Citrus Sinensis ID: 007578

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------
MTIAQLNGGGRLCSGVGSRNRLWNTVAKANASRFSLQQSRIGDGCAAFDSSCRLSLEHSNCVSSLLTRRRKHNFPVVYDQLNSDCSVESLDTETRLVLGEENGFTNSNKEHSEMRGVTVSESHTLVEKIEVASKSHTQDAKNELIVLTLPAIAGQVIDPLAQLMETAYVGRLGSVELASAGVSISIFNIVSKLFNIPLLSVATSFVAEDIAKNLTKDLAAGLEGNGKPPNGTTERKQLSSVSTALLLAVGIGIFEAAALSLASGPFLNLMGVPSASAMHGPAKKFLMLRALGSPAFVVSLALQGIFRGFKDTKTPVLCLGIGNLLAVFLFPILIYFCQLGMPGAAISTVVSQYIVAVTMIWFLNKKVVLMPPKMGALQFGDYVKSGGFLLGRTLAVLITMTLGTSMAARQGSDAMAAHQICMQVWLAVSLLTDALAASGQALIASYVSKGDFKTVREITNFVLKIGVLTGVSLATILGLSFGSLAPLFTKDPKVLGIVGTGVLFVSASQPINALAFIFDGLHYGVSDFRYAACSMMLVGAMSSTFLLYAPRATGLPGVWAGLTLFMGLRTVAGFVRLLSKSGPWWFLHTDLEGAKAN
ccEEEccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHcccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccc
cccHEccccccEcccccccccccccEEEccccEEcccccEccHHHHHccccccccccccccccccEEccccccEEEEEccccccccccccccEEccccccccccccccccccccccccccccccHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHccHccHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHEHHHHHHHHHHHHHHHHHHccccccEEEcccccccccc
mtiaqlngggrlcsgvgsrnRLWNTVAKANASRFSlqqsrigdgcaafdsscrlslehsncvsslltrrrkhnfpvvydqlnsdcsvesldtETRLVlgeengftnsnkehsemrgvtvseSHTLVEKIEVASKSHTQDAKNELIVLTlpaiagqvIDPLAQLMETAYVGRLGSVELASAGVSISIFNIVSKLFNIPLLSVATSFVAEDIAKNLTKDLAaglegngkppngtterkqLSSVSTALLLAVGIGIFEAAALSlasgpflnlmgvpsasamhgpakKFLMLRALGSPAFVVSLALQGIfrgfkdtktpvlCLGIGNLLAVFLFPILIYFcqlgmpgaaISTVVSQYIVAVTMIWFLNKkvvlmppkmgalqfgdyvksggFLLGRTLAVLITMTLGTSMAARQGSDAMAAHQICMQVWLAVSLLTDALAASGQALIASYVSKGDFKTVREITNFVLKIGVLTGVSLATILGlsfgslaplftkdpkvlgivGTGVLFVSASQPINALAFIFdglhygvsDFRYAACSMMLVGAMSSTfllyapratglpgvwAGLTLFMGLRTVAGFVRLLsksgpwwflhtdlegakan
mtiaqlngggrlcsgvgsrNRLWNTVAKANASRFSLQQSRIGDGCAAFDSSCRLSLEHSNCVSSLLTRRRKHNFPVVydqlnsdcsveslDTETRLVLGeengftnsnkehsemrgVTVSESHTLVEKIEVAskshtqdaKNELIVLTLPAIAGQVIDPLAQLMETAYVGRLGSVELASAGVSISIFNIVSKLFNIPLLSVATSFVAEDIAKNLTKDLAAGLEGNGKPPNGTTERKQLSSVSTALLLAVGIGIFEAAALSLASGPFLNLMGVPSASAMHGPAKKFLMLRALGSPAFVVSLALQGIFRGFKDTKTPVLCLGIGNLLAVFLFPILIYFCQLGMPGAAISTVVSQYIVAVTMIWFLNKKVVLMPPKMGALQFGDYVKSGGFLLGRTLAVLITMTLGTSMAARQGSDAMAAHQICMQVWLAVSLLTDALAASGQALIASYVSKGDFKTVREITNFVLKIGVLTGVSLATILGLSFGSLAPLFTKDPKVLGIVGTGVLFVSASQPINALAFIFDGLHYGVSDFRYAACSMMLVGAMSSTFLLYAPRATGLPGVWAGLTLFMGLRTVAGFVRLLSksgpwwflhtdlegakan
MTIAQLNGGGRLCSGVGSRNRLWNTVAKANASRFSLQQSRIGDGCAAFDSSCRLSLEHSNCVSSLLTRRRKHNFPVVYDQLNSDCSVESLDTETRLVLGEENGFTNSNKEHSEMRGVTVSESHTLVEKIEVASKSHTQDAKNELIVLTLPAIAGQVIDPLAQLMETAYVGRLGSVELASAGVSISIFNIVSKLFNIPLLSVATSFVAEDIAKNLTKDLAAGLEGNGKPPNGTTERKQlssvstalllavGIGIFEAAALSLASGPFLNLMGVPSASAMHGPAKKFLMLRALGSPAFVVSLALQGIFRGFKDTKTPVLCLGIGNLLAVFLFPILIYFCQLGMPGAAISTVVSQYIVAVTMIWFLNKKVVLMPPKMGALQFGDYVKSGGFLLGRTLAVLITMTLGTSMAARQGSDAMAAHQICMQVWLAVSLLTDALAASGQALIASYVSKGDFKTVREITNFVLKIGVLTGVSLATILGLSFGSLAPLFTKDPKVLGIVGTGVLFVSASQPINALAFIFDGLHYGVSDFRYAACSMMLVGAMSSTFLLYAPRATGLPGVWAGLTLFMGLRTVAGFVRLLSKSGPWWFLHTDLEGAKAN
**********RLCSGVGSRNRLWNTVAKANASRFSLQQSRIGDGCAAFDSSCRLSLEHSNCVSSLLTRRRKHNFPVVYDQLNSDCSVESLDTETRLV********************************************NELIVLTLPAIAGQVIDPLAQLMETAYVGRLGSVELASAGVSISIFNIVSKLFNIPLLSVATSFVAEDIAKNLTKDL**********************VSTALLLAVGIGIFEAAALSLASGPFLNLMGVPSASAMHGPAKKFLMLRALGSPAFVVSLALQGIFRGFKDTKTPVLCLGIGNLLAVFLFPILIYFCQLGMPGAAISTVVSQYIVAVTMIWFLNKKVVLMPPKMGALQFGDYVKSGGFLLGRTLAVLITMTLGTSMAARQGSDAMAAHQICMQVWLAVSLLTDALAASGQALIASYVSKGDFKTVREITNFVLKIGVLTGVSLATILGLSFGSLAPLFTKDPKVLGIVGTGVLFVSASQPINALAFIFDGLHYGVSDFRYAACSMMLVGAMSSTFLLYAPRATGLPGVWAGLTLFMGLRTVAGFVRLLSKSGPWWFLHTDL******
*********G**CSG******************************************************************************************************************************NELIVLTLPAIAGQVIDPLAQLMETAYVGRLGSVELASAGVSISIFNIVSKLFNIPLLSVATSFVAEDIA**********************ERKQLSSVSTALLLAVGIGIFEAAALSLASGPFLNLMGVPSASAMHGPAKKFLMLRALGSPAFVVSLALQGIFRGFKDTKTPVLCLGIGNLLAVFLFPILIYFCQLGMPGAAISTVVSQYIVAVTMIWFLNKKVVLMPPKMGALQFGDYVKSGGFLLGRTLAVLITMTLGTSMAARQGSDAMAAHQICMQVWLAVSLLTDALAASGQALIASYVSKGDFKTVREITNFVLKIGVLTGVSLATILGLSFGSLAPLFTKDPKVLGIVGTGVLFVSASQPINALAFIFDGLHYGVSDFRYAACSMMLVGAMSSTFLLYAPRATGLPGVWAGLTLFMGLRTVAGFVRLLSKSGPWWFLHT********
MTIAQLNGGGRLCSGVGSRNRLWNTVAKANASRFSLQQSRIGDGCAAFDSSCRLSLEHSNCVSSLLTRRRKHNFPVVYDQLNSDCSVESLDTETRLVLGEENGFTNSNKEHSEMRGVTVSESHTLVEKIEVASKSHTQDAKNELIVLTLPAIAGQVIDPLAQLMETAYVGRLGSVELASAGVSISIFNIVSKLFNIPLLSVATSFVAEDIAKNLTKDLAAGLEGNGKPP***********VSTALLLAVGIGIFEAAALSLASGPFLNLMGVPSASAMHGPAKKFLMLRALGSPAFVVSLALQGIFRGFKDTKTPVLCLGIGNLLAVFLFPILIYFCQLGMPGAAISTVVSQYIVAVTMIWFLNKKVVLMPPKMGALQFGDYVKSGGFLLGRTLAVLITMTLGTSMAARQGSDAMAAHQICMQVWLAVSLLTDALAASGQALIASYVSKGDFKTVREITNFVLKIGVLTGVSLATILGLSFGSLAPLFTKDPKVLGIVGTGVLFVSASQPINALAFIFDGLHYGVSDFRYAACSMMLVGAMSSTFLLYAPRATGLPGVWAGLTLFMGLRTVAGFVRLLSKSGPWWFLHTDLEGAKAN
**********R*CSGVGSRNRLWNTVAKANASRFSLQQSRIGDGCAAFDSSCRLSLEHSNCVSSLLTRRRKHNFPVVYDQLNS*CSVESLDTETRL**G************************T*VEKIEVASKSHTQDAKNELIVLTLPAIAGQVIDPLAQLMETAYVGRLGSVELASAGVSISIFNIVSKLFNIPLLSVATSFVAEDIAKNL***************NGTTERKQLSSVSTALLLAVGIGIFEAAALSLASGPFLNLMGVPSASAMHGPAKKFLMLRALGSPAFVVSLALQGIFRGFKDTKTPVLCLGIGNLLAVFLFPILIYFCQLGMPGAAISTVVSQYIVAVTMIWFLNKKVVLMPPKMGALQFGDYVKSGGFLLGRTLAVLITMTLGTSMAARQGSDAMAAHQICMQVWLAVSLLTDALAASGQALIASYVSKGDFKTVREITNFVLKIGVLTGVSLATILGLSFGSLAPLFTKDPKVLGIVGTGVLFVSASQPINALAFIFDGLHYGVSDFRYAACSMMLVGAMSSTFLLYAPRATGLPGVWAGLTLFMGLRTVAGFVRLLSKSGPWWFLHT********
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiii
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiii
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiHHHHHHHHHHHHHHHHHHHHooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiii
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiHHHHHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiii
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiii
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
MTIAQLNGGGRLCSGVGSRNRLWNTVAKANASRFSLQQSRIGDGCAAFDSSCRLSLEHSNCVSSLLTRRRKHNFPVVYDQLNSDCSVESLDTETRLVLGEENGFTNSNKEHSEMRGVTVSESHTLVEKIEVASKSHTQDAKNELIVLTLPAIAGQVIDPLAQLMETAYVGRLGSVELASAGVSISIFNIVSKLFNIPLLSVATSFVAEDIAKNLTKDLAAGLEGNGKPPNGTTERKQLSSVSTALLLAVGIGIFEAAALSLASGPFLNLMGVPSASAMHGPAKKFLMLRALGSPAFVVSLALQGIFRGFKDTKTPVLCLGIGNLLAVFLFPILIYFCQLGMPGAAISTVVSQYIVAVTMIWFLNKKVVLMPPKMGALQFGDYVKSGGFLLGRTLAVLITMTLGTSMAARQGSDAMAAHQICMQVWLAVSLLTDALAASGQALIASYVSKGDFKTVREITNFVLKIGVLTGVSLATILGLSFGSLAPLFTKDPKVLGIVGTGVLFVSASQPINALAFIFDGLHYGVSDFRYAACSMMLVGAMSSTFLLYAPRATGLPGVWAGLTLFMGLRTVAGFVRLLSKSGPWWFLHTDLEGAKAN
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query597 2.2.26 [Sep-21-2011]
Q9SVE7560 MATE efflux family protei yes no 0.901 0.960 0.626 0.0
Q84K71521 MATE efflux family protei no no 0.711 0.815 0.510 1e-116
Q9SFB0526 MATE efflux family protei no no 0.713 0.809 0.410 2e-96
Q9SYD6515 MATE efflux family protei no no 0.720 0.834 0.418 4e-94
Q8W4G3559 MATE efflux family protei no no 0.681 0.728 0.271 1e-16
Q9WZS2464 Probable multidrug resist yes no 0.546 0.702 0.239 6e-12
P76352495 Uncharacterized transport N/A no 0.706 0.852 0.227 4e-08
Q945F0543 Enhanced disease suscepti no no 0.542 0.596 0.234 7e-08
Q58119450 Uncharacterized transport yes no 0.656 0.871 0.227 3e-07
Q7N1G0453 Probable multidrug resist yes no 0.696 0.918 0.229 3e-06
>sp|Q9SVE7|MATE3_ARATH MATE efflux family protein 3, chloroplastic OS=Arabidopsis thaliana GN=DTX45 PE=2 SV=2 Back     alignment and function desciption
 Score =  674 bits (1740), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 358/571 (62%), Positives = 433/571 (75%), Gaps = 33/571 (5%)

