Query 007579
Match_columns 597
No_of_seqs 220 out of 699
Neff 3.1
Searched_HMMs 46136
Date Thu Mar 28 12:32:08 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007579.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/007579hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 smart00338 BRLZ basic region l 99.4 3E-12 6.5E-17 103.0 9.2 63 431-493 2-64 (65)
2 PF00170 bZIP_1: bZIP transcri 99.2 4.5E-11 9.8E-16 96.1 9.3 61 432-492 3-63 (64)
3 KOG4343 bZIP transcription fac 99.0 3.9E-10 8.4E-15 122.4 7.3 64 434-497 281-344 (655)
4 PF07716 bZIP_2: Basic region 99.0 1.2E-09 2.6E-14 85.8 8.1 53 431-484 2-54 (54)
5 KOG4005 Transcription factor X 99.0 1.9E-09 4E-14 108.3 10.9 75 431-505 66-140 (292)
6 KOG3584 cAMP response element 98.8 6.8E-09 1.5E-13 106.5 6.7 52 433-484 290-341 (348)
7 KOG0709 CREB/ATF family transc 98.8 8.4E-09 1.8E-13 110.8 6.5 64 431-494 248-311 (472)
8 PF03131 bZIP_Maf: bZIP Maf tr 98.0 8.6E-08 1.9E-12 82.7 -6.8 62 431-492 27-88 (92)
9 KOG0837 Transcriptional activa 97.8 7.6E-05 1.7E-09 76.4 8.4 50 434-483 205-255 (279)
10 KOG4571 Activating transcripti 97.3 0.0015 3.2E-08 67.9 10.3 54 431-484 223-277 (294)
11 KOG4196 bZIP transcription fac 96.9 0.0073 1.6E-07 56.9 9.7 51 432-482 51-101 (135)
12 PF11559 ADIP: Afadin- and alp 96.7 0.081 1.8E-06 48.9 14.7 80 449-528 46-125 (151)
13 KOG3119 Basic region leucine z 96.6 0.011 2.3E-07 60.4 9.5 55 431-485 191-245 (269)
14 PF06005 DUF904: Protein of un 96.0 0.16 3.5E-06 43.3 11.5 51 455-505 4-54 (72)
15 PF06156 DUF972: Protein of un 95.8 0.044 9.6E-07 49.7 7.9 50 455-504 8-57 (107)
16 PRK13169 DNA replication intia 95.6 0.047 1E-06 49.9 7.6 49 456-504 9-57 (110)
17 KOG4005 Transcription factor X 95.5 0.13 2.8E-06 53.1 11.0 84 430-513 69-155 (292)
18 KOG3863 bZIP transcription fac 95.4 0.031 6.8E-07 63.1 6.7 63 434-503 490-552 (604)
19 COG1579 Zn-ribbon protein, pos 95.2 0.92 2E-05 46.5 15.9 75 433-507 30-113 (239)
20 PRK10884 SH3 domain-containing 95.0 0.27 5.9E-06 49.0 11.3 33 484-516 133-165 (206)
21 PF14197 Cep57_CLD_2: Centroso 95.0 0.4 8.8E-06 40.6 10.5 63 459-521 2-64 (69)
22 PRK15422 septal ring assembly 94.7 0.7 1.5E-05 40.6 11.4 51 455-505 4-54 (79)
23 PF11559 ADIP: Afadin- and alp 94.6 2.1 4.6E-05 39.6 15.3 69 434-502 45-113 (151)
24 PF10473 CENP-F_leu_zip: Leuci 94.5 1.8 3.8E-05 41.3 14.7 73 434-506 31-103 (140)
25 PF08614 ATG16: Autophagy prot 94.5 0.74 1.6E-05 44.6 12.5 70 433-502 115-184 (194)
26 PRK11637 AmiB activator; Provi 94.1 1.3 2.9E-05 47.4 14.7 86 432-517 168-253 (428)
27 PRK11637 AmiB activator; Provi 94.0 0.95 2.1E-05 48.4 13.3 46 457-502 70-115 (428)
28 PF10186 Atg14: UV radiation r 93.8 2.4 5.3E-05 41.8 15.0 50 450-499 58-107 (302)
29 PF14197 Cep57_CLD_2: Centroso 93.8 0.63 1.4E-05 39.4 9.3 62 466-527 2-63 (69)
30 PF14662 CCDC155: Coiled-coil 93.8 0.58 1.3E-05 46.8 10.4 73 456-532 9-81 (193)
31 PF10473 CENP-F_leu_zip: Leuci 93.7 3.7 8.1E-05 39.2 15.3 76 454-529 23-98 (140)
32 PF04111 APG6: Autophagy prote 93.6 2 4.4E-05 45.1 14.6 81 446-526 55-135 (314)
33 COG3074 Uncharacterized protei 93.5 1.6 3.5E-05 38.0 11.2 49 456-504 5-53 (79)
34 COG2433 Uncharacterized conser 93.4 0.63 1.4E-05 53.2 11.2 43 456-498 423-465 (652)
35 PF10481 CENP-F_N: Cenp-F N-te 93.4 1.8 3.9E-05 45.7 13.6 73 455-527 53-125 (307)
36 TIGR02449 conserved hypothetic 93.4 0.64 1.4E-05 39.4 8.5 46 457-502 9-54 (65)
37 PF14662 CCDC155: Coiled-coil 93.3 1.6 3.4E-05 43.8 12.5 47 458-504 98-144 (193)
38 PRK09039 hypothetical protein; 93.2 2.8 6E-05 44.5 15.0 36 464-499 125-160 (343)
39 PF12325 TMF_TATA_bd: TATA ele 92.7 2.6 5.6E-05 39.2 12.3 38 458-495 26-63 (120)
40 PF10146 zf-C4H2: Zinc finger- 92.6 4.6 0.0001 41.2 15.0 80 450-529 27-107 (230)
41 TIGR02894 DNA_bind_RsfA transc 92.6 1.4 3.1E-05 43.0 10.9 51 455-505 87-140 (161)
42 PF07888 CALCOCO1: Calcium bin 92.6 3.4 7.5E-05 46.9 15.3 66 434-499 150-215 (546)
43 PF15070 GOLGA2L5: Putative go 92.6 2.9 6.3E-05 47.9 15.0 69 435-503 102-194 (617)
44 PF05911 DUF869: Plant protein 92.6 1.5 3.3E-05 51.4 13.0 55 479-533 137-213 (769)
45 KOG1029 Endocytic adaptor prot 92.5 1.3 2.9E-05 52.0 12.2 14 124-137 114-127 (1118)
46 PRK10884 SH3 domain-containing 92.4 2.3 5.1E-05 42.5 12.5 56 455-510 118-173 (206)
47 PF13747 DUF4164: Domain of un 92.4 3.1 6.7E-05 36.7 11.8 69 434-502 11-79 (89)
48 PF10805 DUF2730: Protein of u 92.4 1.2 2.6E-05 40.0 9.4 53 456-508 43-97 (106)
49 PF08317 Spc7: Spc7 kinetochor 92.3 4 8.7E-05 42.7 14.6 38 460-497 214-251 (325)
50 PF02403 Seryl_tRNA_N: Seryl-t 92.3 2.6 5.6E-05 36.9 11.3 63 460-529 41-106 (108)
51 TIGR03752 conj_TIGR03752 integ 92.2 0.74 1.6E-05 51.2 9.5 48 458-505 76-124 (472)
52 PF05266 DUF724: Protein of un 92.0 5.8 0.00013 39.3 14.5 63 431-493 86-148 (190)
53 COG4942 Membrane-bound metallo 92.0 2.9 6.2E-05 46.2 13.5 73 434-506 38-110 (420)
54 PF07989 Microtub_assoc: Micro 91.8 2.3 4.9E-05 36.6 10.0 58 457-514 2-67 (75)
55 PF08614 ATG16: Autophagy prot 91.6 3.6 7.9E-05 39.9 12.5 65 458-522 126-191 (194)
56 PF04102 SlyX: SlyX; InterPro 91.6 0.84 1.8E-05 38.2 7.0 49 455-503 4-52 (69)
57 PF09726 Macoilin: Transmembra 91.5 3.7 8E-05 47.7 14.5 42 457-498 540-581 (697)
58 PF03962 Mnd1: Mnd1 family; I 91.5 3.7 7.9E-05 40.4 12.5 79 456-534 70-158 (188)
59 PRK09039 hypothetical protein; 91.5 3.8 8.2E-05 43.5 13.5 44 460-503 135-178 (343)
60 COG4467 Regulator of replicati 91.4 0.65 1.4E-05 43.0 6.7 46 456-501 9-54 (114)
61 PF11932 DUF3450: Protein of u 91.4 7.8 0.00017 38.9 14.9 43 460-502 54-96 (251)
62 KOG0243 Kinesin-like protein [ 91.4 2.5 5.4E-05 51.0 13.1 84 439-522 415-508 (1041)
63 PRK13729 conjugal transfer pil 91.3 0.91 2E-05 50.6 9.0 44 456-499 77-120 (475)
64 PF10224 DUF2205: Predicted co 91.2 1.3 2.8E-05 38.8 8.1 48 458-505 19-66 (80)
65 PRK00295 hypothetical protein; 91.1 1.5 3.2E-05 36.9 8.0 47 456-502 6-52 (68)
66 TIGR02449 conserved hypothetic 91.1 1.7 3.7E-05 36.9 8.4 46 457-502 2-47 (65)
67 PF12711 Kinesin-relat_1: Kine 90.8 3.3 7.3E-05 36.8 10.3 59 466-526 21-85 (86)
68 PRK00736 hypothetical protein; 90.7 1.5 3.2E-05 36.9 7.7 47 455-501 5-51 (68)
69 PRK04325 hypothetical protein; 90.7 1.4 3.1E-05 37.6 7.7 45 456-500 10-54 (74)
70 PF07888 CALCOCO1: Calcium bin 90.7 6.5 0.00014 44.8 14.9 51 456-506 186-236 (546)
71 PRK02793 phi X174 lysis protei 90.7 1.4 3.1E-05 37.4 7.7 47 455-501 8-54 (72)
72 PF15030 DUF4527: Protein of u 90.6 5.5 0.00012 41.7 13.1 90 431-520 12-102 (277)
73 COG1579 Zn-ribbon protein, pos 90.5 12 0.00025 38.8 15.4 78 428-505 52-139 (239)
74 PRK04863 mukB cell division pr 90.4 8.2 0.00018 48.5 16.8 94 434-527 321-427 (1486)
75 PLN02678 seryl-tRNA synthetase 90.4 4.4 9.6E-05 44.8 13.2 104 431-538 13-119 (448)
76 PF15290 Syntaphilin: Golgi-lo 90.4 2.2 4.8E-05 45.1 10.2 62 457-532 77-138 (305)
77 PF06005 DUF904: Protein of un 90.3 5.2 0.00011 34.3 10.8 46 457-502 13-58 (72)
78 COG3074 Uncharacterized protei 90.3 4 8.8E-05 35.7 10.0 47 456-502 19-65 (79)
79 PRK05431 seryl-tRNA synthetase 90.2 5.9 0.00013 43.2 13.8 100 432-536 10-112 (425)
80 PF13851 GAS: Growth-arrest sp 90.2 21 0.00045 35.5 16.4 56 434-489 72-127 (201)
81 PRK02119 hypothetical protein; 90.0 1.7 3.7E-05 37.0 7.6 45 455-499 9-53 (73)
82 PF05266 DUF724: Protein of un 89.8 5.6 0.00012 39.4 12.1 20 465-484 127-146 (190)
83 PF11932 DUF3450: Protein of u 89.8 13 0.00028 37.3 14.9 49 457-505 44-92 (251)
84 PF04111 APG6: Autophagy prote 89.7 4 8.7E-05 42.9 11.7 52 454-505 42-93 (314)
85 PHA02562 46 endonuclease subun 89.7 7.9 0.00017 42.1 14.3 31 460-490 363-393 (562)
86 KOG0239 Kinesin (KAR3 subfamil 89.7 4.6 9.9E-05 46.8 13.0 72 457-528 243-317 (670)
87 PRK04406 hypothetical protein; 89.7 1.9 4E-05 37.1 7.6 40 456-495 12-51 (75)
88 PF09726 Macoilin: Transmembra 89.6 8.3 0.00018 45.0 15.1 83 444-526 477-581 (697)
89 COG4026 Uncharacterized protei 89.6 3.4 7.4E-05 42.9 10.7 69 455-530 135-203 (290)
90 PRK15422 septal ring assembly 89.6 4.5 9.8E-05 35.7 9.9 46 457-502 20-65 (79)
91 KOG0982 Centrosomal protein Nu 89.4 5.1 0.00011 44.7 12.5 78 454-531 296-394 (502)
92 PF08232 Striatin: Striatin fa 89.4 2.6 5.6E-05 39.5 9.0 62 468-529 3-64 (134)
93 PF08172 CASP_C: CASP C termin 89.2 3.8 8.1E-05 42.1 10.8 38 489-526 85-122 (248)
94 PF00038 Filament: Intermediat 89.2 17 0.00037 36.9 15.4 64 464-527 211-278 (312)
95 KOG0995 Centromere-associated 89.0 6.4 0.00014 45.0 13.2 46 454-499 279-324 (581)
96 PF10481 CENP-F_N: Cenp-F N-te 89.0 8 0.00017 41.1 13.0 106 414-527 6-118 (307)
97 PF12325 TMF_TATA_bd: TATA ele 89.0 7.6 0.00017 36.2 11.6 48 458-505 33-83 (120)
98 PF10186 Atg14: UV radiation r 88.6 19 0.00041 35.6 14.9 41 447-487 62-102 (302)
99 PF02183 HALZ: Homeobox associ 88.5 1.4 3E-05 34.8 5.5 39 466-504 2-40 (45)
100 PRK00846 hypothetical protein; 88.4 2.7 5.9E-05 36.7 7.8 48 455-502 13-60 (77)
101 KOG0996 Structural maintenance 88.1 15 0.00033 45.2 16.1 89 442-532 806-899 (1293)
102 KOG1414 Transcriptional activa 88.0 0.025 5.4E-07 60.5 -5.8 54 431-484 151-208 (395)
103 KOG0971 Microtubule-associated 87.9 8.3 0.00018 46.5 13.5 54 436-489 282-352 (1243)
104 PF05837 CENP-H: Centromere pr 87.9 3.8 8.2E-05 36.9 8.7 50 462-511 3-52 (106)
105 PF02403 Seryl_tRNA_N: Seryl-t 87.9 11 0.00023 33.1 11.4 13 441-453 9-21 (108)
106 PF08317 Spc7: Spc7 kinetochor 87.8 23 0.0005 37.1 15.7 6 264-269 16-21 (325)
107 PF12718 Tropomyosin_1: Tropom 87.6 9.7 0.00021 36.0 11.6 14 494-507 77-90 (143)
108 PF10211 Ax_dynein_light: Axon 87.6 10 0.00022 37.2 12.2 37 458-494 123-159 (189)
109 KOG0977 Nuclear envelope prote 87.6 13 0.00027 42.6 14.4 61 444-504 130-190 (546)
110 TIGR03752 conj_TIGR03752 integ 87.5 4.6 9.9E-05 45.3 10.8 33 470-502 67-99 (472)
111 KOG0980 Actin-binding protein 87.4 14 0.0003 44.5 14.9 68 432-499 387-454 (980)
112 PF13851 GAS: Growth-arrest sp 87.1 24 0.00052 35.1 14.6 58 448-505 79-136 (201)
113 PF06428 Sec2p: GDP/GTP exchan 87.1 0.71 1.5E-05 41.7 3.7 78 455-534 8-88 (100)
114 KOG1962 B-cell receptor-associ 86.9 8 0.00017 39.5 11.3 62 467-528 149-210 (216)
115 PF05700 BCAS2: Breast carcino 86.9 11 0.00023 37.7 12.1 78 455-532 136-217 (221)
116 PF04156 IncA: IncA protein; 86.8 10 0.00022 36.1 11.4 65 460-524 86-150 (191)
117 COG2433 Uncharacterized conser 86.7 7.3 0.00016 45.0 12.0 88 438-525 418-509 (652)
118 KOG0288 WD40 repeat protein Ti 86.2 18 0.00038 40.4 14.1 53 433-485 26-78 (459)
119 PF00769 ERM: Ezrin/radixin/mo 86.2 42 0.00091 34.3 16.1 68 458-525 50-117 (246)
120 PLN02320 seryl-tRNA synthetase 86.0 16 0.00034 41.4 14.0 100 432-536 75-176 (502)
121 smart00787 Spc7 Spc7 kinetocho 85.7 24 0.00052 37.4 14.5 31 460-490 209-239 (312)
122 PRK02224 chromosome segregatio 85.6 18 0.00038 42.0 14.6 13 517-529 626-638 (880)
123 PRK12704 phosphodiesterase; Pr 85.6 13 0.00027 41.9 13.1 23 475-497 92-114 (520)
124 PF07106 TBPIP: Tat binding pr 85.3 6.4 0.00014 37.3 9.2 50 455-504 86-137 (169)
125 PF10805 DUF2730: Protein of u 85.3 11 0.00023 34.0 10.1 63 454-516 34-98 (106)
126 KOG0250 DNA repair protein RAD 85.2 16 0.00034 44.6 14.2 11 227-237 70-80 (1074)
127 PHA02562 46 endonuclease subun 85.1 21 0.00045 38.9 14.2 51 453-503 335-385 (562)
128 PF06156 DUF972: Protein of un 85.1 5.7 0.00012 36.3 8.4 44 459-502 5-48 (107)
129 KOG0976 Rho/Rac1-interacting s 85.0 11 0.00025 45.0 12.6 51 459-509 89-139 (1265)
130 KOG0971 Microtubule-associated 84.8 9 0.0002 46.2 11.8 89 443-531 398-510 (1243)
131 PF14817 HAUS5: HAUS augmin-li 84.8 12 0.00025 43.5 12.6 59 456-514 80-138 (632)
132 TIGR03495 phage_LysB phage lys 84.8 13 0.00029 35.4 11.0 76 457-532 28-104 (135)
133 PF04880 NUDE_C: NUDE protein, 84.7 1.4 3.1E-05 43.0 4.7 53 457-513 2-54 (166)
134 KOG0933 Structural maintenance 84.6 16 0.00035 44.5 13.8 72 457-528 789-860 (1174)
135 PF00261 Tropomyosin: Tropomyo 84.6 21 0.00045 35.8 12.9 11 515-525 194-204 (237)
136 TIGR02977 phageshock_pspA phag 84.5 21 0.00046 35.4 12.8 59 454-512 98-156 (219)
137 KOG0977 Nuclear envelope prote 84.5 12 0.00025 42.8 12.2 70 458-527 123-192 (546)
138 TIGR00414 serS seryl-tRNA synt 84.4 27 0.00058 38.2 14.5 70 460-536 42-115 (418)
139 PRK05431 seryl-tRNA synthetase 84.4 13 0.00028 40.6 12.2 46 461-506 41-89 (425)
140 PF00038 Filament: Intermediat 84.3 46 0.00099 33.9 15.4 28 455-482 223-250 (312)
141 PF09304 Cortex-I_coil: Cortex 84.2 26 0.00057 32.6 12.2 49 444-492 26-74 (107)
142 PF04849 HAP1_N: HAP1 N-termin 84.2 7.7 0.00017 41.4 10.1 45 458-502 220-267 (306)
143 PRK13922 rod shape-determining 84.2 14 0.0003 37.3 11.6 43 483-529 69-111 (276)
144 KOG4643 Uncharacterized coiled 84.1 5.1 0.00011 48.4 9.6 79 454-532 263-343 (1195)
145 PF15035 Rootletin: Ciliary ro 84.0 16 0.00034 36.1 11.5 56 455-510 67-122 (182)
146 smart00787 Spc7 Spc7 kinetocho 83.9 36 0.00079 36.1 14.9 7 356-362 125-131 (312)
147 cd07596 BAR_SNX The Bin/Amphip 83.8 38 0.00082 31.7 14.7 19 506-524 188-206 (218)
148 KOG4807 F-actin binding protei 83.8 14 0.00031 41.1 12.1 91 438-528 374-491 (593)
149 PF07106 TBPIP: Tat binding pr 83.6 6.7 0.00015 37.1 8.6 49 457-505 81-131 (169)
150 PF12777 MT: Microtubule-bindi 83.6 5.9 0.00013 41.7 9.0 63 458-520 231-293 (344)
151 cd07666 BAR_SNX7 The Bin/Amphi 83.6 24 0.00051 36.5 13.0 79 435-523 150-230 (243)
152 PF06785 UPF0242: Uncharacteri 83.5 19 0.00042 39.3 12.7 22 485-506 136-157 (401)
153 PF07200 Mod_r: Modifier of ru 83.4 37 0.00081 31.3 14.1 76 412-488 5-81 (150)
154 PRK10698 phage shock protein P 83.4 31 0.00068 34.7 13.6 58 455-512 99-156 (222)
155 PF05667 DUF812: Protein of un 83.3 13 0.00029 42.6 12.2 56 455-510 328-383 (594)
156 PF10168 Nup88: Nuclear pore c 83.2 30 0.00066 40.6 15.2 37 453-489 577-613 (717)
157 COG4026 Uncharacterized protei 82.8 30 0.00064 36.3 13.2 48 458-505 159-206 (290)
158 TIGR01843 type_I_hlyD type I s 82.5 16 0.00034 37.8 11.4 22 462-483 203-224 (423)
159 PRK10803 tol-pal system protei 82.3 7.9 0.00017 39.6 9.1 47 456-502 55-101 (263)
160 KOG0161 Myosin class II heavy 82.2 13 0.00029 47.8 12.6 94 439-532 1644-1737(1930)
161 PF12718 Tropomyosin_1: Tropom 81.9 12 0.00027 35.3 9.6 48 455-502 14-61 (143)
162 PF09730 BicD: Microtubule-ass 81.9 33 0.00071 40.5 14.8 38 465-502 100-140 (717)
163 COG3883 Uncharacterized protei 81.8 29 0.00063 36.6 13.0 56 450-505 33-88 (265)
164 TIGR03185 DNA_S_dndD DNA sulfu 81.6 36 0.00077 38.8 14.7 44 456-499 422-465 (650)
165 KOG1029 Endocytic adaptor prot 81.3 18 0.0004 43.2 12.3 20 113-140 114-133 (1118)
166 PRK13922 rod shape-determining 81.2 9.9 0.00021 38.4 9.3 43 453-499 67-109 (276)
167 KOG1853 LIS1-interacting prote 81.0 29 0.00064 36.9 12.6 53 441-493 77-129 (333)
168 PRK02224 chromosome segregatio 81.0 37 0.00081 39.4 14.9 20 459-478 534-553 (880)
169 PF09325 Vps5: Vps5 C terminal 80.9 49 0.0011 32.0 13.5 81 444-527 138-227 (236)
170 KOG1414 Transcriptional activa 80.9 0.28 6E-06 52.7 -1.9 44 432-475 283-326 (395)
171 PF08172 CASP_C: CASP C termin 80.6 6 0.00013 40.7 7.5 38 451-488 89-126 (248)
172 COG2919 Septum formation initi 80.6 29 0.00064 31.7 11.2 78 433-519 20-97 (117)
173 PF12329 TMF_DNA_bd: TATA elem 80.5 32 0.0007 29.4 10.7 15 464-478 14-28 (74)
174 PF10212 TTKRSYEDQ: Predicted 80.4 14 0.00031 41.9 10.9 67 457-526 450-516 (518)
175 PF04012 PspA_IM30: PspA/IM30 80.3 50 0.0011 32.3 13.5 41 461-501 104-144 (221)
176 PF07851 TMPIT: TMPIT-like pro 80.2 22 0.00047 38.5 11.7 75 455-529 4-86 (330)
177 COG1196 Smc Chromosome segrega 80.2 37 0.00081 41.4 15.0 9 356-364 635-643 (1163)
178 COG2900 SlyX Uncharacterized p 80.1 8.6 0.00019 33.5 7.1 48 455-502 8-55 (72)
179 PHA03162 hypothetical protein; 79.9 6.8 0.00015 37.6 7.0 27 452-478 10-36 (135)
180 PF06419 COG6: Conserved oligo 79.7 30 0.00066 39.6 13.4 87 438-524 28-117 (618)
181 TIGR00219 mreC rod shape-deter 79.7 14 0.0003 38.4 9.9 13 516-528 96-108 (283)
182 TIGR02231 conserved hypothetic 79.5 23 0.00051 39.1 12.1 7 455-461 102-108 (525)
183 PF02183 HALZ: Homeobox associ 79.5 7.5 0.00016 30.7 6.1 40 460-499 3-42 (45)
184 PRK02119 hypothetical protein; 79.4 15 0.00033 31.4 8.4 42 457-498 4-45 (73)
185 PRK00888 ftsB cell division pr 79.3 7.5 0.00016 35.1 6.9 29 474-502 32-60 (105)
186 KOG1899 LAR transmembrane tyro 79.3 21 0.00046 41.8 11.8 84 437-524 127-218 (861)
187 PF07798 DUF1640: Protein of u 79.3 17 0.00037 35.0 9.7 12 410-421 15-26 (177)
188 PF07889 DUF1664: Protein of u 79.1 16 0.00035 34.4 9.2 64 467-533 41-104 (126)
189 COG4942 Membrane-bound metallo 78.8 39 0.00084 37.7 13.4 67 441-507 38-104 (420)
190 PRK04406 hypothetical protein; 78.8 17 0.00038 31.3 8.6 44 457-500 6-49 (75)
191 PF09755 DUF2046: Uncharacteri 78.8 71 0.0015 34.5 14.8 16 514-529 188-203 (310)
192 PF09728 Taxilin: Myosin-like 78.8 16 0.00036 38.5 10.2 54 463-516 252-305 (309)
193 TIGR03185 DNA_S_dndD DNA sulfu 78.7 50 0.0011 37.7 14.7 79 455-533 209-291 (650)
194 KOG1962 B-cell receptor-associ 78.7 11 0.00025 38.4 8.7 43 460-502 149-191 (216)
195 PRK12704 phosphodiesterase; Pr 78.6 91 0.002 35.4 16.4 15 451-465 53-67 (520)
196 PF08581 Tup_N: Tup N-terminal 78.6 46 0.00099 29.2 12.4 70 455-528 4-74 (79)
197 KOG4643 Uncharacterized coiled 78.5 30 0.00065 42.4 13.1 60 433-492 372-431 (1195)
198 KOG4403 Cell surface glycoprot 78.5 14 0.00031 41.5 9.9 64 465-528 255-319 (575)
199 PF09744 Jnk-SapK_ap_N: JNK_SA 78.4 50 0.0011 32.2 12.6 39 465-503 85-123 (158)
200 PF10211 Ax_dynein_light: Axon 78.3 42 0.0009 33.1 12.2 57 472-528 123-180 (189)
201 TIGR00219 mreC rod shape-deter 78.3 8.6 0.00019 39.9 7.9 37 463-499 67-107 (283)
202 PRK13169 DNA replication intia 78.2 13 0.00028 34.4 8.1 40 459-498 5-44 (110)
203 TIGR00414 serS seryl-tRNA synt 78.1 28 0.0006 38.0 12.0 29 457-485 32-60 (418)
204 KOG4001 Axonemal dynein light 78.1 35 0.00077 35.3 11.8 52 444-495 170-225 (259)
205 PF09738 DUF2051: Double stran 78.0 25 0.00053 37.5 11.2 18 427-444 85-102 (302)
206 PF05377 FlaC_arch: Flagella a 77.9 12 0.00026 31.1 7.0 48 457-518 2-49 (55)
207 smart00502 BBC B-Box C-termina 77.9 43 0.00094 28.6 13.4 80 451-530 17-98 (127)
208 PF00261 Tropomyosin: Tropomyo 77.7 75 0.0016 31.9 14.1 39 461-499 119-157 (237)
209 KOG2391 Vacuolar sorting prote 77.7 17 0.00037 39.7 10.0 43 478-520 234-276 (365)
210 KOG4360 Uncharacterized coiled 77.6 22 0.00048 40.7 11.2 49 456-504 220-268 (596)
211 PF08647 BRE1: BRE1 E3 ubiquit 77.5 51 0.0011 29.2 13.9 75 436-510 5-80 (96)
212 PF12795 MscS_porin: Mechanose 77.5 62 0.0013 32.4 13.4 60 461-520 149-208 (240)
213 PF15619 Lebercilin: Ciliary p 77.3 54 0.0012 32.7 12.8 17 513-529 173-189 (194)
214 KOG0946 ER-Golgi vesicle-tethe 77.3 28 0.0006 41.8 12.2 64 437-500 653-716 (970)
215 PF02841 GBP_C: Guanylate-bind 77.2 94 0.002 32.1 15.4 12 513-524 286-297 (297)
216 PRK00888 ftsB cell division pr 77.1 8.7 0.00019 34.7 6.6 32 452-483 31-62 (105)
217 TIGR02894 DNA_bind_RsfA transc 77.1 14 0.0003 36.4 8.5 43 474-516 102-144 (161)
218 PHA03155 hypothetical protein; 77.0 20 0.00043 33.8 9.0 25 456-480 9-33 (115)
219 KOG0250 DNA repair protein RAD 76.8 63 0.0014 39.9 15.2 53 450-502 374-427 (1074)
220 PF05103 DivIVA: DivIVA protei 76.7 1.4 3.1E-05 39.1 1.6 47 455-501 25-71 (131)
221 KOG2010 Double stranded RNA bi 76.2 10 0.00022 41.2 7.9 53 460-512 145-198 (405)
222 KOG4571 Activating transcripti 76.2 19 0.00041 38.4 9.7 28 478-505 250-277 (294)
223 PF06785 UPF0242: Uncharacteri 75.9 33 0.00072 37.6 11.6 52 449-500 121-172 (401)
224 PF15294 Leu_zip: Leucine zipp 75.9 8.7 0.00019 40.5 7.2 45 460-504 130-174 (278)
225 PF04012 PspA_IM30: PspA/IM30 75.9 82 0.0018 30.8 14.6 27 439-465 49-75 (221)
226 KOG0946 ER-Golgi vesicle-tethe 75.9 21 0.00046 42.7 10.8 69 454-530 649-718 (970)
227 PF08537 NBP1: Fungal Nap bind 75.6 29 0.00064 37.5 11.1 77 433-509 121-208 (323)
228 PF04728 LPP: Lipoprotein leuc 75.6 28 0.00061 29.1 8.6 45 456-500 4-48 (56)
229 PF13094 CENP-Q: CENP-Q, a CEN 75.4 29 0.00063 32.7 9.9 59 458-516 23-81 (160)
230 PF07926 TPR_MLP1_2: TPR/MLP1/ 75.4 68 0.0015 29.6 12.5 73 455-531 46-118 (132)
231 PRK14127 cell division protein 75.2 19 0.00041 33.3 8.3 28 456-483 31-58 (109)
232 PRK00106 hypothetical protein; 75.0 87 0.0019 35.9 15.1 27 444-470 61-87 (535)
233 KOG1853 LIS1-interacting prote 75.0 90 0.002 33.4 14.1 94 437-530 27-124 (333)
234 PF14915 CCDC144C: CCDC144C pr 74.9 91 0.002 33.7 14.3 59 444-502 182-240 (305)
235 PF10174 Cast: RIM-binding pro 74.8 49 0.0011 39.4 13.6 63 465-527 318-380 (775)
236 KOG0999 Microtubule-associated 74.7 23 0.00049 41.1 10.4 75 460-534 6-80 (772)
237 PF05667 DUF812: Protein of un 74.7 22 0.00047 41.0 10.5 46 455-500 335-380 (594)
238 PF10146 zf-C4H2: Zinc finger- 74.7 52 0.0011 33.8 12.1 60 458-517 42-102 (230)
239 PF10205 KLRAQ: Predicted coil 74.6 46 0.001 30.7 10.6 66 463-528 6-71 (102)
240 KOG2264 Exostosin EXT1L [Signa 74.6 21 0.00046 41.5 10.2 49 454-502 92-140 (907)
241 PF15397 DUF4618: Domain of un 74.5 99 0.0021 32.6 14.3 67 459-525 78-156 (258)
242 COG4372 Uncharacterized protei 74.5 1.3E+02 0.0027 34.0 15.5 84 446-529 128-228 (499)
243 KOG0288 WD40 repeat protein Ti 74.4 54 0.0012 36.8 12.9 40 459-498 31-70 (459)
244 PRK00409 recombination and DNA 74.3 40 0.00087 39.8 12.7 10 109-118 210-219 (782)
245 PF05769 DUF837: Protein of un 74.3 92 0.002 30.9 13.4 68 462-530 70-140 (181)
246 PF04871 Uso1_p115_C: Uso1 / p 74.2 42 0.00091 31.7 10.6 26 507-532 91-116 (136)
247 PF05700 BCAS2: Breast carcino 74.2 14 0.00031 36.8 8.0 31 475-505 174-204 (221)
248 smart00338 BRLZ basic region l 74.2 21 0.00046 28.9 7.6 27 478-504 28-54 (65)
249 TIGR00606 rad50 rad50. This fa 74.2 63 0.0014 40.0 14.8 33 459-491 885-917 (1311)
250 TIGR01069 mutS2 MutS2 family p 74.1 43 0.00094 39.5 12.9 11 108-118 204-214 (771)
251 KOG4234 TPR repeat-containing 74.1 47 0.001 34.8 11.6 53 492-557 201-253 (271)
252 PF09325 Vps5: Vps5 C terminal 74.0 60 0.0013 31.4 12.0 88 437-527 117-204 (236)
253 PF09744 Jnk-SapK_ap_N: JNK_SA 73.9 71 0.0015 31.2 12.3 37 435-471 30-66 (158)
254 PF14932 HAUS-augmin3: HAUS au 73.8 56 0.0012 33.4 12.2 43 455-497 68-110 (256)
255 PF13166 AAA_13: AAA domain 73.7 70 0.0015 36.2 14.1 68 456-523 404-471 (712)
256 PF12709 Kinetocho_Slk19: Cent 73.6 15 0.00031 33.1 7.0 48 455-502 27-75 (87)
257 KOG3433 Protein involved in me 73.6 32 0.00069 34.9 10.1 54 451-504 77-130 (203)
258 KOG0161 Myosin class II heavy 73.5 63 0.0014 42.2 14.8 47 449-495 895-941 (1930)
259 PF09738 DUF2051: Double stran 73.5 43 0.00094 35.7 11.6 9 548-556 202-210 (302)
260 PHA03011 hypothetical protein; 73.5 25 0.00055 32.8 8.6 56 474-529 62-117 (120)
261 PRK12705 hypothetical protein; 73.4 62 0.0013 36.8 13.4 34 474-507 86-119 (508)
262 KOG0804 Cytoplasmic Zn-finger 73.4 39 0.00084 38.2 11.6 48 454-501 353-400 (493)
263 cd07627 BAR_Vps5p The Bin/Amph 73.3 80 0.0017 31.2 12.8 78 438-525 98-182 (216)
264 KOG1103 Predicted coiled-coil 73.3 11 0.00023 41.6 7.3 63 443-505 226-288 (561)
265 COG0172 SerS Seryl-tRNA synthe 73.2 47 0.001 37.1 12.2 71 461-538 42-116 (429)
266 PF09755 DUF2046: Uncharacteri 73.2 37 0.0008 36.5 11.1 27 456-482 42-68 (310)
267 TIGR02680 conserved hypothetic 73.0 69 0.0015 40.1 14.8 6 279-284 57-62 (1353)
268 KOG0709 CREB/ATF family transc 72.9 12 0.00025 42.1 7.6 65 434-502 244-312 (472)
269 PLN02939 transferase, transfer 72.8 1.2E+02 0.0027 37.2 16.3 25 481-505 224-248 (977)
270 KOG3119 Basic region leucine z 72.6 20 0.00043 37.1 8.8 38 495-532 220-257 (269)
271 PF09727 CortBP2: Cortactin-bi 72.6 1E+02 0.0022 31.2 13.4 30 434-465 94-123 (192)
272 TIGR03319 YmdA_YtgF conserved 72.6 1.1E+02 0.0024 34.6 15.2 32 474-505 85-116 (514)
273 PF11180 DUF2968: Protein of u 72.6 90 0.0019 31.7 12.9 70 459-528 116-185 (192)
274 KOG4674 Uncharacterized conser 72.5 18 0.0004 46.3 9.9 68 459-526 1254-1322(1822)
275 PF06632 XRCC4: DNA double-str 72.4 51 0.0011 35.7 12.0 21 462-482 151-171 (342)
276 PF04102 SlyX: SlyX; InterPro 72.4 23 0.0005 29.7 7.6 41 460-500 2-42 (69)
277 PRK00106 hypothetical protein; 72.2 1.1E+02 0.0023 35.2 14.9 34 474-507 106-139 (535)
278 COG1340 Uncharacterized archae 72.2 1.2E+02 0.0027 32.5 14.5 85 438-528 30-124 (294)
279 PRK02793 phi X174 lysis protei 71.9 30 0.00065 29.5 8.2 30 458-487 4-33 (72)
280 PF05529 Bap31: B-cell recepto 71.9 40 0.00088 32.5 10.2 34 491-524 155-188 (192)
281 PF05791 Bacillus_HBL: Bacillu 71.9 42 0.00091 32.7 10.4 79 447-528 102-180 (184)
282 PF07200 Mod_r: Modifier of ru 71.7 84 0.0018 29.0 13.0 81 419-504 3-83 (150)
283 PF05483 SCP-1: Synaptonemal c 71.7 38 0.00082 40.1 11.4 60 465-524 590-649 (786)
284 PRK13729 conjugal transfer pil 71.7 14 0.00031 41.6 7.9 31 472-502 79-109 (475)
285 PF12128 DUF3584: Protein of u 71.4 61 0.0013 39.9 13.8 92 434-528 785-879 (1201)
286 KOG3650 Predicted coiled-coil 71.2 16 0.00034 34.0 6.8 44 460-503 61-104 (120)
287 PF11365 DUF3166: Protein of u 71.2 59 0.0013 29.7 10.3 44 457-500 3-46 (96)
288 PF15035 Rootletin: Ciliary ro 71.1 64 0.0014 32.0 11.5 46 476-528 67-112 (182)
289 PF07246 Phlebovirus_NSM: Phle 70.9 41 0.0009 35.5 10.6 67 462-529 175-241 (264)
290 PF04977 DivIC: Septum formati 70.9 14 0.0003 30.0 5.9 29 474-502 22-50 (80)
291 PF04977 DivIC: Septum formati 70.9 18 0.00038 29.4 6.5 29 453-481 22-50 (80)
292 PF07412 Geminin: Geminin; In 70.7 14 0.00031 37.4 7.1 29 469-497 125-153 (200)
293 TIGR03319 YmdA_YtgF conserved 70.7 1.2E+02 0.0026 34.4 14.9 26 445-470 41-66 (514)
294 KOG1924 RhoA GTPase effector D 70.6 12 0.00027 44.6 7.4 14 229-242 612-625 (1102)
295 PF06216 RTBV_P46: Rice tungro 70.6 20 0.00044 38.0 8.3 49 455-503 64-112 (389)
296 PF02050 FliJ: Flagellar FliJ 70.3 64 0.0014 27.0 11.8 6 458-463 22-27 (123)
297 PF13874 Nup54: Nucleoporin co 70.3 40 0.00086 31.6 9.5 64 457-527 53-116 (141)
298 KOG2391 Vacuolar sorting prote 70.2 36 0.00079 37.2 10.2 6 124-129 76-81 (365)
299 PF05278 PEARLI-4: Arabidopsis 69.9 1.3E+02 0.0029 31.9 14.0 17 348-364 110-130 (269)
300 PF06008 Laminin_I: Laminin Do 69.9 57 0.0012 33.0 11.2 50 456-505 46-95 (264)
301 PF15058 Speriolin_N: Sperioli 69.8 6.9 0.00015 39.6 4.6 41 483-523 12-52 (200)
302 PF11180 DUF2968: Protein of u 69.8 1.3E+02 0.0029 30.6 13.8 84 427-511 99-182 (192)
303 KOG4807 F-actin binding protei 69.7 54 0.0012 36.9 11.5 48 453-500 416-480 (593)
304 KOG2264 Exostosin EXT1L [Signa 69.6 28 0.00061 40.6 9.7 63 473-535 90-152 (907)
305 KOG0933 Structural maintenance 69.6 1E+02 0.0022 38.1 14.6 20 179-198 559-578 (1174)
306 KOG4001 Axonemal dynein light 69.6 36 0.00078 35.2 9.6 18 350-367 121-138 (259)
307 COG3883 Uncharacterized protei 69.5 38 0.00081 35.7 10.0 47 459-505 49-95 (265)
308 TIGR00606 rad50 rad50. This fa 69.1 81 0.0018 39.1 14.2 46 454-499 887-932 (1311)
309 PF10168 Nup88: Nuclear pore c 69.1 1.3E+02 0.0028 35.7 15.1 43 458-500 561-603 (717)
310 PRK09841 cryptic autophosphory 69.0 1.5E+02 0.0032 34.5 15.6 33 444-476 263-295 (726)
311 PF00170 bZIP_1: bZIP transcri 69.0 40 0.00086 27.3 8.1 25 478-502 28-52 (64)
312 PRK13428 F0F1 ATP synthase sub 68.3 1.9E+02 0.004 32.2 15.5 45 433-477 31-75 (445)
