Query 007577
Match_columns 597
No_of_seqs 472 out of 4111
Neff 9.7
Searched_HMMs 29240
Date Mon Mar 25 05:14:58 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007577.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/007577hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1z7x_W Ribonuclease inhibitor; 100.0 3.5E-45 1.2E-49 389.1 44.5 413 163-580 4-420 (461)
2 1z7x_W Ribonuclease inhibitor; 100.0 1.2E-42 4.2E-47 369.5 49.5 428 153-583 19-452 (461)
3 2ca6_A RAN GTPase-activating p 100.0 1.9E-31 6.7E-36 276.2 28.8 293 202-495 16-329 (386)
4 2ca6_A RAN GTPase-activating p 100.0 3.2E-31 1.1E-35 274.7 30.3 298 226-523 12-329 (386)
5 3ogk_B Coronatine-insensitive 100.0 2.3E-31 7.9E-36 291.7 27.0 390 152-580 102-535 (592)
6 2p1m_B Transport inhibitor res 100.0 3.1E-30 1.1E-34 282.9 33.0 384 153-579 96-527 (594)
7 3goz_A Leucine-rich repeat-con 100.0 2.9E-30 1E-34 264.8 22.1 277 218-522 22-307 (362)
8 3goz_A Leucine-rich repeat-con 100.0 4.9E-30 1.7E-34 263.1 22.8 299 251-554 3-310 (362)
9 3ogk_B Coronatine-insensitive 100.0 7.7E-29 2.6E-33 271.7 31.0 389 156-580 67-510 (592)
10 2p1m_B Transport inhibitor res 100.0 1.2E-27 4E-32 262.4 31.0 372 154-568 122-541 (594)
11 4fmz_A Internalin; leucine ric 100.0 2.6E-28 8.8E-33 249.0 15.8 305 160-541 42-346 (347)
12 4fmz_A Internalin; leucine ric 100.0 3.7E-28 1.3E-32 247.8 16.7 305 189-572 43-347 (347)
13 1o6v_A Internalin A; bacterial 99.9 5.7E-28 2E-32 256.5 14.5 328 158-574 64-391 (466)
14 3t6q_A CD180 antigen; protein- 99.9 5.9E-31 2E-35 289.3 -9.1 87 469-571 474-560 (606)
15 3rgz_A Protein brassinosteroid 99.9 9E-32 3.1E-36 303.0 -16.7 259 274-572 394-718 (768)
16 3rgz_A Protein brassinosteroid 99.9 1E-31 3.5E-36 302.6 -19.3 373 155-581 240-703 (768)
17 1o6v_A Internalin A; bacterial 99.9 1.3E-27 4.4E-32 253.8 13.3 327 160-575 44-370 (466)
18 2z7x_B TOLL-like receptor 1, v 99.9 5.1E-29 1.7E-33 268.7 1.2 367 157-573 40-483 (520)
19 3v47_A TOLL-like receptor 5B a 99.9 1.9E-29 6.6E-34 267.3 -3.6 368 162-574 30-411 (455)
20 2z81_A CD282 antigen, TOLL-lik 99.9 2.6E-28 8.8E-33 265.0 4.3 188 360-573 311-512 (549)
21 3t6q_A CD180 antigen; protein- 99.9 8.8E-30 3E-34 280.0 -7.5 294 247-583 255-548 (606)
22 3vq2_A TLR4, TOLL-like recepto 99.9 4.4E-30 1.5E-34 282.4 -10.1 118 157-289 51-168 (606)
23 4eco_A Uncharacterized protein 99.9 5.2E-30 1.8E-34 282.2 -9.7 364 157-581 201-610 (636)
24 4ecn_A Leucine-rich repeat pro 99.9 2.2E-29 7.4E-34 282.4 -5.3 371 157-582 443-851 (876)
25 4eco_A Uncharacterized protein 99.9 6.1E-30 2.1E-34 281.7 -11.4 344 182-576 198-584 (636)
26 2z81_A CD282 antigen, TOLL-lik 99.9 1.3E-28 4.3E-33 267.4 -1.3 318 158-513 46-424 (549)
27 3v47_A TOLL-like receptor 5B a 99.9 8.1E-29 2.8E-33 262.5 -3.7 366 166-580 14-393 (455)
28 4ecn_A Leucine-rich repeat pro 99.9 2.5E-28 8.7E-33 273.7 -4.1 349 160-572 489-865 (876)
29 2z7x_B TOLL-like receptor 1, v 99.9 5.1E-28 1.8E-32 260.8 -2.1 366 162-578 21-464 (520)
30 3a79_B TLR6, VLRB.59, TOLL-lik 99.9 2.3E-28 7.8E-33 266.0 -6.6 162 384-572 350-511 (562)
31 3vq2_A TLR4, TOLL-like recepto 99.9 8.5E-29 2.9E-33 272.1 -10.4 93 158-261 76-168 (606)
32 2z63_A TOLL-like receptor 4, v 99.9 5.4E-29 1.8E-33 271.6 -12.4 364 158-573 48-533 (570)
33 1ziw_A TOLL-like receptor 3; i 99.9 4E-28 1.4E-32 270.4 -5.9 363 161-571 221-622 (680)
34 3o6n_A APL1; leucine-rich repe 99.9 5.9E-27 2E-31 242.9 2.8 316 161-548 44-359 (390)
35 1ziw_A TOLL-like receptor 3; i 99.9 2.7E-28 9.2E-33 271.8 -8.0 166 301-482 194-364 (680)
36 3o6n_A APL1; leucine-rich repe 99.9 1E-26 3.5E-31 241.1 1.7 316 189-578 44-359 (390)
37 2id5_A Lingo-1, leucine rich r 99.9 2E-27 6.8E-32 253.3 -8.3 301 162-511 32-332 (477)
38 3a79_B TLR6, VLRB.59, TOLL-lik 99.9 5.5E-27 1.9E-31 255.0 -5.7 367 162-578 52-493 (562)
39 3j0a_A TOLL-like receptor 5; m 99.9 2.9E-27 9.9E-32 269.0 -8.6 310 159-512 45-394 (844)
40 3oja_B Anopheles plasmodium-re 99.9 5.2E-26 1.8E-30 248.9 1.6 314 161-546 50-363 (597)
41 3j0a_A TOLL-like receptor 5; m 99.9 7.8E-29 2.7E-33 282.0 -21.8 246 158-429 69-376 (844)
42 2id5_A Lingo-1, leucine rich r 99.9 3.4E-27 1.2E-31 251.5 -8.4 321 165-542 14-334 (477)
43 3bz5_A Internalin-J, INLJ; leu 99.9 1E-24 3.5E-29 229.9 8.6 302 159-542 39-353 (457)
44 3oja_B Anopheles plasmodium-re 99.9 8.8E-25 3E-29 239.1 7.0 297 156-519 69-365 (597)
45 3un9_A NLR family member X1; l 99.9 1E-21 3.5E-26 200.8 24.2 211 330-543 72-285 (372)
46 2z63_A TOLL-like receptor 4, v 99.9 1.4E-26 4.8E-31 252.5 -12.9 188 327-543 344-533 (570)
47 3bz5_A Internalin-J, INLJ; leu 99.9 9.7E-25 3.3E-29 230.1 0.8 316 158-572 60-388 (457)
48 3un9_A NLR family member X1; l 99.9 8.6E-21 3E-25 193.9 25.7 211 161-374 71-285 (372)
49 1xku_A Decorin; proteoglycan, 99.9 1.1E-24 3.7E-29 220.5 -3.7 296 163-509 32-329 (330)
50 2z80_A TOLL-like receptor 2, v 99.9 1.3E-23 4.6E-28 214.5 1.2 260 189-484 30-290 (353)
51 4g8a_A TOLL-like receptor 4; l 99.9 7.4E-25 2.5E-29 241.9 -9.1 161 162-342 52-213 (635)
52 2ast_B S-phase kinase-associat 99.9 4.3E-21 1.5E-25 194.5 19.4 255 246-543 47-308 (336)
53 1xku_A Decorin; proteoglycan, 99.9 1.2E-24 4E-29 220.2 -8.4 246 191-485 32-277 (330)
54 2ast_B S-phase kinase-associat 99.9 1.1E-20 3.7E-25 191.5 20.4 210 273-514 92-308 (336)
55 2z80_A TOLL-like receptor 2, v 99.8 7.9E-23 2.7E-27 208.8 1.4 262 190-486 52-316 (353)
56 2ft3_A Biglycan; proteoglycan, 99.8 2E-24 6.7E-29 218.7 -11.1 126 164-315 35-160 (332)
57 2ft3_A Biglycan; proteoglycan, 99.8 9.4E-25 3.2E-29 221.1 -14.2 293 191-538 34-330 (332)
58 1jl5_A Outer protein YOPM; leu 99.8 7E-23 2.4E-27 215.7 -1.6 54 472-542 318-371 (454)
59 1jl5_A Outer protein YOPM; leu 99.8 3.5E-21 1.2E-25 202.8 5.8 315 161-577 110-435 (454)
60 3g06_A SSPH2 (leucine-rich rep 99.8 1E-20 3.6E-25 205.4 7.2 285 162-539 40-326 (622)
61 3g06_A SSPH2 (leucine-rich rep 99.8 1.3E-20 4.3E-25 204.7 6.8 285 190-568 40-325 (622)
62 3o53_A Protein LRIM1, AGAP0063 99.8 8.3E-22 2.8E-26 197.9 -2.4 173 300-512 78-250 (317)
63 3o53_A Protein LRIM1, AGAP0063 99.8 6.9E-22 2.4E-26 198.5 -3.1 14 217-230 57-70 (317)
64 1ogq_A PGIP-2, polygalacturona 99.8 2.5E-23 8.5E-28 208.6 -14.1 250 162-482 50-302 (313)
65 1ogq_A PGIP-2, polygalacturona 99.8 5.2E-23 1.8E-27 206.3 -12.4 208 243-484 73-281 (313)
66 4g8a_A TOLL-like receptor 4; l 99.8 9.3E-22 3.2E-26 217.0 -4.3 372 158-571 72-580 (635)
67 1wwl_A Monocyte differentiatio 99.8 1.2E-20 4.1E-25 189.0 -1.6 90 216-314 93-185 (312)
68 4glp_A Monocyte differentiatio 99.8 1.9E-20 6.4E-25 187.5 -0.4 161 301-485 144-308 (310)
69 1wwl_A Monocyte differentiatio 99.8 2.4E-21 8.3E-26 194.1 -7.2 193 189-401 42-242 (312)
70 4fcg_A Uncharacterized protein 99.8 9E-21 3.1E-25 191.1 -4.3 248 202-510 63-312 (328)
71 1io0_A Tropomodulin; LRR prote 99.8 1.8E-17 6.2E-22 152.0 18.1 136 379-514 28-166 (185)
72 2z66_A Variable lymphocyte rec 99.8 5E-22 1.7E-26 198.6 -13.7 265 248-553 9-274 (306)
73 4fcg_A Uncharacterized protein 99.8 2.1E-20 7.1E-25 188.5 -2.1 223 161-425 80-311 (328)
74 4glp_A Monocyte differentiatio 99.8 1.6E-19 5.4E-24 180.7 4.0 239 191-457 65-308 (310)
75 1io0_A Tropomodulin; LRR prote 99.8 4.4E-17 1.5E-21 149.4 19.7 137 406-543 27-166 (185)
76 3zyj_A Leucine-rich repeat-con 99.7 1.3E-20 4.4E-25 198.4 -6.7 247 219-511 44-291 (440)
77 3oja_A Leucine-rich immune mol 99.7 6E-20 2E-24 195.2 -2.6 237 160-450 32-269 (487)
78 3zyi_A Leucine-rich repeat-con 99.7 4.2E-20 1.4E-24 195.1 -4.7 226 246-510 75-301 (452)
79 3zyj_A Leucine-rich repeat-con 99.7 2.3E-20 7.8E-25 196.4 -7.3 260 247-553 44-305 (440)
80 1ozn_A Reticulon 4 receptor; N 99.7 3.1E-20 1.1E-24 183.5 -6.0 113 383-511 125-237 (285)
81 3zyi_A Leucine-rich repeat-con 99.7 2.5E-20 8.7E-25 196.8 -7.1 247 248-541 56-303 (452)
82 2z66_A Variable lymphocyte rec 99.7 1.1E-20 3.9E-25 188.7 -9.4 38 190-231 28-65 (306)
83 1ozn_A Reticulon 4 receptor; N 99.7 5.3E-20 1.8E-24 181.9 -5.1 218 302-553 32-251 (285)
84 3oja_A Leucine-rich immune mol 99.7 7.1E-19 2.4E-23 186.9 2.0 218 189-456 33-250 (487)
85 1h6u_A Internalin H; cell adhe 99.7 1.1E-17 3.9E-22 166.9 8.9 169 246-457 41-209 (308)
86 1h6u_A Internalin H; cell adhe 99.7 7.5E-18 2.6E-22 168.2 6.3 191 274-513 41-231 (308)
87 1pgv_A TMD-1, tropomodulin TMD 99.7 1.6E-15 5.5E-20 137.6 17.9 135 434-571 32-170 (197)
88 1pgv_A TMD-1, tropomodulin TMD 99.7 1.7E-15 5.7E-20 137.5 16.5 131 380-510 34-168 (197)
89 1p9a_G Platelet glycoprotein I 99.6 7.4E-18 2.5E-22 166.6 -1.3 176 219-427 32-207 (290)
90 2z62_A TOLL-like receptor 4, v 99.6 7.6E-18 2.6E-22 165.5 -1.3 43 384-429 121-163 (276)
91 2z62_A TOLL-like receptor 4, v 99.6 3E-18 1E-22 168.4 -4.3 209 303-542 29-238 (276)
92 1p9a_G Platelet glycoprotein I 99.6 2.3E-17 7.7E-22 163.1 0.4 217 160-416 8-225 (290)
93 3rfs_A Internalin B, repeat mo 99.6 1.3E-17 4.3E-22 163.5 -1.5 13 190-202 41-53 (272)
94 3rfs_A Internalin B, repeat mo 99.6 2.5E-17 8.4E-22 161.4 -0.3 42 384-429 154-195 (272)
95 2o6q_A Variable lymphocyte rec 99.6 1.4E-17 4.7E-22 163.1 -5.3 112 384-511 106-217 (270)
96 2o6q_A Variable lymphocyte rec 99.6 3.4E-17 1.1E-21 160.3 -3.3 134 301-455 84-217 (270)
97 1h6t_A Internalin B; cell adhe 99.6 2.4E-15 8.3E-20 148.6 7.6 59 274-344 46-104 (291)
98 1h6t_A Internalin B; cell adhe 99.6 2E-15 6.9E-20 149.2 5.8 14 190-203 46-59 (291)
99 4ezg_A Putative uncharacterize 99.5 5.1E-15 1.8E-19 137.3 5.7 14 442-455 180-193 (197)
100 4ezg_A Putative uncharacterize 99.5 3.7E-15 1.3E-19 138.3 4.2 39 440-484 156-194 (197)
101 1m9s_A Internalin B; cell inva 99.5 1.7E-14 6E-19 156.3 6.7 170 274-486 43-212 (605)
102 3m19_A Variable lymphocyte rec 99.5 2.7E-16 9.3E-21 152.0 -6.9 158 360-542 36-193 (251)
103 3m19_A Variable lymphocyte rec 99.5 2.1E-15 7.2E-20 145.8 -0.9 16 328-343 105-120 (251)
104 1m9s_A Internalin B; cell inva 99.5 1.3E-14 4.5E-19 157.2 5.2 169 189-400 42-210 (605)
105 2xwt_C Thyrotropin receptor; s 99.5 5.7E-16 1.9E-20 148.6 -5.2 179 191-401 32-219 (239)
106 2xwt_C Thyrotropin receptor; s 99.5 6.3E-16 2.1E-20 148.3 -5.5 35 247-285 32-66 (239)
107 3cvr_A Invasion plasmid antige 99.4 7.2E-15 2.5E-19 157.6 0.2 188 190-438 59-253 (571)
108 3cvr_A Invasion plasmid antige 99.4 1.5E-14 5.2E-19 155.1 2.2 195 161-409 58-252 (571)
109 1xeu_A Internalin C; cellular 99.4 9.1E-15 3.1E-19 142.1 -0.2 124 360-514 42-165 (263)
110 2ra8_A Uncharacterized protein 99.4 1.9E-13 6.6E-18 138.2 8.2 157 325-493 167-329 (362)
111 1xeu_A Internalin C; cellular 99.4 2.2E-14 7.4E-19 139.5 0.9 125 300-456 61-185 (263)
112 2ra8_A Uncharacterized protein 99.4 5.5E-13 1.9E-17 134.9 10.7 221 219-482 108-341 (362)
113 1dce_A Protein (RAB geranylger 99.4 2.1E-15 7.2E-20 162.5 -8.1 106 388-514 442-548 (567)
114 1dce_A Protein (RAB geranylger 99.3 2.8E-14 9.5E-19 153.8 -7.3 126 331-478 442-567 (567)
115 2xot_A Amphoterin-induced prot 99.3 1.4E-13 4.9E-18 140.3 -2.4 105 221-344 21-126 (361)
116 2xot_A Amphoterin-induced prot 99.3 7E-14 2.4E-18 142.7 -5.2 63 359-429 64-126 (361)
117 2je0_A Acidic leucine-rich nuc 99.2 4.5E-12 1.5E-16 111.6 5.8 132 359-507 17-148 (149)
118 4b8c_D Glucose-repressible alc 99.2 5.1E-13 1.7E-17 148.4 -1.1 154 246-430 173-331 (727)
119 3e6j_A Variable lymphocyte rec 99.2 7.2E-13 2.5E-17 125.9 0.1 63 385-456 110-172 (229)
120 2ell_A Acidic leucine-rich nuc 99.2 1.6E-12 5.6E-17 117.0 1.3 136 360-512 25-160 (168)
121 3e6j_A Variable lymphocyte rec 99.2 5.7E-13 2E-17 126.6 -1.8 88 384-484 85-172 (229)
122 2je0_A Acidic leucine-rich nuc 99.2 5.3E-12 1.8E-16 111.1 4.6 131 386-537 16-149 (149)
123 2o6s_A Variable lymphocyte rec 99.2 5.3E-13 1.8E-17 124.8 -2.8 15 328-342 74-88 (208)
124 2o6s_A Variable lymphocyte rec 99.2 8.9E-13 3E-17 123.3 -1.3 133 302-455 28-160 (208)
125 4b8c_D Glucose-repressible alc 99.2 1.3E-12 4.5E-17 145.1 -0.5 192 162-397 173-369 (727)
126 2v70_A SLIT-2, SLIT homolog 2 99.2 8.5E-13 2.9E-17 124.5 -1.7 14 442-455 152-165 (220)
127 2v9t_B SLIT homolog 2 protein 99.2 1.2E-13 4.1E-18 130.4 -7.7 151 333-511 14-164 (220)
128 2v9t_B SLIT homolog 2 protein 99.2 4.7E-13 1.6E-17 126.3 -3.8 42 384-429 101-142 (220)
129 2ell_A Acidic leucine-rich nuc 99.2 2.6E-12 8.9E-17 115.7 0.8 135 386-541 23-160 (168)
130 2v70_A SLIT-2, SLIT homolog 2 99.2 7.5E-13 2.6E-17 124.9 -3.0 133 360-511 33-165 (220)
131 1ds9_A Outer arm dynein; leuci 99.2 1E-12 3.5E-17 121.8 -2.7 110 297-427 43-152 (198)
132 1ds9_A Outer arm dynein; leuci 99.2 5.6E-13 1.9E-17 123.6 -5.0 111 325-456 43-153 (198)
133 1a9n_A U2A', U2A'; complex (nu 99.1 1.1E-11 3.6E-16 112.6 2.2 111 388-512 43-153 (176)
134 1a9n_A U2A', U2A'; complex (nu 99.1 1.6E-11 5.6E-16 111.3 2.4 83 301-400 18-101 (176)
135 4ay9_X Follicle-stimulating ho 99.1 2E-13 7E-18 138.6 -12.8 105 193-316 12-118 (350)
136 3sb4_A Hypothetical leucine ri 99.1 1.3E-12 4.4E-17 131.5 -7.3 15 217-231 48-62 (329)
137 4ay9_X Follicle-stimulating ho 99.0 3.6E-13 1.2E-17 136.8 -14.1 239 249-538 12-256 (350)
138 3sb4_A Hypothetical leucine ri 99.0 1.3E-11 4.5E-16 124.1 -5.1 124 161-311 24-157 (329)
139 3e4g_A ATP synthase subunit S, 98.9 5.8E-10 2E-14 99.1 4.2 93 415-515 61-156 (176)
140 3e4g_A ATP synthase subunit S, 98.9 6E-10 2.1E-14 99.0 3.4 92 388-487 62-156 (176)
141 1w8a_A SLIT protein; signaling 98.9 4.7E-11 1.6E-15 109.9 -4.4 61 360-429 30-92 (192)
142 1w8a_A SLIT protein; signaling 98.9 9.4E-11 3.2E-15 107.9 -2.8 109 331-455 30-138 (192)
143 2wfh_A SLIT homolog 2 protein 98.9 5.3E-11 1.8E-15 109.6 -4.6 61 360-429 32-92 (193)
144 2wfh_A SLIT homolog 2 protein 98.8 1.3E-10 4.6E-15 106.9 -2.6 107 388-511 32-138 (193)
145 2o6r_A Variable lymphocyte rec 98.8 6.2E-10 2.1E-14 100.9 -0.3 14 442-455 123-136 (177)
146 2o6r_A Variable lymphocyte rec 98.7 1E-09 3.5E-14 99.4 0.0 90 384-485 49-138 (177)
147 3g39_A Variable lymphocyte rec 98.6 7E-09 2.4E-13 93.2 0.2 17 327-343 51-67 (170)
148 3g39_A Variable lymphocyte rec 98.5 6.8E-09 2.3E-13 93.2 -0.8 85 360-456 31-115 (170)
149 2r9u_A Variable lymphocyte rec 98.4 2.9E-08 1E-12 89.4 0.8 65 327-400 54-118 (174)
150 2r9u_A Variable lymphocyte rec 98.4 1.8E-08 6.1E-13 90.8 -1.6 85 360-456 34-118 (174)
151 4fdw_A Leucine rich hypothetic 98.2 5.9E-09 2E-13 107.2 -11.0 271 245-571 112-383 (401)
152 4fdw_A Leucine rich hypothetic 98.2 9.7E-09 3.3E-13 105.6 -10.0 268 161-482 112-381 (401)
153 3rw6_A Nuclear RNA export fact 98.2 3.9E-06 1.4E-10 80.2 8.7 41 359-401 170-210 (267)
154 2ifg_A High affinity nerve gro 98.0 5.7E-07 2E-11 90.7 -0.8 103 334-456 12-116 (347)
155 2ifg_A High affinity nerve gro 98.0 1.5E-06 5E-11 87.7 1.6 80 250-343 12-93 (347)
156 4fs7_A Uncharacterized protein 97.9 2E-08 6.7E-13 103.5 -14.7 14 186-199 90-103 (394)
157 4fs7_A Uncharacterized protein 97.8 2.3E-08 7.8E-13 103.0 -15.5 308 185-568 66-376 (394)
158 3rw6_A Nuclear RNA export fact 97.8 3.6E-05 1.2E-09 73.5 7.7 88 384-477 167-257 (267)
159 4gt6_A Cell surface protein; l 97.3 7.1E-06 2.4E-10 84.2 -5.1 312 163-540 65-390 (394)
160 4gt6_A Cell surface protein; l 97.1 3.1E-05 1.1E-09 79.3 -2.4 297 157-511 82-390 (394)
161 4h09_A Hypothetical leucine ri 81.2 0.048 1.7E-06 54.9 -6.0 15 185-199 64-78 (379)
162 4h09_A Hypothetical leucine ri 80.5 0.25 8.7E-06 49.5 -0.9 130 299-453 214-343 (379)
163 3rfe_A Platelet glycoprotein I 79.5 1 3.5E-05 37.3 2.7 36 303-342 32-67 (130)
164 3rfe_A Platelet glycoprotein I 78.4 0.58 2E-05 38.8 0.8 35 472-510 32-66 (130)
No 1
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=100.00 E-value=3.5e-45 Score=389.14 Aligned_cols=413 Identities=26% Similarity=0.379 Sum_probs=206.2
Q ss_pred CCcEEEcCCCCCCHHHHHHHHHHhccCCCccEEEeccCCCCHHHHHHHHHHhhhCCCccEEEccCCCCChhHHHHHHHHH
Q 007577 163 AFSSVDMSGRNFGDEGLFFLAESLGYNQTAEEVSFAANGITAAGIKAFDGVLQSNIALKTLNLSGNPIGDEGVKCLCDIL 242 (597)
Q Consensus 163 ~L~~L~Ls~~~l~~~~~~~l~~~l~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l 242 (597)
++++|+|+++.+++..+..+ +..+++|++|++++|.+++.+...++..+..+++|++|++++|.+++.+...+...+
T Consensus 4 ~l~~L~Ls~~~l~~~~~~~~---~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l 80 (461)
T 1z7x_W 4 DIQSLDIQCEELSDARWAEL---LPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGL 80 (461)
T ss_dssp EEEEEEEESCCCCHHHHHHH---HHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTT
T ss_pred cceehhhhhcccCchhHHHH---HhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHH
Confidence 34555555555554442221 222345555555555555555555555555555555555555555544444444332
Q ss_pred hcCC-CcCEEEecCCCCChHHHHHHHHHHHcCCCccEEEeccCCCChhhHHHHHHHHhh-CCCccEEEcCCCCCChHHHH
Q 007577 243 VDNA-GVERLQLSSVDLRDEGAKAIAELLKNNSILRVLELNNNMIDYSGFTSLAEALLE-NSTIRSLHLNGNYGGALGAN 320 (597)
Q Consensus 243 ~~~~-~L~~L~Ls~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~-~~~L~~L~L~~n~i~~~~~~ 320 (597)
.... +|++|++++|.+++.++..++..+..+++|++|++++|.+++.+...+...+.. .++|++|++++|.++..+..
T Consensus 81 ~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~ 160 (461)
T 1z7x_W 81 QTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCE 160 (461)
T ss_dssp CSTTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHH
T ss_pred hhCCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHH
Confidence 2211 455555555555555444555555555555555555555554444444444332 33455555555555555444
Q ss_pred HHHHHhhcCCCCCEEEccCCCCChHHHHHHHHhhhcCccccceeeccCCCCChhHHHHHHHHHHcCCCCcEEEccCCCCC
Q 007577 321 ALAKGLEGNKSLRELHLHGNSIGDEGIRALMSGLSSRKGKLAVLDIGNNSISAKGAFHVAEYIKNCKSLLWINLYMNDIG 400 (597)
Q Consensus 321 ~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~ 400 (597)
.++..+..+++|++|++++|.+++.+...+...+....++|+.|++++|.+++.+...++..+..+++|++|++++|.++
T Consensus 161 ~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~ 240 (461)
T 1z7x_W 161 PLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLG 240 (461)
T ss_dssp HHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCH
T ss_pred HHHHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCC
Confidence 44455555555555555555555554444444444334455555555555555544445555555555555555555555
Q ss_pred cHHHHHHHHHHh-cCCCccEEEccCCCCChHHHHHHHHHhhcCCCcCEEECcCCCCCHHHHHHHHHHHhhC-CCcCEEec
Q 007577 401 DEGAEKIADALK-QNRTITTIDLGGNNIHSKGASAIARVLKDNSVITSLDLAYNPIGADGAKALSEVLKFH-GNINTLKL 478 (597)
Q Consensus 401 ~~~~~~l~~~l~-~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~-~~L~~L~L 478 (597)
+.++..+...+. .+++|++|++++|.+++.+...++..+..+++|++|++++|.+++.++..+...+... ++|++|++
T Consensus 241 ~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L 320 (461)
T 1z7x_W 241 DVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWV 320 (461)
T ss_dssp HHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEEC
T ss_pred hHHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEc
Confidence 554444444433 2445555555555555555555555555555555555555555555544444444322 35555555
Q ss_pred CCCCCChhHHHHHHHHHhcCCCccEEEccCCCCChHHHHHHHHHHhhcCccccEEEccCCCCChHHHHHHHHHHHhCCCC
Q 007577 479 GWCQIGASGAEFVADMLRYNNTISILDLRANGLRDEGAKCLAQSFKVVNEALTSIDLAFNEIRDDGAFAIAQALKANEDV 558 (597)
Q Consensus 479 ~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~n~i~~~~~~~l~~~l~~~n~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~ 558 (597)
++|.+++.+...+...+..+++|++|++++|.+++.++..+.+.+...+++|++|++++|.+++.+...+...+..++.
T Consensus 321 ~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~- 399 (461)
T 1z7x_W 321 KSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHS- 399 (461)
T ss_dssp TTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCC-
T ss_pred CCCCCchHHHHHHHHHHhhCCCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCCCCChhhHHHHHHHHHhCCC-
Confidence 5555555554455555555555555555555555555555554443323445555555555555555555544444443
Q ss_pred ceeEEEcccCccchhhHHHHHH
Q 007577 559 AVTSLNLANNFLTKFGQSALTD 580 (597)
Q Consensus 559 ~L~~L~L~~N~i~~~~~~~l~~ 580 (597)
|++|+|++|.|++.+...+.+
T Consensus 400 -L~~L~l~~N~i~~~~~~~l~~ 420 (461)
T 1z7x_W 400 -LRELDLSNNCLGDAGILQLVE 420 (461)
T ss_dssp -CCEEECCSSSCCHHHHHHHHH
T ss_pred -ccEEECCCCCCCHHHHHHHHH
Confidence 555555555555555544443
No 2
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=100.00 E-value=1.2e-42 Score=369.51 Aligned_cols=428 Identities=19% Similarity=0.260 Sum_probs=380.2
Q ss_pred HHHHHHHhcCCCcEEEcCCCCCCHHHHHHHHHHhccCCCccEEEeccCCCCHHHHHHHHHHhhhCC-CccEEEccCCCCC
Q 007577 153 TLNEFAKELRAFSSVDMSGRNFGDEGLFFLAESLGYNQTAEEVSFAANGITAAGIKAFDGVLQSNI-ALKTLNLSGNPIG 231 (597)
Q Consensus 153 ~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~l~~~l~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~-~L~~L~Ls~n~l~ 231 (597)
....++..+++|++|++++|.+++.+...++..+..+++|++|++++|.+++.+...+...+.... +|++|++++|.++
T Consensus 19 ~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~ 98 (461)
T 1z7x_W 19 RWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLT 98 (461)
T ss_dssp HHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCSTTCCCCEEECTTSCCB
T ss_pred hHHHHHhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHhhCCCceeEEEccCCCCC
Confidence 355667789999999999999999999999999999999999999999999988888877665444 7999999999999
Q ss_pred hhHHHHHHHHHhcCCCcCEEEecCCCCChHHHHHHHHHHHc-CCCccEEEeccCCCChhhHHHHHHHHhhCCCccEEEcC
Q 007577 232 DEGVKCLCDILVDNAGVERLQLSSVDLRDEGAKAIAELLKN-NSILRVLELNNNMIDYSGFTSLAEALLENSTIRSLHLN 310 (597)
Q Consensus 232 ~~~~~~l~~~l~~~~~L~~L~Ls~~~l~~~~~~~l~~~l~~-~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~L~ 310 (597)
+.++..++..+..+++|++|++++|.+++.+...+...+.. .++|++|++++|.+++.+...++..+..+++|++|+++
T Consensus 99 ~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~ 178 (461)
T 1z7x_W 99 GAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVS 178 (461)
T ss_dssp GGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCTTCCEEECC
T ss_pred HHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHHHHHHhhCCCCCEEECc
Confidence 99999999999999999999999999999988888887654 46899999999999999999999999999999999999
Q ss_pred CCCCChHHHHHHHHHhh-cCCCCCEEEccCCCCChHHHHHHHHhhhcCccccceeeccCCCCChhHHHHHHHHHH-cCCC
Q 007577 311 GNYGGALGANALAKGLE-GNKSLRELHLHGNSIGDEGIRALMSGLSSRKGKLAVLDIGNNSISAKGAFHVAEYIK-NCKS 388 (597)
Q Consensus 311 ~n~i~~~~~~~l~~~l~-~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~-~~~~ 388 (597)
+|.+++.+...+...+. ..++|++|++++|.+++.+...+...+. .+++|++|++++|.+++.+...+...+. .+++
T Consensus 179 ~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~-~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~ 257 (461)
T 1z7x_W 179 NNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVA-SKASLRELALGSNKLGDVGMAELCPGLLHPSSR 257 (461)
T ss_dssp SSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHH-HCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCC
T ss_pred CCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHH-hCCCccEEeccCCcCChHHHHHHHHHHhcCCCC
Confidence 99999888877777665 4669999999999999988877777765 4558999999999999988877776655 5899
Q ss_pred CcEEEccCCCCCcHHHHHHHHHHhcCCCccEEEccCCCCChHHHHHHHHHhhcC-CCcCEEECcCCCCCHHHHHHHHHHH
Q 007577 389 LLWINLYMNDIGDEGAEKIADALKQNRTITTIDLGGNNIHSKGASAIARVLKDN-SVITSLDLAYNPIGADGAKALSEVL 467 (597)
Q Consensus 389 L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~-~~L~~L~Ls~n~i~~~~~~~l~~~l 467 (597)
|++|++++|.+++.+...++..+..+++|++|++++|.+++.+...++..+... ++|++|++++|.+++.+...+...+
T Consensus 258 L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l 337 (461)
T 1z7x_W 258 LRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVL 337 (461)
T ss_dssp CCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHH
T ss_pred ceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCCCCCchHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999998887765 6999999999999999999999999
Q ss_pred hhCCCcCEEecCCCCCChhHHHHHHHHHhc-CCCccEEEccCCCCChHHHHHHHHHHhhcCccccEEEccCCCCChHHHH
Q 007577 468 KFHGNINTLKLGWCQIGASGAEFVADMLRY-NNTISILDLRANGLRDEGAKCLAQSFKVVNEALTSIDLAFNEIRDDGAF 546 (597)
Q Consensus 468 ~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~-~~~L~~L~l~~n~i~~~~~~~l~~~l~~~n~~L~~L~Ls~n~i~~~~~~ 546 (597)
..+++|++|++++|.+++.++..+...+.. +++|++|++++|.+++.+...+...+.. +++|++|++++|+|++.+..
T Consensus 338 ~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~-~~~L~~L~l~~N~i~~~~~~ 416 (461)
T 1z7x_W 338 AQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLA-NHSLRELDLSNNCLGDAGIL 416 (461)
T ss_dssp HHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHH-CCCCCEEECCSSSCCHHHHH
T ss_pred hhCCCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCCCCChhhHHHHHHHHHh-CCCccEEECCCCCCCHHHHH
Confidence 999999999999999999999888887765 7899999999999999998888887764 48999999999999999999
Q ss_pred HHHHHHHhCCCCceeEEEcccCccchhhHHHHHHHHH
Q 007577 547 AIAQALKANEDVAVTSLNLANNFLTKFGQSALTDAKD 583 (597)
Q Consensus 547 ~l~~~l~~~~~~~L~~L~L~~N~i~~~~~~~l~~~~~ 583 (597)
.+.+.+.... ..|+.|++.++.+.....+.+.....
T Consensus 417 ~l~~~l~~~~-~~L~~L~~~~~~~~~~~~~~l~~l~~ 452 (461)
T 1z7x_W 417 QLVESVRQPG-CLLEQLVLYDIYWSEEMEDRLQALEK 452 (461)
T ss_dssp HHHHHHTSTT-CCCCEEECTTCCCCHHHHHHHHHHHH
T ss_pred HHHHHhccCC-cchhheeecccccCHHHHHHHHHHhc
Confidence 9998876432 35999999999998876666555443
No 3
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=100.00 E-value=1.9e-31 Score=276.24 Aligned_cols=293 Identities=21% Similarity=0.299 Sum_probs=158.0
Q ss_pred CCHHHHHHHHHHhhhCCCccEEEccCCCCChhHHHHHHHHHhcCCCcCEEEecCCCCC------hHHHHHHHHHHHcCCC
Q 007577 202 ITAAGIKAFDGVLQSNIALKTLNLSGNPIGDEGVKCLCDILVDNAGVERLQLSSVDLR------DEGAKAIAELLKNNSI 275 (597)
Q Consensus 202 l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~~~l~------~~~~~~l~~~l~~~~~ 275 (597)
+++.++..+...+..+++|++|+|++|.+++.+...++..+..+++|++|+|++|.+. ..++..++..+..+++
T Consensus 16 l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~ 95 (386)
T 2ca6_A 16 ITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPK 95 (386)
T ss_dssp CCSHHHHTTSHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTT
T ss_pred CCHHHHHHHHHHHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCc
Confidence 3333334443334444444444444444444444344333333444444444443222 1233334444444444
Q ss_pred ccEEEeccCCCChhhHHHHHHHHhhCCCccEEEcCCCCCChHHHHHHHHHhhcC---------CCCCEEEccCCCCChHH
Q 007577 276 LRVLELNNNMIDYSGFTSLAEALLENSTIRSLHLNGNYGGALGANALAKGLEGN---------KSLRELHLHGNSIGDEG 346 (597)
Q Consensus 276 L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~---------~~L~~L~Ls~n~i~~~~ 346 (597)
|++|+|++|.+++.+...++..+..+++|++|+|++|.++..+...++..+..+ ++|++|++++|.+++.+
T Consensus 96 L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~ 175 (386)
T 2ca6_A 96 LHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGS 175 (386)
T ss_dssp CCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGG
T ss_pred ccEEECCCCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHH
Confidence 445555444444444444444444444555555555544444444444444443 55666666666665555
Q ss_pred HHHHHHhhhcCccccceeeccCCCCChhHHHHHHH-HHHcCCCCcEEEccCCCCCcHHHHHHHHHHhcCCCccEEEccCC
Q 007577 347 IRALMSGLSSRKGKLAVLDIGNNSISAKGAFHVAE-YIKNCKSLLWINLYMNDIGDEGAEKIADALKQNRTITTIDLGGN 425 (597)
Q Consensus 347 ~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~-~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n 425 (597)
+..+...+.. +++|+.|++++|.+++.++..+.. .+..+++|++|+|++|.+++.+...++..+..+++|++|+|++|
T Consensus 176 ~~~l~~~l~~-~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n 254 (386)
T 2ca6_A 176 MKEWAKTFQS-HRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDC 254 (386)
T ss_dssp HHHHHHHHHH-CTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTC
T ss_pred HHHHHHHHHh-CCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCC
Confidence 5544444432 235666666666666555544444 55666667777777776666666666666666667777777777
Q ss_pred CCChHHHHHHHHHhhc--CCCcCEEECcCCCCCHHHHHHHHHHH-hhCCCcCEEecCCCCCChhH--HHHHHHHH
Q 007577 426 NIHSKGASAIARVLKD--NSVITSLDLAYNPIGADGAKALSEVL-KFHGNINTLKLGWCQIGASG--AEFVADML 495 (597)
Q Consensus 426 ~l~~~~~~~l~~~l~~--~~~L~~L~Ls~n~i~~~~~~~l~~~l-~~~~~L~~L~L~~n~i~~~~--~~~l~~~l 495 (597)
.|++.+...++..+.. +++|++|+|++|.+++.++..+...+ ..+++|++|++++|.++..+ ...+...+
T Consensus 255 ~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~~~~~~~~l~~~l 329 (386)
T 2ca6_A 255 LLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEEDDVVDEIREVF 329 (386)
T ss_dssp CCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTTSHHHHHHHHHH
T ss_pred CCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCcchhHHHHHHHHh
Confidence 7777666666666644 66777777777777766666666665 44577777777777766655 34454444
No 4
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=100.00 E-value=3.2e-31 Score=274.66 Aligned_cols=298 Identities=21% Similarity=0.290 Sum_probs=160.6
Q ss_pred cCCCCChhHHHHHHHHHhcCCCcCEEEecCCCCChHHHHHHHHHHHcCCCccEEEeccCCCC------hhhHHHHHHHHh
Q 007577 226 SGNPIGDEGVKCLCDILVDNAGVERLQLSSVDLRDEGAKAIAELLKNNSILRVLELNNNMID------YSGFTSLAEALL 299 (597)
Q Consensus 226 s~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~------~~~~~~l~~~l~ 299 (597)
..+.+++.++..+...+..+++|++|+|++|.+++.+...++..+..+++|++|+|++|.+. ..++..+..++.
T Consensus 12 ~~~~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~ 91 (386)
T 2ca6_A 12 KLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALL 91 (386)
T ss_dssp EESSCCSHHHHTTSHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHT
T ss_pred ccCCCCHHHHHHHHHHHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHh
Confidence 33445555555555555555555555555555555555555555555555555555554332 224444555555
Q ss_pred hCCCccEEEcCCCCCChHHHHHHHHHhhcCCCCCEEEccCCCCChHHHHHHHHhhhcCc--------cccceeeccCCCC
Q 007577 300 ENSTIRSLHLNGNYGGALGANALAKGLEGNKSLRELHLHGNSIGDEGIRALMSGLSSRK--------GKLAVLDIGNNSI 371 (597)
Q Consensus 300 ~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~--------~~L~~L~Ls~n~l 371 (597)
.+++|++|+|++|.++..+...++..+..+++|++|++++|.+++.+...+...+.... ++|++|++++|.+
T Consensus 92 ~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l 171 (386)
T 2ca6_A 92 KCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRL 171 (386)
T ss_dssp TCTTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCC
T ss_pred hCCcccEEECCCCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCC
Confidence 55555555555555555555555555555555555555555555544444443332110 3555555555555
Q ss_pred ChhHHHHHHHHHHcCCCCcEEEccCCCCCcHHHHHHHH-HHhcCCCccEEEccCCCCChHHHHHHHHHhhcCCCcCEEEC
Q 007577 372 SAKGAFHVAEYIKNCKSLLWINLYMNDIGDEGAEKIAD-ALKQNRTITTIDLGGNNIHSKGASAIARVLKDNSVITSLDL 450 (597)
Q Consensus 372 ~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~-~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L 450 (597)
++.++..+...+..+++|++|++++|.+++.++..+.. .+..+++|++|+|++|.|++.+...++..+..+++|++|+|
T Consensus 172 ~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L 251 (386)
T 2ca6_A 172 ENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGL 251 (386)
T ss_dssp TGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEEC
T ss_pred CcHHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEEC
Confidence 55544445455555555555555555555555555544 55555555555555555555555555555555555555555
Q ss_pred cCCCCCHHHHHHHHHHHhh--CCCcCEEecCCCCCChhHHHHHHHHH-hcCCCccEEEccCCCCChHH--HHHHHHHH
Q 007577 451 AYNPIGADGAKALSEVLKF--HGNINTLKLGWCQIGASGAEFVADML-RYNNTISILDLRANGLRDEG--AKCLAQSF 523 (597)
Q Consensus 451 s~n~i~~~~~~~l~~~l~~--~~~L~~L~L~~n~i~~~~~~~l~~~l-~~~~~L~~L~l~~n~i~~~~--~~~l~~~l 523 (597)
++|.+++.+...+...+.. +++|++|+|++|.+++.+...+...+ ..+++|+.|++++|.+++.+ ...+...+
T Consensus 252 ~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~~~~~~~~l~~~l 329 (386)
T 2ca6_A 252 NDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEEDDVVDEIREVF 329 (386)
T ss_dssp TTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTTSHHHHHHHHHH
T ss_pred CCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCcchhHHHHHHHHh
Confidence 5555555555555555533 55555555555555555555454444 33455555555555555544 24444443
No 5
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.98 E-value=2.3e-31 Score=291.74 Aligned_cols=390 Identities=16% Similarity=0.199 Sum_probs=298.3
Q ss_pred HHHHHHHHhcCCCcEEEcCCCCCCHHHHHHHHHHhccCCCccEEEeccCC-CCHHHHHHHHHHhhhCCCccEEEccCCCC
Q 007577 152 QTLNEFAKELRAFSSVDMSGRNFGDEGLFFLAESLGYNQTAEEVSFAANG-ITAAGIKAFDGVLQSNIALKTLNLSGNPI 230 (597)
Q Consensus 152 ~~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~l~~~l~~~~~L~~L~L~~~~-l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l 230 (597)
..+..+...+++|++|+|++|.+++.....++..+. .+|++|++++|. ++..++ ......+++|++|+|++|.+
T Consensus 102 ~~l~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~--~~L~~L~L~~~~~~~~~~l---~~~~~~~~~L~~L~L~~~~~ 176 (592)
T 3ogk_B 102 PWVTEISNNLRQLKSVHFRRMIVSDLDLDRLAKARA--DDLETLKLDKCSGFTTDGL---LSIVTHCRKIKTLLMEESSF 176 (592)
T ss_dssp HHHHHHHHHCTTCCEEEEESCBCCHHHHHHHHHHHG--GGCCEEEEESCEEEEHHHH---HHHHHHCTTCSEEECTTCEE
T ss_pred HHHHHHHhhCCCCCeEEeeccEecHHHHHHHHHhcc--ccCcEEECcCCCCcCHHHH---HHHHhhCCCCCEEECccccc
Confidence 345566778999999999999999988777766532 249999999996 555444 44446789999999999998
Q ss_pred ChhHHHHHHHHHhcCCCcCEEEecCCCCChHHHHHHHHHHHcCCCccEEEeccCCCChhhHHHHHHHHhhCCCccEEEcC
Q 007577 231 GDEGVKCLCDILVDNAGVERLQLSSVDLRDEGAKAIAELLKNNSILRVLELNNNMIDYSGFTSLAEALLENSTIRSLHLN 310 (597)
Q Consensus 231 ~~~~~~~l~~~l~~~~~L~~L~Ls~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~L~ 310 (597)
++.+...+...+..+++|++|++++|.++......+...+..+++|++|++++|.+.+ ++..+..+++|++|+++
T Consensus 177 ~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~-----l~~~~~~~~~L~~L~l~ 251 (592)
T 3ogk_B 177 SEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILE-----LVGFFKAAANLEEFCGG 251 (592)
T ss_dssp ECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGG-----GHHHHHHCTTCCEEEEC
T ss_pred cCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHHH-----HHHHHhhhhHHHhhccc
Confidence 7777666666677789999999999998744455677778889999999999998753 45667778899999887
Q ss_pred CCCCC----------------------hHHHHHHHHHhhcCCCCCEEEccCCCCChHHHHHHHHhhhcCccccceeeccC
Q 007577 311 GNYGG----------------------ALGANALAKGLEGNKSLRELHLHGNSIGDEGIRALMSGLSSRKGKLAVLDIGN 368 (597)
Q Consensus 311 ~n~i~----------------------~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~Ls~ 368 (597)
..... ......++..+..+++|++|++++|.+++.++..+. ..+++|+.|+++
T Consensus 252 ~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~----~~~~~L~~L~L~- 326 (592)
T 3ogk_B 252 SLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPNEMPILFPFAAQIRKLDLLYALLETEDHCTLI----QKCPNLEVLETR- 326 (592)
T ss_dssp BCCCCTTCTTSSSCCCCCTTCCEEEETTCCTTTGGGGGGGGGGCCEEEETTCCCCHHHHHHHH----TTCTTCCEEEEE-
T ss_pred ccccccchHHHHHHhhccccccccCccccchhHHHHHHhhcCCCcEEecCCCcCCHHHHHHHH----HhCcCCCEEecc-
Confidence 42111 011122334566788999999999998887665443 455689999999
Q ss_pred CCCChhHHHHHHHHHHcCCCCcEEEcc-----------CCCCCcHHHHHHHHHHhcCCCccEEEccCCCCChHHHHHHHH
Q 007577 369 NSISAKGAFHVAEYIKNCKSLLWINLY-----------MNDIGDEGAEKIADALKQNRTITTIDLGGNNIHSKGASAIAR 437 (597)
Q Consensus 369 n~l~~~~~~~l~~~l~~~~~L~~L~Ls-----------~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~ 437 (597)
+.+++.+ +......+++|++|+++ .+.+++.++..+.. .+++|++|++..+.+++.++..++.
T Consensus 327 ~~~~~~~---l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~---~~~~L~~L~l~~~~l~~~~~~~l~~ 400 (592)
T 3ogk_B 327 NVIGDRG---LEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQ---GCQELEYMAVYVSDITNESLESIGT 400 (592)
T ss_dssp GGGHHHH---HHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHH---HCTTCSEEEEEESCCCHHHHHHHHH
T ss_pred CccCHHH---HHHHHHhCCCCCEEEeecCccccccccccCccCHHHHHHHHh---hCccCeEEEeecCCccHHHHHHHHh
Confidence 5565543 44455778999999999 36888877665543 4789999999999999988777765
Q ss_pred HhhcCCCcCEEECc----CCCCCH----HHHHHHHHHHhhCCCcCEEecCCCC--CChhHHHHHHHHHhcCCCccEEEcc
Q 007577 438 VLKDNSVITSLDLA----YNPIGA----DGAKALSEVLKFHGNINTLKLGWCQ--IGASGAEFVADMLRYNNTISILDLR 507 (597)
Q Consensus 438 ~l~~~~~L~~L~Ls----~n~i~~----~~~~~l~~~l~~~~~L~~L~L~~n~--i~~~~~~~l~~~l~~~~~L~~L~l~ 507 (597)
. +++|++|+++ .|.+++ .++. ..+..+++|++|++++|. +++.+...+. ..+++|+.|+++
T Consensus 401 ~---~~~L~~L~l~~~~~~n~l~~~p~~~~~~---~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~---~~~~~L~~L~L~ 471 (592)
T 3ogk_B 401 Y---LKNLCDFRLVLLDREERITDLPLDNGVR---SLLIGCKKLRRFAFYLRQGGLTDLGLSYIG---QYSPNVRWMLLG 471 (592)
T ss_dssp H---CCSCCEEEEEECSCCSCCSSCCCHHHHH---HHHHHCTTCCEEEEECCGGGCCHHHHHHHH---HSCTTCCEEEEC
T ss_pred h---CCCCcEEEEeecCCCccccCchHHHHHH---HHHHhCCCCCEEEEecCCCCccHHHHHHHH---HhCccceEeecc
Confidence 3 6899999996 667775 2443 345668999999998664 7877666554 457999999999
Q ss_pred CCCCChHHHHHHHHHHhhcCccccEEEccCCCCChHHHHHHHHHHHhCCCCceeEEEcccCccchhhHHHHHH
Q 007577 508 ANGLRDEGAKCLAQSFKVVNEALTSIDLAFNEIRDDGAFAIAQALKANEDVAVTSLNLANNFLTKFGQSALTD 580 (597)
Q Consensus 508 ~n~i~~~~~~~l~~~l~~~n~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~N~i~~~~~~~l~~ 580 (597)
+|.+++.++..+...+ ++|++|+|++|.+++.+...+...+ + +|+.|+|++|++++.|.+.+..
T Consensus 472 ~n~l~~~~~~~~~~~~----~~L~~L~l~~n~l~~~~~~~~~~~l---~--~L~~L~ls~n~it~~~~~~l~~ 535 (592)
T 3ogk_B 472 YVGESDEGLMEFSRGC----PNLQKLEMRGCCFSERAIAAAVTKL---P--SLRYLWVQGYRASMTGQDLMQM 535 (592)
T ss_dssp SCCSSHHHHHHHHTCC----TTCCEEEEESCCCBHHHHHHHHHHC---S--SCCEEEEESCBCCTTCTTGGGG
T ss_pred CCCCCHHHHHHHHhcC----cccCeeeccCCCCcHHHHHHHHHhc---C--ccCeeECcCCcCCHHHHHHHHH
Confidence 9999998877765543 6799999999999988877775532 3 4999999999999998877754
No 6
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.98 E-value=3.1e-30 Score=282.90 Aligned_cols=384 Identities=16% Similarity=0.186 Sum_probs=282.2
Q ss_pred HHHHHHHhcCCCcEEEcCCCCCCHHHHHHHHHHhccCCCccEEEeccC-CCCHHHHHHHHHHhhhCCCccEEEccCCCCC
Q 007577 153 TLNEFAKELRAFSSVDMSGRNFGDEGLFFLAESLGYNQTAEEVSFAAN-GITAAGIKAFDGVLQSNIALKTLNLSGNPIG 231 (597)
Q Consensus 153 ~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~l~~~l~~~~~L~~L~L~~~-~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~ 231 (597)
.+..+...+++|++|+|++|.+++..+..++.. +++|++|++++| .+++.++..+ ...+++|++|++++|.++
T Consensus 96 ~l~~l~~~~~~L~~L~L~~~~~~~~~~~~l~~~---~~~L~~L~L~~~~~~~~~~l~~~---~~~~~~L~~L~L~~~~i~ 169 (594)
T 2p1m_B 96 WIEAMSSSYTWLEEIRLKRMVVTDDCLELIAKS---FKNFKVLVLSSCEGFSTDGLAAI---AATCRNLKELDLRESDVD 169 (594)
T ss_dssp HHHHHHHHCTTCCEEEEESCBCCHHHHHHHHHH---CTTCCEEEEESCEEEEHHHHHHH---HHHCTTCCEEECTTCEEE
T ss_pred HHHHHHHhCCCCCeEEeeCcEEcHHHHHHHHHh---CCCCcEEeCCCcCCCCHHHHHHH---HHhCCCCCEEeCcCCccC
Confidence 455666788999999999999998876666533 689999999999 6776554443 456788999999998877
Q ss_pred hhHHHHHHHHHhcCCCcCEEEecCCC--CChHHHHHHHHHHHcCCCccEEEeccCCCChhhHHHHHHHHhhCCCccEEEc
Q 007577 232 DEGVKCLCDILVDNAGVERLQLSSVD--LRDEGAKAIAELLKNNSILRVLELNNNMIDYSGFTSLAEALLENSTIRSLHL 309 (597)
Q Consensus 232 ~~~~~~l~~~l~~~~~L~~L~Ls~~~--l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~L 309 (597)
+.+...+......+++|++|++++|. ++... +......+++|++|++++|.- +..++..+..+++|++|++
T Consensus 170 ~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~---l~~l~~~~~~L~~L~L~~~~~----~~~l~~~~~~~~~L~~L~l 242 (594)
T 2p1m_B 170 DVSGHWLSHFPDTYTSLVSLNISCLASEVSFSA---LERLVTRCPNLKSLKLNRAVP----LEKLATLLQRAPQLEELGT 242 (594)
T ss_dssp CCCGGGGGGSCTTCCCCCEEECTTCCSCCCHHH---HHHHHHHCTTCCEEECCTTSC----HHHHHHHHHHCTTCSEEEC
T ss_pred CcchHHHHHHhhcCCcCcEEEecccCCcCCHHH---HHHHHHhCCCCcEEecCCCCc----HHHHHHHHhcCCcceEccc
Confidence 66555555554567889999999886 55543 444455578899999988832 1335666667788888876
Q ss_pred CCCC--CChHHHHHH------------------------HHHhhcCCCCCEEEccCCCCChHHHHHHHHhhhcCccccce
Q 007577 310 NGNY--GGALGANAL------------------------AKGLEGNKSLRELHLHGNSIGDEGIRALMSGLSSRKGKLAV 363 (597)
Q Consensus 310 ~~n~--i~~~~~~~l------------------------~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~ 363 (597)
+.+. +.......+ ...+..+++|++|++++|.+++.++..+. ..+++|+.
T Consensus 243 ~~~~~~~~~~~~~~l~~~l~~~~~L~~Ls~~~~~~~~~l~~~~~~~~~L~~L~L~~~~l~~~~l~~~~----~~~~~L~~ 318 (594)
T 2p1m_B 243 GGYTAEVRPDVYSGLSVALSGCKELRCLSGFWDAVPAYLPAVYSVCSRLTTLNLSYATVQSYDLVKLL----CQCPKLQR 318 (594)
T ss_dssp SBCCCCCCHHHHHHHHHHHHTCTTCCEEECCBTCCGGGGGGGHHHHTTCCEEECTTCCCCHHHHHHHH----TTCTTCCE
T ss_pred ccccCccchhhHHHHHHHHhcCCCcccccCCcccchhhHHHHHHhhCCCCEEEccCCCCCHHHHHHHH----hcCCCcCE
Confidence 6553 222222222 22223567889999999998877655543 35568999
Q ss_pred eeccCCCCChhHHHHHHHHHHcCCCCcEEEc---------cCCCCCcHHHHHHHHHHhcCCCccEEEccCCCCChHHHHH
Q 007577 364 LDIGNNSISAKGAFHVAEYIKNCKSLLWINL---------YMNDIGDEGAEKIADALKQNRTITTIDLGGNNIHSKGASA 434 (597)
Q Consensus 364 L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L---------s~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~ 434 (597)
|++++| +++.+ +......+++|++|++ ..+.+++.++..+.. .+++|++|.+..+.+++.+...
T Consensus 319 L~l~~~-~~~~~---l~~l~~~~~~L~~L~L~~~~~~g~~~~~~l~~~~l~~l~~---~~~~L~~L~~~~~~l~~~~~~~ 391 (594)
T 2p1m_B 319 LWVLDY-IEDAG---LEVLASTCKDLRELRVFPSEPFVMEPNVALTEQGLVSVSM---GCPKLESVLYFCRQMTNAALIT 391 (594)
T ss_dssp EEEEGG-GHHHH---HHHHHHHCTTCCEEEEECSCTTCSSCSSCCCHHHHHHHHH---HCTTCCEEEEEESCCCHHHHHH
T ss_pred EeCcCc-cCHHH---HHHHHHhCCCCCEEEEecCcccccccCCCCCHHHHHHHHH---hchhHHHHHHhcCCcCHHHHHH
Confidence 999988 55543 3344456899999998 345888887766554 3689999999999999988776
Q ss_pred HHHHhhcCCCcCEEECc--C----CCCC----HHHHHHHHHHHhhCCCcCEEecCCCCCChhHHHHHHHHHhcCCCccEE
Q 007577 435 IARVLKDNSVITSLDLA--Y----NPIG----ADGAKALSEVLKFHGNINTLKLGWCQIGASGAEFVADMLRYNNTISIL 504 (597)
Q Consensus 435 l~~~l~~~~~L~~L~Ls--~----n~i~----~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L 504 (597)
+... +++|++|+++ + +.++ +.++.. .+..+++|++|++++ .+++.+...+.. .+++|+.|
T Consensus 392 l~~~---~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~---l~~~~~~L~~L~L~~-~l~~~~~~~l~~---~~~~L~~L 461 (594)
T 2p1m_B 392 IARN---RPNMTRFRLCIIEPKAPDYLTLEPLDIGFGA---IVEHCKDLRRLSLSG-LLTDKVFEYIGT---YAKKMEML 461 (594)
T ss_dssp HHHH---CTTCCEEEEEESSTTCCCTTTCCCTHHHHHH---HHHHCTTCCEEECCS-SCCHHHHHHHHH---HCTTCCEE
T ss_pred HHhh---CCCcceeEeecccCCCcccccCCchhhHHHH---HHhhCCCccEEeecC-cccHHHHHHHHH---hchhccEe
Confidence 6543 6899999999 4 5677 555444 356688999999988 888887766655 36899999
Q ss_pred EccCCCCChHHHHHHHHHHhhcCccccEEEccCCCCChHHHHHHHHHHHhCCCCceeEEEcccCccchhhHHHHH
Q 007577 505 DLRANGLRDEGAKCLAQSFKVVNEALTSIDLAFNEIRDDGAFAIAQALKANEDVAVTSLNLANNFLTKFGQSALT 579 (597)
Q Consensus 505 ~l~~n~i~~~~~~~l~~~l~~~n~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~N~i~~~~~~~l~ 579 (597)
++++|.+++.++..+...+ ++|++|+|++|.+++.+...+...+ .+|+.|++++|.++..+.+.+.
T Consensus 462 ~L~~~~i~~~~~~~l~~~~----~~L~~L~L~~n~~~~~~~~~~~~~l-----~~L~~L~l~~~~~~~~~~~~l~ 527 (594)
T 2p1m_B 462 SVAFAGDSDLGMHHVLSGC----DSLRKLEIRDCPFGDKALLANASKL-----ETMRSLWMSSCSVSFGACKLLG 527 (594)
T ss_dssp EEESCCSSHHHHHHHHHHC----TTCCEEEEESCSCCHHHHHHTGGGG-----GGSSEEEEESSCCBHHHHHHHH
T ss_pred eccCCCCcHHHHHHHHhcC----CCcCEEECcCCCCcHHHHHHHHHhC-----CCCCEEeeeCCCCCHHHHHHHH
Confidence 9999999999988886654 6799999999999988877665432 2499999999999888887764
No 7
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.97 E-value=2.9e-30 Score=264.80 Aligned_cols=277 Identities=16% Similarity=0.215 Sum_probs=128.9
Q ss_pred CCccEEEccCCCCChhHHHHHHHHHhcCC-CcCEEEecCCCCChHHHHHHHHHHHcC-CCccEEEeccCCCChhhHHHHH
Q 007577 218 IALKTLNLSGNPIGDEGVKCLCDILVDNA-GVERLQLSSVDLRDEGAKAIAELLKNN-SILRVLELNNNMIDYSGFTSLA 295 (597)
Q Consensus 218 ~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~-~L~~L~Ls~~~l~~~~~~~l~~~l~~~-~~L~~L~Ls~n~i~~~~~~~l~ 295 (597)
++|++|++++|.+++.+...++..+..++ +|++|++++|.+++.+...+...+... ++|++|++++|.+++.+...+.
T Consensus 22 ~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~ 101 (362)
T 3goz_A 22 HGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSDELV 101 (362)
T ss_dssp TTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHH
T ss_pred CCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcCChHHHHHHH
Confidence 33555555555555554444444444444 455555555555554444444444443 4455555555555444444444
Q ss_pred HHHhhC-CCccEEEcCCCCCChHHHHHHHHHhhcCCCCCEEEccCCCCChHHHHHHHHhhhcCccccceeeccCCCCChh
Q 007577 296 EALLEN-STIRSLHLNGNYGGALGANALAKGLEGNKSLRELHLHGNSIGDEGIRALMSGLSSRKGKLAVLDIGNNSISAK 374 (597)
Q Consensus 296 ~~l~~~-~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~ 374 (597)
..+..+ ++|++|++++|.++..+...+...+..+ ..+|++|++++|.+++.
T Consensus 102 ~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~----------------------------~~~L~~L~Ls~N~l~~~ 153 (362)
T 3goz_A 102 KTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNL----------------------------PASITSLNLRGNDLGIK 153 (362)
T ss_dssp HHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTS----------------------------CTTCCEEECTTSCGGGS
T ss_pred HHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhC----------------------------CCceeEEEccCCcCCHH
Confidence 444443 4444444444444444444443333331 12344444444444444
Q ss_pred HHHHHHHHHHcCC-CCcEEEccCCCCCcHHHHHHHHHHhcC-CCccEEEccCCCCChHHHHHHHHHhhc-CCCcCEEECc
Q 007577 375 GAFHVAEYIKNCK-SLLWINLYMNDIGDEGAEKIADALKQN-RTITTIDLGGNNIHSKGASAIARVLKD-NSVITSLDLA 451 (597)
Q Consensus 375 ~~~~l~~~l~~~~-~L~~L~Ls~n~l~~~~~~~l~~~l~~~-~~L~~L~L~~n~l~~~~~~~l~~~l~~-~~~L~~L~Ls 451 (597)
+...++..+..++ +|++|+|++|.+++.+...+...+..+ ++|++|+|++|.|++.+...++..+.. +++|++|+|+
T Consensus 154 ~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls 233 (362)
T 3goz_A 154 SSDELIQILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLC 233 (362)
T ss_dssp CHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECC
T ss_pred HHHHHHHHHhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECc
Confidence 3334444444433 444444444444444444444444444 244444444444444444444444443 2345555555
Q ss_pred CCCCCHHHHHHHHHHHhhCCCcCEEecCCCC---CChhHHHHHHHHHhcCCCccEEEccCCCCChHHHHHHHHH
Q 007577 452 YNPIGADGAKALSEVLKFHGNINTLKLGWCQ---IGASGAEFVADMLRYNNTISILDLRANGLRDEGAKCLAQS 522 (597)
Q Consensus 452 ~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~---i~~~~~~~l~~~l~~~~~L~~L~l~~n~i~~~~~~~l~~~ 522 (597)
+|.+++.++..+...+..+++|++|++++|. ++..+...+...+..+++|+.||+++|.+.+.....+...
T Consensus 234 ~N~l~~~~~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~l~~~~~~~~~~~ 307 (362)
T 3goz_A 234 LNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHPSHSIPISNL 307 (362)
T ss_dssp SSCCCCCCHHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCBCCGGGCHHHHHH
T ss_pred CCCCCcHHHHHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCcCCCcchHHHHHH
Confidence 5555444444444444444455555555554 3333344444444445555555555555555444444433
No 8
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.97 E-value=4.9e-30 Score=263.14 Aligned_cols=299 Identities=21% Similarity=0.274 Sum_probs=243.9
Q ss_pred EEecCCCCChHHHHHHHHHHHcCCCccEEEeccCCCChhhHHHHHHHHhhCC-CccEEEcCCCCCChHHHHHHHHHhhcC
Q 007577 251 LQLSSVDLRDEGAKAIAELLKNNSILRVLELNNNMIDYSGFTSLAEALLENS-TIRSLHLNGNYGGALGANALAKGLEGN 329 (597)
Q Consensus 251 L~Ls~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~-~L~~L~L~~n~i~~~~~~~l~~~l~~~ 329 (597)
+++++|.++.. ++..+...++|++|++++|.+++.+...+..++..++ +|++|++++|.++..+...+...+...
T Consensus 3 ~~ls~n~~~~~----~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~ 78 (362)
T 3goz_A 3 YKLTLHPGSNP----VEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAI 78 (362)
T ss_dssp EECCCCTTCCH----HHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTS
T ss_pred cccccccchHH----HHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhcc
Confidence 45666776654 4455555556777777777777777777777777777 777888877777777666666666665
Q ss_pred -CCCCEEEccCCCCChHHHHHHHHhhhcCccccceeeccCCCCChhHHHHHHHHHHcC-CCCcEEEccCCCCCcHHHHHH
Q 007577 330 -KSLRELHLHGNSIGDEGIRALMSGLSSRKGKLAVLDIGNNSISAKGAFHVAEYIKNC-KSLLWINLYMNDIGDEGAEKI 407 (597)
Q Consensus 330 -~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~-~~L~~L~Ls~n~l~~~~~~~l 407 (597)
++|++|++++|.+++.+...+...+....++|+.|++++|.+++.+...+...+..+ ++|++|+|++|.+++.+...+
T Consensus 79 ~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l 158 (362)
T 3goz_A 79 PANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDEL 158 (362)
T ss_dssp CTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHH
T ss_pred CCCccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHH
Confidence 788888888888887777777666654435889999999988887777777777774 699999999999999999999
Q ss_pred HHHHhcCC-CccEEEccCCCCChHHHHHHHHHhhcCC-CcCEEECcCCCCCHHHHHHHHHHHhh-CCCcCEEecCCCCCC
Q 007577 408 ADALKQNR-TITTIDLGGNNIHSKGASAIARVLKDNS-VITSLDLAYNPIGADGAKALSEVLKF-HGNINTLKLGWCQIG 484 (597)
Q Consensus 408 ~~~l~~~~-~L~~L~L~~n~l~~~~~~~l~~~l~~~~-~L~~L~Ls~n~i~~~~~~~l~~~l~~-~~~L~~L~L~~n~i~ 484 (597)
+..+...+ +|++|+|++|+|++.+...++..+..++ +|++|+|++|.|++.+...+...+.. +++|++|++++|.++
T Consensus 159 ~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~ 238 (362)
T 3goz_A 159 IQILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLH 238 (362)
T ss_dssp HHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCC
T ss_pred HHHHhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCC
Confidence 99988876 9999999999999999999999999885 99999999999999999989888877 459999999999999
Q ss_pred hhHHHHHHHHHhcCCCccEEEccCCC---CChHHHHHHHHHHhhcCccccEEEccCCCCChHHHHHHHHHHHh
Q 007577 485 ASGAEFVADMLRYNNTISILDLRANG---LRDEGAKCLAQSFKVVNEALTSIDLAFNEIRDDGAFAIAQALKA 554 (597)
Q Consensus 485 ~~~~~~l~~~l~~~~~L~~L~l~~n~---i~~~~~~~l~~~l~~~n~~L~~L~Ls~n~i~~~~~~~l~~~l~~ 554 (597)
+.+...+...+..+++|++|++++|. +++.+...+...+.. .++|+.||+++|.+.+..+..+.+.++.
T Consensus 239 ~~~~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~-l~~L~~LdL~~N~l~~~~~~~~~~~l~~ 310 (362)
T 3goz_A 239 GPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPN-IQKIILVDKNGKEIHPSHSIPISNLIRE 310 (362)
T ss_dssp CCCHHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTT-CCEEEEECTTSCBCCGGGCHHHHHHHHH
T ss_pred cHHHHHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhcc-CCceEEEecCCCcCCCcchHHHHHHHHH
Confidence 99998888888899999999999997 777777777766653 3779999999999998877777766553
No 9
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.97 E-value=7.7e-29 Score=271.66 Aligned_cols=389 Identities=15% Similarity=0.178 Sum_probs=289.8
Q ss_pred HHHHhcCCCcEEEcCCCCC-----------CHHHHHHHHHHhccCCCccEEEeccCCCCHHHHHHHHHHhhhCCCccEEE
Q 007577 156 EFAKELRAFSSVDMSGRNF-----------GDEGLFFLAESLGYNQTAEEVSFAANGITAAGIKAFDGVLQSNIALKTLN 224 (597)
Q Consensus 156 ~~~~~~~~L~~L~Ls~~~l-----------~~~~~~~l~~~l~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~ 224 (597)
.++..+++|++|+++++.. +......+......+++|++|+|++|.+++..+..+...+. .+|++|+
T Consensus 67 ~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~--~~L~~L~ 144 (592)
T 3ogk_B 67 RLSRRFPNLRSLKLKGKPRAAMFNLIPENWGGYVTPWVTEISNNLRQLKSVHFRRMIVSDLDLDRLAKARA--DDLETLK 144 (592)
T ss_dssp HHHHHCTTCSEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHHHHHHHHG--GGCCEEE
T ss_pred HHHHhCCCCeEEEecCCcchhhcccccccccccchHHHHHHHhhCCCCCeEEeeccEecHHHHHHHHHhcc--ccCcEEE
Confidence 5677899999999987531 11111223444456899999999999999888777765432 2499999
Q ss_pred ccCCC-CChhHHHHHHHHHhcCCCcCEEEecCCCCChHHHHHHHHHHHcCCCccEEEeccCCCChhhHHHHHHHHhhCCC
Q 007577 225 LSGNP-IGDEGVKCLCDILVDNAGVERLQLSSVDLRDEGAKAIAELLKNNSILRVLELNNNMIDYSGFTSLAEALLENST 303 (597)
Q Consensus 225 Ls~n~-l~~~~~~~l~~~l~~~~~L~~L~Ls~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~ 303 (597)
+++|. +++.++ ......+++|++|+|++|.+++.+...+......+++|++|++++|.++......+...+..+++
T Consensus 145 L~~~~~~~~~~l---~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~ 221 (592)
T 3ogk_B 145 LDKCSGFTTDGL---LSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRS 221 (592)
T ss_dssp EESCEEEEHHHH---HHHHHHCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTT
T ss_pred CcCCCCcCHHHH---HHHHhhCCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCC
Confidence 99986 444443 34444689999999999998776655677777788999999999999875455666777778999
Q ss_pred ccEEEcCCCCCChHHHHHHHHHhhcCCCCCEEEccCCCCC-------------------------hHHHHHHHHhhhcCc
Q 007577 304 IRSLHLNGNYGGALGANALAKGLEGNKSLRELHLHGNSIG-------------------------DEGIRALMSGLSSRK 358 (597)
Q Consensus 304 L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~-------------------------~~~~~~l~~~l~~~~ 358 (597)
|++|++++|.+... +..+..+++|++|+++..... ...+. .+...+
T Consensus 222 L~~L~L~~~~~~~l-----~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~l~----~~~~~~ 292 (592)
T 3ogk_B 222 LVSVKVGDFEILEL-----VGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPNEMP----ILFPFA 292 (592)
T ss_dssp CCEEECSSCBGGGG-----HHHHHHCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCCTTTGG----GGGGGG
T ss_pred CcEEeccCccHHHH-----HHHHhhhhHHHhhcccccccccchHHHHHHhhccccccccCccccchhHHH----HHHhhc
Confidence 99999999987653 244667888888888642111 11111 122345
Q ss_pred cccceeeccCCCCChhHHHHHHHHHHcCCCCcEEEccCCCCCcHHHHHHHHHHhcCCCccEEEcc-----------CCCC
Q 007577 359 GKLAVLDIGNNSISAKGAFHVAEYIKNCKSLLWINLYMNDIGDEGAEKIADALKQNRTITTIDLG-----------GNNI 427 (597)
Q Consensus 359 ~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~-----------~n~l 427 (597)
++|++|++++|.+++.+ +...+..+++|++|+++ +.+++.++..+. ..+++|++|+++ .+.+
T Consensus 293 ~~L~~L~Ls~~~l~~~~---~~~~~~~~~~L~~L~L~-~~~~~~~l~~~~---~~~~~L~~L~L~~g~~~~~~~~~~~~~ 365 (592)
T 3ogk_B 293 AQIRKLDLLYALLETED---HCTLIQKCPNLEVLETR-NVIGDRGLEVLA---QYCKQLKRLRIERGADEQGMEDEEGLV 365 (592)
T ss_dssp GGCCEEEETTCCCCHHH---HHHHHTTCTTCCEEEEE-GGGHHHHHHHHH---HHCTTCCEEEEECCCCSSTTSSTTCCC
T ss_pred CCCcEEecCCCcCCHHH---HHHHHHhCcCCCEEecc-CccCHHHHHHHH---HhCCCCCEEEeecCccccccccccCcc
Confidence 68999999999988764 33457889999999999 667776655554 357899999999 3689
Q ss_pred ChHHHHHHHHHhhcCCCcCEEECcCCCCCHHHHHHHHHHHhhCCCcCEEecC----CCCCChhHH-HHHHHHHhcCCCcc
Q 007577 428 HSKGASAIARVLKDNSVITSLDLAYNPIGADGAKALSEVLKFHGNINTLKLG----WCQIGASGA-EFVADMLRYNNTIS 502 (597)
Q Consensus 428 ~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~L~----~n~i~~~~~-~~l~~~l~~~~~L~ 502 (597)
++.++..+.. .|++|++|+++.|.+++.++..+.. .+++|++|+++ .+.+++... ..+...+..+++|+
T Consensus 366 ~~~~~~~l~~---~~~~L~~L~l~~~~l~~~~~~~l~~---~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~ 439 (592)
T 3ogk_B 366 SQRGLIALAQ---GCQELEYMAVYVSDITNESLESIGT---YLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLR 439 (592)
T ss_dssp CHHHHHHHHH---HCTTCSEEEEEESCCCHHHHHHHHH---HCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCC
T ss_pred CHHHHHHHHh---hCccCeEEEeecCCccHHHHHHHHh---hCCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCC
Confidence 9887766644 4799999999999999987776654 46899999996 556776311 12344466789999
Q ss_pred EEEccCC--CCChHHHHHHHHHHhhcCccccEEEccCCCCChHHHHHHHHHHHhCCCCceeEEEcccCccchhhHHHHHH
Q 007577 503 ILDLRAN--GLRDEGAKCLAQSFKVVNEALTSIDLAFNEIRDDGAFAIAQALKANEDVAVTSLNLANNFLTKFGQSALTD 580 (597)
Q Consensus 503 ~L~l~~n--~i~~~~~~~l~~~l~~~n~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~N~i~~~~~~~l~~ 580 (597)
.|++++| .+++.++..+...+ ++|++|++++|.+++.+...+.. .++ +|++|+|++|.|++.+...+..
T Consensus 440 ~L~L~~~~~~l~~~~~~~~~~~~----~~L~~L~L~~n~l~~~~~~~~~~---~~~--~L~~L~l~~n~l~~~~~~~~~~ 510 (592)
T 3ogk_B 440 RFAFYLRQGGLTDLGLSYIGQYS----PNVRWMLLGYVGESDEGLMEFSR---GCP--NLQKLEMRGCCFSERAIAAAVT 510 (592)
T ss_dssp EEEEECCGGGCCHHHHHHHHHSC----TTCCEEEECSCCSSHHHHHHHHT---CCT--TCCEEEEESCCCBHHHHHHHHH
T ss_pred EEEEecCCCCccHHHHHHHHHhC----ccceEeeccCCCCCHHHHHHHHh---cCc--ccCeeeccCCCCcHHHHHHHHH
Confidence 9999865 48998888877643 67999999999999887766643 333 4999999999998877766543
No 10
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.96 E-value=1.2e-27 Score=262.37 Aligned_cols=372 Identities=16% Similarity=0.199 Sum_probs=266.0
Q ss_pred HHHHHHhcCCCcEEEcCCC-CCCHHHHHHHHHHhccCCCccEEEeccCCCCHHHHHHHHHHhhhCCCccEEEccCCC--C
Q 007577 154 LNEFAKELRAFSSVDMSGR-NFGDEGLFFLAESLGYNQTAEEVSFAANGITAAGIKAFDGVLQSNIALKTLNLSGNP--I 230 (597)
Q Consensus 154 l~~~~~~~~~L~~L~Ls~~-~l~~~~~~~l~~~l~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~--l 230 (597)
+..+.+.+++|++|+|++| .+++.++..+ +..+++|++|++++|.+++.+...+......+++|++|++++|. +
T Consensus 122 ~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~---~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~ 198 (594)
T 2p1m_B 122 LELIAKSFKNFKVLVLSSCEGFSTDGLAAI---AATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLASEV 198 (594)
T ss_dssp HHHHHHHCTTCCEEEEESCEEEEHHHHHHH---HHHCTTCCEEECTTCEEECCCGGGGGGSCTTCCCCCEEECTTCCSCC
T ss_pred HHHHHHhCCCCcEEeCCCcCCCCHHHHHHH---HHhCCCCCEEeCcCCccCCcchHHHHHHhhcCCcCcEEEecccCCcC
Confidence 3444456788888888888 6666654433 34578888888888877665555555555567788888888875 5
Q ss_pred ChhHHHHHHHHHhcCCCcCEEEecCCCCChHHHHHHHHHHHcCCCccEEEeccCC--CChhhHHHHHH------------
Q 007577 231 GDEGVKCLCDILVDNAGVERLQLSSVDLRDEGAKAIAELLKNNSILRVLELNNNM--IDYSGFTSLAE------------ 296 (597)
Q Consensus 231 ~~~~~~~l~~~l~~~~~L~~L~Ls~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~--i~~~~~~~l~~------------ 296 (597)
+...+ ......+++|++|++++|.- . ..+...+..+++|++|+++.+. +....+..+..
T Consensus 199 ~~~~l---~~l~~~~~~L~~L~L~~~~~-~---~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~l~~~~~L~~Ls 271 (594)
T 2p1m_B 199 SFSAL---ERLVTRCPNLKSLKLNRAVP-L---EKLATLLQRAPQLEELGTGGYTAEVRPDVYSGLSVALSGCKELRCLS 271 (594)
T ss_dssp CHHHH---HHHHHHCTTCCEEECCTTSC-H---HHHHHHHHHCTTCSEEECSBCCCCCCHHHHHHHHHHHHTCTTCCEEE
T ss_pred CHHHH---HHHHHhCCCCcEEecCCCCc-H---HHHHHHHhcCCcceEcccccccCccchhhHHHHHHHHhcCCCccccc
Confidence 44443 33334478888888887731 1 1255666667777777765542 22222222222
Q ss_pred ------------HHhhCCCccEEEcCCCCCChHHHHHHHHHhhcCCCCCEEEccCCCCChHHHHHHHHhhhcCcccccee
Q 007577 297 ------------ALLENSTIRSLHLNGNYGGALGANALAKGLEGNKSLRELHLHGNSIGDEGIRALMSGLSSRKGKLAVL 364 (597)
Q Consensus 297 ------------~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L 364 (597)
.+..+++|++|++++|.+++.. +...+..+++|++|++++| +++.++..+... +++|+.|
T Consensus 272 ~~~~~~~~~l~~~~~~~~~L~~L~L~~~~l~~~~---l~~~~~~~~~L~~L~l~~~-~~~~~l~~l~~~----~~~L~~L 343 (594)
T 2p1m_B 272 GFWDAVPAYLPAVYSVCSRLTTLNLSYATVQSYD---LVKLLCQCPKLQRLWVLDY-IEDAGLEVLAST----CKDLREL 343 (594)
T ss_dssp CCBTCCGGGGGGGHHHHTTCCEEECTTCCCCHHH---HHHHHTTCTTCCEEEEEGG-GHHHHHHHHHHH----CTTCCEE
T ss_pred CCcccchhhHHHHHHhhCCCCEEEccCCCCCHHH---HHHHHhcCCCcCEEeCcCc-cCHHHHHHHHHh----CCCCCEE
Confidence 2224678999999999987654 3345678999999999998 777666666543 4589999
Q ss_pred ec---------cCCCCChhHHHHHHHHHHcCCCCcEEEccCCCCCcHHHHHHHHHHhcCCCccEEEcc--C----CCCC-
Q 007577 365 DI---------GNNSISAKGAFHVAEYIKNCKSLLWINLYMNDIGDEGAEKIADALKQNRTITTIDLG--G----NNIH- 428 (597)
Q Consensus 365 ~L---------s~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~--~----n~l~- 428 (597)
++ ..+.+++.+...+ ...+++|++|++..|.+++.++..+.. .+++|++|+++ + +.++
T Consensus 344 ~L~~~~~~g~~~~~~l~~~~l~~l---~~~~~~L~~L~~~~~~l~~~~~~~l~~---~~~~L~~L~L~~~~~~~~~~l~~ 417 (594)
T 2p1m_B 344 RVFPSEPFVMEPNVALTEQGLVSV---SMGCPKLESVLYFCRQMTNAALITIAR---NRPNMTRFRLCIIEPKAPDYLTL 417 (594)
T ss_dssp EEECSCTTCSSCSSCCCHHHHHHH---HHHCTTCCEEEEEESCCCHHHHHHHHH---HCTTCCEEEEEESSTTCCCTTTC
T ss_pred EEecCcccccccCCCCCHHHHHHH---HHhchhHHHHHHhcCCcCHHHHHHHHh---hCCCcceeEeecccCCCcccccC
Confidence 98 3457887654433 356899999999999999987666554 36899999999 4 5777
Q ss_pred ---hHHHHHHHHHhhcCCCcCEEECcCCCCCHHHHHHHHHHHhhCCCcCEEecCCCCCChhHHHHHHHHHhcCCCccEEE
Q 007577 429 ---SKGASAIARVLKDNSVITSLDLAYNPIGADGAKALSEVLKFHGNINTLKLGWCQIGASGAEFVADMLRYNNTISILD 505 (597)
Q Consensus 429 ---~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~ 505 (597)
+.++..+ +..|++|++|++++ .+++.++..+.. .+++|++|++++|.+++.+...+. ..+++|++|+
T Consensus 418 ~~~~~~~~~l---~~~~~~L~~L~L~~-~l~~~~~~~l~~---~~~~L~~L~L~~~~i~~~~~~~l~---~~~~~L~~L~ 487 (594)
T 2p1m_B 418 EPLDIGFGAI---VEHCKDLRRLSLSG-LLTDKVFEYIGT---YAKKMEMLSVAFAGDSDLGMHHVL---SGCDSLRKLE 487 (594)
T ss_dssp CCTHHHHHHH---HHHCTTCCEEECCS-SCCHHHHHHHHH---HCTTCCEEEEESCCSSHHHHHHHH---HHCTTCCEEE
T ss_pred CchhhHHHHH---HhhCCCccEEeecC-cccHHHHHHHHH---hchhccEeeccCCCCcHHHHHHHH---hcCCCcCEEE
Confidence 5555544 55689999999988 789888777665 468999999999999988776654 3479999999
Q ss_pred ccCCCCChHHHHHHHHHHhhcCccccEEEccCCCCChHHHHHHHHHHHhCCCCceeEEEcccC
Q 007577 506 LRANGLRDEGAKCLAQSFKVVNEALTSIDLAFNEIRDDGAFAIAQALKANEDVAVTSLNLANN 568 (597)
Q Consensus 506 l~~n~i~~~~~~~l~~~l~~~n~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~N 568 (597)
+++|.+++.++..+...+ ++|+.|++++|.+++.+...+...+ + .++...+..+
T Consensus 488 L~~n~~~~~~~~~~~~~l----~~L~~L~l~~~~~~~~~~~~l~~~l---p--~l~i~~~~~~ 541 (594)
T 2p1m_B 488 IRDCPFGDKALLANASKL----ETMRSLWMSSCSVSFGACKLLGQKM---P--KLNVEVIDER 541 (594)
T ss_dssp EESCSCCHHHHHHTGGGG----GGSSEEEEESSCCBHHHHHHHHHHC---T--TEEEEEECSS
T ss_pred CcCCCCcHHHHHHHHHhC----CCCCEEeeeCCCCCHHHHHHHHHhC---C--CCEEEEecCC
Confidence 999999988877665543 6799999999999998888875442 2 2555555544
No 11
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.95 E-value=2.6e-28 Score=249.03 Aligned_cols=305 Identities=22% Similarity=0.236 Sum_probs=168.2
Q ss_pred hcCCCcEEEcCCCCCCHHHHHHHHHHhccCCCccEEEeccCCCCHHHHHHHHHHhhhCCCccEEEccCCCCChhHHHHHH
Q 007577 160 ELRAFSSVDMSGRNFGDEGLFFLAESLGYNQTAEEVSFAANGITAAGIKAFDGVLQSNIALKTLNLSGNPIGDEGVKCLC 239 (597)
Q Consensus 160 ~~~~L~~L~Ls~~~l~~~~~~~l~~~l~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~ 239 (597)
.++++++|+++++.+.+. ..+..+++|++|++++|.+++... +..+++|++|++++|.+++.
T Consensus 42 ~l~~L~~L~l~~~~i~~~------~~~~~~~~L~~L~l~~n~i~~~~~------~~~l~~L~~L~L~~n~i~~~------ 103 (347)
T 4fmz_A 42 ELESITKLVVAGEKVASI------QGIEYLTNLEYLNLNGNQITDISP------LSNLVKLTNLYIGTNKITDI------ 103 (347)
T ss_dssp HHTTCSEEECCSSCCCCC------TTGGGCTTCCEEECCSSCCCCCGG------GTTCTTCCEEECCSSCCCCC------
T ss_pred hcccccEEEEeCCccccc------hhhhhcCCccEEEccCCccccchh------hhcCCcCCEEEccCCcccCc------
Confidence 567788888888877653 235667788888888887765321 55667777787777777653
Q ss_pred HHHhcCCCcCEEEecCCCCChHHHHHHHHHHHcCCCccEEEeccCCCChhhHHHHHHHHhhCCCccEEEcCCCCCChHHH
Q 007577 240 DILVDNAGVERLQLSSVDLRDEGAKAIAELLKNNSILRVLELNNNMIDYSGFTSLAEALLENSTIRSLHLNGNYGGALGA 319 (597)
Q Consensus 240 ~~l~~~~~L~~L~Ls~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~ 319 (597)
..+..+++|++|++++|.+++... +..+++|++|++++|..... ...+..+++|++|++++|.+.....
T Consensus 104 ~~~~~l~~L~~L~l~~n~i~~~~~------~~~l~~L~~L~l~~n~~~~~-----~~~~~~l~~L~~L~l~~~~~~~~~~ 172 (347)
T 4fmz_A 104 SALQNLTNLRELYLNEDNISDISP------LANLTKMYSLNLGANHNLSD-----LSPLSNMTGLNYLTVTESKVKDVTP 172 (347)
T ss_dssp GGGTTCTTCSEEECTTSCCCCCGG------GTTCTTCCEEECTTCTTCCC-----CGGGTTCTTCCEEECCSSCCCCCGG
T ss_pred hHHcCCCcCCEEECcCCcccCchh------hccCCceeEEECCCCCCccc-----ccchhhCCCCcEEEecCCCcCCchh
Confidence 124556777777777777765321 44567777777777733211 1124456666666666666554432
Q ss_pred HHHHHHhhcCCCCCEEEccCCCCChHHHHHHHHhhhcCccccceeeccCCCCChhHHHHHHHHHHcCCCCcEEEccCCCC
Q 007577 320 NALAKGLEGNKSLRELHLHGNSIGDEGIRALMSGLSSRKGKLAVLDIGNNSISAKGAFHVAEYIKNCKSLLWINLYMNDI 399 (597)
Q Consensus 320 ~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l 399 (597)
+..+++|++|++++|.+.+... ...+++|+.|++++|.++.. .. +..+++|++|++++|.+
T Consensus 173 ------~~~l~~L~~L~l~~n~l~~~~~-------~~~l~~L~~L~l~~n~l~~~-----~~-~~~~~~L~~L~l~~n~l 233 (347)
T 4fmz_A 173 ------IANLTDLYSLSLNYNQIEDISP-------LASLTSLHYFTAYVNQITDI-----TP-VANMTRLNSLKIGNNKI 233 (347)
T ss_dssp ------GGGCTTCSEEECTTSCCCCCGG-------GGGCTTCCEEECCSSCCCCC-----GG-GGGCTTCCEEECCSSCC
T ss_pred ------hccCCCCCEEEccCCccccccc-------ccCCCccceeecccCCCCCC-----ch-hhcCCcCCEEEccCCcc
Confidence 4456666666666666554211 12334566666666665552 11 45556666666666655
Q ss_pred CcHHHHHHHHHHhcCCCccEEEccCCCCChHHHHHHHHHhhcCCCcCEEECcCCCCCHHHHHHHHHHHhhCCCcCEEecC
Q 007577 400 GDEGAEKIADALKQNRTITTIDLGGNNIHSKGASAIARVLKDNSVITSLDLAYNPIGADGAKALSEVLKFHGNINTLKLG 479 (597)
Q Consensus 400 ~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~L~ 479 (597)
++.. . +..+++|++|++++|.++.. ..+..+++|++|++++|.+++. ..+..+++|++|+++
T Consensus 234 ~~~~-----~-~~~l~~L~~L~l~~n~l~~~------~~~~~l~~L~~L~l~~n~l~~~------~~~~~l~~L~~L~L~ 295 (347)
T 4fmz_A 234 TDLS-----P-LANLSQLTWLEIGTNQISDI------NAVKDLTKLKMLNVGSNQISDI------SVLNNLSQLNSLFLN 295 (347)
T ss_dssp CCCG-----G-GTTCTTCCEEECCSSCCCCC------GGGTTCTTCCEEECCSSCCCCC------GGGGGCTTCSEEECC
T ss_pred CCCc-----c-hhcCCCCCEEECCCCccCCC------hhHhcCCCcCEEEccCCccCCC------hhhcCCCCCCEEECc
Confidence 5421 1 44455666666666655542 1234445555555555555442 123444555555555
Q ss_pred CCCCChhHHHHHHHHHhcCCCccEEEccCCCCChHHHHHHHHHHhhcCccccEEEccCCCCC
Q 007577 480 WCQIGASGAEFVADMLRYNNTISILDLRANGLRDEGAKCLAQSFKVVNEALTSIDLAFNEIR 541 (597)
Q Consensus 480 ~n~i~~~~~~~l~~~l~~~~~L~~L~l~~n~i~~~~~~~l~~~l~~~n~~L~~L~Ls~n~i~ 541 (597)
+|.+++..+..+ ..+++|++|++++|.+++... +... ++|++|++++|.|+
T Consensus 296 ~n~l~~~~~~~l----~~l~~L~~L~L~~n~l~~~~~--~~~l-----~~L~~L~l~~N~i~ 346 (347)
T 4fmz_A 296 NNQLGNEDMEVI----GGLTNLTTLFLSQNHITDIRP--LASL-----SKMDSADFANQVIK 346 (347)
T ss_dssp SSCCCGGGHHHH----HTCTTCSEEECCSSSCCCCGG--GGGC-----TTCSEESSSCC---
T ss_pred CCcCCCcChhHh----hccccCCEEEccCCccccccC--hhhh-----hccceeehhhhccc
Confidence 555554433322 233555555555555554322 1111 44555555555543
No 12
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.95 E-value=3.7e-28 Score=247.83 Aligned_cols=305 Identities=23% Similarity=0.256 Sum_probs=242.5
Q ss_pred CCCccEEEeccCCCCHHHHHHHHHHhhhCCCccEEEccCCCCChhHHHHHHHHHhcCCCcCEEEecCCCCChHHHHHHHH
Q 007577 189 NQTAEEVSFAANGITAAGIKAFDGVLQSNIALKTLNLSGNPIGDEGVKCLCDILVDNAGVERLQLSSVDLRDEGAKAIAE 268 (597)
Q Consensus 189 ~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~~~l~~~~~~~l~~ 268 (597)
+++|++|++++|.++... .+..+++|++|++++|.+++... +..+++|++|++++|.+++. .
