH---HHHHHHHh--------------------cCCCCCCCCC---CHHHH-HHh----C----CC---CCHHH
Q 007575 503 PDKI-GRE---AILKVHVS--------------------KKELPLAKDI---DLGDI-ASM----T----TG---FTGAD 543 (597)
Q Consensus 503 Pd~~-eR~---eILk~~l~--------------------~~~~~l~~dv---dl~~L-A~~----t----~G---~SgaD 543 (597)
||.. +|. .|...|.. ...-+..+.+ ....+ +.. . .| -++++
T Consensus 613 ~DE~~Dr~La~HivsLy~e~~~~~~~~~~d~~~lr~yi~yArk~i~p~l~~ea~~~l~~ayvd~rk~~~~~~~itat~rQ 692 (804)
T KOG0478|consen 613 PDERSDRRLADHIVALYPETGEKQGSEAIDMNLLRDYIRYARKNIHPALSPEASQALIQAYVDMRKIGEGAGQITATPRQ 692 (804)
T ss_pred cchhHHHHHHHHHHHhcccccccchhHHHhHHHHHHHHHHHhccCCccccHHHHHHHHHHhhhhhhhcccccccchhHHH
Confidence 7765 221 12222221 1000111111 11111 100 0 11 35688
Q ss_pred HHHHHHHHHHHHHhcCCCcccHHHHHHHHHH
Q 007575 544 LANLVNEAALLAGRLNKVVVEKIDFIHAVER 574 (597)
Q Consensus 544 L~~Lv~eAal~A~r~~~~~It~~d~~~Al~~ 574 (597)
++.|++.+..+|..+..+.+...|+++|+.-
T Consensus 693 lesLiRlsEahak~r~s~~ve~~dV~eA~~l 723 (804)
T KOG0478|consen 693 LESLIRLSEAHAKMRLSNRVEEIDVEEAVRL 723 (804)
T ss_pred HHHHHHHHHHHHHhhcccccchhhHHHHHHH
Confidence 9999999999999899999999999999654
No 246
>KOG1970 consensus Checkpoint RAD17-RFC complex, RAD17/RAD24 component [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=98.38 E-value=1.5e-05 Score=88.35 Aligned_cols=174 Identities=15% Similarity=0.170 Sum_probs=95.2
Q ss_pred CceEEeCCCCChHHHHHHHHHHhcCCCeeeechh-------------hhHHHHhhcchHHHHHHHHHHHh----------
Q 007575 366 RGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSAS-------------EFVELYVGMGASRVRDLFARAKK---------- 422 (597)
Q Consensus 366 ~gVLL~GPPGTGKT~LArAIA~el~~pfi~is~s-------------ef~~~~vG~~e~~vr~lF~~A~~---------- 422 (597)
+-+||+||+|||||+.++.++.++|..++.-+-+ .+....+..--.........+.+
T Consensus 111 ~iLLltGPsGcGKSTtvkvLskelg~~~~Ew~Npi~~~~~~~~h~~t~~~~~~~~s~L~~fesFler~~kyg~l~~~g~~ 190 (634)
T KOG1970|consen 111 RILLLTGPSGCGKSTTVKVLSKELGYQLIEWSNPINLKEPENLHNETSFLMFPYQSQLAVFESFLLRATKYGSLQMSGDD 190 (634)
T ss_pred eEEEEeCCCCCCchhHHHHHHHhhCceeeeecCCccccccccccccchhcccchhhHHHHHHHHHHHHHhhchhhhcccc
Confidence 3588999999999999999999998877664311 11111111111111222222311
Q ss_pred --cCCeEEEEcCcchhhhhcCCcccccchhHHHHHHHHHHHHhcCCCCCCcEEEEEecCCCCCCChhhhC------CCCc
Q 007575 423 --EAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATNRSDVLDPALRR------PGRF 494 (597)
Q Consensus 423 --~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~eqtLnqLL~emdg~~~~~~VIVIaaTNrpd~LD~aLlR------pgRF 494 (597)
..+.+|+|||+-...... ....+...|.+.-......-|++|.-++.++..++..+. ..|.
T Consensus 191 ~~~~~~liLveDLPn~~~~d-----------~~~~f~evL~~y~s~g~~PlIf~iTd~~~~g~nnq~rlf~~d~q~~~ri 259 (634)
T KOG1970|consen 191 LRTDKKLILVEDLPNQFYRD-----------DSETFREVLRLYVSIGRCPLIFIITDSLSNGNNNQDRLFPKDIQEEPRI 259 (634)
T ss_pred cccCceEEEeeccchhhhhh-----------hHHHHHHHHHHHHhcCCCcEEEEEeccccCCCcchhhhchhhhhhccCc
Confidence 346699999997765321 122333333333222223323344333444444333322 2255
Q ss_pred ceEEEecCCCHHHHHHHHHHHHhcCCCCCCC-----CCCHHHHHHhCCCCCHHHHHHHHHHHHHHH
Q 007575 495 DRVVMVETPDKIGREAILKVHVSKKELPLAK-----DIDLGDIASMTTGFTGADLANLVNEAALLA 555 (597)
Q Consensus 495 d~~I~v~~Pd~~eR~eILk~~l~~~~~~l~~-----dvdl~~LA~~t~G~SgaDL~~Lv~eAal~A 555 (597)
+ +|.|.+-...--++.|+..+.....++.+ ...++.++.. +++||+..++...+.+
T Consensus 260 ~-~IsFNPIa~T~MKK~L~ric~~e~~~~s~~k~~~~~~v~~i~~~----s~GDIRsAInsLQlss 320 (634)
T KOG1970|consen 260 S-NISFNPIAPTIMKKFLKRICRIEANKKSGIKVPDTAEVELICQG----SGGDIRSAINSLQLSS 320 (634)
T ss_pred c-eEeecCCcHHHHHHHHHHHHHHhcccccCCcCchhHHHHHHHHh----cCccHHHHHhHhhhhc
Confidence 4 67777766666677777776655444442 2234444433 4459999999888876
No 247
>PF05729 NACHT: NACHT domain
Probab=98.33 E-value=5.4e-06 Score=77.20 Aligned_cols=141 Identities=16% Similarity=0.253 Sum_probs=73.9
Q ss_pred ceEEeCCCCChHHHHHHHHHHhcC--------CC-eeeechhhhHHH------------HhhcchHHHHH-HHHHHHhcC
Q 007575 367 GVLLVGLPGTGKTLLAKAVAGEAE--------VP-FISCSASEFVEL------------YVGMGASRVRD-LFARAKKEA 424 (597)
Q Consensus 367 gVLL~GPPGTGKT~LArAIA~el~--------~p-fi~is~sef~~~------------~vG~~e~~vr~-lF~~A~~~a 424 (597)
-++|+|+||+|||++++.++..+. .+ ++.+.+.++... ........... +...+....
T Consensus 2 ~l~I~G~~G~GKStll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~ 81 (166)
T PF05729_consen 2 VLWISGEPGSGKSTLLRKLAQQLAEEEPPPSKFPYPFFFSLRDISDSNNSRSLADLLFDQLPESIAPIEELLQELLEKNK 81 (166)
T ss_pred EEEEECCCCCChHHHHHHHHHHHHhcCcccccceEEEEEeehhhhhccccchHHHHHHHhhccchhhhHHHHHHHHHcCC
Confidence 478999999999999999987541 11 223333322111 11111112222 222334456
Q ss_pred CeEEEEcCcchhhhhcCCcccccchhHHHHHHHHHHHHhcC-CCCCCcEEEEEecCCCCCCChhhhCCCCcceEEEecCC
Q 007575 425 PSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDG-FDSNSAVIVLGATNRSDVLDPALRRPGRFDRVVMVETP 503 (597)
Q Consensus 425 P~ILfIDEIDaL~~~r~~~~~~~~~~e~eqtLnqLL~emdg-~~~~~~VIVIaaTNrpd~LD~aLlRpgRFd~~I~v~~P 503 (597)
+.+|+||.+|.+....+. .+.......+...+.. ...+..++|.+.+.....+...+.. . ..+.+...
T Consensus 82 ~~llilDglDE~~~~~~~-------~~~~~~~~~l~~l~~~~~~~~~~liit~r~~~~~~~~~~~~~---~-~~~~l~~~ 150 (166)
T PF05729_consen 82 RVLLILDGLDELEEQDQS-------QERQRLLDLLSQLLPQALPPGVKLIITSRPRAFPDLRRRLKQ---A-QILELEPF 150 (166)
T ss_pred ceEEEEechHhcccchhh-------hHHHHHHHHHHHHhhhccCCCCeEEEEEcCChHHHHHHhcCC---C-cEEEECCC
Confidence 779999999999754321 1112222222223332 2223333333322221122222222 1 57899999
Q ss_pred CHHHHHHHHHHHHhc
Q 007575 504 DKIGREAILKVHVSK 518 (597)
Q Consensus 504 d~~eR~eILk~~l~~ 518 (597)
+.++..++++.+++.
T Consensus 151 ~~~~~~~~~~~~f~~ 165 (166)
T PF05729_consen 151 SEEDIKQYLRKYFSN 165 (166)
T ss_pred CHHHHHHHHHHHhhc
Confidence 999999999988753
No 248
>KOG0482 consensus DNA replication licensing factor, MCM7 component [Replication, recombination and repair]
Probab=98.32 E-value=1e-06 Score=96.13 Aligned_cols=231 Identities=23% Similarity=0.217 Sum_probs=134.5
Q ss_pred cccCChHHHHHHHHHHHHhcChhHHhhcCCCCCCceEEeCCCCChHHHHHHHHHHhcCCCeeeechhhhHHHHhhcchHH
Q 007575 333 DVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFVELYVGMGASR 412 (597)
Q Consensus 333 dV~G~de~k~~L~eiv~~l~~p~~~~~lg~~~p~gVLL~GPPGTGKT~LArAIA~el~~pfi~is~sef~~~~vG~~e~~ 412 (597)
+|.|.+++|+.|.-++----....-..+.++.--+|+|.|.||+.|+.|.+++.+-+..-.+..--. +.-+|.+++-
T Consensus 343 EIyGheDVKKaLLLlLVGgvd~~~~dGMKIRGdINicLmGDPGVAKSQLLkyi~rlapRgvYTTGrG---SSGVGLTAAV 419 (721)
T KOG0482|consen 343 EIYGHEDVKKALLLLLVGGVDKSPGDGMKIRGDINICLMGDPGVAKSQLLKYISRLAPRGVYTTGRG---SSGVGLTAAV 419 (721)
T ss_pred hhccchHHHHHHHHHhhCCCCCCCCCCceeecceeEEecCCCchhHHHHHHHHHhcCcccceecCCC---CCccccchhh
Confidence 6899999999988766542111111122234456799999999999999999998776555543211 1113333333
Q ss_pred HHHH-----------HHHHHhcCCeEEEEcCcchhhhhcCCcccccchhHHHHHHHHHHHHhcCC--CCCCcEEEEEecC
Q 007575 413 VRDL-----------FARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGF--DSNSAVIVLGATN 479 (597)
Q Consensus 413 vr~l-----------F~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~eqtLnqLL~emdg~--~~~~~VIVIaaTN 479 (597)
.++- +-.|- ..|..|||+|.+.... +...|+..+|.--.+-.. |+ .-+.+.-|+||.|
T Consensus 420 mkDpvTgEM~LEGGALVLAD---~GICCIDEfDKM~e~D----RtAIHEVMEQQTISIaKA--GI~TtLNAR~sILaAAN 490 (721)
T KOG0482|consen 420 MKDPVTGEMVLEGGALVLAD---GGICCIDEFDKMDESD----RTAIHEVMEQQTISIAKA--GINTTLNARTSILAAAN 490 (721)
T ss_pred hcCCCCCeeEeccceEEEcc---CceEeehhhhhhhhhh----hHHHHHHHHhhhhhhhhh--ccccchhhhHHhhhhcC
Confidence 2221 11111 2388999999987543 234566555543222221 22 1245567888888
Q ss_pred CCC-------------CCChhhhCCCCcceEEE-ecCCCHHHHHHHHHH----HHhcCCCCCC-CCCCHHHH------HH
Q 007575 480 RSD-------------VLDPALRRPGRFDRVVM-VETPDKIGREAILKV----HVSKKELPLA-KDIDLGDI------AS 534 (597)
Q Consensus 480 rpd-------------~LD~aLlRpgRFd~~I~-v~~Pd~~eR~eILk~----~l~~~~~~l~-~dvdl~~L------A~ 534 (597)
... .|+.||++ |||...- .+.||.+.-+.+.++ |...+.-++. +.++.+.+ ++
T Consensus 491 PayGRYnprrs~e~NI~LPaALLS--RFDll~Li~D~pdrd~D~~LA~HiTyVH~H~~qp~~~fepl~~~~mR~yI~~ak 568 (721)
T KOG0482|consen 491 PAYGRYNPRRSPEQNINLPAALLS--RFDLLWLIQDRPDRDNDLRLAQHITYVHQHEEQPPLDFEPLDPNLMRRYISLAK 568 (721)
T ss_pred ccccccCcccChhHhcCCcHHHHH--hhhhhhhhccCCcccchHHHHHHhHhhhccCCCCCccCCCCCHHHHHHHHHHHh
Confidence 632 57899999 9996543 356776544443332 2222211100 01121111 00
Q ss_pred h--------------------------C--C-CCCHHHHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHhc
Q 007575 535 M--------------------------T--T-GFTGADLANLVNEAALLAGRLNKVVVEKIDFIHAVERSIA 577 (597)
Q Consensus 535 ~--------------------------t--~-G~SgaDL~~Lv~eAal~A~r~~~~~It~~d~~~Al~~v~~ 577 (597)
. . . -.|++-|-.+++-+..+|..+-...|..+|+++|+.-.-.
T Consensus 569 ~~~P~vp~~l~dyi~~AYv~~Rrea~~~~~~t~ttpRtLL~IlRls~AlarLRls~~V~~~DV~EALRLme~ 640 (721)
T KOG0482|consen 569 RKNPVVPEALADYITGAYVELRREARSSKDFTYTTPRTLLGILRLSTALARLRLSDSVEEDDVNEALRLMEM 640 (721)
T ss_pred hcCCCCCHHHHHHHHHHHHHHHHHhhccCCCcccCHHHHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHh
Confidence 0 0 0 2467888888888888888888889999999999875533
No 249
>PF00493 MCM: MCM2/3/5 family This family extends the MCM domain of Prosite.; InterPro: IPR001208 MCM proteins are DNA-dependent ATPases required for the initiation of eukaryotic DNA replication [, , ]. In eukaryotes there is a family of six proteins, MCM2 to MCM7. They were first identified in yeast where most of them have a direct role in the initiation of chromosomal DNA replication by interacting directly with autonomously replicating sequences (ARS). They were thus called minichromosome maintenance proteins, MCM proteins []. This family is also present in the archebacteria in 1 to 4 copies. Methanocaldococcus jannaschii (Methanococcus jannaschii) has four members, MJ0363, MJ0961, MJ1489 and MJECL13. The "MCM motif" contains Walker-A and Walker-B type nucleotide binding motifs. The diagnostic sequence defining the MCMs is IDEFDKM. Only Mcm2 (aka Cdc19 or Nda1) has been subjected to mutational analysis in this region, and most mutations abolish its activity []. The presence of a putative ATP-binding domain implies that these proteins may be involved in an ATP-consuming step in the initiation of DNA replication in eukaryotes. The MCM proteins bind together in a large complex []. Within this complex, individual subunits associate with different affinities, and there is a tightly associated core of Mcm4 (Cdc21), Mcm6 (Mis5) and Mcm7 []. This core complex in human MCMs has been associated with helicase activity in vitro [], leading to the suggestion that the MCM proteins are the eukaryotic replicative helicase. Schizosaccharomyces pombe (Fission yeast) MCMs, like those in metazoans, are found in the nucleus throughout the cell cycle. This is in contrast to the Saccharomyces cerevisiae (Baker's yeast) in which MCM proteins move in and out of the nucleus during each cell cycle. The assembly of the MCM complex in S. pombe is required for MCM localisation, ensuring that only intact MCM complexes remain in the nucleus [].; GO: 0003677 DNA binding, 0005524 ATP binding, 0006260 DNA replication; PDB: 3F8T_A 3F9V_A.
Probab=98.32 E-value=9.3e-08 Score=101.76 Aligned_cols=223 Identities=24% Similarity=0.224 Sum_probs=112.4
Q ss_pred cccCChHHHHHHHHHHHH-hcChhHHhhcCCCCCCceEEeCCCCChHHHHHHHHHHhcCCCeeee-chhhhHHHHh----
Q 007575 333 DVAGVDEAKEELEEIVEF-LRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISC-SASEFVELYV---- 406 (597)
Q Consensus 333 dV~G~de~k~~L~eiv~~-l~~p~~~~~lg~~~p~gVLL~GPPGTGKT~LArAIA~el~~pfi~i-s~sef~~~~v---- 406 (597)
.|.|.+.+|..+.-.+-. ...... .....+..-+|||+|.||||||.|.+.++.-+...++.. ..+.-.+...
T Consensus 25 ~i~g~~~iK~aill~L~~~~~~~~~-~~~~~r~~ihiLlvGdpg~gKS~ll~~~~~~~pr~v~~~g~~~s~~gLta~~~~ 103 (331)
T PF00493_consen 25 SIYGHEDIKKAILLQLFGGVEKNDP-DGTRIRGNIHILLVGDPGTGKSQLLKYVAKLAPRSVYTSGKGSSAAGLTASVSR 103 (331)
T ss_dssp TTTT-HHHHHHHCCCCTT--SCCCC-T-TEE--S--EEEECSCHHCHHHHHHCCCCT-SSEEEEECCGSTCCCCCEEECC
T ss_pred cCcCcHHHHHHHHHHHHhccccccc-cccccccccceeeccchhhhHHHHHHHHHhhCCceEEECCCCcccCCccceecc
Confidence 467887776554322111 110000 001123456899999999999999998876544333211 1110000000
Q ss_pred --hcchHHH-HHHHHHHHhcCCeEEEEcCcchhhhhcCCcccccchhHHHHHHHHHHHHhcCCC-----------CCCcE
Q 007575 407 --GMGASRV-RDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFD-----------SNSAV 472 (597)
Q Consensus 407 --G~~e~~v-r~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~eqtLnqLL~emdg~~-----------~~~~V 472 (597)
..++-.+ ...+-.|..+ |++|||+|.+-.. ....|+..|+.-. -+...
T Consensus 104 d~~~~~~~leaGalvlad~G---iccIDe~dk~~~~---------------~~~~l~eaMEqq~isi~kagi~~~l~ar~ 165 (331)
T PF00493_consen 104 DPVTGEWVLEAGALVLADGG---ICCIDEFDKMKED---------------DRDALHEAMEQQTISIAKAGIVTTLNARC 165 (331)
T ss_dssp CGGTSSECEEE-HHHHCTTS---EEEECTTTT--CH---------------HHHHHHHHHHCSCEEECTSSSEEEEE---
T ss_pred ccccceeEEeCCchhcccCc---eeeecccccccch---------------HHHHHHHHHHcCeeccchhhhcccccchh
Confidence 0000000 0123334333 9999999998532 2356777776421 13457
Q ss_pred EEEEecCCCC-------------CCChhhhCCCCcceEEEe-cCCCHHHHHHHHHHHHhcCCC--------------CCC
Q 007575 473 IVLGATNRSD-------------VLDPALRRPGRFDRVVMV-ETPDKIGREAILKVHVSKKEL--------------PLA 524 (597)
Q Consensus 473 IVIaaTNrpd-------------~LD~aLlRpgRFd~~I~v-~~Pd~~eR~eILk~~l~~~~~--------------~l~ 524 (597)
-|+|++|... .+++.|++ |||..+.+ +.|+.+.-..+.++.+..... .+.
T Consensus 166 svlaa~NP~~g~~~~~~~~~~ni~l~~~LLS--RFDLif~l~D~~d~~~D~~la~~il~~~~~~~~~~~~~~~~~~~~~~ 243 (331)
T PF00493_consen 166 SVLAAANPKFGRYDPNKSLSENINLPPPLLS--RFDLIFLLRDKPDEEEDERLAEHILDSHRNGKKSKEKKIKKNDKPIS 243 (331)
T ss_dssp EEEEEE--TT--S-TTS-CGCCT-S-CCCHC--C-SEEECC--TTT-HHHHHHHHHHHTTT---S--------SSS-TT-
T ss_pred hhHHHHhhhhhhcchhhhhHHhcccchhhHh--hcCEEEEeccccccccccccceEEEeccccccccccccccccCCccC
Confidence 7999998754 46788998 99977665 667765555555444332100 111
Q ss_pred CCCC-------------------HHHHHHh-------------CCCCCHHHHHHHHHHHHHHHHhcCCCcccHHHHHHHH
Q 007575 525 KDID-------------------LGDIASM-------------TTGFTGADLANLVNEAALLAGRLNKVVVEKIDFIHAV 572 (597)
Q Consensus 525 ~dvd-------------------l~~LA~~-------------t~G~SgaDL~~Lv~eAal~A~r~~~~~It~~d~~~Al 572 (597)
.+.- .+.|... ....+.+.|+.+++-|...|..+-+..|+.+|+..|+
T Consensus 244 ~~~lr~yI~yar~~~~P~ls~ea~~~I~~~Yv~lR~~~~~~~~~~~iT~R~LeSLIRLseA~AKl~lr~~V~~~Dv~~Ai 323 (331)
T PF00493_consen 244 EDLLRKYIAYARQNIHPVLSEEAKELIINYYVELRKESKSNNKSIPITIRQLESLIRLSEAHAKLRLRDEVTEEDVEEAI 323 (331)
T ss_dssp HCCCHHHHHHHHHHC--EE-HHCHHHHHHHHCCCCHCHHCHSS-B-SSCCCCCHHHHHHHHHHHCTTSSECSHHHHHHHH
T ss_pred HHHHHHHHHHHHhhcccccCHHHHHHHHHHHHHhcccccccccccccchhhHHHHHHHHHHHHHHhccCceeHHHHHHHH
Confidence 1110 1111110 1124567888999999999999999999999999998
Q ss_pred HHHh
Q 007575 573 ERSI 576 (597)
Q Consensus 573 ~~v~ 576 (597)
+-+.
T Consensus 324 ~L~~ 327 (331)
T PF00493_consen 324 RLFE 327 (331)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 7543
No 250
>PF03969 AFG1_ATPase: AFG1-like ATPase; InterPro: IPR005654 ATPase family gene 1 (AFG1) ATPase is a 377 amino acid putative protein with an ATPase motif typical of the protein family including SEC18p PAS1, CDC48-VCP and TBP. AFG1 also has substantial homology to these proteins outside the ATPase domain []. This family of proteins contains a P-loop motif.; GO: 0005524 ATP binding
Probab=98.31 E-value=3.5e-06 Score=90.80 Aligned_cols=103 Identities=20% Similarity=0.300 Sum_probs=62.7
Q ss_pred CCCCCceEEeCCCCChHHHHHHHHHHhcCC-CeeeechhhhHHHHhh------cchHHHHHHHHHHHhcCCeEEEEcCcc
Q 007575 362 ARPPRGVLLVGLPGTGKTLLAKAVAGEAEV-PFISCSASEFVELYVG------MGASRVRDLFARAKKEAPSIIFIDEID 434 (597)
Q Consensus 362 ~~~p~gVLL~GPPGTGKT~LArAIA~el~~-pfi~is~sef~~~~vG------~~e~~vr~lF~~A~~~aP~ILfIDEID 434 (597)
...|+|++|+||+|+|||+|+-.+...+.. .-..++-.+|+..... .....+..+.+...... .+|+|||++
T Consensus 59 ~~~~~GlYl~G~vG~GKT~Lmd~f~~~lp~~~k~R~HFh~Fm~~vh~~l~~~~~~~~~l~~va~~l~~~~-~lLcfDEF~ 137 (362)
T PF03969_consen 59 PPPPKGLYLWGPVGRGKTMLMDLFYDSLPIKRKRRVHFHEFMLDVHSRLHQLRGQDDPLPQVADELAKES-RLLCFDEFQ 137 (362)
T ss_pred CCCCceEEEECCCCCchhHHHHHHHHhCCccccccccccHHHHHHHHHHHHHhCCCccHHHHHHHHHhcC-CEEEEeeee
Confidence 457999999999999999999999887754 1122222233222111 11122333333333333 399999986
Q ss_pred hhhhhcCCcccccchhHHHHHHHHHHHHhcCCCCCCcEEEEEecCCC
Q 007575 435 AVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATNRS 481 (597)
Q Consensus 435 aL~~~r~~~~~~~~~~e~eqtLnqLL~emdg~~~~~~VIVIaaTNrp 481 (597)
.-- -...-.+..|+..+- ..++++|+|+|++
T Consensus 138 V~D------------iaDAmil~rLf~~l~----~~gvvlVaTSN~~ 168 (362)
T PF03969_consen 138 VTD------------IADAMILKRLFEALF----KRGVVLVATSNRP 168 (362)
T ss_pred ccc------------hhHHHHHHHHHHHHH----HCCCEEEecCCCC
Confidence 521 111345566666664 4678999999986
No 251
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=98.29 E-value=4.5e-06 Score=77.05 Aligned_cols=109 Identities=20% Similarity=0.214 Sum_probs=62.2
Q ss_pred eEEeCCCCChHHHHHHHHHHhc---CCCeeeechhhhHHHHh----------------------hc--chHHHHHHHHHH
Q 007575 368 VLLVGLPGTGKTLLAKAVAGEA---EVPFISCSASEFVELYV----------------------GM--GASRVRDLFARA 420 (597)
Q Consensus 368 VLL~GPPGTGKT~LArAIA~el---~~pfi~is~sef~~~~v----------------------G~--~e~~vr~lF~~A 420 (597)
++|+||||+|||+++..++..+ +.+++.++......... .. .....+.....+
T Consensus 2 ~~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (165)
T cd01120 2 ILVFGPTGSGKTTLALQLALNIATKGGKVVYVDIEEEIEELTERLIGESLKGALDNLIIVFATADDPAAARLLSKAERLR 81 (165)
T ss_pred eeEeCCCCCCHHHHHHHHHHHHHhcCCEEEEEECCcchHHHHHHHhhhhhccccccEEEEEcCCCCCcHHHHHHHHHHHH
Confidence 6899999999999999998876 45666665543222110 00 011112234555
Q ss_pred HhcCCeEEEEcCcchhhhhcCCcccccchhHHHHHHHHHHHHhcCCCCCCcEEEEEecCCC
Q 007575 421 KKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATNRS 481 (597)
Q Consensus 421 ~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~eqtLnqLL~emdg~~~~~~VIVIaaTNrp 481 (597)
....|.+|+|||+..+....... .........+.+..+...+.. .++.+|++++..
T Consensus 82 ~~~~~~~lviDe~~~~~~~~~~~-~~~~~~~~~~~l~~l~~~~~~----~~~~vv~~~~~~ 137 (165)
T cd01120 82 ERGGDDLIILDELTRLVRALREI-REGYPGELDEELRELLERARK----GGVTVIFTLQVP 137 (165)
T ss_pred hCCCCEEEEEEcHHHHHHHHHHH-HhcCChHHHHHHHHHHHHHhc----CCceEEEEEecC
Confidence 66778899999999987543210 011222334445555555432 345555555544
No 252
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=98.27 E-value=1.2e-05 Score=98.79 Aligned_cols=180 Identities=19% Similarity=0.275 Sum_probs=101.1
Q ss_pred CCcccccccCChHHHHHHHHHHHHhcChhHHhhcCCCCCCceEEeCCCCChHHHHHHHHHHhcCCCee---eech---hh
Q 007575 327 DTITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFI---SCSA---SE 400 (597)
Q Consensus 327 ~~vtf~dV~G~de~k~~L~eiv~~l~~p~~~~~lg~~~p~gVLL~GPPGTGKT~LArAIA~el~~pfi---~is~---se 400 (597)
+...+++++|.++..++|.+.+.. .....+-|-|+||+|+|||+||+++++.....|- .++. ..
T Consensus 179 ~~~~~~~~vG~~~~l~~l~~lL~l----------~~~~~~vvgI~G~gGiGKTTLA~~l~~~l~~~F~g~vfv~~~~v~~ 248 (1153)
T PLN03210 179 PSNDFEDFVGIEDHIAKMSSLLHL----------ESEEVRMVGIWGSSGIGKTTIARALFSRLSRQFQSSVFIDRAFISK 248 (1153)
T ss_pred cCcccccccchHHHHHHHHHHHcc----------ccCceEEEEEEcCCCCchHHHHHHHHHHHhhcCCeEEEeecccccc
Confidence 345688999999988888777642 1223456889999999999999999887644331 1110 00
Q ss_pred hHHHH-----------hhcchHHHH-------------HHHHHHHhcCCeEEEEcCcchhhhhcCCcccccchhHHHHHH
Q 007575 401 FVELY-----------VGMGASRVR-------------DLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTL 456 (597)
Q Consensus 401 f~~~~-----------vG~~e~~vr-------------~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~eqtL 456 (597)
....+ .......+. ..+++.....+.+|+||++|.. ..+
T Consensus 249 ~~~~~~~~~~~~~~~~~~l~~~~l~~il~~~~~~~~~~~~~~~~L~~krvLLVLDdv~~~-----------------~~l 311 (1153)
T PLN03210 249 SMEIYSSANPDDYNMKLHLQRAFLSEILDKKDIKIYHLGAMEERLKHRKVLIFIDDLDDQ-----------------DVL 311 (1153)
T ss_pred chhhcccccccccchhHHHHHHHHHHHhCCCCcccCCHHHHHHHHhCCeEEEEEeCCCCH-----------------HHH
Confidence 00000 000000000 1222333456779999998642 123
Q ss_pred HHHHHHhcCCCCCCcEEEEEecCCCCCCChhhhCCCCcceEEEecCCCHHHHHHHHHHHHhcCCCCCCCCC-C-HHHHHH
Q 007575 457 NQLLTEMDGFDSNSAVIVLGATNRSDVLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKDI-D-LGDIAS 534 (597)
Q Consensus 457 nqLL~emdg~~~~~~VIVIaaTNrpd~LD~aLlRpgRFd~~I~v~~Pd~~eR~eILk~~l~~~~~~l~~dv-d-l~~LA~ 534 (597)
..+....+.+. . +-.||.||.. ..+.+....++.+.++.|+.++-.+++..++-+...+ .++. + ...+++
T Consensus 312 ~~L~~~~~~~~-~-GsrIIiTTrd-----~~vl~~~~~~~~~~v~~l~~~ea~~LF~~~Af~~~~~-~~~~~~l~~~iv~ 383 (1153)
T PLN03210 312 DALAGQTQWFG-S-GSRIIVITKD-----KHFLRAHGIDHIYEVCLPSNELALEMFCRSAFKKNSP-PDGFMELASEVAL 383 (1153)
T ss_pred HHHHhhCccCC-C-CcEEEEEeCc-----HHHHHhcCCCeEEEecCCCHHHHHHHHHHHhcCCCCC-cHHHHHHHHHHHH
Confidence 34433333222 2 2234446653 3444433577899999999999999999887543221 1110 1 244667
Q ss_pred hCCCCCH
Q 007575 535 MTTGFTG 541 (597)
Q Consensus 535 ~t~G~Sg 541 (597)
++.|..-
T Consensus 384 ~c~GLPL 390 (1153)
T PLN03210 384 RAGNLPL 390 (1153)
T ss_pred HhCCCcH
Confidence 7777543
No 253
>KOG0480 consensus DNA replication licensing factor, MCM6 component [Replication, recombination and repair]
Probab=98.27 E-value=2.6e-06 Score=95.20 Aligned_cols=224 Identities=20% Similarity=0.202 Sum_probs=130.1
Q ss_pred cccccCChHHHHHHHHHHHH-hcChhHHhhcCCCCCCceEEeCCCCChHHHHHHHHHHhcCCCeeeechhhhHHHHhhcc
Q 007575 331 FADVAGVDEAKEELEEIVEF-LRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFVELYVGMG 409 (597)
Q Consensus 331 f~dV~G~de~k~~L~eiv~~-l~~p~~~~~lg~~~p~gVLL~GPPGTGKT~LArAIA~el~~pfi~is~sef~~~~vG~~ 409 (597)
|-.|.|.+.+|.-+.-.+-- ...... .....+.--+|+|+|.|||||+.+.+++++-+...++..--. +.-.|-+
T Consensus 344 ~PsIyGhe~VK~GilL~LfGGv~K~a~-eg~~lRGDinv~iVGDPgt~KSQfLk~v~~fsPR~vYtsGka---SSaAGLT 419 (764)
T KOG0480|consen 344 FPSIYGHELVKAGILLSLFGGVHKSAG-EGTSLRGDINVCIVGDPGTGKSQFLKAVCAFSPRSVYTSGKA---SSAAGLT 419 (764)
T ss_pred CccccchHHHHhhHHHHHhCCccccCC-CCccccCCceEEEeCCCCccHHHHHHHHhccCCcceEecCcc---cccccce
Confidence 45689999998776544322 221111 233455567899999999999999999998776555433110 0011222
Q ss_pred hHHHHH-----HHHHHHh---cCCeEEEEcCcchhhhhcCCcccccchhHHHHHHHHHHHHhcCC-----------CCCC
Q 007575 410 ASRVRD-----LFARAKK---EAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGF-----------DSNS 470 (597)
Q Consensus 410 e~~vr~-----lF~~A~~---~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~eqtLnqLL~emdg~-----------~~~~ 470 (597)
++.+++ ..-+|-. ....|..|||+|.+..+.+ ..++..|+.- .-+.
T Consensus 420 aaVvkD~esgdf~iEAGALmLADnGICCIDEFDKMd~~dq---------------vAihEAMEQQtISIaKAGv~aTLnA 484 (764)
T KOG0480|consen 420 AAVVKDEESGDFTIEAGALMLADNGICCIDEFDKMDVKDQ---------------VAIHEAMEQQTISIAKAGVVATLNA 484 (764)
T ss_pred EEEEecCCCCceeeecCcEEEccCceEEechhcccChHhH---------------HHHHHHHHhheehheecceEEeecc
Confidence 221111 0111111 1123899999999865322 2344444421 1123
Q ss_pred cEEEEEecCCCC-------------CCChhhhCCCCcceEE-EecCCCHHHHHHHHHHHHhcCC-C--------------
Q 007575 471 AVIVLGATNRSD-------------VLDPALRRPGRFDRVV-MVETPDKIGREAILKVHVSKKE-L-------------- 521 (597)
Q Consensus 471 ~VIVIaaTNrpd-------------~LD~aLlRpgRFd~~I-~v~~Pd~~eR~eILk~~l~~~~-~-------------- 521 (597)
+--||||+|... .+++++++ |||..+ -++-|+...-..|-++.+.... +
T Consensus 485 RtSIlAAANPv~GhYdR~ktl~eNi~msApimS--RFDL~FiLlD~~nE~~D~~ia~hIld~h~~i~~~~~~~~~~~~e~ 562 (764)
T KOG0480|consen 485 RTSILAAANPVGGHYDRKKTLRENINMSAPIMS--RFDLFFILLDDCNEVVDYAIARHILDLHRGIDDATERVCVYTLEQ 562 (764)
T ss_pred hhhhhhhcCCcCCccccccchhhhcCCCchhhh--hhcEEEEEecCCchHHHHHHHHHHHHHhccccccccccccccHHH
Confidence 445888888742 46889999 999654 4567776554444433332110 0
Q ss_pred ---------CCCCCCC---HHHHH---------------HhCCCCCHHHHHHHHHHHHHHHHhcCCCcccHHHHHHHHHH
Q 007575 522 ---------PLAKDID---LGDIA---------------SMTTGFTGADLANLVNEAALLAGRLNKVVVEKIDFIHAVER 574 (597)
Q Consensus 522 ---------~l~~dvd---l~~LA---------------~~t~G~SgaDL~~Lv~eAal~A~r~~~~~It~~d~~~Al~~ 574 (597)
.+.|.+. -+.|. +-+.+.|.++|+.|++-+-..|.....+.||.+|+++|++-
T Consensus 563 vrkYi~yAR~~~P~ls~ea~~~lve~Y~~lR~~~~~~~~~~s~~ITvRqLESlIRLsEA~Ar~~~~devt~~~v~ea~eL 642 (764)
T KOG0480|consen 563 VRKYIRYARNFKPKLSKEASEMLVEKYKGLRQRDAQGNNRSSYRITVRQLESLIRLSEARARVECRDEVTKEDVEEAVEL 642 (764)
T ss_pred HHHHHHHHHhcCccccHHHHHHHHHHHHHHHHhhccccCcccccccHHHHHHHHHHHHHHHhhhhhhhccHHHHHHHHHH
Confidence 0011110 01111 11235677999999999988898888999999999999876
Q ss_pred H
Q 007575 575 S 575 (597)
Q Consensus 575 v 575 (597)
.
T Consensus 643 l 643 (764)
T KOG0480|consen 643 L 643 (764)
T ss_pred H
Confidence 4
No 254
>COG3267 ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion]
Probab=98.24 E-value=3.2e-05 Score=78.84 Aligned_cols=188 Identities=20% Similarity=0.200 Sum_probs=117.2
Q ss_pred ceEEeCCCCChHHHHHHHHHHhcC---CCeeeec-----hhhhHHHHhhc------------chHHHHHHHHHHHh-cCC
Q 007575 367 GVLLVGLPGTGKTLLAKAVAGEAE---VPFISCS-----ASEFVELYVGM------------GASRVRDLFARAKK-EAP 425 (597)
Q Consensus 367 gVLL~GPPGTGKT~LArAIA~el~---~pfi~is-----~sef~~~~vG~------------~e~~vr~lF~~A~~-~aP 425 (597)
-+.++|+-|+|||.+.||+...++ +-.++++ ...+.+.++.+ .++.-+.+....++ ..|
T Consensus 53 ~~~vtGevGsGKTv~~Ral~~s~~~d~~~~v~i~~~~~s~~~~~~ai~~~l~~~p~~~~~~~~e~~~~~L~al~~~g~r~ 132 (269)
T COG3267 53 ILAVTGEVGSGKTVLRRALLASLNEDQVAVVVIDKPTLSDATLLEAIVADLESQPKVNVNAVLEQIDRELAALVKKGKRP 132 (269)
T ss_pred eEEEEecCCCchhHHHHHHHHhcCCCceEEEEecCcchhHHHHHHHHHHHhccCccchhHHHHHHHHHHHHHHHHhCCCC
Confidence 367999999999999997776553 2222332 22333332222 12223344444444 346
Q ss_pred eEEEEcCcchhhhhcCCcccccchhHHHHHHHHHHHHhcCCCCCCcEEEEEecCCCCCC-C---hhhhCCCCcceEEEec
Q 007575 426 SIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATNRSDVL-D---PALRRPGRFDRVVMVE 501 (597)
Q Consensus 426 ~ILfIDEIDaL~~~r~~~~~~~~~~e~eqtLnqLL~emdg~~~~~~VIVIaaTNrpd~L-D---~aLlRpgRFd~~I~v~ 501 (597)
.++++||.+.+..+. -..+.-|.+.-++....-.|++|+-..--..+ - .++.. |++..+.++
T Consensus 133 v~l~vdEah~L~~~~------------le~Lrll~nl~~~~~~~l~ivL~Gqp~L~~~lr~~~l~e~~~--R~~ir~~l~ 198 (269)
T COG3267 133 VVLMVDEAHDLNDSA------------LEALRLLTNLEEDSSKLLSIVLIGQPKLRPRLRLPVLRELEQ--RIDIRIELP 198 (269)
T ss_pred eEEeehhHhhhChhH------------HHHHHHHHhhcccccCceeeeecCCcccchhhchHHHHhhhh--eEEEEEecC
Confidence 899999999885331 12222233322333444557776654321111 1 12233 787668888
Q ss_pred CCCHHHHHHHHHHHHhcC--CCCCCCCCCHHHHHHhCCCCCHHHHHHHHHHHHHHHHhcCCCcccHHHHH
Q 007575 502 TPDKIGREAILKVHVSKK--ELPLAKDIDLGDIASMTTGFTGADLANLVNEAALLAGRLNKVVVEKIDFI 569 (597)
Q Consensus 502 ~Pd~~eR~eILk~~l~~~--~~~l~~dvdl~~LA~~t~G~SgaDL~~Lv~eAal~A~r~~~~~It~~d~~ 569 (597)
+.+.++-...++.+++.- +.++..+-.+..+...+.| .|+-+.++|..|...|...+...|+...++
T Consensus 199 P~~~~~t~~yl~~~Le~a~~~~~l~~~~a~~~i~~~sqg-~P~lin~~~~~Al~~a~~a~~~~v~~a~~~ 267 (269)
T COG3267 199 PLTEAETGLYLRHRLEGAGLPEPLFSDDALLLIHEASQG-IPRLINNLATLALDAAYSAGEDGVSEAEIK 267 (269)
T ss_pred CcChHHHHHHHHHHHhccCCCcccCChhHHHHHHHHhcc-chHHHHHHHHHHHHHHHHcCCCccchhhcc
Confidence 889999999999999763 2233333347778888888 588899999999999999999988877654
No 255
>COG1241 MCM2 Predicted ATPase involved in replication control, Cdc46/Mcm family [DNA replication, recombination, and repair]
Probab=98.20 E-value=4.2e-06 Score=95.99 Aligned_cols=221 Identities=26% Similarity=0.273 Sum_probs=129.5
Q ss_pred cccCChHHHHHHHHHHHHhcChhHHhhcC--CCCCCceEEeCCCCChHHHHHHHHHHhcCCCeee-echhhhHHHHhhcc
Q 007575 333 DVAGVDEAKEELEEIVEFLRSPDKYIRLG--ARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFIS-CSASEFVELYVGMG 409 (597)
Q Consensus 333 dV~G~de~k~~L~eiv~~l~~p~~~~~lg--~~~p~gVLL~GPPGTGKT~LArAIA~el~~pfi~-is~sef~~~~vG~~ 409 (597)
.+.|++++|+.|.-.+- .-..+...-| .+.--+|||.|.||||||.|.+.+++-+...++. -.++. -+|.+
T Consensus 287 sIyG~e~VKkAilLqLf--gGv~k~~~~g~~iRGDInILLvGDPgtaKSqlLk~v~~~aPr~vytsgkgss----~~GLT 360 (682)
T COG1241 287 SIYGHEDVKKAILLQLF--GGVKKNLPDGTRIRGDIHILLVGDPGTAKSQLLKYVAKLAPRGVYTSGKGSS----AAGLT 360 (682)
T ss_pred cccCcHHHHHHHHHHhc--CCCcccCCCCcccccceeEEEcCCCchhHHHHHHHHHhhCCceEEEcccccc----ccCce
Confidence 47899998877654332 1111111111 2334579999999999999999999887655443 22221 12333
Q ss_pred hHHHHHHH--H---HHH---hcCCeEEEEcCcchhhhhcCCcccccchhHHHHHHHHHHHHhcCC-----------CCCC
Q 007575 410 ASRVRDLF--A---RAK---KEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGF-----------DSNS 470 (597)
Q Consensus 410 e~~vr~lF--~---~A~---~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~eqtLnqLL~emdg~-----------~~~~ 470 (597)
+..+++-+ + +|- -..+.|++|||+|.+-... -+.+...|+.- .-+.
T Consensus 361 Aav~rd~~tge~~LeaGALVlAD~Gv~cIDEfdKm~~~d---------------r~aihEaMEQQtIsIaKAGI~atLnA 425 (682)
T COG1241 361 AAVVRDKVTGEWVLEAGALVLADGGVCCIDEFDKMNEED---------------RVAIHEAMEQQTISIAKAGITATLNA 425 (682)
T ss_pred eEEEEccCCCeEEEeCCEEEEecCCEEEEEeccCCChHH---------------HHHHHHHHHhcEeeecccceeeecch
Confidence 33333322 1 111 1224599999999875321 13444444421 1134
Q ss_pred cEEEEEecCCCC-------------CCChhhhCCCCcceEEEec-CCCHHHH----HHHHHHHHhc--------------
Q 007575 471 AVIVLGATNRSD-------------VLDPALRRPGRFDRVVMVE-TPDKIGR----EAILKVHVSK-------------- 518 (597)
Q Consensus 471 ~VIVIaaTNrpd-------------~LD~aLlRpgRFd~~I~v~-~Pd~~eR----~eILk~~l~~-------------- 518 (597)
..-|+||+|... .|++.|++ |||..+.+. .|+.+.= ..++..|...
T Consensus 426 RcsvLAAaNP~~Gryd~~~~~~enI~l~~~lLS--RFDLifvl~D~~d~~~D~~ia~hil~~h~~~~~~~~~~~~~~~~~ 503 (682)
T COG1241 426 RCSVLAAANPKFGRYDPKKTVAENINLPAPLLS--RFDLIFVLKDDPDEEKDEEIAEHILDKHRGEEPEETISLDGVDEV 503 (682)
T ss_pred hhhhhhhhCCCCCcCCCCCCHHHhcCCChhHHh--hCCeeEEecCCCCccchHHHHHHHHHHHhcccccccccccccccc
Confidence 456888888753 46888999 999776553 5655322 2344444210
Q ss_pred ----------------CCC-CCCCCCCHHHHHH---------------hCCCCCHHHHHHHHHHHHHHHHhcCCCcccHH
Q 007575 519 ----------------KEL-PLAKDIDLGDIAS---------------MTTGFTGADLANLVNEAALLAGRLNKVVVEKI 566 (597)
Q Consensus 519 ----------------~~~-~l~~dvdl~~LA~---------------~t~G~SgaDL~~Lv~eAal~A~r~~~~~It~~ 566 (597)
... |.-.+...+.|.. .+..-|.++|+.+++-|-..|..+-...|+.+
T Consensus 504 ~~~~~~~lrkYI~YAR~~v~P~lt~ea~e~l~~~Yv~~Rk~~~~~~~~~~~piT~RqLEsiiRLaeA~Ak~rLS~~V~~e 583 (682)
T COG1241 504 EERDFELLRKYISYARKNVTPVLTEEAREELEDYYVEMRKKSALVEEKRTIPITARQLESIIRLAEAHAKMRLSDVVEEE 583 (682)
T ss_pred ccCcHHHHHHHHHHHhccCCcccCHHHHHHHHHHHHHhhhccccccccCcccccHHHHHHHHHHHHHHHhhhccCCCCHH
Confidence 001 1111111122211 11235789999999999999999999999999
Q ss_pred HHHHHHHHHh
Q 007575 567 DFIHAVERSI 576 (597)
Q Consensus 567 d~~~Al~~v~ 576 (597)
|+++|++-+.
T Consensus 584 D~~eAi~lv~ 593 (682)
T COG1241 584 DVDEAIRLVD 593 (682)
T ss_pred HHHHHHHHHH
Confidence 9999987664
No 256
>PF12775 AAA_7: P-loop containing dynein motor region D3; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=98.19 E-value=2.7e-06 Score=88.31 Aligned_cols=133 Identities=23% Similarity=0.399 Sum_probs=73.5
Q ss_pred CceEEeCCCCChHHHHHHHHHHhcCC-C--eeeechhhhHHHHhhcchHHHHHHHHHH-----------HhcCCeEEEEc
Q 007575 366 RGVLLVGLPGTGKTLLAKAVAGEAEV-P--FISCSASEFVELYVGMGASRVRDLFARA-----------KKEAPSIIFID 431 (597)
Q Consensus 366 ~gVLL~GPPGTGKT~LArAIA~el~~-p--fi~is~sef~~~~vG~~e~~vr~lF~~A-----------~~~aP~ILfID 431 (597)
+++||+||+|||||.+++..-.++.- . ...++++..- +...+..+++.. ..+..+|+|||
T Consensus 34 ~pvLl~G~~GtGKT~li~~~l~~l~~~~~~~~~~~~s~~T------ts~~~q~~ie~~l~k~~~~~~gP~~~k~lv~fiD 107 (272)
T PF12775_consen 34 RPVLLVGPSGTGKTSLIQNFLSSLDSDKYLVITINFSAQT------TSNQLQKIIESKLEKRRGRVYGPPGGKKLVLFID 107 (272)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHCSTTCCEEEEEEES-TTH------HHHHHHHCCCTTECECTTEEEEEESSSEEEEEEE
T ss_pred CcEEEECCCCCchhHHHHhhhccCCccccceeEeeccCCC------CHHHHHHHHhhcEEcCCCCCCCCCCCcEEEEEec
Confidence 47999999999999999998776542 2 2233333221 112222222111 11234699999
Q ss_pred CcchhhhhcCCcccccchhHHHHHHHHHHHHh-c--CCCC--------CCcEEEEEecCCC---CCCChhhhCCCCcceE
Q 007575 432 EIDAVAKSRDGRFRIVSNDEREQTLNQLLTEM-D--GFDS--------NSAVIVLGATNRS---DVLDPALRRPGRFDRV 497 (597)
Q Consensus 432 EIDaL~~~r~~~~~~~~~~e~eqtLnqLL~em-d--g~~~--------~~~VIVIaaTNrp---d~LD~aLlRpgRFd~~ 497 (597)
|+..-....-+ .+...+||.++ + |+-. -.++.+|||.+.+ ..+++.++| .|. .
T Consensus 108 DlN~p~~d~yg----------tq~~iElLRQ~i~~~g~yd~~~~~~~~i~~i~~vaa~~p~~Gr~~is~R~~r--~f~-i 174 (272)
T PF12775_consen 108 DLNMPQPDKYG----------TQPPIELLRQLIDYGGFYDRKKLEWKSIEDIQFVAAMNPTGGRNPISPRFLR--HFN-I 174 (272)
T ss_dssp TTT-S---TTS------------HHHHHHHHHHHCSEEECTTTTEEEEECSEEEEEEESSTTT--SHHHHHHT--TEE-E
T ss_pred ccCCCCCCCCC----------CcCHHHHHHHHHHhcCcccCCCcEEEEEeeeEEEEecCCCCCCCCCChHHhh--heE-E
Confidence 99764433211 12223444433 1 2211 1357888988864 247889998 774 8
Q ss_pred EEecCCCHHHHHHHHHHHHh
Q 007575 498 VMVETPDKIGREAILKVHVS 517 (597)
Q Consensus 498 I~v~~Pd~~eR~eILk~~l~ 517 (597)
+.++.|+.+....|+...+.
T Consensus 175 ~~~~~p~~~sl~~If~~il~ 194 (272)
T PF12775_consen 175 LNIPYPSDESLNTIFSSILQ 194 (272)
T ss_dssp EE----TCCHHHHHHHHHHH
T ss_pred EEecCCChHHHHHHHHHHHh
Confidence 89999999888887776665
No 257
>PRK05917 DNA polymerase III subunit delta'; Validated
Probab=98.14 E-value=1.2e-05 Score=84.09 Aligned_cols=122 Identities=15% Similarity=0.178 Sum_probs=83.8
Q ss_pred CCCCCceEEeCCCCChHHHHHHHHHHhcCCCeeeech--------hhhHHHH-hh----cchHHHHHHHHHHHh----cC
Q 007575 362 ARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSA--------SEFVELY-VG----MGASRVRDLFARAKK----EA 424 (597)
Q Consensus 362 ~~~p~gVLL~GPPGTGKT~LArAIA~el~~pfi~is~--------sef~~~~-vG----~~e~~vr~lF~~A~~----~a 424 (597)
.+.|..+||+||+|+||+.+|.++|..+-+.--.-.| +|+.... .+ -+.+.+|++.+.+.. +.
T Consensus 16 ~rl~HAyLf~G~~G~Gk~~lA~~~A~~llC~~~~~~c~~~~~~~HPD~~~i~p~~~~~~I~idqiR~l~~~~~~~p~e~~ 95 (290)
T PRK05917 16 QKVPSAIILHGQDLSNLSARAYELASLILKETSPEAAYKISQKIHPDIHEFSPQGKGRLHSIETPRAIKKQIWIHPYESP 95 (290)
T ss_pred CCcCeeEeeECCCCCcHHHHHHHHHHHHhCCCCccHHHHHhcCCCCCEEEEecCCCCCcCcHHHHHHHHHHHhhCccCCC
Confidence 4567789999999999999999999987442100111 1110000 11 134566777666543 23
Q ss_pred CeEEEEcCcchhhhhcCCcccccchhHHHHHHHHHHHHhcCCCCCCcEEEEEecCCCCCCChhhhCCCCcceEEEecCC
Q 007575 425 PSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATNRSDVLDPALRRPGRFDRVVMVETP 503 (597)
Q Consensus 425 P~ILfIDEIDaL~~~r~~~~~~~~~~e~eqtLnqLL~emdg~~~~~~VIVIaaTNrpd~LD~aLlRpgRFd~~I~v~~P 503 (597)
..|++||++|.+.. ...|.||..|+. ++.++++|..|+.++.|.|.+++ |+. .+.|+++
T Consensus 96 ~kv~ii~~ad~mt~---------------~AaNaLLK~LEE--Pp~~~~fiL~~~~~~~ll~TI~S--Rcq-~~~~~~~ 154 (290)
T PRK05917 96 YKIYIIHEADRMTL---------------DAISAFLKVLED--PPQHGVIILTSAKPQRLPPTIRS--RSL-SIHIPME 154 (290)
T ss_pred ceEEEEechhhcCH---------------HHHHHHHHHhhc--CCCCeEEEEEeCChhhCcHHHHh--cce-EEEccch
Confidence 35999999999863 345899999994 56678888888889999999988 764 5666654
No 258
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=98.14 E-value=7.8e-06 Score=80.57 Aligned_cols=115 Identities=16% Similarity=0.201 Sum_probs=65.0
Q ss_pred CCCCCCceEEeCCCCChHHHHHHHHHHhc---CCCeeeechhhh-HHHHhh----------------------cchHHHH
Q 007575 361 GARPPRGVLLVGLPGTGKTLLAKAVAGEA---EVPFISCSASEF-VELYVG----------------------MGASRVR 414 (597)
Q Consensus 361 g~~~p~gVLL~GPPGTGKT~LArAIA~el---~~pfi~is~sef-~~~~vG----------------------~~e~~vr 414 (597)
|.+...-++|+||||+|||+++..++.+. +.+.++++..++ .+.+.. +....+.
T Consensus 8 Gi~~g~i~~i~G~~GsGKT~l~~~~~~~~~~~g~~v~yi~~e~~~~~rl~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 87 (209)
T TIGR02237 8 GVERGTITQIYGPPGSGKTNICMILAVNAARQGKKVVYIDTEGLSPERFKQIAEDRPERALSNFIVFEVFDFDEQGVAIQ 87 (209)
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCCCCHHHHHHHHHhChHHHhcCEEEEECCCHHHHHHHHH
Confidence 55666678999999999999999987643 566777766542 111100 0011233
Q ss_pred HHHHHHHhcCCeEEEEcCcchhhhhcCCcccccchhHHHHHHHHHHHHhcCCCCCCcEEEEEecC
Q 007575 415 DLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATN 479 (597)
Q Consensus 415 ~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~eqtLnqLL~emdg~~~~~~VIVIaaTN 479 (597)
.+.+.+....+++|+||-|.++....... ....+.+.+..++..|..+....++.+|.+..
T Consensus 88 ~l~~~~~~~~~~lvVIDSis~l~~~~~~~----~~~~~~~~l~~~~~~L~~~~~~~~v~vl~t~~ 148 (209)
T TIGR02237 88 KTSKFIDRDSASLVVVDSFTALYRLELSD----DRISRNRELARQLTLLLSLARKKNLAVVITNQ 148 (209)
T ss_pred HHHHHHhhcCccEEEEeCcHHHhHHHhCC----ccHHHHHHHHHHHHHHHHHHHHcCCEEEEEcc
Confidence 44444555678999999999986432111 11122223333333333333345566666654
No 259
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=98.12 E-value=2.9e-05 Score=79.68 Aligned_cols=174 Identities=23% Similarity=0.316 Sum_probs=91.4
Q ss_pred HHHHHHHHhcChhHHhhcCCCCCCceEEeCCCCChHHHHHHHHHHh--cCCCe-----eeech----hhhHHH---Hhhc
Q 007575 343 ELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGE--AEVPF-----ISCSA----SEFVEL---YVGM 408 (597)
Q Consensus 343 ~L~eiv~~l~~p~~~~~lg~~~p~gVLL~GPPGTGKT~LArAIA~e--l~~pf-----i~is~----sef~~~---~vG~ 408 (597)
+++++.+.|.... ...+-|.|+|++|+|||+||+.++.. ....| +.+.. .++... ..+.
T Consensus 4 ~~~~l~~~L~~~~-------~~~~~v~I~G~~G~GKT~LA~~~~~~~~~~~~f~~v~wv~~~~~~~~~~~~~~i~~~l~~ 76 (287)
T PF00931_consen 4 EIEKLKDWLLDNS-------NEVRVVAIVGMGGIGKTTLARQVARDLRIKNRFDGVIWVSLSKNPSLEQLLEQILRQLGE 76 (287)
T ss_dssp HHHHHHHHHHTTT-------TSSEEEEEEESTTSSHHHHHHHHHCHHHHCCCCTEEEEEEEES-SCCHHHHHHHHHHHTC
T ss_pred HHHHHHHHhhCCC-------CCeEEEEEEcCCcCCcceeeeecccccccccccccccccccccccccccccccccccccc
Confidence 4556666654421 34556899999999999999999987 33222 22221 111111 1111
Q ss_pred ---------chHHHHHHHHHHHhcCCeEEEEcCcchhhhhcCCcccccchhHHHHHHHHHHHHhcCCCCCCcEEEEEecC
Q 007575 409 ---------GASRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATN 479 (597)
Q Consensus 409 ---------~e~~vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~eqtLnqLL~emdg~~~~~~VIVIaaTN 479 (597)
......+.+.......+++|+||+++... .+..+...+.... .+.-||.||.
T Consensus 77 ~~~~~~~~~~~~~~~~~l~~~L~~~~~LlVlDdv~~~~-----------------~~~~l~~~~~~~~--~~~kilvTTR 137 (287)
T PF00931_consen 77 PDSSISDPKDIEELQDQLRELLKDKRCLLVLDDVWDEE-----------------DLEELREPLPSFS--SGSKILVTTR 137 (287)
T ss_dssp C-STSSCCSSHHHHHHHHHHHHCCTSEEEEEEEE-SHH-----------------HH-------HCHH--SS-EEEEEES
T ss_pred cccccccccccccccccchhhhccccceeeeeeecccc-----------------ccccccccccccc--cccccccccc
Confidence 12334444555555669999999987642 1222222222111 2344555665
Q ss_pred CCCCCChhhhCCCCcceEEEecCCCHHHHHHHHHHHHhcCCC-C-CCCCCCHHHHHHhCCCCCHHHHHHH
Q 007575 480 RSDVLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKKEL-P-LAKDIDLGDIASMTTGFTGADLANL 547 (597)
Q Consensus 480 rpd~LD~aLlRpgRFd~~I~v~~Pd~~eR~eILk~~l~~~~~-~-l~~dvdl~~LA~~t~G~SgaDL~~L 547 (597)
..... .... .-+..+.++..+.++-.+++..+...... . -..+-....|+..+.|. |-.|.-+
T Consensus 138 ~~~v~-~~~~---~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~~i~~~c~gl-PLal~~~ 202 (287)
T PF00931_consen 138 DRSVA-GSLG---GTDKVIELEPLSEEEALELFKKRAGRKESESPEDLEDLAKEIVEKCGGL-PLALKLI 202 (287)
T ss_dssp CGGGG-TTHH---SCEEEEECSS--HHHHHHHHHHHHTSHS----TTSCTHHHHHHHHTTT--HHHHHHH
T ss_pred ccccc-cccc---ccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccc
Confidence 43221 1111 11568999999999999999998765430 0 11112367889999874 5444433
No 260
>PRK05818 DNA polymerase III subunit delta'; Validated
Probab=98.09 E-value=5.7e-05 Score=77.75 Aligned_cols=121 Identities=13% Similarity=0.152 Sum_probs=82.7
Q ss_pred CCCCceEEeCCCCChHHHHHHHHHHhcCCC-----eeee-chhhh--------HHHH---hhcchHHHHHHHHHHHh---
Q 007575 363 RPPRGVLLVGLPGTGKTLLAKAVAGEAEVP-----FISC-SASEF--------VELY---VGMGASRVRDLFARAKK--- 422 (597)
Q Consensus 363 ~~p~gVLL~GPPGTGKT~LArAIA~el~~p-----fi~i-s~sef--------~~~~---vG~~e~~vr~lF~~A~~--- 422 (597)
.+|..+||+||+|+||..+|.++|..+-+. .-.+ +|..+ .-.+ ..-+.+.+|++.+....