313 PF05812 Herpes_BLRF2: Herpesv 68.3 7.3 0.00016 36.6 4.1 28 453-480 1-28 (118)
314 PF06810 Phage_GP20: Phage min 68.3 68 0.0015 30.9 10.8 60 458-517 30-92 (155)
315 KOG0243 Kinesin-like protein [ 68.3 1.2E+02 0.0026 37.5 14.9 50 450-499 443-492 (1041)
316 PF05622 HOOK: HOOK protein; 68.3 1.7 3.6E-05 49.8 0.0 52 452-503 322-376 (713)
317 PF15619 Lebercilin: Ciliary p 68.2 97 0.0021 31.0 12.1 32 445-476 8-40 (194)
318 PRK00846 hypothetical protein; 68.1 38 0.00082 29.7 8.2 42 458-499 9-50 (77)
319 PF12128 DUF3584: Protein of u 68.1 1.3E+02 0.0028 37.2 15.5 14 265-278 581-594 (1201)
320 PF13870 DUF4201: Domain of un 68.0 1.1E+02 0.0023 29.4 12.0 50 483-532 84-133 (177)
321 PF05483 SCP-1: Synaptonemal c 67.9 1.5E+02 0.0032 35.5 15.0 92 438-529 590-686 (786)
322 COG1340 Uncharacterized archae 67.8 71 0.0015 34.3 11.7 98 428-531 5-103 (294)
323 PRK10803 tol-pal system protei 67.8 42 0.00092 34.5 9.9 49 457-505 42-90 (263)
324 KOG0964 Structural maintenance 67.8 1.1E+02 0.0023 38.0 14.2 87 446-532 409-502 (1200)
325 KOG0994 Extracellular matrix g 67.7 1.1E+02 0.0023 38.7 14.2 55 475-529 1688-1749(1758)
326 PF10779 XhlA: Haemolysin XhlA 67.5 40 0.00086 28.3 8.0 51 458-508 2-52 (71)
327 PF05529 Bap31: B-cell recepto 67.5 45 0.00097 32.2 9.5 33 470-502 155-187 (192)
328 PF04849 HAP1_N: HAP1 N-termin 67.5 62 0.0013 34.8 11.2 43 457-499 243-285 (306)
329 PF04065 Not3: Not1 N-terminal 67.4 84 0.0018 32.5 11.8 101 419-529 101-208 (233)
330 KOG2189 Vacuolar H+-ATPase V0 67.4 41 0.00088 40.2 10.6 44 470-513 93-136 (829)
331 COG1842 PspA Phage shock prote 67.4 86 0.0019 32.1 11.8 27 439-465 50-76 (225)
332 PF13874 Nup54: Nucleoporin co 67.4 39 0.00084 31.6 8.8 36 470-505 87-122 (141)
333 PRK04325 hypothetical protein; 67.4 38 0.00082 29.0 8.0 28 457-484 4-31 (74)
334 PF01166 TSC22: TSC-22/dip/bun 67.3 9.8 0.00021 32.1 4.3 26 472-497 17-42 (59)
335 PRK04863 mukB cell division pr 67.3 72 0.0016 40.6 13.4 53 452-504 373-425 (1486)
336 TIGR00634 recN DNA repair prot 67.3 71 0.0015 35.9 12.3 54 459-512 172-231 (563)
337 KOG0249 LAR-interacting protei 67.3 79 0.0017 37.9 12.7 39 486-524 219-257 (916)
338 PF03980 Nnf1: Nnf1 ; InterPr 67.1 8.7 0.00019 34.0 4.3 32 452-483 77-108 (109)
339 KOG0804 Cytoplasmic Zn-finger 66.8 57 0.0012 37.0 11.1 11 518-528 435-445 (493)
340 PRK00295 hypothetical protein; 66.7 42 0.00091 28.3 8.0 41 460-500 3-43 (68)
341 PRK06569 F0F1 ATP synthase sub 66.6 1.3E+02 0.0029 29.4 12.7 45 433-477 40-84 (155)
342 PF10267 Tmemb_cc2: Predicted 66.6 54 0.0012 36.3 10.9 15 491-505 277-291 (395)
343 PRK12705 hypothetical protein; 66.5 2.1E+02 0.0045 32.8 15.6 24 460-483 93-116 (508)
344 PF12761 End3: Actin cytoskele 66.4 77 0.0017 32.2 11.1 32 493-524 163-194 (195)
345 PF04871 Uso1_p115_C: Uso1 / p 66.4 1.2E+02 0.0026 28.7 12.9 29 455-483 27-55 (136)
346 TIGR02209 ftsL_broad cell divi 66.4 28 0.00061 29.1 7.0 35 470-504 25-59 (85)
347 TIGR03007 pepcterm_ChnLen poly 66.2 1.4E+02 0.003 32.5 13.9 71 456-526 311-384 (498)
348 PF06810 Phage_GP20: Phage min 66.2 62 0.0013 31.1 10.0 32 454-485 33-67 (155)
349 KOG0994 Extracellular matrix g 66.0 68 0.0015 40.3 12.2 61 470-530 1226-1286(1758)
350 PF02388 FemAB: FemAB family; 66.0 35 0.00076 36.9 9.3 26 455-480 242-267 (406)
351 PRK11519 tyrosine kinase; Prov 65.8 1.1E+02 0.0024 35.5 13.8 34 443-476 262-295 (719)
352 PRK01156 chromosome segregatio 65.7 1.6E+02 0.0036 34.6 15.2 8 413-420 148-155 (895)
353 PF09789 DUF2353: Uncharacteri 65.7 88 0.0019 33.9 12.0 92 440-532 35-154 (319)
354 PF14282 FlxA: FlxA-like prote 65.7 33 0.00072 30.9 7.7 20 457-476 21-40 (106)
355 TIGR02680 conserved hypothetic 65.7 1.4E+02 0.003 37.6 15.2 36 446-481 873-908 (1353)
356 KOG4603 TBP-1 interacting prot 65.5 66 0.0014 32.6 10.3 24 459-482 90-113 (201)
357 PRK10920 putative uroporphyrin 65.5 1.2E+02 0.0025 33.6 13.1 55 474-528 90-146 (390)
358 PF15294 Leu_zip: Leucine zipp 65.3 26 0.00057 37.1 7.9 55 478-532 127-181 (278)
359 PF08702 Fib_alpha: Fibrinogen 65.1 90 0.0019 29.9 10.8 35 497-531 97-131 (146)
360 PF01486 K-box: K-box region; 64.6 16 0.00035 32.0 5.4 23 456-478 76-98 (100)
361 PF12777 MT: Microtubule-bindi 64.6 34 0.00074 36.1 8.7 93 430-527 215-307 (344)
362 TIGR01005 eps_transp_fam exopo 64.5 1.3E+02 0.0028 34.8 13.9 37 441-477 187-223 (754)
363 PF07558 Shugoshin_N: Shugoshi 64.3 7.5 0.00016 30.7 2.9 33 467-499 12-44 (46)
364 PF14817 HAUS5: HAUS augmin-li 64.0 1.2E+02 0.0027 35.4 13.6 60 443-502 74-133 (632)
365 COG4467 Regulator of replicati 63.9 35 0.00077 32.0 7.6 43 460-502 6-48 (114)
366 KOG0980 Actin-binding protein 63.9 1.3E+02 0.0028 36.8 13.8 24 2-25 141-174 (980)
367 PLN02678 seryl-tRNA synthetase 63.8 47 0.001 37.1 9.9 48 460-507 45-95 (448)
368 COG4372 Uncharacterized protei 63.7 2.6E+02 0.0057 31.7 15.6 99 432-530 95-198 (499)
369 CHL00118 atpG ATP synthase CF0 63.5 1.3E+02 0.0029 28.3 15.4 96 433-528 52-150 (156)
370 KOG0996 Structural maintenance 63.4 1.2E+02 0.0026 38.1 13.6 89 445-535 532-620 (1293)
371 cd07596 BAR_SNX The Bin/Amphip 63.4 1.3E+02 0.0029 28.1 14.6 69 434-502 96-171 (218)
372 PRK00736 hypothetical protein; 63.3 53 0.0011 27.8 8.0 24 460-483 3-26 (68)
373 KOG4196 bZIP transcription fac 63.3 1.1E+02 0.0024 29.6 10.9 37 465-502 57-93 (135)
374 PRK11281 hypothetical protein; 62.9 65 0.0014 39.9 11.7 60 431-490 156-220 (1113)
375 PF15254 CCDC14: Coiled-coil d 62.5 77 0.0017 38.1 11.6 13 518-530 536-548 (861)
376 KOG0999 Microtubule-associated 62.3 1.1E+02 0.0025 35.7 12.6 46 460-505 168-216 (772)
377 KOG4343 bZIP transcription fac 62.3 31 0.00066 39.8 8.2 64 431-505 275-338 (655)
378 COG1792 MreC Cell shape-determ 62.2 49 0.0011 34.6 9.2 43 484-530 67-109 (284)
379 PF01920 Prefoldin_2: Prefoldi 62.2 23 0.00051 30.2 5.8 26 457-482 64-89 (106)
380 PF09730 BicD: Microtubule-ass 62.1 64 0.0014 38.3 11.0 19 512-530 122-140 (717)
381 KOG4360 Uncharacterized coiled 62.1 95 0.002 35.9 11.8 22 477-498 227-248 (596)
382 PF09763 Sec3_C: Exocyst compl 62.0 1.8E+02 0.0039 33.6 14.4 43 460-502 28-70 (701)
383 PF04949 Transcrip_act: Transc 62.0 1.7E+02 0.0037 29.0 13.2 91 434-525 44-147 (159)
384 PF12329 TMF_DNA_bd: TATA elem 61.9 1E+02 0.0022 26.4 10.5 52 453-504 10-61 (74)
385 PRK09174 F0F1 ATP synthase sub 61.8 1.8E+02 0.0039 29.2 15.6 45 433-477 83-127 (204)
386 PF10630 DUF2476: Protein of u 61.7 26 0.00057 36.8 7.1 28 163-190 228-255 (256)
387 PF15066 CAGE1: Cancer-associa 61.7 46 0.00099 37.9 9.3 66 460-525 343-425 (527)
388 COG1842 PspA Phage shock prote 61.6 2E+02 0.0043 29.6 13.6 40 460-499 97-136 (225)
389 KOG0978 E3 ubiquitin ligase in 61.6 2.2E+02 0.0048 34.0 15.0 20 513-532 603-622 (698)
390 KOG0982 Centrosomal protein Nu 61.2 2.3E+02 0.0049 32.4 14.3 52 433-485 281-334 (502)
391 PF04340 DUF484: Protein of un 61.2 63 0.0014 32.0 9.4 51 456-510 41-91 (225)
392 PF07798 DUF1640: Protein of u 61.2 1.6E+02 0.0035 28.4 16.1 11 515-525 142-152 (177)
393 PF09787 Golgin_A5: Golgin sub 61.1 1.1E+02 0.0025 34.2 12.3 12 518-529 369-380 (511)
394 COG3879 Uncharacterized protei 60.9 66 0.0014 33.7 9.8 19 515-533 93-111 (247)
395 PF05557 MAD: Mitotic checkpoi 60.8 64 0.0014 37.4 10.7 27 507-533 562-588 (722)
396 PRK14872 rod shape-determining 60.8 61 0.0013 35.2 9.9 25 483-507 57-81 (337)
397 PF05377 FlaC_arch: Flagella a 60.6 53 0.0012 27.4 7.3 32 457-488 9-40 (55)
398 KOG1265 Phospholipase C [Lipid 60.5 1.2E+02 0.0026 37.3 12.8 71 432-502 1026-1101(1189)
399 PRK10636 putative ABC transpor 60.5 75 0.0016 36.3 11.0 24 456-479 564-587 (638)
400 PF14645 Chibby: Chibby family 60.4 27 0.00058 32.4 6.2 36 460-495 76-111 (116)
401 PF09728 Taxilin: Myosin-like 60.4 2.4E+02 0.0051 30.1 16.0 76 454-529 49-125 (309)
402 PF14915 CCDC144C: CCDC144C pr 60.3 1.1E+02 0.0023 33.2 11.3 70 458-527 217-294 (305)
403 PF04642 DUF601: Protein of un 60.3 43 0.00094 35.6 8.3 48 456-503 218-272 (311)
404 KOG0976 Rho/Rac1-interacting s 60.2 1.6E+02 0.0034 36.1 13.5 14 264-277 161-174 (1265)
405 PF04899 MbeD_MobD: MbeD/MobD 60.2 1.1E+02 0.0025 26.3 10.1 34 474-507 26-59 (70)
406 PF06008 Laminin_I: Laminin Do 60.1 1.1E+02 0.0025 30.9 11.2 51 455-505 52-102 (264)
407 PF10046 BLOC1_2: Biogenesis o 59.7 88 0.0019 27.8 9.2 15 498-512 74-88 (99)
408 KOG0995 Centromere-associated 59.6 1.2E+02 0.0027 35.2 12.3 35 468-502 286-320 (581)
409 PF05278 PEARLI-4: Arabidopsis 59.5 1.4E+02 0.0031 31.7 12.0 29 474-502 212-240 (269)
410 PLN02320 seryl-tRNA synthetase 59.5 83 0.0018 35.8 11.0 46 461-506 106-153 (502)
411 PF07407 Seadorna_VP6: Seadorn 59.5 44 0.00096 36.7 8.5 21 468-488 38-58 (420)
412 COG1382 GimC Prefoldin, chaper 59.2 40 0.00087 31.8 7.2 27 452-478 67-93 (119)
413 KOG4436 Predicted GTPase activ 59.0 11 0.00024 44.9 4.3 74 455-528 829-907 (948)
414 PF10234 Cluap1: Clusterin-ass 59.0 95 0.0021 32.8 10.6 60 468-527 175-234 (267)
415 KOG4657 Uncharacterized conser 59.0 1.9E+02 0.004 30.5 12.4 82 447-529 40-125 (246)
416 PF03961 DUF342: Protein of un 58.8 49 0.0011 36.1 8.9 9 179-187 132-140 (451)
417 PF12709 Kinetocho_Slk19: Cent 58.8 87 0.0019 28.3 8.9 44 452-495 39-82 (87)
418 PF13805 Pil1: Eisosome compon 58.8 63 0.0014 34.2 9.3 62 439-505 132-194 (271)
419 KOG2077 JNK/SAPK-associated pr 58.8 89 0.0019 36.7 11.0 69 444-512 346-428 (832)
420 PF15058 Speriolin_N: Sperioli 58.7 22 0.00047 36.2 5.7 36 457-500 7-42 (200)
421 KOG2991 Splicing regulator [RN 58.7 87 0.0019 33.6 10.2 44 459-502 214-262 (330)
422 PHA03011 hypothetical protein; 58.6 61 0.0013 30.4 8.1 60 464-523 59-118 (120)
423 PF04375 HemX: HemX; InterPro 58.4 96 0.0021 33.4 10.9 16 513-528 125-140 (372)
424 PF07716 bZIP_2: Basic region 58.4 29 0.00062 27.5 5.3 26 478-503 27-52 (54)
425 PF10234 Cluap1: Clusterin-ass 58.1 90 0.0019 33.0 10.3 67 437-503 164-238 (267)
426 PF00769 ERM: Ezrin/radixin/mo 58.1 1.2E+02 0.0027 31.0 11.1 21 457-477 35-55 (246)
427 PF08232 Striatin: Striatin fa 58.0 63 0.0014 30.4 8.3 47 459-505 15-61 (134)
428 COG1382 GimC Prefoldin, chaper 57.9 1.7E+02 0.0037 27.7 12.1 37 493-529 73-109 (119)
429 PF08703 PLC-beta_C: PLC-beta 57.8 2.2E+02 0.0047 28.8 13.1 68 435-502 7-79 (185)
430 TIGR03007 pepcterm_ChnLen poly 57.8 1.5E+02 0.0033 32.2 12.4 27 476-502 204-230 (498)
431 PF14645 Chibby: Chibby family 57.7 35 0.00075 31.7 6.5 22 481-502 76-97 (116)
432 KOG0612 Rho-associated, coiled 57.7 1.8E+02 0.0039 36.7 13.9 21 179-201 220-241 (1317)
433 PF15070 GOLGA2L5: Putative go 57.7 83 0.0018 36.6 10.8 63 454-516 166-228 (617)
434 PF10226 DUF2216: Uncharacteri 57.3 2.3E+02 0.005 29.0 16.0 33 410-450 7-39 (195)
435 PF14523 Syntaxin_2: Syntaxin- 57.3 1.2E+02 0.0027 25.9 10.9 23 473-495 30-52 (102)
436 PF07558 Shugoshin_N: Shugoshi 56.6 12 0.00026 29.5 2.9 42 436-478 3-44 (46)
437 PF01166 TSC22: TSC-22/dip/bun 56.5 18 0.00039 30.6 4.0 23 455-477 21-43 (59)
438 PF02050 FliJ: Flagellar FliJ 56.3 1.2E+02 0.0026 25.4 12.6 30 455-484 52-81 (123)
439 TIGR03545 conserved hypothetic 56.1 1.2E+02 0.0027 34.8 11.7 76 453-528 189-272 (555)
440 KOG0612 Rho-associated, coiled 56.0 1.6E+02 0.0034 37.3 13.0 11 180-190 205-215 (1317)
441 PRK03947 prefoldin subunit alp 55.9 1.5E+02 0.0032 27.3 10.3 30 454-483 5-34 (140)
442 PF06632 XRCC4: DNA double-str 55.8 1.7E+02 0.0037 31.8 12.2 42 457-498 139-180 (342)
443 PF04129 Vps52: Vps52 / Sac2 f 55.7 1.4E+02 0.0031 33.4 12.0 63 455-517 14-76 (508)
444 PF15397 DUF4618: Domain of un 55.6 1.5E+02 0.0032 31.3 11.3 27 455-481 6-32 (258)
445 KOG4572 Predicted DNA-binding 55.5 2.6E+02 0.0056 34.5 14.2 81 455-535 995-1116(1424)
446 PF04899 MbeD_MobD: MbeD/MobD 55.5 88 0.0019 27.0 8.1 41 465-505 24-64 (70)
447 PF04340 DUF484: Protein of un 55.4 55 0.0012 32.4 7.9 40 477-516 41-80 (225)
448 TIGR03017 EpsF chain length de 55.4 2.5E+02 0.0055 30.0 13.3 98 432-530 142-273 (444)
449 PF03962 Mnd1: Mnd1 family; I 55.1 84 0.0018 31.1 9.0 52 443-494 71-128 (188)
450 KOG3335 Predicted coiled-coil 55.0 17 0.00037 36.4 4.3 42 434-481 91-132 (181)
451 KOG0239 Kinesin (KAR3 subfamil 55.0 98 0.0021 36.4 10.9 17 519-535 301-317 (670)
452 PF07926 TPR_MLP1_2: TPR/MLP1/ 54.9 1.8E+02 0.0038 26.9 14.9 32 489-520 97-128 (132)
453 COG5293 Predicted ATPase [Gene 54.8 2.6E+02 0.0057 32.3 13.6 78 436-513 329-416 (591)
454 KOG0978 E3 ubiquitin ligase in 54.7 2.4E+02 0.0052 33.7 13.8 45 459-503 563-607 (698)
455 PRK14471 F0F1 ATP synthase sub 54.6 1.9E+02 0.0042 27.2 15.4 46 433-478 38-83 (164)
456 PRK11091 aerobic respiration c 54.6 2.6E+02 0.0057 31.9 14.0 18 514-531 148-165 (779)
457 PF05300 DUF737: Protein of un 54.6 1.1E+02 0.0025 30.7 9.9 52 437-488 116-167 (187)
458 PF06818 Fez1: Fez1; InterPro 54.5 1.2E+02 0.0027 31.0 10.2 18 513-530 89-106 (202)
459 PF10174 Cast: RIM-binding pro 54.3 2.4E+02 0.0053 33.9 14.0 66 457-529 289-354 (775)
460 PF14661 HAUS6_N: HAUS augmin- 54.2 1.7E+02 0.0037 29.7 11.3 39 454-492 167-208 (247)
461 PF05911 DUF869: Plant protein 54.2 1.3E+02 0.0028 36.1 11.7 50 458-507 592-641 (769)
462 PF10498 IFT57: Intra-flagella 54.1 1.8E+02 0.0039 31.7 12.1 93 432-530 249-354 (359)
463 PF04999 FtsL: Cell division p 54.0 54 0.0012 28.3 6.7 38 468-505 34-71 (97)
464 PF08606 Prp19: Prp19/Pso4-lik 53.9 77 0.0017 27.7 7.5 57 474-530 6-69 (70)
465 KOG0963 Transcription factor/C 53.7 1.9E+02 0.0041 34.1 12.6 39 487-526 321-359 (629)
466 PF09486 HrpB7: Bacterial type 53.7 1.5E+02 0.0032 29.1 10.3 30 455-484 79-108 (158)
467 KOG2129 Uncharacterized conser 53.7 35 0.00075 38.5 6.7 40 458-497 46-85 (552)
468 PRK10636 putative ABC transpor 53.6 81 0.0017 36.0 9.8 30 457-486 558-587 (638)
469 PRK04778 septation ring format 53.5 1.2E+02 0.0026 34.4 11.0 11 520-530 420-430 (569)
470 PRK11091 aerobic respiration c 53.5 1.8E+02 0.0039 33.2 12.5 61 452-512 100-160 (779)
471 PF07889 DUF1664: Protein of u 53.4 1.9E+02 0.0041 27.5 10.7 52 454-505 67-118 (126)
472 KOG3878 Protein involved in ma 53.4 1.4E+02 0.003 33.2 10.9 9 506-514 173-181 (469)
473 PF04728 LPP: Lipoprotein leuc 53.2 1.1E+02 0.0023 25.8 7.9 32 462-493 3-34 (56)
474 KOG1003 Actin filament-coating 53.2 1E+02 0.0022 31.7 9.3 71 458-528 112-182 (205)
475 PRK06975 bifunctional uroporph 52.8 1.8E+02 0.0038 33.9 12.4 13 513-525 416-428 (656)
476 PF04859 DUF641: Plant protein 52.8 43 0.00093 31.9 6.4 10 486-495 118-127 (131)
477 cd07667 BAR_SNX30 The Bin/Amph 52.7 2.7E+02 0.0059 29.1 12.5 72 446-520 151-224 (240)
478 KOG2991 Splicing regulator [RN 52.6 1.5E+02 0.0033 31.8 10.8 78 455-532 101-198 (330)
479 cd07429 Cby_like Chibby, a nuc 52.6 28 0.00061 32.3 5.0 22 462-483 79-100 (108)
480 COG3167 PilO Tfp pilus assembl 52.5 59 0.0013 33.3 7.6 51 453-507 47-97 (211)
481 PF05701 WEMBL: Weak chloropla 52.2 4E+02 0.0086 30.2 15.4 78 440-517 349-427 (522)
482 PRK10476 multidrug resistance 52.1 2.4E+02 0.0053 29.3 12.3 103 428-530 76-185 (346)
483 KOG0979 Structural maintenance 52.1 1.9E+02 0.0041 35.9 12.7 100 431-530 612-714 (1072)
484 PRK14474 F0F1 ATP synthase sub 52.0 2.8E+02 0.0062 28.5 15.5 97 433-529 35-134 (250)
485 PF15188 CCDC-167: Coiled-coil 51.7 72 0.0016 28.6 7.2 60 454-513 4-66 (85)
486 PF05335 DUF745: Protein of un 51.7 2.7E+02 0.0058 28.1 12.3 77 453-529 65-141 (188)
487 PF13805 Pil1: Eisosome compon 51.6 1.9E+02 0.0041 30.8 11.3 85 440-528 133-219 (271)
488 PRK04778 septation ring format 51.6 2.3E+02 0.005 32.2 12.9 94 433-526 309-412 (569)
489 PF12999 PRKCSH-like: Glucosid 51.5 1E+02 0.0022 30.9 9.0 58 448-505 118-175 (176)
490 PF14988 DUF4515: Domain of un 51.5 1.8E+02 0.0039 29.4 10.8 72 441-512 135-206 (206)
491 KOG4370 Ral-GTPase effector RL 51.5 54 0.0012 37.1 7.7 58 472-529 409-466 (514)
492 PF12808 Mto2_bdg: Micro-tubul 51.5 39 0.00086 27.8 5.1 47 452-498 1-51 (52)
493 PF13863 DUF4200: Domain of un 51.4 1.1E+02 0.0024 27.2 8.5 59 424-482 50-108 (126)
494 PF13815 Dzip-like_N: Iguana/D 51.4 1.2E+02 0.0026 27.6 8.9 93 428-520 24-117 (118)
495 COG1322 Predicted nuclease of 51.4 3E+02 0.0066 31.1 13.5 85 443-527 58-148 (448)
496 PF07028 DUF1319: Protein of u 51.3 2.3E+02 0.005 27.2 12.0 80 440-523 35-122 (126)
497 PF01486 K-box: K-box region; 51.3 59 0.0013 28.5 6.7 70 461-530 11-87 (100)
498 PF10359 Fmp27_WPPW: RNA pol I 51.3 64 0.0014 35.9 8.4 65 461-525 162-228 (475)
499 PF10212 TTKRSYEDQ: Predicted 51.2 1.8E+02 0.0039 33.6 11.8 76 455-530 427-510 (518)
500 PRK10698 phage shock protein P 51.2 2.8E+02 0.006 28.1 13.1 87 429-515 50-152 (222)
No 1
>smart00338 BRLZ basic region leucin zipper.
Probab=99.37 E-value=3e-12 Score=103.02 Aligned_cols=63 Identities=38% Similarity=0.500 Sum_probs=57.9
Q ss_pred cChHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007579 431 TDPKRAKRILANRQSAARSKERKMRYISELEHKVQTLQTEATTLSAQLTLLQRDSVGLTNQNN 493 (597)
Q Consensus 431 ~DpKR~KRILaNRESAaRSReRKKqYIeELE~KVq~LQtEN~tLsaQLtlLqre~~~L~aEN~ 493 (597)
.|+|+.+|+++||+||+++|+||+.|+.+||.+|+.|+.+|..|..++..|+.++..|..++.
T Consensus 2 ~~~k~~rR~~rNR~aA~~~R~rKk~~~~~Le~~~~~L~~en~~L~~~~~~l~~e~~~lk~~~~ 64 (65)
T smart00338 2 EDEKRRRRRERNREAARRSRERKKAEIEELERKVEQLEAENERLKKEIERLRRELEKLKSELE 64 (65)
T ss_pred ccHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 478999999999999999999999999999999999999999999999998887777776653
No 2
>PF00170 bZIP_1: bZIP transcription factor cAMP response element binding (CREB) protein signature fos transforming protein signature jun transcription factor signature; InterPro: IPR011616 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotic are proteins that contain a basic region mediating sequence-specific DNA-binding followed by a leucine zipper region (see IPR002158 from INTERPRO) required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2H7H_B 2OQQ_B 1S9K_E 1JNM_A 1JUN_A 1FOS_H 1A02_J 1T2K_C 1CI6_A 1DH3_C ....
Probab=99.24 E-value=4.5e-11 Score=96.13 Aligned_cols=61 Identities=39% Similarity=0.614 Sum_probs=56.5
Q ss_pred ChHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007579 432 DPKRAKRILANRQSAARSKERKMRYISELEHKVQTLQTEATTLSAQLTLLQRDSVGLTNQN 492 (597)
Q Consensus 432 DpKR~KRILaNRESAaRSReRKKqYIeELE~KVq~LQtEN~tLsaQLtlLqre~~~L~aEN 492 (597)
+.|+.+|+++||+||+++|.||+.||++||.+|..|+.+|..|..++..|..++..|..+|
T Consensus 3 ~~k~~~rr~rNR~AAr~~R~RKk~~~~~Le~~~~~L~~en~~L~~~~~~L~~~~~~L~~e~ 63 (64)
T PF00170_consen 3 EDKRERRRERNREAARRSRQRKKQYIEELEEKVEELESENEELKKELEQLKKEIQSLKSEN 63 (64)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 3578899999999999999999999999999999999999999999999999988888877
No 3
>KOG4343 consensus bZIP transcription factor ATF6 [Transcription]
Probab=99.02 E-value=3.9e-10 Score=122.39 Aligned_cols=64 Identities=34% Similarity=0.529 Sum_probs=62.0
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007579 434 KRAKRILANRQSAARSKERKMRYISELEHKVQTLQTEATTLSAQLTLLQRDSVGLTNQNNELKF 497 (597)
Q Consensus 434 KR~KRILaNRESAaRSReRKKqYIeELE~KVq~LQtEN~tLsaQLtlLqre~~~L~aEN~ELK~ 497 (597)
||..|||+||+||..||+|||+|++-||.+++.|..||..|+++...|++++..|.+||.+||.
T Consensus 281 krqQRmIKNResA~~SRkKKKEy~~~Le~rLq~ll~Ene~Lk~ENatLk~qL~~l~~En~~~kv 344 (655)
T KOG4343|consen 281 KRQQRMIKNRESACQSRKKKKEYMLGLEARLQALLSENEQLKKENATLKRQLDELVSENQRLKV 344 (655)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhcCccccc
Confidence 7888999999999999999999999999999999999999999999999999999999999974
No 4
>PF07716 bZIP_2: Basic region leucine zipper; InterPro: IPR011700 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotes are proteins that contain a basic region mediating sequence-specific DNA-binding, followed by a leucine zipper region (see IPR002158 from INTERPRO), which is required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1NWQ_A 1H89_B 1H88_A 1GTW_B 2E43_A 1IO4_A 1GU4_B 2E42_A 1H8A_B 1GU5_B ....
Probab=99.02 E-value=1.2e-09 Score=85.81 Aligned_cols=53 Identities=38% Similarity=0.572 Sum_probs=48.7
Q ss_pred cChHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007579 431 TDPKRAKRILANRQSAARSKERKMRYISELEHKVQTLQTEATTLSAQLTLLQRD 484 (597)
Q Consensus 431 ~DpKR~KRILaNRESAaRSReRKKqYIeELE~KVq~LQtEN~tLsaQLtlLqre 484 (597)
.|+++.||. +||++|++||+||++|+.+||.+|..|+.+|..|..+|..|+++
T Consensus 2 ~~~~~~rR~-rNr~AA~r~R~rkk~~~~~le~~~~~L~~en~~L~~~i~~L~~E 54 (54)
T PF07716_consen 2 DEEKRERRE-RNREAARRSRQRKKQREEELEQEVQELEEENEQLRQEIAQLERE 54 (54)
T ss_dssp CHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 357788888 99999999999999999999999999999999999999988763
No 5
>KOG4005 consensus Transcription factor XBP-1 [Transcription]
Probab=99.01 E-value=1.9e-09 Score=108.32 Aligned_cols=75 Identities=27% Similarity=0.356 Sum_probs=71.1
Q ss_pred cChHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007579 431 TDPKRAKRILANRQSAARSKERKMRYISELEHKVQTLQTEATTLSAQLTLLQRDSVGLTNQNNELKFRLQAMEQQ 505 (597)
Q Consensus 431 ~DpKR~KRILaNRESAaRSReRKKqYIeELE~KVq~LQtEN~tLsaQLtlLqre~~~L~aEN~ELK~RLqaLEqQ 505 (597)
-++|-.||.|+||.+|+-+|.|||+.++|+|.+|..|..||..|..+...|++.+..|+.+|.+|..+|..+.+.
T Consensus 66 ~EEK~~RrKLKNRVAAQtaRDrKKaRm~eme~~i~dL~een~~L~~en~~Lr~~n~~L~~~n~el~~~le~~~~~ 140 (292)
T KOG4005|consen 66 WEEKVQRRKLKNRVAAQTARDRKKARMEEMEYEIKDLTEENEILQNENDSLRAINESLLAKNHELDSELELLRQE 140 (292)
T ss_pred HHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 367899999999999999999999999999999999999999999999999999999999999999999877655
No 6
>KOG3584 consensus cAMP response element binding protein and related transcription factors [Transcription]
Probab=98.80 E-value=6.8e-09 Score=106.55 Aligned_cols=52 Identities=29% Similarity=0.491 Sum_probs=49.0
Q ss_pred hHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007579 433 PKRAKRILANRQSAARSKERKMRYISELEHKVQTLQTEATTLSAQLTLLQRD 484 (597)
Q Consensus 433 pKR~KRILaNRESAaRSReRKKqYIeELE~KVq~LQtEN~tLsaQLtlLqre 484 (597)
.||.-|+++|||+|+..|.|||+|+..||.+|..|++.|+.|.++|..|+.-
T Consensus 290 rKRevRLmKNREAARECRRKKKEYVKCLENRVAVLENQNKaLIEELKtLKeL 341 (348)
T KOG3584|consen 290 RKREVRLMKNREAARECRRKKKEYVKCLENRVAVLENQNKALIEELKTLKEL 341 (348)
T ss_pred hHHHHHHHhhHHHHHHHHHhHhHHHHHHHhHHHHHhcccHHHHHHHHHHHHH
Confidence 5899999999999999999999999999999999999999999999888653
No 7
>KOG0709 consensus CREB/ATF family transcription factor [Transcription]
Probab=98.77 E-value=8.4e-09 Score=110.78 Aligned_cols=64 Identities=28% Similarity=0.394 Sum_probs=56.1
Q ss_pred cChHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007579 431 TDPKRAKRILANRQSAARSKERKMRYISELEHKVQTLQTEATTLSAQLTLLQRDSVGLTNQNNE 494 (597)
Q Consensus 431 ~DpKR~KRILaNRESAaRSReRKKqYIeELE~KVq~LQtEN~tLsaQLtlLqre~~~L~aEN~E 494 (597)
-+-||+||+|+|.+||+.||.|||+||+.||.+|....+||.+|..+|..|+.++..|..+.+.
T Consensus 248 riLKrvRRKIrNK~SAQESRrkKkeYid~LE~rv~~~taeNqeL~kkV~~Le~~N~sLl~qL~k 311 (472)
T KOG0709|consen 248 RILKRVRRKIRNKRSAQESRRKKKEYIDGLESRVSAFTAENQELQKKVEELELSNRSLLAQLKK 311 (472)
T ss_pred HHHHHHHHHHHhhhhhHHHHHhHhhHHHHHhhhhhhcccCcHHHHHHHHHHhhccHHHHHHHHH
Confidence 3569999999999999999999999999999999999999999999998887765555555443
No 8
>PF03131 bZIP_Maf: bZIP Maf transcription factor; InterPro: IPR004826 There are several different types of Maf transcription factors with different roles in the cell. MafG and MafH are small Mafs which lack a putative transactivation domain. They behave as transcriptional repressors when they dimerize among themselves. However they also serve as transcriptional activators by dimerizing with other (usually larger) basic-zipper proteins and recruiting them to specific DNA-binding sites. Maf transcription factors contain a conserved basic region leucine zipper (bZIP) domain, which mediates their dimerization and DNA binding property. Neural retina-specific leucine zipper proteins also belong to this family. Together with the basic region, the Maf extended homology region (EHR), conserved only within the Maf family, defines the DNA binding specific to Mafs. This structure enables Mafs to make a broader area of contact with DNA and to recognise longer DNA sequences. In particular, the two residues at the beginning of helix H2 are positioned to recognise the flanking region []. Small Maf proteins heterodimerize with Fos and may act as competitive repressors of the NF2-E2 transcription factor. In mouse, Maf1 may play an early role in axial patterning. Defects in these proteins are a cause of autosomal dominant retinitis pigmentosa. ; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus; PDB: 2KZ5_A 3A5T_A 1K1V_A 1SKN_P 2WT7_B 2WTY_B.
Probab=98.02 E-value=8.6e-08 Score=82.69 Aligned_cols=62 Identities=29% Similarity=0.440 Sum_probs=50.4
Q ss_pred cChHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007579 431 TDPKRAKRILANRQSAARSKERKMRYISELEHKVQTLQTEATTLSAQLTLLQRDSVGLTNQN 492 (597)
Q Consensus 431 ~DpKR~KRILaNRESAaRSReRKKqYIeELE~KVq~LQtEN~tLsaQLtlLqre~~~L~aEN 492 (597)
.+-|.+||.++||.+|+++|.||+.++.+||.++..|..+...|..++..+..+...+...+
T Consensus 27 ~~lK~~RRr~KNR~~A~~cR~rk~~~~~~Le~e~~~l~~~~~~L~~e~~~l~~e~~~lk~~~ 88 (92)
T PF03131_consen 27 AELKQRRRRLKNRGYAQNCRKRKLDQIEELEEEIEQLRQEIEQLQQELSELRQERDELKRKL 88 (92)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHCCCCCCCCH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34599999999999999999999999999999999888887777777776666554444333
No 9
>KOG0837 consensus Transcriptional activator of the JUN family [Transcription]
Probab=97.78 E-value=7.6e-05 Score=76.38 Aligned_cols=50 Identities=36% Similarity=0.537 Sum_probs=43.2
Q ss_pred HHHHH-HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007579 434 KRAKR-ILANRQSAARSKERKMRYISELEHKVQTLQTEATTLSAQLTLLQR 483 (597)
Q Consensus 434 KR~KR-ILaNRESAaRSReRKKqYIeELE~KVq~LQtEN~tLsaQLtlLqr 483 (597)
.|.+| .++||++|.+||.||.++|.+||.+|+.|..+|..|...+..|.+
T Consensus 205 ~kleRkrlrnreaa~Kcr~rkLdrisrLEdkv~~lk~~n~~L~~~l~~l~~ 255 (279)
T KOG0837|consen 205 IKLERKRLRNREAASKCRKRKLDRISRLEDKVKTLKIYNRDLASELSKLKE 255 (279)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHH
Confidence 34444 579999999999999999999999999999999999888876654
No 10
>KOG4571 consensus Activating transcription factor 4 [Transcription]
Probab=97.30 E-value=0.0015 Score=67.92 Aligned_cols=54 Identities=24% Similarity=0.321 Sum_probs=42.2
Q ss_pred cChHHHHHHH-HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007579 431 TDPKRAKRIL-ANRQSAARSKERKMRYISELEHKVQTLQTEATTLSAQLTLLQRD 484 (597)
Q Consensus 431 ~DpKR~KRIL-aNRESAaRSReRKKqYIeELE~KVq~LQtEN~tLsaQLtlLqre 484 (597)
+++|+.+|.- .|..+|.|.|+||++-.++|+.+++.|+.+|..|+.++..|+++
T Consensus 223 ~~~~~~~rkr~qnk~AAtRYRqKkRae~E~l~ge~~~Le~rN~~LK~qa~~lerE 277 (294)
T KOG4571|consen 223 TPEKKLRRKRQQNKAAATRYRQKKRAEKEALLGELEGLEKRNEELKDQASELERE 277 (294)
T ss_pred CchHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555543 45556999999999999999999999988888888887776664
No 11
>KOG4196 consensus bZIP transcription factor MafK [Transcription]
Probab=96.89 E-value=0.0073 Score=56.86 Aligned_cols=51 Identities=25% Similarity=0.341 Sum_probs=39.8
Q ss_pred ChHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007579 432 DPKRAKRILANRQSAARSKERKMRYISELEHKVQTLQTEATTLSAQLTLLQ 482 (597)
Q Consensus 432 DpKR~KRILaNRESAaRSReRKKqYIeELE~KVq~LQtEN~tLsaQLtlLq 482 (597)
-.|..||-|+||-.|+-.|-|+...-.+||.+...|..+...|+.+++.+.