T Consensus 43 l~~L~~L~l~~~~i~~~~------~~~~~~~L~~L~l~~n~i~~~~~------~~~l~~L~~L~L~~n~i~~~------~ 104 (347)
T 4fmz_A 43 LESITKLVVAGEKVASIQ------GIEYLTNLEYLNLNGNQITDISP------LSNLVKLTNLYIGTNKITDI------S 104 (347)
T ss_dssp HTTCSEEECCSSCCCCCT------TGGGCTTCCEEECCSSCCCCCGG------GTTCTTCCEEECCSSCCCCC------G
T ss_pred cccccEEEEeCCccccch------hhhhcCCccEEEccCCccccchh------hhcCCcCCEEEccCCcccCc------h
Confidence 489999999999987531 25678999999999999987532 56789999999999999874 2
Q ss_pred HHHcCCCccEEEeccCCCChhhHHHHHHHHhhCCCccEEEcCCCCCChHHHHHHHHHhhcCCCCCEEEccCCCCChHHHH
Q 007577 269 LLKNNSILRVLELNNNMIDYSGFTSLAEALLENSTIRSLHLNGNYGGALGANALAKGLEGNKSLRELHLHGNSIGDEGIR 348 (597)
Q Consensus 269 ~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~ 348 (597)
.+..+++|++|++++|.+++... +..+++|++|++++|...... ..+..+++|++|++++|.+.+...
T Consensus 105 ~~~~l~~L~~L~l~~n~i~~~~~------~~~l~~L~~L~l~~n~~~~~~-----~~~~~l~~L~~L~l~~~~~~~~~~- 172 (347)
T 4fmz_A 105 ALQNLTNLRELYLNEDNISDISP------LANLTKMYSLNLGANHNLSDL-----SPLSNMTGLNYLTVTESKVKDVTP- 172 (347)
T ss_dssp GGTTCTTCSEEECTTSCCCCCGG------GTTCTTCCEEECTTCTTCCCC-----GGGTTCTTCCEEECCSSCCCCCGG-
T ss_pred HHcCCCcCCEEECcCCcccCchh------hccCCceeEEECCCCCCcccc-----cchhhCCCCcEEEecCCCcCCchh-
Confidence 36678999999999999875321 667899999999999533221 226789999999999999876432
Q ss_pred HHHHhhhcCccccceeeccCCCCChhHHHHHHHHHHcCCCCcEEEccCCCCCcHHHHHHHHHHhcCCCccEEEccCCCCC
Q 007577 349 ALMSGLSSRKGKLAVLDIGNNSISAKGAFHVAEYIKNCKSLLWINLYMNDIGDEGAEKIADALKQNRTITTIDLGGNNIH 428 (597)
Q Consensus 349 ~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~ 428 (597)
...+++|+.|++++|.+... +. +..+++|+.|++++|.+++... +..+++|++|++++|.++
T Consensus 173 ------~~~l~~L~~L~l~~n~l~~~-----~~-~~~l~~L~~L~l~~n~l~~~~~------~~~~~~L~~L~l~~n~l~ 234 (347)
T 4fmz_A 173 ------IANLTDLYSLSLNYNQIEDI-----SP-LASLTSLHYFTAYVNQITDITP------VANMTRLNSLKIGNNKIT 234 (347)
T ss_dssp ------GGGCTTCSEEECTTSCCCCC-----GG-GGGCTTCCEEECCSSCCCCCGG------GGGCTTCCEEECCSSCCC
T ss_pred ------hccCCCCCEEEccCCccccc-----cc-ccCCCccceeecccCCCCCCch------hhcCCcCCEEEccCCccC
Confidence 13556899999999999873 22 7789999999999999887421 667899999999999998
Q ss_pred hHHHHHHHHHhhcCCCcCEEECcCCCCCHHHHHHHHHHHhhCCCcCEEecCCCCCChhHHHHHHHHHhcCCCccEEEccC
Q 007577 429 SKGASAIARVLKDNSVITSLDLAYNPIGADGAKALSEVLKFHGNINTLKLGWCQIGASGAEFVADMLRYNNTISILDLRA 508 (597)
Q Consensus 429 ~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~ 508 (597)
.... +..+++|++|++++|.+++. ..+..+++|++|++++|.+++. ..+..+++|++|++++
T Consensus 235 ~~~~------~~~l~~L~~L~l~~n~l~~~------~~~~~l~~L~~L~l~~n~l~~~------~~~~~l~~L~~L~L~~ 296 (347)
T 4fmz_A 235 DLSP------LANLSQLTWLEIGTNQISDI------NAVKDLTKLKMLNVGSNQISDI------SVLNNLSQLNSLFLNN 296 (347)
T ss_dssp CCGG------GTTCTTCCEEECCSSCCCCC------GGGTTCTTCCEEECCSSCCCCC------GGGGGCTTCSEEECCS
T ss_pred CCcc------hhcCCCCCEEECCCCccCCC------hhHhcCCCcCEEEccCCccCCC------hhhcCCCCCCEEECcC
Confidence 7532 67789999999999998864 3456789999999999999875 2356789999999999
Q ss_pred CCCChHHHHHHHHHHhhcCccccEEEccCCCCChHHHHHHHHHHHhCCCCceeEEEcccCccch
Q 007577 509 NGLRDEGAKCLAQSFKVVNEALTSIDLAFNEIRDDGAFAIAQALKANEDVAVTSLNLANNFLTK 572 (597)
Q Consensus 509 n~i~~~~~~~l~~~l~~~n~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~N~i~~ 572 (597)
|.+++..+..+..+ ++|++|++++|.+++..+ +.. . .+|++|++++|.|+.
T Consensus 297 n~l~~~~~~~l~~l-----~~L~~L~L~~n~l~~~~~--~~~----l--~~L~~L~l~~N~i~~ 347 (347)
T 4fmz_A 297 NQLGNEDMEVIGGL-----TNLTTLFLSQNHITDIRP--LAS----L--SKMDSADFANQVIKK 347 (347)
T ss_dssp SCCCGGGHHHHHTC-----TTCSEEECCSSSCCCCGG--GGG----C--TTCSEESSSCC----
T ss_pred CcCCCcChhHhhcc-----ccCCEEEccCCccccccC--hhh----h--hccceeehhhhcccC
Confidence 99998887777665 789999999999987544 322 2 349999999999863
No 13
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.95 E-value=5.7e-28 Score=256.52 Aligned_cols=328 Identities=21% Similarity=0.224 Sum_probs=254.1
Q ss_pred HHhcCCCcEEEcCCCCCCHHHHHHHHHHhccCCCccEEEeccCCCCHHHHHHHHHHhhhCCCccEEEccCCCCChhHHHH
Q 007577 158 AKELRAFSSVDMSGRNFGDEGLFFLAESLGYNQTAEEVSFAANGITAAGIKAFDGVLQSNIALKTLNLSGNPIGDEGVKC 237 (597)
Q Consensus 158 ~~~~~~L~~L~Ls~~~l~~~~~~~l~~~l~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~ 237 (597)
+..+++|++|++++|.+.+.. . +..+++|++|++++|.++.... +..+++|++|++++|.+++...
T Consensus 64 ~~~l~~L~~L~Ls~n~l~~~~-----~-~~~l~~L~~L~l~~n~l~~~~~------~~~l~~L~~L~L~~n~l~~~~~-- 129 (466)
T 1o6v_A 64 VEYLNNLTQINFSNNQLTDIT-----P-LKNLTKLVDILMNNNQIADITP------LANLTNLTGLTLFNNQITDIDP-- 129 (466)
T ss_dssp GGGCTTCCEEECCSSCCCCCG-----G-GTTCTTCCEEECCSSCCCCCGG------GTTCTTCCEEECCSSCCCCCGG--
T ss_pred hhhhcCCCEEECCCCccCCch-----h-hhccccCCEEECCCCccccChh------hcCCCCCCEEECCCCCCCCChH--
Confidence 346888999999999887642 2 6778999999999998875421 5678899999999998877531
Q ss_pred HHHHHhcCCCcCEEEecCCCCChHHHHHHHHHHHcCCCccEEEeccCCCChhhHHHHHHHHhhCCCccEEEcCCCCCChH
Q 007577 238 LCDILVDNAGVERLQLSSVDLRDEGAKAIAELLKNNSILRVLELNNNMIDYSGFTSLAEALLENSTIRSLHLNGNYGGAL 317 (597)
Q Consensus 238 l~~~l~~~~~L~~L~Ls~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~ 317 (597)
+..+++|++|++++|.+++.. .+..+++|++|++++ .+.+. ..+..+++|++|++++|.++..
T Consensus 130 ----~~~l~~L~~L~l~~n~l~~~~------~~~~l~~L~~L~l~~-~~~~~------~~~~~l~~L~~L~l~~n~l~~~ 192 (466)
T 1o6v_A 130 ----LKNLTNLNRLELSSNTISDIS------ALSGLTSLQQLSFGN-QVTDL------KPLANLTTLERLDISSNKVSDI 192 (466)
T ss_dssp ----GTTCTTCSEEEEEEEEECCCG------GGTTCTTCSEEEEEE-SCCCC------GGGTTCTTCCEEECCSSCCCCC
T ss_pred ----HcCCCCCCEEECCCCccCCCh------hhccCCcccEeecCC-cccCc------hhhccCCCCCEEECcCCcCCCC
Confidence 566899999999999887632 256678999999974 34321 1266789999999999998765
Q ss_pred HHHHHHHHhhcCCCCCEEEccCCCCChHHHHHHHHhhhcCccccceeeccCCCCChhHHHHHHHHHHcCCCCcEEEccCC
Q 007577 318 GANALAKGLEGNKSLRELHLHGNSIGDEGIRALMSGLSSRKGKLAVLDIGNNSISAKGAFHVAEYIKNCKSLLWINLYMN 397 (597)
Q Consensus 318 ~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n 397 (597)
. .+..+++|++|++++|.+.+... ...+++|+.|++++|.++.. ..+..+++|++|++++|
T Consensus 193 ~------~l~~l~~L~~L~l~~n~l~~~~~-------~~~l~~L~~L~l~~n~l~~~------~~l~~l~~L~~L~l~~n 253 (466)
T 1o6v_A 193 S------VLAKLTNLESLIATNNQISDITP-------LGILTNLDELSLNGNQLKDI------GTLASLTNLTDLDLANN 253 (466)
T ss_dssp G------GGGGCTTCSEEECCSSCCCCCGG-------GGGCTTCCEEECCSSCCCCC------GGGGGCTTCSEEECCSS
T ss_pred h------hhccCCCCCEEEecCCccccccc-------ccccCCCCEEECCCCCcccc------hhhhcCCCCCEEECCCC
Confidence 3 36788999999999998876422 13456899999999998873 34678899999999999
Q ss_pred CCCcHHHHHHHHHHhcCCCccEEEccCCCCChHHHHHHHHHhhcCCCcCEEECcCCCCCHHHHHHHHHHHhhCCCcCEEe
Q 007577 398 DIGDEGAEKIADALKQNRTITTIDLGGNNIHSKGASAIARVLKDNSVITSLDLAYNPIGADGAKALSEVLKFHGNINTLK 477 (597)
Q Consensus 398 ~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~ 477 (597)
.+++.. .+..+++|++|++++|.++.... +..+++|++|++++|.+++... +..+++|++|+
T Consensus 254 ~l~~~~------~~~~l~~L~~L~l~~n~l~~~~~------~~~l~~L~~L~L~~n~l~~~~~------~~~l~~L~~L~ 315 (466)
T 1o6v_A 254 QISNLA------PLSGLTKLTELKLGANQISNISP------LAGLTALTNLELNENQLEDISP------ISNLKNLTYLT 315 (466)
T ss_dssp CCCCCG------GGTTCTTCSEEECCSSCCCCCGG------GTTCTTCSEEECCSSCCSCCGG------GGGCTTCSEEE
T ss_pred ccccch------hhhcCCCCCEEECCCCccCcccc------ccCCCccCeEEcCCCcccCchh------hcCCCCCCEEE
Confidence 988742 16678999999999999987432 6677999999999999876432 56789999999
Q ss_pred cCCCCCChhHHHHHHHHHhcCCCccEEEccCCCCChHHHHHHHHHHhhcCccccEEEccCCCCChHHHHHHHHHHHhCCC
Q 007577 478 LGWCQIGASGAEFVADMLRYNNTISILDLRANGLRDEGAKCLAQSFKVVNEALTSIDLAFNEIRDDGAFAIAQALKANED 557 (597)
Q Consensus 478 L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~n~i~~~~~~~l~~~l~~~n~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~ 557 (597)
+++|.+++..+ +..+++|+.|++++|.+++. ..+..+ ++|+.|++++|++++..+ +.. .
T Consensus 316 L~~n~l~~~~~------~~~l~~L~~L~l~~n~l~~~--~~l~~l-----~~L~~L~l~~n~l~~~~~--~~~----l-- 374 (466)
T 1o6v_A 316 LYFNNISDISP------VSSLTKLQRLFFYNNKVSDV--SSLANL-----TNINWLSAGHNQISDLTP--LAN----L-- 374 (466)
T ss_dssp CCSSCCSCCGG------GGGCTTCCEEECCSSCCCCC--GGGTTC-----TTCCEEECCSSCCCBCGG--GTT----C--
T ss_pred CcCCcCCCchh------hccCccCCEeECCCCccCCc--hhhccC-----CCCCEEeCCCCccCccch--hhc----C--
Confidence 99999887643 46789999999999998875 223322 789999999999987654 322 2
Q ss_pred CceeEEEcccCccchhh
Q 007577 558 VAVTSLNLANNFLTKFG 574 (597)
Q Consensus 558 ~~L~~L~L~~N~i~~~~ 574 (597)
.+|+.|++++|.++...
T Consensus 375 ~~L~~L~l~~n~~~~~p 391 (466)
T 1o6v_A 375 TRITQLGLNDQAWTNAP 391 (466)
T ss_dssp TTCCEEECCCEEEECCC
T ss_pred CCCCEEeccCCcccCCc
Confidence 34999999999988743
No 14
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.95 E-value=5.9e-31 Score=289.29 Aligned_cols=87 Identities=20% Similarity=0.252 Sum_probs=40.5
Q ss_pred hCCCcCEEecCCCCCChhHHHHHHHHHhcCCCccEEEccCCCCChHHHHHHHHHHhhcCccccEEEccCCCCChHHHHHH
Q 007577 469 FHGNINTLKLGWCQIGASGAEFVADMLRYNNTISILDLRANGLRDEGAKCLAQSFKVVNEALTSIDLAFNEIRDDGAFAI 548 (597)
Q Consensus 469 ~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~n~i~~~~~~~l~~~l~~~n~~L~~L~Ls~n~i~~~~~~~l 548 (597)
.+++|++|++++|.++...+.. +..+++|++|++++|.+++..+..+... +.| .|++++|+++...+..+
T Consensus 474 ~l~~L~~L~Ls~n~l~~~~~~~----~~~l~~L~~L~Ls~N~l~~~~~~~l~~l-----~~L-~L~L~~N~l~~~~~~~~ 543 (606)
T 3t6q_A 474 TLGRLEILVLSFCDLSSIDQHA----FTSLKMMNHVDLSHNRLTSSSIEALSHL-----KGI-YLNLASNHISIILPSLL 543 (606)
T ss_dssp GCTTCCEEECTTSCCCEECTTT----TTTCTTCCEEECCSSCCCGGGGGGGTTC-----CSC-EEECCSSCCCCCCGGGH
T ss_pred cCCCccEEECCCCccCccChhh----hccccCCCEEECCCCccCcCChhHhCcc-----ccc-EEECcCCcccccCHhhc
Confidence 3445555555555554432221 2334555555555555555443333322 444 55555555554433333
Q ss_pred HHHHHhCCCCceeEEEcccCccc
Q 007577 549 AQALKANEDVAVTSLNLANNFLT 571 (597)
Q Consensus 549 ~~~l~~~~~~~L~~L~L~~N~i~ 571 (597)
...- +|+.|++++|+++
T Consensus 544 ~~l~------~L~~L~l~~N~~~ 560 (606)
T 3t6q_A 544 PILS------QQRTINLRQNPLD 560 (606)
T ss_dssp HHHH------TSSEEECTTCCEE
T ss_pred ccCC------CCCEEeCCCCCcc
Confidence 3331 2555555555554
No 15
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.95 E-value=9e-32 Score=303.02 Aligned_cols=259 Identities=23% Similarity=0.271 Sum_probs=170.5
Q ss_pred CCccEEEeccCCCChhhHHHHHHHHhhCCCccEEEcCCCCCChHHHHHHHHHhhcCCCCCEEEccCCCCChHHHHHHHHh
Q 007577 274 SILRVLELNNNMIDYSGFTSLAEALLENSTIRSLHLNGNYGGALGANALAKGLEGNKSLRELHLHGNSIGDEGIRALMSG 353 (597)
Q Consensus 274 ~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~ 353 (597)
++|++|++++|.+++ .++..+..+++|++|++++|.++.... ..+..+++|+.|++++|.+.+.. +..
T Consensus 394 ~~L~~L~L~~n~l~~----~~p~~l~~l~~L~~L~Ls~N~l~~~~p----~~l~~l~~L~~L~L~~n~l~~~~----p~~ 461 (768)
T 3rgz_A 394 NTLQELYLQNNGFTG----KIPPTLSNCSELVSLHLSFNYLSGTIP----SSLGSLSKLRDLKLWLNMLEGEI----PQE 461 (768)
T ss_dssp CCCCEEECCSSEEEE----ECCGGGGGCTTCCEEECCSSEEESCCC----GGGGGCTTCCEEECCSSCCCSCC----CGG
T ss_pred CCccEEECCCCcccc----ccCHHHhcCCCCCEEECcCCcccCccc----HHHhcCCCCCEEECCCCcccCcC----CHH
Confidence 456666666665542 234455667777778877776653222 34567777888888887776431 111
Q ss_pred hhcCccccceeeccCCCCChhHHHHHHHHHHcCCCCcEEEccCCCCCcHHHHHHHHHHhcCCCccEEEccCCCCChHHHH
Q 007577 354 LSSRKGKLAVLDIGNNSISAKGAFHVAEYIKNCKSLLWINLYMNDIGDEGAEKIADALKQNRTITTIDLGGNNIHSKGAS 433 (597)
Q Consensus 354 l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~ 433 (597)
+ ..+++|+.|++++|.++.. ++..+..+++|++|+|++|.+++. ++..+..+++|++|+|++|.++..
T Consensus 462 ~-~~l~~L~~L~L~~N~l~~~----~p~~l~~l~~L~~L~L~~N~l~~~----~p~~~~~l~~L~~L~L~~N~l~~~--- 529 (768)
T 3rgz_A 462 L-MYVKTLETLILDFNDLTGE----IPSGLSNCTNLNWISLSNNRLTGE----IPKWIGRLENLAILKLSNNSFSGN--- 529 (768)
T ss_dssp G-GGCTTCCEEECCSSCCCSC----CCGGGGGCTTCCEEECCSSCCCSC----CCGGGGGCTTCCEEECCSSCCEEE---
T ss_pred H-cCCCCceEEEecCCcccCc----CCHHHhcCCCCCEEEccCCccCCc----CChHHhcCCCCCEEECCCCcccCc---
Confidence 2 2445788888888887752 556677788888888888877754 455566778888888888877643
Q ss_pred HHHHHhhcCCCcCEEECcCCCCCHHHHHHHHH------------------------------------------------
Q 007577 434 AIARVLKDNSVITSLDLAYNPIGADGAKALSE------------------------------------------------ 465 (597)
Q Consensus 434 ~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~------------------------------------------------ 465 (597)
++..+..+++|++|++++|.++..-...+..
T Consensus 530 -~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 608 (768)
T 3rgz_A 530 -IPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLS 608 (768)
T ss_dssp -CCGGGGGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGG
T ss_pred -CCHHHcCCCCCCEEECCCCccCCcCChHHhcccchhhhhccccccccccccccccccccccccccccccccchhhhccc
Confidence 3344666788888888888654211111100
Q ss_pred ------------------HHhhCCCcCEEecCCCCCChhHHHHHHHHHhcCCCccEEEccCCCCChHHHHHHHHHHhhcC
Q 007577 466 ------------------VLKFHGNINTLKLGWCQIGASGAEFVADMLRYNNTISILDLRANGLRDEGAKCLAQSFKVVN 527 (597)
Q Consensus 466 ------------------~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~n~i~~~~~~~l~~~l~~~n 527 (597)
.+..+++|+.|++++|+++...+. .+..+++|+.|++++|.++...+..+..+
T Consensus 609 ~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~----~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L----- 679 (768)
T 3rgz_A 609 TRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPK----EIGSMPYLFILNLGHNDISGSIPDEVGDL----- 679 (768)
T ss_dssp GTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCCCG----GGGGCTTCCEEECCSSCCCSCCCGGGGGC-----
T ss_pred cccccccccceecccCchhhhccccccEEECcCCcccccCCH----HHhccccCCEEeCcCCccCCCCChHHhCC-----
Confidence 112246788888888887755333 34556888888888888886655555554
Q ss_pred ccccEEEccCCCCChHHHHHHHHHHHhCCCCceeEEEcccCccch
Q 007577 528 EALTSIDLAFNEIRDDGAFAIAQALKANEDVAVTSLNLANNFLTK 572 (597)
Q Consensus 528 ~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~N~i~~ 572 (597)
++|+.|||++|+++...+..+... ..|+.|+|++|+++.
T Consensus 680 ~~L~~LdLs~N~l~g~ip~~l~~l------~~L~~L~ls~N~l~g 718 (768)
T 3rgz_A 680 RGLNILDLSSNKLDGRIPQAMSAL------TMLTEIDLSNNNLSG 718 (768)
T ss_dssp TTCCEEECCSSCCEECCCGGGGGC------CCCSEEECCSSEEEE
T ss_pred CCCCEEECCCCcccCcCChHHhCC------CCCCEEECcCCcccc
Confidence 678888888888887666666544 348888888888764
No 16
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.94 E-value=1e-31 Score=302.59 Aligned_cols=373 Identities=21% Similarity=0.193 Sum_probs=233.1
Q ss_pred HHHHHhcCCCcEEEcCCCCCCHHHHHHHHHHhccCCCccEEEeccCCCCHHHHHHHHHHhhh-CCCccEEEccCCCCChh
Q 007577 155 NEFAKELRAFSSVDMSGRNFGDEGLFFLAESLGYNQTAEEVSFAANGITAAGIKAFDGVLQS-NIALKTLNLSGNPIGDE 233 (597)
Q Consensus 155 ~~~~~~~~~L~~L~Ls~~~l~~~~~~~l~~~l~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~-~~~L~~L~Ls~n~l~~~ 233 (597)
...+..+++|++|++++|.+... ++. ..+++|++|++++|.++.. ++..+.. +++|++|++++|.+...
T Consensus 240 ~~~l~~l~~L~~L~Ls~n~l~~~----~~~--~~l~~L~~L~L~~n~l~~~----ip~~~~~~~~~L~~L~Ls~n~l~~~ 309 (768)
T 3rgz_A 240 SRAISTCTELKLLNISSNQFVGP----IPP--LPLKSLQYLSLAENKFTGE----IPDFLSGACDTLTGLDLSGNHFYGA 309 (768)
T ss_dssp HHHTTTCSSCCEEECCSSCCEES----CCC--CCCTTCCEEECCSSEEEES----CCCCSCTTCTTCSEEECCSSEEEEC
T ss_pred cHHHhcCCCCCEEECCCCcccCc----cCc--cccCCCCEEECcCCccCCc----cCHHHHhhcCcCCEEECcCCcCCCc
Confidence 34566789999999999987532 111 1456777777777755421 1111112 35566666666655432
Q ss_pred HHHHHHHHHhcCCCcCEEEecCCCCChHHHHHHH-HHHHcCCCccEEEeccCCCChhhHHHHH-----------------
Q 007577 234 GVKCLCDILVDNAGVERLQLSSVDLRDEGAKAIA-ELLKNNSILRVLELNNNMIDYSGFTSLA----------------- 295 (597)
Q Consensus 234 ~~~~l~~~l~~~~~L~~L~Ls~~~l~~~~~~~l~-~~l~~~~~L~~L~Ls~n~i~~~~~~~l~----------------- 295 (597)
++..+..+++|++|++++|.++.. ++ ..+..+++|++|++++|.+++.....+.
T Consensus 310 ----~p~~~~~l~~L~~L~L~~n~l~~~----ip~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~ 381 (768)
T 3rgz_A 310 ----VPPFFGSCSLLESLALSSNNFSGE----LPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFS 381 (768)
T ss_dssp ----CCGGGGGCTTCCEEECCSSEEEEE----CCHHHHTTCTTCCEEECCSSEEEECCCTTHHHHTTTCSEEECCSSEEE
T ss_pred ----cchHHhcCCCccEEECCCCcccCc----CCHHHHhcCCCCCEEeCcCCccCccccHHHHhhhcCCcEEEccCCCcC
Confidence 223344456666666666655421 11 1233445566666655554321111111
Q ss_pred ----HHHhh--CCCccEEEcCCCCCChHHHHHHHHHhhcCCCCCEEEccCCCCChHHHHHHHHhhhcCccccceeeccCC
Q 007577 296 ----EALLE--NSTIRSLHLNGNYGGALGANALAKGLEGNKSLRELHLHGNSIGDEGIRALMSGLSSRKGKLAVLDIGNN 369 (597)
Q Consensus 296 ----~~l~~--~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~Ls~n 369 (597)
..+.. +++|++|++++|.++.. ++..+..+++|++|++++|.+++... ..+ ..+++|+.|++++|
T Consensus 382 ~~~~~~~~~~~~~~L~~L~L~~n~l~~~----~p~~l~~l~~L~~L~Ls~N~l~~~~p----~~l-~~l~~L~~L~L~~n 452 (768)
T 3rgz_A 382 GPILPNLCQNPKNTLQELYLQNNGFTGK----IPPTLSNCSELVSLHLSFNYLSGTIP----SSL-GSLSKLRDLKLWLN 452 (768)
T ss_dssp EECCTTTTCSTTCCCCEEECCSSEEEEE----CCGGGGGCTTCCEEECCSSEEESCCC----GGG-GGCTTCCEEECCSS
T ss_pred CCcChhhhhcccCCccEEECCCCccccc----cCHHHhcCCCCCEEECcCCcccCccc----HHH-hcCCCCCEEECCCC
Confidence 11111 44566666666655432 22446677888888888887654311 112 34457888888888
Q ss_pred CCChhHHHHHHHHHHcCCCCcEEEccCCCCCcHHHHHHHHHHhcCCCccEEEccCCCCChHHHHHHHHHhhcCCCcCEEE
Q 007577 370 SISAKGAFHVAEYIKNCKSLLWINLYMNDIGDEGAEKIADALKQNRTITTIDLGGNNIHSKGASAIARVLKDNSVITSLD 449 (597)
Q Consensus 370 ~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~ 449 (597)
.++.. ++..+..+++|++|++++|.+++. ++..+..+++|++|++++|+++.. ++..+..+++|++|+
T Consensus 453 ~l~~~----~p~~~~~l~~L~~L~L~~N~l~~~----~p~~l~~l~~L~~L~L~~N~l~~~----~p~~~~~l~~L~~L~ 520 (768)
T 3rgz_A 453 MLEGE----IPQELMYVKTLETLILDFNDLTGE----IPSGLSNCTNLNWISLSNNRLTGE----IPKWIGRLENLAILK 520 (768)
T ss_dssp CCCSC----CCGGGGGCTTCCEEECCSSCCCSC----CCGGGGGCTTCCEEECCSSCCCSC----CCGGGGGCTTCCEEE
T ss_pred cccCc----CCHHHcCCCCceEEEecCCcccCc----CCHHHhcCCCCCEEEccCCccCCc----CChHHhcCCCCCEEE
Confidence 88763 566677888888888888888754 455677788888888888888754 344466678899999
Q ss_pred CcCCCCCHHHHHHHHHHHhhCCCcCEEecCCCCCChhHHHHHHH------------------------------------
Q 007577 450 LAYNPIGADGAKALSEVLKFHGNINTLKLGWCQIGASGAEFVAD------------------------------------ 493 (597)
Q Consensus 450 Ls~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~------------------------------------ 493 (597)
|++|.++.. +...+..+++|++|++++|.++..-+..+..
T Consensus 521 L~~N~l~~~----~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 596 (768)
T 3rgz_A 521 LSNNSFSGN----IPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEF 596 (768)
T ss_dssp CCSSCCEEE----CCGGGGGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEEC
T ss_pred CCCCcccCc----CCHHHcCCCCCCEEECCCCccCCcCChHHhcccchhhhhcccccccccccccccccccccccccccc
Confidence 998887643 2344566788999999988765322221111
Q ss_pred ------------------------------HHhcCCCccEEEccCCCCChHHHHHHHHHHhhcCccccEEEccCCCCChH
Q 007577 494 ------------------------------MLRYNNTISILDLRANGLRDEGAKCLAQSFKVVNEALTSIDLAFNEIRDD 543 (597)
Q Consensus 494 ------------------------------~l~~~~~L~~L~l~~n~i~~~~~~~l~~~l~~~n~~L~~L~Ls~n~i~~~ 543 (597)
.+..+++|+.||+++|.++...+..+..+ +.|+.|+|++|.++..
T Consensus 597 ~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l-----~~L~~L~Ls~N~l~g~ 671 (768)
T 3rgz_A 597 QGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSM-----PYLFILNLGHNDISGS 671 (768)
T ss_dssp TTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCCCGGGGGC-----TTCCEEECCSSCCCSC
T ss_pred ccccchhhhccccccccccccceecccCchhhhccccccEEECcCCcccccCCHHHhcc-----ccCCEEeCcCCccCCC
Confidence 12234678899999998887655555554 7799999999999877
Q ss_pred HHHHHHHHHHhCCCCceeEEEcccCccchhhHHHHHHH
Q 007577 544 GAFAIAQALKANEDVAVTSLNLANNFLTKFGQSALTDA 581 (597)
Q Consensus 544 ~~~~l~~~l~~~~~~~L~~L~L~~N~i~~~~~~~l~~~ 581 (597)
.+..+... .+|+.|||++|+++......+..+
T Consensus 672 ip~~l~~L------~~L~~LdLs~N~l~g~ip~~l~~l 703 (768)
T 3rgz_A 672 IPDEVGDL------RGLNILDLSSNKLDGRIPQAMSAL 703 (768)
T ss_dssp CCGGGGGC------TTCCEEECCSSCCEECCCGGGGGC
T ss_pred CChHHhCC------CCCCEEECCCCcccCcCChHHhCC
Confidence 77777655 349999999999987666655443
No 17
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.94 E-value=1.3e-27 Score=253.80 Aligned_cols=327 Identities=21% Similarity=0.233 Sum_probs=261.3
Q ss_pred hcCCCcEEEcCCCCCCHHHHHHHHHHhccCCCccEEEeccCCCCHHHHHHHHHHhhhCCCccEEEccCCCCChhHHHHHH
Q 007577 160 ELRAFSSVDMSGRNFGDEGLFFLAESLGYNQTAEEVSFAANGITAAGIKAFDGVLQSNIALKTLNLSGNPIGDEGVKCLC 239 (597)
Q Consensus 160 ~~~~L~~L~Ls~~~l~~~~~~~l~~~l~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~ 239 (597)
.++++++|+++++.+... . .+..+++|++|++++|.++... . +..+++|++|++++|.+.....
T Consensus 44 ~l~~l~~L~l~~~~i~~l-----~-~~~~l~~L~~L~Ls~n~l~~~~-----~-~~~l~~L~~L~l~~n~l~~~~~---- 107 (466)
T 1o6v_A 44 DLDQVTTLQADRLGIKSI-----D-GVEYLNNLTQINFSNNQLTDIT-----P-LKNLTKLVDILMNNNQIADITP---- 107 (466)
T ss_dssp HHHTCCEEECCSSCCCCC-----T-TGGGCTTCCEEECCSSCCCCCG-----G-GTTCTTCCEEECCSSCCCCCGG----
T ss_pred HhccccEEecCCCCCccC-----c-chhhhcCCCEEECCCCccCCch-----h-hhccccCCEEECCCCccccChh----
Confidence 357899999999988753 2 3677899999999999988642 1 6788999999999999987532
Q ss_pred HHHhcCCCcCEEEecCCCCChHHHHHHHHHHHcCCCccEEEeccCCCChhhHHHHHHHHhhCCCccEEEcCCCCCChHHH
Q 007577 240 DILVDNAGVERLQLSSVDLRDEGAKAIAELLKNNSILRVLELNNNMIDYSGFTSLAEALLENSTIRSLHLNGNYGGALGA 319 (597)
Q Consensus 240 ~~l~~~~~L~~L~Ls~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~ 319 (597)
+..+++|++|++++|.+++... +..+++|++|++++|.+++.. .+..+++|++|++++ .+....
T Consensus 108 --~~~l~~L~~L~L~~n~l~~~~~------~~~l~~L~~L~l~~n~l~~~~------~~~~l~~L~~L~l~~-~~~~~~- 171 (466)
T 1o6v_A 108 --LANLTNLTGLTLFNNQITDIDP------LKNLTNLNRLELSSNTISDIS------ALSGLTSLQQLSFGN-QVTDLK- 171 (466)
T ss_dssp --GTTCTTCCEEECCSSCCCCCGG------GTTCTTCSEEEEEEEEECCCG------GGTTCTTCSEEEEEE-SCCCCG-
T ss_pred --hcCCCCCCEEECCCCCCCCChH------HcCCCCCCEEECCCCccCCCh------hhccCCcccEeecCC-cccCch-
Confidence 6678999999999999987521 677899999999999887532 367899999999974 343322
Q ss_pred HHHHHHhhcCCCCCEEEccCCCCChHHHHHHHHhhhcCccccceeeccCCCCChhHHHHHHHHHHcCCCCcEEEccCCCC
Q 007577 320 NALAKGLEGNKSLRELHLHGNSIGDEGIRALMSGLSSRKGKLAVLDIGNNSISAKGAFHVAEYIKNCKSLLWINLYMNDI 399 (597)
Q Consensus 320 ~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l 399 (597)
.+..+++|++|++++|.+++.. .+ ..+++|+.|++++|.++.. .. +..+++|++|++++|.+
T Consensus 172 -----~~~~l~~L~~L~l~~n~l~~~~------~l-~~l~~L~~L~l~~n~l~~~-----~~-~~~l~~L~~L~l~~n~l 233 (466)
T 1o6v_A 172 -----PLANLTTLERLDISSNKVSDIS------VL-AKLTNLESLIATNNQISDI-----TP-LGILTNLDELSLNGNQL 233 (466)
T ss_dssp -----GGTTCTTCCEEECCSSCCCCCG------GG-GGCTTCSEEECCSSCCCCC-----GG-GGGCTTCCEEECCSSCC
T ss_pred -----hhccCCCCCEEECcCCcCCCCh------hh-ccCCCCCEEEecCCccccc-----cc-ccccCCCCEEECCCCCc
Confidence 2678999999999999987642 12 3556999999999999873 12 67799999999999999
Q ss_pred CcHHHHHHHHHHhcCCCccEEEccCCCCChHHHHHHHHHhhcCCCcCEEECcCCCCCHHHHHHHHHHHhhCCCcCEEecC
Q 007577 400 GDEGAEKIADALKQNRTITTIDLGGNNIHSKGASAIARVLKDNSVITSLDLAYNPIGADGAKALSEVLKFHGNINTLKLG 479 (597)
Q Consensus 400 ~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~L~ 479 (597)
++. ..+..+++|++|++++|.++.... +..+++|++|++++|.++.... +..+++|++|+++
T Consensus 234 ~~~------~~l~~l~~L~~L~l~~n~l~~~~~------~~~l~~L~~L~l~~n~l~~~~~------~~~l~~L~~L~L~ 295 (466)
T 1o6v_A 234 KDI------GTLASLTNLTDLDLANNQISNLAP------LSGLTKLTELKLGANQISNISP------LAGLTALTNLELN 295 (466)
T ss_dssp CCC------GGGGGCTTCSEEECCSSCCCCCGG------GTTCTTCSEEECCSSCCCCCGG------GTTCTTCSEEECC
T ss_pred ccc------hhhhcCCCCCEEECCCCccccchh------hhcCCCCCEEECCCCccCcccc------ccCCCccCeEEcC
Confidence 874 246678999999999999987432 6778999999999999886432 5678999999999
Q ss_pred CCCCChhHHHHHHHHHhcCCCccEEEccCCCCChHHHHHHHHHHhhcCccccEEEccCCCCChHHHHHHHHHHHhCCCCc
Q 007577 480 WCQIGASGAEFVADMLRYNNTISILDLRANGLRDEGAKCLAQSFKVVNEALTSIDLAFNEIRDDGAFAIAQALKANEDVA 559 (597)
Q Consensus 480 ~n~i~~~~~~~l~~~l~~~~~L~~L~l~~n~i~~~~~~~l~~~l~~~n~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~~ 559 (597)
+|.+++..+ +..+++|+.|++++|.+++... +.. .++|++|++++|.+++. ..+ ... .+
T Consensus 296 ~n~l~~~~~------~~~l~~L~~L~L~~n~l~~~~~--~~~-----l~~L~~L~l~~n~l~~~--~~l----~~l--~~ 354 (466)
T 1o6v_A 296 ENQLEDISP------ISNLKNLTYLTLYFNNISDISP--VSS-----LTKLQRLFFYNNKVSDV--SSL----ANL--TN 354 (466)
T ss_dssp SSCCSCCGG------GGGCTTCSEEECCSSCCSCCGG--GGG-----CTTCCEEECCSSCCCCC--GGG----TTC--TT
T ss_pred CCcccCchh------hcCCCCCCEEECcCCcCCCchh--hcc-----CccCCEeECCCCccCCc--hhh----ccC--CC
Confidence 999987543 5678999999999999988644 222 27899999999999875 223 223 35
Q ss_pred eeEEEcccCccchhhH
Q 007577 560 VTSLNLANNFLTKFGQ 575 (597)
Q Consensus 560 L~~L~L~~N~i~~~~~ 575 (597)
|+.|++++|.+++...
T Consensus 355 L~~L~l~~n~l~~~~~ 370 (466)
T 1o6v_A 355 INWLSAGHNQISDLTP 370 (466)
T ss_dssp CCEEECCSSCCCBCGG
T ss_pred CCEEeCCCCccCccch
Confidence 9999999999987654
No 18
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.94 E-value=5.1e-29 Score=268.67 Aligned_cols=367 Identities=15% Similarity=0.133 Sum_probs=206.6
Q ss_pred HHHhcCCCcEEEcCCCCCCHHHHHHHHHHhccCCCccEEEeccCCCCHHHHHHHHHHhhhCCCccEEEccCCCCChhHHH
Q 007577 157 FAKELRAFSSVDMSGRNFGDEGLFFLAESLGYNQTAEEVSFAANGITAAGIKAFDGVLQSNIALKTLNLSGNPIGDEGVK 236 (597)
Q Consensus 157 ~~~~~~~L~~L~Ls~~~l~~~~~~~l~~~l~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~ 236 (597)
.+..+++|++|++++|.+... .+..+..+++|++|++++|+++.. +.. .+++|++|++++|.++...
T Consensus 40 ~~~~l~~L~~L~Ls~n~l~~~----~~~~~~~l~~L~~L~Ls~N~l~~l-----p~~--~l~~L~~L~L~~N~l~~~~-- 106 (520)
T 2z7x_B 40 DILSLSKLRILIISHNRIQYL----DISVFKFNQELEYLDLSHNKLVKI-----SCH--PTVNLKHLDLSFNAFDALP-- 106 (520)
T ss_dssp HHTTCTTCCEEECCSSCCCEE----EGGGGTTCTTCCEEECCSSCCCEE-----ECC--CCCCCSEEECCSSCCSSCC--
T ss_pred hccccccccEEecCCCccCCc----ChHHhhcccCCCEEecCCCceeec-----Ccc--ccCCccEEeccCCcccccc--
Confidence 445667777777777777643 134556677777777777776632 111 4567777777777765421
Q ss_pred HHHHHHhcCCCcCEEEecCCCCChHHHHHHHHHHHcCCCc--cEEEeccCCC--ChhhHHHHHH----------------
Q 007577 237 CLCDILVDNAGVERLQLSSVDLRDEGAKAIAELLKNNSIL--RVLELNNNMI--DYSGFTSLAE---------------- 296 (597)
Q Consensus 237 ~l~~~l~~~~~L~~L~Ls~~~l~~~~~~~l~~~l~~~~~L--~~L~Ls~n~i--~~~~~~~l~~---------------- 296 (597)
++..+..+++|++|++++|.++.. .+..+++| ++|++++|.+ +......+..
T Consensus 107 -~p~~~~~l~~L~~L~L~~n~l~~~-------~~~~l~~L~L~~L~l~~n~l~~~~~~~~~l~~l~~~~l~l~l~~n~~~ 178 (520)
T 2z7x_B 107 -ICKEFGNMSQLKFLGLSTTHLEKS-------SVLPIAHLNISKVLLVLGETYGEKEDPEGLQDFNTESLHIVFPTNKEF 178 (520)
T ss_dssp -CCGGGGGCTTCCEEEEEESSCCGG-------GGGGGTTSCEEEEEEEECTTTTSSCCTTTTTTCCEEEEEEECCSSSCC
T ss_pred -chhhhccCCcceEEEecCcccchh-------hccccccceeeEEEeecccccccccccccccccccceEEEEeccCcch
Confidence 223444567777777777777652 12333555 7777777766 2111111100
Q ss_pred ------HHhhCCCccEEEcCCCCC--ChHHHHHHHHHhhcCCCCCEEEccCCCCChHHHHHHHHhhhcCccccceeeccC
Q 007577 297 ------ALLENSTIRSLHLNGNYG--GALGANALAKGLEGNKSLRELHLHGNSIGDEGIRALMSGLSSRKGKLAVLDIGN 368 (597)
Q Consensus 297 ------~l~~~~~L~~L~L~~n~i--~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~Ls~ 368 (597)
.+..+++|+.|++++|.. ...........+..+++|+.|++++|.+++..+..+..... .++|+.|++++
T Consensus 179 ~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~--~~~L~~L~l~~ 256 (520)
T 2z7x_B 179 HFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFIRILQLVW--HTTVWYFSISN 256 (520)
T ss_dssp CCCCCCCCTTCSEEEECCEEECCSTTTTHHHHHHHHGGGGCTTCCEEEEEEEEEEHHHHHHHHHHHH--TSSCSEEEEEE
T ss_pred hhhhhhhhhcccceeeccccccccccccceeecchhhhccccchhhccccccccCHHHHHHHHHHhh--hCcccEEEeec
Confidence 001123333333333320 00001111123455555555655555555544444333221 11344444444
Q ss_pred CCCChh----------------------------HHHHHHHH---------------------HHcCCCCcEEEccCCCC
Q 007577 369 NSISAK----------------------------GAFHVAEY---------------------IKNCKSLLWINLYMNDI 399 (597)
Q Consensus 369 n~l~~~----------------------------~~~~l~~~---------------------l~~~~~L~~L~Ls~n~l 399 (597)
|.++.. ....+... ...+++|++|++++|.+
T Consensus 257 n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~~~p~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~l~~L~~L~Ls~n~l 336 (520)
T 2z7x_B 257 VKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYIYEIFSNMNIKNFTVSGTRMVHMLCPSKISPFLHLDFSNNLL 336 (520)
T ss_dssp EEEESCCCCCCCCCCSCCCCEEEEEEEEECCCCSCTHHHHHHHHTCCCSEEEEESSCCCCCCCCSSCCCCCEEECCSSCC
T ss_pred ccccCccccchhhcccccCceeEeccccccceecchhhhhcccccCceeEEEcCCCccccccchhhCCcccEEEeECCcc
Confidence 332210 00011111 14677888888888888
Q ss_pred CcHHHHHHHHHHhcCCCccEEEccCCCCChHHHHHHHHHhhcCCCcCEEECcCCCCCHHHHHHHHHHHhhCCCcCEEecC
Q 007577 400 GDEGAEKIADALKQNRTITTIDLGGNNIHSKGASAIARVLKDNSVITSLDLAYNPIGADGAKALSEVLKFHGNINTLKLG 479 (597)
Q Consensus 400 ~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~L~ 479 (597)
++. ++..+..+++|++|++++|+++.. ..++..+..+++|++|++++|.++..... ..+..+++|++|+++
T Consensus 337 ~~~----~~~~~~~l~~L~~L~L~~N~l~~l--~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~---~~~~~l~~L~~L~Ls 407 (520)
T 2z7x_B 337 TDT----VFENCGHLTELETLILQMNQLKEL--SKIAEMTTQMKSLQQLDISQNSVSYDEKK---GDCSWTKSLLSLNMS 407 (520)
T ss_dssp CTT----TTTTCCCCSSCCEEECCSSCCCBH--HHHHHHHTTCTTCCEEECCSSCCBCCGGG---CSCCCCTTCCEEECC
T ss_pred Chh----hhhhhccCCCCCEEEccCCccCcc--ccchHHHhhCCCCCEEECCCCcCCccccc---chhccCccCCEEECc
Confidence 764 344556778888888888888863 23455567778888888888887652111 123445788888888
Q ss_pred CCCCChhHHHHHHHHHhcCCCccEEEccCCCCChHHHHHHHHHHhhcCccccEEEccCCCCChHHHHHHHHHHHhCCCCc
Q 007577 480 WCQIGASGAEFVADMLRYNNTISILDLRANGLRDEGAKCLAQSFKVVNEALTSIDLAFNEIRDDGAFAIAQALKANEDVA 559 (597)
Q Consensus 480 ~n~i~~~~~~~l~~~l~~~~~L~~L~l~~n~i~~~~~~~l~~~l~~~n~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~~ 559 (597)
+|.+++..+..+ .++|+.|++++|.|+... ..+... ++|++|++++|+++......+.. . .+
T Consensus 408 ~N~l~~~~~~~l------~~~L~~L~Ls~N~l~~ip-~~~~~l-----~~L~~L~L~~N~l~~l~~~~~~~----l--~~ 469 (520)
T 2z7x_B 408 SNILTDTIFRCL------PPRIKVLDLHSNKIKSIP-KQVVKL-----EALQELNVASNQLKSVPDGIFDR----L--TS 469 (520)
T ss_dssp SSCCCGGGGGSC------CTTCCEEECCSSCCCCCC-GGGGGC-----TTCCEEECCSSCCCCCCTTTTTT----C--TT
T ss_pred CCCCCcchhhhh------cccCCEEECCCCcccccc-hhhhcC-----CCCCEEECCCCcCCccCHHHhcc----C--Cc
Confidence 888875433222 168999999999888432 222222 77999999999888533322222 2 34
Q ss_pred eeEEEcccCccchh
Q 007577 560 VTSLNLANNFLTKF 573 (597)
Q Consensus 560 L~~L~L~~N~i~~~ 573 (597)
|+.|++++|+++-.
T Consensus 470 L~~L~l~~N~~~c~ 483 (520)
T 2z7x_B 470 LQKIWLHTNPWDCS 483 (520)
T ss_dssp CCEEECCSSCBCCC
T ss_pred ccEEECcCCCCccc
Confidence 99999999998753
No 19
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.94 E-value=1.9e-29 Score=267.29 Aligned_cols=368 Identities=17% Similarity=0.118 Sum_probs=256.6
Q ss_pred CCCcEEEcCCCCCCHHHHHHHHHHhccCCCccEEEeccCCCCHHHHHHHHHHhhhCCCccEEEccCCCCChhHHHHHHHH
Q 007577 162 RAFSSVDMSGRNFGDEGLFFLAESLGYNQTAEEVSFAANGITAAGIKAFDGVLQSNIALKTLNLSGNPIGDEGVKCLCDI 241 (597)
Q Consensus 162 ~~L~~L~Ls~~~l~~~~~~~l~~~l~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~ 241 (597)
+++++|+|++|.+... .+..+..+++|++|++++|.+... .-...+..+++|++|++++|.+.... +..
T Consensus 30 ~~l~~L~Ls~n~i~~~----~~~~~~~l~~L~~L~L~~n~~~~~---i~~~~~~~l~~L~~L~Ls~n~l~~~~----~~~ 98 (455)
T 3v47_A 30 AHVNYVDLSLNSIAEL----NETSFSRLQDLQFLKVEQQTPGLV---IRNNTFRGLSSLIILKLDYNQFLQLE----TGA 98 (455)
T ss_dssp TTCCEEECCSSCCCEE----CTTTTSSCTTCCEEECCCCSTTCE---ECTTTTTTCTTCCEEECTTCTTCEEC----TTT
T ss_pred CccCEEEecCCccCcC----ChhHhccCccccEEECcCCcccce---ECcccccccccCCEEeCCCCccCccC----hhh
Confidence 6799999999999764 245678899999999999987421 01234567889999999999997652 344
Q ss_pred HhcCCCcCEEEecCCCCChHHHHHHHHHHHcCCCccEEEeccCCCChhhHHHHHHHHhhCCCccEEEcCCCCCChHHHHH
Q 007577 242 LVDNAGVERLQLSSVDLRDEGAKAIAELLKNNSILRVLELNNNMIDYSGFTSLAEALLENSTIRSLHLNGNYGGALGANA 321 (597)
Q Consensus 242 l~~~~~L~~L~Ls~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~ 321 (597)
+..+++|++|++++|.+++..... ..+..+++|++|++++|.++..... ..+..+++|++|++++|.++......
T Consensus 99 ~~~l~~L~~L~L~~n~l~~~~~~~--~~~~~l~~L~~L~L~~n~l~~~~~~---~~~~~l~~L~~L~L~~n~l~~~~~~~ 173 (455)
T 3v47_A 99 FNGLANLEVLTLTQCNLDGAVLSG--NFFKPLTSLEMLVLRDNNIKKIQPA---SFFLNMRRFHVLDLTFNKVKSICEED 173 (455)
T ss_dssp TTTCTTCCEEECTTSCCBTHHHHS--STTTTCTTCCEEECCSSBCCSCCCC---GGGGGCTTCCEEECTTCCBSCCCTTT
T ss_pred ccCcccCCEEeCCCCCCCccccCc--ccccCcccCCEEECCCCccCccCcc---cccCCCCcccEEeCCCCcccccChhh
Confidence 556799999999999998742211 2256679999999999998653211 12567899999999999887654422
Q ss_pred HHHHhhcC--CCCCEEEccCCCCChHHHHHHH----HhhhcCccccceeeccCCCCChhHHHHHHHHHHcCCCCcEEEcc
Q 007577 322 LAKGLEGN--KSLRELHLHGNSIGDEGIRALM----SGLSSRKGKLAVLDIGNNSISAKGAFHVAEYIKNCKSLLWINLY 395 (597)
Q Consensus 322 l~~~l~~~--~~L~~L~Ls~n~i~~~~~~~l~----~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~Ls 395 (597)
+..+ ++|+.|++++|.+.+.....+. ..+ ...++|+.|++++|.++......+...+ ..++|+.|+++
T Consensus 174 ----l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~-~~~~~L~~L~Ls~n~l~~~~~~~~~~~~-~~~~L~~L~l~ 247 (455)
T 3v47_A 174 ----LLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNP-FKNTSITTLDLSGNGFKESMAKRFFDAI-AGTKIQSLILS 247 (455)
T ss_dssp ----SGGGTTCEEEEEECTTCBCTTCSTTCTTHHHHCCT-TTTCEEEEEECTTSCCCHHHHHHHHHHT-TTCCEEEEECT
T ss_pred ----hhccccccccccccccCcccccchhhccccccccc-cccceeeeEecCCCcccccchhhhhccc-cccceeeEeec
Confidence 2222 6789999999987653211111 011 1335899999999999985333332221 23789999998
Q ss_pred CCCCCcHHHHH------HHHHHh--cCCCccEEEccCCCCChHHHHHHHHHhhcCCCcCEEECcCCCCCHHHHHHHHHHH
Q 007577 396 MNDIGDEGAEK------IADALK--QNRTITTIDLGGNNIHSKGASAIARVLKDNSVITSLDLAYNPIGADGAKALSEVL 467 (597)
Q Consensus 396 ~n~l~~~~~~~------l~~~l~--~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l 467 (597)
+|.+....... ....+. ..++|++|++++|.++.. +...+..+++|++|++++|.+++... ..+
T Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~----~~~~~~~l~~L~~L~Ls~n~l~~~~~----~~~ 319 (455)
T 3v47_A 248 NSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFAL----LKSVFSHFTDLEQLTLAQNEINKIDD----NAF 319 (455)
T ss_dssp TCTTTSCCTTCCSSCCCCTTTTGGGTTSCCCEEECCSSCCCEE----CTTTTTTCTTCCEEECTTSCCCEECT----TTT
T ss_pred cccccccccchhhhccCcccccccccccCceEEEecCcccccc----chhhcccCCCCCEEECCCCcccccCh----hHh
Confidence 88543210000 000011 136899999999998875 33446667999999999998876432 234
Q ss_pred hhCCCcCEEecCCCCCChhHHHHHHHHHhcCCCccEEEccCCCCChHHHHHHHHHHhhcCccccEEEccCCCCChHHHHH
Q 007577 468 KFHGNINTLKLGWCQIGASGAEFVADMLRYNNTISILDLRANGLRDEGAKCLAQSFKVVNEALTSIDLAFNEIRDDGAFA 547 (597)
Q Consensus 468 ~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~n~i~~~~~~~l~~~l~~~n~~L~~L~Ls~n~i~~~~~~~ 547 (597)
..+++|++|++++|.++...+. .+..+++|++|++++|.+++.....+..+ ++|++|++++|+++......
T Consensus 320 ~~l~~L~~L~Ls~N~l~~~~~~----~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l-----~~L~~L~L~~N~l~~~~~~~ 390 (455)
T 3v47_A 320 WGLTHLLKLNLSQNFLGSIDSR----MFENLDKLEVLDLSYNHIRALGDQSFLGL-----PNLKELALDTNQLKSVPDGI 390 (455)
T ss_dssp TTCTTCCEEECCSSCCCEECGG----GGTTCTTCCEEECCSSCCCEECTTTTTTC-----TTCCEEECCSSCCSCCCTTT
T ss_pred cCcccCCEEECCCCccCCcChh----HhcCcccCCEEECCCCcccccChhhcccc-----ccccEEECCCCccccCCHhH
Confidence 5568999999999998776443 34566999999999999987755555443 77999999999998654433
Q ss_pred HHHHHHhCCCCceeEEEcccCccchhh
Q 007577 548 IAQALKANEDVAVTSLNLANNFLTKFG 574 (597)
Q Consensus 548 l~~~l~~~~~~~L~~L~L~~N~i~~~~ 574 (597)
+... .+|+.|+|++|+++...
T Consensus 391 ~~~l------~~L~~L~l~~N~l~~~~ 411 (455)
T 3v47_A 391 FDRL------TSLQKIWLHTNPWDCSC 411 (455)
T ss_dssp TTTC------TTCCEEECCSSCBCCCT
T ss_pred hccC------CcccEEEccCCCcccCC
Confidence 3322 34999999999997644
No 20
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.94 E-value=2.6e-28 Score=264.99 Aligned_cols=188 Identities=15% Similarity=0.147 Sum_probs=98.9
Q ss_pred ccceeeccCCCCChhHHHHHHHHH-HcCCCCcEEEccCCCCCcHHHHHHHHHHhcCCCccEEEccCCCCChHHHHHHHHH
Q 007577 360 KLAVLDIGNNSISAKGAFHVAEYI-KNCKSLLWINLYMNDIGDEGAEKIADALKQNRTITTIDLGGNNIHSKGASAIARV 438 (597)
Q Consensus 360 ~L~~L~Ls~n~l~~~~~~~l~~~l-~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~ 438 (597)
+|+.|++++|.+.. ++..+ ..+++|++|++++|.+++..... ...+..+++|++|++++|+++.... ....
T Consensus 311 ~L~~L~l~~n~l~~-----ip~~~~~~l~~L~~L~Ls~N~l~~~~~~~-~~~~~~l~~L~~L~Ls~N~l~~~~~--~~~~ 382 (549)
T 2z81_A 311 KVKRITVENSKVFL-----VPCSFSQHLKSLEFLDLSENLMVEEYLKN-SACKGAWPSLQTLVLSQNHLRSMQK--TGEI 382 (549)
T ss_dssp TCCEEEEESSCCCC-----CCHHHHHHCTTCCEEECCSSCCCHHHHHH-HTCTTSSTTCCEEECTTSCCCCHHH--HHHH
T ss_pred cceEEEeccCcccc-----CCHHHHhcCccccEEEccCCccccccccc-hhhhhccccCcEEEccCCccccccc--chhh
Confidence 34455555555443 22222 45666777777766666532111 1113445666666666666665321 1223
Q ss_pred hhcCCCcCEEECcCCCCCHHHHHHHHHHHhhCCCcCEEecCCCCCChhHHHHH-------------HHHHhcCCCccEEE
Q 007577 439 LKDNSVITSLDLAYNPIGADGAKALSEVLKFHGNINTLKLGWCQIGASGAEFV-------------ADMLRYNNTISILD 505 (597)
Q Consensus 439 l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l-------------~~~l~~~~~L~~L~ 505 (597)
+..+++|++|++++|+++. +...+..+++|++|++++|.++....... ......+++|++|+
T Consensus 383 ~~~l~~L~~L~Ls~N~l~~-----lp~~~~~~~~L~~L~Ls~N~l~~l~~~~~~~L~~L~Ls~N~l~~~~~~l~~L~~L~ 457 (549)
T 2z81_A 383 LLTLKNLTSLDISRNTFHP-----MPDSCQWPEKMRFLNLSSTGIRVVKTCIPQTLEVLDVSNNNLDSFSLFLPRLQELY 457 (549)
T ss_dssp GGGCTTCCEEECTTCCCCC-----CCSCCCCCTTCCEEECTTSCCSCCCTTSCTTCSEEECCSSCCSCCCCCCTTCCEEE
T ss_pred hhcCCCCCEEECCCCCCcc-----CChhhcccccccEEECCCCCcccccchhcCCceEEECCCCChhhhcccCChhcEEE
Confidence 4555666666666666542 11222333445555555554432110000 00012467788888
Q ss_pred ccCCCCChHHHHHHHHHHhhcCccccEEEccCCCCChHHHHHHHHHHHhCCCCceeEEEcccCccchh
Q 007577 506 LRANGLRDEGAKCLAQSFKVVNEALTSIDLAFNEIRDDGAFAIAQALKANEDVAVTSLNLANNFLTKF 573 (597)
Q Consensus 506 l~~n~i~~~~~~~l~~~l~~~n~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~N~i~~~ 573 (597)
+++|+++.... ... .++|+.|+|++|+++...+..+... .+|+.|++++|+++..
T Consensus 458 Ls~N~l~~ip~--~~~-----l~~L~~L~Ls~N~l~~~~~~~~~~l------~~L~~L~l~~N~~~~~ 512 (549)
T 2z81_A 458 ISRNKLKTLPD--ASL-----FPVLLVMKISRNQLKSVPDGIFDRL------TSLQKIWLHTNPWDCS 512 (549)
T ss_dssp CCSSCCSSCCC--GGG-----CTTCCEEECCSSCCCCCCTTGGGGC------TTCCEEECCSSCBCCC
T ss_pred CCCCccCcCCC--ccc-----CccCCEEecCCCccCCcCHHHHhcC------cccCEEEecCCCccCC
Confidence 88887774321 111 2678888888888876544444333 2488888888887653
No 21
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.94 E-value=8.8e-30 Score=279.95 Aligned_cols=294 Identities=20% Similarity=0.222 Sum_probs=218.4
Q ss_pred CcCEEEecCCCCChHHHHHHHHHHHcCCCccEEEeccCCCChhhHHHHHHHHhhCCCccEEEcCCCCCChHHHHHHHHHh
Q 007577 247 GVERLQLSSVDLRDEGAKAIAELLKNNSILRVLELNNNMIDYSGFTSLAEALLENSTIRSLHLNGNYGGALGANALAKGL 326 (597)
Q Consensus 247 ~L~~L~Ls~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l 326 (597)
+|++|++++|.++... ...+..+++|++|++++|.++ .++..+..+++|++|++++|.+..... ..+
T Consensus 255 ~L~~L~l~~n~l~~~~----~~~~~~l~~L~~L~l~~n~l~-----~lp~~l~~l~~L~~L~l~~n~l~~~~~----~~~ 321 (606)
T 3t6q_A 255 SVESINLQKHYFFNIS----SNTFHCFSGLQELDLTATHLS-----ELPSGLVGLSTLKKLVLSANKFENLCQ----ISA 321 (606)
T ss_dssp EEEEEECTTCCCSSCC----TTTTTTCTTCSEEECTTSCCS-----CCCSSCCSCTTCCEEECTTCCCSBGGG----GCG
T ss_pred ceeEEEeecCccCccC----HHHhccccCCCEEeccCCccC-----CCChhhcccccCCEEECccCCcCcCch----hhh
Confidence 4555566666555431 223556789999999999986 345566778999999999999987543 446
Q ss_pred hcCCCCCEEEccCCCCChHHHHHHHHhhhcCccccceeeccCCCCChhHHHHHHHHHHcCCCCcEEEccCCCCCcHHHHH
Q 007577 327 EGNKSLRELHLHGNSIGDEGIRALMSGLSSRKGKLAVLDIGNNSISAKGAFHVAEYIKNCKSLLWINLYMNDIGDEGAEK 406 (597)
Q Consensus 327 ~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~ 406 (597)
..+++|++|++++|.+... +.......+++|+.|++++|.++.... .+..+..+++|++|++++|.+.+.
T Consensus 322 ~~l~~L~~L~l~~n~~~~~----~~~~~~~~l~~L~~L~l~~n~l~~~~~--~~~~~~~l~~L~~L~l~~n~l~~~---- 391 (606)
T 3t6q_A 322 SNFPSLTHLSIKGNTKRLE----LGTGCLENLENLRELDLSHDDIETSDC--CNLQLRNLSHLQSLNLSYNEPLSL---- 391 (606)
T ss_dssp GGCTTCSEEECCSCSSCCB----CCSSTTTTCTTCCEEECCSSCCCEEEE--STTTTTTCTTCCEEECCSCSCEEE----
T ss_pred hccCcCCEEECCCCCcccc----cchhhhhccCcCCEEECCCCccccccC--cchhcccCCCCCEEECCCCcCCcC----
Confidence 7899999999999987532 111212456799999999999987310 134577899999999999998764
Q ss_pred HHHHHhcCCCccEEEccCCCCChHHHHHHHHHhhcCCCcCEEECcCCCCCHHHHHHHHHHHhhCCCcCEEecCCCCCChh
Q 007577 407 IADALKQNRTITTIDLGGNNIHSKGASAIARVLKDNSVITSLDLAYNPIGADGAKALSEVLKFHGNINTLKLGWCQIGAS 486 (597)
Q Consensus 407 l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~ 486 (597)
.+..+..+++|++|++++|.++.... ...+..+++|++|++++|.++.... ..+..+++|++|++++|.+++.
T Consensus 392 ~~~~~~~l~~L~~L~l~~n~l~~~~~---~~~~~~l~~L~~L~l~~n~l~~~~~----~~~~~l~~L~~L~L~~n~l~~~ 464 (606)
T 3t6q_A 392 KTEAFKECPQLELLDLAFTRLKVKDA---QSPFQNLHLLKVLNLSHSLLDISSE----QLFDGLPALQHLNLQGNHFPKG 464 (606)
T ss_dssp CTTTTTTCTTCSEEECTTCCEECCTT---CCTTTTCTTCCEEECTTCCCBTTCT----TTTTTCTTCCEEECTTCBCGGG
T ss_pred CHHHhcCCccCCeEECCCCcCCCccc---chhhhCcccCCEEECCCCccCCcCH----HHHhCCCCCCEEECCCCCCCcc
Confidence 34456778999999999998865321 1225667999999999998875432 3445679999999999998653
Q ss_pred HHHHHHHHHhcCCCccEEEccCCCCChHHHHHHHHHHhhcCccccEEEccCCCCChHHHHHHHHHHHhCCCCceeEEEcc
Q 007577 487 GAEFVADMLRYNNTISILDLRANGLRDEGAKCLAQSFKVVNEALTSIDLAFNEIRDDGAFAIAQALKANEDVAVTSLNLA 566 (597)
Q Consensus 487 ~~~~l~~~l~~~~~L~~L~l~~n~i~~~~~~~l~~~l~~~n~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~ 566 (597)
... ....+..+++|++|++++|.+++..+..+... ++|++|++++|+++...+..+... ..| .|+++
T Consensus 465 ~~~-~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l-----~~L~~L~Ls~N~l~~~~~~~l~~l------~~L-~L~L~ 531 (606)
T 3t6q_A 465 NIQ-KTNSLQTLGRLEILVLSFCDLSSIDQHAFTSL-----KMMNHVDLSHNRLTSSSIEALSHL------KGI-YLNLA 531 (606)
T ss_dssp EEC-SSCGGGGCTTCCEEECTTSCCCEECTTTTTTC-----TTCCEEECCSSCCCGGGGGGGTTC------CSC-EEECC
T ss_pred ccc-cchhhccCCCccEEECCCCccCccChhhhccc-----cCCCEEECCCCccCcCChhHhCcc------ccc-EEECc
Confidence 211 01235667999999999999998765555544 789999999999998777666543 348 99999
Q ss_pred cCccchhhHHHHHHHHH
Q 007577 567 NNFLTKFGQSALTDAKD 583 (597)
Q Consensus 567 ~N~i~~~~~~~l~~~~~ 583 (597)
+|.++......+..+..
T Consensus 532 ~N~l~~~~~~~~~~l~~ 548 (606)
T 3t6q_A 532 SNHISIILPSLLPILSQ 548 (606)
T ss_dssp SSCCCCCCGGGHHHHHT
T ss_pred CCcccccCHhhcccCCC
Confidence 99999988877766543
No 22
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.94 E-value=4.4e-30 Score=282.38 Aligned_cols=118 Identities=11% Similarity=0.068 Sum_probs=82.7
Q ss_pred HHHhcCCCcEEEcCCCCCCHHHHHHHHHHhccCCCccEEEeccCCCCHHHHHHHHHHhhhCCCccEEEccCCCCChhHHH
Q 007577 157 FAKELRAFSSVDMSGRNFGDEGLFFLAESLGYNQTAEEVSFAANGITAAGIKAFDGVLQSNIALKTLNLSGNPIGDEGVK 236 (597)
Q Consensus 157 ~~~~~~~L~~L~Ls~~~l~~~~~~~l~~~l~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~ 236 (597)
.+..+++|++|++++|.+... .+..+..+++|++|++++|.++... +..+..+++|++|++++|.+.....
T Consensus 51 ~~~~l~~L~~L~Ls~n~l~~i----~~~~~~~l~~L~~L~Ls~n~l~~~~----p~~~~~l~~L~~L~L~~n~l~~~~~- 121 (606)
T 3vq2_A 51 SFSNFSELQWLDLSRCEIETI----EDKAWHGLHHLSNLILTGNPIQSFS----PGSFSGLTSLENLVAVETKLASLES- 121 (606)
T ss_dssp TTTTCTTCCEEECTTCCCCEE----CTTTTTTCTTCCEEECTTCCCCCCC----TTSSTTCTTCCEEECTTSCCCCSSS-
T ss_pred hccCCccCcEEeCCCCccccc----CHHHhhchhhcCEeECCCCcccccC----hhhcCCcccCCEEEccCCccccccc-
Confidence 345678888888888887653 2345677788888888888876432 3445677888888888888765421
Q ss_pred HHHHHHhcCCCcCEEEecCCCCChHHHHHHHHHHHcCCCccEEEeccCCCChh
Q 007577 237 CLCDILVDNAGVERLQLSSVDLRDEGAKAIAELLKNNSILRVLELNNNMIDYS 289 (597)
Q Consensus 237 ~l~~~l~~~~~L~~L~Ls~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~ 289 (597)
..+..+++|++|++++|.++... ++..+.++++|++|++++|+++..
T Consensus 122 ---~~~~~l~~L~~L~L~~n~l~~~~---lp~~~~~l~~L~~L~Ls~n~l~~~ 168 (606)
T 3vq2_A 122 ---FPIGQLITLKKLNVAHNFIHSCK---LPAYFSNLTNLVHVDLSYNYIQTI 168 (606)
T ss_dssp ---SCCTTCTTCCEEECCSSCCCCCC---CCGGGGTCTTCCEEECCSSCCCEE
T ss_pred ---cccCCCCCCCEEeCCCCccccee---chHhHhhcCCCCEEEccCCcceec
Confidence 12445688888888888876421 344566778888888888887654
No 23
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.94 E-value=5.2e-30 Score=282.25 Aligned_cols=364 Identities=17% Similarity=0.196 Sum_probs=268.1
Q ss_pred HHHhcCCCcEEEcCCCCCCHH-------------HHHHHHHHhc--cCCCccEEEeccCCCCHHHHHHHHHHhhhCCCcc
Q 007577 157 FAKELRAFSSVDMSGRNFGDE-------------GLFFLAESLG--YNQTAEEVSFAANGITAAGIKAFDGVLQSNIALK 221 (597)
Q Consensus 157 ~~~~~~~L~~L~Ls~~~l~~~-------------~~~~l~~~l~--~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~ 221 (597)
.+..+++|++|+|++|.+... ....++..+. ++++|++|++++|.+... ++..+.++++|+
T Consensus 201 ~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~----~p~~l~~l~~L~ 276 (636)
T 4eco_A 201 AVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTK----LPTFLKALPEMQ 276 (636)
T ss_dssp GGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSS----CCTTTTTCSSCC
T ss_pred HHhcccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCcc----ChHHHhcCCCCC
Confidence 356789999999999999872 1122567777 899999999999987643 445677889999
Q ss_pred EEEccCCC-CCh-hHHHHHHHHHhc------CCCcCEEEecCCCCChHHHHHHHH--HHHcCCCccEEEeccCCCChhhH
Q 007577 222 TLNLSGNP-IGD-EGVKCLCDILVD------NAGVERLQLSSVDLRDEGAKAIAE--LLKNNSILRVLELNNNMIDYSGF 291 (597)
Q Consensus 222 ~L~Ls~n~-l~~-~~~~~l~~~l~~------~~~L~~L~Ls~~~l~~~~~~~l~~--~l~~~~~L~~L~Ls~n~i~~~~~ 291 (597)
+|++++|. ++. . ++..+.. +++|++|++++|.++. ++. .+..+++|++|++++|++++
T Consensus 277 ~L~Ls~n~~l~~~~----lp~~~~~L~~~~~l~~L~~L~L~~n~l~~-----ip~~~~l~~l~~L~~L~L~~N~l~g--- 344 (636)
T 4eco_A 277 LINVACNRGISGEQ----LKDDWQALADAPVGEKIQIIYIGYNNLKT-----FPVETSLQKMKKLGMLECLYNQLEG--- 344 (636)
T ss_dssp EEECTTCTTSCHHH----HHHHHHHHHHSGGGGTCCEEECCSSCCSS-----CCCHHHHTTCTTCCEEECCSCCCEE---
T ss_pred EEECcCCCCCcccc----chHHHHhhhccccCCCCCEEECCCCcCCc-----cCchhhhccCCCCCEEeCcCCcCcc---
Confidence 99999998 876 3 3333333 4899999999999984 444 67788999999999999862
Q ss_pred HHHHHHHhhCCCccEEEcCCCCCChHHHHHHHHHhhcCCC-CCEEEccCCCCChHHHHHHHHhhhc-CccccceeeccCC
Q 007577 292 TSLAEALLENSTIRSLHLNGNYGGALGANALAKGLEGNKS-LRELHLHGNSIGDEGIRALMSGLSS-RKGKLAVLDIGNN 369 (597)
Q Consensus 292 ~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~-L~~L~Ls~n~i~~~~~~~l~~~l~~-~~~~L~~L~Ls~n 369 (597)
.++ .+..+++|++|++++|.++.. +..+..+++ |++|++++|.++. ++..+.. ..++|+.|++++|
T Consensus 345 -~ip-~~~~l~~L~~L~L~~N~l~~l-----p~~l~~l~~~L~~L~Ls~N~l~~-----lp~~~~~~~l~~L~~L~Ls~N 412 (636)
T 4eco_A 345 -KLP-AFGSEIKLASLNLAYNQITEI-----PANFCGFTEQVENLSFAHNKLKY-----IPNIFDAKSVSVMSAIDFSYN 412 (636)
T ss_dssp -ECC-CCEEEEEESEEECCSSEEEEC-----CTTSEEECTTCCEEECCSSCCSS-----CCSCCCTTCSSCEEEEECCSS
T ss_pred -chh-hhCCCCCCCEEECCCCccccc-----cHhhhhhcccCcEEEccCCcCcc-----cchhhhhcccCccCEEECcCC
Confidence 223 566788999999999987733 244778888 9999999999874 2222221 1337999999999
Q ss_pred CCChhHHHHHHHHHH-------cCCCCcEEEccCCCCCcHHHHHHHH-HHhcCCCccEEEccCCCCChHHHHHHHHH---
Q 007577 370 SISAKGAFHVAEYIK-------NCKSLLWINLYMNDIGDEGAEKIAD-ALKQNRTITTIDLGGNNIHSKGASAIARV--- 438 (597)
Q Consensus 370 ~l~~~~~~~l~~~l~-------~~~~L~~L~Ls~n~l~~~~~~~l~~-~l~~~~~L~~L~L~~n~l~~~~~~~l~~~--- 438 (597)
.++.. ++..+. .+++|++|+|++|.++. ++. .+..+++|++|+|++|.++......+...
T Consensus 413 ~l~~~----~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~~-----lp~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~~~~~ 483 (636)
T 4eco_A 413 EIGSV----DGKNFDPLDPTPFKGINVSSINLSNNQISK-----FPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENEN 483 (636)
T ss_dssp CTTTT----TTCSSCTTCSSCCCCCCEEEEECCSSCCCS-----CCTHHHHTTCCCSEEECCSSCCSBCCSSSSEETTEE
T ss_pred cCCCc----chhhhcccccccccCCCCCEEECcCCccCc-----CCHHHHccCCCCCEEECCCCCCCCcCHHHhcccccc
Confidence 99873 444455 66799999999999885 222 33457999999999999985221111100
Q ss_pred hhcCCCcCEEECcCCCCCHHHHHHHHHHHh--hCCCcCEEecCCCCCChhHHHHHHHHHhcCCCccEEEcc------CCC
Q 007577 439 LKDNSVITSLDLAYNPIGADGAKALSEVLK--FHGNINTLKLGWCQIGASGAEFVADMLRYNNTISILDLR------ANG 510 (597)
Q Consensus 439 l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~--~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~------~n~ 510 (597)
+.++++|++|+|++|.++. +...+. .+++|++|++++|+++.. ...+..+++|++|+++ +|.
T Consensus 484 ~~~l~~L~~L~Ls~N~l~~-----lp~~~~~~~l~~L~~L~Ls~N~l~~i-----p~~~~~l~~L~~L~Ls~N~~ls~N~ 553 (636)
T 4eco_A 484 FKNTYLLTSIDLRFNKLTK-----LSDDFRATTLPYLVGIDLSYNSFSKF-----PTQPLNSSTLKGFGIRNQRDAQGNR 553 (636)
T ss_dssp CTTGGGCCEEECCSSCCCB-----CCGGGSTTTCTTCCEEECCSSCCSSC-----CCGGGGCSSCCEEECCSCBCTTCCB
T ss_pred ccccCCccEEECcCCcCCc-----cChhhhhccCCCcCEEECCCCCCCCc-----ChhhhcCCCCCEEECCCCcccccCc
Confidence 1112389999999999983 334443 679999999999999862 2335567999999995 465
Q ss_pred CChHHHHHHHHHHhhcCccccEEEccCCCCChHHHHHHHHHHHhCCCCceeEEEcccCccchhhHHHHHHH
Q 007577 511 LRDEGAKCLAQSFKVVNEALTSIDLAFNEIRDDGAFAIAQALKANEDVAVTSLNLANNFLTKFGQSALTDA 581 (597)
Q Consensus 511 i~~~~~~~l~~~l~~~n~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~N~i~~~~~~~l~~~ 581 (597)
+....+..+..+ ++|++|+|++|+++.. +..+. .+|+.|+|++|+++.++...+...
T Consensus 554 l~~~~p~~l~~l-----~~L~~L~Ls~N~l~~i-p~~~~--------~~L~~L~Ls~N~l~~~~~~~~~~~ 610 (636)
T 4eco_A 554 TLREWPEGITLC-----PSLTQLQIGSNDIRKV-NEKIT--------PNISVLDIKDNPNISIDLSYVCPY 610 (636)
T ss_dssp CCCCCCTTGGGC-----SSCCEEECCSSCCCBC-CSCCC--------TTCCEEECCSCTTCEEECTTTHHH
T ss_pred ccccChHHHhcC-----CCCCEEECCCCcCCcc-CHhHh--------CcCCEEECcCCCCccccHHhcchh
Confidence 655444444443 7899999999999643 22222 249999999999998776555443
No 24
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.94 E-value=2.2e-29 Score=282.35 Aligned_cols=371 Identities=15% Similarity=0.177 Sum_probs=266.3
Q ss_pred HHHhcCCCcEEEcCCCCCCHHH-------------HHHHHHHhc--cCCCccEEEeccCCCCHHHHHHHHHHhhhCCCcc
Q 007577 157 FAKELRAFSSVDMSGRNFGDEG-------------LFFLAESLG--YNQTAEEVSFAANGITAAGIKAFDGVLQSNIALK 221 (597)
Q Consensus 157 ~~~~~~~L~~L~Ls~~~l~~~~-------------~~~l~~~l~--~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~ 221 (597)
.+..+++|++|+|++|.+.... -..++..+. .+++|+.|+|++|.+... ++..+..+++|+
T Consensus 443 ~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~----iP~~l~~L~~L~ 518 (876)
T 4ecn_A 443 AIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQ----LPDFLYDLPELQ 518 (876)
T ss_dssp GGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCS----CCGGGGGCSSCC
T ss_pred HHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCcc----ChHHHhCCCCCC
Confidence 3667899999999999998721 112566666 899999999999986543 446677899999
Q ss_pred EEEccCCC-CCh-hHHHHHHHH---HhcCCCcCEEEecCCCCChHHHHHHHH--HHHcCCCccEEEeccCCCChhhHHHH
Q 007577 222 TLNLSGNP-IGD-EGVKCLCDI---LVDNAGVERLQLSSVDLRDEGAKAIAE--LLKNNSILRVLELNNNMIDYSGFTSL 294 (597)
Q Consensus 222 ~L~Ls~n~-l~~-~~~~~l~~~---l~~~~~L~~L~Ls~~~l~~~~~~~l~~--~l~~~~~L~~L~Ls~n~i~~~~~~~l 294 (597)
+|+|++|+ ++. .-...+... +..+++|++|++++|.++. ++. .+.++++|++|++++|.++. +
T Consensus 519 ~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~~-----ip~~~~l~~L~~L~~L~Ls~N~l~~-----l 588 (876)
T 4ecn_A 519 SLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEE-----FPASASLQKMVKLGLLDCVHNKVRH-----L 588 (876)
T ss_dssp EEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCCB-----CCCHHHHTTCTTCCEEECTTSCCCB-----C
T ss_pred EEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCCc-----cCChhhhhcCCCCCEEECCCCCccc-----c
Confidence 99999998 876 322223222 2235699999999999984 444 67788999999999999972 2
Q ss_pred HHHHhhCCCccEEEcCCCCCChHHHHHHHHHhhcCCC-CCEEEccCCCCChHHHHHHHHhhhc-CccccceeeccCCCCC
Q 007577 295 AEALLENSTIRSLHLNGNYGGALGANALAKGLEGNKS-LRELHLHGNSIGDEGIRALMSGLSS-RKGKLAVLDIGNNSIS 372 (597)
Q Consensus 295 ~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~-L~~L~Ls~n~i~~~~~~~l~~~l~~-~~~~L~~L~Ls~n~l~ 372 (597)
+ .+..+++|+.|++++|.++..+ ..+..+++ |++|++++|.++. ++..+.. ..++|+.|++++|.++
T Consensus 589 p-~~~~L~~L~~L~Ls~N~l~~lp-----~~l~~l~~~L~~L~Ls~N~L~~-----lp~~~~~~~~~~L~~L~Ls~N~l~ 657 (876)
T 4ecn_A 589 E-AFGTNVKLTDLKLDYNQIEEIP-----EDFCAFTDQVEGLGFSHNKLKY-----IPNIFNAKSVYVMGSVDFSYNKIG 657 (876)
T ss_dssp C-CCCTTSEESEEECCSSCCSCCC-----TTSCEECTTCCEEECCSSCCCS-----CCSCCCTTCSSCEEEEECCSSCTT
T ss_pred h-hhcCCCcceEEECcCCccccch-----HHHhhccccCCEEECcCCCCCc-----CchhhhccccCCCCEEECcCCcCC
Confidence 3 5677899999999999987433 44778888 9999999999874 2222211 1235999999999987
Q ss_pred hhHHHHHHHHHH--cCCCCcEEEccCCCCCcHHHHHHHHHH-hcCCCccEEEccCCCCChHHHHHHHHH---hhcCCCcC
Q 007577 373 AKGAFHVAEYIK--NCKSLLWINLYMNDIGDEGAEKIADAL-KQNRTITTIDLGGNNIHSKGASAIARV---LKDNSVIT 446 (597)
Q Consensus 373 ~~~~~~l~~~l~--~~~~L~~L~Ls~n~l~~~~~~~l~~~l-~~~~~L~~L~L~~n~l~~~~~~~l~~~---l~~~~~L~ 446 (597)
.... .++..+. .+++|++|+|++|.++. ++..+ ..+++|++|+|++|.|+......+... +.+|++|+
T Consensus 658 g~ip-~l~~~l~~~~~~~L~~L~Ls~N~L~~-----lp~~~~~~l~~L~~L~Ls~N~L~~ip~~~~~~~~~~l~nl~~L~ 731 (876)
T 4ecn_A 658 SEGR-NISCSMDDYKGINASTVTLSYNEIQK-----FPTELFATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLT 731 (876)
T ss_dssp TTSS-SCSSCTTTCCCCCEEEEECCSSCCCS-----CCHHHHHTTCCCSEEECCSCCCSCCCTTSSSCTTSCCTTGGGCC
T ss_pred Cccc-cchhhhccccCCCcCEEEccCCcCCc-----cCHHHHccCCCCCEEECCCCcCCccChHHhccccccccccCCcc
Confidence 6200 0111111 34589999999999985 33333 367999999999999884221111100 11234899
Q ss_pred EEECcCCCCCHHHHHHHHHHHh--hCCCcCEEecCCCCCChhHHHHHHHHHhcCCCccEEEccC------CCCChHHHHH
Q 007577 447 SLDLAYNPIGADGAKALSEVLK--FHGNINTLKLGWCQIGASGAEFVADMLRYNNTISILDLRA------NGLRDEGAKC 518 (597)
Q Consensus 447 ~L~Ls~n~i~~~~~~~l~~~l~--~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~------n~i~~~~~~~ 518 (597)
+|+|++|.++. +...+. .+++|+.|+|++|.++.. ...+..+++|+.|++++ |.+....+..
T Consensus 732 ~L~Ls~N~L~~-----lp~~l~~~~l~~L~~L~Ls~N~L~~l-----p~~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~ 801 (876)
T 4ecn_A 732 TIDLRFNKLTS-----LSDDFRATTLPYLSNMDVSYNCFSSF-----PTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTG 801 (876)
T ss_dssp EEECCSSCCCC-----CCGGGSTTTCTTCCEEECCSSCCSSC-----CCGGGGCTTCCEEECCCCBCTTCCBCCCCCCTT
T ss_pred EEECCCCCCcc-----chHHhhhccCCCcCEEEeCCCCCCcc-----chhhhcCCCCCEEECCCCCCcccccccccChHH
Confidence 99999999873 334444 679999999999999763 33455789999999977 6565544444
Q ss_pred HHHHHhhcCccccEEEccCCCCChHHHHHHHHHHHhCCCCceeEEEcccCccchhhHHHHHHHH
Q 007577 519 LAQSFKVVNEALTSIDLAFNEIRDDGAFAIAQALKANEDVAVTSLNLANNFLTKFGQSALTDAK 582 (597)
Q Consensus 519 l~~~l~~~n~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~N~i~~~~~~~l~~~~ 582 (597)
+..+ ++|+.|+|++|+++. .+..+. .+|+.|+|++|++..+....+....
T Consensus 802 l~~L-----~~L~~L~Ls~N~L~~-Ip~~l~--------~~L~~LdLs~N~l~~i~~~~~~~~~ 851 (876)
T 4ecn_A 802 ITTC-----PSLIQLQIGSNDIRK-VDEKLT--------PQLYILDIADNPNISIDVTSVCPYI 851 (876)
T ss_dssp GGGC-----SSCCEEECCSSCCCB-CCSCCC--------SSSCEEECCSCTTCEEECGGGHHHH
T ss_pred HhcC-----CCCCEEECCCCCCCc-cCHhhc--------CCCCEEECCCCCCCccChHHccccc
Confidence 4443 789999999999953 222222 2599999999999998877776653
No 25
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.94 E-value=6.1e-30 Score=281.67 Aligned_cols=344 Identities=14% Similarity=0.144 Sum_probs=246.3
Q ss_pred HHHHhccCCCccEEEeccCCCCHH-------------HHHHHHHHhh--hCCCccEEEccCCCCChhHHHHHHHHHhcCC
Q 007577 182 LAESLGYNQTAEEVSFAANGITAA-------------GIKAFDGVLQ--SNIALKTLNLSGNPIGDEGVKCLCDILVDNA 246 (597)
Q Consensus 182 l~~~l~~~~~L~~L~L~~~~l~~~-------------~~~~l~~~l~--~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~ 246 (597)
++..+.++++|++|++++|.++.. ....++..+. ++++|++|++++|.+... ++..+..++
T Consensus 198 ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~----~p~~l~~l~ 273 (636)
T 4eco_A 198 VSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTK----LPTFLKALP 273 (636)
T ss_dssp ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSS----CCTTTTTCS
T ss_pred CCHHHhcccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCcc----ChHHHhcCC
Confidence 445677899999999999998862 1112555666 889999999999987654 556666789
Q ss_pred CcCEEEecCCC-CCh-HHHHHHHHH--HHcCCCccEEEeccCCCChhhHHHHHH--HHhhCCCccEEEcCCCCCC-hHHH
Q 007577 247 GVERLQLSSVD-LRD-EGAKAIAEL--LKNNSILRVLELNNNMIDYSGFTSLAE--ALLENSTIRSLHLNGNYGG-ALGA 319 (597)
Q Consensus 247 ~L~~L~Ls~~~-l~~-~~~~~l~~~--l~~~~~L~~L~Ls~n~i~~~~~~~l~~--~l~~~~~L~~L~L~~n~i~-~~~~ 319 (597)
+|++|++++|. ++. .....+... +..+++|++|++++|+++ .++. .+..+++|++|++++|.++ ..+
T Consensus 274 ~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~-----~ip~~~~l~~l~~L~~L~L~~N~l~g~ip- 347 (636)
T 4eco_A 274 EMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK-----TFPVETSLQKMKKLGMLECLYNQLEGKLP- 347 (636)
T ss_dssp SCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS-----SCCCHHHHTTCTTCCEEECCSCCCEEECC-
T ss_pred CCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCC-----ccCchhhhccCCCCCEEeCcCCcCccchh-
Confidence 99999999998 887 433333332 123488999999999986 2444 6778999999999999887 433
Q ss_pred HHHHHHhhcCCCCCEEEccCCCCChHHHHHHHHhhhcCccc-cceeeccCCCCChhHHHHHHHHHHcC--CCCcEEEccC
Q 007577 320 NALAKGLEGNKSLRELHLHGNSIGDEGIRALMSGLSSRKGK-LAVLDIGNNSISAKGAFHVAEYIKNC--KSLLWINLYM 396 (597)
Q Consensus 320 ~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~-L~~L~Ls~n~l~~~~~~~l~~~l~~~--~~L~~L~Ls~ 396 (597)
.+..+++|++|++++|.++. ++..+ ..+++ |+.|++++|.++. ++..+... ++|++|++++
T Consensus 348 -----~~~~l~~L~~L~L~~N~l~~-----lp~~l-~~l~~~L~~L~Ls~N~l~~-----lp~~~~~~~l~~L~~L~Ls~ 411 (636)
T 4eco_A 348 -----AFGSEIKLASLNLAYNQITE-----IPANF-CGFTEQVENLSFAHNKLKY-----IPNIFDAKSVSVMSAIDFSY 411 (636)
T ss_dssp -----CCEEEEEESEEECCSSEEEE-----CCTTS-EEECTTCCEEECCSSCCSS-----CCSCCCTTCSSCEEEEECCS
T ss_pred -----hhCCCCCCCEEECCCCcccc-----ccHhh-hhhcccCcEEEccCCcCcc-----cchhhhhcccCccCEEECcC
Confidence 46778899999999998763 33333 34456 9999999999885 55544443 3899999999
Q ss_pred CCCCcHHHHHHHHHHh-------cCCCccEEEccCCCCChHHHHHHHHHhhcCCCcCEEECcCCCCCHHHHHHHHHH---
Q 007577 397 NDIGDEGAEKIADALK-------QNRTITTIDLGGNNIHSKGASAIARVLKDNSVITSLDLAYNPIGADGAKALSEV--- 466 (597)
Q Consensus 397 n~l~~~~~~~l~~~l~-------~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~--- 466 (597)
|.++.. ++..+. .+++|++|++++|.++.... ..+..+++|++|+|++|.++......+...