Query: 20  NRLWNTVAKANASRFS-LQQSRIGDGCAAFDSSCRLSLEHSNCVSSLLTRRRKHNFPVVY 78
           NR  ++ AK    + + L  SRI +  A     C L   + N +   +TRR+        
Sbjct: 16  NRRNSSFAKPKIQQGTFLPLSRINNVSA--PQKCSLH-TNPNPMFPFVTRRK-------- 64

Query: 79  DQLNSDCSVESLDTETRLVLGEENGFTNSNKEHSEMRGVTVSESHTLVEKIEVASKSHTQ 138
            Q N DC V        + LGEE+   +S  +  E+ GV     HT V +          
Sbjct: 65  SQTNPDCGV--------VKLGEEDDSCSSLDKLPEVNGV-----HTGVAR--------PV 103

Query: 139 DAKNELIVLTLPAIAGQVIDPLAQLMETAYVGRLGSVELASAGVSISIFNIVSKLFNIPL 198
           D K EL++L+LPAIAGQ IDPL  LMETAY+GRLGSVEL SAGVS++IFN +SKLFNIPL
Sbjct: 104 DIKRELVMLSLPAIAGQAIDPLTLLMETAYIGRLGSVELGSAGVSMAIFNTISKLFNIPL 163

Query: 199 LSVATSFVAEDIAKNLTKDLAAGLEGNGKPPNGTTERKQLSSVSTALLLAVGIGIFEAAA 258
           LSVATSFVAEDIAK   +DLA+    +  P  G  ERKQLSSVSTAL+LA+GIGIFEA A
Sbjct: 164 LSVATSFVAEDIAKIAAQDLASEDSQSDIPSQGLPERKQLSSVSTALVLAIGIGIFEALA 223

Query: 259 LSLASGPFLNLMGVPSASAMHGPAKKFLMLRALGSPAFVVSLALQGIFRGFKDTKTPVLC 318
           LSLASGPFL LMG+ S S M  PA++FL+LRALG+PA+VVSLALQGIFRGFKDTKTPV C
Sbjct: 224 LSLASGPFLRLMGIQSMSEMFIPARQFLVLRALGAPAYVVSLALQGIFRGFKDTKTPVYC 283

Query: 319 LGIGNLLAVFLFPILIYFCQLGMPGAAISTVVSQYIVAVTMIWFLNKKVVLMPPKMGALQ 378
           LGIGN LAVFLFP+ IY  ++G+ GAAIS+V+SQY VA+ M+  LNK+V+L+PPK+G+L+
Sbjct: 284 LGIGNFLAVFLFPLFIYKFRMGVAGAAISSVISQYTVAILMLILLNKRVILLPPKIGSLK 343

Query: 379 FGDYVKSGGFLLGRTLAVLITMTLGTSMAARQGSDAMAAHQICMQVWLAVSLLTDALAAS 438
           FGDY+KSGGF+LGRTL+VL+TMT+ TSMAARQG  AMAAHQICMQVWLAVSLLTDALA+S
Sbjct: 344 FGDYLKSGGFVLGRTLSVLVTMTVATSMAARQGVFAMAAHQICMQVWLAVSLLTDALASS 403

Query: 439 GQALIASYVSKGDFKTVREITNFVLKIGVLTGVSLATILGLSFGSLAPLFTKDPKVLGIV 498
           GQALIAS  SK DF+ V+E+T FVLKIGV+TG++LA +LG+SF S+A LF+KDP+VL IV
Sbjct: 404 GQALIASSASKRDFEGVKEVTTFVLKIGVVTGIALAIVLGMSFSSIAGLFSKDPEVLRIV 463

Query: 499 GTGVLFVSASQPINALAFIFDGLHYGVSDFRYAACSMMLVGAMSSTFLLYAPRATGLPGV 558
             GVLFV+A+QPI ALAFIFDGLHYG+SDF YAACSMM+VG +SS F+LYAP   GL GV
Sbjct: 464 RKGVLFVAATQPITALAFIFDGLHYGMSDFPYAACSMMVVGGISSAFMLYAPAGLGLSGV 523

Query: 559 WAGLTLFMGLRTVAGFVRLLSKSGPWWFLHT 589
           W GL++FMGLR VAGF RL+ + GPWWF+HT
Sbjct: 524 WVGLSMFMGLRMVAGFSRLMWRKGPWWFMHT 554

