BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 007576
(597 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3E8X|A Chain A, Putative Nad-Dependent EpimeraseDEHYDRATASE FROM BACILLUS
HALODURANS
Length = 236
Score = 55.1 bits (131), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 37/119 (31%), Positives = 59/119 (49%), Gaps = 11/119 (9%)
Query: 452 LILEYIKALPTGQETD------FVLVSCTGLGVEPSR----REQVLKAKRDGEDSLRRSG 501
++++ A+ T QE + F+ VS G V+P + L AKR +D L+RS
Sbjct: 104 ILIDLWGAIKTIQEAEKRGIKRFIXVSSVGT-VDPDQGPXNXRHYLVAKRLADDELKRSS 162
Query: 502 LGYTIIRPGPLKEEPGGQRALIFDQGNRITQGISCADVADICVKALHDSTARNKSFDVC 560
L YTI+RPGPL E + + + IT+ I+ DVA + + + K+F+V
Sbjct: 163 LDYTIVRPGPLSNEESTGKVTVSPHFSEITRSITRHDVAKVIAELVDQQHTIGKTFEVL 221
Score = 29.3 bits (64), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 14/38 (36%), Positives = 22/38 (57%)
Query: 160 QNTTVLVVGATSRIGRIVIRKLMLRGYSVKALVRKADQ 197
Q VLVVGA ++ R ++ +L +G+ A VR +Q
Sbjct: 20 QGXRVLVVGANGKVARYLLSELKNKGHEPVAXVRNEEQ 57
>pdb|1XQ6|A Chain A, X-ray Structure Of Gene Product From Arabidopsis Thaliana
At5g02240
pdb|1XQ6|B Chain B, X-ray Structure Of Gene Product From Arabidopsis Thaliana
At5g02240
pdb|1YBM|A Chain A, X-Ray Structure Of Selenomethionyl Gene Product From
Arabidopsis Thaliana At5g02240 In Space Group P21212
pdb|1YBM|B Chain B, X-Ray Structure Of Selenomethionyl Gene Product From
Arabidopsis Thaliana At5g02240 In Space Group P21212
pdb|2Q46|A Chain A, Ensemble Refinement Of The Protein Crystal Structure Of
Gene Product From Arabidopsis Thaliana At5g02240
pdb|2Q46|B Chain B, Ensemble Refinement Of The Protein Crystal Structure Of
Gene Product From Arabidopsis Thaliana At5g02240
pdb|2Q4B|A Chain A, Ensemble Refinement Of The Protein Crystal Structure Of
Selenomethionyl Gene Product From Arabidopsis Thaliana
At5g02240 In Space Group P21212
pdb|2Q4B|B Chain B, Ensemble Refinement Of The Protein Crystal Structure Of
Selenomethionyl Gene Product From Arabidopsis Thaliana
At5g02240 In Space Group P21212
Length = 253
Score = 54.3 bits (129), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 31/79 (39%), Positives = 47/79 (59%), Gaps = 4/79 (5%)
Query: 485 QVLKAKRDGEDSLRRSGLGYTIIRPGPLKEEPGGQRALIFDQGNRI----TQGISCADVA 540
+L KR E L SG YTIIR G L ++ GG R L+ + + + T+ + ADVA
Sbjct: 150 NILVWKRKAEQYLADSGTPYTIIRAGGLLDKEGGVRELLVGKDDELLQTDTKTVPRADVA 209
Query: 541 DICVKALHDSTARNKSFDV 559
++C++AL A+NK+FD+
Sbjct: 210 EVCIQALLFEEAKNKAFDL 228
Score = 36.2 bits (82), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 22/76 (28%), Positives = 40/76 (52%), Gaps = 4/76 (5%)
Query: 163 TVLVVGATSRIGRIVIRKLMLRG--YSVKALVRKADQEVVDMLPRSVEIVLGDVGDPCTL 220
TVLV GA+ R G+IV +KL + K LVR A + + + ++ +GD+ D ++
Sbjct: 6 TVLVTGASGRTGQIVYKKLKEGSDKFVAKGLVRSAQGK--EKIGGEADVFIGDITDADSI 63
Query: 221 KAAVENCNKIIYCATA 236
A + + ++ +A
Sbjct: 64 NPAFQGIDALVILTSA 79
>pdb|2C29|D Chain D, Structure Of Dihydroflavonol Reductase From Vitis Vinifera
At 1.8 A.