T Consensus 51 rlKQrRRTLKNRGYA~sCR~KRv~Qk~eLE~~k~~L~qqv~~L~~e~s~~~ 101 (135)
T KOG4196|consen 51 RLKQRRRTLKNRGYAQSCRVKRVQQKHELEKEKAELQQQVEKLKEENSRLR 101 (135)
T ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 368899999999999999999999988888877766665555555444433
No 12
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=96.66 E-value=0.081 Score=48.90 Aligned_cols=80 Identities=18% Similarity=0.248 Sum_probs=42.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 007579 449 SKERKMRYISELEHKVQTLQTEATTLSAQLTLLQRDSVGLTNQNNELKFRLQAMEQQAQLRDALNEALTAEVRRLKVATQ 528 (597)
Q Consensus 449 SReRKKqYIeELE~KVq~LQtEN~tLsaQLtlLqre~~~L~aEN~ELK~RLqaLEqQaqLrdALnEaLkeEVqrLK~a~g 528 (597)
.|.|=+.+-++|+.++..|..++..|...+..|+.++..+..+...+..+...++.+..-....+..+++|+++|+..+.
T Consensus 46 ~~~r~~~~~e~l~~~~~~l~~d~~~l~~~~~rL~~~~~~~ere~~~~~~~~~~l~~~~~~~~~~~k~~kee~~klk~~~~ 125 (151)
T PF11559_consen 46 QRDRDMEQREDLSDKLRRLRSDIERLQNDVERLKEQLEELERELASAEEKERQLQKQLKSLEAKLKQEKEELQKLKNQLQ 125 (151)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444455555555555555555555555555555555555555555555555544444555555556666655544
No 13
>KOG3119 consensus Basic region leucine zipper transcription factor [Transcription]
Probab=96.62 E-value=0.011 Score=60.42 Aligned_cols=55 Identities=24% Similarity=0.448 Sum_probs=46.0
Q ss_pred cChHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007579 431 TDPKRAKRILANRQSAARSKERKMRYISELEHKVQTLQTEATTLSAQLTLLQRDS 485 (597)
Q Consensus 431 ~DpKR~KRILaNRESAaRSReRKKqYIeELE~KVq~LQtEN~tLsaQLtlLqre~ 485 (597)
.|++-..|.-+|=++|+|||.+.|+-..+...+|..|+.||..|+.+|..|+++.
T Consensus 191 ~~~~y~err~rNN~A~~kSR~~~k~~~~e~~~r~~~leken~~lr~~v~~l~~el 245 (269)
T KOG3119|consen 191 KDPEYKERRRRNNEAVRKSRDKRKQKEDEMAHRVAELEKENEALRTQVEQLKKEL 245 (269)
T ss_pred CCHHHHHHHHhhhHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555556666899999999999999999999999999999999998887766543
No 14
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=95.95 E-value=0.16 Score=43.27 Aligned_cols=51 Identities=24% Similarity=0.308 Sum_probs=44.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007579 455 RYISELEHKVQTLQTEATTLSAQLTLLQRDSVGLTNQNNELKFRLQAMEQQ 505 (597)
Q Consensus 455 qYIeELE~KVq~LQtEN~tLsaQLtlLqre~~~L~aEN~ELK~RLqaLEqQ 505 (597)
+-++.||.||+.+-..++.|..++..|+.++..|..+|.+|+...+.|.+.
T Consensus 4 E~l~~LE~ki~~aveti~~Lq~e~eeLke~n~~L~~e~~~L~~en~~L~~e 54 (72)
T PF06005_consen 4 ELLEQLEEKIQQAVETIALLQMENEELKEKNNELKEENEELKEENEQLKQE 54 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 457899999999999999999999999999999999999998888877644
No 15
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication. SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.
Probab=95.78 E-value=0.044 Score=49.66 Aligned_cols=50 Identities=30% Similarity=0.413 Sum_probs=45.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007579 455 RYISELEHKVQTLQTEATTLSAQLTLLQRDSVGLTNQNNELKFRLQAMEQ 504 (597)
Q Consensus 455 qYIeELE~KVq~LQtEN~tLsaQLtlLqre~~~L~aEN~ELK~RLqaLEq 504 (597)
..+.+||.++..|..+...|+.++..|..+++.|..||..|+.+|..+++
T Consensus 8 ~~l~~le~~l~~l~~~~~~LK~~~~~l~EEN~~L~~EN~~Lr~~l~~~~~ 57 (107)
T PF06156_consen 8 DRLDQLEQQLGQLLEELEELKKQLQELLEENARLRIENEHLRERLEELEQ 57 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 35789999999999999999999999999999999999999999988865
No 16
>PRK13169 DNA replication intiation control protein YabA; Reviewed
Probab=95.63 E-value=0.047 Score=49.95 Aligned_cols=49 Identities=29% Similarity=0.428 Sum_probs=44.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007579 456 YISELEHKVQTLQTEATTLSAQLTLLQRDSVGLTNQNNELKFRLQAMEQ 504 (597)
Q Consensus 456 YIeELE~KVq~LQtEN~tLsaQLtlLqre~~~L~aEN~ELK~RLqaLEq 504 (597)
.+.+||..+..|..+...|+.++..|..+++.|..||..|+.+|..+++
T Consensus 9 ~l~~le~~l~~l~~el~~LK~~~~el~EEN~~L~iEN~~Lr~~l~~~~~ 57 (110)
T PRK13169 9 ALDDLEQNLGVLLKELGALKKQLAELLEENTALRLENDKLRERLEELEA 57 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 4788999999999999999999999999999999999999999987743
No 17
>KOG4005 consensus Transcription factor XBP-1 [Transcription]
Probab=95.55 E-value=0.13 Score=53.14 Aligned_cols=84 Identities=21% Similarity=0.275 Sum_probs=68.4
Q ss_pred ccChHHHHHHHHhhHHHH--HHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007579 430 LTDPKRAKRILANRQSAA--RSKERKMRY-ISELEHKVQTLQTEATTLSAQLTLLQRDSVGLTNQNNELKFRLQAMEQQA 506 (597)
Q Consensus 430 l~DpKR~KRILaNRESAa--RSReRKKqY-IeELE~KVq~LQtEN~tLsaQLtlLqre~~~L~aEN~ELK~RLqaLEqQa 506 (597)
.++-||.|-.++---+-- +.|+-|++| |.+|+.+-+.|+.||..|+++...|-.++.+|..+..+|++.|..+.+++
T Consensus 69 K~~RrKLKNRVAAQtaRDrKKaRm~eme~~i~dL~een~~L~~en~~Lr~~n~~L~~~n~el~~~le~~~~~l~~~~~~~ 148 (292)
T KOG4005|consen 69 KVQRRKLKNRVAAQTARDRKKARMEEMEYEIKDLTEENEILQNENDSLRAINESLLAKNHELDSELELLRQELAELKQQQ 148 (292)
T ss_pred HHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhHHHH
Confidence 457788887766544333 344456665 67999999999999999999999999999999999999999999999998
Q ss_pred HHHHHHH
Q 007579 507 QLRDALN 513 (597)
Q Consensus 507 qLrdALn 513 (597)
+....+.
T Consensus 149 ~~~~~v~ 155 (292)
T KOG4005|consen 149 QHNTRVI 155 (292)
T ss_pred HHhhHHH
Confidence 8765544
No 18
>KOG3863 consensus bZIP transcription factor NRF1 [Transcription]
Probab=95.39 E-value=0.031 Score=63.12 Aligned_cols=63 Identities=25% Similarity=0.309 Sum_probs=50.1
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007579 434 KRAKRILANRQSAARSKERKMRYISELEHKVQTLQTEATTLSAQLTLLQRDSVGLTNQNNELKFRLQAME 503 (597)
Q Consensus 434 KR~KRILaNRESAaRSReRKKqYIeELE~KVq~LQtEN~tLsaQLtlLqre~~~L~aEN~ELK~RLqaLE 503 (597)
+-+||.=+||.+|++.|+||..-|.+||..|..|+.|-.+|..+- ..+..+..++|++|..|-
T Consensus 490 rDIRRRgKNkvAAQnCRKRKLd~I~nLE~ev~~l~~eKeqLl~Er-------~~~d~~L~~~kqqls~L~ 552 (604)
T KOG3863|consen 490 RDIRRRGKNKVAAQNCRKRKLDCILNLEDEVEKLQKEKEQLLRER-------DELDSTLGVMKQQLSELY 552 (604)
T ss_pred hccccccccchhccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHH
Confidence 446777799999999999999999999999999988877766543 344556677777777663
No 19
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=95.21 E-value=0.92 Score=46.55 Aligned_cols=75 Identities=17% Similarity=0.221 Sum_probs=46.2
Q ss_pred hHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHH
Q 007579 433 PKRAKRILANRQSAARSKERKMRYISELEHKVQTLQTEATTLSAQLTLLQR---------DSVGLTNQNNELKFRLQAME 503 (597)
Q Consensus 433 pKR~KRILaNRESAaRSReRKKqYIeELE~KVq~LQtEN~tLsaQLtlLqr---------e~~~L~aEN~ELK~RLqaLE 503 (597)
+|-++.+.+-.+.+.+.-.-++.-+++|+.+|..++.+...+++++..++. ++..|..|-..++.++..|+
T Consensus 30 ~~~l~k~~~e~e~~~~~~~~~~~e~e~le~qv~~~e~ei~~~r~r~~~~e~kl~~v~~~~e~~aL~~E~~~ak~r~~~le 109 (239)
T COG1579 30 RKALKKAKAELEALNKALEALEIELEDLENQVSQLESEIQEIRERIKRAEEKLSAVKDERELRALNIEIQIAKERINSLE 109 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555666666666666667777777777777777777777777666653 34445555555555555555
Q ss_pred HHHH
Q 007579 504 QQAQ 507 (597)
Q Consensus 504 qQaq 507 (597)
.++.
T Consensus 110 ~el~ 113 (239)
T COG1579 110 DELA 113 (239)
T ss_pred HHHH
Confidence 4433
No 20
>PRK10884 SH3 domain-containing protein; Provisional
Probab=95.02 E-value=0.27 Score=48.98 Aligned_cols=33 Identities=18% Similarity=0.202 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007579 484 DSVGLTNQNNELKFRLQAMEQQAQLRDALNEAL 516 (597)
Q Consensus 484 e~~~L~aEN~ELK~RLqaLEqQaqLrdALnEaL 516 (597)
....|..+|.+|+.+|+.+..+....++.++.+
T Consensus 133 ~~~~L~~~n~~L~~~l~~~~~~~~~l~~~~~~~ 165 (206)
T PRK10884 133 VINGLKEENQKLKNQLIVAQKKVDAANLQLDDK 165 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344444444444444433333333333333
No 21
>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89
Probab=94.96 E-value=0.4 Score=40.56 Aligned_cols=63 Identities=19% Similarity=0.259 Sum_probs=37.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007579 459 ELEHKVQTLQTEATTLSAQLTLLQRDSVGLTNQNNELKFRLQAMEQQAQLRDALNEALTAEVR 521 (597)
Q Consensus 459 ELE~KVq~LQtEN~tLsaQLtlLqre~~~L~aEN~ELK~RLqaLEqQaqLrdALnEaLkeEVq 521 (597)
.||..|..|+..+..+..++...+..+..|..|+...-.+|...-....-.-..+++|++|++
T Consensus 2 ~Lea~~~~Lr~rLd~~~rk~~~~~~~~k~L~~ERd~~~~~l~~a~~e~~~Lk~E~e~L~~el~ 64 (69)
T PF14197_consen 2 KLEAEIATLRNRLDSLTRKNSVHEIENKRLRRERDSAERQLGDAYEENNKLKEENEALRKELE 64 (69)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467777777777777777777777777777777666666655443333333333444444433
No 22
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=94.65 E-value=0.7 Score=40.61 Aligned_cols=51 Identities=20% Similarity=0.287 Sum_probs=39.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007579 455 RYISELEHKVQTLQTEATTLSAQLTLLQRDSVGLTNQNNELKFRLQAMEQQ 505 (597)
Q Consensus 455 qYIeELE~KVq~LQtEN~tLsaQLtlLqre~~~L~aEN~ELK~RLqaLEqQ 505 (597)
+-++.||.||+..-..+.-|..+|.+|..++..|..++..++..-..|+++
T Consensus 4 EvleqLE~KIqqAvdtI~LLqmEieELKekn~~L~~e~~~~~~~r~~L~~e 54 (79)
T PRK15422 4 EVFEKLEAKVQQAIDTITLLQMEIEELKEKNNSLSQEVQNAQHQREELERE 54 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence 357889999999888888888888888888888888877766665555544
No 23
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=94.58 E-value=2.1 Score=39.62 Aligned_cols=69 Identities=19% Similarity=0.260 Sum_probs=48.4
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007579 434 KRAKRILANRQSAARSKERKMRYISELEHKVQTLQTEATTLSAQLTLLQRDSVGLTNQNNELKFRLQAM 502 (597)
Q Consensus 434 KR~KRILaNRESAaRSReRKKqYIeELE~KVq~LQtEN~tLsaQLtlLqre~~~L~aEN~ELK~RLqaL 502 (597)
.+..|=+..|+.......++..-++.|+..++.|+.++..+..++..++.+...|..+++.+...+...
T Consensus 45 ~~~~r~~~~~e~l~~~~~~l~~d~~~l~~~~~rL~~~~~~~ere~~~~~~~~~~l~~~~~~~~~~~k~~ 113 (151)
T PF11559_consen 45 QQRDRDMEQREDLSDKLRRLRSDIERLQNDVERLKEQLEELERELASAEEKERQLQKQLKSLEAKLKQE 113 (151)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445556677777777777777777777777777777777777777777777666666666665555444
No 24
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=94.49 E-value=1.8 Score=41.33 Aligned_cols=73 Identities=16% Similarity=0.234 Sum_probs=55.4
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007579 434 KRAKRILANRQSAARSKERKMRYISELEHKVQTLQTEATTLSAQLTLLQRDSVGLTNQNNELKFRLQAMEQQA 506 (597)
Q Consensus 434 KR~KRILaNRESAaRSReRKKqYIeELE~KVq~LQtEN~tLsaQLtlLqre~~~L~aEN~ELK~RLqaLEqQa 506 (597)
+-......|++.|-+--+-+++.|+.|+.++..+..+...|...+..+..+...|..+-.+.+.++..|+...
T Consensus 31 reLe~~q~~~e~~~~daEn~k~eie~L~~el~~lt~el~~L~~EL~~l~sEk~~L~k~lq~~q~kv~eLE~~~ 103 (140)
T PF10473_consen 31 RELEMSQENKECLILDAENSKAEIETLEEELEELTSELNQLELELDTLRSEKENLDKELQKKQEKVSELESLN 103 (140)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3444466778888888888888888888888888888888888888887777777777777777777776553
No 25
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=94.45 E-value=0.74 Score=44.60 Aligned_cols=70 Identities=21% Similarity=0.196 Sum_probs=49.7
Q ss_pred hHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007579 433 PKRAKRILANRQSAARSKERKMRYISELEHKVQTLQTEATTLSAQLTLLQRDSVGLTNQNNELKFRLQAM 502 (597)
Q Consensus 433 pKR~KRILaNRESAaRSReRKKqYIeELE~KVq~LQtEN~tLsaQLtlLqre~~~L~aEN~ELK~RLqaL 502 (597)
.++++.+.+.+..-..-.......|.+++.-++.|+.|...|..++..++..+..|..||.+|-.|+...
T Consensus 115 ~~~l~~l~~~~~~L~~~~~~l~~~l~ek~k~~e~l~DE~~~L~l~~~~~e~k~~~l~~En~~Lv~Rwm~~ 184 (194)
T PF08614_consen 115 ERRLAELEAELAQLEEKIKDLEEELKEKNKANEILQDELQALQLQLNMLEEKLRKLEEENRELVERWMQR 184 (194)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555555555555555666677777777888888888888888888888888888888887776444
No 26
>PRK11637 AmiB activator; Provisional
Probab=94.12 E-value=1.3 Score=47.36 Aligned_cols=86 Identities=10% Similarity=0.044 Sum_probs=43.1
Q ss_pred ChHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007579 432 DPKRAKRILANRQSAARSKERKMRYISELEHKVQTLQTEATTLSAQLTLLQRDSVGLTNQNNELKFRLQAMEQQAQLRDA 511 (597)
Q Consensus 432 DpKR~KRILaNRESAaRSReRKKqYIeELE~KVq~LQtEN~tLsaQLtlLqre~~~L~aEN~ELK~RLqaLEqQaqLrdA 511 (597)
|-+-+..+...|......+..-..-..+|+.....++.+..+|..+....+.....|..+..++...|..|+.+..-...
T Consensus 168 d~~~l~~l~~~~~~L~~~k~~le~~~~~l~~~~~e~~~~k~~L~~~k~e~~~~l~~L~~~~~~~~~~l~~l~~~~~~L~~ 247 (428)
T PRK11637 168 RQETIAELKQTREELAAQKAELEEKQSQQKTLLYEQQAQQQKLEQARNERKKTLTGLESSLQKDQQQLSELRANESRLRD 247 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444444555555555555555555555555555555555555555555555555444444
Q ss_pred HHHHHH
Q 007579 512 LNEALT 517 (597)
Q Consensus 512 LnEaLk 517 (597)
+++.+.
T Consensus 248 ~I~~l~ 253 (428)
T PRK11637 248 SIARAE 253 (428)
T ss_pred HHHHHH
Confidence 444443
No 27
>PRK11637 AmiB activator; Provisional
Probab=93.98 E-value=0.95 Score=48.45 Aligned_cols=46 Identities=17% Similarity=0.165 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007579 457 ISELEHKVQTLQTEATTLSAQLTLLQRDSVGLTNQNNELKFRLQAM 502 (597)
Q Consensus 457 IeELE~KVq~LQtEN~tLsaQLtlLqre~~~L~aEN~ELK~RLqaL 502 (597)
+.+++.++..|+.+...+..++..++++...+..+-..|..+|..+
T Consensus 70 ~~~~~~~l~~l~~qi~~~~~~i~~~~~~i~~~~~ei~~l~~eI~~~ 115 (428)
T PRK11637 70 RASLLAQLKKQEEAISQASRKLRETQNTLNQLNKQIDELNASIAKL 115 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444444443333333333333333333333
No 28
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=93.85 E-value=2.4 Score=41.79 Aligned_cols=50 Identities=18% Similarity=0.232 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007579 450 KERKMRYISELEHKVQTLQTEATTLSAQLTLLQRDSVGLTNQNNELKFRL 499 (597)
Q Consensus 450 ReRKKqYIeELE~KVq~LQtEN~tLsaQLtlLqre~~~L~aEN~ELK~RL 499 (597)
....+..+++++.++..|+.+...+..++...++....+..++...+..|
T Consensus 58 ~~~~~~~~~~~~~r~~~l~~~i~~~~~~i~~~r~~l~~~~~~l~~~~~~l 107 (302)
T PF10186_consen 58 IQQLKREIEELRERLERLRERIERLRKRIEQKRERLEELRESLEQRRSRL 107 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444555555555555555555555555555444444444444433
No 29
>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89
Probab=93.85 E-value=0.63 Score=39.43 Aligned_cols=62 Identities=24% Similarity=0.209 Sum_probs=44.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 007579 466 TLQTEATTLSAQLTLLQRDSVGLTNQNNELKFRLQAMEQQAQLRDALNEALTAEVRRLKVAT 527 (597)
Q Consensus 466 ~LQtEN~tLsaQLtlLqre~~~L~aEN~ELK~RLqaLEqQaqLrdALnEaLkeEVqrLK~a~ 527 (597)
.|+.++.+|..++..+.+++.....+|+.|...=.....++...-..+..|++|++.|+..+
T Consensus 2 ~Lea~~~~Lr~rLd~~~rk~~~~~~~~k~L~~ERd~~~~~l~~a~~e~~~Lk~E~e~L~~el 63 (69)
T PF14197_consen 2 KLEAEIATLRNRLDSLTRKNSVHEIENKRLRRERDSAERQLGDAYEENNKLKEENEALRKEL 63 (69)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46777777777777777777777777777777666666666666666777777777777654
No 30
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=93.76 E-value=0.58 Score=46.78 Aligned_cols=73 Identities=21% Similarity=0.334 Sum_probs=53.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccC
Q 007579 456 YISELEHKVQTLQTEATTLSAQLTLLQRDSVGLTNQNNELKFRLQAMEQQAQLRDALNEALTAEVRRLKVATQEMAS 532 (597)
Q Consensus 456 YIeELE~KVq~LQtEN~tLsaQLtlLqre~~~L~aEN~ELK~RLqaLEqQaqLrdALnEaLkeEVqrLK~a~gEi~~ 532 (597)
-|++|+.--+.|..||..|...|..++..+..|..++..|+.++..+.+-++.- .+|.+|++.||..+..+-.
T Consensus 9 ~v~dL~~~n~~L~~en~kL~~~ve~~ee~na~L~~e~~~L~~q~~s~Qqal~~a----K~l~eEledLk~~~~~lEE 81 (193)
T PF14662_consen 9 CVEDLQLNNQKLADENAKLQRSVETAEEGNAQLAEEITDLRKQLKSLQQALQKA----KALEEELEDLKTLAKSLEE 81 (193)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHH
Confidence 467888888888888888888888888888888888888888887775444433 3445666677766665533
No 31
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=93.74 E-value=3.7 Score=39.20 Aligned_cols=76 Identities=17% Similarity=0.174 Sum_probs=34.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 007579 454 MRYISELEHKVQTLQTEATTLSAQLTLLQRDSVGLTNQNNELKFRLQAMEQQAQLRDALNEALTAEVRRLKVATQE 529 (597)
Q Consensus 454 KqYIeELE~KVq~LQtEN~tLsaQLtlLqre~~~L~aEN~ELK~RLqaLEqQaqLrdALnEaLkeEVqrLK~a~gE 529 (597)
+.+|..||+.++..+++...+.......++.+..|..+..++...+..|+..+.....-.+.|..+++.++..+.+
T Consensus 23 e~~v~~LEreLe~~q~~~e~~~~daEn~k~eie~L~~el~~lt~el~~L~~EL~~l~sEk~~L~k~lq~~q~kv~e 98 (140)
T PF10473_consen 23 EDHVESLERELEMSQENKECLILDAENSKAEIETLEEELEELTSELNQLELELDTLRSEKENLDKELQKKQEKVSE 98 (140)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555555555555444444444444444444444444444444444444433334444444444444444433
No 32
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=93.58 E-value=2 Score=45.06 Aligned_cols=81 Identities=20% Similarity=0.289 Sum_probs=54.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007579 446 AARSKERKMRYISELEHKVQTLQTEATTLSAQLTLLQRDSVGLTNQNNELKFRLQAMEQQAQLRDALNEALTAEVRRLKV 525 (597)
Q Consensus 446 AaRSReRKKqYIeELE~KVq~LQtEN~tLsaQLtlLqre~~~L~aEN~ELK~RLqaLEqQaqLrdALnEaLkeEVqrLK~ 525 (597)
...-..+..+.+.+||.+...|..|...|..+...|+++-...-.+.+.+..++..++++.....+..+.+..++++|+.
T Consensus 55 le~Ee~~l~~eL~~LE~e~~~l~~el~~le~e~~~l~~eE~~~~~~~n~~~~~l~~~~~e~~sl~~q~~~~~~~L~~L~k 134 (314)
T PF04111_consen 55 LEQEEEELLQELEELEKEREELDQELEELEEELEELDEEEEEYWREYNELQLELIEFQEERDSLKNQYEYASNQLDRLRK 134 (314)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34444555666677777777777777777777777766666666677777777777777766666667777777777775
Q ss_pred H
Q 007579 526 A 526 (597)
Q Consensus 526 a 526 (597)
.
T Consensus 135 t 135 (314)
T PF04111_consen 135 T 135 (314)
T ss_dssp -
T ss_pred c
Confidence 4
No 33
>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=93.47 E-value=1.6 Score=38.02 Aligned_cols=49 Identities=22% Similarity=0.301 Sum_probs=28.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007579 456 YISELEHKVQTLQTEATTLSAQLTLLQRDSVGLTNQNNELKFRLQAMEQ 504 (597)
Q Consensus 456 YIeELE~KVq~LQtEN~tLsaQLtlLqre~~~L~aEN~ELK~RLqaLEq 504 (597)
-++.||.||++.-.-++-|..+|.+|...+..|..|-.++....++|+.
T Consensus 5 v~ekLE~KiqqAvdTI~LLQmEieELKEknn~l~~e~q~~q~~reaL~~ 53 (79)
T COG3074 5 VFEKLEAKVQQAIDTITLLQMEIEELKEKNNSLSQEVQNAQHQREALER 53 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHH
Confidence 4567777777665555555555555555555555555555554444443
No 34
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=93.41 E-value=0.63 Score=53.16 Aligned_cols=43 Identities=26% Similarity=0.373 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007579 456 YISELEHKVQTLQTEATTLSAQLTLLQRDSVGLTNQNNELKFR 498 (597)
Q Consensus 456 YIeELE~KVq~LQtEN~tLsaQLtlLqre~~~L~aEN~ELK~R 498 (597)
.|..|+.+|+.|+.||..|...+..++++...|..+-.+++.+
T Consensus 423 ~i~~~~~~ve~l~~e~~~L~~~~ee~k~eie~L~~~l~~~~r~ 465 (652)
T COG2433 423 RIKKLEETVERLEEENSELKRELEELKREIEKLESELERFRRE 465 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3555666666666666666666666666666666555555443
No 35
>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore []. Most of the kinetochore/centromere functions appear to depend upon binding of the C-terminal part of the molecule, whereas the N-terminal part, here, may be a cytoplasmic player in controlling the function of microtubules and dynein [].
Probab=93.40 E-value=1.8 Score=45.71 Aligned_cols=73 Identities=18% Similarity=0.186 Sum_probs=48.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 007579 455 RYISELEHKVQTLQTEATTLSAQLTLLQRDSVGLTNQNNELKFRLQAMEQQAQLRDALNEALTAEVRRLKVAT 527 (597)
Q Consensus 455 qYIeELE~KVq~LQtEN~tLsaQLtlLqre~~~L~aEN~ELK~RLqaLEqQaqLrdALnEaLkeEVqrLK~a~ 527 (597)
+.+++-..++..|+.||..|...+..|++....|..+...=..++..||.|+.-.-..++.|..|+.++|.-+
T Consensus 53 qK~e~ek~e~s~LkREnq~l~e~c~~lek~rqKlshdlq~Ke~qv~~lEgQl~s~Kkqie~Leqelkr~KsEL 125 (307)
T PF10481_consen 53 QKVEEEKNEYSALKRENQSLMESCENLEKTRQKLSHDLQVKESQVNFLEGQLNSCKKQIEKLEQELKRCKSEL 125 (307)
T ss_pred HHHHHHhhhhhhhhhhhhhHHHHHHHHHHHHHHhhHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3345555666677777777777777777777777776666666667777776665566666666666666544
No 36
>TIGR02449 conserved hypothetical protein TIGR02449. Members of this family are small proteins, typically 73 amino acids in length, with single copies in each of several Proteobacteria, including Xylella fastidiosa, Pseudomonas aeruginosa, and Xanthomonas campestris. The function is unknown.
Probab=93.37 E-value=0.64 Score=39.37 Aligned_cols=46 Identities=22% Similarity=0.337 Sum_probs=28.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007579 457 ISELEHKVQTLQTEATTLSAQLTLLQRDSVGLTNQNNELKFRLQAM 502 (597)
Q Consensus 457 IeELE~KVq~LQtEN~tLsaQLtlLqre~~~L~aEN~ELK~RLqaL 502 (597)
|+.|-..++.|+.||..|++++..++.+...|...|..-+.|+++|
T Consensus 9 le~Li~~~~~L~~EN~~Lr~q~~~~~~ER~~L~ekne~Ar~rvEam 54 (65)
T TIGR02449 9 VEHLLEYLERLKSENRLLRAQEKTWREERAQLLEKNEQARQKVEAM 54 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555556666666666666666666666666666666555555555
No 37
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=93.27 E-value=1.6 Score=43.83 Aligned_cols=47 Identities=28% Similarity=0.314 Sum_probs=40.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007579 458 SELEHKVQTLQTEATTLSAQLTLLQRDSVGLTNQNNELKFRLQAMEQ 504 (597)
Q Consensus 458 eELE~KVq~LQtEN~tLsaQLtlLqre~~~L~aEN~ELK~RLqaLEq 504 (597)
.-|+.+|..|+.||..|..+...++.++..|.+++..|+.+|-..+.
T Consensus 98 q~L~~~i~~Lqeen~kl~~e~~~lk~~~~eL~~~~~~Lq~Ql~~~e~ 144 (193)
T PF14662_consen 98 QSLVAEIETLQEENGKLLAERDGLKKRSKELATEKATLQRQLCEFES 144 (193)
T ss_pred HHHHHHHHHHHHHHhHHHHhhhhHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 56888999999999999999999999999999999999888844433
No 38
>PRK09039 hypothetical protein; Validated
Probab=93.21 E-value=2.8 Score=44.51 Aligned_cols=36 Identities=22% Similarity=0.240 Sum_probs=13.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007579 464 VQTLQTEATTLSAQLTLLQRDSVGLTNQNNELKFRL 499 (597)
Q Consensus 464 Vq~LQtEN~tLsaQLtlLqre~~~L~aEN~ELK~RL 499 (597)
+..++.+.+....+|..|+++...|..+...|...|
T Consensus 125 L~~~k~~~se~~~~V~~L~~qI~aLr~Qla~le~~L 160 (343)
T PRK09039 125 LDSEKQVSARALAQVELLNQQIAALRRQLAALEAAL 160 (343)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333333333333333333
No 39
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=92.72 E-value=2.6 Score=39.20 Aligned_cols=38 Identities=34% Similarity=0.447 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007579 458 SELEHKVQTLQTEATTLSAQLTLLQRDSVGLTNQNNEL 495 (597)
Q Consensus 458 eELE~KVq~LQtEN~tLsaQLtlLqre~~~L~aEN~EL 495 (597)
-.||.++..|+.++..|.++-..+..+...|+.+|.++
T Consensus 26 r~~E~E~~~l~~el~~l~~~r~~l~~Eiv~l~~~~e~~ 63 (120)
T PF12325_consen 26 RRLEGELASLQEELARLEAERDELREEIVKLMEENEEL 63 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33455555555555555555555555555555555444
No 40
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=92.64 E-value=4.6 Score=41.16 Aligned_cols=80 Identities=15% Similarity=0.143 Sum_probs=67.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hc
Q 007579 450 KERKMRYISELEHKVQTLQTEATTLSAQLTLLQRDSVGLTNQNNELKFRLQAMEQQAQLRDALNEALTAEVRRLKVA-TQ 528 (597)
Q Consensus 450 ReRKKqYIeELE~KVq~LQtEN~tLsaQLtlLqre~~~L~aEN~ELK~RLqaLEqQaqLrdALnEaLkeEVqrLK~a-~g 528 (597)
=+..-.+|.|++.+...|..|-..+..+|-....+...|...-+.++............+-.....|+.+|.+++.. +|
T Consensus 27 ~e~ee~~L~e~~kE~~~L~~Er~~h~eeLrqI~~DIn~lE~iIkqa~~er~~~~~~i~r~~eey~~Lk~~in~~R~e~lg 106 (230)
T PF10146_consen 27 LENEEKCLEEYRKEMEELLQERMAHVEELRQINQDINTLENIIKQAESERNKRQEKIQRLYEEYKPLKDEINELRKEYLG 106 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 34455899999999999999999999999999999999999888888888777777666667788888999999988 65
Q ss_pred c
Q 007579 529 E 529 (597)
Q Consensus 529 E 529 (597)
.
T Consensus 107 l 107 (230)
T PF10146_consen 107 L 107 (230)
T ss_pred C
Confidence 4
No 41
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family. In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.
Probab=92.61 E-value=1.4 Score=43.04 Aligned_cols=51 Identities=27% Similarity=0.396 Sum_probs=40.2
Q ss_pred HHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007579 455 RYISELEH---KVQTLQTEATTLSAQLTLLQRDSVGLTNQNNELKFRLQAMEQQ 505 (597)
Q Consensus 455 qYIeELE~---KVq~LQtEN~tLsaQLtlLqre~~~L~aEN~ELK~RLqaLEqQ 505 (597)
.|+..|.. ..+.|+.||..|..++..|+.++..|..||..|+.++..+++.
T Consensus 87 ~fLq~l~~~~~~~~~~~~e~~~l~~e~~~l~~~~e~Le~e~~~L~~~~~~~~eD 140 (161)
T TIGR02894 87 SFLQNLKTTNPSDQALQKENERLKNQNESLQKRNEELEKELEKLRQRLSTIEED 140 (161)
T ss_pred HHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555554 3667788888888888888888888888888888888888665
No 42
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=92.58 E-value=3.4 Score=46.92 Aligned_cols=66 Identities=21% Similarity=0.261 Sum_probs=34.3
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007579 434 KRAKRILANRQSAARSKERKMRYISELEHKVQTLQTEATTLSAQLTLLQRDSVGLTNQNNELKFRL 499 (597)
Q Consensus 434 KR~KRILaNRESAaRSReRKKqYIeELE~KVq~LQtEN~tLsaQLtlLqre~~~L~aEN~ELK~RL 499 (597)
|....+++-..........-+..+++|+..+...+.++..|..+...+......|..|+..|+.++
T Consensus 150 kE~eeL~~~~~~Le~e~~~l~~~v~~l~~eL~~~~ee~e~L~~~~kel~~~~e~l~~E~~~L~~q~ 215 (546)
T PF07888_consen 150 KEKEELLKENEQLEEEVEQLREEVERLEAELEQEEEEMEQLKQQQKELTESSEELKEERESLKEQL 215 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445555555555555555555666655555555555555555555544444444444444433
No 43
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=92.57 E-value=2.9 Score=47.93 Aligned_cols=69 Identities=30% Similarity=0.378 Sum_probs=44.9
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH------------------------HHHHHHHHHHHHHHHHHHHH
Q 007579 435 RAKRILANRQSAARSKERKMRYISELEHKVQTLQTE------------------------ATTLSAQLTLLQRDSVGLTN 490 (597)
Q Consensus 435 R~KRILaNRESAaRSReRKKqYIeELE~KVq~LQtE------------------------N~tLsaQLtlLqre~~~L~a 490 (597)
+.+-.+.|.+.--+--..+...|.+||.+++.++.+ |..|+.+|+.|+..+..|..
T Consensus 102 qlqaqv~~ne~Ls~L~~EqEerL~ELE~~le~~~e~~~D~~kLLe~lqsdk~t~SRAlsQN~eLK~QL~Elq~~Fv~ltn 181 (617)
T PF15070_consen 102 QLQAQVENNEQLSRLNQEQEERLAELEEELERLQEQQEDRQKLLEQLQSDKATASRALSQNRELKEQLAELQDAFVKLTN 181 (617)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 333445555655555557777888888887766654 45667777777777777777
Q ss_pred HHHHHHHHHHHHH
Q 007579 491 QNNELKFRLQAME 503 (597)
Q Consensus 491 EN~ELK~RLqaLE 503 (597)
+|-+|+..|+.-.
T Consensus 182 e~~elt~~lq~Eq 194 (617)
T PF15070_consen 182 ENMELTSALQSEQ 194 (617)
T ss_pred hhhHhhHHHHHHH
Confidence 7766666665443
No 44
>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants. The function of this family is unknown.
Probab=92.55 E-value=1.5 Score=51.35 Aligned_cols=55 Identities=20% Similarity=0.346 Sum_probs=31.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------------HHHHHHHHHHHHHHHhcc-ccCC
Q 007579 479 TLLQRDSVGLTNQNNELKFRLQAMEQQAQLRDA---------------------LNEALTAEVRRLKVATQE-MASE 533 (597)
Q Consensus 479 tlLqre~~~L~aEN~ELK~RLqaLEqQaqLrdA---------------------LnEaLkeEVqrLK~a~gE-i~~~ 533 (597)
..|...+..+..||.-||-.+..+..++.+|.. -.-.|.+||+|||..+-- +|++
T Consensus 137 ~~l~~~l~~~eken~~Lkye~~~~~keleir~~E~~~~~~~ae~a~kqhle~vkkiakLEaEC~rLr~l~rk~lpgp 213 (769)
T PF05911_consen 137 EDLMARLESTEKENSSLKYELHVLSKELEIRNEEREYSRRAAEAASKQHLESVKKIAKLEAECQRLRALVRKKLPGP 213 (769)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCh
Confidence 334444455555555555555555555444442 155677999999987732 4444
No 45
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=92.50 E-value=1.3 Score=52.01 Aligned_cols=14 Identities=43% Similarity=0.581 Sum_probs=6.9
Q ss_pred ccCCCCCCCCCCCC
Q 007579 124 SLDSLPPLSPSPFR 137 (597)
Q Consensus 124 s~dsLpplsp~p~~ 137 (597)
||+.++||+|.-.+
T Consensus 114 sls~~qpL~~a~p~ 127 (1118)
T KOG1029|consen 114 SLSYSQPLPPAAPR 127 (1118)
T ss_pred CcCcCCCCCccccc
Confidence 44455555444444
No 46
>PRK10884 SH3 domain-containing protein; Provisional
Probab=92.43 E-value=2.3 Score=42.50 Aligned_cols=56 Identities=11% Similarity=0.151 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007579 455 RYISELEHKVQTLQTEATTLSAQLTLLQRDSVGLTNQNNELKFRLQAMEQQAQLRD 510 (597)
Q Consensus 455 qYIeELE~KVq~LQtEN~tLsaQLtlLqre~~~L~aEN~ELK~RLqaLEqQaqLrd 510 (597)
+...+|+.+++.+..+..+|..+...|++++..+.+++..|+.+++.+....+++=
T Consensus 118 ~~~~~l~~~~~~~~~~~~~L~~~n~~L~~~l~~~~~~~~~l~~~~~~~~~~~~~~w 173 (206)
T PRK10884 118 QRTAEMQQKVAQSDSVINGLKEENQKLKNQLIVAQKKVDAANLQLDDKQRTIIMQW 173 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444445455555555555555555555555554444443
No 47
>PF13747 DUF4164: Domain of unknown function (DUF4164)
Probab=92.42 E-value=3.1 Score=36.70 Aligned_cols=69 Identities=22% Similarity=0.307 Sum_probs=59.8
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007579 434 KRAKRILANRQSAARSKERKMRYISELEHKVQTLQTEATTLSAQLTLLQRDSVGLTNQNNELKFRLQAM 502 (597)
Q Consensus 434 KR~KRILaNRESAaRSReRKKqYIeELE~KVq~LQtEN~tLsaQLtlLqre~~~L~aEN~ELK~RLqaL 502 (597)
+|+.+.|.+=++|-.-|.-+..-..+||.+|+.|...-..|..++...+..+..|..-|.++..+|...
T Consensus 11 ~rL~~aid~LE~~v~~r~~~~~~~~~~e~ei~~l~~dr~rLa~eLD~~~ar~~~Le~~~~Evs~rL~~a 79 (89)
T PF13747_consen 11 TRLEAAIDRLEKAVDRRLERDRKRDELEEEIQRLDADRSRLAQELDQAEARANRLEEANREVSRRLDSA 79 (89)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 566666777777777777777777999999999999999999999999999999999999999999765
No 48
>PF10805 DUF2730: Protein of unknown function (DUF2730); InterPro: IPR020269 This entry represents a family of various hypothetical proteins. The proteins, which include HI1498 and Gp25, from phage Mu, are currently uncharacterised.