T Consensus 5 ~~~HA~Lf~G~~G~G~~~lA~~~A~~llC~~~~~~Cg~C~sC~~i~~~~HPDl~~i~p~~~~I~id~ir~l~~~l~~~s~ 84 (261)
T PRK05818 5 NKTHPLLLIERKGSFLKPFLYEYLTSIVCTKANGFCKTCESCLKILNGKYNDFYLIFDQKNPIKKEDALSIINKLNRPSV 84 (261)
T ss_pred CCCcceeeeCCCCCcHHHHHHHHHHHHcCCCCCCCCCCCHHHHHHhcCCCCCEEEecCCcccCCHHHHHHHHHHHccCch
Confidence 467889999999999999999999876321 1000 11111 0000 01234556666655432
Q ss_pred --cCCeEEEEcCcchhhhhcCCcccccchhHHHHHHHHHHHHhcCCCCCCcEEEEEecCCCCCCChhhhCCCCcceEEEe
Q 007575 423 --EAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATNRSDVLDPALRRPGRFDRVVMV 500 (597)
Q Consensus 423 --~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~eqtLnqLL~emdg~~~~~~VIVIaaTNrpd~LD~aLlRpgRFd~~I~v 500 (597)
+...|++||++|.+.. ...|.||..++ ++..++++|..|+.++.+.|.+++ |.. .+.+
T Consensus 85 e~~~~KV~II~~ae~m~~---------------~AaNaLLK~LE--EPp~~t~fiLit~~~~~lLpTI~S--RCq-~~~~ 144 (261)
T PRK05818 85 ESNGKKIYIIYGIEKLNK---------------QSANSLLKLIE--EPPKNTYGIFTTRNENNILNTILS--RCV-QYVV 144 (261)
T ss_pred hcCCCEEEEeccHhhhCH---------------HHHHHHHHhhc--CCCCCeEEEEEECChHhCchHhhh--hee-eeec
Confidence 2346999999999863 35599999999 466778888999999999999999 764 4556
Q ss_pred cCC
Q 007575 501 ETP 503 (597)
Q Consensus 501 ~~P 503 (597)
+.+
T Consensus 145 ~~~ 147 (261)
T PRK05818 145 LSK 147 (261)
T ss_pred CCh
Confidence 555
No 261
>PRK07276 DNA polymerase III subunit delta'; Validated
Probab=98.02 E-value=0.0001 Score=77.18 Aligned_cols=129 Identities=17% Similarity=0.239 Sum_probs=85.6
Q ss_pred CCCCCceEEeCCCCChHHHHHHHHHHhcCCC-------eeee-ch--------hhhHHHH-hh--cchHHHHHHHHHHHh
Q 007575 362 ARPPRGVLLVGLPGTGKTLLAKAVAGEAEVP-------FISC-SA--------SEFVELY-VG--MGASRVRDLFARAKK 422 (597)
Q Consensus 362 ~~~p~gVLL~GPPGTGKT~LArAIA~el~~p-------fi~i-s~--------sef~~~~-vG--~~e~~vr~lF~~A~~ 422 (597)
.+.+..+||+|| +||+.+|+++|..+-+. .-.+ +| +|+.... .| -+...+|++.+.+..
T Consensus 21 ~rl~hAyLf~G~--~G~~~~A~~~A~~llC~~~~~~~~Cg~C~~C~~i~~~~HPD~~~i~p~~~~I~idqIR~l~~~~~~ 98 (290)
T PRK07276 21 DRLNHAYLFSGD--FASFEMALFLAQSLFCEQKEGVLPCGHCRSCRLIEQGEFSDVTVIEPQGQVIKTDTIRELVKNFSQ 98 (290)
T ss_pred CCcceeeeeeCC--ccHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCeeeecCCCCcCCHHHHHHHHHHHhh
Confidence 456778999996 68999999999865321 1011 11 1211110 01 134677777766643
Q ss_pred ----cCCeEEEEcCcchhhhhcCCcccccchhHHHHHHHHHHHHhcCCCCCCcEEEEEecCCCCCCChhhhCCCCcceEE
Q 007575 423 ----EAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATNRSDVLDPALRRPGRFDRVV 498 (597)
Q Consensus 423 ----~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~eqtLnqLL~emdg~~~~~~VIVIaaTNrpd~LD~aLlRpgRFd~~I 498 (597)
+...|++||++|.+.. ...|.||..++. +..++++|..|+.++.+-|.+++ |.. .+
T Consensus 99 ~p~~~~~kV~II~~ad~m~~---------------~AaNaLLKtLEE--Pp~~t~~iL~t~~~~~lLpTI~S--Rcq-~i 158 (290)
T PRK07276 99 SGYEGKQQVFIIKDADKMHV---------------NAANSLLKVIEE--PQSEIYIFLLTNDENKVLPTIKS--RTQ-IF 158 (290)
T ss_pred CcccCCcEEEEeehhhhcCH---------------HHHHHHHHHhcC--CCCCeEEEEEECChhhCchHHHH--cce-ee
Confidence 2346999999999863 345999999984 55667888888889999999998 774 67
Q ss_pred EecCCCHHHHHHHHH
Q 007575 499 MVETPDKIGREAILK 513 (597)
Q Consensus 499 ~v~~Pd~~eR~eILk 513 (597)
.|+. +.++..+++.
T Consensus 159 ~f~~-~~~~~~~~L~ 172 (290)
T PRK07276 159 HFPK-NEAYLIQLLE 172 (290)
T ss_pred eCCC-cHHHHHHHHH
Confidence 7755 4444444443
No 262
>PRK07132 DNA polymerase III subunit delta'; Validated
Probab=98.02 E-value=0.00012 Score=77.04 Aligned_cols=127 Identities=17% Similarity=0.158 Sum_probs=88.1
Q ss_pred CCCCceEEeCCCCChHHHHHHHHHHhcCC-----------C--eeeechhhhHHHHhhcchHHHHHHHHHHHh-----cC
Q 007575 363 RPPRGVLLVGLPGTGKTLLAKAVAGEAEV-----------P--FISCSASEFVELYVGMGASRVRDLFARAKK-----EA 424 (597)
Q Consensus 363 ~~p~gVLL~GPPGTGKT~LArAIA~el~~-----------p--fi~is~sef~~~~vG~~e~~vr~lF~~A~~-----~a 424 (597)
+.+...||+|+.|.||+.+|++++..+-+ | ++.++.. + ...+...++++.+.+.. +.
T Consensus 16 ~l~haYLf~G~eg~gk~~~a~~~a~~l~c~~~~~~~~~~~p~n~~~~d~~---g--~~i~vd~Ir~l~~~~~~~~~~~~~ 90 (299)
T PRK07132 16 KISHSFLLKSNYNEDIDEKILYFLNKFNNLQITNLNEQELPANIILFDIF---D--KDLSKSEFLSAINKLYFSSFVQSQ 90 (299)
T ss_pred CCCeEEEEeCCCCCCHHHHHHHHHHHHcCcCCCCCCCCCCCcceEEeccC---C--CcCCHHHHHHHHHHhccCCcccCC
Confidence 45567899999999999999999988622 1 1222200 0 01123456666665532 24
Q ss_pred CeEEEEcCcchhhhhcCCcccccchhHHHHHHHHHHHHhcCCCCCCcEEEEEecCCCCCCChhhhCCCCcceEEEecCCC
Q 007575 425 PSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATNRSDVLDPALRRPGRFDRVVMVETPD 504 (597)
Q Consensus 425 P~ILfIDEIDaL~~~r~~~~~~~~~~e~eqtLnqLL~emdg~~~~~~VIVIaaTNrpd~LD~aLlRpgRFd~~I~v~~Pd 504 (597)
..|++||++|.+. .+..|.||..|+. ++..+++|..|+.++.+-+.+++ |.. ++.+.+|+
T Consensus 91 ~KvvII~~~e~m~---------------~~a~NaLLK~LEE--Pp~~t~~il~~~~~~kll~TI~S--Rc~-~~~f~~l~ 150 (299)
T PRK07132 91 KKILIIKNIEKTS---------------NSLLNALLKTIEE--PPKDTYFLLTTKNINKVLPTIVS--RCQ-VFNVKEPD 150 (299)
T ss_pred ceEEEEecccccC---------------HHHHHHHHHHhhC--CCCCeEEEEEeCChHhChHHHHh--CeE-EEECCCCC
Confidence 5699999998874 2345889999985 44556666677778899999988 664 78999998
Q ss_pred HHHHHHHHHH
Q 007575 505 KIGREAILKV 514 (597)
Q Consensus 505 ~~eR~eILk~ 514 (597)
.++..+.|..
T Consensus 151 ~~~l~~~l~~ 160 (299)
T PRK07132 151 QQKILAKLLS 160 (299)
T ss_pred HHHHHHHHHH
Confidence 8877766654
No 263
>KOG0481 consensus DNA replication licensing factor, MCM5 component [Replication, recombination and repair]
Probab=98.00 E-value=3.5e-05 Score=84.59 Aligned_cols=234 Identities=23% Similarity=0.280 Sum_probs=129.6
Q ss_pred cccCChHHHHHHHHHHHHhcChhHHhhcCCCCCCceEEeCCCCChHHHHHHHHHHhcCCCeeee-chhhhHHHHhhcchH
Q 007575 333 DVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISC-SASEFVELYVGMGAS 411 (597)
Q Consensus 333 dV~G~de~k~~L~eiv~~l~~p~~~~~lg~~~p~gVLL~GPPGTGKT~LArAIA~el~~pfi~i-s~sef~~~~vG~~e~ 411 (597)
.+.|.+++|+.+.-++---.....=..+..+.--+|||-|.|||.|+.|.|-+-.-+.+-++.- .++. -.|.+++
T Consensus 332 SIfG~~DiKkAiaClLFgGsrK~LpDg~~lRGDINVLLLGDPgtAKSQlLKFvEkvsPIaVYTSGKGSS----AAGLTAS 407 (729)
T KOG0481|consen 332 SIFGHEDIKKAIACLLFGGSRKRLPDGVTLRGDINVLLLGDPGTAKSQLLKFVEKVSPIAVYTSGKGSS----AAGLTAS 407 (729)
T ss_pred hhcCchhHHHHHHHHhhcCccccCCCcceeccceeEEEecCCchhHHHHHHHHHhcCceEEEecCCCcc----cccceee
Confidence 4677777777665544221100000011223345799999999999999999977654443321 1110 0111111
Q ss_pred HHHH-----HHHHHH---hcCCeEEEEcCcchhhhhcCCcccccchhHHHHHHHHHHHHhcCCC--CCCcEEEEEecCCC
Q 007575 412 RVRD-----LFARAK---KEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFD--SNSAVIVLGATNRS 481 (597)
Q Consensus 412 ~vr~-----lF~~A~---~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~eqtLnqLL~emdg~~--~~~~VIVIaaTNrp 481 (597)
.+|+ .+-+-- -....|++|||+|.+-... +...|+..+|.--.+-.. |+. -+.+.-|+||.|.+
T Consensus 408 V~RD~~tReFylEGGAMVLADgGVvCIDEFDKMre~D----RVAIHEAMEQQTISIAKA--GITT~LNSRtSVLAAANpv 481 (729)
T KOG0481|consen 408 VIRDPSTREFYLEGGAMVLADGGVVCIDEFDKMREDD----RVAIHEAMEQQTISIAKA--GITTTLNSRTSVLAAANPV 481 (729)
T ss_pred EEecCCcceEEEecceEEEecCCEEEeehhhccCchh----hhHHHHHHHhhhHHHhhh--cceeeecchhhhhhhcCCc
Confidence 1111 000000 0112399999999985432 345566666543322221 222 24566788888874
Q ss_pred -----------CCC--ChhhhCCCCcceEEEecCCCHHHH-----HHHHHHHHhcCCCCCCC------CCCHHHHHHh--
Q 007575 482 -----------DVL--DPALRRPGRFDRVVMVETPDKIGR-----EAILKVHVSKKELPLAK------DIDLGDIASM-- 535 (597)
Q Consensus 482 -----------d~L--D~aLlRpgRFd~~I~v~~Pd~~eR-----~eILk~~l~~~~~~l~~------dvdl~~LA~~-- 535 (597)
+.+ -+.+++ |||..+-+.--..++| ..++..|..+.+..-.+ .+.++.+-+.
T Consensus 482 fGRyDd~Kt~~dNIDf~~TILS--RFDmIFIVKD~h~~~~D~~lAkHVI~vH~~~~n~~~~~~~~~~~ei~~~~~KryI~ 559 (729)
T KOG0481|consen 482 FGRYDDTKTGEDNIDFMPTILS--RFDMIFIVKDEHDEERDITLAKHVINVHVSKANAQTDSQEENEGEIPIEKLKRYIQ 559 (729)
T ss_pred cccccccCCcccccchhhhHhh--hccEEEEEeccCcchhhhHHHHHhhhhhccccccccCccccCCCcccHHHHHHHHH
Confidence 233 478888 9999888875443333 34555555422111111 1122111110
Q ss_pred ----------------------------------------CCCCCHHHHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHH
Q 007575 536 ----------------------------------------TTGFTGADLANLVNEAALLAGRLNKVVVEKIDFIHAVERS 575 (597)
Q Consensus 536 ----------------------------------------t~G~SgaDL~~Lv~eAal~A~r~~~~~It~~d~~~Al~~v 575 (597)
+-..+.++|+.+++-+-.+|..+-....|..|+++|+.-+
T Consensus 560 YcR~kc~PrLs~~AaekL~~~yV~~R~~~~q~e~~s~~rssIPITVRQLEAIiRI~ESLAKm~Ls~~ate~hV~EA~RLF 639 (729)
T KOG0481|consen 560 YCRLKCGPRLSAEAAEKLSSRYVTMRKGVRQHEQDSDKRSSIPITVRQLEAIIRIAESLAKMELSPFATEAHVEEALRLF 639 (729)
T ss_pred HHHhccCCCCCHHHHHHHHHHHhHHHHHHHHhhhcccccCCCceeHHHHHHHHHHHHHHHhhcCCccccHHHHHHHHHHH
Confidence 1124558999999999999999989999999999998876
Q ss_pred hcc
Q 007575 576 IAV 578 (597)
Q Consensus 576 ~~g 578 (597)
...
T Consensus 640 ~vS 642 (729)
T KOG0481|consen 640 QVS 642 (729)
T ss_pred hHh
Confidence 543
No 264
>KOG0477 consensus DNA replication licensing factor, MCM2 component [Replication, recombination and repair]
Probab=97.98 E-value=2.1e-05 Score=87.87 Aligned_cols=228 Identities=21% Similarity=0.271 Sum_probs=127.5
Q ss_pred cccCChHHHHHHHHHHHH--hcChhHHhhcCCCCCCceEEeCCCCChHHHHHHHHHHhcCCCeeeechhhhHHHHhhcch
Q 007575 333 DVAGVDEAKEELEEIVEF--LRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFVELYVGMGA 410 (597)
Q Consensus 333 dV~G~de~k~~L~eiv~~--l~~p~~~~~lg~~~p~gVLL~GPPGTGKT~LArAIA~el~~pfi~is~sef~~~~vG~~e 410 (597)
.|.|++++|..+.-.+-- -+++.. ....+.--+|||+|.|||||+.+.|.+++-....++..--. ...+|.++
T Consensus 450 sIyGh~~VK~AvAlaLfGGv~kn~~~--khkvRGDinvLL~GDPGTaKSQFLKY~eK~s~RAV~tTGqG---ASavGLTa 524 (854)
T KOG0477|consen 450 SIYGHEDVKRAVALALFGGVPKNPGG--KHKVRGDINVLLLGDPGTAKSQFLKYAEKTSPRAVFTTGQG---ASAVGLTA 524 (854)
T ss_pred hhhchHHHHHHHHHHHhcCCccCCCC--CceeccceeEEEecCCCccHHHHHHHHHhcCcceeEeccCC---ccccceeE
Confidence 467888887776654432 222211 11233445799999999999999999999877666653211 01122221
Q ss_pred HHH-----HHHHHHHHh---cCCeEEEEcCcchhhhhcCCcccccchhHHHHHHHH-----HHHHhcCCCCCCcEEEEEe
Q 007575 411 SRV-----RDLFARAKK---EAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQ-----LLTEMDGFDSNSAVIVLGA 477 (597)
Q Consensus 411 ~~v-----r~lF~~A~~---~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~eqtLnq-----LL~emdg~~~~~~VIVIaa 477 (597)
... +++--++.. ....|.+|||+|.+-... +...|+..+|.--. +.+.+ ...+.||||
T Consensus 525 ~v~KdPvtrEWTLEaGALVLADkGvClIDEFDKMndqD----RtSIHEAMEQQSISISKAGIVtsL-----qArctvIAA 595 (854)
T KOG0477|consen 525 YVRKDPVTREWTLEAGALVLADKGVCLIDEFDKMNDQD----RTSIHEAMEQQSISISKAGIVTSL-----QARCTVIAA 595 (854)
T ss_pred EEeeCCccceeeeccCeEEEccCceEEeehhhhhcccc----cchHHHHHHhcchhhhhhhHHHHH-----Hhhhhhhee
Confidence 111 112111111 112389999999986432 23455555553211 22222 245678999
Q ss_pred cCCC-----------C--CCChhhhCCCCcceEEEecC---CCHHHHH--HHHHHHHhcCC-------------------
Q 007575 478 TNRS-----------D--VLDPALRRPGRFDRVVMVET---PDKIGRE--AILKVHVSKKE------------------- 520 (597)
Q Consensus 478 TNrp-----------d--~LD~aLlRpgRFd~~I~v~~---Pd~~eR~--eILk~~l~~~~------------------- 520 (597)
+|.. + .|-..+++ |||....+.- |-.+++. -++..|.+...
T Consensus 596 anPigGRY~~s~tFaqNV~ltePIlS--RFDiLcVvkD~vd~~~De~lA~fVV~Sh~r~hp~~~~~~~~~e~~~~~~v~~ 673 (854)
T KOG0477|consen 596 ANPIGGRYNPSLTFAQNVDLTEPILS--RFDILCVVKDTVDPVQDEKLAKFVVGSHVRHHPSNKEEDGLEEPQMPARVEP 673 (854)
T ss_pred cCCCCCccCCccchhhccccccchhh--hcceeeeeecccCchhHHHHHHHHHHhHhhcCCcccccCccccccccccccc
Confidence 9872 1 34566777 8997766653 3333332 23333433210
Q ss_pred -----------------CCCCCCCCHHHHHHhC---------CC---CCHHHHHHHHHHHHHHHHhcCCCcccHHHHHHH
Q 007575 521 -----------------LPLAKDIDLGDIASMT---------TG---FTGADLANLVNEAALLAGRLNKVVVEKIDFIHA 571 (597)
Q Consensus 521 -----------------~~l~~dvdl~~LA~~t---------~G---~SgaDL~~Lv~eAal~A~r~~~~~It~~d~~~A 571 (597)
.|--.+.|.+.++... .| .+-+-|+.++.-+...|...-...|+.+|+..|
T Consensus 674 ipq~lLrkyI~yar~~v~PkL~q~d~~K~s~vya~lRkES~~tGs~piTvRHieS~ir~seAhArm~Lr~~V~~~d~~~A 753 (854)
T KOG0477|consen 674 IPQELLRKYIIYAREKVRPKLNQMDMDKISSVYADLRKESMATGSLPITVRHIESMIRMSEAHARMHLREYVTEEDVDMA 753 (854)
T ss_pred ChHHHHHHHHHHHHHhcccccccccHHHHHHHHHHHHhhccccCCchhhHHHHHHHHHHHHHHHHHHHHhhccHhHHHHH
Confidence 0111122333333211 12 245788999998888888888899999999988
Q ss_pred HHHHh
Q 007575 572 VERSI 576 (597)
Q Consensus 572 l~~v~ 576 (597)
+.-++
T Consensus 754 I~v~l 758 (854)
T KOG0477|consen 754 IRVML 758 (854)
T ss_pred HHHHH
Confidence 76654
No 265
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=97.96 E-value=1.4e-05 Score=76.16 Aligned_cols=59 Identities=29% Similarity=0.465 Sum_probs=34.9
Q ss_pred ccCChHHHHHHHHHHHHhcChhHHhhcCCCCCCceEEeCCCCChHHHHHHHHHHhcCCC---eeeechhhh
Q 007575 334 VAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVP---FISCSASEF 401 (597)
Q Consensus 334 V~G~de~k~~L~eiv~~l~~p~~~~~lg~~~p~gVLL~GPPGTGKT~LArAIA~el~~p---fi~is~sef 401 (597)
++|-++..++|...++ .. ....++.++|+|++|+|||+|++++...+..+ ++.+++...
T Consensus 2 fvgR~~e~~~l~~~l~-~~--------~~~~~~~~ll~G~~G~GKT~ll~~~~~~~~~~~~~~~~~~~~~~ 63 (185)
T PF13191_consen 2 FVGREEEIERLRDLLD-AA--------QSGSPRNLLLTGESGSGKTSLLRALLDRLAERGGYVISINCDDS 63 (185)
T ss_dssp -TT-HHHHHHHHHTTG-GT--------SS-----EEE-B-TTSSHHHHHHHHHHHHHHHT--EEEEEEETT
T ss_pred CCCHHHHHHHHHHHHH-HH--------HcCCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCEEEEEEEecc
Confidence 5788887777666664 11 12346789999999999999999987765322 666655544
No 266
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=97.95 E-value=6.8e-05 Score=71.98 Aligned_cols=71 Identities=25% Similarity=0.271 Sum_probs=44.9
Q ss_pred eEEeCCCCChHHHHHHHHHHhc---CCCeeeechhhhHHHH------hhc-----------------------chH----
Q 007575 368 VLLVGLPGTGKTLLAKAVAGEA---EVPFISCSASEFVELY------VGM-----------------------GAS---- 411 (597)
Q Consensus 368 VLL~GPPGTGKT~LArAIA~el---~~pfi~is~sef~~~~------vG~-----------------------~e~---- 411 (597)
+||+||||||||+++..++.+. |.++++++..+-.+.+ .|. +..
T Consensus 2 ~li~G~~G~GKT~l~~~~~~~~~~~g~~v~~~s~e~~~~~~~~~~~~~g~~~~~l~~~g~l~~~d~~~~~~s~~~~~~~~ 81 (187)
T cd01124 2 TLLSGGPGTGKTTFALQFLYAGLARGEPGLYVTLEESPEELIENAESLGWDLERLEDEGLLAIVDADPDEIGPAESSLRL 81 (187)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHCCCcEEEEECCCCHHHHHHHHHHcCCChHHHHhcCCeEEEecCccccchhhhhhhH
Confidence 7899999999999999886643 6666666543221110 010 000
Q ss_pred -HHHHHHHHHHhcCCeEEEEcCcchhhh
Q 007575 412 -RVRDLFARAKKEAPSIIFIDEIDAVAK 438 (597)
Q Consensus 412 -~vr~lF~~A~~~aP~ILfIDEIDaL~~ 438 (597)
....+...+....|.+|+|||+..+..
T Consensus 82 ~~~~~i~~~~~~~~~~~lviD~~~~~~~ 109 (187)
T cd01124 82 ELIQRLKDAIEEFKAKRVVIDSVSGLLL 109 (187)
T ss_pred HHHHHHHHHHHHhCCCEEEEeCcHHHhh
Confidence 123344444566789999999988753
No 267
>KOG1051 consensus Chaperone HSP104 and related ATP-dependent Clp proteases [Posttranslational modification, protein turnover, chaperones]
Probab=97.93 E-value=5.8e-05 Score=88.73 Aligned_cols=178 Identities=24% Similarity=0.318 Sum_probs=117.0
Q ss_pred CceEEeCCCCChHHHHHHHHHHhc----------CCCeeeechhhhH--HHHhhcchHHHHHHHHHHHh-cCCeEEEEcC
Q 007575 366 RGVLLVGLPGTGKTLLAKAVAGEA----------EVPFISCSASEFV--ELYVGMGASRVRDLFARAKK-EAPSIIFIDE 432 (597)
Q Consensus 366 ~gVLL~GPPGTGKT~LArAIA~el----------~~pfi~is~sef~--~~~vG~~e~~vr~lF~~A~~-~aP~ILfIDE 432 (597)
++-+|+|.||+|||.++.-+|+.. +..++.++...++ .++.|+.+.+++++.+++.. +..-||||||
T Consensus 209 ~NPvLVG~~gvgktaiv~gla~ri~~G~vp~~l~~~~l~~l~~g~l~aGa~~rge~E~rlk~l~k~v~~~~~gvILfige 288 (898)
T KOG1051|consen 209 NNPVLVGEPGVGKTAIVEGLAQRIATGDVPETLKDKKLIALDFGSLVAGAKRRGEFEERLKELLKEVESGGGGVILFLGE 288 (898)
T ss_pred CCceEEecCCCCchhHHHHHHHHhhcCCCCccccccceEEEEhhhcccCcccchHHHHHHHHHHHHHhcCCCcEEEEecc
Confidence 578999999999999999999864 3455666655332 34678888999999999884 4556899999
Q ss_pred cchhhhhcCCcccccchhHHHHHHHHHHHHhcCCCCCCcEEEEEecCCCC-----CCChhhhCCCCcceEEEecCCCHHH
Q 007575 433 IDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATNRSD-----VLDPALRRPGRFDRVVMVETPDKIG 507 (597)
Q Consensus 433 IDaL~~~r~~~~~~~~~~e~eqtLnqLL~emdg~~~~~~VIVIaaTNrpd-----~LD~aLlRpgRFd~~I~v~~Pd~~e 507 (597)
++-+...... .......|-|...+. ..++-+|+||.... .=||++-| ||+ .+.++.|+...
T Consensus 289 lh~lvg~g~~-------~~~~d~~nlLkp~L~----rg~l~~IGatT~e~Y~k~iekdPalEr--rw~-l~~v~~pS~~~ 354 (898)
T KOG1051|consen 289 LHWLVGSGSN-------YGAIDAANLLKPLLA----RGGLWCIGATTLETYRKCIEKDPALER--RWQ-LVLVPIPSVEN 354 (898)
T ss_pred eeeeecCCCc-------chHHHHHHhhHHHHh----cCCeEEEecccHHHHHHHHhhCcchhh--Ccc-eeEeccCcccc
Confidence 9998765432 112334444443332 33488888776321 34899999 998 77899999877
Q ss_pred HHHHHHHHHhcCCCC----CCC--CCCHHHHH--HhCCCCCHHHHHHHHHHHHHHHHh
Q 007575 508 REAILKVHVSKKELP----LAK--DIDLGDIA--SMTTGFTGADLANLVNEAALLAGR 557 (597)
Q Consensus 508 R~eILk~~l~~~~~~----l~~--dvdl~~LA--~~t~G~SgaDL~~Lv~eAal~A~r 557 (597)
...||.......... ..+ .+....++ ..+..+.+.-...++++|+.....
T Consensus 355 ~~~iL~~l~~~~e~~hg~~~s~~a~~~a~~~s~~~~t~r~lpd~aidl~dEa~a~~~~ 412 (898)
T KOG1051|consen 355 LSLILPGLSERYEVHHGVRISDESLFSAAQLSARYITLSFLPDCAIDLEDEAAALVKS 412 (898)
T ss_pred hhhhhhhhhhhhccccCCcccccccccccchhhhhcccCcCchhcccHHHHHHHHHhh
Confidence 777777655442111 111 11112222 234456667778888888776544
No 268
>TIGR01618 phage_P_loop phage nucleotide-binding protein. This model represents an uncharacterized family of proteins from a number of phage of Gram-positive bacteria. This protein contains a P-loop motif, G/A-X-X-G-X-G-K-T near its amino end. The function of this protein is unknown.
Probab=97.92 E-value=2e-05 Score=79.49 Aligned_cols=73 Identities=25% Similarity=0.275 Sum_probs=41.8
Q ss_pred CCCceEEeCCCCChHHHHHHHHHHhcCCCeeeechhh----------hHHHHhhcchHHHHHHHHHHHh--cCCeEEEEc
Q 007575 364 PPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASE----------FVELYVGMGASRVRDLFARAKK--EAPSIIFID 431 (597)
Q Consensus 364 ~p~gVLL~GPPGTGKT~LArAIA~el~~pfi~is~se----------f~~~~vG~~e~~vr~lF~~A~~--~aP~ILfID 431 (597)
.|..+||||+||+|||++|+.+++. ..++..+++. .+..-.......+.+.+..+.. ....+|+||
T Consensus 11 ~~~~~liyG~~G~GKtt~a~~~~~~--~~~~~~d~~~~~l~g~~~~~v~~~d~~~~~~~~~d~l~~~~~~~~~ydtVVID 88 (220)
T TIGR01618 11 IPNMYLIYGKPGTGKTSTIKYLPGK--TLVLSFDMSSKVLIGDENVDIADHDDMPPIQAMVEFYVMQNIQAVKYDNIVID 88 (220)
T ss_pred CCcEEEEECCCCCCHHHHHHhcCCC--CEEEeccccchhccCCCCCceeecCCCCCHHHHHHHHHHHHhccccCCEEEEe
Confidence 3667999999999999999999743 2222222211 0000001112233333333322 335799999
Q ss_pred Ccchhhh
Q 007575 432 EIDAVAK 438 (597)
Q Consensus 432 EIDaL~~ 438 (597)
+|+.+..
T Consensus 89 sI~~l~~ 95 (220)
T TIGR01618 89 NISALQN 95 (220)
T ss_pred cHHHHHH
Confidence 9999865
No 269
>PF12774 AAA_6: Hydrolytic ATP binding site of dynein motor region D1; PDB: 3VKH_A 3VKG_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A.
Probab=97.88 E-value=0.00014 Score=73.98 Aligned_cols=129 Identities=19% Similarity=0.192 Sum_probs=73.3
Q ss_pred CceEEeCCCCChHHHHHHHHHHhcCCCeeeechhhhHHHHhhcchHHHHHHHHHHHhcCCeEEEEcCcchhhhhcCCccc
Q 007575 366 RGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFVELYVGMGASRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFR 445 (597)
Q Consensus 366 ~gVLL~GPPGTGKT~LArAIA~el~~pfi~is~sef~~~~vG~~e~~vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~ 445 (597)
.+..++||+|||||.++|++|.-+|.+++.++|++-.+ .+.+.++|.-+... -+-+.+||++.|-..-
T Consensus 33 ~~~~~~GpagtGKtetik~La~~lG~~~~vfnc~~~~~------~~~l~ril~G~~~~-GaW~cfdefnrl~~~v----- 100 (231)
T PF12774_consen 33 LGGALSGPAGTGKTETIKDLARALGRFVVVFNCSEQMD------YQSLSRILKGLAQS-GAWLCFDEFNRLSEEV----- 100 (231)
T ss_dssp TEEEEESSTTSSHHHHHHHHHHCTT--EEEEETTSSS-------HHHHHHHHHHHHHH-T-EEEEETCCCSSHHH-----
T ss_pred CCCCCcCCCCCCchhHHHHHHHHhCCeEEEeccccccc------HHHHHHHHHHHhhc-CchhhhhhhhhhhHHH-----
Confidence 46789999999999999999999999999999987543 45566677655443 3589999999875321
Q ss_pred ccchhHHHHHHHHHHHHhcCCCC-----------CCcEEEEEecCCC----CCCChhhhCCCCcceEEEecCCCHHHHHH
Q 007575 446 IVSNDEREQTLNQLLTEMDGFDS-----------NSAVIVLGATNRS----DVLDPALRRPGRFDRVVMVETPDKIGREA 510 (597)
Q Consensus 446 ~~~~~e~eqtLnqLL~emdg~~~-----------~~~VIVIaaTNrp----d~LD~aLlRpgRFd~~I~v~~Pd~~eR~e 510 (597)
-....+.+..+...+..-.. +..+-++.|.|.. ..|++.|+. +-|.|.+..||.....+
T Consensus 101 ---LS~i~~~i~~i~~al~~~~~~~~~~g~~i~l~~~~~iFiT~np~y~gr~~LP~nLk~---lFRpvam~~PD~~~I~e 174 (231)
T PF12774_consen 101 ---LSVISQQIQSIQDALRAKQKSFTLEGQEIKLNPNCGIFITMNPGYAGRSELPENLKA---LFRPVAMMVPDLSLIAE 174 (231)
T ss_dssp ---HHHHHHHHHHHHHHHHCTSSEEEETTCEEE--TT-EEEEEE-B-CCCC--S-HHHCT---TEEEEE--S--HHHHHH
T ss_pred ---HHHHHHHHHHHHHhhcccccccccCCCEEEEccceeEEEeeccccCCcccCCHhHHH---HhheeEEeCCCHHHHHH
Confidence 11112222333322221110 1123344455532 568888876 44789999998765555
Q ss_pred HH
Q 007575 511 IL 512 (597)
Q Consensus 511 IL 512 (597)
++
T Consensus 175 i~ 176 (231)
T PF12774_consen 175 IL 176 (231)
T ss_dssp HH
T ss_pred HH
Confidence 44
No 270
>KOG1968 consensus Replication factor C, subunit RFC1 (large subunit) [Replication, recombination and repair]
Probab=97.87 E-value=1.5e-05 Score=93.86 Aligned_cols=205 Identities=15% Similarity=0.218 Sum_probs=123.1
Q ss_pred CCcccccccCChHHHHHHHHHHHHhcCh--hHHhhcCCCC-CC-ceEEeCCCCChHHHHHHHHHHhcCCCeeeechhhhH
Q 007575 327 DTITFADVAGVDEAKEELEEIVEFLRSP--DKYIRLGARP-PR-GVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFV 402 (597)
Q Consensus 327 ~~vtf~dV~G~de~k~~L~eiv~~l~~p--~~~~~lg~~~-p~-gVLL~GPPGTGKT~LArAIA~el~~pfi~is~sef~ 402 (597)
.+....++.|.......+.+-++-.+++ ..|...+... .. .+|++||||.|||+.|.++|.+++..++..+.++..
T Consensus 315 ~p~~~k~~~~~~~~~~~~~~~l~~~k~~~~~sy~~~~~~ss~~~~~l~~G~pGigKT~~~h~~~k~~g~~v~E~Nas~~R 394 (871)
T KOG1968|consen 315 QPTSSKALEGNASSSKKASKWLAKSKDKEKSSYKENEPDSSKKKALLLSGPPGIGKTTAAHKAAKELGFKVVEKNASDVR 394 (871)
T ss_pred ccccHHhhhcccchhhhhhhHHHhhhccccccccccCcchhhHHHHHhcCCCCCCchhhHhhhhhhcccceeecCccccc
Confidence 3445566777666555444433332222 1121111111 12 379999999999999999999999999999988654
Q ss_pred HHHh-----hc--chHHHHHHHH---HHHh-cCC-eEEEEcCcchhhhhcCCcccccchhHHHHHHHHHHHHhcCCCCCC
Q 007575 403 ELYV-----GM--GASRVRDLFA---RAKK-EAP-SIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNS 470 (597)
Q Consensus 403 ~~~v-----G~--~e~~vr~lF~---~A~~-~aP-~ILfIDEIDaL~~~r~~~~~~~~~~e~eqtLnqLL~emdg~~~~~ 470 (597)
+... |. +...+...|. .... ... -||++||+|.+... . +..+.++...+. ..
T Consensus 395 Sk~~l~~~~~~~~~s~si~~~~~~~~~~~~~~~~~~vil~devD~~~~~-d-----------Rg~v~~l~~l~~----ks 458 (871)
T KOG1968|consen 395 SKKELLNKLGNATSSHSIKGSKKKKGNRQSLNSDHFLILMDEVDGMFGE-D-----------RGGVSKLSSLCK----KS 458 (871)
T ss_pred cccHHHhhhhccccccchhhhhcccccccccccceeEEEEeccccccch-h-----------hhhHHHHHHHHH----hc
Confidence 3321 11 1122333330 0000 112 29999999998751 1 111223322222 23
Q ss_pred cEEEEEecCCCCCCChhhhCCCCcceEEEecCCCHHHHHHHHHHHHhcCCCCCCCCCCHHHHHHhCCCCCHHHHHHHHHH
Q 007575 471 AVIVLGATNRSDVLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTTGFTGADLANLVNE 550 (597)
Q Consensus 471 ~VIVIaaTNrpd~LD~aLlRpgRFd~~I~v~~Pd~~eR~eILk~~l~~~~~~l~~dvdl~~LA~~t~G~SgaDL~~Lv~e 550 (597)
.+-||+++|..+......+. |-+..++|..|+...+..-+...+....+.+.++ .++.+...+ ++||++.+..
T Consensus 459 ~~Piv~~cndr~~p~sr~~~--~~~~~l~f~kP~~~~i~~ri~si~~se~~ki~~~-~l~~~s~~~----~~DiR~~i~~ 531 (871)
T KOG1968|consen 459 SRPLVCTCNDRNLPKSRALS--RACSDLRFSKPSSELIRSRIMSICKSEGIKISDD-VLEEISKLS----GGDIRQIIMQ 531 (871)
T ss_pred cCCeEEEecCCCCccccchh--hhcceeeecCCcHHHHHhhhhhhhcccceecCcH-HHHHHHHhc----ccCHHHHHHH
Confidence 34567777776655543333 4445699999999999988888877777777666 477887766 5688888877
Q ss_pred HHHH
Q 007575 551 AALL 554 (597)
Q Consensus 551 Aal~ 554 (597)
..+.
T Consensus 532 lq~~ 535 (871)
T KOG1968|consen 532 LQFW 535 (871)
T ss_pred Hhhh
Confidence 6665
No 271
>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5). All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity
Probab=97.86 E-value=4.1e-05 Score=68.20 Aligned_cols=23 Identities=39% Similarity=0.629 Sum_probs=20.4
Q ss_pred eEEeCCCCChHHHHHHHHHHhcC
Q 007575 368 VLLVGLPGTGKTLLAKAVAGEAE 390 (597)
Q Consensus 368 VLL~GPPGTGKT~LArAIA~el~ 390 (597)
|.|+||||+|||++|+.++..+.
T Consensus 1 I~i~G~~G~GKS~l~~~l~~~l~ 23 (107)
T PF00910_consen 1 IWIYGPPGIGKSTLAKELAKDLL 23 (107)
T ss_pred CEEECCCCCCHHHHHHHHHHHHH
Confidence 68999999999999999987653
No 272
>COG1485 Predicted ATPase [General function prediction only]
Probab=97.86 E-value=8.2e-05 Score=79.02 Aligned_cols=130 Identities=21% Similarity=0.260 Sum_probs=73.5
Q ss_pred ChHHHHHHHHHHHHhcChhHH----hhc---CCCCCCceEEeCCCCChHHHHHHHHHHhcCCCe-eeechhhhHHH----
Q 007575 337 VDEAKEELEEIVEFLRSPDKY----IRL---GARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPF-ISCSASEFVEL---- 404 (597)
Q Consensus 337 ~de~k~~L~eiv~~l~~p~~~----~~l---g~~~p~gVLL~GPPGTGKT~LArAIA~el~~pf-i~is~sef~~~---- 404 (597)
+..+.+.|..+.+.+..+..- ..+ ...+++|+.|+|+-|.|||+|.-.....+..+- ..++--.|+-.
T Consensus 30 Q~~a~~~Ldrl~~~~~~~~~~~~~l~~lf~r~~~~~~GlYl~GgVGrGKT~LMD~Fy~~lp~~~k~R~HFh~FM~~vH~~ 109 (367)
T COG1485 30 QPAAAAALDRLYDELVAPRSARKALGWLFGRDHGPVRGLYLWGGVGRGKTMLMDLFYESLPGERKRRLHFHRFMARVHQR 109 (367)
T ss_pred HHHHHHHHHHHHHHhhcccccccccccccccCCCCCceEEEECCCCccHHHHHHHHHhhCCccccccccHHHHHHHHHHH
Confidence 455566666666643222111 112 234789999999999999999999988775432 22332233221
Q ss_pred ---HhhcchHHHHHHHHHHHhcCCeEEEEcCcchhhhhcCCcccccchhHHHHHHHHHHHHhcCCCCCCcEEEEEecCCC
Q 007575 405 ---YVGMGASRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATNRS 481 (597)
Q Consensus 405 ---~vG~~e~~vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~eqtLnqLL~emdg~~~~~~VIVIaaTNrp 481 (597)
..|+. .-+..+-.+..+. -.||+|||++-= +-...-.+..|+.+|= ..+|++++|+|.+
T Consensus 110 l~~l~g~~-dpl~~iA~~~~~~-~~vLCfDEF~Vt------------DI~DAMiL~rL~~~Lf----~~GV~lvaTSN~~ 171 (367)
T COG1485 110 LHTLQGQT-DPLPPIADELAAE-TRVLCFDEFEVT------------DIADAMILGRLLEALF----ARGVVLVATSNTA 171 (367)
T ss_pred HHHHcCCC-CccHHHHHHHHhc-CCEEEeeeeeec------------ChHHHHHHHHHHHHHH----HCCcEEEEeCCCC
Confidence 22332 1122222222222 249999998531 1112345677777764 3579999999985
Q ss_pred -CCC
Q 007575 482 -DVL 484 (597)
Q Consensus 482 -d~L 484 (597)
+.|
T Consensus 172 P~~L 175 (367)
T COG1485 172 PDNL 175 (367)
T ss_pred hHHh
Confidence 443
No 273
>PRK09361 radB DNA repair and recombination protein RadB; Provisional
Probab=97.84 E-value=7.1e-05 Score=74.76 Aligned_cols=78 Identities=23% Similarity=0.266 Sum_probs=49.1
Q ss_pred CCCCCCceEEeCCCCChHHHHHHHHHHhc---CCCeeeechhhh----HHHHhhc-------------------chHHHH
Q 007575 361 GARPPRGVLLVGLPGTGKTLLAKAVAGEA---EVPFISCSASEF----VELYVGM-------------------GASRVR 414 (597)
Q Consensus 361 g~~~p~gVLL~GPPGTGKT~LArAIA~el---~~pfi~is~sef----~~~~vG~-------------------~e~~vr 414 (597)
|.+...-++|+||||+|||++|..+|.+. +.+++++++..+ .....+. ....++
T Consensus 19 Gi~~g~i~~i~G~~GsGKT~l~~~la~~~~~~~~~v~yi~~e~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 98 (225)
T PRK09361 19 GFERGTITQIYGPPGSGKTNICLQLAVEAAKNGKKVIYIDTEGLSPERFKQIAGEDFEELLSNIIIFEPSSFEEQSEAIR 98 (225)
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEECCCCCHHHHHHHHhhChHhHhhCeEEEeCCCHHHHHHHHH
Confidence 55566678999999999999999998743 667777766522 1111110 001112
Q ss_pred HHHHHHHhcCCeEEEEcCcchhhhh
Q 007575 415 DLFARAKKEAPSIIFIDEIDAVAKS 439 (597)
Q Consensus 415 ~lF~~A~~~aP~ILfIDEIDaL~~~ 439 (597)
.+..... ..+++|+||-+.++...
T Consensus 99 ~~~~~~~-~~~~lvVIDsi~al~~~ 122 (225)
T PRK09361 99 KAEKLAK-ENVGLIVLDSATSLYRL 122 (225)
T ss_pred HHHHHHH-hcccEEEEeCcHHHhHH
Confidence 2222222 57889999999998754
No 274
>PRK11823 DNA repair protein RadA; Provisional
Probab=97.82 E-value=9.2e-05 Score=82.07 Aligned_cols=103 Identities=22% Similarity=0.292 Sum_probs=66.4
Q ss_pred CCCCCCceEEeCCCCChHHHHHHHHHHhc---CCCeeeechhhhHHHHh------hc--------chHHHHHHHHHHHhc
Q 007575 361 GARPPRGVLLVGLPGTGKTLLAKAVAGEA---EVPFISCSASEFVELYV------GM--------GASRVRDLFARAKKE 423 (597)
Q Consensus 361 g~~~p~gVLL~GPPGTGKT~LArAIA~el---~~pfi~is~sef~~~~v------G~--------~e~~vr~lF~~A~~~ 423 (597)
|..+..-+||+||||+|||+|+..++... +.++++++..+-.+... |. .+..+.++++.....
T Consensus 76 Gi~~Gs~~lI~G~pG~GKTtL~lq~a~~~a~~g~~vlYvs~Ees~~qi~~ra~rlg~~~~~l~~~~e~~l~~i~~~i~~~ 155 (446)
T PRK11823 76 GLVPGSVVLIGGDPGIGKSTLLLQVAARLAAAGGKVLYVSGEESASQIKLRAERLGLPSDNLYLLAETNLEAILATIEEE 155 (446)
T ss_pred CccCCEEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEccccHHHHHHHHHHcCCChhcEEEeCCCCHHHHHHHHHhh
Confidence 55566678999999999999999998754 66778887665443321 11 123456677777777
Q ss_pred CCeEEEEcCcchhhhhcCCcccccchhHHHHHHHHHHHHhc
Q 007575 424 APSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMD 464 (597)
Q Consensus 424 aP~ILfIDEIDaL~~~r~~~~~~~~~~e~eqtLnqLL~emd 464 (597)
.|.+|+||+|..+....-.+ ..+.....++.+++|.....
T Consensus 156 ~~~lVVIDSIq~l~~~~~~~-~~g~~~qvr~~~~~L~~~ak 195 (446)
T PRK11823 156 KPDLVVIDSIQTMYSPELES-APGSVSQVRECAAELMRLAK 195 (446)
T ss_pred CCCEEEEechhhhccccccC-CCCCHHHHHHHHHHHHHHHH
Confidence 89999999999986532111 11222333444555555443
No 275
>PHA00729 NTP-binding motif containing protein
Probab=97.81 E-value=5.1e-05 Score=76.64 Aligned_cols=24 Identities=33% Similarity=0.448 Sum_probs=22.6
Q ss_pred ceEEeCCCCChHHHHHHHHHHhcC
Q 007575 367 GVLLVGLPGTGKTLLAKAVAGEAE 390 (597)
Q Consensus 367 gVLL~GPPGTGKT~LArAIA~el~ 390 (597)
+++|+|+||||||+||.+++.+++
T Consensus 19 nIlItG~pGvGKT~LA~aLa~~l~ 42 (226)
T PHA00729 19 SAVIFGKQGSGKTTYALKVARDVF 42 (226)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 799999999999999999999875
No 276
>PRK00131 aroK shikimate kinase; Reviewed
Probab=97.79 E-value=6.9e-05 Score=70.84 Aligned_cols=41 Identities=22% Similarity=0.429 Sum_probs=33.4
Q ss_pred CCCCceEEeCCCCChHHHHHHHHHHhcCCCeeeechhhhHHHH
Q 007575 363 RPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFVELY 405 (597)
Q Consensus 363 ~~p~gVLL~GPPGTGKT~LArAIA~el~~pfi~is~sef~~~~ 405 (597)
.++..|+|+|+||||||++|+++|.+++.+|+.. +++....
T Consensus 2 ~~~~~i~l~G~~GsGKstla~~La~~l~~~~~d~--d~~~~~~ 42 (175)
T PRK00131 2 LKGPNIVLIGFMGAGKSTIGRLLAKRLGYDFIDT--DHLIEAR 42 (175)
T ss_pred CCCCeEEEEcCCCCCHHHHHHHHHHHhCCCEEEC--hHHHHHH
Confidence 3567899999999999999999999999998854 3444443
No 277
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=97.79 E-value=0.00011 Score=79.72 Aligned_cols=79 Identities=29% Similarity=0.434 Sum_probs=55.9
Q ss_pred CCCCCCceEEeCCCCChHHHHHHHHHHhc---CCCeeeechhhhHHHH------hhc--------chHHHHHHHHHHHhc
Q 007575 361 GARPPRGVLLVGLPGTGKTLLAKAVAGEA---EVPFISCSASEFVELY------VGM--------GASRVRDLFARAKKE 423 (597)
Q Consensus 361 g~~~p~gVLL~GPPGTGKT~LArAIA~el---~~pfi~is~sef~~~~------vG~--------~e~~vr~lF~~A~~~ 423 (597)
|..+..-+||+|+||+|||+|+..+|... +.++++++..+-.+.. .|. .+..+..+++.+...
T Consensus 78 Gi~~GslvLI~G~pG~GKStLllq~a~~~a~~g~~VlYvs~EEs~~qi~~Ra~rlg~~~~~l~l~~e~~le~I~~~i~~~ 157 (372)
T cd01121 78 GLVPGSVILIGGDPGIGKSTLLLQVAARLAKRGGKVLYVSGEESPEQIKLRADRLGISTENLYLLAETNLEDILASIEEL 157 (372)
T ss_pred CccCCeEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEECCcCHHHHHHHHHHcCCCcccEEEEccCcHHHHHHHHHhc
Confidence 45566678999999999999999998764 4577777655432221 111 123456677777778
Q ss_pred CCeEEEEcCcchhhhh
Q 007575 424 APSIIFIDEIDAVAKS 439 (597)
Q Consensus 424 aP~ILfIDEIDaL~~~ 439 (597)
.|.+|+||+|..+...
T Consensus 158 ~~~lVVIDSIq~l~~~ 173 (372)
T cd01121 158 KPDLVIIDSIQTVYSS 173 (372)
T ss_pred CCcEEEEcchHHhhcc
Confidence 8999999999998643
No 278
>TIGR02688 conserved hypothetical protein TIGR02688. Members of this family are uncharacterized proteins sporadically distributed in bacteria and archaea, about 470 amino acids in length. Several members of this family appear in public databases with annotation as ATP-dependent protease La, despite the lack of similarity to families TIGR00763 (ATP-dependent protease La) or pfam02190 (ATP-dependent protease La (LON) domain). This protein is repeatedly found downstream of another uncharacterized protein of about 880 amino acids in length, described by model TIGR02687.
Probab=97.79 E-value=0.0002 Score=78.30 Aligned_cols=200 Identities=14% Similarity=0.148 Sum_probs=101.4
Q ss_pred HHHHHHHHHHHHhcChhHHhhcCCCCCCceEEeCCCCChHHHHHHHHHHh----cCCCeeeechhhhHHHHhhcchHHHH
Q 007575 339 EAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGE----AEVPFISCSASEFVELYVGMGASRVR 414 (597)
Q Consensus 339 e~k~~L~eiv~~l~~p~~~~~lg~~~p~gVLL~GPPGTGKT~LArAIA~e----l~~pfi~is~sef~~~~vG~~e~~vr 414 (597)
.....|..++.++.. ..++++.||+|||||++|.+++.. .| -.++.+.++.....
T Consensus 194 ~k~~~L~rl~~fve~-----------~~Nli~lGp~GTGKThla~~l~~~~a~~sG---~f~T~a~Lf~~L~~------- 252 (449)
T TIGR02688 194 QKLLLLARLLPLVEP-----------NYNLIELGPKGTGKSYIYNNLSPYVILISG---GTITVAKLFYNIST------- 252 (449)
T ss_pred HHHHHHHhhHHHHhc-----------CCcEEEECCCCCCHHHHHHHHhHHHHHHcC---CcCcHHHHHHHHHH-------
Confidence 333445555555543 347999999999999999998776 24 22333444332211
Q ss_pred HHHHHHHhcCCeEEEEcCcchhhhhcCCcccccchhHHHHHHHHHHHHhcCC---------CCCCcEEEEEecCCCC---
Q 007575 415 DLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGF---------DSNSAVIVLGATNRSD--- 482 (597)
Q Consensus 415 ~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~eqtLnqLL~emdg~---------~~~~~VIVIaaTNrpd--- 482 (597)
..+. .-....+|+|||+..+...+. ...+..|...|..- ..+..+++++-+|.+.
T Consensus 253 ~~lg--~v~~~DlLI~DEvgylp~~~~-----------~~~v~imK~yMesg~fsRG~~~~~a~as~vfvGNi~~~v~~~ 319 (449)
T TIGR02688 253 RQIG--LVGRWDVVAFDEVATLKFAKP-----------KELIGILKNYMESGSFTRGDETKSSDASFVFLGNVPLTSEHM 319 (449)
T ss_pred HHHh--hhccCCEEEEEcCCCCcCCch-----------HHHHHHHHHHHHhCceeccceeeeeeeEEEEEcccCCcchhh
Confidence 1111 123456999999988653322 23445566666521 2234566666665421
Q ss_pred --------CC-----ChhhhCCCCcceEEEecC---C--CHHHH-------HHHHHHHHhcCC-CCCCCCCCHHHHHHhC
Q 007575 483 --------VL-----DPALRRPGRFDRVVMVET---P--DKIGR-------EAILKVHVSKKE-LPLAKDIDLGDIASMT 536 (597)
Q Consensus 483 --------~L-----D~aLlRpgRFd~~I~v~~---P--d~~eR-------~eILk~~l~~~~-~~l~~dvdl~~LA~~t 536 (597)
.| |.|++. ||. .++|- | ..+-. .+.|...+.... .... + .++.....-
T Consensus 320 ~~~~~Lf~~lP~~~~DsAflD--RiH--~yiPGWeipk~~~e~~t~~yGl~~DylsE~l~~lR~~~~~-~-~~~~~~~l~ 393 (449)
T TIGR02688 320 VKNSDLFSPLPEFMRDSAFLD--RIH--GYLPGWEIPKIRKEMFSNGYGFVVDYFAEALRELREREYA-D-IVDRHFSLS 393 (449)
T ss_pred cCcccccccCChhhhhhHHHH--hhh--ccCCCCcCccCCHHHcccCCcchHHHHHHHHHHHHhhHHH-H-hhhhheecC
Confidence 12 344444 442 22221 1 11110 122222221100 0000 0 123333444
Q ss_pred CCCCHHHHHHHHHHHHHHH-HhcCCCcccHHHHHHHHHHHhcc
Q 007575 537 TGFTGADLANLVNEAALLA-GRLNKVVVEKIDFIHAVERSIAV 578 (597)
Q Consensus 537 ~G~SgaDL~~Lv~eAal~A-~r~~~~~It~~d~~~Al~~v~~g 578 (597)
.+++.+|...+-....-+. ..-....++.+|++++++-++.+
T Consensus 394 ~~~~~RD~~aV~kt~SgllKLL~P~~~~~~ee~~~~l~~Ale~ 436 (449)
T TIGR02688 394 PNLNTRDVIAVKKTFSGLMKILFPHGTITKEEFTECLEPALEG 436 (449)
T ss_pred CCcchhhHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHH
Confidence 5678888776655543222 22345679999999988766544
No 279
>TIGR02012 tigrfam_recA protein RecA. This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.
Probab=97.78 E-value=0.00011 Score=78.15 Aligned_cols=119 Identities=19% Similarity=0.166 Sum_probs=67.9
Q ss_pred CCCCCCceEEeCCCCChHHHHHHHHHHhc---CCCeeeechhhhHHHH----hh------------cchHHHHHHHHHHH
Q 007575 361 GARPPRGVLLVGLPGTGKTLLAKAVAGEA---EVPFISCSASEFVELY----VG------------MGASRVRDLFARAK 421 (597)
Q Consensus 361 g~~~p~gVLL~GPPGTGKT~LArAIA~el---~~pfi~is~sef~~~~----vG------------~~e~~vr~lF~~A~ 421 (597)
|.+...-++|+||||||||+||-.++.++ +.+++.++..+..... .| ..+..+..+....+
T Consensus 51 Glp~G~iteI~G~~GsGKTtLaL~~~~~~~~~g~~v~yId~E~~~~~~~a~~lGvd~~~l~v~~p~~~eq~l~~~~~li~ 130 (321)
T TIGR02012 51 GLPRGRIIEIYGPESSGKTTLALHAIAEAQKAGGTAAFIDAEHALDPVYARKLGVDIDNLLVSQPDTGEQALEIAETLVR 130 (321)
T ss_pred CCcCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEcccchhHHHHHHHcCCCHHHeEEecCCCHHHHHHHHHHHhh
Confidence 45566678999999999999988776543 6677777654432210 01 12222333333345
Q ss_pred hcCCeEEEEcCcchhhhhcCCcccccc--hhHHHHHHHHHHHHhcCCCCCCcEEEEEecC
Q 007575 422 KEAPSIIFIDEIDAVAKSRDGRFRIVS--NDEREQTLNQLLTEMDGFDSNSAVIVLGATN 479 (597)
Q Consensus 422 ~~aP~ILfIDEIDaL~~~r~~~~~~~~--~~e~eqtLnqLL~emdg~~~~~~VIVIaaTN 479 (597)
...+++|+||-+.++.+...-....+. .....+.+++++..|...-...++.+|.+..
T Consensus 131 ~~~~~lIVIDSv~al~~~~E~e~~~g~~~~~~~aR~m~~~lr~L~~~l~~~~~tvi~tNQ 190 (321)
T TIGR02012 131 SGAVDIIVVDSVAALVPKAEIEGEMGDSHVGLQARLMSQALRKLTGALSKSNTTAIFINQ 190 (321)
T ss_pred ccCCcEEEEcchhhhccchhhcccccccchhHHHHHHHHHHHHHHHHHHhCCCEEEEEec
Confidence 577899999999998754211100011 1122344455555555444455667766654
No 280
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=97.70 E-value=0.00013 Score=75.72 Aligned_cols=114 Identities=24% Similarity=0.386 Sum_probs=67.6
Q ss_pred CceEEeCCCCChHHHHHHHHHHhcC----------CCeeeec-hhhhHHHHhhc-------------chHHHHHHHHHHH
Q 007575 366 RGVLLVGLPGTGKTLLAKAVAGEAE----------VPFISCS-ASEFVELYVGM-------------GASRVRDLFARAK 421 (597)
Q Consensus 366 ~gVLL~GPPGTGKT~LArAIA~el~----------~pfi~is-~sef~~~~vG~-------------~e~~vr~lF~~A~ 421 (597)
.+++|.||||+|||+|.+++++... ..+..++ ..++...+.+. ...+...++..++
T Consensus 112 ~~~~i~g~~g~GKttl~~~l~~~~~~~~G~i~~~g~~v~~~d~~~ei~~~~~~~~q~~~~~r~~v~~~~~k~~~~~~~i~ 191 (270)
T TIGR02858 112 LNTLIISPPQCGKTTLLRDLARILSTGISQLGLRGKKVGIVDERSEIAGCVNGVPQHDVGIRTDVLDGCPKAEGMMMLIR 191 (270)
T ss_pred eEEEEEcCCCCCHHHHHHHHhCccCCCCceEEECCEEeecchhHHHHHHHhcccccccccccccccccchHHHHHHHHHH
Confidence 5799999999999999999999763 2332222 12332221111 1122345667777
Q ss_pred hcCCeEEEEcCcchhhhhcCCcccccchhHHHHHHHHHHHHhcCCCCCCcEEEEEecCCCCCCC-------hhhhCCCCc
Q 007575 422 KEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATNRSDVLD-------PALRRPGRF 494 (597)
Q Consensus 422 ~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~eqtLnqLL~emdg~~~~~~VIVIaaTNrpd~LD-------~aLlRpgRF 494 (597)
...|.||++||+.. ...+..++..+. .+..+|+++..++..+ ..|+..+-|
T Consensus 192 ~~~P~villDE~~~-----------------~e~~~~l~~~~~-----~G~~vI~ttH~~~~~~~~~r~~~~~l~~~~~~ 249 (270)
T TIGR02858 192 SMSPDVIVVDEIGR-----------------EEDVEALLEALH-----AGVSIIATAHGRDVEDLYKRPVFKELIENEAF 249 (270)
T ss_pred hCCCCEEEEeCCCc-----------------HHHHHHHHHHHh-----CCCEEEEEechhHHHHHHhChHHHHHHhcCce
Confidence 78999999999621 122344555443 2456777887542211 123334567
Q ss_pred ceEEEec
Q 007575 495 DRVVMVE 501 (597)
Q Consensus 495 d~~I~v~ 501 (597)
++.+.+.