T Consensus 412 N~l~~~----~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~~lp~----~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~~~~~ 483 (636)
T 4eco_A 412 NEIGSV----DGKNFDPLDPTPFKGINVSSINLSNNQISKFPK----ELFSTGSPLSSINLMGNMLTEIPKNSLKDENEN 483 (636)
T ss_dssp SCTTTT----TTCSSCTTCSSCCCCCCEEEEECCSSCCCSCCT----HHHHTTCCCSEEECCSSCCSBCCSSSSEETTEE
T ss_pred CcCCCc----chhhhcccccccccCCCCCEEECcCCccCcCCH----HHHccCCCCCEEECCCCCCCCcCHHHhcccccc
Confidence 998764 333344 56799999999999985322 223446999999999998873211111100
Q ss_pred HhhCCCcCEEecCCCCCChhHHHHHHHHHh--cCCCccEEEccCCCCChHHHHHHHHHHhhcCccccEEEcc------CC
Q 007577 467 LKFHGNINTLKLGWCQIGASGAEFVADMLR--YNNTISILDLRANGLRDEGAKCLAQSFKVVNEALTSIDLA------FN 538 (597)
Q Consensus 467 l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~--~~~~L~~L~l~~n~i~~~~~~~l~~~l~~~n~~L~~L~Ls------~n 538 (597)
++.+++|++|++++|.++... ..+. .+++|++|++++|.++.. +..+..+ ++|++|+|+ +|
T Consensus 484 ~~~l~~L~~L~Ls~N~l~~lp-----~~~~~~~l~~L~~L~Ls~N~l~~i-p~~~~~l-----~~L~~L~Ls~N~~ls~N 552 (636)
T 4eco_A 484 FKNTYLLTSIDLRFNKLTKLS-----DDFRATTLPYLVGIDLSYNSFSKF-PTQPLNS-----STLKGFGIRNQRDAQGN 552 (636)
T ss_dssp CTTGGGCCEEECCSSCCCBCC-----GGGSTTTCTTCCEEECCSSCCSSC-CCGGGGC-----SSCCEEECCSCBCTTCC
T ss_pred ccccCCccEEECcCCcCCccC-----hhhhhccCCCcCEEECCCCCCCCc-ChhhhcC-----CCCCEEECCCCcccccC
Confidence 111238999999999998432 2333 679999999999999862 3333332 789999995 56
Q ss_pred CCChHHHHHHHHHHHhCCCCceeEEEcccCccchhhHH
Q 007577 539 EIRDDGAFAIAQALKANEDVAVTSLNLANNFLTKFGQS 576 (597)
Q Consensus 539 ~i~~~~~~~l~~~l~~~~~~~L~~L~L~~N~i~~~~~~ 576 (597)
++....+..+... .+|+.|+|++|.|+.+...
T Consensus 553 ~l~~~~p~~l~~l------~~L~~L~Ls~N~l~~ip~~ 584 (636)
T 4eco_A 553 RTLREWPEGITLC------PSLTQLQIGSNDIRKVNEK 584 (636)
T ss_dssp BCCCCCCTTGGGC------SSCCEEECCSSCCCBCCSC
T ss_pred cccccChHHHhcC------CCCCEEECCCCcCCccCHh
Confidence 6665555555443 3599999999999776544
No 26
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.94 E-value=1.3e-28 Score=267.43 Aligned_cols=318 Identities=13% Similarity=0.144 Sum_probs=205.5
Q ss_pred HHhcCCCcEEEcCCCCCCHHHHHHHHHHhccCCCccEEEeccCCCCHHHHHHHHHHhhhCCCccEEEccCCCCChhHHHH
Q 007577 158 AKELRAFSSVDMSGRNFGDEGLFFLAESLGYNQTAEEVSFAANGITAAGIKAFDGVLQSNIALKTLNLSGNPIGDEGVKC 237 (597)
Q Consensus 158 ~~~~~~L~~L~Ls~~~l~~~~~~~l~~~l~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~ 237 (597)
+..+++|++|++++|.+... .+..+..+++|++|++++|.++.... ..+..+++|++|++++|.++..+
T Consensus 46 ~~~l~~L~~L~Ls~n~i~~~----~~~~~~~l~~L~~L~Ls~n~l~~~~~----~~~~~l~~L~~L~Ls~n~l~~~~--- 114 (549)
T 2z81_A 46 LRACANLQVLILKSSRINTI----EGDAFYSLGSLEHLDLSDNHLSSLSS----SWFGPLSSLKYLNLMGNPYQTLG--- 114 (549)
T ss_dssp TSSCTTCCEEECTTSCCCEE----CTTTTTTCTTCCEEECTTSCCCSCCH----HHHTTCTTCCEEECTTCCCSSSC---
T ss_pred hhcCCcccEEECCCCCcCcc----ChhhccccccCCEEECCCCccCccCH----HHhccCCCCcEEECCCCcccccc---
Confidence 45678888888888887653 23456677888888888888765432 33456778888888888776421
Q ss_pred HHHHHhcCCCcCEEEecCCC-CChHHHHHHHHHHHcCCCccEEEeccCCCChhhHHHHHHHHhhCCCccEEEcCCCCCCh
Q 007577 238 LCDILVDNAGVERLQLSSVD-LRDEGAKAIAELLKNNSILRVLELNNNMIDYSGFTSLAEALLENSTIRSLHLNGNYGGA 316 (597)
Q Consensus 238 l~~~l~~~~~L~~L~Ls~~~-l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~ 316 (597)
++..+..+++|++|++++|. ++... ...+..+++|++|++++|.++.. .+..+..+++|++|++++|.+..
T Consensus 115 ~~~~~~~l~~L~~L~L~~n~~~~~~~----~~~~~~l~~L~~L~L~~n~l~~~----~~~~l~~l~~L~~L~l~~n~~~~ 186 (549)
T 2z81_A 115 VTSLFPNLTNLQTLRIGNVETFSEIR----RIDFAGLTSLNELEIKALSLRNY----QSQSLKSIRDIHHLTLHLSESAF 186 (549)
T ss_dssp SSCSCTTCTTCCEEEEEESSSCCEEC----TTTTTTCCEEEEEEEEETTCCEE----CTTTTTTCSEEEEEEEECSBSTT
T ss_pred hhhhhhccCCccEEECCCCccccccC----HhhhhcccccCeeeccCCccccc----ChhhhhccccCceEecccCcccc
Confidence 11234456788888888886 44321 12345567888888888887643 23455667888888888887765
Q ss_pred HHHHHHHHHhhcCCCCCEEEccCCCCChHHHHHHHHhhhcCccccceeeccCCCCChhHHHHHHHHH-------------
Q 007577 317 LGANALAKGLEGNKSLRELHLHGNSIGDEGIRALMSGLSSRKGKLAVLDIGNNSISAKGAFHVAEYI------------- 383 (597)
Q Consensus 317 ~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l------------- 383 (597)
.+. ..+..+++|++|++++|.+++.... ...+....++|+.|++++|.+++.....+...+
T Consensus 187 ~~~----~~~~~l~~L~~L~L~~n~l~~~~~~--~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~L~~l~l~~ 260 (549)
T 2z81_A 187 LLE----IFADILSSVRYLELRDTNLARFQFS--PLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDD 260 (549)
T ss_dssp HHH----HHHHSTTTBSEEEEESCBCTTCCCC--CCSSCCCCCCCCEEEEESCEEEHHHHHHHHGGGGGCTTCCEEEEES
T ss_pred cch----hhHhhcccccEEEccCCcccccccc--ccchhhhhhcccceeccccccchhHHHHHHHHhhhhcccccccccc
Confidence 443 2234688999999999887652100 000111233455555555555544333333222
Q ss_pred ----------------------------------------------HcCCCCcEEEccCCCCCcHHHHHHHHHH-hcCCC
Q 007577 384 ----------------------------------------------KNCKSLLWINLYMNDIGDEGAEKIADAL-KQNRT 416 (597)
Q Consensus 384 ----------------------------------------------~~~~~L~~L~Ls~n~l~~~~~~~l~~~l-~~~~~ 416 (597)
...++|++|++++|.++. ++..+ ..+++
T Consensus 261 ~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~~~~~~~~L~~L~l~~n~l~~-----ip~~~~~~l~~ 335 (549)
T 2z81_A 261 CTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVFL-----VPCSFSQHLKS 335 (549)
T ss_dssp CEEECCSCCCCCTTTCCCCCTTCCEEEEESCBCSCGGGSCCCCHHHHHSTTCCEEEEESSCCCC-----CCHHHHHHCTT
T ss_pred ccccccccccccchhhhhhhcccccccccccccchhhhcccchhhhhhcccceEEEeccCcccc-----CCHHHHhcCcc
Confidence 233456666666666553 33333 45899
Q ss_pred ccEEEccCCCCChHHHHHHHHHhhcCCCcCEEECcCCCCCHHHHHHHHHHHhhCCCcCEEecCCCCCChhHHHHHHHHHh
Q 007577 417 ITTIDLGGNNIHSKGASAIARVLKDNSVITSLDLAYNPIGADGAKALSEVLKFHGNINTLKLGWCQIGASGAEFVADMLR 496 (597)
Q Consensus 417 L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~ 496 (597)
|++|++++|.+++..... ...+..+++|++|++++|.++... .....+..+++|++|++++|+++.. ...+.
T Consensus 336 L~~L~Ls~N~l~~~~~~~-~~~~~~l~~L~~L~Ls~N~l~~~~--~~~~~~~~l~~L~~L~Ls~N~l~~l-----p~~~~ 407 (549)
T 2z81_A 336 LEFLDLSENLMVEEYLKN-SACKGAWPSLQTLVLSQNHLRSMQ--KTGEILLTLKNLTSLDISRNTFHPM-----PDSCQ 407 (549)
T ss_dssp CCEEECCSSCCCHHHHHH-HTCTTSSTTCCEEECTTSCCCCHH--HHHHHGGGCTTCCEEECTTCCCCCC-----CSCCC
T ss_pred ccEEEccCCccccccccc-hhhhhccccCcEEEccCCcccccc--cchhhhhcCCCCCEEECCCCCCccC-----Chhhc
Confidence 999999999999854322 122566799999999999997642 2234567789999999999998743 22344
Q ss_pred cCCCccEEEccCCCCCh
Q 007577 497 YNNTISILDLRANGLRD 513 (597)
Q Consensus 497 ~~~~L~~L~l~~n~i~~ 513 (597)
.+++|++|++++|.++.
T Consensus 408 ~~~~L~~L~Ls~N~l~~ 424 (549)
T 2z81_A 408 WPEKMRFLNLSSTGIRV 424 (549)
T ss_dssp CCTTCCEEECTTSCCSC
T ss_pred ccccccEEECCCCCccc
Confidence 56778888888887654
No 27
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.94 E-value=8.1e-29 Score=262.47 Aligned_cols=366 Identities=15% Similarity=0.129 Sum_probs=261.1
Q ss_pred EEEcCCCCCCHHHHHHHHHHhccCCCccEEEeccCCCCHHHHHHHHHHhhhCCCccEEEccCCCCChhHHHHHHHHHhcC
Q 007577 166 SVDMSGRNFGDEGLFFLAESLGYNQTAEEVSFAANGITAAGIKAFDGVLQSNIALKTLNLSGNPIGDEGVKCLCDILVDN 245 (597)
Q Consensus 166 ~L~Ls~~~l~~~~~~~l~~~l~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~ 245 (597)
.++.+++.++.. +. -.++|++|++++|.++... +..+..+++|++|++++|.+...- -...+..+
T Consensus 14 ~~~c~~~~l~~l-----p~---l~~~l~~L~Ls~n~i~~~~----~~~~~~l~~L~~L~L~~n~~~~~i---~~~~~~~l 78 (455)
T 3v47_A 14 NAICINRGLHQV-----PE---LPAHVNYVDLSLNSIAELN----ETSFSRLQDLQFLKVEQQTPGLVI---RNNTFRGL 78 (455)
T ss_dssp EEECCSSCCSSC-----CC---CCTTCCEEECCSSCCCEEC----TTTTSSCTTCCEEECCCCSTTCEE---CTTTTTTC
T ss_pred ccCcCCCCcccC-----CC---CCCccCEEEecCCccCcCC----hhHhccCccccEEECcCCcccceE---Cccccccc
Confidence 566666666542 22 1378999999999987542 344667899999999999875220 12334567
Q ss_pred CCcCEEEecCCCCChHHHHHHHHHHHcCCCccEEEeccCCCChhhHHHHHHHHhhCCCccEEEcCCCCCChHHHHHHHHH
Q 007577 246 AGVERLQLSSVDLRDEGAKAIAELLKNNSILRVLELNNNMIDYSGFTSLAEALLENSTIRSLHLNGNYGGALGANALAKG 325 (597)
Q Consensus 246 ~~L~~L~Ls~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~ 325 (597)
++|++|++++|.++.. .+..+..+++|++|++++|.+++.... ...+..+++|++|++++|.++..... ..
T Consensus 79 ~~L~~L~Ls~n~l~~~----~~~~~~~l~~L~~L~L~~n~l~~~~~~--~~~~~~l~~L~~L~L~~n~l~~~~~~---~~ 149 (455)
T 3v47_A 79 SSLIILKLDYNQFLQL----ETGAFNGLANLEVLTLTQCNLDGAVLS--GNFFKPLTSLEMLVLRDNNIKKIQPA---SF 149 (455)
T ss_dssp TTCCEEECTTCTTCEE----CTTTTTTCTTCCEEECTTSCCBTHHHH--SSTTTTCTTCCEEECCSSBCCSCCCC---GG
T ss_pred ccCCEEeCCCCccCcc----ChhhccCcccCCEEeCCCCCCCccccC--cccccCcccCCEEECCCCccCccCcc---cc
Confidence 9999999999999875 234556679999999999999753211 12266789999999999998765321 12
Q ss_pred hhcCCCCCEEEccCCCCChHHHHHHHHhhhcCccccceeeccCCCCChhHHHH----HHHHHHcCCCCcEEEccCCCCCc
Q 007577 326 LEGNKSLRELHLHGNSIGDEGIRALMSGLSSRKGKLAVLDIGNNSISAKGAFH----VAEYIKNCKSLLWINLYMNDIGD 401 (597)
Q Consensus 326 l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~----l~~~l~~~~~L~~L~Ls~n~l~~ 401 (597)
+.++++|++|++++|.++......+.. + ...+|+.|++++|.+....... ....+..+++|++|++++|.+++
T Consensus 150 ~~~l~~L~~L~L~~n~l~~~~~~~l~~-l--~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~ 226 (455)
T 3v47_A 150 FLNMRRFHVLDLTFNKVKSICEEDLLN-F--QGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKE 226 (455)
T ss_dssp GGGCTTCCEEECTTCCBSCCCTTTSGG-G--TTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCH
T ss_pred cCCCCcccEEeCCCCcccccChhhhhc-c--ccccccccccccCcccccchhhccccccccccccceeeeEecCCCcccc
Confidence 678999999999999987643222211 1 1247999999999887632111 11113356789999999999998
Q ss_pred HHHHHHHHHHhcCCCccEEEccCCCCChHHH----------HHHHHHhhcCCCcCEEECcCCCCCHHHHHHHHHHHhhCC
Q 007577 402 EGAEKIADALKQNRTITTIDLGGNNIHSKGA----------SAIARVLKDNSVITSLDLAYNPIGADGAKALSEVLKFHG 471 (597)
Q Consensus 402 ~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~----------~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~ 471 (597)
.....+...+ ..++|+.|++++|.+..... ..+.. ..+++|++|++++|.++... ...+..++
T Consensus 227 ~~~~~~~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~L~~L~l~~n~l~~~~----~~~~~~l~ 299 (455)
T 3v47_A 227 SMAKRFFDAI-AGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKG--LEASGVKTCDLSKSKIFALL----KSVFSHFT 299 (455)
T ss_dssp HHHHHHHHHT-TTCCEEEEECTTCTTTSCCTTCCSSCCCCTTTTGG--GTTSCCCEEECCSSCCCEEC----TTTTTTCT
T ss_pred cchhhhhccc-cccceeeEeeccccccccccchhhhccCccccccc--ccccCceEEEecCccccccc----hhhcccCC
Confidence 7666665543 34899999999885433110 00000 12368999999999987642 33456679
Q ss_pred CcCEEecCCCCCChhHHHHHHHHHhcCCCccEEEccCCCCChHHHHHHHHHHhhcCccccEEEccCCCCChHHHHHHHHH
Q 007577 472 NINTLKLGWCQIGASGAEFVADMLRYNNTISILDLRANGLRDEGAKCLAQSFKVVNEALTSIDLAFNEIRDDGAFAIAQA 551 (597)
Q Consensus 472 ~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~n~i~~~~~~~l~~~l~~~n~~L~~L~Ls~n~i~~~~~~~l~~~ 551 (597)
+|++|++++|.+++..+.. +..+++|++|++++|.+++.....+... ++|++|++++|+++...+..+...
T Consensus 300 ~L~~L~Ls~n~l~~~~~~~----~~~l~~L~~L~Ls~N~l~~~~~~~~~~l-----~~L~~L~Ls~N~l~~~~~~~~~~l 370 (455)
T 3v47_A 300 DLEQLTLAQNEINKIDDNA----FWGLTHLLKLNLSQNFLGSIDSRMFENL-----DKLEVLDLSYNHIRALGDQSFLGL 370 (455)
T ss_dssp TCCEEECTTSCCCEECTTT----TTTCTTCCEEECCSSCCCEECGGGGTTC-----TTCCEEECCSSCCCEECTTTTTTC
T ss_pred CCCEEECCCCcccccChhH----hcCcccCCEEECCCCccCCcChhHhcCc-----ccCCEEECCCCcccccChhhcccc
Confidence 9999999999998764433 4556999999999999987655555443 789999999999997766555443
Q ss_pred HHhCCCCceeEEEcccCccchhhHHHHHH
Q 007577 552 LKANEDVAVTSLNLANNFLTKFGQSALTD 580 (597)
Q Consensus 552 l~~~~~~~L~~L~L~~N~i~~~~~~~l~~ 580 (597)
.+|+.|+|++|.|+......+..
T Consensus 371 ------~~L~~L~L~~N~l~~~~~~~~~~ 393 (455)
T 3v47_A 371 ------PNLKELALDTNQLKSVPDGIFDR 393 (455)
T ss_dssp ------TTCCEEECCSSCCSCCCTTTTTT
T ss_pred ------ccccEEECCCCccccCCHhHhcc
Confidence 35999999999999877665543
No 28
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.93 E-value=2.5e-28 Score=273.70 Aligned_cols=349 Identities=15% Similarity=0.168 Sum_probs=257.3
Q ss_pred hcCCCcEEEcCCCCCCHHHHHHHHHHhccCCCccEEEeccCC-CCH-HHHHHHHH---HhhhCCCccEEEccCCCCChhH
Q 007577 160 ELRAFSSVDMSGRNFGDEGLFFLAESLGYNQTAEEVSFAANG-ITA-AGIKAFDG---VLQSNIALKTLNLSGNPIGDEG 234 (597)
Q Consensus 160 ~~~~L~~L~Ls~~~l~~~~~~~l~~~l~~~~~L~~L~L~~~~-l~~-~~~~~l~~---~l~~~~~L~~L~Ls~n~l~~~~ 234 (597)
.+++|++|+|++|.+... ++..+..+++|+.|++++|+ ++. .-...+.. .+..+++|++|++++|.+..
T Consensus 489 ~L~~L~~L~Ls~N~l~~~----iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~~-- 562 (876)
T 4ecn_A 489 NLKDLTDVELYNCPNMTQ----LPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEE-- 562 (876)
T ss_dssp GCTTCCEEEEESCTTCCS----CCGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCCB--
T ss_pred cCCCCCEEECcCCCCCcc----ChHHHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCCc--
Confidence 789999999999987543 56778889999999999998 886 32333322 23456699999999999984
Q ss_pred HHHHHH--HHhcCCCcCEEEecCCCCChHHHHHHHHHHHcCCCccEEEeccCCCChhhHHHHHHHHhhCCC-ccEEEcCC
Q 007577 235 VKCLCD--ILVDNAGVERLQLSSVDLRDEGAKAIAELLKNNSILRVLELNNNMIDYSGFTSLAEALLENST-IRSLHLNG 311 (597)
Q Consensus 235 ~~~l~~--~l~~~~~L~~L~Ls~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~-L~~L~L~~ 311 (597)
++. .+..+++|+.|++++|.++. ++ .+..+++|++|++++|.++ .++..+..+++ |+.|++++
T Consensus 563 ---ip~~~~l~~L~~L~~L~Ls~N~l~~-----lp-~~~~L~~L~~L~Ls~N~l~-----~lp~~l~~l~~~L~~L~Ls~ 628 (876)
T 4ecn_A 563 ---FPASASLQKMVKLGLLDCVHNKVRH-----LE-AFGTNVKLTDLKLDYNQIE-----EIPEDFCAFTDQVEGLGFSH 628 (876)
T ss_dssp ---CCCHHHHTTCTTCCEEECTTSCCCB-----CC-CCCTTSEESEEECCSSCCS-----CCCTTSCEECTTCCEEECCS
T ss_pred ---cCChhhhhcCCCCCEEECCCCCccc-----ch-hhcCCCcceEEECcCCccc-----cchHHHhhccccCCEEECcC
Confidence 444 66778999999999999984 33 5667799999999999986 34555777888 99999999
Q ss_pred CCCChHHHHHHHHHhhcC--CCCCEEEccCCCCChHHHHHHHHhhh-cCccccceeeccCCCCChhHHHHHHH-HHHcCC
Q 007577 312 NYGGALGANALAKGLEGN--KSLRELHLHGNSIGDEGIRALMSGLS-SRKGKLAVLDIGNNSISAKGAFHVAE-YIKNCK 387 (597)
Q Consensus 312 n~i~~~~~~~l~~~l~~~--~~L~~L~Ls~n~i~~~~~~~l~~~l~-~~~~~L~~L~Ls~n~l~~~~~~~l~~-~l~~~~ 387 (597)
|.++..+ ..+... ++|+.|++++|.+.+.. +.+...+. ...++|+.|++++|.++. ++. .+..++
T Consensus 629 N~L~~lp-----~~~~~~~~~~L~~L~Ls~N~l~g~i-p~l~~~l~~~~~~~L~~L~Ls~N~L~~-----lp~~~~~~l~ 697 (876)
T 4ecn_A 629 NKLKYIP-----NIFNAKSVYVMGSVDFSYNKIGSEG-RNISCSMDDYKGINASTVTLSYNEIQK-----FPTELFATGS 697 (876)
T ss_dssp SCCCSCC-----SCCCTTCSSCEEEEECCSSCTTTTS-SSCSSCTTTCCCCCEEEEECCSSCCCS-----CCHHHHHTTC
T ss_pred CCCCcCc-----hhhhccccCCCCEEECcCCcCCCcc-ccchhhhccccCCCcCEEEccCCcCCc-----cCHHHHccCC
Confidence 9987433 233344 34999999999987531 11111110 123479999999999996 444 345789
Q ss_pred CCcEEEccCCCCCcHHHHHHHHHHhc--------CCCccEEEccCCCCChHHHHHHHHHhh--cCCCcCEEECcCCCCCH
Q 007577 388 SLLWINLYMNDIGDEGAEKIADALKQ--------NRTITTIDLGGNNIHSKGASAIARVLK--DNSVITSLDLAYNPIGA 457 (597)
Q Consensus 388 ~L~~L~Ls~n~l~~~~~~~l~~~l~~--------~~~L~~L~L~~n~l~~~~~~~l~~~l~--~~~~L~~L~Ls~n~i~~ 457 (597)
+|++|+|++|.++. ++..+.. +++|++|+|++|+|+. ++..+. .+++|+.|+|++|.++.
T Consensus 698 ~L~~L~Ls~N~L~~-----ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L~~-----lp~~l~~~~l~~L~~L~Ls~N~L~~ 767 (876)
T 4ecn_A 698 PISTIILSNNLMTS-----IPENSLKPKDGNYKNTYLLTTIDLRFNKLTS-----LSDDFRATTLPYLSNMDVSYNCFSS 767 (876)
T ss_dssp CCSEEECCSCCCSC-----CCTTSSSCTTSCCTTGGGCCEEECCSSCCCC-----CCGGGSTTTCTTCCEEECCSSCCSS
T ss_pred CCCEEECCCCcCCc-----cChHHhccccccccccCCccEEECCCCCCcc-----chHHhhhccCCCcCEEEeCCCCCCc
Confidence 99999999999874 3332222 2389999999999984 445555 78999999999999975
Q ss_pred HHHHHHHHHHhhCCCcCEEecCC------CCCChhHHHHHHHHHhcCCCccEEEccCCCCChHHHHHHHHHHhhcCcccc
Q 007577 458 DGAKALSEVLKFHGNINTLKLGW------CQIGASGAEFVADMLRYNNTISILDLRANGLRDEGAKCLAQSFKVVNEALT 531 (597)
Q Consensus 458 ~~~~~l~~~l~~~~~L~~L~L~~------n~i~~~~~~~l~~~l~~~~~L~~L~l~~n~i~~~~~~~l~~~l~~~n~~L~ 531 (597)
+...+..+++|+.|+|++ |.+.... ...+..+++|+.|++++|.++..... + .++|+
T Consensus 768 -----lp~~l~~L~~L~~L~Ls~N~~ls~N~l~~~i----p~~l~~L~~L~~L~Ls~N~L~~Ip~~-----l---~~~L~ 830 (876)
T 4ecn_A 768 -----FPTQPLNSSQLKAFGIRHQRDAEGNRILRQW----PTGITTCPSLIQLQIGSNDIRKVDEK-----L---TPQLY 830 (876)
T ss_dssp -----CCCGGGGCTTCCEEECCCCBCTTCCBCCCCC----CTTGGGCSSCCEEECCSSCCCBCCSC-----C---CSSSC
T ss_pred -----cchhhhcCCCCCEEECCCCCCcccccccccC----hHHHhcCCCCCEEECCCCCCCccCHh-----h---cCCCC
Confidence 344566789999999977 5555442 23456689999999999999653211 1 15799
Q ss_pred EEEccCCCCChHHHHHHHHHHHhCCCCceeEEEcccCccch
Q 007577 532 SIDLAFNEIRDDGAFAIAQALKANEDVAVTSLNLANNFLTK 572 (597)
Q Consensus 532 ~L~Ls~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~N~i~~ 572 (597)
.|||++|++....+..+..... +..+.|.+|...+
T Consensus 831 ~LdLs~N~l~~i~~~~~~~~~~------~~~~~L~~n~~~~ 865 (876)
T 4ecn_A 831 ILDIADNPNISIDVTSVCPYIE------AGMYVLLYDKTQD 865 (876)
T ss_dssp EEECCSCTTCEEECGGGHHHHH------TTCCEEECCTTSE
T ss_pred EEECCCCCCCccChHHcccccc------chheeecCCCccc
Confidence 9999999998766666666554 4455666665544
No 29
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.93 E-value=5.1e-28 Score=260.81 Aligned_cols=366 Identities=14% Similarity=0.143 Sum_probs=241.0
Q ss_pred CCCcEEEcCCCCCCHHHHHHHHHHhccCCCccEEEeccCCCCHHHHHHHHHHhhhCCCccEEEccCCCCChhHHHHHHHH
Q 007577 162 RAFSSVDMSGRNFGDEGLFFLAESLGYNQTAEEVSFAANGITAAGIKAFDGVLQSNIALKTLNLSGNPIGDEGVKCLCDI 241 (597)
Q Consensus 162 ~~L~~L~Ls~~~l~~~~~~~l~~~l~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~ 241 (597)
+++++|++++|.+.... +..+..+++|++|++++|+++... +..+..+++|++|++++|.++... ..
T Consensus 21 ~~L~~L~Ls~n~i~~~~----~~~~~~l~~L~~L~Ls~n~l~~~~----~~~~~~l~~L~~L~Ls~N~l~~lp-----~~ 87 (520)
T 2z7x_B 21 QKTTILNISQNYISELW----TSDILSLSKLRILIISHNRIQYLD----ISVFKFNQELEYLDLSHNKLVKIS-----CH 87 (520)
T ss_dssp TTCSEEECCSSCCCCCC----HHHHTTCTTCCEEECCSSCCCEEE----GGGGTTCTTCCEEECCSSCCCEEE-----CC
T ss_pred ccccEEECCCCcccccC----hhhccccccccEEecCCCccCCcC----hHHhhcccCCCEEecCCCceeecC-----cc
Confidence 68999999999887642 356778899999999999987542 345667889999999999988532 22
Q ss_pred HhcCCCcCEEEecCCCCChHHHHHHHHHHHcCCCccEEEeccCCCChhhHHHHHHHHhhCCCc--cEEEcCCCCC--ChH
Q 007577 242 LVDNAGVERLQLSSVDLRDEGAKAIAELLKNNSILRVLELNNNMIDYSGFTSLAEALLENSTI--RSLHLNGNYG--GAL 317 (597)
Q Consensus 242 l~~~~~L~~L~Ls~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L--~~L~L~~n~i--~~~ 317 (597)
.+++|++|++++|.++... ++..+..+++|++|++++|.++.. .+..+++| ++|++++|.+ ...
T Consensus 88 --~l~~L~~L~L~~N~l~~~~---~p~~~~~l~~L~~L~L~~n~l~~~-------~~~~l~~L~L~~L~l~~n~l~~~~~ 155 (520)
T 2z7x_B 88 --PTVNLKHLDLSFNAFDALP---ICKEFGNMSQLKFLGLSTTHLEKS-------SVLPIAHLNISKVLLVLGETYGEKE 155 (520)
T ss_dssp --CCCCCSEEECCSSCCSSCC---CCGGGGGCTTCCEEEEEESSCCGG-------GGGGGTTSCEEEEEEEECTTTTSSC
T ss_pred --ccCCccEEeccCCcccccc---chhhhccCCcceEEEecCcccchh-------hccccccceeeEEEeeccccccccc
Confidence 5799999999999987521 234566779999999999999753 24456677 9999999887 322
Q ss_pred HHHHHHH----------------------HhhcCCCCCEEEccCCCC--ChHHHHHHHHhhhcCccccceeeccCCCCCh
Q 007577 318 GANALAK----------------------GLEGNKSLRELHLHGNSI--GDEGIRALMSGLSSRKGKLAVLDIGNNSISA 373 (597)
Q Consensus 318 ~~~~l~~----------------------~l~~~~~L~~L~Ls~n~i--~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~ 373 (597)
....+.. .+..+++|+.|++++|.. .-..+......+ ...++|+.|++++|.++.
T Consensus 156 ~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l-~~l~~L~~L~l~~~~l~~ 234 (520)
T 2z7x_B 156 DPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKL-QTNPKLSNLTLNNIETTW 234 (520)
T ss_dssp CTTTTTTCCEEEEEEECCSSSCCCCCCCCCCTTCSEEEECCEEECCSTTTTHHHHHHHHGG-GGCTTCCEEEEEEEEEEH
T ss_pred ccccccccccceEEEEeccCcchhhhhhhhhhcccceeeccccccccccccceeecchhhh-ccccchhhccccccccCH
Confidence 2211111 122356777777777751 111122222233 345689999999999988
Q ss_pred hHHHHHHHHHHcCCCCcEEEccCCCCCcH---HH-------------------------HHHHHHH--------------
Q 007577 374 KGAFHVAEYIKNCKSLLWINLYMNDIGDE---GA-------------------------EKIADAL-------------- 411 (597)
Q Consensus 374 ~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~---~~-------------------------~~l~~~l-------------- 411 (597)
.....+...+. .++|++|++++|.+++. .+ ..+...+
T Consensus 235 ~~~~~~~~~~~-~~~L~~L~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~~~p~~~~~~~~~~~~L~~L~l~~n~ 313 (520)
T 2z7x_B 235 NSFIRILQLVW-HTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYIYEIFSNMNIKNFTVSGTR 313 (520)
T ss_dssp HHHHHHHHHHH-TSSCSEEEEEEEEEESCCCCCCCCCCSCCCCEEEEEEEEECCCCSCTHHHHHHHHTCCCSEEEEESSC
T ss_pred HHHHHHHHHhh-hCcccEEEeecccccCccccchhhcccccCceeEeccccccceecchhhhhcccccCceeEEEcCCCc
Confidence 76665555443 46788888887765421 00 1122211
Q ss_pred -------hcCCCccEEEccCCCCChHHHHHHHHHhhcCCCcCEEECcCCCCCHHHHHHHHHHHhhCCCcCEEecCCCCCC
Q 007577 412 -------KQNRTITTIDLGGNNIHSKGASAIARVLKDNSVITSLDLAYNPIGADGAKALSEVLKFHGNINTLKLGWCQIG 484 (597)
Q Consensus 412 -------~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~i~ 484 (597)
..+++|++|++++|.+++.. ...+..+++|++|++++|.++.. ..+...+..+++|++|++++|.++
T Consensus 314 l~~~~~~~~l~~L~~L~Ls~n~l~~~~----~~~~~~l~~L~~L~L~~N~l~~l--~~~~~~~~~l~~L~~L~Ls~N~l~ 387 (520)
T 2z7x_B 314 MVHMLCPSKISPFLHLDFSNNLLTDTV----FENCGHLTELETLILQMNQLKEL--SKIAEMTTQMKSLQQLDISQNSVS 387 (520)
T ss_dssp CCCCCCCSSCCCCCEEECCSSCCCTTT----TTTCCCCSSCCEEECCSSCCCBH--HHHHHHHTTCTTCCEEECCSSCCB
T ss_pred cccccchhhCCcccEEEeECCccChhh----hhhhccCCCCCEEEccCCccCcc--ccchHHHhhCCCCCEEECCCCcCC
Confidence 34667788888888777632 23345667888888888877642 334455667788888888888876
Q ss_pred h-hHHHHHHHHHhcCCCccEEEccCCCCChHHHHHHHHHHhhcCccccEEEccCCCCChHHHHHHHHHHHhCCCCceeEE
Q 007577 485 A-SGAEFVADMLRYNNTISILDLRANGLRDEGAKCLAQSFKVVNEALTSIDLAFNEIRDDGAFAIAQALKANEDVAVTSL 563 (597)
Q Consensus 485 ~-~~~~~l~~~l~~~~~L~~L~l~~n~i~~~~~~~l~~~l~~~n~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~~L~~L 563 (597)
. .... .+..+++|++|++++|.+++..+..+ .++|+.|++++|+|+. .+..+... .+|+.|
T Consensus 388 ~~l~~~----~~~~l~~L~~L~Ls~N~l~~~~~~~l-------~~~L~~L~Ls~N~l~~-ip~~~~~l------~~L~~L 449 (520)
T 2z7x_B 388 YDEKKG----DCSWTKSLLSLNMSSNILTDTIFRCL-------PPRIKVLDLHSNKIKS-IPKQVVKL------EALQEL 449 (520)
T ss_dssp CCGGGC----SCCCCTTCCEEECCSSCCCGGGGGSC-------CTTCCEEECCSSCCCC-CCGGGGGC------TTCCEE
T ss_pred cccccc----hhccCccCCEEECcCCCCCcchhhhh-------cccCCEEECCCCcccc-cchhhhcC------CCCCEE
Confidence 5 2211 23445788888888888775432221 1568888888888873 22223222 348899
Q ss_pred EcccCccchhhHHHH
Q 007577 564 NLANNFLTKFGQSAL 578 (597)
Q Consensus 564 ~L~~N~i~~~~~~~l 578 (597)
+|++|+|+.+....+
T Consensus 450 ~L~~N~l~~l~~~~~ 464 (520)
T 2z7x_B 450 NVASNQLKSVPDGIF 464 (520)
T ss_dssp ECCSSCCCCCCTTTT
T ss_pred ECCCCcCCccCHHHh
Confidence 999998887665533
No 30
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.93 E-value=2.3e-28 Score=265.97 Aligned_cols=162 Identities=17% Similarity=0.199 Sum_probs=109.0
Q ss_pred HcCCCCcEEEccCCCCCcHHHHHHHHHHhcCCCccEEEccCCCCChHHHHHHHHHhhcCCCcCEEECcCCCCCHHHHHHH
Q 007577 384 KNCKSLLWINLYMNDIGDEGAEKIADALKQNRTITTIDLGGNNIHSKGASAIARVLKDNSVITSLDLAYNPIGADGAKAL 463 (597)
Q Consensus 384 ~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l 463 (597)
..+++|++|++++|.+++. ++..+..+++|++|++++|+++... .++..+..+++|++|++++|.++.....
T Consensus 350 ~~l~~L~~L~l~~n~l~~~----~~~~~~~l~~L~~L~L~~N~l~~~~--~~~~~~~~l~~L~~L~l~~N~l~~~~~~-- 421 (562)
T 3a79_B 350 PSPSSFTFLNFTQNVFTDS----VFQGCSTLKRLQTLILQRNGLKNFF--KVALMTKNMSSLETLDVSLNSLNSHAYD-- 421 (562)
T ss_dssp SSCCCCCEEECCSSCCCTT----TTTTCCSCSSCCEEECCSSCCCBTT--HHHHTTTTCTTCCEEECTTSCCBSCCSS--
T ss_pred cCCCCceEEECCCCccccc----hhhhhcccCCCCEEECCCCCcCCcc--cchhhhcCCCCCCEEECCCCcCCCccCh--
Confidence 4567888888888888764 3445667788888888888887622 2344566778888888888887641110
Q ss_pred HHHHhhCCCcCEEecCCCCCChhHHHHHHHHHhcCCCccEEEccCCCCChHHHHHHHHHHhhcCccccEEEccCCCCChH
Q 007577 464 SEVLKFHGNINTLKLGWCQIGASGAEFVADMLRYNNTISILDLRANGLRDEGAKCLAQSFKVVNEALTSIDLAFNEIRDD 543 (597)
Q Consensus 464 ~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~n~i~~~~~~~l~~~l~~~n~~L~~L~Ls~n~i~~~ 543 (597)
..+..+++|++|++++|.+++..+..+. ++|+.|++++|.|+..... +.. .++|++|++++|+++..
T Consensus 422 -~~~~~l~~L~~L~l~~n~l~~~~~~~l~------~~L~~L~L~~N~l~~ip~~-~~~-----l~~L~~L~L~~N~l~~l 488 (562)
T 3a79_B 422 -RTCAWAESILVLNLSSNMLTGSVFRCLP------PKVKVLDLHNNRIMSIPKD-VTH-----LQALQELNVASNQLKSV 488 (562)
T ss_dssp -CCCCCCTTCCEEECCSSCCCGGGGSSCC------TTCSEEECCSSCCCCCCTT-TTS-----SCCCSEEECCSSCCCCC
T ss_pred -hhhcCcccCCEEECCCCCCCcchhhhhc------CcCCEEECCCCcCcccChh-hcC-----CCCCCEEECCCCCCCCC
Confidence 1234457888889988888754322111 5899999999988743211 222 26799999999988853
Q ss_pred HHHHHHHHHHhCCCCceeEEEcccCccch
Q 007577 544 GAFAIAQALKANEDVAVTSLNLANNFLTK 572 (597)
Q Consensus 544 ~~~~l~~~l~~~~~~~L~~L~L~~N~i~~ 572 (597)
....+.. . .+|+.|++++|++.-
T Consensus 489 ~~~~~~~----l--~~L~~L~l~~N~~~c 511 (562)
T 3a79_B 489 PDGVFDR----L--TSLQYIWLHDNPWDC 511 (562)
T ss_dssp CTTSTTT----C--TTCCCEECCSCCBCC
T ss_pred CHHHHhc----C--CCCCEEEecCCCcCC
Confidence 3221222 2 248999999998874
No 31
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.93 E-value=8.5e-29 Score=272.11 Aligned_cols=93 Identities=16% Similarity=0.095 Sum_probs=59.6
Q ss_pred HHhcCCCcEEEcCCCCCCHHHHHHHHHHhccCCCccEEEeccCCCCHHHHHHHHHHhhhCCCccEEEccCCCCChhHHHH
Q 007577 158 AKELRAFSSVDMSGRNFGDEGLFFLAESLGYNQTAEEVSFAANGITAAGIKAFDGVLQSNIALKTLNLSGNPIGDEGVKC 237 (597)
Q Consensus 158 ~~~~~~L~~L~Ls~~~l~~~~~~~l~~~l~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~ 237 (597)
+..+++|++|+|++|.+... .+..+..+++|++|++++|.++.... ..+..+++|++|++++|.+....
T Consensus 76 ~~~l~~L~~L~Ls~n~l~~~----~p~~~~~l~~L~~L~L~~n~l~~~~~----~~~~~l~~L~~L~L~~n~l~~~~--- 144 (606)
T 3vq2_A 76 WHGLHHLSNLILTGNPIQSF----SPGSFSGLTSLENLVAVETKLASLES----FPIGQLITLKKLNVAHNFIHSCK--- 144 (606)
T ss_dssp TTTCTTCCEEECTTCCCCCC----CTTSSTTCTTCCEEECTTSCCCCSSS----SCCTTCTTCCEEECCSSCCCCCC---
T ss_pred hhchhhcCEeECCCCccccc----ChhhcCCcccCCEEEccCCccccccc----cccCCCCCCCEEeCCCCccccee---
Confidence 34567788888887777653 24456667778888887777653221 12456677777777777775421
Q ss_pred HHHHHhcCCCcCEEEecCCCCChH
Q 007577 238 LCDILVDNAGVERLQLSSVDLRDE 261 (597)
Q Consensus 238 l~~~l~~~~~L~~L~Ls~~~l~~~ 261 (597)
++..+..+++|++|++++|.++..
T Consensus 145 lp~~~~~l~~L~~L~Ls~n~l~~~ 168 (606)
T 3vq2_A 145 LPAYFSNLTNLVHVDLSYNYIQTI 168 (606)
T ss_dssp CCGGGGTCTTCCEEECCSSCCCEE
T ss_pred chHhHhhcCCCCEEEccCCcceec
Confidence 234455667777777777776654
No 32
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.93 E-value=5.4e-29 Score=271.61 Aligned_cols=364 Identities=14% Similarity=0.116 Sum_probs=216.3
Q ss_pred HHhcCCCcEEEcCCCCCCHHHHHHHHHHhccCCCccEEEeccCCCCHHHHHHHHHHhhhCCCccEEEccCCCCChhHHHH
Q 007577 158 AKELRAFSSVDMSGRNFGDEGLFFLAESLGYNQTAEEVSFAANGITAAGIKAFDGVLQSNIALKTLNLSGNPIGDEGVKC 237 (597)
Q Consensus 158 ~~~~~~L~~L~Ls~~~l~~~~~~~l~~~l~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~ 237 (597)
+..+++|++|++++|.+.... ...+..+++|++|++++|.++... ...+..+++|++|++++|.+......
T Consensus 48 ~~~l~~L~~L~Ls~n~i~~i~----~~~~~~l~~L~~L~L~~n~l~~~~----~~~~~~l~~L~~L~L~~n~l~~l~~~- 118 (570)
T 2z63_A 48 FFSFPELQVLDLSRCEIQTIE----DGAYQSLSHLSTLILTGNPIQSLA----LGAFSGLSSLQKLVAVETNLASLENF- 118 (570)
T ss_dssp TTTCSSCCEEECTTCCCCEEC----TTTTTTCTTCCEEECTTCCCCEEC----TTTTTTCTTCCEEECTTSCCCCSTTC-
T ss_pred hhCCCCceEEECCCCcCCccC----cccccCchhCCEEeCcCCcCCccC----HhhhcCccccccccccccccccCCCc-
Confidence 456788888888888776531 345667788888888888876432 23455677888888888877654221
Q ss_pred HHHHHhcCCCcCEEEecCCCCChHHHHHHHHHHHcCCCccEEEeccCCCChhhHHHHHHHHhhCCCc----cEEEcCCCC
Q 007577 238 LCDILVDNAGVERLQLSSVDLRDEGAKAIAELLKNNSILRVLELNNNMIDYSGFTSLAEALLENSTI----RSLHLNGNY 313 (597)
Q Consensus 238 l~~~l~~~~~L~~L~Ls~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L----~~L~L~~n~ 313 (597)
.+..+++|++|++++|.++... ++..+.++++|++|++++|+++...... +..+.+| +.|++++|.
T Consensus 119 ---~~~~l~~L~~L~L~~n~l~~~~---lp~~~~~l~~L~~L~l~~n~l~~~~~~~----~~~l~~L~~~~~~L~l~~n~ 188 (570)
T 2z63_A 119 ---PIGHLKTLKELNVAHNLIQSFK---LPEYFSNLTNLEHLDLSSNKIQSIYCTD----LRVLHQMPLLNLSLDLSLNP 188 (570)
T ss_dssp ---SCTTCTTCCEEECCSSCCCCCC---CCGGGGGCTTCCEEECTTSCCCEECGGG----GHHHHTCTTCCCEEECTTCC
T ss_pred ---cccccccccEEecCCCccceec---ChhhhcccCCCCEEeCcCCccceecHHH----ccchhccchhhhhcccCCCC
Confidence 2445788888888888876521 2344566788888888888876532111 1122222 445554444
Q ss_pred CChHHHHH------------------------------------------------------------------------
Q 007577 314 GGALGANA------------------------------------------------------------------------ 321 (597)
Q Consensus 314 i~~~~~~~------------------------------------------------------------------------ 321 (597)
+.......
T Consensus 189 l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~~ 268 (570)
T 2z63_A 189 MNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLD 268 (570)
T ss_dssp CCEECTTTTTTCEEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEECCCCSSCEECCTTTTGGGGGSEEEEEEEEETT
T ss_pred ceecCHHHhccCcceeEecccccccccchhhhhcCccccceeeeccccccCchhhhhcchhhhccccccchhhhhhhcch
Confidence 33211100
Q ss_pred -----HHHHhhcCCCCCEEEccCCCCChHHHHHHHHhhh-----------------------------------------
Q 007577 322 -----LAKGLEGNKSLRELHLHGNSIGDEGIRALMSGLS----------------------------------------- 355 (597)
Q Consensus 322 -----l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~----------------------------------------- 355 (597)
.+..+..+++|++|++++|.+.. +...+.
T Consensus 269 ~~~~~~~~~~~~l~~L~~L~l~~~~l~~-----l~~~~~~~~L~~L~l~~n~~~~l~~~~l~~L~~L~l~~n~~~~~~~~ 343 (570)
T 2z63_A 269 YYLDDIIDLFNCLTNVSSFSLVSVTIER-----VKDFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSE 343 (570)
T ss_dssp EEESCSTTTTGGGTTCSEEEEESCEECS-----CCBCCSCCCCSEEEEESCBCSSCCBCBCSSCCEEEEESCBSCCBCCC
T ss_pred hhhhhchhhhcCcCcccEEEecCccchh-----hhhhhccCCccEEeeccCcccccCcccccccCEEeCcCCcccccccc
Confidence 00112233455555555544332 000000
Q ss_pred cCccccceeeccCCCCChhHHHHHHHHHHcCCCCcEEEccCCCCCcHHHHHHHHHHhcCCCccEEEccCCCCChHHHHHH
Q 007577 356 SRKGKLAVLDIGNNSISAKGAFHVAEYIKNCKSLLWINLYMNDIGDEGAEKIADALKQNRTITTIDLGGNNIHSKGASAI 435 (597)
Q Consensus 356 ~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l 435 (597)
..+++|+.|++++|.++..+. .+..+..+++|++|++++|.+... ...+..+++|++|++++|.++....
T Consensus 344 ~~~~~L~~L~l~~n~l~~~~~--~~~~~~~~~~L~~L~l~~n~l~~~-----~~~~~~l~~L~~L~l~~n~l~~~~~--- 413 (570)
T 2z63_A 344 VDLPSLEFLDLSRNGLSFKGC--CSQSDFGTTSLKYLDLSFNGVITM-----SSNFLGLEQLEHLDFQHSNLKQMSE--- 413 (570)
T ss_dssp CBCTTCCEEECCSSCCBEEEE--EEHHHHTCSCCCEEECCSCSEEEE-----EEEEETCTTCCEEECTTSEEESCTT---
T ss_pred ccCCCCCEEeCcCCccCcccc--ccccccccCccCEEECCCCccccc-----cccccccCCCCEEEccCCccccccc---
Confidence 123455566666665554210 023455666666666666665542 1124456677777777776554211
Q ss_pred HHHhhcCCCcCEEECcCCCCCHHHHHHHHHHHhhCCCcCEEecCCCCCChhHHHHHHHHHhcCCCccEEEccCCCCChHH
Q 007577 436 ARVLKDNSVITSLDLAYNPIGADGAKALSEVLKFHGNINTLKLGWCQIGASGAEFVADMLRYNNTISILDLRANGLRDEG 515 (597)
Q Consensus 436 ~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~n~i~~~~ 515 (597)
...+..+++|++|++++|.+.... ...+..+++|++|++++|.+++.. +...+..+++|++|++++|.+++..
T Consensus 414 ~~~~~~l~~L~~L~l~~n~l~~~~----~~~~~~l~~L~~L~l~~n~l~~~~---~p~~~~~l~~L~~L~l~~n~l~~~~ 486 (570)
T 2z63_A 414 FSVFLSLRNLIYLDISHTHTRVAF----NGIFNGLSSLEVLKMAGNSFQENF---LPDIFTELRNLTFLDLSQCQLEQLS 486 (570)
T ss_dssp SCTTTTCTTCCEEECTTSCCEECC----TTTTTTCTTCCEEECTTCEEGGGE---ECSCCTTCTTCCEEECTTSCCCEEC
T ss_pred hhhhhcCCCCCEEeCcCCcccccc----hhhhhcCCcCcEEECcCCcCcccc---chhhhhcccCCCEEECCCCccccCC
Confidence 012455678888888888765432 233455688888888888875311 1234556789999999999888765
Q ss_pred HHHHHHHHhhcCccccEEEccCCCCChHHHHHHHHHHHhCCCCceeEEEcccCccchh
Q 007577 516 AKCLAQSFKVVNEALTSIDLAFNEIRDDGAFAIAQALKANEDVAVTSLNLANNFLTKF 573 (597)
Q Consensus 516 ~~~l~~~l~~~n~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~N~i~~~ 573 (597)
+..+..+ ++|++|++++|++++..+..+... .+|+.|++++|+++..
T Consensus 487 ~~~~~~l-----~~L~~L~l~~n~l~~~~~~~~~~l------~~L~~L~l~~N~~~~~ 533 (570)
T 2z63_A 487 PTAFNSL-----SSLQVLNMASNQLKSVPDGIFDRL------TSLQKIWLHTNPWDCS 533 (570)
T ss_dssp TTTTTTC-----TTCCEEECCSSCCSCCCTTTTTTC------TTCCEEECCSSCBCCC
T ss_pred hhhhhcc-----cCCCEEeCCCCcCCCCCHHHhhcc------cCCcEEEecCCcccCC
Confidence 5555443 779999999998886544444332 3489999999988753
No 33
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.92 E-value=4e-28 Score=270.44 Aligned_cols=363 Identities=17% Similarity=0.132 Sum_probs=193.6
Q ss_pred cCCCcEEEcCCCCCCHHHHHHHHHHhccC--CCccEEEeccCCCCHHHHHHHHHHhhhCCCccEEEccCCCCChhHHHHH
Q 007577 161 LRAFSSVDMSGRNFGDEGLFFLAESLGYN--QTAEEVSFAANGITAAGIKAFDGVLQSNIALKTLNLSGNPIGDEGVKCL 238 (597)
Q Consensus 161 ~~~L~~L~Ls~~~l~~~~~~~l~~~l~~~--~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l 238 (597)
.++|++|++++|.+.... +..+..+ ++|+.|++++|.++... ...+..+++|++|++++|.+....
T Consensus 221 ~~~L~~L~L~~n~l~~~~----~~~~~~l~~~~L~~L~Ls~n~l~~~~----~~~~~~l~~L~~L~L~~n~l~~~~---- 288 (680)
T 1ziw_A 221 NTSIRNLSLSNSQLSTTS----NTTFLGLKWTNLTMLDLSYNNLNVVG----NDSFAWLPQLEYFFLEYNNIQHLF---- 288 (680)
T ss_dssp TSCCCEEECTTSCCCEEC----TTTTGGGGGSCCCEEECTTSCCCEEC----TTTTTTCTTCCEEECCSCCBSEEC----
T ss_pred hccccEEEccCCcccccC----hhHhhccCcCCCCEEECCCCCcCccC----cccccCcccccEeeCCCCccCccC----
Confidence 367777777777765432 2223333 34777777777765432 223445667777777777665432
Q ss_pred HHHHhcCCCcCEEEecCCCCChH-HHHHHHH----HHHcCCCccEEEeccCCCChhhHHHHHHHHhhCCCcc--------
Q 007577 239 CDILVDNAGVERLQLSSVDLRDE-GAKAIAE----LLKNNSILRVLELNNNMIDYSGFTSLAEALLENSTIR-------- 305 (597)
Q Consensus 239 ~~~l~~~~~L~~L~Ls~~~l~~~-~~~~l~~----~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~-------- 305 (597)
...+..+++|++|++++|..... ....++. .+..+++|++|++++|.++... +..+..+++|+
T Consensus 289 ~~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l~~L~~L~l~~n~l~~~~----~~~~~~l~~L~~L~Ls~n~ 364 (680)
T 1ziw_A 289 SHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIK----SNMFTGLINLKYLSLSNSF 364 (680)
T ss_dssp TTTTTTCTTCCEEECTTCBCCC------CCEECTTTTTTCTTCCEEECCSCCBCCCC----TTTTTTCTTCCEEECTTCB
T ss_pred hhhhcCCCCccEEeccchhhhcccccccccccChhhcccCCCCCEEECCCCccCCCC----hhHhccccCCcEEECCCCc
Confidence 22233345555555554432210 0000100 1233455555555555543211 12233344444
Q ss_pred --------------------EEEcCCCCCChHHHHHHHHHhhcCCCCCEEEccCCCCChHHHHHHHHhhhcCccccceee
Q 007577 306 --------------------SLHLNGNYGGALGANALAKGLEGNKSLRELHLHGNSIGDEGIRALMSGLSSRKGKLAVLD 365 (597)
Q Consensus 306 --------------------~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~ 365 (597)
.|++++|.++.... ..+..+++|+.|++++|.+.+. +.......+++|+.|+
T Consensus 365 ~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~----~~~~~l~~L~~L~L~~N~l~~~----~~~~~~~~l~~L~~L~ 436 (680)
T 1ziw_A 365 TSLRTLTNETFVSLAHSPLHILNLTKNKISKIES----DAFSWLGHLEVLDLGLNEIGQE----LTGQEWRGLENIFEIY 436 (680)
T ss_dssp SCCCEECTTTTGGGTTSCCCEEECTTSCCCEECT----TTTTTCTTCCEEECCSSCCEEE----CCSGGGTTCTTCCEEE
T ss_pred hhhhhcchhhhcccccCcCceEECCCCCCCeECh----hhhhCCCCCCEEeCCCCcCccc----cCcccccCcccccEEe
Confidence 44555554443322 2344556666666666655421 1101112334566666
Q ss_pred ccCCCCChhHHHHHHHHHHcCCCCcEEEccCCCCCcHHHHHHHHHHhcCCCccEEEccCCCCChHHHHHHHHHhhcCCCc
Q 007577 366 IGNNSISAKGAFHVAEYIKNCKSLLWINLYMNDIGDEGAEKIADALKQNRTITTIDLGGNNIHSKGASAIARVLKDNSVI 445 (597)
Q Consensus 366 Ls~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L 445 (597)
+++|.++.. .+..+..+++|++|++++|.+... ..++..+..+++|++|++++|+|+... ...+..+++|
T Consensus 437 Ls~n~l~~~----~~~~~~~~~~L~~L~l~~n~l~~~--~~~p~~~~~l~~L~~L~Ls~N~l~~i~----~~~~~~l~~L 506 (680)
T 1ziw_A 437 LSYNKYLQL----TRNSFALVPSLQRLMLRRVALKNV--DSSPSPFQPLRNLTILDLSNNNIANIN----DDMLEGLEKL 506 (680)
T ss_dssp CCSCSEEEC----CTTTTTTCTTCCEEECTTSCCBCT--TCSSCTTTTCTTCCEEECCSSCCCCCC----TTTTTTCTTC
T ss_pred cCCCCccee----ChhhhhcCcccccchhcccccccc--ccCCcccccCCCCCEEECCCCCCCcCC----hhhhcccccc
Confidence 666655441 223344566666666666655421 113344556677888888887776532 1234556778
Q ss_pred CEEECcCCCCCHHHHHHHH----HHHhhCCCcCEEecCCCCCChhHHHHHHHHHhcCCCccEEEccCCCCChHHHHHHHH
Q 007577 446 TSLDLAYNPIGADGAKALS----EVLKFHGNINTLKLGWCQIGASGAEFVADMLRYNNTISILDLRANGLRDEGAKCLAQ 521 (597)
Q Consensus 446 ~~L~Ls~n~i~~~~~~~l~----~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~n~i~~~~~~~l~~ 521 (597)
++|++++|.++......+. ..+..+++|++|++++|+++..... .+..+++|+.|++++|.++......+..
T Consensus 507 ~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~----~~~~l~~L~~L~Ls~N~l~~l~~~~~~~ 582 (680)
T 1ziw_A 507 EILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVE----VFKDLFELKIIDLGLNNLNTLPASVFNN 582 (680)
T ss_dssp CEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECCSSCCCCCCTT----TTTTCTTCCEEECCSSCCCCCCTTTTTT
T ss_pred CEEeCCCCCccccchhhccCCcchhhcCCCCCCEEECCCCCCCCCCHH----HcccccCcceeECCCCCCCcCCHhHhCC
Confidence 8888888877543211111 1145567788888888877644322 2445678888888888777543333322
Q ss_pred HHhhcCccccEEEccCCCCChHHHHHHHHHHHhCCCCceeEEEcccCccc
Q 007577 522 SFKVVNEALTSIDLAFNEIRDDGAFAIAQALKANEDVAVTSLNLANNFLT 571 (597)
Q Consensus 522 ~l~~~n~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~N~i~ 571 (597)
. ++|+.|++++|+++......+...+ .+|+.|++++|++.
T Consensus 583 l-----~~L~~L~L~~N~l~~~~~~~~~~~~-----~~L~~l~l~~N~~~ 622 (680)
T 1ziw_A 583 Q-----VSLKSLNLQKNLITSVEKKVFGPAF-----RNLTELDMRFNPFD 622 (680)
T ss_dssp C-----TTCCEEECTTSCCCBCCHHHHHHHH-----TTCSEEECTTCCCC
T ss_pred C-----CCCCEEECCCCcCCccChhHhcccc-----cccCEEEccCCCcc
Confidence 2 6688888888888766655554222 24788888877654
No 34
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.92 E-value=5.9e-27 Score=242.93 Aligned_cols=316 Identities=16% Similarity=0.115 Sum_probs=197.7
Q ss_pred cCCCcEEEcCCCCCCHHHHHHHHHHhccCCCccEEEeccCCCCHHHHHHHHHHhhhCCCccEEEccCCCCChhHHHHHHH
Q 007577 161 LRAFSSVDMSGRNFGDEGLFFLAESLGYNQTAEEVSFAANGITAAGIKAFDGVLQSNIALKTLNLSGNPIGDEGVKCLCD 240 (597)
Q Consensus 161 ~~~L~~L~Ls~~~l~~~~~~~l~~~l~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~ 240 (597)
+++++.|+++++.++... ...+..+++|+.|++++|.++.... ..+..+++|++|++++|.++... +.
T Consensus 44 l~~l~~l~l~~~~l~~l~----~~~~~~l~~L~~L~L~~n~i~~~~~----~~~~~l~~L~~L~L~~n~l~~~~----~~ 111 (390)
T 3o6n_A 44 LNNQKIVTFKNSTMRKLP----AALLDSFRQVELLNLNDLQIEEIDT----YAFAYAHTIQKLYMGFNAIRYLP----PH 111 (390)
T ss_dssp GCCCSEEEEESCEESEEC----THHHHHCCCCSEEECTTSCCCEECT----TTTTTCTTCCEEECCSSCCCCCC----TT
T ss_pred cCCceEEEecCCchhhCC----hhHhcccccCcEEECCCCcccccCh----hhccCCCCcCEEECCCCCCCcCC----HH
Confidence 577888888887766532 1234556788888888887764322 23456677888888888776542 23
Q ss_pred HHhcCCCcCEEEecCCCCChHHHHHHHHHHHcCCCccEEEeccCCCChhhHHHHHHHHhhCCCccEEEcCCCCCChHHHH
Q 007577 241 ILVDNAGVERLQLSSVDLRDEGAKAIAELLKNNSILRVLELNNNMIDYSGFTSLAEALLENSTIRSLHLNGNYGGALGAN 320 (597)
Q Consensus 241 ~l~~~~~L~~L~Ls~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~ 320 (597)
.+..+++|++|++++|.++... ...+..+++|++|++++|.++... +..+..+++|++|++++|.++..+
T Consensus 112 ~~~~l~~L~~L~L~~n~l~~l~----~~~~~~l~~L~~L~L~~n~l~~~~----~~~~~~l~~L~~L~l~~n~l~~~~-- 181 (390)
T 3o6n_A 112 VFQNVPLLTVLVLERNDLSSLP----RGIFHNTPKLTTLSMSNNNLERIE----DDTFQATTSLQNLQLSSNRLTHVD-- 181 (390)
T ss_dssp TTTTCTTCCEEECCSSCCCCCC----TTTTTTCTTCCEEECCSSCCCBCC----TTTTSSCTTCCEEECCSSCCSBCC--
T ss_pred HhcCCCCCCEEECCCCccCcCC----HHHhcCCCCCcEEECCCCccCccC----hhhccCCCCCCEEECCCCcCCccc--
Confidence 3445678888888888777531 122355677888888888775422 233456777888888887776543
Q ss_pred HHHHHhhcCCCCCEEEccCCCCChHHHHHHHHhhhcCccccceeeccCCCCChhHHHHHHHHHHcCCCCcEEEccCCCCC
Q 007577 321 ALAKGLEGNKSLRELHLHGNSIGDEGIRALMSGLSSRKGKLAVLDIGNNSISAKGAFHVAEYIKNCKSLLWINLYMNDIG 400 (597)
Q Consensus 321 ~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~ 400 (597)
+..+++|++|++++|.++.. ...+.|+.|++++|.++.. +. ...++|++|++++|.++
T Consensus 182 -----~~~l~~L~~L~l~~n~l~~~----------~~~~~L~~L~l~~n~l~~~-----~~--~~~~~L~~L~l~~n~l~ 239 (390)
T 3o6n_A 182 -----LSLIPSLFHANVSYNLLSTL----------AIPIAVEELDASHNSINVV-----RG--PVNVELTILKLQHNNLT 239 (390)
T ss_dssp -----GGGCTTCSEEECCSSCCSEE----------ECCSSCSEEECCSSCCCEE-----EC--CCCSSCCEEECCSSCCC
T ss_pred -----cccccccceeeccccccccc----------CCCCcceEEECCCCeeeec-----cc--cccccccEEECCCCCCc
Confidence 34567778888877776642 2233677777777777662 11 22467777777777776
Q ss_pred cHHHHHHHHHHhcCCCccEEEccCCCCChHHHHHHHHHhhcCCCcCEEECcCCCCCHHHHHHHHHHHhhCCCcCEEecCC
Q 007577 401 DEGAEKIADALKQNRTITTIDLGGNNIHSKGASAIARVLKDNSVITSLDLAYNPIGADGAKALSEVLKFHGNINTLKLGW 480 (597)
Q Consensus 401 ~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~L~~ 480 (597)
+. ..+..+++|++|++++|.++... +..+..+++|++|++++|.++... .....+++|++|++++
T Consensus 240 ~~------~~l~~l~~L~~L~Ls~n~l~~~~----~~~~~~l~~L~~L~L~~n~l~~~~-----~~~~~l~~L~~L~L~~ 304 (390)
T 3o6n_A 240 DT------AWLLNYPGLVEVDLSYNELEKIM----YHPFVKMQRLERLYISNNRLVALN-----LYGQPIPTLKVLDLSH 304 (390)
T ss_dssp CC------GGGGGCTTCSEEECCSSCCCEEE----SGGGTTCSSCCEEECCSSCCCEEE-----CSSSCCTTCCEEECCS
T ss_pred cc------HHHcCCCCccEEECCCCcCCCcC----hhHccccccCCEEECCCCcCcccC-----cccCCCCCCCEEECCC
Confidence 53 24556777777777777776542 233455577777777777765421 1223456777777777
Q ss_pred CCCChhHHHHHHHHHhcCCCccEEEccCCCCChHHHHHHHHHHhhcCccccEEEccCCCCChHHHHHH
Q 007577 481 CQIGASGAEFVADMLRYNNTISILDLRANGLRDEGAKCLAQSFKVVNEALTSIDLAFNEIRDDGAFAI 548 (597)
Q Consensus 481 n~i~~~~~~~l~~~l~~~~~L~~L~l~~n~i~~~~~~~l~~~l~~~n~~L~~L~Ls~n~i~~~~~~~l 548 (597)
|.++..... +. .+++|+.|++++|.|++.. +.. .++|+.|++++|.+.......+
T Consensus 305 n~l~~~~~~-~~----~l~~L~~L~L~~N~i~~~~---~~~-----~~~L~~L~l~~N~~~~~~~~~~ 359 (390)
T 3o6n_A 305 NHLLHVERN-QP----QFDRLENLYLDHNSIVTLK---LST-----HHTLKNLTLSHNDWDCNSLRAL 359 (390)
T ss_dssp SCCCCCGGG-HH----HHTTCSEEECCSSCCCCCC---CCT-----TCCCSEEECCSSCEEHHHHHHH
T ss_pred CcceecCcc-cc----ccCcCCEEECCCCccceeC---chh-----hccCCEEEcCCCCccchhHHHH
Confidence 776643221 22 2367777777777766542 111 1567777777777776554444
No 35
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.92 E-value=2.7e-28 Score=271.80 Aligned_cols=166 Identities=17% Similarity=0.184 Sum_probs=78.5
Q ss_pred CCCccEEEcCCCCCChHHHHHHHHHhhcCCCCCEEEccCCCCChHHHHHHHHhhhcCccccceeeccCCCCChhHHHHHH
Q 007577 301 NSTIRSLHLNGNYGGALGANALAKGLEGNKSLRELHLHGNSIGDEGIRALMSGLSSRKGKLAVLDIGNNSISAKGAFHVA 380 (597)
Q Consensus 301 ~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~ 380 (597)
+.+|+.|++.++.+.......++..+ ..++|++|++++|.+.+.....+. .+ ..++|+.|++++|.++.. .+
T Consensus 194 l~~L~~L~l~~~~l~~~~~~~~~~~l-~~~~L~~L~L~~n~l~~~~~~~~~-~l--~~~~L~~L~Ls~n~l~~~----~~ 265 (680)
T 1ziw_A 194 IGRLFGLFLNNVQLGPSLTEKLCLEL-ANTSIRNLSLSNSQLSTTSNTTFL-GL--KWTNLTMLDLSYNNLNVV----GN 265 (680)
T ss_dssp SSEECEEECTTCCCHHHHHHHHHHHH-TTSCCCEEECTTSCCCEECTTTTG-GG--GGSCCCEEECTTSCCCEE----CT
T ss_pred hhhhhhhhccccccChhhHHHHHHHh-hhccccEEEccCCcccccChhHhh-cc--CcCCCCEEECCCCCcCcc----Cc
Confidence 34444444444444333332332222 235566666666655443211110 00 012377777777766652 23
Q ss_pred HHHHcCCCCcEEEccCCCCCcHHHHHHHHHHhcCCCccEEEccCCCCChHH-HHHHHH----HhhcCCCcCEEECcCCCC
Q 007577 381 EYIKNCKSLLWINLYMNDIGDEGAEKIADALKQNRTITTIDLGGNNIHSKG-ASAIAR----VLKDNSVITSLDLAYNPI 455 (597)
Q Consensus 381 ~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~-~~~l~~----~l~~~~~L~~L~Ls~n~i 455 (597)
..+..+++|++|++++|.+++. .+..+..+++|++|++++|...... ...+.. .+..+++|++|++++|.+
T Consensus 266 ~~~~~l~~L~~L~L~~n~l~~~----~~~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l~~L~~L~l~~n~l 341 (680)
T 1ziw_A 266 DSFAWLPQLEYFFLEYNNIQHL----FSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDI 341 (680)
T ss_dssp TTTTTCTTCCEEECCSCCBSEE----CTTTTTTCTTCCEEECTTCBCCC------CCEECTTTTTTCTTCCEEECCSCCB
T ss_pred ccccCcccccEeeCCCCccCcc----ChhhhcCCCCccEEeccchhhhcccccccccccChhhcccCCCCCEEECCCCcc
Confidence 4456677777777777766653 2233444556666666554322100 000110 234456666666666665
Q ss_pred CHHHHHHHHHHHhhCCCcCEEecCCCC
Q 007577 456 GADGAKALSEVLKFHGNINTLKLGWCQ 482 (597)
Q Consensus 456 ~~~~~~~l~~~l~~~~~L~~L~L~~n~ 482 (597)
+.... ..+..+++|++|++++|.
T Consensus 342 ~~~~~----~~~~~l~~L~~L~Ls~n~ 364 (680)
T 1ziw_A 342 PGIKS----NMFTGLINLKYLSLSNSF 364 (680)
T ss_dssp CCCCT----TTTTTCTTCCEEECTTCB
T ss_pred CCCCh----hHhccccCCcEEECCCCc
Confidence 54221 223344566666665554
No 36
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.92 E-value=1e-26 Score=241.09 Aligned_cols=316 Identities=18% Similarity=0.164 Sum_probs=243.3
Q ss_pred CCCccEEEeccCCCCHHHHHHHHHHhhhCCCccEEEccCCCCChhHHHHHHHHHhcCCCcCEEEecCCCCChHHHHHHHH
Q 007577 189 NQTAEEVSFAANGITAAGIKAFDGVLQSNIALKTLNLSGNPIGDEGVKCLCDILVDNAGVERLQLSSVDLRDEGAKAIAE 268 (597)
Q Consensus 189 ~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~~~l~~~~~~~l~~ 268 (597)
+.+++.|+++++.++..... .+..+++|++|++++|.+.+... ..+..+++|++|++++|.++... +.
T Consensus 44 l~~l~~l~l~~~~l~~l~~~----~~~~l~~L~~L~L~~n~i~~~~~----~~~~~l~~L~~L~L~~n~l~~~~----~~ 111 (390)
T 3o6n_A 44 LNNQKIVTFKNSTMRKLPAA----LLDSFRQVELLNLNDLQIEEIDT----YAFAYAHTIQKLYMGFNAIRYLP----PH 111 (390)
T ss_dssp GCCCSEEEEESCEESEECTH----HHHHCCCCSEEECTTSCCCEECT----TTTTTCTTCCEEECCSSCCCCCC----TT
T ss_pred cCCceEEEecCCchhhCChh----HhcccccCcEEECCCCcccccCh----hhccCCCCcCEEECCCCCCCcCC----HH
Confidence 47999999999987754332 34567899999999999987532 24456799999999999998752 33
Q ss_pred HHHcCCCccEEEeccCCCChhhHHHHHHHHhhCCCccEEEcCCCCCChHHHHHHHHHhhcCCCCCEEEccCCCCChHHHH
Q 007577 269 LLKNNSILRVLELNNNMIDYSGFTSLAEALLENSTIRSLHLNGNYGGALGANALAKGLEGNKSLRELHLHGNSIGDEGIR 348 (597)
Q Consensus 269 ~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~ 348 (597)
.+..+++|++|++++|.++.-. ...+..+++|++|++++|.++.... ..+..+++|++|++++|.++..+.
T Consensus 112 ~~~~l~~L~~L~L~~n~l~~l~----~~~~~~l~~L~~L~L~~n~l~~~~~----~~~~~l~~L~~L~l~~n~l~~~~~- 182 (390)
T 3o6n_A 112 VFQNVPLLTVLVLERNDLSSLP----RGIFHNTPKLTTLSMSNNNLERIED----DTFQATTSLQNLQLSSNRLTHVDL- 182 (390)
T ss_dssp TTTTCTTCCEEECCSSCCCCCC----TTTTTTCTTCCEEECCSSCCCBCCT----TTTSSCTTCCEEECCSSCCSBCCG-
T ss_pred HhcCCCCCCEEECCCCccCcCC----HHHhcCCCCCcEEECCCCccCccCh----hhccCCCCCCEEECCCCcCCcccc-
Confidence 4566799999999999986321 2224678999999999999876543 346789999999999999887431
Q ss_pred HHHHhhhcCccccceeeccCCCCChhHHHHHHHHHHcCCCCcEEEccCCCCCcHHHHHHHHHHhcCCCccEEEccCCCCC
Q 007577 349 ALMSGLSSRKGKLAVLDIGNNSISAKGAFHVAEYIKNCKSLLWINLYMNDIGDEGAEKIADALKQNRTITTIDLGGNNIH 428 (597)
Q Consensus 349 ~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~ 428 (597)
...++|+.|++++|.++.. ...++|++|++++|.++... . ...++|++|++++|.++
T Consensus 183 -------~~l~~L~~L~l~~n~l~~~---------~~~~~L~~L~l~~n~l~~~~-----~--~~~~~L~~L~l~~n~l~ 239 (390)
T 3o6n_A 183 -------SLIPSLFHANVSYNLLSTL---------AIPIAVEELDASHNSINVVR-----G--PVNVELTILKLQHNNLT 239 (390)
T ss_dssp -------GGCTTCSEEECCSSCCSEE---------ECCSSCSEEECCSSCCCEEE-----C--CCCSSCCEEECCSSCCC
T ss_pred -------ccccccceeeccccccccc---------CCCCcceEEECCCCeeeecc-----c--cccccccEEECCCCCCc
Confidence 3446899999999998872 34578999999999988631 1 23579999999999998
Q ss_pred hHHHHHHHHHhhcCCCcCEEECcCCCCCHHHHHHHHHHHhhCCCcCEEecCCCCCChhHHHHHHHHHhcCCCccEEEccC
Q 007577 429 SKGASAIARVLKDNSVITSLDLAYNPIGADGAKALSEVLKFHGNINTLKLGWCQIGASGAEFVADMLRYNNTISILDLRA 508 (597)
Q Consensus 429 ~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~ 508 (597)
+. ..+..+++|++|++++|.++.... ..+..+++|++|++++|.++.... .+..+++|++|++++
T Consensus 240 ~~------~~l~~l~~L~~L~Ls~n~l~~~~~----~~~~~l~~L~~L~L~~n~l~~~~~-----~~~~l~~L~~L~L~~ 304 (390)
T 3o6n_A 240 DT------AWLLNYPGLVEVDLSYNELEKIMY----HPFVKMQRLERLYISNNRLVALNL-----YGQPIPTLKVLDLSH 304 (390)
T ss_dssp CC------GGGGGCTTCSEEECCSSCCCEEES----GGGTTCSSCCEEECCSSCCCEEEC-----SSSCCTTCCEEECCS
T ss_pred cc------HHHcCCCCccEEECCCCcCCCcCh----hHccccccCCEEECCCCcCcccCc-----ccCCCCCCCEEECCC
Confidence 74 346778999999999999986532 344567999999999999976432 224578999999999
Q ss_pred CCCChHHHHHHHHHHhhcCccccEEEccCCCCChHHHHHHHHHHHhCCCCceeEEEcccCccchhhHHHH
Q 007577 509 NGLRDEGAKCLAQSFKVVNEALTSIDLAFNEIRDDGAFAIAQALKANEDVAVTSLNLANNFLTKFGQSAL 578 (597)
Q Consensus 509 n~i~~~~~~~l~~~l~~~n~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~N~i~~~~~~~l 578 (597)
|.++... ..+... ++|++|++++|.|+... +... .+|+.|++++|+++......+
T Consensus 305 n~l~~~~-~~~~~l-----~~L~~L~L~~N~i~~~~-------~~~~--~~L~~L~l~~N~~~~~~~~~~ 359 (390)
T 3o6n_A 305 NHLLHVE-RNQPQF-----DRLENLYLDHNSIVTLK-------LSTH--HTLKNLTLSHNDWDCNSLRAL 359 (390)
T ss_dssp SCCCCCG-GGHHHH-----TTCSEEECCSSCCCCCC-------CCTT--CCCSEEECCSSCEEHHHHHHH
T ss_pred CcceecC-cccccc-----CcCCEEECCCCccceeC-------chhh--ccCCEEEcCCCCccchhHHHH
Confidence 9988643 234444 77999999999998653 2222 359999999999987654433
No 37
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.91 E-value=2e-27 Score=253.30 Aligned_cols=301 Identities=15% Similarity=0.129 Sum_probs=142.5
Q ss_pred CCCcEEEcCCCCCCHHHHHHHHHHhccCCCccEEEeccCCCCHHHHHHHHHHhhhCCCccEEEccCCCCChhHHHHHHHH
Q 007577 162 RAFSSVDMSGRNFGDEGLFFLAESLGYNQTAEEVSFAANGITAAGIKAFDGVLQSNIALKTLNLSGNPIGDEGVKCLCDI 241 (597)
Q Consensus 162 ~~L~~L~Ls~~~l~~~~~~~l~~~l~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~ 241 (597)
+++++|+|++|.+.... ...+..+++|++|+|++|.++... +..+..+++|++|+|++|.++.... ..
T Consensus 32 ~~l~~L~L~~n~l~~~~----~~~~~~l~~L~~L~L~~n~i~~~~----~~~~~~l~~L~~L~L~~n~l~~~~~----~~ 99 (477)
T 2id5_A 32 TETRLLDLGKNRIKTLN----QDEFASFPHLEELELNENIVSAVE----PGAFNNLFNLRTLGLRSNRLKLIPL----GV 99 (477)
T ss_dssp TTCSEEECCSSCCCEEC----TTTTTTCTTCCEEECTTSCCCEEC----TTTTTTCTTCCEEECCSSCCCSCCT----TS
T ss_pred CCCcEEECCCCccceEC----HhHccCCCCCCEEECCCCccCEeC----hhhhhCCccCCEEECCCCcCCccCc----cc
Confidence 45666677666665431 234555666666666666655431 2234455666666666666654321 12
Q ss_pred HhcCCCcCEEEecCCCCChHHHHHHHHHHHcCCCccEEEeccCCCChhhHHHHHHHHhhCCCccEEEcCCCCCChHHHHH
Q 007577 242 LVDNAGVERLQLSSVDLRDEGAKAIAELLKNNSILRVLELNNNMIDYSGFTSLAEALLENSTIRSLHLNGNYGGALGANA 321 (597)
Q Consensus 242 l~~~~~L~~L~Ls~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~ 321 (597)
+..+++|++|++++|.++.. .+..+..+++|++|++++|.++... +..+..+++|++|++++|.++....
T Consensus 100 ~~~l~~L~~L~Ls~n~i~~~----~~~~~~~l~~L~~L~l~~n~l~~~~----~~~~~~l~~L~~L~l~~n~l~~~~~-- 169 (477)
T 2id5_A 100 FTGLSNLTKLDISENKIVIL----LDYMFQDLYNLKSLEVGDNDLVYIS----HRAFSGLNSLEQLTLEKCNLTSIPT-- 169 (477)
T ss_dssp STTCTTCCEEECTTSCCCEE----CTTTTTTCTTCCEEEECCTTCCEEC----TTSSTTCTTCCEEEEESCCCSSCCH--
T ss_pred ccCCCCCCEEECCCCccccC----ChhHccccccCCEEECCCCccceeC----hhhccCCCCCCEEECCCCcCcccCh--
Confidence 23456666666666665543 1223344566666666666554321 1223345566666666665554433
Q ss_pred HHHHhhcCCCCCEEEccCCCCChHHHHHHHHhhhcCccccceeeccCCCCChhHHHHHHHHHHcCCCCcEEEccCCCCCc
Q 007577 322 LAKGLEGNKSLRELHLHGNSIGDEGIRALMSGLSSRKGKLAVLDIGNNSISAKGAFHVAEYIKNCKSLLWINLYMNDIGD 401 (597)
Q Consensus 322 l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~ 401 (597)
..+..+++|+.|++++|.+..... .....+++|+.|++++|..... ++..+....+|++|++++|.++.
T Consensus 170 --~~l~~l~~L~~L~l~~n~i~~~~~-----~~~~~l~~L~~L~l~~~~~~~~----~~~~~~~~~~L~~L~l~~n~l~~ 238 (477)
T 2id5_A 170 --EALSHLHGLIVLRLRHLNINAIRD-----YSFKRLYRLKVLEISHWPYLDT----MTPNCLYGLNLTSLSITHCNLTA 238 (477)
T ss_dssp --HHHTTCTTCCEEEEESCCCCEECT-----TCSCSCTTCCEEEEECCTTCCE----ECTTTTTTCCCSEEEEESSCCCS
T ss_pred --hHhcccCCCcEEeCCCCcCcEeCh-----hhcccCcccceeeCCCCccccc----cCcccccCccccEEECcCCcccc
Confidence 234455566666666655543211 1112334555555555543321 12222223355555555555543
Q ss_pred HHHHHHHHHHhcCCCccEEEccCCCCChHHHHHHHHHhhcCCCcCEEECcCCCCCHHHHHHHHHHHhhCCCcCEEecCCC
Q 007577 402 EGAEKIADALKQNRTITTIDLGGNNIHSKGASAIARVLKDNSVITSLDLAYNPIGADGAKALSEVLKFHGNINTLKLGWC 481 (597)
Q Consensus 402 ~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n 481 (597)
.. ...+..+++|++|+|++|.++.... ..+..+++|++|+|++|.++.... ..+..+++|++|++++|
T Consensus 239 ~~----~~~~~~l~~L~~L~Ls~n~l~~~~~----~~~~~l~~L~~L~L~~n~l~~~~~----~~~~~l~~L~~L~L~~N 306 (477)
T 2id5_A 239 VP----YLAVRHLVYLRFLNLSYNPISTIEG----SMLHELLRLQEIQLVGGQLAVVEP----YAFRGLNYLRVLNVSGN 306 (477)
T ss_dssp CC----HHHHTTCTTCCEEECCSSCCCEECT----TSCTTCTTCCEEECCSSCCSEECT----TTBTTCTTCCEEECCSS
T ss_pred cC----HHHhcCccccCeeECCCCcCCccCh----hhccccccCCEEECCCCccceECH----HHhcCcccCCEEECCCC
Confidence 21 1223344555555555555543221 122334555555555554443211 12233445555555555
Q ss_pred CCChhHHHHHHHHHhcCCCccEEEccCCCC
Q 007577 482 QIGASGAEFVADMLRYNNTISILDLRANGL 511 (597)
Q Consensus 482 ~i~~~~~~~l~~~l~~~~~L~~L~l~~n~i 511 (597)
+++...... +..+++|++|++++|.+
T Consensus 307 ~l~~~~~~~----~~~l~~L~~L~l~~N~l 332 (477)
T 2id5_A 307 QLTTLEESV----FHSVGNLETLILDSNPL 332 (477)
T ss_dssp CCSCCCGGG----BSCGGGCCEEECCSSCE
T ss_pred cCceeCHhH----cCCCcccCEEEccCCCc
Confidence 544332211 22234455555555543
No 38
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.91 E-value=5.5e-27 Score=255.02 Aligned_cols=367 Identities=16% Similarity=0.165 Sum_probs=239.0
Q ss_pred CCCcEEEcCCCCCCHHHHHHHHHHhccCCCccEEEeccCCCCHHHHHHHHHHhhhCCCccEEEccCCCCChhHHHHHHHH
Q 007577 162 RAFSSVDMSGRNFGDEGLFFLAESLGYNQTAEEVSFAANGITAAGIKAFDGVLQSNIALKTLNLSGNPIGDEGVKCLCDI 241 (597)
Q Consensus 162 ~~L~~L~Ls~~~l~~~~~~~l~~~l~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~ 241 (597)
+++++|++++|.+.... +..+..+++|++|++++|.++... +..+..+++|++|++++|.++... ..
T Consensus 52 ~~L~~L~Ls~N~i~~~~----~~~~~~l~~L~~L~Ls~N~l~~~~----~~~~~~l~~L~~L~Ls~N~l~~lp-----~~ 118 (562)
T 3a79_B 52 PRTKALSLSQNSISELR----MPDISFLSELRVLRLSHNRIRSLD----FHVFLFNQDLEYLDVSHNRLQNIS-----CC 118 (562)
T ss_dssp TTCCEEECCSSCCCCCC----GGGTTTCTTCCEEECCSCCCCEEC----TTTTTTCTTCCEEECTTSCCCEEC-----SC
T ss_pred CCcCEEECCCCCccccC----hhhhccCCCccEEECCCCCCCcCC----HHHhCCCCCCCEEECCCCcCCccC-----cc
Confidence 67889999998887532 346677889999999999887532 234566788999999998887532 22
Q ss_pred HhcCCCcCEEEecCCCCChHHHHHHHHHHHcCCCccEEEeccCCCChhhHHHHHHHHhhCCCc--cEEEcCCCCC--ChH
Q 007577 242 LVDNAGVERLQLSSVDLRDEGAKAIAELLKNNSILRVLELNNNMIDYSGFTSLAEALLENSTI--RSLHLNGNYG--GAL 317 (597)
Q Consensus 242 l~~~~~L~~L~Ls~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L--~~L~L~~n~i--~~~ 317 (597)
.+++|++|++++|.++... ++..+.++++|++|++++|+++... +..+++| ++|++++|.+ +..
T Consensus 119 --~l~~L~~L~Ls~N~l~~l~---~p~~~~~l~~L~~L~L~~n~l~~~~-------~~~l~~L~L~~L~L~~n~l~~~~~ 186 (562)
T 3a79_B 119 --PMASLRHLDLSFNDFDVLP---VCKEFGNLTKLTFLGLSAAKFRQLD-------LLPVAHLHLSCILLDLVSYHIKGG 186 (562)
T ss_dssp --CCTTCSEEECCSSCCSBCC---CCGGGGGCTTCCEEEEECSBCCTTT-------TGGGTTSCEEEEEEEESSCCCCSS
T ss_pred --ccccCCEEECCCCCccccC---chHhhcccCcccEEecCCCccccCc-------hhhhhhceeeEEEeeccccccccc
Confidence 4688999999999887631 2234566788999999998887532 2334445 8999988877 332
Q ss_pred HHHHHHH----------------------HhhcCCCCCEEEccCCCCChHHHHHHHHhhhcCccccceeeccCCCCChhH
Q 007577 318 GANALAK----------------------GLEGNKSLRELHLHGNSIGDEGIRALMSGLSSRKGKLAVLDIGNNSISAKG 375 (597)
Q Consensus 318 ~~~~l~~----------------------~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~ 375 (597)
....+.. .+..+++|+.|++++|...-..+......+. ..++|+.|++.++.++...
T Consensus 187 ~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~l~-~l~~L~~L~L~~~~l~~~~ 265 (562)
T 3a79_B 187 ETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELT-RGPTLLNVTLQHIETTWKC 265 (562)
T ss_dssp SCCEEEECCEEEEEEEECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHHHHHH-SCSSCEEEEEEEEEECHHH
T ss_pred CcccccccCcceEEEEecCccchhhhhhhcccccceEEEecccccccccchHHHHHHHHh-ccCcceEEEecCCcCcHHH
Confidence 2111100 0113446777777777544333333333333 4457888999888888876
Q ss_pred HHHHHHHHHcCCCCcEEEccCCCCCcHH---H-------------------------HHHHHHH----------------
Q 007577 376 AFHVAEYIKNCKSLLWINLYMNDIGDEG---A-------------------------EKIADAL---------------- 411 (597)
Q Consensus 376 ~~~l~~~l~~~~~L~~L~Ls~n~l~~~~---~-------------------------~~l~~~l---------------- 411 (597)
...++..+. .++|++|++++|.+++.. + ..+...+
T Consensus 266 ~~~~~~~~~-~~~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~~~p~~~~~~~~~~~~L~~L~l~~n~~~ 344 (562)
T 3a79_B 266 SVKLFQFFW-PRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTPFI 344 (562)
T ss_dssp HHHHHHHHT-TSSEEEEEEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCCSSCHHHHHHHHHTCCCSEEEEESSCCC
T ss_pred HHHHHHhhh-cccccEEEEeccEeeccccchhhhcccccchheehhhcccceeecChhhhhhhhccCcceEEEccCCCcc
Confidence 666665543 458999999998766310 0 1121111
Q ss_pred -----hcCCCccEEEccCCCCChHHHHHHHHHhhcCCCcCEEECcCCCCCHHHHHHHHHHHhhCCCcCEEecCCCCCChh
Q 007577 412 -----KQNRTITTIDLGGNNIHSKGASAIARVLKDNSVITSLDLAYNPIGADGAKALSEVLKFHGNINTLKLGWCQIGAS 486 (597)
Q Consensus 412 -----~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~ 486 (597)
..+++|++|++++|.+++. +...+..+++|++|++++|.++.. ..+...+..+++|++|++++|.++..
