Query 007577
Match_columns 597
No_of_seqs 472 out of 4111
Neff 9.7
Searched_HMMs 46136
Date Thu Mar 28 12:30:31 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007577.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/007577hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd00116 LRR_RI Leucine-rich re 100.0 4E-28 8.7E-33 246.0 35.6 315 222-540 2-319 (319)
2 cd00116 LRR_RI Leucine-rich re 100.0 1.7E-27 3.6E-32 241.5 34.6 311 166-481 2-317 (319)
3 KOG4194 Membrane glycoprotein 100.0 2.7E-32 5.8E-37 271.4 -2.1 399 126-589 46-447 (873)
4 PLN00113 leucine-rich repeat r 100.0 3.4E-29 7.3E-34 290.7 9.6 367 157-579 159-568 (968)
5 PLN00113 leucine-rich repeat r 100.0 7.4E-29 1.6E-33 287.8 11.7 361 161-578 139-519 (968)
6 KOG4194 Membrane glycoprotein 100.0 2E-30 4.4E-35 258.1 -3.9 352 156-566 96-447 (873)
7 KOG1909 Ran GTPase-activating 99.9 2.1E-26 4.6E-31 217.3 21.4 349 210-580 22-379 (382)
8 KOG1909 Ran GTPase-activating 99.9 1.6E-26 3.6E-31 218.1 20.3 352 148-519 16-377 (382)
9 KOG0472 Leucine-rich repeat pr 99.9 1.3E-28 2.8E-33 235.3 -9.2 377 148-593 54-563 (565)
10 KOG0444 Cytoskeletal regulator 99.9 1.3E-26 2.8E-31 232.6 -5.7 334 147-539 40-373 (1255)
11 KOG0444 Cytoskeletal regulator 99.9 4.7E-25 1E-29 221.4 -5.9 348 156-570 26-374 (1255)
12 KOG4308 LRR-containing protein 99.9 9.5E-22 2.1E-26 203.9 12.5 415 155-572 45-474 (478)
13 KOG0618 Serine/threonine phosp 99.8 6.1E-21 1.3E-25 200.7 2.1 374 161-583 44-501 (1081)
14 KOG4308 LRR-containing protein 99.8 8.1E-20 1.8E-24 189.6 9.5 405 182-589 44-463 (478)
15 KOG0618 Serine/threonine phosp 99.8 2.6E-20 5.6E-25 196.0 -3.3 269 218-539 219-487 (1081)
16 COG5238 RNA1 Ran GTPase-activa 99.7 1.9E-17 4.1E-22 151.4 14.0 260 149-427 17-284 (388)
17 KOG0472 Leucine-rich repeat pr 99.7 9.8E-21 2.1E-25 181.6 -7.9 307 182-542 198-542 (565)
18 COG5238 RNA1 Ran GTPase-activa 99.7 2.9E-16 6.4E-21 143.7 16.1 271 139-429 35-317 (388)
19 PRK15387 E3 ubiquitin-protein 99.7 1.5E-16 3.2E-21 172.9 9.6 267 162-521 201-467 (788)
20 KOG4341 F-box protein containi 99.7 2.2E-16 4.8E-21 153.0 9.1 282 215-523 161-451 (483)
21 KOG4341 F-box protein containi 99.7 2.4E-16 5.2E-21 152.8 8.6 302 219-551 139-450 (483)
22 PRK15387 E3 ubiquitin-protein 99.6 1.3E-16 2.9E-21 173.2 7.1 267 190-550 201-467 (788)
23 PLN03210 Resistant to P. syrin 99.6 7E-16 1.5E-20 180.1 8.0 199 157-396 553-756 (1153)
24 KOG4237 Extracellular matrix p 99.6 1.6E-16 3.5E-21 152.7 0.2 382 154-585 58-491 (498)
25 PRK15370 E3 ubiquitin-protein 99.6 5.3E-15 1.1E-19 161.9 11.2 34 191-231 200-233 (754)
26 PRK15370 E3 ubiquitin-protein 99.6 2.9E-15 6.2E-20 164.0 8.2 258 219-549 179-436 (754)
27 PLN03210 Resistant to P. syrin 99.5 8.3E-15 1.8E-19 171.2 9.5 309 162-538 589-903 (1153)
28 KOG2120 SCF ubiquitin ligase, 99.5 6.9E-14 1.5E-18 130.0 9.6 194 360-580 186-384 (419)
29 KOG4237 Extracellular matrix p 99.5 1.1E-15 2.4E-20 147.1 -3.2 279 246-570 67-358 (498)
30 KOG2120 SCF ubiquitin ligase, 99.4 1.5E-12 3.3E-17 121.2 10.2 184 332-538 187-373 (419)
31 KOG3207 Beta-tubulin folding c 99.4 2.1E-14 4.6E-19 140.2 -3.0 230 177-429 108-340 (505)
32 KOG3207 Beta-tubulin folding c 99.3 1.2E-13 2.6E-18 135.0 -2.0 234 147-402 106-341 (505)
33 KOG0617 Ras suppressor protein 99.2 1.1E-13 2.4E-18 118.4 -7.2 198 360-590 34-231 (264)
34 KOG0617 Ras suppressor protein 99.1 7.1E-13 1.5E-17 113.5 -6.9 155 246-429 33-187 (264)
35 PF14580 LRR_9: Leucine-rich r 99.0 1.6E-10 3.4E-15 103.7 1.8 83 360-456 43-126 (175)
36 KOG1259 Nischarin, modulator o 98.9 2.4E-10 5.2E-15 106.7 0.7 157 385-573 282-442 (490)
37 PF14580 LRR_9: Leucine-rich r 98.9 3.7E-10 8E-15 101.3 1.8 128 360-507 20-148 (175)
38 KOG1259 Nischarin, modulator o 98.9 1.1E-09 2.3E-14 102.5 4.6 218 266-513 174-413 (490)
39 KOG1947 Leucine rich repeat pr 98.7 1E-07 2.2E-12 102.5 14.0 43 500-546 402-446 (482)
40 KOG1947 Leucine rich repeat pr 98.6 4.2E-07 9.1E-12 97.6 15.2 239 300-576 186-446 (482)
41 COG4886 Leucine-rich repeat (L 98.6 2.7E-08 5.8E-13 103.9 4.5 150 275-456 141-290 (394)
42 KOG0532 Leucine-rich repeat (L 98.6 5.9E-10 1.3E-14 112.8 -7.5 184 364-587 80-263 (722)
43 COG4886 Leucine-rich repeat (L 98.6 2.4E-08 5.2E-13 104.2 3.9 196 277-514 96-292 (394)
44 KOG0531 Protein phosphatase 1, 98.6 2E-09 4.4E-14 112.5 -4.4 151 162-343 49-199 (414)
45 KOG2982 Uncharacterized conser 98.6 8.5E-08 1.8E-12 90.0 6.0 220 245-485 70-291 (418)
46 KOG0531 Protein phosphatase 1, 98.5 3.6E-09 7.9E-14 110.7 -4.5 248 160-457 70-319 (414)
47 KOG2982 Uncharacterized conser 98.5 6.6E-08 1.4E-12 90.7 3.9 71 465-543 193-264 (418)
48 KOG1859 Leucine-rich repeat pr 98.5 1.6E-08 3.5E-13 105.3 -1.2 174 161-372 108-292 (1096)
49 KOG1859 Leucine-rich repeat pr 98.4 1.6E-07 3.5E-12 98.0 2.9 180 327-542 106-293 (1096)
50 KOG3665 ZYG-1-like serine/thre 98.3 3.6E-06 7.7E-11 92.2 12.1 34 302-340 60-93 (699)
51 KOG3665 ZYG-1-like serine/thre 98.3 3.1E-06 6.8E-11 92.7 10.6 35 217-256 59-93 (699)
52 KOG0532 Leucine-rich repeat (L 98.3 2.3E-08 4.9E-13 101.7 -6.5 195 248-482 77-271 (722)
53 PLN03150 hypothetical protein; 98.0 8.4E-06 1.8E-10 89.5 6.5 107 361-482 420-526 (623)
54 KOG4658 Apoptotic ATPase [Sign 97.9 1.9E-06 4.2E-11 96.8 -0.9 109 161-285 544-653 (889)
55 PLN03150 hypothetical protein; 97.9 1.9E-05 4.2E-10 86.7 6.2 108 331-454 419-526 (623)
56 PF13855 LRR_8: Leucine rich r 97.8 8.9E-07 1.9E-11 65.1 -3.6 14 471-484 25-38 (61)
57 KOG4579 Leucine-rich repeat (L 97.8 1.2E-05 2.5E-10 67.2 2.6 94 470-580 52-145 (177)
58 PF13855 LRR_8: Leucine rich r 97.8 1.7E-06 3.8E-11 63.5 -2.4 59 360-426 2-60 (61)
59 KOG4658 Apoptotic ATPase [Sign 97.7 1.1E-05 2.3E-10 90.9 1.8 108 245-370 544-653 (889)
60 KOG4242 Predicted myosin-I-bin 97.7 1.7E-05 3.7E-10 79.4 2.0 347 187-552 132-492 (553)
61 KOG2123 Uncharacterized conser 97.6 1.6E-05 3.5E-10 74.3 0.2 114 218-348 19-133 (388)
62 KOG4242 Predicted myosin-I-bin 97.5 5.1E-05 1.1E-09 76.1 3.0 343 162-522 135-491 (553)
63 KOG1644 U2-associated snRNP A' 97.5 3.5E-05 7.6E-10 68.9 1.1 84 360-457 43-127 (233)
64 KOG4579 Leucine-rich repeat (L 97.5 4.2E-05 9.1E-10 64.0 1.3 36 219-259 78-113 (177)
65 KOG2123 Uncharacterized conser 97.4 5.6E-05 1.2E-09 70.8 1.6 105 189-308 18-123 (388)
66 PF12799 LRR_4: Leucine Rich r 97.4 0.00013 2.7E-09 49.2 2.8 37 360-401 2-38 (44)
67 PF12799 LRR_4: Leucine Rich r 97.4 0.00019 4.2E-09 48.3 3.2 37 388-429 2-38 (44)
68 KOG1644 U2-associated snRNP A' 97.2 9.5E-05 2.1E-09 66.2 0.9 67 326-400 60-126 (233)
69 KOG3735 Tropomodulin and leiom 97.0 0.0018 4E-08 62.5 7.3 120 386-505 197-319 (353)
70 KOG3864 Uncharacterized conser 97.0 0.00032 7E-09 62.9 2.0 82 416-508 102-185 (221)
71 KOG3864 Uncharacterized conser 96.9 0.00038 8.2E-09 62.5 1.6 84 443-538 101-186 (221)
72 KOG2739 Leucine-rich acidic nu 96.4 0.001 2.2E-08 62.3 0.5 82 360-453 44-126 (260)
73 smart00368 LRR_RI Leucine rich 96.3 0.0063 1.4E-07 36.4 3.4 24 528-551 2-25 (28)
74 KOG2739 Leucine-rich acidic nu 96.2 0.002 4.2E-08 60.4 1.6 61 359-426 65-127 (260)
75 KOG3735 Tropomodulin and leiom 96.1 0.021 4.7E-07 55.4 7.7 111 414-524 197-310 (353)
76 smart00368 LRR_RI Leucine rich 96.0 0.011 2.4E-07 35.3 3.5 25 499-523 2-26 (28)
77 PRK15386 type III secretion pr 95.9 0.0042 9.2E-08 63.2 2.3 138 186-369 48-187 (426)
78 PF13516 LRR_6: Leucine Rich r 95.8 0.0058 1.3E-07 35.0 1.8 19 530-548 4-22 (24)
79 PRK15386 type III secretion pr 95.7 0.0097 2.1E-07 60.6 3.8 139 157-340 47-187 (426)
80 PF13516 LRR_6: Leucine Rich r 95.6 0.0076 1.7E-07 34.5 1.7 22 499-520 2-23 (24)
81 smart00367 LRR_CC Leucine-rich 93.7 0.076 1.6E-06 31.0 2.6 20 499-518 2-22 (26)
82 smart00367 LRR_CC Leucine-rich 92.3 0.16 3.4E-06 29.6 2.6 20 387-406 2-22 (26)
83 KOG3763 mRNA export factor TAP 86.5 1.9 4.1E-05 45.3 6.8 14 329-342 217-230 (585)
84 PF13504 LRR_7: Leucine rich r 85.5 0.55 1.2E-05 24.2 1.3 11 530-540 3-13 (17)
85 PF00560 LRR_1: Leucine Rich R 84.8 0.21 4.6E-06 27.8 -0.5 15 560-574 2-16 (22)
86 KOG3763 mRNA export factor TAP 81.0 2.4 5.2E-05 44.6 4.9 30 146-175 157-188 (585)
87 PF13306 LRR_5: Leucine rich r 76.8 0.2 4.2E-06 42.7 -3.8 13 215-227 32-44 (129)
88 PF13306 LRR_5: Leucine rich r 75.3 0.14 3.1E-06 43.6 -5.1 13 441-453 33-45 (129)
89 smart00369 LRR_TYP Leucine-ric 74.4 2 4.3E-05 24.8 1.3 20 559-578 3-22 (26)
90 smart00370 LRR Leucine-rich re 74.4 2 4.3E-05 24.8 1.3 20 559-578 3-22 (26)
91 smart00365 LRR_SD22 Leucine-ri 58.0 8.2 0.00018 22.5 1.6 13 529-541 3-15 (26)
92 KOG0473 Leucine-rich repeat pr 39.4 1.4 3E-05 41.1 -5.5 87 327-429 39-125 (326)
93 PF03382 DUF285: Mycoplasma pr 36.6 15 0.00032 30.8 0.6 17 435-452 53-69 (120)
94 KOG0473 Leucine-rich repeat pr 35.0 0.92 2E-05 42.2 -7.3 59 274-342 65-123 (326)
95 smart00364 LRR_BAC Leucine-ric 33.9 26 0.00056 20.5 1.1 13 529-541 3-15 (26)
96 PF07723 LRR_2: Leucine Rich R 25.2 52 0.0011 19.1 1.4 11 473-483 2-12 (26)
No 1
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.97 E-value=4e-28 Score=246.00 Aligned_cols=315 Identities=31% Similarity=0.400 Sum_probs=216.6
Q ss_pred EEEccCCCCChhHHHHHHHHHhcCCCcCEEEecCCCCChHHHHHHHHHHHcCCCccEEEeccCCCC--hhhHHHHHHHHh
Q 007577 222 TLNLSGNPIGDEGVKCLCDILVDNAGVERLQLSSVDLRDEGAKAIAELLKNNSILRVLELNNNMID--YSGFTSLAEALL 299 (597)
Q Consensus 222 ~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~--~~~~~~l~~~l~ 299 (597)
.|+|.++.+++..+..+... ..+|++|++++|.+++.+...++..+...++|++|+++++.+. ..++..++..+.
T Consensus 2 ~l~L~~~~l~~~~~~~~~~~---l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~ 78 (319)
T cd00116 2 QLSLKGELLKTERATELLPK---LLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLT 78 (319)
T ss_pred ccccccCcccccchHHHHHH---HhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHH
Confidence 45666666664444333332 3557777777777777777777777777777777777777766 455666666666
Q ss_pred hCCCccEEEcCCCCCChHHHHHHHHHhhcCCCCCEEEccCCCCChHHHHHHHHhhhcCccccceeeccCCCCChhHHHHH
Q 007577 300 ENSTIRSLHLNGNYGGALGANALAKGLEGNKSLRELHLHGNSIGDEGIRALMSGLSSRKGKLAVLDIGNNSISAKGAFHV 379 (597)
Q Consensus 300 ~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l 379 (597)
.+++|+.|++++|.+.......+...... ++|++|++++|.+++.+...+...+....++|+.|++++|.++..+...+
T Consensus 79 ~~~~L~~L~l~~~~~~~~~~~~~~~l~~~-~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~ 157 (319)
T cd00116 79 KGCGLQELDLSDNALGPDGCGVLESLLRS-SSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEAL 157 (319)
T ss_pred hcCceeEEEccCCCCChhHHHHHHHHhcc-CcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHH
Confidence 67777777777777665444444333333 56888888888777666666665554433577888888887776666666
Q ss_pred HHHHHcCCCCcEEEccCCCCCcHHHHHHHHHHhcCCCccEEEccCCCCChHHHHHHHHHhhcCCCcCEEECcCCCCCHHH
Q 007577 380 AEYIKNCKSLLWINLYMNDIGDEGAEKIADALKQNRTITTIDLGGNNIHSKGASAIARVLKDNSVITSLDLAYNPIGADG 459 (597)
Q Consensus 380 ~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~ 459 (597)
...+..+++|++|++++|.+++.++..++..+..+++|++|++++|.+++.+...+...+..+++|++|++++|.+++.+
T Consensus 158 ~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~~~ 237 (319)
T cd00116 158 AKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDAG 237 (319)
T ss_pred HHHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCchHH
Confidence 67777777788888888888777777777777777788888888888877777777777777777888888888777766
Q ss_pred HHHHHHHHh-hCCCcCEEecCCCCCChhHHHHHHHHHhcCCCccEEEccCCCCChHHHHHHHHHHhhcCccccEEEccCC
Q 007577 460 AKALSEVLK-FHGNINTLKLGWCQIGASGAEFVADMLRYNNTISILDLRANGLRDEGAKCLAQSFKVVNEALTSIDLAFN 538 (597)
Q Consensus 460 ~~~l~~~l~-~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~n~i~~~~~~~l~~~l~~~n~~L~~L~Ls~n 538 (597)
+..+...+. ..+.|++|++++|.+++.+...+...+..+++|+.+++++|.+++.+...++..+....+.|++||+.+|
T Consensus 238 ~~~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 317 (319)
T cd00116 238 AAALASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKFGEEGAQLLAESLLEPGNELESLWVKDD 317 (319)
T ss_pred HHHHHHHHhccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCCCCcHHHHHHHHHHHhhcCCchhhcccCCC
Confidence 666655433 2457777777777777666666666666667777777777777777777776666543356777777666
Q ss_pred CC
Q 007577 539 EI 540 (597)
Q Consensus 539 ~i 540 (597)
.+
T Consensus 318 ~~ 319 (319)
T cd00116 318 SF 319 (319)
T ss_pred CC
Confidence 53
No 2
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.97 E-value=1.7e-27 Score=241.49 Aligned_cols=311 Identities=33% Similarity=0.441 Sum_probs=197.7
Q ss_pred EEEcCCCCCCHHHHHHHHHHhccCCCccEEEeccCCCCHHHHHHHHHHhhhCCCccEEEccCCCCC--hhHHHHHHHHHh
Q 007577 166 SVDMSGRNFGDEGLFFLAESLGYNQTAEEVSFAANGITAAGIKAFDGVLQSNIALKTLNLSGNPIG--DEGVKCLCDILV 243 (597)
Q Consensus 166 ~L~Ls~~~l~~~~~~~l~~~l~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~--~~~~~~l~~~l~ 243 (597)
.|+|..+.+.+..+..+... ..+|++|++++|.+++.+...+...+...++|++|+++++.+. ..++..++..+.
T Consensus 2 ~l~L~~~~l~~~~~~~~~~~---l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~ 78 (319)
T cd00116 2 QLSLKGELLKTERATELLPK---LLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLT 78 (319)
T ss_pred ccccccCcccccchHHHHHH---HhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHH
Confidence 46677777765554444433 3458888888888888777777777777778888888887776 456666667777
Q ss_pred cCCCcCEEEecCCCCChHHHHHHHHHHHcCCCccEEEeccCCCChhhHHHHHHHHhhC-CCccEEEcCCCCCChHHHHHH
Q 007577 244 DNAGVERLQLSSVDLRDEGAKAIAELLKNNSILRVLELNNNMIDYSGFTSLAEALLEN-STIRSLHLNGNYGGALGANAL 322 (597)
Q Consensus 244 ~~~~L~~L~Ls~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~-~~L~~L~L~~n~i~~~~~~~l 322 (597)
.+++|++|++++|.+.......+...... ++|++|++++|++++.+...+...+..+ ++|++|++++|.++..+...+
T Consensus 79 ~~~~L~~L~l~~~~~~~~~~~~~~~l~~~-~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~ 157 (319)
T cd00116 79 KGCGLQELDLSDNALGPDGCGVLESLLRS-SSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEAL 157 (319)
T ss_pred hcCceeEEEccCCCCChhHHHHHHHHhcc-CcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHH
Confidence 77788888888888776555555555444 5688888888887777666666666666 677777777777765555555
Q ss_pred HHHhhcCCCCCEEEccCCCCChHHHHHHHHhhhcCccccceeeccCCCCChhHHHHHHHHHHcCCCCcEEEccCCCCCcH
Q 007577 323 AKGLEGNKSLRELHLHGNSIGDEGIRALMSGLSSRKGKLAVLDIGNNSISAKGAFHVAEYIKNCKSLLWINLYMNDIGDE 402 (597)
Q Consensus 323 ~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~ 402 (597)
...+..++.|++|++++|.+++.++..+...+... ++|+.|++++|.+++.+...+...+..+++|++|++++|.+++.
T Consensus 158 ~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~-~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~~ 236 (319)
T cd00116 158 AKALRANRDLKELNLANNGIGDAGIRALAEGLKAN-CNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDA 236 (319)
T ss_pred HHHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhC-CCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCchH
Confidence 55666666677777777766665555554444322 35666666666666555555555555566666666666666655
Q ss_pred HHHHHHHHHhc-CCCccEEEccCCCCChHHHHHHHHHhhcCCCcCEEECcCCCCCHHHHHHHHHHHhhC-CCcCEEecCC
Q 007577 403 GAEKIADALKQ-NRTITTIDLGGNNIHSKGASAIARVLKDNSVITSLDLAYNPIGADGAKALSEVLKFH-GNINTLKLGW 480 (597)
Q Consensus 403 ~~~~l~~~l~~-~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~-~~L~~L~L~~ 480 (597)
++..+...+.. .+.|++|++++|.+++.+...+...+..+++|+++++++|.+++++...+...+... +.|++|++.+
T Consensus 237 ~~~~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 316 (319)
T cd00116 237 GAAALASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKFGEEGAQLLAESLLEPGNELESLWVKD 316 (319)
T ss_pred HHHHHHHHHhccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCCCCcHHHHHHHHHHHhhcCCchhhcccCC
Confidence 55555444322 345566666666555555555555555555555555555555555555555554444 4555555544
Q ss_pred C
Q 007577 481 C 481 (597)
Q Consensus 481 n 481 (597)
+
T Consensus 317 ~ 317 (319)
T cd00116 317 D 317 (319)
T ss_pred C
Confidence 4
No 3
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.97 E-value=2.7e-32 Score=271.40 Aligned_cols=399 Identities=18% Similarity=0.155 Sum_probs=301.0
Q ss_pred CCCccccccCcccccccchhhhHHHHHHHHHHHHhcCCCcEEEcCCCCCCHHHHHHHHHHhccCCCccEEEeccCCCCHH
Q 007577 126 EGMNWSVGAGTNLLSGFTGKLFRESKQTLNEFAKELRAFSSVDMSGRNFGDEGLFFLAESLGYNQTAEEVSFAANGITAA 205 (597)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~l~~~l~~~~~L~~L~L~~~~l~~~ 205 (597)
++..|.|.. .+++|.+..+...+...+..++ .+..+.||+++|.+.+.++ ..|..+++|+++++..|.++
T Consensus 46 cpa~c~c~~--~lldcs~~~lea~~~~~l~g~l--p~~t~~LdlsnNkl~~id~----~~f~nl~nLq~v~l~~N~Lt-- 115 (873)
T KOG4194|consen 46 CPATCPCNT--RLLDCSDRELEAIDKSRLKGFL--PSQTQTLDLSNNKLSHIDF----EFFYNLPNLQEVNLNKNELT-- 115 (873)
T ss_pred CCCcCCCCc--eeeecCccccccccccccCCcC--ccceeeeeccccccccCcH----HHHhcCCcceeeeeccchhh--
Confidence 455666653 3466666666665555444442 3456789999999988764 34567799999999999876
Q ss_pred HHHHHHHHhhhCCCccEEEccCCCCChhHHHHHHHHHhcCCCcCEEEecCCCCChHHHHHHHHHHHcCCCccEEEeccCC
Q 007577 206 GIKAFDGVLQSNIALKTLNLSGNPIGDEGVKCLCDILVDNAGVERLQLSSVDLRDEGAKAIAELLKNNSILRVLELNNNM 285 (597)
Q Consensus 206 ~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~ 285 (597)
.++.......+|+.|+|.+|.|.......+... +.|+.|||+.|.|+......++.. .++++|+|++|+
T Consensus 116 ---~IP~f~~~sghl~~L~L~~N~I~sv~se~L~~l----~alrslDLSrN~is~i~~~sfp~~----~ni~~L~La~N~ 184 (873)
T KOG4194|consen 116 ---RIPRFGHESGHLEKLDLRHNLISSVTSEELSAL----PALRSLDLSRNLISEIPKPSFPAK----VNIKKLNLASNR 184 (873)
T ss_pred ---hcccccccccceeEEeeeccccccccHHHHHhH----hhhhhhhhhhchhhcccCCCCCCC----CCceEEeecccc
Confidence 345554555679999999999988866666554 899999999999887644444443 689999999999
Q ss_pred CChhhHHHHHHHHhhCCCccEEEcCCCCCChHHHHHHHHHhhcCCCCCEEEccCCCCChHHHHHHHHhhhcCccccceee
Q 007577 286 IDYSGFTSLAEALLENSTIRSLHLNGNYGGALGANALAKGLEGNKSLRELHLHGNSIGDEGIRALMSGLSSRKGKLAVLD 365 (597)
Q Consensus 286 i~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~ 365 (597)
|++-+.. .|..+.+|..|.|+.|.++..+. ..|.+++.|+.|+|..|.|.....-.+ ..+++|+.|.
T Consensus 185 It~l~~~----~F~~lnsL~tlkLsrNrittLp~----r~Fk~L~~L~~LdLnrN~irive~ltF-----qgL~Sl~nlk 251 (873)
T KOG4194|consen 185 ITTLETG----HFDSLNSLLTLKLSRNRITTLPQ----RSFKRLPKLESLDLNRNRIRIVEGLTF-----QGLPSLQNLK 251 (873)
T ss_pred ccccccc----cccccchheeeecccCcccccCH----HHhhhcchhhhhhccccceeeehhhhh-----cCchhhhhhh
Confidence 9875533 34456799999999999998877 557789999999999998865322222 4566899999
Q ss_pred ccCCCCChhHHHHHHHHHHcCCCCcEEEccCCCCCcHHHHHHHHHHhcCCCccEEEccCCCCChHHHHHHHHHhhcCCCc
Q 007577 366 IGNNSISAKGAFHVAEYIKNCKSLLWINLYMNDIGDEGAEKIADALKQNRTITTIDLGGNNIHSKGASAIARVLKDNSVI 445 (597)
Q Consensus 366 Ls~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L 445 (597)
|..|+|..- -...|..+.++++|+|+.|++.... ..++..++.|+.|+|+.|.|....+..+.- |++|
T Consensus 252 lqrN~I~kL----~DG~Fy~l~kme~l~L~~N~l~~vn----~g~lfgLt~L~~L~lS~NaI~rih~d~Wsf----tqkL 319 (873)
T KOG4194|consen 252 LQRNDISKL----DDGAFYGLEKMEHLNLETNRLQAVN----EGWLFGLTSLEQLDLSYNAIQRIHIDSWSF----TQKL 319 (873)
T ss_pred hhhcCcccc----cCcceeeecccceeecccchhhhhh----cccccccchhhhhccchhhhheeecchhhh----cccc
Confidence 999988762 1235678899999999999987642 234556899999999999887766555543 5999
Q ss_pred CEEECcCCCCCHHHHHHHHHHHhhCCCcCEEecCCCCCChhHHHHHHHHHhcCCCccEEEccCCCCCh---HHHHHHHHH
Q 007577 446 TSLDLAYNPIGADGAKALSEVLKFHGNINTLKLGWCQIGASGAEFVADMLRYNNTISILDLRANGLRD---EGAKCLAQS 522 (597)
Q Consensus 446 ~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~n~i~~---~~~~~l~~~ 522 (597)
++|+|++|.|+......+... ..|++|+|+.|.|+......+.. .++|++|||++|.|.- ++...+..+
T Consensus 320 ~~LdLs~N~i~~l~~~sf~~L----~~Le~LnLs~Nsi~~l~e~af~~----lssL~~LdLr~N~ls~~IEDaa~~f~gl 391 (873)
T KOG4194|consen 320 KELDLSSNRITRLDEGSFRVL----SQLEELNLSHNSIDHLAEGAFVG----LSSLHKLDLRSNELSWCIEDAAVAFNGL 391 (873)
T ss_pred eeEeccccccccCChhHHHHH----HHhhhhcccccchHHHHhhHHHH----hhhhhhhcCcCCeEEEEEecchhhhccc
Confidence 999999999887655555444 79999999999997665444443 4899999999996642 234444443
Q ss_pred HhhcCccccEEEccCCCCChHHHHHHHHHHHhCCCCceeEEEcccCccchhhHHHHHHHHHHHhhhh
Q 007577 523 FKVVNEALTSIDLAFNEIRDDGAFAIAQALKANEDVAVTSLNLANNFLTKFGQSALTDAKDLVYEMS 589 (597)
Q Consensus 523 l~~~n~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~N~i~~~~~~~l~~~~~~~~~l~ 589 (597)
+.|+.|++.+|++.....+++... ..|++|||.+|.|..+-..+|..+.-....|+
T Consensus 392 -----~~LrkL~l~gNqlk~I~krAfsgl------~~LE~LdL~~NaiaSIq~nAFe~m~Lk~Lv~n 447 (873)
T KOG4194|consen 392 -----PSLRKLRLTGNQLKSIPKRAFSGL------EALEHLDLGDNAIASIQPNAFEPMELKELVMN 447 (873)
T ss_pred -----hhhhheeecCceeeecchhhhccC------cccceecCCCCcceeecccccccchhhhhhhc
Confidence 779999999999998877777665 34999999999999999999998833333333
No 4
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.95 E-value=3.4e-29 Score=290.69 Aligned_cols=367 Identities=19% Similarity=0.203 Sum_probs=179.1
Q ss_pred HHHhcCCCcEEEcCCCCCCHHHHHHHHHHhccCCCccEEEeccCCCCHHHHHHHHHHhhhCCCccEEEccCCCCChhHHH
Q 007577 157 FAKELRAFSSVDMSGRNFGDEGLFFLAESLGYNQTAEEVSFAANGITAAGIKAFDGVLQSNIALKTLNLSGNPIGDEGVK 236 (597)
Q Consensus 157 ~~~~~~~L~~L~Ls~~~l~~~~~~~l~~~l~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~ 236 (597)
.+..+++|++|+|++|.+... ++..+..+++|+.|++++|.++.. ++..+..+++|++|++++|.+...
T Consensus 159 ~~~~l~~L~~L~L~~n~l~~~----~p~~~~~l~~L~~L~L~~n~l~~~----~p~~l~~l~~L~~L~L~~n~l~~~--- 227 (968)
T PLN00113 159 DIGSFSSLKVLDLGGNVLVGK----IPNSLTNLTSLEFLTLASNQLVGQ----IPRELGQMKSLKWIYLGYNNLSGE--- 227 (968)
T ss_pred HHhcCCCCCEEECccCccccc----CChhhhhCcCCCeeeccCCCCcCc----CChHHcCcCCccEEECcCCccCCc---
Confidence 345667777777777765432 344555667777777777765432 233344556677777766666543
Q ss_pred HHHHHHhcCCCcCEEEecCCCCChHHHHHHHHHHHcCCCccEEEeccCCCChhhHHHHHHHHhhCCCccEEEcCCCCCCh
Q 007577 237 CLCDILVDNAGVERLQLSSVDLRDEGAKAIAELLKNNSILRVLELNNNMIDYSGFTSLAEALLENSTIRSLHLNGNYGGA 316 (597)
Q Consensus 237 ~l~~~l~~~~~L~~L~Ls~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~ 316 (597)
++..+..+++|++|++++|.++.. ++..+.++++|++|++++|.+.+ .++..+..+++|++|++++|.+..
T Consensus 228 -~p~~l~~l~~L~~L~L~~n~l~~~----~p~~l~~l~~L~~L~L~~n~l~~----~~p~~l~~l~~L~~L~Ls~n~l~~ 298 (968)
T PLN00113 228 -IPYEIGGLTSLNHLDLVYNNLTGP----IPSSLGNLKNLQYLFLYQNKLSG----PIPPSIFSLQKLISLDLSDNSLSG 298 (968)
T ss_pred -CChhHhcCCCCCEEECcCceeccc----cChhHhCCCCCCEEECcCCeeec----cCchhHhhccCcCEEECcCCeecc
Confidence 333344456666666666665543 33344445666666666665542 123334445555555555555432
Q ss_pred HHHHHHHHHhhcCCCCCEEEccCCCCChHHHHHHHHhhhcCccccceeeccCCCCChhHHHHHHHHHHcCCCCcEEEccC
Q 007577 317 LGANALAKGLEGNKSLRELHLHGNSIGDEGIRALMSGLSSRKGKLAVLDIGNNSISAKGAFHVAEYIKNCKSLLWINLYM 396 (597)
Q Consensus 317 ~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~ 396 (597)
. ++..+..+++|+.|++++|.+.+.....+ ..+++|+.|++++|.++.. ++..+..+++|+.|++++
T Consensus 299 ~----~p~~~~~l~~L~~L~l~~n~~~~~~~~~~-----~~l~~L~~L~L~~n~l~~~----~p~~l~~~~~L~~L~Ls~ 365 (968)
T PLN00113 299 E----IPELVIQLQNLEILHLFSNNFTGKIPVAL-----TSLPRLQVLQLWSNKFSGE----IPKNLGKHNNLTVLDLST 365 (968)
T ss_pred C----CChhHcCCCCCcEEECCCCccCCcCChhH-----hcCCCCCEEECcCCCCcCc----CChHHhCCCCCcEEECCC
Confidence 2 11233445555555555554433211111 1223444444444444431 333344444444444444
Q ss_pred CCCCcHHHH--------------------HHHHHHhcCCCccEEEccCCCCChHHHHHHHHHhhcCCCcCEEECcCCCCC
Q 007577 397 NDIGDEGAE--------------------KIADALKQNRTITTIDLGGNNIHSKGASAIARVLKDNSVITSLDLAYNPIG 456 (597)
Q Consensus 397 n~l~~~~~~--------------------~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~ 456 (597)
|.++..... .++..+..+++|+.|++++|.++... +..+..++.|+.|++++|.++
T Consensus 366 n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~L~~n~l~~~~----p~~~~~l~~L~~L~Ls~N~l~ 441 (968)
T PLN00113 366 NNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGEL----PSEFTKLPLVYFLDISNNNLQ 441 (968)
T ss_pred CeeEeeCChhHhCcCCCCEEECcCCEecccCCHHHhCCCCCCEEECcCCEeeeEC----ChhHhcCCCCCEEECcCCccc
Confidence 433321000 02223333444555555555444321 112223344444444444443
Q ss_pred HHHHHHHHHHHhhC-----------------------CCcCEEecCCCCCChhHHHHHHHHHhcCCCccEEEccCCCCCh
Q 007577 457 ADGAKALSEVLKFH-----------------------GNINTLKLGWCQIGASGAEFVADMLRYNNTISILDLRANGLRD 513 (597)
Q Consensus 457 ~~~~~~l~~~l~~~-----------------------~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~n~i~~ 513 (597)
.... ..+..+ ++|++|++++|+++...+..+. .+++|+.|++++|.+..
T Consensus 442 ~~~~----~~~~~l~~L~~L~L~~n~~~~~~p~~~~~~~L~~L~ls~n~l~~~~~~~~~----~l~~L~~L~Ls~N~l~~ 513 (968)
T PLN00113 442 GRIN----SRKWDMPSLQMLSLARNKFFGGLPDSFGSKRLENLDLSRNQFSGAVPRKLG----SLSELMQLKLSENKLSG 513 (968)
T ss_pred CccC----hhhccCCCCcEEECcCceeeeecCcccccccceEEECcCCccCCccChhhh----hhhccCEEECcCCccee
Confidence 2211 111112 3455555555555443333222 23566666666666655
Q ss_pred HHHHHHHHHHhhcCccccEEEccCCCCChHHHHHHHHHHHhCCCCceeEEEcccCccchhhHHHHH
Q 007577 514 EGAKCLAQSFKVVNEALTSIDLAFNEIRDDGAFAIAQALKANEDVAVTSLNLANNFLTKFGQSALT 579 (597)
Q Consensus 514 ~~~~~l~~~l~~~n~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~N~i~~~~~~~l~ 579 (597)
..+..+..+ ++|++|+|++|.++...+..+... .+|+.|+|++|.++......+.
T Consensus 514 ~~p~~~~~l-----~~L~~L~Ls~N~l~~~~p~~~~~l------~~L~~L~Ls~N~l~~~~p~~l~ 568 (968)
T PLN00113 514 EIPDELSSC-----KKLVSLDLSHNQLSGQIPASFSEM------PVLSQLDLSQNQLSGEIPKNLG 568 (968)
T ss_pred eCChHHcCc-----cCCCEEECCCCcccccCChhHhCc------ccCCEEECCCCcccccCChhHh
Confidence 444444332 556777777776665555555443 2377777777777654444443
No 5
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.95 E-value=7.4e-29 Score=287.81 Aligned_cols=361 Identities=18% Similarity=0.199 Sum_probs=165.8
Q ss_pred cCCCcEEEcCCCCCCHHHHHHHHHHhccCCCccEEEeccCCCCHHHHHHHHHHhhhCCCccEEEccCCCCChhHHHHHHH
Q 007577 161 LRAFSSVDMSGRNFGDEGLFFLAESLGYNQTAEEVSFAANGITAAGIKAFDGVLQSNIALKTLNLSGNPIGDEGVKCLCD 240 (597)
Q Consensus 161 ~~~L~~L~Ls~~~l~~~~~~~l~~~l~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~ 240 (597)
+++|++|+|++|.+... ++..+..+++|+.|++++|.+... ++..+.++++|++|++++|.+... ++.
T Consensus 139 l~~L~~L~Ls~n~~~~~----~p~~~~~l~~L~~L~L~~n~l~~~----~p~~~~~l~~L~~L~L~~n~l~~~----~p~ 206 (968)
T PLN00113 139 IPNLETLDLSNNMLSGE----IPNDIGSFSSLKVLDLGGNVLVGK----IPNSLTNLTSLEFLTLASNQLVGQ----IPR 206 (968)
T ss_pred cCCCCEEECcCCccccc----CChHHhcCCCCCEEECccCccccc----CChhhhhCcCCCeeeccCCCCcCc----CCh
Confidence 34444444444444321 233344445555555555544321 222233444555555555554332 223
Q ss_pred HHhcCCCcCEEEecCCCCChHHHHHHHHHHHcCCCccEEEeccCCCChhhHHHHHHHHhhCCCccEEEcCCCCCChHHHH
Q 007577 241 ILVDNAGVERLQLSSVDLRDEGAKAIAELLKNNSILRVLELNNNMIDYSGFTSLAEALLENSTIRSLHLNGNYGGALGAN 320 (597)
Q Consensus 241 ~l~~~~~L~~L~Ls~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~ 320 (597)
.+..+++|+.|++++|.++.. ++..+.++++|++|++++|.++. .++..+..+++|++|++++|.+....