pdb|2C29|F Chain F, Structure Of Dihydroflavonol Reductase From Vitis Vinifera
At 1.8 A.
pdb|2IOD|A Chain A, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol-4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|2IOD|B Chain B, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol-4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|2IOD|C Chain C, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol-4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|2IOD|D Chain D, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol-4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|2NNL|D Chain D, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol-4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|2NNL|F Chain F, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol-4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|3C1T|A Chain A, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol 4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|3C1T|B Chain B, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol 4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|3C1T|C Chain C, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol 4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|3C1T|D Chain D, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol 4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|3BXX|A Chain A, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol 4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|3BXX|B Chain B, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol 4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|3BXX|C Chain C, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol 4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|3BXX|D Chain D, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol 4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|3BXX|E Chain E, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol 4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|3BXX|F Chain F, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol 4-Reductase Alters The Functional
Geometry Of The Catalytic Site
Length = 337
Score = 46.2 bits (108), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 46/85 (54%), Gaps = 7/85 (8%)
Query: 158 GAQNTTVLVVGATSRIGRIVIRKLMLRGYSVKALVR-----KADQEVVDMLPRSVEIVL- 211
G+Q+ TV V GA+ IG ++ +L+ RGY+V+A VR K + ++D+ + L
Sbjct: 2 GSQSETVCVTGASGFIGSWLVMRLLERGYTVRATVRDPTNVKKVKHLLDLPKAETHLTLW 61
Query: 212 -GDVGDPCTLKAAVENCNKIIYCAT 235
D+ D + A++ C + + AT
Sbjct: 62 KADLADEGSFDEAIKGCTGVFHVAT 86
>pdb|2RH8|A Chain A, Structure Of Apo Anthocyanidin Reductase From Vitis
Vinifera
pdb|3HFS|A Chain A, Structure Of Apo Anthocyanidin Reductase From Vitis
Vinifera
pdb|3HFS|B Chain B, Structure Of Apo Anthocyanidin Reductase From Vitis
Vinifera
Length = 338
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 31/106 (29%), Positives = 51/106 (48%), Gaps = 10/106 (9%)
Query: 163 TVLVVGATSRIGRIVIRKLMLRGYSVKALVRKAD-QEVVDMLPR-----SVEIVLGDVGD 216
T VVG T + ++++ L+ +GY+V VR D Q+ V L ++I D+ D
Sbjct: 11 TACVVGGTGFVASLLVKLLLQKGYAVNTTVRDPDNQKKVSHLLELQELGDLKIFRADLTD 70
Query: 217 PCTLKAAVENCNKIIYCAT----ARSTITGDLFRVDYQGVYNVTKA 258
+ +A + C+ + + AT A D+ + QGV NV KA
Sbjct: 71 ELSFEAPIAGCDFVFHVATPVHFASEDPENDMIKPAIQGVVNVMKA 116
>pdb|2P4H|X Chain X, Crystal Structure Of Vestitone Reductase From Alfalfa
(Medicago Sativa L.)