Arabidopsis thaliana (taxid: 3702)
>sp|Q84K71|MATE2_ARATH MATE efflux family protein 2, chloroplastic OS=Arabidopsis thaliana GN=DTX44 PE=2 SV=1 Back     alignment and function description
>sp|Q9SFB0|FRD3_ARATH MATE efflux family protein FRD3 OS=Arabidopsis thaliana GN=FRD3 PE=1 SV=1 Back     alignment and function description
>sp|Q9SYD6|MATE1_ARATH MATE efflux family protein 1 OS=Arabidopsis thaliana GN=MATE PE=2 SV=2 Back     alignment and function description
>sp|Q8W4G3|MATE4_ARATH MATE efflux family protein 4, chloroplastic OS=Arabidopsis thaliana GN=DTX46 PE=2 SV=1 Back     alignment and function description
>sp|Q9WZS2|NORM_THEMA Probable multidrug resistance protein NorM OS=Thermotoga maritima (strain ATCC 43589 / MSB8 / DSM 3109 / JCM 10099) GN=norM PE=3 SV=1 Back     alignment and function description
>sp|P76352|YEEO_ECOLI Uncharacterized transporter YeeO OS=Escherichia coli (strain K12) GN=yeeO PE=3 SV=3 Back     alignment and function description
>sp|Q945F0|EDS5_ARATH Enhanced disease susceptibility 5 OS=Arabidopsis thaliana GN=EDS5 PE=2 SV=1 Back     alignment and function description
>sp|Q58119|Y709_METJA Uncharacterized transporter MJ0709 OS=Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440) GN=MJ0709 PE=3 SV=1 Back     alignment and function description
>sp|Q7N1G0|NORM_PHOLL Probable multidrug resistance protein NorM OS=Photorhabdus luminescens subsp. laumondii (strain TT01) GN=norM PE=3 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query597
297744535604 unnamed protein product [Vitis vinifera] 0.882 0.872 0.668 0.0
359474812601 PREDICTED: MATE efflux family protein 3, 0.879 0.873 0.667 0.0
255569690605 DNA-damage-inducible protein f, putative 0.963 0.950 0.638 0.0
240256229560 mate efflux domain-containing protein [A 0.901 0.960 0.626 0.0
224078541442 predicted protein [Populus trichocarpa] 0.740 1.0 0.770 0.0
449454410603 PREDICTED: MATE efflux family protein 3, 0.953 0.943 0.610 0.0
224105071430 predicted protein [Populus trichocarpa] 0.720 1.0 0.754 0.0
297801920539 hypothetical protein ARALYDRAFT_490600 [ 0.867 0.961 0.616 0.0
449500206493 PREDICTED: MATE efflux family protein 3, 0.773 0.937 0.717 1e-179
357495629586 Transporter, putative [Medicago truncatu 0.809 0.824 0.668 1e-179
>gi|297744535|emb|CBI37797.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
 Score =  703 bits (1814), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 365/546 (66%), Positives = 423/546 (77%), Gaps = 19/546 (3%)

Query: 55  SLEHSNCVSSLLTRRRKHNFPVVYDQLNSDCSVESLDTETRLVLGEENGFTNSNKEHSEM 114
           SL+     S L+T RRKH FPV  + L SDC V+S + E  +V+ + N    S+ E  E+
Sbjct: 64  SLDLLRPFSPLVTCRRKHVFPVFNNHLGSDCGVDSSEVEENIVVEKGNDIGKSS-EVREL 122

Query: 115 RGVTVSESHTLVEKIEVASKSHTQDAKNELIVLTLPAIAGQVIDPLAQLMETAYVGRLGS 174
           +G+T + S +L               K ELI+L+LPA+AGQ +DPLAQLMETAY+GRLG 
Sbjct: 123 KGITATLSRSL-------------GVKRELIMLSLPAMAGQALDPLAQLMETAYIGRLGP 169

Query: 175 VELASAGVSISIFNIVSKLFNIPLLSVATSFVAEDIAKNL-----TKDLAAGLEGNGKPP 229
           VELASAGVSISIFNI+SKLFNIPLLS++TSFVAEDI+KN      +++       NG P 
Sbjct: 170 VELASAGVSISIFNIISKLFNIPLLSISTSFVAEDISKNAINNSASEEFYQEESTNGTPF 229

Query: 230 NGTTERKQLSSVSTALLLAVGIGIFEAAALSLASGPFLNLMGVPSASAMHGPAKKFLMLR 289
            G TER QLSSVSTALLLAVGIGIFEA AL   SG FLNLMG+P AS+MH PA++FL LR
Sbjct: 230 VGVTERMQLSSVSTALLLAVGIGIFEAFALYFGSGWFLNLMGIPLASSMHAPARRFLSLR 289

Query: 290 ALGSPAFVVSLALQGIFRGFKDTKTPVLCLGIGNLLAVFLFPILIYFCQLGMPGAAISTV 349
           ALG+PA VVSLALQGI RGFKDTKTPVLCLG+GN  AVFLFPIL+Y+ QLG+ GAAISTV
Sbjct: 290 ALGAPAVVVSLALQGILRGFKDTKTPVLCLGVGNFAAVFLFPILMYYFQLGVTGAAISTV 349

Query: 350 VSQYIVAVTMIWFLNKKVVLMPPKMGALQFGDYVKSGGFLLGRTLAVLITMTLGTSMAAR 409
           VSQYIV   MIW LNK+ VL+PPKMG LQFGDY+KSGGFLLGRTLAVL TMTL TS+AAR
Sbjct: 350 VSQYIVTFLMIWHLNKRAVLLPPKMGTLQFGDYIKSGGFLLGRTLAVLATMTLATSVAAR 409

Query: 410 QGSDAMAAHQICMQVWLAVSLLTDALAASGQALIASYVSKGDFKTVREITNFVLKIGVLT 469
           QG  AMA HQIC+QVWLAVSLLTDALAAS QA+IAS +SKGD+K V+EIT FVLK G+ T
Sbjct: 410 QGPIAMAGHQICLQVWLAVSLLTDALAASAQAMIASSLSKGDYKAVKEITYFVLKTGLFT 469

Query: 470 GVSLATILGLSFGSLAPLFTKDPKVLGIVGTGVLFVSASQPINALAFIFDGLHYGVSDFR 529
           G+ LA  L   +GSLA +FTKD +VLGIV TGVLFV ASQPIN+LAFIFDGLH+G SDF 
Sbjct: 470 GIFLAVALSAFYGSLATIFTKDIEVLGIVRTGVLFVCASQPINSLAFIFDGLHFGASDFP 529

Query: 530 YAACSMMLVGAMSSTFLLYAPRATGLPGVWAGLTLFMGLRTVAGFVRLLSKSGPWWFLHT 589
           YAA SMM++GA+ S FLLY P   GL GVW GLTLFMGLR VAG +RL SK+GPWWFLH 
Sbjct: 530 YAARSMMVIGAICSAFLLYVPSLLGLQGVWLGLTLFMGLRMVAGVIRLASKTGPWWFLHE 589

Query: 590 DLEGAK 595
           D + A+
Sbjct: 590 DFQMAE 595

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|359474812|ref|XP_002278724.2| PREDICTED: MATE efflux family protein 3, chloroplastic-like [Vitis vinifera] Back     alignment and taxonomy information
>gi|255569690|ref|XP_002525810.1| DNA-damage-inducible protein f, putative [Ricinus communis] gi|223534897|gb|EEF36584.1| DNA-damage-inducible protein f, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|240256229|ref|NP_195551.5| mate efflux domain-containing protein [Arabidopsis thaliana] gi|325530113|sp|Q9SVE7.2|MATE3_ARATH RecName: Full=MATE efflux family protein 3, chloroplastic; AltName: Full=Protein DTX45; Flags: Precursor gi|332661521|gb|AEE86921.1| mate efflux domain-containing protein [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|224078541|ref|XP_002305555.1| predicted protein [Populus trichocarpa] gi|222848519|gb|EEE86066.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|449454410|ref|XP_004144948.1| PREDICTED: MATE efflux family protein 3, chloroplastic-like [Cucumis sativus] gi|449473238|ref|XP_004153826.1| PREDICTED: MATE efflux family protein 3, chloroplastic-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|224105071|ref|XP_002313675.1| predicted protein [Populus trichocarpa] gi|222850083|gb|EEE87630.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|297801920|ref|XP_002868844.1| hypothetical protein ARALYDRAFT_490600 [Arabidopsis lyrata subsp. lyrata] gi|297314680|gb|EFH45103.1| hypothetical protein ARALYDRAFT_490600 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|449500206|ref|XP_004161035.1| PREDICTED: MATE efflux family protein 3, chloroplastic-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|357495629|ref|XP_003618103.1| Transporter, putative [Medicago truncatula] gi|355519438|gb|AET01062.1| Transporter, putative [Medicago truncatula] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query597
TAIR|locus:2121783560 AT4G38380 [Arabidopsis thalian 0.802 0.855 0.666 4.2e-166
TAIR|locus:2057135521 AT2G38330 "AT2G38330" [Arabido 0.728 0.834 0.487 3.1e-106
TAIR|locus:2077477526 FRD3 "FERRIC REDUCTASE DEFECTI 0.564 0.640 0.451 6.9e-94
TAIR|locus:2008236515 AT1G51340 [Arabidopsis thalian 0.597 0.693 0.439 5.5e-92
TAIR|locus:2050140559 AT2G21340 [Arabidopsis thalian 0.505 0.540 0.269 5.3e-20
UNIPROTKB|P28303459 dinF "DinF MATE Transporter" [ 0.539 0.701 0.228 9.4e-15
TIGR_CMR|CPS_2888462 CPS_2888 "MATE efflux family p 0.690 0.891 0.232 3e-13
TAIR|locus:2120267543 EDS5 "AT4G39030" [Arabidopsis 0.485 0.534 0.239 4.9e-13
UNIPROTKB|P76352495 yeeO "YeeO MATE transporter" [ 0.505 0.610 0.259 1.3e-12
UNIPROTKB|Q48DJ8446 dinF "DNA-damage-inducible pro 0.549 0.735 0.265 2.8e-12
TAIR|locus:2121783 AT4G38380 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1616 (573.9 bits), Expect = 4.2e-166, P = 4.2e-166
 Identities = 328/492 (66%), Positives = 391/492 (79%)

Query:    98 LGEENGFTNSNKEHSEMRGVTVSESHTLVEKIEVASKSHTQDAKNELIVLTLPAIAGQVI 157
             LGEE+   +S  +  E+ GV     HT V +          D K EL++L+LPAIAGQ I
Sbjct:    76 LGEEDDSCSSLDKLPEVNGV-----HTGVAR--------PVDIKRELVMLSLPAIAGQAI 122