T Consensus 207 ~l~~l~~L~~L~L~~n~l~~~----~p~~l~~l~~L~~L~L~~n~l~~----~~p~~l~~l~~L~~L~L~~n~l~~~~-- 276 (968)
T PLN00113 207 ELGQMKSLKWIYLGYNNLSGE----IPYEIGGLTSLNHLDLVYNNLTG----PIPSSLGNLKNLQYLFLYQNKLSGPI-- 276 (968)
T ss_pred HHcCcCCccEEECcCCccCCc----CChhHhcCCCCCEEECcCceecc----ccChhHhCCCCCCEEECcCCeeeccC--
Confidence 333445555555555554432 22333444555555555555432 23334445555555555555543221
Q ss_pred HHHHHhhcCCCCCEEEccCCCCChHHHHHHHHhhhcCccccceeeccCCCCChhHHHHHHHHHHcCCCCcEEEccCCCCC
Q 007577 321 ALAKGLEGNKSLRELHLHGNSIGDEGIRALMSGLSSRKGKLAVLDIGNNSISAKGAFHVAEYIKNCKSLLWINLYMNDIG 400 (597)
Q Consensus 321 ~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~ 400 (597)
+..+.++++|++|++++|.+.......+ ..+++|+.|++++|.++.. ++..+..+++|+.|++++|.++
T Consensus 277 --p~~l~~l~~L~~L~Ls~n~l~~~~p~~~-----~~l~~L~~L~l~~n~~~~~----~~~~~~~l~~L~~L~L~~n~l~ 345 (968)
T PLN00113 277 --PPSIFSLQKLISLDLSDNSLSGEIPELV-----IQLQNLEILHLFSNNFTGK----IPVALTSLPRLQVLQLWSNKFS 345 (968)
T ss_pred --chhHhhccCcCEEECcCCeeccCCChhH-----cCCCCCcEEECCCCccCCc----CChhHhcCCCCCEEECcCCCCc
Confidence 1223445555566665555443211111 2334566666666655542 4445556666666666666555
Q ss_pred cHHHHHHHHHHhcCCCccEEEccCCCCChHHHHHHHHHhhcCCCcCEEECcCCCCCHHHHHHHHHHHhhCCCcCEEecCC
Q 007577 401 DEGAEKIADALKQNRTITTIDLGGNNIHSKGASAIARVLKDNSVITSLDLAYNPIGADGAKALSEVLKFHGNINTLKLGW 480 (597)
Q Consensus 401 ~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~L~~ 480 (597)
.. ++..+..+++|+.|++++|.++.... ..+..+++|+.|++++|.+... +...+..+++|+.|++++
T Consensus 346 ~~----~p~~l~~~~~L~~L~Ls~n~l~~~~p----~~~~~~~~L~~L~l~~n~l~~~----~p~~~~~~~~L~~L~L~~ 413 (968)
T PLN00113 346 GE----IPKNLGKHNNLTVLDLSTNNLTGEIP----EGLCSSGNLFKLILFSNSLEGE----IPKSLGACRSLRRVRLQD 413 (968)
T ss_pred Cc----CChHHhCCCCCcEEECCCCeeEeeCC----hhHhCcCCCCEEECcCCEeccc----CCHHHhCCCCCCEEECcC
Confidence 43 33444455666666666665543211 1122224444444444443322 122233445566666666
Q ss_pred CCCChhHHHHHHHHHhcCCCccEEEccCCCCChHHHHHHHHH--------------------HhhcCccccEEEccCCCC
Q 007577 481 CQIGASGAEFVADMLRYNNTISILDLRANGLRDEGAKCLAQS--------------------FKVVNEALTSIDLAFNEI 540 (597)
Q Consensus 481 n~i~~~~~~~l~~~l~~~~~L~~L~l~~n~i~~~~~~~l~~~--------------------l~~~n~~L~~L~Ls~n~i 540 (597)
|.++...+.. +..++.|+.|++++|.+++.....+... +. .++|+.|++++|++
T Consensus 414 n~l~~~~p~~----~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~~~--~~~L~~L~ls~n~l 487 (968)
T PLN00113 414 NSFSGELPSE----FTKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLPDSFG--SKRLENLDLSRNQF 487 (968)
T ss_pred CEeeeECChh----HhcCCCCCEEECcCCcccCccChhhccCCCCcEEECcCceeeeecCcccc--cccceEEECcCCcc
Confidence 6554332222 2233555555555554443322222111 00 13455566666655
Q ss_pred ChHHHHHHHHHHHhCCCCceeEEEcccCccchhhHHHH
Q 007577 541 RDDGAFAIAQALKANEDVAVTSLNLANNFLTKFGQSAL 578 (597)
Q Consensus 541 ~~~~~~~l~~~l~~~~~~~L~~L~L~~N~i~~~~~~~l 578 (597)
+...+..+... .+|+.|+|++|.++......+
T Consensus 488 ~~~~~~~~~~l------~~L~~L~Ls~N~l~~~~p~~~ 519 (968)
T PLN00113 488 SGAVPRKLGSL------SELMQLKLSENKLSGEIPDEL 519 (968)
T ss_pred CCccChhhhhh------hccCEEECcCCcceeeCChHH
Confidence 54444444333 126666666666654444433
No 6
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.95 E-value=2e-30 Score=258.10 Aligned_cols=352 Identities=21% Similarity=0.214 Sum_probs=265.2
Q ss_pred HHHHhcCCCcEEEcCCCCCCHHHHHHHHHHhccCCCccEEEeccCCCCHHHHHHHHHHhhhCCCccEEEccCCCCChhHH
Q 007577 156 EFAKELRAFSSVDMSGRNFGDEGLFFLAESLGYNQTAEEVSFAANGITAAGIKAFDGVLQSNIALKTLNLSGNPIGDEGV 235 (597)
Q Consensus 156 ~~~~~~~~L~~L~Ls~~~l~~~~~~~l~~~l~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~ 235 (597)
.++.++++|++++|..|.++. ++.......+|+.|+|.+|.|+...-+.+.. .+.|++||||.|.|.....
T Consensus 96 ~~f~nl~nLq~v~l~~N~Lt~-----IP~f~~~sghl~~L~L~~N~I~sv~se~L~~----l~alrslDLSrN~is~i~~ 166 (873)
T KOG4194|consen 96 EFFYNLPNLQEVNLNKNELTR-----IPRFGHESGHLEKLDLRHNLISSVTSEELSA----LPALRSLDLSRNLISEIPK 166 (873)
T ss_pred HHHhcCCcceeeeeccchhhh-----cccccccccceeEEeeeccccccccHHHHHh----HhhhhhhhhhhchhhcccC
Confidence 566789999999999997765 4444444668999999999988766555543 3669999999999877655
Q ss_pred HHHHHHHhcCCCcCEEEecCCCCChHHHHHHHHHHHcCCCccEEEeccCCCChhhHHHHHHHHhhCCCccEEEcCCCCCC
Q 007577 236 KCLCDILVDNAGVERLQLSSVDLRDEGAKAIAELLKNNSILRVLELNNNMIDYSGFTSLAEALLENSTIRSLHLNGNYGG 315 (597)
Q Consensus 236 ~~l~~~l~~~~~L~~L~Ls~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~i~ 315 (597)
..++.. .++++|+|++|.|++.+...|..+ .+|..|.|+.|+|+. .-...|.++++|+.|+|..|.|.
T Consensus 167 ~sfp~~----~ni~~L~La~N~It~l~~~~F~~l----nsL~tlkLsrNritt----Lp~r~Fk~L~~L~~LdLnrN~ir 234 (873)
T KOG4194|consen 167 PSFPAK----VNIKKLNLASNRITTLETGHFDSL----NSLLTLKLSRNRITT----LPQRSFKRLPKLESLDLNRNRIR 234 (873)
T ss_pred CCCCCC----CCceEEeecccccccccccccccc----chheeeecccCcccc----cCHHHhhhcchhhhhhcccccee
Confidence 444443 789999999999999877777665 789999999999963 22345556899999999999886
Q ss_pred hHHHHHHHHHhhcCCCCCEEEccCCCCChHHHHHHHHhhhcCccccceeeccCCCCChhHHHHHHHHHHcCCCCcEEEcc
Q 007577 316 ALGANALAKGLEGNKSLRELHLHGNSIGDEGIRALMSGLSSRKGKLAVLDIGNNSISAKGAFHVAEYIKNCKSLLWINLY 395 (597)
Q Consensus 316 ~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~Ls 395 (597)
.... -.|.++++|+.|.|..|+|.. +-.+.+-.+.++++|+|..|++... -..++-++..|+.|+|+
T Consensus 235 ive~----ltFqgL~Sl~nlklqrN~I~k-----L~DG~Fy~l~kme~l~L~~N~l~~v----n~g~lfgLt~L~~L~lS 301 (873)
T KOG4194|consen 235 IVEG----LTFQGLPSLQNLKLQRNDISK-----LDDGAFYGLEKMEHLNLETNRLQAV----NEGWLFGLTSLEQLDLS 301 (873)
T ss_pred eehh----hhhcCchhhhhhhhhhcCccc-----ccCcceeeecccceeecccchhhhh----hcccccccchhhhhccc
Confidence 5422 347789999999999998765 4445555666899999999988873 33456678899999999
Q ss_pred CCCCCcHHHHHHHHHHhcCCCccEEEccCCCCChHHHHHHHHHhhcCCCcCEEECcCCCCCHHHHHHHHHHHhhCCCcCE
Q 007577 396 MNDIGDEGAEKIADALKQNRTITTIDLGGNNIHSKGASAIARVLKDNSVITSLDLAYNPIGADGAKALSEVLKFHGNINT 475 (597)
Q Consensus 396 ~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~ 475 (597)
+|.|... -.+.+..+++|+.|+|+.|+|+......+..+ ..|++|+|+.|.|+...-..+ ....+|++
T Consensus 302 ~NaI~ri----h~d~WsftqkL~~LdLs~N~i~~l~~~sf~~L----~~Le~LnLs~Nsi~~l~e~af----~~lssL~~ 369 (873)
T KOG4194|consen 302 YNAIQRI----HIDSWSFTQKLKELDLSSNRITRLDEGSFRVL----SQLEELNLSHNSIDHLAEGAF----VGLSSLHK 369 (873)
T ss_pred hhhhhee----ecchhhhcccceeEeccccccccCChhHHHHH----HHhhhhcccccchHHHHhhHH----HHhhhhhh
Confidence 9987654 23456667899999999999988777777666 889999999998865433333 33479999
Q ss_pred EecCCCCCChhHHHHHHHHHhcCCCccEEEccCCCCChHHHHHHHHHHhhcCccccEEEccCCCCChHHHHHHHHHHHhC
Q 007577 476 LKLGWCQIGASGAEFVADMLRYNNTISILDLRANGLRDEGAKCLAQSFKVVNEALTSIDLAFNEIRDDGAFAIAQALKAN 555 (597)
Q Consensus 476 L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~n~i~~~~~~~l~~~l~~~n~~L~~L~Ls~n~i~~~~~~~l~~~l~~~ 555 (597)
|+|+.|.++... +.-+..+..++.|+.|++.+|+|....-.++... +.|++|||.+|.|....+.+|... .
T Consensus 370 LdLr~N~ls~~I-EDaa~~f~gl~~LrkL~l~gNqlk~I~krAfsgl-----~~LE~LdL~~NaiaSIq~nAFe~m-~-- 440 (873)
T KOG4194|consen 370 LDLRSNELSWCI-EDAAVAFNGLPSLRKLRLTGNQLKSIPKRAFSGL-----EALEHLDLGDNAIASIQPNAFEPM-E-- 440 (873)
T ss_pred hcCcCCeEEEEE-ecchhhhccchhhhheeecCceeeecchhhhccC-----cccceecCCCCcceeecccccccc-h--
Confidence 999999865311 1122334456899999999999888877777665 779999999998887777777554 2
Q ss_pred CCCceeEEEcc
Q 007577 556 EDVAVTSLNLA 566 (597)
Q Consensus 556 ~~~~L~~L~L~ 566 (597)
|++|-+.
T Consensus 441 ----Lk~Lv~n 447 (873)
T KOG4194|consen 441 ----LKELVMN 447 (873)
T ss_pred ----hhhhhhc
Confidence 6666654
No 7
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=99.95 E-value=2.1e-26 Score=217.35 Aligned_cols=349 Identities=25% Similarity=0.327 Sum_probs=250.6
Q ss_pred HHHHhhhCCCccEEEccCCCCChhHHHHHHHHHhcCCCcCEEEecCCCCC------hHHHHHHHHHHHcCCCccEEEecc
Q 007577 210 FDGVLQSNIALKTLNLSGNPIGDEGVKCLCDILVDNAGVERLQLSSVDLR------DEGAKAIAELLKNNSILRVLELNN 283 (597)
Q Consensus 210 l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~~~l~------~~~~~~l~~~l~~~~~L~~L~Ls~ 283 (597)
+...+.....+++++||+|.++......++..+.+.++|+..++++-... ...+..+...+..++.|++||||+
T Consensus 22 v~~~~~~~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSD 101 (382)
T KOG1909|consen 22 VEEELEPMDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSD 101 (382)
T ss_pred HHHHhcccCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeeccc
Confidence 33333444455555555555555555555555555555555555543211 122344555555666677777777
Q ss_pred CCCChhhHHHHHHHHhhCCCccEEEcCCCCCChHHHHHHHHHhhcCCCCCEEEccCCCCChHHHHHHHHhhhcCccccce
Q 007577 284 NMIDYSGFTSLAEALLENSTIRSLHLNGNYGGALGANALAKGLEGNKSLRELHLHGNSIGDEGIRALMSGLSSRKGKLAV 363 (597)
Q Consensus 284 n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~ 363 (597)
|-++..++..+...+.++..|++|.|.+|.++..+...+..++..+. .++ .....++|+.
T Consensus 102 NA~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~--------~~k------------k~~~~~~Lrv 161 (382)
T KOG1909|consen 102 NAFGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELA--------VNK------------KAASKPKLRV 161 (382)
T ss_pred cccCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHH--------HHh------------ccCCCcceEE
Confidence 77777766666666666667777777777666666655554433221 000 0023347888
Q ss_pred eeccCCCCChhHHHHHHHHHHcCCCCcEEEccCCCCCcHHHHHHHHHHhcCCCccEEEccCCCCChHHHHHHHHHhhcCC
Q 007577 364 LDIGNNSISAKGAFHVAEYIKNCKSLLWINLYMNDIGDEGAEKIADALKQNRTITTIDLGGNNIHSKGASAIARVLKDNS 443 (597)
Q Consensus 364 L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~ 443 (597)
+...+|++-+.+...++..++..+.|+.+.++.|.|..+|+..+..++..|++|+.|||.+|-++..+...++..++..+
T Consensus 162 ~i~~rNrlen~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~ 241 (382)
T KOG1909|consen 162 FICGRNRLENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWP 241 (382)
T ss_pred EEeeccccccccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccc
Confidence 88888888888888888888888899999999998888888888888888999999999999999999889999888888
Q ss_pred CcCEEECcCCCCCHHHHHHHHHHHhh-CCCcCEEecCCCCCChhHHHHHHHHHhcCCCccEEEccCCCC--ChHHHHHHH
Q 007577 444 VITSLDLAYNPIGADGAKALSEVLKF-HGNINTLKLGWCQIGASGAEFVADMLRYNNTISILDLRANGL--RDEGAKCLA 520 (597)
Q Consensus 444 ~L~~L~Ls~n~i~~~~~~~l~~~l~~-~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~n~i--~~~~~~~l~ 520 (597)
.|++|++++|.+.+.|...+.+.+.. .++|++|.+.+|.|+..+...++.++..-+.|+.|+|++|.+ .+++...+.
T Consensus 242 ~L~El~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l~e~de~i~ei~ 321 (382)
T KOG1909|consen 242 HLRELNLGDCLLENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRLGEKDEGIDEIA 321 (382)
T ss_pred hheeecccccccccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCcccccccchhHHHHH
Confidence 99999999999988888888777654 688999999999998888888888887788999999999988 777777777
Q ss_pred HHHhhcCccccEEEccCCCCChHHHHHHHHHHHhCCCCceeEEEcccCccchhhHHHHHH
Q 007577 521 QSFKVVNEALTSIDLAFNEIRDDGAFAIAQALKANEDVAVTSLNLANNFLTKFGQSALTD 580 (597)
Q Consensus 521 ~~l~~~n~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~N~i~~~~~~~l~~ 580 (597)
..+......+...+-+.+.+.+++-............ -+.++..++.+.+.+.+.+..
T Consensus 322 ~~~~~~~~~~~~~~~s~e~l~~eg~e~e~~~~~~~~t--~~e~~ed~e~ie~e~~ee~~e 379 (382)
T KOG1909|consen 322 SKFDTAHVLLEDIDDSEEELEREGEEDEEEEVEKKET--FKELNEDGEVIEEEGIEELKE 379 (382)
T ss_pred HhcccccccchhhchhHHHHHhhhhhHHHHHHHhcCc--chhhcccccccchhHHHHhhh
Confidence 7652222346677778888888888777766555444 677888888888888776654
No 8
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=99.95 E-value=1.6e-26 Score=218.09 Aligned_cols=352 Identities=24% Similarity=0.339 Sum_probs=250.6
Q ss_pred HHHHHHHHHHHHhcCCCcEEEcCCCCCCHHHHHHHHHHhccCCCccEEEeccCCCC------HHHHHHHHHHhhhCCCcc
Q 007577 148 RESKQTLNEFAKELRAFSSVDMSGRNFGDEGLFFLAESLGYNQTAEEVSFAANGIT------AAGIKAFDGVLQSNIALK 221 (597)
Q Consensus 148 ~~~~~~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~l~~~l~~~~~L~~L~L~~~~l~------~~~~~~l~~~l~~~~~L~ 221 (597)
..+.+.+.+......++++|+|+||.++.+..+.++..+...++|+..++++--.+ ...+..|...+..++.|+
T Consensus 16 ~ed~~~v~~~~~~~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~ 95 (382)
T KOG1909|consen 16 EEDEKDVEEELEPMDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQ 95 (382)
T ss_pred HhhhhhHHHHhcccCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCcee
Confidence 34455566666677889999999999999999999999999999999999886311 123555666677777788
Q ss_pred EEEccCCCCChhHHHHHHHHHhcCCCcCEEEecCCCCChHHHHHHHHHHHcCCCccEEEeccCCCChhhHHHHHHHHhhC
Q 007577 222 TLNLSGNPIGDEGVKCLCDILVDNAGVERLQLSSVDLRDEGAKAIAELLKNNSILRVLELNNNMIDYSGFTSLAEALLEN 301 (597)
Q Consensus 222 ~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~ 301 (597)
+||||.|-++..+...+...+.+|..|++|.|.+|.+...+...++..+ .+|. .+ ..+...
T Consensus 96 ~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al------~~l~--~~-----------kk~~~~ 156 (382)
T KOG1909|consen 96 KLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRAL------FELA--VN-----------KKAASK 156 (382)
T ss_pred EeeccccccCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHH------HHHH--HH-----------hccCCC
Confidence 8888888888777777777777778888888888887777777666653 2222 11 111234
Q ss_pred CCccEEEcCCCCCChHHHHHHHHHhhcCCCCCEEEccCCCCChHHHHHHHHhhhcCccccceeeccCCCCChhHHHHHHH
Q 007577 302 STIRSLHLNGNYGGALGANALAKGLEGNKSLRELHLHGNSIGDEGIRALMSGLSSRKGKLAVLDIGNNSISAKGAFHVAE 381 (597)
Q Consensus 302 ~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~ 381 (597)
+.|+.+...+|.+.+.+...++..++.++.|+.+.+..|.|...++..+...+. .+++|+.|||.+|-++..+...++.
T Consensus 157 ~~Lrv~i~~rNrlen~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~-~~~~LevLdl~DNtft~egs~~Lak 235 (382)
T KOG1909|consen 157 PKLRVFICGRNRLENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALE-HCPHLEVLDLRDNTFTLEGSVALAK 235 (382)
T ss_pred cceEEEEeeccccccccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHH-hCCcceeeecccchhhhHHHHHHHH
Confidence 678888888888888888888888888888888888888888888866666665 5568888888888888888888888
Q ss_pred HHHcCCCCcEEEccCCCCCcHHHHHHHHHHhc-CCCccEEEccCCCCChHHHHHHHHHhhcCCCcCEEECcCCCC--CHH
Q 007577 382 YIKNCKSLLWINLYMNDIGDEGAEKIADALKQ-NRTITTIDLGGNNIHSKGASAIARVLKDNSVITSLDLAYNPI--GAD 458 (597)
Q Consensus 382 ~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~-~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i--~~~ 458 (597)
.++.+++|+.|++++|.+.+.|...+..++.. .+.|+.|.+.+|.|+.++...++..+...|.|+.|+|++|.+ .++
T Consensus 236 aL~s~~~L~El~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l~e~de 315 (382)
T KOG1909|consen 236 ALSSWPHLRELNLGDCLLENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRLGEKDE 315 (382)
T ss_pred HhcccchheeecccccccccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCcccccccch
Confidence 88888888888888888888888888888775 678888888888888888888877777778888888888887 555
Q ss_pred HHHHHHHHHhh-CCCcCEEecCCCCCChhHHHHHHHHHhcCCCccEEEccCCCCChHHHHHH
Q 007577 459 GAKALSEVLKF-HGNINTLKLGWCQIGASGAEFVADMLRYNNTISILDLRANGLRDEGAKCL 519 (597)
Q Consensus 459 ~~~~l~~~l~~-~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~n~i~~~~~~~l 519 (597)
++..+...+.. ...+...+.+.+.+.+.+.............-+.+++.++.+.+.+...+
T Consensus 316 ~i~ei~~~~~~~~~~~~~~~~s~e~l~~eg~e~e~~~~~~~~t~~e~~ed~e~ie~e~~ee~ 377 (382)
T KOG1909|consen 316 GIDEIASKFDTAHVLLEDIDDSEEELEREGEEDEEEEVEKKETFKELNEDGEVIEEEGIEEL 377 (382)
T ss_pred hHHHHHHhcccccccchhhchhHHHHHhhhhhHHHHHHHhcCcchhhcccccccchhHHHHh
Confidence 55555544311 11233333344444444444444444444444555555555555444443
No 9
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.93 E-value=1.3e-28 Score=235.31 Aligned_cols=377 Identities=21% Similarity=0.244 Sum_probs=225.1
Q ss_pred HHHHHHHHHHHHhcCCCcEEEcCCCCCCHHHHHHHHHHhccCCCccEEEeccCCCCHHHHHHHHHHhhhCCCccEEEccC
Q 007577 148 RESKQTLNEFAKELRAFSSVDMSGRNFGDEGLFFLAESLGYNQTAEEVSFAANGITAAGIKAFDGVLQSNIALKTLNLSG 227 (597)
Q Consensus 148 ~~~~~~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~l~~~l~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~ 227 (597)
..+.+.+.+-++++..+++|++.+|++.. ++.+++....++.++.++|++. .++..+....+|++++.++
T Consensus 54 ~N~l~~l~~dl~nL~~l~vl~~~~n~l~~-----lp~aig~l~~l~~l~vs~n~ls-----~lp~~i~s~~~l~~l~~s~ 123 (565)
T KOG0472|consen 54 HNDLEVLREDLKNLACLTVLNVHDNKLSQ-----LPAAIGELEALKSLNVSHNKLS-----ELPEQIGSLISLVKLDCSS 123 (565)
T ss_pred cCchhhccHhhhcccceeEEEeccchhhh-----CCHHHHHHHHHHHhhcccchHh-----hccHHHhhhhhhhhhhccc
Confidence 33444455566778889999999887654 4556666677888888888754 3555555666777777777
Q ss_pred CCCChhHHHHHHHHHhcCCCcCEEEecCCCCCh-----------------------HHHHHHHHHHHcCCCccEEEeccC
Q 007577 228 NPIGDEGVKCLCDILVDNAGVERLQLSSVDLRD-----------------------EGAKAIAELLKNNSILRVLELNNN 284 (597)
Q Consensus 228 n~l~~~~~~~l~~~l~~~~~L~~L~Ls~~~l~~-----------------------~~~~~l~~~l~~~~~L~~L~Ls~n 284 (597)
|.+.. +...++.+..++.|+..+|+++. .....+. ++.|++||...|
T Consensus 124 n~~~e-----l~~~i~~~~~l~dl~~~~N~i~slp~~~~~~~~l~~l~~~~n~l~~l~~~~i~-----m~~L~~ld~~~N 193 (565)
T KOG0472|consen 124 NELKE-----LPDSIGRLLDLEDLDATNNQISSLPEDMVNLSKLSKLDLEGNKLKALPENHIA-----MKRLKHLDCNSN 193 (565)
T ss_pred cceee-----cCchHHHHhhhhhhhccccccccCchHHHHHHHHHHhhccccchhhCCHHHHH-----HHHHHhcccchh
Confidence 76543 22333334455555555555443 2111111 245666666665
Q ss_pred CCChhhHHHHHHHHhhCCCccEEEcCCCCCChHHHHHHHHHhhcCCCCCEEEccCCCCChHHHHHHHHhhhcCcccccee
Q 007577 285 MIDYSGFTSLAEALLENSTIRSLHLNGNYGGALGANALAKGLEGNKSLRELHLHGNSIGDEGIRALMSGLSSRKGKLAVL 364 (597)
Q Consensus 285 ~i~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L 364 (597)
.+ ..++..++.+.+|+.|++.+|++...+ .|.+|..|++|+++.|.|.- +.+.....++.+..|
T Consensus 194 ~L-----~tlP~~lg~l~~L~~LyL~~Nki~~lP------ef~gcs~L~Elh~g~N~i~~-----lpae~~~~L~~l~vL 257 (565)
T KOG0472|consen 194 LL-----ETLPPELGGLESLELLYLRRNKIRFLP------EFPGCSLLKELHVGENQIEM-----LPAEHLKHLNSLLVL 257 (565)
T ss_pred hh-----hcCChhhcchhhhHHHHhhhcccccCC------CCCccHHHHHHHhcccHHHh-----hHHHHhcccccceee
Confidence 54 455666666666777777777655432 24556666666666665433 333333455567777
Q ss_pred eccCCCCChhHHHHHHHHHHcCCCCcEEEccCCCCCcHHHHHHHHHHhcCCCccEEEccCCCC-----------------
Q 007577 365 DIGNNSISAKGAFHVAEYIKNCKSLLWINLYMNDIGDEGAEKIADALKQNRTITTIDLGGNNI----------------- 427 (597)
Q Consensus 365 ~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l----------------- 427 (597)
||.+|++.. +|+.+..+++|.+||+++|.|+. ++-.++++ +|+.|.+.||.+
T Consensus 258 DLRdNklke-----~Pde~clLrsL~rLDlSNN~is~-----Lp~sLgnl-hL~~L~leGNPlrTiRr~ii~~gT~~vLK 326 (565)
T KOG0472|consen 258 DLRDNKLKE-----VPDEICLLRSLERLDLSNNDISS-----LPYSLGNL-HLKFLALEGNPLRTIRREIISKGTQEVLK 326 (565)
T ss_pred ecccccccc-----CchHHHHhhhhhhhcccCCcccc-----CCcccccc-eeeehhhcCCchHHHHHHHHcccHHHHHH
Confidence 777777666 55666666667777777766654 33444444 555555555544
Q ss_pred ------------------------------------------------ChHHHH--------------------------
Q 007577 428 ------------------------------------------------HSKGAS-------------------------- 433 (597)
Q Consensus 428 ------------------------------------------------~~~~~~-------------------------- 433 (597)
+....+
T Consensus 327 yLrs~~~~dglS~se~~~e~~~t~~~~~~~~~~~~i~tkiL~~s~~qlt~VPdEVfea~~~~~Vt~VnfskNqL~elPk~ 406 (565)
T KOG0472|consen 327 YLRSKIKDDGLSQSEGGTETAMTLPSESFPDIYAIITTKILDVSDKQLTLVPDEVFEAAKSEIVTSVNFSKNQLCELPKR 406 (565)
T ss_pred HHHHhhccCCCCCCcccccccCCCCCCcccchhhhhhhhhhcccccccccCCHHHHHHhhhcceEEEecccchHhhhhhh
Confidence 111111
Q ss_pred -------------------HHHHHhhcCCCcCEEECcCCCCCHHHHHHHHHHHhhCCCcCEEecCCCCCChhHHHHHHHH
Q 007577 434 -------------------AIARVLKDNSVITSLDLAYNPIGADGAKALSEVLKFHGNINTLKLGWCQIGASGAEFVADM 494 (597)
Q Consensus 434 -------------------~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~ 494 (597)
.++..+++.++|..|+|++|.+.+. +..+.....|+.|+++.|.+ ..+..+
T Consensus 407 L~~lkelvT~l~lsnn~isfv~~~l~~l~kLt~L~L~NN~Ln~L-----P~e~~~lv~Lq~LnlS~NrF-----r~lP~~ 476 (565)
T KOG0472|consen 407 LVELKELVTDLVLSNNKISFVPLELSQLQKLTFLDLSNNLLNDL-----PEEMGSLVRLQTLNLSFNRF-----RMLPEC 476 (565)
T ss_pred hHHHHHHHHHHHhhcCccccchHHHHhhhcceeeecccchhhhc-----chhhhhhhhhheeccccccc-----ccchHH
Confidence 1122233445555555555544332 11112223455555555544 223333
Q ss_pred HhcCCCccEEEccCCCCChHHHHHHHHHHhhcCccccEEEccCCCCChHHHHHHHHHHHhCCCCceeEEEcccCccchhh
Q 007577 495 LRYNNTISILDLRANGLRDEGAKCLAQSFKVVNEALTSIDLAFNEIRDDGAFAIAQALKANEDVAVTSLNLANNFLTKFG 574 (597)
Q Consensus 495 l~~~~~L~~L~l~~n~i~~~~~~~l~~~l~~~n~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~N~i~~~~ 574 (597)
++....++.+-.++|+|+...+..+..+ .+|.+||+.+|++. ..+..++++ ++|++|+++||+|....
T Consensus 477 ~y~lq~lEtllas~nqi~~vd~~~l~nm-----~nL~tLDL~nNdlq-~IPp~Lgnm------tnL~hLeL~gNpfr~Pr 544 (565)
T KOG0472|consen 477 LYELQTLETLLASNNQIGSVDPSGLKNM-----RNLTTLDLQNNDLQ-QIPPILGNM------TNLRHLELDGNPFRQPR 544 (565)
T ss_pred HhhHHHHHHHHhccccccccChHHhhhh-----hhcceeccCCCchh-hCChhhccc------cceeEEEecCCccCCCH
Confidence 3334455555556666666666666665 77999999999987 456667766 45999999999999999
Q ss_pred HHHHHHHHHHHhhhhhcce
Q 007577 575 QSALTDAKDLVYEMSEKEV 593 (597)
Q Consensus 575 ~~~l~~~~~~~~~l~~~~l 593 (597)
.+.+..++..+..+-...+
T Consensus 545 ~~iLmkgT~aiL~ylrdrI 563 (565)
T KOG0472|consen 545 HQILMKGTAAILSYLRDRI 563 (565)
T ss_pred HHHhccChHHHHHHhcccC
Confidence 9999999988888766554
No 10
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.91 E-value=1.3e-26 Score=232.56 Aligned_cols=334 Identities=19% Similarity=0.187 Sum_probs=252.7
Q ss_pred hHHHHHHHHHHHHhcCCCcEEEcCCCCCCHHHHHHHHHHhccCCCccEEEeccCCCCHHHHHHHHHHhhhCCCccEEEcc
Q 007577 147 FRESKQTLNEFAKELRAFSSVDMSGRNFGDEGLFFLAESLGYNQTAEEVSFAANGITAAGIKAFDGVLQSNIALKTLNLS 226 (597)
Q Consensus 147 ~~~~~~~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~l~~~l~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls 226 (597)
.+.....+.+-+..+..|++|.+++|++.. +...+..++.|+.+.+.+|++...| ++.-+..+..|..||||
T Consensus 40 nrt~L~~vPeEL~~lqkLEHLs~~HN~L~~-----vhGELs~Lp~LRsv~~R~N~LKnsG---iP~diF~l~dLt~lDLS 111 (1255)
T KOG0444|consen 40 NRTKLEQVPEELSRLQKLEHLSMAHNQLIS-----VHGELSDLPRLRSVIVRDNNLKNSG---IPTDIFRLKDLTILDLS 111 (1255)
T ss_pred chhhhhhChHHHHHHhhhhhhhhhhhhhHh-----hhhhhccchhhHHHhhhccccccCC---CCchhcccccceeeecc
Confidence 344455566667788889999999887654 3445567788999999998876554 23334566789999999
Q ss_pred CCCCChhHHHHHHHHHhcCCCcCEEEecCCCCChHHHHHHHHHHHcCCCccEEEeccCCCChhhHHHHHHHHhhCCCccE
Q 007577 227 GNPIGDEGVKCLCDILVDNAGVERLQLSSVDLRDEGAKAIAELLKNNSILRVLELNNNMIDYSGFTSLAEALLENSTIRS 306 (597)
Q Consensus 227 ~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~ 306 (597)
+|++.+ .+..+.+-+++-.|+|++|+|..+.-..+.. +..|-.|||++|++ +.++..+..+..|++
T Consensus 112 hNqL~E-----vP~~LE~AKn~iVLNLS~N~IetIPn~lfin----LtDLLfLDLS~NrL-----e~LPPQ~RRL~~Lqt 177 (1255)
T KOG0444|consen 112 HNQLRE-----VPTNLEYAKNSIVLNLSYNNIETIPNSLFIN----LTDLLFLDLSNNRL-----EMLPPQIRRLSMLQT 177 (1255)
T ss_pred hhhhhh-----cchhhhhhcCcEEEEcccCccccCCchHHHh----hHhHhhhccccchh-----hhcCHHHHHHhhhhh
Confidence 999876 5667777799999999999988764444444 37788999999998 777888888899999
Q ss_pred EEcCCCCCChHHHHHHHHHhhcCCCCCEEEccCCCCChHHHHHHHHhhhcCccccceeeccCCCCChhHHHHHHHHHHcC
Q 007577 307 LHLNGNYGGALGANALAKGLEGNKSLRELHLHGNSIGDEGIRALMSGLSSRKGKLAVLDIGNNSISAKGAFHVAEYIKNC 386 (597)
Q Consensus 307 L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~ 386 (597)
|.|++|.+...... -+..+.+|+.|++++.+-+-..++.-...+ .+|..+|++.|++.. +|+.+-++
T Consensus 178 L~Ls~NPL~hfQLr----QLPsmtsL~vLhms~TqRTl~N~Ptsld~l----~NL~dvDlS~N~Lp~-----vPecly~l 244 (1255)
T KOG0444|consen 178 LKLSNNPLNHFQLR----QLPSMTSLSVLHMSNTQRTLDNIPTSLDDL----HNLRDVDLSENNLPI-----VPECLYKL 244 (1255)
T ss_pred hhcCCChhhHHHHh----cCccchhhhhhhcccccchhhcCCCchhhh----hhhhhccccccCCCc-----chHHHhhh
Confidence 99999987665553 345677888999998865544333333333 389999999999988 88999999
Q ss_pred CCCcEEEccCCCCCcHHHHHHHHHHhcCCCccEEEccCCCCChHHHHHHHHHhhcCCCcCEEECcCCCCCHHHHHHHHHH
Q 007577 387 KSLLWINLYMNDIGDEGAEKIADALKQNRTITTIDLGGNNIHSKGASAIARVLKDNSVITSLDLAYNPIGADGAKALSEV 466 (597)
Q Consensus 387 ~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~ 466 (597)
++|+.|+|++|.|+.- ......-.+|++|+|+.|+++. ++..+.++++|+.|.+.+|+++-+| ++..
T Consensus 245 ~~LrrLNLS~N~iteL-----~~~~~~W~~lEtLNlSrNQLt~-----LP~avcKL~kL~kLy~n~NkL~FeG---iPSG 311 (1255)
T KOG0444|consen 245 RNLRRLNLSGNKITEL-----NMTEGEWENLETLNLSRNQLTV-----LPDAVCKLTKLTKLYANNNKLTFEG---IPSG 311 (1255)
T ss_pred hhhheeccCcCceeee-----eccHHHHhhhhhhccccchhcc-----chHHHhhhHHHHHHHhccCcccccC---Cccc
Confidence 9999999999999873 2223334689999999999886 6677777799999999999887665 4566
Q ss_pred HhhCCCcCEEecCCCCCChhHHHHHHHHHhcCCCccEEEccCCCCChHHHHHHHHHHhhcCccccEEEccCCC
Q 007577 467 LKFHGNINTLKLGWCQIGASGAEFVADMLRYNNTISILDLRANGLRDEGAKCLAQSFKVVNEALTSIDLAFNE 539 (597)
Q Consensus 467 l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~n~i~~~~~~~l~~~l~~~n~~L~~L~Ls~n~ 539 (597)
++.+.+|+++...+|.+ +.....+..|..|+.|.++.|++-.. .+.+.. -+.|+.||+..|.
T Consensus 312 IGKL~~Levf~aanN~L-----ElVPEglcRC~kL~kL~L~~NrLiTL-----PeaIHl-L~~l~vLDlreNp 373 (1255)
T KOG0444|consen 312 IGKLIQLEVFHAANNKL-----ELVPEGLCRCVKLQKLKLDHNRLITL-----PEAIHL-LPDLKVLDLRENP 373 (1255)
T ss_pred hhhhhhhHHHHhhcccc-----ccCchhhhhhHHHHHhcccccceeec-----hhhhhh-cCCcceeeccCCc
Confidence 66678999999999987 34566777889999999999976542 222221 1679999999984
No 11
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.88 E-value=4.7e-25 Score=221.41 Aligned_cols=348 Identities=18% Similarity=0.226 Sum_probs=265.5
Q ss_pred HHHHhcCCCcEEEcCCCCCCHHHHHHHHHHhccCCCccEEEeccCCCCHHHHHHHHHHhhhCCCccEEEccCCCCChhHH
Q 007577 156 EFAKELRAFSSVDMSGRNFGDEGLFFLAESLGYNQTAEEVSFAANGITAAGIKAFDGVLQSNIALKTLNLSGNPIGDEGV 235 (597)
Q Consensus 156 ~~~~~~~~L~~L~Ls~~~l~~~~~~~l~~~l~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~ 235 (597)
.-+++.+.++.|.|....+ ..+++.++++.+|+.|.+++|++. .+...+..++.|+.+++..|++.+.|
T Consensus 26 ~~v~qMt~~~WLkLnrt~L-----~~vPeEL~~lqkLEHLs~~HN~L~-----~vhGELs~Lp~LRsv~~R~N~LKnsG- 94 (1255)
T KOG0444|consen 26 HDVEQMTQMTWLKLNRTKL-----EQVPEELSRLQKLEHLSMAHNQLI-----SVHGELSDLPRLRSVIVRDNNLKNSG- 94 (1255)
T ss_pred hhHHHhhheeEEEechhhh-----hhChHHHHHHhhhhhhhhhhhhhH-----hhhhhhccchhhHHHhhhccccccCC-
Confidence 3345677788888876544 447888888999999999999864 34556677889999999999998776
Q ss_pred HHHHHHHhcCCCcCEEEecCCCCChHHHHHHHHHHHcCCCccEEEeccCCCChhhHHHHHHHH-hhCCCccEEEcCCCCC
Q 007577 236 KCLCDILVDNAGVERLQLSSVDLRDEGAKAIAELLKNNSILRVLELNNNMIDYSGFTSLAEAL-LENSTIRSLHLNGNYG 314 (597)
Q Consensus 236 ~~l~~~l~~~~~L~~L~Ls~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l-~~~~~L~~L~L~~n~i 314 (597)
++.-+.++..|..|+|++|++.. .+..+..-+++..|+|++|+| +.|+..+ .+++.|-.|+|++|.+
T Consensus 95 --iP~diF~l~dLt~lDLShNqL~E-----vP~~LE~AKn~iVLNLS~N~I-----etIPn~lfinLtDLLfLDLS~NrL 162 (1255)
T KOG0444|consen 95 --IPTDIFRLKDLTILDLSHNQLRE-----VPTNLEYAKNSIVLNLSYNNI-----ETIPNSLFINLTDLLFLDLSNNRL 162 (1255)
T ss_pred --CCchhcccccceeeecchhhhhh-----cchhhhhhcCcEEEEcccCcc-----ccCCchHHHhhHhHhhhccccchh
Confidence 55556677999999999999876 445555668999999999998 4455443 3577888999999987
Q ss_pred ChHHHHHHHHHhhcCCCCCEEEccCCCCChHHHHHHHHhhhcCccccceeeccCCCCChhHHHHHHHHHHcCCCCcEEEc
Q 007577 315 GALGANALAKGLEGNKSLRELHLHGNSIGDEGIRALMSGLSSRKGKLAVLDIGNNSISAKGAFHVAEYIKNCKSLLWINL 394 (597)
Q Consensus 315 ~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L 394 (597)
...+ .-+..+..|+.|+|++|.+....++.+ ..+..|+.|.+++.+-+-. .+|..+..+.+|..+|+
T Consensus 163 e~LP-----PQ~RRL~~LqtL~Ls~NPL~hfQLrQL-----PsmtsL~vLhms~TqRTl~---N~Ptsld~l~NL~dvDl 229 (1255)
T KOG0444|consen 163 EMLP-----PQIRRLSMLQTLKLSNNPLNHFQLRQL-----PSMTSLSVLHMSNTQRTLD---NIPTSLDDLHNLRDVDL 229 (1255)
T ss_pred hhcC-----HHHHHHhhhhhhhcCCChhhHHHHhcC-----ccchhhhhhhcccccchhh---cCCCchhhhhhhhhccc
Confidence 6544 446678899999999998877656555 3445788899988654433 46777888899999999
Q ss_pred cCCCCCcHHHHHHHHHHhcCCCccEEEccCCCCChHHHHHHHHHhhcCCCcCEEECcCCCCCHHHHHHHHHHHhhCCCcC
Q 007577 395 YMNDIGDEGAEKIADALKQNRTITTIDLGGNNIHSKGASAIARVLKDNSVITSLDLAYNPIGADGAKALSEVLKFHGNIN 474 (597)
Q Consensus 395 s~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~ 474 (597)
+.|.+.. +++++.++++|+.|+|++|.|+.... ....+ .+|++|++|.|+++. ++..+..+++|+
T Consensus 230 S~N~Lp~-----vPecly~l~~LrrLNLS~N~iteL~~-~~~~W----~~lEtLNlSrNQLt~-----LP~avcKL~kL~ 294 (1255)
T KOG0444|consen 230 SENNLPI-----VPECLYKLRNLRRLNLSGNKITELNM-TEGEW----ENLETLNLSRNQLTV-----LPDAVCKLTKLT 294 (1255)
T ss_pred cccCCCc-----chHHHhhhhhhheeccCcCceeeeec-cHHHH----hhhhhhccccchhcc-----chHHHhhhHHHH
Confidence 9998876 78888899999999999999987432 22333 789999999998864 566667779999
Q ss_pred EEecCCCCCChhHHHHHHHHHhcCCCccEEEccCCCCChHHHHHHHHHHhhcCccccEEEccCCCCChHHHHHHHHHHHh
Q 007577 475 TLKLGWCQIGASGAEFVADMLRYNNTISILDLRANGLRDEGAKCLAQSFKVVNEALTSIDLAFNEIRDDGAFAIAQALKA 554 (597)
Q Consensus 475 ~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~n~i~~~~~~~l~~~l~~~n~~L~~L~Ls~n~i~~~~~~~l~~~l~~ 554 (597)
.|.+.+|+++-.| +..++.+..+|+.+..++|.+.- .+..++.+ ..|+.|.|+.|++- ..+.+|--.