T Consensus 345 ~~~~~~~l~~L~~L~l~~n~l~~~----~~~~~~~l~~L~~L~L~~N~l~~~--~~~~~~~~~l~~L~~L~l~~N~l~~~ 418 (562)
T 3a79_B 345 HMVCPPSPSSFTFLNFTQNVFTDS----VFQGCSTLKRLQTLILQRNGLKNF--FKVALMTKNMSSLETLDVSLNSLNSH 418 (562)
T ss_dssp CCCCCSSCCCCCEEECCSSCCCTT----TTTTCCSCSSCCEEECCSSCCCBT--THHHHTTTTCTTCCEEECTTSCCBSC
T ss_pred cccCccCCCCceEEECCCCccccc----hhhhhcccCCCCEEECCCCCcCCc--ccchhhhcCCCCCCEEECCCCcCCCc
Confidence 4567788888888888763 233456668888888888887642 22334456678888888888887652
Q ss_pred HHHHHHHHHhcCCCccEEEccCCCCChHHHHHHHHHHhhcCccccEEEccCCCCChHHHHHHHHHHHhCCCCceeEEEcc
Q 007577 487 GAEFVADMLRYNNTISILDLRANGLRDEGAKCLAQSFKVVNEALTSIDLAFNEIRDDGAFAIAQALKANEDVAVTSLNLA 566 (597)
Q Consensus 487 ~~~~l~~~l~~~~~L~~L~l~~n~i~~~~~~~l~~~l~~~n~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~ 566 (597)
.+. ..+..+++|++|++++|.+++..+..+ .++|++|++++|+++.. +..+.. . .+|+.|+|+
T Consensus 419 ~~~---~~~~~l~~L~~L~l~~n~l~~~~~~~l-------~~~L~~L~L~~N~l~~i-p~~~~~----l--~~L~~L~L~ 481 (562)
T 3a79_B 419 AYD---RTCAWAESILVLNLSSNMLTGSVFRCL-------PPKVKVLDLHNNRIMSI-PKDVTH----L--QALQELNVA 481 (562)
T ss_dssp CSS---CCCCCCTTCCEEECCSSCCCGGGGSSC-------CTTCSEEECCSSCCCCC-CTTTTS----S--CCCSEEECC
T ss_pred cCh---hhhcCcccCCEEECCCCCCCcchhhhh-------cCcCCEEECCCCcCccc-ChhhcC----C--CCCCEEECC
Confidence 111 123445788888888888875432211 14699999999988832 222221 2 359999999
Q ss_pred cCccchhhHHHH
Q 007577 567 NNFLTKFGQSAL 578 (597)
Q Consensus 567 ~N~i~~~~~~~l 578 (597)
+|+|+.+....+
T Consensus 482 ~N~l~~l~~~~~ 493 (562)
T 3a79_B 482 SNQLKSVPDGVF 493 (562)
T ss_dssp SSCCCCCCTTST
T ss_pred CCCCCCCCHHHH
Confidence 999987665533
No 39
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.91 E-value=2.9e-27 Score=269.02 Aligned_cols=310 Identities=16% Similarity=0.122 Sum_probs=154.3
Q ss_pred HhcCCCcEEEcCCCCCCHHHHHHH-HHHhccCCCccEEEeccCCCCHHHHHHHHHHhhhCCCccEEEccCCCCChhHHHH
Q 007577 159 KELRAFSSVDMSGRNFGDEGLFFL-AESLGYNQTAEEVSFAANGITAAGIKAFDGVLQSNIALKTLNLSGNPIGDEGVKC 237 (597)
Q Consensus 159 ~~~~~L~~L~Ls~~~l~~~~~~~l-~~~l~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~ 237 (597)
..+++|++|+|++|..... + +..+..+++|+.|+|++|.++.. .+..+..+++|++|+|++|.+.+.....
T Consensus 45 ~~l~~L~~LdLs~n~~~~~----i~~~~f~~L~~L~~L~Ls~N~l~~~----~p~~~~~l~~L~~L~Ls~n~l~~~~~~~ 116 (844)
T 3j0a_A 45 PFLEQLQLLELGSQYTPLT----IDKEAFRNLPNLRILDLGSSKIYFL----HPDAFQGLFHLFELRLYFCGLSDAVLKD 116 (844)
T ss_dssp SSCCSCSEEEECTTCCCCE----ECTTTTSSCTTCCEEECTTCCCCEE----CTTSSCSCSSCCCEECTTCCCSSCCSTT
T ss_pred cccccCeEEeCCCCCCccc----cCHHHhcCCCCCCEEECCCCcCccc----CHhHccCCcccCEeeCcCCCCCcccccC
Confidence 3455566666665532110 1 23345556666666666655432 1233445556666666666554321000
Q ss_pred HHHHHhcCCCcCEEEecCCCCChHHHHHHHHHHHcCCCccEEEeccCCCChhhHHHHHHHHhhCCCccEEEcCCCCCChH
Q 007577 238 LCDILVDNAGVERLQLSSVDLRDEGAKAIAELLKNNSILRVLELNNNMIDYSGFTSLAEALLENSTIRSLHLNGNYGGAL 317 (597)
Q Consensus 238 l~~~l~~~~~L~~L~Ls~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~ 317 (597)
..+..+++|++|++++|.++... .+..+.++++|++|++++|.++......+... . .++|+.|++++|.+...
T Consensus 117 --~~~~~L~~L~~L~Ls~N~l~~~~---~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l-~-~~~L~~L~L~~n~l~~~ 189 (844)
T 3j0a_A 117 --GYFRNLKALTRLDLSKNQIRSLY---LHPSFGKLNSLKSIDFSSNQIFLVCEHELEPL-Q-GKTLSFFSLAANSLYSR 189 (844)
T ss_dssp --CCCSSCSSCCEEEEESCCCCCCC---CCGGGGTCSSCCEEEEESSCCCCCCSGGGHHH-H-HCSSCCCEECCSBSCCC
T ss_pred --ccccccCCCCEEECCCCcccccc---cchhHhhCCCCCEEECCCCcCCeeCHHHcccc-c-CCccceEECCCCccccc
Confidence 11334566666666666554421 11234445666666666665543211111110 0 04445555544443321
Q ss_pred HHHHHHHHhhcCC------CCCEEEccCCCCChHHHHHHHHhhh-------------------------------c--Cc
Q 007577 318 GANALAKGLEGNK------SLRELHLHGNSIGDEGIRALMSGLS-------------------------------S--RK 358 (597)
Q Consensus 318 ~~~~l~~~l~~~~------~L~~L~Ls~n~i~~~~~~~l~~~l~-------------------------------~--~~ 358 (597)
.. ..+..++ .|+.|++++|.++......+...+. . ..
T Consensus 190 ~~----~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~f~~l~~ 265 (844)
T 3j0a_A 190 VS----VDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLAR 265 (844)
T ss_dssp CC----CCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSSSTTGGGTTTTTTTT
T ss_pred cc----cchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceecccccccccccccccCCCChhhhhcccc
Confidence 11 0111122 2677777776554332221111100 0 01
Q ss_pred cccceeeccCCCCChhHHHHHHHHHHcCCCCcEEEccCCCCCcHHHHHHHHHHhcCCCccEEEccCCCCChHHHHHHHHH
Q 007577 359 GKLAVLDIGNNSISAKGAFHVAEYIKNCKSLLWINLYMNDIGDEGAEKIADALKQNRTITTIDLGGNNIHSKGASAIARV 438 (597)
Q Consensus 359 ~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~ 438 (597)
++|+.|++++|.+... .+..+..+++|+.|+|++|.++.. .+..+..+++|++|+|++|.++... ...
T Consensus 266 ~~L~~L~Ls~n~l~~~----~~~~~~~l~~L~~L~L~~n~i~~~----~~~~~~~l~~L~~L~Ls~N~l~~~~----~~~ 333 (844)
T 3j0a_A 266 SSVRHLDLSHGFVFSL----NSRVFETLKDLKVLNLAYNKINKI----ADEAFYGLDNLQVLNLSYNLLGELY----SSN 333 (844)
T ss_dssp SCCCEEECTTCCCCEE----CSCCSSSCCCCCEEEEESCCCCEE----CTTTTTTCSSCCEEEEESCCCSCCC----SCS
T ss_pred CCccEEECCCCccccc----ChhhhhcCCCCCEEECCCCcCCCC----ChHHhcCCCCCCEEECCCCCCCccC----HHH
Confidence 3577777777766652 234455667777777777777653 2234555677777777777765431 223
Q ss_pred hhcCCCcCEEECcCCCCCHHHHHHHHHHHhhCCCcCEEecCCCCCChhHHHHHHHHHhcCCCccEEEccCCCCC
Q 007577 439 LKDNSVITSLDLAYNPIGADGAKALSEVLKFHGNINTLKLGWCQIGASGAEFVADMLRYNNTISILDLRANGLR 512 (597)
Q Consensus 439 l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~n~i~ 512 (597)
+..+++|++|++++|.++.... ..+..+++|++|++++|.++... .+++|+.|++++|.++
T Consensus 334 ~~~l~~L~~L~L~~N~i~~~~~----~~~~~l~~L~~L~Ls~N~l~~i~---------~~~~L~~L~l~~N~l~ 394 (844)
T 3j0a_A 334 FYGLPKVAYIDLQKNHIAIIQD----QTFKFLEKLQTLDLRDNALTTIH---------FIPSIPDIFLSGNKLV 394 (844)
T ss_dssp CSSCTTCCEEECCSCCCCCCCS----SCSCSCCCCCEEEEETCCSCCCS---------SCCSCSEEEEESCCCC
T ss_pred hcCCCCCCEEECCCCCCCccCh----hhhcCCCCCCEEECCCCCCCccc---------CCCCcchhccCCCCcc
Confidence 4455777777777776654321 12344567777777777765431 1355666666665554
No 40
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.91 E-value=5.2e-26 Score=248.86 Aligned_cols=314 Identities=16% Similarity=0.105 Sum_probs=180.1
Q ss_pred cCCCcEEEcCCCCCCHHHHHHHHHHhccCCCccEEEeccCCCCHHHHHHHHHHhhhCCCccEEEccCCCCChhHHHHHHH
Q 007577 161 LRAFSSVDMSGRNFGDEGLFFLAESLGYNQTAEEVSFAANGITAAGIKAFDGVLQSNIALKTLNLSGNPIGDEGVKCLCD 240 (597)
Q Consensus 161 ~~~L~~L~Ls~~~l~~~~~~~l~~~l~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~ 240 (597)
+.+++.++++++.++... ...+..+++|+.|++++|.++.... ..+..+++|++|+|++|.++... +.
T Consensus 50 l~~l~~l~l~~~~l~~lp----~~~~~~l~~L~~L~L~~n~l~~~~~----~~~~~l~~L~~L~L~~n~l~~~~----~~ 117 (597)
T 3oja_B 50 LNNQKIVTFKNSTMRKLP----AALLDSFRQVELLNLNDLQIEEIDT----YAFAYAHTIQKLYMGFNAIRYLP----PH 117 (597)
T ss_dssp GCCCSEEEESSCEESEEC----THHHHHCCCCSEEECTTSCCCEECT----TTTTTCTTCCEEECCSSCCCCCC----TT
T ss_pred CCCceEEEeeCCCCCCcC----HHHHccCCCCcEEECCCCCCCCCCh----HHhcCCCCCCEEECCCCcCCCCC----HH
Confidence 456677777776655432 1233445677777777776654321 23445666777777777666542 22
Q ss_pred HHhcCCCcCEEEecCCCCChHHHHHHHHHHHcCCCccEEEeccCCCChhhHHHHHHHHhhCCCccEEEcCCCCCChHHHH
Q 007577 241 ILVDNAGVERLQLSSVDLRDEGAKAIAELLKNNSILRVLELNNNMIDYSGFTSLAEALLENSTIRSLHLNGNYGGALGAN 320 (597)
Q Consensus 241 ~l~~~~~L~~L~Ls~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~ 320 (597)
.+..+++|++|+|++|.++... ...+..+++|++|++++|.++... +..+..+++|++|++++|.++..+
T Consensus 118 ~~~~l~~L~~L~L~~n~l~~l~----~~~~~~l~~L~~L~Ls~N~l~~~~----~~~~~~l~~L~~L~L~~N~l~~~~-- 187 (597)
T 3oja_B 118 VFQNVPLLTVLVLERNDLSSLP----RGIFHNTPKLTTLSMSNNNLERIE----DDTFQATTSLQNLQLSSNRLTHVD-- 187 (597)
T ss_dssp TTTTCTTCCEEECCSSCCCCCC----TTTTTTCTTCCEEECCSSCCCBCC----TTTTTTCTTCCEEECTTSCCSBCC--
T ss_pred HHcCCCCCCEEEeeCCCCCCCC----HHHhccCCCCCEEEeeCCcCCCCC----hhhhhcCCcCcEEECcCCCCCCcC--
Confidence 3344577777777777666431 122345567777777777665321 233455667777777777666542
Q ss_pred HHHHHhhcCCCCCEEEccCCCCChHHHHHHHHhhhcCccccceeeccCCCCChhHHHHHHHHHHcCCCCcEEEccCCCCC
Q 007577 321 ALAKGLEGNKSLRELHLHGNSIGDEGIRALMSGLSSRKGKLAVLDIGNNSISAKGAFHVAEYIKNCKSLLWINLYMNDIG 400 (597)
Q Consensus 321 ~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~ 400 (597)
+..+++|+.|++++|.++.. .....|+.|++++|.++.. +. ...++|+.|+|++|.++
T Consensus 188 -----~~~l~~L~~L~l~~n~l~~l----------~~~~~L~~L~ls~n~l~~~-----~~--~~~~~L~~L~L~~n~l~ 245 (597)
T 3oja_B 188 -----LSLIPSLFHANVSYNLLSTL----------AIPIAVEELDASHNSINVV-----RG--PVNVELTILKLQHNNLT 245 (597)
T ss_dssp -----GGGCTTCSEEECCSSCCSEE----------ECCTTCSEEECCSSCCCEE-----EC--SCCSCCCEEECCSSCCC
T ss_pred -----hhhhhhhhhhhcccCccccc----------cCCchhheeeccCCccccc-----cc--ccCCCCCEEECCCCCCC
Confidence 33566677777777766542 1223577777777766552 11 11356777777777666
Q ss_pred cHHHHHHHHHHhcCCCccEEEccCCCCChHHHHHHHHHhhcCCCcCEEECcCCCCCHHHHHHHHHHHhhCCCcCEEecCC
Q 007577 401 DEGAEKIADALKQNRTITTIDLGGNNIHSKGASAIARVLKDNSVITSLDLAYNPIGADGAKALSEVLKFHGNINTLKLGW 480 (597)
Q Consensus 401 ~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~L~~ 480 (597)
+. ..+..+++|++|+|++|.++... +..+..+++|++|+|++|.++.. ......+++|++|+|++
T Consensus 246 ~~------~~l~~l~~L~~L~Ls~N~l~~~~----~~~~~~l~~L~~L~Ls~N~l~~l-----~~~~~~l~~L~~L~Ls~ 310 (597)
T 3oja_B 246 DT------AWLLNYPGLVEVDLSYNELEKIM----YHPFVKMQRLERLYISNNRLVAL-----NLYGQPIPTLKVLDLSH 310 (597)
T ss_dssp CC------GGGGGCTTCSEEECCSSCCCEEE----SGGGTTCSSCCEEECTTSCCCEE-----ECSSSCCTTCCEEECCS
T ss_pred CC------hhhccCCCCCEEECCCCccCCCC----HHHhcCccCCCEEECCCCCCCCC-----CcccccCCCCcEEECCC
Confidence 52 33555667777777777766542 22344556777777777766542 12223356777777777
Q ss_pred CCCChhHHHHHHHHHhcCCCccEEEccCCCCChHHHHHHHHHHhhcCccccEEEccCCCCChHHHH
Q 007577 481 CQIGASGAEFVADMLRYNNTISILDLRANGLRDEGAKCLAQSFKVVNEALTSIDLAFNEIRDDGAF 546 (597)
Q Consensus 481 n~i~~~~~~~l~~~l~~~~~L~~L~l~~n~i~~~~~~~l~~~l~~~n~~L~~L~Ls~n~i~~~~~~ 546 (597)
|.++.... .+ ..+++|+.|++++|.++... +.. .++|+.|++++|.+......
T Consensus 311 N~l~~i~~-~~----~~l~~L~~L~L~~N~l~~~~---~~~-----~~~L~~L~l~~N~~~~~~~~ 363 (597)
T 3oja_B 311 NHLLHVER-NQ----PQFDRLENLYLDHNSIVTLK---LST-----HHTLKNLTLSHNDWDCNSLR 363 (597)
T ss_dssp SCCCCCGG-GH----HHHTTCSEEECCSSCCCCCC---CCT-----TCCCSEEECCSSCEEHHHHH
T ss_pred CCCCccCc-cc----ccCCCCCEEECCCCCCCCcC---hhh-----cCCCCEEEeeCCCCCChhHH
Confidence 77664321 12 22367777777777666542 111 15677777777776655433
No 41
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.91 E-value=7.8e-29 Score=281.97 Aligned_cols=246 Identities=20% Similarity=0.196 Sum_probs=125.4
Q ss_pred HHhcCCCcEEEcCCCCCCHHHHHHHHHHhccCCCccEEEeccCCCCHHHHHHHHHHhhhCCCccEEEccCCCCChhHHHH
Q 007577 158 AKELRAFSSVDMSGRNFGDEGLFFLAESLGYNQTAEEVSFAANGITAAGIKAFDGVLQSNIALKTLNLSGNPIGDEGVKC 237 (597)
Q Consensus 158 ~~~~~~L~~L~Ls~~~l~~~~~~~l~~~l~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~ 237 (597)
+..+++|++|+|++|.+... .+..+..+++|++|++++|.++..... ...+..+++|++|++++|.+....
T Consensus 69 f~~L~~L~~L~Ls~N~l~~~----~p~~~~~l~~L~~L~Ls~n~l~~~~~~--~~~~~~L~~L~~L~Ls~N~l~~~~--- 139 (844)
T 3j0a_A 69 FRNLPNLRILDLGSSKIYFL----HPDAFQGLFHLFELRLYFCGLSDAVLK--DGYFRNLKALTRLDLSKNQIRSLY--- 139 (844)
T ss_dssp TSSCTTCCEEECTTCCCCEE----CTTSSCSCSSCCCEECTTCCCSSCCST--TCCCSSCSSCCEEEEESCCCCCCC---
T ss_pred hcCCCCCCEEECCCCcCccc----CHhHccCCcccCEeeCcCCCCCccccc--CccccccCCCCEEECCCCcccccc---
Confidence 34567777777777776643 244566677777777777776532111 012445667777777777765432
Q ss_pred HHHHHhcCCCcCEEEecCCCCChHHHHHHHHHHH----------------------cCC------CccEEEeccCCCChh
Q 007577 238 LCDILVDNAGVERLQLSSVDLRDEGAKAIAELLK----------------------NNS------ILRVLELNNNMIDYS 289 (597)
Q Consensus 238 l~~~l~~~~~L~~L~Ls~~~l~~~~~~~l~~~l~----------------------~~~------~L~~L~Ls~n~i~~~ 289 (597)
....+..+++|++|++++|.++......+..... .+. .|++|++++|.++..
T Consensus 140 ~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~ 219 (844)
T 3j0a_A 140 LHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVD 219 (844)
T ss_dssp CCGGGGTCSSCCEEEEESSCCCCCCSGGGHHHHHCSSCCCEECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTT
T ss_pred cchhHhhCCCCCEEECCCCcCCeeCHHHcccccCCccceEECCCCccccccccchhhcCCccccCceeEEecCCCcCchh
Confidence 1123445677777777777665432222332210 011 255555555544332
Q ss_pred hHHHHHHH--------------------------------Hhh--CCCccEEEcCCCCCChHHHHHHHHHhhcCCCCCEE
Q 007577 290 GFTSLAEA--------------------------------LLE--NSTIRSLHLNGNYGGALGANALAKGLEGNKSLREL 335 (597)
Q Consensus 290 ~~~~l~~~--------------------------------l~~--~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L 335 (597)
....+... +.. .++|++|++++|.+..... ..+..+++|+.|
T Consensus 220 ~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~----~~~~~l~~L~~L 295 (844)
T 3j0a_A 220 ITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNS----RVFETLKDLKVL 295 (844)
T ss_dssp TTSGGGGTSCSCCBSEEECCSSCCBCSSSCSSSTTGGGTTTTTTTTSCCCEEECTTCCCCEECS----CCSSSCCCCCEE
T ss_pred HHHHHHhhcCcccccceecccccccccccccccCCCChhhhhccccCCccEEECCCCcccccCh----hhhhcCCCCCEE
Confidence 21111111 000 1456666666665544322 234455666666
Q ss_pred EccCCCCChHHHHHHHHhhhcCccccceeeccCCCCChhHHHHHHHHHHcCCCCcEEEccCCCCCcHHHHHHHHHHhcCC
Q 007577 336 HLHGNSIGDEGIRALMSGLSSRKGKLAVLDIGNNSISAKGAFHVAEYIKNCKSLLWINLYMNDIGDEGAEKIADALKQNR 415 (597)
Q Consensus 336 ~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~ 415 (597)
++++|.++...... ...+++|+.|++++|.++.. .+..+..+++|++|++++|.++... ...+..++
T Consensus 296 ~L~~n~i~~~~~~~-----~~~l~~L~~L~Ls~N~l~~~----~~~~~~~l~~L~~L~L~~N~i~~~~----~~~~~~l~ 362 (844)
T 3j0a_A 296 NLAYNKINKIADEA-----FYGLDNLQVLNLSYNLLGEL----YSSNFYGLPKVAYIDLQKNHIAIIQ----DQTFKFLE 362 (844)
T ss_dssp EEESCCCCEECTTT-----TTTCSSCCEEEEESCCCSCC----CSCSCSSCTTCCEEECCSCCCCCCC----SSCSCSCC
T ss_pred ECCCCcCCCCChHH-----hcCCCCCCEEECCCCCCCcc----CHHHhcCCCCCCEEECCCCCCCccC----hhhhcCCC
Confidence 66666655421111 12344666666666665541 2334455566666666666554421 11234455
Q ss_pred CccEEEccCCCCCh
Q 007577 416 TITTIDLGGNNIHS 429 (597)
Q Consensus 416 ~L~~L~L~~n~l~~ 429 (597)
+|++|+|++|.++.
T Consensus 363 ~L~~L~Ls~N~l~~ 376 (844)
T 3j0a_A 363 KLQTLDLRDNALTT 376 (844)
T ss_dssp CCCEEEEETCCSCC
T ss_pred CCCEEECCCCCCCc
Confidence 66666666665543
No 42
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.91 E-value=3.4e-27 Score=251.54 Aligned_cols=321 Identities=18% Similarity=0.144 Sum_probs=236.7
Q ss_pred cEEEcCCCCCCHHHHHHHHHHhccCCCccEEEeccCCCCHHHHHHHHHHhhhCCCccEEEccCCCCChhHHHHHHHHHhc
Q 007577 165 SSVDMSGRNFGDEGLFFLAESLGYNQTAEEVSFAANGITAAGIKAFDGVLQSNIALKTLNLSGNPIGDEGVKCLCDILVD 244 (597)
Q Consensus 165 ~~L~Ls~~~l~~~~~~~l~~~l~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~ 244 (597)
+.++.+++.+... +..+ .++++.|++++|.++... ...+..+++|++|+|++|.++... +..+..
T Consensus 14 ~~v~c~~~~l~~i-----p~~~--~~~l~~L~L~~n~l~~~~----~~~~~~l~~L~~L~L~~n~i~~~~----~~~~~~ 78 (477)
T 2id5_A 14 RAVLCHRKRFVAV-----PEGI--PTETRLLDLGKNRIKTLN----QDEFASFPHLEELELNENIVSAVE----PGAFNN 78 (477)
T ss_dssp TEEECCSCCCSSC-----CSCC--CTTCSEEECCSSCCCEEC----TTTTTTCTTCCEEECTTSCCCEEC----TTTTTT
T ss_pred CEEEeCCCCcCcC-----CCCC--CCCCcEEECCCCccceEC----HhHccCCCCCCEEECCCCccCEeC----hhhhhC
Confidence 3566666665532 2222 368999999999987643 234567899999999999998753 334556
Q ss_pred CCCcCEEEecCCCCChHHHHHHHHHHHcCCCccEEEeccCCCChhhHHHHHHHHhhCCCccEEEcCCCCCChHHHHHHHH
Q 007577 245 NAGVERLQLSSVDLRDEGAKAIAELLKNNSILRVLELNNNMIDYSGFTSLAEALLENSTIRSLHLNGNYGGALGANALAK 324 (597)
Q Consensus 245 ~~~L~~L~Ls~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~ 324 (597)
+++|++|+|++|.++.... ..+..+++|++|++++|+++... +..+..+++|++|++++|.+..... .
T Consensus 79 l~~L~~L~L~~n~l~~~~~----~~~~~l~~L~~L~Ls~n~i~~~~----~~~~~~l~~L~~L~l~~n~l~~~~~----~ 146 (477)
T 2id5_A 79 LFNLRTLGLRSNRLKLIPL----GVFTGLSNLTKLDISENKIVILL----DYMFQDLYNLKSLEVGDNDLVYISH----R 146 (477)
T ss_dssp CTTCCEEECCSSCCCSCCT----TSSTTCTTCCEEECTTSCCCEEC----TTTTTTCTTCCEEEECCTTCCEECT----T
T ss_pred CccCCEEECCCCcCCccCc----ccccCCCCCCEEECCCCccccCC----hhHccccccCCEEECCCCccceeCh----h
Confidence 7999999999999886422 23456799999999999986432 3445678999999999998876544 3
Q ss_pred HhhcCCCCCEEEccCCCCChHHHHHHHHhhhcCccccceeeccCCCCChhHHHHHHHHHHcCCCCcEEEccCCCCCcHHH
Q 007577 325 GLEGNKSLRELHLHGNSIGDEGIRALMSGLSSRKGKLAVLDIGNNSISAKGAFHVAEYIKNCKSLLWINLYMNDIGDEGA 404 (597)
Q Consensus 325 ~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~ 404 (597)
.+.++++|++|++++|.++......+ ..+++|+.|++++|.+... ....+..+++|++|++++|.+.+.
T Consensus 147 ~~~~l~~L~~L~l~~n~l~~~~~~~l-----~~l~~L~~L~l~~n~i~~~----~~~~~~~l~~L~~L~l~~~~~~~~-- 215 (477)
T 2id5_A 147 AFSGLNSLEQLTLEKCNLTSIPTEAL-----SHLHGLIVLRLRHLNINAI----RDYSFKRLYRLKVLEISHWPYLDT-- 215 (477)
T ss_dssp SSTTCTTCCEEEEESCCCSSCCHHHH-----TTCTTCCEEEEESCCCCEE----CTTCSCSCTTCCEEEEECCTTCCE--
T ss_pred hccCCCCCCEEECCCCcCcccChhHh-----cccCCCcEEeCCCCcCcEe----ChhhcccCcccceeeCCCCccccc--
Confidence 46788999999999999876433333 4566899999999988873 234567789999999999865443
Q ss_pred HHHHHHHhcCCCccEEEccCCCCChHHHHHHHHHhhcCCCcCEEECcCCCCCHHHHHHHHHHHhhCCCcCEEecCCCCCC
Q 007577 405 EKIADALKQNRTITTIDLGGNNIHSKGASAIARVLKDNSVITSLDLAYNPIGADGAKALSEVLKFHGNINTLKLGWCQIG 484 (597)
Q Consensus 405 ~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~i~ 484 (597)
++.......+|++|++++|.++.... ..+..+++|++|+|++|.++.... ..+..+++|++|++++|+++
T Consensus 216 --~~~~~~~~~~L~~L~l~~n~l~~~~~----~~~~~l~~L~~L~Ls~n~l~~~~~----~~~~~l~~L~~L~L~~n~l~ 285 (477)
T 2id5_A 216 --MTPNCLYGLNLTSLSITHCNLTAVPY----LAVRHLVYLRFLNLSYNPISTIEG----SMLHELLRLQEIQLVGGQLA 285 (477)
T ss_dssp --ECTTTTTTCCCSEEEEESSCCCSCCH----HHHTTCTTCCEEECCSSCCCEECT----TSCTTCTTCCEEECCSSCCS
T ss_pred --cCcccccCccccEEECcCCcccccCH----HHhcCccccCeeECCCCcCCccCh----hhccccccCCEEECCCCccc
Confidence 22223334689999999999986533 335667999999999998876432 23456789999999999988
Q ss_pred hhHHHHHHHHHhcCCCccEEEccCCCCChHHHHHHHHHHhhcCccccEEEccCCCCCh
Q 007577 485 ASGAEFVADMLRYNNTISILDLRANGLRDEGAKCLAQSFKVVNEALTSIDLAFNEIRD 542 (597)
Q Consensus 485 ~~~~~~l~~~l~~~~~L~~L~l~~n~i~~~~~~~l~~~l~~~n~~L~~L~Ls~n~i~~ 542 (597)
...+. .+..+++|+.|++++|.++......+..+ ++|++|++++|.+..
T Consensus 286 ~~~~~----~~~~l~~L~~L~L~~N~l~~~~~~~~~~l-----~~L~~L~l~~N~l~c 334 (477)
T 2id5_A 286 VVEPY----AFRGLNYLRVLNVSGNQLTTLEESVFHSV-----GNLETLILDSNPLAC 334 (477)
T ss_dssp EECTT----TBTTCTTCCEEECCSSCCSCCCGGGBSCG-----GGCCEEECCSSCEEC
T ss_pred eECHH----HhcCcccCCEEECCCCcCceeCHhHcCCC-----cccCEEEccCCCccC
Confidence 76443 34566999999999998887544433333 679999999998763
No 43
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.90 E-value=1e-24 Score=229.91 Aligned_cols=302 Identities=17% Similarity=0.145 Sum_probs=223.6
Q ss_pred HhcCCCcEEEcCCCCCCHHHHHHHHHHhccCCCccEEEeccCCCCHHHHHHHHHHhhhCCCccEEEccCCCCChhHHHHH
Q 007577 159 KELRAFSSVDMSGRNFGDEGLFFLAESLGYNQTAEEVSFAANGITAAGIKAFDGVLQSNIALKTLNLSGNPIGDEGVKCL 238 (597)
Q Consensus 159 ~~~~~L~~L~Ls~~~l~~~~~~~l~~~l~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l 238 (597)
..+++|++|++++|.+.+. + .+..+++|+.|++++|.++... +..+++|++|++++|.++...
T Consensus 39 ~~l~~L~~L~Ls~n~l~~~-----~-~l~~l~~L~~L~Ls~n~l~~~~-------~~~l~~L~~L~Ls~N~l~~~~---- 101 (457)
T 3bz5_A 39 EQLATLTSLDCHNSSITDM-----T-GIEKLTGLTKLICTSNNITTLD-------LSQNTNLTYLACDSNKLTNLD---- 101 (457)
T ss_dssp HHHTTCCEEECCSSCCCCC-----T-TGGGCTTCSEEECCSSCCSCCC-------CTTCTTCSEEECCSSCCSCCC----
T ss_pred hHcCCCCEEEccCCCcccC-----h-hhcccCCCCEEEccCCcCCeEc-------cccCCCCCEEECcCCCCceee----
Confidence 3578999999999998863 2 5778899999999999988641 567889999999999998742
Q ss_pred HHHHhcCCCcCEEEecCCCCChHHHHHHHHHHHcCCCccEEEeccCCCChhhHHHHHHHHhhCCCccEEEcCCC-CCChH
Q 007577 239 CDILVDNAGVERLQLSSVDLRDEGAKAIAELLKNNSILRVLELNNNMIDYSGFTSLAEALLENSTIRSLHLNGN-YGGAL 317 (597)
Q Consensus 239 ~~~l~~~~~L~~L~Ls~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n-~i~~~ 317 (597)
+..+++|++|++++|.++... +..+++|++|++++|++++. .+..+++|++|++++| .++..
T Consensus 102 ---~~~l~~L~~L~L~~N~l~~l~-------~~~l~~L~~L~l~~N~l~~l-------~l~~l~~L~~L~l~~n~~~~~~ 164 (457)
T 3bz5_A 102 ---VTPLTKLTYLNCDTNKLTKLD-------VSQNPLLTYLNCARNTLTEI-------DVSHNTQLTELDCHLNKKITKL 164 (457)
T ss_dssp ---CTTCTTCCEEECCSSCCSCCC-------CTTCTTCCEEECTTSCCSCC-------CCTTCTTCCEEECTTCSCCCCC
T ss_pred ---cCCCCcCCEEECCCCcCCeec-------CCCCCcCCEEECCCCcccee-------ccccCCcCCEEECCCCCccccc
Confidence 556899999999999998741 56779999999999999763 1567899999999999 45443
Q ss_pred HHHHHHHHhhcCCCCCEEEccCCCCChHHHHHHHHhhhcCccccceeeccCCCCChhHHHHHHHHHHcCCCCcEEEccCC
Q 007577 318 GANALAKGLEGNKSLRELHLHGNSIGDEGIRALMSGLSSRKGKLAVLDIGNNSISAKGAFHVAEYIKNCKSLLWINLYMN 397 (597)
Q Consensus 318 ~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n 397 (597)
.+..+++|++|++++|.++... ...+++|+.|++++|.++.. .+..+++|++|++++|
T Consensus 165 -------~~~~l~~L~~L~ls~n~l~~l~--------l~~l~~L~~L~l~~N~l~~~-------~l~~l~~L~~L~Ls~N 222 (457)
T 3bz5_A 165 -------DVTPQTQLTTLDCSFNKITELD--------VSQNKLLNRLNCDTNNITKL-------DLNQNIQLTFLDCSSN 222 (457)
T ss_dssp -------CCTTCTTCCEEECCSSCCCCCC--------CTTCTTCCEEECCSSCCSCC-------CCTTCTTCSEEECCSS
T ss_pred -------ccccCCcCCEEECCCCccceec--------cccCCCCCEEECcCCcCCee-------ccccCCCCCEEECcCC
Confidence 2567899999999999988732 14556899999999999883 2678899999999999
Q ss_pred CCCcHHHHHHHHHHhcCCCccEEEccCCCCChHHHHHHHHHhhcCCCcCEEECcCCCCCHHHHH------HHHHHHhhCC
Q 007577 398 DIGDEGAEKIADALKQNRTITTIDLGGNNIHSKGASAIARVLKDNSVITSLDLAYNPIGADGAK------ALSEVLKFHG 471 (597)
Q Consensus 398 ~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~------~l~~~l~~~~ 471 (597)
.+++. + +..+++|++|++++|.++... +..+++|+.|++++|.+....+. .+. ...++
T Consensus 223 ~l~~i-----p--~~~l~~L~~L~l~~N~l~~~~-------~~~l~~L~~L~l~~n~L~~L~l~~n~~~~~~~--~~~l~ 286 (457)
T 3bz5_A 223 KLTEI-----D--VTPLTQLTYFDCSVNPLTELD-------VSTLSKLTTLHCIQTDLLEIDLTHNTQLIYFQ--AEGCR 286 (457)
T ss_dssp CCSCC-----C--CTTCTTCSEEECCSSCCSCCC-------CTTCTTCCEEECTTCCCSCCCCTTCTTCCEEE--CTTCT
T ss_pred ccccc-----C--ccccCCCCEEEeeCCcCCCcC-------HHHCCCCCEEeccCCCCCEEECCCCccCCccc--ccccc
Confidence 99872 2 667899999999999998742 34456666666655543221100 000 23467
Q ss_pred CcCEEecCCCCCChhHH------HHHHHHHhcCCCccEEEccCCCCChHHHHHHHHHHhhcCccccEEEccCCCCCh
Q 007577 472 NINTLKLGWCQIGASGA------EFVADMLRYNNTISILDLRANGLRDEGAKCLAQSFKVVNEALTSIDLAFNEIRD 542 (597)
Q Consensus 472 ~L~~L~L~~n~i~~~~~------~~l~~~l~~~~~L~~L~l~~n~i~~~~~~~l~~~l~~~n~~L~~L~Ls~n~i~~ 542 (597)
+|+.|++++|.....-+ ..+ -+..+++|++|++++|.++... +..+ ++|+.|++++|++++
T Consensus 287 ~L~~L~Ls~n~~l~~l~~~~~~L~~L--~l~~~~~L~~L~L~~N~l~~l~---l~~l-----~~L~~L~l~~N~l~~ 353 (457)
T 3bz5_A 287 KIKELDVTHNTQLYLLDCQAAGITEL--DLSQNPKLVYLYLNNTELTELD---VSHN-----TKLKSLSCVNAHIQD 353 (457)
T ss_dssp TCCCCCCTTCTTCCEEECTTCCCSCC--CCTTCTTCCEEECTTCCCSCCC---CTTC-----TTCSEEECCSSCCCB
T ss_pred cCCEEECCCCcccceeccCCCcceEe--chhhcccCCEEECCCCcccccc---cccC-----CcCcEEECCCCCCCC
Confidence 88888888886322100 001 1455678888888888877641 2222 668888888888875
No 44
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.90 E-value=8.8e-25 Score=239.09 Aligned_cols=297 Identities=16% Similarity=0.179 Sum_probs=234.9
Q ss_pred HHHHhcCCCcEEEcCCCCCCHHHHHHHHHHhccCCCccEEEeccCCCCHHHHHHHHHHhhhCCCccEEEccCCCCChhHH
Q 007577 156 EFAKELRAFSSVDMSGRNFGDEGLFFLAESLGYNQTAEEVSFAANGITAAGIKAFDGVLQSNIALKTLNLSGNPIGDEGV 235 (597)
Q Consensus 156 ~~~~~~~~L~~L~Ls~~~l~~~~~~~l~~~l~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~ 235 (597)
.++..+++|++|+|++|.+.... +..+..+++|+.|+|++|.++... +..+..+++|++|+|++|.++...
T Consensus 69 ~~~~~l~~L~~L~L~~n~l~~~~----~~~~~~l~~L~~L~L~~n~l~~~~----~~~~~~l~~L~~L~L~~n~l~~l~- 139 (597)
T 3oja_B 69 ALLDSFRQVELLNLNDLQIEEID----TYAFAYAHTIQKLYMGFNAIRYLP----PHVFQNVPLLTVLVLERNDLSSLP- 139 (597)
T ss_dssp HHHHHCCCCSEEECTTSCCCEEC----TTTTTTCTTCCEEECCSSCCCCCC----TTTTTTCTTCCEEECCSSCCCCCC-
T ss_pred HHHccCCCCcEEECCCCCCCCCC----hHHhcCCCCCCEEECCCCcCCCCC----HHHHcCCCCCCEEEeeCCCCCCCC-
Confidence 45678999999999999997642 346778899999999999987542 234567899999999999998542
Q ss_pred HHHHHHHhcCCCcCEEEecCCCCChHHHHHHHHHHHcCCCccEEEeccCCCChhhHHHHHHHHhhCCCccEEEcCCCCCC
Q 007577 236 KCLCDILVDNAGVERLQLSSVDLRDEGAKAIAELLKNNSILRVLELNNNMIDYSGFTSLAEALLENSTIRSLHLNGNYGG 315 (597)
Q Consensus 236 ~~l~~~l~~~~~L~~L~Ls~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~i~ 315 (597)
...+..+++|++|++++|.++.. .+..+..+++|++|++++|.++... +..+++|+.|++++|.++
T Consensus 140 ---~~~~~~l~~L~~L~Ls~N~l~~~----~~~~~~~l~~L~~L~L~~N~l~~~~-------~~~l~~L~~L~l~~n~l~ 205 (597)
T 3oja_B 140 ---RGIFHNTPKLTTLSMSNNNLERI----EDDTFQATTSLQNLQLSSNRLTHVD-------LSLIPSLFHANVSYNLLS 205 (597)
T ss_dssp ---TTTTTTCTTCCEEECCSSCCCBC----CTTTTTTCTTCCEEECTTSCCSBCC-------GGGCTTCSEEECCSSCCS
T ss_pred ---HHHhccCCCCCEEEeeCCcCCCC----ChhhhhcCCcCcEEECcCCCCCCcC-------hhhhhhhhhhhcccCccc
Confidence 12345679999999999999875 2334566799999999999997642 446799999999999886
Q ss_pred hHHHHHHHHHhhcCCCCCEEEccCCCCChHHHHHHHHhhhcCccccceeeccCCCCChhHHHHHHHHHHcCCCCcEEEcc
Q 007577 316 ALGANALAKGLEGNKSLRELHLHGNSIGDEGIRALMSGLSSRKGKLAVLDIGNNSISAKGAFHVAEYIKNCKSLLWINLY 395 (597)
Q Consensus 316 ~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~Ls 395 (597)
.. ...++|+.|++++|.++.... ...++|+.|++++|.+++. ..+..+++|++|+|+
T Consensus 206 ~l---------~~~~~L~~L~ls~n~l~~~~~--------~~~~~L~~L~L~~n~l~~~------~~l~~l~~L~~L~Ls 262 (597)
T 3oja_B 206 TL---------AIPIAVEELDASHNSINVVRG--------PVNVELTILKLQHNNLTDT------AWLLNYPGLVEVDLS 262 (597)
T ss_dssp EE---------ECCTTCSEEECCSSCCCEEEC--------SCCSCCCEEECCSSCCCCC------GGGGGCTTCSEEECC
T ss_pred cc---------cCCchhheeeccCCccccccc--------ccCCCCCEEECCCCCCCCC------hhhccCCCCCEEECC
Confidence 53 356789999999999875321 1224899999999999983 457889999999999
Q ss_pred CCCCCcHHHHHHHHHHhcCCCccEEEccCCCCChHHHHHHHHHhhcCCCcCEEECcCCCCCHHHHHHHHHHHhhCCCcCE
Q 007577 396 MNDIGDEGAEKIADALKQNRTITTIDLGGNNIHSKGASAIARVLKDNSVITSLDLAYNPIGADGAKALSEVLKFHGNINT 475 (597)
Q Consensus 396 ~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~ 475 (597)
+|.+++. .+..+..+++|++|+|++|.++.. ...+..+++|++|+|++|.++.. ...+..+++|++
T Consensus 263 ~N~l~~~----~~~~~~~l~~L~~L~Ls~N~l~~l-----~~~~~~l~~L~~L~Ls~N~l~~i-----~~~~~~l~~L~~ 328 (597)
T 3oja_B 263 YNELEKI----MYHPFVKMQRLERLYISNNRLVAL-----NLYGQPIPTLKVLDLSHNHLLHV-----ERNQPQFDRLEN 328 (597)
T ss_dssp SSCCCEE----ESGGGTTCSSCCEEECTTSCCCEE-----ECSSSCCTTCCEEECCSSCCCCC-----GGGHHHHTTCSE
T ss_pred CCccCCC----CHHHhcCccCCCEEECCCCCCCCC-----CcccccCCCCcEEECCCCCCCcc-----CcccccCCCCCE
Confidence 9999875 345677789999999999999873 33345579999999999998743 222344589999
Q ss_pred EecCCCCCChhHHHHHHHHHhcCCCccEEEccCCCCChHHHHHH
Q 007577 476 LKLGWCQIGASGAEFVADMLRYNNTISILDLRANGLRDEGAKCL 519 (597)
Q Consensus 476 L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~n~i~~~~~~~l 519 (597)
|++++|.++... +..+++|+.|++++|.+.......+
T Consensus 329 L~L~~N~l~~~~-------~~~~~~L~~L~l~~N~~~~~~~~~~ 365 (597)
T 3oja_B 329 LYLDHNSIVTLK-------LSTHHTLKNLTLSHNDWDCNSLRAL 365 (597)
T ss_dssp EECCSSCCCCCC-------CCTTCCCSEEECCSSCEEHHHHHHH
T ss_pred EECCCCCCCCcC-------hhhcCCCCEEEeeCCCCCChhHHHH
Confidence 999999997763 4556999999999999987654444
No 45
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.89 E-value=1e-21 Score=200.76 Aligned_cols=211 Identities=20% Similarity=0.283 Sum_probs=139.8
Q ss_pred CCCCEEEccCCCCChHHHHHHHHhhhcCccccceeeccCCCCChhHHHHHHHHHHcCCCCcEEEccCCCCCcHHHHHHHH
Q 007577 330 KSLRELHLHGNSIGDEGIRALMSGLSSRKGKLAVLDIGNNSISAKGAFHVAEYIKNCKSLLWINLYMNDIGDEGAEKIAD 409 (597)
Q Consensus 330 ~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~ 409 (597)
+.|++|++++|.+++.+...+...+....++|+.|+|++|.+++.+...+...+. +|++|+|++|.+++.+...++.
T Consensus 72 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~---~L~~L~Ls~n~l~~~~~~~L~~ 148 (372)
T 3un9_A 72 SSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFL---RARKLGLQLNSLGPEACKDLRD 148 (372)
T ss_dssp TTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHH---TEEEEECCSSCCCHHHHHHHHH
T ss_pred hhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHH---hccHhhcCCCCCCHHHHHHHHH
Confidence 4566666666666666666666555544446666777766666665554444433 5677777777777777777776
Q ss_pred HHh-cCCCccEEEccCCCCChHHHHHHHHHhhcCCCcCEEECcCCCCCHHHHHHHHHHHhhCCCcCEEecCCCCCChhHH
Q 007577 410 ALK-QNRTITTIDLGGNNIHSKGASAIARVLKDNSVITSLDLAYNPIGADGAKALSEVLKFHGNINTLKLGWCQIGASGA 488 (597)
Q Consensus 410 ~l~-~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~ 488 (597)
.+. .+++|++|+|++|.|++.+...++..+..+++|++|+|++|.|++.++..+...+..+++|++|+|++|.|++.+.
T Consensus 149 ~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~ 228 (372)
T 3un9_A 149 LLLHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAA 228 (372)
T ss_dssp HHHSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHH
T ss_pred HHHhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHH
Confidence 664 3567777777777777777777777777777777777777777777777777777777777777777777777777
Q ss_pred HHHHHHHhcCCCccEEEccCCCCChHHHHHHHHHHhhcCccccEEE--ccCCCCChH
Q 007577 489 EFVADMLRYNNTISILDLRANGLRDEGAKCLAQSFKVVNEALTSID--LAFNEIRDD 543 (597)
Q Consensus 489 ~~l~~~l~~~~~L~~L~l~~n~i~~~~~~~l~~~l~~~n~~L~~L~--Ls~n~i~~~ 543 (597)
..++..+..+++|++|+|++|.|++.+...+..........|+.+. +..|.+++.
T Consensus 229 ~~l~~~L~~~~~L~~L~Ls~N~i~~~g~~~L~~~~~~~~~~L~~l~~ll~~~~~~~~ 285 (372)
T 3un9_A 229 LALARAAREHPSLELLHLYFNELSSEGRQVLRDLGGAAEGGARVVVSLTEGTAVSEY 285 (372)
T ss_dssp HHHHHHHHHCSSCCEEECTTSSCCHHHHHHHHHCC------CEEECCCC----CHHH
T ss_pred HHHHHHHHhCCCCCEEeccCCCCCHHHHHHHHHHhcCCCccchhhHhhhcCCccCHH
Confidence 7777777777777777777777777777777664331111266666 666666654
No 46
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.89 E-value=1.4e-26 Score=252.46 Aligned_cols=188 Identities=16% Similarity=0.196 Sum_probs=141.1
Q ss_pred hcCCCCCEEEccCCCCChHH--HHHHHHhhhcCccccceeeccCCCCChhHHHHHHHHHHcCCCCcEEEccCCCCCcHHH
Q 007577 327 EGNKSLRELHLHGNSIGDEG--IRALMSGLSSRKGKLAVLDIGNNSISAKGAFHVAEYIKNCKSLLWINLYMNDIGDEGA 404 (597)
Q Consensus 327 ~~~~~L~~L~Ls~n~i~~~~--~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~ 404 (597)
..+++|++|++++|.++..+ ...+ ..+++|+.|++++|.++. ++..+..+++|++|++++|.+.+...
T Consensus 344 ~~~~~L~~L~l~~n~l~~~~~~~~~~-----~~~~~L~~L~l~~n~l~~-----~~~~~~~l~~L~~L~l~~n~l~~~~~ 413 (570)
T 2z63_A 344 VDLPSLEFLDLSRNGLSFKGCCSQSD-----FGTTSLKYLDLSFNGVIT-----MSSNFLGLEQLEHLDFQHSNLKQMSE 413 (570)
T ss_dssp CBCTTCCEEECCSSCCBEEEEEEHHH-----HTCSCCCEEECCSCSEEE-----EEEEEETCTTCCEEECTTSEEESCTT
T ss_pred ccCCCCCEEeCcCCccCccccccccc-----cccCccCEEECCCCcccc-----ccccccccCCCCEEEccCCccccccc
Confidence 35678899999999886532 1112 345689999999998877 23336789999999999998765311
Q ss_pred HHHHHHHhcCCCccEEEccCCCCChHHHHHHHHHhhcCCCcCEEECcCCCCCHHHHHHHHHHHhhCCCcCEEecCCCCCC
Q 007577 405 EKIADALKQNRTITTIDLGGNNIHSKGASAIARVLKDNSVITSLDLAYNPIGADGAKALSEVLKFHGNINTLKLGWCQIG 484 (597)
Q Consensus 405 ~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~i~ 484 (597)
...+..+++|++|++++|.++.. ....+..+++|++|++++|.+++.. +...+..+++|++|++++|+++
T Consensus 414 ---~~~~~~l~~L~~L~l~~n~l~~~----~~~~~~~l~~L~~L~l~~n~l~~~~---~p~~~~~l~~L~~L~l~~n~l~ 483 (570)
T 2z63_A 414 ---FSVFLSLRNLIYLDISHTHTRVA----FNGIFNGLSSLEVLKMAGNSFQENF---LPDIFTELRNLTFLDLSQCQLE 483 (570)
T ss_dssp ---SCTTTTCTTCCEEECTTSCCEEC----CTTTTTTCTTCCEEECTTCEEGGGE---ECSCCTTCTTCCEEECTTSCCC
T ss_pred ---hhhhhcCCCCCEEeCcCCccccc----chhhhhcCCcCcEEECcCCcCcccc---chhhhhcccCCCEEECCCCccc
Confidence 12356789999999999998764 2334667799999999999876321 2244567899999999999998
Q ss_pred hhHHHHHHHHHhcCCCccEEEccCCCCChHHHHHHHHHHhhcCccccEEEccCCCCChH
Q 007577 485 ASGAEFVADMLRYNNTISILDLRANGLRDEGAKCLAQSFKVVNEALTSIDLAFNEIRDD 543 (597)
Q Consensus 485 ~~~~~~l~~~l~~~~~L~~L~l~~n~i~~~~~~~l~~~l~~~n~~L~~L~Ls~n~i~~~ 543 (597)
+..+.. +..+++|++|++++|.+++.....+... ++|++|++++|.++..
T Consensus 484 ~~~~~~----~~~l~~L~~L~l~~n~l~~~~~~~~~~l-----~~L~~L~l~~N~~~~~ 533 (570)
T 2z63_A 484 QLSPTA----FNSLSSLQVLNMASNQLKSVPDGIFDRL-----TSLQKIWLHTNPWDCS 533 (570)
T ss_dssp EECTTT----TTTCTTCCEEECCSSCCSCCCTTTTTTC-----TTCCEEECCSSCBCCC
T ss_pred cCChhh----hhcccCCCEEeCCCCcCCCCCHHHhhcc-----cCCcEEEecCCcccCC
Confidence 765443 4567999999999999988654444433 7899999999998754
No 47
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.89 E-value=9.7e-25 Score=230.12 Aligned_cols=316 Identities=17% Similarity=0.168 Sum_probs=235.1
Q ss_pred HHhcCCCcEEEcCCCCCCHHHHHHHHHHhccCCCccEEEeccCCCCHHHHHHHHHHhhhCCCccEEEccCCCCChhHHHH
Q 007577 158 AKELRAFSSVDMSGRNFGDEGLFFLAESLGYNQTAEEVSFAANGITAAGIKAFDGVLQSNIALKTLNLSGNPIGDEGVKC 237 (597)
Q Consensus 158 ~~~~~~L~~L~Ls~~~l~~~~~~~l~~~l~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~ 237 (597)
+..+++|++|++++|.++.. .+..+++|+.|++++|.++... +..+++|++|++++|.++...
T Consensus 60 l~~l~~L~~L~Ls~n~l~~~-------~~~~l~~L~~L~Ls~N~l~~~~-------~~~l~~L~~L~L~~N~l~~l~--- 122 (457)
T 3bz5_A 60 IEKLTGLTKLICTSNNITTL-------DLSQNTNLTYLACDSNKLTNLD-------VTPLTKLTYLNCDTNKLTKLD--- 122 (457)
T ss_dssp GGGCTTCSEEECCSSCCSCC-------CCTTCTTCSEEECCSSCCSCCC-------CTTCTTCCEEECCSSCCSCCC---
T ss_pred hcccCCCCEEEccCCcCCeE-------ccccCCCCCEEECcCCCCceee-------cCCCCcCCEEECCCCcCCeec---
Confidence 45789999999999999873 1677899999999999988641 567899999999999998642
Q ss_pred HHHHHhcCCCcCEEEecCCCCChHHHHHHHHHHHcCCCccEEEeccCC-CChhhHHHHHHHHhhCCCccEEEcCCCCCCh
Q 007577 238 LCDILVDNAGVERLQLSSVDLRDEGAKAIAELLKNNSILRVLELNNNM-IDYSGFTSLAEALLENSTIRSLHLNGNYGGA 316 (597)
Q Consensus 238 l~~~l~~~~~L~~L~Ls~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~-i~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~ 316 (597)
+..+++|++|++++|.++.. .+..+++|++|++++|. ++.. .+..+++|++|++++|.++.
T Consensus 123 ----~~~l~~L~~L~l~~N~l~~l-------~l~~l~~L~~L~l~~n~~~~~~-------~~~~l~~L~~L~ls~n~l~~ 184 (457)
T 3bz5_A 123 ----VSQNPLLTYLNCARNTLTEI-------DVSHNTQLTELDCHLNKKITKL-------DVTPQTQLTTLDCSFNKITE 184 (457)
T ss_dssp ----CTTCTTCCEEECTTSCCSCC-------CCTTCTTCCEEECTTCSCCCCC-------CCTTCTTCCEEECCSSCCCC
T ss_pred ----CCCCCcCCEEECCCCcccee-------ccccCCcCCEEECCCCCccccc-------ccccCCcCCEEECCCCccce
Confidence 55689999999999999874 15567999999999994 4332 25578999999999999887
Q ss_pred HHHHHHHHHhhcCCCCCEEEccCCCCChHHHHHHHHhhhcCccccceeeccCCCCChhHHHHHHHHHHcCCCCcEEEccC
Q 007577 317 LGANALAKGLEGNKSLRELHLHGNSIGDEGIRALMSGLSSRKGKLAVLDIGNNSISAKGAFHVAEYIKNCKSLLWINLYM 396 (597)
Q Consensus 317 ~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~ 396 (597)
.+ +..+++|+.|++++|.+++.. ...+++|+.|++++|.++. ++ +..+++|++|++++
T Consensus 185 l~-------l~~l~~L~~L~l~~N~l~~~~--------l~~l~~L~~L~Ls~N~l~~-----ip--~~~l~~L~~L~l~~ 242 (457)
T 3bz5_A 185 LD-------VSQNKLLNRLNCDTNNITKLD--------LNQNIQLTFLDCSSNKLTE-----ID--VTPLTQLTYFDCSV 242 (457)
T ss_dssp CC-------CTTCTTCCEEECCSSCCSCCC--------CTTCTTCSEEECCSSCCSC-----CC--CTTCTTCSEEECCS
T ss_pred ec-------cccCCCCCEEECcCCcCCeec--------cccCCCCCEEECcCCcccc-----cC--ccccCCCCEEEeeC
Confidence 53 568899999999999988742 1456799999999999998 33 67899999999999
Q ss_pred CCCCcHHHHHHHHHHhcCCCccEEEccCCCCChHHHH------HHHHHhhcCCCcCEEECcCCCCCHHH------HHHHH
Q 007577 397 NDIGDEGAEKIADALKQNRTITTIDLGGNNIHSKGAS------AIARVLKDNSVITSLDLAYNPIGADG------AKALS 464 (597)
Q Consensus 397 n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~------~l~~~l~~~~~L~~L~Ls~n~i~~~~------~~~l~ 464 (597)
|.+++.. +..+++|+.|++++|++....+. .++ ...|++|+.|++++|.....- +..+
T Consensus 243 N~l~~~~-------~~~l~~L~~L~l~~n~L~~L~l~~n~~~~~~~--~~~l~~L~~L~Ls~n~~l~~l~~~~~~L~~L- 312 (457)
T 3bz5_A 243 NPLTELD-------VSTLSKLTTLHCIQTDLLEIDLTHNTQLIYFQ--AEGCRKIKELDVTHNTQLYLLDCQAAGITEL- 312 (457)
T ss_dssp SCCSCCC-------CTTCTTCCEEECTTCCCSCCCCTTCTTCCEEE--CTTCTTCCCCCCTTCTTCCEEECTTCCCSCC-
T ss_pred CcCCCcC-------HHHCCCCCEEeccCCCCCEEECCCCccCCccc--ccccccCCEEECCCCcccceeccCCCcceEe-
Confidence 9998742 23456666555555544321100 011 245689999999999632110 0111
Q ss_pred HHHhhCCCcCEEecCCCCCChhHHHHHHHHHhcCCCccEEEccCCCCChHHHHHHHHHHhhcCccccEEEccCCCCChHH
Q 007577 465 EVLKFHGNINTLKLGWCQIGASGAEFVADMLRYNNTISILDLRANGLRDEGAKCLAQSFKVVNEALTSIDLAFNEIRDDG 544 (597)
Q Consensus 465 ~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~n~i~~~~~~~l~~~l~~~n~~L~~L~Ls~n~i~~~~ 544 (597)
.+..+++|++|++++|+++... +..+++|+.|++++|++++. +.|..|++++|.+...+
T Consensus 313 -~l~~~~~L~~L~L~~N~l~~l~-------l~~l~~L~~L~l~~N~l~~l-------------~~L~~L~l~~n~l~g~~ 371 (457)
T 3bz5_A 313 -DLSQNPKLVYLYLNNTELTELD-------VSHNTKLKSLSCVNAHIQDF-------------SSVGKIPALNNNFEAEG 371 (457)
T ss_dssp -CCTTCTTCCEEECTTCCCSCCC-------CTTCTTCSEEECCSSCCCBC-------------TTGGGSSGGGTSEEEEE
T ss_pred -chhhcccCCEEECCCCcccccc-------cccCCcCcEEECCCCCCCCc-------------cccccccccCCcEEecc
Confidence 1456789999999999998751 56789999999999999972 34666677777766431
Q ss_pred HHHHHHHHHhCCCCceeEEEcccCccch
Q 007577 545 AFAIAQALKANEDVAVTSLNLANNFLTK 572 (597)
Q Consensus 545 ~~~l~~~l~~~~~~~L~~L~L~~N~i~~ 572 (597)
. ...+..+++++|.++.
T Consensus 372 -----~------~~~l~~l~l~~N~l~g 388 (457)
T 3bz5_A 372 -----Q------TITMPKETLTNNSLTI 388 (457)
T ss_dssp -----E------EEECCCBCCBTTBEEE
T ss_pred -----e------eeecCccccccCcEEE
Confidence 1 1236667777777663
No 48
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.88 E-value=8.6e-21 Score=193.89 Aligned_cols=211 Identities=26% Similarity=0.323 Sum_probs=179.8
Q ss_pred cCCCcEEEcCCCCCCHHHHHHHHHHhccC-CCccEEEeccCCCCHHHHHHHHHHhhhCCCccEEEccCCCCChhHHHHHH
Q 007577 161 LRAFSSVDMSGRNFGDEGLFFLAESLGYN-QTAEEVSFAANGITAAGIKAFDGVLQSNIALKTLNLSGNPIGDEGVKCLC 239 (597)
Q Consensus 161 ~~~L~~L~Ls~~~l~~~~~~~l~~~l~~~-~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~ 239 (597)
.+++++|+|++|.+++.+...++..+... ++|++|+|++|.+++.++..+...+. +|++|+|++|.+++.+...++
T Consensus 71 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~---~L~~L~Ls~n~l~~~~~~~L~ 147 (372)
T 3un9_A 71 LSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFL---RARKLGLQLNSLGPEACKDLR 147 (372)
T ss_dssp HTTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHH---TEEEEECCSSCCCHHHHHHHH
T ss_pred HhhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHH---hccHhhcCCCCCCHHHHHHHH
Confidence 47799999999999999999999888865 69999999999999998888877665 599999999999999999999
Q ss_pred HHHhc-CCCcCEEEecCCCCChHHHHHHHHHHHcCCCccEEEeccCCCChhhHHHHHHHHhhCCCccEEEcCCCCCChHH
Q 007577 240 DILVD-NAGVERLQLSSVDLRDEGAKAIAELLKNNSILRVLELNNNMIDYSGFTSLAEALLENSTIRSLHLNGNYGGALG 318 (597)
Q Consensus 240 ~~l~~-~~~L~~L~Ls~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~ 318 (597)
..+.. +++|++|+|++|.+++.++..++..+..+++|++|+|++|.|++.++..++.++..+++|++|+|++|.+++.+
T Consensus 148 ~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g 227 (372)
T 3un9_A 148 DLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTA 227 (372)
T ss_dssp HHHHSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHH
T ss_pred HHHHhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHH
Confidence 88864 78999999999999999999999999999999999999999999999999999988999999999999999999
Q ss_pred HHHHHHHhhcCCCCCEEEccCCCCChHHHHHHHHhhhcCccccceee--ccCCCCChh
Q 007577 319 ANALAKGLEGNKSLRELHLHGNSIGDEGIRALMSGLSSRKGKLAVLD--IGNNSISAK 374 (597)
Q Consensus 319 ~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~--Ls~n~l~~~ 374 (597)
...++.++..+++|++|++++|.|++.++..+........+.|+.+. +..+.++..
T Consensus 228 ~~~l~~~L~~~~~L~~L~Ls~N~i~~~g~~~L~~~~~~~~~~L~~l~~ll~~~~~~~~ 285 (372)
T 3un9_A 228 ALALARAAREHPSLELLHLYFNELSSEGRQVLRDLGGAAEGGARVVVSLTEGTAVSEY 285 (372)
T ss_dssp HHHHHHHHHHCSSCCEEECTTSSCCHHHHHHHHHCC------CEEECCCC----CHHH
T ss_pred HHHHHHHHHhCCCCCEEeccCCCCCHHHHHHHHHHhcCCCccchhhHhhhcCCccCHH
Confidence 98999989899999999999999999988887764433212377777 677766654
No 49
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.87 E-value=1.1e-24 Score=220.49 Aligned_cols=296 Identities=19% Similarity=0.175 Sum_probs=165.6
Q ss_pred CCcEEEcCCCCCCHHHHHHHHHHhccCCCccEEEeccCCCCHHHHHHHHHHhhhCCCccEEEccCCCCChhHHHHHHHHH
Q 007577 163 AFSSVDMSGRNFGDEGLFFLAESLGYNQTAEEVSFAANGITAAGIKAFDGVLQSNIALKTLNLSGNPIGDEGVKCLCDIL 242 (597)
Q Consensus 163 ~L~~L~Ls~~~l~~~~~~~l~~~l~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l 242 (597)
+++.++++++.+... +..+ .++++.|++++|.++.... ..+..+++|++|++++|.++... +..+
T Consensus 32 ~l~~l~~~~~~l~~l-----p~~~--~~~l~~L~L~~n~i~~~~~----~~~~~l~~L~~L~L~~n~l~~~~----~~~~ 96 (330)
T 1xku_A 32 HLRVVQCSDLGLEKV-----PKDL--PPDTALLDLQNNKITEIKD----GDFKNLKNLHTLILINNKISKIS----PGAF 96 (330)
T ss_dssp ETTEEECTTSCCCSC-----CCSC--CTTCCEEECCSSCCCCBCT----TTTTTCTTCCEEECCSSCCCCBC----TTTT
T ss_pred CCeEEEecCCCcccc-----CccC--CCCCeEEECCCCcCCEeCh----hhhccCCCCCEEECCCCcCCeeC----HHHh
Confidence 366777777666532 2111 2577778888877764321 23456677888888877776542 2334
Q ss_pred hcCCCcCEEEecCCCCChHHHHHHHHHHHcCCCccEEEeccCCCChhhHHHHHHHHhhCCCccEEEcCCCCCChHHHHHH
Q 007577 243 VDNAGVERLQLSSVDLRDEGAKAIAELLKNNSILRVLELNNNMIDYSGFTSLAEALLENSTIRSLHLNGNYGGALGANAL 322 (597)
Q Consensus 243 ~~~~~L~~L~Ls~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l 322 (597)
..+++|++|++++|.++.. +..+ .++|++|++++|.++... ...+..+++|++|++++|.+...+. .
T Consensus 97 ~~l~~L~~L~Ls~n~l~~l-----~~~~--~~~L~~L~l~~n~l~~~~----~~~~~~l~~L~~L~l~~n~l~~~~~--~ 163 (330)
T 1xku_A 97 APLVKLERLYLSKNQLKEL-----PEKM--PKTLQELRVHENEITKVR----KSVFNGLNQMIVVELGTNPLKSSGI--E 163 (330)
T ss_dssp TTCTTCCEEECCSSCCSBC-----CSSC--CTTCCEEECCSSCCCBBC----HHHHTTCTTCCEEECCSSCCCGGGB--C
T ss_pred cCCCCCCEEECCCCcCCcc-----Chhh--cccccEEECCCCcccccC----HhHhcCCccccEEECCCCcCCccCc--C
Confidence 4567788888877777642 1111 156777777777776432 3345567777777777777654221 1
Q ss_pred HHHhhcCCCCCEEEccCCCCChHHHHHHHHhhhcCccccceeeccCCCCChhHHHHHHHHHHcCCCCcEEEccCCCCCcH
Q 007577 323 AKGLEGNKSLRELHLHGNSIGDEGIRALMSGLSSRKGKLAVLDIGNNSISAKGAFHVAEYIKNCKSLLWINLYMNDIGDE 402 (597)
Q Consensus 323 ~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~ 402 (597)
...+..+++|++|++++|.++.. ...+ .++|+.|++++|.++.. .+..+..+++|++|++++|.+++.
T Consensus 164 ~~~~~~l~~L~~L~l~~n~l~~l-----~~~~---~~~L~~L~l~~n~l~~~----~~~~~~~l~~L~~L~Ls~n~l~~~ 231 (330)
T 1xku_A 164 NGAFQGMKKLSYIRIADTNITTI-----PQGL---PPSLTELHLDGNKITKV----DAASLKGLNNLAKLGLSFNSISAV 231 (330)
T ss_dssp TTGGGGCTTCCEEECCSSCCCSC-----CSSC---CTTCSEEECTTSCCCEE----CTGGGTTCTTCCEEECCSSCCCEE
T ss_pred hhhccCCCCcCEEECCCCccccC-----Cccc---cccCCEEECCCCcCCcc----CHHHhcCCCCCCEEECCCCcCcee
Confidence 13456677777777777776541 1111 14677777777777662 234456667777777777776653
Q ss_pred HHHHHHHHHhcCCCccEEEccCCCCChHHHHHHHHHhhcCCCcCEEECcCCCCCHHHHHHHHHHH--hhCCCcCEEecCC
Q 007577 403 GAEKIADALKQNRTITTIDLGGNNIHSKGASAIARVLKDNSVITSLDLAYNPIGADGAKALSEVL--KFHGNINTLKLGW 480 (597)
Q Consensus 403 ~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l--~~~~~L~~L~L~~ 480 (597)
....+..+++|++|++++|.++. ++..+..+++|++|++++|.|+..+...+.... .....++.|++++
T Consensus 232 ----~~~~~~~l~~L~~L~L~~N~l~~-----lp~~l~~l~~L~~L~l~~N~i~~~~~~~f~~~~~~~~~~~l~~l~l~~ 302 (330)
T 1xku_A 232 ----DNGSLANTPHLRELHLNNNKLVK-----VPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFS 302 (330)
T ss_dssp ----CTTTGGGSTTCCEEECCSSCCSS-----CCTTTTTCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCS
T ss_pred ----ChhhccCCCCCCEEECCCCcCcc-----CChhhccCCCcCEEECCCCcCCccChhhcCCcccccccccccceEeec
Confidence 11234556677777777776663 333455566677777777666543322221110 0123455555555
Q ss_pred CCCChhHHHHHHHHHhcCCCccEEEccCC
Q 007577 481 CQIGASGAEFVADMLRYNNTISILDLRAN 509 (597)
Q Consensus 481 n~i~~~~~~~l~~~l~~~~~L~~L~l~~n 509 (597)
|.+..... ....+..+++++.+++++|
T Consensus 303 N~~~~~~i--~~~~f~~~~~l~~l~L~~N 329 (330)
T 1xku_A 303 NPVQYWEI--QPSTFRCVYVRAAVQLGNY 329 (330)
T ss_dssp SSSCGGGS--CGGGGTTCCCGGGEEC---
T ss_pred Cccccccc--CccccccccceeEEEeccc
Confidence 55443211 0122333455555555544
No 50
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.87 E-value=1.3e-23 Score=214.52 Aligned_cols=260 Identities=15% Similarity=0.124 Sum_probs=127.8
Q ss_pred CCCccEEEeccCCCCHHHHHHHHHHhhhCCCccEEEccCCCCChhHHHHHHHHHhcCCCcCEEEecCCCCChHHHHHHHH
Q 007577 189 NQTAEEVSFAANGITAAGIKAFDGVLQSNIALKTLNLSGNPIGDEGVKCLCDILVDNAGVERLQLSSVDLRDEGAKAIAE 268 (597)
Q Consensus 189 ~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~~~l~~~~~~~l~~ 268 (597)
|+.....+++++.++.. +..+ .++|++|++++|.++.... ..+..+++|++|++++|.++... ..
T Consensus 30 C~~~~~c~~~~~~l~~i-----P~~~--~~~L~~L~l~~n~i~~~~~----~~~~~l~~L~~L~L~~n~l~~~~----~~ 94 (353)
T 2z80_A 30 CDRNGICKGSSGSLNSI-----PSGL--TEAVKSLDLSNNRITYISN----SDLQRCVNLQALVLTSNGINTIE----ED 94 (353)
T ss_dssp ECTTSEEECCSTTCSSC-----CTTC--CTTCCEEECTTSCCCEECT----TTTTTCTTCCEEECTTSCCCEEC----TT
T ss_pred CCCCeEeeCCCCCcccc-----cccc--cccCcEEECCCCcCcccCH----HHhccCCCCCEEECCCCccCccC----Hh
Confidence 55666677777766532 1111 1467777777777765422 12344577777777777766531 22
Q ss_pred HHHcCCCccEEEeccCCCChhhHHHHHHHHhhCCCccEEEcCCCCCChHHHHHHHHHhhcCCCCCEEEccCCC-CChHHH
Q 007577 269 LLKNNSILRVLELNNNMIDYSGFTSLAEALLENSTIRSLHLNGNYGGALGANALAKGLEGNKSLRELHLHGNS-IGDEGI 347 (597)
Q Consensus 269 ~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~-i~~~~~ 347 (597)
.+..+++|++|++++|+++... ...+..+++|++|++++|.++..+.. ..+..+++|++|++++|. ++....
T Consensus 95 ~~~~l~~L~~L~Ls~n~l~~~~----~~~~~~l~~L~~L~L~~n~l~~l~~~---~~~~~l~~L~~L~l~~n~~~~~~~~ 167 (353)
T 2z80_A 95 SFSSLGSLEHLDLSYNYLSNLS----SSWFKPLSSLTFLNLLGNPYKTLGET---SLFSHLTKLQILRVGNMDTFTKIQR 167 (353)
T ss_dssp TTTTCTTCCEEECCSSCCSSCC----HHHHTTCTTCSEEECTTCCCSSSCSS---CSCTTCTTCCEEEEEESSSCCEECT
T ss_pred hcCCCCCCCEEECCCCcCCcCC----HhHhCCCccCCEEECCCCCCcccCch---hhhccCCCCcEEECCCCccccccCH
Confidence 3444566777777777665321 22344566666666666665533210 124456666666666652 333211
Q ss_pred HHHHHhhhcCccccceeeccCCCCChhHHHHHHHHHHcCCCCcEEEccCCCCCcHHHHHHHHHHhcCCCccEEEccCCCC
Q 007577 348 RALMSGLSSRKGKLAVLDIGNNSISAKGAFHVAEYIKNCKSLLWINLYMNDIGDEGAEKIADALKQNRTITTIDLGGNNI 427 (597)
Q Consensus 348 ~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l 427 (597)
..+ ..+++|+.|++++|.++.. .+..+..+++|++|++++|.++.... ..+..+++|++|++++|.+
T Consensus 168 ~~~-----~~l~~L~~L~l~~n~l~~~----~~~~l~~l~~L~~L~l~~n~l~~~~~----~~~~~~~~L~~L~L~~n~l 234 (353)
T 2z80_A 168 KDF-----AGLTFLEELEIDASDLQSY----EPKSLKSIQNVSHLILHMKQHILLLE----IFVDVTSSVECLELRDTDL 234 (353)
T ss_dssp TTT-----TTCCEEEEEEEEETTCCEE----CTTTTTTCSEEEEEEEECSCSTTHHH----HHHHHTTTEEEEEEESCBC
T ss_pred HHc-----cCCCCCCEEECCCCCcCcc----CHHHHhccccCCeecCCCCccccchh----hhhhhcccccEEECCCCcc
Confidence 111 2334556666666555542 23344455555555555555543211 1122245555555555555
Q ss_pred ChHHHHHHHHHhhcCCCcCEEECcCCCCCHHHHHHHHHHHhhCCCcCEEecCCCCCC
Q 007577 428 HSKGASAIARVLKDNSVITSLDLAYNPIGADGAKALSEVLKFHGNINTLKLGWCQIG 484 (597)
Q Consensus 428 ~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~i~ 484 (597)
+......+.. ...++.++.++++++.+++.+...+...+..+++|++|++++|+++
T Consensus 235 ~~~~~~~l~~-~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l~ 290 (353)
T 2z80_A 235 DTFHFSELST-GETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQLK 290 (353)
T ss_dssp TTCCCC-------CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSSCCC
T ss_pred cccccccccc-ccccchhhccccccccccCcchhhhHHHHhcccCCCEEECCCCCCC
Confidence 4432221211 1223444444444444444444444444444444444444444443
No 51
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.86 E-value=7.4e-25 Score=241.88 Aligned_cols=161 Identities=20% Similarity=0.185 Sum_probs=114.1
Q ss_pred CCCcEEEcCCCCCCHHHHHHHHHHhccCCCccEEEeccCCCCHHHHHHHHHHhhhCCCccEEEccCCCCChhHHHHHHHH
Q 007577 162 RAFSSVDMSGRNFGDEGLFFLAESLGYNQTAEEVSFAANGITAAGIKAFDGVLQSNIALKTLNLSGNPIGDEGVKCLCDI 241 (597)
Q Consensus 162 ~~L~~L~Ls~~~l~~~~~~~l~~~l~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~ 241 (597)
+++++|||++|.|+... ...|..+++|+.|+|++|+|+... ...+..+++|++|+|++|+++.... ..
T Consensus 52 ~~~~~LdLs~N~i~~l~----~~~f~~l~~L~~L~Ls~N~i~~i~----~~~f~~L~~L~~L~Ls~N~l~~l~~----~~ 119 (635)
T 4g8a_A 52 FSTKNLDLSFNPLRHLG----SYSFFSFPELQVLDLSRCEIQTIE----DGAYQSLSHLSTLILTGNPIQSLAL----GA 119 (635)
T ss_dssp TTCCEEECTTSCCCEEC----TTTTTTCTTCCEEECTTCCCCEEC----TTTTTTCTTCCEEECTTCCCCEECG----GG
T ss_pred cCCCEEEeeCCCCCCCC----HHHHhCCCCCCEEECCCCcCCCcC----hhHhcCCCCCCEEEccCCcCCCCCH----HH
Confidence 46899999999987642 346778899999999999987542 2345678899999999999886532 34
Q ss_pred HhcCCCcCEEEecCCCCChHHHHHHHHHHHcCCCccEEEeccCCCChhhHHHHHHHHhhCCCccEEEcCCCCCChHHHHH
Q 007577 242 LVDNAGVERLQLSSVDLRDEGAKAIAELLKNNSILRVLELNNNMIDYSGFTSLAEALLENSTIRSLHLNGNYGGALGANA 321 (597)
Q Consensus 242 l~~~~~L~~L~Ls~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~ 321 (597)
+..+++|++|++++|+++.... ..+.++++|++|++++|.++... ++..+..+++|++|++++|.++......
T Consensus 120 f~~L~~L~~L~Ls~N~l~~l~~----~~~~~L~~L~~L~Ls~N~l~~~~---~~~~~~~l~~L~~L~L~~N~l~~~~~~~ 192 (635)
T 4g8a_A 120 FSGLSSLQKLVAVETNLASLEN----FPIGHLKTLKELNVAHNLIQSFK---LPEYFSNLTNLEHLDLSSNKIQSIYCTD 192 (635)
T ss_dssp GTTCTTCCEEECTTSCCCCSTT----CCCTTCTTCCEEECCSSCCCCCC---CCGGGGGCTTCCEEECCSSCCCEECGGG
T ss_pred hcCCCCCCEEECCCCcCCCCCh----hhhhcCcccCeeccccCccccCC---CchhhccchhhhhhcccCcccccccccc
Confidence 5567999999999999886421 23566789999999999886422 2445667899999999999887654433
Q ss_pred HHHHhhcCC-CCCEEEccCCCC
Q 007577 322 LAKGLEGNK-SLRELHLHGNSI 342 (597)
Q Consensus 322 l~~~l~~~~-~L~~L~Ls~n~i 342 (597)
+.. +...+ ....++++.|.+
T Consensus 193 l~~-L~~l~~~~~~~~ls~n~l 213 (635)
T 4g8a_A 193 LRV-LHQMPLLNLSLDLSLNPM 213 (635)
T ss_dssp GHH-HHTCTTCCCEEECTTCCC
T ss_pred ccc-hhhhhhhhhhhhcccCcc
Confidence 322 22322 233455554443
No 52
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.86 E-value=4.3e-21 Score=194.51 Aligned_cols=255 Identities=18% Similarity=0.220 Sum_probs=133.8
Q ss_pred CCcCEEEecCCCCChHHHHHHHHHHHcCCCccEEEeccCCCChhhHHHHHHHHhhCCCccEEEcCCCCCChHHHHHHHHH
Q 007577 246 AGVERLQLSSVDLRDEGAKAIAELLKNNSILRVLELNNNMIDYSGFTSLAEALLENSTIRSLHLNGNYGGALGANALAKG 325 (597)
Q Consensus 246 ~~L~~L~Ls~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~ 325 (597)
..++.++++++.+.+.. +...+. +.++.|++++|.+++... .+..+++|++|++++|.++... +...
T Consensus 47 ~~~~~l~l~~~~~~~~~---~~~~~~--~~l~~L~l~~n~l~~~~~-----~~~~~~~L~~L~L~~~~l~~~~---~~~~ 113 (336)
T 2ast_B 47 SLWQTLDLTGKNLHPDV---TGRLLS--QGVIAFRCPRSFMDQPLA-----EHFSPFRVQHMDLSNSVIEVST---LHGI 113 (336)
T ss_dssp TTSSEEECTTCBCCHHH---HHHHHH--TTCSEEECTTCEECSCCC-----SCCCCBCCCEEECTTCEECHHH---HHHH
T ss_pred hhheeeccccccCCHHH---HHhhhh--ccceEEEcCCccccccch-----hhccCCCCCEEEccCCCcCHHH---HHHH
Confidence 44777788777776432 222221 567777777776643211 1234566666666666654332 2234
Q ss_pred hhcCCCCCEEEccCCCCChHHHHHHHHhhhcCccccceeeccCC-CCChhHHHHHHHHHHcCCCCcEEEccCC-CCCcHH
Q 007577 326 LEGNKSLRELHLHGNSIGDEGIRALMSGLSSRKGKLAVLDIGNN-SISAKGAFHVAEYIKNCKSLLWINLYMN-DIGDEG 403 (597)
Q Consensus 326 l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~Ls~n-~l~~~~~~~l~~~l~~~~~L~~L~Ls~n-~l~~~~ 403 (597)
+..+++|++|++++|.+++.....+ ..+++|++|++++| .+++.+ ++..+..+++|++|++++| .+++.+
T Consensus 114 ~~~~~~L~~L~L~~~~l~~~~~~~l-----~~~~~L~~L~L~~~~~l~~~~---l~~~~~~~~~L~~L~l~~~~~l~~~~ 185 (336)
T 2ast_B 114 LSQCSKLQNLSLEGLRLSDPIVNTL-----AKNSNLVRLNLSGCSGFSEFA---LQTLLSSCSRLDELNLSWCFDFTEKH 185 (336)
T ss_dssp HTTBCCCSEEECTTCBCCHHHHHHH-----TTCTTCSEEECTTCBSCCHHH---HHHHHHHCTTCCEEECCCCTTCCHHH
T ss_pred HhhCCCCCEEeCcCcccCHHHHHHH-----hcCCCCCEEECCCCCCCCHHH---HHHHHhcCCCCCEEcCCCCCCcChHH
Confidence 5566666666666666665433333 23446666666666 455532 3344555666666666666 665543
Q ss_pred HHHHHHHHhcCC-CccEEEccCC--CCChHHHHHHHHHhhcCCCcCEEECcCCC-CCHHHHHHHHHHHhhCCCcCEEecC
Q 007577 404 AEKIADALKQNR-TITTIDLGGN--NIHSKGASAIARVLKDNSVITSLDLAYNP-IGADGAKALSEVLKFHGNINTLKLG 479 (597)
Q Consensus 404 ~~~l~~~l~~~~-~L~~L~L~~n--~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~-i~~~~~~~l~~~l~~~~~L~~L~L~ 479 (597)
+. ..+..++ +|++|++++| .+++..+. ..+..+++|++|++++|. +++..+..+ ..+++|++|+++
T Consensus 186 ~~---~~~~~l~~~L~~L~l~~~~~~~~~~~l~---~~~~~~~~L~~L~l~~~~~l~~~~~~~l----~~l~~L~~L~l~ 255 (336)
T 2ast_B 186 VQ---VAVAHVSETITQLNLSGYRKNLQKSDLS---TLVRRCPNLVHLDLSDSVMLKNDCFQEF----FQLNYLQHLSLS 255 (336)
T ss_dssp HH---HHHHHSCTTCCEEECCSCGGGSCHHHHH---HHHHHCTTCSEEECTTCTTCCGGGGGGG----GGCTTCCEEECT
T ss_pred HH---HHHHhcccCCCEEEeCCCcccCCHHHHH---HHHhhCCCCCEEeCCCCCcCCHHHHHHH----hCCCCCCEeeCC
Confidence 22 2233455 6666666666 45543322 233445666666666665 454433322 334566666666
Q ss_pred CC-CCChhHHHHHHHHHhcCCCccEEEccCCCCChHHHHHHHHHHhhcCccccEEEccCCCCChH
Q 007577 480 WC-QIGASGAEFVADMLRYNNTISILDLRANGLRDEGAKCLAQSFKVVNEALTSIDLAFNEIRDD 543 (597)
Q Consensus 480 ~n-~i~~~~~~~l~~~l~~~~~L~~L~l~~n~i~~~~~~~l~~~l~~~n~~L~~L~Ls~n~i~~~ 543 (597)
+| .+++.+.. .+..+++|+.|++++| +++.+...+... ++.|++++|.++..
T Consensus 256 ~~~~~~~~~~~----~l~~~~~L~~L~l~~~-i~~~~~~~l~~~-------l~~L~l~~n~l~~~ 308 (336)
T 2ast_B 256 RCYDIIPETLL----ELGEIPTLKTLQVFGI-VPDGTLQLLKEA-------LPHLQINCSHFTTI 308 (336)
T ss_dssp TCTTCCGGGGG----GGGGCTTCCEEECTTS-SCTTCHHHHHHH-------STTSEESCCCSCCT
T ss_pred CCCCCCHHHHH----HHhcCCCCCEEeccCc-cCHHHHHHHHhh-------CcceEEecccCccc
Confidence 65 34433321 1233456666666655 555444444332 44444555555543
No 53
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.86 E-value=1.2e-24 Score=220.21 Aligned_cols=246 Identities=19% Similarity=0.168 Sum_probs=125.9
Q ss_pred CccEEEeccCCCCHHHHHHHHHHhhhCCCccEEEccCCCCChhHHHHHHHHHhcCCCcCEEEecCCCCChHHHHHHHHHH
Q 007577 191 TAEEVSFAANGITAAGIKAFDGVLQSNIALKTLNLSGNPIGDEGVKCLCDILVDNAGVERLQLSSVDLRDEGAKAIAELL 270 (597)
Q Consensus 191 ~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~~~l~~~~~~~l~~~l 270 (597)
+++.++++++.++.. +..+ .++++.|++++|.++.... ..+..+++|++|++++|.++... +..+
T Consensus 32 ~l~~l~~~~~~l~~l-----p~~~--~~~l~~L~L~~n~i~~~~~----~~~~~l~~L~~L~L~~n~l~~~~----~~~~ 96 (330)
T 1xku_A 32 HLRVVQCSDLGLEKV-----PKDL--PPDTALLDLQNNKITEIKD----GDFKNLKNLHTLILINNKISKIS----PGAF 96 (330)
T ss_dssp ETTEEECTTSCCCSC-----CCSC--CTTCCEEECCSSCCCCBCT----TTTTTCTTCCEEECCSSCCCCBC----TTTT
T ss_pred CCeEEEecCCCcccc-----CccC--CCCCeEEECCCCcCCEeCh----hhhccCCCCCEEECCCCcCCeeC----HHHh
Confidence 677777777766532 1111 2467777777777765422 22344677777777777776531 2334
Q ss_pred HcCCCccEEEeccCCCChhhHHHHHHHHhhCCCccEEEcCCCCCChHHHHHHHHHhhcCCCCCEEEccCCCCChHHHHHH
Q 007577 271 KNNSILRVLELNNNMIDYSGFTSLAEALLENSTIRSLHLNGNYGGALGANALAKGLEGNKSLRELHLHGNSIGDEGIRAL 350 (597)
Q Consensus 271 ~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l 350 (597)
..+++|++|++++|+++.- +..+ .++|++|++++|.++.... ..+.++++|++|++++|.+...+..
T Consensus 97 ~~l~~L~~L~Ls~n~l~~l-----~~~~--~~~L~~L~l~~n~l~~~~~----~~~~~l~~L~~L~l~~n~l~~~~~~-- 163 (330)
T 1xku_A 97 APLVKLERLYLSKNQLKEL-----PEKM--PKTLQELRVHENEITKVRK----SVFNGLNQMIVVELGTNPLKSSGIE-- 163 (330)
T ss_dssp TTCTTCCEEECCSSCCSBC-----CSSC--CTTCCEEECCSSCCCBBCH----HHHTTCTTCCEEECCSSCCCGGGBC--
T ss_pred cCCCCCCEEECCCCcCCcc-----Chhh--cccccEEECCCCcccccCH----hHhcCCccccEEECCCCcCCccCcC--
Confidence 4557777777777766421 1111 2566777777666665443 2345666666666666666532110
Q ss_pred HHhhhcCccccceeeccCCCCChhHHHHHHHHHHcCCCCcEEEccCCCCCcHHHHHHHHHHhcCCCccEEEccCCCCChH
Q 007577 351 MSGLSSRKGKLAVLDIGNNSISAKGAFHVAEYIKNCKSLLWINLYMNDIGDEGAEKIADALKQNRTITTIDLGGNNIHSK 430 (597)
Q Consensus 351 ~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~ 430 (597)
... ...+++|+.|++++|.++. ++..+ .++|++|++++|.+++. .+..+..+++|++|++++|.++..
T Consensus 164 ~~~-~~~l~~L~~L~l~~n~l~~-----l~~~~--~~~L~~L~l~~n~l~~~----~~~~~~~l~~L~~L~Ls~n~l~~~ 231 (330)
T 1xku_A 164 NGA-FQGMKKLSYIRIADTNITT-----IPQGL--PPSLTELHLDGNKITKV----DAASLKGLNNLAKLGLSFNSISAV 231 (330)
T ss_dssp TTG-GGGCTTCCEEECCSSCCCS-----CCSSC--CTTCSEEECTTSCCCEE----CTGGGTTCTTCCEEECCSSCCCEE
T ss_pred hhh-ccCCCCcCEEECCCCcccc-----CCccc--cccCCEEECCCCcCCcc----CHHHhcCCCCCCEEECCCCcCcee
Confidence 011 1233456666666665554 11111 14555555555555542 122334445555555555555442
Q ss_pred HHHHHHHHhhcCCCcCEEECcCCCCCHHHHHHHHHHHhhCCCcCEEecCCCCCCh
Q 007577 431 GASAIARVLKDNSVITSLDLAYNPIGADGAKALSEVLKFHGNINTLKLGWCQIGA 485 (597)
Q Consensus 431 ~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~ 485 (597)
.. ..+..+++|++|++++|.++. +...+..+++|++|++++|.|+.