Length = 322
Score = 38.1 bits (87), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 38/80 (47%), Gaps = 8/80 (10%)
Query: 164 VLVVGATSRIGRIVIRKLMLRGYSVKALV-----RKADQEVVDMLPRSVE---IVLGDVG 215
V V G T +G +I+ L+ GYSV + RK D + LP + E D+
Sbjct: 4 VCVTGGTGFLGSWIIKSLLENGYSVNTTIRADPERKRDVSFLTNLPGASEKLHFFNADLS 63
Query: 216 DPCTLKAAVENCNKIIYCAT 235
+P + AA+E C I + A+
Sbjct: 64 NPDSFAAAIEGCVGIFHTAS 83
>pdb|2GAS|A Chain A, Crystal Structure Of Isoflavone Reductase
pdb|2GAS|B Chain B, Crystal Structure Of Isoflavone Reductase
Length = 307
Score = 34.7 bits (78), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 45/87 (51%), Gaps = 12/87 (13%)
Query: 164 VLVVGATSRIGRIVIRKLMLRGYSVKALVRK--------ADQEVVDMLPRSVEIVL--GD 213
+L++G T IGR ++ + G ALVRK +E++D +S+ ++L GD
Sbjct: 5 ILILGPTGAIGRHIVWASIKAGNPTYALVRKTITAANPETKEELIDNY-QSLGVILLEGD 63
Query: 214 VGDPCTLKAAVENCNKIIYCATARSTI 240
+ D TL A++ + I+ CA R I
Sbjct: 64 INDHETLVKAIKQVD-IVICAAGRLLI 89
>pdb|4F6L|B Chain B, Crystal Structure Of Aureusimine Biosynthetic Cluster
Reductase Domain
pdb|4F6L|A Chain A, Crystal Structure Of Aureusimine Biosynthetic Cluster
Reductase Domain
Length = 508
Score = 33.1 bits (74), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 30/123 (24%), Positives = 56/123 (45%), Gaps = 24/123 (19%)
Query: 165 LVVGATSRIGRIVIRKLMLRGYSVKALVRKADQEV-----------------VDMLPRSV 207
L+ GAT +G +I L + + +R ++E+ V+M+ ++
Sbjct: 154 LLTGATGFLGAYLIEALQGYSHRIYCFIRADNEEIAWYKLMTNLNDYFSEETVEMMLSNI 213
Query: 208 EIVLGDVGDPCTLKAAV-ENCNKIIYCATARSTITGD---LFRVDYQGVYNVTKAFQDFN 263
E+++GD C + EN + II+ A AR+ GD +V+ QG +V + Q +
Sbjct: 214 EVIVGDF--ECMDDVVLPENMDTIIH-AGARTDHFGDDDEFEKVNVQGTVDVIRLAQQHH 270
Query: 264 NKL 266
+L
Sbjct: 271 ARL 273
>pdb|3QVO|A Chain A, Structure Of A Rossmann-Fold Nad(P)-Binding Family Protein
From Shigella Flexneri
Length = 236
Score = 32.3 bits (72), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 25/96 (26%), Positives = 45/96 (46%), Gaps = 6/96 (6%)
Query: 163 TVLVVGATSRIGRIVIRKLMLRGYSVKALVRKADQEVVDMLPRSVEIVLGDVGDPCTLKA 222
VL++GA +I R VI +L + + L + ++ P + +I+ GDV + LK
Sbjct: 25 NVLILGAGGQIARHVINQLADKQTIKQTLFARQPAKIHKPYPTNSQIIXGDVLNHAALKQ 84
Query: 223 AVENCNKIIYCATARSTITGDLFRVDYQGVYNVTKA 258
A + + I+Y + +TG+ + V KA
Sbjct: 85 AXQGQD-IVY-----ANLTGEDLDIQANSVIAAXKA 114
Score = 29.3 bits (64), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 18/29 (62%)
Query: 487 LKAKRDGEDSLRRSGLGYTIIRPGPLKEE 515
LK R D++ SGL YTI+RP L +E
Sbjct: 148 LKPFRRAADAIEASGLEYTILRPAWLTDE 176
>pdb|4ID9|A Chain A, Crystal Structure Of A Short-Chain DehydrogenaseREDUCTASE
SUPERFAMILY Protein From Agrobacterium Tumefaciens
(Target Efi-506441) With Bound Nad, Monoclinic Form 1
pdb|4ID9|B Chain B, Crystal Structure Of A Short-Chain DehydrogenaseREDUCTASE
SUPERFAMILY Protein From Agrobacterium Tumefaciens
(Target Efi-506441) With Bound Nad, Monoclinic Form 1
pdb|4IDG|A Chain A, Crystal Structure Of A Short-Chain DehydrogenaseREDUCTASE
SUPERFAMILY Protein From Agrobacterium Tumefaciens