T Consensus 295 kLy~n~NkL~FeG---iPSGIGKL~~Levf~aanN~LEl-VPEglcRC-----~kL~kL~L~~NrLi-TLPeaIHlL--- 361 (1255)
T KOG0444|consen 295 KLYANNNKLTFEG---IPSGIGKLIQLEVFHAANNKLEL-VPEGLCRC-----VKLQKLKLDHNRLI-TLPEAIHLL--- 361 (1255)
T ss_pred HHHhccCcccccC---CccchhhhhhhHHHHhhcccccc-Cchhhhhh-----HHHHHhccccccee-echhhhhhc---
Confidence 9999999987654 34556666889999999997654 35567776 56999999999754 123344222
Q ss_pred CCCCceeEEEcccCcc
Q 007577 555 NEDVAVTSLNLANNFL 570 (597)
Q Consensus 555 ~~~~~L~~L~L~~N~i 570 (597)
..|..||+..|.-
T Consensus 362 ---~~l~vLDlreNpn 374 (1255)
T KOG0444|consen 362 ---PDLKVLDLRENPN 374 (1255)
T ss_pred ---CCcceeeccCCcC
Confidence 2389999998753
No 12
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=99.86 E-value=9.5e-22 Score=203.95 Aligned_cols=415 Identities=29% Similarity=0.394 Sum_probs=344.3
Q ss_pred HHHHHhcCCCcEEEcCCCCCCHHH---HHHHHHHhcc--CCC--ccEEEeccCCCCHHHHHHHHHHhhhCCCccEEEccC
Q 007577 155 NEFAKELRAFSSVDMSGRNFGDEG---LFFLAESLGY--NQT--AEEVSFAANGITAAGIKAFDGVLQSNIALKTLNLSG 227 (597)
Q Consensus 155 ~~~~~~~~~L~~L~Ls~~~l~~~~---~~~l~~~l~~--~~~--L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~ 227 (597)
.......+.+..+.++.+...+.+ .......+.. .+. +..|+|.+|.+.+.+...+...+..+++|..|++++
T Consensus 45 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~L~~~~l~~~~~~~l~~~l~t~~~L~~L~l~~ 124 (478)
T KOG4308|consen 45 RSLLRRNTTLTELVLQSCSLSGRGRCFVLELLELLREPLNKLASLLHLSLANNRLGDRGAEELAQALKTLPTLGQLDLSG 124 (478)
T ss_pred HHhhhhccchhhhhhhhhhccccccchHHHHHHhhccccchhhhHHHhhhhhCccccchHHHHHHHhcccccHhHhhccc
Confidence 344444566677777777666555 2222233332 222 889999999999999999999999999999999999
Q ss_pred CCCChhHHHHHHHHHhcC-CCcCEEEecCCCCChHHHHHHHHHHHcCCCccEEEeccCCCChhhHHHHHHHHhh----CC
Q 007577 228 NPIGDEGVKCLCDILVDN-AGVERLQLSSVDLRDEGAKAIAELLKNNSILRVLELNNNMIDYSGFTSLAEALLE----NS 302 (597)
Q Consensus 228 n~l~~~~~~~l~~~l~~~-~~L~~L~Ls~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~----~~ 302 (597)
|.+++.+...+++.+... +.++.|++..|.++..+...++..+..+..++.++++.|.+...+...+..++.. ..
T Consensus 125 n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~~L~~~~~l~~l~l~~n~l~~~g~~~l~~~l~~~~~~~~ 204 (478)
T KOG4308|consen 125 NNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAAVLEKNEHLTELDLSLNGLIELGLLVLSQALESAASPLS 204 (478)
T ss_pred CCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHHHHhcccchhHHHHHhcccchhhhHHHhhhhhhhhcccc
Confidence 999999999999998885 7899999999999999999999999999999999999999988888888888875 67
Q ss_pred CccEEEcCCCCCChHHHHHHHHHhhcCCC-CCEEEccCCCCChHHHHHHHHhhhcCccccceeeccCCCCChhHHHHHHH
Q 007577 303 TIRSLHLNGNYGGALGANALAKGLEGNKS-LRELHLHGNSIGDEGIRALMSGLSSRKGKLAVLDIGNNSISAKGAFHVAE 381 (597)
Q Consensus 303 ~L~~L~L~~n~i~~~~~~~l~~~l~~~~~-L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~ 381 (597)
++++|.+.+|.++......+...+...+. +.+|++..|.+.+.++..+...+....+.++.++++.|.|++.+...+.+
T Consensus 205 ~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~~n~l~d~g~~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~L~~ 284 (478)
T KOG4308|consen 205 SLETLKLSRCGVTSSSCALLDEVLASGESLLRELDLASNKLGDVGVEKLLPCLSVLSETLRVLDLSRNSITEKGVRDLAE 284 (478)
T ss_pred cHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHHHhcCcchHHHHHHHHHhcccchhhhhhhhhcCCccccchHHHHH
Confidence 89999999999999888888888888887 88899999999999999998888766578999999999999999999999
Q ss_pred HHHcCCCCcEEEccCCCCCcHHHHHHHHHHhcCCCccEEEccCCCC-ChHHHHHHHHHhhcCCCcCEEECcCCCCCHHHH
Q 007577 382 YIKNCKSLLWINLYMNDIGDEGAEKIADALKQNRTITTIDLGGNNI-HSKGASAIARVLKDNSVITSLDLAYNPIGADGA 460 (597)
Q Consensus 382 ~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l-~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~ 460 (597)
.+..++.++.|.++.|.+.+.+...+.+.+.....+.++-+.++.. +..+...++........+.....+++...+++.
T Consensus 285 ~l~~~~~l~~l~l~~n~l~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 364 (478)
T KOG4308|consen 285 VLVSCRQLEELSLSNNPLTDYGVELLLEALERKTPLLHLVLGGTGKGTRGGTSVLAEADAQRQLLSELGISGNRVGEEGL 364 (478)
T ss_pred HHhhhHHHHHhhcccCccccHHHHHHHHHhhhcccchhhhccccCccchhHHHHHHHHHHHhhhhHHHHhhhccchHHHH
Confidence 9999999999999999999999999999988888888888886644 443444444444444556667778888888777
Q ss_pred HHHHHHHhhCCC-cCEEecCCCCCChhHHHHHHHHHhcCCCccEEEccCCCCChHHHHHHHHHHhhcCccccEEEccCCC
Q 007577 461 KALSEVLKFHGN-INTLKLGWCQIGASGAEFVADMLRYNNTISILDLRANGLRDEGAKCLAQSFKVVNEALTSIDLAFNE 539 (597)
Q Consensus 461 ~~l~~~l~~~~~-L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~n~i~~~~~~~l~~~l~~~n~~L~~L~Ls~n~ 539 (597)
..+......... +..+++..+.+.+.+...++..+..+..+++++++.|...+++...+....+... .++.++++.|.
T Consensus 365 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~l~~~~l~~n~~~~~~~~~l~~~~~~~~-~~~~~~l~~~~ 443 (478)
T KOG4308|consen 365 ALLVLAKSNPKSELLRLSLNSQVIEGRGALRLAAQLASNEKLEILDLSLNSLHDEGAEVLTEQLSRNG-SLKALRLSRNP 443 (478)
T ss_pred HHHhhhhcccCcccchhhhhccccccHHHHHhhhhhhhcchhhhhhhhcCccchhhHHHHHHhhhhcc-cchhhhhccCh
Confidence 776666544333 7778888888888888888888888999999999999999998888888776655 89999999999
Q ss_pred CChHHHHHHHHHHHhCCCCceeEEEcccCccch
Q 007577 540 IRDDGAFAIAQALKANEDVAVTSLNLANNFLTK 572 (597)
Q Consensus 540 i~~~~~~~l~~~l~~~~~~~L~~L~L~~N~i~~ 572 (597)
++..+.....+....+.. +....+.+|.++-
T Consensus 444 ~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~ 474 (478)
T KOG4308|consen 444 ITALGTEELQRALALNPG--ILAIRLRGNVIGR 474 (478)
T ss_pred hhhcchHHHHHHHhcCCC--cceeecccCcccc
Confidence 999999999988887776 8888888887764
No 13
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.80 E-value=6.1e-21 Score=200.69 Aligned_cols=374 Identities=20% Similarity=0.203 Sum_probs=207.0
Q ss_pred cCCCcEEEcCCCCCCHHHHHHHHHHhccCCCccEEEeccCCCCHHHHHHHHHHhhhCCCccEEEccCCCCChhHHHHHHH
Q 007577 161 LRAFSSVDMSGRNFGDEGLFFLAESLGYNQTAEEVSFAANGITAAGIKAFDGVLQSNIALKTLNLSGNPIGDEGVKCLCD 240 (597)
Q Consensus 161 ~~~L~~L~Ls~~~l~~~~~~~l~~~l~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~ 240 (597)
.-+|+.|||++|++.+.+ ..+....+|+.|+++.|.|... +..+.++.+|++|+|.+|.+.. ++.
T Consensus 44 ~v~L~~l~lsnn~~~~fp-----~~it~l~~L~~ln~s~n~i~~v-----p~s~~~~~~l~~lnL~~n~l~~-----lP~ 108 (1081)
T KOG0618|consen 44 RVKLKSLDLSNNQISSFP-----IQITLLSHLRQLNLSRNYIRSV-----PSSCSNMRNLQYLNLKNNRLQS-----LPA 108 (1081)
T ss_pred eeeeEEeeccccccccCC-----chhhhHHHHhhcccchhhHhhC-----chhhhhhhcchhheeccchhhc-----Cch
Confidence 444888888888877643 2233345777777777765432 2334455677777777776543 444
Q ss_pred HHhcCCCcCEEEecCCCCChHHH--HHHHHH-------------HHcCCCccEEEeccCCCChhhHHHHHHHHhhCCCcc
Q 007577 241 ILVDNAGVERLQLSSVDLRDEGA--KAIAEL-------------LKNNSILRVLELNNNMIDYSGFTSLAEALLENSTIR 305 (597)
Q Consensus 241 ~l~~~~~L~~L~Ls~~~l~~~~~--~~l~~~-------------l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~ 305 (597)
.+..+.+|++|++++|+++.... ...... ++. ..++++++..|.+.+. +...+..+..
T Consensus 109 ~~~~lknl~~LdlS~N~f~~~Pl~i~~lt~~~~~~~s~N~~~~~lg~-~~ik~~~l~~n~l~~~----~~~~i~~l~~-- 181 (1081)
T KOG0618|consen 109 SISELKNLQYLDLSFNHFGPIPLVIEVLTAEEELAASNNEKIQRLGQ-TSIKKLDLRLNVLGGS----FLIDIYNLTH-- 181 (1081)
T ss_pred hHHhhhcccccccchhccCCCchhHHhhhHHHHHhhhcchhhhhhcc-ccchhhhhhhhhcccc----hhcchhhhhe--
Confidence 55556777777777776553110 000000 111 1134444444443321 1111111122
Q ss_pred EEEcCCCCCChHHHHHHHH-------------HhhcCCCCCEEEccCCCCChHHHHHHHHhhhcCccccceeeccCCCCC
Q 007577 306 SLHLNGNYGGALGANALAK-------------GLEGNKSLRELHLHGNSIGDEGIRALMSGLSSRKGKLAVLDIGNNSIS 372 (597)
Q Consensus 306 ~L~L~~n~i~~~~~~~l~~-------------~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~ 372 (597)
.|+|.+|.+.......+.. .--..++|+.|+.+.|.++..... ....+|+.+++++|.++
T Consensus 182 ~ldLr~N~~~~~dls~~~~l~~l~c~rn~ls~l~~~g~~l~~L~a~~n~l~~~~~~-------p~p~nl~~~dis~n~l~ 254 (1081)
T KOG0618|consen 182 QLDLRYNEMEVLDLSNLANLEVLHCERNQLSELEISGPSLTALYADHNPLTTLDVH-------PVPLNLQYLDISHNNLS 254 (1081)
T ss_pred eeecccchhhhhhhhhccchhhhhhhhcccceEEecCcchheeeeccCcceeeccc-------cccccceeeecchhhhh
Confidence 3566665554222111100 000124555666666655422111 11127888888888888
Q ss_pred hhHHHHHHHHHHcCCCCcEEEccCCCCCcHH------------------HHHHHHHHhcCCCccEEEccCCCCChHHHHH
Q 007577 373 AKGAFHVAEYIKNCKSLLWINLYMNDIGDEG------------------AEKIADALKQNRTITTIDLGGNNIHSKGASA 434 (597)
Q Consensus 373 ~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~------------------~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~ 434 (597)
. ++.++..|.+|+.|+..+|.+...- ++.++..+...+.|++|+|..|+|.......
T Consensus 255 ~-----lp~wi~~~~nle~l~~n~N~l~~lp~ri~~~~~L~~l~~~~nel~yip~~le~~~sL~tLdL~~N~L~~lp~~~ 329 (1081)
T KOG0618|consen 255 N-----LPEWIGACANLEALNANHNRLVALPLRISRITSLVSLSAAYNELEYIPPFLEGLKSLRTLDLQSNNLPSLPDNF 329 (1081)
T ss_pred c-----chHHHHhcccceEecccchhHHhhHHHHhhhhhHHHHHhhhhhhhhCCCcccccceeeeeeehhccccccchHH
Confidence 7 6788888888888888888764311 1122223334567888999888775432211
Q ss_pred HHHH------h---------------hcCCCcCEEECcCCCCCHHHHHHHHHHHhhCCCcCEEecCCCCCChhHHHHHHH
Q 007577 435 IARV------L---------------KDNSVITSLDLAYNPIGADGAKALSEVLKFHGNINTLKLGWCQIGASGAEFVAD 493 (597)
Q Consensus 435 l~~~------l---------------~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~ 493 (597)
+.-. + ...+.|+.|.+.+|.+++..+..+. ...+||.|+|++|++.......+.
T Consensus 330 l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~----~~~hLKVLhLsyNrL~~fpas~~~- 404 (1081)
T KOG0618|consen 330 LAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDSCFPVLV----NFKHLKVLHLSYNRLNSFPASKLR- 404 (1081)
T ss_pred HhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCcccccchhhhc----cccceeeeeecccccccCCHHHHh-
Confidence 1110 0 0123455666666777666544443 347888888888877655444443
Q ss_pred HHhcCCCccEEEccCCCCChHHHHHHHH--HH----hhc-----------CccccEEEccCCCCChHHHHHHHHHHHhCC
Q 007577 494 MLRYNNTISILDLRANGLRDEGAKCLAQ--SF----KVV-----------NEALTSIDLAFNEIRDDGAFAIAQALKANE 556 (597)
Q Consensus 494 ~l~~~~~L~~L~l~~n~i~~~~~~~l~~--~l----~~~-----------n~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~ 556 (597)
+...|++|+++||+++.... .++. .+ .+. .+.|+.+|++.|+++.........
T Consensus 405 ---kle~LeeL~LSGNkL~~Lp~-tva~~~~L~tL~ahsN~l~~fPe~~~l~qL~~lDlS~N~L~~~~l~~~~p------ 474 (1081)
T KOG0618|consen 405 ---KLEELEELNLSGNKLTTLPD-TVANLGRLHTLRAHSNQLLSFPELAQLPQLKVLDLSCNNLSEVTLPEALP------ 474 (1081)
T ss_pred ---chHHhHHHhcccchhhhhhH-HHHhhhhhHHHhhcCCceeechhhhhcCcceEEecccchhhhhhhhhhCC------
Confidence 34778888888887765432 1111 00 001 177999999999998654443322
Q ss_pred CCceeEEEcccCccchhhHHHHHHHHH
Q 007577 557 DVAVTSLNLANNFLTKFGQSALTDAKD 583 (597)
Q Consensus 557 ~~~L~~L~L~~N~i~~~~~~~l~~~~~ 583 (597)
..+|++|||+||.-.....+.|.....
T Consensus 475 ~p~LkyLdlSGN~~l~~d~~~l~~l~~ 501 (1081)
T KOG0618|consen 475 SPNLKYLDLSGNTRLVFDHKTLKVLKS 501 (1081)
T ss_pred CcccceeeccCCcccccchhhhHHhhh
Confidence 246999999999877777776655533
No 14
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=99.80 E-value=8.1e-20 Score=189.61 Aligned_cols=405 Identities=25% Similarity=0.324 Sum_probs=255.9
Q ss_pred HHHHhccCCCccEEEeccCCCCHHHH---HHHHHHhhhC--CC--ccEEEccCCCCChhHHHHHHHHHhcCCCcCEEEec
Q 007577 182 LAESLGYNQTAEEVSFAANGITAAGI---KAFDGVLQSN--IA--LKTLNLSGNPIGDEGVKCLCDILVDNAGVERLQLS 254 (597)
Q Consensus 182 l~~~l~~~~~L~~L~L~~~~l~~~~~---~~l~~~l~~~--~~--L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~Ls 254 (597)
+...+...+.+..+.+.+|..+..+. ......+... +- +..|.|.+|.+.+.+...++..+..++.|+.|+++
T Consensus 44 l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~L~~~~l~~~~~~~l~~~l~t~~~L~~L~l~ 123 (478)
T KOG4308|consen 44 LRSLLRRNTTLTELVLQSCSLSGRGRCFVLELLELLREPLNKLASLLHLSLANNRLGDRGAEELAQALKTLPTLGQLDLS 123 (478)
T ss_pred HHHhhhhccchhhhhhhhhhccccccchHHHHHHhhccccchhhhHHHhhhhhCccccchHHHHHHHhcccccHhHhhcc
Confidence 44444456778888888887666552 1111121111 11 66677777777777777777777767777777777
Q ss_pred CCCCChHHHHHHHHHHHcC-CCccEEEeccCCCChhhHHHHHHHHhhCCCccEEEcCCCCCChHHHHHHHHHhhc----C
Q 007577 255 SVDLRDEGAKAIAELLKNN-SILRVLELNNNMIDYSGFTSLAEALLENSTIRSLHLNGNYGGALGANALAKGLEG----N 329 (597)
Q Consensus 255 ~~~l~~~~~~~l~~~l~~~-~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~----~ 329 (597)
+|.+++.+...+...+... ..+++|++..|.+++.+...+...+..+..++.++++.|.+...+...+...+.. .
T Consensus 124 ~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~~L~~~~~l~~l~l~~n~l~~~g~~~l~~~l~~~~~~~ 203 (478)
T KOG4308|consen 124 GNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAAVLEKNEHLTELDLSLNGLIELGLLVLSQALESAASPL 203 (478)
T ss_pred cCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHHHHhcccchhHHHHHhcccchhhhHHHhhhhhhhhccc
Confidence 7777777777776666654 5566677777777777767777666666667777777766665555555555553 4
Q ss_pred CCCCEEEccCCCCChHHHHHHHHhhhcCccccceeeccCCCCChhHHHHHHHHHHcC-CCCcEEEccCCCCCcHHHHHHH
Q 007577 330 KSLRELHLHGNSIGDEGIRALMSGLSSRKGKLAVLDIGNNSISAKGAFHVAEYIKNC-KSLLWINLYMNDIGDEGAEKIA 408 (597)
Q Consensus 330 ~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~-~~L~~L~Ls~n~l~~~~~~~l~ 408 (597)
.++++|++++|.++..+...+...+......+..|++.+|.+.+.+...+...+... ..++++++..|.|++.+...+.
T Consensus 204 ~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~~n~l~d~g~~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~L~ 283 (478)
T KOG4308|consen 204 SSLETLKLSRCGVTSSSCALLDEVLASGESLLRELDLASNKLGDVGVEKLLPCLSVLSETLRVLDLSRNSITEKGVRDLA 283 (478)
T ss_pred ccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHHHhcCcchHHHHHHHHHhcccchhhhhhhhhcCCccccchHHHH
Confidence 456666666666666655555555544433355566666666666666666666555 5666666666666666666666
Q ss_pred HHHhcCCCccEEEccCCCCChHHHHHHHHHhhcCCCcCEEECcCCCCCHH-HHHHHHHHHhhCCCcCEEecCCCCCChhH
Q 007577 409 DALKQNRTITTIDLGGNNIHSKGASAIARVLKDNSVITSLDLAYNPIGAD-GAKALSEVLKFHGNINTLKLGWCQIGASG 487 (597)
Q Consensus 409 ~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~-~~~~l~~~l~~~~~L~~L~L~~n~i~~~~ 487 (597)
+.+..++.++++.++.|.+.+.+...+...+.....+..+-+.++..... +...+.........+.....+++...+.+
T Consensus 284 ~~l~~~~~l~~l~l~~n~l~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 363 (478)
T KOG4308|consen 284 EVLVSCRQLEELSLSNNPLTDYGVELLLEALERKTPLLHLVLGGTGKGTRGGTSVLAEADAQRQLLSELGISGNRVGEEG 363 (478)
T ss_pred HHHhhhHHHHHhhcccCccccHHHHHHHHHhhhcccchhhhccccCccchhHHHHHHHHHHHhhhhHHHHhhhccchHHH
Confidence 66666666666666666666666666666666555565665554433222 22222222222233333444444555555
Q ss_pred HHHHHHHHhcCCC-ccEEEccCCCCChHHHHHHHHHHhhcCccccEEEccCCCCChHHHHHHHHHHHhCCCCceeEEEcc
Q 007577 488 AEFVADMLRYNNT-ISILDLRANGLRDEGAKCLAQSFKVVNEALTSIDLAFNEIRDDGAFAIAQALKANEDVAVTSLNLA 566 (597)
Q Consensus 488 ~~~l~~~l~~~~~-L~~L~l~~n~i~~~~~~~l~~~l~~~n~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~ 566 (597)
...+......-+. +..+++..+.+.+.+...++.... .++.+..++++.|...+++...+....+.+- .++.+.++
T Consensus 364 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~-~~~~l~~~~l~~n~~~~~~~~~l~~~~~~~~--~~~~~~l~ 440 (478)
T KOG4308|consen 364 LALLVLAKSNPKSELLRLSLNSQVIEGRGALRLAAQLA-SNEKLEILDLSLNSLHDEGAEVLTEQLSRNG--SLKALRLS 440 (478)
T ss_pred HHHHhhhhcccCcccchhhhhccccccHHHHHhhhhhh-hcchhhhhhhhcCccchhhHHHHHHhhhhcc--cchhhhhc
Confidence 4444444333333 667777777777777777766654 3578999999999988888888888877766 59999999
Q ss_pred cCccchhhHHHHHHHHHHHhhhh
Q 007577 567 NNFLTKFGQSALTDAKDLVYEMS 589 (597)
Q Consensus 567 ~N~i~~~~~~~l~~~~~~~~~l~ 589 (597)
.|.++..+.+...+.......+.
T Consensus 441 ~~~~~~~~~~~~~~~~~~~~~~~ 463 (478)
T KOG4308|consen 441 RNPITALGTEELQRALALNPGIL 463 (478)
T ss_pred cChhhhcchHHHHHHHhcCCCcc
Confidence 99999999988888765554443
No 15
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.76 E-value=2.6e-20 Score=196.01 Aligned_cols=269 Identities=23% Similarity=0.228 Sum_probs=176.8
Q ss_pred CCccEEEccCCCCChhHHHHHHHHHhcCCCcCEEEecCCCCChHHHHHHHHHHHcCCCccEEEeccCCCChhhHHHHHHH
Q 007577 218 IALKTLNLSGNPIGDEGVKCLCDILVDNAGVERLQLSSVDLRDEGAKAIAELLKNNSILRVLELNNNMIDYSGFTSLAEA 297 (597)
Q Consensus 218 ~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~ 297 (597)
++|+.|+.++|.+....... ...+|+++++++|+++. +++++..+.+|+.++..+|++ ..++..
T Consensus 219 ~~l~~L~a~~n~l~~~~~~p------~p~nl~~~dis~n~l~~-----lp~wi~~~~nle~l~~n~N~l-----~~lp~r 282 (1081)
T KOG0618|consen 219 PSLTALYADHNPLTTLDVHP------VPLNLQYLDISHNNLSN-----LPEWIGACANLEALNANHNRL-----VALPLR 282 (1081)
T ss_pred cchheeeeccCcceeecccc------ccccceeeecchhhhhc-----chHHHHhcccceEecccchhH-----HhhHHH
Confidence 44555566666554221111 12567777777776665 456666667777777777776 444555
Q ss_pred HhhCCCccEEEcCCCCCChHHHHHHHHHhhcCCCCCEEEccCCCCChHHHHHHHHhhhcCccccceeeccCCCCChhHHH
Q 007577 298 LLENSTIRSLHLNGNYGGALGANALAKGLEGNKSLRELHLHGNSIGDEGIRALMSGLSSRKGKLAVLDIGNNSISAKGAF 377 (597)
Q Consensus 298 l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~ 377 (597)
+....+|+.|.+..|.+... +..+...+.|++|+|..|.+.+.... +.. .....|..|+.+.|.+...-
T Consensus 283 i~~~~~L~~l~~~~nel~yi-----p~~le~~~sL~tLdL~~N~L~~lp~~-~l~---v~~~~l~~ln~s~n~l~~lp-- 351 (1081)
T KOG0618|consen 283 ISRITSLVSLSAAYNELEYI-----PPFLEGLKSLRTLDLQSNNLPSLPDN-FLA---VLNASLNTLNVSSNKLSTLP-- 351 (1081)
T ss_pred HhhhhhHHHHHhhhhhhhhC-----CCcccccceeeeeeehhccccccchH-HHh---hhhHHHHHHhhhhccccccc--
Confidence 55566777777776655432 23345577888888888887653221 111 11113666666666655410
Q ss_pred HHHHHHHcCCCCcEEEccCCCCCcHHHHHHHHHHhcCCCccEEEccCCCCChHHHHHHHHHhhcCCCcCEEECcCCCCCH
Q 007577 378 HVAEYIKNCKSLLWINLYMNDIGDEGAEKIADALKQNRTITTIDLGGNNIHSKGASAIARVLKDNSVITSLDLAYNPIGA 457 (597)
Q Consensus 378 ~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~ 457 (597)
...=...+.|+.|.+.+|.++|. ....+...++||.|+|++|++..-....+.+ ++.|++|+||+|+++.
T Consensus 352 --~~~e~~~~~Lq~LylanN~Ltd~----c~p~l~~~~hLKVLhLsyNrL~~fpas~~~k----le~LeeL~LSGNkL~~ 421 (1081)
T KOG0618|consen 352 --SYEENNHAALQELYLANNHLTDS----CFPVLVNFKHLKVLHLSYNRLNSFPASKLRK----LEELEELNLSGNKLTT 421 (1081)
T ss_pred --cccchhhHHHHHHHHhcCccccc----chhhhccccceeeeeecccccccCCHHHHhc----hHHhHHHhcccchhhh
Confidence 00011234688899999999987 4455666789999999999888755444444 4889999999998865
Q ss_pred HHHHHHHHHHhhCCCcCEEecCCCCCChhHHHHHHHHHhcCCCccEEEccCCCCChHHHHHHHHHHhhcCccccEEEccC
Q 007577 458 DGAKALSEVLKFHGNINTLKLGWCQIGASGAEFVADMLRYNNTISILDLRANGLRDEGAKCLAQSFKVVNEALTSIDLAF 537 (597)
Q Consensus 458 ~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~n~i~~~~~~~l~~~l~~~n~~L~~L~Ls~ 537 (597)
++..+..+..|++|...+|++.... .++ ..++|+.+|++.|.++.......... ++|++||+++
T Consensus 422 -----Lp~tva~~~~L~tL~ahsN~l~~fP--e~~----~l~qL~~lDlS~N~L~~~~l~~~~p~-----p~LkyLdlSG 485 (1081)
T KOG0618|consen 422 -----LPDTVANLGRLHTLRAHSNQLLSFP--ELA----QLPQLKVLDLSCNNLSEVTLPEALPS-----PNLKYLDLSG 485 (1081)
T ss_pred -----hhHHHHhhhhhHHHhhcCCceeech--hhh----hcCcceEEecccchhhhhhhhhhCCC-----cccceeeccC
Confidence 5566677789999999999986543 333 34899999999999887654443322 7899999999
Q ss_pred CC
Q 007577 538 NE 539 (597)
Q Consensus 538 n~ 539 (597)
|.
T Consensus 486 N~ 487 (1081)
T KOG0618|consen 486 NT 487 (1081)
T ss_pred Cc
Confidence 95
No 16
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=99.75 E-value=1.9e-17 Score=151.42 Aligned_cols=260 Identities=19% Similarity=0.201 Sum_probs=153.7
Q ss_pred HHHHHHHHHHHhcCCCcEEEcCCCCCCHHHHHHHHHHhccCCCccEEEeccCCCCH------HHHHHHHHHhhhCCCccE
Q 007577 149 ESKQTLNEFAKELRAFSSVDMSGRNFGDEGLFFLAESLGYNQTAEEVSFAANGITA------AGIKAFDGVLQSNIALKT 222 (597)
Q Consensus 149 ~~~~~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~l~~~l~~~~~L~~L~L~~~~l~~------~~~~~l~~~l~~~~~L~~ 222 (597)
.+.+..-+-+.....+++++||||.|+.+.+..++..+..-++|+..++++-..+. ..+..+..++-.||.|+.
T Consensus 17 eDvk~v~eel~~~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~ 96 (388)
T COG5238 17 EDVKGVVEELEMMDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQK 96 (388)
T ss_pred chhhHHHHHHHhhcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCccee
Confidence 33444444444567788888888888888888888888877788888877653211 123333444445555555
Q ss_pred EEccCCCCChhHHHHHHHHHhcCCCcCEEEecCCCCChHHHHHHHHHHHcCCCccEEEeccCCCChhhHHHHHHHHhhCC
Q 007577 223 LNLSGNPIGDEGVKCLCDILVDNAGVERLQLSSVDLRDEGAKAIAELLKNNSILRVLELNNNMIDYSGFTSLAEALLENS 302 (597)
Q Consensus 223 L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~ 302 (597)
++||.|-++......+.+.+.+...|++|.+++|.+...+-..++..+.. | ..|+ -...-|
T Consensus 97 v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~------l--a~nK-----------Kaa~kp 157 (388)
T COG5238 97 VDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFH------L--AYNK-----------KAADKP 157 (388)
T ss_pred eeccccccCcccchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHH------H--HHHh-----------hhccCC
Confidence 55555555555555555555555555555555555554444444433211 0 0110 001235
Q ss_pred CccEEEcCCCCCChHHHHHHHHHhhcCCCCCEEEccCCCCChHHHHHHHHhhhcCccccceeeccCCCCChhHHHHHHHH
Q 007577 303 TIRSLHLNGNYGGALGANALAKGLEGNKSLRELHLHGNSIGDEGIRALMSGLSSRKGKLAVLDIGNNSISAKGAFHVAEY 382 (597)
Q Consensus 303 ~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~ 382 (597)
.|+......|++..-+...++..+..-..|+++.+..|.|...|+..+...-...+.+|+.||+.+|-++..+...++..
T Consensus 158 ~Le~vicgrNRlengs~~~~a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~a 237 (388)
T COG5238 158 KLEVVICGRNRLENGSKELSAALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADA 237 (388)
T ss_pred CceEEEeccchhccCcHHHHHHHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHH
Confidence 66677776666655555555555555567777777777777776665544322334467777777777777666667777
Q ss_pred HHcCCCCcEEEccCCCCCcHHHHHHHHHHhc--CCCccEEEccCCCC
Q 007577 383 IKNCKSLLWINLYMNDIGDEGAEKIADALKQ--NRTITTIDLGGNNI 427 (597)
Q Consensus 383 l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~--~~~L~~L~L~~n~l 427 (597)
++..+.|+.|.+..|-++..|...+...+.. .++|..|...+|.+
T Consensus 238 l~~W~~lrEL~lnDClls~~G~~~v~~~f~e~~~p~l~~L~~~Yne~ 284 (388)
T COG5238 238 LCEWNLLRELRLNDCLLSNEGVKSVLRRFNEKFVPNLMPLPGDYNER 284 (388)
T ss_pred hcccchhhhccccchhhccccHHHHHHHhhhhcCCCccccccchhhh
Confidence 7777777777777777777666666666543 45666666666543
No 17
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.75 E-value=9.8e-21 Score=181.61 Aligned_cols=307 Identities=21% Similarity=0.222 Sum_probs=182.0
Q ss_pred HHHHhccCCCccEEEeccCCCCHHHHHHHHHHhhhCCCccEEEccCCCCChhHHHHHHHHHhcCCCcCEEEecCCCCChH
Q 007577 182 LAESLGYNQTAEEVSFAANGITAAGIKAFDGVLQSNIALKTLNLSGNPIGDEGVKCLCDILVDNAGVERLQLSSVDLRDE 261 (597)
Q Consensus 182 l~~~l~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~~~l~~~ 261 (597)
++.-++.+.+|+.|++..|+|.. ++ .+..|..|++|+++.|+|.-.. ++.+.++++|..||+++|+++.
T Consensus 198 lP~~lg~l~~L~~LyL~~Nki~~-----lP-ef~gcs~L~Elh~g~N~i~~lp----ae~~~~L~~l~vLDLRdNklke- 266 (565)
T KOG0472|consen 198 LPPELGGLESLELLYLRRNKIRF-----LP-EFPGCSLLKELHVGENQIEMLP----AEHLKHLNSLLVLDLRDNKLKE- 266 (565)
T ss_pred CChhhcchhhhHHHHhhhccccc-----CC-CCCccHHHHHHHhcccHHHhhH----HHHhcccccceeeecccccccc-
Confidence 44455555666666666666541 22 3455666777777766664432 1223345777777777777765
Q ss_pred HHHHHHHHHHcCCCccEEEeccCCCChhhHHHHHHHHhhCCCccEEEcCCCCCChHHH-------HHHHHHhhc------
Q 007577 262 GAKAIAELLKNNSILRVLELNNNMIDYSGFTSLAEALLENSTIRSLHLNGNYGGALGA-------NALAKGLEG------ 328 (597)
Q Consensus 262 ~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~-------~~l~~~l~~------ 328 (597)
++..+..+++|+.||+++|.|+ .++-.++++ +|+.|.+.||.+...-. +.+.+.+..
T Consensus 267 ----~Pde~clLrsL~rLDlSNN~is-----~Lp~sLgnl-hL~~L~leGNPlrTiRr~ii~~gT~~vLKyLrs~~~~dg 336 (565)
T KOG0472|consen 267 ----VPDEICLLRSLERLDLSNNDIS-----SLPYSLGNL-HLKFLALEGNPLRTIRREIISKGTQEVLKYLRSKIKDDG 336 (565)
T ss_pred ----CchHHHHhhhhhhhcccCCccc-----cCCcccccc-eeeehhhcCCchHHHHHHHHcccHHHHHHHHHHhhccCC
Confidence 3344444567777777777763 344455555 67777777775433211 111111111
Q ss_pred ------------------------CCCCCEEEccCCCCChHHHHHHHHhhhcCccccceeeccCCCCChhHHHHHHHHHH
Q 007577 329 ------------------------NKSLRELHLHGNSIGDEGIRALMSGLSSRKGKLAVLDIGNNSISAKGAFHVAEYIK 384 (597)
Q Consensus 329 ------------------------~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~ 384 (597)
..+.+.|++++-.+++... .+++..... -....+++.|++.. +|..+.
T Consensus 337 lS~se~~~e~~~t~~~~~~~~~~~~i~tkiL~~s~~qlt~VPd-EVfea~~~~--~Vt~VnfskNqL~e-----lPk~L~ 408 (565)
T KOG0472|consen 337 LSQSEGGTETAMTLPSESFPDIYAIITTKILDVSDKQLTLVPD-EVFEAAKSE--IVTSVNFSKNQLCE-----LPKRLV 408 (565)
T ss_pred CCCCcccccccCCCCCCcccchhhhhhhhhhcccccccccCCH-HHHHHhhhc--ceEEEecccchHhh-----hhhhhH
Confidence 1123444444443332111 111111111 24556666665554 444444
Q ss_pred cCCCC-cEEEccCCCCCcHHHHHHHHHHhcCCCccEEEccCCCCChHHHHHHHHHhhcCCCcCEEECcCCCCCHHHHHHH
Q 007577 385 NCKSL-LWINLYMNDIGDEGAEKIADALKQNRTITTIDLGGNNIHSKGASAIARVLKDNSVITSLDLAYNPIGADGAKAL 463 (597)
Q Consensus 385 ~~~~L-~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l 463 (597)
.++.+ +.+.+++|.++- ++..++..++|..|+|++|.+.+ ++.-++..-.|+.||+++|.+. .+
T Consensus 409 ~lkelvT~l~lsnn~isf-----v~~~l~~l~kLt~L~L~NN~Ln~-----LP~e~~~lv~Lq~LnlS~NrFr-----~l 473 (565)
T KOG0472|consen 409 ELKELVTDLVLSNNKISF-----VPLELSQLQKLTFLDLSNNLLND-----LPEEMGSLVRLQTLNLSFNRFR-----ML 473 (565)
T ss_pred HHHHHHHHHHhhcCcccc-----chHHHHhhhcceeeecccchhhh-----cchhhhhhhhhheecccccccc-----cc
Confidence 43333 233455555543 45566778999999999998776 3334444567999999999764 34
Q ss_pred HHHHhhCCCcCEEecCCCCCChhHHHHHHHHHhcCCCccEEEccCCCCChHHHHHHHHHHhhcCccccEEEccCCCCCh
Q 007577 464 SEVLKFHGNINTLKLGWCQIGASGAEFVADMLRYNNTISILDLRANGLRDEGAKCLAQSFKVVNEALTSIDLAFNEIRD 542 (597)
Q Consensus 464 ~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~n~i~~~~~~~l~~~l~~~n~~L~~L~Ls~n~i~~ 542 (597)
++.+.....++.+-.++|+++...+..+. .+.+|..||+.+|.+... +..++.+ .+|++|++++|.|..
T Consensus 474 P~~~y~lq~lEtllas~nqi~~vd~~~l~----nm~nL~tLDL~nNdlq~I-Pp~Lgnm-----tnL~hLeL~gNpfr~ 542 (565)
T KOG0472|consen 474 PECLYELQTLETLLASNNQIGSVDPSGLK----NMRNLTTLDLQNNDLQQI-PPILGNM-----TNLRHLELDGNPFRQ 542 (565)
T ss_pred hHHHhhHHHHHHHHhccccccccChHHhh----hhhhcceeccCCCchhhC-Chhhccc-----cceeEEEecCCccCC
Confidence 45544456788888888999887666444 448999999999987765 4456666 789999999999983
No 18
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=99.71 E-value=2.9e-16 Score=143.70 Aligned_cols=271 Identities=18% Similarity=0.171 Sum_probs=186.6
Q ss_pred ccccchhhhHHHHHHHHHHHHhcCCCcEEEcCCCCCC------HHHHHHHHHHhccCCCccEEEeccCCCCHHHHHHHHH
Q 007577 139 LSGFTGKLFRESKQTLNEFAKELRAFSSVDMSGRNFG------DEGLFFLAESLGYNQTAEEVSFAANGITAAGIKAFDG 212 (597)
Q Consensus 139 ~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~Ls~~~l~------~~~~~~l~~~l~~~~~L~~L~L~~~~l~~~~~~~l~~ 212 (597)
+...+..+..+..+.+...+.+-++|+..+++.-..+ ...+..+.+++.+|++|+.++|++|.++......+..
T Consensus 35 vdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~~~~e~L~d 114 (388)
T COG5238 35 VDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGSEFPEELGD 114 (388)
T ss_pred EeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCcccchHHHH
Confidence 3445667788888999999999999999999875332 2356677888899999999999999999888888999
Q ss_pred HhhhCCCccEEEccCCCCChhHHHHHHHHHhcCCCcCEEEecCCCCChHHHHHHHHHHHcCCCccEEEeccCCCChhhHH
Q 007577 213 VLQSNIALKTLNLSGNPIGDEGVKCLCDILVDNAGVERLQLSSVDLRDEGAKAIAELLKNNSILRVLELNNNMIDYSGFT 292 (597)
Q Consensus 213 ~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~ 292 (597)
.+.+.+.|++|.+++|.++..+-..++..+.++.. | +-..+-|.|+......|++..-...
T Consensus 115 ~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~--------n-----------KKaa~kp~Le~vicgrNRlengs~~ 175 (388)
T COG5238 115 LISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAY--------N-----------KKAADKPKLEVVICGRNRLENGSKE 175 (388)
T ss_pred HHhcCCCceeEEeecCCCCccchhHHHHHHHHHHH--------H-----------hhhccCCCceEEEeccchhccCcHH
Confidence 99999999999999999987766666655432110 1 0111225666666666666444333
Q ss_pred HHHHHHhhCCCccEEEcCCCCCChHHHHHHH-HHhhcCCCCCEEEccCCCCChHHHHHHHHhhhcCccccceeeccCCCC
Q 007577 293 SLAEALLENSTIRSLHLNGNYGGALGANALA-KGLEGNKSLRELHLHGNSIGDEGIRALMSGLSSRKGKLAVLDIGNNSI 371 (597)
Q Consensus 293 ~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~-~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l 371 (597)
..+..+..-..|+++.+..|.|...+..++. ..+..+.+|+.|++..|.++..+-..++..+..+. .|+.|.+.+|-+
T Consensus 176 ~~a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~-~lrEL~lnDCll 254 (388)
T COG5238 176 LSAALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWN-LLRELRLNDCLL 254 (388)
T ss_pred HHHHHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccc-hhhhccccchhh
Confidence 3343443335677777777777766665543 34667788888888888888888888887776554 588999999988
Q ss_pred ChhHHHHHHHHHHc--CCCCcEEEccCCCCCcHHHHH--HHHHHh-cCCCccEEEccCCCCCh
Q 007577 372 SAKGAFHVAEYIKN--CKSLLWINLYMNDIGDEGAEK--IADALK-QNRTITTIDLGGNNIHS 429 (597)
Q Consensus 372 ~~~~~~~l~~~l~~--~~~L~~L~Ls~n~l~~~~~~~--l~~~l~-~~~~L~~L~L~~n~l~~ 429 (597)
+..|...+...+.. .|+|..|...+|.+....+.. +..... .++-|..|.+.||+|..