Query:   158 DPLAQLMETAYVGRLGSVELASAGVSISIFNIVSKLFNIPLLSVATSFVAEDIAKNLTKD 217
             DPL  LMETAY+GRLGSVEL SAGVS++IFN +SKLFNIPLLSVATSFVAEDIAK   +D
Sbjct:   123 DPLTLLMETAYIGRLGSVELGSAGVSMAIFNTISKLFNIPLLSVATSFVAEDIAKIAAQD 182

Query:   218 LAAGLEGNGKPPNGTTERKQXXXXXXXXXXXXGIGIFEAAALSLASGPFLNLMGVPSASA 277
             LA+    +  P  G  ERKQ            GIGIFEA ALSLASGPFL LMG+ S S 
Sbjct:   183 LASEDSQSDIPSQGLPERKQLSSVSTALVLAIGIGIFEALALSLASGPFLRLMGIQSMSE 242

Query:   278 MHGPAKKFLMLRALGSPAFVVSLALQGIFRGFKDTKTPVLCLGIGNLLAVFLFPILIYFC 337
             M  PA++FL+LRALG+PA+VVSLALQGIFRGFKDTKTPV CLGIGN LAVFLFP+ IY  
Sbjct:   243 MFIPARQFLVLRALGAPAYVVSLALQGIFRGFKDTKTPVYCLGIGNFLAVFLFPLFIYKF 302

Query:   338 QLGMPGAAISTVVSQYIVAVTMIWFLNKKVVLMPPKMGALQFGDYVKSGGFLLGRTLAVL 397
             ++G+ GAAIS+V+SQY VA+ M+  LNK+V+L+PPK+G+L+FGDY+KSGGF+LGRTL+VL
Sbjct:   303 RMGVAGAAISSVISQYTVAILMLILLNKRVILLPPKIGSLKFGDYLKSGGFVLGRTLSVL 362

Query:   398 ITMTLGTSMAARQGSDAMAAHQICMQVWLAVSLLTDALAASGQALIASYVSKGDFKTVRE 457
             +TMT+ TSMAARQG  AMAAHQICMQVWLAVSLLTDALA+SGQALIAS  SK DF+ V+E
Sbjct:   363 VTMTVATSMAARQGVFAMAAHQICMQVWLAVSLLTDALASSGQALIASSASKRDFEGVKE 422

Query:   458 ITNFVLKIGVLTGVSLATILGLSFGSLAPLFTKDPKVLGIVGTGVLFVSASQPINALAFI 517
             +T FVLKIGV+TG++LA +LG+SF S+A LF+KDP+VL IV  GVLFV+A+QPI ALAFI
Sbjct:   423 VTTFVLKIGVVTGIALAIVLGMSFSSIAGLFSKDPEVLRIVRKGVLFVAATQPITALAFI 482

Query:   518 FDGLHYGVSDFRYAACSMMLVGAMSSTFLLYAPRATGLPGVWAGLTLFMGLRTVAGFVRL 577
             FDGLHYG+SDF YAACSMM+VG +SS F+LYAP   GL GVW GL++FMGLR VAGF RL
Sbjct:   483 FDGLHYGMSDFPYAACSMMVVGGISSAFMLYAPAGLGLSGVWVGLSMFMGLRMVAGFSRL 542

Query:   578 LSKSGPWWFLHT 589
             + + GPWWF+HT
Sbjct:   543 MWRKGPWWFMHT 554
GO:0005886 "plasma membrane" evidence=ISM
GO:0006855 "drug transmembrane transport" evidence=IEA
GO:0015238 "drug transmembrane transporter activity" evidence=IEA
GO:0015297 "antiporter activity" evidence=IEA
GO:0016020 "membrane" evidence=IEA
GO:0055085 "transmembrane transport" evidence=IEA
GO:0009507 "chloroplast" evidence=IDA
TAIR|locus:2057135 AT2G38330 "AT2G38330" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2077477 FRD3 "FERRIC REDUCTASE DEFECTIVE 3" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2008236 AT1G51340 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2050140 AT2G21340 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|P28303 dinF "DinF MATE Transporter" [Escherichia coli K-12 (taxid:83333)] Back     alignment and assigned GO terms
TIGR_CMR|CPS_2888 CPS_2888 "MATE efflux family protein" [Colwellia psychrerythraea 34H (taxid:167879)] Back     alignment and assigned GO terms
TAIR|locus:2120267 EDS5 "AT4G39030" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|P76352 yeeO "YeeO MATE transporter" [Escherichia coli K-12 (taxid:83333)] Back     alignment and assigned GO terms
UNIPROTKB|Q48DJ8 dinF "DNA-damage-inducible protein F" [Pseudomonas syringae pv. phaseolicola 1448A (taxid:264730)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q9SVE7MATE3_ARATHNo assigned EC number0.62690.90110.9607yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query597
cd13136424 cd13136, MATE_DinF_like, DinF and similar proteins 1e-102
TIGR00797342 TIGR00797, matE, putative efflux protein, MATE fam 5e-51
COG0534455 COG0534, NorM, Na+-driven multidrug efflux pump [D 2e-50
cd13137432 cd13137, MATE_NorM_like, Subfamily of the multidru 4e-39
cd12082420 cd12082, MATE_like, Multidrug and toxic compound e 1e-33
cd13138431 cd13138, MATE_yoeA_like, Subfamily of the multidru 1e-33
cd13134438 cd13134, MATE_like_8, Uncharacterized subfamily of 3e-32
cd13140435 cd13140, MATE_like_1, Uncharacterized subfamily of 1e-26
cd13131435 cd13131, MATE_NorM_like, Subfamily of the multidru 1e-23
cd13149434 cd13149, MATE_like_2, Uncharacterized subfamily of 3e-22
cd13133438 cd13133, MATE_like_7, Uncharacterized subfamily of 3e-21
cd13143426 cd13143, MATE_MepA_like, Subfamily of the multidru 7e-21
cd13147441 cd13147, MATE_MJ0709_like, Uncharacterized subfami 1e-20
cd13142444 cd13142, MATE_like_12, Uncharacterized subfamily o 8e-20
cd13132436 cd13132, MATE_eukaryotic, Eukaryotic members of th 3e-15
PRK10189478 PRK10189, PRK10189, MATE family multidrug exporter 3e-12
pfam01554161 pfam01554, MatE, MatE 6e-12
cd13144434 cd13144, MATE_like_4, Uncharacterized subfamily of 8e-12
cd13148441 cd13148, MATE_like_3, Uncharacterized subfamily of 2e-11
cd13145440 cd13145, MATE_like_5, Uncharacterized subfamily of 3e-10
pfam01554161 pfam01554, MatE, MatE 5e-09
cd13139448 cd13139, MATE_like_14, Uncharacterized subfamily o 5e-09
cd13135429 cd13135, MATE_like_9, Uncharacterized subfamily of 8e-09
PRK10367441 PRK10367, PRK10367, DNA-damage-inducible SOS respo 3e-08
cd13124434 cd13124, MATE_SpoVB_like, Stage V sporulation prot 2e-07
PRK01766456 PRK01766, PRK01766, multidrug efflux protein; Revi 3e-07
PRK00187464 PRK00187, PRK00187, multidrug efflux protein NorA; 3e-06
cd13141443 cd13141, MATE_like_13, Uncharacterized subfamily o 4e-06
cd13125409 cd13125, MATE_like_10, Uncharacterized subfamily o 1e-05
cd13146433 cd13146, MATE_like_6, Uncharacterized subfamily of 3e-05
cd13138431 cd13138, MATE_yoeA_like, Subfamily of the multidru 1e-04
cd13128402 cd13128, MATE_Wzx_like, Wzx, a subfamily of the mu 1e-04
cd13123420 cd13123, MATE_MurJ_like, MurJ/MviN, a subfamily of 1e-04
COG2244480 COG2244, RfbX, Membrane protein involved in the ex 2e-04
cd13142444 cd13142, MATE_like_12, Uncharacterized subfamily o 0.002
cd13128402 cd13128, MATE_Wzx_like, Wzx, a subfamily of the mu 0.003
>gnl|CDD|240541 cd13136, MATE_DinF_like, DinF and similar proteins, a subfamily of the multidrug and toxic compound extrusion (MATE)-like proteins Back     alignment and domain information 
 Score =  315 bits (810), Expect = e-102
 Identities = 138/443 (31%), Positives = 223/443 (50%), Gaps = 28/443 (6%)

Query: 143 ELIVLTLPAIAGQVIDPLAQLMETAYVGRLGS-VELASAGVSISIFNIVSKLFNIPLLSV 201
           E++ L LPAI   +  PL  L++TA VG LGS   L +  +  +IFN +  LF    +  
Sbjct: 4   EILALALPAILSNITVPLLGLVDTAVVGHLGSAAYLGAVALGTTIFNTLFWLFGFLRMG- 62

Query: 202 ATSFVAEDIAKNLTKDLAAGLEGNGKPPNGTTERKQLSSVSTALLLAVGIGIFEAAALSL 261
            T  VA+ +                         + ++ +  ALLLA+ IG+      S 
Sbjct: 63  TTGLVAQALGAGD-------------------REEAIALLVRALLLALAIGLLLILLQSP 103