(Target Efi-506441) With Bound Nad, Monoclinic Form 2
pdb|4IDG|B Chain B, Crystal Structure Of A Short-Chain DehydrogenaseREDUCTASE
SUPERFAMILY Protein From Agrobacterium Tumefaciens
(Target Efi-506441) With Bound Nad, Monoclinic Form 2
Length = 347
Score = 32.0 bits (71), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 24/100 (24%), Positives = 43/100 (43%), Gaps = 14/100 (14%)
Query: 164 VLVVGATSRIGRIVIRKLMLRGYSVKALVRKADQEVVDMLPRSV--EIVLGDVGDPCTLK 221
+LV G+ R+GR V+ L +G +V+ D+ P E V+G + D L
Sbjct: 22 ILVTGSAGRVGRAVVAALRTQGRTVRGF---------DLRPSGTGGEEVVGSLEDGQALS 72
Query: 222 AAVENCNKIIYCATARSTITGD---LFRVDYQGVYNVTKA 258
A+ + +++ S D +F V+ +G + A
Sbjct: 73 DAIMGVSAVLHLGAFMSWAPADRDRMFAVNVEGTRRLLDA 112
>pdb|1QYC|A Chain A, Crystal Structures Of Pinoresinol-Lariciresinol And
Phenylcoumaran Benzylic Ether Reductases, And Their
Relationship To Isoflavone Reductases
pdb|1QYC|B Chain B, Crystal Structures Of Pinoresinol-Lariciresinol And
Phenylcoumaran Benzylic Ether Reductases, And Their
Relationship To Isoflavone Reductases
Length = 308
Score = 31.6 bits (70), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 38/76 (50%), Gaps = 8/76 (10%)
Query: 164 VLVVGATSRIGRIVIRKLMLRGYSVKALVRK----ADQEVVDML----PRSVEIVLGDVG 215
+L++GAT IGR V + + G+ LVR+ ++ E +L IV G +
Sbjct: 7 ILLIGATGYIGRHVAKASLDLGHPTFLLVRESTASSNSEKAQLLESFKASGANIVHGSID 66
Query: 216 DPCTLKAAVENCNKII 231
D +L AV+N + +I
Sbjct: 67 DHASLVEAVKNVDVVI 82
>pdb|2GN4|A Chain A, Crystal Structure Of Udp-Glcnac Inverting 4,6-Dehydratase
In Complex With Nadph And Udp-Glcnac
pdb|2GN4|B Chain B, Crystal Structure Of Udp-Glcnac Inverting 4,6-Dehydratase
In Complex With Nadph And Udp-Glcnac
pdb|2GN6|A Chain A, Crystal Structure Of Udp-Glcnac Inverting 4,6-Dehydratase
In Complex With Nadp And Udp-Glcnac
pdb|2GN6|B Chain B, Crystal Structure Of Udp-Glcnac Inverting 4,6-Dehydratase
In Complex With Nadp And Udp-Glcnac
pdb|2GN8|A Chain A, Crystal Structure Of Udp-Glcnac Inverting 4,6-Dehydratase
In Complex With Nadp And Udp
pdb|2GN8|B Chain B, Crystal Structure Of Udp-Glcnac Inverting 4,6-Dehydratase
In Complex With Nadp And Udp
pdb|2GN9|A Chain A, Crystal Structure Of Udp-glcnac Inverting 4,6-dehydratase
In Complex With Nadp And Udp-glc
pdb|2GN9|B Chain B, Crystal Structure Of Udp-glcnac Inverting 4,6-dehydratase
In Complex With Nadp And Udp-glc
pdb|2GNA|A Chain A, Crystal Structure Of Udp-Glcnac Inverting 4,6-Dehydratase
In Complex With Nadp And Udp-Gal
pdb|2GNA|B Chain B, Crystal Structure Of Udp-Glcnac Inverting 4,6-Dehydratase
In Complex With Nadp And Udp-Gal
Length = 344
Score = 30.4 bits (67), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 30/122 (24%), Positives = 50/122 (40%), Gaps = 20/122 (16%)
Query: 154 FAIPGAQNT----TVLVVGATSRIGRIVIRKLMLRGYSVKALVRKADQ--------EVVD 201
++P QN T+L+ G T G+ +RK++ + K +V D+ E D
Sbjct: 10 MSMPNHQNMLDNQTILITGGTGSFGKCFVRKVLDTTNAKKIIVYSRDELKQSEMAMEFND 69
Query: 202 MLPRSVEIVLGDVGDPCTLKAAVENCNKIIYCATARSTITGDL-----FRVDYQGVYNVT 256
PR + +GDV D L A+E + I+ A + + + + G NV