T Consensus 255 s~~G~~~v~~~f~e~~~p~l~~L~~~Yne~~~~~i~~~~l~~~e~~~~p~L~~le~ngNr~~E 317 (388)
T COG5238 255 SNEGVKSVLRRFNEKFVPNLMPLPGDYNERRGGIILDISLNEFEQDAVPLLVDLERNGNRIKE 317 (388)
T ss_pred ccccHHHHHHHhhhhcCCCccccccchhhhcCceeeeechhhhhhcccHHHHHHHHccCcchh
Confidence 88888777776654 578888888888544321111 111111 23445555555665544
No 19
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.66 E-value=1.5e-16 Score=172.90 Aligned_cols=267 Identities=18% Similarity=0.194 Sum_probs=168.5
Q ss_pred CCCcEEEcCCCCCCHHHHHHHHHHhccCCCccEEEeccCCCCHHHHHHHHHHhhhCCCccEEEccCCCCChhHHHHHHHH
Q 007577 162 RAFSSVDMSGRNFGDEGLFFLAESLGYNQTAEEVSFAANGITAAGIKAFDGVLQSNIALKTLNLSGNPIGDEGVKCLCDI 241 (597)
Q Consensus 162 ~~L~~L~Ls~~~l~~~~~~~l~~~l~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~ 241 (597)
..-..|+++++.++. ++..+. .+|+.|++.+|+++.. +. ..++|++|++++|+++... ..
T Consensus 201 ~~~~~LdLs~~~Lts-----LP~~l~--~~L~~L~L~~N~Lt~L-----P~---lp~~Lk~LdLs~N~LtsLP-----~l 260 (788)
T PRK15387 201 NGNAVLNVGESGLTT-----LPDCLP--AHITTLVIPDNNLTSL-----PA---LPPELRTLEVSGNQLTSLP-----VL 260 (788)
T ss_pred CCCcEEEcCCCCCCc-----CCcchh--cCCCEEEccCCcCCCC-----CC---CCCCCcEEEecCCccCccc-----Cc
Confidence 446678888887764 344333 4788888888887642 21 1367888888888887532 11
Q ss_pred HhcCCCcCEEEecCCCCChHHHHHHHHHHHcCCCccEEEeccCCCChhhHHHHHHHHhhCCCccEEEcCCCCCChHHHHH
Q 007577 242 LVDNAGVERLQLSSVDLRDEGAKAIAELLKNNSILRVLELNNNMIDYSGFTSLAEALLENSTIRSLHLNGNYGGALGANA 321 (597)
Q Consensus 242 l~~~~~L~~L~Ls~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~ 321 (597)
.++|+.|++++|.++. ++... .+|+.|++++|+++. ++. ..++|+.|++++|.+...+.
T Consensus 261 ---p~sL~~L~Ls~N~L~~-----Lp~lp---~~L~~L~Ls~N~Lt~-----LP~---~p~~L~~LdLS~N~L~~Lp~-- 319 (788)
T PRK15387 261 ---PPGLLELSIFSNPLTH-----LPALP---SGLCKLWIFGNQLTS-----LPV---LPPGLQELSVSDNQLASLPA-- 319 (788)
T ss_pred ---ccccceeeccCCchhh-----hhhch---hhcCEEECcCCcccc-----ccc---cccccceeECCCCccccCCC--
Confidence 3678888888887765 22221 457888888888752 222 23678888888887765321
Q ss_pred HHHHhhcCCCCCEEEccCCCCChHHHHHHHHhhhcCccccceeeccCCCCChhHHHHHHHHHHcCCCCcEEEccCCCCCc
Q 007577 322 LAKGLEGNKSLRELHLHGNSIGDEGIRALMSGLSSRKGKLAVLDIGNNSISAKGAFHVAEYIKNCKSLLWINLYMNDIGD 401 (597)
Q Consensus 322 l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~ 401 (597)
....|+.|++++|.++.. +.+ ..+|+.|+|++|+++. ++.. ..+|+.|++++|.|+.
T Consensus 320 ------lp~~L~~L~Ls~N~L~~L--P~l-------p~~Lq~LdLS~N~Ls~-----LP~l---p~~L~~L~Ls~N~L~~ 376 (788)
T PRK15387 320 ------LPSELCKLWAYNNQLTSL--PTL-------PSGLQELSVSDNQLAS-----LPTL---PSELYKLWAYNNRLTS 376 (788)
T ss_pred ------CcccccccccccCccccc--ccc-------ccccceEecCCCccCC-----CCCC---Ccccceehhhcccccc
Confidence 123577788888877641 111 1268888888888776 3321 3467778888887764
Q ss_pred HHHHHHHHHHhcCCCccEEEccCCCCChHHHHHHHHHhhcCCCcCEEECcCCCCCHHHHHHHHHHHhhCCCcCEEecCCC
Q 007577 402 EGAEKIADALKQNRTITTIDLGGNNIHSKGASAIARVLKDNSVITSLDLAYNPIGADGAKALSEVLKFHGNINTLKLGWC 481 (597)
Q Consensus 402 ~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n 481 (597)
++.. ..+|+.|++++|.|+.. +.. .++|+.|++++|.++.. +.. ..+|+.|++++|
T Consensus 377 -----LP~l---~~~L~~LdLs~N~Lt~L-----P~l---~s~L~~LdLS~N~LssI-----P~l---~~~L~~L~Ls~N 432 (788)
T PRK15387 377 -----LPAL---PSGLKELIVSGNRLTSL-----PVL---PSELKELMVSGNRLTSL-----PML---PSGLLSLSVYRN 432 (788)
T ss_pred -----Cccc---ccccceEEecCCcccCC-----CCc---ccCCCEEEccCCcCCCC-----Ccc---hhhhhhhhhccC
Confidence 2221 24678888888877642 111 25678888888877642 111 135677788888
Q ss_pred CCChhHHHHHHHHHhcCCCccEEEccCCCCChHHHHHHHH
Q 007577 482 QIGASGAEFVADMLRYNNTISILDLRANGLRDEGAKCLAQ 521 (597)
Q Consensus 482 ~i~~~~~~~l~~~l~~~~~L~~L~l~~n~i~~~~~~~l~~ 521 (597)
+|+.. ...+..+++|+.|++++|.+++..+..+..
T Consensus 433 qLt~L-----P~sl~~L~~L~~LdLs~N~Ls~~~~~~L~~ 467 (788)
T PRK15387 433 QLTRL-----PESLIHLSSETTVNLEGNPLSERTLQALRE 467 (788)
T ss_pred ccccc-----ChHHhhccCCCeEECCCCCCCchHHHHHHH
Confidence 77643 223444577888888888877766665544
No 20
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=99.66 E-value=2.2e-16 Score=153.03 Aligned_cols=282 Identities=21% Similarity=0.255 Sum_probs=145.6
Q ss_pred hhCCCccEEEccCC-CCChhHHHHHHHHHhcCCCcCEEEecCC-CCChHHHHHHHHHHHcCCCccEEEeccC-CCChhhH
Q 007577 215 QSNIALKTLNLSGN-PIGDEGVKCLCDILVDNAGVERLQLSSV-DLRDEGAKAIAELLKNNSILRVLELNNN-MIDYSGF 291 (597)
Q Consensus 215 ~~~~~L~~L~Ls~n-~l~~~~~~~l~~~l~~~~~L~~L~Ls~~-~l~~~~~~~l~~~l~~~~~L~~L~Ls~n-~i~~~~~ 291 (597)
.+|+++++|++.++ ++++.....++. .|+.|++|++..| .+|+..++.+++. |++|++|+++++ .|++.++
T Consensus 161 ~~CpnIehL~l~gc~~iTd~s~~sla~---~C~~l~~l~L~~c~~iT~~~Lk~la~g---C~kL~~lNlSwc~qi~~~gv 234 (483)
T KOG4341|consen 161 SNCPNIEHLALYGCKKITDSSLLSLAR---YCRKLRHLNLHSCSSITDVSLKYLAEG---CRKLKYLNLSWCPQISGNGV 234 (483)
T ss_pred hhCCchhhhhhhcceeccHHHHHHHHH---hcchhhhhhhcccchhHHHHHHHHHHh---hhhHHHhhhccCchhhcCcc
Confidence 34444555544442 334433333332 2455555555553 3444444333332 455555555555 4444444
Q ss_pred HHHHHHHhhCCCccEEEcCCCCCChHHHHHHHHHhhcCCCCCEEEccCC-CCChHHHHHHHHhhhcCccccceeeccCC-
Q 007577 292 TSLAEALLENSTIRSLHLNGNYGGALGANALAKGLEGNKSLRELHLHGN-SIGDEGIRALMSGLSSRKGKLAVLDIGNN- 369 (597)
Q Consensus 292 ~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n-~i~~~~~~~l~~~l~~~~~~L~~L~Ls~n- 369 (597)
+.+.+ .+..++.+.+.+|. +.+.+.+...-..+..+..+++..| .++++++..+..+.. .|+.|+.++|
T Consensus 235 ~~~~r---G~~~l~~~~~kGC~--e~~le~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~i~~~c~----~lq~l~~s~~t 305 (483)
T KOG4341|consen 235 QALQR---GCKELEKLSLKGCL--ELELEALLKAAAYCLEILKLNLQHCNQLTDEDLWLIACGCH----ALQVLCYSSCT 305 (483)
T ss_pred hHHhc---cchhhhhhhhcccc--cccHHHHHHHhccChHhhccchhhhccccchHHHHHhhhhh----HhhhhcccCCC
Confidence 44443 23345555444442 1222233232334455555555454 456665554443322 5666666665
Q ss_pred CCChhHHHHHHHHHHcCCCCcEEEccCC-CCCcHHHHHHHHHHhcCCCccEEEccCCCCChHHHHHHHHHhhcCCCcCEE
Q 007577 370 SISAKGAFHVAEYIKNCKSLLWINLYMN-DIGDEGAEKIADALKQNRTITTIDLGGNNIHSKGASAIARVLKDNSVITSL 448 (597)
Q Consensus 370 ~l~~~~~~~l~~~l~~~~~L~~L~Ls~n-~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L 448 (597)
.+++. .+...-.++++|+.|-++.| ++++.++..+.. +++.|+.+++.++....++ .+...-.+|+.|+.|
T Consensus 306 ~~~d~---~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~r---n~~~Le~l~~e~~~~~~d~--tL~sls~~C~~lr~l 377 (483)
T KOG4341|consen 306 DITDE---VLWALGQHCHNLQVLELSGCQQFSDRGFTMLGR---NCPHLERLDLEECGLITDG--TLASLSRNCPRLRVL 377 (483)
T ss_pred CCchH---HHHHHhcCCCceEEEeccccchhhhhhhhhhhc---CChhhhhhcccccceehhh--hHhhhccCCchhccC
Confidence 33332 12223345666777777666 566665544443 3566777777776544433 344444556777777
Q ss_pred ECcCC-CCCHHHHHHHHHHHhhCCCcCEEecCCCCC-ChhHHHHHHHHHhcCCCccEEEccCC-CCChHHHHHHHHHH
Q 007577 449 DLAYN-PIGADGAKALSEVLKFHGNINTLKLGWCQI-GASGAEFVADMLRYNNTISILDLRAN-GLRDEGAKCLAQSF 523 (597)
Q Consensus 449 ~Ls~n-~i~~~~~~~l~~~l~~~~~L~~L~L~~n~i-~~~~~~~l~~~l~~~~~L~~L~l~~n-~i~~~~~~~l~~~l 523 (597)
.++.| .|+++|+..+...-.....|..+.+++|.. ++...+ -+..|++|+.+++.++ .++..++..+...+
T Consensus 378 slshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le----~l~~c~~Leri~l~~~q~vtk~~i~~~~~~l 451 (483)
T KOG4341|consen 378 SLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLE----HLSICRNLERIELIDCQDVTKEAISRFATHL 451 (483)
T ss_pred ChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHH----HHhhCcccceeeeechhhhhhhhhHHHHhhC
Confidence 77766 456666666666555556677777777753 333222 2344567777777666 56666666665554
No 21
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=99.65 E-value=2.4e-16 Score=152.78 Aligned_cols=302 Identities=21% Similarity=0.270 Sum_probs=220.6
Q ss_pred CccEEEccCCCCChhHHHHHHHHHhcCCCcCEEEecCC-CCChHHHHHHHHHHHcCCCccEEEeccC-CCChhhHHHHHH
Q 007577 219 ALKTLNLSGNPIGDEGVKCLCDILVDNAGVERLQLSSV-DLRDEGAKAIAELLKNNSILRVLELNNN-MIDYSGFTSLAE 296 (597)
Q Consensus 219 ~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~~-~l~~~~~~~l~~~l~~~~~L~~L~Ls~n-~i~~~~~~~l~~ 296 (597)
.|++|.+.++.= .+...+......|+++++|.+.+| ++++.....+++. |++|++|++..| .+++..++.+.+
T Consensus 139 ~lk~LSlrG~r~--v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~---C~~l~~l~L~~c~~iT~~~Lk~la~ 213 (483)
T KOG4341|consen 139 FLKELSLRGCRA--VGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARY---CRKLRHLNLHSCSSITDVSLKYLAE 213 (483)
T ss_pred cccccccccccc--CCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHh---cchhhhhhhcccchhHHHHHHHHHH
Confidence 588888888632 233345555667999999999998 4788766666554 789999999995 788877776665
Q ss_pred HHhhCCCccEEEcCCCC-CChHHHHHHHHHhhcCCCCCEEEccCC-CCChHHHHHHHHhhhcCccccceeeccCC-CCCh
Q 007577 297 ALLENSTIRSLHLNGNY-GGALGANALAKGLEGNKSLRELHLHGN-SIGDEGIRALMSGLSSRKGKLAVLDIGNN-SISA 373 (597)
Q Consensus 297 ~l~~~~~L~~L~L~~n~-i~~~~~~~l~~~l~~~~~L~~L~Ls~n-~i~~~~~~~l~~~l~~~~~~L~~L~Ls~n-~l~~ 373 (597)
.|++|++|+++.|. ++..+++.+ ..+++.++.+.+.|| .++.+.+..+. ..+..+..+++.+| .+++
T Consensus 214 ---gC~kL~~lNlSwc~qi~~~gv~~~---~rG~~~l~~~~~kGC~e~~le~l~~~~----~~~~~i~~lnl~~c~~lTD 283 (483)
T KOG4341|consen 214 ---GCRKLKYLNLSWCPQISGNGVQAL---QRGCKELEKLSLKGCLELELEALLKAA----AYCLEILKLNLQHCNQLTD 283 (483)
T ss_pred ---hhhhHHHhhhccCchhhcCcchHH---hccchhhhhhhhcccccccHHHHHHHh----ccChHhhccchhhhccccc
Confidence 48999999999884 555555444 456777888888877 34444333332 34446788887776 5777
Q ss_pred hHHHHHHHHHHcCCCCcEEEccCC-CCCcHHHHHHHHHHhcCCCccEEEccCC-CCChHHHHHHHHHhhcCCCcCEEECc
Q 007577 374 KGAFHVAEYIKNCKSLLWINLYMN-DIGDEGAEKIADALKQNRTITTIDLGGN-NIHSKGASAIARVLKDNSVITSLDLA 451 (597)
Q Consensus 374 ~~~~~l~~~l~~~~~L~~L~Ls~n-~l~~~~~~~l~~~l~~~~~L~~L~L~~n-~l~~~~~~~l~~~l~~~~~L~~L~Ls 451 (597)
.+...+. ..+..|+.|+.+++ ++++..+..+.+ ++.+|+.|-+++| ++++.+...++.. |+.|+.+++.
T Consensus 284 ~~~~~i~---~~c~~lq~l~~s~~t~~~d~~l~aLg~---~~~~L~~l~l~~c~~fsd~~ft~l~rn---~~~Le~l~~e 354 (483)
T KOG4341|consen 284 EDLWLIA---CGCHALQVLCYSSCTDITDEVLWALGQ---HCHNLQVLELSGCQQFSDRGFTMLGRN---CPHLERLDLE 354 (483)
T ss_pred hHHHHHh---hhhhHhhhhcccCCCCCchHHHHHHhc---CCCceEEEeccccchhhhhhhhhhhcC---Chhhhhhccc
Confidence 7544433 56788999999887 777764444433 4789999999999 5888887776544 7999999999
Q ss_pred CCCCCHHHHHHHHHHHhhCCCcCEEecCCCC-CChhHHHHHHHHHhcCCCccEEEccCC-CCChHHHHHHHHHHhhcCcc
Q 007577 452 YNPIGADGAKALSEVLKFHGNINTLKLGWCQ-IGASGAEFVADMLRYNNTISILDLRAN-GLRDEGAKCLAQSFKVVNEA 529 (597)
Q Consensus 452 ~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~-i~~~~~~~l~~~l~~~~~L~~L~l~~n-~i~~~~~~~l~~~l~~~n~~ 529 (597)
.+....++ .+.+.-.+|+.|++|.++.|. |++.+...+...-.....|..+.++++ .+++.....+..+ ++
T Consensus 355 ~~~~~~d~--tL~sls~~C~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c-----~~ 427 (483)
T KOG4341|consen 355 ECGLITDG--TLASLSRNCPRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLSIC-----RN 427 (483)
T ss_pred ccceehhh--hHhhhccCCchhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHHHhhC-----cc
Confidence 99655443 455666779999999999996 888888888777677788999999999 5555555545443 77
Q ss_pred ccEEEccCC-CCChHHHHHHHHH
Q 007577 530 LTSIDLAFN-EIRDDGAFAIAQA 551 (597)
Q Consensus 530 L~~L~Ls~n-~i~~~~~~~l~~~ 551 (597)
|+.+++-++ +++..+...+.+.
T Consensus 428 Leri~l~~~q~vtk~~i~~~~~~ 450 (483)
T KOG4341|consen 428 LERIELIDCQDVTKEAISRFATH 450 (483)
T ss_pred cceeeeechhhhhhhhhHHHHhh
Confidence 999999888 6777777777654
No 22
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.65 E-value=1.3e-16 Score=173.25 Aligned_cols=267 Identities=17% Similarity=0.163 Sum_probs=154.9
Q ss_pred CCccEEEeccCCCCHHHHHHHHHHhhhCCCccEEEccCCCCChhHHHHHHHHHhcCCCcCEEEecCCCCChHHHHHHHHH
Q 007577 190 QTAEEVSFAANGITAAGIKAFDGVLQSNIALKTLNLSGNPIGDEGVKCLCDILVDNAGVERLQLSSVDLRDEGAKAIAEL 269 (597)
Q Consensus 190 ~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~~~l~~~~~~~l~~~ 269 (597)
..-..|+++++.++. ++..+. ++|+.|++++|+++.. +. ..++|++|++++|+++.. +..
T Consensus 201 ~~~~~LdLs~~~Lts-----LP~~l~--~~L~~L~L~~N~Lt~L-----P~---lp~~Lk~LdLs~N~LtsL-----P~l 260 (788)
T PRK15387 201 NGNAVLNVGESGLTT-----LPDCLP--AHITTLVIPDNNLTSL-----PA---LPPELRTLEVSGNQLTSL-----PVL 260 (788)
T ss_pred CCCcEEEcCCCCCCc-----CCcchh--cCCCEEEccCCcCCCC-----CC---CCCCCcEEEecCCccCcc-----cCc
Confidence 345567777777653 222222 3577777777777642 21 136777777777777653 211
Q ss_pred HHcCCCccEEEeccCCCChhhHHHHHHHHhhCCCccEEEcCCCCCChHHHHHHHHHhhcCCCCCEEEccCCCCChHHHHH
Q 007577 270 LKNNSILRVLELNNNMIDYSGFTSLAEALLENSTIRSLHLNGNYGGALGANALAKGLEGNKSLRELHLHGNSIGDEGIRA 349 (597)
Q Consensus 270 l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~ 349 (597)
.++|+.|++++|.++ .++.. ...|+.|++++|.++..+. ..++|+.|++++|.+... +.
T Consensus 261 ---p~sL~~L~Ls~N~L~-----~Lp~l---p~~L~~L~Ls~N~Lt~LP~--------~p~~L~~LdLS~N~L~~L--p~ 319 (788)
T PRK15387 261 ---PPGLLELSIFSNPLT-----HLPAL---PSGLCKLWIFGNQLTSLPV--------LPPGLQELSVSDNQLASL--PA 319 (788)
T ss_pred ---ccccceeeccCCchh-----hhhhc---hhhcCEEECcCCccccccc--------cccccceeECCCCccccC--CC
Confidence 256777777777763 23321 2467777777777664321 235677777777776541 11
Q ss_pred HHHhhhcCccccceeeccCCCCChhHHHHHHHHHHcCCCCcEEEccCCCCCcHHHHHHHHHHhcCCCccEEEccCCCCCh
Q 007577 350 LMSGLSSRKGKLAVLDIGNNSISAKGAFHVAEYIKNCKSLLWINLYMNDIGDEGAEKIADALKQNRTITTIDLGGNNIHS 429 (597)
Q Consensus 350 l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~ 429 (597)
+ ..+|+.|++++|.++. ++.. ..+|++|+|++|+|+. ++.. ..+|+.|++++|.|+.
T Consensus 320 l-------p~~L~~L~Ls~N~L~~-----LP~l---p~~Lq~LdLS~N~Ls~-----LP~l---p~~L~~L~Ls~N~L~~ 376 (788)
T PRK15387 320 L-------PSELCKLWAYNNQLTS-----LPTL---PSGLQELSVSDNQLAS-----LPTL---PSELYKLWAYNNRLTS 376 (788)
T ss_pred C-------cccccccccccCcccc-----cccc---ccccceEecCCCccCC-----CCCC---Ccccceehhhcccccc
Confidence 1 1257777777777765 3321 1367777777777764 2221 2467777777777664
Q ss_pred HHHHHHHHHhhcCCCcCEEECcCCCCCHHHHHHHHHHHhhCCCcCEEecCCCCCChhHHHHHHHHHhcCCCccEEEccCC
Q 007577 430 KGASAIARVLKDNSVITSLDLAYNPIGADGAKALSEVLKFHGNINTLKLGWCQIGASGAEFVADMLRYNNTISILDLRAN 509 (597)
Q Consensus 430 ~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~n 509 (597)
++.. ..+|+.|++++|+++... .. .++|+.|++++|+++.... + ..+|+.|++++|
T Consensus 377 -----LP~l---~~~L~~LdLs~N~Lt~LP-----~l---~s~L~~LdLS~N~LssIP~--l------~~~L~~L~Ls~N 432 (788)
T PRK15387 377 -----LPAL---PSGLKELIVSGNRLTSLP-----VL---PSELKELMVSGNRLTSLPM--L------PSGLLSLSVYRN 432 (788)
T ss_pred -----Cccc---ccccceEEecCCcccCCC-----Cc---ccCCCEEEccCCcCCCCCc--c------hhhhhhhhhccC
Confidence 2221 145777777777765321 11 2467777777777764321 1 135677777777
Q ss_pred CCChHHHHHHHHHHhhcCccccEEEccCCCCChHHHHHHHH
Q 007577 510 GLRDEGAKCLAQSFKVVNEALTSIDLAFNEIRDDGAFAIAQ 550 (597)
Q Consensus 510 ~i~~~~~~~l~~~l~~~n~~L~~L~Ls~n~i~~~~~~~l~~ 550 (597)
+|+.. +..+..+ +.|+.|+|++|.++...+..+..
T Consensus 433 qLt~L-P~sl~~L-----~~L~~LdLs~N~Ls~~~~~~L~~ 467 (788)
T PRK15387 433 QLTRL-PESLIHL-----SSETTVNLEGNPLSERTLQALRE 467 (788)
T ss_pred ccccc-ChHHhhc-----cCCCeEECCCCCCCchHHHHHHH
Confidence 77643 2334433 56777777777777666665533
No 23
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.61 E-value=7e-16 Score=180.11 Aligned_cols=199 Identities=18% Similarity=0.227 Sum_probs=105.0
Q ss_pred HHHhcCCCcEEEcCCCCCCH--HHHHHHHHHhccC-CCccEEEeccCCCCHHHHHHHHHHhhhCCCccEEEccCCCCChh
Q 007577 157 FAKELRAFSSVDMSGRNFGD--EGLFFLAESLGYN-QTAEEVSFAANGITAAGIKAFDGVLQSNIALKTLNLSGNPIGDE 233 (597)
Q Consensus 157 ~~~~~~~L~~L~Ls~~~l~~--~~~~~l~~~l~~~-~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~ 233 (597)
.+..+++|+.|.+..+.+.. .....++..+..+ .+|+.|.+.++.+.. ++..+ ...+|++|++++|.+..
T Consensus 553 aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~~-----lP~~f-~~~~L~~L~L~~s~l~~- 625 (1153)
T PLN03210 553 AFKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLRC-----MPSNF-RPENLVKLQMQGSKLEK- 625 (1153)
T ss_pred HHhcCccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCCCCC-----CCCcC-CccCCcEEECcCccccc-
Confidence 35566777777775543211 0000122223332 356667766665432 22112 23567777777776653
Q ss_pred HHHHHHHHHhcCCCcCEEEecCCC-CChHHHHHHHHHHHcCCCccEEEeccCCCChhhHHHHHHHHhhCCCccEEEcCCC
Q 007577 234 GVKCLCDILVDNAGVERLQLSSVD-LRDEGAKAIAELLKNNSILRVLELNNNMIDYSGFTSLAEALLENSTIRSLHLNGN 312 (597)
Q Consensus 234 ~~~~l~~~l~~~~~L~~L~Ls~~~-l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n 312 (597)
+...+..+++|+.|+|+++. +.. ++. +..+++|++|++++|..- ..++..+..+++|+.|++++|
T Consensus 626 ----L~~~~~~l~~Lk~L~Ls~~~~l~~-----ip~-ls~l~~Le~L~L~~c~~L----~~lp~si~~L~~L~~L~L~~c 691 (1153)
T PLN03210 626 ----LWDGVHSLTGLRNIDLRGSKNLKE-----IPD-LSMATNLETLKLSDCSSL----VELPSSIQYLNKLEDLDMSRC 691 (1153)
T ss_pred ----cccccccCCCCCEEECCCCCCcCc-----CCc-cccCCcccEEEecCCCCc----cccchhhhccCCCCEEeCCCC
Confidence 33334456777888877654 222 211 344577778888776431 345566667777888888776
Q ss_pred C-CChHHHHHHHHHhhcCCCCCEEEccCCCCChHHHHHHHHhhhcCccccceeeccCCCCChhHHHHHHHHHHcCCCCcE
Q 007577 313 Y-GGALGANALAKGLEGNKSLRELHLHGNSIGDEGIRALMSGLSSRKGKLAVLDIGNNSISAKGAFHVAEYIKNCKSLLW 391 (597)
Q Consensus 313 ~-i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~ 391 (597)
. +...+ ..+ ++++|+.|++++|..... ++ ....+|+.|++++|.+.. ++..+ .+++|++
T Consensus 692 ~~L~~Lp-----~~i-~l~sL~~L~Lsgc~~L~~----~p----~~~~nL~~L~L~~n~i~~-----lP~~~-~l~~L~~ 751 (1153)
T PLN03210 692 ENLEILP-----TGI-NLKSLYRLNLSGCSRLKS----FP----DISTNISWLDLDETAIEE-----FPSNL-RLENLDE 751 (1153)
T ss_pred CCcCccC-----CcC-CCCCCCEEeCCCCCCccc----cc----cccCCcCeeecCCCcccc-----ccccc-ccccccc
Confidence 3 32221 111 466777777777743211 11 112367777777776554 33222 3445555
Q ss_pred EEccC
Q 007577 392 INLYM 396 (597)
Q Consensus 392 L~Ls~ 396 (597)
|++.+
T Consensus 752 L~l~~ 756 (1153)
T PLN03210 752 LILCE 756 (1153)
T ss_pred ccccc
Confidence 55544
No 24
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.59 E-value=1.6e-16 Score=152.70 Aligned_cols=382 Identities=19% Similarity=0.213 Sum_probs=203.3
Q ss_pred HHHHHHhc-CCCcEEEcCCCCCCHHHHHHHHHHhccCCCccEEEeccCCCCHHHHHHHHHHhhhCCCccEEEccC-CCCC
Q 007577 154 LNEFAKEL-RAFSSVDMSGRNFGDEGLFFLAESLGYNQTAEEVSFAANGITAAGIKAFDGVLQSNIALKTLNLSG-NPIG 231 (597)
Q Consensus 154 l~~~~~~~-~~L~~L~Ls~~~l~~~~~~~l~~~l~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~-n~l~ 231 (597)
+.++-.++ +...+|+|..|.|+... ..+|..+++|+.|||++|.|+.++..+|.+. ++|.+|-+.+ |+|+
T Consensus 58 L~eVP~~LP~~tveirLdqN~I~~iP----~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL----~~l~~Lvlyg~NkI~ 129 (498)
T KOG4237|consen 58 LTEVPANLPPETVEIRLDQNQISSIP----PGAFKTLHRLRRLDLSKNNISFIAPDAFKGL----ASLLSLVLYGNNKIT 129 (498)
T ss_pred cccCcccCCCcceEEEeccCCcccCC----hhhccchhhhceecccccchhhcChHhhhhh----HhhhHHHhhcCCchh
Confidence 33444455 44778999999887654 4567778999999999999988777776644 5566555544 9998
Q ss_pred hhHHHHHHHHHhcCCCcCEEEecCCCCChHHHHHHHHHHHcCCCccEEEeccCCCChhhHHHHHH-HHhhCCCccEEEcC
Q 007577 232 DEGVKCLCDILVDNAGVERLQLSSVDLRDEGAKAIAELLKNNSILRVLELNNNMIDYSGFTSLAE-ALLENSTIRSLHLN 310 (597)
Q Consensus 232 ~~~~~~l~~~l~~~~~L~~L~Ls~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~-~l~~~~~L~~L~L~ 310 (597)
+.....+.. +..++.|.+.-|++.-.-..++.+ +++|..|.+.+|.+ +.++. .+..+..++++.+.
T Consensus 130 ~l~k~~F~g----L~slqrLllNan~i~Cir~~al~d----L~~l~lLslyDn~~-----q~i~~~tf~~l~~i~tlhlA 196 (498)
T KOG4237|consen 130 DLPKGAFGG----LSSLQRLLLNANHINCIRQDALRD----LPSLSLLSLYDNKI-----QSICKGTFQGLAAIKTLHLA 196 (498)
T ss_pred hhhhhHhhh----HHHHHHHhcChhhhcchhHHHHHH----hhhcchhcccchhh-----hhhccccccchhccchHhhh
Confidence 876655554 478888999888887764444444 48899999988877 55555 45557788888877
Q ss_pred CCCC-ChHHHHHHH-------HHhhcCCCCCEEEccCCCCChHHHHHHHHhhhcCccccceeeccCCCCChhHHHHHHHH
Q 007577 311 GNYG-GALGANALA-------KGLEGNKSLRELHLHGNSIGDEGIRALMSGLSSRKGKLAVLDIGNNSISAKGAFHVAEY 382 (597)
Q Consensus 311 ~n~i-~~~~~~~l~-------~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~ 382 (597)
.|.+ .+-....++ ..+....-..-..+.+.++.......+...+. .+..=-.+.|.+... .....
T Consensus 197 ~np~icdCnL~wla~~~a~~~ietsgarc~~p~rl~~~Ri~q~~a~kf~c~~e----sl~s~~~~~d~~d~~---cP~~c 269 (498)
T KOG4237|consen 197 QNPFICDCNLPWLADDLAMNPIETSGARCVSPYRLYYKRINQEDARKFLCSLE----SLPSRLSSEDFPDSI---CPAKC 269 (498)
T ss_pred cCccccccccchhhhHHhhchhhcccceecchHHHHHHHhcccchhhhhhhHH----hHHHhhccccCcCCc---ChHHH
Confidence 6652 111111111 11111111222222333332222222211111 011000111211111 12344
Q ss_pred HHcCCCCcEEEccCCCCCcHHHHHHHHHHhcCCCccEEEccCCCCChHHHHHHHHHhhcCCCcCEEECcCCCCCHHHHHH
Q 007577 383 IKNCKSLLWINLYMNDIGDEGAEKIADALKQNRTITTIDLGGNNIHSKGASAIARVLKDNSVITSLDLAYNPIGADGAKA 462 (597)
Q Consensus 383 l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~ 462 (597)
|+.+++|++|+|++|+|+...- .++.....+++|.|..|+|....-..|.. ...|+.|+|.+|+|+....-+
T Consensus 270 f~~L~~L~~lnlsnN~i~~i~~----~aFe~~a~l~eL~L~~N~l~~v~~~~f~~----ls~L~tL~L~~N~it~~~~~a 341 (498)
T KOG4237|consen 270 FKKLPNLRKLNLSNNKITRIED----GAFEGAAELQELYLTRNKLEFVSSGMFQG----LSGLKTLSLYDNQITTVAPGA 341 (498)
T ss_pred HhhcccceEeccCCCccchhhh----hhhcchhhhhhhhcCcchHHHHHHHhhhc----cccceeeeecCCeeEEEeccc
Confidence 6666666666666666665322 22333456666666666665543333322 366666666666665443322
Q ss_pred HHHHHhhCCCcCEEecCCCCCC-hhHHHHHHHHHhcC-----------CCccEEEccCCCCChHH---H-----------
Q 007577 463 LSEVLKFHGNINTLKLGWCQIG-ASGAEFVADMLRYN-----------NTISILDLRANGLRDEG---A----------- 516 (597)
Q Consensus 463 l~~~l~~~~~L~~L~L~~n~i~-~~~~~~l~~~l~~~-----------~~L~~L~l~~n~i~~~~---~----------- 516 (597)
+. ....|.+|++-.|.+. +-...++.+-+++. ..++.+++++..+++.. .
T Consensus 342 F~----~~~~l~~l~l~~Np~~CnC~l~wl~~Wlr~~~~~~~~~Cq~p~~~~~~~~~dv~~~~~~c~~~ee~~~~~s~~c 417 (498)
T KOG4237|consen 342 FQ----TLFSLSTLNLLSNPFNCNCRLAWLGEWLRKKSVVGNPRCQSPGFVRQIPISDVAFGDFRCGGPEELGCLTSSPC 417 (498)
T ss_pred cc----ccceeeeeehccCcccCccchHHHHHHHhhCCCCCCCCCCCCchhccccchhccccccccCCccccCCCCCCCC
Confidence 22 2245666666544321 11122333322211 13445555554333211 1
Q ss_pred ----HHHHHHHhhcC-----------ccccEEEccCCCCChHHHHHHHHHHHhCCCCceeEEEcccCccchhhHHHHHHH
Q 007577 517 ----KCLAQSFKVVN-----------EALTSIDLAFNEIRDDGAFAIAQALKANEDVAVTSLNLANNFLTKFGQSALTDA 581 (597)
Q Consensus 517 ----~~l~~~l~~~n-----------~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~N~i~~~~~~~l~~~ 581 (597)
.++....+.+| ..-.+|++.+|.++..... . ++ ++ .+|+++|+|+...-..|..+
T Consensus 418 P~~c~c~~tVvRcSnk~lk~lp~~iP~d~telyl~gn~~~~vp~~-~---~~-----~l-~~dls~n~i~~Lsn~tf~n~ 487 (498)
T KOG4237|consen 418 PPPCTCLDTVVRCSNKLLKLLPRGIPVDVTELYLDGNAITSVPDE-L---LR-----SL-LLDLSNNRISSLSNYTFSNM 487 (498)
T ss_pred CCCcchhhhhHhhcccchhhcCCCCCchhHHHhcccchhcccCHH-H---Hh-----hh-hcccccCceehhhcccccch
Confidence 01111111122 2345778888888754333 2 11 26 78999999888887777777
Q ss_pred HHHH
Q 007577 582 KDLV 585 (597)
Q Consensus 582 ~~~~ 585 (597)
..+.
T Consensus 488 tql~ 491 (498)
T KOG4237|consen 488 TQLS 491 (498)
T ss_pred hhhh
Confidence 6554
No 25
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.58 E-value=5.3e-15 Score=161.92 Aligned_cols=34 Identities=18% Similarity=0.187 Sum_probs=15.9
Q ss_pred CccEEEeccCCCCHHHHHHHHHHhhhCCCccEEEccCCCCC
Q 007577 191 TAEEVSFAANGITAAGIKAFDGVLQSNIALKTLNLSGNPIG 231 (597)
Q Consensus 191 ~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~ 231 (597)
+|+.|++++|+|+.. +..+ .++|++|++++|.++
T Consensus 200 ~L~~L~Ls~N~LtsL-----P~~l--~~nL~~L~Ls~N~Lt 233 (754)
T PRK15370 200 QITTLILDNNELKSL-----PENL--QGNIKTLYANSNQLT 233 (754)
T ss_pred CCcEEEecCCCCCcC-----Chhh--ccCCCEEECCCCccc
Confidence 455555555555422 1111 134555555555554
No 26
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.57 E-value=2.9e-15 Score=163.99 Aligned_cols=258 Identities=21% Similarity=0.241 Sum_probs=152.9
Q ss_pred CccEEEccCCCCChhHHHHHHHHHhcCCCcCEEEecCCCCChHHHHHHHHHHHcCCCccEEEeccCCCChhhHHHHHHHH
Q 007577 219 ALKTLNLSGNPIGDEGVKCLCDILVDNAGVERLQLSSVDLRDEGAKAIAELLKNNSILRVLELNNNMIDYSGFTSLAEAL 298 (597)
Q Consensus 219 ~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l 298 (597)
+...|+++++.++.. +..+ .+.|+.|++++|.++.. +..+. ++|++|++++|+++. ++..+
T Consensus 179 ~~~~L~L~~~~LtsL-----P~~I--p~~L~~L~Ls~N~LtsL-----P~~l~--~nL~~L~Ls~N~Lts-----LP~~l 239 (754)
T PRK15370 179 NKTELRLKILGLTTI-----PACI--PEQITTLILDNNELKSL-----PENLQ--GNIKTLYANSNQLTS-----IPATL 239 (754)
T ss_pred CceEEEeCCCCcCcC-----Cccc--ccCCcEEEecCCCCCcC-----Chhhc--cCCCEEECCCCcccc-----CChhh
Confidence 567788887777643 2211 25688888888887753 22222 468888888887742 23322
Q ss_pred hhCCCccEEEcCCCCCChHHHHHHHHHhhcCCCCCEEEccCCCCChHHHHHHHHhhhcCccccceeeccCCCCChhHHHH
Q 007577 299 LENSTIRSLHLNGNYGGALGANALAKGLEGNKSLRELHLHGNSIGDEGIRALMSGLSSRKGKLAVLDIGNNSISAKGAFH 378 (597)
Q Consensus 299 ~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~ 378 (597)
..+|+.|+|++|.+...+. .+. .+|+.|++++|+++. ++..+. .+|+.|++++|.++.
T Consensus 240 --~~~L~~L~Ls~N~L~~LP~-----~l~--s~L~~L~Ls~N~L~~-----LP~~l~---~sL~~L~Ls~N~Lt~----- 297 (754)
T PRK15370 240 --PDTIQEMELSINRITELPE-----RLP--SALQSLDLFHNKISC-----LPENLP---EELRYLSVYDNSIRT----- 297 (754)
T ss_pred --hccccEEECcCCccCcCCh-----hHh--CCCCEEECcCCccCc-----cccccC---CCCcEEECCCCcccc-----
Confidence 2468888888887765432 121 367888888887764 222221 368888888887765
Q ss_pred HHHHHHcCCCCcEEEccCCCCCcHHHHHHHHHHhcCCCccEEEccCCCCChHHHHHHHHHhhcCCCcCEEECcCCCCCHH
Q 007577 379 VAEYIKNCKSLLWINLYMNDIGDEGAEKIADALKQNRTITTIDLGGNNIHSKGASAIARVLKDNSVITSLDLAYNPIGAD 458 (597)
Q Consensus 379 l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~ 458 (597)
++..+. ++|++|++++|.++. ++..+ .++|++|++++|.++.. +..+ +++|+.|++++|+++..