Query: 262 ASGPFLNLMGVPSASAMHGPAKKFLMLRALGSPAFVVSLALQGIFRGFKDTKTPVLCLGI 321
                L L+G  +++A+   A+++L +R LG+PA +++    G FRG +DT+TP++   +
Sbjct: 104 LLALALLLLG--ASAAVAALARQYLRIRILGAPAVLLNYVATGWFRGLQDTRTPLILQIV 161

Query: 322 GNLLAVFLFPILIYFCQLGMPGAAISTVVSQYIVAVTMIWFLNKKVVLMPPKM-----GA 376
           GN++ + L P+ ++    G+ GAA++TV++QY+ A+  +W L ++V L+   +       
Sbjct: 162 GNVVNIVLDPLFVFGLGWGVAGAALATVIAQYLGALLGLWLLRRRVRLLGKSLSRRLPSK 221

Query: 377 LQFGDYVKSGGFLLGRTLAVLITMTLGTSMAARQGSDAMAAHQICMQVWLAVSLLTDALA 436
                  K    +  RTLA+L      T++AAR G   +AA+QI +Q WL  S   D  A
Sbjct: 222 AALKRLFKLNRDIFIRTLALLAAFLFFTALAARLGDVILAANQILLQFWLLSSYFLDGFA 281

Query: 437 ASGQALIASYVSKGDFKTVREITNFVLKIGVLTGVSLATILGLSFGSLAPLFTKDPKVLG 496
            + +AL+   +  GD K  R +   +L+ G+  GV LA +  L    +  LFT DP VL 
Sbjct: 282 YAAEALVGRALGAGDRKAARRVARRLLQWGLGLGVLLALLFFLGGEPIIRLFTDDPAVLA 341

Query: 497 IVGTGVLFVSASQPINALAFIFDGLHYGVSDFRYAACSMMLVGAMSSTFLLYAPRATGLP 556
           +  T + +++   PI ALAF+ DG+  G +D RY   SM++  A+    L       G  
Sbjct: 342 LAATYLPWLALLPPIGALAFVLDGIFIGATDTRYLRNSMLVSLAVFLPLLFLLVPLWGNH 401

Query: 557 GVWAGLTLFMGLRTVAGFVRLLS 579
           G+W  L LFM LR +   +RL  
Sbjct: 402 GLWLALILFMLLRGLTLALRLPR 424

Escherichia coli DinF is a membrane protein that has been found to protect cells against oxidative stress and bile salts. The expression of DinF is regulated as part of the SOS system. It may act by detoxifying oxidizing molecules that have the potential to damage DNA. Some member of this family have been reported to enhance the virulence of plant pathogenic bacteria by enhancing their ability to grow in the presence of toxic compounds. Proteins from the MATE family are involved in exporting metabolites across the cell membrane and are often responsible for multidrug resistance (MDR). Length = 424
>gnl|CDD|233130 TIGR00797, matE, putative efflux protein, MATE family Back     alignment and domain information
>gnl|CDD|223608 COG0534, NorM, Na+-driven multidrug efflux pump [Defense mechanisms] Back     alignment and domain information
>gnl|CDD|240542 cd13137, MATE_NorM_like, Subfamily of the multidrug and toxic compound extrusion (MATE)-like proteins similar to Thermotoga marina NorM Back     alignment and domain information
>gnl|CDD|240527 cd12082, MATE_like, Multidrug and toxic compound extrusion family and similar proteins Back     alignment and domain information
>gnl|CDD|240543 cd13138, MATE_yoeA_like, Subfamily of the multidrug and toxic compound extrusion (MATE)-like proteins similar to Bacillus subtilis yoeA Back     alignment and domain information
>gnl|CDD|240539 cd13134, MATE_like_8, Uncharacterized subfamily of the multidrug and toxic compound extrusion (MATE) proteins Back     alignment and domain information
>gnl|CDD|240545 cd13140, MATE_like_1, Uncharacterized subfamily of the multidrug and toxic compound extrusion (MATE) proteins Back     alignment and domain information
>gnl|CDD|240536 cd13131, MATE_NorM_like, Subfamily of the multidrug and toxic compound extrusion (MATE)-like proteins similar to Vibrio cholerae NorM Back     alignment and domain information
>gnl|CDD|240554 cd13149, MATE_like_2, Uncharacterized subfamily of the multidrug and toxic compound extrusion (MATE) proteins Back     alignment and domain information
>gnl|CDD|240538 cd13133, MATE_like_7, Uncharacterized subfamily of the multidrug and toxic compound extrusion (MATE) proteins Back     alignment and domain information
>gnl|CDD|240548 cd13143, MATE_MepA_like, Subfamily of the multidrug and toxic compound extrusion (MATE)-like proteins similar to Streptococcus aureus MepA Back     alignment and domain information
>gnl|CDD|240552 cd13147, MATE_MJ0709_like, Uncharacterized subfamily of the multidrug and toxic compound extrusion (MATE) proteins, similar to Methanocaldococcus jannaschii MJ0709 Back     alignment and domain information
>gnl|CDD|240547 cd13142, MATE_like_12, Uncharacterized subfamily of the multidrug and toxic compound extrusion (MATE) proteins Back     alignment and domain information
>gnl|CDD|240537 cd13132, MATE_eukaryotic, Eukaryotic members of the multidrug and toxic compound extrusion (MATE) family Back     alignment and domain information
>gnl|CDD|182293 PRK10189, PRK10189, MATE family multidrug exporter; Provisional Back     alignment and domain information
>gnl|CDD|190033 pfam01554, MatE, MatE Back     alignment and domain information
>gnl|CDD|240549 cd13144, MATE_like_4, Uncharacterized subfamily of the multidrug and toxic compound extrusion (MATE) proteins Back     alignment and domain information
>gnl|CDD|240553 cd13148, MATE_like_3, Uncharacterized subfamily of the multidrug and toxic compound extrusion (MATE) proteins Back     alignment and domain information
>gnl|CDD|240550 cd13145, MATE_like_5, Uncharacterized subfamily of the multidrug and toxic compound extrusion (MATE) proteins Back     alignment and domain information
>gnl|CDD|190033 pfam01554, MatE, MatE Back     alignment and domain information
>gnl|CDD|240544 cd13139, MATE_like_14, Uncharacterized subfamily of the multidrug and toxic compound extrusion (MATE) proteins Back     alignment and domain information
>gnl|CDD|240540 cd13135, MATE_like_9, Uncharacterized subfamily of the multidrug and toxic compound extrusion (MATE) proteins Back     alignment and domain information
>gnl|CDD|182413 PRK10367, PRK10367, DNA-damage-inducible SOS response protein; Provisional Back     alignment and domain information
>gnl|CDD|240529 cd13124, MATE_SpoVB_like, Stage V sporulation protein B, also known as Stage III sporulation protein F, and related proteins Back     alignment and domain information
>gnl|CDD|234981 PRK01766, PRK01766, multidrug efflux protein; Reviewed Back     alignment and domain information
>gnl|CDD|166843 PRK00187, PRK00187, multidrug efflux protein NorA; Provisional Back     alignment and domain information
>gnl|CDD|240546 cd13141, MATE_like_13, Uncharacterized subfamily of the multidrug and toxic compound extrusion (MATE) proteins Back     alignment and domain information
>gnl|CDD|240530 cd13125, MATE_like_10, Uncharacterized subfamily of the multidrug and toxic compound extrusion (MATE) proteins Back     alignment and domain information
>gnl|CDD|240551 cd13146, MATE_like_6, Uncharacterized subfamily of the multidrug and toxic compound extrusion (MATE) proteins Back     alignment and domain information
>gnl|CDD|240543 cd13138, MATE_yoeA_like, Subfamily of the multidrug and toxic compound extrusion (MATE)-like proteins similar to Bacillus subtilis yoeA Back     alignment and domain information
>gnl|CDD|240533 cd13128, MATE_Wzx_like, Wzx, a subfamily of the multidrug and toxic compound extrusion (MATE)-like proteins Back     alignment and domain information
>gnl|CDD|240528 cd13123, MATE_MurJ_like, MurJ/MviN, a subfamily of the multidrug and toxic compound extrusion (MATE)-like proteins Back     alignment and domain information
>gnl|CDD|225153 COG2244, RfbX, Membrane protein involved in the export of O-antigen and teichoic acid [General function prediction only] Back     alignment and domain information
>gnl|CDD|240547 cd13142, MATE_like_12, Uncharacterized subfamily of the multidrug and toxic compound extrusion (MATE) proteins Back     alignment and domain information
>gnl|CDD|240533 cd13128, MATE_Wzx_like, Wzx, a subfamily of the multidrug and toxic compound extrusion (MATE)-like proteins Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 597
COG0534455 NorM Na+-driven multidrug efflux pump [Defense mec 100.0
PRK10189478 MATE family multidrug exporter; Provisional 100.0
PRK00187464 multidrug efflux protein NorA; Provisional 100.0
PRK09575453 vmrA multidrug efflux pump VmrA; Reviewed 100.0
PRK10367441 DNA-damage-inducible SOS response protein; Provisi 100.0
PRK01766456 multidrug efflux protein; Reviewed 100.0
TIGR01695502 mviN integral membrane protein MviN. This model re 100.0
TIGR02900488 spore_V_B stage V sporulation protein B. SpoVB is 100.0
TIGR00797342 matE putative efflux protein, MATE family. The MAT 100.0
PRK15099416 O-antigen translocase; Provisional 100.0
KOG1347473 consensus Uncharacterized membrane protein, predic 100.0
COG0728518 MviN Uncharacterized membrane protein, putative vi 100.0
PF03023451 MVIN: MviN-like protein; InterPro: IPR004268 This 100.0
PRK10459492 colanic acid exporter; Provisional 99.96
COG2244480 RfbX Membrane protein involved in the export of O- 99.93
PRK10189 478 MATE family multidrug exporter; Provisional 99.84
COG0534 455 NorM Na+-driven multidrug efflux pump [Defense mec 99.83
PRK00187 464 multidrug efflux protein NorA; Provisional 99.83
PRK10367 441 DNA-damage-inducible SOS response protein; Provisi 99.82
PRK09575 453 vmrA multidrug efflux pump VmrA; Reviewed 99.81
PRK01766 456 multidrug efflux protein; Reviewed 99.81
PF01943273 Polysacc_synt: Polysaccharide biosynthesis protein 99.72
TIGR01695502 mviN integral membrane protein MviN. This model re 99.72
TIGR00797 342 matE putative efflux protein, MATE family. The MAT 99.7
PF03023451 MVIN: MviN-like protein; InterPro: IPR004268 This 99.67
COG0728518 MviN Uncharacterized membrane protein, putative vi 99.63
PF01554162 MatE: MatE; InterPro: IPR002528 Characterised memb 99.62
PF01554162 MatE: MatE; InterPro: IPR002528 Characterised memb 99.61
TIGR02900488 spore_V_B stage V sporulation protein B. SpoVB is 99.6
PRK10459492 colanic acid exporter; Provisional 99.55
PF13440251 Polysacc_synt_3: Polysaccharide biosynthesis prote 99.53
PRK15099416 O-antigen translocase; Provisional 99.43
COG2244480 RfbX Membrane protein involved in the export of O- 99.37
KOG2864530 consensus Nuclear division RFT1 protein [Cell cycl 98.97
PF04506549 Rft-1: Rft protein; InterPro: IPR007594 Asymmetric 98.84
KOG1347 473 consensus Uncharacterized membrane protein, predic 98.83
PF07260345 ANKH: Progressive ankylosis protein (ANKH); InterP 98.51
PF14667146 Polysacc_synt_C: Polysaccharide biosynthesis C-ter 98.5
PF04506549 Rft-1: Rft protein; InterPro: IPR007594 Asymmetric 98.12
PF01943273 Polysacc_synt: Polysaccharide biosynthesis protein 98.09
PF13440251 Polysacc_synt_3: Polysaccharide biosynthesis prote 97.87
COG4267467 Predicted membrane protein [Function unknown] 97.86
PF14667146 Polysacc_synt_C: Polysaccharide biosynthesis C-ter 97.8
KOG2864530 consensus Nuclear division RFT1 protein [Cell cycl 97.76
PF07260 345 ANKH: Progressive ankylosis protein (ANKH); InterP 97.11
COG4267 467 Predicted membrane protein [Function unknown] 88.06
>COG0534 NorM Na+-driven multidrug efflux pump [Defense mechanisms] Back     alignment and domain information 
Probab=100.00  E-value=1.4e-52  Score=448.35  Aligned_cols=429  Identities=28%  Similarity=0.436  Sum_probs=398.2