Sbjct: 70 --PR-MRFFIGDVRDLERLNYALEGVDICIHAAALKHVPIAEYNPLECIKTNIMGASNVI 126
Query: 257 KA 258
A
Sbjct: 127 NA 128
>pdb|3ASU|A Chain A, Crystal Structure Of Serine Dehydrogenase From Escherichia
Coli
pdb|3ASU|B Chain B, Crystal Structure Of Serine Dehydrogenase From Escherichia
Coli
pdb|3ASV|A Chain A, The Closed Form Of Serine Dehydrogenase Complexed With
Nadp+
pdb|3ASV|B Chain B, The Closed Form Of Serine Dehydrogenase Complexed With
Nadp+
pdb|3ASV|C Chain C, The Closed Form Of Serine Dehydrogenase Complexed With
Nadp+
pdb|3ASV|D Chain D, The Closed Form Of Serine Dehydrogenase Complexed With
Nadp+
pdb|3ASV|E Chain E, The Closed Form Of Serine Dehydrogenase Complexed With
Nadp+
pdb|3ASV|F Chain F, The Closed Form Of Serine Dehydrogenase Complexed With
Nadp+
Length = 248
Score = 30.0 bits (66), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 36/64 (56%), Gaps = 6/64 (9%)
Query: 164 VLVVGATSRIGRIVIRKLMLRGYSVKALVRKAD--QEVVDMLPRSVEIVLGDVGDPCTLK 221
VLV GAT+ G + R+ + +G+ V A R+ + QE+ D L ++ I DV + +
Sbjct: 3 VLVTGATAGFGECITRRFIQQGHKVIATGRRQERLQELKDELGDNLYIAQLDVRN----R 58
Query: 222 AAVE 225
AA+E
Sbjct: 59 AAIE 62
>pdb|1XA0|A Chain A, Crystal Structure Of Mcsg Target Apc35536 From Bacillus
Stearothermophilus
pdb|1XA0|B Chain B, Crystal Structure Of Mcsg Target Apc35536 From Bacillus
Stearothermophilus
Length = 328
Score = 30.0 bits (66), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 15/35 (42%), Positives = 21/35 (60%)
Query: 164 VLVVGATSRIGRIVIRKLMLRGYSVKALVRKADQE 198
VLV GAT +G + + L RGY+V+A KA +
Sbjct: 153 VLVTGATGGVGSLAVSXLAKRGYTVEASTGKAAEH 187
>pdb|1HDO|A Chain A, Human Biliverdin Ix Beta Reductase: Nadp Complex
pdb|1HE2|A Chain A, Human Biliverdin Ix Beta Reductase: NadpBILIVERDIN IX
Alpha Ternary Complex
pdb|1HE3|A Chain A, Human Biliverdin Ix Beta Reductase: NadpMESOBILIVERDIN IV
Alpha Ternary Complex
pdb|1HE4|A Chain A, Human Biliverdin Ix Beta Reductase: NadpFMN TERNARY
COMPLEX
pdb|1HE5|A Chain A, Human Biliverdin Ix Beta Reductase: NadpLUMICHROME TERNARY
Complex
Length = 206
Score = 30.0 bits (66), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 23/97 (23%), Positives = 43/97 (44%), Gaps = 3/97 (3%)
Query: 164 VLVVGATSRIGRIVIRKLMLRGYSVKALVRKADQEVVDMLPRSVEIVLGDVGDPCTLKAA 223
+ + GAT + G + + + GY V LVR + + + PR +V+GDV +
Sbjct: 6 IAIFGATGQTGLTTLAQAVQAGYEVTVLVRDSSR-LPSEGPRPAHVVVGDVLQAADVDKT 64
Query: 224 VENCNKIIYCATARSTITGDLFRVDYQGVYNVTKAFQ 260
V + +I R+ ++ V +G N+ A +
Sbjct: 65 VAGQDAVIVLLGTRNDLSPT--TVMSEGARNIVAAMK 99
>pdb|3EW7|A Chain A, Crystal Structure Of The Lmo0794 Protein From Listeria
Monocytogenes. Northeast Structural Genomics Consortium
Target Lmr162
Length = 221
Score = 30.0 bits (66), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 15/51 (29%), Positives = 28/51 (54%), Gaps = 2/51 (3%)
Query: 166 VVGATSRIGRIVIRKLMLRGYSVKALVRKADQEVVDMLPRSVEIVLGDVGD 216
++GAT R G ++ + RG+ V A+VR A + + + + I+ D+ D
Sbjct: 5 IIGATGRAGSRILEEAKNRGHEVTAIVRNAGK--ITQTHKDINILQKDIFD 53
>pdb|3P19|A Chain A, Improved Nadph-Dependent Blue Fluorescent Protein