Probab=92.37 E-value=1.2 Score=40.05 Aligned_cols=53 Identities=28% Similarity=0.371 Sum_probs=35.6
Q ss_pred HHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007579 456 YISELEHKVQTLQTEATTL--SAQLTLLQRDSVGLTNQNNELKFRLQAMEQQAQL 508 (597)
Q Consensus 456 YIeELE~KVq~LQtEN~tL--saQLtlLqre~~~L~aEN~ELK~RLqaLEqQaqL 508 (597)
.+.+++.+++.++++...| +..+..|+-+.+++.-+-++|..+|+.++.+..+
T Consensus 43 ~~~~~~~Rl~~lE~~l~~LPt~~dv~~L~l~l~el~G~~~~l~~~l~~v~~~~~l 97 (106)
T PF10805_consen 43 RLDEHDRRLQALETKLEHLPTRDDVHDLQLELAELRGELKELSARLQGVSHQLDL 97 (106)
T ss_pred HHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 3444567777777777776 6677777777777777777777777777665443
No 49
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=92.33 E-value=4 Score=42.68 Aligned_cols=38 Identities=21% Similarity=0.237 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007579 460 LEHKVQTLQTEATTLSAQLTLLQRDSVGLTNQNNELKF 497 (597)
Q Consensus 460 LE~KVq~LQtEN~tLsaQLtlLqre~~~L~aEN~ELK~ 497 (597)
|..++..+..++..+++++..|+.+...+..+..+++.
T Consensus 214 lr~eL~~~~~~i~~~k~~l~el~~el~~l~~~i~~~~~ 251 (325)
T PF08317_consen 214 LRQELAEQKEEIEAKKKELAELQEELEELEEKIEELEE 251 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333333333333333333333
No 50
>PF02403 Seryl_tRNA_N: Seryl-tRNA synthetase N-terminal domain; InterPro: IPR015866 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the N-terminal domain of Seryl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Seryl-tRNA synthetase (6.1.1.11 from EC) exists as monomer and belongs to class IIa [].; GO: 0000166 nucleotide binding, 0004828 serine-tRNA ligase activity, 0005524 ATP binding, 0006434 seryl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3QO8_A 3QO5_A 3QO7_A 3QNE_A 3LSQ_A 3LSS_A 2DQ3_B 1SET_A 1SER_A 1SRY_B ....
Probab=92.30 E-value=2.6 Score=36.90 Aligned_cols=63 Identities=25% Similarity=0.419 Sum_probs=33.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 007579 460 LEHKVQTLQTEATTLSAQLTLLQR---DSVGLTNQNNELKFRLQAMEQQAQLRDALNEALTAEVRRLKVATQE 529 (597)
Q Consensus 460 LE~KVq~LQtEN~tLsaQLtlLqr---e~~~L~aEN~ELK~RLqaLEqQaqLrdALnEaLkeEVqrLK~a~gE 529 (597)
|..+++.|+.+-+.++.+|..+.. +...|..+-.+|+.++..++.+ ...+.+++..+-..++-
T Consensus 41 l~~~~e~lr~~rN~~sk~I~~~~~~~~~~~~l~~e~~~lk~~i~~le~~-------~~~~e~~l~~~l~~iPN 106 (108)
T PF02403_consen 41 LQQELEELRAERNELSKEIGKLKKAGEDAEELKAEVKELKEEIKELEEQ-------LKELEEELNELLLSIPN 106 (108)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHCHTTCCTHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHCTS--
T ss_pred HHHHHHHHHHHHhHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHcCCC
Confidence 344445555555555555555554 3555666666666666666554 33444555555444443
No 51
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=92.20 E-value=0.74 Score=51.22 Aligned_cols=48 Identities=13% Similarity=0.266 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHH
Q 007579 458 SELEHKVQTLQTEATTLSAQLTLLQRDS-VGLTNQNNELKFRLQAMEQQ 505 (597)
Q Consensus 458 eELE~KVq~LQtEN~tLsaQLtlLqre~-~~L~aEN~ELK~RLqaLEqQ 505 (597)
.+|+.+-+.|..||..|+++...+..+. ..|..+..+|..+.+.|..+
T Consensus 76 ~~l~~~N~~l~~eN~~L~~r~~~id~~i~~av~~~~~~~~~~~~ql~~~ 124 (472)
T TIGR03752 76 AKLISENEALKAENERLQKREQSIDQQIQQAVQSETQELTKEIEQLKSE 124 (472)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 4445555555555555554444333332 33445666666666655444
No 52
>PF05266 DUF724: Protein of unknown function (DUF724); InterPro: IPR007930 This family contains several uncharacterised proteins found exclusively in Arabidopsis thaliana.
Probab=92.02 E-value=5.8 Score=39.33 Aligned_cols=63 Identities=19% Similarity=0.211 Sum_probs=42.6
Q ss_pred cChHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007579 431 TDPKRAKRILANRQSAARSKERKMRYISELEHKVQTLQTEATTLSAQLTLLQRDSVGLTNQNN 493 (597)
Q Consensus 431 ~DpKR~KRILaNRESAaRSReRKKqYIeELE~KVq~LQtEN~tLsaQLtlLqre~~~L~aEN~ 493 (597)
-|=+-.+..|...-+-+..+.+++.+...||.++..-..+...+..++..|++....|..+..
T Consensus 86 FnV~~l~~RL~kLL~lk~~~~~~~e~~k~le~~~~~~~~~~~~~e~~i~~Le~ki~el~~~~~ 148 (190)
T PF05266_consen 86 FNVKFLRSRLNKLLSLKDDQEKLLEERKKLEKKIEEKEAELKELESEIKELEMKILELQRQAA 148 (190)
T ss_pred CccHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 355666777778888888888888888888888887755555555555555554444433333
No 53
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=91.99 E-value=2.9 Score=46.21 Aligned_cols=73 Identities=29% Similarity=0.333 Sum_probs=58.0
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007579 434 KRAKRILANRQSAARSKERKMRYISELEHKVQTLQTEATTLSAQLTLLQRDSVGLTNQNNELKFRLQAMEQQA 506 (597)
Q Consensus 434 KR~KRILaNRESAaRSReRKKqYIeELE~KVq~LQtEN~tLsaQLtlLqre~~~L~aEN~ELK~RLqaLEqQa 506 (597)
||++-+-++=+.-.++....++....||..++.|++++..|..++.....+...+...+..+..+|..|+.|.
T Consensus 38 ~~l~q~q~ei~~~~~~i~~~~~~~~kL~~~lk~~e~~i~~~~~ql~~s~~~l~~~~~~I~~~~~~l~~l~~q~ 110 (420)
T COG4942 38 KQLKQIQKEIAALEKKIREQQDQRAKLEKQLKSLETEIASLEAQLIETADDLKKLRKQIADLNARLNALEVQE 110 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHH
Confidence 5555554444444455555667778899999999999999999999999999999999999999999988776
No 54
>PF07989 Microtub_assoc: Microtubule associated; InterPro: IPR012943 Proteins with this domain associate with the spindle body during cell division [].
Probab=91.80 E-value=2.3 Score=36.58 Aligned_cols=58 Identities=22% Similarity=0.364 Sum_probs=43.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007579 457 ISELEHKVQTLQTEATTLSAQLTLLQRDSV--------GLTNQNNELKFRLQAMEQQAQLRDALNE 514 (597)
Q Consensus 457 IeELE~KVq~LQtEN~tLsaQLtlLqre~~--------~L~aEN~ELK~RLqaLEqQaqLrdALnE 514 (597)
+-+.|..+..|..||=.|+-+|-.|+.... .+..+|-+||..+..|..+++-+..+..
T Consensus 2 lrEqe~~i~~L~KENF~LKLrI~fLee~l~~~~~~~~~~~~keNieLKve~~~L~~el~~~~~~l~ 67 (75)
T PF07989_consen 2 LREQEEQIDKLKKENFNLKLRIYFLEERLQKLGPESIEELLKENIELKVEVESLKRELQEKKKLLK 67 (75)
T ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 457888999999999999999988887755 4567888888888887666554444333
No 55
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=91.63 E-value=3.6 Score=39.91 Aligned_cols=65 Identities=25% Similarity=0.322 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHH
Q 007579 458 SELEHKVQTLQTEATTLSAQLTLLQRDSVGLTNQNNELKFRLQAMEQQ-AQLRDALNEALTAEVRR 522 (597)
Q Consensus 458 eELE~KVq~LQtEN~tLsaQLtlLqre~~~L~aEN~ELK~RLqaLEqQ-aqLrdALnEaLkeEVqr 522 (597)
..|+.++..|..+...+..-+..|+-++..|..+++.|..++..|+.+ ..|.+-..+....|.++
T Consensus 126 ~~L~~~~~~l~~~l~ek~k~~e~l~DE~~~L~l~~~~~e~k~~~l~~En~~Lv~Rwm~~k~~eAe~ 191 (194)
T PF08614_consen 126 AQLEEKIKDLEEELKEKNKANEILQDELQALQLQLNMLEEKLRKLEEENRELVERWMQRKAQEAER 191 (194)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444444445555555555555555555433 33333333333344433
No 56
>PF04102 SlyX: SlyX; InterPro: IPR007236 The SlyX protein has no known function. It is short, less than 80 amino acids, and its gene is found close to the slyD gene. The SlyX protein has a conserved PPH(Y/W) motif at its C terminus. The protein may be a coiled-coil structure.; PDB: 3EFG_A.
Probab=91.57 E-value=0.84 Score=38.17 Aligned_cols=49 Identities=31% Similarity=0.273 Sum_probs=37.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007579 455 RYISELEHKVQTLQTEATTLSAQLTLLQRDSVGLTNQNNELKFRLQAME 503 (597)
Q Consensus 455 qYIeELE~KVq~LQtEN~tLsaQLtlLqre~~~L~aEN~ELK~RLqaLE 503 (597)
+.|.+||.++..++.-+..|...|...+++...|..+.+.|..||..++
T Consensus 4 ~Ri~~LE~~la~qe~~ie~Ln~~v~~Qq~~I~~L~~~l~~L~~rl~~~~ 52 (69)
T PF04102_consen 4 ERIEELEIKLAFQEDTIEELNDVVTEQQRQIDRLQRQLRLLRERLRELE 52 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4688999999999999999999988888888888888888888877765
No 57
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=91.55 E-value=3.7 Score=47.71 Aligned_cols=42 Identities=17% Similarity=0.199 Sum_probs=28.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007579 457 ISELEHKVQTLQTEATTLSAQLTLLQRDSVGLTNQNNELKFR 498 (597)
Q Consensus 457 IeELE~KVq~LQtEN~tLsaQLtlLqre~~~L~aEN~ELK~R 498 (597)
.+-|..+.++|+.|...|+.++...+.++..|+.|..+|+..
T Consensus 540 ~e~~r~r~~~lE~E~~~lr~elk~kee~~~~~e~~~~~lr~~ 581 (697)
T PF09726_consen 540 AESCRQRRRQLESELKKLRRELKQKEEQIRELESELQELRKY 581 (697)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344666777777777777777777777777777766666553
No 58
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=91.53 E-value=3.7 Score=40.37 Aligned_cols=79 Identities=16% Similarity=0.257 Sum_probs=44.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHH
Q 007579 456 YISELEHKVQTLQTEATTLSAQLTLLQ------RDSVGLTNQNNELKFRLQAMEQQAQL----RDALNEALTAEVRRLKV 525 (597)
Q Consensus 456 YIeELE~KVq~LQtEN~tLsaQLtlLq------re~~~L~aEN~ELK~RLqaLEqQaqL----rdALnEaLkeEVqrLK~ 525 (597)
-++.|+.+++.++.+...|..++..+. .+...+..+..+|+.++..|..++.. -....+.+++++..++.
T Consensus 70 ~~~~l~~~~~~~~~~i~~l~~~i~~~~~~r~~~~eR~~~l~~l~~l~~~~~~l~~el~~~~~~Dp~~i~~~~~~~~~~~~ 149 (188)
T PF03962_consen 70 KLEKLQKEIEELEKKIEELEEKIEEAKKGREESEEREELLEELEELKKELKELKKELEKYSENDPEKIEKLKEEIKIAKE 149 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHH
Confidence 344444444444444444444444443 22334445555555555555443321 12457788889999999
Q ss_pred HhccccCCC
Q 007579 526 ATQEMASES 534 (597)
Q Consensus 526 a~gEi~~~~ 534 (597)
++...+|+-
T Consensus 150 ~anrwTDNI 158 (188)
T PF03962_consen 150 AANRWTDNI 158 (188)
T ss_pred HHHHHHhhH
Confidence 998888764
No 59
>PRK09039 hypothetical protein; Validated
Probab=91.50 E-value=3.8 Score=43.52 Aligned_cols=44 Identities=16% Similarity=0.208 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007579 460 LEHKVQTLQTEATTLSAQLTLLQRDSVGLTNQNNELKFRLQAME 503 (597)
Q Consensus 460 LE~KVq~LQtEN~tLsaQLtlLqre~~~L~aEN~ELK~RLqaLE 503 (597)
.-.+|..|+.++..|++|+..|+.....++.+..+.+.+|+.|+
T Consensus 135 ~~~~V~~L~~qI~aLr~Qla~le~~L~~ae~~~~~~~~~i~~L~ 178 (343)
T PRK09039 135 ALAQVELLNQQIAALRRQLAALEAALDASEKRDRESQAKIADLG 178 (343)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555555555555555555555555555555555553
No 60
>COG4467 Regulator of replication initiation timing [Replication, recombination, and repair]
Probab=91.43 E-value=0.65 Score=43.05 Aligned_cols=46 Identities=26% Similarity=0.350 Sum_probs=41.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007579 456 YISELEHKVQTLQTEATTLSAQLTLLQRDSVGLTNQNNELKFRLQA 501 (597)
Q Consensus 456 YIeELE~KVq~LQtEN~tLsaQLtlLqre~~~L~aEN~ELK~RLqa 501 (597)
.+.+||..+-+|-.+...|++.+..|-.+++.|..||..|+.||..
T Consensus 9 ~v~~le~~l~~l~~el~~lK~~l~~lvEEN~~L~lENe~LR~RL~~ 54 (114)
T COG4467 9 QVDNLEEQLGVLLAELGGLKQHLGSLVEENTALRLENEKLRERLGE 54 (114)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhHHHHHHHhCC
Confidence 4688999999999999999999999999999999999999999876
No 61
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=91.38 E-value=7.8 Score=38.89 Aligned_cols=43 Identities=16% Similarity=0.218 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007579 460 LEHKVQTLQTEATTLSAQLTLLQRDSVGLTNQNNELKFRLQAM 502 (597)
Q Consensus 460 LE~KVq~LQtEN~tLsaQLtlLqre~~~L~aEN~ELK~RLqaL 502 (597)
|+.++..|+.|...|...+..+++....+..+..+|+.++..+
T Consensus 54 L~~e~~~l~~e~e~L~~~~~~l~~~v~~q~~el~~L~~qi~~~ 96 (251)
T PF11932_consen 54 LLAEYRQLEREIENLEVYNEQLERQVASQEQELASLEQQIEQI 96 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333333333333344444444444333
No 62
>KOG0243 consensus Kinesin-like protein [Cytoskeleton]
Probab=91.37 E-value=2.5 Score=51.02 Aligned_cols=84 Identities=24% Similarity=0.278 Sum_probs=42.7
Q ss_pred HHHhhHHHHHHHHH----HHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007579 439 ILANRQSAARSKER----KMRY------ISELEHKVQTLQTEATTLSAQLTLLQRDSVGLTNQNNELKFRLQAMEQQAQL 508 (597)
Q Consensus 439 ILaNRESAaRSReR----KKqY------IeELE~KVq~LQtEN~tLsaQLtlLqre~~~L~aEN~ELK~RLqaLEqQaqL 508 (597)
+|+++..|+|.|.- +.+| ..+...+++.|+.|...+..+|..++..+..+...++.|+.+++.++.+++.
T Consensus 415 rLK~dl~AaReKnGvyisee~y~~~e~e~~~~~~~ieele~el~~~~~~l~~~~e~~~~~~~~~~~l~~~~~~~k~~L~~ 494 (1041)
T KOG0243|consen 415 RLKRDLAAAREKNGVYISEERYTQEEKEKKEMAEQIEELEEELENLEKQLKDLTELYMNQLEIKELLKEEKEKLKSKLQN 494 (1041)
T ss_pred HHHHHHHHhHhhCceEechHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Confidence 45677778776531 2233 2233344445555555555555555555555555555555555555544444
Q ss_pred HHHHHHHHHHHHHH
Q 007579 509 RDALNEALTAEVRR 522 (597)
Q Consensus 509 rdALnEaLkeEVqr 522 (597)
.....+.+++|++.
T Consensus 495 ~~~el~~~~ee~~~ 508 (1041)
T KOG0243|consen 495 KNKELESLKEELQQ 508 (1041)
T ss_pred HHHHHHHHHHHHHH
Confidence 44444444444333
No 63
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=91.35 E-value=0.91 Score=50.59 Aligned_cols=44 Identities=18% Similarity=0.175 Sum_probs=37.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007579 456 YISELEHKVQTLQTEATTLSAQLTLLQRDSVGLTNQNNELKFRL 499 (597)
Q Consensus 456 YIeELE~KVq~LQtEN~tLsaQLtlLqre~~~L~aEN~ELK~RL 499 (597)
-++|||+++..|+.|...|.++...++++...|..||..|+.++
T Consensus 77 kasELEKqLaaLrqElq~~saq~~dle~KIkeLEaE~~~Lk~Ql 120 (475)
T PRK13729 77 TAAQMQKQYEEIRRELDVLNKQRGDDQRRIEKLGQDNAALAEQV 120 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHH
Confidence 45788999999988888888888888888888888888888777
No 64
>PF10224 DUF2205: Predicted coiled-coil protein (DUF2205); InterPro: IPR019357 This entry represents a highly conserved 100 residue region which is likely to have a coiled-coil structure. The exact function is unknown.
Probab=91.24 E-value=1.3 Score=38.84 Aligned_cols=48 Identities=19% Similarity=0.266 Sum_probs=43.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007579 458 SELEHKVQTLQTEATTLSAQLTLLQRDSVGLTNQNNELKFRLQAMEQQ 505 (597)
Q Consensus 458 eELE~KVq~LQtEN~tLsaQLtlLqre~~~L~aEN~ELK~RLqaLEqQ 505 (597)
++|..++..||.....|..+|...+.++..|..||..|...|..|...
T Consensus 19 ~~Li~ei~~LQ~sL~~L~~Rve~Vk~E~~kL~~EN~~Lq~YI~nLm~~ 66 (80)
T PF10224_consen 19 EELIQEILELQDSLEALSDRVEEVKEENEKLESENEYLQQYIGNLMSS 66 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 578888999999999999999999999999999999999999888544
No 65
>PRK00295 hypothetical protein; Provisional
Probab=91.08 E-value=1.5 Score=36.95 Aligned_cols=47 Identities=26% Similarity=0.165 Sum_probs=36.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007579 456 YISELEHKVQTLQTEATTLSAQLTLLQRDSVGLTNQNNELKFRLQAM 502 (597)
Q Consensus 456 YIeELE~KVq~LQtEN~tLsaQLtlLqre~~~L~aEN~ELK~RLqaL 502 (597)
.|.+||.++..++.-+..|...|...+++...|..+-+.|..||..+
T Consensus 6 Ri~~LE~kla~qE~tie~Ln~~v~~Qq~~I~~L~~ql~~L~~rl~~~ 52 (68)
T PRK00295 6 RVTELESRQAFQDDTIQALNDVLVEQQRVIERLQLQMAALIKRQEEM 52 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 38999999999999999998888888777766666666665555543
No 66
>TIGR02449 conserved hypothetical protein TIGR02449. Members of this family are small proteins, typically 73 amino acids in length, with single copies in each of several Proteobacteria, including Xylella fastidiosa, Pseudomonas aeruginosa, and Xanthomonas campestris. The function is unknown.
Probab=91.05 E-value=1.7 Score=36.88 Aligned_cols=46 Identities=15% Similarity=0.172 Sum_probs=29.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007579 457 ISELEHKVQTLQTEATTLSAQLTLLQRDSVGLTNQNNELKFRLQAM 502 (597)
Q Consensus 457 IeELE~KVq~LQtEN~tLsaQLtlLqre~~~L~aEN~ELK~RLqaL 502 (597)
+..||.||..|-.....|+.+...|..+...|..|+..|+.+++.-
T Consensus 2 L~~Le~kle~Li~~~~~L~~EN~~Lr~q~~~~~~ER~~L~ekne~A 47 (65)
T TIGR02449 2 LQALAAQVEHLLEYLERLKSENRLLRAQEKTWREERAQLLEKNEQA 47 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567777776666666666666666666666666666666655433
No 67
>PF12711 Kinesin-relat_1: Kinesin motor; InterPro: IPR024658 Kinesin [, , ] is a microtubule-associated force-producing protein that may play a role in organelle transport. The kinesin motor activity is directed toward the microtubule's plus end. Kinesin is an oligomeric complex composed of two heavy chains and two light chains. The maintenance of the quaternary structure does not require interchain disulphide bonds. The heavy chain is composed of three structural domains: a large globular N-terminal domain which is responsible for the motor activity of kinesin (it is known to hydrolyse ATP, to bind and move on microtubules), a central alpha-helical coiled coil domain that mediates the heavy chain dimerisation; and a small globular C-terminal domain which interacts with other proteins (such as the kinesin light chains), vesicles and membranous organelles. A number of proteins have been recently found that contain a domain similar to that of the kinesin 'motor' domain [, ]: Drosophila melanogaster claret segregational protein (ncd). Ncd is required for normal chromosomal segregation in meiosis, in females, and in early mitotic divisions of the embryo. The ncd motor activity is directed toward the microtubule's minus end. Homo sapiens CENP-E []. CENP-E is a protein that associates with kinetochores during chromosome congression, relocates to the spindle midzone at anaphase, and is quantitatively discarded at the end of the cell division. CENP-E is probably an important motor molecule in chromosome movement and/or spindle elongation. H. sapiens mitotic kinesin-like protein-1 (MKLP-1), a motor protein whose activity is directed toward the microtubule's plus end. Saccharomyces cerevisiae KAR3 protein, which is essential for nuclear fusion during mating. KAR3 may mediate microtubule sliding during nuclear fusion and possibly mitosis. S. cerevisiae CIN8 and KIP1 proteins which are required for the assembly of the mitotic spindle. Both proteins seem to interact with spindle microtubules to produce an outwardly directed force acting upon the poles. Emericella nidulans (Aspergillus nidulans) bimC, which plays an important role in nuclear division. A. nidulans klpA. Caenorhabditis elegans unc-104, which may be required for the transport of substances needed for neuronal cell differentiation. C. elegans osm-3. Xenopus laevis Eg5, which may be involved in mitosis. Arabidopsis thaliana KatA, KatB and katC. Chlamydomonas reinhardtii FLA10/KHP1 and KLP1. Both proteins seem to play a role in the rotation or twisting of the microtubules of the flagella. C. elegans hypothetical protein T09A5.2. Kinesin-like proteins KLP2 (or KIF15) also contain a kinesin 'motor' domain. They are involved in mitotic spindle assembly, playing a role in positioning spindle poles during mitosis, specifically at prometaphase []. This entry represents a domain of unknown function found in this type of kinesin-like proteins.
Probab=90.81 E-value=3.3 Score=36.84 Aligned_cols=59 Identities=20% Similarity=0.300 Sum_probs=41.0
Q ss_pred HHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007579 466 TLQTEATTLSAQLTLLQR------DSVGLTNQNNELKFRLQAMEQQAQLRDALNEALTAEVRRLKVA 526 (597)
Q Consensus 466 ~LQtEN~tLsaQLtlLqr------e~~~L~aEN~ELK~RLqaLEqQaqLrdALnEaLkeEVqrLK~a 526 (597)
.+..+|..|..+|..|+. +.+....||..|+.++..+..-. ...-.|++-+||..|+..
T Consensus 21 ~~~~e~~~L~eEI~~Lr~qve~nPevtr~A~EN~rL~ee~rrl~~f~--~~gerE~l~~eis~L~~~ 85 (86)
T PF12711_consen 21 YLEEENEALKEEIQLLREQVEHNPEVTRFAMENIRLREELRRLQSFY--VEGEREMLLQEISELRDQ 85 (86)
T ss_pred hhHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHH--HhhHHHHHHHHHHHHHhh
Confidence 455566666666666664 36677889999999887773322 445677888899888764
No 68
>PRK00736 hypothetical protein; Provisional
Probab=90.68 E-value=1.5 Score=36.88 Aligned_cols=47 Identities=21% Similarity=0.230 Sum_probs=33.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007579 455 RYISELEHKVQTLQTEATTLSAQLTLLQRDSVGLTNQNNELKFRLQA 501 (597)
Q Consensus 455 qYIeELE~KVq~LQtEN~tLsaQLtlLqre~~~L~aEN~ELK~RLqa 501 (597)
..|.+||.++..++.-+..|...|..-+++...|..+-+.|..||..
T Consensus 5 ~Ri~~LE~klafqe~tie~Ln~~v~~Qq~~i~~L~~ql~~L~~rl~~ 51 (68)
T PRK00736 5 ERLTELEIRVAEQEKTIEELSDQLAEQWKTVEQMRKKLDALTERFLS 51 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34889999999998888888888887777666655555555554443
No 69
>PRK04325 hypothetical protein; Provisional
Probab=90.67 E-value=1.4 Score=37.59 Aligned_cols=45 Identities=22% Similarity=0.118 Sum_probs=31.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007579 456 YISELEHKVQTLQTEATTLSAQLTLLQRDSVGLTNQNNELKFRLQ 500 (597)
Q Consensus 456 YIeELE~KVq~LQtEN~tLsaQLtlLqre~~~L~aEN~ELK~RLq 500 (597)
.|.+||.++..++.-+..|...|..-+++...|..+-+.|..||.
T Consensus 10 Ri~~LE~klAfQE~tIe~LN~vv~~Qq~~I~~L~~ql~~L~~rl~ 54 (74)
T PRK04325 10 RITELEIQLAFQEDLIDGLNATVARQQQTLDLLQAQLRLLYQQMR 54 (74)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 388888888888888888888887777666555555444444443
No 70
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=90.67 E-value=6.5 Score=44.82 Aligned_cols=51 Identities=14% Similarity=0.228 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007579 456 YISELEHKVQTLQTEATTLSAQLTLLQRDSVGLTNQNNELKFRLQAMEQQA 506 (597)
Q Consensus 456 YIeELE~KVq~LQtEN~tLsaQLtlLqre~~~L~aEN~ELK~RLqaLEqQa 506 (597)
-++.|+.+++.+......|..+...|..++..+.....+|...+..|.++.
T Consensus 186 e~e~L~~~~kel~~~~e~l~~E~~~L~~q~~e~~~ri~~LEedi~~l~qk~ 236 (546)
T PF07888_consen 186 EMEQLKQQQKELTESSEELKEERESLKEQLAEARQRIRELEEDIKTLTQKE 236 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555555555555555555555555555555555555555555554444
No 71
>PRK02793 phi X174 lysis protein; Provisional
Probab=90.66 E-value=1.4 Score=37.38 Aligned_cols=47 Identities=19% Similarity=0.229 Sum_probs=31.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007579 455 RYISELEHKVQTLQTEATTLSAQLTLLQRDSVGLTNQNNELKFRLQA 501 (597)
Q Consensus 455 qYIeELE~KVq~LQtEN~tLsaQLtlLqre~~~L~aEN~ELK~RLqa 501 (597)
+.|.+||.++..++.-+..|...|...+++...|..+-+.|+.||..
T Consensus 8 ~Ri~~LE~~lafQe~tIe~Ln~~v~~Qq~~I~~L~~~l~~L~~rl~~ 54 (72)
T PRK02793 8 ARLAELESRLAFQEITIEELNVTVTAHEMEMAKLRDHLRLLTEKLKA 54 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45778888888887777777777777666665555555555444443
No 72
>PF15030 DUF4527: Protein of unknown function (DUF4527)
Probab=90.58 E-value=5.5 Score=41.67 Aligned_cols=90 Identities=19% Similarity=0.169 Sum_probs=53.5
Q ss_pred cChHHHHHHHHhhHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007579 431 TDPKRAKRILANRQSAARSKERKMRYIS-ELEHKVQTLQTEATTLSAQLTLLQRDSVGLTNQNNELKFRLQAMEQQAQLR 509 (597)
Q Consensus 431 ~DpKR~KRILaNRESAaRSReRKKqYIe-ELE~KVq~LQtEN~tLsaQLtlLqre~~~L~aEN~ELK~RLqaLEqQaqLr 509 (597)
.|.|=.-|.|--+.--.++..|-+...- +|........---.+|..++.+|+++..+..-.-.=||.++..|.+.++-|
T Consensus 12 ed~rL~v~~LhHQvlTLqcQLRDQ~~ahreLQas~dEa~~L~~~L~~kl~eLqkk~~Ea~lAVtPLKak~AslV~kc~eR 91 (277)
T PF15030_consen 12 EDLRLRVQQLHHQVLTLQCQLRDQGSAHRELQASRDEATRLQDELQGKLEELQKKQHEANLAVTPLKAKLASLVQKCRER 91 (277)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHhhccchHHHHHHHHHHHHHHH
Confidence 3444444455555555555555554433 344433333333445666666677666666666667777888888887777
Q ss_pred HHHHHHHHHHH
Q 007579 510 DALNEALTAEV 520 (597)
Q Consensus 510 dALnEaLkeEV 520 (597)
+.|+..|..|+
T Consensus 92 n~Li~~llqel 102 (277)
T PF15030_consen 92 NRLITHLLQEL 102 (277)
T ss_pred HHHHHHHHHHH
Confidence 77776665555
No 73
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=90.49 E-value=12 Score=38.76 Aligned_cols=78 Identities=21% Similarity=0.296 Sum_probs=52.2
Q ss_pred hhccChHHHHHHHHhhHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007579 428 IALTDPKRAKRILANRQSAARSKERKMR----------YISELEHKVQTLQTEATTLSAQLTLLQRDSVGLTNQNNELKF 497 (597)
Q Consensus 428 lAl~DpKR~KRILaNRESAaRSReRKKq----------YIeELE~KVq~LQtEN~tLsaQLtlLqre~~~L~aEN~ELK~ 497 (597)
++..|-+...+.+..+..+.|.|..+-+ -+..|+.++++++....+|..++..|......|..+...|+.
T Consensus 52 ~e~e~le~qv~~~e~ei~~~r~r~~~~e~kl~~v~~~~e~~aL~~E~~~ak~r~~~le~el~~l~~~~~~l~~~i~~l~~ 131 (239)
T COG1579 52 IELEDLENQVSQLESEIQEIRERIKRAEEKLSAVKDERELRALNIEIQIAKERINSLEDELAELMEEIEKLEKEIEDLKE 131 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444556666666666666666665543 456777777777777777777777777777777777777777
Q ss_pred HHHHHHHH
Q 007579 498 RLQAMEQQ 505 (597)
Q Consensus 498 RLqaLEqQ 505 (597)
++..++..
T Consensus 132 ~~~~~e~~ 139 (239)
T COG1579 132 RLERLEKN 139 (239)
T ss_pred HHHHHHHH
Confidence 66665544
No 74
>PRK04863 mukB cell division protein MukB; Provisional
Probab=90.45 E-value=8.2 Score=48.49 Aligned_cols=94 Identities=15% Similarity=0.140 Sum_probs=48.9
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHH-------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007579 434 KRAKRILANRQSAARSKERKMRY-------------ISELEHKVQTLQTEATTLSAQLTLLQRDSVGLTNQNNELKFRLQ 500 (597)
Q Consensus 434 KR~KRILaNRESAaRSReRKKqY-------------IeELE~KVq~LQtEN~tLsaQLtlLqre~~~L~aEN~ELK~RLq 500 (597)
++++.+-+.++.|.+.+.-+.++ +++|+.+++..+.+...+..++..++.+...+..+..+|+.++.
T Consensus 321 ~rL~kLEkQaEkA~kyleL~ee~lr~q~ei~~l~~~LeELee~Lee~eeeLeeleeeleeleeEleelEeeLeeLqeqLa 400 (1486)
T PRK04863 321 EAESDLEQDYQAASDHLNLVQTALRQQEKIERYQADLEELEERLEEQNEVVEEADEQQEENEARAEAAEEEVDELKSQLA 400 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555666677776666544432 23444444444445555555555555555555555555555555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 007579 501 AMEQQAQLRDALNEALTAEVRRLKVAT 527 (597)
Q Consensus 501 aLEqQaqLrdALnEaLkeEVqrLK~a~ 527 (597)
.+.+...........+...+++|..+-
T Consensus 401 elqqel~elQ~el~q~qq~i~~Le~~~ 427 (1486)
T PRK04863 401 DYQQALDVQQTRAIQYQQAVQALERAK 427 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555544444444444444554444443
No 75
>PLN02678 seryl-tRNA synthetase
Probab=90.44 E-value=4.4 Score=44.83 Aligned_cols=104 Identities=14% Similarity=0.176 Sum_probs=63.4
Q ss_pred cChHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHH
Q 007579 431 TDPKRAKRILANRQSAARSKERKMRYISELEHKVQTLQTEATTLSAQLTLLQRDSVGLTN---QNNELKFRLQAMEQQAQ 507 (597)
Q Consensus 431 ~DpKR~KRILaNRESAaRSReRKKqYIeELE~KVq~LQtEN~tLsaQLtlLqre~~~L~a---EN~ELK~RLqaLEqQaq 507 (597)
.++..+++.|++|-.. .+ -...|.+|..+...|+.+...|+++...+.++...+.. +-.+|+.++..|.++..
T Consensus 13 ~~~~~v~~~l~~R~~~-~~---~id~il~ld~~~r~l~~~~e~lr~erN~~sk~I~~~k~~~~~~~~l~~~~~~Lk~ei~ 88 (448)
T PLN02678 13 GDPELIRESQRRRFAS-VE---LVDEVIALDKEWRQRQFELDSLRKEFNKLNKEVAKLKIAKEDATELIAETKELKKEIT 88 (448)
T ss_pred cCHHHHHHHHHhhCCC-HH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHH
Confidence 3566777778777521 11 13455555566555566666655555555555443221 22355556666666666
Q ss_pred HHHHHHHHHHHHHHHHHHHhccccCCCCCCc
Q 007579 508 LRDALNEALTAEVRRLKVATQEMASESDPSK 538 (597)
Q Consensus 508 LrdALnEaLkeEVqrLK~a~gEi~~~~~~~~ 538 (597)
-.+...+.+.+++..+...++.++.+..+.+
T Consensus 89 ~le~~~~~~~~~l~~~~~~iPNi~~~~VP~G 119 (448)
T PLN02678 89 EKEAEVQEAKAALDAKLKTIGNLVHDSVPVS 119 (448)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCCCCccCCCC
Confidence 6666677788888888888998888765433
No 76
>PF15290 Syntaphilin: Golgi-localised syntaxin-1-binding clamp
Probab=90.36 E-value=2.2 Score=45.14 Aligned_cols=62 Identities=27% Similarity=0.401 Sum_probs=36.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccC
Q 007579 457 ISELEHKVQTLQTEATTLSAQLTLLQRDSVGLTNQNNELKFRLQAMEQQAQLRDALNEALTAEVRRLKVATQEMAS 532 (597)
Q Consensus 457 IeELE~KVq~LQtEN~tLsaQLtlLqre~~~L~aEN~ELK~RLqaLEqQaqLrdALnEaLkeEVqrLK~a~gEi~~ 532 (597)
+.|-|.+++.=++|+.+|+.||..+++++. ......+|-|+-|+ | .++||+.||.++.-+-.
T Consensus 77 Lkes~~~l~dRetEI~eLksQL~RMrEDWI---------EEECHRVEAQLALK----E-ARkEIkQLkQvieTmrs 138 (305)
T PF15290_consen 77 LKESENRLHDRETEIDELKSQLARMREDWI---------EEECHRVEAQLALK----E-ARKEIKQLKQVIETMRS 138 (305)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHH----H-HHHHHHHHHHHHHHHHh
Confidence 445566666666777777777766666542 22233333344333 2 34689999998865543
No 77
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=90.34 E-value=5.2 Score=34.28 Aligned_cols=46 Identities=24% Similarity=0.286 Sum_probs=26.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007579 457 ISELEHKVQTLQTEATTLSAQLTLLQRDSVGLTNQNNELKFRLQAM 502 (597)
Q Consensus 457 IeELE~KVq~LQtEN~tLsaQLtlLqre~~~L~aEN~ELK~RLqaL 502 (597)
|..+-..+..|+.|+..|+.+...|..++..|..+|..|+..-...
T Consensus 13 i~~aveti~~Lq~e~eeLke~n~~L~~e~~~L~~en~~L~~e~~~~ 58 (72)
T PF06005_consen 13 IQQAVETIALLQMENEELKEKNNELKEENEELKEENEQLKQERNAW 58 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555666666666665555566666666666666555544
No 78
>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=90.28 E-value=4 Score=35.65 Aligned_cols=47 Identities=21% Similarity=0.299 Sum_probs=34.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007579 456 YISELEHKVQTLQTEATTLSAQLTLLQRDSVGLTNQNNELKFRLQAM 502 (597)
Q Consensus 456 YIeELE~KVq~LQtEN~tLsaQLtlLqre~~~L~aEN~ELK~RLqaL 502 (597)
-|.-|.-+|..|+.+|+.|..++..++.....|..||..||..-...
T Consensus 19 TI~LLQmEieELKEknn~l~~e~q~~q~~reaL~~eneqlk~e~~~W 65 (79)
T COG3074 19 TITLLQMEIEELKEKNNSLSQEVQNAQHQREALERENEQLKEEQNGW 65 (79)
T ss_pred HHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556667777777777777777777777788888888777765544
No 79
>PRK05431 seryl-tRNA synthetase; Provisional
Probab=90.23 E-value=5.9 Score=43.18 Aligned_cols=100 Identities=22% Similarity=0.306 Sum_probs=59.9
Q ss_pred ChHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHH
Q 007579 432 DPKRAKRILANRQSAARSKERKMRYISELEHKVQTLQTEATTLSAQLTLLQRDSVGLTNQN---NELKFRLQAMEQQAQL 508 (597)
Q Consensus 432 DpKR~KRILaNRESAaRSReRKKqYIeELE~KVq~LQtEN~tLsaQLtlLqre~~~L~aEN---~ELK~RLqaLEqQaqL 508 (597)
+|..+++.+++|.. . - =...|.+|..+...|+.+...|+++...+.++...+.... .+|+.++..|.++..-
T Consensus 10 n~~~v~~~l~~R~~-~--~--~vd~i~~ld~~~r~l~~~~~~lr~~rn~~sk~i~~~~~~~~~~~~l~~~~~~l~~~~~~ 84 (425)
T PRK05431 10 NPEAVKEALAKRGF-P--L--DVDELLELDEERRELQTELEELQAERNALSKEIGQAKRKGEDAEALIAEVKELKEEIKA 84 (425)
T ss_pred CHHHHHHHHHhcCC-c--c--cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcHHHHHHHHHHHHHHHHH
Confidence 66777777777731 0 0 1344555666666666666666666666665554432221 2455555555555555
Q ss_pred HHHHHHHHHHHHHHHHHHhccccCCCCC
Q 007579 509 RDALNEALTAEVRRLKVATQEMASESDP 536 (597)
Q Consensus 509 rdALnEaLkeEVqrLK~a~gEi~~~~~~ 536 (597)
.+...+.+.+++..+-..++.++.+..+
T Consensus 85 ~~~~~~~~~~~~~~~~~~iPN~~~~~vP 112 (425)
T PRK05431 85 LEAELDELEAELEELLLRIPNLPHDSVP 112 (425)
T ss_pred HHHHHHHHHHHHHHHHHhCCCCCCccCC
Confidence 5556667778888888888888777544
No 80
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=90.18 E-value=21 Score=35.50 Aligned_cols=56 Identities=20% Similarity=0.273 Sum_probs=31.3
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007579 434 KRAKRILANRQSAARSKERKMRYISELEHKVQTLQTEATTLSAQLTLLQRDSVGLT 489 (597)
Q Consensus 434 KR~KRILaNRESAaRSReRKKqYIeELE~KVq~LQtEN~tLsaQLtlLqre~~~L~ 489 (597)
...++.|++-+.-..+=..-+..+..++.++..|+.|+..|..++..++++...|.