T Consensus 250 ~r~i~L~ 256 (270)
T TIGR02858 250 ERYVVLS 256 (270)
T ss_pred EEEEEEe
Confidence 8777775
No 281
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=97.69 E-value=0.00024 Score=71.90 Aligned_cols=77 Identities=19% Similarity=0.286 Sum_probs=47.2
Q ss_pred CCCCCCceEEeCCCCChHHHHHHHHHHhc---CCCeeeechhh----hHHHH--hhc-----------------------
Q 007575 361 GARPPRGVLLVGLPGTGKTLLAKAVAGEA---EVPFISCSASE----FVELY--VGM----------------------- 408 (597)
Q Consensus 361 g~~~p~gVLL~GPPGTGKT~LArAIA~el---~~pfi~is~se----f~~~~--vG~----------------------- 408 (597)
|.+...-++|+||||||||+++..++... +.+.++++..+ +.... .|.
T Consensus 20 gi~~g~~~~i~G~~G~GKTtl~~~~~~~~~~~g~~~~yi~~e~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~~~~~ 99 (230)
T PRK08533 20 GIPAGSLILIEGDESTGKSILSQRLAYGFLQNGYSVSYVSTQLTTTEFIKQMMSLGYDINKKLISGKLLYIPVYPLLSGN 99 (230)
T ss_pred CCCCCcEEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHhCCchHHHhhcCcEEEEEecccccCh
Confidence 45556679999999999999986554432 55555555432 11110 000
Q ss_pred --chHHHHHHHHHHHhcCCeEEEEcCcchhh
Q 007575 409 --GASRVRDLFARAKKEAPSIIFIDEIDAVA 437 (597)
Q Consensus 409 --~e~~vr~lF~~A~~~aP~ILfIDEIDaL~ 437 (597)
....+..+........|.+++|||+-.+.
T Consensus 100 ~~~~~~l~~il~~~~~~~~~~lVIDe~t~~l 130 (230)
T PRK08533 100 SEKRKFLKKLMNTRRFYEKDVIIIDSLSSLI 130 (230)
T ss_pred HHHHHHHHHHHHHHHhcCCCEEEEECccHHh
Confidence 02233445555555678899999998765
No 282
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=97.68 E-value=0.00022 Score=71.88 Aligned_cols=39 Identities=23% Similarity=0.291 Sum_probs=30.4
Q ss_pred CCCCCCceEEeCCCCChHHHHHHHHHHh---cCCCeeeechh
Q 007575 361 GARPPRGVLLVGLPGTGKTLLAKAVAGE---AEVPFISCSAS 399 (597)
Q Consensus 361 g~~~p~gVLL~GPPGTGKT~LArAIA~e---l~~pfi~is~s 399 (597)
|.+.+..++++|+||+|||+++.+++.+ .+.++++++..
T Consensus 21 G~~~g~~~~i~G~~GsGKt~l~~~~~~~~~~~g~~~~y~~~e 62 (234)
T PRK06067 21 GIPFPSLILIEGDHGTGKSVLSQQFVYGALKQGKKVYVITTE 62 (234)
T ss_pred CCcCCcEEEEECCCCCChHHHHHHHHHHHHhCCCEEEEEEcC
Confidence 6677778999999999999999999654 25666665543
No 283
>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=97.68 E-value=0.0002 Score=71.15 Aligned_cols=39 Identities=28% Similarity=0.284 Sum_probs=30.0
Q ss_pred CCCCCCceEEeCCCCChHHHHHHHHHHhc---CCCeeeechh
Q 007575 361 GARPPRGVLLVGLPGTGKTLLAKAVAGEA---EVPFISCSAS 399 (597)
Q Consensus 361 g~~~p~gVLL~GPPGTGKT~LArAIA~el---~~pfi~is~s 399 (597)
|.....-++|+|+||+|||+++..+|.+. +.++++++..
T Consensus 15 Gi~~g~i~~i~G~~GsGKT~l~~~~a~~~~~~g~~v~yi~~e 56 (218)
T cd01394 15 GVERGTVTQVYGPPGTGKTNIAIQLAVETAGQGKKVAYIDTE 56 (218)
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEECC
Confidence 45555669999999999999999998764 5566666543
No 284
>PRK13949 shikimate kinase; Provisional
Probab=97.68 E-value=0.00042 Score=66.86 Aligned_cols=32 Identities=44% Similarity=0.635 Sum_probs=29.4
Q ss_pred CceEEeCCCCChHHHHHHHHHHhcCCCeeeec
Q 007575 366 RGVLLVGLPGTGKTLLAKAVAGEAEVPFISCS 397 (597)
Q Consensus 366 ~gVLL~GPPGTGKT~LArAIA~el~~pfi~is 397 (597)
+.|+|+|+||+|||++++.+|+.++.+|+..+
T Consensus 2 ~~I~liG~~GsGKstl~~~La~~l~~~~id~D 33 (169)
T PRK13949 2 ARIFLVGYMGAGKTTLGKALARELGLSFIDLD 33 (169)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcCCCeeccc
Confidence 35999999999999999999999999998765
No 285
>PF05707 Zot: Zonular occludens toxin (Zot); InterPro: IPR008900 This entry consists of bacterial and viral proteins which are very similar to the Zonular occludens toxin (Zot). Zot is elaborated by bacteriophage present in toxigenic strains of Vibrio cholerae. Zot is a single polypeptide chain of 44.8 kDa, with the ability to reversibly alter intestinal epithelial tight junctions, allowing the passage of macromolecules through mucosal barriers.; PDB: 2R2A_B.
Probab=97.66 E-value=4.6e-05 Score=74.89 Aligned_cols=120 Identities=18% Similarity=0.167 Sum_probs=59.4
Q ss_pred eEEeCCCCChHHHHHHHH-HHh---cCCCeeeechhhhHH-HHhh---c----------------chHHHHHHHHHHHhc
Q 007575 368 VLLVGLPGTGKTLLAKAV-AGE---AEVPFISCSASEFVE-LYVG---M----------------GASRVRDLFARAKKE 423 (597)
Q Consensus 368 VLL~GPPGTGKT~LArAI-A~e---l~~pfi~is~sef~~-~~vG---~----------------~e~~vr~lF~~A~~~ 423 (597)
.+++|.||+|||+.|-.. ... .|.+++. +...+.- .... . ......+.. ...
T Consensus 3 ~~~~G~pGsGKS~~av~~~i~~~l~~gr~V~t-ni~gL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~ 78 (193)
T PF05707_consen 3 YLITGKPGSGKSYYAVSYVIIPALKKGRPVYT-NIPGLNIEKIQPVLGYDIPTRLIDLSDPDFEEDWDDPDDWR---KLP 78 (193)
T ss_dssp EEEE--TTSSHHHHHHHHHHH-GGGS---EEE---TTB-S--EEEE--TTT-S-----S--SSSEEGGGHHHHT---TSG
T ss_pred EEEEcCCCCcHhHHHHHHHHHHHHhCCCEEEE-ccCCcchhhhhhhccccccccccccccccchhhhhhhhhhc---ccC
Confidence 589999999999887655 432 3667665 4432211 1000 0 011122111 111
Q ss_pred CCeEEEEcCcchhhhhcCCcccccchhHHHHHHHHHHHHhcCCCCCCcEEEEEecCCCCCCChhhhCCCCcceEEEecCC
Q 007575 424 APSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATNRSDVLDPALRRPGRFDRVVMVETP 503 (597)
Q Consensus 424 aP~ILfIDEIDaL~~~r~~~~~~~~~~e~eqtLnqLL~emdg~~~~~~VIVIaaTNrpd~LD~aLlRpgRFd~~I~v~~P 503 (597)
..++|+|||++.+.+.+... .......+ +++... ...++-||.+|..+..+|+.+++ ..+.++.+..+
T Consensus 79 ~~~liviDEa~~~~~~r~~~-----~~~~~~~~-~~l~~h----Rh~g~diiliTQ~~~~id~~ir~--lve~~~~~~k~ 146 (193)
T PF05707_consen 79 KGSLIVIDEAQNFFPSRSWK-----GKKVPEII-EFLAQH----RHYGWDIILITQSPSQIDKFIRD--LVEYHYHCRKL 146 (193)
T ss_dssp TT-EEEETTGGGTSB---T------T----HHH-HGGGGC----CCTT-EEEEEES-GGGB-HHHHC--CEEEEEEEEE-
T ss_pred CCcEEEEECChhhcCCCccc-----cccchHHH-HHHHHh----CcCCcEEEEEeCCHHHHhHHHHH--HHheEEEEEee
Confidence 45799999999998877531 01112222 333322 24567888899999999999987 78877777655
No 286
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=97.66 E-value=0.00059 Score=75.47 Aligned_cols=194 Identities=18% Similarity=0.246 Sum_probs=99.3
Q ss_pred CCCCceEEeCCCCChHHHHHHHHHHhc---CCCeeeechhhhHH-------HH--------hhc-----chHHHHHHHHH
Q 007575 363 RPPRGVLLVGLPGTGKTLLAKAVAGEA---EVPFISCSASEFVE-------LY--------VGM-----GASRVRDLFAR 419 (597)
Q Consensus 363 ~~p~gVLL~GPPGTGKT~LArAIA~el---~~pfi~is~sef~~-------~~--------vG~-----~e~~vr~lF~~ 419 (597)
..|..++|+|++|+|||+++..+|..+ +..+..++++.+.. .+ .+. ....+++.++.
T Consensus 93 ~~p~vI~lvG~~GsGKTTtaakLA~~L~~~g~kV~lV~~D~~R~aa~eQL~~la~~~gvp~~~~~~~~d~~~i~~~al~~ 172 (437)
T PRK00771 93 LKPQTIMLVGLQGSGKTTTAAKLARYFKKKGLKVGLVAADTYRPAAYDQLKQLAEKIGVPFYGDPDNKDAVEIAKEGLEK 172 (437)
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEecCCCCCHHHHHHHHHHHHHcCCcEEecCCccCHHHHHHHHHHH
Confidence 457889999999999999999998765 55555555543311 11 111 11224455555
Q ss_pred HHhcCCeEEEEcCcchhhhhcCCcccccchhHHHHHHHHHHHHhcCCCCCCcEEEEEecCCCCCCChhh--hCCCCcceE
Q 007575 420 AKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATNRSDVLDPAL--RRPGRFDRV 497 (597)
Q Consensus 420 A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~eqtLnqLL~emdg~~~~~~VIVIaaTNrpd~LD~aL--lRpgRFd~~ 497 (597)
+... .+|+||..-.+.. + +..+.+|....+-..+...++|+-++...+.++.+- ...-.++ -
T Consensus 173 ~~~~--DvVIIDTAGr~~~----------d---~~lm~El~~l~~~~~pdevlLVvda~~gq~av~~a~~F~~~l~i~-g 236 (437)
T PRK00771 173 FKKA--DVIIVDTAGRHAL----------E---EDLIEEMKEIKEAVKPDEVLLVIDATIGQQAKNQAKAFHEAVGIG-G 236 (437)
T ss_pred hhcC--CEEEEECCCcccc----------h---HHHHHHHHHHHHHhcccceeEEEeccccHHHHHHHHHHHhcCCCC-E
Confidence 5443 6999998754321 1 222333332222223334455555554433333221 1100122 2
Q ss_pred EEecCCCHHHHH-HHHHHHHhcCCCC---------C--CCCCCHHHHHHhCCCCCHHHHHHHHHHHHHH---------HH
Q 007575 498 VMVETPDKIGRE-AILKVHVSKKELP---------L--AKDIDLGDIASMTTGFTGADLANLVNEAALL---------AG 556 (597)
Q Consensus 498 I~v~~Pd~~eR~-eILk~~l~~~~~~---------l--~~dvdl~~LA~~t~G~SgaDL~~Lv~eAal~---------A~ 556 (597)
+.+...|...+- .+|..... .+.| + -...+.+.++.+.-|+ +|+..|++.|... +.
T Consensus 237 vIlTKlD~~a~~G~~ls~~~~-~~~Pi~fig~Ge~v~Dle~f~~~~~~~~ilgm--gd~~~l~e~~~~~~~~~~~~~~~~ 313 (437)
T PRK00771 237 IIITKLDGTAKGGGALSAVAE-TGAPIKFIGTGEKIDDLERFDPDRFISRLLGM--GDLESLLEKVEEALDEEEEEKDVE 313 (437)
T ss_pred EEEecccCCCcccHHHHHHHH-HCcCEEEEecCCCcccCCcCCHHHHHHHHhCC--CChHHHHHHHHHhhhHHHHHHHHH
Confidence 344445544443 23333222 1111 1 1234577888777654 5777777755432 11
Q ss_pred hcCCCcccHHHHHHHHHHH
Q 007575 557 RLNKVVVEKIDFIHAVERS 575 (597)
Q Consensus 557 r~~~~~It~~d~~~Al~~v 575 (597)
+-.+...+.+||.+-++.+
T Consensus 314 ~~~~~~f~l~d~~~q~~~~ 332 (437)
T PRK00771 314 KMMKGKFTLKDMYKQLEAM 332 (437)
T ss_pred HHHcCCcCHHHHHHHHHHH
Confidence 2233467889998876665
No 287
>PRK08118 topology modulation protein; Reviewed
Probab=97.65 E-value=7.9e-05 Score=71.75 Aligned_cols=32 Identities=28% Similarity=0.563 Sum_probs=29.7
Q ss_pred ceEEeCCCCChHHHHHHHHHHhcCCCeeeech
Q 007575 367 GVLLVGLPGTGKTLLAKAVAGEAEVPFISCSA 398 (597)
Q Consensus 367 gVLL~GPPGTGKT~LArAIA~el~~pfi~is~ 398 (597)
.|+++||||+|||++|+.++..++.|++.++.
T Consensus 3 rI~I~G~~GsGKSTlak~L~~~l~~~~~~lD~ 34 (167)
T PRK08118 3 KIILIGSGGSGKSTLARQLGEKLNIPVHHLDA 34 (167)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCceecch
Confidence 58999999999999999999999999988764
No 288
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=97.64 E-value=3.3e-05 Score=69.06 Aligned_cols=30 Identities=40% Similarity=0.697 Sum_probs=27.2
Q ss_pred eEEeCCCCChHHHHHHHHHHhcCCCeeeec
Q 007575 368 VLLVGLPGTGKTLLAKAVAGEAEVPFISCS 397 (597)
Q Consensus 368 VLL~GPPGTGKT~LArAIA~el~~pfi~is 397 (597)
|+|+||||+|||++|+.+|..+|.+++.++
T Consensus 2 I~I~G~~gsGKST~a~~La~~~~~~~i~~d 31 (121)
T PF13207_consen 2 IIISGPPGSGKSTLAKELAERLGFPVISMD 31 (121)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHTCEEEEEH
T ss_pred EEEECCCCCCHHHHHHHHHHHHCCeEEEec
Confidence 789999999999999999999998877654
No 289
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=97.63 E-value=0.0003 Score=67.44 Aligned_cols=26 Identities=31% Similarity=0.500 Sum_probs=22.9
Q ss_pred CCCceEEeCCCCChHHHHHHHHHHhc
Q 007575 364 PPRGVLLVGLPGTGKTLLAKAVAGEA 389 (597)
Q Consensus 364 ~p~gVLL~GPPGTGKT~LArAIA~el 389 (597)
.+..++++|+||+|||+++.-++..+
T Consensus 4 ~~mki~ITG~PGvGKtTl~~ki~e~L 29 (179)
T COG1618 4 MAMKIFITGRPGVGKTTLVLKIAEKL 29 (179)
T ss_pred cceEEEEeCCCCccHHHHHHHHHHHH
Confidence 45569999999999999999999865
No 290
>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange.
Probab=97.62 E-value=0.0002 Score=76.19 Aligned_cols=119 Identities=19% Similarity=0.205 Sum_probs=65.3
Q ss_pred CCCCCCceEEeCCCCChHHHHHHHHHHhc---CCCeeeechhhhHHH-H---hh------------cchHHHHHHHHHHH
Q 007575 361 GARPPRGVLLVGLPGTGKTLLAKAVAGEA---EVPFISCSASEFVEL-Y---VG------------MGASRVRDLFARAK 421 (597)
Q Consensus 361 g~~~p~gVLL~GPPGTGKT~LArAIA~el---~~pfi~is~sef~~~-~---vG------------~~e~~vr~lF~~A~ 421 (597)
|.+..+-++++||||+|||+||-.++.++ +.+.+.++..+-... + .| ..+..+..+-..++
T Consensus 51 Glp~G~iteI~Gp~GsGKTtLal~~~~~~~~~g~~~vyId~E~~~~~~~a~~lGvd~~~l~v~~p~~~eq~l~i~~~li~ 130 (325)
T cd00983 51 GYPKGRIIEIYGPESSGKTTLALHAIAEAQKLGGTVAFIDAEHALDPVYAKKLGVDLDNLLISQPDTGEQALEIADSLVR 130 (325)
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEECccccHHHHHHHHcCCCHHHheecCCCCHHHHHHHHHHHHh
Confidence 45555678899999999999999887543 667777765432211 0 01 11222222223345
Q ss_pred hcCCeEEEEcCcchhhhhcCCcccccch--hHHHHHHHHHHHHhcCCCCCCcEEEEEecC
Q 007575 422 KEAPSIIFIDEIDAVAKSRDGRFRIVSN--DEREQTLNQLLTEMDGFDSNSAVIVLGATN 479 (597)
Q Consensus 422 ~~aP~ILfIDEIDaL~~~r~~~~~~~~~--~e~eqtLnqLL~emdg~~~~~~VIVIaaTN 479 (597)
...+++|+||-+-++.+...-....+.. ....+.+.+.+..|...-...++.+|.+..
T Consensus 131 s~~~~lIVIDSvaal~~~~E~~~~~~~~~~~~qaR~l~~~Lr~L~~~~~k~~~~vI~tNQ 190 (325)
T cd00983 131 SGAVDLIVVDSVAALVPKAEIEGEMGDSHVGLQARLMSQALRKLTGSINKSNTTVIFINQ 190 (325)
T ss_pred ccCCCEEEEcchHhhcccccccccccccchHHHHHHHHHHHHHHHHHHHhCCCEEEEEEc
Confidence 5678999999999987532111001111 112233444444444333345566666554
No 291
>COG1373 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=97.61 E-value=0.00094 Score=73.09 Aligned_cols=135 Identities=19% Similarity=0.168 Sum_probs=79.0
Q ss_pred ceEEeCCCCChHHHHHHHHHHhcCCCeeeechhhhHHHHhhcchHHHHHHHHHHHhcCCeEEEEcCcchhhhhcCCcccc
Q 007575 367 GVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFVELYVGMGASRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRI 446 (597)
Q Consensus 367 gVLL~GPPGTGKT~LArAIA~el~~pfi~is~sef~~~~vG~~e~~vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~ 446 (597)
-++|+||.+||||++++.+.....-.++.++..|........ ......+..+.....+.||||||+.+-
T Consensus 39 i~~i~GpR~~GKTtll~~l~~~~~~~~iy~~~~d~~~~~~~l--~d~~~~~~~~~~~~~~yifLDEIq~v~--------- 107 (398)
T COG1373 39 IILILGPRQVGKTTLLKLLIKGLLEEIIYINFDDLRLDRIEL--LDLLRAYIELKEREKSYIFLDEIQNVP--------- 107 (398)
T ss_pred EEEEECCccccHHHHHHHHHhhCCcceEEEEecchhcchhhH--HHHHHHHHHhhccCCceEEEecccCch---------
Confidence 799999999999999998888775555555554443322111 112222222222244699999998863
Q ss_pred cchhHHHHHHHHHHHHhcCCCCCCcEEEEEecCCC-CCCChhhhCCCCcceEEEecCCCHHHHHH-------------HH
Q 007575 447 VSNDEREQTLNQLLTEMDGFDSNSAVIVLGATNRS-DVLDPALRRPGRFDRVVMVETPDKIGREA-------------IL 512 (597)
Q Consensus 447 ~~~~e~eqtLnqLL~emdg~~~~~~VIVIaaTNrp-d~LD~aLlRpgRFd~~I~v~~Pd~~eR~e-------------IL 512 (597)
..+..+..| .|.... .+++ .+++.. -....+-.-+||. ..+.+.+.+..|... .+
T Consensus 108 ----~W~~~lk~l---~d~~~~--~v~i-tgsss~ll~~~~~~~L~GR~-~~~~l~PlSF~Efl~~~~~~~~~~~~~~~f 176 (398)
T COG1373 108 ----DWERALKYL---YDRGNL--DVLI-TGSSSSLLSKEISESLAGRG-KDLELYPLSFREFLKLKGEEIEPSKLELLF 176 (398)
T ss_pred ----hHHHHHHHH---Hccccc--eEEE-ECCchhhhccchhhhcCCCc-eeEEECCCCHHHHHhhcccccchhHHHHHH
Confidence 123333433 332222 3444 444433 2223333446895 478888889888864 57
Q ss_pred HHHHhcCCCCC
Q 007575 513 KVHVSKKELPL 523 (597)
Q Consensus 513 k~~l~~~~~~l 523 (597)
+.++...++|.
T Consensus 177 ~~Yl~~GGfP~ 187 (398)
T COG1373 177 EKYLETGGFPE 187 (398)
T ss_pred HHHHHhCCCcH
Confidence 77776655553
No 292
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=97.55 E-value=0.00022 Score=65.46 Aligned_cols=37 Identities=32% Similarity=0.474 Sum_probs=29.7
Q ss_pred eEEeCCCCChHHHHHHHHHHhcCCCeeeechhhhHHHHh
Q 007575 368 VLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFVELYV 406 (597)
Q Consensus 368 VLL~GPPGTGKT~LArAIA~el~~pfi~is~sef~~~~v 406 (597)
|+++||||+|||++|+.++..++ ...++..++.....
T Consensus 2 ii~~G~pgsGKSt~a~~l~~~~~--~~~i~~D~~~~~~~ 38 (143)
T PF13671_consen 2 IILCGPPGSGKSTLAKRLAKRLG--AVVISQDEIRRRLA 38 (143)
T ss_dssp EEEEESTTSSHHHHHHHHHHHST--EEEEEHHHHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHHHHCC--CEEEeHHHHHHHHc
Confidence 78999999999999999999988 44566666655443
No 293
>PRK14532 adenylate kinase; Provisional
Probab=97.54 E-value=0.0003 Score=68.19 Aligned_cols=36 Identities=25% Similarity=0.415 Sum_probs=29.6
Q ss_pred ceEEeCCCCChHHHHHHHHHHhcCCCeeeechhhhHHH
Q 007575 367 GVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFVEL 404 (597)
Q Consensus 367 gVLL~GPPGTGKT~LArAIA~el~~pfi~is~sef~~~ 404 (597)
.++|.||||+|||++|+.+|.+++.++++ ..+++..
T Consensus 2 ~i~~~G~pGsGKsT~a~~la~~~g~~~is--~~d~lr~ 37 (188)
T PRK14532 2 NLILFGPPAAGKGTQAKRLVEERGMVQLS--TGDMLRA 37 (188)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCCeEEe--CcHHHHH
Confidence 48999999999999999999999877664 4455544
No 294
>PF14516 AAA_35: AAA-like domain
Probab=97.54 E-value=0.004 Score=66.42 Aligned_cols=164 Identities=12% Similarity=0.099 Sum_probs=87.4
Q ss_pred CCceEEeCCCCChHHHHHHHHHHhc---CCCeeeechhhhHH-----------HHh-------h-------------cch
Q 007575 365 PRGVLLVGLPGTGKTLLAKAVAGEA---EVPFISCSASEFVE-----------LYV-------G-------------MGA 410 (597)
Q Consensus 365 p~gVLL~GPPGTGKT~LArAIA~el---~~pfi~is~sef~~-----------~~v-------G-------------~~e 410 (597)
+.-+.|.||..+|||+|...+...+ +...+.+++..+-. .+. + ...
T Consensus 31 G~~~~I~apRq~GKTSll~~l~~~l~~~~~~~v~id~~~~~~~~~~~~~~f~~~~~~~i~~~L~l~~~l~~~w~~~~~~~ 110 (331)
T PF14516_consen 31 GSYIRIKAPRQMGKTSLLLRLLERLQQQGYRCVYIDLQQLGSAIFSDLEQFLRWFCEEISRQLKLDEKLDEYWDEEIGSK 110 (331)
T ss_pred CCEEEEECcccCCHHHHHHHHHHHHHHCCCEEEEEEeecCCCcccCCHHHHHHHHHHHHHHHcCCChhHHHHHHHhcCCh
Confidence 3468999999999999999887654 66666666553211 000 0 011
Q ss_pred HHHHHHHHHH---HhcCCeEEEEcCcchhhhhcCCcccccchhHHHHHHHHHHHHhcCCCCCCcEEEEEec-CCCCCCCh
Q 007575 411 SRVRDLFARA---KKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGAT-NRSDVLDP 486 (597)
Q Consensus 411 ~~vr~lF~~A---~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~eqtLnqLL~emdg~~~~~~VIVIaaT-Nrpd~LD~ 486 (597)
......|++. ....|-||+|||||.+..... ..+..-..+..+-..-........+.+|.+. ..+.....
T Consensus 111 ~~~~~~~~~~ll~~~~~~lVL~iDEiD~l~~~~~------~~~dF~~~LR~~~~~~~~~~~~~~L~li~~~~t~~~~~~~ 184 (331)
T PF14516_consen 111 ISCTEYFEEYLLKQIDKPLVLFIDEIDRLFEYPQ------IADDFFGLLRSWYEQRKNNPIWQKLRLILAGSTEDYIILD 184 (331)
T ss_pred hhHHHHHHHHHHhcCCCCEEEEEechhhhccCcc------hHHHHHHHHHHHHHhcccCcccceEEEEEecCcccccccC
Confidence 2333444432 224688999999999974321 1111111111211111101111233333332 22222211
Q ss_pred hhhCCCCcceEEEecCCCHHHHHHHHHHHHhcCCCCCCCCCCHHHHHHhCCCC
Q 007575 487 ALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTTGF 539 (597)
Q Consensus 487 aLlRpgRFd~~I~v~~Pd~~eR~eILk~~l~~~~~~l~~dvdl~~LA~~t~G~ 539 (597)
.-.+|--+...+.++.-+.++...+++.|- ..+.... ++.|-..|.|.
T Consensus 185 ~~~SPFNIg~~i~L~~Ft~~ev~~L~~~~~----~~~~~~~-~~~l~~~tgGh 232 (331)
T PF14516_consen 185 INQSPFNIGQPIELPDFTPEEVQELAQRYG----LEFSQEQ-LEQLMDWTGGH 232 (331)
T ss_pred CCCCCcccccceeCCCCCHHHHHHHHHhhh----ccCCHHH-HHHHHHHHCCC
Confidence 123444445567778788899888887763 3344443 88888888874
No 295
>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid
Probab=97.53 E-value=0.0004 Score=68.80 Aligned_cols=104 Identities=21% Similarity=0.359 Sum_probs=59.1
Q ss_pred CceEEeCCCCChHHHHHHHHHHh-----cCCCe-------------eeechhhhHH----HHhhcchHHHHHHHHHHHhc
Q 007575 366 RGVLLVGLPGTGKTLLAKAVAGE-----AEVPF-------------ISCSASEFVE----LYVGMGASRVRDLFARAKKE 423 (597)
Q Consensus 366 ~gVLL~GPPGTGKT~LArAIA~e-----l~~pf-------------i~is~sef~~----~~vG~~e~~vr~lF~~A~~~ 423 (597)
+.++|.||+|+|||+|.|.++.. .|.++ ..++..+-+. .+. ....++..+++.+...
T Consensus 26 ~~~~ltGpNg~GKSTllr~i~~~~~l~~~G~~v~a~~~~~q~~~l~~~~~~~d~l~~~~s~~~-~e~~~~~~iL~~~~~~ 104 (199)
T cd03283 26 NGILITGSNMSGKSTFLRTIGVNVILAQAGAPVCASSFELPPVKIFTSIRVSDDLRDGISYFY-AELRRLKEIVEKAKKG 104 (199)
T ss_pred cEEEEECCCCCChHHHHHHHHHHHHHHHcCCEEecCccCcccceEEEeccchhccccccChHH-HHHHHHHHHHHhccCC
Confidence 56899999999999999999863 24322 1111111111 111 1124567777766655
Q ss_pred CCeEEEEcCcchhhhhcCCcccccchhHHHHHHHHHHHHhcCCCCCCcEEEEEecCCCCCC
Q 007575 424 APSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATNRSDVL 484 (597)
Q Consensus 424 aP~ILfIDEIDaL~~~r~~~~~~~~~~e~eqtLnqLL~emdg~~~~~~VIVIaaTNrpd~L 484 (597)
.|.+|++||.-+= ............++..+.. .+..+|.+|...+.+
T Consensus 105 ~p~llllDEp~~g----------lD~~~~~~l~~~ll~~l~~----~~~tiiivTH~~~~~ 151 (199)
T cd03283 105 EPVLFLLDEIFKG----------TNSRERQAASAAVLKFLKN----KNTIGIISTHDLELA 151 (199)
T ss_pred CCeEEEEecccCC----------CCHHHHHHHHHHHHHHHHH----CCCEEEEEcCcHHHH
Confidence 8899999997321 1112223334455555532 134666677766543
No 296
>cd00046 DEXDc DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
Probab=97.52 E-value=0.00057 Score=60.32 Aligned_cols=24 Identities=46% Similarity=0.450 Sum_probs=20.6
Q ss_pred CceEEeCCCCChHHHHHHHHHHhc
Q 007575 366 RGVLLVGLPGTGKTLLAKAVAGEA 389 (597)
Q Consensus 366 ~gVLL~GPPGTGKT~LArAIA~el 389 (597)
++++++||+|+|||+++-.++.++
T Consensus 1 ~~~~i~~~~G~GKT~~~~~~~~~~ 24 (144)
T cd00046 1 RDVLLAAPTGSGKTLAALLPILEL 24 (144)
T ss_pred CCEEEECCCCCchhHHHHHHHHHH
Confidence 368999999999999988887665
No 297
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.
Probab=97.50 E-value=0.00026 Score=70.45 Aligned_cols=116 Identities=20% Similarity=0.182 Sum_probs=65.6
Q ss_pred CCCCCCceEEeCCCCChHHHHHHHHHHhc---C------CCeeeechhhh------HHHH--hh---------------c
Q 007575 361 GARPPRGVLLVGLPGTGKTLLAKAVAGEA---E------VPFISCSASEF------VELY--VG---------------M 408 (597)
Q Consensus 361 g~~~p~gVLL~GPPGTGKT~LArAIA~el---~------~pfi~is~sef------~~~~--vG---------------~ 408 (597)
|.+...-+.|+||||+|||+++..+|... + ..+++++..+- .... .+ .
T Consensus 15 G~~~g~v~~I~G~~GsGKT~l~~~ia~~~~~~~~~~g~~~~v~yi~~e~~~~~~rl~~~~~~~~~~~~~~~~~i~~~~~~ 94 (226)
T cd01393 15 GIPTGRITEIFGEFGSGKTQLCLQLAVEAQLPGELGGLEGKVVYIDTEGAFRPERLVQLAVRFGLDPEEVLDNIYVARPY 94 (226)
T ss_pred CCcCCcEEEEeCCCCCChhHHHHHHHHHhhcccccCCCcceEEEEecCCCCCHHHHHHHHHHhccchhhhhccEEEEeCC
Confidence 56666678999999999999999998653 2 45555554321 1000 00 0
Q ss_pred chHHHHHHHHHH----HhcCCeEEEEcCcchhhhhcCCcccccchhHHHHHHHHHHHHhcCCCCCCcEEEEEec
Q 007575 409 GASRVRDLFARA----KKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGAT 478 (597)
Q Consensus 409 ~e~~vr~lF~~A----~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~eqtLnqLL~emdg~~~~~~VIVIaaT 478 (597)
....+...++.. ....+++|+||-|..+....... .....++.+.+.+++..|..+....++.||.++
T Consensus 95 ~~~~~~~~l~~~~~~~~~~~~~lvVIDsis~l~~~~~~~--~~~~~~~~~~l~~~~~~L~~~a~~~~~~vi~tn 166 (226)
T cd01393 95 NGEQQLEIVEELERIMSSGRVDLVVVDSVAALFRKEFIG--RGMLAERARLLSQALRKLLRLADKFNVAVVFTN 166 (226)
T ss_pred CHHHHHHHHHHHHHHhhcCCeeEEEEcCcchhhhhhhcC--CchHHHHHHHHHHHHHHHHHHHHHhCcEEEEEE
Confidence 111222223322 24567899999999886542110 011234455566666666555444555666554
No 298
>PRK07261 topology modulation protein; Provisional
Probab=97.50 E-value=0.00015 Score=69.89 Aligned_cols=31 Identities=23% Similarity=0.565 Sum_probs=28.5
Q ss_pred eEEeCCCCChHHHHHHHHHHhcCCCeeeech
Q 007575 368 VLLVGLPGTGKTLLAKAVAGEAEVPFISCSA 398 (597)
Q Consensus 368 VLL~GPPGTGKT~LArAIA~el~~pfi~is~ 398 (597)
|+|+|+||+|||+||+.++..++.|++..+.
T Consensus 3 i~i~G~~GsGKSTla~~l~~~~~~~~i~~D~ 33 (171)
T PRK07261 3 IAIIGYSGSGKSTLARKLSQHYNCPVLHLDT 33 (171)
T ss_pred EEEEcCCCCCHHHHHHHHHHHhCCCeEecCC
Confidence 8999999999999999999999999887754
No 299
>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .
Probab=97.48 E-value=0.00037 Score=69.78 Aligned_cols=117 Identities=20% Similarity=0.201 Sum_probs=65.1
Q ss_pred CCCCCCceEEeCCCCChHHHHHHHHHHhc---------CCCeeeechhhh------HHHH--hh----------------
Q 007575 361 GARPPRGVLLVGLPGTGKTLLAKAVAGEA---------EVPFISCSASEF------VELY--VG---------------- 407 (597)
Q Consensus 361 g~~~p~gVLL~GPPGTGKT~LArAIA~el---------~~pfi~is~sef------~~~~--vG---------------- 407 (597)
|.+...-+.|+||||+|||+++..++... +...++++..+- .... .+
T Consensus 15 Gi~~g~i~~i~G~~GsGKT~l~~~l~~~~~~~~~~~g~~~~viyi~~e~~~~~~rl~~~~~~~~~~~~~~~~~i~~~~~~ 94 (235)
T cd01123 15 GIETGSITEIFGEFGSGKTQLCHQLAVTVQLPIELGGLEGKAVYIDTEGTFRPERLVQIAERFGLDPEEVLDNIYVARAY 94 (235)
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHHeeCccccCCCCccEEEEeCCCCcCHHHHHHHHHHhccChHhHhcCEEEEecC
Confidence 56666778999999999999999997542 245666654331 1100 00
Q ss_pred ---cchHHHHHHHHHHHhc-CCeEEEEcCcchhhhhcCCcccccchhHHHHHHHHHHHHhcCCCCCCcEEEEEecC
Q 007575 408 ---MGASRVRDLFARAKKE-APSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATN 479 (597)
Q Consensus 408 ---~~e~~vr~lF~~A~~~-aP~ILfIDEIDaL~~~r~~~~~~~~~~e~eqtLnqLL~emdg~~~~~~VIVIaaTN 479 (597)
+....+..+-...... .+++|+||-|.++......+ .....++.+.+.+++..|..+....++.||.+..
T Consensus 95 ~~~~l~~~l~~l~~~l~~~~~~~liVIDSis~~~~~~~~~--~~~~~~r~~~l~~~~~~L~~la~~~~~avl~tn~ 168 (235)
T cd01123 95 NSDHQLQLLEELEAILIESSRIKLVIVDSVTALFRAEFDG--RGELAERQQHLAKLLRTLKRLADEFNVAVVITNQ 168 (235)
T ss_pred CHHHHHHHHHHHHHHHhhcCCeeEEEEeCcHHHHHHHhcC--CccHHHHHHHHHHHHHHHHHHHHHhCCEEEEecc
Confidence 0011112222233344 78899999999886431110 0112344455666666665444444556665543
No 300
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=97.47 E-value=0.00042 Score=68.36 Aligned_cols=97 Identities=26% Similarity=0.362 Sum_probs=51.3
Q ss_pred ceEEeCCCCChHHHHHHHHHHhc---CCCeeeechhhh----HHHHhhcchHHHHHHHHHHH---------hcCCeEEEE
Q 007575 367 GVLLVGLPGTGKTLLAKAVAGEA---EVPFISCSASEF----VELYVGMGASRVRDLFARAK---------KEAPSIIFI 430 (597)
Q Consensus 367 gVLL~GPPGTGKT~LArAIA~el---~~pfi~is~sef----~~~~vG~~e~~vr~lF~~A~---------~~aP~ILfI 430 (597)
.++|.||||||||++++.++..+ +..++.+..+.- +....|.....+..++.... .....+|+|
T Consensus 20 ~~~l~G~aGtGKT~~l~~~~~~~~~~g~~v~~~apT~~Aa~~L~~~~~~~a~Ti~~~l~~~~~~~~~~~~~~~~~~vliV 99 (196)
T PF13604_consen 20 VSVLQGPAGTGKTTLLKALAEALEAAGKRVIGLAPTNKAAKELREKTGIEAQTIHSFLYRIPNGDDEGRPELPKKDVLIV 99 (196)
T ss_dssp EEEEEESTTSTHHHHHHHHHHHHHHTT--EEEEESSHHHHHHHHHHHTS-EEEHHHHTTEECCEECCSSCC-TSTSEEEE
T ss_pred EEEEEECCCCCHHHHHHHHHHHHHhCCCeEEEECCcHHHHHHHHHhhCcchhhHHHHHhcCCcccccccccCCcccEEEE
Confidence 57889999999999999986543 566666554321 11111222223333222211 122369999
Q ss_pred cCcchhhhhcCCcccccchhHHHHHHHHHHHHhcCCCCCCcEEEEEecCC
Q 007575 431 DEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATNR 480 (597)
Q Consensus 431 DEIDaL~~~r~~~~~~~~~~e~eqtLnqLL~emdg~~~~~~VIVIaaTNr 480 (597)
||+..+.. ..+..|+..+.. ...++++++-.+.
T Consensus 100 DEasmv~~---------------~~~~~ll~~~~~--~~~klilvGD~~Q 132 (196)
T PF13604_consen 100 DEASMVDS---------------RQLARLLRLAKK--SGAKLILVGDPNQ 132 (196)
T ss_dssp SSGGG-BH---------------HHHHHHHHHS-T---T-EEEEEE-TTS
T ss_pred ecccccCH---------------HHHHHHHHHHHh--cCCEEEEECCcch
Confidence 99976642 244556665542 2456777776553
No 301
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=97.45 E-value=0.0011 Score=68.11 Aligned_cols=27 Identities=30% Similarity=0.382 Sum_probs=23.4
Q ss_pred CCceEEeCCCCChHHHHHHHHHHhcCC
Q 007575 365 PRGVLLVGLPGTGKTLLAKAVAGEAEV 391 (597)
Q Consensus 365 p~gVLL~GPPGTGKT~LArAIA~el~~ 391 (597)
...++|.||+|+|||+|++.+++....
T Consensus 16 Gqr~~I~G~~G~GKTTLlr~I~n~l~~ 42 (249)
T cd01128 16 GQRGLIVAPPKAGKTTLLQSIANAITK 42 (249)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhcccc
Confidence 345999999999999999999987643
No 302
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.45 E-value=0.0018 Score=70.65 Aligned_cols=163 Identities=12% Similarity=0.201 Sum_probs=86.8
Q ss_pred CCCceEEeCCCCChHHHHHHHHHHhc-------CCCeeeechhhhH-------HHH---------hhcchHHHHHHHHHH
Q 007575 364 PPRGVLLVGLPGTGKTLLAKAVAGEA-------EVPFISCSASEFV-------ELY---------VGMGASRVRDLFARA 420 (597)
Q Consensus 364 ~p~gVLL~GPPGTGKT~LArAIA~el-------~~pfi~is~sef~-------~~~---------vG~~e~~vr~lF~~A 420 (597)
.|..++|+||+|+|||+++..+|..+ +..+..++++.+. ..| +......+...+...
T Consensus 173 ~~~vi~lvGptGvGKTTT~aKLA~~~~~~~~~~g~~V~lit~Dt~R~aa~eQL~~~a~~lgvpv~~~~~~~~l~~~L~~~ 252 (388)
T PRK12723 173 KKRVFILVGPTGVGKTTTIAKLAAIYGINSDDKSLNIKIITIDNYRIGAKKQIQTYGDIMGIPVKAIESFKDLKEEITQS 252 (388)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEeccCccHHHHHHHHHHhhcCCcceEeeCcHHHHHHHHHHh
Confidence 46789999999999999999888754 2344444433221 111 111223334444433
Q ss_pred HhcCCeEEEEcCcchhhhhcCCcccccchhHHHHHHHHHHHHhcCCCCC-CcEEEEEecCCCCCCChhhhCCC--CcceE
Q 007575 421 KKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSN-SAVIVLGATNRSDVLDPALRRPG--RFDRV 497 (597)
Q Consensus 421 ~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~eqtLnqLL~emdg~~~~-~~VIVIaaTNrpd~LD~aLlRpg--RFd~~ 497 (597)
....+|+||++..... + ...+.++...++..... ..++|+.+|.....+...+.+-. .++ .
T Consensus 253 --~~~DlVLIDTaGr~~~----------~---~~~l~el~~~l~~~~~~~e~~LVlsat~~~~~~~~~~~~~~~~~~~-~ 316 (388)
T PRK12723 253 --KDFDLVLVDTIGKSPK----------D---FMKLAEMKELLNACGRDAEFHLAVSSTTKTSDVKEIFHQFSPFSYK-T 316 (388)
T ss_pred --CCCCEEEEcCCCCCcc----------C---HHHHHHHHHHHHhcCCCCeEEEEEcCCCCHHHHHHHHHHhcCCCCC-E
Confidence 3356999999865421 1 11244555555544333 56778888877776765554311 133 4
Q ss_pred EEecCCCHHHHHH-HHHHHHhcCCCC---------CCCC---CCHHHHHHhCCCCCHHH
Q 007575 498 VMVETPDKIGREA-ILKVHVSKKELP---------LAKD---IDLGDIASMTTGFTGAD 543 (597)
Q Consensus 498 I~v~~Pd~~eR~e-ILk~~l~~~~~~---------l~~d---vdl~~LA~~t~G~SgaD 543 (597)
+-+...|...+.. ++..... .++| +.+| .+...+++...||+-++
T Consensus 317 ~I~TKlDet~~~G~~l~~~~~-~~~Pi~yit~Gq~vPeDl~~~~~~~~~~~l~g~~~~~ 374 (388)
T PRK12723 317 VIFTKLDETTCVGNLISLIYE-MRKEVSYVTDGQIVPHNISIAEPLTFIKKINGYRISD 374 (388)
T ss_pred EEEEeccCCCcchHHHHHHHH-HCCCEEEEeCCCCChhhhhhCCHHHHHHHhcCCCccc
Confidence 5555555554443 3333322 2222 2222 24566666666776644
No 303
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=97.45 E-value=0.0011 Score=67.22 Aligned_cols=39 Identities=31% Similarity=0.388 Sum_probs=30.1
Q ss_pred CCCCCCceEEeCCCCChHHHHHHHHHHh---cCCCeeeechh
Q 007575 361 GARPPRGVLLVGLPGTGKTLLAKAVAGE---AEVPFISCSAS 399 (597)
Q Consensus 361 g~~~p~gVLL~GPPGTGKT~LArAIA~e---l~~pfi~is~s 399 (597)
|.++...+|++||||+|||++|..++.+ .|-+.++++..
T Consensus 17 G~~~gs~~lI~G~pGsGKT~la~~~l~~~~~~ge~~lyvs~e 58 (237)
T TIGR03877 17 GIPERNVVLLSGGPGTGKSIFSQQFLWNGLQMGEPGIYVALE 58 (237)
T ss_pred CCcCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCcEEEEEee
Confidence 6677788999999999999999877554 36666666543
No 304
>PRK10536 hypothetical protein; Provisional
Probab=97.45 E-value=0.00071 Score=69.72 Aligned_cols=46 Identities=26% Similarity=0.333 Sum_probs=31.7
Q ss_pred cccccccCChHHHHHHHHHHHHhcChhHHhhcCCCCCCceEEeCCCCChHHHHHHHHHHh
Q 007575 329 ITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGE 388 (597)
Q Consensus 329 vtf~dV~G~de~k~~L~eiv~~l~~p~~~~~lg~~~p~gVLL~GPPGTGKT~LArAIA~e 388 (597)
..+.-+.+..+....+...+. +. .-+++.||+|||||+||.+++-+
T Consensus 52 ~~~~~i~p~n~~Q~~~l~al~---~~-----------~lV~i~G~aGTGKT~La~a~a~~ 97 (262)
T PRK10536 52 RDTSPILARNEAQAHYLKAIE---SK-----------QLIFATGEAGCGKTWISAAKAAE 97 (262)
T ss_pred cCCccccCCCHHHHHHHHHHh---cC-----------CeEEEECCCCCCHHHHHHHHHHH
Confidence 334445666666555555442 21 25899999999999999999885
No 305
>COG0703 AroK Shikimate kinase [Amino acid transport and metabolism]
Probab=97.44 E-value=0.00036 Score=67.65 Aligned_cols=40 Identities=30% Similarity=0.612 Sum_probs=32.6
Q ss_pred CceEEeCCCCChHHHHHHHHHHhcCCCeeeechhhhHHHHhh
Q 007575 366 RGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFVELYVG 407 (597)
Q Consensus 366 ~gVLL~GPPGTGKT~LArAIA~el~~pfi~is~sef~~~~vG 407 (597)
.+++|+|++|+|||++.+++|+.++.+|+-.+ ..++...|
T Consensus 3 ~~IvLiG~mGaGKSTIGr~LAk~L~~~F~D~D--~~Ie~~~g 42 (172)
T COG0703 3 MNIVLIGFMGAGKSTIGRALAKALNLPFIDTD--QEIEKRTG 42 (172)
T ss_pred ccEEEEcCCCCCHhHHHHHHHHHcCCCcccch--HHHHHHHC
Confidence 46999999999999999999999999998653 44444333
No 306
>PRK04296 thymidine kinase; Provisional
Probab=97.44 E-value=0.00053 Score=67.29 Aligned_cols=70 Identities=17% Similarity=0.142 Sum_probs=41.2
Q ss_pred ceEEeCCCCChHHHHHHHHHHhc---CCCeeeech--h--hhHH---HHhhcc-----hHHHHHHHHHHH--hcCCeEEE
Q 007575 367 GVLLVGLPGTGKTLLAKAVAGEA---EVPFISCSA--S--EFVE---LYVGMG-----ASRVRDLFARAK--KEAPSIIF 429 (597)
Q Consensus 367 gVLL~GPPGTGKT~LArAIA~el---~~pfi~is~--s--ef~~---~~vG~~-----e~~vr~lF~~A~--~~aP~ILf 429 (597)
-+|++||||+|||+++..++.++ +..++.+.. . .... ...|.. .....++++.+. ...+.+|+
T Consensus 4 i~litG~~GsGKTT~~l~~~~~~~~~g~~v~i~k~~~d~~~~~~~i~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~dvvi 83 (190)
T PRK04296 4 LEFIYGAMNSGKSTELLQRAYNYEERGMKVLVFKPAIDDRYGEGKVVSRIGLSREAIPVSSDTDIFELIEEEGEKIDCVL 83 (190)
T ss_pred EEEEECCCCCHHHHHHHHHHHHHHHcCCeEEEEeccccccccCCcEecCCCCcccceEeCChHHHHHHHHhhCCCCCEEE
Confidence 37899999999999998887765 555554532 1 1100 001110 112344444443 34567999
Q ss_pred EcCcchh
Q 007575 430 IDEIDAV 436 (597)
Q Consensus 430 IDEIDaL 436 (597)
|||++.+
T Consensus 84 IDEaq~l 90 (190)
T PRK04296 84 IDEAQFL 90 (190)
T ss_pred EEccccC
Confidence 9999655
No 307
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.44 E-value=0.00033 Score=75.91 Aligned_cols=111 Identities=18% Similarity=0.347 Sum_probs=63.2
Q ss_pred CCCCceEEeCCCCChHHHHHHHHHHhc----C-CCeeeechhhh-------HHH---Hhhc------chHHHHHHHHHHH
Q 007575 363 RPPRGVLLVGLPGTGKTLLAKAVAGEA----E-VPFISCSASEF-------VEL---YVGM------GASRVRDLFARAK 421 (597)
Q Consensus 363 ~~p~gVLL~GPPGTGKT~LArAIA~el----~-~pfi~is~sef-------~~~---~vG~------~e~~vr~lF~~A~ 421 (597)
.....++|+||+|+|||+++..+|..+ | ..+..+....+ ... ..|. ....+...+...
T Consensus 135 ~~g~ii~lvGptGvGKTTtiakLA~~~~~~~G~~~V~lit~D~~R~ga~EqL~~~a~~~gv~~~~~~~~~~l~~~l~~l- 213 (374)
T PRK14722 135 ERGGVFALMGPTGVGKTTTTAKLAARCVMRFGASKVALLTTDSYRIGGHEQLRIFGKILGVPVHAVKDGGDLQLALAEL- 213 (374)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecccccccHHHHHHHHHHHcCCceEecCCcccHHHHHHHh-
Confidence 345679999999999999999998763 3 23444444332 111 1121 111223333332
Q ss_pred hcCCeEEEEcCcchhhhhcCCcccccchhHHHHHHHHHHHHhcCCCC-CCcEEEEEecCCCCCCChhhh
Q 007575 422 KEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDS-NSAVIVLGATNRSDVLDPALR 489 (597)
Q Consensus 422 ~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~eqtLnqLL~emdg~~~-~~~VIVIaaTNrpd~LD~aLl 489 (597)
...++|+||....... +..+.+.+..+.+... ...++|+.+|+..+.++..+.
T Consensus 214 -~~~DlVLIDTaG~~~~--------------d~~l~e~La~L~~~~~~~~~lLVLsAts~~~~l~evi~ 267 (374)
T PRK14722 214 -RNKHMVLIDTIGMSQR--------------DRTVSDQIAMLHGADTPVQRLLLLNATSHGDTLNEVVQ 267 (374)
T ss_pred -cCCCEEEEcCCCCCcc--------------cHHHHHHHHHHhccCCCCeEEEEecCccChHHHHHHHH
Confidence 3456999999843211 1234445555544333 345788888888877765543
No 308
>KOG2170 consensus ATPase of the AAA+ superfamily [General function prediction only]
Probab=97.42 E-value=0.0031 Score=65.97 Aligned_cols=96 Identities=25% Similarity=0.368 Sum_probs=61.1
Q ss_pred cccCChHHHHHHHHHHHH-hcChhHHhhcCCCCCCceEEeCCCCChHHHHHHHHHHhc-----CCCeeee-------chh
Q 007575 333 DVAGVDEAKEELEEIVEF-LRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEA-----EVPFISC-------SAS 399 (597)
Q Consensus 333 dV~G~de~k~~L~eiv~~-l~~p~~~~~lg~~~p~gVLL~GPPGTGKT~LArAIA~el-----~~pfi~i-------s~s 399 (597)
.+.|+.-+++.+-..+.. +.++ ..+.|.-+=|+|++||||.+.++.||+.+ .-||+.. .-.
T Consensus 83 ~lfGQHla~~~Vv~alk~~~~n~------~p~KPLvLSfHG~tGTGKN~Va~iiA~n~~~~Gl~S~~V~~fvat~hFP~~ 156 (344)
T KOG2170|consen 83 ALFGQHLAKQLVVNALKSHWANP------NPRKPLVLSFHGWTGTGKNYVAEIIAENLYRGGLRSPFVHHFVATLHFPHA 156 (344)
T ss_pred HhhchHHHHHHHHHHHHHHhcCC------CCCCCeEEEecCCCCCchhHHHHHHHHHHHhccccchhHHHhhhhccCCCh
Confidence 478999998888777765 4333 12345556689999999999999999865 2222211 111
Q ss_pred hhHHHHhhcchHHHHHHHHHHHhcCCeEEEEcCcchhh
Q 007575 400 EFVELYVGMGASRVRDLFARAKKEAPSIIFIDEIDAVA 437 (597)
Q Consensus 400 ef~~~~vG~~e~~vr~lF~~A~~~aP~ILfIDEIDaL~ 437 (597)
.-++.|-.+-...+++ .+..+..+|.++||+|.+.
T Consensus 157 ~~ie~Yk~eL~~~v~~---~v~~C~rslFIFDE~DKmp 191 (344)
T KOG2170|consen 157 SKIEDYKEELKNRVRG---TVQACQRSLFIFDEVDKLP 191 (344)
T ss_pred HHHHHHHHHHHHHHHH---HHHhcCCceEEechhhhcC
Confidence 2233343333334444 3445666799999999985
No 309
>KOG2383 consensus Predicted ATPase [General function prediction only]
Probab=97.42 E-value=0.0011 Score=71.57 Aligned_cols=28 Identities=36% Similarity=0.617 Sum_probs=24.8
Q ss_pred CCCCCceEEeCCCCChHHHHHHHHHHhc
Q 007575 362 ARPPRGVLLVGLPGTGKTLLAKAVAGEA 389 (597)
Q Consensus 362 ~~~p~gVLL~GPPGTGKT~LArAIA~el 389 (597)
..+|+|++|||.-|||||+|.-.+...+
T Consensus 111 ~~~PkGlYlYG~VGcGKTmLMDlFy~~~ 138 (467)
T KOG2383|consen 111 PGPPKGLYLYGSVGCGKTMLMDLFYDAL 138 (467)
T ss_pred CCCCceEEEecccCcchhHHHHHHhhcC
Confidence 4469999999999999999999988654
No 310
>PRK06762 hypothetical protein; Provisional
Probab=97.42 E-value=0.00052 Score=65.14 Aligned_cols=41 Identities=20% Similarity=0.185 Sum_probs=33.5
Q ss_pred CCceEEeCCCCChHHHHHHHHHHhcCCCeeeechhhhHHHH
Q 007575 365 PRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFVELY 405 (597)
Q Consensus 365 p~gVLL~GPPGTGKT~LArAIA~el~~pfi~is~sef~~~~ 405 (597)
|.-++|+|+||+|||++|+.++.+++..++.++...+....
T Consensus 2 ~~li~i~G~~GsGKST~A~~L~~~l~~~~~~i~~D~~r~~l 42 (166)
T PRK06762 2 TTLIIIRGNSGSGKTTIAKQLQERLGRGTLLVSQDVVRRDM 42 (166)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCCeEEecHHHHHHHh
Confidence 45689999999999999999999986667777777665543
No 311
>PTZ00202 tuzin; Provisional
Probab=97.41 E-value=0.013 Score=64.64 Aligned_cols=62 Identities=16% Similarity=0.332 Sum_probs=49.1
Q ss_pred cccccccCChHHHHHHHHHHHHhcChhHHhhcCCCCCCceEEeCCCCChHHHHHHHHHHhcCCCeeeechh
Q 007575 329 ITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSAS 399 (597)
Q Consensus 329 vtf~dV~G~de~k~~L~eiv~~l~~p~~~~~lg~~~p~gVLL~GPPGTGKT~LArAIA~el~~pfi~is~s 399 (597)
....+++|-++...+|..++... ....|.-+.|+||+|||||+|++.++..++.+.+.++..
T Consensus 259 a~~~~FVGReaEla~Lr~VL~~~---------d~~~privvLtG~~G~GKTTLlR~~~~~l~~~qL~vNpr 320 (550)
T PTZ00202 259 AVIRQFVSREAEESWVRQVLRRL---------DTAHPRIVVFTGFRGCGKSSLCRSAVRKEGMPAVFVDVR 320 (550)
T ss_pred CCccCCCCcHHHHHHHHHHHhcc---------CCCCceEEEEECCCCCCHHHHHHHHHhcCCceEEEECCC
Confidence 44568999999999998888632 222345688999999999999999999998877766654
No 312
>TIGR00416 sms DNA repair protein RadA. The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).
Probab=97.41 E-value=0.00094 Score=74.32 Aligned_cols=78 Identities=26% Similarity=0.400 Sum_probs=54.9
Q ss_pred CCCCCCceEEeCCCCChHHHHHHHHHHhc---CCCeeeechhhhHHHH------hhc--------chHHHHHHHHHHHhc
Q 007575 361 GARPPRGVLLVGLPGTGKTLLAKAVAGEA---EVPFISCSASEFVELY------VGM--------GASRVRDLFARAKKE 423 (597)
Q Consensus 361 g~~~p~gVLL~GPPGTGKT~LArAIA~el---~~pfi~is~sef~~~~------vG~--------~e~~vr~lF~~A~~~ 423 (597)
|..+..-+||+|+||+|||+|+..++... +.++++++..+-.+.. .|. .+..+.++...+...
T Consensus 90 Gi~~GsvilI~G~pGsGKTTL~lq~a~~~a~~g~kvlYvs~EEs~~qi~~ra~rlg~~~~~l~~~~e~~~~~I~~~i~~~ 169 (454)
T TIGR00416 90 GIVPGSLILIGGDPGIGKSTLLLQVACQLAKNQMKVLYVSGEESLQQIKMRAIRLGLPEPNLYVLSETNWEQICANIEEE 169 (454)
T ss_pred CccCCeEEEEEcCCCCCHHHHHHHHHHHHHhcCCcEEEEECcCCHHHHHHHHHHcCCChHHeEEcCCCCHHHHHHHHHhc
Confidence 55666678999999999999999997754 4577777765433321 111 112345666667777
Q ss_pred CCeEEEEcCcchhhh
Q 007575 424 APSIIFIDEIDAVAK 438 (597)
Q Consensus 424 aP~ILfIDEIDaL~~ 438 (597)
.|.+|+||.|..+..
