Query 007575
Match_columns 597
No_of_seqs 550 out of 3269
Neff 6.1
Searched_HMMs 29240
Date Mon Mar 25 05:11:40 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007575.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/007575hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4b4t_J 26S protease regulatory 100.0 9.8E-54 3.4E-58 458.5 30.2 260 321-583 137-397 (405)
2 4b4t_I 26S protease regulatory 100.0 2.4E-52 8.2E-57 449.6 26.9 259 322-583 172-431 (437)
3 4b4t_H 26S protease regulatory 100.0 4.6E-52 1.6E-56 451.0 27.7 259 323-584 200-459 (467)
4 4b4t_M 26S protease regulatory 100.0 2.5E-51 8.4E-56 444.8 26.2 255 322-579 171-426 (434)
5 4b4t_L 26S protease subunit RP 100.0 6.2E-51 2.1E-55 442.0 27.9 255 322-579 171-426 (437)
6 4b4t_K 26S protease regulatory 100.0 3.5E-50 1.2E-54 435.4 27.6 254 323-579 163-418 (428)
7 3cf2_A TER ATPase, transitiona 100.0 1.9E-51 6.4E-56 473.8 13.2 335 242-579 342-747 (806)
8 2ce7_A Cell division protein F 100.0 1.2E-42 4E-47 381.5 27.1 263 326-591 10-272 (476)
9 3cf2_A TER ATPase, transitiona 100.0 2.9E-43 9.9E-48 405.8 19.6 251 325-581 197-465 (806)
10 2dhr_A FTSH; AAA+ protein, hex 100.0 1.3E-40 4.3E-45 367.3 23.3 267 321-590 20-286 (499)
11 1lv7_A FTSH; alpha/beta domain 100.0 3.5E-39 1.2E-43 323.8 27.5 253 324-579 4-256 (257)
12 2qz4_A Paraplegin; AAA+, SPG7, 100.0 3.2E-40 1.1E-44 329.7 18.3 261 327-587 1-261 (262)
13 2x8a_A Nuclear valosin-contain 100.0 7E-40 2.4E-44 335.4 20.0 253 325-581 3-270 (274)
14 3cf0_A Transitional endoplasmi 100.0 9E-39 3.1E-43 330.1 25.2 253 323-578 6-284 (301)
15 1xwi_A SKD1 protein; VPS4B, AA 100.0 2.2E-37 7.4E-42 323.5 23.6 227 324-558 4-233 (322)
16 3h4m_A Proteasome-activating n 100.0 1E-36 3.5E-41 309.2 27.4 253 324-579 9-262 (285)
17 1ixz_A ATP-dependent metallopr 100.0 4.8E-36 1.6E-40 300.5 27.8 247 323-572 7-253 (254)
18 3eie_A Vacuolar protein sortin 100.0 3.1E-37 1.1E-41 321.3 19.4 249 323-579 9-302 (322)
19 2qp9_X Vacuolar protein sortin 100.0 3.7E-36 1.3E-40 318.2 22.9 248 324-579 43-335 (355)
20 2r62_A Cell division protease 100.0 2.3E-38 7.8E-43 319.0 4.5 257 325-583 4-261 (268)
21 1iy2_A ATP-dependent metallopr 100.0 1.7E-34 5.9E-39 293.8 29.7 246 324-572 32-277 (278)
22 3hu3_A Transitional endoplasmi 100.0 3.8E-35 1.3E-39 323.3 25.2 250 327-582 199-466 (489)
23 2zan_A Vacuolar protein sortin 100.0 9.2E-35 3.2E-39 316.4 20.6 228 323-558 125-355 (444)
24 1ypw_A Transitional endoplasmi 100.0 2.3E-37 7.8E-42 359.4 -3.1 316 241-559 341-702 (806)
25 3d8b_A Fidgetin-like protein 1 100.0 5.3E-33 1.8E-37 293.9 23.5 247 326-580 78-339 (357)
26 3b9p_A CG5977-PA, isoform A; A 100.0 1.9E-33 6.6E-38 287.2 18.0 247 324-578 13-275 (297)
27 3vfd_A Spastin; ATPase, microt 100.0 3.6E-32 1.2E-36 290.1 21.9 247 324-578 107-368 (389)
28 1ypw_A Transitional endoplasmi 100.0 1.2E-28 4E-33 286.4 24.0 249 325-579 197-463 (806)
29 3t15_A Ribulose bisphosphate c 99.9 2.6E-28 9E-33 251.4 9.6 176 361-546 32-222 (293)
30 2c9o_A RUVB-like 1; hexameric 99.9 2.2E-26 7.6E-31 250.8 6.3 171 326-504 31-225 (456)
31 3uk6_A RUVB-like 2; hexameric 99.9 7E-24 2.4E-28 222.2 18.5 225 326-578 38-333 (368)
32 3syl_A Protein CBBX; photosynt 99.9 5.1E-24 1.7E-28 218.0 13.5 223 333-569 32-280 (309)
33 3pfi_A Holliday junction ATP-d 99.9 1.5E-21 5.1E-26 202.6 22.8 216 326-575 23-254 (338)
34 1hqc_A RUVB; extended AAA-ATPa 99.9 4.6E-21 1.6E-25 197.0 18.6 216 327-575 7-238 (324)
35 1ofh_A ATP-dependent HSL prote 99.9 1.3E-21 4.4E-26 199.1 13.4 239 332-576 15-300 (310)
36 1d2n_A N-ethylmaleimide-sensit 99.8 1.8E-20 6.1E-25 189.4 14.4 228 329-575 30-264 (272)
37 2v1u_A Cell division control p 99.8 7.5E-20 2.6E-24 190.9 19.1 245 328-594 15-296 (387)
38 3hws_A ATP-dependent CLP prote 99.8 3.4E-20 1.2E-24 195.5 14.8 235 333-571 16-345 (363)
39 2chg_A Replication factor C sm 99.8 5.6E-19 1.9E-23 168.6 20.4 203 326-573 11-224 (226)
40 2z4s_A Chromosomal replication 99.8 1E-19 3.5E-24 197.7 17.0 224 326-576 99-333 (440)
41 3m6a_A ATP-dependent protease 99.8 9.6E-21 3.3E-25 211.0 9.0 229 328-578 77-344 (543)
42 1g41_A Heat shock protein HSLU 99.8 6.7E-21 2.3E-25 207.0 5.4 169 332-513 15-189 (444)
43 2qby_B CDC6 homolog 3, cell di 99.8 7E-19 2.4E-23 184.4 19.7 235 329-594 17-290 (384)
44 1l8q_A Chromosomal replication 99.8 3.9E-19 1.3E-23 184.0 17.3 220 327-576 6-241 (324)
45 1g8p_A Magnesium-chelatase 38 99.8 5.4E-19 1.8E-23 183.3 17.1 223 325-579 17-326 (350)
46 3pvs_A Replication-associated 99.8 4.2E-19 1.4E-23 193.5 16.9 207 326-575 20-244 (447)
47 3bos_A Putative DNA replicatio 99.8 7.9E-19 2.7E-23 171.0 15.6 207 327-573 23-241 (242)
48 2r44_A Uncharacterized protein 99.8 8.9E-19 3E-23 181.6 16.6 215 331-579 26-301 (331)
49 1njg_A DNA polymerase III subu 99.8 2.7E-18 9.2E-23 165.4 18.1 209 327-572 18-248 (250)
50 2qby_A CDC6 homolog 1, cell di 99.8 2.7E-18 9.2E-23 178.7 18.9 244 327-594 15-292 (386)
51 3u61_B DNA polymerase accessor 99.8 8.2E-19 2.8E-23 181.2 13.6 204 324-573 18-235 (324)
52 1sxj_A Activator 1 95 kDa subu 99.8 1.3E-18 4.5E-23 192.4 15.5 224 325-573 32-272 (516)
53 1in4_A RUVB, holliday junction 99.8 2E-17 6.8E-22 173.0 22.7 215 328-576 21-251 (334)
54 1um8_A ATP-dependent CLP prote 99.8 2.6E-18 9E-23 181.7 13.4 237 333-573 22-363 (376)
55 1sxj_D Activator 1 41 kDa subu 99.8 9.8E-18 3.3E-22 173.7 17.2 210 324-573 29-261 (353)
56 1r6b_X CLPA protein; AAA+, N-t 99.7 6.8E-18 2.3E-22 194.3 16.4 224 328-577 182-435 (758)
57 1jbk_A CLPB protein; beta barr 99.7 4.5E-18 1.5E-22 158.6 9.8 159 328-512 18-194 (195)
58 2chq_A Replication factor C sm 99.7 1.8E-17 6.3E-22 168.7 15.0 202 325-571 10-222 (319)
59 4fcw_A Chaperone protein CLPB; 99.7 1.1E-17 3.6E-22 170.9 12.6 204 332-556 17-279 (311)
60 3pxg_A Negative regulator of g 99.7 2.3E-17 7.8E-22 180.5 16.1 206 327-574 175-405 (468)
61 1fnn_A CDC6P, cell division co 99.7 7E-17 2.4E-21 169.0 18.5 225 328-578 13-277 (389)
62 1sxj_B Activator 1 37 kDa subu 99.7 1.1E-16 3.8E-21 163.3 18.7 203 326-573 15-229 (323)
63 1jr3_A DNA polymerase III subu 99.7 1.7E-16 5.8E-21 165.6 20.2 208 327-571 11-240 (373)
64 3te6_A Regulatory protein SIR3 99.7 1.5E-17 5.3E-22 173.7 9.4 217 334-577 22-317 (318)
65 1qvr_A CLPB protein; coiled co 99.7 7.3E-17 2.5E-21 188.5 14.8 204 328-558 166-395 (854)
66 3pxi_A Negative regulator of g 99.7 7.3E-17 2.5E-21 186.0 14.6 198 332-555 491-724 (758)
67 1iqp_A RFCS; clamp loader, ext 99.7 4.4E-16 1.5E-20 159.0 17.8 189 325-553 18-217 (327)
68 3pxi_A Negative regulator of g 99.7 5.2E-16 1.8E-20 178.9 19.4 190 327-558 175-388 (758)
69 2bjv_A PSP operon transcriptio 99.7 2E-16 6.8E-21 158.9 13.1 206 329-568 3-250 (265)
70 1r6b_X CLPA protein; AAA+, N-t 99.7 1.6E-16 5.4E-21 183.0 13.4 196 332-554 458-714 (758)
71 2p65_A Hypothetical protein PF 99.7 1.6E-16 5.6E-21 148.2 9.8 152 328-504 18-187 (187)
72 3nbx_X ATPase RAVA; AAA+ ATPas 99.7 1.1E-16 3.9E-21 176.6 8.9 209 333-576 23-286 (500)
73 1sxj_C Activator 1 40 kDa subu 99.6 2.2E-15 7.5E-20 157.2 15.9 208 324-571 17-235 (340)
74 1ojl_A Transcriptional regulat 99.6 3.1E-16 1.1E-20 162.3 9.2 204 332-570 2-247 (304)
75 1sxj_E Activator 1 40 kDa subu 99.6 4E-15 1.4E-19 154.7 17.0 193 326-555 8-244 (354)
76 3f9v_A Minichromosome maintena 99.6 2.4E-16 8E-21 177.5 6.6 222 332-577 295-589 (595)
77 1qvr_A CLPB protein; coiled co 99.6 1.6E-15 5.6E-20 177.1 10.9 203 331-556 557-820 (854)
78 1w5s_A Origin recognition comp 99.6 3.8E-14 1.3E-18 149.5 18.4 229 329-576 19-294 (412)
79 3n70_A Transport activator; si 99.5 2.5E-14 8.5E-19 131.7 6.1 112 333-481 2-116 (145)
80 3k1j_A LON protease, ATP-depen 99.5 1.5E-13 5E-18 154.8 13.3 218 325-574 34-374 (604)
81 3co5_A Putative two-component 99.5 2.1E-14 7.3E-19 131.9 4.0 112 333-481 5-116 (143)
82 3cmw_A Protein RECA, recombina 99.5 3.1E-14 1.1E-18 174.6 6.4 156 325-481 1013-1218(1706)
83 1a5t_A Delta prime, HOLB; zinc 99.4 1.8E-12 6.3E-17 135.3 17.0 163 362-551 21-208 (334)
84 3vlf_B 26S protease regulatory 99.3 1.8E-12 6.2E-17 110.5 8.7 83 504-588 2-84 (88)
85 3kw6_A 26S protease regulatory 99.3 6.5E-12 2.2E-16 104.3 9.5 76 501-578 1-76 (78)
86 2gno_A DNA polymerase III, gam 99.3 1.5E-11 5.1E-16 127.6 14.5 142 336-516 1-152 (305)
87 2krk_A 26S protease regulatory 99.3 4.8E-12 1.6E-16 107.6 8.7 77 500-578 8-84 (86)
88 1ny5_A Transcriptional regulat 99.3 7.7E-12 2.6E-16 133.5 9.6 207 331-572 136-384 (387)
89 4akg_A Glutathione S-transfera 99.2 9.4E-11 3.2E-15 149.6 16.2 172 365-553 1267-1487(2695)
90 3ec2_A DNA replication protein 99.2 7.3E-11 2.5E-15 111.4 10.8 133 327-481 5-143 (180)
91 3aji_B S6C, proteasome (prosom 99.1 1.7E-10 5.9E-15 96.7 8.6 75 504-580 2-76 (83)
92 2w58_A DNAI, primosome compone 99.1 2.3E-10 7.9E-15 109.6 8.2 104 327-437 20-128 (202)
93 3f8t_A Predicted ATPase involv 99.0 6.7E-10 2.3E-14 121.1 10.7 215 334-578 215-486 (506)
94 3dzd_A Transcriptional regulat 99.0 7.1E-10 2.4E-14 117.7 10.4 192 332-555 129-361 (368)
95 2dzn_B 26S protease regulatory 99.0 1.2E-10 4.2E-15 97.7 2.8 75 506-582 1-75 (82)
96 2fna_A Conserved hypothetical 99.0 2.1E-08 7.1E-13 102.8 19.8 186 329-550 10-252 (357)
97 2qen_A Walker-type ATPase; unk 99.0 5.7E-08 1.9E-12 99.4 21.8 190 329-549 9-247 (350)
98 2vhj_A Ntpase P4, P4; non- hyd 98.8 6.4E-10 2.2E-14 116.1 1.4 121 362-488 120-242 (331)
99 2qgz_A Helicase loader, putati 98.8 4.1E-09 1.4E-13 109.1 7.2 102 328-437 120-227 (308)
100 2kjq_A DNAA-related protein; s 98.8 1.2E-09 4E-14 101.5 2.1 104 364-499 35-144 (149)
101 2r2a_A Uncharacterized protein 98.7 1.2E-08 4.2E-13 99.5 6.2 128 365-506 5-156 (199)
102 1svm_A Large T antigen; AAA+ f 98.5 3.7E-08 1.3E-12 105.1 3.9 119 360-502 164-284 (377)
103 3cmu_A Protein RECA, recombina 98.5 8.8E-08 3E-12 119.4 7.7 119 361-479 1423-1562(2050)
104 4akg_A Glutathione S-transfera 98.5 2.7E-06 9.2E-11 109.2 21.2 169 366-555 646-840 (2695)
105 1jr3_D DNA polymerase III, del 98.5 7.7E-07 2.6E-11 92.4 12.7 178 364-575 17-209 (343)
106 3vkg_A Dynein heavy chain, cyt 98.2 4.4E-06 1.5E-10 108.1 13.3 137 365-517 1304-1470(3245)
107 1tue_A Replication protein E1; 98.2 7E-07 2.4E-11 87.7 4.1 32 363-394 56-87 (212)
108 1ye8_A Protein THEP1, hypothet 97.9 2.8E-05 9.6E-10 74.0 9.5 27 367-393 2-28 (178)
109 2cvh_A DNA repair and recombin 97.9 1.3E-05 4.5E-10 76.7 7.0 39 361-399 16-54 (220)
110 1u0j_A DNA replication protein 97.9 5.3E-05 1.8E-09 77.0 11.3 27 365-391 104-130 (267)
111 2w0m_A SSO2452; RECA, SSPF, un 97.9 5.4E-05 1.8E-09 72.6 10.8 36 362-397 20-58 (235)
112 3vkg_A Dynein heavy chain, cyt 97.8 7.9E-05 2.7E-09 96.7 13.4 126 366-513 605-750 (3245)
113 1n0w_A DNA repair protein RAD5 97.8 4.4E-05 1.5E-09 74.2 8.6 78 361-438 20-133 (243)
114 1qhx_A CPT, protein (chloramph 97.8 4.7E-05 1.6E-09 70.7 8.1 40 365-404 3-42 (178)
115 2ehv_A Hypothetical protein PH 97.8 0.0001 3.5E-09 71.7 10.5 130 361-502 26-207 (251)
116 2z43_A DNA repair and recombin 97.7 3.5E-05 1.2E-09 79.9 6.9 79 361-439 103-218 (324)
117 1xp8_A RECA protein, recombina 97.7 4.2E-05 1.4E-09 81.2 7.5 78 361-438 70-166 (366)
118 3cmu_A Protein RECA, recombina 97.7 2.9E-05 1E-09 97.1 6.0 120 361-480 728-868 (2050)
119 3hr8_A Protein RECA; alpha and 97.6 3.6E-05 1.2E-09 81.4 5.4 78 361-438 57-153 (356)
120 4a74_A DNA repair and recombin 97.6 0.00012 4E-09 70.4 8.4 29 361-389 21-49 (231)
121 1g41_A Heat shock protein HSLU 97.6 0.00027 9.1E-09 76.8 12.0 157 411-575 239-433 (444)
122 2zr9_A Protein RECA, recombina 97.6 4.3E-05 1.5E-09 80.5 5.3 78 361-438 57-153 (349)
123 1z6t_A APAF-1, apoptotic prote 97.6 0.00027 9.3E-09 78.2 12.0 171 330-545 122-325 (591)
124 1v5w_A DMC1, meiotic recombina 97.6 7.7E-05 2.6E-09 78.0 7.1 79 361-439 118-234 (343)
125 3upu_A ATP-dependent DNA helic 97.5 0.00022 7.5E-09 77.3 9.6 53 325-389 17-69 (459)
126 3sfz_A APAF-1, apoptotic pepti 97.5 0.0013 4.4E-08 78.2 17.0 169 330-540 122-321 (1249)
127 1u94_A RECA protein, recombina 97.5 0.00011 3.7E-09 77.7 6.7 78 361-438 59-155 (356)
128 2dr3_A UPF0273 protein PH0284; 97.5 0.00035 1.2E-08 67.7 9.4 38 361-398 19-59 (247)
129 1gvn_B Zeta; postsegregational 97.4 0.00034 1.2E-08 71.4 9.4 60 338-401 10-69 (287)
130 2p5t_B PEZT; postsegregational 97.4 0.00029 9.9E-09 70.1 8.3 60 338-401 9-68 (253)
131 3trf_A Shikimate kinase, SK; a 97.4 8.2E-05 2.8E-09 69.6 3.7 41 365-407 5-45 (185)
132 2i1q_A DNA repair and recombin 97.4 0.00017 5.7E-09 74.3 6.2 28 361-388 94-121 (322)
133 3cmw_A Protein RECA, recombina 97.4 9.1E-05 3.1E-09 91.7 4.6 78 361-438 728-824 (1706)
134 3lda_A DNA repair protein RAD5 97.3 0.00017 5.7E-09 77.4 5.9 118 361-480 174-327 (400)
135 3io5_A Recombination and repai 97.3 0.00013 4.3E-09 76.2 4.8 76 362-438 26-125 (333)
136 2a5y_B CED-4; apoptosis; HET: 97.3 0.0011 3.9E-08 73.2 12.6 165 335-539 131-329 (549)
137 2rhm_A Putative kinase; P-loop 97.3 0.00011 3.8E-09 68.8 3.5 35 362-396 2-36 (193)
138 2zts_A Putative uncharacterize 97.3 0.00069 2.4E-08 65.7 9.3 38 361-398 26-67 (251)
139 3vaa_A Shikimate kinase, SK; s 97.3 0.00012 4.2E-09 69.8 3.8 40 363-404 23-62 (199)
140 1pzn_A RAD51, DNA repair and r 97.3 0.00029 9.8E-09 74.0 6.9 29 361-389 127-155 (349)
141 3dm5_A SRP54, signal recogniti 97.3 0.00051 1.8E-08 74.6 9.0 197 364-576 99-341 (443)
142 2b8t_A Thymidine kinase; deoxy 97.3 0.00015 5.1E-09 71.8 4.1 70 366-436 13-101 (223)
143 2orw_A Thymidine kinase; TMTK, 97.2 0.00011 3.7E-09 70.2 2.5 31 366-396 4-37 (184)
144 1kag_A SKI, shikimate kinase I 97.2 0.00055 1.9E-08 63.1 6.8 31 365-395 4-34 (173)
145 2iut_A DNA translocase FTSK; n 97.2 0.0032 1.1E-07 70.3 14.0 74 426-513 345-420 (574)
146 2iyv_A Shikimate kinase, SK; t 97.2 0.0002 6.9E-09 67.0 3.7 36 366-403 3-38 (184)
147 1zp6_A Hypothetical protein AT 97.2 0.00027 9.2E-09 66.3 4.4 39 363-401 7-45 (191)
148 3iij_A Coilin-interacting nucl 97.1 0.00023 8E-09 66.4 3.8 33 364-396 10-42 (180)
149 3kb2_A SPBC2 prophage-derived 97.1 0.00026 9E-09 64.8 3.8 31 367-397 3-33 (173)
150 3a4m_A L-seryl-tRNA(SEC) kinas 97.1 0.00063 2.2E-08 68.0 6.9 39 365-403 4-45 (260)
151 2ius_A DNA translocase FTSK; n 97.1 0.0032 1.1E-07 69.5 12.7 76 425-514 297-375 (512)
152 1via_A Shikimate kinase; struc 97.1 0.00024 8.1E-09 66.1 3.2 35 367-403 6-40 (175)
153 2cdn_A Adenylate kinase; phosp 97.1 0.00033 1.1E-08 66.7 4.2 34 363-396 18-51 (201)
154 1y63_A LMAJ004144AAA protein; 97.1 0.00027 9.4E-09 66.6 3.4 32 365-396 10-42 (184)
155 1nlf_A Regulatory protein REPA 97.0 0.00043 1.5E-08 69.6 5.0 27 362-388 27-53 (279)
156 1zuh_A Shikimate kinase; alpha 97.0 0.00035 1.2E-08 64.4 3.4 31 366-396 8-38 (168)
157 2r6a_A DNAB helicase, replicat 97.0 0.00077 2.6E-08 73.0 6.5 37 361-397 199-239 (454)
158 1tev_A UMP-CMP kinase; ploop, 97.0 0.00031 1.1E-08 65.5 3.0 37 365-403 3-39 (196)
159 3e1s_A Exodeoxyribonuclease V, 97.0 0.00055 1.9E-08 76.6 5.4 97 366-480 205-317 (574)
160 1qf9_A UMP/CMP kinase, protein 97.0 0.00035 1.2E-08 65.1 3.2 33 364-396 5-37 (194)
161 3kl4_A SRP54, signal recogniti 97.0 0.0011 3.8E-08 71.7 7.6 199 364-576 96-341 (433)
162 3t61_A Gluconokinase; PSI-biol 96.9 0.00052 1.8E-08 65.3 4.3 32 365-396 18-49 (202)
163 1e6c_A Shikimate kinase; phosp 96.9 0.00043 1.5E-08 63.7 3.5 31 366-396 3-33 (173)
164 3jvv_A Twitching mobility prot 96.9 0.00061 2.1E-08 71.9 5.2 68 367-434 125-206 (356)
165 3lw7_A Adenylate kinase relate 96.9 0.00037 1.3E-08 63.3 3.1 29 367-396 3-31 (179)
166 1aky_A Adenylate kinase; ATP:A 96.9 0.00041 1.4E-08 67.0 3.5 33 364-396 3-35 (220)
167 1ly1_A Polynucleotide kinase; 96.9 0.00035 1.2E-08 64.5 2.8 31 365-395 2-33 (181)
168 1cr0_A DNA primase/helicase; R 96.9 0.00066 2.3E-08 68.7 5.1 29 361-389 31-59 (296)
169 2c95_A Adenylate kinase 1; tra 96.9 0.0004 1.4E-08 65.1 3.3 33 364-396 8-40 (196)
170 4gp7_A Metallophosphoesterase; 96.9 0.0012 4.1E-08 61.7 6.5 21 364-384 8-28 (171)
171 2ze6_A Isopentenyl transferase 96.9 0.00048 1.6E-08 68.8 3.9 32 367-398 3-34 (253)
172 2fz4_A DNA repair protein RAD2 96.9 0.003 1E-07 62.3 9.5 37 367-403 110-147 (237)
173 1zd8_A GTP:AMP phosphotransfer 96.9 0.00043 1.5E-08 67.3 3.2 33 364-396 6-38 (227)
174 2vli_A Antibiotic resistance p 96.8 0.00048 1.6E-08 64.0 3.1 30 365-394 5-34 (183)
175 1zak_A Adenylate kinase; ATP:A 96.8 0.00044 1.5E-08 66.9 2.8 33 364-396 4-36 (222)
176 3dl0_A Adenylate kinase; phosp 96.8 0.00057 2E-08 65.6 3.6 30 367-396 2-31 (216)
177 2bwj_A Adenylate kinase 5; pho 96.8 0.00048 1.7E-08 64.7 3.0 37 365-403 12-48 (199)
178 3be4_A Adenylate kinase; malar 96.8 0.00042 1.4E-08 67.1 2.6 37 365-403 5-41 (217)
179 2r8r_A Sensor protein; KDPD, P 96.8 0.0042 1.4E-07 61.7 9.8 163 366-557 7-210 (228)
180 2q6t_A DNAB replication FORK h 96.8 0.0013 4.3E-08 71.1 6.5 38 361-398 196-237 (444)
181 2pez_A Bifunctional 3'-phospho 96.8 0.00078 2.7E-08 62.8 4.3 38 364-401 4-44 (179)
182 3cm0_A Adenylate kinase; ATP-b 96.8 0.0004 1.4E-08 64.8 2.3 31 366-396 5-35 (186)
183 1ak2_A Adenylate kinase isoenz 96.8 0.00064 2.2E-08 66.5 3.6 32 365-396 16-47 (233)
184 1kht_A Adenylate kinase; phosp 96.8 0.00047 1.6E-08 64.2 2.6 25 366-390 4-28 (192)
185 3bh0_A DNAB-like replicative h 96.8 0.0066 2.3E-07 62.5 11.4 37 361-397 64-103 (315)
186 1ukz_A Uridylate kinase; trans 96.8 0.0006 2.1E-08 64.7 3.4 34 364-397 14-47 (203)
187 3fb4_A Adenylate kinase; psych 96.8 0.00063 2.2E-08 65.2 3.4 30 367-396 2-31 (216)
188 3tlx_A Adenylate kinase 2; str 96.8 0.00061 2.1E-08 67.5 3.2 33 364-396 28-60 (243)
189 2pt5_A Shikimate kinase, SK; a 96.8 0.00071 2.4E-08 62.0 3.4 30 367-396 2-31 (168)
190 3umf_A Adenylate kinase; rossm 96.7 0.00073 2.5E-08 66.5 3.2 40 362-403 26-65 (217)
191 1s96_A Guanylate kinase, GMP k 96.7 0.0038 1.3E-07 61.2 8.2 28 363-390 14-41 (219)
192 1ex7_A Guanylate kinase; subst 96.7 0.0018 6.1E-08 62.2 5.7 24 366-389 2-25 (186)
193 1knq_A Gluconate kinase; ALFA/ 96.7 0.00091 3.1E-08 61.9 3.5 31 365-395 8-38 (175)
194 2eyu_A Twitching motility prot 96.7 0.00046 1.6E-08 69.6 1.5 70 365-434 25-108 (261)
195 4eun_A Thermoresistant glucoki 96.7 0.001 3.5E-08 63.4 3.8 32 364-395 28-59 (200)
196 1vma_A Cell division protein F 96.6 0.0038 1.3E-07 64.4 7.9 72 363-434 102-196 (306)
197 1jjv_A Dephospho-COA kinase; P 96.6 0.0021 7.2E-08 61.1 5.4 34 367-403 4-37 (206)
198 1g5t_A COB(I)alamin adenosyltr 96.6 0.0098 3.4E-07 57.7 10.1 117 366-501 29-178 (196)
199 1e4v_A Adenylate kinase; trans 96.5 0.0012 4E-08 63.6 3.1 30 367-396 2-31 (214)
200 1nks_A Adenylate kinase; therm 96.5 0.0014 4.8E-08 60.9 3.5 35 367-401 3-40 (194)
201 3sr0_A Adenylate kinase; phosp 96.5 0.0012 4.3E-08 64.1 3.2 33 368-402 3-35 (206)
202 2ga8_A Hypothetical 39.9 kDa p 96.5 0.00066 2.3E-08 71.7 1.2 30 366-395 25-54 (359)
203 2gxq_A Heat resistant RNA depe 96.5 0.014 4.6E-07 55.0 10.3 18 366-383 39-56 (207)
204 2pt7_A CAG-ALFA; ATPase, prote 96.5 0.001 3.4E-08 69.4 2.5 71 365-435 171-251 (330)
205 3crm_A TRNA delta(2)-isopenten 96.4 0.0014 4.8E-08 68.4 3.5 34 365-398 5-38 (323)
206 1cke_A CK, MSSA, protein (cyti 96.4 0.0018 6.1E-08 62.3 4.0 30 366-395 6-35 (227)
207 3uie_A Adenylyl-sulfate kinase 96.4 0.002 7E-08 61.3 4.3 39 363-401 23-64 (200)
208 2grj_A Dephospho-COA kinase; T 96.4 0.0029 9.9E-08 60.8 5.4 39 367-407 14-52 (192)
209 2v54_A DTMP kinase, thymidylat 96.4 0.0019 6.7E-08 60.9 4.1 33 365-397 4-37 (204)
210 2pbr_A DTMP kinase, thymidylat 96.4 0.0019 6.4E-08 60.2 3.9 31 367-397 2-35 (195)
211 4a1f_A DNAB helicase, replicat 96.4 0.0081 2.8E-07 62.9 8.9 37 361-397 42-81 (338)
212 2ewv_A Twitching motility prot 96.4 0.0017 5.9E-08 68.7 3.8 72 363-434 134-219 (372)
213 2if2_A Dephospho-COA kinase; a 96.4 0.0015 5.2E-08 61.9 2.9 34 367-403 3-36 (204)
214 3b6e_A Interferon-induced heli 96.3 0.016 5.6E-07 54.5 10.1 23 366-388 49-71 (216)
215 2jaq_A Deoxyguanosine kinase; 96.3 0.0019 6.3E-08 60.7 3.2 30 367-396 2-31 (205)
216 3ake_A Cytidylate kinase; CMP 96.3 0.0023 7.7E-08 60.5 3.8 30 367-396 4-33 (208)
217 1uj2_A Uridine-cytidine kinase 96.3 0.0022 7.6E-08 63.4 3.7 39 364-402 21-67 (252)
218 2xb4_A Adenylate kinase; ATP-b 96.3 0.0019 6.6E-08 62.8 3.2 35 367-403 2-36 (223)
219 2wwf_A Thymidilate kinase, put 96.3 0.0014 4.7E-08 62.3 2.0 32 364-395 9-40 (212)
220 1uf9_A TT1252 protein; P-loop, 96.2 0.0022 7.6E-08 60.3 3.4 37 365-404 8-44 (203)
221 1ltq_A Polynucleotide kinase; 96.2 0.005 1.7E-07 62.0 6.3 37 365-403 2-39 (301)
222 2cbz_A Multidrug resistance-as 96.2 0.011 3.7E-07 58.5 8.4 27 363-389 29-55 (237)
223 3ney_A 55 kDa erythrocyte memb 96.2 0.0047 1.6E-07 59.9 5.6 26 364-389 18-43 (197)
224 2bbw_A Adenylate kinase 4, AK4 96.2 0.003 1E-07 62.2 4.2 31 365-395 27-57 (246)
225 2px0_A Flagellar biosynthesis 96.2 0.016 5.6E-07 59.3 9.9 67 364-432 104-190 (296)
226 2qor_A Guanylate kinase; phosp 96.2 0.0049 1.7E-07 58.8 5.6 29 362-390 9-37 (204)
227 3nwj_A ATSK2; P loop, shikimat 96.2 0.0052 1.8E-07 61.6 5.8 32 365-396 48-79 (250)
228 2z0h_A DTMP kinase, thymidylat 96.2 0.003 1E-07 59.1 3.8 30 368-397 3-35 (197)
229 1nn5_A Similar to deoxythymidy 96.1 0.0018 6E-08 61.6 2.1 29 364-392 8-36 (215)
230 3tau_A Guanylate kinase, GMP k 96.1 0.0052 1.8E-07 59.0 5.3 27 364-390 7-33 (208)
231 3zvl_A Bifunctional polynucleo 96.1 0.007 2.4E-07 64.8 6.7 34 363-396 256-289 (416)
232 1tf7_A KAIC; homohexamer, hexa 96.1 0.025 8.4E-07 62.3 11.1 97 361-464 277-404 (525)
233 3r20_A Cytidylate kinase; stru 96.0 0.0035 1.2E-07 62.3 3.7 31 365-395 9-39 (233)
234 3bgw_A DNAB-like replicative h 96.0 0.024 8.2E-07 61.3 10.6 38 361-398 193-233 (444)
235 2plr_A DTMP kinase, probable t 96.0 0.0033 1.1E-07 59.3 3.3 28 365-392 4-31 (213)
236 3a8t_A Adenylate isopentenyltr 96.0 0.0029 1E-07 66.3 3.1 35 365-399 40-74 (339)
237 2h92_A Cytidylate kinase; ross 95.9 0.004 1.4E-07 59.7 3.6 32 365-396 3-34 (219)
238 3c8u_A Fructokinase; YP_612366 95.9 0.0047 1.6E-07 59.2 4.1 27 364-390 21-47 (208)
239 1w4r_A Thymidine kinase; type 95.9 0.011 3.7E-07 57.3 6.6 69 365-436 20-103 (195)
240 2qt1_A Nicotinamide riboside k 95.9 0.0033 1.1E-07 59.8 2.9 33 365-397 21-54 (207)
241 1w36_D RECD, exodeoxyribonucle 95.9 0.021 7.1E-07 64.2 9.7 23 366-388 165-187 (608)
242 2axn_A 6-phosphofructo-2-kinas 95.9 0.015 5.2E-07 64.2 8.4 40 365-404 35-77 (520)
243 2yvu_A Probable adenylyl-sulfa 95.9 0.0061 2.1E-07 57.0 4.5 38 364-401 12-52 (186)
244 1hv8_A Putative ATP-dependent 95.9 0.034 1.2E-06 56.3 10.4 58 328-387 5-66 (367)
245 1qde_A EIF4A, translation init 95.9 0.052 1.8E-06 51.8 11.1 52 328-381 13-67 (224)
246 3gmt_A Adenylate kinase; ssgci 95.9 0.0082 2.8E-07 59.6 5.5 29 368-396 11-39 (230)
247 1m7g_A Adenylylsulfate kinase; 95.8 0.0048 1.6E-07 59.2 3.8 38 364-401 24-65 (211)
248 1q57_A DNA primase/helicase; d 95.8 0.035 1.2E-06 60.6 11.0 38 361-398 238-279 (503)
249 1vht_A Dephospho-COA kinase; s 95.8 0.0045 1.5E-07 59.4 3.4 31 365-396 4-34 (218)
250 1t6n_A Probable ATP-dependent 95.8 0.061 2.1E-06 51.2 11.3 58 328-387 13-73 (220)
251 1kgd_A CASK, peripheral plasma 95.8 0.0055 1.9E-07 57.4 3.7 27 364-390 4-30 (180)
252 3nh6_A ATP-binding cassette SU 95.8 0.052 1.8E-06 55.9 11.4 28 362-389 77-104 (306)
253 1q3t_A Cytidylate kinase; nucl 95.7 0.0059 2E-07 59.7 4.0 33 363-395 14-46 (236)
254 3foz_A TRNA delta(2)-isopenten 95.7 0.005 1.7E-07 63.9 3.5 34 364-397 9-42 (316)
255 1tf7_A KAIC; homohexamer, hexa 95.7 0.025 8.5E-07 62.2 9.3 113 362-484 36-188 (525)
256 2j41_A Guanylate kinase; GMP, 95.7 0.0058 2E-07 57.6 3.4 26 364-389 5-30 (207)
257 4e22_A Cytidylate kinase; P-lo 95.6 0.0071 2.4E-07 60.1 4.1 30 366-395 28-57 (252)
258 2f6r_A COA synthase, bifunctio 95.6 0.005 1.7E-07 62.3 2.7 36 365-403 75-110 (281)
259 3iuy_A Probable ATP-dependent 95.6 0.028 9.6E-07 54.0 7.9 56 326-383 16-75 (228)
260 3llm_A ATP-dependent RNA helic 95.5 0.042 1.4E-06 53.5 9.2 21 366-386 77-97 (235)
261 2nq2_C Hypothetical ABC transp 95.5 0.058 2E-06 53.9 10.3 26 364-389 30-55 (253)
262 1rz3_A Hypothetical protein rb 95.5 0.017 5.7E-07 55.1 6.0 36 364-399 21-59 (201)
263 2oap_1 GSPE-2, type II secreti 95.4 0.0057 2E-07 67.5 2.8 70 365-434 260-343 (511)
264 1vt4_I APAF-1 related killer D 95.4 0.022 7.6E-07 67.8 7.8 43 335-388 131-173 (1221)
265 1lvg_A Guanylate kinase, GMP k 95.3 0.013 4.5E-07 55.9 4.7 26 364-389 3-28 (198)
266 3d3q_A TRNA delta(2)-isopenten 95.3 0.0077 2.6E-07 63.2 3.2 32 366-397 8-39 (340)
267 1q0u_A Bstdead; DEAD protein, 95.3 0.04 1.4E-06 52.6 8.1 18 366-383 42-59 (219)
268 1vec_A ATP-dependent RNA helic 95.3 0.047 1.6E-06 51.2 8.4 18 366-383 41-58 (206)
269 3thx_B DNA mismatch repair pro 95.3 0.05 1.7E-06 64.1 10.3 25 363-387 671-695 (918)
270 1p9r_A General secretion pathw 95.3 0.026 8.8E-07 60.7 7.2 93 328-433 143-245 (418)
271 3exa_A TRNA delta(2)-isopenten 95.3 0.0091 3.1E-07 62.1 3.5 32 366-397 4-35 (322)
272 2pl3_A Probable ATP-dependent 95.2 0.045 1.5E-06 52.8 8.2 54 328-383 24-80 (236)
273 1xx6_A Thymidine kinase; NESG, 95.2 0.0096 3.3E-07 57.2 3.2 70 366-436 9-93 (191)
274 3tr0_A Guanylate kinase, GMP k 95.2 0.012 3.9E-07 55.5 3.7 25 365-389 7-31 (205)
275 3fdi_A Uncharacterized protein 95.2 0.011 3.7E-07 57.0 3.6 29 367-395 8-36 (201)
276 2bdt_A BH3686; alpha-beta prot 95.2 0.0093 3.2E-07 55.8 3.0 34 367-401 4-37 (189)
277 3asz_A Uridine kinase; cytidin 95.2 0.0078 2.7E-07 57.2 2.5 32 364-395 5-38 (211)
278 2xau_A PRE-mRNA-splicing facto 95.1 0.027 9.1E-07 65.2 7.3 23 366-388 110-132 (773)
279 3fe2_A Probable ATP-dependent 95.1 0.043 1.5E-06 53.4 7.8 54 328-383 28-84 (242)
280 4b3f_X DNA-binding protein smu 95.1 0.081 2.8E-06 59.6 11.0 33 367-399 207-242 (646)
281 2qmh_A HPR kinase/phosphorylas 95.1 0.0092 3.2E-07 58.2 2.8 32 365-397 34-65 (205)
282 4f4c_A Multidrug resistance pr 95.1 0.041 1.4E-06 67.3 9.0 29 362-390 441-469 (1321)
283 3bor_A Human initiation factor 95.1 0.029 9.9E-07 54.6 6.3 55 327-383 28-85 (237)
284 3b60_A Lipid A export ATP-bind 95.1 0.094 3.2E-06 58.4 11.2 28 362-389 366-393 (582)
285 3qf4_A ABC transporter, ATP-bi 95.0 0.082 2.8E-06 59.1 10.6 28 362-389 366-393 (587)
286 3b5x_A Lipid A export ATP-bind 95.0 0.11 3.9E-06 57.7 11.7 28 362-389 366-393 (582)
287 3a00_A Guanylate kinase, GMP k 95.0 0.013 4.4E-07 55.0 3.4 25 366-390 2-26 (186)
288 2j0s_A ATP-dependent RNA helic 94.8 0.11 3.8E-06 53.9 10.4 57 327-385 35-94 (410)
289 1x6v_B Bifunctional 3'-phospho 94.8 0.019 6.4E-07 64.9 4.7 38 364-401 51-91 (630)
290 1odf_A YGR205W, hypothetical 3 94.8 0.024 8.1E-07 57.9 4.9 28 363-390 29-56 (290)
291 4a82_A Cystic fibrosis transme 94.8 0.1 3.5E-06 58.1 10.5 28 362-389 364-391 (578)
292 3e70_C DPA, signal recognition 94.7 0.047 1.6E-06 56.8 7.1 27 363-389 127-153 (328)
293 3eph_A TRNA isopentenyltransfe 94.7 0.012 4.2E-07 63.1 2.7 32 365-396 2-33 (409)
294 3lnc_A Guanylate kinase, GMP k 94.7 0.017 6E-07 55.9 3.6 26 364-389 26-52 (231)
295 3tui_C Methionine import ATP-b 94.6 0.073 2.5E-06 56.3 8.4 26 364-389 53-78 (366)
296 2yhs_A FTSY, cell division pro 94.6 0.058 2E-06 59.3 7.9 28 362-389 290-317 (503)
297 2gza_A Type IV secretion syste 94.6 0.023 7.9E-07 59.6 4.5 71 364-434 174-262 (361)
298 1ls1_A Signal recognition part 94.6 0.077 2.6E-06 54.1 8.2 72 364-435 97-191 (295)
299 1xti_A Probable ATP-dependent 94.5 0.3 1E-05 50.0 12.8 56 329-386 8-66 (391)
300 2xxa_A Signal recognition part 94.5 0.045 1.5E-06 59.1 6.5 71 363-433 98-192 (433)
301 3qf4_B Uncharacterized ABC tra 94.5 0.068 2.3E-06 59.8 8.2 28 362-389 378-405 (598)
302 1z6g_A Guanylate kinase; struc 94.4 0.021 7.3E-07 55.3 3.6 27 363-389 21-47 (218)
303 3eiq_A Eukaryotic initiation f 94.3 0.11 3.8E-06 53.7 9.0 54 329-384 40-96 (414)
304 1bif_A 6-phosphofructo-2-kinas 94.3 0.08 2.7E-06 57.3 8.2 35 365-399 39-76 (469)
305 1zu4_A FTSY; GTPase, signal re 94.3 0.045 1.6E-06 56.6 6.0 36 362-397 102-140 (320)
306 2v3c_C SRP54, signal recogniti 94.3 0.033 1.1E-06 60.1 5.1 35 364-398 98-135 (432)
307 2jeo_A Uridine-cytidine kinase 94.3 0.019 6.5E-07 56.4 2.8 28 365-392 25-52 (245)
308 3pey_A ATP-dependent RNA helic 94.2 0.18 6.3E-06 51.4 10.3 21 365-385 44-64 (395)
309 3p32_A Probable GTPase RV1496/ 94.2 0.13 4.5E-06 53.5 9.3 25 365-389 79-103 (355)
310 1znw_A Guanylate kinase, GMP k 94.2 0.026 8.8E-07 53.9 3.5 27 364-390 19-45 (207)
311 2j37_W Signal recognition part 94.2 0.047 1.6E-06 60.1 6.0 36 363-398 99-137 (504)
312 2oxc_A Probable ATP-dependent 94.2 0.23 8E-06 47.7 10.4 54 327-382 22-78 (230)
313 3thx_A DNA mismatch repair pro 94.2 0.098 3.4E-06 61.7 9.0 23 365-387 662-684 (934)
314 3ber_A Probable ATP-dependent 94.2 0.14 4.8E-06 50.3 8.9 55 327-383 41-98 (249)
315 1htw_A HI0065; nucleotide-bind 94.2 0.027 9.3E-07 52.3 3.5 27 363-389 31-57 (158)
316 3b9q_A Chloroplast SRP recepto 94.1 0.036 1.2E-06 56.9 4.6 28 362-389 97-124 (302)
317 2ged_A SR-beta, signal recogni 94.1 0.043 1.5E-06 50.7 4.7 27 363-389 46-72 (193)
318 2fwr_A DNA repair protein RAD2 94.1 0.1 3.4E-06 55.8 8.2 37 367-403 110-147 (472)
319 1fuu_A Yeast initiation factor 94.1 0.13 4.6E-06 52.7 8.8 55 327-383 19-76 (394)
320 1s2m_A Putative ATP-dependent 94.0 0.21 7E-06 51.6 10.2 58 327-386 19-79 (400)
321 1m8p_A Sulfate adenylyltransfe 94.0 0.074 2.5E-06 59.4 7.1 39 365-403 396-438 (573)
322 2va8_A SSO2462, SKI2-type heli 94.0 0.16 5.4E-06 57.6 10.0 57 327-385 6-66 (715)
323 3j16_B RLI1P; ribosome recycli 94.0 0.24 8.2E-06 55.7 11.3 25 365-389 103-127 (608)
324 2z0m_A 337AA long hypothetical 94.0 0.16 5.5E-06 50.7 9.1 32 366-397 32-63 (337)
325 2v9p_A Replication protein E1; 94.0 0.031 1.1E-06 57.7 3.8 29 361-389 122-150 (305)
326 1sky_E F1-ATPase, F1-ATP synth 93.9 0.06 2E-06 58.8 5.9 23 367-389 153-175 (473)
327 1gtv_A TMK, thymidylate kinase 93.9 0.013 4.3E-07 55.6 0.6 24 367-390 2-25 (214)
328 1wp9_A ATP-dependent RNA helic 93.9 0.11 3.8E-06 54.1 7.9 32 367-398 25-60 (494)
329 2zj8_A DNA helicase, putative 93.8 0.2 7E-06 56.8 10.5 19 365-383 39-57 (720)
330 3hdt_A Putative kinase; struct 93.8 0.027 9.3E-07 55.3 2.9 29 367-395 16-44 (223)
331 1c9k_A COBU, adenosylcobinamid 93.7 0.034 1.2E-06 53.1 3.3 31 368-399 2-32 (180)
332 1a7j_A Phosphoribulokinase; tr 93.7 0.023 7.8E-07 57.9 2.1 36 366-401 6-44 (290)
333 3ly5_A ATP-dependent RNA helic 93.7 0.15 5.1E-06 50.5 8.0 18 366-383 92-109 (262)
334 4b4t_J 26S protease regulatory 93.6 0.036 1.2E-06 59.4 3.7 54 242-295 289-371 (405)
335 4eaq_A DTMP kinase, thymidylat 93.6 0.037 1.3E-06 54.3 3.5 32 364-395 25-58 (229)
336 1wb9_A DNA mismatch repair pro 93.6 0.19 6.4E-06 58.4 9.9 24 365-388 607-630 (800)
337 3i5x_A ATP-dependent RNA helic 93.6 0.22 7.4E-06 54.5 10.0 18 365-382 111-128 (563)
338 2j9r_A Thymidine kinase; TK1, 93.6 0.058 2E-06 53.0 4.7 30 368-397 31-63 (214)
339 3sqw_A ATP-dependent RNA helic 93.6 0.22 7.4E-06 55.0 10.0 19 364-382 59-77 (579)
340 2og2_A Putative signal recogni 93.5 0.048 1.6E-06 57.5 4.4 28 362-389 154-181 (359)
341 3fht_A ATP-dependent RNA helic 93.5 0.22 7.7E-06 51.3 9.3 54 328-383 24-82 (412)
342 1sq5_A Pantothenate kinase; P- 93.4 0.037 1.3E-06 56.6 3.1 27 364-390 79-105 (308)
343 1j8m_F SRP54, signal recogniti 93.4 0.068 2.3E-06 54.7 5.1 70 365-434 98-190 (297)
344 2i3b_A HCR-ntpase, human cance 93.2 0.041 1.4E-06 52.5 2.9 23 367-389 3-25 (189)
345 4f4c_A Multidrug resistance pr 93.1 0.094 3.2E-06 64.1 6.6 27 363-389 1103-1129(1321)
346 3tqc_A Pantothenate kinase; bi 93.1 0.11 3.8E-06 53.9 6.3 28 363-390 90-117 (321)
347 3oiy_A Reverse gyrase helicase 93.1 0.051 1.7E-06 57.0 3.7 20 366-385 37-56 (414)
348 4i1u_A Dephospho-COA kinase; s 93.1 0.09 3.1E-06 51.3 5.1 131 365-514 9-152 (210)
349 1p5z_B DCK, deoxycytidine kina 93.0 0.024 8.2E-07 56.2 1.0 31 364-394 23-54 (263)
350 3fmp_B ATP-dependent RNA helic 93.0 0.23 7.9E-06 53.1 8.8 57 329-387 92-154 (479)
351 1np6_A Molybdopterin-guanine d 93.0 0.053 1.8E-06 51.2 3.3 27 363-389 4-30 (174)
352 3fmo_B ATP-dependent RNA helic 92.9 0.17 5.7E-06 51.4 7.2 53 328-382 91-148 (300)
353 1gm5_A RECG; helicase, replica 92.9 0.36 1.2E-05 55.9 10.7 34 364-397 388-424 (780)
354 2ffh_A Protein (FFH); SRP54, s 92.8 0.26 8.7E-06 53.1 8.7 70 364-433 97-189 (425)
355 3ozx_A RNAse L inhibitor; ATP 92.8 0.31 1E-05 54.0 9.6 26 364-389 293-318 (538)
356 3vkw_A Replicase large subunit 92.7 0.14 4.8E-06 55.5 6.5 24 365-388 161-184 (446)
357 2ocp_A DGK, deoxyguanosine kin 92.6 0.059 2E-06 52.6 3.2 27 365-391 2-29 (241)
358 3dkp_A Probable ATP-dependent 92.6 0.51 1.8E-05 45.5 9.9 17 366-382 67-83 (245)
359 1rj9_A FTSY, signal recognitio 92.6 0.067 2.3E-06 55.0 3.6 26 364-389 101-126 (304)
360 4b4t_H 26S protease regulatory 92.5 0.052 1.8E-06 59.1 2.9 54 242-295 350-432 (467)
361 3aez_A Pantothenate kinase; tr 92.5 0.064 2.2E-06 55.3 3.4 27 363-389 88-114 (312)
362 3cr8_A Sulfate adenylyltranfer 92.5 0.14 4.7E-06 57.1 6.2 40 364-403 368-411 (552)
363 4a2p_A RIG-I, retinoic acid in 92.4 0.76 2.6E-05 49.4 12.0 23 366-388 23-45 (556)
364 3kta_A Chromosome segregation 92.4 0.069 2.4E-06 49.3 3.2 24 367-390 28-51 (182)
365 2orv_A Thymidine kinase; TP4A 92.4 0.26 9E-06 48.9 7.5 68 366-436 20-102 (234)
366 3tif_A Uncharacterized ABC tra 92.3 0.06 2E-06 53.1 2.7 27 363-389 29-55 (235)
367 1ewq_A DNA mismatch repair pro 92.3 0.29 9.8E-06 56.6 8.8 24 365-388 576-599 (765)
368 3g5u_A MCG1178, multidrug resi 92.3 0.38 1.3E-05 58.7 10.3 28 362-389 413-440 (1284)
369 2gks_A Bifunctional SAT/APS ki 92.3 0.24 8.1E-06 55.0 7.8 39 365-403 372-413 (546)
370 2p6r_A Afuhel308 helicase; pro 92.3 0.13 4.6E-06 58.2 5.9 21 365-385 40-60 (702)
371 3tbk_A RIG-I helicase domain; 92.1 1.1 3.7E-05 48.0 12.7 23 366-388 20-42 (555)
372 1xjc_A MOBB protein homolog; s 92.1 0.08 2.7E-06 50.0 3.2 25 365-389 4-28 (169)
373 2pcj_A ABC transporter, lipopr 92.0 0.059 2E-06 52.7 2.3 26 364-389 29-54 (224)
374 2onk_A Molybdate/tungstate ABC 92.0 0.077 2.6E-06 52.5 3.2 24 366-389 25-48 (240)
375 3b85_A Phosphate starvation-in 92.0 0.054 1.9E-06 52.5 2.0 22 367-388 24-45 (208)
376 1lw7_A Transcriptional regulat 92.0 0.08 2.7E-06 55.2 3.4 28 365-392 170-197 (365)
377 3q72_A GTP-binding protein RAD 91.9 0.081 2.8E-06 47.2 3.0 22 367-388 4-25 (166)
378 3tqf_A HPR(Ser) kinase; transf 91.9 0.07 2.4E-06 51.0 2.5 28 365-393 16-43 (181)
379 2f9l_A RAB11B, member RAS onco 91.8 0.081 2.8E-06 49.5 3.0 22 367-388 7-28 (199)
380 1nrj_B SR-beta, signal recogni 91.8 0.094 3.2E-06 49.5 3.5 26 364-389 11-36 (218)
381 2o8b_B DNA mismatch repair pro 91.8 0.5 1.7E-05 56.3 10.4 21 365-385 789-809 (1022)
382 3h1t_A Type I site-specific re 91.8 0.21 7.1E-06 55.2 6.7 44 335-388 178-221 (590)
383 1yrb_A ATP(GTP)binding protein 91.8 0.36 1.2E-05 47.0 7.8 26 364-389 13-38 (262)
384 1b0u_A Histidine permease; ABC 91.8 0.074 2.5E-06 53.3 2.8 26 364-389 31-56 (262)
385 3fho_A ATP-dependent RNA helic 91.8 0.41 1.4E-05 52.0 8.9 19 365-383 158-176 (508)
386 2zu0_C Probable ATP-dependent 91.7 0.092 3.1E-06 52.8 3.3 26 363-388 44-69 (267)
387 3ux8_A Excinuclease ABC, A sub 91.6 0.43 1.5E-05 54.0 9.2 22 364-385 347-368 (670)
388 2qm8_A GTPase/ATPase; G protei 91.6 0.2 6.8E-06 52.0 6.0 26 364-389 54-79 (337)
389 1oix_A RAS-related protein RAB 91.6 0.081 2.8E-06 49.4 2.7 23 367-389 31-53 (191)
390 1z2a_A RAS-related protein RAB 91.6 0.08 2.7E-06 47.1 2.5 23 366-388 6-28 (168)
391 2dyk_A GTP-binding protein; GT 91.6 0.093 3.2E-06 46.5 2.9 22 367-388 3-24 (161)
392 1mv5_A LMRA, multidrug resista 91.6 0.073 2.5E-06 52.6 2.4 26 364-389 27-52 (243)
393 4b4t_M 26S protease regulatory 91.6 0.066 2.2E-06 57.9 2.2 55 242-296 322-405 (434)
394 4b4t_I 26S protease regulatory 91.5 0.056 1.9E-06 58.4 1.6 55 241-295 322-405 (437)
395 1sgw_A Putative ABC transporte 91.5 0.082 2.8E-06 51.5 2.7 26 364-389 34-59 (214)
396 2ghi_A Transport protein; mult 91.5 0.082 2.8E-06 52.9 2.7 27 363-389 44-70 (260)
397 1wrb_A DJVLGB; RNA helicase, D 91.4 0.47 1.6E-05 46.1 8.1 18 366-383 61-78 (253)
398 2d2e_A SUFC protein; ABC-ATPas 91.4 0.096 3.3E-06 52.0 3.1 25 364-388 28-52 (250)
399 1g6h_A High-affinity branched- 91.4 0.082 2.8E-06 52.7 2.6 25 365-389 33-57 (257)
400 2ixe_A Antigen peptide transpo 91.4 0.071 2.4E-06 53.8 2.1 27 363-389 43-69 (271)
401 2pze_A Cystic fibrosis transme 91.3 0.086 2.9E-06 51.7 2.6 26 364-389 33-58 (229)
402 2olj_A Amino acid ABC transpor 91.3 0.088 3E-06 52.9 2.8 27 363-389 48-74 (263)
403 3ozx_A RNAse L inhibitor; ATP 91.3 0.55 1.9E-05 52.0 9.4 23 367-389 27-49 (538)
404 1g8f_A Sulfate adenylyltransfe 91.2 0.1 3.6E-06 57.5 3.5 27 365-391 395-421 (511)
405 3l9o_A ATP-dependent RNA helic 91.2 0.34 1.2E-05 58.2 8.1 23 366-388 200-222 (1108)
406 1ji0_A ABC transporter; ATP bi 91.1 0.09 3.1E-06 51.9 2.6 26 364-389 31-56 (240)
407 2ff7_A Alpha-hemolysin translo 91.1 0.09 3.1E-06 52.2 2.6 26 364-389 34-59 (247)
408 2wsm_A Hydrogenase expression/ 91.1 0.15 5.3E-06 48.2 4.1 24 366-389 31-54 (221)
409 4edh_A DTMP kinase, thymidylat 91.1 0.14 4.9E-06 49.7 4.0 31 366-396 7-40 (213)
410 3sop_A Neuronal-specific septi 91.1 0.091 3.1E-06 52.9 2.6 23 367-389 4-26 (270)
411 2yz2_A Putative ABC transporte 91.1 0.095 3.2E-06 52.6 2.7 27 363-389 31-57 (266)
412 1vpl_A ABC transporter, ATP-bi 91.1 0.097 3.3E-06 52.4 2.8 26 364-389 40-65 (256)
413 2qi9_C Vitamin B12 import ATP- 91.0 0.096 3.3E-06 52.2 2.6 26 364-389 25-50 (249)
414 1kao_A RAP2A; GTP-binding prot 91.0 0.12 4E-06 45.7 3.0 22 367-388 5-26 (167)
415 2lkc_A Translation initiation 91.0 0.14 4.8E-06 46.2 3.6 25 364-388 7-31 (178)
416 2f1r_A Molybdopterin-guanine d 91.0 0.07 2.4E-06 50.2 1.6 25 366-390 3-27 (171)
417 3gfo_A Cobalt import ATP-bindi 91.0 0.097 3.3E-06 53.0 2.7 25 365-389 34-58 (275)
418 3lv8_A DTMP kinase, thymidylat 91.0 0.11 3.7E-06 51.5 2.9 26 364-389 26-51 (236)
419 2ce2_X GTPase HRAS; signaling 90.9 0.11 3.6E-06 45.9 2.6 23 367-389 5-27 (166)
420 3fvq_A Fe(3+) IONS import ATP- 90.9 0.087 3E-06 55.6 2.4 25 365-389 30-54 (359)
421 2i4i_A ATP-dependent RNA helic 90.9 1.4 4.9E-05 45.4 11.7 53 328-382 14-69 (417)
422 2gk6_A Regulator of nonsense t 90.9 0.097 3.3E-06 58.8 2.9 22 367-388 197-218 (624)
423 2zej_A Dardarin, leucine-rich 90.8 0.089 3E-06 48.6 2.1 22 367-388 4-25 (184)
424 2wji_A Ferrous iron transport 90.8 0.11 3.6E-06 47.2 2.6 22 367-388 5-26 (165)
425 1svi_A GTP-binding protein YSX 90.8 0.08 2.7E-06 48.8 1.7 25 364-388 22-46 (195)
426 1u8z_A RAS-related protein RAL 90.8 0.12 4.2E-06 45.7 2.9 23 366-388 5-27 (168)
427 2nzj_A GTP-binding protein REM 90.8 0.11 3.8E-06 46.7 2.6 23 366-388 5-27 (175)
428 4g1u_C Hemin import ATP-bindin 90.7 0.097 3.3E-06 52.6 2.4 26 364-389 36-61 (266)
429 1z0j_A RAB-22, RAS-related pro 90.7 0.13 4.3E-06 45.9 2.9 24 366-389 7-30 (170)
430 3d31_A Sulfate/molybdate ABC t 90.7 0.091 3.1E-06 55.1 2.3 26 364-389 25-50 (348)
431 2it1_A 362AA long hypothetical 90.7 0.1 3.6E-06 55.0 2.7 25 365-389 29-53 (362)
432 1ek0_A Protein (GTP-binding pr 90.7 0.13 4.4E-06 45.7 3.0 22 367-388 5-26 (170)
433 3e2i_A Thymidine kinase; Zn-bi 90.7 0.063 2.1E-06 52.9 0.9 30 367-396 30-62 (219)
434 2yyz_A Sugar ABC transporter, 90.7 0.1 3.5E-06 54.9 2.6 26 364-389 28-53 (359)
435 2p67_A LAO/AO transport system 90.7 0.33 1.1E-05 50.3 6.4 26 364-389 55-80 (341)
436 2ihy_A ABC transporter, ATP-bi 90.6 0.11 3.7E-06 52.7 2.6 26 364-389 46-71 (279)
437 1z47_A CYSA, putative ABC-tran 90.6 0.11 3.7E-06 54.7 2.7 25 365-389 41-65 (355)
438 3dz8_A RAS-related protein RAB 90.6 0.45 1.6E-05 43.8 6.8 23 367-389 25-47 (191)
439 3rlf_A Maltose/maltodextrin im 90.6 0.11 3.7E-06 55.3 2.7 26 364-389 28-53 (381)
440 1v43_A Sugar-binding transport 90.6 0.11 3.7E-06 55.0 2.7 26 364-389 36-61 (372)
441 4b4t_L 26S protease subunit RP 90.5 0.09 3.1E-06 56.9 2.0 55 241-295 321-404 (437)
442 2erx_A GTP-binding protein DI- 90.5 0.13 4.5E-06 45.8 2.8 22 367-388 5-26 (172)
443 1wms_A RAB-9, RAB9, RAS-relate 90.4 0.14 4.8E-06 46.1 3.0 23 366-388 8-30 (177)
444 2f7s_A C25KG, RAS-related prot 90.4 0.72 2.4E-05 43.3 8.1 22 367-388 27-48 (217)
445 1ky3_A GTP-binding protein YPT 90.4 0.14 4.7E-06 46.2 2.9 24 365-388 8-31 (182)
446 1z08_A RAS-related protein RAB 90.4 0.14 4.8E-06 45.7 3.0 23 366-388 7-29 (170)
447 3ice_A Transcription terminati 90.4 0.45 1.6E-05 50.9 7.3 25 365-389 174-198 (422)
448 3g5u_A MCG1178, multidrug resi 90.3 0.42 1.4E-05 58.3 7.9 28 362-389 1056-1083(1284)
449 3v9p_A DTMP kinase, thymidylat 90.3 0.17 5.8E-06 49.8 3.7 25 365-389 25-49 (227)
450 2wjg_A FEOB, ferrous iron tran 90.3 0.13 4.5E-06 47.0 2.7 23 366-388 8-30 (188)
451 2pjz_A Hypothetical protein ST 90.3 0.11 3.7E-06 52.3 2.3 25 365-389 30-54 (263)
452 2iw3_A Elongation factor 3A; a 90.3 0.76 2.6E-05 54.4 9.7 24 364-387 460-483 (986)
453 2hxs_A RAB-26, RAS-related pro 90.2 0.15 5.2E-06 45.9 3.1 23 366-388 7-29 (178)
454 1g29_1 MALK, maltose transport 90.2 0.12 4.2E-06 54.6 2.7 25 365-389 29-53 (372)
455 1g16_A RAS-related protein SEC 90.2 0.13 4.6E-06 45.7 2.7 22 367-388 5-26 (170)
456 1r2q_A RAS-related protein RAB 90.2 0.15 5.1E-06 45.3 3.0 23 366-388 7-29 (170)
457 3q85_A GTP-binding protein REM 90.1 0.13 4.5E-06 45.9 2.6 21 367-387 4-24 (169)
458 2db3_A ATP-dependent RNA helic 90.1 0.83 2.8E-05 48.5 9.2 52 328-381 55-109 (434)
459 1upt_A ARL1, ADP-ribosylation 90.1 0.17 5.6E-06 45.3 3.2 24 365-388 7-30 (171)
460 4a2q_A RIG-I, retinoic acid in 90.1 1.8 6.1E-05 49.8 12.6 23 366-388 264-286 (797)
461 3tmk_A Thymidylate kinase; pho 90.1 0.21 7.3E-06 48.7 4.2 29 365-393 5-33 (216)
462 1c1y_A RAS-related protein RAP 90.0 0.16 5.4E-06 45.1 3.0 22 367-388 5-26 (167)
463 3bc1_A RAS-related protein RAB 90.0 0.15 5.3E-06 46.3 3.0 23 366-388 12-34 (195)
464 4b4t_K 26S protease regulatory 90.0 0.14 4.9E-06 55.2 3.0 56 241-296 312-397 (428)
465 1oxx_K GLCV, glucose, ABC tran 89.9 0.093 3.2E-06 55.1 1.5 26 364-389 30-55 (353)
466 2v6i_A RNA helicase; membrane, 89.9 0.35 1.2E-05 51.6 6.0 21 366-386 3-24 (431)
467 1r8s_A ADP-ribosylation factor 89.9 0.17 5.7E-06 45.0 3.0 22 367-388 2-23 (164)
468 2gj8_A MNME, tRNA modification 89.7 0.14 4.7E-06 47.0 2.3 23 366-388 5-27 (172)
469 1z0f_A RAB14, member RAS oncog 89.7 0.17 5.9E-06 45.4 3.0 23 366-388 16-38 (179)
470 2atv_A RERG, RAS-like estrogen 89.6 0.18 6E-06 46.9 3.1 24 365-388 28-51 (196)
471 4dsu_A GTPase KRAS, isoform 2B 89.6 0.18 6.1E-06 45.9 3.0 24 366-389 5-28 (189)
472 3clv_A RAB5 protein, putative; 89.6 0.2 6.9E-06 45.7 3.4 24 365-388 7-30 (208)
473 3t1o_A Gliding protein MGLA; G 89.6 0.18 6E-06 46.1 3.0 24 366-389 15-38 (198)
474 2y8e_A RAB-protein 6, GH09086P 89.6 0.16 5.5E-06 45.6 2.7 23 366-388 15-37 (179)
475 3gd7_A Fusion complex of cysti 89.5 0.13 4.6E-06 54.7 2.4 26 363-388 45-70 (390)
476 2bbs_A Cystic fibrosis transme 89.4 0.14 4.9E-06 52.1 2.5 27 363-389 62-88 (290)
477 2fn4_A P23, RAS-related protei 89.4 0.17 5.9E-06 45.5 2.7 23 366-388 10-32 (181)
478 2a9k_A RAS-related protein RAL 89.4 0.19 6.4E-06 45.5 3.0 23 366-388 19-41 (187)
479 3cph_A RAS-related protein SEC 89.4 0.18 6E-06 47.1 2.9 24 365-388 20-43 (213)
480 3con_A GTPase NRAS; structural 89.4 0.19 6.3E-06 46.2 3.0 24 366-389 22-45 (190)
481 2efe_B Small GTP-binding prote 89.4 0.19 6.5E-06 45.4 3.0 23 366-388 13-35 (181)
482 1pui_A ENGB, probable GTP-bind 89.3 0.079 2.7E-06 49.6 0.4 27 363-389 24-50 (210)
483 2oca_A DAR protein, ATP-depend 89.3 0.56 1.9E-05 50.5 7.1 22 367-388 130-151 (510)
484 2npi_A Protein CLP1; CLP1-PCF1 89.3 0.17 5.7E-06 55.0 3.0 28 362-389 135-162 (460)
485 2oil_A CATX-8, RAS-related pro 89.3 0.19 6.5E-06 46.3 3.0 23 366-388 26-48 (193)
486 1m7b_A RND3/RHOE small GTP-bin 89.1 0.18 6.2E-06 46.2 2.7 23 366-388 8-30 (184)
487 3ld9_A DTMP kinase, thymidylat 89.0 0.2 6.9E-06 49.2 3.1 27 364-390 20-46 (223)
488 1f2t_A RAD50 ABC-ATPase; DNA d 89.0 0.19 6.5E-06 45.8 2.7 23 367-389 25-47 (149)
489 3tw8_B RAS-related protein RAB 89.0 0.19 6.4E-06 45.2 2.7 23 366-388 10-32 (181)
490 2hf9_A Probable hydrogenase ni 89.0 0.38 1.3E-05 45.6 5.0 25 365-389 38-62 (226)
491 4ag6_A VIRB4 ATPase, type IV s 89.0 0.3 1E-05 51.2 4.6 34 364-397 34-70 (392)
492 2bme_A RAB4A, RAS-related prot 88.9 0.19 6.5E-06 45.8 2.7 23 366-388 11-33 (186)
493 4a2w_A RIG-I, retinoic acid in 88.9 2.4 8.1E-05 49.9 12.6 24 366-389 264-287 (936)
494 2g6b_A RAS-related protein RAB 88.9 0.21 7.3E-06 45.0 3.0 24 365-388 10-33 (180)
495 3ch4_B Pmkase, phosphomevalona 88.9 0.17 5.9E-06 49.1 2.4 41 362-402 8-49 (202)
496 2wjy_A Regulator of nonsense t 88.9 0.17 6E-06 58.6 2.9 22 367-388 373-394 (800)
497 1mh1_A RAC1; GTP-binding, GTPa 88.8 0.22 7.5E-06 45.1 3.0 22 367-388 7-28 (186)
498 3kkq_A RAS-related protein M-R 88.7 0.22 7.5E-06 45.3 3.0 23 366-388 19-41 (183)
499 2vp4_A Deoxynucleoside kinase; 88.7 0.15 5.3E-06 49.4 2.0 24 365-388 20-43 (230)
500 3bwd_D RAC-like GTP-binding pr 88.7 0.26 8.8E-06 44.6 3.4 24 365-388 8-31 (182)
No 1
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=9.8e-54 Score=458.51 Aligned_cols=260 Identities=37% Similarity=0.631 Sum_probs=243.8
Q ss_pred ccccCCCCcccccccCChHHHHHHHHHHHH-hcChhHHhhcCCCCCCceEEeCCCCChHHHHHHHHHHhcCCCeeeechh
Q 007575 321 KVSEQGDTITFADVAGVDEAKEELEEIVEF-LRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSAS 399 (597)
Q Consensus 321 ~~~~~~~~vtf~dV~G~de~k~~L~eiv~~-l~~p~~~~~lg~~~p~gVLL~GPPGTGKT~LArAIA~el~~pfi~is~s 399 (597)
....+.|+++|+||+|++++|++|+++|.+ +++|+.|..+|.++|+|+|||||||||||+||+|+|+++++||+.++++
T Consensus 137 ~~~~~~p~v~~~dIgGl~~~k~~l~e~v~~Pl~~pe~f~~~gi~~prGvLL~GPPGTGKTllAkAiA~e~~~~f~~v~~s 216 (405)
T 4b4t_J 137 MMVEKVPDSTYDMVGGLTKQIKEIKEVIELPVKHPELFESLGIAQPKGVILYGPPGTGKTLLARAVAHHTDCKFIRVSGA 216 (405)
T ss_dssp CEEECSCSCCGGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCCEEEESCSSSSHHHHHHHHHHHHTCEEEEEEGG
T ss_pred ccccCCCCCCHHHhCCHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCceEEeCCCCCCHHHHHHHHHHhhCCCceEEEhH
Confidence 345677999999999999999999999999 9999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHhhcchHHHHHHHHHHHhcCCeEEEEcCcchhhhhcCCcccccchhHHHHHHHHHHHHhcCCCCCCcEEEEEecC
Q 007575 400 EFVELYVGMGASRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATN 479 (597)
Q Consensus 400 ef~~~~vG~~e~~vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~eqtLnqLL~emdg~~~~~~VIVIaaTN 479 (597)
++.++|+|++++.++++|..|+..+||||||||||+++.+|..+. .+++.+..+++++||++||++....+|+||+|||
T Consensus 217 ~l~sk~vGese~~vr~lF~~Ar~~aP~IIFiDEiDai~~~R~~~~-~~~~~~~~~~l~~lL~~lDg~~~~~~V~vIaATN 295 (405)
T 4b4t_J 217 ELVQKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSTRVEGS-GGGDSEVQRTMLELLNQLDGFETSKNIKIIMATN 295 (405)
T ss_dssp GGSCSSTTHHHHHHHHHHHHHHHTCSEEEEEESSSCCTTSCSCSS-SGGGGHHHHHHHHHHHHHHTTTCCCCEEEEEEES
T ss_pred HhhccccchHHHHHHHHHHHHHHhCCceEeeecchhhccCCCCCC-CCCcHHHHHHHHHHHHhhhccCCCCCeEEEeccC
Confidence 999999999999999999999999999999999999998886542 3456678899999999999999999999999999
Q ss_pred CCCCCChhhhCCCCcceEEEecCCCHHHHHHHHHHHHhcCCCCCCCCCCHHHHHHhCCCCCHHHHHHHHHHHHHHHHhcC
Q 007575 480 RSDVLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTTGFTGADLANLVNEAALLAGRLN 559 (597)
Q Consensus 480 rpd~LD~aLlRpgRFd~~I~v~~Pd~~eR~eILk~~l~~~~~~l~~dvdl~~LA~~t~G~SgaDL~~Lv~eAal~A~r~~ 559 (597)
+|+.||+||+||||||+.|+|++||.++|.+||+.|+++ +++.+++|++.||..|+||||+||.++|++|++.|.+++
T Consensus 296 rpd~LDpAllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~--~~l~~dvdl~~lA~~t~G~SGADi~~l~~eA~~~Air~~ 373 (405)
T 4b4t_J 296 RLDILDPALLRPGRIDRKIEFPPPSVAARAEILRIHSRK--MNLTRGINLRKVAEKMNGCSGADVKGVCTEAGMYALRER 373 (405)
T ss_dssp CSSSSCHHHHSTTSSCCEEECCCCCHHHHHHHHHHHHTT--SBCCSSCCHHHHHHHCCSCCHHHHHHHHHHHHHHHHHTT
T ss_pred ChhhCCHhHcCCCcCceEEEcCCcCHHHHHHHHHHHhcC--CCCCccCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHcC
Confidence 999999999999999999999999999999999999965 567789999999999999999999999999999999999
Q ss_pred CCcccHHHHHHHHHHHhccccccc
Q 007575 560 KVVVEKIDFIHAVERSIAVSLSLS 583 (597)
Q Consensus 560 ~~~It~~d~~~Al~~v~~g~~k~s 583 (597)
...|+++||+.|+++++....+..
T Consensus 374 ~~~vt~~Df~~Al~~v~~~~~~~~ 397 (405)
T 4b4t_J 374 RIHVTQEDFELAVGKVMNKNQETA 397 (405)
T ss_dssp CSBCCHHHHHHHHHHHHHHHTCC-
T ss_pred CCCcCHHHHHHHHHHHhCcccccc
Confidence 999999999999999987765543
No 2
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.4e-52 Score=449.62 Aligned_cols=259 Identities=39% Similarity=0.656 Sum_probs=243.7
Q ss_pred cccCCCCcccccccCChHHHHHHHHHHHH-hcChhHHhhcCCCCCCceEEeCCCCChHHHHHHHHHHhcCCCeeeechhh
Q 007575 322 VSEQGDTITFADVAGVDEAKEELEEIVEF-LRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASE 400 (597)
Q Consensus 322 ~~~~~~~vtf~dV~G~de~k~~L~eiv~~-l~~p~~~~~lg~~~p~gVLL~GPPGTGKT~LArAIA~el~~pfi~is~se 400 (597)
..++.|+++|+||+|++++|++|++.+.+ +++|+.|..+|.++|+|||||||||||||+||+|+|++++++|+.+++++
T Consensus 172 ~~~~~p~v~~~DIgGld~~k~~L~e~v~~Pl~~pe~f~~~Gi~~prGvLLyGPPGTGKTlLAkAiA~e~~~~fi~v~~s~ 251 (437)
T 4b4t_I 172 KMDKSPTESYSDIGGLESQIQEIKESVELPLTHPELYEEMGIKPPKGVILYGAPGTGKTLLAKAVANQTSATFLRIVGSE 251 (437)
T ss_dssp EEESSCCCCGGGTCSCHHHHHHHHHHHHHHHHCCHHHHHHTCCCCSEEEEESSTTTTHHHHHHHHHHHHTCEEEEEESGG
T ss_pred eeccCCCCcceecCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCCCceECCCCchHHHHHHHHHHHhCCCEEEEEHHH
Confidence 34678999999999999999999999998 89999999999999999999999999999999999999999999999999
Q ss_pred hHHHHhhcchHHHHHHHHHHHhcCCeEEEEcCcchhhhhcCCcccccchhHHHHHHHHHHHHhcCCCCCCcEEEEEecCC
Q 007575 401 FVELYVGMGASRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATNR 480 (597)
Q Consensus 401 f~~~~vG~~e~~vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~eqtLnqLL~emdg~~~~~~VIVIaaTNr 480 (597)
+.++|+|++++.++.+|..|+..+||||||||||+++..|.... ...+.+..+++++||++||++....+|+||+|||+
T Consensus 252 l~sk~vGesek~ir~lF~~Ar~~aP~IIfiDEiDai~~~R~~~~-~~~~~~~~~~l~~LL~~lDg~~~~~~ViVIaATNr 330 (437)
T 4b4t_I 252 LIQKYLGDGPRLCRQIFKVAGENAPSIVFIDEIDAIGTKRYDSN-SGGEREIQRTMLELLNQLDGFDDRGDVKVIMATNK 330 (437)
T ss_dssp GCCSSSSHHHHHHHHHHHHHHHTCSEEEEEEEESSSSCCCSCSS-CSSCCHHHHHHHHHHHHHHHCCCSSSEEEEEEESC
T ss_pred hhhccCchHHHHHHHHHHHHHhcCCcEEEEehhhhhcccCCCCC-CCccHHHHHHHHHHHHHhhCcCCCCCEEEEEeCCC
Confidence 99999999999999999999999999999999999999886542 34456778999999999999999999999999999
Q ss_pred CCCCChhhhCCCCcceEEEecCCCHHHHHHHHHHHHhcCCCCCCCCCCHHHHHHhCCCCCHHHHHHHHHHHHHHHHhcCC
Q 007575 481 SDVLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTTGFTGADLANLVNEAALLAGRLNK 560 (597)
Q Consensus 481 pd~LD~aLlRpgRFd~~I~v~~Pd~~eR~eILk~~l~~~~~~l~~dvdl~~LA~~t~G~SgaDL~~Lv~eAal~A~r~~~ 560 (597)
|+.||+||+||||||++|+|++||.++|.+||+.|+++ +++.+++|++.||..|+||||+||.++|++|++.|.+++.
T Consensus 331 pd~LDpALlRpGRfD~~I~v~lPd~~~R~~Il~~~l~~--~~l~~dvdl~~LA~~T~GfSGADI~~l~~eA~~~Air~~~ 408 (437)
T 4b4t_I 331 IETLDPALIRPGRIDRKILFENPDLSTKKKILGIHTSK--MNLSEDVNLETLVTTKDDLSGADIQAMCTEAGLLALRERR 408 (437)
T ss_dssp STTCCTTSSCTTTEEEEECCCCCCHHHHHHHHHHHHTT--SCBCSCCCHHHHHHHCCSCCHHHHHHHHHHHHHHHHHTTC
T ss_pred hhhcCHHHhcCCceeEEEEcCCcCHHHHHHHHHHHhcC--CCCCCcCCHHHHHHhCCCCCHHHHHHHHHHHHHHHHHcCC
Confidence 99999999999999999999999999999999999975 5677899999999999999999999999999999999999
Q ss_pred CcccHHHHHHHHHHHhccccccc
Q 007575 561 VVVEKIDFIHAVERSIAVSLSLS 583 (597)
Q Consensus 561 ~~It~~d~~~Al~~v~~g~~k~s 583 (597)
..|+++||++|++++.++..+.+
T Consensus 409 ~~It~eDf~~Al~rv~~~~~~e~ 431 (437)
T 4b4t_I 409 MQVTAEDFKQAKERVMKNKVEEN 431 (437)
T ss_dssp SCBCHHHHHHHHHHHHHHHCCCS
T ss_pred CccCHHHHHHHHHHHhCCCChhh
Confidence 99999999999999998765543
No 3
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=4.6e-52 Score=451.04 Aligned_cols=259 Identities=41% Similarity=0.650 Sum_probs=243.3
Q ss_pred ccCCCCcccccccCChHHHHHHHHHHHH-hcChhHHhhcCCCCCCceEEeCCCCChHHHHHHHHHHhcCCCeeeechhhh
Q 007575 323 SEQGDTITFADVAGVDEAKEELEEIVEF-LRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEF 401 (597)
Q Consensus 323 ~~~~~~vtf~dV~G~de~k~~L~eiv~~-l~~p~~~~~lg~~~p~gVLL~GPPGTGKT~LArAIA~el~~pfi~is~sef 401 (597)
.++.|+++|+||+|++++|++|++.|.+ +++|+.|..+|.++|+|||||||||||||+||+|+|++++++|+.++++++
T Consensus 200 v~e~P~vt~~DIgGl~~~k~~L~e~V~~pl~~pe~f~~~Gi~pprGILLyGPPGTGKTlLAkAiA~e~~~~fi~vs~s~L 279 (467)
T 4b4t_H 200 VEEKPDVTYSDVGGCKDQIEKLREVVELPLLSPERFATLGIDPPKGILLYGPPGTGKTLCARAVANRTDATFIRVIGSEL 279 (467)
T ss_dssp EESSCSCCCSSCTTCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCSEEEECSCTTSSHHHHHHHHHHHHTCEEEEEEGGGG
T ss_pred ecCCCCCCHHHhccHHHHHHHHHHHHHHHhcCHHHHHHCCCCCCCceEeeCCCCCcHHHHHHHHHhccCCCeEEEEhHHh
Confidence 4678999999999999999999999998 999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhcchHHHHHHHHHHHhcCCeEEEEcCcchhhhhcCCcccccchhHHHHHHHHHHHHhcCCCCCCcEEEEEecCCC
Q 007575 402 VELYVGMGASRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATNRS 481 (597)
Q Consensus 402 ~~~~vG~~e~~vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~eqtLnqLL~emdg~~~~~~VIVIaaTNrp 481 (597)
.++|+|++++.++.+|..|+..+||||||||+|+++..|+... .+.+....++++++|.+||++....+|+||+|||+|
T Consensus 280 ~sk~vGesek~ir~lF~~Ar~~aP~IIfiDEiDai~~~R~~~~-~~~~~~~~~~l~~lL~~lDg~~~~~~ViVIaATNrp 358 (467)
T 4b4t_H 280 VQKYVGEGARMVRELFEMARTKKACIIFFDEIDAVGGARFDDG-AGGDNEVQRTMLELITQLDGFDPRGNIKVMFATNRP 358 (467)
T ss_dssp CCCSSSHHHHHHHHHHHHHHHTCSEEEEEECCTTTSBCCSSSS-CGGGGHHHHHHHHHHHHHHSSCCTTTEEEEEECSCT
T ss_pred hcccCCHHHHHHHHHHHHHHhcCCceEeecccccccccccCcC-CCccHHHHHHHHHHHHHhhccCCCCcEEEEeCCCCc
Confidence 9999999999999999999999999999999999998886542 344567788999999999999999999999999999
Q ss_pred CCCChhhhCCCCcceEEEecCCCHHHHHHHHHHHHhcCCCCCCCCCCHHHHHHhCCCCCHHHHHHHHHHHHHHHHhcCCC
Q 007575 482 DVLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTTGFTGADLANLVNEAALLAGRLNKV 561 (597)
Q Consensus 482 d~LD~aLlRpgRFd~~I~v~~Pd~~eR~eILk~~l~~~~~~l~~dvdl~~LA~~t~G~SgaDL~~Lv~eAal~A~r~~~~ 561 (597)
+.||+||+||||||++|+|++|+.++|.+||+.|+++ +++..+++++.||+.|+||||+||.++|++|++.|.+++..
T Consensus 359 d~LDpALlRpGRFD~~I~i~lPd~~~R~~Ilk~~l~~--~~l~~dvdl~~LA~~T~GfSGADI~~l~~eAa~~Air~~~~ 436 (467)
T 4b4t_H 359 NTLDPALLRPGRIDRKVEFSLPDLEGRANIFRIHSKS--MSVERGIRWELISRLCPNSTGAELRSVCTEAGMFAIRARRK 436 (467)
T ss_dssp TSBCHHHHSTTTCCEEECCCCCCHHHHHHHHHHHHTT--SCBCSSCCHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHTCS
T ss_pred ccCChhhhccccccEEEEeCCcCHHHHHHHHHHHhcC--CCCCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHcCCC
Confidence 9999999999999999999999999999999999965 56778899999999999999999999999999999999999
Q ss_pred cccHHHHHHHHHHHhcccccccc
Q 007575 562 VVEKIDFIHAVERSIAVSLSLSL 584 (597)
Q Consensus 562 ~It~~d~~~Al~~v~~g~~k~s~ 584 (597)
.|+++||..|+++++++.+|.+-
T Consensus 437 ~it~~Df~~Al~kV~~g~~k~s~ 459 (467)
T 4b4t_H 437 VATEKDFLKAVDKVISGYKKFSS 459 (467)
T ss_dssp SBCHHHHHHHHHHHHHHHCC---
T ss_pred ccCHHHHHHHHHHHhcCcccchh
Confidence 99999999999999999887653
No 4
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.5e-51 Score=444.84 Aligned_cols=255 Identities=40% Similarity=0.647 Sum_probs=239.9
Q ss_pred cccCCCCcccccccCChHHHHHHHHHHHH-hcChhHHhhcCCCCCCceEEeCCCCChHHHHHHHHHHhcCCCeeeechhh
Q 007575 322 VSEQGDTITFADVAGVDEAKEELEEIVEF-LRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASE 400 (597)
Q Consensus 322 ~~~~~~~vtf~dV~G~de~k~~L~eiv~~-l~~p~~~~~lg~~~p~gVLL~GPPGTGKT~LArAIA~el~~pfi~is~se 400 (597)
..++.|+++|+||+|++++|++|++.+.+ +++|+.|..+|.++|+|||||||||||||++|+|+|+++++||+.+++++
T Consensus 171 ~~~~~p~~t~~digGl~~~k~~l~e~v~~pl~~pe~f~~~g~~~prGvLLyGPPGTGKTllAkAiA~e~~~~f~~v~~s~ 250 (434)
T 4b4t_M 171 EVDEKPTETYSDVGGLDKQIEELVEAIVLPMKRADKFKDMGIRAPKGALMYGPPGTGKTLLARACAAQTNATFLKLAAPQ 250 (434)
T ss_dssp EEESSCSCCGGGSCSCHHHHHHHHHHTHHHHHCSHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHHTCEEEEEEGGG
T ss_pred ccCCCCCCChHhcCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeeEEECcCCCCHHHHHHHHHHHhCCCEEEEehhh
Confidence 34677999999999999999999998877 99999999999999999999999999999999999999999999999999
Q ss_pred hHHHHhhcchHHHHHHHHHHHhcCCeEEEEcCcchhhhhcCCcccccchhHHHHHHHHHHHHhcCCCCCCcEEEEEecCC
Q 007575 401 FVELYVGMGASRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATNR 480 (597)
Q Consensus 401 f~~~~vG~~e~~vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~eqtLnqLL~emdg~~~~~~VIVIaaTNr 480 (597)
+.++|+|++++.++.+|..|+..+||||||||||+++.+|.... .+++.+..+++++||.+||++....+|+||+|||+
T Consensus 251 l~~~~vGese~~ir~lF~~A~~~aP~IifiDEiDal~~~R~~~~-~~~~~~~~~~~~~lL~~ldg~~~~~~ViVIaaTNr 329 (434)
T 4b4t_M 251 LVQMYIGEGAKLVRDAFALAKEKAPTIIFIDELDAIGTKRFDSE-KSGDREVQRTMLELLNQLDGFSSDDRVKVLAATNR 329 (434)
T ss_dssp GCSSCSSHHHHHHHHHHHHHHHHCSEEEEEECTHHHHCCCSSGG-GGTTHHHHHHHHHHHHHHTTSCSSCSSEEEEECSS
T ss_pred hhhcccchHHHHHHHHHHHHHhcCCeEEeecchhhhhhccCCCC-CCCchHHHHHHHHHHHHhhccCCCCCEEEEEeCCC
Confidence 99999999999999999999999999999999999999886542 33456778899999999999999999999999999
Q ss_pred CCCCChhhhCCCCcceEEEecCCCHHHHHHHHHHHHhcCCCCCCCCCCHHHHHHhCCCCCHHHHHHHHHHHHHHHHhcCC
Q 007575 481 SDVLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTTGFTGADLANLVNEAALLAGRLNK 560 (597)
Q Consensus 481 pd~LD~aLlRpgRFd~~I~v~~Pd~~eR~eILk~~l~~~~~~l~~dvdl~~LA~~t~G~SgaDL~~Lv~eAal~A~r~~~ 560 (597)
|+.||+||+||||||+.|+|++||.++|.+||+.|+++ +++.++++++.||+.|+||||+||.++|++|++.|.+++.
T Consensus 330 p~~LD~AllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~--~~~~~dvdl~~lA~~t~G~sGADi~~l~~eA~~~a~r~~~ 407 (434)
T 4b4t_M 330 VDVLDPALLRSGRLDRKIEFPLPSEDSRAQILQIHSRK--MTTDDDINWQELARSTDEFNGAQLKAVTVEAGMIALRNGQ 407 (434)
T ss_dssp CCCCCTTTCSTTSEEEEEECCCCCHHHHHHHHHHHHHH--SCBCSCCCHHHHHHHCSSCCHHHHHHHHHHHHHHHHHHTC
T ss_pred chhcCHhHhcCCceeEEEEeCCcCHHHHHHHHHHHhcC--CCCCCcCCHHHHHHhCCCCCHHHHHHHHHHHHHHHHHcCC
Confidence 99999999999999999999999999999999999976 4677889999999999999999999999999999999999
Q ss_pred CcccHHHHHHHHHHHhccc
Q 007575 561 VVVEKIDFIHAVERSIAVS 579 (597)
Q Consensus 561 ~~It~~d~~~Al~~v~~g~ 579 (597)
..|+.+||.+|++++.+..
T Consensus 408 ~~i~~~Df~~Al~~v~~~~ 426 (434)
T 4b4t_M 408 SSVKHEDFVEGISEVQARK 426 (434)
T ss_dssp SSBCHHHHHHHHHSCSSSC
T ss_pred CCcCHHHHHHHHHHHhCCC
Confidence 9999999999999987654
No 5
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=6.2e-51 Score=442.01 Aligned_cols=255 Identities=42% Similarity=0.674 Sum_probs=240.3
Q ss_pred cccCCCCcccccccCChHHHHHHHHHHHH-hcChhHHhhcCCCCCCceEEeCCCCChHHHHHHHHHHhcCCCeeeechhh
Q 007575 322 VSEQGDTITFADVAGVDEAKEELEEIVEF-LRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASE 400 (597)
Q Consensus 322 ~~~~~~~vtf~dV~G~de~k~~L~eiv~~-l~~p~~~~~lg~~~p~gVLL~GPPGTGKT~LArAIA~el~~pfi~is~se 400 (597)
...+.|+++|+||+|++++|++|++.+.+ +++|+.|..+|.++|+|||||||||||||+||+|+|++++++|+.+++++
T Consensus 171 ~~~~~p~v~~~digGl~~~k~~l~e~v~~pl~~p~~f~~~g~~~prGvLL~GPPGtGKTllAkAiA~e~~~~~~~v~~s~ 250 (437)
T 4b4t_L 171 TSFEQGEITFDGIGGLTEQIRELREVIELPLKNPEIFQRVGIKPPKGVLLYGPPGTGKTLLAKAVAATIGANFIFSPASG 250 (437)
T ss_dssp EEEESCSSCSGGGCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHHTCEEEEEEGGG
T ss_pred eeccCCCCChhHhCChHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEehhh
Confidence 34567999999999999999999999998 99999999999999999999999999999999999999999999999999
Q ss_pred hHHHHhhcchHHHHHHHHHHHhcCCeEEEEcCcchhhhhcCCcccccchhHHHHHHHHHHHHhcCCCCCCcEEEEEecCC
Q 007575 401 FVELYVGMGASRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATNR 480 (597)
Q Consensus 401 f~~~~vG~~e~~vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~eqtLnqLL~emdg~~~~~~VIVIaaTNr 480 (597)
+.++|+|++++.++.+|..|+..+||||||||||+++.+|.... ...+.+..+++++||.+||++....+|+||+|||+
T Consensus 251 l~sk~~Gese~~ir~~F~~A~~~~P~IifiDEiDai~~~R~~~~-~~~~~~~~~~l~~lL~~lDg~~~~~~vivI~ATNr 329 (437)
T 4b4t_L 251 IVDKYIGESARIIREMFAYAKEHEPCIIFMDEVDAIGGRRFSEG-TSADREIQRTLMELLTQMDGFDNLGQTKIIMATNR 329 (437)
T ss_dssp TCCSSSSHHHHHHHHHHHHHHHSCSEEEEEECCCSSSCCCSSSC-CSSTTHHHHHHHHHHHHHHSSSCTTSSEEEEEESS
T ss_pred hccccchHHHHHHHHHHHHHHhcCCceeeeecccccccccccCC-CCcchHHHHHHHHHHHHhhcccCCCCeEEEEecCC
Confidence 99999999999999999999999999999999999999886532 23456788899999999999999999999999999
Q ss_pred CCCCChhhhCCCCcceEEEecCCCHHHHHHHHHHHHhcCCCCCCCCCCHHHHHHhCCCCCHHHHHHHHHHHHHHHHhcCC
Q 007575 481 SDVLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTTGFTGADLANLVNEAALLAGRLNK 560 (597)
Q Consensus 481 pd~LD~aLlRpgRFd~~I~v~~Pd~~eR~eILk~~l~~~~~~l~~dvdl~~LA~~t~G~SgaDL~~Lv~eAal~A~r~~~ 560 (597)
|+.|||||+||||||+.|+|++||.++|.+||+.|+++ +++..++|++.||..|+||||+||.++|++|++.|.+++.
T Consensus 330 p~~LDpAllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~--~~~~~d~dl~~lA~~t~G~sGADi~~l~~eA~~~air~~~ 407 (437)
T 4b4t_L 330 PDTLDPALLRPGRLDRKVEIPLPNEAGRLEIFKIHTAK--VKKTGEFDFEAAVKMSDGFNGADIRNCATEAGFFAIRDDR 407 (437)
T ss_dssp TTSSCTTTTSTTSEEEEECCCCCCHHHHHHHHHHHHHT--SCBCSCCCHHHHHHTCCSCCHHHHHHHHHHHHHHHHHTTC
T ss_pred chhhCHHHhCCCccceeeecCCcCHHHHHHHHHHHhcC--CCCCcccCHHHHHHhCCCCCHHHHHHHHHHHHHHHHHcCC
Confidence 99999999999999999999999999999999999976 4667889999999999999999999999999999999999
Q ss_pred CcccHHHHHHHHHHHhccc
Q 007575 561 VVVEKIDFIHAVERSIAVS 579 (597)
Q Consensus 561 ~~It~~d~~~Al~~v~~g~ 579 (597)
..|+.+||..|++++....
T Consensus 408 ~~i~~~d~~~Al~~v~~~~ 426 (437)
T 4b4t_L 408 DHINPDDLMKAVRKVAEVK 426 (437)
T ss_dssp SSBCHHHHHHHHHHHHHTC
T ss_pred CCCCHHHHHHHHHHHHhcc
Confidence 9999999999999987653
No 6
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3.5e-50 Score=435.36 Aligned_cols=254 Identities=43% Similarity=0.655 Sum_probs=238.5
Q ss_pred ccCCCCcccccccCChHHHHHHHHHHHH-hcChhHHhhcCCCCCCceEEeCCCCChHHHHHHHHHHhcCCCeeeechhhh
Q 007575 323 SEQGDTITFADVAGVDEAKEELEEIVEF-LRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEF 401 (597)
Q Consensus 323 ~~~~~~vtf~dV~G~de~k~~L~eiv~~-l~~p~~~~~lg~~~p~gVLL~GPPGTGKT~LArAIA~el~~pfi~is~sef 401 (597)
.++.|+++|+||+|++++|++|++.+.+ +++|+.|..+|.++|+|+|||||||||||++|+|+|++++++|+.++++++
T Consensus 163 ~~~~p~v~~~digGl~~~k~~l~e~v~~pl~~p~~~~~~g~~~prGiLL~GPPGtGKT~lakAiA~~~~~~~~~v~~~~l 242 (428)
T 4b4t_K 163 ENEKPDVTYADVGGLDMQKQEIREAVELPLVQADLYEQIGIDPPRGVLLYGPPGTGKTMLVKAVANSTKAAFIRVNGSEF 242 (428)
T ss_dssp EESSCSCCGGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTTTHHHHHHHHHHHHTCEEEEEEGGGT
T ss_pred CCCCCCCCHHHhccHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCceEEEECCCCCCHHHHHHHHHHHhCCCeEEEecchh
Confidence 4577899999999999999999999987 899999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhcchHHHHHHHHHHHhcCCeEEEEcCcchhhhhcCCcccccchhHHHHHHHHHHHHhcCCCCCCcEEEEEecCCC
Q 007575 402 VELYVGMGASRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATNRS 481 (597)
Q Consensus 402 ~~~~vG~~e~~vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~eqtLnqLL~emdg~~~~~~VIVIaaTNrp 481 (597)
.++|+|++++.++++|..|+..+||||||||+|+++..|.... .+.+.+..+++++||++|||+....+|+||+|||+|
T Consensus 243 ~~~~~Ge~e~~ir~lF~~A~~~aP~IifiDEiD~i~~~R~~~~-~~~~~~~~r~l~~lL~~ldg~~~~~~v~vI~aTN~~ 321 (428)
T 4b4t_K 243 VHKYLGEGPRMVRDVFRLARENAPSIIFIDEVDSIATKRFDAQ-TGSDREVQRILIELLTQMDGFDQSTNVKVIMATNRA 321 (428)
T ss_dssp CCSSCSHHHHHHHHHHHHHHHTCSEEEEEECTHHHHCSCSSSC-SCCCCHHHHHHHHHHHHHHHSCSSCSEEEEEEESCS
T ss_pred hccccchhHHHHHHHHHHHHHcCCCeeechhhhhhhccccCCC-CCCChHHHHHHHHHHHHhhCCCCCCCEEEEEecCCh
Confidence 9999999999999999999999999999999999999886532 344567889999999999999999999999999999
Q ss_pred CCCChhhhCCCCcceEEEec-CCCHHHHHHHHHHHHhcCCCCCCCCCCHHHHHHhCCCCCHHHHHHHHHHHHHHHHhcCC
Q 007575 482 DVLDPALRRPGRFDRVVMVE-TPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTTGFTGADLANLVNEAALLAGRLNK 560 (597)
Q Consensus 482 d~LD~aLlRpgRFd~~I~v~-~Pd~~eR~eILk~~l~~~~~~l~~dvdl~~LA~~t~G~SgaDL~~Lv~eAal~A~r~~~ 560 (597)
+.||+||+||||||+.|+++ +|+.++|.+||+.|+++ +++.+++|++.||..|+||||+||.++|++|++.|.++++
T Consensus 322 ~~LD~AllRpGRfd~~I~~p~lPd~~~R~~Il~~~~~~--~~l~~~~dl~~lA~~t~G~sgadi~~l~~eA~~~a~r~~~ 399 (428)
T 4b4t_K 322 DTLDPALLRPGRLDRKIEFPSLRDRRERRLIFGTIASK--MSLAPEADLDSLIIRNDSLSGAVIAAIMQEAGLRAVRKNR 399 (428)
T ss_dssp SSCCHHHHSSSSEEEEEECCSSCCHHHHHHHHHHHHHS--SCBCTTCCHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTC
T ss_pred hhcChhhhcCCcceEEEEcCCCCCHHHHHHHHHHHhcC--CCCCcccCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCC
Confidence 99999999999999999996 89999999999999975 4677889999999999999999999999999999999999
Q ss_pred CcccHHHHHHHHHHHhccc
Q 007575 561 VVVEKIDFIHAVERSIAVS 579 (597)
Q Consensus 561 ~~It~~d~~~Al~~v~~g~ 579 (597)
..|+++||++|+.+++...
T Consensus 400 ~~i~~~d~~~A~~~~~~~~ 418 (428)
T 4b4t_K 400 YVILQSDLEEAYATQVKTD 418 (428)
T ss_dssp SSBCHHHHHHHHHHHSCSC
T ss_pred CCCCHHHHHHHHHHhhCcc
Confidence 9999999999999876443
No 7
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=100.00 E-value=1.9e-51 Score=473.83 Aligned_cols=335 Identities=34% Similarity=0.621 Sum_probs=248.2
Q ss_pred eeEEEecCCCCCchhHHH--HHhCCceecCCCCC---------------------------CcCcHHHHHHHHHHHHHHH
Q 007575 242 RIVYTTTRPSDIKTPYEK--MLENQVEFGSPDKR---------------------------SGGFLNSALIALFYVAVLA 292 (597)
Q Consensus 242 ~~~~~t~~~~~~~~~~~~--~~~~~v~~~~~~~~---------------------------~~~~~~~~l~~l~~~~~l~ 292 (597)
.++.+||+|+++|+++++ +|+++++++.|+.. ++||.+++|..+|-.|.+.
T Consensus 342 ~VIaaTN~~d~LD~ALrR~GRFd~~I~i~~Pd~~~R~~IL~~~l~~~~~~~dvdl~~lA~~T~GfsgaDL~~Lv~eA~~~ 421 (806)
T 3cf2_A 342 IVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLADDVDLEQVANETHGHVGADLAALCSEAALQ 421 (806)
T ss_dssp EEEEECSSTTTSCTTTTSTTSSCEEEECCCCCHHHHHHHHHHTCSSSEECTTCCHHHHHHHCCSCCHHHHHHHHHHHHHH
T ss_pred EEEEecCChhhcCHHHhCCcccceEEecCCCCHHHHHHHHHHHhcCCCCCcccCHHHHHHhcCCCCHHHHHHHHHHHHHH
Confidence 467999999999999875 89999999888743 6899999999999999999
Q ss_pred HHHhhcccccc-c-------------ccccc--cccccCCCCCCccccCCCCcccccccCChHHHHHHHHHHHH-hcChh
Q 007575 293 GLLHRFPVSFS-Q-------------TAGQV--GHRKTRGPGGAKVSEQGDTITFADVAGVDEAKEELEEIVEF-LRSPD 355 (597)
Q Consensus 293 ~~~~~~~~~~~-~-------------~~~~~--~~~~~~~~~~~~~~~~~~~vtf~dV~G~de~k~~L~eiv~~-l~~p~ 355 (597)
++.+.....-. . ..... ......++.......+.|+++|+|++|++++|++|++.+.+ +++|+
T Consensus 422 A~~r~~~~i~~~~~~~~~e~~~~~~v~~~Df~~Al~~~~ps~~r~~~~~~p~v~w~diggl~~~k~~l~e~v~~p~~~p~ 501 (806)
T 3cf2_A 422 AIRKKMDLIDLEDETIDAEVMNSLAVTMDDFRWALSQSNPSALRETVVEVPQVTWEDIGGLEDVKRELQELVQYPVEHPD 501 (806)
T ss_dssp HHHHHHHHGGGTCCCCSHHHHHHCEECTTHHHHHHSSSSCCCCCCCCCBCCCCCSTTCCSCHHHHHHHTTTTTTTTTCSG
T ss_pred HHHhccccccccccccchhhhccceeeHHHHHHHHHhCCCcccccccccCCCCCHHHhCCHHHHHHHHHHHHHhhhhCHH
Confidence 88765421100 0 00000 00111222223344567899999999999999999999998 78999
Q ss_pred HHhhcCCCCCCceEEeCCCCChHHHHHHHHHHhcCCCeeeechhhhHHHHhhcchHHHHHHHHHHHhcCCeEEEEcCcch
Q 007575 356 KYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFVELYVGMGASRVRDLFARAKKEAPSIIFIDEIDA 435 (597)
Q Consensus 356 ~~~~lg~~~p~gVLL~GPPGTGKT~LArAIA~el~~pfi~is~sef~~~~vG~~e~~vr~lF~~A~~~aP~ILfIDEIDa 435 (597)
.|.+.|.++|+|+|||||||||||++|+|+|++++.||+.+++++++++|+|++++.++++|+.|+..+||||||||||+
T Consensus 502 ~f~~~g~~~~~gvLl~GPPGtGKT~lAkaiA~e~~~~f~~v~~~~l~s~~vGese~~vr~lF~~Ar~~~P~IifiDEiDs 581 (806)
T 3cf2_A 502 KFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMWFGESEANVREIFDKARQAAPCVLFFDELDS 581 (806)
T ss_dssp GGSSSCCCCCSCCEEESSTTSSHHHHHHHHHHTTTCEEEECCHHHHHTTTCSSCHHHHHHHHHHHHTTCSEEEECSCGGG
T ss_pred HHHhcCCCCCceEEEecCCCCCchHHHHHHHHHhCCceEEeccchhhccccchHHHHHHHHHHHHHHcCCceeechhhhH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhcCCcccccchhHHHHHHHHHHHHhcCCCCCCcEEEEEecCCCCCCChhhhCCCCcceEEEecCCCHHHHHHHHHHH
Q 007575 436 VAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATNRSDVLDPALRRPGRFDRVVMVETPDKIGREAILKVH 515 (597)
Q Consensus 436 L~~~r~~~~~~~~~~e~eqtLnqLL~emdg~~~~~~VIVIaaTNrpd~LD~aLlRpgRFd~~I~v~~Pd~~eR~eILk~~ 515 (597)
|+..|+... ...+...++++++||++||++....+|+||+|||+|+.||+|++||||||++|+|++||.++|.+||+.|
T Consensus 582 l~~~R~~~~-~~~~~~~~rv~~~lL~~mdg~~~~~~V~vi~aTN~p~~lD~AllRpgRfd~~i~v~lPd~~~R~~il~~~ 660 (806)
T 3cf2_A 582 IAKARGGNI-GDGGGAADRVINQILTEMDGMSTKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKAN 660 (806)
T ss_dssp CC---------------CHHHHHHHHHHHSSCSSSSEEEECC-CCSSSSCHHHHSTTTSCCEEEC-----CHHHHTTTTT
T ss_pred HhhccCCCC-CCCchHHHHHHHHHHHHHhCCCCCCCEEEEEeCCCchhCCHhHcCCCcceEEEEECCcCHHHHHHHHHHH
Confidence 999886431 2345567889999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhcCCCCCCCCCCHHHHHHhCCCCCHHHHHHHHHHHHHHHHhcC-------------------------CCcccHHHHHH
Q 007575 516 VSKKELPLAKDIDLGDIASMTTGFTGADLANLVNEAALLAGRLN-------------------------KVVVEKIDFIH 570 (597)
Q Consensus 516 l~~~~~~l~~dvdl~~LA~~t~G~SgaDL~~Lv~eAal~A~r~~-------------------------~~~It~~d~~~ 570 (597)
+++ .++.+++|++.||+.|+||||+||.++|++|++.|.++. ...|+++||++
T Consensus 661 l~~--~~~~~~~dl~~la~~t~g~SGadi~~l~~~A~~~a~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~df~~ 738 (806)
T 3cf2_A 661 LRK--SPVAKDVDLEFLAKMTNGFSGADLTEICQRACKLAIRESIESEIRRERERQTNPSAMEVEEDDPVPEIRRDHFEE 738 (806)
T ss_dssp SSC--C--CCC----------------CHHHHHHHHHHHHHHHHHC-----------------------CCC----CCTT
T ss_pred hcC--CCCCCCCCHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhccCccccccccccccCccCHHHHHH
Confidence 965 567788999999999999999999999999999998752 12589999999
Q ss_pred HHHHHhccc
Q 007575 571 AVERSIAVS 579 (597)
Q Consensus 571 Al~~v~~g~ 579 (597)
|+.++.+..
T Consensus 739 al~~~~pSv 747 (806)
T 3cf2_A 739 AMRFARRSV 747 (806)
T ss_dssp TC-------
T ss_pred HHHhCCCCC
Confidence 999887653
No 8
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=100.00 E-value=1.2e-42 Score=381.48 Aligned_cols=263 Identities=59% Similarity=0.907 Sum_probs=234.0
Q ss_pred CCCcccccccCChHHHHHHHHHHHHhcChhHHhhcCCCCCCceEEeCCCCChHHHHHHHHHHhcCCCeeeechhhhHHHH
Q 007575 326 GDTITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFVELY 405 (597)
Q Consensus 326 ~~~vtf~dV~G~de~k~~L~eiv~~l~~p~~~~~lg~~~p~gVLL~GPPGTGKT~LArAIA~el~~pfi~is~sef~~~~ 405 (597)
.+.++|+||+|+++++++|++++.+++++..|..+|.+.|+|+||+||||||||+||+++|+++++||+.++++++.+.+
T Consensus 10 ~~~~~f~di~G~~~~~~~l~e~v~~l~~~~~~~~~g~~~p~gvLL~GppGtGKT~Laraia~~~~~~f~~is~~~~~~~~ 89 (476)
T 2ce7_A 10 NKRVTFKDVGGAEEAIEELKEVVEFLKDPSKFNRIGARMPKGILLVGPPGTGKTLLARAVAGEANVPFFHISGSDFVELF 89 (476)
T ss_dssp SCCCCGGGCCSCHHHHHHHHHHHHHHHCTHHHHTTTCCCCSEEEEECCTTSSHHHHHHHHHHHHTCCEEEEEGGGTTTCC
T ss_pred CCCCCHHHhCCcHHHHHHHHHHHHHhhChHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHHcCCCeeeCCHHHHHHHH
Confidence 56799999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhcchHHHHHHHHHHHhcCCeEEEEcCcchhhhhcCCcccccchhHHHHHHHHHHHHhcCCCCCCcEEEEEecCCCCCCC
Q 007575 406 VGMGASRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATNRSDVLD 485 (597)
Q Consensus 406 vG~~e~~vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~eqtLnqLL~emdg~~~~~~VIVIaaTNrpd~LD 485 (597)
+|.++.+++.+|..|+..+||||||||||.++.+++.. ..+.+++..+++++|+.+|+++....+++||++||+++.||
T Consensus 90 ~g~~~~~~r~lf~~A~~~~p~ILfIDEid~l~~~r~~~-~~g~~~~~~~~l~~LL~~ld~~~~~~~viVIaaTn~~~~Ld 168 (476)
T 2ce7_A 90 VGVGAARVRDLFAQAKAHAPCIVFIDEIDAVGRHRGAG-LGGGHDEREQTLNQLLVEMDGFDSKEGIIVMAATNRPDILD 168 (476)
T ss_dssp TTHHHHHHHHHHHHHHHTCSEEEEEETGGGTCCC----------CHHHHHHHHHHHHHHHSCGGGTEEEEEEESCGGGSC
T ss_pred hcccHHHHHHHHHHHHhcCCCEEEEechhhhhhhcccc-cCcCcHHHHHHHHHHHHHHhccCCCCCEEEEEecCChhhhc
Confidence 99999999999999999999999999999999887643 23567788899999999999988888999999999999999
Q ss_pred hhhhCCCCcceEEEecCCCHHHHHHHHHHHHhcCCCCCCCCCCHHHHHHhCCCCCHHHHHHHHHHHHHHHHhcCCCcccH
Q 007575 486 PALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTTGFTGADLANLVNEAALLAGRLNKVVVEK 565 (597)
Q Consensus 486 ~aLlRpgRFd~~I~v~~Pd~~eR~eILk~~l~~~~~~l~~dvdl~~LA~~t~G~SgaDL~~Lv~eAal~A~r~~~~~It~ 565 (597)
++++||||||+.+.+++|+.++|.+|++.++++. ++.+++++..++..++|++|+||.++|++|++.|.+++...|+.
T Consensus 169 ~allR~gRFd~~i~i~~Pd~~~R~~Il~~~~~~~--~l~~~v~l~~la~~t~G~sgadL~~lv~~Aal~A~~~~~~~I~~ 246 (476)
T 2ce7_A 169 PALLRPGRFDKKIVVDPPDMLGRKKILEIHTRNK--PLAEDVNLEIIAKRTPGFVGADLENLVNEAALLAAREGRDKITM 246 (476)
T ss_dssp GGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTS--CBCTTCCHHHHHHTCTTCCHHHHHHHHHHHHHHHHHTTCSSBCH
T ss_pred hhhcccCcceeEeecCCCCHHHHHHHHHHHHHhC--CCcchhhHHHHHHhcCCCcHHHHHHHHHHHHHHHHHcCCCeecH
Confidence 9999999999999999999999999999999764 66678899999999999999999999999999999988899999
Q ss_pred HHHHHHHHHHhccccccccccchhhh
Q 007575 566 IDFIHAVERSIAVSLSLSLSLSLQAS 591 (597)
Q Consensus 566 ~d~~~Al~~v~~g~~k~s~~ls~q~~ 591 (597)
+||.+|+++++++.++++++++.++.
T Consensus 247 ~dl~~al~~v~~~~~~~~~~~~~~e~ 272 (476)
T 2ce7_A 247 KDFEEAIDRVIAGPARKSLLISPAEK 272 (476)
T ss_dssp HHHHHHHHHHC--------CCCHHHH
T ss_pred HHHHHHHHHHhcCccccchhhhcchh
Confidence 99999999999999988888876543
No 9
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=100.00 E-value=2.9e-43 Score=405.77 Aligned_cols=251 Identities=43% Similarity=0.675 Sum_probs=232.3
Q ss_pred CCCCcccccccCChHHHHHHHHHHHH-hcChhHHhhcCCCCCCceEEeCCCCChHHHHHHHHHHhcCCCeeeechhhhHH
Q 007575 325 QGDTITFADVAGVDEAKEELEEIVEF-LRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFVE 403 (597)
Q Consensus 325 ~~~~vtf~dV~G~de~k~~L~eiv~~-l~~p~~~~~lg~~~p~gVLL~GPPGTGKT~LArAIA~el~~pfi~is~sef~~ 403 (597)
..+.++|+||+|+++++++|++++.+ +++|+.|..+|..+|+|||||||||||||+||+++|++++++|+.++++++.+
T Consensus 197 ~~~~v~~~dIgGl~~~~~~l~e~v~~pl~~p~~f~~~g~~~p~GILL~GPPGTGKT~LAraiA~elg~~~~~v~~~~l~s 276 (806)
T 3cf2_A 197 SLNEVGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMS 276 (806)
T ss_dssp CSSSCCGGGCCSCCTTHHHHHHHHHHHHHCCGGGTSCCCCCCCEEEEECCTTSCHHHHHHHHHTTTTCEEEEEEHHHHHS
T ss_pred cCCCCChhhhcCHHHHHHHHHHHHHHHccCHHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHHhCCeEEEEEhHHhhc
Confidence 45789999999999999999999998 99999999999999999999999999999999999999999999999999999
Q ss_pred HHhhcchHHHHHHHHHHHhcCCeEEEEcCcchhhhhcCCcccccchhHHHHHHHHHHHHhcCCCCCCcEEEEEecCCCCC
Q 007575 404 LYVGMGASRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATNRSDV 483 (597)
Q Consensus 404 ~~vG~~e~~vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~eqtLnqLL~emdg~~~~~~VIVIaaTNrpd~ 483 (597)
+|+|++++.++.+|+.|+.++||||||||||+|+++++.. .++...+++++|+.+||++..+.+|+||++||+++.
T Consensus 277 k~~gese~~lr~lF~~A~~~~PsIIfIDEiDal~~~r~~~----~~~~~~riv~~LL~~mdg~~~~~~V~VIaaTN~~d~ 352 (806)
T 3cf2_A 277 KLAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKT----HGEVERRIVSQLLTLMDGLKQRAHVIVMAATNRPNS 352 (806)
T ss_dssp SCTTHHHHHHHHHHHHHTTSCSEEEEEESGGGTCCTTTTC----CCTTHHHHHHHHHTHHHHCCGGGCEEEEEECSSTTT
T ss_pred ccchHHHHHHHHHHHHHHHcCCeEEEEehhcccccccCCC----CChHHHHHHHHHHHHHhcccccCCEEEEEecCChhh
Confidence 9999999999999999999999999999999999888642 344557899999999999998899999999999999
Q ss_pred CChhhhCCCCcceEEEecCCCHHHHHHHHHHHHhcCCCCCCCCCCHHHHHHhCCCCCHHHHHHHHHHHHHHHHhcC----
Q 007575 484 LDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTTGFTGADLANLVNEAALLAGRLN---- 559 (597)
Q Consensus 484 LD~aLlRpgRFd~~I~v~~Pd~~eR~eILk~~l~~~~~~l~~dvdl~~LA~~t~G~SgaDL~~Lv~eAal~A~r~~---- 559 (597)
||++|+||||||+.|+++.||.++|.+||+.|+++ .++..++++..||..|+||+|+||.++|++|++.|.++.
T Consensus 353 LD~ALrR~GRFd~~I~i~~Pd~~~R~~IL~~~l~~--~~~~~dvdl~~lA~~T~GfsgaDL~~Lv~eA~~~A~~r~~~~i 430 (806)
T 3cf2_A 353 IDPALRRFGRFDREVDIGIPDATGRLEILQIHTKN--MKLADDVDLEQVANETHGHVGADLAALCSEAALQAIRKKMDLI 430 (806)
T ss_dssp SCTTTTSTTSSCEEEECCCCCHHHHHHHHHHTCSS--SEECTTCCHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHHHHHG
T ss_pred cCHHHhCCcccceEEecCCCCHHHHHHHHHHHhcC--CCCCcccCHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhccccc
Confidence 99999999999999999999999999999999865 567789999999999999999999999999999997762
Q ss_pred -------------CCcccHHHHHHHHHHHhccccc
Q 007575 560 -------------KVVVEKIDFIHAVERSIAVSLS 581 (597)
Q Consensus 560 -------------~~~It~~d~~~Al~~v~~g~~k 581 (597)
...|+.+||..|++.+.+...+
T Consensus 431 ~~~~~~~~~e~~~~~~v~~~Df~~Al~~~~ps~~r 465 (806)
T 3cf2_A 431 DLEDETIDAEVMNSLAVTMDDFRWALSQSNPSALR 465 (806)
T ss_dssp GGTCCCCSHHHHHHCEECTTHHHHHHSSSSCCCCC
T ss_pred cccccccchhhhccceeeHHHHHHHHHhCCCcccc
Confidence 1347889999999988776544
No 10
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=100.00 E-value=1.3e-40 Score=367.29 Aligned_cols=267 Identities=57% Similarity=0.890 Sum_probs=245.2
Q ss_pred ccccCCCCcccccccCChHHHHHHHHHHHHhcChhHHhhcCCCCCCceEEeCCCCChHHHHHHHHHHhcCCCeeeechhh
Q 007575 321 KVSEQGDTITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASE 400 (597)
Q Consensus 321 ~~~~~~~~vtf~dV~G~de~k~~L~eiv~~l~~p~~~~~lg~~~p~gVLL~GPPGTGKT~LArAIA~el~~pfi~is~se 400 (597)
+...+.+.++|+||+|++++++++++++.++.++..|..++...|+|+||+||||||||+||+++|++++.+|+.+++++
T Consensus 20 ~~~~~~~~~~f~dv~G~~~~k~~l~~lv~~l~~~~~~~~lg~~ip~GvLL~GppGtGKTtLaraIa~~~~~~~i~i~g~~ 99 (499)
T 2dhr_A 20 RVLTEAPKVTFKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEARVPFITASGSD 99 (499)
T ss_dssp EEECSCCCCCTTSSCSCHHHHHHHHHHHHHHHCGGGTTTTSCCCCSEEEEECSSSSSHHHHHHHHHHHTTCCEEEEEGGG
T ss_pred eeeccCCCCCHHHcCCcHHHHHHHHHHHHHhhchhhhhhccCCCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEEehhH
Confidence 33333488999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHhhcchHHHHHHHHHHHhcCCeEEEEcCcchhhhhcCCcccccchhHHHHHHHHHHHHhcCCCCCCcEEEEEecCC
Q 007575 401 FVELYVGMGASRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATNR 480 (597)
Q Consensus 401 f~~~~vG~~e~~vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~eqtLnqLL~emdg~~~~~~VIVIaaTNr 480 (597)
+.+.++|..++.++.+|+.+....|||+||||||.++..++.. ..+.+++..+++++|+.+|+++.....+++|++||+
T Consensus 100 ~~~~~~g~~~~~v~~lfq~a~~~~p~il~IDEId~l~~~r~~~-~~~~~~e~~~~l~~LL~~Ldg~~~~~~viviAatn~ 178 (499)
T 2dhr_A 100 FVEMFVGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSG-VGGGNDEREQTLNQLLVEMDGFEKDTAIVVMAATNR 178 (499)
T ss_dssp GTSSCTTHHHHHHHHHTTTSSSSSSCEEEEECGGGTCCCSSSS-TTTSSHHHHHHHHHHHHHGGGCCSSCCCEEEECCSC
T ss_pred HHHhhhhhHHHHHHHHHHHHHhcCCCEEEEehHHHHHHhhccC-cCCCcHHHHHHHHHHHHHhcccccCccEEEEEecCC
Confidence 9999999999999999999988889999999999998776532 123567888999999999999988888999999999
Q ss_pred CCCCChhhhCCCCcceEEEecCCCHHHHHHHHHHHHhcCCCCCCCCCCHHHHHHhCCCCCHHHHHHHHHHHHHHHHhcCC
Q 007575 481 SDVLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTTGFTGADLANLVNEAALLAGRLNK 560 (597)
Q Consensus 481 pd~LD~aLlRpgRFd~~I~v~~Pd~~eR~eILk~~l~~~~~~l~~dvdl~~LA~~t~G~SgaDL~~Lv~eAal~A~r~~~ 560 (597)
|+.||++++||||||+++.+++|+.++|.+||+.|++. .++.+++++..+|..++|++|+||.++|++|++.|.+++.
T Consensus 179 p~~LD~aLlr~gRfdr~i~i~~Pd~~~R~~IL~~~~~~--~~l~~dv~l~~lA~~t~G~~gadL~~lv~~Aa~~A~~~~~ 256 (499)
T 2dhr_A 179 PDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHARG--KPLAEDVDLALLAKRTPGFVGADLENLLNEAALLAAREGR 256 (499)
T ss_dssp GGGSCTTTSSTTSSCCEEECCCCCHHHHHHHHHHTTSS--SCCCCSSTTHHHHTTSCSCCHHHHHHHHHHHHHHHTTTCC
T ss_pred hhhcCcccccccccceEEecCCCCHHHHHHHHHHHHhc--CCCChHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhCC
Confidence 99999999999999999999999999999999999854 5777888999999999999999999999999999999888
Q ss_pred CcccHHHHHHHHHHHhccccccccccchhh
Q 007575 561 VVVEKIDFIHAVERSIAVSLSLSLSLSLQA 590 (597)
Q Consensus 561 ~~It~~d~~~Al~~v~~g~~k~s~~ls~q~ 590 (597)
..|+.+||++|+++++++.++++++++.+.
T Consensus 257 ~~It~~dl~~al~~v~~~~~~~~~~~~~~e 286 (499)
T 2dhr_A 257 RKITMKDLEEAADRVMMLPAKKSLVLSPRD 286 (499)
T ss_dssp SSCCSHHHHHHHHHHTTCSSSSCCCCCTTH
T ss_pred CccCHHHHHHHHHHHhcccccccchhhHHH
Confidence 899999999999999999988887777654
No 11
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=100.00 E-value=3.5e-39 Score=323.76 Aligned_cols=253 Identities=62% Similarity=0.936 Sum_probs=228.9
Q ss_pred cCCCCcccccccCChHHHHHHHHHHHHhcChhHHhhcCCCCCCceEEeCCCCChHHHHHHHHHHhcCCCeeeechhhhHH
Q 007575 324 EQGDTITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFVE 403 (597)
Q Consensus 324 ~~~~~vtf~dV~G~de~k~~L~eiv~~l~~p~~~~~lg~~~p~gVLL~GPPGTGKT~LArAIA~el~~pfi~is~sef~~ 403 (597)
+..+..+|+|++|.++++++|.+++.++.++..|..+|...|+++||+||||||||++|+++|++++.||+.++++++.+
T Consensus 4 ~~~~~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~~~~~~~~i~~~~~~~ 83 (257)
T 1lv7_A 4 EDQIKTTFADVAGCDEAKEEVAELVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEAKVPFFTISGSDFVE 83 (257)
T ss_dssp ECSSCCCGGGSCSCHHHHHHTHHHHHHHHCGGGC-----CCCCEEEEECCTTSCHHHHHHHHHHHHTCCEEEECSCSSTT
T ss_pred ccCCCCCHHHhcCcHHHHHHHHHHHHHHhCHHHHHHcCCCCCCeEEEECcCCCCHHHHHHHHHHHcCCCEEEEeHHHHHH
Confidence 34567899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhcchHHHHHHHHHHHhcCCeEEEEcCcchhhhhcCCcccccchhHHHHHHHHHHHHhcCCCCCCcEEEEEecCCCCC
Q 007575 404 LYVGMGASRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATNRSDV 483 (597)
Q Consensus 404 ~~vG~~e~~vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~eqtLnqLL~emdg~~~~~~VIVIaaTNrpd~ 483 (597)
.+.|.+++.++.+|+.+....||++||||+|.+...++... .+..++..+.+++++..|+++....+++||++||+++.