T Consensus 72 ~eL~k~L~~y~kdK~~L~~~k~rl~~~ek~l~~Lk~e~evL~qr~~kle~ErdeL~ 127 (201)
T PF13851_consen 72 EELRKQLKNYEKDKQSLQNLKARLKELEKELKDLKWEHEVLEQRFEKLEQERDELY 127 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555556655555555555555555666666666666665555555555544444
No 81
>PRK02119 hypothetical protein; Provisional
Probab=89.99 E-value=1.7 Score=37.03 Aligned_cols=45 Identities=22% Similarity=0.091 Sum_probs=25.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007579 455 RYISELEHKVQTLQTEATTLSAQLTLLQRDSVGLTNQNNELKFRL 499 (597)
Q Consensus 455 qYIeELE~KVq~LQtEN~tLsaQLtlLqre~~~L~aEN~ELK~RL 499 (597)
..|.+||.++..++.-+..|...|+.-+++...|..+.+.|..||
T Consensus 9 ~Ri~~LE~rla~QE~tie~LN~~v~~Qq~~id~L~~ql~~L~~rl 53 (73)
T PRK02119 9 NRIAELEMKIAFQENLLEELNQALIEQQFVIDKMQVQLRYMANKL 53 (73)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345666666666666666666666665555544444444444433
No 82
>PF05266 DUF724: Protein of unknown function (DUF724); InterPro: IPR007930 This family contains several uncharacterised proteins found exclusively in Arabidopsis thaliana.
Probab=89.79 E-value=5.6 Score=39.42 Aligned_cols=20 Identities=30% Similarity=0.458 Sum_probs=7.5
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 007579 465 QTLQTEATTLSAQLTLLQRD 484 (597)
Q Consensus 465 q~LQtEN~tLsaQLtlLqre 484 (597)
..++.+...|..+|..|+++
T Consensus 127 ~~~e~~i~~Le~ki~el~~~ 146 (190)
T PF05266_consen 127 KELESEIKELEMKILELQRQ 146 (190)
T ss_pred hhHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333
No 83
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=89.78 E-value=13 Score=37.31 Aligned_cols=49 Identities=24% Similarity=0.257 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007579 457 ISELEHKVQTLQTEATTLSAQLTLLQRDSVGLTNQNNELKFRLQAMEQQ 505 (597)
Q Consensus 457 IeELE~KVq~LQtEN~tLsaQLtlLqre~~~L~aEN~ELK~RLqaLEqQ 505 (597)
+.++..+.+.|..+...|..++..|+..+..|......++.++..|+++
T Consensus 44 id~~~~e~~~L~~e~~~l~~e~e~L~~~~~~l~~~v~~q~~el~~L~~q 92 (251)
T PF11932_consen 44 IDQWDDEKQELLAEYRQLEREIENLEVYNEQLERQVASQEQELASLEQQ 92 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444444444444444444444444444433
No 84
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=89.71 E-value=4 Score=42.91 Aligned_cols=52 Identities=25% Similarity=0.400 Sum_probs=36.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007579 454 MRYISELEHKVQTLQTEATTLSAQLTLLQRDSVGLTNQNNELKFRLQAMEQQ 505 (597)
Q Consensus 454 KqYIeELE~KVq~LQtEN~tLsaQLtlLqre~~~L~aEN~ELK~RLqaLEqQ 505 (597)
..-+.+++.+++.|+.|...|.+++..|+++...|..|...|+.++..++++
T Consensus 42 ~~~~~~~~~el~~le~Ee~~l~~eL~~LE~e~~~l~~el~~le~e~~~l~~e 93 (314)
T PF04111_consen 42 EEDIEELEEELEKLEQEEEELLQELEELEKEREELDQELEELEEELEELDEE 93 (314)
T ss_dssp HH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445667777777777777777777777777777777777777777666433
No 85
>PHA02562 46 endonuclease subunit; Provisional
Probab=89.71 E-value=7.9 Score=42.06 Aligned_cols=31 Identities=19% Similarity=0.260 Sum_probs=11.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007579 460 LEHKVQTLQTEATTLSAQLTLLQRDSVGLTN 490 (597)
Q Consensus 460 LE~KVq~LQtEN~tLsaQLtlLqre~~~L~a 490 (597)
|+.++..|+.+...+..++..|..++..+..
T Consensus 363 l~~ei~~l~~~~~~~~~~l~~l~~~l~~~~~ 393 (562)
T PHA02562 363 VKAAIEELQAEFVDNAEELAKLQDELDKIVK 393 (562)
T ss_pred HHHHHHHHHhhhhchHHHHHHHHHHHHHHHH
Confidence 3333333333333333333333333333333
No 86
>KOG0239 consensus Kinesin (KAR3 subfamily) [Cytoskeleton]
Probab=89.66 E-value=4.6 Score=46.82 Aligned_cols=72 Identities=24% Similarity=0.360 Sum_probs=62.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHhc
Q 007579 457 ISELEHKVQTLQTEATTLSAQLTLLQRDSVGLTNQNNELKFRLQAMEQQAQLRD---ALNEALTAEVRRLKVATQ 528 (597)
Q Consensus 457 IeELE~KVq~LQtEN~tLsaQLtlLqre~~~L~aEN~ELK~RLqaLEqQaqLrd---ALnEaLkeEVqrLK~a~g 528 (597)
+..|..++..|+.+...|..++..+.+++.....++..+..+|..++..+.-+. .++..|..+|+.||-.+-
T Consensus 243 i~~l~~~l~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~l~~~~~e~~~r~kL~N~i~eLkGnIR 317 (670)
T KOG0239|consen 243 IQALQQELEELKAELKELNDQVSLLTREVQEALKESNTLQSDLESLEENLVEKKKEKEERRKLHNEILELKGNIR 317 (670)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCce
Confidence 888999999999999999999999999999999999999888888887776666 788889999999988773
No 87
>PRK04406 hypothetical protein; Provisional
Probab=89.65 E-value=1.9 Score=37.13 Aligned_cols=40 Identities=18% Similarity=0.150 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007579 456 YISELEHKVQTLQTEATTLSAQLTLLQRDSVGLTNQNNEL 495 (597)
Q Consensus 456 YIeELE~KVq~LQtEN~tLsaQLtlLqre~~~L~aEN~EL 495 (597)
.|.+||.++..++.-+..|...|...+++...|..+-+.|
T Consensus 12 Ri~~LE~~lAfQE~tIe~LN~~v~~Qq~~I~~L~~ql~~L 51 (75)
T PRK04406 12 RINDLECQLAFQEQTIEELNDALSQQQLLITKMQDQMKYV 51 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566666666666666666665555555444444333333
No 88
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=89.64 E-value=8.3 Score=44.96 Aligned_cols=83 Identities=13% Similarity=0.275 Sum_probs=55.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------------------HHHHHHHHHHHHHHH
Q 007579 444 QSAARSKERKMRYISELEHKVQTLQTEATTLSAQLTLLQRDSV----------------------GLTNQNNELKFRLQA 501 (597)
Q Consensus 444 ESAaRSReRKKqYIeELE~KVq~LQtEN~tLsaQLtlLqre~~----------------------~L~aEN~ELK~RLqa 501 (597)
...-++|++=|+-|..||+++...+..-..|.+||...++... .+...-++|..++..
T Consensus 477 ~~L~~aRq~DKq~l~~LEkrL~eE~~~R~~lEkQL~eErk~r~~ee~~aar~~~~~~~~r~e~~e~~r~r~~~lE~E~~~ 556 (697)
T PF09726_consen 477 QNLVQARQQDKQSLQQLEKRLAEERRQRASLEKQLQEERKARKEEEEKAARALAQAQATRQECAESCRQRRRQLESELKK 556 (697)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhhccccchhccchhHHHHHHHHHHHHHHHHH
Confidence 3456778888889999999998888888878777776664321 233444455555555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 007579 502 MEQQAQLRDALNEALTAEVRRLKVA 526 (597)
Q Consensus 502 LEqQaqLrdALnEaLkeEVqrLK~a 526 (597)
|..+++.++.....|..|++.|+..
T Consensus 557 lr~elk~kee~~~~~e~~~~~lr~~ 581 (697)
T PF09726_consen 557 LRRELKQKEEQIRELESELQELRKY 581 (697)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555666666666666667666654
No 89
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=89.63 E-value=3.4 Score=42.86 Aligned_cols=69 Identities=25% Similarity=0.300 Sum_probs=35.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Q 007579 455 RYISELEHKVQTLQTEATTLSAQLTLLQRDSVGLTNQNNELKFRLQAMEQQAQLRDALNEALTAEVRRLKVATQEM 530 (597)
Q Consensus 455 qYIeELE~KVq~LQtEN~tLsaQLtlLqre~~~L~aEN~ELK~RLqaLEqQaqLrdALnEaLkeEVqrLK~a~gEi 530 (597)
+..++|..|++.++.|+..|..+++.|+.++..+..+.+.|......|+. ....|.-||.+|+....++
T Consensus 135 e~~ee~kekl~E~~~EkeeL~~eleele~e~ee~~erlk~le~E~s~LeE-------~~~~l~~ev~~L~~r~~EL 203 (290)
T COG4026 135 EDYEELKEKLEELQKEKEELLKELEELEAEYEEVQERLKRLEVENSRLEE-------MLKKLPGEVYDLKKRWDEL 203 (290)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHhchhHHHHHHHHHHHh
Confidence 34466666677777777777666666555444443333333333333332 2333334555555555444
No 90
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=89.58 E-value=4.5 Score=35.71 Aligned_cols=46 Identities=24% Similarity=0.329 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007579 457 ISELEHKVQTLQTEATTLSAQLTLLQRDSVGLTNQNNELKFRLQAM 502 (597)
Q Consensus 457 IeELE~KVq~LQtEN~tLsaQLtlLqre~~~L~aEN~ELK~RLqaL 502 (597)
|.=|.-+|..|+.+|..|..++..+......|..+|..||......
T Consensus 20 I~LLqmEieELKekn~~L~~e~~~~~~~r~~L~~en~qLk~E~~~W 65 (79)
T PRK15422 20 ITLLQMEIEELKEKNNSLSQEVQNAQHQREELERENNHLKEQQNGW 65 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence 3344445555555555555555555555555666666666554444
No 91
>KOG0982 consensus Centrosomal protein Nuf [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=89.45 E-value=5.1 Score=44.66 Aligned_cols=78 Identities=23% Similarity=0.229 Sum_probs=56.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHH-------------HH
Q 007579 454 MRYISELEHKVQTLQTEATTLSAQLTLLQRDSVGLTNQNNELKFRLQAMEQQAQ--------LRD-------------AL 512 (597)
Q Consensus 454 KqYIeELE~KVq~LQtEN~tLsaQLtlLqre~~~L~aEN~ELK~RLqaLEqQaq--------Lrd-------------AL 512 (597)
--.++.|+.+++.|+.||+.|+..++.|...+..|..+...+..+|+++..|+. +-+ .|
T Consensus 296 sle~Enlqmr~qqleeentelRs~~arlksl~dklaee~qr~sd~LE~lrlql~~eq~l~~rm~d~Lrrfq~ekeatqEL 375 (502)
T KOG0982|consen 296 SLEKENLQMRDQQLEEENTELRSLIARLKSLADKLAEEDQRSSDLLEALRLQLICEQKLRVRMNDILRRFQEEKEATQEL 375 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHH
Confidence 345678889999999999999999999999888888887766666665533311 111 24
Q ss_pred HHHHHHHHHHHHHHhcccc
Q 007579 513 NEALTAEVRRLKVATQEMA 531 (597)
Q Consensus 513 nEaLkeEVqrLK~a~gEi~ 531 (597)
.+-|.+|+++|+.-.....
T Consensus 376 ieelrkelehlr~~kl~~a 394 (502)
T KOG0982|consen 376 IEELRKELEHLRRRKLVLA 394 (502)
T ss_pred HHHHHHHHHHHHHHHHHhh
Confidence 6677778888877665543
No 92
>PF08232 Striatin: Striatin family; InterPro: IPR013258 This domain is associated with the N terminus of striatin. Striatin is an intracellular protein which has a caveolin-binding motif, a coiled-coil structure, a calmodulin-binding site, and a WD (IPR001680 from INTERPRO) repeat domain []. It acts as a scaffold protein [] and is involved in signalling pathways [, ].
Probab=89.36 E-value=2.6 Score=39.47 Aligned_cols=62 Identities=18% Similarity=0.250 Sum_probs=47.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 007579 468 QTEATTLSAQLTLLQRDSVGLTNQNNELKFRLQAMEQQAQLRDALNEALTAEVRRLKVATQE 529 (597)
Q Consensus 468 QtEN~tLsaQLtlLqre~~~L~aEN~ELK~RLqaLEqQaqLrdALnEaLkeEVqrLK~a~gE 529 (597)
.-...-|..+-+.++++...+..|-.||+.||..||.+..-.+.+++-|..-|.-|..++-+
T Consensus 3 pGVl~fLQ~Ew~r~ErdR~~WeiERaEmkarIa~LEGE~r~~e~l~~dL~rrIkMLE~aLkq 64 (134)
T PF08232_consen 3 PGVLHFLQTEWHRFERDRNQWEIERAEMKARIAFLEGERRGQENLKKDLKRRIKMLEYALKQ 64 (134)
T ss_pred hHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445567777778888888899999999999999988888888877777777666666644
No 93
>PF08172 CASP_C: CASP C terminal; InterPro: IPR012955 This domain is the C-terminal region of the CASP family of proteins. These are Golgi membrane proteins which are thought to have a role in vesicle transport [].; GO: 0006891 intra-Golgi vesicle-mediated transport, 0030173 integral to Golgi membrane
Probab=89.23 E-value=3.8 Score=42.13 Aligned_cols=38 Identities=21% Similarity=0.325 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007579 489 TNQNNELKFRLQAMEQQAQLRDALNEALTAEVRRLKVA 526 (597)
Q Consensus 489 ~aEN~ELK~RLqaLEqQaqLrdALnEaLkeEVqrLK~a 526 (597)
+.+-..+|.|..+||+++.........|+.||+.|+.+
T Consensus 85 tsQRDRFR~Rn~ELE~elr~~~~~~~~L~~Ev~~L~~D 122 (248)
T PF08172_consen 85 TSQRDRFRQRNAELEEELRKQQQTISSLRREVESLRAD 122 (248)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445556666666666666666666666666666655
No 94
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=89.19 E-value=17 Score=36.86 Aligned_cols=64 Identities=23% Similarity=0.282 Sum_probs=33.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHh
Q 007579 464 VQTLQTEATTLSAQLTLLQRDSVGLTNQNNELKFRLQAMEQQAQ----LRDALNEALTAEVRRLKVAT 527 (597)
Q Consensus 464 Vq~LQtEN~tLsaQLtlLqre~~~L~aEN~ELK~RLqaLEqQaq----LrdALnEaLkeEVqrLK~a~ 527 (597)
+..+..|+..++.++..|+.+...|...|..|..+|..++.+.. ........|..|+..|+..+
T Consensus 211 ~~~~~~E~~~~r~~~~~l~~el~~l~~~~~~Le~~l~~le~~~~~~~~~~~~~i~~le~el~~l~~~~ 278 (312)
T PF00038_consen 211 LESAKEELKELRRQIQSLQAELESLRAKNASLERQLRELEQRLDEEREEYQAEIAELEEELAELREEM 278 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cchhHhHHHHHHhhhhHhhhhhhccccchhhhhhhHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHH
Confidence 34455566666666666666666666666666666665544322 12233344444454444443
No 95
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=89.01 E-value=6.4 Score=45.05 Aligned_cols=46 Identities=22% Similarity=0.391 Sum_probs=39.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007579 454 MRYISELEHKVQTLQTEATTLSAQLTLLQRDSVGLTNQNNELKFRL 499 (597)
Q Consensus 454 KqYIeELE~KVq~LQtEN~tLsaQLtlLqre~~~L~aEN~ELK~RL 499 (597)
+.|+.+++.+.+.+......|..+++.-+.++..|..+|.+||.++
T Consensus 279 ~~y~~~~~~k~~~~~~~l~~l~~Eie~kEeE~e~lq~~~d~Lk~~I 324 (581)
T KOG0995|consen 279 QAYVSQMKSKKQHMEKKLEMLKSEIEEKEEEIEKLQKENDELKKQI 324 (581)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5688888888888888888888888888888888888888888776
No 96
>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore []. Most of the kinetochore/centromere functions appear to depend upon binding of the C-terminal part of the molecule, whereas the N-terminal part, here, may be a cytoplasmic player in controlling the function of microtubules and dynein [].
Probab=89.01 E-value=8 Score=41.09 Aligned_cols=106 Identities=16% Similarity=0.229 Sum_probs=55.1
Q ss_pred HHHhhhcchHHHHhhhccChHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHH
Q 007579 414 AELKKIMANEKLAEIALTDPKRAKRILANRQSAARSKERKMRYISELEHKVQ-------TLQTEATTLSAQLTLLQRDSV 486 (597)
Q Consensus 414 ~E~KKim~~ekLaElAl~DpKR~KRILaNRESAaRSReRKKqYIeELE~KVq-------~LQtEN~tLsaQLtlLqre~~ 486 (597)
+|-|..++.-.|..| .-|..+=+--.+-|.-|+=.|+-||.-++ .-..|.+.|..+...|-..+.
T Consensus 6 eEWKeGL~~~aLqKI--------qelE~QldkLkKE~qQrQfQleSlEAaLqKQKqK~e~ek~e~s~LkREnq~l~e~c~ 77 (307)
T PF10481_consen 6 EEWKEGLPTRALQKI--------QELEQQLDKLKKERQQRQFQLESLEAALQKQKQKVEEEKNEYSALKRENQSLMESCE 77 (307)
T ss_pred hHHhccCCHHHHHHH--------HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhHHHHHH
Confidence 345555555554433 33333333344445555556666664333 233344445555555555555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 007579 487 GLTNQNNELKFRLQAMEQQAQLRDALNEALTAEVRRLKVAT 527 (597)
Q Consensus 487 ~L~aEN~ELK~RLqaLEqQaqLrdALnEaLkeEVqrLK~a~ 527 (597)
.|...+..|...|+.-|.++...++.+...++.|++|...+
T Consensus 78 ~lek~rqKlshdlq~Ke~qv~~lEgQl~s~Kkqie~Leqel 118 (307)
T PF10481_consen 78 NLEKTRQKLSHDLQVKESQVNFLEGQLNSCKKQIEKLEQEL 118 (307)
T ss_pred HHHHHHHHhhHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55555555555555556666666666666666665555444
No 97
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=89.00 E-value=7.6 Score=36.17 Aligned_cols=48 Identities=21% Similarity=0.390 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHH
Q 007579 458 SELEHKVQTLQTEATTLSAQLTLLQRDSVGL---TNQNNELKFRLQAMEQQ 505 (597)
Q Consensus 458 eELE~KVq~LQtEN~tLsaQLtlLqre~~~L---~aEN~ELK~RLqaLEqQ 505 (597)
.-|..++..|+.+-..|..+|..|..++..+ ..+...|+.+++.|+.+
T Consensus 33 ~~l~~el~~l~~~r~~l~~Eiv~l~~~~e~~~~~~~~~~~L~~el~~l~~r 83 (120)
T PF12325_consen 33 ASLQEELARLEAERDELREEIVKLMEENEELRALKKEVEELEQELEELQQR 83 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444455555555555555444444333 33444555555555443
No 98
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=88.63 E-value=19 Score=35.64 Aligned_cols=41 Identities=15% Similarity=0.193 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007579 447 ARSKERKMRYISELEHKVQTLQTEATTLSAQLTLLQRDSVG 487 (597)
Q Consensus 447 aRSReRKKqYIeELE~KVq~LQtEN~tLsaQLtlLqre~~~ 487 (597)
+.-..+++..+..|+.+++.+..++..++.++..++.....
T Consensus 62 ~~~~~~~~~r~~~l~~~i~~~~~~i~~~r~~l~~~~~~l~~ 102 (302)
T PF10186_consen 62 KREIEELRERLERLRERIERLRKRIEQKRERLEELRESLEQ 102 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555555556666665555555555555555444333
No 99
>PF02183 HALZ: Homeobox associated leucine zipper; InterPro: IPR003106 This region is a plant specific leucine zipper that is always found associated with a homeobox []. ; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=88.50 E-value=1.4 Score=34.76 Aligned_cols=39 Identities=21% Similarity=0.359 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007579 466 TLQTEATTLSAQLTLLQRDSVGLTNQNNELKFRLQAMEQ 504 (597)
Q Consensus 466 ~LQtEN~tLsaQLtlLqre~~~L~aEN~ELK~RLqaLEq 504 (597)
+|+.+...|++....|..++..|..||..|+..+..|..
T Consensus 2 QlE~Dy~~LK~~yd~Lk~~~~~L~~E~~~L~aev~~L~~ 40 (45)
T PF02183_consen 2 QLERDYDALKASYDSLKAEYDSLKKENEKLRAEVQELKE 40 (45)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555556666666666666666677766666666543
No 100
>PRK00846 hypothetical protein; Provisional
Probab=88.43 E-value=2.7 Score=36.68 Aligned_cols=48 Identities=19% Similarity=0.106 Sum_probs=29.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007579 455 RYISELEHKVQTLQTEATTLSAQLTLLQRDSVGLTNQNNELKFRLQAM 502 (597)
Q Consensus 455 qYIeELE~KVq~LQtEN~tLsaQLtlLqre~~~L~aEN~ELK~RLqaL 502 (597)
+.|.+||.++...+.-...|...|+..++....|..+-+.|+.||.++
T Consensus 13 ~Ri~~LE~rlAfQe~tIe~LN~~v~~qq~~I~~L~~ql~~L~~rL~~~ 60 (77)
T PRK00846 13 ARLVELETRLSFQEQALTELSEALADARLTGARNAELIRHLLEDLGKV 60 (77)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 456777777777777777777776666665555555555555444443
No 101
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=88.10 E-value=15 Score=45.24 Aligned_cols=89 Identities=16% Similarity=0.276 Sum_probs=45.1
Q ss_pred hhHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHH
Q 007579 442 NRQSAARSKERKMRY-ISELEHKVQTLQTEATTLSAQLTLLQRDSVGLTNQN---NELKFRLQAMEQQAQLRDALNEALT 517 (597)
Q Consensus 442 NRESAaRSReRKKqY-IeELE~KVq~LQtEN~tLsaQLtlLqre~~~L~aEN---~ELK~RLqaLEqQaqLrdALnEaLk 517 (597)
+|..+.|-+.+-.+- ++.|+..++.+..+.+.|..+|..++......+..+ ++++.+++.|+.+.- ++..++++
T Consensus 806 e~~~~lr~~~~~l~~~l~~~~~~~k~~~~~~~~l~~~i~~~E~~~~k~~~d~~~l~~~~~~ie~l~kE~e--~~qe~~~K 883 (1293)
T KOG0996|consen 806 ERVRKLRERIPELENRLEKLTASVKRLAELIEYLESQIAELEAAVLKKVVDKKRLKELEEQIEELKKEVE--ELQEKAAK 883 (1293)
T ss_pred HHHHHHHHhhHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCcHHHHHHHHHHHHHHHHHHH--HHHHhhhH
Confidence 344444444444443 555555566665556666666666655533333333 333444555544422 11144455
Q ss_pred -HHHHHHHHHhccccC
Q 007579 518 -AEVRRLKVATQEMAS 532 (597)
Q Consensus 518 -eEVqrLK~a~gEi~~ 532 (597)
++|..|+..+-.|.+
T Consensus 884 k~~i~~lq~~i~~i~~ 899 (1293)
T KOG0996|consen 884 KARIKELQNKIDEIGG 899 (1293)
T ss_pred HHHHHHHHHHHHHhhc
Confidence 667777776666544
No 102
>KOG1414 consensus Transcriptional activator FOSB/c-Fos and related bZIP transcription factors [Transcription]
Probab=88.05 E-value=0.025 Score=60.46 Aligned_cols=54 Identities=31% Similarity=0.360 Sum_probs=46.7
Q ss_pred cChHHHHHHHHhhHHHHH---HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHH
Q 007579 431 TDPKRAKRILANRQSAAR---SKERKMRYISELEHKVQTLQ-TEATTLSAQLTLLQRD 484 (597)
Q Consensus 431 ~DpKR~KRILaNRESAaR---SReRKKqYIeELE~KVq~LQ-tEN~tLsaQLtlLqre 484 (597)
.+.||..|..+|+.+|.+ +|.||+.+..+|..+|+.|+ .++..|..++..|+.+
T Consensus 151 ~~~~~~~rr~rn~~aA~~~~~~r~~~~~~t~~l~~qv~~l~~~~~~~l~~~is~Lqne 208 (395)
T KOG1414|consen 151 PEEKRLLRRERNPVAAAKPIPCRNRKKPSTSPLQRQVELLPPGINSPLSPQISPLQNE 208 (395)
T ss_pred chHHHHhhccccccccCCCCCCccccccccccccchHhhcCCCCCcccCccccccccH
Confidence 467999999999999999 99999999999999999999 7777777766666553
No 103
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=87.92 E-value=8.3 Score=46.49 Aligned_cols=54 Identities=28% Similarity=0.412 Sum_probs=37.7
Q ss_pred HHHHHHhhHHHHHHHHHHHHHHHHH-----------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007579 436 AKRILANRQSAARSKERKMRYISEL-----------------EHKVQTLQTEATTLSAQLTLLQRDSVGLT 489 (597)
Q Consensus 436 ~KRILaNRESAaRSReRKKqYIeEL-----------------E~KVq~LQtEN~tLsaQLtlLqre~~~L~ 489 (597)
+|++.+-|..|+..-+.|-+|.++| |.+...||.|...|++++.+|+-+..-|.
T Consensus 282 qrel~raR~e~keaqe~ke~~k~emad~ad~iEmaTldKEmAEERaesLQ~eve~lkEr~deletdlEILK 352 (1243)
T KOG0971|consen 282 QRELKRARKEAKEAQEAKERYKEEMADTADAIEMATLDKEMAEERAESLQQEVEALKERVDELETDLEILK 352 (1243)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3677788999888888888887776 45556677777777776666665544333
No 104
>PF05837 CENP-H: Centromere protein H (CENP-H); InterPro: IPR008426 Chromosome segregation in eukaryotes requires the kinetochore, a multi-protein structure that assembles on centromeric DNA, and which acts to link chromosomes to spindle microtubules. Kinetochore structure and composition is highly conserved among vertebrates. The inner kinetochore is essential for kinetochore assembly, and is involved in chromosome segregation via regulation of the spindle. Inner kinetochore components include the multi-subunit CENP-H/I complex, which may function, in part, in directing centromere protein A (CENP-A) deposition to centromeres, where CENP-A is a centromere-specific histone H3 variant required for the organisation of centromeric chromatin during interphase. The CENP-H/I complex contains three functional classes of proteins [, ]: CENP-H class (includes CENP-H, -I, -K, -L) CENP-M class (includes CENP-M) CENP-O class (includes CENP-O, -P, -Q, -R, -50) CENP-H is required for the localisation of CENP-C, but not CENP-A, to the centromere. However, it may be involved in the incorporation of newly synthesised CENP-A into centromeres via its interaction with the CENP-A/CENP-HI complex. CENP-H contains a coiled-coil structure and a nuclear localisation signal. CENP-H is specifically and constitutively localised in kinetochores throughout the cell cycle, and may play a role in kinetochore organisation and function throughout the cell cycle []. Studies show that CENP-H may be associated with certain human cancers [, ]. This entry also includes Kinetochore protein Fta3 which is a subunit of the Sim4 complex. This complex is required for loading the DASH complex onto the kinetochore via interaction with dad1. Fta2, Fta3 and Fta4 associate with the central core and inner repeat region of the centromere [].; GO: 0043515 kinetochore binding, 0007059 chromosome segregation, 0051301 cell division, 0000777 condensed chromosome kinetochore, 0005634 nucleus
Probab=87.91 E-value=3.8 Score=36.88 Aligned_cols=50 Identities=20% Similarity=0.353 Sum_probs=35.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007579 462 HKVQTLQTEATTLSAQLTLLQRDSVGLTNQNNELKFRLQAMEQQAQLRDA 511 (597)
Q Consensus 462 ~KVq~LQtEN~tLsaQLtlLqre~~~L~aEN~ELK~RLqaLEqQaqLrdA 511 (597)
..+..++.+...+..++..++.+...+...|.+|-..|..|..+......
T Consensus 3 ~~~~~~~~~~~~l~~~L~~v~~~~l~l~~~n~el~~el~~l~~~~~~~~~ 52 (106)
T PF05837_consen 3 LEILNLQQESRSLQEKLSDVEKKRLRLKRRNQELAQELLELAEKQKSQRE 52 (106)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcc
Confidence 34566777777777777777777777777888887777777655444333
No 105
>PF02403 Seryl_tRNA_N: Seryl-tRNA synthetase N-terminal domain; InterPro: IPR015866 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the N-terminal domain of Seryl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Seryl-tRNA synthetase (6.1.1.11 from EC) exists as monomer and belongs to class IIa [].; GO: 0000166 nucleotide binding, 0004828 serine-tRNA ligase activity, 0005524 ATP binding, 0006434 seryl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3QO8_A 3QO5_A 3QO7_A 3QNE_A 3LSQ_A 3LSS_A 2DQ3_B 1SET_A 1SER_A 1SRY_B ....
Probab=87.89 E-value=11 Score=33.09 Aligned_cols=13 Identities=8% Similarity=0.261 Sum_probs=5.8
Q ss_pred HhhHHHHHHHHHH
Q 007579 441 ANRQSAARSKERK 453 (597)
Q Consensus 441 aNRESAaRSReRK 453 (597)
.|.+..+.+=.++
T Consensus 9 ~n~e~v~~~l~~R 21 (108)
T PF02403_consen 9 ENPEEVRENLKKR 21 (108)
T ss_dssp HHHHHHHHHHHHT
T ss_pred hCHHHHHHHHHHc
Confidence 3555544444433
No 106
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=87.84 E-value=23 Score=37.14 Aligned_cols=6 Identities=17% Similarity=0.683 Sum_probs=2.4
Q ss_pred hHHHHH
Q 007579 264 VDDLFS 269 (597)
Q Consensus 264 ~ddlf~ 269 (597)
+.|||+
T Consensus 16 L~~FL~ 21 (325)
T PF08317_consen 16 LQDFLN 21 (325)
T ss_pred HHHHHH
Confidence 344443
No 107
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=87.59 E-value=9.7 Score=36.03 Aligned_cols=14 Identities=29% Similarity=0.539 Sum_probs=6.5
Q ss_pred HHHHHHHHHHHHHH
Q 007579 494 ELKFRLQAMEQQAQ 507 (597)
Q Consensus 494 ELK~RLqaLEqQaq 507 (597)
.|..+|+.||.++.
T Consensus 77 ~l~rriq~LEeele 90 (143)
T PF12718_consen 77 QLNRRIQLLEEELE 90 (143)
T ss_pred HHHhhHHHHHHHHH
Confidence 34444555544433
No 108
>PF10211 Ax_dynein_light: Axonemal dynein light chain; InterPro: IPR019347 Axonemal dynein light chain proteins play a dynamic role in flagellar and cilial motility. Eukaryotic cilia and flagella are complex organelles consisting of a core structure, the axoneme, which is composed of nine microtubule doublets forming a cylinder that surrounds a pair of central singlet microtubules. This ultra-structural arrangement seems to be one of the most stable micro-tubular assemblies known and is responsible for the flagellar and ciliary movement of a large number of organisms ranging from protozoan to mammals. This light chain interacts directly with the N-terminal half of the heavy chains [].
Probab=87.59 E-value=10 Score=37.25 Aligned_cols=37 Identities=27% Similarity=0.424 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007579 458 SELEHKVQTLQTEATTLSAQLTLLQRDSVGLTNQNNE 494 (597)
Q Consensus 458 eELE~KVq~LQtEN~tLsaQLtlLqre~~~L~aEN~E 494 (597)
.+|+.++..|+.++..|..++..|+..+..+...+.+
T Consensus 123 ~~l~~~i~~L~~e~~~L~~~~~~l~~~~e~~ek~~~e 159 (189)
T PF10211_consen 123 QELEEEIEELEEEKEELEKQVQELKNKCEQLEKREEE 159 (189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555555555555555555555555555554444443
No 109
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=87.58 E-value=13 Score=42.58 Aligned_cols=61 Identities=16% Similarity=0.293 Sum_probs=45.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007579 444 QSAARSKERKMRYISELEHKVQTLQTEATTLSAQLTLLQRDSVGLTNQNNELKFRLQAMEQ 504 (597)
Q Consensus 444 ESAaRSReRKKqYIeELE~KVq~LQtEN~tLsaQLtlLqre~~~L~aEN~ELK~RLqaLEq 504 (597)
+.|.+.+..=.+-+.+++..+..|++|...+++.+..|+.+...|..||..|...|+.+..
T Consensus 130 ~~~~k~~~~~re~~~~~~~~l~~leAe~~~~krr~~~le~e~~~Lk~en~rl~~~l~~~r~ 190 (546)
T KOG0977|consen 130 EKAEKERRGAREKLDDYLSRLSELEAEINTLKRRIKALEDELKRLKAENSRLREELARARK 190 (546)
T ss_pred HHHHHHHhhhHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHH
Confidence 4454455545555667777888888888888888888888888888888888888876644
No 110
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=87.48 E-value=4.6 Score=45.26 Aligned_cols=33 Identities=27% Similarity=0.367 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007579 470 EATTLSAQLTLLQRDSVGLTNQNNELKFRLQAM 502 (597)
Q Consensus 470 EN~tLsaQLtlLqre~~~L~aEN~ELK~RLqaL 502 (597)
+..+|+.++..|..++..|..||..|+.|...+
T Consensus 67 ~~k~~r~~~~~l~~~N~~l~~eN~~L~~r~~~i 99 (472)
T TIGR03752 67 EVKELRKRLAKLISENEALKAENERLQKREQSI 99 (472)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhH
Confidence 333334444444444444444444444444333
No 111
>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton]
Probab=87.36 E-value=14 Score=44.45 Aligned_cols=68 Identities=16% Similarity=0.254 Sum_probs=36.0
Q ss_pred ChHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007579 432 DPKRAKRILANRQSAARSKERKMRYISELEHKVQTLQTEATTLSAQLTLLQRDSVGLTNQNNELKFRL 499 (597)
Q Consensus 432 DpKR~KRILaNRESAaRSReRKKqYIeELE~KVq~LQtEN~tLsaQLtlLqre~~~L~aEN~ELK~RL 499 (597)
|..++|--++-+...+--=+|-+..++++|.+....+.....|+..++.|......|...+.....++
T Consensus 387 e~eqLr~elaql~a~r~q~eka~~~~ee~e~~~l~~e~ry~klkek~t~l~~~h~~lL~K~~di~kQl 454 (980)
T KOG0980|consen 387 EQEQLRNELAQLLASRTQLEKAQVLVEEAENKALAAENRYEKLKEKYTELRQEHADLLRKYDDIQKQL 454 (980)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444334444446666666666666666666666666555555555555444444
No 112
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=87.13 E-value=24 Score=35.05 Aligned_cols=58 Identities=17% Similarity=0.299 Sum_probs=38.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007579 448 RSKERKMRYISELEHKVQTLQTEATTLSAQLTLLQRDSVGLTNQNNELKFRLQAMEQQ 505 (597)
Q Consensus 448 RSReRKKqYIeELE~KVq~LQtEN~tLsaQLtlLqre~~~L~aEN~ELK~RLqaLEqQ 505 (597)
.--.+-+.-+..+..++..++.+...|.-+...|+..+..|..|-.+|..+....-+.
T Consensus 79 ~~y~kdK~~L~~~k~rl~~~ek~l~~Lk~e~evL~qr~~kle~ErdeL~~kf~~~i~e 136 (201)
T PF13851_consen 79 KNYEKDKQSLQNLKARLKELEKELKDLKWEHEVLEQRFEKLEQERDELYRKFESAIQE 136 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344555566667777777777777777777777777777777777777666544333
No 113
>PF06428 Sec2p: GDP/GTP exchange factor Sec2p; InterPro: IPR009449 In Saccharomyces cerevisiae, Sec2p is a GDP/GTP exchange factor for Sec4p, which is required for vesicular transport at the post-Golgi stage of yeast secretion []. It catalyzes the dissociation of GDP from SEC4 and also potently promoting binding of GTP. Activation of SEC4 by SEC2 is needed for the directed transport of vesicles to sites of exocytosis. Binds the Rab GTPase YPT32, but does not have exhange activity on YPT32 [, , ].; PDB: 2EQB_C 2E7S_K 2OCY_A.
Probab=87.12 E-value=0.71 Score=41.72 Aligned_cols=78 Identities=26% Similarity=0.381 Sum_probs=49.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Q 007579 455 RYISELEHKVQTLQTEATTLSAQLTLLQRDSVGLTN---QNNELKFRLQAMEQQAQLRDALNEALTAEVRRLKVATQEMA 531 (597)
Q Consensus 455 qYIeELE~KVq~LQtEN~tLsaQLtlLqre~~~L~a---EN~ELK~RLqaLEqQaqLrdALnEaLkeEVqrLK~a~gEi~ 531 (597)
....++|..+..++.|...|.+.| .+..+.+... +...+..+...|+.++.-.+.+.+.|..++..||..+..+.
T Consensus 8 ~~r~~ae~~~~~ie~ElEeLTasL--FeEAN~MVa~ar~e~~~~e~k~~~le~~l~e~~~~l~~lq~qL~~LK~v~~~~~ 85 (100)
T PF06428_consen 8 ERREEAEQEKEQIESELEELTASL--FEEANKMVADARRERAALEEKNEQLEKQLKEKEALLESLQAQLKELKTVMESME 85 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHCTTHHCHCCCHCTSSSSHHHHCTTT--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 344667777777777777777664 2333333333 33455666777777777777888889999999998887765
Q ss_pred CCC
Q 007579 532 SES 534 (597)
Q Consensus 532 ~~~ 534 (597)
...
T Consensus 86 ~~~ 88 (100)
T PF06428_consen 86 SES 88 (100)
T ss_dssp ---
T ss_pred ccc
Confidence 543
No 114
>KOG1962 consensus B-cell receptor-associated protein and related proteins [Defense mechanisms]
Probab=86.94 E-value=8 Score=39.52 Aligned_cols=62 Identities=18% Similarity=0.220 Sum_probs=30.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 007579 467 LQTEATTLSAQLTLLQRDSVGLTNQNNELKFRLQAMEQQAQLRDALNEALTAEVRRLKVATQ 528 (597)
Q Consensus 467 LQtEN~tLsaQLtlLqre~~~L~aEN~ELK~RLqaLEqQaqLrdALnEaLkeEVqrLK~a~g 528 (597)
|+.|+..+.+.++.|+.+......+-..+..+..+|..|..-..-..+.|.+|-++|+..+-
T Consensus 149 ~~~~~~~~~~~~~kL~~el~~~~~~Le~~~~~~~al~Kq~e~~~~EydrLlee~~~Lq~~i~ 210 (216)
T KOG1962|consen 149 LEEENDKLKADLEKLETELEKKQKKLEKAQKKVDALKKQSEGLQDEYDRLLEEYSKLQEQIE 210 (216)
T ss_pred hhhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHh
Confidence 34444444444444444444444444444444444444444334445666667777766543
No 115
>PF05700 BCAS2: Breast carcinoma amplified sequence 2 (BCAS2); InterPro: IPR008409 This family consists of several eukaryotic sequences of unknown function. The mammalian members of this family are annotated as breast carcinoma amplified sequence 2 (BCAS2) proteins []. BCAS2 is a putative spliceosome associated protein [].