T Consensus 232 ~~----~~~~~l~~L~~L~L~~N~l~~-----lp~~l~~l~~L~~L~l~~N~i~~ 277 (330)
T 1xku_A 232 DN----GSLANTPHLRELHLNNNKLVK-----VPGGLADHKYIQVVYLHNNNISA 277 (330)
T ss_dssp CT----TTGGGSTTCCEEECCSSCCSS-----CCTTTTTCSSCCEEECCSSCCCC
T ss_pred Ch----hhccCCCCCCEEECCCCcCcc-----CChhhccCCCcCEEECCCCcCCc
Confidence 21 123334555555555554442 11223334455555555554443
No 54
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.86 E-value=1.1e-20 Score=191.54 Aligned_cols=210 Identities=16% Similarity=0.202 Sum_probs=104.2
Q ss_pred CCCccEEEeccCCCChhhHHHHHHHHhhCCCccEEEcCCCCCChHHHHHHHHHhhcCCCCCEEEccCC-CCChHHHHHHH
Q 007577 273 NSILRVLELNNNMIDYSGFTSLAEALLENSTIRSLHLNGNYGGALGANALAKGLEGNKSLRELHLHGN-SIGDEGIRALM 351 (597)
Q Consensus 273 ~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n-~i~~~~~~~l~ 351 (597)
+++|++|++++|.+++.+ ++..+..+++|++|++++|.+++... ..+..+++|++|++++| .+++.++..+.
T Consensus 92 ~~~L~~L~L~~~~l~~~~---~~~~~~~~~~L~~L~L~~~~l~~~~~----~~l~~~~~L~~L~L~~~~~l~~~~l~~~~ 164 (336)
T 2ast_B 92 PFRVQHMDLSNSVIEVST---LHGILSQCSKLQNLSLEGLRLSDPIV----NTLAKNSNLVRLNLSGCSGFSEFALQTLL 164 (336)
T ss_dssp CBCCCEEECTTCEECHHH---HHHHHTTBCCCSEEECTTCBCCHHHH----HHHTTCTTCSEEECTTCBSCCHHHHHHHH
T ss_pred CCCCCEEEccCCCcCHHH---HHHHHhhCCCCCEEeCcCcccCHHHH----HHHhcCCCCCEEECCCCCCCCHHHHHHHH
Confidence 345555555555544321 23333445555555555555443322 23344555555555555 45554443332
Q ss_pred HhhhcCccccceeeccCC-CCChhHHHHHHHHHHcCC-CCcEEEccCC--CCCcHHHHHHHHHHhcCCCccEEEccCCC-
Q 007577 352 SGLSSRKGKLAVLDIGNN-SISAKGAFHVAEYIKNCK-SLLWINLYMN--DIGDEGAEKIADALKQNRTITTIDLGGNN- 426 (597)
Q Consensus 352 ~~l~~~~~~L~~L~Ls~n-~l~~~~~~~l~~~l~~~~-~L~~L~Ls~n--~l~~~~~~~l~~~l~~~~~L~~L~L~~n~- 426 (597)
. .+++|++|++++| .+++.+ ++..+..++ +|++|++++| .+++.+ +...+..+++|++|++++|.
T Consensus 165 ~----~~~~L~~L~l~~~~~l~~~~---~~~~~~~l~~~L~~L~l~~~~~~~~~~~---l~~~~~~~~~L~~L~l~~~~~ 234 (336)
T 2ast_B 165 S----SCSRLDELNLSWCFDFTEKH---VQVAVAHVSETITQLNLSGYRKNLQKSD---LSTLVRRCPNLVHLDLSDSVM 234 (336)
T ss_dssp H----HCTTCCEEECCCCTTCCHHH---HHHHHHHSCTTCCEEECCSCGGGSCHHH---HHHHHHHCTTCSEEECTTCTT
T ss_pred h----cCCCCCEEcCCCCCCcChHH---HHHHHHhcccCCCEEEeCCCcccCCHHH---HHHHHhhCCCCCEEeCCCCCc
Confidence 2 2235666666665 555432 334445556 6666666666 444432 22233445666666666665
Q ss_pred CChHHHHHHHHHhhcCCCcCEEECcCC-CCCHHHHHHHHHHHhhCCCcCEEecCCCCCChhHHHHHHHHHhcCCCccEEE
Q 007577 427 IHSKGASAIARVLKDNSVITSLDLAYN-PIGADGAKALSEVLKFHGNINTLKLGWCQIGASGAEFVADMLRYNNTISILD 505 (597)
Q Consensus 427 l~~~~~~~l~~~l~~~~~L~~L~Ls~n-~i~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~ 505 (597)
+++..... +..+++|++|++++| .+++.++. .+..+++|++|++++| +++.....+.. +++.|+
T Consensus 235 l~~~~~~~----l~~l~~L~~L~l~~~~~~~~~~~~----~l~~~~~L~~L~l~~~-i~~~~~~~l~~------~l~~L~ 299 (336)
T 2ast_B 235 LKNDCFQE----FFQLNYLQHLSLSRCYDIIPETLL----ELGEIPTLKTLQVFGI-VPDGTLQLLKE------ALPHLQ 299 (336)
T ss_dssp CCGGGGGG----GGGCTTCCEEECTTCTTCCGGGGG----GGGGCTTCCEEECTTS-SCTTCHHHHHH------HSTTSE
T ss_pred CCHHHHHH----HhCCCCCCEeeCCCCCCCCHHHHH----HHhcCCCCCEEeccCc-cCHHHHHHHHh------hCcceE
Confidence 55443322 334466666666666 44444332 2234566666666666 55554444432 244444
Q ss_pred ccCCCCChH
Q 007577 506 LRANGLRDE 514 (597)
Q Consensus 506 l~~n~i~~~ 514 (597)
+++|.+++.
T Consensus 300 l~~n~l~~~ 308 (336)
T 2ast_B 300 INCSHFTTI 308 (336)
T ss_dssp ESCCCSCCT
T ss_pred EecccCccc
Confidence 666666553
No 55
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.85 E-value=7.9e-23 Score=208.81 Aligned_cols=262 Identities=17% Similarity=0.161 Sum_probs=145.5
Q ss_pred CCccEEEeccCCCCHHHHHHHHHHhhhCCCccEEEccCCCCChhHHHHHHHHHhcCCCcCEEEecCCCCChHHHHHHHHH
Q 007577 190 QTAEEVSFAANGITAAGIKAFDGVLQSNIALKTLNLSGNPIGDEGVKCLCDILVDNAGVERLQLSSVDLRDEGAKAIAEL 269 (597)
Q Consensus 190 ~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~~~l~~~~~~~l~~~ 269 (597)
++|++|++++|.++.... ..+..+++|++|++++|.++... ...+..+++|++|++++|.++... ...
T Consensus 52 ~~L~~L~l~~n~i~~~~~----~~~~~l~~L~~L~L~~n~l~~~~----~~~~~~l~~L~~L~Ls~n~l~~~~----~~~ 119 (353)
T 2z80_A 52 EAVKSLDLSNNRITYISN----SDLQRCVNLQALVLTSNGINTIE----EDSFSSLGSLEHLDLSYNYLSNLS----SSW 119 (353)
T ss_dssp TTCCEEECTTSCCCEECT----TTTTTCTTCCEEECTTSCCCEEC----TTTTTTCTTCCEEECCSSCCSSCC----HHH
T ss_pred ccCcEEECCCCcCcccCH----HHhccCCCCCEEECCCCccCccC----HhhcCCCCCCCEEECCCCcCCcCC----HhH
Confidence 356666666665553211 12344556666666666655431 122334566666666666665431 122
Q ss_pred HHcCCCccEEEeccCCCChhhHHHHHH--HHhhCCCccEEEcCCC-CCChHHHHHHHHHhhcCCCCCEEEccCCCCChHH
Q 007577 270 LKNNSILRVLELNNNMIDYSGFTSLAE--ALLENSTIRSLHLNGN-YGGALGANALAKGLEGNKSLRELHLHGNSIGDEG 346 (597)
Q Consensus 270 l~~~~~L~~L~Ls~n~i~~~~~~~l~~--~l~~~~~L~~L~L~~n-~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~ 346 (597)
+..+++|++|++++|+++. ++. .+..+++|++|++++| .++.... ..+..+++|++|++++|.++...
T Consensus 120 ~~~l~~L~~L~L~~n~l~~-----l~~~~~~~~l~~L~~L~l~~n~~~~~~~~----~~~~~l~~L~~L~l~~n~l~~~~ 190 (353)
T 2z80_A 120 FKPLSSLTFLNLLGNPYKT-----LGETSLFSHLTKLQILRVGNMDTFTKIQR----KDFAGLTFLEELEIDASDLQSYE 190 (353)
T ss_dssp HTTCTTCSEEECTTCCCSS-----SCSSCSCTTCTTCCEEEEEESSSCCEECT----TTTTTCCEEEEEEEEETTCCEEC
T ss_pred hCCCccCCEEECCCCCCcc-----cCchhhhccCCCCcEEECCCCccccccCH----HHccCCCCCCEEECCCCCcCccC
Confidence 3445666666666666542 111 2344566666666666 3443322 23455667777777777665431
Q ss_pred HHHHHHhhhcCccccceeeccCCCCChhHHHHHHHHHHcCCCCcEEEccCCCCCcHHHHHHHHHHhcCCCccEEEccCCC
Q 007577 347 IRALMSGLSSRKGKLAVLDIGNNSISAKGAFHVAEYIKNCKSLLWINLYMNDIGDEGAEKIADALKQNRTITTIDLGGNN 426 (597)
Q Consensus 347 ~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~ 426 (597)
...+ ..+++|++|++++|.++.. ....+..+++|++|++++|.+++.....+.. ......++.++++++.
T Consensus 191 ~~~l-----~~l~~L~~L~l~~n~l~~~----~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~-~~~~~~l~~l~L~~~~ 260 (353)
T 2z80_A 191 PKSL-----KSIQNVSHLILHMKQHILL----LEIFVDVTSSVECLELRDTDLDTFHFSELST-GETNSLIKKFTFRNVK 260 (353)
T ss_dssp TTTT-----TTCSEEEEEEEECSCSTTH----HHHHHHHTTTEEEEEEESCBCTTCCCC-------CCCCCCEEEEESCB
T ss_pred HHHH-----hccccCCeecCCCCccccc----hhhhhhhcccccEEECCCCcccccccccccc-ccccchhhcccccccc
Confidence 1111 3345677777777776552 2223445677777777777666532222221 2335677788888888
Q ss_pred CChHHHHHHHHHhhcCCCcCEEECcCCCCCHHHHHHHHHHHhhCCCcCEEecCCCCCChh
Q 007577 427 IHSKGASAIARVLKDNSVITSLDLAYNPIGADGAKALSEVLKFHGNINTLKLGWCQIGAS 486 (597)
Q Consensus 427 l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~ 486 (597)
+++.....++..+..+++|++|++++|.++.... ..+..+++|++|++++|.+...
T Consensus 261 l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l~~i~~----~~~~~l~~L~~L~L~~N~~~~~ 316 (353)
T 2z80_A 261 ITDESLFQVMKLLNQISGLLELEFSRNQLKSVPD----GIFDRLTSLQKIWLHTNPWDCS 316 (353)
T ss_dssp CCHHHHHHHHHHHHTCTTCCEEECCSSCCCCCCT----TTTTTCTTCCEEECCSSCBCCC
T ss_pred ccCcchhhhHHHHhcccCCCEEECCCCCCCccCH----HHHhcCCCCCEEEeeCCCccCc
Confidence 8887777777777777888888888887763211 1124456677777776665543
No 56
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.85 E-value=2e-24 Score=218.75 Aligned_cols=126 Identities=16% Similarity=0.134 Sum_probs=56.7
Q ss_pred CcEEEcCCCCCCHHHHHHHHHHhccCCCccEEEeccCCCCHHHHHHHHHHhhhCCCccEEEccCCCCChhHHHHHHHHHh
Q 007577 164 FSSVDMSGRNFGDEGLFFLAESLGYNQTAEEVSFAANGITAAGIKAFDGVLQSNIALKTLNLSGNPIGDEGVKCLCDILV 243 (597)
Q Consensus 164 L~~L~Ls~~~l~~~~~~~l~~~l~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~ 243 (597)
++.++++++.+... +..+ .++|+.|++++|.++... ...+..+++|++|++++|.++... +..+.
T Consensus 35 l~~l~~~~~~l~~i-----p~~~--~~~l~~L~l~~n~i~~~~----~~~~~~l~~L~~L~L~~n~l~~~~----~~~~~ 99 (332)
T 2ft3_A 35 LRVVQCSDLGLKAV-----PKEI--SPDTTLLDLQNNDISELR----KDDFKGLQHLYALVLVNNKISKIH----EKAFS 99 (332)
T ss_dssp TTEEECCSSCCSSC-----CSCC--CTTCCEEECCSSCCCEEC----TTTTTTCTTCCEEECCSSCCCEEC----GGGST
T ss_pred CCEEECCCCCcccc-----CCCC--CCCCeEEECCCCcCCccC----HhHhhCCCCCcEEECCCCccCccC----HhHhh
Confidence 55566665554421 1111 245566666666554321 122344555566666555555431 12233
Q ss_pred cCCCcCEEEecCCCCChHHHHHHHHHHHcCCCccEEEeccCCCChhhHHHHHHHHhhCCCccEEEcCCCCCC
Q 007577 244 DNAGVERLQLSSVDLRDEGAKAIAELLKNNSILRVLELNNNMIDYSGFTSLAEALLENSTIRSLHLNGNYGG 315 (597)
Q Consensus 244 ~~~~L~~L~Ls~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~i~ 315 (597)
.+++|++|++++|.++.. +..+ .++|++|++++|.++... ...+..+++|++|++++|.++
T Consensus 100 ~l~~L~~L~L~~n~l~~l-----~~~~--~~~L~~L~l~~n~i~~~~----~~~~~~l~~L~~L~l~~n~l~ 160 (332)
T 2ft3_A 100 PLRKLQKLYISKNHLVEI-----PPNL--PSSLVELRIHDNRIRKVP----KGVFSGLRNMNCIEMGGNPLE 160 (332)
T ss_dssp TCTTCCEEECCSSCCCSC-----CSSC--CTTCCEEECCSSCCCCCC----SGGGSSCSSCCEEECCSCCCB
T ss_pred CcCCCCEEECCCCcCCcc-----Cccc--cccCCEEECCCCccCccC----HhHhCCCccCCEEECCCCccc
Confidence 345555555555555431 1111 134555555555553211 112334455555555555443
No 57
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.84 E-value=9.4e-25 Score=221.13 Aligned_cols=293 Identities=15% Similarity=0.121 Sum_probs=182.9
Q ss_pred CccEEEeccCCCCHHHHHHHHHHhhhCCCccEEEccCCCCChhHHHHHHHHHhcCCCcCEEEecCCCCChHHHHHHHHHH
Q 007577 191 TAEEVSFAANGITAAGIKAFDGVLQSNIALKTLNLSGNPIGDEGVKCLCDILVDNAGVERLQLSSVDLRDEGAKAIAELL 270 (597)
Q Consensus 191 ~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~~~l~~~~~~~l~~~l 270 (597)
+++.++++++.++.. +..+ .++|++|++++|.+..... ..+..+++|++|++++|.++.. .+..+
T Consensus 34 ~l~~l~~~~~~l~~i-----p~~~--~~~l~~L~l~~n~i~~~~~----~~~~~l~~L~~L~L~~n~l~~~----~~~~~ 98 (332)
T 2ft3_A 34 HLRVVQCSDLGLKAV-----PKEI--SPDTTLLDLQNNDISELRK----DDFKGLQHLYALVLVNNKISKI----HEKAF 98 (332)
T ss_dssp ETTEEECCSSCCSSC-----CSCC--CTTCCEEECCSSCCCEECT----TTTTTCTTCCEEECCSSCCCEE----CGGGS
T ss_pred cCCEEECCCCCcccc-----CCCC--CCCCeEEECCCCcCCccCH----hHhhCCCCCcEEECCCCccCcc----CHhHh
Confidence 688999999887632 2111 2579999999998876522 3345678999999999988864 23445
Q ss_pred HcCCCccEEEeccCCCChhhHHHHHHHHhhCCCccEEEcCCCCCChHHHHHHHHHhhcCCCCCEEEccCCCCChHHHHHH
Q 007577 271 KNNSILRVLELNNNMIDYSGFTSLAEALLENSTIRSLHLNGNYGGALGANALAKGLEGNKSLRELHLHGNSIGDEGIRAL 350 (597)
Q Consensus 271 ~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l 350 (597)
..+++|++|++++|.++. ++..+ .++|++|++++|.++.... ..+..+++|++|++++|.++..+..
T Consensus 99 ~~l~~L~~L~L~~n~l~~-----l~~~~--~~~L~~L~l~~n~i~~~~~----~~~~~l~~L~~L~l~~n~l~~~~~~-- 165 (332)
T 2ft3_A 99 SPLRKLQKLYISKNHLVE-----IPPNL--PSSLVELRIHDNRIRKVPK----GVFSGLRNMNCIEMGGNPLENSGFE-- 165 (332)
T ss_dssp TTCTTCCEEECCSSCCCS-----CCSSC--CTTCCEEECCSSCCCCCCS----GGGSSCSSCCEEECCSCCCBGGGSC--
T ss_pred hCcCCCCEEECCCCcCCc-----cCccc--cccCCEEECCCCccCccCH----hHhCCCccCCEEECCCCccccCCCC--
Confidence 667889999999998853 22221 2688999999988876543 3466788899999998888642211
Q ss_pred HHhhhcCccccceeeccCCCCChhHHHHHHHHHHcCCCCcEEEccCCCCCcHHHHHHHHHHhcCCCccEEEccCCCCChH
Q 007577 351 MSGLSSRKGKLAVLDIGNNSISAKGAFHVAEYIKNCKSLLWINLYMNDIGDEGAEKIADALKQNRTITTIDLGGNNIHSK 430 (597)
Q Consensus 351 ~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~ 430 (597)
...+ ... +|+.|++++|.++. ++..+ .++|++|++++|.+++. .+..+..+++|++|++++|.++..
T Consensus 166 ~~~~-~~l-~L~~L~l~~n~l~~-----l~~~~--~~~L~~L~l~~n~i~~~----~~~~l~~l~~L~~L~L~~N~l~~~ 232 (332)
T 2ft3_A 166 PGAF-DGL-KLNYLRISEAKLTG-----IPKDL--PETLNELHLDHNKIQAI----ELEDLLRYSKLYRLGLGHNQIRMI 232 (332)
T ss_dssp TTSS-CSC-CCSCCBCCSSBCSS-----CCSSS--CSSCSCCBCCSSCCCCC----CTTSSTTCTTCSCCBCCSSCCCCC
T ss_pred cccc-cCC-ccCEEECcCCCCCc-----cCccc--cCCCCEEECCCCcCCcc----CHHHhcCCCCCCEEECCCCcCCcC
Confidence 1111 223 78888888888776 33222 26788888888877763 223455667788888888877663
Q ss_pred HHHHHHHHhhcCCCcCEEECcCCCCCHHHHHHHHHHHhhCCCcCEEecCCCCCChhHHHHHHHHH--hcCCCccEEEccC
Q 007577 431 GASAIARVLKDNSVITSLDLAYNPIGADGAKALSEVLKFHGNINTLKLGWCQIGASGAEFVADML--RYNNTISILDLRA 508 (597)
Q Consensus 431 ~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l--~~~~~L~~L~l~~ 508 (597)
.. ..+..+++|++|++++|.++. +...+..+++|++|++++|.++..+...+.... ...+.|+.|++++
T Consensus 233 ~~----~~~~~l~~L~~L~L~~N~l~~-----lp~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~l~~L~l~~ 303 (332)
T 2ft3_A 233 EN----GSLSFLPTLRELHLDNNKLSR-----VPAGLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFN 303 (332)
T ss_dssp CT----TGGGGCTTCCEEECCSSCCCB-----CCTTGGGCTTCCEEECCSSCCCBCCTTSSSCSSCCSSSCCBSEEECCS
T ss_pred Ch----hHhhCCCCCCEEECCCCcCee-----cChhhhcCccCCEEECCCCCCCccChhHccccccccccccccceEeec
Confidence 22 234556777777777777763 223345567777777777777655443332210 0124566666666
Q ss_pred CCCChH--HHHHHHHHHhhcCccccEEEccCC
Q 007577 509 NGLRDE--GAKCLAQSFKVVNEALTSIDLAFN 538 (597)
Q Consensus 509 n~i~~~--~~~~l~~~l~~~n~~L~~L~Ls~n 538 (597)
|.+... ....+.. .+.|+.+++++|
T Consensus 304 N~~~~~~~~~~~~~~-----l~~L~~l~l~~n 330 (332)
T 2ft3_A 304 NPVPYWEVQPATFRC-----VTDRLAIQFGNY 330 (332)
T ss_dssp SSSCGGGSCGGGGTT-----BCCSTTEEC---
T ss_pred CcccccccCcccccc-----cchhhhhhcccc
Confidence 665521 1111111 155666666665
No 58
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.84 E-value=7e-23 Score=215.71 Aligned_cols=54 Identities=15% Similarity=0.193 Sum_probs=28.5
Q ss_pred CcCEEecCCCCCChhHHHHHHHHHhcCCCccEEEccCCCCChHHHHHHHHHHhhcCccccEEEccCCCCCh
Q 007577 472 NINTLKLGWCQIGASGAEFVADMLRYNNTISILDLRANGLRDEGAKCLAQSFKVVNEALTSIDLAFNEIRD 542 (597)
Q Consensus 472 ~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~n~i~~~~~~~l~~~l~~~n~~L~~L~Ls~n~i~~ 542 (597)
+|++|++++|+++.... .+++|++|++++|.++.... . .++|++|++++|.++.
T Consensus 318 ~L~~L~Ls~N~l~~lp~--------~~~~L~~L~L~~N~l~~lp~-----~----l~~L~~L~L~~N~l~~ 371 (454)
T 1jl5_A 318 SLEELNVSNNKLIELPA--------LPPRLERLIASFNHLAEVPE-----L----PQNLKQLHVEYNPLRE 371 (454)
T ss_dssp TCCEEECCSSCCSCCCC--------CCTTCCEEECCSSCCSCCCC-----C----CTTCCEEECCSSCCSS
T ss_pred cCCEEECCCCccccccc--------cCCcCCEEECCCCccccccc-----h----hhhccEEECCCCCCCc
Confidence 56666666666543211 13566666666666553211 0 1456666666666654
No 59
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.82 E-value=3.5e-21 Score=202.77 Aligned_cols=315 Identities=16% Similarity=0.187 Sum_probs=187.9
Q ss_pred cCCCcEEEcCCCCCCHHHHHHHHHHhccCCCccEEEeccCCCCHHHHHHHHHHhhhCCCccEEEccCCCCChhHHHHHHH
Q 007577 161 LRAFSSVDMSGRNFGDEGLFFLAESLGYNQTAEEVSFAANGITAAGIKAFDGVLQSNIALKTLNLSGNPIGDEGVKCLCD 240 (597)
Q Consensus 161 ~~~L~~L~Ls~~~l~~~~~~~l~~~l~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~ 240 (597)
.++|++|++++|.+... +. ..++|++|++++|.++.. + .+..+++|++|++++|+++.. +.
T Consensus 110 ~~~L~~L~l~~n~l~~l-----~~---~~~~L~~L~L~~n~l~~l-----p-~~~~l~~L~~L~l~~N~l~~l-----p~ 170 (454)
T 1jl5_A 110 PQSLKSLLVDNNNLKAL-----SD---LPPLLEYLGVSNNQLEKL-----P-ELQNSSFLKIIDVDNNSLKKL-----PD 170 (454)
T ss_dssp CTTCCEEECCSSCCSCC-----CS---CCTTCCEEECCSSCCSSC-----C-CCTTCTTCCEEECCSSCCSCC-----CC
T ss_pred cCCCcEEECCCCccCcc-----cC---CCCCCCEEECcCCCCCCC-----c-ccCCCCCCCEEECCCCcCccc-----CC
Confidence 36788888888877641 11 125888888888887642 2 256778888888888887642 11
Q ss_pred HHhcCCCcCEEEecCCCCChHHHHHHHHHHHcCCCccEEEeccCCCChhhHHHHHHHHhhCCCccEEEcCCCCCChHHHH
Q 007577 241 ILVDNAGVERLQLSSVDLRDEGAKAIAELLKNNSILRVLELNNNMIDYSGFTSLAEALLENSTIRSLHLNGNYGGALGAN 320 (597)
Q Consensus 241 ~l~~~~~L~~L~Ls~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~ 320 (597)
. ..+|++|++++|.++.. + .+..+++|++|++++|+++.- +. ..++|++|++++|.++..+
T Consensus 171 ~---~~~L~~L~L~~n~l~~l-----~-~~~~l~~L~~L~l~~N~l~~l-----~~---~~~~L~~L~l~~n~l~~lp-- 231 (454)
T 1jl5_A 171 L---PPSLEFIAAGNNQLEEL-----P-ELQNLPFLTAIYADNNSLKKL-----PD---LPLSLESIVAGNNILEELP-- 231 (454)
T ss_dssp C---CTTCCEEECCSSCCSSC-----C-CCTTCTTCCEEECCSSCCSSC-----CC---CCTTCCEEECCSSCCSSCC--
T ss_pred C---cccccEEECcCCcCCcC-----c-cccCCCCCCEEECCCCcCCcC-----CC---CcCcccEEECcCCcCCccc--
Confidence 1 35788888888888763 2 256678888888888887531 11 1358889999988877443
Q ss_pred HHHHHhhcCCCCCEEEccCCCCChHHHHHHHHhhhcCccccceeeccCCCCChhHHHHHHHHHHcCCCCcEEEccCCCCC
Q 007577 321 ALAKGLEGNKSLRELHLHGNSIGDEGIRALMSGLSSRKGKLAVLDIGNNSISAKGAFHVAEYIKNCKSLLWINLYMNDIG 400 (597)
Q Consensus 321 ~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~ 400 (597)
.+..+++|++|++++|.++.. . ...++|+.|++++|.++. ++. ..++|++|++++|.++
T Consensus 232 ----~~~~l~~L~~L~l~~N~l~~l-----~----~~~~~L~~L~l~~N~l~~-----l~~---~~~~L~~L~ls~N~l~ 290 (454)
T 1jl5_A 232 ----ELQNLPFLTTIYADNNLLKTL-----P----DLPPSLEALNVRDNYLTD-----LPE---LPQSLTFLDVSENIFS 290 (454)
T ss_dssp ----CCTTCTTCCEEECCSSCCSSC-----C----SCCTTCCEEECCSSCCSC-----CCC---CCTTCCEEECCSSCCS
T ss_pred ----ccCCCCCCCEEECCCCcCCcc-----c----ccccccCEEECCCCcccc-----cCc---ccCcCCEEECcCCccC
Confidence 256788899999999987652 1 122479999999998876 222 2478999999999887
Q ss_pred cHHHHHHHHHHhcCCCccEEEccCCCCChHHHHHHHHHhhcC-CCcCEEECcCCCCCHHHHHHHHHHHhhCCCcCEEecC
Q 007577 401 DEGAEKIADALKQNRTITTIDLGGNNIHSKGASAIARVLKDN-SVITSLDLAYNPIGADGAKALSEVLKFHGNINTLKLG 479 (597)
Q Consensus 401 ~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~-~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~L~ 479 (597)
+. .. -.++|++|++++|.++. +... ++|++|++++|+++... . .+++|++|+++
T Consensus 291 ~l-----~~---~~~~L~~L~l~~N~l~~---------i~~~~~~L~~L~Ls~N~l~~lp-----~---~~~~L~~L~L~ 345 (454)
T 1jl5_A 291 GL-----SE---LPPNLYYLNASSNEIRS---------LCDLPPSLEELNVSNNKLIELP-----A---LPPRLERLIAS 345 (454)
T ss_dssp EE-----SC---CCTTCCEEECCSSCCSE---------ECCCCTTCCEEECCSSCCSCCC-----C---CCTTCCEEECC
T ss_pred cc-----cC---cCCcCCEEECcCCcCCc---------ccCCcCcCCEEECCCCcccccc-----c---cCCcCCEEECC
Confidence 62 11 12689999999999886 2233 58999999999887521 1 24799999999
Q ss_pred CCCCChhHHHHHHHHHhcCCCccEEEccCCCCCh--HHHHHHHHH--------HhhcCccccEEEccCCCCChHHHHHHH
Q 007577 480 WCQIGASGAEFVADMLRYNNTISILDLRANGLRD--EGAKCLAQS--------FKVVNEALTSIDLAFNEIRDDGAFAIA 549 (597)
Q Consensus 480 ~n~i~~~~~~~l~~~l~~~~~L~~L~l~~n~i~~--~~~~~l~~~--------l~~~n~~L~~L~Ls~n~i~~~~~~~l~ 549 (597)
+|+++.... .+++|++|++++|.++. ..+..+... +....++|+.|++++|.++..+ .+-
T Consensus 346 ~N~l~~lp~--------~l~~L~~L~L~~N~l~~l~~ip~~l~~L~~n~~~~~i~~~~~~L~~L~ls~N~l~~~~--~iP 415 (454)
T 1jl5_A 346 FNHLAEVPE--------LPQNLKQLHVEYNPLREFPDIPESVEDLRMNSHLAEVPELPQNLKQLHVETNPLREFP--DIP 415 (454)
T ss_dssp SSCCSCCCC--------CCTTCCEEECCSSCCSSCCCCCTTCCEEECCC-------------------------------
T ss_pred CCccccccc--------hhhhccEEECCCCCCCcCCCChHHHHhhhhcccccccccccCcCCEEECCCCcCCccc--cch
Confidence 999875432 25899999999998876 211111000 0000145888888888877521 121
Q ss_pred HHHHhCCCCceeEEEcccCccchhhHHH
Q 007577 550 QALKANEDVAVTSLNLANNFLTKFGQSA 577 (597)
Q Consensus 550 ~~l~~~~~~~L~~L~L~~N~i~~~~~~~ 577 (597)
. +++.|.+.+|.+.......
T Consensus 416 ~--------sl~~L~~~~~~~~~~~~~~ 435 (454)
T 1jl5_A 416 E--------SVEDLRMNSERVVDPYEFA 435 (454)
T ss_dssp ----------------------------
T ss_pred h--------hHhheeCcCcccCCccccC
Confidence 1 2677777777776554433
No 60
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.81 E-value=1e-20 Score=205.36 Aligned_cols=285 Identities=16% Similarity=0.141 Sum_probs=205.6
Q ss_pred CCCcEEEcCCCCCCHHHHHHHHHHhccCCCccEEEeccCCCCHHHHHHHHHHhhhCCCccEEEccCCCCChhHHHHHHHH
Q 007577 162 RAFSSVDMSGRNFGDEGLFFLAESLGYNQTAEEVSFAANGITAAGIKAFDGVLQSNIALKTLNLSGNPIGDEGVKCLCDI 241 (597)
Q Consensus 162 ~~L~~L~Ls~~~l~~~~~~~l~~~l~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~ 241 (597)
.++++|++++|.++. ++..+. ++|+.|++++|.|+.. +. .+++|++|+|++|+++... .
T Consensus 40 ~~l~~L~ls~n~L~~-----lp~~l~--~~L~~L~L~~N~l~~l-----p~---~l~~L~~L~Ls~N~l~~lp-----~- 98 (622)
T 3g06_A 40 NGNAVLNVGESGLTT-----LPDCLP--AHITTLVIPDNNLTSL-----PA---LPPELRTLEVSGNQLTSLP-----V- 98 (622)
T ss_dssp HCCCEEECCSSCCSC-----CCSCCC--TTCSEEEECSCCCSCC-----CC---CCTTCCEEEECSCCCSCCC-----C-
T ss_pred CCCcEEEecCCCcCc-----cChhhC--CCCcEEEecCCCCCCC-----CC---cCCCCCEEEcCCCcCCcCC-----C-
Confidence 569999999998874 333332 7899999999998742 21 4578999999999987532 2
Q ss_pred HhcCCCcCEEEecCCCCChHHHHHHHHHHHcCCCccEEEeccCCCChhhHHHHHHHHhhCCCccEEEcCCCCCChHHHHH
Q 007577 242 LVDNAGVERLQLSSVDLRDEGAKAIAELLKNNSILRVLELNNNMIDYSGFTSLAEALLENSTIRSLHLNGNYGGALGANA 321 (597)
Q Consensus 242 l~~~~~L~~L~Ls~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~ 321 (597)
.+++|++|++++|.++.. +. ..++|++|++++|+++. ++. .+++|++|++++|.++..+.
T Consensus 99 --~l~~L~~L~Ls~N~l~~l-----~~---~l~~L~~L~L~~N~l~~-----lp~---~l~~L~~L~Ls~N~l~~l~~-- 158 (622)
T 3g06_A 99 --LPPGLLELSIFSNPLTHL-----PA---LPSGLCKLWIFGNQLTS-----LPV---LPPGLQELSVSDNQLASLPA-- 158 (622)
T ss_dssp --CCTTCCEEEECSCCCCCC-----CC---CCTTCCEEECCSSCCSC-----CCC---CCTTCCEEECCSSCCSCCCC--
T ss_pred --CCCCCCEEECcCCcCCCC-----CC---CCCCcCEEECCCCCCCc-----CCC---CCCCCCEEECcCCcCCCcCC--
Confidence 468999999999998863 22 35789999999998864 222 24789999999998875431
Q ss_pred HHHHhhcCCCCCEEEccCCCCChHHHHHHHHhhhcCccccceeeccCCCCChhHHHHHHHHHHcCCCCcEEEccCCCCCc
Q 007577 322 LAKGLEGNKSLRELHLHGNSIGDEGIRALMSGLSSRKGKLAVLDIGNNSISAKGAFHVAEYIKNCKSLLWINLYMNDIGD 401 (597)
Q Consensus 322 l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~ 401 (597)
..++|+.|++++|.++... ...++|+.|++++|.++. ++. ..++|+.|++++|.++.
T Consensus 159 ------~~~~L~~L~L~~N~l~~l~---------~~~~~L~~L~Ls~N~l~~-----l~~---~~~~L~~L~L~~N~l~~ 215 (622)
T 3g06_A 159 ------LPSELCKLWAYNNQLTSLP---------MLPSGLQELSVSDNQLAS-----LPT---LPSELYKLWAYNNRLTS 215 (622)
T ss_dssp ------CCTTCCEEECCSSCCSCCC---------CCCTTCCEEECCSSCCSC-----CCC---CCTTCCEEECCSSCCSS
T ss_pred ------ccCCCCEEECCCCCCCCCc---------ccCCCCcEEECCCCCCCC-----CCC---ccchhhEEECcCCcccc
Confidence 3568999999999887621 234589999999998876 322 34789999999998875
Q ss_pred HHHHHHHHHHhcCCCccEEEccCCCCChHHHHHHHHHhhcCCCcCEEECcCCCCCHHHHHHHHHHHhhCCCcCEEecCCC
Q 007577 402 EGAEKIADALKQNRTITTIDLGGNNIHSKGASAIARVLKDNSVITSLDLAYNPIGADGAKALSEVLKFHGNINTLKLGWC 481 (597)
Q Consensus 402 ~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n 481 (597)
++. ..++|++|++++|.|+... ..+++|++|++++|.|+.... .+++|++|++++|
T Consensus 216 -----l~~---~~~~L~~L~Ls~N~L~~lp--------~~l~~L~~L~Ls~N~L~~lp~--------~~~~L~~L~Ls~N 271 (622)
T 3g06_A 216 -----LPA---LPSGLKELIVSGNRLTSLP--------VLPSELKELMVSGNRLTSLPM--------LPSGLLSLSVYRN 271 (622)
T ss_dssp -----CCC---CCTTCCEEECCSSCCSCCC--------CCCTTCCEEECCSSCCSCCCC--------CCTTCCEEECCSS
T ss_pred -----cCC---CCCCCCEEEccCCccCcCC--------CCCCcCcEEECCCCCCCcCCc--------ccccCcEEeCCCC
Confidence 221 2478999999999888622 345889999999998874321 4578999999999
Q ss_pred CCChhHHHHHHHHHhcCCCccEEEccCCCCChHHHHHHHHHHhh--cCccccEEEccCCC
Q 007577 482 QIGASGAEFVADMLRYNNTISILDLRANGLRDEGAKCLAQSFKV--VNEALTSIDLAFNE 539 (597)
Q Consensus 482 ~i~~~~~~~l~~~l~~~~~L~~L~l~~n~i~~~~~~~l~~~l~~--~n~~L~~L~Ls~n~ 539 (597)
+|+.. ...+..+++|+.|++++|.+.+..+..+...... ....+..++++++.
T Consensus 272 ~L~~l-----p~~l~~l~~L~~L~L~~N~l~~~~~~~l~~L~~~~~~~g~~~~~~~~~~~ 326 (622)
T 3g06_A 272 QLTRL-----PESLIHLSSETTVNLEGNPLSERTLQALREITSAPGYSGPIIRFDMAGAS 326 (622)
T ss_dssp CCCSC-----CGGGGGSCTTCEEECCSCCCCHHHHHHHHHHHHSTTCCSCEEECCSCCC-
T ss_pred CCCcC-----CHHHhhccccCEEEecCCCCCCcCHHHHHhcccccccCCCceeeecCCCc
Confidence 88743 2335667899999999999988877777655321 11234455555543
No 61
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.81 E-value=1.3e-20 Score=204.68 Aligned_cols=285 Identities=15% Similarity=0.106 Sum_probs=203.2
Q ss_pred CCccEEEeccCCCCHHHHHHHHHHhhhCCCccEEEccCCCCChhHHHHHHHHHhcCCCcCEEEecCCCCChHHHHHHHHH
Q 007577 190 QTAEEVSFAANGITAAGIKAFDGVLQSNIALKTLNLSGNPIGDEGVKCLCDILVDNAGVERLQLSSVDLRDEGAKAIAEL 269 (597)
Q Consensus 190 ~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~~~l~~~~~~~l~~~ 269 (597)
.+++.|++++|.++.. +..+. ++|++|++++|.++... . .+++|++|+|++|+++.. +.
T Consensus 40 ~~l~~L~ls~n~L~~l-----p~~l~--~~L~~L~L~~N~l~~lp-----~---~l~~L~~L~Ls~N~l~~l-----p~- 98 (622)
T 3g06_A 40 NGNAVLNVGESGLTTL-----PDCLP--AHITTLVIPDNNLTSLP-----A---LPPELRTLEVSGNQLTSL-----PV- 98 (622)
T ss_dssp HCCCEEECCSSCCSCC-----CSCCC--TTCSEEEECSCCCSCCC-----C---CCTTCCEEEECSCCCSCC-----CC-
T ss_pred CCCcEEEecCCCcCcc-----ChhhC--CCCcEEEecCCCCCCCC-----C---cCCCCCEEEcCCCcCCcC-----CC-
Confidence 3688999999987632 22222 67999999999887532 2 358899999999988763 22
Q ss_pred HHcCCCccEEEeccCCCChhhHHHHHHHHhhCCCccEEEcCCCCCChHHHHHHHHHhhcCCCCCEEEccCCCCChHHHHH
Q 007577 270 LKNNSILRVLELNNNMIDYSGFTSLAEALLENSTIRSLHLNGNYGGALGANALAKGLEGNKSLRELHLHGNSIGDEGIRA 349 (597)
Q Consensus 270 l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~ 349 (597)
.+++|++|++++|.++.- +. .+++|+.|++++|.++..+. .+++|++|++++|.++..
T Consensus 99 --~l~~L~~L~Ls~N~l~~l-----~~---~l~~L~~L~L~~N~l~~lp~--------~l~~L~~L~Ls~N~l~~l---- 156 (622)
T 3g06_A 99 --LPPGLLELSIFSNPLTHL-----PA---LPSGLCKLWIFGNQLTSLPV--------LPPGLQELSVSDNQLASL---- 156 (622)
T ss_dssp --CCTTCCEEEECSCCCCCC-----CC---CCTTCCEEECCSSCCSCCCC--------CCTTCCEEECCSSCCSCC----
T ss_pred --CCCCCCEEECcCCcCCCC-----CC---CCCCcCEEECCCCCCCcCCC--------CCCCCCEEECcCCcCCCc----
Confidence 458899999999988642 21 46789999999998876432 347899999999988652
Q ss_pred HHHhhhcCccccceeeccCCCCChhHHHHHHHHHHcCCCCcEEEccCCCCCcHHHHHHHHHHhcCCCccEEEccCCCCCh
Q 007577 350 LMSGLSSRKGKLAVLDIGNNSISAKGAFHVAEYIKNCKSLLWINLYMNDIGDEGAEKIADALKQNRTITTIDLGGNNIHS 429 (597)
Q Consensus 350 l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~ 429 (597)
. ....+|+.|++++|.++. ++ ..+++|+.|++++|.++. ++. ..++|+.|++++|.++.
T Consensus 157 -~----~~~~~L~~L~L~~N~l~~-----l~---~~~~~L~~L~Ls~N~l~~-----l~~---~~~~L~~L~L~~N~l~~ 215 (622)
T 3g06_A 157 -P----ALPSELCKLWAYNNQLTS-----LP---MLPSGLQELSVSDNQLAS-----LPT---LPSELYKLWAYNNRLTS 215 (622)
T ss_dssp -C----CCCTTCCEEECCSSCCSC-----CC---CCCTTCCEEECCSSCCSC-----CCC---CCTTCCEEECCSSCCSS
T ss_pred -C----CccCCCCEEECCCCCCCC-----Cc---ccCCCCcEEECCCCCCCC-----CCC---ccchhhEEECcCCcccc
Confidence 1 123479999999998887 33 456889999999998875 221 24789999999998876
Q ss_pred HHHHHHHHHhhcCCCcCEEECcCCCCCHHHHHHHHHHHhhCCCcCEEecCCCCCChhHHHHHHHHHhcCCCccEEEccCC
Q 007577 430 KGASAIARVLKDNSVITSLDLAYNPIGADGAKALSEVLKFHGNINTLKLGWCQIGASGAEFVADMLRYNNTISILDLRAN 509 (597)
Q Consensus 430 ~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~n 509 (597)
. .. ..++|++|++++|.++... ..+++|++|++++|.|+.... .+++|+.|++++|
T Consensus 216 l-----~~---~~~~L~~L~Ls~N~L~~lp--------~~l~~L~~L~Ls~N~L~~lp~--------~~~~L~~L~Ls~N 271 (622)
T 3g06_A 216 L-----PA---LPSGLKELIVSGNRLTSLP--------VLPSELKELMVSGNRLTSLPM--------LPSGLLSLSVYRN 271 (622)
T ss_dssp C-----CC---CCTTCCEEECCSSCCSCCC--------CCCTTCCEEECCSSCCSCCCC--------CCTTCCEEECCSS
T ss_pred c-----CC---CCCCCCEEEccCCccCcCC--------CCCCcCcEEECCCCCCCcCCc--------ccccCcEEeCCCC
Confidence 2 11 2378999999999887532 345789999999998875432 3578999999999
Q ss_pred CCChHHHHHHHHHHhhcCccccEEEccCCCCChHHHHHHHHHHHhCCC-CceeEEEcccC
Q 007577 510 GLRDEGAKCLAQSFKVVNEALTSIDLAFNEIRDDGAFAIAQALKANED-VAVTSLNLANN 568 (597)
Q Consensus 510 ~i~~~~~~~l~~~l~~~n~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~-~~L~~L~L~~N 568 (597)
.|+.. +..+..+ ++|+.|+|++|.++...+..+......+.. ..+..++++++
T Consensus 272 ~L~~l-p~~l~~l-----~~L~~L~L~~N~l~~~~~~~l~~L~~~~~~~g~~~~~~~~~~ 325 (622)
T 3g06_A 272 QLTRL-PESLIHL-----SSETTVNLEGNPLSERTLQALREITSAPGYSGPIIRFDMAGA 325 (622)
T ss_dssp CCCSC-CGGGGGS-----CTTCEEECCSCCCCHHHHHHHHHHHHSTTCCSCEEECCSCCC
T ss_pred CCCcC-CHHHhhc-----cccCEEEecCCCCCCcCHHHHHhcccccccCCCceeeecCCC
Confidence 88853 2223332 779999999999998888877765443211 12455555543
No 62
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.81 E-value=8.3e-22 Score=197.94 Aligned_cols=173 Identities=23% Similarity=0.255 Sum_probs=82.2
Q ss_pred hCCCccEEEcCCCCCChHHHHHHHHHhhcCCCCCEEEccCCCCChHHHHHHHHhhhcCccccceeeccCCCCChhHHHHH
Q 007577 300 ENSTIRSLHLNGNYGGALGANALAKGLEGNKSLRELHLHGNSIGDEGIRALMSGLSSRKGKLAVLDIGNNSISAKGAFHV 379 (597)
Q Consensus 300 ~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l 379 (597)
.+++|++|++++|.++.. ...++|++|++++|.+++... ...++|+.|++++|.++.. .
T Consensus 78 ~l~~L~~L~Ls~n~l~~l---------~~~~~L~~L~l~~n~l~~~~~--------~~~~~L~~L~l~~N~l~~~----~ 136 (317)
T 3o53_A 78 SLSTLRTLDLNNNYVQEL---------LVGPSIETLHAANNNISRVSC--------SRGQGKKNIYLANNKITML----R 136 (317)
T ss_dssp TCTTCCEEECCSSEEEEE---------EECTTCCEEECCSSCCSEEEE--------CCCSSCEEEECCSSCCCSG----G
T ss_pred hcCCCCEEECcCCccccc---------cCCCCcCEEECCCCccCCcCc--------cccCCCCEEECCCCCCCCc----c
Confidence 344555555555544321 123455555555555543211 1223455555555555541 1
Q ss_pred HHHHHcCCCCcEEEccCCCCCcHHHHHHHHHHhcCCCccEEEccCCCCChHHHHHHHHHhhcCCCcCEEECcCCCCCHHH
Q 007577 380 AEYIKNCKSLLWINLYMNDIGDEGAEKIADALKQNRTITTIDLGGNNIHSKGASAIARVLKDNSVITSLDLAYNPIGADG 459 (597)
Q Consensus 380 ~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~ 459 (597)
+..+..+++|++|++++|.+++.....+ ...+++|++|++++|.|+... ....+++|++|++++|.++...
T Consensus 137 ~~~~~~l~~L~~L~Ls~N~l~~~~~~~~---~~~l~~L~~L~L~~N~l~~~~------~~~~l~~L~~L~Ls~N~l~~l~ 207 (317)
T 3o53_A 137 DLDEGCRSRVQYLDLKLNEIDTVNFAEL---AASSDTLEHLNLQYNFIYDVK------GQVVFAKLKTLDLSSNKLAFMG 207 (317)
T ss_dssp GBCTGGGSSEEEEECTTSCCCEEEGGGG---GGGTTTCCEEECTTSCCCEEE------CCCCCTTCCEEECCSSCCCEEC
T ss_pred chhhhccCCCCEEECCCCCCCcccHHHH---hhccCcCCEEECCCCcCcccc------cccccccCCEEECCCCcCCcch
Confidence 2234445556666666665554311111 113455666666666555421 1112455666666666555321
Q ss_pred HHHHHHHHhhCCCcCEEecCCCCCChhHHHHHHHHHhcCCCccEEEccCCCCC
Q 007577 460 AKALSEVLKFHGNINTLKLGWCQIGASGAEFVADMLRYNNTISILDLRANGLR 512 (597)
Q Consensus 460 ~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~n~i~ 512 (597)
. .+..+++|++|++++|.++... ..+..+++|+.|++++|.+.
T Consensus 208 ~-----~~~~l~~L~~L~L~~N~l~~l~-----~~~~~l~~L~~L~l~~N~~~ 250 (317)
T 3o53_A 208 P-----EFQSAAGVTWISLRNNKLVLIE-----KALRFSQNLEHFDLRGNGFH 250 (317)
T ss_dssp G-----GGGGGTTCSEEECTTSCCCEEC-----TTCCCCTTCCEEECTTCCCB
T ss_pred h-----hhcccCcccEEECcCCcccchh-----hHhhcCCCCCEEEccCCCcc
Confidence 1 1333456666666666655321 12344456666666666665
No 63
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.81 E-value=6.9e-22 Score=198.54 Aligned_cols=14 Identities=43% Similarity=0.453 Sum_probs=5.9
Q ss_pred CCCccEEEccCCCC
Q 007577 217 NIALKTLNLSGNPI 230 (597)
Q Consensus 217 ~~~L~~L~Ls~n~l 230 (597)
+++|++|++++|.+
T Consensus 57 l~~L~~L~Ls~n~l 70 (317)
T 3o53_A 57 FTKLELLNLSSNVL 70 (317)
T ss_dssp CTTCCEEECTTSCC
T ss_pred CCcCCEEECCCCcC
Confidence 34444444444444
No 64
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.80 E-value=2.5e-23 Score=208.59 Aligned_cols=250 Identities=14% Similarity=0.186 Sum_probs=119.8
Q ss_pred CCCcEEEcCCCCCCH--HHHHHHHHHhccCCCccEEEecc-CCCCHHHHHHHHHHhhhCCCccEEEccCCCCChhHHHHH
Q 007577 162 RAFSSVDMSGRNFGD--EGLFFLAESLGYNQTAEEVSFAA-NGITAAGIKAFDGVLQSNIALKTLNLSGNPIGDEGVKCL 238 (597)
Q Consensus 162 ~~L~~L~Ls~~~l~~--~~~~~l~~~l~~~~~L~~L~L~~-~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l 238 (597)
.++++|+|++|.+.. . ++..+..+++|+.|++++ |.++.. ++..+..+++|++|++++|.+... +
T Consensus 50 ~~l~~L~L~~~~l~~~~~----~~~~l~~l~~L~~L~L~~~n~l~~~----~p~~l~~l~~L~~L~Ls~n~l~~~----~ 117 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYP----IPSSLANLPYLNFLYIGGINNLVGP----IPPAIAKLTQLHYLYITHTNVSGA----I 117 (313)
T ss_dssp CCEEEEEEECCCCSSCEE----CCGGGGGCTTCSEEEEEEETTEESC----CCGGGGGCTTCSEEEEEEECCEEE----C
T ss_pred ceEEEEECCCCCccCCcc----cChhHhCCCCCCeeeCCCCCccccc----CChhHhcCCCCCEEECcCCeeCCc----C
Confidence 457777777776653 2 334556666666666663 544321 223344556666666666665432 2
Q ss_pred HHHHhcCCCcCEEEecCCCCChHHHHHHHHHHHcCCCccEEEeccCCCChhhHHHHHHHHhhCCCccEEEcCCCCCChHH
Q 007577 239 CDILVDNAGVERLQLSSVDLRDEGAKAIAELLKNNSILRVLELNNNMIDYSGFTSLAEALLENSTIRSLHLNGNYGGALG 318 (597)
Q Consensus 239 ~~~l~~~~~L~~L~Ls~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~ 318 (597)
+..+..+++|++|++++|.++.. ++..+..+++|++|++++|++++. ++..+..++
T Consensus 118 p~~~~~l~~L~~L~Ls~N~l~~~----~p~~~~~l~~L~~L~L~~N~l~~~----~p~~l~~l~---------------- 173 (313)
T 1ogq_A 118 PDFLSQIKTLVTLDFSYNALSGT----LPPSISSLPNLVGITFDGNRISGA----IPDSYGSFS---------------- 173 (313)
T ss_dssp CGGGGGCTTCCEEECCSSEEESC----CCGGGGGCTTCCEEECCSSCCEEE----CCGGGGCCC----------------
T ss_pred CHHHhCCCCCCEEeCCCCccCCc----CChHHhcCCCCCeEECcCCcccCc----CCHHHhhhh----------------
Confidence 23334455566666665555432 222333445555555555555321 122233333
Q ss_pred HHHHHHHhhcCCCCCEEEccCCCCChHHHHHHHHhhhcCccccceeeccCCCCChhHHHHHHHHHHcCCCCcEEEccCCC
Q 007577 319 ANALAKGLEGNKSLRELHLHGNSIGDEGIRALMSGLSSRKGKLAVLDIGNNSISAKGAFHVAEYIKNCKSLLWINLYMND 398 (597)
Q Consensus 319 ~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~ 398 (597)
+.|++|++++|.++.... ..+ ... .|+.|++++|.++.. ++..+..+++|++|+|++|.
T Consensus 174 -----------~~L~~L~L~~N~l~~~~~----~~~-~~l-~L~~L~Ls~N~l~~~----~~~~~~~l~~L~~L~L~~N~ 232 (313)
T 1ogq_A 174 -----------KLFTSMTISRNRLTGKIP----PTF-ANL-NLAFVDLSRNMLEGD----ASVLFGSDKNTQKIHLAKNS 232 (313)
T ss_dssp -----------TTCCEEECCSSEEEEECC----GGG-GGC-CCSEEECCSSEEEEC----CGGGCCTTSCCSEEECCSSE
T ss_pred -----------hcCcEEECcCCeeeccCC----hHH-hCC-cccEEECcCCcccCc----CCHHHhcCCCCCEEECCCCc
Confidence 045555555554432111 111 111 255555555554431 23334455555566665555
Q ss_pred CCcHHHHHHHHHHhcCCCccEEEccCCCCChHHHHHHHHHhhcCCCcCEEECcCCCCCHHHHHHHHHHHhhCCCcCEEec
Q 007577 399 IGDEGAEKIADALKQNRTITTIDLGGNNIHSKGASAIARVLKDNSVITSLDLAYNPIGADGAKALSEVLKFHGNINTLKL 478 (597)
Q Consensus 399 l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~L 478 (597)
++.. ++ .+..+++|++|++++|.|+.. ++..+..+++|++|++++|++++... .. ..+++|+.|++
T Consensus 233 l~~~----~~-~~~~l~~L~~L~Ls~N~l~~~----~p~~l~~l~~L~~L~Ls~N~l~~~ip----~~-~~l~~L~~l~l 298 (313)
T 1ogq_A 233 LAFD----LG-KVGLSKNLNGLDLRNNRIYGT----LPQGLTQLKFLHSLNVSFNNLCGEIP----QG-GNLQRFDVSAY 298 (313)
T ss_dssp ECCB----GG-GCCCCTTCCEEECCSSCCEEC----CCGGGGGCTTCCEEECCSSEEEEECC----CS-TTGGGSCGGGT
T ss_pred eeee----cC-cccccCCCCEEECcCCcccCc----CChHHhcCcCCCEEECcCCcccccCC----CC-ccccccChHHh
Confidence 5432 11 133445566666666655532 22334445666666666665543211 11 23355666666
Q ss_pred CCCC
Q 007577 479 GWCQ 482 (597)
Q Consensus 479 ~~n~ 482 (597)
++|.
T Consensus 299 ~~N~ 302 (313)
T 1ogq_A 299 ANNK 302 (313)
T ss_dssp CSSS
T ss_pred cCCC
Confidence 6665
No 65
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.80 E-value=5.2e-23 Score=206.25 Aligned_cols=208 Identities=15% Similarity=0.186 Sum_probs=107.2
Q ss_pred hcCCCcCEEEecC-CCCChHHHHHHHHHHHcCCCccEEEeccCCCChhhHHHHHHHHhhCCCccEEEcCCCCCChHHHHH
Q 007577 243 VDNAGVERLQLSS-VDLRDEGAKAIAELLKNNSILRVLELNNNMIDYSGFTSLAEALLENSTIRSLHLNGNYGGALGANA 321 (597)
Q Consensus 243 ~~~~~L~~L~Ls~-~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~ 321 (597)
..+++|++|++++ |.++.. ++..+.++++|++|++++|.++. .++..+..+++|++|++++|.++...
T Consensus 73 ~~l~~L~~L~L~~~n~l~~~----~p~~l~~l~~L~~L~Ls~n~l~~----~~p~~~~~l~~L~~L~Ls~N~l~~~~--- 141 (313)
T 1ogq_A 73 ANLPYLNFLYIGGINNLVGP----IPPAIAKLTQLHYLYITHTNVSG----AIPDFLSQIKTLVTLDFSYNALSGTL--- 141 (313)
T ss_dssp GGCTTCSEEEEEEETTEESC----CCGGGGGCTTCSEEEEEEECCEE----ECCGGGGGCTTCCEEECCSSEEESCC---
T ss_pred hCCCCCCeeeCCCCCccccc----CChhHhcCCCCCEEECcCCeeCC----cCCHHHhCCCCCCEEeCCCCccCCcC---
Confidence 3345555555552 444322 22233444566666666665542 12333445566666666666544211
Q ss_pred HHHHhhcCCCCCEEEccCCCCChHHHHHHHHhhhcCccccceeeccCCCCChhHHHHHHHHHHcCCCCcEEEccCCCCCc
Q 007577 322 LAKGLEGNKSLRELHLHGNSIGDEGIRALMSGLSSRKGKLAVLDIGNNSISAKGAFHVAEYIKNCKSLLWINLYMNDIGD 401 (597)
Q Consensus 322 l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~ 401 (597)
+..+..+++|++|++++|.+++. ++..+....++|+.|++++|.++.. ++..+..++ |++|++++|.+++
T Consensus 142 -p~~~~~l~~L~~L~L~~N~l~~~----~p~~l~~l~~~L~~L~L~~N~l~~~----~~~~~~~l~-L~~L~Ls~N~l~~ 211 (313)
T 1ogq_A 142 -PPSISSLPNLVGITFDGNRISGA----IPDSYGSFSKLFTSMTISRNRLTGK----IPPTFANLN-LAFVDLSRNMLEG 211 (313)
T ss_dssp -CGGGGGCTTCCEEECCSSCCEEE----CCGGGGCCCTTCCEEECCSSEEEEE----CCGGGGGCC-CSEEECCSSEEEE
T ss_pred -ChHHhcCCCCCeEECcCCcccCc----CCHHHhhhhhcCcEEECcCCeeecc----CChHHhCCc-ccEEECcCCcccC
Confidence 13355677777777777776532 1222222222677777777766642 344455554 7777777776654
Q ss_pred HHHHHHHHHHhcCCCccEEEccCCCCChHHHHHHHHHhhcCCCcCEEECcCCCCCHHHHHHHHHHHhhCCCcCEEecCCC
Q 007577 402 EGAEKIADALKQNRTITTIDLGGNNIHSKGASAIARVLKDNSVITSLDLAYNPIGADGAKALSEVLKFHGNINTLKLGWC 481 (597)
Q Consensus 402 ~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n 481 (597)
. .+..+..+++|++|++++|.++... ..+..+++|++|++++|.+++. +...+..+++|++|++++|
T Consensus 212 ~----~~~~~~~l~~L~~L~L~~N~l~~~~-----~~~~~l~~L~~L~Ls~N~l~~~----~p~~l~~l~~L~~L~Ls~N 278 (313)
T 1ogq_A 212 D----ASVLFGSDKNTQKIHLAKNSLAFDL-----GKVGLSKNLNGLDLRNNRIYGT----LPQGLTQLKFLHSLNVSFN 278 (313)
T ss_dssp C----CGGGCCTTSCCSEEECCSSEECCBG-----GGCCCCTTCCEEECCSSCCEEC----CCGGGGGCTTCCEEECCSS
T ss_pred c----CCHHHhcCCCCCEEECCCCceeeec-----CcccccCCCCEEECcCCcccCc----CChHHhcCcCCCEEECcCC
Confidence 3 3334445666666666666665321 1133445666666666655432 1122334455555555555
Q ss_pred CCC
Q 007577 482 QIG 484 (597)
Q Consensus 482 ~i~ 484 (597)
+++
T Consensus 279 ~l~ 281 (313)
T 1ogq_A 279 NLC 281 (313)
T ss_dssp EEE
T ss_pred ccc
Confidence 544
No 66
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.80 E-value=9.3e-22 Score=217.01 Aligned_cols=372 Identities=17% Similarity=0.151 Sum_probs=219.1
Q ss_pred HHhcCCCcEEEcCCCCCCHHHHHHHHHHhccCCCccEEEeccCCCCHHHHHHHHHHhhhCCCccEEEccCCCCChhHHHH
Q 007577 158 AKELRAFSSVDMSGRNFGDEGLFFLAESLGYNQTAEEVSFAANGITAAGIKAFDGVLQSNIALKTLNLSGNPIGDEGVKC 237 (597)
Q Consensus 158 ~~~~~~L~~L~Ls~~~l~~~~~~~l~~~l~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~ 237 (597)
+..+++|++|+|++|.|+... ..+|..+++|++|+|++|+|+... ...+..+++|++|++++|+++....
T Consensus 72 f~~l~~L~~L~Ls~N~i~~i~----~~~f~~L~~L~~L~Ls~N~l~~l~----~~~f~~L~~L~~L~Ls~N~l~~l~~-- 141 (635)
T 4g8a_A 72 FFSFPELQVLDLSRCEIQTIE----DGAYQSLSHLSTLILTGNPIQSLA----LGAFSGLSSLQKLVAVETNLASLEN-- 141 (635)
T ss_dssp TTTCTTCCEEECTTCCCCEEC----TTTTTTCTTCCEEECTTCCCCEEC----GGGGTTCTTCCEEECTTSCCCCSTT--
T ss_pred HhCCCCCCEEECCCCcCCCcC----hhHhcCCCCCCEEEccCCcCCCCC----HHHhcCCCCCCEEECCCCcCCCCCh--
Confidence 456889999999999887532 345778899999999999987542 2345678899999999998876421
Q ss_pred HHHHHhcCCCcCEEEecCCCCChHHHHHHHHHHHcCCCccEEEeccCCCChhhHHHHHHHHhhCC-CccEEEcCCCCCCh
Q 007577 238 LCDILVDNAGVERLQLSSVDLRDEGAKAIAELLKNNSILRVLELNNNMIDYSGFTSLAEALLENS-TIRSLHLNGNYGGA 316 (597)
Q Consensus 238 l~~~l~~~~~L~~L~Ls~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~-~L~~L~L~~n~i~~ 316 (597)
..+..+++|++|++++|.++... ++..+..+++|++|++++|+++......+. .+.+.. ....++++.|.+..
T Consensus 142 --~~~~~L~~L~~L~Ls~N~l~~~~---~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~-~L~~l~~~~~~~~ls~n~l~~ 215 (635)
T 4g8a_A 142 --FPIGHLKTLKELNVAHNLIQSFK---LPEYFSNLTNLEHLDLSSNKIQSIYCTDLR-VLHQMPLLNLSLDLSLNPMNF 215 (635)
T ss_dssp --CCCTTCTTCCEEECCSSCCCCCC---CCGGGGGCTTCCEEECCSSCCCEECGGGGH-HHHTCTTCCCEEECTTCCCCE
T ss_pred --hhhhcCcccCeeccccCccccCC---CchhhccchhhhhhcccCcccccccccccc-chhhhhhhhhhhhcccCcccc
Confidence 23456799999999999886531 234456678999999999988653322221 122221 22344444443321
Q ss_pred HH--------------------HHHHHHHhhcCCC---------------------------------------------
Q 007577 317 LG--------------------ANALAKGLEGNKS--------------------------------------------- 331 (597)
Q Consensus 317 ~~--------------------~~~l~~~l~~~~~--------------------------------------------- 331 (597)
.. .......+..+..
T Consensus 216 i~~~~~~~~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~~~~l~~~~l~~~~~~~~~ 295 (635)
T 4g8a_A 216 IQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYL 295 (635)
T ss_dssp ECTTTTTTCEEEEEEEESCCSSHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCTTTTGGGGGSEEEEEEEECCCSCE
T ss_pred cCcccccchhhhhhhhhcccccccccchhhcCCcccccccccccccccccccccccccccccccchhhhhhhhhhhcccc
Confidence 11 1111122222222
Q ss_pred ----------------------------------CCEEEccCCCCChHHHHHHHH--------------hhhcCccccce
Q 007577 332 ----------------------------------LRELHLHGNSIGDEGIRALMS--------------GLSSRKGKLAV 363 (597)
Q Consensus 332 ----------------------------------L~~L~Ls~n~i~~~~~~~l~~--------------~l~~~~~~L~~ 363 (597)
++.|++.+|.+.......+.. .....+++|+.
T Consensus 296 ~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~l~~L~~ 375 (635)
T 4g8a_A 296 DGIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEVDLPSLEF 375 (635)
T ss_dssp EECTTTTGGGTTCSEEEEESCEEEECGGGGSCCCCSEEEEESCEESSCCCCBCTTCCEEEEESCCSCCBCCCCBCTTCCE
T ss_pred cchhhhhhhhcccccccccccccccccccccchhhhhhhcccccccCcCcccchhhhhcccccccCCCCccccccccccc
Confidence 222222222211100000000 00001234555
Q ss_pred eeccCCCCChhHHHHHHHHHHcCCCCcEEEccCCC-----------------------CCcHHHHHHHHHHhcCCCccEE
Q 007577 364 LDIGNNSISAKGAFHVAEYIKNCKSLLWINLYMND-----------------------IGDEGAEKIADALKQNRTITTI 420 (597)
Q Consensus 364 L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~-----------------------l~~~~~~~l~~~l~~~~~L~~L 420 (597)
|++++|.+...+. .+..+..+.+|++|++..|. ..... -...+..++.++.+
T Consensus 376 L~ls~n~l~~~~~--~~~~~~~~~~L~~L~~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~---~~~~~~~l~~l~~l 450 (635)
T 4g8a_A 376 LDLSRNGLSFKGC--CSQSDFGTISLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMS---EFSVFLSLRNLIYL 450 (635)
T ss_dssp EECCSSCCBEEEE--CCHHHHSCSCCCEEECCSCSEEEECSCCTTCTTCCEEECTTSEEESTT---SSCTTTTCTTCCEE
T ss_pred chhhccccccccc--cccchhhhhhhhhhhccccccccccccccccccccchhhhhccccccc---cccccccccccccc
Confidence 5555554432110 11122233334444333321 11100 01124456788999
Q ss_pred EccCCCCChHHHHHHHHHhhcCCCcCEEECcCCCCCHHHHHHHHHHHhhCCCcCEEecCCCCCChhHHHHHHHHHhcCCC
Q 007577 421 DLGGNNIHSKGASAIARVLKDNSVITSLDLAYNPIGADGAKALSEVLKFHGNINTLKLGWCQIGASGAEFVADMLRYNNT 500 (597)
Q Consensus 421 ~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~ 500 (597)
++++|.+.... ...+..++.|+.|++++|.+.... ....+..+++|++|+|++|+++...+.. +..+++
T Consensus 451 ~ls~n~l~~~~----~~~~~~~~~L~~L~Ls~N~~~~~~---~~~~~~~l~~L~~L~Ls~N~L~~l~~~~----f~~l~~ 519 (635)
T 4g8a_A 451 DISHTHTRVAF----NGIFNGLSSLEVLKMAGNSFQENF---LPDIFTELRNLTFLDLSQCQLEQLSPTA----FNSLSS 519 (635)
T ss_dssp ECTTSCCEECC----TTTTTTCTTCCEEECTTCEEGGGE---ECSCCTTCTTCCEEECTTSCCCEECTTT----TTTCTT
T ss_pred ccccccccccc----ccccccchhhhhhhhhhccccccc---CchhhhhccccCEEECCCCccCCcChHH----HcCCCC
Confidence 99999876542 223455689999999999643211 1234456789999999999998765433 456699
Q ss_pred ccEEEccCCCCChHHHHHHHHHHhhcCccccEEEccCCCCChHHHHHHHHHHHhCCCCceeEEEcccCccc
Q 007577 501 ISILDLRANGLRDEGAKCLAQSFKVVNEALTSIDLAFNEIRDDGAFAIAQALKANEDVAVTSLNLANNFLT 571 (597)
Q Consensus 501 L~~L~l~~n~i~~~~~~~l~~~l~~~n~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~N~i~ 571 (597)
|++|+|++|+|+......+... ++|+.|||++|+|+...+..+.... .+|+.|+|++|++.
T Consensus 520 L~~L~Ls~N~l~~l~~~~~~~l-----~~L~~L~Ls~N~l~~~~~~~l~~l~-----~~L~~L~L~~Np~~ 580 (635)
T 4g8a_A 520 LQVLNMSHNNFFSLDTFPYKCL-----NSLQVLDYSLNHIMTSKKQELQHFP-----SSLAFLNLTQNDFA 580 (635)
T ss_dssp CCEEECTTSCCCBCCCGGGTTC-----TTCCEEECTTSCCCBCCSSCTTCCC-----TTCCEEECTTCCBC
T ss_pred CCEEECCCCcCCCCChhHHhCC-----CCCCEEECCCCcCCCCCHHHHHhhh-----CcCCEEEeeCCCCc
Confidence 9999999999887654444433 7799999999999876555443221 24999999999886
No 67
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.77 E-value=1.2e-20 Score=189.04 Aligned_cols=90 Identities=19% Similarity=0.152 Sum_probs=39.5
Q ss_pred hCCCccEEEccCCCCChhHHHHHHHHH--hcCCCcCEEEecCCCCChHHHHHHHHHHH-cCCCccEEEeccCCCChhhHH
Q 007577 216 SNIALKTLNLSGNPIGDEGVKCLCDIL--VDNAGVERLQLSSVDLRDEGAKAIAELLK-NNSILRVLELNNNMIDYSGFT 292 (597)
Q Consensus 216 ~~~~L~~L~Ls~n~l~~~~~~~l~~~l--~~~~~L~~L~Ls~~~l~~~~~~~l~~~l~-~~~~L~~L~Ls~n~i~~~~~~ 292 (597)
.+++|++|++++|.++.. ++..+ ..+++|++|++++|.++.. ...+..... ..++|++|++++|+++...
T Consensus 93 ~l~~L~~L~L~~n~l~~~----~~~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~-- 165 (312)
T 1wwl_A 93 GISGLQELTLENLEVTGT----APPPLLEATGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFS-- 165 (312)
T ss_dssp TTSCCCEEEEEEEBCBSC----CCCCSSSCCSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCC--
T ss_pred CcCCccEEEccCCcccch----hHHHHHHhcCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccch--
Confidence 345566666666655432 11111 3345566666666655543 111211100 0145555555555553211
Q ss_pred HHHHHHhhCCCccEEEcCCCCC
Q 007577 293 SLAEALLENSTIRSLHLNGNYG 314 (597)
Q Consensus 293 ~l~~~l~~~~~L~~L~L~~n~i 314 (597)
+..+..+++|++|++++|.+
T Consensus 166 --~~~~~~l~~L~~L~Ls~N~l 185 (312)
T 1wwl_A 166 --CEQVRVFPALSTLDLSDNPE 185 (312)
T ss_dssp --TTTCCCCSSCCEEECCSCTT
T ss_pred --HHHhccCCCCCEEECCCCCc
Confidence 12233344455555555443
No 68
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.77 E-value=1.9e-20 Score=187.46 Aligned_cols=161 Identities=14% Similarity=0.131 Sum_probs=75.1
Q ss_pred CCCccEEEcCCCCCChHHHHHHHHHhhcCCCCCEEEccCCCCChHHHHHHH-HhhhcCccccceeeccCCCCChhHHHHH
Q 007577 301 NSTIRSLHLNGNYGGALGANALAKGLEGNKSLRELHLHGNSIGDEGIRALM-SGLSSRKGKLAVLDIGNNSISAKGAFHV 379 (597)
Q Consensus 301 ~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~-~~l~~~~~~L~~L~Ls~n~l~~~~~~~l 379 (597)
+++|++|++++|.++.... ..+..+++|++|++++|.+..... +. ......+++|++|++++|.++.... ..
T Consensus 144 ~~~L~~L~Ls~n~l~~~~~----~~~~~l~~L~~L~Ls~N~l~~~~~--~~~~~~~~~l~~L~~L~Ls~N~l~~l~~-~~ 216 (310)
T 4glp_A 144 KPGLKVLSIAQAHSPAFSC----EQVRAFPALTSLDLSDNPGLGERG--LMAALCPHKFPAIQNLALRNTGMETPTG-VC 216 (310)
T ss_dssp CSCCCEEEEECCSSCCCCT----TSCCCCTTCCEEECCSCTTCHHHH--HHTTSCTTSSCCCCSCBCCSSCCCCHHH-HH
T ss_pred ccCCCEEEeeCCCcchhhH----HHhccCCCCCEEECCCCCCccchh--hhHHHhhhcCCCCCEEECCCCCCCchHH-HH
Confidence 4444444444444433221 223445555555555555433211 11 0111233456666666666553111 01
Q ss_pred HHHHHcCCCCcEEEccCCCCCcHHHHHHHHHHhcC---CCccEEEccCCCCChHHHHHHHHHhhcCCCcCEEECcCCCCC
Q 007577 380 AEYIKNCKSLLWINLYMNDIGDEGAEKIADALKQN---RTITTIDLGGNNIHSKGASAIARVLKDNSVITSLDLAYNPIG 456 (597)
Q Consensus 380 ~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~---~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~ 456 (597)
...+..+++|++|+|++|.+++. .+..+..+ ++|++|+|++|+|+. ++..+ .++|++|+|++|+++
T Consensus 217 ~~l~~~l~~L~~L~Ls~N~l~~~----~p~~~~~~~~~~~L~~L~Ls~N~l~~-----lp~~~--~~~L~~L~Ls~N~l~ 285 (310)
T 4glp_A 217 AALAAAGVQPHSLDLSHNSLRAT----VNPSAPRCMWSSALNSLNLSFAGLEQ-----VPKGL--PAKLRVLDLSSNRLN 285 (310)
T ss_dssp HHHHHHTCCCSSEECTTSCCCCC----CCSCCSSCCCCTTCCCEECCSSCCCS-----CCSCC--CSCCSCEECCSCCCC
T ss_pred HHHHhcCCCCCEEECCCCCCCcc----chhhHHhccCcCcCCEEECCCCCCCc-----hhhhh--cCCCCEEECCCCcCC
Confidence 11234556666666666665542 11112222 466666666666653 11111 156666666666665
Q ss_pred HHHHHHHHHHHhhCCCcCEEecCCCCCCh
Q 007577 457 ADGAKALSEVLKFHGNINTLKLGWCQIGA 485 (597)
Q Consensus 457 ~~~~~~l~~~l~~~~~L~~L~L~~n~i~~ 485 (597)
... .+..+++|++|++++|.+++
T Consensus 286 ~~~------~~~~l~~L~~L~L~~N~l~~ 308 (310)
T 4glp_A 286 RAP------QPDELPEVDNLTLDGNPFLV 308 (310)
T ss_dssp SCC------CTTSCCCCSCEECSSTTTSC
T ss_pred CCc------hhhhCCCccEEECcCCCCCC
Confidence 421 12344666666666666654
No 69
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.77 E-value=2.4e-21 Score=194.10 Aligned_cols=193 Identities=16% Similarity=0.174 Sum_probs=98.3
Q ss_pred CCCccEEEeccCCCCHHHHHHHHHHhhhCCCccEEEccCCCCChhHHHH-H---HHHHhcCCCcCEEEecCCCCChHHHH
Q 007577 189 NQTAEEVSFAANGITAAGIKAFDGVLQSNIALKTLNLSGNPIGDEGVKC-L---CDILVDNAGVERLQLSSVDLRDEGAK 264 (597)
Q Consensus 189 ~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~-l---~~~l~~~~~L~~L~Ls~~~l~~~~~~ 264 (597)
.++|+.|++++|.+ .. ...+... |+.|++++|.+....... + .-....+++|++|++++|.+++.
T Consensus 42 ~~~L~~l~l~~n~l-~~-p~~~~~~------L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~--- 110 (312)
T 1wwl_A 42 GRSLEYLLKRVDTE-AD-LGQFTDI------IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGT--- 110 (312)
T ss_dssp EEECTTHHHHCCTT-CC-CHHHHHH------HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSC---
T ss_pred CCCceeEeeccccc-cc-HHHHHHH------HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccch---
Confidence 34666666777766 11 2222222 555566665553211000 0 01112357888888888877643
Q ss_pred HHHHHH--HcCCCccEEEeccCCCChhhHHHHHHHHhh--CCCccEEEcCCCCCChHHHHHHHHHhhcCCCCCEEEccCC
Q 007577 265 AIAELL--KNNSILRVLELNNNMIDYSGFTSLAEALLE--NSTIRSLHLNGNYGGALGANALAKGLEGNKSLRELHLHGN 340 (597)
Q Consensus 265 ~l~~~l--~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~--~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n 340 (597)
++..+ ..+++|++|++++|++++. ...+. .+.. +++|++|++++|.++.... ..+..+++|++|++++|
T Consensus 111 -~~~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~-~l~~~~~~~L~~L~L~~N~l~~~~~----~~~~~l~~L~~L~Ls~N 183 (312)
T 1wwl_A 111 -APPPLLEATGPDLNILNLRNVSWATR-DAWLA-ELQQWLKPGLKVLSIAQAHSLNFSC----EQVRVFPALSTLDLSDN 183 (312)
T ss_dssp -CCCCSSSCCSCCCSEEEEESCBCSSS-SSHHH-HHHTTCCTTCCEEEEESCSCCCCCT----TTCCCCSSCCEEECCSC
T ss_pred -hHHHHHHhcCCCccEEEccCCCCcch-hHHHH-HHHHhhcCCCcEEEeeCCCCccchH----HHhccCCCCCEEECCCC
Confidence 22222 4567788888888877653 11111 1111 2677777777777665443 23556667777777777
Q ss_pred CCChHHHHHHHHhhhcCccccceeeccCCCCChhHHHHHHHHHHcCCCCcEEEccCCCCCc
Q 007577 341 SIGDEGIRALMSGLSSRKGKLAVLDIGNNSISAKGAFHVAEYIKNCKSLLWINLYMNDIGD 401 (597)
Q Consensus 341 ~i~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~ 401 (597)
.+.+.. ..........+++|+.|++++|.++..+. .....+..+++|++|++++|.+++
T Consensus 184 ~l~~~~-~~~~~~~~~~l~~L~~L~L~~N~l~~~~~-~~~~~~~~l~~L~~L~Ls~N~l~~ 242 (312)
T 1wwl_A 184 PELGER-GLISALCPLKFPTLQVLALRNAGMETPSG-VCSALAAARVQLQGLDLSHNSLRD 242 (312)
T ss_dssp TTCHHH-HHHHHSCTTSCTTCCEEECTTSCCCCHHH-HHHHHHHTTCCCSEEECTTSCCCS
T ss_pred CcCcch-HHHHHHHhccCCCCCEEECCCCcCcchHH-HHHHHHhcCCCCCEEECCCCcCCc
Confidence 654421 00111111334466666666666653111 111233455566666666665554
No 70
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.76 E-value=9e-21 Score=191.13 Aligned_cols=248 Identities=14% Similarity=0.153 Sum_probs=121.5
Q ss_pred CCHHHHHHHHHHhhh--CCCccEEEccCCCCChhHHHHHHHHHhcCCCcCEEEecCCCCChHHHHHHHHHHHcCCCccEE
Q 007577 202 ITAAGIKAFDGVLQS--NIALKTLNLSGNPIGDEGVKCLCDILVDNAGVERLQLSSVDLRDEGAKAIAELLKNNSILRVL 279 (597)
Q Consensus 202 l~~~~~~~l~~~l~~--~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~~~l~~~~~~~l~~~l~~~~~L~~L 279 (597)
........+...+.. .++++.|++++|.++. ++..+..+++|++|++++|.++. ++..+..+++|++|
T Consensus 63 ~~g~~~~~~~~~l~~~~~~~l~~L~L~~n~l~~-----lp~~l~~l~~L~~L~L~~n~l~~-----lp~~~~~l~~L~~L 132 (328)
T 4fcg_A 63 RTGRALKATADLLEDATQPGRVALELRSVPLPQ-----FPDQAFRLSHLQHMTIDAAGLME-----LPDTMQQFAGLETL 132 (328)
T ss_dssp SHHHHHHHHHHHHHHHTSTTCCEEEEESSCCSS-----CCSCGGGGTTCSEEEEESSCCCC-----CCSCGGGGTTCSEE
T ss_pred cCCcchhhhHHHHhcccccceeEEEccCCCchh-----cChhhhhCCCCCEEECCCCCccc-----hhHHHhccCCCCEE
Confidence 333334444433332 3577788888877763 33444456777777777777663 33444555777777
Q ss_pred EeccCCCChhhHHHHHHHHhhCCCccEEEcCCCCCChHHHHHHHHHhhcCCCCCEEEccCCCCChHHHHHHHHhhhcCcc
Q 007577 280 ELNNNMIDYSGFTSLAEALLENSTIRSLHLNGNYGGALGANALAKGLEGNKSLRELHLHGNSIGDEGIRALMSGLSSRKG 359 (597)
Q Consensus 280 ~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~ 359 (597)
++++|.++ .++..+..+++|++|++++|.+..... . .+....+.+. ...++
T Consensus 133 ~Ls~n~l~-----~lp~~l~~l~~L~~L~L~~n~~~~~~p----~------~~~~~~~~~~--------------~~~l~ 183 (328)
T 4fcg_A 133 TLARNPLR-----ALPASIASLNRLRELSIRACPELTELP----E------PLASTDASGE--------------HQGLV 183 (328)
T ss_dssp EEESCCCC-----CCCGGGGGCTTCCEEEEEEETTCCCCC----S------CSEEEC-CCC--------------EEEST
T ss_pred ECCCCccc-----cCcHHHhcCcCCCEEECCCCCCccccC----h------hHhhccchhh--------------hccCC
Confidence 77777664 224445556666666666643221100 0 0111000000 01233
Q ss_pred ccceeeccCCCCChhHHHHHHHHHHcCCCCcEEEccCCCCCcHHHHHHHHHHhcCCCccEEEccCCCCChHHHHHHHHHh
Q 007577 360 KLAVLDIGNNSISAKGAFHVAEYIKNCKSLLWINLYMNDIGDEGAEKIADALKQNRTITTIDLGGNNIHSKGASAIARVL 439 (597)
Q Consensus 360 ~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l 439 (597)
+|+.|++++|.++. ++..+..+++|++|+|++|.++. ++..+..+++|++|++++|++... ++..+
T Consensus 184 ~L~~L~L~~n~l~~-----lp~~l~~l~~L~~L~L~~N~l~~-----l~~~l~~l~~L~~L~Ls~n~~~~~----~p~~~ 249 (328)
T 4fcg_A 184 NLQSLRLEWTGIRS-----LPASIANLQNLKSLKIRNSPLSA-----LGPAIHHLPKLEELDLRGCTALRN----YPPIF 249 (328)
T ss_dssp TCCEEEEEEECCCC-----CCGGGGGCTTCCEEEEESSCCCC-----CCGGGGGCTTCCEEECTTCTTCCB----CCCCT
T ss_pred CCCEEECcCCCcCc-----chHhhcCCCCCCEEEccCCCCCc-----CchhhccCCCCCEEECcCCcchhh----hHHHh
Confidence 55555555555553 33445555555566655555553 222344455555555555544432 22223
Q ss_pred hcCCCcCEEECcCCCCCHHHHHHHHHHHhhCCCcCEEecCCCCCChhHHHHHHHHHhcCCCccEEEccCCC
Q 007577 440 KDNSVITSLDLAYNPIGADGAKALSEVLKFHGNINTLKLGWCQIGASGAEFVADMLRYNNTISILDLRANG 510 (597)
Q Consensus 440 ~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~n~ 510 (597)
..+++|++|++++|.+... +...+..+++|++|++++|.+....+ ..+..+++|+.+++..+.
T Consensus 250 ~~l~~L~~L~L~~n~~~~~----~p~~~~~l~~L~~L~L~~n~~~~~iP----~~l~~L~~L~~l~l~~~~ 312 (328)
T 4fcg_A 250 GGRAPLKRLILKDCSNLLT----LPLDIHRLTQLEKLDLRGCVNLSRLP----SLIAQLPANCIILVPPHL 312 (328)
T ss_dssp TCCCCCCEEECTTCTTCCB----CCTTGGGCTTCCEEECTTCTTCCCCC----GGGGGSCTTCEEECCGGG
T ss_pred cCCCCCCEEECCCCCchhh----cchhhhcCCCCCEEeCCCCCchhhcc----HHHhhccCceEEeCCHHH
Confidence 4445555555555544322 11223344555555555555433322 223334555555555543
No 71
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=99.76 E-value=1.8e-17 Score=152.01 Aligned_cols=136 Identities=24% Similarity=0.237 Sum_probs=66.9
Q ss_pred HHHHHHcCCCCcEEEccCC-CCCcHHHHHHHHHHhcCCCccEEEccCCCCChHHHHHHHHHhhcCCCcCEEECcCCCCCH
Q 007577 379 VAEYIKNCKSLLWINLYMN-DIGDEGAEKIADALKQNRTITTIDLGGNNIHSKGASAIARVLKDNSVITSLDLAYNPIGA 457 (597)
Q Consensus 379 l~~~l~~~~~L~~L~Ls~n-~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~ 457 (597)
+...+..+++|++|+|++| .++++++..++.++..+++|++|+|++|.|++.+...++..+..++.|++|+|++|.|++
T Consensus 28 l~~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~ 107 (185)
T 1io0_A 28 LKRIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISG 107 (185)
T ss_dssp HHHHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCH
T ss_pred HHHHHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCH
Confidence 3344444455555555555 555555555555554444555555555555555555555544444445555555555555
Q ss_pred HHHHHHHHHHhhCCCcCEEec--CCCCCChhHHHHHHHHHhcCCCccEEEccCCCCChH
Q 007577 458 DGAKALSEVLKFHGNINTLKL--GWCQIGASGAEFVADMLRYNNTISILDLRANGLRDE 514 (597)
Q Consensus 458 ~~~~~l~~~l~~~~~L~~L~L--~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~n~i~~~ 514 (597)
.+...+.+.+..+++|++|+| ++|.|++.+...++..+..+++|++|++++|.|++.
T Consensus 108 ~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~~~ 166 (185)
T 1io0_A 108 SGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQGPR 166 (185)
T ss_dssp HHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHHHH
T ss_pred HHHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCChH
Confidence 544444444444444444444 444444444444444444444444444444444443
No 72
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.76 E-value=5e-22 Score=198.65 Aligned_cols=265 Identities=15% Similarity=0.144 Sum_probs=163.1
Q ss_pred cCEEEecCCCCChHHHHHHHHHHHcCCCccEEEeccCCCChhhHHHHHHHHhhCCCccEEEcCCCCCChHHHHHHHHHhh
Q 007577 248 VERLQLSSVDLRDEGAKAIAELLKNNSILRVLELNNNMIDYSGFTSLAEALLENSTIRSLHLNGNYGGALGANALAKGLE 327 (597)
Q Consensus 248 L~~L~Ls~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~ 327 (597)
-+.++.+++.++.. +.. -.++|++|++++|.++... ...+..+++|++|++++|.++..+.. +..+.
T Consensus 9 ~~~l~c~~~~l~~i-----p~~--~~~~l~~L~L~~n~l~~i~----~~~~~~l~~L~~L~L~~n~l~~~~~~--~~~~~ 75 (306)
T 2z66_A 9 GTEIRCNSKGLTSV-----PTG--IPSSATRLELESNKLQSLP----HGVFDKLTQLTKLSLSSNGLSFKGCC--SQSDF 75 (306)
T ss_dssp TTEEECCSSCCSSC-----CSC--CCTTCCEEECCSSCCCCCC----TTTTTTCTTCSEEECCSSCCCEEEEE--EHHHH
T ss_pred CCEEEcCCCCcccC-----CCC--CCCCCCEEECCCCccCccC----HhHhhccccCCEEECCCCccCcccCc--ccccc
Confidence 35778887777653 221 1257888888888876321 22345678888888888887754210 01234
Q ss_pred cCCCCCEEEccCCCCChHHHHHHHHhhhcCccccceeeccCCCCChhHHHHHHHHHHcCCCCcEEEccCCCCCcHHHHHH
Q 007577 328 GNKSLRELHLHGNSIGDEGIRALMSGLSSRKGKLAVLDIGNNSISAKGAFHVAEYIKNCKSLLWINLYMNDIGDEGAEKI 407 (597)
Q Consensus 328 ~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l 407 (597)
.+++|++|++++|.+... ...+ ..+++|+.|++++|.++.... ...+..+++|++|++++|.++.. .
T Consensus 76 ~~~~L~~L~Ls~n~i~~l-----~~~~-~~l~~L~~L~l~~n~l~~~~~---~~~~~~l~~L~~L~l~~n~l~~~----~ 142 (306)
T 2z66_A 76 GTTSLKYLDLSFNGVITM-----SSNF-LGLEQLEHLDFQHSNLKQMSE---FSVFLSLRNLIYLDISHTHTRVA----F 142 (306)
T ss_dssp SCSCCCEEECCSCSEEEE-----EEEE-ETCTTCCEEECTTSEEESSTT---TTTTTTCTTCCEEECTTSCCEEC----S
T ss_pred cccccCEEECCCCccccC-----hhhc-CCCCCCCEEECCCCccccccc---chhhhhccCCCEEECCCCcCCcc----c
Confidence 678888888888877541 1122 345678888888887765210 12456778888888888877653 2
Q ss_pred HHHHhcCCCccEEEccCCCCChHHHHHHHHHhhcCCCcCEEECcCCCCCHHHHHHHHHHHhhCCCcCEEecCCCCCChhH
Q 007577 408 ADALKQNRTITTIDLGGNNIHSKGASAIARVLKDNSVITSLDLAYNPIGADGAKALSEVLKFHGNINTLKLGWCQIGASG 487 (597)
Q Consensus 408 ~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~ 487 (597)
...+..+++|++|++++|.+++.. +...+..+++|++|++++|.+++... ..+..+++|++|++++|.++...