T Consensus 170 ~~~~vVIDSIq~l~~ 184 (454)
T TIGR00416 170 NPQACVIDSIQTLYS 184 (454)
T ss_pred CCcEEEEecchhhcc
Confidence 899999999999864
No 313
>PRK15455 PrkA family serine protein kinase; Provisional
Probab=97.40 E-value=0.00016 Score=81.54 Aligned_cols=64 Identities=25% Similarity=0.329 Sum_probs=44.5
Q ss_pred cccccccCChHHHHHHHHHHHHhcChhHHhhcCCCCCCceEEeCCCCChHHHHHHHHHHhc-CCCeeeech
Q 007575 329 ITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEA-EVPFISCSA 398 (597)
Q Consensus 329 vtf~dV~G~de~k~~L~eiv~~l~~p~~~~~lg~~~p~gVLL~GPPGTGKT~LArAIA~el-~~pfi~is~ 398 (597)
.-|+|+.|++++++.+.+.+.. . ...++ ....-++|+||||+|||+||++||.-+ ..|++.+.+
T Consensus 73 ~fF~d~yGlee~ieriv~~l~~---A--a~gl~-~~~~IL~LvGPpG~GKSsLa~~la~~le~~~~Y~~kg 137 (644)
T PRK15455 73 PAFEEFYGMEEAIEQIVSYFRH---A--AQGLE-EKKQILYLLGPVGGGKSSLAERLKSLMERVPIYVLKA 137 (644)
T ss_pred cchhcccCcHHHHHHHHHHHHH---H--HHhcC-CCCceEEEecCCCCCchHHHHHHHHHHHhCcceeecC
Confidence 4688999999998777765532 1 11111 233478899999999999999999865 235555433
No 314
>PF00437 T2SE: Type II/IV secretion system protein; InterPro: IPR001482 A number of bacterial proteins, some of which are involved in a general secretion pathway (GSP) for the export of proteins (also called the type II pathway) belong to this group [, ]. These proteins are probably located in the cytoplasm and, on the basis of the presence of a conserved P-loop region IPR001687 from INTERPRO, bind ATP.; GO: 0005524 ATP binding, 0006810 transport, 0005622 intracellular; PDB: 1NLZ_C 2PT7_B 1OPX_A 1NLY_A 1G6O_B 2OAQ_2 2OAP_1 2JNQ_A 2JMZ_A 2GZA_B ....
Probab=97.40 E-value=0.00012 Score=75.16 Aligned_cols=98 Identities=23% Similarity=0.336 Sum_probs=61.6
Q ss_pred CCcccccccCChHHHHHHHHHHHHhcChhHHhhcCCCCCCceEEeCCCCChHHHHHHHHHHhcCCC---eeeec-hhhhH
Q 007575 327 DTITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVP---FISCS-ASEFV 402 (597)
Q Consensus 327 ~~vtf~dV~G~de~k~~L~eiv~~l~~p~~~~~lg~~~p~gVLL~GPPGTGKT~LArAIA~el~~p---fi~is-~sef~ 402 (597)
...+++++.-.....+.+.+++...- +...++++.||+|+|||++++++..+.... ++.+. ..++.
T Consensus 99 ~~~sle~l~~~~~~~~~~~~~l~~~v----------~~~~~ili~G~tGSGKTT~l~all~~i~~~~~~iv~iEd~~E~~ 168 (270)
T PF00437_consen 99 KPFSLEDLGESGSIPEEIAEFLRSAV----------RGRGNILISGPTGSGKTTLLNALLEEIPPEDERIVTIEDPPELR 168 (270)
T ss_dssp S--CHCCCCHTHHCHHHHHHHHHHCH----------HTTEEEEEEESTTSSHHHHHHHHHHHCHTTTSEEEEEESSS-S-
T ss_pred ccccHhhccCchhhHHHHHHHHhhcc----------ccceEEEEECCCccccchHHHHHhhhccccccceEEecccccee
Confidence 45688888777766666666665421 123479999999999999999999887443 23222 11221
Q ss_pred HH------Hh-hcchHHHHHHHHHHHhcCCeEEEEcCcc
Q 007575 403 EL------YV-GMGASRVRDLFARAKKEAPSIIFIDEID 434 (597)
Q Consensus 403 ~~------~v-G~~e~~vr~lF~~A~~~aP~ILfIDEID 434 (597)
-. +. ........+++..+....|++|+|+||-
T Consensus 169 l~~~~~~~~~~~~~~~~~~~~l~~~LR~~pD~iiigEiR 207 (270)
T PF00437_consen 169 LPGPNQIQIQTRRDEISYEDLLKSALRQDPDVIIIGEIR 207 (270)
T ss_dssp -SCSSEEEEEEETTTBSHHHHHHHHTTS--SEEEESCE-
T ss_pred ecccceEEEEeecCcccHHHHHHHHhcCCCCcccccccC
Confidence 10 00 1234467788888999999999999994
No 315
>COG4650 RtcR Sigma54-dependent transcription regulator containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms]
Probab=97.39 E-value=0.00042 Score=71.98 Aligned_cols=190 Identities=21% Similarity=0.255 Sum_probs=102.0
Q ss_pred CCCCCceEEeCCCCChHHHHHHHHHH------hcCCCeeeechhhhHHH-----Hhhc------chHHH-HHHHHHHHhc
Q 007575 362 ARPPRGVLLVGLPGTGKTLLAKAVAG------EAEVPFISCSASEFVEL-----YVGM------GASRV-RDLFARAKKE 423 (597)
Q Consensus 362 ~~~p~gVLL~GPPGTGKT~LArAIA~------el~~pfi~is~sef~~~-----~vG~------~e~~v-r~lF~~A~~~ 423 (597)
.+....+||.||.|.||+.||+.|.. .+.-+|+.++|..+... ..|. ++..- ..+++.|
T Consensus 205 ~rsr~p~ll~gptgagksflarriyelk~arhq~sg~fvevncatlrgd~amsalfghvkgaftga~~~r~gllrsa--- 281 (531)
T COG4650 205 IRSRAPILLNGPTGAGKSFLARRIYELKQARHQFSGAFVEVNCATLRGDTAMSALFGHVKGAFTGARESREGLLRSA--- 281 (531)
T ss_pred hhccCCeEeecCCCcchhHHHHHHHHHHHHHHhcCCceEEEeeeeecCchHHHHHHhhhccccccchhhhhhhhccC---
Confidence 44556799999999999999999864 45789999999866321 1111 11111 1222222
Q ss_pred CCeEEEEcCcchhhhhcCCcccccchhHHHHHHHHHHHHhcC--CC-------CCCcEEEEEecCCC-------CCCChh
Q 007575 424 APSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDG--FD-------SNSAVIVLGATNRS-------DVLDPA 487 (597)
Q Consensus 424 aP~ILfIDEIDaL~~~r~~~~~~~~~~e~eqtLnqLL~emdg--~~-------~~~~VIVIaaTNrp-------d~LD~a 487 (597)
...++|+|||..|+...+ ..||..++. |- ..+.+-+|+.|.+. ..+-+.
T Consensus 282 dggmlfldeigelgadeq---------------amllkaieekrf~pfgsdr~v~sdfqliagtvrdlrq~vaeg~fred 346 (531)
T COG4650 282 DGGMLFLDEIGELGADEQ---------------AMLLKAIEEKRFYPFGSDRQVSSDFQLIAGTVRDLRQLVAEGKFRED 346 (531)
T ss_pred CCceEehHhhhhcCccHH---------------HHHHHHHHhhccCCCCCccccccchHHhhhhHHHHHHHHhccchHHH
Confidence 234999999988864422 234554442 11 12345566666542 112223
Q ss_pred hhCCCCcceEEEecCCCHHHHHHH--------HHHHHhcCC--CCCCCCCCHHHHHHhC-----CCCCHHHHHHHHHHHH
Q 007575 488 LRRPGRFDRVVMVETPDKIGREAI--------LKVHVSKKE--LPLAKDIDLGDIASMT-----TGFTGADLANLVNEAA 552 (597)
Q Consensus 488 LlRpgRFd~~I~v~~Pd~~eR~eI--------Lk~~l~~~~--~~l~~dvdl~~LA~~t-----~G~SgaDL~~Lv~eAa 552 (597)
|.- |+. ...|.+|...+|.+- |..|....+ +.+..+..-..|+-.+ ..-+-++|..-+.+.+
T Consensus 347 l~a--rin-lwtf~lpgl~qr~ediepnldyelerha~~~g~~vrfntearra~l~fa~spqa~w~gnfrelsasvtrma 423 (531)
T COG4650 347 LYA--RIN-LWTFTLPGLRQRQEDIEPNLDYELERHASLTGDSVRFNTEARRAWLAFATSPQATWRGNFRELSASVTRMA 423 (531)
T ss_pred HHH--hhh-eeeeeccccccCccccCCCccHHHHHHHHhhCceeeeehHHHHHHHHhccCcchhhcccHHHHhHHHHHHH
Confidence 322 333 457788888777643 233333221 1111111111222111 1223477877777777
Q ss_pred HHHHhcCCCcccHHHHHHHHHHH
Q 007575 553 LLAGRLNKVVVEKIDFIHAVERS 575 (597)
Q Consensus 553 l~A~r~~~~~It~~d~~~Al~~v 575 (597)
.+| +...|+.+-+++.+.+.
T Consensus 424 tla---d~grit~~~ve~ei~rl 443 (531)
T COG4650 424 TLA---DSGRITLDVVEDEINRL 443 (531)
T ss_pred HHh---cCCceeHHHHHHHHHHH
Confidence 776 44567776666665554
No 316
>PRK13948 shikimate kinase; Provisional
Probab=97.39 E-value=0.00054 Score=67.16 Aligned_cols=43 Identities=30% Similarity=0.491 Sum_probs=35.1
Q ss_pred CCCCceEEeCCCCChHHHHHHHHHHhcCCCeeeechhhhHHHHhh
Q 007575 363 RPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFVELYVG 407 (597)
Q Consensus 363 ~~p~gVLL~GPPGTGKT~LArAIA~el~~pfi~is~sef~~~~vG 407 (597)
+++..|+|.|.+|+|||++++.+|..++.+|+..+ .+.+...|
T Consensus 8 ~~~~~I~LiG~~GsGKSTvg~~La~~lg~~~iD~D--~~ie~~~g 50 (182)
T PRK13948 8 RPVTWVALAGFMGTGKSRIGWELSRALMLHFIDTD--RYIERVTG 50 (182)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHcCCCEEECC--HHHHHHHh
Confidence 45678999999999999999999999999998654 44444444
No 317
>PF06309 Torsin: Torsin; InterPro: IPR010448 This family consists of several eukaryotic torsin proteins. Torsion dystonia is an autosomal dominant movement disorder characterised by involuntary, repetitive muscle contractions and twisted postures. The most severe early-onset form of dystonia has been linked to mutations in the human DYT1 (TOR1A) gene encoding a protein termed torsinA. While causative genetic alterations have been identified, the function of torsin proteins and the molecular mechanism underlying dystonia remain unknown. Phylogenetic analysis of the torsin protein family indicates these proteins share distant sequence similarity with the large and diverse family of AAA ATPase, central region containing proteins () proteins. It has been suggested that torsins play a role in effectively managing protein folding and that possible breakdown in a neuroprotective mechanism that is, in part, mediated by torsins may be responsible for the neuronal dysfunction associated with dystonia [].; GO: 0005524 ATP binding, 0051085 chaperone mediated protein folding requiring cofactor
Probab=97.35 E-value=0.00062 Score=62.88 Aligned_cols=51 Identities=25% Similarity=0.394 Sum_probs=39.6
Q ss_pred cccCChHHHHHHHHHHHH-hcChhHHhhcCCCCCCceEEeCCCCChHHHHHHHHHHhc
Q 007575 333 DVAGVDEAKEELEEIVEF-LRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEA 389 (597)
Q Consensus 333 dV~G~de~k~~L~eiv~~-l~~p~~~~~lg~~~p~gVLL~GPPGTGKT~LArAIA~el 389 (597)
.|.|++-+++.+...+.. +.++ ..+.|.-+-|+|+||||||.+++.||+.+
T Consensus 26 ~l~GQhla~~~v~~ai~~~l~~~------~p~KpLVlSfHG~tGtGKn~v~~liA~~l 77 (127)
T PF06309_consen 26 NLFGQHLAVEVVVNAIKGHLANP------NPRKPLVLSFHGWTGTGKNFVSRLIAEHL 77 (127)
T ss_pred HccCcHHHHHHHHHHHHHHHcCC------CCCCCEEEEeecCCCCcHHHHHHHHHHHH
Confidence 689999999888887765 4332 23345556699999999999999999974
No 318
>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....
Probab=97.34 E-value=0.0008 Score=67.25 Aligned_cols=97 Identities=23% Similarity=0.221 Sum_probs=57.8
Q ss_pred CCCCCCceEEeCCCCChHHHHHHHHHHhc----CCCeeeechhhhHH----H----------Hh----------------
Q 007575 361 GARPPRGVLLVGLPGTGKTLLAKAVAGEA----EVPFISCSASEFVE----L----------YV---------------- 406 (597)
Q Consensus 361 g~~~p~gVLL~GPPGTGKT~LArAIA~el----~~pfi~is~sef~~----~----------~v---------------- 406 (597)
|.+.+..+|++||||||||+|+..++.+. |-++++++..+-.+ . +.
T Consensus 15 Gip~gs~~li~G~~GsGKT~l~~q~l~~~~~~~ge~vlyvs~ee~~~~l~~~~~s~g~d~~~~~~~g~l~~~d~~~~~~~ 94 (226)
T PF06745_consen 15 GIPKGSVVLISGPPGSGKTTLALQFLYNGLKNFGEKVLYVSFEEPPEELIENMKSFGWDLEEYEDSGKLKIIDAFPERIG 94 (226)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHHHHHHT--EEEEESSS-HHHHHHHHHTTTS-HHHHHHTTSEEEEESSGGGST
T ss_pred CCCCCcEEEEEeCCCCCcHHHHHHHHHHhhhhcCCcEEEEEecCCHHHHHHHHHHcCCcHHHHhhcCCEEEEeccccccc
Confidence 66777789999999999999999876432 67766665432211 1 00
Q ss_pred ---hcchHHHHHHHHHHHhcCCeEEEEcCcchhhhhcCCcccccchhHHHHHHHHHHHHhc
Q 007575 407 ---GMGASRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMD 464 (597)
Q Consensus 407 ---G~~e~~vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~eqtLnqLL~emd 464 (597)
.........+.+......+++++||-+..+. .. .........+..|...+.
T Consensus 95 ~~~~~~~~l~~~i~~~i~~~~~~~vVIDsls~l~-~~------~~~~~~r~~l~~l~~~l~ 148 (226)
T PF06745_consen 95 WSPNDLEELLSKIREAIEELKPDRVVIDSLSALL-LY------DDPEELRRFLRALIKFLK 148 (226)
T ss_dssp -TSCCHHHHHHHHHHHHHHHTSSEEEEETHHHHT-TS------SSGGGHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHHHHhcCCCEEEEECHHHHh-hc------CCHHHHHHHHHHHHHHHH
Confidence 0011222334444455677899999999982 22 123344556666766664
No 319
>PRK09376 rho transcription termination factor Rho; Provisional
Probab=97.33 E-value=0.00082 Score=73.07 Aligned_cols=23 Identities=35% Similarity=0.515 Sum_probs=20.9
Q ss_pred eEEeCCCCChHHHHHHHHHHhcC
Q 007575 368 VLLVGLPGTGKTLLAKAVAGEAE 390 (597)
Q Consensus 368 VLL~GPPGTGKT~LArAIA~el~ 390 (597)
.||+||||+|||+|++.|++...
T Consensus 172 ~lIvgppGvGKTTLaK~Ian~I~ 194 (416)
T PRK09376 172 GLIVAPPKAGKTVLLQNIANSIT 194 (416)
T ss_pred EEEeCCCCCChhHHHHHHHHHHH
Confidence 89999999999999999998653
No 320
>PF06480 FtsH_ext: FtsH Extracellular; InterPro: IPR011546 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This domain is found in the FtsH family of proteins that include FtsH a membrane-bound ATP-dependent protease universally conserved in prokaryotes []. The FtsH peptidases, which belong to MEROPS peptidase family M41 (clan MA(E)), efficiently degrade proteins that have a low thermodynamic stability - e.g. they lack robust unfoldase activity. This feature may be key and implies that this could be a criterion for degrading a protein. In Oenococcus oeni (Leuconostoc oenos) FtsH is involved in protection against environmental stress [], and shows increased expression under heat or osmotic stress. These two lines of evidence suggest that it is a fundamental prokaryotic self-protection mechanism that checks if proteins are correctly folded. The precise function of this N-terminal region is unclear. ; GO: 0004222 metalloendopeptidase activity, 0005524 ATP binding, 0008270 zinc ion binding, 0016021 integral to membrane; PDB: 2LNA_A.
Probab=97.32 E-value=0.00012 Score=63.98 Aligned_cols=30 Identities=27% Similarity=0.450 Sum_probs=23.8
Q ss_pred ccceeehHHHHHHHHcCCccEEEEeCcEEE
Q 007575 179 TFVSVPYSDFLSKINSNQVAKVEVDGVHIM 208 (597)
Q Consensus 179 ~~~~~~y~~f~~~~~~~~v~~v~~~~~~~~ 208 (597)
...+++||+|+++|++|+|++|++.++.+.
T Consensus 26 ~~~~i~YS~F~~~l~~g~V~~V~i~~~~~~ 55 (110)
T PF06480_consen 26 QTKEISYSEFLQMLEKGNVKKVVIQNDKIT 55 (110)
T ss_dssp SSEE--HHHHHHTGGGT-EEEEEEETTTEE
T ss_pred CCcEECHHHHHHHHHcCCEEEEEEECCEEE
Confidence 456899999999999999999999987666
No 321
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=97.32 E-value=0.00088 Score=65.41 Aligned_cols=35 Identities=29% Similarity=0.530 Sum_probs=27.3
Q ss_pred ceEEeCCCCChHHHHHHHHHHhcCCCeeeechhhhHH
Q 007575 367 GVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFVE 403 (597)
Q Consensus 367 gVLL~GPPGTGKT~LArAIA~el~~pfi~is~sef~~ 403 (597)
.|+|.||||+||||+|+.||+.+ ++..++..++..
T Consensus 2 riiilG~pGaGK~T~A~~La~~~--~i~hlstgd~~r 36 (178)
T COG0563 2 RILILGPPGAGKSTLAKKLAKKL--GLPHLDTGDILR 36 (178)
T ss_pred eEEEECCCCCCHHHHHHHHHHHh--CCcEEcHhHHhH
Confidence 48999999999999999999994 444555444433
No 322
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=97.30 E-value=0.00058 Score=65.16 Aligned_cols=105 Identities=22% Similarity=0.217 Sum_probs=60.4
Q ss_pred CCCCCceEEeCCCCChHHHHHHHHHHhcCC--Ceeeechhh--------hHHHHhhc-----chHHHHHHHHHHHhcCCe
Q 007575 362 ARPPRGVLLVGLPGTGKTLLAKAVAGEAEV--PFISCSASE--------FVELYVGM-----GASRVRDLFARAKKEAPS 426 (597)
Q Consensus 362 ~~~p~gVLL~GPPGTGKT~LArAIA~el~~--pfi~is~se--------f~~~~vG~-----~e~~vr~lF~~A~~~aP~ 426 (597)
..+...+.|.||+|+|||+|.+.+++.... --+.+++.+ .....++. +..+.+-.+..|....|.
T Consensus 23 i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~v~~~g~~~~~~~~~~~~~~~i~~~~qLS~G~~qrl~laral~~~p~ 102 (163)
T cd03216 23 VRRGEVHALLGENGAGKSTLMKILSGLYKPDSGEILVDGKEVSFASPRDARRAGIAMVYQLSVGERQMVEIARALARNAR 102 (163)
T ss_pred EeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEECCcCCHHHHHhcCeEEEEecCHHHHHHHHHHHHHhcCCC
Confidence 345556899999999999999999987521 011222111 11111111 122445556777778899
Q ss_pred EEEEcCcchhhhhcCCcccccchhHHHHHHHHHHHHhcCCCCCCcEEEEEecCCC
Q 007575 427 IIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATNRS 481 (597)
Q Consensus 427 ILfIDEIDaL~~~r~~~~~~~~~~e~eqtLnqLL~emdg~~~~~~VIVIaaTNrp 481 (597)
+|++||--. +.+....+.+.+++.++.. . +..+|.+|+..
T Consensus 103 illlDEP~~-----------~LD~~~~~~l~~~l~~~~~---~-~~tiii~sh~~ 142 (163)
T cd03216 103 LLILDEPTA-----------ALTPAEVERLFKVIRRLRA---Q-GVAVIFISHRL 142 (163)
T ss_pred EEEEECCCc-----------CCCHHHHHHHHHHHHHHHH---C-CCEEEEEeCCH
Confidence 999999743 2233444555566655531 2 33455566654
No 323
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=97.30 E-value=0.00033 Score=69.18 Aligned_cols=67 Identities=24% Similarity=0.405 Sum_probs=43.6
Q ss_pred ceEEeCCCCChHHHHHHHHHHhcCCC----eeeechh-hhHH---------HHhhcchHHHHHHHHHHHhcCCeEEEEcC
Q 007575 367 GVLLVGLPGTGKTLLAKAVAGEAEVP----FISCSAS-EFVE---------LYVGMGASRVRDLFARAKKEAPSIIFIDE 432 (597)
Q Consensus 367 gVLL~GPPGTGKT~LArAIA~el~~p----fi~is~s-ef~~---------~~vG~~e~~vr~lF~~A~~~aP~ILfIDE 432 (597)
-++|+||+|+|||+++++++++...+ ++.+..+ ++.. .-+|.......+.++.+....|.+|++||
T Consensus 3 lilI~GptGSGKTTll~~ll~~~~~~~~~~i~t~e~~~E~~~~~~~~~i~q~~vg~~~~~~~~~i~~aLr~~pd~ii~gE 82 (198)
T cd01131 3 LVLVTGPTGSGKSTTLAAMIDYINKNKTHHILTIEDPIEFVHESKRSLINQREVGLDTLSFENALKAALRQDPDVILVGE 82 (198)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhhhcCCcEEEEEcCCccccccCccceeeecccCCCccCHHHHHHHHhcCCcCEEEEcC
Confidence 37899999999999999998876422 2222111 1110 01122233456667777778899999999
Q ss_pred c
Q 007575 433 I 433 (597)
Q Consensus 433 I 433 (597)
+
T Consensus 83 i 83 (198)
T cd01131 83 M 83 (198)
T ss_pred C
Confidence 8
No 324
>cd00464 SK Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic pathway which converts erythrose-4-phosphate to chorismic acid, found in bacteria, fungi and plants. Chorismic acid is a important intermediate in the synthesis of aromatic compounds, such as aromatic amino acids, p-aminobenzoic acid, folate and ubiquinone. Shikimate kinase catalyses the phosphorylation of the 3-hydroxyl group of shikimic acid using ATP.
Probab=97.29 E-value=0.00043 Score=64.29 Aligned_cols=39 Identities=31% Similarity=0.659 Sum_probs=31.5
Q ss_pred ceEEeCCCCChHHHHHHHHHHhcCCCeeeechhhhHHHHhh
Q 007575 367 GVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFVELYVG 407 (597)
Q Consensus 367 gVLL~GPPGTGKT~LArAIA~el~~pfi~is~sef~~~~vG 407 (597)
+|+|+|+||+|||++|+.+|.+++.+++..+ ++.....+
T Consensus 1 ~i~l~G~~GsGKstla~~la~~l~~~~~~~d--~~~~~~~~ 39 (154)
T cd00464 1 NIVLIGMMGAGKTTVGRLLAKALGLPFVDLD--ELIEQRAG 39 (154)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHhCCCEEEch--HHHHHHcC
Confidence 4899999999999999999999999988554 44444433
No 325
>PRK12339 2-phosphoglycerate kinase; Provisional
Probab=97.29 E-value=0.0043 Score=61.58 Aligned_cols=30 Identities=23% Similarity=0.450 Sum_probs=26.3
Q ss_pred CCceEEeCCCCChHHHHHHHHHHhcCCCee
Q 007575 365 PRGVLLVGLPGTGKTLLAKAVAGEAEVPFI 394 (597)
Q Consensus 365 p~gVLL~GPPGTGKT~LArAIA~el~~pfi 394 (597)
+.-+++.|+||+|||++|+.+|.+++.+++
T Consensus 3 ~~~i~i~G~~G~GKst~a~~l~~~~~~~~~ 32 (197)
T PRK12339 3 STIHFIGGIPGVGKTSISGYIARHRAIDIV 32 (197)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhcCCeEE
Confidence 446899999999999999999999987653
No 326
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=97.28 E-value=0.00031 Score=68.49 Aligned_cols=71 Identities=25% Similarity=0.360 Sum_probs=46.4
Q ss_pred CCCceEEeCCCCChHHHHHHHHHHhcCC--Ceeeechh-hhHH---H----------HhhcchHHHHHHHHHHHhcCCeE
Q 007575 364 PPRGVLLVGLPGTGKTLLAKAVAGEAEV--PFISCSAS-EFVE---L----------YVGMGASRVRDLFARAKKEAPSI 427 (597)
Q Consensus 364 ~p~gVLL~GPPGTGKT~LArAIA~el~~--pfi~is~s-ef~~---~----------~vG~~e~~vr~lF~~A~~~aP~I 427 (597)
....++|.||+|+|||++++++++.... ..+.+... ++.- . ..+.......++++.+....|.+
T Consensus 24 ~g~~i~I~G~tGSGKTTll~aL~~~i~~~~~~i~ied~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~lR~~pd~ 103 (186)
T cd01130 24 ARKNILISGGTGSGKTTLLNALLAFIPPDERIITIEDTAELQLPHPNWVRLVTRPGNVEGSGEVTMADLLRSALRMRPDR 103 (186)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhcCCCCCEEEECCccccCCCCCCEEEEEEecCCCCCCCccCHHHHHHHHhccCCCE
Confidence 3457999999999999999999987631 22222111 1100 0 00112245677888888889999
Q ss_pred EEEcCcc
Q 007575 428 IFIDEID 434 (597)
Q Consensus 428 LfIDEID 434 (597)
|+++|+-
T Consensus 104 i~igEir 110 (186)
T cd01130 104 IIVGEVR 110 (186)
T ss_pred EEEEccC
Confidence 9999983
No 327
>PRK14974 cell division protein FtsY; Provisional
Probab=97.28 E-value=0.0016 Score=69.75 Aligned_cols=73 Identities=25% Similarity=0.338 Sum_probs=45.0
Q ss_pred CCCceEEeCCCCChHHHHHHHHHHhc---CCCeeeechhhh-------HHHH---hh----------cchHHHHHHHHHH
Q 007575 364 PPRGVLLVGLPGTGKTLLAKAVAGEA---EVPFISCSASEF-------VELY---VG----------MGASRVRDLFARA 420 (597)
Q Consensus 364 ~p~gVLL~GPPGTGKT~LArAIA~el---~~pfi~is~sef-------~~~~---vG----------~~e~~vr~lF~~A 420 (597)
.|.-++|+||||+|||+++..+|..+ +..+..++++.+ ...+ .| .....+.+.++.+
T Consensus 139 ~~~vi~~~G~~GvGKTTtiakLA~~l~~~g~~V~li~~Dt~R~~a~eqL~~~a~~lgv~v~~~~~g~dp~~v~~~ai~~~ 218 (336)
T PRK14974 139 KPVVIVFVGVNGTGKTTTIAKLAYYLKKNGFSVVIAAGDTFRAGAIEQLEEHAERLGVKVIKHKYGADPAAVAYDAIEHA 218 (336)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEecCCcCcHHHHHHHHHHHHHcCCceecccCCCCHHHHHHHHHHHH
Confidence 46789999999999999888887654 455544554422 1111 11 0112334555555
Q ss_pred HhcCCeEEEEcCcchh
Q 007575 421 KKEAPSIIFIDEIDAV 436 (597)
Q Consensus 421 ~~~aP~ILfIDEIDaL 436 (597)
+....++|+||....+
T Consensus 219 ~~~~~DvVLIDTaGr~ 234 (336)
T PRK14974 219 KARGIDVVLIDTAGRM 234 (336)
T ss_pred HhCCCCEEEEECCCcc
Confidence 5555679999998554
No 328
>PRK13946 shikimate kinase; Provisional
Probab=97.25 E-value=0.00093 Score=65.04 Aligned_cols=34 Identities=35% Similarity=0.624 Sum_probs=31.1
Q ss_pred CCCceEEeCCCCChHHHHHHHHHHhcCCCeeeec
Q 007575 364 PPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCS 397 (597)
Q Consensus 364 ~p~gVLL~GPPGTGKT~LArAIA~el~~pfi~is 397 (597)
.++.|+|.|+||+|||++++.+|..+|.||+..+
T Consensus 9 ~~~~I~l~G~~GsGKsti~~~LA~~Lg~~~id~D 42 (184)
T PRK13946 9 GKRTVVLVGLMGAGKSTVGRRLATMLGLPFLDAD 42 (184)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHcCCCeECcC
Confidence 4568999999999999999999999999998765
No 329
>PF07693 KAP_NTPase: KAP family P-loop domain; InterPro: IPR011646 The KAP (after Kidins220/ARMS and PifA) family of predicted NTPases are sporadically distributed across a wide phylogenetic range in bacteria and in animals. Many of the prokaryotic KAP NTPases are encoded in plasmids and tend to undergo disruption to form pseudogenes. A unique feature of all eukaryotic and certain bacterial KAP NTPases is the presence of two or four transmembrane helices inserted into the P-loop NTPase domain. These transmembrane helices anchor KAP NTPases in the membrane such that the P-loop domain is located on the intracellular side [].
Probab=97.25 E-value=0.0086 Score=62.71 Aligned_cols=78 Identities=17% Similarity=0.218 Sum_probs=48.7
Q ss_pred CCeEEEEcCcchhhhhcCCcccccchhHHHHHHHHHHHHhcCCCCCCcEEEEEecCCCCCCC----------------hh
Q 007575 424 APSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATNRSDVLD----------------PA 487 (597)
Q Consensus 424 aP~ILfIDEIDaL~~~r~~~~~~~~~~e~eqtLnqLL~emdg~~~~~~VIVIaaTNrpd~LD----------------~a 487 (597)
.+-||+|||+|.+.+. + +.+++..+.-+-...++++|.+.++. .+. ..
T Consensus 172 ~~iViiIDdLDR~~~~-----------~----i~~~l~~ik~~~~~~~i~~Il~~D~~-~l~~ai~~~~~~~~~~~~~~~ 235 (325)
T PF07693_consen 172 KRIVIIIDDLDRCSPE-----------E----IVELLEAIKLLLDFPNIIFILAFDPE-ILEKAIEKNYGEGFDEIDGRE 235 (325)
T ss_pred ceEEEEEcchhcCCcH-----------H----HHHHHHHHHHhcCCCCeEEEEEecHH-HHHHHHHhhcCcccccccHHH
Confidence 4669999999998432 1 23344444333344667777777642 111 12
Q ss_pred hhCCCCcceEEEecCCCHHHHHHHHHHHHhc
Q 007575 488 LRRPGRFDRVVMVETPDKIGREAILKVHVSK 518 (597)
Q Consensus 488 LlRpgRFd~~I~v~~Pd~~eR~eILk~~l~~ 518 (597)
.+.. -|+..+.+|.|+..+...++...+..
T Consensus 236 yLeK-iiq~~~~lP~~~~~~~~~~~~~~~~~ 265 (325)
T PF07693_consen 236 YLEK-IIQVPFSLPPPSPSDLERYLNELLES 265 (325)
T ss_pred HHHh-hcCeEEEeCCCCHHHHHHHHHHHHHH
Confidence 2220 46788999999999888888877553
No 330
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=97.25 E-value=0.00059 Score=73.13 Aligned_cols=69 Identities=23% Similarity=0.375 Sum_probs=46.1
Q ss_pred CceEEeCCCCChHHHHHHHHHHhcCC----Ceeeec-hhhhHH---------HHhhcchHHHHHHHHHHHhcCCeEEEEc
Q 007575 366 RGVLLVGLPGTGKTLLAKAVAGEAEV----PFISCS-ASEFVE---------LYVGMGASRVRDLFARAKKEAPSIIFID 431 (597)
Q Consensus 366 ~gVLL~GPPGTGKT~LArAIA~el~~----pfi~is-~sef~~---------~~vG~~e~~vr~lF~~A~~~aP~ILfID 431 (597)
..++++||+|+|||++++++.++... .++.+. ..++.. .-+|.......+.++.+....|.+|++|
T Consensus 123 g~ili~G~tGSGKTT~l~al~~~i~~~~~~~i~tiEdp~E~~~~~~~~~i~q~evg~~~~~~~~~l~~~lr~~pd~i~vg 202 (343)
T TIGR01420 123 GLILVTGPTGSGKSTTLASMIDYINKNAAGHIITIEDPIEYVHRNKRSLINQREVGLDTLSFANALRAALREDPDVILIG 202 (343)
T ss_pred cEEEEECCCCCCHHHHHHHHHHhhCcCCCCEEEEEcCChhhhccCccceEEccccCCCCcCHHHHHHHhhccCCCEEEEe
Confidence 46899999999999999999887642 233321 112110 0123222345677778888999999999
Q ss_pred Ccc
Q 007575 432 EID 434 (597)
Q Consensus 432 EID 434 (597)
|+-
T Consensus 203 Eir 205 (343)
T TIGR01420 203 EMR 205 (343)
T ss_pred CCC
Confidence 983
No 331
>PRK13947 shikimate kinase; Provisional
Probab=97.25 E-value=0.00027 Score=67.20 Aligned_cols=31 Identities=39% Similarity=0.615 Sum_probs=28.7
Q ss_pred ceEEeCCCCChHHHHHHHHHHhcCCCeeeec
Q 007575 367 GVLLVGLPGTGKTLLAKAVAGEAEVPFISCS 397 (597)
Q Consensus 367 gVLL~GPPGTGKT~LArAIA~el~~pfi~is 397 (597)
+|+|.|+||+|||++++.+|..++.+|+..+
T Consensus 3 ~I~l~G~~GsGKst~a~~La~~lg~~~id~d 33 (171)
T PRK13947 3 NIVLIGFMGTGKTTVGKRVATTLSFGFIDTD 33 (171)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHhCCCEEECc
Confidence 6999999999999999999999999997654
No 332
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=97.24 E-value=0.0012 Score=67.71 Aligned_cols=38 Identities=26% Similarity=0.249 Sum_probs=28.6
Q ss_pred CCCCCCceEEeCCCCChHHHHHHHHHHhc----CCCeeeech
Q 007575 361 GARPPRGVLLVGLPGTGKTLLAKAVAGEA----EVPFISCSA 398 (597)
Q Consensus 361 g~~~p~gVLL~GPPGTGKT~LArAIA~el----~~pfi~is~ 398 (597)
|..+..-++|.||||+|||+++..++..+ +.+++.++.
T Consensus 26 G~~~g~~~~i~g~~G~GKT~l~~~~~~~~~~~~g~~vl~iS~ 67 (271)
T cd01122 26 GLRKGELIILTAGTGVGKTTFLREYALDLITQHGVRVGTISL 67 (271)
T ss_pred EEcCCcEEEEEcCCCCCHHHHHHHHHHHHHHhcCceEEEEEc
Confidence 45556678999999999999999887653 556655554
No 333
>PLN02674 adenylate kinase
Probab=97.24 E-value=0.0015 Score=67.00 Aligned_cols=40 Identities=20% Similarity=0.488 Sum_probs=31.8
Q ss_pred CCCCceEEeCCCCChHHHHHHHHHHhcCCCeeeechhhhHHH
Q 007575 363 RPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFVEL 404 (597)
Q Consensus 363 ~~p~gVLL~GPPGTGKT~LArAIA~el~~pfi~is~sef~~~ 404 (597)
+++..++|.||||+||+++|+.+|..++++.++ ..+++..
T Consensus 29 ~~~~~i~l~G~PGsGKgT~a~~La~~~~~~his--~GdllR~ 68 (244)
T PLN02674 29 KPDKRLILIGPPGSGKGTQSPIIKDEYCLCHLA--TGDMLRA 68 (244)
T ss_pred ccCceEEEECCCCCCHHHHHHHHHHHcCCcEEc--hhHHHHH
Confidence 345679999999999999999999999876654 4555443
No 334
>PRK09354 recA recombinase A; Provisional
Probab=97.23 E-value=0.0013 Score=70.74 Aligned_cols=78 Identities=24% Similarity=0.260 Sum_probs=49.6
Q ss_pred CCCCCCceEEeCCCCChHHHHHHHHHHh---cCCCeeeechhhhHHH-H---hh------------cchHHHHHHHHHHH
Q 007575 361 GARPPRGVLLVGLPGTGKTLLAKAVAGE---AEVPFISCSASEFVEL-Y---VG------------MGASRVRDLFARAK 421 (597)
Q Consensus 361 g~~~p~gVLL~GPPGTGKT~LArAIA~e---l~~pfi~is~sef~~~-~---vG------------~~e~~vr~lF~~A~ 421 (597)
|.+...-++|+||||||||+|+-.++.+ .+...++++..+-... + .| ..+..+..+-...+
T Consensus 56 Gip~G~IteI~G~~GsGKTtLal~~~~~~~~~G~~~~yId~E~s~~~~~a~~lGvdld~lli~qp~~~Eq~l~i~~~li~ 135 (349)
T PRK09354 56 GLPRGRIVEIYGPESSGKTTLALHAIAEAQKAGGTAAFIDAEHALDPVYAKKLGVDIDNLLVSQPDTGEQALEIADTLVR 135 (349)
T ss_pred CCcCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEECCccchHHHHHHHcCCCHHHeEEecCCCHHHHHHHHHHHhh
Confidence 4555667889999999999999987654 3666676665432221 0 01 11222222223345
Q ss_pred hcCCeEEEEcCcchhhh
Q 007575 422 KEAPSIIFIDEIDAVAK 438 (597)
Q Consensus 422 ~~aP~ILfIDEIDaL~~ 438 (597)
...+.+|+||-+-++.+
T Consensus 136 s~~~~lIVIDSvaaL~~ 152 (349)
T PRK09354 136 SGAVDLIVVDSVAALVP 152 (349)
T ss_pred cCCCCEEEEeChhhhcc
Confidence 56788999999999875
No 335
>KOG2228 consensus Origin recognition complex, subunit 4 [Replication, recombination and repair]
Probab=97.20 E-value=0.0027 Score=67.30 Aligned_cols=159 Identities=21% Similarity=0.337 Sum_probs=94.8
Q ss_pred ccCChHHHHHHHHHHHHhcChhHHhhcCCCCCCceEEeCCCCChHHHHHHHH-HH--hcCCCeeeechhhhHHH------
Q 007575 334 VAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAV-AG--EAEVPFISCSASEFVEL------ 404 (597)
Q Consensus 334 V~G~de~k~~L~eiv~~l~~p~~~~~lg~~~p~gVLL~GPPGTGKT~LArAI-A~--el~~pfi~is~sef~~~------ 404 (597)
+.|..+....|.+++..-.- ......|++.||.|+|||.+.... +. +.|-.|+.+....++..
T Consensus 26 l~g~~~~~~~l~~~lkqt~~--------~gEsnsviiigprgsgkT~li~~~Ls~~q~~~E~~l~v~Lng~~~~dk~al~ 97 (408)
T KOG2228|consen 26 LFGVQDEQKHLSELLKQTIL--------HGESNSVIIIGPRGSGKTILIDTRLSDIQENGENFLLVRLNGELQTDKIALK 97 (408)
T ss_pred eeehHHHHHHHHHHHHHHHH--------hcCCCceEEEccCCCCceEeeHHHHhhHHhcCCeEEEEEECccchhhHHHHH
Confidence 57777777888888765110 123457999999999999776544 33 66777776654322111
Q ss_pred ---------------HhhcchHHHHHHHHHHHhc-----CCeEEEEcCcchhhhhcCCcccccchhHHHHHH-HHHHHHh
Q 007575 405 ---------------YVGMGASRVRDLFARAKKE-----APSIIFIDEIDAVAKSRDGRFRIVSNDEREQTL-NQLLTEM 463 (597)
Q Consensus 405 ---------------~vG~~e~~vr~lF~~A~~~-----aP~ILfIDEIDaL~~~r~~~~~~~~~~e~eqtL-nqLL~em 463 (597)
..|.....+..++...+.. .+.|.++||||..+... +|++ ..|+..-
T Consensus 98 ~I~rql~~e~~~~~k~~gsfte~l~~lL~~L~~~~~~t~~~ViFIldEfDlf~~h~------------rQtllYnlfDis 165 (408)
T KOG2228|consen 98 GITRQLALELNRIVKSFGSFTENLSKLLEALKKGDETTSGKVIFILDEFDLFAPHS------------RQTLLYNLFDIS 165 (408)
T ss_pred HHHHHHHHHHhhhheeecccchhHHHHHHHHhcCCCCCCceEEEEeehhhccccch------------hhHHHHHHHHHH
Confidence 1233333444444444332 23344467999876432 2333 2333322
Q ss_pred cCCCCCCcEEEEEecCCCCCC---ChhhhCCCCcceE-EEecCC-CHHHHHHHHHHHH
Q 007575 464 DGFDSNSAVIVLGATNRSDVL---DPALRRPGRFDRV-VMVETP-DKIGREAILKVHV 516 (597)
Q Consensus 464 dg~~~~~~VIVIaaTNrpd~L---D~aLlRpgRFd~~-I~v~~P-d~~eR~eILk~~l 516 (597)
+ ....+|.||+.|.+-+.+ .....+ ||... |++.++ ...+..++++..+
T Consensus 166 q--s~r~Piciig~Ttrld~lE~LEKRVKS--RFshr~I~m~~~~~l~~yv~l~r~ll 219 (408)
T KOG2228|consen 166 Q--SARAPICIIGVTTRLDILELLEKRVKS--RFSHRVIFMLPSLPLGDYVDLYRKLL 219 (408)
T ss_pred h--hcCCCeEEEEeeccccHHHHHHHHHHh--hcccceeeccCCCChHHHHHHHHHHh
Confidence 2 235678999999887665 567777 99654 555443 5778888888776
No 336
>PRK03839 putative kinase; Provisional
Probab=97.19 E-value=0.00028 Score=67.99 Aligned_cols=31 Identities=26% Similarity=0.488 Sum_probs=28.2
Q ss_pred ceEEeCCCCChHHHHHHHHHHhcCCCeeeec
Q 007575 367 GVLLVGLPGTGKTLLAKAVAGEAEVPFISCS 397 (597)
Q Consensus 367 gVLL~GPPGTGKT~LArAIA~el~~pfi~is 397 (597)
.|+|.|+||+|||++++.+|+.++.+|+.++
T Consensus 2 ~I~l~G~pGsGKsT~~~~La~~~~~~~id~d 32 (180)
T PRK03839 2 IIAITGTPGVGKTTVSKLLAEKLGYEYVDLT 32 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEEehh
Confidence 3899999999999999999999999997654
No 337
>PRK04841 transcriptional regulator MalT; Provisional
Probab=97.19 E-value=0.0046 Score=73.61 Aligned_cols=151 Identities=20% Similarity=0.303 Sum_probs=82.0
Q ss_pred CceEEeCCCCChHHHHHHHHHHhcCCCe--eeechhh-----hHHH----Hh----hc-----------c----hHHHHH
Q 007575 366 RGVLLVGLPGTGKTLLAKAVAGEAEVPF--ISCSASE-----FVEL----YV----GM-----------G----ASRVRD 415 (597)
Q Consensus 366 ~gVLL~GPPGTGKT~LArAIA~el~~pf--i~is~se-----f~~~----~v----G~-----------~----e~~vr~ 415 (597)
+-++|+||+|.|||+++...+...+ ++ ++++..+ |... .. +. . ...+..
T Consensus 33 ~~~~v~apaG~GKTtl~~~~~~~~~-~~~w~~l~~~d~~~~~f~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 111 (903)
T PRK04841 33 RLVLVTSPAGYGKTTLISQWAAGKN-NLGWYSLDESDNQPERFASYLIAALQQATNGHCSKSEALAQKRQYASLSSLFAQ 111 (903)
T ss_pred CeEEEECCCCCCHHHHHHHHHHhCC-CeEEEecCcccCCHHHHHHHHHHHHHHhcCcccchhhhhhccCCcCCHHHHHHH
Confidence 4589999999999999999887665 44 4443221 1111 00 00 0 011223
Q ss_pred HHHHHHh-cCCeEEEEcCcchhhhhcCCcccccchhHHHHHHHHHHHHhcCCCCCCcEEEEEecCCCCCCC-hhhhCCCC
Q 007575 416 LFARAKK-EAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATNRSDVLD-PALRRPGR 493 (597)
Q Consensus 416 lF~~A~~-~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~eqtLnqLL~emdg~~~~~~VIVIaaTNrpd~LD-~aLlRpgR 493 (597)
++..... ..|.+|+|||+|.+.. ....+.+..|+..+ . ....+|| ++.....+. ..+...
T Consensus 112 ~~~~l~~~~~~~~lvlDD~h~~~~-----------~~~~~~l~~l~~~~---~-~~~~lv~-~sR~~~~~~~~~l~~~-- 173 (903)
T PRK04841 112 LFIELADWHQPLYLVIDDYHLITN-----------PEIHEAMRFFLRHQ---P-ENLTLVV-LSRNLPPLGIANLRVR-- 173 (903)
T ss_pred HHHHHhcCCCCEEEEEeCcCcCCC-----------hHHHHHHHHHHHhC---C-CCeEEEE-EeCCCCCCchHhHHhc--
Confidence 3333333 6789999999998731 12233444444433 2 2233334 443321222 122211
Q ss_pred cceEEEec----CCCHHHHHHHHHHHHhcCCCCCCCCCCHHHHHHhCCCCC
Q 007575 494 FDRVVMVE----TPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTTGFT 540 (597)
Q Consensus 494 Fd~~I~v~----~Pd~~eR~eILk~~l~~~~~~l~~dvdl~~LA~~t~G~S 540 (597)
+..+.+. ..+.+|-.+++...+. .++.++ +...|...|.|+.
T Consensus 174 -~~~~~l~~~~l~f~~~e~~~ll~~~~~---~~~~~~-~~~~l~~~t~Gwp 219 (903)
T PRK04841 174 -DQLLEIGSQQLAFDHQEAQQFFDQRLS---SPIEAA-ESSRLCDDVEGWA 219 (903)
T ss_pred -CcceecCHHhCCCCHHHHHHHHHhccC---CCCCHH-HHHHHHHHhCChH
Confidence 2234455 5688888888876543 344433 5788889998863
No 338
>PF10236 DAP3: Mitochondrial ribosomal death-associated protein 3; InterPro: IPR019368 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of conserved proteins which were originally described as death-associated-protein-3 (DAP-3). The proteins carry a P-loop DNA-binding motif, and induce apoptosis []. DAP3 has been shown to be a pro-apoptotic factor in the mitochondrial matrix [] and to be crucial for mitochondrial biogenesis and so has also been designated as MRP-S29 (mitochondrial ribosomal protein subunit 29).
Probab=97.18 E-value=0.016 Score=61.34 Aligned_cols=132 Identities=16% Similarity=0.152 Sum_probs=69.7
Q ss_pred HHHHHHHHh--c-CCeEEEEcCcchhhhhcCCc--ccccchhHHHHHHHHHHHHhcCCCC-CCcEEE--EEecCC---CC
Q 007575 414 RDLFARAKK--E-APSIIFIDEIDAVAKSRDGR--FRIVSNDEREQTLNQLLTEMDGFDS-NSAVIV--LGATNR---SD 482 (597)
Q Consensus 414 r~lF~~A~~--~-aP~ILfIDEIDaL~~~r~~~--~~~~~~~e~eqtLnqLL~emdg~~~-~~~VIV--IaaTNr---pd 482 (597)
..++++... . .|.++-||++.++.....-. ...-.+...-.....|+..+.+-.. ..+.+| +++|.. +.
T Consensus 143 ~~l~~EL~~~~~~~PVL~avD~~n~l~~~S~Y~~~~~~~I~~~~L~l~~~f~~~~s~~~~~~nG~~v~~l~~t~~~~~~~ 222 (309)
T PF10236_consen 143 QALIRELKAQSKRPPVLVAVDGFNALFGPSAYRDPDFKPIHPHDLTLVRLFLDLLSGKRDFKNGAVVTALAATSVSNAPK 222 (309)
T ss_pred HHHHHHHHhcccCCceEEEehhhHHhhCCccccCCCCccccHHHhhHHHHHHHHhcCccccCCCeEEEEEeccccccccC
Confidence 344444443 2 46677799999998652110 0011222333444555555443222 344444 555533 22
Q ss_pred --CCChhhhCCCC------cc-------------eEEEecCCCHHHHHHHHHHHHhcCCCCC--CCCCCHHHHHHhCCCC
Q 007575 483 --VLDPALRRPGR------FD-------------RVVMVETPDKIGREAILKVHVSKKELPL--AKDIDLGDIASMTTGF 539 (597)
Q Consensus 483 --~LD~aLlRpgR------Fd-------------~~I~v~~Pd~~eR~eILk~~l~~~~~~l--~~dvdl~~LA~~t~G~ 539 (597)
.++.+|....- |. ..+.++..+.+|-..+++.+....-+.- .+..-.+.+...+ |.
T Consensus 223 ~~~l~~~L~~~~~~~~~dPy~~~d~~~~~~l~~~~~i~v~~~s~~E~~~ll~yy~~~~~l~~~~~~~~~~e~~~~~s-~G 301 (309)
T PF10236_consen 223 SPTLPVALGGKEGFPHLDPYVKRDPRVAESLKGVKPIEVPRLSKEEARSLLEYYADSGWLRSRVDEELVLEKLFLSS-NG 301 (309)
T ss_pred CccchhhhccccCCCCCCCcccccHHHHHHhcCCceEEeCCCCHHHHHHHHHHHHHCCccccCCCCHHHHHHHHHhc-CC
Confidence 45666654211 11 2678999999999999999887643321 1222234444333 45
Q ss_pred CHHHHHH
Q 007575 540 TGADLAN 546 (597)
Q Consensus 540 SgaDL~~ 546 (597)
+++++..
T Consensus 302 Np~el~k 308 (309)
T PF10236_consen 302 NPRELEK 308 (309)
T ss_pred CHHHhcc
Confidence 7777754
No 339
>TIGR03574 selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents archaeal proteins with this activity.
Probab=97.17 E-value=0.0018 Score=65.94 Aligned_cols=36 Identities=31% Similarity=0.552 Sum_probs=29.2
Q ss_pred eEEeCCCCChHHHHHHHHHHhc---CCCeeeechhhhHH
Q 007575 368 VLLVGLPGTGKTLLAKAVAGEA---EVPFISCSASEFVE 403 (597)
Q Consensus 368 VLL~GPPGTGKT~LArAIA~el---~~pfi~is~sef~~ 403 (597)
|+|+|+||+|||++|++++..+ +.+++.++...+.+
T Consensus 2 Ivl~G~pGSGKST~a~~La~~l~~~~~~v~~i~~D~lr~ 40 (249)
T TIGR03574 2 IILTGLPGVGKSTFSKELAKKLSEKNIDVIILGTDLIRE 40 (249)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHcCCceEEEccHHHHH
Confidence 7899999999999999999876 56777776655533
No 340
>TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB. The TrbB protein is found in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer. TrbB is a homolog of the vir system VirB11 ATPase, and the Flp pilus sytem ATPase TadA.
Probab=97.17 E-value=0.00032 Score=73.93 Aligned_cols=70 Identities=26% Similarity=0.362 Sum_probs=47.9
Q ss_pred CCceEEeCCCCChHHHHHHHHHHhcC-----CCeeeech-hhhH-------HHHhhcchHHHHHHHHHHHhcCCeEEEEc
Q 007575 365 PRGVLLVGLPGTGKTLLAKAVAGEAE-----VPFISCSA-SEFV-------ELYVGMGASRVRDLFARAKKEAPSIIFID 431 (597)
Q Consensus 365 p~gVLL~GPPGTGKT~LArAIA~el~-----~pfi~is~-sef~-------~~~vG~~e~~vr~lF~~A~~~aP~ILfID 431 (597)
.+++|++||+|+|||+++++++++.. ..++.+.- .++. ....+.......++++.+....|+.|++.
T Consensus 132 ~~~ilI~G~tGSGKTTll~al~~~i~~~~~~~ri~tiEd~~El~~~~~~~v~~~~~~~~~~~~~~l~~aLR~~pD~iivG 211 (299)
T TIGR02782 132 RKNILVVGGTGSGKTTLANALLAEIAKNDPTDRVVIIEDTRELQCAAPNVVQLRTSDDAISMTRLLKATLRLRPDRIIVG 211 (299)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhhccCCCceEEEECCchhhcCCCCCEEEEEecCCCCCHHHHHHHHhcCCCCEEEEe
Confidence 35799999999999999999998752 22333321 1111 00112222267788999999999999999
Q ss_pred Ccc
Q 007575 432 EID 434 (597)
Q Consensus 432 EID 434 (597)
|+-
T Consensus 212 EiR 214 (299)
T TIGR02782 212 EVR 214 (299)
T ss_pred ccC
Confidence 983
No 341
>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT). Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.
Probab=97.16 E-value=0.0004 Score=66.87 Aligned_cols=39 Identities=26% Similarity=0.468 Sum_probs=33.3
Q ss_pred CceEEeCCCCChHHHHHHHHHHhcCCCeeeechhhhHHH
Q 007575 366 RGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFVEL 404 (597)
Q Consensus 366 ~gVLL~GPPGTGKT~LArAIA~el~~pfi~is~sef~~~ 404 (597)
+-++|.|+||+|||++|++++.+++.+++.++.+.+...
T Consensus 3 ~~i~l~G~~gsGKst~a~~l~~~~~~~~~~~~~D~~~~~ 41 (175)
T cd00227 3 RIIILNGGSSAGKSSIARALQSVLAEPWLHFGVDSFIEA 41 (175)
T ss_pred CEEEEECCCCCCHHHHHHHHHHhhCCCccccCccHHHHh
Confidence 458999999999999999999999988887777666443
No 342
>PRK00625 shikimate kinase; Provisional
Probab=97.15 E-value=0.00036 Score=67.81 Aligned_cols=31 Identities=39% Similarity=0.641 Sum_probs=28.9
Q ss_pred ceEEeCCCCChHHHHHHHHHHhcCCCeeeec
Q 007575 367 GVLLVGLPGTGKTLLAKAVAGEAEVPFISCS 397 (597)
Q Consensus 367 gVLL~GPPGTGKT~LArAIA~el~~pfi~is 397 (597)
.|+|+|.||+|||++++.+|..++.+|+.++
T Consensus 2 ~I~LiG~pGsGKTT~~k~La~~l~~~~id~D 32 (173)
T PRK00625 2 QIFLCGLPTVGKTSFGKALAKFLSLPFFDTD 32 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCEEEhh
Confidence 5899999999999999999999999998765
No 343
>PRK10867 signal recognition particle protein; Provisional
Probab=97.14 E-value=0.007 Score=66.99 Aligned_cols=198 Identities=20% Similarity=0.305 Sum_probs=98.0
Q ss_pred CCCCCceEEeCCCCChHHHHHHHHHHhc----CCCeeeechhhhHHH----H------hh----------cchHHHHHHH
Q 007575 362 ARPPRGVLLVGLPGTGKTLLAKAVAGEA----EVPFISCSASEFVEL----Y------VG----------MGASRVRDLF 417 (597)
Q Consensus 362 ~~~p~gVLL~GPPGTGKT~LArAIA~el----~~pfi~is~sef~~~----~------vG----------~~e~~vr~lF 417 (597)
..+|.-++++||+|+|||+++..+|..+ |..+..++++.+... + .| .......+.+
T Consensus 97 ~~~p~vI~~vG~~GsGKTTtaakLA~~l~~~~G~kV~lV~~D~~R~aa~eQL~~~a~~~gv~v~~~~~~~dp~~i~~~a~ 176 (433)
T PRK10867 97 AKPPTVIMMVGLQGAGKTTTAGKLAKYLKKKKKKKVLLVAADVYRPAAIEQLKTLGEQIGVPVFPSGDGQDPVDIAKAAL 176 (433)
T ss_pred CCCCEEEEEECCCCCcHHHHHHHHHHHHHHhcCCcEEEEEccccchHHHHHHHHHHhhcCCeEEecCCCCCHHHHHHHHH
Confidence 3457889999999999999777776643 566666666533111 0 00 1122334555
Q ss_pred HHHHhcCCeEEEEcCcchhhhhcCCcccccchhHHHHHHHHHHHHhcCCCCCCcEEEEEecCCCCCCCh--hhhCCCCcc
Q 007575 418 ARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATNRSDVLDP--ALRRPGRFD 495 (597)
Q Consensus 418 ~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~eqtLnqLL~emdg~~~~~~VIVIaaTNrpd~LD~--aLlRpgRFd 495 (597)
+.++.....+|+||=.-.+. .++..-+.+..+...+ .+..-++|+-++.-.+.++. ++...-.++
T Consensus 177 ~~a~~~~~DvVIIDTaGrl~----------~d~~lm~eL~~i~~~v---~p~evllVlda~~gq~av~~a~~F~~~~~i~ 243 (433)
T PRK10867 177 EEAKENGYDVVIVDTAGRLH----------IDEELMDELKAIKAAV---NPDEILLVVDAMTGQDAVNTAKAFNEALGLT 243 (433)
T ss_pred HHHHhcCCCEEEEeCCCCcc----------cCHHHHHHHHHHHHhh---CCCeEEEEEecccHHHHHHHHHHHHhhCCCC
Confidence 66666667799988764432 1122222222222222 22233444444332222221 122211233
Q ss_pred eEEEecCCCHHHHHHHHHHHHhcCCCC---------C--CCCCCHHHHHHhCCCCCHHHHHHHHHHHHHH---------H
Q 007575 496 RVVMVETPDKIGREAILKVHVSKKELP---------L--AKDIDLGDIASMTTGFTGADLANLVNEAALL---------A 555 (597)
Q Consensus 496 ~~I~v~~Pd~~eR~eILk~~l~~~~~~---------l--~~dvdl~~LA~~t~G~SgaDL~~Lv~eAal~---------A 555 (597)
-+.+...|...+...+-......+.| + -...+.+.++.+.-|. +|+..|+..|... +
T Consensus 244 -giIlTKlD~~~rgG~alsi~~~~~~PI~fig~Ge~v~DLe~f~p~~~~~~ilgm--gD~~~l~e~~~~~~~~~~~~~~~ 320 (433)
T PRK10867 244 -GVILTKLDGDARGGAALSIRAVTGKPIKFIGTGEKLDDLEPFHPDRMASRILGM--GDVLSLIEKAQEVVDEEKAEKLA 320 (433)
T ss_pred -EEEEeCccCcccccHHHHHHHHHCcCEEEEeCCCccccCccCCHHHHHHHHhCC--CChHHHHHHHHHhhCHHHHHHHH
Confidence 34444555444432222222111122 1 1223567777777553 5777777765432 1
Q ss_pred HhcCCCcccHHHHHHHHHHH
Q 007575 556 GRLNKVVVEKIDFIHAVERS 575 (597)
Q Consensus 556 ~r~~~~~It~~d~~~Al~~v 575 (597)
.+-.+...+.+||.+-++.+
T Consensus 321 ~~~~~g~f~l~d~~~q~~~~ 340 (433)
T PRK10867 321 KKLKKGKFDLEDFLEQLQQM 340 (433)
T ss_pred HHHHhCCCCHHHHHHHHHHH
Confidence 11122457888888776665
No 344
>cd02020 CMPK Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor.