Probab=86.93 E-value=11 Score=37.71 Aligned_cols=78 Identities=18% Similarity=0.216 Sum_probs=52.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Q 007579 455 RYISELEHKVQTLQTEATTLSAQLTLLQRDSV----GLTNQNNELKFRLQAMEQQAQLRDALNEALTAEVRRLKVATQEM 530 (597)
Q Consensus 455 qYIeELE~KVq~LQtEN~tLsaQLtlLqre~~----~L~aEN~ELK~RLqaLEqQaqLrdALnEaLkeEVqrLK~a~gEi 530 (597)
.|...||..++.|+.+...++.+|..+..... ....+.+.|..+-..+.....-.+.-...|..||.+||....+.
T Consensus 136 ~~n~~Le~~~~~le~~l~~~k~~ie~vN~~RK~~Q~~~~~~L~~Le~~W~~~v~kn~eie~a~~~Le~ei~~l~~~~~~~ 215 (221)
T PF05700_consen 136 IHNEQLEAMLKRLEKELAKLKKEIEEVNRERKRRQEEAGEELRYLEQRWKELVSKNLEIEVACEELEQEIEQLKRKAAEL 215 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 57788899999999999998888887765321 12223445555555555555555556777788888888877765
Q ss_pred cC
Q 007579 531 AS 532 (597)
Q Consensus 531 ~~ 532 (597)
-.
T Consensus 216 ~~ 217 (221)
T PF05700_consen 216 KE 217 (221)
T ss_pred hc
Confidence 43
No 116
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=86.81 E-value=10 Score=36.06 Aligned_cols=65 Identities=26% Similarity=0.364 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007579 460 LEHKVQTLQTEATTLSAQLTLLQRDSVGLTNQNNELKFRLQAMEQQAQLRDALNEALTAEVRRLK 524 (597)
Q Consensus 460 LE~KVq~LQtEN~tLsaQLtlLqre~~~L~aEN~ELK~RLqaLEqQaqLrdALnEaLkeEVqrLK 524 (597)
++..+..|+.|..++...+..++.+...+......+...++..+......+...+.+.+|+..|.
T Consensus 86 ~~~~l~~l~~el~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~e~~~l~ 150 (191)
T PF04156_consen 86 LQQQLQQLQEELDQLQERIQELESELEKLKEDLQELRELLKSVEERLDSLDESIKELEKEIRELQ 150 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333333333333333333333333333333333333444444444444
No 117
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=86.69 E-value=7.3 Score=45.00 Aligned_cols=88 Identities=17% Similarity=0.297 Sum_probs=54.8
Q ss_pred HHHHhhHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHH
Q 007579 438 RILANRQSAARSKERK-MRYISELEHKVQTLQTEATTLSAQLTLLQRDSVGLTNQNNELK---FRLQAMEQQAQLRDALN 513 (597)
Q Consensus 438 RILaNRESAaRSReRK-KqYIeELE~KVq~LQtEN~tLsaQLtlLqre~~~L~aEN~ELK---~RLqaLEqQaqLrdALn 513 (597)
+...+|..+.+.+..+ ...+.+|+.++..|+.++..|..++..+.++...-.-.+++++ .++..|+..+.-.....
T Consensus 418 ~~~~~~i~~~~~~ve~l~~e~~~L~~~~ee~k~eie~L~~~l~~~~r~~~~~~~~~rei~~~~~~I~~L~~~L~e~~~~v 497 (652)
T COG2433 418 TVYEKRIKKLEETVERLEEENSELKRELEELKREIEKLESELERFRREVRDKVRKDREIRARDRRIERLEKELEEKKKRV 497 (652)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555555433 3456677777777777777777777777666554444444443 45677776666666677
Q ss_pred HHHHHHHHHHHH
Q 007579 514 EALTAEVRRLKV 525 (597)
Q Consensus 514 EaLkeEVqrLK~ 525 (597)
+.|+.++.+|+.
T Consensus 498 e~L~~~l~~l~k 509 (652)
T COG2433 498 EELERKLAELRK 509 (652)
T ss_pred HHHHHHHHHHHH
Confidence 777777777773
No 118
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=86.23 E-value=18 Score=40.43 Aligned_cols=53 Identities=19% Similarity=0.124 Sum_probs=34.3
Q ss_pred hHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007579 433 PKRAKRILANRQSAARSKERKMRYISELEHKVQTLQTEATTLSAQLTLLQRDS 485 (597)
Q Consensus 433 pKR~KRILaNRESAaRSReRKKqYIeELE~KVq~LQtEN~tLsaQLtlLqre~ 485 (597)
+|++-|+.+.+..-+-.-+-=++++.++|..++.||.||..|..+...++...
T Consensus 26 ~k~~s~~~aq~~~~~a~~~ai~a~~~~~E~~l~~Lq~e~~~l~e~~v~~~a~~ 78 (459)
T KOG0288|consen 26 EKAQSRLSAQLVILRAESRAIKAKLQEKELELNRLQEENTQLNEERVREEATE 78 (459)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46666655544332222222345678899999999999999888776654443
No 119
>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin []. Ezrin was first identified as a constituent of microvilli [], radixin as a barbed, end-capping actin-modulating protein from isolated junctional fractions [], and moesin as a heparin binding protein []. A tumour suppressor molecule responsible for neurofibromatosis type 2 (NF2) is highly similar to ERM proteins and has been designated merlin (moesin-ezrin-radixin-like protein). ERM molecules contain 3 domains, an N-terminal globular domain; an extended alpha-helical domain; and a charged C-terminal domain []. Ezrin, radixin and merlin also contain a polyproline region between the helical and C-terminal domains. The N-terminal domain is highly conserved, and is also found in merlin, band 4.1 proteins and members of the band 4.1 superfamily. ERM proteins crosslink actin filaments with plasma membranes. They co-localise with CD44 at actin filament-plasma membrane interaction sites, associating with CD44 via their N-terminal domains and with actin filaments via their C-terminal domains [].; GO: 0008092 cytoskeletal protein binding, 0005737 cytoplasm, 0019898 extrinsic to membrane; PDB: 2I1J_A 2I1K_A 1E5W_A 1EF1_C.
Probab=86.23 E-value=42 Score=34.34 Aligned_cols=68 Identities=19% Similarity=0.301 Sum_probs=41.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007579 458 SELEHKVQTLQTEATTLSAQLTLLQRDSVGLTNQNNELKFRLQAMEQQAQLRDALNEALTAEVRRLKV 525 (597)
Q Consensus 458 eELE~KVq~LQtEN~tLsaQLtlLqre~~~L~aEN~ELK~RLqaLEqQaqLrdALnEaLkeEVqrLK~ 525 (597)
..|+.+...++.++..|..+......+...|..+..++...+..|+....-++...+.|+.++...+.
T Consensus 50 ~~Le~k~~eaee~~~rL~~~~~~~~eEk~~Le~e~~e~~~~i~~l~ee~~~ke~Ea~~lq~el~~ar~ 117 (246)
T PF00769_consen 50 EELEQKRQEAEEEKQRLEEEAEMQEEEKEQLEQELREAEAEIARLEEESERKEEEAEELQEELEEARE 117 (246)
T ss_dssp HHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34666666667777777777766777777777788888888888888888888888888777655544
No 120
>PLN02320 seryl-tRNA synthetase
Probab=86.00 E-value=16 Score=41.40 Aligned_cols=100 Identities=18% Similarity=0.168 Sum_probs=51.8
Q ss_pred ChHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHH
Q 007579 432 DPKRAKRILANRQSAARSKERKMRYISELEHKVQTLQTEATTLSAQLTLLQRDSVGLT--NQNNELKFRLQAMEQQAQLR 509 (597)
Q Consensus 432 DpKR~KRILaNRESAaRSReRKKqYIeELE~KVq~LQtEN~tLsaQLtlLqre~~~L~--aEN~ELK~RLqaLEqQaqLr 509 (597)
++..+++.|++|-... ....+.+|..+...|+.+...|+++...+.++..... .+..+|+.++..|.++..-.
T Consensus 75 n~~~v~~~l~~R~~~~-----~vd~l~~ld~~~r~~~~~~~~lr~ern~~sk~i~~~~~~~~~~~l~~~~k~lk~~i~~l 149 (502)
T PLN02320 75 NKEAVAINIRNRNSNA-----NLELVLELYENMLALQKEVERLRAERNAVANKMKGKLEPSERQALVEEGKNLKEGLVTL 149 (502)
T ss_pred CHHHHHHHHHhcCCCc-----CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCHHHHHHHHHHHHHHHHHH
Confidence 4555555555553210 0344455555555555555555555555444432200 12233444444444444444
Q ss_pred HHHHHHHHHHHHHHHHHhccccCCCCC
Q 007579 510 DALNEALTAEVRRLKVATQEMASESDP 536 (597)
Q Consensus 510 dALnEaLkeEVqrLK~a~gEi~~~~~~ 536 (597)
+.....+.+|+..+-..++.++.+..+
T Consensus 150 e~~~~~~~~~l~~~~l~iPN~~h~~VP 176 (502)
T PLN02320 150 EEDLVKLTDELQLEAQSIPNMTHPDVP 176 (502)
T ss_pred HHHHHHHHHHHHHHHHhCCCCCCccCC
Confidence 444556677888888888888877654
No 121
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=85.65 E-value=24 Score=37.44 Aligned_cols=31 Identities=19% Similarity=0.209 Sum_probs=11.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007579 460 LEHKVQTLQTEATTLSAQLTLLQRDSVGLTN 490 (597)
Q Consensus 460 LE~KVq~LQtEN~tLsaQLtlLqre~~~L~a 490 (597)
|..++..+..++.....++..++.+...+..
T Consensus 209 lk~~l~~~~~ei~~~~~~l~e~~~~l~~l~~ 239 (312)
T smart00787 209 AKEKLKKLLQEIMIKVKKLEELEEELQELES 239 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333333333333333
No 122
>PRK02224 chromosome segregation protein; Provisional
Probab=85.61 E-value=18 Score=41.96 Aligned_cols=13 Identities=8% Similarity=0.133 Sum_probs=5.0
Q ss_pred HHHHHHHHHHhcc
Q 007579 517 TAEVRRLKVATQE 529 (597)
Q Consensus 517 keEVqrLK~a~gE 529 (597)
++++..++..+.+
T Consensus 626 ~~~l~~~r~~i~~ 638 (880)
T PRK02224 626 RERLAEKRERKRE 638 (880)
T ss_pred HHHHHHHHHHHHH
Confidence 3333334433333
No 123
>PRK12704 phosphodiesterase; Provisional
Probab=85.61 E-value=13 Score=41.92 Aligned_cols=23 Identities=22% Similarity=0.125 Sum_probs=8.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 007579 475 SAQLTLLQRDSVGLTNQNNELKF 497 (597)
Q Consensus 475 saQLtlLqre~~~L~aEN~ELK~ 497 (597)
..+...|.+....|....++|..
T Consensus 92 ~~Ree~Le~r~e~Lekke~eL~~ 114 (520)
T PRK12704 92 LQKEENLDRKLELLEKREEELEK 114 (520)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333333
No 124
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=85.32 E-value=6.4 Score=37.25 Aligned_cols=50 Identities=24% Similarity=0.389 Sum_probs=28.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007579 455 RYISELEHKVQTLQTEATTLSAQL--TLLQRDSVGLTNQNNELKFRLQAMEQ 504 (597)
Q Consensus 455 qYIeELE~KVq~LQtEN~tLsaQL--tlLqre~~~L~aEN~ELK~RLqaLEq 504 (597)
..+.+|+.+++.|+.|...|...+ ..|......|..|+.+|..+|+.|..
T Consensus 86 ~el~~l~~~~k~l~~eL~~L~~~~t~~el~~~i~~l~~e~~~l~~kL~~l~~ 137 (169)
T PF07106_consen 86 EELAELKKEVKSLEAELASLSSEPTNEELREEIEELEEEIEELEEKLEKLRS 137 (169)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344555555555555555555554 34455566666666666666666643
No 125
>PF10805 DUF2730: Protein of unknown function (DUF2730); InterPro: IPR020269 This entry represents a family of various hypothetical proteins. The proteins, which include HI1498 and Gp25, from phage Mu, are currently uncharacterised.
Probab=85.26 E-value=11 Score=34.02 Aligned_cols=63 Identities=21% Similarity=0.208 Sum_probs=41.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007579 454 MRYISELEHKVQTLQTEATTLSAQLTLL--QRDSVGLTNQNNELKFRLQAMEQQAQLRDALNEAL 516 (597)
Q Consensus 454 KqYIeELE~KVq~LQtEN~tLsaQLtlL--qre~~~L~aEN~ELK~RLqaLEqQaqLrdALnEaL 516 (597)
+.-++.|+.++..+......|..++..| ..+.+.|..+-.+++-++..|+.+.+-.+.+.+.|
T Consensus 34 ~~~~~~l~~~~~~~~~Rl~~lE~~l~~LPt~~dv~~L~l~l~el~G~~~~l~~~l~~v~~~~~lL 98 (106)
T PF10805_consen 34 REDIEKLEERLDEHDRRLQALETKLEHLPTRDDVHDLQLELAELRGELKELSARLQGVSHQLDLL 98 (106)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 4556666666666666666666666666 66666666666666666666666665555555554
No 126
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=85.19 E-value=16 Score=44.65 Aligned_cols=11 Identities=45% Similarity=0.519 Sum_probs=5.3
Q ss_pred CCCCCccchhh
Q 007579 227 NPGVAKPAQLV 237 (597)
Q Consensus 227 ~~~~~k~~~lv 237 (597)
+.|..|.+-|+
T Consensus 70 ~NGSGKSAIlt 80 (1074)
T KOG0250|consen 70 NNGSGKSAILT 80 (1074)
T ss_pred CCCCcHHHHHH
Confidence 44555544443
No 127
>PHA02562 46 endonuclease subunit; Provisional
Probab=85.14 E-value=21 Score=38.91 Aligned_cols=51 Identities=16% Similarity=0.149 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007579 453 KMRYISELEHKVQTLQTEATTLSAQLTLLQRDSVGLTNQNNELKFRLQAME 503 (597)
Q Consensus 453 KKqYIeELE~KVq~LQtEN~tLsaQLtlLqre~~~L~aEN~ELK~RLqaLE 503 (597)
....+.+|+.++..+......+..+...|+.+...|..++.++..+|..++
T Consensus 335 ~~~~i~el~~~i~~~~~~i~~~~~~~~~l~~ei~~l~~~~~~~~~~l~~l~ 385 (562)
T PHA02562 335 QSKKLLELKNKISTNKQSLITLVDKAKKVKAAIEELQAEFVDNAEELAKLQ 385 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhchHHHHHHHH
Confidence 344444444444444444444444444444444444444444444443333
No 128
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication. SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.
Probab=85.12 E-value=5.7 Score=36.27 Aligned_cols=44 Identities=20% Similarity=0.320 Sum_probs=28.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007579 459 ELEHKVQTLQTEATTLSAQLTLLQRDSVGLTNQNNELKFRLQAM 502 (597)
Q Consensus 459 ELE~KVq~LQtEN~tLsaQLtlLqre~~~L~aEN~ELK~RLqaL 502 (597)
+|=.++..|+.....|..++..|+.....|..||.+|+...+.|
T Consensus 5 ~l~~~l~~le~~l~~l~~~~~~LK~~~~~l~EEN~~L~~EN~~L 48 (107)
T PF06156_consen 5 ELFDRLDQLEQQLGQLLEELEELKKQLQELLEENARLRIENEHL 48 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45556666666667777777777777777777777666655444
No 129
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]
Probab=84.98 E-value=11 Score=44.98 Aligned_cols=51 Identities=16% Similarity=0.255 Sum_probs=28.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007579 459 ELEHKVQTLQTEATTLSAQLTLLQRDSVGLTNQNNELKFRLQAMEQQAQLR 509 (597)
Q Consensus 459 ELE~KVq~LQtEN~tLsaQLtlLqre~~~L~aEN~ELK~RLqaLEqQaqLr 509 (597)
-+.+-|..|+.....+..||..||..+..|++|...|..-++.++.+++-.
T Consensus 89 iyRrdv~llEddlk~~~sQiriLQn~c~~lE~ekq~lQ~ti~~~q~d~ke~ 139 (1265)
T KOG0976|consen 89 IYRRDVNLLEDDLKHHESQIRILQNKCLRLEMEKQKLQDTIQGAQDDKKEN 139 (1265)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444455555555666666666666666666666666666555444433
No 130
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=84.83 E-value=9 Score=46.19 Aligned_cols=89 Identities=21% Similarity=0.301 Sum_probs=52.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHH------
Q 007579 443 RQSAARSKERKMRYISELEHKVQTLQTEATTLSAQLTLLQRDS----------VGLTNQNNELKFRLQAMEQQA------ 506 (597)
Q Consensus 443 RESAaRSReRKKqYIeELE~KVq~LQtEN~tLsaQLtlLqre~----------~~L~aEN~ELK~RLqaLEqQa------ 506 (597)
++.+.+-=+||...+.||++..+.|..+...+..+|..|+++. +.|+..|=+|..|+..||...
T Consensus 398 ~qK~~kelE~k~sE~~eL~r~kE~Lsr~~d~aEs~iadlkEQVDAAlGAE~MV~qLtdknlnlEekVklLeetv~dlEal 477 (1243)
T KOG0971|consen 398 HQKLQKELEKKNSELEELRRQKERLSRELDQAESTIADLKEQVDAALGAEEMVEQLTDKNLNLEEKVKLLEETVGDLEAL 477 (1243)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHhhccCHHHHHHHHHHHHHHHHHH
Confidence 5566667778888888888877777777777777777776653 334444555555544444332
Q ss_pred -HHHHHH-------HHHHHHHHHHHHHHhcccc
Q 007579 507 -QLRDAL-------NEALTAEVRRLKVATQEMA 531 (597)
Q Consensus 507 -qLrdAL-------nEaLkeEVqrLK~a~gEi~ 531 (597)
.+-+.| .--|++||..|+.+.-++.
T Consensus 478 ee~~EQL~Esn~ele~DLreEld~~~g~~kel~ 510 (1243)
T KOG0971|consen 478 EEMNEQLQESNRELELDLREELDMAKGARKELQ 510 (1243)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHH
Confidence 222222 1235567776655554443
No 131
>PF14817 HAUS5: HAUS augmin-like complex subunit 5
Probab=84.81 E-value=12 Score=43.45 Aligned_cols=59 Identities=17% Similarity=0.254 Sum_probs=35.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007579 456 YISELEHKVQTLQTEATTLSAQLTLLQRDSVGLTNQNNELKFRLQAMEQQAQLRDALNE 514 (597)
Q Consensus 456 YIeELE~KVq~LQtEN~tLsaQLtlLqre~~~L~aEN~ELK~RLqaLEqQaqLrdALnE 514 (597)
.-.+|+.+|..|+.++..|..+|..+++++..-..+-.....++........|..+...
T Consensus 80 ~r~~L~~everLraei~~l~~~I~~~e~e~~~~e~~~~q~~~~~~~~~~k~~LL~Ay~q 138 (632)
T PF14817_consen 80 RRRELEKEVERLRAEIQELDKEIESREREVSRQEASREQMLDKISDSRHKQLLLEAYSQ 138 (632)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34567777777777777777777777776665555555544444444444444444333
No 132
>TIGR03495 phage_LysB phage lysis regulatory protein, LysB family. Members of this protein family are phage lysis regulatory protein, including the well-studied protein LysB (lysis protein B) of Enterobacteria phage P2. For members of this family, genes are found in phage or in prophage regions of bacterial genomes, typically near a phage lysozyme or phage holin.
Probab=84.77 E-value=13 Score=35.43 Aligned_cols=76 Identities=16% Similarity=0.156 Sum_probs=55.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-ccC
Q 007579 457 ISELEHKVQTLQTEATTLSAQLTLLQRDSVGLTNQNNELKFRLQAMEQQAQLRDALNEALTAEVRRLKVATQE-MAS 532 (597)
Q Consensus 457 IeELE~KVq~LQtEN~tLsaQLtlLqre~~~L~aEN~ELK~RLqaLEqQaqLrdALnEaLkeEVqrLK~a~gE-i~~ 532 (597)
++.....++..++.+..+..+|+.|......-..+...|+..++.....+.-++..++.|+.|-+.||.=.+. +|+
T Consensus 28 ~~~a~~~~~~~~~~l~~~~~qL~~l~~~a~~~~~~Q~~Lr~~~~~~~~~l~~re~~i~rL~~ENe~lR~Wa~t~LPd 104 (135)
T TIGR03495 28 LERANRVLKAQQAELASKANQLIVLLALAKRNEEAQAQLRQQLAQARALLAQREQRIERLKRENEDLRRWADTPLPD 104 (135)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHhcCCCcH
Confidence 3444445566667777777777777776666667777788888888888888888899999999999986643 444
No 133
>PF04880 NUDE_C: NUDE protein, C-terminal conserved region; InterPro: IPR006964 This domain represents the C-terminal conserved region of NUDE proteins. Emericella nidulans (Aspergillus nidulans) NUDE, acts in the cytoplasmic dynein/dynactin pathway and is required for distribution of nuclei []. It is a homologue of the nuclear distribution protein RO11 of Neurospora crassa. NUDE interacts with the NUDF via an N-terminal coiled coil domain; this is the only domain which is absolutely required for NUDE function.; PDB: 2V66_B 2V71_B.
Probab=84.72 E-value=1.4 Score=43.04 Aligned_cols=53 Identities=19% Similarity=0.340 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007579 457 ISELEHKVQTLQTEATTLSAQLTLLQRDSVGLTNQNNELKFRLQAMEQQAQLRDALN 513 (597)
Q Consensus 457 IeELE~KVq~LQtEN~tLsaQLtlLqre~~~L~aEN~ELK~RLqaLEqQaqLrdALn 513 (597)
|+++|.|+.+.-++|.-|..+| .+...|..+++.||..+..|.+++.+++.+.
T Consensus 2 LeD~EsklN~AIERnalLE~EL----dEKE~L~~~~QRLkDE~RDLKqEl~V~ek~~ 54 (166)
T PF04880_consen 2 LEDFESKLNQAIERNALLESEL----DEKENLREEVQRLKDELRDLKQELIVQEKLR 54 (166)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHCH---------------------
T ss_pred HHHHHHHHHHHHHHhHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 7899999999999999999888 3455677777777777777776665555543
No 134
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=84.62 E-value=16 Score=44.54 Aligned_cols=72 Identities=19% Similarity=0.287 Sum_probs=47.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 007579 457 ISELEHKVQTLQTEATTLSAQLTLLQRDSVGLTNQNNELKFRLQAMEQQAQLRDALNEALTAEVRRLKVATQ 528 (597)
Q Consensus 457 IeELE~KVq~LQtEN~tLsaQLtlLqre~~~L~aEN~ELK~RLqaLEqQaqLrdALnEaLkeEVqrLK~a~g 528 (597)
+.+|+.+++.+...+..-+..+..-++++..|..|-.+|+..+...+++..-.....+.|+.|+..|+..+.
T Consensus 789 lkdl~keik~~k~~~e~~~~~~ek~~~e~e~l~lE~e~l~~e~~~~k~~l~~~~~~~~~l~~e~~~l~~kv~ 860 (1174)
T KOG0933|consen 789 LKDLEKEIKTAKQRAEESSKELEKRENEYERLQLEHEELEKEISSLKQQLEQLEKQISSLKSELGNLEAKVD 860 (1174)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 346666666666666666666666666777777777777777777777666666666666666666655543
No 135
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=84.59 E-value=21 Score=35.84 Aligned_cols=11 Identities=18% Similarity=0.259 Sum_probs=4.1
Q ss_pred HHHHHHHHHHH
Q 007579 515 ALTAEVRRLKV 525 (597)
Q Consensus 515 aLkeEVqrLK~ 525 (597)
.+...|..|..
T Consensus 194 ~aE~~v~~Le~ 204 (237)
T PF00261_consen 194 FAERRVKKLEK 204 (237)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 33333333333
No 136
>TIGR02977 phageshock_pspA phage shock protein A. Members of this family are the phage shock protein PspA, from the phage shock operon. This is a narrower family than the set of PspA and its homologs, sometimes several in a genome, as described by PFAM model pfam04012. PspA appears to maintain the protonmotive force under stress conditions that include overexpression of certain phage secretins, heat shock, ethanol, and protein export defects.
Probab=84.55 E-value=21 Score=35.39 Aligned_cols=59 Identities=19% Similarity=0.273 Sum_probs=45.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007579 454 MRYISELEHKVQTLQTEATTLSAQLTLLQRDSVGLTNQNNELKFRLQAMEQQAQLRDAL 512 (597)
Q Consensus 454 KqYIeELE~KVq~LQtEN~tLsaQLtlLqre~~~L~aEN~ELK~RLqaLEqQaqLrdAL 512 (597)
...+..|+..+..++.....|..++..|++.+..+.+....|+.|.+....+..+...+
T Consensus 98 ~~~~~~l~~~~~~~~~~v~~l~~~l~~L~~ki~~~k~k~~~l~ar~~~A~a~~~~~~~~ 156 (219)
T TIGR02977 98 QELAEALERELAAVEETLAKLQEDIAKLQAKLAEARARQKALAIRHQAASSRLDVRRQL 156 (219)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44566778888888888888888888888888888888888888887776665555543
No 137
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=84.51 E-value=12 Score=42.83 Aligned_cols=70 Identities=24% Similarity=0.256 Sum_probs=46.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 007579 458 SELEHKVQTLQTEATTLSAQLTLLQRDSVGLTNQNNELKFRLQAMEQQAQLRDALNEALTAEVRRLKVAT 527 (597)
Q Consensus 458 eELE~KVq~LQtEN~tLsaQLtlLqre~~~L~aEN~ELK~RLqaLEqQaqLrdALnEaLkeEVqrLK~a~ 527 (597)
.+|..++...+.+...-..++..+......|.+|...+|.++..|+.++.-..+.|..|..+++++|..+
T Consensus 123 ~elr~~~~~~~k~~~~~re~~~~~~~~l~~leAe~~~~krr~~~le~e~~~Lk~en~rl~~~l~~~r~~l 192 (546)
T KOG0977|consen 123 KELRKKLEKAEKERRGAREKLDDYLSRLSELEAEINTLKRRIKALEDELKRLKAENSRLREELARARKQL 192 (546)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHH
Confidence 3333333333333333344444445556778888888888888888888888888888888888888654
No 138
>TIGR00414 serS seryl-tRNA synthetase. This model represents the seryl-tRNA synthetase found in most organisms. This protein is a class II tRNA synthetase, and is recognized by the pfam model tRNA-synt_2b. The seryl-tRNA synthetases of two archaeal species, Methanococcus jannaschii and Methanobacterium thermoautotrophicum, differ considerably and are included in a different model.
Probab=84.40 E-value=27 Score=38.18 Aligned_cols=70 Identities=26% Similarity=0.303 Sum_probs=37.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCCC
Q 007579 460 LEHKVQTLQTEATTLSAQLTLLQRD----SVGLTNQNNELKFRLQAMEQQAQLRDALNEALTAEVRRLKVATQEMASESD 535 (597)
Q Consensus 460 LE~KVq~LQtEN~tLsaQLtlLqre----~~~L~aEN~ELK~RLqaLEqQaqLrdALnEaLkeEVqrLK~a~gEi~~~~~ 535 (597)
|..+++.|+.|-+.+++++..+... ...|..+-++|+.+|..| +...+.+.+++..+-..++.++.+..
T Consensus 42 ~~~~~~~l~~erN~~sk~i~~~~~~~~~~~~~l~~~~~~l~~~~~~~-------~~~~~~~~~~~~~~~~~lPN~~~~~v 114 (418)
T TIGR00414 42 LLSEIEELQAKRNELSKQIGKAKGQKKDKIEEIKKELKELKEELTEL-------SAALKALEAELQDKLLSIPNIPHESV 114 (418)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHhCCCCCCccC
Confidence 3344444555555555555443211 233444444444444444 44455666777777777787776654
Q ss_pred C
Q 007579 536 P 536 (597)
Q Consensus 536 ~ 536 (597)
+
T Consensus 115 P 115 (418)
T TIGR00414 115 P 115 (418)
T ss_pred C
Confidence 3
No 139
>PRK05431 seryl-tRNA synthetase; Provisional
Probab=84.37 E-value=13 Score=40.58 Aligned_cols=46 Identities=28% Similarity=0.425 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHH
Q 007579 461 EHKVQTLQTEATTLSAQLTLLQR---DSVGLTNQNNELKFRLQAMEQQA 506 (597)
Q Consensus 461 E~KVq~LQtEN~tLsaQLtlLqr---e~~~L~aEN~ELK~RLqaLEqQa 506 (597)
..+++.|+.+-+.+++++..+.. +...|..+-++|+.+|..++.+.
T Consensus 41 ~~~~~~lr~~rn~~sk~i~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~ 89 (425)
T PRK05431 41 QTELEELQAERNALSKEIGQAKRKGEDAEALIAEVKELKEEIKALEAEL 89 (425)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCCcHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555555555555544221 23457777777777777776553
No 140
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=84.35 E-value=46 Score=33.88 Aligned_cols=28 Identities=29% Similarity=0.484 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007579 455 RYISELEHKVQTLQTEATTLSAQLTLLQ 482 (597)
Q Consensus 455 qYIeELE~KVq~LQtEN~tLsaQLtlLq 482 (597)
.-+..|+.++..|+..|..|..+|..|+
T Consensus 223 ~~~~~l~~el~~l~~~~~~Le~~l~~le 250 (312)
T PF00038_consen 223 RQIQSLQAELESLRAKNASLERQLRELE 250 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhHhhhhhhccccchhhhhhhHHHHH
Confidence 3344555555555555555555554444
No 141
>PF09304 Cortex-I_coil: Cortexillin I, coiled coil; InterPro: IPR015383 This domain is predominantly found in the actin-bundling protein cortexillin I from Dictyostelium discoideum (Slime mold). The domain has a structure consisting of an 18-heptad-repeat alpha-helical coiled-coil, and is a prerequisite for the assembly of Cortexillin I []. ; PDB: 1D7M_A.
Probab=84.24 E-value=26 Score=32.58 Aligned_cols=49 Identities=14% Similarity=0.162 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007579 444 QSAARSKERKMRYISELEHKVQTLQTEATTLSAQLTLLQRDSVGLTNQN 492 (597)
Q Consensus 444 ESAaRSReRKKqYIeELE~KVq~LQtEN~tLsaQLtlLqre~~~L~aEN 492 (597)
+...-|+..=.+.-++|+..++.|+.++..+..++..|+.++..+...-
T Consensus 26 E~~K~S~~eL~kqkd~L~~~l~~L~~q~~s~~qr~~eLqaki~ea~~~l 74 (107)
T PF09304_consen 26 EDEKTSQGELAKQKDQLRNALQSLQAQNASRNQRIAELQAKIDEARRNL 74 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333344555555555555555555555555554444433
No 142
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=84.18 E-value=7.7 Score=41.39 Aligned_cols=45 Identities=38% Similarity=0.418 Sum_probs=37.6
Q ss_pred HHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007579 458 SELEHKVQ---TLQTEATTLSAQLTLLQRDSVGLTNQNNELKFRLQAM 502 (597)
Q Consensus 458 eELE~KVq---~LQtEN~tLsaQLtlLqre~~~L~aEN~ELK~RLqaL 502 (597)
++|.+|.. ..+.|++.|.++|..|++.+..++.||.+|..+|...
T Consensus 220 eELa~k~Ee~~rQQEEIt~LlsqivdlQ~r~k~~~~EnEeL~q~L~~s 267 (306)
T PF04849_consen 220 EELARKTEENRRQQEEITSLLSQIVDLQQRCKQLAAENEELQQHLQAS 267 (306)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 45555544 5677899999999999999999999999999998766
No 143
>PRK13922 rod shape-determining protein MreC; Provisional
Probab=84.17 E-value=14 Score=37.34 Aligned_cols=43 Identities=33% Similarity=0.301 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 007579 483 RDSVGLTNQNNELKFRLQAMEQQAQLRDALNEALTAEVRRLKVATQE 529 (597)
Q Consensus 483 re~~~L~aEN~ELK~RLqaLEqQaqLrdALnEaLkeEVqrLK~a~gE 529 (597)
..+..|..||.+|+.++..|+.+.. ..+.|++|.++||..+.-
T Consensus 69 ~~~~~l~~en~~L~~e~~~l~~~~~----~~~~l~~en~~L~~lL~~ 111 (276)
T PRK13922 69 ASLFDLREENEELKKELLELESRLQ----ELEQLEAENARLRELLNL 111 (276)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHhcC
Confidence 3455566666666666666654433 223556677777776653
No 144
>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=84.09 E-value=5.1 Score=48.44 Aligned_cols=79 Identities=24% Similarity=0.291 Sum_probs=60.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Q 007579 454 MRYISELEHKVQTLQTEATTLSAQLTLLQRDS--VGLTNQNNELKFRLQAMEQQAQLRDALNEALTAEVRRLKVATQEMA 531 (597)
Q Consensus 454 KqYIeELE~KVq~LQtEN~tLsaQLtlLqre~--~~L~aEN~ELK~RLqaLEqQaqLrdALnEaLkeEVqrLK~a~gEi~ 531 (597)
|..++||++--+.|..+-.-|.+||..|+.+. ..+.+++=.|+++|..|+.+...-...++.|.+|...|.+...++.
T Consensus 263 kdRveelkedN~vLleekeMLeeQLq~lrarse~~tleseiiqlkqkl~dm~~erdtdr~kteeL~eEnstLq~q~eqL~ 342 (1195)
T KOG4643|consen 263 KDRVEELKEDNRVLLEEKEMLEEQLQKLRARSEGATLESEIIQLKQKLDDMRSERDTDRHKTEELHEENSTLQVQKEQLD 342 (1195)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhh
Confidence 34466666666666667777777777777666 7778888899999999988887778888999999999988876654
Q ss_pred C
Q 007579 532 S 532 (597)
Q Consensus 532 ~ 532 (597)
.
T Consensus 343 ~ 343 (1195)
T KOG4643|consen 343 G 343 (1195)
T ss_pred h
Confidence 3
No 145
>PF15035 Rootletin: Ciliary rootlet component, centrosome cohesion
Probab=83.99 E-value=16 Score=36.14 Aligned_cols=56 Identities=13% Similarity=0.205 Sum_probs=42.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007579 455 RYISELEHKVQTLQTEATTLSAQLTLLQRDSVGLTNQNNELKFRLQAMEQQAQLRD 510 (597)
Q Consensus 455 qYIeELE~KVq~LQtEN~tLsaQLtlLqre~~~L~aEN~ELK~RLqaLEqQaqLrd 510 (597)
..++|=..++..|...|+-|+.++......+..|..++..|+..+..+.+++..++
T Consensus 67 ~rLeEEqqR~~~L~qvN~lLReQLEq~~~~N~~L~~dl~klt~~~~~l~~eL~~ke 122 (182)
T PF15035_consen 67 IRLEEEQQRSEELAQVNALLREQLEQARKANEALQEDLQKLTQDWERLRDELEQKE 122 (182)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556666777788888888888888888888888888888888777665555554
No 146
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=83.88 E-value=36 Score=36.14 Aligned_cols=7 Identities=14% Similarity=-0.088 Sum_probs=2.7
Q ss_pred ccccchh
Q 007579 356 HYRSVSM 362 (597)
Q Consensus 356 H~RS~Sm 362 (597)
|.|=.|.
T Consensus 125 ~aRl~ak 131 (312)
T smart00787 125 FARLEAK 131 (312)
T ss_pred HHHHHHH
Confidence 3333333
No 147
>cd07596 BAR_SNX The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=83.84 E-value=38 Score=31.71 Aligned_cols=19 Identities=26% Similarity=0.307 Sum_probs=8.9
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 007579 506 AQLRDALNEALTAEVRRLK 524 (597)
Q Consensus 506 aqLrdALnEaLkeEVqrLK 524 (597)
..++..+.+.+...|..-+
T Consensus 188 ~dlk~~l~~~~~~qi~~~~ 206 (218)
T cd07596 188 RDLKAALKEFARLQVQYAE 206 (218)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3444555555544444333
No 148
>KOG4807 consensus F-actin binding protein, regulates actin cytoskeletal organization [Cytoskeleton]
Probab=83.78 E-value=14 Score=41.13 Aligned_cols=91 Identities=25% Similarity=0.294 Sum_probs=58.7
Q ss_pred HHHHhhHHHHHH--HHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007579 438 RILANRQSAARS--KERKMRYISELEHKVQ--------------TLQTEATTLSAQLTLLQRDSVGLTNQNNELKFRLQA 501 (597)
Q Consensus 438 RILaNRESAaRS--ReRKKqYIeELE~KVq--------------~LQtEN~tLsaQLtlLqre~~~L~aEN~ELK~RLqa 501 (597)
|+|+.--+|--| -.=|+.|-+|||+++. +...|...+..++..|..+|..---||..|...+++
T Consensus 374 rLLAEETAATiSAIEAMKnAhrEEmeRELeKsqSvnsdveaLRrQyleelqsvqRELeVLSEQYSQKCLEnahLaqalEa 453 (593)
T KOG4807|consen 374 RLLAEETAATISAIEAMKNAHREEMERELEKSQSVNSDVEALRRQYLEELQSVQRELEVLSEQYSQKCLENAHLAQALEA 453 (593)
T ss_pred hhhhhhhhhhhHHHHHHHHHHHHHHHHHHHhhhccccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444333 3458889999999876 344566667777777777777777777777766654
Q ss_pred HHHHHH-------HHH----HHHHHHHHHHHHHHHHhc
Q 007579 502 MEQQAQ-------LRD----ALNEALTAEVRRLKVATQ 528 (597)
Q Consensus 502 LEqQaq-------Lrd----ALnEaLkeEVqrLK~a~g 528 (597)
-++.+. -.. .||..|.+||.+||-.+.
T Consensus 454 erqaLRqCQrEnQELnaHNQELnnRLaaEItrLRtllt 491 (593)
T KOG4807|consen 454 ERQALRQCQRENQELNAHNQELNNRLAAEITRLRTLLT 491 (593)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence 433211 111 357778899999998653
No 149
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=83.64 E-value=6.7 Score=37.10 Aligned_cols=49 Identities=27% Similarity=0.445 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHH
Q 007579 457 ISELEHKVQTLQTEATTLSAQLTLLQRDS--VGLTNQNNELKFRLQAMEQQ 505 (597)
Q Consensus 457 IeELE~KVq~LQtEN~tLsaQLtlLqre~--~~L~aEN~ELK~RLqaLEqQ 505 (597)
|.+|+.++..|+.++..|..++..|.... ..|..+..+|+..+..|+.+
T Consensus 81 i~~L~~el~~l~~~~k~l~~eL~~L~~~~t~~el~~~i~~l~~e~~~l~~k 131 (169)
T PF07106_consen 81 IKELREELAELKKEVKSLEAELASLSSEPTNEELREEIEELEEEIEELEEK 131 (169)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 55666666666666666666666655542 33444444444444444433
No 150
>PF12777 MT: Microtubule-binding stalk of dynein motor; InterPro: IPR024743 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules (D1-6), of which four correspond to the ATP binding sites with P-loop signatures, and two are modules in which the P loop has been lost in evolution. This domain occurs between D4 and D5 and includes the two predicted alpha-helical coiled coil segments that form the stalk supporting the ATP-sensitive microtubule binding component [].; PDB: 3VKH_A 3VKG_A 3ERR_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 2RR7_A.