Q ss_pred             chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccChhhhhhhhhHHHHHHHHHHHhhhhhhhHHHHHHHHHHHhhhhhh
Q 007578          138 QDAKNELIVLTLPAIAGQVIDPLAQLMETAYVGRLGSVELASAGVSISIFNIVSKLFNIPLLSVATSFVAEDIAKNLTKD  217 (597)
Q Consensus       138 ~~~~~~l~~~a~p~~~~~~~~~l~~~vd~~~ig~lG~~~laa~~~a~~i~~~~~~~~~~gl~~~~~~~va~~~~~~~~~~  217 (597)
                      +...|+++++++|++++++++.+++++|++++||+|++++||.++++++..++..+.. |+..+++++++|++|++|   
T Consensus        13 ~~~~k~l~~la~P~i~~~l~~~l~~~vD~~~vG~~~~~alaav~la~~i~~~~~~~~~-gl~~g~~~liaq~~Ga~~---   88 (455)
T COG0534          13 KKILKLLLKLAIPIILGNLLQTLYGLVDTFMVGHLGAEALAAVGLANPIFFLIIAIFI-GLGTGTTVLVAQAIGAGD---   88 (455)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHH-HHHHhHHHHHHHHHcCCc---
Confidence            3468999999999999999999999999999999999999999999999999986544 899999999999999988   


Q ss_pred             hhcccCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHchHHHHhhcCCCCcccchHHHHHHHHHHHhhhHHHH
Q 007578          218 LAAGLEGNGKPPNGTTERKQLSSVSTALLLAVGIGIFEAAALSLASGPFLNLMGVPSASAMHGPAKKFLMLRALGSPAFV  297 (597)
Q Consensus       218 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~i~~~l~~~~~~~~~~~a~~~l~~~~~~~~~~~  297 (597)
                                      +++.++..++++++.++++++.+++.+.+.++++.+++.+++  +.+.+..|+++..++.|+..
T Consensus        89 ----------------~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ll~~l~~~~~--v~~~a~~Yl~i~~~~~~~~~  150 (455)
T COG0534          89 ----------------RKKAKRVLGQGLLLALLLGLLLAILLLFFAEPLLRLLGAPAE--VLELAAEYLRIILLGAPFAL  150 (455)
T ss_pred             ----------------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHh--HHHHHHHHHHHHHHHHHHHH
Confidence                            899999999999999999999999999999999999998776  99999999999999999999


Q ss_pred             HHHHHHHHHhhcCCChhHHHHHHHHHHHHHHHHHHHHhh-cC-CChhhHHHHHHHHHHHHHHHHHHHHhhccc---c---
Q 007578          298 VSLALQGIFRGFKDTKTPVLCLGIGNLLAVFLFPILIYF-CQ-LGMPGAAISTVVSQYIVAVTMIWFLNKKVV---L---  369 (597)
Q Consensus       298 ~~~~~~~~l~~~~~~~~~~~~~~~~~v~~i~l~~lli~~-~~-~Gv~Gaa~at~is~~~~~~~~~~~l~~~~~---~---  369 (597)
                      ++..+.+++|+.||+++|++..++++++|+++||+|+++ ++ +|+.|+|+||++++++..++++++++++++   .   
T Consensus       151 ~~~~~~~~lr~~G~~~~~m~~~~~~~~lNivln~llI~g~~g~lGv~GAA~AT~ia~~~~~~~~~~~~~~~~~~~~~~~~  230 (455)
T COG0534         151 LSFVLSGILRGLGDTKTPMYILLLGNLLNIVLNYLLIFGLFGGLGVAGAALATVIARWIGALLLLIYLLRKKRLLSLFKK  230 (455)
T ss_pred             HHHHHHHHHHhcCCCchhHHHHHHHHHHHHHhhHHHHHhccccccchhHHHHHHHHHHHHHHHHHHHHHhcchhhhhhhh
Confidence            999999999999999999999999999999999999999 57 999999999999999999999999977653   1   


Q ss_pred             CCCCcchhhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhhChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 007578          370 MPPKMGALQFGDYVKSGGFLLGRTLAVLITMTLGTSMAARQGSDAMAAHQICMQVWLAVSLLTDALAASGQALIASYVSK  449 (597)
Q Consensus       370 ~~~~~~~~~~~~~lk~~~p~~~~~l~~~i~~~i~~~l~~~~g~~~laa~~i~~~i~~l~~~~~~~l~~a~~p~vs~~~g~  449 (597)
                      ...+++++.+|++++.|.|..++.+.+...+.+.+.+++++|++.+|+|+++.++.++.++++.|++++..+++++++|+
T Consensus       231 ~~~~~~~~~~~~i~~lG~p~~~~~~~~~~~~~~~~~~~~~~G~~~lAa~~i~~~i~~~~~~~~~gi~~a~~~lvG~~~Ga  310 (455)
T COG0534         231 KLLKPDRKLLKEILRLGLPIFLESLSESLGFLLLTLFVARLGTVALAAYGIALRIASFIFMPPFGIAQAVTILVGQNLGA  310 (455)
T ss_pred             hccCCCHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence            12356778899999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccCCChHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhcCchH
Q 007578          450 GDFKTVREITNFVLKIGVLTGVSLATILGLSFGSLAPLFTKDPKVLGIVGTGVLFVSASQPINALAFIFDGLHYGVSDFR  529 (597)
Q Consensus       450 ~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~l~~lf~~d~~v~~~~~~~l~i~~~~~~~~~~~~i~~~~l~~~g~~~  529 (597)
                      +|++++++..+.++++++.+++..+++++++++++.++|++|+|+.+.+..++++.++..++++++.+..++++|.||++
T Consensus       311 ~~~~~a~~~~~~~~~~~~~~~~~~~~i~~~f~~~i~~lF~~~~~v~~~~~~~l~i~~~~~~~~~~~~v~~g~lrg~g~~~  390 (455)
T COG0534         311 GNYKRARRAARLALKLSLLIALLIALLLLLFREPIISLFTTDPEVIALAVILLLIAALFQPFDGIQFVLSGVLRGAGDAK  390 (455)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHH-HHHHHHHHHhcCC-CChhHHHHHHHHHHHHHHHHHHHHHHhcCCCceecccc
Q 007578          530 YAACSMMLVG-AMSSTFLLYAPRA-TGLPGVWAGLTLFMGLRTVAGFVRLLSKSGPWWFLHTD  590 (597)
Q Consensus       530 ~~~~~~~~~~-l~~~~~~~~l~~~-~Gi~Gv~~a~~i~~~i~~~~~~~~l~~~~~~w~~~~~~  590 (597)
                      .+++.+++.. .+.+++.+++... +|..|+|+++.++.++..++..+++  ++++|++...+
T Consensus       391 ~~~~~~~~~~~~~~lp~~~~l~~~~~g~~Gvw~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~  451 (455)
T COG0534         391 IPFIISLLSYWGFRLPLAYLLGFFFLGLAGVWIGFPLSLILRAILLLLRL--RRGRWRRKAVA  451 (455)
T ss_pred             HHHHHHHHHHHHHHHhHHHHHhhhcccchHHHHHHHHHHHHHHHHHHHHH--HHhhhhhhhhh
Confidence            9998777754 3446666666666 9999999999999999999888886  55566654433