Probab=97.14 E-value=0.0012 Score=60.68 Aligned_cols=30 Identities=27% Similarity=0.564 Sum_probs=28.1
Q ss_pred eEEeCCCCChHHHHHHHHHHhcCCCeeeec
Q 007575 368 VLLVGLPGTGKTLLAKAVAGEAEVPFISCS 397 (597)
Q Consensus 368 VLL~GPPGTGKT~LArAIA~el~~pfi~is 397 (597)
|.|.|+||+|||++|+.+|.+++.|++..+
T Consensus 2 I~i~G~~GsGKst~a~~la~~~~~~~~~~~ 31 (147)
T cd02020 2 IAIDGPAGSGKSTVAKLLAKKLGLPYLDTG 31 (147)
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCceeccc
Confidence 689999999999999999999999998775
No 345
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=97.14 E-value=0.004 Score=62.23 Aligned_cols=38 Identities=32% Similarity=0.359 Sum_probs=28.2
Q ss_pred CCCCCCceEEeCCCCChHHHHHHHHHHh---cCCCeeeech
Q 007575 361 GARPPRGVLLVGLPGTGKTLLAKAVAGE---AEVPFISCSA 398 (597)
Q Consensus 361 g~~~p~gVLL~GPPGTGKT~LArAIA~e---l~~pfi~is~ 398 (597)
|.+....++|+||||+|||+++..++.+ .+-+.+.++.
T Consensus 16 Gi~~G~~~~i~G~~G~GKT~l~~~~~~~~~~~g~~~~~is~ 56 (229)
T TIGR03881 16 GIPRGFFVAVTGEPGTGKTIFCLHFAYKGLRDGDPVIYVTT 56 (229)
T ss_pred CCcCCeEEEEECCCCCChHHHHHHHHHHHHhcCCeEEEEEc
Confidence 5666778999999999999999987643 2445555543
No 346
>PRK14527 adenylate kinase; Provisional
Probab=97.13 E-value=0.0016 Score=63.56 Aligned_cols=34 Identities=29% Similarity=0.421 Sum_probs=29.0
Q ss_pred CCCCceEEeCCCCChHHHHHHHHHHhcCCCeeee
Q 007575 363 RPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISC 396 (597)
Q Consensus 363 ~~p~gVLL~GPPGTGKT~LArAIA~el~~pfi~i 396 (597)
+.|.-++++||||+|||++|+.+|.+++.+.++.
T Consensus 4 ~~~~~i~i~G~pGsGKsT~a~~La~~~~~~~is~ 37 (191)
T PRK14527 4 TKNKVVIFLGPPGAGKGTQAERLAQELGLKKLST 37 (191)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHhCCCCCCc
Confidence 3456799999999999999999999998776654
No 347
>PRK05973 replicative DNA helicase; Provisional
Probab=97.13 E-value=0.0042 Score=63.44 Aligned_cols=39 Identities=36% Similarity=0.342 Sum_probs=29.1
Q ss_pred CCCCCCceEEeCCCCChHHHHHHHHHHhc---CCCeeeechh
Q 007575 361 GARPPRGVLLVGLPGTGKTLLAKAVAGEA---EVPFISCSAS 399 (597)
Q Consensus 361 g~~~p~gVLL~GPPGTGKT~LArAIA~el---~~pfi~is~s 399 (597)
|..+..-++|.|+||+|||+++-.++.+. |.++++++..
T Consensus 60 Gl~~Gsl~LIaG~PG~GKT~lalqfa~~~a~~Ge~vlyfSlE 101 (237)
T PRK05973 60 QLKPGDLVLLGARPGHGKTLLGLELAVEAMKSGRTGVFFTLE 101 (237)
T ss_pred CCCCCCEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEEEe
Confidence 45556678999999999999998886644 6666555543
No 348
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family. This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.
Probab=97.12 E-value=0.00039 Score=66.90 Aligned_cols=35 Identities=23% Similarity=0.441 Sum_probs=28.4
Q ss_pred eEEeCCCCChHHHHHHHHHHhcCCCeeeechhhhHHH
Q 007575 368 VLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFVEL 404 (597)
Q Consensus 368 VLL~GPPGTGKT~LArAIA~el~~pfi~is~sef~~~ 404 (597)
|+|+||||+|||++|+.+|.+++++.++ .++++..
T Consensus 2 i~i~G~pGsGKst~a~~la~~~~~~~is--~~d~lr~ 36 (183)
T TIGR01359 2 VFVLGGPGSGKGTQCAKIVENFGFTHLS--AGDLLRA 36 (183)
T ss_pred EEEECCCCCCHHHHHHHHHHHcCCeEEE--CChHHHH
Confidence 7899999999999999999999876554 4555443
No 349
>COG4178 ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only]
Probab=97.10 E-value=0.0013 Score=74.73 Aligned_cols=28 Identities=43% Similarity=0.661 Sum_probs=24.5
Q ss_pred CCCCCCceEEeCCCCChHHHHHHHHHHh
Q 007575 361 GARPPRGVLLVGLPGTGKTLLAKAVAGE 388 (597)
Q Consensus 361 g~~~p~gVLL~GPPGTGKT~LArAIA~e 388 (597)
..++...+|+.||+|||||+|.||+|+-
T Consensus 415 ~v~~G~~llI~G~SG~GKTsLlRaiaGL 442 (604)
T COG4178 415 EVRPGERLLITGESGAGKTSLLRALAGL 442 (604)
T ss_pred eeCCCCEEEEECCCCCCHHHHHHHHhcc
Confidence 3456678999999999999999999984
No 350
>cd00984 DnaB_C DnaB helicase C terminal domain. The hexameric helicase DnaB unwinds the DNA duplex at the chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.
Probab=97.10 E-value=0.0018 Score=65.13 Aligned_cols=38 Identities=26% Similarity=0.405 Sum_probs=29.7
Q ss_pred CCCCCCceEEeCCCCChHHHHHHHHHHhc----CCCeeeech
Q 007575 361 GARPPRGVLLVGLPGTGKTLLAKAVAGEA----EVPFISCSA 398 (597)
Q Consensus 361 g~~~p~gVLL~GPPGTGKT~LArAIA~el----~~pfi~is~ 398 (597)
|.++..-++|.|+||+|||+++..++..+ +.+++.++.
T Consensus 9 Gl~~G~l~lI~G~~G~GKT~~~~~~~~~~~~~~g~~vly~s~ 50 (242)
T cd00984 9 GLQPGDLIIIAARPSMGKTAFALNIAENIAKKQGKPVLFFSL 50 (242)
T ss_pred CCCCCeEEEEEeCCCCCHHHHHHHHHHHHHHhCCCceEEEeC
Confidence 56666779999999999999998886543 667766653
No 351
>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=97.09 E-value=0.0034 Score=62.86 Aligned_cols=23 Identities=30% Similarity=0.446 Sum_probs=20.5
Q ss_pred CCceEEeCCCCChHHHHHHHHHH
Q 007575 365 PRGVLLVGLPGTGKTLLAKAVAG 387 (597)
Q Consensus 365 p~gVLL~GPPGTGKT~LArAIA~ 387 (597)
++.++|+||.|+|||++.|.++.
T Consensus 29 ~~~~~itGpNg~GKStlLk~i~~ 51 (213)
T cd03281 29 PSIMVITGPNSSGKSVYLKQVAL 51 (213)
T ss_pred ceEEEEECCCCCChHHHHHHHHH
Confidence 35699999999999999999983
No 352
>TIGR03880 KaiC_arch_3 KaiC domain protein, AF_0351 family. This model represents a rather narrowly distributed archaeal protein family in which members have a single copy of the KaiC domain. This stands in contrast to the circadian clock protein KaiC itself, with two copies of the domain. Members are expected to have weak ATPase activity, by homology to the autokinase/autophosphorylase KaiC itself.
Probab=97.09 E-value=0.0046 Score=61.78 Aligned_cols=39 Identities=21% Similarity=0.192 Sum_probs=29.6
Q ss_pred CCCCCCceEEeCCCCChHHHHHHHHHHhc---CCCeeeechh
Q 007575 361 GARPPRGVLLVGLPGTGKTLLAKAVAGEA---EVPFISCSAS 399 (597)
Q Consensus 361 g~~~p~gVLL~GPPGTGKT~LArAIA~el---~~pfi~is~s 399 (597)
|.++..-++|.|+||+|||+++..++.+. +-+.++++..
T Consensus 12 Gi~~g~~~li~G~~G~GKt~~~~~~~~~~~~~g~~~~y~s~e 53 (224)
T TIGR03880 12 GFPEGHVIVVIGEYGTGKTTFSLQFLYQGLKNGEKAMYISLE 53 (224)
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECC
Confidence 55666779999999999999999887542 6666666543
No 353
>KOG3347 consensus Predicted nucleotide kinase/nuclear protein involved oxidative stress response [Nucleotide transport and metabolism]
Probab=97.09 E-value=0.00041 Score=65.68 Aligned_cols=33 Identities=36% Similarity=0.633 Sum_probs=29.9
Q ss_pred CCceEEeCCCCChHHHHHHHHHHhcCCCeeeec
Q 007575 365 PRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCS 397 (597)
Q Consensus 365 p~gVLL~GPPGTGKT~LArAIA~el~~pfi~is 397 (597)
..+||++|-||||||+++.++|...+.+++.++
T Consensus 7 ~PNILvtGTPG~GKstl~~~lae~~~~~~i~is 39 (176)
T KOG3347|consen 7 RPNILVTGTPGTGKSTLAERLAEKTGLEYIEIS 39 (176)
T ss_pred CCCEEEeCCCCCCchhHHHHHHHHhCCceEehh
Confidence 457999999999999999999999999998764
No 354
>PRK09519 recA DNA recombination protein RecA; Reviewed
Probab=97.09 E-value=0.0021 Score=75.38 Aligned_cols=119 Identities=18% Similarity=0.157 Sum_probs=66.4
Q ss_pred CCCCCCceEEeCCCCChHHHHHHHHHHh---cCCCeeeechhhhHHH----Hhhc------------chHHHHHHHHHHH
Q 007575 361 GARPPRGVLLVGLPGTGKTLLAKAVAGE---AEVPFISCSASEFVEL----YVGM------------GASRVRDLFARAK 421 (597)
Q Consensus 361 g~~~p~gVLL~GPPGTGKT~LArAIA~e---l~~pfi~is~sef~~~----~vG~------------~e~~vr~lF~~A~ 421 (597)
|.....-++|+||||||||+|+..++.+ .|-..+.++..+-... ..|. .+..+..+-...+
T Consensus 56 Gip~GsiteI~G~~GsGKTtLal~~~~~a~~~G~~v~yId~E~t~~~~~A~~lGvDl~~llv~~~~~~E~~l~~i~~lv~ 135 (790)
T PRK09519 56 GLPRGRVIEIYGPESSGKTTVALHAVANAQAAGGVAAFIDAEHALDPDYAKKLGVDTDSLLVSQPDTGEQALEIADMLIR 135 (790)
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEECCccchhHHHHHHcCCChhHeEEecCCCHHHHHHHHHHHhh
Confidence 4556667899999999999999765443 3556666655432220 0011 1222222222234
Q ss_pred hcCCeEEEEcCcchhhhhcCCcccccc--hhHHHHHHHHHHHHhcCCCCCCcEEEEEecC
Q 007575 422 KEAPSIIFIDEIDAVAKSRDGRFRIVS--NDEREQTLNQLLTEMDGFDSNSAVIVLGATN 479 (597)
Q Consensus 422 ~~aP~ILfIDEIDaL~~~r~~~~~~~~--~~e~eqtLnqLL~emdg~~~~~~VIVIaaTN 479 (597)
...+.+|+||-|.++.....-....+. .....+.++++|..|..+-...++.+|.+..
T Consensus 136 ~~~~~LVVIDSI~aL~~r~E~~g~~g~~~~~~q~rl~~q~L~~L~~~l~~~nvtvi~TNQ 195 (790)
T PRK09519 136 SGALDIVVIDSVAALVPRAELEGEMGDSHVGLQARLMSQALRKMTGALNNSGTTAIFINQ 195 (790)
T ss_pred cCCCeEEEEcchhhhcchhhccCCCCcccHHHHHHHHHHHHHHHHHHHHhCCCEEEEEec
Confidence 567899999999999852211101111 1233444566666665554455666666543
No 355
>KOG2543 consensus Origin recognition complex, subunit 5 [Replication, recombination and repair]
Probab=97.08 E-value=0.0086 Score=64.50 Aligned_cols=158 Identities=17% Similarity=0.228 Sum_probs=89.8
Q ss_pred cccCChHHHHHHHHHHHHhcChhHHhhcCCCCCCceEEeCCCCChHHHHHHHHHHhcCCCeeeechhhhHHH------H-
Q 007575 333 DVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFVEL------Y- 405 (597)
Q Consensus 333 dV~G~de~k~~L~eiv~~l~~p~~~~~lg~~~p~gVLL~GPPGTGKT~LArAIA~el~~pfi~is~sef~~~------~- 405 (597)
.+.+.+.+...|..++-.. ....|..|.|+|..|||||.+.+.+.++++.|.+.++|-+.+.. .
T Consensus 7 ~v~~Re~qi~~L~~Llg~~---------~~~~PS~~~iyG~sgTGKT~~~r~~l~~~n~~~vw~n~~ecft~~~lle~IL 77 (438)
T KOG2543|consen 7 NVPCRESQIRRLKSLLGNN---------SCTIPSIVHIYGHSGTGKTYLVRQLLRKLNLENVWLNCVECFTYAILLEKIL 77 (438)
T ss_pred CccchHHHHHHHHHHhCCC---------CcccceeEEEeccCCCchhHHHHHHHhhcCCcceeeehHHhccHHHHHHHHH
Confidence 4667777766666665311 12467788999999999999999999999999988887654331 0
Q ss_pred --h------hc----chHHHHH---HHHH--HHhc--CCeEEEEcCcchhhhhcCCcccccchhHHHHHHHHHHHHhcCC
Q 007575 406 --V------GM----GASRVRD---LFAR--AKKE--APSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGF 466 (597)
Q Consensus 406 --v------G~----~e~~vr~---lF~~--A~~~--aP~ILfIDEIDaL~~~r~~~~~~~~~~e~eqtLnqLL~emdg~ 466 (597)
+ |. ....+.+ +|.+ +... ..-.|++|.+|.+.... .-.++.|+..- ..
T Consensus 78 ~~~~~~d~dg~~~~~~~en~~d~i~~l~q~~~~t~~d~~~~liLDnad~lrD~~------------a~ll~~l~~L~-el 144 (438)
T KOG2543|consen 78 NKSQLADKDGDKVEGDAENFSDFIYLLVQWPAATNRDQKVFLILDNADALRDMD------------AILLQCLFRLY-EL 144 (438)
T ss_pred HHhccCCCchhhhhhHHHHHHHHHHHHHhhHHhhccCceEEEEEcCHHhhhccc------------hHHHHHHHHHH-HH
Confidence 1 10 1112222 2333 1112 23478899999985221 12334443322 22
Q ss_pred CCCCcEEEEEecCCCCCCChhhhCCCCcc-eEEEecCCCHHHHHHHHHH
Q 007575 467 DSNSAVIVLGATNRSDVLDPALRRPGRFD-RVVMVETPDKIGREAILKV 514 (597)
Q Consensus 467 ~~~~~VIVIaaTNrpd~LD~aLlRpgRFd-~~I~v~~Pd~~eR~eILk~ 514 (597)
-+...+.+|...-..+ +.-+.+-|-++ ..++++.|+.++...|+..
T Consensus 145 ~~~~~i~iils~~~~e--~~y~~n~g~~~i~~l~fP~Ys~~e~~~Il~~ 191 (438)
T KOG2543|consen 145 LNEPTIVIILSAPSCE--KQYLINTGTLEIVVLHFPQYSVEETQVILSR 191 (438)
T ss_pred hCCCceEEEEeccccH--HHhhcccCCCCceEEecCCCCHHHHHHHHhc
Confidence 2222333333322211 11222234443 3578889999999888764
No 356
>PRK08154 anaerobic benzoate catabolism transcriptional regulator; Reviewed
Probab=97.07 E-value=0.0017 Score=68.62 Aligned_cols=35 Identities=37% Similarity=0.657 Sum_probs=31.6
Q ss_pred CCCCCceEEeCCCCChHHHHHHHHHHhcCCCeeee
Q 007575 362 ARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISC 396 (597)
Q Consensus 362 ~~~p~gVLL~GPPGTGKT~LArAIA~el~~pfi~i 396 (597)
..++..|+|+|+||+|||++++.+|.++|.+|+.+
T Consensus 130 ~~~~~~I~l~G~~GsGKStvg~~La~~Lg~~~id~ 164 (309)
T PRK08154 130 AARRRRIALIGLRGAGKSTLGRMLAARLGVPFVEL 164 (309)
T ss_pred ccCCCEEEEECCCCCCHHHHHHHHHHHcCCCEEeH
Confidence 45677899999999999999999999999999954
No 357
>PRK13900 type IV secretion system ATPase VirB11; Provisional
Probab=97.07 E-value=0.00056 Score=73.09 Aligned_cols=71 Identities=25% Similarity=0.385 Sum_probs=48.1
Q ss_pred CCCceEEeCCCCChHHHHHHHHHHhcCC--Ceeeec-hhhhHH--------HH-----hhcchHHHHHHHHHHHhcCCeE
Q 007575 364 PPRGVLLVGLPGTGKTLLAKAVAGEAEV--PFISCS-ASEFVE--------LY-----VGMGASRVRDLFARAKKEAPSI 427 (597)
Q Consensus 364 ~p~gVLL~GPPGTGKT~LArAIA~el~~--pfi~is-~sef~~--------~~-----vG~~e~~vr~lF~~A~~~aP~I 427 (597)
..+++|++|++|+|||++++++..+... .++.+. ..++.- .. .|...-...++++.+....|++
T Consensus 159 ~~~nili~G~tgSGKTTll~aL~~~ip~~~ri~tiEd~~El~l~~~~n~~~~~~~~~~~~~~~~~~~~ll~~~LR~~PD~ 238 (332)
T PRK13900 159 SKKNIIISGGTSTGKTTFTNAALREIPAIERLITVEDAREIVLSNHPNRVHLLASKGGQGRAKVTTQDLIEACLRLRPDR 238 (332)
T ss_pred cCCcEEEECCCCCCHHHHHHHHHhhCCCCCeEEEecCCCccccccCCCEEEEEecCCCCCcCcCcHHHHHHHHhccCCCe
Confidence 4568999999999999999999987642 222221 111110 00 1122234678899999999999
Q ss_pred EEEcCcc
Q 007575 428 IFIDEID 434 (597)
Q Consensus 428 LfIDEID 434 (597)
|++.|+-
T Consensus 239 IivGEiR 245 (332)
T PRK13900 239 IIVGELR 245 (332)
T ss_pred EEEEecC
Confidence 9999984
No 358
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=97.06 E-value=0.0037 Score=64.41 Aligned_cols=38 Identities=21% Similarity=0.329 Sum_probs=28.8
Q ss_pred CCCCCCceEEeCCCCChHHHHHHHHHHhc---CCCeeeech
Q 007575 361 GARPPRGVLLVGLPGTGKTLLAKAVAGEA---EVPFISCSA 398 (597)
Q Consensus 361 g~~~p~gVLL~GPPGTGKT~LArAIA~el---~~pfi~is~ 398 (597)
|.+...-++++||||||||+++-.+|.+. |-+.++++.
T Consensus 32 Gip~gs~~lI~G~pGtGKT~l~~qf~~~~a~~Ge~vlyis~ 72 (259)
T TIGR03878 32 GIPAYSVINITGVSDTGKSLMVEQFAVTQASRGNPVLFVTV 72 (259)
T ss_pred CeECCcEEEEEcCCCCCHHHHHHHHHHHHHhCCCcEEEEEe
Confidence 56667789999999999999999886542 555555543
No 359
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=97.06 E-value=0.0014 Score=67.77 Aligned_cols=93 Identities=20% Similarity=0.279 Sum_probs=57.5
Q ss_pred cccccccCChHHHHHHHHHHHHhcChhHHhhcCCCCCCceEEeCCCCChHHHHHHHHHHhcC---CCeeeec-hhhhHHH
Q 007575 329 ITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAE---VPFISCS-ASEFVEL 404 (597)
Q Consensus 329 vtf~dV~G~de~k~~L~eiv~~l~~p~~~~~lg~~~p~gVLL~GPPGTGKT~LArAIA~el~---~pfi~is-~sef~~~ 404 (597)
.+++++.-.++..+.|++++. . ....+++.||+|+|||++++++..+.. ..++.+. ..++.-.
T Consensus 57 ~~l~~lg~~~~~~~~l~~~~~---~----------~~GlilisG~tGSGKTT~l~all~~i~~~~~~iitiEdp~E~~~~ 123 (264)
T cd01129 57 LDLEKLGLKPENLEIFRKLLE---K----------PHGIILVTGPTGSGKTTTLYSALSELNTPEKNIITVEDPVEYQIP 123 (264)
T ss_pred CCHHHcCCCHHHHHHHHHHHh---c----------CCCEEEEECCCCCcHHHHHHHHHhhhCCCCCeEEEECCCceecCC
Confidence 456677655555555555443 1 122489999999999999999987663 2344432 1121100
Q ss_pred -----Hhh-cchHHHHHHHHHHHhcCCeEEEEcCcc
Q 007575 405 -----YVG-MGASRVRDLFARAKKEAPSIIFIDEID 434 (597)
Q Consensus 405 -----~vG-~~e~~vr~lF~~A~~~aP~ILfIDEID 434 (597)
.+. .......++++.+....|++|+|+|+.
T Consensus 124 ~~~q~~v~~~~~~~~~~~l~~~lR~~PD~i~vgEiR 159 (264)
T cd01129 124 GINQVQVNEKAGLTFARGLRAILRQDPDIIMVGEIR 159 (264)
T ss_pred CceEEEeCCcCCcCHHHHHHHHhccCCCEEEeccCC
Confidence 011 111245677788888999999999994
No 360
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=97.05 E-value=0.009 Score=58.22 Aligned_cols=117 Identities=16% Similarity=0.155 Sum_probs=63.8
Q ss_pred CCCCceEEeCCCCChHHHHHHHHHHhcCC-------------CeeeechhhhHHHHhhc-------------chHHHHHH
Q 007575 363 RPPRGVLLVGLPGTGKTLLAKAVAGEAEV-------------PFISCSASEFVELYVGM-------------GASRVRDL 416 (597)
Q Consensus 363 ~~p~gVLL~GPPGTGKT~LArAIA~el~~-------------pfi~is~sef~~~~vG~-------------~e~~vr~l 416 (597)
.+..-+.|.||+|+|||+|.++++...|. ++..+.-.++...+ +. +..+.+-.
T Consensus 19 ~~G~~~~l~G~nG~GKSTLl~~il~~~G~v~~~~~~~~~~~~~~~~~~q~~~l~~~-~L~~~~~~~~~~~LSgGq~qrl~ 97 (176)
T cd03238 19 PLNVLVVVTGVSGSGKSTLVNEGLYASGKARLISFLPKFSRNKLIFIDQLQFLIDV-GLGYLTLGQKLSTLSGGELQRVK 97 (176)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhhcCCcEEECCcccccccccEEEEhHHHHHHHc-CCCccccCCCcCcCCHHHHHHHH
Confidence 34456889999999999999999743221 12222111122211 10 11233445
Q ss_pred HHHHHhcC--CeEEEEcCcchhhhhcCCcccccchhHHHHHHHHHHHHhcCCCCCCcEEEEEecCCCCCCChhhhCCCCc
Q 007575 417 FARAKKEA--PSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATNRSDVLDPALRRPGRF 494 (597)
Q Consensus 417 F~~A~~~a--P~ILfIDEIDaL~~~r~~~~~~~~~~e~eqtLnqLL~emdg~~~~~~VIVIaaTNrpd~LD~aLlRpgRF 494 (597)
+..|.... |.++++||--+- .+....+.+.+++..+. . .+..||.+|+.++. .+ ..
T Consensus 98 laral~~~~~p~llLlDEPt~~-----------LD~~~~~~l~~~l~~~~---~-~g~tvIivSH~~~~-----~~--~~ 155 (176)
T cd03238 98 LASELFSEPPGTLFILDEPSTG-----------LHQQDINQLLEVIKGLI---D-LGNTVILIEHNLDV-----LS--SA 155 (176)
T ss_pred HHHHHhhCCCCCEEEEeCCccc-----------CCHHHHHHHHHHHHHHH---h-CCCEEEEEeCCHHH-----HH--hC
Confidence 66666677 899999997432 22333344444444442 1 23455567765532 23 46
Q ss_pred ceEEEecC
Q 007575 495 DRVVMVET 502 (597)
Q Consensus 495 d~~I~v~~ 502 (597)
|+++.+..
T Consensus 156 d~i~~l~~ 163 (176)
T cd03238 156 DWIIDFGP 163 (176)
T ss_pred CEEEEECC
Confidence 77776643
No 361
>PRK05800 cobU adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase; Validated
Probab=97.05 E-value=0.0036 Score=60.63 Aligned_cols=95 Identities=11% Similarity=0.160 Sum_probs=55.4
Q ss_pred ceEEeCCCCChHHHHHHHHHHhcCCCeeeechhhhHHH-H-hh---------------cchHHHHHHHHHHHhcCCeEEE
Q 007575 367 GVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFVEL-Y-VG---------------MGASRVRDLFARAKKEAPSIIF 429 (597)
Q Consensus 367 gVLL~GPPGTGKT~LArAIA~el~~pfi~is~sef~~~-~-vG---------------~~e~~vr~lF~~A~~~aP~ILf 429 (597)
-+|+.|+||+|||++|..++.+++.+++++........ . .. +....+..+++.. ...+.+|+
T Consensus 3 ~ili~G~~~sGKS~~a~~l~~~~~~~~~~iat~~~~~~e~~~ri~~h~~~R~~~w~t~E~~~~l~~~i~~~-~~~~~~Vl 81 (170)
T PRK05800 3 LILVTGGARSGKSRFAERLAAQSGLQVLYIATAQPFDDEMAARIAHHRQRRPAHWQTVEEPLDLAELLRAD-AAPGRCVL 81 (170)
T ss_pred EEEEECCCCccHHHHHHHHHHHcCCCcEeCcCCCCChHHHHHHHHHHHhcCCCCCeEecccccHHHHHHhh-cCCCCEEE
Confidence 48999999999999999999998877777654322111 0 00 0011233333321 12355899
Q ss_pred EcCcchhhhhcCCcccccchhHHHHHHHHHHHHhcC
Q 007575 430 IDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDG 465 (597)
Q Consensus 430 IDEIDaL~~~r~~~~~~~~~~e~eqtLnqLL~emdg 465 (597)
||-+..+....-.. ...+.....+.+++..+..
T Consensus 82 ID~Lt~~~~n~l~~---~~~~~~~~~l~~li~~L~~ 114 (170)
T PRK05800 82 VDCLTTWVTNLLFE---EGEEAIAAEIDALLAALQQ 114 (170)
T ss_pred ehhHHHHHHHHhcc---cchHHHHHHHHHHHHHHHc
Confidence 99998886543210 0012234455667776653
No 362
>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=97.04 E-value=0.0056 Score=59.48 Aligned_cols=26 Identities=35% Similarity=0.420 Sum_probs=22.5
Q ss_pred CCCCceEEeCCCCChHHHHHHHHHHh
Q 007575 363 RPPRGVLLVGLPGTGKTLLAKAVAGE 388 (597)
Q Consensus 363 ~~p~gVLL~GPPGTGKT~LArAIA~e 388 (597)
.+.-.++|.||+||||++|.|++|.-
T Consensus 27 ~~Ge~iaitGPSG~GKStllk~va~L 52 (223)
T COG4619 27 RAGEFIAITGPSGCGKSTLLKIVASL 52 (223)
T ss_pred cCCceEEEeCCCCccHHHHHHHHHhc
Confidence 34556999999999999999999974
No 363
>cd00544 CobU Adenosylcobinamide kinase / adenosylcobinamide phosphate guanyltransferase (CobU). CobU is bifunctional cobalbumin biosynthesis enzymes which display adenosylcobinamide kinase and adenosylcobinamide phosphate guanyltransferase activity. This enzyme is a homotrimer with a propeller-like shape.
Probab=97.04 E-value=0.0029 Score=61.29 Aligned_cols=96 Identities=15% Similarity=0.106 Sum_probs=55.1
Q ss_pred eEEeCCCCChHHHHHHHHHHhcCCCeeeechhhh-----HHH---H---------hhcchHHHHHHHHHHHhcCCeEEEE
Q 007575 368 VLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEF-----VEL---Y---------VGMGASRVRDLFARAKKEAPSIIFI 430 (597)
Q Consensus 368 VLL~GPPGTGKT~LArAIA~el~~pfi~is~sef-----~~~---~---------vG~~e~~vr~lF~~A~~~aP~ILfI 430 (597)
+|+.|++|+|||++|..++.+.+.+.+++....- ... . ..+....+.+.++... .+.+|+|
T Consensus 2 ~li~G~~~sGKS~~a~~~~~~~~~~~~y~at~~~~d~em~~rI~~H~~~R~~~w~t~E~~~~l~~~l~~~~--~~~~VLI 79 (169)
T cd00544 2 ILVTGGARSGKSRFAERLAAELGGPVTYIATAEAFDDEMAERIARHRKRRPAHWRTIETPRDLVSALKELD--PGDVVLI 79 (169)
T ss_pred EEEECCCCCCHHHHHHHHHHhcCCCeEEEEccCcCCHHHHHHHHHHHHhCCCCceEeecHHHHHHHHHhcC--CCCEEEE
Confidence 6899999999999999999887767776643321 111 0 0112223344433222 4669999
Q ss_pred cCcchhhhhcCCcccccchhHHHHHHHHHHHHhcC
Q 007575 431 DEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDG 465 (597)
Q Consensus 431 DEIDaL~~~r~~~~~~~~~~e~eqtLnqLL~emdg 465 (597)
|-+..+....-........+...+.+..|+..+..
T Consensus 80 Dclt~~~~n~l~~~~~~~~~~~~~~i~~l~~~l~~ 114 (169)
T cd00544 80 DCLTLWVTNLLFADLEEWEAAIADEIDALLAAVRN 114 (169)
T ss_pred EcHhHHHHHhCCCccccchhHHHHHHHHHHHHHHc
Confidence 99998876542110000002234455667776653
No 364
>PRK04328 hypothetical protein; Provisional
Probab=97.04 E-value=0.0056 Score=62.69 Aligned_cols=38 Identities=29% Similarity=0.389 Sum_probs=28.5
Q ss_pred CCCCCCceEEeCCCCChHHHHHHHHHHh---cCCCeeeech
Q 007575 361 GARPPRGVLLVGLPGTGKTLLAKAVAGE---AEVPFISCSA 398 (597)
Q Consensus 361 g~~~p~gVLL~GPPGTGKT~LArAIA~e---l~~pfi~is~ 398 (597)
|.++...+||+||||||||+|+..++.+ .|-+.++++.
T Consensus 19 Gip~gs~ili~G~pGsGKT~l~~~fl~~~~~~ge~~lyis~ 59 (249)
T PRK04328 19 GIPERNVVLLSGGPGTGKSIFSQQFLWNGLQMGEPGVYVAL 59 (249)
T ss_pred CCcCCcEEEEEcCCCCCHHHHHHHHHHHHHhcCCcEEEEEe
Confidence 5666778999999999999998877543 2556655554
No 365
>PRK14531 adenylate kinase; Provisional
Probab=97.03 E-value=0.00058 Score=66.37 Aligned_cols=31 Identities=26% Similarity=0.462 Sum_probs=27.6
Q ss_pred CceEEeCCCCChHHHHHHHHHHhcCCCeeee
Q 007575 366 RGVLLVGLPGTGKTLLAKAVAGEAEVPFISC 396 (597)
Q Consensus 366 ~gVLL~GPPGTGKT~LArAIA~el~~pfi~i 396 (597)
..|+++||||+|||++++.+|..+|++++++
T Consensus 3 ~~i~i~G~pGsGKsT~~~~la~~~g~~~is~ 33 (183)
T PRK14531 3 QRLLFLGPPGAGKGTQAARLCAAHGLRHLST 33 (183)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCCeEec
Confidence 3599999999999999999999999887654
No 366
>COG5271 MDN1 AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only]
Probab=97.01 E-value=0.0021 Score=78.51 Aligned_cols=135 Identities=28% Similarity=0.356 Sum_probs=88.8
Q ss_pred CCceEEeCCCCChHHHHHHHHHHhcCCCeeeechhhh---HHHH----hhc--chHHHH--HHHHHHHhcCCeEEEEcCc
Q 007575 365 PRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEF---VELY----VGM--GASRVR--DLFARAKKEAPSIIFIDEI 433 (597)
Q Consensus 365 p~gVLL~GPPGTGKT~LArAIA~el~~pfi~is~sef---~~~~----vG~--~e~~vr--~lF~~A~~~aP~ILfIDEI 433 (597)
.+++||.|.||+|||.|..|+|++.|-.++.|+.++- +..+ .++ ++-+.+ ..++..+.+. -|++||+
T Consensus 1543 ~kpilLEGsPGVGKTSlItaLAr~tG~kliRINLSeQTdL~DLfGsd~Pve~~Gef~w~dapfL~amr~G~--WVlLDEi 1620 (4600)
T COG5271 1543 GKPILLEGSPGVGKTSLITALARKTGKKLIRINLSEQTDLCDLFGSDLPVEEGGEFRWMDAPFLHAMRDGG--WVLLDEI 1620 (4600)
T ss_pred CCceeecCCCCccHHHHHHHHHHHhcCceEEeeccccchHHHHhCCCCCcccCceeEecccHHHHHhhcCC--EEEeehh
Confidence 4579999999999999999999999999999998743 2222 111 222222 2334444443 6889998
Q ss_pred chhhhhcCCcccccchhHHHHHHHHHHH--------Hhc-CCCCCCcEEEEEecCCCC------CCChhhhCCCCcceEE
Q 007575 434 DAVAKSRDGRFRIVSNDEREQTLNQLLT--------EMD-GFDSNSAVIVLGATNRSD------VLDPALRRPGRFDRVV 498 (597)
Q Consensus 434 DaL~~~r~~~~~~~~~~e~eqtLnqLL~--------emd-g~~~~~~VIVIaaTNrpd------~LD~aLlRpgRFd~~I 498 (597)
.-...+ .-.-+|..|. ++| .|.-..+..|+||-|..+ .|+..++. ||. +|
T Consensus 1621 NLaSQS------------VlEGLNacLDhR~eayIPEld~~f~~HpnfrVFAaqNPq~qggGRKgLPkSF~n--RFs-vV 1685 (4600)
T COG5271 1621 NLASQS------------VLEGLNACLDHRREAYIPELDKTFDVHPNFRVFAAQNPQDQGGGRKGLPKSFLN--RFS-VV 1685 (4600)
T ss_pred hhhHHH------------HHHHHHHHHhhccccccccccceeeccCCeeeeeecCchhcCCCcccCCHHHhh--hhh-eE
Confidence 543211 0112233332 232 133456788888888753 58999988 996 78
Q ss_pred EecCCCHHHHHHHHHHHH
Q 007575 499 MVETPDKIGREAILKVHV 516 (597)
Q Consensus 499 ~v~~Pd~~eR~eILk~~l 516 (597)
+++..+.++...|.....
T Consensus 1686 ~~d~lt~dDi~~Ia~~~y 1703 (4600)
T COG5271 1686 KMDGLTTDDITHIANKMY 1703 (4600)
T ss_pred EecccccchHHHHHHhhC
Confidence 999888887777776654
No 367
>PRK13851 type IV secretion system protein VirB11; Provisional
Probab=97.00 E-value=0.0007 Score=72.71 Aligned_cols=73 Identities=26% Similarity=0.388 Sum_probs=48.7
Q ss_pred CCCCCceEEeCCCCChHHHHHHHHHHhcCC--Ceeeec-hhhhHH-------H-----HhhcchHHHHHHHHHHHhcCCe
Q 007575 362 ARPPRGVLLVGLPGTGKTLLAKAVAGEAEV--PFISCS-ASEFVE-------L-----YVGMGASRVRDLFARAKKEAPS 426 (597)
Q Consensus 362 ~~~p~gVLL~GPPGTGKT~LArAIA~el~~--pfi~is-~sef~~-------~-----~vG~~e~~vr~lF~~A~~~aP~ 426 (597)
.+..+++|++||+|+|||+++++++++... .++.+. ..++.- . ..+...-...++++.+....|.
T Consensus 159 v~~~~nilI~G~tGSGKTTll~aLl~~i~~~~rivtiEd~~El~l~~~~~v~l~~~~~~~~~~~~t~~~ll~~~LR~~pD 238 (344)
T PRK13851 159 VVGRLTMLLCGPTGSGKTTMSKTLISAIPPQERLITIEDTLELVIPHENHVRLLYSKNGAGLGAVTAEHLLQASLRMRPD 238 (344)
T ss_pred HHcCCeEEEECCCCccHHHHHHHHHcccCCCCCEEEECCCccccCCCCCEEEEEeeccccCcCccCHHHHHHHHhcCCCC
Confidence 345568999999999999999999987642 222221 111110 0 0112233466888999999999
Q ss_pred EEEEcCcc
Q 007575 427 IIFIDEID 434 (597)
Q Consensus 427 ILfIDEID 434 (597)
.|++.|+-
T Consensus 239 ~IivGEiR 246 (344)
T PRK13851 239 RILLGEMR 246 (344)
T ss_pred eEEEEeeC
Confidence 99999974
No 368
>TIGR02238 recomb_DMC1 meiotic recombinase Dmc1. This model describes DMC1, a subfamily of a larger family of DNA repair and recombination proteins. It is eukaryotic only and most closely related to eukaryotic RAD51. It also resembles archaeal RadA (TIGR02236) and RadB (TIGR02237) and bacterial RecA (TIGR02012). It has been characterized for human as a recombinase active only in meiosis.
Probab=96.99 E-value=0.0022 Score=68.01 Aligned_cols=116 Identities=20% Similarity=0.203 Sum_probs=64.1
Q ss_pred CCCCCCceEEeCCCCChHHHHHHHHHHhc---------CCCeeeechhh-h-----HHH--Hhhcc--------------
Q 007575 361 GARPPRGVLLVGLPGTGKTLLAKAVAGEA---------EVPFISCSASE-F-----VEL--YVGMG-------------- 409 (597)
Q Consensus 361 g~~~p~gVLL~GPPGTGKT~LArAIA~el---------~~pfi~is~se-f-----~~~--~vG~~-------------- 409 (597)
|.+...-+.|+||||+|||.|+..+|-.. +...++++..+ | ... -.|..
T Consensus 92 Gi~~G~iteI~G~~GsGKTql~lqla~~~~~~~~~gg~~~~vvYIdtE~~f~~eRi~~~a~~~g~d~~~~l~~i~~~~~~ 171 (313)
T TIGR02238 92 GIESMSITEVFGEFRCGKTQLSHTLCVTAQLPREMGGGNGKVAYIDTEGTFRPDRIRAIAERFGVDPDAVLDNILYARAY 171 (313)
T ss_pred CCcCCeEEEEECCCCCCcCHHHHHHHHHHhcchhhcCCCCeEEEEEcCCCCCHHHHHHHHHHcCCChHHhcCcEEEecCC
Confidence 45556678899999999999998876321 34556665433 1 100 00110
Q ss_pred -h----HHHHHHHHHHHhcCCeEEEEcCcchhhhhcCCcccccchhHHHHHHHHHHHHhcCCCCCCcEEEEEec
Q 007575 410 -A----SRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGAT 478 (597)
Q Consensus 410 -e----~~vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~eqtLnqLL~emdg~~~~~~VIVIaaT 478 (597)
. ..+..+........+.+|+||-|-++....-.+ .+...++.+.+++++..|..+....++.||.+.
T Consensus 172 ~~e~~~~~l~~l~~~i~~~~~~LvVIDSisal~r~~~~~--~g~~~~r~~~l~~~~~~L~~la~~~~vavvitN 243 (313)
T TIGR02238 172 TSEHQMELLDYLAAKFSEEPFRLLIVDSIMALFRVDFSG--RGELSERQQKLAQMLSRLNKISEEFNVAVFVTN 243 (313)
T ss_pred CHHHHHHHHHHHHHHhhccCCCEEEEEcchHhhhhhccC--ccchHHHHHHHHHHHHHHHHHHHHcCcEEEEEC
Confidence 0 111222222334568899999999887642111 112233444566666666555445556666554
No 369
>PRK04301 radA DNA repair and recombination protein RadA; Validated
Probab=96.99 E-value=0.0024 Score=67.64 Aligned_cols=117 Identities=17% Similarity=0.158 Sum_probs=64.8
Q ss_pred CCCCCCceEEeCCCCChHHHHHHHHHHhc---------CCCeeeechhhh------HHHH--hhcch-------------
Q 007575 361 GARPPRGVLLVGLPGTGKTLLAKAVAGEA---------EVPFISCSASEF------VELY--VGMGA------------- 410 (597)
Q Consensus 361 g~~~p~gVLL~GPPGTGKT~LArAIA~el---------~~pfi~is~sef------~~~~--vG~~e------------- 410 (597)
|.+...-++|+||||+|||+++-.+|-.+ +..+++++..+- .+.. .|...
T Consensus 98 Gi~~g~vtei~G~~GsGKT~l~~~~~~~~~~~~~~gg~~~~~~yi~te~~f~~~rl~~~~~~~g~~~~~~l~~i~~~~~~ 177 (317)
T PRK04301 98 GIETQSITEFYGEFGSGKTQICHQLAVNVQLPEEKGGLEGKAVYIDTEGTFRPERIEQMAEALGLDPDEVLDNIHVARAY 177 (317)
T ss_pred CccCCcEEEEECCCCCCHhHHHHHHHHHhccccccCCCCceEEEEeCCCCcCHHHHHHHHHHcCCChHhhhccEEEEeCC
Confidence 45666778899999999999999998653 235666655431 1100 01100
Q ss_pred ------HHHHHHHHHHHh-cCCeEEEEcCcchhhhhcCCcccccchhHHHHHHHHHHHHhcCCCCCCcEEEEEecC
Q 007575 411 ------SRVRDLFARAKK-EAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATN 479 (597)
Q Consensus 411 ------~~vr~lF~~A~~-~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~eqtLnqLL~emdg~~~~~~VIVIaaTN 479 (597)
..+..+...... ..+++|+||=|-++....-.+ .+...++.+.+.+++..|..+....++.||.++.
T Consensus 178 ~~~~~~~~~~~l~~~i~~~~~~~lvVIDSisa~~~~~~~~--~~~~~~r~~~l~~~~~~L~~la~~~~vavl~tnq 251 (317)
T PRK04301 178 NSDHQMLLAEKAEELIKEGENIKLVIVDSLTAHFRAEYVG--RGNLAERQQKLNKHLHDLLRLADLYNAAVVVTNQ 251 (317)
T ss_pred CHHHHHHHHHHHHHHHhccCceeEEEEECchHHhhhhccC--CccHHHHHHHHHHHHHHHHHHHHHhCCEEEEece
Confidence 011122222233 456799999999986542111 1122344555666666554444445566666654
No 370
>cd01428 ADK Adenylate kinase (ADK) catalyzes the reversible phosphoryl transfer from adenosine triphosphates (ATP) to adenosine monophosphates (AMP) and to yield adenosine diphosphates (ADP). This enzyme is required for the biosynthesis of ADP and is essential for homeostasis of adenosine phosphates.
Probab=96.99 E-value=0.00059 Score=65.94 Aligned_cols=34 Identities=35% Similarity=0.641 Sum_probs=28.6
Q ss_pred eEEeCCCCChHHHHHHHHHHhcCCCeeeechhhhHH
Q 007575 368 VLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFVE 403 (597)
Q Consensus 368 VLL~GPPGTGKT~LArAIA~el~~pfi~is~sef~~ 403 (597)
|+|+||||+|||++|+.+|.+++++++.+ ++++.
T Consensus 2 I~i~G~pGsGKst~a~~La~~~~~~~i~~--~~l~~ 35 (194)
T cd01428 2 ILLLGPPGSGKGTQAERLAKKYGLPHIST--GDLLR 35 (194)
T ss_pred EEEECCCCCCHHHHHHHHHHHcCCeEEEC--cHHHH
Confidence 79999999999999999999998877654 44443
No 371
>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []. It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.
Probab=96.98 E-value=0.00065 Score=65.68 Aligned_cols=23 Identities=43% Similarity=0.664 Sum_probs=20.2
Q ss_pred ceEEeCCCCChHHHHHHHHHHhc
Q 007575 367 GVLLVGLPGTGKTLLAKAVAGEA 389 (597)
Q Consensus 367 gVLL~GPPGTGKT~LArAIA~el 389 (597)
.++|+|+||+||||+++.++.++
T Consensus 1 ~i~iTG~pG~GKTTll~k~i~~l 23 (168)
T PF03266_consen 1 HIFITGPPGVGKTTLLKKVIEEL 23 (168)
T ss_dssp EEEEES-TTSSHHHHHHHHHHHH
T ss_pred CEEEECcCCCCHHHHHHHHHHHh
Confidence 38999999999999999998887
No 372
>PRK06217 hypothetical protein; Validated
Probab=96.97 E-value=0.00066 Score=65.89 Aligned_cols=31 Identities=26% Similarity=0.544 Sum_probs=28.3
Q ss_pred ceEEeCCCCChHHHHHHHHHHhcCCCeeeec
Q 007575 367 GVLLVGLPGTGKTLLAKAVAGEAEVPFISCS 397 (597)
Q Consensus 367 gVLL~GPPGTGKT~LArAIA~el~~pfi~is 397 (597)
.|+|.|+||+|||++|++++..++.|++..+
T Consensus 3 ~I~i~G~~GsGKSTla~~L~~~l~~~~~~~D 33 (183)
T PRK06217 3 RIHITGASGSGTTTLGAALAERLDIPHLDTD 33 (183)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCCcEEEcC
Confidence 4899999999999999999999999987654
No 373
>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11. The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.
Probab=96.97 E-value=0.00092 Score=70.58 Aligned_cols=73 Identities=22% Similarity=0.413 Sum_probs=48.3
Q ss_pred CCCCCceEEeCCCCChHHHHHHHHHHhcCC--Ceeeec-hhhhHH-------HH-----hhcchHHHHHHHHHHHhcCCe
Q 007575 362 ARPPRGVLLVGLPGTGKTLLAKAVAGEAEV--PFISCS-ASEFVE-------LY-----VGMGASRVRDLFARAKKEAPS 426 (597)
Q Consensus 362 ~~~p~gVLL~GPPGTGKT~LArAIA~el~~--pfi~is-~sef~~-------~~-----vG~~e~~vr~lF~~A~~~aP~ 426 (597)
.+...+++++||+|+|||++++++++.... -.+.+. ..++.- .. .+...-...+++..+....|.
T Consensus 141 v~~~~~ili~G~tGsGKTTll~al~~~~~~~~~iv~ied~~El~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~Lr~~pd 220 (308)
T TIGR02788 141 IASRKNIIISGGTGSGKTTFLKSLVDEIPKDERIITIEDTREIFLPHPNYVHLFYSKGGQGLAKVTPKDLLQSCLRMRPD 220 (308)
T ss_pred hhCCCEEEEECCCCCCHHHHHHHHHccCCccccEEEEcCccccCCCCCCEEEEEecCCCCCcCccCHHHHHHHHhcCCCC
Confidence 445668999999999999999999987632 122221 011100 00 011223467788888889999
Q ss_pred EEEEcCcc
Q 007575 427 IIFIDEID 434 (597)
Q Consensus 427 ILfIDEID 434 (597)
+|++||+-
T Consensus 221 ~ii~gE~r 228 (308)
T TIGR02788 221 RIILGELR 228 (308)
T ss_pred eEEEeccC
Confidence 99999984
No 374
>PRK04040 adenylate kinase; Provisional
Probab=96.97 E-value=0.0045 Score=60.83 Aligned_cols=31 Identities=23% Similarity=0.460 Sum_probs=26.5
Q ss_pred CCceEEeCCCCChHHHHHHHHHHhc--CCCeee
Q 007575 365 PRGVLLVGLPGTGKTLLAKAVAGEA--EVPFIS 395 (597)
Q Consensus 365 p~gVLL~GPPGTGKT~LArAIA~el--~~pfi~ 395 (597)
|+-++|+|+||+|||++++.++.++ +.+++.
T Consensus 2 ~~~i~v~G~pG~GKtt~~~~l~~~l~~~~~~~~ 34 (188)
T PRK04040 2 MKVVVVTGVPGVGKTTVLNKALEKLKEDYKIVN 34 (188)
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHHhccCCeEEe
Confidence 4568999999999999999999998 555543
No 375
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=96.96 E-value=0.0048 Score=69.19 Aligned_cols=78 Identities=26% Similarity=0.272 Sum_probs=54.7
Q ss_pred CCCCCCceEEeCCCCChHHHHHHHHHHhc---CCCeeeechhhhHHHHh------hc----------------------c
Q 007575 361 GARPPRGVLLVGLPGTGKTLLAKAVAGEA---EVPFISCSASEFVELYV------GM----------------------G 409 (597)
Q Consensus 361 g~~~p~gVLL~GPPGTGKT~LArAIA~el---~~pfi~is~sef~~~~v------G~----------------------~ 409 (597)
|..+...+||.||||+|||+|+-.++.+. |-+.++++..+-.+.+. |. .
T Consensus 259 G~~~gs~~li~G~~G~GKt~l~~~f~~~~~~~ge~~~y~s~eEs~~~i~~~~~~lg~~~~~~~~~g~l~~~~~~p~~~~~ 338 (484)
T TIGR02655 259 GFFKDSIILATGATGTGKTLLVSKFLENACANKERAILFAYEESRAQLLRNAYSWGIDFEEMEQQGLLKIICAYPESAGL 338 (484)
T ss_pred CccCCcEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEeeCCHHHHHHHHHHcCCChHHHhhCCcEEEEEcccccCCh
Confidence 56667779999999999999999987754 55666665543322210 10 1
Q ss_pred hHHHHHHHHHHHhcCCeEEEEcCcchhhh
Q 007575 410 ASRVRDLFARAKKEAPSIIFIDEIDAVAK 438 (597)
Q Consensus 410 e~~vr~lF~~A~~~aP~ILfIDEIDaL~~ 438 (597)
+..+..+.+......|.+|+||-+..+..
T Consensus 339 ~~~~~~i~~~i~~~~~~~vvIDsi~~~~~ 367 (484)
T TIGR02655 339 EDHLQIIKSEIADFKPARIAIDSLSALAR 367 (484)
T ss_pred HHHHHHHHHHHHHcCCCEEEEcCHHHHHH
Confidence 34456666777777899999999998754
No 376
>TIGR02236 recomb_radA DNA repair and recombination protein RadA. This family consists exclusively of archaeal RadA protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239), and archaeal RadB (TIGR02237). This protein is involved in DNA repair and recombination. The member from Pyrococcus horikoshii contains an intein.
Probab=96.95 E-value=0.0034 Score=66.08 Aligned_cols=117 Identities=16% Similarity=0.175 Sum_probs=64.2
Q ss_pred CCCCCCceEEeCCCCChHHHHHHHHHHhc---------CCCeeeechhh-h-----HHH--HhhcchH------------
Q 007575 361 GARPPRGVLLVGLPGTGKTLLAKAVAGEA---------EVPFISCSASE-F-----VEL--YVGMGAS------------ 411 (597)
Q Consensus 361 g~~~p~gVLL~GPPGTGKT~LArAIA~el---------~~pfi~is~se-f-----~~~--~vG~~e~------------ 411 (597)
|.+...-++|+||||+|||+++-.+|..+ +-..++++..+ | .+. ..|....
T Consensus 91 Gi~~g~i~ei~G~~g~GKT~l~~~~~~~~~~~~~~g~~~~~~~yi~te~~f~~~rl~~~~~~~gl~~~~~~~~i~i~~~~ 170 (310)
T TIGR02236 91 GIETQAITEVFGEFGSGKTQICHQLAVNVQLPEEKGGLGGKAVYIDTENTFRPERIMQMAEARGLDPDEVLKNIYVARAY 170 (310)
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCcccCCCcceEEEEECCCCCCHHHHHHHHHHcCCCHHHHhhceEEEecC
Confidence 45566678899999999999999998653 23566666543 1 110 0011100
Q ss_pred -------HHHHHHHHHHhc--CCeEEEEcCcchhhhhcCCcccccchhHHHHHHHHHHHHhcCCCCCCcEEEEEecC
Q 007575 412 -------RVRDLFARAKKE--APSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATN 479 (597)
Q Consensus 412 -------~vr~lF~~A~~~--aP~ILfIDEIDaL~~~r~~~~~~~~~~e~eqtLnqLL~emdg~~~~~~VIVIaaTN 479 (597)
.+..+.+..... .+++|+||-|-++....-.+ .+...++.+.+++++..|..+....++.|+.+..
T Consensus 171 ~~~~~~~lld~l~~~i~~~~~~~~lVVIDSisa~~r~e~~~--~~~~~~r~~~l~~~~~~L~~~a~~~~~~v~~tnq 245 (310)
T TIGR02236 171 NSNHQMLLVEKAEDLIKELNNPVKLLIVDSLTSHFRAEYVG--RGALAERQQKLNKHLHDLLRLADLYNAAVVVTNQ 245 (310)
T ss_pred CHHHHHHHHHHHHHHHHhcCCCceEEEEecchHhhhHhhcC--chhHHHHHHHHHHHHHHHHHHHHHhCcEEEEece
Confidence 112222333333 36799999998876542111 1122334455666666555444455566665543
No 377
>PTZ00088 adenylate kinase 1; Provisional
Probab=96.94 E-value=0.00084 Score=68.12 Aligned_cols=34 Identities=26% Similarity=0.519 Sum_probs=29.7
Q ss_pred CCCceEEeCCCCChHHHHHHHHHHhcCCCeeeec
Q 007575 364 PPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCS 397 (597)
Q Consensus 364 ~p~gVLL~GPPGTGKT~LArAIA~el~~pfi~is 397 (597)
.|..|+|.||||+|||++|+.+|..++++++++.
T Consensus 5 ~~mrIvl~G~PGsGK~T~a~~La~~~g~~~is~g 38 (229)
T PTZ00088 5 GPLKIVLFGAPGVGKGTFAEILSKKENLKHINMG 38 (229)
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHhCCcEEECC
Confidence 3455999999999999999999999998887663
No 378
>PRK06696 uridine kinase; Validated
Probab=96.93 E-value=0.0012 Score=66.36 Aligned_cols=39 Identities=33% Similarity=0.497 Sum_probs=34.0
Q ss_pred CCCceEEeCCCCChHHHHHHHHHHhc---CCCeeeechhhhH
Q 007575 364 PPRGVLLVGLPGTGKTLLAKAVAGEA---EVPFISCSASEFV 402 (597)
Q Consensus 364 ~p~gVLL~GPPGTGKT~LArAIA~el---~~pfi~is~sef~ 402 (597)
.|.-|.+.|++|+|||++|+.|+..+ |.+++.++.++|.
T Consensus 21 ~~~iI~I~G~sgsGKSTlA~~L~~~l~~~g~~v~~~~~Ddf~ 62 (223)
T PRK06696 21 RPLRVAIDGITASGKTTFADELAEEIKKRGRPVIRASIDDFH 62 (223)
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEecccccc
Confidence 46678899999999999999999988 7788888877774
No 379
>PRK13833 conjugal transfer protein TrbB; Provisional
Probab=96.93 E-value=0.0011 Score=70.70 Aligned_cols=69 Identities=23% Similarity=0.308 Sum_probs=46.8
Q ss_pred CCceEEeCCCCChHHHHHHHHHHhc-----CCCeeeec-hhhhHHH------HhhcchHHHHHHHHHHHhcCCeEEEEcC
Q 007575 365 PRGVLLVGLPGTGKTLLAKAVAGEA-----EVPFISCS-ASEFVEL------YVGMGASRVRDLFARAKKEAPSIIFIDE 432 (597)
Q Consensus 365 p~gVLL~GPPGTGKT~LArAIA~el-----~~pfi~is-~sef~~~------~vG~~e~~vr~lF~~A~~~aP~ILfIDE 432 (597)
.+++|++|++|+|||+++++++.+. +..++.+. ..|+.-. +.....-...++++.+....|..|++.|
T Consensus 144 ~~nilI~G~tGSGKTTll~aL~~~i~~~~~~~rivtiEd~~El~~~~~n~v~l~~~~~~~~~~lv~~aLR~~PD~IivGE 223 (323)
T PRK13833 144 RLNIVISGGTGSGKTTLANAVIAEIVASAPEDRLVILEDTAEIQCAAENAVALHTSDTVDMARLLKSTMRLRPDRIIVGE 223 (323)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHhcCCCCceEEEecCCcccccCCCCEEEeccCCCcCHHHHHHHHhCCCCCEEEEee
Confidence 4579999999999999999999875 22233332 1121100 0011223467888889999999999999
Q ss_pred c
Q 007575 433 I 433 (597)
Q Consensus 433 I 433 (597)
+
T Consensus 224 i 224 (323)
T PRK13833 224 V 224 (323)
T ss_pred c
Confidence 8
No 380
>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate. The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.
Probab=96.92 E-value=0.00073 Score=62.93 Aligned_cols=28 Identities=36% Similarity=0.763 Sum_probs=25.1
Q ss_pred eEEeCCCCChHHHHHHHHHHhcCCCeee
Q 007575 368 VLLVGLPGTGKTLLAKAVAGEAEVPFIS 395 (597)
Q Consensus 368 VLL~GPPGTGKT~LArAIA~el~~pfi~ 395 (597)
++|+|+||+|||++|+.++..++.+++.