T Consensus 84 ~~~~~~~~~~~~~~~~a~~~~~~il~iDeid~l~~~~~~~~-~~~~~~~~~~~~~ll~~l~~~~~~~~~~vI~~tn~~~~ 162 (257)
T 1lv7_A 84 MFVGVGASRVRDMFEQAKKAAPCIIFIDEIDAVGRQRGAGL-GGGHDEREQTLNQMLVEMDGFEGNEGIIVIAATNRPDV 162 (257)
T ss_dssp SCCCCCHHHHHHHHHHHHTTCSEEEEETTHHHHTCCCSTTS-CCTTCHHHHHHHHHHHHHHTCCSSSCEEEEEEESCTTT
T ss_pred HhhhhhHHHHHHHHHHHHHcCCeeehhhhhhhhccCCCCCc-CCCchHHHHHHHHHHHHhhCcccCCCEEEEEeeCCchh
Confidence 99999999999999999999999999999999998765432 23456677889999999999988889999999999999
Q ss_pred CChhhhCCCCcceEEEecCCCHHHHHHHHHHHHhcCCCCCCCCCCHHHHHHhCCCCCHHHHHHHHHHHHHHHHhcCCCcc
Q 007575 484 LDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTTGFTGADLANLVNEAALLAGRLNKVVV 563 (597)
Q Consensus 484 LD~aLlRpgRFd~~I~v~~Pd~~eR~eILk~~l~~~~~~l~~dvdl~~LA~~t~G~SgaDL~~Lv~eAal~A~r~~~~~I 563 (597)
+|++++|+|||++.+.++.|+.++|.+|++.++.+ .++.+++++..++..++||+++||.++|++|+..|.+++...|
T Consensus 163 l~~~l~r~~rf~~~i~i~~P~~~~r~~il~~~~~~--~~l~~~~~~~~la~~~~G~~~~dl~~l~~~a~~~a~~~~~~~i 240 (257)
T 1lv7_A 163 LDPALLRPGRFDRQVVVGLPDVRGREQILKVHMRR--VPLAPDIDAAIIARGTPGFSGADLANLVNEAALFAARGNKRVV 240 (257)
T ss_dssp SCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTT--SCBCTTCCHHHHHHTCTTCCHHHHHHHHHHHHHHHHHTTCSSB
T ss_pred CCHHHcCCCcCCeEEEeCCCCHHHHHHHHHHHHhc--CCCCccccHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhCCCcc
Confidence 99999999999999999999999999999999865 4667788899999999999999999999999999999999999
Q ss_pred cHHHHHHHHHHHhccc
Q 007575 564 EKIDFIHAVERSIAVS 579 (597)
Q Consensus 564 t~~d~~~Al~~v~~g~ 579 (597)
+.+||++|++++..|.
T Consensus 241 ~~~~~~~a~~~~~~~~ 256 (257)
T 1lv7_A 241 SMVEFEKAKDKIMMGL 256 (257)
T ss_dssp CHHHHHHHHHHHTTCC
T ss_pred cHHHHHHHHHHHhcCC
Confidence 9999999999998775
No 12
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=100.00 E-value=3.2e-40 Score=329.68 Aligned_cols=261 Identities=49% Similarity=0.761 Sum_probs=208.9
Q ss_pred CCcccccccCChHHHHHHHHHHHHhcChhHHhhcCCCCCCceEEeCCCCChHHHHHHHHHHhcCCCeeeechhhhHHHHh
Q 007575 327 DTITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFVELYV 406 (597)
Q Consensus 327 ~~vtf~dV~G~de~k~~L~eiv~~l~~p~~~~~lg~~~p~gVLL~GPPGTGKT~LArAIA~el~~pfi~is~sef~~~~v 406 (597)
|+++|++++|++++++.|++++.++..++.|...|...++++||+||||||||++|+++|++++.+++.++++++.+.+.
T Consensus 1 ~~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~vll~G~~GtGKT~la~~la~~~~~~~~~~~~~~~~~~~~ 80 (262)
T 2qz4_A 1 MGVSFKDVAGMHEAKLEVREFVDYLKSPERFLQLGAKVPKGALLLGPPGCGKTLLAKAVATEAQVPFLAMAGAEFVEVIG 80 (262)
T ss_dssp CCCCTTSSCSCHHHHHHHHHHHHHHHCCC------CCCCCEEEEESCTTSSHHHHHHHHHHHHTCCEEEEETTTTSSSST
T ss_pred CCCCHHHhCCHHHHHHHHHHHHHHHHCHHHHHHcCCCCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEechHHHHhhcc
Confidence 46899999999999999999999999999999999999999999999999999999999999999999999999998888
Q ss_pred hcchHHHHHHHHHHHhcCCeEEEEcCcchhhhhcCCcccccchhHHHHHHHHHHHHhcCCCCCCcEEEEEecCCCCCCCh
Q 007575 407 GMGASRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATNRSDVLDP 486 (597)
Q Consensus 407 G~~e~~vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~eqtLnqLL~emdg~~~~~~VIVIaaTNrpd~LD~ 486 (597)
+.+...++.+|..+....|+||||||+|.+...+........+.+....+++++..+++.....+++||++||.++.+|+
T Consensus 81 ~~~~~~~~~~~~~a~~~~~~vl~iDeid~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~vi~~tn~~~~ld~ 160 (262)
T 2qz4_A 81 GLGAARVRSLFKEARARAPCIVYIDEIDAVGKKRSTTMSGFSNTEEEQTLNQLLVEMDGMGTTDHVIVLASTNRADILDG 160 (262)
T ss_dssp THHHHHHHHHHHHHHHTCSEEEEEECC-------------------CHHHHHHHHHHHTCCTTCCEEEEEEESCGGGGGS
T ss_pred ChhHHHHHHHHHHHHhcCCeEEEEeCcchhhccccccccCccchhHHHHHHHHHHHhhCcCCCCCEEEEecCCChhhcCH
Confidence 99999999999999999999999999999987764432222344556788999999998888889999999999999999
Q ss_pred hhhCCCCcceEEEecCCCHHHHHHHHHHHHhcCCCCCCCCCCHHHHHHhCCCCCHHHHHHHHHHHHHHHHhcCCCcccHH
Q 007575 487 ALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTTGFTGADLANLVNEAALLAGRLNKVVVEKI 566 (597)
Q Consensus 487 aLlRpgRFd~~I~v~~Pd~~eR~eILk~~l~~~~~~l~~dvdl~~LA~~t~G~SgaDL~~Lv~eAal~A~r~~~~~It~~ 566 (597)
+++|+|||+..++++.|+.++|.+|++.++...+.....++.+..++..+.|++++||.++|++|+..|.+++...|+.+
T Consensus 161 ~l~~~~R~~~~i~i~~p~~~~r~~il~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~l~~l~~~a~~~a~~~~~~~i~~~ 240 (262)
T 2qz4_A 161 ALMRPGRLDRHVFIDLPTLQERREIFEQHLKSLKLTQSSTFYSQRLAELTPGFSGADIANICNEAALHAAREGHTSVHTL 240 (262)
T ss_dssp GGGSTTSCCEEEECCSCCHHHHHHHHHHHHHHTTCCBTHHHHHHHHHHTCTTCCHHHHHHHHHHHHTC--------CCBC
T ss_pred HHhcCCcCCeEEEeCCcCHHHHHHHHHHHHHhCCCCcchhhHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHcCCCCCCHH
Confidence 99999999999999999999999999999987655444444458899999999999999999999999999888999999
Q ss_pred HHHHHHHHHhccccccccccc
Q 007575 567 DFIHAVERSIAVSLSLSLSLS 587 (597)
Q Consensus 567 d~~~Al~~v~~g~~k~s~~ls 587 (597)
||.+|++++..+..+++.+++
T Consensus 241 d~~~a~~~~~~~~~~~~~~~~ 261 (262)
T 2qz4_A 241 NFEYAVERVLAGTAKKSKILS 261 (262)
T ss_dssp CHHHHHHHHHHHHHCC-----
T ss_pred HHHHHHHHhccChhhhhHhhc
Confidence 999999999999998887765
No 13
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=100.00 E-value=7e-40 Score=335.36 Aligned_cols=253 Identities=41% Similarity=0.654 Sum_probs=212.2
Q ss_pred CCCCcccccccCChHHHHHHHHHHH-HhcChhHHhhcCCCCCCceEEeCCCCChHHHHHHHHHHhcCCCeeeechhhhHH
Q 007575 325 QGDTITFADVAGVDEAKEELEEIVE-FLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFVE 403 (597)
Q Consensus 325 ~~~~vtf~dV~G~de~k~~L~eiv~-~l~~p~~~~~lg~~~p~gVLL~GPPGTGKT~LArAIA~el~~pfi~is~sef~~ 403 (597)
+.|.++|+||+|++++|++|++.+. .+.++..|..++...|+|++|+||||||||+|++++|++++.+++.+++.++..
T Consensus 3 ~~~~~~~~di~g~~~~~~~l~~~i~~~~~~~~~l~~~~l~~~~GvlL~Gp~GtGKTtLakala~~~~~~~i~i~g~~l~~ 82 (274)
T 2x8a_A 3 TVPNVTWADIGALEDIREELTMAILAPVRNPDQFKALGLVTPAGVLLAGPPGCGKTLLAKAVANESGLNFISVKGPELLN 82 (274)
T ss_dssp ---------CCHHHHHHHHHHHHHTHHHHSHHHHHHTTCCCCSEEEEESSTTSCHHHHHHHHHHHTTCEEEEEETTTTCS
T ss_pred CCCCCCHHHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCCeEEEECCCCCcHHHHHHHHHHHcCCCEEEEEcHHHHh
Confidence 3578999999999999999998654 489999999999999999999999999999999999999999999999999988
Q ss_pred HHhhcchHHHHHHHHHHHhcCCeEEEEcCcchhhhhcCCcccccchhHHHHHHHHHHHHhcCCCCCCcEEEEEecCCCCC
Q 007575 404 LYVGMGASRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATNRSDV 483 (597)
Q Consensus 404 ~~vG~~e~~vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~eqtLnqLL~emdg~~~~~~VIVIaaTNrpd~ 483 (597)
.+.|..++.++.+|+.++...|||+|+||+|.++..++.. ..+...+.+++++.+|++......++++++||+|+.
T Consensus 83 ~~~~~~~~~i~~vf~~a~~~~p~i~~~Deid~~~~~r~~~----~~~~~~~~~~~~l~~Lsgg~~~~~~i~ia~tn~p~~ 158 (274)
T 2x8a_A 83 MYVGESERAVRQVFQRAKNSAPCVIFFDEVDALCPRRSDR----ETGASVRVVNQLLTEMDGLEARQQVFIMAATNRPDI 158 (274)
T ss_dssp STTHHHHHHHHHHHHHHHHTCSEEEEEETCTTTCC-------------CTTHHHHHHHHHHTCCSTTCEEEEEEESCGGG
T ss_pred hhhhHHHHHHHHHHHHHHhcCCCeEeeehhhhhhcccCCC----cchHHHHHHHHHHHhhhcccccCCEEEEeecCChhh
Confidence 8899999999999999999999999999999987655321 112234678999999999988889999999999999
Q ss_pred CChhhhCCCCcceEEEecCCCHHHHHHHHHHHHhc-CCCCCCCCCCHHHHHHhC--CCCCHHHHHHHHHHHHHHHHhc--
Q 007575 484 LDPALRRPGRFDRVVMVETPDKIGREAILKVHVSK-KELPLAKDIDLGDIASMT--TGFTGADLANLVNEAALLAGRL-- 558 (597)
Q Consensus 484 LD~aLlRpgRFd~~I~v~~Pd~~eR~eILk~~l~~-~~~~l~~dvdl~~LA~~t--~G~SgaDL~~Lv~eAal~A~r~-- 558 (597)
||++++||||||+.|++++|+.++|.+||+.++++ ...++..+++++.+|..+ +||||+||.++|++|++.|.++
T Consensus 159 LD~al~r~gRfd~~i~~~~P~~~~r~~il~~~~~~~~~~~~~~~~~~~~la~~~~~~g~sgadl~~l~~~a~~~a~~~~~ 238 (274)
T 2x8a_A 159 IDPAILRPGRLDKTLFVGLPPPADRLAILKTITKNGTKPPLDADVNLEAIAGDLRCDCYTGADLSALVREASICALRQEM 238 (274)
T ss_dssp SCHHHHSTTSSCEEEECCSCCHHHHHHHHHHHTTTTBTTBBCTTCCHHHHHTCSGGGSCCHHHHHHHHHHHHHHHHHHHC
T ss_pred CCHhhcCcccCCeEEEeCCcCHHHHHHHHHHHHhcccCCCCccccCHHHHHHhhccCCcCHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999864 234567789999999875 5999999999999999999875
Q ss_pred ---------CCCcccHHHHHHHHHHHhccccc
Q 007575 559 ---------NKVVVEKIDFIHAVERSIAVSLS 581 (597)
Q Consensus 559 ---------~~~~It~~d~~~Al~~v~~g~~k 581 (597)
+...|+++||++|++++.+...+
T Consensus 239 ~~~~~~~~~~~~~i~~~df~~al~~~~ps~~~ 270 (274)
T 2x8a_A 239 ARQKSGNEKGELKVSHKHFEEAFKKVRSSISK 270 (274)
T ss_dssp -----------CCBCHHHHHHHHTTCCCCC--
T ss_pred hhccccccccCCeecHHHHHHHHHHhcCCCCh
Confidence 23469999999999998776544
No 14
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=100.00 E-value=9e-39 Score=330.12 Aligned_cols=253 Identities=40% Similarity=0.732 Sum_probs=225.4
Q ss_pred ccCCCCcccccccCChHHHHHHHHHHHH-hcChhHHhhcCCCCCCceEEeCCCCChHHHHHHHHHHhcCCCeeeechhhh
Q 007575 323 SEQGDTITFADVAGVDEAKEELEEIVEF-LRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEF 401 (597)
Q Consensus 323 ~~~~~~vtf~dV~G~de~k~~L~eiv~~-l~~p~~~~~lg~~~p~gVLL~GPPGTGKT~LArAIA~el~~pfi~is~sef 401 (597)
..+.|.++|+||+|++++++.|.+.+.+ +.+++.|..+|..+++++||+||||||||++|+++|++++.+|+.++++++
T Consensus 6 ~~~~~~~~~~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~Gp~GtGKT~la~ala~~~~~~~i~v~~~~l 85 (301)
T 3cf0_A 6 VVEVPQVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPEL 85 (301)
T ss_dssp CEECCCCCGGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCSEEEEECSSSSSHHHHHHHHHHHTTCEEEEECHHHH
T ss_pred cccCCCCCHHHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCceEEEECCCCcCHHHHHHHHHHHhCCCEEEEEhHHH
Confidence 3456889999999999999999999987 889999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhcchHHHHHHHHHHHhcCCeEEEEcCcchhhhhcCCcccccchhHHHHHHHHHHHHhcCCCCCCcEEEEEecCCC
Q 007575 402 VELYVGMGASRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATNRS 481 (597)
Q Consensus 402 ~~~~vG~~e~~vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~eqtLnqLL~emdg~~~~~~VIVIaaTNrp 481 (597)
...++|..++.++.+|..+....||||||||||.+...++.... .......+++++|+..|+++....+++||++||++
T Consensus 86 ~~~~~g~~~~~~~~~f~~a~~~~p~il~iDEid~l~~~~~~~~~-~~~~~~~~~~~~lL~~l~~~~~~~~v~vi~atn~~ 164 (301)
T 3cf0_A 86 LTMWFGESEANVREIFDKARQAAPCVLFFDELDSIAKARGGNIG-DGGGAADRVINQILTEMDGMSTKKNVFIIGATNRP 164 (301)
T ss_dssp HHHHHTTCTTHHHHHHHHHHHTCSEEEEECSTTHHHHHHTTTTC-CSSCSCCHHHHHHHHHHHSSCTTSSEEEEEEESCG
T ss_pred HhhhcCchHHHHHHHHHHHHhcCCeEEEEEChHHHhhccCCCcC-CcchHHHHHHHHHHHHhhcccCCCCEEEEEecCCc
Confidence 99999999999999999999999999999999999987653211 11223346789999999998888899999999999
Q ss_pred CCCChhhhCCCCcceEEEecCCCHHHHHHHHHHHHhcCCCCCCCCCCHHHHHHhCCCCCHHHHHHHHHHHHHHHHhcC--
Q 007575 482 DVLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTTGFTGADLANLVNEAALLAGRLN-- 559 (597)
Q Consensus 482 d~LD~aLlRpgRFd~~I~v~~Pd~~eR~eILk~~l~~~~~~l~~dvdl~~LA~~t~G~SgaDL~~Lv~eAal~A~r~~-- 559 (597)
+.||++++|+|||+..++++.|+.++|.+|++.++++. ++..+++++.++..+.||+|+||.++|++|++.|.++.
T Consensus 165 ~~ld~al~r~gRf~~~i~i~~p~~~~r~~il~~~l~~~--~~~~~~~~~~la~~~~g~sg~dl~~l~~~a~~~a~~~~~~ 242 (301)
T 3cf0_A 165 DIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKS--PVAKDVDLEFLAKMTNGFSGADLTEICQRACKLAIRESIE 242 (301)
T ss_dssp GGSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTS--CBCSSCCHHHHHHTCSSCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccChHHhcCCccceEEecCCcCHHHHHHHHHHHHccC--CCCccchHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999764 45578899999999999999999999999999887542
Q ss_pred -----------------------CCcccHHHHHHHHHHHhcc
Q 007575 560 -----------------------KVVVEKIDFIHAVERSIAV 578 (597)
Q Consensus 560 -----------------------~~~It~~d~~~Al~~v~~g 578 (597)
...|+.+||+.|++++-+.
T Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~al~~~~~s 284 (301)
T 3cf0_A 243 SEIRRERERQTNPSAMEVEEDDPVPEIRRDHFEEAMRFARRS 284 (301)
T ss_dssp HHC--------------------CCCBCHHHHHHHHTTCCCS
T ss_pred hhhhhhhhcccccccccccccccCCccCHHHHHHHHHHcCCC
Confidence 1368999999999987543
No 15
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=100.00 E-value=2.2e-37 Score=323.49 Aligned_cols=227 Identities=37% Similarity=0.633 Sum_probs=203.7
Q ss_pred cCCCCcccccccCChHHHHHHHHHHHH-hcChhHHhhcCCCCCCceEEeCCCCChHHHHHHHHHHhc-CCCeeeechhhh
Q 007575 324 EQGDTITFADVAGVDEAKEELEEIVEF-LRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEA-EVPFISCSASEF 401 (597)
Q Consensus 324 ~~~~~vtf~dV~G~de~k~~L~eiv~~-l~~p~~~~~lg~~~p~gVLL~GPPGTGKT~LArAIA~el-~~pfi~is~sef 401 (597)
.+.|+++|+||+|++++|+.|++.+.+ +++++.|.. +..+++++||+||||||||+||+++|+++ +.+|+.++++++
T Consensus 4 ~~~~~~~~~di~G~~~~k~~l~~~v~~p~~~~~~~~~-~~~~~~~iLL~GppGtGKT~la~ala~~~~~~~~~~i~~~~l 82 (322)
T 1xwi_A 4 IERPNVKWSDVAGLEGAKEALKEAVILPIKFPHLFTG-KRTPWRGILLFGPPGTGKSYLAKAVATEANNSTFFSISSSDL 82 (322)
T ss_dssp EECCCCCGGGSCSCHHHHHHHHHHHHHHHHCGGGSCT-TCCCCSEEEEESSSSSCHHHHHHHHHHHTTSCEEEEEECCSS
T ss_pred ecCCCCCHHHhcCHHHHHHHHHHHHHHHHhCHHHHhC-CCCCCceEEEECCCCccHHHHHHHHHHHcCCCcEEEEEhHHH
Confidence 356789999999999999999999887 778877763 35678999999999999999999999999 899999999999
Q ss_pred HHHHhhcchHHHHHHHHHHHhcCCeEEEEcCcchhhhhcCCcccccchhHHHHHHHHHHHHhcCCCC-CCcEEEEEecCC
Q 007575 402 VELYVGMGASRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDS-NSAVIVLGATNR 480 (597)
Q Consensus 402 ~~~~vG~~e~~vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~eqtLnqLL~emdg~~~-~~~VIVIaaTNr 480 (597)
...++|.+++.++.+|..++...||||||||||.+...++.. ..+...+.+++|+..|+++.. ..+++||++||+
T Consensus 83 ~~~~~g~~~~~~~~lf~~a~~~~~~vl~iDEid~l~~~~~~~----~~~~~~~~~~~ll~~ld~~~~~~~~v~vI~atn~ 158 (322)
T 1xwi_A 83 VSKWLGESEKLVKNLFQLARENKPSIIFIDEIDSLCGSRSEN----ESEAARRIKTEFLVQMQGVGVDNDGILVLGATNI 158 (322)
T ss_dssp CCSSCCSCHHHHHHHHHHHHHTSSEEEEEETTTGGGCCSSSC----CTTHHHHHHHHHHHHHHCSSSCCTTEEEEEEESC
T ss_pred HhhhhhHHHHHHHHHHHHHHhcCCcEEEeecHHHhccccccc----cchHHHHHHHHHHHHHhcccccCCCEEEEEecCC
Confidence 999999999999999999999999999999999999877542 345667889999999999863 678999999999
Q ss_pred CCCCChhhhCCCCcceEEEecCCCHHHHHHHHHHHHhcCCCCCCCCCCHHHHHHhCCCCCHHHHHHHHHHHHHHHHhc
Q 007575 481 SDVLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTTGFTGADLANLVNEAALLAGRL 558 (597)
Q Consensus 481 pd~LD~aLlRpgRFd~~I~v~~Pd~~eR~eILk~~l~~~~~~l~~dvdl~~LA~~t~G~SgaDL~~Lv~eAal~A~r~ 558 (597)
++.+|++++| ||+..+++++|+.++|.+|++.++...+..+ .+.+++.|++.+.||+|+||.++|++|++.|.++
T Consensus 159 ~~~ld~al~r--Rf~~~i~i~~P~~~~r~~il~~~l~~~~~~l-~~~~l~~la~~t~G~sgadl~~l~~~A~~~a~r~ 233 (322)
T 1xwi_A 159 PWVLDSAIRR--RFEKRIYIPLPEPHARAAMFKLHLGTTQNSL-TEADFRELGRKTDGYSGADISIIVRDALMQPVRK 233 (322)
T ss_dssp TTTSCHHHHH--TCCEEEECCCCCHHHHHHHHHHHHTTCCBCC-CHHHHHHHHHTCTTCCHHHHHHHHHHHHTHHHHH
T ss_pred cccCCHHHHh--hcCeEEEeCCcCHHHHHHHHHHHHhcCCCCC-CHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHH
Confidence 9999999999 9999999999999999999999997654433 4567999999999999999999999999988764
No 16
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=100.00 E-value=1e-36 Score=309.21 Aligned_cols=253 Identities=47% Similarity=0.768 Sum_probs=232.4
Q ss_pred cCCCCcccccccCChHHHHHHHHHHHH-hcChhHHhhcCCCCCCceEEeCCCCChHHHHHHHHHHhcCCCeeeechhhhH
Q 007575 324 EQGDTITFADVAGVDEAKEELEEIVEF-LRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFV 402 (597)
Q Consensus 324 ~~~~~vtf~dV~G~de~k~~L~eiv~~-l~~p~~~~~lg~~~p~gVLL~GPPGTGKT~LArAIA~el~~pfi~is~sef~ 402 (597)
...+.++|++++|.+++++.|.+.+.. +..++.|...|...+.++||+||||||||++|+++|++++.+++.++++++.
T Consensus 9 ~~~~~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~G~~GtGKT~la~~la~~~~~~~~~v~~~~~~ 88 (285)
T 3h4m_A 9 DERPNVRYEDIGGLEKQMQEIREVVELPLKHPELFEKVGIEPPKGILLYGPPGTGKTLLAKAVATETNATFIRVVGSELV 88 (285)
T ss_dssp ESSCCCCGGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHCCCCCSEEEEESSSSSSHHHHHHHHHHHTTCEEEEEEGGGGC
T ss_pred cCCCCCCHHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEehHHHH
Confidence 456789999999999999999999877 7899999999999999999999999999999999999999999999999999
Q ss_pred HHHhhcchHHHHHHHHHHHhcCCeEEEEcCcchhhhhcCCcccccchhHHHHHHHHHHHHhcCCCCCCcEEEEEecCCCC
Q 007575 403 ELYVGMGASRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATNRSD 482 (597)
Q Consensus 403 ~~~vG~~e~~vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~eqtLnqLL~emdg~~~~~~VIVIaaTNrpd 482 (597)
..+.|.....++.+|..+....|+||||||+|.+..++.+.. .....+....+.+++..++++....+++||+|||.++
T Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~-~~~~~~~~~~l~~ll~~~~~~~~~~~~~vI~ttn~~~ 167 (285)
T 3h4m_A 89 KKFIGEGASLVKDIFKLAKEKAPSIIFIDEIDAIAAKRTDAL-TGGDREVQRTLMQLLAEMDGFDARGDVKIIGATNRPD 167 (285)
T ss_dssp CCSTTHHHHHHHHHHHHHHHTCSEEEEEETTHHHHBCCSSSC-CGGGGHHHHHHHHHHHHHHTTCSSSSEEEEEECSCGG
T ss_pred HhccchHHHHHHHHHHHHHHcCCeEEEEECHHHhcccCcccc-CCccHHHHHHHHHHHHHhhCCCCCCCEEEEEeCCCch
Confidence 999999999999999999999999999999999988765432 2345567788899999999888888999999999999
Q ss_pred CCChhhhCCCCcceEEEecCCCHHHHHHHHHHHHhcCCCCCCCCCCHHHHHHhCCCCCHHHHHHHHHHHHHHHHhcCCCc
Q 007575 483 VLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTTGFTGADLANLVNEAALLAGRLNKVV 562 (597)
Q Consensus 483 ~LD~aLlRpgRFd~~I~v~~Pd~~eR~eILk~~l~~~~~~l~~dvdl~~LA~~t~G~SgaDL~~Lv~eAal~A~r~~~~~ 562 (597)
.+|++++|++||+..+.++.|+.++|.+|++.++... .+..++++..++..+.|++++||.++|++|...|.+++...
T Consensus 168 ~l~~~l~~~~Rf~~~i~~~~p~~~~r~~il~~~~~~~--~~~~~~~~~~l~~~~~g~~~~~i~~l~~~a~~~a~~~~~~~ 245 (285)
T 3h4m_A 168 ILDPAILRPGRFDRIIEVPAPDEKGRLEILKIHTRKM--NLAEDVNLEEIAKMTEGCVGAELKAICTEAGMNAIRELRDY 245 (285)
T ss_dssp GBCHHHHSTTSEEEEEECCCCCHHHHHHHHHHHHTTS--CBCTTCCHHHHHHHCTTCCHHHHHHHHHHHHHHHHHTTCSS
T ss_pred hcCHHHcCCCcCCeEEEECCCCHHHHHHHHHHHHhcC--CCCCcCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhccCc
Confidence 9999999999999999999999999999999998654 45567789999999999999999999999999999999999
Q ss_pred ccHHHHHHHHHHHhccc
Q 007575 563 VEKIDFIHAVERSIAVS 579 (597)
Q Consensus 563 It~~d~~~Al~~v~~g~ 579 (597)
|+.+||.+|++++....
T Consensus 246 I~~~d~~~al~~~~~~~ 262 (285)
T 3h4m_A 246 VTMDDFRKAVEKIMEKK 262 (285)
T ss_dssp BCHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHhcc
Confidence 99999999999998654
No 17
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=100.00 E-value=4.8e-36 Score=300.45 Aligned_cols=247 Identities=59% Similarity=0.930 Sum_probs=220.8
Q ss_pred ccCCCCcccccccCChHHHHHHHHHHHHhcChhHHhhcCCCCCCceEEeCCCCChHHHHHHHHHHhcCCCeeeechhhhH
Q 007575 323 SEQGDTITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFV 402 (597)
Q Consensus 323 ~~~~~~vtf~dV~G~de~k~~L~eiv~~l~~p~~~~~lg~~~p~gVLL~GPPGTGKT~LArAIA~el~~pfi~is~sef~ 402 (597)
..+.|.++|+|++|.++++.++++++..+..+..+...+...|+|++|+||||||||+|+++++++++.+++.+++.++.
T Consensus 7 ~~~~~~~~~~~i~g~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~g~ll~G~~G~GKTtl~~~i~~~~~~~~i~~~~~~~~ 86 (254)
T 1ixz_A 7 LTEAPKVTFKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEARVPFITASGSDFV 86 (254)
T ss_dssp -CCCCSCCGGGCCSCHHHHHHHHHHHHHHHCHHHHHHTTCCCCSEEEEECCTTSSHHHHHHHHHHHTTCCEEEEEHHHHH
T ss_pred ccCCCCCCHHHhCCcHHHHHHHHHHHHHHHCHHHHHHcCCCCCCeEEEECCCCCCHHHHHHHHHHHhCCCEEEeeHHHHH
Confidence 34567899999999999999999999998888999999999999999999999999999999999999999999999998
Q ss_pred HHHhhcchHHHHHHHHHHHhcCCeEEEEcCcchhhhhcCCcccccchhHHHHHHHHHHHHhcCCCCCCcEEEEEecCCCC
Q 007575 403 ELYVGMGASRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATNRSD 482 (597)
Q Consensus 403 ~~~vG~~e~~vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~eqtLnqLL~emdg~~~~~~VIVIaaTNrpd 482 (597)
..+.+...+.++.+|+.+....|+++||||+|.++..++.. .....++..+.+++++.+|++......++++++||+|+
T Consensus 87 ~~~~~~~~~~i~~~~~~~~~~~~~i~~~Deid~l~~~~~~~-~~~~~~~~~~~~~~ll~~l~g~~~~~~~i~~a~t~~p~ 165 (254)
T 1ixz_A 87 EMFVGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSG-VGGGNDEREQTLNQLLVEMDGFEKDTAIVVMAATNRPD 165 (254)
T ss_dssp HSCTTHHHHHHHHHHHHHTTSSSEEEEEETHHHHHC----------CHHHHHHHHHHHHHHHTCCTTCCEEEEEEESCGG
T ss_pred HHHhhHHHHHHHHHHHHHHhcCCeEEEehhhhhhhcccCcc-ccccchHHHHHHHHHHHHHhCCCCCCCEEEEEccCCch
Confidence 88888888889999999988889999999999998765431 12245667788999999999988888899999999999
Q ss_pred CCChhhhCCCCcceEEEecCCCHHHHHHHHHHHHhcCCCCCCCCCCHHHHHHhCCCCCHHHHHHHHHHHHHHHHhcCCCc
Q 007575 483 VLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTTGFTGADLANLVNEAALLAGRLNKVV 562 (597)
Q Consensus 483 ~LD~aLlRpgRFd~~I~v~~Pd~~eR~eILk~~l~~~~~~l~~dvdl~~LA~~t~G~SgaDL~~Lv~eAal~A~r~~~~~ 562 (597)
.+|++++|++||++.++++.|+.++|.+|++.+++. .++.+++++..++..++|++++||.++|++|+..|.+++...
T Consensus 166 ~ld~~l~r~~rf~~~i~i~~p~~~~r~~il~~~~~~--~~~~~~~~~~~la~~~~G~~~~dl~~~~~~a~~~a~~~~~~~ 243 (254)
T 1ixz_A 166 ILDPALLRPGRFDRQIAIDAPDVKGREQILRIHARG--KPLAEDVDLALLAKRTPGFVGADLENLLNEAALLAAREGRRK 243 (254)
T ss_dssp GSCGGGGSTTSSCEEEECCSCCHHHHHHHHHHHHTT--SCBCTTCCHHHHHHTCTTCCHHHHHHHHHHHHHHHHHTTCSS
T ss_pred hCCHHHcCCCcCCeEEeeCCcCHHHHHHHHHHHHcC--CCCCcccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcCCC
Confidence 999999999999999999999999999999988854 567788899999999999999999999999999999988889
Q ss_pred ccHHHHHHHH
Q 007575 563 VEKIDFIHAV 572 (597)
Q Consensus 563 It~~d~~~Al 572 (597)
|+.+||++|+
T Consensus 244 I~~~dl~~a~ 253 (254)
T 1ixz_A 244 ITMKDLEEAA 253 (254)
T ss_dssp BCHHHHHHHT
T ss_pred cCHHHHHHHh
Confidence 9999999885
No 18
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=100.00 E-value=3.1e-37 Score=321.28 Aligned_cols=249 Identities=35% Similarity=0.579 Sum_probs=216.5
Q ss_pred ccCCCCcccccccCChHHHHHHHHHHHH-hcChhHHhhcCCCCCCceEEeCCCCChHHHHHHHHHHhcCCCeeeechhhh
Q 007575 323 SEQGDTITFADVAGVDEAKEELEEIVEF-LRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEF 401 (597)
Q Consensus 323 ~~~~~~vtf~dV~G~de~k~~L~eiv~~-l~~p~~~~~lg~~~p~gVLL~GPPGTGKT~LArAIA~el~~pfi~is~sef 401 (597)
..+.|+++|+||+|++++++.|.+.+.+ +..+..|.. +..+++++||+||||||||++|+++|++++.+|+.++++++
T Consensus 9 ~~~~~~~~~~di~G~~~~~~~l~~~i~~~~~~~~~~~~-~~~~~~~vLl~GppGtGKT~la~aia~~~~~~~~~v~~~~l 87 (322)
T 3eie_A 9 LSEKPNVKWEDVAGLEGAKEALKEAVILPVKFPHLFKG-NRKPTSGILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDL 87 (322)
T ss_dssp EEECCCCCGGGSCSCHHHHHHHHHHTHHHHHCGGGCCT-TCCCCCEEEEECSSSSCHHHHHHHHHHHHTCEEEEEEHHHH
T ss_pred eecCCCCCHHHhcChHHHHHHHHHHHHHHHhCHHHHhc-CCCCCCeEEEECCCCCcHHHHHHHHHHHHCCCEEEEchHHH
Confidence 4567889999999999999999998877 666766655 56778999999999999999999999999999999999999
Q ss_pred HHHHhhcchHHHHHHHHHHHhcCCeEEEEcCcchhhhhcCCcccccchhHHHHHHHHHHHHhcCCC-CCCcEEEEEecCC
Q 007575 402 VELYVGMGASRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFD-SNSAVIVLGATNR 480 (597)
Q Consensus 402 ~~~~vG~~e~~vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~eqtLnqLL~emdg~~-~~~~VIVIaaTNr 480 (597)
...++|..+..++.+|..++...|+||||||||.+...++.. .++...++.++|+..|+++. ...+++||++||+
T Consensus 88 ~~~~~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~~~~~----~~~~~~~~~~~ll~~l~~~~~~~~~v~vi~atn~ 163 (322)
T 3eie_A 88 VSKWMGESEKLVKQLFAMARENKPSIIFIDQVDALTGTRGEG----ESEASRRIKTELLVQMNGVGNDSQGVLVLGATNI 163 (322)
T ss_dssp HTTTGGGHHHHHHHHHHHHHHTSSEEEEEECGGGGSCC----------CCTHHHHHHHHHHHGGGGTSCCCEEEEEEESC
T ss_pred hhcccchHHHHHHHHHHHHHhcCCeEEEechhhhhhccCCCC----cchHHHHHHHHHHHHhccccccCCceEEEEecCC
Confidence 999999999999999999999999999999999998776432 33445678899999999884 4678999999999
Q ss_pred CCCCChhhhCCCCcceEEEecCCCHHHHHHHHHHHHhcCCCCCCCCCCHHHHHHhCCCCCHHHHHHHHHHHHHHHHhcCC
Q 007575 481 SDVLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTTGFTGADLANLVNEAALLAGRLNK 560 (597)
Q Consensus 481 pd~LD~aLlRpgRFd~~I~v~~Pd~~eR~eILk~~l~~~~~~l~~dvdl~~LA~~t~G~SgaDL~~Lv~eAal~A~r~~~ 560 (597)
++.||++++| ||+..+++++|+.++|.+|++.++.+....+ .+.+++.|+..+.||+|+||.++|++|++.|.++..
T Consensus 164 ~~~ld~al~~--Rf~~~i~~~~p~~~~r~~il~~~~~~~~~~~-~~~~l~~la~~t~g~sg~di~~l~~~a~~~a~r~~~ 240 (322)
T 3eie_A 164 PWQLDSAIRR--RFERRIYIPLPDLAARTTMFEINVGDTPCVL-TKEDYRTLGAMTEGYSGSDIAVVVKDALMQPIRKIQ 240 (322)
T ss_dssp GGGSCHHHHH--HCCEEEECCCCCHHHHHHHHHHHHTTCCCCC-CHHHHHHHHHTTTTCCHHHHHHHHHHHTTHHHHHHH
T ss_pred hhhCCHHHHc--ccCeEEEeCCCCHHHHHHHHHHHhccCCCCC-CHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999 9999999999999999999999998754444 345799999999999999999999999998877521
Q ss_pred -------------------------------------------CcccHHHHHHHHHHHhccc
Q 007575 561 -------------------------------------------VVVEKIDFIHAVERSIAVS 579 (597)
Q Consensus 561 -------------------------------------------~~It~~d~~~Al~~v~~g~ 579 (597)
..|+++||.+|++.+.+..
T Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~it~~df~~al~~~~ps~ 302 (322)
T 3eie_A 241 SATHFKDVSTEDDETRKLTPCSPGDDGAIEMSWTDIEADELKEPDLTIKDFLKAIKSTRPTV 302 (322)
T ss_dssp HCEEEEECC----CCCCEEECCSSCTTEEEEEGGGSCSSCBCCCCCCHHHHHHHHHHSCCSS
T ss_pred hhhhhhhhccccccccccccccccccccccccccccccccccCCCCCHHHHHHHHHhcCCCC
Confidence 3499999999999876654
No 19
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=100.00 E-value=3.7e-36 Score=318.17 Aligned_cols=248 Identities=35% Similarity=0.580 Sum_probs=210.5
Q ss_pred cCCCCcccccccCChHHHHHHHHHHHH-hcChhHHhhcCCCCCCceEEeCCCCChHHHHHHHHHHhcCCCeeeechhhhH
Q 007575 324 EQGDTITFADVAGVDEAKEELEEIVEF-LRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFV 402 (597)
Q Consensus 324 ~~~~~vtf~dV~G~de~k~~L~eiv~~-l~~p~~~~~lg~~~p~gVLL~GPPGTGKT~LArAIA~el~~pfi~is~sef~ 402 (597)
...+.++|+||+|++++++.|.+.+.+ +..+..|.. +..+++++||+||||||||+||+++|++++.+|+.++++++.
T Consensus 43 ~~~~~~~~~di~G~~~~~~~l~~~v~~~~~~~~~~~~-~~~~~~~iLL~GppGtGKT~la~ala~~~~~~~~~v~~~~l~ 121 (355)
T 2qp9_X 43 SEKPNVKWEDVAGLEGAKEALKEAVILPVKFPHLFKG-NRKPTSGILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDLV 121 (355)
T ss_dssp ----CCCGGGSCCGGGHHHHHHHHTHHHHHCGGGGCS-SCCCCCCEEEECSTTSCHHHHHHHHHHHHTCEEEEEEHHHHH
T ss_pred ccCCCCCHHHhCCHHHHHHHHHHHHHHHHhCHHHHhc-CCCCCceEEEECCCCCcHHHHHHHHHHHhCCCEEEeeHHHHh
Confidence 345789999999999999999999877 677777765 667889999999999999999999999999999999999999
Q ss_pred HHHhhcchHHHHHHHHHHHhcCCeEEEEcCcchhhhhcCCcccccchhHHHHHHHHHHHHhcCCCC-CCcEEEEEecCCC
Q 007575 403 ELYVGMGASRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDS-NSAVIVLGATNRS 481 (597)
Q Consensus 403 ~~~vG~~e~~vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~eqtLnqLL~emdg~~~-~~~VIVIaaTNrp 481 (597)
..++|..+..++.+|..++...||||||||||.+...++. +.++...+++++|+..|+++.. ..+++||++||++
T Consensus 122 ~~~~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~r~~----~~~~~~~~~~~~ll~~l~~~~~~~~~v~vI~atn~~ 197 (355)
T 2qp9_X 122 SKWMGESEKLVKQLFAMARENKPSIIFIDQVDALTGTRGE----GESEASRRIKTELLVQMNGVGNDSQGVLVLGATNIP 197 (355)
T ss_dssp SCC---CHHHHHHHHHHHHHTSSEEEEEECGGGGTC----------CTHHHHHHHHHHHHHHHCC---CCEEEEEEESCG
T ss_pred hhhcchHHHHHHHHHHHHHHcCCeEEEEechHhhcccCCC----CcchHHHHHHHHHHHHhhcccccCCCeEEEeecCCc
Confidence 9999999999999999999999999999999999877653 2345667788999999998764 5689999999999
Q ss_pred CCCChhhhCCCCcceEEEecCCCHHHHHHHHHHHHhcCCCCCCCCCCHHHHHHhCCCCCHHHHHHHHHHHHHHHHhcC--
Q 007575 482 DVLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTTGFTGADLANLVNEAALLAGRLN-- 559 (597)
Q Consensus 482 d~LD~aLlRpgRFd~~I~v~~Pd~~eR~eILk~~l~~~~~~l~~dvdl~~LA~~t~G~SgaDL~~Lv~eAal~A~r~~-- 559 (597)
+.||++++| ||+..+++++|+.++|.+||+.++...+..+ .+.+++.|+..+.||+|+||.++|++|++.|.++.
T Consensus 198 ~~ld~al~r--Rf~~~i~i~~P~~~~r~~il~~~l~~~~~~~-~~~~l~~la~~t~G~sg~dl~~l~~~A~~~a~~~~~~ 274 (355)
T 2qp9_X 198 WQLDSAIRR--RFERRIYIPLPDLAARTTMFEINVGDTPSVL-TKEDYRTLGAMTEGYSGSDIAVVVKDALMQPIRKIQS 274 (355)
T ss_dssp GGSCHHHHH--TCCEEEECCCCCHHHHHHHHHHHHTTSCBCC-CHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccCCHHHHc--ccCEEEEeCCcCHHHHHHHHHHHHhhCCCCC-CHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999 9999999999999999999999998654333 45679999999999999999999999999998751
Q ss_pred -----------------------------------------CCcccHHHHHHHHHHHhccc
Q 007575 560 -----------------------------------------KVVVEKIDFIHAVERSIAVS 579 (597)
Q Consensus 560 -----------------------------------------~~~It~~d~~~Al~~v~~g~ 579 (597)
...|+++||..|+.++.+..
T Consensus 275 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~df~~Al~~~~ps~ 335 (355)
T 2qp9_X 275 ATHFKDVSTEDDETRKLTPSSPGDDGAIEMSWTDIEADELKEPDLTIKDFLKAIKSTRPTV 335 (355)
T ss_dssp CSEEEECCC-----CCEEEECTTSSSEEECCGGGSCGGGBCCCCBCHHHHHHHHHHSCCSS
T ss_pred hhhhhhhccccccccccCcCCccccchhhcccccccccccccCCccHHHHHHHHHHcCCCC
Confidence 12499999999999987764
No 20
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=100.00 E-value=2.3e-38 Score=319.03 Aligned_cols=257 Identities=61% Similarity=0.918 Sum_probs=222.0
Q ss_pred CCCCcccccccCChHHHHHHHHHHHHhcChhHHhhcCCCCCCceEEeCCCCChHHHHHHHHHHhcCCCeeeechhhhHHH
Q 007575 325 QGDTITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFVEL 404 (597)
Q Consensus 325 ~~~~vtf~dV~G~de~k~~L~eiv~~l~~p~~~~~lg~~~p~gVLL~GPPGTGKT~LArAIA~el~~pfi~is~sef~~~ 404 (597)
+.+.++|++++|.+++++.|.+++.++..++.|..++...++++||+||||||||++|+++|++++.||+.++++++...
T Consensus 4 ~~~~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~~~~~~~~v~~~~~~~~ 83 (268)
T 2r62_A 4 EKPNVRFKDMAGNEEAKEEVVEIVDFLKYPERYANLGAKIPKGVLLVGPPGTGKTLLAKAVAGEAHVPFFSMGGSSFIEM 83 (268)
T ss_dssp CCCCCCSTTSSSCTTTHHHHHHHHHHHHCHHHHHHHSCCCCSCCCCBCSSCSSHHHHHHHHHHHHTCCCCCCCSCTTTTS
T ss_pred cCCCCCHHHhCCcHHHHHHHHHHHHHHHChHHHHHCCCCCCceEEEECCCCCcHHHHHHHHHHHhCCCEEEechHHHHHh
Confidence 45678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhcchHHHHHHHHHHHhcCCeEEEEcCcchhhhhcCCcccccchhHHHHHHHHHHHHhcCCCCC-CcEEEEEecCCCCC
Q 007575 405 YVGMGASRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSN-SAVIVLGATNRSDV 483 (597)
Q Consensus 405 ~vG~~e~~vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~eqtLnqLL~emdg~~~~-~~VIVIaaTNrpd~ 483 (597)
+.|.+...++.+|+.+....|+||||||+|.+...+..+.....+.+..+.+++|+..|+++... ..++||++||.++.
T Consensus 84 ~~~~~~~~~~~~~~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~v~vi~ttn~~~~ 163 (268)
T 2r62_A 84 FVGLGASRVRDLFETAKKQAPSIIFIDEIDAIGKSRAAGGVVSGNDEREQTLNQLLAEMDGFGSENAPVIVLAATNRPEI 163 (268)
T ss_dssp CSSSCSSSSSTTHHHHHHSCSCEEEESCGGGTTC----------CCCSCSSTTTTTTTTTCSSCSCSCCEEEECBSCCTT
T ss_pred hcchHHHHHHHHHHHHHhcCCeEEEEeChhhhcccccccccCCCchhHHHHHHHHHHHhhCcccCCCCEEEEEecCCchh
Confidence 99988888899999999999999999999999876532211122233345678889999877643 45999999999999
Q ss_pred CChhhhCCCCcceEEEecCCCHHHHHHHHHHHHhcCCCCCCCCCCHHHHHHhCCCCCHHHHHHHHHHHHHHHHhcCCCcc
Q 007575 484 LDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTTGFTGADLANLVNEAALLAGRLNKVVV 563 (597)
Q Consensus 484 LD~aLlRpgRFd~~I~v~~Pd~~eR~eILk~~l~~~~~~l~~dvdl~~LA~~t~G~SgaDL~~Lv~eAal~A~r~~~~~I 563 (597)
+|++++|+|||+..++++.|+.++|.++|+.++.. .++..+++++.++..+.|++|+||.++|++|+..|.+++...|
T Consensus 164 ld~~l~r~~Rf~~~i~i~~p~~~~r~~il~~~~~~--~~~~~~~~~~~la~~~~g~~g~dl~~l~~~a~~~a~~~~~~~i 241 (268)
T 2r62_A 164 LDPALMRPGRFDRQVLVDKPDFNGRVEILKVHIKG--VKLANDVNLQEVAKLTAGLAGADLANIINEAALLAGRNNQKEV 241 (268)
T ss_dssp SCGGGGSSSSSCCCCBCCCCCTTTHHHHHHHHTSS--SCCCSSCCTTTTTSSSCSSCHHHHHHHHHHHHHTTSSSCCCSC
T ss_pred cCHhHcCCCCCCeEEEecCcCHHHHHHHHHHHHhc--CCCCCccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhccCCc
Confidence 99999999999999999999999999999999865 4556777889999999999999999999999999988888899
Q ss_pred cHHHHHHHHHHHhccccccc
Q 007575 564 EKIDFIHAVERSIAVSLSLS 583 (597)
Q Consensus 564 t~~d~~~Al~~v~~g~~k~s 583 (597)
+.+|+.+|++++.+...+++
T Consensus 242 ~~~~~~~a~~~~~~~~~~~~ 261 (268)
T 2r62_A 242 RQQHLKEAVERGIAGLEKKL 261 (268)
T ss_dssp CHHHHHTSCTTCCCCCC---
T ss_pred CHHHHHHHHHHHhhcchhhh
Confidence 99999999998887765543
No 21
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=100.00 E-value=1.7e-34 Score=293.81 Aligned_cols=246 Identities=59% Similarity=0.937 Sum_probs=220.5
Q ss_pred cCCCCcccccccCChHHHHHHHHHHHHhcChhHHhhcCCCCCCceEEeCCCCChHHHHHHHHHHhcCCCeeeechhhhHH
Q 007575 324 EQGDTITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFVE 403 (597)
Q Consensus 324 ~~~~~vtf~dV~G~de~k~~L~eiv~~l~~p~~~~~lg~~~p~gVLL~GPPGTGKT~LArAIA~el~~pfi~is~sef~~ 403 (597)
...+.++|+|++|.+++++++++++..+..+..+..++...++|++|+||||||||+|+++++++++.+++.+++.++..
T Consensus 32 ~~~~~~~~~~i~g~~~~~~~l~~l~~~~~~~~~l~~~~~~~~~gvll~Gp~GtGKTtl~~~i~~~~~~~~i~~~~~~~~~ 111 (278)
T 1iy2_A 32 TEAPKVTFKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEARVPFITASGSDFVE 111 (278)
T ss_dssp CCCCCCCGGGSSSCHHHHHHHHHHHHHHHCHHHHHHTTCCCCCEEEEECCTTSSHHHHHHHHHHHTTCCEEEEEHHHHHH
T ss_pred cCCCCCCHHHhCChHHHHHHHHHHHHHHHCHHHHHHcCCCCCCeEEEECCCcChHHHHHHHHHHHcCCCEEEecHHHHHH
Confidence 34478999999999999999999999998899999999999999999999999999999999999999999999999988
Q ss_pred HHhhcchHHHHHHHHHHHhcCCeEEEEcCcchhhhhcCCcccccchhHHHHHHHHHHHHhcCCCCCCcEEEEEecCCCCC
Q 007575 404 LYVGMGASRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATNRSDV 483 (597)
Q Consensus 404 ~~vG~~e~~vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~eqtLnqLL~emdg~~~~~~VIVIaaTNrpd~ 483 (597)
.+.+.....+..+|+.+....|+++||||+|.++..+... .....++..+.+++++.+|++......++++++||+|+.
T Consensus 112 ~~~~~~~~~i~~~~~~~~~~~~~i~~iDeid~l~~~~~~~-~~~~~~~~~~~~~~ll~~lsgg~~~~~~i~~a~t~~p~~ 190 (278)
T 1iy2_A 112 MFVGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSG-VGGGNDEREQTLNQLLVEMDGFEKDTAIVVMAATNRPDI 190 (278)
T ss_dssp STTTHHHHHHHHHHHHHHTSCSEEEEEETHHHHHCC---------CHHHHHHHHHHHHHHTTCCTTCCEEEEEEESCTTS
T ss_pred HHhhHHHHHHHHHHHHHHhcCCcEEehhhhHhhhcccccc-cCCcchHHHHHHHHHHHHHhCCCCCCCEEEEEecCCchh
Confidence 8888888889999999988889999999999998665421 112345677889999999999888788999999999999
Q ss_pred CChhhhCCCCcceEEEecCCCHHHHHHHHHHHHhcCCCCCCCCCCHHHHHHhCCCCCHHHHHHHHHHHHHHHHhcCCCcc
Q 007575 484 LDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTTGFTGADLANLVNEAALLAGRLNKVVV 563 (597)
Q Consensus 484 LD~aLlRpgRFd~~I~v~~Pd~~eR~eILk~~l~~~~~~l~~dvdl~~LA~~t~G~SgaDL~~Lv~eAal~A~r~~~~~I 563 (597)
||++++|++||++.++++.|+.++|.+||+.+++. .++.+++++..++..++|++++||.++|++|+..|.+++...|
T Consensus 191 ld~~l~r~~rf~~~i~i~~p~~~~r~~il~~~~~~--~~~~~~~~~~~la~~~~G~~~~dl~~l~~~a~~~a~~~~~~~I 268 (278)
T 1iy2_A 191 LDPALLRPGRFDRQIAIDAPDVKGREQILRIHARG--KPLAEDVDLALLAKRTPGFVGADLENLLNEAALLAAREGRRKI 268 (278)
T ss_dssp SCHHHHSTTSSCCEEECCCCCHHHHHHHHHHHHTT--SCBCTTCCHHHHHHTCTTCCHHHHHHHHHHHHHHHHHTTCCSB
T ss_pred CCHhHcCCCcCCeEEEeCCcCHHHHHHHHHHHHcc--CCCCcccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhCCCCc
Confidence 99999999999999999999999999999998854 4677788999999999999999999999999999998888899
Q ss_pred cHHHHHHHH
Q 007575 564 EKIDFIHAV 572 (597)
Q Consensus 564 t~~d~~~Al 572 (597)
+.+||++|+
T Consensus 269 ~~~dl~~a~ 277 (278)
T 1iy2_A 269 TMKDLEEAA 277 (278)
T ss_dssp CHHHHHHHT
T ss_pred CHHHHHHHh
Confidence 999999885
No 22
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=100.00 E-value=3.8e-35 Score=323.26 Aligned_cols=250 Identities=43% Similarity=0.671 Sum_probs=229.2
Q ss_pred CCcccccccCChHHHHHHHHHHHH-hcChhHHhhcCCCCCCceEEeCCCCChHHHHHHHHHHhcCCCeeeechhhhHHHH
Q 007575 327 DTITFADVAGVDEAKEELEEIVEF-LRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFVELY 405 (597)
Q Consensus 327 ~~vtf~dV~G~de~k~~L~eiv~~-l~~p~~~~~lg~~~p~gVLL~GPPGTGKT~LArAIA~el~~pfi~is~sef~~~~ 405 (597)
+.++|++++|.+++++.|.+.+.. +.+++.|..+|..++.++||+||||||||++|+++|++++.||+.++|+++.+.+
T Consensus 199 ~~~~~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~lAraia~~~~~~fv~vn~~~l~~~~ 278 (489)
T 3hu3_A 199 NEVGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKL 278 (489)
T ss_dssp TCCCGGGCCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCEEEEECSTTSSHHHHHHHHHHHCSSEEEEEEHHHHHTSC
T ss_pred CCCCHHHcCCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCcEEEECcCCCCHHHHHHHHHHHhCCCEEEEEchHhhhhh
Confidence 468999999999999999999988 7899999999999999999999999999999999999999999999999999999
Q ss_pred hhcchHHHHHHHHHHHhcCCeEEEEcCcchhhhhcCCcccccchhHHHHHHHHHHHHhcCCCCCCcEEEEEecCCCCCCC
Q 007575 406 VGMGASRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATNRSDVLD 485 (597)
Q Consensus 406 vG~~e~~vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~eqtLnqLL~emdg~~~~~~VIVIaaTNrpd~LD 485 (597)
.|..+..++.+|..|....||||||||||.+..+++. ...+...+++++|+..|++......++||+|||+++.||
T Consensus 279 ~g~~~~~~~~~f~~A~~~~p~iLfLDEId~l~~~~~~----~~~~~~~~~~~~LL~~ld~~~~~~~v~vIaaTn~~~~Ld 354 (489)
T 3hu3_A 279 AGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREK----THGEVERRIVSQLLTLMDGLKQRAHVIVMAATNRPNSID 354 (489)
T ss_dssp TTHHHHHHHHHHHHHHHTCSEEEEEESHHHHCBCTTS----CCCHHHHHHHHHHHHHHHHSCTTSCEEEEEEESCGGGBC
T ss_pred cchhHHHHHHHHHHHHhcCCcEEEecchhhhcccccc----ccchHHHHHHHHHHHHhhccccCCceEEEEecCCccccC
Confidence 9999999999999999999999999999999987653 234556788899999999988888999999999999999
Q ss_pred hhhhCCCCcceEEEecCCCHHHHHHHHHHHHhcCCCCCCCCCCHHHHHHhCCCCCHHHHHHHHHHHHHHHHhcCCC----
Q 007575 486 PALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTTGFTGADLANLVNEAALLAGRLNKV---- 561 (597)
Q Consensus 486 ~aLlRpgRFd~~I~v~~Pd~~eR~eILk~~l~~~~~~l~~dvdl~~LA~~t~G~SgaDL~~Lv~eAal~A~r~~~~---- 561 (597)
++++|+|||++.++++.|+.++|.+||+.++.. .++..++++..++..+.||+++||.++|++|++.|.++...
T Consensus 355 ~al~r~gRf~~~i~i~~P~~~eR~~IL~~~~~~--~~l~~~~~l~~la~~t~g~s~~dL~~L~~~A~~~a~r~~~~~i~~ 432 (489)
T 3hu3_A 355 PALRRFGRFDREVDIGIPDATGRLEILQIHTKN--MKLADDVDLEQVANETHGHVGADLAALCSEAALQAIRKKMDLIDL 432 (489)
T ss_dssp GGGGSTTSSCEEEECCCCCHHHHHHHHHHHTTT--SCBCTTCCHHHHHHTCTTCCHHHHHHHHHHHHHHHHHTTTTTCCT
T ss_pred HHHhCCCcCceEEEeCCCCHHHHHHHHHHHHhc--CCCcchhhHHHHHHHccCCcHHHHHHHHHHHHHHHHHhccccccc
Confidence 999999999999999999999999999999865 45667788999999999999999999999999999887532
Q ss_pred -------------cccHHHHHHHHHHHhcccccc
Q 007575 562 -------------VVEKIDFIHAVERSIAVSLSL 582 (597)
Q Consensus 562 -------------~It~~d~~~Al~~v~~g~~k~ 582 (597)
.|+++||+.|++++.+...+.
T Consensus 433 ~~~~~~~~~~~~~~vt~edf~~Al~~~~ps~~re 466 (489)
T 3hu3_A 433 EDETIDAEVMNSLAVTMDDFRWALSQSNPSALRE 466 (489)
T ss_dssp TCSSCCHHHHHHCCBCHHHHHHHHTSHHHHHHHG
T ss_pred cccccchhhcccCcCCHHHHHHHHHhCCchhhhc
Confidence 489999999999998776544
No 23
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=100.00 E-value=9.2e-35 Score=316.36 Aligned_cols=228 Identities=37% Similarity=0.628 Sum_probs=193.0
Q ss_pred ccCCCCcccccccCChHHHHHHHHHHHH-hcChhHHhhcCCCCCCceEEeCCCCChHHHHHHHHHHhc-CCCeeeechhh
Q 007575 323 SEQGDTITFADVAGVDEAKEELEEIVEF-LRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEA-EVPFISCSASE 400 (597)
Q Consensus 323 ~~~~~~vtf~dV~G~de~k~~L~eiv~~-l~~p~~~~~lg~~~p~gVLL~GPPGTGKT~LArAIA~el-~~pfi~is~se 400 (597)
....+.++|+||+|++++++.|.+.+.+ ++++..|.. +..+++++||+||||||||+||+++|.++ +.+|+.+++++
T Consensus 125 ~~~~~~~~~~di~G~~~~k~~l~~~v~~p~~~~~~~~~-~~~~~~~vLL~GppGtGKT~lA~aia~~~~~~~~~~v~~~~ 203 (444)
T 2zan_A 125 VIERPNVKWSDVAGLEGAKEALKEAVILPIKFPHLFTG-KRTPWRGILLFGPPGTGKSYLAKAVATEANNSTFFSISSSD 203 (444)
T ss_dssp BCCCCCCCGGGSCSCHHHHHHHHHHHTHHHHCTTTTSG-GGCCCSEEEEECSTTSSHHHHHHHHHHHCCSSEEEEECCC-
T ss_pred eccCCCCCHHHhcCHHHHHHHHHHHHHHHhhCHHHhhc-cCCCCceEEEECCCCCCHHHHHHHHHHHcCCCCEEEEeHHH
Confidence 3456789999999999999999998866 667766653 35678999999999999999999999999 89999999999
Q ss_pred hHHHHhhcchHHHHHHHHHHHhcCCeEEEEcCcchhhhhcCCcccccchhHHHHHHHHHHHHhcCCCC-CCcEEEEEecC
Q 007575 401 FVELYVGMGASRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDS-NSAVIVLGATN 479 (597)
Q Consensus 401 f~~~~vG~~e~~vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~eqtLnqLL~emdg~~~-~~~VIVIaaTN 479 (597)
+...++|..+..++.+|..++...||||||||||.+...++.. ..+...+++++|+..|+++.. ..+++||++||
T Consensus 204 l~~~~~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~~~~~----~~~~~~~~~~~lL~~l~~~~~~~~~v~vI~atn 279 (444)
T 2zan_A 204 LVSKWLGESEKLVKNLFQLARENKPSIIFIDEIDSLCGSRSEN----ESEAARRIKTEFLVQMQGVGVDNDGILVLGATN 279 (444)
T ss_dssp --------CCCTHHHHHHHHHHSCSEEEEESCTTTTCCCSSCC----CCGGGHHHHHHHHTTTTCSSCCCSSCEEEEEES
T ss_pred HHhhhcchHHHHHHHHHHHHHHcCCeEEEEechHhhccCCCCc----cccHHHHHHHHHHHHHhCcccCCCCEEEEecCC
Confidence 9999999999999999999999999999999999998776542 344556788999999998763 57899999999
Q ss_pred CCCCCChhhhCCCCcceEEEecCCCHHHHHHHHHHHHhcCCCCCCCCCCHHHHHHhCCCCCHHHHHHHHHHHHHHHHhc
Q 007575 480 RSDVLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTTGFTGADLANLVNEAALLAGRL 558 (597)
Q Consensus 480 rpd~LD~aLlRpgRFd~~I~v~~Pd~~eR~eILk~~l~~~~~~l~~dvdl~~LA~~t~G~SgaDL~~Lv~eAal~A~r~ 558 (597)
+++.||++++| ||+..+++++|+.++|.+|++.++...+..+ .+.+++.|+..+.||+|+||.++|++|++.|.++
T Consensus 280 ~~~~ld~al~r--Rf~~~i~i~~P~~~~r~~il~~~l~~~~~~l-~~~~l~~la~~t~G~sgadl~~l~~~a~~~a~r~ 355 (444)
T 2zan_A 280 IPWVLDSAIRR--RFEKRIYIPLPEAHARAAMFRLHLGSTQNSL-TEADFQELGRKTDGYSGADISIIVRDALMQPVRK 355 (444)
T ss_dssp CGGGSCHHHHT--TCCEEEECCCCCHHHHHHHHHHHHTTSCEEC-CHHHHHHHHHHTTTCCHHHHHHHHHHHHTHHHHH
T ss_pred CccccCHHHHh--hcceEEEeCCcCHHHHHHHHHHHHhcCCCCC-CHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHH
Confidence 99999999999 9999999999999999999999997654333 4568999999999999999999999999988764
No 24
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=100.00 E-value=2.3e-37 Score=359.39 Aligned_cols=316 Identities=36% Similarity=0.666 Sum_probs=248.5
Q ss_pred ceeEEEecCCCCCchhHHH--HHhCCceecCCCC---------------------------CCcCcHHHHHHHHHHHHHH
Q 007575 241 KRIVYTTTRPSDIKTPYEK--MLENQVEFGSPDK---------------------------RSGGFLNSALIALFYVAVL 291 (597)
Q Consensus 241 ~~~~~~t~~~~~~~~~~~~--~~~~~v~~~~~~~---------------------------~~~~~~~~~l~~l~~~~~l 291 (597)
..++.+|++|+.+++.+.. ++++.+.+..|+. .+.||.+.++..+|..+.+
T Consensus 341 v~vI~atn~~~~ld~al~r~gRf~~~i~i~~p~~~~r~~il~~~~~~~~l~~~~~l~~la~~t~g~~g~dl~~l~~ea~~ 420 (806)
T 1ypw_A 341 VIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLADDVDLEQVANETHGHVGADLAALCSEAAL 420 (806)
T ss_dssp CEEEEECSCTTTSCTTTTSTTSSCEEECCCCCCHHHHHHHHHHTTTTSCCCTTCCTHHHHHSCSSCCHHHHHHHHHHHHH
T ss_pred EEEecccCCchhcCHHHhcccccccccccCCCCHHHHHHHHHHHHhcCCCcccchhHHHHHhhcCcchHHHHHHHHHHHH
Confidence 3567889999888876653 5555555544432 1568889999999988888
Q ss_pred HHHHhhcccc-cccc------ccc--ccc-------cccCCCCCCccccCCCCcccccccCChHHHHHHHHHHHH-hcCh
Q 007575 292 AGLLHRFPVS-FSQT------AGQ--VGH-------RKTRGPGGAKVSEQGDTITFADVAGVDEAKEELEEIVEF-LRSP 354 (597)
Q Consensus 292 ~~~~~~~~~~-~~~~------~~~--~~~-------~~~~~~~~~~~~~~~~~vtf~dV~G~de~k~~L~eiv~~-l~~p 354 (597)
.++.+..... .... ... ... .....+.......+.+.++|+|++|++++|+.|.+++.+ ++++
T Consensus 421 ~a~r~~~~~i~~~~~~~~~~~~~~~~v~~~d~~~al~~~~~s~~~~~~~~~~~v~~~di~gl~~vk~~l~~~v~~~~~~~ 500 (806)
T 1ypw_A 421 QAIRKKMDLIDLEDETIDAEVMNSLAVTMDDFRWALSQSNPSALRETVVEVPQVTWEDIGGLEDVKRELQELVQYPVEHP 500 (806)
T ss_dssp HHHHHTTTTTSCHHHHCCHHHHTTCCCCTTHHHHHHHHSCCCCCCCCCCCCCCCSSCSSSCCCCHHHHHHTTTTSSSSSC
T ss_pred HHHhhhccccchhhhccchhhhhhhhhhhhhhhccccccCchhhhhhcccCccccccccccchhhhhhHHHHHHhhhhch
Confidence 7765432110 0000 000 000 000111112233456789999999999999999999887 6788
Q ss_pred hHHhhcCCCCCCceEEeCCCCChHHHHHHHHHHhcCCCeeeechhhhHHHHhhcchHHHHHHHHHHHhcCCeEEEEcCcc
Q 007575 355 DKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFVELYVGMGASRVRDLFARAKKEAPSIIFIDEID 434 (597)
Q Consensus 355 ~~~~~lg~~~p~gVLL~GPPGTGKT~LArAIA~el~~pfi~is~sef~~~~vG~~e~~vr~lF~~A~~~aP~ILfIDEID 434 (597)
..|..++..++.++||+||||||||+||+++|++++.+|+.++++++...|+|..+..++.+|+.++...||||||||||
T Consensus 501 ~~~~~~~~~~~~~vLL~GppGtGKT~Lakala~~~~~~~i~v~~~~l~~~~~g~~~~~i~~~f~~a~~~~p~vl~iDEid 580 (806)
T 1ypw_A 501 DKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMWFGESEANVREIFDKARQAAPCVLFFDELD 580 (806)
T ss_dssp TTTTCCCCCCCCCCCCBCCTTSSHHHHHHHHHHHHTCCCCCCCCSSSTTCCTTTSSHHHHHHHHHHHHHCSBCCCCSSHH
T ss_pred HHHHhcCCCCCceeEEECCCCCCHHHHHHHHHHHhCCCEEEEechHhhhhhcCccHHHHHHHHHHHHhcCCeEEEEEChh
Confidence 88888899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhcCCcccccchhHHHHHHHHHHHHhcCCCCCCcEEEEEecCCCCCCChhhhCCCCcceEEEecCCCHHHHHHHHHH
Q 007575 435 AVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATNRSDVLDPALRRPGRFDRVVMVETPDKIGREAILKV 514 (597)
Q Consensus 435 aL~~~r~~~~~~~~~~e~eqtLnqLL~emdg~~~~~~VIVIaaTNrpd~LD~aLlRpgRFd~~I~v~~Pd~~eR~eILk~ 514 (597)
.++..++... ...+....+++++||.+|+++....+++||+|||+++.||++++|||||+..+++++|+.++|.+||+.
T Consensus 581 ~l~~~r~~~~-~~~~~~~~~v~~~LL~~ld~~~~~~~v~vI~tTN~~~~ld~allrpgRf~~~i~~~~p~~~~r~~Il~~ 659 (806)
T 1ypw_A 581 SIAKARGGNI-GDGGGAADRVINQILTEMDGMSTKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKA 659 (806)
T ss_dssp HHCCTTTTCC-SHHHHHHHHHHHHHHTTCC------CCBCCCCCBSCGGGSCTTSSGGGTTSCCCCCCCCCSHHHHHTTT
T ss_pred hhhhhccCCC-CCcchhHHHHHHHHHHHHhcccccCCeEEEEecCCcccCCHHHhCccccCceeecCCCCHHHHHHHHHH
Confidence 9998775421 123456788999999999999888899999999999999999999999999999999999999999999
Q ss_pred HHhcCCCCCCCCCCHHHHHHhCCCCCHHHHHHHHHHHHHHHHhcC
Q 007575 515 HVSKKELPLAKDIDLGDIASMTTGFTGADLANLVNEAALLAGRLN 559 (597)
Q Consensus 515 ~l~~~~~~l~~dvdl~~LA~~t~G~SgaDL~~Lv~eAal~A~r~~ 559 (597)
++++ .++..+++++.|++.+.|||++||.++|++|+..|.++.
T Consensus 660 ~l~~--~~~~~~~~l~~la~~t~g~sgadi~~l~~~a~~~a~~~~ 702 (806)
T 1ypw_A 660 NLRK--SPVAKDVDLEFLAKMTNGFSGADLTEICQRACKLAIRES 702 (806)
T ss_dssp TTSC--C----CCCCSCSCGGGSSSCCHHHHHHHHHHHHHHHSCC
T ss_pred Hhcc--CCCCcccCHHHHHHhccccCHHHHHHHHHHHHHHHHHHH
Confidence 9965 356678889999999999999999999999999998874
No 25
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=100.00 E-value=5.3e-33 Score=293.87 Aligned_cols=247 Identities=34% Similarity=0.568 Sum_probs=212.5
Q ss_pred CCCcccccccCChHHHHHHHHHHHH-hcChhHHhhcCCCCCCceEEeCCCCChHHHHHHHHHHhcCCCeeeechhhhHHH
Q 007575 326 GDTITFADVAGVDEAKEELEEIVEF-LRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFVEL 404 (597)
Q Consensus 326 ~~~vtf~dV~G~de~k~~L~eiv~~-l~~p~~~~~lg~~~p~gVLL~GPPGTGKT~LArAIA~el~~pfi~is~sef~~~ 404 (597)
.+.++|++++|++++++.|.+.+.+ +..+..|...+ .+++++||+||||||||++|+++|.+++.+|+.++++++...
T Consensus 78 ~~~~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~-~~~~~vLl~GppGtGKT~la~aia~~~~~~~~~i~~~~l~~~ 156 (357)
T 3d8b_A 78 GPPVNWEDIAGVEFAKATIKEIVVWPMLRPDIFTGLR-GPPKGILLFGPPGTGKTLIGKCIASQSGATFFSISASSLTSK 156 (357)
T ss_dssp SCCCCGGGSCSCHHHHHHHHHHTHHHHHCTTTSCGGG-SCCSEEEEESSTTSSHHHHHHHHHHHTTCEEEEEEGGGGCCS
T ss_pred CCCCCHHHhCChHHHHHHHHHHHHHHhhChHhHhhcc-CCCceEEEECCCCCCHHHHHHHHHHHcCCeEEEEehHHhhcc
Confidence 4578999999999999999999987 66777665553 678899999999999999999999999999999999999999
Q ss_pred HhhcchHHHHHHHHHHHhcCCeEEEEcCcchhhhhcCCcccccchhHHHHHHHHHHHHhcCCCC--CCcEEEEEecCCCC
Q 007575 405 YVGMGASRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDS--NSAVIVLGATNRSD 482 (597)
Q Consensus 405 ~vG~~e~~vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~eqtLnqLL~emdg~~~--~~~VIVIaaTNrpd 482 (597)
+.|..+..++.+|..+....|+||||||||.+...++. +.+....+.+++|+..|++... ..+++||++||+++
T Consensus 157 ~~g~~~~~~~~~~~~a~~~~~~vl~iDEid~l~~~~~~----~~~~~~~~~~~~lL~~l~~~~~~~~~~v~vI~atn~~~ 232 (357)
T 3d8b_A 157 WVGEGEKMVRALFAVARCQQPAVIFIDEIDSLLSQRGD----GEHESSRRIKTEFLVQLDGATTSSEDRILVVGATNRPQ 232 (357)
T ss_dssp STTHHHHHHHHHHHHHHHTCSEEEEEETHHHHTBC----------CHHHHHHHHHHHHHHC----CCCCEEEEEEESCGG
T ss_pred ccchHHHHHHHHHHHHHhcCCeEEEEeCchhhhccCCC----CcchHHHHHHHHHHHHHhcccccCCCCEEEEEecCChh
Confidence 99999999999999999999999999999999876643 2345567888999999998653 46799999999999
Q ss_pred CCChhhhCCCCcceEEEecCCCHHHHHHHHHHHHhcCCCCCCCCCCHHHHHHhCCCCCHHHHHHHHHHHHHHHHhc----
Q 007575 483 VLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTTGFTGADLANLVNEAALLAGRL---- 558 (597)
Q Consensus 483 ~LD~aLlRpgRFd~~I~v~~Pd~~eR~eILk~~l~~~~~~l~~dvdl~~LA~~t~G~SgaDL~~Lv~eAal~A~r~---- 558 (597)
.++++++| ||+..++++.|+.++|.+|++.++...+..+.+ .+++.|+..+.||+++||.++|++|...+.++
T Consensus 233 ~l~~~l~~--Rf~~~i~i~~p~~~~r~~il~~~~~~~~~~l~~-~~l~~la~~t~G~s~~dl~~l~~~a~~~~ir~l~~~ 309 (357)
T 3d8b_A 233 EIDEAARR--RLVKRLYIPLPEASARKQIVINLMSKEQCCLSE-EEIEQIVQQSDAFSGADMTQLCREASLGPIRSLQTA 309 (357)
T ss_dssp GBCHHHHT--TCCEEEECCCCCHHHHHHHHHHHHHTSCBCCCH-HHHHHHHHHTTTCCHHHHHHHHHHHHTHHHHHCCC-
T ss_pred hCCHHHHh--hCceEEEeCCcCHHHHHHHHHHHHhhcCCCccH-HHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHhhhh
Confidence 99999999 999999999999999999999999876555543 46899999999999999999999999988874
Q ss_pred --------CCCcccHHHHHHHHHHHhcccc
Q 007575 559 --------NKVVVEKIDFIHAVERSIAVSL 580 (597)
Q Consensus 559 --------~~~~It~~d~~~Al~~v~~g~~ 580 (597)
....|+.+||..|+.++.+...
T Consensus 310 ~~~~~~~~~~~~i~~~d~~~al~~~~ps~~ 339 (357)
T 3d8b_A 310 DIATITPDQVRPIAYIDFENAFRTVRPSVS 339 (357)
T ss_dssp ---------CCCBCHHHHHHHHHHHGGGCC
T ss_pred hhccccccccCCcCHHHHHHHHHhcCCCCC
Confidence 2357999999999999877543
No 26
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=100.00 E-value=1.9e-33 Score=287.15 Aligned_cols=247 Identities=38% Similarity=0.600 Sum_probs=209.8
Q ss_pred cCCCCcccccccCChHHHHHHHHHHHH-hcChhHHhhcCCCCCCceEEeCCCCChHHHHHHHHHHhcCCCeeeechhhhH
Q 007575 324 EQGDTITFADVAGVDEAKEELEEIVEF-LRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFV 402 (597)
Q Consensus 324 ~~~~~vtf~dV~G~de~k~~L~eiv~~-l~~p~~~~~lg~~~p~gVLL~GPPGTGKT~LArAIA~el~~pfi~is~sef~ 402 (597)
...++++|++++|.+++++.|.+.+.. +.+++.|..++ .+++++||+||||||||++|+++|++++.+|+.++++++.
T Consensus 13 ~~~~~~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~-~~~~~vll~Gp~GtGKT~la~~la~~~~~~~~~i~~~~l~ 91 (297)
T 3b9p_A 13 EGGAKVEWTDIAGQDVAKQALQEMVILPSVRPELFTGLR-APAKGLLLFGPPGNGKTLLARAVATECSATFLNISAASLT 91 (297)
T ss_dssp CCSSCCCGGGSCCCHHHHHHHHHHTHHHHHCGGGSCGGG-CCCSEEEEESSSSSCHHHHHHHHHHHTTCEEEEEESTTTS
T ss_pred cCCCCCCHHHhCChHHHHHHHHHHHHhhhhCHHHHhcCC-CCCCeEEEECcCCCCHHHHHHHHHHHhCCCeEEeeHHHHh
Confidence 345779999999999999999998876 56777666554 4678999999999999999999999999999999999999
Q ss_pred HHHhhcchHHHHHHHHHHHhcCCeEEEEcCcchhhhhcCCcccccchhHHHHHHHHHHHHhcCCCCC---CcEEEEEecC
Q 007575 403 ELYVGMGASRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSN---SAVIVLGATN 479 (597)
Q Consensus 403 ~~~vG~~e~~vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~eqtLnqLL~emdg~~~~---~~VIVIaaTN 479 (597)
..+.|.+...++.+|..+....|+||||||+|.+...++.. ..+......++|+..++++... .+++||++||
T Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~----~~~~~~~~~~~ll~~l~~~~~~~~~~~v~vi~~tn 167 (297)
T 3b9p_A 92 SKYVGDGEKLVRALFAVARHMQPSIIFIDEVDSLLSERSSS----EHEASRRLKTEFLVEFDGLPGNPDGDRIVVLAATN 167 (297)
T ss_dssp SSSCSCHHHHHHHHHHHHHHTCSEEEEEETGGGTSBCC---------CCSHHHHHHHHHHHHHCC------CEEEEEEES
T ss_pred hcccchHHHHHHHHHHHHHHcCCcEEEeccHHHhccccccC----cchHHHHHHHHHHHHHhcccccCCCCcEEEEeecC
Confidence 99999999999999999999999999999999998776432 1223356778899999877653 5799999999
Q ss_pred CCCCCChhhhCCCCcceEEEecCCCHHHHHHHHHHHHhcCCCCCCCCCCHHHHHHhCCCCCHHHHHHHHHHHHHHHHhcC
Q 007575 480 RSDVLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTTGFTGADLANLVNEAALLAGRLN 559 (597)
Q Consensus 480 rpd~LD~aLlRpgRFd~~I~v~~Pd~~eR~eILk~~l~~~~~~l~~dvdl~~LA~~t~G~SgaDL~~Lv~eAal~A~r~~ 559 (597)
+++.+|+++++ ||+..+++++|+.++|.+|++.++.+.+..+.+ .+++.++..+.|++++||.++|++|+..|.++.
T Consensus 168 ~~~~l~~~l~~--R~~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~-~~~~~la~~~~g~~~~~l~~l~~~a~~~a~r~~ 244 (297)
T 3b9p_A 168 RPQELDEAALR--RFTKRVYVSLPDEQTRELLLNRLLQKQGSPLDT-EALRRLAKITDGYSGSDLTALAKDAALEPIREL 244 (297)
T ss_dssp CGGGBCHHHHH--HCCEEEECCCCCHHHHHHHHHHHHGGGSCCSCH-HHHHHHHHHTTTCCHHHHHHHHHHHTTHHHHTC
T ss_pred ChhhCCHHHHh--hCCeEEEeCCcCHHHHHHHHHHHHHhcCCCCCH-HHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHH
Confidence 99999999999 999999999999999999999999876555543 368999999999999999999999999998864
Q ss_pred ------------CCcccHHHHHHHHHHHhcc
Q 007575 560 ------------KVVVEKIDFIHAVERSIAV 578 (597)
Q Consensus 560 ------------~~~It~~d~~~Al~~v~~g 578 (597)
...|+.+||..|+.++.+.
T Consensus 245 ~~~~~~~~~~~~~~~i~~~d~~~a~~~~~~s 275 (297)
T 3b9p_A 245 NVEQVKCLDISAMRAITEQDFHSSLKRIRRS 275 (297)
T ss_dssp C--------CCCCCCCCHHHHHHHTTSCCCS
T ss_pred hhhhcccccccccCCcCHHHHHHHHHHcCCC
Confidence 2579999999998876543
No 27
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=100.00 E-value=3.6e-32 Score=290.13 Aligned_cols=247 Identities=39% Similarity=0.608 Sum_probs=203.5
Q ss_pred cCCCCcccccccCChHHHHHHHHHHHH-hcChhHHhhcCCCCCCceEEeCCCCChHHHHHHHHHHhcCCCeeeechhhhH
Q 007575 324 EQGDTITFADVAGVDEAKEELEEIVEF-LRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFV 402 (597)
Q Consensus 324 ~~~~~vtf~dV~G~de~k~~L~eiv~~-l~~p~~~~~lg~~~p~gVLL~GPPGTGKT~LArAIA~el~~pfi~is~sef~ 402 (597)
...+.++|++++|++++++.|.+.+.. +.++..|...+ .+++++||+||||||||++|+++|.+++.+|+.++|+++.
T Consensus 107 ~~~~~~~~~~iiG~~~~~~~l~~~~~~~~~~~~~~~~~~-~~~~~vLL~GppGtGKT~la~aia~~~~~~~~~v~~~~l~ 185 (389)
T 3vfd_A 107 DNGTAVKFDDIAGQDLAKQALQEIVILPSLRPELFTGLR-APARGLLLFGPPGNGKTMLAKAVAAESNATFFNISAASLT 185 (389)
T ss_dssp CCSCCCCGGGSCSCHHHHHHHHHHTHHHHHCTTTSCGGG-CCCSEEEEESSTTSCHHHHHHHHHHHTTCEEEEECSCCC-
T ss_pred ccCCCCChHHhCCHHHHHHHHHHHHHHhccCHHHhcccC-CCCceEEEECCCCCCHHHHHHHHHHhhcCcEEEeeHHHhh
Confidence 345678999999999999999998876 55666666555 4578999999999999999999999999999999999999
Q ss_pred HHHhhcchHHHHHHHHHHHhcCCeEEEEcCcchhhhhcCCcccccchhHHHHHHHHHHHHhcCCCC--CCcEEEEEecCC
Q 007575 403 ELYVGMGASRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDS--NSAVIVLGATNR 480 (597)
Q Consensus 403 ~~~vG~~e~~vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~eqtLnqLL~emdg~~~--~~~VIVIaaTNr 480 (597)
..+.|..+..++.+|..+....|+||||||||.+...+.. +..+...+.+++|+..|+++.. ...++||++||+
T Consensus 186 ~~~~g~~~~~~~~~~~~a~~~~~~il~iDEid~l~~~~~~----~~~~~~~~~~~~ll~~l~~~~~~~~~~v~vI~atn~ 261 (389)
T 3vfd_A 186 SKYVGEGEKLVRALFAVARELQPSIIFIDQVDSLLCERRE----GEHDASRRLKTEFLIEFDGVQSAGDDRVLVMGATNR 261 (389)
T ss_dssp ------CHHHHHHHHHHHHHSSSEEEEEETGGGGC------------CTHHHHHHHHHHHHHHHC-----CEEEEEEESC
T ss_pred ccccchHHHHHHHHHHHHHhcCCeEEEEECchhhcccCCC----ccchHHHHHHHHHHHHhhcccccCCCCEEEEEecCC
Confidence 9999999999999999999999999999999999876643 2334557788899999987654 467999999999
Q ss_pred CCCCChhhhCCCCcceEEEecCCCHHHHHHHHHHHHhcCCCCCCCCCCHHHHHHhCCCCCHHHHHHHHHHHHHHHHhc--
Q 007575 481 SDVLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTTGFTGADLANLVNEAALLAGRL-- 558 (597)
Q Consensus 481 pd~LD~aLlRpgRFd~~I~v~~Pd~~eR~eILk~~l~~~~~~l~~dvdl~~LA~~t~G~SgaDL~~Lv~eAal~A~r~-- 558 (597)
++.||++++| ||+..++++.|+.++|.+|++.++...+..+.++ ++..|+..+.|+++++|..+|+.|+..+.++
T Consensus 262 ~~~l~~~l~~--R~~~~i~i~~p~~~~r~~il~~~~~~~~~~l~~~-~~~~la~~~~g~~~~~l~~L~~~a~~~~~rel~ 338 (389)
T 3vfd_A 262 PQELDEAVLR--RFIKRVYVSLPNEETRLLLLKNLLCKQGSPLTQK-ELAQLARMTDGYSGSDLTALAKDAALGPIRELK 338 (389)
T ss_dssp GGGCCHHHHT--TCCEEEECCCCCHHHHHHHHHHHHTTSCCCSCHH-HHHHHHHHTTTCCHHHHHHHHHHHTTHHHHTSC
T ss_pred chhcCHHHHc--CcceEEEcCCcCHHHHHHHHHHHHHhcCCCCCHH-HHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhhh
Confidence 9999999999 9999999999999999999999998766666544 6899999999999999999999999999886
Q ss_pred ----------CCCcccHHHHHHHHHHHhcc
Q 007575 559 ----------NKVVVEKIDFIHAVERSIAV 578 (597)
Q Consensus 559 ----------~~~~It~~d~~~Al~~v~~g 578 (597)
....|+.+||..++.++.+.
T Consensus 339 ~~~~~~~~~~~~~~i~~~d~~~al~~~~~s 368 (389)
T 3vfd_A 339 PEQVKNMSASEMRNIRLSDFTESLKKIKRS 368 (389)
T ss_dssp CC---CCSSSCCCCCCHHHHHHHHHHCCCS
T ss_pred hhhhhccchhhcCCcCHHHHHHHHHHcCCC
Confidence 34579999999999876543
No 28
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=99.96 E-value=1.2e-28 Score=286.38 Aligned_cols=249 Identities=43% Similarity=0.674 Sum_probs=223.2
Q ss_pred CCCCcccccccCChHHHHHHHHHHHH-hcChhHHhhcCCCCCCceEEeCCCCChHHHHHHHHHHhcCCCeeeechhhhHH
Q 007575 325 QGDTITFADVAGVDEAKEELEEIVEF-LRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFVE 403 (597)
Q Consensus 325 ~~~~vtf~dV~G~de~k~~L~eiv~~-l~~p~~~~~lg~~~p~gVLL~GPPGTGKT~LArAIA~el~~pfi~is~sef~~ 403 (597)
..+.++|+||+|++++++.|.+.+.. +.+++.|..++..++.++||+||||||||+||+++|++++.+|+.+++.++.+
T Consensus 197 ~~~~v~~~di~G~~~~~~~l~e~i~~~l~~~~~~~~l~i~~~~~vLL~Gp~GtGKTtLarala~~l~~~~i~v~~~~l~~ 276 (806)
T 1ypw_A 197 SLNEVGYDDVGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMS 276 (806)
T ss_dssp CSSSCCGGGCCSCSGGGGHHHHHHHHHHHCGGGGTSSCCCCCCEEEECSCTTSSHHHHHHHHHHTTTCEEEEEEHHHHSS
T ss_pred ccCCCCHHHhCChHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHHHcCCcEEEEEchHhhh
Confidence 44679999999999999999999987 89999999999999999999999999999999999999999999999999999
Q ss_pred HHhhcchHHHHHHHHHHHhcCCeEEEEcCcchhhhhcCCcccccchhHHHHHHHHHHHHhcCCCCCCcEEEEEecCCCCC
Q 007575 404 LYVGMGASRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATNRSDV 483 (597)
Q Consensus 404 ~~vG~~e~~vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~eqtLnqLL~emdg~~~~~~VIVIaaTNrpd~ 483 (597)
.+.|..+..++.+|+.+....|+|+||||||.+...++. ...+...+.+++|+..|+++.....+++|++||+++.
T Consensus 277 ~~~g~~~~~l~~vf~~a~~~~p~il~iDEid~l~~~~~~----~~~~~~~~~~~~Ll~ll~g~~~~~~v~vI~atn~~~~ 352 (806)
T 1ypw_A 277 KLAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREK----THGEVERRIVSQLLTLMDGLKQRAHVIVMAATNRPNS 352 (806)
T ss_dssp SSTTHHHHHHHHHHHHHHHHCSEEEEEESGGGTSCTTSC----CCSHHHHHHHHHHHHHHHSSCTTSCCEEEEECSCTTT
T ss_pred hhhhhHHHHHHHHHHHHHhcCCcEEEeccHHHhhhcccc----ccchHHHHHHHHHHHHhhhhcccccEEEecccCCchh
Confidence 999999999999999999999999999999999887653 2345557788999999999988889999999999999
Q ss_pred CChhhhCCCCcceEEEecCCCHHHHHHHHHHHHhcCCCCCCCCCCHHHHHHhCCCCCHHHHHHHHHHHHHHHHhcCC---
Q 007575 484 LDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTTGFTGADLANLVNEAALLAGRLNK--- 560 (597)
Q Consensus 484 LD~aLlRpgRFd~~I~v~~Pd~~eR~eILk~~l~~~~~~l~~dvdl~~LA~~t~G~SgaDL~~Lv~eAal~A~r~~~--- 560 (597)
+|+++.+++||++.+.+..|+.++|.+|++.++.+ +.+..++++..++..+.|++++++..++.+|+..+.++..
T Consensus 353 ld~al~r~gRf~~~i~i~~p~~~~r~~il~~~~~~--~~l~~~~~l~~la~~t~g~~g~dl~~l~~ea~~~a~r~~~~~i 430 (806)
T 1ypw_A 353 IDPALRRFGRFDREVDIGIPDATGRLEILQIHTKN--MKLADDVDLEQVANETHGHVGADLAALCSEAALQAIRKKMDLI 430 (806)
T ss_dssp SCTTTTSTTSSCEEECCCCCCHHHHHHHHHHTTTT--SCCCTTCCTHHHHHSCSSCCHHHHHHHHHHHHHHHHHHTTTTT
T ss_pred cCHHHhcccccccccccCCCCHHHHHHHHHHHHhc--CCCcccchhHHHHHhhcCcchHHHHHHHHHHHHHHHhhhcccc
Confidence 99999999999999999999999999999998865 4566778899999999999999999999999998876532
Q ss_pred --------------CcccHHHHHHHHHHHhccc
Q 007575 561 --------------VVVEKIDFIHAVERSIAVS 579 (597)
Q Consensus 561 --------------~~It~~d~~~Al~~v~~g~ 579 (597)
..++.+|+..++....+..
T Consensus 431 ~~~~~~~~~~~~~~~~v~~~d~~~al~~~~~s~ 463 (806)
T 1ypw_A 431 DLEDETIDAEVMNSLAVTMDDFRWALSQSNPSA 463 (806)
T ss_dssp SCHHHHCCHHHHTTCCCCTTHHHHHHHHSCCCC
T ss_pred chhhhccchhhhhhhhhhhhhhhccccccCchh
Confidence 2356678888887765443
No 29
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=99.95 E-value=2.6e-28 Score=251.42 Aligned_cols=176 Identities=20% Similarity=0.260 Sum_probs=138.2
Q ss_pred CCCCCCceEEeCCCCChHHHHHHHHHHhcCCCeeeechhhhHHHHhhcchHHHHHHHHHH----HhcCCeEEEEcCcchh
Q 007575 361 GARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFVELYVGMGASRVRDLFARA----KKEAPSIIFIDEIDAV 436 (597)
Q Consensus 361 g~~~p~gVLL~GPPGTGKT~LArAIA~el~~pfi~is~sef~~~~vG~~e~~vr~lF~~A----~~~aP~ILfIDEIDaL 436 (597)
+.++|+++||+||||||||+||+++|++++.+|+.++++++...++|..+..++++|..| +...||||||||||.+
T Consensus 32 ~~~~p~~lLl~GppGtGKT~la~aiA~~l~~~~i~v~~~~l~~~~~g~~~~~i~~~f~~a~~~~~~~~~~vl~iDEiD~~ 111 (293)
T 3t15_A 32 NIKVPLILGIWGGKGQGKSFQCELVFRKMGINPIMMSAGELESGNAGEPAKLIRQRYREAAEIIRKGNMCCLFINDLDAG 111 (293)
T ss_dssp TCCCCSEEEEEECTTSCHHHHHHHHHHHHTCCCEEEEHHHHHCC---HHHHHHHHHHHHHHHHHTTSSCCCEEEECCC--
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHHhCCCEEEEeHHHhhhccCchhHHHHHHHHHHHHHHHhcCCCeEEEEechhhh
Confidence 678899999999999999999999999999999999999999999999999999999999 5778999999999999
Q ss_pred hhhcCCcccccchhHHHHHHHHHHHHhcCCC-----------CCCcEEEEEecCCCCCCChhhhCCCCcceEEEecCCCH
Q 007575 437 AKSRDGRFRIVSNDEREQTLNQLLTEMDGFD-----------SNSAVIVLGATNRSDVLDPALRRPGRFDRVVMVETPDK 505 (597)
Q Consensus 437 ~~~r~~~~~~~~~~e~eqtLnqLL~emdg~~-----------~~~~VIVIaaTNrpd~LD~aLlRpgRFd~~I~v~~Pd~ 505 (597)
+..+++. .........+.+.|+..||+.. ...+++||+|||+++.+|++++|+|||+..++ .|+.
T Consensus 112 ~~~~~~~--~~~~~~~~~v~~~Ll~~ld~~~~~~~~~~~~~~~~~~v~vI~ttN~~~~ld~al~R~~R~d~~i~--~P~~ 187 (293)
T 3t15_A 112 AGRMGGT--TQYTVNNQMVNATLMNIADNPTNVQLPGMYNKQENARVPIIVTGNDFSTLYAPLIRDGRMEKFYW--APTR 187 (293)
T ss_dssp --------------CHHHHHHHHHHHHHCCC-----------CCCCCCEEEECSSCCC--CHHHHHHHEEEEEE--CCCH
T ss_pred cCCCCCC--ccccchHHHHHHHHHHHhccccccccccccccccCCCcEEEEecCCcccCCHHHhCCCCCceeEe--CcCH
Confidence 8755421 1111123455678888887432 45679999999999999999999999998886 5799
Q ss_pred HHHHHHHHHHHhcCCCCCCCCCCHHHHHHhCCCCCHHHHHH
Q 007575 506 IGREAILKVHVSKKELPLAKDIDLGDIASMTTGFTGADLAN 546 (597)
Q Consensus 506 ~eR~eILk~~l~~~~~~l~~dvdl~~LA~~t~G~SgaDL~~ 546 (597)
++|.+|++.++.. .+++.+.++..+.||++++|..
T Consensus 188 ~~r~~Il~~~~~~------~~~~~~~l~~~~~~~~~~~l~~ 222 (293)
T 3t15_A 188 EDRIGVCTGIFRT------DNVPAEDVVKIVDNFPGQSIDF 222 (293)
T ss_dssp HHHHHHHHHHHGG------GCCCHHHHHHHHHHSCSCCHHH
T ss_pred HHHHHHHHHhccC------CCCCHHHHHHHhCCCCcccHHH
Confidence 9999999988864 3567899999999999988763
No 30
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=99.92 E-value=2.2e-26 Score=250.85 Aligned_cols=171 Identities=21% Similarity=0.251 Sum_probs=130.8
Q ss_pred CCCcccccccCChHHHHHHHHHHHHhcChhHHhhcCCCCCCceEEeCCCCChHHHHHHHHHHhcC--CCeeeechhhhHH
Q 007575 326 GDTITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAE--VPFISCSASEFVE 403 (597)
Q Consensus 326 ~~~vtf~dV~G~de~k~~L~eiv~~l~~p~~~~~lg~~~p~gVLL~GPPGTGKT~LArAIA~el~--~pfi~is~sef~~ 403 (597)
.+...|++++|++++++.+.++++.++. |..+++++||+||||||||++|+++|++++ ++|+.++++++..
T Consensus 31 ~~~~~~~~iiG~~~~~~~l~~~~~~~~~-------~~~~~~~iLl~GppGtGKT~la~ala~~l~~~~~~~~~~~~~~~~ 103 (456)
T 2c9o_A 31 LAKQAASGLVGQENAREACGVIVELIKS-------KKMAGRAVLLAGPPGTGKTALALAIAQELGSKVPFCPMVGSEVYS 103 (456)
T ss_dssp CBCSEETTEESCHHHHHHHHHHHHHHHT-------TCCTTCEEEEECCTTSSHHHHHHHHHHHHCTTSCEEEEEGGGGCC
T ss_pred ChhhchhhccCHHHHHHHHHHHHHHHHh-------CCCCCCeEEEECCCcCCHHHHHHHHHHHhCCCceEEEEeHHHHHH
Confidence 4567899999999999999999876543 556789999999999999999999999999 9999999999999
Q ss_pred HHhhcchHHHHHHHHHH---HhcCCeEEEEcCcchhhhhcCCcccccchhHHH---------------HHHHHHHHHhc-
Q 007575 404 LYVGMGASRVRDLFARA---KKEAPSIIFIDEIDAVAKSRDGRFRIVSNDERE---------------QTLNQLLTEMD- 464 (597)
Q Consensus 404 ~~vG~~e~~vr~lF~~A---~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~e---------------qtLnqLL~emd- 464 (597)
.++|.++. ++++|+.| +...||||||||+|+++..++.....+...... +..++++..|+
T Consensus 104 ~~~~~~~~-~~~~f~~a~~~~~~~~~il~iDEid~l~~~r~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ll~~l~~ 182 (456)
T 2c9o_A 104 TEIKKTEV-LMENFRRAIGLRIKETKEVYEGEVTELTPCETENPMGGYGKTISHVIIGLKTAKGTKQLKLDPSIFESLQK 182 (456)
T ss_dssp SSSCHHHH-HHHHHHHTEEEEEEEEEEEEEEEEEEEEEC--------------CEEEEEEETTEEEEEEECHHHHHHHHH
T ss_pred HhhhhhHH-HHHHHHHHHhhhhcCCcEEEEechhhcccccCCCCCCCcchHHHHHHHHHhccccchhHhhhHHHHHHHhh
Confidence 99999887 99999999 788899999999999998875431111111101 11233555554
Q ss_pred -CCCCCCcEEEEEecCCCCCCChhhhCCCCcce--EEEecCCC
Q 007575 465 -GFDSNSAVIVLGATNRSDVLDPALRRPGRFDR--VVMVETPD 504 (597)
Q Consensus 465 -g~~~~~~VIVIaaTNrpd~LD~aLlRpgRFd~--~I~v~~Pd 504 (597)
+......++|+++||+++.+|+++.|+||||+ .++++.|+
T Consensus 183 ~~~~~~~~v~i~attn~~~~ld~a~~r~~rfd~~~~~~v~~p~ 225 (456)
T 2c9o_A 183 ERVEAGDVIYIEANSGAVKRQGRCDTYATEFDLEAEEYVPLPK 225 (456)
T ss_dssp TTCCTTEEEEEETTTCCEEEEEEETTSCCTTSCSSSSEECCCC
T ss_pred ccCCCCCEEEEEcCCCCcccCChhhcCCcccCcceeEecCCCc
Confidence 33444456666888999999999999999987 45566663
No 31
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=99.91 E-value=7e-24 Score=222.16 Aligned_cols=225 Identities=20% Similarity=0.287 Sum_probs=174.1
Q ss_pred CCCcccccccCChHHHHHHHHHHHHhcChhHHhhcCCCCCCceEEeCCCCChHHHHHHHHHHhcC--CCeeeechhhhHH
Q 007575 326 GDTITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAE--VPFISCSASEFVE 403 (597)
Q Consensus 326 ~~~vtf~dV~G~de~k~~L~eiv~~l~~p~~~~~lg~~~p~gVLL~GPPGTGKT~LArAIA~el~--~pfi~is~sef~~ 403 (597)
.|..+|++++|.+++++.+..+...+.. +..+++++||+||||||||++|+++|.+++ .||+.+++..+..
T Consensus 38 ~p~~~~~~ivG~~~~~~~l~~l~~~~~~-------~~~~~~~vLl~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~~ 110 (368)
T 3uk6_A 38 EPRQASQGMVGQLAARRAAGVVLEMIRE-------GKIAGRAVLIAGQPGTGKTAIAMGMAQALGPDTPFTAIAGSEIFS 110 (368)
T ss_dssp CBCSEETTEESCHHHHHHHHHHHHHHHT-------TCCTTCEEEEEESTTSSHHHHHHHHHHHHCSSCCEEEEEGGGGSC
T ss_pred CcCcchhhccChHHHHHHHHHHHHHHHc-------CCCCCCEEEEECCCCCCHHHHHHHHHHHhcccCCcccccchhhhh
Confidence 3556799999999999998888876654 344568999999999999999999999987 4888888766332
Q ss_pred HH-------------------------------------------------hhcchHHHHHHHHHHHhc---------CC
Q 007575 404 LY-------------------------------------------------VGMGASRVRDLFARAKKE---------AP 425 (597)
Q Consensus 404 ~~-------------------------------------------------vG~~e~~vr~lF~~A~~~---------aP 425 (597)
.+ .|.....++..+..+... .|
T Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ld~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~ 190 (368)
T 3uk6_A 111 LEMSKTEALTQAFRRSIGVRIKAGAVHTVSLHEIDVINSRTQGFLALFSGDTGEIKSEVREQINAKVAEWREEGKAEIIP 190 (368)
T ss_dssp SSSCHHHHHHHHHHHSBEECC------CEEHHHHHHHTC----CCSCC-------CHHHHHHHHHHHHHHHHHTC---CB
T ss_pred cccchhHHHHHHHHHHHHHHhhhhccccccHhhhhhhhcccccchhhccCcccccHHHHHHHHHHHHHHhhhhccccccC
Confidence 21 122244566666555431 27
Q ss_pred eEEEEcCcchhhhhcCCcccccchhHHHHHHHHHHHHhcCCCCCCcEEEEEec-----------CCCCCCChhhhCCCCc
Q 007575 426 SIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGAT-----------NRSDVLDPALRRPGRF 494 (597)
Q Consensus 426 ~ILfIDEIDaL~~~r~~~~~~~~~~e~eqtLnqLL~emdg~~~~~~VIVIaaT-----------Nrpd~LD~aLlRpgRF 494 (597)
+||||||+|.+.. ...+.|+..++... ..++++++. |.++.++++|++ ||
T Consensus 191 ~vl~IDEi~~l~~---------------~~~~~L~~~le~~~--~~~~ii~t~~~~~~i~~t~~~~~~~l~~~l~s--R~ 251 (368)
T 3uk6_A 191 GVLFIDEVHMLDI---------------ESFSFLNRALESDM--APVLIMATNRGITRIRGTSYQSPHGIPIDLLD--RL 251 (368)
T ss_dssp CEEEEESGGGSBH---------------HHHHHHHHHTTCTT--CCEEEEEESCSEEECBTSSCEEETTCCHHHHT--TE
T ss_pred ceEEEhhccccCh---------------HHHHHHHHHhhCcC--CCeeeeecccceeeeeccCCCCcccCCHHHHh--hc
Confidence 8999999998852 34567777776433 345555554 347889999999 99
Q ss_pred ceEEEecCCCHHHHHHHHHHHHhcCCCCCCCCCCHHHHHHhCCCCCHHHHHHHHHHHHHHHHhcCCCcccHHHHHHHHHH
Q 007575 495 DRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTTGFTGADLANLVNEAALLAGRLNKVVVEKIDFIHAVER 574 (597)
Q Consensus 495 d~~I~v~~Pd~~eR~eILk~~l~~~~~~l~~dvdl~~LA~~t~G~SgaDL~~Lv~eAal~A~r~~~~~It~~d~~~Al~~ 574 (597)
.. +.+++|+.+++.+|++.++...+..+.++ .++.++..+.+.+++++.++|+.|+..|..++...|+.+|+++|++.
T Consensus 252 ~~-i~~~~~~~~e~~~il~~~~~~~~~~~~~~-~l~~l~~~~~~G~~r~~~~ll~~a~~~A~~~~~~~It~~~v~~a~~~ 329 (368)
T 3uk6_A 252 LI-VSTTPYSEKDTKQILRIRCEEEDVEMSED-AYTVLTRIGLETSLRYAIQLITAASLVCRKRKGTEVQVDDIKRVYSL 329 (368)
T ss_dssp EE-EEECCCCHHHHHHHHHHHHHHTTCCBCHH-HHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHH
T ss_pred cE-EEecCCCHHHHHHHHHHHHHHcCCCCCHH-HHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Confidence 75 89999999999999999998776666655 48889999985689999999999999999999999999999999987
Q ss_pred Hhcc
Q 007575 575 SIAV 578 (597)
Q Consensus 575 v~~g 578 (597)
++..
T Consensus 330 ~~~~ 333 (368)
T 3uk6_A 330 FLDE 333 (368)
T ss_dssp SBCH
T ss_pred hcCH
Confidence 6543
No 32
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=99.90 E-value=5.1e-24 Score=217.96 Aligned_cols=223 Identities=18% Similarity=0.283 Sum_probs=174.0
Q ss_pred cccCChHHHHHHHHHHHHhcChhHHhhcCCC---CCCceEEeCCCCChHHHHHHHHHHhc-------CCCeeeechhhhH
Q 007575 333 DVAGVDEAKEELEEIVEFLRSPDKYIRLGAR---PPRGVLLVGLPGTGKTLLAKAVAGEA-------EVPFISCSASEFV 402 (597)
Q Consensus 333 dV~G~de~k~~L~eiv~~l~~p~~~~~lg~~---~p~gVLL~GPPGTGKT~LArAIA~el-------~~pfi~is~sef~ 402 (597)
+++|++++++.|.+++..+..+..+...|.. ++.++||+||||||||++|+++|+++ ..+++.++++++.
T Consensus 32 ~i~G~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~vll~G~~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~l~ 111 (309)
T 3syl_A 32 ELIGLKPVKDRIRETAALLLVERARQKLGLAHETPTLHMSFTGNPGTGKTTVALKMAGLLHRLGYVRKGHLVSVTRDDLV 111 (309)
T ss_dssp HSSSCHHHHHHHHHHHHHHHHHHHHHHHTCCSSCCCCEEEEEECTTSSHHHHHHHHHHHHHHTTSSSSCCEEEECGGGTC
T ss_pred HccChHHHHHHHHHHHHHHHhHHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHHHHHhcCCcCCCcEEEEcHHHhh
Confidence 7999999999999999986666666666644 44579999999999999999999987 3499999999999
Q ss_pred HHHhhcchHHHHHHHHHHHhcCCeEEEEcCcchhhhhcCCcccccchhHHHHHHHHHHHHhcCCCCCCcEEEEEecCCCC
Q 007575 403 ELYVGMGASRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATNRSD 482 (597)
Q Consensus 403 ~~~vG~~e~~vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~eqtLnqLL~emdg~~~~~~VIVIaaTNrpd 482 (597)
..+.|.....+..+|..+ .++||||||+|.+...++. ++.....++.|+..|+.. ..+++||++||.++
T Consensus 112 ~~~~g~~~~~~~~~~~~~---~~~vl~iDEid~l~~~~~~------~~~~~~~~~~Ll~~l~~~--~~~~~~i~~~~~~~ 180 (309)
T 3syl_A 112 GQYIGHTAPKTKEVLKRA---MGGVLFIDEAYYLYRPDNE------RDYGQEAIEILLQVMENN--RDDLVVILAGYADR 180 (309)
T ss_dssp CSSTTCHHHHHHHHHHHH---TTSEEEEETGGGSCCCC---------CCTHHHHHHHHHHHHHC--TTTCEEEEEECHHH
T ss_pred hhcccccHHHHHHHHHhc---CCCEEEEEChhhhccCCCc------ccccHHHHHHHHHHHhcC--CCCEEEEEeCChHH
Confidence 999999999999999887 4569999999999865432 122356778888888853 35678888888653
Q ss_pred -----CCChhhhCCCCcceEEEecCCCHHHHHHHHHHHHhcCCCCCCCCCCHHHHHHh-------CCCCCHHHHHHHHHH
Q 007575 483 -----VLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASM-------TTGFTGADLANLVNE 550 (597)
Q Consensus 483 -----~LD~aLlRpgRFd~~I~v~~Pd~~eR~eILk~~l~~~~~~l~~dvdl~~LA~~-------t~G~SgaDL~~Lv~e 550 (597)
.++|+|++ ||+.++.|++|+.+++.+|++.++.+.+..+.++ .++.++.. ....+++++.++++.
T Consensus 181 ~~~~~~~~~~l~~--R~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~-~~~~l~~~~~~~~~~~~~gn~r~l~~~l~~ 257 (309)
T 3syl_A 181 MENFFQSNPGFRS--RIAHHIEFPDYSDEELFEIAGHMLDDQNYQMTPE-AETALRAYIGLRRNQPHFANARSIRNALDR 257 (309)
T ss_dssp HHHHHHHSTTHHH--HEEEEEEECCCCHHHHHHHHHHHHHHTTCEECHH-HHHHHHHHHHHHTTSSSCCHHHHHHHHHHH
T ss_pred HHHHHhhCHHHHH--hCCeEEEcCCcCHHHHHHHHHHHHHHcCCCCCHH-HHHHHHHHHHHhccCCCCCcHHHHHHHHHH
Confidence 35799999 9999999999999999999999998776665554 35666665 333468999999999
Q ss_pred HHHHHHhc----CCCcccHHHHH
Q 007575 551 AALLAGRL----NKVVVEKIDFI 569 (597)
Q Consensus 551 Aal~A~r~----~~~~It~~d~~ 569 (597)
|+..+..+ ....++.+++.
T Consensus 258 a~~~~~~r~~~~~~~~~~~~~l~ 280 (309)
T 3syl_A 258 ARLRQANRLFTASSGPLDARALS 280 (309)
T ss_dssp HHHHHHHHHHHC---CEEHHHHH
T ss_pred HHHHHHHHHHhccCCCCCHHHHh
Confidence 98765544 34556666654
No 33
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=99.88 E-value=1.5e-21 Score=202.62 Aligned_cols=216 Identities=19% Similarity=0.218 Sum_probs=170.7
Q ss_pred CCCcccccccCChHHHHHHHHHHHHhcChhHHhhcCCCCCCceEEeCCCCChHHHHHHHHHHhcCCCeeeechhhhHHHH
Q 007575 326 GDTITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFVELY 405 (597)
Q Consensus 326 ~~~vtf~dV~G~de~k~~L~eiv~~l~~p~~~~~lg~~~p~gVLL~GPPGTGKT~LArAIA~el~~pfi~is~sef~~~~ 405 (597)
..+.+|++++|.+++++.+...+..... ....+.++||+||||||||++|+++|.+++.+|+.++|+.+.
T Consensus 23 ~~p~~~~~iiG~~~~~~~l~~~l~~~~~-------~~~~~~~vll~G~~GtGKT~la~~ia~~~~~~~~~~~~~~~~--- 92 (338)
T 3pfi_A 23 LRPSNFDGYIGQESIKKNLNVFIAAAKK-------RNECLDHILFSGPAGLGKTTLANIISYEMSANIKTTAAPMIE--- 92 (338)
T ss_dssp CCCCSGGGCCSCHHHHHHHHHHHHHHHH-------TTSCCCCEEEECSTTSSHHHHHHHHHHHTTCCEEEEEGGGCC---
T ss_pred cCCCCHHHhCChHHHHHHHHHHHHHHHh-------cCCCCCeEEEECcCCCCHHHHHHHHHHHhCCCeEEecchhcc---
Confidence 3456899999999999999998876532 134567899999999999999999999999999999987652
Q ss_pred hhcchHHHHHHHHHHHhcCCeEEEEcCcchhhhhcCCcccccchhHHHHHHHHHHHHhcCCCC----------------C
Q 007575 406 VGMGASRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDS----------------N 469 (597)
Q Consensus 406 vG~~e~~vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~eqtLnqLL~emdg~~~----------------~ 469 (597)
....+..++.. ...+++|||||||.+... ..+.|+..|+.... .
T Consensus 93 ---~~~~~~~~~~~--~~~~~vl~lDEi~~l~~~---------------~~~~Ll~~l~~~~~~~~~~~~~~~~~~~~~~ 152 (338)
T 3pfi_A 93 ---KSGDLAAILTN--LSEGDILFIDEIHRLSPA---------------IEEVLYPAMEDYRLDIIIGSGPAAQTIKIDL 152 (338)
T ss_dssp ---SHHHHHHHHHT--CCTTCEEEEETGGGCCHH---------------HHHHHHHHHHTSCC---------CCCCCCCC
T ss_pred ---chhHHHHHHHh--ccCCCEEEEechhhcCHH---------------HHHHHHHHHHhccchhhcccCccccceecCC
Confidence 22334444432 245789999999998532 33556666654321 1
Q ss_pred CcEEEEEecCCCCCCChhhhCCCCcceEEEecCCCHHHHHHHHHHHHhcCCCCCCCCCCHHHHHHhCCCCCHHHHHHHHH
Q 007575 470 SAVIVLGATNRSDVLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTTGFTGADLANLVN 549 (597)
Q Consensus 470 ~~VIVIaaTNrpd~LD~aLlRpgRFd~~I~v~~Pd~~eR~eILk~~l~~~~~~l~~dvdl~~LA~~t~G~SgaDL~~Lv~ 549 (597)
.++++|++||+...++++|++ ||+..+.+++|+.+++.++++.++...+..+.++ .++.++..+.| +++++.++++
T Consensus 153 ~~~~~i~atn~~~~l~~~L~~--R~~~~i~l~~~~~~e~~~il~~~~~~~~~~~~~~-~~~~l~~~~~G-~~r~l~~~l~ 228 (338)
T 3pfi_A 153 PKFTLIGATTRAGMLSNPLRD--RFGMQFRLEFYKDSELALILQKAALKLNKTCEEK-AALEIAKRSRS-TPRIALRLLK 228 (338)
T ss_dssp CCCEEEEEESCGGGSCHHHHT--TCSEEEECCCCCHHHHHHHHHHHHHHTTCEECHH-HHHHHHHTTTT-CHHHHHHHHH
T ss_pred CCeEEEEeCCCccccCHHHHh--hcCEEeeCCCcCHHHHHHHHHHHHHhcCCCCCHH-HHHHHHHHHCc-CHHHHHHHHH
Confidence 248999999999999999999 9999999999999999999999988765555443 47788886655 6899999999
Q ss_pred HHHHHHHhcCCCcccHHHHHHHHHHH
Q 007575 550 EAALLAGRLNKVVVEKIDFIHAVERS 575 (597)
Q Consensus 550 eAal~A~r~~~~~It~~d~~~Al~~v 575 (597)
.+...|...+...|+.+++..++...
T Consensus 229 ~~~~~a~~~~~~~i~~~~~~~~~~~~ 254 (338)
T 3pfi_A 229 RVRDFADVNDEEIITEKRANEALNSL 254 (338)
T ss_dssp HHHHHHHHTTCSEECHHHHHHHHHHH
T ss_pred HHHHHHHhhcCCccCHHHHHHHHHHh
Confidence 99888888888889999999988764
No 34
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=99.86 E-value=4.6e-21 Score=197.00 Aligned_cols=216 Identities=22% Similarity=0.278 Sum_probs=166.4
Q ss_pred CCcccccccCChHHHHHHHHHHHHhcChhHHhhcCCCCCCceEEeCCCCChHHHHHHHHHHhcCCCeeeechhhhHHHHh
Q 007575 327 DTITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFVELYV 406 (597)
Q Consensus 327 ~~vtf~dV~G~de~k~~L~eiv~~l~~p~~~~~lg~~~p~gVLL~GPPGTGKT~LArAIA~el~~pfi~is~sef~~~~v 406 (597)
.+.+|++++|.+++++.|.+.+...... ...+.++||+||||||||++|++++.+++.+|+.++|+.+..
T Consensus 7 ~p~~~~~~ig~~~~~~~l~~~l~~~~~~-------~~~~~~vll~G~~GtGKT~la~~i~~~~~~~~~~~~~~~~~~--- 76 (324)
T 1hqc_A 7 RPKTLDEYIGQERLKQKLRVYLEAAKAR-------KEPLEHLLLFGPPGLGKTTLAHVIAHELGVNLRVTSGPAIEK--- 76 (324)
T ss_dssp CCCSTTTCCSCHHHHHHHHHHHHHHHHH-------CSCCCCCEEECCTTCCCHHHHHHHHHHHTCCEEEECTTTCCS---
T ss_pred CcccHHHhhCHHHHHHHHHHHHHHHHcc-------CCCCCcEEEECCCCCCHHHHHHHHHHHhCCCEEEEeccccCC---
Confidence 3458999999999999999888754321 234678999999999999999999999999999999876521
Q ss_pred hcchHHHHHHHHHHHhcCCeEEEEcCcchhhhhcCCcccccchhHHHHHHHHHHHHhcCCC----------------CCC
Q 007575 407 GMGASRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFD----------------SNS 470 (597)
Q Consensus 407 G~~e~~vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~eqtLnqLL~emdg~~----------------~~~ 470 (597)
...+...|..+ ...+++|||||+|.+... ..+.|+..++... ...
T Consensus 77 ---~~~l~~~l~~~-~~~~~~l~lDEi~~l~~~---------------~~~~L~~~l~~~~~~~v~~~~~~~~~~~~~~~ 137 (324)
T 1hqc_A 77 ---PGDLAAILANS-LEEGDILFIDEIHRLSRQ---------------AEEHLYPAMEDFVMDIVIGQGPAARTIRLELP 137 (324)
T ss_dssp ---HHHHHHHHTTT-CCTTCEEEETTTTSCCHH---------------HHHHHHHHHHHSEEEECCSSSSSCCCEEEECC
T ss_pred ---hHHHHHHHHHh-ccCCCEEEEECCcccccc---------------hHHHHHHHHHhhhhHHhccccccccccccCCC
Confidence 12222223221 145789999999988532 1234444444321 113
Q ss_pred cEEEEEecCCCCCCChhhhCCCCcceEEEecCCCHHHHHHHHHHHHhcCCCCCCCCCCHHHHHHhCCCCCHHHHHHHHHH
Q 007575 471 AVIVLGATNRSDVLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTTGFTGADLANLVNE 550 (597)
Q Consensus 471 ~VIVIaaTNrpd~LD~aLlRpgRFd~~I~v~~Pd~~eR~eILk~~l~~~~~~l~~dvdl~~LA~~t~G~SgaDL~~Lv~e 550 (597)
++++|++||++..++++|.+ ||+.++.+++|+.+++.++++.++...+..+.++ .++.|+..+.| +++++.++++.
T Consensus 138 ~~~~i~~t~~~~~~~~~l~~--R~~~~i~l~~~~~~e~~~~l~~~~~~~~~~~~~~-~~~~l~~~~~G-~~r~l~~~l~~ 213 (324)
T 1hqc_A 138 RFTLIGATTRPGLITAPLLS--RFGIVEHLEYYTPEELAQGVMRDARLLGVRITEE-AALEIGRRSRG-TMRVAKRLFRR 213 (324)
T ss_dssp CCEEEEEESCCSSCSCSTTT--TCSCEEECCCCCHHHHHHHHHHHHHTTTCCCCHH-HHHHHHHHSCS-CHHHHHHHHHH
T ss_pred CEEEEEeCCCcccCCHHHHh--cccEEEecCCCCHHHHHHHHHHHHHhcCCCCCHH-HHHHHHHHccC-CHHHHHHHHHH
Confidence 57899999999999999988 9988999999999999999999998766666554 47888888866 67899999999
Q ss_pred HHHHHHhcCCCcccHHHHHHHHHHH
Q 007575 551 AALLAGRLNKVVVEKIDFIHAVERS 575 (597)
Q Consensus 551 Aal~A~r~~~~~It~~d~~~Al~~v 575 (597)
+...|...+...|+.+++..++...
T Consensus 214 ~~~~a~~~~~~~i~~~~~~~~~~~~ 238 (324)
T 1hqc_A 214 VRDFAQVAGEEVITRERALEALAAL 238 (324)
T ss_dssp HTTTSTTTSCSCCCHHHHHHHHHHH
T ss_pred HHHHHHHhcCCCCCHHHHHHHHHHh
Confidence 9888877777789999998888765
No 35
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=99.86 E-value=1.3e-21 Score=199.08 Aligned_cols=239 Identities=24% Similarity=0.327 Sum_probs=166.8
Q ss_pred ccccCChHHHHHHHHHHHH-hcChhHHhh-cCCCCCCceEEeCCCCChHHHHHHHHHHhcCCCeeeechhhhHH-HHhhc
Q 007575 332 ADVAGVDEAKEELEEIVEF-LRSPDKYIR-LGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFVE-LYVGM 408 (597)
Q Consensus 332 ~dV~G~de~k~~L~eiv~~-l~~p~~~~~-lg~~~p~gVLL~GPPGTGKT~LArAIA~el~~pfi~is~sef~~-~~vG~ 408 (597)
++|+|++++++.|...+.. +........ .+...+.++||+||||||||++|+++|.+++.+++.++|+++.+ .++|.
T Consensus 15 ~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~l~~~~~~i~~~~~~~~~~~~~ 94 (310)
T 1ofh_A 15 QHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGK 94 (310)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHTTSSCHHHHHHCCCCCEEEECCTTSSHHHHHHHHHHHHTCCEEEEEGGGGSSCCSGGG
T ss_pred hhcCChHHHHHHHHHHHHHHHhhhhhcccccccCCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEEcchhcccCCccCc
Confidence 3599999999999988764 111111000 01245779999999999999999999999999999999998865 45543
Q ss_pred c-hHHHHHHHHHH-----HhcCCeEEEEcCcchhhhhcCCcccccchhHHHHHHHHHHHHhcCCC--------CCCcEEE
Q 007575 409 G-ASRVRDLFARA-----KKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFD--------SNSAVIV 474 (597)
Q Consensus 409 ~-e~~vr~lF~~A-----~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~eqtLnqLL~emdg~~--------~~~~VIV 474 (597)
. ...+++++..+ ....++||||||+|.+....... +.+...+.+.+.|+..|++.. ....+++
T Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEi~~l~~~~~~~---~~~~~~~~~~~~Ll~~le~~~~~~~~~~~~~~~~~~ 171 (310)
T 1ofh_A 95 EVDSIIRDLTDSAGGAIDAVEQNGIVFIDEIDKICKKGEYS---GADVSREGVQRDLLPLVEGSTVSTKHGMVKTDHILF 171 (310)
T ss_dssp STTHHHHHHHHTTTTCHHHHHHHCEEEEECGGGGSCCSSCC---SSHHHHHHHHHHHHHHHHCCEEEETTEEEECTTCEE
T ss_pred cHHHHHHHHHHHhhHHHhhccCCCEEEEEChhhcCcccccc---ccchhHHHHHHHHHHHhcCCeEecccccccCCcEEE
Confidence 2 34566666532 11236799999999998765321 233344456788888888642 2346788
Q ss_pred EEe----cCCCCCCChhhhCCCCcceEEEecCCCHHHHHHHHHHH-----------HhcCCC--CCCCCCCHHHHHHhCC
Q 007575 475 LGA----TNRSDVLDPALRRPGRFDRVVMVETPDKIGREAILKVH-----------VSKKEL--PLAKDIDLGDIASMTT 537 (597)
Q Consensus 475 Iaa----TNrpd~LD~aLlRpgRFd~~I~v~~Pd~~eR~eILk~~-----------l~~~~~--~l~~dvdl~~LA~~t~ 537 (597)
|++ ++.+..++++|++ ||+..+.+++|+.+++.+|++.+ +...+. .+.++ .++.|+..+.
T Consensus 172 i~~~~~~~~~~~~l~~~l~~--R~~~~i~~~~~~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~-a~~~l~~~~~ 248 (310)
T 1ofh_A 172 IASGAFQVARPSDLIPELQG--RLPIRVELTALSAADFERILTEPHASLTEQYKALMATEGVNIAFTTD-AVKKIAEAAF 248 (310)
T ss_dssp EEEECCSSSCGGGSCHHHHH--TCCEEEECCCCCHHHHHHHHHSSTTCHHHHHHHHHHHTTCEEEECHH-HHHHHHHHHH
T ss_pred EEcCCcccCCcccCCHHHHh--hCCceEEcCCcCHHHHHHHHHhhHHHHHHHHHHHHHhcCCeeccCHH-HHHHHHHHhh
Confidence 888 4577889999998 99988999999999999999831 111221 23333 3677777662
Q ss_pred -------CCCHHHHHHHHHHHHHHHH-----hcCC-CcccHHHHHHHHHHHh
Q 007575 538 -------GFTGADLANLVNEAALLAG-----RLNK-VVVEKIDFIHAVERSI 576 (597)
Q Consensus 538 -------G~SgaDL~~Lv~eAal~A~-----r~~~-~~It~~d~~~Al~~v~ 576 (597)
+.+.+++.++++.+...+. ..+. ..|+.+|+++++....