>PRK10189 MATE family multidrug exporter; Provisional Back     alignment and domain information
>PRK00187 multidrug efflux protein NorA; Provisional Back     alignment and domain information
>PRK09575 vmrA multidrug efflux pump VmrA; Reviewed Back     alignment and domain information
>PRK10367 DNA-damage-inducible SOS response protein; Provisional Back     alignment and domain information
>PRK01766 multidrug efflux protein; Reviewed Back     alignment and domain information
>TIGR01695 mviN integral membrane protein MviN Back     alignment and domain information
>TIGR02900 spore_V_B stage V sporulation protein B Back     alignment and domain information
>TIGR00797 matE putative efflux protein, MATE family Back     alignment and domain information
>PRK15099 O-antigen translocase; Provisional Back     alignment and domain information
>KOG1347 consensus Uncharacterized membrane protein, predicted efflux pump [General function prediction only] Back     alignment and domain information
>COG0728 MviN Uncharacterized membrane protein, putative virulence factor [General function prediction only] Back     alignment and domain information
>PF03023 MVIN: MviN-like protein; InterPro: IPR004268 This entry represents MviN, a family of integral membrane proteins predicted to have ten or more transmembrane regions Back     alignment and domain information
>PRK10459 colanic acid exporter; Provisional Back     alignment and domain information
>COG2244 RfbX Membrane protein involved in the export of O-antigen and teichoic acid [General function prediction only] Back     alignment and domain information
>PRK10189 MATE family multidrug exporter; Provisional Back     alignment and domain information
>COG0534 NorM Na+-driven multidrug efflux pump [Defense mechanisms] Back     alignment and domain information
>PRK00187 multidrug efflux protein NorA; Provisional Back     alignment and domain information
>PRK10367 DNA-damage-inducible SOS response protein; Provisional Back     alignment and domain information
>PRK09575 vmrA multidrug efflux pump VmrA; Reviewed Back     alignment and domain information
>PRK01766 multidrug efflux protein; Reviewed Back     alignment and domain information
>PF01943 Polysacc_synt: Polysaccharide biosynthesis protein; InterPro: IPR002797 Members of this family are integral membrane proteins [], and many are implicated in the production of polysaccharide Back     alignment and domain information
>TIGR01695 mviN integral membrane protein MviN Back     alignment and domain information
>TIGR00797 matE putative efflux protein, MATE family Back     alignment and domain information
>PF03023 MVIN: MviN-like protein; InterPro: IPR004268 This entry represents MviN, a family of integral membrane proteins predicted to have ten or more transmembrane regions Back     alignment and domain information
>COG0728 MviN Uncharacterized membrane protein, putative virulence factor [General function prediction only] Back     alignment and domain information
>PF01554 MatE: MatE; InterPro: IPR002528 Characterised members of the Multi Antimicrobial Extrusion (MATE) family function as drug/sodium antiporters Back     alignment and domain information
>PF01554 MatE: MatE; InterPro: IPR002528 Characterised members of the Multi Antimicrobial Extrusion (MATE) family function as drug/sodium antiporters Back     alignment and domain information
>TIGR02900 spore_V_B stage V sporulation protein B Back     alignment and domain information
>PRK10459 colanic acid exporter; Provisional Back     alignment and domain information
>PF13440 Polysacc_synt_3: Polysaccharide biosynthesis protein Back     alignment and domain information
>PRK15099 O-antigen translocase; Provisional Back     alignment and domain information
>COG2244 RfbX Membrane protein involved in the export of O-antigen and teichoic acid [General function prediction only] Back     alignment and domain information
>KOG2864 consensus Nuclear division RFT1 protein [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>PF04506 Rft-1: Rft protein; InterPro: IPR007594 Asymmetric lipid distribution is a fundamental characteristic of biological lipid bilayers, one such axample is the translocation of the Man5GlcNAc2-PP-Dol intermediate from the cytosolic side of the ER membrane to the lumen before the completion of the biosynthesis of Glc3Man9GlcNAc2-PP-Dol [] Back     alignment and domain information
>KOG1347 consensus Uncharacterized membrane protein, predicted efflux pump [General function prediction only] Back     alignment and domain information
>PF07260 ANKH: Progressive ankylosis protein (ANKH); InterPro: IPR009887 This family consists of several progressive ankylosis protein (ANK or ANKH) sequences Back     alignment and domain information
>PF14667 Polysacc_synt_C: Polysaccharide biosynthesis C-terminal domain Back     alignment and domain information
>PF04506 Rft-1: Rft protein; InterPro: IPR007594 Asymmetric lipid distribution is a fundamental characteristic of biological lipid bilayers, one such axample is the translocation of the Man5GlcNAc2-PP-Dol intermediate from the cytosolic side of the ER membrane to the lumen before the completion of the biosynthesis of Glc3Man9GlcNAc2-PP-Dol [] Back     alignment and domain information
>PF01943 Polysacc_synt: Polysaccharide biosynthesis protein; InterPro: IPR002797 Members of this family are integral membrane proteins [], and many are implicated in the production of polysaccharide Back     alignment and domain information
>PF13440 Polysacc_synt_3: Polysaccharide biosynthesis protein Back     alignment and domain information
>COG4267 Predicted membrane protein [Function unknown] Back     alignment and domain information
>PF14667 Polysacc_synt_C: Polysaccharide biosynthesis C-terminal domain Back     alignment and domain information
>KOG2864 consensus Nuclear division RFT1 protein [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>PF07260 ANKH: Progressive ankylosis protein (ANKH); InterPro: IPR009887 This family consists of several progressive ankylosis protein (ANK or ANKH) sequences Back     alignment and domain information
>COG4267 Predicted membrane protein [Function unknown] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query597
3mkt_A460 Multi antimicrobial extrusion protein (Na(+)/drug 2e-33
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-08
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-06
>3mkt_A Multi antimicrobial extrusion protein (Na(+)/drug antiporter) MATE-like MDR efflux...; multidrug transporter, cation-bound, transport protein; 3.65A {Vibrio cholerae} PDB: 3mku_A Length = 460 Back     alignment and structure
 Score =  132 bits (334), Expect = 2e-33
 Identities = 86/466 (18%), Positives = 166/466 (35%), Gaps = 45/466 (9%)

Query: 134 KSHTQDAKNE---LIVLTLPAIAGQVIDPLAQLMETAYVGRLGSVELASAGVSISIFNIV 190
           ++     K E   LI L  P +   V       ++T   G + ++++A+  ++ SI+   
Sbjct: 1   ENSVHRYKKEASNLIKLATPVLIASVAQTGMGFVDTIMAGGVSAIDMAAVSIAASIWLPS 60

Query: 191 SKLFNIPLLSVATSFVAEDIAKNLTKDLAAGLEGNGKPPNGTTERKQLSSVSTALLLAVG 250
             LF + LL      VA+         +                      V   L+LA+ 
Sbjct: 61  I-LFGVGLLMALVPVVAQLNGAGRQHKIP-------------------FEVHQGLILALL 100

Query: 251 IGIFEAAALSLASGPFLNLMGVPSASAMHGPAKKFLMLRALGSPAFVVSLALQGIFRGFK 310
           + +    A+   +   +  M V    AM      ++       PA+++  AL+    G  
Sbjct: 101 VSVP-IIAVLFQTQFIIRFMDVE--EAMATKTVGYMHAVIFAVPAYLLFQALRSFTDGMS 157

Query: 311 DTKTPVLCLGIGNLLAVFLFPILIY----FCQLGMPGAAISTVVSQYIVAVTMIWFLNKK 366
            TK  ++   IG LL + L  I +Y      +LG  G  ++T +  +I+ + +++++   
Sbjct: 158 LTKPAMVIGFIGLLLNIPLNWIFVYGKFGAPELGGVGCGVATAIVYWIMLLLLLFYIVTS 217

Query: 367 VVLMPPKMGALQFGDYVKSGGFLLGRTLAVLITM-------TLGTSMAARQGSDAMAAHQ 419
             L   K+         K    L      V   +        +   + A  GS  +AAHQ
Sbjct: 218 KRLAHVKVFETFHKPQPKELIRLFRLGFPVAAALFFEVTLFAVVALLVAPLGSTVVAAHQ 277

Query: 420 ICMQVWLAVSLLTDALAASGQALIASYVSKGDFKTVREITNFVLKIGVLTGVSLATILGL 479
           + +     V +   ++ A+    +   + + D K      N  L  G+ T    A +  L
Sbjct: 278 VALNFSSLVFMFPMSIGAAVSIRVGHKLGEQDTKGAAIAANVGLMTGLATACITALLTVL 337