T Consensus 298 LP~~lp--~sL~~L~Ls~N~Lt~-----LP~~l--~~sL~~L~Ls~N~Lt~L-----P~~l--~~sL~~L~Ls~N~L~~L 361 (754)
T PRK15370 298 LPAHLP--SGITHLNVQSNSLTA-----LPETL--PPGLKTLEAGENALTSL-----PASL--PPELQVLDVSKNQITVL 361 (754)
T ss_pred Ccccch--hhHHHHHhcCCcccc-----CCccc--cccceeccccCCccccC-----Chhh--cCcccEEECCCCCCCcC
Confidence 332222 357777888877764 22222 25678888888877652 2222 26788888888877532
Q ss_pred HHHHHHHHHhhCCCcCEEecCCCCCChhHHHHHHHHHhcCCCccEEEccCCCCChHHHHHHHHHHhhcCccccEEEccCC
Q 007577 459 GAKALSEVLKFHGNINTLKLGWCQIGASGAEFVADMLRYNNTISILDLRANGLRDEGAKCLAQSFKVVNEALTSIDLAFN 538 (597)
Q Consensus 459 ~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~n~i~~~~~~~l~~~l~~~n~~L~~L~Ls~n 538 (597)
+..+ .++|++|++++|+++..... +. ..|+.|++++|++... +..+..... ..+.+..|++.+|
T Consensus 362 -----P~~l--p~~L~~LdLs~N~Lt~LP~~-l~------~sL~~LdLs~N~L~~L-P~sl~~~~~-~~~~l~~L~L~~N 425 (754)
T PRK15370 362 -----PETL--PPTITTLDVSRNALTNLPEN-LP------AALQIMQASRNNLVRL-PESLPHFRG-EGPQPTRIIVEYN 425 (754)
T ss_pred -----Chhh--cCCcCEEECCCCcCCCCCHh-HH------HHHHHHhhccCCcccC-chhHHHHhh-cCCCccEEEeeCC
Confidence 1111 25788888888877654322 21 2477777888877642 222222211 1255777888888
Q ss_pred CCChHHHHHHH
Q 007577 539 EIRDDGAFAIA 549 (597)
Q Consensus 539 ~i~~~~~~~l~ 549 (597)
.++......+.
T Consensus 426 pls~~tl~~L~ 436 (754)
T PRK15370 426 PFSERTIQNMQ 436 (754)
T ss_pred CccHHHHHHHH
Confidence 77765554443
No 27
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.55 E-value=8.3e-15 Score=171.18 Aligned_cols=309 Identities=14% Similarity=0.126 Sum_probs=179.7
Q ss_pred CCCcEEEcCCCCCCHHHHHHHHHHhccCCCccEEEeccCCCCHHHHHHHHHHhhhCCCccEEEccCCC-CChhHHHHHHH
Q 007577 162 RAFSSVDMSGRNFGDEGLFFLAESLGYNQTAEEVSFAANGITAAGIKAFDGVLQSNIALKTLNLSGNP-IGDEGVKCLCD 240 (597)
Q Consensus 162 ~~L~~L~Ls~~~l~~~~~~~l~~~l~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~-l~~~~~~~l~~ 240 (597)
+.|+.|++.++.+.. ++..+ ...+|+.|++.+|.+.. +...+..+++|+.|+|+++. +... +
T Consensus 589 ~~Lr~L~~~~~~l~~-----lP~~f-~~~~L~~L~L~~s~l~~-----L~~~~~~l~~Lk~L~Ls~~~~l~~i-----p- 651 (1153)
T PLN03210 589 PKLRLLRWDKYPLRC-----MPSNF-RPENLVKLQMQGSKLEK-----LWDGVHSLTGLRNIDLRGSKNLKEI-----P- 651 (1153)
T ss_pred cccEEEEecCCCCCC-----CCCcC-CccCCcEEECcCccccc-----cccccccCCCCCEEECCCCCCcCcC-----C-
Confidence 458899998886654 23333 35789999999998753 33445677899999998854 3332 2
Q ss_pred HHhcCCCcCEEEecCCCCChHHHHHHHHHHHcCCCccEEEeccCCCChhhHHHHHHHHhhCCCccEEEcCCCCCChHHHH
Q 007577 241 ILVDNAGVERLQLSSVDLRDEGAKAIAELLKNNSILRVLELNNNMIDYSGFTSLAEALLENSTIRSLHLNGNYGGALGAN 320 (597)
Q Consensus 241 ~l~~~~~L~~L~Ls~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~ 320 (597)
.+..+++|+.|++++|.... .++..+.++++|+.|++++|..- ..++..+ .+++|+.|++++|....
T Consensus 652 ~ls~l~~Le~L~L~~c~~L~----~lp~si~~L~~L~~L~L~~c~~L----~~Lp~~i-~l~sL~~L~Lsgc~~L~---- 718 (1153)
T PLN03210 652 DLSMATNLETLKLSDCSSLV----ELPSSIQYLNKLEDLDMSRCENL----EILPTGI-NLKSLYRLNLSGCSRLK---- 718 (1153)
T ss_pred ccccCCcccEEEecCCCCcc----ccchhhhccCCCCEEeCCCCCCc----CccCCcC-CCCCCCEEeCCCCCCcc----
Confidence 23456899999999886433 25566677789999999987421 2333332 57889999999885321
Q ss_pred HHHHHhhcCCCCCEEEccCCCCChHHHHHHHHhhhcCccccceeeccCCCCChh--HHH-HHHHHHHcCCCCcEEEccCC
Q 007577 321 ALAKGLEGNKSLRELHLHGNSIGDEGIRALMSGLSSRKGKLAVLDIGNNSISAK--GAF-HVAEYIKNCKSLLWINLYMN 397 (597)
Q Consensus 321 ~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~--~~~-~l~~~l~~~~~L~~L~Ls~n 397 (597)
.++. ...+|+.|++++|.+.. ++..+ .+++|+.|++.++..... ... ..+......++|+.|+|++|
T Consensus 719 ~~p~---~~~nL~~L~L~~n~i~~-----lP~~~--~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n 788 (1153)
T PLN03210 719 SFPD---ISTNISWLDLDETAIEE-----FPSNL--RLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDI 788 (1153)
T ss_pred cccc---ccCCcCeeecCCCcccc-----ccccc--cccccccccccccchhhccccccccchhhhhccccchheeCCCC
Confidence 1111 23578888998887654 22111 234666666665431110 000 00111223456777777777
Q ss_pred CCCcHHHHHHHHHHhcCCCccEEEccCCC-CChHHHHHHHHHhhcCCCcCEEECcCCCCCHHHHHHHHHHHhhCCCcCEE
Q 007577 398 DIGDEGAEKIADALKQNRTITTIDLGGNN-IHSKGASAIARVLKDNSVITSLDLAYNPIGADGAKALSEVLKFHGNINTL 476 (597)
Q Consensus 398 ~l~~~~~~~l~~~l~~~~~L~~L~L~~n~-l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L 476 (597)
..... ++..+..+++|++|++++|. +.. ++..+ .+++|+.|+|++|..-. .+.. ..++|++|
T Consensus 789 ~~l~~----lP~si~~L~~L~~L~Ls~C~~L~~-----LP~~~-~L~sL~~L~Ls~c~~L~----~~p~---~~~nL~~L 851 (1153)
T PLN03210 789 PSLVE----LPSSIQNLHKLEHLEIENCINLET-----LPTGI-NLESLESLDLSGCSRLR----TFPD---ISTNISDL 851 (1153)
T ss_pred CCccc----cChhhhCCCCCCEEECCCCCCcCe-----eCCCC-CccccCEEECCCCCccc----cccc---cccccCEe
Confidence 43332 45556667777777777763 332 22211 34677777777763211 1111 12467777
Q ss_pred ecCCCCCChhHHHHHHHHHhcCCCccEEEccCC-CCChHHHHHHHHHHhhcCccccEEEccCC
Q 007577 477 KLGWCQIGASGAEFVADMLRYNNTISILDLRAN-GLRDEGAKCLAQSFKVVNEALTSIDLAFN 538 (597)
Q Consensus 477 ~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~n-~i~~~~~~~l~~~l~~~n~~L~~L~Ls~n 538 (597)
++++|.++.. ...+..+++|+.|++++| .+..... .+... +.|+.+++++|
T Consensus 852 ~Ls~n~i~~i-----P~si~~l~~L~~L~L~~C~~L~~l~~-~~~~L-----~~L~~L~l~~C 903 (1153)
T PLN03210 852 NLSRTGIEEV-----PWWIEKFSNLSFLDMNGCNNLQRVSL-NISKL-----KHLETVDFSDC 903 (1153)
T ss_pred ECCCCCCccC-----hHHHhcCCCCCEEECCCCCCcCccCc-ccccc-----cCCCeeecCCC
Confidence 7777776543 223445577777777775 4443211 12221 55677777776
No 28
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=99.50 E-value=6.9e-14 Score=130.00 Aligned_cols=194 Identities=15% Similarity=0.245 Sum_probs=125.9
Q ss_pred ccceeeccCCCCChhHHHHHHHHHHcCCCCcEEEccCCCCCcHHHHHHHHHHhcCCCccEEEccCC-CCChHHHHHHHHH
Q 007577 360 KLAVLDIGNNSISAKGAFHVAEYIKNCKSLLWINLYMNDIGDEGAEKIADALKQNRTITTIDLGGN-NIHSKGASAIARV 438 (597)
Q Consensus 360 ~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n-~l~~~~~~~l~~~ 438 (597)
.|+.|||+...|+.. .+...++.|.+|+.|.|.++.++|. ++..+.++.+|+.|+|++| .++..+++.+
T Consensus 186 Rlq~lDLS~s~it~s---tl~~iLs~C~kLk~lSlEg~~LdD~----I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll--- 255 (419)
T KOG2120|consen 186 RLQHLDLSNSVITVS---TLHGILSQCSKLKNLSLEGLRLDDP----IVNTIAKNSNLVRLNLSMCSGFTENALQLL--- 255 (419)
T ss_pred hhHHhhcchhheeHH---HHHHHHHHHHhhhhccccccccCcH----HHHHHhccccceeeccccccccchhHHHHH---
Confidence 577777777777665 3444567777888888888888776 5666667788888888876 5776665555
Q ss_pred hhcCCCcCEEECcCCCCCHHHHHHHHHHHhhCCCcCEEecCCCC--CChhHHHHHHHHHhcCCCccEEEccCC-CCChHH
Q 007577 439 LKDNSVITSLDLAYNPIGADGAKALSEVLKFHGNINTLKLGWCQ--IGASGAEFVADMLRYNNTISILDLRAN-GLRDEG 515 (597)
Q Consensus 439 l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~--i~~~~~~~l~~~l~~~~~L~~L~l~~n-~i~~~~ 515 (597)
+.+|+.|.+|+|+.|.+..+.+..+...+. ++|+.|+++|+. +... .+..+...|++|.+||+++| .+++.-
T Consensus 256 ~~scs~L~~LNlsWc~l~~~~Vtv~V~his--e~l~~LNlsG~rrnl~~s---h~~tL~~rcp~l~~LDLSD~v~l~~~~ 330 (419)
T KOG2120|consen 256 LSSCSRLDELNLSWCFLFTEKVTVAVAHIS--ETLTQLNLSGYRRNLQKS---HLSTLVRRCPNLVHLDLSDSVMLKNDC 330 (419)
T ss_pred HHhhhhHhhcCchHhhccchhhhHHHhhhc--hhhhhhhhhhhHhhhhhh---HHHHHHHhCCceeeeccccccccCchH
Confidence 455788888888888776666665554444 678888888874 3222 45555667888888888877 666654
Q ss_pred HHHHHHHHhhcCccccEEEccCC-CCChHHHHHHHHHHHhCCCCceeEEEcccCccchhhHHHHHH
Q 007577 516 AKCLAQSFKVVNEALTSIDLAFN-EIRDDGAFAIAQALKANEDVAVTSLNLANNFLTKFGQSALTD 580 (597)
Q Consensus 516 ~~~l~~~l~~~n~~L~~L~Ls~n-~i~~~~~~~l~~~l~~~~~~~L~~L~L~~N~i~~~~~~~l~~ 580 (597)
...+.+. +.|++|.++.| .|.......+. ..+++.+||+.|+ ..+-..+.+..
T Consensus 331 ~~~~~kf-----~~L~~lSlsRCY~i~p~~~~~l~------s~psl~yLdv~g~-vsdt~mel~~e 384 (419)
T KOG2120|consen 331 FQEFFKF-----NYLQHLSLSRCYDIIPETLLELN------SKPSLVYLDVFGC-VSDTTMELLKE 384 (419)
T ss_pred HHHHHhc-----chheeeehhhhcCCChHHeeeec------cCcceEEEEeccc-cCchHHHHHHH
Confidence 4555444 56888888888 44433222222 2245888888776 33333344433
No 29
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.49 E-value=1.1e-15 Score=147.08 Aligned_cols=279 Identities=22% Similarity=0.205 Sum_probs=143.1
Q ss_pred CCcCEEEecCCCCChHHHHHHHHHHHcCCCccEEEeccCCCChhhHHHHHHHHhhCCCccEEEcCC-CCCChHHHHHHHH
Q 007577 246 AGVERLQLSSVDLRDEGAKAIAELLKNNSILRVLELNNNMIDYSGFTSLAEALLENSTIRSLHLNG-NYGGALGANALAK 324 (597)
Q Consensus 246 ~~L~~L~Ls~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~L~~-n~i~~~~~~~l~~ 324 (597)
+....++|..|+|+.....+|..+ ++|+.|||++|.|+..+ +++|..++.|.+|-+.+ |+|++... .
T Consensus 67 ~~tveirLdqN~I~~iP~~aF~~l----~~LRrLdLS~N~Is~I~----p~AF~GL~~l~~Lvlyg~NkI~~l~k----~ 134 (498)
T KOG4237|consen 67 PETVEIRLDQNQISSIPPGAFKTL----HRLRRLDLSKNNISFIA----PDAFKGLASLLSLVLYGNNKITDLPK----G 134 (498)
T ss_pred CcceEEEeccCCcccCChhhccch----hhhceecccccchhhcC----hHhhhhhHhhhHHHhhcCCchhhhhh----h
Confidence 556777888888877655444444 77888888888775332 44555566666665555 67776655 3
Q ss_pred HhhcCCCCCEEEccCCCCChHHHHHHHHhhhcCccccceeeccCCCCChhHHHHHHH-HHHcCCCCcEEEccCCC-CCcH
Q 007577 325 GLEGNKSLRELHLHGNSIGDEGIRALMSGLSSRKGKLAVLDIGNNSISAKGAFHVAE-YIKNCKSLLWINLYMND-IGDE 402 (597)
Q Consensus 325 ~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~-~l~~~~~L~~L~Ls~n~-l~~~ 402 (597)
.|.++..++.|.+.-|++.-.-.+.+ ..++++..|.+-+|.+.. ++. .+..+..++.+.+..|. +.+-
T Consensus 135 ~F~gL~slqrLllNan~i~Cir~~al-----~dL~~l~lLslyDn~~q~-----i~~~tf~~l~~i~tlhlA~np~icdC 204 (498)
T KOG4237|consen 135 AFGGLSSLQRLLLNANHINCIRQDAL-----RDLPSLSLLSLYDNKIQS-----ICKGTFQGLAAIKTLHLAQNPFICDC 204 (498)
T ss_pred HhhhHHHHHHHhcChhhhcchhHHHH-----HHhhhcchhcccchhhhh-----hccccccchhccchHhhhcCcccccc
Confidence 34566667777776666543222222 233356666666665544 333 45556667777776664 3332
Q ss_pred HHHHHHHHHhc-------CCCccEEEccCCCCChHHHHHHHHHhhcCCCcCEE--EC-cCCCCCHHHHHHHHHHHhhCCC
Q 007577 403 GAEKIADALKQ-------NRTITTIDLGGNNIHSKGASAIARVLKDNSVITSL--DL-AYNPIGADGAKALSEVLKFHGN 472 (597)
Q Consensus 403 ~~~~l~~~l~~-------~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L--~L-s~n~i~~~~~~~l~~~l~~~~~ 472 (597)
.+..+.+.+.. ........+.+.++..+....+... ++.+ .+ +.+...... -...++.+++
T Consensus 205 nL~wla~~~a~~~ietsgarc~~p~rl~~~Ri~q~~a~kf~c~------~esl~s~~~~~d~~d~~c---P~~cf~~L~~ 275 (498)
T KOG4237|consen 205 NLPWLADDLAMNPIETSGARCVSPYRLYYKRINQEDARKFLCS------LESLPSRLSSEDFPDSIC---PAKCFKKLPN 275 (498)
T ss_pred ccchhhhHHhhchhhcccceecchHHHHHHHhcccchhhhhhh------HHhHHHhhccccCcCCcC---hHHHHhhccc
Confidence 22222222111 1111222222333333222222211 1111 11 111111111 1122445566
Q ss_pred cCEEecCCCCCChhHHHHHHHHHhcCCCccEEEccCCCCChHHHHHHHHHHhhcCccccEEEccCCCCChHHHHHHHHHH
Q 007577 473 INTLKLGWCQIGASGAEFVADMLRYNNTISILDLRANGLRDEGAKCLAQSFKVVNEALTSIDLAFNEIRDDGAFAIAQAL 552 (597)
Q Consensus 473 L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~n~i~~~~~~~l~~~l~~~n~~L~~L~Ls~n~i~~~~~~~l~~~l 552 (597)
|++|++++|+|+.....+|..+ ..+++|.+..|+|....-..|... ..|+.|+|.+|+|+...+.+|....
T Consensus 276 L~~lnlsnN~i~~i~~~aFe~~----a~l~eL~L~~N~l~~v~~~~f~~l-----s~L~tL~L~~N~it~~~~~aF~~~~ 346 (498)
T KOG4237|consen 276 LRKLNLSNNKITRIEDGAFEGA----AELQELYLTRNKLEFVSSGMFQGL-----SGLKTLSLYDNQITTVAPGAFQTLF 346 (498)
T ss_pred ceEeccCCCccchhhhhhhcch----hhhhhhhcCcchHHHHHHHhhhcc-----ccceeeeecCCeeEEEecccccccc
Confidence 6666666666666655555544 556666666666554433333322 4566666666666666665555442
Q ss_pred HhCCCCceeEEEcccCcc
Q 007577 553 KANEDVAVTSLNLANNFL 570 (597)
Q Consensus 553 ~~~~~~~L~~L~L~~N~i 570 (597)
. |.+|+|-.|.+
T Consensus 347 ~------l~~l~l~~Np~ 358 (498)
T KOG4237|consen 347 S------LSTLNLLSNPF 358 (498)
T ss_pred e------eeeeehccCcc
Confidence 2 66666666554
No 30
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=99.39 E-value=1.5e-12 Score=121.16 Aligned_cols=184 Identities=16% Similarity=0.157 Sum_probs=81.1
Q ss_pred CCEEEccCCCCChHHHHHHHHhhhcCccccceeeccCCCCChhHHHHHHHHHHcCCCCcEEEccCC-CCCcHHHHHHHHH
Q 007577 332 LRELHLHGNSIGDEGIRALMSGLSSRKGKLAVLDIGNNSISAKGAFHVAEYIKNCKSLLWINLYMN-DIGDEGAEKIADA 410 (597)
Q Consensus 332 L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n-~l~~~~~~~l~~~ 410 (597)
|++|||+...|+...+..+.. ++.+|+.|.+.++.+.+ .+...+.+..+|+.|+|+.+ .++..++..+
T Consensus 187 lq~lDLS~s~it~stl~~iLs----~C~kLk~lSlEg~~LdD----~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll--- 255 (419)
T KOG2120|consen 187 LQHLDLSNSVITVSTLHGILS----QCSKLKNLSLEGLRLDD----PIVNTIAKNSNLVRLNLSMCSGFTENALQLL--- 255 (419)
T ss_pred hHHhhcchhheeHHHHHHHHH----HHHhhhhccccccccCc----HHHHHHhccccceeeccccccccchhHHHHH---
Confidence 455555555554443333332 22345555555555555 24444445555555555554 4444433332
Q ss_pred HhcCCCccEEEccCCCCChHHHHHHHHHhhcCCCcCEEECcCCCCCHHHHHHHHHHHhhCCCcCEEecCCCC-CChhHHH
Q 007577 411 LKQNRTITTIDLGGNNIHSKGASAIARVLKDNSVITSLDLAYNPIGADGAKALSEVLKFHGNINTLKLGWCQ-IGASGAE 489 (597)
Q Consensus 411 l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~-i~~~~~~ 489 (597)
+.+++.|..|+|+.|.++.+.+..+...++ ++|+.|+|+++.= ..+...+.-..+.|++|.+|+|++|. +++....
T Consensus 256 ~~scs~L~~LNlsWc~l~~~~Vtv~V~his--e~l~~LNlsG~rr-nl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~ 332 (419)
T KOG2120|consen 256 LSSCSRLDELNLSWCFLFTEKVTVAVAHIS--ETLTQLNLSGYRR-NLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQ 332 (419)
T ss_pred HHhhhhHhhcCchHhhccchhhhHHHhhhc--hhhhhhhhhhhHh-hhhhhHHHHHHHhCCceeeeccccccccCchHHH
Confidence 223455555555555554444433333222 4455555555410 01111233333445555555555543 4332222
Q ss_pred HHHHHHhcCCCccEEEccCC-CCChHHHHHHHHHHhhcCccccEEEccCC
Q 007577 490 FVADMLRYNNTISILDLRAN-GLRDEGAKCLAQSFKVVNEALTSIDLAFN 538 (597)
Q Consensus 490 ~l~~~l~~~~~L~~L~l~~n-~i~~~~~~~l~~~l~~~n~~L~~L~Ls~n 538 (597)
.+. +.+.|++|.++.| .|.......+... ++|.+||+.++
T Consensus 333 ~~~----kf~~L~~lSlsRCY~i~p~~~~~l~s~-----psl~yLdv~g~ 373 (419)
T KOG2120|consen 333 EFF----KFNYLQHLSLSRCYDIIPETLLELNSK-----PSLVYLDVFGC 373 (419)
T ss_pred HHH----hcchheeeehhhhcCCChHHeeeeccC-----cceEEEEeccc
Confidence 222 2355555555555 3333333333332 55555555554
No 31
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=99.38 E-value=2.1e-14 Score=140.17 Aligned_cols=230 Identities=19% Similarity=0.148 Sum_probs=97.4
Q ss_pred HHHHHHHHHhccCCCccEEEeccCCCCHHHHHHHHHHhhhCCCccEEEccCCCCChhHHHHHHHHHhcCCCcCEEEecCC
Q 007577 177 EGLFFLAESLGYNQTAEEVSFAANGITAAGIKAFDGVLQSNIALKTLNLSGNPIGDEGVKCLCDILVDNAGVERLQLSSV 256 (597)
Q Consensus 177 ~~~~~l~~~l~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~~ 256 (597)
.|+..++.-=+++++|+++.|.++.+...+.. +....|++++.||||+|-+.. +..++.....+++|+.|+|+.|
T Consensus 108 iGfDki~akQsn~kkL~~IsLdn~~V~~~~~~---~~~k~~~~v~~LdLS~NL~~n--w~~v~~i~eqLp~Le~LNls~N 182 (505)
T KOG3207|consen 108 IGFDKIAAKQSNLKKLREISLDNYRVEDAGIE---EYSKILPNVRDLDLSRNLFHN--WFPVLKIAEQLPSLENLNLSSN 182 (505)
T ss_pred ecHHHHHHHhhhHHhhhheeecCccccccchh---hhhhhCCcceeecchhhhHHh--HHHHHHHHHhcccchhcccccc
Confidence 33333443333345555555555544433322 233445555555555554432 2334444444555555555555
Q ss_pred CCChHHHHHHHHHHHcCCCccEEEeccCCCChhhHHHHHHHHhhCCCccEEEcCCCC-CChHHHHHHHHHhhcCCCCCEE
Q 007577 257 DLRDEGAKAIAELLKNNSILRVLELNNNMIDYSGFTSLAEALLENSTIRSLHLNGNY-GGALGANALAKGLEGNKSLREL 335 (597)
Q Consensus 257 ~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~-i~~~~~~~l~~~l~~~~~L~~L 335 (597)
++....-..... ..++|+.|.|+.|.++...+..+. ..+|+|+.|+|..|. +... .. .......|++|
T Consensus 183 rl~~~~~s~~~~---~l~~lK~L~l~~CGls~k~V~~~~---~~fPsl~~L~L~~N~~~~~~---~~--~~~i~~~L~~L 251 (505)
T KOG3207|consen 183 RLSNFISSNTTL---LLSHLKQLVLNSCGLSWKDVQWIL---LTFPSLEVLYLEANEIILIK---AT--STKILQTLQEL 251 (505)
T ss_pred cccCCccccchh---hhhhhheEEeccCCCCHHHHHHHH---HhCCcHHHhhhhccccccee---cc--hhhhhhHHhhc
Confidence 432211001111 124455555555555543333322 234555555555552 1110 00 01123355555
Q ss_pred EccCCCCChHHHHHHHHhhhcCccccceeeccCCCCChhHHHH--HHHHHHcCCCCcEEEccCCCCCcHHHHHHHHHHhc
Q 007577 336 HLHGNSIGDEGIRALMSGLSSRKGKLAVLDIGNNSISAKGAFH--VAEYIKNCKSLLWINLYMNDIGDEGAEKIADALKQ 413 (597)
Q Consensus 336 ~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~--l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~ 413 (597)
+|++|++-+...-... ..++.|..|+++.|++++..... ..+-...+++|++|++..|+|.+- . ....+..
T Consensus 252 dLs~N~li~~~~~~~~----~~l~~L~~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w--~-sl~~l~~ 324 (505)
T KOG3207|consen 252 DLSNNNLIDFDQGYKV----GTLPGLNQLNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIRDW--R-SLNHLRT 324 (505)
T ss_pred cccCCccccccccccc----ccccchhhhhccccCcchhcCCCccchhhhcccccceeeecccCccccc--c-ccchhhc
Confidence 5555554332110010 23345555555555554421000 001123355666666666665442 0 1112333
Q ss_pred CCCccEEEccCCCCCh
Q 007577 414 NRTITTIDLGGNNIHS 429 (597)
Q Consensus 414 ~~~L~~L~L~~n~l~~ 429 (597)
+++|++|.+..|.++.
T Consensus 325 l~nlk~l~~~~n~ln~ 340 (505)
T KOG3207|consen 325 LENLKHLRITLNYLNK 340 (505)
T ss_pred cchhhhhhcccccccc
Confidence 4555666655555543
No 32
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=99.32 E-value=1.2e-13 Score=134.95 Aligned_cols=234 Identities=17% Similarity=0.127 Sum_probs=166.2
Q ss_pred hHHHHHHHHHHHHhcCCCcEEEcCCCCCCHHHHHHHHHHhccCCCccEEEeccCCCCHHHHHHHHHHhhhCCCccEEEcc
Q 007577 147 FRESKQTLNEFAKELRAFSSVDMSGRNFGDEGLFFLAESLGYNQTAEEVSFAANGITAAGIKAFDGVLQSNIALKTLNLS 226 (597)
Q Consensus 147 ~~~~~~~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~l~~~l~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls 226 (597)
+....+.+.+--+++..|+++.|+++.+.+.+.. .....|++++.|||++|-+.. +..+.+....+|+|+.|+|+
T Consensus 106 E~iGfDki~akQsn~kkL~~IsLdn~~V~~~~~~---~~~k~~~~v~~LdLS~NL~~n--w~~v~~i~eqLp~Le~LNls 180 (505)
T KOG3207|consen 106 EFIGFDKIAAKQSNLKKLREISLDNYRVEDAGIE---EYSKILPNVRDLDLSRNLFHN--WFPVLKIAEQLPSLENLNLS 180 (505)
T ss_pred EEecHHHHHHHhhhHHhhhheeecCccccccchh---hhhhhCCcceeecchhhhHHh--HHHHHHHHHhcccchhcccc
Confidence 3444555555566788899999999988776543 345568999999999997764 66777888899999999999
Q ss_pred CCCCChhHHHHHHHHHhcCCCcCEEEecCCCCChHHHHHHHHHHHcCCCccEEEeccCC-CChhhHHHHHHHHhhCCCcc
Q 007577 227 GNPIGDEGVKCLCDILVDNAGVERLQLSSVDLRDEGAKAIAELLKNNSILRVLELNNNM-IDYSGFTSLAEALLENSTIR 305 (597)
Q Consensus 227 ~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~-i~~~~~~~l~~~l~~~~~L~ 305 (597)
.|.+..-.-..... ..++|+.|.|+.|+++.. .+...+..+|+|+.|++..|. +.. .... ..-+..|+
T Consensus 181 ~Nrl~~~~~s~~~~---~l~~lK~L~l~~CGls~k---~V~~~~~~fPsl~~L~L~~N~~~~~---~~~~--~~i~~~L~ 249 (505)
T KOG3207|consen 181 SNRLSNFISSNTTL---LLSHLKQLVLNSCGLSWK---DVQWILLTFPSLEVLYLEANEIILI---KATS--TKILQTLQ 249 (505)
T ss_pred cccccCCccccchh---hhhhhheEEeccCCCCHH---HHHHHHHhCCcHHHhhhhcccccce---ecch--hhhhhHHh
Confidence 99875321111111 248899999999999854 566666678999999999994 321 1111 12357899
Q ss_pred EEEcCCCCCChHHHHHHHHHhhcCCCCCEEEccCCCCChHHHHHHHH-hhhcCccccceeeccCCCCChhHHHHHHHHHH
Q 007577 306 SLHLNGNYGGALGANALAKGLEGNKSLRELHLHGNSIGDEGIRALMS-GLSSRKGKLAVLDIGNNSISAKGAFHVAEYIK 384 (597)
Q Consensus 306 ~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~-~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~ 384 (597)
+|+|++|.+-+.+.. .....++.|..|+++.|++.+........ ......++|+.|++..|++.+- .....+.
T Consensus 250 ~LdLs~N~li~~~~~---~~~~~l~~L~~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w---~sl~~l~ 323 (505)
T KOG3207|consen 250 ELDLSNNNLIDFDQG---YKVGTLPGLNQLNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIRDW---RSLNHLR 323 (505)
T ss_pred hccccCCcccccccc---cccccccchhhhhccccCcchhcCCCccchhhhcccccceeeecccCccccc---cccchhh
Confidence 999999987654422 33567899999999999887643222100 0113456999999999998762 1224466
Q ss_pred cCCCCcEEEccCCCCCcH
Q 007577 385 NCKSLLWINLYMNDIGDE 402 (597)
Q Consensus 385 ~~~~L~~L~Ls~n~l~~~ 402 (597)
.+++|++|.+..|.++.+
T Consensus 324 ~l~nlk~l~~~~n~ln~e 341 (505)
T KOG3207|consen 324 TLENLKHLRITLNYLNKE 341 (505)
T ss_pred ccchhhhhhccccccccc
Confidence 778899999888877654
No 33
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.22 E-value=1.1e-13 Score=118.40 Aligned_cols=198 Identities=17% Similarity=0.207 Sum_probs=136.4
Q ss_pred ccceeeccCCCCChhHHHHHHHHHHcCCCCcEEEccCCCCCcHHHHHHHHHHhcCCCccEEEccCCCCChHHHHHHHHHh
Q 007577 360 KLAVLDIGNNSISAKGAFHVAEYIKNCKSLLWINLYMNDIGDEGAEKIADALKQNRTITTIDLGGNNIHSKGASAIARVL 439 (597)
Q Consensus 360 ~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l 439 (597)
.+..|.|++|+++. ++..+..+.+|+.|++++|+|.+ ++..+..++.|++|+++-|++.. +++.+
T Consensus 34 ~ITrLtLSHNKl~~-----vppnia~l~nlevln~~nnqie~-----lp~~issl~klr~lnvgmnrl~~-----lprgf 98 (264)
T KOG0617|consen 34 NITRLTLSHNKLTV-----VPPNIAELKNLEVLNLSNNQIEE-----LPTSISSLPKLRILNVGMNRLNI-----LPRGF 98 (264)
T ss_pred hhhhhhcccCceee-----cCCcHHHhhhhhhhhcccchhhh-----cChhhhhchhhhheecchhhhhc-----Ccccc
Confidence 56777788888776 66777778888888888888765 66777778888888888776544 56667
Q ss_pred hcCCCcCEEECcCCCCCHHHHHHHHHHHhhCCCcCEEecCCCCCChhHHHHHHHHHhcCCCccEEEccCCCCChHHHHHH
Q 007577 440 KDNSVITSLDLAYNPIGADGAKALSEVLKFHGNINTLKLGWCQIGASGAEFVADMLRYNNTISILDLRANGLRDEGAKCL 519 (597)
Q Consensus 440 ~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~n~i~~~~~~~l 519 (597)
+.+|.|+.|||.+|.+.... ++.-+-..+.|+.|.+++|.+.- +..-+.+.++|+.|.+++|.+-.. +..+
T Consensus 99 gs~p~levldltynnl~e~~---lpgnff~m~tlralyl~dndfe~-----lp~dvg~lt~lqil~lrdndll~l-pkei 169 (264)
T KOG0617|consen 99 GSFPALEVLDLTYNNLNENS---LPGNFFYMTTLRALYLGDNDFEI-----LPPDVGKLTNLQILSLRDNDLLSL-PKEI 169 (264)
T ss_pred CCCchhhhhhcccccccccc---CCcchhHHHHHHHHHhcCCCccc-----CChhhhhhcceeEEeeccCchhhC-cHHH
Confidence 77788888888888776532 22222333578888888887633 333445568999999999866543 4456
Q ss_pred HHHHhhcCccccEEEccCCCCChHHHHHHHHHHHhCCCCceeEEEcccCccchhhHHHHHHHHHHHhhhhh
Q 007577 520 AQSFKVVNEALTSIDLAFNEIRDDGAFAIAQALKANEDVAVTSLNLANNFLTKFGQSALTDAKDLVYEMSE 590 (597)
Q Consensus 520 ~~~l~~~n~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~N~i~~~~~~~l~~~~~~~~~l~~ 590 (597)
... ..|++|.+++|+++. .+..+++.-.- .+-+.+.+.+|.......+.|.-+.++++++..
T Consensus 170 g~l-----t~lrelhiqgnrl~v-lppel~~l~l~---~~k~v~r~E~NPwv~pIaeQf~lG~shV~~yir 231 (264)
T KOG0617|consen 170 GDL-----TRLRELHIQGNRLTV-LPPELANLDLV---GNKQVMRMEENPWVNPIAEQFLLGISHVIDYIR 231 (264)
T ss_pred HHH-----HHHHHHhcccceeee-cChhhhhhhhh---hhHHHHhhhhCCCCChHHHHHHhhHHHHHHHHh
Confidence 665 559999999999884 34444433110 013455667888877777777777777777654
No 34
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.12 E-value=7.1e-13 Score=113.54 Aligned_cols=155 Identities=21% Similarity=0.277 Sum_probs=93.1
Q ss_pred CCcCEEEecCCCCChHHHHHHHHHHHcCCCccEEEeccCCCChhhHHHHHHHHhhCCCccEEEcCCCCCChHHHHHHHHH
Q 007577 246 AGVERLQLSSVDLRDEGAKAIAELLKNNSILRVLELNNNMIDYSGFTSLAEALLENSTIRSLHLNGNYGGALGANALAKG 325 (597)
Q Consensus 246 ~~L~~L~Ls~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~ 325 (597)
.+++.|.|++|+++.. +..+..+.+|+.|++++|+| +.++..+..+++|++|+++-|.+. .++.+
T Consensus 33 s~ITrLtLSHNKl~~v-----ppnia~l~nlevln~~nnqi-----e~lp~~issl~klr~lnvgmnrl~-----~lprg 97 (264)
T KOG0617|consen 33 SNITRLTLSHNKLTVV-----PPNIAELKNLEVLNLSNNQI-----EELPTSISSLPKLRILNVGMNRLN-----ILPRG 97 (264)
T ss_pred hhhhhhhcccCceeec-----CCcHHHhhhhhhhhcccchh-----hhcChhhhhchhhhheecchhhhh-----cCccc
Confidence 4444455555554431 11122225555555555555 344555555566666666555432 22345
Q ss_pred hhcCCCCCEEEccCCCCChHHHHHHHHhhhcCccccceeeccCCCCChhHHHHHHHHHHcCCCCcEEEccCCCCCcHHHH
Q 007577 326 LEGNKSLRELHLHGNSIGDEGIRALMSGLSSRKGKLAVLDIGNNSISAKGAFHVAEYIKNCKSLLWINLYMNDIGDEGAE 405 (597)
Q Consensus 326 l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~ 405 (597)
|+.+|.|+.||+++|++.+..++.-+-. +..|+.|+|++|.+.- ++.-++++++|+.|.+..|++-.
T Consensus 98 fgs~p~levldltynnl~e~~lpgnff~----m~tlralyl~dndfe~-----lp~dvg~lt~lqil~lrdndll~---- 164 (264)
T KOG0617|consen 98 FGSFPALEVLDLTYNNLNENSLPGNFFY----MTTLRALYLGDNDFEI-----LPPDVGKLTNLQILSLRDNDLLS---- 164 (264)
T ss_pred cCCCchhhhhhccccccccccCCcchhH----HHHHHHHHhcCCCccc-----CChhhhhhcceeEEeeccCchhh----
Confidence 6666777777777776655433222211 2257778888887665 67777888888888888886644
Q ss_pred HHHHHHhcCCCccEEEccCCCCCh
Q 007577 406 KIADALKQNRTITTIDLGGNNIHS 429 (597)
Q Consensus 406 ~l~~~l~~~~~L~~L~L~~n~l~~ 429 (597)
++..++.+..|++|.+.+|+++-
T Consensus 165 -lpkeig~lt~lrelhiqgnrl~v 187 (264)
T KOG0617|consen 165 -LPKEIGDLTRLRELHIQGNRLTV 187 (264)
T ss_pred -CcHHHHHHHHHHHHhcccceeee
Confidence 66667777888888888888765
No 35
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.98 E-value=1.6e-10 Score=103.68 Aligned_cols=83 Identities=28% Similarity=0.362 Sum_probs=22.4
Q ss_pred ccceeeccCCCCChhHHHHHHHHHHcCCCCcEEEccCCCCCcHHHHHHHHHH-hcCCCccEEEccCCCCChHHHHHHHHH
Q 007577 360 KLAVLDIGNNSISAKGAFHVAEYIKNCKSLLWINLYMNDIGDEGAEKIADAL-KQNRTITTIDLGGNNIHSKGASAIARV 438 (597)
Q Consensus 360 ~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l-~~~~~L~~L~L~~n~l~~~~~~~l~~~ 438 (597)
+|+.|++++|.|+. + +.+..+++|++|++++|.|++. ...+ ..+++|++|++++|+|.+..- + ..
T Consensus 43 ~L~~L~Ls~N~I~~-----l-~~l~~L~~L~~L~L~~N~I~~i-----~~~l~~~lp~L~~L~L~~N~I~~l~~--l-~~ 108 (175)
T PF14580_consen 43 KLEVLDLSNNQITK-----L-EGLPGLPRLKTLDLSNNRISSI-----SEGLDKNLPNLQELYLSNNKISDLNE--L-EP 108 (175)
T ss_dssp T--EEE-TTS--S--------TT----TT--EEE--SS---S------CHHHHHH-TT--EEE-TTS---SCCC--C-GG
T ss_pred CCCEEECCCCCCcc-----c-cCccChhhhhhcccCCCCCCcc-----ccchHHhCCcCCEEECcCCcCCChHH--h-HH
Confidence 45555555555554 1 2234455555555555555442 1111 123555555555555443211 1 11
Q ss_pred hhcCCCcCEEECcCCCCC
Q 007577 439 LKDNSVITSLDLAYNPIG 456 (597)
Q Consensus 439 l~~~~~L~~L~Ls~n~i~ 456 (597)
+..+++|+.|+|.+|++.
T Consensus 109 L~~l~~L~~L~L~~NPv~ 126 (175)
T PF14580_consen 109 LSSLPKLRVLSLEGNPVC 126 (175)
T ss_dssp GGG-TT--EEE-TT-GGG
T ss_pred HHcCCCcceeeccCCccc
Confidence 333455555555555544
No 36
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.92 E-value=2.4e-10 Score=106.73 Aligned_cols=157 Identities=22% Similarity=0.202 Sum_probs=101.0
Q ss_pred cCCCCcEEEccCCCCCcHHHHHHHHHHhcCCCccEEEccCCCCChHHHHHHHHHhhcCCCcCEEECcCCCCCHHHHHHHH
Q 007577 385 NCKSLLWINLYMNDIGDEGAEKIADALKQNRTITTIDLGGNNIHSKGASAIARVLKDNSVITSLDLAYNPIGADGAKALS 464 (597)
Q Consensus 385 ~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~ 464 (597)
..+.|++|||++|.|+. +-..++-.|.++.|++++|.|...+- ++. +++|+.|||++|.++.. .
T Consensus 282 TWq~LtelDLS~N~I~~-----iDESvKL~Pkir~L~lS~N~i~~v~n--La~----L~~L~~LDLS~N~Ls~~-----~ 345 (490)
T KOG1259|consen 282 TWQELTELDLSGNLITQ-----IDESVKLAPKLRRLILSQNRIRTVQN--LAE----LPQLQLLDLSGNLLAEC-----V 345 (490)
T ss_pred hHhhhhhccccccchhh-----hhhhhhhccceeEEeccccceeeehh--hhh----cccceEeecccchhHhh-----h
Confidence 34567888888887764 33445556788888888888876432 333 48888888888876542 2
Q ss_pred HHHhhCCCcCEEecCCCCCChhHHHHHHHHHhcCCCccEEEccCCCCChHH-HHHHHHHHhhcCccccEEEccCCCCC--
Q 007577 465 EVLKFHGNINTLKLGWCQIGASGAEFVADMLRYNNTISILDLRANGLRDEG-AKCLAQSFKVVNEALTSIDLAFNEIR-- 541 (597)
Q Consensus 465 ~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~n~i~~~~-~~~l~~~l~~~n~~L~~L~Ls~n~i~-- 541 (597)
..-..+.++++|.|++|.|.+. .++.+..+|..||+++|+|.... +..++.. |.|+.|.|.+|.+.