T Consensus 249 ~~~~~~~~g~~R~l~~~l~~~~~~~~~~~~~~~~~~~~i~~~~v~~~l~~~~ 300 (310)
T 1ofh_A 249 RVNEKTENIGARRLHTVMERLMDKISFSASDMNGQTVNIDAAYVADALGEVV 300 (310)
T ss_dssp HHHHHSCCCTTHHHHHHHHHHSHHHHHHGGGCTTCEEEECHHHHHHHTCSSS
T ss_pred hhcccccccCcHHHHHHHHHHHHhhhcCCccccCCEEEEeeHHHHHHHHhhh
Confidence 4578999999998764322 1122 2499999998887643
No 36
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=99.83 E-value=1.8e-20 Score=189.39 Aligned_cols=228 Identities=19% Similarity=0.238 Sum_probs=154.0
Q ss_pred cccccccCChHHHHHHHHHHHHhcChhHHhhcCCCCCCceEEeCCCCChHHHHHHHHHHhcCCCeeeechhhhH-HHHhh
Q 007575 329 ITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFV-ELYVG 407 (597)
Q Consensus 329 vtf~dV~G~de~k~~L~eiv~~l~~p~~~~~lg~~~p~gVLL~GPPGTGKT~LArAIA~el~~pfi~is~sef~-~~~vG 407 (597)
.....++|.++..+.+......+. ..+...+..++.++||+||||||||++|+++|.+++.+|+.+++++.. ....+
T Consensus 30 ~~~~~~i~~~~~~~~i~~~~~~l~--~~l~~~~~~~~~~vLl~G~~GtGKT~la~~ia~~~~~~~~~i~~~~~~~g~~~~ 107 (272)
T 1d2n_A 30 YIMNGIIKWGDPVTRVLDDGELLV--QQTKNSDRTPLVSVLLEGPPHSGKTALAAKIAEESNFPFIKICSPDKMIGFSET 107 (272)
T ss_dssp TCTTCCCCCSHHHHHHHHHHHHHH--HHHHHCSSCSEEEEEEECSTTSSHHHHHHHHHHHHTCSEEEEECGGGCTTCCHH
T ss_pred HHhcCCCCccHHHHHHHHHHHHHH--HHHhccCCCCCeEEEEECCCCCcHHHHHHHHHHHhCCCEEEEeCHHHhcCCchH
Confidence 334568888887666665322221 111223456778999999999999999999999999999999887521 11112
Q ss_pred cchHHHHHHHHHHHhcCCeEEEEcCcchhhhhcCCcccccchhHHHHHHHHHHHHhcCCC-CCCcEEEEEecCCCCCCCh
Q 007575 408 MGASRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFD-SNSAVIVLGATNRSDVLDP 486 (597)
Q Consensus 408 ~~e~~vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~eqtLnqLL~emdg~~-~~~~VIVIaaTNrpd~LD~ 486 (597)
.....++.+|..+....++||||||||.+...+..+ .......++.|...+++.. ....++||++||.++.+++
T Consensus 108 ~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~-----~~~~~~~l~~L~~~~~~~~~~~~~~~ii~ttn~~~~l~~ 182 (272)
T 1d2n_A 108 AKCQAMKKIFDDAYKSQLSCVVVDDIERLLDYVPIG-----PRFSNLVLQALLVLLKKAPPQGRKLLIIGTTSRKDVLQE 182 (272)
T ss_dssp HHHHHHHHHHHHHHTSSEEEEEECCHHHHTTCBTTT-----TBCCHHHHHHHHHHTTCCCSTTCEEEEEEEESCHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCCcEEEEEChhhhhccCCCC-----hhHHHHHHHHHHHHhcCccCCCCCEEEEEecCChhhcch
Confidence 233567889999888889999999999997654321 1122456666777777654 3457889999999988887
Q ss_pred -hhhCCCCcceEEEecCCCHHHHHHHHHHHHhcCCCCCCCCCCHHHHHHhCCCC----CHHHHHHHHHHHHHHHHhcCCC
Q 007575 487 -ALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTTGF----TGADLANLVNEAALLAGRLNKV 561 (597)
Q Consensus 487 -aLlRpgRFd~~I~v~~Pd~~eR~eILk~~l~~~~~~l~~dvdl~~LA~~t~G~----SgaDL~~Lv~eAal~A~r~~~~ 561 (597)
.+.+ ||+..+.+++++. |.+|...+.... .+. +.++..++..+.|+ +.+++.++++.|...+ .
T Consensus 183 ~~l~~--rf~~~i~~p~l~~--r~~i~~i~~~~~--~~~-~~~~~~l~~~~~g~~~~g~ir~l~~~l~~a~~~~-----~ 250 (272)
T 1d2n_A 183 MEMLN--AFSTTIHVPNIAT--GEQLLEALELLG--NFK-DKERTTIAQQVKGKKVWIGIKKLLMLIEMSLQMD-----P 250 (272)
T ss_dssp TTCTT--TSSEEEECCCEEE--HHHHHHHHHHHT--CSC-HHHHHHHHHHHTTSEEEECHHHHHHHHHHHTTSC-----G
T ss_pred hhhhc--ccceEEcCCCccH--HHHHHHHHHhcC--CCC-HHHHHHHHHHhcCCCccccHHHHHHHHHHHhhhc-----h
Confidence 4555 9998888765543 444444443332 233 33588999999887 5677777777665433 3
Q ss_pred cccHHHHHHHHHHH
Q 007575 562 VVEKIDFIHAVERS 575 (597)
Q Consensus 562 ~It~~d~~~Al~~v 575 (597)
....+++..+++..
T Consensus 251 ~~~~~~~~~~l~~~ 264 (272)
T 1d2n_A 251 EYRVRKFLALLREE 264 (272)
T ss_dssp GGHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHc
Confidence 45566676666554
No 37
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=99.83 E-value=7.5e-20 Score=190.86 Aligned_cols=245 Identities=21% Similarity=0.215 Sum_probs=173.7
Q ss_pred CcccccccCChHHHHHHHHHHHHhcChhHHhhcCCCCCCceEEeCCCCChHHHHHHHHHHhc---------CCCeeeech
Q 007575 328 TITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEA---------EVPFISCSA 398 (597)
Q Consensus 328 ~vtf~dV~G~de~k~~L~eiv~~l~~p~~~~~lg~~~p~gVLL~GPPGTGKT~LArAIA~el---------~~pfi~is~ 398 (597)
...+++++|.++..+.|...+.... ....+.+++|+||||||||++|+++++++ +.+++.++|
T Consensus 15 ~~~p~~~~gr~~~~~~l~~~l~~~~--------~~~~~~~vll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~i~~ 86 (387)
T 2v1u_A 15 DYVPDVLPHREAELRRLAEVLAPAL--------RGEKPSNALLYGLTGTGKTAVARLVLRRLEARASSLGVLVKPIYVNA 86 (387)
T ss_dssp TCCCSCCTTCHHHHHHHHHTTGGGT--------SSCCCCCEEECBCTTSSHHHHHHHHHHHHHHHHHHHTCCEEEEEEET
T ss_pred ccCCCCCCCHHHHHHHHHHHHHHHH--------cCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHHhccCCCeEEEEEEC
Confidence 3455889999998888777664321 12456789999999999999999999988 889999998
Q ss_pred hhhHH------HH----------hhcchHH-HHHHHHHHHh-cCCeEEEEcCcchhhhhcCCcccccchhHHHHHHHHHH
Q 007575 399 SEFVE------LY----------VGMGASR-VRDLFARAKK-EAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLL 460 (597)
Q Consensus 399 sef~~------~~----------vG~~e~~-vr~lF~~A~~-~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~eqtLnqLL 460 (597)
....+ .. .|..... ...++..... ..|+||||||+|.+...+ .....+..++
T Consensus 87 ~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDEi~~l~~~~----------~~~~~l~~l~ 156 (387)
T 2v1u_A 87 RHRETPYRVASAIAEAVGVRVPFTGLSVGEVYERLVKRLSRLRGIYIIVLDEIDFLPKRP----------GGQDLLYRIT 156 (387)
T ss_dssp TTSCSHHHHHHHHHHHHSCCCCSSCCCHHHHHHHHHHHHTTSCSEEEEEEETTTHHHHST----------THHHHHHHHH
T ss_pred CcCCCHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHhccCCeEEEEEccHhhhcccC----------CCChHHHhHh
Confidence 64321 11 1112223 3444444433 348899999999996442 0135667777
Q ss_pred HHhcCCCCCCcEEEEEecCCC---CCCChhhhCCCCcce-EEEecCCCHHHHHHHHHHHHhc--CCCCCCCCCCHHHHHH
Q 007575 461 TEMDGFDSNSAVIVLGATNRS---DVLDPALRRPGRFDR-VVMVETPDKIGREAILKVHVSK--KELPLAKDIDLGDIAS 534 (597)
Q Consensus 461 ~emdg~~~~~~VIVIaaTNrp---d~LD~aLlRpgRFd~-~I~v~~Pd~~eR~eILk~~l~~--~~~~l~~dvdl~~LA~ 534 (597)
..++......++.+|++||.+ +.+++++.+ ||.. .+.+++|+.+++.+|++.++.. .+..+.++ .++.++.
T Consensus 157 ~~~~~~~~~~~~~~I~~t~~~~~~~~l~~~l~~--r~~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~~~-~~~~l~~ 233 (387)
T 2v1u_A 157 RINQELGDRVWVSLVGITNSLGFVENLEPRVKS--SLGEVELVFPPYTAPQLRDILETRAEEAFNPGVLDPD-VVPLCAA 233 (387)
T ss_dssp HGGGCC-----CEEEEECSCSTTSSSSCHHHHT--TTTSEECCBCCCCHHHHHHHHHHHHHHHBCTTTBCSS-HHHHHHH
T ss_pred hchhhcCCCceEEEEEEECCCchHhhhCHHHHh--cCCCeEEeeCCCCHHHHHHHHHHHHHhhccCCCCCHH-HHHHHHH
Confidence 777654424678899999887 778999998 8875 8999999999999999998864 23344444 4777888
Q ss_pred hCC---CCCHHHHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHhccccccc-cccchhhhhhc
Q 007575 535 MTT---GFTGADLANLVNEAALLAGRLNKVVVEKIDFIHAVERSIAVSLSLS-LSLSLQASISL 594 (597)
Q Consensus 535 ~t~---G~SgaDL~~Lv~eAal~A~r~~~~~It~~d~~~Al~~v~~g~~k~s-~~ls~q~~l~l 594 (597)
.+. | .++.+.++++.|...|...+...|+.+|+..|++.......... ..++.++.+++
T Consensus 234 ~~~~~~G-~~r~~~~~l~~a~~~a~~~~~~~i~~~~v~~a~~~~~~~~~~~~~~~l~~~~~~~l 296 (387)
T 2v1u_A 234 LAAREHG-DARRALDLLRVAGEIAERRREERVRREHVYSARAEIERDRVSEVVRTLPLHAKLVL 296 (387)
T ss_dssp HHHSSSC-CHHHHHHHHHHHHHHHHHTTCSCBCHHHHHHHHHHHHHHHHHHHHHSSCHHHHHHH
T ss_pred HHHHhcc-CHHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHHHHHhhchHHHHHHcCCHHHHHHH
Confidence 776 5 67889999999999998888889999999999988754322111 34555555444
No 38
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=99.83 E-value=3.4e-20 Score=195.46 Aligned_cols=235 Identities=24% Similarity=0.289 Sum_probs=161.3
Q ss_pred cccCChHHHHHHHHHHHHhcChhHHh---hcCCCCCCceEEeCCCCChHHHHHHHHHHhcCCCeeeechhhhHHH-Hhhc
Q 007575 333 DVAGVDEAKEELEEIVEFLRSPDKYI---RLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFVEL-YVGM 408 (597)
Q Consensus 333 dV~G~de~k~~L~eiv~~l~~p~~~~---~lg~~~p~gVLL~GPPGTGKT~LArAIA~el~~pfi~is~sef~~~-~vG~ 408 (597)
.|+|++++++.+...+.......... .....++.++||+||||||||++|+++|.+++.||+.++|+++... |+|.
T Consensus 16 ~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~vll~GppGtGKT~la~~ia~~~~~~~~~~~~~~l~~~~~~g~ 95 (363)
T 3hws_A 16 YVIGQEQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLIGPTGSGKTLLAETLARLLDVPFTMADATTLTEAGYVGE 95 (363)
T ss_dssp HCCSCHHHHHHHHHHHHHHHHHHHTTSCSSSCCCCCCCEEEECCTTSSHHHHHHHHHHHTTCCEEEEEHHHHTTCHHHHH
T ss_pred hccCHHHHHHHHHHHHHHHHhhhccccccccccCCCCeEEEECCCCCCHHHHHHHHHHHcCCCEEEechHHhcccccccc
Confidence 37999999999998885321111100 0112367899999999999999999999999999999999988754 7777
Q ss_pred c-hHHHHHHHHHH----HhcCCeEEEEcCcchhhhhcCCcccccchhHHHHHHHHHHHHhcCCC----------------
Q 007575 409 G-ASRVRDLFARA----KKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFD---------------- 467 (597)
Q Consensus 409 ~-e~~vr~lF~~A----~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~eqtLnqLL~emdg~~---------------- 467 (597)
. ...++.+|..+ ....++||||||||.+...+... ..+.+...+.+.+.|+..|++..
T Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~vl~lDEid~l~~~~~~~-~~~~~~~~~~~~~~Ll~~leg~~~~~~~~~~~~~~~~~~ 174 (363)
T 3hws_A 96 DVENIIQKLLQKCDYDVQKAQRGIVYIDQIDKISRKSDNP-SITRDVSGEGVQQALLKLIEGTVAAVPPQGGRKHPQQEF 174 (363)
T ss_dssp HHTHHHHHHHHHTTTCHHHHHHCEEEEECHHHHCCCSSCC----CHHHHHHHHHHHHHHHHCC----------------C
T ss_pred cHHHHHHHHHHHhhhhHHhcCCcEEEEeChhhhccccccc-ccccccchHHHHHHHHHHhcCceeeccCccccccCCCce
Confidence 5 56677787765 34457899999999998776543 12333444568899999998531
Q ss_pred ---CCCcEEEEEecCCC----------CC-----------------------------------CChhhhCCCCcceEEE
Q 007575 468 ---SNSAVIVLGATNRS----------DV-----------------------------------LDPALRRPGRFDRVVM 499 (597)
Q Consensus 468 ---~~~~VIVIaaTNrp----------d~-----------------------------------LD~aLlRpgRFd~~I~ 499 (597)
...++++|+++|.. .. +.|+|+. ||+..+.
T Consensus 175 ~~i~tsn~~~i~~g~~~~l~~~i~~~~~~~~~~gf~~~~~~~~~~~~~~~l~~~v~~~~l~~~~~~~~l~~--R~~~~~~ 252 (363)
T 3hws_A 175 LQVDTSKILFICGGAFAGLDKVISHRVETGSGIGFGATVKAKSDKASEGELLAQVEPEDLIKFGLIPEFIG--RLPVVAT 252 (363)
T ss_dssp CCCCTTSSEEEEEECCTTHHHHHHHHHCCCC------------CCSCHHHHHHTCCHHHHHHHTCCHHHHT--TCCEEEE
T ss_pred EEEECCCceEEecCCcHHHHHHHHHhhhccccCCccccccccccchhhHHHHHhCCHHHHHHcCCCHHHhc--ccCeeee
Confidence 12344555555532 11 6888887 9999999
Q ss_pred ecCCCHHHHHHHHHH----HHh-------cCCC--CCCCCCCHHHHHH--hCCCCCHHHHHHHHHHHHHHHHhcCC----
Q 007575 500 VETPDKIGREAILKV----HVS-------KKEL--PLAKDIDLGDIAS--MTTGFTGADLANLVNEAALLAGRLNK---- 560 (597)
Q Consensus 500 v~~Pd~~eR~eILk~----~l~-------~~~~--~l~~dvdl~~LA~--~t~G~SgaDL~~Lv~eAal~A~r~~~---- 560 (597)
+.+|+.+++.+|+.. ++. ..+. .+.++ .++.|+. ....+..++|+++++++...+..+..
T Consensus 253 ~~pl~~~~~~~I~~~~~~~l~~~~~~~~~~~~~~l~~~~~-a~~~L~~~~~~~~~gaR~L~~~ie~~~~~~l~~~~~~~~ 331 (363)
T 3hws_A 253 LNELSEEALIQILKEPKNALTKQYQALFNLEGVDLEFRDE-ALDAIAKKAMARKTGARGLRSIVEAALLDTMYDLPSMED 331 (363)
T ss_dssp CCCCCHHHHHHHHHSSTTCHHHHHHHHHHTTTCEEEECHH-HHHHHHHHHHHTTCTTTTHHHHHHHHHHHHHHSTTTCCC
T ss_pred cCCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCceEEECHH-HHHHHHHhhcCCccCchHHHHHHHHHHHHHHHhcccccC
Confidence 999999999999886 221 1121 12222 2566765 33556678999999998887765431
Q ss_pred ---CcccHHHHHHH
Q 007575 561 ---VVVEKIDFIHA 571 (597)
Q Consensus 561 ---~~It~~d~~~A 571 (597)
..|+.+++++.
T Consensus 332 ~~~~~I~~~~v~~~ 345 (363)
T 3hws_A 332 VEKVVIDESVIDGQ 345 (363)
T ss_dssp SEEEECHHHHTTCC
T ss_pred CceeEEcHHHHhCc
Confidence 14666666544
No 39
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=99.82 E-value=5.6e-19 Score=168.64 Aligned_cols=203 Identities=24% Similarity=0.252 Sum_probs=150.5
Q ss_pred CCCcccccccCChHHHHHHHHHHHHhcChhHHhhcCCCCCCceEEeCCCCChHHHHHHHHHHhc-----CCCeeeechhh
Q 007575 326 GDTITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEA-----EVPFISCSASE 400 (597)
Q Consensus 326 ~~~vtf~dV~G~de~k~~L~eiv~~l~~p~~~~~lg~~~p~gVLL~GPPGTGKT~LArAIA~el-----~~pfi~is~se 400 (597)
.++.+|++++|.+++++.|.+.+.. ..+.++||+||||||||++|++++.++ ..+++.+++++
T Consensus 11 ~~p~~~~~~~g~~~~~~~l~~~l~~------------~~~~~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~~~~ 78 (226)
T 2chg_A 11 YRPRTLDEVVGQDEVIQRLKGYVER------------KNIPHLLFSGPPGTGKTATAIALARDLFGENWRDNFIEMNASD 78 (226)
T ss_dssp TSCSSGGGCCSCHHHHHHHHHHHHT------------TCCCCEEEECSTTSSHHHHHHHHHHHHHGGGGGGGEEEEETTC
T ss_pred cCCCCHHHHcCcHHHHHHHHHHHhC------------CCCCeEEEECCCCCCHHHHHHHHHHHHhccccccceEEecccc
Confidence 3456799999999998888877752 123359999999999999999999875 46677777764
Q ss_pred hHHHHhhcchHHHHHHHHHHH------hcCCeEEEEcCcchhhhhcCCcccccchhHHHHHHHHHHHHhcCCCCCCcEEE
Q 007575 401 FVELYVGMGASRVRDLFARAK------KEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIV 474 (597)
Q Consensus 401 f~~~~vG~~e~~vr~lF~~A~------~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~eqtLnqLL~emdg~~~~~~VIV 474 (597)
... ...+...+.... ...++||+|||+|.+... ..+.|+..++.. ..++.+
T Consensus 79 ~~~------~~~~~~~~~~~~~~~~~~~~~~~vliiDe~~~l~~~---------------~~~~l~~~l~~~--~~~~~~ 135 (226)
T 2chg_A 79 ERG------IDVVRHKIKEFARTAPIGGAPFKIIFLDEADALTAD---------------AQAALRRTMEMY--SKSCRF 135 (226)
T ss_dssp TTC------HHHHHHHHHHHHTSCCSTTCSCEEEEEETGGGSCHH---------------HHHHHHHHHHHT--TTTEEE
T ss_pred ccC------hHHHHHHHHHHhcccCCCccCceEEEEeChhhcCHH---------------HHHHHHHHHHhc--CCCCeE
Confidence 321 122333333322 246889999999998532 234455555532 345788
Q ss_pred EEecCCCCCCChhhhCCCCcceEEEecCCCHHHHHHHHHHHHhcCCCCCCCCCCHHHHHHhCCCCCHHHHHHHHHHHHHH
Q 007575 475 LGATNRSDVLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTTGFTGADLANLVNEAALL 554 (597)
Q Consensus 475 IaaTNrpd~LD~aLlRpgRFd~~I~v~~Pd~~eR~eILk~~l~~~~~~l~~dvdl~~LA~~t~G~SgaDL~~Lv~eAal~ 554 (597)
|++||.++.+++++.+ ||. .+.+++|+.++..++++.++...+..+.++ .++.++..+.| +++.+.++++.++..
T Consensus 136 i~~~~~~~~~~~~l~~--r~~-~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~-~~~~l~~~~~g-~~r~l~~~l~~~~~~ 210 (226)
T 2chg_A 136 ILSCNYVSRIIEPIQS--RCA-VFRFKPVPKEAMKKRLLEICEKEGVKITED-GLEALIYISGG-DFRKAINALQGAAAI 210 (226)
T ss_dssp EEEESCGGGSCHHHHT--TSE-EEECCCCCHHHHHHHHHHHHHHHTCCBCHH-HHHHHHHHHTT-CHHHHHHHHHHHHHT
T ss_pred EEEeCChhhcCHHHHH--hCc-eeecCCCCHHHHHHHHHHHHHHcCCCCCHH-HHHHHHHHcCC-CHHHHHHHHHHHHhc
Confidence 8899999999999999 887 899999999999999999887666665544 47788887765 677888888877765
Q ss_pred HHhcCCCcccHHHHHHHHH
Q 007575 555 AGRLNKVVVEKIDFIHAVE 573 (597)
Q Consensus 555 A~r~~~~~It~~d~~~Al~ 573 (597)
+ ..|+.+|+++++.
T Consensus 211 ~-----~~I~~~~v~~~~~ 224 (226)
T 2chg_A 211 G-----EVVDADTIYQITA 224 (226)
T ss_dssp C-----SCBCHHHHHHHHH
T ss_pred C-----ceecHHHHHHHhc
Confidence 4 5899999998875
No 40
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=99.82 E-value=1e-19 Score=197.71 Aligned_cols=224 Identities=17% Similarity=0.262 Sum_probs=160.5
Q ss_pred CCCccccccc-CChHHHHHHHHHHHHhcChhHHhhcCCCCCCceEEeCCCCChHHHHHHHHHHhc-----CCCeeeechh
Q 007575 326 GDTITFADVA-GVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEA-----EVPFISCSAS 399 (597)
Q Consensus 326 ~~~vtf~dV~-G~de~k~~L~eiv~~l~~p~~~~~lg~~~p~gVLL~GPPGTGKT~LArAIA~el-----~~pfi~is~s 399 (597)
.+..+|++++ |..... .+..+......+ + . +.+++|+||||||||+||+++++++ +.+++++++.
T Consensus 99 ~~~~tfd~fv~g~~n~~-a~~~~~~~a~~~------~-~-~~~lll~Gp~G~GKTtLa~aia~~l~~~~~~~~v~~v~~~ 169 (440)
T 2z4s_A 99 NPDYTFENFVVGPGNSF-AYHAALEVAKHP------G-R-YNPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYITSE 169 (440)
T ss_dssp CTTCSGGGCCCCTTTHH-HHHHHHHHHHST------T-S-SCCEEEECSSSSSHHHHHHHHHHHHHHHCCSSCEEEEEHH
T ss_pred CCCCChhhcCCCCchHH-HHHHHHHHHhCC------C-C-CCeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeHH
Confidence 4567899988 544322 233333333332 1 2 5689999999999999999999988 8999999999
Q ss_pred hhHHHHhhcchHHHHHHHHHHHhcCCeEEEEcCcchhhhhcCCcccccchhHHHHHHHHHHHHhcCCCCCCcEEEEEecC
Q 007575 400 EFVELYVGMGASRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATN 479 (597)
Q Consensus 400 ef~~~~vG~~e~~vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~eqtLnqLL~emdg~~~~~~VIVIaaTN 479 (597)
++...+.+.........|.......++||||||+|.+...+ ...+.|+..++.+......+||++.+
T Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~vL~IDEi~~l~~~~-------------~~q~~l~~~l~~l~~~~~~iIitt~~ 236 (440)
T 2z4s_A 170 KFLNDLVDSMKEGKLNEFREKYRKKVDILLIDDVQFLIGKT-------------GVQTELFHTFNELHDSGKQIVICSDR 236 (440)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHTTTCSEEEEECGGGGSSCH-------------HHHHHHHHHHHHHHTTTCEEEEEESS
T ss_pred HHHHHHHHHHHcccHHHHHHHhcCCCCEEEEeCcccccCCh-------------HHHHHHHHHHHHHHHCCCeEEEEECC
Confidence 88766554433322233444444368899999999986421 11123333332222234456666655
Q ss_pred CCCC---CChhhhCCCCcc--eEEEecCCCHHHHHHHHHHHHhcCCCCCCCCCCHHHHHHhCCCCCHHHHHHHHHHHHHH
Q 007575 480 RSDV---LDPALRRPGRFD--RVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTTGFTGADLANLVNEAALL 554 (597)
Q Consensus 480 rpd~---LD~aLlRpgRFd--~~I~v~~Pd~~eR~eILk~~l~~~~~~l~~dvdl~~LA~~t~G~SgaDL~~Lv~eAal~ 554 (597)
.+.. ++++|++ ||. ..+.+++|+.++|.+|++.++...++.+.+++ ++.|+..+.| +.+++.++++.+...
T Consensus 237 ~~~~l~~l~~~L~s--R~~~g~~i~l~~p~~e~r~~iL~~~~~~~~~~i~~e~-l~~la~~~~g-n~R~l~~~L~~~~~~ 312 (440)
T 2z4s_A 237 EPQKLSEFQDRLVS--RFQMGLVAKLEPPDEETRKSIARKMLEIEHGELPEEV-LNFVAENVDD-NLRRLRGAIIKLLVY 312 (440)
T ss_dssp CGGGCSSCCHHHHH--HHHSSBCCBCCCCCHHHHHHHHHHHHHHHTCCCCTTH-HHHHHHHCCS-CHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHh--hccCCeEEEeCCCCHHHHHHHHHHHHHHcCCCCCHHH-HHHHHHhcCC-CHHHHHHHHHHHHHH
Confidence 5554 8899998 885 78999999999999999999887777777664 8899998875 899999999999988
Q ss_pred HHhcCCCcccHHHHHHHHHHHh
Q 007575 555 AGRLNKVVVEKIDFIHAVERSI 576 (597)
Q Consensus 555 A~r~~~~~It~~d~~~Al~~v~ 576 (597)
|...+. .|+.+++++++....
T Consensus 313 a~~~~~-~It~~~~~~~l~~~~ 333 (440)
T 2z4s_A 313 KETTGK-EVDLKEAILLLKDFI 333 (440)
T ss_dssp HHHSSS-CCCHHHHHHHTSTTT
T ss_pred HHHhCC-CCCHHHHHHHHHHHh
Confidence 876654 699999999988766
No 41
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=99.82 E-value=9.6e-21 Score=211.05 Aligned_cols=229 Identities=22% Similarity=0.299 Sum_probs=153.8
Q ss_pred CcccccccCChHHHHHHHHHHHHhcChhHHhhcCCCCCCceEEeCCCCChHHHHHHHHHHhcCCCeeeechhhhHH----
Q 007575 328 TITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFVE---- 403 (597)
Q Consensus 328 ~vtf~dV~G~de~k~~L~eiv~~l~~p~~~~~lg~~~p~gVLL~GPPGTGKT~LArAIA~el~~pfi~is~sef~~---- 403 (597)
..-.+|++|++++++.+.+.+...... ... ++..+||+||||||||+||+++|+.++.++..+++..+..
T Consensus 77 ~~l~~di~G~~~vk~~i~~~~~l~~~~-----~~~-~g~~vll~Gp~GtGKTtlar~ia~~l~~~~~~i~~~~~~~~~~~ 150 (543)
T 3m6a_A 77 RLLDEEHHGLEKVKERILEYLAVQKLT-----KSL-KGPILCLAGPPGVGKTSLAKSIAKSLGRKFVRISLGGVRDESEI 150 (543)
T ss_dssp GTHHHHCSSCHHHHHHHHHHHHHHHHS-----SSC-CSCEEEEESSSSSSHHHHHHHHHHHHTCEEEEECCCC-------
T ss_pred HHHHHHhccHHHHHHHHHHHHHHHHhc-----ccC-CCCEEEEECCCCCCHHHHHHHHHHhcCCCeEEEEecccchhhhh
Confidence 445678999999999998766531100 011 4568999999999999999999999999999998876543
Q ss_pred -----HHhhcchHHHHHHHHHHHhcCCeEEEEcCcchhhhhcCCcccccchhHHHHHHHHHHHHhcCCCCC---------
Q 007575 404 -----LYVGMGASRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSN--------- 469 (597)
Q Consensus 404 -----~~vG~~e~~vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~eqtLnqLL~emdg~~~~--------- 469 (597)
.++|.....+...|..+....| ||||||||.+...++. ...+.|+..|+.....
T Consensus 151 ~g~~~~~ig~~~~~~~~~~~~a~~~~~-vl~lDEid~l~~~~~~-----------~~~~~LL~~ld~~~~~~~~~~~~~~ 218 (543)
T 3m6a_A 151 RGHRRTYVGAMPGRIIQGMKKAGKLNP-VFLLDEIDKMSSDFRG-----------DPSSAMLEVLDPEQNSSFSDHYIEE 218 (543)
T ss_dssp -------------CHHHHHHTTCSSSE-EEEEEESSSCC--------------------CCGGGTCTTTTTBCCCSSSCC
T ss_pred hhHHHHHhccCchHHHHHHHHhhccCC-EEEEhhhhhhhhhhcc-----------CHHHHHHHHHhhhhcceeecccCCe
Confidence 5677777778888888876666 9999999999865432 1346677777643321
Q ss_pred ----CcEEEEEecCCCCCCChhhhCCCCcceEEEecCCCHHHHHHHHHHHHhc-----CCC-----CCCCCCCHHHHHH-
Q 007575 470 ----SAVIVLGATNRSDVLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSK-----KEL-----PLAKDIDLGDIAS- 534 (597)
Q Consensus 470 ----~~VIVIaaTNrpd~LD~aLlRpgRFd~~I~v~~Pd~~eR~eILk~~l~~-----~~~-----~l~~dvdl~~LA~- 534 (597)
..+++|+|||+++.++++|++ ||+ .+.++.|+.+++.+|++.++.. .++ .+.++ .+..++.
T Consensus 219 ~~~~~~v~iI~ttN~~~~l~~aL~~--R~~-vi~~~~~~~~e~~~Il~~~l~~~~~~~~~~~~~~i~i~~~-~l~~l~~~ 294 (543)
T 3m6a_A 219 TFDLSKVLFIATANNLATIPGPLRD--RME-IINIAGYTEIEKLEIVKDHLLPKQIKEHGLKKSNLQLRDQ-AILDIIRY 294 (543)
T ss_dssp CCBCSSCEEEEECSSTTTSCHHHHH--HEE-EEECCCCCHHHHHHHHHHTHHHHHHHHTTCCGGGCEECHH-HHHHHHHH
T ss_pred eecccceEEEeccCccccCCHHHHh--hcc-eeeeCCCCHHHHHHHHHHHHHHHHHHHcCCCcccccCCHH-HHHHHHHh
Confidence 568999999999999999999 995 7999999999999999988732 222 12222 2455554
Q ss_pred hCCCCCHHHHHHHHHH----HHHHHHhc--CCCcccHHHHHHHHHHHhcc
Q 007575 535 MTTGFTGADLANLVNE----AALLAGRL--NKVVVEKIDFIHAVERSIAV 578 (597)
Q Consensus 535 ~t~G~SgaDL~~Lv~e----Aal~A~r~--~~~~It~~d~~~Al~~v~~g 578 (597)
.+.....++|++.+.. |+..+.+. +...|+.+++++++......
T Consensus 295 ~~~~~~vR~L~~~i~~~~~~aa~~~~~~~~~~~~It~~~l~~~Lg~~~~~ 344 (543)
T 3m6a_A 295 YTREAGVRSLERQLAAICRKAAKAIVAEERKRITVTEKNLQDFIGKRIFR 344 (543)
T ss_dssp HCCCSSSHHHHHHHHHHHHHHHHHHHTTCCSCCEECTTTTHHHHCSCCSC
T ss_pred CChhhchhHHHHHHHHHHHHHHHHHHhcCCcceecCHHHHHHHhCCcccC
Confidence 3433444566555444 44444433 34579999999988654433
No 42
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=99.81 E-value=6.7e-21 Score=207.01 Aligned_cols=169 Identities=24% Similarity=0.296 Sum_probs=81.4
Q ss_pred ccccCChHHHHHHHHHHHH-hcChhHHhhcCC-CCCCceEEeCCCCChHHHHHHHHHHhcCCCeeeechhhhHH-HHhhc
Q 007575 332 ADVAGVDEAKEELEEIVEF-LRSPDKYIRLGA-RPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFVE-LYVGM 408 (597)
Q Consensus 332 ~dV~G~de~k~~L~eiv~~-l~~p~~~~~lg~-~~p~gVLL~GPPGTGKT~LArAIA~el~~pfi~is~sef~~-~~vG~ 408 (597)
++|+|++++|+.|...+.. ++.+..+..++. .+|+++||+||||||||++|+++|++++.+|+.++++.+.+ .|+|.
T Consensus 15 ~~IvGqe~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~iLl~GppGtGKT~lar~lA~~l~~~~~~v~~~~~~~~g~vG~ 94 (444)
T 1g41_A 15 QHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGK 94 (444)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHHHHSCTTTTTTCCCCCEEEECCTTSSHHHHHHHHHHHTTCCEEEEEGGGGC----CCC
T ss_pred HHhCCHHHHHHHHHHHHHHHHhhhccccccccccCCceEEEEcCCCCCHHHHHHHHHHHcCCCceeecchhhcccceeec
Confidence 3799999999999988854 333333333332 35789999999999999999999999999999999999988 48995
Q ss_pred -chHHHHHHHHHHHhcCCeEEEEcCcchhhhhcCCcccccchhHHHHHHHHHHHHhcCCCCCCcEEEEEe-cCCCCCCCh
Q 007575 409 -GASRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGA-TNRSDVLDP 486 (597)
Q Consensus 409 -~e~~vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~eqtLnqLL~emdg~~~~~~VIVIaa-TNrpd~LD~ 486 (597)
.++.++.+|..+... +++||+|.+.... .....++++++|+.+||++.+...+ +++ ||+++.||+
T Consensus 95 d~e~~lr~lf~~a~~~----~~~De~d~~~~~~-------~~~~e~rvl~~LL~~~dg~~~~~~v--~a~~TN~~~~ld~ 161 (444)
T 1g41_A 95 EVDSIIRDLTDSAMKL----VRQQEIAKNRARA-------EDVAEERILDALLPPAKNQWGEVEN--HDSHSSTRQAFRK 161 (444)
T ss_dssp CTHHHHHHHHHHHHHH----HHHHHHHSCC--------------------------------------------------
T ss_pred cHHHHHHHHHHHHHhc----chhhhhhhhhccc-------hhhHHHHHHHHHHHHhhcccccccc--ccccccCHHHHHH
Confidence 789999999998776 4589988875432 2234478999999999999776654 454 999999999
Q ss_pred hhhCCCCcceEEEecCCCHH-HHHHHHH
Q 007575 487 ALRRPGRFDRVVMVETPDKI-GREAILK 513 (597)
Q Consensus 487 aLlRpgRFd~~I~v~~Pd~~-eR~eILk 513 (597)
+|+||||||+.|+++.|+.. .|.+|+.
T Consensus 162 aL~rggr~D~~i~i~lP~~~~~~~ei~~ 189 (444)
T 1g41_A 162 KLREGQLDDKEIEIDVSAGVSMGVEIMA 189 (444)
T ss_dssp ----------------------------
T ss_pred HHHcCCCcceEEEEcCCCCccchhhhhc
Confidence 99999999999999999987 6777763
No 43
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.81 E-value=7e-19 Score=184.44 Aligned_cols=235 Identities=20% Similarity=0.252 Sum_probs=166.1
Q ss_pred cccccccCChHHHHHHHHHHHHhcChhHHhhcCCCCCCceEEeCCCCChHHHHHHHHHHhc-----------CCCeeeec
Q 007575 329 ITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEA-----------EVPFISCS 397 (597)
Q Consensus 329 vtf~dV~G~de~k~~L~eiv~~l~~p~~~~~lg~~~p~gVLL~GPPGTGKT~LArAIA~el-----------~~pfi~is 397 (597)
...++++|.++..+.|.+.+..... ...+.+++|+||||||||++|+++++++ +.+++.++
T Consensus 17 ~~p~~l~gr~~~~~~l~~~l~~~~~--------~~~~~~vll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~~~i~ 88 (384)
T 2qby_B 17 SVFKEIPFREDILRDAAIAIRYFVK--------NEVKFSNLFLGLTGTGKTFVSKYIFNEIEEVKKEDEEYKDVKQAYVN 88 (384)
T ss_dssp HHCSSCTTCHHHHHHHHHHHHHHHT--------TCCCCEEEEEECTTSSHHHHHHHHHHHHHHHHHHSSSSTTCEEEEEE
T ss_pred cCCCCCCChHHHHHHHHHHHHHHHc--------CCCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhhhcCCCCceEEEEE
Confidence 3458899999999999888765322 2346689999999999999999999987 89999999
Q ss_pred hhhhH-H----------HH-------hhcchH-HHHHHHHHHHhcCCeEEEEcCcchhhhhcCCcccccchhHHHHH-HH
Q 007575 398 ASEFV-E----------LY-------VGMGAS-RVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQT-LN 457 (597)
Q Consensus 398 ~sef~-~----------~~-------vG~~e~-~vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~eqt-Ln 457 (597)
|.... . .. .+.... .+..++..+... ++||||||+|.+...... .. +.
T Consensus 89 ~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~-~~vlilDEi~~l~~~~~~-----------~~~l~ 156 (384)
T 2qby_B 89 CREVGGTPQAVLSSLAGKLTGFSVPKHGINLGEYIDKIKNGTRNI-RAIIYLDEVDTLVKRRGG-----------DIVLY 156 (384)
T ss_dssp HHHHCSCHHHHHHHHHHHHHCSCCCSSSSCTHHHHHHHHHHHSSS-CEEEEEETTHHHHHSTTS-----------HHHHH
T ss_pred CccCCCCHHHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHhccC-CCEEEEECHHHhccCCCC-----------ceeHH
Confidence 87643 1 11 111122 244444444333 449999999999754311 12 34
Q ss_pred HHHHHhcCCCCCCcEEEEEecCCC---CCCChhhhCCCCcceEEEecCCCHHHHHHHHHHHHhc--CCCCCCCCCCHHHH
Q 007575 458 QLLTEMDGFDSNSAVIVLGATNRS---DVLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSK--KELPLAKDIDLGDI 532 (597)
Q Consensus 458 qLL~emdg~~~~~~VIVIaaTNrp---d~LD~aLlRpgRFd~~I~v~~Pd~~eR~eILk~~l~~--~~~~l~~dvdl~~L 532 (597)
.|+..+ .++.+|++||.+ +.+++++.+ ||+..+.+++|+.++..+|++.++.. .+..+.++ .++.+
T Consensus 157 ~l~~~~------~~~~iI~~t~~~~~~~~l~~~l~s--r~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~~~-~~~~i 227 (384)
T 2qby_B 157 QLLRSD------ANISVIMISNDINVRDYMEPRVLS--SLGPSVIFKPYDAEQLKFILSKYAEYGLIKGTYDDE-ILSYI 227 (384)
T ss_dssp HHHTSS------SCEEEEEECSSTTTTTTSCHHHHH--TCCCEEEECCCCHHHHHHHHHHHHHHTSCTTSCCSH-HHHHH
T ss_pred HHhcCC------cceEEEEEECCCchHhhhCHHHHh--cCCCeEEECCCCHHHHHHHHHHHHHhhcccCCcCHH-HHHHH
Confidence 444332 678899999987 678999988 88779999999999999999998863 22334443 36778
Q ss_pred HHhCCC--CCHHHHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHhccccccc-cccchhhhhhc
Q 007575 533 ASMTTG--FTGADLANLVNEAALLAGRLNKVVVEKIDFIHAVERSIAVSLSLS-LSLSLQASISL 594 (597)
Q Consensus 533 A~~t~G--~SgaDL~~Lv~eAal~A~r~~~~~It~~d~~~Al~~v~~g~~k~s-~~ls~q~~l~l 594 (597)
++.+.+ -..+.+.++++.|...|. +...|+.+|+..|+++.......+. ..++.++..++
T Consensus 228 ~~~~~~~~G~~r~a~~~l~~a~~~a~--~~~~i~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~~l 290 (384)
T 2qby_B 228 AAISAKEHGDARKAVNLLFRAAQLAS--GGGIIRKEHVDKAIVDYEQERLIEAVKALPFHYKLAL 290 (384)
T ss_dssp HHHHHTTCCCHHHHHHHHHHHHHHTT--SSSCCCHHHHHHHHHHHHHHHHHHHHHSSCHHHHHHH
T ss_pred HHHHHhccCCHHHHHHHHHHHHHHhc--CCCccCHHHHHHHHHHHhcchHHHHHHcCCHHHHHHH
Confidence 877762 256788899999988886 6678999999999988764332222 23455555544
No 44
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=99.81 E-value=3.9e-19 Score=183.97 Aligned_cols=220 Identities=19% Similarity=0.230 Sum_probs=153.1
Q ss_pred CCccccccc-CC--hHHHHHHHHHHHHhcChhHHhhcCCCCCCceEEeCCCCChHHHHHHHHHHhc---CCCeeeechhh
Q 007575 327 DTITFADVA-GV--DEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEA---EVPFISCSASE 400 (597)
Q Consensus 327 ~~vtf~dV~-G~--de~k~~L~eiv~~l~~p~~~~~lg~~~p~gVLL~GPPGTGKT~LArAIA~el---~~pfi~is~se 400 (597)
+..+|++++ |. ..+...+..+++ .+ ...+.+++|+||||||||+||+++++++ +.+++++++.+
T Consensus 6 ~~~~f~~fv~g~~~~~a~~~~~~~~~---~~-------~~~~~~lll~G~~GtGKT~la~~i~~~~~~~~~~~~~i~~~~ 75 (324)
T 1l8q_A 6 PKYTLENFIVGEGNRLAYEVVKEALE---NL-------GSLYNPIFIYGSVGTGKTHLLQAAGNEAKKRGYRVIYSSADD 75 (324)
T ss_dssp TTCCSSSCCCCTTTHHHHHHHHHHHH---TT-------TTSCSSEEEECSSSSSHHHHHHHHHHHHHHTTCCEEEEEHHH
T ss_pred CCCCcccCCCCCcHHHHHHHHHHHHh---Cc-------CCCCCeEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEHHH
Confidence 567899997 43 333333443332 22 1245689999999999999999999988 89999999999
Q ss_pred hHHHHhhcchHHHHHHHHHHHhcCCeEEEEcCcchhhhhcCCcccccchhHHHHHHHHHHHHhcCCCCCCcEEEEEecCC
Q 007575 401 FVELYVGMGASRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATNR 480 (597)
Q Consensus 401 f~~~~vG~~e~~vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~eqtLnqLL~emdg~~~~~~VIVIaaTNr 480 (597)
+...+.+.........|..... .++||||||+|.+...+. ....++..++........+|+++++.
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~-~~~vL~iDEi~~l~~~~~-------------~~~~l~~~l~~~~~~~~~iii~~~~~ 141 (324)
T 1l8q_A 76 FAQAMVEHLKKGTINEFRNMYK-SVDLLLLDDVQFLSGKER-------------TQIEFFHIFNTLYLLEKQIILASDRH 141 (324)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHH-TCSEEEEECGGGGTTCHH-------------HHHHHHHHHHHHHHTTCEEEEEESSC
T ss_pred HHHHHHHHHHcCcHHHHHHHhc-CCCEEEEcCcccccCChH-------------HHHHHHHHHHHHHHCCCeEEEEecCC
Confidence 8776655433322233433332 378999999999864211 11222222222112344677777777
Q ss_pred CC---CCChhhhCCCCcc--eEEEecCCCHHHHHHHHHHHHhcCCCCCCCCCCHHHHHHhCCCCCHHHHHHHHHHHHHH-
Q 007575 481 SD---VLDPALRRPGRFD--RVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTTGFTGADLANLVNEAALL- 554 (597)
Q Consensus 481 pd---~LD~aLlRpgRFd--~~I~v~~Pd~~eR~eILk~~l~~~~~~l~~dvdl~~LA~~t~G~SgaDL~~Lv~eAal~- 554 (597)
+. .++++|.+ ||+ ..+.+++ +.+++.+|++.++...++.+.+++ ++.|+..+ | +.+++.++++.++..
T Consensus 142 ~~~l~~l~~~L~s--R~~~~~~i~l~~-~~~e~~~il~~~~~~~~~~l~~~~-l~~l~~~~-g-~~r~l~~~l~~~~~~~ 215 (324)
T 1l8q_A 142 PQKLDGVSDRLVS--RFEGGILVEIEL-DNKTRFKIIKEKLKEFNLELRKEV-IDYLLENT-K-NVREIEGKIKLIKLKG 215 (324)
T ss_dssp GGGCTTSCHHHHH--HHHTSEEEECCC-CHHHHHHHHHHHHHHTTCCCCHHH-HHHHHHHC-S-SHHHHHHHHHHHHHHC
T ss_pred hHHHHHhhhHhhh--cccCceEEEeCC-CHHHHHHHHHHHHHhcCCCCCHHH-HHHHHHhC-C-CHHHHHHHHHHHHHcC
Confidence 65 68999998 886 6889999 999999999999987777776664 88899998 4 788999999987765
Q ss_pred --HHh-cCCCcc-cHHHHHHHHHHHh
Q 007575 555 --AGR-LNKVVV-EKIDFIHAVERSI 576 (597)
Q Consensus 555 --A~r-~~~~~I-t~~d~~~Al~~v~ 576 (597)
+.. .+...| +.+++.+++....
T Consensus 216 ~~~l~~~~~~~i~t~~~i~~~~~~~~ 241 (324)
T 1l8q_A 216 FEGLERKERKERDKLMQIVEFVANYY 241 (324)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhccccccCCCCHHHHHHHHHHHh
Confidence 111 223458 8889888877653
No 45
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=99.80 E-value=5.4e-19 Score=183.27 Aligned_cols=223 Identities=19% Similarity=0.258 Sum_probs=145.8
Q ss_pred CCCCcccccccCChHHHHHHHHHHHHhcChhHHhhcCCCCCCceEEeCCCCChHHHHHHHHHHhcC-------CCe----
Q 007575 325 QGDTITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAE-------VPF---- 393 (597)
Q Consensus 325 ~~~~vtf~dV~G~de~k~~L~eiv~~l~~p~~~~~lg~~~p~gVLL~GPPGTGKT~LArAIA~el~-------~pf---- 393 (597)
..+..+|++++|.+++++.+..... .+ .+.++||+||||||||++|++++..++ .+|
T Consensus 17 ~~~~~~f~~i~G~~~~~~~l~~~~~---~~---------~~~~vLl~G~~GtGKT~la~~la~~~~~~~~~~~~~~~~~~ 84 (350)
T 1g8p_A 17 TRPVFPFSAIVGQEDMKLALLLTAV---DP---------GIGGVLVFGDRGTGKSTAVRALAALLPEIEAVEGCPVSSPN 84 (350)
T ss_dssp -CCCCCGGGSCSCHHHHHHHHHHHH---CG---------GGCCEEEECCGGGCTTHHHHHHHHHSCCEEEETTCTTCCSS
T ss_pred CCCCCCchhccChHHHHHHHHHHhh---CC---------CCceEEEECCCCccHHHHHHHHHHhCccccccccccccccc
Confidence 3456889999999997765433221 11 133699999999999999999999876 232
Q ss_pred ----------------------eeechhhhHHHHhhcchHHHHHHHHHH---------HhcCCeEEEEcCcchhhhhcCC
Q 007575 394 ----------------------ISCSASEFVELYVGMGASRVRDLFARA---------KKEAPSIIFIDEIDAVAKSRDG 442 (597)
Q Consensus 394 ----------------------i~is~sef~~~~vG~~e~~vr~lF~~A---------~~~aP~ILfIDEIDaL~~~r~~ 442 (597)
+.+..........|.. .+...+... ....++||||||||.+...
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~--~~~~~~~~~~~~~~~g~~~~a~~~vl~iDEi~~l~~~--- 159 (350)
T 1g8p_A 85 VEMIPDWATVLSTNVIRKPTPVVDLPLGVSEDRVVGAL--DIERAISKGEKAFEPGLLARANRGYLYIDECNLLEDH--- 159 (350)
T ss_dssp GGGSCTTCCCSCCCEEEECCCEEEECTTCCHHHHHCEE--CHHHHHHHCGGGEECCHHHHHTTEEEEETTGGGSCHH---
T ss_pred cccccchhhhhccccccCCCcccccCCCcchhhheeec--hhhhhhcCCceeecCceeeecCCCEEEEeChhhCCHH---
Confidence 1111111011112210 011112111 0113679999999988533
Q ss_pred cccccchhHHHHHHHHHHHHhcC----CC-------CCCcEEEEEecCCCC-CCChhhhCCCCcceEEEecCC-CHHHHH
Q 007575 443 RFRIVSNDEREQTLNQLLTEMDG----FD-------SNSAVIVLGATNRSD-VLDPALRRPGRFDRVVMVETP-DKIGRE 509 (597)
Q Consensus 443 ~~~~~~~~e~eqtLnqLL~emdg----~~-------~~~~VIVIaaTNrpd-~LD~aLlRpgRFd~~I~v~~P-d~~eR~ 509 (597)
..+.|+..|+. +. ....+++|++||..+ .++++|++ ||+.++.++.| +.+++.
T Consensus 160 ------------~~~~Ll~~le~~~~~~~~~g~~~~~~~~~~li~~~n~~~~~l~~~L~~--R~~~~~~l~~~~~~~~~~ 225 (350)
T 1g8p_A 160 ------------IVDLLLDVAQSGENVVERDGLSIRHPARFVLVGSGNPEEGDLRPQLLD--RFGLSVEVLSPRDVETRV 225 (350)
T ss_dssp ------------HHHHHHHHHHHSEEEECCTTCCEEEECCEEEEEEECSCSCCCCHHHHT--TCSEEEECCCCCSHHHHH
T ss_pred ------------HHHHHHHHHhcCceEEEecceEEeeCCceEEEEEeCCCCCCCCHHHHh--hcceEEEcCCCCcHHHHH
Confidence 23455554442 11 123689999999754 89999999 99988999999 677777
Q ss_pred HHHHHHHh-----------------------------cCCCCCCCCCCHHHHHHhCCC---CCHHHHHHHHHHHHHHHHh
Q 007575 510 AILKVHVS-----------------------------KKELPLAKDIDLGDIASMTTG---FTGADLANLVNEAALLAGR 557 (597)
Q Consensus 510 eILk~~l~-----------------------------~~~~~l~~dvdl~~LA~~t~G---~SgaDL~~Lv~eAal~A~r 557 (597)
+|++.++. ..++.+.++ .++.|+....+ -+.+.+.++++.|...|..
T Consensus 226 ~il~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ls~~-~~~~l~~~~~~~~~~~~R~~~~ll~~a~~~A~~ 304 (350)
T 1g8p_A 226 EVIRRRDTYDADPKAFLEEWRPKDMDIRNQILEARERLPKVEAPNT-ALYDCAALCIALGSDGLRGELTLLRSARALAAL 304 (350)
T ss_dssp HHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHGGGCBCCHH-HHHHHHHHHHHSSSCSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcccCchhhccccccchHHHHHHHHHHHHhCCCCCCCHH-HHHHHHHHHHHhCCCCccHHHHHHHHHHHHHHH
Confidence 88866311 112334433 25566655543 2679999999999999988
Q ss_pred cCCCcccHHHHHHHHHHHhccc
Q 007575 558 LNKVVVEKIDFIHAVERSIAVS 579 (597)
Q Consensus 558 ~~~~~It~~d~~~Al~~v~~g~ 579 (597)
++...|+.+|+.+|+..++...
T Consensus 305 ~~~~~v~~~~v~~a~~~~l~~r 326 (350)
T 1g8p_A 305 EGATAVGRDHLKRVATMALSHR 326 (350)
T ss_dssp TTCSBCCHHHHHHHHHHHHGGG
T ss_pred cCCCcCCHHHHHHHHHHHHhhc
Confidence 8888999999999999887554
No 46
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=99.80 E-value=4.2e-19 Score=193.49 Aligned_cols=207 Identities=25% Similarity=0.316 Sum_probs=155.1
Q ss_pred CCCcccccccCChHHH---HHHHHHHHHhcChhHHhhcCCCCCCceEEeCCCCChHHHHHHHHHHhcCCCeeeechhhhH
Q 007575 326 GDTITFADVAGVDEAK---EELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFV 402 (597)
Q Consensus 326 ~~~vtf~dV~G~de~k---~~L~eiv~~l~~p~~~~~lg~~~p~gVLL~GPPGTGKT~LArAIA~el~~pfi~is~sef~ 402 (597)
..+.+|++++|+++++ ..|...+..- ...++||+||||||||++|+++++.++.+|+.+++..
T Consensus 20 ~rP~~l~~ivGq~~~~~~~~~L~~~i~~~------------~~~~vLL~GppGtGKTtlAr~ia~~~~~~f~~l~a~~-- 85 (447)
T 3pvs_A 20 MRPENLAQYIGQQHLLAAGKPLPRAIEAG------------HLHSMILWGPPGTGKTTLAEVIARYANADVERISAVT-- 85 (447)
T ss_dssp TCCCSTTTCCSCHHHHSTTSHHHHHHHHT------------CCCEEEEECSTTSSHHHHHHHHHHHTTCEEEEEETTT--
T ss_pred hCCCCHHHhCCcHHHHhchHHHHHHHHcC------------CCcEEEEECCCCCcHHHHHHHHHHHhCCCeEEEEecc--
Confidence 3456899999999998 5666666521 1257999999999999999999999999999998743
Q ss_pred HHHhhcchHHHHHHHHHHHh----cCCeEEEEcCcchhhhhcCCcccccchhHHHHHHHHHHHHhcCCCCCCcEEEEEec
Q 007575 403 ELYVGMGASRVRDLFARAKK----EAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGAT 478 (597)
Q Consensus 403 ~~~vG~~e~~vr~lF~~A~~----~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~eqtLnqLL~emdg~~~~~~VIVIaaT 478 (597)
.+.+.++.++..+.. ..++||||||||.+....+ +.|+..|+. ..+++|++|
T Consensus 86 -----~~~~~ir~~~~~a~~~~~~~~~~iLfIDEI~~l~~~~q---------------~~LL~~le~----~~v~lI~at 141 (447)
T 3pvs_A 86 -----SGVKEIREAIERARQNRNAGRRTILFVDEVHRFNKSQQ---------------DAFLPHIED----GTITFIGAT 141 (447)
T ss_dssp -----CCHHHHHHHHHHHHHHHHTTCCEEEEEETTTCC---------------------CCHHHHHT----TSCEEEEEE
T ss_pred -----CCHHHHHHHHHHHHHhhhcCCCcEEEEeChhhhCHHHH---------------HHHHHHHhc----CceEEEecC
Confidence 344566777776653 4678999999999864432 456677763 346777666
Q ss_pred --CCCCCCChhhhCCCCcceEEEecCCCHHHHHHHHHHHHhcC-------CCCCCCCCCHHHHHHhCCCCCHHHHHHHHH
Q 007575 479 --NRSDVLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKK-------ELPLAKDIDLGDIASMTTGFTGADLANLVN 549 (597)
Q Consensus 479 --Nrpd~LD~aLlRpgRFd~~I~v~~Pd~~eR~eILk~~l~~~-------~~~l~~dvdl~~LA~~t~G~SgaDL~~Lv~ 549 (597)
|....++++|++ |+. ++.+++|+.+++.++++.++... +..+.++ .++.|+..+.| +.+++.++++
T Consensus 142 t~n~~~~l~~aL~s--R~~-v~~l~~l~~edi~~il~~~l~~~~~~~~~~~~~i~~~-al~~L~~~~~G-d~R~lln~Le 216 (447)
T 3pvs_A 142 TENPSFELNSALLS--RAR-VYLLKSLSTEDIEQVLTQAMEDKTRGYGGQDIVLPDE-TRRAIAELVNG-DARRALNTLE 216 (447)
T ss_dssp SSCGGGSSCHHHHT--TEE-EEECCCCCHHHHHHHHHHHHHCTTTSSTTSSEECCHH-HHHHHHHHHCS-CHHHHHHHHH
T ss_pred CCCcccccCHHHhC--cee-EEeeCCcCHHHHHHHHHHHHHHHhhhhccccCcCCHH-HHHHHHHHCCC-CHHHHHHHHH
Confidence 444689999999 886 78899999999999999998762 2233333 37888888665 7889999999
Q ss_pred HHHHHHHhc--CCCcccHHHHHHHHHHH
Q 007575 550 EAALLAGRL--NKVVVEKIDFIHAVERS 575 (597)
Q Consensus 550 eAal~A~r~--~~~~It~~d~~~Al~~v 575 (597)
.|+..+... +...|+.+++++++.+.
T Consensus 217 ~a~~~a~~~~~~~~~It~e~v~~~l~~~ 244 (447)
T 3pvs_A 217 MMADMAEVDDSGKRVLKPELLTEIAGER 244 (447)
T ss_dssp HHHHHSCBCTTSCEECCHHHHHHHHTCC
T ss_pred HHHHhcccccCCCCccCHHHHHHHHhhh
Confidence 999887533 45679999999887654
No 47
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=99.79 E-value=7.9e-19 Score=171.01 Aligned_cols=207 Identities=15% Similarity=0.102 Sum_probs=143.0
Q ss_pred CCcccccccCCh---HHHHHHHHHHHHhcChhHHhhcCCCCCCceEEeCCCCChHHHHHHHHHHhc---CCCeeeechhh
Q 007575 327 DTITFADVAGVD---EAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEA---EVPFISCSASE 400 (597)
Q Consensus 327 ~~vtf~dV~G~d---e~k~~L~eiv~~l~~p~~~~~lg~~~p~gVLL~GPPGTGKT~LArAIA~el---~~pfi~is~se 400 (597)
+..+|++++|.. ++.+.|..++. . ..+.+++|+||||||||++|++++.++ +.+++.+++.+
T Consensus 23 ~~~~~~~~~~~~~~~~~~~~l~~~~~---~---------~~~~~~ll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~ 90 (242)
T 3bos_A 23 DDETFTSYYPAAGNDELIGALKSAAS---G---------DGVQAIYLWGPVKSGRTHLIHAACARANELERRSFYIPLGI 90 (242)
T ss_dssp TTCSTTTSCC--CCHHHHHHHHHHHH---T---------CSCSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEGGG
T ss_pred CCCChhhccCCCCCHHHHHHHHHHHh---C---------CCCCeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEHHH
Confidence 347899999733 44444444332 1 145689999999999999999999876 47888898887
Q ss_pred hHHHHhhcchHHHHHHHHHHHhcCCeEEEEcCcchhhhhcCCcccccchhHHHHHHHHHHHHhcCCCCCCcE-EEEEecC
Q 007575 401 FVELYVGMGASRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAV-IVLGATN 479 (597)
Q Consensus 401 f~~~~vG~~e~~vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~eqtLnqLL~emdg~~~~~~V-IVIaaTN 479 (597)
+...+.. .+.. ...+++|+|||+|.+.... . ..+.|+..++.......+ +|++++.
T Consensus 91 ~~~~~~~--------~~~~--~~~~~vliiDe~~~~~~~~----------~---~~~~l~~~l~~~~~~~~~~ii~~~~~ 147 (242)
T 3bos_A 91 HASISTA--------LLEG--LEQFDLICIDDVDAVAGHP----------L---WEEAIFDLYNRVAEQKRGSLIVSASA 147 (242)
T ss_dssp GGGSCGG--------GGTT--GGGSSEEEEETGGGGTTCH----------H---HHHHHHHHHHHHHHHCSCEEEEEESS
T ss_pred HHHHHHH--------HHHh--ccCCCEEEEeccccccCCH----------H---HHHHHHHHHHHHHHcCCCeEEEEcCC
Confidence 7543211 1111 1346799999999985321 0 112233332222122333 5555555
Q ss_pred CCC---CCChhhhCCCCcc--eEEEecCCCHHHHHHHHHHHHhcCCCCCCCCCCHHHHHHhCCCCCHHHHHHHHHHHHHH
Q 007575 480 RSD---VLDPALRRPGRFD--RVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTTGFTGADLANLVNEAALL 554 (597)
Q Consensus 480 rpd---~LD~aLlRpgRFd--~~I~v~~Pd~~eR~eILk~~l~~~~~~l~~dvdl~~LA~~t~G~SgaDL~~Lv~eAal~ 554 (597)
.++ .+++++.+ ||. ..+.+++|+.+++.+++..++...+..+.++ .++.++..+.| +.+++.++++.+...
T Consensus 148 ~~~~~~~~~~~l~~--r~~~~~~i~l~~~~~~~~~~~l~~~~~~~~~~~~~~-~~~~l~~~~~g-~~r~l~~~l~~~~~~ 223 (242)
T 3bos_A 148 SPMEAGFVLPDLVS--RMHWGLTYQLQPMMDDEKLAALQRRAAMRGLQLPED-VGRFLLNRMAR-DLRTLFDVLDRLDKA 223 (242)
T ss_dssp CTTTTTCCCHHHHH--HHHHSEEEECCCCCGGGHHHHHHHHHHHTTCCCCHH-HHHHHHHHTTT-CHHHHHHHHHHHHHH
T ss_pred CHHHHHHhhhhhhh--HhhcCceEEeCCCCHHHHHHHHHHHHHHcCCCCCHH-HHHHHHHHccC-CHHHHHHHHHHHHHH
Confidence 454 45688988 775 8999999999999999999998766666555 47888888865 789999999999988
Q ss_pred HHhcCCCcccHHHHHHHHH
Q 007575 555 AGRLNKVVVEKIDFIHAVE 573 (597)
Q Consensus 555 A~r~~~~~It~~d~~~Al~ 573 (597)
|...+ ..|+.++++++++
T Consensus 224 a~~~~-~~It~~~v~~~l~ 241 (242)
T 3bos_A 224 SMVHQ-RKLTIPFVKEMLR 241 (242)
T ss_dssp HHHHT-CCCCHHHHHHHHT
T ss_pred HHHhC-CCCcHHHHHHHhh
Confidence 86555 4699999988864
No 48
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=99.79 E-value=8.9e-19 Score=181.62 Aligned_cols=215 Identities=19% Similarity=0.150 Sum_probs=151.3
Q ss_pred cccccCChHHHHHHHHHHHHhcChhHHhhcCCCCCCceEEeCCCCChHHHHHHHHHHhcCCCeeeechhhh--HHHHhhc
Q 007575 331 FADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEF--VELYVGM 408 (597)
Q Consensus 331 f~dV~G~de~k~~L~eiv~~l~~p~~~~~lg~~~p~gVLL~GPPGTGKT~LArAIA~el~~pfi~is~sef--~~~~vG~ 408 (597)
+++++|++++++.+...+.. +.++||+||||||||++|+++|+.++.+++.+++... .....|.
T Consensus 26 ~~~i~g~~~~~~~l~~~l~~--------------~~~vll~G~pGtGKT~la~~la~~~~~~~~~i~~~~~~~~~~l~g~ 91 (331)
T 2r44_A 26 GKVVVGQKYMINRLLIGICT--------------GGHILLEGVPGLAKTLSVNTLAKTMDLDFHRIQFTPDLLPSDLIGT 91 (331)
T ss_dssp TTTCCSCHHHHHHHHHHHHH--------------TCCEEEESCCCHHHHHHHHHHHHHTTCCEEEEECCTTCCHHHHHEE
T ss_pred ccceeCcHHHHHHHHHHHHc--------------CCeEEEECCCCCcHHHHHHHHHHHhCCCeEEEecCCCCChhhcCCc
Confidence 56799999998877766542 2479999999999999999999999999998887311 1112221
Q ss_pred chHH-HHHHHHHHHhcC---CeEEEEcCcchhhhhcCCcccccchhHHHHHHHHHHHHhcCC---------CCCCcEEEE
Q 007575 409 GASR-VRDLFARAKKEA---PSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGF---------DSNSAVIVL 475 (597)
Q Consensus 409 ~e~~-vr~lF~~A~~~a---P~ILfIDEIDaL~~~r~~~~~~~~~~e~eqtLnqLL~emdg~---------~~~~~VIVI 475 (597)
.... ....|. .... .+||||||+|.+... +.+.|+..|+.. ..+..++||
T Consensus 92 ~~~~~~~~~~~--~~~g~l~~~vl~iDEi~~~~~~---------------~~~~Ll~~l~~~~~~~~g~~~~~~~~~~vi 154 (331)
T 2r44_A 92 MIYNQHKGNFE--VKKGPVFSNFILADEVNRSPAK---------------VQSALLECMQEKQVTIGDTTYPLDNPFLVL 154 (331)
T ss_dssp EEEETTTTEEE--EEECTTCSSEEEEETGGGSCHH---------------HHHHHHHHHHHSEEEETTEEEECCSSCEEE
T ss_pred eeecCCCCceE--eccCcccccEEEEEccccCCHH---------------HHHHHHHHHhcCceeeCCEEEECCCCEEEE
Confidence 1000 000000 0112 269999999987432 345566666532 124467888
Q ss_pred EecCCCC-----CCChhhhCCCCcceEEEecCCCHHHHHHHHHHHHhcC----------------------CCCCCCCCC
Q 007575 476 GATNRSD-----VLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKK----------------------ELPLAKDID 528 (597)
Q Consensus 476 aaTNrpd-----~LD~aLlRpgRFd~~I~v~~Pd~~eR~eILk~~l~~~----------------------~~~l~~dvd 528 (597)
+|+|..+ .++++|++ ||+.++.++.|+.+++.+|++.++... ++.+.+++
T Consensus 155 at~np~~~~~~~~l~~~l~~--Rf~~~i~i~~p~~~~~~~il~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~v~~~~~~- 231 (331)
T 2r44_A 155 ATQNPVEQEGTYPLPEAQVD--RFMMKIHLTYLDKESELEVMRRVSNMNFNYQVQKIVSKNDVLEIRNEINKVTISESL- 231 (331)
T ss_dssp EEECTTCCSCCCCCCHHHHT--TSSEEEECCCCCHHHHHHHHHHHHCTTCCCCCCCCSCHHHHHHHHHHHHTCBCCHHH-
T ss_pred EecCCCcccCcccCCHHHHh--heeEEEEcCCCCHHHHHHHHHhccccCcchhccccCCHHHHHHHHHHhccCCCCHHH-
Confidence 8888553 38999999 999899999999999999999987542 12222221
Q ss_pred HHHHHHhC-------------------CCCCHHHHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHhccc
Q 007575 529 LGDIASMT-------------------TGFTGADLANLVNEAALLAGRLNKVVVEKIDFIHAVERSIAVS 579 (597)
Q Consensus 529 l~~LA~~t-------------------~G~SgaDL~~Lv~eAal~A~r~~~~~It~~d~~~Al~~v~~g~ 579 (597)
++.++... .|.|++.+.++++.|...|...+...|+.+|+.+++..++...
T Consensus 232 ~~~i~~~~~~~r~~~~~~~~~~~~~~~~~~s~R~~~~ll~~a~a~A~l~g~~~v~~~dv~~~~~~vl~~r 301 (331)
T 2r44_A 232 EKYIIELVFATRFPAEYGLEAEASYILYGASTRAAINLNRVAKAMAFFNNRDYVLPEDIKEVAYDILNHR 301 (331)
T ss_dssp HHHHHHHHHHHHSGGGGTCHHHHHHEEECCCHHHHHHHHHHHHHHHHHTTCSBCCHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHhccccccccccccccccCcChhHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhHhh
Confidence 34443321 2568999999999999999999999999999999999987544
No 49
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=99.79 E-value=2.7e-18 Score=165.38 Aligned_cols=209 Identities=20% Similarity=0.217 Sum_probs=149.6
Q ss_pred CCcccccccCChHHHHHHHHHHHHhcChhHHhhcCCCCCCceEEeCCCCChHHHHHHHHHHhcCCCeee--ech------
Q 007575 327 DTITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFIS--CSA------ 398 (597)
Q Consensus 327 ~~vtf~dV~G~de~k~~L~eiv~~l~~p~~~~~lg~~~p~gVLL~GPPGTGKT~LArAIA~el~~pfi~--is~------ 398 (597)
.+..|++++|.+++++.|.+.+.. ...+..++|+||||||||++|++++++++..... ..+
T Consensus 18 ~p~~~~~~~g~~~~~~~l~~~l~~-----------~~~~~~~ll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (250)
T 1njg_A 18 RPQTFADVVGQEHVLTALANGLSL-----------GRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCDNC 86 (250)
T ss_dssp CCCSGGGCCSCHHHHHHHHHHHHH-----------TCCCSEEEEECSTTSCHHHHHHHHHHHHHCTTCSCSSCCSCSHHH
T ss_pred CCccHHHHhCcHHHHHHHHHHHHc-----------CCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCcccHHH
Confidence 456788999999999888887753 1234579999999999999999999887432211 000
Q ss_pred hhhHH--------H--HhhcchHHHHHHHHHHH----hcCCeEEEEcCcchhhhhcCCcccccchhHHHHHHHHHHHHhc
Q 007575 399 SEFVE--------L--YVGMGASRVRDLFARAK----KEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMD 464 (597)
Q Consensus 399 sef~~--------~--~vG~~e~~vr~lF~~A~----~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~eqtLnqLL~emd 464 (597)
..+.. . ........++.+++.+. ...+.+|+|||+|.+.. ..++.|+..++
T Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlviDe~~~l~~---------------~~~~~l~~~l~ 151 (250)
T 1njg_A 87 REIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSR---------------HSFNALLKTLE 151 (250)
T ss_dssp HHHHTTCCSSEEEEETTCGGGHHHHHHHHHSCCCSCSSSSSEEEEEETGGGSCH---------------HHHHHHHHHHH
T ss_pred HHHhccCCcceEEecCcccccHHHHHHHHHHhhhchhcCCceEEEEECcccccH---------------HHHHHHHHHHh
Confidence 00000 0 00012233455555443 23478999999998742 24466777776
Q ss_pred CCCCCCcEEEEEecCCCCCCChhhhCCCCcceEEEecCCCHHHHHHHHHHHHhcCCCCCCCCCCHHHHHHhCCCCCHHHH
Q 007575 465 GFDSNSAVIVLGATNRSDVLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTTGFTGADL 544 (597)
Q Consensus 465 g~~~~~~VIVIaaTNrpd~LD~aLlRpgRFd~~I~v~~Pd~~eR~eILk~~l~~~~~~l~~dvdl~~LA~~t~G~SgaDL 544 (597)
.. ..++++|++||.++.+++++.+ |+ ..+.+++|+.++..++++.++...+..+.++ .++.+++.+.| +++++
T Consensus 152 ~~--~~~~~~i~~t~~~~~~~~~l~~--r~-~~i~l~~l~~~e~~~~l~~~~~~~~~~~~~~-~~~~l~~~~~G-~~~~~ 224 (250)
T 1njg_A 152 EP--PEHVKFLLATTDPQKLPVTILS--RC-LQFHLKALDVEQIRHQLEHILNEEHIAHEPR-ALQLLARAAEG-SLRDA 224 (250)
T ss_dssp SC--CTTEEEEEEESCGGGSCHHHHT--TS-EEEECCCCCHHHHHHHHHHHHHHTTCCBCHH-HHHHHHHHHTT-CHHHH
T ss_pred cC--CCceEEEEEeCChHhCCHHHHH--Hh-hhccCCCCCHHHHHHHHHHHHHhcCCCCCHH-HHHHHHHHcCC-CHHHH
Confidence 43 4568888899999999999988 76 5899999999999999999987766555544 47889999977 78999
Q ss_pred HHHHHHHHHHHHhcCCCcccHHHHHHHH
Q 007575 545 ANLVNEAALLAGRLNKVVVEKIDFIHAV 572 (597)
Q Consensus 545 ~~Lv~eAal~A~r~~~~~It~~d~~~Al 572 (597)
.++++.|+..+ ...|+.+|+++++
T Consensus 225 ~~~~~~~~~~~----~~~i~~~~v~~~~ 248 (250)
T 1njg_A 225 LSLTDQAIASG----DGQVSTQAVSAML 248 (250)
T ss_dssp HHHHHHHHTTT----TSSBCHHHHHHHS
T ss_pred HHHHHHHHhcc----CceecHHHHHHHh
Confidence 99999886433 3479999998875
No 50
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.78 E-value=2.7e-18 Score=178.70 Aligned_cols=244 Identities=19% Similarity=0.263 Sum_probs=169.3
Q ss_pred CCcccccccCChHHHHHHHHHHHHhcChhHHhhcCCCCCCceEEeCCCCChHHHHHHHHHHhc------CCCeeeechhh
Q 007575 327 DTITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEA------EVPFISCSASE 400 (597)
Q Consensus 327 ~~vtf~dV~G~de~k~~L~eiv~~l~~p~~~~~lg~~~p~gVLL~GPPGTGKT~LArAIA~el------~~pfi~is~se 400 (597)
+...+++++|.++..+.|.+.+..... ...+..++|+||||||||+|++++++++ +.+++.++|..
T Consensus 15 ~~~~p~~~~gr~~e~~~l~~~l~~~~~--------~~~~~~vli~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~i~~~~ 86 (386)
T 2qby_A 15 PDYIPDELPHREDQIRKIASILAPLYR--------EEKPNNIFIYGLTGTGKTAVVKFVLSKLHKKFLGKFKHVYINTRQ 86 (386)
T ss_dssp SSCCCSCCTTCHHHHHHHHHSSGGGGG--------TCCCCCEEEEECTTSSHHHHHHHHHHHHHHHTCSSCEEEEEEHHH
T ss_pred CccCCCCCCChHHHHHHHHHHHHHHHc--------CCCCCeEEEECCCCCCHHHHHHHHHHHHHHHhcCCceEEEEECCC
Confidence 345568899999988777776543211 2346689999999999999999999988 88999999864
Q ss_pred hHH------HH----------hhcchHH-HHHHHHHHHhcC-CeEEEEcCcchhhhhcCCcccccchhHHHHHHHHHHHH
Q 007575 401 FVE------LY----------VGMGASR-VRDLFARAKKEA-PSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTE 462 (597)
Q Consensus 401 f~~------~~----------vG~~e~~-vr~lF~~A~~~a-P~ILfIDEIDaL~~~r~~~~~~~~~~e~eqtLnqLL~e 462 (597)
... .. .+..... ...+++...... |+||+|||+|.+....+. ..+..|+..
T Consensus 87 ~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l~~~~~~-----------~~l~~l~~~ 155 (386)
T 2qby_A 87 IDTPYRVLADLLESLDVKVPFTGLSIAELYRRLVKAVRDYGSQVVIVLDEIDAFVKKYND-----------DILYKLSRI 155 (386)
T ss_dssp HCSHHHHHHHHTTTTSCCCCSSSCCHHHHHHHHHHHHHTCCSCEEEEEETHHHHHHSSCS-----------THHHHHHHH
T ss_pred CCCHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcChhhhhccCcC-----------HHHHHHhhc
Confidence 321 11 1111222 344444444433 899999999999754321 245677777
Q ss_pred hcCCCCCCcEEEEEecCCC---CCCChhhhCCCCcc-eEEEecCCCHHHHHHHHHHHHhcC--CCCCCCCCCHHHHHHhC
Q 007575 463 MDGFDSNSAVIVLGATNRS---DVLDPALRRPGRFD-RVVMVETPDKIGREAILKVHVSKK--ELPLAKDIDLGDIASMT 536 (597)
Q Consensus 463 mdg~~~~~~VIVIaaTNrp---d~LD~aLlRpgRFd-~~I~v~~Pd~~eR~eILk~~l~~~--~~~l~~dvdl~~LA~~t 536 (597)
++.. ...++.+|++||.+ +.+++.+.+ ||. +.+.+++++.++..++++.++... ...+.++ .++.++..+
T Consensus 156 ~~~~-~~~~~~~I~~~~~~~~~~~~~~~~~~--r~~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~~~-~~~~l~~~~ 231 (386)
T 2qby_A 156 NSEV-NKSKISFIGITNDVKFVDLLDPRVKS--SLSEEEIIFPPYNAEELEDILTKRAQMAFKPGVLPDN-VIKLCAALA 231 (386)
T ss_dssp HHSC-CC--EEEEEEESCGGGGGGCTTHHHH--TTTTEEEEECCCCHHHHHHHHHHHHHHHBCSSCSCHH-HHHHHHHHH
T ss_pred hhhc-CCCeEEEEEEECCCChHhhhCHHHhc--cCCCeeEEeCCCCHHHHHHHHHHHHHhhccCCCCCHH-HHHHHHHHH
Confidence 7654 34578888899877 467888888 675 589999999999999999887632 1223332 356677766
Q ss_pred C---CCCHHHHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHhcccccccc-ccchhhhhhc
Q 007575 537 T---GFTGADLANLVNEAALLAGRLNKVVVEKIDFIHAVERSIAVSLSLSL-SLSLQASISL 594 (597)
Q Consensus 537 ~---G~SgaDL~~Lv~eAal~A~r~~~~~It~~d~~~Al~~v~~g~~k~s~-~ls~q~~l~l 594 (597)
. | +++.+.+++..|+..|...+...|+.+|+..|++........... .++.+...++
T Consensus 232 ~~~~G-~~r~~~~ll~~a~~~a~~~~~~~i~~~~v~~a~~~~~~~~~~~~~~~l~~~~~~il 292 (386)
T 2qby_A 232 AREHG-DARRALDLLRVSGEIAERMKDTKVKEEYVYMAKEEIERDRVRDIILTLPFHSKLVL 292 (386)
T ss_dssp HHTTC-CHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHHHHHHHHHHHHTSCHHHHHHH
T ss_pred HHhcC-CHHHHHHHHHHHHHHHHhcCCCccCHHHHHHHHHHHhhchHHHHHHcCCHHHHHHH
Confidence 5 5 677888999999999988888899999999999887654333221 3444444443
No 51
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=99.78 E-value=8.2e-19 Score=181.15 Aligned_cols=204 Identities=18% Similarity=0.210 Sum_probs=142.0
Q ss_pred cCCCCcccccccCChHHHHHHHHHHHHhcChhHHhhcCCCCCCceEEeCCCCChHHHHHHHHHHhcCCCeeeechhhhHH
Q 007575 324 EQGDTITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFVE 403 (597)
Q Consensus 324 ~~~~~vtf~dV~G~de~k~~L~eiv~~l~~p~~~~~lg~~~p~gVLL~GPPGTGKT~LArAIA~el~~pfi~is~sef~~ 403 (597)
+...+.+|++++|++++++.|.+.+. ....|..+|++||||||||++|+++|++++.+++.+++++..
T Consensus 18 ~k~rP~~~~~ivg~~~~~~~l~~~l~-----------~~~~~~~~L~~G~~G~GKT~la~~la~~l~~~~~~i~~~~~~- 85 (324)
T 3u61_B 18 QKYRPSTIDECILPAFDKETFKSITS-----------KGKIPHIILHSPSPGTGKTTVAKALCHDVNADMMFVNGSDCK- 85 (324)
T ss_dssp HHSCCCSTTTSCCCHHHHHHHHHHHH-----------TTCCCSEEEECSSTTSSHHHHHHHHHHHTTEEEEEEETTTCC-
T ss_pred HhhCCCCHHHHhCcHHHHHHHHHHHH-----------cCCCCeEEEeeCcCCCCHHHHHHHHHHHhCCCEEEEcccccC-
Confidence 34456789999999999998888876 234566789999999999999999999999999999987632
Q ss_pred HHhhcchHHHHHHHHHHHhc-----CCeEEEEcCcchhh-hhcCCcccccchhHHHHHHHHHHHHhcCCCCCCcEEEEEe
Q 007575 404 LYVGMGASRVRDLFARAKKE-----APSIIFIDEIDAVA-KSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGA 477 (597)
Q Consensus 404 ~~vG~~e~~vr~lF~~A~~~-----aP~ILfIDEIDaL~-~~r~~~~~~~~~~e~eqtLnqLL~emdg~~~~~~VIVIaa 477 (597)
...+++.+..+... .++||||||+|.+. .. ..+.|+..|+.. ...+.+|++
T Consensus 86 ------~~~i~~~~~~~~~~~~~~~~~~vliiDEi~~l~~~~---------------~~~~L~~~le~~--~~~~~iI~~ 142 (324)
T 3u61_B 86 ------IDFVRGPLTNFASAASFDGRQKVIVIDEFDRSGLAE---------------SQRHLRSFMEAY--SSNCSIIIT 142 (324)
T ss_dssp ------HHHHHTHHHHHHHBCCCSSCEEEEEEESCCCGGGHH---------------HHHHHHHHHHHH--GGGCEEEEE
T ss_pred ------HHHHHHHHHHHHhhcccCCCCeEEEEECCcccCcHH---------------HHHHHHHHHHhC--CCCcEEEEE
Confidence 34555555544332 56899999999986 22 224555555532 245788889
Q ss_pred cCCCCCCChhhhCCCCcceEEEecCCCHHHHHHHHHHH-------HhcCCCCCCC-CCCHHHHHHhCCCCCHHHHHHHHH
Q 007575 478 TNRSDVLDPALRRPGRFDRVVMVETPDKIGREAILKVH-------VSKKELPLAK-DIDLGDIASMTTGFTGADLANLVN 549 (597)
Q Consensus 478 TNrpd~LD~aLlRpgRFd~~I~v~~Pd~~eR~eILk~~-------l~~~~~~l~~-dvdl~~LA~~t~G~SgaDL~~Lv~ 549 (597)
||.++.+++++++ ||. .+.+++|+.+++.+|++.+ +...++.+.+ + .++.++..+.| ..+++.+.++
T Consensus 143 ~n~~~~l~~~l~s--R~~-~i~~~~~~~~e~~~il~~~~~~l~~~~~~~~~~~~~~~-~~~~l~~~~~g-d~R~a~~~L~ 217 (324)
T 3u61_B 143 ANNIDGIIKPLQS--RCR-VITFGQPTDEDKIEMMKQMIRRLTEICKHEGIAIADMK-VVAALVKKNFP-DFRKTIGELD 217 (324)
T ss_dssp ESSGGGSCTTHHH--HSE-EEECCCCCHHHHHHHHHHHHHHHHHHHHHHTCCBSCHH-HHHHHHHHTCS-CTTHHHHHHH
T ss_pred eCCccccCHHHHh--hCc-EEEeCCCCHHHHHHHHHHHHHHHHHHHHHcCCCCCcHH-HHHHHHHhCCC-CHHHHHHHHH
Confidence 9999999999999 885 7999999999876665443 3344556555 4 47888888765 4455566665
Q ss_pred HHHHHHHhcCCCcccHHHHHHHHH
Q 007575 550 EAALLAGRLNKVVVEKIDFIHAVE 573 (597)
Q Consensus 550 eAal~A~r~~~~~It~~d~~~Al~ 573 (597)
.++ ....|+.+++.+++.
T Consensus 218 ~~~------~~~~i~~~~v~~~~~ 235 (324)
T 3u61_B 218 SYS------SKGVLDAGILSLVTN 235 (324)
T ss_dssp HHG------GGTCBCC--------
T ss_pred HHh------ccCCCCHHHHHHHhC
Confidence 554 223477776665543
No 52
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.78 E-value=1.3e-18 Score=192.42 Aligned_cols=224 Identities=17% Similarity=0.222 Sum_probs=147.9
Q ss_pred CCCCcccccccCChHHHHHHHHHHHHhcC--hhHHhhcCC---CCCCceEEeCCCCChHHHHHHHHHHhcCCCeeeechh
Q 007575 325 QGDTITFADVAGVDEAKEELEEIVEFLRS--PDKYIRLGA---RPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSAS 399 (597)
Q Consensus 325 ~~~~vtf~dV~G~de~k~~L~eiv~~l~~--p~~~~~lg~---~~p~gVLL~GPPGTGKT~LArAIA~el~~pfi~is~s 399 (597)
...+.+|++++|.+++++.|.+.+..... +..|...|. .+++++||+||||||||++|+++|++++.+++.++++
T Consensus 32 kyrP~~~~dliG~~~~~~~L~~~l~~~~~~~~~~~~~~g~~~~~~~~~lLL~GppGtGKTtla~~la~~l~~~~i~in~s 111 (516)
T 1sxj_A 32 KYAPTNLQQVCGNKGSVMKLKNWLANWENSKKNSFKHAGKDGSGVFRAAMLYGPPGIGKTTAAHLVAQELGYDILEQNAS 111 (516)
T ss_dssp HTCCSSGGGCCSCHHHHHHHHHHHHTHHHHHHTTTCCCCTTSTTSCSEEEEECSTTSSHHHHHHHHHHHTTCEEEEECTT
T ss_pred ccCCCCHHHhcCCHHHHHHHHHHHHHhHhhchhhccccCccCCCCCcEEEEECCCCCCHHHHHHHHHHHcCCCEEEEeCC
Confidence 34567899999999999999888764221 112222222 3568999999999999999999999999999999998
Q ss_pred hhHHHHhhcch-------HHHHHHHHHH-----HhcCCeEEEEcCcchhhhhcCCcccccchhHHHHHHHHHHHHhcCCC
Q 007575 400 EFVELYVGMGA-------SRVRDLFARA-----KKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFD 467 (597)
Q Consensus 400 ef~~~~vG~~e-------~~vr~lF~~A-----~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~eqtLnqLL~emdg~~ 467 (597)
++......... ..+..+|..+ ....++||||||+|.+...... .++.|+..++.
T Consensus 112 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~vliIDEid~l~~~~~~------------~l~~L~~~l~~-- 177 (516)
T 1sxj_A 112 DVRSKTLLNAGVKNALDNMSVVGYFKHNEEAQNLNGKHFVIIMDEVDGMSGGDRG------------GVGQLAQFCRK-- 177 (516)
T ss_dssp SCCCHHHHHHTGGGGTTBCCSTTTTTC----CCSSTTSEEEEECSGGGCCTTSTT------------HHHHHHHHHHH--
T ss_pred CcchHHHHHHHHHHHhccccHHHHHhhhhhhhhccCCCeEEEEECCCccchhhHH------------HHHHHHHHHHh--
Confidence 76443221110 1123344433 2356889999999999754221 23445555542
Q ss_pred CCCcEEEEEecCCCCCCChhhhCCCCcceEEEecCCCHHHHHHHHHHHHhcCCCCCCCCCCHHHHHHhCCCCCHHHHHHH
Q 007575 468 SNSAVIVLGATNRSDVLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTTGFTGADLANL 547 (597)
Q Consensus 468 ~~~~VIVIaaTNrpd~LD~aLlRpgRFd~~I~v~~Pd~~eR~eILk~~l~~~~~~l~~dvdl~~LA~~t~G~SgaDL~~L 547 (597)
....+|+|+++.....+. .+. |+...+.|++|+.+++.+++...+...++.+.+++ ++.|+..+.| ..+.+.++
T Consensus 178 ~~~~iIli~~~~~~~~l~-~l~---~r~~~i~f~~~~~~~~~~~L~~i~~~~~~~i~~~~-l~~la~~s~G-diR~~i~~ 251 (516)
T 1sxj_A 178 TSTPLILICNERNLPKMR-PFD---RVCLDIQFRRPDANSIKSRLMTIAIREKFKLDPNV-IDRLIQTTRG-DIRQVINL 251 (516)
T ss_dssp CSSCEEEEESCTTSSTTG-GGT---TTSEEEECCCCCHHHHHHHHHHHHHHHTCCCCTTH-HHHHHHHTTT-CHHHHHHH
T ss_pred cCCCEEEEEcCCCCccch-hhH---hceEEEEeCCCCHHHHHHHHHHHHHHcCCCCCHHH-HHHHHHHcCC-cHHHHHHH
Confidence 233455555544434443 343 45568999999999999999988877777777664 8899988865 44555555
Q ss_pred HHHHHHHHHhcCCCcccHHHHHHHHH
Q 007575 548 VNEAALLAGRLNKVVVEKIDFIHAVE 573 (597)
Q Consensus 548 v~eAal~A~r~~~~~It~~d~~~Al~ 573 (597)
++.++ . +...|+.+++.+++.
T Consensus 252 L~~~~---~--~~~~It~~~v~~~~~ 272 (516)
T 1sxj_A 252 LSTIS---T--TTKTINHENINEISK 272 (516)
T ss_dssp HTHHH---H--HSSCCCTTHHHHHHH
T ss_pred HHHHH---h--cCCCCchHHHHHHHH
Confidence 54433 2 234567666655544
No 53
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=99.77 E-value=2e-17 Score=172.95 Aligned_cols=215 Identities=22% Similarity=0.283 Sum_probs=161.0
Q ss_pred CcccccccCChHHHHHHHHHHHHhcChhHHhhcCCCCCCceEEeCCCCChHHHHHHHHHHhcCCCeeeechhhhHHHHhh
Q 007575 328 TITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFVELYVG 407 (597)
Q Consensus 328 ~vtf~dV~G~de~k~~L~eiv~~l~~p~~~~~lg~~~p~gVLL~GPPGTGKT~LArAIA~el~~pfi~is~sef~~~~vG 407 (597)
.-+|++++|.+.+++.|...+..-+.+ ..++..++|+||||||||+||+++|+++++++...+++.+..
T Consensus 21 ~~~l~~~~g~~~~~~~l~~~i~~~~~~-------~~~~~~~ll~Gp~G~GKTTLa~~ia~~l~~~~~~~sg~~~~~---- 89 (334)
T 1in4_A 21 PKSLDEFIGQENVKKKLSLALEAAKMR-------GEVLDHVLLAGPPGLGKTTLAHIIASELQTNIHVTSGPVLVK---- 89 (334)
T ss_dssp CSSGGGCCSCHHHHHHHHHHHHHHHHH-------TCCCCCEEEESSTTSSHHHHHHHHHHHHTCCEEEEETTTCCS----
T ss_pred CccHHHccCcHHHHHHHHHHHHHHHhc-------CCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEechHhcC----
Confidence 347899999999888888777643211 234567999999999999999999999999988777654321
Q ss_pred cchHHHHHHHHHHHhcCCeEEEEcCcchhhhhcCCcccccchhHHHHHHHHHHHHhcCCC-------C---------CCc
Q 007575 408 MGASRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFD-------S---------NSA 471 (597)
Q Consensus 408 ~~e~~vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~eqtLnqLL~emdg~~-------~---------~~~ 471 (597)
...+..++.. ...++|+||||+|.+.... .+.|+..|+.+. . ...
T Consensus 90 --~~~l~~~~~~--~~~~~v~~iDE~~~l~~~~---------------~e~L~~~~~~~~~~i~~~~~~~~~~i~~~l~~ 150 (334)
T 1in4_A 90 --QGDMAAILTS--LERGDVLFIDEIHRLNKAV---------------EELLYSAIEDFQIDIMIGKGPSAKSIRIDIQP 150 (334)
T ss_dssp --HHHHHHHHHH--CCTTCEEEEETGGGCCHHH---------------HHHHHHHHHTSCCCC---------------CC
T ss_pred --HHHHHHHHHH--ccCCCEEEEcchhhcCHHH---------------HHHHHHHHHhcccceeeccCcccccccccCCC
Confidence 1223333322 2346799999999886421 122333333221 0 124
Q ss_pred EEEEEecCCCCCCChhhhCCCCcceEEEecCCCHHHHHHHHHHHHhcCCCCCCCCCCHHHHHHhCCCCCHHHHHHHHHHH
Q 007575 472 VIVLGATNRSDVLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTTGFTGADLANLVNEA 551 (597)
Q Consensus 472 VIVIaaTNrpd~LD~aLlRpgRFd~~I~v~~Pd~~eR~eILk~~l~~~~~~l~~dvdl~~LA~~t~G~SgaDL~~Lv~eA 551 (597)
+.++++|+++..|++.+++ ||...+.+++|+.+++.+|++......+..+.++ .+..|+.++.| +++++.++++.+
T Consensus 151 ~~li~at~~~~~Ls~~l~s--R~~l~~~Ld~~~~~~l~~iL~~~~~~~~~~~~~~-~~~~ia~~~~G-~~R~a~~ll~~~ 226 (334)
T 1in4_A 151 FTLVGATTRSGLLSSPLRS--RFGIILELDFYTVKELKEIIKRAASLMDVEIEDA-AAEMIAKRSRG-TPRIAIRLTKRV 226 (334)
T ss_dssp CEEEEEESCGGGSCHHHHT--TCSEEEECCCCCHHHHHHHHHHHHHHTTCCBCHH-HHHHHHHTSTT-CHHHHHHHHHHH
T ss_pred eEEEEecCCcccCCHHHHH--hcCceeeCCCCCHHHHHHHHHHHHHHcCCCcCHH-HHHHHHHhcCC-ChHHHHHHHHHH
Confidence 6778899999999999999 9998899999999999999999887666655544 37888988886 678999999999
Q ss_pred HHHHHhcCCCcccHHHHHHHHHHHh
Q 007575 552 ALLAGRLNKVVVEKIDFIHAVERSI 576 (597)
Q Consensus 552 al~A~r~~~~~It~~d~~~Al~~v~ 576 (597)
...|...+...|+.+++++|++...
T Consensus 227 ~~~a~~~~~~~It~~~v~~al~~~~ 251 (334)
T 1in4_A 227 RDMLTVVKADRINTDIVLKTMEVLN 251 (334)
T ss_dssp HHHHHHHTCSSBCHHHHHHHHHHHT
T ss_pred HHHHHHcCCCCcCHHHHHHHHHHhC
Confidence 8888888888899999999998863
No 54
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=99.76 E-value=2.6e-18 Score=181.70 Aligned_cols=237 Identities=22% Similarity=0.273 Sum_probs=149.2
Q ss_pred cccCChHHHHHHHHHHHH-hcChhHH-----------------hhcCCCCCCceEEeCCCCChHHHHHHHHHHhcCCCee
Q 007575 333 DVAGVDEAKEELEEIVEF-LRSPDKY-----------------IRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFI 394 (597)
Q Consensus 333 dV~G~de~k~~L~eiv~~-l~~p~~~-----------------~~lg~~~p~gVLL~GPPGTGKT~LArAIA~el~~pfi 394 (597)
+|+|++++|+.|...+.. ++..... .......+.++||+||||||||++|+++|.+++.||+
T Consensus 22 ~viGq~~ak~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~p~~~~~~~~~~~~~ill~Gp~GtGKT~la~~la~~l~~~~~ 101 (376)
T 1um8_A 22 YVIGQEQAKKVFSVAVYNHYKRLSFKEKLKKQDNQDSNVELEHLEEVELSKSNILLIGPTGSGKTLMAQTLAKHLDIPIA 101 (376)
T ss_dssp TCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHTTCCCCCEEEECCTTSSHHHHHHHHHHHTTCCEE
T ss_pred HccCcHHHHHHHHHHHHHHHHHHHhhhhhhhccccccccccccccccccCCCCEEEECCCCCCHHHHHHHHHHHhCCCEE
Confidence 589999999999988732 1111100 0112346778999999999999999999999999999
Q ss_pred eechhhhH-HHHhhcc-hHHHHHHHHHHH----hcCCeEEEEcCcchhhhhcCCcccccchhHHHHHHHHHHHHhcCCC-
Q 007575 395 SCSASEFV-ELYVGMG-ASRVRDLFARAK----KEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFD- 467 (597)
Q Consensus 395 ~is~sef~-~~~vG~~-e~~vr~lF~~A~----~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~eqtLnqLL~emdg~~- 467 (597)
.++|..+. ..+.|.. ...+..++..+. ...++||||||+|.+...+.... ...+...+.+.+.|+..|++..
T Consensus 102 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEi~~l~~~~~~~~-~~~~~~~~~~~~~Ll~~le~~~~ 180 (376)
T 1um8_A 102 ISDATSLTEAGYVGEDVENILTRLLQASDWNVQKAQKGIVFIDEIDKISRLSENRS-ITRDVSGEGVQQALLKIVEGSLV 180 (376)
T ss_dssp EEEGGGCC--------CTHHHHHHHHHTTTCHHHHTTSEEEEETGGGC---------------CHHHHHHHHHHHHCCEE
T ss_pred EecchhhhhcCcCCccHHHHHHHHHhhccchhhhcCCeEEEEcCHHHHhhhcCCCc-eecccchHHHHHHHHHHhhccce
Confidence 99998875 3355543 344556655432 23578999999999987643211 1111122346788888888541
Q ss_pred ------------------CCCcEEEEEecCCC-----------------------------------------CCCChhh
Q 007575 468 ------------------SNSAVIVLGATNRS-----------------------------------------DVLDPAL 488 (597)
Q Consensus 468 ------------------~~~~VIVIaaTNrp-----------------------------------------d~LD~aL 488 (597)
...++++|+++|.. ..+.++|
T Consensus 181 ~~~~~~~~~~~~~~~~~i~t~n~~~I~~~~~~~l~~~l~~R~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~~~p~l 260 (376)
T 1um8_A 181 NIPPKGGRKHPEGNFIQIDTSDILFICAGAFDGLAEIIKKRTTQNVLGFTQEKMSKKEQEAILHLVQTHDLVTYGLIPEL 260 (376)
T ss_dssp C---------------CEECTTCEEEEEECCTTHHHHTTTSCSSCCCSCCCSSCCTTTTTTSGGGCCHHHHHHTTCCHHH
T ss_pred ecccccccccCCcceEEEecCCeEEEecCCHHHHHHHHHHHhcccccCCCchhhhccchhHHHhhcCHHHHhhcCCChHH
Confidence 12456778877621 1256777
Q ss_pred hCCCCcceEEEecCCCHHHHHHHHHH----HHh-------cC--CCCCCCCCCHHHHHHhCC--CCCHHHHHHHHHHHHH
Q 007575 489 RRPGRFDRVVMVETPDKIGREAILKV----HVS-------KK--ELPLAKDIDLGDIASMTT--GFTGADLANLVNEAAL 553 (597)
Q Consensus 489 lRpgRFd~~I~v~~Pd~~eR~eILk~----~l~-------~~--~~~l~~dvdl~~LA~~t~--G~SgaDL~~Lv~eAal 553 (597)
.+ ||+..+.+++++.++..+|+.. ++. .. .+.+.++ .++.|+.... ....++|.++++.+..
T Consensus 261 ~~--R~~~~i~~~~l~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~-a~~~l~~~~~~~~~~~R~L~~~le~~~~ 337 (376)
T 1um8_A 261 IG--RLPVLSTLDSISLEAMVDILQKPKNALIKQYQQLFKMDEVDLIFEEE-AIKEIAQLALERKTGARGLRAIIEDFCL 337 (376)
T ss_dssp HT--TCCEEEECCCCCHHHHHHHHHSSTTCHHHHHHHHHHTTTCEEEECHH-HHHHHHHHHHHTTCTGGGHHHHHHHHHH
T ss_pred hc--CCCceeeccCCCHHHHHHHHhhhHHHHHHHHHHHHhhcCceEEECHH-HHHHHHHHhcccccCcHHHHHHHHHHHH
Confidence 77 9999999999999999998862 111 11 1223333 3677776643 3567899999998877
Q ss_pred HHHhcC------CCcccHHHHHHHHH
Q 007575 554 LAGRLN------KVVVEKIDFIHAVE 573 (597)
Q Consensus 554 ~A~r~~------~~~It~~d~~~Al~ 573 (597)
.+..+. ...|+.++++++.+
T Consensus 338 ~~~~~~~~~~~~~~~i~~~~v~~~~~ 363 (376)
T 1um8_A 338 DIMFDLPKLKGSEVRITKDCVLKQAE 363 (376)
T ss_dssp HHHHTGGGGTTSEEEECHHHHTTSSC
T ss_pred HHHhhccCCCCCEEEEeHHHhcCCCC
Confidence 654431 23588888876543
No 55
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.76 E-value=9.8e-18 Score=173.73 Aligned_cols=210 Identities=20% Similarity=0.169 Sum_probs=151.7
Q ss_pred cCCCCcccccccCChHHHHHHHHHHHHhcChhHHhhcCCCCCCceEEeCCCCChHHHHHHHHHHhcC------CCeeeec
Q 007575 324 EQGDTITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAE------VPFISCS 397 (597)
Q Consensus 324 ~~~~~vtf~dV~G~de~k~~L~eiv~~l~~p~~~~~lg~~~p~gVLL~GPPGTGKT~LArAIA~el~------~pfi~is 397 (597)
+...+.+|++++|.+++++.|...+. . .. +.++||+||||||||++|++++++++ ..++.++
T Consensus 29 ~k~~p~~~~~i~g~~~~~~~l~~~l~---~--------~~-~~~~ll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~ 96 (353)
T 1sxj_D 29 EKYRPKNLDEVTAQDHAVTVLKKTLK---S--------AN-LPHMLFYGPPGTGKTSTILALTKELYGPDLMKSRILELN 96 (353)
T ss_dssp HHTCCSSTTTCCSCCTTHHHHHHHTT---C--------TT-CCCEEEECSTTSSHHHHHHHHHHHHHHHHHHTTSEEEEC
T ss_pred HhcCCCCHHHhhCCHHHHHHHHHHHh---c--------CC-CCEEEEECCCCCCHHHHHHHHHHHhCCCcccccceEEEc
Confidence 34456789999999999887776653 1 11 23499999999999999999999854 4677777
Q ss_pred hhhhHHHHhhcchHHHHHHHHHHH----------------hcCCeEEEEcCcchhhhhcCCcccccchhHHHHHHHHHHH
Q 007575 398 ASEFVELYVGMGASRVRDLFARAK----------------KEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLT 461 (597)
Q Consensus 398 ~sef~~~~vG~~e~~vr~lF~~A~----------------~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~eqtLnqLL~ 461 (597)
+++.. +...+++.+.... ...+.||||||+|.+... ..+.|+.
T Consensus 97 ~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vliiDE~~~l~~~---------------~~~~Ll~ 155 (353)
T 1sxj_D 97 ASDER------GISIVREKVKNFARLTVSKPSKHDLENYPCPPYKIIILDEADSMTAD---------------AQSALRR 155 (353)
T ss_dssp SSSCC------CHHHHTTHHHHHHHSCCCCCCTTHHHHSCCCSCEEEEETTGGGSCHH---------------HHHHHHH
T ss_pred ccccc------chHHHHHHHHHHhhhcccccchhhcccCCCCCceEEEEECCCccCHH---------------HHHHHHH
Confidence 76531 1122222222211 124569999999998532 2355666
Q ss_pred HhcCCCCCCcEEEEEecCCCCCCChhhhCCCCcceEEEecCCCHHHHHHHHHHHHhcCCCCCCCCCCHHHHHHhCCCCCH
Q 007575 462 EMDGFDSNSAVIVLGATNRSDVLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTTGFTG 541 (597)
Q Consensus 462 emdg~~~~~~VIVIaaTNrpd~LD~aLlRpgRFd~~I~v~~Pd~~eR~eILk~~l~~~~~~l~~dvdl~~LA~~t~G~Sg 541 (597)
.|+... ....+|.+||.++.+++++.+ |+. .+.+++|+.++..++++..+...++.+.++ .++.|+..+.| ..
T Consensus 156 ~le~~~--~~~~~il~~~~~~~l~~~l~s--R~~-~i~~~~~~~~~~~~~l~~~~~~~~~~i~~~-~l~~l~~~~~G-~~ 228 (353)
T 1sxj_D 156 TMETYS--GVTRFCLICNYVTRIIDPLAS--QCS-KFRFKALDASNAIDRLRFISEQENVKCDDG-VLERILDISAG-DL 228 (353)
T ss_dssp HHHHTT--TTEEEEEEESCGGGSCHHHHH--HSE-EEECCCCCHHHHHHHHHHHHHTTTCCCCHH-HHHHHHHHTSS-CH
T ss_pred HHHhcC--CCceEEEEeCchhhCcchhhc--cCc-eEEeCCCCHHHHHHHHHHHHHHhCCCCCHH-HHHHHHHHcCC-CH
Confidence 666433 345666788999999999998 886 889999999999999999887766666655 48889998886 57
Q ss_pred HHHHHHHHHHHHHHHhcCCC-cccHHHHHHHHH
Q 007575 542 ADLANLVNEAALLAGRLNKV-VVEKIDFIHAVE 573 (597)
Q Consensus 542 aDL~~Lv~eAal~A~r~~~~-~It~~d~~~Al~ 573 (597)
+.+.++++.++..+.+.+.. .|+.+|+.+++.
T Consensus 229 r~~~~~l~~~~~~~~~~~~~~~It~~~v~~~~~ 261 (353)
T 1sxj_D 229 RRGITLLQSASKGAQYLGDGKNITSTQVEELAG 261 (353)
T ss_dssp HHHHHHHHHTHHHHHHHCSCCCCCHHHHHHHHT
T ss_pred HHHHHHHHHHHHhcCCCccCccccHHHHHHHhC
Confidence 78888888888776554433 799998877654
No 56
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=99.75 E-value=6.8e-18 Score=194.32 Aligned_cols=224 Identities=21% Similarity=0.272 Sum_probs=164.1
Q ss_pred CcccccccCChHHHHHHHHHHHHhcChhHHhhcCCCCCCceEEeCCCCChHHHHHHHHHHhc----------CCCeeeec
Q 007575 328 TITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEA----------EVPFISCS 397 (597)
Q Consensus 328 ~vtf~dV~G~de~k~~L~eiv~~l~~p~~~~~lg~~~p~gVLL~GPPGTGKT~LArAIA~el----------~~pfi~is 397 (597)
.-+|++++|.++..+.+.+++. ...+.++||+||||||||++|+++|.++ +..++.++
T Consensus 182 ~~~~d~~iGr~~~i~~l~~~l~------------~~~~~~vlL~G~~GtGKT~la~~la~~l~~~~v~~~~~~~~~~~~~ 249 (758)
T 1r6b_X 182 VGGIDPLIGREKELERAIQVLC------------RRRKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSLD 249 (758)
T ss_dssp TTCSCCCCSCHHHHHHHHHHHT------------SSSSCEEEEECCTTSSHHHHHHHHHHHHHHTCSCGGGTTCEEEECC
T ss_pred cCCCCCccCCHHHHHHHHHHHh------------ccCCCCeEEEcCCCCCHHHHHHHHHHHHHhCCCChhhcCCEEEEEc
Confidence 4578999999988777666543 2346689999999999999999999976 56677787
Q ss_pred hhhhH--HHHhhcchHHHHHHHHHHHhcCCeEEEEcCcchhhhhcCCcccccchhHHHHHHHHHHHHhcCCCCCCcEEEE
Q 007575 398 ASEFV--ELYVGMGASRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVL 475 (597)
Q Consensus 398 ~sef~--~~~vG~~e~~vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~eqtLnqLL~emdg~~~~~~VIVI 475 (597)
+..+. ..+.|..+..++.+|..+....++||||||+|.+.+..+.. .+ .....+.|.. +-....+.+|
T Consensus 250 ~~~l~~~~~~~g~~e~~l~~~~~~~~~~~~~iL~IDEi~~l~~~~~~~---~~---~~~~~~~L~~----~l~~~~~~~I 319 (758)
T 1r6b_X 250 IGSLLAGTKYRGDFEKRFKALLKQLEQDTNSILFIDEIHTIIGAGAAS---GG---QVDAANLIKP----LLSSGKIRVI 319 (758)
T ss_dssp CC---CCCCCSSCHHHHHHHHHHHHSSSSCEEEEETTTTTTTTSCCSS---SC---HHHHHHHHSS----CSSSCCCEEE
T ss_pred HHHHhccccccchHHHHHHHHHHHHHhcCCeEEEEechHHHhhcCCCC---cc---hHHHHHHHHH----HHhCCCeEEE
Confidence 77765 35678888999999999988889999999999997654321 01 1122233332 2335678899
Q ss_pred EecCCCC-----CCChhhhCCCCcceEEEecCCCHHHHHHHHHHHHhc----CCCCCCCCCCHHHHHHhCC-----CCCH
Q 007575 476 GATNRSD-----VLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSK----KELPLAKDIDLGDIASMTT-----GFTG 541 (597)
Q Consensus 476 aaTNrpd-----~LD~aLlRpgRFd~~I~v~~Pd~~eR~eILk~~l~~----~~~~l~~dvdl~~LA~~t~-----G~Sg 541 (597)
++||.++ .+|++|.+ ||+ .+.++.|+.+++.+|++.+... .++.+.++ .+..++..+. .+.+
T Consensus 320 ~at~~~~~~~~~~~d~aL~~--Rf~-~i~v~~p~~~e~~~il~~l~~~~~~~~~v~~~~~-al~~~~~~s~~~i~~~~lp 395 (758)
T 1r6b_X 320 GSTTYQEFSNIFEKDRALAR--RFQ-KIDITEPSIEETVQIINGLKPKYEAHHDVRYTAK-AVRAAVELAVKYINDRHLP 395 (758)
T ss_dssp EEECHHHHHCCCCCTTSSGG--GEE-EEECCCCCHHHHHHHHHHHHHHHHHHHTCCCCHH-HHHHHHHHHHHHCTTSCTT
T ss_pred EEeCchHHhhhhhcCHHHHh--Cce-EEEcCCCCHHHHHHHHHHHHHHHHHhcCCCCCHH-HHHHHHHHhhhhcccccCc
Confidence 9998753 57899999 998 7999999999999999987754 23444433 3555665443 3566
Q ss_pred HHHHHHHHHHHHHHHh----cCCCcccHHHHHHHHHHHhc
Q 007575 542 ADLANLVNEAALLAGR----LNKVVVEKIDFIHAVERSIA 577 (597)
Q Consensus 542 aDL~~Lv~eAal~A~r----~~~~~It~~d~~~Al~~v~~ 577 (597)
..+..++++|+..+.. .....|+.+|+.+++.+...
T Consensus 396 ~~~i~lld~a~~~~~~~~~~~~~~~v~~~di~~~~~~~~~ 435 (758)
T 1r6b_X 396 DKAIDVIDEAGARARLMPVSKRKKTVNVADIESVVARIAR 435 (758)
T ss_dssp HHHHHHHHHHHHHHHHSSSCCCCCSCCHHHHHHHHHHHSC
T ss_pred hHHHHHHHHHHHHHhcccccccCCccCHHHHHHHHHHhcC
Confidence 7899999998876654 24567999999999988653
No 57
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=99.74 E-value=4.5e-18 Score=158.64 Aligned_cols=159 Identities=25% Similarity=0.375 Sum_probs=115.6
Q ss_pred CcccccccCChHHHHHHHHHHHHhcChhHHhhcCCCCCCceEEeCCCCChHHHHHHHHHHhc----------CCCeeeec
Q 007575 328 TITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEA----------EVPFISCS 397 (597)
Q Consensus 328 ~vtf~dV~G~de~k~~L~eiv~~l~~p~~~~~lg~~~p~gVLL~GPPGTGKT~LArAIA~el----------~~pfi~is 397 (597)
..+|++++|.++..+.+.+.+. . ..+.++||+||||||||++|++++.++ +.+++.++
T Consensus 18 ~~~~~~~~g~~~~~~~l~~~l~---~---------~~~~~~ll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (195)
T 1jbk_A 18 QGKLDPVIGRDEEIRRTIQVLQ---R---------RTKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLALD 85 (195)
T ss_dssp TTCSCCCCSCHHHHHHHHHHHT---S---------SSSCEEEEECCTTSCHHHHHHHHHHHHHHTCSCGGGTTCEEEEEC
T ss_pred hccccccccchHHHHHHHHHHh---c---------CCCCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCcEEEee
Confidence 4568899999987666665542 2 335689999999999999999999986 78899999
Q ss_pred hhhhH--HHHhhcchHHHHHHHHHHH-hcCCeEEEEcCcchhhhhcCCcccccchhHHHHHHHHHHHHhcCCCCCCcEEE
Q 007575 398 ASEFV--ELYVGMGASRVRDLFARAK-KEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIV 474 (597)
Q Consensus 398 ~sef~--~~~vG~~e~~vr~lF~~A~-~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~eqtLnqLL~emdg~~~~~~VIV 474 (597)
+.++. ..+.+.....++.++..+. ...++||+|||+|.+...+... .... ..+.+...++ ..++.+
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~iDe~~~l~~~~~~~----~~~~---~~~~l~~~~~----~~~~~~ 154 (195)
T 1jbk_A 86 MGALVAGAKYRGEFEERLKGVLNDLAKQEGNVILFIDELHTMVGAGKAD----GAMD---AGNMLKPALA----RGELHC 154 (195)
T ss_dssp HHHHHTTTCSHHHHHHHHHHHHHHHHHSTTTEEEEEETGGGGTT----------CCC---CHHHHHHHHH----TTSCCE
T ss_pred HHHHhccCCccccHHHHHHHHHHHHhhcCCCeEEEEeCHHHHhccCccc----chHH---HHHHHHHhhc----cCCeEE
Confidence 88776 3345556667788887664 4568899999999997554211 0111 1222333333 245778
Q ss_pred EEecCCCC-----CCChhhhCCCCcceEEEecCCCHHHHHHHH
Q 007575 475 LGATNRSD-----VLDPALRRPGRFDRVVMVETPDKIGREAIL 512 (597)
Q Consensus 475 IaaTNrpd-----~LD~aLlRpgRFd~~I~v~~Pd~~eR~eIL 512 (597)
|++||.++ .+++++.+ ||+ .+.+++|+.+++.+|+
T Consensus 155 i~~~~~~~~~~~~~~~~~l~~--r~~-~i~~~~p~~~~~~~il 194 (195)
T 1jbk_A 155 VGATTLDEYRQYIEKDAALER--RFQ-KVFVAEPSVEDTIAIL 194 (195)
T ss_dssp EEEECHHHHHHHTTTCHHHHT--TEE-EEECCCCCHHHHHTTC
T ss_pred EEeCCHHHHHHHHhcCHHHHH--Hhc-eeecCCCCHHHHHHHh
Confidence 88888876 78999999 998 6999999999998876
No 58
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=99.73 E-value=1.8e-17 Score=168.74 Aligned_cols=202 Identities=24% Similarity=0.264 Sum_probs=144.6
Q ss_pred CCCCcccccccCChHHHHHHHHHHHHhcChhHHhhcCCCCCCceEEeCCCCChHHHHHHHHHHhc-----CCCeeeechh
Q 007575 325 QGDTITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEA-----EVPFISCSAS 399 (597)
Q Consensus 325 ~~~~vtf~dV~G~de~k~~L~eiv~~l~~p~~~~~lg~~~p~gVLL~GPPGTGKT~LArAIA~el-----~~pfi~is~s 399 (597)
...+.+|++++|++++++.|.+.+.. ...| ++||+||||||||++|+++++++ +.+++.++++
T Consensus 10 k~~p~~~~~~~g~~~~~~~l~~~l~~-----------~~~~-~~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~ 77 (319)
T 2chq_A 10 KYRPRTLDEVVGQDEVIQRLKGYVER-----------KNIP-HLLFSGPPGTGKTATAIALARDLFGENWRDNFIEMNAS 77 (319)
T ss_dssp TTSCSSGGGSCSCHHHHHHHHTTTTT-----------TCCC-CEEEESSSSSSHHHHHHHHHHHHHTTCHHHHCEEEETT
T ss_pred hcCCCCHHHHhCCHHHHHHHHHHHhC-----------CCCC-eEEEECcCCcCHHHHHHHHHHHhcCCcccCCeEEEeCc
Confidence 34567899999999998877766531 1223 49999999999999999999986 4567888877
Q ss_pred hhHHHHhhcchHHHHHHHHHHH------hcCCeEEEEcCcchhhhhcCCcccccchhHHHHHHHHHHHHhcCCCCCCcEE
Q 007575 400 EFVELYVGMGASRVRDLFARAK------KEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVI 473 (597)
Q Consensus 400 ef~~~~vG~~e~~vr~lF~~A~------~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~eqtLnqLL~emdg~~~~~~VI 473 (597)
+... ...+++.+.... ...++||+|||+|.+... ..+.|+..++.. ...++
T Consensus 78 ~~~~------~~~~~~~~~~~~~~~~~~~~~~~vliiDe~~~l~~~---------------~~~~L~~~le~~--~~~~~ 134 (319)
T 2chq_A 78 DERG------IDVVRHKIKEFARTAPIGGAPFKIIFLDEADALTAD---------------AQAALRRTMEMY--SKSCR 134 (319)
T ss_dssp STTC------TTTSSHHHHHHHHSCCSSSCCCEEEEEETGGGSCHH---------------HHHTTGGGTSSS--SSSEE
T ss_pred cccC------hHHHHHHHHHHHhcCCCCCCCceEEEEeCCCcCCHH---------------HHHHHHHHHHhc--CCCCe
Confidence 5421 122233333322 144789999999998532 335667777643 35678
Q ss_pred EEEecCCCCCCChhhhCCCCcceEEEecCCCHHHHHHHHHHHHhcCCCCCCCCCCHHHHHHhCCCCCHHHHHHHHHHHHH
Q 007575 474 VLGATNRSDVLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTTGFTGADLANLVNEAAL 553 (597)
Q Consensus 474 VIaaTNrpd~LD~aLlRpgRFd~~I~v~~Pd~~eR~eILk~~l~~~~~~l~~dvdl~~LA~~t~G~SgaDL~~Lv~eAal 553 (597)
+|++||.++.+++++.+ |+. .+.+++|+.+++.+++..++.+.+..+.++ .++.|+..+.| +.+.+.++++.++.
T Consensus 135 ~i~~~~~~~~l~~~l~s--r~~-~i~~~~~~~~~~~~~l~~~~~~~~~~i~~~-~l~~l~~~~~G-~~r~~~~~l~~~~~ 209 (319)
T 2chq_A 135 FILSCNYVSRIIEPIQS--RCA-VFRFKPVPKEAMKKRLLEICEKEGVKITED-GLEALIYISGG-DFRKAINALQGAAA 209 (319)
T ss_dssp EEEEESCGGGSCHHHHT--TCE-EEECCCCCHHHHHHHHHHHHHTTCCCBCHH-HHHHHHHTTTT-CHHHHHHHHHHHHH
T ss_pred EEEEeCChhhcchHHHh--hCe-EEEecCCCHHHHHHHHHHHHHHcCCCCCHH-HHHHHHHHcCC-CHHHHHHHHHHHHH
Confidence 88899999999999999 886 899999999999999999998777666554 47788877755 56667777766553
Q ss_pred HHHhcCCCcccHHHHHHH
Q 007575 554 LAGRLNKVVVEKIDFIHA 571 (597)
Q Consensus 554 ~A~r~~~~~It~~d~~~A 571 (597)
. ...|+.+++.++
T Consensus 210 ~-----~~~i~~~~v~~~ 222 (319)
T 2chq_A 210 I-----GEVVDADTIYQI 222 (319)
T ss_dssp S-----SSCBCHHHHHHH
T ss_pred c-----CCCCCHHHHHHH
Confidence 2 235776666544
No 59
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=99.73 E-value=1.1e-17 Score=170.94 Aligned_cols=204 Identities=23% Similarity=0.292 Sum_probs=140.7
Q ss_pred ccccCChHHHHHHHHHHHHhcChhHHhhcCCCCCCceEEeCCCCChHHHHHHHHHHhc---CCCeeeechhhhHH-----
Q 007575 332 ADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEA---EVPFISCSASEFVE----- 403 (597)
Q Consensus 332 ~dV~G~de~k~~L~eiv~~l~~p~~~~~lg~~~p~gVLL~GPPGTGKT~LArAIA~el---~~pfi~is~sef~~----- 403 (597)
++++|++++++.+...+......-. ...++..++||+||||||||++|+++|+.+ +.+++.++|+.+..
T Consensus 17 ~~i~G~~~~~~~l~~~i~~~~~~~~---~~~~~~~~~ll~G~~GtGKt~la~~la~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (311)
T 4fcw_A 17 KRVVGQDEAIRAVADAIRRARAGLK---DPNRPIGSFLFLGPTGVGKTELAKTLAATLFDTEEAMIRIDMTEYMEKHAVS 93 (311)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHTCS---CTTSCSEEEEEESCSSSSHHHHHHHHHHHHHSCGGGEEEEEGGGCCSTTHHH
T ss_pred hhcCCHHHHHHHHHHHHHHHhcCCC---CCCCCceEEEEECCCCcCHHHHHHHHHHHHcCCCcceEEeecccccccccHH
Confidence 4588999999999988875321000 012233479999999999999999999987 56799999886532
Q ss_pred HHhhcch-----HHHHHHHHHHHhcCCeEEEEcCcchhhhhcCCcccccchhHHHHHHHHHHHHhcCCC---------CC
Q 007575 404 LYVGMGA-----SRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFD---------SN 469 (597)
Q Consensus 404 ~~vG~~e-----~~vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~eqtLnqLL~emdg~~---------~~ 469 (597)
...|... .....+.........+||||||+|.+.. .+.+.|+..|+... ..
T Consensus 94 ~l~g~~~~~~~~~~~~~~~~~~~~~~~~vl~lDEi~~l~~---------------~~~~~Ll~~le~~~~~~~~~~~~~~ 158 (311)
T 4fcw_A 94 RLIGAPPGYVGYEEGGQLTEAVRRRPYSVILFDAIEKAHP---------------DVFNILLQMLDDGRLTDSHGRTVDF 158 (311)
T ss_dssp HHHCCCTTSTTTTTCCHHHHHHHHCSSEEEEEETGGGSCH---------------HHHHHHHHHHHHSEEECTTSCEEEC
T ss_pred HhcCCCCccccccccchHHHHHHhCCCeEEEEeChhhcCH---------------HHHHHHHHHHhcCEEEcCCCCEEEC
Confidence 2222110 0001222333344458999999998853 24466666665321 01
Q ss_pred CcEEEEEecCC--------------------------CCCCChhhhCCCCcceEEEecCCCHHHHHHHHHHHHhcC----
Q 007575 470 SAVIVLGATNR--------------------------SDVLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKK---- 519 (597)
Q Consensus 470 ~~VIVIaaTNr--------------------------pd~LD~aLlRpgRFd~~I~v~~Pd~~eR~eILk~~l~~~---- 519 (597)
.++++|+|||. ...++++|++ ||+..+.+.+|+.+++.+|++.++.+.
T Consensus 159 ~~~iiI~ttn~~~~~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~--R~~~~~~~~p~~~~~~~~i~~~~l~~~~~~~ 236 (311)
T 4fcw_A 159 RNTVIIMTSNLGSPLILEGLQKGWPYERIRDEVFKVLQQHFRPEFLN--RLDEIVVFRPLTKEQIRQIVEIQMSYLRARL 236 (311)
T ss_dssp TTEEEEEEESTTHHHHHTTTTSCCCSSTHHHHTHHHHHHHSCHHHHT--TCSEEEECCCCCHHHHHHHHHHHTHHHHHHH
T ss_pred CCcEEEEecccCHHHHHhhhcccccHHHHHHHHHHHHHHhCCHHHHh--cCCeEEEeCCCCHHHHHHHHHHHHHHHHHHH
Confidence 36789999998 4468899988 999999999999999999999877642
Q ss_pred -----CCCCCCCCCHHHHHHhCC--CCCHHHHHHHHHHHHHHHH
Q 007575 520 -----ELPLAKDIDLGDIASMTT--GFTGADLANLVNEAALLAG 556 (597)
Q Consensus 520 -----~~~l~~dvdl~~LA~~t~--G~SgaDL~~Lv~eAal~A~ 556 (597)
...+.++ .++.|+.... ..+.++|.++++++...+.