T Consensus 143 ~~~~~~l~~L~~L~l~~n~l~~~~---~~~~~~~l~~L~~L~Ls~n~l~~~~~----~~~~~l~~L~~L~L~~N~l~~~~ 215 (306)
T 2z66_A 143 NGIFNGLSSLEVLKMAGNSFQENF---LPDIFTELRNLTFLDLSQCQLEQLSP----TAFNSLSSLQVLNMSHNNFFSLD 215 (306)
T ss_dssp TTTTTTCTTCCEEECTTCEEGGGE---ECSCCTTCTTCCEEECTTSCCCEECT----TTTTTCTTCCEEECTTSCCSBCC
T ss_pred hhhcccCcCCCEEECCCCcccccc---chhHHhhCcCCCEEECCCCCcCCcCH----HHhcCCCCCCEEECCCCccCccC
Confidence 334556778888888888765411 22334556778888888887765422 23345577888888888776543
Q ss_pred HHHHHHHHhcCCCccEEEccCCCCChHHHHHHHHHHhhcCccccEEEccCCCCCh-HHHHHHHHHHH
Q 007577 488 AEFVADMLRYNNTISILDLRANGLRDEGAKCLAQSFKVVNEALTSIDLAFNEIRD-DGAFAIAQALK 553 (597)
Q Consensus 488 ~~~l~~~l~~~~~L~~L~l~~n~i~~~~~~~l~~~l~~~n~~L~~L~Ls~n~i~~-~~~~~l~~~l~ 553 (597)
... +..+++|+.|++++|.+++.....+... .++|+.|++++|.++. .....+.++++
T Consensus 216 ~~~----~~~l~~L~~L~L~~N~l~~~~~~~~~~~----~~~L~~L~L~~N~~~~~c~~~~~~~~l~ 274 (306)
T 2z66_A 216 TFP----YKCLNSLQVLDYSLNHIMTSKKQELQHF----PSSLAFLNLTQNDFACTCEHQSFLQWIK 274 (306)
T ss_dssp SGG----GTTCTTCCEEECTTSCCCBCSSSSCCCC----CTTCCEEECTTCCEECSGGGHHHHHHHH
T ss_pred hhh----ccCcccCCEeECCCCCCcccCHHHHHhh----hccCCEEEccCCCeecccChHHHHHHHH
Confidence 322 3455777888888777776543333221 1357777777777653 23334444444
No 73
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.76 E-value=2.1e-20 Score=188.45 Aligned_cols=223 Identities=17% Similarity=0.151 Sum_probs=124.1
Q ss_pred cCCCcEEEcCCCCCCHHHHHHHHHHhccCCCccEEEeccCCCCHHHHHHHHHHhhhCCCccEEEccCCCCChhHHHHHHH
Q 007577 161 LRAFSSVDMSGRNFGDEGLFFLAESLGYNQTAEEVSFAANGITAAGIKAFDGVLQSNIALKTLNLSGNPIGDEGVKCLCD 240 (597)
Q Consensus 161 ~~~L~~L~Ls~~~l~~~~~~~l~~~l~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~ 240 (597)
.+++++|+|++|.+.. ++..+..+++|++|++++|.++. ++..+..+++|++|++++|.+.. ++.
T Consensus 80 ~~~l~~L~L~~n~l~~-----lp~~l~~l~~L~~L~L~~n~l~~-----lp~~~~~l~~L~~L~Ls~n~l~~-----lp~ 144 (328)
T 4fcg_A 80 QPGRVALELRSVPLPQ-----FPDQAFRLSHLQHMTIDAAGLME-----LPDTMQQFAGLETLTLARNPLRA-----LPA 144 (328)
T ss_dssp STTCCEEEEESSCCSS-----CCSCGGGGTTCSEEEEESSCCCC-----CCSCGGGGTTCSEEEEESCCCCC-----CCG
T ss_pred ccceeEEEccCCCchh-----cChhhhhCCCCCEEECCCCCccc-----hhHHHhccCCCCEEECCCCcccc-----CcH
Confidence 4778899999888763 45556667888888888888762 33445667788888888888773 445
Q ss_pred HHhcCCCcCEEEecCCCCChHHHHHHHHHH---------HcCCCccEEEeccCCCChhhHHHHHHHHhhCCCccEEEcCC
Q 007577 241 ILVDNAGVERLQLSSVDLRDEGAKAIAELL---------KNNSILRVLELNNNMIDYSGFTSLAEALLENSTIRSLHLNG 311 (597)
Q Consensus 241 ~l~~~~~L~~L~Ls~~~l~~~~~~~l~~~l---------~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~L~~ 311 (597)
.+..+++|++|++++|.+... ++..+ ..+++|++|++++|.++ .++..+..+++|++|++++
T Consensus 145 ~l~~l~~L~~L~L~~n~~~~~----~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~-----~lp~~l~~l~~L~~L~L~~ 215 (328)
T 4fcg_A 145 SIASLNRLRELSIRACPELTE----LPEPLASTDASGEHQGLVNLQSLRLEWTGIR-----SLPASIANLQNLKSLKIRN 215 (328)
T ss_dssp GGGGCTTCCEEEEEEETTCCC----CCSCSEEEC-CCCEEESTTCCEEEEEEECCC-----CCCGGGGGCTTCCEEEEES
T ss_pred HHhcCcCCCEEECCCCCCccc----cChhHhhccchhhhccCCCCCEEECcCCCcC-----cchHhhcCCCCCCEEEccC
Confidence 566678888888888654432 22222 12466666666666654 2233445556666666666
Q ss_pred CCCChHHHHHHHHHhhcCCCCCEEEccCCCCChHHHHHHHHhhhcCccccceeeccCCCCChhHHHHHHHHHHcCCCCcE
Q 007577 312 NYGGALGANALAKGLEGNKSLRELHLHGNSIGDEGIRALMSGLSSRKGKLAVLDIGNNSISAKGAFHVAEYIKNCKSLLW 391 (597)
Q Consensus 312 n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~ 391 (597)
|.++... ..+..+++|++|++++|.+... +...+ ..+++|+.|++++|.+... ++..+..+++|++
T Consensus 216 N~l~~l~-----~~l~~l~~L~~L~Ls~n~~~~~----~p~~~-~~l~~L~~L~L~~n~~~~~----~p~~~~~l~~L~~ 281 (328)
T 4fcg_A 216 SPLSALG-----PAIHHLPKLEELDLRGCTALRN----YPPIF-GGRAPLKRLILKDCSNLLT----LPLDIHRLTQLEK 281 (328)
T ss_dssp SCCCCCC-----GGGGGCTTCCEEECTTCTTCCB----CCCCT-TCCCCCCEEECTTCTTCCB----CCTTGGGCTTCCE
T ss_pred CCCCcCc-----hhhccCCCCCEEECcCCcchhh----hHHHh-cCCCCCCEEECCCCCchhh----cchhhhcCCCCCE
Confidence 6555322 2244555566666655544332 11111 2233455555555443331 3333444444555
Q ss_pred EEccCCCCCcHHHHHHHHHHhcCCCccEEEccCC
Q 007577 392 INLYMNDIGDEGAEKIADALKQNRTITTIDLGGN 425 (597)
Q Consensus 392 L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n 425 (597)
|+|++|.+... ++..+..+++|+.+++..+
T Consensus 282 L~L~~n~~~~~----iP~~l~~L~~L~~l~l~~~ 311 (328)
T 4fcg_A 282 LDLRGCVNLSR----LPSLIAQLPANCIILVPPH 311 (328)
T ss_dssp EECTTCTTCCC----CCGGGGGSCTTCEEECCGG
T ss_pred EeCCCCCchhh----ccHHHhhccCceEEeCCHH
Confidence 55544443332 3333444444444444433
No 74
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.76 E-value=1.6e-19 Score=180.73 Aligned_cols=239 Identities=18% Similarity=0.171 Sum_probs=100.7
Q ss_pred CccEEEeccCCCCHHHHHHHHHHhhhCCCccEEEccCCCCChhHHHHHHHHH--hcCCCcCEEEecCCCCChHHHHHHHH
Q 007577 191 TAEEVSFAANGITAAGIKAFDGVLQSNIALKTLNLSGNPIGDEGVKCLCDIL--VDNAGVERLQLSSVDLRDEGAKAIAE 268 (597)
Q Consensus 191 ~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l--~~~~~L~~L~Ls~~~l~~~~~~~l~~ 268 (597)
.++.+.+.++.+++..+..+...+.. ++|++|++++|.+..... ..+ ..+++|++|++++|.++......-..
T Consensus 65 ~l~~l~l~~~~~~~~~~~~~~~~~~~-~~L~~L~l~~n~l~~~~~----~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~ 139 (310)
T 4glp_A 65 RVRRLTVGAAQVPAQLLVGALRVLAY-SRLKELTLEDLKITGTMP----PLPLEATGLALSSLRLRNVSWATGRSWLAEL 139 (310)
T ss_dssp CCCEEEECSCCCBHHHHHHHHHHHHH-SCCCEEEEESCCCBSCCC----CCSSSCCCBCCSSCEEESCCCSSTTSSHHHH
T ss_pred ceeEEEEeCCcCCHHHHHHHHHhccc-CceeEEEeeCCEeccchh----hhhhhccCCCCCEEEeecccccchhhhhHHH
Confidence 45555555555555544444443322 445555555555543211 111 23455555555555554311100001
Q ss_pred HHHcCCCccEEEeccCCCChhhHHHHHHHHhhCCCccEEEcCCCCCChHHHHHHHHHhhcCCCCCEEEccCCCCChHHHH
Q 007577 269 LLKNNSILRVLELNNNMIDYSGFTSLAEALLENSTIRSLHLNGNYGGALGANALAKGLEGNKSLRELHLHGNSIGDEGIR 348 (597)
Q Consensus 269 ~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~ 348 (597)
.+..+++|++|++++|.++... +..+..+++|++|++++|.+...........+..+++|++|++++|.++.. .
T Consensus 140 ~~~~~~~L~~L~Ls~n~l~~~~----~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l--~ 213 (310)
T 4glp_A 140 QQWLKPGLKVLSIAQAHSPAFS----CEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETP--T 213 (310)
T ss_dssp HTTBCSCCCEEEEECCSSCCCC----TTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCH--H
T ss_pred HhhhccCCCEEEeeCCCcchhh----HHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCch--H
Confidence 1223455555555555553211 222334455555555555543221100011123445555555555555421 1
Q ss_pred HHHHhhhcCccccceeeccCCCCChhHHHHHHHHHHcC---CCCcEEEccCCCCCcHHHHHHHHHHhcCCCccEEEccCC
Q 007577 349 ALMSGLSSRKGKLAVLDIGNNSISAKGAFHVAEYIKNC---KSLLWINLYMNDIGDEGAEKIADALKQNRTITTIDLGGN 425 (597)
Q Consensus 349 ~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~---~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n 425 (597)
.....+...+++|++|++++|.++.. .+..+..+ ++|++|+|++|.++. ++..+ .++|++|+|++|
T Consensus 214 ~~~~~l~~~l~~L~~L~Ls~N~l~~~----~p~~~~~~~~~~~L~~L~Ls~N~l~~-----lp~~~--~~~L~~L~Ls~N 282 (310)
T 4glp_A 214 GVCAALAAAGVQPHSLDLSHNSLRAT----VNPSAPRCMWSSALNSLNLSFAGLEQ-----VPKGL--PAKLRVLDLSSN 282 (310)
T ss_dssp HHHHHHHHHTCCCSSEECTTSCCCCC----CCSCCSSCCCCTTCCCEECCSSCCCS-----CCSCC--CSCCSCEECCSC
T ss_pred HHHHHHHhcCCCCCEEECCCCCCCcc----chhhHHhccCcCcCCEEECCCCCCCc-----hhhhh--cCCCCEEECCCC
Confidence 11111112223555555555555441 12222222 355555555555542 22211 145555555555
Q ss_pred CCChHHHHHHHHHhhcCCCcCEEECcCCCCCH
Q 007577 426 NIHSKGASAIARVLKDNSVITSLDLAYNPIGA 457 (597)
Q Consensus 426 ~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~ 457 (597)
+|+... .+..+++|++|+|++|++++
T Consensus 283 ~l~~~~------~~~~l~~L~~L~L~~N~l~~ 308 (310)
T 4glp_A 283 RLNRAP------QPDELPEVDNLTLDGNPFLV 308 (310)
T ss_dssp CCCSCC------CTTSCCCCSCEECSSTTTSC
T ss_pred cCCCCc------hhhhCCCccEEECcCCCCCC
Confidence 555320 02334555555555555543
No 75
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=99.76 E-value=4.4e-17 Score=149.43 Aligned_cols=137 Identities=19% Similarity=0.242 Sum_probs=69.0
Q ss_pred HHHHHHhcCCCccEEEccCC-CCChHHHHHHHHHhhcCCCcCEEECcCCCCCHHHHHHHHHHHhhCCCcCEEecCCCCCC
Q 007577 406 KIADALKQNRTITTIDLGGN-NIHSKGASAIARVLKDNSVITSLDLAYNPIGADGAKALSEVLKFHGNINTLKLGWCQIG 484 (597)
Q Consensus 406 ~l~~~l~~~~~L~~L~L~~n-~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~i~ 484 (597)
.+...+..+++|++|+|++| .|++.++..++..+..+++|++|+|++|.|++++...+.+.+..+++|++|+|++|.|+
T Consensus 27 ~l~~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~ 106 (185)
T 1io0_A 27 TLKRIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFIS 106 (185)
T ss_dssp HHHHHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCC
T ss_pred HHHHHHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCC
Confidence 34444444555555555555 55555555555555555555555555555555555555555555555555555555555
Q ss_pred hhHHHHHHHHHhcCCCccEEEc--cCCCCChHHHHHHHHHHhhcCccccEEEccCCCCChH
Q 007577 485 ASGAEFVADMLRYNNTISILDL--RANGLRDEGAKCLAQSFKVVNEALTSIDLAFNEIRDD 543 (597)
Q Consensus 485 ~~~~~~l~~~l~~~~~L~~L~l--~~n~i~~~~~~~l~~~l~~~n~~L~~L~Ls~n~i~~~ 543 (597)
+.+...++..+..+++|++|++ ++|.|++.+...+++.+.. +++|++|+|++|.|++.
T Consensus 107 ~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~-n~~L~~L~L~~n~i~~~ 166 (185)
T 1io0_A 107 GSGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEK-NTTLLKFGYHFTQQGPR 166 (185)
T ss_dssp HHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHH-CSSCCEEECCCSSHHHH
T ss_pred HHHHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHh-CCCcCEEeccCCCCChH
Confidence 5555555555544445555555 4445554444444444432 24444444444444433
No 76
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.75 E-value=1.3e-20 Score=198.35 Aligned_cols=247 Identities=16% Similarity=0.151 Sum_probs=152.7
Q ss_pred CccEEEccCCCCChhHHHHHHHHHhcCCCcCEEEecCCCCChHHHHHHHHHHHcCCCccEEEeccCCCChhhHHHHHHHH
Q 007577 219 ALKTLNLSGNPIGDEGVKCLCDILVDNAGVERLQLSSVDLRDEGAKAIAELLKNNSILRVLELNNNMIDYSGFTSLAEAL 298 (597)
Q Consensus 219 ~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l 298 (597)
..+.++.+++.++.. +..+ .++++.|+|++|.++.... ..+..+++|++|+|++|.++... ...+
T Consensus 44 ~~~~v~c~~~~l~~i-----P~~~--~~~l~~L~L~~n~i~~~~~----~~~~~l~~L~~L~Ls~n~i~~i~----~~~~ 108 (440)
T 3zyj_A 44 QFSKVICVRKNLREV-----PDGI--STNTRLLNLHENQIQIIKV----NSFKHLRHLEILQLSRNHIRTIE----IGAF 108 (440)
T ss_dssp TSCEEECCSCCCSSC-----CSCC--CTTCSEEECCSCCCCEECT----TTTSSCSSCCEEECCSSCCCEEC----GGGG
T ss_pred CCCEEEeCCCCcCcC-----CCCC--CCCCcEEEccCCcCCeeCH----HHhhCCCCCCEEECCCCcCCccC----hhhc
Confidence 456777777766542 2211 2678888888888876432 33455688888888888876432 2345
Q ss_pred hhCCCccEEEcCCCCCChHHHHHHHHHhhcCCCCCEEEccCCCCChHHHHHHHHhhhcCccccceeeccCC-CCChhHHH
Q 007577 299 LENSTIRSLHLNGNYGGALGANALAKGLEGNKSLRELHLHGNSIGDEGIRALMSGLSSRKGKLAVLDIGNN-SISAKGAF 377 (597)
Q Consensus 299 ~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~Ls~n-~l~~~~~~ 377 (597)
..+++|++|+|++|.++.... ..+..+++|++|++++|.++.. .......+++|+.|++++| .+...
T Consensus 109 ~~l~~L~~L~L~~n~l~~~~~----~~~~~l~~L~~L~L~~N~i~~~-----~~~~~~~l~~L~~L~l~~~~~l~~i--- 176 (440)
T 3zyj_A 109 NGLANLNTLELFDNRLTTIPN----GAFVYLSKLKELWLRNNPIESI-----PSYAFNRIPSLRRLDLGELKRLSYI--- 176 (440)
T ss_dssp TTCSSCCEEECCSSCCSSCCT----TTSCSCSSCCEEECCSCCCCEE-----CTTTTTTCTTCCEEECCCCTTCCEE---
T ss_pred cCCccCCEEECCCCcCCeeCH----hHhhccccCceeeCCCCccccc-----CHHHhhhCcccCEeCCCCCCCccee---
Confidence 567788888888887765443 2356777888888888877652 1222244567777777774 33331
Q ss_pred HHHHHHHcCCCCcEEEccCCCCCcHHHHHHHHHHhcCCCccEEEccCCCCChHHHHHHHHHhhcCCCcCEEECcCCCCCH
Q 007577 378 HVAEYIKNCKSLLWINLYMNDIGDEGAEKIADALKQNRTITTIDLGGNNIHSKGASAIARVLKDNSVITSLDLAYNPIGA 457 (597)
Q Consensus 378 ~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~ 457 (597)
....+..+++|++|+|++|.+++. + .+..+++|++|+|++|.|+... ...+..+++|++|+|++|.++.
T Consensus 177 -~~~~~~~l~~L~~L~L~~n~l~~~-----~-~~~~l~~L~~L~Ls~N~l~~~~----~~~~~~l~~L~~L~L~~n~l~~ 245 (440)
T 3zyj_A 177 -SEGAFEGLSNLRYLNLAMCNLREI-----P-NLTPLIKLDELDLSGNHLSAIR----PGSFQGLMHLQKLWMIQSQIQV 245 (440)
T ss_dssp -CTTTTTTCSSCCEEECTTSCCSSC-----C-CCTTCSSCCEEECTTSCCCEEC----TTTTTTCTTCCEEECTTCCCCE
T ss_pred -CcchhhcccccCeecCCCCcCccc-----c-ccCCCcccCEEECCCCccCccC----hhhhccCccCCEEECCCCceeE
Confidence 112356677777777777777642 1 2455667777777777776542 2234455777777777776665
Q ss_pred HHHHHHHHHHhhCCCcCEEecCCCCCChhHHHHHHHHHhcCCCccEEEccCCCC
Q 007577 458 DGAKALSEVLKFHGNINTLKLGWCQIGASGAEFVADMLRYNNTISILDLRANGL 511 (597)
Q Consensus 458 ~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~n~i 511 (597)
... ..+..+++|++|+|++|+++..... .+..+++|+.|++++|.+
T Consensus 246 ~~~----~~~~~l~~L~~L~L~~N~l~~~~~~----~~~~l~~L~~L~L~~Np~ 291 (440)
T 3zyj_A 246 IER----NAFDNLQSLVEINLAHNNLTLLPHD----LFTPLHHLERIHLHHNPW 291 (440)
T ss_dssp ECT----TSSTTCTTCCEEECTTSCCCCCCTT----TTSSCTTCCEEECCSSCE
T ss_pred ECh----hhhcCCCCCCEEECCCCCCCccChh----HhccccCCCEEEcCCCCc
Confidence 422 2234456777777777776654332 233456677777777644
No 77
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.74 E-value=6e-20 Score=195.22 Aligned_cols=237 Identities=21% Similarity=0.236 Sum_probs=154.0
Q ss_pred hcCCCcEEEcCCCCCCHHHHHHHHHHhccCCCccEEEeccCCCCHHHHHHHHHHhhhCCCccEEEccCCCCChhHHHHHH
Q 007577 160 ELRAFSSVDMSGRNFGDEGLFFLAESLGYNQTAEEVSFAANGITAAGIKAFDGVLQSNIALKTLNLSGNPIGDEGVKCLC 239 (597)
Q Consensus 160 ~~~~L~~L~Ls~~~l~~~~~~~l~~~l~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~ 239 (597)
..++|++|+|++|.+... .+..+..+++|+.|+|++|.++.... +..+++|++|+|++|.++...
T Consensus 32 ~~~~L~~L~Ls~n~l~~~----~~~~~~~l~~L~~L~Ls~N~l~~~~~------l~~l~~L~~L~Ls~N~l~~l~----- 96 (487)
T 3oja_A 32 SAWNVKELDLSGNPLSQI----SAADLAPFTKLELLNLSSNVLYETLD------LESLSTLRTLDLNNNYVQELL----- 96 (487)
T ss_dssp TGGGCCEEECCSSCCCCC----CGGGGTTCTTCCEEECTTSCCEEEEE------CTTCTTCCEEECCSSEEEEEE-----
T ss_pred cCCCccEEEeeCCcCCCC----CHHHHhCCCCCCEEEeeCCCCCCCcc------cccCCCCCEEEecCCcCCCCC-----
Confidence 345788888888887653 23456777888888888888764321 566778888888888776431
Q ss_pred HHHhcCCCcCEEEecCCCCChHHHHHHHHHHHcCCCccEEEeccCCCChhhHHHHHHHHhhCCCccEEEcCCCCCChHHH
Q 007577 240 DILVDNAGVERLQLSSVDLRDEGAKAIAELLKNNSILRVLELNNNMIDYSGFTSLAEALLENSTIRSLHLNGNYGGALGA 319 (597)
Q Consensus 240 ~~l~~~~~L~~L~Ls~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~ 319 (597)
..++|++|++++|.++.... ..+++|++|++++|.+++.. +..+..+++|+.|++++|.++....
T Consensus 97 ----~~~~L~~L~L~~N~l~~~~~-------~~l~~L~~L~L~~N~l~~~~----~~~~~~l~~L~~L~Ls~N~l~~~~~ 161 (487)
T 3oja_A 97 ----VGPSIETLHAANNNISRVSC-------SRGQGKKNIYLANNKITMLR----DLDEGCRSRVQYLDLKLNEIDTVNF 161 (487)
T ss_dssp ----ECTTCCEEECCSSCCCCEEE-------CCCSSCEEEECCSSCCCSGG----GBCGGGGSSEEEEECTTSCCCEEEG
T ss_pred ----CCCCcCEEECcCCcCCCCCc-------cccCCCCEEECCCCCCCCCC----chhhcCCCCCCEEECCCCCCCCcCh
Confidence 23778888888888776421 12467888888888876432 2334556788888888887776433
Q ss_pred HHHHHHh-hcCCCCCEEEccCCCCChHHHHHHHHhhhcCccccceeeccCCCCChhHHHHHHHHHHcCCCCcEEEccCCC
Q 007577 320 NALAKGL-EGNKSLRELHLHGNSIGDEGIRALMSGLSSRKGKLAVLDIGNNSISAKGAFHVAEYIKNCKSLLWINLYMND 398 (597)
Q Consensus 320 ~~l~~~l-~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~ 398 (597)
..+ ..+++|+.|++++|.+++.. .. ..+++|+.|+|++|.++. ++..+..+++|+.|+|++|.
T Consensus 162 ----~~l~~~l~~L~~L~Ls~N~l~~~~------~~-~~l~~L~~L~Ls~N~l~~-----~~~~~~~l~~L~~L~Ls~N~ 225 (487)
T 3oja_A 162 ----AELAASSDTLEHLNLQYNFIYDVK------GQ-VVFAKLKTLDLSSNKLAF-----MGPEFQSAAGVTWISLRNNK 225 (487)
T ss_dssp ----GGGGGGTTTCCEEECTTSCCCEEE------CC-CCCTTCCEEECCSSCCCE-----ECGGGGGGTTCSEEECTTSC
T ss_pred ----HHHhhhCCcccEEecCCCcccccc------cc-ccCCCCCEEECCCCCCCC-----CCHhHcCCCCccEEEecCCc
Confidence 222 25677888888888776531 11 134577778888877776 33446677777777777777
Q ss_pred CCcHHHHHHHHHHhcCCCccEEEccCCCCChHHHHHHHHHhhcCCCcCEEEC
Q 007577 399 IGDEGAEKIADALKQNRTITTIDLGGNNIHSKGASAIARVLKDNSVITSLDL 450 (597)
Q Consensus 399 l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L 450 (597)
++. ++..+..+++|+.|++++|.+.... +...+..++.|+.+++
T Consensus 226 l~~-----lp~~l~~l~~L~~L~l~~N~l~c~~---~~~~~~~l~~L~~l~~ 269 (487)
T 3oja_A 226 LVL-----IEKALRFSQNLEHFDLRGNGFHCGT---LRDFFSKNQRVQTVAK 269 (487)
T ss_dssp CCE-----ECTTCCCCTTCCEEECTTCCBCHHH---HHHHHTTCHHHHHHHH
T ss_pred Ccc-----cchhhccCCCCCEEEcCCCCCcCcc---hHHHHHhCCCCcEEec
Confidence 765 3444555677777777777776332 3334444455555444
No 78
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.73 E-value=4.2e-20 Score=195.12 Aligned_cols=226 Identities=19% Similarity=0.187 Sum_probs=134.8
Q ss_pred CCcCEEEecCCCCChHHHHHHHHHHHcCCCccEEEeccCCCChhhHHHHHHHHhhCCCccEEEcCCCCCChHHHHHHHHH
Q 007577 246 AGVERLQLSSVDLRDEGAKAIAELLKNNSILRVLELNNNMIDYSGFTSLAEALLENSTIRSLHLNGNYGGALGANALAKG 325 (597)
Q Consensus 246 ~~L~~L~Ls~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~ 325 (597)
+++++|+|++|.++... ...+..+++|++|+|++|.|+... +..+..+++|++|+|++|.++.... ..
T Consensus 75 ~~l~~L~L~~n~i~~~~----~~~~~~l~~L~~L~Ls~n~i~~~~----~~~~~~l~~L~~L~L~~n~l~~~~~----~~ 142 (452)
T 3zyi_A 75 SNTRYLNLMENNIQMIQ----ADTFRHLHHLEVLQLGRNSIRQIE----VGAFNGLASLNTLELFDNWLTVIPS----GA 142 (452)
T ss_dssp TTCSEEECCSSCCCEEC----TTTTTTCTTCCEEECCSSCCCEEC----TTTTTTCTTCCEEECCSSCCSBCCT----TT
T ss_pred CCccEEECcCCcCceEC----HHHcCCCCCCCEEECCCCccCCcC----hhhccCcccCCEEECCCCcCCccCh----hh
Confidence 67888888888887642 233455688888888888876432 2345567788888888887765443 33
Q ss_pred hhcCCCCCEEEccCCCCChHHHHHHHHhhhcCccccceeeccCC-CCChhHHHHHHHHHHcCCCCcEEEccCCCCCcHHH
Q 007577 326 LEGNKSLRELHLHGNSIGDEGIRALMSGLSSRKGKLAVLDIGNN-SISAKGAFHVAEYIKNCKSLLWINLYMNDIGDEGA 404 (597)
Q Consensus 326 l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~Ls~n-~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~ 404 (597)
+..+++|++|++++|.++.. .......+++|+.|++++| .+... ....+..+++|++|+|++|.+++.
T Consensus 143 ~~~l~~L~~L~L~~N~l~~~-----~~~~~~~l~~L~~L~l~~~~~l~~i----~~~~~~~l~~L~~L~L~~n~l~~~-- 211 (452)
T 3zyi_A 143 FEYLSKLRELWLRNNPIESI-----PSYAFNRVPSLMRLDLGELKKLEYI----SEGAFEGLFNLKYLNLGMCNIKDM-- 211 (452)
T ss_dssp SSSCTTCCEEECCSCCCCEE-----CTTTTTTCTTCCEEECCCCTTCCEE----CTTTTTTCTTCCEEECTTSCCSSC--
T ss_pred hcccCCCCEEECCCCCccee-----CHhHHhcCCcccEEeCCCCCCcccc----ChhhccCCCCCCEEECCCCccccc--
Confidence 55677788888887777642 2222244557777777774 33331 112345666777777777766642
Q ss_pred HHHHHHHhcCCCccEEEccCCCCChHHHHHHHHHhhcCCCcCEEECcCCCCCHHHHHHHHHHHhhCCCcCEEecCCCCCC
Q 007577 405 EKIADALKQNRTITTIDLGGNNIHSKGASAIARVLKDNSVITSLDLAYNPIGADGAKALSEVLKFHGNINTLKLGWCQIG 484 (597)
Q Consensus 405 ~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~i~ 484 (597)
..+..+++|++|+|++|.|+... ...+..+++|++|+|++|.++.... ..+..+++|++|+|++|+++
T Consensus 212 ----~~~~~l~~L~~L~Ls~N~l~~~~----~~~~~~l~~L~~L~L~~n~l~~~~~----~~~~~l~~L~~L~L~~N~l~ 279 (452)
T 3zyi_A 212 ----PNLTPLVGLEELEMSGNHFPEIR----PGSFHGLSSLKKLWVMNSQVSLIER----NAFDGLASLVELNLAHNNLS 279 (452)
T ss_dssp ----CCCTTCTTCCEEECTTSCCSEEC----GGGGTTCTTCCEEECTTSCCCEECT----TTTTTCTTCCEEECCSSCCS
T ss_pred ----ccccccccccEEECcCCcCcccC----cccccCccCCCEEEeCCCcCceECH----HHhcCCCCCCEEECCCCcCC
Confidence 12445566777777777666532 2234445666666666666654322 22334466666666666665
Q ss_pred hhHHHHHHHHHhcCCCccEEEccCCC
Q 007577 485 ASGAEFVADMLRYNNTISILDLRANG 510 (597)
Q Consensus 485 ~~~~~~l~~~l~~~~~L~~L~l~~n~ 510 (597)
..... .+..+++|+.|++++|.
T Consensus 280 ~~~~~----~~~~l~~L~~L~L~~Np 301 (452)
T 3zyi_A 280 SLPHD----LFTPLRYLVELHLHHNP 301 (452)
T ss_dssp CCCTT----SSTTCTTCCEEECCSSC
T ss_pred ccChH----HhccccCCCEEEccCCC
Confidence 43322 12334566666666664
No 79
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.73 E-value=2.3e-20 Score=196.40 Aligned_cols=260 Identities=17% Similarity=0.128 Sum_probs=187.3
Q ss_pred CcCEEEecCCCCChHHHHHHHHHHHcCCCccEEEeccCCCChhhHHHHHHHHhhCCCccEEEcCCCCCChHHHHHHHHHh
Q 007577 247 GVERLQLSSVDLRDEGAKAIAELLKNNSILRVLELNNNMIDYSGFTSLAEALLENSTIRSLHLNGNYGGALGANALAKGL 326 (597)
Q Consensus 247 ~L~~L~Ls~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l 326 (597)
....++.++..++.. +..+ .++++.|+|++|+|+... ...+..+++|++|+|++|.++.... ..+
T Consensus 44 ~~~~v~c~~~~l~~i-----P~~~--~~~l~~L~L~~n~i~~~~----~~~~~~l~~L~~L~Ls~n~i~~i~~----~~~ 108 (440)
T 3zyj_A 44 QFSKVICVRKNLREV-----PDGI--STNTRLLNLHENQIQIIK----VNSFKHLRHLEILQLSRNHIRTIEI----GAF 108 (440)
T ss_dssp TSCEEECCSCCCSSC-----CSCC--CTTCSEEECCSCCCCEEC----TTTTSSCSSCCEEECCSSCCCEECG----GGG
T ss_pred CCCEEEeCCCCcCcC-----CCCC--CCCCcEEEccCCcCCeeC----HHHhhCCCCCCEEECCCCcCCccCh----hhc
Confidence 456788888777652 2222 267999999999987543 2456678999999999999887654 457
Q ss_pred hcCCCCCEEEccCCCCChHHHHHHHHhhhcCccccceeeccCCCCChhHHHHHHHHHHcCCCCcEEEccCC-CCCcHHHH
Q 007577 327 EGNKSLRELHLHGNSIGDEGIRALMSGLSSRKGKLAVLDIGNNSISAKGAFHVAEYIKNCKSLLWINLYMN-DIGDEGAE 405 (597)
Q Consensus 327 ~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n-~l~~~~~~ 405 (597)
.++++|++|++++|.++.. .......+++|+.|++++|.++.. ....+..+++|++|++++| .++..
T Consensus 109 ~~l~~L~~L~L~~n~l~~~-----~~~~~~~l~~L~~L~L~~N~i~~~----~~~~~~~l~~L~~L~l~~~~~l~~i--- 176 (440)
T 3zyj_A 109 NGLANLNTLELFDNRLTTI-----PNGAFVYLSKLKELWLRNNPIESI----PSYAFNRIPSLRRLDLGELKRLSYI--- 176 (440)
T ss_dssp TTCSSCCEEECCSSCCSSC-----CTTTSCSCSSCCEEECCSCCCCEE----CTTTTTTCTTCCEEECCCCTTCCEE---
T ss_pred cCCccCCEEECCCCcCCee-----CHhHhhccccCceeeCCCCccccc----CHHHhhhCcccCEeCCCCCCCccee---
Confidence 7899999999999988753 222224567899999999998872 2345678899999999985 55442
Q ss_pred HHHHHHhcCCCccEEEccCCCCChHHHHHHHHHhhcCCCcCEEECcCCCCCHHHHHHHHHHHhhCCCcCEEecCCCCCCh
Q 007577 406 KIADALKQNRTITTIDLGGNNIHSKGASAIARVLKDNSVITSLDLAYNPIGADGAKALSEVLKFHGNINTLKLGWCQIGA 485 (597)
Q Consensus 406 ~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~ 485 (597)
-...+..+++|++|+|++|.++... .+..+++|++|+|++|.++.... ..+..+++|++|++++|+++.
T Consensus 177 -~~~~~~~l~~L~~L~L~~n~l~~~~------~~~~l~~L~~L~Ls~N~l~~~~~----~~~~~l~~L~~L~L~~n~l~~ 245 (440)
T 3zyj_A 177 -SEGAFEGLSNLRYLNLAMCNLREIP------NLTPLIKLDELDLSGNHLSAIRP----GSFQGLMHLQKLWMIQSQIQV 245 (440)
T ss_dssp -CTTTTTTCSSCCEEECTTSCCSSCC------CCTTCSSCCEEECTTSCCCEECT----TTTTTCTTCCEEECTTCCCCE
T ss_pred -CcchhhcccccCeecCCCCcCcccc------ccCCCcccCEEECCCCccCccCh----hhhccCccCCEEECCCCceeE
Confidence 1124566889999999999888632 25667899999999998876432 344567899999999999887
Q ss_pred hHHHHHHHHHhcCCCccEEEccCCCCChHHHHHHHHHHhhcCccccEEEccCCCCC-hHHHHHHHHHHH
Q 007577 486 SGAEFVADMLRYNNTISILDLRANGLRDEGAKCLAQSFKVVNEALTSIDLAFNEIR-DDGAFAIAQALK 553 (597)
Q Consensus 486 ~~~~~l~~~l~~~~~L~~L~l~~n~i~~~~~~~l~~~l~~~n~~L~~L~Ls~n~i~-~~~~~~l~~~l~ 553 (597)
..... +..+++|+.|+|++|.++......+... ++|+.|+|++|.+. +-....+..+++
T Consensus 246 ~~~~~----~~~l~~L~~L~L~~N~l~~~~~~~~~~l-----~~L~~L~L~~Np~~CdC~l~~l~~~~~ 305 (440)
T 3zyj_A 246 IERNA----FDNLQSLVEINLAHNNLTLLPHDLFTPL-----HHLERIHLHHNPWNCNCDILWLSWWIK 305 (440)
T ss_dssp ECTTS----STTCTTCCEEECTTSCCCCCCTTTTSSC-----TTCCEEECCSSCEECSSTTHHHHHHHH
T ss_pred EChhh----hcCCCCCCEEECCCCCCCccChhHhccc-----cCCCEEEcCCCCccCCCCchHHHHHHH
Confidence 65433 4456899999999998886544433332 67999999999764 223444555544
No 80
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.73 E-value=3.1e-20 Score=183.50 Aligned_cols=113 Identities=21% Similarity=0.197 Sum_probs=48.3
Q ss_pred HHcCCCCcEEEccCCCCCcHHHHHHHHHHhcCCCccEEEccCCCCChHHHHHHHHHhhcCCCcCEEECcCCCCCHHHHHH
Q 007577 383 IKNCKSLLWINLYMNDIGDEGAEKIADALKQNRTITTIDLGGNNIHSKGASAIARVLKDNSVITSLDLAYNPIGADGAKA 462 (597)
Q Consensus 383 l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~ 462 (597)
+..+++|++|++++|.++.. ....+..+++|++|++++|.++.... ..+..+++|++|++++|.++....
T Consensus 125 ~~~l~~L~~L~l~~n~l~~~----~~~~~~~l~~L~~L~l~~n~l~~~~~----~~~~~l~~L~~L~l~~n~l~~~~~-- 194 (285)
T 1ozn_A 125 FRGLAALQYLYLQDNALQAL----PDDTFRDLGNLTHLFLHGNRISSVPE----RAFRGLHSLDRLLLHQNRVAHVHP-- 194 (285)
T ss_dssp TTTCTTCCEEECCSSCCCCC----CTTTTTTCTTCCEEECCSSCCCEECT----TTTTTCTTCCEEECCSSCCCEECT--
T ss_pred hhCCcCCCEEECCCCccccc----CHhHhccCCCccEEECCCCcccccCH----HHhcCccccCEEECCCCcccccCH--
Confidence 33444455555555444432 11123334455555555554443211 112334555555555554443211
Q ss_pred HHHHHhhCCCcCEEecCCCCCChhHHHHHHHHHhcCCCccEEEccCCCC
Q 007577 463 LSEVLKFHGNINTLKLGWCQIGASGAEFVADMLRYNNTISILDLRANGL 511 (597)
Q Consensus 463 l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~n~i 511 (597)
..+..+++|++|++++|.++...... +..+++|+.|++++|.+
T Consensus 195 --~~~~~l~~L~~L~l~~n~l~~~~~~~----~~~l~~L~~L~l~~N~~ 237 (285)
T 1ozn_A 195 --HAFRDLGRLMTLYLFANNLSALPTEA----LAPLRALQYLRLNDNPW 237 (285)
T ss_dssp --TTTTTCTTCCEEECCSSCCSCCCHHH----HTTCTTCCEEECCSSCE
T ss_pred --hHccCcccccEeeCCCCcCCcCCHHH----cccCcccCEEeccCCCc
Confidence 12233345555555555554433222 23345555555555544
No 81
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.73 E-value=2.5e-20 Score=196.77 Aligned_cols=247 Identities=18% Similarity=0.125 Sum_probs=177.3
Q ss_pred cCEEEecCCCCChHHHHHHHHHHHcCCCccEEEeccCCCChhhHHHHHHHHhhCCCccEEEcCCCCCChHHHHHHHHHhh
Q 007577 248 VERLQLSSVDLRDEGAKAIAELLKNNSILRVLELNNNMIDYSGFTSLAEALLENSTIRSLHLNGNYGGALGANALAKGLE 327 (597)
Q Consensus 248 L~~L~Ls~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~ 327 (597)
...++.++..++.. +..+ .+++++|+|++|.|+... +..+..+++|+.|+|++|.++.... ..+.
T Consensus 56 ~~~v~c~~~~l~~i-----P~~~--~~~l~~L~L~~n~i~~~~----~~~~~~l~~L~~L~Ls~n~i~~~~~----~~~~ 120 (452)
T 3zyi_A 56 FSKVVCTRRGLSEV-----PQGI--PSNTRYLNLMENNIQMIQ----ADTFRHLHHLEVLQLGRNSIRQIEV----GAFN 120 (452)
T ss_dssp SCEEECCSSCCSSC-----CSCC--CTTCSEEECCSSCCCEEC----TTTTTTCTTCCEEECCSSCCCEECT----TTTT
T ss_pred CcEEEECCCCcCcc-----CCCC--CCCccEEECcCCcCceEC----HHHcCCCCCCCEEECCCCccCCcCh----hhcc
Confidence 45677776666542 2211 257999999999987532 3456678999999999999887654 4467
Q ss_pred cCCCCCEEEccCCCCChHHHHHHHHhhhcCccccceeeccCCCCChhHHHHHHHHHHcCCCCcEEEccCC-CCCcHHHHH
Q 007577 328 GNKSLRELHLHGNSIGDEGIRALMSGLSSRKGKLAVLDIGNNSISAKGAFHVAEYIKNCKSLLWINLYMN-DIGDEGAEK 406 (597)
Q Consensus 328 ~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n-~l~~~~~~~ 406 (597)
++++|++|++++|.++.. .......+++|+.|++++|.++.. ....+..+++|++|++++| .++...
T Consensus 121 ~l~~L~~L~L~~n~l~~~-----~~~~~~~l~~L~~L~L~~N~l~~~----~~~~~~~l~~L~~L~l~~~~~l~~i~--- 188 (452)
T 3zyi_A 121 GLASLNTLELFDNWLTVI-----PSGAFEYLSKLRELWLRNNPIESI----PSYAFNRVPSLMRLDLGELKKLEYIS--- 188 (452)
T ss_dssp TCTTCCEEECCSSCCSBC-----CTTTSSSCTTCCEEECCSCCCCEE----CTTTTTTCTTCCEEECCCCTTCCEEC---
T ss_pred CcccCCEEECCCCcCCcc-----ChhhhcccCCCCEEECCCCCccee----CHhHHhcCCcccEEeCCCCCCccccC---
Confidence 889999999999988753 222234567899999999998862 2335678899999999985 554421
Q ss_pred HHHHHhcCCCccEEEccCCCCChHHHHHHHHHhhcCCCcCEEECcCCCCCHHHHHHHHHHHhhCCCcCEEecCCCCCChh
Q 007577 407 IADALKQNRTITTIDLGGNNIHSKGASAIARVLKDNSVITSLDLAYNPIGADGAKALSEVLKFHGNINTLKLGWCQIGAS 486 (597)
Q Consensus 407 l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~ 486 (597)
...+..+++|++|+|++|+++... .+..+++|++|+|++|.++.... ..+..+++|++|++++|+++..
T Consensus 189 -~~~~~~l~~L~~L~L~~n~l~~~~------~~~~l~~L~~L~Ls~N~l~~~~~----~~~~~l~~L~~L~L~~n~l~~~ 257 (452)
T 3zyi_A 189 -EGAFEGLFNLKYLNLGMCNIKDMP------NLTPLVGLEELEMSGNHFPEIRP----GSFHGLSSLKKLWVMNSQVSLI 257 (452)
T ss_dssp -TTTTTTCTTCCEEECTTSCCSSCC------CCTTCTTCCEEECTTSCCSEECG----GGGTTCTTCCEEECTTSCCCEE
T ss_pred -hhhccCCCCCCEEECCCCcccccc------cccccccccEEECcCCcCcccCc----ccccCccCCCEEEeCCCcCceE
Confidence 123556789999999999887632 25667889999999998876432 3455678999999999988776
Q ss_pred HHHHHHHHHhcCCCccEEEccCCCCChHHHHHHHHHHhhcCccccEEEccCCCCC
Q 007577 487 GAEFVADMLRYNNTISILDLRANGLRDEGAKCLAQSFKVVNEALTSIDLAFNEIR 541 (597)
Q Consensus 487 ~~~~l~~~l~~~~~L~~L~l~~n~i~~~~~~~l~~~l~~~n~~L~~L~Ls~n~i~ 541 (597)
.... +..+++|+.|++++|.++......+... ++|+.|+|++|.+.
T Consensus 258 ~~~~----~~~l~~L~~L~L~~N~l~~~~~~~~~~l-----~~L~~L~L~~Np~~ 303 (452)
T 3zyi_A 258 ERNA----FDGLASLVELNLAHNNLSSLPHDLFTPL-----RYLVELHLHHNPWN 303 (452)
T ss_dssp CTTT----TTTCTTCCEEECCSSCCSCCCTTSSTTC-----TTCCEEECCSSCEE
T ss_pred CHHH----hcCCCCCCEEECCCCcCCccChHHhccc-----cCCCEEEccCCCcC
Confidence 4433 4456889999999998876544333322 67889999888764
No 82
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.73 E-value=1.1e-20 Score=188.73 Aligned_cols=38 Identities=24% Similarity=0.387 Sum_probs=17.0
Q ss_pred CCccEEEeccCCCCHHHHHHHHHHhhhCCCccEEEccCCCCC
Q 007577 190 QTAEEVSFAANGITAAGIKAFDGVLQSNIALKTLNLSGNPIG 231 (597)
Q Consensus 190 ~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~ 231 (597)
++|++|++++|.++... ...+..+++|++|++++|.++
T Consensus 28 ~~l~~L~L~~n~l~~i~----~~~~~~l~~L~~L~L~~n~l~ 65 (306)
T 2z66_A 28 SSATRLELESNKLQSLP----HGVFDKLTQLTKLSLSSNGLS 65 (306)
T ss_dssp TTCCEEECCSSCCCCCC----TTTTTTCTTCSEEECCSSCCC
T ss_pred CCCCEEECCCCccCccC----HhHhhccccCCEEECCCCccC
Confidence 35555555555544211 112234445555555555444
No 83
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.73 E-value=5.3e-20 Score=181.87 Aligned_cols=218 Identities=18% Similarity=0.143 Sum_probs=148.1
Q ss_pred CCccEEEcCCCCCChHHHHHHHHHhhcCCCCCEEEccCCCCChHHHHHHHHhhhcCccccceeeccCCC-CChhHHHHHH
Q 007577 302 STIRSLHLNGNYGGALGANALAKGLEGNKSLRELHLHGNSIGDEGIRALMSGLSSRKGKLAVLDIGNNS-ISAKGAFHVA 380 (597)
Q Consensus 302 ~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~Ls~n~-l~~~~~~~l~ 380 (597)
++|++|++++|.++.... ..+..+++|++|++++|.+++.....+ ..+++|+.|++++|. ++.. .+
T Consensus 32 ~~l~~L~l~~n~i~~~~~----~~~~~~~~L~~L~l~~n~l~~~~~~~~-----~~l~~L~~L~l~~n~~l~~~----~~ 98 (285)
T 1ozn_A 32 AASQRIFLHGNRISHVPA----ASFRACRNLTILWLHSNVLARIDAAAF-----TGLALLEQLDLSDNAQLRSV----DP 98 (285)
T ss_dssp TTCSEEECTTSCCCEECT----TTTTTCTTCCEEECCSSCCCEECTTTT-----TTCTTCCEEECCSCTTCCCC----CT
T ss_pred CCceEEEeeCCcCCccCH----HHcccCCCCCEEECCCCccceeCHhhc-----CCccCCCEEeCCCCCCcccc----CH
Confidence 466666666666655433 234566777777777777665321111 344577788887775 5552 23
Q ss_pred HHHHcCCCCcEEEccCCCCCcHHHHHHHHHHhcCCCccEEEccCCCCChHHHHHHHHHhhcCCCcCEEECcCCCCCHHHH
Q 007577 381 EYIKNCKSLLWINLYMNDIGDEGAEKIADALKQNRTITTIDLGGNNIHSKGASAIARVLKDNSVITSLDLAYNPIGADGA 460 (597)
Q Consensus 381 ~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~ 460 (597)
..+..+++|++|++++|.++.. .+..+..+++|++|++++|.++.... ..+..+++|++|++++|.++....
T Consensus 99 ~~~~~l~~L~~L~l~~n~l~~~----~~~~~~~l~~L~~L~l~~n~l~~~~~----~~~~~l~~L~~L~l~~n~l~~~~~ 170 (285)
T 1ozn_A 99 ATFHGLGRLHTLHLDRCGLQEL----GPGLFRGLAALQYLYLQDNALQALPD----DTFRDLGNLTHLFLHGNRISSVPE 170 (285)
T ss_dssp TTTTTCTTCCEEECTTSCCCCC----CTTTTTTCTTCCEEECCSSCCCCCCT----TTTTTCTTCCEEECCSSCCCEECT
T ss_pred HHhcCCcCCCEEECCCCcCCEE----CHhHhhCCcCCCEEECCCCcccccCH----hHhccCCCccEEECCCCcccccCH
Confidence 4567788899999999988763 23446678899999999998876422 235567899999999998875422
Q ss_pred HHHHHHHhhCCCcCEEecCCCCCChhHHHHHHHHHhcCCCccEEEccCCCCChHHHHHHHHHHhhcCccccEEEccCCCC
Q 007577 461 KALSEVLKFHGNINTLKLGWCQIGASGAEFVADMLRYNNTISILDLRANGLRDEGAKCLAQSFKVVNEALTSIDLAFNEI 540 (597)
Q Consensus 461 ~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~n~i~~~~~~~l~~~l~~~n~~L~~L~Ls~n~i 540 (597)
..+..+++|++|++++|.++...+.. +..+++|+.|++++|.+++.....+... ++|+.|++++|.+
T Consensus 171 ----~~~~~l~~L~~L~l~~n~l~~~~~~~----~~~l~~L~~L~l~~n~l~~~~~~~~~~l-----~~L~~L~l~~N~~ 237 (285)
T 1ozn_A 171 ----RAFRGLHSLDRLLLHQNRVAHVHPHA----FRDLGRLMTLYLFANNLSALPTEALAPL-----RALQYLRLNDNPW 237 (285)
T ss_dssp ----TTTTTCTTCCEEECCSSCCCEECTTT----TTTCTTCCEEECCSSCCSCCCHHHHTTC-----TTCCEEECCSSCE
T ss_pred ----HHhcCccccCEEECCCCcccccCHhH----ccCcccccEeeCCCCcCCcCCHHHcccC-----cccCEEeccCCCc
Confidence 23455689999999999988764433 4456899999999998887665555443 7799999999987
Q ss_pred Ch-HHHHHHHHHHH
Q 007577 541 RD-DGAFAIAQALK 553 (597)
Q Consensus 541 ~~-~~~~~l~~~l~ 553 (597)
.. .....+..+++
T Consensus 238 ~c~~~~~~~~~~l~ 251 (285)
T 1ozn_A 238 VCDCRARPLWAWLQ 251 (285)
T ss_dssp ECSGGGHHHHHHHH
T ss_pred cCCCCcHHHHHHHH
Confidence 52 33334445533
No 84
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.72 E-value=7.1e-19 Score=186.92 Aligned_cols=218 Identities=18% Similarity=0.150 Sum_probs=143.2
Q ss_pred CCCccEEEeccCCCCHHHHHHHHHHhhhCCCccEEEccCCCCChhHHHHHHHHHhcCCCcCEEEecCCCCChHHHHHHHH
Q 007577 189 NQTAEEVSFAANGITAAGIKAFDGVLQSNIALKTLNLSGNPIGDEGVKCLCDILVDNAGVERLQLSSVDLRDEGAKAIAE 268 (597)
Q Consensus 189 ~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~~~l~~~~~~~l~~ 268 (597)
+++|+.|+|++|.++... +..+..+++|++|+|++|.++.... +..+++|++|+|++|.+++..
T Consensus 33 ~~~L~~L~Ls~n~l~~~~----~~~~~~l~~L~~L~Ls~N~l~~~~~------l~~l~~L~~L~Ls~N~l~~l~------ 96 (487)
T 3oja_A 33 AWNVKELDLSGNPLSQIS----AADLAPFTKLELLNLSSNVLYETLD------LESLSTLRTLDLNNNYVQELL------ 96 (487)
T ss_dssp GGGCCEEECCSSCCCCCC----GGGGTTCTTCCEEECTTSCCEEEEE------CTTCTTCCEEECCSSEEEEEE------
T ss_pred CCCccEEEeeCCcCCCCC----HHHHhCCCCCCEEEeeCCCCCCCcc------cccCCCCCEEEecCCcCCCCC------
Confidence 447888888888876532 2345667788888888888765321 455688888888888776531
Q ss_pred HHHcCCCccEEEeccCCCChhhHHHHHHHHhhCCCccEEEcCCCCCChHHHHHHHHHhhcCCCCCEEEccCCCCChHHHH
Q 007577 269 LLKNNSILRVLELNNNMIDYSGFTSLAEALLENSTIRSLHLNGNYGGALGANALAKGLEGNKSLRELHLHGNSIGDEGIR 348 (597)
Q Consensus 269 ~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~ 348 (597)
..++|++|++++|.++.... ..+++|+.|++++|.++.... ..+..+++|+.|++++|.+++....
T Consensus 97 ---~~~~L~~L~L~~N~l~~~~~-------~~l~~L~~L~L~~N~l~~~~~----~~~~~l~~L~~L~Ls~N~l~~~~~~ 162 (487)
T 3oja_A 97 ---VGPSIETLHAANNNISRVSC-------SRGQGKKNIYLANNKITMLRD----LDEGCRSRVQYLDLKLNEIDTVNFA 162 (487)
T ss_dssp ---ECTTCCEEECCSSCCCCEEE-------CCCSSCEEEECCSSCCCSGGG----BCGGGGSSEEEEECTTSCCCEEEGG
T ss_pred ---CCCCcCEEECcCCcCCCCCc-------cccCCCCEEECCCCCCCCCCc----hhhcCCCCCCEEECCCCCCCCcChH
Confidence 23678888888888764321 135678888888887766433 2345677788888888877664222
Q ss_pred HHHHhhhcCccccceeeccCCCCChhHHHHHHHHHHcCCCCcEEEccCCCCCcHHHHHHHHHHhcCCCccEEEccCCCCC
Q 007577 349 ALMSGLSSRKGKLAVLDIGNNSISAKGAFHVAEYIKNCKSLLWINLYMNDIGDEGAEKIADALKQNRTITTIDLGGNNIH 428 (597)
Q Consensus 349 ~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~ 428 (597)
.+...+++|+.|+|++|.++.. ..+..+++|++|+|++|.+++ ++..+..+++|++|+|++|.|+
T Consensus 163 ----~l~~~l~~L~~L~Ls~N~l~~~------~~~~~l~~L~~L~Ls~N~l~~-----~~~~~~~l~~L~~L~Ls~N~l~ 227 (487)
T 3oja_A 163 ----ELAASSDTLEHLNLQYNFIYDV------KGQVVFAKLKTLDLSSNKLAF-----MGPEFQSAAGVTWISLRNNKLV 227 (487)
T ss_dssp ----GGGGGTTTCCEEECTTSCCCEE------ECCCCCTTCCEEECCSSCCCE-----ECGGGGGGTTCSEEECTTSCCC
T ss_pred ----HHhhhCCcccEEecCCCccccc------cccccCCCCCEEECCCCCCCC-----CCHhHcCCCCccEEEecCCcCc
Confidence 2222345777888888777762 112346777777777777775 2233556677777777777777
Q ss_pred hHHHHHHHHHhhcCCCcCEEECcCCCCC
Q 007577 429 SKGASAIARVLKDNSVITSLDLAYNPIG 456 (597)
Q Consensus 429 ~~~~~~l~~~l~~~~~L~~L~Ls~n~i~ 456 (597)
. ++..+..+++|+.|++++|++.
T Consensus 228 ~-----lp~~l~~l~~L~~L~l~~N~l~ 250 (487)
T 3oja_A 228 L-----IEKALRFSQNLEHFDLRGNGFH 250 (487)
T ss_dssp E-----ECTTCCCCTTCCEEECTTCCBC
T ss_pred c-----cchhhccCCCCCEEEcCCCCCc
Confidence 5 3334555677777777777776
No 85
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.71 E-value=1.1e-17 Score=166.87 Aligned_cols=169 Identities=21% Similarity=0.249 Sum_probs=85.6
Q ss_pred CCcCEEEecCCCCChHHHHHHHHHHHcCCCccEEEeccCCCChhhHHHHHHHHhhCCCccEEEcCCCCCChHHHHHHHHH
Q 007577 246 AGVERLQLSSVDLRDEGAKAIAELLKNNSILRVLELNNNMIDYSGFTSLAEALLENSTIRSLHLNGNYGGALGANALAKG 325 (597)
Q Consensus 246 ~~L~~L~Ls~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~ 325 (597)
++|++|++++|.+++. . .+..+++|++|++++|.+++.. . +..+++|++|++++|.++... .
T Consensus 41 ~~L~~L~l~~~~i~~l-----~-~~~~l~~L~~L~L~~n~i~~~~-----~-~~~l~~L~~L~L~~n~l~~~~------~ 102 (308)
T 1h6u_A 41 DGITTLSAFGTGVTTI-----E-GVQYLNNLIGLELKDNQITDLA-----P-LKNLTKITELELSGNPLKNVS------A 102 (308)
T ss_dssp HTCCEEECTTSCCCCC-----T-TGGGCTTCCEEECCSSCCCCCG-----G-GTTCCSCCEEECCSCCCSCCG------G
T ss_pred CCcCEEEeeCCCccCc-----h-hhhccCCCCEEEccCCcCCCCh-----h-HccCCCCCEEEccCCcCCCch------h
Confidence 5667777777766652 1 2344566666666666665422 1 445566666666666655432 2
Q ss_pred hhcCCCCCEEEccCCCCChHHHHHHHHhhhcCccccceeeccCCCCChhHHHHHHHHHHcCCCCcEEEccCCCCCcHHHH
Q 007577 326 LEGNKSLRELHLHGNSIGDEGIRALMSGLSSRKGKLAVLDIGNNSISAKGAFHVAEYIKNCKSLLWINLYMNDIGDEGAE 405 (597)
Q Consensus 326 l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~ 405 (597)
+..+++|++|++++|.+++.. . ...+++|+.|++++|.++.. +. +..+++|++|++++|.+++.
T Consensus 103 ~~~l~~L~~L~l~~n~l~~~~--~-----l~~l~~L~~L~l~~n~l~~~-----~~-l~~l~~L~~L~l~~n~l~~~--- 166 (308)
T 1h6u_A 103 IAGLQSIKTLDLTSTQITDVT--P-----LAGLSNLQVLYLDLNQITNI-----SP-LAGLTNLQYLSIGNAQVSDL--- 166 (308)
T ss_dssp GTTCTTCCEEECTTSCCCCCG--G-----GTTCTTCCEEECCSSCCCCC-----GG-GGGCTTCCEEECCSSCCCCC---
T ss_pred hcCCCCCCEEECCCCCCCCch--h-----hcCCCCCCEEECCCCccCcC-----cc-ccCCCCccEEEccCCcCCCC---
Confidence 445566666666666554421 0 12334555555555555542 11 44455555555555555442
Q ss_pred HHHHHHhcCCCccEEEccCCCCChHHHHHHHHHhhcCCCcCEEECcCCCCCH
Q 007577 406 KIADALKQNRTITTIDLGGNNIHSKGASAIARVLKDNSVITSLDLAYNPIGA 457 (597)
Q Consensus 406 ~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~ 457 (597)
.. +..+++|++|++++|.+++... +..+++|++|++++|++++
T Consensus 167 --~~-l~~l~~L~~L~l~~n~l~~~~~------l~~l~~L~~L~L~~N~l~~ 209 (308)
T 1h6u_A 167 --TP-LANLSKLTTLKADDNKISDISP------LASLPNLIEVHLKNNQISD 209 (308)
T ss_dssp --GG-GTTCTTCCEEECCSSCCCCCGG------GGGCTTCCEEECTTSCCCB
T ss_pred --hh-hcCCCCCCEEECCCCccCcChh------hcCCCCCCEEEccCCccCc
Confidence 11 3344555555555555444211 3334445555555554443
No 86
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.70 E-value=7.5e-18 Score=168.18 Aligned_cols=191 Identities=18% Similarity=0.209 Sum_probs=138.9
Q ss_pred CCccEEEeccCCCChhhHHHHHHHHhhCCCccEEEcCCCCCChHHHHHHHHHhhcCCCCCEEEccCCCCChHHHHHHHHh
Q 007577 274 SILRVLELNNNMIDYSGFTSLAEALLENSTIRSLHLNGNYGGALGANALAKGLEGNKSLRELHLHGNSIGDEGIRALMSG 353 (597)
Q Consensus 274 ~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~ 353 (597)
++|++|++++|.++.- + .+..+++|++|++++|.++.... +..+++|++|++++|.+++.. .
T Consensus 41 ~~L~~L~l~~~~i~~l-----~-~~~~l~~L~~L~L~~n~i~~~~~------~~~l~~L~~L~L~~n~l~~~~------~ 102 (308)
T 1h6u_A 41 DGITTLSAFGTGVTTI-----E-GVQYLNNLIGLELKDNQITDLAP------LKNLTKITELELSGNPLKNVS------A 102 (308)
T ss_dssp HTCCEEECTTSCCCCC-----T-TGGGCTTCCEEECCSSCCCCCGG------GTTCCSCCEEECCSCCCSCCG------G
T ss_pred CCcCEEEeeCCCccCc-----h-hhhccCCCCEEEccCCcCCCChh------HccCCCCCEEEccCCcCCCch------h
Confidence 6788899988888642 1 35678888888888888876543 667888888888888877631 1
Q ss_pred hhcCccccceeeccCCCCChhHHHHHHHHHHcCCCCcEEEccCCCCCcHHHHHHHHHHhcCCCccEEEccCCCCChHHHH
Q 007577 354 LSSRKGKLAVLDIGNNSISAKGAFHVAEYIKNCKSLLWINLYMNDIGDEGAEKIADALKQNRTITTIDLGGNNIHSKGAS 433 (597)
Q Consensus 354 l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~ 433 (597)
+ ..+++|+.|++++|.++.. + .+..+++|++|++++|.+++.. .+..+++|++|++++|.+++...
T Consensus 103 ~-~~l~~L~~L~l~~n~l~~~-----~-~l~~l~~L~~L~l~~n~l~~~~------~l~~l~~L~~L~l~~n~l~~~~~- 168 (308)
T 1h6u_A 103 I-AGLQSIKTLDLTSTQITDV-----T-PLAGLSNLQVLYLDLNQITNIS------PLAGLTNLQYLSIGNAQVSDLTP- 168 (308)
T ss_dssp G-TTCTTCCEEECTTSCCCCC-----G-GGTTCTTCCEEECCSSCCCCCG------GGGGCTTCCEEECCSSCCCCCGG-
T ss_pred h-cCCCCCCEEECCCCCCCCc-----h-hhcCCCCCCEEECCCCccCcCc------cccCCCCccEEEccCCcCCCChh-
Confidence 2 3456788888888888772 2 2677888888888888877632 16667888888888888876321
Q ss_pred HHHHHhhcCCCcCEEECcCCCCCHHHHHHHHHHHhhCCCcCEEecCCCCCChhHHHHHHHHHhcCCCccEEEccCCCCCh
Q 007577 434 AIARVLKDNSVITSLDLAYNPIGADGAKALSEVLKFHGNINTLKLGWCQIGASGAEFVADMLRYNNTISILDLRANGLRD 513 (597)
Q Consensus 434 ~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~n~i~~ 513 (597)
+..+++|++|++++|.+++... +..+++|++|++++|.+++... +..+++|+.|++++|.++.
T Consensus 169 -----l~~l~~L~~L~l~~n~l~~~~~------l~~l~~L~~L~L~~N~l~~~~~------l~~l~~L~~L~l~~N~i~~ 231 (308)
T 1h6u_A 169 -----LANLSKLTTLKADDNKISDISP------LASLPNLIEVHLKNNQISDVSP------LANTSNLFIVTLTNQTITN 231 (308)
T ss_dssp -----GTTCTTCCEEECCSSCCCCCGG------GGGCTTCCEEECTTSCCCBCGG------GTTCTTCCEEEEEEEEEEC
T ss_pred -----hcCCCCCCEEECCCCccCcChh------hcCCCCCCEEEccCCccCcccc------ccCCCCCCEEEccCCeeec
Confidence 5667888888888887765432 5567788888888888776541 4567888888888887654
No 87
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=99.68 E-value=1.6e-15 Score=137.60 Aligned_cols=135 Identities=15% Similarity=0.217 Sum_probs=81.5
Q ss_pred HHHHHhhcCCCcCEEECcCC-CCCHHHHHHHHHHHhhCCCcCEEecCCCCCChhHHHHHHHHHhcCCCccEEEccCCCCC
Q 007577 434 AIARVLKDNSVITSLDLAYN-PIGADGAKALSEVLKFHGNINTLKLGWCQIGASGAEFVADMLRYNNTISILDLRANGLR 512 (597)
Q Consensus 434 ~l~~~l~~~~~L~~L~Ls~n-~i~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~n~i~ 512 (597)
.+...+.+.+.|++|+|++| .|++++...+.+.++.++.|++|+|++|+|++.+...++.+++.+++|++|+|++|.|+
T Consensus 32 ~l~~ll~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig 111 (197)
T 1pgv_A 32 CINRLREDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLT 111 (197)
T ss_dssp HHHHHHTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCC
T ss_pred HHHHHHhcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCC
Confidence 34445555556666666653 66666666666666666666666666666666666666666666666666666666666
Q ss_pred hHHHHHHHHHHhhcCccccEEEccCC---CCChHHHHHHHHHHHhCCCCceeEEEcccCccc
Q 007577 513 DEGAKCLAQSFKVVNEALTSIDLAFN---EIRDDGAFAIAQALKANEDVAVTSLNLANNFLT 571 (597)
Q Consensus 513 ~~~~~~l~~~l~~~n~~L~~L~Ls~n---~i~~~~~~~l~~~l~~~~~~~L~~L~L~~N~i~ 571 (597)
+.|...++++++. |++|++|+|++| .|++.+...|+.+++.|+. |++|+++.|.+.
T Consensus 112 ~~Ga~ala~aL~~-N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~t--L~~L~l~~~~~g 170 (197)
T 1pgv_A 112 PELLARLLRSTLV-TQSIVEFKADNQRQSVLGNQVEMDMMMAIEENES--LLRVGISFASME 170 (197)
T ss_dssp HHHHHHHHHHTTT-TCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSS--CCEEECCCCCHH
T ss_pred HHHHHHHHHHHhh-CCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCC--cCeEeccCCCcc
Confidence 6666666666542 455666666543 4566666666666666655 666666655443
No 88
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=99.66 E-value=1.7e-15 Score=137.51 Aligned_cols=131 Identities=11% Similarity=0.115 Sum_probs=68.9
Q ss_pred HHHHHcCCCCcEEEccCC-CCCcHHHHHHHHHHhcCCCccEEEccCCCCChHHHHHHHHHhhcCCCcCEEECcCCCCCHH
Q 007577 380 AEYIKNCKSLLWINLYMN-DIGDEGAEKIADALKQNRTITTIDLGGNNIHSKGASAIARVLKDNSVITSLDLAYNPIGAD 458 (597)
Q Consensus 380 ~~~l~~~~~L~~L~Ls~n-~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~ 458 (597)
...+...+.|++|+|++| .|+++|+..+++++..++.|++|+|++|.|++.+..++++.|..++.|++|+|++|.|++.
T Consensus 34 ~~ll~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~ 113 (197)
T 1pgv_A 34 NRLREDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPE 113 (197)
T ss_dssp HHHHTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHH
T ss_pred HHHHhcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHH
Confidence 333444455555555553 5555555555555555555555555555555555555555555555555555555555555
Q ss_pred HHHHHHHHHhhCCCcCEEecCCC---CCChhHHHHHHHHHhcCCCccEEEccCCC
Q 007577 459 GAKALSEVLKFHGNINTLKLGWC---QIGASGAEFVADMLRYNNTISILDLRANG 510 (597)
Q Consensus 459 ~~~~l~~~l~~~~~L~~L~L~~n---~i~~~~~~~l~~~l~~~~~L~~L~l~~n~ 510 (597)
|...+.+.++.++.|++|+|++| .+++.+...++.++..+++|+.|+++.|.
T Consensus 114 Ga~ala~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~~ 168 (197)
T 1pgv_A 114 LLARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFAS 168 (197)
T ss_dssp HHHHHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCC
T ss_pred HHHHHHHHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCCC
Confidence 55555555555555555555432 34555545555555555555555554443
No 89
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.65 E-value=7.4e-18 Score=166.57 Aligned_cols=176 Identities=22% Similarity=0.210 Sum_probs=79.9
Q ss_pred CccEEEccCCCCChhHHHHHHHHHhcCCCcCEEEecCCCCChHHHHHHHHHHHcCCCccEEEeccCCCChhhHHHHHHHH
Q 007577 219 ALKTLNLSGNPIGDEGVKCLCDILVDNAGVERLQLSSVDLRDEGAKAIAELLKNNSILRVLELNNNMIDYSGFTSLAEAL 298 (597)
Q Consensus 219 ~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l 298 (597)
+++.|++++|.++.... ..+..+++|++|++++|.++.... ...+++|++|++++|+++. ++..+
T Consensus 32 ~l~~L~L~~N~l~~~~~----~~~~~l~~L~~L~L~~n~l~~~~~------~~~l~~L~~L~Ls~N~l~~-----l~~~~ 96 (290)
T 1p9a_G 32 DTTILHLSENLLYTFSL----ATLMPYTRLTQLNLDRAELTKLQV------DGTLPVLGTLDLSHNQLQS-----LPLLG 96 (290)
T ss_dssp TCCEEECTTSCCSEEEG----GGGTTCTTCCEEECTTSCCCEEEC------CSCCTTCCEEECCSSCCSS-----CCCCT
T ss_pred CCCEEEcCCCcCCccCH----HHhhcCCCCCEEECCCCccCcccC------CCCCCcCCEEECCCCcCCc-----Cchhh
Confidence 45555555555544321 222334555555555555544211 0234555555555555531 22223
Q ss_pred hhCCCccEEEcCCCCCChHHHHHHHHHhhcCCCCCEEEccCCCCChHHHHHHHHhhhcCccccceeeccCCCCChhHHHH
Q 007577 299 LENSTIRSLHLNGNYGGALGANALAKGLEGNKSLRELHLHGNSIGDEGIRALMSGLSSRKGKLAVLDIGNNSISAKGAFH 378 (597)
Q Consensus 299 ~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~ 378 (597)
..+++|++|++++|.++.... ..+..+++|++|++++|.++.. .......+++|+.|++++|.++..
T Consensus 97 ~~l~~L~~L~l~~N~l~~l~~----~~~~~l~~L~~L~L~~N~l~~~-----~~~~~~~l~~L~~L~L~~N~l~~l---- 163 (290)
T 1p9a_G 97 QTLPALTVLDVSFNRLTSLPL----GALRGLGELQELYLKGNELKTL-----PPGLLTPTPKLEKLSLANNNLTEL---- 163 (290)
T ss_dssp TTCTTCCEEECCSSCCCCCCS----STTTTCTTCCEEECTTSCCCCC-----CTTTTTTCTTCCEEECTTSCCSCC----
T ss_pred ccCCCCCEEECCCCcCcccCH----HHHcCCCCCCEEECCCCCCCcc-----ChhhcccccCCCEEECCCCcCCcc----
Confidence 344555555555555543322 2234455555555555555431 111112333555555555555441
Q ss_pred HHHHHHcCCCCcEEEccCCCCCcHHHHHHHHHHhcCCCccEEEccCCCC
Q 007577 379 VAEYIKNCKSLLWINLYMNDIGDEGAEKIADALKQNRTITTIDLGGNNI 427 (597)
Q Consensus 379 l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l 427 (597)
....+..+++|++|+|++|.++. ++..+..++.|++|+|++|.+
T Consensus 164 ~~~~~~~l~~L~~L~L~~N~l~~-----ip~~~~~~~~L~~l~L~~Np~ 207 (290)
T 1p9a_G 164 PAGLLNGLENLDTLLLQENSLYT-----IPKGFFGSHLLPFAFLHGNPW 207 (290)
T ss_dssp CTTTTTTCTTCCEEECCSSCCCC-----CCTTTTTTCCCSEEECCSCCB
T ss_pred CHHHhcCcCCCCEEECCCCcCCc-----cChhhcccccCCeEEeCCCCc
Confidence 11223344555555555555543 223333344455555555543
No 90
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.64 E-value=7.6e-18 Score=165.50 Aligned_cols=43 Identities=23% Similarity=0.269 Sum_probs=18.3
Q ss_pred HcCCCCcEEEccCCCCCcHHHHHHHHHHhcCCCccEEEccCCCCCh
Q 007577 384 KNCKSLLWINLYMNDIGDEGAEKIADALKQNRTITTIDLGGNNIHS 429 (597)
Q Consensus 384 ~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~ 429 (597)
..+++|++|++++|.+++.. ++..+..+++|++|++++|.++.
T Consensus 121 ~~l~~L~~L~l~~n~l~~~~---l~~~~~~l~~L~~L~Ls~N~l~~ 163 (276)
T 2z62_A 121 GHLKTLKELNVAHNLIQSFK---LPEYFSNLTNLEHLDLSSNKIQS 163 (276)
T ss_dssp TTCTTCCEEECCSSCCCCCC---CCGGGGGCTTCCEEECCSSCCCE
T ss_pred ccCCCCCEEECcCCccceec---CchhhccCCCCCEEECCCCCCCc
Confidence 33444555555544443310 12233344445555555544443
No 91
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.64 E-value=3e-18 Score=168.37 Aligned_cols=209 Identities=17% Similarity=0.108 Sum_probs=117.3
Q ss_pred CccEEEcCCCCCChHHHHHHHHHhhcCCCCCEEEccCCCCChHHHHHHHHhhhcCccccceeeccCCCCChhHHHHHHHH
Q 007577 303 TIRSLHLNGNYGGALGANALAKGLEGNKSLRELHLHGNSIGDEGIRALMSGLSSRKGKLAVLDIGNNSISAKGAFHVAEY 382 (597)
Q Consensus 303 ~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~ 382 (597)
+|++|++++|.++.... ..+.++++|++|++++|.++..... ....+++|+.|++++|.++.. .+..
T Consensus 29 ~l~~L~ls~n~l~~~~~----~~~~~l~~L~~L~l~~n~l~~~~~~-----~~~~l~~L~~L~L~~n~l~~~----~~~~ 95 (276)
T 2z62_A 29 STKNLDLSFNPLRHLGS----YSFFSFPELQVLDLSRCEIQTIEDG-----AYQSLSHLSTLILTGNPIQSL----ALGA 95 (276)
T ss_dssp TCCEEECTTCCCCEECT----TTTTTCTTCSEEECTTCCCCEECTT-----TTTTCTTCCEEECTTCCCCEE----CTTT
T ss_pred CccEEECCCCcccccCH----hHhccccCCcEEECCCCcCCccCHH-----HccCCcCCCEEECCCCccCcc----Chhh
Confidence 46666666665554432 2344566666666666666542111 113344677777777766652 2234
Q ss_pred HHcCCCCcEEEccCCCCCcHHHHHHHHHHhcCCCccEEEccCCCCChHHHHHHHHHhhcCCCcCEEECcCCCCCHHHHHH
Q 007577 383 IKNCKSLLWINLYMNDIGDEGAEKIADALKQNRTITTIDLGGNNIHSKGASAIARVLKDNSVITSLDLAYNPIGADGAKA 462 (597)
Q Consensus 383 l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~ 462 (597)
+..+++|++|++++|.++... ...+..+++|++|++++|.++... ++..+..+++|++|++++|.++......
T Consensus 96 ~~~l~~L~~L~l~~n~l~~~~----~~~~~~l~~L~~L~l~~n~l~~~~---l~~~~~~l~~L~~L~Ls~N~l~~~~~~~ 168 (276)
T 2z62_A 96 FSGLSSLQKLVAVETNLASLE----NFPIGHLKTLKELNVAHNLIQSFK---LPEYFSNLTNLEHLDLSSNKIQSIYCTD 168 (276)
T ss_dssp TTTCTTCCEEECTTSCCCCST----TCCCTTCTTCCEEECCSSCCCCCC---CCGGGGGCTTCCEEECCSSCCCEECGGG
T ss_pred hcCCccccEEECCCCCccccC----chhcccCCCCCEEECcCCccceec---CchhhccCCCCCEEECCCCCCCcCCHHH
Confidence 566777777777777766531 112455677888888888776522 2234555677777787777776543332
Q ss_pred HHHHHhhCCCcC-EEecCCCCCChhHHHHHHHHHhcCCCccEEEccCCCCChHHHHHHHHHHhhcCccccEEEccCCCCC
Q 007577 463 LSEVLKFHGNIN-TLKLGWCQIGASGAEFVADMLRYNNTISILDLRANGLRDEGAKCLAQSFKVVNEALTSIDLAFNEIR 541 (597)
Q Consensus 463 l~~~l~~~~~L~-~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~n~i~~~~~~~l~~~l~~~n~~L~~L~Ls~n~i~ 541 (597)
+... ...+.|. +|++++|.++......+ ...+|++|++++|.++......+... ++|++|++++|.+.
T Consensus 169 ~~~l-~~L~~l~l~L~ls~n~l~~~~~~~~-----~~~~L~~L~L~~n~l~~~~~~~~~~l-----~~L~~L~l~~N~~~ 237 (276)
T 2z62_A 169 LRVL-HQMPLLNLSLDLSLNPMNFIQPGAF-----KEIRLKELALDTNQLKSVPDGIFDRL-----TSLQKIWLHTNPWD 237 (276)
T ss_dssp GHHH-HTCTTCCEEEECCSSCCCEECTTSS-----CSCCEEEEECCSSCCSCCCTTTTTTC-----CSCCEEECCSSCBC
T ss_pred hhhh-hhccccceeeecCCCcccccCcccc-----CCCcccEEECCCCceeecCHhHhccc-----ccccEEEccCCccc
Confidence 3222 2223333 67777777765432211 22467777777777665433222222 56777777777665
Q ss_pred h
Q 007577 542 D 542 (597)
Q Consensus 542 ~ 542 (597)
.
T Consensus 238 c 238 (276)
T 2z62_A 238 C 238 (276)
T ss_dssp C
T ss_pred c
Confidence 3
No 92
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.63 E-value=2.3e-17 Score=163.09 Aligned_cols=217 Identities=20% Similarity=0.157 Sum_probs=166.0
Q ss_pred hcCCCcEEEcCCCCCCHHHHHHHHHHhccCCCccEEEeccCCCCHHHHHHHHHHhhhCCCccEEEccCCCCChhHHHHHH
Q 007577 160 ELRAFSSVDMSGRNFGDEGLFFLAESLGYNQTAEEVSFAANGITAAGIKAFDGVLQSNIALKTLNLSGNPIGDEGVKCLC 239 (597)
Q Consensus 160 ~~~~L~~L~Ls~~~l~~~~~~~l~~~l~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~ 239 (597)
.++++++++++++.++.. +..+ .++++.|++++|.++... ...+..+++|++|++++|.++.....
T Consensus 8 ~l~~l~~l~~~~~~l~~i-----p~~~--~~~l~~L~L~~N~l~~~~----~~~~~~l~~L~~L~L~~n~l~~~~~~--- 73 (290)
T 1p9a_G 8 KVASHLEVNCDKRNLTAL-----PPDL--PKDTTILHLSENLLYTFS----LATLMPYTRLTQLNLDRAELTKLQVD--- 73 (290)
T ss_dssp CSTTCCEEECTTSCCSSC-----CSCC--CTTCCEEECTTSCCSEEE----GGGGTTCTTCCEEECTTSCCCEEECC---
T ss_pred ccCCccEEECCCCCCCcC-----CCCC--CCCCCEEEcCCCcCCccC----HHHhhcCCCCCEEECCCCccCcccCC---
Confidence 467899999999988752 2222 368999999999987543 23456789999999999999865321
Q ss_pred HHHhcCCCcCEEEecCCCCChHHHHHHHHHHHcCCCccEEEeccCCCChhhHHHHHHHHhhCCCccEEEcCCCCCChHHH
Q 007577 240 DILVDNAGVERLQLSSVDLRDEGAKAIAELLKNNSILRVLELNNNMIDYSGFTSLAEALLENSTIRSLHLNGNYGGALGA 319 (597)
Q Consensus 240 ~~l~~~~~L~~L~Ls~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~ 319 (597)
..+++|++|++++|.++. ++..+..+++|++|++++|+++... +..+..+++|++|++++|.++....
T Consensus 74 ---~~l~~L~~L~Ls~N~l~~-----l~~~~~~l~~L~~L~l~~N~l~~l~----~~~~~~l~~L~~L~L~~N~l~~~~~ 141 (290)
T 1p9a_G 74 ---GTLPVLGTLDLSHNQLQS-----LPLLGQTLPALTVLDVSFNRLTSLP----LGALRGLGELQELYLKGNELKTLPP 141 (290)
T ss_dssp ---SCCTTCCEEECCSSCCSS-----CCCCTTTCTTCCEEECCSSCCCCCC----SSTTTTCTTCCEEECTTSCCCCCCT
T ss_pred ---CCCCcCCEEECCCCcCCc-----CchhhccCCCCCEEECCCCcCcccC----HHHHcCCCCCCEEECCCCCCCccCh
Confidence 457999999999999885 4445567789999999999986422 2446678999999999999886554
Q ss_pred HHHHHHhhcCCCCCEEEccCCCCChHHHHHHHHhhhcCccccceeeccCCCCChhHHHHHHHHHHcCCCCcEEEccCCCC
Q 007577 320 NALAKGLEGNKSLRELHLHGNSIGDEGIRALMSGLSSRKGKLAVLDIGNNSISAKGAFHVAEYIKNCKSLLWINLYMNDI 399 (597)
Q Consensus 320 ~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l 399 (597)
..+..+++|+.|++++|.++. +.......+++|+.|++++|.++. ++..+...++|++|+|++|.+
T Consensus 142 ----~~~~~l~~L~~L~L~~N~l~~-----l~~~~~~~l~~L~~L~L~~N~l~~-----ip~~~~~~~~L~~l~L~~Np~ 207 (290)
T 1p9a_G 142 ----GLLTPTPKLEKLSLANNNLTE-----LPAGLLNGLENLDTLLLQENSLYT-----IPKGFFGSHLLPFAFLHGNPW 207 (290)
T ss_dssp ----TTTTTCTTCCEEECTTSCCSC-----CCTTTTTTCTTCCEEECCSSCCCC-----CCTTTTTTCCCSEEECCSCCB
T ss_pred ----hhcccccCCCEEECCCCcCCc-----cCHHHhcCcCCCCEEECCCCcCCc-----cChhhcccccCCeEEeCCCCc
Confidence 345678999999999999875 333333556799999999999986 666677788999999999977
Q ss_pred C-cHHHHHHHHHHhcCCC
Q 007577 400 G-DEGAEKIADALKQNRT 416 (597)
Q Consensus 400 ~-~~~~~~l~~~l~~~~~ 416 (597)
. +-++..+..++...+.
T Consensus 208 ~C~c~~~~l~~wl~~~~~ 225 (290)
T 1p9a_G 208 LCNCEILYFRRWLQDNAE 225 (290)
T ss_dssp CCSGGGHHHHHHHHHTGG
T ss_pred cCcCccHHHHHHHHhCcc
Confidence 6 3344555566555443
No 93
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.63 E-value=1.3e-17 Score=163.49 Aligned_cols=13 Identities=8% Similarity=0.238 Sum_probs=5.7
Q ss_pred CCccEEEeccCCC
Q 007577 190 QTAEEVSFAANGI 202 (597)
Q Consensus 190 ~~L~~L~L~~~~l 202 (597)
++|+.|++++|.+
T Consensus 41 ~~L~~L~l~~~~i 53 (272)
T 3rfs_A 41 NSIDQIIANNSDI 53 (272)
T ss_dssp TTCCEEECTTSCC
T ss_pred cceeeeeeCCCCc
Confidence 3444444444443
No 94
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.62 E-value=2.5e-17 Score=161.42 Aligned_cols=42 Identities=14% Similarity=0.186 Sum_probs=17.9
Q ss_pred HcCCCCcEEEccCCCCCcHHHHHHHHHHhcCCCccEEEccCCCCCh
Q 007577 384 KNCKSLLWINLYMNDIGDEGAEKIADALKQNRTITTIDLGGNNIHS 429 (597)
Q Consensus 384 ~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~ 429 (597)
..+++|++|++++|.+++. ....+..+++|++|++++|.++.
T Consensus 154 ~~l~~L~~L~l~~n~l~~~----~~~~~~~l~~L~~L~L~~N~l~~ 195 (272)
T 3rfs_A 154 DKLTNLTELDLSYNQLQSL----PEGVFDKLTQLKDLRLYQNQLKS 195 (272)
T ss_dssp TTCTTCCEEECCSSCCCCC----CTTTTTTCTTCCEEECCSSCCSC
T ss_pred ccCccCCEEECCCCCcCcc----CHHHhcCCccCCEEECCCCcCCc
Confidence 3444455555555544432 11112334444555555444443
No 95
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.60 E-value=1.4e-17 Score=163.07 Aligned_cols=112 Identities=18% Similarity=0.165 Sum_probs=48.2
Q ss_pred HcCCCCcEEEccCCCCCcHHHHHHHHHHhcCCCccEEEccCCCCChHHHHHHHHHhhcCCCcCEEECcCCCCCHHHHHHH
Q 007577 384 KNCKSLLWINLYMNDIGDEGAEKIADALKQNRTITTIDLGGNNIHSKGASAIARVLKDNSVITSLDLAYNPIGADGAKAL 463 (597)
Q Consensus 384 ~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l 463 (597)
..+++|++|++++|.++.. ....+..+++|++|+|++|.|+.... ..+..+++|++|++++|.++....
T Consensus 106 ~~l~~L~~L~l~~n~l~~~----~~~~~~~l~~L~~L~Ls~n~l~~~~~----~~~~~l~~L~~L~L~~n~l~~~~~--- 174 (270)
T 2o6q_A 106 DQLVNLAELRLDRNQLKSL----PPRVFDSLTKLTYLSLGYNELQSLPK----GVFDKLTSLKELRLYNNQLKRVPE--- 174 (270)
T ss_dssp TTCSSCCEEECCSSCCCCC----CTTTTTTCTTCCEEECCSSCCCCCCT----TTTTTCTTCCEEECCSSCCSCCCT---
T ss_pred ccccCCCEEECCCCccCee----CHHHhCcCcCCCEEECCCCcCCccCH----hHccCCcccceeEecCCcCcEeCh---
Confidence 3444555555555544432 11123334555555555555443211 112334555555555554443211
Q ss_pred HHHHhhCCCcCEEecCCCCCChhHHHHHHHHHhcCCCccEEEccCCCC
Q 007577 464 SEVLKFHGNINTLKLGWCQIGASGAEFVADMLRYNNTISILDLRANGL 511 (597)
Q Consensus 464 ~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~n~i 511 (597)
..+..+++|++|++++|.++..... .+..+++|+.|++++|.+
T Consensus 175 -~~~~~l~~L~~L~L~~N~l~~~~~~----~~~~l~~L~~L~l~~N~~ 217 (270)
T 2o6q_A 175 -GAFDKLTELKTLKLDNNQLKRVPEG----AFDSLEKLKMLQLQENPW 217 (270)
T ss_dssp -TTTTTCTTCCEEECCSSCCSCCCTT----TTTTCTTCCEEECCSSCB
T ss_pred -hHhccCCCcCEEECCCCcCCcCCHH----HhccccCCCEEEecCCCe
Confidence 1122334555555555554433221 122345555555555543
No 96
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.59 E-value=3.4e-17 Score=160.29 Aligned_cols=134 Identities=20% Similarity=0.212 Sum_probs=57.4
Q ss_pred CCCccEEEcCCCCCChHHHHHHHHHhhcCCCCCEEEccCCCCChHHHHHHHHhhhcCccccceeeccCCCCChhHHHHHH
Q 007577 301 NSTIRSLHLNGNYGGALGANALAKGLEGNKSLRELHLHGNSIGDEGIRALMSGLSSRKGKLAVLDIGNNSISAKGAFHVA 380 (597)
Q Consensus 301 ~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~ 380 (597)
+++|++|++++|.++..+. ..+..+++|++|++++|.++.... .....+++|+.|++++|.++.. ..