T Consensus 2 i~l~G~~GsGKST~a~~l~~~~~~~~i~ 29 (150)
T cd02021 2 IVVMGVSGSGKSTVGKALAERLGAPFID 29 (150)
T ss_pred EEEEcCCCCCHHHHHHHHHhhcCCEEEe
Confidence 6899999999999999999998877654
No 381
>PRK00279 adk adenylate kinase; Reviewed
Probab=96.92 E-value=0.0019 Score=64.24 Aligned_cols=29 Identities=41% Similarity=0.665 Sum_probs=26.8
Q ss_pred eEEeCCCCChHHHHHHHHHHhcCCCeeee
Q 007575 368 VLLVGLPGTGKTLLAKAVAGEAEVPFISC 396 (597)
Q Consensus 368 VLL~GPPGTGKT~LArAIA~el~~pfi~i 396 (597)
|+++||||+|||++|+.+|..++++.+++
T Consensus 3 I~v~G~pGsGKsT~a~~la~~~~~~~is~ 31 (215)
T PRK00279 3 LILLGPPGAGKGTQAKFIAEKYGIPHIST 31 (215)
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCcEEEC
Confidence 89999999999999999999999877765
No 382
>PRK13894 conjugal transfer ATPase TrbB; Provisional
Probab=96.91 E-value=0.001 Score=70.72 Aligned_cols=70 Identities=23% Similarity=0.326 Sum_probs=46.8
Q ss_pred CCceEEeCCCCChHHHHHHHHHHhc-----CCCeeeec-hhhhHH---H---HhhcchHHHHHHHHHHHhcCCeEEEEcC
Q 007575 365 PRGVLLVGLPGTGKTLLAKAVAGEA-----EVPFISCS-ASEFVE---L---YVGMGASRVRDLFARAKKEAPSIIFIDE 432 (597)
Q Consensus 365 p~gVLL~GPPGTGKT~LArAIA~el-----~~pfi~is-~sef~~---~---~vG~~e~~vr~lF~~A~~~aP~ILfIDE 432 (597)
.++++++|++|+|||+++++++.+. ...++.+. ..++.- . +.....-...++++.+....|+.|++.|
T Consensus 148 ~~~ilI~G~tGSGKTTll~aL~~~~~~~~~~~rivtIEd~~El~~~~~~~v~~~~~~~~~~~~ll~~aLR~~PD~IivGE 227 (319)
T PRK13894 148 HRNILVIGGTGSGKTTLVNAIINEMVIQDPTERVFIIEDTGEIQCAAENYVQYHTSIDVNMTALLKTTLRMRPDRILVGE 227 (319)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHhhhhcCCCceEEEEcCCCccccCCCCEEEEecCCCCCHHHHHHHHhcCCCCEEEEec
Confidence 4579999999999999999999863 12222221 111110 0 0111223567889999999999999999
Q ss_pred cc
Q 007575 433 ID 434 (597)
Q Consensus 433 ID 434 (597)
+-
T Consensus 228 iR 229 (319)
T PRK13894 228 VR 229 (319)
T ss_pred cC
Confidence 83
No 383
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=96.91 E-value=0.005 Score=57.62 Aligned_cols=71 Identities=30% Similarity=0.493 Sum_probs=43.0
Q ss_pred CCCCceEEeCCCCChHHHHHHHHHHhcCCC--eeeechh---hhHHHHhhcchHHHHHHHHHHHhcCCeEEEEcCcch
Q 007575 363 RPPRGVLLVGLPGTGKTLLAKAVAGEAEVP--FISCSAS---EFVELYVGMGASRVRDLFARAKKEAPSIIFIDEIDA 435 (597)
Q Consensus 363 ~~p~gVLL~GPPGTGKT~LArAIA~el~~p--fi~is~s---ef~~~~vG~~e~~vr~lF~~A~~~aP~ILfIDEIDa 435 (597)
.+...+.|.||+|+|||+|++++++..... -+.++.. .++.. ...+ .+-+-.+..|....|.++++||-..
T Consensus 24 ~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~~~~~i~~~~~-lS~G-~~~rv~laral~~~p~illlDEP~~ 99 (144)
T cd03221 24 NPGDRIGLVGRNGAGKSTLLKLIAGELEPDEGIVTWGSTVKIGYFEQ-LSGG-EKMRLALAKLLLENPNLLLLDEPTN 99 (144)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHcCCCCCCceEEEECCeEEEEEEcc-CCHH-HHHHHHHHHHHhcCCCEEEEeCCcc
Confidence 445568899999999999999999975310 0111110 00000 1111 2334445666677889999999754
No 384
>PLN02200 adenylate kinase family protein
Probab=96.91 E-value=0.00083 Score=68.29 Aligned_cols=41 Identities=20% Similarity=0.327 Sum_probs=32.9
Q ss_pred CCCCCceEEeCCCCChHHHHHHHHHHhcCCCeeeechhhhHHH
Q 007575 362 ARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFVEL 404 (597)
Q Consensus 362 ~~~p~gVLL~GPPGTGKT~LArAIA~el~~pfi~is~sef~~~ 404 (597)
.+.|.-++|.||||+|||++|+.+|.++|++. +++++++..
T Consensus 40 ~~~~~ii~I~G~PGSGKsT~a~~La~~~g~~h--is~gdllR~ 80 (234)
T PLN02200 40 EKTPFITFVLGGPGSGKGTQCEKIVETFGFKH--LSAGDLLRR 80 (234)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHhCCeE--EEccHHHHH
Confidence 45567799999999999999999999998765 555666543
No 385
>PHA02774 E1; Provisional
Probab=96.91 E-value=0.0033 Score=71.25 Aligned_cols=33 Identities=21% Similarity=0.336 Sum_probs=27.4
Q ss_pred CCceEEeCCCCChHHHHHHHHHHhcCCCeee-ec
Q 007575 365 PRGVLLVGLPGTGKTLLAKAVAGEAEVPFIS-CS 397 (597)
Q Consensus 365 p~gVLL~GPPGTGKT~LArAIA~el~~pfi~-is 397 (597)
..+++|+||||||||++|.+|++.++-.++. ++
T Consensus 434 knciv~~GPP~TGKS~fa~sL~~~L~G~vi~fvN 467 (613)
T PHA02774 434 KNCLVIYGPPDTGKSMFCMSLIKFLKGKVISFVN 467 (613)
T ss_pred ccEEEEECCCCCCHHHHHHHHHHHhCCCEEEEEE
Confidence 4589999999999999999999998654444 44
No 386
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.91 E-value=0.0024 Score=60.11 Aligned_cols=73 Identities=30% Similarity=0.417 Sum_probs=44.2
Q ss_pred CCCCceEEeCCCCChHHHHHHHHHHhcCCC--eeeechhhhH-------HHHhh-----cchHHHHHHHHHHHhcCCeEE
Q 007575 363 RPPRGVLLVGLPGTGKTLLAKAVAGEAEVP--FISCSASEFV-------ELYVG-----MGASRVRDLFARAKKEAPSII 428 (597)
Q Consensus 363 ~~p~gVLL~GPPGTGKT~LArAIA~el~~p--fi~is~sef~-------~~~vG-----~~e~~vr~lF~~A~~~aP~IL 428 (597)
.+...+.|.||+|+|||+|++++++..... -+.+++.... ...++ .+-...+-.+..+-...|.++
T Consensus 23 ~~g~~~~i~G~nGsGKStll~~l~g~~~~~~G~i~~~~~~~~~~~~~~~~~~i~~~~qlS~G~~~r~~l~~~l~~~~~i~ 102 (157)
T cd00267 23 KAGEIVALVGPNGSGKSTLLRAIAGLLKPTSGEILIDGKDIAKLPLEELRRRIGYVPQLSGGQRQRVALARALLLNPDLL 102 (157)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEEcccCCHHHHHhceEEEeeCCHHHHHHHHHHHHHhcCCCEE
Confidence 344568999999999999999999976421 1222222110 01011 011233344556666678899
Q ss_pred EEcCcch
Q 007575 429 FIDEIDA 435 (597)
Q Consensus 429 fIDEIDa 435 (597)
++||...
T Consensus 103 ilDEp~~ 109 (157)
T cd00267 103 LLDEPTS 109 (157)
T ss_pred EEeCCCc
Confidence 9999854
No 387
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.91 E-value=0.0064 Score=66.42 Aligned_cols=105 Identities=17% Similarity=0.222 Sum_probs=59.9
Q ss_pred CCCceEEeCCCCChHHHHHHHHHHhc---CCCeeeechhhh----HHH---H---------hhcchHHHHHHHHHHHh-c
Q 007575 364 PPRGVLLVGLPGTGKTLLAKAVAGEA---EVPFISCSASEF----VEL---Y---------VGMGASRVRDLFARAKK-E 423 (597)
Q Consensus 364 ~p~gVLL~GPPGTGKT~LArAIA~el---~~pfi~is~sef----~~~---~---------vG~~e~~vr~lF~~A~~-~ 423 (597)
.|+.++|+||+|+|||+++..+|.++ +..+..++++.+ .+. | +......+.+.+..+.. .
T Consensus 240 ~~~vI~LVGptGvGKTTTiaKLA~~L~~~GkkVglI~aDt~RiaAvEQLk~yae~lgipv~v~~d~~~L~~aL~~lk~~~ 319 (436)
T PRK11889 240 EVQTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSRIGTVQQLQDYVKTIGFEVIAVRDEAAMTRALTYFKEEA 319 (436)
T ss_pred CCcEEEEECCCCCcHHHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHHhhhcCCcEEecCCHHHHHHHHHHHHhcc
Confidence 36789999999999999999999765 334444444322 111 1 12344556666666654 2
Q ss_pred CCeEEEEcCcchhhhhcCCcccccchhHHHHHHHHHHHHhcCCCCCCcEEEEEecCCC
Q 007575 424 APSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATNRS 481 (597)
Q Consensus 424 aP~ILfIDEIDaL~~~r~~~~~~~~~~e~eqtLnqLL~emdg~~~~~~VIVIaaTNrp 481 (597)
...+|+||-...... + ...+.++...++...+...++|+.+|...
T Consensus 320 ~~DvVLIDTaGRs~k----------d---~~lm~EL~~~lk~~~PdevlLVLsATtk~ 364 (436)
T PRK11889 320 RVDYILIDTAGKNYR----------A---SETVEEMIETMGQVEPDYICLTLSASMKS 364 (436)
T ss_pred CCCEEEEeCccccCc----------C---HHHHHHHHHHHhhcCCCeEEEEECCccCh
Confidence 356999987643221 1 23345555555433333445555555444
No 388
>PF05272 VirE: Virulence-associated protein E; InterPro: IPR007936 This family contains several bacterial virulence-associated protein E like proteins.
Probab=96.89 E-value=0.0048 Score=61.30 Aligned_cols=111 Identities=28% Similarity=0.461 Sum_probs=63.5
Q ss_pred CCCCCCceEEeCCCCChHHHHHHHHHHhcCCCeeeechhhhHHHHhhcchHHHHHHHHHHHhcCCeEEEEcCcchhhhhc
Q 007575 361 GARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFVELYVGMGASRVRDLFARAKKEAPSIIFIDEIDAVAKSR 440 (597)
Q Consensus 361 g~~~p~gVLL~GPPGTGKT~LArAIA~el~~pfi~is~sef~~~~vG~~e~~vr~lF~~A~~~aP~ILfIDEIDaL~~~r 440 (597)
|.+....++|.|+-|+|||++.+.|+.+ ++.-+.... ........ .... -|+.|||++.+.+..
T Consensus 48 g~k~d~~lvl~G~QG~GKStf~~~L~~~----~~~d~~~~~------~~kd~~~~----l~~~--~iveldEl~~~~k~~ 111 (198)
T PF05272_consen 48 GCKNDTVLVLVGKQGIGKSTFFRKLGPE----YFSDSINDF------DDKDFLEQ----LQGK--WIVELDELDGLSKKD 111 (198)
T ss_pred CCcCceeeeEecCCcccHHHHHHHHhHH----hccCccccC------CCcHHHHH----HHHh--HheeHHHHhhcchhh
Confidence 5566667889999999999999999666 222111110 01111111 1111 289999999876321
Q ss_pred CCcccccchhHHHHHHHHHHHH-hcCCCC---------CCcEEEEEecCCCCCC-ChhhhCCCCcceEEEecC
Q 007575 441 DGRFRIVSNDEREQTLNQLLTE-MDGFDS---------NSAVIVLGATNRSDVL-DPALRRPGRFDRVVMVET 502 (597)
Q Consensus 441 ~~~~~~~~~~e~eqtLnqLL~e-mdg~~~---------~~~VIVIaaTNrpd~L-D~aLlRpgRFd~~I~v~~ 502 (597)
...+..+++. .+.+.. +...++|+|||..+-| |+.=-| ||- .|.+..
T Consensus 112 ------------~~~lK~~iT~~~~~~R~pY~~~~~~~~R~~~figTtN~~~~L~D~TGnR--Rf~-~v~v~~ 169 (198)
T PF05272_consen 112 ------------VEALKSFITRRTDTYRPPYGRDPEEFPRRAVFIGTTNDDDFLKDPTGNR--RFW-PVEVSK 169 (198)
T ss_pred ------------HHHHHHHhcccceeeecCCcCcceeeceeEEEEeccCCcceeeCCCCCe--EEE-EEEEcC
Confidence 1233334432 122211 2357889999998766 555556 773 555554
No 389
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=96.89 E-value=0.0058 Score=58.45 Aligned_cols=74 Identities=28% Similarity=0.415 Sum_probs=44.4
Q ss_pred CCCCCceEEeCCCCChHHHHHHHHHHhcCC-----------Ceeee---------chhhhHHH-Hhh--cchHHHHHHHH
Q 007575 362 ARPPRGVLLVGLPGTGKTLLAKAVAGEAEV-----------PFISC---------SASEFVEL-YVG--MGASRVRDLFA 418 (597)
Q Consensus 362 ~~~p~gVLL~GPPGTGKT~LArAIA~el~~-----------pfi~i---------s~sef~~~-~vG--~~e~~vr~lF~ 418 (597)
..+..-+.|.||+|+|||+|++.+++.... .+.++ +..+.+.. ... .+..+.+-.+.
T Consensus 24 i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~~~~~i~~~~q~~~~~~~tv~~nl~~~~~~~LS~G~~~rv~la 103 (166)
T cd03223 24 IKPGDRLLITGPSGTGKSSLFRALAGLWPWGSGRIGMPEGEDLLFLPQRPYLPLGTLREQLIYPWDDVLSGGEQQRLAFA 103 (166)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCCceEEEECCCCccccccHHHHhhccCCCCCCHHHHHHHHHH
Confidence 344556899999999999999999987521 01111 11111110 000 11223445566
Q ss_pred HHHhcCCeEEEEcCcch
Q 007575 419 RAKKEAPSIIFIDEIDA 435 (597)
Q Consensus 419 ~A~~~aP~ILfIDEIDa 435 (597)
.|....|.++++||-.+
T Consensus 104 ral~~~p~~lllDEPt~ 120 (166)
T cd03223 104 RLLLHKPKFVFLDEATS 120 (166)
T ss_pred HHHHcCCCEEEEECCcc
Confidence 67778899999999754
No 390
>PHA02624 large T antigen; Provisional
Probab=96.89 E-value=0.0023 Score=72.77 Aligned_cols=122 Identities=16% Similarity=0.126 Sum_probs=69.1
Q ss_pred CCCCCCceEEeCCCCChHHHHHHHHHHhcCCCeeeechhhhHHHHhhcchHHHHHHHHHHHhcCCeEEEEcCcchhhhhc
Q 007575 361 GARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFVELYVGMGASRVRDLFARAKKEAPSIIFIDEIDAVAKSR 440 (597)
Q Consensus 361 g~~~p~gVLL~GPPGTGKT~LArAIA~el~~pfi~is~sef~~~~vG~~e~~vr~lF~~A~~~aP~ILfIDEIDaL~~~r 440 (597)
|.+..+.++|+||||||||+++.++++.++-..+.++++.-... |...-.....+++||++-.-.-..
T Consensus 427 giPKk~~il~~GPpnTGKTtf~~sLl~~L~G~vlsVNsPt~ks~------------FwL~pl~D~~~~l~dD~t~~~~~~ 494 (647)
T PHA02624 427 NVPKRRYWLFKGPVNSGKTTLAAALLDLCGGKSLNVNCPPDKLN------------FELGCAIDQFMVVFEDVKGQPADN 494 (647)
T ss_pred cCCCCeEEEEECCCCCCHHHHHHHHHHHcCCeEEEeeCCcchhH------------HHhhhhhhceEEEeeecccccccc
Confidence 45555689999999999999999999999666777875542211 111111112378888875322210
Q ss_pred CC-cccccchhHHHHHHHHHHHHhcCC-CC------CCc-----EEEEEecCCCCCCChhhhCCCCcceEEEecC
Q 007575 441 DG-RFRIVSNDEREQTLNQLLTEMDGF-DS------NSA-----VIVLGATNRSDVLDPALRRPGRFDRVVMVET 502 (597)
Q Consensus 441 ~~-~~~~~~~~e~eqtLnqLL~emdg~-~~------~~~-----VIVIaaTNrpd~LD~aLlRpgRFd~~I~v~~ 502 (597)
.. ..+.+.+ -+..|-..+||. .- ... -.+|.|||. ..|+..+.- ||..++.|..
T Consensus 495 ~~Lp~G~~~d-----Nl~~lRn~LDG~V~v~ld~KH~n~~q~~~PPlliT~Ne-y~iP~T~~~--Rf~~~~~F~~ 561 (647)
T PHA02624 495 KDLPSGQGMN-----NLDNLRDYLDGSVPVNLEKKHLNKRSQIFPPGIVTMNE-YLIPQTVKA--RFAKVLDFKP 561 (647)
T ss_pred ccCCcccccc-----hhhHHHhhcCCCCccccchhccCchhccCCCeEEeecC-cccchhHHH--HHHHhccccc
Confidence 00 0000010 113344555654 10 000 124447774 677888877 8988888864
No 391
>PRK14530 adenylate kinase; Provisional
Probab=96.89 E-value=0.00087 Score=66.72 Aligned_cols=30 Identities=33% Similarity=0.552 Sum_probs=27.4
Q ss_pred ceEEeCCCCChHHHHHHHHHHhcCCCeeee
Q 007575 367 GVLLVGLPGTGKTLLAKAVAGEAEVPFISC 396 (597)
Q Consensus 367 gVLL~GPPGTGKT~LArAIA~el~~pfi~i 396 (597)
.|+|.||||+|||++|+.+|..++.+++.+
T Consensus 5 ~I~i~G~pGsGKsT~~~~La~~~~~~~i~~ 34 (215)
T PRK14530 5 RILLLGAPGAGKGTQSSNLAEEFGVEHVTT 34 (215)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCeEEec
Confidence 599999999999999999999999887755
No 392
>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS). The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.
Probab=96.88 E-value=0.0031 Score=59.40 Aligned_cols=36 Identities=25% Similarity=0.458 Sum_probs=29.9
Q ss_pred eEEeCCCCChHHHHHHHHHHhc---CCCeeeechhhhHH
Q 007575 368 VLLVGLPGTGKTLLAKAVAGEA---EVPFISCSASEFVE 403 (597)
Q Consensus 368 VLL~GPPGTGKT~LArAIA~el---~~pfi~is~sef~~ 403 (597)
++|+|+||+|||++|+.++..+ +.+.+.++...+..
T Consensus 2 i~i~G~~GsGKSTla~~L~~~l~~~g~~~~~i~~d~~r~ 40 (149)
T cd02027 2 IWLTGLSGSGKSTIARALEEKLFQRGRPVYVLDGDNVRH 40 (149)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEEcCHHHHH
Confidence 6899999999999999999987 66677777665543
No 393
>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein. This is thought to be an ATPase involved in viral DNA packaging [].
Probab=96.88 E-value=0.019 Score=58.88 Aligned_cols=132 Identities=15% Similarity=0.253 Sum_probs=73.8
Q ss_pred CCCceEEeCCCCChHHHHHHHHHHhcCC---Ceeeechh--hhHHHH-----hhc--c----hH-------HHHHHHHHH
Q 007575 364 PPRGVLLVGLPGTGKTLLAKAVAGEAEV---PFISCSAS--EFVELY-----VGM--G----AS-------RVRDLFARA 420 (597)
Q Consensus 364 ~p~gVLL~GPPGTGKT~LArAIA~el~~---pfi~is~s--ef~~~~-----vG~--~----e~-------~vr~lF~~A 420 (597)
.|-.+.+.|++|||||++++.+...+.- .++.+... .....| +.. . +. .+.+.....
T Consensus 12 ~~fr~viIG~sGSGKT~li~~lL~~~~~~f~~I~l~t~~~n~~~~~~i~p~~i~~~~~~e~le~~l~~~k~~I~k~~~k~ 91 (241)
T PF04665_consen 12 DPFRMVIIGKSGSGKTTLIKSLLYYLRHKFDHIFLITPEYNNEYYKYIWPDHIFKVFDKEELEYILIRQKEKIEKYIKKS 91 (241)
T ss_pred CCceEEEECCCCCCHHHHHHHHHHhhcccCCEEEEEecCCchhhhhhcchhhccccccHHHHHHHHHHHHHHHHHHhhhh
Confidence 4557999999999999999999876532 11222111 101001 000 0 00 111111111
Q ss_pred Hh---cCCeEEEEcCcchhhhhcCCcccccchhHHHHHHHHHHHHhcCCCCCCcEEEEEecCCCCCCChhhhCCCCcceE
Q 007575 421 KK---EAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATNRSDVLDPALRRPGRFDRV 497 (597)
Q Consensus 421 ~~---~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~eqtLnqLL~emdg~~~~~~VIVIaaTNrpd~LD~aLlRpgRFd~~ 497 (597)
.. ..+++|+||++-. .....+.+.+++.. ...-++-+|..+.....|++.++. -.+..
T Consensus 92 ~~~k~~~~~LiIlDD~~~-------------~~~k~~~l~~~~~~----gRH~~is~i~l~Q~~~~lp~~iR~--n~~y~ 152 (241)
T PF04665_consen 92 PQKKNNPRFLIILDDLGD-------------KKLKSKILRQFFNN----GRHYNISIIFLSQSYFHLPPNIRS--NIDYF 152 (241)
T ss_pred cccCCCCCeEEEEeCCCC-------------chhhhHHHHHHHhc----ccccceEEEEEeeecccCCHHHhh--cceEE
Confidence 11 2367999999732 01223455666543 224457888888888999999866 56766
Q ss_pred EEecCCCHHHHHHHHHHH
Q 007575 498 VMVETPDKIGREAILKVH 515 (597)
Q Consensus 498 I~v~~Pd~~eR~eILk~~ 515 (597)
+.+. -+..+..-|++.+
T Consensus 153 i~~~-~s~~dl~~i~~~~ 169 (241)
T PF04665_consen 153 IIFN-NSKRDLENIYRNM 169 (241)
T ss_pred EEec-CcHHHHHHHHHhc
Confidence 6564 4666666665554
No 394
>PLN03187 meiotic recombination protein DMC1 homolog; Provisional
Probab=96.87 E-value=0.0026 Score=68.40 Aligned_cols=116 Identities=21% Similarity=0.185 Sum_probs=63.7
Q ss_pred CCCCCCceEEeCCCCChHHHHHHHHHHhc---------CCCeeeechhh------hHHHH--hhcch-------------
Q 007575 361 GARPPRGVLLVGLPGTGKTLLAKAVAGEA---------EVPFISCSASE------FVELY--VGMGA------------- 410 (597)
Q Consensus 361 g~~~p~gVLL~GPPGTGKT~LArAIA~el---------~~pfi~is~se------f~~~~--vG~~e------------- 410 (597)
|.....-..|+||||||||.|+..+|-.. +..+++++... +.... .|...
T Consensus 122 Gi~~G~ItEI~G~~GsGKTql~lqlav~~qlp~~~gg~~~~vvyIdTE~tF~peRl~~ia~~~g~d~~~~l~~I~~~~~~ 201 (344)
T PLN03187 122 GIETRCITEAFGEFRSGKTQLAHTLCVTTQLPTEMGGGNGKVAYIDTEGTFRPDRIVPIAERFGMDADAVLDNIIYARAY 201 (344)
T ss_pred CCCCCeEEEEecCCCCChhHHHHHHHHHHhcchhhCCCCceEEEEEcCCCCCHHHHHHHHHHcCCChhhhcCeEEEecCC
Confidence 45556668899999999999999886322 23455555432 11110 01110
Q ss_pred ------HHHHHHHHHHHhcCCeEEEEcCcchhhhhcCCcccccchhHHHHHHHHHHHHhcCCCCCCcEEEEEec
Q 007575 411 ------SRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGAT 478 (597)
Q Consensus 411 ------~~vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~eqtLnqLL~emdg~~~~~~VIVIaaT 478 (597)
..+..+-.......+++|+||-|-++.+..-.+ .+...++.+.+.+++..|..+....++.||.+.
T Consensus 202 ~~e~~~~~l~~l~~~i~~~~~~LvVIDSital~r~~~~~--rg~l~~rq~~L~~~~~~L~~lA~~~~vavvvTN 273 (344)
T PLN03187 202 TYEHQYNLLLGLAAKMAEEPFRLLIVDSVIALFRVDFTG--RGELAERQQKLAQMLSRLTKIAEEFNVAVYMTN 273 (344)
T ss_pred CHHHHHHHHHHHHHHHHhcCCCEEEEeCcHHhhhccccC--ccchHHHHHHHHHHHHHHHHHHHHcCCEEEEEe
Confidence 111222222334568899999999987642211 112234555567766666544444455555544
No 395
>smart00534 MUTSac ATPase domain of DNA mismatch repair MUTS family.
Probab=96.87 E-value=0.0077 Score=58.73 Aligned_cols=19 Identities=26% Similarity=0.405 Sum_probs=18.1
Q ss_pred eEEeCCCCChHHHHHHHHH
Q 007575 368 VLLVGLPGTGKTLLAKAVA 386 (597)
Q Consensus 368 VLL~GPPGTGKT~LArAIA 386 (597)
++|+||.|.|||++.|.++
T Consensus 2 ~~ltG~N~~GKst~l~~i~ 20 (185)
T smart00534 2 VIITGPNMGGKSTYLRQVG 20 (185)
T ss_pred EEEECCCCCcHHHHHHHHH
Confidence 6899999999999999998
No 396
>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family. This model represents a subfamily of proteins that includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases.
Probab=96.86 E-value=0.00085 Score=63.45 Aligned_cols=32 Identities=31% Similarity=0.621 Sum_probs=26.6
Q ss_pred eEEeCCCCChHHHHHHHHHHhcCCCeeeechhhh
Q 007575 368 VLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEF 401 (597)
Q Consensus 368 VLL~GPPGTGKT~LArAIA~el~~pfi~is~sef 401 (597)
++|.||||+|||++|+.+++.++.+++ +..++
T Consensus 1 i~l~G~~GsGKSTla~~l~~~l~~~~v--~~D~~ 32 (163)
T TIGR01313 1 FVLMGVAGSGKSTIASALAHRLGAKFI--EGDDL 32 (163)
T ss_pred CEEECCCCCCHHHHHHHHHHhcCCeEE--eCccc
Confidence 578999999999999999999987765 44444
No 397
>PRK13764 ATPase; Provisional
Probab=96.86 E-value=0.0011 Score=75.72 Aligned_cols=70 Identities=20% Similarity=0.301 Sum_probs=42.1
Q ss_pred CCceEEeCCCCChHHHHHHHHHHhcC---CCeeeec-hhhh-----HHHHhhcchHHHHHHHHHHHhcCCeEEEEcCcch
Q 007575 365 PRGVLLVGLPGTGKTLLAKAVAGEAE---VPFISCS-ASEF-----VELYVGMGASRVRDLFARAKKEAPSIIFIDEIDA 435 (597)
Q Consensus 365 p~gVLL~GPPGTGKT~LArAIA~el~---~pfi~is-~sef-----~~~~vG~~e~~vr~lF~~A~~~aP~ILfIDEIDa 435 (597)
..++|++||||+|||+++++++.++. ..+..+. ..++ +..+.. ...........+....|++|++||+-.
T Consensus 257 ~~~ILIsG~TGSGKTTll~AL~~~i~~~~riV~TiEDp~El~~~~~i~q~~~-~~~~~~~~~~~lLR~rPD~IivGEiRd 335 (602)
T PRK13764 257 AEGILIAGAPGAGKSTFAQALAEFYADMGKIVKTMESPRDLQVPPEITQYSK-LEGSMEETADILLLVRPDYTIYDEMRK 335 (602)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHhhCCCEEEEECCCccccCCCcceEEee-ccccHHHHHHHHHhhCCCEEEECCCCC
Confidence 45799999999999999999998764 2222221 1121 111100 001122333344567899999999753
No 398
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=96.85 E-value=0.0045 Score=59.44 Aligned_cols=103 Identities=24% Similarity=0.376 Sum_probs=57.4
Q ss_pred CCCceEEeCCCCChHHHHHHHHHHhcCCC--eeeechhh--------hHHH--Hh---------------hcchHHHHHH
Q 007575 364 PPRGVLLVGLPGTGKTLLAKAVAGEAEVP--FISCSASE--------FVEL--YV---------------GMGASRVRDL 416 (597)
Q Consensus 364 ~p~gVLL~GPPGTGKT~LArAIA~el~~p--fi~is~se--------f~~~--~v---------------G~~e~~vr~l 416 (597)
+..-+.|.||+|+|||+|++.+++..... -+.+++.+ +... |+ -.+..+.+-.
T Consensus 27 ~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~tv~~~lLS~G~~qrv~ 106 (173)
T cd03246 27 PGESLAIIGPSGSGKSTLARLILGLLRPTSGRVRLDGADISQWDPNELGDHVGYLPQDDELFSGSIAENILSGGQRQRLG 106 (173)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhccCCCCCeEEECCEEcccCCHHHHHhheEEECCCCccccCcHHHHCcCHHHHHHHH
Confidence 34458899999999999999999865210 01111110 0000 00 0112234455
Q ss_pred HHHHHhcCCeEEEEcCcchhhhhcCCcccccchhHHHHHHHHHHHHhcCCCCCCcEEEEEecCCC
Q 007575 417 FARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATNRS 481 (597)
Q Consensus 417 F~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~eqtLnqLL~emdg~~~~~~VIVIaaTNrp 481 (597)
+..|....|.++++||--+- .+....+.+.+++..+.. . +..+|.+|+..
T Consensus 107 la~al~~~p~~lllDEPt~~-----------LD~~~~~~l~~~l~~~~~---~-~~tii~~sh~~ 156 (173)
T cd03246 107 LARALYGNPRILVLDEPNSH-----------LDVEGERALNQAIAALKA---A-GATRIVIAHRP 156 (173)
T ss_pred HHHHHhcCCCEEEEECCccc-----------cCHHHHHHHHHHHHHHHh---C-CCEEEEEeCCH
Confidence 66777788999999996432 233334455555555531 1 33455566654
No 399
>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]
Probab=96.85 E-value=0.005 Score=72.00 Aligned_cols=69 Identities=26% Similarity=0.337 Sum_probs=44.4
Q ss_pred HHHHHHHHHHHhcCCeEEEEcCcchhhhhcCCcccccchhHHHHHHHHHHHHhcCCCCCCcEEEEEecCCCCCCChhhhC
Q 007575 411 SRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATNRSDVLDPALRR 490 (597)
Q Consensus 411 ~~vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~eqtLnqLL~emdg~~~~~~VIVIaaTNrpd~LD~aLlR 490 (597)
++-|-++.+|.-..|.||++||.-+ .-+.+.++.+.+-|.++.. +..+|..|.|+ ...+
T Consensus 614 QrQrlalARaLl~~P~ILlLDEaTS-----------aLD~~sE~~I~~~L~~~~~-----~~T~I~IaHRl-----~ti~ 672 (709)
T COG2274 614 QRQRLALARALLSKPKILLLDEATS-----------ALDPETEAIILQNLLQILQ-----GRTVIIIAHRL-----STIR 672 (709)
T ss_pred HHHHHHHHHHhccCCCEEEEeCccc-----------ccCHhHHHHHHHHHHHHhc-----CCeEEEEEccc-----hHhh
Confidence 3445566777778899999999743 2345566677666666642 23455667765 3334
Q ss_pred CCCcceEEEecC
Q 007575 491 PGRFDRVVMVET 502 (597)
Q Consensus 491 pgRFd~~I~v~~ 502 (597)
++|+.+.++.
T Consensus 673 --~adrIiVl~~ 682 (709)
T COG2274 673 --SADRIIVLDQ 682 (709)
T ss_pred --hccEEEEccC
Confidence 6777777654
No 400
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=96.84 E-value=0.015 Score=56.07 Aligned_cols=28 Identities=25% Similarity=0.515 Sum_probs=24.0
Q ss_pred CCCCCceEEeCCCCChHHHHHHHHHHhc
Q 007575 362 ARPPRGVLLVGLPGTGKTLLAKAVAGEA 389 (597)
Q Consensus 362 ~~~p~gVLL~GPPGTGKT~LArAIA~el 389 (597)
..+...+.|.||+|+|||+|++.+++..
T Consensus 25 i~~Ge~~~i~G~nGsGKStLl~~l~G~~ 52 (178)
T cd03247 25 LKQGEKIALLGRSGSGKSTLLQLLTGDL 52 (178)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhccC
Confidence 3445568999999999999999999975
No 401
>TIGR02525 plasmid_TraJ plasmid transfer ATPase TraJ. Members of this protein family are predicted ATPases associated with plasmid transfer loci in bacteria. This family is most similar to the DotB ATPase of a type-IV secretion-like system of obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii (TIGR02524).
Probab=96.83 E-value=0.0019 Score=70.03 Aligned_cols=68 Identities=24% Similarity=0.352 Sum_probs=46.2
Q ss_pred ceEEeCCCCChHHHHHHHHHHhcC-----CCeeeechh-hhH-----------HHHhhcchHHHHHHHHHHHhcCCeEEE
Q 007575 367 GVLLVGLPGTGKTLLAKAVAGEAE-----VPFISCSAS-EFV-----------ELYVGMGASRVRDLFARAKKEAPSIIF 429 (597)
Q Consensus 367 gVLL~GPPGTGKT~LArAIA~el~-----~pfi~is~s-ef~-----------~~~vG~~e~~vr~lF~~A~~~aP~ILf 429 (597)
.+|++||+|+|||+++++++++.. ..++.+.-+ ++. ...+|.......++++.+....|++|+
T Consensus 151 lilI~G~TGSGKTT~l~al~~~i~~~~~~~~IvtiEdp~E~~~~~~~~~~~~~q~evg~~~~~~~~~l~~aLR~~PD~I~ 230 (372)
T TIGR02525 151 LGLICGETGSGKSTLAASIYQHCGETYPDRKIVTYEDPIEYILGSPDDLLPPAQSQIGRDVDSFANGIRLALRRAPKIIG 230 (372)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEecCchhccCCCceeecccccccCCCccCHHHHHHHhhccCCCEEe
Confidence 589999999999999999988762 234443211 211 111232233456777888889999999
Q ss_pred EcCcc
Q 007575 430 IDEID 434 (597)
Q Consensus 430 IDEID 434 (597)
+.|+-
T Consensus 231 vGEiR 235 (372)
T TIGR02525 231 VGEIR 235 (372)
T ss_pred eCCCC
Confidence 99984
No 402
>cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru
Probab=96.83 E-value=0.0042 Score=61.23 Aligned_cols=22 Identities=23% Similarity=0.297 Sum_probs=20.0
Q ss_pred CceEEeCCCCChHHHHHHHHHH
Q 007575 366 RGVLLVGLPGTGKTLLAKAVAG 387 (597)
Q Consensus 366 ~gVLL~GPPGTGKT~LArAIA~ 387 (597)
.-++|+||.|+|||++.+.++.
T Consensus 30 ~~~~l~G~Ng~GKStll~~i~~ 51 (202)
T cd03243 30 RLLLITGPNMGGKSTYLRSIGL 51 (202)
T ss_pred eEEEEECCCCCccHHHHHHHHH
Confidence 4589999999999999999983
No 403
>PRK08233 hypothetical protein; Provisional
Probab=96.83 E-value=0.0035 Score=59.79 Aligned_cols=32 Identities=16% Similarity=0.274 Sum_probs=25.6
Q ss_pred CceEEeCCCCChHHHHHHHHHHhcC-CCeeeec
Q 007575 366 RGVLLVGLPGTGKTLLAKAVAGEAE-VPFISCS 397 (597)
Q Consensus 366 ~gVLL~GPPGTGKT~LArAIA~el~-~pfi~is 397 (597)
.-|.+.|+||+|||++|+.++..++ .+++..+
T Consensus 4 ~iI~I~G~~GsGKtTla~~L~~~l~~~~~~~~d 36 (182)
T PRK08233 4 KIITIAAVSGGGKTTLTERLTHKLKNSKALYFD 36 (182)
T ss_pred eEEEEECCCCCCHHHHHHHHHhhCCCCceEEEC
Confidence 3477889999999999999999985 4454444
No 404
>PF01745 IPT: Isopentenyl transferase; InterPro: IPR002648 Isopentenyl transferase / dimethylallyl transferase synthesizes isopentenyladensosine 5'-monophosphate, a cytokinin that induces shoot formation on host plants infected with the Ti plasmid [].; GO: 0004161 dimethylallyltranstransferase activity, 0009058 biosynthetic process; PDB: 2ZE8_C 2ZE5_A 2ZE7_A 2ZE6_A.
Probab=96.82 E-value=0.0014 Score=65.71 Aligned_cols=134 Identities=25% Similarity=0.297 Sum_probs=63.7
Q ss_pred ceEEeCCCCChHHHHHHHHHHhcCCCeeeechhhhHHH-HhhcchHHHHHHHHHHHhcCCeEEEEcCcchhhhhcCCccc
Q 007575 367 GVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFVEL-YVGMGASRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFR 445 (597)
Q Consensus 367 gVLL~GPPGTGKT~LArAIA~el~~pfi~is~sef~~~-~vG~~e~~vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~ 445 (597)
-++|+||+|||||.+|-++|++.|.|++..+.-..... .+|.+ +....-+ ...+ =+++||-..-
T Consensus 3 v~~i~GpT~tGKt~~ai~lA~~~g~pvI~~Driq~y~~l~v~Sg-rp~~~el----~~~~-RiyL~~r~l~--------- 67 (233)
T PF01745_consen 3 VYLIVGPTGTGKTALAIALAQKTGAPVISLDRIQCYPELSVGSG-RPTPSEL----KGTR-RIYLDDRPLS--------- 67 (233)
T ss_dssp EEEEE-STTSSHHHHHHHHHHHH--EEEEE-SGGG-GGGTTTTT----SGGG----TT-E-EEES----GG---------
T ss_pred EEEEECCCCCChhHHHHHHHHHhCCCEEEecceecccccccccC-CCCHHHH----cccc-eeeecccccc---------
Confidence 36899999999999999999999999999876544332 33322 2111111 1112 3788864321
Q ss_pred ccchhHHHHHHHHHHHHhcCCCCCCcEEEEEecCCCCCCChhhhC---CCCcce-EEEecCCCHHHHHHHHHHHHhc
Q 007575 446 IVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATNRSDVLDPALRR---PGRFDR-VVMVETPDKIGREAILKVHVSK 518 (597)
Q Consensus 446 ~~~~~e~eqtLnqLL~emdg~~~~~~VIVIaaTNrpd~LD~aLlR---pgRFd~-~I~v~~Pd~~eR~eILk~~l~~ 518 (597)
.+.-..++....|+..++......++|+=+-+.. .|..-..+ .-.|.. +..++.||.+....-.+...++
T Consensus 68 -~G~i~a~ea~~~Li~~v~~~~~~~~~IlEGGSIS--Ll~~m~~~~~w~~~f~w~i~rl~l~d~~~f~~ra~~Rv~~ 141 (233)
T PF01745_consen 68 -DGIINAEEAHERLISEVNSYSAHGGLILEGGSIS--LLNCMAQDPYWSLDFRWHIRRLRLPDEEVFMARAKRRVRQ 141 (233)
T ss_dssp -G-S--HHHHHHHHHHHHHTTTTSSEEEEEE--HH--HHHHHHH-TTTSSSSEEEEEE-----HHHHHHHHHHHHHH
T ss_pred -CCCcCHHHHHHHHHHHHHhccccCceEEeCchHH--HHHHHHhcccccCCCeEEEEEEECCChHHHHHHHHHHHHH
Confidence 1122334566777888888877555555444421 11111111 012332 4466778877766555555544
No 405
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.82 E-value=0.0047 Score=59.18 Aligned_cols=28 Identities=32% Similarity=0.451 Sum_probs=24.0
Q ss_pred CCCCCceEEeCCCCChHHHHHHHHHHhc
Q 007575 362 ARPPRGVLLVGLPGTGKTLLAKAVAGEA 389 (597)
Q Consensus 362 ~~~p~gVLL~GPPGTGKT~LArAIA~el 389 (597)
..+...+.|.||+|+|||+|.+.+++..
T Consensus 25 i~~G~~~~l~G~nGsGKstLl~~i~G~~ 52 (171)
T cd03228 25 IKPGEKVAIVGPSGSGKSTLLKLLLRLY 52 (171)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHHcCC
Confidence 3455678999999999999999999975
No 406
>PRK13808 adenylate kinase; Provisional
Probab=96.81 E-value=0.0059 Score=65.27 Aligned_cols=34 Identities=24% Similarity=0.475 Sum_probs=28.5
Q ss_pred eEEeCCCCChHHHHHHHHHHhcCCCeeeechhhhHH
Q 007575 368 VLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFVE 403 (597)
Q Consensus 368 VLL~GPPGTGKT~LArAIA~el~~pfi~is~sef~~ 403 (597)
|+|+||||+|||++++.|+..++++++++ .+++.
T Consensus 3 Iiv~GpPGSGK~T~a~~LA~~ygl~~is~--gdlLR 36 (333)
T PRK13808 3 LILLGPPGAGKGTQAQRLVQQYGIVQLST--GDMLR 36 (333)
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCceecc--cHHHH
Confidence 89999999999999999999998866654 45543
No 407
>PRK06547 hypothetical protein; Provisional
Probab=96.81 E-value=0.0012 Score=64.14 Aligned_cols=34 Identities=32% Similarity=0.380 Sum_probs=29.6
Q ss_pred CCCCceEEeCCCCChHHHHHHHHHHhcCCCeeee
Q 007575 363 RPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISC 396 (597)
Q Consensus 363 ~~p~gVLL~GPPGTGKT~LArAIA~el~~pfi~i 396 (597)
..+.-|++.|++|+|||++|+.+++.++++++++
T Consensus 13 ~~~~~i~i~G~~GsGKTt~a~~l~~~~~~~~~~~ 46 (172)
T PRK06547 13 GGMITVLIDGRSGSGKTTLAGALAARTGFQLVHL 46 (172)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHhCCCeecc
Confidence 4466789999999999999999999999887765
No 408
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=96.81 E-value=0.0029 Score=62.63 Aligned_cols=130 Identities=25% Similarity=0.379 Sum_probs=66.3
Q ss_pred CCceEEeCCCCChHHHHHHHHHHhc---CCCeeeechhhh-------HHHH---hhc----------chHHHHHHHHHHH
Q 007575 365 PRGVLLVGLPGTGKTLLAKAVAGEA---EVPFISCSASEF-------VELY---VGM----------GASRVRDLFARAK 421 (597)
Q Consensus 365 p~gVLL~GPPGTGKT~LArAIA~el---~~pfi~is~sef-------~~~~---vG~----------~e~~vr~lF~~A~ 421 (597)
|+-++|+||+|+|||+.+-.+|.++ +..+-.++++.+ ...| .+. ....+++.++.+.
T Consensus 1 p~vi~lvGptGvGKTTt~aKLAa~~~~~~~~v~lis~D~~R~ga~eQL~~~a~~l~vp~~~~~~~~~~~~~~~~~l~~~~ 80 (196)
T PF00448_consen 1 PKVIALVGPTGVGKTTTIAKLAARLKLKGKKVALISADTYRIGAVEQLKTYAEILGVPFYVARTESDPAEIAREALEKFR 80 (196)
T ss_dssp SEEEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEESTSSTHHHHHHHHHHHHHTEEEEESSTTSCHHHHHHHHHHHHH
T ss_pred CEEEEEECCCCCchHhHHHHHHHHHhhccccceeecCCCCCccHHHHHHHHHHHhccccchhhcchhhHHHHHHHHHHHh
Confidence 5678999999999998888887654 333333332211 1111 111 1223455666666
Q ss_pred hcCCeEEEEcCcchhhhhcCCcccccchhHHHHHHHHHHHHhcCCCCCCcEEEEEecCCCCCCChhhh--CCCCcceEEE
Q 007575 422 KEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATNRSDVLDPALR--RPGRFDRVVM 499 (597)
Q Consensus 422 ~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~eqtLnqLL~emdg~~~~~~VIVIaaTNrpd~LD~aLl--RpgRFd~~I~ 499 (597)
...-.+|+||-.... ..+.+..+-+..++..+ .+....+|+.++-..+.++.... +...++ .+-
T Consensus 81 ~~~~D~vlIDT~Gr~----------~~d~~~~~el~~~~~~~---~~~~~~LVlsa~~~~~~~~~~~~~~~~~~~~-~lI 146 (196)
T PF00448_consen 81 KKGYDLVLIDTAGRS----------PRDEELLEELKKLLEAL---NPDEVHLVLSATMGQEDLEQALAFYEAFGID-GLI 146 (196)
T ss_dssp HTTSSEEEEEE-SSS----------STHHHHHHHHHHHHHHH---SSSEEEEEEEGGGGGHHHHHHHHHHHHSSTC-EEE
T ss_pred hcCCCEEEEecCCcc----------hhhHHHHHHHHHHhhhc---CCccceEEEecccChHHHHHHHHHhhcccCc-eEE
Confidence 655569998875322 12223333444555555 33344566666666555553332 212344 344
Q ss_pred ecCCCHHHH
Q 007575 500 VETPDKIGR 508 (597)
Q Consensus 500 v~~Pd~~eR 508 (597)
+...|...+
T Consensus 147 lTKlDet~~ 155 (196)
T PF00448_consen 147 LTKLDETAR 155 (196)
T ss_dssp EESTTSSST
T ss_pred EEeecCCCC
Confidence 555554433
No 409
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.81 E-value=0.012 Score=64.76 Aligned_cols=113 Identities=20% Similarity=0.300 Sum_probs=60.5
Q ss_pred CCCceEEeCCCCChHHHHHHHHHHhc----CCCeeeechhhhHH-------HH---hhc---chHHHHHHHHHHHhcCCe
Q 007575 364 PPRGVLLVGLPGTGKTLLAKAVAGEA----EVPFISCSASEFVE-------LY---VGM---GASRVRDLFARAKKEAPS 426 (597)
Q Consensus 364 ~p~gVLL~GPPGTGKT~LArAIA~el----~~pfi~is~sef~~-------~~---vG~---~e~~vr~lF~~A~~~aP~ 426 (597)
.+.-++|.||+|+|||+++..+|.++ |..+..++++.+.. .| .|. ....+.++.+.+.....+
T Consensus 222 ~~~vi~lvGptGvGKTTtaaKLA~~~~~~~G~~V~Lit~Dt~R~aA~eQLk~yAe~lgvp~~~~~~~~~l~~~l~~~~~D 301 (432)
T PRK12724 222 QRKVVFFVGPTGSGKTTSIAKLAAKYFLHMGKSVSLYTTDNYRIAAIEQLKRYADTMGMPFYPVKDIKKFKETLARDGSE 301 (432)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEecccchhhhHHHHHHHHHHhcCCCeeehHHHHHHHHHHHhCCCC
Confidence 35568899999999999999998754 44444444443211 11 111 112234444445444567
Q ss_pred EEEEcCcchhhhhcCCcccccchhHHHHHHHHHHHHhcCC---CCCCcEEEEEecCCCCCCChhhh
Q 007575 427 IIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGF---DSNSAVIVLGATNRSDVLDPALR 489 (597)
Q Consensus 427 ILfIDEIDaL~~~r~~~~~~~~~~e~eqtLnqLL~emdg~---~~~~~VIVIaaTNrpd~LD~aLl 489 (597)
+|+||=..... .+ ...+..|...++.. .....++|+.+|...+.+...+.
T Consensus 302 ~VLIDTaGr~~----------rd---~~~l~eL~~~~~~~~~~~~~e~~LVLsAt~~~~~~~~~~~ 354 (432)
T PRK12724 302 LILIDTAGYSH----------RN---LEQLERMQSFYSCFGEKDSVENLLVLSSTSSYHHTLTVLK 354 (432)
T ss_pred EEEEeCCCCCc----------cC---HHHHHHHHHHHHhhcCCCCCeEEEEEeCCCCHHHHHHHHH
Confidence 88887532111 01 12233333333322 23345777777777766655543
No 410
>PRK14730 coaE dephospho-CoA kinase; Provisional
Probab=96.80 E-value=0.0091 Score=58.98 Aligned_cols=41 Identities=20% Similarity=0.328 Sum_probs=32.3
Q ss_pred ceEEeCCCCChHHHHHHHHHHhcCCCeeeechhhhHHHHhhcc
Q 007575 367 GVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFVELYVGMG 409 (597)
Q Consensus 367 gVLL~GPPGTGKT~LArAIA~el~~pfi~is~sef~~~~vG~~ 409 (597)
-|.|+|++|+|||++++.++..+|.+++ +++++.......+
T Consensus 3 ~i~itG~~gsGKst~~~~l~~~~g~~~i--~~D~~~~~~~~~~ 43 (195)
T PRK14730 3 RIGLTGGIASGKSTVGNYLAQQKGIPIL--DADIYAREALAPG 43 (195)
T ss_pred EEEEECCCCCCHHHHHHHHHHhhCCeEe--eCcHHHHHHHhcC
Confidence 3889999999999999999998898887 4566655444433
No 411
>PRK03731 aroL shikimate kinase II; Reviewed
Probab=96.79 E-value=0.0012 Score=62.95 Aligned_cols=32 Identities=31% Similarity=0.478 Sum_probs=28.7
Q ss_pred CceEEeCCCCChHHHHHHHHHHhcCCCeeeec
Q 007575 366 RGVLLVGLPGTGKTLLAKAVAGEAEVPFISCS 397 (597)
Q Consensus 366 ~gVLL~GPPGTGKT~LArAIA~el~~pfi~is 397 (597)
..++|+|++|+|||++++.+|.+++.||+..+
T Consensus 3 ~~i~~~G~~GsGKst~~~~la~~lg~~~~d~D 34 (171)
T PRK03731 3 QPLFLVGARGCGKTTVGMALAQALGYRFVDTD 34 (171)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhCCCEEEcc
Confidence 35899999999999999999999999998653
No 412
>COG3854 SpoIIIAA ncharacterized protein conserved in bacteria [Function unknown]
Probab=96.79 E-value=0.0028 Score=64.14 Aligned_cols=70 Identities=23% Similarity=0.361 Sum_probs=45.9
Q ss_pred CceEEeCCCCChHHHHHHHHHHhc--------CCCeeeech-hhhHHHHhhc-------------chHHHHHHHHHHHhc
Q 007575 366 RGVLLVGLPGTGKTLLAKAVAGEA--------EVPFISCSA-SEFVELYVGM-------------GASRVRDLFARAKKE 423 (597)
Q Consensus 366 ~gVLL~GPPGTGKT~LArAIA~el--------~~pfi~is~-sef~~~~vG~-------------~e~~vr~lF~~A~~~ 423 (597)
.+.|+.||||||||++.|-+|.-+ +..+..++- +++.....|. ..-+-..++...+.+
T Consensus 138 lntLiigpP~~GKTTlLRdiaR~~s~g~~~~l~kkv~IiDersEIag~~~gvpq~~~g~R~dVld~cpk~~gmmmaIrsm 217 (308)
T COG3854 138 LNTLIIGPPQVGKTTLLRDIARLLSDGINQFLPKKVGIIDERSEIAGCLNGVPQHGRGRRMDVLDPCPKAEGMMMAIRSM 217 (308)
T ss_pred eeeEEecCCCCChHHHHHHHHHHhhccccccCCceEEEEeccchhhccccCCchhhhhhhhhhcccchHHHHHHHHHHhc
Confidence 368999999999999999998754 233333332 2332222222 112234566777889
Q ss_pred CCeEEEEcCcch
Q 007575 424 APSIIFIDEIDA 435 (597)
Q Consensus 424 aP~ILfIDEIDa 435 (597)
+|.|+++|||..
T Consensus 218 ~PEViIvDEIGt 229 (308)
T COG3854 218 SPEVIIVDEIGT 229 (308)
T ss_pred CCcEEEEecccc
Confidence 999999999954
No 413
>PHA02530 pseT polynucleotide kinase; Provisional
Probab=96.79 E-value=0.0034 Score=65.35 Aligned_cols=39 Identities=23% Similarity=0.438 Sum_probs=29.5
Q ss_pred CCceEEeCCCCChHHHHHHHHHHhcCCCeeeechhhhHHH
Q 007575 365 PRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFVEL 404 (597)
Q Consensus 365 p~gVLL~GPPGTGKT~LArAIA~el~~pfi~is~sef~~~ 404 (597)
+.-++|.|+||+|||++|+.++.++. .++.++..++...
T Consensus 2 ~~liil~G~pGSGKSTla~~L~~~~~-~~~~l~~D~~r~~ 40 (300)
T PHA02530 2 MKIILTVGVPGSGKSTWAREFAAKNP-KAVNVNRDDLRQS 40 (300)
T ss_pred cEEEEEEcCCCCCHHHHHHHHHHHCC-CCEEEeccHHHHH
Confidence 34588999999999999999999983 3445555555444
No 414
>smart00487 DEXDc DEAD-like helicases superfamily.
Probab=96.78 E-value=0.011 Score=55.56 Aligned_cols=23 Identities=35% Similarity=0.460 Sum_probs=17.9
Q ss_pred CceEEeCCCCChHHH-HHHHHHHh
Q 007575 366 RGVLLVGLPGTGKTL-LAKAVAGE 388 (597)
Q Consensus 366 ~gVLL~GPPGTGKT~-LArAIA~e 388 (597)
+.+++.||+|+|||. ++..+...
T Consensus 25 ~~~~i~~~~GsGKT~~~~~~~~~~ 48 (201)
T smart00487 25 RDVILAAPTGSGKTLAALLPALEA 48 (201)
T ss_pred CcEEEECCCCCchhHHHHHHHHHH
Confidence 479999999999999 55555443
No 415
>PRK05057 aroK shikimate kinase I; Reviewed
Probab=96.78 E-value=0.0013 Score=63.56 Aligned_cols=34 Identities=26% Similarity=0.538 Sum_probs=30.4
Q ss_pred CCceEEeCCCCChHHHHHHHHHHhcCCCeeeech
Q 007575 365 PRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSA 398 (597)
Q Consensus 365 p~gVLL~GPPGTGKT~LArAIA~el~~pfi~is~ 398 (597)
+..|+|.||+|+|||++++.+|+.++.+|+..+.
T Consensus 4 ~~~I~liG~~GaGKStl~~~La~~l~~~~vd~D~ 37 (172)
T PRK05057 4 KRNIFLVGPMGAGKSTIGRQLAQQLNMEFYDSDQ 37 (172)
T ss_pred CCEEEEECCCCcCHHHHHHHHHHHcCCcEEECCc
Confidence 4569999999999999999999999999887653
No 416
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=96.77 E-value=0.032 Score=61.72 Aligned_cols=197 Identities=20% Similarity=0.290 Sum_probs=97.3
Q ss_pred CCCCceEEeCCCCChHHHHHHHHHHhc----CCCeeeechhhhHH-------HH---h-------h--cc-hHHHHHHHH
Q 007575 363 RPPRGVLLVGLPGTGKTLLAKAVAGEA----EVPFISCSASEFVE-------LY---V-------G--MG-ASRVRDLFA 418 (597)
Q Consensus 363 ~~p~gVLL~GPPGTGKT~LArAIA~el----~~pfi~is~sef~~-------~~---v-------G--~~-e~~vr~lF~ 418 (597)
..|.-++++|++|+|||+++..+|..+ |..+..++++.+.. .+ . + .. .....+.++
T Consensus 97 ~~p~vi~~vG~~GsGKTTtaakLA~~l~~~~g~kV~lV~~D~~R~~a~~QL~~~a~~~gvp~~~~~~~~~P~~i~~~al~ 176 (428)
T TIGR00959 97 KPPTVILMVGLQGSGKTTTCGKLAYYLKKKQGKKVLLVACDLYRPAAIEQLKVLGQQVGVPVFALGKGQSPVEIARRALE 176 (428)
T ss_pred CCCEEEEEECCCCCcHHHHHHHHHHHHHHhCCCeEEEEeccccchHHHHHHHHHHHhcCCceEecCCCCCHHHHHHHHHH
Confidence 457789999999999999988777653 55666666653311 11 0 0 11 123355666
Q ss_pred HHHhcCCeEEEEcCcchhhhhcCCcccccchhHHHHHHHHHHHHhcCCCCCCcEEEEEecCCCCCCChh--hhCCCCcce
Q 007575 419 RAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATNRSDVLDPA--LRRPGRFDR 496 (597)
Q Consensus 419 ~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~eqtLnqLL~emdg~~~~~~VIVIaaTNrpd~LD~a--LlRpgRFd~ 496 (597)
.+......+|+||=.-.+. .++..-..+.++...+ .+..-++|+-++...+.++.+ +...-.++
T Consensus 177 ~~~~~~~DvVIIDTaGr~~----------~d~~l~~eL~~i~~~~---~p~e~lLVvda~tgq~~~~~a~~f~~~v~i~- 242 (428)
T TIGR00959 177 YAKENGFDVVIVDTAGRLQ----------IDEELMEELAAIKEIL---NPDEILLVVDAMTGQDAVNTAKTFNERLGLT- 242 (428)
T ss_pred HHHhcCCCEEEEeCCCccc----------cCHHHHHHHHHHHHhh---CCceEEEEEeccchHHHHHHHHHHHhhCCCC-
Confidence 6666667789988764332 1122222223333222 223334444444322222211 12111233
Q ss_pred EEEecCCCHHHHHHHHHHHHhcCCCCC-----------CCCCCHHHHHHhCCCCCHHHHHHHHHHHHHH---------HH
Q 007575 497 VVMVETPDKIGREAILKVHVSKKELPL-----------AKDIDLGDIASMTTGFTGADLANLVNEAALL---------AG 556 (597)
Q Consensus 497 ~I~v~~Pd~~eR~eILk~~l~~~~~~l-----------~~dvdl~~LA~~t~G~SgaDL~~Lv~eAal~---------A~ 556 (597)
-+.+...|...+...+.......+.|+ -...+.+.++.+.-|. +|+..|+..|... +.
T Consensus 243 giIlTKlD~~~~~G~~lsi~~~~~~PI~fi~~Ge~i~dl~~f~p~~~~~~iLg~--gD~~~l~e~~~~~~~~~~~~~~~~ 320 (428)
T TIGR00959 243 GVVLTKLDGDARGGAALSVRSVTGKPIKFIGVGEKIDDLEPFHPERMASRILGM--GDILSLVEKAQEVVDEEEAKKLAE 320 (428)
T ss_pred EEEEeCccCcccccHHHHHHHHHCcCEEEEeCCCChhhCccCCHHHHHHHHhCC--CChHHHHHHHHHhhCHHHHHHHHH
Confidence 233445554444333222222212221 1223456777766553 5777777755432 11
Q ss_pred hcCCCcccHHHHHHHHHHH
Q 007575 557 RLNKVVVEKIDFIHAVERS 575 (597)
Q Consensus 557 r~~~~~It~~d~~~Al~~v 575 (597)
+-.+...+.+||.+-++.+
T Consensus 321 ~~~~~~f~l~d~~~q~~~~ 339 (428)
T TIGR00959 321 KMKKGQFDLEDFLEQLRQI 339 (428)
T ss_pred HHHhCCCCHHHHHHHHHHH
Confidence 1123457888887776655
No 417
>cd03280 ABC_MutS2 MutS2 homologs in bacteria and eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, a
Probab=96.77 E-value=0.0077 Score=59.35 Aligned_cols=20 Identities=25% Similarity=0.395 Sum_probs=19.1
Q ss_pred ceEEeCCCCChHHHHHHHHH
Q 007575 367 GVLLVGLPGTGKTLLAKAVA 386 (597)
Q Consensus 367 gVLL~GPPGTGKT~LArAIA 386 (597)
.++|+||.|+|||+|.+.++
T Consensus 30 ~~~ltG~Ng~GKStll~~i~ 49 (200)
T cd03280 30 VLVITGPNAGGKTVTLKTLG 49 (200)
T ss_pred EEEEECCCCCChHHHHHHHH
Confidence 59999999999999999998
No 418
>cd03227 ABC_Class2 ABC-type Class 2 contains systems involved in cellular processes other than transport. These families are characterised by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins.