T Consensus 237 ~~~~~~~~~~~~-~~~~l~~~~~~~~gn~R~L~~~i~~~~~~~~ 279 (311)
T 4fcw_A 237 AEKRISLELTEA-AKDFLAERGYDPVFGARPLRRVIQRELETPL 279 (311)
T ss_dssp HTTTCEEEECHH-HHHHHHHHSCBTTTBTTTHHHHHHHHTHHHH
T ss_pred HhCCcEEEeCHH-HHHHHHHhCCCccCCchhHHHHHHHHHHHHH
Confidence 1122222 3677777766 5678999999998877553
No 60
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=99.73 E-value=2.3e-17 Score=180.53 Aligned_cols=206 Identities=20% Similarity=0.313 Sum_probs=142.3
Q ss_pred CCcccccccCChHHHHHHHHHHHHhcChhHHhhcCCCCCCceEEeCCCCChHHHHHHHHHHhc----------CCCeeee
Q 007575 327 DTITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEA----------EVPFISC 396 (597)
Q Consensus 327 ~~vtf~dV~G~de~k~~L~eiv~~l~~p~~~~~lg~~~p~gVLL~GPPGTGKT~LArAIA~el----------~~pfi~i 396 (597)
..-+|++|+|.++.++.+.+++.. ..+.++||+||||||||++|+++|.++ +.+|+.+
T Consensus 175 r~~~ld~iiGr~~~i~~l~~~l~r------------~~~~~~LL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l 242 (468)
T 3pxg_A 175 KEDSLDPVIGRSKEIQRVIEVLSR------------RTKNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVMTL 242 (468)
T ss_dssp TSSCSCCCCCCHHHHHHHHHHHHC------------SSSCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCEECC
T ss_pred hcCCCCCccCcHHHHHHHHHHHhc------------cCCCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEEe
Confidence 345789999999998887776642 234579999999999999999999986 7889999
Q ss_pred chhhhHHHHhhcchHHHHHHHHHHHhcCCeEEEEcCcchhhhhcCCcccccchhHHHHHHHHHHHHhcCCCCCCcEEEEE
Q 007575 397 SASEFVELYVGMGASRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLG 476 (597)
Q Consensus 397 s~sef~~~~vG~~e~~vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~eqtLnqLL~emdg~~~~~~VIVIa 476 (597)
+++ ..+.|..+..++.+|..+....|+||||| + .. ...+.|+..|+ ...+.+|+
T Consensus 243 ~~~---~~~~g~~e~~~~~~~~~~~~~~~~iLfiD-----~-~~-------------~a~~~L~~~L~----~g~v~vI~ 296 (468)
T 3pxg_A 243 DMG---TKYRGEFEDRLKKVMDEIRQAGNIILFID-----A-AI-------------DASNILKPSLA----RGELQCIG 296 (468)
T ss_dssp -------------CTTHHHHHHHHHTCCCCEEEEC-----C----------------------CCCTT----SSSCEEEE
T ss_pred eCC---ccccchHHHHHHHHHHHHHhcCCeEEEEe-----C-ch-------------hHHHHHHHhhc----CCCEEEEe
Confidence 987 67788888999999999998889999999 1 00 12244554444 45689999
Q ss_pred ecCCCC-----CCChhhhCCCCcceEEEecCCCHHHHHHHHHHHHhc----CCCCCCCCCCHHHHHHhCCC-----CCHH
Q 007575 477 ATNRSD-----VLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSK----KELPLAKDIDLGDIASMTTG-----FTGA 542 (597)
Q Consensus 477 aTNrpd-----~LD~aLlRpgRFd~~I~v~~Pd~~eR~eILk~~l~~----~~~~l~~dvdl~~LA~~t~G-----~Sga 542 (597)
+||.++ .+|++|.| ||+ .|.|+.|+.+++.+|++.++.. .+..+.++ .+..++..+.+ +.+.
T Consensus 297 at~~~e~~~~~~~~~al~~--Rf~-~i~v~~p~~e~~~~iL~~~~~~~~~~~~~~i~~~-al~~l~~~s~~~~~~~~lp~ 372 (468)
T 3pxg_A 297 ATTLDEYRKYIEKDAALER--RFQ-PIQVDQPSVDESIQILQGLRDRYEAHHRVSITDD-AIEAAVKLSDRYISDRFLPD 372 (468)
T ss_dssp ECCTTTTHHHHTTCSHHHH--SEE-EEECCCCCHHHHHHHHHHTTTTSGGGSSCSCCHH-HHHHHHHHHHHSSCCSCTTH
T ss_pred cCCHHHHHHHhhcCHHHHH--hCc-cceeCCCCHHHHHHHHHHHHHHHHHhcCCCCCHH-HHHHHHHHHHHHhccCcCCc
Confidence 999987 68999999 998 5999999999999999988765 33444333 35666655433 4456
Q ss_pred HHHHHHHHHHHHHHhcCC-CcccHHHHHHHHHH
Q 007575 543 DLANLVNEAALLAGRLNK-VVVEKIDFIHAVER 574 (597)
Q Consensus 543 DL~~Lv~eAal~A~r~~~-~~It~~d~~~Al~~ 574 (597)
...+++++|+..+..... ..-+..+++..+++
T Consensus 373 ~ai~ll~~a~~~~~~~~~~~p~~i~~l~~~i~~ 405 (468)
T 3pxg_A 373 KAIDLIDEAGSKVRLRSFTTPPNLKELEQKLDE 405 (468)
T ss_dssp HHHHHHHHHHHHHHHHTTSCCSSTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccCCCchHHHHHHHHHHH
Confidence 888999988876554432 22233444444443
No 61
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=99.73 E-value=7e-17 Score=168.99 Aligned_cols=225 Identities=15% Similarity=0.129 Sum_probs=161.2
Q ss_pred CcccccccCChHHHHHHHHHHHHhcChhHHhhcCCCCCC--ceEEeCCCCChHHHHHHHHHHhc----CCCeeeechhhh
Q 007575 328 TITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPR--GVLLVGLPGTGKTLLAKAVAGEA----EVPFISCSASEF 401 (597)
Q Consensus 328 ~vtf~dV~G~de~k~~L~eiv~~l~~p~~~~~lg~~~p~--gVLL~GPPGTGKT~LArAIA~el----~~pfi~is~sef 401 (597)
+..+++++|.++..+.|.+.+..... + ..+. .++|+||||||||++++++++++ +.+++.++|...
T Consensus 13 ~~~p~~l~gr~~~~~~l~~~l~~~~~-------~-~~~~~~~~li~G~~G~GKTtl~~~l~~~~~~~~~~~~~~i~~~~~ 84 (389)
T 1fnn_A 13 SYVPKRLPHREQQLQQLDILLGNWLR-------N-PGHHYPRATLLGRPGTGKTVTLRKLWELYKDKTTARFVYINGFIY 84 (389)
T ss_dssp TCCCSCCTTCHHHHHHHHHHHHHHHH-------S-TTSSCCEEEEECCTTSSHHHHHHHHHHHHTTSCCCEEEEEETTTC
T ss_pred ccCCCCCCChHHHHHHHHHHHHHHHc-------C-CCCCCCeEEEECCCCCCHHHHHHHHHHHHhhhcCeeEEEEeCccC
Confidence 34458899999999888888764311 1 2233 79999999999999999999988 678888887643
Q ss_pred H------HHHh----------hcchHHHH-HHHHHHH-hcCCeEEEEcCcchhhhhcCCcccccchhHHHHHHHHHHHHh
Q 007575 402 V------ELYV----------GMGASRVR-DLFARAK-KEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEM 463 (597)
Q Consensus 402 ~------~~~v----------G~~e~~vr-~lF~~A~-~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~eqtLnqLL~em 463 (597)
. .... +.....+. .+..... ...|.||+|||+|.+. ...++.|+..+
T Consensus 85 ~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l~---------------~~~~~~L~~~~ 149 (389)
T 1fnn_A 85 RNFTAIIGEIARSLNIPFPRRGLSRDEFLALLVEHLRERDLYMFLVLDDAFNLA---------------PDILSTFIRLG 149 (389)
T ss_dssp CSHHHHHHHHHHHTTCCCCSSCCCHHHHHHHHHHHHHHTTCCEEEEEETGGGSC---------------HHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHhCccCCCCCCCHHHHHHHHHHHHhhcCCeEEEEEECccccc---------------hHHHHHHHHHH
Confidence 2 1110 11122222 2222222 2458899999999882 23556677766
Q ss_pred cCCCC--CCcEEEEEecCCC---CCCChhhhCCCCcce-EEEecCCCHHHHHHHHHHHHhcC--CCCCCCCCCHHHHHHh
Q 007575 464 DGFDS--NSAVIVLGATNRS---DVLDPALRRPGRFDR-VVMVETPDKIGREAILKVHVSKK--ELPLAKDIDLGDIASM 535 (597)
Q Consensus 464 dg~~~--~~~VIVIaaTNrp---d~LD~aLlRpgRFd~-~I~v~~Pd~~eR~eILk~~l~~~--~~~l~~dvdl~~LA~~ 535 (597)
+.+.. ..++.+|++||.+ +.+++.+.+ ||.. .+.+++++.++..++++.++... ...+.++ .++.++..
T Consensus 150 ~~~~~~~~~~~~iI~~~~~~~~~~~l~~~~~~--r~~~~~i~~~pl~~~~~~~~l~~~~~~~~~~~~~~~~-~~~~l~~~ 226 (389)
T 1fnn_A 150 QEADKLGAFRIALVIVGHNDAVLNNLDPSTRG--IMGKYVIRFSPYTKDQIFDILLDRAKAGLAEGSYSED-ILQMIADI 226 (389)
T ss_dssp TCHHHHSSCCEEEEEEESSTHHHHTSCHHHHH--HHTTCEEECCCCBHHHHHHHHHHHHHHHBCTTSSCHH-HHHHHHHH
T ss_pred HhCCCCCcCCEEEEEEECCchHHHHhCHHhhh--cCCCceEEeCCCCHHHHHHHHHHHHHhhcCCCCCCHH-HHHHHHHH
Confidence 54332 1478888899887 678888888 7764 89999999999999999888641 1233333 47788888
Q ss_pred CC--------CCCHHHHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHhcc
Q 007575 536 TT--------GFTGADLANLVNEAALLAGRLNKVVVEKIDFIHAVERSIAV 578 (597)
Q Consensus 536 t~--------G~SgaDL~~Lv~eAal~A~r~~~~~It~~d~~~Al~~v~~g 578 (597)
+. +-.++.+.++++.|...|..++...|+.+++..+++.+...
T Consensus 227 ~~~~~~~~~~~G~~r~~~~~l~~a~~~a~~~~~~~i~~~~v~~~~~~~~~~ 277 (389)
T 1fnn_A 227 TGAQTPLDTNRGDARLAIDILYRSAYAAQQNGRKHIAPEDVRKSSKEVLFG 277 (389)
T ss_dssp HSBSSTTCTTSCCHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHHSCC
T ss_pred HhhcccCCCCCCcHHHHHHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHhhh
Confidence 83 23678899999999999988888899999999998887543
No 62
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.72 E-value=1.1e-16 Score=163.26 Aligned_cols=203 Identities=18% Similarity=0.228 Sum_probs=148.5
Q ss_pred CCCcccccccCChHHHHHHHHHHHHhcChhHHhhcCCCCCCceEEeCCCCChHHHHHHHHHHhc-----CCCeeeechhh
Q 007575 326 GDTITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEA-----EVPFISCSASE 400 (597)
Q Consensus 326 ~~~vtf~dV~G~de~k~~L~eiv~~l~~p~~~~~lg~~~p~gVLL~GPPGTGKT~LArAIA~el-----~~pfi~is~se 400 (597)
..+.+|++++|.+++++.|.+.+.. .+.|. +||+||||+|||++|++++.++ +.+++.+++++
T Consensus 15 ~~p~~~~~~~g~~~~~~~l~~~l~~-----------~~~~~-~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~ 82 (323)
T 1sxj_B 15 YRPQVLSDIVGNKETIDRLQQIAKD-----------GNMPH-MIISGMPGIGKTTSVHCLAHELLGRSYADGVLELNASD 82 (323)
T ss_dssp TCCSSGGGCCSCTHHHHHHHHHHHS-----------CCCCC-EEEECSTTSSHHHHHHHHHHHHHGGGHHHHEEEECTTS
T ss_pred cCCCCHHHHHCCHHHHHHHHHHHHc-----------CCCCe-EEEECcCCCCHHHHHHHHHHHhcCCcccCCEEEecCcc
Confidence 4456799999999999988887651 23344 9999999999999999999986 35577777664
Q ss_pred hHHHHhhcchHHHHHHHHHHH-------hcCCeEEEEcCcchhhhhcCCcccccchhHHHHHHHHHHHHhcCCCCCCcEE
Q 007575 401 FVELYVGMGASRVRDLFARAK-------KEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVI 473 (597)
Q Consensus 401 f~~~~vG~~e~~vr~lF~~A~-------~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~eqtLnqLL~emdg~~~~~~VI 473 (597)
. .+...+++++.... ...++||+|||+|.+... ..+.|+..++.. ...++
T Consensus 83 ~------~~~~~i~~~~~~~~~~~~~~~~~~~~viiiDe~~~l~~~---------------~~~~L~~~le~~--~~~~~ 139 (323)
T 1sxj_B 83 D------RGIDVVRNQIKHFAQKKLHLPPGKHKIVILDEADSMTAG---------------AQQALRRTMELY--SNSTR 139 (323)
T ss_dssp C------CSHHHHHTHHHHHHHBCCCCCTTCCEEEEEESGGGSCHH---------------HHHTTHHHHHHT--TTTEE
T ss_pred c------cChHHHHHHHHHHHhccccCCCCCceEEEEECcccCCHH---------------HHHHHHHHHhcc--CCCce
Confidence 2 12345566666554 334789999999998532 234556666532 34577
Q ss_pred EEEecCCCCCCChhhhCCCCcceEEEecCCCHHHHHHHHHHHHhcCCCCCCCCCCHHHHHHhCCCCCHHHHHHHHHHHHH
Q 007575 474 VLGATNRSDVLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTTGFTGADLANLVNEAAL 553 (597)
Q Consensus 474 VIaaTNrpd~LD~aLlRpgRFd~~I~v~~Pd~~eR~eILk~~l~~~~~~l~~dvdl~~LA~~t~G~SgaDL~~Lv~eAal 553 (597)
+|.+||.++.+++++.+ |+. .+.+++|+.++..++++.++...+..+.++ .++.++..+.| +.+.+.++++.++.
T Consensus 140 ~il~~~~~~~l~~~l~s--r~~-~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~-~~~~l~~~~~G-~~r~a~~~l~~~~~ 214 (323)
T 1sxj_B 140 FAFACNQSNKIIEPLQS--QCA-ILRYSKLSDEDVLKRLLQIIKLEDVKYTND-GLEAIIFTAEG-DMRQAINNLQSTVA 214 (323)
T ss_dssp EEEEESCGGGSCHHHHT--TSE-EEECCCCCHHHHHHHHHHHHHHHTCCBCHH-HHHHHHHHHTT-CHHHHHHHHHHHHH
T ss_pred EEEEeCChhhchhHHHh--hce-EEeecCCCHHHHHHHHHHHHHHcCCCCCHH-HHHHHHHHcCC-CHHHHHHHHHHHHh
Confidence 77888989999999998 775 899999999999999999887666665544 47788888865 56677777776653
Q ss_pred HHHhcCCCcccHHHHHHHHH
Q 007575 554 LAGRLNKVVVEKIDFIHAVE 573 (597)
Q Consensus 554 ~A~r~~~~~It~~d~~~Al~ 573 (597)
.. ..|+.+++.+++.
T Consensus 215 ~~-----~~i~~~~v~~~~~ 229 (323)
T 1sxj_B 215 GH-----GLVNADNVFKIVD 229 (323)
T ss_dssp HH-----SSBCHHHHHHHHT
T ss_pred cC-----CCcCHHHHHHHHC
Confidence 22 3578887766643
No 63
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=99.72 E-value=1.7e-16 Score=165.64 Aligned_cols=208 Identities=20% Similarity=0.228 Sum_probs=149.5
Q ss_pred CCcccccccCChHHHHHHHHHHHHhcChhHHhhcCCCCCCceEEeCCCCChHHHHHHHHHHhcCCCe--eeechh---hh
Q 007575 327 DTITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPF--ISCSAS---EF 401 (597)
Q Consensus 327 ~~vtf~dV~G~de~k~~L~eiv~~l~~p~~~~~lg~~~p~gVLL~GPPGTGKT~LArAIA~el~~pf--i~is~s---ef 401 (597)
.+.+|++++|.+++++.|...+.. .+.+..+||+||||||||++|++++++++... ....|. ..
T Consensus 11 rp~~~~~~vg~~~~~~~L~~~l~~-----------~~~~~~~ll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~ 79 (373)
T 1jr3_A 11 RPQTFADVVGQEHVLTALANGLSL-----------GRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCDNC 79 (373)
T ss_dssp CCCSTTTSCSCHHHHHHHHHHHHH-----------TCCCSEEEEESCTTSSHHHHHHHHHHHHSCTTCSCSSCCSSSHHH
T ss_pred CCCchhhccCcHHHHHHHHHHHHh-----------CCCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCcccHHH
Confidence 445789999999999988888752 23456799999999999999999999875421 111111 11
Q ss_pred HHHH-------h------hcchHHHHHHHHHHHh----cCCeEEEEcCcchhhhhcCCcccccchhHHHHHHHHHHHHhc
Q 007575 402 VELY-------V------GMGASRVRDLFARAKK----EAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMD 464 (597)
Q Consensus 402 ~~~~-------v------G~~e~~vr~lF~~A~~----~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~eqtLnqLL~emd 464 (597)
.... . ..+...++++++.+.. ..+.||+|||+|.+.. ...+.|+..++
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~vliiDe~~~l~~---------------~~~~~Ll~~le 144 (373)
T 1jr3_A 80 REIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSR---------------HSFNALLKTLE 144 (373)
T ss_dssp HHHHTSCCSSCEEEETTCSCCSSCHHHHHHHTTSCCSSSSSEEEEEECGGGSCH---------------HHHHHHHHHHH
T ss_pred HHHhccCCCceEEecccccCCHHHHHHHHHHHhhccccCCeEEEEEECcchhcH---------------HHHHHHHHHHh
Confidence 0000 0 0123456777776653 3468999999998842 24467777777
Q ss_pred CCCCCCcEEEEEecCCCCCCChhhhCCCCcceEEEecCCCHHHHHHHHHHHHhcCCCCCCCCCCHHHHHHhCCCCCHHHH
Q 007575 465 GFDSNSAVIVLGATNRSDVLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTTGFTGADL 544 (597)
Q Consensus 465 g~~~~~~VIVIaaTNrpd~LD~aLlRpgRFd~~I~v~~Pd~~eR~eILk~~l~~~~~~l~~dvdl~~LA~~t~G~SgaDL 544 (597)
. ....+++|++|+.++.+.+.+.+ |+ ..+.+++|+.++..++++.++.+.+..+.++ .++.++..+.| +++++
T Consensus 145 ~--~~~~~~~Il~~~~~~~l~~~l~s--r~-~~i~~~~l~~~~~~~~l~~~~~~~~~~~~~~-a~~~l~~~~~G-~~r~~ 217 (373)
T 1jr3_A 145 E--PPEHVKFLLATTDPQKLPVTILS--RC-LQFHLKALDVEQIRHQLEHILNEEHIAHEPR-ALQLLARAAEG-SLRDA 217 (373)
T ss_dssp S--CCSSEEEEEEESCGGGSCHHHHT--TS-EEEECCCCCHHHHHHHHHHHHHHHTCCBCHH-HHHHHHHHSSS-CHHHH
T ss_pred c--CCCceEEEEEeCChHhCcHHHHh--he-eEeeCCCCCHHHHHHHHHHHHHHcCCCCCHH-HHHHHHHHCCC-CHHHH
Confidence 4 34568888888888899999988 77 5899999999999999999987766665544 37788888876 78899
Q ss_pred HHHHHHHHHHHHhcCCCcccHHHHHHH
Q 007575 545 ANLVNEAALLAGRLNKVVVEKIDFIHA 571 (597)
Q Consensus 545 ~~Lv~eAal~A~r~~~~~It~~d~~~A 571 (597)
.++++.+...+ ...|+.++++++
T Consensus 218 ~~~l~~~~~~~----~~~i~~~~v~~~ 240 (373)
T 1jr3_A 218 LSLTDQAIASG----DGQVSTQAVSAM 240 (373)
T ss_dssp HHHHHHHHHHT----TTCBCHHHHHHH
T ss_pred HHHHHHHHHhc----CCcccHHHHHHH
Confidence 99998876543 245777777554
No 64
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=99.70 E-value=1.5e-17 Score=173.68 Aligned_cols=217 Identities=12% Similarity=0.076 Sum_probs=148.0
Q ss_pred ccCChHHHHHHHHHHHHhcChhHHhhcCCCCCCceEEeCCCCChHHHHHHHHHHhc----------CCCeeeechhhhHH
Q 007575 334 VAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEA----------EVPFISCSASEFVE 403 (597)
Q Consensus 334 V~G~de~k~~L~eiv~~l~~p~~~~~lg~~~p~gVLL~GPPGTGKT~LArAIA~el----------~~pfi~is~sef~~ 403 (597)
+.|.++..+.|...+... +....|.+++|+||||||||+++++++.++ ++.+++++|..+.+
T Consensus 22 L~~Re~E~~~i~~~L~~~--------i~~~~~~~lli~GpPGTGKT~~v~~v~~~L~~~~~~~~~~~~~~v~INc~~~~t 93 (318)
T 3te6_A 22 LKSQVEDFTRIFLPIYDS--------LMSSQNKLFYITNADDSTKFQLVNDVMDELITSSARKELPIFDYIHIDALELAG 93 (318)
T ss_dssp HHHHHHHHHHHHHHHHHH--------HHTTCCCEEEEECCCSHHHHHHHHHHHHHHHHTTTTTSSCCEEEEEEETTCCC-
T ss_pred cCCHHHHHHHHHHHHHHH--------hcCCCCCeEEEECCCCCCHHHHHHHHHHHHHHHhhhccCCceEEEEEeccccCC
Confidence 566666666666555432 123467899999999999999999999987 35678888865322
Q ss_pred ----------HHh------hcchHHHHHHHHHH--HhcCCeEEEEcCcchhhhhcCCcccccchhHHHHHHHHHHHHhcC
Q 007575 404 ----------LYV------GMGASRVRDLFARA--KKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDG 465 (597)
Q Consensus 404 ----------~~v------G~~e~~vr~lF~~A--~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~eqtLnqLL~emdg 465 (597)
.+. +.....++.+|... ....++||+|||+|.+. . ..++..|+....
T Consensus 94 ~~~~~~~I~~~L~g~~~~~~~~~~~L~~~f~~~~~~~~~~~ii~lDE~d~l~--~------------q~~L~~l~~~~~- 158 (318)
T 3te6_A 94 MDALYEKIWFAISKENLCGDISLEALNFYITNVPKAKKRKTLILIQNPENLL--S------------EKILQYFEKWIS- 158 (318)
T ss_dssp -HHHHHHHHHHHSCCC--CCCCHHHHHHHHHHSCGGGSCEEEEEEECCSSSC--C------------THHHHHHHHHHH-
T ss_pred HHHHHHHHHHHhcCCCCCchHHHHHHHHHHHHhhhccCCceEEEEecHHHhh--c------------chHHHHHHhccc-
Confidence 222 23456678888875 35668899999999997 1 135566665443
Q ss_pred CCCCCcEEEEEecCCCCCCC----hhhhCCCCcc-eEEEecCCCHHHHHHHHHHHHhcCCCC------------------
Q 007575 466 FDSNSAVIVLGATNRSDVLD----PALRRPGRFD-RVVMVETPDKIGREAILKVHVSKKELP------------------ 522 (597)
Q Consensus 466 ~~~~~~VIVIaaTNrpd~LD----~aLlRpgRFd-~~I~v~~Pd~~eR~eILk~~l~~~~~~------------------ 522 (597)
.....++||+.+|..+..+ +++.+ ||. ..+.|++++.++..+|++.++....-.
T Consensus 159 -~~~s~~~vI~i~n~~d~~~~~L~~~v~S--R~~~~~i~F~pYt~~el~~Il~~Rl~~~~~~~f~~~~~~~~~~~~~~~~ 235 (318)
T 3te6_A 159 -SKNSKLSIICVGGHNVTIREQINIMPSL--KAHFTEIKLNKVDKNELQQMIITRLKSLLKPFHVKVNDKKEMTIYNNIR 235 (318)
T ss_dssp -CSSCCEEEEEECCSSCCCHHHHHTCHHH--HTTEEEEECCCCCHHHHHHHHHHHHHHHCCCEEEEECTTCCEEECCCC-
T ss_pred -ccCCcEEEEEEecCcccchhhcchhhhc--cCCceEEEeCCCCHHHHHHHHHHHHHhhhcccccccccccccccccccc
Confidence 2356799999999987644 44455 786 689999999999999999998753211
Q ss_pred -----------------CCCCCCHHHHHHhCCC--CCHHHHHHHHHHHHHHHHhc---------CCCcccHHHHHHHHHH
Q 007575 523 -----------------LAKDIDLGDIASMTTG--FTGADLANLVNEAALLAGRL---------NKVVVEKIDFIHAVER 574 (597)
Q Consensus 523 -----------------l~~dvdl~~LA~~t~G--~SgaDL~~Lv~eAal~A~r~---------~~~~It~~d~~~Al~~ 574 (597)
+.++ .++.+|+.... -..+..-++|+.|+..|.++ +...|+.+.+..++..
T Consensus 236 ~~~~~~~~~~~~~~~~~i~~~-ai~~~A~~vA~~~GD~R~Al~ilr~A~~~ae~e~~~k~~~~~~~~~i~~~~~~~~~~~ 314 (318)
T 3te6_A 236 EGQNQKIPDNVIVINHKINNK-ITQLIAKNVANVSGSTEKAFKICEAAVEISKKDFVRKGGLQKGKLVVSQEMVPRYFSE 314 (318)
T ss_dssp -------CTTEEEECEECCHH-HHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHHHHHHTTEETTEECCSEECCTHHHHH
T ss_pred ccccccccccccccccccCHH-HHHHHHHHHHhhCChHHHHHHHHHHHHHHHHHHHHhccCCCCCcEEeeHHHHHHHHHH
Confidence 1111 25666664321 23456667888888888553 3345777777777776
Q ss_pred Hhc
Q 007575 575 SIA 577 (597)
Q Consensus 575 v~~ 577 (597)
++.
T Consensus 315 ~~~ 317 (318)
T 3te6_A 315 AIN 317 (318)
T ss_dssp HHC
T ss_pred Hhc
Confidence 654
No 65
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=99.70 E-value=7.3e-17 Score=188.50 Aligned_cols=204 Identities=24% Similarity=0.321 Sum_probs=138.3
Q ss_pred CcccccccCChHHHHHHHHHHHHhcChhHHhhcCCCCCCceEEeCCCCChHHHHHHHHHHhc----------CCCeeeec
Q 007575 328 TITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEA----------EVPFISCS 397 (597)
Q Consensus 328 ~vtf~dV~G~de~k~~L~eiv~~l~~p~~~~~lg~~~p~gVLL~GPPGTGKT~LArAIA~el----------~~pfi~is 397 (597)
.-+|++++|.++..+.+.+++. .+.+.++||+||||||||++|+++|+++ +.+++.++
T Consensus 166 ~~~ld~viGr~~~i~~l~~~l~------------~~~~~~vlL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~ 233 (854)
T 1qvr_A 166 EGKLDPVIGRDEEIRRVIQILL------------RRTKNNPVLIGEPGVGKTAIVEGLAQRIVKGDVPEGLKGKRIVSLQ 233 (854)
T ss_dssp TTCSCCCCSCHHHHHHHHHHHH------------CSSCCCCEEEECTTSCHHHHHHHHHHHHHHTCSCTTSTTCEEEEEC
T ss_pred cCCCcccCCcHHHHHHHHHHHh------------cCCCCceEEEcCCCCCHHHHHHHHHHHHhcCCCchhhcCCeEEEee
Confidence 4678999999987766666553 1345679999999999999999999987 88999999
Q ss_pred hhhhH--HHHhhcchHHHHHHHHHHHhc-CCeEEEEcCcchhhhhcCCcccccchhHHHHHHHHHHHHhcCCCCCCcEEE
Q 007575 398 ASEFV--ELYVGMGASRVRDLFARAKKE-APSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIV 474 (597)
Q Consensus 398 ~sef~--~~~vG~~e~~vr~lF~~A~~~-aP~ILfIDEIDaL~~~r~~~~~~~~~~e~eqtLnqLL~emdg~~~~~~VIV 474 (597)
++.+. ..+.|..+..++.+|..+... .|+||||||+|.+....... + .....+.|...++ ...+.+
T Consensus 234 ~~~l~~g~~~~g~~~~~l~~~~~~~~~~~~~~iL~IDEi~~l~~~~~~~----g---~~~~~~~L~~~l~----~~~i~~ 302 (854)
T 1qvr_A 234 MGSLLAGAKYRGEFEERLKAVIQEVVQSQGEVILFIDELHTVVGAGKAE----G---AVDAGNMLKPALA----RGELRL 302 (854)
T ss_dssp C-----------CHHHHHHHHHHHHHTTCSSEEEEECCC--------------------------HHHHH----TTCCCE
T ss_pred hHHhhccCccchHHHHHHHHHHHHHHhcCCCeEEEEecHHHHhccCCcc----c---hHHHHHHHHHHHh----CCCeEE
Confidence 99887 567888899999999999875 68999999999997554221 1 1223344444454 245778
Q ss_pred EEecCCCC----CCChhhhCCCCcceEEEecCCCHHHHHHHHHHHHhcC----CCCCCCCCCHHHHHHh-----CCCCCH
Q 007575 475 LGATNRSD----VLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKK----ELPLAKDIDLGDIASM-----TTGFTG 541 (597)
Q Consensus 475 IaaTNrpd----~LD~aLlRpgRFd~~I~v~~Pd~~eR~eILk~~l~~~----~~~l~~dvdl~~LA~~-----t~G~Sg 541 (597)
|++||.++ .+|++|.| ||+. +.++.|+.+++.+|++.++... ++.+.++ .+..++.. +..+.+
T Consensus 303 I~at~~~~~~~~~~d~aL~r--Rf~~-i~l~~p~~~e~~~iL~~~~~~~~~~~~~~i~~~-al~~~~~ls~r~i~~~~lp 378 (854)
T 1qvr_A 303 IGATTLDEYREIEKDPALER--RFQP-VYVDEPTVEETISILRGLKEKYEVHHGVRISDS-AIIAAATLSHRYITERRLP 378 (854)
T ss_dssp EEEECHHHHHHHTTCTTTCS--CCCC-EEECCCCHHHHHHHHHHHHHHHHHHTTCEECHH-HHHHHHHHHHHHCCSSCTH
T ss_pred EEecCchHHhhhccCHHHHh--CCce-EEeCCCCHHHHHHHHHhhhhhhhhhcCCCCCHH-HHHHHHHHHhhhcccccCh
Confidence 89998774 47999999 9985 9999999999999998776532 3333333 25555543 345778
Q ss_pred HHHHHHHHHHHHHHHhc
Q 007575 542 ADLANLVNEAALLAGRL 558 (597)
Q Consensus 542 aDL~~Lv~eAal~A~r~ 558 (597)
.....++.+|+..+...
T Consensus 379 ~kai~lldea~a~~~~~ 395 (854)
T 1qvr_A 379 DKAIDLIDEAAARLRMA 395 (854)
T ss_dssp HHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHhh
Confidence 88999999988776543
No 66
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=99.69 E-value=7.3e-17 Score=186.01 Aligned_cols=198 Identities=20% Similarity=0.290 Sum_probs=140.2
Q ss_pred ccccCChHHHHHHHHHHHHhcChhHHhhcCCCCCC-ceEEeCCCCChHHHHHHHHHHhc---CCCeeeechhhhHHHHhh
Q 007575 332 ADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPR-GVLLVGLPGTGKTLLAKAVAGEA---EVPFISCSASEFVELYVG 407 (597)
Q Consensus 332 ~dV~G~de~k~~L~eiv~~l~~p~~~~~lg~~~p~-gVLL~GPPGTGKT~LArAIA~el---~~pfi~is~sef~~~~vG 407 (597)
++++|++++++.+.+.+........ ....|. ++||+||||||||++|+++|..+ +.+|+.++|+++.+.+..
T Consensus 491 ~~viGq~~a~~~l~~~i~~~~~~~~----~~~~p~~~~Ll~Gp~GtGKT~lA~ala~~l~~~~~~~i~i~~s~~~~~~~~ 566 (758)
T 3pxi_A 491 SRVIGQDEAVVAVAKAVRRARAGLK----DPKRPIGSFIFLGPTGVGKTELARALAESIFGDEESMIRIDMSEYMEKHST 566 (758)
T ss_dssp TTSCSCHHHHHHHHHHHHHHTTTCS----CTTSCSEEEEEESCTTSSHHHHHHHHHHHHHSCTTCEEEEEGGGGCSSCCC
T ss_pred CcCcChHHHHHHHHHHHHHHHcccC----CCCCCceEEEEECCCCCCHHHHHHHHHHHhcCCCcceEEEechhccccccc
Confidence 5789999999999988876432110 011233 69999999999999999999987 789999999999876554
Q ss_pred cchHHHHHHHHHHHhcCCeEEEEcCcchhhhhcCCcccccchhHHHHHHHHHHHHhcCCC---------CCCcEEEEEec
Q 007575 408 MGASRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFD---------SNSAVIVLGAT 478 (597)
Q Consensus 408 ~~e~~vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~eqtLnqLL~emdg~~---------~~~~VIVIaaT 478 (597)
. ...++...+...++||||||||.+.. .+.+.|+..|+... ...+++||+||
T Consensus 567 ~----~~~l~~~~~~~~~~vl~lDEi~~~~~---------------~~~~~Ll~~le~g~~~~~~g~~~~~~~~~iI~tt 627 (758)
T 3pxi_A 567 S----GGQLTEKVRRKPYSVVLLDAIEKAHP---------------DVFNILLQVLEDGRLTDSKGRTVDFRNTILIMTS 627 (758)
T ss_dssp C-------CHHHHHHCSSSEEEEECGGGSCH---------------HHHHHHHHHHHHSBCC-----CCBCTTCEEEEEE
T ss_pred c----cchhhHHHHhCCCeEEEEeCccccCH---------------HHHHHHHHHhccCeEEcCCCCEeccCCeEEEEeC
Confidence 4 22233444556678999999998742 35567777776421 23467999999
Q ss_pred CCCCC------------CChhhhCCCCcceEEEecCCCHHHHHHHHHHHHhcC---------CCCCCCCCCHHHHHHh--
Q 007575 479 NRSDV------------LDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKK---------ELPLAKDIDLGDIASM-- 535 (597)
Q Consensus 479 Nrpd~------------LD~aLlRpgRFd~~I~v~~Pd~~eR~eILk~~l~~~---------~~~l~~dvdl~~LA~~-- 535 (597)
|.+.. +.|+|+. |||.+|.+++|+.+++.+|++.++... .+.+.++ .++.|+..
T Consensus 628 n~~~~~~~~~~~~~~~~f~p~l~~--Rl~~~i~~~~l~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~-a~~~l~~~~~ 704 (758)
T 3pxi_A 628 NVGASEKDKVMGELKRAFRPEFIN--RIDEIIVFHSLEKKHLTEIVSLMSDQLTKRLKEQDLSIELTDA-AKAKVAEEGV 704 (758)
T ss_dssp SSSTTCCHHHHHHHHHHSCHHHHT--TSSEEEECC--CHHHHHHHHHHHHHHHHHHHHTTTCEEEECHH-HHHHHHGGGC
T ss_pred CCChhhHHHHHHHHHhhCCHHHHh--hCCeEEecCCCCHHHHHHHHHHHHHHHHHHHHhCCCeEEECHH-HHHHHHHhCC
Confidence 97654 7888988 999999999999999999998877542 1122222 25666653
Q ss_pred CCCCCHHHHHHHHHHHHHHH
Q 007575 536 TTGFTGADLANLVNEAALLA 555 (597)
Q Consensus 536 t~G~SgaDL~~Lv~eAal~A 555 (597)
...+..++|.++++++...+
T Consensus 705 ~~~~~~R~L~~~i~~~v~~~ 724 (758)
T 3pxi_A 705 DLEYGARPLRRAIQKHVEDR 724 (758)
T ss_dssp CTTTTTTTHHHHHHHHTHHH
T ss_pred CCCCCChHHHHHHHHHHHHH
Confidence 34566789999988765543
No 67
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=99.69 E-value=4.4e-16 Score=159.05 Aligned_cols=189 Identities=23% Similarity=0.287 Sum_probs=137.1
Q ss_pred CCCCcccccccCChHHHHHHHHHHHHhcChhHHhhcCCCCCCceEEeCCCCChHHHHHHHHHHhcC-----CCeeeechh
Q 007575 325 QGDTITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAE-----VPFISCSAS 399 (597)
Q Consensus 325 ~~~~vtf~dV~G~de~k~~L~eiv~~l~~p~~~~~lg~~~p~gVLL~GPPGTGKT~LArAIA~el~-----~pfi~is~s 399 (597)
...+.+|++++|++++++.|...+.. + .. .++||+||||||||++|+++++++. .+++.++++
T Consensus 18 k~~p~~~~~~~g~~~~~~~l~~~l~~----------~-~~-~~~ll~G~~G~GKT~la~~l~~~l~~~~~~~~~~~~~~~ 85 (327)
T 1iqp_A 18 KYRPQRLDDIVGQEHIVKRLKHYVKT----------G-SM-PHLLFAGPPGVGKTTAALALARELFGENWRHNFLELNAS 85 (327)
T ss_dssp HTCCCSTTTCCSCHHHHHHHHHHHHH----------T-CC-CEEEEESCTTSSHHHHHHHHHHHHHGGGHHHHEEEEETT
T ss_pred ccCCCCHHHhhCCHHHHHHHHHHHHc----------C-CC-CeEEEECcCCCCHHHHHHHHHHHhcCCcccCceEEeecc
Confidence 34567899999999999998887752 1 22 2499999999999999999999863 346777776
Q ss_pred hhHHHHhhcchHHHHHHHHHHH------hcCCeEEEEcCcchhhhhcCCcccccchhHHHHHHHHHHHHhcCCCCCCcEE
Q 007575 400 EFVELYVGMGASRVRDLFARAK------KEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVI 473 (597)
Q Consensus 400 ef~~~~vG~~e~~vr~lF~~A~------~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~eqtLnqLL~emdg~~~~~~VI 473 (597)
+.... ..+++.+.... ...++||+|||+|.+... ..+.|+..|+.. ...++
T Consensus 86 ~~~~~------~~~~~~~~~~~~~~~~~~~~~~vliiDe~~~l~~~---------------~~~~L~~~le~~--~~~~~ 142 (327)
T 1iqp_A 86 DERGI------NVIREKVKEFARTKPIGGASFKIIFLDEADALTQD---------------AQQALRRTMEMF--SSNVR 142 (327)
T ss_dssp CHHHH------HTTHHHHHHHHHSCCGGGCSCEEEEEETGGGSCHH---------------HHHHHHHHHHHT--TTTEE
T ss_pred ccCch------HHHHHHHHHHHhhCCcCCCCCeEEEEeCCCcCCHH---------------HHHHHHHHHHhc--CCCCe
Confidence 54221 12222222221 145789999999998532 335666666643 34577
Q ss_pred EEEecCCCCCCChhhhCCCCcceEEEecCCCHHHHHHHHHHHHhcCCCCCCCCCCHHHHHHhCCCCCHHHHHHHHHHHHH
Q 007575 474 VLGATNRSDVLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTTGFTGADLANLVNEAAL 553 (597)
Q Consensus 474 VIaaTNrpd~LD~aLlRpgRFd~~I~v~~Pd~~eR~eILk~~l~~~~~~l~~dvdl~~LA~~t~G~SgaDL~~Lv~eAal 553 (597)
+|++||.++.+++++.+ |+. .+.+++|+.++..++++.++...++.+.++ .++.|+..+.| +.+.+.++++.++.
T Consensus 143 ~i~~~~~~~~l~~~l~s--r~~-~~~~~~l~~~~~~~~l~~~~~~~~~~~~~~-~~~~l~~~~~g-~~r~~~~~l~~~~~ 217 (327)
T 1iqp_A 143 FILSCNYSSKIIEPIQS--RCA-IFRFRPLRDEDIAKRLRYIAENEGLELTEE-GLQAILYIAEG-DMRRAINILQAAAA 217 (327)
T ss_dssp EEEEESCGGGSCHHHHH--TEE-EEECCCCCHHHHHHHHHHHHHTTTCEECHH-HHHHHHHHHTT-CHHHHHHHHHHHHT
T ss_pred EEEEeCCccccCHHHHh--hCc-EEEecCCCHHHHHHHHHHHHHhcCCCCCHH-HHHHHHHHCCC-CHHHHHHHHHHHHh
Confidence 88889999999999988 886 789999999999999999988766655544 47788888765 67777777776553
No 68
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=99.68 E-value=5.2e-16 Score=178.88 Aligned_cols=190 Identities=22% Similarity=0.327 Sum_probs=136.7
Q ss_pred CCcccccccCChHHHHHHHHHHHHhcChhHHhhcCCCCCCceEEeCCCCChHHHHHHHHHHhc----------CCCeeee
Q 007575 327 DTITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEA----------EVPFISC 396 (597)
Q Consensus 327 ~~vtf~dV~G~de~k~~L~eiv~~l~~p~~~~~lg~~~p~gVLL~GPPGTGKT~LArAIA~el----------~~pfi~i 396 (597)
..-++++++|.++.++.+.+++.. +.+.++||+||||||||++|+++|.++ +.+++.+
T Consensus 175 ~~~~ld~iiG~~~~i~~l~~~l~~------------~~~~~vLL~G~pGtGKT~la~~la~~l~~~~~p~~l~~~~~~~~ 242 (758)
T 3pxi_A 175 KEDSLDPVIGRSKEIQRVIEVLSR------------RTKNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVMTL 242 (758)
T ss_dssp TSSCSCCCCCCHHHHHHHHHHHHC------------SSSCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCEECC
T ss_pred hhCCCCCccCchHHHHHHHHHHhC------------CCCCCeEEECCCCCCHHHHHHHHHHHHhcCCCChhhcCCeEEEe
Confidence 345789999999998887777641 345679999999999999999999986 7888888
Q ss_pred chhhhHHHHhhcchHHHHHHHHHHHhcCCeEEEEcCcchhhhhcCCcccccchhHHHHHHHHHHHHhcCCCCCCcEEEEE
Q 007575 397 SASEFVELYVGMGASRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLG 476 (597)
Q Consensus 397 s~sef~~~~vG~~e~~vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~eqtLnqLL~emdg~~~~~~VIVIa 476 (597)
++ ...|.|..+.+++.+|..+....|+||||| +. ....+.|+..|+ ...+.+|+
T Consensus 243 ~~---g~~~~G~~e~~l~~~~~~~~~~~~~iLfiD-----~~--------------~~~~~~L~~~l~----~~~v~~I~ 296 (758)
T 3pxi_A 243 DM---GTKYRGEFEDRLKKVMDEIRQAGNIILFID-----AA--------------IDASNILKPSLA----RGELQCIG 296 (758)
T ss_dssp -------------CTTHHHHHHHHHTCCCCEEEEC-----C----------------------CCCTT----SSSCEEEE
T ss_pred cc---cccccchHHHHHHHHHHHHHhcCCEEEEEc-----Cc--------------hhHHHHHHHHHh----cCCEEEEe
Confidence 87 556788899999999999999999999999 10 012244554444 45689999
Q ss_pred ecCCCC-----CCChhhhCCCCcceEEEecCCCHHHHHHHHHHHHhcC----CCCCCCCCCHHHHHHh-----CCCCCHH
Q 007575 477 ATNRSD-----VLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKK----ELPLAKDIDLGDIASM-----TTGFTGA 542 (597)
Q Consensus 477 aTNrpd-----~LD~aLlRpgRFd~~I~v~~Pd~~eR~eILk~~l~~~----~~~l~~dvdl~~LA~~-----t~G~Sga 542 (597)
+||..+ .+|+++.| ||. .|.|+.|+.+++.+||+.+.... ++.+.++ .+..++.. +.++.+.
T Consensus 297 at~~~~~~~~~~~d~al~r--Rf~-~i~v~~p~~~~~~~il~~~~~~~~~~~~~~i~~~-al~~~~~~s~~~i~~~~~p~ 372 (758)
T 3pxi_A 297 ATTLDEYRKYIEKDAALER--RFQ-PIQVDQPSVDESIQILQGLRDRYEAHHRVSITDD-AIEAAVKLSDRYISDRFLPD 372 (758)
T ss_dssp ECCTTTTHHHHTTCSHHHH--SEE-EEECCCCCHHHHHHHHHHTTTTSGGGSSCSCCHH-HHHHHHHHHHHSSCCSCTTH
T ss_pred CCChHHHHHHhhccHHHHh--hCc-EEEeCCCCHHHHHHHHHHHHHHHHHhcCCCCCHH-HHHHHHHHhhcccccCcCCc
Confidence 999988 79999999 995 69999999999999999876542 2233222 24445443 3466778
Q ss_pred HHHHHHHHHHHHHHhc
Q 007575 543 DLANLVNEAALLAGRL 558 (597)
Q Consensus 543 DL~~Lv~eAal~A~r~ 558 (597)
+...++.+|+..+...
T Consensus 373 ~ai~ll~~a~~~~~~~ 388 (758)
T 3pxi_A 373 KAIDLIDEAGSKVRLR 388 (758)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhh
Confidence 8899999988766544
No 69
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=99.67 E-value=2e-16 Score=158.88 Aligned_cols=206 Identities=21% Similarity=0.201 Sum_probs=125.0
Q ss_pred cccccccCChHHHHHHHHHHHHhcChhHHhhcCCCCCCceEEeCCCCChHHHHHHHHHHhcC---CCeeeechhhhHHH-
Q 007575 329 ITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAE---VPFISCSASEFVEL- 404 (597)
Q Consensus 329 vtf~dV~G~de~k~~L~eiv~~l~~p~~~~~lg~~~p~gVLL~GPPGTGKT~LArAIA~el~---~pfi~is~sef~~~- 404 (597)
.+|++++|.+++...+.+.+..+.. .+.++||+||||||||++|++++..+. .||+.++|+.+...
T Consensus 3 ~~f~~~ig~~~~~~~~~~~~~~~~~----------~~~~vll~G~~GtGKt~la~~i~~~~~~~~~~~~~v~~~~~~~~~ 72 (265)
T 2bjv_A 3 EYKDNLLGEANSFLEVLEQVSHLAP----------LDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCAALNENL 72 (265)
T ss_dssp -------CCCHHHHHHHHHHHHHTT----------SCSCEEEECCTTSCHHHHHHHHHHTSTTTTSCEEEEEGGGSCHHH
T ss_pred cccccceeCCHHHHHHHHHHHHHhC----------CCCCEEEECCCCCcHHHHHHHHHHhcCccCCCeEEEecCCCChhH
Confidence 5799999999998888877765432 246899999999999999999999874 79999999876332
Q ss_pred ----HhhcchHH-------HHHHHHHHHhcCCeEEEEcCcchhhhhcCCcccccchhHHHHHHHHHHHHhcCC-------
Q 007575 405 ----YVGMGASR-------VRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGF------- 466 (597)
Q Consensus 405 ----~vG~~e~~-------vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~eqtLnqLL~emdg~------- 466 (597)
..|..... ....|..+ ..++|||||||.+... ....|+..|+..
T Consensus 73 ~~~~l~g~~~~~~~g~~~~~~~~l~~a---~~~~l~lDEi~~l~~~---------------~q~~Ll~~l~~~~~~~~g~ 134 (265)
T 2bjv_A 73 LDSELFGHEAGAFTGAQKRHPGRFERA---DGGTLFLDELATAPMM---------------VQEKLLRVIEYGELERVGG 134 (265)
T ss_dssp HHHHHHCCC---------CCCCHHHHT---TTSEEEEESGGGSCHH---------------HHHHHHHHHHHCEECCCCC
T ss_pred HHHHhcCCcccccccccccccchhhhc---CCcEEEEechHhcCHH---------------HHHHHHHHHHhCCeecCCC
Confidence 11211000 11223333 3469999999998532 224455555421
Q ss_pred --CCCCcEEEEEecCCC-------CCCChhhhCCCCcceEEEecCCCHHHH----HHHHHHHHh----cCCCCCCCCCC-
Q 007575 467 --DSNSAVIVLGATNRS-------DVLDPALRRPGRFDRVVMVETPDKIGR----EAILKVHVS----KKELPLAKDID- 528 (597)
Q Consensus 467 --~~~~~VIVIaaTNrp-------d~LD~aLlRpgRFd~~I~v~~Pd~~eR----~eILk~~l~----~~~~~l~~dvd- 528 (597)
.....+.||++||.+ ..++++|.+ ||+. +.+..|+..+| ..+++.++. ..+.+....++
T Consensus 135 ~~~~~~~~~iI~atn~~~~~~~~~~~~~~~L~~--Rl~~-~~i~lp~L~~R~~di~~l~~~~l~~~~~~~~~~~~~~~~~ 211 (265)
T 2bjv_A 135 SQPLQVNVRLVCATNADLPAMVNEGTFRADLLD--ALAF-DVVQLPPLRERESDIMLMAEYFAIQMCREIKLPLFPGFTE 211 (265)
T ss_dssp --CEECCCEEEEEESSCHHHHHHHTSSCHHHHH--HHCS-EEEECCCGGGCHHHHHHHHHHHHHHHHHHTTCSSCCCBCH
T ss_pred cccccCCeEEEEecCcCHHHHHHcCCccHHHHH--hhcC-cEEeCCChhhhhHHHHHHHHHHHHHHHHHhCCCcccCcCH
Confidence 112457889999985 247888888 8863 45555555444 344444433 22322101222
Q ss_pred --HHHHHHhCCCCCHHHHHHHHHHHHHHHHhcCCCcccHHHH
Q 007575 529 --LGDIASMTTGFTGADLANLVNEAALLAGRLNKVVVEKIDF 568 (597)
Q Consensus 529 --l~~LA~~t~G~SgaDL~~Lv~eAal~A~r~~~~~It~~d~ 568 (597)
++.|.......+.++|.++++.++..+ ....|+.+|+
T Consensus 212 ~a~~~L~~~~~~gn~reL~~~l~~~~~~~---~~~~i~~~~l 250 (265)
T 2bjv_A 212 RARETLLNYRWPGNIRELKNVVERSVYRH---GTSDYPLDDI 250 (265)
T ss_dssp HHHHHHHHSCCTTHHHHHHHHHHHHHHHH---CCSSSCBCCC
T ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHHhC---CCCcCcHHHc
Confidence 455555554556789999999988776 3345666665
No 70
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=99.67 E-value=1.6e-16 Score=182.95 Aligned_cols=196 Identities=21% Similarity=0.334 Sum_probs=142.2
Q ss_pred ccccCChHHHHHHHHHHHHhcChhHHhhcCC----CCCCceEEeCCCCChHHHHHHHHHHhcCCCeeeechhhhHHH---
Q 007575 332 ADVAGVDEAKEELEEIVEFLRSPDKYIRLGA----RPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFVEL--- 404 (597)
Q Consensus 332 ~dV~G~de~k~~L~eiv~~l~~p~~~~~lg~----~~p~gVLL~GPPGTGKT~LArAIA~el~~pfi~is~sef~~~--- 404 (597)
++++|++++++.+...+.... .|. ++..++||+||||||||++|+++|..++.+|+.++|+++.+.
T Consensus 458 ~~v~g~~~~~~~l~~~i~~~~-------~g~~~~~~p~~~~ll~G~~GtGKT~la~~la~~l~~~~~~i~~s~~~~~~~~ 530 (758)
T 1r6b_X 458 MLVFGQDKAIEALTEAIKMAR-------AGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKALGIELLRFDMSEYMERHTV 530 (758)
T ss_dssp TTSCSCHHHHHHHHHHHHHHH-------TTCSCTTSCSEEEEEECSTTSSHHHHHHHHHHHHTCEEEEEEGGGCSSSSCC
T ss_pred hhccCHHHHHHHHHHHHHHHh-------cccCCCCCCceEEEEECCCCCcHHHHHHHHHHHhcCCEEEEechhhcchhhH
Confidence 358899999988888776432 122 233479999999999999999999999999999999988653
Q ss_pred ---------HhhcchHHHHHHHHHHHhcCCeEEEEcCcchhhhhcCCcccccchhHHHHHHHHHHHHhcCCCC-------
Q 007575 405 ---------YVGMGASRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDS------- 468 (597)
Q Consensus 405 ---------~vG~~e~~vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~eqtLnqLL~emdg~~~------- 468 (597)
|+|..+. ..+....+...++||||||||.+.. .+++.|+..|+...-
T Consensus 531 ~~l~g~~~g~~g~~~~--~~l~~~~~~~~~~vl~lDEi~~~~~---------------~~~~~Ll~~le~~~~~~~~g~~ 593 (758)
T 1r6b_X 531 SRLIGAPPGYVGFDQG--GLLTDAVIKHPHAVLLLDEIEKAHP---------------DVFNILLQVMDNGTLTDNNGRK 593 (758)
T ss_dssp SSSCCCCSCSHHHHHT--THHHHHHHHCSSEEEEEETGGGSCH---------------HHHHHHHHHHHHSEEEETTTEE
T ss_pred hhhcCCCCCCcCcccc--chHHHHHHhCCCcEEEEeCccccCH---------------HHHHHHHHHhcCcEEEcCCCCE
Confidence 3433222 2234444556678999999998642 356777777773210
Q ss_pred --CCcEEEEEecCCCC-------------------------CCChhhhCCCCcceEEEecCCCHHHHHHHHHHHHhcC--
Q 007575 469 --NSAVIVLGATNRSD-------------------------VLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKK-- 519 (597)
Q Consensus 469 --~~~VIVIaaTNrpd-------------------------~LD~aLlRpgRFd~~I~v~~Pd~~eR~eILk~~l~~~-- 519 (597)
-.+++||+|||.+. .++|+|++ |||..|.|++|+.+++.+|++.++.+.
T Consensus 594 ~~~~~~~iI~tsN~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~--R~~~~i~~~~l~~~~~~~i~~~~l~~~~~ 671 (758)
T 1r6b_X 594 ADFRNVVLVMTTNAGVRETERKSIGLIHQDNSTDAMEEIKKIFTPEFRN--RLDNIIWFDHLSTDVIHQVVDKFIVELQV 671 (758)
T ss_dssp EECTTEEEEEEECSSCC-----------------CHHHHHHHSCHHHHT--TCSEEEECCCCCHHHHHHHHHHHHHHHHH
T ss_pred EecCCeEEEEecCcchhhhhhcccCccccchHHHHHHHHHHhcCHHHHh--hCCcceeeCCCCHHHHHHHHHHHHHHHHH
Confidence 14588999999854 57888988 999999999999999999999887632
Q ss_pred -------CCCCCCCCCHHHHHHhC--CCCCHHHHHHHHHHHHHH
Q 007575 520 -------ELPLAKDIDLGDIASMT--TGFTGADLANLVNEAALL 554 (597)
Q Consensus 520 -------~~~l~~dvdl~~LA~~t--~G~SgaDL~~Lv~eAal~ 554 (597)
.+.+.++ .++.|+... ..+..++|.++++.+...
T Consensus 672 ~~~~~~~~~~~~~~-a~~~l~~~~~~~~~g~R~l~~~i~~~~~~ 714 (758)
T 1r6b_X 672 QLDQKGVSLEVSQE-ARNWLAEKGYDRAMGARPMARVIQDNLKK 714 (758)
T ss_dssp HHHHTTEEEEECHH-HHHHHHHHHCBTTTBTTTHHHHHHHHHTH
T ss_pred HHHHCCcEEEeCHH-HHHHHHHhCCCcCCCchHHHHHHHHHHHH
Confidence 1223333 366677654 245578899988887664
No 71
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=99.66 E-value=1.6e-16 Score=148.20 Aligned_cols=152 Identities=26% Similarity=0.361 Sum_probs=110.3
Q ss_pred CcccccccCChHHHHHHHHHHHHhcChhHHhhcCCCCCCceEEeCCCCChHHHHHHHHHHhc----------CCCeeeec
Q 007575 328 TITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEA----------EVPFISCS 397 (597)
Q Consensus 328 ~vtf~dV~G~de~k~~L~eiv~~l~~p~~~~~lg~~~p~gVLL~GPPGTGKT~LArAIA~el----------~~pfi~is 397 (597)
..+|++++|.++..+.+.+.+. . ..+.++||+||||||||++|++++.++ +.+++.++
T Consensus 18 ~~~~~~~~g~~~~~~~l~~~l~---~---------~~~~~vll~G~~G~GKT~la~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (187)
T 2p65_A 18 AGKLDPVIGRDTEIRRAIQILS---R---------RTKNNPILLGDPGVGKTAIVEGLAIKIVQGDVPDSLKGRKLVSLD 85 (187)
T ss_dssp TTCSCCCCSCHHHHHHHHHHHT---S---------SSSCEEEEESCGGGCHHHHHHHHHHHHHTTCSCTTTTTCEEEEEC
T ss_pred ccccchhhcchHHHHHHHHHHh---C---------CCCCceEEECCCCCCHHHHHHHHHHHHHhcCCcchhcCCeEEEEe
Confidence 4568899999987666655542 2 235689999999999999999999986 78889998
Q ss_pred hhhhHHH--HhhcchHHHHHHHHHHHhc-CCeEEEEcCcchhhhhcCCcccccchhHHHHHHHHHHHHhcCCCCCCcEEE
Q 007575 398 ASEFVEL--YVGMGASRVRDLFARAKKE-APSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIV 474 (597)
Q Consensus 398 ~sef~~~--~vG~~e~~vr~lF~~A~~~-aP~ILfIDEIDaL~~~r~~~~~~~~~~e~eqtLnqLL~emdg~~~~~~VIV 474 (597)
+..+... +.+.....+..++..+... .|+||||||+|.+...+... ... ....+.|...++ ...+++
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~iDe~~~l~~~~~~~--~~~----~~~~~~l~~~~~----~~~~~i 155 (187)
T 2p65_A 86 LSSLIAGAKYRGDFEERLKSILKEVQDAEGQVVMFIDEIHTVVGAGAVA--EGA----LDAGNILKPMLA----RGELRC 155 (187)
T ss_dssp HHHHHHHCCSHHHHHHHHHHHHHHHHHTTTSEEEEETTGGGGSSSSSSC--TTS----CCTHHHHHHHHH----TTCSCE
T ss_pred HHHhhcCCCchhHHHHHHHHHHHHHHhcCCceEEEEeCHHHhccccccc--ccc----hHHHHHHHHHHh----cCCeeE
Confidence 8877532 4455566777888777665 68899999999997543210 000 112344444444 245788
Q ss_pred EEecCCCC-----CCChhhhCCCCcceEEEecCCC
Q 007575 475 LGATNRSD-----VLDPALRRPGRFDRVVMVETPD 504 (597)
Q Consensus 475 IaaTNrpd-----~LD~aLlRpgRFd~~I~v~~Pd 504 (597)
|++||.++ .+++++.+ ||+ .+.++.|+
T Consensus 156 i~~~~~~~~~~~~~~~~~l~~--R~~-~i~i~~p~ 187 (187)
T 2p65_A 156 IGATTVSEYRQFIEKDKALER--RFQ-QILVEQPS 187 (187)
T ss_dssp EEEECHHHHHHHTTTCHHHHH--HEE-EEECCSCC
T ss_pred EEecCHHHHHHHHhccHHHHH--hcC-cccCCCCC
Confidence 89998875 68999999 998 58998885
No 72
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=99.65 E-value=1.1e-16 Score=176.59 Aligned_cols=209 Identities=17% Similarity=0.157 Sum_probs=134.9
Q ss_pred cccCChHHHHHHHHHHHHhcChhHHhhcCCCCCCceEEeCCCCChHHHHHHHHHHhcC--CCeeeechh-----hhHHHH
Q 007575 333 DVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAE--VPFISCSAS-----EFVELY 405 (597)
Q Consensus 333 dV~G~de~k~~L~eiv~~l~~p~~~~~lg~~~p~gVLL~GPPGTGKT~LArAIA~el~--~pfi~is~s-----ef~~~~ 405 (597)
.++|.+++++.+...+.. ..+|||+||||||||+||+++|..++ .+|..+.+. ++.+.+
T Consensus 23 ~ivGq~~~i~~l~~al~~--------------~~~VLL~GpPGtGKT~LAraLa~~l~~~~~f~~~~~~~~t~~dL~G~~ 88 (500)
T 3nbx_X 23 GLYERSHAIRLCLLAALS--------------GESVFLLGPPGIAKSLIARRLKFAFQNARAFEYLMTRFSTPEEVFGPL 88 (500)
T ss_dssp TCSSCHHHHHHHHHHHHH--------------TCEEEEECCSSSSHHHHHHHGGGGBSSCCEEEEECCTTCCHHHHHCCB
T ss_pred hhHHHHHHHHHHHHHHhc--------------CCeeEeecCchHHHHHHHHHHHHHHhhhhHHHHHHHhcCCHHHhcCcc
Confidence 478999988776655431 24799999999999999999999884 355554443 222211
Q ss_pred hhcchHHHHHHHHHHHhc---CCeEEEEcCcchhhhhcCCcccccchhHHHHHHHHHHHHhcCC---------CCCCcEE
Q 007575 406 VGMGASRVRDLFARAKKE---APSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGF---------DSNSAVI 473 (597)
Q Consensus 406 vG~~e~~vr~lF~~A~~~---aP~ILfIDEIDaL~~~r~~~~~~~~~~e~eqtLnqLL~emdg~---------~~~~~VI 473 (597)
.+..... ...|..+..+ .++|||||||+.+.. .+.+.|+..|+.. ..+.. +
T Consensus 89 ~~~~~~~-~g~~~~~~~g~l~~~~IL~IDEI~r~~~---------------~~q~~LL~~lee~~v~i~G~~~~~~~~-~ 151 (500)
T 3nbx_X 89 SIQALKD-EGRYERLTSGYLPEAEIVFLDEIWKAGP---------------AILNTLLTAINERQFRNGAHVEKIPMR-L 151 (500)
T ss_dssp C-----------CBCCTTSGGGCSEEEEESGGGCCH---------------HHHHHHHHHHHSSEEECSSSEEECCCC-E
T ss_pred cHHHHhh-chhHHhhhccCCCcceeeeHHhHhhhcH---------------HHHHHHHHHHHHHhccCCCCcCCcchh-h
Confidence 1111111 2223322222 467999999986542 3557788877532 11223 4
Q ss_pred EEEecCCCC---CCChhhhCCCCcceEEEecCCCH-HHHHHHHHHHHhcC-----------------------CCCCCCC
Q 007575 474 VLGATNRSD---VLDPALRRPGRFDRVVMVETPDK-IGREAILKVHVSKK-----------------------ELPLAKD 526 (597)
Q Consensus 474 VIaaTNrpd---~LD~aLlRpgRFd~~I~v~~Pd~-~eR~eILk~~l~~~-----------------------~~~l~~d 526 (597)
+|+|||... .+.+++++ ||...+.+++|+. +++.+|++.+.... ++.+.++
T Consensus 152 iI~ATN~lpe~~~~~~aLld--RF~~~i~v~~p~~~ee~~~IL~~~~~~~~~~~~~~~~~~~e~l~~~~~~~~~v~v~d~ 229 (500)
T 3nbx_X 152 LVAASNELPEADSSLEALYD--RMLIRLWLDKVQDKANFRSMLTSQQDENDNPVPDALQVTDEEYERWQKEIGEITLPDH 229 (500)
T ss_dssp EEEEESSCCCTTCTTHHHHT--TCCEEEECCSCCCHHHHHHHHTCCCCTTSCCSCTTTSBCHHHHHHHHHHHTTCBCCHH
T ss_pred hhhccccCCCccccHHHHHH--HHHHHHHHHHhhhhhhHHHHHhcccccCCCCCCccceecHHHHHHHHhcCCcccCchH
Confidence 567777542 24569999 9999999999987 77889988764321 1122222
Q ss_pred CCHHHHHHhC---------CCCCHHHHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHh
Q 007575 527 IDLGDIASMT---------TGFTGADLANLVNEAALLAGRLNKVVVEKIDFIHAVERSI 576 (597)
Q Consensus 527 vdl~~LA~~t---------~G~SgaDL~~Lv~eAal~A~r~~~~~It~~d~~~Al~~v~ 576 (597)
+ ++.++... .|.|++.+..+++.|...|...++..|+.+|+. ++..++
T Consensus 230 v-~e~i~~l~~~lr~~r~~~~iS~R~~~~llr~A~A~A~l~gr~~Vt~eDv~-~a~~vL 286 (500)
T 3nbx_X 230 V-FELIFMLRQQLDKLPDAPYVSDRRWKKAIRLLQASAFFSGRSAVAPVDLI-LLKDCL 286 (500)
T ss_dssp H-HHHHHHHHHHHHHCSSSCCCCHHHHHHHHHHHHHHHHHTTCSBCCGGGGG-GGGGTS
T ss_pred H-HHHHHHHHHHhhcCCCCCccchhHHHHHHHHHHHHHhhcCCccccchHHH-HHHhhh
Confidence 1 34444332 578999999999999999999999999999987 544444
No 73
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.63 E-value=2.2e-15 Score=157.16 Aligned_cols=208 Identities=19% Similarity=0.223 Sum_probs=142.5
Q ss_pred cCCCCcccccccCChHHHHHHHHHHHHhcChhHHhhcCCCCCCceEEeCCCCChHHHHHHHHHHhcCC-----Ceeeech
Q 007575 324 EQGDTITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEV-----PFISCSA 398 (597)
Q Consensus 324 ~~~~~vtf~dV~G~de~k~~L~eiv~~l~~p~~~~~lg~~~p~gVLL~GPPGTGKT~LArAIA~el~~-----pfi~is~ 398 (597)
+...+.+|++++|++++++.|...+.. .+.|. +||+||||||||++|+++|+++.. .++.+++
T Consensus 17 ~k~rp~~~~~~~g~~~~~~~L~~~i~~-----------g~~~~-~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~ 84 (340)
T 1sxj_C 17 EKYRPETLDEVYGQNEVITTVRKFVDE-----------GKLPH-LLFYGPPGTGKTSTIVALAREIYGKNYSNMVLELNA 84 (340)
T ss_dssp HHTCCSSGGGCCSCHHHHHHHHHHHHT-----------TCCCC-EEEECSSSSSHHHHHHHHHHHHHTTSHHHHEEEECT
T ss_pred HHhCCCcHHHhcCcHHHHHHHHHHHhc-----------CCCce-EEEECCCCCCHHHHHHHHHHHHcCCCccceEEEEcC
Confidence 344567899999999998888877752 23343 999999999999999999998643 3455555
Q ss_pred hhhHHHHhhcchHHHHHHHHHHHh------cCCeEEEEcCcchhhhhcCCcccccchhHHHHHHHHHHHHhcCCCCCCcE
Q 007575 399 SEFVELYVGMGASRVRDLFARAKK------EAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAV 472 (597)
Q Consensus 399 sef~~~~vG~~e~~vr~lF~~A~~------~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~eqtLnqLL~emdg~~~~~~V 472 (597)
++. .+...+++.+..... ..+.|++|||+|.+... ..+.|+..|+... ..+
T Consensus 85 ~~~------~~~~~ir~~i~~~~~~~~~~~~~~~viiiDe~~~l~~~---------------~~~~L~~~le~~~--~~~ 141 (340)
T 1sxj_C 85 SDD------RGIDVVRNQIKDFASTRQIFSKGFKLIILDEADAMTNA---------------AQNALRRVIERYT--KNT 141 (340)
T ss_dssp TSC------CSHHHHHTHHHHHHHBCCSSSCSCEEEEETTGGGSCHH---------------HHHHHHHHHHHTT--TTE
T ss_pred ccc------ccHHHHHHHHHHHHhhcccCCCCceEEEEeCCCCCCHH---------------HHHHHHHHHhcCC--CCe
Confidence 432 122344444443331 23689999999988532 2356677776433 445
Q ss_pred EEEEecCCCCCCChhhhCCCCcceEEEecCCCHHHHHHHHHHHHhcCCCCCCCCCCHHHHHHhCCCCCHHHHHHHHHHHH
Q 007575 473 IVLGATNRSDVLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTTGFTGADLANLVNEAA 552 (597)
Q Consensus 473 IVIaaTNrpd~LD~aLlRpgRFd~~I~v~~Pd~~eR~eILk~~l~~~~~~l~~dvdl~~LA~~t~G~SgaDL~~Lv~eAa 552 (597)
.+|.+||.++.+.+++.+ |+. .+.+.+++.++..+++...+...++.+.++ .+..++..+.| ..+.+.++++.++
T Consensus 142 ~~il~~n~~~~i~~~i~s--R~~-~~~~~~l~~~~~~~~l~~~~~~~~~~i~~~-~~~~i~~~s~G-~~r~~~~~l~~~~ 216 (340)
T 1sxj_C 142 RFCVLANYAHKLTPALLS--QCT-RFRFQPLPQEAIERRIANVLVHEKLKLSPN-AEKALIELSNG-DMRRVLNVLQSCK 216 (340)
T ss_dssp EEEEEESCGGGSCHHHHT--TSE-EEECCCCCHHHHHHHHHHHHHTTTCCBCHH-HHHHHHHHHTT-CHHHHHHHTTTTT
T ss_pred EEEEEecCccccchhHHh--hce-eEeccCCCHHHHHHHHHHHHHHcCCCCCHH-HHHHHHHHcCC-CHHHHHHHHHHHH
Confidence 677788999999999999 875 789999999999999998887666666544 36777777654 4555555655544
Q ss_pred HHHHhcCCCcccHHHHHHH
Q 007575 553 LLAGRLNKVVVEKIDFIHA 571 (597)
Q Consensus 553 l~A~r~~~~~It~~d~~~A 571 (597)
..+...+...|+.+++.++
T Consensus 217 ~~~~~~~~~~it~~~v~~~ 235 (340)
T 1sxj_C 217 ATLDNPDEDEISDDVIYEC 235 (340)
T ss_dssp TTTCSSSCCCBCHHHHHHH
T ss_pred HhcCCcccccccHHHHHHH
Confidence 3332222335777776554
No 74
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=99.63 E-value=3.1e-16 Score=162.27 Aligned_cols=204 Identities=20% Similarity=0.284 Sum_probs=133.3
Q ss_pred ccccCChHHHHHHHHHHHHhcChhHHhhcCCCCCCceEEeCCCCChHHHHHHHHHHhc---CCCeeeechhhhHHH----
Q 007575 332 ADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEA---EVPFISCSASEFVEL---- 404 (597)
Q Consensus 332 ~dV~G~de~k~~L~eiv~~l~~p~~~~~lg~~~p~gVLL~GPPGTGKT~LArAIA~el---~~pfi~is~sef~~~---- 404 (597)
++++|.+++.+.+.+.+..+. ..+.+|||+||||||||++|++++... +.||+.++|+.+...
T Consensus 2 ~~iig~s~~~~~~~~~~~~~a----------~~~~~vLi~Ge~GtGKt~lAr~i~~~~~~~~~~~v~v~~~~~~~~l~~~ 71 (304)
T 1ojl_A 2 SHMIGSSPAMQHLLNEIAMVA----------PSDATVLIHGDSGTGKELVARALHACSARSDRPLVTLNCAALNESLLES 71 (304)
T ss_dssp -CCCCCSHHHHHHHHHHHHHC----------STTSCEEEESCTTSCHHHHHHHHHHHSSCSSSCCCEEECSSCCHHHHHH
T ss_pred CCcEECCHHHHHHHHHHHHHh----------CCCCcEEEECCCCchHHHHHHHHHHhCcccCCCeEEEeCCCCChHHHHH
Confidence 368999999888888877543 235689999999999999999999965 689999999866432
Q ss_pred -Hhhcch-------HHHHHHHHHHHhcCCeEEEEcCcchhhhhcCCcccccchhHHHHHHHHHHHHhcCCC---------
Q 007575 405 -YVGMGA-------SRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFD--------- 467 (597)
Q Consensus 405 -~vG~~e-------~~vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~eqtLnqLL~emdg~~--------- 467 (597)
..|... ......|+.+. .++|||||||.+... ....|+..|+...
T Consensus 72 ~lfg~~~g~~tg~~~~~~g~~~~a~---~g~L~LDEi~~l~~~---------------~q~~Ll~~l~~~~~~~~g~~~~ 133 (304)
T 1ojl_A 72 ELFGHEKGAFTGADKRREGRFVEAD---GGTLFLDEIGDISPL---------------MQVRLLRAIQEREVQRVGSNQT 133 (304)
T ss_dssp HHTCCCSSCCC---CCCCCHHHHHT---TSEEEEESCTTCCHH---------------HHHHHHHHHHSSBCCBTTBCCC
T ss_pred HhcCccccccCchhhhhcCHHHhcC---CCEEEEeccccCCHH---------------HHHHHHHHHhcCEeeecCCccc
Confidence 122110 01234455554 359999999998532 2345666665321
Q ss_pred CCCcEEEEEecCCC-------CCCChhhhCCCCcceEEEecCCCHHHHH----HHHHHHHhc----CC---CCCCCCCCH
Q 007575 468 SNSAVIVLGATNRS-------DVLDPALRRPGRFDRVVMVETPDKIGRE----AILKVHVSK----KE---LPLAKDIDL 529 (597)
Q Consensus 468 ~~~~VIVIaaTNrp-------d~LD~aLlRpgRFd~~I~v~~Pd~~eR~----eILk~~l~~----~~---~~l~~dvdl 529 (597)
....+.||++||.+ ..++++|.. ||+ .+.+..|+..+|. .+++.++.+ .+ ..+.++ .+
T Consensus 134 ~~~~~riI~atn~~l~~~v~~g~fr~~L~~--Rl~-~~~i~lPpL~eR~edi~~l~~~~l~~~~~~~~~~~~~~s~~-a~ 209 (304)
T 1ojl_A 134 ISVDVRLIAATHRDLAEEVSAGRFRQDLYY--RLN-VVAIEMPSLRQRREDIPLLADHFLRRFAERNRKVVKGFTPQ-AM 209 (304)
T ss_dssp CBCCCEEEEEESSCHHHHHHHTSSCHHHHH--HHS-SEEEECCCSGGGGGGHHHHHHHHHHHHHHHTTCCCCCBCHH-HH
T ss_pred ccCCeEEEEecCccHHHHHHhCCcHHHHHh--hcC-eeEEeccCHHHhHhhHHHHHHHHHHHHHHHhccCccCCCHH-HH
Confidence 12458899999986 245666766 665 5566666655543 355554432 12 122222 26
Q ss_pred HHHHHhCCCCCHHHHHHHHHHHHHHHHhcCCCcccHHHHHH
Q 007575 530 GDIASMTTGFTGADLANLVNEAALLAGRLNKVVVEKIDFIH 570 (597)
Q Consensus 530 ~~LA~~t~G~SgaDL~~Lv~eAal~A~r~~~~~It~~d~~~ 570 (597)
+.|..+....+.++|.+++..|+..+ ....|+.+|+..
T Consensus 210 ~~L~~~~wpGnvReL~~~l~~~~~~~---~~~~i~~~~l~~ 247 (304)
T 1ojl_A 210 DLLIHYDWPGNIRELENAIERAVVLL---TGEYISERELPL 247 (304)
T ss_dssp HHHHHCCCSSHHHHHHHHHHHHHHHC---CSSSBCGGGSCG
T ss_pred HHHHcCCCCCCHHHHHHHHHHHHHhC---CCCcccHHhhhh
Confidence 66777765557799999999998776 334676666643
No 75
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.63 E-value=4e-15 Score=154.72 Aligned_cols=193 Identities=16% Similarity=0.207 Sum_probs=134.7
Q ss_pred CCCcccccccCChHHHHHHHHHHHHhcChhHHhhcCCCCCCceEEeCCCCChHHHHHHHHHHhcCC--------------
Q 007575 326 GDTITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEV-------------- 391 (597)
Q Consensus 326 ~~~vtf~dV~G~de~k~~L~eiv~~l~~p~~~~~lg~~~p~gVLL~GPPGTGKT~LArAIA~el~~-------------- 391 (597)
..+.+|++++|++++++.|...+. . ..+.|. ++|+||+|||||++++++++++..
T Consensus 8 yrP~~~~~~vg~~~~~~~l~~~~~--~--------~~~~~~-~ll~Gp~G~GKTtl~~~la~~l~~~~~g~i~~~~~~~~ 76 (354)
T 1sxj_E 8 YRPKSLNALSHNEELTNFLKSLSD--Q--------PRDLPH-LLLYGPNGTGKKTRCMALLESIFGPGVYRLKIDVRQFV 76 (354)
T ss_dssp TCCCSGGGCCSCHHHHHHHHTTTT--C--------TTCCCC-EEEECSTTSSHHHHHHTHHHHHSCTTCCC---------
T ss_pred cCCCCHHHhcCCHHHHHHHHHHHh--h--------CCCCCe-EEEECCCCCCHHHHHHHHHHHHcCCCCCeEEecceeec
Confidence 345679999999998887766651 1 123455 999999999999999999996421
Q ss_pred ---------------CeeeechhhhHHHHhhcchHHHHHHHHHHH--------------hcCCeEEEEcCcchhhhhcCC
Q 007575 392 ---------------PFISCSASEFVELYVGMGASRVRDLFARAK--------------KEAPSIIFIDEIDAVAKSRDG 442 (597)
Q Consensus 392 ---------------pfi~is~sef~~~~vG~~e~~vr~lF~~A~--------------~~aP~ILfIDEIDaL~~~r~~ 442 (597)
+++.++.++.. ......+++.++.+. ...|.||+|||+|.+..
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~i~~~~~~~~~~~~~~ls~l~~~~~vlilDE~~~L~~---- 148 (354)
T 1sxj_E 77 TASNRKLELNVVSSPYHLEITPSDMG----NNDRIVIQELLKEVAQMEQVDFQDSKDGLAHRYKCVIINEANSLTK---- 148 (354)
T ss_dssp ---------CCEECSSEEEECCC--------CCHHHHHHHHHHHTTTTC------------CCEEEEEECTTSSCH----
T ss_pred ccccccceeeeecccceEEecHhhcC----CcchHHHHHHHHHHHHhccccccccccccCCCCeEEEEeCccccCH----
Confidence 12223222110 001113555555442 23577999999998632
Q ss_pred cccccchhHHHHHHHHHHHHhcCCCCCCcEEEEEecCCCCCCChhhhCCCCcceEEEecCCCHHHHHHHHHHHHhcCCCC
Q 007575 443 RFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATNRSDVLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELP 522 (597)
Q Consensus 443 ~~~~~~~~e~eqtLnqLL~emdg~~~~~~VIVIaaTNrpd~LD~aLlRpgRFd~~I~v~~Pd~~eR~eILk~~l~~~~~~ 522 (597)
...+.|+..|+... .++.+|.+||.++.+.+++.+ |+ ..+.+++|+.++..++++..+.+.++.
T Consensus 149 -----------~~~~~L~~~le~~~--~~~~~Il~t~~~~~l~~~l~s--R~-~~~~~~~~~~~~~~~~l~~~~~~~~~~ 212 (354)
T 1sxj_E 149 -----------DAQAALRRTMEKYS--KNIRLIMVCDSMSPIIAPIKS--QC-LLIRCPAPSDSEISTILSDVVTNERIQ 212 (354)
T ss_dssp -----------HHHHHHHHHHHHST--TTEEEEEEESCSCSSCHHHHT--TS-EEEECCCCCHHHHHHHHHHHHHHHTCE
T ss_pred -----------HHHHHHHHHHHhhc--CCCEEEEEeCCHHHHHHHHHh--hc-eEEecCCcCHHHHHHHHHHHHHHcCCC
Confidence 23355666666433 357788888999999999998 88 689999999999999999998877766
Q ss_pred CC-CCCCHHHHHHhCCCCCHHHHHHHHHHHHHHH
Q 007575 523 LA-KDIDLGDIASMTTGFTGADLANLVNEAALLA 555 (597)
Q Consensus 523 l~-~dvdl~~LA~~t~G~SgaDL~~Lv~eAal~A 555 (597)
+. ++ .++.|+..+.| +.+++.++++.++..+
T Consensus 213 ~~~~~-~l~~i~~~~~G-~~r~a~~~l~~~~~~~ 244 (354)
T 1sxj_E 213 LETKD-ILKRIAQASNG-NLRVSLLMLESMALNN 244 (354)
T ss_dssp ECCSH-HHHHHHHHHTT-CHHHHHHHHTHHHHTT
T ss_pred CCcHH-HHHHHHHHcCC-CHHHHHHHHHHHHHhC
Confidence 65 44 47888888865 6788888888777654
No 76
>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}
Probab=99.62 E-value=2.4e-16 Score=177.55 Aligned_cols=222 Identities=19% Similarity=0.165 Sum_probs=143.2
Q ss_pred ccccCChHHHHHHHHHHHHhcChhHHhhcCCCCCCceEEeCCCCChHHHHHHHHHHhcCCCeeee----chhhhHHH---
Q 007575 332 ADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISC----SASEFVEL--- 404 (597)
Q Consensus 332 ~dV~G~de~k~~L~eiv~~l~~p~~~~~lg~~~p~gVLL~GPPGTGKT~LArAIA~el~~pfi~i----s~sef~~~--- 404 (597)
..++|++++|+.+...+..-. +........+...+|||+||||||||+||+++|..++.+++.. ++.++...
T Consensus 295 ~~I~G~e~vk~al~~~l~~g~-~~~~~~~~~r~~~~vLL~GppGtGKT~LAr~la~~~~r~~~~~~~~~~~~~l~~~~~~ 373 (595)
T 3f9v_A 295 PSIYGHWELKEALALALFGGV-PKVLEDTRIRGDIHILIIGDPGTAKSQMLQFISRVAPRAVYTTGKGSTAAGLTAAVVR 373 (595)
T ss_dssp STTSCCHHHHHHHTTTTTCCC-CEETTTTEECCSCCEEEEESSCCTHHHHHHSSSTTCSCEECCCTTCSTTTTSEEECSS
T ss_pred chhcChHHHHHHHHHHHhCCC-cccccCCCcCCCcceEEECCCchHHHHHHHHHHHhCCCceecCCCccccccccceeee
Confidence 358999998877633221100 0000001123344899999999999999999999987666543 22222111
Q ss_pred --HhhcchHHHHHHHHHHHhcCCeEEEEcCcchhhhhcCCcccccchhHHHHHHHHHHHHhcCCC-----------CCCc
Q 007575 405 --YVGMGASRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFD-----------SNSA 471 (597)
Q Consensus 405 --~vG~~e~~vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~eqtLnqLL~emdg~~-----------~~~~ 471 (597)
+.|... .....+..|. .+||||||||.+... ..+.|+..|+.-. .+.+
T Consensus 374 ~~~~g~~~-~~~G~l~~A~---~gil~IDEid~l~~~---------------~q~~Ll~~le~~~i~i~~~g~~~~~~~~ 434 (595)
T 3f9v_A 374 EKGTGEYY-LEAGALVLAD---GGIAVIDEIDKMRDE---------------DRVAIHEAMEQQTVSIAKAGIVAKLNAR 434 (595)
T ss_dssp GGGTSSCS-EEECHHHHHS---SSEECCTTTTCCCSH---------------HHHHHHHHHHSSSEEEESSSSEEEECCC
T ss_pred cccccccc-ccCCeeEecC---CCcEEeehhhhCCHh---------------HhhhhHHHHhCCEEEEecCCcEEEecCc
Confidence 111100 0012233342 359999999997532 3356777776322 1356
Q ss_pred EEEEEecCCCC-------------CCChhhhCCCCcce-EEEecCCCHHHHHHHHHHHHhcCCC----------------
Q 007575 472 VIVLGATNRSD-------------VLDPALRRPGRFDR-VVMVETPDKIGREAILKVHVSKKEL---------------- 521 (597)
Q Consensus 472 VIVIaaTNrpd-------------~LD~aLlRpgRFd~-~I~v~~Pd~~eR~eILk~~l~~~~~---------------- 521 (597)
+.||||||++. .|+++|++ |||. .+..+.|+.+ ...|.++.+.....
T Consensus 435 ~~vIaatNp~~G~~~~~~~~~~ni~l~~aLl~--RFDl~~~~~~~~~~e-~~~i~~~il~~~~~~~~~~~l~~~~l~~~i 511 (595)
T 3f9v_A 435 AAVIAAGNPKFGRYISERPVSDNINLPPTILS--RFDLIFILKDQPGEQ-DRELANYILDVHSGKSTKNIIDIDTLRKYI 511 (595)
T ss_dssp CEEEEEECCTTCCSCTTSCSCTTTCSCSSSGG--GCSCCEEECCTTHHH-HHHHHHHHHTTTCCCSSSSTTCCTTTHHHH
T ss_pred eEEEEEcCCcCCccCcccCchhccCCCHHHHh--hCeEEEEeCCCCCHH-HHHHHHHHHHHhhccccccCCCHHHHHHHH
Confidence 88999999986 89999999 9985 4455667777 77777766653210
Q ss_pred ---------CCCCCCCHHHHHHh--------------CCCCCHHHHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHhc
Q 007575 522 ---------PLAKDIDLGDIASM--------------TTGFTGADLANLVNEAALLAGRLNKVVVEKIDFIHAVERSIA 577 (597)
Q Consensus 522 ---------~l~~dvdl~~LA~~--------------t~G~SgaDL~~Lv~eAal~A~r~~~~~It~~d~~~Al~~v~~ 577 (597)
.+.++ ..+.|... ..+.|.+.+.++++.|...|..++...|+.+|+.+|++-+..
T Consensus 512 ~~ar~~~~p~ls~e-a~~~l~~~y~~lR~~~~~~~~~~~~~s~R~l~~lirla~a~A~l~~~~~V~~~dv~~Ai~l~~~ 589 (595)
T 3f9v_A 512 AYARKYVTPKITSE-AKNLITDFFVEMRKKSSETPDSPILITPRQLEALIRISEAYAKMALKAEVTREDAERAINIMRL 589 (595)
T ss_dssp HHHHHHHCCCCCCC-THHHHHHHHTTSSCSCCBCSSSCBCSSTTTTTHHHHHHHHHHHTTSSCCSSHHHHHHHHHHHHH
T ss_pred HHHHHhCCCCCCHH-HHHHHHHHHHHHHHhhccCCCccccccHHHHHHHHHHHHHHHHHhCcCCCCHHHHHHHHHHHHH
Confidence 12221 23444443 357889999999999999999999999999999999876543
No 77
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=99.59 E-value=1.6e-15 Score=177.13 Aligned_cols=203 Identities=24% Similarity=0.312 Sum_probs=142.8
Q ss_pred cccccCChHHHHHHHHHHHHhcChhHHhhcCCCCCCceEEeCCCCChHHHHHHHHHHhc---CCCeeeechhhhHHH---
Q 007575 331 FADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEA---EVPFISCSASEFVEL--- 404 (597)
Q Consensus 331 f~dV~G~de~k~~L~eiv~~l~~p~~~~~lg~~~p~gVLL~GPPGTGKT~LArAIA~el---~~pfi~is~sef~~~--- 404 (597)
+++|+|++++++.+...+........ -..++..++||+||||||||++|++++..+ +.+|+.++|+++.+.
T Consensus 557 ~~~viG~~~a~~~l~~~i~~~~~g~~---~~~~p~~~vLl~Gp~GtGKT~lA~~la~~~~~~~~~~i~i~~~~~~~~~~~ 633 (854)
T 1qvr_A 557 HKRVVGQDEAIRAVADAIRRARAGLK---DPNRPIGSFLFLGPTGVGKTELAKTLAATLFDTEEAMIRIDMTEYMEKHAV 633 (854)
T ss_dssp HHHSCSCHHHHHHHHHHHHHHGGGCS---CSSSCSEEEEEBSCSSSSHHHHHHHHHHHHHSSGGGEEEECTTTCCSSGGG
T ss_pred hcccCCcHHHHHHHHHHHHHHhcccC---CCCCCceEEEEECCCCCCHHHHHHHHHHHhcCCCCcEEEEechhccchhHH
Confidence 35789999999999888875432100 001223479999999999999999999988 789999999877543
Q ss_pred ---------HhhcchHHHHHHHHHHHhcCCeEEEEcCcchhhhhcCCcccccchhHHHHHHHHHHHHhcCCC--------
Q 007575 405 ---------YVGMGASRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFD-------- 467 (597)
Q Consensus 405 ---------~vG~~e~~vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~eqtLnqLL~emdg~~-------- 467 (597)
|+|... ...+....+...++||||||||.+. ..+++.|+..|+.-.
T Consensus 634 s~l~g~~~~~~G~~~--~g~l~~~~~~~~~~vl~lDEi~~l~---------------~~~~~~Ll~~l~~~~~~~~~g~~ 696 (854)
T 1qvr_A 634 SRLIGAPPGYVGYEE--GGQLTEAVRRRPYSVILFDEIEKAH---------------PDVFNILLQILDDGRLTDSHGRT 696 (854)
T ss_dssp GGC----------------CHHHHHHHCSSEEEEESSGGGSC---------------HHHHHHHHHHHTTTEECCSSSCC
T ss_pred HHHcCCCCCCcCccc--cchHHHHHHhCCCeEEEEecccccC---------------HHHHHHHHHHhccCceECCCCCE
Confidence 222221 2234444455567899999999864 246688888887431
Q ss_pred -CCCcEEEEEecCCC--------------------------CCCChhhhCCCCcceEEEecCCCHHHHHHHHHHHHhcC-
Q 007575 468 -SNSAVIVLGATNRS--------------------------DVLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKK- 519 (597)
Q Consensus 468 -~~~~VIVIaaTNrp--------------------------d~LD~aLlRpgRFd~~I~v~~Pd~~eR~eILk~~l~~~- 519 (597)
.-.+++||+|||.. ..+.|+|+. ||+..+.+.+|+.++...|++.++.+.
T Consensus 697 vd~~~~iiI~tsn~~~~~~~~~~~~~~~~~~l~~~v~~~~~~~f~~~l~~--Rl~~~i~~~pl~~edi~~i~~~~l~~~~ 774 (854)
T 1qvr_A 697 VDFRNTVIILTSNLGSPLILEGLQKGWPYERIRDEVFKVLQQHFRPEFLN--RLDEIVVFRPLTKEQIRQIVEIQLSYLR 774 (854)
T ss_dssp EECTTEEEEEECCTTHHHHHHHHHTTCCHHHHHHHHHHHHHTTSCHHHHH--TCSBCCBCCCCCHHHHHHHHHHHHHHHH
T ss_pred eccCCeEEEEecCcChHHHhhhcccccchHHHHHHHHHHHHhhCCHHHHH--hcCeEEeCCCCCHHHHHHHHHHHHHHHH
Confidence 11368899999972 346788887 999999999999999999998887631
Q ss_pred --------CCCCCCCCCHHHHHHhCC--CCCHHHHHHHHHHHHHHHH
Q 007575 520 --------ELPLAKDIDLGDIASMTT--GFTGADLANLVNEAALLAG 556 (597)
Q Consensus 520 --------~~~l~~dvdl~~LA~~t~--G~SgaDL~~Lv~eAal~A~ 556 (597)
.+.+.++ .++.|+.... .+..++|.++|+++...+.
T Consensus 775 ~~~~~~~~~~~~~~~-a~~~L~~~~~~~~gn~R~L~~~i~~~~~~~~ 820 (854)
T 1qvr_A 775 ARLAEKRISLELTEA-AKDFLAERGYDPVFGARPLRRVIQRELETPL 820 (854)
T ss_dssp HHHHTTTCEEEECHH-HHHHHHHHHCBTTTBTSTHHHHHHHHTHHHH
T ss_pred HHHHhCCceEEECHH-HHHHHHHcCCCCCCChHHHHHHHHHHHHHHH
Confidence 1223333 3677777765 5778999999998876553
No 78
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=99.58 E-value=3.8e-14 Score=149.55 Aligned_cols=229 Identities=16% Similarity=0.125 Sum_probs=151.6
Q ss_pred cccccccCChHHHHHHHHHH-HHhcChhHHhhcCCCCCCceEE--eCCCCChHHHHHHHHHHhc---------CCCeeee
Q 007575 329 ITFADVAGVDEAKEELEEIV-EFLRSPDKYIRLGARPPRGVLL--VGLPGTGKTLLAKAVAGEA---------EVPFISC 396 (597)
Q Consensus 329 vtf~dV~G~de~k~~L~eiv-~~l~~p~~~~~lg~~~p~gVLL--~GPPGTGKT~LArAIA~el---------~~pfi~i 396 (597)
...++++|.++..+.|.+.+ ...... ....+..++| +||||+|||+|++++++++ +.+++.+
T Consensus 19 ~~p~~l~gR~~el~~l~~~l~~~~~~~------~~~~~~~~li~i~G~~G~GKT~L~~~~~~~~~~~~~~~~~~~~~~~~ 92 (412)
T 1w5s_A 19 YIPPELRVRRGEAEALARIYLNRLLSG------AGLSDVNMIYGSIGRVGIGKTTLAKFTVKRVSEAAAKEGLTVKQAYV 92 (412)
T ss_dssp CCCSSCSSSCHHHHHHHHHHHHHHHTS------SCBCCEEEEEECTTCCSSSHHHHHHHHHHHHHHHHHHTTCCEEEEEE
T ss_pred cCCCCCCChHHHHHHHHHHHhHHHhcC------CCCCCCEEEEeCcCcCCCCHHHHHHHHHHHHHHHHhccCCceeEEEE
Confidence 34478999999988888887 543211 0023557999 9999999999999999876 5667777
Q ss_pred chhh------hHHHH---hh-------cchHH-HHHHHHHHH-hcCCeEEEEcCcchhhhhcCCcccccchhHHHHHHHH
Q 007575 397 SASE------FVELY---VG-------MGASR-VRDLFARAK-KEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQ 458 (597)
Q Consensus 397 s~se------f~~~~---vG-------~~e~~-vr~lF~~A~-~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~eqtLnq 458 (597)
+|.. +.... .| ..... ...+..... ...|.||+|||+|.+...... . ...+..
T Consensus 93 ~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~llvlDe~~~l~~~~~~-----~----~~~l~~ 163 (412)
T 1w5s_A 93 NAFNAPNLYTILSLIVRQTGYPIQVRGAPALDILKALVDNLYVENHYLLVILDEFQSMLSSPRI-----A----AEDLYT 163 (412)
T ss_dssp EGGGCCSHHHHHHHHHHHHTCCCCCTTCCHHHHHHHHHHHHHHHTCEEEEEEESTHHHHSCTTS-----C----HHHHHH
T ss_pred ECCCCCCHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEEeCHHHHhhccCc-----c----hHHHHH
Confidence 7642 22211 11 11122 222222222 355889999999998643110 0 234444
Q ss_pred HHHHhcCCC-CC--CcEEEEEecCCCC---CCC---hhhhCCCCcceEEEecCCCHHHHHHHHHHHHhcCCC--CCCCCC
Q 007575 459 LLTEMDGFD-SN--SAVIVLGATNRSD---VLD---PALRRPGRFDRVVMVETPDKIGREAILKVHVSKKEL--PLAKDI 527 (597)
Q Consensus 459 LL~emdg~~-~~--~~VIVIaaTNrpd---~LD---~aLlRpgRFd~~I~v~~Pd~~eR~eILk~~l~~~~~--~l~~dv 527 (597)
++..++... .. .++.+|++|+.++ .++ +.+.+ +|...+.+++++.++..++++.++..... .+.++
T Consensus 164 l~~~~~~~~~~~~~~~v~lI~~~~~~~~~~~l~~~~~~~~~--~~~~~i~l~~l~~~e~~~ll~~~~~~~~~~~~~~~~- 240 (412)
T 1w5s_A 164 LLRVHEEIPSRDGVNRIGFLLVASDVRALSYMREKIPQVES--QIGFKLHLPAYKSRELYTILEQRAELGLRDTVWEPR- 240 (412)
T ss_dssp HHTHHHHSCCTTSCCBEEEEEEEEETHHHHHHHHHCHHHHT--TCSEEEECCCCCHHHHHHHHHHHHHHHBCTTSCCHH-
T ss_pred HHHHHHhcccCCCCceEEEEEEeccccHHHHHhhhcchhhh--hcCCeeeeCCCCHHHHHHHHHHHHHhcCCCCCCChH-
Confidence 544444332 12 6788888887664 344 66666 66666999999999999999887653211 12222
Q ss_pred CHHHHHHhCC------CCCHHHHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHh
Q 007575 528 DLGDIASMTT------GFTGADLANLVNEAALLAGRLNKVVVEKIDFIHAVERSI 576 (597)
Q Consensus 528 dl~~LA~~t~------G~SgaDL~~Lv~eAal~A~r~~~~~It~~d~~~Al~~v~ 576 (597)
.+..++..+. | .++.+.+++..|...|...+...|+.+++..++....
T Consensus 241 ~~~~i~~~~~~~~~~~G-~p~~~~~l~~~a~~~a~~~~~~~i~~~~v~~~~~~~~ 294 (412)
T 1w5s_A 241 HLELISDVYGEDKGGDG-SARRAIVALKMACEMAEAMGRDSLSEDLVRKAVSENE 294 (412)
T ss_dssp HHHHHHHHHCGGGTSCC-CHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHhccCCC-cHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHh
Confidence 3677888887 6 5788999999998888888888899999998887754
No 79
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=99.48 E-value=2.5e-14 Score=131.66 Aligned_cols=112 Identities=16% Similarity=0.222 Sum_probs=81.3
Q ss_pred cccCChHHHHHHHHHHHHhcChhHHhhcCCCCCCceEEeCCCCChHHHHHHHHHHhc---CCCeeeechhhhHHHHhhcc
Q 007575 333 DVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEA---EVPFISCSASEFVELYVGMG 409 (597)
Q Consensus 333 dV~G~de~k~~L~eiv~~l~~p~~~~~lg~~~p~gVLL~GPPGTGKT~LArAIA~el---~~pfi~is~sef~~~~vG~~ 409 (597)
+++|.++..+.+.+.+..+. ..+.+|||+||||||||++|++++... +.||+ ++|..+.+.
T Consensus 2 ~iiG~s~~~~~~~~~~~~~a----------~~~~~vll~G~~GtGKt~lA~~i~~~~~~~~~~~v-~~~~~~~~~----- 65 (145)
T 3n70_A 2 ELIGRSEWINQYRRRLQQLS----------ETDIAVWLYGAPGTGRMTGARYLHQFGRNAQGEFV-YRELTPDNA----- 65 (145)
T ss_dssp --CCSSHHHHHHHHHHHHHT----------TCCSCEEEESSTTSSHHHHHHHHHHSSTTTTSCCE-EEECCTTTS-----
T ss_pred CceeCCHHHHHHHHHHHHHh----------CCCCCEEEECCCCCCHHHHHHHHHHhCCccCCCEE-EECCCCCcc-----
Confidence 68899999888888776542 234579999999999999999999986 78999 999876443
Q ss_pred hHHHHHHHHHHHhcCCeEEEEcCcchhhhhcCCcccccchhHHHHHHHHHHHHhcCCCCCCcEEEEEecCCC
Q 007575 410 ASRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATNRS 481 (597)
Q Consensus 410 e~~vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~eqtLnqLL~emdg~~~~~~VIVIaaTNrp 481 (597)
.....+|..+.. ++|||||||.+.... ...|+..|... ...+.+|++||.+
T Consensus 66 -~~~~~~~~~a~~---g~l~ldei~~l~~~~---------------q~~Ll~~l~~~--~~~~~~I~~t~~~ 116 (145)
T 3n70_A 66 -PQLNDFIALAQG---GTLVLSHPEHLTREQ---------------QYHLVQLQSQE--HRPFRLIGIGDTS 116 (145)
T ss_dssp -SCHHHHHHHHTT---SCEEEECGGGSCHHH---------------HHHHHHHHHSS--SCSSCEEEEESSC
T ss_pred -hhhhcHHHHcCC---cEEEEcChHHCCHHH---------------HHHHHHHHhhc--CCCEEEEEECCcC
Confidence 344566766644 599999999986432 24455555432 3456788899875
No 80
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=99.47 E-value=1.5e-13 Score=154.85 Aligned_cols=218 Identities=27% Similarity=0.357 Sum_probs=136.2
Q ss_pred CCCCcccccccCChHHHHHHHHHHHHhcChhHHhhcCCCCCCceEEeCCCCChHHHHHHHHHHhcCCCe---eeechh--
Q 007575 325 QGDTITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPF---ISCSAS-- 399 (597)
Q Consensus 325 ~~~~vtf~dV~G~de~k~~L~eiv~~l~~p~~~~~lg~~~p~gVLL~GPPGTGKT~LArAIA~el~~pf---i~is~s-- 399 (597)
..+...|++++|++.+++.+...+.. ...++|+||||||||+||+++|+.+.... +.+.+.
T Consensus 34 ~~rp~~l~~i~G~~~~l~~l~~~i~~--------------g~~vll~Gp~GtGKTtlar~ia~~l~~~~~~~~~~~~~~~ 99 (604)
T 3k1j_A 34 EVPEKLIDQVIGQEHAVEVIKTAANQ--------------KRHVLLIGEPGTGKSMLGQAMAELLPTETLEDILVFPNPE 99 (604)
T ss_dssp CCCSSHHHHCCSCHHHHHHHHHHHHT--------------TCCEEEECCTTSSHHHHHHHHHHTSCCSSCEEEEEECCTT
T ss_pred cccccccceEECchhhHhhccccccC--------------CCEEEEEeCCCCCHHHHHHHHhccCCcccCCeEEEeCCcc
Confidence 34567899999999998777776651 24799999999999999999999874321 111000
Q ss_pred ----------------hhHHHH--------------------------------------hhcchHHHHHHHHH------
Q 007575 400 ----------------EFVELY--------------------------------------VGMGASRVRDLFAR------ 419 (597)
Q Consensus 400 ----------------ef~~~~--------------------------------------vG~~e~~vr~lF~~------ 419 (597)
++.+.. +.........+|..
T Consensus 100 ~~~~p~i~~~p~g~~~~~~e~~~~~~~~~~~~r~~~~~~~~~~~~~nl~v~~~~~~~~~~v~~~~~~~~~L~G~~~~~~~ 179 (604)
T 3k1j_A 100 DENMPRIKTVPACQGRRIVEKYREKAKSQESVKSSNMRLKSTVLVPKLLVDNCGRTKAPFIDATGAHAGALLGDVRHDPF 179 (604)
T ss_dssp CTTSCEEEEEETTHHHHHHHHHHHHHHHHTCC-----------CCCEEEECCTTCSSCCEEECTTCCHHHHHCEECCCCC
T ss_pred cccCCcEEEEecchHHHHHHHHHHhhccchhhhhhcccccccccccceeeccccCCCCCEEEcCCCCHHhcCceEEechh
Confidence 000000 00000011111110
Q ss_pred -----------------HHhcCCeEEEEcCcchhhhhcCCcccccchhHHHHHHHHHHHHhcCC----------------
Q 007575 420 -----------------AKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGF---------------- 466 (597)
Q Consensus 420 -----------------A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~eqtLnqLL~emdg~---------------- 466 (597)
.....+.+|||||+|.+... ..+.|+..|+.-
T Consensus 180 ~~g~~~~g~~~~i~~g~~~~a~~gvL~LDEi~~l~~~---------------~q~~Ll~~Le~~~~~~~g~~~~~~~~~l 244 (604)
T 3k1j_A 180 QSGGLGTPAHERVEPGMIHRAHKGVLFIDEIATLSLK---------------MQQSLLTAMQEKKFPITGQSEMSSGAMV 244 (604)
T ss_dssp ----CCCCGGGGEECCHHHHTTTSEEEETTGGGSCHH---------------HHHHHHHHHHHSEECCBCSCTTSGGGGC
T ss_pred hcCCccccccccccCceeeecCCCEEEEechhhCCHH---------------HHHHHHHHHHcCcEEecccccccccccC
Confidence 11124569999999997422 334555555411
Q ss_pred ---CCCCcEEEEEecCCC--CCCChhhhCCCCcc---eEEEecC--C-CHHHHHHHHHHHHhcC-----CCCCCCCCCHH
Q 007575 467 ---DSNSAVIVLGATNRS--DVLDPALRRPGRFD---RVVMVET--P-DKIGREAILKVHVSKK-----ELPLAKDIDLG 530 (597)
Q Consensus 467 ---~~~~~VIVIaaTNrp--d~LD~aLlRpgRFd---~~I~v~~--P-d~~eR~eILk~~l~~~-----~~~l~~dvdl~ 530 (597)
.-+..+.||++||+. +.++++|++ ||+ ..+.++. + ..+....+++.+.... ...+.++ .+.
T Consensus 245 ~~~~~p~~~~vI~atn~~~~~~l~~~l~~--R~~v~~i~i~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ls~e-Al~ 321 (604)
T 3k1j_A 245 RTEPVPCDFVLVAAGNLDTVDKMHPALRS--RIRGYGYEVYMRTTMPDTIENRRKLVQFVAQEVKRDGKIPHFTKE-AVE 321 (604)
T ss_dssp BCSCEECCCEEEEEECHHHHHHSCHHHHH--HHHHHSEEEECCSEEECCHHHHHHHHHHHHHHHHHHCSSCCBBHH-HHH
T ss_pred CCCccceeEEEEEecCHHHHhhcCHHHHH--HhhccceEeeccccccCCHHHHHHHHHHHHHHHhhccCcccCCHH-HHH
Confidence 112467899999987 679999999 886 4555543 2 3455556655443321 1223322 245
Q ss_pred HHHHhC---CCC------CHHHHHHHHHHHHHHHHhcCCCcccHHHHHHHHHH
Q 007575 531 DIASMT---TGF------TGADLANLVNEAALLAGRLNKVVVEKIDFIHAVER 574 (597)
Q Consensus 531 ~LA~~t---~G~------SgaDL~~Lv~eAal~A~r~~~~~It~~d~~~Al~~ 574 (597)
.|.+.. .|- +.++|.++++.|...|..++...|+.+|+.+|++.
T Consensus 322 ~Li~~~~r~~g~r~~l~~~~R~l~~llr~A~~~A~~~~~~~I~~edv~~A~~~ 374 (604)
T 3k1j_A 322 EIVREAQKRAGRKGHLTLRLRDLGGIVRAAGDIAVKKGKKYVEREDVIEAVKM 374 (604)
T ss_dssp HHHHHHHHTTCSTTEEECCHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHH
T ss_pred HHHHHHhhhhccccccccCHHHHHHHHHHHHHHHHhcCcccccHHHHHHHHHh
Confidence 555433 452 68999999999999998889999999999999865
No 81
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=99.46 E-value=2.1e-14 Score=131.95 Aligned_cols=112 Identities=17% Similarity=0.267 Sum_probs=80.4
Q ss_pred cccCChHHHHHHHHHHHHhcChhHHhhcCCCCCCceEEeCCCCChHHHHHHHHHHhcCCCeeeechhhhHHHHhhcchHH
Q 007575 333 DVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFVELYVGMGASR 412 (597)
Q Consensus 333 dV~G~de~k~~L~eiv~~l~~p~~~~~lg~~~p~gVLL~GPPGTGKT~LArAIA~el~~pfi~is~sef~~~~vG~~e~~ 412 (597)
+++|.+++.+++.+.+..+. ..+.+|||+||||||||++|++++.+.+ ||+.++|+++.+.+
T Consensus 5 ~~iG~s~~~~~l~~~~~~~~----------~~~~~vll~G~~GtGKt~lA~~i~~~~~-~~~~~~~~~~~~~~------- 66 (143)
T 3co5_A 5 DKLGNSAAIQEMNREVEAAA----------KRTSPVFLTGEAGSPFETVARYFHKNGT-PWVSPARVEYLIDM------- 66 (143)
T ss_dssp ---CCCHHHHHHHHHHHHHH----------TCSSCEEEEEETTCCHHHHHGGGCCTTS-CEECCSSTTHHHHC-------
T ss_pred CceeCCHHHHHHHHHHHHHh----------CCCCcEEEECCCCccHHHHHHHHHHhCC-CeEEechhhCChHh-------
Confidence 58899999888888887542 2345799999999999999999999988 99999999876543
Q ss_pred HHHHHHHHHhcCCeEEEEcCcchhhhhcCCcccccchhHHHHHHHHHHHHhcCCCCCCcEEEEEecCCC
Q 007575 413 VRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATNRS 481 (597)
Q Consensus 413 vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~eqtLnqLL~emdg~~~~~~VIVIaaTNrp 481 (597)
...+|+.+. .++|||||||.+.... ...|+..|+... ..++.+|++||.+
T Consensus 67 ~~~~~~~a~---~~~l~lDei~~l~~~~---------------q~~Ll~~l~~~~-~~~~~iI~~tn~~ 116 (143)
T 3co5_A 67 PMELLQKAE---GGVLYVGDIAQYSRNI---------------QTGITFIIGKAE-RCRVRVIASCSYA 116 (143)
T ss_dssp HHHHHHHTT---TSEEEEEECTTCCHHH---------------HHHHHHHHHHHT-TTTCEEEEEEEEC
T ss_pred hhhHHHhCC---CCeEEEeChHHCCHHH---------------HHHHHHHHHhCC-CCCEEEEEecCCC
Confidence 455666654 4599999999986432 133444443222 3457788888865
No 82
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=99.45 E-value=3.1e-14 Score=174.64 Aligned_cols=156 Identities=17% Similarity=0.196 Sum_probs=108.0
Q ss_pred CCCCcccccccCChHHHHHHHHHHHH-hcC----------hhHHhh------cCCC----------CCCc--eEEeCCCC
Q 007575 325 QGDTITFADVAGVDEAKEELEEIVEF-LRS----------PDKYIR------LGAR----------PPRG--VLLVGLPG 375 (597)
Q Consensus 325 ~~~~vtf~dV~G~de~k~~L~eiv~~-l~~----------p~~~~~------lg~~----------~p~g--VLL~GPPG 375 (597)
..+.++|+||.|.+++|+++.+.+.+ ++. ++.|.. .|.. +|+| +|||||||
T Consensus 1013 ~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tG~~glD~~lg~GG~p~g~~~l~~G~~g 1092 (1706)
T 3cmw_A 1013 SASGSSTGSMSAIDENKQKALAAALGQIEKQFGKGSIMRLGEDRSMDVETISTGSLSLDIALGAGGLPMGRIVEIYGPES 1092 (1706)
T ss_dssp -----------CTTHHHHHHHHHHHHHHHHHHCGGGSEEGGGCGGGSCCEECCSCHHHHHHTSSSSEETTSEEEEECSTT
T ss_pred ccCCceeeecCCccHHHHHHHHHHHHHHhhccCcccchhchhhhhccccccccCchhHHHHhccCCCCCCCEEEEEcCCC
Confidence 44569999999999999999998887 422 445544 2222 5566 99999999
Q ss_pred ChHHHHHHHHHHhc---CCC--eeeech--hhhH--------HHHhhc----chHHHHHHHHHHHhcCCeEEEEcCcchh
Q 007575 376 TGKTLLAKAVAGEA---EVP--FISCSA--SEFV--------ELYVGM----GASRVRDLFARAKKEAPSIIFIDEIDAV 436 (597)
Q Consensus 376 TGKT~LArAIA~el---~~p--fi~is~--sef~--------~~~vG~----~e~~vr~lF~~A~~~aP~ILfIDEIDaL 436 (597)
||||+||++++.+. +-| |+.+.. +++. +.++++ +++.++.+|..|+..+||+||+||+|+|
T Consensus 1093 ~GKT~la~~~~~~~~~~g~~~~fi~~~~~~~~~~~~~~G~d~~~~~~~~~~~~e~~l~~~~~~ar~~~~~~i~~d~~~al 1172 (1706)
T 3cmw_A 1093 SGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALARSGAVDVIVVDSVAAL 1172 (1706)
T ss_dssp SSHHHHHHHHHHHHHHTTCCEEEECTTSCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHHHHTCCSEEEESCGGGC
T ss_pred CChHHHHHHHHHHhhhcCCceeEEEcccchHHHHHHHhCCCHHHHhhccccchHHHHHHHHHHHHhcCCeEEEeCchHhc
Confidence 99999999999876 344 444433 3333 456667 8999999999999999999999999999
Q ss_pred hhhcCCc--ccccchhHHHHHHHHHHHHhcCCCCCCcEEEEEecCCC
Q 007575 437 AKSRDGR--FRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATNRS 481 (597)
Q Consensus 437 ~~~r~~~--~~~~~~~e~eqtLnqLL~emdg~~~~~~VIVIaaTNrp 481 (597)
.+.+... .........++.++|+|.+|++.....+|+|| +||+.
T Consensus 1173 ~~~~~~~g~~~~~~~~~~~r~~~q~l~~~~~~~~~~~v~v~-~~n~~ 1218 (1706)
T 3cmw_A 1173 TPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLI-FINQI 1218 (1706)
T ss_dssp CCHHHHHSCTTCCCTTHHHHHHHHHHHHHHHHHHHTTCEEE-EEECE
T ss_pred CcccccccccccccccHHHHHHHHHHHHHHhhhccCCeEEE-Eeccc
Confidence 9884310 00111255677899999999987776778888 77764
No 83
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=99.43 E-value=1.8e-12 Score=135.29 Aligned_cols=163 Identities=18% Similarity=0.293 Sum_probs=113.8
Q ss_pred CCCCCceEEeCCCCChHHHHHHHHHHhcCCCeee-------e-chh--------hhHHHH-----hhcchHHHHHHHHHH
Q 007575 362 ARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFIS-------C-SAS--------EFVELY-----VGMGASRVRDLFARA 420 (597)
Q Consensus 362 ~~~p~gVLL~GPPGTGKT~LArAIA~el~~pfi~-------i-s~s--------ef~~~~-----vG~~e~~vr~lF~~A 420 (597)
.+.|..+||+||||+|||++|+++|+.+.++... + +|. ++.... ...+...++++++.+
T Consensus 21 ~~~~~a~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c~~~~~~~~~d~~~~~~~~~~~~~~i~~ir~l~~~~ 100 (334)
T 1a5t_A 21 GRGHHALLIQALPGMGDDALIYALSRYLLCQQPQGHKSCGHCRGCQLMQAGTHPDYYTLAPEKGKNTLGVDAVREVTEKL 100 (334)
T ss_dssp TCCCSEEEEECCTTSCHHHHHHHHHHHHTCSSCBTTBCCSCSHHHHHHHHTCCTTEEEECCCTTCSSBCHHHHHHHHHHT
T ss_pred CCcceeEEEECCCCchHHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHhcCCCCCEEEEeccccCCCCCHHHHHHHHHHH
Confidence 3567789999999999999999999987543210 0 011 111100 112345678887776
Q ss_pred Hh----cCCeEEEEcCcchhhhhcCCcccccchhHHHHHHHHHHHHhcCCCCCCcEEEEEecCCCCCCChhhhCCCCcce
Q 007575 421 KK----EAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATNRSDVLDPALRRPGRFDR 496 (597)
Q Consensus 421 ~~----~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~eqtLnqLL~emdg~~~~~~VIVIaaTNrpd~LD~aLlRpgRFd~ 496 (597)
.. ..+.|++|||+|.+.. ...|.|+..|+. +...+++|.+||.++.+.+.+++ |+.
T Consensus 101 ~~~~~~~~~kvviIdead~l~~---------------~a~naLLk~lEe--p~~~~~~Il~t~~~~~l~~ti~S--Rc~- 160 (334)
T 1a5t_A 101 NEHARLGGAKVVWVTDAALLTD---------------AAANALLKTLEE--PPAETWFFLATREPERLLATLRS--RCR- 160 (334)
T ss_dssp TSCCTTSSCEEEEESCGGGBCH---------------HHHHHHHHHHTS--CCTTEEEEEEESCGGGSCHHHHT--TSE-
T ss_pred hhccccCCcEEEEECchhhcCH---------------HHHHHHHHHhcC--CCCCeEEEEEeCChHhCcHHHhh--cce-
Confidence 53 3467999999999853 245888999984 44567888888999999999999 774
Q ss_pred EEEecCCCHHHHHHHHHHHHhcCCCCCCCCCCHHHHHHhCCCCCHHHHHHHHHHH
Q 007575 497 VVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTTGFTGADLANLVNEA 551 (597)
Q Consensus 497 ~I~v~~Pd~~eR~eILk~~l~~~~~~l~~dvdl~~LA~~t~G~SgaDL~~Lv~eA 551 (597)
.+.+++|+.++..++++... .+.++ .++.++..+.| +.+.+.++++.+
T Consensus 161 ~~~~~~~~~~~~~~~L~~~~-----~~~~~-~~~~l~~~s~G-~~r~a~~~l~~~ 208 (334)
T 1a5t_A 161 LHYLAPPPEQYAVTWLSREV-----TMSQD-ALLAALRLSAG-SPGAALALFQGD 208 (334)
T ss_dssp EEECCCCCHHHHHHHHHHHC-----CCCHH-HHHHHHHHTTT-CHHHHHHTTSSH
T ss_pred eeeCCCCCHHHHHHHHHHhc-----CCCHH-HHHHHHHHcCC-CHHHHHHHhccc
Confidence 79999999999999988764 22222 46777877765 555555555443
No 84
>3vlf_B 26S protease regulatory subunit 7 homolog; heat repeat, chaperone, chaperone-protein binding complex; HET: DNA; 3.80A {Saccharomyces cerevisiae} PDB: 4a3v_B*
Probab=99.35 E-value=1.8e-12 Score=110.55 Aligned_cols=83 Identities=27% Similarity=0.405 Sum_probs=67.9
Q ss_pred CHHHHHHHHHHHHhcCCCCCCCCCCHHHHHHhCCCCCHHHHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHhccccccc
Q 007575 504 DKIGREAILKVHVSKKELPLAKDIDLGDIASMTTGFTGADLANLVNEAALLAGRLNKVVVEKIDFIHAVERSIAVSLSLS 583 (597)
Q Consensus 504 d~~eR~eILk~~l~~~~~~l~~dvdl~~LA~~t~G~SgaDL~~Lv~eAal~A~r~~~~~It~~d~~~Al~~v~~g~~k~s 583 (597)
|.++|.+||+.|+++ .++.+++|++.||..|+||||+||.++|++|++.|.+++...|+++||..|++++.+|.++++
T Consensus 2 d~~~R~~Il~~~~~~--~~~~~dvdl~~lA~~t~G~SGADl~~l~~eAa~~a~r~~~~~i~~~df~~Al~~v~~~~~~~~ 79 (88)
T 3vlf_B 2 DLEGRANIFRIHSKS--MSVERGIRWELISRLCPNSTGAELRSVCTEAGMFAIRARRKVATEKDFLKAVDKVISGYKKFS 79 (88)
T ss_dssp CSSHHHHHHHHHHTT--SCBCSCCCHHHHHHTCSSCCHHHHHHHHHHHHHHHHHHSCSSBCHHHHHHHHHHHTC------
T ss_pred CHHHHHHHHHHHHCC--CCCCCccCHHHHHHHcCCCcHHHHHHHHHHHHHHHHHhccccCCHHHHHHHHHHHhcCccccc
Confidence 567999999999975 567789999999999999999999999999999999999999999999999999999999988
Q ss_pred cccch
Q 007575 584 LSLSL 588 (597)
Q Consensus 584 ~~ls~ 588 (597)
....+
T Consensus 80 ~~~~y 84 (88)
T 3vlf_B 80 STSRY 84 (88)
T ss_dssp -----
T ss_pred chhHH
Confidence 76654
No 85
>3kw6_A 26S protease regulatory subunit 8; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Homo sapiens}
Probab=99.31 E-value=6.5e-12 Score=104.33 Aligned_cols=76 Identities=33% Similarity=0.498 Sum_probs=70.2
Q ss_pred cCCCHHHHHHHHHHHHhcCCCCCCCCCCHHHHHHhCCCCCHHHHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHhcc
Q 007575 501 ETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTTGFTGADLANLVNEAALLAGRLNKVVVEKIDFIHAVERSIAV 578 (597)
Q Consensus 501 ~~Pd~~eR~eILk~~l~~~~~~l~~dvdl~~LA~~t~G~SgaDL~~Lv~eAal~A~r~~~~~It~~d~~~Al~~v~~g 578 (597)
++||.++|.+||+.|+++ +++.++++++.||..|+||||+||.++|++|++.|.+++...|+++||..|+++++..
T Consensus 1 plPd~~~R~~Il~~~l~~--~~~~~~~dl~~la~~t~G~SGADi~~l~~eA~~~a~~~~~~~i~~~d~~~Al~~v~~~ 76 (78)
T 3kw6_A 1 PPPNEEARLDILKIHSRK--MNLTRGINLRKIAELMPGASGAEVKGVCTEAGMYALRERRVHVTQEDFEMAVAKVMQK 76 (78)
T ss_dssp CCCCHHHHHHHHHHHHTT--SEECTTCCHHHHHHTCTTCCHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHHHC-
T ss_pred CcCCHHHHHHHHHHHhcC--CCCCCccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Confidence 589999999999999975 4566889999999999999999999999999999999999999999999999998754
No 86
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=99.31 E-value=1.5e-11 Score=127.56 Aligned_cols=142 Identities=14% Similarity=0.205 Sum_probs=105.5
Q ss_pred CChHHHHHHHHHHHHhcChhHHhhcCCCCCCceEEeCCCCChHHHHHHHHHHhc------CCCeeeechhhhHHHHhhcc
Q 007575 336 GVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEA------EVPFISCSASEFVELYVGMG 409 (597)
Q Consensus 336 G~de~k~~L~eiv~~l~~p~~~~~lg~~~p~gVLL~GPPGTGKT~LArAIA~el------~~pfi~is~sef~~~~vG~~ 409 (597)
|++++.+.|...+.. .+ +..+||+||||+|||++|+++|..+ ...|+.+++++ ...+
T Consensus 1 g~~~~~~~L~~~i~~-----------~~-~~~~Lf~Gp~G~GKtt~a~~la~~~~~~~~~~~d~~~l~~~~-----~~~~ 63 (305)
T 2gno_A 1 GAKDQLETLKRIIEK-----------SE-GISILINGEDLSYPREVSLELPEYVEKFPPKASDVLEIDPEG-----ENIG 63 (305)
T ss_dssp ---CHHHHHHHHHHT-----------CS-SEEEEEECSSSSHHHHHHHHHHHHHHTSCCCTTTEEEECCSS-----SCBC
T ss_pred ChHHHHHHHHHHHHC-----------CC-CcEEEEECCCCCCHHHHHHHHHHhCchhhccCCCEEEEcCCc-----CCCC
Confidence 567777777777652 12 4479999999999999999999863 34666666542 0234
Q ss_pred hHHHHHHHHHHHhc----CCeEEEEcCcchhhhhcCCcccccchhHHHHHHHHHHHHhcCCCCCCcEEEEEecCCCCCCC
Q 007575 410 ASRVRDLFARAKKE----APSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATNRSDVLD 485 (597)
Q Consensus 410 e~~vr~lF~~A~~~----aP~ILfIDEIDaL~~~r~~~~~~~~~~e~eqtLnqLL~emdg~~~~~~VIVIaaTNrpd~LD 485 (597)
...++++++.+... ...|++|||+|.+.. ...|.|+..|+. ++..+++|.+|+.++.+.