T Consensus 346 Gwh~KLGNIKtL~La~N~iE~L------SGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~L-----PCLE~l~L~~NPl~~~ 414 (490)
T KOG1259|consen 346 GWHLKLGNIKTLKLAQNKIETL------SGLRKLYSLVNLDLSSNQIEELDEVNHIGNL-----PCLETLRLTGNPLAGS 414 (490)
T ss_pred hhHhhhcCEeeeehhhhhHhhh------hhhHhhhhheeccccccchhhHHHhcccccc-----cHHHHHhhcCCCcccc
Confidence 2223356889999998887543 34455578999999999887643 3334443 77999999999765
Q ss_pred -hHHHHHHHHHHHhCCCCceeEEEcccCccchh
Q 007577 542 -DDGAFAIAQALKANEDVAVTSLNLANNFLTKF 573 (597)
Q Consensus 542 -~~~~~~l~~~l~~~~~~~L~~L~L~~N~i~~~ 573 (597)
+.-...+..+-. .-.++.|.+-.-++.
T Consensus 415 vdYRTKVLa~FGE-----RaSE~~LD~~~~~~~ 442 (490)
T KOG1259|consen 415 VDYRTKVLARFGE-----RASEISLDNEPGNQQ 442 (490)
T ss_pred chHHHHHHHHHhh-----hhhheecCCCCcchh
Confidence 333334443322 134666666544433
No 37
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.91 E-value=3.7e-10 Score=101.32 Aligned_cols=128 Identities=23% Similarity=0.262 Sum_probs=40.4
Q ss_pred ccceeeccCCCCChhHHHHHHHHHH-cCCCCcEEEccCCCCCcHHHHHHHHHHhcCCCccEEEccCCCCChHHHHHHHHH
Q 007577 360 KLAVLDIGNNSISAKGAFHVAEYIK-NCKSLLWINLYMNDIGDEGAEKIADALKQNRTITTIDLGGNNIHSKGASAIARV 438 (597)
Q Consensus 360 ~L~~L~Ls~n~l~~~~~~~l~~~l~-~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~ 438 (597)
++++|+|.+|.|+. + +.+. .+.+|+.|+|++|.|+.. ..+..++.|++|++++|+|++.+. .+.
T Consensus 20 ~~~~L~L~~n~I~~-----I-e~L~~~l~~L~~L~Ls~N~I~~l------~~l~~L~~L~~L~L~~N~I~~i~~-~l~-- 84 (175)
T PF14580_consen 20 KLRELNLRGNQIST-----I-ENLGATLDKLEVLDLSNNQITKL------EGLPGLPRLKTLDLSNNRISSISE-GLD-- 84 (175)
T ss_dssp ----------------------S--TT-TT--EEE-TTS--S--------TT----TT--EEE--SS---S-CH-HHH--
T ss_pred cccccccccccccc-----c-cchhhhhcCCCEEECCCCCCccc------cCccChhhhhhcccCCCCCCcccc-chH--
Confidence 56677777776665 2 2233 356777777777777652 234446777777777777766321 111
Q ss_pred hhcCCCcCEEECcCCCCCHHHHHHHHHHHhhCCCcCEEecCCCCCChhHHHHHHHHHhcCCCccEEEcc
Q 007577 439 LKDNSVITSLDLAYNPIGADGAKALSEVLKFHGNINTLKLGWCQIGASGAEFVADMLRYNNTISILDLR 507 (597)
Q Consensus 439 l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~ 507 (597)
..+|+|++|++++|+|.+... + ..+..+++|++|++.+|.+... ..+-...+..+|+|+.||-.
T Consensus 85 -~~lp~L~~L~L~~N~I~~l~~--l-~~L~~l~~L~~L~L~~NPv~~~-~~YR~~vi~~lP~Lk~LD~~ 148 (175)
T PF14580_consen 85 -KNLPNLQELYLSNNKISDLNE--L-EPLSSLPKLRVLSLEGNPVCEK-KNYRLFVIYKLPSLKVLDGQ 148 (175)
T ss_dssp -HH-TT--EEE-TTS---SCCC--C-GGGGG-TT--EEE-TT-GGGGS-TTHHHHHHHH-TT-SEETTE
T ss_pred -HhCCcCCEEECcCCcCCChHH--h-HHHHcCCCcceeeccCCcccch-hhHHHHHHHHcChhheeCCE
Confidence 234777777777776654211 1 2334456777777777766543 12222334455666666643
No 38
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.91 E-value=1.1e-09 Score=102.54 Aligned_cols=218 Identities=21% Similarity=0.173 Sum_probs=113.8
Q ss_pred HHHHHHcCCCccEEEeccCC--CChhhH--HHHHHHHhhCCCccEEEcCCCCCChHHHHHHHHHhhcCCCCCEEEccCCC
Q 007577 266 IAELLKNNSILRVLELNNNM--IDYSGF--TSLAEALLENSTIRSLHLNGNYGGALGANALAKGLEGNKSLRELHLHGNS 341 (597)
Q Consensus 266 l~~~l~~~~~L~~L~Ls~n~--i~~~~~--~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~ 341 (597)
++..+.-+..|..|-+++.. |....+ ..++-.+....+|+.+.++.|.-..+ ......-|.|+.+.+.+..
T Consensus 174 ~~hildf~~~l~~l~vs~~~~p~~~sni~~~~l~f~l~~f~~l~~~~~s~~~~~~i-----~~~~~~kptl~t~~v~~s~ 248 (490)
T KOG1259|consen 174 FSHVLDFCTQLVALVVTPVKDPIDRSNIIPNRLSFNLNAFRNLKTLKFSALSTENI-----VDIELLKPTLQTICVHNTT 248 (490)
T ss_pred hHHHHHhhhheeEEEecCCCCCCccccccccccccchHHhhhhheeeeeccchhhe-----eceeecCchhheeeeeccc
Confidence 45555556778888887652 222111 11111122245677777776642211 1111234567777666554
Q ss_pred CChHHH----HHHHHhh--------------hcCccccceeeccCCCCChhHHHHHHHHHHcCCCCcEEEccCCCCCcHH
Q 007577 342 IGDEGI----RALMSGL--------------SSRKGKLAVLDIGNNSISAKGAFHVAEYIKNCKSLLWINLYMNDIGDEG 403 (597)
Q Consensus 342 i~~~~~----~~l~~~l--------------~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~ 403 (597)
+.+... ..+...+ ......|++|||++|.|+. +.+.++-.|.++.|++++|.|...
T Consensus 249 ~~~~~~l~pe~~~~D~~~~E~~t~~G~~~~~~dTWq~LtelDLS~N~I~~-----iDESvKL~Pkir~L~lS~N~i~~v- 322 (490)
T KOG1259|consen 249 IQDVPSLLPETILADPSGSEPSTSNGSALVSADTWQELTELDLSGNLITQ-----IDESVKLAPKLRRLILSQNRIRTV- 322 (490)
T ss_pred ccccccccchhhhcCccCCCCCccCCceEEecchHhhhhhccccccchhh-----hhhhhhhccceeEEeccccceeee-
Confidence 432110 0000000 0111246777777777666 556666677777777777766642
Q ss_pred HHHHHHHHhcCCCccEEEccCCCCChHHHHHHHHHhhcCCCcCEEECcCCCCCHHHHHHHHHHHhhCCCcCEEecCCCCC
Q 007577 404 AEKIADALKQNRTITTIDLGGNNIHSKGASAIARVLKDNSVITSLDLAYNPIGADGAKALSEVLKFHGNINTLKLGWCQI 483 (597)
Q Consensus 404 ~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~i 483 (597)
+.+..+++|++|||++|.++.. ..+-.++-++++|.|++|.|.+. ..+..+-+|..|++++|+|
T Consensus 323 -----~nLa~L~~L~~LDLS~N~Ls~~-----~Gwh~KLGNIKtL~La~N~iE~L------SGL~KLYSLvnLDl~~N~I 386 (490)
T KOG1259|consen 323 -----QNLAELPQLQLLDLSGNLLAEC-----VGWHLKLGNIKTLKLAQNKIETL------SGLRKLYSLVNLDLSSNQI 386 (490)
T ss_pred -----hhhhhcccceEeecccchhHhh-----hhhHhhhcCEeeeehhhhhHhhh------hhhHhhhhheeccccccch
Confidence 2244567777777777766542 22222335677777777765332 1223334677777777776
Q ss_pred ChhHHHHHHHHHhcCCCccEEEccCCCCCh
Q 007577 484 GASGAEFVADMLRYNNTISILDLRANGLRD 513 (597)
Q Consensus 484 ~~~~~~~l~~~l~~~~~L~~L~l~~n~i~~ 513 (597)
..... ...+.+.|-|+++.+.+|.+..
T Consensus 387 e~lde---V~~IG~LPCLE~l~L~~NPl~~ 413 (490)
T KOG1259|consen 387 EELDE---VNHIGNLPCLETLRLTGNPLAG 413 (490)
T ss_pred hhHHH---hcccccccHHHHHhhcCCCccc
Confidence 54321 1234445667777777776553
No 39
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=98.75 E-value=1e-07 Score=102.45 Aligned_cols=43 Identities=28% Similarity=0.391 Sum_probs=25.7
Q ss_pred CccEEEccCC-CCChHHHHHHHHHHhhcCccccEEEccCC-CCChHHHH
Q 007577 500 TISILDLRAN-GLRDEGAKCLAQSFKVVNEALTSIDLAFN-EIRDDGAF 546 (597)
Q Consensus 500 ~L~~L~l~~n-~i~~~~~~~l~~~l~~~n~~L~~L~Ls~n-~i~~~~~~ 546 (597)
.++.|+++.+ ..++..+......+ .+++.+++.++ .++.....
T Consensus 402 ~l~~L~l~~~~~~t~~~l~~~~~~~----~~~~~l~~~~~~~~~~~~~~ 446 (482)
T KOG1947|consen 402 SLRVLNLSDCRLVTDKGLRCLADSC----SNLKDLDLSGCRVITLKSLE 446 (482)
T ss_pred ccceEecccCccccccchHHHhhhh----hccccCCccCcccccchhhh
Confidence 3777787777 45665555554421 45777777777 44544433
No 40
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=98.65 E-value=4.2e-07 Score=97.61 Aligned_cols=239 Identities=23% Similarity=0.273 Sum_probs=134.1
Q ss_pred hCCCccEEEcCCCC-CChHHHHHHHHHhhcCCCCCEEEccCC--CCChHHHHHHHHhhhcCccccceeeccCCC-CChhH
Q 007577 300 ENSTIRSLHLNGNY-GGALGANALAKGLEGNKSLRELHLHGN--SIGDEGIRALMSGLSSRKGKLAVLDIGNNS-ISAKG 375 (597)
Q Consensus 300 ~~~~L~~L~L~~n~-i~~~~~~~l~~~l~~~~~L~~L~Ls~n--~i~~~~~~~l~~~l~~~~~~L~~L~Ls~n~-l~~~~ 375 (597)
.++.|+.|.+.++. +++.. +......++.|++|+++++ .+...+..... +...+.+|+.|+++.+. +++.+
T Consensus 186 ~~~~L~~l~l~~~~~~~~~~---~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~--~~~~~~~L~~l~l~~~~~isd~~ 260 (482)
T KOG1947|consen 186 SCPLLKRLSLSGCSKITDDS---LDALALKCPNLEELDLSGCCLLITLSPLLLLL--LLSICRKLKSLDLSGCGLVTDIG 260 (482)
T ss_pred hCchhhHhhhcccccCChhh---HHHHHhhCchhheecccCcccccccchhHhhh--hhhhcCCcCccchhhhhccCchh
Confidence 37888888888774 44433 3344567888999998873 22222211111 22344678888888887 77765
Q ss_pred HHHHHHHHHcCCCCcEEEccCCC-CCcHHHHHHHHHHhcCCCccEEEccCC-CCChHHHHHHHHHhhcCCCcCEEECcCC
Q 007577 376 AFHVAEYIKNCKSLLWINLYMND-IGDEGAEKIADALKQNRTITTIDLGGN-NIHSKGASAIARVLKDNSVITSLDLAYN 453 (597)
Q Consensus 376 ~~~l~~~l~~~~~L~~L~Ls~n~-l~~~~~~~l~~~l~~~~~L~~L~L~~n-~l~~~~~~~l~~~l~~~~~L~~L~Ls~n 453 (597)
+..+. ..|++|++|.+.+|. +++.|+..+... ++.|++|++++| .+++.+...+ ..+|++|+.|.+...
T Consensus 261 l~~l~---~~c~~L~~L~l~~c~~lt~~gl~~i~~~---~~~L~~L~l~~c~~~~d~~l~~~---~~~c~~l~~l~~~~~ 331 (482)
T KOG1947|consen 261 LSALA---SRCPNLETLSLSNCSNLTDEGLVSIAER---CPSLRELDLSGCHGLTDSGLEAL---LKNCPNLRELKLLSL 331 (482)
T ss_pred HHHHH---hhCCCcceEccCCCCccchhHHHHHHHh---cCcccEEeeecCccchHHHHHHH---HHhCcchhhhhhhhc
Confidence 55444 338888888877775 788877776654 577888888888 4445555555 333777776655443
Q ss_pred C----CCHHHHHHHH---------HHHhhCCCcCEEecCCCCCChhHHHHHHHHHhcCCCccEEEccCC-CCChHHHHHH
Q 007577 454 P----IGADGAKALS---------EVLKFHGNINTLKLGWCQIGASGAEFVADMLRYNNTISILDLRAN-GLRDEGAKCL 519 (597)
Q Consensus 454 ~----i~~~~~~~l~---------~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~n-~i~~~~~~~l 519 (597)
. +++.++..+. -.+..+++++.+.+..+.+++.+. .+.+.+| .++ .+....
T Consensus 332 ~~c~~l~~~~l~~~~~~~~d~~~~~~~~~~~~l~~~~l~~~~~~~~~~--------------~~~l~gc~~l~-~~l~~~ 396 (482)
T KOG1947|consen 332 NGCPSLTDLSLSGLLTLTSDDLAELILRSCPKLTDLSLSYCGISDLGL--------------ELSLRGCPNLT-ESLELR 396 (482)
T ss_pred CCCccHHHHHHHHhhccCchhHhHHHHhcCCCcchhhhhhhhccCcch--------------HHHhcCCcccc-hHHHHH
Confidence 2 3333222111 112234444444444444322221 1222222 122 222222
Q ss_pred HHHHhhcCccccEEEccCC-CCChHHHHHHHHHHHhCCCCceeEEEcccCcc-chhhHH
Q 007577 520 AQSFKVVNEALTSIDLAFN-EIRDDGAFAIAQALKANEDVAVTSLNLANNFL-TKFGQS 576 (597)
Q Consensus 520 ~~~l~~~n~~L~~L~Ls~n-~i~~~~~~~l~~~l~~~~~~~L~~L~L~~N~i-~~~~~~ 576 (597)
... ...++.|+++.+ ..++......... + ..+..+++.++.. +..+..
T Consensus 397 ~~~----~~~l~~L~l~~~~~~t~~~l~~~~~~---~--~~~~~l~~~~~~~~~~~~~~ 446 (482)
T KOG1947|consen 397 LCR----SDSLRVLNLSDCRLVTDKGLRCLADS---C--SNLKDLDLSGCRVITLKSLE 446 (482)
T ss_pred hcc----CCccceEecccCccccccchHHHhhh---h--hccccCCccCcccccchhhh
Confidence 111 123899999999 4677777666543 1 2378888888644 434433
No 41
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.61 E-value=2.7e-08 Score=103.90 Aligned_cols=150 Identities=29% Similarity=0.355 Sum_probs=77.5
Q ss_pred CccEEEeccCCCChhhHHHHHHHHhhCCCccEEEcCCCCCChHHHHHHHHHhhcCCCCCEEEccCCCCChHHHHHHHHhh
Q 007577 275 ILRVLELNNNMIDYSGFTSLAEALLENSTIRSLHLNGNYGGALGANALAKGLEGNKSLRELHLHGNSIGDEGIRALMSGL 354 (597)
Q Consensus 275 ~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l 354 (597)
+|+.|++++|.+ ..++..+..++.|+.|++++|.+.+.+. .....+.|+.|++++|.+.+.....
T Consensus 141 nL~~L~l~~N~i-----~~l~~~~~~l~~L~~L~l~~N~l~~l~~-----~~~~~~~L~~L~ls~N~i~~l~~~~----- 205 (394)
T COG4886 141 NLKELDLSDNKI-----ESLPSPLRNLPNLKNLDLSFNDLSDLPK-----LLSNLSNLNNLDLSGNKISDLPPEI----- 205 (394)
T ss_pred hcccccccccch-----hhhhhhhhccccccccccCCchhhhhhh-----hhhhhhhhhheeccCCccccCchhh-----
Confidence 455555555555 2222334445555555555555544332 1114455666666666655421110
Q ss_pred hcCccccceeeccCCCCChhHHHHHHHHHHcCCCCcEEEccCCCCCcHHHHHHHHHHhcCCCccEEEccCCCCChHHHHH
Q 007577 355 SSRKGKLAVLDIGNNSISAKGAFHVAEYIKNCKSLLWINLYMNDIGDEGAEKIADALKQNRTITTIDLGGNNIHSKGASA 434 (597)
Q Consensus 355 ~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~ 434 (597)
.....|++|++++|.+.. ....+..+.++..|.+.+|.+.+ +...+..++.+++|++++|.+++...
T Consensus 206 -~~~~~L~~l~~~~N~~~~-----~~~~~~~~~~l~~l~l~~n~~~~-----~~~~~~~l~~l~~L~~s~n~i~~i~~-- 272 (394)
T COG4886 206 -ELLSALEELDLSNNSIIE-----LLSSLSNLKNLSGLELSNNKLED-----LPESIGNLSNLETLDLSNNQISSISS-- 272 (394)
T ss_pred -hhhhhhhhhhhcCCccee-----cchhhhhcccccccccCCceeee-----ccchhccccccceecccccccccccc--
Confidence 011146666666664222 33445566666666666666554 12334445667777777776666322
Q ss_pred HHHHhhcCCCcCEEECcCCCCC
Q 007577 435 IARVLKDNSVITSLDLAYNPIG 456 (597)
Q Consensus 435 l~~~l~~~~~L~~L~Ls~n~i~ 456 (597)
+....+++.|++++|.+.
T Consensus 273 ----~~~~~~l~~L~~s~n~~~ 290 (394)
T COG4886 273 ----LGSLTNLRELDLSGNSLS 290 (394)
T ss_pred ----ccccCccCEEeccCcccc
Confidence 333466777777776554
No 42
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.61 E-value=5.9e-10 Score=112.84 Aligned_cols=184 Identities=23% Similarity=0.269 Sum_probs=81.7
Q ss_pred eeccCCCCChhHHHHHHHHHHcCCCCcEEEccCCCCCcHHHHHHHHHHhcCCCccEEEccCCCCChHHHHHHHHHhhcCC
Q 007577 364 LDIGNNSISAKGAFHVAEYIKNCKSLLWINLYMNDIGDEGAEKIADALKQNRTITTIDLGGNNIHSKGASAIARVLKDNS 443 (597)
Q Consensus 364 L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~ 443 (597)
.|++.|++.. ++..+..+..|+.+.|+.|.+.. ++.++.++..|.+|+|+.|+++. ++..++.|+
T Consensus 80 aDlsrNR~~e-----lp~~~~~f~~Le~liLy~n~~r~-----ip~~i~~L~~lt~l~ls~NqlS~-----lp~~lC~lp 144 (722)
T KOG0532|consen 80 ADLSRNRFSE-----LPEEACAFVSLESLILYHNCIRT-----IPEAICNLEALTFLDLSSNQLSH-----LPDGLCDLP 144 (722)
T ss_pred hhcccccccc-----CchHHHHHHHHHHHHHHhcccee-----cchhhhhhhHHHHhhhccchhhc-----CChhhhcCc
Confidence 4444444444 33333444444444444444432 33334444444555555544433 233333333
Q ss_pred CcCEEECcCCCCCHHHHHHHHHHHhhCCCcCEEecCCCCCChhHHHHHHHHHhcCCCccEEEccCCCCChHHHHHHHHHH
Q 007577 444 VITSLDLAYNPIGADGAKALSEVLKFHGNINTLKLGWCQIGASGAEFVADMLRYNNTISILDLRANGLRDEGAKCLAQSF 523 (597)
Q Consensus 444 ~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~n~i~~~~~~~l~~~l 523 (597)
|+.|-+++|+++. +...++...+|..|+.+.|++... ..-+.+...|+.|.++.|++.+.. ..++ .+
T Consensus 145 -Lkvli~sNNkl~~-----lp~~ig~~~tl~~ld~s~nei~sl-----psql~~l~slr~l~vrRn~l~~lp-~El~-~L 211 (722)
T KOG0532|consen 145 -LKVLIVSNNKLTS-----LPEEIGLLPTLAHLDVSKNEIQSL-----PSQLGYLTSLRDLNVRRNHLEDLP-EELC-SL 211 (722)
T ss_pred -ceeEEEecCcccc-----CCcccccchhHHHhhhhhhhhhhc-----hHHhhhHHHHHHHHHhhhhhhhCC-HHHh-CC
Confidence 4555555554432 112222234455555555554222 112222345555555555544431 1222 11
Q ss_pred hhcCccccEEEccCCCCChHHHHHHHHHHHhCCCCceeEEEcccCccchhhHHHHHHHHHHHhh
Q 007577 524 KVVNEALTSIDLAFNEIRDDGAFAIAQALKANEDVAVTSLNLANNFLTKFGQSALTDAKDLVYE 587 (597)
Q Consensus 524 ~~~n~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~N~i~~~~~~~l~~~~~~~~~ 587 (597)
.|..||+|.|+|+. .+..|.++ ..|++|-|.+|.+.....+.+.+++-++++
T Consensus 212 -----pLi~lDfScNkis~-iPv~fr~m------~~Lq~l~LenNPLqSPPAqIC~kGkVHIFK 263 (722)
T KOG0532|consen 212 -----PLIRLDFSCNKISY-LPVDFRKM------RHLQVLQLENNPLQSPPAQICEKGKVHIFK 263 (722)
T ss_pred -----ceeeeecccCceee-cchhhhhh------hhheeeeeccCCCCCChHHHHhccceeeee
Confidence 25566666666552 33344333 126666666666666666665555444443
No 43
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.61 E-value=2.4e-08 Score=104.24 Aligned_cols=196 Identities=26% Similarity=0.310 Sum_probs=115.3
Q ss_pred cEEEeccCCCChhhHHHHHHHHhhCCCccEEEcCCCCCChHHHHHHHHHhhcC-CCCCEEEccCCCCChHHHHHHHHhhh
Q 007577 277 RVLELNNNMIDYSGFTSLAEALLENSTIRSLHLNGNYGGALGANALAKGLEGN-KSLRELHLHGNSIGDEGIRALMSGLS 355 (597)
Q Consensus 277 ~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~-~~L~~L~Ls~n~i~~~~~~~l~~~l~ 355 (597)
..+++..+.+... ...+...+.++.|++.+|.+++.... .... ++|+.|++++|.+.... ..+
T Consensus 96 ~~l~~~~~~~~~~-----~~~~~~~~~l~~L~l~~n~i~~i~~~-----~~~~~~nL~~L~l~~N~i~~l~-----~~~- 159 (394)
T COG4886 96 PSLDLNLNRLRSN-----ISELLELTNLTSLDLDNNNITDIPPL-----IGLLKSNLKELDLSDNKIESLP-----SPL- 159 (394)
T ss_pred ceeeccccccccC-----chhhhcccceeEEecCCcccccCccc-----cccchhhcccccccccchhhhh-----hhh-
Confidence 3577777766211 11222346788888888877665431 2233 26788888888776531 111
Q ss_pred cCccccceeeccCCCCChhHHHHHHHHHHcCCCCcEEEccCCCCCcHHHHHHHHHHhcCCCccEEEccCCCCChHHHHHH
Q 007577 356 SRKGKLAVLDIGNNSISAKGAFHVAEYIKNCKSLLWINLYMNDIGDEGAEKIADALKQNRTITTIDLGGNNIHSKGASAI 435 (597)
Q Consensus 356 ~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l 435 (597)
..+++|+.|++++|.+++ ++......++|+.|++++|++.+ ++........|++|.+++|.+.. .
T Consensus 160 ~~l~~L~~L~l~~N~l~~-----l~~~~~~~~~L~~L~ls~N~i~~-----l~~~~~~~~~L~~l~~~~N~~~~-----~ 224 (394)
T COG4886 160 RNLPNLKNLDLSFNDLSD-----LPKLLSNLSNLNNLDLSGNKISD-----LPPEIELLSALEELDLSNNSIIE-----L 224 (394)
T ss_pred hccccccccccCCchhhh-----hhhhhhhhhhhhheeccCCcccc-----CchhhhhhhhhhhhhhcCCccee-----c
Confidence 244577888888887777 45444466777788888877766 33322233457777777774221 2
Q ss_pred HHHhhcCCCcCEEECcCCCCCHHHHHHHHHHHhhCCCcCEEecCCCCCChhHHHHHHHHHhcCCCccEEEccCCCCChH
Q 007577 436 ARVLKDNSVITSLDLAYNPIGADGAKALSEVLKFHGNINTLKLGWCQIGASGAEFVADMLRYNNTISILDLRANGLRDE 514 (597)
Q Consensus 436 ~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~n~i~~~ 514 (597)
...+.+..++..+.+.+|++.+. ...+...++++.|++++|++++... +....+++.|++++|.+...
T Consensus 225 ~~~~~~~~~l~~l~l~~n~~~~~-----~~~~~~l~~l~~L~~s~n~i~~i~~------~~~~~~l~~L~~s~n~~~~~ 292 (394)
T COG4886 225 LSSLSNLKNLSGLELSNNKLEDL-----PESIGNLSNLETLDLSNNQISSISS------LGSLTNLRELDLSGNSLSNA 292 (394)
T ss_pred chhhhhcccccccccCCceeeec-----cchhccccccceecccccccccccc------ccccCccCEEeccCcccccc
Confidence 22234446666777777765441 2333445667777777777765432 33346777777777766543
No 44
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.60 E-value=2e-09 Score=112.55 Aligned_cols=151 Identities=24% Similarity=0.237 Sum_probs=75.6
Q ss_pred CCCcEEEcCCCCCCHHHHHHHHHHhccCCCccEEEeccCCCCHHHHHHHHHHhhhCCCccEEEccCCCCChhHHHHHHHH
Q 007577 162 RAFSSVDMSGRNFGDEGLFFLAESLGYNQTAEEVSFAANGITAAGIKAFDGVLQSNIALKTLNLSGNPIGDEGVKCLCDI 241 (597)
Q Consensus 162 ~~L~~L~Ls~~~l~~~~~~~l~~~l~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~ 241 (597)
+..+.++..++.+...... . ..+..++.+++..|.+.. +...+..+.+|+.|++.+|.|... ...
T Consensus 49 ~~~~~~~~~~~~~~~~~~~-~----~~l~~l~~l~l~~n~i~~-----~~~~l~~~~~l~~l~l~~n~i~~i-----~~~ 113 (414)
T KOG0531|consen 49 SDLEEIDLIFNLDGSDEDL-V----ESLTSLKELNLRQNLIAK-----ILNHLSKLKSLEALDLYDNKIEKI-----ENL 113 (414)
T ss_pred chhhhhcchhccccchhhh-H----HHhHhHHhhccchhhhhh-----hhcccccccceeeeeccccchhhc-----ccc
Confidence 4455555555544332211 1 223556666666665543 223334456677777777766542 111
Q ss_pred HhcCCCcCEEEecCCCCChHHHHHHHHHHHcCCCccEEEeccCCCChhhHHHHHHHHhhCCCccEEEcCCCCCChHHHHH
Q 007577 242 LVDNAGVERLQLSSVDLRDEGAKAIAELLKNNSILRVLELNNNMIDYSGFTSLAEALLENSTIRSLHLNGNYGGALGANA 321 (597)
Q Consensus 242 l~~~~~L~~L~Ls~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~ 321 (597)
+..+++|++|++++|.|++. ..+..++.|+.|++++|.|.+ ...+..+..|+.+++++|.+......
T Consensus 114 l~~~~~L~~L~ls~N~I~~i------~~l~~l~~L~~L~l~~N~i~~------~~~~~~l~~L~~l~l~~n~i~~ie~~- 180 (414)
T KOG0531|consen 114 LSSLVNLQVLDLSFNKITKL------EGLSTLTLLKELNLSGNLISD------ISGLESLKSLKLLDLSYNRIVDIEND- 180 (414)
T ss_pred hhhhhcchheeccccccccc------cchhhccchhhheeccCcchh------ccCCccchhhhcccCCcchhhhhhhh-
Confidence 33456667777777666653 112223456666666666632 11222245566666666655443221
Q ss_pred HHHHhhcCCCCCEEEccCCCCC
Q 007577 322 LAKGLEGNKSLRELHLHGNSIG 343 (597)
Q Consensus 322 l~~~l~~~~~L~~L~Ls~n~i~ 343 (597)
. +..+.+++.+++.+|.+.
T Consensus 181 --~-~~~~~~l~~l~l~~n~i~ 199 (414)
T KOG0531|consen 181 --E-LSELISLEELDLGGNSIR 199 (414)
T ss_pred --h-hhhccchHHHhccCCchh
Confidence 0 234455555556555543
No 45
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.57 E-value=8.5e-08 Score=89.97 Aligned_cols=220 Identities=18% Similarity=0.191 Sum_probs=110.6
Q ss_pred CCCcCEEEecCCCCChHHHHHHHHHHHcCCCccEEEeccCCCChhhHHHHHHHHhhCCCccEEEcCCCCCChHHHHHHHH
Q 007577 245 NAGVERLQLSSVDLRDEGAKAIAELLKNNSILRVLELNNNMIDYSGFTSLAEALLENSTIRSLHLNGNYGGALGANALAK 324 (597)
Q Consensus 245 ~~~L~~L~Ls~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~ 324 (597)
+..++.++|.+|.|++ +..++..+.++|.|+.|+|+.|.+... +..++ ....+|+.|-|.+..+...... .
T Consensus 70 ~~~v~elDL~~N~iSd--WseI~~ile~lP~l~~LNls~N~L~s~-I~~lp---~p~~nl~~lVLNgT~L~w~~~~---s 140 (418)
T KOG2982|consen 70 VTDVKELDLTGNLISD--WSEIGAILEQLPALTTLNLSCNSLSSD-IKSLP---LPLKNLRVLVLNGTGLSWTQST---S 140 (418)
T ss_pred hhhhhhhhcccchhcc--HHHHHHHHhcCccceEeeccCCcCCCc-cccCc---ccccceEEEEEcCCCCChhhhh---h
Confidence 3445555555555544 444555555555555555555554321 11111 1234566666666555443332 3
Q ss_pred HhhcCCCCCEEEccCCCCChHHHHHHHHhhhcCccccceeeccCCCCChhHHHHHHHHHHcCCCCcEEEccCCCCCcHHH
Q 007577 325 GLEGNKSLRELHLHGNSIGDEGIRALMSGLSSRKGKLAVLDIGNNSISAKGAFHVAEYIKNCKSLLWINLYMNDIGDEGA 404 (597)
Q Consensus 325 ~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~ 404 (597)
.+..+|.+++|+++.|++.......- ......+.+++|.+..|.. .-+......-+.+|++..+-+..|.+.+...
T Consensus 141 ~l~~lP~vtelHmS~N~~rq~n~Dd~--c~e~~s~~v~tlh~~~c~~--~~w~~~~~l~r~Fpnv~sv~v~e~PlK~~s~ 216 (418)
T KOG2982|consen 141 SLDDLPKVTELHMSDNSLRQLNLDDN--CIEDWSTEVLTLHQLPCLE--QLWLNKNKLSRIFPNVNSVFVCEGPLKTESS 216 (418)
T ss_pred hhhcchhhhhhhhccchhhhhccccc--cccccchhhhhhhcCCcHH--HHHHHHHhHHhhcccchheeeecCcccchhh
Confidence 34456666666666663221100000 0001122455565555532 2222333444567888888888887766422
Q ss_pred HHHHHHHhcCCCccEEEccCCCCChHHHHHHHHHhhcCCCcCEEECcCCCCCHHHHHHH--HHHHhhCCCcCEEecCCCC
Q 007577 405 EKIADALKQNRTITTIDLGGNNIHSKGASAIARVLKDNSVITSLDLAYNPIGADGAKAL--SEVLKFHGNINTLKLGWCQ 482 (597)
Q Consensus 405 ~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l--~~~l~~~~~L~~L~L~~n~ 482 (597)
+ +.....+.+..|+|+.++|.+... + ..+..++.|..|.++++++.+.--..- .-.+..+++++.|+=+ .
T Consensus 217 e---k~se~~p~~~~LnL~~~~idswas--v-D~Ln~f~~l~dlRv~~~Pl~d~l~~~err~llIaRL~~v~vLNGs--k 288 (418)
T KOG2982|consen 217 E---KGSEPFPSLSCLNLGANNIDSWAS--V-DALNGFPQLVDLRVSENPLSDPLRGGERRFLLIARLTKVQVLNGS--K 288 (418)
T ss_pred c---ccCCCCCcchhhhhcccccccHHH--H-HHHcCCchhheeeccCCcccccccCCcceEEEEeeccceEEecCc--c
Confidence 2 223345667778888888876432 2 234556888888888887765311100 0112335666666543 5
Q ss_pred CCh
Q 007577 483 IGA 485 (597)
Q Consensus 483 i~~ 485 (597)
|+.
T Consensus 289 Iss 291 (418)
T KOG2982|consen 289 ISS 291 (418)
T ss_pred cch
Confidence 543
No 46
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.54 E-value=3.6e-09 Score=110.67 Aligned_cols=248 Identities=24% Similarity=0.256 Sum_probs=157.9
Q ss_pred hcCCCcEEEcCCCCCCHHHHHHHHHHhccCCCccEEEeccCCCCHHHHHHHHHHhhhCCCccEEEccCCCCChhHHHHHH
Q 007577 160 ELRAFSSVDMSGRNFGDEGLFFLAESLGYNQTAEEVSFAANGITAAGIKAFDGVLQSNIALKTLNLSGNPIGDEGVKCLC 239 (597)
Q Consensus 160 ~~~~L~~L~Ls~~~l~~~~~~~l~~~l~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~ 239 (597)
.+..++.+.++.|.+.. +...+..+++|+.|++.+|+|... ...+..+++|++|++++|.|++.
T Consensus 70 ~l~~l~~l~l~~n~i~~-----~~~~l~~~~~l~~l~l~~n~i~~i-----~~~l~~~~~L~~L~ls~N~I~~i------ 133 (414)
T KOG0531|consen 70 SLTSLKELNLRQNLIAK-----ILNHLSKLKSLEALDLYDNKIEKI-----ENLLSSLVNLQVLDLSFNKITKL------ 133 (414)
T ss_pred HhHhHHhhccchhhhhh-----hhcccccccceeeeeccccchhhc-----ccchhhhhcchheeccccccccc------
Confidence 34555566677666654 334456678999999999987542 22255678899999999999875
Q ss_pred HHHhcCCCcCEEEecCCCCChHHHHHHHHHHHcCCCccEEEeccCCCChhhHHHHHHHHhhCCCccEEEcCCCCCChHHH
Q 007577 240 DILVDNAGVERLQLSSVDLRDEGAKAIAELLKNNSILRVLELNNNMIDYSGFTSLAEALLENSTIRSLHLNGNYGGALGA 319 (597)
Q Consensus 240 ~~l~~~~~L~~L~Ls~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~ 319 (597)
..+..++.|+.|++++|.|++.. .+..++.|+.+++++|++...... . +..+..++.+++.+|.+.....
T Consensus 134 ~~l~~l~~L~~L~l~~N~i~~~~------~~~~l~~L~~l~l~~n~i~~ie~~---~-~~~~~~l~~l~l~~n~i~~i~~ 203 (414)
T KOG0531|consen 134 EGLSTLTLLKELNLSGNLISDIS------GLESLKSLKLLDLSYNRIVDIEND---E-LSELISLEELDLGGNSIREIEG 203 (414)
T ss_pred cchhhccchhhheeccCcchhcc------CCccchhhhcccCCcchhhhhhhh---h-hhhccchHHHhccCCchhcccc
Confidence 34445577999999999988742 222357899999999998543221 1 3567899999999998765432
Q ss_pred HHHHHHhhcCCCCCEEEccCCCCChHHHHHHHHhhhcCcc--ccceeeccCCCCChhHHHHHHHHHHcCCCCcEEEccCC
Q 007577 320 NALAKGLEGNKSLRELHLHGNSIGDEGIRALMSGLSSRKG--KLAVLDIGNNSISAKGAFHVAEYIKNCKSLLWINLYMN 397 (597)
Q Consensus 320 ~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~--~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n 397 (597)
+..+..+..+++..|.+.... .+ .... .|+.+++++|.+.. +...+..++.+..|++..|
T Consensus 204 ------~~~~~~l~~~~l~~n~i~~~~--~l-----~~~~~~~L~~l~l~~n~i~~-----~~~~~~~~~~l~~l~~~~n 265 (414)
T KOG0531|consen 204 ------LDLLKKLVLLSLLDNKISKLE--GL-----NELVMLHLRELYLSGNRISR-----SPEGLENLKNLPVLDLSSN 265 (414)
T ss_pred ------hHHHHHHHHhhcccccceecc--Cc-----ccchhHHHHHHhcccCcccc-----ccccccccccccccchhhc
Confidence 223334445577777765421 01 0111 37888899988876 2245567788888888888
Q ss_pred CCCcHHHHHHHHHHhcCCCccEEEccCCCCChHHHHHHHHHhhcCCCcCEEECcCCCCCH
Q 007577 398 DIGDEGAEKIADALKQNRTITTIDLGGNNIHSKGASAIARVLKDNSVITSLDLAYNPIGA 457 (597)
Q Consensus 398 ~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~ 457 (597)
.+... ..+...+.+..+....+.+.......-.......+.++.+.+.+|.+..
T Consensus 266 ~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (414)
T KOG0531|consen 266 RISNL------EGLERLPKLSELWLNDNKLALSEAISQEYITSAAPTLVTLTLELNPIRK 319 (414)
T ss_pred ccccc------ccccccchHHHhccCcchhcchhhhhccccccccccccccccccCcccc
Confidence 77652 1122345555666666665532111111113344777778887776544
No 47
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.52 E-value=6.6e-08 Score=90.68 Aligned_cols=71 Identities=17% Similarity=0.169 Sum_probs=47.3
Q ss_pred HHHhhCCCcCEEecCCCCCChhHHHHHHHHHhcCCCccEEEccCCCCChHH-HHHHHHHHhhcCccccEEEccCCCCChH
Q 007577 465 EVLKFHGNINTLKLGWCQIGASGAEFVADMLRYNNTISILDLRANGLRDEG-AKCLAQSFKVVNEALTSIDLAFNEIRDD 543 (597)
Q Consensus 465 ~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~n~i~~~~-~~~l~~~l~~~n~~L~~L~Ls~n~i~~~ 543 (597)
...+..+++..+-+..|.+.+...+. .....+.+-.|+++.|+|.+.. +..+..+ +.|..|.+++|.+.+.
T Consensus 193 ~l~r~Fpnv~sv~v~e~PlK~~s~ek---~se~~p~~~~LnL~~~~idswasvD~Ln~f-----~~l~dlRv~~~Pl~d~ 264 (418)
T KOG2982|consen 193 KLSRIFPNVNSVFVCEGPLKTESSEK---GSEPFPSLSCLNLGANNIDSWASVDALNGF-----PQLVDLRVSENPLSDP 264 (418)
T ss_pred hHHhhcccchheeeecCcccchhhcc---cCCCCCcchhhhhcccccccHHHHHHHcCC-----chhheeeccCCccccc
Confidence 33345678888888888776543322 2223466778888888888743 3444444 7799999999988764
No 48
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.49 E-value=1.6e-08 Score=105.30 Aligned_cols=174 Identities=23% Similarity=0.272 Sum_probs=102.8
Q ss_pred cCCCcEEEcCCCCCCH-HHHHHHHHHhccCCCccEEEeccCCCCHHHHHHHHHHhhhC----------CCccEEEccCCC
Q 007577 161 LRAFSSVDMSGRNFGD-EGLFFLAESLGYNQTAEEVSFAANGITAAGIKAFDGVLQSN----------IALKTLNLSGNP 229 (597)
Q Consensus 161 ~~~L~~L~Ls~~~l~~-~~~~~l~~~l~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~----------~~L~~L~Ls~n~ 229 (597)
++.|++|.+++|.+.. .|+..|- ..|++|...+. +.++..++..| ..|...+.++|.