Probab=96.77 E-value=0.009 Score=56.94 Aligned_cols=22 Identities=23% Similarity=0.440 Sum_probs=19.6
Q ss_pred CCceEEeCCCCChHHHHHHHHH
Q 007575 365 PRGVLLVGLPGTGKTLLAKAVA 386 (597)
Q Consensus 365 p~gVLL~GPPGTGKT~LArAIA 386 (597)
++..+++||.|+|||.+.++++
T Consensus 21 ~~~~~i~G~NgsGKS~~l~~i~ 42 (162)
T cd03227 21 GSLTIITGPNGSGKSTILDAIG 42 (162)
T ss_pred CCEEEEECCCCCCHHHHHHHHH
Confidence 3578999999999999999984
No 419
>PRK14528 adenylate kinase; Provisional
Probab=96.76 E-value=0.0012 Score=64.51 Aligned_cols=31 Identities=32% Similarity=0.613 Sum_probs=27.8
Q ss_pred CceEEeCCCCChHHHHHHHHHHhcCCCeeee
Q 007575 366 RGVLLVGLPGTGKTLLAKAVAGEAEVPFISC 396 (597)
Q Consensus 366 ~gVLL~GPPGTGKT~LArAIA~el~~pfi~i 396 (597)
+.+++.||||+|||++|+.++..++.+++++
T Consensus 2 ~~i~i~G~pGsGKtt~a~~la~~~~~~~is~ 32 (186)
T PRK14528 2 KNIIFMGPPGAGKGTQAKILCERLSIPQIST 32 (186)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCCeeeC
Confidence 3589999999999999999999999887764
No 420
>PTZ00035 Rad51 protein; Provisional
Probab=96.76 E-value=0.0052 Score=65.91 Aligned_cols=116 Identities=18% Similarity=0.208 Sum_probs=64.2
Q ss_pred CCCCCCceEEeCCCCChHHHHHHHHHHhcC---------CCeeeechhh------hHHHH--hhcc--------------
Q 007575 361 GARPPRGVLLVGLPGTGKTLLAKAVAGEAE---------VPFISCSASE------FVELY--VGMG-------------- 409 (597)
Q Consensus 361 g~~~p~gVLL~GPPGTGKT~LArAIA~el~---------~pfi~is~se------f~~~~--vG~~-------------- 409 (597)
|.....-+.|+||||+|||+|+..++.... -..++++... +.... .+..
T Consensus 114 Gi~~G~iteI~G~~GsGKT~l~~~l~~~~qlp~~~gg~~g~vvyIdtE~~f~~eri~~ia~~~g~~~~~~l~nI~~~~~~ 193 (337)
T PTZ00035 114 GIETGSITELFGEFRTGKTQLCHTLCVTCQLPIEQGGGEGKVLYIDTEGTFRPERIVQIAERFGLDPEDVLDNIAYARAY 193 (337)
T ss_pred CCCCCeEEEEECCCCCchhHHHHHHHHHhccccccCCCCceEEEEEccCCCCHHHHHHHHHHhCCChHhHhhceEEEccC
Confidence 555666688999999999999999875432 2344544332 11110 0000
Q ss_pred --h---HHHHHHHHHHHhcCCeEEEEcCcchhhhhcCCcccccchhHHHHHHHHHHHHhcCCCCCCcEEEEEec
Q 007575 410 --A---SRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGAT 478 (597)
Q Consensus 410 --e---~~vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~eqtLnqLL~emdg~~~~~~VIVIaaT 478 (597)
+ ..+..+........+.+|+||-|-++.+..-.+ .+...++.+.+.+++..|..+....++.|+.+.
T Consensus 194 ~~e~~~~~l~~~~~~l~~~~~~lvVIDSital~r~~~~~--~~~~~~r~~~l~~~~~~L~~la~~~~vavvvtN 265 (337)
T PTZ00035 194 NHEHQMQLLSQAAAKMAEERFALLIVDSATALFRVDYSG--RGELAERQQHLGKFLRALQKLADEFNVAVVITN 265 (337)
T ss_pred CHHHHHHHHHHHHHHhhccCccEEEEECcHHhhhhhccC--cccHHHHHHHHHHHHHHHHHHHHHcCcEEEEec
Confidence 0 111122222234567899999999987542111 112334556667777666554444556666443
No 421
>PF06414 Zeta_toxin: Zeta toxin; InterPro: IPR010488 This entry represents a domain originally identified in bacterial zeta toxin proteins, where it comprises the whole protein []. It has subsequently been found in a number of other proteins, such as polynucleotide kinase and 2',3'-cyclic-nucleotide 3'-phosphodiesterase. It appears to function as a kinase domain [, ].; GO: 0005524 ATP binding, 0016301 kinase activity; PDB: 2P5T_H 1GVN_B 3Q8X_D.
Probab=96.76 E-value=0.0032 Score=61.94 Aligned_cols=42 Identities=29% Similarity=0.511 Sum_probs=32.9
Q ss_pred CCCCceEEeCCCCChHHHHHHHHHHhc-CCCeeeechhhhHHH
Q 007575 363 RPPRGVLLVGLPGTGKTLLAKAVAGEA-EVPFISCSASEFVEL 404 (597)
Q Consensus 363 ~~p~gVLL~GPPGTGKT~LArAIA~el-~~pfi~is~sef~~~ 404 (597)
..|.-+++.|+||+|||+++..+..++ +..++.++.+++...
T Consensus 13 ~~P~~~i~aG~~GsGKSt~~~~~~~~~~~~~~v~i~~D~~r~~ 55 (199)
T PF06414_consen 13 EKPTLIIIAGQPGSGKSTLARQLLEEFGGGGIVVIDADEFRQF 55 (199)
T ss_dssp SS-EEEEEES-TTSTTHHHHHHHHHHT-TT-SEEE-GGGGGGG
T ss_pred cCCEEEEEeCCCCCCHHHHHHHhhhhccCCCeEEEehHHHHHh
Confidence 467889999999999999999999988 788888998887544
No 422
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=96.75 E-value=0.0076 Score=61.64 Aligned_cols=24 Identities=33% Similarity=0.484 Sum_probs=21.0
Q ss_pred CCceEEeCCCCChHHHHHHHHHHh
Q 007575 365 PRGVLLVGLPGTGKTLLAKAVAGE 388 (597)
Q Consensus 365 p~gVLL~GPPGTGKT~LArAIA~e 388 (597)
.--|-|.||+|||||||.+.||+-
T Consensus 29 GEfvsilGpSGcGKSTLLriiAGL 52 (248)
T COG1116 29 GEFVAILGPSGCGKSTLLRLIAGL 52 (248)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 334889999999999999999984
No 423
>PF13521 AAA_28: AAA domain; PDB: 1LW7_A.
Probab=96.75 E-value=0.0023 Score=60.66 Aligned_cols=35 Identities=37% Similarity=0.583 Sum_probs=24.9
Q ss_pred eEEeCCCCChHHHHHHHHHHhcCCCeeeechhhhHH
Q 007575 368 VLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFVE 403 (597)
Q Consensus 368 VLL~GPPGTGKT~LArAIA~el~~pfi~is~sef~~ 403 (597)
|.|+|+||||||+|+++++.. |.+++.-.+.++..
T Consensus 2 I~i~G~~stGKTTL~~~L~~~-g~~~v~E~ar~~~~ 36 (163)
T PF13521_consen 2 IVITGGPSTGKTTLIEALAAR-GYPVVPEYAREIIE 36 (163)
T ss_dssp EEEE--TTSHHHHHHHHHHHH-T-EEE--TTHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHc-CCeEEeecHHHHHH
Confidence 789999999999999999998 88877554445443
No 424
>PRK14529 adenylate kinase; Provisional
Probab=96.72 E-value=0.0052 Score=62.21 Aligned_cols=35 Identities=20% Similarity=0.367 Sum_probs=28.8
Q ss_pred ceEEeCCCCChHHHHHHHHHHhcCCCeeeechhhhHH
Q 007575 367 GVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFVE 403 (597)
Q Consensus 367 gVLL~GPPGTGKT~LArAIA~el~~pfi~is~sef~~ 403 (597)
.|+|.||||+|||++++.++..++.++++. .+++.
T Consensus 2 ~I~l~G~PGsGK~T~a~~La~~~~~~~is~--gdllr 36 (223)
T PRK14529 2 NILIFGPNGSGKGTQGALVKKKYDLAHIES--GAIFR 36 (223)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHCCCCccc--chhhh
Confidence 389999999999999999999999887643 44443
No 425
>PF08423 Rad51: Rad51; InterPro: IPR013632 This domain is found at the C terminus of the DNA repair and recombination protein Rad51. It is critical for DNA binding []. Rad51 is a homologue of the bacterial RecA protein. Rad51 and RecA share a core ATPase domain.; PDB: 2ZUC_A 2Z43_C 2ZUD_B 2DFL_A 2ZUB_A 2BKE_A 2KZ3_A 2CVH_B 2CVF_B 1SZP_D ....
Probab=96.71 E-value=0.003 Score=65.07 Aligned_cols=116 Identities=19% Similarity=0.184 Sum_probs=64.7
Q ss_pred eEEeCCCCChHHHHHHHHHHhcC---------CCeeeechhh---------hHHHHhhcch------------------H
Q 007575 368 VLLVGLPGTGKTLLAKAVAGEAE---------VPFISCSASE---------FVELYVGMGA------------------S 411 (597)
Q Consensus 368 VLL~GPPGTGKT~LArAIA~el~---------~pfi~is~se---------f~~~~vG~~e------------------~ 411 (597)
.=|+||||+|||.|+-.+|-... ...++++... +.+.+....+ .
T Consensus 41 tEi~G~~gsGKTql~l~l~~~~~l~~~~~g~~~~vvyidTe~~f~~~Rl~~i~~~~~~~~~~~l~~I~v~~~~~~~~l~~ 120 (256)
T PF08423_consen 41 TEIVGESGSGKTQLCLQLAVNVQLPEEIGGLGGKVVYIDTEGTFSPERLQQIAERFGLDPEEILDNIFVIRVFDLEELLE 120 (256)
T ss_dssp EEEEESTTSSHHHHHHHHHHHTTSGGCTTSSSSEEEEEESSSSS-HHHHHHHHHHTTS-HHHHHHTEEEEE-SSHHHHHH
T ss_pred EEEEEecccccchHHHHHHHHhhcccccccCCCceEEEeCCCCCCHHHHHHHhhccccccchhhhceeeeecCCHHHHHH
Confidence 33999999999999998875432 2355554331 1111100000 1
Q ss_pred HHHHHHHHHHhcCCeEEEEcCcchhhhhcCCcccccchhHHHHHHHHHHHHhcCCCCCCcEEEEEecCCCCCCC
Q 007575 412 RVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATNRSDVLD 485 (597)
Q Consensus 412 ~vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~eqtLnqLL~emdg~~~~~~VIVIaaTNrpd~LD 485 (597)
.+..+-.........+|+||-|-++.+..-.+ .+...++.+.+..++..|..+....++.||.+.+-...++
T Consensus 121 ~L~~l~~~l~~~~ikLIVIDSIaalfr~e~~~--~~~~~~R~~~L~~~~~~L~~lA~~~~iaVvvTNqv~~~~~ 192 (256)
T PF08423_consen 121 LLEQLPKLLSESKIKLIVIDSIAALFRSEFSG--RGDLAERQRMLARLARILKRLARKYNIAVVVTNQVTTKID 192 (256)
T ss_dssp HHHHHHHHHHHSCEEEEEEETSSHHHHHHSGS--TTTHHHHHHHHHHHHHHHHHHHHHTT-EEEEEEEECSSTT
T ss_pred HHHHHHhhccccceEEEEecchHHHHHHHHcc--chhhHHHHHHHHHHHHHHHHHHHhCCceEEeeceeeecCC
Confidence 11222222234456799999999998754211 1233466777777777776655556666665554444444
No 426
>PRK02496 adk adenylate kinase; Provisional
Probab=96.71 E-value=0.0013 Score=63.58 Aligned_cols=30 Identities=33% Similarity=0.583 Sum_probs=26.9
Q ss_pred ceEEeCCCCChHHHHHHHHHHhcCCCeeee
Q 007575 367 GVLLVGLPGTGKTLLAKAVAGEAEVPFISC 396 (597)
Q Consensus 367 gVLL~GPPGTGKT~LArAIA~el~~pfi~i 396 (597)
-++|.||||+|||++|+.+|..++.+.+++
T Consensus 3 ~i~i~G~pGsGKst~a~~la~~~~~~~i~~ 32 (184)
T PRK02496 3 RLIFLGPPGAGKGTQAVVLAEHLHIPHIST 32 (184)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEEEh
Confidence 489999999999999999999999877654
No 427
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=96.70 E-value=0.014 Score=62.10 Aligned_cols=37 Identities=24% Similarity=0.354 Sum_probs=28.0
Q ss_pred CCCCceEEeCCCCChHHHHHHHHHHhc---CCCeeeechh
Q 007575 363 RPPRGVLLVGLPGTGKTLLAKAVAGEA---EVPFISCSAS 399 (597)
Q Consensus 363 ~~p~gVLL~GPPGTGKT~LArAIA~el---~~pfi~is~s 399 (597)
..|.-++|+||+|+|||+++..+|..+ +..+..++++
T Consensus 112 ~~~~vi~lvGpnGsGKTTt~~kLA~~l~~~g~~V~Li~~D 151 (318)
T PRK10416 112 KKPFVILVVGVNGVGKTTTIGKLAHKYKAQGKKVLLAAGD 151 (318)
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHHHhcCCeEEEEecC
Confidence 456778999999999999999999865 4444444443
No 428
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=96.70 E-value=0.0075 Score=57.63 Aligned_cols=32 Identities=38% Similarity=0.422 Sum_probs=26.2
Q ss_pred eEEeCCCCChHHHHHHHHHHhc---CCCeeeechh
Q 007575 368 VLLVGLPGTGKTLLAKAVAGEA---EVPFISCSAS 399 (597)
Q Consensus 368 VLL~GPPGTGKT~LArAIA~el---~~pfi~is~s 399 (597)
++++||||+|||+++..+|..+ +..+..++++
T Consensus 3 ~~~~G~~G~GKTt~~~~la~~~~~~g~~v~~i~~D 37 (173)
T cd03115 3 ILLVGLQGVGKTTTAAKLALYLKKKGKKVLLVAAD 37 (173)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEEcC
Confidence 6899999999999999998764 5666666655
No 429
>PF09848 DUF2075: Uncharacterized conserved protein (DUF2075); InterPro: IPR018647 This domain, found in putative ATP/GTP binding proteins, has no known function. It is found in some proteins described as Schlafen family members, which may have a role in hematopoeitic cell differentiation [].
Probab=96.69 E-value=0.0042 Score=66.65 Aligned_cols=23 Identities=48% Similarity=0.606 Sum_probs=21.2
Q ss_pred ceEEeCCCCChHHHHHHHHHHhc
Q 007575 367 GVLLVGLPGTGKTLLAKAVAGEA 389 (597)
Q Consensus 367 gVLL~GPPGTGKT~LArAIA~el 389 (597)
-+++.|.||||||.||-.++.++
T Consensus 3 v~~I~G~aGTGKTvla~~l~~~l 25 (352)
T PF09848_consen 3 VILITGGAGTGKTVLALNLAKEL 25 (352)
T ss_pred EEEEEecCCcCHHHHHHHHHHHh
Confidence 47899999999999999999987
No 430
>PRK13695 putative NTPase; Provisional
Probab=96.69 E-value=0.01 Score=56.98 Aligned_cols=23 Identities=35% Similarity=0.468 Sum_probs=20.5
Q ss_pred ceEEeCCCCChHHHHHHHHHHhc
Q 007575 367 GVLLVGLPGTGKTLLAKAVAGEA 389 (597)
Q Consensus 367 gVLL~GPPGTGKT~LArAIA~el 389 (597)
.++|+|++|+|||+|++.+++++
T Consensus 2 ~i~ltG~~G~GKTTll~~i~~~l 24 (174)
T PRK13695 2 KIGITGPPGVGKTTLVLKIAELL 24 (174)
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 37899999999999999988764
No 431
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=96.69 E-value=0.011 Score=65.48 Aligned_cols=36 Identities=25% Similarity=0.196 Sum_probs=26.8
Q ss_pred CCceEEeCCCCChHHHHHHHHHHhc-----CCCeeeechhh
Q 007575 365 PRGVLLVGLPGTGKTLLAKAVAGEA-----EVPFISCSASE 400 (597)
Q Consensus 365 p~gVLL~GPPGTGKT~LArAIA~el-----~~pfi~is~se 400 (597)
++.++|+||+|+|||+++..+|..+ +..+..++++.
T Consensus 221 ~~~i~~vGptGvGKTTt~~kLA~~~~~~~~g~~V~li~~D~ 261 (424)
T PRK05703 221 GGVVALVGPTGVGKTTTLAKLAARYALLYGKKKVALITLDT 261 (424)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEECCc
Confidence 4578999999999999888887643 34555555554
No 432
>PLN03186 DNA repair protein RAD51 homolog; Provisional
Probab=96.69 E-value=0.0047 Score=66.37 Aligned_cols=118 Identities=14% Similarity=0.189 Sum_probs=66.8
Q ss_pred CCCCCCceEEeCCCCChHHHHHHHHHHhc---------CCCeeeechhh------hHHHH--hhcc--------------
Q 007575 361 GARPPRGVLLVGLPGTGKTLLAKAVAGEA---------EVPFISCSASE------FVELY--VGMG-------------- 409 (597)
Q Consensus 361 g~~~p~gVLL~GPPGTGKT~LArAIA~el---------~~pfi~is~se------f~~~~--vG~~-------------- 409 (597)
|.....-++++|+||+|||.|+..+|-.+ +.+.++++..+ +.... .+..
T Consensus 119 G~~~g~i~~i~G~~g~GKT~l~~~l~~~~~~~~~~gg~~g~vlyIdtE~~f~~eRl~qia~~~~~~~~~~l~~i~~~~~~ 198 (342)
T PLN03186 119 GIETGSITEIYGEFRTGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDTEGTFRPQRLIQIAERFGLNGADVLENVAYARAY 198 (342)
T ss_pred CCcCceEEEEECCCCCCccHHHHHHHHHhhcchhhCCCCceEEEEECCCCccHHHHHHHHHHcCCChhhhccceEEEecC
Confidence 45555668899999999999999877432 12566665543 11110 0100
Q ss_pred -hHHHHHHH----HHHHhcCCeEEEEcCcchhhhhcCCcccccchhHHHHHHHHHHHHhcCCCCCCcEEEEEecCC
Q 007575 410 -ASRVRDLF----ARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATNR 480 (597)
Q Consensus 410 -e~~vr~lF----~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~eqtLnqLL~emdg~~~~~~VIVIaaTNr 480 (597)
...+..++ .......+.+|+||-|-++....-.+ .+...++.+.+.+++..|..+....++.||.+..-
T Consensus 199 ~~e~~~~ll~~~~~~~~~~~~~LIVIDSI~alfr~~~~~--~g~l~~r~~~L~~~l~~L~~lA~~~~vaVviTNqv 272 (342)
T PLN03186 199 NTDHQSELLLEAASMMAETRFALMIVDSATALYRTEFSG--RGELSARQMHLGKFLRSLQRLADEFGVAVVITNQV 272 (342)
T ss_pred CHHHHHHHHHHHHHHhhccCCCEEEEeCcHHHHHHHhcC--CccHHHHHHHHHHHHHHHHHHHHHcCCEEEEEcCE
Confidence 01111122 22344568899999999987642111 11223445567777777665555556666655433
No 433
>TIGR01351 adk adenylate kinases. Adenylate kinase (EC 2.7.4.3) converts ATP + AMP to ADP + ADP, that is, uses ATP as a phosphate donor for AMP. Most members of this family are known or believed to be adenylate kinase. However, some members accept other nucleotide triphosphates as donors, may be unable to use ATP, and may fail to complement adenylate kinase mutants. An example of a nucleoside-triphosphate--adenylate kinase (EC 2.7.4.10) is a GTP:AMP phosphotransferase. This family is designated subfamily rather than equivalog for this reason.
Probab=96.69 E-value=0.0014 Score=65.05 Aligned_cols=34 Identities=35% Similarity=0.642 Sum_probs=28.5
Q ss_pred eEEeCCCCChHHHHHHHHHHhcCCCeeeechhhhHH
Q 007575 368 VLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFVE 403 (597)
Q Consensus 368 VLL~GPPGTGKT~LArAIA~el~~pfi~is~sef~~ 403 (597)
|+|.||||+|||++|+.+|..++++.+++ .+++.
T Consensus 2 I~i~G~pGsGKsT~a~~La~~~g~~~is~--gdllr 35 (210)
T TIGR01351 2 LVLLGPPGSGKGTQAKRIAEKYGLPHIST--GDLLR 35 (210)
T ss_pred EEEECCCCCCHHHHHHHHHHHcCCCeeeh--hHHHH
Confidence 79999999999999999999998877654 44443
No 434
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=96.68 E-value=0.0015 Score=62.77 Aligned_cols=34 Identities=21% Similarity=0.442 Sum_probs=27.6
Q ss_pred ceEEeCCCCChHHHHHHHHHHhcCCCeeeechhhhH
Q 007575 367 GVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFV 402 (597)
Q Consensus 367 gVLL~GPPGTGKT~LArAIA~el~~pfi~is~sef~ 402 (597)
-++|.||||+|||++++.++.++|.+.+ +..++.
T Consensus 5 ii~i~G~~GsGKsTl~~~l~~~~g~~~~--~~g~~~ 38 (188)
T TIGR01360 5 IIFIVGGPGSGKGTQCEKIVEKYGFTHL--STGDLL 38 (188)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEE--eHHHHH
Confidence 4789999999999999999999886655 444443
No 435
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=96.67 E-value=0.012 Score=66.05 Aligned_cols=39 Identities=28% Similarity=0.330 Sum_probs=30.3
Q ss_pred CCCCCCceEEeCCCCChHHHHHHHHHHh----cCCCeeeechh
Q 007575 361 GARPPRGVLLVGLPGTGKTLLAKAVAGE----AEVPFISCSAS 399 (597)
Q Consensus 361 g~~~p~gVLL~GPPGTGKT~LArAIA~e----l~~pfi~is~s 399 (597)
|.++...+||+||||||||+||..++.+ .|-+.++++..
T Consensus 17 Glp~g~~~Li~G~pGsGKT~la~qfl~~g~~~~ge~~lyvs~e 59 (484)
T TIGR02655 17 GLPIGRSTLVSGTSGTGKTLFSIQFLYNGIIHFDEPGVFVTFE 59 (484)
T ss_pred CCCCCeEEEEEcCCCCCHHHHHHHHHHHHHHhCCCCEEEEEEe
Confidence 5677788999999999999999988543 25676666543
No 436
>TIGR00152 dephospho-CoA kinase. This model produces scores in the range of 0-25 bits against adenylate, guanylate, uridine, and thymidylate kinases.
Probab=96.66 E-value=0.011 Score=57.48 Aligned_cols=41 Identities=29% Similarity=0.416 Sum_probs=31.4
Q ss_pred eEEeCCCCChHHHHHHHHHHhcCCCeeeechhhhHHHHhhcch
Q 007575 368 VLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFVELYVGMGA 410 (597)
Q Consensus 368 VLL~GPPGTGKT~LArAIA~el~~pfi~is~sef~~~~vG~~e 410 (597)
|.|+|.+|+|||++++.++...+.+++ +++++.......+.
T Consensus 2 i~itG~~gsGKst~~~~l~~~~~~~~i--~~D~~~~~~~~~~~ 42 (188)
T TIGR00152 2 IGLTGGIGSGKSTVANYLADKYHFPVI--DADKIAHQVVEKGS 42 (188)
T ss_pred EEEECCCCCCHHHHHHHHHHhcCCeEE--eCCHHHHHHHhcCC
Confidence 689999999999999999998767765 45666555444444
No 437
>TIGR01526 nadR_NMN_Atrans nicotinamide-nucleotide adenylyltransferase, NadR type. E. coli NadR has also been found to regulate the import of its substrate, nicotinamide ribonucleotide, but it is not known if the other members of this model share that activity.
Probab=96.64 E-value=0.0045 Score=65.98 Aligned_cols=70 Identities=27% Similarity=0.284 Sum_probs=46.7
Q ss_pred CceEEeCCCCChHHHHHHHHHHhcCCCeeeechhhhHHHHhhcch-----H---HHH---HHHHHHHhcCCeEEEEcCcc
Q 007575 366 RGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFVELYVGMGA-----S---RVR---DLFARAKKEAPSIIFIDEID 434 (597)
Q Consensus 366 ~gVLL~GPPGTGKT~LArAIA~el~~pfi~is~sef~~~~vG~~e-----~---~vr---~lF~~A~~~aP~ILfIDEID 434 (597)
+.+.|.|+||+|||+|+++++..++.+++.-.+.++.....+... . .+. .....+...+..|||+|- +
T Consensus 163 ~~~~~~G~~~~gkstl~~~l~~~~~~~~v~E~~R~~~~~~~~~~~~l~~~d~~~i~~g~~~~~~~~~~~a~~iif~D~-~ 241 (325)
T TIGR01526 163 KTVAILGGESTGKSTLVNKLAAVFNTTSAWEYAREYVEEKLGGDEALQYSDYAQIALGQQRYIDYAVRHAHKIAFIDT-D 241 (325)
T ss_pred cEEEEECCCCCCHHHHHHHHHHhhCCCEEeehhHHHHHHhcCCCcccCHHHHHHHHHHHHHHHHHHHhhcCCeEEEcC-C
Confidence 469999999999999999999999999877766666554321111 0 111 112333344567999995 4
Q ss_pred hh
Q 007575 435 AV 436 (597)
Q Consensus 435 aL 436 (597)
.+
T Consensus 242 ~~ 243 (325)
T TIGR01526 242 FI 243 (325)
T ss_pred hH
Confidence 44
No 438
>PRK12338 hypothetical protein; Provisional
Probab=96.64 E-value=0.027 Score=59.88 Aligned_cols=31 Identities=23% Similarity=0.403 Sum_probs=27.3
Q ss_pred CCCceEEeCCCCChHHHHHHHHHHhcCCCee
Q 007575 364 PPRGVLLVGLPGTGKTLLAKAVAGEAEVPFI 394 (597)
Q Consensus 364 ~p~gVLL~GPPGTGKT~LArAIA~el~~pfi 394 (597)
.|.-+++.|+||+|||++|+++|..++.+.+
T Consensus 3 ~p~ii~i~G~sGsGKST~a~~la~~l~~~~~ 33 (319)
T PRK12338 3 KPYVILIGSASGIGKSTIASELARTLNIKHL 33 (319)
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHHCCCeEE
Confidence 4667999999999999999999999987653
No 439
>PRK08099 bifunctional DNA-binding transcriptional repressor/ NMN adenylyltransferase; Provisional
Probab=96.63 E-value=0.0044 Score=67.91 Aligned_cols=40 Identities=23% Similarity=0.170 Sum_probs=32.7
Q ss_pred CCCceEEeCCCCChHHHHHHHHHHhcCCCeeeechhhhHH
Q 007575 364 PPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFVE 403 (597)
Q Consensus 364 ~p~gVLL~GPPGTGKT~LArAIA~el~~pfi~is~sef~~ 403 (597)
..+.|.|.|++|||||+|++++|..+|.+++.--+.++..
T Consensus 218 ~~~~IvI~G~~gsGKTTL~~~La~~~g~~~v~E~~R~~~~ 257 (399)
T PRK08099 218 FVRTVAILGGESSGKSTLVNKLANIFNTTSAWEYGREYVF 257 (399)
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHhCCCeeeeccHHHHH
Confidence 3567999999999999999999999998876655555544
No 440
>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=96.62 E-value=0.0015 Score=62.79 Aligned_cols=28 Identities=36% Similarity=0.692 Sum_probs=26.4
Q ss_pred eEEeCCCCChHHHHHHHHHHhcCCCeee
Q 007575 368 VLLVGLPGTGKTLLAKAVAGEAEVPFIS 395 (597)
Q Consensus 368 VLL~GPPGTGKT~LArAIA~el~~pfi~ 395 (597)
|-+.||||||||++|+.+|..+|.++++
T Consensus 3 ItIsG~pGsG~TTva~~lAe~~gl~~vs 30 (179)
T COG1102 3 ITISGLPGSGKTTVARELAEHLGLKLVS 30 (179)
T ss_pred EEeccCCCCChhHHHHHHHHHhCCceee
Confidence 5688999999999999999999999986
No 441
>PRK09302 circadian clock protein KaiC; Reviewed
Probab=96.62 E-value=0.018 Score=64.90 Aligned_cols=39 Identities=31% Similarity=0.371 Sum_probs=29.7
Q ss_pred CCCCCCceEEeCCCCChHHHHHHHHHHhc----CCCeeeechh
Q 007575 361 GARPPRGVLLVGLPGTGKTLLAKAVAGEA----EVPFISCSAS 399 (597)
Q Consensus 361 g~~~p~gVLL~GPPGTGKT~LArAIA~el----~~pfi~is~s 399 (597)
|.+...-+||+|+||+|||+|+..++.+. |-+.++++..
T Consensus 27 G~p~Gs~~li~G~pGsGKT~l~~qf~~~~~~~~ge~~lyis~e 69 (509)
T PRK09302 27 GLPKGRPTLVSGTAGTGKTLFALQFLVNGIKRFDEPGVFVTFE 69 (509)
T ss_pred CCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhcCCCEEEEEcc
Confidence 55667779999999999999999876432 5676666554
No 442
>cd02022 DPCK Dephospho-coenzyme A kinase (DPCK, EC 2.7.1.24) catalyzes the phosphorylation of dephosphocoenzyme A (dCoA) to yield CoA, which is the final step in CoA biosynthesis.
Probab=96.62 E-value=0.009 Score=57.86 Aligned_cols=38 Identities=26% Similarity=0.334 Sum_probs=29.6
Q ss_pred eEEeCCCCChHHHHHHHHHHhcCCCeeeechhhhHHHHhhc
Q 007575 368 VLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFVELYVGM 408 (597)
Q Consensus 368 VLL~GPPGTGKT~LArAIA~el~~pfi~is~sef~~~~vG~ 408 (597)
|.|+|++|+|||++++.++. +|.+++. ++++.......
T Consensus 2 i~itG~~gsGKst~~~~l~~-~g~~~i~--~D~~~~~~~~~ 39 (179)
T cd02022 2 IGLTGGIGSGKSTVAKLLKE-LGIPVID--ADKIAHEVYEP 39 (179)
T ss_pred EEEECCCCCCHHHHHHHHHH-CCCCEEe--cCHHHHhhhhc
Confidence 68999999999999999998 7877654 45665544433
No 443
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=96.62 E-value=0.0046 Score=64.53 Aligned_cols=37 Identities=22% Similarity=0.184 Sum_probs=28.6
Q ss_pred CCCceEEeCCCCChHHHHHHHHHHhc----C-CCeeeechhh
Q 007575 364 PPRGVLLVGLPGTGKTLLAKAVAGEA----E-VPFISCSASE 400 (597)
Q Consensus 364 ~p~gVLL~GPPGTGKT~LArAIA~el----~-~pfi~is~se 400 (597)
.+..++|+||+|+|||+++..+|..+ + ..+..++++.
T Consensus 193 ~~~vi~~vGptGvGKTTt~~kLa~~~~~~~g~~~V~li~~D~ 234 (282)
T TIGR03499 193 QGGVIALVGPTGVGKTTTLAKLAARFVLEHGNKKVALITTDT 234 (282)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHHcCCCeEEEEECCc
Confidence 45679999999999999999998754 3 5566666554
No 444
>PF00406 ADK: Adenylate kinase; InterPro: IPR000850 Adenylate kinases (ADK) are phosphotransferases that catalyse the reversible reaction AMP + MgATP = ADP + MgADP an essential reaction for many processes in living cells. Two ADK isozymes have been identified in mammalian cells. These specifically bind AMP and favour binding to ATP over other nucleotide triphosphates (AK1 is cytosolic and AK2 is located in the mitochondria). A third ADK has been identified in bovine heart and human cells [], this is a mitochondrial GTP:AMP phosphotransferase, also specific for the phosphorylation of AMP, but can only use GTP or ITP as a substrate []. ADK has also been identified in different bacterial species and in yeast []. Two further enzymes are known to be related to the ADK family, i.e. yeast uridine monophosphokinase and slime mold UMP-CMP kinase. Within the ADK family there are several conserved regions, including the ATP-binding domains. One of the most conserved areas includes an Arg residue, whose modification inactivates the enzyme, together with an Asp that resides in the catalytic cleft of the enzyme and participates in a salt bridge.; GO: 0005524 ATP binding, 0019205 nucleobase-containing compound kinase activity, 0006139 nucleobase-containing compound metabolic process; PDB: 1ZD8_A 3TLX_D 1TEV_A 1ZAK_B 3CM0_A 3ADK_A 1ZIP_A 1ZIO_A 1ZIN_A 3NDP_A ....
Probab=96.60 E-value=0.0038 Score=58.45 Aligned_cols=35 Identities=26% Similarity=0.399 Sum_probs=27.9
Q ss_pred EeCCCCChHHHHHHHHHHhcCCCeeeechhhhHHHHh
Q 007575 370 LVGLPGTGKTLLAKAVAGEAEVPFISCSASEFVELYV 406 (597)
Q Consensus 370 L~GPPGTGKT~LArAIA~el~~pfi~is~sef~~~~v 406 (597)
|.||||+|||++|+.||.+++.+ .++..+++....
T Consensus 1 i~G~PgsGK~t~~~~la~~~~~~--~is~~~llr~~~ 35 (151)
T PF00406_consen 1 ILGPPGSGKGTQAKRLAKRYGLV--HISVGDLLREEI 35 (151)
T ss_dssp EEESTTSSHHHHHHHHHHHHTSE--EEEHHHHHHHHH
T ss_pred CcCCCCCChHHHHHHHHHhcCcc--eechHHHHHHHH
Confidence 68999999999999999998765 455566665544
No 445
>TIGR02239 recomb_RAD51 DNA repair protein RAD51. This eukaryotic sequence family consists of RAD51, a protein involved in DNA homologous recombination and repair. It is similar in sequence the exclusively meiotic recombinase DMC1 (TIGR02238), to archaeal families RadA (TIGR02236) and RadB (TIGR02237), and to bacterial RecA (TIGR02012).
Probab=96.60 E-value=0.004 Score=66.19 Aligned_cols=116 Identities=15% Similarity=0.152 Sum_probs=62.7
Q ss_pred CCCCCCceEEeCCCCChHHHHHHHHHHhcC---------CCeeeechhhh------HHHH--hhcch-------------
Q 007575 361 GARPPRGVLLVGLPGTGKTLLAKAVAGEAE---------VPFISCSASEF------VELY--VGMGA------------- 410 (597)
Q Consensus 361 g~~~p~gVLL~GPPGTGKT~LArAIA~el~---------~pfi~is~sef------~~~~--vG~~e------------- 410 (597)
|..+..-+.++||||+|||+|+..++..+. ...++++..+- .... .+...
T Consensus 92 Gi~~g~i~~i~G~~g~GKT~l~~~~~~~~~~~~~~Gg~~~~vvyIdtE~~f~~~Rl~~ia~~~~~~~~~~l~~i~~~~~~ 171 (316)
T TIGR02239 92 GIETGSITEIFGEFRTGKTQLCHTLAVTCQLPIDQGGGEGKALYIDTEGTFRPERLLAIAERYGLNPEDVLDNVAYARAY 171 (316)
T ss_pred CCCCCeEEEEECCCCCCcCHHHHHHHHHHhhhhhcCCCCceEEEEECCCCCCHHHHHHHHHHcCCChHHhhccEEEEecC
Confidence 455666788999999999999998875321 24455554431 1100 01100
Q ss_pred --H----HHHHHHHHHHhcCCeEEEEcCcchhhhhcCCcccccchhHHHHHHHHHHHHhcCCCCCCcEEEEEec
Q 007575 411 --S----RVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGAT 478 (597)
Q Consensus 411 --~----~vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~eqtLnqLL~emdg~~~~~~VIVIaaT 478 (597)
. .+..+........+++|+||-|-++....-.+ .+....+.+.+.+++..|..+....++.||.+.
T Consensus 172 ~~~~~~~~l~~~~~~~~~~~~~LvVIDSI~al~r~~~~~--~~~~~~rq~~l~~~~~~L~~la~~~~vavv~tN 243 (316)
T TIGR02239 172 NTDHQLQLLQQAAAMMSESRFALLIVDSATALYRTDFSG--RGELSARQMHLARFLRSLQRLADEFGVAVVITN 243 (316)
T ss_pred ChHHHHHHHHHHHHhhccCCccEEEEECcHHHhhhhcCC--cchHHHHHHHHHHHHHHHHHHHHHhCCEEEEEC
Confidence 1 11222222234568899999999986542211 011123334456666666554444455555544
No 446
>PRK14526 adenylate kinase; Provisional
Probab=96.58 E-value=0.0067 Score=60.81 Aligned_cols=34 Identities=29% Similarity=0.546 Sum_probs=27.9
Q ss_pred ceEEeCCCCChHHHHHHHHHHhcCCCeeeechhhhH
Q 007575 367 GVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFV 402 (597)
Q Consensus 367 gVLL~GPPGTGKT~LArAIA~el~~pfi~is~sef~ 402 (597)
.++|.||||+|||++++.+|++++.++++ ..+++
T Consensus 2 ~i~l~G~pGsGKsT~a~~La~~~~~~~is--~G~ll 35 (211)
T PRK14526 2 KLVFLGPPGSGKGTIAKILSNELNYYHIS--TGDLF 35 (211)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCceee--cChHH
Confidence 37899999999999999999998877654 34443
No 447
>PRK05541 adenylylsulfate kinase; Provisional
Probab=96.58 E-value=0.0052 Score=59.00 Aligned_cols=41 Identities=29% Similarity=0.361 Sum_probs=30.9
Q ss_pred CCCCceEEeCCCCChHHHHHHHHHHhcC---CCeeeechhhhHH
Q 007575 363 RPPRGVLLVGLPGTGKTLLAKAVAGEAE---VPFISCSASEFVE 403 (597)
Q Consensus 363 ~~p~gVLL~GPPGTGKT~LArAIA~el~---~pfi~is~sef~~ 403 (597)
..|.-++|.|+||+|||++|++++.++. ...+.++...+..
T Consensus 5 ~~~~~I~i~G~~GsGKst~a~~l~~~l~~~~~~~~~~~~d~~r~ 48 (176)
T PRK05541 5 PNGYVIWITGLAGSGKTTIAKALYERLKLKYSNVIYLDGDELRE 48 (176)
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHHHHHHHcCCcEEEEecHHHHh
Confidence 3466799999999999999999999875 2345555555443
No 448
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=96.57 E-value=0.0093 Score=57.76 Aligned_cols=27 Identities=41% Similarity=0.465 Sum_probs=23.1
Q ss_pred CCCCceEEeCCCCChHHHHHHHHHHhc
Q 007575 363 RPPRGVLLVGLPGTGKTLLAKAVAGEA 389 (597)
Q Consensus 363 ~~p~gVLL~GPPGTGKT~LArAIA~el 389 (597)
.+...+.|.||+|+|||+|++.+++..
T Consensus 24 ~~G~~~~i~G~nGsGKSTLl~~l~G~~ 50 (182)
T cd03215 24 RAGEIVGIAGLVGNGQTELAEALFGLR 50 (182)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 344568999999999999999999864
No 449
>COG1936 Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism]
Probab=96.57 E-value=0.0041 Score=60.38 Aligned_cols=34 Identities=29% Similarity=0.460 Sum_probs=29.0
Q ss_pred ceEEeCCCCChHHHHHHHHHHhcCCCeeeechhhhHH
Q 007575 367 GVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFVE 403 (597)
Q Consensus 367 gVLL~GPPGTGKT~LArAIA~el~~pfi~is~sef~~ 403 (597)
.++++|.||||||++++.++ ++|.++++++ +|..
T Consensus 2 ~I~ITGTPGvGKTT~~~~L~-~lg~~~i~l~--el~~ 35 (180)
T COG1936 2 LIAITGTPGVGKTTVCKLLR-ELGYKVIELN--ELAK 35 (180)
T ss_pred eEEEeCCCCCchHHHHHHHH-HhCCceeeHH--HHHH
Confidence 37899999999999999999 9898888765 5543
No 450
>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Probab=96.56 E-value=0.018 Score=56.50 Aligned_cols=27 Identities=33% Similarity=0.573 Sum_probs=23.7
Q ss_pred CCCCceEEeCCCCChHHHHHHHHHHhc
Q 007575 363 RPPRGVLLVGLPGTGKTLLAKAVAGEA 389 (597)
Q Consensus 363 ~~p~gVLL~GPPGTGKT~LArAIA~el 389 (597)
.+...+.|.||+|+|||+|.+.+++..
T Consensus 33 ~~Ge~~~l~G~nGsGKStLl~~i~Gl~ 59 (194)
T cd03213 33 KPGELTAIMGPSGAGKSTLLNALAGRR 59 (194)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 445578999999999999999999976
No 451
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=96.56 E-value=0.0088 Score=58.35 Aligned_cols=72 Identities=25% Similarity=0.180 Sum_probs=42.9
Q ss_pred CCCceEEeCCCCChHHHHHHHHHHhcCCC--eeeechhhh--HHHHh-hcchHHHHHHHHHHHhcCCeEEEEcCcch
Q 007575 364 PPRGVLLVGLPGTGKTLLAKAVAGEAEVP--FISCSASEF--VELYV-GMGASRVRDLFARAKKEAPSIIFIDEIDA 435 (597)
Q Consensus 364 ~p~gVLL~GPPGTGKT~LArAIA~el~~p--fi~is~sef--~~~~v-G~~e~~vr~lF~~A~~~aP~ILfIDEIDa 435 (597)
+..-+.|.||.|+|||+|++.+++..... -+.+++..+ ..... -.+..+.+-.+..+....|.++++||--+
T Consensus 24 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~q~~~LSgGq~qrv~laral~~~p~lllLDEPts 100 (177)
T cd03222 24 EGEVIGIVGPNGTGKTTAVKILAGQLIPNGDNDEWDGITPVYKPQYIDLSGGELQRVAIAAALLRNATFYLFDEPSA 100 (177)
T ss_pred CCCEEEEECCCCChHHHHHHHHHcCCCCCCcEEEECCEEEEEEcccCCCCHHHHHHHHHHHHHhcCCCEEEEECCcc
Confidence 34468899999999999999999865210 111111100 00000 11122344456666677899999999743
No 452
>PRK06581 DNA polymerase III subunit delta'; Validated
Probab=96.56 E-value=0.059 Score=55.33 Aligned_cols=148 Identities=12% Similarity=0.062 Sum_probs=98.3
Q ss_pred CCCceEEeCCCC-ChHHHHHHHHHHhcCC---------CeeeechhhhHHH-HhhcchHHHHHHHHHHHh----cCCeEE
Q 007575 364 PPRGVLLVGLPG-TGKTLLAKAVAGEAEV---------PFISCSASEFVEL-YVGMGASRVRDLFARAKK----EAPSII 428 (597)
Q Consensus 364 ~p~gVLL~GPPG-TGKT~LArAIA~el~~---------pfi~is~sef~~~-~vG~~e~~vr~lF~~A~~----~aP~IL 428 (597)
.....|+.|..+ +||..++.-++..+.. .++.+....-... --.-+...+|++.+.+.. +...|+
T Consensus 14 LshAYLfeG~n~~~~~~~~~~f~~~~l~~~~i~~~~HPD~~~I~pe~~~~~~~~~I~IdqIReL~~~l~~~p~~g~~KVi 93 (263)
T PRK06581 14 LYNSWLIEAENIEQALKDLEKFIYIKLFKNSIPLENNPDYHFIARETSATSNAKNISIEQIRKLQDFLSKTSAISGYKVA 93 (263)
T ss_pred chheeeEeCCChhhHHHHHHHHHHHHHhccCcccCCCCCEEEEeccccccccCCcccHHHHHHHHHHHhhCcccCCcEEE
Confidence 345689999998 9999998887775422 2333321100000 001244567777665542 345699
Q ss_pred EEcCcchhhhhcCCcccccchhHHHHHHHHHHHHhcCCCCCCcEEEEEecCCCCCCChhhhCCCCcceEEEecCCCHHHH
Q 007575 429 FIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATNRSDVLDPALRRPGRFDRVVMVETPDKIGR 508 (597)
Q Consensus 429 fIDEIDaL~~~r~~~~~~~~~~e~eqtLnqLL~emdg~~~~~~VIVIaaTNrpd~LD~aLlRpgRFd~~I~v~~Pd~~eR 508 (597)
+|+++|.+.. ...|.||..+++ ++.++++|..|..++.+.|.+++ |+. .+.++.|+...-
T Consensus 94 II~~ae~mt~---------------~AANALLKtLEE--PP~~t~fILit~~~~~LLpTIrS--RCq-~i~~~~p~~~~~ 153 (263)
T PRK06581 94 IIYSAELMNL---------------NAANSCLKILED--APKNSYIFLITSRAASIISTIRS--RCF-KINVRSSILHAY 153 (263)
T ss_pred EEechHHhCH---------------HHHHHHHHhhcC--CCCCeEEEEEeCChhhCchhHhh--ceE-EEeCCCCCHHHH
Confidence 9999999863 355999999994 56677888888889999999998 774 789999988777
Q ss_pred HHHHHHHHhcCCCCCCCCCCHHHHHHh
Q 007575 509 EAILKVHVSKKELPLAKDIDLGDIASM 535 (597)
Q Consensus 509 ~eILk~~l~~~~~~l~~dvdl~~LA~~ 535 (597)
.+.....+. +...+.-++-|.+.
T Consensus 154 ~e~~~~~~~----p~~~~~~l~~i~~~ 176 (263)
T PRK06581 154 NELYSQFIQ----PIADNKTLDFINRF 176 (263)
T ss_pred HHHHHHhcc----cccccHHHHHHHHH
Confidence 777776653 33333335555544
No 453
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [].; GO: 0005524 ATP binding; PDB: 3B85_A.
Probab=96.55 E-value=0.0022 Score=64.11 Aligned_cols=23 Identities=52% Similarity=0.531 Sum_probs=18.4
Q ss_pred ceEEeCCCCChHHHHHHHHHHhc
Q 007575 367 GVLLVGLPGTGKTLLAKAVAGEA 389 (597)
Q Consensus 367 gVLL~GPPGTGKT~LArAIA~el 389 (597)
-+.+.||.|||||+||-+.|-++
T Consensus 21 ~v~~~G~AGTGKT~LA~a~Al~~ 43 (205)
T PF02562_consen 21 LVIVNGPAGTGKTFLALAAALEL 43 (205)
T ss_dssp EEEEE--TTSSTTHHHHHHHHHH
T ss_pred eEEEECCCCCcHHHHHHHHHHHH
Confidence 48899999999999999998654
No 454
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.55 E-value=0.0086 Score=57.51 Aligned_cols=27 Identities=33% Similarity=0.324 Sum_probs=23.0
Q ss_pred CCCCceEEeCCCCChHHHHHHHHHHhc
Q 007575 363 RPPRGVLLVGLPGTGKTLLAKAVAGEA 389 (597)
Q Consensus 363 ~~p~gVLL~GPPGTGKT~LArAIA~el 389 (597)
.+...+.|.||+|+|||+|++.+++..
T Consensus 24 ~~Ge~~~i~G~nGsGKStLl~~l~G~~ 50 (173)
T cd03230 24 EKGEIYGLLGPNGAGKTTLIKIILGLL 50 (173)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 344568999999999999999999864
No 455
>cd01125 repA Hexameric Replicative Helicase RepA. RepA is encoded by a plasmid, which is found in most Gram negative bacteria. RepA is a 5'-3' DNA helicase which can utilize ATP, GTP and CTP to a lesser extent.
Probab=96.55 E-value=0.0089 Score=60.50 Aligned_cols=20 Identities=40% Similarity=0.346 Sum_probs=18.2
Q ss_pred eEEeCCCCChHHHHHHHHHH
Q 007575 368 VLLVGLPGTGKTLLAKAVAG 387 (597)
Q Consensus 368 VLL~GPPGTGKT~LArAIA~ 387 (597)
.+|+||||+|||+|+-.+|-
T Consensus 4 ~ll~g~~G~GKS~lal~la~ 23 (239)
T cd01125 4 SALVAPGGTGKSSLLLVLAL 23 (239)
T ss_pred eEEEcCCCCCHHHHHHHHHH
Confidence 58999999999999998875
No 456
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=96.53 E-value=0.02 Score=59.66 Aligned_cols=38 Identities=24% Similarity=0.395 Sum_probs=28.3
Q ss_pred CCCCCceEEeCCCCChHHHHHHHHHHhc---CCCeeeechh
Q 007575 362 ARPPRGVLLVGLPGTGKTLLAKAVAGEA---EVPFISCSAS 399 (597)
Q Consensus 362 ~~~p~gVLL~GPPGTGKT~LArAIA~el---~~pfi~is~s 399 (597)
...++-++|+||+|+|||+++..+|..+ +..+..++++
T Consensus 69 ~~~~~vi~l~G~~G~GKTTt~akLA~~l~~~g~~V~li~~D 109 (272)
T TIGR00064 69 ENKPNVILFVGVNGVGKTTTIAKLANKLKKQGKSVLLAAGD 109 (272)
T ss_pred CCCCeEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEeCC
Confidence 3456788999999999999999988755 4445445444
No 457
>PLN02199 shikimate kinase
Probab=96.53 E-value=0.013 Score=61.76 Aligned_cols=33 Identities=33% Similarity=0.607 Sum_probs=29.9
Q ss_pred CCceEEeCCCCChHHHHHHHHHHhcCCCeeeec
Q 007575 365 PRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCS 397 (597)
Q Consensus 365 p~gVLL~GPPGTGKT~LArAIA~el~~pfi~is 397 (597)
.++|+|+|.+|+|||++++.+|+.++.+|+..+
T Consensus 102 ~~~I~LIG~~GSGKSTVgr~LA~~Lg~~fIDtD 134 (303)
T PLN02199 102 GRSMYLVGMMGSGKTTVGKLMSKVLGYTFFDCD 134 (303)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhCCCEEehH
Confidence 447999999999999999999999999998654
No 458
>COG2805 PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=96.52 E-value=0.0085 Score=62.86 Aligned_cols=69 Identities=22% Similarity=0.356 Sum_probs=47.8
Q ss_pred ceEEeCCCCChHHHHHHHHHHhcC----CCeeeech-hhhH---------HHHhhcchHHHHHHHHHHHhcCCeEEEEcC
Q 007575 367 GVLLVGLPGTGKTLLAKAVAGEAE----VPFISCSA-SEFV---------ELYVGMGASRVRDLFARAKKEAPSIIFIDE 432 (597)
Q Consensus 367 gVLL~GPPGTGKT~LArAIA~el~----~pfi~is~-sef~---------~~~vG~~e~~vr~lF~~A~~~aP~ILfIDE 432 (597)
=||++||.|+|||+...++-++.| .+.+.+.- -+|+ ..-+|.........++.|.+..|+||++-|
T Consensus 127 LILVTGpTGSGKSTTlAamId~iN~~~~~HIlTIEDPIE~vh~skkslI~QREvG~dT~sF~~aLraALReDPDVIlvGE 206 (353)
T COG2805 127 LILVTGPTGSGKSTTLAAMIDYINKHKAKHILTIEDPIEYVHESKKSLINQREVGRDTLSFANALRAALREDPDVILVGE 206 (353)
T ss_pred eEEEeCCCCCcHHHHHHHHHHHHhccCCcceEEecCchHhhhcchHhhhhHHHhcccHHHHHHHHHHHhhcCCCEEEEec
Confidence 378889999999999888888764 23333321 1221 123555555666778888889999999999
Q ss_pred cch
Q 007575 433 IDA 435 (597)
Q Consensus 433 IDa 435 (597)
+-.
T Consensus 207 mRD 209 (353)
T COG2805 207 MRD 209 (353)
T ss_pred ccc
Confidence 843
No 459
>COG1066 Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones]
Probab=96.52 E-value=0.018 Score=62.76 Aligned_cols=80 Identities=26% Similarity=0.449 Sum_probs=60.7
Q ss_pred CCCCCCceEEeCCCCChHHHHHHHHHHhc--CCCeeeechhhhHHHH------hh--------cchHHHHHHHHHHHhcC
Q 007575 361 GARPPRGVLLVGLPGTGKTLLAKAVAGEA--EVPFISCSASEFVELY------VG--------MGASRVRDLFARAKKEA 424 (597)
Q Consensus 361 g~~~p~gVLL~GPPGTGKT~LArAIA~el--~~pfi~is~sef~~~~------vG--------~~e~~vr~lF~~A~~~a 424 (597)
|.-+..-+||-|.||.|||+|.-.++..+ ..+++++++.+-.... .| ..+-.+.++++.+....
T Consensus 89 G~V~Gs~iLIgGdPGIGKSTLLLQva~~lA~~~~vLYVsGEES~~QiklRA~RL~~~~~~l~l~aEt~~e~I~~~l~~~~ 168 (456)
T COG1066 89 GLVPGSVILIGGDPGIGKSTLLLQVAARLAKRGKVLYVSGEESLQQIKLRADRLGLPTNNLYLLAETNLEDIIAELEQEK 168 (456)
T ss_pred CcccccEEEEccCCCCCHHHHHHHHHHHHHhcCcEEEEeCCcCHHHHHHHHHHhCCCccceEEehhcCHHHHHHHHHhcC
Confidence 34555668889999999999888777654 2389999987655442 11 13446788889999999
Q ss_pred CeEEEEcCcchhhhhc
Q 007575 425 PSIIFIDEIDAVAKSR 440 (597)
Q Consensus 425 P~ILfIDEIDaL~~~r 440 (597)
|.+++||-|+.+....
T Consensus 169 p~lvVIDSIQT~~s~~ 184 (456)
T COG1066 169 PDLVVIDSIQTLYSEE 184 (456)
T ss_pred CCEEEEeccceeeccc
Confidence 9999999999998654
No 460
>COG4088 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=96.50 E-value=0.0063 Score=60.78 Aligned_cols=22 Identities=50% Similarity=0.853 Sum_probs=20.9
Q ss_pred eEEeCCCCChHHHHHHHHHHhc
Q 007575 368 VLLVGLPGTGKTLLAKAVAGEA 389 (597)
Q Consensus 368 VLL~GPPGTGKT~LArAIA~el 389 (597)
++|+|+||+|||++|+-+|+++
T Consensus 4 iIlTGyPgsGKTtfakeLak~L 25 (261)
T COG4088 4 IILTGYPGSGKTTFAKELAKEL 25 (261)
T ss_pred EEEecCCCCCchHHHHHHHHHH
Confidence 7899999999999999999987
No 461
>PRK14737 gmk guanylate kinase; Provisional
Probab=96.50 E-value=0.0037 Score=61.36 Aligned_cols=26 Identities=23% Similarity=0.482 Sum_probs=22.9
Q ss_pred CCCceEEeCCCCChHHHHHHHHHHhc
Q 007575 364 PPRGVLLVGLPGTGKTLLAKAVAGEA 389 (597)
Q Consensus 364 ~p~gVLL~GPPGTGKT~LArAIA~el 389 (597)
.|+-++|+||+|+|||+|++++..+.
T Consensus 3 ~~~~ivl~GpsG~GK~tl~~~l~~~~ 28 (186)
T PRK14737 3 SPKLFIISSVAGGGKSTIIQALLEEH 28 (186)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHhcC
Confidence 45678999999999999999998764
No 462
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=96.45 E-value=0.025 Score=62.51 Aligned_cols=196 Identities=16% Similarity=0.203 Sum_probs=95.9
Q ss_pred CCCCceEEeCCCCChHHHHHHHHHHhc---CCCeeeechhhhH-------HHH--------hh-----cchHHHHHHHHH
Q 007575 363 RPPRGVLLVGLPGTGKTLLAKAVAGEA---EVPFISCSASEFV-------ELY--------VG-----MGASRVRDLFAR 419 (597)
Q Consensus 363 ~~p~gVLL~GPPGTGKT~LArAIA~el---~~pfi~is~sef~-------~~~--------vG-----~~e~~vr~lF~~ 419 (597)
..|.-++|+|++|+|||+++..+|..+ |..+..++++.+. ..+ .+ ......++.++.
T Consensus 98 ~~~~vi~lvG~~GvGKTTtaaKLA~~l~~~G~kV~lV~~D~~R~aA~eQLk~~a~~~~vp~~~~~~~~dp~~i~~~~l~~ 177 (429)
T TIGR01425 98 GKQNVIMFVGLQGSGKTTTCTKLAYYYQRKGFKPCLVCADTFRAGAFDQLKQNATKARIPFYGSYTESDPVKIASEGVEK 177 (429)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEcCcccchhHHHHHHHHhhccCCeEEeecCCCCHHHHHHHHHHH
Confidence 346779999999999999999998765 5566666654321 000 10 011223445666
Q ss_pred HHhcCCeEEEEcCcchhhhhcCCcccccchhHHHHHHHHHHHHhcCCCCCCcEEEEEecCCCCCCC--hhhhCCCCcceE
Q 007575 420 AKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATNRSDVLD--PALRRPGRFDRV 497 (597)
Q Consensus 420 A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~eqtLnqLL~emdg~~~~~~VIVIaaTNrpd~LD--~aLlRpgRFd~~ 497 (597)
++...-.+|+||=...+. .+ +..+.++....+...+...++|+-++.-.+.++ .++...-.++ -
T Consensus 178 ~~~~~~DvViIDTaGr~~----------~d---~~lm~El~~i~~~~~p~e~lLVlda~~Gq~a~~~a~~F~~~~~~~-g 243 (429)
T TIGR01425 178 FKKENFDIIIVDTSGRHK----------QE---DSLFEEMLQVAEAIQPDNIIFVMDGSIGQAAEAQAKAFKDSVDVG-S 243 (429)
T ss_pred HHhCCCCEEEEECCCCCc----------ch---HHHHHHHHHHhhhcCCcEEEEEeccccChhHHHHHHHHHhccCCc-E
Confidence 665556788888663321 11 223333333333223333344444443322222 2222211222 2
Q ss_pred EEecCCCHHHHH-HHHHHHHhcCCCC---------C--CCCCCHHHHHHhCCCCCHHHHHHHHHHHHHH---------HH
Q 007575 498 VMVETPDKIGRE-AILKVHVSKKELP---------L--AKDIDLGDIASMTTGFTGADLANLVNEAALL---------AG 556 (597)
Q Consensus 498 I~v~~Pd~~eR~-eILk~~l~~~~~~---------l--~~dvdl~~LA~~t~G~SgaDL~~Lv~eAal~---------A~ 556 (597)
+.+...|...|- .+|..... .+.| + -...+.+.++.+.-|. +|+..|++.|... +.