T Consensus 64 id~ir~li~~~~~~p~~~~~kvviIdead~lt~---------------~a~naLLk~LEe--p~~~t~fIl~t~~~~kl~ 126 (305)
T 2gno_A 64 IDDIRTIKDFLNYSPELYTRKYVIVHDCERMTQ---------------QAANAFLKALEE--PPEYAVIVLNTRRWHYLL 126 (305)
T ss_dssp HHHHHHHHHHHTSCCSSSSSEEEEETTGGGBCH---------------HHHHHTHHHHHS--CCTTEEEEEEESCGGGSC
T ss_pred HHHHHHHHHHHhhccccCCceEEEeccHHHhCH---------------HHHHHHHHHHhC--CCCCeEEEEEECChHhCh
Confidence 55688888888643 246999999999853 235889999984 445677777788889999
Q ss_pred hhhhCCCCcceEEEecCCCHHHHHHHHHHHH
Q 007575 486 PALRRPGRFDRVVMVETPDKIGREAILKVHV 516 (597)
Q Consensus 486 ~aLlRpgRFd~~I~v~~Pd~~eR~eILk~~l 516 (597)
+++++ | ++.+++|+.++..+.++..+
T Consensus 127 ~tI~S--R---~~~f~~l~~~~i~~~L~~~~ 152 (305)
T 2gno_A 127 PTIKS--R---VFRVVVNVPKEFRDLVKEKI 152 (305)
T ss_dssp HHHHT--T---SEEEECCCCHHHHHHHHHHH
T ss_pred HHHHc--e---eEeCCCCCHHHHHHHHHHHh
Confidence 99999 7 78999999999999988776
No 87
>2krk_A 26S protease regulatory subunit 8; structural genomics, northeast structural genomics consortium (NESG), target HR3102A, PSI-2; NMR {Homo sapiens}
Probab=99.31 E-value=4.8e-12 Score=107.65 Aligned_cols=77 Identities=32% Similarity=0.484 Sum_probs=71.2
Q ss_pred ecCCCHHHHHHHHHHHHhcCCCCCCCCCCHHHHHHhCCCCCHHHHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHhcc
Q 007575 500 VETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTTGFTGADLANLVNEAALLAGRLNKVVVEKIDFIHAVERSIAV 578 (597)
Q Consensus 500 v~~Pd~~eR~eILk~~l~~~~~~l~~dvdl~~LA~~t~G~SgaDL~~Lv~eAal~A~r~~~~~It~~d~~~Al~~v~~g 578 (597)
-.+||.++|.+||+.++++ +++.+++|++.||+.|+||||+||.++|++|++.|.++....|+++||+.|++++.++
T Consensus 8 ~~~Pd~~~R~~IL~~~l~~--~~l~~dvdl~~LA~~T~G~SGADL~~l~~eAa~~alr~~~~~I~~~df~~Al~~v~p~ 84 (86)
T 2krk_A 8 HSHPNEEARLDILKIHSRK--MNLTRGINLRKIAELMPGASGAEVKGVCTEAGMYALRERRVHVTQEDFEMAVAKVMQK 84 (86)
T ss_dssp CCCCCHHHHHHHHHHHTTT--SEECTTCCCHHHHHTCSSCCHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHHHCC
T ss_pred CCCcCHHHHHHHHHHHHcC--CCCCcccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHccC
Confidence 3589999999999999975 4666889999999999999999999999999999999999999999999999999865
No 88
>1ny5_A Transcriptional regulator (NTRC family); AAA+ ATPase, sigma54 activator, bacterial transcription, DIM transcription; HET: ADP; 2.40A {Aquifex aeolicus} SCOP: c.23.1.1 c.37.1.20 PDB: 1ny6_A* 3m0e_A* 1zy2_A*
Probab=99.26 E-value=7.7e-12 Score=133.53 Aligned_cols=207 Identities=20% Similarity=0.270 Sum_probs=129.6
Q ss_pred cccccCChHHHHHHHHHHHHhcChhHHhhcCCCCCCceEEeCCCCChHHHHHHHHHHhc---CCCeeeechhhhHHH---
Q 007575 331 FADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEA---EVPFISCSASEFVEL--- 404 (597)
Q Consensus 331 f~dV~G~de~k~~L~eiv~~l~~p~~~~~lg~~~p~gVLL~GPPGTGKT~LArAIA~el---~~pfi~is~sef~~~--- 404 (597)
+..++|..+..+++.+.+..+.. ....|||+|++||||+++|+++.... +.||+.++|..+.+.
T Consensus 136 ~~~~ig~s~~m~~l~~~i~~~a~----------~~~~vli~Ge~GtGK~~lAr~ih~~s~r~~~~fv~v~~~~~~~~~~~ 205 (387)
T 1ny5_A 136 EEEYVFESPKMKEILEKIKKISC----------AECPVLITGESGVGKEVVARLIHKLSDRSKEPFVALNVASIPRDIFE 205 (387)
T ss_dssp CCCCCCCSHHHHHHHHHHHHHTT----------CCSCEEEECSTTSSHHHHHHHHHHHSTTTTSCEEEEETTTSCHHHHH
T ss_pred chhhhhccHHhhHHHHHHHHhcC----------CCCCeEEecCCCcCHHHHHHHHHHhcCCCCCCeEEEecCCCCHHHHH
Confidence 34678888877777777765432 23468999999999999999998765 479999999876432
Q ss_pred --Hhhcch-------HHHHHHHHHHHhcCCeEEEEcCcchhhhhcCCcccccchhHHHHHHHHHHHHhcC-----CCC--
Q 007575 405 --YVGMGA-------SRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDG-----FDS-- 468 (597)
Q Consensus 405 --~vG~~e-------~~vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~eqtLnqLL~emdg-----~~~-- 468 (597)
..|... .....+|+.|..+ +||||||+.+.... ...|+..|+. ...
T Consensus 206 ~elfg~~~g~~tga~~~~~g~~~~a~~g---tlfldei~~l~~~~---------------q~~Ll~~l~~~~~~~~g~~~ 267 (387)
T 1ny5_A 206 AELFGYEKGAFTGAVSSKEGFFELADGG---TLFLDEIGELSLEA---------------QAKLLRVIESGKFYRLGGRK 267 (387)
T ss_dssp HHHHCBCTTSSTTCCSCBCCHHHHTTTS---EEEEESGGGCCHHH---------------HHHHHHHHHHSEECCBTCCS
T ss_pred HHhcCCCCCCCCCcccccCCceeeCCCc---EEEEcChhhCCHHH---------------HHHHHHHHhcCcEEeCCCCc
Confidence 222110 1123466666554 99999999986432 2344444432 111
Q ss_pred --CCcEEEEEecCCC-------CCCChhhhCCCCcceEEEecCCCHHHHH----HHHHHHHh----cCCCC---CCCCCC
Q 007575 469 --NSAVIVLGATNRS-------DVLDPALRRPGRFDRVVMVETPDKIGRE----AILKVHVS----KKELP---LAKDID 528 (597)
Q Consensus 469 --~~~VIVIaaTNrp-------d~LD~aLlRpgRFd~~I~v~~Pd~~eR~----eILk~~l~----~~~~~---l~~dvd 528 (597)
...+.||+|||+. ..+.+.|.- |+. .+.+..|...+|. .++..++. +.+.+ +.++ .
T Consensus 268 ~~~~~~rii~at~~~l~~~~~~g~fr~dl~~--rl~-~~~i~lPpLreR~~Di~~l~~~~l~~~~~~~~~~~~~~~~~-a 343 (387)
T 1ny5_A 268 EIEVNVRILAATNRNIKELVKEGKFREDLYY--RLG-VIEIEIPPLRERKEDIIPLANHFLKKFSRKYAKEVEGFTKS-A 343 (387)
T ss_dssp BEECCCEEEEEESSCHHHHHHTTSSCHHHHH--HHT-TEEEECCCGGGCHHHHHHHHHHHHHHHHHHTTCCCCEECHH-H
T ss_pred eeeccEEEEEeCCCCHHHHHHcCCccHHHHH--hhc-CCeecCCcchhccccHHHHHHHHHHHHHHHcCCCCCCCCHH-H
Confidence 2357899999974 123333332 332 3556667766653 33444433 22222 2222 2
Q ss_pred HHHHHHhCCCCCHHHHHHHHHHHHHHHHhcCCCcccHHHHHHHH
Q 007575 529 LGDIASMTTGFTGADLANLVNEAALLAGRLNKVVVEKIDFIHAV 572 (597)
Q Consensus 529 l~~LA~~t~G~SgaDL~~Lv~eAal~A~r~~~~~It~~d~~~Al 572 (597)
++.|..+.+..+.++|++++.+|+..+ ....|+.+|+...+
T Consensus 344 ~~~l~~~~wpGNvreL~~~i~~~~~~~---~~~~i~~~~l~~~~ 384 (387)
T 1ny5_A 344 QELLLSYPWYGNVRELKNVIERAVLFS---EGKFIDRGELSCLV 384 (387)
T ss_dssp HHHHHHSCCTTHHHHHHHHHHHHHHHC---CSSEECHHHHHHHC
T ss_pred HHHHHhCCCCcHHHHHHHHHHHHHHhC---CCCcCcHHHCcHhh
Confidence 555666665556789999999999876 44689999886543
No 89
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=99.20 E-value=9.4e-11 Score=149.55 Aligned_cols=172 Identities=19% Similarity=0.284 Sum_probs=111.8
Q ss_pred CCceEEeCCCCChHHHHHHH-HHHhcCCCeeeechhhhHHHHhhcchHHHHHHHHHHH---------------hcCCeEE
Q 007575 365 PRGVLLVGLPGTGKTLLAKA-VAGEAEVPFISCSASEFVELYVGMGASRVRDLFARAK---------------KEAPSII 428 (597)
Q Consensus 365 p~gVLL~GPPGTGKT~LArA-IA~el~~pfi~is~sef~~~~vG~~e~~vr~lF~~A~---------------~~aP~IL 428 (597)
.+++||+||||||||++|+. ++...+.+++.++++... +...+...++... .+.++||
T Consensus 1267 ~~~vLL~GPpGtGKT~la~~~l~~~~~~~~~~infsa~t------s~~~~~~~i~~~~~~~~~~~g~~~~P~~~gk~~Vl 1340 (2695)
T 4akg_A 1267 KRGIILCGPPGSGKTMIMNNALRNSSLYDVVGINFSKDT------TTEHILSALHRHTNYVTTSKGLTLLPKSDIKNLVL 1340 (2695)
T ss_dssp TCEEEEECSTTSSHHHHHHHHHHSCSSCEEEEEECCTTC------CHHHHHHHHHHHBCCEEETTTEEEEEBSSSSCEEE
T ss_pred CCeEEEECCCCCCHHHHHHHHHhcCCCCceEEEEeecCC------CHHHHHHHHHHHhhhccccCCccccCCCCCceEEE
Confidence 45899999999999999955 455557788888776442 2234444444331 1235799
Q ss_pred EEcCcchhhhhcCCcccccchhHHHHHHHHHHHHhcCCCCC--------CcEEEEEecCCCC-----CCChhhhCCCCcc
Q 007575 429 FIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSN--------SAVIVLGATNRSD-----VLDPALRRPGRFD 495 (597)
Q Consensus 429 fIDEIDaL~~~r~~~~~~~~~~e~eqtLnqLL~emdg~~~~--------~~VIVIaaTNrpd-----~LD~aLlRpgRFd 495 (597)
||||||.....+. +....-..+.|++. ..++... .++.+|||+|+|. .|+++++| ||
T Consensus 1341 FiDEinmp~~d~y------g~q~~lelLRq~le-~gg~yd~~~~~~~~~~~i~lIaA~Npp~~gGR~~l~~rllR--rf- 1410 (2695)
T 4akg_A 1341 FCDEINLPKLDKY------GSQNVVLFLRQLME-KQGFWKTPENKWVTIERIHIVGACNPPTDPGRIPMSERFTR--HA- 1410 (2695)
T ss_dssp EEETTTCSCCCSS------SCCHHHHHHHHHHH-TSSEECTTTCCEEEEESEEEEEEECCTTSTTCCCCCHHHHT--TE-
T ss_pred Eeccccccccccc------CchhHHHHHHHHHh-cCCEEEcCCCcEEEecCEEEEEecCCCccCCCccCChhhhh--ee-
Confidence 9999987443321 12233445556552 3332211 3589999999994 89999999 99
Q ss_pred eEEEecCCCHHHHHHHHHHHHhcCCCCCCCCCC--HHHHH-----------Hh-------CCCCCHHHHHHHHHHHHH
Q 007575 496 RVVMVETPDKIGREAILKVHVSKKELPLAKDID--LGDIA-----------SM-------TTGFTGADLANLVNEAAL 553 (597)
Q Consensus 496 ~~I~v~~Pd~~eR~eILk~~l~~~~~~l~~dvd--l~~LA-----------~~-------t~G~SgaDL~~Lv~eAal 553 (597)
..+.++.|+.+++..|+..++... +...+++. .+.|+ .. -.-|+.+||.++++-...
T Consensus 1411 ~vi~i~~P~~~~l~~I~~~il~~~-l~~~~~v~~~~~~lv~ati~~y~~v~~~~~~~~k~HY~FnlRDLsrv~qGll~ 1487 (2695)
T 4akg_A 1411 AILYLGYPSGKSLSQIYEIYYKAI-FKLVPEFRSYTEPFARASVHLYNECKARYSTGLQSHYLFSPRELTRLVRGVYT 1487 (2695)
T ss_dssp EEEECCCCTTTHHHHHHHHHHHHH-TTSSGGGGGGHHHHHHHHHHHHHHHHHHSCTTTCTTCCCCHHHHHHHHHHHHH
T ss_pred eEEEeCCCCHHHHHHHHHHHHHHH-hccCHHHHHHHHHHHHHHHHHHHHHHHHcCCccCCCcccCHHHHHHHHHHHHh
Confidence 689999999999999999888642 22222221 11111 11 124788999998876443
No 90
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=99.18 E-value=7.3e-11 Score=111.41 Aligned_cols=133 Identities=16% Similarity=0.177 Sum_probs=80.0
Q ss_pred CCcccccccCCh-HHHHHHHHHHHHhcChhHHhhcCCCCCCceEEeCCCCChHHHHHHHHHHhc----CCCeeeechhhh
Q 007575 327 DTITFADVAGVD-EAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEA----EVPFISCSASEF 401 (597)
Q Consensus 327 ~~vtf~dV~G~d-e~k~~L~eiv~~l~~p~~~~~lg~~~p~gVLL~GPPGTGKT~LArAIA~el----~~pfi~is~sef 401 (597)
...+|+++++.+ +.++.+..+.+++.+. ....+.+++|+||||||||+|++++++++ |..++.+++.++
T Consensus 5 ~~~~f~~~~~~~~~~~~~~~~~~~~~~~~------~~~~g~~~~l~G~~G~GKTtL~~~i~~~~~~~~g~~~~~~~~~~~ 78 (180)
T 3ec2_A 5 WNANLDTYHPKNVSQNRALLTIRVFVHNF------NPEEGKGLTFVGSPGVGKTHLAVATLKAIYEKKGIRGYFFDTKDL 78 (180)
T ss_dssp TTCCSSSCCCCSHHHHHHHHHHHHHHHSC------CGGGCCEEEECCSSSSSHHHHHHHHHHHHHHHSCCCCCEEEHHHH
T ss_pred hhCccccccCCCHHHHHHHHHHHHHHHhc------cccCCCEEEEECCCCCCHHHHHHHHHHHHHHHcCCeEEEEEHHHH
Confidence 356888888743 3444444444444332 12235689999999999999999999876 678888888887
Q ss_pred HHHHhhcchH-HHHHHHHHHHhcCCeEEEEcCcchhhhhcCCcccccchhHHHHHHHHHHHHhcCCCCCCcEEEEEecCC
Q 007575 402 VELYVGMGAS-RVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATNR 480 (597)
Q Consensus 402 ~~~~vG~~e~-~vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~eqtLnqLL~emdg~~~~~~VIVIaaTNr 480 (597)
...+...... ....+++.. ..|.+|+|||++... .+......+.+++.... ..+..+|.+||.
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~--~~~~llilDE~~~~~----------~~~~~~~~l~~ll~~~~----~~~~~ii~tsn~ 142 (180)
T 3ec2_A 79 IFRLKHLMDEGKDTKFLKTV--LNSPVLVLDDLGSER----------LSDWQRELISYIITYRY----NNLKSTIITTNY 142 (180)
T ss_dssp HHHHHHHHHHTCCSHHHHHH--HTCSEEEEETCSSSC----------CCHHHHHHHHHHHHHHH----HTTCEEEEECCC
T ss_pred HHHHHHHhcCchHHHHHHHh--cCCCEEEEeCCCCCc----------CCHHHHHHHHHHHHHHH----HcCCCEEEEcCC
Confidence 6654321110 011222222 257799999998542 12233445555555442 123456667776
Q ss_pred C
Q 007575 481 S 481 (597)
Q Consensus 481 p 481 (597)
+
T Consensus 143 ~ 143 (180)
T 3ec2_A 143 S 143 (180)
T ss_dssp C
T ss_pred C
Confidence 5
No 91
>3aji_B S6C, proteasome (prosome, macropain) 26S subunit, ATPA; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dwz_B* 2dvw_B*
Probab=99.11 E-value=1.7e-10 Score=96.70 Aligned_cols=75 Identities=28% Similarity=0.414 Sum_probs=67.4
Q ss_pred CHHHHHHHHHHHHhcCCCCCCCCCCHHHHHHhCCCCCHHHHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHhcccc
Q 007575 504 DKIGREAILKVHVSKKELPLAKDIDLGDIASMTTGFTGADLANLVNEAALLAGRLNKVVVEKIDFIHAVERSIAVSL 580 (597)
Q Consensus 504 d~~eR~eILk~~l~~~~~~l~~dvdl~~LA~~t~G~SgaDL~~Lv~eAal~A~r~~~~~It~~d~~~Al~~v~~g~~ 580 (597)
|.++|.+||+.|+++ .++.++++++.||..|+||||+||.++|++|++.|.+++...|+++||..|++++.++..
T Consensus 2 d~~~R~~Il~~~l~~--~~~~~~vdl~~la~~t~G~SGADi~~l~~eA~~~a~~~~~~~i~~~df~~Al~~~~ps~~ 76 (83)
T 3aji_B 2 DRRQKRLIFSTITSK--MNLSEEVDLEDYVARPDKISGADINSICQESGMLAVRENRYIVLAKDFEKAYKTVIKKDE 76 (83)
T ss_dssp CHHHHHHHHHHHHTT--SCBCTTCCTHHHHTSSCCCCHHHHHHHHHHHHHGGGTSCCSSBCHHHHHHHHHHHCC---
T ss_pred CHHHHHHHHHHHhCC--CCCCcccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhccCCcCHHHHHHHHHHHccCch
Confidence 678999999999975 466688999999999999999999999999999999999999999999999999987754
No 92
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=99.06 E-value=2.3e-10 Score=109.65 Aligned_cols=104 Identities=21% Similarity=0.267 Sum_probs=65.9
Q ss_pred CCcccccccCChH-HHHHHHHHHHHhcChhHHhhcCCCCCCceEEeCCCCChHHHHHHHHHHhc---CCCeeeechhhhH
Q 007575 327 DTITFADVAGVDE-AKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEA---EVPFISCSASEFV 402 (597)
Q Consensus 327 ~~vtf~dV~G~de-~k~~L~eiv~~l~~p~~~~~lg~~~p~gVLL~GPPGTGKT~LArAIA~el---~~pfi~is~sef~ 402 (597)
...+|+++++.+. .++.+..+..++..... ...+.+++|+||||||||+||++++.++ +.+++.++++++.
T Consensus 20 ~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~l~G~~GtGKT~la~~i~~~~~~~~~~~~~~~~~~~~ 94 (202)
T 2w58_A 20 LRASLSDVDLNDDGRIKAIRFAERFVAEYEP-----GKKMKGLYLHGSFGVGKTYLLAAIANELAKRNVSSLIVYVPELF 94 (202)
T ss_dssp GCCCTTSSCCSSHHHHHHHHHHHHHHHHCCS-----SCCCCEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEEEHHHHH
T ss_pred HcCCHhhccCCChhHHHHHHHHHHHHHHhhh-----ccCCCeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEhHHHH
Confidence 3568999998763 33333434443332110 1134789999999999999999999877 6788889998876
Q ss_pred HHHhhcc-hHHHHHHHHHHHhcCCeEEEEcCcchhh
Q 007575 403 ELYVGMG-ASRVRDLFARAKKEAPSIIFIDEIDAVA 437 (597)
Q Consensus 403 ~~~vG~~-e~~vr~lF~~A~~~aP~ILfIDEIDaL~ 437 (597)
..+.... ...+..++..... +.+|+|||++...
T Consensus 95 ~~~~~~~~~~~~~~~~~~~~~--~~~lilDei~~~~ 128 (202)
T 2w58_A 95 RELKHSLQDQTMNEKLDYIKK--VPVLMLDDLGAEA 128 (202)
T ss_dssp HHHHHC---CCCHHHHHHHHH--SSEEEEEEECCC-
T ss_pred HHHHHHhccchHHHHHHHhcC--CCEEEEcCCCCCc
Confidence 6543211 1112333433332 3599999997754
No 93
>3f8t_A Predicted ATPase involved in replication control, CDC46/MCM family; helicase, MCM homolog, DNA replication, ATP-binding, DNA-binding; 1.90A {Methanopyrus kandleri AV19}
Probab=99.02 E-value=6.7e-10 Score=121.08 Aligned_cols=215 Identities=19% Similarity=0.114 Sum_probs=126.8
Q ss_pred ccCChHHHHHHHHHHHHhcChhHHhhcCCCCCCceEEeCCCCChHHHHHHHH-HHhcCCCeeee-chhhhHHHHhhc---
Q 007575 334 VAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAV-AGEAEVPFISC-SASEFVELYVGM--- 408 (597)
Q Consensus 334 V~G~de~k~~L~eiv~~l~~p~~~~~lg~~~p~gVLL~GPPGTGKT~LArAI-A~el~~pfi~i-s~sef~~~~vG~--- 408 (597)
|.|++++|..|.-.+---.. + .+..-+|||.|+||| ||+||+++ +.-+....+.. .++.... ..+.
T Consensus 215 I~G~e~vK~aLll~L~GG~~--k-----~rgdihVLL~G~PGt-KS~Lar~i~~~i~pR~~ft~g~~ss~~g-Lt~s~r~ 285 (506)
T 3f8t_A 215 LPGAEEVGKMLALQLFSCVG--K-----NSERLHVLLAGYPVV-CSEILHHVLDHLAPRGVYVDLRRTELTD-LTAVLKE 285 (506)
T ss_dssp STTCHHHHHHHHHHHTTCCS--S-----GGGCCCEEEESCHHH-HHHHHHHHHHHTCSSEEEEEGGGCCHHH-HSEEEEE
T ss_pred cCCCHHHHHHHHHHHcCCcc--c-----cCCceeEEEECCCCh-HHHHHHHHHHHhCCCeEEecCCCCCccC-ceEEEEc
Confidence 78999987766554421100 0 122337999999999 99999999 77654333221 1111100 0000
Q ss_pred --chHHHHHHHHHHHhcCCeEEEEcCcchhhhhcCCcccccchhHHHHHHHHHHHHhcCC-------CCCCcEEEEEecC
Q 007575 409 --GASRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGF-------DSNSAVIVLGATN 479 (597)
Q Consensus 409 --~e~~vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~eqtLnqLL~emdg~-------~~~~~VIVIaaTN 479 (597)
+...-...+..|..+ |+|||||+.+.. .+...|+..|+.- .-+..+.||||+|
T Consensus 286 ~tG~~~~~G~l~LAdgG---vl~lDEIn~~~~---------------~~qsaLlEaMEe~~VtI~G~~lparf~VIAA~N 347 (506)
T 3f8t_A 286 DRGWALRAGAAVLADGG---ILAVDHLEGAPE---------------PHRWALMEAMDKGTVTVDGIALNARCAVLAAIN 347 (506)
T ss_dssp SSSEEEEECHHHHTTTS---EEEEECCTTCCH---------------HHHHHHHHHHHHSEEEETTEEEECCCEEEEEEC
T ss_pred CCCcccCCCeeEEcCCC---eeehHhhhhCCH---------------HHHHHHHHHHhCCcEEECCEEcCCCeEEEEEeC
Confidence 000001223344444 999999998753 3445666666521 1245689999999
Q ss_pred CCC-----------CCChhhhCCCCcceEEEe-cCCCHHHH---------HHHHHHH---Hh--cCCCCCCCCCCHHHHH
Q 007575 480 RSD-----------VLDPALRRPGRFDRVVMV-ETPDKIGR---------EAILKVH---VS--KKELPLAKDIDLGDIA 533 (597)
Q Consensus 480 rpd-----------~LD~aLlRpgRFd~~I~v-~~Pd~~eR---------~eILk~~---l~--~~~~~l~~dvdl~~LA 533 (597)
..+ .|+++++. |||..+.+ +.|+.+.- .+.++.+ ++ .....+.+++ .+.|.
T Consensus 348 P~~~yd~~~s~~~~~Lp~alLD--RFDLi~i~~d~pd~e~d~e~~~~~ls~e~L~~yi~~ar~~~~~p~ls~ea-~~yI~ 424 (506)
T 3f8t_A 348 PGEQWPSDPPIARIDLDQDFLS--HFDLIAFLGVDPRPGEPEEQDTEVPSYTLLRRYLLYAIREHPAPELTEEA-RKRLE 424 (506)
T ss_dssp CCC--CCSCGGGGCCSCHHHHT--TCSEEEETTC--------------CCHHHHHHHHHHHHHHCSCCEECHHH-HHHHH
T ss_pred cccccCCCCCccccCCChHHhh--heeeEEEecCCCChhHhhcccCCCCCHHHHHHHHHHHHhcCCCceeCHHH-HHHHH
Confidence 865 78899999 99976543 45543321 1222222 22 1122232221 11111
Q ss_pred ------H-----------hCCCCCHHHHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHhcc
Q 007575 534 ------S-----------MTTGFTGADLANLVNEAALLAGRLNKVVVEKIDFIHAVERSIAV 578 (597)
Q Consensus 534 ------~-----------~t~G~SgaDL~~Lv~eAal~A~r~~~~~It~~d~~~Al~~v~~g 578 (597)
+ ...|.|++.+..+++-|...|..+++..|+.+|+.+|++-+...
T Consensus 425 ~~y~~tR~~~~~~~~~~~~~~giSpR~leaLiRlA~A~A~L~gR~~V~~eDV~~Ai~L~~~S 486 (506)
T 3f8t_A 425 HWYETRREEVEERLGMGLPTLPVTRRQLESVERLAKAHARMRLSDDVEPEDVDIAAELVDWY 486 (506)
T ss_dssp HHHHHHHHHHHHHHHTTCCCCCCCHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHHHHH
T ss_pred HHHHHHhcCcccccccccccccccHHHHHHHHHHHHHHHHHcCcCCCCHHHHHHHHHHHHHH
Confidence 0 24578999999999999999999999999999999998765443
No 94
>3dzd_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; HET: ADP; 2.40A {Aquifex aeolicus} PDB: 1zit_A 2jrl_A
Probab=99.01 E-value=7.1e-10 Score=117.70 Aligned_cols=192 Identities=18% Similarity=0.270 Sum_probs=116.7
Q ss_pred ccccCChHHHHHHHHHHHHhcChhHHhhcCCCCCCceEEeCCCCChHHHHHHHHHHhcCC--CeeeechhhhHHH-----
Q 007575 332 ADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEV--PFISCSASEFVEL----- 404 (597)
Q Consensus 332 ~dV~G~de~k~~L~eiv~~l~~p~~~~~lg~~~p~gVLL~GPPGTGKT~LArAIA~el~~--pfi~is~sef~~~----- 404 (597)
.+++|......++.+.+..+.. ....+|++|++||||+++|+++....+. +|+.++|..+.+.
T Consensus 129 ~~~ig~s~~~~~~~~~~~~~a~----------~~~~vli~GesGtGKe~lAr~ih~~s~r~~~fv~vnc~~~~~~~~~~~ 198 (368)
T 3dzd_A 129 IEFVGEHPKILEIKRLIPKIAK----------SKAPVLITGESGTGKEIVARLIHRYSGRKGAFVDLNCASIPQELAESE 198 (368)
T ss_dssp CCCCCCSHHHHHHHHHHHHHHT----------SCSCEEEECCTTSSHHHHHHHHHHHHCCCSCEEEEESSSSCTTTHHHH
T ss_pred ccccccchHHHHHHhhhhhhhc----------cchhheEEeCCCchHHHHHHHHHHhccccCCcEEEEcccCChHHHHHH
Confidence 3578888888888777765432 2335999999999999999999876643 3999999865321
Q ss_pred Hhhcch-------HHHHHHHHHHHhcCCeEEEEcCcchhhhhcCCcccccchhHHHHHHHHHHHHhcCC-----CC----
Q 007575 405 YVGMGA-------SRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGF-----DS---- 468 (597)
Q Consensus 405 ~vG~~e-------~~vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~eqtLnqLL~emdg~-----~~---- 468 (597)
..|... ......|+.|..+ +||||||+.+.... ...|+..|+.- .+
T Consensus 199 lfg~~~g~~tga~~~~~g~~~~a~~g---tlfldei~~l~~~~---------------Q~~Ll~~l~~~~~~~~g~~~~~ 260 (368)
T 3dzd_A 199 LFGHEKGAFTGALTRKKGKLELADQG---TLFLDEVGELDQRV---------------QAKLLRVLETGSFTRLGGNQKI 260 (368)
T ss_dssp HHEECSCSSSSCCCCEECHHHHTTTS---EEEEETGGGSCHHH---------------HHHHHHHHHHSEECCBTCCCBE
T ss_pred hcCccccccCCcccccCChHhhcCCC---eEEecChhhCCHHH---------------HHHHHHHHHhCCcccCCCCcce
Confidence 222110 1112356666554 99999999986442 24455555421 11
Q ss_pred CCcEEEEEecCCC-------CCCChhhhCCCCcceEEEecCCCHHHH----HHHHHHHHhc----CCCC---CCCCCCHH
Q 007575 469 NSAVIVLGATNRS-------DVLDPALRRPGRFDRVVMVETPDKIGR----EAILKVHVSK----KELP---LAKDIDLG 530 (597)
Q Consensus 469 ~~~VIVIaaTNrp-------d~LD~aLlRpgRFd~~I~v~~Pd~~eR----~eILk~~l~~----~~~~---l~~dvdl~ 530 (597)
...+.+|+|||+. ..+.+.|.. |+. .+.+..|...+| ..++..++.+ .+.+ +.++ .++
T Consensus 261 ~~~~rii~at~~~l~~~v~~g~fr~dL~~--rl~-~~~i~lPpLreR~~Di~~l~~~~l~~~~~~~~~~~~~~~~~-a~~ 336 (368)
T 3dzd_A 261 EVDIRVISATNKNLEEEIKKGNFREDLYY--RLS-VFQIYLPPLRERGKDVILLAEYFLKKFAKEYKKNCFELSEE-TKE 336 (368)
T ss_dssp ECCCEEEEEESSCHHHHHHTTSSCHHHHH--HHT-SEEEECCCGGGSTTHHHHHHHHHHHHHHHHTTCCCCCBCHH-HHH
T ss_pred eeeeEEEEecCCCHHHHHHcCCccHHHHH--HhC-CeEEeCCChhhchhhHHHHHHHHHHHHHHHcCCCCCCcCHH-HHH
Confidence 1256789999964 122333333 332 455556665554 3444444432 2211 2222 255
Q ss_pred HHHHhCCCCCHHHHHHHHHHHHHHH
Q 007575 531 DIASMTTGFTGADLANLVNEAALLA 555 (597)
Q Consensus 531 ~LA~~t~G~SgaDL~~Lv~eAal~A 555 (597)
.|..+.+.-+.++|.|++.+|+..+
T Consensus 337 ~L~~~~wpGNvreL~n~i~~~~~~~ 361 (368)
T 3dzd_A 337 YLMKQEWKGNVRELKNLIERAVILC 361 (368)
T ss_dssp HHHTCCCTTHHHHHHHHHHHHHHTC
T ss_pred HHHhCCCCcHHHHHHHHHHHHHHhC
Confidence 6666665556799999999998765
No 95
>2dzn_B 26S protease regulatory subunit 6B homolog; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} PDB: 2dzo_B
Probab=98.99 E-value=1.2e-10 Score=97.73 Aligned_cols=75 Identities=27% Similarity=0.361 Sum_probs=53.8
Q ss_pred HHHHHHHHHHHhcCCCCCCCCCCHHHHHHhCCCCCHHHHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHhcccccc
Q 007575 506 IGREAILKVHVSKKELPLAKDIDLGDIASMTTGFTGADLANLVNEAALLAGRLNKVVVEKIDFIHAVERSIAVSLSL 582 (597)
Q Consensus 506 ~eR~eILk~~l~~~~~~l~~dvdl~~LA~~t~G~SgaDL~~Lv~eAal~A~r~~~~~It~~d~~~Al~~v~~g~~k~ 582 (597)
++|.+||+.|+++ +++.+++|++.||..|+||||+||.++|++|++.|.+++...|+++||..|++++..+....
T Consensus 1 ~~R~~Il~~~l~~--~~~~~~vdl~~lA~~t~G~SGADi~~l~~eAa~~ai~~~~~~i~~~df~~Al~~v~~~~~~~ 75 (82)
T 2dzn_B 1 MERRLIFGTIASK--MSLAPEADLDSLIIRNDSLSGAVIAAIMQEAGLRAVRKNRYVILQSDLEEAYATQVKTDNTV 75 (82)
T ss_dssp ---------------CEECTTCCSTTTTTSSCCCCHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHTTCC-----
T ss_pred CHHHHHHHHHHcC--CCCCCcCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhccCCcCHHHHHHHHHHHHcCcCCh
Confidence 4789999999965 46677899999999999999999999999999999999999999999999999998776543
No 96
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=98.98 E-value=2.1e-08 Score=102.76 Aligned_cols=186 Identities=17% Similarity=0.183 Sum_probs=113.5
Q ss_pred cccccccCChHHHHHHHHHHHHhcChhHHhhcCCCCCCceEEeCCCCChHHHHHHHHHHhcCCCeeeechhhh-------
Q 007575 329 ITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEF------- 401 (597)
Q Consensus 329 vtf~dV~G~de~k~~L~eiv~~l~~p~~~~~lg~~~p~gVLL~GPPGTGKT~LArAIA~el~~pfi~is~sef------- 401 (597)
...+.++|.++..+.|.+ +. . ..++|+||+|+|||+|++.++++++.+++.+++...
T Consensus 10 ~~~~~~~gR~~el~~L~~-l~---~------------~~v~i~G~~G~GKT~L~~~~~~~~~~~~~~~~~~~~~~~~~~~ 73 (357)
T 2fna_A 10 DNRKDFFDREKEIEKLKG-LR---A------------PITLVLGLRRTGKSSIIKIGINELNLPYIYLDLRKFEERNYIS 73 (357)
T ss_dssp CSGGGSCCCHHHHHHHHH-TC---S------------SEEEEEESTTSSHHHHHHHHHHHHTCCEEEEEGGGGTTCSCCC
T ss_pred CCHHHhcChHHHHHHHHH-hc---C------------CcEEEECCCCCCHHHHHHHHHHhcCCCEEEEEchhhccccCCC
Confidence 445678999887666665 42 1 379999999999999999999988767777766532
Q ss_pred ----HHHHh---------------------h-------c-------chHHHHHHHHHHHhc--CCeEEEEcCcchhhhhc
Q 007575 402 ----VELYV---------------------G-------M-------GASRVRDLFARAKKE--APSIIFIDEIDAVAKSR 440 (597)
Q Consensus 402 ----~~~~v---------------------G-------~-------~e~~vr~lF~~A~~~--aP~ILfIDEIDaL~~~r 440 (597)
..... + . ....+..+++..... .|.+|+|||+|.+....
T Consensus 74 ~~~~~~~l~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~vlvlDe~~~~~~~~ 153 (357)
T 2fna_A 74 YKDFLLELQKEINKLVKRLPSLLKALKNIQGIVIMGNEIKFNWNRKDRLSFANLLESFEQASKDNVIIVLDEAQELVKLR 153 (357)
T ss_dssp HHHHHHHHHHHHHHHHHHCTTHHHHTTTSTTEEECSSSEEEC-----CCCHHHHHHHHHHTCSSCEEEEEETGGGGGGCT
T ss_pred HHHHHHHHHHHHHHHhhhhhHHHHHhcccceEEecceEEEeccCCcchhhHHHHHHHHHhcCCCCeEEEEECHHHhhccC
Confidence 11100 0 0 012344555555442 38999999999986421
Q ss_pred CCcccccchhHHHHHHHHHHHHhcCCCCCCcEEEEEecCCCCCCC---------hhhhCCCCcceEEEecCCCHHHHHHH
Q 007575 441 DGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATNRSDVLD---------PALRRPGRFDRVVMVETPDKIGREAI 511 (597)
Q Consensus 441 ~~~~~~~~~~e~eqtLnqLL~emdg~~~~~~VIVIaaTNrpd~LD---------~aLlRpgRFd~~I~v~~Pd~~eR~eI 511 (597)
.. .....+..+... . .++.+|.++.....+. ..+ .||+...+.+.+.+.++..++
T Consensus 154 ~~--------~~~~~l~~~~~~---~---~~~~~i~~g~~~~~l~~~l~~~~~~~~l--~~r~~~~i~l~~l~~~e~~~~ 217 (357)
T 2fna_A 154 GV--------NLLPALAYAYDN---L---KRIKFIMSGSEMGLLYDYLRVEDPESPL--FGRAFSTVELKPFSREEAIEF 217 (357)
T ss_dssp TC--------CCHHHHHHHHHH---C---TTEEEEEEESSHHHHHHHTTTTCTTSTT--TTCCCEEEEECCCCHHHHHHH
T ss_pred ch--------hHHHHHHHHHHc---C---CCeEEEEEcCchHHHHHHHhccCCCCcc--ccCccceeecCCCCHHHHHHH
Confidence 11 012233333322 1 2455555554321111 112 246667899999999999999
Q ss_pred HHHHHhcCCCCCCCCCCHHHHHHhCCCCCHHHHHHHHHH
Q 007575 512 LKVHVSKKELPLAKDIDLGDIASMTTGFTGADLANLVNE 550 (597)
Q Consensus 512 Lk~~l~~~~~~l~~dvdl~~LA~~t~G~SgaDL~~Lv~e 550 (597)
+...+...+.... +...+...+.|+ +.-+..++..
T Consensus 218 l~~~~~~~~~~~~---~~~~i~~~t~G~-P~~l~~~~~~ 252 (357)
T 2fna_A 218 LRRGFQEADIDFK---DYEVVYEKIGGI-PGWLTYFGFI 252 (357)
T ss_dssp HHHHHHHHTCCCC---CHHHHHHHHCSC-HHHHHHHHHH
T ss_pred HHHHHHHcCCCCC---cHHHHHHHhCCC-HHHHHHHHHH
Confidence 9987754333332 247888888885 5455555443
No 97
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=98.96 E-value=5.7e-08 Score=99.41 Aligned_cols=190 Identities=19% Similarity=0.197 Sum_probs=112.8
Q ss_pred cccccccCChHHHHHHHHHHHHhcChhHHhhcCCCCCCceEEeCCCCChHHHHHHHHHHhcCCCeeeechhhhH------
Q 007575 329 ITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFV------ 402 (597)
Q Consensus 329 vtf~dV~G~de~k~~L~eiv~~l~~p~~~~~lg~~~p~gVLL~GPPGTGKT~LArAIA~el~~pfi~is~sef~------ 402 (597)
..-+.++|.++..+.|.+.+.. | ..++|+||+|+|||+|++.++++.+ ++.+++....
T Consensus 9 ~~~~~~~gR~~el~~L~~~l~~----------~----~~v~i~G~~G~GKT~Ll~~~~~~~~--~~~~~~~~~~~~~~~~ 72 (350)
T 2qen_A 9 TRREDIFDREEESRKLEESLEN----------Y----PLTLLLGIRRVGKSSLLRAFLNERP--GILIDCRELYAERGHI 72 (350)
T ss_dssp CSGGGSCSCHHHHHHHHHHHHH----------C----SEEEEECCTTSSHHHHHHHHHHHSS--EEEEEHHHHHHTTTCB
T ss_pred CChHhcCChHHHHHHHHHHHhc----------C----CeEEEECCCcCCHHHHHHHHHHHcC--cEEEEeecccccccCC
Confidence 3456789999988888777652 1 4799999999999999999999876 5566554321
Q ss_pred ------HHHh--------------------hcc----hHHHHHHHHHH----HhcCCeEEEEcCcchhhhhcCCcccccc
Q 007575 403 ------ELYV--------------------GMG----ASRVRDLFARA----KKEAPSIIFIDEIDAVAKSRDGRFRIVS 448 (597)
Q Consensus 403 ------~~~v--------------------G~~----e~~vr~lF~~A----~~~aP~ILfIDEIDaL~~~r~~~~~~~~ 448 (597)
..+. +.. ...+.++++.. ....|.+|+|||+|.+..... ..
T Consensus 73 ~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~vlvlDe~~~~~~~~~-----~~ 147 (350)
T 2qen_A 73 TREELIKELQSTISPFQKFQSKFKISLNLKFLTLEPRKLSLREVFRELNDLGEELGEFIVAFDEAQYLRFYGS-----RG 147 (350)
T ss_dssp CHHHHHHHHHHHSCSHHHHHHHHTCCCCCGGGTSCGGGCCHHHHHHHHHHHHHHHSCEEEEEETGGGGGGBTT-----TT
T ss_pred CHHHHHHHHHHHHHHHHhHhhhceeEEEecceeeccccchHHHHHHHHHHHHhccCCEEEEEeCHHHHhccCc-----cc
Confidence 1110 000 11223333322 222489999999999864100 00
Q ss_pred hhHHHHHHHHHHHHhcCCCCCCcEEEEEecCCCCCC---------ChhhhCCCCcceEEEecCCCHHHHHHHHHHHHhcC
Q 007575 449 NDEREQTLNQLLTEMDGFDSNSAVIVLGATNRSDVL---------DPALRRPGRFDRVVMVETPDKIGREAILKVHVSKK 519 (597)
Q Consensus 449 ~~e~eqtLnqLL~emdg~~~~~~VIVIaaTNrpd~L---------D~aLlRpgRFd~~I~v~~Pd~~eR~eILk~~l~~~ 519 (597)
.......+..+ ++.. .++.+|.++.....+ ...+ .||+...+.+.+.+.++..++++..+...
T Consensus 148 ~~~~~~~L~~~---~~~~---~~~~~il~g~~~~~l~~~l~~~~~~~~l--~~~~~~~i~l~pl~~~e~~~~l~~~~~~~ 219 (350)
T 2qen_A 148 GKELLALFAYA---YDSL---PNLKIILTGSEVGLLHDFLKITDYESPL--YGRIAGEVLVKPFDKDTSVEFLKRGFREV 219 (350)
T ss_dssp THHHHHHHHHH---HHHC---TTEEEEEEESSHHHHHHHHCTTCTTSTT--TTCCCEEEECCCCCHHHHHHHHHHHHHTT
T ss_pred hhhHHHHHHHH---HHhc---CCeEEEEECCcHHHHHHHHhhcCCCCcc--ccCccceeeCCCCCHHHHHHHHHHHHHHc
Confidence 11222233333 3322 245555554432111 1122 24666789999999999999999887654
Q ss_pred CCCCCCCCCHHHHHHhCCCCCHHHHHHHHH
Q 007575 520 ELPLAKDIDLGDIASMTTGFTGADLANLVN 549 (597)
Q Consensus 520 ~~~l~~dvdl~~LA~~t~G~SgaDL~~Lv~ 549 (597)
+..+.++ .+..+...+.|+ +.-+..++.
T Consensus 220 ~~~~~~~-~~~~i~~~tgG~-P~~l~~~~~ 247 (350)
T 2qen_A 220 NLDVPEN-EIEEAVELLDGI-PGWLVVFGV 247 (350)
T ss_dssp TCCCCHH-HHHHHHHHHTTC-HHHHHHHHH
T ss_pred CCCCCHH-HHHHHHHHhCCC-HHHHHHHHH
Confidence 4444333 467788888875 444555543
No 98
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=98.82 E-value=6.4e-10 Score=116.15 Aligned_cols=121 Identities=17% Similarity=0.210 Sum_probs=70.2
Q ss_pred CCCCCceEEeCCCCChHHHHHHHHHHhcC--CCeeeechhhhHHHHhhcchHHHHHHHHHHHhcCCeEEEEcCcchhhhh
Q 007575 362 ARPPRGVLLVGLPGTGKTLLAKAVAGEAE--VPFISCSASEFVELYVGMGASRVRDLFARAKKEAPSIIFIDEIDAVAKS 439 (597)
Q Consensus 362 ~~~p~gVLL~GPPGTGKT~LArAIA~el~--~pfi~is~sef~~~~vG~~e~~vr~lF~~A~~~aP~ILfIDEIDaL~~~ 439 (597)
..+...++|+||||||||+||.++|.+.+ +.|+.+...+.+..+....+..+..+++...... +|+|||++.+...
T Consensus 120 i~~gsviLI~GpPGsGKTtLAlqlA~~~G~~VlyIs~~~eE~v~~~~~~le~~l~~i~~~l~~~~--LLVIDsI~aL~~~ 197 (331)
T 2vhj_A 120 RYASGMVIVTGKGNSGKTPLVHALGEALGGKDKYATVRFGEPLSGYNTDFNVFVDDIARAMLQHR--VIVIDSLKNVIGA 197 (331)
T ss_dssp EEESEEEEEECSCSSSHHHHHHHHHHHHHTTSCCEEEEBSCSSTTCBCCHHHHHHHHHHHHHHCS--EEEEECCTTTC--
T ss_pred CCCCcEEEEEcCCCCCHHHHHHHHHHhCCCCEEEEEecchhhhhhhhcCHHHHHHHHHHHHhhCC--EEEEecccccccc
Confidence 33445579999999999999999998654 4455552233222222333445555555555544 9999999999654
Q ss_pred cCCcccccchhHHHHHHHHHHHHhcCCCCCCcEEEEEecCCCCCCChhh
Q 007575 440 RDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATNRSDVLDPAL 488 (597)
Q Consensus 440 r~~~~~~~~~~e~eqtLnqLL~emdg~~~~~~VIVIaaTNrpd~LD~aL 488 (597)
..... ......+.+.+++..|.++....++.+|+++| +...|+++
T Consensus 198 ~~~~s---~~G~v~~~lrqlL~~L~~~~k~~gvtVIlttn-p~s~deal 242 (331)
T 2vhj_A 198 AGGNT---TSGGISRGAFDLLSDIGAMAASRGCVVIASLN-PTSNDDKI 242 (331)
T ss_dssp ------------CCHHHHHHHHHHHHHHHHHTCEEEEECC-CSSCSSSH
T ss_pred ccccc---ccchHHHHHHHHHHHHHHHHhhCCCEEEEEeC-CcccchhH
Confidence 32210 00111344555555555444445678888888 55555554
No 99
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=98.81 E-value=4.1e-09 Score=109.14 Aligned_cols=102 Identities=22% Similarity=0.281 Sum_probs=62.8
Q ss_pred CcccccccCChH-HHHHHHHHHHHhcChhHHhhcCCCCCCceEEeCCCCChHHHHHHHHHHhc----CCCeeeechhhhH
Q 007575 328 TITFADVAGVDE-AKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEA----EVPFISCSASEFV 402 (597)
Q Consensus 328 ~vtf~dV~G~de-~k~~L~eiv~~l~~p~~~~~lg~~~p~gVLL~GPPGTGKT~LArAIA~el----~~pfi~is~sef~ 402 (597)
..+|+++.+.+. ....+..+..++... +...+.+++|+||||||||+||+++|.++ +.+++.+++++++
T Consensus 120 ~~tfd~f~~~~~~~~~~~~~~~~~i~~~------~~~~~~~lll~G~~GtGKT~La~aia~~~~~~~g~~v~~~~~~~l~ 193 (308)
T 2qgz_A 120 HIHLSDIDVNNASRMEAFSAILDFVEQY------PSAEQKGLYLYGDMGIGKSYLLAAMAHELSEKKGVSTTLLHFPSFA 193 (308)
T ss_dssp SCCGGGSCCCSHHHHHHHHHHHHHHHHC------SCSSCCEEEEECSTTSSHHHHHHHHHHHHHHHSCCCEEEEEHHHHH
T ss_pred hCCHhhCcCCChHHHHHHHHHHHHHHhc------cccCCceEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEHHHHH
Confidence 468999887553 223333333443321 11135789999999999999999999855 4888889998887
Q ss_pred HHHhhcc-hHHHHHHHHHHHhcCCeEEEEcCcchhh
Q 007575 403 ELYVGMG-ASRVRDLFARAKKEAPSIIFIDEIDAVA 437 (597)
Q Consensus 403 ~~~vG~~-e~~vr~lF~~A~~~aP~ILfIDEIDaL~ 437 (597)
..+...- ......++.... .+.+|+|||++...
T Consensus 194 ~~l~~~~~~~~~~~~~~~~~--~~~lLiiDdig~~~ 227 (308)
T 2qgz_A 194 IDVKNAISNGSVKEEIDAVK--NVPVLILDDIGAEQ 227 (308)
T ss_dssp HHHHCCCC----CCTTHHHH--TSSEEEEETCCC--
T ss_pred HHHHHHhccchHHHHHHHhc--CCCEEEEcCCCCCC
Confidence 7654321 111222233222 24599999997653
No 100
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=98.79 E-value=1.2e-09 Score=101.47 Aligned_cols=104 Identities=15% Similarity=0.226 Sum_probs=65.3
Q ss_pred CCCceEEeCCCCChHHHHHHHHHHhc---CCCeeeechhhhHHHHhhcchHHHHHHHHHHHhcCCeEEEEcCcchhhhhc
Q 007575 364 PPRGVLLVGLPGTGKTLLAKAVAGEA---EVPFISCSASEFVELYVGMGASRVRDLFARAKKEAPSIIFIDEIDAVAKSR 440 (597)
Q Consensus 364 ~p~gVLL~GPPGTGKT~LArAIA~el---~~pfi~is~sef~~~~vG~~e~~vr~lF~~A~~~aP~ILfIDEIDaL~~~r 440 (597)
....++|+||+|+|||+|++++++.+ |..++.+++.++... +....|.+|+|||++.+....
T Consensus 35 ~g~~~~l~G~~G~GKTtL~~~i~~~~~~~g~~~~~~~~~~~~~~---------------~~~~~~~lLilDE~~~~~~~~ 99 (149)
T 2kjq_A 35 HGQFIYVWGEEGAGKSHLLQAWVAQALEAGKNAAYIDAASMPLT---------------DAAFEAEYLAVDQVEKLGNEE 99 (149)
T ss_dssp CCSEEEEESSSTTTTCHHHHHHHHHHHTTTCCEEEEETTTSCCC---------------GGGGGCSEEEEESTTCCCSHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHhcCCcEEEEcHHHhhHH---------------HHHhCCCEEEEeCccccChHH
Confidence 34579999999999999999999987 777888887765432 112357899999998754221
Q ss_pred CCcccccchhHHHHHHHHHHHHhcCCCCCCc-EEEEEecCCCCCCC--hhhhCCCCcceEEE
Q 007575 441 DGRFRIVSNDEREQTLNQLLTEMDGFDSNSA-VIVLGATNRSDVLD--PALRRPGRFDRVVM 499 (597)
Q Consensus 441 ~~~~~~~~~~e~eqtLnqLL~emdg~~~~~~-VIVIaaTNrpd~LD--~aLlRpgRFd~~I~ 499 (597)
.+.+-+++..+. .... ++||++...|+.+. ++|.+ |+..-..
T Consensus 100 ------------~~~l~~li~~~~---~~g~~~iiits~~~p~~l~~~~~L~S--Rl~~g~~ 144 (149)
T 2kjq_A 100 ------------QALLFSIFNRFR---NSGKGFLLLGSEYTPQQLVIREDLRT--RMAYCLV 144 (149)
T ss_dssp ------------HHHHHHHHHHHH---HHTCCEEEEEESSCTTTSSCCHHHHH--HGGGSEE
T ss_pred ------------HHHHHHHHHHHH---HcCCcEEEEECCCCHHHccccHHHHH--HHhcCee
Confidence 233344444332 1122 35554433454443 77877 6644333
No 101
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=98.70 E-value=1.2e-08 Score=99.46 Aligned_cols=128 Identities=16% Similarity=0.172 Sum_probs=82.3
Q ss_pred CCceEEeCCCCChHHHHHHHHHHh--------cC-CCeeeechhhhHHHHh----------hc-----chHHHHHHHHHH
Q 007575 365 PRGVLLVGLPGTGKTLLAKAVAGE--------AE-VPFISCSASEFVELYV----------GM-----GASRVRDLFARA 420 (597)
Q Consensus 365 p~gVLL~GPPGTGKT~LArAIA~e--------l~-~pfi~is~sef~~~~v----------G~-----~e~~vr~lF~~A 420 (597)
+.-.|++|+||||||++|.+.+.. .| .+++.+++.++..... .. ....+.+++..
T Consensus 5 ~mi~l~tG~pGsGKT~~a~~~~~~~~~~~~~~~g~r~v~~~~~~gL~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~- 83 (199)
T 2r2a_A 5 AEICLITGTPGSGKTLKMVSMMANDEMFKPDENGIRRKVFTNIKGLKIPHTYIETDAKKLPKSTDEQLSAHDMYEWIKK- 83 (199)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHCGGGSCCTTSCCCCEEECCTTBCSCCEEEECCTTTCSSCCSSCEEGGGHHHHTTS-
T ss_pred eeEEEEEeCCCCCHHHHHHHHHHHHHhhcccccCceEEEEecCCCccccccccchhhhhccccCcccccHHHHHHHhhc-
Confidence 446899999999999999886433 35 7777777665532111 11 11222322211
Q ss_pred HhcCCeEEEEcCcchhhhhcCCcccccchhHHHHHHHHHHHHhcCCCCCCcEEEEEecCCCCCCChhhhCCCCcceEEEe
Q 007575 421 KKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATNRSDVLDPALRRPGRFDRVVMV 500 (597)
Q Consensus 421 ~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~eqtLnqLL~emdg~~~~~~VIVIaaTNrpd~LD~aLlRpgRFd~~I~v 500 (597)
.....+||+|||++.+.+.+.... .. ..++..+... ...++-||.+|+.++.|+.++++ |++.++++
T Consensus 84 ~~~~~~vliIDEAq~l~~~~~~~~----e~------~rll~~l~~~-r~~~~~iil~tq~~~~l~~~lr~--ri~~~~~l 150 (199)
T 2r2a_A 84 PENIGSIVIVDEAQDVWPARSAGS----KI------PENVQWLNTH-RHQGIDIFVLTQGPKLLDQNLRT--LVRKHYHI 150 (199)
T ss_dssp GGGTTCEEEETTGGGTSBCCCTTC----CC------CHHHHGGGGT-TTTTCEEEEEESCGGGBCHHHHT--TEEEEEEE
T ss_pred cccCceEEEEEChhhhccCccccc----hh------HHHHHHHHhc-CcCCeEEEEECCCHHHHhHHHHH--HhheEEEE
Confidence 234467999999999976542211 00 2355555532 24456677788889999999988 99999999
Q ss_pred cCCCHH
Q 007575 501 ETPDKI 506 (597)
Q Consensus 501 ~~Pd~~ 506 (597)
..|...
T Consensus 151 ~~~~~~ 156 (199)
T 2r2a_A 151 ASNKMG 156 (199)
T ss_dssp EECSSC
T ss_pred cCcccC
Confidence 886543
No 102
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=98.52 E-value=3.7e-08 Score=105.07 Aligned_cols=119 Identities=18% Similarity=0.118 Sum_probs=78.3
Q ss_pred cCCCCCCceEEeCCCCChHHHHHHHHHHhcCCCeeeechhhhH-HHHhhcchHHHHHHHHHHHhcCCeEEEEcCcchhhh
Q 007575 360 LGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFV-ELYVGMGASRVRDLFARAKKEAPSIIFIDEIDAVAK 438 (597)
Q Consensus 360 lg~~~p~gVLL~GPPGTGKT~LArAIA~el~~pfi~is~sef~-~~~vG~~e~~vr~lF~~A~~~aP~ILfIDEIDaL~~ 438 (597)
++.+.+..++|+||||+|||+|++++++..+..++.+..++-. ..++| .....+++++||++.+..
T Consensus 164 ~~i~~~~~i~l~G~~GsGKSTl~~~l~~~~~g~~~~~~~~~~~~~~~lg-------------~~~q~~~~l~dd~~~~~~ 230 (377)
T 1svm_A 164 YNIPKKRYWLFKGPIDSGKTTLAAALLELCGGKALNVNLPLDRLNFELG-------------VAIDQFLVVFEDVKGTGG 230 (377)
T ss_dssp HCCTTCCEEEEECSTTSSHHHHHHHHHHHHCCEEECCSSCTTTHHHHHG-------------GGTTCSCEEETTCCCSTT
T ss_pred cccCCCCEEEEECCCCCCHHHHHHHHHhhcCCcEEEEeccchhHHHHHH-------------HhcchhHHHHHHHHHHHH
Confidence 4677888999999999999999999999887766654433210 11111 112345789999999875
Q ss_pred -hcCCcccccchhHHHHHHHHHHHHhcCCCCCCcEEEEEecCCCCCCChhhhCCCCcceEEEecC
Q 007575 439 -SRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATNRSDVLDPALRRPGRFDRVVMVET 502 (597)
Q Consensus 439 -~r~~~~~~~~~~e~eqtLnqLL~emdg~~~~~~VIVIaaTNrpd~LD~aLlRpgRFd~~I~v~~ 502 (597)
.++.. .+. .. .....+...++| .+.|+++||+++.+ +++++|||++..+....
T Consensus 231 ~~r~l~--~~~--~~-~~~~~l~~~ldG-----~v~v~~~tn~~~~l-~alf~pg~ld~~~~~l~ 284 (377)
T 1svm_A 231 ESRDLP--SGQ--GI-NNLDNLRDYLDG-----SVKVNLEKKHLNKR-TQIFPPGIVTMNEYSVP 284 (377)
T ss_dssp TTTTCC--CCS--HH-HHHHTTHHHHHC-----SSCEEECCSSSCCE-EECCCCEEEEECSCCCC
T ss_pred HHhhcc--ccC--cc-hHHHHHHHHhcC-----CCeEeeccCchhhH-HHhhcCcccChhHHhhc
Confidence 22210 001 10 123445555665 24577889999999 79999999987665533
No 103
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=98.51 E-value=8.8e-08 Score=119.40 Aligned_cols=119 Identities=19% Similarity=0.195 Sum_probs=79.7
Q ss_pred CCCCCCceEEeCCCCChHHHHHHHHHHhc---CCCeeeechhh----hHHHHhh------------cchHHHHHHHHHHH
Q 007575 361 GARPPRGVLLVGLPGTGKTLLAKAVAGEA---EVPFISCSASE----FVELYVG------------MGASRVRDLFARAK 421 (597)
Q Consensus 361 g~~~p~gVLL~GPPGTGKT~LArAIA~el---~~pfi~is~se----f~~~~vG------------~~e~~vr~lF~~A~ 421 (597)
|..++.+++|+||||||||+||.+++.++ |-....++..+ +.....| .++..++.++..++
T Consensus 1423 Gi~~g~~vll~GppGtGKT~LA~ala~ea~~~G~~v~Fi~~e~~~~~l~a~~~G~dl~~l~v~~~~~~E~~l~~~~~lvr 1502 (2050)
T 3cmu_A 1423 GLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALAR 1502 (2050)
T ss_dssp SEETTSEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEECTTSCCCHHHHHHTTCCTTTCEEECCSSHHHHHHHHHHHHH
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEEcccccCHHHHHHcCCCchhceeecCChHHHHHHHHHHHHh
Confidence 36788899999999999999999998775 33344444332 1122223 34566777777888
Q ss_pred hcCCeEEEEcCcchhhhhcC--CcccccchhHHHHHHHHHHHHhcCCCCCCcEEEEEecC
Q 007575 422 KEAPSIIFIDEIDAVAKSRD--GRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATN 479 (597)
Q Consensus 422 ~~aP~ILfIDEIDaL~~~r~--~~~~~~~~~e~eqtLnqLL~emdg~~~~~~VIVIaaTN 479 (597)
..+|++|||||++++.+... +..........++.++++|.+|.++....+++||++..
T Consensus 1503 ~~~~~lVVIDsi~al~p~~~~~g~~~~~~~~~~~R~lsqlL~~L~~~~~~~~v~VI~tNq 1562 (2050)
T 3cmu_A 1503 SGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQ 1562 (2050)
T ss_dssp HTCCSEEEESCGGGCCCHHHHHSCTTCCCTTHHHHHHHHHHHHHHHHHHTTTCEEEEEEC
T ss_pred cCCCCEEEEcChhHhcccccccccccccccchHHHHHHHHHHHHHHHHHhCCcEEEEEcc
Confidence 89999999999998876431 01000011123567788888888777677777776543
No 104
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=98.51 E-value=2.7e-06 Score=109.19 Aligned_cols=169 Identities=15% Similarity=0.153 Sum_probs=108.3
Q ss_pred CceEEeCCCCChHHHHHHHHHHhcCCCeeeechhhhHHHHhhcchHHHHHHHHHHHhcCCeEEEEcCcchhhhhcCCccc
Q 007575 366 RGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFVELYVGMGASRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFR 445 (597)
Q Consensus 366 ~gVLL~GPPGTGKT~LArAIA~el~~pfi~is~sef~~~~vG~~e~~vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~ 445 (597)
.|+++.||+|||||.+++++|+.+|.+++.++|++-. ..+.+..+|..+.... +.+++||++.+...-
T Consensus 646 ~~~~l~GpaGtGKTe~vk~LA~~lg~~~v~~nc~e~l------d~~~lg~~~~g~~~~G-aw~~~DE~nr~~~ev----- 713 (2695)
T 4akg_A 646 YGGCFFGPAGTGKTETVKAFGQNLGRVVVVFNCDDSF------DYQVLSRLLVGITQIG-AWGCFDEFNRLDEKV----- 713 (2695)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHTTTCCCEEEETTSSC------CHHHHHHHHHHHHHHT-CEEEEETTTSSCHHH-----
T ss_pred CCCcccCCCCCCcHHHHHHHHHHhCCcEEEEECCCCC------ChhHhhHHHHHHHhcC-CEeeehhhhhcChHH-----
Confidence 4789999999999999999999999999999998643 3345566776665543 599999999875321
Q ss_pred ccchhHHHHHHHHHHHHhcC-----------CCCCCcEEEEEecCC----CCCCChhhhCCCCcceEEEecCCCHHHHHH
Q 007575 446 IVSNDEREQTLNQLLTEMDG-----------FDSNSAVIVLGATNR----SDVLDPALRRPGRFDRVVMVETPDKIGREA 510 (597)
Q Consensus 446 ~~~~~e~eqtLnqLL~emdg-----------~~~~~~VIVIaaTNr----pd~LD~aLlRpgRFd~~I~v~~Pd~~eR~e 510 (597)
-....+.+..+...+.. +.-+..+.|++|.|. ...|+++|++ || +.+.+..||.+...+
T Consensus 714 ---Ls~l~~~l~~i~~al~~~~~~i~~~g~~i~l~~~~~vfiT~NPgy~g~~eLP~~Lk~--~F-r~v~m~~Pd~~~i~e 787 (2695)
T 4akg_A 714 ---LSAVSANIQQIQNGLQVGKSHITLLEEETPLSPHTAVFITLNPGYNGRSELPENLKK--SF-REFSMKSPQSGTIAE 787 (2695)
T ss_dssp ---HHHHHHHHHHHHHHHHHTCSEEECSSSEEECCTTCEEEEEECCCSSSSCCCCHHHHT--TE-EEEECCCCCHHHHHH
T ss_pred ---HHHHHHHHHHHHHHHHcCCcEEeeCCcEEecCCCceEEEEeCCCccCcccccHHHHh--he-EEEEeeCCCHHHHHH
Confidence 11111222222232311 111345667778884 3579999998 88 689999999988888
Q ss_pred HHHHHHhcCCCCCCCCC-----CH-HHHHHhC-----CCCCHHHHHHHHHHHHHHH
Q 007575 511 ILKVHVSKKELPLAKDI-----DL-GDIASMT-----TGFTGADLANLVNEAALLA 555 (597)
Q Consensus 511 ILk~~l~~~~~~l~~dv-----dl-~~LA~~t-----~G~SgaDL~~Lv~eAal~A 555 (597)
|+-... +...++.. .+ ..+.... ..|.-+.+..++..|...-
T Consensus 788 i~l~s~---Gf~~a~~la~kiv~~~~l~~e~ls~q~hydfglRalksvL~~ag~lk 840 (2695)
T 4akg_A 788 MILQIM---GFEDSKSLASKIVHFLELLSSKCSSMNHYHFGLRTLKGVLRNCSPLI 840 (2695)
T ss_dssp HHHHHH---HCSSHHHHHHHHHHHHHHHHHHSCCCTTCCCSHHHHHHHHHHHHHHH
T ss_pred HHHHhc---CCCchHHHHHHHHHHHHHHHHHhCcCCcccccHHHHHHHHHHHHHhh
Confidence 754322 11111110 01 1111222 2367788988888776543
No 105
>1jr3_D DNA polymerase III, delta subunit; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1jqj_C* 1xxh_A* 1xxi_A* 3glf_A* 3glg_A* 3glh_A* 3gli_A*
Probab=98.48 E-value=7.7e-07 Score=92.38 Aligned_cols=178 Identities=16% Similarity=0.082 Sum_probs=118.3
Q ss_pred CCCceEEeCCCCChHHHHHHHHHHhc---CC-CeeeechhhhHHHHhhcchHHHHHHHHHHHh----cCCeEEEEcCcch
Q 007575 364 PPRGVLLVGLPGTGKTLLAKAVAGEA---EV-PFISCSASEFVELYVGMGASRVRDLFARAKK----EAPSIIFIDEIDA 435 (597)
Q Consensus 364 ~p~gVLL~GPPGTGKT~LArAIA~el---~~-pfi~is~sef~~~~vG~~e~~vr~lF~~A~~----~aP~ILfIDEIDa 435 (597)
.+..+||+||+|+||+..+++++..+ +. ++..+... +...++++++.+.. ....||+|||+|.
T Consensus 17 ~~~~yl~~G~e~~~~~~~~~~l~~~~~~~~~~~~~~~~~~---------~~~~~~~l~~~~~~~plf~~~kvvii~~~~~ 87 (343)
T 1jr3_D 17 LRAAYLLLGNDPLLLQESQDAVRQVAAAQGFEEHHTFSID---------PNTDWNAIFSLCQAMSLFASRQTLLLLLPEN 87 (343)
T ss_dssp CCSEEEEEESCHHHHHHHHHHHHHHHHHHTCCEEEEEECC---------TTCCHHHHHHHHHHHHHCCSCEEEEEECCSS
T ss_pred CCcEEEEECCcHHHHHHHHHHHHHHHHhCCCCeeEEEEec---------CCCCHHHHHHHhcCcCCccCCeEEEEECCCC
Confidence 45679999999999999999998865 21 22211111 12345566655542 3467999999988
Q ss_pred -hhhhcCCcccccchhHHHHHHHHHHHHhcCCCCCCcEEEEEecCCC------CCCChhhhCCCCcceEEEecCCCHHHH
Q 007575 436 -VAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATNRS------DVLDPALRRPGRFDRVVMVETPDKIGR 508 (597)
Q Consensus 436 -L~~~r~~~~~~~~~~e~eqtLnqLL~emdg~~~~~~VIVIaaTNrp------d~LD~aLlRpgRFd~~I~v~~Pd~~eR 508 (597)
+... ..+.|+..++... ..+++|.+++.+ ..+.+++.+ |. .++.+.+++..+.
T Consensus 88 kl~~~---------------~~~aLl~~le~p~--~~~~~il~~~~~~~~~~~~k~~~~i~s--r~-~~~~~~~l~~~~l 147 (343)
T 1jr3_D 88 GPNAA---------------INEQLLTLTGLLH--DDLLLIVRGNKLSKAQENAAWFTALAN--RS-VQVTCQTPEQAQL 147 (343)
T ss_dssp CCCTT---------------HHHHHHHHHTTCB--TTEEEEEEESCCCTTTTTSHHHHHHTT--TC-EEEEECCCCTTHH
T ss_pred CCChH---------------HHHHHHHHHhcCC--CCeEEEEEcCCCChhhHhhHHHHHHHh--Cc-eEEEeeCCCHHHH
Confidence 6422 3467888887433 334444444433 235567776 55 4789999999999
Q ss_pred HHHHHHHHhcCCCCCCCCCCHHHHHHhCCCCCHHHHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHH
Q 007575 509 EAILKVHVSKKELPLAKDIDLGDIASMTTGFTGADLANLVNEAALLAGRLNKVVVEKIDFIHAVERS 575 (597)
Q Consensus 509 ~eILk~~l~~~~~~l~~dvdl~~LA~~t~G~SgaDL~~Lv~eAal~A~r~~~~~It~~d~~~Al~~v 575 (597)
.+.++..+.+.++.+.++ .++.|+..+.| +.+++.+.++..+..+ +...||.+++++.+...
T Consensus 148 ~~~l~~~~~~~g~~i~~~-a~~~l~~~~~g-dl~~~~~elekl~l~~---~~~~It~e~V~~~~~~~ 209 (343)
T 1jr3_D 148 PRWVAARAKQLNLELDDA-ANQVLCYCYEG-NLLALAQALERLSLLW---PDGKLTLPRVEQAVNDA 209 (343)
T ss_dssp HHHHHHHHHHTTCEECHH-HHHHHHHSSTT-CHHHHHHHHHHHHHHC---TTCEECHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCCCHH-HHHHHHHHhch-HHHHHHHHHHHHHHhc---CCCCCCHHHHHHHHhhh
Confidence 999999998877776655 37778877765 6667777777666554 34478988887765443
No 106
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=98.22 E-value=4.4e-06 Score=108.07 Aligned_cols=137 Identities=19% Similarity=0.251 Sum_probs=88.6
Q ss_pred CCceEEeCCCCChHHHHHHHHHHhc-CCCeeeechhhhHHHHhhcchHHHHHHHHHH-----H-----------hcCCeE
Q 007575 365 PRGVLLVGLPGTGKTLLAKAVAGEA-EVPFISCSASEFVELYVGMGASRVRDLFARA-----K-----------KEAPSI 427 (597)
Q Consensus 365 p~gVLL~GPPGTGKT~LArAIA~el-~~pfi~is~sef~~~~vG~~e~~vr~lF~~A-----~-----------~~aP~I 427 (597)
.++|||+||||||||.+++.+...+ +.+++.++++.-. +...+...++.. + .+..+|
T Consensus 1304 ~~pvLL~GptGtGKT~li~~~L~~l~~~~~~~infS~~T------ta~~l~~~~e~~~e~~~~~~~G~~~~p~~~Gk~~V 1377 (3245)
T 3vkg_A 1304 HRPLILCGPPGSGKTMTLTSTLRAFPDFEVVSLNFSSAT------TPELLLKTFDHHCEYKRTPSGETVLRPTQLGKWLV 1377 (3245)
T ss_dssp TCCCEEESSTTSSHHHHHHHHGGGCTTEEEEEECCCTTC------CHHHHHHHHHHHEEEEECTTSCEEEEESSTTCEEE
T ss_pred CCcEEEECCCCCCHHHHHHHHHHhCCCCceEEEEeeCCC------CHHHHHHHHhhcceEEeccCCCcccCCCcCCceEE
Confidence 3579999999999998776655444 6667777776432 223343444321 0 122369
Q ss_pred EEEcCcchhhhhcCCcccccchhHHHHHHHHHHHHhcCCC--------CCCcEEEEEecCCC-----CCCChhhhCCCCc
Q 007575 428 IFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFD--------SNSAVIVLGATNRS-----DVLDPALRRPGRF 494 (597)
Q Consensus 428 LfIDEIDaL~~~r~~~~~~~~~~e~eqtLnqLL~emdg~~--------~~~~VIVIaaTNrp-----d~LD~aLlRpgRF 494 (597)
+||||++.-....- +....-..|.+++..- ++- .-.++.+|||.|.| ..|+++++| ||
T Consensus 1378 lFiDDiNmp~~D~y------GtQ~~ielLrqlld~~-g~yd~~~~~~~~i~d~~~vaamnPp~~gGr~~l~~Rf~r--~F 1448 (3245)
T 3vkg_A 1378 VFCDEINLPSTDKY------GTQRVITFIRQMVEKG-GFWRTSDHTWIKLDKIQFVGACNPPTDAGRVQLTHRFLR--HA 1448 (3245)
T ss_dssp EEETTTTCCCCCTT------SCCHHHHHHHHHHHHS-EEEETTTTEEEEESSEEEEEEECCTTSTTCCCCCHHHHT--TC
T ss_pred EEecccCCCCcccc------ccccHHHHHHHHHHcC-CeEECCCCeEEEecCeEEEEEcCCCCCCCCccCCHHHHh--hc
Confidence 99999975322211 1222334455555431 111 12468899999988 469999999 99
Q ss_pred ceEEEecCCCHHHHHHHHHHHHh
Q 007575 495 DRVVMVETPDKIGREAILKVHVS 517 (597)
Q Consensus 495 d~~I~v~~Pd~~eR~eILk~~l~ 517 (597)
. .+.++.|+.+....|+..++.
T Consensus 1449 ~-vi~i~~ps~esL~~If~til~ 1470 (3245)
T 3vkg_A 1449 P-ILLVDFPSTSSLTQIYGTFNR 1470 (3245)
T ss_dssp C-EEECCCCCHHHHHHHHHHHHH
T ss_pred e-EEEeCCCCHHHHHHHHHHHHH
Confidence 7 699999999999999876654
No 107
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=98.20 E-value=7e-07 Score=87.71 Aligned_cols=32 Identities=16% Similarity=0.198 Sum_probs=26.3
Q ss_pred CCCCceEEeCCCCChHHHHHHHHHHhcCCCee
Q 007575 363 RPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFI 394 (597)
Q Consensus 363 ~~p~gVLL~GPPGTGKT~LArAIA~el~~pfi 394 (597)
+..+++||+||||||||++|.++|+.+.-.++
T Consensus 56 Pkkn~ili~GPPGtGKTt~a~ala~~l~g~i~ 87 (212)
T 1tue_A 56 PKKNCLVFCGPANTGKSYFGMSFIHFIQGAVI 87 (212)
T ss_dssp TTCSEEEEESCGGGCHHHHHHHHHHHHTCEEC
T ss_pred CcccEEEEECCCCCCHHHHHHHHHHHhCCCee
Confidence 33467999999999999999999998754443
No 108
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=97.93 E-value=2.8e-05 Score=73.98 Aligned_cols=27 Identities=30% Similarity=0.487 Sum_probs=23.5
Q ss_pred ceEEeCCCCChHHHHHHHHHHhcCCCe
Q 007575 367 GVLLVGLPGTGKTLLAKAVAGEAEVPF 393 (597)
Q Consensus 367 gVLL~GPPGTGKT~LArAIA~el~~pf 393 (597)
.+.|.||+|+|||+|++.+++.+++.+
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l~i~~ 28 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERLGKRA 28 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHGGGE
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcC
Confidence 478999999999999999999876444
No 109
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=97.92 E-value=1.3e-05 Score=76.68 Aligned_cols=39 Identities=21% Similarity=0.094 Sum_probs=30.7
Q ss_pred CCCCCCceEEeCCCCChHHHHHHHHHHhcCCCeeeechh
Q 007575 361 GARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSAS 399 (597)
Q Consensus 361 g~~~p~gVLL~GPPGTGKT~LArAIA~el~~pfi~is~s 399 (597)
|.++..-++|+||||+|||+|++.++...+.+++.++..
T Consensus 16 gi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~v~~i~~~ 54 (220)
T 2cvh_A 16 GFAPGVLTQVYGPYASGKTTLALQTGLLSGKKVAYVDTE 54 (220)
T ss_dssp SBCTTSEEEEECSTTSSHHHHHHHHHHHHCSEEEEEESS
T ss_pred CCcCCEEEEEECCCCCCHHHHHHHHHHHcCCcEEEEECC
Confidence 455566789999999999999999998556666666544
No 110
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=97.90 E-value=5.3e-05 Score=77.03 Aligned_cols=27 Identities=33% Similarity=0.404 Sum_probs=23.9
Q ss_pred CCceEEeCCCCChHHHHHHHHHHhcCC
Q 007575 365 PRGVLLVGLPGTGKTLLAKAVAGEAEV 391 (597)
Q Consensus 365 p~gVLL~GPPGTGKT~LArAIA~el~~ 391 (597)
..+++|+||||||||++|+++|..++.
T Consensus 104 ~n~~~l~GppgtGKt~~a~ala~~~~l 130 (267)
T 1u0j_A 104 RNTIWLFGPATTGKTNIAEAIAHTVPF 130 (267)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHSSC
T ss_pred CcEEEEECCCCCCHHHHHHHHHhhhcc
Confidence 457999999999999999999997543
No 111
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=97.89 E-value=5.4e-05 Score=72.60 Aligned_cols=36 Identities=28% Similarity=0.353 Sum_probs=26.8
Q ss_pred CCCCCceEEeCCCCChHHHHHHHHHHhc---CCCeeeec
Q 007575 362 ARPPRGVLLVGLPGTGKTLLAKAVAGEA---EVPFISCS 397 (597)
Q Consensus 362 ~~~p~gVLL~GPPGTGKT~LArAIA~el---~~pfi~is 397 (597)
......++|+||||+|||+|++.++..+ +.+++.++
T Consensus 20 i~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~v~~~~ 58 (235)
T 2w0m_A 20 IPQGFFIALTGEPGTGKTIFSLHFIAKGLRDGDPCIYVT 58 (235)
T ss_dssp EETTCEEEEECSTTSSHHHHHHHHHHHHHHHTCCEEEEE
T ss_pred CcCCCEEEEEcCCCCCHHHHHHHHHHHHHHCCCeEEEEE
Confidence 4455678999999999999999998653 34444443
No 112
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=97.81 E-value=7.9e-05 Score=96.68 Aligned_cols=126 Identities=17% Similarity=0.186 Sum_probs=86.6
Q ss_pred CceEEeCCCCChHHHHHHHHHHhcCCCeeeechhhhHHHHhhcchHHHHHHHHHHHhcCCeEEEEcCcchhhhhcCCccc
Q 007575 366 RGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFVELYVGMGASRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFR 445 (597)
Q Consensus 366 ~gVLL~GPPGTGKT~LArAIA~el~~pfi~is~sef~~~~vG~~e~~vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~ 445 (597)
.|..+.||+|||||.+++.+|..+|.+++.++|++-. ....+..+|.-+... .+-.++||++.+-..
T Consensus 605 ~gg~~~GPaGtGKTet~k~La~~lgr~~~vfnC~~~~------d~~~~g~i~~G~~~~-GaW~cfDEfNrl~~~------ 671 (3245)
T 3vkg_A 605 MGGNPFGPAGTGKTETVKALGSQLGRFVLVFCCDEGF------DLQAMSRIFVGLCQC-GAWGCFDEFNRLEER------ 671 (3245)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHTTCCEEEEECSSCC------CHHHHHHHHHHHHHH-TCEEEEETTTSSCHH------
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHhCCeEEEEeCCCCC------CHHHHHHHHhhHhhc-CcEEEehhhhcCCHH------
Confidence 3578999999999999999999999999999998643 233445556555443 348899999887422
Q ss_pred ccchhHHHHHHHHHHH----Hh---------c-C--CCCCCcEEEEEecCC----CCCCChhhhCCCCcceEEEecCCCH
Q 007575 446 IVSNDEREQTLNQLLT----EM---------D-G--FDSNSAVIVLGATNR----SDVLDPALRRPGRFDRVVMVETPDK 505 (597)
Q Consensus 446 ~~~~~e~eqtLnqLL~----em---------d-g--~~~~~~VIVIaaTNr----pd~LD~aLlRpgRFd~~I~v~~Pd~ 505 (597)
.-.++.+.+. .+ + | +.-+..+-|++|.|. ...|+++|.. || +.|.+..||.
T Consensus 672 ------vLSvv~~qi~~I~~a~~~~~~~~~~~~G~~i~l~~~~~vfiTmNpgY~gr~eLP~nLk~--lF-r~v~m~~Pd~ 742 (3245)
T 3vkg_A 672 ------ILSAVSQQIQTIQVALKENSKEVELLGGKNISLHQDMGIFVTMNPGYAGRSNLPDNLKK--LF-RSMAMIKPDR 742 (3245)
T ss_dssp ------HHHHHHHHHHHHHHHHHHTCSEECCC---CEECCTTCEEEECBCCCGGGCCCSCHHHHT--TE-EEEECCSCCH
T ss_pred ------HHHHHHHHHHHHHHHHHcCCCeEEecCCCEEeecCCeEEEEEeCCCccCcccChHHHHh--hc-EEEEEeCCCH
Confidence 1112222111 11 1 1 112345677778884 3689999999 88 5799999998
Q ss_pred HHHHHHHH
Q 007575 506 IGREAILK 513 (597)
Q Consensus 506 ~eR~eILk 513 (597)
+...+|+-
T Consensus 743 ~~i~ei~L 750 (3245)
T 3vkg_A 743 EMIAQVML 750 (3245)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 88777753
No 113
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=97.81 E-value=4.4e-05 Score=74.18 Aligned_cols=78 Identities=15% Similarity=0.163 Sum_probs=48.9
Q ss_pred CCCCCCceEEeCCCCChHHHHHHHHHHh--c-------CCCeeeechhh------hHHH--Hhhcc--------------
Q 007575 361 GARPPRGVLLVGLPGTGKTLLAKAVAGE--A-------EVPFISCSASE------FVEL--YVGMG-------------- 409 (597)
Q Consensus 361 g~~~p~gVLL~GPPGTGKT~LArAIA~e--l-------~~pfi~is~se------f~~~--~vG~~-------------- 409 (597)
|.+...-++|+||||+|||+|++.++.. . +...++++..+ +... ..|..
T Consensus 20 gi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 99 (243)
T 1n0w_A 20 GIETGSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEGTFRPERLLAVAERYGLSGSDVLDNVAYARAF 99 (243)
T ss_dssp SEETTSEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHHHHHHHHTTCCHHHHHHTEEEEECC
T ss_pred CCcCCeEEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEECCCCcCHHHHHHHHHHcCCCHHHHhhCeEEEecC
Confidence 4455667899999999999999999985 2 34556665443 1111 01110
Q ss_pred -hH----HHHHHHHHHHhcCCeEEEEcCcchhhh
Q 007575 410 -AS----RVRDLFARAKKEAPSIIFIDEIDAVAK 438 (597)
Q Consensus 410 -e~----~vr~lF~~A~~~aP~ILfIDEIDaL~~ 438 (597)
.. .+..+.+.+....|.+|+|||+..+..
T Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~lliiD~~~~~~~ 133 (243)
T 1n0w_A 100 NTDHQTQLLYQASAMMVESRYALLIVDSATALYR 133 (243)
T ss_dssp SHHHHHHHHHHHHHHHHHSCEEEEEEETSSGGGC
T ss_pred CHHHHHHHHHHHHHHHhcCCceEEEEeCchHHHH
Confidence 11 122233444456799999999998764
No 114
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=97.79 E-value=4.7e-05 Score=70.72 Aligned_cols=40 Identities=18% Similarity=0.377 Sum_probs=34.5
Q ss_pred CCceEEeCCCCChHHHHHHHHHHhcCCCeeeechhhhHHH
Q 007575 365 PRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFVEL 404 (597)
Q Consensus 365 p~gVLL~GPPGTGKT~LArAIA~el~~pfi~is~sef~~~ 404 (597)
+..|+|+|+||+|||+++++++.+++.+|+.++.+++...
T Consensus 3 ~~~i~l~G~~GsGKST~a~~La~~l~~~~~~~~~D~~~~~ 42 (178)
T 1qhx_A 3 TRMIILNGGSSAGKSGIVRCLQSVLPEPWLAFGVDSLIEA 42 (178)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHSSSCEEEEEHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhcCCCeEEeccchHhhh
Confidence 4568999999999999999999999999998777766543
No 115
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=97.77 E-value=0.0001 Score=71.74 Aligned_cols=130 Identities=22% Similarity=0.206 Sum_probs=69.0
Q ss_pred CCCCCCceEEeCCCCChHHHHHHHHH--Hh--cCCCeeeechhhhHHH------Hhh-----------------------
Q 007575 361 GARPPRGVLLVGLPGTGKTLLAKAVA--GE--AEVPFISCSASEFVEL------YVG----------------------- 407 (597)
Q Consensus 361 g~~~p~gVLL~GPPGTGKT~LArAIA--~e--l~~pfi~is~sef~~~------~vG----------------------- 407 (597)
|.....-+.|.||+|+|||+|++.++ .. .+...+.+...+.... .+|
T Consensus 26 gi~~G~~~~l~GpnGsGKSTLl~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 105 (251)
T 2ehv_A 26 GFPEGTTVLLTGGTGTGKTTFAAQFIYKGAEEYGEPGVFVTLEERARDLRREMASFGWDFEKYEKEGKIAIVDGVSSVVG 105 (251)
T ss_dssp SEETTCEEEEECCTTSSHHHHHHHHHHHHHHHHCCCEEEEESSSCHHHHHHHHHTTTCCHHHHHHTTSEEEEC-------
T ss_pred CCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEEccCCHHHHHHHHHHcCCChHHHhhcCCEEEEEccccccc
Confidence 34455668999999999999999998 32 2333333322211000 000
Q ss_pred -------------cchHHHHHHHHHHHhcCCeEEEEcCcchhhhhcCCcccccchhHHHHHHHHHHHHhcCCCCCCcEEE
Q 007575 408 -------------MGASRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIV 474 (597)
Q Consensus 408 -------------~~e~~vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~eqtLnqLL~emdg~~~~~~VIV 474 (597)
........+........|.+|+|||.-++..... ......+.+..++..+.. .++.|
T Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~p~~lilDep~~~ld~~~------d~~~~~~~l~~l~~~l~~----~g~ti 175 (251)
T 2ehv_A 106 LPSEEKFVLEDRFNVDNFLRYIYRVVKAINAKRLVIDSIPSIALRLE------EERKIREVLLKLNTILLE----MGVTT 175 (251)
T ss_dssp ------------CCHHHHHHHHHHHHHHTTCSEEEEECHHHHHHHSS------SGGGHHHHHHHHHHHHHH----HCCEE
T ss_pred cccccceeccCcccHHHHHHHHHHHHHhhCCCEEEEccHHHHHhhcC------CHHHHHHHHHHHHHHHHH----CCCeE
Confidence 0111223333444557899999999987764321 112334445666666632 23556
Q ss_pred EEecCCCCCCC-----hhhhCCCCc-ceEEEecC
Q 007575 475 LGATNRSDVLD-----PALRRPGRF-DRVVMVET 502 (597)
Q Consensus 475 IaaTNrpd~LD-----~aLlRpgRF-d~~I~v~~ 502 (597)
|.+|+..+... ..+.. -+ |+++.+..
T Consensus 176 i~vtH~~~~~~~~~~~~~i~~--~~aD~vi~l~~ 207 (251)
T 2ehv_A 176 ILTTEAPDPQHGKLSRYGIEE--FIARGVIVLDL 207 (251)
T ss_dssp EEEECCC----CCSSSSSCGG--GGCSEEEEEEE
T ss_pred EEEECCCCCCcccccccChhh--EeeeEEEEEee
Confidence 66776654441 12222 35 77777753
No 116
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=97.73 E-value=3.5e-05 Score=79.86 Aligned_cols=79 Identities=19% Similarity=0.238 Sum_probs=50.4
Q ss_pred CCCCCCceEEeCCCCChHHHHHHHHHHhc---------CCCeeeechhhh--HH----H--Hhhcc--------------
Q 007575 361 GARPPRGVLLVGLPGTGKTLLAKAVAGEA---------EVPFISCSASEF--VE----L--YVGMG-------------- 409 (597)
Q Consensus 361 g~~~p~gVLL~GPPGTGKT~LArAIA~el---------~~pfi~is~sef--~~----~--~vG~~-------------- 409 (597)
|.+...-++|+||||+|||+||..+|..+ +.++++++...- .+ . ..|..
T Consensus 103 Gl~~G~i~~i~G~~GsGKT~la~~la~~~~~~~~~gg~~~~vlyi~~e~~~~~~~l~~~~~~~g~~~~~~~~~l~~~~~~ 182 (324)
T 2z43_A 103 GIETRTMTEFFGEFGSGKTQLCHQLSVNVQLPPEKGGLSGKAVYIDTEGTFRWERIENMAKALGLDIDNVMNNIYYIRAI 182 (324)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCCCHHHHHHHHHHTTCCHHHHHHTEEEEECC
T ss_pred CCCCCcEEEEECCCCCCHhHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCHHHHHHHHHHhCCCHHHHhccEEEEeCC
Confidence 44556679999999999999999998764 445666654431 11 1 01110
Q ss_pred --h---HHHHHHHHHHHh-cCCeEEEEcCcchhhhh
Q 007575 410 --A---SRVRDLFARAKK-EAPSIIFIDEIDAVAKS 439 (597)
Q Consensus 410 --e---~~vr~lF~~A~~-~aP~ILfIDEIDaL~~~ 439 (597)
+ ..+..+...++. ..+.+|+||.+..+...
T Consensus 183 ~~~~~~~~l~~l~~~~~~~~~~~lvVIDsl~~l~~~ 218 (324)
T 2z43_A 183 NTDHQIAIVDDLQELVSKDPSIKLIVVDSVTSHFRA 218 (324)
T ss_dssp SHHHHHHHHHHHHHHHHHCTTEEEEEETTTTHHHHH
T ss_pred CHHHHHHHHHHHHHHHHhccCCCEEEEeCcHHHhhh
Confidence 1 112233334444 67899999999999754
No 117
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=97.73 E-value=4.2e-05 Score=81.16 Aligned_cols=78 Identities=19% Similarity=0.256 Sum_probs=49.6
Q ss_pred CCCCCCceEEeCCCCChHHHHHHHHHHhc---CCCeeeechhhhHHH----Hhhc-----------chHHHHHHHHHH-H
Q 007575 361 GARPPRGVLLVGLPGTGKTLLAKAVAGEA---EVPFISCSASEFVEL----YVGM-----------GASRVRDLFARA-K 421 (597)
Q Consensus 361 g~~~p~gVLL~GPPGTGKT~LArAIA~el---~~pfi~is~sef~~~----~vG~-----------~e~~vr~lF~~A-~ 421 (597)
|.++..-++|+||||+|||+||..++.++ +.+++.++...-... ..|. ....+.+.++.. +
T Consensus 70 Gl~~G~li~I~G~pGsGKTtlal~la~~~~~~g~~vlyi~~E~s~~~~~a~~~g~d~~~l~i~~~~~~e~~l~~l~~l~~ 149 (366)
T 1xp8_A 70 GIPRGRITEIYGPESGGKTTLALAIVAQAQKAGGTCAFIDAEHALDPVYARALGVNTDELLVSQPDNGEQALEIMELLVR 149 (366)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHHT
T ss_pred CccCCcEEEEEcCCCCChHHHHHHHHHHHHHCCCeEEEEECCCChhHHHHHHcCCCHHHceeecCCcHHHHHHHHHHHHh
Confidence 45556679999999999999999998754 556666654422111 1121 112222333322 3
Q ss_pred hcCCeEEEEcCcchhhh
Q 007575 422 KEAPSIIFIDEIDAVAK 438 (597)
Q Consensus 422 ~~aP~ILfIDEIDaL~~ 438 (597)
...+++|+||.+..+..
T Consensus 150 ~~~~~lVVIDsl~~l~~ 166 (366)
T 1xp8_A 150 SGAIDVVVVDSVAALTP 166 (366)
T ss_dssp TTCCSEEEEECTTTCCC
T ss_pred cCCCCEEEEeChHHhcc
Confidence 46688999999999974
No 118
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=97.67 E-value=2.9e-05 Score=97.11 Aligned_cols=120 Identities=17% Similarity=0.137 Sum_probs=76.7
Q ss_pred CCCCCCceEEeCCCCChHHHHHHHHHHhc---CCCeeeechhhhHHHH----hhc--------chHHHHHHHHHHHh---
Q 007575 361 GARPPRGVLLVGLPGTGKTLLAKAVAGEA---EVPFISCSASEFVELY----VGM--------GASRVRDLFARAKK--- 422 (597)
Q Consensus 361 g~~~p~gVLL~GPPGTGKT~LArAIA~el---~~pfi~is~sef~~~~----vG~--------~e~~vr~lF~~A~~--- 422 (597)
|..+...++|+|+||+|||+||..+|.++ +.+++++++.+-.... .|. .+..+.+++..++.
T Consensus 728 Gl~~G~lilIaG~PG~GKTtLalqlA~~~a~~g~~VlyiS~Ees~~ql~A~rlG~~~~~l~i~~~~~i~~i~~~~r~l~~ 807 (2050)
T 3cmu_A 728 GLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALAR 807 (2050)
T ss_dssp SEETTSEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEECTTSCCCHHHHHHTTCCTTTCEEECCSSHHHHHHHHHHHHH
T ss_pred CcCCCcEEEEEcCCCCCHHHHHHHHHHHHHhcCCcEEEEECCCcHHHHHHHHcCCCccceEEecCCCHHHHHHHHHHHhh
Confidence 46777889999999999999999998865 4578888876544332 231 22235555555544
Q ss_pred -cCCeEEEEcCcchhhh-hcCCcccccch-hHHHHHHHHHHHHhcCCCCCCcEEEEEecCC
Q 007575 423 -EAPSIIFIDEIDAVAK-SRDGRFRIVSN-DEREQTLNQLLTEMDGFDSNSAVIVLGATNR 480 (597)
Q Consensus 423 -~aP~ILfIDEIDaL~~-~r~~~~~~~~~-~e~eqtLnqLL~emdg~~~~~~VIVIaaTNr 480 (597)
..|++|+||.|+.+.. ....+..+..+ +...+.+++++..|..+....++.||++..-
T Consensus 808 ~~~~~LVIIDsLq~i~~~~~~~~~~Gs~~q~La~Reis~ilr~Lk~lAke~~v~VI~l~Qv 868 (2050)
T 3cmu_A 808 SGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQI 868 (2050)
T ss_dssp HTCCSEEEESCGGGCCCHHHHHSCTTCCCTTHHHHHHHHHHHHHHHHHHTTTCEEEEEECC
T ss_pred ccCCCEEEEcchhhhcccccccCCCCchhhHHHHHHHHHHHHHHHHHHHHhCCEEEEeccc
Confidence 6799999999999975 22000000011 2223346777777766555566777766643
No 119
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=97.64 E-value=3.6e-05 Score=81.43 Aligned_cols=78 Identities=21% Similarity=0.219 Sum_probs=49.0
Q ss_pred CCCCCCceEEeCCCCChHHHHHHHHHHhc---CCCeeeechhhhHH----HHhhcc--------hHHHHHHHHH----HH
Q 007575 361 GARPPRGVLLVGLPGTGKTLLAKAVAGEA---EVPFISCSASEFVE----LYVGMG--------ASRVRDLFAR----AK 421 (597)
Q Consensus 361 g~~~p~gVLL~GPPGTGKT~LArAIA~el---~~pfi~is~sef~~----~~vG~~--------e~~vr~lF~~----A~ 421 (597)
|.++..-++|+||||+|||+|+..++..+ +.++++++..+... ...|.. ...+.+++.. .+
T Consensus 57 Gi~~G~i~~I~GppGsGKSTLal~la~~~~~~gg~VlyId~E~s~~~~ra~rlgv~~~~l~i~~~~~~e~~l~~~~~l~~ 136 (356)
T 3hr8_A 57 GYPRGRIVEIFGQESSGKTTLALHAIAEAQKMGGVAAFIDAEHALDPVYAKNLGVDLKSLLISQPDHGEQALEIVDELVR 136 (356)
T ss_dssp SEETTEEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHHHHHHHTCCGGGCEEECCSSHHHHHHHHHHHHH
T ss_pred CccCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEecccccchHHHHHcCCchhhhhhhhccCHHHHHHHHHHHhh
Confidence 34455568999999999999999998764 55666666543211 111110 0112222222 23
Q ss_pred hcCCeEEEEcCcchhhh
Q 007575 422 KEAPSIIFIDEIDAVAK 438 (597)
Q Consensus 422 ~~aP~ILfIDEIDaL~~ 438 (597)
...|++++||.+..+..
T Consensus 137 ~~~~dlvVIDSi~~l~~ 153 (356)
T 3hr8_A 137 SGVVDLIVVDSVAALVP 153 (356)
T ss_dssp TSCCSEEEEECTTTCCC
T ss_pred hcCCCeEEehHhhhhcC
Confidence 46789999999999875
No 120
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=97.62 E-value=0.00012 Score=70.44 Aligned_cols=29 Identities=31% Similarity=0.295 Sum_probs=24.0
Q ss_pred CCCCCCceEEeCCCCChHHHHHHHHHHhc
Q 007575 361 GARPPRGVLLVGLPGTGKTLLAKAVAGEA 389 (597)
Q Consensus 361 g~~~p~gVLL~GPPGTGKT~LArAIA~el 389 (597)
|.....-+.|.||+|+|||+|++.+++..
T Consensus 21 gi~~G~~~~l~G~nGsGKSTll~~l~g~~ 49 (231)
T 4a74_A 21 GIETQAITEVFGEFGSGKTQLAHTLAVMV 49 (231)
T ss_dssp SEESSEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred CCCCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 44455568999999999999999999854
No 121
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=97.62 E-value=0.00027 Score=76.84 Aligned_cols=157 Identities=19% Similarity=0.276 Sum_probs=97.3
Q ss_pred HHHHHHHHHHHhcCCeEEEEcCcchhhhhcCCcccccchhHHHHHHHHHHHHhcCCC--------CCCcEEEEEec----
Q 007575 411 SRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFD--------SNSAVIVLGAT---- 478 (597)
Q Consensus 411 ~~vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~eqtLnqLL~emdg~~--------~~~~VIVIaaT---- 478 (597)
...++.++.|..+ .|||+||||.++...++ .+.+-..+.+...||..|++.. ...+|++|++.
T Consensus 239 ~~~~~ai~~ae~~--~il~~DEidki~~~~~~---~~~D~s~egvq~aLL~~le~~~~~~~~~~~d~~~ilfI~~gaf~~ 313 (444)
T 1g41_A 239 ELKQKAIDAVEQN--GIVFIDEIDKICKKGEY---SGADVSREGVQRDLLPLVEGSTVSTKHGMVKTDHILFIASGAFQV 313 (444)
T ss_dssp HHHHHHHHHHHHH--CEEEEETGGGGSCCSSC---SSSHHHHHHHHHHHHHHHHCCEEEETTEEEECTTCEEEEEECCSS
T ss_pred HHHHHHHHHhccC--CeeeHHHHHHHhhccCC---CCCCchHHHHHHHHHHHhcccccccccceecCCcEEEEecccccc
Confidence 3455666666333 29999999999865432 2334445667788999999742 24678889887
Q ss_pred CCCCCCChhhhCCCCcceEEEecCCCHHHHHHHHHH-----------HHhcCCC--CCCCCCCHHHHHHh-------CCC
Q 007575 479 NRSDVLDPALRRPGRFDRVVMVETPDKIGREAILKV-----------HVSKKEL--PLAKDIDLGDIASM-------TTG 538 (597)
Q Consensus 479 Nrpd~LD~aLlRpgRFd~~I~v~~Pd~~eR~eILk~-----------~l~~~~~--~l~~dvdl~~LA~~-------t~G 538 (597)
+.|..+.|.|+. ||..+|.++.++.++..+|+.. .+...+. .+.++ .+..|++. |..
T Consensus 314 ~~~~dlipel~~--R~~i~i~l~~lt~~e~~~Il~~~~~~l~~q~~~~~~~~~~~l~~~~~-al~~i~~~a~~~~~~t~~ 390 (444)
T 1g41_A 314 ARPSDLIPELQG--RLPIRVELTALSAADFERILTEPHASLTEQYKALMATEGVNIAFTTD-AVKKIAEAAFRVNEKTEN 390 (444)
T ss_dssp CCGGGSCHHHHT--TCCEEEECCCCCHHHHHHHHHSSTTCHHHHHHHHHHTTTCEEEECHH-HHHHHHHHHHHHHHHSCC
T ss_pred CChhhcchHHhc--ccceeeeCCCCCHHHHHHHHHHHHHhHHHHHHHHhcccCceEEECHH-HHHHHHHHHHHhccCCcc
Confidence 234446688987 9999999999999999999831 1111122 22222 35666653 444
Q ss_pred CCHHHHHHHHHH----HHHHHHhc--CCCcccHHHHHHHHHHH
Q 007575 539 FTGADLANLVNE----AALLAGRL--NKVVVEKIDFIHAVERS 575 (597)
Q Consensus 539 ~SgaDL~~Lv~e----Aal~A~r~--~~~~It~~d~~~Al~~v 575 (597)
.-.+.|++++.. ++..+... ....|+.+++++.+...
T Consensus 391 ~GaR~L~~~ie~~~~~~~~~~~~~~~~~~~i~~~~v~~~l~~~ 433 (444)
T 1g41_A 391 IGARRLHTVMERLMDKISFSASDMNGQTVNIDAAYVADALGEV 433 (444)
T ss_dssp CGGGHHHHHHHHHHHHHHHHGGGCTTCEEEECHHHHHHHHTTT
T ss_pred CCchHHHHHHHHHHHHHHhhccccCCCeEEEeHHHHHHhcCcc
Confidence 444555555544 44443322 22358888887665543
No 122
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=97.60 E-value=4.3e-05 Score=80.46 Aligned_cols=78 Identities=21% Similarity=0.200 Sum_probs=48.3
Q ss_pred CCCCCCceEEeCCCCChHHHHHHHHHHhc---CCCeeeechhhhH----HHHhhcchH--------HHHHHHH----HHH
Q 007575 361 GARPPRGVLLVGLPGTGKTLLAKAVAGEA---EVPFISCSASEFV----ELYVGMGAS--------RVRDLFA----RAK 421 (597)
Q Consensus 361 g~~~p~gVLL~GPPGTGKT~LArAIA~el---~~pfi~is~sef~----~~~vG~~e~--------~vr~lF~----~A~ 421 (597)
|.++..-++|+||||+|||+||..++..+ +.+++.++...-. ....|.... .+.++++ .++
T Consensus 57 Gl~~G~iv~I~G~pGsGKTtLal~la~~~~~~g~~vlyi~~E~~~~~~~a~~lG~~~~~l~i~~~~~~e~~l~~~~~l~~ 136 (349)
T 2zr9_A 57 GLPRGRVIEIYGPESSGKTTVALHAVANAQAAGGIAAFIDAEHALDPEYAKKLGVDTDSLLVSQPDTGEQALEIADMLVR 136 (349)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHHT
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCCCcCHHHHHHcCCCHHHeEEecCCCHHHHHHHHHHHHh
Confidence 44555669999999999999999998654 4555555543211 111221110 1222222 333
Q ss_pred hcCCeEEEEcCcchhhh
Q 007575 422 KEAPSIIFIDEIDAVAK 438 (597)
Q Consensus 422 ~~aP~ILfIDEIDaL~~ 438 (597)
...|++|+||++..+..
T Consensus 137 ~~~~~lIVIDsl~~l~~ 153 (349)
T 2zr9_A 137 SGALDIIVIDSVAALVP 153 (349)
T ss_dssp TTCCSEEEEECGGGCCC
T ss_pred cCCCCEEEEcChHhhcc
Confidence 56799999999999873
No 123
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=97.60 E-value=0.00027 Score=78.21 Aligned_cols=171 Identities=18% Similarity=0.196 Sum_probs=93.3
Q ss_pred ccccccCChHHHHHHHHHHHHhcChhHHhhcCCCCCCceEEeCCCCChHHHHHHHHHHhc---------CCCeeeechh-
Q 007575 330 TFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEA---------EVPFISCSAS- 399 (597)
Q Consensus 330 tf~dV~G~de~k~~L~eiv~~l~~p~~~~~lg~~~p~gVLL~GPPGTGKT~LArAIA~el---------~~pfi~is~s- 399 (597)
....++|.++..++|.+.+... ...++-|+|+||+|+|||+||+.++... ++-++.+...
T Consensus 122 ~~~~~vGR~~~l~~L~~~L~~~----------~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~v~wv~~~~~~ 191 (591)
T 1z6t_A 122 RPVVFVTRKKLVNAIQQKLSKL----------KGEPGWVTIHGMAGCGKSVLAAEAVRDHSLLEGCFPGGVHWVSVGKQD 191 (591)
T ss_dssp CCSSCCCCHHHHHHHHHHHTTS----------TTSCEEEEEECCTTSSHHHHHHHHHCCHHHHHHHCTTCEEEEEEESCC
T ss_pred CCCeecccHHHHHHHHHHHhcc----------cCCCceEEEEcCCCCCHHHHHHHHHhchhHHHhhCCCceEEEECCCCc
Confidence 3456899999877777765421 1124568999999999999999997532 2223333321
Q ss_pred --hhHHHH------hh----------cchHHHHHHHHHHHh--cCCeEEEEcCcchhhhhcCCcccccchhHHHHHHHHH
Q 007575 400 --EFVELY------VG----------MGASRVRDLFARAKK--EAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQL 459 (597)
Q Consensus 400 --ef~~~~------vG----------~~e~~vr~lF~~A~~--~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~eqtLnqL 459 (597)
.+...+ .+ .....+...+..... ..|++|+||+++... .
T Consensus 192 ~~~~~~~l~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~LLVLDdv~~~~---------------------~ 250 (591)
T 1z6t_A 192 KSGLLMKLQNLCTRLDQDESFSQRLPLNIEEAKDRLRILMLRKHPRSLLILDDVWDSW---------------------V 250 (591)
T ss_dssp HHHHHHHHHHHHHHHCSSCCSCSSCCCSHHHHHHHHHHHHHHTCTTCEEEEEEECCHH---------------------H
T ss_pred hHHHHHHHHHHHHHhccccccccCCCCCHHHHHHHHHHHHccCCCCeEEEEeCCCCHH---------------------H
Confidence 111111 11 011122222332222 268999999997521 1
Q ss_pred HHHhcCCCCCCcEEEEEecCCCCCCChhhhCCCCcceEEEe---cCCCHHHHHHHHHHHHhcCCCCCCCCCCHHHHHHhC
Q 007575 460 LTEMDGFDSNSAVIVLGATNRSDVLDPALRRPGRFDRVVMV---ETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMT 536 (597)
Q Consensus 460 L~emdg~~~~~~VIVIaaTNrpd~LD~aLlRpgRFd~~I~v---~~Pd~~eR~eILk~~l~~~~~~l~~dvdl~~LA~~t 536 (597)
+. .+. .+..||.||..+..... . . ...+.+ +..+.++-.+++..++... .. ...-....|++.+
T Consensus 251 l~---~l~--~~~~ilvTsR~~~~~~~-~-~----~~~~~v~~l~~L~~~ea~~L~~~~~~~~-~~-~~~~~~~~i~~~~ 317 (591)
T 1z6t_A 251 LK---AFD--SQCQILLTTRDKSVTDS-V-M----GPKYVVPVESSLGKEKGLEILSLFVNMK-KA-DLPEQAHSIIKEC 317 (591)
T ss_dssp HH---TTC--SSCEEEEEESCGGGGTT-C-C----SCEEEEECCSSCCHHHHHHHHHHHHTSC-GG-GSCTHHHHHHHHH
T ss_pred HH---Hhc--CCCeEEEECCCcHHHHh-c-C----CCceEeecCCCCCHHHHHHHHHHHhCCC-cc-cccHHHHHHHHHh
Confidence 22 222 23455556654321110 0 1 223444 3678899999998887531 11 1122468899999
Q ss_pred CCCCHHHHH
Q 007575 537 TGFTGADLA 545 (597)
Q Consensus 537 ~G~SgaDL~ 545 (597)
.|. |--|.
T Consensus 318 ~G~-PLal~ 325 (591)
T 1z6t_A 318 KGS-PLVVS 325 (591)
T ss_dssp TTC-HHHHH
T ss_pred CCC-cHHHH
Confidence 885 43343
No 124
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=97.59 E-value=7.7e-05 Score=78.04 Aligned_cols=79 Identities=18% Similarity=0.134 Sum_probs=49.1
Q ss_pred CCCCCCceEEeCCCCChHHHHHHHHHHhc---------CCCeeeechhhh------HHH--Hhhc---------------
Q 007575 361 GARPPRGVLLVGLPGTGKTLLAKAVAGEA---------EVPFISCSASEF------VEL--YVGM--------------- 408 (597)
Q Consensus 361 g~~~p~gVLL~GPPGTGKT~LArAIA~el---------~~pfi~is~sef------~~~--~vG~--------------- 408 (597)
|.+...-++|+||||+|||+||..+|..+ +.++++++...- ... ..|.
T Consensus 118 Gl~~G~i~~I~G~~GsGKTtla~~la~~~~~~~~~gg~~~~vlyi~~E~~~~~~~l~~~~~~~g~~~~~~l~~l~~~~~~ 197 (343)
T 1v5w_A 118 GIESMAITEAFGEFRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFIDTENTFRPDRLRDIADRFNVDHDAVLDNVLYARAY 197 (343)
T ss_dssp SBCSSEEEEEECCTTCTHHHHHHHHHHHTTSCBTTTBCCCEEEEEESSSCCCHHHHHHHHHHTTCCHHHHHHTEEEEECC
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCHHHHHHHHHHcCCCHHHHHhceeEeecC
Confidence 44555568999999999999999998863 345555554331 111 0111
Q ss_pred -ch---HHHHHHHHHHHh--cCCeEEEEcCcchhhhh
Q 007575 409 -GA---SRVRDLFARAKK--EAPSIIFIDEIDAVAKS 439 (597)
Q Consensus 409 -~e---~~vr~lF~~A~~--~aP~ILfIDEIDaL~~~ 439 (597)
.+ ..+..+...+.. ..+.+|+||.+..+...
T Consensus 198 ~~e~~~~ll~~l~~~i~~~~~~~~lvVIDsl~~l~~~ 234 (343)
T 1v5w_A 198 TSEHQMELLDYVAAKFHEEAGIFKLLIIDSIMALFRV 234 (343)
T ss_dssp STTHHHHHHHHHHHHHHHSCSSEEEEEEETSGGGHHH
T ss_pred CHHHHHHHHHHHHHHHHhcCCCccEEEEechHHHHHH
Confidence 11 111222334444 67889999999999754
No 125
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=97.51 E-value=0.00022 Score=77.28 Aligned_cols=53 Identities=25% Similarity=0.438 Sum_probs=36.2
Q ss_pred CCCCcccccccCChHHHHHHHHHHHHhcChhHHhhcCCCCCCceEEeCCCCChHHHHHHHHHHhc
Q 007575 325 QGDTITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEA 389 (597)
Q Consensus 325 ~~~~vtf~dV~G~de~k~~L~eiv~~l~~p~~~~~lg~~~p~gVLL~GPPGTGKT~LArAIA~el 389 (597)
...+.+|+++ .++.++.+..++.++... ...++|.|+||||||+++.+++..+
T Consensus 17 ~~~p~~~~~L--n~~Q~~av~~~~~~i~~~----------~~~~li~G~aGTGKT~ll~~~~~~l 69 (459)
T 3upu_A 17 RGSHMTFDDL--TEGQKNAFNIVMKAIKEK----------KHHVTINGPAGTGATTLTKFIIEAL 69 (459)
T ss_dssp ----CCSSCC--CHHHHHHHHHHHHHHHSS----------SCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred ccCCCccccC--CHHHHHHHHHHHHHHhcC----------CCEEEEEeCCCCCHHHHHHHHHHHH
Confidence 3446777766 445666666666665442 1269999999999999999998765
No 126
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=97.51 E-value=0.0013 Score=78.20 Aligned_cols=169 Identities=18% Similarity=0.201 Sum_probs=96.7
Q ss_pred ccccccCChHHHHHHHHHHHHhcChhHHhhcCCCCCCceEEeCCCCChHHHHHHHHHHhc---C--CC----eeeechh-
Q 007575 330 TFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEA---E--VP----FISCSAS- 399 (597)
Q Consensus 330 tf~dV~G~de~k~~L~eiv~~l~~p~~~~~lg~~~p~gVLL~GPPGTGKT~LArAIA~el---~--~p----fi~is~s- 399 (597)
....++|.++..++|.+.+.... ..++-|.|+|+.|+|||+||+.++... . .+ ++.++..
T Consensus 122 ~~~~~vgR~~~~~~l~~~l~~~~----------~~~~~v~i~G~gG~GKTtLa~~~~~~~~~~~~~~~~~~~~v~~~~~~ 191 (1249)
T 3sfz_A 122 RPVIFVTRKKLVHAIQQKLWKLN----------GEPGWVTIYGMAGCGKSVLAAEAVRDHSLLEGCFSGGVHWVSIGKQD 191 (1249)
T ss_dssp CCSSCCCCHHHHHHHHHHHHTTT----------TSCEEEEEECSTTSSHHHHHHHHTCCHHHHTTTSTTCEEEEECCSCC
T ss_pred CCceeccHHHHHHHHHHHHhhcc----------CCCCEEEEEeCCCCCHHHHHHHHhcChhHHHhhCCCeEEEEEECCcC
Confidence 34568999998887777664211 224458899999999999999998752 1 11 3333321
Q ss_pred --hhHHH-------Hh---------hcchHHHHHHHHHHHhcC--CeEEEEcCcchhhhhcCCcccccchhHHHHHHHHH
Q 007575 400 --EFVEL-------YV---------GMGASRVRDLFARAKKEA--PSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQL 459 (597)
Q Consensus 400 --ef~~~-------~v---------G~~e~~vr~lF~~A~~~a--P~ILfIDEIDaL~~~r~~~~~~~~~~e~eqtLnqL 459 (597)
..... .. ......+.+.+....... +.+|+||+++...
T Consensus 192 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~LlvlDd~~~~~---------------------- 249 (1249)
T 3sfz_A 192 KSGLLMKLQNLCMRLDQEESFSQRLPLNIEEAKDRLRVLMLRKHPRSLLILDDVWDPW---------------------- 249 (1249)
T ss_dssp HHHHHHHHHHHHHHHTTTCTTCSSCCSSHHHHHHHHHHHTSSSSCSCEEEEESCCCHH----------------------
T ss_pred chHHHHHHHHHHHHhhhhcccccCCCCCHHHHHHHHHHHHhccCCCEEEEEecCCCHH----------------------
Confidence 11111 00 011223333344333333 7899999997531
Q ss_pred HHHhcCCCCCCcEEEEEecCCCCCCChhhhCCCCcceEEEecC-CCHHHHHHHHHHHHhcCCCCCCCCCCHHHHHHhCCC
Q 007575 460 LTEMDGFDSNSAVIVLGATNRSDVLDPALRRPGRFDRVVMVET-PDKIGREAILKVHVSKKELPLAKDIDLGDIASMTTG 538 (597)
Q Consensus 460 L~emdg~~~~~~VIVIaaTNrpd~LD~aLlRpgRFd~~I~v~~-Pd~~eR~eILk~~l~~~~~~l~~dvdl~~LA~~t~G 538 (597)
.++.+. .+..||.||..+....... .....+.++. .+.++-.++|..+..... + .......+|++.+.|
T Consensus 250 --~~~~~~--~~~~ilvTtR~~~~~~~~~----~~~~~~~~~~~l~~~~a~~l~~~~~~~~~-~-~~~~~~~~i~~~~~g 319 (1249)
T 3sfz_A 250 --VLKAFD--NQCQILLTTRDKSVTDSVM----GPKHVVPVESGLGREKGLEILSLFVNMKK-E-DLPAEAHSIIKECKG 319 (1249)
T ss_dssp --HHTTTC--SSCEEEEEESSTTTTTTCC----SCBCCEECCSSCCHHHHHHHHHHHHTSCS-T-TCCTHHHHHHHHTTT
T ss_pred --HHHhhc--CCCEEEEEcCCHHHHHhhc----CCceEEEecCCCCHHHHHHHHHHhhCCCh-h-hCcHHHHHHHHHhCC
Confidence 122222 2335666776554332111 2234677775 888899999988774321 1 112237789999988
Q ss_pred CC
Q 007575 539 FT 540 (597)
Q Consensus 539 ~S 540 (597)
..
T Consensus 320 lP 321 (1249)
T 3sfz_A 320 SP 321 (1249)
T ss_dssp CH
T ss_pred CH
Confidence 63
No 127
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=97.50 E-value=0.00011 Score=77.67 Aligned_cols=78 Identities=21% Similarity=0.239 Sum_probs=50.5
Q ss_pred CCCCCCceEEeCCCCChHHHHHHHHHHhc---CCCeeeechhh----hHHHHhhc-----------chHHHHHHHHHH-H
Q 007575 361 GARPPRGVLLVGLPGTGKTLLAKAVAGEA---EVPFISCSASE----FVELYVGM-----------GASRVRDLFARA-K 421 (597)
Q Consensus 361 g~~~p~gVLL~GPPGTGKT~LArAIA~el---~~pfi~is~se----f~~~~vG~-----------~e~~vr~lF~~A-~ 421 (597)
|.++..-++|+||||+|||+||..+|.++ +.+++.++... ......|. ....+.++++.. +
T Consensus 59 Gl~~G~ii~I~G~pGsGKTtLal~la~~~~~~g~~vlyid~E~s~~~~~a~~~g~~~~~l~i~~~~~~e~~~~~~~~l~~ 138 (356)
T 1u94_A 59 GLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALAR 138 (356)
T ss_dssp SEETTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHHH
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCCccHHHHHHcCCChhheeeeCCCCHHHHHHHHHHHHh
Confidence 45556679999999999999999998754 56677666532 11111121 112233333322 3
Q ss_pred hcCCeEEEEcCcchhhh
Q 007575 422 KEAPSIIFIDEIDAVAK 438 (597)
Q Consensus 422 ~~aP~ILfIDEIDaL~~ 438 (597)
...+.+|+||.+..+..
T Consensus 139 ~~~~~lVVIDsl~~l~~ 155 (356)
T 1u94_A 139 SGAVDVIVVDSVAALTP 155 (356)
T ss_dssp HTCCSEEEEECGGGCCC
T ss_pred ccCCCEEEEcCHHHhcc
Confidence 56788999999999874
No 128
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=97.46 E-value=0.00035 Score=67.74 Aligned_cols=38 Identities=34% Similarity=0.416 Sum_probs=27.8
Q ss_pred CCCCCCceEEeCCCCChHHHHHHHHHHhc---CCCeeeech
Q 007575 361 GARPPRGVLLVGLPGTGKTLLAKAVAGEA---EVPFISCSA 398 (597)
Q Consensus 361 g~~~p~gVLL~GPPGTGKT~LArAIA~el---~~pfi~is~ 398 (597)
|..+..-++|+||||+|||+|+..++... +.+++.++.
T Consensus 19 Gl~~G~~~~i~G~~GsGKTtl~~~~~~~~~~~~~~v~~~~~ 59 (247)
T 2dr3_A 19 GIPERNVVLLSGGPGTGKTIFSQQFLWNGLKMGEPGIYVAL 59 (247)
T ss_dssp SEETTCEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEES
T ss_pred CCCCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEc
Confidence 45556678999999999999998887542 445555543
No 129
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=97.44 E-value=0.00034 Score=71.36 Aligned_cols=60 Identities=28% Similarity=0.400 Sum_probs=41.3
Q ss_pred hHHHHHHHHHHHHhcChhHHhhcCCCCCCceEEeCCCCChHHHHHHHHHHhcCCCeeeechhhh
Q 007575 338 DEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEF 401 (597)
Q Consensus 338 de~k~~L~eiv~~l~~p~~~~~lg~~~p~gVLL~GPPGTGKT~LArAIA~el~~pfi~is~sef 401 (597)
++..+.+.+++..+... ......|..++|.||||+|||++|++++.+++..++.++++.+
T Consensus 10 ~~~~~~~~~~~~~~l~~----~~~~~~~~livl~G~sGsGKSTla~~L~~~~~~~~~~Is~D~~ 69 (287)
T 1gvn_B 10 KQFENRLNDNLEELIQG----KKAVESPTAFLLGGQPGSGKTSLRSAIFEETQGNVIVIDNDTF 69 (287)
T ss_dssp HHHHHHHHHHHHHHHTT----CCCCSSCEEEEEECCTTSCTHHHHHHHHHHTTTCCEEECTHHH
T ss_pred HHHHHHHHHHHHHHhcc----ccCCCCCeEEEEECCCCCCHHHHHHHHHHHhCCCeEEEechHh
Confidence 45555566666553221 1123446779999999999999999999988555667776554
No 130
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=97.41 E-value=0.00029 Score=70.13 Aligned_cols=60 Identities=23% Similarity=0.321 Sum_probs=41.8
Q ss_pred hHHHHHHHHHHHHhcChhHHhhcCCCCCCceEEeCCCCChHHHHHHHHHHhcCCCeeeechhhh
Q 007575 338 DEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEF 401 (597)
Q Consensus 338 de~k~~L~eiv~~l~~p~~~~~lg~~~p~gVLL~GPPGTGKT~LArAIA~el~~pfi~is~sef 401 (597)
++.+..+++++..+.... .....|..++|.|+||+|||++|+.++..++.+++.+++..+
T Consensus 9 ~~~~~~~~~~~~~~~~~~----~~~~~~~~i~l~G~~GsGKSTla~~L~~~l~~~~~~~~~D~~ 68 (253)
T 2p5t_B 9 SEFKHALARNLRSLTRGK----KSSKQPIAILLGGQSGAGKTTIHRIKQKEFQGNIVIIDGDSF 68 (253)
T ss_dssp HHHHHHHHHHHHHHHTTC----CCCSSCEEEEEESCGGGTTHHHHHHHHHHTTTCCEEECGGGG
T ss_pred HHHHHHHHHHHHHHHccC----CcccCCeEEEEECCCCCCHHHHHHHHHHhcCCCcEEEecHHH
Confidence 344444555544432221 123456779999999999999999999999877777777665
No 131
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=97.39 E-value=8.2e-05 Score=69.61 Aligned_cols=41 Identities=24% Similarity=0.347 Sum_probs=32.9
Q ss_pred CCceEEeCCCCChHHHHHHHHHHhcCCCeeeechhhhHHHHhh
Q 007575 365 PRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFVELYVG 407 (597)
Q Consensus 365 p~gVLL~GPPGTGKT~LArAIA~el~~pfi~is~sef~~~~vG 407 (597)
++.|+|+||||+|||++++.+|.+++.+|+.. +++.....|
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La~~l~~~~i~~--d~~~~~~~g 45 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLAKLTKRILYDS--DKEIEKRTG 45 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHHCCCEEEH--HHHHHHHHT
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhCCCEEEC--hHHHHHHcC
Confidence 56799999999999999999999999998854 444444333
No 132
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=97.38 E-value=0.00017 Score=74.28 Aligned_cols=28 Identities=21% Similarity=0.297 Sum_probs=23.4
Q ss_pred CCCCCCceEEeCCCCChHHHHHHHHHHh
Q 007575 361 GARPPRGVLLVGLPGTGKTLLAKAVAGE 388 (597)
Q Consensus 361 g~~~p~gVLL~GPPGTGKT~LArAIA~e 388 (597)
|.++..-++|+||||+|||+||..+|..
T Consensus 94 Gl~~g~i~~i~G~~gsGKT~la~~la~~ 121 (322)
T 2i1q_A 94 GLESQSVTEFAGVFGSGKTQIMHQSCVN 121 (322)
T ss_dssp SEETTEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 4455566899999999999999999865
No 133
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=97.36 E-value=9.1e-05 Score=91.69 Aligned_cols=78 Identities=21% Similarity=0.207 Sum_probs=54.5
Q ss_pred CCCCCCceEEeCCCCChHHHHHHHHHHhc---CCCeeeechhhhH----HHHhhc--------chHHHHHHHHHHH----
Q 007575 361 GARPPRGVLLVGLPGTGKTLLAKAVAGEA---EVPFISCSASEFV----ELYVGM--------GASRVRDLFARAK---- 421 (597)
Q Consensus 361 g~~~p~gVLL~GPPGTGKT~LArAIA~el---~~pfi~is~sef~----~~~vG~--------~e~~vr~lF~~A~---- 421 (597)
|..++..++|+||||+|||+||..+|.++ +.++++++..+-. ....|. .+..+.+++..++
T Consensus 728 Gl~~G~lVlI~G~PG~GKTtLal~lA~~aa~~g~~VlyiS~Ees~~ql~A~~lGvd~~~L~i~~~~~leei~~~l~~lv~ 807 (1706)
T 3cmw_A 728 GLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALAR 807 (1706)
T ss_dssp SEETTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEECTTSCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHHH
T ss_pred CcCCCceEEEECCCCCCcHHHHHHHHHHHHHcCCCeEEEeccchHHHHHHHHcCCChhheEEecCCcHHHHHHHHHHHHH
Confidence 46777889999999999999999998765 4567777655332 222231 1123345555544
Q ss_pred hcCCeEEEEcCcchhhh
Q 007575 422 KEAPSIIFIDEIDAVAK 438 (597)
Q Consensus 422 ~~aP~ILfIDEIDaL~~ 438 (597)
...|++|+||+++.+..