Probab=83.62 E-value=5.9 Score=41.68 Aligned_cols=63 Identities=22% Similarity=0.312 Sum_probs=39.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007579 458 SELEHKVQTLQTEATTLSAQLTLLQRDSVGLTNQNNELKFRLQAMEQQAQLRDALNEALTAEV 520 (597)
Q Consensus 458 eELE~KVq~LQtEN~tLsaQLtlLqre~~~L~aEN~ELK~RLqaLEqQaqLrdALnEaLkeEV 520 (597)
.+.+.+++..+.+...|..+|..|+.++.....+...|..+++..+..+.....|...|..|.
T Consensus 231 ~~~~~~L~~~~~~l~~l~~~l~~l~~~~~~~~~e~~~l~~~~~~~~~kl~rA~~Li~~L~~E~ 293 (344)
T PF12777_consen 231 EEAEEQLAEKQAELAELEEKLAALQKEYEEAQKEKQELEEEIEETERKLERAEKLISGLSGEK 293 (344)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccHHHHHhhhcchh
Confidence 445555555555666666666666777777777777777777776666665555655555444
No 151
>cd07666 BAR_SNX7 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 7. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. The specific function of SNX7 is still unknown. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=83.57 E-value=24 Score=36.47 Aligned_cols=79 Identities=16% Similarity=0.246 Sum_probs=54.9
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHH
Q 007579 435 RAKRILANRQSAARSKERKMRYISELEHKVQTLQTEATTLSAQLTLLQRDSVGLTNQNNELKFRLQAMEQQ--AQLRDAL 512 (597)
Q Consensus 435 R~KRILaNRESAaRSReRKKqYIeELE~KVq~LQtEN~tLsaQLtlLqre~~~L~aEN~ELK~RLqaLEqQ--aqLrdAL 512 (597)
-+|=+++-|+-++---++|.+|+..+......+.+|...|..++... |+.||..++..+.+ ..++.++
T Consensus 150 slK~vlk~R~~~Q~~le~k~e~l~k~~~dr~~~~~ev~~~e~kve~a----------~~~~k~e~~Rf~~~k~~D~k~~~ 219 (243)
T cd07666 150 TLMGVIKRRDQIQAELDSKVEALANKKADRDLLKEEIEKLEDKVECA----------NNALKADWERWKQNMQTDLRSAF 219 (243)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34667888888888888888888886554456666555555555444 66688888888655 6778888
Q ss_pred HHHHHHHHHHH
Q 007579 513 NEALTAEVRRL 523 (597)
Q Consensus 513 nEaLkeEVqrL 523 (597)
.+.+..-|+.-
T Consensus 220 ~~yae~~i~~~ 230 (243)
T cd07666 220 TDMAENNISYY 230 (243)
T ss_pred HHHHHHHHHHH
Confidence 88776555443
No 152
>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function.
Probab=83.46 E-value=19 Score=39.33 Aligned_cols=22 Identities=27% Similarity=0.431 Sum_probs=10.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 007579 485 SVGLTNQNNELKFRLQAMEQQA 506 (597)
Q Consensus 485 ~~~L~aEN~ELK~RLqaLEqQa 506 (597)
...+..||..|+.+|+++.+++
T Consensus 136 i~~~~EEn~~lqlqL~~l~~e~ 157 (401)
T PF06785_consen 136 IRHLREENQCLQLQLDALQQEC 157 (401)
T ss_pred HHHHHHHHHHHHHhHHHHHHHH
Confidence 3344445555555555554444
No 153
>PF07200 Mod_r: Modifier of rudimentary (Mod(r)) protein; InterPro: IPR009851 This entry represents a conserved region approximately 150 residues long within a number of eukaryotic proteins that show homology with Drosophila melanogaster Modifier of rudimentary (Mod(r)) proteins. The N-terminal half of Mod(r) proteins is acidic, whereas the C-terminal half is basic [], and both of these regions are represented in this family.; PDB: 2CAZ_F 2P22_C 2F66_F.
Probab=83.42 E-value=37 Score=31.32 Aligned_cols=76 Identities=18% Similarity=0.281 Sum_probs=28.6
Q ss_pred ChHHHhhhcchHH-HHhhhccChHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007579 412 SGAELKKIMANEK-LAEIALTDPKRAKRILANRQSAARSKERKMRYISELEHKVQTLQTEATTLSAQLTLLQRDSVGL 488 (597)
Q Consensus 412 s~~E~KKim~~ek-LaElAl~DpKR~KRILaNRESAaRSReRKKqYIeELE~KVq~LQtEN~tLsaQLtlLqre~~~L 488 (597)
|-.|.+.++.++. +.++...-| .++.+...++....+-..=.+....++.++..+..+...+..++..|+.++..+
T Consensus 5 S~~eL~~Ll~d~~~l~~~v~~l~-~~~~~~~~~~~l~~~n~~lAe~nL~~~~~l~~~r~~l~~~~~~~~~L~~~~~~k 81 (150)
T PF07200_consen 5 STEELQELLSDEEKLDAFVKSLP-QVQELQQEREELLAENEELAEQNLSLEPELEELRSQLQELYEELKELESEYQEK 81 (150)
T ss_dssp TTHHHHHHHHH-HHHHHHGGGGS---HHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHcCHHHHHHHHHcCH-HHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456666666543 334332211 133444444444443333333333344444444333333333333333333333
No 154
>PRK10698 phage shock protein PspA; Provisional
Probab=83.37 E-value=31 Score=34.71 Aligned_cols=58 Identities=21% Similarity=0.305 Sum_probs=48.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007579 455 RYISELEHKVQTLQTEATTLSAQLTLLQRDSVGLTNQNNELKFRLQAMEQQAQLRDAL 512 (597)
Q Consensus 455 qYIeELE~KVq~LQtEN~tLsaQLtlLqre~~~L~aEN~ELK~RLqaLEqQaqLrdAL 512 (597)
..+..|+..+...+.....|..++..|+..+..+.+....|+.|...-+-+.++...+
T Consensus 99 ~~~~~l~~~~~~~~~~~~~L~~~l~~L~~ki~eak~k~~~L~aR~~~A~a~~~~~~~~ 156 (222)
T PRK10698 99 DLIATLEHEVTLVDETLARMKKEIGELENKLSETRARQQALMLRHQAASSSRDVRRQL 156 (222)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456678888888888888999999999999999999999999988888777777654
No 155
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=83.33 E-value=13 Score=42.61 Aligned_cols=56 Identities=18% Similarity=0.357 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007579 455 RYISELEHKVQTLQTEATTLSAQLTLLQRDSVGLTNQNNELKFRLQAMEQQAQLRD 510 (597)
Q Consensus 455 qYIeELE~KVq~LQtEN~tLsaQLtlLqre~~~L~aEN~ELK~RLqaLEqQaqLrd 510 (597)
+-+++|+.+++.|..+...+..++..+......+..+..+.+.....++++..++.
T Consensus 328 ~el~~l~~~l~~l~~~i~~~~~~~~~l~~~~~q~~~e~~~~~~~~~~le~~~~l~~ 383 (594)
T PF05667_consen 328 QELEELQEQLDELESQIEELEAEIKMLKSSLKQLEEELEEKEAENEELEEELKLKK 383 (594)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444444444444444444444444444444444433
No 156
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=83.24 E-value=30 Score=40.60 Aligned_cols=37 Identities=16% Similarity=0.290 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007579 453 KMRYISELEHKVQTLQTEATTLSAQLTLLQRDSVGLT 489 (597)
Q Consensus 453 KKqYIeELE~KVq~LQtEN~tLsaQLtlLqre~~~L~ 489 (597)
..+.+.+|+.+.+.|+.....|..+++.+......|+
T Consensus 577 Ql~~L~~l~e~~~~l~~~ae~LaeR~e~a~d~Qe~L~ 613 (717)
T PF10168_consen 577 QLKELQELQEERKSLRESAEKLAERYEEAKDKQEKLM 613 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444555555555444444444444444333333
No 157
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=82.84 E-value=30 Score=36.29 Aligned_cols=48 Identities=23% Similarity=0.249 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007579 458 SELEHKVQTLQTEATTLSAQLTLLQRDSVGLTNQNNELKFRLQAMEQQ 505 (597)
Q Consensus 458 eELE~KVq~LQtEN~tLsaQLtlLqre~~~L~aEN~ELK~RLqaLEqQ 505 (597)
++||.++..++.+...|..+.+.|+.....|.-+-..|+.|+..|+..
T Consensus 159 eele~e~ee~~erlk~le~E~s~LeE~~~~l~~ev~~L~~r~~ELe~~ 206 (290)
T COG4026 159 EELEAEYEEVQERLKRLEVENSRLEEMLKKLPGEVYDLKKRWDELEPG 206 (290)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHhccc
Confidence 333444444444444444444444444444444444455555544443
No 158
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=82.49 E-value=16 Score=37.82 Aligned_cols=22 Identities=32% Similarity=0.383 Sum_probs=8.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 007579 462 HKVQTLQTEATTLSAQLTLLQR 483 (597)
Q Consensus 462 ~KVq~LQtEN~tLsaQLtlLqr 483 (597)
.++..++.+...+..++..++.
T Consensus 203 ~~~~~~~~~l~~~~~~l~~~~~ 224 (423)
T TIGR01843 203 RERAEAQGELGRLEAELEVLKR 224 (423)
T ss_pred HHHHHHHhHHHHHHHHHHHHHH
Confidence 3333333333333333333333
No 159
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=82.27 E-value=7.9 Score=39.64 Aligned_cols=47 Identities=11% Similarity=0.290 Sum_probs=40.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007579 456 YISELEHKVQTLQTEATTLSAQLTLLQRDSVGLTNQNNELKFRLQAM 502 (597)
Q Consensus 456 YIeELE~KVq~LQtEN~tLsaQLtlLqre~~~L~aEN~ELK~RLqaL 502 (597)
-+.+|..+++.|+.|+..|+.+|+.++.+...|....++|-..|..+
T Consensus 55 ~~~~l~~ql~~lq~ev~~LrG~~E~~~~~l~~~~~rq~~~y~dld~r 101 (263)
T PRK10803 55 LLTQLQQQLSDNQSDIDSLRGQIQENQYQLNQVVERQKQIYLQIDSL 101 (263)
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35789999999999999999999999998888888888888777654
No 160
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=82.21 E-value=13 Score=47.83 Aligned_cols=94 Identities=24% Similarity=0.306 Sum_probs=76.0
Q ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007579 439 ILANRQSAARSKERKMRYISELEHKVQTLQTEATTLSAQLTLLQRDSVGLTNQNNELKFRLQAMEQQAQLRDALNEALTA 518 (597)
Q Consensus 439 ILaNRESAaRSReRKKqYIeELE~KVq~LQtEN~tLsaQLtlLqre~~~L~aEN~ELK~RLqaLEqQaqLrdALnEaLke 518 (597)
...-.+.|+++++-=+..+..+|++++.|+.|+.+|+..+..+.+....+..|..|+..++..+-.+.-..-.....|.+
T Consensus 1644 lq~~~e~~~~~~~e~~~q~~~aerr~~~l~~E~eeL~~~l~~~~Rarr~aE~e~~E~~e~i~~~~~~~s~l~~~KrklE~ 1723 (1930)
T KOG0161|consen 1644 LQRELEDAQRAREELLEQLAEAERRLAALQAELEELREKLEALERARRQAELELEELAERVNELNAQNSSLTAEKRKLEA 1723 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhhcccchhhHHHHHHH
Confidence 44567899999999999999999999999999999999999999999999999999999988876664455555556666
Q ss_pred HHHHHHHHhccccC
Q 007579 519 EVRRLKVATQEMAS 532 (597)
Q Consensus 519 EVqrLK~a~gEi~~ 532 (597)
||..|...+.+...
T Consensus 1724 ~i~~l~~elee~~~ 1737 (1930)
T KOG0161|consen 1724 EIAQLQSELEEEQS 1737 (1930)
T ss_pred HHHHHHHHHHHHHH
Confidence 66666666655443
No 161
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=81.94 E-value=12 Score=35.30 Aligned_cols=48 Identities=27% Similarity=0.351 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007579 455 RYISELEHKVQTLQTEATTLSAQLTLLQRDSVGLTNQNNELKFRLQAM 502 (597)
Q Consensus 455 qYIeELE~KVq~LQtEN~tLsaQLtlLqre~~~L~aEN~ELK~RLqaL 502 (597)
...++||.+++.|+.++..+-.+|..|+..+..|..+-..|..+|..+
T Consensus 14 ~r~e~~e~~~K~le~~~~~~E~EI~sL~~K~~~lE~eld~~~~~l~~~ 61 (143)
T PF12718_consen 14 DRAEELEAKVKQLEQENEQKEQEITSLQKKNQQLEEELDKLEEQLKEA 61 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345666666666666666666666666555555555555555555444
No 162
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=81.93 E-value=33 Score=40.54 Aligned_cols=38 Identities=21% Similarity=0.377 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHH
Q 007579 465 QTLQTEATTLSAQLTLLQ---RDSVGLTNQNNELKFRLQAM 502 (597)
Q Consensus 465 q~LQtEN~tLsaQLtlLq---re~~~L~aEN~ELK~RLqaL 502 (597)
..|+.||-.|.++|..|. -++.+|..|++.|...++.|
T Consensus 100 selEeENislQKqvs~Lk~sQvefE~~Khei~rl~Ee~~~l 140 (717)
T PF09730_consen 100 SELEEENISLQKQVSVLKQSQVEFEGLKHEIKRLEEEIELL 140 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 345555555555555553 24555555555555555444
No 163
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=81.81 E-value=29 Score=36.56 Aligned_cols=56 Identities=18% Similarity=0.288 Sum_probs=39.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007579 450 KERKMRYISELEHKVQTLQTEATTLSAQLTLLQRDSVGLTNQNNELKFRLQAMEQQ 505 (597)
Q Consensus 450 ReRKKqYIeELE~KVq~LQtEN~tLsaQLtlLqre~~~L~aEN~ELK~RLqaLEqQ 505 (597)
...+..-+.+|+..++.++.+...|-.++..++.....+..++.+++..|..|+.+
T Consensus 33 i~~~ds~l~~~~~~~~~~q~ei~~L~~qi~~~~~k~~~~~~~i~~~~~eik~l~~e 88 (265)
T COG3883 33 IQNQDSKLSELQKEKKNIQNEIESLDNQIEEIQSKIDELQKEIDQSKAEIKKLQKE 88 (265)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455556777777777777777777777777777777777777777777766555
No 164
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=81.58 E-value=36 Score=38.82 Aligned_cols=44 Identities=23% Similarity=0.197 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007579 456 YISELEHKVQTLQTEATTLSAQLTLLQRDSVGLTNQNNELKFRL 499 (597)
Q Consensus 456 YIeELE~KVq~LQtEN~tLsaQLtlLqre~~~L~aEN~ELK~RL 499 (597)
.+.+|+.+++.++.+...+..++..++++...+..+...++.++
T Consensus 422 ~i~~l~e~l~~l~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 465 (650)
T TIGR03185 422 QIAQLLEELGEAQNELFRSEAEIEELLRQLETLKEAIEALRKTL 465 (650)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444444444444444444443333
No 165
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=81.28 E-value=18 Score=43.18 Aligned_cols=20 Identities=55% Similarity=0.866 Sum_probs=13.4
Q ss_pred ccccCCCccccccCCCCCCCCCCCCCCC
Q 007579 113 SRSLSQPSSFFSLDSLPPLSPSPFRDSP 140 (597)
Q Consensus 113 srslsqp~~ffs~dsLpplsp~p~~~~~ 140 (597)
+=|.+|| |||.-|-+...++
T Consensus 114 sls~~qp--------L~~a~p~~m~~s~ 133 (1118)
T KOG1029|consen 114 SLSYSQP--------LPPAAPRRMSSSP 133 (1118)
T ss_pred CcCcCCC--------CCcccccccCCCc
Confidence 4455666 8888887766544
No 166
>PRK13922 rod shape-determining protein MreC; Provisional
Probab=81.22 E-value=9.9 Score=38.38 Aligned_cols=43 Identities=23% Similarity=0.296 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007579 453 KMRYISELEHKVQTLQTEATTLSAQLTLLQRDSVGLTNQNNELKFRL 499 (597)
Q Consensus 453 KKqYIeELE~KVq~LQtEN~tLsaQLtlLqre~~~L~aEN~ELK~RL 499 (597)
....+.+|..+.+.|+.|+..|+.++..+ ..|..||.+|+.-|
T Consensus 67 ~~~~~~~l~~en~~L~~e~~~l~~~~~~~----~~l~~en~~L~~lL 109 (276)
T PRK13922 67 SLASLFDLREENEELKKELLELESRLQEL----EQLEAENARLRELL 109 (276)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHh
Confidence 33344444444444444444444444333 24566666666544
No 167
>KOG1853 consensus LIS1-interacting protein NUDE [Cytoskeleton]
Probab=81.05 E-value=29 Score=36.86 Aligned_cols=53 Identities=13% Similarity=0.169 Sum_probs=31.1
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007579 441 ANRQSAARSKERKMRYISELEHKVQTLQTEATTLSAQLTLLQRDSVGLTNQNN 493 (597)
Q Consensus 441 aNRESAaRSReRKKqYIeELE~KVq~LQtEN~tLsaQLtlLqre~~~L~aEN~ 493 (597)
+|.+.---+|.-=-+.++.||..+.++......|.+-|-.|++.+..|+.-.+
T Consensus 77 ~~Kek~e~q~~q~y~q~s~Leddlsqt~aikeql~kyiReLEQaNDdLErakR 129 (333)
T KOG1853|consen 77 RNKEKQEDQRVQFYQQESQLEDDLSQTHAIKEQLRKYIRELEQANDDLERAKR 129 (333)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHhhh
Confidence 34443333444444456667777776666666677777777666666665443
No 168
>PRK02224 chromosome segregation protein; Provisional
Probab=81.04 E-value=37 Score=39.40 Aligned_cols=20 Identities=25% Similarity=0.376 Sum_probs=8.3
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 007579 459 ELEHKVQTLQTEATTLSAQL 478 (597)
Q Consensus 459 ELE~KVq~LQtEN~tLsaQL 478 (597)
+.+.++..|+.+...|...+
T Consensus 534 ~~~~~~~~l~~e~~~l~~~~ 553 (880)
T PRK02224 534 EKRERAEELRERAAELEAEA 553 (880)
T ss_pred hHHHHHHHHHHHHHHHHHHH
Confidence 33333444444444444444
No 169
>PF09325 Vps5: Vps5 C terminal like; InterPro: IPR015404 Vps5 is a sorting nexin that functions in membrane trafficking. This is the C-terminal dimerisation domain [].
Probab=80.90 E-value=49 Score=31.96 Aligned_cols=81 Identities=15% Similarity=0.250 Sum_probs=39.8
Q ss_pred HHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHH
Q 007579 444 QSAARSKERKMRYISELEHK-------VQTLQTEATTLSAQLTLLQRDSVGLTNQNNELKFRLQAMEQQ--AQLRDALNE 514 (597)
Q Consensus 444 ESAaRSReRKKqYIeELE~K-------Vq~LQtEN~tLsaQLtlLqre~~~L~aEN~ELK~RLqaLEqQ--aqLrdALnE 514 (597)
+.|...=.||+..++.|+.. +..++.+...+..++..++.++..+. ..++..+..++.+ ..++..+.+
T Consensus 138 ~~a~~~l~kkk~~~~kl~~~~~~~~~k~~~~~~ei~~~~~~~~~~~~~~~~is---~~~k~E~~rf~~~k~~d~k~~l~~ 214 (236)
T PF09325_consen 138 QNAEKELQKKKAQLEKLKASGKNRQDKVEQAENEIEEAERRVEQAKDEFEEIS---ENIKKELERFEKEKVKDFKSMLEE 214 (236)
T ss_pred HHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344445555544444433 44555555555555555555444442 2344555554332 555666666
Q ss_pred HHHHHHHHHHHHh
Q 007579 515 ALTAEVRRLKVAT 527 (597)
Q Consensus 515 aLkeEVqrLK~a~ 527 (597)
.+...|+.-+..+
T Consensus 215 ~~~~~i~~~~~~~ 227 (236)
T PF09325_consen 215 YAESQIEYQKKML 227 (236)
T ss_pred HHHHHHHHHHHHH
Confidence 6655555444433
No 170
>KOG1414 consensus Transcriptional activator FOSB/c-Fos and related bZIP transcription factors [Transcription]
Probab=80.89 E-value=0.28 Score=52.70 Aligned_cols=44 Identities=30% Similarity=0.476 Sum_probs=37.8
Q ss_pred ChHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007579 432 DPKRAKRILANRQSAARSKERKMRYISELEHKVQTLQTEATTLS 475 (597)
Q Consensus 432 DpKR~KRILaNRESAaRSReRKKqYIeELE~KVq~LQtEN~tLs 475 (597)
|++|++=+.+||.+|-|+|.|||..+..|+.+...+..++..|.
T Consensus 283 ~~~~~~~lern~~aas~~r~~~k~~~~~~~~~~~~~~~~n~~l~ 326 (395)
T KOG1414|consen 283 DERRRRFLERNRAAASRCRQKKKVWVLSLEKKAEELSSENGQLL 326 (395)
T ss_pred hhhhhhhhhhhhhhhccccCCcccccccccccccchhhhhcccc
Confidence 44563335599999999999999999999999999988888887
No 171
>PF08172 CASP_C: CASP C terminal; InterPro: IPR012955 This domain is the C-terminal region of the CASP family of proteins. These are Golgi membrane proteins which are thought to have a role in vesicle transport [].; GO: 0006891 intra-Golgi vesicle-mediated transport, 0030173 integral to Golgi membrane
Probab=80.58 E-value=6 Score=40.68 Aligned_cols=38 Identities=26% Similarity=0.362 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007579 451 ERKMRYISELEHKVQTLQTEATTLSAQLTLLQRDSVGL 488 (597)
Q Consensus 451 eRKKqYIeELE~KVq~LQtEN~tLsaQLtlLqre~~~L 488 (597)
+|=++...|||.++..++.++..|+.+|..|+.++..|
T Consensus 89 DRFR~Rn~ELE~elr~~~~~~~~L~~Ev~~L~~DN~kL 126 (248)
T PF08172_consen 89 DRFRQRNAELEEELRKQQQTISSLRREVESLRADNVKL 126 (248)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344557788877777777777666666655544333
No 172
>COG2919 Septum formation initiator [Cell division and chromosome partitioning]
Probab=80.56 E-value=29 Score=31.71 Aligned_cols=78 Identities=21% Similarity=0.213 Sum_probs=46.9
Q ss_pred hHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007579 433 PKRAKRILANRQSAARSKERKMRYISELEHKVQTLQTEATTLSAQLTLLQRDSVGLTNQNNELKFRLQAMEQQAQLRDAL 512 (597)
Q Consensus 433 pKR~KRILaNRESAaRSReRKKqYIeELE~KVq~LQtEN~tLsaQLtlLqre~~~L~aEN~ELK~RLqaLEqQaqLrdAL 512 (597)
+.+.+|+|-.+..+... |+.-+---...+-.....|..+++.+++++..|..+|..|+.++..|++. ++.+
T Consensus 20 ~~~~~~~l~~~l~~~l~------~f~~~~~~g~~~~~~~~~l~~qi~~~~~e~~~L~~~~~~l~~ei~~L~dg---~~~i 90 (117)
T COG2919 20 RVRRRRILTLVLLALLA------LFQYLAWFGKNGAADVLQLQRQIAAQQAELEKLSARNTALEAEIKDLKDG---RDYI 90 (117)
T ss_pred hHHHHHHHHHHHHHHHH------HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc---HHHH
Confidence 45556666666666543 33333333334444555666666677777777778888888888777666 4555
Q ss_pred HHHHHHH
Q 007579 513 NEALTAE 519 (597)
Q Consensus 513 nEaLkeE 519 (597)
.|..+.+
T Consensus 91 ~e~AR~~ 97 (117)
T COG2919 91 EERARSE 97 (117)
T ss_pred HHHHHHH
Confidence 5554433
No 173
>PF12329 TMF_DNA_bd: TATA element modulatory factor 1 DNA binding; InterPro: IPR022092 This is the middle region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes that contains at its N-terminal section a number of leucine zippers that could potentially form coiled coil structures. The whole proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant [] cells.
Probab=80.46 E-value=32 Score=29.39 Aligned_cols=15 Identities=27% Similarity=0.321 Sum_probs=6.0
Q ss_pred HHHHHHHHHHHHHHH
Q 007579 464 VQTLQTEATTLSAQL 478 (597)
Q Consensus 464 Vq~LQtEN~tLsaQL 478 (597)
+..|..|-..|+.+.
T Consensus 14 Ia~L~eEGekLSk~e 28 (74)
T PF12329_consen 14 IAQLMEEGEKLSKKE 28 (74)
T ss_pred HHHHHHHHHHHHHHH
Confidence 334444444444333
No 174
>PF10212 TTKRSYEDQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019348 This entry represents a C-terminal 500 residue region, which contains a conserved TTKRSYEDQ motif. It is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain an N-terminal domain with a KLRAQ motif (IPR019343 from INTERPRO). The function of these proteins is not known.
Probab=80.44 E-value=14 Score=41.91 Aligned_cols=67 Identities=18% Similarity=0.251 Sum_probs=44.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007579 457 ISELEHKVQTLQTEATTLSAQLTLLQRDSVGLTNQNNELKFRLQAMEQQAQLRDALNEALTAEVRRLKVA 526 (597)
Q Consensus 457 IeELE~KVq~LQtEN~tLsaQLtlLqre~~~L~aEN~ELK~RLqaLEqQaqLrdALnEaLkeEVqrLK~a 526 (597)
++..|.+.+.+..|...+..++..|+. +|.+.-+.++.+|..|..++--.+.....-++||+.||.+
T Consensus 450 L~~aE~ek~~l~eeL~~a~~~i~~LqD---EL~TTr~NYE~QLs~MSEHLasmNeqL~~Q~eeI~~LK~~ 516 (518)
T PF10212_consen 450 LESAEKEKESLEEELKEANQNISRLQD---ELETTRRNYEEQLSMMSEHLASMNEQLAKQREEIQTLKLA 516 (518)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 344455555666666666666666654 4666677778888888777555555555667899999954
No 175
>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription. The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].
Probab=80.33 E-value=50 Score=32.28 Aligned_cols=41 Identities=27% Similarity=0.341 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007579 461 EHKVQTLQTEATTLSAQLTLLQRDSVGLTNQNNELKFRLQA 501 (597)
Q Consensus 461 E~KVq~LQtEN~tLsaQLtlLqre~~~L~aEN~ELK~RLqa 501 (597)
+..+..+......|...+..|+..+..+..+-..|+.+...
T Consensus 104 ~~~~~~~~~~~~~l~~~l~~l~~kl~e~k~k~~~l~ar~~~ 144 (221)
T PF04012_consen 104 EQQLDQAEAQVEKLKEQLEELEAKLEELKSKREELKARENA 144 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333344444444444444444444444444333
No 176
>PF07851 TMPIT: TMPIT-like protein; InterPro: IPR012926 A number of members of this family are annotated as being transmembrane proteins induced by tumour necrosis factor alpha, but no literature was found to support this. ; GO: 0016021 integral to membrane
Probab=80.21 E-value=22 Score=38.46 Aligned_cols=75 Identities=17% Similarity=0.210 Sum_probs=43.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHH
Q 007579 455 RYISELEHKVQTLQTEATTLSAQLTLLQRDSVGLTNQNNELKFRLQAMEQQAQL--------RDALNEALTAEVRRLKVA 526 (597)
Q Consensus 455 qYIeELE~KVq~LQtEN~tLsaQLtlLqre~~~L~aEN~ELK~RLqaLEqQaqL--------rdALnEaLkeEVqrLK~a 526 (597)
+-.++|+.+.+.||+.......+++++..-..........-|.+|..|...++- .....+.|++++.+.+..
T Consensus 4 eEW~eL~~efq~Lqethr~Y~qKleel~~lQ~~C~ssI~~QkkrLk~L~~sLk~~~~~~~~e~~~~i~~L~~~Ik~r~~~ 83 (330)
T PF07851_consen 4 EEWEELQKEFQELQETHRSYKQKLEELSKLQDKCSSSISHQKKRLKELKKSLKRCKKSLSAEERELIEKLEEDIKERRCQ 83 (330)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCChhHHHHHHHHHHHHHHHHhh
Confidence 456788888999988888888877777655554444444433444333322111 234455566666665544
Q ss_pred hcc
Q 007579 527 TQE 529 (597)
Q Consensus 527 ~gE 529 (597)
..+
T Consensus 84 l~D 86 (330)
T PF07851_consen 84 LFD 86 (330)
T ss_pred HHH
Confidence 433
No 177
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=80.18 E-value=37 Score=41.39 Aligned_cols=9 Identities=44% Similarity=0.892 Sum_probs=5.8
Q ss_pred ccccchhhh
Q 007579 356 HYRSVSMDS 364 (597)
Q Consensus 356 H~RS~SmDs 364 (597)
.+|.+++|.
T Consensus 635 ~~riVTl~G 643 (1163)
T COG1196 635 KYRIVTLDG 643 (1163)
T ss_pred CceEEecCC
Confidence 456677766
No 178
>COG2900 SlyX Uncharacterized protein conserved in bacteria [Function unknown]
Probab=80.14 E-value=8.6 Score=33.52 Aligned_cols=48 Identities=23% Similarity=0.128 Sum_probs=31.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007579 455 RYISELEHKVQTLQTEATTLSAQLTLLQRDSVGLTNQNNELKFRLQAM 502 (597)
Q Consensus 455 qYIeELE~KVq~LQtEN~tLsaQLtlLqre~~~L~aEN~ELK~RLqaL 502 (597)
+.|.+||.++..-+.-...|...|++.+.....+..+-+-|..|+..+
T Consensus 8 ~Ri~eLE~r~AfQE~tieeLn~~laEq~~~i~k~q~qlr~L~~kl~~~ 55 (72)
T COG2900 8 ARIIELEIRLAFQEQTIEELNDALAEQQLVIDKLQAQLRLLTEKLKDL 55 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 356788888877777777777777776665555555555555544444
No 179
>PHA03162 hypothetical protein; Provisional
Probab=79.87 E-value=6.8 Score=37.57 Aligned_cols=27 Identities=19% Similarity=0.356 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007579 452 RKMRYISELEHKVQTLQTEATTLSAQL 478 (597)
Q Consensus 452 RKKqYIeELE~KVq~LQtEN~tLsaQL 478 (597)
+|+.-++||+.+++.|+.||..|+.+|
T Consensus 10 k~~~tmEeLaaeL~kLqmENK~LKkkl 36 (135)
T PHA03162 10 KAQPTMEDLAAEIAKLQLENKALKKKI 36 (135)
T ss_pred ccCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 355668999999999999999999998
No 180
>PF06419 COG6: Conserved oligomeric complex COG6; InterPro: IPR010490 COG6 is a component of the conserved oligomeric golgi complex, which is composed of eight different subunits and is required for normal golgi morphology and localisation.
Probab=79.70 E-value=30 Score=39.56 Aligned_cols=87 Identities=22% Similarity=0.306 Sum_probs=66.9
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007579 438 RILANRQSAARSKERKMRYISELEHKVQTLQTEATTLSAQLTLLQRDSVGLTNQNNELKFRLQAMEQQAQLRDALNEALT 517 (597)
Q Consensus 438 RILaNRESAaRSReRKKqYIeELE~KVq~LQtEN~tLsaQLtlLqre~~~L~aEN~ELK~RLqaLEqQaqLrdALnEaLk 517 (597)
|+|+.-..-.+.=..=.+.++.++..|+.|...+..+..++.....+...+..+-..|+.+.+.++.+.++..++.+..+
T Consensus 28 ~~l~~~~~~L~~f~~v~~~l~~~~~~v~~l~~~~~~~~~~l~~~~~~t~~ll~~~~~L~~~~~~~~~k~~ll~~f~~~f~ 107 (618)
T PF06419_consen 28 RLLKINQEFLKEFSPVNRQLKRLQSDVDKLNSSCDQMQDRLSAAKSETSDLLEEASELREQKEELELKKKLLDAFLERFT 107 (618)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 33333333333333445578899999999999999999999999999999999999999999999999999888877664
Q ss_pred ---HHHHHHH
Q 007579 518 ---AEVRRLK 524 (597)
Q Consensus 518 ---eEVqrLK 524 (597)
+|+..|.
T Consensus 108 Ls~~E~~~L~ 117 (618)
T PF06419_consen 108 LSEEEEDALT 117 (618)
T ss_pred CCHHHHHHHh
Confidence 4554443
No 181
>TIGR00219 mreC rod shape-determining protein MreC. MreC (murein formation C) is involved in the rod shape determination in E. coli, and more generally in cell shape determination of bacteria whether or not they are rod-shaped. Cells defective in MreC are round. Species with MreC include many of the Proteobacteria, Gram-positives, and spirochetes.
Probab=79.66 E-value=14 Score=38.41 Aligned_cols=13 Identities=31% Similarity=0.284 Sum_probs=7.5
Q ss_pred HHHHHHHHHHHhc
Q 007579 516 LTAEVRRLKVATQ 528 (597)
Q Consensus 516 LkeEVqrLK~a~g 528 (597)
|++|-++||..++
T Consensus 96 l~~EN~rLr~LL~ 108 (283)
T TIGR00219 96 LKQENVRLRELLN 108 (283)
T ss_pred HHHHHHHHHHHhc
Confidence 4556666666554
No 182
>TIGR02231 conserved hypothetical protein. This family consists of proteins over 500 amino acids long in Caenorhabditis elegans and several bacteria (Pseudomonas aeruginosa, Nostoc sp. PCC 7120, Leptospira interrogans, etc.). The function is unknown.
Probab=79.53 E-value=23 Score=39.08 Aligned_cols=7 Identities=0% Similarity=0.795 Sum_probs=2.9
Q ss_pred HHHHHHH
Q 007579 455 RYISELE 461 (597)
Q Consensus 455 qYIeELE 461 (597)
++++.+.
T Consensus 102 ~~l~~~~ 108 (525)
T TIGR02231 102 KFLEDIR 108 (525)
T ss_pred HHHHHHh
Confidence 3444443
No 183
>PF02183 HALZ: Homeobox associated leucine zipper; InterPro: IPR003106 This region is a plant specific leucine zipper that is always found associated with a homeobox []. ; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=79.47 E-value=7.5 Score=30.69 Aligned_cols=40 Identities=28% Similarity=0.392 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007579 460 LEHKVQTLQTEATTLSAQLTLLQRDSVGLTNQNNELKFRL 499 (597)
Q Consensus 460 LE~KVq~LQtEN~tLsaQLtlLqre~~~L~aEN~ELK~RL 499 (597)
||+....|......|.+....|.+++..|.+|-..|+.++
T Consensus 3 lE~Dy~~LK~~yd~Lk~~~~~L~~E~~~L~aev~~L~~kl 42 (45)
T PF02183_consen 3 LERDYDALKASYDSLKAEYDSLKKENEKLRAEVQELKEKL 42 (45)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 5555556666666666666666666666666666655554
No 184
>PRK02119 hypothetical protein; Provisional
Probab=79.37 E-value=15 Score=31.38 Aligned_cols=42 Identities=12% Similarity=0.173 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007579 457 ISELEHKVQTLQTEATTLSAQLTLLQRDSVGLTNQNNELKFR 498 (597)
Q Consensus 457 IeELE~KVq~LQtEN~tLsaQLtlLqre~~~L~aEN~ELK~R 498 (597)
+..||.++..|+...+-+...|..|.........+...|+.+
T Consensus 4 ~~~~e~Ri~~LE~rla~QE~tie~LN~~v~~Qq~~id~L~~q 45 (73)
T PRK02119 4 QQNLENRIAELEMKIAFQENLLEELNQALIEQQFVIDKMQVQ 45 (73)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566788887777777777666666655443333333333333
No 185
>PRK00888 ftsB cell division protein FtsB; Reviewed
Probab=79.31 E-value=7.5 Score=35.11 Aligned_cols=29 Identities=17% Similarity=0.310 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007579 474 LSAQLTLLQRDSVGLTNQNNELKFRLQAM 502 (597)
Q Consensus 474 LsaQLtlLqre~~~L~aEN~ELK~RLqaL 502 (597)
|.+++..+++++..|..+|..|+.++..|
T Consensus 32 l~~q~~~~~~e~~~l~~~n~~L~~eI~~L 60 (105)
T PRK00888 32 VNDQVAAQQQTNAKLKARNDQLFAEIDDL 60 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33344444444444444455555555444
No 186
>KOG1899 consensus LAR transmembrane tyrosine phosphatase-interacting protein liprin [General function prediction only]
Probab=79.30 E-value=21 Score=41.80 Aligned_cols=84 Identities=27% Similarity=0.352 Sum_probs=55.3
Q ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHH
Q 007579 437 KRILANRQSAARSKERKMRYISELEHKVQTLQTEATTLSAQ---LTLLQRDSVGLTNQNNELKFRLQAMEQQ-----AQL 508 (597)
Q Consensus 437 KRILaNRESAaRSReRKKqYIeELE~KVq~LQtEN~tLsaQ---LtlLqre~~~L~aEN~ELK~RLqaLEqQ-----aqL 508 (597)
--+|.-+..|+.-|-|-.+.+.++. -+.|.+.-.-|..+ .+.|+.+...|++|-.+||.++.+||.+ .++
T Consensus 127 vsvLteqVeaQgEKIrDLE~cie~k--r~kLnatEEmLQqellsrtsLETqKlDLmaevSeLKLkltalEkeq~e~E~K~ 204 (861)
T KOG1899|consen 127 VSVLTEQVEAQGEKIRDLETCIEEK--RNKLNATEEMLQQELLSRTSLETQKLDLMAEVSELKLKLTALEKEQNETEKKL 204 (861)
T ss_pred HHHHHHHHHHhhhhHHHHHHHHHHH--HhhhchHHHHHHHHHHhhhhHHHHHhHHHHHHHHhHHHHHHHHHHhhhHHHHH
Confidence 4578889999998888777654433 23333322223222 3788899999999999999999999743 445
Q ss_pred HHHHHHHHHHHHHHHH
Q 007579 509 RDALNEALTAEVRRLK 524 (597)
Q Consensus 509 rdALnEaLkeEVqrLK 524 (597)
|.+ |.|..||.+++
T Consensus 205 R~s--e~l~qevn~~k 218 (861)
T KOG1899|consen 205 RLS--ENLMQEVNQSK 218 (861)
T ss_pred HhH--HHHHHHHHHHH
Confidence 543 33445666443
No 187
>PF07798 DUF1640: Protein of unknown function (DUF1640); InterPro: IPR024461 This family consists of uncharacterised proteins.
Probab=79.27 E-value=17 Score=35.03 Aligned_cols=12 Identities=25% Similarity=0.448 Sum_probs=7.5
Q ss_pred CcChHHHhhhcc
Q 007579 410 EFSGAELKKIMA 421 (597)
Q Consensus 410 ~~s~~E~KKim~ 421 (597)
.|+.+..+.||.
T Consensus 15 Gft~~QAe~i~~ 26 (177)
T PF07798_consen 15 GFTEEQAEAIMK 26 (177)
T ss_pred CCCHHHHHHHHH
Confidence 477766666664
No 188
>PF07889 DUF1664: Protein of unknown function (DUF1664); InterPro: IPR012458 The members of this family are hypothetical plant proteins of unknown function. The region featured in this family is approximately 100 amino acids long.
Probab=79.06 E-value=16 Score=34.44 Aligned_cols=64 Identities=14% Similarity=0.337 Sum_probs=45.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCC
Q 007579 467 LQTEATTLSAQLTLLQRDSVGLTNQNNELKFRLQAMEQQAQLRDALNEALTAEVRRLKVATQEMASE 533 (597)
Q Consensus 467 LQtEN~tLsaQLtlLqre~~~L~aEN~ELK~RLqaLEqQaqLrdALnEaLkeEVqrLK~a~gEi~~~ 533 (597)
|..-.+.+..+|+.+ ...|..-.++|..||+.|..++.-..++.+..++||..++..+.+|...