T Consensus 108 F~sLr~LElrg~~L~~~~GL~~lr------~qLe~LIC~~S------l~Al~~v~ascggd~~ns~~Wn~L~~a~fsyN~ 175 (1096)
T KOG1859|consen 108 FRSLRVLELRGCDLSTAKGLQELR------HQLEKLICHNS------LDALRHVFASCGGDISNSPVWNKLATASFSYNR 175 (1096)
T ss_pred ccceeeEEecCcchhhhhhhHHHH------Hhhhhhhhhcc------HHHHHHHHHHhccccccchhhhhHhhhhcchhh
Confidence 6778888888887753 2333222 24555443321 12222222221 146677777776
Q ss_pred CChhHHHHHHHHHhcCCCcCEEEecCCCCChHHHHHHHHHHHcCCCccEEEeccCCCChhhHHHHHHHHhhCCCccEEEc
Q 007577 230 IGDEGVKCLCDILVDNAGVERLQLSSVDLRDEGAKAIAELLKNNSILRVLELNNNMIDYSGFTSLAEALLENSTIRSLHL 309 (597)
Q Consensus 230 l~~~~~~~l~~~l~~~~~L~~L~Ls~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~L 309 (597)
+.. +-..+.-.+.|+.|+|++|++++. +.+..+++|++|||++|.+.. ++..=..-..|+.|.+
T Consensus 176 L~~-----mD~SLqll~ale~LnLshNk~~~v------~~Lr~l~~LkhLDlsyN~L~~-----vp~l~~~gc~L~~L~l 239 (1096)
T KOG1859|consen 176 LVL-----MDESLQLLPALESLNLSHNKFTKV------DNLRRLPKLKHLDLSYNCLRH-----VPQLSMVGCKLQLLNL 239 (1096)
T ss_pred HHh-----HHHHHHHHHHhhhhccchhhhhhh------HHHHhcccccccccccchhcc-----ccccchhhhhheeeee
Confidence 642 223333347788899999888774 356667889999999888742 2221111234888888
Q ss_pred CCCCCChHHHHHHHHHhhcCCCCCEEEccCCCCChHHHHHHHHhhhcCccccceeeccCCCCC
Q 007577 310 NGNYGGALGANALAKGLEGNKSLRELHLHGNSIGDEGIRALMSGLSSRKGKLAVLDIGNNSIS 372 (597)
Q Consensus 310 ~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~ 372 (597)
++|.++.. ..+.++++|+.||+++|-+.+..--.....+ ..|+.|+|.+|.+-
T Consensus 240 rnN~l~tL------~gie~LksL~~LDlsyNll~~hseL~pLwsL----s~L~~L~LeGNPl~ 292 (1096)
T KOG1859|consen 240 RNNALTTL------RGIENLKSLYGLDLSYNLLSEHSELEPLWSL----SSLIVLWLEGNPLC 292 (1096)
T ss_pred cccHHHhh------hhHHhhhhhhccchhHhhhhcchhhhHHHHH----HHHHHHhhcCCccc
Confidence 88876543 3466788888889888866543211111122 26888888888653
No 49
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.38 E-value=1.6e-07 Score=98.02 Aligned_cols=180 Identities=22% Similarity=0.183 Sum_probs=108.1
Q ss_pred hcCCCCCEEEccCCCCCh-HHHHHHHHhhhcCccccceeeccCCCCChhHHHHHH-HHHHc------CCCCcEEEccCCC
Q 007577 327 EGNKSLRELHLHGNSIGD-EGIRALMSGLSSRKGKLAVLDIGNNSISAKGAFHVA-EYIKN------CKSLLWINLYMND 398 (597)
Q Consensus 327 ~~~~~L~~L~Ls~n~i~~-~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~-~~l~~------~~~L~~L~Ls~n~ 398 (597)
....+|++|.+.+|.+.. .|+..+-. +|++|--.+ .+ +.+..+. ...+. ...|...+.++|.
T Consensus 106 fpF~sLr~LElrg~~L~~~~GL~~lr~-------qLe~LIC~~-Sl--~Al~~v~ascggd~~ns~~Wn~L~~a~fsyN~ 175 (1096)
T KOG1859|consen 106 FPFRSLRVLELRGCDLSTAKGLQELRH-------QLEKLICHN-SL--DALRHVFASCGGDISNSPVWNKLATASFSYNR 175 (1096)
T ss_pred ccccceeeEEecCcchhhhhhhHHHHH-------hhhhhhhhc-cH--HHHHHHHHHhccccccchhhhhHhhhhcchhh
Confidence 356789999999998754 33333322 455554332 11 1111111 11111 1246666677775
Q ss_pred CCcHHHHHHHHHHhcCCCccEEEccCCCCChHHHHHHHHHhhcCCCcCEEECcCCCCCHHHHHHHHHHHhhCCCcCEEec
Q 007577 399 IGDEGAEKIADALKQNRTITTIDLGGNNIHSKGASAIARVLKDNSVITSLDLAYNPIGADGAKALSEVLKFHGNINTLKL 478 (597)
Q Consensus 399 l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~L 478 (597)
+.- +-..+.-++.|++|+|++|++++.. .+..|++|++|||++|.+.... .+... . .+|+.|++
T Consensus 176 L~~-----mD~SLqll~ale~LnLshNk~~~v~------~Lr~l~~LkhLDlsyN~L~~vp--~l~~~--g-c~L~~L~l 239 (1096)
T KOG1859|consen 176 LVL-----MDESLQLLPALESLNLSHNKFTKVD------NLRRLPKLKHLDLSYNCLRHVP--QLSMV--G-CKLQLLNL 239 (1096)
T ss_pred HHh-----HHHHHHHHHHhhhhccchhhhhhhH------HHHhcccccccccccchhcccc--ccchh--h-hhheeeee
Confidence 542 3334444577899999999888743 3556799999999999775421 12111 1 35899999
Q ss_pred CCCCCChhHHHHHHHHHhcCCCccEEEccCCCCChHHHHHHHHHHhhcCccccEEEccCCCCCh
Q 007577 479 GWCQIGASGAEFVADMLRYNNTISILDLRANGLRDEGAKCLAQSFKVVNEALTSIDLAFNEIRD 542 (597)
Q Consensus 479 ~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~n~i~~~~~~~l~~~l~~~n~~L~~L~Ls~n~i~~ 542 (597)
.+|.++.. . .+.+.++|+.||+++|-|.+-.--.....+ ..|+.|+|.+|.+-.
T Consensus 240 rnN~l~tL--~----gie~LksL~~LDlsyNll~~hseL~pLwsL----s~L~~L~LeGNPl~c 293 (1096)
T KOG1859|consen 240 RNNALTTL--R----GIENLKSLYGLDLSYNLLSEHSELEPLWSL----SSLIVLWLEGNPLCC 293 (1096)
T ss_pred cccHHHhh--h----hHHhhhhhhccchhHhhhhcchhhhHHHHH----HHHHHHhhcCCcccc
Confidence 99887553 2 233448889999999877664322222222 348889999997753
No 50
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=98.33 E-value=3.6e-06 Score=92.22 Aligned_cols=34 Identities=15% Similarity=0.086 Sum_probs=20.4
Q ss_pred CCccEEEcCCCCCChHHHHHHHHHhhcCCCCCEEEccCC
Q 007577 302 STIRSLHLNGNYGGALGANALAKGLEGNKSLRELHLHGN 340 (597)
Q Consensus 302 ~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n 340 (597)
-++...++.+..+.....+.+ ... .|++|.+.+.
T Consensus 60 f~ltki~l~~~~~~~~~~~~l----~~~-~L~sl~LGnl 93 (699)
T KOG3665|consen 60 FNLTKIDLKNVTLQHQTLEML----RKQ-DLESLKLGNL 93 (699)
T ss_pred heeEEeeccceecchhHHHHH----hhc-cccccCCcch
Confidence 467777777776665555332 233 3777777654
No 51
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=98.30 E-value=3.1e-06 Score=92.65 Aligned_cols=35 Identities=17% Similarity=0.363 Sum_probs=22.8
Q ss_pred CCCccEEEccCCCCChhHHHHHHHHHhcCCCcCEEEecCC
Q 007577 217 NIALKTLNLSGNPIGDEGVKCLCDILVDNAGVERLQLSSV 256 (597)
Q Consensus 217 ~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~~ 256 (597)
.-++...++.+..+.......+.. ..|++|.+.+.
T Consensus 59 ~f~ltki~l~~~~~~~~~~~~l~~-----~~L~sl~LGnl 93 (699)
T KOG3665|consen 59 KFNLTKIDLKNVTLQHQTLEMLRK-----QDLESLKLGNL 93 (699)
T ss_pred hheeEEeeccceecchhHHHHHhh-----ccccccCCcch
Confidence 346888888887776664444332 33888888654
No 52
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.25 E-value=2.3e-08 Score=101.65 Aligned_cols=195 Identities=22% Similarity=0.223 Sum_probs=131.5
Q ss_pred cCEEEecCCCCChHHHHHHHHHHHcCCCccEEEeccCCCChhhHHHHHHHHhhCCCccEEEcCCCCCChHHHHHHHHHhh
Q 007577 248 VERLQLSSVDLRDEGAKAIAELLKNNSILRVLELNNNMIDYSGFTSLAEALLENSTIRSLHLNGNYGGALGANALAKGLE 327 (597)
Q Consensus 248 L~~L~Ls~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~ 327 (597)
-...+++.|++... +..+..+-.|+.+.++.|.| ..++..+.++..|..|+|+.|+++..+. .+.
T Consensus 77 t~~aDlsrNR~~el-----p~~~~~f~~Le~liLy~n~~-----r~ip~~i~~L~~lt~l~ls~NqlS~lp~-----~lC 141 (722)
T KOG0532|consen 77 TVFADLSRNRFSEL-----PEEACAFVSLESLILYHNCI-----RTIPEAICNLEALTFLDLSSNQLSHLPD-----GLC 141 (722)
T ss_pred hhhhhccccccccC-----chHHHHHHHHHHHHHHhccc-----eecchhhhhhhHHHHhhhccchhhcCCh-----hhh
Confidence 34567888877652 22223335578888888877 5667777788888999999988765543 233
Q ss_pred cCCCCCEEEccCCCCChHHHHHHHHhhhcCccccceeeccCCCCChhHHHHHHHHHHcCCCCcEEEccCCCCCcHHHHHH
Q 007577 328 GNKSLRELHLHGNSIGDEGIRALMSGLSSRKGKLAVLDIGNNSISAKGAFHVAEYIKNCKSLLWINLYMNDIGDEGAEKI 407 (597)
Q Consensus 328 ~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l 407 (597)
.+ -|+.|-+++|+++. ++..+. ..+.|..||.+.|.+.. ++..+..+.+|+.|.+..|++.+ +
T Consensus 142 ~l-pLkvli~sNNkl~~-----lp~~ig-~~~tl~~ld~s~nei~s-----lpsql~~l~slr~l~vrRn~l~~-----l 204 (722)
T KOG0532|consen 142 DL-PLKVLIVSNNKLTS-----LPEEIG-LLPTLAHLDVSKNEIQS-----LPSQLGYLTSLRDLNVRRNHLED-----L 204 (722)
T ss_pred cC-cceeEEEecCcccc-----CCcccc-cchhHHHhhhhhhhhhh-----chHHhhhHHHHHHHHHhhhhhhh-----C
Confidence 33 48888888888765 222232 33478888888888776 67777888888888888887765 5
Q ss_pred HHHHhcCCCccEEEccCCCCChHHHHHHHHHhhcCCCcCEEECcCCCCCHHHHHHHHHHHhhCCCcCEEecCCCC
Q 007577 408 ADALKQNRTITTIDLGGNNIHSKGASAIARVLKDNSVITSLDLAYNPIGADGAKALSEVLKFHGNINTLKLGWCQ 482 (597)
Q Consensus 408 ~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~ 482 (597)
+..+. .-.|..||+++|+|+. ++-.+.+++.|++|-|.+|++........... ...=.|+|+..-|+
T Consensus 205 p~El~-~LpLi~lDfScNkis~-----iPv~fr~m~~Lq~l~LenNPLqSPPAqIC~kG--kVHIFKyL~~qA~q 271 (722)
T KOG0532|consen 205 PEELC-SLPLIRLDFSCNKISY-----LPVDFRKMRHLQVLQLENNPLQSPPAQICEKG--KVHIFKYLSTQACQ 271 (722)
T ss_pred CHHHh-CCceeeeecccCceee-----cchhhhhhhhheeeeeccCCCCCChHHHHhcc--ceeeeeeecchhcc
Confidence 55555 3458889999998877 33445556888999999988876533322222 12345667776664
No 53
>PLN03150 hypothetical protein; Provisional
Probab=98.00 E-value=8.4e-06 Score=89.53 Aligned_cols=107 Identities=20% Similarity=0.219 Sum_probs=62.8
Q ss_pred cceeeccCCCCChhHHHHHHHHHHcCCCCcEEEccCCCCCcHHHHHHHHHHhcCCCccEEEccCCCCChHHHHHHHHHhh
Q 007577 361 LAVLDIGNNSISAKGAFHVAEYIKNCKSLLWINLYMNDIGDEGAEKIADALKQNRTITTIDLGGNNIHSKGASAIARVLK 440 (597)
Q Consensus 361 L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~ 440 (597)
++.|+|++|.+.. .++..+..+++|+.|+|++|.+... ++..+..+++|+.|+|++|+++.. ++..+.
T Consensus 420 v~~L~L~~n~L~g----~ip~~i~~L~~L~~L~Ls~N~l~g~----iP~~~~~l~~L~~LdLs~N~lsg~----iP~~l~ 487 (623)
T PLN03150 420 IDGLGLDNQGLRG----FIPNDISKLRHLQSINLSGNSIRGN----IPPSLGSITSLEVLDLSYNSFNGS----IPESLG 487 (623)
T ss_pred EEEEECCCCCccc----cCCHHHhCCCCCCEEECCCCcccCc----CChHHhCCCCCCEEECCCCCCCCC----CchHHh
Confidence 5667777776665 3555666677777777777766543 445556666777777777766653 233344
Q ss_pred cCCCcCEEECcCCCCCHHHHHHHHHHHhhCCCcCEEecCCCC
Q 007577 441 DNSVITSLDLAYNPIGADGAKALSEVLKFHGNINTLKLGWCQ 482 (597)
Q Consensus 441 ~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~ 482 (597)
++++|+.|+|++|.++......+... ..++..+++.+|.
T Consensus 488 ~L~~L~~L~Ls~N~l~g~iP~~l~~~---~~~~~~l~~~~N~ 526 (623)
T PLN03150 488 QLTSLRILNLNGNSLSGRVPAALGGR---LLHRASFNFTDNA 526 (623)
T ss_pred cCCCCCEEECcCCcccccCChHHhhc---cccCceEEecCCc
Confidence 55677777777776654433333221 1244556666554
No 54
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=97.90 E-value=1.9e-06 Score=96.79 Aligned_cols=109 Identities=17% Similarity=0.146 Sum_probs=58.9
Q ss_pred cCCCcEEEcCCCCCCHHHHHHH-HHHhccCCCccEEEeccCCCCHHHHHHHHHHhhhCCCccEEEccCCCCChhHHHHHH
Q 007577 161 LRAFSSVDMSGRNFGDEGLFFL-AESLGYNQTAEEVSFAANGITAAGIKAFDGVLQSNIALKTLNLSGNPIGDEGVKCLC 239 (597)
Q Consensus 161 ~~~L~~L~Ls~~~l~~~~~~~l-~~~l~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~ 239 (597)
++.|++|-+.+|.. .+..+ ...|..++.|..|||++|.= ...++..+..+-+|++|+++++.+.. ++
T Consensus 544 ~~~L~tLll~~n~~---~l~~is~~ff~~m~~LrVLDLs~~~~----l~~LP~~I~~Li~LryL~L~~t~I~~-----LP 611 (889)
T KOG4658|consen 544 NPKLRTLLLQRNSD---WLLEISGEFFRSLPLLRVLDLSGNSS----LSKLPSSIGELVHLRYLDLSDTGISH-----LP 611 (889)
T ss_pred CCccceEEEeecch---hhhhcCHHHHhhCcceEEEECCCCCc----cCcCChHHhhhhhhhcccccCCCccc-----cc
Confidence 34566666665531 11111 22355567777777776531 12345555555667777777766653 55
Q ss_pred HHHhcCCCcCEEEecCCCCChHHHHHHHHHHHcCCCccEEEeccCC
Q 007577 240 DILVDNAGVERLQLSSVDLRDEGAKAIAELLKNNSILRVLELNNNM 285 (597)
Q Consensus 240 ~~l~~~~~L~~L~Ls~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~ 285 (597)
.++.++..|.+|++..+.--.. ++.....+.+|++|.+....
T Consensus 612 ~~l~~Lk~L~~Lnl~~~~~l~~----~~~i~~~L~~Lr~L~l~~s~ 653 (889)
T KOG4658|consen 612 SGLGNLKKLIYLNLEVTGRLES----IPGILLELQSLRVLRLPRSA 653 (889)
T ss_pred hHHHHHHhhheecccccccccc----ccchhhhcccccEEEeeccc
Confidence 6666666777777766542221 13333345667777665543
No 55
>PLN03150 hypothetical protein; Provisional
Probab=97.86 E-value=1.9e-05 Score=86.71 Aligned_cols=108 Identities=19% Similarity=0.265 Sum_probs=79.2
Q ss_pred CCCEEEccCCCCChHHHHHHHHhhhcCccccceeeccCCCCChhHHHHHHHHHHcCCCCcEEEccCCCCCcHHHHHHHHH
Q 007577 331 SLRELHLHGNSIGDEGIRALMSGLSSRKGKLAVLDIGNNSISAKGAFHVAEYIKNCKSLLWINLYMNDIGDEGAEKIADA 410 (597)
Q Consensus 331 ~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~ 410 (597)
.++.|+|++|.+...-...+ ..+++|+.|+|++|.+.. .++..+..+++|+.|+|++|.++.. ++..
T Consensus 419 ~v~~L~L~~n~L~g~ip~~i-----~~L~~L~~L~Ls~N~l~g----~iP~~~~~l~~L~~LdLs~N~lsg~----iP~~ 485 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIPNDI-----SKLRHLQSINLSGNSIRG----NIPPSLGSITSLEVLDLSYNSFNGS----IPES 485 (623)
T ss_pred EEEEEECCCCCccccCCHHH-----hCCCCCCEEECCCCcccC----cCChHHhCCCCCCEEECCCCCCCCC----CchH
Confidence 36788888888765422222 345689999999998876 3777788899999999999988765 5666
Q ss_pred HhcCCCccEEEccCCCCChHHHHHHHHHhhcCCCcCEEECcCCC
Q 007577 411 LKQNRTITTIDLGGNNIHSKGASAIARVLKDNSVITSLDLAYNP 454 (597)
Q Consensus 411 l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~ 454 (597)
+..+++|++|+|++|.++......+... ..++..+++.+|.
T Consensus 486 l~~L~~L~~L~Ls~N~l~g~iP~~l~~~---~~~~~~l~~~~N~ 526 (623)
T PLN03150 486 LGQLTSLRILNLNGNSLSGRVPAALGGR---LLHRASFNFTDNA 526 (623)
T ss_pred HhcCCCCCEEECcCCcccccCChHHhhc---cccCceEEecCCc
Confidence 7788899999999998876544444332 2456788888874
No 56
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=97.82 E-value=8.9e-07 Score=65.08 Aligned_cols=14 Identities=29% Similarity=0.342 Sum_probs=6.0
Q ss_pred CCcCEEecCCCCCC
Q 007577 471 GNINTLKLGWCQIG 484 (597)
Q Consensus 471 ~~L~~L~L~~n~i~ 484 (597)
++|++|++++|.++
T Consensus 25 ~~L~~L~l~~N~l~ 38 (61)
T PF13855_consen 25 PNLETLDLSNNNLT 38 (61)
T ss_dssp TTESEEEETSSSES
T ss_pred CCCCEeEccCCccC
Confidence 44444444444443
No 57
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.81 E-value=1.2e-05 Score=67.23 Aligned_cols=94 Identities=21% Similarity=0.222 Sum_probs=54.9
Q ss_pred CCCcCEEecCCCCCChhHHHHHHHHHhcCCCccEEEccCCCCChHHHHHHHHHHhhcCccccEEEccCCCCChHHHHHHH
Q 007577 470 HGNINTLKLGWCQIGASGAEFVADMLRYNNTISILDLRANGLRDEGAKCLAQSFKVVNEALTSIDLAFNEIRDDGAFAIA 549 (597)
Q Consensus 470 ~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~n~i~~~~~~~l~~~l~~~n~~L~~L~Ls~n~i~~~~~~~l~ 549 (597)
...|+.++|++|.+.+...+.-. ..+.++.|++++|.|.+.... ++.+ +.|+.|++++|.+. ..++.+.
T Consensus 52 ~~el~~i~ls~N~fk~fp~kft~----kf~t~t~lNl~~neisdvPeE-~Aam-----~aLr~lNl~~N~l~-~~p~vi~ 120 (177)
T KOG4579|consen 52 GYELTKISLSDNGFKKFPKKFTI----KFPTATTLNLANNEISDVPEE-LAAM-----PALRSLNLRFNPLN-AEPRVIA 120 (177)
T ss_pred CceEEEEecccchhhhCCHHHhh----ccchhhhhhcchhhhhhchHH-Hhhh-----HHhhhcccccCccc-cchHHHH
Confidence 34555566666665544333222 225666777777777665443 5555 56777777777766 3344555
Q ss_pred HHHHhCCCCceeEEEcccCccchhhHHHHHH
Q 007577 550 QALKANEDVAVTSLNLANNFLTKFGQSALTD 580 (597)
Q Consensus 550 ~~l~~~~~~~L~~L~L~~N~i~~~~~~~l~~ 580 (597)
...+ +-.|+..+|.+-.+..+.|..
T Consensus 121 ~L~~------l~~Lds~~na~~eid~dl~~s 145 (177)
T KOG4579|consen 121 PLIK------LDMLDSPENARAEIDVDLFYS 145 (177)
T ss_pred HHHh------HHHhcCCCCccccCcHHHhcc
Confidence 5433 666777777777666665544
No 58
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=97.79 E-value=1.7e-06 Score=63.51 Aligned_cols=59 Identities=25% Similarity=0.349 Sum_probs=26.8
Q ss_pred ccceeeccCCCCChhHHHHHHHHHHcCCCCcEEEccCCCCCcHHHHHHHHHHhcCCCccEEEccCCC
Q 007577 360 KLAVLDIGNNSISAKGAFHVAEYIKNCKSLLWINLYMNDIGDEGAEKIADALKQNRTITTIDLGGNN 426 (597)
Q Consensus 360 ~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~ 426 (597)
+|+.|++++|.++.- ....+..+++|++|++++|.++.. -..++..+++|++|++++|+
T Consensus 2 ~L~~L~l~~n~l~~i----~~~~f~~l~~L~~L~l~~N~l~~i----~~~~f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 2 NLESLDLSNNKLTEI----PPDSFSNLPNLETLDLSNNNLTSI----PPDAFSNLPNLRYLDLSNNN 60 (61)
T ss_dssp TESEEEETSSTESEE----CTTTTTTGTTESEEEETSSSESEE----ETTTTTTSTTESEEEETSSS
T ss_pred cCcEEECCCCCCCcc----CHHHHcCCCCCCEeEccCCccCcc----CHHHHcCCCCCCEEeCcCCc
Confidence 445555555544441 112344455555555555554432 11233444555555555544
No 59
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=97.74 E-value=1.1e-05 Score=90.90 Aligned_cols=108 Identities=25% Similarity=0.278 Sum_probs=60.5
Q ss_pred CCCcCEEEecCCC--CChHHHHHHHHHHHcCCCccEEEeccCCCChhhHHHHHHHHhhCCCccEEEcCCCCCChHHHHHH
Q 007577 245 NAGVERLQLSSVD--LRDEGAKAIAELLKNNSILRVLELNNNMIDYSGFTSLAEALLENSTIRSLHLNGNYGGALGANAL 322 (597)
Q Consensus 245 ~~~L~~L~Ls~~~--l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l 322 (597)
++.|+.|-+..|. +... -..++..++.|+.|||++|.= ...+|..++.+-+|+.|+++++.+. .+
T Consensus 544 ~~~L~tLll~~n~~~l~~i----s~~ff~~m~~LrVLDLs~~~~----l~~LP~~I~~Li~LryL~L~~t~I~-----~L 610 (889)
T KOG4658|consen 544 NPKLRTLLLQRNSDWLLEI----SGEFFRSLPLLRVLDLSGNSS----LSKLPSSIGELVHLRYLDLSDTGIS-----HL 610 (889)
T ss_pred CCccceEEEeecchhhhhc----CHHHHhhCcceEEEECCCCCc----cCcCChHHhhhhhhhcccccCCCcc-----cc
Confidence 4567777666664 2221 122344557777777776532 1455666666777777777777655 33
Q ss_pred HHHhhcCCCCCEEEccCCCCChHHHHHHHHhhhcCccccceeeccCCC
Q 007577 323 AKGLEGNKSLRELHLHGNSIGDEGIRALMSGLSSRKGKLAVLDIGNNS 370 (597)
Q Consensus 323 ~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~Ls~n~ 370 (597)
+..+.+++.|.+|++..+..-..- .+....+++|++|.+....
T Consensus 611 P~~l~~Lk~L~~Lnl~~~~~l~~~-----~~i~~~L~~Lr~L~l~~s~ 653 (889)
T KOG4658|consen 611 PSGLGNLKKLIYLNLEVTGRLESI-----PGILLELQSLRVLRLPRSA 653 (889)
T ss_pred chHHHHHHhhheeccccccccccc-----cchhhhcccccEEEeeccc
Confidence 455666777777777665421110 1111223467777766543
No 60
>KOG4242 consensus Predicted myosin-I-binding protein [Cell motility]
Probab=97.69 E-value=1.7e-05 Score=79.41 Aligned_cols=347 Identities=16% Similarity=0.054 Sum_probs=173.9
Q ss_pred ccCCCccEEEeccCCCCHHHHHHHHHHh--hhCCCccEEEccCCCCChhHHHHHHHHHhcCCCcCEEEecCCCCChHHHH
Q 007577 187 GYNQTAEEVSFAANGITAAGIKAFDGVL--QSNIALKTLNLSGNPIGDEGVKCLCDILVDNAGVERLQLSSVDLRDEGAK 264 (597)
Q Consensus 187 ~~~~~L~~L~L~~~~l~~~~~~~l~~~l--~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~~~l~~~~~~ 264 (597)
..-..++.+.+.-|.+.......+.... ..++.+++++++.|.+.+....+|..- .--++++.|+.++..+.
T Consensus 132 ~~s~~l~~l~l~~cml~pdf~~kl~hs~~~rpnpr~r~~dls~npi~dkvpihl~~p------~~pl~lr~c~lsskfis 205 (553)
T KOG4242|consen 132 SPSAPLPPLGLLPCMLLPDFGQKLRHSTRARPNPRARQHDLSPNPIGDKVPIHLPQP------GNPLSLRVCELSSKFIS 205 (553)
T ss_pred cccccCCccCchhccCchhhcccccchhhcCCcchhhhhccCCCcccccCCccccCC------CCccchhhhhhhhhHHH
Confidence 3345666667766665544333333222 224457778888887777655554431 12266777777766444
Q ss_pred HHHHHHHcCCCccEEEeccCCCChhhHHHHHHHHhhCCCccEEEcCCCCCChHHHHHHHHHh-hcCCCCCEEEccCCCCC
Q 007577 265 AIAELLKNNSILRVLELNNNMIDYSGFTSLAEALLENSTIRSLHLNGNYGGALGANALAKGL-EGNKSLRELHLHGNSIG 343 (597)
Q Consensus 265 ~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l-~~~~~L~~L~Ls~n~i~ 343 (597)
.+..--. -..+.+++++.|...+.. ..+.........++.++.+...+.-... +...+ ..-..+...+++.|...
T Consensus 206 ~l~~qsg-~~~lteldls~n~~Kddi-p~~~n~~a~~~vl~~ld~s~tgirlD~l--~~~l~~g~~tkl~~~kls~ng~s 281 (553)
T KOG4242|consen 206 KLLIQSG-RLWLTELDLSTNGGKDDI-PRTLNKKAGTLVLFKLDRSTTGIRLDLL--TSPLAAGRTTKLTFGKLSRNGTS 281 (553)
T ss_pred Hhhhhhc-cccccccccccCCCCccc-hhHHHHhhhhhhhhcccccccccchhhc--ccccccccccccchhhhccCCCC
Confidence 3331111 124667777777654332 2223333334566666666654432211 00111 12235666666665442
Q ss_pred h----HHHHHHHHhhhcCccccceeeccCCCCChhHHHHHHHHHHcCCCC--cEEEccCCCCCcHHHHHHHHHHhcCCCc
Q 007577 344 D----EGIRALMSGLSSRKGKLAVLDIGNNSISAKGAFHVAEYIKNCKSL--LWINLYMNDIGDEGAEKIADALKQNRTI 417 (597)
Q Consensus 344 ~----~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L--~~L~Ls~n~l~~~~~~~l~~~l~~~~~L 417 (597)
. ++....-+. ++..+++ +|++..+...++....+.-.+...... -.+|+..|...+..+ ..+-..-..+
T Consensus 282 ~skg~Egg~~~k~~-fS~~~sg-hln~~~~~~psE~lks~LLgla~ne~t~g~rldl~~cp~~~a~v---leaci~g~R~ 356 (553)
T KOG4242|consen 282 PSKGEEGGGAEKDT-FSPDPSG-HLNSRPRYTPSEKLKSMLLGLAENEATLGARLDLRRCPLERAEV---LEACIFGQRV 356 (553)
T ss_pred cccccccccccccc-cCcCccc-ccccccccCchhhhhhhhcccccccccccccCChhhccccccch---hhccccceee
Confidence 2 222211111 1233355 666666666655443333222222221 234555554443211 1111112346
Q ss_pred cEEEccCCCCChHHHHHHHHHhhcCCCcCEEECcCCC---CCHHHH--HHHHHHHhhCCCcCEEecCCCCCChhHHHHHH
Q 007577 418 TTIDLGGNNIHSKGASAIARVLKDNSVITSLDLAYNP---IGADGA--KALSEVLKFHGNINTLKLGWCQIGASGAEFVA 492 (597)
Q Consensus 418 ~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~---i~~~~~--~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~ 492 (597)
++|.+.+|++..++-... .+.+.+.++.+++..-. +-+.+. ..+...-....-+..+.++.|..... ...+.
T Consensus 357 q~l~~rdnnldgeg~~vg--k~~~s~s~r~l~agrs~~kqvm~s~~~a~~v~k~~~~~g~l~el~ls~~~lka~-l~s~i 433 (553)
T KOG4242|consen 357 QVLLQRDNNLDGEGGAVG--KRKQSKSGRILKAGRSGDKQVMDSSTEAPPVSKKSRTHGVLAELSLSPGPLKAG-LESAI 433 (553)
T ss_pred eEeecccccccccccccc--ceeeccccccccccccCCceeccccccchhhhhhhcccccccCcccCCCccccc-HHHHH
Confidence 777777776655443332 34444666666665431 111111 11111112234566777777766443 34444
Q ss_pred HHHhcCCCccEEEccCCCCChHHHHHHHHHHhhcCccccEEEccCCCCChHHHHHHHHHH
Q 007577 493 DMLRYNNTISILDLRANGLRDEGAKCLAQSFKVVNEALTSIDLAFNEIRDDGAFAIAQAL 552 (597)
Q Consensus 493 ~~l~~~~~L~~L~l~~n~i~~~~~~~l~~~l~~~n~~L~~L~Ls~n~i~~~~~~~l~~~l 552 (597)
+.+...+.+.+|++++|..++.+...+...++ .|..++....+.|.+++.+..-+....
T Consensus 434 n~l~stqtl~kldisgn~mgd~gap~lpkalq-~n~rlr~ipds~n~p~~~gl~p~~~~~ 492 (553)
T KOG4242|consen 434 NKLLSTQTLAKLDISGNGMGDGGAPPLPKALQ-SNCRLRPIPDSLNLPEDPGLGPRNEER 492 (553)
T ss_pred HhhccCcccccccccCCCcccCCCCcCccccC-CCCccCCCCCCCCCccccccchhhhhc
Confidence 55566677788888888777776666666554 456677777777777777666655443
No 61
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.58 E-value=1.6e-05 Score=74.29 Aligned_cols=114 Identities=25% Similarity=0.230 Sum_probs=74.2
Q ss_pred CCccEEEccCCCCChhHHHHHHHHHhcCCCcCEEEecCCCCChHHHHHHHHHHHcCCCccEEEeccCCCChhhHHHHHHH
Q 007577 218 IALKTLNLSGNPIGDEGVKCLCDILVDNAGVERLQLSSVDLRDEGAKAIAELLKNNSILRVLELNNNMIDYSGFTSLAEA 297 (597)
Q Consensus 218 ~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~ 297 (597)
.+.++|+..++.++|.. ...+++.|+.|.|+-|+|+.. .-+..|+.|++|+|..|.|.+- .. ...
T Consensus 19 ~~vkKLNcwg~~L~DIs------ic~kMp~lEVLsLSvNkIssL------~pl~rCtrLkElYLRkN~I~sl--dE-L~Y 83 (388)
T KOG2123|consen 19 ENVKKLNCWGCGLDDIS------ICEKMPLLEVLSLSVNKISSL------APLQRCTRLKELYLRKNCIESL--DE-LEY 83 (388)
T ss_pred HHhhhhcccCCCccHHH------HHHhcccceeEEeeccccccc------hhHHHHHHHHHHHHHhcccccH--HH-HHH
Confidence 45788888888888763 233468888888888888763 2345568888888888888542 22 235
Q ss_pred HhhCCCccEEEcCCCCCCh-HHHHHHHHHhhcCCCCCEEEccCCCCChHHHH
Q 007577 298 LLENSTIRSLHLNGNYGGA-LGANALAKGLEGNKSLRELHLHGNSIGDEGIR 348 (597)
Q Consensus 298 l~~~~~L~~L~L~~n~i~~-~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~ 348 (597)
+.++++|+.|+|..|.... .+...=...+.-+|+|+.|| +-.++.+.+.
T Consensus 84 LknlpsLr~LWL~ENPCc~~ag~nYR~~VLR~LPnLkKLD--nv~VteeEle 133 (388)
T KOG2123|consen 84 LKNLPSLRTLWLDENPCCGEAGQNYRRKVLRVLPNLKKLD--NVPVTEEELE 133 (388)
T ss_pred HhcCchhhhHhhccCCcccccchhHHHHHHHHcccchhcc--CccccHHHHH
Confidence 6678888888888775322 22223334566777888776 2345554443
No 62
>KOG4242 consensus Predicted myosin-I-binding protein [Cell motility]
Probab=97.54 E-value=5.1e-05 Score=76.11 Aligned_cols=343 Identities=16% Similarity=0.109 Sum_probs=177.9
Q ss_pred CCCcEEEcCCCCCCHHHHHHHHHHhc--cCCCccEEEeccCCCCHHHHHHHHHHhhhCCCccEEEccCCCCChhHHHHHH
Q 007577 162 RAFSSVDMSGRNFGDEGLFFLAESLG--YNQTAEEVSFAANGITAAGIKAFDGVLQSNIALKTLNLSGNPIGDEGVKCLC 239 (597)
Q Consensus 162 ~~L~~L~Ls~~~l~~~~~~~l~~~l~--~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~ 239 (597)
..++.+++.-|-+.......+..... .++.+++++++.|.+.+...-.+..- .--+.++.+.+++..+..++
T Consensus 135 ~~l~~l~l~~cml~pdf~~kl~hs~~~rpnpr~r~~dls~npi~dkvpihl~~p------~~pl~lr~c~lsskfis~l~ 208 (553)
T KOG4242|consen 135 APLPPLGLLPCMLLPDFGQKLRHSTRARPNPRARQHDLSPNPIGDKVPIHLPQP------GNPLSLRVCELSSKFISKLL 208 (553)
T ss_pred ccCCccCchhccCchhhcccccchhhcCCcchhhhhccCCCcccccCCccccCC------CCccchhhhhhhhhHHHHhh
Confidence 34556666666555444433333332 24566777777777665543333321 11166666766666555444
Q ss_pred HHHhcCCCcCEEEecCCCCChHHHHHHHHHHHcCCCccEEEeccCCCChhhHHHHHHHH--hhCCCccEEEcCCCCCCh-
Q 007577 240 DILVDNAGVERLQLSSVDLRDEGAKAIAELLKNNSILRVLELNNNMIDYSGFTSLAEAL--LENSTIRSLHLNGNYGGA- 316 (597)
Q Consensus 240 ~~l~~~~~L~~L~Ls~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l--~~~~~L~~L~L~~n~i~~- 316 (597)
.-- .-..+.+++++.|...+.... +.........+++++.+...+.- ..+...+ ..-++++..+++.|....
T Consensus 209 ~qs-g~~~lteldls~n~~Kddip~-~~n~~a~~~vl~~ld~s~tgirl---D~l~~~l~~g~~tkl~~~kls~ng~s~s 283 (553)
T KOG4242|consen 209 IQS-GRLWLTELDLSTNGGKDDIPR-TLNKKAGTLVLFKLDRSTTGIRL---DLLTSPLAAGRTTKLTFGKLSRNGTSPS 283 (553)
T ss_pred hhh-ccccccccccccCCCCccchh-HHHHhhhhhhhhcccccccccch---hhcccccccccccccchhhhccCCCCcc
Confidence 110 124467777777765443222 22222223446677776655432 1112211 123466666666554321
Q ss_pred ---HHHHHHHHHhhcCCCCCEEEccCCCCChHHHHHHHHhhhcCcccc-ceeeccCCCCChhHHHHHHHHHHcCCCCcEE
Q 007577 317 ---LGANALAKGLEGNKSLRELHLHGNSIGDEGIRALMSGLSSRKGKL-AVLDIGNNSISAKGAFHVAEYIKNCKSLLWI 392 (597)
Q Consensus 317 ---~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L-~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L 392 (597)
++....-..+..-+++ +|++.++...++....+.-++..+-+.+ -.+|+..|...+.. ..+.-..-..+++|
T Consensus 284 kg~Egg~~~k~~fS~~~sg-hln~~~~~~psE~lks~LLgla~ne~t~g~rldl~~cp~~~a~---vleaci~g~R~q~l 359 (553)
T KOG4242|consen 284 KGEEGGGAEKDTFSPDPSG-HLNSRPRYTPSEKLKSMLLGLAENEATLGARLDLRRCPLERAE---VLEACIFGQRVQVL 359 (553)
T ss_pred cccccccccccccCcCccc-ccccccccCchhhhhhhhcccccccccccccCChhhccccccc---hhhccccceeeeEe
Confidence 1122222333344556 7777777776666666655554333222 34666666544421 11111222347777
Q ss_pred EccCCCCCcHHHHHHHHHHhcCCCccEEEccCCCC---ChHHHHH--HHHHhhcCCCcCEEECcCCCCCHHHHHHHHHHH
Q 007577 393 NLYMNDIGDEGAEKIADALKQNRTITTIDLGGNNI---HSKGASA--IARVLKDNSVITSLDLAYNPIGADGAKALSEVL 467 (597)
Q Consensus 393 ~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l---~~~~~~~--l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l 467 (597)
.+..|.+..++-... .+...+.++.+++.+-.- ...+..+ +...-...--+..+.++.|....+ ...+...+
T Consensus 360 ~~rdnnldgeg~~vg--k~~~s~s~r~l~agrs~~kqvm~s~~~a~~v~k~~~~~g~l~el~ls~~~lka~-l~s~in~l 436 (553)
T KOG4242|consen 360 LQRDNNLDGEGGAVG--KRKQSKSGRILKAGRSGDKQVMDSSTEAPPVSKKSRTHGVLAELSLSPGPLKAG-LESAINKL 436 (553)
T ss_pred ecccccccccccccc--ceeeccccccccccccCCceeccccccchhhhhhhcccccccCcccCCCccccc-HHHHHHhh
Confidence 777776665543333 344556677776654321 1111111 111111223466777777766543 33344444
Q ss_pred hhCCCcCEEecCCCCCChhHHHHHHHHHhcCCCccEEEccCCCCChHHHHHHHHH
Q 007577 468 KFHGNINTLKLGWCQIGASGAEFVADMLRYNNTISILDLRANGLRDEGAKCLAQS 522 (597)
Q Consensus 468 ~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~n~i~~~~~~~l~~~ 522 (597)
...+.+.+|++++|..++.+...+...++.+-.++.+..+.|.+++.+...+...
T Consensus 437 ~stqtl~kldisgn~mgd~gap~lpkalq~n~rlr~ipds~n~p~~~gl~p~~~~ 491 (553)
T KOG4242|consen 437 LSTQTLAKLDISGNGMGDGGAPPLPKALQSNCRLRPIPDSLNLPEDPGLGPRNEE 491 (553)
T ss_pred ccCcccccccccCCCcccCCCCcCccccCCCCccCCCCCCCCCccccccchhhhh
Confidence 5567777777777777777666666666667777777777777777665555443
No 63
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.50 E-value=3.5e-05 Score=68.87 Aligned_cols=84 Identities=20% Similarity=0.254 Sum_probs=51.4
Q ss_pred ccceeeccCCCCChhHHHHHHHHHHcCCCCcEEEccCCCCCcHHHHHHHHHHhc-CCCccEEEccCCCCChHHHHHHHHH
Q 007577 360 KLAVLDIGNNSISAKGAFHVAEYIKNCKSLLWINLYMNDIGDEGAEKIADALKQ-NRTITTIDLGGNNIHSKGASAIARV 438 (597)
Q Consensus 360 ~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~-~~~L~~L~L~~n~l~~~~~~~l~~~ 438 (597)
+...+||++|.+... ..+..++.|.+|.|++|.|+.. ...+.. +++|+.|.|.+|.|...+- + .-
T Consensus 43 ~~d~iDLtdNdl~~l------~~lp~l~rL~tLll~nNrIt~I-----~p~L~~~~p~l~~L~LtnNsi~~l~d--l-~p 108 (233)
T KOG1644|consen 43 QFDAIDLTDNDLRKL------DNLPHLPRLHTLLLNNNRITRI-----DPDLDTFLPNLKTLILTNNSIQELGD--L-DP 108 (233)
T ss_pred ccceecccccchhhc------ccCCCccccceEEecCCcceee-----ccchhhhccccceEEecCcchhhhhh--c-ch
Confidence 667777777776652 3456677777777877777652 112221 4667777777776655321 1 11
Q ss_pred hhcCCCcCEEECcCCCCCH
Q 007577 439 LKDNSVITSLDLAYNPIGA 457 (597)
Q Consensus 439 l~~~~~L~~L~Ls~n~i~~ 457 (597)
+..||+|++|.+-+|++..