T Consensus 808 ~~~~~lVVIDsLq~l~~ 824 (1706)
T 3cmw_A 808 SGAVDVIVVDSVAALTP 824 (1706)
T ss_dssp HTCCSEEEESCSTTCCC
T ss_pred ccCCCEEEEechhhhcc
Confidence 47899999999999873
No 134
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=97.35 E-value=0.00017 Score=77.43 Aligned_cols=118 Identities=16% Similarity=0.138 Sum_probs=61.3
Q ss_pred CCCCCCceEEeCCCCChHHHHHHHHHHhc---------CCCeeeechhhh------H--HHHhhcc--------------
Q 007575 361 GARPPRGVLLVGLPGTGKTLLAKAVAGEA---------EVPFISCSASEF------V--ELYVGMG-------------- 409 (597)
Q Consensus 361 g~~~p~gVLL~GPPGTGKT~LArAIA~el---------~~pfi~is~sef------~--~~~vG~~-------------- 409 (597)
|..+..-++|+||||+|||+|++.++-.. +...++++..+. . ...+|..
T Consensus 174 GI~~Gei~~I~G~sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyid~E~~~~~~rl~~~a~~~gl~~~~vleni~~~~~~ 253 (400)
T 3lda_A 174 GVETGSITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTEGTFRPVRLVSIAQRFGLDPDDALNNVAYARAY 253 (400)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHHHHHHHHTTCCHHHHHHTEEEEECC
T ss_pred CcCCCcEEEEEcCCCCChHHHHHHHHHHhccCcccCCCCCcEEEEeCCCccCHHHHHHHHHHcCCChHhHhhcEEEeccC
Confidence 55566679999999999999999776332 223555554331 0 0011111
Q ss_pred -----hHHHHHHHHHHHhcCCeEEEEcCcchhhhhcCCcccccchhHHHHHHHHHHHHhcCCCCCCcEEEEEecCC
Q 007575 410 -----ASRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATNR 480 (597)
Q Consensus 410 -----e~~vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~eqtLnqLL~emdg~~~~~~VIVIaaTNr 480 (597)
...+..+...+....|.+|+||++-.+....-.+ .+...++.+.+.+++..|..+....++.||.++..
T Consensus 254 ~~~~~~~~l~~~~~~l~~~~~~llVIDs~t~~~~~~~sg--~g~l~~Rq~~l~~il~~L~~lake~gitVIlv~Hv 327 (400)
T 3lda_A 254 NADHQLRLLDAAAQMMSESRFSLIVVDSVMALYRTDFSG--RGELSARQMHLAKFMRALQRLADQFGVAVVVTNQV 327 (400)
T ss_dssp SHHHHHHHHHHHHHHHHHSCEEEEEEETGGGGCC--------CCHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEEC
T ss_pred ChHHHHHHHHHHHHHHHhcCCceEEecchhhhCchhhcC--ccchHHHHHHHHHHHHHHHHHHHHcCCEEEEEEee
Confidence 0112223333445679999999998876432110 11223344444444444443332334555555544
No 135
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=97.35 E-value=0.00013 Score=76.22 Aligned_cols=76 Identities=11% Similarity=0.199 Sum_probs=46.7
Q ss_pred CCCCCceEEeCCCCChHHHHHHHHHHhc-----CCCeeeechhhhHH----HHhhcch--------HHHHH----HHHH-
Q 007575 362 ARPPRGVLLVGLPGTGKTLLAKAVAGEA-----EVPFISCSASEFVE----LYVGMGA--------SRVRD----LFAR- 419 (597)
Q Consensus 362 ~~~p~gVLL~GPPGTGKT~LArAIA~el-----~~pfi~is~sef~~----~~vG~~e--------~~vr~----lF~~- 419 (597)
.++. -++|+||||+|||+|+-.++.++ +..+++++..+-.. ...|... ....+ +.+.
T Consensus 26 l~~G-iteI~G~pGsGKTtL~Lq~~~~~~~~g~g~~vlyId~E~s~~~~ra~~lGvd~d~llv~~~~~~E~~~l~i~~~l 104 (333)
T 3io5_A 26 MQSG-LLILAGPSKSFKSNFGLTMVSSYMRQYPDAVCLFYDSEFGITPAYLRSMGVDPERVIHTPVQSLEQLRIDMVNQL 104 (333)
T ss_dssp BCSE-EEEEEESSSSSHHHHHHHHHHHHHHHCTTCEEEEEESSCCCCHHHHHHTTCCGGGEEEEECSBHHHHHHHHHHHH
T ss_pred CcCC-eEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEeccchhhHHHHHHhCCCHHHeEEEcCCCHHHHHHHHHHHH
Confidence 3334 57899999999999988776543 55666666543211 1112111 11222 2222
Q ss_pred --HHhcCCeEEEEcCcchhhh
Q 007575 420 --AKKEAPSIIFIDEIDAVAK 438 (597)
Q Consensus 420 --A~~~aP~ILfIDEIDaL~~ 438 (597)
.+...|.+|+||-|.++.+
T Consensus 105 ~~i~~~~~~lvVIDSI~aL~~ 125 (333)
T 3io5_A 105 DAIERGEKVVVFIDSLGNLAS 125 (333)
T ss_dssp HTCCTTCCEEEEEECSTTCBC
T ss_pred HHhhccCceEEEEeccccccc
Confidence 2456799999999999974
No 136
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=97.33 E-value=0.0011 Score=73.23 Aligned_cols=165 Identities=10% Similarity=0.105 Sum_probs=91.3
Q ss_pred cCChHHHHHHHHHHHHhcChhHHhhcCCCCCCceEEeCCCCChHHHHHHHHHH----hcCC-----Ceeeechh------
Q 007575 335 AGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAG----EAEV-----PFISCSAS------ 399 (597)
Q Consensus 335 ~G~de~k~~L~eiv~~l~~p~~~~~lg~~~p~gVLL~GPPGTGKT~LArAIA~----el~~-----pfi~is~s------ 399 (597)
+|.++.+++|.+.+..- +....+.|.|+|+.|+|||+||+.+++ +..- -++.++..
T Consensus 131 ~GR~~~~~~l~~~L~~~---------~~~~~~vv~I~G~gGvGKTtLA~~v~~~~~~~~~~~F~~~~wv~vs~~~~~~~~ 201 (549)
T 2a5y_B 131 YIREYHVDRVIKKLDEM---------CDLDSFFLFLHGRAGSGKSVIASQALSKSDQLIGINYDSIVWLKDSGTAPKSTF 201 (549)
T ss_dssp CCCHHHHHHHHHHHHHH---------TTSSSEEEEEECSTTSSHHHHHHHHHHHCSSTBTTTBSEEEEEECCCCSTTHHH
T ss_pred CCchHHHHHHHHHHhcc---------cCCCceEEEEEcCCCCCHHHHHHHHHHhhhHHHhccCCcEEEEEECCCCCCCHH
Confidence 49998888777776421 112245688999999999999999996 3322 22333331
Q ss_pred hhHHHH---hhcc-------------hHHHHHHHHHHHhcC-CeEEEEcCcchhhhhcCCcccccchhHHHHHHHHHHHH
Q 007575 400 EFVELY---VGMG-------------ASRVRDLFARAKKEA-PSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTE 462 (597)
Q Consensus 400 ef~~~~---vG~~-------------e~~vr~lF~~A~~~a-P~ILfIDEIDaL~~~r~~~~~~~~~~e~eqtLnqLL~e 462 (597)
.+.... .+.. ...+...+....... +++|+||+++... +. .+ ..
T Consensus 202 ~~~~~il~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~L~~~kr~LlVLDdv~~~~----------------~~--~~-~~ 262 (549)
T 2a5y_B 202 DLFTDILLMLKSEDDLLNFPSVEHVTSVVLKRMICNALIDRPNTLFVFDDVVQEE----------------TI--RW-AQ 262 (549)
T ss_dssp HHHHHHHHHHTTTSCCTTCCCCTTCCHHHHHHHHHHHHTTSTTEEEEEEEECCHH----------------HH--HH-HH
T ss_pred HHHHHHHHHHhcCcccccccccccccHHHHHHHHHHHHcCCCcEEEEEECCCCch----------------hh--cc-cc
Confidence 111111 1110 112344455554554 8899999997631 11 11 11
Q ss_pred hcCCCCCCcEEEEEecCCCCCCChhhhCCCCcceEEEecCCCHHHHHHHHHHHHhcCCCCCCCCC--CHHHHHHhCCCC
Q 007575 463 MDGFDSNSAVIVLGATNRSDVLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKDI--DLGDIASMTTGF 539 (597)
Q Consensus 463 mdg~~~~~~VIVIaaTNrpd~LD~aLlRpgRFd~~I~v~~Pd~~eR~eILk~~l~~~~~~l~~dv--dl~~LA~~t~G~ 539 (597)
. .+..||.||....... ..+..+..+.++..+.++-.++|..+.... +..++. ....|++.+.|.
T Consensus 263 ~------~gs~ilvTTR~~~v~~----~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~--~~~~~~~~~~~~I~~~c~Gl 329 (549)
T 2a5y_B 263 E------LRLRCLVTTRDVEISN----AASQTCEFIEVTSLEIDECYDFLEAYGMPM--PVGEKEEDVLNKTIELSSGN 329 (549)
T ss_dssp H------TTCEEEEEESBGGGGG----GCCSCEEEEECCCCCHHHHHHHHHHTSCCC--C--CHHHHHHHHHHHHHTTC
T ss_pred c------CCCEEEEEcCCHHHHH----HcCCCCeEEECCCCCHHHHHHHHHHHhcCC--CCchhHHHHHHHHHHHhCCC
Confidence 1 2335555666432111 111234578999999999999998875321 110111 145667777764
No 137
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=97.30 E-value=0.00011 Score=68.84 Aligned_cols=35 Identities=34% Similarity=0.587 Sum_probs=30.2
Q ss_pred CCCCCceEEeCCCCChHHHHHHHHHHhcCCCeeee
Q 007575 362 ARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISC 396 (597)
Q Consensus 362 ~~~p~gVLL~GPPGTGKT~LArAIA~el~~pfi~i 396 (597)
...|.-|+|.|+||+|||++++.++..++.+++..
T Consensus 2 ~~~~~~I~l~G~~GsGKST~~~~L~~~l~~~~i~~ 36 (193)
T 2rhm_A 2 MQTPALIIVTGHPATGKTTLSQALATGLRLPLLSK 36 (193)
T ss_dssp CSCCEEEEEEESTTSSHHHHHHHHHHHHTCCEEEH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHcCCeEecH
Confidence 34566799999999999999999999999887764
No 138
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=97.30 E-value=0.00069 Score=65.68 Aligned_cols=38 Identities=32% Similarity=0.284 Sum_probs=28.0
Q ss_pred CCCCCCceEEeCCCCChHHHHHHHHHHh----cCCCeeeech
Q 007575 361 GARPPRGVLLVGLPGTGKTLLAKAVAGE----AEVPFISCSA 398 (597)
Q Consensus 361 g~~~p~gVLL~GPPGTGKT~LArAIA~e----l~~pfi~is~ 398 (597)
|.++..-++|+|+||+|||++|..+|.+ .+.+++.++.
T Consensus 26 Gl~~G~l~~i~G~pG~GKT~l~l~~~~~~~~~~~~~v~~~s~ 67 (251)
T 2zts_A 26 GFPEGTTVLLTGGTGTGKTTFAAQFIYKGAEEYGEPGVFVTL 67 (251)
T ss_dssp SEETTCEEEEECCTTSSHHHHHHHHHHHHHHHHCCCEEEEES
T ss_pred CCCCCeEEEEEeCCCCCHHHHHHHHHHHHHHhcCCCceeecc
Confidence 4555667999999999999999887643 3566665543
No 139
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=97.30 E-value=0.00012 Score=69.85 Aligned_cols=40 Identities=38% Similarity=0.546 Sum_probs=32.1
Q ss_pred CCCCceEEeCCCCChHHHHHHHHHHhcCCCeeeechhhhHHH
Q 007575 363 RPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFVEL 404 (597)
Q Consensus 363 ~~p~gVLL~GPPGTGKT~LArAIA~el~~pfi~is~sef~~~ 404 (597)
.++..|+|.||||+|||++++++|+.++.+++.. .++...
T Consensus 23 ~~~~~i~l~G~~GsGKsTl~~~La~~l~~~~i~~--d~~~~~ 62 (199)
T 3vaa_A 23 NAMVRIFLTGYMGAGKTTLGKAFARKLNVPFIDL--DWYIEE 62 (199)
T ss_dssp -CCCEEEEECCTTSCHHHHHHHHHHHHTCCEEEH--HHHHHH
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHHHHcCCCEEcc--hHHHHH
Confidence 3456799999999999999999999999998754 444433
No 140
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=97.30 E-value=0.00029 Score=74.00 Aligned_cols=29 Identities=31% Similarity=0.295 Sum_probs=24.9
Q ss_pred CCCCCCceEEeCCCCChHHHHHHHHHHhc
Q 007575 361 GARPPRGVLLVGLPGTGKTLLAKAVAGEA 389 (597)
Q Consensus 361 g~~~p~gVLL~GPPGTGKT~LArAIA~el 389 (597)
|.+...-+.|+||||+|||+|++.++..+
T Consensus 127 gi~~G~i~~I~G~~GsGKTTL~~~l~~~~ 155 (349)
T 1pzn_A 127 GIETQAITEVFGEFGSGKTQLAHTLAVMV 155 (349)
T ss_dssp SEESSEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 45555678999999999999999999876
No 141
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=97.29 E-value=0.00051 Score=74.55 Aligned_cols=197 Identities=15% Similarity=0.175 Sum_probs=102.9
Q ss_pred CCCceEEeCCCCChHHHHHHHHHHhc---CCCeeeechhhh-------HHHH------------h-hcchHHHHHHHHHH
Q 007575 364 PPRGVLLVGLPGTGKTLLAKAVAGEA---EVPFISCSASEF-------VELY------------V-GMGASRVRDLFARA 420 (597)
Q Consensus 364 ~p~gVLL~GPPGTGKT~LArAIA~el---~~pfi~is~sef-------~~~~------------v-G~~e~~vr~lF~~A 420 (597)
.|.-++++|++|+|||+++..+|..+ |..+..++++.+ ...+ . ......+++.++.+
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~~l~~~G~kVllv~~D~~R~aa~eqL~~~~~~~gvpv~~~~~~~dp~~i~~~al~~a 178 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLARYFQKRGYKVGVVCSDTWRPGAYHQLRQLLDRYHIEVFGNPQEKDAIKLAKEGVDYF 178 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCCSSTHHHHHHHHHHGGGTCEEECCTTCCCHHHHHHHHHHHH
T ss_pred CCeEEEEECcCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCcchhHHHHHHHHHHhcCCcEEecCCCCCHHHHHHHHHHHH
Confidence 46789999999999999999998754 555555544322 0000 0 11233456778888
Q ss_pred HhcCCeEEEEcCcchhhhhcCCcccccchhHHHHHHHHHHHHhcCCCCCCcEEEEEecCCCCCCC--hhhhCCCCcceEE
Q 007575 421 KKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATNRSDVLD--PALRRPGRFDRVV 498 (597)
Q Consensus 421 ~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~eqtLnqLL~emdg~~~~~~VIVIaaTNrpd~LD--~aLlRpgRFd~~I 498 (597)
+...+.+|+||..-.+. .++.....+..+..... +..-++|+-++.-.+.++ ..+.....++ -+
T Consensus 179 ~~~~~DvVIIDTaGrl~----------~d~~lm~el~~i~~~~~---pd~vlLVvDA~~gq~a~~~a~~f~~~~~i~-gV 244 (443)
T 3dm5_A 179 KSKGVDIIIVDTAGRHK----------EDKALIEEMKQISNVIH---PHEVILVIDGTIGQQAYNQALAFKEATPIG-SI 244 (443)
T ss_dssp HHTTCSEEEEECCCCSS----------CCHHHHHHHHHHHHHHC---CSEEEEEEEGGGGGGHHHHHHHHHHSCTTE-EE
T ss_pred HhCCCCEEEEECCCccc----------chHHHHHHHHHHHHhhc---CceEEEEEeCCCchhHHHHHHHHHhhCCCe-EE
Confidence 87778899999874321 12222233334443332 223344444443222221 1122111222 24
Q ss_pred EecCCCHHHHHHHHHHHHhcCCCCCC-----------CCCCHHHHHHhCCCCCHHHHHHHHHHHHH----------HHHh
Q 007575 499 MVETPDKIGREAILKVHVSKKELPLA-----------KDIDLGDIASMTTGFTGADLANLVNEAAL----------LAGR 557 (597)
Q Consensus 499 ~v~~Pd~~eR~eILk~~l~~~~~~l~-----------~dvdl~~LA~~t~G~SgaDL~~Lv~eAal----------~A~r 557 (597)
.+...|...+...+.......+.|+. ...+.+.++.+.-|+ +|+..|++.|.. .+.+
T Consensus 245 IlTKlD~~~~gG~~ls~~~~~g~PI~fig~Ge~vddL~~f~~~~~~~~llg~--gd~~~l~e~~~~~~~~~~~~~~~~~k 322 (443)
T 3dm5_A 245 IVTKLDGSAKGGGALSAVAATGAPIKFIGTGEKIDDIEPFDPPRFVSRLLGL--GDIQGLLEKFKELEKEVEIKEEDIER 322 (443)
T ss_dssp EEECCSSCSSHHHHHHHHHTTCCCEEEEECSSSTTCEEECCHHHHHHHHTTT--TCHHHHHHHHHHHHTTHHHHHHHHHH
T ss_pred EEECCCCcccccHHHHHHHHHCCCEEEEEcCCChHHhhhCCHHHHHHHHcCC--CcHHHHHHHHHHhhhhhHHHHHHHHH
Confidence 45555544443322222222222221 223578888777654 588888865532 2222
Q ss_pred cCCCcccHHHHHHHHHHHh
Q 007575 558 LNKVVVEKIDFIHAVERSI 576 (597)
Q Consensus 558 ~~~~~It~~d~~~Al~~v~ 576 (597)
-.+...|.+||.+-++.+.
T Consensus 323 ~~~~~f~l~d~~~q~~~~~ 341 (443)
T 3dm5_A 323 FLRGKFTLKDMYAQLEAMR 341 (443)
T ss_dssp HHTTCCCHHHHHHHHHHHH
T ss_pred HhhCCcCHHHHHHHHHHHH
Confidence 1233588899988877653
No 142
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=97.27 E-value=0.00015 Score=71.79 Aligned_cols=70 Identities=14% Similarity=0.129 Sum_probs=42.9
Q ss_pred CceEEeCCCCChHHHHHHHHHHhc---CCCeeeechhh-------hHHHHhhc-----chHHHHHHHHHHHh----cCCe
Q 007575 366 RGVLLVGLPGTGKTLLAKAVAGEA---EVPFISCSASE-------FVELYVGM-----GASRVRDLFARAKK----EAPS 426 (597)
Q Consensus 366 ~gVLL~GPPGTGKT~LArAIA~el---~~pfi~is~se-------f~~~~vG~-----~e~~vr~lF~~A~~----~aP~ 426 (597)
.-++++||+|+|||+++..++.++ +..++.+.... +.+. .|. ......++++.+.. ..+.
T Consensus 13 ~i~litG~mGsGKTT~ll~~~~r~~~~g~kVli~~~~~d~r~~~~i~sr-lG~~~~~~~~~~~~~i~~~i~~~~~~~~~d 91 (223)
T 2b8t_A 13 WIEFITGPMFAGKTAELIRRLHRLEYADVKYLVFKPKIDTRSIRNIQSR-TGTSLPSVEVESAPEILNYIMSNSFNDETK 91 (223)
T ss_dssp EEEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEEECCCGGGCSSCCCC-CCCSSCCEEESSTHHHHHHHHSTTSCTTCC
T ss_pred EEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEEeccCchHHHHHHHh-cCCCccccccCCHHHHHHHHHHHhhCCCCC
Confidence 347788999999999998887665 55555553221 1110 111 01122456666654 3478
Q ss_pred EEEEcCcchh
Q 007575 427 IIFIDEIDAV 436 (597)
Q Consensus 427 ILfIDEIDaL 436 (597)
+|+|||++.+
T Consensus 92 vViIDEaQ~l 101 (223)
T 2b8t_A 92 VIGIDEVQFF 101 (223)
T ss_dssp EEEECSGGGS
T ss_pred EEEEecCccC
Confidence 9999999875
No 143
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=97.23 E-value=0.00011 Score=70.23 Aligned_cols=31 Identities=13% Similarity=-0.006 Sum_probs=22.2
Q ss_pred CceEEeCCCCChHHHHHHHHHHhc---CCCeeee
Q 007575 366 RGVLLVGLPGTGKTLLAKAVAGEA---EVPFISC 396 (597)
Q Consensus 366 ~gVLL~GPPGTGKT~LArAIA~el---~~pfi~i 396 (597)
.-++++||+|+|||+++..++.++ +..++.+
T Consensus 4 ~i~vi~G~~gsGKTT~ll~~~~~~~~~g~~v~~~ 37 (184)
T 2orw_A 4 KLTVITGPMYSGKTTELLSFVEIYKLGKKKVAVF 37 (184)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHHHHHTTCEEEEE
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEE
Confidence 347899999999999986666543 5544433
No 144
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=97.18 E-value=0.00055 Score=63.07 Aligned_cols=31 Identities=29% Similarity=0.585 Sum_probs=27.2
Q ss_pred CCceEEeCCCCChHHHHHHHHHHhcCCCeee
Q 007575 365 PRGVLLVGLPGTGKTLLAKAVAGEAEVPFIS 395 (597)
Q Consensus 365 p~gVLL~GPPGTGKT~LArAIA~el~~pfi~ 395 (597)
+..+.|+||||+|||++++.+|+.++.+++.
T Consensus 4 ~~~i~l~G~~GsGKSTl~~~La~~l~~~~id 34 (173)
T 1kag_A 4 KRNIFLVGPMGAGKSTIGRQLAQQLNMEFYD 34 (173)
T ss_dssp CCCEEEECCTTSCHHHHHHHHHHHTTCEEEE
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhCCCEEe
Confidence 3569999999999999999999999876653
No 145
>2iut_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- cell division, DNA translocation, KOPS, membrane; HET: DNA SAP; 2.25A {Pseudomonas aeruginosa} PDB: 2iuu_A*
Probab=97.17 E-value=0.0032 Score=70.27 Aligned_cols=74 Identities=15% Similarity=0.290 Sum_probs=55.5
Q ss_pred eEEEEcCcchhhhhcCCcccccchhHHHHHHHHHHHHhcCCCCCCcEEEEEecCCCC--CCChhhhCCCCcceEEEecCC
Q 007575 426 SIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATNRSD--VLDPALRRPGRFDRVVMVETP 503 (597)
Q Consensus 426 ~ILfIDEIDaL~~~r~~~~~~~~~~e~eqtLnqLL~emdg~~~~~~VIVIaaTNrpd--~LD~aLlRpgRFd~~I~v~~P 503 (597)
.+|+|||++.+....+ .+.+..+.++..+ ....+|.+|.+|.+|. .++..++. -|...|.+...
T Consensus 345 ivvVIDE~~~L~~~~~--------~~~~~~L~~Iar~----GRa~GIhLIlaTQRPs~d~I~~~Ira--n~~~RI~lrv~ 410 (574)
T 2iut_A 345 IVVVVDEFADMMMIVG--------KKVEELIARIAQK----ARAAGIHLILATQRPSVDVITGLIKA--NIPTRIAFQVS 410 (574)
T ss_dssp EEEEESCCTTHHHHTC--------HHHHHHHHHHHHH----CTTTTEEEEEEESCCCTTTSCHHHHH--TCCEEEEECCS
T ss_pred EEEEEeCHHHHhhhhh--------HHHHHHHHHHHHH----HhhCCeEEEEEecCcccccccHHHHh--hhccEEEEEcC
Confidence 5899999998875421 2334455555544 3357899999999997 88988877 78888999999
Q ss_pred CHHHHHHHHH
Q 007575 504 DKIGREAILK 513 (597)
Q Consensus 504 d~~eR~eILk 513 (597)
+..+...||.
T Consensus 411 s~~Dsr~ILd 420 (574)
T 2iut_A 411 SKIDSRTILD 420 (574)
T ss_dssp CHHHHHHHHS
T ss_pred CHHHHHHhcC
Confidence 9888887774
No 146
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=97.17 E-value=0.0002 Score=66.96 Aligned_cols=36 Identities=31% Similarity=0.553 Sum_probs=30.0
Q ss_pred CceEEeCCCCChHHHHHHHHHHhcCCCeeeechhhhHH
Q 007575 366 RGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFVE 403 (597)
Q Consensus 366 ~gVLL~GPPGTGKT~LArAIA~el~~pfi~is~sef~~ 403 (597)
..|+|+|+||+|||++|+.++..++.+++.. +++..
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~lg~~~id~--D~~~~ 38 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGRRLAKALGVGLLDT--DVAIE 38 (184)
T ss_dssp CSEEEECSTTSSHHHHHHHHHHHHTCCEEEH--HHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHcCCCEEeC--chHHH
Confidence 3599999999999999999999999998754 44443
No 147
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=97.15 E-value=0.00027 Score=66.25 Aligned_cols=39 Identities=31% Similarity=0.476 Sum_probs=32.9
Q ss_pred CCCCceEEeCCCCChHHHHHHHHHHhcCCCeeeechhhh
Q 007575 363 RPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEF 401 (597)
Q Consensus 363 ~~p~gVLL~GPPGTGKT~LArAIA~el~~pfi~is~sef 401 (597)
..+..+.|.||||+|||++++.+++..+.+.+.++..++
T Consensus 7 ~~g~~i~l~G~~GsGKSTl~~~La~~~~~g~i~i~~d~~ 45 (191)
T 1zp6_A 7 LGGNILLLSGHPGSGKSTIAEALANLPGVPKVHFHSDDL 45 (191)
T ss_dssp CTTEEEEEEECTTSCHHHHHHHHHTCSSSCEEEECTTHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHhccCCCeEEEcccch
Confidence 445568999999999999999999998878788877665
No 148
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=97.14 E-value=0.00023 Score=66.38 Aligned_cols=33 Identities=36% Similarity=0.622 Sum_probs=29.2
Q ss_pred CCCceEEeCCCCChHHHHHHHHHHhcCCCeeee
Q 007575 364 PPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISC 396 (597)
Q Consensus 364 ~p~gVLL~GPPGTGKT~LArAIA~el~~pfi~i 396 (597)
.++.|+|+|+||+|||+++++++..++.+++..
T Consensus 10 ~~~~i~i~G~~GsGKst~~~~l~~~~~~~~~~~ 42 (180)
T 3iij_A 10 LLPNILLTGTPGVGKTTLGKELASKSGLKYINV 42 (180)
T ss_dssp CCCCEEEECSTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred cCCeEEEEeCCCCCHHHHHHHHHHHhCCeEEEH
Confidence 356799999999999999999999999888754
No 149
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=97.11 E-value=0.00026 Score=64.78 Aligned_cols=31 Identities=26% Similarity=0.254 Sum_probs=27.9
Q ss_pred ceEEeCCCCChHHHHHHHHHHhcCCCeeeec
Q 007575 367 GVLLVGLPGTGKTLLAKAVAGEAEVPFISCS 397 (597)
Q Consensus 367 gVLL~GPPGTGKT~LArAIA~el~~pfi~is 397 (597)
-|+|.||||+|||++++.++..++.+++..+
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~~l~~~~i~~d 33 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSKELKYPIIKGS 33 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHHHHCCCEEECC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCeeecCc
Confidence 4889999999999999999999998887654
No 150
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=97.11 E-value=0.00063 Score=67.99 Aligned_cols=39 Identities=28% Similarity=0.418 Sum_probs=32.5
Q ss_pred CCceEEeCCCCChHHHHHHHHHHh---cCCCeeeechhhhHH
Q 007575 365 PRGVLLVGLPGTGKTLLAKAVAGE---AEVPFISCSASEFVE 403 (597)
Q Consensus 365 p~gVLL~GPPGTGKT~LArAIA~e---l~~pfi~is~sef~~ 403 (597)
+.-|+|+|+||+|||++|+.++.. .|.+++.++.+.+..
T Consensus 4 ~~lIvl~G~pGSGKSTla~~La~~L~~~g~~~i~~~~D~~~~ 45 (260)
T 3a4m_A 4 IMLIILTGLPGVGKSTFSKNLAKILSKNNIDVIVLGSDLIRE 45 (260)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEECTHHHHT
T ss_pred CEEEEEEcCCCCCHHHHHHHHHHHHHhCCCEEEEECchHHHH
Confidence 456899999999999999999997 788888677666543
No 151
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*
Probab=97.08 E-value=0.0032 Score=69.55 Aligned_cols=76 Identities=17% Similarity=0.327 Sum_probs=53.4
Q ss_pred Ce-EEEEcCcchhhhhcCCcccccchhHHHHHHHHHHHHhcCCCCCCcEEEEEecCCCC--CCChhhhCCCCcceEEEec
Q 007575 425 PS-IIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATNRSD--VLDPALRRPGRFDRVVMVE 501 (597)
Q Consensus 425 P~-ILfIDEIDaL~~~r~~~~~~~~~~e~eqtLnqLL~emdg~~~~~~VIVIaaTNrpd--~LD~aLlRpgRFd~~I~v~ 501 (597)
|. +|+|||...+.... ..+.+..+..|... ....++.+|.+|.+|+ .++..++. .|...|.+.
T Consensus 297 P~ivlvIDE~~~ll~~~--------~~~~~~~l~~Lar~----gRa~GI~LIlaTQrp~~dvl~~~i~~--n~~~RI~lr 362 (512)
T 2ius_A 297 PYIVVLVDEFADLMMTV--------GKKVEELIARLAQK----ARAAGIHLVLATQRPSVDVITGLIKA--NIPTRIAFT 362 (512)
T ss_dssp CEEEEEEETHHHHHHHH--------HHHHHHHHHHHHHH----CGGGTEEEEEEESCCCTTTSCHHHHH--HCCEEEEEC
T ss_pred CcEEEEEeCHHHHHhhh--------hHHHHHHHHHHHHH----hhhCCcEEEEEecCCccccccHHHHh--hcCCeEEEE
Confidence 54 88999998876421 12333444444333 2245789999999986 68888877 788889999
Q ss_pred CCCHHHHHHHHHH
Q 007575 502 TPDKIGREAILKV 514 (597)
Q Consensus 502 ~Pd~~eR~eILk~ 514 (597)
..+..+...|+..
T Consensus 363 v~s~~dsr~ilg~ 375 (512)
T 2ius_A 363 VSSKIDSRTILDQ 375 (512)
T ss_dssp CSSHHHHHHHHSS
T ss_pred cCCHHHHHHhcCC
Confidence 9999888888754
No 152
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=97.08 E-value=0.00024 Score=66.12 Aligned_cols=35 Identities=29% Similarity=0.669 Sum_probs=29.4
Q ss_pred ceEEeCCCCChHHHHHHHHHHhcCCCeeeechhhhHH
Q 007575 367 GVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFVE 403 (597)
Q Consensus 367 gVLL~GPPGTGKT~LArAIA~el~~pfi~is~sef~~ 403 (597)
.++|.||||+|||++|+++|..++.+|+. ..++..
T Consensus 6 ~i~i~G~~GsGKsTla~~La~~l~~~~~d--~d~~~~ 40 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAKDLDLVFLD--SDFLIE 40 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHHTCEEEE--HHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHcCCCEEc--ccHHHH
Confidence 58999999999999999999999988775 344433
No 153
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=97.08 E-value=0.00033 Score=66.65 Aligned_cols=34 Identities=38% Similarity=0.495 Sum_probs=29.6
Q ss_pred CCCCceEEeCCCCChHHHHHHHHHHhcCCCeeee
Q 007575 363 RPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISC 396 (597)
Q Consensus 363 ~~p~gVLL~GPPGTGKT~LArAIA~el~~pfi~i 396 (597)
..|..|+|.|+||+|||++|+.++.+++.+++.+
T Consensus 18 ~~~~~I~l~G~~GsGKST~a~~La~~l~~~~i~~ 51 (201)
T 2cdn_A 18 GSHMRVLLLGPPGAGKGTQAVKLAEKLGIPQIST 51 (201)
T ss_dssp CSCCEEEEECCTTSSHHHHHHHHHHHHTCCEEEH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhCCcEEeh
Confidence 4456799999999999999999999999887654
No 154
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=97.06 E-value=0.00027 Score=66.62 Aligned_cols=32 Identities=34% Similarity=0.579 Sum_probs=28.0
Q ss_pred CCceEEeCCCCChHHHHHHHHHHh-cCCCeeee
Q 007575 365 PRGVLLVGLPGTGKTLLAKAVAGE-AEVPFISC 396 (597)
Q Consensus 365 p~gVLL~GPPGTGKT~LArAIA~e-l~~pfi~i 396 (597)
+..|+|+|+||+|||++++.++.. +|.+++.+
T Consensus 10 ~~~I~l~G~~GsGKSTv~~~La~~l~g~~~id~ 42 (184)
T 1y63_A 10 GINILITGTPGTGKTSMAEMIAAELDGFQHLEV 42 (184)
T ss_dssp SCEEEEECSTTSSHHHHHHHHHHHSTTEEEEEH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhcCCCEEeeH
Confidence 456999999999999999999999 68777654
No 155
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=97.05 E-value=0.00043 Score=69.60 Aligned_cols=27 Identities=30% Similarity=0.294 Sum_probs=22.5
Q ss_pred CCCCCceEEeCCCCChHHHHHHHHHHh
Q 007575 362 ARPPRGVLLVGLPGTGKTLLAKAVAGE 388 (597)
Q Consensus 362 ~~~p~gVLL~GPPGTGKT~LArAIA~e 388 (597)
.....-++|+||||+|||+|++.++..
T Consensus 27 l~~G~i~~i~G~~GsGKTtl~~~l~~~ 53 (279)
T 1nlf_A 27 MVAGTVGALVSPGGAGKSMLALQLAAQ 53 (279)
T ss_dssp EETTSEEEEEESTTSSHHHHHHHHHHH
T ss_pred ccCCCEEEEEcCCCCCHHHHHHHHHHH
Confidence 344556899999999999999999864
No 156
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=96.99 E-value=0.00035 Score=64.43 Aligned_cols=31 Identities=23% Similarity=0.477 Sum_probs=28.5
Q ss_pred CceEEeCCCCChHHHHHHHHHHhcCCCeeee
Q 007575 366 RGVLLVGLPGTGKTLLAKAVAGEAEVPFISC 396 (597)
Q Consensus 366 ~gVLL~GPPGTGKT~LArAIA~el~~pfi~i 396 (597)
..|+|.|+||+|||++++.+|.+++.|++..
T Consensus 8 ~~i~l~G~~GsGKSTva~~La~~lg~~~id~ 38 (168)
T 1zuh_A 8 QHLVLIGFMGSGKSSLAQELGLALKLEVLDT 38 (168)
T ss_dssp CEEEEESCTTSSHHHHHHHHHHHHTCCEEEH
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhCCCEEEC
Confidence 4799999999999999999999999998754
No 157
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=96.98 E-value=0.00077 Score=73.00 Aligned_cols=37 Identities=22% Similarity=0.275 Sum_probs=29.1
Q ss_pred CCCCCCceEEeCCCCChHHHHHHHHHHhc----CCCeeeec
Q 007575 361 GARPPRGVLLVGLPGTGKTLLAKAVAGEA----EVPFISCS 397 (597)
Q Consensus 361 g~~~p~gVLL~GPPGTGKT~LArAIA~el----~~pfi~is 397 (597)
|..+..-++|.|+||+|||+|+..+|..+ |.+++.++
T Consensus 199 Gl~~G~liiI~G~pG~GKTtl~l~ia~~~~~~~g~~Vl~~s 239 (454)
T 2r6a_A 199 GFQRSDLIIVAARPSVGKTAFALNIAQNVATKTNENVAIFS 239 (454)
T ss_dssp SBCTTCEEEEECCTTSCHHHHHHHHHHHHHHHSSCCEEEEE
T ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHHHHHHhCCCcEEEEE
Confidence 55666679999999999999999998753 55666654
No 158
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=96.98 E-value=0.00031 Score=65.55 Aligned_cols=37 Identities=27% Similarity=0.438 Sum_probs=30.0
Q ss_pred CCceEEeCCCCChHHHHHHHHHHhcCCCeeeechhhhHH
Q 007575 365 PRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFVE 403 (597)
Q Consensus 365 p~gVLL~GPPGTGKT~LArAIA~el~~pfi~is~sef~~ 403 (597)
|.-|+|.|+||+|||++|+.++..++.+++. .+++..
T Consensus 3 ~~~I~l~G~~GsGKsT~a~~L~~~~~~~~i~--~d~~~~ 39 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQCARIVEKYGYTHLS--AGELLR 39 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHCCEEEE--HHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHhCCeEEe--HHHHHH
Confidence 4568999999999999999999999987654 444443
No 159
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=96.97 E-value=0.00055 Score=76.64 Aligned_cols=97 Identities=28% Similarity=0.416 Sum_probs=54.7
Q ss_pred CceEEeCCCCChHHHHHHHHHHhc---CCCeeeechhhh----HHHHhhcchHHHHHHHHHH---------HhcCCeEEE
Q 007575 366 RGVLLVGLPGTGKTLLAKAVAGEA---EVPFISCSASEF----VELYVGMGASRVRDLFARA---------KKEAPSIIF 429 (597)
Q Consensus 366 ~gVLL~GPPGTGKT~LArAIA~el---~~pfi~is~sef----~~~~vG~~e~~vr~lF~~A---------~~~aP~ILf 429 (597)
..++|.||||||||+++.+++..+ +.+++.+..+.- +....+.....+..++... .....++|+
T Consensus 205 ~~~~I~G~pGTGKTt~i~~l~~~l~~~g~~Vl~~ApT~~Aa~~L~e~~~~~a~Tih~ll~~~~~~~~~~~~~~~~~dvlI 284 (574)
T 3e1s_A 205 RLVVLTGGPGTGKSTTTKAVADLAESLGLEVGLCAPTGKAARRLGEVTGRTASTVHRLLGYGPQGFRHNHLEPAPYDLLI 284 (574)
T ss_dssp SEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEESSHHHHHHHHHHHTSCEEEHHHHTTEETTEESCSSSSCCSCSEEE
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEecCcHHHHHHhHhhhcccHHHHHHHHcCCcchhhhhhcccccCCEEE
Confidence 468999999999999999998753 566655533211 1111222233333333111 011346999
Q ss_pred EcCcchhhhhcCCcccccchhHHHHHHHHHHHHhcCCCCCCcEEEEEecCC
Q 007575 430 IDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATNR 480 (597)
Q Consensus 430 IDEIDaL~~~r~~~~~~~~~~e~eqtLnqLL~emdg~~~~~~VIVIaaTNr 480 (597)
|||+..+.. ..+..|+..+ .....+++++-.+.
T Consensus 285 IDEasml~~---------------~~~~~Ll~~~---~~~~~lilvGD~~Q 317 (574)
T 3e1s_A 285 VDEVSMMGD---------------ALMLSLLAAV---PPGARVLLVGDTDQ 317 (574)
T ss_dssp ECCGGGCCH---------------HHHHHHHTTS---CTTCEEEEEECTTS
T ss_pred EcCccCCCH---------------HHHHHHHHhC---cCCCEEEEEecccc
Confidence 999976631 2334454433 34556777766554
No 160
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=96.97 E-value=0.00035 Score=65.09 Aligned_cols=33 Identities=24% Similarity=0.398 Sum_probs=28.6
Q ss_pred CCCceEEeCCCCChHHHHHHHHHHhcCCCeeee
Q 007575 364 PPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISC 396 (597)
Q Consensus 364 ~p~gVLL~GPPGTGKT~LArAIA~el~~pfi~i 396 (597)
.+.-|+|.|+||+|||++++.++..++.+++..
T Consensus 5 ~~~~I~l~G~~GsGKsT~~~~L~~~l~~~~i~~ 37 (194)
T 1qf9_A 5 KPNVVFVLGGPGSGKGTQCANIVRDFGWVHLSA 37 (194)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred cCcEEEEECCCCCCHHHHHHHHHHHhCCeEeeH
Confidence 456799999999999999999999998776654
No 161
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=96.96 E-value=0.0011 Score=71.71 Aligned_cols=199 Identities=14% Similarity=0.141 Sum_probs=96.5
Q ss_pred CCCceEEeCCCCChHHHHHHHHHHhc---CCCeeeechhhh-------HH---HHhhc----------chHHHHHHHHHH
Q 007575 364 PPRGVLLVGLPGTGKTLLAKAVAGEA---EVPFISCSASEF-------VE---LYVGM----------GASRVRDLFARA 420 (597)
Q Consensus 364 ~p~gVLL~GPPGTGKT~LArAIA~el---~~pfi~is~sef-------~~---~~vG~----------~e~~vr~lF~~A 420 (597)
.|.-++++||+|+|||+++..+|..+ +..+..++++.+ .. ...|. ........+..+
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~~l~~~G~kVllv~~D~~r~~a~eqL~~~~~~~gv~~~~~~~~~dp~~i~~~al~~a 175 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAYFYKKRGYKVGLVAADVYRPAAYDQLLQLGNQIGVQVYGEPNNQNPIEIAKKGVDIF 175 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHHHHHHTTCCEEEEEECCSCHHHHHHHHHHHHTTTCCEECCTTCSCHHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEecCccchhHHHHHHHHHHhcCCceeeccccCCHHHHHHHHHHHH
Confidence 46778999999999999999998754 455544443311 01 11111 112234556666
Q ss_pred HhcCCeEEEEcCcchhhhhcCCcccccchhHHHHHHHHHHHHhcCCCCCCcEEEEEecCCCCCCC--hhhhCCCCcceEE
Q 007575 421 KKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATNRSDVLD--PALRRPGRFDRVV 498 (597)
Q Consensus 421 ~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~eqtLnqLL~emdg~~~~~~VIVIaaTNrpd~LD--~aLlRpgRFd~~I 498 (597)
....+.+|+||....+... .+...-..+..++..+. +..-++|+-++.-.+.++ .++.....+ .-+
T Consensus 176 ~~~~~DvvIIDTaGr~~~~--------~d~~lm~el~~i~~~~~---pd~vlLVlDa~~gq~a~~~a~~f~~~~~~-~gV 243 (433)
T 3kl4_A 176 VKNKMDIIIVDTAGRHGYG--------EETKLLEEMKEMYDVLK---PDDVILVIDASIGQKAYDLASRFHQASPI-GSV 243 (433)
T ss_dssp TTTTCSEEEEEECCCSSSC--------CTTHHHHHHHHHHHHHC---CSEEEEEEEGGGGGGGHHHHHHHHHHCSS-EEE
T ss_pred HhcCCCEEEEECCCCcccc--------CCHHHHHHHHHHHHhhC---CcceEEEEeCccchHHHHHHHHHhcccCC-cEE
Confidence 6667889999987433200 11222233334444442 223334444443222221 111110012 234
Q ss_pred EecCCCHHHHHHHHHHHHhcCCCC---------CC--CCCCHHHHHHhCCCCCHHHHHHHHHHHHHHHHhc---------
Q 007575 499 MVETPDKIGREAILKVHVSKKELP---------LA--KDIDLGDIASMTTGFTGADLANLVNEAALLAGRL--------- 558 (597)
Q Consensus 499 ~v~~Pd~~eR~eILk~~l~~~~~~---------l~--~dvdl~~LA~~t~G~SgaDL~~Lv~eAal~A~r~--------- 558 (597)
.+...|...+....-......+.| +. ...+.+.++.+.-|+ +|+..++..|...-...
T Consensus 244 IlTKlD~~a~~G~als~~~~~g~Pi~fig~Ge~v~dL~~f~p~~~~~~llg~--gd~~~l~e~~~~~~~~~~~~~~~~k~ 321 (433)
T 3kl4_A 244 IITKMDGTAKGGGALSAVVATGATIKFIGTGEKIDELETFNAKRFVSRILGM--GDIESILEKVKGLEEYDKIQKKMEDV 321 (433)
T ss_dssp EEECGGGCSCHHHHHHHHHHHTCEEEEEECCSSSSCEEECCHHHHHHHHHCS--SHHHHHHHHHHHC-------------
T ss_pred EEecccccccchHHHHHHHHHCCCEEEEECCCChHhCccCCHHHHHHHhcCC--chHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 555554433322111111111222 11 223567777766554 58888887765422111
Q ss_pred CCC--cccHHHHHHHHHHHh
Q 007575 559 NKV--VVEKIDFIHAVERSI 576 (597)
Q Consensus 559 ~~~--~It~~d~~~Al~~v~ 576 (597)
.+. ..|.+||.+-++.+.
T Consensus 322 ~~g~~~f~~~d~~~q~~~~~ 341 (433)
T 3kl4_A 322 MEGKGKLTLRDVYAQIIALR 341 (433)
T ss_dssp ------CCHHHHHHHHHHHH
T ss_pred HcCCCCCCHHHHHHHHHHHH
Confidence 122 689999998888764
No 162
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=96.95 E-value=0.00052 Score=65.28 Aligned_cols=32 Identities=31% Similarity=0.702 Sum_probs=28.4
Q ss_pred CCceEEeCCCCChHHHHHHHHHHhcCCCeeee
Q 007575 365 PRGVLLVGLPGTGKTLLAKAVAGEAEVPFISC 396 (597)
Q Consensus 365 p~gVLL~GPPGTGKT~LArAIA~el~~pfi~i 396 (597)
+.-|+|.|+||+|||++|+.+++.++.+++..
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~~lg~~~i~~ 49 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAEACGYPFIEG 49 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHHHHTCCEEEG
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCEEEeC
Confidence 56799999999999999999999998877653
No 163
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=96.94 E-value=0.00043 Score=63.70 Aligned_cols=31 Identities=23% Similarity=0.450 Sum_probs=27.6
Q ss_pred CceEEeCCCCChHHHHHHHHHHhcCCCeeee
Q 007575 366 RGVLLVGLPGTGKTLLAKAVAGEAEVPFISC 396 (597)
Q Consensus 366 ~gVLL~GPPGTGKT~LArAIA~el~~pfi~i 396 (597)
+.|+|.|+||+|||++|+.++..++.+++..
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~lg~~~id~ 33 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELARALGYEFVDT 33 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHHHHHTCEEEEH
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhCCcEEcc
Confidence 4589999999999999999999999887653
No 164
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=96.94 E-value=0.00061 Score=71.91 Aligned_cols=68 Identities=25% Similarity=0.336 Sum_probs=44.2
Q ss_pred ceEEeCCCCChHHHHHHHHHHhcC----CCeeeech-hhhH---------HHHhhcchHHHHHHHHHHHhcCCeEEEEcC
Q 007575 367 GVLLVGLPGTGKTLLAKAVAGEAE----VPFISCSA-SEFV---------ELYVGMGASRVRDLFARAKKEAPSIIFIDE 432 (597)
Q Consensus 367 gVLL~GPPGTGKT~LArAIA~el~----~pfi~is~-sef~---------~~~vG~~e~~vr~lF~~A~~~aP~ILfIDE 432 (597)
.++|.||+|+|||++.+++++... ..++.+.- .++. ...++.......+.+..|....|.||++||
T Consensus 125 ~i~I~GptGSGKTTlL~~l~g~~~~~~~~~i~t~ed~~e~~~~~~~~~v~q~~~~~~~~~~~~~La~aL~~~PdvillDE 204 (356)
T 3jvv_A 125 LVLVTGPTGSGKSTTLAAMLDYLNNTKYHHILTIEDPIEFVHESKKCLVNQREVHRDTLGFSEALRSALREDPDIILVGE 204 (356)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHHHHHCCCEEEEEESSCCSCCCCSSSEEEEEEBTTTBSCHHHHHHHHTTSCCSEEEESC
T ss_pred EEEEECCCCCCHHHHHHHHHhcccCCCCcEEEEccCcHHhhhhccccceeeeeeccccCCHHHHHHHHhhhCcCEEecCC
Confidence 589999999999999999988652 22222210 0110 001111223455678888889999999999
Q ss_pred cc
Q 007575 433 ID 434 (597)
Q Consensus 433 ID 434 (597)
+-
T Consensus 205 p~ 206 (356)
T 3jvv_A 205 MR 206 (356)
T ss_dssp CC
T ss_pred CC
Confidence 83
No 165
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=96.93 E-value=0.00037 Score=63.33 Aligned_cols=29 Identities=34% Similarity=0.589 Sum_probs=25.9
Q ss_pred ceEEeCCCCChHHHHHHHHHHhcCCCeeee
Q 007575 367 GVLLVGLPGTGKTLLAKAVAGEAEVPFISC 396 (597)
Q Consensus 367 gVLL~GPPGTGKT~LArAIA~el~~pfi~i 396 (597)
-|+|+||||+|||++|+.+ ..+|.+++.+
T Consensus 3 ~I~l~G~~GsGKsT~a~~L-~~~g~~~i~~ 31 (179)
T 3lw7_A 3 VILITGMPGSGKSEFAKLL-KERGAKVIVM 31 (179)
T ss_dssp EEEEECCTTSCHHHHHHHH-HHTTCEEEEH
T ss_pred EEEEECCCCCCHHHHHHHH-HHCCCcEEEH
Confidence 4889999999999999999 8889887764
No 166
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=96.93 E-value=0.00041 Score=66.99 Aligned_cols=33 Identities=21% Similarity=0.369 Sum_probs=28.8
Q ss_pred CCCceEEeCCCCChHHHHHHHHHHhcCCCeeee
Q 007575 364 PPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISC 396 (597)
Q Consensus 364 ~p~gVLL~GPPGTGKT~LArAIA~el~~pfi~i 396 (597)
.+..|+|.|+||+|||++++.+|..++.+++..
T Consensus 3 ~~~~I~l~G~~GsGKsT~a~~La~~l~~~~i~~ 35 (220)
T 1aky_A 3 ESIRMVLIGPPGAGKGTQAPNLQERFHAAHLAT 35 (220)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHcCceEEeh
Confidence 356799999999999999999999999877654
No 167
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=96.93 E-value=0.00035 Score=64.46 Aligned_cols=31 Identities=26% Similarity=0.439 Sum_probs=25.2
Q ss_pred CCceEEeCCCCChHHHHHHHHHH-hcCCCeee
Q 007575 365 PRGVLLVGLPGTGKTLLAKAVAG-EAEVPFIS 395 (597)
Q Consensus 365 p~gVLL~GPPGTGKT~LArAIA~-el~~pfi~ 395 (597)
|.-|+|.|+||+|||++|+.++. ..+.+++.
T Consensus 2 ~~~I~i~G~~GsGKST~a~~L~~~~~~~~~i~ 33 (181)
T 1ly1_A 2 KKIILTIGCPGSGKSTWAREFIAKNPGFYNIN 33 (181)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHSTTEEEEC
T ss_pred CeEEEEecCCCCCHHHHHHHHHhhcCCcEEec
Confidence 45689999999999999999998 55555443
No 168
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=96.92 E-value=0.00066 Score=68.69 Aligned_cols=29 Identities=24% Similarity=0.311 Sum_probs=24.4
Q ss_pred CCCCCCceEEeCCCCChHHHHHHHHHHhc
Q 007575 361 GARPPRGVLLVGLPGTGKTLLAKAVAGEA 389 (597)
Q Consensus 361 g~~~p~gVLL~GPPGTGKT~LArAIA~el 389 (597)
|..+..-++|.||||+|||+|++.+|+.+
T Consensus 31 ~l~~G~~~~i~G~~G~GKTTl~~~ia~~~ 59 (296)
T 1cr0_A 31 GARGGEVIMVTSGSGMGKSTFVRQQALQW 59 (296)
T ss_dssp SBCTTCEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCCCCeEEEEEeCCCCCHHHHHHHHHHHH
Confidence 45556678999999999999999998764
No 169
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=96.92 E-value=0.0004 Score=65.12 Aligned_cols=33 Identities=21% Similarity=0.349 Sum_probs=28.7
Q ss_pred CCCceEEeCCCCChHHHHHHHHHHhcCCCeeee
Q 007575 364 PPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISC 396 (597)
Q Consensus 364 ~p~gVLL~GPPGTGKT~LArAIA~el~~pfi~i 396 (597)
.+.-|+|.|+||+|||++++.++..++.+++..
T Consensus 8 ~~~~I~l~G~~GsGKsT~~~~La~~l~~~~i~~ 40 (196)
T 2c95_A 8 KTNIIFVVGGPGSGKGTQCEKIVQKYGYTHLST 40 (196)
T ss_dssp TSCEEEEEECTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHhCCeEEcH
Confidence 345699999999999999999999999887654
No 170
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=96.92 E-value=0.0012 Score=61.68 Aligned_cols=21 Identities=38% Similarity=0.558 Sum_probs=17.9
Q ss_pred CCCceEEeCCCCChHHHHHHH
Q 007575 364 PPRGVLLVGLPGTGKTLLAKA 384 (597)
Q Consensus 364 ~p~gVLL~GPPGTGKT~LArA 384 (597)
.+.-+.|.||+|+|||+|+++
T Consensus 8 ~gei~~l~G~nGsGKSTl~~~ 28 (171)
T 4gp7_A 8 ELSLVVLIGSSGSGKSTFAKK 28 (171)
T ss_dssp SSEEEEEECCTTSCHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHH
Confidence 344588999999999999994
No 171
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=96.91 E-value=0.00048 Score=68.78 Aligned_cols=32 Identities=28% Similarity=0.314 Sum_probs=28.9
Q ss_pred ceEEeCCCCChHHHHHHHHHHhcCCCeeeech
Q 007575 367 GVLLVGLPGTGKTLLAKAVAGEAEVPFISCSA 398 (597)
Q Consensus 367 gVLL~GPPGTGKT~LArAIA~el~~pfi~is~ 398 (597)
-++|.||||+|||++|+++|++++.+++..+.
T Consensus 3 li~I~G~~GSGKSTla~~La~~~~~~~i~~D~ 34 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDMAIQIAQETGWPVVALDR 34 (253)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHCCCEEECCS
T ss_pred EEEEECCCCcCHHHHHHHHHhcCCCeEEeccH
Confidence 47899999999999999999999999887654
No 172
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=96.90 E-value=0.003 Score=62.29 Aligned_cols=37 Identities=27% Similarity=0.296 Sum_probs=28.9
Q ss_pred ceEEeCCCCChHHHHHHHHHHhcCCCeeeechh-hhHH
Q 007575 367 GVLLVGLPGTGKTLLAKAVAGEAEVPFISCSAS-EFVE 403 (597)
Q Consensus 367 gVLL~GPPGTGKT~LArAIA~el~~pfi~is~s-ef~~ 403 (597)
.++++||+|+|||.+|.+++.+.+.+++.+... ++..
T Consensus 110 ~~ll~~~tG~GKT~~a~~~~~~~~~~~liv~P~~~L~~ 147 (237)
T 2fz4_A 110 RGCIVLPTGSGKTHVAMAAINELSTPTLIVVPTLALAE 147 (237)
T ss_dssp EEEEEESSSTTHHHHHHHHHHHSCSCEEEEESSHHHHH
T ss_pred CEEEEeCCCCCHHHHHHHHHHHcCCCEEEEeCCHHHHH
Confidence 489999999999999999998887666665433 4443
No 173
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=96.88 E-value=0.00043 Score=67.31 Aligned_cols=33 Identities=21% Similarity=0.418 Sum_probs=28.4
Q ss_pred CCCceEEeCCCCChHHHHHHHHHHhcCCCeeee
Q 007575 364 PPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISC 396 (597)
Q Consensus 364 ~p~gVLL~GPPGTGKT~LArAIA~el~~pfi~i 396 (597)
.+..|+|.|+||+|||++++.++.+++.+++..
T Consensus 6 ~~~~I~l~G~~GsGKsT~a~~La~~l~~~~i~~ 38 (227)
T 1zd8_A 6 RLLRAVIMGAPGSGKGTVSSRITTHFELKHLSS 38 (227)
T ss_dssp -CCEEEEEECTTSSHHHHHHHHHHHSSSEEEEH
T ss_pred cCcEEEEECCCCCCHHHHHHHHHHHcCCeEEec
Confidence 456799999999999999999999998877654
No 174
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=96.85 E-value=0.00048 Score=63.98 Aligned_cols=30 Identities=23% Similarity=0.267 Sum_probs=23.7
Q ss_pred CCceEEeCCCCChHHHHHHHHHHhcCCCee
Q 007575 365 PRGVLLVGLPGTGKTLLAKAVAGEAEVPFI 394 (597)
Q Consensus 365 p~gVLL~GPPGTGKT~LArAIA~el~~pfi 394 (597)
|.-|+|.|+||+|||++|+.++..++.+++
T Consensus 5 ~~~I~l~G~~GsGKST~a~~La~~l~~~~i 34 (183)
T 2vli_A 5 SPIIWINGPFGVGKTHTAHTLHERLPGSFV 34 (183)
T ss_dssp CCEEEEECCC----CHHHHHHHHHSTTCEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhcCCCEE
Confidence 456899999999999999999999999987
No 175
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=96.84 E-value=0.00044 Score=66.92 Aligned_cols=33 Identities=24% Similarity=0.444 Sum_probs=28.5
Q ss_pred CCCceEEeCCCCChHHHHHHHHHHhcCCCeeee
Q 007575 364 PPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISC 396 (597)
Q Consensus 364 ~p~gVLL~GPPGTGKT~LArAIA~el~~pfi~i 396 (597)
.|..|+|.||||+|||++++.+|..++.+++.+
T Consensus 4 ~~~~I~l~G~~GsGKsT~~~~La~~l~~~~i~~ 36 (222)
T 1zak_A 4 DPLKVMISGAPASGKGTQCELIKTKYQLAHISA 36 (222)
T ss_dssp CSCCEEEEESTTSSHHHHHHHHHHHHCCEECCH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhCCceecH
Confidence 456799999999999999999999999766543
No 176
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=96.83 E-value=0.00057 Score=65.60 Aligned_cols=30 Identities=33% Similarity=0.654 Sum_probs=26.9
Q ss_pred ceEEeCCCCChHHHHHHHHHHhcCCCeeee
Q 007575 367 GVLLVGLPGTGKTLLAKAVAGEAEVPFISC 396 (597)
Q Consensus 367 gVLL~GPPGTGKT~LArAIA~el~~pfi~i 396 (597)
.|+|.||||+|||++|+.++.+++.+++..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~~~~~i~~ 31 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVEKYGIPHIST 31 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHSSCCEEEH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEEeH
Confidence 378999999999999999999998887755
No 177
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=96.83 E-value=0.00048 Score=64.71 Aligned_cols=37 Identities=19% Similarity=0.390 Sum_probs=29.8
Q ss_pred CCceEEeCCCCChHHHHHHHHHHhcCCCeeeechhhhHH
Q 007575 365 PRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFVE 403 (597)
Q Consensus 365 p~gVLL~GPPGTGKT~LArAIA~el~~pfi~is~sef~~ 403 (597)
+.-|+|.|+||+|||++|+.++..++.+++.. +++..
T Consensus 12 ~~~I~l~G~~GsGKsT~a~~L~~~l~~~~i~~--d~~~~ 48 (199)
T 2bwj_A 12 CKIIFIIGGPGSGKGTQCEKLVEKYGFTHLST--GELLR 48 (199)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHHHHTCEEEEH--HHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhCCeEEcH--HHHHH
Confidence 45699999999999999999999998766544 44433
No 178
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=96.83 E-value=0.00042 Score=67.08 Aligned_cols=37 Identities=22% Similarity=0.487 Sum_probs=30.3
Q ss_pred CCceEEeCCCCChHHHHHHHHHHhcCCCeeeechhhhHH
Q 007575 365 PRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFVE 403 (597)
Q Consensus 365 p~gVLL~GPPGTGKT~LArAIA~el~~pfi~is~sef~~ 403 (597)
+..|+|.|+||+|||++|+.+|..++.+++.. ++++.
T Consensus 5 ~~~I~l~G~~GsGKsT~a~~La~~l~~~~i~~--d~li~ 41 (217)
T 3be4_A 5 KHNLILIGAPGSGKGTQCEFIKKEYGLAHLST--GDMLR 41 (217)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHHHCCEEEEH--HHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHhCceEEeh--hHHHH
Confidence 34689999999999999999999999887754 34443
No 179
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=96.83 E-value=0.0042 Score=61.66 Aligned_cols=163 Identities=22% Similarity=0.292 Sum_probs=85.5
Q ss_pred CceEEeCCCCChHHHHHHHHHHhc---CCCeeeechh-----hhHHHHhhc---------------chHHHHHHHHHHHh
Q 007575 366 RGVLLVGLPGTGKTLLAKAVAGEA---EVPFISCSAS-----EFVELYVGM---------------GASRVRDLFARAKK 422 (597)
Q Consensus 366 ~gVLL~GPPGTGKT~LArAIA~el---~~pfi~is~s-----ef~~~~vG~---------------~e~~vr~lF~~A~~ 422 (597)
..|++.|+||+|||++|-.+|.++ |..+..++.. +......+. .+..+..++ .
T Consensus 7 l~I~~~~kgGvGKTt~a~~la~~l~~~G~~V~v~d~D~q~~~~~~al~~gl~~~~~~~~~~~~~~~~e~~l~~~L----~ 82 (228)
T 2r8r_A 7 LKVFLGAAPGVGKTYAMLQAAHAQLRQGVRVMAGVVETHGRAETEALLNGLPQQPLLRTEYRGMTLEEMDLDALL----K 82 (228)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEECCCTTCHHHHHHHTTSCBCCCEEEEETTEEEEECCHHHHH----H
T ss_pred EEEEEECCCCCcHHHHHHHHHHHHHHCCCCEEEEEeCCCCChhHHHHhcCccccCcceeecCCcccccccHHHHH----h
Confidence 469999999999999999988764 6555444332 111111111 112333332 2
Q ss_pred cCCeEEEEcCcchhhhhcCCcccccchhHHHHHHHHHHHHhcCCCCCCcEEEEEecCC------------------CCCC
Q 007575 423 EAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATNR------------------SDVL 484 (597)
Q Consensus 423 ~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~eqtLnqLL~emdg~~~~~~VIVIaaTNr------------------pd~L 484 (597)
..|.+|+|||+-...... ..+..+-+.+..++ ..++=|++|+|. .+.+
T Consensus 83 ~~pdlvIVDElG~~~~~~------~r~~~~~qDV~~~l--------~sgidVitT~Nlqh~esl~d~v~~itg~~v~e~v 148 (228)
T 2r8r_A 83 AAPSLVLVDELAHTNAPG------SRHTKRWQDIQELL--------AAGIDVYTTVNVQHLESLNDQVRGITGVQVRETL 148 (228)
T ss_dssp HCCSEEEESCTTCBCCTT------CSSSBHHHHHHHHH--------HTTCEEEEEEEGGGBGGGHHHHHHHHSCCCCSCB
T ss_pred cCCCEEEEeCCCCCCccc------chhHHHHHHHHHHH--------cCCCCEEEEccccccccHHHHHHHHcCCCcCCcC
Confidence 468899999986542111 11112222222221 134456677762 1455
Q ss_pred ChhhhCCCCcceEEEecCCCHHHHHHHHHHHHhcCCCCCCCCCCHHHHHHhCCCCCHHHHHHHHHHHHHHHHh
Q 007575 485 DPALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTTGFTGADLANLVNEAALLAGR 557 (597)
Q Consensus 485 D~aLlRpgRFd~~I~v~~Pd~~eR~eILk~~l~~~~~~l~~dvdl~~LA~~t~G~SgaDL~~Lv~eAal~A~r 557 (597)
+..++. +.|.++.++.|..+ +++. ++...+-..+.. -..+.. -|+...|..|-.-|...++.
T Consensus 149 pd~~~~--~a~~v~lvD~~p~~----l~~r-l~~g~vy~~~~~-~~a~~~---~f~~~nl~~lrelal~~~a~ 210 (228)
T 2r8r_A 149 PDWVLQ--EAFDLVLIDLPPRE----LLER-LRDGKVYVPEQA-RAAIDA---FFTQTNLTALREMAMQTAAA 210 (228)
T ss_dssp CHHHHH--TCSEEEEBCCCHHH----HHHH-HHTTCCCCTTCC-HHHHHH---HCCHHHHHHHHHHHHHHHHT
T ss_pred ccHHHh--hCCeEEEecCCHHH----HHHH-HHCCCccChhHH-HHHHHh---hhchhhHHHHHHHHHHHHHH
Confidence 666766 67888888887654 3333 332222222222 222222 26677777765545555543
No 180
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=96.82 E-value=0.0013 Score=71.09 Aligned_cols=38 Identities=26% Similarity=0.217 Sum_probs=29.4
Q ss_pred CCCCCCceEEeCCCCChHHHHHHHHHHhc----CCCeeeech
Q 007575 361 GARPPRGVLLVGLPGTGKTLLAKAVAGEA----EVPFISCSA 398 (597)
Q Consensus 361 g~~~p~gVLL~GPPGTGKT~LArAIA~el----~~pfi~is~ 398 (597)
|..+..-++|.|+||+|||+||..+|..+ +.+++.++.
T Consensus 196 Gl~~G~l~ii~G~pg~GKT~lal~ia~~~a~~~g~~vl~~sl 237 (444)
T 2q6t_A 196 TLGPGSLNIIAARPAMGKTAFALTIAQNAALKEGVGVGIYSL 237 (444)
T ss_dssp CCCTTCEEEEEECTTSCHHHHHHHHHHHHHHTTCCCEEEEES
T ss_pred CcCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEEC
Confidence 56666678999999999999999987643 556666554
No 181
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=96.82 E-value=0.00078 Score=62.79 Aligned_cols=38 Identities=26% Similarity=0.378 Sum_probs=31.9
Q ss_pred CCCceEEeCCCCChHHHHHHHHHHhc---CCCeeeechhhh
Q 007575 364 PPRGVLLVGLPGTGKTLLAKAVAGEA---EVPFISCSASEF 401 (597)
Q Consensus 364 ~p~gVLL~GPPGTGKT~LArAIA~el---~~pfi~is~sef 401 (597)
.+..+.|.|++|+|||++++.+++.+ |.|++.++...+
T Consensus 4 ~g~~i~l~G~~GsGKST~~~~L~~~l~~~g~~~i~~d~~~~ 44 (179)
T 2pez_A 4 RGCTVWLTGLSGAGKTTVSMALEEYLVCHGIPCYTLDGDNI 44 (179)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHhhCCCcEEEECChHH
Confidence 34568899999999999999999987 899988875443
No 182
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=96.81 E-value=0.0004 Score=64.76 Aligned_cols=31 Identities=32% Similarity=0.477 Sum_probs=27.0
Q ss_pred CceEEeCCCCChHHHHHHHHHHhcCCCeeee
Q 007575 366 RGVLLVGLPGTGKTLLAKAVAGEAEVPFISC 396 (597)
Q Consensus 366 ~gVLL~GPPGTGKT~LArAIA~el~~pfi~i 396 (597)
..|+|.|+||+|||++++.++..++.+++..
T Consensus 5 ~~I~l~G~~GsGKST~~~~La~~l~~~~i~~ 35 (186)
T 3cm0_A 5 QAVIFLGPPGAGKGTQASRLAQELGFKKLST 35 (186)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHHTCEEECH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCeEecH
Confidence 4589999999999999999999998776543
No 183
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=96.79 E-value=0.00064 Score=66.53 Aligned_cols=32 Identities=28% Similarity=0.332 Sum_probs=28.4
Q ss_pred CCceEEeCCCCChHHHHHHHHHHhcCCCeeee
Q 007575 365 PRGVLLVGLPGTGKTLLAKAVAGEAEVPFISC 396 (597)
Q Consensus 365 p~gVLL~GPPGTGKT~LArAIA~el~~pfi~i 396 (597)
+..|+|.|+||+|||++|+.+|.+++.+++..
T Consensus 16 ~~~I~l~G~~GsGKsT~a~~La~~l~~~~i~~ 47 (233)
T 1ak2_A 16 GVRAVLLGPPGAGKGTQAPKLAKNFCVCHLAT 47 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHTCEEEEH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCceecH
Confidence 45799999999999999999999999877654
No 184
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=96.79 E-value=0.00047 Score=64.16 Aligned_cols=25 Identities=24% Similarity=0.478 Sum_probs=23.0
Q ss_pred CceEEeCCCCChHHHHHHHHHHhcC
Q 007575 366 RGVLLVGLPGTGKTLLAKAVAGEAE 390 (597)
Q Consensus 366 ~gVLL~GPPGTGKT~LArAIA~el~ 390 (597)
.-|+|.|+||+|||++++.++..++
T Consensus 4 ~~I~i~G~~GsGKsT~~~~L~~~l~ 28 (192)
T 1kht_A 4 KVVVVTGVPGVGSTTSSQLAMDNLR 28 (192)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHH
Confidence 4689999999999999999999876
No 185
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=96.79 E-value=0.0066 Score=62.49 Aligned_cols=37 Identities=27% Similarity=0.214 Sum_probs=28.4
Q ss_pred CCCCCCceEEeCCCCChHHHHHHHHHHhc---CCCeeeec
Q 007575 361 GARPPRGVLLVGLPGTGKTLLAKAVAGEA---EVPFISCS 397 (597)
Q Consensus 361 g~~~p~gVLL~GPPGTGKT~LArAIA~el---~~pfi~is 397 (597)
|..+..-++|.|+||+|||+||..+|..+ +.+++.++
T Consensus 64 Gl~~G~l~li~G~pG~GKTtl~l~ia~~~a~~g~~vl~~s 103 (315)
T 3bh0_A 64 GYKRRNFVLIAARPSMGKTAFALKQAKNMSDNDDVVNLHS 103 (315)
T ss_dssp SBCTTCEEEEECCTTSSHHHHHHHHHHHHHTTTCEEEEEE
T ss_pred CCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEE
Confidence 55666679999999999999999998653 44555554
No 186
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=96.79 E-value=0.0006 Score=64.69 Aligned_cols=34 Identities=18% Similarity=0.324 Sum_probs=28.8
Q ss_pred CCCceEEeCCCCChHHHHHHHHHHhcCCCeeeec
Q 007575 364 PPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCS 397 (597)
Q Consensus 364 ~p~gVLL~GPPGTGKT~LArAIA~el~~pfi~is 397 (597)
.+.-|+|.|+||+|||++++.++.+++.+++..+
T Consensus 14 ~~~~I~l~G~~GsGKsT~~~~L~~~~g~~~i~~d 47 (203)
T 1ukz_A 14 QVSVIFVLGGPGAGKGTQCEKLVKDYSFVHLSAG 47 (203)
T ss_dssp TCEEEEEECSTTSSHHHHHHHHHHHSSCEEEEHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHcCceEEeHH
Confidence 3456899999999999999999999988776543
No 187
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=96.78 E-value=0.00063 Score=65.21 Aligned_cols=30 Identities=40% Similarity=0.732 Sum_probs=26.9
Q ss_pred ceEEeCCCCChHHHHHHHHHHhcCCCeeee
Q 007575 367 GVLLVGLPGTGKTLLAKAVAGEAEVPFISC 396 (597)
Q Consensus 367 gVLL~GPPGTGKT~LArAIA~el~~pfi~i 396 (597)
.|+|.||||+|||++|+.++.+++.+++..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~~~~~i~~ 31 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIEKYEIPHIST 31 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHCCCEEEH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEeeH
Confidence 378999999999999999999999887755
No 188
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=96.76 E-value=0.00061 Score=67.47 Aligned_cols=33 Identities=21% Similarity=0.334 Sum_probs=29.0
Q ss_pred CCCceEEeCCCCChHHHHHHHHHHhcCCCeeee
Q 007575 364 PPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISC 396 (597)
Q Consensus 364 ~p~gVLL~GPPGTGKT~LArAIA~el~~pfi~i 396 (597)
.|..|+|.||||+|||++|+.++.+++.+++++
T Consensus 28 ~~~~I~l~G~~GsGKsT~a~~L~~~~g~~~is~ 60 (243)
T 3tlx_A 28 PDGRYIFLGAPGSGKGTQSLNLKKSHCYCHLST 60 (243)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHhCCeEEec
Confidence 566799999999999999999999998777654
No 189
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=96.75 E-value=0.00071 Score=62.00 Aligned_cols=30 Identities=20% Similarity=0.505 Sum_probs=27.0
Q ss_pred ceEEeCCCCChHHHHHHHHHHhcCCCeeee
Q 007575 367 GVLLVGLPGTGKTLLAKAVAGEAEVPFISC 396 (597)
Q Consensus 367 gVLL~GPPGTGKT~LArAIA~el~~pfi~i 396 (597)
.|+|.|+||+|||++|+.++..++.+++..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~l~~~~i~~ 31 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSRSLNIPFYDV 31 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHHHHTCCEEEH
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCCCEEEC
Confidence 489999999999999999999999887753
No 190
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=96.70 E-value=0.00073 Score=66.53 Aligned_cols=40 Identities=15% Similarity=0.365 Sum_probs=31.8
Q ss_pred CCCCCceEEeCCCCChHHHHHHHHHHhcCCCeeeechhhhHH
Q 007575 362 ARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFVE 403 (597)
Q Consensus 362 ~~~p~gVLL~GPPGTGKT~LArAIA~el~~pfi~is~sef~~ 403 (597)
.+.|+-|+|.||||+||+|.|+.|+.+++.+.++ ..+++.
T Consensus 26 ~~k~kiI~llGpPGsGKgTqa~~L~~~~g~~hIs--tGdllR 65 (217)
T 3umf_A 26 LAKAKVIFVLGGPGSGKGTQCEKLVQKFHFNHLS--SGDLLR 65 (217)
T ss_dssp TTSCEEEEEECCTTCCHHHHHHHHHHHHCCEEEC--HHHHHH
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHHHHHCCceEc--HHHHHH
Confidence 3456678999999999999999999999877654 455543
No 191
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=96.67 E-value=0.0038 Score=61.19 Aligned_cols=28 Identities=18% Similarity=0.196 Sum_probs=23.4
Q ss_pred CCCCceEEeCCCCChHHHHHHHHHHhcC
Q 007575 363 RPPRGVLLVGLPGTGKTLLAKAVAGEAE 390 (597)
Q Consensus 363 ~~p~gVLL~GPPGTGKT~LArAIA~el~ 390 (597)
....-+.|.||+|+|||+|++++++...
T Consensus 14 ~~G~ii~l~GpsGsGKSTLlk~L~g~~~ 41 (219)
T 1s96_A 14 AQGTLYIVSAPSGAGKSSLIQALLKTQP 41 (219)
T ss_dssp -CCCEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhccCC
Confidence 4455688999999999999999999764
No 192
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=96.67 E-value=0.0018 Score=62.20 Aligned_cols=24 Identities=38% Similarity=0.565 Sum_probs=21.0
Q ss_pred CceEEeCCCCChHHHHHHHHHHhc
Q 007575 366 RGVLLVGLPGTGKTLLAKAVAGEA 389 (597)
Q Consensus 366 ~gVLL~GPPGTGKT~LArAIA~el 389 (597)
+.|+|+||+|+|||+|++.+..+.
T Consensus 2 RpIVi~GPSG~GK~Tl~~~L~~~~ 25 (186)
T 1ex7_A 2 RPIVISGPSGTGKSTLLKKLFAEY 25 (186)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHC
T ss_pred CEEEEECCCCCCHHHHHHHHHHhC
Confidence 358999999999999999998753
No 193
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=96.66 E-value=0.00091 Score=61.90 Aligned_cols=31 Identities=29% Similarity=0.523 Sum_probs=26.7
Q ss_pred CCceEEeCCCCChHHHHHHHHHHhcCCCeee
Q 007575 365 PRGVLLVGLPGTGKTLLAKAVAGEAEVPFIS 395 (597)
Q Consensus 365 p~gVLL~GPPGTGKT~LArAIA~el~~pfi~ 395 (597)
+..++|.||||+|||++++.+++.+|.+++.
T Consensus 8 g~~i~l~G~~GsGKSTl~~~l~~~~g~~~i~ 38 (175)
T 1knq_A 8 HHIYVLMGVSGSGKSAVASEVAHQLHAAFLD 38 (175)
T ss_dssp SEEEEEECSTTSCHHHHHHHHHHHHTCEEEE
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHhhCcEEEe
Confidence 3468899999999999999999998876654
No 194
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=96.66 E-value=0.00046 Score=69.56 Aligned_cols=70 Identities=23% Similarity=0.335 Sum_probs=43.6
Q ss_pred CCceEEeCCCCChHHHHHHHHHHhcCCC---eeeechhhh----------H-HHHhhcchHHHHHHHHHHHhcCCeEEEE
Q 007575 365 PRGVLLVGLPGTGKTLLAKAVAGEAEVP---FISCSASEF----------V-ELYVGMGASRVRDLFARAKKEAPSIIFI 430 (597)
Q Consensus 365 p~gVLL~GPPGTGKT~LArAIA~el~~p---fi~is~sef----------~-~~~vG~~e~~vr~lF~~A~~~aP~ILfI 430 (597)
..-++|+||+|+|||++++++++..... -+.+....+ + ...+|.....++..+..+....|.+|++
T Consensus 25 g~~v~i~Gp~GsGKSTll~~l~g~~~~~~~G~I~~~g~~i~~~~~~~~~~v~q~~~gl~~~~l~~~la~aL~~~p~illl 104 (261)
T 2eyu_A 25 MGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIEDPIEYVFKHKKSIVNQREVGEDTKSFADALRAALREDPDVIFV 104 (261)
T ss_dssp SEEEEEECSTTCSHHHHHHHHHHHHHHHCCCEEEEEESSCCSCCCCSSSEEEEEEBTTTBSCHHHHHHHHHHHCCSEEEE
T ss_pred CCEEEEECCCCccHHHHHHHHHHhCCCCCCCEEEEcCCcceeecCCcceeeeHHHhCCCHHHHHHHHHHHHhhCCCEEEe
Confidence 3458899999999999999999864211 111111100 0 0011112234567777777788999999
Q ss_pred cCcc
Q 007575 431 DEID 434 (597)
Q Consensus 431 DEID 434 (597)
||.-
T Consensus 105 DEp~ 108 (261)
T 2eyu_A 105 GEMR 108 (261)
T ss_dssp SCCC
T ss_pred CCCC
Confidence 9983
No 195
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=96.65 E-value=0.001 Score=63.43 Aligned_cols=32 Identities=41% Similarity=0.738 Sum_probs=27.1
Q ss_pred CCCceEEeCCCCChHHHHHHHHHHhcCCCeee
Q 007575 364 PPRGVLLVGLPGTGKTLLAKAVAGEAEVPFIS 395 (597)
Q Consensus 364 ~p~gVLL~GPPGTGKT~LArAIA~el~~pfi~ 395 (597)
.+.-+.|.||+|+|||++++.+++.+|..++.
T Consensus 28 ~g~~i~l~G~~GsGKSTl~~~L~~~~g~~~i~ 59 (200)
T 4eun_A 28 PTRHVVVMGVSGSGKTTIAHGVADETGLEFAE 59 (200)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHHCCEEEE
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHhhCCeEEc
Confidence 45678999999999999999999998765543
No 196
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=96.59 E-value=0.0038 Score=64.43 Aligned_cols=72 Identities=28% Similarity=0.397 Sum_probs=45.9
Q ss_pred CCCCceEEeCCCCChHHHHHHHHHHhc---CCCeeeechhhhH-------HHH---hh----------cchHHHHHHHHH
Q 007575 363 RPPRGVLLVGLPGTGKTLLAKAVAGEA---EVPFISCSASEFV-------ELY---VG----------MGASRVRDLFAR 419 (597)
Q Consensus 363 ~~p~gVLL~GPPGTGKT~LArAIA~el---~~pfi~is~sef~-------~~~---vG----------~~e~~vr~lF~~ 419 (597)
..+.-++|+||+|+|||+++..+|..+ +..+..++++.+. ..+ .+ .....+.+.+..
T Consensus 102 ~~~~vi~ivG~~GsGKTTl~~~LA~~l~~~g~kV~lv~~D~~r~~a~eqL~~~~~~~gl~~~~~~s~~~~~~v~~~al~~ 181 (306)
T 1vma_A 102 EPPFVIMVVGVNGTGKTTSCGKLAKMFVDEGKSVVLAAADTFRAAAIEQLKIWGERVGATVISHSEGADPAAVAFDAVAH 181 (306)
T ss_dssp SSCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECTTCHHHHHHHHHHHHHHTCEEECCSTTCCHHHHHHHHHHH
T ss_pred CCCeEEEEEcCCCChHHHHHHHHHHHHHhcCCEEEEEccccccHHHHHHHHHHHHHcCCcEEecCCccCHHHHHHHHHHH
Confidence 456678999999999999999999865 4444444433211 111 01 111223445666
Q ss_pred HHhcCCeEEEEcCcc
Q 007575 420 AKKEAPSIIFIDEID 434 (597)
Q Consensus 420 A~~~aP~ILfIDEID 434 (597)
+....|.+|+||+.-
T Consensus 182 a~~~~~dvvIiDtpg 196 (306)
T 1vma_A 182 ALARNKDVVIIDTAG 196 (306)
T ss_dssp HHHTTCSEEEEEECC
T ss_pred HHhcCCCEEEEECCC
Confidence 677788999999874
No 197
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=96.57 E-value=0.0021 Score=61.14 Aligned_cols=34 Identities=32% Similarity=0.384 Sum_probs=27.5
Q ss_pred ceEEeCCCCChHHHHHHHHHHhcCCCeeeechhhhHH
Q 007575 367 GVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFVE 403 (597)
Q Consensus 367 gVLL~GPPGTGKT~LArAIA~el~~pfi~is~sef~~ 403 (597)
.+.|.||+|+|||++++.+++ +|.+++ +..++..
T Consensus 4 ~i~l~G~~GsGKST~~~~La~-lg~~~i--d~d~~~~ 37 (206)
T 1jjv_A 4 IVGLTGGIGSGKTTIANLFTD-LGVPLV--DADVVAR 37 (206)
T ss_dssp EEEEECSTTSCHHHHHHHHHT-TTCCEE--EHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH-CCCccc--chHHHHH
Confidence 478999999999999999998 788776 4445443
No 198
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=96.56 E-value=0.0098 Score=57.68 Aligned_cols=117 Identities=13% Similarity=0.134 Sum_probs=69.0
Q ss_pred CceEEeCCCCChHHHHHHHHHHhc---CCCeeee---ch------hhhHHHHh-------------h----cchHHHHHH
Q 007575 366 RGVLLVGLPGTGKTLLAKAVAGEA---EVPFISC---SA------SEFVELYV-------------G----MGASRVRDL 416 (597)
Q Consensus 366 ~gVLL~GPPGTGKT~LArAIA~el---~~pfi~i---s~------sef~~~~v-------------G----~~e~~vr~l 416 (597)
..|++|+++|.|||++|-++|-++ |..+..+ .+ ..++..+. . ......+..
T Consensus 29 g~i~v~tG~GkGKTTaA~GlalRA~g~G~rV~~vQF~Kg~~~~gE~~~l~~L~v~~~~~g~gf~~~~~~~~~~~~~a~~~ 108 (196)
T 1g5t_A 29 GIIIVFTGNGKGKTTAAFGTAARAVGHGKNVGVVQFIKGTWPNGERNLLEPHGVEFQVMATGFTWETQNREADTAACMAV 108 (196)
T ss_dssp CCEEEEESSSSCHHHHHHHHHHHHHHTTCCEEEEESSCCSSCCHHHHHHGGGTCEEEECCTTCCCCGGGHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEeeCCCCCccHHHHHHhCCcEEEEcccccccCCCCcHHHHHHHHHH
Confidence 358999999999999999997764 6555555 22 12333331 0 012344555
Q ss_pred HHHHHh----cCCeEEEEcCcchhhhhcCCcccccchhHHHHHHHHHHHHhcCCCCCCcEEEEEecCCCCCCChhhhCCC
Q 007575 417 FARAKK----EAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATNRSDVLDPALRRPG 492 (597)
Q Consensus 417 F~~A~~----~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~eqtLnqLL~emdg~~~~~~VIVIaaTNrpd~LD~aLlRpg 492 (597)
+..++. ...++|+|||+-....-.- .. ...++..+.... ...-||.|+|.+ +++|+.
T Consensus 109 l~~a~~~l~~~~yDlvILDEi~~al~~g~-----l~-------~~ev~~~l~~Rp--~~~~vIlTGr~a---p~~l~e-- 169 (196)
T 1g5t_A 109 WQHGKRMLADPLLDMVVLDELTYMVAYDY-----LP-------LEEVISALNARP--GHQTVIITGRGC---HRDILD-- 169 (196)
T ss_dssp HHHHHHHTTCTTCSEEEEETHHHHHHTTS-----SC-------HHHHHHHHHTSC--TTCEEEEECSSC---CHHHHH--
T ss_pred HHHHHHHHhcCCCCEEEEeCCCccccCCC-----CC-------HHHHHHHHHhCc--CCCEEEEECCCC---cHHHHH--
Confidence 555554 3467999999965432211 11 133455554322 335566688775 677776
Q ss_pred CcceEEEec
Q 007575 493 RFDRVVMVE 501 (597)
Q Consensus 493 RFd~~I~v~ 501 (597)
.-|.+-++.
T Consensus 170 ~AD~VTem~ 178 (196)
T 1g5t_A 170 LADTVSELR 178 (196)
T ss_dssp HCSEEEECC
T ss_pred hCcceeeec
Confidence 677666654
No 199
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=96.49 E-value=0.0012 Score=63.56 Aligned_cols=30 Identities=30% Similarity=0.468 Sum_probs=26.9
Q ss_pred ceEEeCCCCChHHHHHHHHHHhcCCCeeee
Q 007575 367 GVLLVGLPGTGKTLLAKAVAGEAEVPFISC 396 (597)
Q Consensus 367 gVLL~GPPGTGKT~LArAIA~el~~pfi~i 396 (597)
.|+|.|+||+|||++|+.++..++.+++..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~g~~~i~~ 31 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIMEKYGIPQIST 31 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHCCCEEEH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCeEEeH
Confidence 389999999999999999999999877654
No 200
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=96.48 E-value=0.0014 Score=60.86 Aligned_cols=35 Identities=20% Similarity=0.326 Sum_probs=27.2
Q ss_pred ceEEeCCCCChHHHHHHHHHHhcC---CCeeeechhhh
Q 007575 367 GVLLVGLPGTGKTLLAKAVAGEAE---VPFISCSASEF 401 (597)
Q Consensus 367 gVLL~GPPGTGKT~LArAIA~el~---~pfi~is~sef 401 (597)
-|+|.|+||+|||++++.++..++ .++..++.+++
T Consensus 3 ~I~i~G~~GsGKsT~~~~L~~~l~~~g~~~~~~~~~~~ 40 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVLAKVKEILDNQGINNKIINYGDF 40 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHHTTTCCEEEEEHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHhcCceEEEEECChH
Confidence 489999999999999999999875 33555554444
No 201
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=96.47 E-value=0.0012 Score=64.14 Aligned_cols=33 Identities=33% Similarity=0.532 Sum_probs=27.9
Q ss_pred eEEeCCCCChHHHHHHHHHHhcCCCeeeechhhhH
Q 007575 368 VLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFV 402 (597)
Q Consensus 368 VLL~GPPGTGKT~LArAIA~el~~pfi~is~sef~ 402 (597)
|+|.||||+||+|.|+.||..++.+.++. .+++
T Consensus 3 Iil~GpPGsGKgTqa~~La~~~g~~~ist--Gdll 35 (206)
T 3sr0_A 3 LVFLGPPGAGKGTQAKRLAKEKGFVHIST--GDIL 35 (206)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHCCEEEEH--HHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHHCCeEEcH--HHHH
Confidence 78999999999999999999999887653 4444
No 202
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=96.47 E-value=0.00066 Score=71.72 Aligned_cols=30 Identities=30% Similarity=0.521 Sum_probs=27.3
Q ss_pred CceEEeCCCCChHHHHHHHHHHhcCCCeee
Q 007575 366 RGVLLVGLPGTGKTLLAKAVAGEAEVPFIS 395 (597)
Q Consensus 366 ~gVLL~GPPGTGKT~LArAIA~el~~pfi~ 395 (597)
..++|+||||+|||++++++|+.++.+|+.
T Consensus 25 ~~i~l~G~~G~GKTTl~~~la~~l~~~f~~ 54 (359)
T 2ga8_A 25 VCVILVGSPGSGKSTIAEELCQIINEKYHT 54 (359)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHHHHHHhCCCeee
Confidence 369999999999999999999999988855
No 203
>2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A
Probab=96.47 E-value=0.014 Score=54.99 Aligned_cols=18 Identities=33% Similarity=0.397 Sum_probs=15.4
Q ss_pred CceEEeCCCCChHHHHHH
Q 007575 366 RGVLLVGLPGTGKTLLAK 383 (597)
Q Consensus 366 ~gVLL~GPPGTGKT~LAr 383 (597)
+.+++.+|+|+|||..+-
T Consensus 39 ~~~li~~~TGsGKT~~~~ 56 (207)
T 2gxq_A 39 KDLIGQARTGTGKTLAFA 56 (207)
T ss_dssp CCEEEECCTTSCHHHHHH
T ss_pred CCEEEECCCCChHHHHHH
Confidence 579999999999998643
No 204
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=96.46 E-value=0.001 Score=69.38 Aligned_cols=71 Identities=21% Similarity=0.272 Sum_probs=47.7
Q ss_pred CCceEEeCCCCChHHHHHHHHHHhcCC--Ceeeechhh-h-----HHH--HhhcchHHHHHHHHHHHhcCCeEEEEcCcc
Q 007575 365 PRGVLLVGLPGTGKTLLAKAVAGEAEV--PFISCSASE-F-----VEL--YVGMGASRVRDLFARAKKEAPSIIFIDEID 434 (597)
Q Consensus 365 p~gVLL~GPPGTGKT~LArAIA~el~~--pfi~is~se-f-----~~~--~vG~~e~~vr~lF~~A~~~aP~ILfIDEID 434 (597)
...++|.||+|+|||+|++++++.... -.+.+.... + ... ++..+....+..+..|....|.+|++||.-
T Consensus 171 g~~v~i~G~~GsGKTTll~~l~g~~~~~~g~i~i~~~~e~~~~~~~~~i~~~~ggg~~~r~~la~aL~~~p~ilildE~~ 250 (330)
T 2pt7_A 171 GKNVIVCGGTGSGKTTYIKSIMEFIPKEERIISIEDTEEIVFKHHKNYTQLFFGGNITSADCLKSCLRMRPDRIILGELR 250 (330)
T ss_dssp TCCEEEEESTTSCHHHHHHHGGGGSCTTSCEEEEESSCCCCCSSCSSEEEEECBTTBCHHHHHHHHTTSCCSEEEECCCC
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCcCCCcEEEECCeeccccccchhEEEEEeCCChhHHHHHHHHhhhCCCEEEEcCCC
Confidence 346999999999999999999997632 223332211 0 000 110034566778888888899999999985
Q ss_pred h
Q 007575 435 A 435 (597)
Q Consensus 435 a 435 (597)
.
T Consensus 251 ~ 251 (330)
T 2pt7_A 251 S 251 (330)
T ss_dssp S
T ss_pred h
Confidence 3
No 205
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=96.45 E-value=0.0014 Score=68.36 Aligned_cols=34 Identities=35% Similarity=0.501 Sum_probs=30.0
Q ss_pred CCceEEeCCCCChHHHHHHHHHHhcCCCeeeech
Q 007575 365 PRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSA 398 (597)
Q Consensus 365 p~gVLL~GPPGTGKT~LArAIA~el~~pfi~is~ 398 (597)
++.++|+||+|+|||+||+.+|.+++.+++.++.
T Consensus 5 ~~~i~i~GptGsGKTtla~~La~~l~~~iis~Ds 38 (323)
T 3crm_A 5 PPAIFLMGPTAAGKTDLAMALADALPCELISVDS 38 (323)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHSCEEEEEECT
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHcCCcEEeccc
Confidence 4578999999999999999999999988887753
No 206
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=96.43 E-value=0.0018 Score=62.30 Aligned_cols=30 Identities=27% Similarity=0.359 Sum_probs=26.8
Q ss_pred CceEEeCCCCChHHHHHHHHHHhcCCCeee
Q 007575 366 RGVLLVGLPGTGKTLLAKAVAGEAEVPFIS 395 (597)
Q Consensus 366 ~gVLL~GPPGTGKT~LArAIA~el~~pfi~ 395 (597)
..|.|.||+|+|||++++.+++.++.+++.
T Consensus 6 ~~i~i~G~~GsGKSTl~~~L~~~~g~~~~d 35 (227)
T 1cke_A 6 PVITIDGPSGAGKGTLCKAMAEALQWHLLD 35 (227)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHTCEEEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCCccc
Confidence 458899999999999999999999987764
No 207
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=96.43 E-value=0.002 Score=61.28 Aligned_cols=39 Identities=21% Similarity=0.201 Sum_probs=29.3
Q ss_pred CCCCceEEeCCCCChHHHHHHHHHHhc---CCCeeeechhhh
Q 007575 363 RPPRGVLLVGLPGTGKTLLAKAVAGEA---EVPFISCSASEF 401 (597)
Q Consensus 363 ~~p~gVLL~GPPGTGKT~LArAIA~el---~~pfi~is~sef 401 (597)
..+.-+.|.||+|+|||++++++++.+ |...+.++..++
T Consensus 23 ~~g~~i~l~G~sGsGKSTl~~~La~~l~~~G~~~~~~d~d~~ 64 (200)
T 3uie_A 23 QKGCVIWVTGLSGSGKSTLACALNQMLYQKGKLCYILDGDNV 64 (200)
T ss_dssp SCCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHhcCceEEEecCchh
Confidence 345568899999999999999999987 544345554433
No 208
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=96.42 E-value=0.0029 Score=60.81 Aligned_cols=39 Identities=13% Similarity=0.175 Sum_probs=31.0
Q ss_pred ceEEeCCCCChHHHHHHHHHHhcCCCeeeechhhhHHHHhh
Q 007575 367 GVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFVELYVG 407 (597)
Q Consensus 367 gVLL~GPPGTGKT~LArAIA~el~~pfi~is~sef~~~~vG 407 (597)
.|.|+|++|+|||++++.++..+|.+++. ++++.....+
T Consensus 14 iIgltG~~GSGKSTva~~L~~~lg~~vid--~D~~~~~~~~ 52 (192)
T 2grj_A 14 VIGVTGKIGTGKSTVCEILKNKYGAHVVN--VDRIGHEVLE 52 (192)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHCCEEEE--HHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHhcCCEEEE--CcHHHHHHHH
Confidence 47899999999999999999998988765 4555544433
No 209
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=96.41 E-value=0.0019 Score=60.86 Aligned_cols=33 Identities=15% Similarity=0.125 Sum_probs=28.4
Q ss_pred CCceEEeCCCCChHHHHHHHHHHhc-CCCeeeec
Q 007575 365 PRGVLLVGLPGTGKTLLAKAVAGEA-EVPFISCS 397 (597)
Q Consensus 365 p~gVLL~GPPGTGKT~LArAIA~el-~~pfi~is 397 (597)
+.-|.|.|+||+|||++++.++..+ |.+++.+.
T Consensus 4 ~~~I~l~G~~GsGKsT~~~~L~~~l~g~~~~~~~ 37 (204)
T 2v54_A 4 GALIVFEGLDKSGKTTQCMNIMESIPANTIKYLN 37 (204)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHTSCGGGEEEEE
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHHCCCceEEEe
Confidence 4568999999999999999999998 57777654
No 210
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=96.40 E-value=0.0019 Score=60.17 Aligned_cols=31 Identities=23% Similarity=0.149 Sum_probs=27.6
Q ss_pred ceEEeCCCCChHHHHHHHHHHhc---CCCeeeec
Q 007575 367 GVLLVGLPGTGKTLLAKAVAGEA---EVPFISCS 397 (597)
Q Consensus 367 gVLL~GPPGTGKT~LArAIA~el---~~pfi~is 397 (597)
-|.|.|+||+|||++++.++..+ |.+++..+
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l~~~g~~~i~~d 35 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYEYLKQKGYFVSLYR 35 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEe
Confidence 37899999999999999999987 88888764
No 211
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=96.38 E-value=0.0081 Score=62.94 Aligned_cols=37 Identities=24% Similarity=0.179 Sum_probs=28.4
Q ss_pred CCCCCCceEEeCCCCChHHHHHHHHHHhc---CCCeeeec
Q 007575 361 GARPPRGVLLVGLPGTGKTLLAKAVAGEA---EVPFISCS 397 (597)
Q Consensus 361 g~~~p~gVLL~GPPGTGKT~LArAIA~el---~~pfi~is 397 (597)
|..+..-++|.|+||+|||+||..+|..+ +.++..++
T Consensus 42 Gl~~G~LiiIaG~pG~GKTt~al~ia~~~a~~g~~Vl~fS 81 (338)
T 4a1f_A 42 GFNKGSLVIIGARPSMGKTSLMMNMVLSALNDDRGVAVFS 81 (338)
T ss_dssp SBCTTCEEEEEECTTSCHHHHHHHHHHHHHHTTCEEEEEE
T ss_pred CCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEe
Confidence 45556679999999999999999998763 55655443
No 212
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=96.37 E-value=0.0017 Score=68.69 Aligned_cols=72 Identities=25% Similarity=0.400 Sum_probs=44.8
Q ss_pred CCCCceEEeCCCCChHHHHHHHHHHhcC----CCeeeechh-hh--------HH-HHhhcchHHHHHHHHHHHhcCCeEE
Q 007575 363 RPPRGVLLVGLPGTGKTLLAKAVAGEAE----VPFISCSAS-EF--------VE-LYVGMGASRVRDLFARAKKEAPSII 428 (597)
Q Consensus 363 ~~p~gVLL~GPPGTGKT~LArAIA~el~----~pfi~is~s-ef--------~~-~~vG~~e~~vr~lF~~A~~~aP~IL 428 (597)
.+...++|+||+|+|||++++++++.+. ..++.+..+ ++ +. ..+|.....++..+..+....|.+|
T Consensus 134 ~~g~~i~ivG~~GsGKTTll~~l~~~~~~~~~g~I~~~e~~~e~~~~~~~~~v~Q~~~g~~~~~~~~~l~~~L~~~pd~i 213 (372)
T 2ewv_A 134 RKMGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIEDPIEYVFKHKKSIVNQREVGEDTKSFADALRAALREDPDVI 213 (372)
T ss_dssp SSSEEEEEECSSSSSHHHHHHHHHHHHHHHSCCEEEEEESSCCSCCCCSSSEEEEEEBTTTBSCSHHHHHHHTTSCCSEE
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHhhcCcCCCcEEEEecccHhhhhccCceEEEeeecCCCHHHHHHHHHHHhhhCcCEE
Confidence 3445689999999999999999998642 222222110 00 00 0011122334567777777889999
Q ss_pred EEcCcc
Q 007575 429 FIDEID 434 (597)
Q Consensus 429 fIDEID 434 (597)
++||+-
T Consensus 214 lldE~~ 219 (372)
T 2ewv_A 214 FVGEMR 219 (372)
T ss_dssp EESCCC
T ss_pred EECCCC
Confidence 999983
No 213
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=96.35 E-value=0.0015 Score=61.94 Aligned_cols=34 Identities=18% Similarity=0.282 Sum_probs=27.8
Q ss_pred ceEEeCCCCChHHHHHHHHHHhcCCCeeeechhhhHH
Q 007575 367 GVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFVE 403 (597)
Q Consensus 367 gVLL~GPPGTGKT~LArAIA~el~~pfi~is~sef~~ 403 (597)
.|.|.|++|+|||++++.+++ +|++++.. +++..
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~-~g~~~i~~--d~~~~ 36 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFRE-LGAYVLDA--DKLIH 36 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHH-TTCEEEEH--HHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHH-CCCEEEEc--cHHHH
Confidence 488999999999999999999 88777654 44443
No 214
>3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H RNA-binding helicase, innate immunity, IFIH1, S genomics; 1.60A {Homo sapiens}
Probab=96.34 E-value=0.016 Score=54.48 Aligned_cols=23 Identities=26% Similarity=0.447 Sum_probs=19.8
Q ss_pred CceEEeCCCCChHHHHHHHHHHh
Q 007575 366 RGVLLVGLPGTGKTLLAKAVAGE 388 (597)
Q Consensus 366 ~gVLL~GPPGTGKT~LArAIA~e 388 (597)
+.+++.+|+|+|||+++-.++.+
T Consensus 49 ~~~li~~~tGsGKT~~~~~~~~~ 71 (216)
T 3b6e_A 49 KNIIICLPTGSGKTRVAVYIAKD 71 (216)
T ss_dssp CCEEEECSCHHHHHHHHHHHHHH
T ss_pred CCEEEEcCCCCCHHHHHHHHHHH
Confidence 46999999999999998877664
No 215
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=96.30 E-value=0.0019 Score=60.72 Aligned_cols=30 Identities=13% Similarity=0.309 Sum_probs=26.5
Q ss_pred ceEEeCCCCChHHHHHHHHHHhcCCCeeee
Q 007575 367 GVLLVGLPGTGKTLLAKAVAGEAEVPFISC 396 (597)
Q Consensus 367 gVLL~GPPGTGKT~LArAIA~el~~pfi~i 396 (597)
.|.|.|+||+|||++++.+++.++.+++..
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~l~~~~~~e 31 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKKLGYEIFKE 31 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHCCEEECC
T ss_pred EEEEECCCccCHHHHHHHHHHhcCCcEEcc
Confidence 378999999999999999999999877643
No 216
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=96.30 E-value=0.0023 Score=60.49 Aligned_cols=30 Identities=33% Similarity=0.503 Sum_probs=27.4
Q ss_pred ceEEeCCCCChHHHHHHHHHHhcCCCeeee
Q 007575 367 GVLLVGLPGTGKTLLAKAVAGEAEVPFISC 396 (597)
Q Consensus 367 gVLL~GPPGTGKT~LArAIA~el~~pfi~i 396 (597)
.|.|.|++|+|||++++.+|+.++.+++..
T Consensus 4 ~i~i~G~~GsGKst~~~~la~~lg~~~~d~ 33 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAAALGVPYLSS 33 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHTCCEEEH
T ss_pred EEEEECCCCCCHHHHHHHHHHhcCCceecc
Confidence 588999999999999999999999888754
No 217
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=96.27 E-value=0.0022 Score=63.44 Aligned_cols=39 Identities=15% Similarity=0.117 Sum_probs=31.6
Q ss_pred CCCceEEeCCCCChHHHHHHHHHHhcCCCee--------eechhhhH
Q 007575 364 PPRGVLLVGLPGTGKTLLAKAVAGEAEVPFI--------SCSASEFV 402 (597)
Q Consensus 364 ~p~gVLL~GPPGTGKT~LArAIA~el~~pfi--------~is~sef~ 402 (597)
.|.-|.|.|++|+|||++|+.++..++.+++ .++.+++.
T Consensus 21 ~~~iI~I~G~~GSGKST~a~~L~~~lg~~~~d~~~~~~~~i~~D~~~ 67 (252)
T 1uj2_A 21 EPFLIGVSGGTASGKSSVCAKIVQLLGQNEVDYRQKQVVILSQDSFY 67 (252)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHTTGGGSCGGGCSEEEEEGGGGB
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHHhhhhcccccCCceEEEecCccc
Confidence 3556899999999999999999999998743 46666654
No 218
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=96.26 E-value=0.0019 Score=62.80 Aligned_cols=35 Identities=20% Similarity=0.368 Sum_probs=28.2
Q ss_pred ceEEeCCCCChHHHHHHHHHHhcCCCeeeechhhhHH
Q 007575 367 GVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFVE 403 (597)
Q Consensus 367 gVLL~GPPGTGKT~LArAIA~el~~pfi~is~sef~~ 403 (597)
-|+|.|+||+|||++++.++..++.+++. ..+++.
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~~lg~~~i~--~dd~~r 36 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKDKYSLAHIE--SGGIFR 36 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHTCEEEE--HHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCeEEc--hHHHHH
Confidence 37899999999999999999999876654 444443
No 219
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=96.25 E-value=0.0014 Score=62.31 Aligned_cols=32 Identities=16% Similarity=0.186 Sum_probs=26.3
Q ss_pred CCCceEEeCCCCChHHHHHHHHHHhcCCCeee
Q 007575 364 PPRGVLLVGLPGTGKTLLAKAVAGEAEVPFIS 395 (597)
Q Consensus 364 ~p~gVLL~GPPGTGKT~LArAIA~el~~pfi~ 395 (597)
.+.-|+|.|+||+|||++++.++..++.+++.
T Consensus 9 ~~~~I~l~G~~GsGKST~~~~L~~~l~~~~~~ 40 (212)
T 2wwf_A 9 KGKFIVFEGLDRSGKSTQSKLLVEYLKNNNVE 40 (212)
T ss_dssp CSCEEEEEESTTSSHHHHHHHHHHHHHHTTCC
T ss_pred cCCEEEEEcCCCCCHHHHHHHHHHHHHHcCCc
Confidence 35668999999999999999999987655443
No 220
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=96.24 E-value=0.0022 Score=60.28 Aligned_cols=37 Identities=19% Similarity=0.267 Sum_probs=29.6
Q ss_pred CCceEEeCCCCChHHHHHHHHHHhcCCCeeeechhhhHHH
Q 007575 365 PRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFVEL 404 (597)
Q Consensus 365 p~gVLL~GPPGTGKT~LArAIA~el~~pfi~is~sef~~~ 404 (597)
+..|.|.|++|+|||++++.++.. |.+++. ..++...
T Consensus 8 ~~~I~i~G~~GsGKST~~~~La~~-g~~~id--~d~~~~~ 44 (203)
T 1uf9_A 8 PIIIGITGNIGSGKSTVAALLRSW-GYPVLD--LDALAAR 44 (203)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHHT-TCCEEE--HHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHC-CCEEEc--ccHHHHH
Confidence 456899999999999999999998 877664 4555443
No 221
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=96.24 E-value=0.005 Score=62.02 Aligned_cols=37 Identities=22% Similarity=0.432 Sum_probs=28.0
Q ss_pred CCceEEeCCCCChHHHHHHHHHHhc-CCCeeeechhhhHH
Q 007575 365 PRGVLLVGLPGTGKTLLAKAVAGEA-EVPFISCSASEFVE 403 (597)
Q Consensus 365 p~gVLL~GPPGTGKT~LArAIA~el-~~pfi~is~sef~~ 403 (597)
|.-|+|.|+||+|||++|+.++.++ +.+++ +...+..
T Consensus 2 ~~~I~l~G~~GsGKST~a~~L~~~~~~~~~i--~~D~~r~ 39 (301)
T 1ltq_A 2 KKIILTIGCPGSGKSTWAREFIAKNPGFYNI--NRDDYRQ 39 (301)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHSTTEEEE--CHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhCCCcEEe--cccHHHH
Confidence 3468999999999999999999974 65555 4344443
No 222
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=96.21 E-value=0.011 Score=58.50 Aligned_cols=27 Identities=33% Similarity=0.337 Sum_probs=22.8
Q ss_pred CCCCceEEeCCCCChHHHHHHHHHHhc
Q 007575 363 RPPRGVLLVGLPGTGKTLLAKAVAGEA 389 (597)
Q Consensus 363 ~~p~gVLL~GPPGTGKT~LArAIA~el 389 (597)
.+..-+.|.||+|+|||+|++.+++..
T Consensus 29 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 55 (237)
T 2cbz_A 29 PEGALVAVVGQVGCGKSSLLSALLAEM 55 (237)
T ss_dssp CTTCEEEEECSTTSSHHHHHHHHTTCS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 344568899999999999999999854
No 223
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=96.21 E-value=0.0047 Score=59.88 Aligned_cols=26 Identities=19% Similarity=0.502 Sum_probs=22.7
Q ss_pred CCCceEEeCCCCChHHHHHHHHHHhc
Q 007575 364 PPRGVLLVGLPGTGKTLLAKAVAGEA 389 (597)
Q Consensus 364 ~p~gVLL~GPPGTGKT~LArAIA~el 389 (597)
.++-+.|+||+|+|||+|++++++..
T Consensus 18 ~g~~ivl~GPSGaGKsTL~~~L~~~~ 43 (197)
T 3ney_A 18 GRKTLVLIGASGVGRSHIKNALLSQN 43 (197)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHHHC
T ss_pred CCCEEEEECcCCCCHHHHHHHHHhhC
Confidence 45568899999999999999999865
No 224
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=96.20 E-value=0.003 Score=62.16 Aligned_cols=31 Identities=23% Similarity=0.435 Sum_probs=27.4
Q ss_pred CCceEEeCCCCChHHHHHHHHHHhcCCCeee
Q 007575 365 PRGVLLVGLPGTGKTLLAKAVAGEAEVPFIS 395 (597)
Q Consensus 365 p~gVLL~GPPGTGKT~LArAIA~el~~pfi~ 395 (597)
|.-+.|.||||+|||++++.++.++|...+.
T Consensus 27 ~~~i~l~G~~GsGKSTl~k~La~~lg~~~~~ 57 (246)
T 2bbw_A 27 LLRAVILGPPGSGKGTVCQRIAQNFGLQHLS 57 (246)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHCCCCEE
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHhCCeEec
Confidence 5679999999999999999999998876654
No 225
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=96.19 E-value=0.016 Score=59.25 Aligned_cols=67 Identities=15% Similarity=0.238 Sum_probs=41.5
Q ss_pred CCCceEEeCCCCChHHHHHHHHHHhc----CCCeeeechhhh-------HHHH---hh------cchHHHHHHHHHHHhc
Q 007575 364 PPRGVLLVGLPGTGKTLLAKAVAGEA----EVPFISCSASEF-------VELY---VG------MGASRVRDLFARAKKE 423 (597)
Q Consensus 364 ~p~gVLL~GPPGTGKT~LArAIA~el----~~pfi~is~sef-------~~~~---vG------~~e~~vr~lF~~A~~~ 423 (597)
.+..++|+||+|+|||+++..+|..+ |..+..++++.+ ...+ .| .....++..+..+ .
T Consensus 104 ~g~vi~lvG~~GsGKTTl~~~LA~~l~~~~G~~V~lv~~D~~r~~a~eqL~~~~~~~gl~~~~~~~~~~l~~al~~~--~ 181 (296)
T 2px0_A 104 HSKYIVLFGSTGAGKTTTLAKLAAISMLEKHKKIAFITTDTYRIAAVEQLKTYAELLQAPLEVCYTKEEFQQAKELF--S 181 (296)
T ss_dssp CSSEEEEEESTTSSHHHHHHHHHHHHHHTTCCCEEEEECCCSSTTHHHHHHHHHTTTTCCCCBCSSHHHHHHHHHHG--G
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCEEEEEecCcccchHHHHHHHHHHhcCCCeEecCCHHHHHHHHHHh--c
Confidence 46678999999999999999998754 545554443321 1111 01 1223344455443 5
Q ss_pred CCeEEEEcC
Q 007575 424 APSIIFIDE 432 (597)
Q Consensus 424 aP~ILfIDE 432 (597)
.+.+|+||-
T Consensus 182 ~~dlvIiDT 190 (296)
T 2px0_A 182 EYDHVFVDT 190 (296)
T ss_dssp GSSEEEEEC
T ss_pred CCCEEEEeC
Confidence 578999994
No 226
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=96.18 E-value=0.0049 Score=58.77 Aligned_cols=29 Identities=28% Similarity=0.303 Sum_probs=25.3
Q ss_pred CCCCCceEEeCCCCChHHHHHHHHHHhcC
Q 007575 362 ARPPRGVLLVGLPGTGKTLLAKAVAGEAE 390 (597)
Q Consensus 362 ~~~p~gVLL~GPPGTGKT~LArAIA~el~ 390 (597)
...++-++|+||||+|||++++.++..++
T Consensus 9 ~~~~~~i~l~G~sGsGKsTl~~~L~~~~~ 37 (204)
T 2qor_A 9 MARIPPLVVCGPSGVGKGTLIKKVLSEFP 37 (204)
T ss_dssp CCCCCCEEEECCTTSCHHHHHHHHHHHCT
T ss_pred cccCCEEEEECCCCCCHHHHHHHHHHhCc
Confidence 44567799999999999999999999874
No 227
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=96.16 E-value=0.0052 Score=61.56 Aligned_cols=32 Identities=38% Similarity=0.662 Sum_probs=28.5
Q ss_pred CCceEEeCCCCChHHHHHHHHHHhcCCCeeee
Q 007575 365 PRGVLLVGLPGTGKTLLAKAVAGEAEVPFISC 396 (597)
Q Consensus 365 p~gVLL~GPPGTGKT~LArAIA~el~~pfi~i 396 (597)
...|.|.|++|+|||++++.+|+.++.+|+..
T Consensus 48 g~~i~l~G~~GsGKSTl~~~La~~lg~~~~d~ 79 (250)
T 3nwj_A 48 GRSMYLVGMMGSGKTTVGKIMARSLGYTFFDC 79 (250)
T ss_dssp TCCEEEECSTTSCHHHHHHHHHHHHTCEEEEH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhcCCcEEeC
Confidence 34699999999999999999999999887754
No 228
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=96.16 E-value=0.003 Score=59.09 Aligned_cols=30 Identities=20% Similarity=0.244 Sum_probs=26.1
Q ss_pred eEEeCCCCChHHHHHHHHHHhc---CCCeeeec
Q 007575 368 VLLVGLPGTGKTLLAKAVAGEA---EVPFISCS 397 (597)
Q Consensus 368 VLL~GPPGTGKT~LArAIA~el---~~pfi~is 397 (597)
|.|.|++|+|||++++.++..+ |.+++...
T Consensus 3 I~l~G~~GsGKsT~~~~L~~~l~~~g~~v~~~~ 35 (197)
T 2z0h_A 3 ITFEGIDGSGKSTQIQLLAQYLEKRGKKVILKR 35 (197)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHHHCCC-EEEEE
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCeEEEee
Confidence 7899999999999999999988 98887653
No 229
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=96.13 E-value=0.0018 Score=61.58 Aligned_cols=29 Identities=14% Similarity=0.185 Sum_probs=24.7
Q ss_pred CCCceEEeCCCCChHHHHHHHHHHhcCCC
Q 007575 364 PPRGVLLVGLPGTGKTLLAKAVAGEAEVP 392 (597)
Q Consensus 364 ~p~gVLL~GPPGTGKT~LArAIA~el~~p 392 (597)
.+.-|+|.|+||+|||++++.++.+++.+
T Consensus 8 ~~~~I~l~G~~GsGKsT~~~~L~~~l~~~ 36 (215)
T 1nn5_A 8 RGALIVLEGVDRAGKSTQSRKLVEALCAA 36 (215)
T ss_dssp CCCEEEEEESTTSSHHHHHHHHHHHHHHT
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHc
Confidence 35679999999999999999999986543
No 230
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=96.11 E-value=0.0052 Score=59.02 Aligned_cols=27 Identities=30% Similarity=0.358 Sum_probs=23.3
Q ss_pred CCCceEEeCCCCChHHHHHHHHHHhcC
Q 007575 364 PPRGVLLVGLPGTGKTLLAKAVAGEAE 390 (597)
Q Consensus 364 ~p~gVLL~GPPGTGKT~LArAIA~el~ 390 (597)
.+.-+.|.||+|+|||++++.+++.+.
T Consensus 7 ~g~~i~l~GpsGsGKsTl~~~L~~~~~ 33 (208)
T 3tau_A 7 RGLLIVLSGPSGVGKGTVREAVFKDPE 33 (208)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHSTT
T ss_pred CCcEEEEECcCCCCHHHHHHHHHhhCC
Confidence 345688999999999999999998764
No 231
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=96.08 E-value=0.007 Score=64.84 Aligned_cols=34 Identities=26% Similarity=0.398 Sum_probs=28.6
Q ss_pred CCCCceEEeCCCCChHHHHHHHHHHhcCCCeeee
Q 007575 363 RPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISC 396 (597)
Q Consensus 363 ~~p~gVLL~GPPGTGKT~LArAIA~el~~pfi~i 396 (597)
..|.-|+|+|+||+|||++|+.++.+++.+++..
T Consensus 256 ~~~~lIil~G~pGSGKSTla~~L~~~~~~~~i~~ 289 (416)
T 3zvl_A 256 PNPEVVVAVGFPGAGKSTFIQEHLVSAGYVHVNR 289 (416)
T ss_dssp SSCCEEEEESCTTSSHHHHHHHHTGGGTCEECCG
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHhcCcEEEcc
Confidence 3466789999999999999999999988766543
No 232
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=96.06 E-value=0.025 Score=62.28 Aligned_cols=97 Identities=24% Similarity=0.206 Sum_probs=58.2
Q ss_pred CCCCCCceEEeCCCCChHHHHHHHHHHhc---CCCeeeechhh----hHHHH--hh----------------------cc
Q 007575 361 GARPPRGVLLVGLPGTGKTLLAKAVAGEA---EVPFISCSASE----FVELY--VG----------------------MG 409 (597)
Q Consensus 361 g~~~p~gVLL~GPPGTGKT~LArAIA~el---~~pfi~is~se----f~~~~--vG----------------------~~ 409 (597)
+..+..-++|.||||+|||+|++.+++.. |-+.+++...+ +.... .| .+
T Consensus 277 ~i~~G~i~~i~G~~GsGKSTLl~~l~g~~~~~G~~vi~~~~ee~~~~l~~~~~~~g~~~~~~~~~g~~~~~~~~p~~LS~ 356 (525)
T 1tf7_A 277 GFFKDSIILATGATGTGKTLLVSRFVENACANKERAILFAYEESRAQLLRNAYSWGMDFEEMERQNLLKIVCAYPESAGL 356 (525)
T ss_dssp SEESSCEEEEEECTTSSHHHHHHHHHHHHHTTTCCEEEEESSSCHHHHHHHHHTTSCCHHHHHHTTSEEECCCCGGGSCH
T ss_pred CCCCCcEEEEEeCCCCCHHHHHHHHHHHHHhCCCCEEEEEEeCCHHHHHHHHHHcCCCHHHHHhCCCEEEEEeccccCCH
Confidence 44555678999999999999999998754 34444443221 11100 00 12
Q ss_pred hHHHHHHHHHHHhcCCeEEEEcCcchhhhhcCCcccccchhHHHHHHHHHHHHhc
Q 007575 410 ASRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMD 464 (597)
Q Consensus 410 e~~vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~eqtLnqLL~emd 464 (597)
....+.++..+....|.+|+||=+..|.... ......+.+..++..+.
T Consensus 357 g~~q~~~~a~~l~~~p~llilDp~~~Ld~~~-------~~~~~~~~i~~ll~~l~ 404 (525)
T 1tf7_A 357 EDHLQIIKSEINDFKPARIAIDSLSALARGV-------SNNAFRQFVIGVTGYAK 404 (525)
T ss_dssp HHHHHHHHHHHHTTCCSEEEEECHHHHTSSS-------CHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhCCCEEEEcChHHHHhhC-------ChHHHHHHHHHHHHHHH
Confidence 3455667777778889999999655553321 11224445556666654
No 233
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=96.02 E-value=0.0035 Score=62.34 Aligned_cols=31 Identities=23% Similarity=0.365 Sum_probs=27.4
Q ss_pred CCceEEeCCCCChHHHHHHHHHHhcCCCeee
Q 007575 365 PRGVLLVGLPGTGKTLLAKAVAGEAEVPFIS 395 (597)
Q Consensus 365 p~gVLL~GPPGTGKT~LArAIA~el~~pfi~ 395 (597)
|..+.|.||||+|||++++.+++.++.+++.
T Consensus 9 ~~~i~i~G~~GsGKsTla~~la~~lg~~~~d 39 (233)
T 3r20_A 9 SLVVAVDGPAGTGKSSVSRGLARALGARYLD 39 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHTCEEEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCCccc
Confidence 4568999999999999999999999977654
No 234
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=96.02 E-value=0.024 Score=61.35 Aligned_cols=38 Identities=26% Similarity=0.198 Sum_probs=29.4
Q ss_pred CCCCCCceEEeCCCCChHHHHHHHHHHhc---CCCeeeech
Q 007575 361 GARPPRGVLLVGLPGTGKTLLAKAVAGEA---EVPFISCSA 398 (597)
Q Consensus 361 g~~~p~gVLL~GPPGTGKT~LArAIA~el---~~pfi~is~ 398 (597)
|..+..-++|.|+||+|||++|-.+|..+ |.+++.++.
T Consensus 193 Gl~~G~liiIaG~pG~GKTtlal~ia~~~a~~g~~vl~fSl 233 (444)
T 3bgw_A 193 GYKRRNFVLIAARPSMGKTAFALKQAKNMSDNDDVVNLHSL 233 (444)
T ss_dssp SBCSSCEEEEEECSSSSHHHHHHHHHHHHHHTTCEEEEECS
T ss_pred CCCCCcEEEEEeCCCCChHHHHHHHHHHHHHcCCEEEEEEC
Confidence 55666679999999999999999987654 556665543
No 235
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=96.00 E-value=0.0033 Score=59.33 Aligned_cols=28 Identities=21% Similarity=0.251 Sum_probs=24.4
Q ss_pred CCceEEeCCCCChHHHHHHHHHHhcCCC
Q 007575 365 PRGVLLVGLPGTGKTLLAKAVAGEAEVP 392 (597)
Q Consensus 365 p~gVLL~GPPGTGKT~LArAIA~el~~p 392 (597)
+.-|+|.|+||+|||++++.++..++..
T Consensus 4 ~~~I~i~G~~GsGKsT~~~~L~~~l~~~ 31 (213)
T 2plr_A 4 GVLIAFEGIDGSGKSSQATLLKDWIELK 31 (213)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHTTT
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHhhc
Confidence 3458899999999999999999988763
No 236
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=96.00 E-value=0.0029 Score=66.33 Aligned_cols=35 Identities=26% Similarity=0.390 Sum_probs=30.0
Q ss_pred CCceEEeCCCCChHHHHHHHHHHhcCCCeeeechh
Q 007575 365 PRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSAS 399 (597)
Q Consensus 365 p~gVLL~GPPGTGKT~LArAIA~el~~pfi~is~s 399 (597)
++-|+|.||+|+|||+|+..+|.+++.++++.+.-
T Consensus 40 ~~lIvI~GPTgsGKTtLa~~LA~~l~~eiIs~Ds~ 74 (339)
T 3a8t_A 40 EKLLVLMGATGTGKSRLSIDLAAHFPLEVINSDKM 74 (339)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHTTSCEEEEECCSS
T ss_pred CceEEEECCCCCCHHHHHHHHHHHCCCcEEccccc
Confidence 34689999999999999999999999888776543
No 237
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=95.94 E-value=0.004 Score=59.66 Aligned_cols=32 Identities=28% Similarity=0.426 Sum_probs=28.1
Q ss_pred CCceEEeCCCCChHHHHHHHHHHhcCCCeeee
Q 007575 365 PRGVLLVGLPGTGKTLLAKAVAGEAEVPFISC 396 (597)
Q Consensus 365 p~gVLL~GPPGTGKT~LArAIA~el~~pfi~i 396 (597)
|..+.|.|++|+|||++++.++..+|.+++..
T Consensus 3 ~~~i~i~G~~gsGkst~~~~l~~~~g~~~~~~ 34 (219)
T 2h92_A 3 AINIALDGPAAAGKSTIAKRVASELSMIYVDT 34 (219)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHTTCEEEEH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhcCCceecC
Confidence 34689999999999999999999999887654
No 238
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=95.93 E-value=0.0047 Score=59.18 Aligned_cols=27 Identities=33% Similarity=0.505 Sum_probs=23.4
Q ss_pred CCCceEEeCCCCChHHHHHHHHHHhcC
Q 007575 364 PPRGVLLVGLPGTGKTLLAKAVAGEAE 390 (597)
Q Consensus 364 ~p~gVLL~GPPGTGKT~LArAIA~el~ 390 (597)
.+.-+.|.||+|+|||||++.+++.+.