Query: 480 SFGSLAPLFTKDPKVLGIVGTGVLFVSASQPINALAFIFDGLHYGVSDFRYAACSMML-- 537
               +A L+T++  V+ +    +LF +  Q ++A+  +  G   G  D         +  
Sbjct: 338 FREQIALLYTENQVVVALAMQLLLFAAIYQCMDAVQVVAAGSLRGYKDMTAIFHRTFISY 397

Query: 538 ------VGAMSSTFLLYAPRATGLPGVWAGLTLFMGLRTVAGFVRL 577
                  G +         +  G  G W G  + +    +    RL
Sbjct: 398 WVLGLPTGYILGMTNWLTEQPLGAKGFWLGFIIGLSAAALMLGQRL 443
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query597
3mkt_A460 Multi antimicrobial extrusion protein (Na(+)/drug 100.0
3mkt_A460 Multi antimicrobial extrusion protein (Na(+)/drug 99.75
1pw4_A451 Glycerol-3-phosphate transporter; transmembrane, i 89.96
>3mkt_A Multi antimicrobial extrusion protein (Na(+)/drug antiporter) MATE-like MDR efflux...; multidrug transporter, cation-bound, transport protein; 3.65A {Vibrio cholerae} PDB: 3mku_A Back     alignment and structure
Probab=100.00  E-value=1.7e-44  Score=388.63  Aligned_cols=417  Identities=19%  Similarity=0.226  Sum_probs=380.2

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccChhhhhhhhhHHHHHHHHHHHhhhhhhhHHHHHHHHHHHhhhhhhh
Q 007578          139 DAKNELIVLTLPAIAGQVIDPLAQLMETAYVGRLGSVELASAGVSISIFNIVSKLFNIPLLSVATSFVAEDIAKNLTKDL  218 (597)
Q Consensus       139 ~~~~~l~~~a~p~~~~~~~~~l~~~vd~~~ig~lG~~~laa~~~a~~i~~~~~~~~~~gl~~~~~~~va~~~~~~~~~~~  218 (597)
                      +..|++++.++|.++++++..+++++|+.+++|+|++++|+++++.++...... +..|+..+..+.+++++|+++    
T Consensus         9 ~~~k~~~~~~~p~~~~~~~~~~~~~v~~~~~~~lg~~~~~~~~~~~~i~~~~~~-~~~g~~~~~~~~is~~~g~~~----   83 (460)
T 3mkt_A            9 KEASNLIKLATPVLIASVAQTGMGFVDTIMAGGVSAIDMAAVSIAASIWLPSIL-FGVGLLMALVPVVAQLNGAGR----   83 (460)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHTTTTSSHHHHHHHHHHHHHH-HHHHHHHHHGGGCTTTTSSSS----
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHcCCC----
Confidence            458999999999999999999999999999999999999999999999776654 456888899999999888776    


Q ss_pred             hcccCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHchHHHHhhcCCCCcccchHHHHHHHHHHHhhhHHHHH
Q 007578          219 AAGLEGNGKPPNGTTERKQLSSVSTALLLAVGIGIFEAAALSLASGPFLNLMGVPSASAMHGPAKKFLMLRALGSPAFVV  298 (597)
Q Consensus       219 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~i~~~l~~~~~~~~~~~a~~~l~~~~~~~~~~~~  298 (597)
                                     +++.++.+++++.+.++++++.+++ +++++++..+++.+++  ..+.+..|++++.++.++..+
T Consensus        84 ---------------~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~~~~~--~~~~~~~~l~i~~~~~~~~~~  145 (460)
T 3mkt_A           84 ---------------QHKIPFEVHQGLILALLVSVPIIAV-LFQTQFIIRFMDVEEA--MATKTVGYMHAVIFAVPAYLL  145 (460)
T ss_dssp             ---------------TTTHHHHHHHHHHHHHHHHHHHHHH-HHHHHTTCSSCSSTTH--HHHHHHHHHTTGGGHHHHHHH
T ss_pred             ---------------hhHHHHHHHHHHHHHHHHHHHHHHH-HHhHHHHHHHhCCCHH--HHHHHHHHHHHHHHHHHHHHH
Confidence                           6788889999999999999987765 7788999998877655  788999999999999999999


Q ss_pred             HHHHHHHHhhcCCChhHHHHHHHHHHHHHHHHHHHHhh-c---CCChhhHHHHHHHHHHHHHHHHHHHHhhccccCC---
Q 007578          299 SLALQGIFRGFKDTKTPVLCLGIGNLLAVFLFPILIYF-C---QLGMPGAAISTVVSQYIVAVTMIWFLNKKVVLMP---  371 (597)
Q Consensus       299 ~~~~~~~l~~~~~~~~~~~~~~~~~v~~i~l~~lli~~-~---~~Gv~Gaa~at~is~~~~~~~~~~~l~~~~~~~~---  371 (597)
                      ...+++++|+.+|++.+++.+++++++|+++++++++. +   ++|+.|+++|+++++++..++.+++++++++..+   
T Consensus       146 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~l~~~li~~~~~~p~~g~~g~a~a~~i~~~~~~~~~~~~~~~~~~~~~~~~  225 (460)
T 3mkt_A          146 FQALRSFTDGMSLTKPAMVIGFIGLLLNIPLNWIFVYGKFGAPELGGVGCGVATAIVYWIMLLLLLFYIVTSKRLAHVKV  225 (460)
T ss_dssp             HHHHTTTTCTTSCCTTTHHHHHHHHHHHHHHHHHHHSCCTTCCCCHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCCCCCC
T ss_pred             HHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHcCCCCCcccchhhHHHHHHHHHHHHHHHHHHHHHhCcchhhhhh
Confidence            99999999999999999999999999999999999976 3   7999999999999999999999888876543221   


Q ss_pred             ----CCcchhhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhhChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 007578          372 ----PKMGALQFGDYVKSGGFLLGRTLAVLITMTLGTSMAARQGSDAMAAHQICMQVWLAVSLLTDALAASGQALIASYV  447 (597)
Q Consensus       372 ----~~~~~~~~~~~lk~~~p~~~~~l~~~i~~~i~~~l~~~~g~~~laa~~i~~~i~~l~~~~~~~l~~a~~p~vs~~~  447 (597)
                          .+.++..+|++++++.|.+++.+...+.+.+++.+++++|++++|+|+++.++.++..++..+++++..|.+++++
T Consensus       226 ~~~~~~~~~~~~~~~l~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~va~~~i~~~i~~~~~~~~~~~~~a~~p~i~~~~  305 (460)
T 3mkt_A          226 FETFHKPQPKELIRLFRLGFPVAAALFFEVTLFAVVALLVAPLGSTVVAAHQVALNFSSLVFMFPMSIGAAVSIRVGHKL  305 (460)
T ss_dssp             SCCCCSSTTSSTTTSHHHHHHHHHHHHHHHHHHHHHHHHTCTTSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hhcccccCHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                2445678899999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccCCChHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhcCc
Q 007578          448 SKGDFKTVREITNFVLKIGVLTGVSLATILGLSFGSLAPLFTKDPKVLGIVGTGVLFVSASQPINALAFIFDGLHYGVSD  527 (597)
Q Consensus       448 g~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~l~~lf~~d~~v~~~~~~~l~i~~~~~~~~~~~~i~~~~l~~~g~  527 (597)
                      |++|++++++..++++++.+.+++++++++.++++++..+|++|+++.+.+..++++++++.++++++.+..+++++.||
T Consensus       306 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~g~  385 (460)
T 3mkt_A          306 GEQDTKGAAIAANVGLMTGLATACITALLTVLFREQIALLYTENQVVVALAMQLLLFAAIYQCMDAVQVVAAGSLRGYKD  385 (460)
T ss_dssp             HSSCCCTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCCSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGST
T ss_pred             cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCc
Confidence            99999999999999999999999999999999999999999999998999999999999999999999999999999999


Q ss_pred             hHHHHHHHHHHH-HHHHHHHHHhcCC-------CChhHHHHHHHHHHHHHHHHHHHHHH
Q 007578          528 FRYAACSMMLVG-AMSSTFLLYAPRA-------TGLPGVWAGLTLFMGLRTVAGFVRLL  578 (597)
Q Consensus       528 ~~~~~~~~~~~~-l~~~~~~~~l~~~-------~Gi~Gv~~a~~i~~~i~~~~~~~~l~  578 (597)
                      ++.+++.+++.. ++++++.+++.+.       +|+.|+|+++.+++++..++..++++
T Consensus       386 ~~~~~~~~~~~~~~~~i~l~~~l~~~~~~~~~~~G~~G~~~a~~~~~~~~~~~~~~~~~  444 (460)
T 3mkt_A          386 MTAIFHRTFISYWVLGLPTGYILGMTNWLTEQPLGAKGFWLGFIIGLSAAALMLGQRLY  444 (460)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHTSSCCSSHHHHHHHHHHHHHHHHHHHHHSSSS
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHhhhhccccccCchhHHHHHHHHHHHHHHHHHHHHH
Confidence            999999988876 7777777766655       99999999999999998887766653
>3mkt_A Multi antimicrobial extrusion protein (Na(+)/drug antiporter) MATE-like MDR efflux...; multidrug transporter, cation-bound, transport protein; 3.65A {Vibrio cholerae} PDB: 3mku_A Back     alignment and structure
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1 Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00