T Consensus 84 l~~L~~L~l~~n~l~~~~~----~~~~~l~~L~~L~l~~n~l~~~~~-----~~~~~l~~L~~L~Ls~n~l~~~----~~ 150 (270)
T 2o6q_A 84 LKNLETLWVTDNKLQALPI----GVFDQLVNLAELRLDRNQLKSLPP-----RVFDSLTKLTYLSLGYNELQSL----PK 150 (270)
T ss_dssp CTTCCEEECCSSCCCCCCT----TTTTTCSSCCEEECCSSCCCCCCT-----TTTTTCTTCCEEECCSSCCCCC----CT
T ss_pred CCCCCEEECCCCcCCcCCH----hHcccccCCCEEECCCCccCeeCH-----HHhCcCcCCCEEECCCCcCCcc----CH
Confidence 4444444444444433222 123344555555555554443211 1112333455555555544441 11
Q ss_pred HHHHcCCCCcEEEccCCCCCcHHHHHHHHHHhcCCCccEEEccCCCCChHHHHHHHHHhhcCCCcCEEECcCCCC
Q 007577 381 EYIKNCKSLLWINLYMNDIGDEGAEKIADALKQNRTITTIDLGGNNIHSKGASAIARVLKDNSVITSLDLAYNPI 455 (597)
Q Consensus 381 ~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i 455 (597)
..+..+++|++|+|++|.++.. ....+..+++|++|++++|.|+.... ..+..+++|+.|+|++|++
T Consensus 151 ~~~~~l~~L~~L~L~~n~l~~~----~~~~~~~l~~L~~L~L~~N~l~~~~~----~~~~~l~~L~~L~l~~N~~ 217 (270)
T 2o6q_A 151 GVFDKLTSLKELRLYNNQLKRV----PEGAFDKLTELKTLKLDNNQLKRVPE----GAFDSLEKLKMLQLQENPW 217 (270)
T ss_dssp TTTTTCTTCCEEECCSSCCSCC----CTTTTTTCTTCCEEECCSSCCSCCCT----TTTTTCTTCCEEECCSSCB
T ss_pred hHccCCcccceeEecCCcCcEe----ChhHhccCCCcCEEECCCCcCCcCCH----HHhccccCCCEEEecCCCe
Confidence 2234455555555555555432 11123334555555555555543211 1123345555555555543
No 97
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.56 E-value=2.4e-15 Score=148.58 Aligned_cols=59 Identities=25% Similarity=0.263 Sum_probs=29.1
Q ss_pred CCccEEEeccCCCChhhHHHHHHHHhhCCCccEEEcCCCCCChHHHHHHHHHhhcCCCCCEEEccCCCCCh
Q 007577 274 SILRVLELNNNMIDYSGFTSLAEALLENSTIRSLHLNGNYGGALGANALAKGLEGNKSLRELHLHGNSIGD 344 (597)
Q Consensus 274 ~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~ 344 (597)
++|++|++++|.+++. ..+..+++|++|++++|.++.... +..+++|++|++++|.+++
T Consensus 46 ~~L~~L~l~~~~i~~~------~~~~~l~~L~~L~L~~n~l~~~~~------l~~l~~L~~L~l~~n~l~~ 104 (291)
T 1h6t_A 46 NSIDQIIANNSDIKSV------QGIQYLPNVTKLFLNGNKLTDIKP------LANLKNLGWLFLDENKVKD 104 (291)
T ss_dssp HTCCEEECTTSCCCCC------TTGGGCTTCCEEECCSSCCCCCGG------GTTCTTCCEEECCSSCCCC
T ss_pred CcccEEEccCCCcccC------hhHhcCCCCCEEEccCCccCCCcc------cccCCCCCEEECCCCcCCC
Confidence 4556666666555431 123345555555555555544321 3445555555555555443
No 98
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.55 E-value=2e-15 Score=149.16 Aligned_cols=14 Identities=7% Similarity=0.223 Sum_probs=6.4
Q ss_pred CCccEEEeccCCCC
Q 007577 190 QTAEEVSFAANGIT 203 (597)
Q Consensus 190 ~~L~~L~L~~~~l~ 203 (597)
++|+.|++++|.++
T Consensus 46 ~~L~~L~l~~~~i~ 59 (291)
T 1h6t_A 46 NSIDQIIANNSDIK 59 (291)
T ss_dssp HTCCEEECTTSCCC
T ss_pred CcccEEEccCCCcc
Confidence 34444444444443
No 99
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.53 E-value=5.1e-15 Score=137.34 Aligned_cols=14 Identities=14% Similarity=-0.005 Sum_probs=5.4
Q ss_pred CCCcCEEECcCCCC
Q 007577 442 NSVITSLDLAYNPI 455 (597)
Q Consensus 442 ~~~L~~L~Ls~n~i 455 (597)
+++|++|++++|+|
T Consensus 180 l~~L~~L~l~~N~i 193 (197)
T 4ezg_A 180 FPKLNQLYAFSQTI 193 (197)
T ss_dssp CSSCCEEEECBC--
T ss_pred CCCCCEEEeeCccc
Confidence 34444444444443
No 100
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.52 E-value=3.7e-15 Score=138.28 Aligned_cols=39 Identities=18% Similarity=0.157 Sum_probs=16.4
Q ss_pred hcCCCcCEEECcCCCCCHHHHHHHHHHHhhCCCcCEEecCCCCCC
Q 007577 440 KDNSVITSLDLAYNPIGADGAKALSEVLKFHGNINTLKLGWCQIG 484 (597)
Q Consensus 440 ~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~i~ 484 (597)
..+++|++|++++|.+++.. .+..+++|++|++++|+|+
T Consensus 156 ~~l~~L~~L~l~~n~i~~~~------~l~~l~~L~~L~l~~N~i~ 194 (197)
T 4ezg_A 156 KTLPELKSLNIQFDGVHDYR------GIEDFPKLNQLYAFSQTIG 194 (197)
T ss_dssp GGCSSCCEEECTTBCCCCCT------TGGGCSSCCEEEECBC---
T ss_pred cCCCCCCEEECCCCCCcChH------HhccCCCCCEEEeeCcccC
Confidence 33444555555554444321 2333455555555555543
No 101
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.49 E-value=1.7e-14 Score=156.28 Aligned_cols=170 Identities=25% Similarity=0.196 Sum_probs=122.4
Q ss_pred CCccEEEeccCCCChhhHHHHHHHHhhCCCccEEEcCCCCCChHHHHHHHHHhhcCCCCCEEEccCCCCChHHHHHHHHh
Q 007577 274 SILRVLELNNNMIDYSGFTSLAEALLENSTIRSLHLNGNYGGALGANALAKGLEGNKSLRELHLHGNSIGDEGIRALMSG 353 (597)
Q Consensus 274 ~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~ 353 (597)
++|+.|++++|.+..- ..+..+++|+.|+|++|.+..... +..+++|+.|+|++|.+.+.. .
T Consensus 43 ~~L~~L~l~~n~i~~l------~~l~~l~~L~~L~Ls~N~l~~~~~------l~~l~~L~~L~Ls~N~l~~l~------~ 104 (605)
T 1m9s_A 43 NSIDQIIANNSDIKSV------QGIQYLPNVTKLFLNGNKLTDIKP------LTNLKNLGWLFLDENKIKDLS------S 104 (605)
T ss_dssp TTCCCCBCTTCCCCCC------TTGGGCTTCCEEECTTSCCCCCGG------GGGCTTCCEEECCSSCCCCCT------T
T ss_pred CCCCEEECcCCCCCCC------hHHccCCCCCEEEeeCCCCCCChh------hccCCCCCEEECcCCCCCCCh------h
Confidence 7788888888887642 135678888888888888776543 667888888888888876521 1
Q ss_pred hhcCccccceeeccCCCCChhHHHHHHHHHHcCCCCcEEEccCCCCCcHHHHHHHHHHhcCCCccEEEccCCCCChHHHH
Q 007577 354 LSSRKGKLAVLDIGNNSISAKGAFHVAEYIKNCKSLLWINLYMNDIGDEGAEKIADALKQNRTITTIDLGGNNIHSKGAS 433 (597)
Q Consensus 354 l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~ 433 (597)
+ ..+++|+.|+|++|.++.. ..+..+++|+.|+|++|.+++. ..+..+++|+.|+|++|.|+....
T Consensus 105 l-~~l~~L~~L~Ls~N~l~~l------~~l~~l~~L~~L~Ls~N~l~~l------~~l~~l~~L~~L~Ls~N~l~~~~~- 170 (605)
T 1m9s_A 105 L-KDLKKLKSLSLEHNGISDI------NGLVHLPQLESLYLGNNKITDI------TVLSRLTKLDTLSLEDNQISDIVP- 170 (605)
T ss_dssp S-TTCTTCCEEECTTSCCCCC------GGGGGCTTCSEEECCSSCCCCC------GGGGSCTTCSEEECCSSCCCCCGG-
T ss_pred h-ccCCCCCEEEecCCCCCCC------ccccCCCccCEEECCCCccCCc------hhhcccCCCCEEECcCCcCCCchh-
Confidence 1 3456788888888887762 2366788888888888887763 346667888888888888776422
Q ss_pred HHHHHhhcCCCcCEEECcCCCCCHHHHHHHHHHHhhCCCcCEEecCCCCCChh
Q 007577 434 AIARVLKDNSVITSLDLAYNPIGADGAKALSEVLKFHGNINTLKLGWCQIGAS 486 (597)
Q Consensus 434 ~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~ 486 (597)
+..+++|+.|+|++|.|++. ..+..+++|+.|+|++|.+...
T Consensus 171 -----l~~l~~L~~L~Ls~N~i~~l------~~l~~l~~L~~L~L~~N~l~~~ 212 (605)
T 1m9s_A 171 -----LAGLTKLQNLYLSKNHISDL------RALAGLKNLDVLELFSQECLNK 212 (605)
T ss_dssp -----GTTCTTCCEEECCSSCCCBC------GGGTTCTTCSEEECCSEEEECC
T ss_pred -----hccCCCCCEEECcCCCCCCC------hHHccCCCCCEEEccCCcCcCC
Confidence 56678888888888877653 2355677888888888776543
No 102
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.48 E-value=2.7e-16 Score=152.02 Aligned_cols=158 Identities=18% Similarity=0.211 Sum_probs=69.7
Q ss_pred ccceeeccCCCCChhHHHHHHHHHHcCCCCcEEEccCCCCCcHHHHHHHHHHhcCCCccEEEccCCCCChHHHHHHHHHh
Q 007577 360 KLAVLDIGNNSISAKGAFHVAEYIKNCKSLLWINLYMNDIGDEGAEKIADALKQNRTITTIDLGGNNIHSKGASAIARVL 439 (597)
Q Consensus 360 ~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l 439 (597)
.++.|++++|.++.. .+..+..+++|++|+|++|.+++. ....+..+++|++|+|++|.++.... ..+
T Consensus 36 ~l~~L~L~~n~l~~~----~~~~~~~l~~L~~L~L~~n~l~~~----~~~~~~~l~~L~~L~L~~n~l~~~~~----~~~ 103 (251)
T 3m19_A 36 DTEKLDLQSTGLATL----SDATFRGLTKLTWLNLDYNQLQTL----SAGVFDDLTELGTLGLANNQLASLPL----GVF 103 (251)
T ss_dssp TCCEEECTTSCCCCC----CTTTTTTCTTCCEEECTTSCCCCC----CTTTTTTCTTCCEEECTTSCCCCCCT----TTT
T ss_pred CCCEEEccCCCcCcc----CHhHhcCcccCCEEECCCCcCCcc----CHhHhccCCcCCEEECCCCcccccCh----hHh
Confidence 344444444444431 112234444555555555544432 11223334455555555555443211 122
Q ss_pred hcCCCcCEEECcCCCCCHHHHHHHHHHHhhCCCcCEEecCCCCCChhHHHHHHHHHhcCCCccEEEccCCCCChHHHHHH
Q 007577 440 KDNSVITSLDLAYNPIGADGAKALSEVLKFHGNINTLKLGWCQIGASGAEFVADMLRYNNTISILDLRANGLRDEGAKCL 519 (597)
Q Consensus 440 ~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~n~i~~~~~~~l 519 (597)
..+++|++|+|++|.++.... ..+..+++|++|++++|+++..... .+..+++|++|++++|.++......+
T Consensus 104 ~~l~~L~~L~L~~N~l~~~~~----~~~~~l~~L~~L~Ls~N~l~~~~~~----~~~~l~~L~~L~L~~N~l~~~~~~~~ 175 (251)
T 3m19_A 104 DHLTQLDKLYLGGNQLKSLPS----GVFDRLTKLKELRLNTNQLQSIPAG----AFDKLTNLQTLSLSTNQLQSVPHGAF 175 (251)
T ss_dssp TTCTTCCEEECCSSCCCCCCT----TTTTTCTTCCEEECCSSCCCCCCTT----TTTTCTTCCEEECCSSCCSCCCTTTT
T ss_pred cccCCCCEEEcCCCcCCCcCh----hHhccCCcccEEECcCCcCCccCHH----HcCcCcCCCEEECCCCcCCccCHHHH
Confidence 334555555555555442211 1123345555555555555443221 12334556666666665554332222
Q ss_pred HHHHhhcCccccEEEccCCCCCh
Q 007577 520 AQSFKVVNEALTSIDLAFNEIRD 542 (597)
Q Consensus 520 ~~~l~~~n~~L~~L~Ls~n~i~~ 542 (597)
... ++|+.|++++|.+..
T Consensus 176 ~~l-----~~L~~L~l~~N~~~c 193 (251)
T 3m19_A 176 DRL-----GKLQTITLFGNQFDC 193 (251)
T ss_dssp TTC-----TTCCEEECCSCCBCT
T ss_pred hCC-----CCCCEEEeeCCceeC
Confidence 221 456666666665543
No 103
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.48 E-value=2.1e-15 Score=145.76 Aligned_cols=16 Identities=31% Similarity=0.366 Sum_probs=7.3
Q ss_pred cCCCCCEEEccCCCCC
Q 007577 328 GNKSLRELHLHGNSIG 343 (597)
Q Consensus 328 ~~~~L~~L~Ls~n~i~ 343 (597)
.+++|++|++++|.++
T Consensus 105 ~l~~L~~L~L~~N~l~ 120 (251)
T 3m19_A 105 HLTQLDKLYLGGNQLK 120 (251)
T ss_dssp TCTTCCEEECCSSCCC
T ss_pred ccCCCCEEEcCCCcCC
Confidence 3444444444444443
No 104
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.48 E-value=1.3e-14 Score=157.25 Aligned_cols=169 Identities=23% Similarity=0.215 Sum_probs=96.0
Q ss_pred CCCccEEEeccCCCCHHHHHHHHHHhhhCCCccEEEccCCCCChhHHHHHHHHHhcCCCcCEEEecCCCCChHHHHHHHH
Q 007577 189 NQTAEEVSFAANGITAAGIKAFDGVLQSNIALKTLNLSGNPIGDEGVKCLCDILVDNAGVERLQLSSVDLRDEGAKAIAE 268 (597)
Q Consensus 189 ~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~~~l~~~~~~~l~~ 268 (597)
+++|+.|++++|.+.... .+..+++|+.|+|++|.+.+... +..+++|+.|+|++|.+++. .
T Consensus 42 L~~L~~L~l~~n~i~~l~------~l~~l~~L~~L~Ls~N~l~~~~~------l~~l~~L~~L~Ls~N~l~~l------~ 103 (605)
T 1m9s_A 42 LNSIDQIIANNSDIKSVQ------GIQYLPNVTKLFLNGNKLTDIKP------LTNLKNLGWLFLDENKIKDL------S 103 (605)
T ss_dssp HTTCCCCBCTTCCCCCCT------TGGGCTTCCEEECTTSCCCCCGG------GGGCTTCCEEECCSSCCCCC------T
T ss_pred CCCCCEEECcCCCCCCCh------HHccCCCCCEEEeeCCCCCCChh------hccCCCCCEEECcCCCCCCC------h
Confidence 467777777777765421 24566777777777777665421 44567777777777766652 1
Q ss_pred HHHcCCCccEEEeccCCCChhhHHHHHHHHhhCCCccEEEcCCCCCChHHHHHHHHHhhcCCCCCEEEccCCCCChHHHH
Q 007577 269 LLKNNSILRVLELNNNMIDYSGFTSLAEALLENSTIRSLHLNGNYGGALGANALAKGLEGNKSLRELHLHGNSIGDEGIR 348 (597)
Q Consensus 269 ~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~ 348 (597)
.+..+++|++|+|++|.+++. ..+..+++|+.|+|++|.++.. ..+..+++|+.|+|++|.+.+...
T Consensus 104 ~l~~l~~L~~L~Ls~N~l~~l------~~l~~l~~L~~L~Ls~N~l~~l------~~l~~l~~L~~L~Ls~N~l~~~~~- 170 (605)
T 1m9s_A 104 SLKDLKKLKSLSLEHNGISDI------NGLVHLPQLESLYLGNNKITDI------TVLSRLTKLDTLSLEDNQISDIVP- 170 (605)
T ss_dssp TSTTCTTCCEEECTTSCCCCC------GGGGGCTTCSEEECCSSCCCCC------GGGGSCTTCSEEECCSSCCCCCGG-
T ss_pred hhccCCCCCEEEecCCCCCCC------ccccCCCccCEEECCCCccCCc------hhhcccCCCCEEECcCCcCCCchh-
Confidence 244556666666666666541 2344566666666666665543 224555666666666665554211
Q ss_pred HHHHhhhcCccccceeeccCCCCChhHHHHHHHHHHcCCCCcEEEccCCCCC
Q 007577 349 ALMSGLSSRKGKLAVLDIGNNSISAKGAFHVAEYIKNCKSLLWINLYMNDIG 400 (597)
Q Consensus 349 ~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~ 400 (597)
...+++|+.|+|++|.+++ + ..+..+++|+.|+|++|.+.
T Consensus 171 ------l~~l~~L~~L~Ls~N~i~~-----l-~~l~~l~~L~~L~L~~N~l~ 210 (605)
T 1m9s_A 171 ------LAGLTKLQNLYLSKNHISD-----L-RALAGLKNLDVLELFSQECL 210 (605)
T ss_dssp ------GTTCTTCCEEECCSSCCCB-----C-GGGTTCTTCSEEECCSEEEE
T ss_pred ------hccCCCCCEEECcCCCCCC-----C-hHHccCCCCCEEEccCCcCc
Confidence 1234455666666655554 1 22445555555555555443
No 105
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.48 E-value=5.7e-16 Score=148.60 Aligned_cols=179 Identities=11% Similarity=0.143 Sum_probs=81.7
Q ss_pred CccEEEeccCCCCHHHHHHHHHHhhhCCCccEEEccCCC-CChhHHHHHHHHHhcCCCcCEEEecC-CCCChHHHHHHHH
Q 007577 191 TAEEVSFAANGITAAGIKAFDGVLQSNIALKTLNLSGNP-IGDEGVKCLCDILVDNAGVERLQLSS-VDLRDEGAKAIAE 268 (597)
Q Consensus 191 ~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~-l~~~~~~~l~~~l~~~~~L~~L~Ls~-~~l~~~~~~~l~~ 268 (597)
+|+.|++++|+++.... ..+..+++|++|++++|. ++.... ..+..+++|++|++++ |.++... ..
T Consensus 32 ~l~~L~l~~n~l~~i~~----~~~~~l~~L~~L~l~~n~~l~~i~~----~~f~~l~~L~~L~l~~~n~l~~i~----~~ 99 (239)
T 2xwt_C 32 STQTLKLIETHLRTIPS----HAFSNLPNISRIYVSIDVTLQQLES----HSFYNLSKVTHIEIRNTRNLTYID----PD 99 (239)
T ss_dssp TCCEEEEESCCCSEECT----TTTTTCTTCCEEEEECCSSCCEECT----TTEESCTTCCEEEEEEETTCCEEC----TT
T ss_pred cccEEEEeCCcceEECH----HHccCCCCCcEEeCCCCCCcceeCH----hHcCCCcCCcEEECCCCCCeeEcC----HH
Confidence 45555555555443211 122344555555555554 443211 1223345555555555 5554421 11
Q ss_pred HHHcCCCccEEEeccCCCChhhHHHHHHHHhhCCCcc---EEEcCCC-CCChHHHHHHHHHhhcCCCCC-EEEccCCCCC
Q 007577 269 LLKNNSILRVLELNNNMIDYSGFTSLAEALLENSTIR---SLHLNGN-YGGALGANALAKGLEGNKSLR-ELHLHGNSIG 343 (597)
Q Consensus 269 ~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~---~L~L~~n-~i~~~~~~~l~~~l~~~~~L~-~L~Ls~n~i~ 343 (597)
.+..+++|++|++++|.++. ++. +..+++|+ +|++++| .++.... ..+.++++|+ +|++++|.++
T Consensus 100 ~f~~l~~L~~L~l~~n~l~~-----lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~----~~~~~l~~L~~~L~l~~n~l~ 169 (239)
T 2xwt_C 100 ALKELPLLKFLGIFNTGLKM-----FPD-LTKVYSTDIFFILEITDNPYMTSIPV----NAFQGLCNETLTLKLYNNGFT 169 (239)
T ss_dssp SEECCTTCCEEEEEEECCCS-----CCC-CTTCCBCCSEEEEEEESCTTCCEECT----TTTTTTBSSEEEEECCSCCCC
T ss_pred HhCCCCCCCEEeCCCCCCcc-----ccc-cccccccccccEEECCCCcchhhcCc----ccccchhcceeEEEcCCCCCc
Confidence 23334556666666655542 111 33344444 5555555 5544332 2244555666 6666666554
Q ss_pred hHHHHHHHHhhhcCccccceeeccCCC-CChhHHHHHHHHHHcC-CCCcEEEccCCCCCc
Q 007577 344 DEGIRALMSGLSSRKGKLAVLDIGNNS-ISAKGAFHVAEYIKNC-KSLLWINLYMNDIGD 401 (597)
Q Consensus 344 ~~~~~~l~~~l~~~~~~L~~L~Ls~n~-l~~~~~~~l~~~l~~~-~~L~~L~Ls~n~l~~ 401 (597)
... ...... ++|+.|++++|. ++.. .+..+..+ ++|++|++++|.++.
T Consensus 170 ~i~-----~~~~~~-~~L~~L~L~~n~~l~~i----~~~~~~~l~~~L~~L~l~~N~l~~ 219 (239)
T 2xwt_C 170 SVQ-----GYAFNG-TKLDAVYLNKNKYLTVI----DKDAFGGVYSGPSLLDVSQTSVTA 219 (239)
T ss_dssp EEC-----TTTTTT-CEEEEEECTTCTTCCEE----CTTTTTTCSBCCSEEECTTCCCCC
T ss_pred ccC-----HhhcCC-CCCCEEEcCCCCCcccC----CHHHhhccccCCcEEECCCCcccc
Confidence 321 111112 356666666663 5541 12234445 556666666655543
No 106
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.47 E-value=6.3e-16 Score=148.29 Aligned_cols=35 Identities=14% Similarity=0.190 Sum_probs=16.0
Q ss_pred CcCEEEecCCCCChHHHHHHHHHHHcCCCccEEEeccCC
Q 007577 247 GVERLQLSSVDLRDEGAKAIAELLKNNSILRVLELNNNM 285 (597)
Q Consensus 247 ~L~~L~Ls~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~ 285 (597)
+|++|++++|+++.... ..+..+++|++|++++|+
T Consensus 32 ~l~~L~l~~n~l~~i~~----~~~~~l~~L~~L~l~~n~ 66 (239)
T 2xwt_C 32 STQTLKLIETHLRTIPS----HAFSNLPNISRIYVSIDV 66 (239)
T ss_dssp TCCEEEEESCCCSEECT----TTTTTCTTCCEEEEECCS
T ss_pred cccEEEEeCCcceEECH----HHccCCCCCcEEeCCCCC
Confidence 45555555555544211 122333455555555553
No 107
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.45 E-value=7.2e-15 Score=157.57 Aligned_cols=188 Identities=19% Similarity=0.206 Sum_probs=116.2
Q ss_pred CCccEEEeccCCCCHHHHHHHHHHhhhCCCccEEEccCCCCChhHHHHHHHHHhcCCCcCEEEecCCCCChHHHHHHHHH
Q 007577 190 QTAEEVSFAANGITAAGIKAFDGVLQSNIALKTLNLSGNPIGDEGVKCLCDILVDNAGVERLQLSSVDLRDEGAKAIAEL 269 (597)
Q Consensus 190 ~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~~~l~~~~~~~l~~~ 269 (597)
.+|+.|++++|.++. ++..+ .++|++|+|++|.++.. + ..+++|++|++++|.++.. +.
T Consensus 59 ~~L~~L~Ls~n~L~~-----lp~~l--~~~L~~L~Ls~N~l~~i-----p---~~l~~L~~L~Ls~N~l~~i-----p~- 117 (571)
T 3cvr_A 59 NQFSELQLNRLNLSS-----LPDNL--PPQITVLEITQNALISL-----P---ELPASLEYLDACDNRLSTL-----PE- 117 (571)
T ss_dssp TTCSEEECCSSCCSC-----CCSCC--CTTCSEEECCSSCCSCC-----C---CCCTTCCEEECCSSCCSCC-----CC-
T ss_pred CCccEEEeCCCCCCc-----cCHhH--cCCCCEEECcCCCCccc-----c---cccCCCCEEEccCCCCCCc-----ch-
Confidence 478888888887763 22211 25688888888887743 2 2357788888888877762 22
Q ss_pred HHcCCCccEEEeccCCCChhhHHHHHHHHhhCCCccEEEcCCCCCChHHHHHHHHHhhcCCCCCEEEccCCCCChHHHHH
Q 007577 270 LKNNSILRVLELNNNMIDYSGFTSLAEALLENSTIRSLHLNGNYGGALGANALAKGLEGNKSLRELHLHGNSIGDEGIRA 349 (597)
Q Consensus 270 l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~ 349 (597)
+. .+|++|++++|.|+. ++. .+++|+.|++++|.++..+. .+++|++|++++|.++..
T Consensus 118 l~--~~L~~L~Ls~N~l~~-----lp~---~l~~L~~L~Ls~N~l~~lp~--------~l~~L~~L~Ls~N~L~~l---- 175 (571)
T 3cvr_A 118 LP--ASLKHLDVDNNQLTM-----LPE---LPALLEYINADNNQLTMLPE--------LPTSLEVLSVRNNQLTFL---- 175 (571)
T ss_dssp CC--TTCCEEECCSSCCSC-----CCC---CCTTCCEEECCSSCCSCCCC--------CCTTCCEEECCSSCCSCC----
T ss_pred hh--cCCCEEECCCCcCCC-----CCC---cCccccEEeCCCCccCcCCC--------cCCCcCEEECCCCCCCCc----
Confidence 22 268888888887754 222 45777888888777765332 356777777777776652
Q ss_pred HHHhhhcCccccceeeccCCCCChhHHHHHHHHHHcCCCC-------cEEEccCCCCCcHHHHHHHHHHhcCCCccEEEc
Q 007577 350 LMSGLSSRKGKLAVLDIGNNSISAKGAFHVAEYIKNCKSL-------LWINLYMNDIGDEGAEKIADALKQNRTITTIDL 422 (597)
Q Consensus 350 l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L-------~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L 422 (597)
.. +. ++|+.|+|++|.|+. ++. +.. +| +.|+|++|.|+. ++..+..+++|++|+|
T Consensus 176 -p~-l~---~~L~~L~Ls~N~L~~-----lp~-~~~--~L~~~~~~L~~L~Ls~N~l~~-----lp~~l~~l~~L~~L~L 237 (571)
T 3cvr_A 176 -PE-LP---ESLEALDVSTNLLES-----LPA-VPV--RNHHSEETEIFFRCRENRITH-----IPENILSLDPTCTIIL 237 (571)
T ss_dssp -CC-CC---TTCCEEECCSSCCSS-----CCC-CC----------CCEEEECCSSCCCC-----CCGGGGGSCTTEEEEC
T ss_pred -ch-hh---CCCCEEECcCCCCCc-----hhh-HHH--hhhcccccceEEecCCCccee-----cCHHHhcCCCCCEEEe
Confidence 11 11 467777777777765 222 211 34 777777776664 4444555666777777
Q ss_pred cCCCCChHHHHHHHHH
Q 007577 423 GGNNIHSKGASAIARV 438 (597)
Q Consensus 423 ~~n~l~~~~~~~l~~~ 438 (597)
++|.++......+...
T Consensus 238 ~~N~l~~~~p~~l~~l 253 (571)
T 3cvr_A 238 EDNPLSSRIRESLSQQ 253 (571)
T ss_dssp CSSSCCHHHHHHHHHH
T ss_pred eCCcCCCcCHHHHHHh
Confidence 7777766655555443
No 108
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.44 E-value=1.5e-14 Score=155.09 Aligned_cols=195 Identities=18% Similarity=0.211 Sum_probs=141.6
Q ss_pred cCCCcEEEcCCCCCCHHHHHHHHHHhccCCCccEEEeccCCCCHHHHHHHHHHhhhCCCccEEEccCCCCChhHHHHHHH
Q 007577 161 LRAFSSVDMSGRNFGDEGLFFLAESLGYNQTAEEVSFAANGITAAGIKAFDGVLQSNIALKTLNLSGNPIGDEGVKCLCD 240 (597)
Q Consensus 161 ~~~L~~L~Ls~~~l~~~~~~~l~~~l~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~ 240 (597)
..+++.|+|++|.++. ++..+ .++|+.|++++|.|+... ..+++|++|++++|.++.. +.
T Consensus 58 ~~~L~~L~Ls~n~L~~-----lp~~l--~~~L~~L~Ls~N~l~~ip--------~~l~~L~~L~Ls~N~l~~i-----p~ 117 (571)
T 3cvr_A 58 INQFSELQLNRLNLSS-----LPDNL--PPQITVLEITQNALISLP--------ELPASLEYLDACDNRLSTL-----PE 117 (571)
T ss_dssp HTTCSEEECCSSCCSC-----CCSCC--CTTCSEEECCSSCCSCCC--------CCCTTCCEEECCSSCCSCC-----CC
T ss_pred cCCccEEEeCCCCCCc-----cCHhH--cCCCCEEECcCCCCcccc--------cccCCCCEEEccCCCCCCc-----ch
Confidence 3589999999998875 23322 378999999999987432 2457899999999998763 22
Q ss_pred HHhcCCCcCEEEecCCCCChHHHHHHHHHHHcCCCccEEEeccCCCChhhHHHHHHHHhhCCCccEEEcCCCCCChHHHH
Q 007577 241 ILVDNAGVERLQLSSVDLRDEGAKAIAELLKNNSILRVLELNNNMIDYSGFTSLAEALLENSTIRSLHLNGNYGGALGAN 320 (597)
Q Consensus 241 ~l~~~~~L~~L~Ls~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~ 320 (597)
+. .+|++|++++|.++.. +. .+++|++|++++|.|+. ++. .+++|++|++++|.++..+.
T Consensus 118 -l~--~~L~~L~Ls~N~l~~l-----p~---~l~~L~~L~Ls~N~l~~-----lp~---~l~~L~~L~Ls~N~L~~lp~- 177 (571)
T 3cvr_A 118 -LP--ASLKHLDVDNNQLTML-----PE---LPALLEYINADNNQLTM-----LPE---LPTSLEVLSVRNNQLTFLPE- 177 (571)
T ss_dssp -CC--TTCCEEECCSSCCSCC-----CC---CCTTCCEEECCSSCCSC-----CCC---CCTTCCEEECCSSCCSCCCC-
T ss_pred -hh--cCCCEEECCCCcCCCC-----CC---cCccccEEeCCCCccCc-----CCC---cCCCcCEEECCCCCCCCcch-
Confidence 22 3899999999998873 22 46889999999999864 222 46799999999999876443
Q ss_pred HHHHHhhcCCCCCEEEccCCCCChHHHHHHHHhhhcCccccceeeccCCCCChhHHHHHHHHHHcCCCCcEEEccCCCCC
Q 007577 321 ALAKGLEGNKSLRELHLHGNSIGDEGIRALMSGLSSRKGKLAVLDIGNNSISAKGAFHVAEYIKNCKSLLWINLYMNDIG 400 (597)
Q Consensus 321 ~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~ 400 (597)
+. ++|+.|++++|.++.... +...+....+.|+.|+|++|.|+. ++..+..+++|+.|+|++|.++
T Consensus 178 -----l~--~~L~~L~Ls~N~L~~lp~--~~~~L~~~~~~L~~L~Ls~N~l~~-----lp~~l~~l~~L~~L~L~~N~l~ 243 (571)
T 3cvr_A 178 -----LP--ESLEALDVSTNLLESLPA--VPVRNHHSEETEIFFRCRENRITH-----IPENILSLDPTCTIILEDNPLS 243 (571)
T ss_dssp -----CC--TTCCEEECCSSCCSSCCC--CC--------CCEEEECCSSCCCC-----CCGGGGGSCTTEEEECCSSSCC
T ss_pred -----hh--CCCCEEECcCCCCCchhh--HHHhhhcccccceEEecCCCccee-----cCHHHhcCCCCCEEEeeCCcCC
Confidence 22 789999999999874211 211111122234999999999986 6777778999999999999999
Q ss_pred cHHHHHHHH
Q 007577 401 DEGAEKIAD 409 (597)
Q Consensus 401 ~~~~~~l~~ 409 (597)
......+..
T Consensus 244 ~~~p~~l~~ 252 (571)
T 3cvr_A 244 SRIRESLSQ 252 (571)
T ss_dssp HHHHHHHHH
T ss_pred CcCHHHHHH
Confidence 875555544
No 109
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.43 E-value=9.1e-15 Score=142.13 Aligned_cols=124 Identities=19% Similarity=0.274 Sum_probs=60.7
Q ss_pred ccceeeccCCCCChhHHHHHHHHHHcCCCCcEEEccCCCCCcHHHHHHHHHHhcCCCccEEEccCCCCChHHHHHHHHHh
Q 007577 360 KLAVLDIGNNSISAKGAFHVAEYIKNCKSLLWINLYMNDIGDEGAEKIADALKQNRTITTIDLGGNNIHSKGASAIARVL 439 (597)
Q Consensus 360 ~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l 439 (597)
+|+.|++++|.++. ++ .+..+++|++|++++|.+++. .. +..+++|++|++++|+++... . +
T Consensus 42 ~L~~L~l~~n~i~~-----l~-~l~~l~~L~~L~L~~N~i~~~-----~~-l~~l~~L~~L~L~~N~l~~l~-----~-~ 103 (263)
T 1xeu_A 42 GVQNFNGDNSNIQS-----LA-GMQFFTNLKELHLSHNQISDL-----SP-LKDLTKLEELSVNRNRLKNLN-----G-I 103 (263)
T ss_dssp TCSEEECTTSCCCC-----CT-TGGGCTTCCEEECCSSCCCCC-----GG-GTTCSSCCEEECCSSCCSCCT-----T-C
T ss_pred cCcEEECcCCCccc-----ch-HHhhCCCCCEEECCCCccCCC-----hh-hccCCCCCEEECCCCccCCcC-----c-c
Confidence 55555555555554 22 344555555555555555542 11 444555555555555554421 1 1
Q ss_pred hcCCCcCEEECcCCCCCHHHHHHHHHHHhhCCCcCEEecCCCCCChhHHHHHHHHHhcCCCccEEEccCCCCChH
Q 007577 440 KDNSVITSLDLAYNPIGADGAKALSEVLKFHGNINTLKLGWCQIGASGAEFVADMLRYNNTISILDLRANGLRDE 514 (597)
Q Consensus 440 ~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~n~i~~~ 514 (597)
.. ++|++|++++|.+++. ..+..+++|++|++++|++++.. .+..+++|+.|++++|.+++.
T Consensus 104 ~~-~~L~~L~L~~N~l~~~------~~l~~l~~L~~L~Ls~N~i~~~~------~l~~l~~L~~L~L~~N~i~~~ 165 (263)
T 1xeu_A 104 PS-ACLSRLFLDNNELRDT------DSLIHLKNLEILSIRNNKLKSIV------MLGFLSKLEVLDLHGNEITNT 165 (263)
T ss_dssp CC-SSCCEEECCSSCCSBS------GGGTTCTTCCEEECTTSCCCBCG------GGGGCTTCCEEECTTSCCCBC
T ss_pred cc-CcccEEEccCCccCCC------hhhcCcccccEEECCCCcCCCCh------HHccCCCCCEEECCCCcCcch
Confidence 11 4555555555555442 12344455555555555554431 233445555555555555543
No 110
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=99.42 E-value=1.9e-13 Score=138.23 Aligned_cols=157 Identities=10% Similarity=0.104 Sum_probs=74.9
Q ss_pred HhhcCCCCCEEEccCCC-CChHHHHHHHHhhhcCccccceeeccCCCCChhHHHHHHHHHHcCCCCcEEEccCC---CCC
Q 007577 325 GLEGNKSLRELHLHGNS-IGDEGIRALMSGLSSRKGKLAVLDIGNNSISAKGAFHVAEYIKNCKSLLWINLYMN---DIG 400 (597)
Q Consensus 325 ~l~~~~~L~~L~Ls~n~-i~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n---~l~ 400 (597)
.+..+|+|++|++++|. +. +.. + ..++|+.|++..|.++..++..+. ...+|+|++|+|+.+ ...
T Consensus 167 ll~~~P~L~~L~L~g~~~l~------l~~-~--~~~~L~~L~L~~~~l~~~~l~~l~--~~~lp~L~~L~L~~~~~~~~~ 235 (362)
T 2ra8_A 167 VLDAMPLLNNLKIKGTNNLS------IGK-K--PRPNLKSLEIISGGLPDSVVEDIL--GSDLPNLEKLVLYVGVEDYGF 235 (362)
T ss_dssp HHHTCTTCCEEEEECCBTCB------CCS-C--BCTTCSEEEEECSBCCHHHHHHHH--HSBCTTCCEEEEECBCGGGTC
T ss_pred HHhcCCCCcEEEEeCCCCce------ecc-c--cCCCCcEEEEecCCCChHHHHHHH--HccCCCCcEEEEecccccccc
Confidence 34556667777776652 11 000 0 134677777777776665443322 125677777776421 111
Q ss_pred cHHHHHHHHHHh--cCCCccEEEccCCCCChHHHHHHHHHhhcCCCcCEEECcCCCCCHHHHHHHHHHHhhCCCcCEEec
Q 007577 401 DEGAEKIADALK--QNRTITTIDLGGNNIHSKGASAIARVLKDNSVITSLDLAYNPIGADGAKALSEVLKFHGNINTLKL 478 (597)
Q Consensus 401 ~~~~~~l~~~l~--~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~L 478 (597)
+.++..+...+. .+++|++|+|.+|.+++.+...++.. ..+++|++|+|++|.+++.++..+...+..+++|+.|++
T Consensus 236 ~~~~~~l~~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a-~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L 314 (362)
T 2ra8_A 236 DGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLES-DILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINM 314 (362)
T ss_dssp CSCGGGTGGGSCTTTCTTCCEEEEESCTTHHHHHHHHHHC-SSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEEC
T ss_pred chhHHHHHHHHhcCCCCCcCEEeCCCCCCchHHHHHHHhC-ccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEEC
Confidence 211111222121 24556666666555555444444332 223555555555555555555555444444445555555
Q ss_pred CCCCCChhHHHHHHH
Q 007577 479 GWCQIGASGAEFVAD 493 (597)
Q Consensus 479 ~~n~i~~~~~~~l~~ 493 (597)
++|.|++.+...+..
T Consensus 315 ~~n~i~d~~~~~l~~ 329 (362)
T 2ra8_A 315 KYNYLSDEMKKELQK 329 (362)
T ss_dssp CSBBCCHHHHHHHHH
T ss_pred CCCcCCHHHHHHHHH
Confidence 555554444444443
No 111
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.41 E-value=2.2e-14 Score=139.47 Aligned_cols=125 Identities=21% Similarity=0.235 Sum_probs=62.0
Q ss_pred hCCCccEEEcCCCCCChHHHHHHHHHhhcCCCCCEEEccCCCCChHHHHHHHHhhhcCccccceeeccCCCCChhHHHHH
Q 007577 300 ENSTIRSLHLNGNYGGALGANALAKGLEGNKSLRELHLHGNSIGDEGIRALMSGLSSRKGKLAVLDIGNNSISAKGAFHV 379 (597)
Q Consensus 300 ~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l 379 (597)
.+++|++|++++|.++.... +..+++|++|++++|.+++.. . +. . ++|+.|++++|.++..
T Consensus 61 ~l~~L~~L~L~~N~i~~~~~------l~~l~~L~~L~L~~N~l~~l~--~----~~-~-~~L~~L~L~~N~l~~~----- 121 (263)
T 1xeu_A 61 FFTNLKELHLSHNQISDLSP------LKDLTKLEELSVNRNRLKNLN--G----IP-S-ACLSRLFLDNNELRDT----- 121 (263)
T ss_dssp GCTTCCEEECCSSCCCCCGG------GTTCSSCCEEECCSSCCSCCT--T----CC-C-SSCCEEECCSSCCSBS-----
T ss_pred hCCCCCEEECCCCccCCChh------hccCCCCCEEECCCCccCCcC--c----cc-c-CcccEEEccCCccCCC-----
Confidence 34444444444444443321 344555555555555554310 0 10 1 3566666666655551
Q ss_pred HHHHHcCCCCcEEEccCCCCCcHHHHHHHHHHhcCCCccEEEccCCCCChHHHHHHHHHhhcCCCcCEEECcCCCCC
Q 007577 380 AEYIKNCKSLLWINLYMNDIGDEGAEKIADALKQNRTITTIDLGGNNIHSKGASAIARVLKDNSVITSLDLAYNPIG 456 (597)
Q Consensus 380 ~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~ 456 (597)
..+..+++|++|++++|.+++. ..+..+++|++|++++|.|++. ..+..+++|+.|++++|+++
T Consensus 122 -~~l~~l~~L~~L~Ls~N~i~~~------~~l~~l~~L~~L~L~~N~i~~~------~~l~~l~~L~~L~l~~N~~~ 185 (263)
T 1xeu_A 122 -DSLIHLKNLEILSIRNNKLKSI------VMLGFLSKLEVLDLHGNEITNT------GGLTRLKKVNWIDLTGQKCV 185 (263)
T ss_dssp -GGGTTCTTCCEEECTTSCCCBC------GGGGGCTTCCEEECTTSCCCBC------TTSTTCCCCCEEEEEEEEEE
T ss_pred -hhhcCcccccEEECCCCcCCCC------hHHccCCCCCEEECCCCcCcch------HHhccCCCCCEEeCCCCccc
Confidence 1245556666666666665552 1344455666666666655553 22444455666666555443
No 112
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=99.41 E-value=5.5e-13 Score=134.86 Aligned_cols=221 Identities=13% Similarity=0.162 Sum_probs=104.1
Q ss_pred CccEEEccCCCCC-h---hHHHHHHHHHhcCCCcCEEEecCCCCChH-----HHHHHHHHHHcCCCccEEEeccCC-CCh
Q 007577 219 ALKTLNLSGNPIG-D---EGVKCLCDILVDNAGVERLQLSSVDLRDE-----GAKAIAELLKNNSILRVLELNNNM-IDY 288 (597)
Q Consensus 219 ~L~~L~Ls~n~l~-~---~~~~~l~~~l~~~~~L~~L~Ls~~~l~~~-----~~~~l~~~l~~~~~L~~L~Ls~n~-i~~ 288 (597)
.++.|.+....+. + ..+..+...+..+++|+.|.+.+....+. ....+...+..+|+|+.|+|++|. +.-
T Consensus 108 ~v~~L~lg~~~~~~~~~~~~~~~L~~s~~~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~l~l 187 (362)
T 2ra8_A 108 SLKQITIGXWGYEGEDCSDIADGIVENKEKFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNLSI 187 (362)
T ss_dssp GCSEEEECCCCSSSCCSHHHHHHHHTTHHHHTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBTCBC
T ss_pred hcceEEEcccccCCCcHHHHHHHHHHhhhhcchhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCCcee
Confidence 5778888755443 1 12333443344567888888765432110 001133445555666666666551 110
Q ss_pred hhHHHHHHHHhhCCCccEEEcCCCCCChHHHHHHHHHhhcCCCCCEEEccCC--C-CChHHHHHHHHhhhcCccccceee
Q 007577 289 SGFTSLAEALLENSTIRSLHLNGNYGGALGANALAKGLEGNKSLRELHLHGN--S-IGDEGIRALMSGLSSRKGKLAVLD 365 (597)
Q Consensus 289 ~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n--~-i~~~~~~~l~~~l~~~~~~L~~L~ 365 (597)
.. + ..++|++|++..|.++......+. ...+|+|++|+|+.+ . ..+.++..+...+..
T Consensus 188 ------~~-~-~~~~L~~L~L~~~~l~~~~l~~l~--~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~--------- 248 (362)
T 2ra8_A 188 ------GK-K-PRPNLKSLEIISGGLPDSVVEDIL--GSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSK--------- 248 (362)
T ss_dssp ------CS-C-BCTTCSEEEEECSBCCHHHHHHHH--HSBCTTCCEEEEECBCGGGTCCSCGGGTGGGSCT---------
T ss_pred ------cc-c-cCCCCcEEEEecCCCChHHHHHHH--HccCCCCcEEEEeccccccccchhHHHHHHHHhc---------
Confidence 10 1 245556666555555544443322 124555555555321 1 111111111111110
Q ss_pred ccCCCCChhHHHHHHHHHHcCCCCcEEEccCCCCCcHHHHHHHHHHhcCCCccEEEccCCCCChHHHHHHHHHhhcCCCc
Q 007577 366 IGNNSISAKGAFHVAEYIKNCKSLLWINLYMNDIGDEGAEKIADALKQNRTITTIDLGGNNIHSKGASAIARVLKDNSVI 445 (597)
Q Consensus 366 Ls~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L 445 (597)
..+++|++|+|.+|.+++.+...+..+ ..+++|++|+|+.|.|++.+...+...+..+++|
T Consensus 249 ------------------~~~p~Lr~L~L~~~~i~~~~~~~la~a-~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L 309 (362)
T 2ra8_A 249 ------------------DRFPNLKWLGIVDAEEQNVVVEMFLES-DILPQLETMDISAGVLTDEGARLLLDHVDKIKHL 309 (362)
T ss_dssp ------------------TTCTTCCEEEEESCTTHHHHHHHHHHC-SSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTC
T ss_pred ------------------CCCCCcCEEeCCCCCCchHHHHHHHhC-ccCCCCCEEECCCCCCChHHHHHHHhhcccCCcc
Confidence 124555555555555555443333321 1245566666666666665555555444455566
Q ss_pred CEEECcCCCCCHHHHHHHHHHHhhCCCcCEEecCCCC
Q 007577 446 TSLDLAYNPIGADGAKALSEVLKFHGNINTLKLGWCQ 482 (597)
Q Consensus 446 ~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~ 482 (597)
+.|+|++|.|++.++..+.+.+ ...+++++++
T Consensus 310 ~~L~L~~n~i~d~~~~~l~~al-----g~~~~~~~~~ 341 (362)
T 2ra8_A 310 KFINMKYNYLSDEMKKELQKSL-----PMKIDVSDSQ 341 (362)
T ss_dssp SEEECCSBBCCHHHHHHHHHHC-----CSEEECCSBC
T ss_pred eEEECCCCcCCHHHHHHHHHHc-----CCEEEecCCc
Confidence 6666666666666555555442 2345555554
No 113
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.40 E-value=2.1e-15 Score=162.51 Aligned_cols=106 Identities=19% Similarity=0.215 Sum_probs=63.5
Q ss_pred CCcEEEccCCCCCcHHHHHHHHHHhcCCCccEEEccCCCCChHHHHHHHHHhhcCCCcCEEECcCCCCCHHHHHHHHHHH
Q 007577 388 SLLWINLYMNDIGDEGAEKIADALKQNRTITTIDLGGNNIHSKGASAIARVLKDNSVITSLDLAYNPIGADGAKALSEVL 467 (597)
Q Consensus 388 ~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l 467 (597)
.|+.|+|++|.++. ++. +..+++|++|+|++|.|+. ++..+..+++|+.|+|++|.|+.. + .+
T Consensus 442 ~L~~L~Ls~n~l~~-----lp~-~~~l~~L~~L~Ls~N~l~~-----lp~~~~~l~~L~~L~Ls~N~l~~l-----p-~l 504 (567)
T 1dce_A 442 DVRVLHLAHKDLTV-----LCH-LEQLLLVTHLDLSHNRLRA-----LPPALAALRCLEVLQASDNALENV-----D-GV 504 (567)
T ss_dssp TCSEEECTTSCCSS-----CCC-GGGGTTCCEEECCSSCCCC-----CCGGGGGCTTCCEEECCSSCCCCC-----G-GG
T ss_pred CceEEEecCCCCCC-----CcC-ccccccCcEeecCcccccc-----cchhhhcCCCCCEEECCCCCCCCC-----c-cc
Confidence 46667777666654 233 5556667777777776663 333455566777777777766542 1 34
Q ss_pred hhCCCcCEEecCCCCCChhH-HHHHHHHHhcCCCccEEEccCCCCChH
Q 007577 468 KFHGNINTLKLGWCQIGASG-AEFVADMLRYNNTISILDLRANGLRDE 514 (597)
Q Consensus 468 ~~~~~L~~L~L~~n~i~~~~-~~~l~~~l~~~~~L~~L~l~~n~i~~~ 514 (597)
..+++|++|+|++|+|+... +. .+..+++|+.|++++|.++..
T Consensus 505 ~~l~~L~~L~Ls~N~l~~~~~p~----~l~~l~~L~~L~L~~N~l~~~ 548 (567)
T 1dce_A 505 ANLPRLQELLLCNNRLQQSAAIQ----PLVSCPRLVLLNLQGNSLCQE 548 (567)
T ss_dssp TTCSSCCEEECCSSCCCSSSTTG----GGGGCTTCCEEECTTSGGGGS
T ss_pred CCCCCCcEEECCCCCCCCCCCcH----HHhcCCCCCEEEecCCcCCCC
Confidence 55667777777777665542 22 234456777777777766543
No 114
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.29 E-value=2.8e-14 Score=153.76 Aligned_cols=126 Identities=13% Similarity=0.173 Sum_probs=84.0
Q ss_pred CCCEEEccCCCCChHHHHHHHHhhhcCccccceeeccCCCCChhHHHHHHHHHHcCCCCcEEEccCCCCCcHHHHHHHHH
Q 007577 331 SLRELHLHGNSIGDEGIRALMSGLSSRKGKLAVLDIGNNSISAKGAFHVAEYIKNCKSLLWINLYMNDIGDEGAEKIADA 410 (597)
Q Consensus 331 ~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~ 410 (597)
.|+.|++++|.++.. +. + ..+++|+.|+|++|.++. ++..+..+++|++|+|++|.|+. ++ .
T Consensus 442 ~L~~L~Ls~n~l~~l--p~----~-~~l~~L~~L~Ls~N~l~~-----lp~~~~~l~~L~~L~Ls~N~l~~-----lp-~ 503 (567)
T 1dce_A 442 DVRVLHLAHKDLTVL--CH----L-EQLLLVTHLDLSHNRLRA-----LPPALAALRCLEVLQASDNALEN-----VD-G 503 (567)
T ss_dssp TCSEEECTTSCCSSC--CC----G-GGGTTCCEEECCSSCCCC-----CCGGGGGCTTCCEEECCSSCCCC-----CG-G
T ss_pred CceEEEecCCCCCCC--cC----c-cccccCcEeecCcccccc-----cchhhhcCCCCCEEECCCCCCCC-----Cc-c
Confidence 577778877777652 11 1 344578888888887775 56667778888888888888776 33 5
Q ss_pred HhcCCCccEEEccCCCCChHHHHHHHHHhhcCCCcCEEECcCCCCCHHHHHHHHHHHhhCCCcCEEec
Q 007577 411 LKQNRTITTIDLGGNNIHSKGASAIARVLKDNSVITSLDLAYNPIGADGAKALSEVLKFHGNINTLKL 478 (597)
Q Consensus 411 l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~L 478 (597)
+..+++|++|+|++|+|+... .+..+..+++|+.|+|++|+++... ..+...+..+++|+.|++
T Consensus 504 l~~l~~L~~L~Ls~N~l~~~~---~p~~l~~l~~L~~L~L~~N~l~~~~-~~~~~l~~~lp~L~~L~l 567 (567)
T 1dce_A 504 VANLPRLQELLLCNNRLQQSA---AIQPLVSCPRLVLLNLQGNSLCQEE-GIQERLAEMLPSVSSILT 567 (567)
T ss_dssp GTTCSSCCEEECCSSCCCSSS---TTGGGGGCTTCCEEECTTSGGGGSS-SCTTHHHHHCTTCSEEEC
T ss_pred cCCCCCCcEEECCCCCCCCCC---CcHHHhcCCCCCEEEecCCcCCCCc-cHHHHHHHHCcccCccCC
Confidence 667788888888888877632 0344566788888888888775431 122233444678888764
No 115
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.28 E-value=1.4e-13 Score=140.32 Aligned_cols=105 Identities=24% Similarity=0.193 Sum_probs=52.1
Q ss_pred cEEEccCCCCChhHHHHHHHHHhcCCCcCEEEecCCCCChHHHHHHHHHHH-cCCCccEEEeccCCCChhhHHHHHHHHh
Q 007577 221 KTLNLSGNPIGDEGVKCLCDILVDNAGVERLQLSSVDLRDEGAKAIAELLK-NNSILRVLELNNNMIDYSGFTSLAEALL 299 (597)
Q Consensus 221 ~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~~~l~~~~~~~l~~~l~-~~~~L~~L~Ls~n~i~~~~~~~l~~~l~ 299 (597)
+.++++++.++.. +..+ ...++.|+|++|.|+.... ..+. .+++|++|+|++|+|+... ...+.
T Consensus 21 ~~l~c~~~~l~~i-----P~~~--~~~l~~L~Ls~N~l~~l~~----~~~~~~l~~L~~L~L~~N~i~~i~----~~~~~ 85 (361)
T 2xot_A 21 NILSCSKQQLPNV-----PQSL--PSYTALLDLSHNNLSRLRA----EWTPTRLTNLHSLLLSHNHLNFIS----SEAFV 85 (361)
T ss_dssp TEEECCSSCCSSC-----CSSC--CTTCSEEECCSSCCCEECT----TSSSSCCTTCCEEECCSSCCCEEC----TTTTT
T ss_pred CEEEeCCCCcCcc-----CccC--CCCCCEEECCCCCCCccCh----hhhhhcccccCEEECCCCcCCccC----hhhcc
Confidence 5666766666542 1111 2446666666666665321 1122 3456666666666654321 12234
Q ss_pred hCCCccEEEcCCCCCChHHHHHHHHHhhcCCCCCEEEccCCCCCh
Q 007577 300 ENSTIRSLHLNGNYGGALGANALAKGLEGNKSLRELHLHGNSIGD 344 (597)
Q Consensus 300 ~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~ 344 (597)
.+++|++|+|++|.++.... ..+..+++|+.|+|++|.+..
T Consensus 86 ~l~~L~~L~Ls~N~l~~~~~----~~~~~l~~L~~L~L~~N~i~~ 126 (361)
T 2xot_A 86 PVPNLRYLDLSSNHLHTLDE----FLFSDLQALEVLLLYNNHIVV 126 (361)
T ss_dssp TCTTCCEEECCSSCCCEECT----TTTTTCTTCCEEECCSSCCCE
T ss_pred CCCCCCEEECCCCcCCcCCH----HHhCCCcCCCEEECCCCcccE
Confidence 45555555555555544322 223445555555555555543
No 116
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.28 E-value=7e-14 Score=142.68 Aligned_cols=63 Identities=16% Similarity=0.131 Sum_probs=27.0
Q ss_pred cccceeeccCCCCChhHHHHHHHHHHcCCCCcEEEccCCCCCcHHHHHHHHHHhcCCCccEEEccCCCCCh
Q 007577 359 GKLAVLDIGNNSISAKGAFHVAEYIKNCKSLLWINLYMNDIGDEGAEKIADALKQNRTITTIDLGGNNIHS 429 (597)
Q Consensus 359 ~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~ 429 (597)
++|+.|+|++|.|+.. .+..+..+++|++|+|++|.|+.. ....+..+++|++|+|++|.|+.
T Consensus 64 ~~L~~L~L~~N~i~~i----~~~~~~~l~~L~~L~Ls~N~l~~~----~~~~~~~l~~L~~L~L~~N~i~~ 126 (361)
T 2xot_A 64 TNLHSLLLSHNHLNFI----SSEAFVPVPNLRYLDLSSNHLHTL----DEFLFSDLQALEVLLLYNNHIVV 126 (361)
T ss_dssp TTCCEEECCSSCCCEE----CTTTTTTCTTCCEEECCSSCCCEE----CTTTTTTCTTCCEEECCSSCCCE
T ss_pred cccCEEECCCCcCCcc----ChhhccCCCCCCEEECCCCcCCcC----CHHHhCCCcCCCEEECCCCcccE
Confidence 3455555555554441 112334444555555555544432 11123334444444444444443
No 117
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.25 E-value=4.5e-12 Score=111.59 Aligned_cols=132 Identities=15% Similarity=0.209 Sum_probs=65.4
Q ss_pred cccceeeccCCCCChhHHHHHHHHHHcCCCCcEEEccCCCCCcHHHHHHHHHHhcCCCccEEEccCCCCChHHHHHHHHH
Q 007577 359 GKLAVLDIGNNSISAKGAFHVAEYIKNCKSLLWINLYMNDIGDEGAEKIADALKQNRTITTIDLGGNNIHSKGASAIARV 438 (597)
Q Consensus 359 ~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~ 438 (597)
++|+.|++++|.+++. .++..+..+++|++|++++|.+++. ..+..+++|++|++++|.++.. ++..
T Consensus 17 ~~l~~L~l~~n~l~~~---~~~~~~~~l~~L~~L~l~~n~l~~~------~~~~~l~~L~~L~Ls~n~i~~~----~~~~ 83 (149)
T 2je0_A 17 SDVKELVLDNSRSNEG---KLEGLTDEFEELEFLSTINVGLTSI------ANLPKLNKLKKLELSDNRVSGG----LEVL 83 (149)
T ss_dssp GGCSEEECTTCBCBTT---BCCSCCTTCTTCCEEECTTSCCCCC------TTCCCCTTCCEEECCSSCCCSC----THHH
T ss_pred ccCeEEEccCCcCChh---HHHHHHhhcCCCcEEECcCCCCCCc------hhhhcCCCCCEEECCCCcccch----HHHH
Confidence 3566666666655511 1333344556666666666665542 3344455666666666666553 2222
Q ss_pred hhcCCCcCEEECcCCCCCHHHHHHHHHHHhhCCCcCEEecCCCCCChhHHHHHHHHHhcCCCccEEEcc
Q 007577 439 LKDNSVITSLDLAYNPIGADGAKALSEVLKFHGNINTLKLGWCQIGASGAEFVADMLRYNNTISILDLR 507 (597)
Q Consensus 439 l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~ 507 (597)
+..+++|++|++++|.+++.. ....+..+++|++|++++|.++.... .....+..+++|+.||++
T Consensus 84 ~~~l~~L~~L~ls~N~i~~~~---~~~~~~~l~~L~~L~l~~N~l~~~~~-~~~~~~~~l~~L~~L~l~ 148 (149)
T 2je0_A 84 AEKCPNLTHLNLSGNKIKDLS---TIEPLKKLENLKSLDLFNCEVTNLND-YRENVFKLLPQLTYLDGY 148 (149)
T ss_dssp HHHCTTCCEEECTTSCCCSHH---HHGGGGGCTTCCEEECTTCGGGGSTT-HHHHHHHHCTTCCEETTB
T ss_pred hhhCCCCCEEECCCCcCCChH---HHHHHhhCCCCCEEeCcCCcccchHH-HHHHHHHHCCCcccccCC
Confidence 333466666666666655421 11233445556666666665544322 011223334556655554
No 118
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.24 E-value=5.1e-13 Score=148.44 Aligned_cols=154 Identities=16% Similarity=0.255 Sum_probs=49.0
Q ss_pred CCcCEEEecCCCCChHHHHHHHHHHHcCCCccEEEeccCCCChhh-----HHHHHHHHhhCCCccEEEcCCCCCChHHHH
Q 007577 246 AGVERLQLSSVDLRDEGAKAIAELLKNNSILRVLELNNNMIDYSG-----FTSLAEALLENSTIRSLHLNGNYGGALGAN 320 (597)
Q Consensus 246 ~~L~~L~Ls~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~-----~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~ 320 (597)
+.++.|+|.++.+.... . ..|+.++|+.+.|.+.. +...+..+..+..|+.|+|++|.+.....
T Consensus 173 ~~~~~l~L~~n~~~~~~-----~-----~~l~~l~Ls~~~i~~~~~~~n~~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~- 241 (727)
T 4b8c_D 173 PLTPKIELFANGKDEAN-----Q-----ALLQHKKLSQYSIDEDDDIENRMVMPKDSKYDDQLWHALDLSNLQIFNISA- 241 (727)
T ss_dssp -----------------------------------------------------------CCCCCCEEECTTSCCSCCCG-
T ss_pred CccceEEeeCCCCCcch-----h-----hHhhcCccCcccccCccccccceecChhhhccCCCCcEEECCCCCCCCCCh-
Confidence 56788888887766521 1 12444445444443211 12223334445555555555555443221
Q ss_pred HHHHHhhcCCCCCEEEccCCCCChHHHHHHHHhhhcCccccceeeccCCCCChhHHHHHHHHHHcCCCCcEEEccCCCCC
Q 007577 321 ALAKGLEGNKSLRELHLHGNSIGDEGIRALMSGLSSRKGKLAVLDIGNNSISAKGAFHVAEYIKNCKSLLWINLYMNDIG 400 (597)
Q Consensus 321 ~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~ 400 (597)
.+..+++|++|+|++|.++. ++..+ ..+++|+.|+|++|.|+. ++..+..+++|++|+|++|.|+
T Consensus 242 ----~~~~l~~L~~L~Ls~N~l~~-----lp~~~-~~l~~L~~L~Ls~N~l~~-----lp~~~~~l~~L~~L~L~~N~l~ 306 (727)
T 4b8c_D 242 ----NIFKYDFLTRLYLNGNSLTE-----LPAEI-KNLSNLRVLDLSHNRLTS-----LPAELGSCFQLKYFYFFDNMVT 306 (727)
T ss_dssp ----GGGGCCSCSCCBCTTSCCSC-----CCGGG-GGGTTCCEEECTTSCCSS-----CCSSGGGGTTCSEEECCSSCCC
T ss_pred ----hhcCCCCCCEEEeeCCcCcc-----cChhh-hCCCCCCEEeCcCCcCCc-----cChhhcCCCCCCEEECCCCCCC
Confidence 12244555555555555442 11111 223345555555555443 3334444455555555555444
Q ss_pred cHHHHHHHHHHhcCCCccEEEccCCCCChH
Q 007577 401 DEGAEKIADALKQNRTITTIDLGGNNIHSK 430 (597)
Q Consensus 401 ~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~ 430 (597)
. ++..+..+++|++|+|++|.|+..
T Consensus 307 ~-----lp~~~~~l~~L~~L~L~~N~l~~~ 331 (727)
T 4b8c_D 307 T-----LPWEFGNLCNLQFLGVEGNPLEKQ 331 (727)
T ss_dssp C-----CCSSTTSCTTCCCEECTTSCCCSH
T ss_pred c-----cChhhhcCCCccEEeCCCCccCCC
Confidence 2 233344444555555555554443
No 119
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.24 E-value=7.2e-13 Score=125.86 Aligned_cols=63 Identities=17% Similarity=0.181 Sum_probs=27.3
Q ss_pred cCCCCcEEEccCCCCCcHHHHHHHHHHhcCCCccEEEccCCCCChHHHHHHHHHhhcCCCcCEEECcCCCCC
Q 007577 385 NCKSLLWINLYMNDIGDEGAEKIADALKQNRTITTIDLGGNNIHSKGASAIARVLKDNSVITSLDLAYNPIG 456 (597)
Q Consensus 385 ~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~ 456 (597)
.+++|++|+|++|.++. ++..+..+++|++|+|++|+|+.... ..+..+++|+.|++++|++.
T Consensus 110 ~l~~L~~L~Ls~N~l~~-----lp~~~~~l~~L~~L~L~~N~l~~~~~----~~~~~l~~L~~L~l~~N~~~ 172 (229)
T 3e6j_A 110 RLVHLKELFMCCNKLTE-----LPRGIERLTHLTHLALDQNQLKSIPH----GAFDRLSSLTHAYLFGNPWD 172 (229)
T ss_dssp TCTTCCEEECCSSCCCS-----CCTTGGGCTTCSEEECCSSCCCCCCT----TTTTTCTTCCEEECTTSCBC
T ss_pred cchhhCeEeccCCcccc-----cCcccccCCCCCEEECCCCcCCccCH----HHHhCCCCCCEEEeeCCCcc
Confidence 34444444444444442 22233344445555555554443211 12333455555555555443
No 120
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.22 E-value=1.6e-12 Score=116.99 Aligned_cols=136 Identities=15% Similarity=0.166 Sum_probs=61.8
Q ss_pred ccceeeccCCCCChhHHHHHHHHHHcCCCCcEEEccCCCCCcHHHHHHHHHHhcCCCccEEEccCCCCChHHHHHHHHHh
Q 007577 360 KLAVLDIGNNSISAKGAFHVAEYIKNCKSLLWINLYMNDIGDEGAEKIADALKQNRTITTIDLGGNNIHSKGASAIARVL 439 (597)
Q Consensus 360 ~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l 439 (597)
+|+.|++++|.+++. .++..+..+++|++|++++|.+++. ..+..+++|++|++++|.++.. +...+
T Consensus 25 ~L~~L~l~~n~l~~~---~i~~~~~~l~~L~~L~l~~n~l~~~------~~~~~l~~L~~L~Ls~N~l~~~----~~~~~ 91 (168)
T 2ell_A 25 AVRELVLDNCKSNDG---KIEGLTAEFVNLEFLSLINVGLISV------SNLPKLPKLKKLELSENRIFGG----LDMLA 91 (168)
T ss_dssp SCSEEECCSCBCBTT---BCSSCCGGGGGCCEEEEESSCCCCC------SSCCCCSSCCEEEEESCCCCSC----CCHHH
T ss_pred cCCEEECCCCCCChh---hHHHHHHhCCCCCEEeCcCCCCCCh------hhhccCCCCCEEECcCCcCchH----HHHHH
Confidence 455555555554410 1233334455555555555555442 2334455555555555555442 12222
Q ss_pred hcCCCcCEEECcCCCCCHHHHHHHHHHHhhCCCcCEEecCCCCCChhHHHHHHHHHhcCCCccEEEccCCCCC
Q 007577 440 KDNSVITSLDLAYNPIGADGAKALSEVLKFHGNINTLKLGWCQIGASGAEFVADMLRYNNTISILDLRANGLR 512 (597)
Q Consensus 440 ~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~n~i~ 512 (597)
..+++|++|++++|.+++... ...+..+++|++|++++|.++.... .....+..+++|+.|++++|.+.
T Consensus 92 ~~l~~L~~L~Ls~N~l~~~~~---~~~l~~l~~L~~L~l~~N~l~~~~~-~~~~~~~~l~~L~~L~l~~n~~~ 160 (168)
T 2ell_A 92 EKLPNLTHLNLSGNKLKDIST---LEPLKKLECLKSLDLFNCEVTNLND-YRESVFKLLPQLTYLDGYDREDQ 160 (168)
T ss_dssp HHCTTCCEEECBSSSCCSSGG---GGGGSSCSCCCEEECCSSGGGTSTT-HHHHHHTTCSSCCEETTEETTSC
T ss_pred hhCCCCCEEeccCCccCcchh---HHHHhcCCCCCEEEeeCCcCcchHH-HHHHHHHhCccCcEecCCCCChh
Confidence 334555555555555544210 0223334555555555555543321 11123344455555555555443
No 121
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.22 E-value=5.7e-13 Score=126.55 Aligned_cols=88 Identities=11% Similarity=0.056 Sum_probs=38.3
Q ss_pred HcCCCCcEEEccCCCCCcHHHHHHHHHHhcCCCccEEEccCCCCChHHHHHHHHHhhcCCCcCEEECcCCCCCHHHHHHH
Q 007577 384 KNCKSLLWINLYMNDIGDEGAEKIADALKQNRTITTIDLGGNNIHSKGASAIARVLKDNSVITSLDLAYNPIGADGAKAL 463 (597)
Q Consensus 384 ~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l 463 (597)
..+++|++|+|++|.++.. ....+..+++|++|+|++|+|+. ++..+..+++|++|+|++|.++....
T Consensus 85 ~~l~~L~~L~Ls~N~l~~l----~~~~~~~l~~L~~L~Ls~N~l~~-----lp~~~~~l~~L~~L~L~~N~l~~~~~--- 152 (229)
T 3e6j_A 85 DSLTQLTVLDLGTNQLTVL----PSAVFDRLVHLKELFMCCNKLTE-----LPRGIERLTHLTHLALDQNQLKSIPH--- 152 (229)
T ss_dssp TTCTTCCEEECCSSCCCCC----CTTTTTTCTTCCEEECCSSCCCS-----CCTTGGGCTTCSEEECCSSCCCCCCT---
T ss_pred ccCCCcCEEECCCCcCCcc----ChhHhCcchhhCeEeccCCcccc-----cCcccccCCCCCEEECCCCcCCccCH---
Confidence 3444455555555544431 11122334555555555555542 22223444555555555554443211
Q ss_pred HHHHhhCCCcCEEecCCCCCC
Q 007577 464 SEVLKFHGNINTLKLGWCQIG 484 (597)
Q Consensus 464 ~~~l~~~~~L~~L~L~~n~i~ 484 (597)
..+..+++|++|++++|.+.
T Consensus 153 -~~~~~l~~L~~L~l~~N~~~ 172 (229)
T 3e6j_A 153 -GAFDRLSSLTHAYLFGNPWD 172 (229)
T ss_dssp -TTTTTCTTCCEEECTTSCBC
T ss_pred -HHHhCCCCCCEEEeeCCCcc
Confidence 12233445555555555443
No 122
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.22 E-value=5.3e-12 Score=111.10 Aligned_cols=131 Identities=14% Similarity=0.077 Sum_probs=88.4
Q ss_pred CCCCcEEEccCCCCCcHHHHHHHHHHhcCCCccEEEccCCCCChHHHHHHHHHhhcCCCcCEEECcCCCCCHHHHHHHHH
Q 007577 386 CKSLLWINLYMNDIGDEGAEKIADALKQNRTITTIDLGGNNIHSKGASAIARVLKDNSVITSLDLAYNPIGADGAKALSE 465 (597)
Q Consensus 386 ~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~ 465 (597)
.++|++|++++|.+++.. ++..+..+++|++|++++|.++.. ..+..+++|++|++++|.++.. +..
T Consensus 16 ~~~l~~L~l~~n~l~~~~---~~~~~~~l~~L~~L~l~~n~l~~~------~~~~~l~~L~~L~Ls~n~i~~~----~~~ 82 (149)
T 2je0_A 16 PSDVKELVLDNSRSNEGK---LEGLTDEFEELEFLSTINVGLTSI------ANLPKLNKLKKLELSDNRVSGG----LEV 82 (149)
T ss_dssp GGGCSEEECTTCBCBTTB---CCSCCTTCTTCCEEECTTSCCCCC------TTCCCCTTCCEEECCSSCCCSC----THH
T ss_pred CccCeEEEccCCcCChhH---HHHHHhhcCCCcEEECcCCCCCCc------hhhhcCCCCCEEECCCCcccch----HHH
Confidence 367888888888887211 334455678888888888888764 4466678888888888888763 233
Q ss_pred HHhhCCCcCEEecCCCCCChhHHHHHHHHHhcCCCccEEEccCCCCChHHH---HHHHHHHhhcCccccEEEccC
Q 007577 466 VLKFHGNINTLKLGWCQIGASGAEFVADMLRYNNTISILDLRANGLRDEGA---KCLAQSFKVVNEALTSIDLAF 537 (597)
Q Consensus 466 ~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~n~i~~~~~---~~l~~~l~~~n~~L~~L~Ls~ 537 (597)
.+..+++|++|++++|.+++... ...+..+++|++|++++|.+++... ..+..+ ++|+.||+++
T Consensus 83 ~~~~l~~L~~L~ls~N~i~~~~~---~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l-----~~L~~L~l~d 149 (149)
T 2je0_A 83 LAEKCPNLTHLNLSGNKIKDLST---IEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLL-----PQLTYLDGYD 149 (149)
T ss_dssp HHHHCTTCCEEECTTSCCCSHHH---HGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHC-----TTCCEETTBC
T ss_pred HhhhCCCCCEEECCCCcCCChHH---HHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHC-----CCcccccCCC
Confidence 44456788888888888876421 1335567888888888887776543 233332 6678877753
No 123
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.20 E-value=5.3e-13 Score=124.80 Aligned_cols=15 Identities=33% Similarity=0.313 Sum_probs=6.2
Q ss_pred cCCCCCEEEccCCCC
Q 007577 328 GNKSLRELHLHGNSI 342 (597)
Q Consensus 328 ~~~~L~~L~Ls~n~i 342 (597)
.+++|++|++++|.+
T Consensus 74 ~l~~L~~L~Ls~n~l 88 (208)
T 2o6s_A 74 KLTSLTYLNLSTNQL 88 (208)
T ss_dssp TCTTCCEEECCSSCC
T ss_pred CCCCcCEEECCCCcC
Confidence 334444444444433
No 124
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.20 E-value=8.9e-13 Score=123.27 Aligned_cols=133 Identities=18% Similarity=0.182 Sum_probs=69.2
Q ss_pred CCccEEEcCCCCCChHHHHHHHHHhhcCCCCCEEEccCCCCChHHHHHHHHhhhcCccccceeeccCCCCChhHHHHHHH
Q 007577 302 STIRSLHLNGNYGGALGANALAKGLEGNKSLRELHLHGNSIGDEGIRALMSGLSSRKGKLAVLDIGNNSISAKGAFHVAE 381 (597)
Q Consensus 302 ~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~ 381 (597)
++|++|++++|.++.... ..+..+++|++|++++|.++.. .......+++|++|++++|.++.. .+.
T Consensus 28 ~~l~~L~l~~n~l~~~~~----~~~~~l~~L~~L~l~~n~l~~~-----~~~~~~~l~~L~~L~Ls~n~l~~~----~~~ 94 (208)
T 2o6s_A 28 AQTTYLDLETNSLKSLPN----GVFDELTSLTQLYLGGNKLQSL-----PNGVFNKLTSLTYLNLSTNQLQSL----PNG 94 (208)
T ss_dssp TTCSEEECCSSCCCCCCT----TTTTTCTTCSEEECCSSCCCCC-----CTTTTTTCTTCCEEECCSSCCCCC----CTT
T ss_pred CCCcEEEcCCCccCcCCh----hhhcccccCcEEECCCCccCcc-----ChhhcCCCCCcCEEECCCCcCCcc----CHh
Confidence 455666666665554332 2244566677777777666542 111113344667777777666641 222
Q ss_pred HHHcCCCCcEEEccCCCCCcHHHHHHHHHHhcCCCccEEEccCCCCChHHHHHHHHHhhcCCCcCEEECcCCCC
Q 007577 382 YIKNCKSLLWINLYMNDIGDEGAEKIADALKQNRTITTIDLGGNNIHSKGASAIARVLKDNSVITSLDLAYNPI 455 (597)
Q Consensus 382 ~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i 455 (597)
.+..+++|++|++++|.++.. ....+..+++|++|++++|.++.... ..+..+++|++|++++|.+
T Consensus 95 ~~~~l~~L~~L~L~~N~l~~~----~~~~~~~l~~L~~L~l~~N~l~~~~~----~~~~~l~~L~~L~l~~N~~ 160 (208)
T 2o6s_A 95 VFDKLTQLKELALNTNQLQSL----PDGVFDKLTQLKDLRLYQNQLKSVPD----GVFDRLTSLQYIWLHDNPW 160 (208)
T ss_dssp TTTTCTTCCEEECCSSCCCCC----CTTTTTTCTTCCEEECCSSCCSCCCT----TTTTTCTTCCEEECCSCCB
T ss_pred HhcCccCCCEEEcCCCcCccc----CHhHhccCCcCCEEECCCCccceeCH----HHhccCCCccEEEecCCCe
Confidence 345566666666666666542 11223445566666666665554211 1233445566666665544
No 125
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.20 E-value=1.3e-12 Score=145.14 Aligned_cols=192 Identities=16% Similarity=0.151 Sum_probs=97.6
Q ss_pred CCCcEEEcCCCCCCHHHHHHHHHHhccCCCccEEEeccCCCCHH-----HHHHHHHHhhhCCCccEEEccCCCCChhHHH
Q 007577 162 RAFSSVDMSGRNFGDEGLFFLAESLGYNQTAEEVSFAANGITAA-----GIKAFDGVLQSNIALKTLNLSGNPIGDEGVK 236 (597)
Q Consensus 162 ~~L~~L~Ls~~~l~~~~~~~l~~~l~~~~~L~~L~L~~~~l~~~-----~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~ 236 (597)
+.++.|+|.++.+... ... .++.++|+.+.|... .+......+..++.|+.|+|++|.+..
T Consensus 173 ~~~~~l~L~~n~~~~~-----~~~-----~l~~l~Ls~~~i~~~~~~~n~~~~~~~~~~~l~~L~~L~Ls~n~l~~---- 238 (727)
T 4b8c_D 173 PLTPKIELFANGKDEA-----NQA-----LLQHKKLSQYSIDEDDDIENRMVMPKDSKYDDQLWHALDLSNLQIFN---- 238 (727)
T ss_dssp -----------------------------------------------------------CCCCCCEEECTTSCCSC----
T ss_pred CccceEEeeCCCCCcc-----hhh-----HhhcCccCcccccCccccccceecChhhhccCCCCcEEECCCCCCCC----
Confidence 4466777777665542 111 233333443333221 122344556677889999999988874
Q ss_pred HHHHHHhcCCCcCEEEecCCCCChHHHHHHHHHHHcCCCccEEEeccCCCChhhHHHHHHHHhhCCCccEEEcCCCCCCh
Q 007577 237 CLCDILVDNAGVERLQLSSVDLRDEGAKAIAELLKNNSILRVLELNNNMIDYSGFTSLAEALLENSTIRSLHLNGNYGGA 316 (597)
Q Consensus 237 ~l~~~l~~~~~L~~L~Ls~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~ 316 (597)
+...+..+++|++|+|++|.|+. ++..+..+++|++|+|++|.|+ .++..+..+++|++|+|++|.++.
T Consensus 239 -l~~~~~~l~~L~~L~Ls~N~l~~-----lp~~~~~l~~L~~L~Ls~N~l~-----~lp~~~~~l~~L~~L~L~~N~l~~ 307 (727)
T 4b8c_D 239 -ISANIFKYDFLTRLYLNGNSLTE-----LPAEIKNLSNLRVLDLSHNRLT-----SLPAELGSCFQLKYFYFFDNMVTT 307 (727)
T ss_dssp -CCGGGGGCCSCSCCBCTTSCCSC-----CCGGGGGGTTCCEEECTTSCCS-----SCCSSGGGGTTCSEEECCSSCCCC
T ss_pred -CChhhcCCCCCCEEEeeCCcCcc-----cChhhhCCCCCCEEeCcCCcCC-----ccChhhcCCCCCCEEECCCCCCCc
Confidence 33334467889999999998874 4455667788999999999885 345667778899999999998875
Q ss_pred HHHHHHHHHhhcCCCCCEEEccCCCCChHHHHHHHHhhhcCccccceeeccCCCCChhHHHHHHHHHHcCCCCcEEEccC
Q 007577 317 LGANALAKGLEGNKSLRELHLHGNSIGDEGIRALMSGLSSRKGKLAVLDIGNNSISAKGAFHVAEYIKNCKSLLWINLYM 396 (597)
Q Consensus 317 ~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~ 396 (597)
.+ ..+..+++|+.|+|++|.+.......+...- ..+..|+|++|.++.. + ...|+.|+++.
T Consensus 308 lp-----~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~----~~~~~l~l~~N~l~~~----~------p~~l~~l~l~~ 368 (727)
T 4b8c_D 308 LP-----WEFGNLCNLQFLGVEGNPLEKQFLKILTEKS----VTGLIFYLRDNRPEIP----L------PHERRFIEINT 368 (727)
T ss_dssp CC-----SSTTSCTTCCCEECTTSCCCSHHHHHHHHHH----HHHHHHHHHHCCCCCC----C------CCC--------
T ss_pred cC-----hhhhcCCCccEEeCCCCccCCCChHHHhhcc----hhhhHHhhccCcccCc----C------ccccceeEeec
Confidence 43 3477888999999999998765333332110 1233466777766652 1 23566666666
Q ss_pred C
Q 007577 397 N 397 (597)
Q Consensus 397 n 397 (597)
|
T Consensus 369 n 369 (727)
T 4b8c_D 369 D 369 (727)
T ss_dssp -
T ss_pred c
Confidence 5
No 126
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.20 E-value=8.5e-13 Score=124.50 Aligned_cols=14 Identities=29% Similarity=0.496 Sum_probs=6.6
Q ss_pred CCCcCEEECcCCCC
Q 007577 442 NSVITSLDLAYNPI 455 (597)
Q Consensus 442 ~~~L~~L~Ls~n~i 455 (597)
+++|++|+|++|++
T Consensus 152 l~~L~~L~L~~N~l 165 (220)
T 2v70_A 152 LHSLSTLNLLANPF 165 (220)
T ss_dssp CTTCCEEECCSCCE
T ss_pred CCCCCEEEecCcCC
Confidence 34444445544443
No 127
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.20 E-value=1.2e-13 Score=130.38 Aligned_cols=151 Identities=19% Similarity=0.204 Sum_probs=84.0
Q ss_pred CEEEccCCCCChHHHHHHHHhhhcCccccceeeccCCCCChhHHHHHHHHHHcCCCCcEEEccCCCCCcHHHHHHHHHHh
Q 007577 333 RELHLHGNSIGDEGIRALMSGLSSRKGKLAVLDIGNNSISAKGAFHVAEYIKNCKSLLWINLYMNDIGDEGAEKIADALK 412 (597)
Q Consensus 333 ~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~ 412 (597)
+.++.+++.++. ++..+ .++|+.|++++|.++.. .+..+..+++|++|+|++|.++.. .+..+.
T Consensus 14 ~~v~c~~~~l~~-----iP~~l---~~~l~~L~l~~n~i~~i----~~~~~~~l~~L~~L~Ls~N~i~~~----~~~~~~ 77 (220)
T 2v9t_B 14 NIVDCRGKGLTE-----IPTNL---PETITEIRLEQNTIKVI----PPGAFSPYKKLRRIDLSNNQISEL----APDAFQ 77 (220)
T ss_dssp TEEECTTSCCSS-----CCSSC---CTTCCEEECCSSCCCEE----CTTSSTTCTTCCEEECCSSCCCEE----CTTTTT
T ss_pred CEEEcCCCCcCc-----CCCcc---CcCCCEEECCCCcCCCc----CHhHhhCCCCCCEEECCCCcCCCc----CHHHhh
Confidence 567777776654 22111 13677777777777652 222455667777777777777653 233455
Q ss_pred cCCCccEEEccCCCCChHHHHHHHHHhhcCCCcCEEECcCCCCCHHHHHHHHHHHhhCCCcCEEecCCCCCChhHHHHHH
Q 007577 413 QNRTITTIDLGGNNIHSKGASAIARVLKDNSVITSLDLAYNPIGADGAKALSEVLKFHGNINTLKLGWCQIGASGAEFVA 492 (597)
Q Consensus 413 ~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~ 492 (597)
.+++|++|+|++|.|+.... ..+..+++|++|+|++|.|+.... ..+..+++|++|++++|.++.....
T Consensus 78 ~l~~L~~L~Ls~N~l~~l~~----~~f~~l~~L~~L~L~~N~l~~~~~----~~~~~l~~L~~L~L~~N~l~~~~~~--- 146 (220)
T 2v9t_B 78 GLRSLNSLVLYGNKITELPK----SLFEGLFSLQLLLLNANKINCLRV----DAFQDLHNLNLLSLYDNKLQTIAKG--- 146 (220)
T ss_dssp TCSSCCEEECCSSCCCCCCT----TTTTTCTTCCEEECCSSCCCCCCT----TTTTTCTTCCEEECCSSCCSCCCTT---
T ss_pred CCcCCCEEECCCCcCCccCH----hHccCCCCCCEEECCCCCCCEeCH----HHcCCCCCCCEEECCCCcCCEECHH---
Confidence 56677777777776664211 123445666777777666654321 2233445666666666665544322
Q ss_pred HHHhcCCCccEEEccCCCC
Q 007577 493 DMLRYNNTISILDLRANGL 511 (597)
Q Consensus 493 ~~l~~~~~L~~L~l~~n~i 511 (597)
.+..+++|+.|++++|.+
T Consensus 147 -~~~~l~~L~~L~L~~N~~ 164 (220)
T 2v9t_B 147 -TFSPLRAIQTMHLAQNPF 164 (220)
T ss_dssp -TTTTCTTCCEEECCSSCE
T ss_pred -HHhCCCCCCEEEeCCCCc
Confidence 123345566666666644
No 128
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.19 E-value=4.7e-13 Score=126.32 Aligned_cols=42 Identities=21% Similarity=0.223 Sum_probs=18.3
Q ss_pred HcCCCCcEEEccCCCCCcHHHHHHHHHHhcCCCccEEEccCCCCCh
Q 007577 384 KNCKSLLWINLYMNDIGDEGAEKIADALKQNRTITTIDLGGNNIHS 429 (597)
Q Consensus 384 ~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~ 429 (597)
..+++|++|+|++|.++.. .+..+..+++|++|+|++|.|+.
T Consensus 101 ~~l~~L~~L~L~~N~l~~~----~~~~~~~l~~L~~L~L~~N~l~~ 142 (220)
T 2v9t_B 101 EGLFSLQLLLLNANKINCL----RVDAFQDLHNLNLLSLYDNKLQT 142 (220)
T ss_dssp TTCTTCCEEECCSSCCCCC----CTTTTTTCTTCCEEECCSSCCSC
T ss_pred cCCCCCCEEECCCCCCCEe----CHHHcCCCCCCCEEECCCCcCCE
Confidence 3444455555555544432 11223334445555555554443
No 129
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.18 E-value=2.6e-12 Score=115.66 Aligned_cols=135 Identities=16% Similarity=0.064 Sum_probs=89.3
Q ss_pred CCCCcEEEccCCCCCcHHHHHHHHHHhcCCCccEEEccCCCCChHHHHHHHHHhhcCCCcCEEECcCCCCCHHHHHHHHH
Q 007577 386 CKSLLWINLYMNDIGDEGAEKIADALKQNRTITTIDLGGNNIHSKGASAIARVLKDNSVITSLDLAYNPIGADGAKALSE 465 (597)
Q Consensus 386 ~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~ 465 (597)
.++|++|++++|.+++.. ++..+..+++|++|++++|.|+.. ..+..+++|++|++++|.++.. +..
T Consensus 23 ~~~L~~L~l~~n~l~~~~---i~~~~~~l~~L~~L~l~~n~l~~~------~~~~~l~~L~~L~Ls~N~l~~~----~~~ 89 (168)
T 2ell_A 23 PAAVRELVLDNCKSNDGK---IEGLTAEFVNLEFLSLINVGLISV------SNLPKLPKLKKLELSENRIFGG----LDM 89 (168)
T ss_dssp TTSCSEEECCSCBCBTTB---CSSCCGGGGGCCEEEEESSCCCCC------SSCCCCSSCCEEEEESCCCCSC----CCH
T ss_pred cccCCEEECCCCCCChhh---HHHHHHhCCCCCEEeCcCCCCCCh------hhhccCCCCCEEECcCCcCchH----HHH
Confidence 467888888888877211 334455678888888888888764 3456678888888888887653 223
Q ss_pred HHhhCCCcCEEecCCCCCChhHHHHHHHHHhcCCCccEEEccCCCCChHHH---HHHHHHHhhcCccccEEEccCCCCC
Q 007577 466 VLKFHGNINTLKLGWCQIGASGAEFVADMLRYNNTISILDLRANGLRDEGA---KCLAQSFKVVNEALTSIDLAFNEIR 541 (597)
Q Consensus 466 ~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~n~i~~~~~---~~l~~~l~~~n~~L~~L~Ls~n~i~ 541 (597)
.+..+++|++|++++|.+++... ...+..+++|+.|++++|.+++... ..+..+ ++|+.|++++|.+.
T Consensus 90 ~~~~l~~L~~L~Ls~N~l~~~~~---~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l-----~~L~~L~l~~n~~~ 160 (168)
T 2ell_A 90 LAEKLPNLTHLNLSGNKLKDIST---LEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLL-----PQLTYLDGYDREDQ 160 (168)
T ss_dssp HHHHCTTCCEEECBSSSCCSSGG---GGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTC-----SSCCEETTEETTSC
T ss_pred HHhhCCCCCEEeccCCccCcchh---HHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhC-----ccCcEecCCCCChh
Confidence 34456788888888888776421 0234556778888888887765433 122222 66777777777654
No 130
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.18 E-value=7.5e-13 Score=124.89 Aligned_cols=133 Identities=23% Similarity=0.197 Sum_probs=62.5
Q ss_pred ccceeeccCCCCChhHHHHHHHHHHcCCCCcEEEccCCCCCcHHHHHHHHHHhcCCCccEEEccCCCCChHHHHHHHHHh
Q 007577 360 KLAVLDIGNNSISAKGAFHVAEYIKNCKSLLWINLYMNDIGDEGAEKIADALKQNRTITTIDLGGNNIHSKGASAIARVL 439 (597)
Q Consensus 360 ~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l 439 (597)
.++.|++++|.++... ....+..+++|++|+|++|.|+.. ....+..+++|++|+|++|.|+.... ..+
T Consensus 33 ~~~~L~L~~N~l~~~~---~~~~~~~l~~L~~L~L~~N~i~~i----~~~~~~~l~~L~~L~Ls~N~l~~~~~----~~~ 101 (220)
T 2v70_A 33 YTAELRLNNNEFTVLE---ATGIFKKLPQLRKINFSNNKITDI----EEGAFEGASGVNEILLTSNRLENVQH----KMF 101 (220)
T ss_dssp TCSEEECCSSCCCEEC---CCCCGGGCTTCCEEECCSSCCCEE----CTTTTTTCTTCCEEECCSSCCCCCCG----GGG
T ss_pred CCCEEEcCCCcCCccC---chhhhccCCCCCEEECCCCcCCEE----CHHHhCCCCCCCEEECCCCccCccCH----hHh
Confidence 3455555555554410 001234555566666655555542 11234445555566665555554321 123
Q ss_pred hcCCCcCEEECcCCCCCHHHHHHHHHHHhhCCCcCEEecCCCCCChhHHHHHHHHHhcCCCccEEEccCCCC
Q 007577 440 KDNSVITSLDLAYNPIGADGAKALSEVLKFHGNINTLKLGWCQIGASGAEFVADMLRYNNTISILDLRANGL 511 (597)
Q Consensus 440 ~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~n~i 511 (597)
..+++|++|+|++|.|+.... ..+..+++|++|++++|+++...+.. +..+++|+.|++++|.+
T Consensus 102 ~~l~~L~~L~Ls~N~l~~~~~----~~~~~l~~L~~L~L~~N~l~~~~~~~----~~~l~~L~~L~L~~N~l 165 (220)
T 2v70_A 102 KGLESLKTLMLRSNRITCVGN----DSFIGLSSVRLLSLYDNQITTVAPGA----FDTLHSLSTLNLLANPF 165 (220)
T ss_dssp TTCSSCCEEECTTSCCCCBCT----TSSTTCTTCSEEECTTSCCCCBCTTT----TTTCTTCCEEECCSCCE
T ss_pred cCCcCCCEEECCCCcCCeECH----hHcCCCccCCEEECCCCcCCEECHHH----hcCCCCCCEEEecCcCC
Confidence 344556666666655543211 12233455555666555555432222 23345566666666544
No 131
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.17 E-value=1e-12 Score=121.78 Aligned_cols=110 Identities=25% Similarity=0.253 Sum_probs=47.6
Q ss_pred HHhhCCCccEEEcCCCCCChHHHHHHHHHhhcCCCCCEEEccCCCCChHHHHHHHHhhhcCccccceeeccCCCCChhHH
Q 007577 297 ALLENSTIRSLHLNGNYGGALGANALAKGLEGNKSLRELHLHGNSIGDEGIRALMSGLSSRKGKLAVLDIGNNSISAKGA 376 (597)
Q Consensus 297 ~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~ 376 (597)
.+..+++|++|++++|.++..+ .+..+++|+.|++++|.++.. +.... .+++|+.|++++|.++.