pdb|3P19|B Chain B, Improved Nadph-Dependent Blue Fluorescent Protein
pdb|3P19|C Chain C, Improved Nadph-Dependent Blue Fluorescent Protein
pdb|3P19|D Chain D, Improved Nadph-Dependent Blue Fluorescent Protein
Length = 266
Score = 29.3 bits (64), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 20/73 (27%), Positives = 35/73 (47%), Gaps = 1/73 (1%)
Query: 158 GAQNTTVLVVGATSRIGRIVIRKLMLRGYSVKALVRKADQEVVDMLPRSVEIVLGDVGDP 217
G+ V++ GA+S IG + R+ G+ + L R+ ++ LP ++ + DV D
Sbjct: 13 GSMKKLVVITGASSGIGEAIARRFSEEGHPLLLLARRVERLKALNLPNTLCAQV-DVTDK 71
Query: 218 CTLKAAVENCNKI 230
T A+ KI
Sbjct: 72 YTFDTAITRAEKI 84
>pdb|3DQP|A Chain A, Crystal Structure Of The Oxidoreductase Ylbe From
Lactococcus Lactis, Northeast Structural Genomics
Consortium Target Kr121
Length = 219
Score = 29.3 bits (64), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 11/34 (32%), Positives = 21/34 (61%)
Query: 164 VLVVGATSRIGRIVIRKLMLRGYSVKALVRKADQ 197
+ +VG+T R+G+ +++ L Y + A RK +Q
Sbjct: 3 IFIVGSTGRVGKSLLKSLSTTDYQIYAGARKVEQ 36
>pdb|3UE5|B Chain B, Ecp-Cleaved Actin In Complex With Spir Domain D
pdb|4EFH|B Chain B, Acanthamoeba Actin Complex With Spir Domain D
Length = 66
Score = 28.9 bits (63), Expect = 7.7, Method: Composition-based stats.
Identities = 21/61 (34%), Positives = 36/61 (59%), Gaps = 11/61 (18%)
Query: 439 GPSGAKQDLRSFKLILEYIKALPTGQETDFVLVSCTGLG----VEPSRREQVLKAKRDGE 494
GP G+K+D + +ILE+I++ P ++ S LG EPS REQ++++ R G+
Sbjct: 1 GPLGSKKDAHA--MILEFIRSRPPLKKA-----SDRQLGPPRMCEPSPREQLMESIRKGK 53
Query: 495 D 495
+
Sbjct: 54 E 54
>pdb|3H2S|A Chain A, Crystal Structure Of The Q03b84 Protein From Lactobacillus
Casei. Northeast Structural Genomics Consortium Target
Lcr19.
pdb|3H2S|B Chain B, Crystal Structure Of The Q03b84 Protein From Lactobacillus
Casei. Northeast Structural Genomics Consortium Target
Lcr19
Length = 224
Score = 28.5 bits (62), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 20/69 (28%), Positives = 38/69 (55%), Gaps = 5/69 (7%)
Query: 164 VLVVGATSRIGRIVIRKLMLRGYSVKALVRKADQEVVDMLPRSVEIVLGDVGDPCTL-KA 222
+ V+GAT R G ++ + RG+ V A+VR Q+ D L +V + V +P L +A
Sbjct: 3 IAVLGATGRAGSAIVAEARRRGHEVLAVVRDP-QKAADRLGATVATL---VKEPLVLTEA 58
Query: 223 AVENCNKII 231
+++ + ++
Sbjct: 59 DLDSVDAVV 67
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.136 0.401
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 16,527,297
Number of Sequences: 62578
Number of extensions: 655577
Number of successful extensions: 1343
Number of sequences better than 100.0: 27
Number of HSP's better than 100.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 19
Number of HSP's that attempted gapping in prelim test: 1325
Number of HSP's gapped (non-prelim): 35
length of query: 597
length of database: 14,973,337
effective HSP length: 104
effective length of query: 493
effective length of database: 8,465,225
effective search space: 4173355925
effective search space used: 4173355925
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 54 (25.4 bits)