T Consensus 21 ~g~~v~I~G~sGsGKSTl~~~l~~~~~ 47 (208)
T 3c8u_A 21 GRQLVALSGAPGSGKSTLSNPLAAALS 47 (208)
T ss_dssp SCEEEEEECCTTSCTHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHh
Confidence 445678999999999999999999864
No 239
>1w4r_A Thymidine kinase; type II, human, cytosolic, phosphorylation, transferase; HET: TTP; 1.83A {Homo sapiens} PDB: 1xbt_A* 2wvj_A* 2j87_A*
Probab=95.93 E-value=0.011 Score=57.33 Aligned_cols=69 Identities=22% Similarity=0.142 Sum_probs=41.6
Q ss_pred CCceEEeCCCCChHH-HHHHHHHHh--cCCCeeeechh-------hhHHHHhhc-----chHHHHHHHHHHHhcCCeEEE
Q 007575 365 PRGVLLVGLPGTGKT-LLAKAVAGE--AEVPFISCSAS-------EFVELYVGM-----GASRVRDLFARAKKEAPSIIF 429 (597)
Q Consensus 365 p~gVLL~GPPGTGKT-~LArAIA~e--l~~pfi~is~s-------ef~~~~vG~-----~e~~vr~lF~~A~~~aP~ILf 429 (597)
.+-.++|||.|+||| .|.+++.+. .+..++.++.. ++.+.. |. ......++++..+ ...+|+
T Consensus 20 g~l~fiyG~MgsGKTt~Ll~~i~n~~~~~~kvl~~kp~~D~R~~~~i~S~~-g~~~~A~~~~~~~d~~~~~~--~~DvIl 96 (195)
T 1w4r_A 20 GQIQVILGPMFSGKSTELMRRVRRFQIAQYKCLVIKYAKDTRYSSSFCTHD-RNTMEALPACLLRDVAQEAL--GVAVIG 96 (195)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEEETTCCCGGGSCCHHH-HHHSEEEEESSGGGGHHHHH--TCSEEE
T ss_pred eEEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEccccCccchhhhhhcc-CCcccceecCCHHHHHHhcc--CCCEEE
Confidence 345789999999999 899998663 46666666532 111111 10 0111223343332 246999
Q ss_pred EcCcchh
Q 007575 430 IDEIDAV 436 (597)
Q Consensus 430 IDEIDaL 436 (597)
|||++-+
T Consensus 97 IDEaQFf 103 (195)
T 1w4r_A 97 IDEGQFF 103 (195)
T ss_dssp ESSGGGC
T ss_pred EEchhhh
Confidence 9999887
No 240
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=95.91 E-value=0.0033 Score=59.85 Aligned_cols=33 Identities=27% Similarity=0.294 Sum_probs=26.8
Q ss_pred CCceEEeCCCCChHHHHHHHHHHhc-CCCeeeec
Q 007575 365 PRGVLLVGLPGTGKTLLAKAVAGEA-EVPFISCS 397 (597)
Q Consensus 365 p~gVLL~GPPGTGKT~LArAIA~el-~~pfi~is 397 (597)
+.-+.|.|++|+|||++++.+++.+ +++++..+
T Consensus 21 ~~~i~i~G~~GsGKSTl~~~L~~~~~~~~~i~~D 54 (207)
T 2qt1_A 21 TFIIGISGVTNSGKTTLAKNLQKHLPNCSVISQD 54 (207)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHTTSTTEEEEEGG
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhcCCcEEEeCC
Confidence 4457899999999999999999987 66655443
No 241
>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D*
Probab=95.89 E-value=0.021 Score=64.20 Aligned_cols=23 Identities=35% Similarity=0.462 Sum_probs=19.2
Q ss_pred CceEEeCCCCChHHHHHHHHHHh
Q 007575 366 RGVLLVGLPGTGKTLLAKAVAGE 388 (597)
Q Consensus 366 ~gVLL~GPPGTGKT~LArAIA~e 388 (597)
+.+++.||||||||+++.++...
T Consensus 165 ~~~vi~G~pGTGKTt~l~~ll~~ 187 (608)
T 1w36_D 165 RISVISGGPGTGKTTTVAKLLAA 187 (608)
T ss_dssp SEEEEECCTTSTHHHHHHHHHHH
T ss_pred CCEEEEeCCCCCHHHHHHHHHHH
Confidence 35899999999999988877543
No 242
>2axn_A 6-phosphofructo-2-kinase/fructose-2,6- biphosphatase 3 (6PF-2-K/FRU- 2,6-P2ASE brain/placenta-type...; bifunctional enzyme, EDTA complex; HET: F6P EDT ADP; 2.10A {Homo sapiens} PDB: 2dwo_A* 2dwp_A* 2i1v_B* 3qpu_A* 3qpv_A* 3qpw_A*
Probab=95.89 E-value=0.015 Score=64.20 Aligned_cols=40 Identities=30% Similarity=0.515 Sum_probs=30.6
Q ss_pred CCceEEeCCCCChHHHHHHHHHHhcC---CCeeeechhhhHHH
Q 007575 365 PRGVLLVGLPGTGKTLLAKAVAGEAE---VPFISCSASEFVEL 404 (597)
Q Consensus 365 p~gVLL~GPPGTGKT~LArAIA~el~---~pfi~is~sef~~~ 404 (597)
+.-|+|+|.||+|||++|+.++..++ .+...++.+++...
T Consensus 35 ~~lIvlvGlpGSGKSTia~~La~~L~~~~~d~~v~s~D~~r~~ 77 (520)
T 2axn_A 35 PTVIVMVGLPARGKTYISKKLTRYLNWIGVPTKVFNVGEYRRE 77 (520)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHhhcCCCeEEecccHHHHH
Confidence 45689999999999999999999874 44445566655444
No 243
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=95.88 E-value=0.0061 Score=57.00 Aligned_cols=38 Identities=29% Similarity=0.248 Sum_probs=28.8
Q ss_pred CCCceEEeCCCCChHHHHHHHHHHhc---CCCeeeechhhh
Q 007575 364 PPRGVLLVGLPGTGKTLLAKAVAGEA---EVPFISCSASEF 401 (597)
Q Consensus 364 ~p~gVLL~GPPGTGKT~LArAIA~el---~~pfi~is~sef 401 (597)
.+..++|.|+||+|||++++.++..+ +.++..++...+
T Consensus 12 ~~~~i~l~G~~GsGKsT~~~~L~~~l~~~~~~~~~~~~d~~ 52 (186)
T 2yvu_A 12 KGIVVWLTGLPGSGKTTIATRLADLLQKEGYRVEVLDGDWA 52 (186)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEeeHHHH
Confidence 45568899999999999999999876 344555554433
No 244
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19
Probab=95.86 E-value=0.034 Score=56.34 Aligned_cols=58 Identities=12% Similarity=0.079 Sum_probs=33.4
Q ss_pred CcccccccCChHHHHHHHHHHHHhcChhHHhhcCC----CCCCceEEeCCCCChHHHHHHHHHH
Q 007575 328 TITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGA----RPPRGVLLVGLPGTGKTLLAKAVAG 387 (597)
Q Consensus 328 ~vtf~dV~G~de~k~~L~eiv~~l~~p~~~~~lg~----~~p~gVLL~GPPGTGKT~LArAIA~ 387 (597)
..+|+++.-.++..+.|.+.- +..+..++.... ...+.+++.+|+|+|||+.+-..+-
T Consensus 5 ~~~f~~~~l~~~~~~~l~~~g--~~~~~~~Q~~~i~~~~~~~~~~l~~~~TGsGKT~~~~~~~~ 66 (367)
T 1hv8_A 5 YMNFNELNLSDNILNAIRNKG--FEKPTDIQMKVIPLFLNDEYNIVAQARTGSGKTASFAIPLI 66 (367)
T ss_dssp CCCGGGSSCCHHHHHHHHHHT--CCSCCHHHHHHHHHHHHTCSEEEEECCSSSSHHHHHHHHHH
T ss_pred cCchhhcCCCHHHHHHHHHcC--CCCCCHHHHHHHHHHhCCCCCEEEECCCCChHHHHHHHHHH
Confidence 356777766666655555421 222222222111 1235799999999999987665443
No 245
>1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A
Probab=95.86 E-value=0.052 Score=51.76 Aligned_cols=52 Identities=19% Similarity=0.135 Sum_probs=31.7
Q ss_pred CcccccccCChHHHHHHHHHHHHhcChhHHhhcC---CCCCCceEEeCCCCChHHHH
Q 007575 328 TITFADVAGVDEAKEELEEIVEFLRSPDKYIRLG---ARPPRGVLLVGLPGTGKTLL 381 (597)
Q Consensus 328 ~vtf~dV~G~de~k~~L~eiv~~l~~p~~~~~lg---~~~p~gVLL~GPPGTGKT~L 381 (597)
..+|+++.-.++..+.|.+.- +..+..++... ....+.+++.+|+|+|||..
T Consensus 13 ~~~f~~l~l~~~l~~~l~~~g--~~~~~~~Q~~~i~~~~~~~~~lv~~pTGsGKT~~ 67 (224)
T 1qde_A 13 VYKFDDMELDENLLRGVFGYG--FEEPSAIQQRAIMPIIEGHDVLAQAQSGTGKTGT 67 (224)
T ss_dssp CCCGGGGTCCHHHHHHHHHHT--CCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHH
T ss_pred cCChhhcCCCHHHHHHHHHCC--CCCCcHHHHHHHHHHhcCCCEEEECCCCCcHHHH
Confidence 457888876666666665431 22333332211 11235799999999999976
No 246
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=95.85 E-value=0.0082 Score=59.60 Aligned_cols=29 Identities=34% Similarity=0.588 Sum_probs=26.1
Q ss_pred eEEeCCCCChHHHHHHHHHHhcCCCeeee
Q 007575 368 VLLVGLPGTGKTLLAKAVAGEAEVPFISC 396 (597)
Q Consensus 368 VLL~GPPGTGKT~LArAIA~el~~pfi~i 396 (597)
+-|.||||+|||++|+.++..++.++++.
T Consensus 11 ~~~~G~pGsGKsT~a~~L~~~~g~~~is~ 39 (230)
T 3gmt_A 11 LILLGAPGAGKGTQANFIKEKFGIPQIST 39 (230)
T ss_dssp EEEECCTTSCHHHHHHHHHHHHTCCEECH
T ss_pred eeeECCCCCCHHHHHHHHHHHhCCCeeec
Confidence 56899999999999999999999887754
No 247
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=95.85 E-value=0.0048 Score=59.18 Aligned_cols=38 Identities=21% Similarity=0.270 Sum_probs=30.4
Q ss_pred CCCceEEeCCCCChHHHHHHHHHHhc----CCCeeeechhhh
Q 007575 364 PPRGVLLVGLPGTGKTLLAKAVAGEA----EVPFISCSASEF 401 (597)
Q Consensus 364 ~p~gVLL~GPPGTGKT~LArAIA~el----~~pfi~is~sef 401 (597)
.+.-++|.|+||+|||++++.+++.+ |.+++.+++..+
T Consensus 24 ~~~~i~~~G~~GsGKsT~~~~l~~~l~~~~g~~~~~~~~d~~ 65 (211)
T 1m7g_A 24 RGLTIWLTGLSASGKSTLAVELEHQLVRDRRVHAYRLDGDNI 65 (211)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHHHHHHHHCCCEEEECHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHhccccCCcEEEECChHH
Confidence 34568899999999999999999865 466777776544
No 248
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=95.85 E-value=0.035 Score=60.60 Aligned_cols=38 Identities=13% Similarity=0.009 Sum_probs=29.5
Q ss_pred CCCCCCceEEeCCCCChHHHHHHHHHHhc----CCCeeeech
Q 007575 361 GARPPRGVLLVGLPGTGKTLLAKAVAGEA----EVPFISCSA 398 (597)
Q Consensus 361 g~~~p~gVLL~GPPGTGKT~LArAIA~el----~~pfi~is~ 398 (597)
|..+..-++|.|+||+|||+||..+|..+ +.+++.++.
T Consensus 238 Gl~~G~l~li~G~pG~GKT~lal~~a~~~a~~~g~~vl~~s~ 279 (503)
T 1q57_A 238 GARGGEVIMVTSGSGMVMSTFVRQQALQWGTAMGKKVGLAML 279 (503)
T ss_dssp CCCTTCEEEEEESSCHHHHHHHHHHHHHHTTTSCCCEEEEES
T ss_pred ccCCCeEEEEeecCCCCchHHHHHHHHHHHHhcCCcEEEEec
Confidence 55666679999999999999999988654 556666554
No 249
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=95.81 E-value=0.0045 Score=59.43 Aligned_cols=31 Identities=32% Similarity=0.345 Sum_probs=26.3
Q ss_pred CCceEEeCCCCChHHHHHHHHHHhcCCCeeee
Q 007575 365 PRGVLLVGLPGTGKTLLAKAVAGEAEVPFISC 396 (597)
Q Consensus 365 p~gVLL~GPPGTGKT~LArAIA~el~~pfi~i 396 (597)
+.-|.|.|++|+|||++++.++. +|.+++..
T Consensus 4 ~~~I~i~G~~GSGKST~~~~L~~-lg~~~id~ 34 (218)
T 1vht_A 4 RYIVALTGGIGSGKSTVANAFAD-LGINVIDA 34 (218)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH-TTCEEEEH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH-cCCEEEEc
Confidence 44688999999999999999998 78776653
No 250
>1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19
Probab=95.78 E-value=0.061 Score=51.19 Aligned_cols=58 Identities=17% Similarity=0.052 Sum_probs=34.2
Q ss_pred CcccccccCChHHHHHHHHHHHHhcChhHHhhcCC---CCCCceEEeCCCCChHHHHHHHHHH
Q 007575 328 TITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGA---RPPRGVLLVGLPGTGKTLLAKAVAG 387 (597)
Q Consensus 328 ~vtf~dV~G~de~k~~L~eiv~~l~~p~~~~~lg~---~~p~gVLL~GPPGTGKT~LArAIA~ 387 (597)
..+|+++.-.++..+.|.+. .+..+..++.... ...+.+++.+|+|+|||..+-..+-
T Consensus 13 ~~~f~~~~l~~~l~~~l~~~--g~~~~~~~Q~~~i~~~~~~~~~li~~~TGsGKT~~~~~~~~ 73 (220)
T 1t6n_A 13 SSGFRDFLLKPELLRAIVDC--GFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATL 73 (220)
T ss_dssp -CCSTTSCCCHHHHHHHHHT--TCCCCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHH
T ss_pred CCCHhhcCCCHHHHHHHHHC--CCCCCCHHHHHHHHHHhCCCCEEEECCCCCchhhhhhHHHH
Confidence 35688887666666666542 1233333332111 1235699999999999987665543
No 251
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=95.77 E-value=0.0055 Score=57.44 Aligned_cols=27 Identities=15% Similarity=0.364 Sum_probs=23.1
Q ss_pred CCCceEEeCCCCChHHHHHHHHHHhcC
Q 007575 364 PPRGVLLVGLPGTGKTLLAKAVAGEAE 390 (597)
Q Consensus 364 ~p~gVLL~GPPGTGKT~LArAIA~el~ 390 (597)
..+-+.|.||+|+|||+|++.+++...
T Consensus 4 ~g~~i~i~GpsGsGKSTL~~~L~~~~~ 30 (180)
T 1kgd_A 4 MRKTLVLLGAHGVGRRHIKNTLITKHP 30 (180)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhCC
Confidence 345688999999999999999998753
No 252
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=95.77 E-value=0.052 Score=55.92 Aligned_cols=28 Identities=25% Similarity=0.361 Sum_probs=23.6
Q ss_pred CCCCCceEEeCCCCChHHHHHHHHHHhc
Q 007575 362 ARPPRGVLLVGLPGTGKTLLAKAVAGEA 389 (597)
Q Consensus 362 ~~~p~gVLL~GPPGTGKT~LArAIA~el 389 (597)
.++..-+.|+||+|+|||+|++.+++.+
T Consensus 77 i~~Ge~vaivG~sGsGKSTLl~ll~gl~ 104 (306)
T 3nh6_A 77 VMPGQTLALVGPSGAGKSTILRLLFRFY 104 (306)
T ss_dssp ECTTCEEEEESSSCHHHHHHHHHHTTSS
T ss_pred EcCCCEEEEECCCCchHHHHHHHHHcCC
Confidence 3455568999999999999999999854
No 253
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=95.74 E-value=0.0059 Score=59.67 Aligned_cols=33 Identities=18% Similarity=0.324 Sum_probs=28.8
Q ss_pred CCCCceEEeCCCCChHHHHHHHHHHhcCCCeee
Q 007575 363 RPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFIS 395 (597)
Q Consensus 363 ~~p~gVLL~GPPGTGKT~LArAIA~el~~pfi~ 395 (597)
..+..|.|.|++|+|||++++.+++.+|.+++.
T Consensus 14 ~~~~~i~i~G~~gsGKst~~~~l~~~lg~~~~d 46 (236)
T 1q3t_A 14 MKTIQIAIDGPASSGKSTVAKIIAKDFGFTYLD 46 (236)
T ss_dssp CCCCEEEEECSSCSSHHHHHHHHHHHHCCEEEE
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHcCCceec
Confidence 445568999999999999999999999988764
No 254
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=95.72 E-value=0.005 Score=63.93 Aligned_cols=34 Identities=32% Similarity=0.474 Sum_probs=29.1
Q ss_pred CCCceEEeCCCCChHHHHHHHHHHhcCCCeeeec
Q 007575 364 PPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCS 397 (597)
Q Consensus 364 ~p~gVLL~GPPGTGKT~LArAIA~el~~pfi~is 397 (597)
.|+-++|.||+|+|||+||..+|.+.+.++++++
T Consensus 9 ~~~~i~i~GptgsGKt~la~~La~~~~~~iis~D 42 (316)
T 3foz_A 9 LPKAIFLMGPTASGKTALAIELRKILPVELISVD 42 (316)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHHSCEEEEECC
T ss_pred CCcEEEEECCCccCHHHHHHHHHHhCCCcEEecc
Confidence 3556889999999999999999999887777654
No 255
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=95.72 E-value=0.025 Score=62.24 Aligned_cols=113 Identities=19% Similarity=0.187 Sum_probs=61.5
Q ss_pred CCCCCceEEeCCCCChHHHHHHH--HHHhc--CCCeeeechhhhHHH------Hhhc-----------------------
Q 007575 362 ARPPRGVLLVGLPGTGKTLLAKA--VAGEA--EVPFISCSASEFVEL------YVGM----------------------- 408 (597)
Q Consensus 362 ~~~p~gVLL~GPPGTGKT~LArA--IA~el--~~pfi~is~sef~~~------~vG~----------------------- 408 (597)
.+....++|.||+|+|||+|++. +++.. +-.-+.+++.+.... .+|.
T Consensus 36 i~~Ge~~~l~G~nGsGKSTL~~~~ll~Gl~~~~~g~i~v~g~~~~~~~~~~~~~~g~~~q~~~~~~~l~~~~~~~~~~~~ 115 (525)
T 1tf7_A 36 LPIGRSTLVSGTSGTGKTLFSIQFLYNGIIEFDEPGVFVTFEETPQDIIKNARSFGWDLAKLVDEGKLFILDASPDPEGQ 115 (525)
T ss_dssp EETTSEEEEEESTTSSHHHHHHHHHHHHHHHHCCCEEEEESSSCHHHHHHHHGGGTCCHHHHHHTTSEEEEECCCCSSCC
T ss_pred CCCCeEEEEEcCCCCCHHHHHHHHHHHHHHhCCCCEEEEEEeCCHHHHHHHHHHcCCChHHhhccCcEEEEecCcccchh
Confidence 34455699999999999999999 44532 333444433221000 0000
Q ss_pred -------chHHHHHHHHHHHhcCCeEEEEcCcchhhhhcCCcccccchhHHHHHHHHHHHHhcCCCCCCcEEEEEecCCC
Q 007575 409 -------GASRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATNRS 481 (597)
Q Consensus 409 -------~e~~vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~eqtLnqLL~emdg~~~~~~VIVIaaTNrp 481 (597)
................|.+|+|||+-++.... ..+....+.+..++..+.. .++.||.+|.+.
T Consensus 116 ~~l~~~~l~~~~~~~~~~LS~g~~~~lilDe~t~~~~~~------~lD~~~~~~l~~ll~~l~~----~g~tvl~itH~~ 185 (525)
T 1tf7_A 116 EVVGGFDLSALIERINYAIQKYRARRVSIDSVTSVFQQY------DASSVVRRELFRLVARLKQ----IGATTVMTTERI 185 (525)
T ss_dssp SCCSSHHHHHHHHHHHHHHHHHTCSEEEEECSTTTSTTT------CCHHHHHHHHHHHHHHHHH----HTCEEEEEEECS
T ss_pred hhhcccCHHHHHHHHHHHHHHcCCCEEEECCHHHHHHhc------CCHHHHHHHHHHHHHHHHH----CCCEEEEEecCC
Confidence 01122333444445678899999997764321 1222334455566666542 234566667666
Q ss_pred CCC
Q 007575 482 DVL 484 (597)
Q Consensus 482 d~L 484 (597)
+.+
T Consensus 186 ~~~ 188 (525)
T 1tf7_A 186 EEY 188 (525)
T ss_dssp SSS
T ss_pred CCc
Confidence 543
No 256
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=95.67 E-value=0.0058 Score=57.58 Aligned_cols=26 Identities=23% Similarity=0.317 Sum_probs=23.1
Q ss_pred CCCceEEeCCCCChHHHHHHHHHHhc
Q 007575 364 PPRGVLLVGLPGTGKTLLAKAVAGEA 389 (597)
Q Consensus 364 ~p~gVLL~GPPGTGKT~LArAIA~el 389 (597)
.+.-+.|.||+|+|||++++.+++..
T Consensus 5 ~g~~i~l~G~~GsGKSTl~~~L~~~~ 30 (207)
T 2j41_A 5 KGLLIVLSGPSGVGKGTVRKRIFEDP 30 (207)
T ss_dssp CCCEEEEECSTTSCHHHHHHHHHHCT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHhh
Confidence 45568899999999999999999876
No 257
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=95.64 E-value=0.0071 Score=60.07 Aligned_cols=30 Identities=27% Similarity=0.346 Sum_probs=26.6
Q ss_pred CceEEeCCCCChHHHHHHHHHHhcCCCeee
Q 007575 366 RGVLLVGLPGTGKTLLAKAVAGEAEVPFIS 395 (597)
Q Consensus 366 ~gVLL~GPPGTGKT~LArAIA~el~~pfi~ 395 (597)
..|.|.||+|+|||++++.+|..+|.+++.
T Consensus 28 ~~I~I~G~~GsGKSTl~k~La~~Lg~~~~d 57 (252)
T 4e22_A 28 PVITVDGPSGAGKGTLCKALAESLNWRLLD 57 (252)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHTTCEEEE
T ss_pred cEEEEECCCCCCHHHHHHHHHHhcCCCcCC
Confidence 458899999999999999999999987663
No 258
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=95.56 E-value=0.005 Score=62.34 Aligned_cols=36 Identities=19% Similarity=0.280 Sum_probs=28.5
Q ss_pred CCceEEeCCCCChHHHHHHHHHHhcCCCeeeechhhhHH
Q 007575 365 PRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFVE 403 (597)
Q Consensus 365 p~gVLL~GPPGTGKT~LArAIA~el~~pfi~is~sef~~ 403 (597)
|.-|.|+|++|+|||++|+.++ ++|.+++ ++.++..
T Consensus 75 ~~iI~I~G~~GSGKSTva~~La-~lg~~~i--d~D~~~~ 110 (281)
T 2f6r_A 75 LYVLGLTGISGSGKSSVAQRLK-NLGAYII--DSDHLGH 110 (281)
T ss_dssp CEEEEEEECTTSCHHHHHHHHH-HHTCEEE--EHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHH-HCCCcEE--ehhHHHH
Confidence 4568999999999999999999 6787765 4455543
No 259
>3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens}
Probab=95.55 E-value=0.028 Score=54.00 Aligned_cols=56 Identities=20% Similarity=0.162 Sum_probs=31.3
Q ss_pred CCCcccccccCCh-HHHHHHHHHHHHhcChhHHhhcC---CCCCCceEEeCCCCChHHHHHH
Q 007575 326 GDTITFADVAGVD-EAKEELEEIVEFLRSPDKYIRLG---ARPPRGVLLVGLPGTGKTLLAK 383 (597)
Q Consensus 326 ~~~vtf~dV~G~d-e~k~~L~eiv~~l~~p~~~~~lg---~~~p~gVLL~GPPGTGKT~LAr 383 (597)
.|..+|++..+.. +..+.|.+. .+..+..++... ....+.+++.+|+|+|||..+-
T Consensus 16 ~p~~~f~~~~~l~~~l~~~l~~~--g~~~~~~~Q~~~i~~~~~~~~~l~~apTGsGKT~~~~ 75 (228)
T 3iuy_A 16 KPTCRFKDAFQQYPDLLKSIIRV--GILKPTPIQSQAWPIILQGIDLIVVAQTGTGKTLSYL 75 (228)
T ss_dssp CCCCSHHHHHTTCHHHHHHHHHH--TCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHH
T ss_pred CChhhHhhhhccCHHHHHHHHHC--CCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHH
Confidence 3456788854444 444444332 133333333221 1124679999999999997543
No 260
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=95.53 E-value=0.042 Score=53.51 Aligned_cols=21 Identities=29% Similarity=0.368 Sum_probs=17.4
Q ss_pred CceEEeCCCCChHHHHHHHHH
Q 007575 366 RGVLLVGLPGTGKTLLAKAVA 386 (597)
Q Consensus 366 ~gVLL~GPPGTGKT~LArAIA 386 (597)
..+++.||+|+|||++...+.
T Consensus 77 ~~~~i~g~TGsGKTt~~~~~~ 97 (235)
T 3llm_A 77 SVVIIRGATGCGKTTQVPQFI 97 (235)
T ss_dssp SEEEEECCTTSSHHHHHHHHH
T ss_pred CEEEEEeCCCCCcHHhHHHHH
Confidence 469999999999998766654
No 261
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=95.51 E-value=0.058 Score=53.86 Aligned_cols=26 Identities=23% Similarity=0.299 Sum_probs=22.1
Q ss_pred CCCceEEeCCCCChHHHHHHHHHHhc
Q 007575 364 PPRGVLLVGLPGTGKTLLAKAVAGEA 389 (597)
Q Consensus 364 ~p~gVLL~GPPGTGKT~LArAIA~el 389 (597)
...-+.|.||+|+|||+|.+.+++..
T Consensus 30 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 55 (253)
T 2nq2_C 30 KGDILAVLGQNGCGKSTLLDLLLGIH 55 (253)
T ss_dssp TTCEEEEECCSSSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 34458899999999999999999854
No 262
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=95.48 E-value=0.017 Score=55.05 Aligned_cols=36 Identities=19% Similarity=0.177 Sum_probs=27.9
Q ss_pred CCCceEEeCCCCChHHHHHHHHHHhc---CCCeeeechh
Q 007575 364 PPRGVLLVGLPGTGKTLLAKAVAGEA---EVPFISCSAS 399 (597)
Q Consensus 364 ~p~gVLL~GPPGTGKT~LArAIA~el---~~pfi~is~s 399 (597)
.+.-+.|.||+|+|||++++.+++.+ +.+++..+..
T Consensus 21 ~~~~i~i~G~~GsGKstl~~~l~~~~~~~~~~v~~~~~d 59 (201)
T 1rz3_A 21 GRLVLGIDGLSRSGKTTLANQLSQTLREQGISVCVFHMD 59 (201)
T ss_dssp SSEEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEEGG
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHhhcCCeEEEeccC
Confidence 34568899999999999999999865 5566555443
No 263
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=95.42 E-value=0.0057 Score=67.51 Aligned_cols=70 Identities=21% Similarity=0.312 Sum_probs=45.9
Q ss_pred CCceEEeCCCCChHHHHHHHHHHhcC--CCeeeechhh-hHH---HH--------hhcchHHHHHHHHHHHhcCCeEEEE
Q 007575 365 PRGVLLVGLPGTGKTLLAKAVAGEAE--VPFISCSASE-FVE---LY--------VGMGASRVRDLFARAKKEAPSIIFI 430 (597)
Q Consensus 365 p~gVLL~GPPGTGKT~LArAIA~el~--~pfi~is~se-f~~---~~--------vG~~e~~vr~lF~~A~~~aP~ILfI 430 (597)
+.+++|.||+|+|||++++++++... ...+.+.... +.- .. ++...-.+.+++..+....|.++++
T Consensus 260 g~~i~I~GptGSGKTTlL~aL~~~i~~~~giitied~~E~~~~~~~~v~~~~r~~~~~~~~~~~~~l~~~LR~~PD~iiv 339 (511)
T 2oap_1 260 KFSAIVVGETASGKTTTLNAIMMFIPPDAKVVSIEDTREIKLYHENWIAEVTRTGMGEGEIDMYDLLRAALRQRPDYIIV 339 (511)
T ss_dssp TCCEEEEESTTSSHHHHHHHHGGGSCTTCCEEEEESSCCCCCCCSSEEEEECBCCSSSCCBCHHHHHHTTGGGCCSEEEE
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhCCCCCCEEEEcCcccccCCCCCeEEEEeecccccCCcCHHHHHHHhhccCCCeEEe
Confidence 44699999999999999999999763 2233333221 100 00 0112224566677777789999999
Q ss_pred cCcc
Q 007575 431 DEID 434 (597)
Q Consensus 431 DEID 434 (597)
+|+-
T Consensus 340 gEir 343 (511)
T 2oap_1 340 GEVR 343 (511)
T ss_dssp SCCC
T ss_pred CCcC
Confidence 9973
No 264
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A*
Probab=95.41 E-value=0.022 Score=67.82 Aligned_cols=43 Identities=30% Similarity=0.370 Sum_probs=33.8
Q ss_pred cCChHHHHHHHHHHHHhcChhHHhhcCCCCCCceEEeCCCCChHHHHHHHHHHh
Q 007575 335 AGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGE 388 (597)
Q Consensus 335 ~G~de~k~~L~eiv~~l~~p~~~~~lg~~~p~gVLL~GPPGTGKT~LArAIA~e 388 (597)
+|.++..++|.+.+... ...+-|.|+||.|.|||+||+.++..
T Consensus 131 VGRe~eLeeL~elL~~~-----------d~~RVV~IvGmGGIGKTTLAk~Vy~d 173 (1221)
T 1vt4_I 131 VSRLQPYLKLRQALLEL-----------RPAKNVLIDGVLGSGKTWVALDVCLS 173 (1221)
T ss_dssp CCCHHHHHHHHHHHHHC-----------CSSCEEEECCSTTSSHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHhcc-----------CCCeEEEEEcCCCccHHHHHHHHHHh
Confidence 88998888887776521 12356889999999999999999863
No 265
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=95.35 E-value=0.013 Score=55.88 Aligned_cols=26 Identities=42% Similarity=0.592 Sum_probs=21.9
Q ss_pred CCCceEEeCCCCChHHHHHHHHHHhc
Q 007575 364 PPRGVLLVGLPGTGKTLLAKAVAGEA 389 (597)
Q Consensus 364 ~p~gVLL~GPPGTGKT~LArAIA~el 389 (597)
+++.+.|.||+|+|||+|++.+++..
T Consensus 3 ~g~~i~lvGpsGaGKSTLl~~L~~~~ 28 (198)
T 1lvg_A 3 GPRPVVLSGPSGAGKSTLLKKLFQEH 28 (198)
T ss_dssp --CCEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 34568999999999999999999865
No 266
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=95.31 E-value=0.0077 Score=63.20 Aligned_cols=32 Identities=31% Similarity=0.302 Sum_probs=27.4
Q ss_pred CceEEeCCCCChHHHHHHHHHHhcCCCeeeec
Q 007575 366 RGVLLVGLPGTGKTLLAKAVAGEAEVPFISCS 397 (597)
Q Consensus 366 ~gVLL~GPPGTGKT~LArAIA~el~~pfi~is 397 (597)
+-|+|.||+|+|||+||+.+|..++..+++.+
T Consensus 8 ~lI~I~GptgSGKTtla~~La~~l~~~iis~D 39 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAKKFNGEIISGD 39 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHTTEEEEECC
T ss_pred ceEEEECCCcCcHHHHHHHHHHHcCCceeccc
Confidence 46889999999999999999999987666544
No 267
>1q0u_A Bstdead; DEAD protein, RNA binding protein; 1.85A {Geobacillus stearothermophilus} SCOP: c.37.1.19
Probab=95.30 E-value=0.04 Score=52.60 Aligned_cols=18 Identities=28% Similarity=0.209 Sum_probs=15.4
Q ss_pred CceEEeCCCCChHHHHHH
Q 007575 366 RGVLLVGLPGTGKTLLAK 383 (597)
Q Consensus 366 ~gVLL~GPPGTGKT~LAr 383 (597)
+.+++.+|+|+|||..+-
T Consensus 42 ~~~lv~a~TGsGKT~~~~ 59 (219)
T 1q0u_A 42 ESMVGQSQTGTGKTHAYL 59 (219)
T ss_dssp CCEEEECCSSHHHHHHHH
T ss_pred CCEEEECCCCChHHHHHH
Confidence 579999999999998643
No 268
>1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19
Probab=95.30 E-value=0.047 Score=51.24 Aligned_cols=18 Identities=33% Similarity=0.311 Sum_probs=15.5
Q ss_pred CceEEeCCCCChHHHHHH
Q 007575 366 RGVLLVGLPGTGKTLLAK 383 (597)
Q Consensus 366 ~gVLL~GPPGTGKT~LAr 383 (597)
+.+++.+|+|+|||..+-
T Consensus 41 ~~~lv~apTGsGKT~~~~ 58 (206)
T 1vec_A 41 RDILARAKNGTGKSGAYL 58 (206)
T ss_dssp CCEEEECCSSSTTHHHHH
T ss_pred CCEEEECCCCCchHHHHH
Confidence 579999999999997554
No 269
>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B*
Probab=95.29 E-value=0.05 Score=64.05 Aligned_cols=25 Identities=28% Similarity=0.266 Sum_probs=21.3
Q ss_pred CCCCceEEeCCCCChHHHHHHHHHH
Q 007575 363 RPPRGVLLVGLPGTGKTLLAKAVAG 387 (597)
Q Consensus 363 ~~p~gVLL~GPPGTGKT~LArAIA~ 387 (597)
....-+.|.||.|+|||++.|.++.
T Consensus 671 ~~g~i~~ItGPNGaGKSTlLr~i~~ 695 (918)
T 3thx_B 671 DSERVMIITGPNMGGKSSYIKQVAL 695 (918)
T ss_dssp TSCCEEEEESCCCHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCchHHHHHHHHH
Confidence 3445689999999999999999874
No 270
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=95.27 E-value=0.026 Score=60.73 Aligned_cols=93 Identities=15% Similarity=0.261 Sum_probs=51.6
Q ss_pred CcccccccCChHHHHHHHHHHHHhcChhHHhhcCCCCCCceEEeCCCCChHHHHHHHHHHhcCC---Ceeeechh-hhHH
Q 007575 328 TITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEV---PFISCSAS-EFVE 403 (597)
Q Consensus 328 ~vtf~dV~G~de~k~~L~eiv~~l~~p~~~~~lg~~~p~gVLL~GPPGTGKT~LArAIA~el~~---pfi~is~s-ef~~ 403 (597)
..+++++.-..+.+..|+.++ .. +...++|.||+|+|||++++++++.... .++.+.-+ ++.-
T Consensus 143 ~~~l~~Lg~~~~~~~~L~~l~---~~----------~ggii~I~GpnGSGKTTlL~allg~l~~~~g~I~~~ed~ie~~~ 209 (418)
T 1p9r_A 143 RLDLHSLGMTAHNHDNFRRLI---KR----------PHGIILVTGPTGSGKSTTLYAGLQELNSSERNILTVEDPIEFDI 209 (418)
T ss_dssp CCCGGGSCCCHHHHHHHHHHH---TS----------SSEEEEEECSTTSCHHHHHHHHHHHHCCTTSCEEEEESSCCSCC
T ss_pred CCCHHHcCCCHHHHHHHHHHH---Hh----------cCCeEEEECCCCCCHHHHHHHHHhhcCCCCCEEEEecccchhcc
Confidence 356677654444444455442 11 1224789999999999999999997642 22222110 1000
Q ss_pred -----HHhh-cchHHHHHHHHHHHhcCCeEEEEcCc
Q 007575 404 -----LYVG-MGASRVRDLFARAKKEAPSIIFIDEI 433 (597)
Q Consensus 404 -----~~vG-~~e~~vr~lF~~A~~~aP~ILfIDEI 433 (597)
..+. ...-...+.+..+....|.++++.|+
T Consensus 210 ~~~~q~~v~~~~g~~f~~~lr~~Lrq~pd~i~vgEi 245 (418)
T 1p9r_A 210 DGIGQTQVNPRVDMTFARGLRAILRQDPDVVMVGEI 245 (418)
T ss_dssp SSSEEEECBGGGTBCHHHHHHHHGGGCCSEEEESCC
T ss_pred CCcceEEEccccCcCHHHHHHHHhccCCCeEEEcCc
Confidence 0000 00112334555566678999999985
No 271
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=95.27 E-value=0.0091 Score=62.09 Aligned_cols=32 Identities=28% Similarity=0.246 Sum_probs=26.8
Q ss_pred CceEEeCCCCChHHHHHHHHHHhcCCCeeeec
Q 007575 366 RGVLLVGLPGTGKTLLAKAVAGEAEVPFISCS 397 (597)
Q Consensus 366 ~gVLL~GPPGTGKT~LArAIA~el~~pfi~is 397 (597)
+-++|.||+|+|||+||..+|..++..+++.+
T Consensus 4 ~~i~i~GptgsGKt~la~~La~~~~~~iis~D 35 (322)
T 3exa_A 4 KLVAIVGPTAVGKTKTSVMLAKRLNGEVISGD 35 (322)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHTTTEEEEECC
T ss_pred cEEEEECCCcCCHHHHHHHHHHhCccceeecC
Confidence 35789999999999999999998876665554
No 272
>2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens}
Probab=95.22 E-value=0.045 Score=52.85 Aligned_cols=54 Identities=24% Similarity=0.211 Sum_probs=31.4
Q ss_pred CcccccccCChHHHHHHHHHHHHhcChhHHhhcC---CCCCCceEEeCCCCChHHHHHH
Q 007575 328 TITFADVAGVDEAKEELEEIVEFLRSPDKYIRLG---ARPPRGVLLVGLPGTGKTLLAK 383 (597)
Q Consensus 328 ~vtf~dV~G~de~k~~L~eiv~~l~~p~~~~~lg---~~~p~gVLL~GPPGTGKT~LAr 383 (597)
..+|+++.-.++..+.|.+. .+..+..++... ....+.+++.+|+|+|||+.+-
T Consensus 24 ~~~f~~~~l~~~l~~~l~~~--~~~~~~~~Q~~~i~~~~~~~~~li~a~TGsGKT~~~~ 80 (236)
T 2pl3_A 24 ITRFSDFPLSKKTLKGLQEA--QYRLVTEIQKQTIGLALQGKDVLGAAKTGSGKTLAFL 80 (236)
T ss_dssp CSBGGGSCCCHHHHHHHHHT--TCCBCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHH
T ss_pred cCCHhhcCCCHHHHHHHHHC--CCCCCCHHHHHHHHHHhCCCCEEEEeCCCCcHHHHHH
Confidence 35688877666666555442 122222222211 1123579999999999998543
No 273
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=95.19 E-value=0.0096 Score=57.24 Aligned_cols=70 Identities=16% Similarity=0.076 Sum_probs=40.2
Q ss_pred CceEEeCCCCChHHHHHHHHHHhc---CCCeeeechhhhH-------HHHhhcc-----hHHHHHHHHHHHhcCCeEEEE
Q 007575 366 RGVLLVGLPGTGKTLLAKAVAGEA---EVPFISCSASEFV-------ELYVGMG-----ASRVRDLFARAKKEAPSIIFI 430 (597)
Q Consensus 366 ~gVLL~GPPGTGKT~LArAIA~el---~~pfi~is~sef~-------~~~vG~~-----e~~vr~lF~~A~~~aP~ILfI 430 (597)
+-.+++||+|+|||+.+-.++.++ +..++.+....-. ....|.. .....++++.+.. ...+|+|
T Consensus 9 ~i~v~~G~mgsGKTT~ll~~a~r~~~~g~kV~v~k~~~d~r~~~~~i~s~~g~~~~a~~~~~~~~i~~~~~~-~~dvViI 87 (191)
T 1xx6_A 9 WVEVIVGPMYSGKSEELIRRIRRAKIAKQKIQVFKPEIDNRYSKEDVVSHMGEKEQAVAIKNSREILKYFEE-DTEVIAI 87 (191)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEEC-------CEEECTTSCEEECEEESSSTHHHHHCCT-TCSEEEE
T ss_pred EEEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEeccCccchHHHHHhhcCCceeeEeeCCHHHHHHHHhc-cCCEEEE
Confidence 457889999999998888887764 5555554311000 0011110 0111355554432 3569999
Q ss_pred cCcchh
Q 007575 431 DEIDAV 436 (597)
Q Consensus 431 DEIDaL 436 (597)
||++.+
T Consensus 88 DEaqfl 93 (191)
T 1xx6_A 88 DEVQFF 93 (191)
T ss_dssp CSGGGS
T ss_pred ECCCCC
Confidence 999875
No 274
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=95.17 E-value=0.012 Score=55.50 Aligned_cols=25 Identities=24% Similarity=0.344 Sum_probs=22.2
Q ss_pred CCceEEeCCCCChHHHHHHHHHHhc
Q 007575 365 PRGVLLVGLPGTGKTLLAKAVAGEA 389 (597)
Q Consensus 365 p~gVLL~GPPGTGKT~LArAIA~el 389 (597)
+.-+.|.||+|+|||+|++.+++..
T Consensus 7 g~ii~l~Gp~GsGKSTl~~~L~~~~ 31 (205)
T 3tr0_A 7 ANLFIISAPSGAGKTSLVRALVKAL 31 (205)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHS
T ss_pred CcEEEEECcCCCCHHHHHHHHHhhC
Confidence 4457899999999999999999985
No 275
>3fdi_A Uncharacterized protein; cytidylate kinase like protein, PSI, MCSG, PRK04182 class ME structural genomics, protein structure initiative; 2.20A {Eubacterium ventriosum}
Probab=95.17 E-value=0.011 Score=56.96 Aligned_cols=29 Identities=28% Similarity=0.350 Sum_probs=27.2
Q ss_pred ceEEeCCCCChHHHHHHHHHHhcCCCeee
Q 007575 367 GVLLVGLPGTGKTLLAKAVAGEAEVPFIS 395 (597)
Q Consensus 367 gVLL~GPPGTGKT~LArAIA~el~~pfi~ 395 (597)
-|.|.||+|+|||++++.+|..+|.+|+.
T Consensus 8 iI~i~g~~GsGk~ti~~~la~~lg~~~~D 36 (201)
T 3fdi_A 8 IIAIGREFGSGGHLVAKKLAEHYNIPLYS 36 (201)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHTTCCEEC
T ss_pred EEEEeCCCCCCHHHHHHHHHHHhCcCEEC
Confidence 58899999999999999999999999984
No 276
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=95.16 E-value=0.0093 Score=55.79 Aligned_cols=34 Identities=18% Similarity=0.215 Sum_probs=25.3
Q ss_pred ceEEeCCCCChHHHHHHHHHHhcCCCeeeechhhh
Q 007575 367 GVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEF 401 (597)
Q Consensus 367 gVLL~GPPGTGKT~LArAIA~el~~pfi~is~sef 401 (597)
-+.|.||+|+|||++++.+++..+. .+.+++.++
T Consensus 4 ii~l~G~~GaGKSTl~~~L~~~~~g-~~~i~~d~~ 37 (189)
T 2bdt_A 4 LYIITGPAGVGKSTTCKRLAAQLDN-SAYIEGDII 37 (189)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHSSS-EEEEEHHHH
T ss_pred EEEEECCCCCcHHHHHHHHhcccCC-eEEEcccch
Confidence 4789999999999999999985532 234454444
No 277
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=95.15 E-value=0.0078 Score=57.24 Aligned_cols=32 Identities=31% Similarity=0.394 Sum_probs=25.9
Q ss_pred CCCceEEeCCCCChHHHHHHHHHHhcC--CCeee
Q 007575 364 PPRGVLLVGLPGTGKTLLAKAVAGEAE--VPFIS 395 (597)
Q Consensus 364 ~p~gVLL~GPPGTGKT~LArAIA~el~--~pfi~ 395 (597)
.+.-+.|.||+|+|||+|++.+++.++ +.++.
T Consensus 5 ~~~~i~i~G~~GsGKSTl~~~l~~~~~~~i~~v~ 38 (211)
T 3asz_A 5 KPFVIGIAGGTASGKTTLAQALARTLGERVALLP 38 (211)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHHHHGGGEEEEE
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHHhCCCeEEEe
Confidence 344588999999999999999999877 54443
No 278
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=95.12 E-value=0.027 Score=65.17 Aligned_cols=23 Identities=26% Similarity=0.255 Sum_probs=19.3
Q ss_pred CceEEeCCCCChHHHHHHHHHHh
Q 007575 366 RGVLLVGLPGTGKTLLAKAVAGE 388 (597)
Q Consensus 366 ~gVLL~GPPGTGKT~LArAIA~e 388 (597)
..+++.||+|+|||+++..++.+
T Consensus 110 ~~vii~gpTGSGKTtllp~ll~~ 132 (773)
T 2xau_A 110 QIMVFVGETGSGKTTQIPQFVLF 132 (773)
T ss_dssp SEEEEECCTTSSHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 46999999999999987777554
No 279
>3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} PDB: 4a4d_A
Probab=95.12 E-value=0.043 Score=53.44 Aligned_cols=54 Identities=19% Similarity=0.182 Sum_probs=29.2
Q ss_pred CcccccccCChHHHHHHHHHHHHhcChhHHhhcC---CCCCCceEEeCCCCChHHHHHH
Q 007575 328 TITFADVAGVDEAKEELEEIVEFLRSPDKYIRLG---ARPPRGVLLVGLPGTGKTLLAK 383 (597)
Q Consensus 328 ~vtf~dV~G~de~k~~L~eiv~~l~~p~~~~~lg---~~~p~gVLL~GPPGTGKT~LAr 383 (597)
..+|+++.-.++..+.|.+. .+..+..++..- ....+.+++.+|+|+|||..+-
T Consensus 28 ~~~f~~~~l~~~l~~~l~~~--g~~~~~~~Q~~~i~~~~~g~~~l~~apTGsGKT~~~~ 84 (242)
T 3fe2_A 28 VLNFYEANFPANVMDVIARQ--NFTEPTAIQAQGWPVALSGLDMVGVAQTGSGKTLSYL 84 (242)
T ss_dssp CSSTTTTTCCHHHHHHHHTT--TCCSCCHHHHHHHHHHHHTCCEEEEECTTSCHHHHHH
T ss_pred cCCHhhcCCCHHHHHHHHHC--CCCCCCHHHHHHHHHHhCCCCEEEECCCcCHHHHHHH
Confidence 45676665555544444331 122222222211 1123579999999999997643
No 280
>4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A
Probab=95.12 E-value=0.081 Score=59.63 Aligned_cols=33 Identities=27% Similarity=0.506 Sum_probs=21.5
Q ss_pred ceEEeCCCCChHHHHH-HHHHHhc--CCCeeeechh
Q 007575 367 GVLLVGLPGTGKTLLA-KAVAGEA--EVPFISCSAS 399 (597)
Q Consensus 367 gVLL~GPPGTGKT~LA-rAIA~el--~~pfi~is~s 399 (597)
-.||.||||||||+++ ..|+..+ +..++.+..+
T Consensus 207 ~~lI~GPPGTGKT~ti~~~I~~l~~~~~~ILv~a~T 242 (646)
T 4b3f_X 207 LAIIHGPPGTGKTTTVVEIILQAVKQGLKVLCCAPS 242 (646)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEESS
T ss_pred ceEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEcCc
Confidence 3799999999999654 4444322 5566655543
No 281
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=95.11 E-value=0.0092 Score=58.21 Aligned_cols=32 Identities=28% Similarity=0.374 Sum_probs=27.2
Q ss_pred CCceEEeCCCCChHHHHHHHHHHhcCCCeeeec
Q 007575 365 PRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCS 397 (597)
Q Consensus 365 p~gVLL~GPPGTGKT~LArAIA~el~~pfi~is 397 (597)
.++++|.||+|+|||+||.+++.+.+ ++++.+
T Consensus 34 g~~ilI~GpsGsGKStLA~~La~~g~-~iIsdD 65 (205)
T 2qmh_A 34 GLGVLITGDSGVGKSETALELVQRGH-RLIADD 65 (205)
T ss_dssp TEEEEEECCCTTTTHHHHHHHHTTTC-EEEESS
T ss_pred CEEEEEECCCCCCHHHHHHHHHHhCC-eEEecc
Confidence 46799999999999999999999866 666554
No 282
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=95.08 E-value=0.041 Score=67.29 Aligned_cols=29 Identities=24% Similarity=0.328 Sum_probs=24.7
Q ss_pred CCCCCceEEeCCCCChHHHHHHHHHHhcC
Q 007575 362 ARPPRGVLLVGLPGTGKTLLAKAVAGEAE 390 (597)
Q Consensus 362 ~~~p~gVLL~GPPGTGKT~LArAIA~el~ 390 (597)
.++..-+.|+||+|+|||+|++.+.+++.
T Consensus 441 i~~G~~vaivG~sGsGKSTll~ll~~~~~ 469 (1321)
T 4f4c_A 441 VNAGQTVALVGSSGCGKSTIISLLLRYYD 469 (1321)
T ss_dssp ECTTCEEEEEECSSSCHHHHHHHHTTSSC
T ss_pred ecCCcEEEEEecCCCcHHHHHHHhccccc
Confidence 44556789999999999999999998763
No 283
>3bor_A Human initiation factor 4A-II; translation initiation, DEAD BOX, structural genomics, helic binding, HOST-virus interaction, hydrolase; 1.85A {Homo sapiens} PDB: 2g9n_A*
Probab=95.07 E-value=0.029 Score=54.58 Aligned_cols=55 Identities=16% Similarity=0.084 Sum_probs=32.5
Q ss_pred CCcccccccCChHHHHHHHHHHHHhcChhHHhhcC---CCCCCceEEeCCCCChHHHHHH
Q 007575 327 DTITFADVAGVDEAKEELEEIVEFLRSPDKYIRLG---ARPPRGVLLVGLPGTGKTLLAK 383 (597)
Q Consensus 327 ~~vtf~dV~G~de~k~~L~eiv~~l~~p~~~~~lg---~~~p~gVLL~GPPGTGKT~LAr 383 (597)
+..+|+++.-.++..+.|.+. .+..+..++... ....+.+++.+|+|+|||..+-
T Consensus 28 ~~~~f~~l~l~~~l~~~l~~~--g~~~~~~~Q~~ai~~i~~~~~~li~apTGsGKT~~~~ 85 (237)
T 3bor_A 28 IVDNFDDMNLKESLLRGIYAY--GFEKPSAIQQRAIIPCIKGYDVIAQAQSGTGKTATFA 85 (237)
T ss_dssp CCCSGGGSCCCHHHHHHHHHH--TCCSCCHHHHHHHHHHHTTCCEEECCCSSHHHHHHHH
T ss_pred ccCChhhcCCCHHHHHHHHHC--CCCCCCHHHHHHHHHHhCCCCEEEECCCCCcHHHHHH
Confidence 346798886566655555432 123333333221 1123579999999999997643
No 284
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=95.05 E-value=0.094 Score=58.39 Aligned_cols=28 Identities=29% Similarity=0.380 Sum_probs=23.5
Q ss_pred CCCCCceEEeCCCCChHHHHHHHHHHhc
Q 007575 362 ARPPRGVLLVGLPGTGKTLLAKAVAGEA 389 (597)
Q Consensus 362 ~~~p~gVLL~GPPGTGKT~LArAIA~el 389 (597)
.++...+.|.||+|+|||+|++.+++..
T Consensus 366 i~~G~~~~ivG~sGsGKSTLl~~l~g~~ 393 (582)
T 3b60_A 366 IPAGKTVALVGRSGSGKSTIASLITRFY 393 (582)
T ss_dssp ECTTCEEEEEECTTSSHHHHHHHHTTTT
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhhcc
Confidence 3445568999999999999999999854
No 285
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=95.01 E-value=0.082 Score=59.08 Aligned_cols=28 Identities=25% Similarity=0.402 Sum_probs=23.8
Q ss_pred CCCCCceEEeCCCCChHHHHHHHHHHhc
Q 007575 362 ARPPRGVLLVGLPGTGKTLLAKAVAGEA 389 (597)
Q Consensus 362 ~~~p~gVLL~GPPGTGKT~LArAIA~el 389 (597)
.++..-+-|+||+|+|||+|++.+++..
T Consensus 366 i~~Ge~~~ivG~sGsGKSTll~~l~g~~ 393 (587)
T 3qf4_A 366 VKPGSLVAVLGETGSGKSTLMNLIPRLI 393 (587)
T ss_dssp ECTTCEEEEECSSSSSHHHHHHTTTTSS
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCc
Confidence 3455668999999999999999999864
No 286
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=94.98 E-value=0.11 Score=57.71 Aligned_cols=28 Identities=29% Similarity=0.347 Sum_probs=23.4
Q ss_pred CCCCCceEEeCCCCChHHHHHHHHHHhc
Q 007575 362 ARPPRGVLLVGLPGTGKTLLAKAVAGEA 389 (597)
Q Consensus 362 ~~~p~gVLL~GPPGTGKT~LArAIA~el 389 (597)
.++..-+.|.||+|+|||+|++.+++..
T Consensus 366 i~~G~~~~ivG~sGsGKSTll~~l~g~~ 393 (582)
T 3b5x_A 366 IPQGKTVALVGRSGSGKSTIANLFTRFY 393 (582)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 3445568899999999999999999854
No 287
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=94.97 E-value=0.013 Score=55.05 Aligned_cols=25 Identities=36% Similarity=0.535 Sum_probs=21.9
Q ss_pred CceEEeCCCCChHHHHHHHHHHhcC
Q 007575 366 RGVLLVGLPGTGKTLLAKAVAGEAE 390 (597)
Q Consensus 366 ~gVLL~GPPGTGKT~LArAIA~el~ 390 (597)
+-+.|.||+|+|||+|++.+++...
T Consensus 2 ~ii~l~GpsGaGKsTl~~~L~~~~~ 26 (186)
T 3a00_A 2 RPIVISGPSGTGKSTLLKKLFAEYP 26 (186)
T ss_dssp CCEEEESSSSSSHHHHHHHHHHHCG
T ss_pred CEEEEECCCCCCHHHHHHHHHhhCC
Confidence 4578999999999999999998753
No 288
>2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A
Probab=94.80 E-value=0.11 Score=53.92 Aligned_cols=57 Identities=19% Similarity=0.132 Sum_probs=33.5
Q ss_pred CCcccccccCChHHHHHHHHHHHHhcChhHHhhcC---CCCCCceEEeCCCCChHHHHHHHH
Q 007575 327 DTITFADVAGVDEAKEELEEIVEFLRSPDKYIRLG---ARPPRGVLLVGLPGTGKTLLAKAV 385 (597)
Q Consensus 327 ~~vtf~dV~G~de~k~~L~eiv~~l~~p~~~~~lg---~~~p~gVLL~GPPGTGKT~LArAI 385 (597)
+..+|+++.-.++..+.|.+. -+..+..++... ....+.+++.+|+|+|||..+-..
T Consensus 35 ~~~~f~~~~l~~~l~~~l~~~--g~~~~~~~Q~~ai~~i~~~~~~lv~a~TGsGKT~~~~~~ 94 (410)
T 2j0s_A 35 VTPTFDTMGLREDLLRGIYAY--GFEKPSAIQQRAIKQIIKGRDVIAQSQSGTGKTATFSIS 94 (410)
T ss_dssp CCCSGGGGCCCHHHHHHHHHH--TCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHH
T ss_pred CCCCHhhcCCCHHHHHHHHHc--CCCCCCHHHHHHHHHHhCCCCEEEECCCCCCchHHHHHH
Confidence 345788886666666555442 122233222211 112357999999999999765543
No 289
>1x6v_B Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthethase 1; transferase, ATP sulfurylase, APS kinase, PAPS; HET: ADP; 1.75A {Homo sapiens} SCOP: b.122.1.3 c.26.1.5 c.37.1.4 PDB: 1xjq_B* 1xnj_B* 2qjf_A* 2ofx_A* 2ofw_A*
Probab=94.80 E-value=0.019 Score=64.92 Aligned_cols=38 Identities=26% Similarity=0.378 Sum_probs=32.8
Q ss_pred CCCceEEeCCCCChHHHHHHHHHHhc---CCCeeeechhhh
Q 007575 364 PPRGVLLVGLPGTGKTLLAKAVAGEA---EVPFISCSASEF 401 (597)
Q Consensus 364 ~p~gVLL~GPPGTGKT~LArAIA~el---~~pfi~is~sef 401 (597)
.+.-|+|.|+||+|||++|++++..+ |.+++.++...+
T Consensus 51 ~g~lIvLtGlsGSGKSTlAr~La~~L~~~G~~~v~lDgD~i 91 (630)
T 1x6v_B 51 RGCTVWLTGLSGAGKTTVSMALEEYLVCHGIPCYTLDGDNI 91 (630)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEESHHHH
T ss_pred CCCEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEechHHh
Confidence 35568999999999999999999998 999998876544
No 290
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=94.77 E-value=0.024 Score=57.92 Aligned_cols=28 Identities=18% Similarity=0.328 Sum_probs=24.1
Q ss_pred CCCCceEEeCCCCChHHHHHHHHHHhcC
Q 007575 363 RPPRGVLLVGLPGTGKTLLAKAVAGEAE 390 (597)
Q Consensus 363 ~~p~gVLL~GPPGTGKT~LArAIA~el~ 390 (597)
..|.-|.|.||+|+|||+|++.+++.++
T Consensus 29 ~~~~ii~I~G~sGsGKSTla~~L~~~l~ 56 (290)
T 1odf_A 29 KCPLFIFFSGPQGSGKSFTSIQIYNHLM 56 (290)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhh
Confidence 4556688999999999999999998764
No 291
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=94.76 E-value=0.1 Score=58.13 Aligned_cols=28 Identities=25% Similarity=0.343 Sum_probs=23.6
Q ss_pred CCCCCceEEeCCCCChHHHHHHHHHHhc
Q 007575 362 ARPPRGVLLVGLPGTGKTLLAKAVAGEA 389 (597)
Q Consensus 362 ~~~p~gVLL~GPPGTGKT~LArAIA~el 389 (597)
.++..-+.|+||+|+|||+|++.+++..
T Consensus 364 i~~G~~~~ivG~sGsGKSTll~~l~g~~ 391 (578)
T 4a82_A 364 IEKGETVAFVGMSGGGKSTLINLIPRFY 391 (578)
T ss_dssp ECTTCEEEEECSTTSSHHHHHTTTTTSS
T ss_pred ECCCCEEEEECCCCChHHHHHHHHhcCC
Confidence 3455568899999999999999999864
No 292
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=94.73 E-value=0.047 Score=56.80 Aligned_cols=27 Identities=30% Similarity=0.453 Sum_probs=23.8
Q ss_pred CCCCceEEeCCCCChHHHHHHHHHHhc
Q 007575 363 RPPRGVLLVGLPGTGKTLLAKAVAGEA 389 (597)
Q Consensus 363 ~~p~gVLL~GPPGTGKT~LArAIA~el 389 (597)
.+|.-+.|.||+|+||||+++.+|+.+
T Consensus 127 ~~g~vi~lvG~nGaGKTTll~~Lag~l 153 (328)
T 3e70_C 127 EKPYVIMFVGFNGSGKTTTIAKLANWL 153 (328)
T ss_dssp CSSEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 456678999999999999999999865
No 293
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=94.70 E-value=0.012 Score=63.05 Aligned_cols=32 Identities=22% Similarity=0.370 Sum_probs=26.4
Q ss_pred CCceEEeCCCCChHHHHHHHHHHhcCCCeeee
Q 007575 365 PRGVLLVGLPGTGKTLLAKAVAGEAEVPFISC 396 (597)
Q Consensus 365 p~gVLL~GPPGTGKT~LArAIA~el~~pfi~i 396 (597)
++-|+|.||+|+|||+||..+|..++..++++
T Consensus 2 ~~~i~i~GptgsGKttla~~La~~~~~~iis~ 33 (409)
T 3eph_A 2 KKVIVIAGTTGVGKSQLSIQLAQKFNGEVINS 33 (409)
T ss_dssp CEEEEEEECSSSSHHHHHHHHHHHHTEEEEEC
T ss_pred CcEEEEECcchhhHHHHHHHHHHHCCCeEeec
Confidence 34578999999999999999999877665554
No 294
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=94.68 E-value=0.017 Score=55.92 Aligned_cols=26 Identities=23% Similarity=0.229 Sum_probs=16.4
Q ss_pred CCCceEEeCCCCChHHHHHHHHH-Hhc
Q 007575 364 PPRGVLLVGLPGTGKTLLAKAVA-GEA 389 (597)
Q Consensus 364 ~p~gVLL~GPPGTGKT~LArAIA-~el 389 (597)
.+.-+.|.||+|+|||+|++.++ +..
T Consensus 26 ~G~ii~l~Gp~GsGKSTl~~~L~~~~~ 52 (231)
T 3lnc_A 26 VGVILVLSSPSGCGKTTVANKLLEKQK 52 (231)
T ss_dssp CCCEEEEECSCC----CHHHHHHC---
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhcCC
Confidence 34558899999999999999999 765
No 295
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=94.63 E-value=0.073 Score=56.31 Aligned_cols=26 Identities=23% Similarity=0.263 Sum_probs=22.0
Q ss_pred CCCceEEeCCCCChHHHHHHHHHHhc
Q 007575 364 PPRGVLLVGLPGTGKTLLAKAVAGEA 389 (597)
Q Consensus 364 ~p~gVLL~GPPGTGKT~LArAIA~el 389 (597)
...-+-|.||+|+|||||++++++-.
T Consensus 53 ~Gei~~IiGpnGaGKSTLlr~i~GL~ 78 (366)
T 3tui_C 53 AGQIYGVIGASGAGKSTLIRCVNLLE 78 (366)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CCCEEEEEcCCCchHHHHHHHHhcCC
Confidence 34458899999999999999999853
No 296
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=94.62 E-value=0.058 Score=59.30 Aligned_cols=28 Identities=32% Similarity=0.501 Sum_probs=23.8
Q ss_pred CCCCCceEEeCCCCChHHHHHHHHHHhc
Q 007575 362 ARPPRGVLLVGLPGTGKTLLAKAVAGEA 389 (597)
Q Consensus 362 ~~~p~gVLL~GPPGTGKT~LArAIA~el 389 (597)
...+.-++|.||+|+|||+|++.|++.+
T Consensus 290 i~~GeVI~LVGpNGSGKTTLl~~LAgll 317 (503)
T 2yhs_A 290 GKAPFVILMVGVNGVGKTTTIGKLARQF 317 (503)
T ss_dssp SCTTEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred ccCCeEEEEECCCcccHHHHHHHHHHHh
Confidence 3445668899999999999999999865
No 297
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=94.60 E-value=0.023 Score=59.65 Aligned_cols=71 Identities=23% Similarity=0.332 Sum_probs=45.1
Q ss_pred CCCceEEeCCCCChHHHHHHHHHHhcCC--Ceeeechh-hhH-----HH--Hh-------hc-chHHHHHHHHHHHhcCC
Q 007575 364 PPRGVLLVGLPGTGKTLLAKAVAGEAEV--PFISCSAS-EFV-----EL--YV-------GM-GASRVRDLFARAKKEAP 425 (597)
Q Consensus 364 ~p~gVLL~GPPGTGKT~LArAIA~el~~--pfi~is~s-ef~-----~~--~v-------G~-~e~~vr~lF~~A~~~aP 425 (597)
....++|+||+|+|||+|++++++.... -.+.+... ++. .. ++ +. ....+++.+..+....|
T Consensus 174 ~G~~i~ivG~sGsGKSTll~~l~~~~~~~~g~I~ie~~~e~~~~~~~~~v~~v~~q~~~~~~~~~~t~~~~i~~~l~~~p 253 (361)
T 2gza_A 174 LERVIVVAGETGSGKTTLMKALMQEIPFDQRLITIEDVPELFLPDHPNHVHLFYPSEAKEEENAPVTAATLLRSCLRMKP 253 (361)
T ss_dssp TTCCEEEEESSSSCHHHHHHHHHTTSCTTSCEEEEESSSCCCCTTCSSEEEEECC----------CCHHHHHHHHTTSCC
T ss_pred cCCEEEEECCCCCCHHHHHHHHHhcCCCCceEEEECCccccCccccCCEEEEeecCccccccccccCHHHHHHHHHhcCC
Confidence 4457999999999999999999997642 22222211 100 00 01 10 22246677888888889
Q ss_pred eEEEEcCcc
Q 007575 426 SIIFIDEID 434 (597)
Q Consensus 426 ~ILfIDEID 434 (597)
.+++++|+.
T Consensus 254 d~~l~~e~r 262 (361)
T 2gza_A 254 TRILLAELR 262 (361)
T ss_dssp SEEEESCCC
T ss_pred CEEEEcCch
Confidence 999999975
No 298
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=94.56 E-value=0.077 Score=54.10 Aligned_cols=72 Identities=29% Similarity=0.288 Sum_probs=44.4
Q ss_pred CCCceEEeCCCCChHHHHHHHHHHhc---CCCeeeechh----hh---HHHH---hh---------cc-hHHHHHHHHHH
Q 007575 364 PPRGVLLVGLPGTGKTLLAKAVAGEA---EVPFISCSAS----EF---VELY---VG---------MG-ASRVRDLFARA 420 (597)
Q Consensus 364 ~p~gVLL~GPPGTGKT~LArAIA~el---~~pfi~is~s----ef---~~~~---vG---------~~-e~~vr~lF~~A 420 (597)
.+..+.++|++|+|||+++..+|..+ +..+..+++. .. ...+ .+ .. ....+..+..+
T Consensus 97 ~~~~i~i~g~~G~GKTT~~~~la~~~~~~~~~v~l~~~d~~~~~~~~ql~~~~~~~~l~~~~~~~~~~p~~l~~~~l~~~ 176 (295)
T 1ls1_A 97 DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQRPAAREQLRLLGEKVGVPVLEVMDGESPESIRRRVEEKA 176 (295)
T ss_dssp SSEEEEEECCTTTTHHHHHHHHHHHHHHTTCCEEEEECCSSCHHHHHHHHHHHHHHTCCEEECCTTCCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEecCCcccHhHHHHHHHhcccCCeEEEEcCCCCCHHHHHHHHHHHH
Confidence 45668889999999999999998764 3344433321 00 0000 00 01 12235667777
Q ss_pred HhcCCeEEEEcCcch
Q 007575 421 KKEAPSIIFIDEIDA 435 (597)
Q Consensus 421 ~~~aP~ILfIDEIDa 435 (597)
....+.+|+||+--.
T Consensus 177 ~~~~~D~viiDtpp~ 191 (295)
T 1ls1_A 177 RLEARDLILVDTAGR 191 (295)
T ss_dssp HHHTCCEEEEECCCC
T ss_pred HhCCCCEEEEeCCCC
Confidence 656788999999744
No 299
>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A
Probab=94.55 E-value=0.3 Score=50.03 Aligned_cols=56 Identities=20% Similarity=0.090 Sum_probs=32.4
Q ss_pred cccccccCChHHHHHHHHHHHHhcChhHHhhcC---CCCCCceEEeCCCCChHHHHHHHHH
Q 007575 329 ITFADVAGVDEAKEELEEIVEFLRSPDKYIRLG---ARPPRGVLLVGLPGTGKTLLAKAVA 386 (597)
Q Consensus 329 vtf~dV~G~de~k~~L~eiv~~l~~p~~~~~lg---~~~p~gVLL~GPPGTGKT~LArAIA 386 (597)
.+|+++.-.++..+.|.+. .+..+..++... ....+.+++.+|+|+|||..+-..+
T Consensus 8 ~~f~~~~l~~~l~~~l~~~--g~~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~ 66 (391)
T 1xti_A 8 SGFRDFLLKPELLRAIVDC--GFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLAT 66 (391)
T ss_dssp -CGGGGCCCHHHHHHHHHH--SCCSCCHHHHHHHHHHTTTCCEEEECSSCSSHHHHHHHHH
T ss_pred CChhhcCCCHHHHHHHHHC--CCCCCCHHHHHHHHHHhcCCcEEEECCCCCcHHHHHHHHH
Confidence 4577776666665555542 122233332221 1124679999999999998765443
No 300
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=94.48 E-value=0.045 Score=59.09 Aligned_cols=71 Identities=25% Similarity=0.379 Sum_probs=45.5
Q ss_pred CCCCceEEeCCCCChHHHHHHHHHHhc----CCCeeeechhhh----HHH---H---hh---------c-chHHHHHHHH
Q 007575 363 RPPRGVLLVGLPGTGKTLLAKAVAGEA----EVPFISCSASEF----VEL---Y---VG---------M-GASRVRDLFA 418 (597)
Q Consensus 363 ~~p~gVLL~GPPGTGKT~LArAIA~el----~~pfi~is~sef----~~~---~---vG---------~-~e~~vr~lF~ 418 (597)
..|+.++++|++|+|||+++-.+|..+ |..+..+++.-+ ... + .+ . ....+++.+.
T Consensus 98 ~~~~vI~ivG~~GvGKTT~a~~LA~~l~~~~G~kVllvd~D~~r~~a~~ql~~~~~~~~l~v~~~~~~~dp~~i~~~~l~ 177 (433)
T 2xxa_A 98 QPPAVVLMAGLQGAGKTTSVGKLGKFLREKHKKKVLVVSADVYRPAAIKQLETLAEQVGVDFFPSDVGQKPVDIVNAALK 177 (433)
T ss_dssp SSSEEEEEECSTTSSHHHHHHHHHHHHHHTSCCCEEEEECCCSSTTHHHHHHHHHHHHTCEECCCCSSSCHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEEecCCCCccHHHHHHhhcccCCeeEEeCCCCCCHHHHHHHHHH
Confidence 457789999999999999999998643 666666655421 110 0 01 0 1223366677
Q ss_pred HHHhcCCeEEEEcCc
Q 007575 419 RAKKEAPSIIFIDEI 433 (597)
Q Consensus 419 ~A~~~aP~ILfIDEI 433 (597)
.++.....+++||=.
T Consensus 178 ~~~~~~~D~VIIDTp 192 (433)
T 2xxa_A 178 EAKLKFYDVLLVDTA 192 (433)
T ss_dssp HHHHTTCSEEEEECC
T ss_pred HHHhCCCCEEEEECC
Confidence 776555679999874
No 301
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=94.47 E-value=0.068 Score=59.84 Aligned_cols=28 Identities=32% Similarity=0.452 Sum_probs=23.9
Q ss_pred CCCCCceEEeCCCCChHHHHHHHHHHhc
Q 007575 362 ARPPRGVLLVGLPGTGKTLLAKAVAGEA 389 (597)
Q Consensus 362 ~~~p~gVLL~GPPGTGKT~LArAIA~el 389 (597)
.++...+.|.||+|+|||+|++.+++..
T Consensus 378 i~~G~~~~ivG~sGsGKSTll~~l~g~~ 405 (598)
T 3qf4_B 378 IKPGQKVALVGPTGSGKTTIVNLLMRFY 405 (598)
T ss_dssp CCTTCEEEEECCTTSSTTHHHHHHTTSS
T ss_pred EcCCCEEEEECCCCCcHHHHHHHHhcCc
Confidence 4455668999999999999999999854
No 302
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=94.45 E-value=0.021 Score=55.29 Aligned_cols=27 Identities=26% Similarity=0.332 Sum_probs=23.0
Q ss_pred CCCCceEEeCCCCChHHHHHHHHHHhc
Q 007575 363 RPPRGVLLVGLPGTGKTLLAKAVAGEA 389 (597)
Q Consensus 363 ~~p~gVLL~GPPGTGKT~LArAIA~el 389 (597)
..+.-+.|.||+|+|||+|++.+++..
T Consensus 21 ~~G~~~~lvGpsGsGKSTLl~~L~g~~ 47 (218)
T 1z6g_A 21 NNIYPLVICGPSGVGKGTLIKKLLNEF 47 (218)
T ss_dssp -CCCCEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 344568899999999999999999976
No 303
>3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens}
Probab=94.35 E-value=0.11 Score=53.72 Aligned_cols=54 Identities=17% Similarity=0.114 Sum_probs=30.1
Q ss_pred cccccccCChHHHHHHHHHHHHhcChhHHhhcC---CCCCCceEEeCCCCChHHHHHHH
Q 007575 329 ITFADVAGVDEAKEELEEIVEFLRSPDKYIRLG---ARPPRGVLLVGLPGTGKTLLAKA 384 (597)
Q Consensus 329 vtf~dV~G~de~k~~L~eiv~~l~~p~~~~~lg---~~~p~gVLL~GPPGTGKT~LArA 384 (597)
.+|+++.-.+...+.|.+. .+..+..++... ....+.+++.+|+|+|||+.+-.
T Consensus 40 ~~f~~~~l~~~~~~~l~~~--~~~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~ 96 (414)
T 3eiq_A 40 DSFDDMNLSESLLRGIYAY--GFEKPSAIQQRAILPCIKGYDVIAQAQSGTGKTATFAI 96 (414)
T ss_dssp CCGGGGCCCHHHHHHHHHT--TCCSCCHHHHHHHHHHHTTCCEEECCCSCSSSHHHHHH
T ss_pred cCHhhCCCCHHHHHHHHHc--CCCCCCHHHHHHhHHHhCCCCEEEECCCCCcccHHHHH
Confidence 4577766556655555431 122222222211 11235699999999999987443
No 304
>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A
Probab=94.35 E-value=0.08 Score=57.34 Aligned_cols=35 Identities=31% Similarity=0.545 Sum_probs=26.9
Q ss_pred CCceEEeCCCCChHHHHHHHHHHhcC---CCeeeechh
Q 007575 365 PRGVLLVGLPGTGKTLLAKAVAGEAE---VPFISCSAS 399 (597)
Q Consensus 365 p~gVLL~GPPGTGKT~LArAIA~el~---~pfi~is~s 399 (597)
+..|+|+|.||+|||++++.++..++ .+...++..
T Consensus 39 ~~~IvlvGlpGsGKSTia~~La~~l~~~~~~t~~~~~d 76 (469)
T 1bif_A 39 PTLIVMVGLPARGKTYISKKLTRYLNFIGVPTREFNVG 76 (469)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHH
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHHhccCCCceEEecc
Confidence 45699999999999999999998764 344444433
No 305
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=94.35 E-value=0.045 Score=56.64 Aligned_cols=36 Identities=25% Similarity=0.246 Sum_probs=27.5
Q ss_pred CCCCCceEEeCCCCChHHHHHHHHHHhc---CCCeeeec
Q 007575 362 ARPPRGVLLVGLPGTGKTLLAKAVAGEA---EVPFISCS 397 (597)
Q Consensus 362 ~~~p~gVLL~GPPGTGKT~LArAIA~el---~~pfi~is 397 (597)
...+.-++|+||+|+|||+++..+|..+ +..+..++
T Consensus 102 ~~~~~vI~ivG~~G~GKTT~~~~LA~~l~~~g~kVllid 140 (320)
T 1zu4_A 102 ENRLNIFMLVGVNGTGKTTSLAKMANYYAELGYKVLIAA 140 (320)
T ss_dssp TTSCEEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEe
Confidence 3456779999999999999999998764 44444443
No 306
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=94.34 E-value=0.033 Score=60.09 Aligned_cols=35 Identities=31% Similarity=0.336 Sum_probs=27.2
Q ss_pred CCCceEEeCCCCChHHHHHHHHHHhc---CCCeeeech
Q 007575 364 PPRGVLLVGLPGTGKTLLAKAVAGEA---EVPFISCSA 398 (597)
Q Consensus 364 ~p~gVLL~GPPGTGKT~LArAIA~el---~~pfi~is~ 398 (597)
.|..|+|+|+||+|||+++..+|..+ |..+..+++
T Consensus 98 ~~~vI~ivG~~GvGKTTla~~La~~l~~~G~kVllv~~ 135 (432)
T 2v3c_C 98 KQNVILLVGIQGSGKTTTAAKLARYIQKRGLKPALIAA 135 (432)
T ss_dssp SCCCEEEECCSSSSTTHHHHHHHHHHHHHHCCEEEECC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEec
Confidence 45689999999999999999999865 344444443
No 307
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=94.26 E-value=0.019 Score=56.40 Aligned_cols=28 Identities=14% Similarity=0.137 Sum_probs=23.9
Q ss_pred CCceEEeCCCCChHHHHHHHHHHhcCCC
Q 007575 365 PRGVLLVGLPGTGKTLLAKAVAGEAEVP 392 (597)
Q Consensus 365 p~gVLL~GPPGTGKT~LArAIA~el~~p 392 (597)
+.-+-|.||+|+||||+++.+++.+|..
T Consensus 25 g~iigI~G~~GsGKSTl~k~L~~~lG~~ 52 (245)
T 2jeo_A 25 PFLIGVSGGTASGKSTVCEKIMELLGQN 52 (245)
T ss_dssp SEEEEEECSTTSSHHHHHHHHHHHHTGG
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHhchh
Confidence 3347799999999999999999987754
No 308
>3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A*
Probab=94.24 E-value=0.18 Score=51.43 Aligned_cols=21 Identities=33% Similarity=0.465 Sum_probs=17.3
Q ss_pred CCceEEeCCCCChHHHHHHHH
Q 007575 365 PRGVLLVGLPGTGKTLLAKAV 385 (597)
Q Consensus 365 p~gVLL~GPPGTGKT~LArAI 385 (597)
++.+++.+|+|+|||+.+-..
T Consensus 44 ~~~~lv~a~TGsGKT~~~~~~ 64 (395)
T 3pey_A 44 PRNMIAQSQSGTGKTAAFSLT 64 (395)
T ss_dssp CCCEEEECCTTSCHHHHHHHH
T ss_pred CCeEEEECCCCCcHHHHHHHH
Confidence 468999999999999865543
No 309
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=94.22 E-value=0.13 Score=53.52 Aligned_cols=25 Identities=28% Similarity=0.453 Sum_probs=21.8
Q ss_pred CCceEEeCCCCChHHHHHHHHHHhc
Q 007575 365 PRGVLLVGLPGTGKTLLAKAVAGEA 389 (597)
Q Consensus 365 p~gVLL~GPPGTGKT~LArAIA~el 389 (597)
+.-|.|+|+||+|||+|+.+++..+
T Consensus 79 ~~~I~i~G~~G~GKSTl~~~L~~~l 103 (355)
T 3p32_A 79 AHRVGITGVPGVGKSTAIEALGMHL 103 (355)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHH
Confidence 4468999999999999999998764
No 310
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=94.21 E-value=0.026 Score=53.91 Aligned_cols=27 Identities=22% Similarity=0.322 Sum_probs=23.3
Q ss_pred CCCceEEeCCCCChHHHHHHHHHHhcC
Q 007575 364 PPRGVLLVGLPGTGKTLLAKAVAGEAE 390 (597)
Q Consensus 364 ~p~gVLL~GPPGTGKT~LArAIA~el~ 390 (597)
...-+.|.||+|+|||+|++++++...
T Consensus 19 ~Gei~~l~GpnGsGKSTLl~~l~gl~~ 45 (207)
T 1znw_A 19 VGRVVVLSGPSAVGKSTVVRCLRERIP 45 (207)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHHHST
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhCC
Confidence 344588999999999999999999864
No 311
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=94.21 E-value=0.047 Score=60.11 Aligned_cols=36 Identities=25% Similarity=0.207 Sum_probs=26.7
Q ss_pred CCCCceEEeCCCCChHHHHHHHHHHhc---CCCeeeech
Q 007575 363 RPPRGVLLVGLPGTGKTLLAKAVAGEA---EVPFISCSA 398 (597)
Q Consensus 363 ~~p~gVLL~GPPGTGKT~LArAIA~el---~~pfi~is~ 398 (597)
..+..|+|+|+||+|||+++..+|..+ |..+..+++
T Consensus 99 ~~~~vI~ivG~~GvGKTTl~~kLA~~l~~~G~kVllVd~ 137 (504)
T 2j37_W 99 GKQNVIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLICA 137 (504)
T ss_dssp S--EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEE
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEec
Confidence 346679999999999999999998654 555555554
No 312
>2oxc_A Probable ATP-dependent RNA helicase DDX20; DEAD, structural genomics, structural genomics consortium, SGC, hydrolase; HET: ADP; 1.30A {Homo sapiens} PDB: 3b7g_A*
Probab=94.20 E-value=0.23 Score=47.71 Aligned_cols=54 Identities=19% Similarity=0.172 Sum_probs=31.5
Q ss_pred CCcccccccCChHHHHHHHHHHHHhcChhHHhhcC---CCCCCceEEeCCCCChHHHHH
Q 007575 327 DTITFADVAGVDEAKEELEEIVEFLRSPDKYIRLG---ARPPRGVLLVGLPGTGKTLLA 382 (597)
Q Consensus 327 ~~vtf~dV~G~de~k~~L~eiv~~l~~p~~~~~lg---~~~p~gVLL~GPPGTGKT~LA 382 (597)
+..+|+++.-.++..+.|.+. .+..+..++... ....+.+++.+|+|+|||..+
T Consensus 22 ~~~~f~~l~l~~~l~~~l~~~--g~~~~~~~Q~~~i~~~~~~~~~l~~a~TGsGKT~~~ 78 (230)
T 2oxc_A 22 EPADFESLLLSRPVLEGLRAA--GFERPSPVQLKAIPLGRCGLDLIVQAKSGTGKTCVF 78 (230)
T ss_dssp --CCGGGGTCCHHHHHHHHHT--TCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHH
T ss_pred CCCCHhhcCCCHHHHHHHHHC--CCCCCCHHHHHHHHHHhCCCCEEEECCCCCcHHHHH
Confidence 346788886666665555442 123333333211 112467999999999999763
No 313
>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*
Probab=94.18 E-value=0.098 Score=61.70 Aligned_cols=23 Identities=13% Similarity=0.063 Sum_probs=19.8
Q ss_pred CCceEEeCCCCChHHHHHHHHHH
Q 007575 365 PRGVLLVGLPGTGKTLLAKAVAG 387 (597)
Q Consensus 365 p~gVLL~GPPGTGKT~LArAIA~ 387 (597)
..-++|.||.|+|||++.|.++.
T Consensus 662 g~i~~ItGpNGsGKSTlLr~ial 684 (934)
T 3thx_A 662 QMFHIITGPNMGGKSTYIRQTGV 684 (934)
T ss_dssp BCEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 34589999999999999999943
No 314
>3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural genomics, structural GEN consortium, SGC, ATP-binding, hydrolase; HET: AMP PGE; 1.40A {Homo sapiens}
Probab=94.18 E-value=0.14 Score=50.28 Aligned_cols=55 Identities=25% Similarity=0.243 Sum_probs=31.1
Q ss_pred CCcccccccCChHHHHHHHHHHHHhcChhHHhhcC---CCCCCceEEeCCCCChHHHHHH
Q 007575 327 DTITFADVAGVDEAKEELEEIVEFLRSPDKYIRLG---ARPPRGVLLVGLPGTGKTLLAK 383 (597)
Q Consensus 327 ~~vtf~dV~G~de~k~~L~eiv~~l~~p~~~~~lg---~~~p~gVLL~GPPGTGKT~LAr 383 (597)
+..+|+++.-.++..+.|.+.- +..+..++... ....+.+++.+|+|+|||..+-
T Consensus 41 ~~~~f~~l~l~~~l~~~l~~~g--~~~~~~~Q~~~i~~i~~~~~~lv~a~TGsGKT~~~~ 98 (249)
T 3ber_A 41 ETKTFKDLGVTDVLCEACDQLG--WTKPTKIQIEAIPLALQGRDIIGLAETGSGKTGAFA 98 (249)
T ss_dssp HHCCTGGGTCCHHHHHHHHHTT--CCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHH
T ss_pred ccCCHHHcCCCHHHHHHHHHcC--CCCCCHHHHHHHHHHhCCCCEEEEcCCCCCchhHhH
Confidence 3456888765555554444321 22233222211 1123679999999999997643
No 315
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=94.17 E-value=0.027 Score=52.28 Aligned_cols=27 Identities=30% Similarity=0.292 Sum_probs=23.3
Q ss_pred CCCCceEEeCCCCChHHHHHHHHHHhc
Q 007575 363 RPPRGVLLVGLPGTGKTLLAKAVAGEA 389 (597)
Q Consensus 363 ~~p~gVLL~GPPGTGKT~LArAIA~el 389 (597)
.+..-+.|.||.|+|||+|++++++.+
T Consensus 31 ~~Ge~v~L~G~nGaGKTTLlr~l~g~l 57 (158)
T 1htw_A 31 EKAIMVYLNGDLGAGKTTLTRGMLQGI 57 (158)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHHHT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHhC
Confidence 334458899999999999999999987
No 316
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=94.14 E-value=0.036 Score=56.93 Aligned_cols=28 Identities=32% Similarity=0.463 Sum_probs=24.1
Q ss_pred CCCCCceEEeCCCCChHHHHHHHHHHhc
Q 007575 362 ARPPRGVLLVGLPGTGKTLLAKAVAGEA 389 (597)
Q Consensus 362 ~~~p~gVLL~GPPGTGKT~LArAIA~el 389 (597)
...+.-+.|.||+|+||||+++.+|+.+
T Consensus 97 ~~~g~vi~lvG~nGsGKTTll~~Lag~l 124 (302)
T 3b9q_A 97 FRKPAVIMIVGVNGGGKTTSLGKLAHRL 124 (302)
T ss_dssp SSSCEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred cCCCcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 3456678899999999999999999865
No 317
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=94.08 E-value=0.043 Score=50.69 Aligned_cols=27 Identities=19% Similarity=0.345 Sum_probs=23.1
Q ss_pred CCCCceEEeCCCCChHHHHHHHHHHhc
Q 007575 363 RPPRGVLLVGLPGTGKTLLAKAVAGEA 389 (597)
Q Consensus 363 ~~p~gVLL~GPPGTGKT~LArAIA~el 389 (597)
.....|+|.|++|+|||+|+.++.+..
T Consensus 46 ~~~~~i~vvG~~g~GKSsll~~l~~~~ 72 (193)
T 2ged_A 46 SYQPSIIIAGPQNSGKTSLLTLLTTDS 72 (193)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHSS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 345579999999999999999998753
No 318
>2fwr_A DNA repair protein RAD25; DNA unwinding, XPB, DNA binding protein; HET: DNA; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.19 c.37.1.19 PDB: 2fzl_A*
Probab=94.06 E-value=0.1 Score=55.78 Aligned_cols=37 Identities=27% Similarity=0.296 Sum_probs=28.7
Q ss_pred ceEEeCCCCChHHHHHHHHHHhcCCCeeeechh-hhHH
Q 007575 367 GVLLVGLPGTGKTLLAKAVAGEAEVPFISCSAS-EFVE 403 (597)
Q Consensus 367 gVLL~GPPGTGKT~LArAIA~el~~pfi~is~s-ef~~ 403 (597)
.++|++|+|+|||..+-+++.+.+.+.+.+-.. .+..
T Consensus 110 ~~ll~~~TGsGKT~~~l~~i~~~~~~~Lvl~P~~~L~~ 147 (472)
T 2fwr_A 110 RGCIVLPTGSGKTHVAMAAINELSTPTLIVVPTLALAE 147 (472)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHCSCEEEEESSHHHHH
T ss_pred CEEEEeCCCCCHHHHHHHHHHHcCCCEEEEECCHHHHH
Confidence 489999999999999988888877776666444 4433
No 319
>1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 2vso_A* 2vsx_A*
Probab=94.06 E-value=0.13 Score=52.66 Aligned_cols=55 Identities=18% Similarity=0.097 Sum_probs=32.1
Q ss_pred CCcccccccCChHHHHHHHHHHHHhcChhHHhhcCC---CCCCceEEeCCCCChHHHHHH
Q 007575 327 DTITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGA---RPPRGVLLVGLPGTGKTLLAK 383 (597)
Q Consensus 327 ~~vtf~dV~G~de~k~~L~eiv~~l~~p~~~~~lg~---~~p~gVLL~GPPGTGKT~LAr 383 (597)
+..+|+++.-.++..+.|...- +..+..++.... ...+.+++.+|+|+|||..+-
T Consensus 19 ~~~~f~~~~l~~~l~~~l~~~g--~~~~~~~Q~~~i~~i~~~~~~lv~~~TGsGKT~~~~ 76 (394)
T 1fuu_A 19 VVYKFDDMELDENLLRGVFGYG--FEEPSAIQQRAIMPIIEGHDVLAQAQSGTGKTGTFS 76 (394)
T ss_dssp CCCSSGGGCCCHHHHHHHHHHT--CCSCCHHHHHHHHHHHHTCCEEECCCSSHHHHHHHH
T ss_pred ccCChhhcCCCHHHHHHHHHcC--CCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHH
Confidence 4467888866666655555421 222322222111 113569999999999998743
No 320
>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A
Probab=94.00 E-value=0.21 Score=51.63 Aligned_cols=58 Identities=22% Similarity=0.104 Sum_probs=32.8
Q ss_pred CCcccccccCChHHHHHHHHHHHHhcChhHHhhcCCC---CCCceEEeCCCCChHHHHHHHHH
Q 007575 327 DTITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGAR---PPRGVLLVGLPGTGKTLLAKAVA 386 (597)
Q Consensus 327 ~~vtf~dV~G~de~k~~L~eiv~~l~~p~~~~~lg~~---~p~gVLL~GPPGTGKT~LArAIA 386 (597)
...+|+++.-.++..+.|.+. .+..+..++..... ..+.+++.+|+|+|||+.+-..+
T Consensus 19 ~~~~f~~~~l~~~l~~~l~~~--g~~~~~~~Q~~~i~~i~~~~~~li~a~TGsGKT~~~~~~~ 79 (400)
T 1s2m_A 19 KGNTFEDFYLKRELLMGIFEA--GFEKPSPIQEEAIPVAITGRDILARAKNGTGKTAAFVIPT 79 (400)
T ss_dssp --CCGGGGCCCHHHHHHHHHT--TCCSCCHHHHHHHHHHHHTCCEEEECCTTSCHHHHHHHHH
T ss_pred ccCChhhcCCCHHHHHHHHHC--CCCCCCHHHHHHHHHHhcCCCEEEECCCCcHHHHHHHHHH
Confidence 346788887666666555542 12222222221110 13569999999999998654443
No 321
>1m8p_A Sulfate adenylyltransferase; rossmann fold, phosphosulfate binding, T-state; HET: PPS; 2.60A {Penicillium chrysogenum} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1i2d_A*
Probab=93.99 E-value=0.074 Score=59.45 Aligned_cols=39 Identities=15% Similarity=0.143 Sum_probs=32.5
Q ss_pred CCceEEeCCCCChHHHHHHHHHHhcC----CCeeeechhhhHH
Q 007575 365 PRGVLLVGLPGTGKTLLAKAVAGEAE----VPFISCSASEFVE 403 (597)
Q Consensus 365 p~gVLL~GPPGTGKT~LArAIA~el~----~pfi~is~sef~~ 403 (597)
+..|+|.|+||+|||++|++++..++ .+++.++...+..
T Consensus 396 ~~~I~l~GlsGSGKSTiA~~La~~L~~~G~~~~~~lD~D~ir~ 438 (573)
T 1m8p_A 396 GFTIFLTGYMNSGKDAIARALQVTLNQQGGRSVSLLLGDTVRH 438 (573)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHHHHCSSCEEEEEHHHHHH
T ss_pred ceEEEeecCCCCCHHHHHHHHHHHhcccCCceEEEECcHHHHH
Confidence 45688999999999999999999875 7888887765543
No 322
>2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus}
Probab=93.99 E-value=0.16 Score=57.58 Aligned_cols=57 Identities=19% Similarity=0.223 Sum_probs=32.4
Q ss_pred CCcccccccCChHHHHHHHHHHHHhcChhHHhh----cCCCCCCceEEeCCCCChHHHHHHHH
Q 007575 327 DTITFADVAGVDEAKEELEEIVEFLRSPDKYIR----LGARPPRGVLLVGLPGTGKTLLAKAV 385 (597)
Q Consensus 327 ~~vtf~dV~G~de~k~~L~eiv~~l~~p~~~~~----lg~~~p~gVLL~GPPGTGKT~LArAI 385 (597)
..++|+++.-.+..++.+.+. . +..+..++. ........++++||+|+|||+.+-..
T Consensus 6 ~~~~~~~l~l~~~~~~~l~~~-g-~~~l~~~Q~~~i~~~~~~~~~~lv~apTGsGKT~~~~l~ 66 (715)
T 2va8_A 6 EWMPIEDLKLPSNVIEIIKKR-G-IKKLNPPQTEAVKKGLLEGNRLLLTSPTGSGKTLIAEMG 66 (715)
T ss_dssp CCCBGGGSSSCHHHHHHHHTT-S-CCBCCHHHHHHHHTTTTTTCCEEEECCTTSCHHHHHHHH
T ss_pred ccCcHHHcCCCHHHHHHHHhC-C-CCCCCHHHHHHHHHHhcCCCcEEEEcCCCCcHHHHHHHH
Confidence 346788776555554444331 0 111111111 11234678999999999999988443
No 323
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=93.98 E-value=0.24 Score=55.74 Aligned_cols=25 Identities=36% Similarity=0.449 Sum_probs=21.8
Q ss_pred CCceEEeCCCCChHHHHHHHHHHhc
Q 007575 365 PRGVLLVGLPGTGKTLLAKAVAGEA 389 (597)
Q Consensus 365 p~gVLL~GPPGTGKT~LArAIA~el 389 (597)
..-+-|.||.|+|||||.+.+++..
T Consensus 103 Gei~~LvGpNGaGKSTLLkiL~Gll 127 (608)
T 3j16_B 103 GQVLGLVGTNGIGKSTALKILAGKQ 127 (608)
T ss_dssp TSEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CCEEEEECCCCChHHHHHHHHhcCC
Confidence 3458899999999999999999864
No 324
>2z0m_A 337AA long hypothetical ATP-dependent RNA helicase DEAD; ATP-binding, hydrolase, nucleotide-binding, RNA binding protein, structural genomics; 1.90A {Sulfolobus tokodaii}
Probab=93.97 E-value=0.16 Score=50.71 Aligned_cols=32 Identities=19% Similarity=0.182 Sum_probs=23.5
Q ss_pred CceEEeCCCCChHHHHHHHHHHhcCCCeeeec
Q 007575 366 RGVLLVGLPGTGKTLLAKAVAGEAEVPFISCS 397 (597)
Q Consensus 366 ~gVLL~GPPGTGKT~LArAIA~el~~pfi~is 397 (597)
+.+++.+|+|+|||..+-..+-+.+...+.+.
T Consensus 32 ~~~lv~~~TGsGKT~~~~~~~~~~~~~~liv~ 63 (337)
T 2z0m_A 32 KNVVVRAKTGSGKTAAYAIPILELGMKSLVVT 63 (337)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHHTCCEEEEC
T ss_pred CCEEEEcCCCCcHHHHHHHHHHhhcCCEEEEe
Confidence 46999999999999877666655555544443
No 325
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=93.96 E-value=0.031 Score=57.67 Aligned_cols=29 Identities=24% Similarity=0.432 Sum_probs=25.3
Q ss_pred CCCCCCceEEeCCCCChHHHHHHHHHHhc
Q 007575 361 GARPPRGVLLVGLPGTGKTLLAKAVAGEA 389 (597)
Q Consensus 361 g~~~p~gVLL~GPPGTGKT~LArAIA~el 389 (597)
..++...+.|+||+|+|||+|++.|++.+
T Consensus 122 ~i~~Ge~vaIvGpsGsGKSTLl~lL~gl~ 150 (305)
T 2v9p_A 122 GIPKKNCLAFIGPPNTGKSMLCNSLIHFL 150 (305)
T ss_dssp TCTTCSEEEEECSSSSSHHHHHHHHHHHH
T ss_pred EecCCCEEEEECCCCCcHHHHHHHHhhhc
Confidence 45566679999999999999999999876
No 326
>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11
Probab=93.88 E-value=0.06 Score=58.81 Aligned_cols=23 Identities=30% Similarity=0.426 Sum_probs=20.2
Q ss_pred ceEEeCCCCChHHHHHHHHHHhc
Q 007575 367 GVLLVGLPGTGKTLLAKAVAGEA 389 (597)
Q Consensus 367 gVLL~GPPGTGKT~LArAIA~el 389 (597)
.++|+||+|+|||+|+..++...
T Consensus 153 ~~~i~G~sGvGKTtL~~~l~~~~ 175 (473)
T 1sky_E 153 KIGLFGGAGVGKTVLIQELIHNI 175 (473)
T ss_dssp EEEEECCSSSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCccHHHHHHHhhh
Confidence 48999999999999999887653
No 327
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=93.87 E-value=0.013 Score=55.61 Aligned_cols=24 Identities=25% Similarity=0.475 Sum_probs=21.5
Q ss_pred ceEEeCCCCChHHHHHHHHHHhcC
Q 007575 367 GVLLVGLPGTGKTLLAKAVAGEAE 390 (597)
Q Consensus 367 gVLL~GPPGTGKT~LArAIA~el~ 390 (597)
-|.|.|++|+|||++++.++..++
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~~l~ 25 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSGAFR 25 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHH
Confidence 378999999999999999998874
No 328
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19
Probab=93.86 E-value=0.11 Score=54.07 Aligned_cols=32 Identities=28% Similarity=0.281 Sum_probs=24.0
Q ss_pred ceEEeCCCCChHHHHHHHHHHhc----CCCeeeech
Q 007575 367 GVLLVGLPGTGKTLLAKAVAGEA----EVPFISCSA 398 (597)
Q Consensus 367 gVLL~GPPGTGKT~LArAIA~el----~~pfi~is~ 398 (597)
++++.+|+|+|||..+-+++.+. +.+++.+-.
T Consensus 25 ~~ll~~~tG~GKT~~~~~~~~~~~~~~~~~~liv~P 60 (494)
T 1wp9_A 25 NCLIVLPTGLGKTLIAMMIAEYRLTKYGGKVLMLAP 60 (494)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHHHHHSCSCEEEECS
T ss_pred CEEEEcCCCCCHHHHHHHHHHHHHhcCCCeEEEEEC
Confidence 69999999999999888876554 445554443
No 329
>2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A*
Probab=93.82 E-value=0.2 Score=56.84 Aligned_cols=19 Identities=32% Similarity=0.447 Sum_probs=16.9
Q ss_pred CCceEEeCCCCChHHHHHH
Q 007575 365 PRGVLLVGLPGTGKTLLAK 383 (597)
Q Consensus 365 p~gVLL~GPPGTGKT~LAr 383 (597)
...++++||+|+|||+.+.
T Consensus 39 ~~~~lv~apTGsGKT~~~~ 57 (720)
T 2zj8_A 39 GKNALISIPTASGKTLIAE 57 (720)
T ss_dssp TCEEEEECCGGGCHHHHHH
T ss_pred CCcEEEEcCCccHHHHHHH
Confidence 5789999999999998874
No 330
>3hdt_A Putative kinase; structura genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; 2.79A {Clostridium symbiosum atcc 14940}
Probab=93.81 E-value=0.027 Score=55.33 Aligned_cols=29 Identities=21% Similarity=0.305 Sum_probs=26.9
Q ss_pred ceEEeCCCCChHHHHHHHHHHhcCCCeee
Q 007575 367 GVLLVGLPGTGKTLLAKAVAGEAEVPFIS 395 (597)
Q Consensus 367 gVLL~GPPGTGKT~LArAIA~el~~pfi~ 395 (597)
-|.|.|++|||||++++.+|..+|.+|+.
T Consensus 16 iI~i~g~~gsGk~~i~~~la~~lg~~~~d 44 (223)
T 3hdt_A 16 IITIEREYGSGGRIVGKKLAEELGIHFYD 44 (223)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHTCEEEC
T ss_pred EEEEeCCCCCCHHHHHHHHHHHcCCcEEc
Confidence 57899999999999999999999999865
No 331
>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A
Probab=93.73 E-value=0.034 Score=53.10 Aligned_cols=31 Identities=26% Similarity=0.401 Sum_probs=27.3
Q ss_pred eEEeCCCCChHHHHHHHHHHhcCCCeeeechh
Q 007575 368 VLLVGLPGTGKTLLAKAVAGEAEVPFISCSAS 399 (597)
Q Consensus 368 VLL~GPPGTGKT~LArAIA~el~~pfi~is~s 399 (597)
+|++|++|+|||++|..++.+ +.|.+++...
T Consensus 2 ilV~Gg~~SGKS~~A~~la~~-~~~~~yiaT~ 32 (180)
T 1c9k_A 2 ILVTGGARSGKSRHAEALIGD-APQVLYIATS 32 (180)
T ss_dssp EEEEECTTSSHHHHHHHHHCS-CSSEEEEECC
T ss_pred EEEECCCCCcHHHHHHHHHhc-CCCeEEEecC
Confidence 799999999999999999988 8888777654
No 332
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=93.68 E-value=0.023 Score=57.93 Aligned_cols=36 Identities=17% Similarity=0.243 Sum_probs=24.7
Q ss_pred CceEEeCCCCChHHHHHHHHHHhcC---CCeeeechhhh
Q 007575 366 RGVLLVGLPGTGKTLLAKAVAGEAE---VPFISCSASEF 401 (597)
Q Consensus 366 ~gVLL~GPPGTGKT~LArAIA~el~---~pfi~is~sef 401 (597)
.-|.|.||+|+|||++|+.++..++ ..+..++++++
T Consensus 6 ~iIgItG~sGSGKSTva~~L~~~lg~~~~~~~vI~~D~~ 44 (290)
T 1a7j_A 6 PIISVTGSSGAGTSTVKHTFDQIFRREGVKAVSIEGDAF 44 (290)
T ss_dssp CEEEEESCC---CCTHHHHHHHHHHHHTCCEEEEEGGGG
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHhhcCCCeeEeecchh
Confidence 3588999999999999999998765 34444555554
No 333
>3ly5_A ATP-dependent RNA helicase DDX18; alpha-beta, structural genomics, structural genomics consort ATP-binding, hydrolase, nucleotide-binding, RNA-B; 2.80A {Homo sapiens}
Probab=93.67 E-value=0.15 Score=50.53 Aligned_cols=18 Identities=39% Similarity=0.497 Sum_probs=15.3
Q ss_pred CceEEeCCCCChHHHHHH
Q 007575 366 RGVLLVGLPGTGKTLLAK 383 (597)
Q Consensus 366 ~gVLL~GPPGTGKT~LAr 383 (597)
+.+++.+|+|+|||..+-
T Consensus 92 ~~~lv~a~TGsGKT~~~~ 109 (262)
T 3ly5_A 92 RDLLAAAKTGSGKTLAFL 109 (262)
T ss_dssp CCCEECCCTTSCHHHHHH
T ss_pred CcEEEEccCCCCchHHHH
Confidence 469999999999997654
No 334
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=93.65 E-value=0.036 Score=59.40 Aligned_cols=54 Identities=17% Similarity=0.268 Sum_probs=47.0
Q ss_pred eeEEEecCCCCCchhHHH--HHhCCceecCCCCC---------------------------CcCcHHHHHHHHHHHHHHH
Q 007575 242 RIVYTTTRPSDIKTPYEK--MLENQVEFGSPDKR---------------------------SGGFLNSALIALFYVAVLA 292 (597)
Q Consensus 242 ~~~~~t~~~~~~~~~~~~--~~~~~v~~~~~~~~---------------------------~~~~~~~~l~~l~~~~~l~ 292 (597)
.++.+||+|+.+|+++.+ ++++.++|+.|+.. +.||.+++|..+|..|++.
T Consensus 289 ~vIaATNrpd~LDpAllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~l~~dvdl~~lA~~t~G~SGADi~~l~~eA~~~ 368 (405)
T 4b4t_J 289 KIIMATNRLDILDPALLRPGRIDRKIEFPPPSVAARAEILRIHSRKMNLTRGINLRKVAEKMNGCSGADVKGVCTEAGMY 368 (405)
T ss_dssp EEEEEESCSSSSCHHHHSTTSSCCEEECCCCCHHHHHHHHHHHHTTSBCCSSCCHHHHHHHCCSCCHHHHHHHHHHHHHH
T ss_pred EEEeccCChhhCCHhHcCCCcCceEEEcCCcCHHHHHHHHHHHhcCCCCCccCCHHHHHHHCCCCCHHHHHHHHHHHHHH
Confidence 468999999999999874 99999999888753 6899999999999999988
Q ss_pred HHH
Q 007575 293 GLL 295 (597)
Q Consensus 293 ~~~ 295 (597)
++.
T Consensus 369 Air 371 (405)
T 4b4t_J 369 ALR 371 (405)
T ss_dssp HHH
T ss_pred HHH
Confidence 764
No 335
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=93.64 E-value=0.037 Score=54.27 Aligned_cols=32 Identities=22% Similarity=0.177 Sum_probs=25.7
Q ss_pred CCCceEEeCCCCChHHHHHHHHHHhcC--CCeee
Q 007575 364 PPRGVLLVGLPGTGKTLLAKAVAGEAE--VPFIS 395 (597)
Q Consensus 364 ~p~gVLL~GPPGTGKT~LArAIA~el~--~pfi~ 395 (597)
.+.-|.|.||||+|||++++.+++.++ .+++.
T Consensus 25 ~g~~i~i~G~~GsGKsT~~~~l~~~l~~~~~~~~ 58 (229)
T 4eaq_A 25 MSAFITFEGPEGSGKTTVINEVYHRLVKDYDVIM 58 (229)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHHHTTTSCEEE
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHhcCCCcee
Confidence 344578899999999999999999876 45543
No 336
>1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A*
Probab=93.63 E-value=0.19 Score=58.41 Aligned_cols=24 Identities=21% Similarity=0.191 Sum_probs=21.1
Q ss_pred CCceEEeCCCCChHHHHHHHHHHh
Q 007575 365 PRGVLLVGLPGTGKTLLAKAVAGE 388 (597)
Q Consensus 365 p~gVLL~GPPGTGKT~LArAIA~e 388 (597)
..-+.|+||.|+|||++.|.+++-
T Consensus 607 g~i~~ItGpNGsGKSTlLr~iagl 630 (800)
T 1wb9_A 607 RRMLIITGPNMGGKSTYMRQTALI 630 (800)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CcEEEEECCCCCChHHHHHHHHHH
Confidence 456889999999999999999874
No 337
>3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A* 4db2_A 4db4_A
Probab=93.63 E-value=0.22 Score=54.46 Aligned_cols=18 Identities=33% Similarity=0.398 Sum_probs=15.5
Q ss_pred CCceEEeCCCCChHHHHH
Q 007575 365 PRGVLLVGLPGTGKTLLA 382 (597)
Q Consensus 365 p~gVLL~GPPGTGKT~LA 382 (597)
.+.+++.+|+|+|||+.+
T Consensus 111 ~~~~lv~apTGsGKTl~~ 128 (563)
T 3i5x_A 111 DHDVIARAKTGTGKTFAF 128 (563)
T ss_dssp SEEEEEECCTTSCHHHHH
T ss_pred CCeEEEECCCCCCccHHH
Confidence 568999999999999753
No 338
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*
Probab=93.60 E-value=0.058 Score=52.96 Aligned_cols=30 Identities=13% Similarity=-0.002 Sum_probs=22.4
Q ss_pred eEEeCCCCChHHHHHHHHHHhc---CCCeeeec
Q 007575 368 VLLVGLPGTGKTLLAKAVAGEA---EVPFISCS 397 (597)
Q Consensus 368 VLL~GPPGTGKT~LArAIA~el---~~pfi~is 397 (597)
.+++||.|+|||+.+-.++..+ +..++.+.
T Consensus 31 ~vitG~MgsGKTT~lL~~a~r~~~~g~kVli~k 63 (214)
T 2j9r_A 31 EVICGSMFSGKSEELIRRVRRTQFAKQHAIVFK 63 (214)
T ss_dssp EEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred EEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEE
Confidence 4589999999998888776654 66655553
No 339
>3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA dependent ATPase, RNA helicase; HET: ANP; 1.91A {Saccharomyces cerevisiae S288C}
Probab=93.58 E-value=0.22 Score=55.03 Aligned_cols=19 Identities=32% Similarity=0.368 Sum_probs=15.8
Q ss_pred CCCceEEeCCCCChHHHHH
Q 007575 364 PPRGVLLVGLPGTGKTLLA 382 (597)
Q Consensus 364 ~p~gVLL~GPPGTGKT~LA 382 (597)
..+.+++.+|+|+|||+.+
T Consensus 59 ~~~dvlv~apTGsGKTl~~ 77 (579)
T 3sqw_A 59 EDHDVIARAKTGTGKTFAF 77 (579)
T ss_dssp SSEEEEEECCTTSCHHHHH
T ss_pred CCCeEEEEcCCCcHHHHHH
Confidence 3567999999999999853
No 340
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=93.55 E-value=0.048 Score=57.48 Aligned_cols=28 Identities=32% Similarity=0.463 Sum_probs=24.2
Q ss_pred CCCCCceEEeCCCCChHHHHHHHHHHhc
Q 007575 362 ARPPRGVLLVGLPGTGKTLLAKAVAGEA 389 (597)
Q Consensus 362 ~~~p~gVLL~GPPGTGKT~LArAIA~el 389 (597)
...+.-+.|.||+|+||||+++.+|+.+
T Consensus 154 ~~~g~vi~lvG~nGsGKTTll~~Lag~l 181 (359)
T 2og2_A 154 FRKPAVIMIVGVNGGGKTTSLGKLAHRL 181 (359)
T ss_dssp SSSSEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred cCCCeEEEEEcCCCChHHHHHHHHHhhc
Confidence 3456678999999999999999999865
No 341
>3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B
Probab=93.49 E-value=0.22 Score=51.28 Aligned_cols=54 Identities=20% Similarity=0.254 Sum_probs=30.6
Q ss_pred CcccccccCChHHHHHHHHHHHHhcChhHHhhc-----CCCCCCceEEeCCCCChHHHHHH
Q 007575 328 TITFADVAGVDEAKEELEEIVEFLRSPDKYIRL-----GARPPRGVLLVGLPGTGKTLLAK 383 (597)
Q Consensus 328 ~vtf~dV~G~de~k~~L~eiv~~l~~p~~~~~l-----g~~~p~gVLL~GPPGTGKT~LAr 383 (597)
..+|+++.-.+...+.|.+.- +..+..++.. -...++.+++.+|+|+|||+.+-
T Consensus 24 ~~~f~~~~l~~~l~~~l~~~g--~~~~~~~Q~~~i~~~~~~~~~~~lv~apTGsGKT~~~~ 82 (412)
T 3fht_A 24 VKSFEELRLKPQLLQGVYAMG--FNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFV 82 (412)
T ss_dssp SSCTGGGTCCHHHHHHHHHTT--CCSCCHHHHHHHHHHHSSSCCCEEEECCTTSCHHHHHH
T ss_pred cCCHhhCCCCHHHHHHHHHcC--CCCCCHHHHHHHHHHhcCCCCeEEEECCCCchHHHHHH
Confidence 345777765665555554411 2222222211 11134689999999999998753
No 342
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=93.40 E-value=0.037 Score=56.62 Aligned_cols=27 Identities=19% Similarity=0.224 Sum_probs=23.2
Q ss_pred CCCceEEeCCCCChHHHHHHHHHHhcC
Q 007575 364 PPRGVLLVGLPGTGKTLLAKAVAGEAE 390 (597)
Q Consensus 364 ~p~gVLL~GPPGTGKT~LArAIA~el~ 390 (597)
.+.-+-|.||+|+|||+|++.+++.++
T Consensus 79 ~g~iigI~G~~GsGKSTl~~~L~~~l~ 105 (308)
T 1sq5_A 79 IPYIISIAGSVAVGKSTTARVLQALLS 105 (308)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHHHHT
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHh
Confidence 344578999999999999999999765
No 343
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=93.38 E-value=0.068 Score=54.67 Aligned_cols=70 Identities=24% Similarity=0.256 Sum_probs=43.6
Q ss_pred CCceEEeCCCCChHHHHHHHHHHhc---CCCeeeechhhh-------HHHH---hh----------cchHHHHHHHHHHH
Q 007575 365 PRGVLLVGLPGTGKTLLAKAVAGEA---EVPFISCSASEF-------VELY---VG----------MGASRVRDLFARAK 421 (597)
Q Consensus 365 p~gVLL~GPPGTGKT~LArAIA~el---~~pfi~is~sef-------~~~~---vG----------~~e~~vr~lF~~A~ 421 (597)
+.-+++.|++|+|||+++..+|..+ +..+..+++.-+ ...+ .+ .....+.+.++.++
T Consensus 98 ~~vi~i~G~~G~GKTT~~~~la~~~~~~g~~v~l~~~D~~r~~a~~ql~~~~~~~~v~v~~~~~~~~p~~~~~~~l~~~~ 177 (297)
T 1j8m_F 98 PYVIMLVGVQGTGKTTTAGKLAYFYKKKGFKVGLVGADVYRPAALEQLQQLGQQIGVPVYGEPGEKDVVGIAKRGVEKFL 177 (297)
T ss_dssp SEEEEEECSSCSSTTHHHHHHHHHHHHTTCCEEEEECCCSSSHHHHHHHHHHHHHTCCEECCTTCCCHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEecCCCCHHHHHHHHHHhccCCeEEEecCCCCCHHHHHHHHHHHHH
Confidence 5678899999999999999998765 445544443311 0001 00 11223356667776
Q ss_pred hcCCeEEEEcCcc
Q 007575 422 KEAPSIIFIDEID 434 (597)
Q Consensus 422 ~~aP~ILfIDEID 434 (597)
.....+|+||=.-
T Consensus 178 ~~~~D~ViIDTpg 190 (297)
T 1j8m_F 178 SEKMEIIIVDTAG 190 (297)
T ss_dssp HTTCSEEEEECCC
T ss_pred hCCCCEEEEeCCC
Confidence 5566799998753
No 344
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=93.18 E-value=0.041 Score=52.54 Aligned_cols=23 Identities=39% Similarity=0.554 Sum_probs=21.0
Q ss_pred ceEEeCCCCChHHHHHHHHHHhc
Q 007575 367 GVLLVGLPGTGKTLLAKAVAGEA 389 (597)
Q Consensus 367 gVLL~GPPGTGKT~LArAIA~el 389 (597)
.+.|.||+|+|||+|++.+++.+
T Consensus 3 ~i~i~G~nG~GKTTll~~l~g~~ 25 (189)
T 2i3b_A 3 HVFLTGPPGVGKTTLIHKASEVL 25 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHHHH
T ss_pred EEEEECCCCChHHHHHHHHHhhc
Confidence 47899999999999999999875
No 345
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=93.15 E-value=0.094 Score=64.13 Aligned_cols=27 Identities=26% Similarity=0.379 Sum_probs=22.7
Q ss_pred CCCCceEEeCCCCChHHHHHHHHHHhc
Q 007575 363 RPPRGVLLVGLPGTGKTLLAKAVAGEA 389 (597)
Q Consensus 363 ~~p~gVLL~GPPGTGKT~LArAIA~el 389 (597)
++...|-|+||+|+|||+|++++.+-+
T Consensus 1103 ~~Ge~vaIVG~SGsGKSTL~~lL~rl~ 1129 (1321)
T 4f4c_A 1103 EPGQTLALVGPSGCGKSTVVALLERFY 1129 (1321)
T ss_dssp CTTCEEEEECSTTSSTTSHHHHHTTSS
T ss_pred CCCCEEEEECCCCChHHHHHHHHhcCc
Confidence 445568899999999999999998754
No 346
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=93.15 E-value=0.11 Score=53.86 Aligned_cols=28 Identities=14% Similarity=0.213 Sum_probs=23.9
Q ss_pred CCCCceEEeCCCCChHHHHHHHHHHhcC
Q 007575 363 RPPRGVLLVGLPGTGKTLLAKAVAGEAE 390 (597)
Q Consensus 363 ~~p~gVLL~GPPGTGKT~LArAIA~el~ 390 (597)
..|.-+.|.||+|+|||++++.+++.++
T Consensus 90 ~~p~iigI~GpsGSGKSTl~~~L~~ll~ 117 (321)
T 3tqc_A 90 KVPYIIGIAGSVAVGKSTTSRVLKALLS 117 (321)
T ss_dssp CCCEEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHhc
Confidence 3455688999999999999999998764
No 347
>3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A*
Probab=93.09 E-value=0.051 Score=56.98 Aligned_cols=20 Identities=25% Similarity=0.408 Sum_probs=16.2
Q ss_pred CceEEeCCCCChHHHHHHHH
Q 007575 366 RGVLLVGLPGTGKTLLAKAV 385 (597)
Q Consensus 366 ~gVLL~GPPGTGKT~LArAI 385 (597)
+.+++.+|+|+|||+.+-..
T Consensus 37 ~~~lv~apTGsGKT~~~l~~ 56 (414)
T 3oiy_A 37 KSFTMVAPTGVGKTTFGMMT 56 (414)
T ss_dssp CCEECCSCSSSSHHHHHHHH
T ss_pred CCEEEEeCCCCCHHHHHHHH
Confidence 57999999999999854443
No 348
>4i1u_A Dephospho-COA kinase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.05A {Burkholderia vietnamiensis} PDB: 4i1v_A*
Probab=93.05 E-value=0.09 Score=51.34 Aligned_cols=131 Identities=15% Similarity=0.230 Sum_probs=70.3
Q ss_pred CCceEEeCCCCChHHHHHHHHHHhcCCCeeeechhhhHHHHhhcchHHHHHHHHHHHhcCCeEEEEc-Ccch--hhhhcC
Q 007575 365 PRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFVELYVGMGASRVRDLFARAKKEAPSIIFID-EIDA--VAKSRD 441 (597)
Q Consensus 365 p~gVLL~GPPGTGKT~LArAIA~el~~pfi~is~sef~~~~vG~~e~~vr~lF~~A~~~aP~ILfID-EIDa--L~~~r~ 441 (597)
...|-|+|..|||||++++.++. +|.|++. ++.+....+..+...+..+++..-.. ++-=| ++|. |+.
T Consensus 9 ~~~iglTGgigsGKStv~~~l~~-~g~~vid--aD~ia~~l~~~~~~~~~~i~~~fG~~---~~~~dg~ldR~~L~~--- 79 (210)
T 4i1u_A 9 MYAIGLTGGIGSGKTTVADLFAA-RGASLVD--TDLIAHRITAPAGLAMPAIEQTFGPA---FVAADGSLDRARMRA--- 79 (210)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHH-TTCEEEE--HHHHHHHHTSTTCTTHHHHHHHHCGG---GBCTTSSBCHHHHHH---
T ss_pred eeEEEEECCCCCCHHHHHHHHHH-CCCcEEE--CcHHHHHHhcCCcHHHHHHHHHhChh---hcCCCCCCcHHHHHH---
Confidence 34688999999999999999988 8988775 45554444433333444444433221 11001 2332 110
Q ss_pred CcccccchhHHHHHHHHHH---------HHhcCCCCCCcEEEEEecCCCCCCC-hhhhCCCCcceEEEecCCCHHHHHHH
Q 007575 442 GRFRIVSNDEREQTLNQLL---------TEMDGFDSNSAVIVLGATNRSDVLD-PALRRPGRFDRVVMVETPDKIGREAI 511 (597)
Q Consensus 442 ~~~~~~~~~e~eqtLnqLL---------~emdg~~~~~~VIVIaaTNrpd~LD-~aLlRpgRFd~~I~v~~Pd~~eR~eI 511 (597)
....+.+..+.||.++ ..+... ...++|+-+ |-.+. ..+.. .||.++.+..|.......+
T Consensus 80 ---~vF~d~~~~~~L~~i~HP~I~~~~~~~~~~~--~~~~vv~d~---pLL~E~~~~~~--~~D~vi~V~ap~e~r~~Rl 149 (210)
T 4i1u_A 80 ---LIFSDEDARRRLEAITHPLIRAETEREARDA--QGPYVIFVV---PLLVESRNWKA--RCDRVLVVDCPVDTQIARV 149 (210)
T ss_dssp ---HHHHCHHHHHHHHHHHHHHHHHHHHHHHHTC--CSSSEEEEC---TTCTTCHHHHH--HCSEEEEEECCHHHHHHHH
T ss_pred ---HHhCCHHHHHHHHHHhhHHHHHHHHHHHHhc--CCCEEEEEE---ecccccCCccc--cCCeEEEEECCHHHHHHHH
Confidence 0112333444444433 223322 233444433 22233 44444 6999999999876666665
Q ss_pred HHH
Q 007575 512 LKV 514 (597)
Q Consensus 512 Lk~ 514 (597)
.+.
T Consensus 150 ~~R 152 (210)
T 4i1u_A 150 MQR 152 (210)
T ss_dssp HHH
T ss_pred Hhc
Confidence 543
No 349
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=93.03 E-value=0.024 Score=56.23 Aligned_cols=31 Identities=10% Similarity=0.164 Sum_probs=25.7
Q ss_pred CCCceEEeCCCCChHHHHHHHHHHhc-CCCee
Q 007575 364 PPRGVLLVGLPGTGKTLLAKAVAGEA-EVPFI 394 (597)
Q Consensus 364 ~p~gVLL~GPPGTGKT~LArAIA~el-~~pfi 394 (597)
.+.-|.|.|++|+|||++++.++..+ +..++
T Consensus 23 ~~~~I~ieG~~GsGKST~~~~L~~~l~~~~~i 54 (263)
T 1p5z_B 23 RIKKISIEGNIAAGKSTFVNILKQLCEDWEVV 54 (263)
T ss_dssp CCEEEEEECSTTSSHHHHHTTTGGGCTTEEEE
T ss_pred CceEEEEECCCCCCHHHHHHHHHHhcCCCEEE
Confidence 34568899999999999999999998 54444
No 350
>3fmp_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 3.19A {Homo sapiens}
Probab=93.01 E-value=0.23 Score=53.13 Aligned_cols=57 Identities=21% Similarity=0.280 Sum_probs=32.2
Q ss_pred cccccccCChHHHHHHHHHHHHhcChhHHhh-----cCCCCCCceEEeCCCCChHHHHH-HHHHH
Q 007575 329 ITFADVAGVDEAKEELEEIVEFLRSPDKYIR-----LGARPPRGVLLVGLPGTGKTLLA-KAVAG 387 (597)
Q Consensus 329 vtf~dV~G~de~k~~L~eiv~~l~~p~~~~~-----lg~~~p~gVLL~GPPGTGKT~LA-rAIA~ 387 (597)
.+|+++.-.++..+.|.+. .+..|..++. +-...++.+|++||+|+|||..+ -++..
T Consensus 92 ~~f~~~~l~~~l~~~l~~~--g~~~p~~~Q~~ai~~il~~~~~~~l~~a~TGsGKT~~~~l~il~ 154 (479)
T 3fmp_B 92 KSFEELRLKPQLLQGVYAM--GFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVLAMLS 154 (479)
T ss_dssp CCSGGGTCCHHHHHHHHHT--TCCSCCHHHHHHHHHHTSBSCCEEEEECCSSSSHHHHHHHHHHT
T ss_pred CCHHHcCCCHHHHHHHHHc--CCCCCCHHHHHHHHHHHcCCCCcEEEEcCCCCchhHHHHHHHHH
Confidence 4677776666655555431 1222222221 11123578999999999999774 33443
No 351
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=92.98 E-value=0.053 Score=51.20 Aligned_cols=27 Identities=26% Similarity=0.203 Sum_probs=22.4
Q ss_pred CCCCceEEeCCCCChHHHHHHHHHHhc
Q 007575 363 RPPRGVLLVGLPGTGKTLLAKAVAGEA 389 (597)
Q Consensus 363 ~~p~gVLL~GPPGTGKT~LArAIA~el 389 (597)
....-+.|.|++|+|||+|++.+++++
T Consensus 4 ~~~~~i~i~G~sGsGKTTl~~~l~~~l 30 (174)
T 1np6_A 4 TMIPLLAFAAWSGTGKTTLLKKLIPAL 30 (174)
T ss_dssp -CCCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CcceEEEEEeCCCCCHHHHHHHHHHhc
Confidence 344568899999999999999998764
No 352
>3fmo_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 2.51A {Homo sapiens}
Probab=92.93 E-value=0.17 Score=51.40 Aligned_cols=53 Identities=21% Similarity=0.294 Sum_probs=31.3
Q ss_pred CcccccccCChHHHHHHHHHHHHhcChhHHhh-----cCCCCCCceEEeCCCCChHHHHH
Q 007575 328 TITFADVAGVDEAKEELEEIVEFLRSPDKYIR-----LGARPPRGVLLVGLPGTGKTLLA 382 (597)
Q Consensus 328 ~vtf~dV~G~de~k~~L~eiv~~l~~p~~~~~-----lg~~~p~gVLL~GPPGTGKT~LA 382 (597)
..+|+++.-.++..+.|.+. .+..|..++. +-...++.+++++|+|+|||+..