T Consensus 109 La~~p~L~~Ltll~Npv~~ 127 (233)
T KOG1644|consen 109 LASCPKLEYLTLLGNPVEH 127 (233)
T ss_pred hccCCccceeeecCCchhc
Confidence 4456777777777776644
No 64
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.48 E-value=4.2e-05 Score=64.01 Aligned_cols=36 Identities=31% Similarity=0.329 Sum_probs=16.3
Q ss_pred CccEEEccCCCCChhHHHHHHHHHhcCCCcCEEEecCCCCC
Q 007577 219 ALKTLNLSGNPIGDEGVKCLCDILVDNAGVERLQLSSVDLR 259 (597)
Q Consensus 219 ~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~~~l~ 259 (597)
.++.|++++|.+.+.... ++ .++.|+.|++++|.+.
T Consensus 78 t~t~lNl~~neisdvPeE-~A----am~aLr~lNl~~N~l~ 113 (177)
T KOG4579|consen 78 TATTLNLANNEISDVPEE-LA----AMPALRSLNLRFNPLN 113 (177)
T ss_pred hhhhhhcchhhhhhchHH-Hh----hhHHhhhcccccCccc
Confidence 455555555555443222 22 2245555555555444
No 65
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.43 E-value=5.6e-05 Score=70.81 Aligned_cols=105 Identities=21% Similarity=0.180 Sum_probs=77.2
Q ss_pred CCCccEEEeccCCCCHHHHHHHHHHhhhCCCccEEEccCCCCChhHHHHHHHHHhcCCCcCEEEecCCCCChHHHHHHHH
Q 007577 189 NQTAEEVSFAANGITAAGIKAFDGVLQSNIALKTLNLSGNPIGDEGVKCLCDILVDNAGVERLQLSSVDLRDEGAKAIAE 268 (597)
Q Consensus 189 ~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~~~l~~~~~~~l~~ 268 (597)
+.+.++|++.+|.++++ .++..++.|+.|.||-|+|+.. .-+..|++|++|+|..|.|.+.. .+ .
T Consensus 18 l~~vkKLNcwg~~L~DI------sic~kMp~lEVLsLSvNkIssL------~pl~rCtrLkElYLRkN~I~sld--EL-~ 82 (388)
T KOG2123|consen 18 LENVKKLNCWGCGLDDI------SICEKMPLLEVLSLSVNKISSL------APLQRCTRLKELYLRKNCIESLD--EL-E 82 (388)
T ss_pred HHHhhhhcccCCCccHH------HHHHhcccceeEEeeccccccc------hhHHHHHHHHHHHHHhcccccHH--HH-H
Confidence 56888999999999876 3345678899999999999753 34456799999999999988742 22 4
Q ss_pred HHHcCCCccEEEeccCCCChh-hHHHHHHHHhhCCCccEEE
Q 007577 269 LLKNNSILRVLELNNNMIDYS-GFTSLAEALLENSTIRSLH 308 (597)
Q Consensus 269 ~l~~~~~L~~L~Ls~n~i~~~-~~~~l~~~l~~~~~L~~L~ 308 (597)
.++++++|+.|.|..|.-... +-..=...+..+++|+.|+
T Consensus 83 YLknlpsLr~LWL~ENPCc~~ag~nYR~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 83 YLKNLPSLRTLWLDENPCCGEAGQNYRRKVLRVLPNLKKLD 123 (388)
T ss_pred HHhcCchhhhHhhccCCcccccchhHHHHHHHHcccchhcc
Confidence 577889999999998854332 2222334455688898876
No 66
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.41 E-value=0.00013 Score=49.21 Aligned_cols=37 Identities=35% Similarity=0.439 Sum_probs=18.3
Q ss_pred ccceeeccCCCCChhHHHHHHHHHHcCCCCcEEEccCCCCCc
Q 007577 360 KLAVLDIGNNSISAKGAFHVAEYIKNCKSLLWINLYMNDIGD 401 (597)
Q Consensus 360 ~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~ 401 (597)
+|++|++++|+|++ ++..+.++++|+.|++++|+|++
T Consensus 2 ~L~~L~l~~N~i~~-----l~~~l~~l~~L~~L~l~~N~i~~ 38 (44)
T PF12799_consen 2 NLEELDLSNNQITD-----LPPELSNLPNLETLNLSNNPISD 38 (44)
T ss_dssp T-SEEEETSSS-SS-----HGGHGTTCTTSSEEEETSSCCSB
T ss_pred cceEEEccCCCCcc-----cCchHhCCCCCCEEEecCCCCCC
Confidence 45555555555554 34345555555555555555543
No 67
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.36 E-value=0.00019 Score=48.31 Aligned_cols=37 Identities=27% Similarity=0.371 Sum_probs=17.5
Q ss_pred CCcEEEccCCCCCcHHHHHHHHHHhcCCCccEEEccCCCCCh
Q 007577 388 SLLWINLYMNDIGDEGAEKIADALKQNRTITTIDLGGNNIHS 429 (597)
Q Consensus 388 ~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~ 429 (597)
+|++|++++|+|++ ++..+.++++|+.|++++|+|++
T Consensus 2 ~L~~L~l~~N~i~~-----l~~~l~~l~~L~~L~l~~N~i~~ 38 (44)
T PF12799_consen 2 NLEELDLSNNQITD-----LPPELSNLPNLETLNLSNNPISD 38 (44)
T ss_dssp T-SEEEETSSS-SS-----HGGHGTTCTTSSEEEETSSCCSB
T ss_pred cceEEEccCCCCcc-----cCchHhCCCCCCEEEecCCCCCC
Confidence 45555555555554 33334445555555555555543
No 68
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.25 E-value=9.5e-05 Score=66.18 Aligned_cols=67 Identities=27% Similarity=0.311 Sum_probs=27.8
Q ss_pred hhcCCCCCEEEccCCCCChHHHHHHHHhhhcCccccceeeccCCCCChhHHHHHHHHHHcCCCCcEEEccCCCCC
Q 007577 326 LEGNKSLRELHLHGNSIGDEGIRALMSGLSSRKGKLAVLDIGNNSISAKGAFHVAEYIKNCKSLLWINLYMNDIG 400 (597)
Q Consensus 326 l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~ 400 (597)
|..++.|..|.+++|+|+.. ...+....++|+.|.|.+|.|..-+- ...+..||+|++|.+-+|+++
T Consensus 60 lp~l~rL~tLll~nNrIt~I-----~p~L~~~~p~l~~L~LtnNsi~~l~d---l~pLa~~p~L~~Ltll~Npv~ 126 (233)
T KOG1644|consen 60 LPHLPRLHTLLLNNNRITRI-----DPDLDTFLPNLKTLILTNNSIQELGD---LDPLASCPKLEYLTLLGNPVE 126 (233)
T ss_pred CCCccccceEEecCCcceee-----ccchhhhccccceEEecCcchhhhhh---cchhccCCccceeeecCCchh
Confidence 33444555555555555431 11111222345555555544433100 012344555555555555443
No 69
>KOG3735 consensus Tropomodulin and leiomodulin [Cytoskeleton]
Probab=97.03 E-value=0.0018 Score=62.55 Aligned_cols=120 Identities=27% Similarity=0.241 Sum_probs=87.2
Q ss_pred CCCCcEEEccCC-CCCcHHHHHHHHHHhcCCCccEEEccCCCCChHHHHHHHHHhhcCCCcCEEECcCCCCCHHHHHHHH
Q 007577 386 CKSLLWINLYMN-DIGDEGAEKIADALKQNRTITTIDLGGNNIHSKGASAIARVLKDNSVITSLDLAYNPIGADGAKALS 464 (597)
Q Consensus 386 ~~~L~~L~Ls~n-~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~ 464 (597)
-+.++..+++++ .|....+..+..++..++..+.+.+.+.+..+....+++..+..|+.|++|++++|.|+..|+..+.
T Consensus 197 d~~l~evnlnn~~~ip~e~lk~~~eal~~nt~vk~Fsla~tr~~d~vA~a~a~ml~~n~sl~slnvesnFItg~gi~a~~ 276 (353)
T KOG3735|consen 197 DTGLTEVNLNNIRRIPIETLKQFSEALKNNTHVKKFSLANTRSSDPVAFAIAEMLKENKSLTSLNVESNFITGLGIMALL 276 (353)
T ss_pred CCCceeeeccccccCCHHHHHHHHHHHhcCchhhhhhhhcccCCchhHHHHHHHHhhcchhhheeccccccccHHHHHHH
Confidence 356777777776 6777777778888888888888888888888877777888888888888888888888888888888
Q ss_pred HHHhhCCCcCEEecCCCC--CChhHHHHHHHHHhcCCCccEEE
Q 007577 465 EVLKFHGNINTLKLGWCQ--IGASGAEFVADMLRYNNTISILD 505 (597)
Q Consensus 465 ~~l~~~~~L~~L~L~~n~--i~~~~~~~l~~~l~~~~~L~~L~ 505 (597)
.++..+.+|..+.+.+-. ++......++.++..+.+|-..-
T Consensus 277 ~al~~n~tl~el~~dnqrq~lg~~vemeia~~leen~sllk~g 319 (353)
T KOG3735|consen 277 RALQSNKSLTELKNDNQRQVLGNAVEMEIALELEENASLLKFG 319 (353)
T ss_pred HHHhccchhhHhhhhhHHhhcccHHHHHHHHHHHhcccccccc
Confidence 777777777777664432 34444455666666555554443
No 70
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.02 E-value=0.00032 Score=62.92 Aligned_cols=82 Identities=21% Similarity=0.285 Sum_probs=45.7
Q ss_pred CccEEEccCCCCChHHHHHHHHHhhcCCCcCEEECcCC-CCCHHHHHHHHHHHhhCCCcCEEecCCCC-CChhHHHHHHH
Q 007577 416 TITTIDLGGNNIHSKGASAIARVLKDNSVITSLDLAYN-PIGADGAKALSEVLKFHGNINTLKLGWCQ-IGASGAEFVAD 493 (597)
Q Consensus 416 ~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n-~i~~~~~~~l~~~l~~~~~L~~L~L~~n~-i~~~~~~~l~~ 493 (597)
.++.+|-+++.|..+|...+... +.|+.|.+.+| .+.|.++..+... .++|+.|+|++|. |++.+...+..
T Consensus 102 ~IeaVDAsds~I~~eGle~L~~l----~~i~~l~l~~ck~~dD~~L~~l~~~---~~~L~~L~lsgC~rIT~~GL~~L~~ 174 (221)
T KOG3864|consen 102 KIEAVDASDSSIMYEGLEHLRDL----RSIKSLSLANCKYFDDWCLERLGGL---APSLQDLDLSGCPRITDGGLACLLK 174 (221)
T ss_pred eEEEEecCCchHHHHHHHHHhcc----chhhhheeccccchhhHHHHHhccc---ccchheeeccCCCeechhHHHHHHH
Confidence 45666666666666665554433 66666666666 3555555555442 3566666666553 55555554443
Q ss_pred HHhcCCCccEEEccC
Q 007577 494 MLRYNNTISILDLRA 508 (597)
Q Consensus 494 ~l~~~~~L~~L~l~~ 508 (597)
. ++|+.|.|.+
T Consensus 175 l----knLr~L~l~~ 185 (221)
T KOG3864|consen 175 L----KNLRRLHLYD 185 (221)
T ss_pred h----hhhHHHHhcC
Confidence 3 5555555544
No 71
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.93 E-value=0.00038 Score=62.48 Aligned_cols=84 Identities=23% Similarity=0.332 Sum_probs=57.7
Q ss_pred CCcCEEECcCCCCCHHHHHHHHHHHhhCCCcCEEecCCCC-CChhHHHHHHHHHhcCCCccEEEccCC-CCChHHHHHHH
Q 007577 443 SVITSLDLAYNPIGADGAKALSEVLKFHGNINTLKLGWCQ-IGASGAEFVADMLRYNNTISILDLRAN-GLRDEGAKCLA 520 (597)
Q Consensus 443 ~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~-i~~~~~~~l~~~l~~~~~L~~L~l~~n-~i~~~~~~~l~ 520 (597)
-.++.+|-++..|..+|...+... +.|+.|.+.+|. +.+.+.+.+... .++|+.|+|++| +|++.|+..+.
T Consensus 101 ~~IeaVDAsds~I~~eGle~L~~l----~~i~~l~l~~ck~~dD~~L~~l~~~---~~~L~~L~lsgC~rIT~~GL~~L~ 173 (221)
T KOG3864|consen 101 VKIEAVDASDSSIMYEGLEHLRDL----RSIKSLSLANCKYFDDWCLERLGGL---APSLQDLDLSGCPRITDGGLACLL 173 (221)
T ss_pred ceEEEEecCCchHHHHHHHHHhcc----chhhhheeccccchhhHHHHHhccc---ccchheeeccCCCeechhHHHHHH
Confidence 356777777777777776655543 677777777775 666666666653 367777777777 77777777776
Q ss_pred HHHhhcCccccEEEccCC
Q 007577 521 QSFKVVNEALTSIDLAFN 538 (597)
Q Consensus 521 ~~l~~~n~~L~~L~Ls~n 538 (597)
.. ++|+.|.|.+=
T Consensus 174 ~l-----knLr~L~l~~l 186 (221)
T KOG3864|consen 174 KL-----KNLRRLHLYDL 186 (221)
T ss_pred Hh-----hhhHHHHhcCc
Confidence 65 66777776654
No 72
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.38 E-value=0.001 Score=62.26 Aligned_cols=82 Identities=24% Similarity=0.296 Sum_probs=38.9
Q ss_pred ccceeeccCCCCChhHHHHHHHHHHcCCCCcEEEccCCCCCc-HHHHHHHHHHhcCCCccEEEccCCCCChHHHHHHHHH
Q 007577 360 KLAVLDIGNNSISAKGAFHVAEYIKNCKSLLWINLYMNDIGD-EGAEKIADALKQNRTITTIDLGGNNIHSKGASAIARV 438 (597)
Q Consensus 360 ~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~-~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~ 438 (597)
.|+.|++.++.++.. ..+..+++|++|.++.|.... .++..+.. .+++|++|++++|+|.. +..+..
T Consensus 44 ~le~ls~~n~gltt~------~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e---~~P~l~~l~ls~Nki~~--lstl~p- 111 (260)
T KOG2739|consen 44 ELELLSVINVGLTTL------TNFPKLPKLKKLELSDNYRRVSGGLEVLAE---KAPNLKVLNLSGNKIKD--LSTLRP- 111 (260)
T ss_pred chhhhhhhccceeec------ccCCCcchhhhhcccCCcccccccceehhh---hCCceeEEeecCCcccc--ccccch-
Confidence 566666666655551 233455666666666662221 12222222 23566666666665553 112211
Q ss_pred hhcCCCcCEEECcCC
Q 007577 439 LKDNSVITSLDLAYN 453 (597)
Q Consensus 439 l~~~~~L~~L~Ls~n 453 (597)
++..++|..|++.+|
T Consensus 112 l~~l~nL~~Ldl~n~ 126 (260)
T KOG2739|consen 112 LKELENLKSLDLFNC 126 (260)
T ss_pred hhhhcchhhhhcccC
Confidence 223355555555555
No 73
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=96.30 E-value=0.0063 Score=36.38 Aligned_cols=24 Identities=42% Similarity=0.637 Sum_probs=12.3
Q ss_pred ccccEEEccCCCCChHHHHHHHHH
Q 007577 528 EALTSIDLAFNEIRDDGAFAIAQA 551 (597)
Q Consensus 528 ~~L~~L~Ls~n~i~~~~~~~l~~~ 551 (597)
++|++|||++|.|++.|...+++.
T Consensus 2 ~~L~~LdL~~N~i~~~G~~~L~~~ 25 (28)
T smart00368 2 PSLRELDLSNNKLGDEGARALAEA 25 (28)
T ss_pred CccCEEECCCCCCCHHHHHHHHHH
Confidence 345555555555555555555444
No 74
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.24 E-value=0.002 Score=60.44 Aligned_cols=61 Identities=25% Similarity=0.334 Sum_probs=31.2
Q ss_pred cccceeeccCC--CCChhHHHHHHHHHHcCCCCcEEEccCCCCCcHHHHHHHHHHhcCCCccEEEccCCC
Q 007577 359 GKLAVLDIGNN--SISAKGAFHVAEYIKNCKSLLWINLYMNDIGDEGAEKIADALKQNRTITTIDLGGNN 426 (597)
Q Consensus 359 ~~L~~L~Ls~n--~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~ 426 (597)
++|+.|.++.| .++. .+......+|+|++|++++|+|.+ +..+ ..++.+.+|..|++.+|.
T Consensus 65 p~LkkL~lsdn~~~~~~----~l~vl~e~~P~l~~l~ls~Nki~~--lstl-~pl~~l~nL~~Ldl~n~~ 127 (260)
T KOG2739|consen 65 PKLKKLELSDNYRRVSG----GLEVLAEKAPNLKVLNLSGNKIKD--LSTL-RPLKELENLKSLDLFNCS 127 (260)
T ss_pred chhhhhcccCCcccccc----cceehhhhCCceeEEeecCCcccc--cccc-chhhhhcchhhhhcccCC
Confidence 45666666666 3332 133334445666666666666554 1112 123344556666666653
No 75
>KOG3735 consensus Tropomodulin and leiomodulin [Cytoskeleton]
Probab=96.08 E-value=0.021 Score=55.39 Aligned_cols=111 Identities=19% Similarity=0.206 Sum_probs=72.9
Q ss_pred CCCccEEEccCC-CCChHHHHHHHHHhhcCCCcCEEECcCCCCCHHHHHHHHHHHhhCCCcCEEecCCCCCChhHHHHHH
Q 007577 414 NRTITTIDLGGN-NIHSKGASAIARVLKDNSVITSLDLAYNPIGADGAKALSEVLKFHGNINTLKLGWCQIGASGAEFVA 492 (597)
Q Consensus 414 ~~~L~~L~L~~n-~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~ 492 (597)
-+.++..+++++ +|.......+...+..+...+...+.+...++.....+...+..|..|++|++.+|.|+..+...+.
T Consensus 197 d~~l~evnlnn~~~ip~e~lk~~~eal~~nt~vk~Fsla~tr~~d~vA~a~a~ml~~n~sl~slnvesnFItg~gi~a~~ 276 (353)
T KOG3735|consen 197 DTGLTEVNLNNIRRIPIETLKQFSEALKNNTHVKKFSLANTRSSDPVAFAIAEMLKENKSLTSLNVESNFITGLGIMALL 276 (353)
T ss_pred CCCceeeeccccccCCHHHHHHHHHHHhcCchhhhhhhhcccCCchhHHHHHHHHhhcchhhheeccccccccHHHHHHH
Confidence 356777777666 5666667777777777777777777776666666666667777777777777777777777777777
Q ss_pred HHHhcCCCccEEEccCC--CCChHHHHHHHHHHh
Q 007577 493 DMLRYNNTISILDLRAN--GLRDEGAKCLAQSFK 524 (597)
Q Consensus 493 ~~l~~~~~L~~L~l~~n--~i~~~~~~~l~~~l~ 524 (597)
.++..+.+|.++-+.+- .++...-..++.++.
T Consensus 277 ~al~~n~tl~el~~dnqrq~lg~~vemeia~~le 310 (353)
T KOG3735|consen 277 RALQSNKSLTELKNDNQRQVLGNAVEMEIALELE 310 (353)
T ss_pred HHHhccchhhHhhhhhHHhhcccHHHHHHHHHHH
Confidence 77777777766655432 344444444444443
No 76
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=95.99 E-value=0.011 Score=35.27 Aligned_cols=25 Identities=44% Similarity=0.668 Sum_probs=20.0
Q ss_pred CCccEEEccCCCCChHHHHHHHHHH
Q 007577 499 NTISILDLRANGLRDEGAKCLAQSF 523 (597)
Q Consensus 499 ~~L~~L~l~~n~i~~~~~~~l~~~l 523 (597)
++|++|||++|.|++.|...+++.+
T Consensus 2 ~~L~~LdL~~N~i~~~G~~~L~~~L 26 (28)
T smart00368 2 PSLRELDLSNNKLGDEGARALAEAL 26 (28)
T ss_pred CccCEEECCCCCCCHHHHHHHHHHh
Confidence 5788888888888888888887764
No 77
>PRK15386 type III secretion protein GogB; Provisional
Probab=95.93 E-value=0.0042 Score=63.19 Aligned_cols=138 Identities=17% Similarity=0.232 Sum_probs=77.6
Q ss_pred hccCCCccEEEeccCCCCHHHHHHHHHHhhhCCCccEEEccCC-CCChhHHHHHHHHHhcCCCcCEEEecCC-CCChHHH
Q 007577 186 LGYNQTAEEVSFAANGITAAGIKAFDGVLQSNIALKTLNLSGN-PIGDEGVKCLCDILVDNAGVERLQLSSV-DLRDEGA 263 (597)
Q Consensus 186 l~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n-~l~~~~~~~l~~~l~~~~~L~~L~Ls~~-~l~~~~~ 263 (597)
+..+.+++.|++++|.++.. +. +. .+|++|+++++ .++. +++.+ .++|++|++++| .+..
T Consensus 48 ~~~~~~l~~L~Is~c~L~sL-----P~-LP--~sLtsL~Lsnc~nLts-----LP~~L--P~nLe~L~Ls~Cs~L~s--- 109 (426)
T PRK15386 48 IEEARASGRLYIKDCDIESL-----PV-LP--NELTEITIENCNNLTT-----LPGSI--PEGLEKLTVCHCPEISG--- 109 (426)
T ss_pred HHHhcCCCEEEeCCCCCccc-----CC-CC--CCCcEEEccCCCCccc-----CCchh--hhhhhheEccCcccccc---
Confidence 45568899999999976532 21 11 36999999874 3322 22222 267899999988 4432
Q ss_pred HHHHHHHHcCCCccEEEeccCCCChhhHHHHHHHHhhCCCccEEEcCCCCCChHHHHHHHHHhhcCCCCCEEEccCCCCC
Q 007577 264 KAIAELLKNNSILRVLELNNNMIDYSGFTSLAEALLENSTIRSLHLNGNYGGALGANALAKGLEGNKSLRELHLHGNSIG 343 (597)
Q Consensus 264 ~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~ 343 (597)
++ ++|+.|++..+.... +..++ ++|+.|.+.++.... ...++..+ .++|++|++++|...
T Consensus 110 --LP------~sLe~L~L~~n~~~~--L~~LP------ssLk~L~I~~~n~~~--~~~lp~~L--PsSLk~L~Is~c~~i 169 (426)
T PRK15386 110 --LP------ESVRSLEIKGSATDS--IKNVP------NGLTSLSINSYNPEN--QARIDNLI--SPSLKTLSLTGCSNI 169 (426)
T ss_pred --cc------cccceEEeCCCCCcc--cccCc------chHhheecccccccc--cccccccc--CCcccEEEecCCCcc
Confidence 22 468888887765432 12222 467777775432110 00000001 147888888887643
Q ss_pred hHHHHHHHHhhhcCccccceeeccCC
Q 007577 344 DEGIRALMSGLSSRKGKLAVLDIGNN 369 (597)
Q Consensus 344 ~~~~~~l~~~l~~~~~~L~~L~Ls~n 369 (597)
. ++..+. .+|+.|+++.+
T Consensus 170 ~-----LP~~LP---~SLk~L~ls~n 187 (426)
T PRK15386 170 I-----LPEKLP---ESLQSITLHIE 187 (426)
T ss_pred c-----Cccccc---ccCcEEEeccc
Confidence 2 111111 36888888765
No 78
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=95.85 E-value=0.0058 Score=35.01 Aligned_cols=19 Identities=47% Similarity=0.754 Sum_probs=7.3
Q ss_pred ccEEEccCCCCChHHHHHH
Q 007577 530 LTSIDLAFNEIRDDGAFAI 548 (597)
Q Consensus 530 L~~L~Ls~n~i~~~~~~~l 548 (597)
|++|+|++|+|++.++..|
T Consensus 4 L~~L~l~~n~i~~~g~~~l 22 (24)
T PF13516_consen 4 LETLDLSNNQITDEGASAL 22 (24)
T ss_dssp -SEEE-TSSBEHHHHHHHH
T ss_pred CCEEEccCCcCCHHHHHHh
Confidence 4444444444444444433
No 79
>PRK15386 type III secretion protein GogB; Provisional
Probab=95.69 E-value=0.0097 Score=60.63 Aligned_cols=139 Identities=17% Similarity=0.216 Sum_probs=84.0
Q ss_pred HHHhcCCCcEEEcCCCCCCHHHHHHHHHHhccCCCccEEEeccCCCCHHHHHHHHHHhhhCCCccEEEccCC-CCChhHH
Q 007577 157 FAKELRAFSSVDMSGRNFGDEGLFFLAESLGYNQTAEEVSFAANGITAAGIKAFDGVLQSNIALKTLNLSGN-PIGDEGV 235 (597)
Q Consensus 157 ~~~~~~~L~~L~Ls~~~l~~~~~~~l~~~l~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n-~l~~~~~ 235 (597)
-+..+++++.|++++|.+... +. -..+|++|.+++|.- +..++..+. ++|++|++++| .+..
T Consensus 47 r~~~~~~l~~L~Is~c~L~sL-----P~---LP~sLtsL~Lsnc~n----LtsLP~~LP--~nLe~L~Ls~Cs~L~s--- 109 (426)
T PRK15386 47 QIEEARASGRLYIKDCDIESL-----PV---LPNELTEITIENCNN----LTTLPGSIP--EGLEKLTVCHCPEISG--- 109 (426)
T ss_pred HHHHhcCCCEEEeCCCCCccc-----CC---CCCCCcEEEccCCCC----cccCCchhh--hhhhheEccCcccccc---
Confidence 355679999999999976642 31 135799999998742 112232232 47999999988 4432
Q ss_pred HHHHHHHhcCCCcCEEEecCCCCChHHHHHHHHHHHcCCCccEEEeccCC-CChhhHHHHHHHHhhCCCccEEEcCCCCC
Q 007577 236 KCLCDILVDNAGVERLQLSSVDLRDEGAKAIAELLKNNSILRVLELNNNM-IDYSGFTSLAEALLENSTIRSLHLNGNYG 314 (597)
Q Consensus 236 ~~l~~~l~~~~~L~~L~Ls~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~-i~~~~~~~l~~~l~~~~~L~~L~L~~n~i 314 (597)
++ .+|+.|++..+..... ..++ ++|+.|.+.+++ ... ..++.. -.++|++|++++|..
T Consensus 110 --LP------~sLe~L~L~~n~~~~L--~~LP------ssLk~L~I~~~n~~~~---~~lp~~--LPsSLk~L~Is~c~~ 168 (426)
T PRK15386 110 --LP------ESVRSLEIKGSATDSI--KNVP------NGLTSLSINSYNPENQ---ARIDNL--ISPSLKTLSLTGCSN 168 (426)
T ss_pred --cc------cccceEEeCCCCCccc--ccCc------chHhheeccccccccc---cccccc--cCCcccEEEecCCCc
Confidence 32 6799999987765431 1222 357788775432 111 001110 136899999988874
Q ss_pred ChHHHHHHHHHhhcCCCCCEEEccCC
Q 007577 315 GALGANALAKGLEGNKSLRELHLHGN 340 (597)
Q Consensus 315 ~~~~~~~l~~~l~~~~~L~~L~Ls~n 340 (597)
...+ ..+. .+|+.|+++.+
T Consensus 169 i~LP-----~~LP--~SLk~L~ls~n 187 (426)
T PRK15386 169 IILP-----EKLP--ESLQSITLHIE 187 (426)
T ss_pred ccCc-----cccc--ccCcEEEeccc
Confidence 3211 1122 47888888765
No 80
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=95.64 E-value=0.0076 Score=34.50 Aligned_cols=22 Identities=45% Similarity=0.665 Sum_probs=11.4
Q ss_pred CCccEEEccCCCCChHHHHHHH
Q 007577 499 NTISILDLRANGLRDEGAKCLA 520 (597)
Q Consensus 499 ~~L~~L~l~~n~i~~~~~~~l~ 520 (597)
++|++|+|++|.|++.++..++
T Consensus 2 ~~L~~L~l~~n~i~~~g~~~l~ 23 (24)
T PF13516_consen 2 PNLETLDLSNNQITDEGASALA 23 (24)
T ss_dssp TT-SEEE-TSSBEHHHHHHHHH
T ss_pred CCCCEEEccCCcCCHHHHHHhC
Confidence 4555666666666655555543
No 81
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=93.65 E-value=0.076 Score=31.00 Aligned_cols=20 Identities=30% Similarity=0.491 Sum_probs=8.4
Q ss_pred CCccEEEccCC-CCChHHHHH
Q 007577 499 NTISILDLRAN-GLRDEGAKC 518 (597)
Q Consensus 499 ~~L~~L~l~~n-~i~~~~~~~ 518 (597)
++|++|++++| .|+|.++..
T Consensus 2 ~~L~~L~l~~C~~itD~gl~~ 22 (26)
T smart00367 2 PNLRELDLSGCTNITDEGLQA 22 (26)
T ss_pred CCCCEeCCCCCCCcCHHHHHH
Confidence 34444444444 344444433
No 82
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=92.32 E-value=0.16 Score=29.63 Aligned_cols=20 Identities=30% Similarity=0.330 Sum_probs=9.1
Q ss_pred CCCcEEEccCC-CCCcHHHHH
Q 007577 387 KSLLWINLYMN-DIGDEGAEK 406 (597)
Q Consensus 387 ~~L~~L~Ls~n-~l~~~~~~~ 406 (597)
++|++|+|++| .++|.++..
T Consensus 2 ~~L~~L~l~~C~~itD~gl~~ 22 (26)
T smart00367 2 PNLRELDLSGCTNITDEGLQA 22 (26)
T ss_pred CCCCEeCCCCCCCcCHHHHHH
Confidence 34444444444 344444433
No 83
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=86.51 E-value=1.9 Score=45.29 Aligned_cols=14 Identities=21% Similarity=0.280 Sum_probs=6.8
Q ss_pred CCCCCEEEccCCCC
Q 007577 329 NKSLRELHLHGNSI 342 (597)
Q Consensus 329 ~~~L~~L~Ls~n~i 342 (597)
.+.+..+.|++|++
T Consensus 217 ~p~i~sl~lsnNrL 230 (585)
T KOG3763|consen 217 FPEILSLSLSNNRL 230 (585)
T ss_pred Ccceeeeecccchh
Confidence 34445555555544
No 84
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=85.47 E-value=0.55 Score=24.23 Aligned_cols=11 Identities=36% Similarity=0.661 Sum_probs=3.6
Q ss_pred ccEEEccCCCC
Q 007577 530 LTSIDLAFNEI 540 (597)
Q Consensus 530 L~~L~Ls~n~i 540 (597)
|++|+|++|++
T Consensus 3 L~~L~l~~n~L 13 (17)
T PF13504_consen 3 LRTLDLSNNRL 13 (17)
T ss_dssp -SEEEETSS--
T ss_pred cCEEECCCCCC
Confidence 44444444443
No 85
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=84.83 E-value=0.21 Score=27.75 Aligned_cols=15 Identities=33% Similarity=0.406 Sum_probs=9.7
Q ss_pred eeEEEcccCccchhh
Q 007577 560 VTSLNLANNFLTKFG 574 (597)
Q Consensus 560 L~~L~L~~N~i~~~~ 574 (597)
|++|||++|.|+.+.
T Consensus 2 L~~Ldls~n~l~~ip 16 (22)
T PF00560_consen 2 LEYLDLSGNNLTSIP 16 (22)
T ss_dssp ESEEEETSSEESEEG
T ss_pred ccEEECCCCcCEeCC
Confidence 666777777666544
No 86
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=81.04 E-value=2.4 Score=44.55 Aligned_cols=30 Identities=17% Similarity=0.187 Sum_probs=15.0
Q ss_pred hhHHHHHHHHHHHHhc--CCCcEEEcCCCCCC
Q 007577 146 LFRESKQTLNEFAKEL--RAFSSVDMSGRNFG 175 (597)
Q Consensus 146 ~~~~~~~~l~~~~~~~--~~L~~L~Ls~~~l~ 175 (597)
+.....+.+..++... +.=+.|||.+-+.+
T Consensus 157 lkpe~IE~l~~v~~kRyd~~~~~LDL~nl~~D 188 (585)
T KOG3763|consen 157 LKPEEIEILKLVMNKRYDVSQQALDLQNLRFD 188 (585)
T ss_pred cCHHHHHHHHHHHhccccHHHhhhhhhccccC
Confidence 3455555555554432 33445676655444
No 87
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=76.79 E-value=0.2 Score=42.68 Aligned_cols=13 Identities=23% Similarity=0.460 Sum_probs=5.8
Q ss_pred hhCCCccEEEccC
Q 007577 215 QSNIALKTLNLSG 227 (597)
Q Consensus 215 ~~~~~L~~L~Ls~ 227 (597)
..+++|+.+++.+
T Consensus 32 ~~~~~l~~i~~~~ 44 (129)
T PF13306_consen 32 SNCTSLKSINFPN 44 (129)
T ss_dssp TT-TT-SEEEESS
T ss_pred ccccccccccccc
Confidence 3444556665554
No 88
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=75.34 E-value=0.14 Score=43.56 Aligned_cols=13 Identities=15% Similarity=0.404 Sum_probs=5.6
Q ss_pred cCCCcCEEECcCC
Q 007577 441 DNSVITSLDLAYN 453 (597)
Q Consensus 441 ~~~~L~~L~Ls~n 453 (597)
.|++|+.+++..+
T Consensus 33 ~~~~l~~i~~~~~ 45 (129)
T PF13306_consen 33 NCTSLKSINFPNN 45 (129)
T ss_dssp T-TT-SEEEESST
T ss_pred ccccccccccccc
Confidence 3455555555543
No 89
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=74.42 E-value=2 Score=24.81 Aligned_cols=20 Identities=30% Similarity=0.474 Sum_probs=13.1
Q ss_pred ceeEEEcccCccchhhHHHH
Q 007577 559 AVTSLNLANNFLTKFGQSAL 578 (597)
Q Consensus 559 ~L~~L~L~~N~i~~~~~~~l 578 (597)
+|+.|+|++|.|+.+...+|
T Consensus 3 ~L~~L~L~~N~l~~lp~~~f 22 (26)
T smart00369 3 NLRELDLSNNQLSSLPPGAF 22 (26)
T ss_pred CCCEEECCCCcCCcCCHHHc
Confidence 36677777777776665554
No 90
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=74.42 E-value=2 Score=24.81 Aligned_cols=20 Identities=30% Similarity=0.474 Sum_probs=13.1
Q ss_pred ceeEEEcccCccchhhHHHH
Q 007577 559 AVTSLNLANNFLTKFGQSAL 578 (597)
Q Consensus 559 ~L~~L~L~~N~i~~~~~~~l 578 (597)
+|+.|+|++|.|+.+...+|
T Consensus 3 ~L~~L~L~~N~l~~lp~~~f 22 (26)
T smart00370 3 NLRELDLSNNQLSSLPPGAF 22 (26)
T ss_pred CCCEEECCCCcCCcCCHHHc
Confidence 36677777777776665554
No 91
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=58.01 E-value=8.2 Score=22.49 Aligned_cols=13 Identities=38% Similarity=0.654 Sum_probs=8.0
Q ss_pred cccEEEccCCCCC
Q 007577 529 ALTSIDLAFNEIR 541 (597)
Q Consensus 529 ~L~~L~Ls~n~i~ 541 (597)
+|+.|++++|+|+
T Consensus 3 ~L~~L~L~~NkI~ 15 (26)
T smart00365 3 NLEELDLSQNKIK 15 (26)
T ss_pred ccCEEECCCCccc
Confidence 4666666666664
No 92
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=39.39 E-value=1.4 Score=41.11 Aligned_cols=87 Identities=16% Similarity=0.139 Sum_probs=54.4
Q ss_pred hcCCCCCEEEccCCCCChHHHHHHHHhhhcCccccceeeccCCCCChhHHHHHHHHHHcCCCCcEEEccCCCCCcHHHHH
Q 007577 327 EGNKSLRELHLHGNSIGDEGIRALMSGLSSRKGKLAVLDIGNNSISAKGAFHVAEYIKNCKSLLWINLYMNDIGDEGAEK 406 (597)
Q Consensus 327 ~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~ 406 (597)
...+..+.||++.|++-..+- .+ +....+..||++.|.+.- ++.-++....+.++++..|..+.
T Consensus 39 ~~~kr~tvld~~s~r~vn~~~-----n~-s~~t~~~rl~~sknq~~~-----~~~d~~q~~e~~~~~~~~n~~~~----- 102 (326)
T KOG0473|consen 39 ASFKRVTVLDLSSNRLVNLGK-----NF-SILTRLVRLDLSKNQIKF-----LPKDAKQQRETVNAASHKNNHSQ----- 102 (326)
T ss_pred hccceeeeehhhhhHHHhhcc-----ch-HHHHHHHHHhccHhhHhh-----ChhhHHHHHHHHHHHhhccchhh-----
Confidence 345677788888776533211 11 111257777777665543 55556666677777777776654
Q ss_pred HHHHHhcCCCccEEEccCCCCCh
Q 007577 407 IADALKQNRTITTIDLGGNNIHS 429 (597)
Q Consensus 407 l~~~l~~~~~L~~L~L~~n~l~~ 429 (597)
.+...++.+.++++++.+|.++.
T Consensus 103 ~p~s~~k~~~~k~~e~k~~~~~~ 125 (326)
T KOG0473|consen 103 QPKSQKKEPHPKKNEQKKTEFFR 125 (326)
T ss_pred CCccccccCCcchhhhccCcchH
Confidence 45566667888888888887654
No 93
>PF03382 DUF285: Mycoplasma protein of unknown function, DUF285; InterPro: IPR005046 This is a family proteins of unknown function. Many contain a tandem peptide repeat sequence of 25 or 26 residues, found in predicted surface proteins (often lipoproteins) from Listeria monocytogenes, Listeria innocua, Enterococcus faecalis (Streptococcus faecalis), Lactobacillus plantarum, Mycoplasma mycoides, Helicobacter hepaticus, and other species.
Probab=36.55 E-value=15 Score=30.83 Aligned_cols=17 Identities=18% Similarity=0.339 Sum_probs=7.6
Q ss_pred HHHHhhcCCCcCEEECcC
Q 007577 435 IARVLKDNSVITSLDLAY 452 (597)
Q Consensus 435 l~~~l~~~~~L~~L~Ls~ 452 (597)
+...+..|+.|.. +++.
T Consensus 53 m~~mF~~~~~l~~-dls~ 69 (120)
T PF03382_consen 53 MSGMFAGCSSLNQ-DLSN 69 (120)
T ss_pred HHHHHhhhhhcCC-Cccc
Confidence 3444444444444 4433
No 94
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=35.04 E-value=0.92 Score=42.21 Aligned_cols=59 Identities=14% Similarity=0.085 Sum_probs=26.9
Q ss_pred CCccEEEeccCCCChhhHHHHHHHHhhCCCccEEEcCCCCCChHHHHHHHHHhhcCCCCCEEEccCCCC
Q 007577 274 SILRVLELNNNMIDYSGFTSLAEALLENSTIRSLHLNGNYGGALGANALAKGLEGNKSLRELHLHGNSI 342 (597)
Q Consensus 274 ~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i 342 (597)
..|..|+++.|++ ..++.-+.+...+.++++..|..+. .+..+...+.++.+++-++.+
T Consensus 65 t~~~rl~~sknq~-----~~~~~d~~q~~e~~~~~~~~n~~~~-----~p~s~~k~~~~k~~e~k~~~~ 123 (326)
T KOG0473|consen 65 TRLVRLDLSKNQI-----KFLPKDAKQQRETVNAASHKNNHSQ-----QPKSQKKEPHPKKNEQKKTEF 123 (326)
T ss_pred HHHHHHhccHhhH-----hhChhhHHHHHHHHHHHhhccchhh-----CCccccccCCcchhhhccCcc
Confidence 3355555555544 3333333333444444444443322 223344555566666555554
No 95
>smart00364 LRR_BAC Leucine-rich repeats, bacterial type.
Probab=33.88 E-value=26 Score=20.46 Aligned_cols=13 Identities=15% Similarity=0.470 Sum_probs=7.7
Q ss_pred cccEEEccCCCCC
Q 007577 529 ALTSIDLAFNEIR 541 (597)
Q Consensus 529 ~L~~L~Ls~n~i~ 541 (597)
+|+.|++++|+++
T Consensus 3 ~L~~L~vs~N~Lt 15 (26)
T smart00364 3 SLKELNVSNNQLT 15 (26)
T ss_pred ccceeecCCCccc
Confidence 4566666666655
No 96
>PF07723 LRR_2: Leucine Rich Repeat; InterPro: IPR013101 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. This entry includes some LRRs that fail to be detected by IPR001611 from INTERPRO [, ].
Probab=25.16 E-value=52 Score=19.07 Aligned_cols=11 Identities=27% Similarity=0.335 Sum_probs=4.7
Q ss_pred cCEEecCCCCC
Q 007577 473 INTLKLGWCQI 483 (597)
Q Consensus 473 L~~L~L~~n~i 483 (597)
||+|+|....+
T Consensus 2 LKtL~L~~v~f 12 (26)
T PF07723_consen 2 LKTLHLDSVVF 12 (26)
T ss_pred CeEEEeeEEEE
Confidence 44444444433
Done!