T Consensus 43 ~~~~l~~L~~L~ls~n~l~~l~------~~~~l~~L~~L~l~~n~l~~l--~~~~~----~~~~L~~L~L~~N~l~~--- 107 (198)
T 1ds9_A 43 TLSTLKACKHLALSTNNIEKIS------SLSGMENLRILSLGRNLIKKI--ENLDA----VADTLEELWISYNQIAS--- 107 (198)
T ss_dssp HHHHTTTCSEEECSEEEESCCC------CHHHHTTCCEEEEEEEEECSC--SSHHH----HHHHCSEEEEEEEECCC---
T ss_pred HHhcCCCCCEEECCCCCCcccc------ccccCCCCCEEECCCCCcccc--cchhh----cCCcCCEEECcCCcCCc---
Confidence 3444555555555555444321 233445555555555544321 11111 11245555555555554
Q ss_pred HHHHHHHHcCCCCcEEEccCCCCCcHHHHHHHHHHhcCCCccEEEccCCCC
Q 007577 377 FHVAEYIKNCKSLLWINLYMNDIGDEGAEKIADALKQNRTITTIDLGGNNI 427 (597)
Q Consensus 377 ~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l 427 (597)
++ .+..+++|++|++++|.+++... ...+..+++|++|++++|.+
T Consensus 108 --l~-~~~~l~~L~~L~l~~N~i~~~~~---~~~l~~l~~L~~L~l~~N~l 152 (198)
T 1ds9_A 108 --LS-GIEKLVNLRVLYMSNNKITNWGE---IDKLAALDKLEDLLLAGNPL 152 (198)
T ss_dssp --HH-HHHHHHHSSEEEESEEECCCHHH---HHHHTTTTTCSEEEECSCHH
T ss_pred --CC-ccccCCCCCEEECCCCcCCchhH---HHHHhcCCCCCEEEecCCcc
Confidence 22 24444455555555555544211 02233444555555555544
No 132
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.16 E-value=5.6e-13 Score=123.59 Aligned_cols=111 Identities=23% Similarity=0.254 Sum_probs=61.3
Q ss_pred HhhcCCCCCEEEccCCCCChHHHHHHHHhhhcCccccceeeccCCCCChhHHHHHHHHHHcCCCCcEEEccCCCCCcHHH
Q 007577 325 GLEGNKSLRELHLHGNSIGDEGIRALMSGLSSRKGKLAVLDIGNNSISAKGAFHVAEYIKNCKSLLWINLYMNDIGDEGA 404 (597)
Q Consensus 325 ~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~ 404 (597)
.+..+++|++|++++|.+++.. .+ ..+++|+.|++++|.++. ++..+..+++|++|++++|.+++.
T Consensus 43 ~~~~l~~L~~L~ls~n~l~~l~--~~-----~~l~~L~~L~l~~n~l~~-----l~~~~~~~~~L~~L~L~~N~l~~l-- 108 (198)
T 1ds9_A 43 TLSTLKACKHLALSTNNIEKIS--SL-----SGMENLRILSLGRNLIKK-----IENLDAVADTLEELWISYNQIASL-- 108 (198)
T ss_dssp HHHHTTTCSEEECSEEEESCCC--CH-----HHHTTCCEEEEEEEEECS-----CSSHHHHHHHCSEEEEEEEECCCH--
T ss_pred HHhcCCCCCEEECCCCCCcccc--cc-----ccCCCCCEEECCCCCccc-----ccchhhcCCcCCEEECcCCcCCcC--
Confidence 3556677777777777665421 11 122366777777766654 334444455666666666666552
Q ss_pred HHHHHHHhcCCCccEEEccCCCCChHHHHHHHHHhhcCCCcCEEECcCCCCC
Q 007577 405 EKIADALKQNRTITTIDLGGNNIHSKGASAIARVLKDNSVITSLDLAYNPIG 456 (597)
Q Consensus 405 ~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~ 456 (597)
+ .+..+++|++|++++|.|++.... ..+..+++|++|++++|++.
T Consensus 109 ---~-~~~~l~~L~~L~l~~N~i~~~~~~---~~l~~l~~L~~L~l~~N~l~ 153 (198)
T 1ds9_A 109 ---S-GIEKLVNLRVLYMSNNKITNWGEI---DKLAALDKLEDLLLAGNPLY 153 (198)
T ss_dssp ---H-HHHHHHHSSEEEESEEECCCHHHH---HHHTTTTTCSEEEECSCHHH
T ss_pred ---C-ccccCCCCCEEECCCCcCCchhHH---HHHhcCCCCCEEEecCCccc
Confidence 1 233445666666666666653221 23444566666666666543
No 133
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.13 E-value=1.1e-11 Score=112.57 Aligned_cols=111 Identities=18% Similarity=0.169 Sum_probs=45.9
Q ss_pred CCcEEEccCCCCCcHHHHHHHHHHhcCCCccEEEccCCCCChHHHHHHHHHhhcCCCcCEEECcCCCCCHHHHHHHHHHH
Q 007577 388 SLLWINLYMNDIGDEGAEKIADALKQNRTITTIDLGGNNIHSKGASAIARVLKDNSVITSLDLAYNPIGADGAKALSEVL 467 (597)
Q Consensus 388 ~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l 467 (597)
+|++|++++|.+++. ..+..+++|++|++++|.|+.... ..+..+++|++|++++|.+++... + ..+
T Consensus 43 ~L~~L~Ls~N~l~~~------~~l~~l~~L~~L~Ls~N~l~~~~~----~~~~~l~~L~~L~L~~N~i~~~~~--~-~~l 109 (176)
T 1a9n_A 43 QFDAIDFSDNEIRKL------DGFPLLRRLKTLLVNNNRICRIGE----GLDQALPDLTELILTNNSLVELGD--L-DPL 109 (176)
T ss_dssp CCSEEECCSSCCCEE------CCCCCCSSCCEEECCSSCCCEECS----CHHHHCTTCCEEECCSCCCCCGGG--G-GGG
T ss_pred CCCEEECCCCCCCcc------cccccCCCCCEEECCCCcccccCc----chhhcCCCCCEEECCCCcCCcchh--h-Hhh
Confidence 444444444444431 223334445555555554443211 111233555555555555433110 0 123
Q ss_pred hhCCCcCEEecCCCCCChhHHHHHHHHHhcCCCccEEEccCCCCC
Q 007577 468 KFHGNINTLKLGWCQIGASGAEFVADMLRYNNTISILDLRANGLR 512 (597)
Q Consensus 468 ~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~n~i~ 512 (597)
..+++|++|++++|.++.... .-...+..+++|+.||+++|.+.
T Consensus 110 ~~l~~L~~L~l~~N~i~~~~~-~~~~~~~~l~~L~~Ld~~~n~~~ 153 (176)
T 1a9n_A 110 ASLKSLTYLCILRNPVTNKKH-YRLYVIYKVPQVRVLDFQKVKLK 153 (176)
T ss_dssp GGCTTCCEEECCSSGGGGSTT-HHHHHHHHCTTCSEETTEECCHH
T ss_pred hcCCCCCEEEecCCCCCCcHh-HHHHHHHHCCccceeCCCcCCHH
Confidence 334455555555555433211 11112334455555555555443
No 134
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.11 E-value=1.6e-11 Score=111.30 Aligned_cols=83 Identities=19% Similarity=0.167 Sum_probs=36.7
Q ss_pred CCCccEEEcCCCCCChHHHHHHHHHhhcC-CCCCEEEccCCCCChHHHHHHHHhhhcCccccceeeccCCCCChhHHHHH
Q 007577 301 NSTIRSLHLNGNYGGALGANALAKGLEGN-KSLRELHLHGNSIGDEGIRALMSGLSSRKGKLAVLDIGNNSISAKGAFHV 379 (597)
Q Consensus 301 ~~~L~~L~L~~n~i~~~~~~~l~~~l~~~-~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l 379 (597)
+.+|++|++++|.++... . +..+ ++|++|++++|.+++. ..+ ..+++|+.|++++|.++.. .
T Consensus 18 ~~~L~~L~l~~n~l~~i~-----~-~~~~~~~L~~L~Ls~N~l~~~------~~l-~~l~~L~~L~Ls~N~l~~~----~ 80 (176)
T 1a9n_A 18 AVRDRELDLRGYKIPVIE-----N-LGATLDQFDAIDFSDNEIRKL------DGF-PLLRRLKTLLVNNNRICRI----G 80 (176)
T ss_dssp TTSCEEEECTTSCCCSCC-----C-GGGGTTCCSEEECCSSCCCEE------CCC-CCCSSCCEEECCSSCCCEE----C
T ss_pred cCCceEEEeeCCCCchhH-----H-hhhcCCCCCEEECCCCCCCcc------ccc-ccCCCCCEEECCCCccccc----C
Confidence 455566666665554321 1 1222 2555555555555441 111 2333455555555554431 1
Q ss_pred HHHHHcCCCCcEEEccCCCCC
Q 007577 380 AEYIKNCKSLLWINLYMNDIG 400 (597)
Q Consensus 380 ~~~l~~~~~L~~L~Ls~n~l~ 400 (597)
+..+..+++|++|++++|.++
T Consensus 81 ~~~~~~l~~L~~L~L~~N~i~ 101 (176)
T 1a9n_A 81 EGLDQALPDLTELILTNNSLV 101 (176)
T ss_dssp SCHHHHCTTCCEEECCSCCCC
T ss_pred cchhhcCCCCCEEECCCCcCC
Confidence 112244445555555555444
No 135
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.08 E-value=2e-13 Score=138.60 Aligned_cols=105 Identities=13% Similarity=0.075 Sum_probs=51.9
Q ss_pred cEEEeccCCCCHHHHHHHHHHhhhCCCccEEEccCCCCChhHHHHHHHHHhcCCCcCEEEecCCCCChHHHHHHH-HHHH
Q 007577 193 EEVSFAANGITAAGIKAFDGVLQSNIALKTLNLSGNPIGDEGVKCLCDILVDNAGVERLQLSSVDLRDEGAKAIA-ELLK 271 (597)
Q Consensus 193 ~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~~~l~~~~~~~l~-~~l~ 271 (597)
+.++.++++++.. +..+ .+++++|+|++|+|+.... ..+..+++|++|+|++|.+... +. ..+.
T Consensus 12 ~~v~C~~~~Lt~i-----P~~l--~~~l~~L~Ls~N~i~~i~~----~~f~~l~~L~~L~Ls~N~i~~~----i~~~~f~ 76 (350)
T 4ay9_X 12 RVFLCQESKVTEI-----PSDL--PRNAIELRFVLTKLRVIQK----GAFSGFGDLEKIEISQNDVLEV----IEADVFS 76 (350)
T ss_dssp TEEEEESTTCCSC-----CTTC--CTTCSEEEEESCCCSEECT----TSSTTCTTCCEEEEECCTTCCE----ECTTSBC
T ss_pred CEEEecCCCCCcc-----CcCc--CCCCCEEEccCCcCCCcCH----HHHcCCCCCCEEECcCCCCCCc----cChhHhh
Confidence 4566666666532 1111 1357777777777764321 1234456777777777765331 11 1223
Q ss_pred cCCCccE-EEeccCCCChhhHHHHHHHHhhCCCccEEEcCCCCCCh
Q 007577 272 NNSILRV-LELNNNMIDYSGFTSLAEALLENSTIRSLHLNGNYGGA 316 (597)
Q Consensus 272 ~~~~L~~-L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~ 316 (597)
+++++.+ +.+++|+++.-. +..+..+++|++|++++|.+..
T Consensus 77 ~L~~l~~~l~~~~N~l~~l~----~~~f~~l~~L~~L~l~~n~l~~ 118 (350)
T 4ay9_X 77 NLPKLHEIRIEKANNLLYIN----PEAFQNLPNLQYLLISNTGIKH 118 (350)
T ss_dssp SCTTCCEEEEEEETTCCEEC----TTSBCCCTTCCEEEEEEECCSS
T ss_pred cchhhhhhhcccCCcccccC----chhhhhcccccccccccccccc
Confidence 3344443 444455554211 2233445566666666655543
No 136
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.07 E-value=1.3e-12 Score=131.45 Aligned_cols=15 Identities=33% Similarity=0.364 Sum_probs=7.7
Q ss_pred CCCccEEEccCCCCC
Q 007577 217 NIALKTLNLSGNPIG 231 (597)
Q Consensus 217 ~~~L~~L~Ls~n~l~ 231 (597)
+++|+.|||++|++.
T Consensus 48 l~~L~~LdLs~n~i~ 62 (329)
T 3sb4_A 48 FPSLKVLDISNAEIK 62 (329)
T ss_dssp CTTCCEEEEEEEEEC
T ss_pred hccCeEEecCcceeE
Confidence 344555555555443
No 137
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.02 E-value=3.6e-13 Score=136.81 Aligned_cols=239 Identities=13% Similarity=0.034 Sum_probs=151.5
Q ss_pred CEEEecCCCCChHHHHHHHHHHHcCCCccEEEeccCCCChhhHHHHHHHHhhCCCccEEEcCCCCCCh-HHHHHHHHHhh
Q 007577 249 ERLQLSSVDLRDEGAKAIAELLKNNSILRVLELNNNMIDYSGFTSLAEALLENSTIRSLHLNGNYGGA-LGANALAKGLE 327 (597)
Q Consensus 249 ~~L~Ls~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~-~~~~~l~~~l~ 327 (597)
+.++.++++++.. +..+ .+++++|+|++|+|+.-. ..+|.++++|++|+|++|.+.. .+. .++.
T Consensus 12 ~~v~C~~~~Lt~i-----P~~l--~~~l~~L~Ls~N~i~~i~----~~~f~~l~~L~~L~Ls~N~i~~~i~~----~~f~ 76 (350)
T 4ay9_X 12 RVFLCQESKVTEI-----PSDL--PRNAIELRFVLTKLRVIQ----KGAFSGFGDLEKIEISQNDVLEVIEA----DVFS 76 (350)
T ss_dssp TEEEEESTTCCSC-----CTTC--CTTCSEEEEESCCCSEEC----TTSSTTCTTCCEEEEECCTTCCEECT----TSBC
T ss_pred CEEEecCCCCCcc-----CcCc--CCCCCEEEccCCcCCCcC----HHHHcCCCCCCEEECcCCCCCCccCh----hHhh
Confidence 6788888888863 3222 257999999999986321 2346678999999999998643 222 2356
Q ss_pred cCCCCCE-EEccCCCCChHHHHHHHHhhhcCccccceeeccCCCCChhHHHHHHHHHHcCCCCcEEEccCC-CCCcHHHH
Q 007577 328 GNKSLRE-LHLHGNSIGDEGIRALMSGLSSRKGKLAVLDIGNNSISAKGAFHVAEYIKNCKSLLWINLYMN-DIGDEGAE 405 (597)
Q Consensus 328 ~~~~L~~-L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n-~l~~~~~~ 405 (597)
+++++.+ +.+++|++... .......+++|+.|++++|.+... ....+....++..|++.++ .+.....
T Consensus 77 ~L~~l~~~l~~~~N~l~~l-----~~~~f~~l~~L~~L~l~~n~l~~~----~~~~~~~~~~l~~l~l~~~~~i~~l~~- 146 (350)
T 4ay9_X 77 NLPKLHEIRIEKANNLLYI-----NPEAFQNLPNLQYLLISNTGIKHL----PDVHKIHSLQKVLLDIQDNINIHTIER- 146 (350)
T ss_dssp SCTTCCEEEEEEETTCCEE-----CTTSBCCCTTCCEEEEEEECCSSC----CCCTTCCBSSCEEEEEESCTTCCEECT-
T ss_pred cchhhhhhhcccCCccccc-----CchhhhhccccccccccccccccC----Cchhhcccchhhhhhhccccccccccc-
Confidence 7778775 55666777653 222235667899999999988762 1122334556778888654 6654211
Q ss_pred HHHHHHhcC-CCccEEEccCCCCChHHHHHHHHHhhcCCCcCEEECcC-CCCCHHHHHHHHHHHhhCCCcCEEecCCCCC
Q 007577 406 KIADALKQN-RTITTIDLGGNNIHSKGASAIARVLKDNSVITSLDLAY-NPIGADGAKALSEVLKFHGNINTLKLGWCQI 483 (597)
Q Consensus 406 ~l~~~l~~~-~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~-n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~i 483 (597)
..+..+ ..++.|++++|+|+... .......+|++|++++ |.++.... ..+..+++|++|++++|+|
T Consensus 147 ---~~f~~~~~~l~~L~L~~N~i~~i~-----~~~f~~~~L~~l~l~~~n~l~~i~~----~~f~~l~~L~~LdLs~N~l 214 (350)
T 4ay9_X 147 ---NSFVGLSFESVILWLNKNGIQEIH-----NSAFNGTQLDELNLSDNNNLEELPN----DVFHGASGPVILDISRTRI 214 (350)
T ss_dssp ---TSSTTSBSSCEEEECCSSCCCEEC-----TTSSTTEEEEEEECTTCTTCCCCCT----TTTTTEECCSEEECTTSCC
T ss_pred ---cchhhcchhhhhhccccccccCCC-----hhhccccchhHHhhccCCcccCCCH----HHhccCcccchhhcCCCCc
Confidence 122222 46889999999988632 2223346799999975 55554221 2345568999999999998
Q ss_pred ChhHHHHHHHHHhcCCCccEEEccCC-CCChHHHHHHHHHHhhcCccccEEEccCC
Q 007577 484 GASGAEFVADMLRYNNTISILDLRAN-GLRDEGAKCLAQSFKVVNEALTSIDLAFN 538 (597)
Q Consensus 484 ~~~~~~~l~~~l~~~~~L~~L~l~~n-~i~~~~~~~l~~~l~~~n~~L~~L~Ls~n 538 (597)
+...... ..+|+.|.+.++ .+.... .+... ++|+.++++++
T Consensus 215 ~~lp~~~-------~~~L~~L~~l~~~~l~~lP--~l~~l-----~~L~~l~l~~~ 256 (350)
T 4ay9_X 215 HSLPSYG-------LENLKKLRARSTYNLKKLP--TLEKL-----VALMEASLTYP 256 (350)
T ss_dssp CCCCSSS-------CTTCCEEECTTCTTCCCCC--CTTTC-----CSCCEEECSCH
T ss_pred CccChhh-------hccchHhhhccCCCcCcCC--CchhC-----cChhhCcCCCC
Confidence 7653321 356777776665 333321 11111 67899998764
No 138
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=98.96 E-value=1.3e-11 Score=124.06 Aligned_cols=124 Identities=14% Similarity=0.184 Sum_probs=73.4
Q ss_pred cCCCcEEEcCCCCCCHHHHHHHHHHhccCCCccEEEeccCCCC--HHHHHHHHHHhhhCCCccEEEccCCCCChhHHHHH
Q 007577 161 LRAFSSVDMSGRNFGDEGLFFLAESLGYNQTAEEVSFAANGIT--AAGIKAFDGVLQSNIALKTLNLSGNPIGDEGVKCL 238 (597)
Q Consensus 161 ~~~L~~L~Ls~~~l~~~~~~~l~~~l~~~~~L~~L~L~~~~l~--~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l 238 (597)
+.++++|.++++ +...++..+... +++|+.|+|++|+|. ... .. ..+.++.+.+..|.+.+
T Consensus 24 ~~~l~~L~l~g~-i~~~~~~~l~~~---l~~L~~LdLs~n~i~~~~~~----~~---~~~~~~~~~~~~~~I~~------ 86 (329)
T 3sb4_A 24 ANSITHLTLTGK-LNAEDFRHLRDE---FPSLKVLDISNAEIKMYSGK----AG---TYPNGKFYIYMANFVPA------ 86 (329)
T ss_dssp HHHCSEEEEEEE-ECHHHHHHHHHS---CTTCCEEEEEEEEECCEEES----SS---SSGGGCCEEECTTEECT------
T ss_pred hCceeEEEEecc-ccHHHHHHHHHh---hccCeEEecCcceeEEecCc----cc---cccccccccccccccCH------
Confidence 457889999875 455555544432 689999999999876 111 00 11124556666665554
Q ss_pred HHHHhc--------CCCcCEEEecCCCCChHHHHHHHHHHHcCCCccEEEeccCCCChhhHHHHHHHHhhCCCccEEEcC
Q 007577 239 CDILVD--------NAGVERLQLSSVDLRDEGAKAIAELLKNNSILRVLELNNNMIDYSGFTSLAEALLENSTIRSLHLN 310 (597)
Q Consensus 239 ~~~l~~--------~~~L~~L~Ls~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~L~ 310 (597)
..+.. |++|++|+|.+ .++..+. ..+..|++|+.+++.+|.+..-+ ..+|..+.++..+.+.
T Consensus 87 -~aF~~~~~~~~~g~~~L~~l~L~~-~i~~I~~----~aF~~~~~L~~l~l~~n~i~~i~----~~aF~~~~~l~~l~~~ 156 (329)
T 3sb4_A 87 -YAFSNVVNGVTKGKQTLEKVILSE-KIKNIED----AAFKGCDNLKICQIRKKTAPNLL----PEALADSVTAIFIPLG 156 (329)
T ss_dssp -TTTEEEETTEEEECTTCCC-CBCT-TCCEECT----TTTTTCTTCCEEEBCCSSCCEEC----TTSSCTTTCEEEECTT
T ss_pred -HHhcccccccccccCCCcEEECCc-cccchhH----HHhhcCcccceEEcCCCCccccc----hhhhcCCCceEEecCc
Confidence 23445 78888888887 6665422 23455678888888887664322 2233345555555554
Q ss_pred C
Q 007577 311 G 311 (597)
Q Consensus 311 ~ 311 (597)
.
T Consensus 157 ~ 157 (329)
T 3sb4_A 157 S 157 (329)
T ss_dssp C
T ss_pred c
Confidence 4
No 139
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.91 E-value=5.8e-10 Score=99.14 Aligned_cols=93 Identities=16% Similarity=0.195 Sum_probs=56.5
Q ss_pred CCccEEEccCCCCChHHHHHHHHHhhcCCCcCEEECcCC-CCCHHHHHHHHHHHhhCCCcCEEecCCCC-CChhHHHHHH
Q 007577 415 RTITTIDLGGNNIHSKGASAIARVLKDNSVITSLDLAYN-PIGADGAKALSEVLKFHGNINTLKLGWCQ-IGASGAEFVA 492 (597)
Q Consensus 415 ~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n-~i~~~~~~~l~~~l~~~~~L~~L~L~~n~-i~~~~~~~l~ 492 (597)
..|++||+++|.|++.++..+ ..|++|++|+|++| .|+|.++..+...-..+++|++|+|++|. |++.+...+.
T Consensus 61 ~~L~~LDLs~~~Itd~GL~~L----~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~ 136 (176)
T 3e4g_A 61 YKIQAIDATDSCIMSIGFDHM----EGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALH 136 (176)
T ss_dssp CCEEEEEEESCCCCGGGGGGG----TTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGG
T ss_pred ceEeEEeCcCCCccHHHHHHh----cCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHh
Confidence 357777777777777765543 34677777777777 47777766665421112356666666663 6666655432
Q ss_pred HHHhcCCCccEEEccCC-CCChHH
Q 007577 493 DMLRYNNTISILDLRAN-GLRDEG 515 (597)
Q Consensus 493 ~~l~~~~~L~~L~l~~n-~i~~~~ 515 (597)
.+++|++|++++| .|++.+
T Consensus 137 ----~~~~L~~L~L~~c~~Itd~g 156 (176)
T 3e4g_A 137 ----HFRNLKYLFLSDLPGVKEKE 156 (176)
T ss_dssp ----GCTTCCEEEEESCTTCCCHH
T ss_pred ----cCCCCCEEECCCCCCCCchH
Confidence 3466666666666 466644
No 140
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.89 E-value=6e-10 Score=99.02 Aligned_cols=92 Identities=13% Similarity=0.099 Sum_probs=55.0
Q ss_pred CCcEEEccCCCCCcHHHHHHHHHHhcCCCccEEEccCC-CCChHHHHHHHHHhhcCCCcCEEECcCC-CCCHHHHHHHHH
Q 007577 388 SLLWINLYMNDIGDEGAEKIADALKQNRTITTIDLGGN-NIHSKGASAIARVLKDNSVITSLDLAYN-PIGADGAKALSE 465 (597)
Q Consensus 388 ~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n-~l~~~~~~~l~~~l~~~~~L~~L~Ls~n-~i~~~~~~~l~~ 465 (597)
+|++||+++|.|++.|+..+ ..+++|++|+|++| .|++.++..++..-..+++|++|+|++| .|++.|+..+.
T Consensus 62 ~L~~LDLs~~~Itd~GL~~L----~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~- 136 (176)
T 3e4g_A 62 KIQAIDATDSCIMSIGFDHM----EGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALH- 136 (176)
T ss_dssp CEEEEEEESCCCCGGGGGGG----TTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGG-
T ss_pred eEeEEeCcCCCccHHHHHHh----cCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHh-
Confidence 56677777666666665443 34666777777766 4666666666542001245677777666 36666665543
Q ss_pred HHhhCCCcCEEecCCCC-CChhH
Q 007577 466 VLKFHGNINTLKLGWCQ-IGASG 487 (597)
Q Consensus 466 ~l~~~~~L~~L~L~~n~-i~~~~ 487 (597)
.+++|++|++++|. +++.+
T Consensus 137 ---~~~~L~~L~L~~c~~Itd~g 156 (176)
T 3e4g_A 137 ---HFRNLKYLFLSDLPGVKEKE 156 (176)
T ss_dssp ---GCTTCCEEEEESCTTCCCHH
T ss_pred ---cCCCCCEEECCCCCCCCchH
Confidence 35667777776664 65543
No 141
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=98.87 E-value=4.7e-11 Score=109.88 Aligned_cols=61 Identities=18% Similarity=0.290 Sum_probs=27.0
Q ss_pred ccceeeccCCCCChhHHHHHHH--HHHcCCCCcEEEccCCCCCcHHHHHHHHHHhcCCCccEEEccCCCCCh
Q 007577 360 KLAVLDIGNNSISAKGAFHVAE--YIKNCKSLLWINLYMNDIGDEGAEKIADALKQNRTITTIDLGGNNIHS 429 (597)
Q Consensus 360 ~L~~L~Ls~n~l~~~~~~~l~~--~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~ 429 (597)
+++.|++++|.++. ++. .+..+++|++|+|++|.++.. .+..+..+++|++|+|++|+|+.
T Consensus 30 ~l~~L~l~~n~i~~-----~~~~~~~~~l~~L~~L~Ls~N~l~~~----~~~~~~~l~~L~~L~Ls~N~l~~ 92 (192)
T 1w8a_A 30 HTTELLLNDNELGR-----ISSDGLFGRLPHLVKLELKRNQLTGI----EPNAFEGASHIQELQLGENKIKE 92 (192)
T ss_dssp TCSEEECCSCCCCS-----BCCSCSGGGCTTCCEEECCSSCCCCB----CTTTTTTCTTCCEEECCSCCCCE
T ss_pred CCCEEECCCCcCCc-----cCCccccccCCCCCEEECCCCCCCCc----CHhHcCCcccCCEEECCCCcCCc
Confidence 45555555555544 111 134445555555555544432 12233334444444444444443
No 142
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=98.86 E-value=9.4e-11 Score=107.86 Aligned_cols=109 Identities=23% Similarity=0.273 Sum_probs=51.1
Q ss_pred CCCEEEccCCCCChHHHHHHHHhhhcCccccceeeccCCCCChhHHHHHHHHHHcCCCCcEEEccCCCCCcHHHHHHHHH
Q 007577 331 SLRELHLHGNSIGDEGIRALMSGLSSRKGKLAVLDIGNNSISAKGAFHVAEYIKNCKSLLWINLYMNDIGDEGAEKIADA 410 (597)
Q Consensus 331 ~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~ 410 (597)
++++|++++|.++..... .....+++|+.|+|++|.++.. .+..+..+++|++|+|++|.|+.. ....
T Consensus 30 ~l~~L~l~~n~i~~~~~~----~~~~~l~~L~~L~Ls~N~l~~~----~~~~~~~l~~L~~L~Ls~N~l~~~----~~~~ 97 (192)
T 1w8a_A 30 HTTELLLNDNELGRISSD----GLFGRLPHLVKLELKRNQLTGI----EPNAFEGASHIQELQLGENKIKEI----SNKM 97 (192)
T ss_dssp TCSEEECCSCCCCSBCCS----CSGGGCTTCCEEECCSSCCCCB----CTTTTTTCTTCCEEECCSCCCCEE----CSSS
T ss_pred CCCEEECCCCcCCccCCc----cccccCCCCCEEECCCCCCCCc----CHhHcCCcccCCEEECCCCcCCcc----CHHH
Confidence 556666666655432110 0112334566666666655541 233445555666666666655542 1122
Q ss_pred HhcCCCccEEEccCCCCChHHHHHHHHHhhcCCCcCEEECcCCCC
Q 007577 411 LKQNRTITTIDLGGNNIHSKGASAIARVLKDNSVITSLDLAYNPI 455 (597)
Q Consensus 411 l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i 455 (597)
+..+++|++|+|++|+|+... ...+..+++|++|+|++|++
T Consensus 98 ~~~l~~L~~L~L~~N~l~~~~----~~~~~~l~~L~~L~L~~N~l 138 (192)
T 1w8a_A 98 FLGLHQLKTLNLYDNQISCVM----PGSFEHLNSLTSLNLASNPF 138 (192)
T ss_dssp STTCTTCCEEECCSSCCCEEC----TTSSTTCTTCCEEECTTCCB
T ss_pred hcCCCCCCEEECCCCcCCeeC----HHHhhcCCCCCEEEeCCCCc
Confidence 334455555555555554421 11223334555555555544
No 143
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=98.86 E-value=5.3e-11 Score=109.58 Aligned_cols=61 Identities=21% Similarity=0.257 Sum_probs=26.7
Q ss_pred ccceeeccCCCCChhHHHHHHHHHHcCCCCcEEEccCCCCCcHHHHHHHHHHhcCCCccEEEccCCCCCh
Q 007577 360 KLAVLDIGNNSISAKGAFHVAEYIKNCKSLLWINLYMNDIGDEGAEKIADALKQNRTITTIDLGGNNIHS 429 (597)
Q Consensus 360 ~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~ 429 (597)
+|+.|++++|.++. ++..+..+++|++|+|++|.|+.. ....+..+++|++|+|++|.|+.
T Consensus 32 ~l~~L~L~~n~i~~-----ip~~~~~l~~L~~L~Ls~N~i~~i----~~~~f~~l~~L~~L~Ls~N~l~~ 92 (193)
T 2wfh_A 32 DVTELYLDGNQFTL-----VPKELSNYKHLTLIDLSNNRISTL----SNQSFSNMTQLLTLILSYNRLRC 92 (193)
T ss_dssp TCCEEECCSSCCCS-----CCGGGGGCTTCCEEECCSSCCCCC----CTTTTTTCTTCCEEECCSSCCCB
T ss_pred CCCEEECCCCcCch-----hHHHhhcccCCCEEECCCCcCCEe----CHhHccCCCCCCEEECCCCccCE
Confidence 45555555555443 233344445555555555544432 11223334444444444444443
No 144
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=98.84 E-value=1.3e-10 Score=106.87 Aligned_cols=107 Identities=20% Similarity=0.202 Sum_probs=48.4
Q ss_pred CCcEEEccCCCCCcHHHHHHHHHHhcCCCccEEEccCCCCChHHHHHHHHHhhcCCCcCEEECcCCCCCHHHHHHHHHHH
Q 007577 388 SLLWINLYMNDIGDEGAEKIADALKQNRTITTIDLGGNNIHSKGASAIARVLKDNSVITSLDLAYNPIGADGAKALSEVL 467 (597)
Q Consensus 388 ~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l 467 (597)
+|++|++++|.++. ++..+..+++|++|+|++|.|+.... ..+..+++|++|+|++|.|+.... ..+
T Consensus 32 ~l~~L~L~~n~i~~-----ip~~~~~l~~L~~L~Ls~N~i~~i~~----~~f~~l~~L~~L~Ls~N~l~~i~~----~~f 98 (193)
T 2wfh_A 32 DVTELYLDGNQFTL-----VPKELSNYKHLTLIDLSNNRISTLSN----QSFSNMTQLLTLILSYNRLRCIPP----RTF 98 (193)
T ss_dssp TCCEEECCSSCCCS-----CCGGGGGCTTCCEEECCSSCCCCCCT----TTTTTCTTCCEEECCSSCCCBCCT----TTT
T ss_pred CCCEEECCCCcCch-----hHHHhhcccCCCEEECCCCcCCEeCH----hHccCCCCCCEEECCCCccCEeCH----HHh
Confidence 45555555555543 22334445555555555555544211 123334555555555555443211 122
Q ss_pred hhCCCcCEEecCCCCCChhHHHHHHHHHhcCCCccEEEccCCCC
Q 007577 468 KFHGNINTLKLGWCQIGASGAEFVADMLRYNNTISILDLRANGL 511 (597)
Q Consensus 468 ~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~n~i 511 (597)
..+++|++|+|++|.|+..... .+..+++|+.|++++|.+
T Consensus 99 ~~l~~L~~L~L~~N~l~~~~~~----~~~~l~~L~~L~L~~N~~ 138 (193)
T 2wfh_A 99 DGLKSLRLLSLHGNDISVVPEG----AFNDLSALSHLAIGANPL 138 (193)
T ss_dssp TTCTTCCEEECCSSCCCBCCTT----TTTTCTTCCEEECCSSCE
T ss_pred CCCCCCCEEECCCCCCCeeChh----hhhcCccccEEEeCCCCe
Confidence 3345555555555555433221 122335555555555543
No 145
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=98.78 E-value=6.2e-10 Score=100.86 Aligned_cols=14 Identities=21% Similarity=0.214 Sum_probs=6.7
Q ss_pred CCCcCEEECcCCCC
Q 007577 442 NSVITSLDLAYNPI 455 (597)
Q Consensus 442 ~~~L~~L~Ls~n~i 455 (597)
+++|++|++++|++
T Consensus 123 l~~L~~L~l~~N~~ 136 (177)
T 2o6r_A 123 LTSLQKIWLHTNPW 136 (177)
T ss_dssp CTTCCEEECCSSCB
T ss_pred CcccCEEEecCCCe
Confidence 34455555555444
No 146
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=98.74 E-value=1e-09 Score=99.39 Aligned_cols=90 Identities=14% Similarity=0.120 Sum_probs=39.9
Q ss_pred HcCCCCcEEEccCCCCCcHHHHHHHHHHhcCCCccEEEccCCCCChHHHHHHHHHhhcCCCcCEEECcCCCCCHHHHHHH
Q 007577 384 KNCKSLLWINLYMNDIGDEGAEKIADALKQNRTITTIDLGGNNIHSKGASAIARVLKDNSVITSLDLAYNPIGADGAKAL 463 (597)
Q Consensus 384 ~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l 463 (597)
..+++|++|++++|.++.. ....+..+++|++|++++|.|+... ...+..+++|++|++++|.++....
T Consensus 49 ~~l~~L~~L~l~~n~l~~~----~~~~~~~l~~L~~L~l~~N~l~~~~----~~~~~~l~~L~~L~l~~N~l~~~~~--- 117 (177)
T 2o6r_A 49 DKLTQLTKLSLSQNQIQSL----PDGVFDKLTKLTILYLHENKLQSLP----NGVFDKLTQLKELALDTNQLKSVPD--- 117 (177)
T ss_dssp TTCTTCSEEECCSSCCCCC----CTTTTTTCTTCCEEECCSSCCCCCC----TTTTTTCTTCCEEECCSSCCSCCCT---
T ss_pred cCcccccEEECCCCcceEe----ChhHccCCCccCEEECCCCCccccC----HHHhhCCcccCEEECcCCcceEeCH---
Confidence 3444455555554444431 1112233445555555555544321 1112334555555555555542211
Q ss_pred HHHHhhCCCcCEEecCCCCCCh
Q 007577 464 SEVLKFHGNINTLKLGWCQIGA 485 (597)
Q Consensus 464 ~~~l~~~~~L~~L~L~~n~i~~ 485 (597)
..+..+++|++|++++|.+..
T Consensus 118 -~~~~~l~~L~~L~l~~N~~~~ 138 (177)
T 2o6r_A 118 -GIFDRLTSLQKIWLHTNPWDC 138 (177)
T ss_dssp -TTTTTCTTCCEEECCSSCBCC
T ss_pred -HHhcCCcccCEEEecCCCeec
Confidence 112334566666666665543
No 147
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=98.57 E-value=7e-09 Score=93.15 Aligned_cols=17 Identities=24% Similarity=0.356 Sum_probs=8.1
Q ss_pred hcCCCCCEEEccCCCCC
Q 007577 327 EGNKSLRELHLHGNSIG 343 (597)
Q Consensus 327 ~~~~~L~~L~Ls~n~i~ 343 (597)
..+++|++|++++|+++
T Consensus 51 ~~l~~L~~L~Ls~N~l~ 67 (170)
T 3g39_A 51 DRLTQLTRLDLDNNQLT 67 (170)
T ss_dssp TTCTTCSEEECCSSCCC
T ss_pred cCcccCCEEECCCCCcC
Confidence 34444555555555443
No 148
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=98.54 E-value=6.8e-09 Score=93.23 Aligned_cols=85 Identities=19% Similarity=0.188 Sum_probs=41.7
Q ss_pred ccceeeccCCCCChhHHHHHHHHHHcCCCCcEEEccCCCCCcHHHHHHHHHHhcCCCccEEEccCCCCChHHHHHHHHHh
Q 007577 360 KLAVLDIGNNSISAKGAFHVAEYIKNCKSLLWINLYMNDIGDEGAEKIADALKQNRTITTIDLGGNNIHSKGASAIARVL 439 (597)
Q Consensus 360 ~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l 439 (597)
+|+.|+|++|.++.. .+..+..+++|++|+|++|.|+.. ....+..+++|++|+|++|+|+.... ..+
T Consensus 31 ~l~~L~L~~N~i~~~----~~~~~~~l~~L~~L~Ls~N~l~~l----~~~~f~~l~~L~~L~L~~N~l~~~~~----~~~ 98 (170)
T 3g39_A 31 TTQVLYLYDNQITKL----EPGVFDRLTQLTRLDLDNNQLTVL----PAGVFDKLTQLTQLSLNDNQLKSIPR----GAF 98 (170)
T ss_dssp TCSEEECCSSCCCCC----CTTTTTTCTTCSEEECCSSCCCCC----CTTTTTTCTTCCEEECCSSCCCCCCT----TTT
T ss_pred CCcEEEcCCCcCCcc----ChhhhcCcccCCEEECCCCCcCcc----ChhhccCCCCCCEEECCCCccCEeCH----HHh
Confidence 455555555555541 233345555566666666655542 11123345555666666655554211 123
Q ss_pred hcCCCcCEEECcCCCCC
Q 007577 440 KDNSVITSLDLAYNPIG 456 (597)
Q Consensus 440 ~~~~~L~~L~Ls~n~i~ 456 (597)
..+++|++|+|++|++.
T Consensus 99 ~~l~~L~~L~L~~N~~~ 115 (170)
T 3g39_A 99 DNLKSLTHIWLLNNPWD 115 (170)
T ss_dssp TTCTTCCEEECCSSCBC
T ss_pred cCCCCCCEEEeCCCCCC
Confidence 34455555555555543
No 149
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=98.45 E-value=2.9e-08 Score=89.41 Aligned_cols=65 Identities=25% Similarity=0.314 Sum_probs=26.8
Q ss_pred hcCCCCCEEEccCCCCChHHHHHHHHhhhcCccccceeeccCCCCChhHHHHHHHHHHcCCCCcEEEccCCCCC
Q 007577 327 EGNKSLRELHLHGNSIGDEGIRALMSGLSSRKGKLAVLDIGNNSISAKGAFHVAEYIKNCKSLLWINLYMNDIG 400 (597)
Q Consensus 327 ~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~ 400 (597)
.++++|++|+|++|+++.. .......+++|+.|+|++|.++.. .+..+..+++|++|+|++|.+.
T Consensus 54 ~~l~~L~~L~Ls~N~l~~i-----~~~~~~~l~~L~~L~L~~N~l~~l----~~~~~~~l~~L~~L~L~~N~~~ 118 (174)
T 2r9u_A 54 DHLVNLQQLYFNSNKLTAI-----PTGVFDKLTQLTQLDLNDNHLKSI----PRGAFDNLKSLTHIYLYNNPWD 118 (174)
T ss_dssp TTCTTCCEEECCSSCCCCC-----CTTTTTTCTTCCEEECCSSCCCCC----CTTTTTTCTTCSEEECCSSCBC
T ss_pred cCCcCCCEEECCCCCCCcc-----ChhHhCCcchhhEEECCCCcccee----CHHHhccccCCCEEEeCCCCcc
Confidence 3444555555555544431 111112233444444444444431 1112344445555555555443
No 150
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=98.41 E-value=1.8e-08 Score=90.82 Aligned_cols=85 Identities=18% Similarity=0.186 Sum_probs=41.4
Q ss_pred ccceeeccCCCCChhHHHHHHHHHHcCCCCcEEEccCCCCCcHHHHHHHHHHhcCCCccEEEccCCCCChHHHHHHHHHh
Q 007577 360 KLAVLDIGNNSISAKGAFHVAEYIKNCKSLLWINLYMNDIGDEGAEKIADALKQNRTITTIDLGGNNIHSKGASAIARVL 439 (597)
Q Consensus 360 ~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l 439 (597)
+|+.|+|++|.++.. .+..+..+++|++|+|++|.|+.. ....+..+++|++|+|++|+|+.... ..+
T Consensus 34 ~L~~L~Ls~N~l~~~----~~~~~~~l~~L~~L~Ls~N~l~~i----~~~~~~~l~~L~~L~L~~N~l~~l~~----~~~ 101 (174)
T 2r9u_A 34 DKQRLWLNNNQITKL----EPGVFDHLVNLQQLYFNSNKLTAI----PTGVFDKLTQLTQLDLNDNHLKSIPR----GAF 101 (174)
T ss_dssp TCSEEECCSSCCCCC----CTTTTTTCTTCCEEECCSSCCCCC----CTTTTTTCTTCCEEECCSSCCCCCCT----TTT
T ss_pred CCcEEEeCCCCcccc----CHHHhcCCcCCCEEECCCCCCCcc----ChhHhCCcchhhEEECCCCccceeCH----HHh
Confidence 455555655555541 233445555666666666655541 11122345555555555555553211 113
Q ss_pred hcCCCcCEEECcCCCCC
Q 007577 440 KDNSVITSLDLAYNPIG 456 (597)
Q Consensus 440 ~~~~~L~~L~Ls~n~i~ 456 (597)
..+++|++|+|++|++.
T Consensus 102 ~~l~~L~~L~L~~N~~~ 118 (174)
T 2r9u_A 102 DNLKSLTHIYLYNNPWD 118 (174)
T ss_dssp TTCTTCSEEECCSSCBC
T ss_pred ccccCCCEEEeCCCCcc
Confidence 33455555555555543
No 151
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=98.21 E-value=5.9e-09 Score=107.19 Aligned_cols=271 Identities=13% Similarity=0.108 Sum_probs=169.7
Q ss_pred CCCcCEEEecCCCCChHHHHHHHHHHHcCCCccEEEeccCCCChhhHHHHHHHHhhCCCccEEEcCCCCCChHHHHHHHH
Q 007577 245 NAGVERLQLSSVDLRDEGAKAIAELLKNNSILRVLELNNNMIDYSGFTSLAEALLENSTIRSLHLNGNYGGALGANALAK 324 (597)
Q Consensus 245 ~~~L~~L~Ls~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~ 324 (597)
+..++.+.+.+. ++..+..+| .++ +|+.+.+..+ ++.-+ ..+|.. .+|+.+.+.. .+...+. .
T Consensus 112 ~~~l~~i~ip~~-i~~I~~~aF----~~~-~L~~i~l~~~-i~~I~----~~aF~~-~~L~~i~lp~-~l~~I~~----~ 174 (401)
T 4fdw_A 112 LKGYNEIILPNS-VKSIPKDAF----RNS-QIAKVVLNEG-LKSIG----DMAFFN-STVQEIVFPS-TLEQLKE----D 174 (401)
T ss_dssp CSSCSEEECCTT-CCEECTTTT----TTC-CCSEEECCTT-CCEEC----TTTTTT-CCCCEEECCT-TCCEECS----S
T ss_pred cCCccEEEECCc-cCEehHhhc----ccC-CccEEEeCCC-ccEEC----HHhcCC-CCceEEEeCC-CccEehH----H
Confidence 467788887653 443322223 333 6999999876 43222 122333 5799999986 4554444 4
Q ss_pred HhhcCCCCCEEEccCCCCChHHHHHHHHhhhcCccccceeeccCCCCChhHHHHHHHHHHcCCCCcEEEccCCCCCcHHH
Q 007577 325 GLEGNKSLRELHLHGNSIGDEGIRALMSGLSSRKGKLAVLDIGNNSISAKGAFHVAEYIKNCKSLLWINLYMNDIGDEGA 404 (597)
Q Consensus 325 ~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~ 404 (597)
+|.+|++|+.+++.+|+++..+. ..+. +.+|+.+.+..+ +..- -..+|..|++|+.+++..+ ++..+.
T Consensus 175 aF~~c~~L~~l~l~~n~l~~I~~-----~aF~-~~~L~~l~lp~~-l~~I----~~~aF~~~~~L~~l~l~~~-l~~I~~ 242 (401)
T 4fdw_A 175 IFYYCYNLKKADLSKTKITKLPA-----STFV-YAGIEEVLLPVT-LKEI----GSQAFLKTSQLKTIEIPEN-VSTIGQ 242 (401)
T ss_dssp TTTTCTTCCEEECTTSCCSEECT-----TTTT-TCCCSEEECCTT-CCEE----CTTTTTTCTTCCCEECCTT-CCEECT
T ss_pred HhhCcccCCeeecCCCcceEech-----hhEe-ecccCEEEeCCc-hhee----hhhHhhCCCCCCEEecCCC-ccCccc
Confidence 57789999999999988776322 2223 358999999865 4441 1245778999999999876 333211
Q ss_pred HHHHHHHhcCCCccEEEccCCCCChHHHHHHHHHhhcCCCcCEEECcCCCCCHHHHHH-HHHHHhhCCCcCEEecCCCCC
Q 007577 405 EKIADALKQNRTITTIDLGGNNIHSKGASAIARVLKDNSVITSLDLAYNPIGADGAKA-LSEVLKFHGNINTLKLGWCQI 483 (597)
Q Consensus 405 ~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~-l~~~l~~~~~L~~L~L~~n~i 483 (597)
.++.. .+|+.+.+.+ .++..+. ..+..|++|+.+++.+|.+....... -...+..|++|+.+.+.+ .+
T Consensus 243 ----~aF~~-~~L~~i~lp~-~i~~I~~----~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~-~i 311 (401)
T 4fdw_A 243 ----EAFRE-SGITTVKLPN-GVTNIAS----RAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPE-SI 311 (401)
T ss_dssp ----TTTTT-CCCSEEEEET-TCCEECT----TTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCT-TC
T ss_pred ----ccccc-CCccEEEeCC-CccEECh----hHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCC-ce
Confidence 22333 7899999954 4544322 34677899999999888654111000 123556789999999984 46
Q ss_pred ChhHHHHHHHHHhcCCCccEEEccCCCCChHHHHHHHHHHhhcCccccEEEccCCCCChHHHHHHHHHHHhCCCCceeEE
Q 007577 484 GASGAEFVADMLRYNNTISILDLRANGLRDEGAKCLAQSFKVVNEALTSIDLAFNEIRDDGAFAIAQALKANEDVAVTSL 563 (597)
Q Consensus 484 ~~~~~~~l~~~l~~~~~L~~L~l~~n~i~~~~~~~l~~~l~~~n~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~~L~~L 563 (597)
+..+.. ++..|++|+.++|.++ ++..+..+|.. .+|+++++++|.+.......+. ..+ ..++.|
T Consensus 312 ~~I~~~----aF~~c~~L~~l~lp~~-l~~I~~~aF~~------~~L~~l~l~~n~~~~l~~~~F~----~~~-~~l~~l 375 (401)
T 4fdw_A 312 RILGQG----LLGGNRKVTQLTIPAN-VTQINFSAFNN------TGIKEVKVEGTTPPQVFEKVWY----GFP-DDITVI 375 (401)
T ss_dssp CEECTT----TTTTCCSCCEEEECTT-CCEECTTSSSS------SCCCEEEECCSSCCBCCCSSCC----CSC-TTCCEE
T ss_pred EEEhhh----hhcCCCCccEEEECcc-ccEEcHHhCCC------CCCCEEEEcCCCCccccccccc----CCC-CCccEE
Confidence 554433 4567799999999665 44443333322 3699999999977643322221 111 147888
Q ss_pred EcccCccc
Q 007577 564 NLANNFLT 571 (597)
Q Consensus 564 ~L~~N~i~ 571 (597)
++..+.+.
T Consensus 376 ~vp~~~~~ 383 (401)
T 4fdw_A 376 RVPAESVE 383 (401)
T ss_dssp EECGGGHH
T ss_pred EeCHHHHH
Confidence 88876543
No 152
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=98.18 E-value=9.7e-09 Score=105.56 Aligned_cols=268 Identities=12% Similarity=0.172 Sum_probs=144.1
Q ss_pred cCCCcEEEcCCCCCCHHHHHHHHHHhccCCCccEEEeccCCCCHHHHHHHHHHhhhCCCccEEEccCCCCChhHHHHHHH
Q 007577 161 LRAFSSVDMSGRNFGDEGLFFLAESLGYNQTAEEVSFAANGITAAGIKAFDGVLQSNIALKTLNLSGNPIGDEGVKCLCD 240 (597)
Q Consensus 161 ~~~L~~L~Ls~~~l~~~~~~~l~~~l~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~ 240 (597)
+..++++.+... +...+ ..+|..+ +|+.+.+..+ ++..+..+| .. .+|+++++.. .+...+. .
T Consensus 112 ~~~l~~i~ip~~-i~~I~----~~aF~~~-~L~~i~l~~~-i~~I~~~aF----~~-~~L~~i~lp~-~l~~I~~----~ 174 (401)
T 4fdw_A 112 LKGYNEIILPNS-VKSIP----KDAFRNS-QIAKVVLNEG-LKSIGDMAF----FN-STVQEIVFPS-TLEQLKE----D 174 (401)
T ss_dssp CSSCSEEECCTT-CCEEC----TTTTTTC-CCSEEECCTT-CCEECTTTT----TT-CCCCEEECCT-TCCEECS----S
T ss_pred cCCccEEEECCc-cCEeh----HhhcccC-CccEEEeCCC-ccEECHHhc----CC-CCceEEEeCC-CccEehH----H
Confidence 355666666542 21111 1233433 6777777655 443333333 23 3577777765 3333221 2
Q ss_pred HHhcCCCcCEEEecCCCCChHHHHHHHHHHHcCCCccEEEeccCCCChhhHHHHHHHHhhCCCccEEEcCCCCCChHHHH
Q 007577 241 ILVDNAGVERLQLSSVDLRDEGAKAIAELLKNNSILRVLELNNNMIDYSGFTSLAEALLENSTIRSLHLNGNYGGALGAN 320 (597)
Q Consensus 241 ~l~~~~~L~~L~Ls~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~ 320 (597)
.+..|.+|+.+++.+|.++..+..++. +.+|+.+.+..+ ++.-+ ..+|..|++|+.+.+..+ +...+.
T Consensus 175 aF~~c~~L~~l~l~~n~l~~I~~~aF~-----~~~L~~l~lp~~-l~~I~----~~aF~~~~~L~~l~l~~~-l~~I~~- 242 (401)
T 4fdw_A 175 IFYYCYNLKKADLSKTKITKLPASTFV-----YAGIEEVLLPVT-LKEIG----SQAFLKTSQLKTIEIPEN-VSTIGQ- 242 (401)
T ss_dssp TTTTCTTCCEEECTTSCCSEECTTTTT-----TCCCSEEECCTT-CCEEC----TTTTTTCTTCCCEECCTT-CCEECT-
T ss_pred HhhCcccCCeeecCCCcceEechhhEe-----ecccCEEEeCCc-hheeh----hhHhhCCCCCCEEecCCC-ccCccc-
Confidence 234467788888877776654333332 467777777644 32211 224456777888887764 343333
Q ss_pred HHHHHhhcCCCCCEEEccCCCCChHHHHHHHHhhhcCccccceeeccCCCCChhHHH-HHHHHHHcCCCCcEEEccCCCC
Q 007577 321 ALAKGLEGNKSLRELHLHGNSIGDEGIRALMSGLSSRKGKLAVLDIGNNSISAKGAF-HVAEYIKNCKSLLWINLYMNDI 399 (597)
Q Consensus 321 ~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~-~l~~~l~~~~~L~~L~Ls~n~l 399 (597)
.+|.+ .+|+.+.+.. .+.. +....+..+.+|+.+++.++.+...... .-...|..|++|+.++|..+ +
T Consensus 243 ---~aF~~-~~L~~i~lp~-~i~~-----I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~~-i 311 (401)
T 4fdw_A 243 ---EAFRE-SGITTVKLPN-GVTN-----IASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPES-I 311 (401)
T ss_dssp ---TTTTT-CCCSEEEEET-TCCE-----ECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCTT-C
T ss_pred ---ccccc-CCccEEEeCC-CccE-----EChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCCc-e
Confidence 22444 5778887743 3333 2223335566788888877654410000 01235677888888888744 4
Q ss_pred CcHHHHHHHHHHhcCCCccEEEccCCCCChHHHHHHHHHhhcCCCcCEEECcCCCCCHHHHHHHHHHHhhC-CCcCEEec
Q 007577 400 GDEGAEKIADALKQNRTITTIDLGGNNIHSKGASAIARVLKDNSVITSLDLAYNPIGADGAKALSEVLKFH-GNINTLKL 478 (597)
Q Consensus 400 ~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~-~~L~~L~L 478 (597)
+..+ ..++..+++|+.+.|..+ ++..+. .++..| +|+.+++.+|.+..... ..+..+ .+++.|.+
T Consensus 312 ~~I~----~~aF~~c~~L~~l~lp~~-l~~I~~----~aF~~~-~L~~l~l~~n~~~~l~~----~~F~~~~~~l~~l~v 377 (401)
T 4fdw_A 312 RILG----QGLLGGNRKVTQLTIPAN-VTQINF----SAFNNT-GIKEVKVEGTTPPQVFE----KVWYGFPDDITVIRV 377 (401)
T ss_dssp CEEC----TTTTTTCCSCCEEEECTT-CCEECT----TSSSSS-CCCEEEECCSSCCBCCC----SSCCCSCTTCCEEEE
T ss_pred EEEh----hhhhcCCCCccEEEECcc-ccEEcH----HhCCCC-CCCEEEEcCCCCccccc----ccccCCCCCccEEEe
Confidence 4321 134566788888888654 444321 235667 89999998886543211 111222 35667766
Q ss_pred CCCC
Q 007577 479 GWCQ 482 (597)
Q Consensus 479 ~~n~ 482 (597)
-.+.
T Consensus 378 p~~~ 381 (401)
T 4fdw_A 378 PAES 381 (401)
T ss_dssp CGGG
T ss_pred CHHH
Confidence 6554
No 153
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.18 E-value=3.9e-06 Score=80.22 Aligned_cols=41 Identities=20% Similarity=0.321 Sum_probs=17.8
Q ss_pred cccceeeccCCCCChhHHHHHHHHHHcCCCCcEEEccCCCCCc
Q 007577 359 GKLAVLDIGNNSISAKGAFHVAEYIKNCKSLLWINLYMNDIGD 401 (597)
Q Consensus 359 ~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~ 401 (597)
++|+.|+|++|.++... .++..+..+++|+.|+|++|.|++
T Consensus 170 ~~L~~L~Ls~N~l~~l~--~l~~~~~~l~~L~~L~Ls~N~i~~ 210 (267)
T 3rw6_A 170 PELLSLNLSNNRLYRLD--DMSSIVQKAPNLKILNLSGNELKS 210 (267)
T ss_dssp TTCCEEECTTSCCCCCG--GGTTHHHHSTTCCEEECTTSCCCS
T ss_pred CCCCEEECCCCCCCCCc--cchhHHhhCCCCCEEECCCCccCC
Confidence 34444444444444310 022233445555555555555544
No 154
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.01 E-value=5.7e-07 Score=90.68 Aligned_cols=103 Identities=17% Similarity=0.195 Sum_probs=52.8
Q ss_pred EEEccCC-CCChHHHHHHHHhhhcCccccceeeccC-CCCChhHHHHHHHHHHcCCCCcEEEccCCCCCcHHHHHHHHHH
Q 007577 334 ELHLHGN-SIGDEGIRALMSGLSSRKGKLAVLDIGN-NSISAKGAFHVAEYIKNCKSLLWINLYMNDIGDEGAEKIADAL 411 (597)
Q Consensus 334 ~L~Ls~n-~i~~~~~~~l~~~l~~~~~~L~~L~Ls~-n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l 411 (597)
.++.+++ +++. ++. + ....+|+.|+|++ |.++.. .+..|..+++|++|+|++|.|+.. .+..+
T Consensus 12 ~v~~~~~n~l~~-----ip~-l-~~~~~L~~L~l~~~n~l~~~----~~~~~~~l~~L~~L~l~~N~l~~~----~~~~~ 76 (347)
T 2ifg_A 12 GLRCTRDGALDS-----LHH-L-PGAENLTELYIENQQHLQHL----ELRDLRGLGELRNLTIVKSGLRFV----APDAF 76 (347)
T ss_dssp CEECCSSCCCTT-----TTT-S-CSCSCCSEEECCSCSSCCEE----CGGGSCSCCCCSEEECCSSCCCEE----CTTGG
T ss_pred EEEcCCCCCCCc-----cCC-C-CCCCCeeEEEccCCCCCCCc----ChhHhccccCCCEEECCCCcccee----CHHHh
Confidence 4556555 5554 222 1 2334566666664 666551 223455666666666666666553 22334
Q ss_pred hcCCCccEEEccCCCCChHHHHHHHHHhhcCCCcCEEECcCCCCC
Q 007577 412 KQNRTITTIDLGGNNIHSKGASAIARVLKDNSVITSLDLAYNPIG 456 (597)
Q Consensus 412 ~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~ 456 (597)
..+++|++|+|++|+|+.... ..+.. ..|+.|+|.+|.+.
T Consensus 77 ~~l~~L~~L~l~~N~l~~~~~----~~~~~-~~L~~l~l~~N~~~ 116 (347)
T 2ifg_A 77 HFTPRLSRLNLSFNALESLSW----KTVQG-LSLQELVLSGNPLH 116 (347)
T ss_dssp GSCSCCCEEECCSSCCSCCCS----TTTCS-CCCCEEECCSSCCC
T ss_pred cCCcCCCEEeCCCCccceeCH----HHccc-CCceEEEeeCCCcc
Confidence 556666666666666654211 11111 22666666666554
No 155
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=97.98 E-value=1.5e-06 Score=87.67 Aligned_cols=80 Identities=16% Similarity=0.130 Sum_probs=39.9
Q ss_pred EEEecCC-CCChHHHHHHHHHHHcCCCccEEEecc-CCCChhhHHHHHHHHhhCCCccEEEcCCCCCChHHHHHHHHHhh
Q 007577 250 RLQLSSV-DLRDEGAKAIAELLKNNSILRVLELNN-NMIDYSGFTSLAEALLENSTIRSLHLNGNYGGALGANALAKGLE 327 (597)
Q Consensus 250 ~L~Ls~~-~l~~~~~~~l~~~l~~~~~L~~L~Ls~-n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~ 327 (597)
.++++++ +++. ++. +..+++|++|+|++ |.|+... ...|..+++|+.|+|++|.++.... ..|.
T Consensus 12 ~v~~~~~n~l~~-----ip~-l~~~~~L~~L~l~~~n~l~~~~----~~~~~~l~~L~~L~l~~N~l~~~~~----~~~~ 77 (347)
T 2ifg_A 12 GLRCTRDGALDS-----LHH-LPGAENLTELYIENQQHLQHLE----LRDLRGLGELRNLTIVKSGLRFVAP----DAFH 77 (347)
T ss_dssp CEECCSSCCCTT-----TTT-SCSCSCCSEEECCSCSSCCEEC----GGGSCSCCCCSEEECCSSCCCEECT----TGGG
T ss_pred EEEcCCCCCCCc-----cCC-CCCCCCeeEEEccCCCCCCCcC----hhHhccccCCCEEECCCCccceeCH----HHhc
Confidence 3455555 5554 333 44445566666664 5554211 1233445555555555555554332 2344
Q ss_pred cCCCCCEEEccCCCCC
Q 007577 328 GNKSLRELHLHGNSIG 343 (597)
Q Consensus 328 ~~~~L~~L~Ls~n~i~ 343 (597)
++++|++|+|++|.++
T Consensus 78 ~l~~L~~L~l~~N~l~ 93 (347)
T 2ifg_A 78 FTPRLSRLNLSFNALE 93 (347)
T ss_dssp SCSCCCEEECCSSCCS
T ss_pred CCcCCCEEeCCCCccc
Confidence 5555555555555554
No 156
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=97.88 E-value=2e-08 Score=103.47 Aligned_cols=14 Identities=7% Similarity=0.074 Sum_probs=7.2
Q ss_pred hccCCCccEEEecc
Q 007577 186 LGYNQTAEEVSFAA 199 (597)
Q Consensus 186 l~~~~~L~~L~L~~ 199 (597)
|..|.+|+.+++.+
T Consensus 90 F~~c~~L~~i~lp~ 103 (394)
T 4fs7_A 90 FENCSKLEIINIPD 103 (394)
T ss_dssp TTTCTTCCEECCCT
T ss_pred hhCCCCCcEEEeCC
Confidence 44455555555543
No 157
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=97.82 E-value=2.3e-08 Score=102.95 Aligned_cols=308 Identities=13% Similarity=0.172 Sum_probs=144.0
Q ss_pred HhccCCCccEEEeccCCCCHHHHHHHHHHhhhCCCccEEEccCCCCChhHHHHHHHHHhcCCCcCEEEecCCCCChHHHH
Q 007577 185 SLGYNQTAEEVSFAANGITAAGIKAFDGVLQSNIALKTLNLSGNPIGDEGVKCLCDILVDNAGVERLQLSSVDLRDEGAK 264 (597)
Q Consensus 185 ~l~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~~~l~~~~~~ 264 (597)
+|..|.+|+++.+..+ ++..+- .++..|++|+.+++..+ ++..+. ..+..|.+|+.+.+..+ +...+..
T Consensus 66 AF~~c~~L~~i~lp~~-i~~I~~----~aF~~c~~L~~i~lp~~-l~~I~~----~aF~~c~~L~~i~~p~~-l~~i~~~ 134 (394)
T 4fs7_A 66 AFQGCRKVTEIKIPST-VREIGE----FAFENCSKLEIINIPDS-VKMIGR----CTFSGCYALKSILLPLM-LKSIGVE 134 (394)
T ss_dssp TTTTCTTEEEEECCTT-CCEECT----TTTTTCTTCCEECCCTT-CCEECT----TTTTTCTTCCCCCCCTT-CCEECTT
T ss_pred HhhCCCCceEEEeCCC-ccCcch----hHhhCCCCCcEEEeCCC-ceEccc----hhhcccccchhhcccCc-eeeecce
Confidence 5667888999998754 443322 34567889999999754 333222 22344677887766543 2222111
Q ss_pred HHHHHHHcCCCccEEEeccCC-CChhhHHHHHHHHhhCCCccEEEcCCCCCChHHHHHHHHHhhcCCCCCEEEccCCCCC
Q 007577 265 AIAELLKNNSILRVLELNNNM-IDYSGFTSLAEALLENSTIRSLHLNGNYGGALGANALAKGLEGNKSLRELHLHGNSIG 343 (597)
Q Consensus 265 ~l~~~l~~~~~L~~L~Ls~n~-i~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~ 343 (597)
+ +..+..++........ +. ..++..|.+|+.+.+..+. ...+. .++.+|.+|+.+.+..+ +.
T Consensus 135 a----F~~~~~~~~~~~~~~~~i~-------~~aF~~c~~L~~i~l~~~~-~~I~~----~~F~~c~~L~~i~l~~~-~~ 197 (394)
T 4fs7_A 135 A----FKGCDFKEITIPEGVTVIG-------DEAFATCESLEYVSLPDSM-ETLHN----GLFSGCGKLKSIKLPRN-LK 197 (394)
T ss_dssp T----TTTCCCSEEECCTTCCEEC-------TTTTTTCTTCCEEECCTTC-CEECT----TTTTTCTTCCBCCCCTT-CC
T ss_pred e----eecccccccccCccccccc-------hhhhcccCCCcEEecCCcc-ceecc----ccccCCCCceEEEcCCC-ce
Confidence 1 2222222222211111 11 1234566777777776542 22222 23556777777777554 22
Q ss_pred hHHHHHHHHhhhcCccccceeeccCCCCChhHHHHHHHHHHcCCCCcEEEccCC--CCCcHHHHHHHHHHhcCCCccEEE
Q 007577 344 DEGIRALMSGLSSRKGKLAVLDIGNNSISAKGAFHVAEYIKNCKSLLWINLYMN--DIGDEGAEKIADALKQNRTITTID 421 (597)
Q Consensus 344 ~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n--~l~~~~~~~l~~~l~~~~~L~~L~ 421 (597)
. +.......+..|+.+.+..+...- ......+.+|+.+.+... .+.+ .++..+..|+.+.
T Consensus 198 ~-----I~~~~F~~~~~L~~i~~~~~~~~i------~~~~~~~~~l~~i~ip~~~~~i~~-------~~f~~~~~l~~~~ 259 (394)
T 4fs7_A 198 I-----IRDYCFAECILLENMEFPNSLYYL------GDFALSKTGVKNIIIPDSFTELGK-------SVFYGCTDLESIS 259 (394)
T ss_dssp E-----ECTTTTTTCTTCCBCCCCTTCCEE------CTTTTTTCCCCEEEECTTCCEECS-------STTTTCSSCCEEE
T ss_pred E-----eCchhhccccccceeecCCCceEe------ehhhcccCCCceEEECCCceeccc-------ccccccccceeEE
Confidence 1 112222344456666665542211 011223455666666443 1211 1233455666666
Q ss_pred ccCCCCChHHHHHHHHHhhcCCCcCEEECcCCCCCHHHHHHHHHHHhhCCCcCEEecCCCCCChhHHHHHHHHHhcCCCc
Q 007577 422 LGGNNIHSKGASAIARVLKDNSVITSLDLAYNPIGADGAKALSEVLKFHGNINTLKLGWCQIGASGAEFVADMLRYNNTI 501 (597)
Q Consensus 422 L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L 501 (597)
+..+...- + ...+..|..++.+.+..+.+.+ ..+..|.+|+.+.+..+ +...+. .++..|.+|
T Consensus 260 ~~~~~~~i-~----~~~F~~~~~l~~~~~~~~~i~~-------~~F~~~~~L~~i~l~~~-i~~I~~----~aF~~c~~L 322 (394)
T 4fs7_A 260 IQNNKLRI-G----GSLFYNCSGLKKVIYGSVIVPE-------KTFYGCSSLTEVKLLDS-VKFIGE----EAFESCTSL 322 (394)
T ss_dssp ECCTTCEE-C----SCTTTTCTTCCEEEECSSEECT-------TTTTTCTTCCEEEECTT-CCEECT----TTTTTCTTC
T ss_pred cCCCccee-e----ccccccccccceeccCceeecc-------ccccccccccccccccc-cceech----hhhcCCCCC
Confidence 65542210 0 1123445556665555443322 12334556666666443 222221 123445666
Q ss_pred cEEEccCCCCChHHHHHHHHHHhhcCccccEEEccCCCCChHHHHHHHHHHHhCCCCceeEEEcccC
Q 007577 502 SILDLRANGLRDEGAKCLAQSFKVVNEALTSIDLAFNEIRDDGAFAIAQALKANEDVAVTSLNLANN 568 (597)
Q Consensus 502 ~~L~l~~n~i~~~~~~~l~~~l~~~n~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~N 568 (597)
+.++|.++ ++..+..+|..+ .+|+.+++..+ ++..+..++..+ . +|+++++..+
T Consensus 323 ~~i~lp~~-v~~I~~~aF~~c-----~~L~~i~lp~~-l~~I~~~aF~~C----~--~L~~i~lp~~ 376 (394)
T 4fs7_A 323 VSIDLPYL-VEEIGKRSFRGC-----TSLSNINFPLS-LRKIGANAFQGC----I--NLKKVELPKR 376 (394)
T ss_dssp CEECCCTT-CCEECTTTTTTC-----TTCCEECCCTT-CCEECTTTBTTC----T--TCCEEEEEGG
T ss_pred CEEEeCCc-ccEEhHHhccCC-----CCCCEEEECcc-ccEehHHHhhCC----C--CCCEEEECCC
Confidence 66666433 333333333332 45666666554 433333333222 2 2666666543
No 158
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=97.80 E-value=3.6e-05 Score=73.51 Aligned_cols=88 Identities=18% Similarity=0.274 Sum_probs=49.2
Q ss_pred HcCCCCcEEEccCCCCCcHHHHHHHHHHhcCCCccEEEccCCCCChHHHHHHHHHhhcCCCcCEEECcCCCCCHH---HH
Q 007577 384 KNCKSLLWINLYMNDIGDEGAEKIADALKQNRTITTIDLGGNNIHSKGASAIARVLKDNSVITSLDLAYNPIGAD---GA 460 (597)
Q Consensus 384 ~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~---~~ 460 (597)
..+++|+.|+|++|.|++. ..+...+..+++|++|+|++|.|++. ..+.. +..+ +|++|+|++|++... ..
T Consensus 167 ~~l~~L~~L~Ls~N~l~~l--~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~-l~~l-~L~~L~L~~Npl~~~~~~~~ 240 (267)
T 3rw6_A 167 ENIPELLSLNLSNNRLYRL--DDMSSIVQKAPNLKILNLSGNELKSE--RELDK-IKGL-KLEELWLDGNSLCDTFRDQS 240 (267)
T ss_dssp HHCTTCCEEECTTSCCCCC--GGGTTHHHHSTTCCEEECTTSCCCSG--GGGGG-GTTS-CCSEEECTTSTTGGGCSSHH
T ss_pred hhCCCCCEEECCCCCCCCC--ccchhHHhhCCCCCEEECCCCccCCc--hhhhh-cccC-CcceEEccCCcCccccCcch
Confidence 5678888888888887752 11333344567777777777777764 11211 2222 677777777766531 11
Q ss_pred HHHHHHHhhCCCcCEEe
Q 007577 461 KALSEVLKFHGNINTLK 477 (597)
Q Consensus 461 ~~l~~~l~~~~~L~~L~ 477 (597)
......+..+++|+.|+
T Consensus 241 ~y~~~il~~~P~L~~LD 257 (267)
T 3rw6_A 241 TYISAIRERFPKLLRLD 257 (267)
T ss_dssp HHHHHHHHHCTTCCEES
T ss_pred hHHHHHHHHCcccCeEC
Confidence 22223344455555554
No 159
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=97.31 E-value=7.1e-06 Score=84.19 Aligned_cols=312 Identities=10% Similarity=0.158 Sum_probs=154.7
Q ss_pred CCcEEEcCCC--CCCHHHHHHHHHHhccCCCccEEEeccCC---CCHHHHHHHHHHhhhCCCccEEEccCCCCChhHHHH
Q 007577 163 AFSSVDMSGR--NFGDEGLFFLAESLGYNQTAEEVSFAANG---ITAAGIKAFDGVLQSNIALKTLNLSGNPIGDEGVKC 237 (597)
Q Consensus 163 ~L~~L~Ls~~--~l~~~~~~~l~~~l~~~~~L~~L~L~~~~---l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~ 237 (597)
.|+++.+..+ .|++ .+|..|.+|+.+.+..+. ++..+-. ++..|.+|+.+.+..+ +...+.
T Consensus 65 ~L~sI~iP~svt~Ig~-------~AF~~C~~L~~i~~~~n~p~~l~~Ig~~----aF~~c~~L~~i~~~~~-~~~I~~-- 130 (394)
T 4gt6_A 65 VLTSVQIPDTVTEIGS-------NAFYNCTSLKRVTIQDNKPSCVKKIGRQ----AFMFCSELTDIPILDS-VTEIDS-- 130 (394)
T ss_dssp CCCEEEECTTCCEECT-------TTTTTCTTCCEEEEGGGCCCCCCEECTT----TTTTCTTCCBCGGGTT-CSEECT--
T ss_pred cCEEEEECCCeeEEhH-------HHhhCCccCceEeecCCCCCeeeEechh----hchhcccceeeccCCc-cceehh--
Confidence 4777777643 2332 356678888888887652 4433322 3446677777766543 222211
Q ss_pred HHHHHhcCCCcCEEEecCCCCChHHHHHHHHHHHcCCCccEEEeccCCCChhhHHHHHHHHhhCCCccEEEcCCCCCChH
Q 007577 238 LCDILVDNAGVERLQLSSVDLRDEGAKAIAELLKNNSILRVLELNNNMIDYSGFTSLAEALLENSTIRSLHLNGNYGGAL 317 (597)
Q Consensus 238 l~~~l~~~~~L~~L~Ls~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~ 317 (597)
..+..|.+|+.+.+..+. ...+ ...+..+..|+.+.+..+ ++.- ......+..|+.+.+..+. ...
T Consensus 131 --~aF~~c~~L~~i~lp~~~-~~I~----~~~F~~c~~L~~i~~~~~-~~~I-----~~~aF~~~~l~~i~ip~~~-~~i 196 (394)
T 4gt6_A 131 --EAFHHCEELDTVTIPEGV-TSVA----DGMFSYCYSLHTVTLPDS-VTAI-----EERAFTGTALTQIHIPAKV-TRI 196 (394)
T ss_dssp --TTTTTCTTCCEEECCTTC-CEEC----TTTTTTCTTCCEEECCTT-CCEE-----CTTTTTTCCCSEEEECTTC-CEE
T ss_pred --hhhhhhccccccccccee-eeec----ccceecccccccccccce-eeEe-----ccccccccceeEEEECCcc-ccc
Confidence 223346788888886432 2211 123445677888877654 2111 1111134577777776542 222
Q ss_pred HHHHHHHHhhcCCCCCEEEccCCCCChHHHHHHHHh-------h--hcCccccceeeccCCCCChhHHHHHHHHHHcCCC
Q 007577 318 GANALAKGLEGNKSLRELHLHGNSIGDEGIRALMSG-------L--SSRKGKLAVLDIGNNSISAKGAFHVAEYIKNCKS 388 (597)
Q Consensus 318 ~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~-------l--~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~ 388 (597)
+. .++..|..++.............-. +... + ......+..+.+... +... -..++..|.+
T Consensus 197 ~~----~af~~c~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ip~~-v~~i----~~~aF~~c~~ 266 (394)
T 4gt6_A 197 GT----NAFSECFALSTITSDSESYPAIDNV-LYEKSANGDYALIRYPSQREDPAFKIPNG-VARI----ETHAFDSCAY 266 (394)
T ss_dssp CT----TTTTTCTTCCEEEECCSSSCBSSSC-EEEECTTSCEEEEECCTTCCCSEEECCTT-EEEE----CTTTTTTCSS
T ss_pred cc----chhhhccccceecccccccccccce-eecccccccccccccccccccceEEcCCc-ceEc----ccceeeeccc
Confidence 22 3355677777766554432110000 0000 0 000012223333221 1110 0124667888
Q ss_pred CcEEEccCCCCCcHHHHHHHHHHhcCCCccEEEccCCCCChHHHHHHHHHhhcCCCcCEEECcCCCCCHHHHHHHHHHHh
Q 007577 389 LLWINLYMNDIGDEGAEKIADALKQNRTITTIDLGGNNIHSKGASAIARVLKDNSVITSLDLAYNPIGADGAKALSEVLK 468 (597)
Q Consensus 389 L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~ 468 (597)
|+.+.+..+... .+ ..++..++.|+.+.+.. .++..+. ..+..|.+|+.++|..+ ++..+. .++.
T Consensus 267 L~~i~lp~~~~~-I~----~~aF~~c~~L~~i~l~~-~i~~I~~----~aF~~c~~L~~i~lp~~-v~~I~~----~aF~ 331 (394)
T 4gt6_A 267 LASVKMPDSVVS-IG----TGAFMNCPALQDIEFSS-RITELPE----SVFAGCISLKSIDIPEG-ITQILD----DAFA 331 (394)
T ss_dssp CCEEECCTTCCE-EC----TTTTTTCTTCCEEECCT-TCCEECT----TTTTTCTTCCEEECCTT-CCEECT----TTTT
T ss_pred ccEEecccccce-ec----CcccccccccccccCCC-cccccCc----eeecCCCCcCEEEeCCc-ccEehH----hHhh
Confidence 888888765321 10 12455678888888864 3433221 23567788999988765 322111 3456
Q ss_pred hCCCcCEEecCCCCCChhHHHHHHHHHhcCCCccEEEccCCCCChHHHHHHHHHHhhcCccccEEEccCCCC
Q 007577 469 FHGNINTLKLGWCQIGASGAEFVADMLRYNNTISILDLRANGLRDEGAKCLAQSFKVVNEALTSIDLAFNEI 540 (597)
Q Consensus 469 ~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~n~i~~~~~~~l~~~l~~~n~~L~~L~Ls~n~i 540 (597)
.|.+|+.+.+..+ ++..+. .++.+|++|+.+++.++... . ..+. ....|+.+.+..+.+
T Consensus 332 ~C~~L~~i~ip~s-v~~I~~----~aF~~C~~L~~i~~~~~~~~---~----~~~~-~~~~L~~i~i~~~~~ 390 (394)
T 4gt6_A 332 GCEQLERIAIPSS-VTKIPE----SAFSNCTALNNIEYSGSRSQ---W----NAIS-TDSGLQNLPVAPGSI 390 (394)
T ss_dssp TCTTCCEEEECTT-CCBCCG----GGGTTCTTCCEEEESSCHHH---H----HTCB-CCCCC----------
T ss_pred CCCCCCEEEECcc-cCEEhH----hHhhCCCCCCEEEECCceee---h----hhhh-ccCCCCEEEeCCCCE
Confidence 6788999988654 433332 24667889999998876321 1 1111 236688888876654
No 160
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=97.14 E-value=3.1e-05 Score=79.34 Aligned_cols=297 Identities=8% Similarity=0.118 Sum_probs=147.6
Q ss_pred HHHhcCCCcEEEcCCCC---CCHHHHHHHHHHhccCCCccEEEeccCCCCHHHHHHHHHHhhhCCCccEEEccCCCCChh
Q 007577 157 FAKELRAFSSVDMSGRN---FGDEGLFFLAESLGYNQTAEEVSFAANGITAAGIKAFDGVLQSNIALKTLNLSGNPIGDE 233 (597)
Q Consensus 157 ~~~~~~~L~~L~Ls~~~---l~~~~~~~l~~~l~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~ 233 (597)
.+.++.+|+.+.+..+. +...+ ..+|..|.+|+.+.+..+ ++..+ ...+..|.+|+.+.+..+ +...
T Consensus 82 AF~~C~~L~~i~~~~n~p~~l~~Ig----~~aF~~c~~L~~i~~~~~-~~~I~----~~aF~~c~~L~~i~lp~~-~~~I 151 (394)
T 4gt6_A 82 AFYNCTSLKRVTIQDNKPSCVKKIG----RQAFMFCSELTDIPILDS-VTEID----SEAFHHCEELDTVTIPEG-VTSV 151 (394)
T ss_dssp TTTTCTTCCEEEEGGGCCCCCCEEC----TTTTTTCTTCCBCGGGTT-CSEEC----TTTTTTCTTCCEEECCTT-CCEE
T ss_pred HhhCCccCceEeecCCCCCeeeEec----hhhchhcccceeeccCCc-cceeh----hhhhhhhcccccccccce-eeee
Confidence 45578889999887542 32221 134667788888877654 22221 123457788999998653 2221
Q ss_pred HHHHHHHHHhcCCCcCEEEecCCCCChHHHHHHHHHHHcCCCccEEEeccCCCChhhHHHHHHHHhhCCCccEEEcCCCC
Q 007577 234 GVKCLCDILVDNAGVERLQLSSVDLRDEGAKAIAELLKNNSILRVLELNNNMIDYSGFTSLAEALLENSTIRSLHLNGNY 313 (597)
Q Consensus 234 ~~~~l~~~l~~~~~L~~L~Ls~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~ 313 (597)
+. ..+..|..|+.+.+..+ ++..+..++ .+..|+.+.+..+-. ..+ ..++..+..++........
T Consensus 152 ~~----~~F~~c~~L~~i~~~~~-~~~I~~~aF-----~~~~l~~i~ip~~~~-~i~----~~af~~c~~l~~~~~~~~~ 216 (394)
T 4gt6_A 152 AD----GMFSYCYSLHTVTLPDS-VTAIEERAF-----TGTALTQIHIPAKVT-RIG----TNAFSECFALSTITSDSES 216 (394)
T ss_dssp CT----TTTTTCTTCCEEECCTT-CCEECTTTT-----TTCCCSEEEECTTCC-EEC----TTTTTTCTTCCEEEECCSS
T ss_pred cc----cceecccccccccccce-eeEeccccc-----cccceeEEEECCccc-ccc----cchhhhccccceecccccc
Confidence 11 23345788888888754 333222222 235688888765421 111 1234456677766654432
Q ss_pred CChHHHHHHH---------HHhhcCCCCCEEEccCCCCChHHHHHHHHhhhcCccccceeeccCCCCChhHHHHHHHHHH
Q 007577 314 GGALGANALA---------KGLEGNKSLRELHLHGNSIGDEGIRALMSGLSSRKGKLAVLDIGNNSISAKGAFHVAEYIK 384 (597)
Q Consensus 314 i~~~~~~~l~---------~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~ 384 (597)
........+. ........+..+.+... +.. +....+..+..|+.+.+..+...- -..++.
T Consensus 217 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ip~~-v~~-----i~~~aF~~c~~L~~i~lp~~~~~I-----~~~aF~ 285 (394)
T 4gt6_A 217 YPAIDNVLYEKSANGDYALIRYPSQREDPAFKIPNG-VAR-----IETHAFDSCAYLASVKMPDSVVSI-----GTGAFM 285 (394)
T ss_dssp SCBSSSCEEEECTTSCEEEEECCTTCCCSEEECCTT-EEE-----ECTTTTTTCSSCCEEECCTTCCEE-----CTTTTT
T ss_pred cccccceeecccccccccccccccccccceEEcCCc-ceE-----cccceeeecccccEEeccccccee-----cCcccc
Confidence 2111000000 00001122333333211 111 112222445567777776542211 113356
Q ss_pred cCCCCcEEEccCCCCCcHHHHHHHHHHhcCCCccEEEccCCCCChHHHHHHHHHhhcCCCcCEEECcCCCCCHHHHHHHH
Q 007577 385 NCKSLLWINLYMNDIGDEGAEKIADALKQNRTITTIDLGGNNIHSKGASAIARVLKDNSVITSLDLAYNPIGADGAKALS 464 (597)
Q Consensus 385 ~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~ 464 (597)
.|++|+.+.+..+ ++..+ ..++..+.+|+.++|..+ ++..+. .++..|.+|+.+.|..+ ++..+.
T Consensus 286 ~c~~L~~i~l~~~-i~~I~----~~aF~~c~~L~~i~lp~~-v~~I~~----~aF~~C~~L~~i~ip~s-v~~I~~---- 350 (394)
T 4gt6_A 286 NCPALQDIEFSSR-ITELP----ESVFAGCISLKSIDIPEG-ITQILD----DAFAGCEQLERIAIPSS-VTKIPE---- 350 (394)
T ss_dssp TCTTCCEEECCTT-CCEEC----TTTTTTCTTCCEEECCTT-CCEECT----TTTTTCTTCCEEEECTT-CCBCCG----
T ss_pred cccccccccCCCc-ccccC----ceeecCCCCcCEEEeCCc-ccEehH----hHhhCCCCCCEEEECcc-cCEEhH----
Confidence 6778888887643 32211 124556778888888654 333221 23566788888888654 222111
Q ss_pred HHHhhCCCcCEEecCCCCCChhHHHHHHHHHhcCCCccEEEccCCCC
Q 007577 465 EVLKFHGNINTLKLGWCQIGASGAEFVADMLRYNNTISILDLRANGL 511 (597)
Q Consensus 465 ~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~n~i 511 (597)
.++..|.+|+.+++.++.. ....+..|.+|+.+.+..+.+
T Consensus 351 ~aF~~C~~L~~i~~~~~~~-------~~~~~~~~~~L~~i~i~~~~~ 390 (394)
T 4gt6_A 351 SAFSNCTALNNIEYSGSRS-------QWNAISTDSGLQNLPVAPGSI 390 (394)
T ss_dssp GGGTTCTTCCEEEESSCHH-------HHHTCBCCCCC----------
T ss_pred hHhhCCCCCCEEEECCcee-------ehhhhhccCCCCEEEeCCCCE
Confidence 3456778888888877642 123456678888888776643
No 161
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=81.22 E-value=0.048 Score=54.92 Aligned_cols=15 Identities=13% Similarity=0.164 Sum_probs=8.9
Q ss_pred HhccCCCccEEEecc
Q 007577 185 SLGYNQTAEEVSFAA 199 (597)
Q Consensus 185 ~l~~~~~L~~L~L~~ 199 (597)
+|..|.+|++++|..
T Consensus 64 aF~~C~~L~~I~lp~ 78 (379)
T 4h09_A 64 NFNSCYNMTKVTVAS 78 (379)
T ss_dssp TTTTCTTCCEEEECT
T ss_pred HhhCCCCCCEEEeCC
Confidence 355566666666654
No 162
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=80.52 E-value=0.25 Score=49.51 Aligned_cols=130 Identities=12% Similarity=0.175 Sum_probs=81.5
Q ss_pred hhCCCccEEEcCCCCCChHHHHHHHHHhhcCCCCCEEEccCCCCChHHHHHHHHhhhcCccccceeeccCCCCChhHHHH
Q 007577 299 LENSTIRSLHLNGNYGGALGANALAKGLEGNKSLRELHLHGNSIGDEGIRALMSGLSSRKGKLAVLDIGNNSISAKGAFH 378 (597)
Q Consensus 299 ~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~ 378 (597)
..+..|+.+.+..+ +...+. .++.++..|+.+.+..+ ++. +....+..+..|+.+.+..+ +...
T Consensus 214 ~~~~~l~~i~~~~~-~~~i~~----~~f~~~~~L~~i~lp~~-v~~-----I~~~aF~~~~~l~~i~l~~~-i~~i---- 277 (379)
T 4h09_A 214 SYGKNLKKITITSG-VTTLGD----GAFYGMKALDEIAIPKN-VTS-----IGSFLLQNCTALKTLNFYAK-VKTV---- 277 (379)
T ss_dssp TTCSSCSEEECCTT-CCEECT----TTTTTCSSCCEEEECTT-CCE-----ECTTTTTTCTTCCEEEECCC-CSEE----
T ss_pred ccccccceeeeccc-eeEEcc----ccccCCccceEEEcCCC-ccE-----eCccccceeehhcccccccc-ceec----
Confidence 35677888887654 232222 33567888998888654 332 22223345567888888654 3331
Q ss_pred HHHHHHcCCCCcEEEccCCCCCcHHHHHHHHHHhcCCCccEEEccCCCCChHHHHHHHHHhhcCCCcCEEECcCC
Q 007577 379 VAEYIKNCKSLLWINLYMNDIGDEGAEKIADALKQNRTITTIDLGGNNIHSKGASAIARVLKDNSVITSLDLAYN 453 (597)
Q Consensus 379 l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n 453 (597)
-...+..|.+|+.+.+.++.++..+. .++..+.+|+.+.|..+ ++..+. .++.+|.+|+.+.+..+
T Consensus 278 ~~~aF~~c~~L~~i~l~~~~i~~I~~----~aF~~c~~L~~i~lp~~-l~~I~~----~aF~~C~~L~~i~ip~~ 343 (379)
T 4h09_A 278 PYLLCSGCSNLTKVVMDNSAIETLEP----RVFMDCVKLSSVTLPTA-LKTIQV----YAFKNCKALSTISYPKS 343 (379)
T ss_dssp CTTTTTTCTTCCEEEECCTTCCEECT----TTTTTCTTCCEEECCTT-CCEECT----TTTTTCTTCCCCCCCTT
T ss_pred cccccccccccccccccccccceehh----hhhcCCCCCCEEEcCcc-ccEEHH----HHhhCCCCCCEEEECCc
Confidence 11346788999999998776654211 35667889999999754 444322 23667899999988655
No 163
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=79.45 E-value=1 Score=37.30 Aligned_cols=36 Identities=33% Similarity=0.303 Sum_probs=20.9
Q ss_pred CccEEEcCCCCCChHHHHHHHHHhhcCCCCCEEEccCCCC
Q 007577 303 TIRSLHLNGNYGGALGANALAKGLEGNKSLRELHLHGNSI 342 (597)
Q Consensus 303 ~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i 342 (597)
+|++|+|++|.|+.... ..|..+++|+.|+|++|.+
T Consensus 32 ~l~~L~Ls~N~l~~l~~----~~f~~l~~L~~L~L~~NP~ 67 (130)
T 3rfe_A 32 DTTELVLTGNNLTALPP----GLLDALPALRTAHLGANPW 67 (130)
T ss_dssp TCSEEECTTSCCSSCCT----TTGGGCTTCCEEECCSSCC
T ss_pred CCCEEECCCCcCCccCh----hhhhhccccCEEEecCCCe
Confidence 46666666666555443 2244566677777776654
No 164
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=78.38 E-value=0.58 Score=38.84 Aligned_cols=35 Identities=20% Similarity=0.107 Sum_probs=16.2
Q ss_pred CcCEEecCCCCCChhHHHHHHHHHhcCCCccEEEccCCC
Q 007577 472 NINTLKLGWCQIGASGAEFVADMLRYNNTISILDLRANG 510 (597)
Q Consensus 472 ~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~n~ 510 (597)
+|++|+|++|+|+...... +...++|+.|+|.+|.
T Consensus 32 ~l~~L~Ls~N~l~~l~~~~----f~~l~~L~~L~L~~NP 66 (130)
T 3rfe_A 32 DTTELVLTGNNLTALPPGL----LDALPALRTAHLGANP 66 (130)
T ss_dssp TCSEEECTTSCCSSCCTTT----GGGCTTCCEEECCSSC
T ss_pred CCCEEECCCCcCCccChhh----hhhccccCEEEecCCC
Confidence 4555555555544432222 2233555555555553
Done!