T Consensus 91 ~~~f~~l~l~~~l~~~l~~~--g~~~pt~iQ~~ai~~il~~~~~~~l~~a~TGsGKT~a~ 148 (300)
T 3fmo_B 91 VKSFEELRLKPQLLQGVYAM--GFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAF 148 (300)
T ss_dssp CCCSGGGTCCHHHHHHHHHT--TCCSCCHHHHHHHHHHTSSSCCCEEEECCTTSSHHHHH
T ss_pred cCCHhhcCCCHHHHHHHHHc--CCCCCCHHHHHHHHHHHcCCCCeEEEECCCCCCccHHH
Confidence 35688776666655555431 1233322222 11123578999999999999764
No 353
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19
Probab=92.91 E-value=0.36 Score=55.88 Aligned_cols=34 Identities=26% Similarity=0.260 Sum_probs=23.3
Q ss_pred CCCceEEeCCCCChHHHHHHHHHHhc---CCCeeeec
Q 007575 364 PPRGVLLVGLPGTGKTLLAKAVAGEA---EVPFISCS 397 (597)
Q Consensus 364 ~p~gVLL~GPPGTGKT~LArAIA~el---~~pfi~is 397 (597)
.|..+|+.||.|+|||..+-..+-+. +...+.+.
T Consensus 388 ~~~~~Ll~a~TGSGKTlvall~il~~l~~g~qvlvla 424 (780)
T 1gm5_A 388 KPMNRLLQGDVGSGKTVVAQLAILDNYEAGFQTAFMV 424 (780)
T ss_dssp SCCCCEEECCSSSSHHHHHHHHHHHHHHHTSCEEEEC
T ss_pred CCCcEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEe
Confidence 45679999999999998776554332 44444443
No 354
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=92.82 E-value=0.26 Score=53.12 Aligned_cols=70 Identities=30% Similarity=0.297 Sum_probs=42.5
Q ss_pred CCCceEEeCCCCChHHHHHHHHHHhc---CCCeeeechhhh-------HHHH---hh---------cc-hHHHHHHHHHH
Q 007575 364 PPRGVLLVGLPGTGKTLLAKAVAGEA---EVPFISCSASEF-------VELY---VG---------MG-ASRVRDLFARA 420 (597)
Q Consensus 364 ~p~gVLL~GPPGTGKT~LArAIA~el---~~pfi~is~sef-------~~~~---vG---------~~-e~~vr~lF~~A 420 (597)
.+..++++|++|+|||+++..+|..+ +..+..++++-+ ...+ .+ .. ....++.++.+
T Consensus 97 ~~~vi~i~G~~GsGKTT~~~~LA~~l~~~g~~Vllvd~D~~r~aa~~qL~~~~~~~gv~v~~~~~~~~p~~i~~~~l~~~ 176 (425)
T 2ffh_A 97 DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQRPAAREQLRLLGEKVGVPVLEVMDGESPESIRRRVEEKA 176 (425)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCSSCHHHHHHHHHHHHHHTCCEEECCTTCCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEeeccccCchhHHHHHHhcccCCccEEecCCCCCHHHHHHHHHHHH
Confidence 56678899999999999999999765 444444433211 1111 01 01 12235667776
Q ss_pred HhcCCeEEEEcCc
Q 007575 421 KKEAPSIIFIDEI 433 (597)
Q Consensus 421 ~~~aP~ILfIDEI 433 (597)
+.....+|+||=.
T Consensus 177 ~~~~~DvVIIDTa 189 (425)
T 2ffh_A 177 RLEARDLILVDTA 189 (425)
T ss_dssp HHTTCSEEEEECC
T ss_pred HHCCCCEEEEcCC
Confidence 5455678998854
No 355
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=92.79 E-value=0.31 Score=54.01 Aligned_cols=26 Identities=31% Similarity=0.451 Sum_probs=22.2
Q ss_pred CCCceEEeCCCCChHHHHHHHHHHhc
Q 007575 364 PPRGVLLVGLPGTGKTLLAKAVAGEA 389 (597)
Q Consensus 364 ~p~gVLL~GPPGTGKT~LArAIA~el 389 (597)
...-+-|.||.|+|||+|++++++..
T Consensus 293 ~Gei~~i~G~nGsGKSTLl~~l~Gl~ 318 (538)
T 3ozx_A 293 EGEIIGILGPNGIGKTTFARILVGEI 318 (538)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 34458899999999999999999854
No 356
>3vkw_A Replicase large subunit; alpha/beta domain, helicase, transferase; 1.90A {Tomato mosaic virus}
Probab=92.71 E-value=0.14 Score=55.50 Aligned_cols=24 Identities=33% Similarity=0.394 Sum_probs=20.0
Q ss_pred CCceEEeCCCCChHHHHHHHHHHh
Q 007575 365 PRGVLLVGLPGTGKTLLAKAVAGE 388 (597)
Q Consensus 365 p~gVLL~GPPGTGKT~LArAIA~e 388 (597)
.+-.++.|+||||||++...++..
T Consensus 161 ~~v~~I~G~aGsGKTt~I~~~~~~ 184 (446)
T 3vkw_A 161 AKVVLVDGVPGCGKTKEILSRVNF 184 (446)
T ss_dssp SEEEEEEECTTSCHHHHHHHHCCT
T ss_pred ccEEEEEcCCCCCHHHHHHHHhcc
Confidence 345789999999999999888754
No 357
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=92.64 E-value=0.059 Score=52.58 Aligned_cols=27 Identities=26% Similarity=0.341 Sum_probs=23.7
Q ss_pred CCceEEeCCCCChHHHHHHHHHHhc-CC
Q 007575 365 PRGVLLVGLPGTGKTLLAKAVAGEA-EV 391 (597)
Q Consensus 365 p~gVLL~GPPGTGKT~LArAIA~el-~~ 391 (597)
|.-|.|.|++|+|||++++.++..+ +.
T Consensus 2 ~~~i~~~G~~g~GKtt~~~~l~~~l~~~ 29 (241)
T 2ocp_A 2 PRRLSIEGNIAVGKSTFVKLLTKTYPEW 29 (241)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHHCTTS
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHcCCC
Confidence 4458899999999999999999998 44
No 358
>3dkp_A Probable ATP-dependent RNA helicase DDX52; DEAD, ADP, structural genomics, structural GEN consortium, SGC, rRNA, ATP-binding, hydrolase; HET: ADP; 2.10A {Homo sapiens}
Probab=92.60 E-value=0.51 Score=45.51 Aligned_cols=17 Identities=41% Similarity=0.524 Sum_probs=14.9
Q ss_pred CceEEeCCCCChHHHHH
Q 007575 366 RGVLLVGLPGTGKTLLA 382 (597)
Q Consensus 366 ~gVLL~GPPGTGKT~LA 382 (597)
+.+++.+|+|+|||..+
T Consensus 67 ~~~l~~a~TGsGKT~~~ 83 (245)
T 3dkp_A 67 RELLASAPTGSGKTLAF 83 (245)
T ss_dssp CCEEEECCTTSCHHHHH
T ss_pred CCEEEECCCCCcHHHHH
Confidence 46999999999999764
No 359
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=92.56 E-value=0.067 Score=54.95 Aligned_cols=26 Identities=35% Similarity=0.391 Sum_probs=22.9
Q ss_pred CCCceEEeCCCCChHHHHHHHHHHhc
Q 007575 364 PPRGVLLVGLPGTGKTLLAKAVAGEA 389 (597)
Q Consensus 364 ~p~gVLL~GPPGTGKT~LArAIA~el 389 (597)
.+.-+.|.||+|+|||++++.+|+.+
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lagll 126 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGRYY 126 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHH
Confidence 45678899999999999999999865
No 360
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=92.54 E-value=0.052 Score=59.13 Aligned_cols=54 Identities=19% Similarity=0.361 Sum_probs=46.7
Q ss_pred eeEEEecCCCCCchhHHH--HHhCCceecCCCCC---------------------------CcCcHHHHHHHHHHHHHHH
Q 007575 242 RIVYTTTRPSDIKTPYEK--MLENQVEFGSPDKR---------------------------SGGFLNSALIALFYVAVLA 292 (597)
Q Consensus 242 ~~~~~t~~~~~~~~~~~~--~~~~~v~~~~~~~~---------------------------~~~~~~~~l~~l~~~~~l~ 292 (597)
.++.+||+|+.+|+++.+ +|++.++|+.|+.. +.||.+++|..+|..|++.
T Consensus 350 iVIaATNrpd~LDpALlRpGRFD~~I~i~lPd~~~R~~Ilk~~l~~~~l~~dvdl~~LA~~T~GfSGADI~~l~~eAa~~ 429 (467)
T 4b4t_H 350 KVMFATNRPNTLDPALLRPGRIDRKVEFSLPDLEGRANIFRIHSKSMSVERGIRWELISRLCPNSTGAELRSVCTEAGMF 429 (467)
T ss_dssp EEEEECSCTTSBCHHHHSTTTCCEEECCCCCCHHHHHHHHHHHHTTSCBCSSCCHHHHHHHCCSCCHHHHHHHHHHHHHH
T ss_pred EEEeCCCCcccCChhhhccccccEEEEeCCcCHHHHHHHHHHHhcCCCCCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHH
Confidence 468999999999999874 89999999888743 6899999999999999988
Q ss_pred HHH
Q 007575 293 GLL 295 (597)
Q Consensus 293 ~~~ 295 (597)
++.
T Consensus 430 Air 432 (467)
T 4b4t_H 430 AIR 432 (467)
T ss_dssp HHH
T ss_pred HHH
Confidence 865
No 361
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=92.52 E-value=0.064 Score=55.29 Aligned_cols=27 Identities=19% Similarity=0.162 Sum_probs=23.1
Q ss_pred CCCCceEEeCCCCChHHHHHHHHHHhc
Q 007575 363 RPPRGVLLVGLPGTGKTLLAKAVAGEA 389 (597)
Q Consensus 363 ~~p~gVLL~GPPGTGKT~LArAIA~el 389 (597)
..+.-+.|.||+|+|||||++.|++.+
T Consensus 88 ~~g~ivgI~G~sGsGKSTL~~~L~gll 114 (312)
T 3aez_A 88 PVPFIIGVAGSVAVGKSTTARVLQALL 114 (312)
T ss_dssp CCCEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCchHHHHHHHHHhhc
Confidence 345567899999999999999999975
No 362
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=92.50 E-value=0.14 Score=57.07 Aligned_cols=40 Identities=25% Similarity=0.260 Sum_probs=30.4
Q ss_pred CCCceEEeCCCCChHHHHHHHHHHhcC----CCeeeechhhhHH
Q 007575 364 PPRGVLLVGLPGTGKTLLAKAVAGEAE----VPFISCSASEFVE 403 (597)
Q Consensus 364 ~p~gVLL~GPPGTGKT~LArAIA~el~----~pfi~is~sef~~ 403 (597)
.+..+.|.|++|+|||+|++++++.++ ..+..+++..+..
T Consensus 368 ~G~iI~LiG~sGSGKSTLar~La~~L~~~~G~~i~~lDgD~~~~ 411 (552)
T 3cr8_A 368 QGFTVFFTGLSGAGKSTLARALAARLMEMGGRCVTLLDGDIVRR 411 (552)
T ss_dssp SCEEEEEEESSCHHHHHHHHHHHHHHHTTCSSCEEEESSHHHHH
T ss_pred cceEEEEECCCCChHHHHHHHHHHhhcccCCceEEEECCcHHHH
Confidence 345688999999999999999999874 3454566665543
No 363
>4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A*
Probab=92.42 E-value=0.76 Score=49.40 Aligned_cols=23 Identities=22% Similarity=0.486 Sum_probs=18.3
Q ss_pred CceEEeCCCCChHHHHHHHHHHh
Q 007575 366 RGVLLVGLPGTGKTLLAKAVAGE 388 (597)
Q Consensus 366 ~gVLL~GPPGTGKT~LArAIA~e 388 (597)
+.+++.+|+|+|||..+-..+-+
T Consensus 23 ~~~l~~~~tGsGKT~~~~~~~~~ 45 (556)
T 4a2p_A 23 KNALICAPTGSGKTFVSILICEH 45 (556)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHH
T ss_pred CCEEEEcCCCChHHHHHHHHHHH
Confidence 46999999999999887655543
No 364
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=92.40 E-value=0.069 Score=49.30 Aligned_cols=24 Identities=25% Similarity=0.275 Sum_probs=21.4
Q ss_pred ceEEeCCCCChHHHHHHHHHHhcC
Q 007575 367 GVLLVGLPGTGKTLLAKAVAGEAE 390 (597)
Q Consensus 367 gVLL~GPPGTGKT~LArAIA~el~ 390 (597)
-.+|+||.|+|||+|++||+.-++
T Consensus 28 ~~~i~G~NGsGKStll~ai~~~l~ 51 (182)
T 3kta_A 28 FTAIVGANGSGKSNIGDAILFVLG 51 (182)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHTT
T ss_pred cEEEECCCCCCHHHHHHHHHHHHc
Confidence 568999999999999999988764
No 365
>2orv_A Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2'deoxythymidil))tetraphosphate, transferase; HET: 4TA; 2.30A {Homo sapiens} SCOP: c.37.1.24 g.39.1.14
Probab=92.39 E-value=0.26 Score=48.91 Aligned_cols=68 Identities=19% Similarity=0.100 Sum_probs=35.7
Q ss_pred CceEEeCCCCChHHHHHHHHHHh---cCCCeeeechh-------hhHHHHhhcc-----hHHHHHHHHHHHhcCCeEEEE
Q 007575 366 RGVLLVGLPGTGKTLLAKAVAGE---AEVPFISCSAS-------EFVELYVGMG-----ASRVRDLFARAKKEAPSIIFI 430 (597)
Q Consensus 366 ~gVLL~GPPGTGKT~LArAIA~e---l~~pfi~is~s-------ef~~~~vG~~-----e~~vr~lF~~A~~~aP~ILfI 430 (597)
.-.+++||.|+|||+.+-..+.. .+..++.+... .+.+.. |.. .....++++.+ ....+|+|
T Consensus 20 ~l~v~~G~MgsGKTT~lL~~~~r~~~~g~kvli~kp~~D~Ryg~~i~sr~-G~~~~a~~i~~~~di~~~~--~~~dvViI 96 (234)
T 2orv_A 20 QIQVILGPMFSGKSTELMRRVRRFQIAQYKCLVIKYAKDTRYSSSFCTHD-RNTMEALPACLLRDVAQEA--LGVAVIGI 96 (234)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHHHTTTCCEEEEEETTCCCC------------CEEEEESSGGGGHHHH--TTCSEEEE
T ss_pred EEEEEECCCCCcHHHHHHHHHHHHHHCCCeEEEEeecCCccchHHHHhhc-CCeeEEEecCCHHHHHHHh--ccCCEEEE
Confidence 34678899999999666555443 35444444311 111111 110 01112345554 33569999
Q ss_pred cCcchh
Q 007575 431 DEIDAV 436 (597)
Q Consensus 431 DEIDaL 436 (597)
||++-+
T Consensus 97 DEaQF~ 102 (234)
T 2orv_A 97 DEGQFF 102 (234)
T ss_dssp SSGGGC
T ss_pred Echhhh
Confidence 999876
No 366
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=92.29 E-value=0.06 Score=53.05 Aligned_cols=27 Identities=19% Similarity=0.303 Sum_probs=22.8
Q ss_pred CCCCceEEeCCCCChHHHHHHHHHHhc
Q 007575 363 RPPRGVLLVGLPGTGKTLLAKAVAGEA 389 (597)
Q Consensus 363 ~~p~gVLL~GPPGTGKT~LArAIA~el 389 (597)
....-+.|.||+|+|||||++.+++..
T Consensus 29 ~~Ge~~~iiG~nGsGKSTLl~~l~Gl~ 55 (235)
T 3tif_A 29 KEGEFVSIMGPSGSGKSTMLNIIGCLD 55 (235)
T ss_dssp CTTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhcCC
Confidence 344458899999999999999999865
No 367
>1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A*
Probab=92.29 E-value=0.29 Score=56.57 Aligned_cols=24 Identities=25% Similarity=0.199 Sum_probs=21.0
Q ss_pred CCceEEeCCCCChHHHHHHHHHHh
Q 007575 365 PRGVLLVGLPGTGKTLLAKAVAGE 388 (597)
Q Consensus 365 p~gVLL~GPPGTGKT~LArAIA~e 388 (597)
...+.|.||.|+|||++.|.+++-
T Consensus 576 g~i~~I~GpNGsGKSTlLr~iagl 599 (765)
T 1ewq_A 576 HELVLITGPNMAGKSTFLRQTALI 599 (765)
T ss_dssp SCEEEEESCSSSSHHHHHHHHHHH
T ss_pred CcEEEEECCCCCChHHHHHHHHhh
Confidence 346889999999999999999863
No 368
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=92.29 E-value=0.38 Score=58.67 Aligned_cols=28 Identities=25% Similarity=0.313 Sum_probs=23.7
Q ss_pred CCCCCceEEeCCCCChHHHHHHHHHHhc
Q 007575 362 ARPPRGVLLVGLPGTGKTLLAKAVAGEA 389 (597)
Q Consensus 362 ~~~p~gVLL~GPPGTGKT~LArAIA~el 389 (597)
.++..-+-|+||+|+|||+|++.+++.+
T Consensus 413 i~~G~~~~ivG~sGsGKSTl~~ll~g~~ 440 (1284)
T 3g5u_A 413 VKSGQTVALVGNSGCGKSTTVQLMQRLY 440 (1284)
T ss_dssp ECTTCEEEEECCSSSSHHHHHHHTTTSS
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 3455568899999999999999999865
No 369
>2gks_A Bifunctional SAT/APS kinase; transferase, sulfurylase; HET: ADP; 2.31A {Aquifex aeolicus}
Probab=92.26 E-value=0.24 Score=55.02 Aligned_cols=39 Identities=23% Similarity=0.193 Sum_probs=31.1
Q ss_pred CCceEEeCCCCChHHHHHHHHHHhc---CCCeeeechhhhHH
Q 007575 365 PRGVLLVGLPGTGKTLLAKAVAGEA---EVPFISCSASEFVE 403 (597)
Q Consensus 365 p~gVLL~GPPGTGKT~LArAIA~el---~~pfi~is~sef~~ 403 (597)
+..|+|+|++|+|||++|+.++..+ |.++..++...+..
T Consensus 372 ~~~I~l~G~~GsGKSTia~~La~~L~~~G~~~~~ld~D~ir~ 413 (546)
T 2gks_A 372 GFCVWLTGLPCAGKSTIAEILATMLQARGRKVTLLDGDVVRT 413 (546)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEECHHHHHH
T ss_pred ceEEEccCCCCCCHHHHHHHHHHHhhhcCCeEEEECchHhhh
Confidence 4568999999999999999999876 45777777665543
No 370
>2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal helicase, DNA repair,, DNA binding protein/DNA complex; 3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2 c.37.1.19 c.37.1.19 PDB: 2p6u_A
Probab=92.25 E-value=0.13 Score=58.19 Aligned_cols=21 Identities=38% Similarity=0.479 Sum_probs=17.4
Q ss_pred CCceEEeCCCCChHHHHHHHH
Q 007575 365 PRGVLLVGLPGTGKTLLAKAV 385 (597)
Q Consensus 365 p~gVLL~GPPGTGKT~LArAI 385 (597)
..++++.||+|+|||+.+-..
T Consensus 40 ~~~~lv~apTGsGKT~~~~l~ 60 (702)
T 2p6r_A 40 GKNLLLAMPTAAGKTLLAEMA 60 (702)
T ss_dssp CSCEEEECSSHHHHHHHHHHH
T ss_pred CCcEEEEcCCccHHHHHHHHH
Confidence 357999999999999988433
No 371
>3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus}
Probab=92.13 E-value=1.1 Score=47.95 Aligned_cols=23 Identities=17% Similarity=0.439 Sum_probs=18.5
Q ss_pred CceEEeCCCCChHHHHHHHHHHh
Q 007575 366 RGVLLVGLPGTGKTLLAKAVAGE 388 (597)
Q Consensus 366 ~gVLL~GPPGTGKT~LArAIA~e 388 (597)
+.+++.+|+|+|||..+-..+-+
T Consensus 20 ~~~l~~~~tGsGKT~~~~~~~~~ 42 (555)
T 3tbk_A 20 KNTIICAPTGCGKTFVSLLICEH 42 (555)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHH
T ss_pred CCEEEEeCCCChHHHHHHHHHHH
Confidence 46999999999999886666543
No 372
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=92.06 E-value=0.08 Score=49.96 Aligned_cols=25 Identities=28% Similarity=0.231 Sum_probs=21.7
Q ss_pred CCceEEeCCCCChHHHHHHHHHHhc
Q 007575 365 PRGVLLVGLPGTGKTLLAKAVAGEA 389 (597)
Q Consensus 365 p~gVLL~GPPGTGKT~LArAIA~el 389 (597)
.+-+.|.|++|+|||+++..++.++
T Consensus 4 ~~~i~i~G~sGsGKTTl~~~L~~~l 28 (169)
T 1xjc_A 4 MNVWQVVGYKHSGKTTLMEKWVAAA 28 (169)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHHhh
Confidence 3468899999999999999998864
No 373
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=92.02 E-value=0.059 Score=52.65 Aligned_cols=26 Identities=23% Similarity=0.243 Sum_probs=22.2
Q ss_pred CCCceEEeCCCCChHHHHHHHHHHhc
Q 007575 364 PPRGVLLVGLPGTGKTLLAKAVAGEA 389 (597)
Q Consensus 364 ~p~gVLL~GPPGTGKT~LArAIA~el 389 (597)
...-+.|.||+|+|||+|++.+++..
T Consensus 29 ~Ge~~~iiG~nGsGKSTLl~~l~Gl~ 54 (224)
T 2pcj_A 29 KGEFVSIIGASGSGKSTLLYILGLLD 54 (224)
T ss_dssp TTCEEEEEECTTSCHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 34457899999999999999999864
No 374
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=92.01 E-value=0.077 Score=52.54 Aligned_cols=24 Identities=29% Similarity=0.533 Sum_probs=21.5
Q ss_pred CceEEeCCCCChHHHHHHHHHHhc
Q 007575 366 RGVLLVGLPGTGKTLLAKAVAGEA 389 (597)
Q Consensus 366 ~gVLL~GPPGTGKT~LArAIA~el 389 (597)
.-+.|.||+|+|||+|.+.+++..
T Consensus 25 e~~~liG~nGsGKSTLl~~l~Gl~ 48 (240)
T 2onk_A 25 DYCVLLGPTGAGKSVFLELIAGIV 48 (240)
T ss_dssp SEEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEEECCCCCCHHHHHHHHhCCC
Confidence 568899999999999999999854
No 375
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=91.98 E-value=0.054 Score=52.50 Aligned_cols=22 Identities=45% Similarity=0.452 Sum_probs=20.1
Q ss_pred ceEEeCCCCChHHHHHHHHHHh
Q 007575 367 GVLLVGLPGTGKTLLAKAVAGE 388 (597)
Q Consensus 367 gVLL~GPPGTGKT~LArAIA~e 388 (597)
-+.|.||+|+|||+|++.+++.
T Consensus 24 ~~~liG~nGsGKSTLl~~l~Gl 45 (208)
T 3b85_A 24 IVFGLGPAGSGKTYLAMAKAVQ 45 (208)
T ss_dssp EEEEECCTTSSTTHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4789999999999999999975
No 376
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=91.96 E-value=0.08 Score=55.25 Aligned_cols=28 Identities=21% Similarity=0.375 Sum_probs=24.2
Q ss_pred CCceEEeCCCCChHHHHHHHHHHhcCCC
Q 007575 365 PRGVLLVGLPGTGKTLLAKAVAGEAEVP 392 (597)
Q Consensus 365 p~gVLL~GPPGTGKT~LArAIA~el~~p 392 (597)
..-+.|.||+|+|||+|++.+++.+...
T Consensus 170 g~k~~IvG~nGsGKSTLlk~L~gl~~~~ 197 (365)
T 1lw7_A 170 AKTVAILGGESSGKSVLVNKLAAVFNTT 197 (365)
T ss_dssp CEEEEEECCTTSHHHHHHHHHHHHTTCE
T ss_pred hCeEEEECCCCCCHHHHHHHHHHHhCCC
Confidence 4468999999999999999999987654
No 377
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=91.91 E-value=0.081 Score=47.21 Aligned_cols=22 Identities=50% Similarity=0.839 Sum_probs=19.6
Q ss_pred ceEEeCCCCChHHHHHHHHHHh
Q 007575 367 GVLLVGLPGTGKTLLAKAVAGE 388 (597)
Q Consensus 367 gVLL~GPPGTGKT~LArAIA~e 388 (597)
.|+|.|++|+|||+|.+++.+.
T Consensus 4 ki~~vG~~~~GKSsli~~l~~~ 25 (166)
T 3q72_A 4 KVLLLGAPGVGKSALARIFGGV 25 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHCCC
T ss_pred EEEEECCCCCCHHHHHHHHcCc
Confidence 4899999999999999999653
No 378
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=91.86 E-value=0.07 Score=50.96 Aligned_cols=28 Identities=29% Similarity=0.392 Sum_probs=23.4
Q ss_pred CCceEEeCCCCChHHHHHHHHHHhcCCCe
Q 007575 365 PRGVLLVGLPGTGKTLLAKAVAGEAEVPF 393 (597)
Q Consensus 365 p~gVLL~GPPGTGKT~LArAIA~el~~pf 393 (597)
..++||.|++|+|||++|.++... |..+
T Consensus 16 G~gvli~G~SGaGKStlal~L~~r-G~~l 43 (181)
T 3tqf_A 16 KMGVLITGEANIGKSELSLALIDR-GHQL 43 (181)
T ss_dssp TEEEEEEESSSSSHHHHHHHHHHT-TCEE
T ss_pred CEEEEEEcCCCCCHHHHHHHHHHc-CCeE
Confidence 468999999999999999999875 4333
No 379
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=91.84 E-value=0.081 Score=49.50 Aligned_cols=22 Identities=32% Similarity=0.486 Sum_probs=20.5
Q ss_pred ceEEeCCCCChHHHHHHHHHHh
Q 007575 367 GVLLVGLPGTGKTLLAKAVAGE 388 (597)
Q Consensus 367 gVLL~GPPGTGKT~LArAIA~e 388 (597)
.+.|.|++|+|||+|.+.+++.
T Consensus 7 kv~lvG~~g~GKSTLl~~l~~~ 28 (199)
T 2f9l_A 7 KVVLIGDSGVGKSNLLSRFTRN 28 (199)
T ss_dssp EEEEESSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHhcC
Confidence 4899999999999999999986
No 380
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=91.83 E-value=0.094 Score=49.51 Aligned_cols=26 Identities=19% Similarity=0.360 Sum_probs=22.6
Q ss_pred CCCceEEeCCCCChHHHHHHHHHHhc
Q 007575 364 PPRGVLLVGLPGTGKTLLAKAVAGEA 389 (597)
Q Consensus 364 ~p~gVLL~GPPGTGKT~LArAIA~el 389 (597)
....|+|.|++|+|||+|+.++.+..
T Consensus 11 ~~~~i~~~G~~g~GKTsl~~~l~~~~ 36 (218)
T 1nrj_B 11 YQPSIIIAGPQNSGKTSLLTLLTTDS 36 (218)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHHSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 34579999999999999999998864
No 381
>2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B*
Probab=91.83 E-value=0.5 Score=56.28 Aligned_cols=21 Identities=29% Similarity=0.325 Sum_probs=19.3
Q ss_pred CCceEEeCCCCChHHHHHHHH
Q 007575 365 PRGVLLVGLPGTGKTLLAKAV 385 (597)
Q Consensus 365 p~gVLL~GPPGTGKT~LArAI 385 (597)
...++|+||.|+|||++.|.+
T Consensus 789 g~i~~ItGpNgsGKSTlLr~i 809 (1022)
T 2o8b_B 789 AYCVLVTGPNMGGKSTLMRQA 809 (1022)
T ss_dssp CCEEEEECCTTSSHHHHHHHH
T ss_pred CcEEEEECCCCCChHHHHHHH
Confidence 457899999999999999999
No 382
>3h1t_A Type I site-specific restriction-modification system, R (restriction) subunit; hydrolase, restriction enzyme HSDR, ATP-binding; 2.30A {Vibrio vulnificus}
Probab=91.81 E-value=0.21 Score=55.21 Aligned_cols=44 Identities=18% Similarity=0.169 Sum_probs=29.6
Q ss_pred cCChHHHHHHHHHHHHhcChhHHhhcCCCCCCceEEeCCCCChHHHHHHHHHHh
Q 007575 335 AGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGE 388 (597)
Q Consensus 335 ~G~de~k~~L~eiv~~l~~p~~~~~lg~~~p~gVLL~GPPGTGKT~LArAIA~e 388 (597)
.-.+...+.+..+++.+.. ..+.+|+++|+|+|||..+-.++..
T Consensus 178 ~lr~~Q~~ai~~~~~~~~~----------~~~~~ll~~~TGsGKT~~~~~~~~~ 221 (590)
T 3h1t_A 178 SPRYYQQIAINRAVQSVLQ----------GKKRSLITMATGTGKTVVAFQISWK 221 (590)
T ss_dssp -CCHHHHHHHHHHHHHHHT----------TCSEEEEEECTTSCHHHHHHHHHHH
T ss_pred CchHHHHHHHHHHHHHHhc----------CCCceEEEecCCCChHHHHHHHHHH
Confidence 3445556666666654432 1246899999999999998777654
No 383
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=91.80 E-value=0.36 Score=46.96 Aligned_cols=26 Identities=31% Similarity=0.373 Sum_probs=21.7
Q ss_pred CCCceEEeCCCCChHHHHHHHHHHhc
Q 007575 364 PPRGVLLVGLPGTGKTLLAKAVAGEA 389 (597)
Q Consensus 364 ~p~gVLL~GPPGTGKT~LArAIA~el 389 (597)
.+..+++.|.+|+|||+++..+|..+
T Consensus 13 ~~~i~~~~GkgGvGKTTl~~~La~~l 38 (262)
T 1yrb_A 13 ASMIVVFVGTAGSGKTTLTGEFGRYL 38 (262)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred ceEEEEEeCCCCCCHHHHHHHHHHHH
Confidence 34568899999999999999998554
No 384
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=91.80 E-value=0.074 Score=53.30 Aligned_cols=26 Identities=15% Similarity=0.307 Sum_probs=22.3
Q ss_pred CCCceEEeCCCCChHHHHHHHHHHhc
Q 007575 364 PPRGVLLVGLPGTGKTLLAKAVAGEA 389 (597)
Q Consensus 364 ~p~gVLL~GPPGTGKT~LArAIA~el 389 (597)
...-+.|.||+|+|||||++++++..
T Consensus 31 ~Ge~~~liG~nGsGKSTLlk~l~Gl~ 56 (262)
T 1b0u_A 31 AGDVISIIGSSGSGKSTFLRCINFLE 56 (262)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 34457899999999999999999864
No 385
>3fho_A ATP-dependent RNA helicase DBP5; mRNA export, ATPase, translation termination, binding, hydrolase, membrane, mRNA transport; 2.80A {Schizosaccharomyces pombe}
Probab=91.76 E-value=0.41 Score=52.04 Aligned_cols=19 Identities=37% Similarity=0.469 Sum_probs=16.1
Q ss_pred CCceEEeCCCCChHHHHHH
Q 007575 365 PRGVLLVGLPGTGKTLLAK 383 (597)
Q Consensus 365 p~gVLL~GPPGTGKT~LAr 383 (597)
++.+++.+|+|+|||..+-
T Consensus 158 ~~~~ll~apTGsGKT~~~~ 176 (508)
T 3fho_A 158 PRNMIGQSQSGTGKTAAFA 176 (508)
T ss_dssp CCCEEEECCSSTTSHHHHH
T ss_pred CCCEEEECCCCccHHHHHH
Confidence 4679999999999998643
No 386
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=91.65 E-value=0.092 Score=52.75 Aligned_cols=26 Identities=31% Similarity=0.551 Sum_probs=22.4
Q ss_pred CCCCceEEeCCCCChHHHHHHHHHHh
Q 007575 363 RPPRGVLLVGLPGTGKTLLAKAVAGE 388 (597)
Q Consensus 363 ~~p~gVLL~GPPGTGKT~LArAIA~e 388 (597)
....-+.|.||.|+|||+|++.+++.
T Consensus 44 ~~Ge~~~l~G~NGsGKSTLlk~l~Gl 69 (267)
T 2zu0_C 44 HPGEVHAIMGPNGSGKSTLSATLAGR 69 (267)
T ss_dssp CTTCEEEEECCTTSSHHHHHHHHHTC
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 34445889999999999999999995
No 387
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=91.65 E-value=0.43 Score=53.97 Aligned_cols=22 Identities=32% Similarity=0.454 Sum_probs=18.3
Q ss_pred CCCceEEeCCCCChHHHHHHHH
Q 007575 364 PPRGVLLVGLPGTGKTLLAKAV 385 (597)
Q Consensus 364 ~p~gVLL~GPPGTGKT~LArAI 385 (597)
...-+.|.||+|+|||+|++.+
T Consensus 347 ~Ge~vaIiGpnGsGKSTLl~~i 368 (670)
T 3ux8_A 347 LGTFVAVTGVSGSGKSTLVNEV 368 (670)
T ss_dssp TTSEEEEECSTTSSHHHHHTTT
T ss_pred CCCEEEEEeeCCCCHHHHHHHH
Confidence 4445889999999999999764
No 388
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=91.64 E-value=0.2 Score=51.99 Aligned_cols=26 Identities=27% Similarity=0.385 Sum_probs=21.9
Q ss_pred CCCceEEeCCCCChHHHHHHHHHHhc
Q 007575 364 PPRGVLLVGLPGTGKTLLAKAVAGEA 389 (597)
Q Consensus 364 ~p~gVLL~GPPGTGKT~LArAIA~el 389 (597)
...-+.|.||||+|||+|.+++++.+
T Consensus 54 ~g~~v~i~G~~GaGKSTLl~~l~g~~ 79 (337)
T 2qm8_A 54 RAIRVGITGVPGVGKSTTIDALGSLL 79 (337)
T ss_dssp CSEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhh
Confidence 34458899999999999999999754
No 389
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=91.64 E-value=0.081 Score=49.41 Aligned_cols=23 Identities=30% Similarity=0.465 Sum_probs=20.8
Q ss_pred ceEEeCCCCChHHHHHHHHHHhc
Q 007575 367 GVLLVGLPGTGKTLLAKAVAGEA 389 (597)
Q Consensus 367 gVLL~GPPGTGKT~LArAIA~el 389 (597)
-+.|.|++|+|||+|++.+++..
T Consensus 31 kv~lvG~~g~GKSTLl~~l~~~~ 53 (191)
T 1oix_A 31 KVVLIGDSGVGKSNLLSRFTRNE 53 (191)
T ss_dssp EEEEEECTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 48999999999999999999864
No 390
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=91.56 E-value=0.08 Score=47.15 Aligned_cols=23 Identities=17% Similarity=0.251 Sum_probs=20.7
Q ss_pred CceEEeCCCCChHHHHHHHHHHh
Q 007575 366 RGVLLVGLPGTGKTLLAKAVAGE 388 (597)
Q Consensus 366 ~gVLL~GPPGTGKT~LArAIA~e 388 (597)
..|++.|++|+|||+|+.++.+.
T Consensus 6 ~~i~v~G~~~~GKssl~~~l~~~ 28 (168)
T 1z2a_A 6 IKMVVVGNGAVGKSSMIQRYCKG 28 (168)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHC
T ss_pred EEEEEECcCCCCHHHHHHHHHcC
Confidence 45899999999999999999874
No 391
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=91.56 E-value=0.093 Score=46.46 Aligned_cols=22 Identities=32% Similarity=0.523 Sum_probs=20.2
Q ss_pred ceEEeCCCCChHHHHHHHHHHh
Q 007575 367 GVLLVGLPGTGKTLLAKAVAGE 388 (597)
Q Consensus 367 gVLL~GPPGTGKT~LArAIA~e 388 (597)
.|++.|++|+|||+|+.++.+.
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~ 24 (161)
T 2dyk_A 3 KVVIVGRPNVGKSSLFNRLLKK 24 (161)
T ss_dssp EEEEECCTTSSHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4899999999999999999875
No 392
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=91.56 E-value=0.073 Score=52.59 Aligned_cols=26 Identities=19% Similarity=0.262 Sum_probs=22.1
Q ss_pred CCCceEEeCCCCChHHHHHHHHHHhc
Q 007575 364 PPRGVLLVGLPGTGKTLLAKAVAGEA 389 (597)
Q Consensus 364 ~p~gVLL~GPPGTGKT~LArAIA~el 389 (597)
+..-+.|.||+|+|||+|++.+++..
T Consensus 27 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 52 (243)
T 1mv5_A 27 PNSIIAFAGPSGGGKSTIFSLLERFY 52 (243)
T ss_dssp TTEEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 34458899999999999999999853
No 393
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=91.55 E-value=0.066 Score=57.91 Aligned_cols=55 Identities=20% Similarity=0.285 Sum_probs=47.3
Q ss_pred eeEEEecCCCCCchhHH--HHHhCCceecCCCCC---------------------------CcCcHHHHHHHHHHHHHHH
Q 007575 242 RIVYTTTRPSDIKTPYE--KMLENQVEFGSPDKR---------------------------SGGFLNSALIALFYVAVLA 292 (597)
Q Consensus 242 ~~~~~t~~~~~~~~~~~--~~~~~~v~~~~~~~~---------------------------~~~~~~~~l~~l~~~~~l~ 292 (597)
.++.+||+|+.+|+++. +++++.++|+.|+.. +.||.+++|..+|..|++.
T Consensus 322 iVIaaTNrp~~LD~AllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~~~~dvdl~~lA~~t~G~sGADi~~l~~eA~~~ 401 (434)
T 4b4t_M 322 KVLAATNRVDVLDPALLRSGRLDRKIEFPLPSEDSRAQILQIHSRKMTTDDDINWQELARSTDEFNGAQLKAVTVEAGMI 401 (434)
T ss_dssp EEEEECSSCCCCCTTTCSTTSEEEEEECCCCCHHHHHHHHHHHHHHSCBCSCCCHHHHHHHCSSCCHHHHHHHHHHHHHH
T ss_pred EEEEeCCCchhcCHhHhcCCceeEEEEeCCcCHHHHHHHHHHHhcCCCCCCcCCHHHHHHhCCCCCHHHHHHHHHHHHHH
Confidence 46789999999999984 599999999888753 6899999999999999988
Q ss_pred HHHh
Q 007575 293 GLLH 296 (597)
Q Consensus 293 ~~~~ 296 (597)
++.+
T Consensus 402 a~r~ 405 (434)
T 4b4t_M 402 ALRN 405 (434)
T ss_dssp HHHH
T ss_pred HHHc
Confidence 8754
No 394
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=91.52 E-value=0.056 Score=58.39 Aligned_cols=55 Identities=15% Similarity=0.250 Sum_probs=46.7
Q ss_pred ceeEEEecCCCCCchhHH--HHHhCCceecCCCCC---------------------------CcCcHHHHHHHHHHHHHH
Q 007575 241 KRIVYTTTRPSDIKTPYE--KMLENQVEFGSPDKR---------------------------SGGFLNSALIALFYVAVL 291 (597)
Q Consensus 241 ~~~~~~t~~~~~~~~~~~--~~~~~~v~~~~~~~~---------------------------~~~~~~~~l~~l~~~~~l 291 (597)
..++.|||+|+.+|+++. ++++..++|+.|+.. +.||.+++|..+|..|++
T Consensus 322 ViVIaATNrpd~LDpALlRpGRfD~~I~v~lPd~~~R~~Il~~~l~~~~l~~dvdl~~LA~~T~GfSGADI~~l~~eA~~ 401 (437)
T 4b4t_I 322 VKVIMATNKIETLDPALIRPGRIDRKILFENPDLSTKKKILGIHTSKMNLSEDVNLETLVTTKDDLSGADIQAMCTEAGL 401 (437)
T ss_dssp EEEEEEESCSTTCCTTSSCTTTEEEEECCCCCCHHHHHHHHHHHHTTSCBCSCCCHHHHHHHCCSCCHHHHHHHHHHHHH
T ss_pred EEEEEeCCChhhcCHHHhcCCceeEEEEcCCcCHHHHHHHHHHHhcCCCCCCcCCHHHHHHhCCCCCHHHHHHHHHHHHH
Confidence 357899999999999886 489999998888743 689999999999999988
Q ss_pred HHHH
Q 007575 292 AGLL 295 (597)
Q Consensus 292 ~~~~ 295 (597)
.++.
T Consensus 402 ~Air 405 (437)
T 4b4t_I 402 LALR 405 (437)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 8864
No 395
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=91.52 E-value=0.082 Score=51.52 Aligned_cols=26 Identities=31% Similarity=0.276 Sum_probs=22.2
Q ss_pred CCCceEEeCCCCChHHHHHHHHHHhc
Q 007575 364 PPRGVLLVGLPGTGKTLLAKAVAGEA 389 (597)
Q Consensus 364 ~p~gVLL~GPPGTGKT~LArAIA~el 389 (597)
...-+.|.||.|+|||+|++++++..
T Consensus 34 ~Ge~~~iiG~NGsGKSTLlk~l~Gl~ 59 (214)
T 1sgw_A 34 KGNVVNFHGPNGIGKTTLLKTISTYL 59 (214)
T ss_dssp TTCCEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 34458899999999999999999864
No 396
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=91.51 E-value=0.082 Score=52.92 Aligned_cols=27 Identities=30% Similarity=0.315 Sum_probs=22.8
Q ss_pred CCCCceEEeCCCCChHHHHHHHHHHhc
Q 007575 363 RPPRGVLLVGLPGTGKTLLAKAVAGEA 389 (597)
Q Consensus 363 ~~p~gVLL~GPPGTGKT~LArAIA~el 389 (597)
....-+.|.||+|+|||+|++.+++..
T Consensus 44 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 70 (260)
T 2ghi_A 44 PSGTTCALVGHTGSGKSTIAKLLYRFY 70 (260)
T ss_dssp CTTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhccC
Confidence 344568899999999999999999854
No 397
>1wrb_A DJVLGB; RNA helicase, DEAD BOX, VASA, structural genomics, NPPSFA, N project on protein structural and functional analyses; 2.40A {Dugesia japonica} SCOP: c.37.1.19
Probab=91.42 E-value=0.47 Score=46.13 Aligned_cols=18 Identities=28% Similarity=0.410 Sum_probs=15.1
Q ss_pred CceEEeCCCCChHHHHHH
Q 007575 366 RGVLLVGLPGTGKTLLAK 383 (597)
Q Consensus 366 ~gVLL~GPPGTGKT~LAr 383 (597)
+.+++.+|+|+|||..+-
T Consensus 61 ~~~l~~a~TGsGKT~~~~ 78 (253)
T 1wrb_A 61 RDIMACAQTGSGKTAAFL 78 (253)
T ss_dssp CCEEEECCTTSSHHHHHH
T ss_pred CCEEEECCCCChHHHHHH
Confidence 469999999999997543
No 398
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=91.41 E-value=0.096 Score=52.01 Aligned_cols=25 Identities=36% Similarity=0.511 Sum_probs=21.7
Q ss_pred CCCceEEeCCCCChHHHHHHHHHHh
Q 007575 364 PPRGVLLVGLPGTGKTLLAKAVAGE 388 (597)
Q Consensus 364 ~p~gVLL~GPPGTGKT~LArAIA~e 388 (597)
...-+.|.||+|+|||||++.+++.
T Consensus 28 ~Ge~~~l~G~nGsGKSTLlk~l~Gl 52 (250)
T 2d2e_A 28 KGEVHALMGPNGAGKSTLGKILAGD 52 (250)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHHTC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 3445889999999999999999994
No 399
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=91.38 E-value=0.082 Score=52.73 Aligned_cols=25 Identities=28% Similarity=0.474 Sum_probs=21.5
Q ss_pred CCceEEeCCCCChHHHHHHHHHHhc
Q 007575 365 PRGVLLVGLPGTGKTLLAKAVAGEA 389 (597)
Q Consensus 365 p~gVLL~GPPGTGKT~LArAIA~el 389 (597)
..-+.|.||+|+|||||.+.+++..
T Consensus 33 Ge~~~liG~nGsGKSTLlk~l~Gl~ 57 (257)
T 1g6h_A 33 GDVTLIIGPNGSGKSTLINVITGFL 57 (257)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC
Confidence 3457899999999999999999853
No 400
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=91.37 E-value=0.071 Score=53.76 Aligned_cols=27 Identities=30% Similarity=0.383 Sum_probs=22.7
Q ss_pred CCCCceEEeCCCCChHHHHHHHHHHhc
Q 007575 363 RPPRGVLLVGLPGTGKTLLAKAVAGEA 389 (597)
Q Consensus 363 ~~p~gVLL~GPPGTGKT~LArAIA~el 389 (597)
....-+.|.||+|+|||+|++.+++..
T Consensus 43 ~~Ge~~~i~G~nGsGKSTLlk~l~Gl~ 69 (271)
T 2ixe_A 43 YPGKVTALVGPNGSGKSTVAALLQNLY 69 (271)
T ss_dssp CTTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 344568899999999999999999854
No 401
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=91.34 E-value=0.086 Score=51.66 Aligned_cols=26 Identities=31% Similarity=0.401 Sum_probs=22.4
Q ss_pred CCCceEEeCCCCChHHHHHHHHHHhc
Q 007575 364 PPRGVLLVGLPGTGKTLLAKAVAGEA 389 (597)
Q Consensus 364 ~p~gVLL~GPPGTGKT~LArAIA~el 389 (597)
...-+.|.||.|+|||+|.+.+++..
T Consensus 33 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 58 (229)
T 2pze_A 33 RGQLLAVAGSTGAGKTSLLMMIMGEL 58 (229)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 34458899999999999999999864
No 402
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=91.33 E-value=0.088 Score=52.92 Aligned_cols=27 Identities=22% Similarity=0.383 Sum_probs=22.7
Q ss_pred CCCCceEEeCCCCChHHHHHHHHHHhc
Q 007575 363 RPPRGVLLVGLPGTGKTLLAKAVAGEA 389 (597)
Q Consensus 363 ~~p~gVLL~GPPGTGKT~LArAIA~el 389 (597)
....-+.|.||+|+|||+|++.+++..
T Consensus 48 ~~Gei~~liG~NGsGKSTLlk~l~Gl~ 74 (263)
T 2olj_A 48 REGEVVVVIGPSGSGKSTFLRCLNLLE 74 (263)
T ss_dssp CTTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred cCCCEEEEEcCCCCcHHHHHHHHHcCC
Confidence 344458899999999999999999864
No 403
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=91.28 E-value=0.55 Score=51.96 Aligned_cols=23 Identities=39% Similarity=0.498 Sum_probs=20.5
Q ss_pred ceEEeCCCCChHHHHHHHHHHhc
Q 007575 367 GVLLVGLPGTGKTLLAKAVAGEA 389 (597)
Q Consensus 367 gVLL~GPPGTGKT~LArAIA~el 389 (597)
-+-|.||.|+|||||++.+++..
T Consensus 27 i~gLiGpNGaGKSTLlkiL~Gl~ 49 (538)
T 3ozx_A 27 ILGVLGKNGVGKTTVLKILAGEI 49 (538)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCcHHHHHHHHhcCC
Confidence 36799999999999999999864
No 404
>1g8f_A Sulfate adenylyltransferase; alpha-beta protein, beta-barrel, rossmann-fold, kinase fold; 1.95A {Saccharomyces cerevisiae} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1g8g_A* 1g8h_A* 1j70_A 1jec_A 1jed_A* 1jee_A*
Probab=91.23 E-value=0.1 Score=57.46 Aligned_cols=27 Identities=11% Similarity=-0.032 Sum_probs=24.2
Q ss_pred CCceEEeCCCCChHHHHHHHHHHhcCC
Q 007575 365 PRGVLLVGLPGTGKTLLAKAVAGEAEV 391 (597)
Q Consensus 365 p~gVLL~GPPGTGKT~LArAIA~el~~ 391 (597)
+..|+|.|.+|+|||++|+++|.+++.
T Consensus 395 ~~~I~l~GlsGsGKSTIa~~La~~L~~ 421 (511)
T 1g8f_A 395 GFSIVLGNSLTVSREQLSIALLSTFLQ 421 (511)
T ss_dssp CEEEEECTTCCSCHHHHHHHHHHHHTT
T ss_pred ceEEEecccCCCCHHHHHHHHHHHHHH
Confidence 356899999999999999999999874
No 405
>3l9o_A ATP-dependent RNA helicase DOB1; REC-A fold, winged-helix-turn-helix, antiparallel-coiled-COI domain, ATP-binding, helicase, hydrolase; 3.39A {Saccharomyces cerevisiae}
Probab=91.19 E-value=0.34 Score=58.16 Aligned_cols=23 Identities=26% Similarity=0.400 Sum_probs=18.4
Q ss_pred CceEEeCCCCChHHHHHHHHHHh
Q 007575 366 RGVLLVGLPGTGKTLLAKAVAGE 388 (597)
Q Consensus 366 ~gVLL~GPPGTGKT~LArAIA~e 388 (597)
+.+|++||+|+|||+.+-..+-+
T Consensus 200 ~dvLV~ApTGSGKTlva~l~i~~ 222 (1108)
T 3l9o_A 200 ESVLVSAHTSAGKTVVAEYAIAQ 222 (1108)
T ss_dssp CCEEEECCSSSHHHHHHHHHHHH
T ss_pred CCEEEECCCCCChHHHHHHHHHH
Confidence 46999999999999887655443
No 406
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=91.15 E-value=0.09 Score=51.88 Aligned_cols=26 Identities=38% Similarity=0.460 Sum_probs=22.1
Q ss_pred CCCceEEeCCCCChHHHHHHHHHHhc
Q 007575 364 PPRGVLLVGLPGTGKTLLAKAVAGEA 389 (597)
Q Consensus 364 ~p~gVLL~GPPGTGKT~LArAIA~el 389 (597)
...-+.|.||.|+|||||.+.+++..
T Consensus 31 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 56 (240)
T 1ji0_A 31 RGQIVTLIGANGAGKTTTLSAIAGLV 56 (240)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 34458899999999999999999864
No 407
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=91.13 E-value=0.09 Score=52.20 Aligned_cols=26 Identities=27% Similarity=0.328 Sum_probs=22.1
Q ss_pred CCCceEEeCCCCChHHHHHHHHHHhc
Q 007575 364 PPRGVLLVGLPGTGKTLLAKAVAGEA 389 (597)
Q Consensus 364 ~p~gVLL~GPPGTGKT~LArAIA~el 389 (597)
...-+.|.||+|+|||+|++.+++..
T Consensus 34 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 59 (247)
T 2ff7_A 34 QGEVIGIVGRSGSGKSTLTKLIQRFY 59 (247)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 34458899999999999999999854
No 408
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=91.12 E-value=0.15 Score=48.22 Aligned_cols=24 Identities=33% Similarity=0.450 Sum_probs=21.7
Q ss_pred CceEEeCCCCChHHHHHHHHHHhc
Q 007575 366 RGVLLVGLPGTGKTLLAKAVAGEA 389 (597)
Q Consensus 366 ~gVLL~GPPGTGKT~LArAIA~el 389 (597)
..++|.|++|+|||+|+.+++..+
T Consensus 31 ~~i~i~G~~g~GKTTl~~~l~~~~ 54 (221)
T 2wsm_A 31 VAVNIMGAIGSGKTLLIERTIERI 54 (221)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHh
Confidence 468999999999999999999875
No 409
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=91.12 E-value=0.14 Score=49.68 Aligned_cols=31 Identities=23% Similarity=0.136 Sum_probs=24.6
Q ss_pred CceEEeCCCCChHHHHHHHHHHhc---CCCeeee
Q 007575 366 RGVLLVGLPGTGKTLLAKAVAGEA---EVPFISC 396 (597)
Q Consensus 366 ~gVLL~GPPGTGKT~LArAIA~el---~~pfi~i 396 (597)
.-|.|.|++|+|||++++.++..+ +.+++..
T Consensus 7 ~~i~~eG~~gsGKsT~~~~l~~~l~~~~~~v~~~ 40 (213)
T 4edh_A 7 LFVTLEGPEGAGKSTNRDYLAERLRERGIEVQLT 40 (213)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEE
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHHHHcCCCcccc
Confidence 347788999999999999998876 4555444
No 410
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=91.10 E-value=0.091 Score=52.92 Aligned_cols=23 Identities=26% Similarity=0.524 Sum_probs=20.8
Q ss_pred ceEEeCCCCChHHHHHHHHHHhc
Q 007575 367 GVLLVGLPGTGKTLLAKAVAGEA 389 (597)
Q Consensus 367 gVLL~GPPGTGKT~LArAIA~el 389 (597)
.+.|.||+|+|||+|.+.+++..
T Consensus 4 ~v~lvG~nGaGKSTLln~L~g~~ 26 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNTLFKSQ 26 (270)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 47899999999999999999854
No 411
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=91.10 E-value=0.095 Score=52.58 Aligned_cols=27 Identities=33% Similarity=0.475 Sum_probs=22.4
Q ss_pred CCCCceEEeCCCCChHHHHHHHHHHhc
Q 007575 363 RPPRGVLLVGLPGTGKTLLAKAVAGEA 389 (597)
Q Consensus 363 ~~p~gVLL~GPPGTGKT~LArAIA~el 389 (597)
....-+.|.||.|+|||+|++.+++-.
T Consensus 31 ~~Ge~~~liG~nGsGKSTLl~~i~Gl~ 57 (266)
T 2yz2_A 31 NEGECLLVAGNTGSGKSTLLQIVAGLI 57 (266)
T ss_dssp CTTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhCCC
Confidence 344458899999999999999999853
No 412
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=91.08 E-value=0.097 Score=52.37 Aligned_cols=26 Identities=23% Similarity=0.221 Sum_probs=22.2
Q ss_pred CCCceEEeCCCCChHHHHHHHHHHhc
Q 007575 364 PPRGVLLVGLPGTGKTLLAKAVAGEA 389 (597)
Q Consensus 364 ~p~gVLL~GPPGTGKT~LArAIA~el 389 (597)
...-+.|.||.|+|||||.+.+++..
T Consensus 40 ~Gei~~l~G~NGsGKSTLlk~l~Gl~ 65 (256)
T 1vpl_A 40 EGEIFGLIGPNGAGKTTTLRIISTLI 65 (256)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCcEEEEECCCCCCHHHHHHHHhcCC
Confidence 44458899999999999999999854
No 413
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=91.00 E-value=0.096 Score=52.20 Aligned_cols=26 Identities=35% Similarity=0.431 Sum_probs=22.4
Q ss_pred CCCceEEeCCCCChHHHHHHHHHHhc
Q 007575 364 PPRGVLLVGLPGTGKTLLAKAVAGEA 389 (597)
Q Consensus 364 ~p~gVLL~GPPGTGKT~LArAIA~el 389 (597)
...-+.|.||.|+|||+|.+.+++..
T Consensus 25 ~Ge~~~liG~NGsGKSTLlk~l~Gl~ 50 (249)
T 2qi9_C 25 AGEILHLVGPNGAGKSTLLARMAGMT 50 (249)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCCC
Confidence 34458899999999999999999865
No 414
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=90.99 E-value=0.12 Score=45.74 Aligned_cols=22 Identities=27% Similarity=0.430 Sum_probs=20.1
Q ss_pred ceEEeCCCCChHHHHHHHHHHh
Q 007575 367 GVLLVGLPGTGKTLLAKAVAGE 388 (597)
Q Consensus 367 gVLL~GPPGTGKT~LArAIA~e 388 (597)
.|+|.|++|+|||+|+.++.+.
T Consensus 5 ~i~v~G~~~~GKSsli~~l~~~ 26 (167)
T 1kao_A 5 KVVVLGSGGVGKSALTVQFVTG 26 (167)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5899999999999999999864
No 415
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=90.99 E-value=0.14 Score=46.17 Aligned_cols=25 Identities=32% Similarity=0.397 Sum_probs=21.7
Q ss_pred CCCceEEeCCCCChHHHHHHHHHHh
Q 007575 364 PPRGVLLVGLPGTGKTLLAKAVAGE 388 (597)
Q Consensus 364 ~p~gVLL~GPPGTGKT~LArAIA~e 388 (597)
.+..|+|.|++|+|||+|+.++.+.
T Consensus 7 ~~~~i~v~G~~~~GKssl~~~l~~~ 31 (178)
T 2lkc_A 7 RPPVVTIMGHVDHGKTTLLDAIRHS 31 (178)
T ss_dssp CCCEEEEESCTTTTHHHHHHHHHTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 3456999999999999999999864
No 416
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=90.99 E-value=0.07 Score=50.16 Aligned_cols=25 Identities=24% Similarity=0.215 Sum_probs=22.0
Q ss_pred CceEEeCCCCChHHHHHHHHHHhcC
Q 007575 366 RGVLLVGLPGTGKTLLAKAVAGEAE 390 (597)
Q Consensus 366 ~gVLL~GPPGTGKT~LArAIA~el~ 390 (597)
+.+.|+||+|+|||+|++.+++.+.
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~~~ 27 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPILR 27 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhh
Confidence 3578999999999999999998763
No 417
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=90.96 E-value=0.097 Score=53.00 Aligned_cols=25 Identities=24% Similarity=0.298 Sum_probs=21.6
Q ss_pred CCceEEeCCCCChHHHHHHHHHHhc
Q 007575 365 PRGVLLVGLPGTGKTLLAKAVAGEA 389 (597)
Q Consensus 365 p~gVLL~GPPGTGKT~LArAIA~el 389 (597)
..-+.|.||+|+|||||++++++..
T Consensus 34 Ge~~~iiGpnGsGKSTLl~~l~Gl~ 58 (275)
T 3gfo_A 34 GEVTAILGGNGVGKSTLFQNFNGIL 58 (275)
T ss_dssp TSEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCCHHHHHHHHHcCC
Confidence 3458899999999999999999854
No 418
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=90.96 E-value=0.11 Score=51.54 Aligned_cols=26 Identities=23% Similarity=0.399 Sum_probs=22.5
Q ss_pred CCCceEEeCCCCChHHHHHHHHHHhc
Q 007575 364 PPRGVLLVGLPGTGKTLLAKAVAGEA 389 (597)
Q Consensus 364 ~p~gVLL~GPPGTGKT~LArAIA~el 389 (597)
.+.-|.|.|++|+|||++++.++..+
T Consensus 26 ~~~~i~~eG~~GsGKsT~~~~l~~~l 51 (236)
T 3lv8_A 26 NAKFIVIEGLEGAGKSTAIQVVVETL 51 (236)
T ss_dssp CCCEEEEEESTTSCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 35568899999999999999998876
No 419
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=90.93 E-value=0.11 Score=45.91 Aligned_cols=23 Identities=26% Similarity=0.445 Sum_probs=20.7
Q ss_pred ceEEeCCCCChHHHHHHHHHHhc
Q 007575 367 GVLLVGLPGTGKTLLAKAVAGEA 389 (597)
Q Consensus 367 gVLL~GPPGTGKT~LArAIA~el 389 (597)
.|++.|++|+|||+|+.++.+..
T Consensus 5 ~i~v~G~~~~GKssl~~~l~~~~ 27 (166)
T 2ce2_X 5 KLVVVGAGGVGKSALTIQLIQNH 27 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHhCc
Confidence 58999999999999999998753
No 420
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=90.93 E-value=0.087 Score=55.56 Aligned_cols=25 Identities=32% Similarity=0.531 Sum_probs=21.5
Q ss_pred CCceEEeCCCCChHHHHHHHHHHhc
Q 007575 365 PRGVLLVGLPGTGKTLLAKAVAGEA 389 (597)
Q Consensus 365 p~gVLL~GPPGTGKT~LArAIA~el 389 (597)
..-+.|.||+|+|||+|.++||+-.
T Consensus 30 Ge~~~llGpsGsGKSTLLr~iaGl~ 54 (359)
T 3fvq_A 30 GEILFIIGASGCGKTTLLRCLAGFE 54 (359)
T ss_dssp TCEEEEEESTTSSHHHHHHHHHTSS
T ss_pred CCEEEEECCCCchHHHHHHHHhcCC
Confidence 3457899999999999999999853
No 421
>2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural GE consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens}
Probab=90.91 E-value=1.4 Score=45.37 Aligned_cols=53 Identities=19% Similarity=0.215 Sum_probs=30.3
Q ss_pred CcccccccCChHHHHHHHHHHHHhcChhHHhhcC---CCCCCceEEeCCCCChHHHHH
Q 007575 328 TITFADVAGVDEAKEELEEIVEFLRSPDKYIRLG---ARPPRGVLLVGLPGTGKTLLA 382 (597)
Q Consensus 328 ~vtf~dV~G~de~k~~L~eiv~~l~~p~~~~~lg---~~~p~gVLL~GPPGTGKT~LA 382 (597)
..+|+++.-.+...+.|... .+..+..++... ....+.+++.+|+|+|||+.+
T Consensus 14 ~~~f~~~~l~~~l~~~l~~~--~~~~~~~~Q~~~i~~i~~~~~~lv~a~TGsGKT~~~ 69 (417)
T 2i4i_A 14 IESFSDVEMGEIIMGNIELT--RYTRPTPVQKHAIPIIKEKRDLMACAQTGSGKTAAF 69 (417)
T ss_dssp CSSGGGSCCCHHHHHHHHHH--TCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHH
T ss_pred cCCHhhCCCCHHHHHHHHHC--CCCCCCHHHHHHHHHHccCCCEEEEcCCCCHHHHHH
Confidence 35688875555555555432 122333222211 112467999999999999743
No 422
>2gk6_A Regulator of nonsense transcripts 1; UPF1, helicase, NMD, hydrolase; HET: ADP; 2.40A {Homo sapiens} PDB: 2gjk_A* 2gk7_A 2xzo_A* 2xzp_A
Probab=90.91 E-value=0.097 Score=58.85 Aligned_cols=22 Identities=36% Similarity=0.525 Sum_probs=18.0
Q ss_pred ceEEeCCCCChHHHHHHHHHHh
Q 007575 367 GVLLVGLPGTGKTLLAKAVAGE 388 (597)
Q Consensus 367 gVLL~GPPGTGKT~LArAIA~e 388 (597)
.+++.||||||||+++..++..
T Consensus 197 ~~li~GppGTGKT~~~~~~i~~ 218 (624)
T 2gk6_A 197 LSLIQGPPGTGKTVTSATIVYH 218 (624)
T ss_dssp EEEEECCTTSCHHHHHHHHHHH
T ss_pred CeEEECCCCCCHHHHHHHHHHH
Confidence 4799999999999887766543
No 423
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=90.85 E-value=0.089 Score=48.56 Aligned_cols=22 Identities=32% Similarity=0.554 Sum_probs=20.0
Q ss_pred ceEEeCCCCChHHHHHHHHHHh
Q 007575 367 GVLLVGLPGTGKTLLAKAVAGE 388 (597)
Q Consensus 367 gVLL~GPPGTGKT~LArAIA~e 388 (597)
-|+|.|++|+|||+|++.+++.
T Consensus 4 kv~ivG~~gvGKStLl~~l~~~ 25 (184)
T 2zej_A 4 KLMIVGNTGSGKTTLLQQLMKT 25 (184)
T ss_dssp EEEEESCTTSSHHHHHHHHTCC
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4899999999999999999873
No 424
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=90.82 E-value=0.11 Score=47.15 Aligned_cols=22 Identities=36% Similarity=0.699 Sum_probs=20.1
Q ss_pred ceEEeCCCCChHHHHHHHHHHh
Q 007575 367 GVLLVGLPGTGKTLLAKAVAGE 388 (597)
Q Consensus 367 gVLL~GPPGTGKT~LArAIA~e 388 (597)
.+.|.|++|+|||+|.+++++.
T Consensus 5 ~v~lvG~~gvGKStL~~~l~~~ 26 (165)
T 2wji_A 5 EIALIGNPNVGKSTIFNALTGE 26 (165)
T ss_dssp EEEEECSTTSSHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4899999999999999999874
No 425
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=90.78 E-value=0.08 Score=48.80 Aligned_cols=25 Identities=16% Similarity=0.264 Sum_probs=21.9
Q ss_pred CCCceEEeCCCCChHHHHHHHHHHh
Q 007575 364 PPRGVLLVGLPGTGKTLLAKAVAGE 388 (597)
Q Consensus 364 ~p~gVLL~GPPGTGKT~LArAIA~e 388 (597)
....|+|.|++|+|||+|..++.+.
T Consensus 22 ~~~~i~v~G~~~~GKSsli~~l~~~ 46 (195)
T 1svi_A 22 GLPEIALAGRSNVGKSSFINSLINR 46 (195)
T ss_dssp CCCEEEEEEBTTSSHHHHHHHHHTC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 3457999999999999999999865
No 426
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=90.77 E-value=0.12 Score=45.69 Aligned_cols=23 Identities=30% Similarity=0.463 Sum_probs=20.7
Q ss_pred CceEEeCCCCChHHHHHHHHHHh
Q 007575 366 RGVLLVGLPGTGKTLLAKAVAGE 388 (597)
Q Consensus 366 ~gVLL~GPPGTGKT~LArAIA~e 388 (597)
..|++.|++|+|||+|+.++.+.
T Consensus 5 ~~i~v~G~~~~GKssl~~~l~~~ 27 (168)
T 1u8z_A 5 HKVIMVGSGGVGKSALTLQFMYD 27 (168)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHhC
Confidence 46999999999999999999874
No 427
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=90.77 E-value=0.11 Score=46.66 Aligned_cols=23 Identities=52% Similarity=0.736 Sum_probs=20.5
Q ss_pred CceEEeCCCCChHHHHHHHHHHh
Q 007575 366 RGVLLVGLPGTGKTLLAKAVAGE 388 (597)
Q Consensus 366 ~gVLL~GPPGTGKT~LArAIA~e 388 (597)
..|+|.|++|+|||+|++++.+.
T Consensus 5 ~ki~i~G~~~vGKSsl~~~l~~~ 27 (175)
T 2nzj_A 5 YRVVLLGDPGVGKTSLASLFAGK 27 (175)
T ss_dssp EEEEEECCTTSSHHHHHHHHHCC
T ss_pred EEEEEECCCCccHHHHHHHHhcC
Confidence 35999999999999999999764
No 428
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=90.75 E-value=0.097 Score=52.62 Aligned_cols=26 Identities=27% Similarity=0.434 Sum_probs=22.1
Q ss_pred CCCceEEeCCCCChHHHHHHHHHHhc
Q 007575 364 PPRGVLLVGLPGTGKTLLAKAVAGEA 389 (597)
Q Consensus 364 ~p~gVLL~GPPGTGKT~LArAIA~el 389 (597)
...-+.|.||+|+|||+|++++++..
T Consensus 36 ~Ge~~~liG~nGsGKSTLl~~l~Gl~ 61 (266)
T 4g1u_C 36 SGEMVAIIGPNGAGKSTLLRLLTGYL 61 (266)
T ss_dssp TTCEEEEECCTTSCHHHHHHHHTSSS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhcCC
Confidence 34458899999999999999999854
No 429
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=90.74 E-value=0.13 Score=45.93 Aligned_cols=24 Identities=25% Similarity=0.336 Sum_probs=21.2
Q ss_pred CceEEeCCCCChHHHHHHHHHHhc
Q 007575 366 RGVLLVGLPGTGKTLLAKAVAGEA 389 (597)
Q Consensus 366 ~gVLL~GPPGTGKT~LArAIA~el 389 (597)
..|++.|++|+|||+|++++.+..
T Consensus 7 ~~i~v~G~~~~GKSsli~~l~~~~ 30 (170)
T 1z0j_A 7 LKVCLLGDTGVGKSSIMWRFVEDS 30 (170)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHSC
T ss_pred eEEEEECcCCCCHHHHHHHHHcCC
Confidence 358999999999999999998753
No 430
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=90.73 E-value=0.091 Score=55.12 Aligned_cols=26 Identities=31% Similarity=0.485 Sum_probs=22.0
Q ss_pred CCCceEEeCCCCChHHHHHHHHHHhc
Q 007575 364 PPRGVLLVGLPGTGKTLLAKAVAGEA 389 (597)
Q Consensus 364 ~p~gVLL~GPPGTGKT~LArAIA~el 389 (597)
...-+.|.||+|+|||+|.+.||+-.
T Consensus 25 ~Ge~~~llGpnGsGKSTLLr~iaGl~ 50 (348)
T 3d31_A 25 SGEYFVILGPTGAGKTLFLELIAGFH 50 (348)
T ss_dssp TTCEEEEECCCTHHHHHHHHHHHTSS
T ss_pred CCCEEEEECCCCccHHHHHHHHHcCC
Confidence 34457899999999999999999853
No 431
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=90.68 E-value=0.1 Score=54.96 Aligned_cols=25 Identities=32% Similarity=0.416 Sum_probs=21.5
Q ss_pred CCceEEeCCCCChHHHHHHHHHHhc
Q 007575 365 PRGVLLVGLPGTGKTLLAKAVAGEA 389 (597)
Q Consensus 365 p~gVLL~GPPGTGKT~LArAIA~el 389 (597)
..-+.|.||+|+|||+|.+.||+-.
T Consensus 29 Ge~~~llGpnGsGKSTLLr~iaGl~ 53 (362)
T 2it1_A 29 GEFMALLGPSGSGKSTLLYTIAGIY 53 (362)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CCEEEEECCCCchHHHHHHHHhcCC
Confidence 3457899999999999999999853
No 432
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=90.68 E-value=0.13 Score=45.75 Aligned_cols=22 Identities=18% Similarity=0.362 Sum_probs=20.1
Q ss_pred ceEEeCCCCChHHHHHHHHHHh
Q 007575 367 GVLLVGLPGTGKTLLAKAVAGE 388 (597)
Q Consensus 367 gVLL~GPPGTGKT~LArAIA~e 388 (597)
.|++.|++|+|||+|..++.+.
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~ 26 (170)
T 1ek0_A 5 KLVLLGEAAVGKSSIVLRFVSN 26 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5899999999999999999864
No 433
>3e2i_A Thymidine kinase; Zn-binding, ATP-binding, DNA synthesis, nucleotide-B transferase; HET: MSE; 2.01A {Staphylococcus aureus}
Probab=90.67 E-value=0.063 Score=52.86 Aligned_cols=30 Identities=17% Similarity=0.085 Sum_probs=19.8
Q ss_pred ceEEeCCCCChHHH-HHHHHHH--hcCCCeeee
Q 007575 367 GVLLVGLPGTGKTL-LAKAVAG--EAEVPFISC 396 (597)
Q Consensus 367 gVLL~GPPGTGKT~-LArAIA~--el~~pfi~i 396 (597)
-.+++||.|+|||+ |.+.+-+ +.+..++.+
T Consensus 30 I~vitG~M~sGKTT~Llr~~~r~~~~g~kvli~ 62 (219)
T 3e2i_A 30 IECITGSMFSGKSEELIRRLRRGIYAKQKVVVF 62 (219)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHcCCceEEE
Confidence 35789999999998 5555422 335555444
No 434
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=90.66 E-value=0.1 Score=54.93 Aligned_cols=26 Identities=35% Similarity=0.300 Sum_probs=21.9
Q ss_pred CCCceEEeCCCCChHHHHHHHHHHhc
Q 007575 364 PPRGVLLVGLPGTGKTLLAKAVAGEA 389 (597)
Q Consensus 364 ~p~gVLL~GPPGTGKT~LArAIA~el 389 (597)
...-+.|.||+|+|||+|.+.+|+-.
T Consensus 28 ~Ge~~~llGpnGsGKSTLLr~iaGl~ 53 (359)
T 2yyz_A 28 DGEFVALLGPSGCGKTTTLLMLAGIY 53 (359)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHHTSS
T ss_pred CCCEEEEEcCCCchHHHHHHHHHCCC
Confidence 34457899999999999999999853
No 435
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=90.65 E-value=0.33 Score=50.27 Aligned_cols=26 Identities=23% Similarity=0.294 Sum_probs=22.0
Q ss_pred CCCceEEeCCCCChHHHHHHHHHHhc
Q 007575 364 PPRGVLLVGLPGTGKTLLAKAVAGEA 389 (597)
Q Consensus 364 ~p~gVLL~GPPGTGKT~LArAIA~el 389 (597)
....+.|.|+||+|||+++.++++.+
T Consensus 55 ~~~~i~i~G~~g~GKSTl~~~l~~~~ 80 (341)
T 2p67_A 55 NTLRLGVTGTPGAGKSTFLEAFGMLL 80 (341)
T ss_dssp CSEEEEEEECTTSCHHHHHHHHHHHH
T ss_pred CCEEEEEEcCCCCCHHHHHHHHHHHH
Confidence 34568899999999999999998754
No 436
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=90.63 E-value=0.11 Score=52.72 Aligned_cols=26 Identities=31% Similarity=0.379 Sum_probs=22.1
Q ss_pred CCCceEEeCCCCChHHHHHHHHHHhc
Q 007575 364 PPRGVLLVGLPGTGKTLLAKAVAGEA 389 (597)
Q Consensus 364 ~p~gVLL~GPPGTGKT~LArAIA~el 389 (597)
...-+.|.||.|+|||||++.+++..
T Consensus 46 ~Ge~~~liG~NGsGKSTLlk~l~Gl~ 71 (279)
T 2ihy_A 46 KGDKWILYGLNGAGKTTLLNILNAYE 71 (279)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCCC
Confidence 34458899999999999999999854
No 437
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=90.59 E-value=0.11 Score=54.68 Aligned_cols=25 Identities=36% Similarity=0.485 Sum_probs=21.5
Q ss_pred CCceEEeCCCCChHHHHHHHHHHhc
Q 007575 365 PRGVLLVGLPGTGKTLLAKAVAGEA 389 (597)
Q Consensus 365 p~gVLL~GPPGTGKT~LArAIA~el 389 (597)
..-+.|.||+|+|||+|.+.||+-.
T Consensus 41 Ge~~~llGpnGsGKSTLLr~iaGl~ 65 (355)
T 1z47_A 41 GEMVGLLGPSGSGKTTILRLIAGLE 65 (355)
T ss_dssp TCEEEEECSTTSSHHHHHHHHHTSS
T ss_pred CCEEEEECCCCCcHHHHHHHHhCCC
Confidence 3457899999999999999999853
No 438
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=90.59 E-value=0.45 Score=43.80 Aligned_cols=23 Identities=26% Similarity=0.390 Sum_probs=20.7
Q ss_pred ceEEeCCCCChHHHHHHHHHHhc
Q 007575 367 GVLLVGLPGTGKTLLAKAVAGEA 389 (597)
Q Consensus 367 gVLL~GPPGTGKT~LArAIA~el 389 (597)
.|+|.|++|+|||+|+.++.+..
T Consensus 25 ki~v~G~~~~GKSsli~~l~~~~ 47 (191)
T 3dz8_A 25 KLLIIGNSSVGKTSFLFRYADDT 47 (191)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHT
T ss_pred EEEEECCCCcCHHHHHHHHhcCC
Confidence 59999999999999999998753
No 439
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=90.57 E-value=0.11 Score=55.27 Aligned_cols=26 Identities=35% Similarity=0.496 Sum_probs=21.9
Q ss_pred CCCceEEeCCCCChHHHHHHHHHHhc
Q 007575 364 PPRGVLLVGLPGTGKTLLAKAVAGEA 389 (597)
Q Consensus 364 ~p~gVLL~GPPGTGKT~LArAIA~el 389 (597)
...-+.|.||+|+|||+|.+.|++-.
T Consensus 28 ~Ge~~~llGpsGsGKSTLLr~iaGl~ 53 (381)
T 3rlf_A 28 EGEFVVFVGPSGCGKSTLLRMIAGLE 53 (381)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CCCEEEEEcCCCchHHHHHHHHHcCC
Confidence 33457899999999999999999853
No 440
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=90.55 E-value=0.11 Score=55.03 Aligned_cols=26 Identities=31% Similarity=0.423 Sum_probs=22.0
Q ss_pred CCCceEEeCCCCChHHHHHHHHHHhc
Q 007575 364 PPRGVLLVGLPGTGKTLLAKAVAGEA 389 (597)
Q Consensus 364 ~p~gVLL~GPPGTGKT~LArAIA~el 389 (597)
...-+.|.||+|+|||+|.+.||+-.
T Consensus 36 ~Ge~~~llGpnGsGKSTLLr~iaGl~ 61 (372)
T 1v43_A 36 DGEFLVLLGPSGCGKTTTLRMIAGLE 61 (372)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CCCEEEEECCCCChHHHHHHHHHcCC
Confidence 34457899999999999999999853
No 441
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=90.47 E-value=0.09 Score=56.89 Aligned_cols=55 Identities=22% Similarity=0.328 Sum_probs=46.4
Q ss_pred ceeEEEecCCCCCchhHH--HHHhCCceecCCCCC---------------------------CcCcHHHHHHHHHHHHHH
Q 007575 241 KRIVYTTTRPSDIKTPYE--KMLENQVEFGSPDKR---------------------------SGGFLNSALIALFYVAVL 291 (597)
Q Consensus 241 ~~~~~~t~~~~~~~~~~~--~~~~~~v~~~~~~~~---------------------------~~~~~~~~l~~l~~~~~l 291 (597)
..++.|||+|+.+|+++. ++|++.++|+.|+.. +.||.+++|..+|..|.+
T Consensus 321 vivI~ATNrp~~LDpAllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~~~~d~dl~~lA~~t~G~sGADi~~l~~eA~~ 400 (437)
T 4b4t_L 321 TKIIMATNRPDTLDPALLRPGRLDRKVEIPLPNEAGRLEIFKIHTAKVKKTGEFDFEAAVKMSDGFNGADIRNCATEAGF 400 (437)
T ss_dssp SEEEEEESSTTSSCTTTTSTTSEEEEECCCCCCHHHHHHHHHHHHHTSCBCSCCCHHHHHHTCCSCCHHHHHHHHHHHHH
T ss_pred eEEEEecCCchhhCHHHhCCCccceeeecCCcCHHHHHHHHHHHhcCCCCCcccCHHHHHHhCCCCCHHHHHHHHHHHHH
Confidence 357899999999999875 569999999888743 689999999999999988
Q ss_pred HHHH
Q 007575 292 AGLL 295 (597)
Q Consensus 292 ~~~~ 295 (597)
.++.
T Consensus 401 ~air 404 (437)
T 4b4t_L 401 FAIR 404 (437)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 8764
No 442
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=90.45 E-value=0.13 Score=45.80 Aligned_cols=22 Identities=27% Similarity=0.341 Sum_probs=20.1
Q ss_pred ceEEeCCCCChHHHHHHHHHHh
Q 007575 367 GVLLVGLPGTGKTLLAKAVAGE 388 (597)
Q Consensus 367 gVLL~GPPGTGKT~LArAIA~e 388 (597)
.|++.|++|+|||+|+.++.+.
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~ 26 (172)
T 2erx_A 5 RVAVFGAGGVGKSSLVLRFVKG 26 (172)
T ss_dssp EEEEECCTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5899999999999999999874
No 443
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=90.42 E-value=0.14 Score=46.13 Aligned_cols=23 Identities=30% Similarity=0.390 Sum_probs=20.6
Q ss_pred CceEEeCCCCChHHHHHHHHHHh
Q 007575 366 RGVLLVGLPGTGKTLLAKAVAGE 388 (597)
Q Consensus 366 ~gVLL~GPPGTGKT~LArAIA~e 388 (597)
..|++.|++|+|||+|..++.+.
T Consensus 8 ~~i~v~G~~~~GKSsli~~l~~~ 30 (177)
T 1wms_A 8 FKVILLGDGGVGKSSLMNRYVTN 30 (177)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 35899999999999999999864
No 444
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=90.42 E-value=0.72 Score=43.27 Aligned_cols=22 Identities=27% Similarity=0.373 Sum_probs=20.2
Q ss_pred ceEEeCCCCChHHHHHHHHHHh
Q 007575 367 GVLLVGLPGTGKTLLAKAVAGE 388 (597)
Q Consensus 367 gVLL~GPPGTGKT~LArAIA~e 388 (597)
.|+|.|++|+|||+|+.++.+.
T Consensus 27 ki~vvG~~~~GKSsLi~~l~~~ 48 (217)
T 2f7s_A 27 KLLALGDSGVGKTTFLYRYTDN 48 (217)
T ss_dssp EEEEESCTTSSHHHHHHHHHCS
T ss_pred EEEEECcCCCCHHHHHHHHhcC
Confidence 5999999999999999999864
No 445
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=90.42 E-value=0.14 Score=46.21 Aligned_cols=24 Identities=29% Similarity=0.419 Sum_probs=21.1
Q ss_pred CCceEEeCCCCChHHHHHHHHHHh
Q 007575 365 PRGVLLVGLPGTGKTLLAKAVAGE 388 (597)
Q Consensus 365 p~gVLL~GPPGTGKT~LArAIA~e 388 (597)
...|++.|++|+|||+|+.++.+.
T Consensus 8 ~~~i~v~G~~~~GKSsli~~l~~~ 31 (182)
T 1ky3_A 8 ILKVIILGDSGVGKTSLMHRYVND 31 (182)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHS
T ss_pred eEEEEEECCCCCCHHHHHHHHHhC
Confidence 346999999999999999999874
No 446
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=90.41 E-value=0.14 Score=45.70 Aligned_cols=23 Identities=30% Similarity=0.263 Sum_probs=20.7
Q ss_pred CceEEeCCCCChHHHHHHHHHHh
Q 007575 366 RGVLLVGLPGTGKTLLAKAVAGE 388 (597)
Q Consensus 366 ~gVLL~GPPGTGKT~LArAIA~e 388 (597)
..|++.|++|+|||+|+.++.+.
T Consensus 7 ~~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1z08_A 7 FKVVLLGEGCVGKTSLVLRYCEN 29 (170)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHC
T ss_pred eEEEEECcCCCCHHHHHHHHHcC
Confidence 35999999999999999999865
No 447
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=90.40 E-value=0.45 Score=50.91 Aligned_cols=25 Identities=32% Similarity=0.456 Sum_probs=21.5
Q ss_pred CCceEEeCCCCChHHHHHHHHHHhc
Q 007575 365 PRGVLLVGLPGTGKTLLAKAVAGEA 389 (597)
Q Consensus 365 p~gVLL~GPPGTGKT~LArAIA~el 389 (597)
...++|.||+|+|||+|++.+++..
T Consensus 174 GQr~~IvG~sG~GKTtLl~~Iar~i 198 (422)
T 3ice_A 174 GQRGLIVAPPKAGKTMLLQNIAQSI 198 (422)
T ss_dssp TCEEEEECCSSSSHHHHHHHHHHHH
T ss_pred CcEEEEecCCCCChhHHHHHHHHHH
Confidence 4459999999999999999998753
No 448
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=90.32 E-value=0.42 Score=58.26 Aligned_cols=28 Identities=21% Similarity=0.322 Sum_probs=23.3
Q ss_pred CCCCCceEEeCCCCChHHHHHHHHHHhc
Q 007575 362 ARPPRGVLLVGLPGTGKTLLAKAVAGEA 389 (597)
Q Consensus 362 ~~~p~gVLL~GPPGTGKT~LArAIA~el 389 (597)
.++...+-|+||+|+|||+|++.+++..
T Consensus 1056 i~~Ge~v~ivG~sGsGKSTl~~~l~g~~ 1083 (1284)
T 3g5u_A 1056 VKKGQTLALVGSSGCGKSTVVQLLERFY 1083 (1284)
T ss_dssp ECSSSEEEEECSSSTTHHHHHHHHTTSS
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhcCc
Confidence 3445568899999999999999999753
No 449
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=90.28 E-value=0.17 Score=49.79 Aligned_cols=25 Identities=20% Similarity=0.260 Sum_probs=18.7
Q ss_pred CCceEEeCCCCChHHHHHHHHHHhc
Q 007575 365 PRGVLLVGLPGTGKTLLAKAVAGEA 389 (597)
Q Consensus 365 p~gVLL~GPPGTGKT~LArAIA~el 389 (597)
+.-|.|.||+|+|||++++.++..+
T Consensus 25 g~~I~~eG~~GsGKsT~~~~l~~~l 49 (227)
T 3v9p_A 25 GKFITFEGIDGAGKTTHLQWFCDRL 49 (227)
T ss_dssp CCEEEEECCC---CHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHH
Confidence 3457788999999999999999876
No 450
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=90.27 E-value=0.13 Score=46.98 Aligned_cols=23 Identities=35% Similarity=0.642 Sum_probs=20.8
Q ss_pred CceEEeCCCCChHHHHHHHHHHh
Q 007575 366 RGVLLVGLPGTGKTLLAKAVAGE 388 (597)
Q Consensus 366 ~gVLL~GPPGTGKT~LArAIA~e 388 (597)
..|.|.|++|+|||+|.+++++.
T Consensus 8 ~~i~lvG~~gvGKStL~~~l~~~ 30 (188)
T 2wjg_A 8 YEIALIGNPNVGKSTIFNALTGE 30 (188)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 36899999999999999999874
No 451
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=90.27 E-value=0.11 Score=52.28 Aligned_cols=25 Identities=36% Similarity=0.610 Sum_probs=21.8
Q ss_pred CCceEEeCCCCChHHHHHHHHHHhc
Q 007575 365 PRGVLLVGLPGTGKTLLAKAVAGEA 389 (597)
Q Consensus 365 p~gVLL~GPPGTGKT~LArAIA~el 389 (597)
..-+.|.||+|+|||+|.+.+++..
T Consensus 30 Ge~~~i~G~NGsGKSTLlk~l~Gl~ 54 (263)
T 2pjz_A 30 GEKVIILGPNGSGKTTLLRAISGLL 54 (263)
T ss_dssp SSEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CEEEEEECCCCCCHHHHHHHHhCCC
Confidence 4458899999999999999999864
No 452
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=90.25 E-value=0.76 Score=54.43 Aligned_cols=24 Identities=33% Similarity=0.476 Sum_probs=20.7
Q ss_pred CCCceEEeCCCCChHHHHHHHHHH
Q 007575 364 PPRGVLLVGLPGTGKTLLAKAVAG 387 (597)
Q Consensus 364 ~p~gVLL~GPPGTGKT~LArAIA~ 387 (597)
...-+.|.||.|+|||+|++.+++
T Consensus 460 ~Ge~v~LiGpNGsGKSTLLk~Lag 483 (986)
T 2iw3_A 460 RARRYGICGPNGCGKSTLMRAIAN 483 (986)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHhC
Confidence 344588999999999999999984
No 453
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=90.25 E-value=0.15 Score=45.94 Aligned_cols=23 Identities=30% Similarity=0.417 Sum_probs=20.5
Q ss_pred CceEEeCCCCChHHHHHHHHHHh
Q 007575 366 RGVLLVGLPGTGKTLLAKAVAGE 388 (597)
Q Consensus 366 ~gVLL~GPPGTGKT~LArAIA~e 388 (597)
..|+|.|++|+|||+|+.++.+.
T Consensus 7 ~ki~v~G~~~~GKssl~~~l~~~ 29 (178)
T 2hxs_A 7 LKIVVLGDGASGKTSLTTCFAQE 29 (178)
T ss_dssp EEEEEECCTTSSHHHHHHHHHGG
T ss_pred EEEEEECcCCCCHHHHHHHHHhC
Confidence 46999999999999999999864
No 454
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=90.22 E-value=0.12 Score=54.61 Aligned_cols=25 Identities=32% Similarity=0.460 Sum_probs=21.6
Q ss_pred CCceEEeCCCCChHHHHHHHHHHhc
Q 007575 365 PRGVLLVGLPGTGKTLLAKAVAGEA 389 (597)
Q Consensus 365 p~gVLL~GPPGTGKT~LArAIA~el 389 (597)
..-+.|.||+|+|||+|.+.||+-.
T Consensus 29 Ge~~~llGpnGsGKSTLLr~iaGl~ 53 (372)
T 1g29_1 29 GEFMILLGPSGCGKTTTLRMIAGLE 53 (372)
T ss_dssp TCEEEEECSTTSSHHHHHHHHHTSS
T ss_pred CCEEEEECCCCcHHHHHHHHHHcCC
Confidence 3457899999999999999999853
No 455
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=90.22 E-value=0.13 Score=45.72 Aligned_cols=22 Identities=32% Similarity=0.533 Sum_probs=20.1
Q ss_pred ceEEeCCCCChHHHHHHHHHHh
Q 007575 367 GVLLVGLPGTGKTLLAKAVAGE 388 (597)
Q Consensus 367 gVLL~GPPGTGKT~LArAIA~e 388 (597)
.|++.|++|+|||+|..++.+.
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~ 26 (170)
T 1g16_A 5 KILLIGDSGVGKSCLLVRFVED 26 (170)
T ss_dssp EEEEEESTTSSHHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHHhC
Confidence 5899999999999999999864
No 456
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=90.18 E-value=0.15 Score=45.29 Aligned_cols=23 Identities=22% Similarity=0.273 Sum_probs=20.5
Q ss_pred CceEEeCCCCChHHHHHHHHHHh
Q 007575 366 RGVLLVGLPGTGKTLLAKAVAGE 388 (597)
Q Consensus 366 ~gVLL~GPPGTGKT~LArAIA~e 388 (597)
..|+|.|++|+|||+|+.++.+.
T Consensus 7 ~~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1r2q_A 7 FKLVLLGESAVGKSSLVLRFVKG 29 (170)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHcC
Confidence 35899999999999999999863
No 457
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=90.15 E-value=0.13 Score=45.93 Aligned_cols=21 Identities=48% Similarity=0.737 Sum_probs=19.1
Q ss_pred ceEEeCCCCChHHHHHHHHHH
Q 007575 367 GVLLVGLPGTGKTLLAKAVAG 387 (597)
Q Consensus 367 gVLL~GPPGTGKT~LArAIA~ 387 (597)
.|+|.|++|+|||+|+.++.+
T Consensus 4 ki~ivG~~~~GKSsli~~l~~ 24 (169)
T 3q85_A 4 KVMLVGESGVGKSTLAGTFGG 24 (169)
T ss_dssp EEEEECSTTSSHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 489999999999999999974
No 458
>2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster}
Probab=90.14 E-value=0.83 Score=48.47 Aligned_cols=52 Identities=15% Similarity=0.183 Sum_probs=30.3
Q ss_pred CcccccccCChHHHHHHHHHHHHhcChhHHhhcCC---CCCCceEEeCCCCChHHHH
Q 007575 328 TITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGA---RPPRGVLLVGLPGTGKTLL 381 (597)
Q Consensus 328 ~vtf~dV~G~de~k~~L~eiv~~l~~p~~~~~lg~---~~p~gVLL~GPPGTGKT~L 381 (597)
-.+|+++.-.+...+.|.+. .+..|..++.... ...+.+++.+|+|+|||+.
T Consensus 55 ~~~f~~~~l~~~l~~~l~~~--g~~~pt~iQ~~ai~~i~~g~d~i~~a~TGsGKT~a 109 (434)
T 2db3_A 55 IQHFTSADLRDIIIDNVNKS--GYKIPTPIQKCSIPVISSGRDLMACAQTGSGKTAA 109 (434)
T ss_dssp CCCGGGSCCCHHHHHHHHHT--TCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHH
T ss_pred cCChhhcCCCHHHHHHHHHc--CCCCCCHHHHHHHHHHhcCCCEEEECCCCCCchHH
Confidence 45788875555555544331 1333333332211 1246799999999999984
No 459
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=90.13 E-value=0.17 Score=45.28 Aligned_cols=24 Identities=29% Similarity=0.459 Sum_probs=21.1
Q ss_pred CCceEEeCCCCChHHHHHHHHHHh
Q 007575 365 PRGVLLVGLPGTGKTLLAKAVAGE 388 (597)
Q Consensus 365 p~gVLL~GPPGTGKT~LArAIA~e 388 (597)
...|++.|++|+|||+|..++.+.
T Consensus 7 ~~~i~v~G~~~~GKssl~~~l~~~ 30 (171)
T 1upt_A 7 EMRILILGLDGAGKTTILYRLQVG 30 (171)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ccEEEEECCCCCCHHHHHHHHhcC
Confidence 446999999999999999999764
No 460
>4a2q_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.40A {Anas platyrhynchos}
Probab=90.10 E-value=1.8 Score=49.78 Aligned_cols=23 Identities=22% Similarity=0.486 Sum_probs=18.8
Q ss_pred CceEEeCCCCChHHHHHHHHHHh
Q 007575 366 RGVLLVGLPGTGKTLLAKAVAGE 388 (597)
Q Consensus 366 ~gVLL~GPPGTGKT~LArAIA~e 388 (597)
+.+++.+|+|+|||..+-..+-+
T Consensus 264 ~~~ll~~~TGsGKTl~~~~~i~~ 286 (797)
T 4a2q_A 264 KNALICAPTGSGKTFVSILICEH 286 (797)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHH
T ss_pred CCEEEEeCCCChHHHHHHHHHHH
Confidence 46999999999999887666544
No 461
>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A*
Probab=90.10 E-value=0.21 Score=48.71 Aligned_cols=29 Identities=24% Similarity=0.263 Sum_probs=24.8
Q ss_pred CCceEEeCCCCChHHHHHHHHHHhcCCCe
Q 007575 365 PRGVLLVGLPGTGKTLLAKAVAGEAEVPF 393 (597)
Q Consensus 365 p~gVLL~GPPGTGKT~LArAIA~el~~pf 393 (597)
+.-|.|.|++|+|||++++.++..++.+.
T Consensus 5 g~~i~~eG~~g~GKst~~~~l~~~l~~~~ 33 (216)
T 3tmk_A 5 GKLILIEGLDRTGKTTQCNILYKKLQPNC 33 (216)
T ss_dssp CCEEEEEECSSSSHHHHHHHHHHHHCSSE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhcccc
Confidence 45688899999999999999999987543
No 462
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=90.05 E-value=0.16 Score=45.13 Aligned_cols=22 Identities=23% Similarity=0.407 Sum_probs=20.2
Q ss_pred ceEEeCCCCChHHHHHHHHHHh
Q 007575 367 GVLLVGLPGTGKTLLAKAVAGE 388 (597)
Q Consensus 367 gVLL~GPPGTGKT~LArAIA~e 388 (597)
.|++.|++|+|||+|.+++.+.
T Consensus 5 ki~v~G~~~~GKssli~~l~~~ 26 (167)
T 1c1y_A 5 KLVVLGSGGVGKSALTVQFVQG 26 (167)
T ss_dssp EEEEECSTTSSHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5899999999999999999874
No 463
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=90.04 E-value=0.15 Score=46.34 Aligned_cols=23 Identities=26% Similarity=0.264 Sum_probs=20.8
Q ss_pred CceEEeCCCCChHHHHHHHHHHh
Q 007575 366 RGVLLVGLPGTGKTLLAKAVAGE 388 (597)
Q Consensus 366 ~gVLL~GPPGTGKT~LArAIA~e 388 (597)
..|+|.|++|+|||+|+.++.+.
T Consensus 12 ~ki~v~G~~~~GKSsli~~l~~~ 34 (195)
T 3bc1_A 12 IKFLALGDSGVGKTSVLYQYTDG 34 (195)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHhcC
Confidence 46999999999999999999864
No 464
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=89.98 E-value=0.14 Score=55.17 Aligned_cols=56 Identities=18% Similarity=0.353 Sum_probs=46.4
Q ss_pred ceeEEEecCCCCCchhHHH--HHhCCceec-CCCCC---------------------------CcCcHHHHHHHHHHHHH
Q 007575 241 KRIVYTTTRPSDIKTPYEK--MLENQVEFG-SPDKR---------------------------SGGFLNSALIALFYVAV 290 (597)
Q Consensus 241 ~~~~~~t~~~~~~~~~~~~--~~~~~v~~~-~~~~~---------------------------~~~~~~~~l~~l~~~~~ 290 (597)
..++.+||+|+.+|+++.+ +++..++|. .|+.. +.||.+++|..+|..|+
T Consensus 312 v~vI~aTN~~~~LD~AllRpGRfd~~I~~p~lPd~~~R~~Il~~~~~~~~l~~~~dl~~lA~~t~G~sgadi~~l~~eA~ 391 (428)
T 4b4t_K 312 VKVIMATNRADTLDPALLRPGRLDRKIEFPSLRDRRERRLIFGTIASKMSLAPEADLDSLIIRNDSLSGAVIAAIMQEAG 391 (428)
T ss_dssp EEEEEEESCSSSCCHHHHSSSSEEEEEECCSSCCHHHHHHHHHHHHHSSCBCTTCCHHHHHHHTTTCCHHHHHHHHHHHH
T ss_pred EEEEEecCChhhcChhhhcCCcceEEEEcCCCCCHHHHHHHHHHHhcCCCCCcccCHHHHHHHCCCCCHHHHHHHHHHHH
Confidence 3578999999999999874 899999884 56532 68999999999999999
Q ss_pred HHHHHh
Q 007575 291 LAGLLH 296 (597)
Q Consensus 291 l~~~~~ 296 (597)
+.++.+
T Consensus 392 ~~a~r~ 397 (428)
T 4b4t_K 392 LRAVRK 397 (428)
T ss_dssp HHHHHT
T ss_pred HHHHHC
Confidence 888754
No 465
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=89.93 E-value=0.093 Score=55.11 Aligned_cols=26 Identities=27% Similarity=0.415 Sum_probs=21.9
Q ss_pred CCCceEEeCCCCChHHHHHHHHHHhc
Q 007575 364 PPRGVLLVGLPGTGKTLLAKAVAGEA 389 (597)
Q Consensus 364 ~p~gVLL~GPPGTGKT~LArAIA~el 389 (597)
...-+.|.||+|+|||+|.+.||+-.
T Consensus 30 ~Ge~~~llGpnGsGKSTLLr~iaGl~ 55 (353)
T 1oxx_K 30 NGERFGILGPSGAGKTTFMRIIAGLD 55 (353)
T ss_dssp TTCEEEEECSCHHHHHHHHHHHHTSS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCCC
Confidence 34457899999999999999999853
No 466
>2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication, viral replication, nucleotide-binding; 2.10A {Kokobera virus} PDB: 2v6j_A
Probab=89.90 E-value=0.35 Score=51.65 Aligned_cols=21 Identities=29% Similarity=0.264 Sum_probs=16.8
Q ss_pred CceEEeCCCCChHHHHH-HHHH
Q 007575 366 RGVLLVGLPGTGKTLLA-KAVA 386 (597)
Q Consensus 366 ~gVLL~GPPGTGKT~LA-rAIA 386 (597)
+.+|+.||+|+|||..+ -++.
T Consensus 3 ~~~lv~a~TGsGKT~~~l~~~l 24 (431)
T 2v6i_A 3 ELTVLDLHPGAGKTRRVLPQLV 24 (431)
T ss_dssp CEEEEECCTTSCTTTTHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHH
Confidence 47999999999999875 4343
No 467
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=89.86 E-value=0.17 Score=45.03 Aligned_cols=22 Identities=32% Similarity=0.450 Sum_probs=19.8
Q ss_pred ceEEeCCCCChHHHHHHHHHHh
Q 007575 367 GVLLVGLPGTGKTLLAKAVAGE 388 (597)
Q Consensus 367 gVLL~GPPGTGKT~LArAIA~e 388 (597)
.|++.|++|+|||+|+.++.+.
T Consensus 2 ki~~~G~~~~GKssl~~~l~~~ 23 (164)
T 1r8s_A 2 RILMVGLDAAGKTTILYKLKLG 23 (164)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 3899999999999999999764
No 468
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=89.68 E-value=0.14 Score=47.00 Aligned_cols=23 Identities=39% Similarity=0.648 Sum_probs=20.9
Q ss_pred CceEEeCCCCChHHHHHHHHHHh
Q 007575 366 RGVLLVGLPGTGKTLLAKAVAGE 388 (597)
Q Consensus 366 ~gVLL~GPPGTGKT~LArAIA~e 388 (597)
..|.|.|+||+|||+|.+++++.
T Consensus 5 ~ki~ivG~~g~GKStLl~~l~~~ 27 (172)
T 2gj8_A 5 MKVVIAGRPNAGKSSLLNALAGR 27 (172)
T ss_dssp EEEEEEESTTSSHHHHHHHHHTS
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 35899999999999999999875
No 469
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=89.67 E-value=0.17 Score=45.40 Aligned_cols=23 Identities=22% Similarity=0.352 Sum_probs=20.8
Q ss_pred CceEEeCCCCChHHHHHHHHHHh
Q 007575 366 RGVLLVGLPGTGKTLLAKAVAGE 388 (597)
Q Consensus 366 ~gVLL~GPPGTGKT~LArAIA~e 388 (597)
..|+|.|++|+|||+|+.++.+.
T Consensus 16 ~~i~v~G~~~~GKSsli~~l~~~ 38 (179)
T 1z0f_A 16 FKYIIIGDMGVGKSCLLHQFTEK 38 (179)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 46999999999999999999875
No 470
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=89.64 E-value=0.18 Score=46.85 Aligned_cols=24 Identities=21% Similarity=0.308 Sum_probs=21.4
Q ss_pred CCceEEeCCCCChHHHHHHHHHHh
Q 007575 365 PRGVLLVGLPGTGKTLLAKAVAGE 388 (597)
Q Consensus 365 p~gVLL~GPPGTGKT~LArAIA~e 388 (597)
...|+|.|++|+|||+|+.++.+.
T Consensus 28 ~~ki~v~G~~~vGKSsli~~l~~~ 51 (196)
T 2atv_A 28 EVKLAIFGRAGVGKSALVVRFLTK 51 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 456999999999999999999875
No 471
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=89.62 E-value=0.18 Score=45.87 Aligned_cols=24 Identities=25% Similarity=0.414 Sum_probs=21.1
Q ss_pred CceEEeCCCCChHHHHHHHHHHhc
Q 007575 366 RGVLLVGLPGTGKTLLAKAVAGEA 389 (597)
Q Consensus 366 ~gVLL~GPPGTGKT~LArAIA~el 389 (597)
..|+|.|++|+|||+|+.++.+..
T Consensus 5 ~ki~v~G~~~~GKSsli~~l~~~~ 28 (189)
T 4dsu_A 5 YKLVVVGADGVGKSALTIQLIQNH 28 (189)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHSS
T ss_pred EEEEEECCCCCCHHHHHHHHHhCC
Confidence 358999999999999999998753
No 472
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=89.60 E-value=0.2 Score=45.72 Aligned_cols=24 Identities=17% Similarity=0.322 Sum_probs=21.5
Q ss_pred CCceEEeCCCCChHHHHHHHHHHh
Q 007575 365 PRGVLLVGLPGTGKTLLAKAVAGE 388 (597)
Q Consensus 365 p~gVLL~GPPGTGKT~LArAIA~e 388 (597)
...|+|.|++|+|||+|+.++.+.
T Consensus 7 ~~ki~v~G~~~~GKSsli~~l~~~ 30 (208)
T 3clv_A 7 SYKTVLLGESSVGKSSIVLRLTKD 30 (208)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 446999999999999999999875
No 473
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=89.59 E-value=0.18 Score=46.15 Aligned_cols=24 Identities=21% Similarity=0.117 Sum_probs=20.9
Q ss_pred CceEEeCCCCChHHHHHHHHHHhc
Q 007575 366 RGVLLVGLPGTGKTLLAKAVAGEA 389 (597)
Q Consensus 366 ~gVLL~GPPGTGKT~LArAIA~el 389 (597)
..|+|.|++|+|||+|++.+.+..
T Consensus 15 ~ki~vvG~~~~GKssL~~~l~~~~ 38 (198)
T 3t1o_A 15 FKIVYYGPGLSGKTTNLKWIYSKV 38 (198)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHTS
T ss_pred cEEEEECCCCCCHHHHHHHHHhhc
Confidence 359999999999999999888754
No 474
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=89.59 E-value=0.16 Score=45.62 Aligned_cols=23 Identities=22% Similarity=0.264 Sum_probs=20.5
Q ss_pred CceEEeCCCCChHHHHHHHHHHh
Q 007575 366 RGVLLVGLPGTGKTLLAKAVAGE 388 (597)
Q Consensus 366 ~gVLL~GPPGTGKT~LArAIA~e 388 (597)
..|+|.|++|+|||+|+.++.+.
T Consensus 15 ~~i~v~G~~~~GKssli~~l~~~ 37 (179)
T 2y8e_A 15 FKLVFLGEQSVGKTSLITRFMYD 37 (179)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 35999999999999999999864
No 475
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=89.50 E-value=0.13 Score=54.68 Aligned_cols=26 Identities=35% Similarity=0.438 Sum_probs=22.2
Q ss_pred CCCCceEEeCCCCChHHHHHHHHHHh
Q 007575 363 RPPRGVLLVGLPGTGKTLLAKAVAGE 388 (597)
Q Consensus 363 ~~p~gVLL~GPPGTGKT~LArAIA~e 388 (597)
....-+.|.||+|+|||+|.++|++.
T Consensus 45 ~~Ge~~~llGpsGsGKSTLLr~iaGl 70 (390)
T 3gd7_A 45 SPGQRVGLLGRTGSGKSTLLSAFLRL 70 (390)
T ss_dssp CTTCEEEEEESTTSSHHHHHHHHHTC
T ss_pred cCCCEEEEECCCCChHHHHHHHHhCC
Confidence 34456889999999999999999984
No 476
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=89.44 E-value=0.14 Score=52.13 Aligned_cols=27 Identities=30% Similarity=0.391 Sum_probs=22.7
Q ss_pred CCCCceEEeCCCCChHHHHHHHHHHhc
Q 007575 363 RPPRGVLLVGLPGTGKTLLAKAVAGEA 389 (597)
Q Consensus 363 ~~p~gVLL~GPPGTGKT~LArAIA~el 389 (597)
....-+.|.||.|+|||+|++.+++..
T Consensus 62 ~~Ge~~~i~G~NGsGKSTLlk~l~Gl~ 88 (290)
T 2bbs_A 62 ERGQLLAVAGSTGAGKTSLLMMIMGEL 88 (290)
T ss_dssp CTTCEEEEEESTTSSHHHHHHHHTTSS
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhcCC
Confidence 344458899999999999999999864
No 477
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=89.41 E-value=0.17 Score=45.52 Aligned_cols=23 Identities=26% Similarity=0.384 Sum_probs=20.9
Q ss_pred CceEEeCCCCChHHHHHHHHHHh
Q 007575 366 RGVLLVGLPGTGKTLLAKAVAGE 388 (597)
Q Consensus 366 ~gVLL~GPPGTGKT~LArAIA~e 388 (597)
..|+|.|++|+|||+|+.++.+.
T Consensus 10 ~~i~v~G~~~~GKssli~~l~~~ 32 (181)
T 2fn4_A 10 HKLVVVGGGGVGKSALTIQFIQS 32 (181)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 46999999999999999999875
No 478
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=89.38 E-value=0.19 Score=45.53 Aligned_cols=23 Identities=30% Similarity=0.463 Sum_probs=20.8
Q ss_pred CceEEeCCCCChHHHHHHHHHHh
Q 007575 366 RGVLLVGLPGTGKTLLAKAVAGE 388 (597)
Q Consensus 366 ~gVLL~GPPGTGKT~LArAIA~e 388 (597)
..|+|.|++|+|||+|+.++.+.
T Consensus 19 ~ki~v~G~~~~GKSsli~~l~~~ 41 (187)
T 2a9k_A 19 HKVIMVGSGGVGKSALTLQFMYD 41 (187)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHhhC
Confidence 46999999999999999999874
No 479
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=89.37 E-value=0.18 Score=47.14 Aligned_cols=24 Identities=29% Similarity=0.429 Sum_probs=21.2
Q ss_pred CCceEEeCCCCChHHHHHHHHHHh
Q 007575 365 PRGVLLVGLPGTGKTLLAKAVAGE 388 (597)
Q Consensus 365 p~gVLL~GPPGTGKT~LArAIA~e 388 (597)
...|+|.|++|+|||+|+.++.+.
T Consensus 20 ~~~i~v~G~~~~GKSsli~~l~~~ 43 (213)
T 3cph_A 20 IMKILLIGDSGVGKSCLLVRFVED 43 (213)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHC
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 346999999999999999999864
No 480
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=89.36 E-value=0.19 Score=46.17 Aligned_cols=24 Identities=25% Similarity=0.401 Sum_probs=21.2
Q ss_pred CceEEeCCCCChHHHHHHHHHHhc
Q 007575 366 RGVLLVGLPGTGKTLLAKAVAGEA 389 (597)
Q Consensus 366 ~gVLL~GPPGTGKT~LArAIA~el 389 (597)
..|++.|++|+|||+|+.++++..
T Consensus 22 ~ki~vvG~~~~GKSsli~~l~~~~ 45 (190)
T 3con_A 22 YKLVVVGAGGVGKSALTIQLIQNH 45 (190)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSS
T ss_pred eEEEEECcCCCCHHHHHHHHHcCC
Confidence 358999999999999999998753
No 481
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=89.35 E-value=0.19 Score=45.43 Aligned_cols=23 Identities=26% Similarity=0.408 Sum_probs=20.7
Q ss_pred CceEEeCCCCChHHHHHHHHHHh
Q 007575 366 RGVLLVGLPGTGKTLLAKAVAGE 388 (597)
Q Consensus 366 ~gVLL~GPPGTGKT~LArAIA~e 388 (597)
..|+|.|++|+|||+|+.++.+.
T Consensus 13 ~ki~v~G~~~~GKSsli~~l~~~ 35 (181)
T 2efe_B 13 AKLVLLGDVGAGKSSLVLRFVKD 35 (181)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHC
T ss_pred eEEEEECcCCCCHHHHHHHHHcC
Confidence 46999999999999999999864
No 482
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=89.32 E-value=0.079 Score=49.64 Aligned_cols=27 Identities=15% Similarity=0.217 Sum_probs=21.8
Q ss_pred CCCCceEEeCCCCChHHHHHHHHHHhc
Q 007575 363 RPPRGVLLVGLPGTGKTLLAKAVAGEA 389 (597)
Q Consensus 363 ~~p~gVLL~GPPGTGKT~LArAIA~el 389 (597)
.....+.|.|++|+|||+|.+++++..
T Consensus 24 ~~~~~v~lvG~~g~GKSTLl~~l~g~~ 50 (210)
T 1pui_A 24 DTGIEVAFAGRSNAGKSSALNTLTNQK 50 (210)
T ss_dssp SCSEEEEEEECTTSSHHHHHTTTCCC-
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 334458999999999999999997643
No 483
>2oca_A DAR protein, ATP-dependent DNA helicase UVSW; ATP-dependant helicase, T4-bacteriophage, recombination, hydrolase; 2.70A {Enterobacteria phage T4}
Probab=89.28 E-value=0.56 Score=50.48 Aligned_cols=22 Identities=18% Similarity=0.188 Sum_probs=18.7
Q ss_pred ceEEeCCCCChHHHHHHHHHHh
Q 007575 367 GVLLVGLPGTGKTLLAKAVAGE 388 (597)
Q Consensus 367 gVLL~GPPGTGKT~LArAIA~e 388 (597)
.+||+||+|+|||..+-.++..
T Consensus 130 ~~ll~~~tGsGKT~~~~~~~~~ 151 (510)
T 2oca_A 130 RRILNLPTSAGRSLIQALLARY 151 (510)
T ss_dssp EEEEECCSTTTHHHHHHHHHHH
T ss_pred CcEEEeCCCCCHHHHHHHHHHH
Confidence 5899999999999998766654
No 484
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=89.27 E-value=0.17 Score=55.04 Aligned_cols=28 Identities=32% Similarity=0.347 Sum_probs=23.5
Q ss_pred CCCCCceEEeCCCCChHHHHHHHHHHhc
Q 007575 362 ARPPRGVLLVGLPGTGKTLLAKAVAGEA 389 (597)
Q Consensus 362 ~~~p~gVLL~GPPGTGKT~LArAIA~el 389 (597)
.....-+.|.||+|+|||+|+|.+++.+
T Consensus 135 i~~Ge~v~IvGpnGsGKSTLlr~L~Gl~ 162 (460)
T 2npi_A 135 NFEGPRVVIVGGSQTGKTSLSRTLCSYA 162 (460)
T ss_dssp SSSCCCEEEEESTTSSHHHHHHHHHHTT
T ss_pred eCCCCEEEEECCCCCCHHHHHHHHhCcc
Confidence 3445569999999999999999998854
No 485
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=89.26 E-value=0.19 Score=46.29 Aligned_cols=23 Identities=35% Similarity=0.450 Sum_probs=20.7
Q ss_pred CceEEeCCCCChHHHHHHHHHHh
Q 007575 366 RGVLLVGLPGTGKTLLAKAVAGE 388 (597)
Q Consensus 366 ~gVLL~GPPGTGKT~LArAIA~e 388 (597)
..|+|.|++|+|||+|+.++.+.
T Consensus 26 ~ki~v~G~~~~GKSsLi~~l~~~ 48 (193)
T 2oil_A 26 FKVVLIGESGVGKTNLLSRFTRN 48 (193)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHS
T ss_pred eEEEEECcCCCCHHHHHHHHhcC
Confidence 35999999999999999999874
No 486
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=89.07 E-value=0.18 Score=46.24 Aligned_cols=23 Identities=30% Similarity=0.393 Sum_probs=20.8
Q ss_pred CceEEeCCCCChHHHHHHHHHHh
Q 007575 366 RGVLLVGLPGTGKTLLAKAVAGE 388 (597)
Q Consensus 366 ~gVLL~GPPGTGKT~LArAIA~e 388 (597)
..|++.|++|+|||+|++++.+.
T Consensus 8 ~ki~v~G~~~vGKSsli~~l~~~ 30 (184)
T 1m7b_A 8 CKIVVVGDSQCGKTALLHVFAKD 30 (184)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHhcC
Confidence 45899999999999999999875
No 487
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=89.01 E-value=0.2 Score=49.21 Aligned_cols=27 Identities=22% Similarity=0.251 Sum_probs=22.5
Q ss_pred CCCceEEeCCCCChHHHHHHHHHHhcC
Q 007575 364 PPRGVLLVGLPGTGKTLLAKAVAGEAE 390 (597)
Q Consensus 364 ~p~gVLL~GPPGTGKT~LArAIA~el~ 390 (597)
.+.-|.|.|++|+|||++++.++..++
T Consensus 20 ~~~~i~~~G~~g~GKst~~~~l~~~l~ 46 (223)
T 3ld9_A 20 GSMFITFEGIDGSGKTTQSHLLAEYLS 46 (223)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHh
Confidence 345577889999999999999998654
No 488
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=89.00 E-value=0.19 Score=45.80 Aligned_cols=23 Identities=30% Similarity=0.391 Sum_probs=19.7
Q ss_pred ceEEeCCCCChHHHHHHHHHHhc
Q 007575 367 GVLLVGLPGTGKTLLAKAVAGEA 389 (597)
Q Consensus 367 gVLL~GPPGTGKT~LArAIA~el 389 (597)
-.+|+||.|+|||++..|+.--+
T Consensus 25 ~~~I~G~NGsGKStil~Ai~~~l 47 (149)
T 1f2t_A 25 INLIIGQNGSGKSSLLDAILVGL 47 (149)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHH
Confidence 46899999999999999997543
No 489
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=88.98 E-value=0.19 Score=45.24 Aligned_cols=23 Identities=30% Similarity=0.433 Sum_probs=20.4
Q ss_pred CceEEeCCCCChHHHHHHHHHHh
Q 007575 366 RGVLLVGLPGTGKTLLAKAVAGE 388 (597)
Q Consensus 366 ~gVLL~GPPGTGKT~LArAIA~e 388 (597)
..|+|.|++|+|||+|+.++.+.
T Consensus 10 ~~i~v~G~~~~GKssl~~~l~~~ 32 (181)
T 3tw8_B 10 FKLLIIGDSGVGKSSLLLRFADN 32 (181)
T ss_dssp EEEEEECCTTSCHHHHHHHHCSC
T ss_pred eEEEEECCCCCCHHHHHHHHhcC
Confidence 46999999999999999999753
No 490
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=88.98 E-value=0.38 Score=45.57 Aligned_cols=25 Identities=28% Similarity=0.380 Sum_probs=21.7
Q ss_pred CCceEEeCCCCChHHHHHHHHHHhc
Q 007575 365 PRGVLLVGLPGTGKTLLAKAVAGEA 389 (597)
Q Consensus 365 p~gVLL~GPPGTGKT~LArAIA~el 389 (597)
...++|.|++|+|||+|+..++...
T Consensus 38 ~~~i~ivG~~gvGKTtl~~~l~~~~ 62 (226)
T 2hf9_A 38 VVAFDFMGAIGSGKTLLIEKLIDNL 62 (226)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHh
Confidence 3468899999999999999998875
No 491
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=88.97 E-value=0.3 Score=51.20 Aligned_cols=34 Identities=21% Similarity=0.255 Sum_probs=25.8
Q ss_pred CCCceEEeCCCCChHHHHHHHHHHhc---CCCeeeec
Q 007575 364 PPRGVLLVGLPGTGKTLLAKAVAGEA---EVPFISCS 397 (597)
Q Consensus 364 ~p~gVLL~GPPGTGKT~LArAIA~el---~~pfi~is 397 (597)
...++++.||+|+|||++++.++..+ +..++.++
T Consensus 34 ~~~~~~i~G~~G~GKs~~~~~~~~~~~~~~~~~~~~D 70 (392)
T 4ag6_A 34 TNSNWTILAKPGAGKSFTAKMLLLREYMQGSRVIIID 70 (392)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEE
T ss_pred ccCceEEEcCCCCCHHHHHHHHHHHHHHCCCEEEEEe
Confidence 34579999999999999999998653 44444443
No 492
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=88.95 E-value=0.19 Score=45.75 Aligned_cols=23 Identities=30% Similarity=0.442 Sum_probs=20.7
Q ss_pred CceEEeCCCCChHHHHHHHHHHh
Q 007575 366 RGVLLVGLPGTGKTLLAKAVAGE 388 (597)
Q Consensus 366 ~gVLL~GPPGTGKT~LArAIA~e 388 (597)
..|+|.|++|+|||+|++++.+.
T Consensus 11 ~ki~v~G~~~~GKSsli~~l~~~ 33 (186)
T 2bme_A 11 FKFLVIGNAGTGKSCLLHQFIEK 33 (186)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 46999999999999999999864
No 493
>4a2w_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.70A {Anas platyrhynchos}
Probab=88.89 E-value=2.4 Score=49.89 Aligned_cols=24 Identities=21% Similarity=0.455 Sum_probs=19.9
Q ss_pred CceEEeCCCCChHHHHHHHHHHhc
Q 007575 366 RGVLLVGLPGTGKTLLAKAVAGEA 389 (597)
Q Consensus 366 ~gVLL~GPPGTGKT~LArAIA~el 389 (597)
+.+++.+|+|+|||..+-..+.+.
T Consensus 264 ~~~ll~a~TGsGKTl~~~~~i~~~ 287 (936)
T 4a2w_A 264 KNALICAPTGSGKTFVSILICEHH 287 (936)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHTT
T ss_pred CCEEEEeCCCchHHHHHHHHHHHH
Confidence 469999999999998877776544
No 494
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=88.87 E-value=0.21 Score=45.03 Aligned_cols=24 Identities=38% Similarity=0.411 Sum_probs=21.1
Q ss_pred CCceEEeCCCCChHHHHHHHHHHh
Q 007575 365 PRGVLLVGLPGTGKTLLAKAVAGE 388 (597)
Q Consensus 365 p~gVLL~GPPGTGKT~LArAIA~e 388 (597)
...|+|.|++|+|||+|+.++.+.
T Consensus 10 ~~~i~v~G~~~~GKssli~~l~~~ 33 (180)
T 2g6b_A 10 AFKVMLVGDSGVGKTCLLVRFKDG 33 (180)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ceEEEEECcCCCCHHHHHHHHHhC
Confidence 346999999999999999999864
No 495
>3ch4_B Pmkase, phosphomevalonate kinase; parallel beta-sheet with the strand order 23145, walker A motif, cholesterol biosynthesis, lipid synthesis; 1.76A {Homo sapiens}
Probab=88.86 E-value=0.17 Score=49.10 Aligned_cols=41 Identities=17% Similarity=0.183 Sum_probs=30.0
Q ss_pred CCCCCceEEeCCCCChHHHHHHHHHHhcCC-CeeeechhhhH
Q 007575 362 ARPPRGVLLVGLPGTGKTLLAKAVAGEAEV-PFISCSASEFV 402 (597)
Q Consensus 362 ~~~p~gVLL~GPPGTGKT~LArAIA~el~~-pfi~is~sef~ 402 (597)
..|+.-|+|+|.||+||+++|+.+...++. .+..++.++-+
T Consensus 8 ~~~~~II~itGk~~SGKd~va~~l~~~~g~~~~~vv~msD~i 49 (202)
T 3ch4_B 8 GAPRLVLLFSGKRKSGKDFVTEALQSRLGADVCAVLRLSGPL 49 (202)
T ss_dssp CCCSEEEEEEECTTSSHHHHHHHHHHHHCTTTEEEECTHHHH
T ss_pred cCCCEEEEEECCCCCChHHHHHHHHHHcCCCCceEEEccHHH
Confidence 446677899999999999999999887752 23334555443
No 496
>2wjy_A Regulator of nonsense transcripts 1; nonsense mediated decay, zinc-finger, ATP-binding, metal-BIN UPF2, UPF1, helicase, hydrolase; 2.50A {Homo sapiens} PDB: 2wjv_A 2iyk_A
Probab=88.85 E-value=0.17 Score=58.65 Aligned_cols=22 Identities=36% Similarity=0.525 Sum_probs=17.9
Q ss_pred ceEEeCCCCChHHHHHHHHHHh
Q 007575 367 GVLLVGLPGTGKTLLAKAVAGE 388 (597)
Q Consensus 367 gVLL~GPPGTGKT~LArAIA~e 388 (597)
.++|.||||||||+++..++..
T Consensus 373 ~~lI~GppGTGKT~ti~~~i~~ 394 (800)
T 2wjy_A 373 LSLIQGPPGTGKTVTSATIVYH 394 (800)
T ss_dssp EEEEECCTTSCHHHHHHHHHHH
T ss_pred eEEEEcCCCCCHHHHHHHHHHH
Confidence 4799999999999887766543
No 497
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=88.76 E-value=0.22 Score=45.11 Aligned_cols=22 Identities=27% Similarity=0.294 Sum_probs=20.0
Q ss_pred ceEEeCCCCChHHHHHHHHHHh
Q 007575 367 GVLLVGLPGTGKTLLAKAVAGE 388 (597)
Q Consensus 367 gVLL~GPPGTGKT~LArAIA~e 388 (597)
.|++.|++|+|||+|+.++.+.
T Consensus 7 ~i~~~G~~~~GKssl~~~l~~~ 28 (186)
T 1mh1_A 7 KCVVVGDGAVGKTCLLISYTTN 28 (186)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5899999999999999999864
No 498
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=88.73 E-value=0.22 Score=45.26 Aligned_cols=23 Identities=26% Similarity=0.348 Sum_probs=20.7
Q ss_pred CceEEeCCCCChHHHHHHHHHHh
Q 007575 366 RGVLLVGLPGTGKTLLAKAVAGE 388 (597)
Q Consensus 366 ~gVLL~GPPGTGKT~LArAIA~e 388 (597)
..|+|.|++|+|||+|+.++.+.
T Consensus 19 ~ki~v~G~~~~GKSsl~~~l~~~ 41 (183)
T 3kkq_A 19 YKLVVVGDGGVGKSALTIQFFQK 41 (183)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 46899999999999999999865
No 499
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=88.71 E-value=0.15 Score=49.38 Aligned_cols=24 Identities=33% Similarity=0.374 Sum_probs=21.2
Q ss_pred CCceEEeCCCCChHHHHHHHHHHh
Q 007575 365 PRGVLLVGLPGTGKTLLAKAVAGE 388 (597)
Q Consensus 365 p~gVLL~GPPGTGKT~LArAIA~e 388 (597)
+.-+.|.||.|+|||++++.+++.
T Consensus 20 g~~i~i~G~~GsGKSTl~~~L~~~ 43 (230)
T 2vp4_A 20 PFTVLIEGNIGSGKTTYLNHFEKY 43 (230)
T ss_dssp CEEEEEECSTTSCHHHHHHTTGGG
T ss_pred ceEEEEECCCCCCHHHHHHHHHhc
Confidence 345779999999999999999987
No 500
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=88.69 E-value=0.26 Score=44.57 Aligned_cols=24 Identities=25% Similarity=0.162 Sum_probs=21.3
Q ss_pred CCceEEeCCCCChHHHHHHHHHHh
Q 007575 365 PRGVLLVGLPGTGKTLLAKAVAGE 388 (597)
Q Consensus 365 p~gVLL~GPPGTGKT~LArAIA~e 388 (597)
...|++.|++|+|||+|..++.+.
T Consensus 8 ~~ki~v~G~~~~GKssl~~~~~~~ 31 (182)
T 3bwd_D 8 FIKCVTVGDGAVGKTCLLISYTSN 31 (182)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEEECCCCCCHHHHHHHHhcC
Confidence 456999999999999999999864
Done!