T Consensus 244 ~IlTKlD~~argG~aLs~~~~-t~~PI~fig~Ge~v~Dle~f~p~~~~~rilgm--gDi~~L~ek~~~~~~~~~~~~~~~ 320 (429)
T TIGR01425 244 VIITKLDGHAKGGGALSAVAA-TKSPIIFIGTGEHIDDFEIFKTQPFISKLLGM--GDIEGLIDKVQDLKLDDNEKALIE 320 (429)
T ss_pred EEEECccCCCCccHHhhhHHH-HCCCeEEEcCCCChhhcCcCChHHHHHHHhcC--CCcHHHHHHHHHhhhHHHHHHHHH
Confidence 344455555444 22322211 1111 1 1223456666666553 4666666654322 11
Q ss_pred hcCCCcccHHHHHHHHHHH
Q 007575 557 RLNKVVVEKIDFIHAVERS 575 (597)
Q Consensus 557 r~~~~~It~~d~~~Al~~v 575 (597)
+-.+...+.+||.+-++.+
T Consensus 321 k~~~~~f~l~D~~~q~~~i 339 (429)
T TIGR01425 321 KLKEGTFTLRDMYEQFQNL 339 (429)
T ss_pred HHHhCCCCHHHHHHHHHHH
Confidence 1123457888887776654
No 463
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.45 E-value=0.023 Score=55.53 Aligned_cols=26 Identities=38% Similarity=0.584 Sum_probs=22.3
Q ss_pred CCCCceEEeCCCCChHHHHHHHHHHh
Q 007575 363 RPPRGVLLVGLPGTGKTLLAKAVAGE 388 (597)
Q Consensus 363 ~~p~gVLL~GPPGTGKT~LArAIA~e 388 (597)
.+...+.|.||+|+|||+|++.+++.
T Consensus 31 ~~Ge~~~l~G~nGsGKSTLl~~l~G~ 56 (192)
T cd03232 31 KPGTLTALMGESGAGKTTLLDVLAGR 56 (192)
T ss_pred eCCcEEEEECCCCCCHHHHHHHHhCC
Confidence 34456899999999999999999974
No 464
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=96.44 E-value=0.0019 Score=57.59 Aligned_cols=22 Identities=41% Similarity=0.721 Sum_probs=21.0
Q ss_pred eEEeCCCCChHHHHHHHHHHhc
Q 007575 368 VLLVGLPGTGKTLLAKAVAGEA 389 (597)
Q Consensus 368 VLL~GPPGTGKT~LArAIA~el 389 (597)
|+|.|+||+|||++|+.++.++
T Consensus 1 I~i~G~~GsGKtTia~~L~~~~ 22 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAERL 22 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEECCCCCCHHHHHHHHHHHH
Confidence 6899999999999999999987
No 465
>PRK01184 hypothetical protein; Provisional
Probab=96.42 E-value=0.0028 Score=61.23 Aligned_cols=29 Identities=34% Similarity=0.636 Sum_probs=25.6
Q ss_pred ceEEeCCCCChHHHHHHHHHHhcCCCeeee
Q 007575 367 GVLLVGLPGTGKTLLAKAVAGEAEVPFISC 396 (597)
Q Consensus 367 gVLL~GPPGTGKT~LArAIA~el~~pfi~i 396 (597)
-|+|+||||+|||++++ ++.++|.+++..
T Consensus 3 ~i~l~G~~GsGKsT~a~-~~~~~g~~~i~~ 31 (184)
T PRK01184 3 IIGVVGMPGSGKGEFSK-IAREMGIPVVVM 31 (184)
T ss_pred EEEEECCCCCCHHHHHH-HHHHcCCcEEEh
Confidence 48899999999999998 788999888765
No 466
>PRK12337 2-phosphoglycerate kinase; Provisional
Probab=96.40 E-value=0.057 Score=60.16 Aligned_cols=31 Identities=35% Similarity=0.486 Sum_probs=28.0
Q ss_pred CCCCceEEeCCCCChHHHHHHHHHHhcCCCe
Q 007575 363 RPPRGVLLVGLPGTGKTLLAKAVAGEAEVPF 393 (597)
Q Consensus 363 ~~p~gVLL~GPPGTGKT~LArAIA~el~~pf 393 (597)
+.|.-++++|+||+|||++|..+|..++...
T Consensus 253 k~p~vil~~G~~G~GKSt~a~~LA~~lg~~~ 283 (475)
T PRK12337 253 PRPLHVLIGGVSGVGKSVLASALAYRLGITR 283 (475)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHcCCcE
Confidence 3588899999999999999999999999863
No 467
>KOG0058 consensus Peptide exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.39 E-value=0.012 Score=67.69 Aligned_cols=29 Identities=34% Similarity=0.414 Sum_probs=24.5
Q ss_pred CCCCCCceEEeCCCCChHHHHHHHHHHhc
Q 007575 361 GARPPRGVLLVGLPGTGKTLLAKAVAGEA 389 (597)
Q Consensus 361 g~~~p~gVLL~GPPGTGKT~LArAIA~el 389 (597)
..+|...+-|+||+|.|||++|..+-+-+
T Consensus 490 ti~pGe~vALVGPSGsGKSTiasLL~rfY 518 (716)
T KOG0058|consen 490 TIRPGEVVALVGPSGSGKSTIASLLLRFY 518 (716)
T ss_pred eeCCCCEEEEECCCCCCHHHHHHHHHHhc
Confidence 35667789999999999999999997643
No 468
>PF13481 AAA_25: AAA domain; PDB: 1G8Y_J 1OLO_A 1NLF_C.
Probab=96.39 E-value=0.0057 Score=59.13 Aligned_cols=73 Identities=25% Similarity=0.357 Sum_probs=40.8
Q ss_pred ceEEeCCCCChHHHHHHHHHHhc-------------CCCeeeechhh----hHHHH---------------hh-------
Q 007575 367 GVLLVGLPGTGKTLLAKAVAGEA-------------EVPFISCSASE----FVELY---------------VG------- 407 (597)
Q Consensus 367 gVLL~GPPGTGKT~LArAIA~el-------------~~pfi~is~se----f~~~~---------------vG------- 407 (597)
-++|+||||+|||+++-.++..+ +.+++.++... +...+ ..
T Consensus 34 l~~i~g~~g~GKT~~~~~l~~~~~~g~~~~g~~~~~~~~Vl~i~~E~~~~~~~~rl~~~~~~~~~~~~~~~~~~~~~~~~ 113 (193)
T PF13481_consen 34 LTLIAGPPGSGKTTLALQLAAALATGRPFLGELPPRPGRVLYISLEDSESQIARRLRALLQDYDDDANLFFVDLSNWGCI 113 (193)
T ss_dssp EEEEEECSTSSHHHHHHHHHHHHHT---TT---------EEEEESSS-HHHHHHHHHHHHTTS-HHHHHHHHHH--E-EE
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHHhCCccCCcccccCceEEEEeccCCHHHHHHHHHHHhcccCCccceEEeeccccccc
Confidence 48899999999999999887643 23555554321 11110 00
Q ss_pred ----------cchHHHHHHHHHHHh-cCCeEEEEcCcchhhhh
Q 007575 408 ----------MGASRVRDLFARAKK-EAPSIIFIDEIDAVAKS 439 (597)
Q Consensus 408 ----------~~e~~vr~lF~~A~~-~aP~ILfIDEIDaL~~~ 439 (597)
.....+..+.+.+.. ..|.+|+||-+..+...
T Consensus 114 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~lvviD~l~~~~~~ 156 (193)
T PF13481_consen 114 RLFEPDSGGPLLDEDLEELEAALKELYGPDLVVIDPLQSLHDG 156 (193)
T ss_dssp ---TTS---TTSHHHHHHHHHHHTT----SEEEEE-GGGG--S
T ss_pred eeeecccccccchHHHHHHHHHHhhcCCCcEEEEcCHHHHhcC
Confidence 011234455666666 56889999999999755
No 469
>PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=96.38 E-value=0.02 Score=65.47 Aligned_cols=28 Identities=36% Similarity=0.437 Sum_probs=24.4
Q ss_pred CCCCCceEEeCCCCChHHHHHHHHHHhc
Q 007575 362 ARPPRGVLLVGLPGTGKTLLAKAVAGEA 389 (597)
Q Consensus 362 ~~~p~gVLL~GPPGTGKT~LArAIA~el 389 (597)
.++...+.|+||+|+|||+|++.+++.+
T Consensus 373 i~~G~~vaIvG~SGsGKSTL~~lL~g~~ 400 (588)
T PRK11174 373 LPAGQRIALVGPSGAGKTSLLNALLGFL 400 (588)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 4556679999999999999999999865
No 470
>PF12780 AAA_8: P-loop containing dynein motor region D4; InterPro: IPR024317 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules, of which four (D1 - D4) correspond to the ATP binding sites with P-loop signatures described previously, and two (D5, D6) are modules in which the P loop has been lost in evolution. This particular entry represents the D4 ATP-binding domain of the motor [].; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=96.37 E-value=0.019 Score=59.64 Aligned_cols=218 Identities=16% Similarity=0.184 Sum_probs=112.7
Q ss_pred cccCChHHHHHHHHHHHHhcChhHHhhcCCCCCCceEEeCCCCChHHHHHHHHHHhcCCCeeeechhhhHHHHhhcchHH
Q 007575 333 DVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFVELYVGMGASR 412 (597)
Q Consensus 333 dV~G~de~k~~L~eiv~~l~~p~~~~~lg~~~p~gVLL~GPPGTGKT~LArAIA~el~~pfi~is~sef~~~~vG~~e~~ 412 (597)
+++-.+++.+.+-.+..-+..|. .++||.|.+|+||++++|..|.-++..++.+..+.-.+ ..+-...
T Consensus 9 ~lVlf~~ai~hi~ri~RvL~~~~----------Gh~LLvG~~GsGr~sl~rLaa~i~~~~~~~i~~~~~y~--~~~f~~d 76 (268)
T PF12780_consen 9 NLVLFDEAIEHIARISRVLSQPR----------GHALLVGVGGSGRQSLARLAAFICGYEVFQIEITKGYS--IKDFKED 76 (268)
T ss_dssp -----HHHHHHHHHHHHHHCSTT----------EEEEEECTTTSCHHHHHHHHHHHTTEEEE-TTTSTTTH--HHHHHHH
T ss_pred ceeeHHHHHHHHHHHHHHHcCCC----------CCeEEecCCCccHHHHHHHHHHHhccceEEEEeeCCcC--HHHHHHH
Confidence 56778888888888887776652 47999999999999999999998899998887543211 1112345
Q ss_pred HHHHHHHHH-hcCCeEEEEcCcch-----------hhhhcCCcccccchhHHHHHHHHHHHHhcC--CC-----------
Q 007575 413 VRDLFARAK-KEAPSIIFIDEIDA-----------VAKSRDGRFRIVSNDEREQTLNQLLTEMDG--FD----------- 467 (597)
Q Consensus 413 vr~lF~~A~-~~aP~ILfIDEIDa-----------L~~~r~~~~~~~~~~e~eqtLnqLL~emdg--~~----------- 467 (597)
++.++..|. ++.|.+++|+|-+- |... +.-...-..+|.+..++.+-..+.. +.
T Consensus 77 Lk~~~~~ag~~~~~~vfll~d~qi~~~~fLe~in~LL~s-Geip~LF~~eE~~~i~~~l~~~~~~~~~~~~~~~~~~~F~ 155 (268)
T PF12780_consen 77 LKKALQKAGIKGKPTVFLLTDSQIVDESFLEDINSLLSS-GEIPNLFTKEELDNIISSLREEAKAEGISDSRESLYEFFI 155 (268)
T ss_dssp HHHHHHHHHCS-S-EEEEEECCCSSSCHHHHHHHHHHHC-SS-TTTS-TCHHHHHHHHHHHHHHHCT--SSHHHHHHHHH
T ss_pred HHHHHHHHhccCCCeEEEecCcccchHhHHHHHHHHHhC-CCCCCCccHHHHHHHHHHhHHHHHHcCCCCchHHHHHHHH
Confidence 666666665 45688888887432 2111 1111123457788887777655432 11
Q ss_pred ----CCCcEEEEEecCCCCCC------ChhhhCCCCcceEEEecCCCHHHHHHHHHHHHhcCCCCCCCCCCHHHHHHhCC
Q 007575 468 ----SNSAVIVLGATNRSDVL------DPALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTT 537 (597)
Q Consensus 468 ----~~~~VIVIaaTNrpd~L------D~aLlRpgRFd~~I~v~~Pd~~eR~eILk~~l~~~~~~l~~dvdl~~LA~~t~ 537 (597)
.+-.|+++... ..+.+ -|+|.. + ..+..+...+.+....+-..++.+... +.++ .-+.++..+
T Consensus 156 ~rvr~nLHivl~~sp-~~~~~r~~~~~fPaL~~--~-ctIdW~~~W~~eaL~~Va~~~l~~~~~-~~~~-~~~~l~~~~- 228 (268)
T PF12780_consen 156 ERVRKNLHIVLCMSP-VGPNFRDRCRSFPALVN--C-CTIDWFDPWPEEALLSVANKFLSDIEL-LSEE-LKKSLAEIM- 228 (268)
T ss_dssp HHHCCCEEEEEEEST-TTTCCCHHHHHHCCHHH--H-SEEEEEES--HHHHHHHHHHHCCHHHT-SS---HHHHHHHHH-
T ss_pred HHHHhheeEEEEECC-CCchHHHHHHhCcchhc--c-cEEEeCCcCCHHHHHHHHHHHHHhhcc-cchh-HHHHHHHHH-
Confidence 11134433333 23333 255555 3 345677777778888888887764311 1111 123333222
Q ss_pred CCCHHHHHHHHHHHHHH--HHhcCCCcccHHHHHHHHHH
Q 007575 538 GFTGADLANLVNEAALL--AGRLNKVVVEKIDFIHAVER 574 (597)
Q Consensus 538 G~SgaDL~~Lv~eAal~--A~r~~~~~It~~d~~~Al~~ 574 (597)
..+..-+.+.+.. ...+....||...+.+-+.-
T Consensus 229 ----~~iH~sv~~~s~~y~~~~~r~~yvTP~syL~~i~~ 263 (268)
T PF12780_consen 229 ----VFIHQSVEEISRKYLQELRRYNYVTPKSYLEFIKT 263 (268)
T ss_dssp ----HHHHHHHHHHHHHHHHHCS------HHHHHHHHH-
T ss_pred ----HHHhccchHhHHHHHHHcCCcceECcHHHHHHHhh
Confidence 2333334443222 22234457888877665543
No 471
>TIGR02533 type_II_gspE general secretory pathway protein E. This family describes GspE, the E protein of the type II secretion system, also called the main terminal branch of the general secretion pathway. This model separates GspE from the PilB protein of type IV pilin biosynthesis.
Probab=96.37 E-value=0.0081 Score=67.48 Aligned_cols=94 Identities=19% Similarity=0.306 Sum_probs=59.7
Q ss_pred CcccccccCChHHHHHHHHHHHHhcChhHHhhcCCCCCCc-eEEeCCCCChHHHHHHHHHHhcC---CCeeeechh-hhH
Q 007575 328 TITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRG-VLLVGLPGTGKTLLAKAVAGEAE---VPFISCSAS-EFV 402 (597)
Q Consensus 328 ~vtf~dV~G~de~k~~L~eiv~~l~~p~~~~~lg~~~p~g-VLL~GPPGTGKT~LArAIA~el~---~pfi~is~s-ef~ 402 (597)
..+++++.-.++..+.|+.++. .+.| +|++||+|+|||++..++..+++ ..++++.-+ ++.
T Consensus 218 ~~~l~~Lg~~~~~~~~l~~~~~--------------~~~GlilitGptGSGKTTtL~a~L~~l~~~~~~iiTiEDpvE~~ 283 (486)
T TIGR02533 218 RLDLETLGMSPELLSRFERLIR--------------RPHGIILVTGPTGSGKTTTLYAALSRLNTPERNILTVEDPVEYQ 283 (486)
T ss_pred CCCHHHcCCCHHHHHHHHHHHh--------------cCCCEEEEEcCCCCCHHHHHHHHHhccCCCCCcEEEEcCCeeee
Confidence 4577787766666666666553 2334 78999999999999998887764 334444211 111
Q ss_pred HHHhhc------chHHHHHHHHHHHhcCCeEEEEcCcch
Q 007575 403 ELYVGM------GASRVRDLFARAKKEAPSIIFIDEIDA 435 (597)
Q Consensus 403 ~~~vG~------~e~~vr~lF~~A~~~aP~ILfIDEIDa 435 (597)
-..+++ ......++++.+....|+||++.||-.
T Consensus 284 ~~~~~q~~v~~~~g~~f~~~lr~~LR~dPDvI~vGEiRd 322 (486)
T TIGR02533 284 IEGIGQIQVNPKIGLTFAAGLRAILRQDPDIIMVGEIRD 322 (486)
T ss_pred cCCCceEEEccccCccHHHHHHHHHhcCCCEEEEeCCCC
Confidence 111111 112345667777788999999999843
No 472
>PRK04182 cytidylate kinase; Provisional
Probab=96.36 E-value=0.0031 Score=60.02 Aligned_cols=29 Identities=31% Similarity=0.516 Sum_probs=26.8
Q ss_pred ceEEeCCCCChHHHHHHHHHHhcCCCeee
Q 007575 367 GVLLVGLPGTGKTLLAKAVAGEAEVPFIS 395 (597)
Q Consensus 367 gVLL~GPPGTGKT~LArAIA~el~~pfi~ 395 (597)
.|+|.|+||+|||++|+++|..++.+++.
T Consensus 2 ~I~i~G~~GsGKstia~~la~~lg~~~id 30 (180)
T PRK04182 2 IITISGPPGSGKTTVARLLAEKLGLKHVS 30 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCCcEec
Confidence 37899999999999999999999998875
No 473
>COG2804 PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=96.36 E-value=0.0071 Score=67.34 Aligned_cols=95 Identities=20% Similarity=0.307 Sum_probs=61.7
Q ss_pred CCcccccccCChHHHHHHHHHHHHhcChhHHhhcCCCCCCc-eEEeCCCCChHHHHHHHHHHhcCCCee-eechhhhHHH
Q 007575 327 DTITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRG-VLLVGLPGTGKTLLAKAVAGEAEVPFI-SCSASEFVEL 404 (597)
Q Consensus 327 ~~vtf~dV~G~de~k~~L~eiv~~l~~p~~~~~lg~~~p~g-VLL~GPPGTGKT~LArAIA~el~~pfi-~is~sef~~~ 404 (597)
...+|+++.......+.+.+++. .|.| +|++||.|+|||+...++.++++.+.. .++..|-++.
T Consensus 233 ~~l~l~~Lg~~~~~~~~~~~~~~--------------~p~GliLvTGPTGSGKTTTLY~~L~~ln~~~~nI~TiEDPVE~ 298 (500)
T COG2804 233 VILDLEKLGMSPFQLARLLRLLN--------------RPQGLILVTGPTGSGKTTTLYAALSELNTPERNIITIEDPVEY 298 (500)
T ss_pred ccCCHHHhCCCHHHHHHHHHHHh--------------CCCeEEEEeCCCCCCHHHHHHHHHHHhcCCCceEEEeeCCeee
Confidence 35778888888877777666654 2344 677899999999999999998865544 2233333322
Q ss_pred Hh-hcch--------HHHHHHHHHHHhcCCeEEEEcCcch
Q 007575 405 YV-GMGA--------SRVRDLFARAKKEAPSIIFIDEIDA 435 (597)
Q Consensus 405 ~v-G~~e--------~~vr~lF~~A~~~aP~ILfIDEIDa 435 (597)
.. |... -.....++......|+||++.||-.
T Consensus 299 ~~~gI~Q~qVN~k~gltfa~~LRa~LRqDPDvImVGEIRD 338 (500)
T COG2804 299 QLPGINQVQVNPKIGLTFARALRAILRQDPDVIMVGEIRD 338 (500)
T ss_pred ecCCcceeecccccCCCHHHHHHHHhccCCCeEEEeccCC
Confidence 11 1000 0123455666678999999999954
No 474
>TIGR01448 recD_rel helicase, putative, RecD/TraA family. This model describes a family similar to RecD, the exodeoxyribonuclease V alpha chain of TIGR01447. Members of this family, however, are not found in a context of RecB and RecC and are longer by about 200 amino acids at the amino end. Chlamydia muridarum has both a member of this family and a RecD.
Probab=96.35 E-value=0.019 Score=67.58 Aligned_cols=97 Identities=23% Similarity=0.353 Sum_probs=56.0
Q ss_pred ceEEeCCCCChHHHHHHHHHHhc---C--CCeeeechh----hhHHHHhhcchHHHHHHHHHHH----------hcCCeE
Q 007575 367 GVLLVGLPGTGKTLLAKAVAGEA---E--VPFISCSAS----EFVELYVGMGASRVRDLFARAK----------KEAPSI 427 (597)
Q Consensus 367 gVLL~GPPGTGKT~LArAIA~el---~--~pfi~is~s----ef~~~~vG~~e~~vr~lF~~A~----------~~aP~I 427 (597)
-++|.|+||||||++++++...+ + .+++.+..+ .-+....|..+..+..++.... .....+
T Consensus 340 ~~iitGgpGTGKTt~l~~i~~~~~~~~~~~~v~l~ApTg~AA~~L~e~~g~~a~Tih~lL~~~~~~~~~~~~~~~~~~~l 419 (720)
T TIGR01448 340 VVILTGGPGTGKTTITRAIIELAEELGGLLPVGLAAPTGRAAKRLGEVTGLTASTIHRLLGYGPDTFRHNHLEDPIDCDL 419 (720)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHHcCCCceEEEEeCchHHHHHHHHhcCCccccHHHHhhccCCccchhhhhccccCCE
Confidence 58999999999999999986543 4 455544322 1122222333344444443211 123469
Q ss_pred EEEcCcchhhhhcCCcccccchhHHHHHHHHHHHHhcCCCCCCcEEEEEecCCC
Q 007575 428 IFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATNRS 481 (597)
Q Consensus 428 LfIDEIDaL~~~r~~~~~~~~~~e~eqtLnqLL~emdg~~~~~~VIVIaaTNrp 481 (597)
|+|||+..+.. ..+..|+..+ .....+++++-.+..
T Consensus 420 lIvDEaSMvd~---------------~~~~~Ll~~~---~~~~rlilvGD~~QL 455 (720)
T TIGR01448 420 LIVDESSMMDT---------------WLALSLLAAL---PDHARLLLVGDTDQL 455 (720)
T ss_pred EEEeccccCCH---------------HHHHHHHHhC---CCCCEEEEECccccc
Confidence 99999976631 2345555543 445667777765543
No 475
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=96.35 E-value=0.022 Score=58.67 Aligned_cols=55 Identities=25% Similarity=0.317 Sum_probs=36.7
Q ss_pred HHHHHHHHHhcCCeEEEEcCcchhhhhcCCcccccchhHHHHHHHHHHHHhcCCCCCCcEEEEEecCCCC
Q 007575 413 VRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATNRSD 482 (597)
Q Consensus 413 vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~eqtLnqLL~emdg~~~~~~VIVIaaTNrpd 482 (597)
-|-++.+|....|.++++||--. +.+...+..+.+||.++.. . +..|+..|...+
T Consensus 146 QRV~lARAL~~~p~lllLDEP~~-----------gvD~~~~~~i~~lL~~l~~---e-g~tIl~vtHDL~ 200 (254)
T COG1121 146 QRVLLARALAQNPDLLLLDEPFT-----------GVDVAGQKEIYDLLKELRQ---E-GKTVLMVTHDLG 200 (254)
T ss_pred HHHHHHHHhccCCCEEEecCCcc-----------cCCHHHHHHHHHHHHHHHH---C-CCEEEEEeCCcH
Confidence 35567788888999999999422 2344445666777777752 2 566777776553
No 476
>PRK11176 lipid transporter ATP-binding/permease protein; Provisional
Probab=96.35 E-value=0.016 Score=65.98 Aligned_cols=28 Identities=29% Similarity=0.373 Sum_probs=24.2
Q ss_pred CCCCCceEEeCCCCChHHHHHHHHHHhc
Q 007575 362 ARPPRGVLLVGLPGTGKTLLAKAVAGEA 389 (597)
Q Consensus 362 ~~~p~gVLL~GPPGTGKT~LArAIA~el 389 (597)
.++...+.|+||+|+|||+|++.+++.+
T Consensus 366 i~~G~~~aIvG~sGsGKSTLl~ll~gl~ 393 (582)
T PRK11176 366 IPAGKTVALVGRSGSGKSTIANLLTRFY 393 (582)
T ss_pred eCCCCEEEEECCCCCCHHHHHHHHHhcc
Confidence 3455679999999999999999999865
No 477
>PF13245 AAA_19: Part of AAA domain
Probab=96.33 E-value=0.0044 Score=52.15 Aligned_cols=31 Identities=32% Similarity=0.417 Sum_probs=20.9
Q ss_pred eEEeCCCCChHH-HHHHHHHHhc------CCCeeeech
Q 007575 368 VLLVGLPGTGKT-LLAKAVAGEA------EVPFISCSA 398 (597)
Q Consensus 368 VLL~GPPGTGKT-~LArAIA~el------~~pfi~is~ 398 (597)
+++.|||||||| ++++.++... +..++.+..
T Consensus 13 ~vv~g~pGtGKT~~~~~~i~~l~~~~~~~~~~vlv~a~ 50 (76)
T PF13245_consen 13 FVVQGPPGTGKTTTLAARIAELLAARADPGKRVLVLAP 50 (76)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHHhcCCCCeEEEECC
Confidence 556999999999 6666666554 444555543
No 478
>PRK09302 circadian clock protein KaiC; Reviewed
Probab=96.32 E-value=0.027 Score=63.51 Aligned_cols=107 Identities=24% Similarity=0.205 Sum_probs=61.9
Q ss_pred CCCCCCceEEeCCCCChHHHHHHHHHHhc---CCCeeeechhhhHHHH------hhc----------------------c
Q 007575 361 GARPPRGVLLVGLPGTGKTLLAKAVAGEA---EVPFISCSASEFVELY------VGM----------------------G 409 (597)
Q Consensus 361 g~~~p~gVLL~GPPGTGKT~LArAIA~el---~~pfi~is~sef~~~~------vG~----------------------~ 409 (597)
|......++|+||||+|||+++..++.+. |-+.++++..+-.+.+ .|. .
T Consensus 269 G~~~g~~~li~G~~G~GKT~l~~~~~~~~~~~g~~~~yis~e~~~~~i~~~~~~~g~~~~~~~~~g~l~i~~~~~~~~~~ 348 (509)
T PRK09302 269 GFFRGSIILVSGATGTGKTLLASKFAEAACRRGERCLLFAFEESRAQLIRNARSWGIDLEKMEEKGLLKIICARPESYGL 348 (509)
T ss_pred CCCCCcEEEEEcCCCCCHHHHHHHHHHHHHhCCCcEEEEEecCCHHHHHHHHHHcCCChHHHhhcCCceeecCCcccCCH
Confidence 56666778999999999999999987653 5566665443211110 000 0
Q ss_pred hHHHHHHHHHHHhcCCeEEEEcCcchhhhhcCCcccccchhHHHHHHHHHHHHhcCCCCCCcEEEEEec
Q 007575 410 ASRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGAT 478 (597)
Q Consensus 410 e~~vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~eqtLnqLL~emdg~~~~~~VIVIaaT 478 (597)
...+..+.+......+.+|+||-+..+.... ......+.+..|+..+. ..++.+|.+.
T Consensus 349 ~~~~~~i~~~i~~~~~~~vVIDslt~l~~~~-------~~~~~~~~l~~l~~~~k----~~~~t~l~t~ 406 (509)
T PRK09302 349 EDHLIIIKREIEEFKPSRVAIDPLSALARGG-------SLNEFRQFVIRLTDYLK----SEEITGLFTN 406 (509)
T ss_pred HHHHHHHHHHHHHcCCCEEEEcCHHHHHHhC-------CHHHHHHHHHHHHHHHH----hCCCeEEEEe
Confidence 1223334444455678899999999886432 12233444555555554 2344555443
No 479
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=96.32 E-value=0.018 Score=55.61 Aligned_cols=27 Identities=33% Similarity=0.404 Sum_probs=23.4
Q ss_pred CCCCceEEeCCCCChHHHHHHHHHHhc
Q 007575 363 RPPRGVLLVGLPGTGKTLLAKAVAGEA 389 (597)
Q Consensus 363 ~~p~gVLL~GPPGTGKT~LArAIA~el 389 (597)
.+..-+.|.||+|+|||+|++.+++..
T Consensus 23 ~~G~~~~l~G~nGsGKStLl~~i~G~~ 49 (180)
T cd03214 23 EAGEIVGILGPNGAGKSTLLKTLAGLL 49 (180)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 345568999999999999999999965
No 480
>PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed
Probab=96.32 E-value=0.013 Score=60.06 Aligned_cols=28 Identities=32% Similarity=0.544 Sum_probs=23.7
Q ss_pred CCCCCceEEeCCCCChHHHHHHHHHHhc
Q 007575 362 ARPPRGVLLVGLPGTGKTLLAKAVAGEA 389 (597)
Q Consensus 362 ~~~p~gVLL~GPPGTGKT~LArAIA~el 389 (597)
..+...+.|.||+|+|||+|++.+++..
T Consensus 27 i~~Ge~~~I~G~NGsGKSTLl~~i~Gl~ 54 (251)
T PRK09544 27 LKPGKILTLLGPNGAGKSTLVRVVLGLV 54 (251)
T ss_pred EcCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 3445569999999999999999999864
No 481
>PRK12608 transcription termination factor Rho; Provisional
Probab=96.32 E-value=0.027 Score=61.12 Aligned_cols=23 Identities=35% Similarity=0.517 Sum_probs=20.8
Q ss_pred ceEEeCCCCChHHHHHHHHHHhc
Q 007575 367 GVLLVGLPGTGKTLLAKAVAGEA 389 (597)
Q Consensus 367 gVLL~GPPGTGKT~LArAIA~el 389 (597)
.++|+||||||||+|++.+++.+
T Consensus 135 R~LIvG~pGtGKTTLl~~la~~i 157 (380)
T PRK12608 135 RGLIVAPPRAGKTVLLQQIAAAV 157 (380)
T ss_pred eEEEECCCCCCHHHHHHHHHHHH
Confidence 37999999999999999998865
No 482
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=96.32 E-value=0.009 Score=65.29 Aligned_cols=26 Identities=31% Similarity=0.420 Sum_probs=22.5
Q ss_pred CCceEEeCCCCChHHHHHHHHHHhcC
Q 007575 365 PRGVLLVGLPGTGKTLLAKAVAGEAE 390 (597)
Q Consensus 365 p~gVLL~GPPGTGKT~LArAIA~el~ 390 (597)
..-++|+||||+|||+|++.+++...
T Consensus 168 Gq~~~IvG~~g~GKTtL~~~i~~~I~ 193 (415)
T TIGR00767 168 GQRGLIVAPPKAGKTVLLQKIAQAIT 193 (415)
T ss_pred CCEEEEECCCCCChhHHHHHHHHhhc
Confidence 34499999999999999999998753
No 483
>TIGR03819 heli_sec_ATPase helicase/secretion neighborhood ATPase. Members of this protein family comprise a distinct clade of putative ATPase associated with an integral membrane complex likely to act in pilus formation, secretion, or conjugal transfer. The association of most members with a nearby gene for a DEAH-box helicase suggests a role in conjugal transfer.
Probab=96.31 E-value=0.0043 Score=66.57 Aligned_cols=70 Identities=29% Similarity=0.380 Sum_probs=47.3
Q ss_pred CCceEEeCCCCChHHHHHHHHHHhcCC--Ceeeec-hhhhH-------HHH------hhcchHHHHHHHHHHHhcCCeEE
Q 007575 365 PRGVLLVGLPGTGKTLLAKAVAGEAEV--PFISCS-ASEFV-------ELY------VGMGASRVRDLFARAKKEAPSII 428 (597)
Q Consensus 365 p~gVLL~GPPGTGKT~LArAIA~el~~--pfi~is-~sef~-------~~~------vG~~e~~vr~lF~~A~~~aP~IL 428 (597)
.+++++.|++|+|||++++++.++... ..+.+. ..|+. ... .|.+.-...++++.+....|+.|
T Consensus 178 ~~~ili~G~tGsGKTTll~al~~~i~~~~riv~iEd~~El~~~~~~~~~l~~r~~~~~g~~~~t~~~ll~~aLR~~PD~I 257 (340)
T TIGR03819 178 RLAFLISGGTGSGKTTLLSALLALVAPDERIVLVEDAAELRPDHPHVVRLEARPANVEGAGAVTLTDLVRQALRMRPDRI 257 (340)
T ss_pred CCeEEEECCCCCCHHHHHHHHHccCCCCCcEEEECCcceecCCCCCeeeEEeccccccCcCccCHHHHHHHHhccCCCeE
Confidence 458999999999999999999987532 111111 11111 000 12233456788999999999999
Q ss_pred EEcCcc
Q 007575 429 FIDEID 434 (597)
Q Consensus 429 fIDEID 434 (597)
++.|+-
T Consensus 258 ivGEiR 263 (340)
T TIGR03819 258 VVGEVR 263 (340)
T ss_pred EEeCcC
Confidence 999983
No 484
>TIGR02173 cyt_kin_arch cytidylate kinase, putative. Proteins in this family are believed to be cytidylate kinase. Members of this family are found in the archaea and in spirochaetes, and differ considerably from the common bacterial form of cytidylate kinase described by TIGR00017.
Probab=96.31 E-value=0.0034 Score=59.29 Aligned_cols=29 Identities=38% Similarity=0.629 Sum_probs=26.5
Q ss_pred eEEeCCCCChHHHHHHHHHHhcCCCeeee
Q 007575 368 VLLVGLPGTGKTLLAKAVAGEAEVPFISC 396 (597)
Q Consensus 368 VLL~GPPGTGKT~LArAIA~el~~pfi~i 396 (597)
|.|+|++|+|||++|+.+++.++.+++..
T Consensus 3 I~i~G~~GSGKstia~~la~~lg~~~~~~ 31 (171)
T TIGR02173 3 ITISGPPGSGKTTVAKILAEKLSLKLISA 31 (171)
T ss_pred EEEECCCCCCHHHHHHHHHHHcCCceecH
Confidence 78999999999999999999999997654
No 485
>PRK10436 hypothetical protein; Provisional
Probab=96.30 E-value=0.0098 Score=66.39 Aligned_cols=94 Identities=14% Similarity=0.269 Sum_probs=59.4
Q ss_pred CcccccccCChHHHHHHHHHHHHhcChhHHhhcCCCCCCceEEeCCCCChHHHHHHHHHHhcC---CCeeeechh-hhHH
Q 007575 328 TITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAE---VPFISCSAS-EFVE 403 (597)
Q Consensus 328 ~vtf~dV~G~de~k~~L~eiv~~l~~p~~~~~lg~~~p~gVLL~GPPGTGKT~LArAIA~el~---~pfi~is~s-ef~~ 403 (597)
..+++++.-.++..+.+++++. .+..-+|++||+|+|||++..++..+.+ ..++++.-+ ++.-
T Consensus 194 ~~~L~~LG~~~~~~~~l~~~~~-------------~~~GliLvtGpTGSGKTTtL~a~l~~~~~~~~~i~TiEDPvE~~l 260 (462)
T PRK10436 194 ALDLETLGMTPAQLAQFRQALQ-------------QPQGLILVTGPTGSGKTVTLYSALQTLNTAQINICSVEDPVEIPL 260 (462)
T ss_pred CCCHHHcCcCHHHHHHHHHHHH-------------hcCCeEEEECCCCCChHHHHHHHHHhhCCCCCEEEEecCCccccC
Confidence 4577887766666666666553 1122488999999999999988877764 333333211 1110
Q ss_pred H-----Hhh-cchHHHHHHHHHHHhcCCeEEEEcCcc
Q 007575 404 L-----YVG-MGASRVRDLFARAKKEAPSIIFIDEID 434 (597)
Q Consensus 404 ~-----~vG-~~e~~vr~lF~~A~~~aP~ILfIDEID 434 (597)
. .++ ........+++.+....|+||+|.||-
T Consensus 261 ~gi~Q~~v~~~~g~~f~~~lr~~LR~dPDvI~vGEIR 297 (462)
T PRK10436 261 AGINQTQIHPKAGLTFQRVLRALLRQDPDVIMVGEIR 297 (462)
T ss_pred CCcceEeeCCccCcCHHHHHHHHhcCCCCEEEECCCC
Confidence 0 011 112345677788888999999999984
No 486
>PRK13541 cytochrome c biogenesis protein CcmA; Provisional
Probab=96.29 E-value=0.046 Score=53.41 Aligned_cols=27 Identities=30% Similarity=0.434 Sum_probs=23.2
Q ss_pred CCCCceEEeCCCCChHHHHHHHHHHhc
Q 007575 363 RPPRGVLLVGLPGTGKTLLAKAVAGEA 389 (597)
Q Consensus 363 ~~p~gVLL~GPPGTGKT~LArAIA~el 389 (597)
.+..-+.|.||+|+|||+|++++++..
T Consensus 24 ~~Ge~~~l~G~nGsGKSTLl~~l~G~~ 50 (195)
T PRK13541 24 LPSAITYIKGANGCGKSSLLRMIAGIM 50 (195)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhcCC
Confidence 345568999999999999999999864
No 487
>COG2874 FlaH Predicted ATPases involved in biogenesis of archaeal flagella [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=96.28 E-value=0.022 Score=57.16 Aligned_cols=122 Identities=24% Similarity=0.249 Sum_probs=72.5
Q ss_pred HHhhcCC--CCCCceEEeCCCCChHHHHHHHHHHhc---CCCeeeechh----hhHHH----------------------
Q 007575 356 KYIRLGA--RPPRGVLLVGLPGTGKTLLAKAVAGEA---EVPFISCSAS----EFVEL---------------------- 404 (597)
Q Consensus 356 ~~~~lg~--~~p~gVLL~GPPGTGKT~LArAIA~el---~~pfi~is~s----ef~~~---------------------- 404 (597)
.-.++|. +.+.-+|+.|+.|||||.|.+.++.-+ +....+++.. +|...
T Consensus 17 lDkrLGGGiP~GsL~lIEGd~~tGKSvLsqr~~YG~L~~g~~v~yvsTe~T~refi~qm~sl~ydv~~~~l~G~l~~~~~ 96 (235)
T COG2874 17 LDKRLGGGIPVGSLILIEGDNGTGKSVLSQRFAYGFLMNGYRVTYVSTELTVREFIKQMESLSYDVSDFLLSGRLLFFPV 96 (235)
T ss_pred HHhhccCCCccCeEEEEECCCCccHHHHHHHHHHHHHhCCceEEEEEechhHHHHHHHHHhcCCCchHHHhcceeEEEEe
Confidence 3344554 444457889999999999999887521 2222222111 11110
Q ss_pred -------HhhcchHHHHHHHHHHHhcCCeEEEEcCcchhhhhcCCcccccchhHHHHHHHHHHHHhcCCCCCCcEEEEEe
Q 007575 405 -------YVGMGASRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGA 477 (597)
Q Consensus 405 -------~vG~~e~~vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~eqtLnqLL~emdg~~~~~~VIVIaa 477 (597)
-.....+.+..+.+..+.....||+||-+..+.... .++.++++++.+..+.+..++|++
T Consensus 97 ~~~~~~~~~~~~~~~L~~l~~~~k~~~~dViIIDSls~~~~~~-----------~~~~vl~fm~~~r~l~d~gKvIil-- 163 (235)
T COG2874 97 NLEPVNWGRRSARKLLDLLLEFIKRWEKDVIIIDSLSAFATYD-----------SEDAVLNFMTFLRKLSDLGKVIIL-- 163 (235)
T ss_pred cccccccChHHHHHHHHHHHhhHHhhcCCEEEEecccHHhhcc-----------cHHHHHHHHHHHHHHHhCCCEEEE--
Confidence 011223345556666666667799999998886432 134456666666666666666664
Q ss_pred cCCCCCCChhhhC
Q 007575 478 TNRSDVLDPALRR 490 (597)
Q Consensus 478 TNrpd~LD~aLlR 490 (597)
|-+|+.++++.+-
T Consensus 164 Tvhp~~l~e~~~~ 176 (235)
T COG2874 164 TVHPSALDEDVLT 176 (235)
T ss_pred EeChhhcCHHHHH
Confidence 4467888888765
No 488
>COG1134 TagH ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=96.27 E-value=0.03 Score=57.17 Aligned_cols=25 Identities=36% Similarity=0.477 Sum_probs=21.7
Q ss_pred CCceEEeCCCCChHHHHHHHHHHhc
Q 007575 365 PRGVLLVGLPGTGKTLLAKAVAGEA 389 (597)
Q Consensus 365 p~gVLL~GPPGTGKT~LArAIA~el 389 (597)
...+=|.|++|+|||+|.|.||+-.
T Consensus 53 Ge~vGiiG~NGaGKSTLlkliaGi~ 77 (249)
T COG1134 53 GERVGIIGHNGAGKSTLLKLIAGIY 77 (249)
T ss_pred CCEEEEECCCCCcHHHHHHHHhCcc
Confidence 3458899999999999999999854
No 489
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=96.26 E-value=0.034 Score=65.18 Aligned_cols=155 Identities=23% Similarity=0.265 Sum_probs=92.8
Q ss_pred CCceEEeCCCCChHHHHHHHHHHh----cCCCeeeechhhh-----HHH-------Hh---hc-------------chHH
Q 007575 365 PRGVLLVGLPGTGKTLLAKAVAGE----AEVPFISCSASEF-----VEL-------YV---GM-------------GASR 412 (597)
Q Consensus 365 p~gVLL~GPPGTGKT~LArAIA~e----l~~pfi~is~sef-----~~~-------~v---G~-------------~e~~ 412 (597)
-+-+||+.|.|.|||+++-..+.. .++-+++++.++- .+. ++ |. ....
T Consensus 37 ~RL~li~APAGfGKttl~aq~~~~~~~~~~v~Wlslde~dndp~rF~~yLi~al~~~~p~~~~~a~~l~q~~~~~~l~~l 116 (894)
T COG2909 37 YRLILISAPAGFGKTTLLAQWRELAADGAAVAWLSLDESDNDPARFLSYLIAALQQATPTLGDEAQTLLQKHQYVSLESL 116 (894)
T ss_pred ceEEEEeCCCCCcHHHHHHHHHHhcCcccceeEeecCCccCCHHHHHHHHHHHHHHhCccccHHHHHHHHhcccccHHHH
Confidence 346999999999999999998753 2566676654432 111 11 00 1113
Q ss_pred HHHHHHHH-HhcCCeEEEEcCcchhhhhcCCcccccchhHHHHHHHHHHHHhcCCCCCCcEEEEEec-CCCCCCChhhhC
Q 007575 413 VRDLFARA-KKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGAT-NRSDVLDPALRR 490 (597)
Q Consensus 413 vr~lF~~A-~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~eqtLnqLL~emdg~~~~~~VIVIaaT-Nrpd~LD~aLlR 490 (597)
+..+|.+. ....|+.||||+.+.+- +......++.|+..+ +.++.+|.+| ++|..--..+ |
T Consensus 117 ~~~L~~Ela~~~~pl~LVlDDyHli~-----------~~~l~~~l~fLl~~~-----P~~l~lvv~SR~rP~l~la~l-R 179 (894)
T COG2909 117 LSSLLNELASYEGPLYLVLDDYHLIS-----------DPALHEALRFLLKHA-----PENLTLVVTSRSRPQLGLARL-R 179 (894)
T ss_pred HHHHHHHHHhhcCceEEEeccccccC-----------cccHHHHHHHHHHhC-----CCCeEEEEEeccCCCCcccce-e
Confidence 34555543 44679999999998874 333455667777654 3556666666 4443221111 1
Q ss_pred CCCcceEEEec----CCCHHHHHHHHHHHHhcCCCCCCCCCCHHHHHHhCCCCCHH
Q 007575 491 PGRFDRVVMVE----TPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTTGFTGA 542 (597)
Q Consensus 491 pgRFd~~I~v~----~Pd~~eR~eILk~~l~~~~~~l~~dvdl~~LA~~t~G~Sga 542 (597)
-=|..++++ ..|.+|-.++++.+. +.+++. .+++.|-..++|+..+
T Consensus 180 --lr~~llEi~~~~Lrf~~eE~~~fl~~~~---~l~Ld~-~~~~~L~~~teGW~~a 229 (894)
T COG2909 180 --LRDELLEIGSEELRFDTEEAAAFLNDRG---SLPLDA-ADLKALYDRTEGWAAA 229 (894)
T ss_pred --ehhhHHhcChHhhcCChHHHHHHHHHcC---CCCCCh-HHHHHHHhhcccHHHH
Confidence 002223333 246788888888764 345544 3789999999997553
No 490
>PRK00889 adenylylsulfate kinase; Provisional
Probab=96.25 E-value=0.015 Score=55.82 Aligned_cols=38 Identities=29% Similarity=0.379 Sum_probs=29.5
Q ss_pred CCceEEeCCCCChHHHHHHHHHHhc---CCCeeeechhhhH
Q 007575 365 PRGVLLVGLPGTGKTLLAKAVAGEA---EVPFISCSASEFV 402 (597)
Q Consensus 365 p~gVLL~GPPGTGKT~LArAIA~el---~~pfi~is~sef~ 402 (597)
+.-+.|.|+||+|||++|++++..+ +..+..++...+.
T Consensus 4 g~~i~~~G~~GsGKST~a~~la~~l~~~g~~v~~id~D~~~ 44 (175)
T PRK00889 4 GVTVWFTGLSGAGKTTIARALAEKLREAGYPVEVLDGDAVR 44 (175)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEcCccHH
Confidence 4568899999999999999999886 4445666665543
No 491
>PRK13539 cytochrome c biogenesis protein CcmA; Provisional
Probab=96.24 E-value=0.036 Score=54.75 Aligned_cols=27 Identities=33% Similarity=0.513 Sum_probs=23.0
Q ss_pred CCCCceEEeCCCCChHHHHHHHHHHhc
Q 007575 363 RPPRGVLLVGLPGTGKTLLAKAVAGEA 389 (597)
Q Consensus 363 ~~p~gVLL~GPPGTGKT~LArAIA~el 389 (597)
.+...+.|.||+|+|||+|++.+++..
T Consensus 26 ~~Ge~~~i~G~nGsGKSTLl~~l~G~~ 52 (207)
T PRK13539 26 AAGEALVLTGPNGSGKTTLLRLIAGLL 52 (207)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 345568899999999999999999864
No 492
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.24 E-value=0.013 Score=56.54 Aligned_cols=26 Identities=35% Similarity=0.523 Sum_probs=22.4
Q ss_pred CCCceEEeCCCCChHHHHHHHHHHhc
Q 007575 364 PPRGVLLVGLPGTGKTLLAKAVAGEA 389 (597)
Q Consensus 364 ~p~gVLL~GPPGTGKT~LArAIA~el 389 (597)
+...+.|.||+|+|||+|++++++..
T Consensus 25 ~G~~~~i~G~nGsGKSTLl~~l~G~~ 50 (178)
T cd03229 25 AGEIVALLGPSGSGKSTLLRCIAGLE 50 (178)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 44568899999999999999999864
No 493
>PF10443 RNA12: RNA12 protein; InterPro: IPR018850 Mitochondrial escape protein 2 (also known as RNA12) plays a role in maintaining the mitochondrial genome and in controlling mtDNA escape [, ]. It is also involved in the regulation of mtDNA nucleotide structure and number []. Additionally, this protein have a dispensable role in the early maturation of pre-rRNA [].
Probab=96.22 E-value=0.16 Score=56.00 Aligned_cols=35 Identities=14% Similarity=0.237 Sum_probs=26.4
Q ss_pred CCCChhhhCCCCcceEEEecCCCHHHHHHHHHHHHhc
Q 007575 482 DVLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSK 518 (597)
Q Consensus 482 d~LD~aLlRpgRFd~~I~v~~Pd~~eR~eILk~~l~~ 518 (597)
..|..+| |.|.-+.|.+.-.+.+.-+.++..++..
T Consensus 197 k~LskaL--Pn~vf~tI~L~Das~~~Ak~yV~~~L~~ 231 (431)
T PF10443_consen 197 KPLSKAL--PNRVFKTISLSDASPESAKQYVLSQLDE 231 (431)
T ss_pred hhHHHhC--CCCceeEEeecCCCHHHHHHHHHHHhcc
Confidence 4567777 4476678999888888888888887754
No 494
>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP. This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.
Probab=96.20 E-value=0.051 Score=52.30 Aligned_cols=22 Identities=32% Similarity=0.240 Sum_probs=19.0
Q ss_pred eEEeCCCCChHHHHHHHHHHhc
Q 007575 368 VLLVGLPGTGKTLLAKAVAGEA 389 (597)
Q Consensus 368 VLL~GPPGTGKT~LArAIA~el 389 (597)
|.+|+++|+|||++|-++|-++
T Consensus 5 i~vy~g~G~Gkt~~a~g~~~ra 26 (159)
T cd00561 5 IQVYTGNGKGKTTAALGLALRA 26 (159)
T ss_pred EEEECCCCCCHHHHHHHHHHHH
Confidence 6789999999999999987654
No 495
>PF13479 AAA_24: AAA domain
Probab=96.19 E-value=0.0052 Score=61.39 Aligned_cols=68 Identities=22% Similarity=0.329 Sum_probs=38.5
Q ss_pred CCceEEeCCCCChHHHHHHHHHHhcCCCee-eechhhh-HHHH------hhcchHHHHHHHHHHH--hcCCeEEEEcCcc
Q 007575 365 PRGVLLVGLPGTGKTLLAKAVAGEAEVPFI-SCSASEF-VELY------VGMGASRVRDLFARAK--KEAPSIIFIDEID 434 (597)
Q Consensus 365 p~gVLL~GPPGTGKT~LArAIA~el~~pfi-~is~sef-~~~~------vG~~e~~vr~lF~~A~--~~aP~ILfIDEID 434 (597)
+..++||||||+|||++|..+ +.|++ .+..... ...+ .=.+-..+.+.+..+. ...-.+|+||.++
T Consensus 3 ~~~~lIyG~~G~GKTt~a~~~----~k~l~id~E~g~~~~~~~~~~~~i~i~s~~~~~~~~~~l~~~~~~y~tiVIDsis 78 (213)
T PF13479_consen 3 PIKILIYGPPGSGKTTLAASL----PKPLFIDTENGSDSLKFLDDGDVIPITSWEDFLEALDELEEDEADYDTIVIDSIS 78 (213)
T ss_pred ceEEEEECCCCCCHHHHHHhC----CCeEEEEeCCCccchhhhcCCCeeCcCCHHHHHHHHHHHHhccCCCCEEEEECHH
Confidence 446999999999999999988 33322 2221100 0000 0013344455554432 2334599999988
Q ss_pred hh
Q 007575 435 AV 436 (597)
Q Consensus 435 aL 436 (597)
.+
T Consensus 79 ~~ 80 (213)
T PF13479_consen 79 WL 80 (213)
T ss_pred HH
Confidence 76
No 496
>COG5245 DYN1 Dynein, heavy chain [Cytoskeleton]
Probab=96.18 E-value=0.028 Score=68.87 Aligned_cols=176 Identities=20% Similarity=0.228 Sum_probs=97.2
Q ss_pred CCCCceEEeCCCCChHHHH-HHHHHHhcCCCeeeechhhhHHHHhhcchHHHHHHHHHHHhcC---------C------e
Q 007575 363 RPPRGVLLVGLPGTGKTLL-AKAVAGEAEVPFISCSASEFVELYVGMGASRVRDLFARAKKEA---------P------S 426 (597)
Q Consensus 363 ~~p~gVLL~GPPGTGKT~L-ArAIA~el~~pfi~is~sef~~~~vG~~e~~vr~lF~~A~~~a---------P------~ 426 (597)
...++++++||||+|||+| .-++-.+.-..++.++-+.- ..++..++ ++++-...- | -
T Consensus 1492 nt~R~~i~cGppGSgK~mlM~~sLrs~~~~ev~~~Nfs~~-----t~T~s~ls-~Ler~t~yy~~tg~~~l~PK~~vK~l 1565 (3164)
T COG5245 1492 NTLRSYIYCGPPGSGKEMLMCPSLRSELITEVKYFNFSTC-----TMTPSKLS-VLERETEYYPNTGVVRLYPKPVVKDL 1565 (3164)
T ss_pred hccceEEEECCCCCccchhcchhhhhhhheeeeEEeeccc-----cCCHHHHH-HHHhhceeeccCCeEEEccCcchhhe
Confidence 3457899999999999986 45777777777777765421 11222222 222222111 1 2
Q ss_pred EEEEcCcchhhhhcCCcccccchhHHHHHHHHHHHHhcCCCC--------CCcEEEEEecCCCCCC-----ChhhhCCCC
Q 007575 427 IIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDS--------NSAVIVLGATNRSDVL-----DPALRRPGR 493 (597)
Q Consensus 427 ILfIDEIDaL~~~r~~~~~~~~~~e~eqtLnqLL~emdg~~~--------~~~VIVIaaTNrpd~L-----D~aLlRpgR 493 (597)
|||.|||. |...+.-. ..+. --.+.+|+ +-+||-. -.+++|.+++|.+.+. ...+.| |
T Consensus 1566 VLFcDeIn-Lp~~~~y~---~~~v--I~FlR~l~-e~QGfw~s~~~~wvTI~~i~l~Gacnp~td~gRv~~~eRf~r--~ 1636 (3164)
T COG5245 1566 VLFCDEIN-LPYGFEYY---PPTV--IVFLRPLV-ERQGFWSSIAVSWVTICGIILYGACNPGTDEGRVKYYERFIR--K 1636 (3164)
T ss_pred EEEeeccC-CccccccC---CCce--EEeeHHHH-HhcccccchhhhHhhhcceEEEccCCCCCCcccCccHHHHhc--C
Confidence 99999998 54433210 0000 00011211 2233422 2579999999998654 344444 2
Q ss_pred cceEEEecCCCHHHHHHHHHHHHhcCCCCCCCCC------------C--------HHHHHHhCCCCCHHHHHHHHHHHHH
Q 007575 494 FDRVVMVETPDKIGREAILKVHVSKKELPLAKDI------------D--------LGDIASMTTGFTGADLANLVNEAAL 553 (597)
Q Consensus 494 Fd~~I~v~~Pd~~eR~eILk~~l~~~~~~l~~dv------------d--------l~~LA~~t~G~SgaDL~~Lv~eAal 553 (597)
...+++..|.......|...++...- .+.++. . ...-.+...||+|+||...++.-.-
T Consensus 1637 -~v~vf~~ype~~SL~~Iyea~l~~s~-l~~~ef~~~se~~~~aSv~ly~~~k~~~k~~lq~~y~y~pReLtR~lr~i~~ 1714 (3164)
T COG5245 1637 -PVFVFCCYPELASLRNIYEAVLMGSY-LCFDEFNRLSEETMSASVELYLSSKDKTKFFLQMNYGYKPRELTRSLRAIFG 1714 (3164)
T ss_pred -ceEEEecCcchhhHHHHHHHHHHHHH-HhhHHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccccChHHHHHHHHHHHh
Confidence 24578889998888888776665321 111110 0 0011122357999999998885544
Q ss_pred HH
Q 007575 554 LA 555 (597)
Q Consensus 554 ~A 555 (597)
.|
T Consensus 1715 ya 1716 (3164)
T COG5245 1715 YA 1716 (3164)
T ss_pred HH
Confidence 44
No 497
>TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein. Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif
Probab=96.18 E-value=0.022 Score=66.47 Aligned_cols=28 Identities=32% Similarity=0.472 Sum_probs=24.3
Q ss_pred CCCCCceEEeCCCCChHHHHHHHHHHhc
Q 007575 362 ARPPRGVLLVGLPGTGKTLLAKAVAGEA 389 (597)
Q Consensus 362 ~~~p~gVLL~GPPGTGKT~LArAIA~el 389 (597)
.++...+.|+||+|+|||+|++.+++.+
T Consensus 476 i~~Ge~vaIvG~sGsGKSTLlklL~gl~ 503 (686)
T TIGR03797 476 IEPGEFVAIVGPSGSGKSTLLRLLLGFE 503 (686)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 4556679999999999999999999864
No 498
>cd03287 ABC_MSH3_euk MutS3 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=96.18 E-value=0.026 Score=57.11 Aligned_cols=23 Identities=22% Similarity=0.144 Sum_probs=20.6
Q ss_pred CCceEEeCCCCChHHHHHHHHHH
Q 007575 365 PRGVLLVGLPGTGKTLLAKAVAG 387 (597)
Q Consensus 365 p~gVLL~GPPGTGKT~LArAIA~ 387 (597)
...++|.||.|+|||++.+.++.
T Consensus 31 g~~~~itG~N~~GKStll~~i~~ 53 (222)
T cd03287 31 GYCQIITGPNMGGKSSYIRQVAL 53 (222)
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 34689999999999999999987
No 499
>TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein. This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin.
Probab=96.16 E-value=0.019 Score=67.25 Aligned_cols=28 Identities=46% Similarity=0.616 Sum_probs=24.1
Q ss_pred CCCCCceEEeCCCCChHHHHHHHHHHhc
Q 007575 362 ARPPRGVLLVGLPGTGKTLLAKAVAGEA 389 (597)
Q Consensus 362 ~~~p~gVLL~GPPGTGKT~LArAIA~el 389 (597)
.++...+.|+||+|+|||+|++.+++.+
T Consensus 502 i~~Ge~vaIvG~sGsGKSTLlklL~gl~ 529 (710)
T TIGR03796 502 LQPGQRVALVGGSGSGKSTIAKLVAGLY 529 (710)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 4456679999999999999999999865
No 500
>KOG3928 consensus Mitochondrial ribosome small subunit component, mediator of apoptosis DAP3 [Translation, ribosomal structure and biogenesis]
Probab=96.16 E-value=0.19 Score=54.84 Aligned_cols=51 Identities=12% Similarity=0.062 Sum_probs=32.7
Q ss_pred EEEecCCCHHHHHHHHHHHHhcCCCC--CCCCCCHHHHHHhCCCCCHHHHHHHH
Q 007575 497 VVMVETPDKIGREAILKVHVSKKELP--LAKDIDLGDIASMTTGFTGADLANLV 548 (597)
Q Consensus 497 ~I~v~~Pd~~eR~eILk~~l~~~~~~--l~~dvdl~~LA~~t~G~SgaDL~~Lv 548 (597)
.|+++.++.+|-.+++..+++..-+. ...+...+++--+. +.+|+.++.+|
T Consensus 405 pi~v~nYt~~E~~~~i~YYl~~nwl~kkv~~Ee~~kql~fLS-ngNP~l~~~lc 457 (461)
T KOG3928|consen 405 PIEVENYTLDEFEALIDYYLQSNWLLKKVPGEENIKQLYFLS-NGNPSLMERLC 457 (461)
T ss_pred ccccCCCCHHHHHHHHHHHHHhhHHHhhcCcccchhhhhhhc-CCCHHHHHHHH
Confidence 47888999999999999998753211 11122344444444 56777776665
Done!