T Consensus 41 m~~A~~~v~kql~~v---s~~l~~tKkhLsqRId~vd~klDe~~ei~~~i~~eV~~v~~dv~~i~~d 104 (126)
T PF07889_consen 41 MSDAVASVSKQLEQV---SESLSSTKKHLSQRIDRVDDKLDEQKEISKQIKDEVTEVREDVSQIGDD 104 (126)
T ss_pred HHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence 444445555555444 4466777788888888888887777788888888888888877776554
No 189
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=78.83 E-value=39 Score=37.72 Aligned_cols=67 Identities=9% Similarity=0.190 Sum_probs=46.8
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007579 441 ANRQSAARSKERKMRYISELEHKVQTLQTEATTLSAQLTLLQRDSVGLTNQNNELKFRLQAMEQQAQ 507 (597)
Q Consensus 441 aNRESAaRSReRKKqYIeELE~KVq~LQtEN~tLsaQLtlLqre~~~L~aEN~ELK~RLqaLEqQaq 507 (597)
+++...++-=+++..-|.+-..+.+.|+.+...|..++..++.+......++.+++.+|..++..+.
T Consensus 38 ~~l~q~q~ei~~~~~~i~~~~~~~~kL~~~lk~~e~~i~~~~~ql~~s~~~l~~~~~~I~~~~~~l~ 104 (420)
T COG4942 38 KQLKQIQKEIAALEKKIREQQDQRAKLEKQLKSLETEIASLEAQLIETADDLKKLRKQIADLNARLN 104 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHH
Confidence 5555666666666666666667777777777777777777777777777777777777777766544
No 190
>PRK04406 hypothetical protein; Provisional
Probab=78.79 E-value=17 Score=31.28 Aligned_cols=44 Identities=11% Similarity=0.162 Sum_probs=26.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007579 457 ISELEHKVQTLQTEATTLSAQLTLLQRDSVGLTNQNNELKFRLQ 500 (597)
Q Consensus 457 IeELE~KVq~LQtEN~tLsaQLtlLqre~~~L~aEN~ELK~RLq 500 (597)
++.||.++..|+...+-+...|..|.........+...|+.+|.
T Consensus 6 ~~~le~Ri~~LE~~lAfQE~tIe~LN~~v~~Qq~~I~~L~~ql~ 49 (75)
T PRK04406 6 IEQLEERINDLECQLAFQEQTIEELNDALSQQQLLITKMQDQMK 49 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45688888888777777777776665544444444444444333
No 191
>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain.
Probab=78.79 E-value=71 Score=34.50 Aligned_cols=16 Identities=38% Similarity=0.526 Sum_probs=7.5
Q ss_pred HHHHHHHHHHHHHhcc
Q 007579 514 EALTAEVRRLKVATQE 529 (597)
Q Consensus 514 EaLkeEVqrLK~a~gE 529 (597)
+.|.+|=..|...+.+
T Consensus 188 ~~l~~eKr~Lq~~l~~ 203 (310)
T PF09755_consen 188 DKLEAEKRRLQEKLEQ 203 (310)
T ss_pred HHHHHHHHHHHHHHcc
Confidence 3344454555555443
No 192
>PF09728 Taxilin: Myosin-like coiled-coil protein; InterPro: IPR019132 Taxilin contains an extraordinarily long coiled-coil domain in its C-terminal half and is ubiquitously expressed. It is a novel binding partner of several syntaxin family members and is possibly involved in Ca(2+)-dependent exocytosis in neuroendocrine cells []. Gamma-taxilin, described as leucine zipper protein Factor Inhibiting ATF4-mediated Transcription (FIAT), localises to the nucleus in osteoblasts and dimerises with ATF4 to form inactive dimers, thus inhibiting ATF4-mediated transcription [].
Probab=78.78 E-value=16 Score=38.48 Aligned_cols=54 Identities=17% Similarity=0.313 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007579 463 KVQTLQTEATTLSAQLTLLQRDSVGLTNQNNELKFRLQAMEQQAQLRDALNEAL 516 (597)
Q Consensus 463 KVq~LQtEN~tLsaQLtlLqre~~~L~aEN~ELK~RLqaLEqQaqLrdALnEaL 516 (597)
++..|+.||..|..+..........|..|+..+...+..+..+..-+..|-.+|
T Consensus 252 k~kklEKE~~~~k~k~e~~n~~l~~m~eer~~~~~~~~~~~~k~~kLe~LcRaL 305 (309)
T PF09728_consen 252 KIKKLEKENQTWKSKWEKSNKALIEMAEERQKLEKELEKLKKKIEKLEKLCRAL 305 (309)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444444444444444444444444444433333333333
No 193
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=78.75 E-value=50 Score=37.69 Aligned_cols=79 Identities=11% Similarity=0.159 Sum_probs=39.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HH---HHHHHHHHHHHHHHHHHHHhccc
Q 007579 455 RYISELEHKVQTLQTEATTLSAQLTLLQRDSVGLTNQNNELKFRLQAMEQQ-AQ---LRDALNEALTAEVRRLKVATQEM 530 (597)
Q Consensus 455 qYIeELE~KVq~LQtEN~tLsaQLtlLqre~~~L~aEN~ELK~RLqaLEqQ-aq---LrdALnEaLkeEVqrLK~a~gEi 530 (597)
+.+++||.++..++.+...+..++..++.+...+..+-.+|+.++...-.. +. -.+...+.+.++..+.+..+.++
T Consensus 209 ~~~~~le~el~~l~~~~e~l~~~i~~l~~ele~a~~~l~~l~~~~~~~GG~~~~~r~~Le~ei~~le~e~~e~~~~l~~l 288 (650)
T TIGR03185 209 SEIEALEAELKEQSEKYEDLAQEIAHLRNELEEAQRSLESLEKKFRSEGGDLFEEREQLERQLKEIEAARKANRAQLREL 288 (650)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555556665555555555555555555555555555555544322111 11 22233444555555566655555
Q ss_pred cCC
Q 007579 531 ASE 533 (597)
Q Consensus 531 ~~~ 533 (597)
-..
T Consensus 289 ~~~ 291 (650)
T TIGR03185 289 AAD 291 (650)
T ss_pred hcc
Confidence 444
No 194
>KOG1962 consensus B-cell receptor-associated protein and related proteins [Defense mechanisms]
Probab=78.65 E-value=11 Score=38.41 Aligned_cols=43 Identities=19% Similarity=0.250 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007579 460 LEHKVQTLQTEATTLSAQLTLLQRDSVGLTNQNNELKFRLQAM 502 (597)
Q Consensus 460 LE~KVq~LQtEN~tLsaQLtlLqre~~~L~aEN~ELK~RLqaL 502 (597)
||.+...+.++...|..++...+.+...+..+..+|+.+.+.+
T Consensus 149 ~~~~~~~~~~~~~kL~~el~~~~~~Le~~~~~~~al~Kq~e~~ 191 (216)
T KOG1962|consen 149 LEEENDKLKADLEKLETELEKKQKKLEKAQKKVDALKKQSEGL 191 (216)
T ss_pred hhhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 4444444444444444444444444444444444444444444
No 195
>PRK12704 phosphodiesterase; Provisional
Probab=78.61 E-value=91 Score=35.35 Aligned_cols=15 Identities=13% Similarity=0.175 Sum_probs=5.9
Q ss_pred HHHHHHHHHHHHHHH
Q 007579 451 ERKMRYISELEHKVQ 465 (597)
Q Consensus 451 eRKKqYIeELE~KVq 465 (597)
..+++...+.+.++.
T Consensus 53 e~~ke~~leaeeE~~ 67 (520)
T PRK12704 53 AIKKEALLEAKEEIH 67 (520)
T ss_pred HHHHHHHHHHHHHHH
Confidence 333444444443333
No 196
>PF08581 Tup_N: Tup N-terminal; InterPro: IPR013890 The N-terminal region of the Tup protein has been shown to interact with the Ssn6 transcriptional co-repressor []. ; PDB: 3VP9_B 3VP8_B.
Probab=78.58 E-value=46 Score=29.21 Aligned_cols=70 Identities=13% Similarity=0.282 Sum_probs=55.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhc
Q 007579 455 RYISELEHKVQTLQTEATTLSAQLTLLQRDSVGLTNQNNELKFRLQAMEQQ-AQLRDALNEALTAEVRRLKVATQ 528 (597)
Q Consensus 455 qYIeELE~KVq~LQtEN~tLsaQLtlLqre~~~L~aEN~ELK~RLqaLEqQ-aqLrdALnEaLkeEVqrLK~a~g 528 (597)
+.++.+..+...+..|...++.+-..++..+..-..|...++..+-.||.+ ..++ +...+||.+||.-+.
T Consensus 4 elLd~ir~Ef~~~~~e~~~~k~~~~e~e~ki~~Qi~Em~~ir~~v~eLE~~h~kmK----~~YEeEI~rLr~eLe 74 (79)
T PF08581_consen 4 ELLDAIRQEFENLSQEANSYKHQKDEYEHKINSQIQEMQQIRQKVYELEQAHRKMK----QQYEEEIARLRRELE 74 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHH
Confidence 456777788888888888888888888888888888999999999999855 4443 344679999987654
No 197
>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=78.51 E-value=30 Score=42.37 Aligned_cols=60 Identities=25% Similarity=0.225 Sum_probs=42.0
Q ss_pred hHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007579 433 PKRAKRILANRQSAARSKERKMRYISELEHKVQTLQTEATTLSAQLTLLQRDSVGLTNQN 492 (597)
Q Consensus 433 pKR~KRILaNRESAaRSReRKKqYIeELE~KVq~LQtEN~tLsaQLtlLqre~~~L~aEN 492 (597)
.+-.|-.|.||.--.---+++-.-++++-.|.-.|+.++..|+.++..|+..+..+...+
T Consensus 372 ~ralkllLEnrrlt~tleelqsss~Ee~~SK~leleke~KnLs~k~e~Leeri~ql~qq~ 431 (1195)
T KOG4643|consen 372 DRALKLLLENRRLTGTLEELQSSSYEELISKHLELEKEHKNLSKKHEILEERINQLLQQL 431 (1195)
T ss_pred HHHHHHHHHhHHHHHHHHHHhhhhHHHHHHHHHHHHHHhHhHhHHHHHHHHHHHHHHHHH
Confidence 356677888888777777777777777777777777777777777777666544443333
No 198
>KOG4403 consensus Cell surface glycoprotein STIM, contains SAM domain [General function prediction only]
Probab=78.49 E-value=14 Score=41.52 Aligned_cols=64 Identities=20% Similarity=0.307 Sum_probs=42.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhc
Q 007579 465 QTLQTEATTLSAQLTLLQRDSVGLTNQNNELKFRLQAMEQQAQLRD-ALNEALTAEVRRLKVATQ 528 (597)
Q Consensus 465 q~LQtEN~tLsaQLtlLqre~~~L~aEN~ELK~RLqaLEqQaqLrd-ALnEaLkeEVqrLK~a~g 528 (597)
+..+++...|.+++...+.+......|...|+.++.+.-.-..+++ ..++..++|++.||+++-
T Consensus 255 q~aEqsl~dlQk~Lekar~e~rnvavek~~lerkl~ea~rl~elreg~e~e~~rkelE~lR~~L~ 319 (575)
T KOG4403|consen 255 QRAEQSLEDLQKRLEKAREEQRNVAVEKLDLERKLDEAPRLSELREGVENETSRKELEQLRVALE 319 (575)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhchhhhhhhHHHHHhhhhhhhhhhcchhHHHHHHHHHHHHHHHH
Confidence 4445555667777777777777788888888877763322222332 457778888888877663
No 199
>PF09744 Jnk-SapK_ap_N: JNK_SAPK-associated protein-1; InterPro: IPR019143 This entry represents the N-terminal 200 residues of a set of proteins conserved from yeasts to humans. Most of the proteins in this entry have a RhoGEF domain (IPR000219 from INTERPRO) at their C-terminal end.
Probab=78.40 E-value=50 Score=32.17 Aligned_cols=39 Identities=18% Similarity=0.221 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007579 465 QTLQTEATTLSAQLTLLQRDSVGLTNQNNELKFRLQAME 503 (597)
Q Consensus 465 q~LQtEN~tLsaQLtlLqre~~~L~aEN~ELK~RLqaLE 503 (597)
..+..+...|..++..|+.++..|....+.+..++..|+
T Consensus 85 d~~~~e~k~L~~~v~~Le~e~r~L~~~~~~~~~q~~rle 123 (158)
T PF09744_consen 85 DQWRQERKDLQSQVEQLEEENRQLELKLKNLSDQSSRLE 123 (158)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhccccc
Confidence 456667777777777777777777766666666555554
No 200
>PF10211 Ax_dynein_light: Axonemal dynein light chain; InterPro: IPR019347 Axonemal dynein light chain proteins play a dynamic role in flagellar and cilial motility. Eukaryotic cilia and flagella are complex organelles consisting of a core structure, the axoneme, which is composed of nine microtubule doublets forming a cylinder that surrounds a pair of central singlet microtubules. This ultra-structural arrangement seems to be one of the most stable micro-tubular assemblies known and is responsible for the flagellar and ciliary movement of a large number of organisms ranging from protozoan to mammals. This light chain interacts directly with the N-terminal half of the heavy chains [].
Probab=78.34 E-value=42 Score=33.12 Aligned_cols=57 Identities=25% Similarity=0.338 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhc
Q 007579 472 TTLSAQLTLLQRDSVGLTNQNNELKFRLQAMEQQAQ-LRDALNEALTAEVRRLKVATQ 528 (597)
Q Consensus 472 ~tLsaQLtlLqre~~~L~aEN~ELK~RLqaLEqQaq-LrdALnEaLkeEVqrLK~a~g 528 (597)
..|..++..|+.+...|..+-.+|+.+++.++.... .+.........||+.||....
T Consensus 123 ~~l~~~i~~L~~e~~~L~~~~~~l~~~~e~~ek~~~e~~~~~~k~~~~ei~~lk~~~~ 180 (189)
T PF10211_consen 123 QELEEEIEELEEEKEELEKQVQELKNKCEQLEKREEELRQEEEKKHQEEIDFLKKQNQ 180 (189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555555555555555555555554432 333444555556666655543
No 201
>TIGR00219 mreC rod shape-determining protein MreC. MreC (murein formation C) is involved in the rod shape determination in E. coli, and more generally in cell shape determination of bacteria whether or not they are rod-shaped. Cells defective in MreC are round. Species with MreC include many of the Proteobacteria, Gram-positives, and spirochetes.
Probab=78.33 E-value=8.6 Score=39.90 Aligned_cols=37 Identities=24% Similarity=0.243 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHH
Q 007579 463 KVQTLQTEATTLSAQLTLLQRDSV----GLTNQNNELKFRL 499 (597)
Q Consensus 463 KVq~LQtEN~tLsaQLtlLqre~~----~L~aEN~ELK~RL 499 (597)
.+..|+.||..|++++..|+.+.. .|..||.+||.-|
T Consensus 67 ~~~~l~~EN~~Lr~e~~~l~~~~~~~~~~l~~EN~rLr~LL 107 (283)
T TIGR00219 67 DVNNLEYENYKLRQELLKKNQQLEILTQNLKQENVRLRELL 107 (283)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344566777777777665533322 2555666555533
No 202
>PRK13169 DNA replication intiation control protein YabA; Reviewed
Probab=78.23 E-value=13 Score=34.39 Aligned_cols=40 Identities=20% Similarity=0.330 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007579 459 ELEHKVQTLQTEATTLSAQLTLLQRDSVGLTNQNNELKFR 498 (597)
Q Consensus 459 ELE~KVq~LQtEN~tLsaQLtlLqre~~~L~aEN~ELK~R 498 (597)
+|=.+|..|+.....|..++..|+.....|..||..|+..
T Consensus 5 elfd~l~~le~~l~~l~~el~~LK~~~~el~EEN~~L~iE 44 (110)
T PRK13169 5 EIFDALDDLEQNLGVLLKELGALKKQLAELLEENTALRLE 44 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555666666666666666666666666666655543
No 203
>TIGR00414 serS seryl-tRNA synthetase. This model represents the seryl-tRNA synthetase found in most organisms. This protein is a class II tRNA synthetase, and is recognized by the pfam model tRNA-synt_2b. The seryl-tRNA synthetases of two archaeal species, Methanococcus jannaschii and Methanobacterium thermoautotrophicum, differ considerably and are included in a different model.
Probab=78.12 E-value=28 Score=38.05 Aligned_cols=29 Identities=21% Similarity=0.289 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007579 457 ISELEHKVQTLQTEATTLSAQLTLLQRDS 485 (597)
Q Consensus 457 IeELE~KVq~LQtEN~tLsaQLtlLqre~ 485 (597)
|.+|..+...|+.+...|+++...+.++.
T Consensus 32 i~~ld~~~r~~~~~~~~l~~erN~~sk~i 60 (418)
T TIGR00414 32 LIALDDERKKLLSEIEELQAKRNELSKQI 60 (418)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444444433
No 204
>KOG4001 consensus Axonemal dynein light chain [Cytoskeleton]
Probab=78.05 E-value=35 Score=35.29 Aligned_cols=52 Identities=13% Similarity=0.091 Sum_probs=33.1
Q ss_pred HHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007579 444 QSAARSKERKMRYIS----ELEHKVQTLQTEATTLSAQLTLLQRDSVGLTNQNNEL 495 (597)
Q Consensus 444 ESAaRSReRKKqYIe----ELE~KVq~LQtEN~tLsaQLtlLqre~~~L~aEN~EL 495 (597)
+|+--.-+||.-.++ .++.+++.|+.++..|..+|+.++..+..-...+.|+
T Consensus 170 eSsvAfGmRKALqae~ek~~~~~~~k~le~~k~~Le~~ia~~k~K~e~~e~r~~E~ 225 (259)
T KOG4001|consen 170 ESSVAFGMRKALQAENEKTRATTEWKVLEDKKKELELKIAQLKKKLETDEIRSEEE 225 (259)
T ss_pred HHHHHHHHHHHHHHhhhhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhhhHHH
Confidence 455556666665554 4677777777777777777777766555544444443
No 205
>PF09738 DUF2051: Double stranded RNA binding protein (DUF2051); InterPro: IPR019139 This entry represents transcriptional repressors which preferentially bind to the GC-rich consensus sequence (5'-AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA. They may control smooth muscle cell proliferation following artery injury through PDGFA repression and may also bind double-stranded RNA. They interact with the leucine-rich repeat domain of human flightless-I (FliI) protein.
Probab=77.96 E-value=25 Score=37.46 Aligned_cols=18 Identities=28% Similarity=0.362 Sum_probs=13.0
Q ss_pred hhhccChHHHHHHHHhhH
Q 007579 427 EIALTDPKRAKRILANRQ 444 (597)
Q Consensus 427 ElAl~DpKR~KRILaNRE 444 (597)
+|+.+++|-.|=|+.|.+
T Consensus 85 ~l~evEekyrkAMv~naQ 102 (302)
T PF09738_consen 85 SLAEVEEKYRKAMVSNAQ 102 (302)
T ss_pred HHHHHHHHHHHHHHHHhh
Confidence 344467888999998854
No 206
>PF05377 FlaC_arch: Flagella accessory protein C (FlaC); InterPro: IPR008039 Although archaeal flagella appear superficially similar to those of bacteria, they are quite distinct []. In several archaea, the flagellin genes are followed immediately by the flagellar accessory genes flaCDEFGHIJ. The gene products may have a role in translocation, secretion, or assembly of the flagellum. FlaC is a protein whose exact role is unknown but it has been shown to be membrane-associated (by immuno-blotting fractionated cells) [].
Probab=77.87 E-value=12 Score=31.12 Aligned_cols=48 Identities=19% Similarity=0.324 Sum_probs=29.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007579 457 ISELEHKVQTLQTEATTLSAQLTLLQRDSVGLTNQNNELKFRLQAMEQQAQLRDALNEALTA 518 (597)
Q Consensus 457 IeELE~KVq~LQtEN~tLsaQLtlLqre~~~L~aEN~ELK~RLqaLEqQaqLrdALnEaLke 518 (597)
|.+||.++..+.... ..+..||.+|+..++.+++-.+-.=.+.|.+..
T Consensus 2 i~elEn~~~~~~~~i--------------~tvk~en~~i~~~ve~i~envk~ll~lYE~Vs~ 49 (55)
T PF05377_consen 2 IDELENELPRIESSI--------------NTVKKENEEISESVEKIEENVKDLLSLYEVVSN 49 (55)
T ss_pred HHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 456666666554443 334456777777777777666555566666654
No 207
>smart00502 BBC B-Box C-terminal domain. Coiled coil region C-terminal to (some) B-Box domains
Probab=77.85 E-value=43 Score=28.58 Aligned_cols=80 Identities=16% Similarity=0.174 Sum_probs=49.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhc
Q 007579 451 ERKMRYISELEHKVQTLQTEATTLSAQLTLL-QRDSVGLTNQNNELKFRLQAMEQQ-AQLRDALNEALTAEVRRLKVATQ 528 (597)
Q Consensus 451 eRKKqYIeELE~KVq~LQtEN~tLsaQLtlL-qre~~~L~aEN~ELK~RLqaLEqQ-aqLrdALnEaLkeEVqrLK~a~g 528 (597)
.....++..|+..+..++........+|... ..-...|..+...|-.+|...... ........+.|..++..|+.++.
T Consensus 17 ~~~~~~~~~l~~~~~~l~~~~~~~~~~I~~~f~~l~~~L~~~e~~ll~~l~~~~~~~~~~l~~q~~~l~~~l~~l~~~~~ 96 (127)
T smart00502 17 AELEDALKQLISIIQEVEENAADVEAQIKAAFDELRNALNKRKKQLLEDLEEQKENKLKVLEQQLESLTQKQEKLSHAIN 96 (127)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455667777777777777777777777443 333445555666777777665433 44455556666666666666665
Q ss_pred cc
Q 007579 529 EM 530 (597)
Q Consensus 529 Ei 530 (597)
.+
T Consensus 97 ~~ 98 (127)
T smart00502 97 FT 98 (127)
T ss_pred HH
Confidence 43
No 208
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=77.71 E-value=75 Score=31.92 Aligned_cols=39 Identities=15% Similarity=0.168 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007579 461 EHKVQTLQTEATTLSAQLTLLQRDSVGLTNQNNELKFRL 499 (597)
Q Consensus 461 E~KVq~LQtEN~tLsaQLtlLqre~~~L~aEN~ELK~RL 499 (597)
++++..++.+......++..++..+..|..+...+...|
T Consensus 119 ~rkl~~~E~~Le~aEeR~e~~E~ki~eLE~el~~~~~~l 157 (237)
T PF00261_consen 119 ERKLKVLEQELERAEERAEAAESKIKELEEELKSVGNNL 157 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHH
Confidence 333333333333333333333333333333333333333
No 209
>KOG2391 consensus Vacuolar sorting protein/ubiquitin receptor VPS23 [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=77.66 E-value=17 Score=39.66 Aligned_cols=43 Identities=23% Similarity=0.166 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007579 478 LTLLQRDSVGLTNQNNELKFRLQAMEQQAQLRDALNEALTAEV 520 (597)
Q Consensus 478 LtlLqre~~~L~aEN~ELK~RLqaLEqQaqLrdALnEaLkeEV 520 (597)
.+.|.+....|..-.++|+.-+++||+|.+....-.+.|+.-+
T Consensus 234 q~slkRt~EeL~~G~~kL~~~~etLEqq~~~L~~niDIL~~k~ 276 (365)
T KOG2391|consen 234 QESLKRTEEELNIGKQKLVAMKETLEQQLQSLQKNIDILKSKV 276 (365)
T ss_pred HHHHHhhHHHHHhhHHHHHHHHHHHHHHHHHHHhhhHHHHHHH
Confidence 3333344444444455555555555555555555555555443
No 210
>KOG4360 consensus Uncharacterized coiled coil protein [Function unknown]
Probab=77.63 E-value=22 Score=40.70 Aligned_cols=49 Identities=27% Similarity=0.274 Sum_probs=41.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007579 456 YISELEHKVQTLQTEATTLSAQLTLLQRDSVGLTNQNNELKFRLQAMEQ 504 (597)
Q Consensus 456 YIeELE~KVq~LQtEN~tLsaQLtlLqre~~~L~aEN~ELK~RLqaLEq 504 (597)
.|+.+..++..++.||..|-.+|..++++...+..|+.+|...|+++-+
T Consensus 220 el~~kt~el~~q~Ee~skLlsql~d~qkk~k~~~~Ekeel~~~Lq~~~d 268 (596)
T KOG4360|consen 220 ELQSKTKELSRQQEENSKLLSQLVDLQKKIKYLRHEKEELDEHLQAYKD 268 (596)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3455555666788999999999999999999999999999999988754
No 211
>PF08647 BRE1: BRE1 E3 ubiquitin ligase; InterPro: IPR013956 BRE1 is an E3 ubiquitin ligase that has been shown to act as a transcriptional activator through direct activator interactions [].
Probab=77.55 E-value=51 Score=29.20 Aligned_cols=75 Identities=19% Similarity=0.229 Sum_probs=61.1
Q ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHH
Q 007579 436 AKRILANRQSAARSKERKMRYISELEHKVQTLQTEATTLSAQLTLLQRDSVGLTNQNNELKFRLQAM-EQQAQLRD 510 (597)
Q Consensus 436 ~KRILaNRESAaRSReRKKqYIeELE~KVq~LQtEN~tLsaQLtlLqre~~~L~aEN~ELK~RLqaL-EqQaqLrd 510 (597)
+.+|-..++.....=..|..-+..||.++..|..|.+.-..+.-.+.+....|..|++.|+..+..= +-..+|.+
T Consensus 5 L~~~~~a~~~~~~~~~~k~~~~~~lE~k~~rl~~Ek~kadqkyfa~mr~~d~l~~e~k~L~~~~~Ks~~~i~~L~~ 80 (96)
T PF08647_consen 5 LVSMEQAFKELSEQADKKVKELTILEQKKLRLEAEKAKADQKYFAAMRSKDALDNEMKKLNTQLSKSSELIEQLKE 80 (96)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 3556667777777778888889999999999999999999999999999999999999999887433 23344444
No 212
>PF12795 MscS_porin: Mechanosensitive ion channel porin domain
Probab=77.46 E-value=62 Score=32.38 Aligned_cols=60 Identities=22% Similarity=0.267 Sum_probs=29.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007579 461 EHKVQTLQTEATTLSAQLTLLQRDSVGLTNQNNELKFRLQAMEQQAQLRDALNEALTAEV 520 (597)
Q Consensus 461 E~KVq~LQtEN~tLsaQLtlLqre~~~L~aEN~ELK~RLqaLEqQaqLrdALnEaLkeEV 520 (597)
+.+...|++|...|..++..++.+......-..-++.+.+.+..+....+.....|+.-+
T Consensus 149 ~a~~~~l~ae~~~l~~~~~~le~el~s~~~rq~L~~~qrdl~~~~~~~l~~~l~~Lq~~l 208 (240)
T PF12795_consen 149 EAQRWLLQAELAALEAQIEMLEQELLSNNNRQELLQLQRDLLKARIQRLQQQLQALQNLL 208 (240)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555666666666666666665544444444444444444333333333333333333
No 213
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=77.35 E-value=54 Score=32.72 Aligned_cols=17 Identities=29% Similarity=0.466 Sum_probs=10.7
Q ss_pred HHHHHHHHHHHHHHhcc
Q 007579 513 NEALTAEVRRLKVATQE 529 (597)
Q Consensus 513 nEaLkeEVqrLK~a~gE 529 (597)
+..|..||++|...+.|
T Consensus 173 ~~~l~~ei~~L~~klkE 189 (194)
T PF15619_consen 173 VKSLQEEIQRLNQKLKE 189 (194)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 55666777777665543
No 214
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=77.30 E-value=28 Score=41.82 Aligned_cols=64 Identities=19% Similarity=0.125 Sum_probs=41.4
Q ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007579 437 KRILANRQSAARSKERKMRYISELEHKVQTLQTEATTLSAQLTLLQRDSVGLTNQNNELKFRLQ 500 (597)
Q Consensus 437 KRILaNRESAaRSReRKKqYIeELE~KVq~LQtEN~tLsaQLtlLqre~~~L~aEN~ELK~RLq 500 (597)
.....+-+.=.--+.+-.-.++.|..+++.|+.|+..|.+++.....++..|..++.-||.+|.
T Consensus 653 e~l~~~~~kyK~lI~~lD~~~e~lkQ~~~~l~~e~eeL~~~vq~~~s~hsql~~q~~~Lk~qLg 716 (970)
T KOG0946|consen 653 EELDDIQQKYKGLIRELDYQIENLKQMEKELQVENEELEEEVQDFISEHSQLKDQLDLLKNQLG 716 (970)
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3333444444444445555566777777777777777777777777777777777777777665
No 215
>PF02841 GBP_C: Guanylate-binding protein, C-terminal domain; InterPro: IPR003191 Guanylate-binding protein is a GTPase that is induced by interferon (IFN)-gamma. GTPases induced by IFN-gamma are key to the protective immunity against microbial and viral pathogens. These GTPases are classified into three groups: the small 47-kd GTPases, the Mx proteins, and the large 65- to 67-kd GTPases. Guanylate-binding proteins (GBP) fall into the last class. In humans, there are seven GBPs (hGBP1-7) []. Structurally, hGBP1 consists of two domains: a compact globular N-terminal domain harbouring the GTPase function (IPR015894 from INTERPRO), and an alpha-helical finger-like C-terminal domain. Human GBP1 is secreted from cells without the need of a leader peptide, and has been shown to exhibit antiviral activity against Vesicular stomatitis virus and Encephalomyocarditis virus, as well as being able to regulate the inhibition of proliferation and invasion of endothelial cells in response to IFN-gamma [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1DG3_A 2D4H_A 2B8W_B 2B92_A 2BC9_A 1F5N_A.
Probab=77.24 E-value=94 Score=32.14 Aligned_cols=12 Identities=33% Similarity=0.553 Sum_probs=7.1
Q ss_pred HHHHHHHHHHHH
Q 007579 513 NEALTAEVRRLK 524 (597)
Q Consensus 513 nEaLkeEVqrLK 524 (597)
.+.|..||+.|+
T Consensus 286 ~~~l~~ei~~L~ 297 (297)
T PF02841_consen 286 AEKLQKEIQDLQ 297 (297)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHcC
Confidence 555666666654
No 216
>PRK00888 ftsB cell division protein FtsB; Reviewed
Probab=77.10 E-value=8.7 Score=34.71 Aligned_cols=32 Identities=16% Similarity=0.178 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007579 452 RKMRYISELEHKVQTLQTEATTLSAQLTLLQR 483 (597)
Q Consensus 452 RKKqYIeELE~KVq~LQtEN~tLsaQLtlLqr 483 (597)
+.++.+++++.+++.|+.+|..|..++..|+.
T Consensus 31 ~l~~q~~~~~~e~~~l~~~n~~L~~eI~~L~~ 62 (105)
T PRK00888 31 RVNDQVAAQQQTNAKLKARNDQLFAEIDDLKG 62 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 44555666666666666666666666666554
No 217
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family. In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.
Probab=77.07 E-value=14 Score=36.40 Aligned_cols=43 Identities=21% Similarity=0.271 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007579 474 LSAQLTLLQRDSVGLTNQNNELKFRLQAMEQQAQLRDALNEAL 516 (597)
Q Consensus 474 LsaQLtlLqre~~~L~aEN~ELK~RLqaLEqQaqLrdALnEaL 516 (597)
|..+...|+.+...|..+|..|...+..|+++.....--.++|
T Consensus 102 ~~~e~~~l~~e~~~l~~~~e~Le~e~~~L~~~~~~~~eDY~~L 144 (161)
T TIGR02894 102 LQKENERLKNQNESLQKRNEELEKELEKLRQRLSTIEEDYQTL 144 (161)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444444444444433333333333
No 218
>PHA03155 hypothetical protein; Provisional
Probab=77.00 E-value=20 Score=33.76 Aligned_cols=25 Identities=32% Similarity=0.445 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 007579 456 YISELEHKVQTLQTEATTLSAQLTL 480 (597)
Q Consensus 456 YIeELE~KVq~LQtEN~tLsaQLtl 480 (597)
-+|||+.+++.|+.||..|+.+|..
T Consensus 9 tvEeLaaeL~kL~~ENK~LKkkl~~ 33 (115)
T PHA03155 9 DVEELEKELQKLKIENKALKKKLLQ 33 (115)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 3799999999999999999999843
No 219
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=76.83 E-value=63 Score=39.86 Aligned_cols=53 Identities=25% Similarity=0.341 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007579 450 KERKMRYISELEHKV-QTLQTEATTLSAQLTLLQRDSVGLTNQNNELKFRLQAM 502 (597)
Q Consensus 450 ReRKKqYIeELE~KV-q~LQtEN~tLsaQLtlLqre~~~L~aEN~ELK~RLqaL 502 (597)
.++..+.|.+++.+. +.++.+..++..++..|+++...|..+++.|+..++.+
T Consensus 374 ~d~l~k~I~~~~~~~~~~~~~~~~e~e~k~~~L~~evek~e~~~~~L~~e~~~~ 427 (1074)
T KOG0250|consen 374 VDRLEKQIADLEKQTNNELGSELEERENKLEQLKKEVEKLEEQINSLREELNEV 427 (1074)
T ss_pred HHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333334444444444 33333334444444444444444444444444444433
No 220
>PF05103 DivIVA: DivIVA protein; InterPro: IPR007793 The Bacillus subtilis divIVA1 mutation causes misplacement of the septum during cell division, resulting in the formation of small, circular, anucleate minicells []. Inactivation of divIVA produces a minicell phenotype, whereas overproduction of DivIVA results in a filamentation phenotype []. These proteins appear to contain coiled-coils.; PDB: 2WUK_C 2WUJ_A.
Probab=76.68 E-value=1.4 Score=39.13 Aligned_cols=47 Identities=23% Similarity=0.362 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007579 455 RYISELEHKVQTLQTEATTLSAQLTLLQRDSVGLTNQNNELKFRLQA 501 (597)
Q Consensus 455 qYIeELE~KVq~LQtEN~tLsaQLtlLqre~~~L~aEN~ELK~RLqa 501 (597)
.||+.|...+..|..++..|..++..|+.+...+......|+..|..
T Consensus 25 ~fl~~l~~~~~~l~~e~~~L~~~~~~l~~~l~~~~~~~~~l~~~l~~ 71 (131)
T PF05103_consen 25 DFLDELAEELERLQRENAELKEEIEELQAQLEELREEEESLQRALIQ 71 (131)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHCCCCT-----------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHhhhh
Confidence 58999999999999999999999999988888887777777776643
No 221
>KOG2010 consensus Double stranded RNA binding protein [General function prediction only]
Probab=76.22 E-value=10 Score=41.21 Aligned_cols=53 Identities=19% Similarity=0.213 Sum_probs=35.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHH
Q 007579 460 LEHKVQTLQTEATTLSAQLTLLQRDSVGLTNQNNELKFRLQAMEQ-QAQLRDAL 512 (597)
Q Consensus 460 LE~KVq~LQtEN~tLsaQLtlLqre~~~L~aEN~ELK~RLqaLEq-QaqLrdAL 512 (597)
|--+|..|+.+...+.++|++-.++|..+..|-..+|.-+..|.. +.+++++|
T Consensus 145 l~YqVDtLKD~LeE~eeqLaeS~Re~eek~kE~er~Kh~~s~Lq~~~~elKe~l 198 (405)
T KOG2010|consen 145 LIYQVDTLKDVLEEQEEQLAESYRENEEKSKELERQKHMCSVLQHKMEELKEGL 198 (405)
T ss_pred eeeeHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445666777777777777777778777777777777777766642 24444433
No 222
>KOG4571 consensus Activating transcription factor 4 [Transcription]
Probab=76.16 E-value=19 Score=38.43 Aligned_cols=28 Identities=29% Similarity=0.366 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007579 478 LTLLQRDSVGLTNQNNELKFRLQAMEQQ 505 (597)
Q Consensus 478 LtlLqre~~~L~aEN~ELK~RLqaLEqQ 505 (597)
-+.|.-++..|+.+|.+||.+++.||.+
T Consensus 250 ~E~l~ge~~~Le~rN~~LK~qa~~lerE 277 (294)
T KOG4571|consen 250 KEALLGELEGLEKRNEELKDQASELERE 277 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344455556666677777766666544
No 223
>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function.
Probab=75.92 E-value=33 Score=37.59 Aligned_cols=52 Identities=23% Similarity=0.230 Sum_probs=43.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007579 449 SKERKMRYISELEHKVQTLQTEATTLSAQLTLLQRDSVGLTNQNNELKFRLQ 500 (597)
Q Consensus 449 SReRKKqYIeELE~KVq~LQtEN~tLsaQLtlLqre~~~L~aEN~ELK~RLq 500 (597)
-=.|-|..+..||.-+..+..||..|..++..+.+++.+.+.|+.+|...|.
T Consensus 121 vf~k~k~~~q~LE~li~~~~EEn~~lqlqL~~l~~e~~Ekeeesq~LnrELa 172 (401)
T PF06785_consen 121 VFMKTKGDIQHLEGLIRHLREENQCLQLQLDALQQECGEKEEESQTLNRELA 172 (401)
T ss_pred HHHHhcchHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhHhHHHHHHHHHHHH
Confidence 3356677788899999999999999999999999999888888888766653
No 224
>PF15294 Leu_zip: Leucine zipper
Probab=75.91 E-value=8.7 Score=40.53 Aligned_cols=45 Identities=20% Similarity=0.434 Sum_probs=34.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007579 460 LEHKVQTLQTEATTLSAQLTLLQRDSVGLTNQNNELKFRLQAMEQ 504 (597)
Q Consensus 460 LE~KVq~LQtEN~tLsaQLtlLqre~~~L~aEN~ELK~RLqaLEq 504 (597)
|..++..|+.||..|+.++..++.+++....|+..|+.+|..|..
T Consensus 130 l~kEi~rLq~EN~kLk~rl~~le~~at~~l~Ek~kl~~~L~~lq~ 174 (278)
T PF15294_consen 130 LNKEIDRLQEENEKLKERLKSLEKQATSALDEKSKLEAQLKELQD 174 (278)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 666777777888888888888887777777777777777766644
No 225
>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription. The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].
Probab=75.91 E-value=82 Score=30.79 Aligned_cols=27 Identities=15% Similarity=0.276 Sum_probs=12.7
Q ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHH
Q 007579 439 ILANRQSAARSKERKMRYISELEHKVQ 465 (597)
Q Consensus 439 ILaNRESAaRSReRKKqYIeELE~KVq 465 (597)
+++++....+-...-.+.+.+++.++.
T Consensus 49 ~~a~~~~le~~~~~~~~~~~~~~~~A~ 75 (221)
T PF04012_consen 49 VMANQKRLERKLDEAEEEAEKWEKQAE 75 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444444444444444443
No 226
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=75.85 E-value=21 Score=42.75 Aligned_cols=69 Identities=23% Similarity=0.242 Sum_probs=51.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhccc
Q 007579 454 MRYISELEHKVQTLQTEATTLSAQLTLLQRDSVGLTNQNNELKFRLQAME-QQAQLRDALNEALTAEVRRLKVATQEM 530 (597)
Q Consensus 454 KqYIeELE~KVq~LQtEN~tLsaQLtlLqre~~~L~aEN~ELK~RLqaLE-qQaqLrdALnEaLkeEVqrLK~a~gEi 530 (597)
++|.++|-..++.+......|-.+++.+++....|..||.+|+.+++... .+.+ |++++.-||..+|-+
T Consensus 649 ~k~~e~l~~~~~kyK~lI~~lD~~~e~lkQ~~~~l~~e~eeL~~~vq~~~s~hsq--------l~~q~~~Lk~qLg~~ 718 (970)
T KOG0946|consen 649 EKYHEELDDIQQKYKGLIRELDYQIENLKQMEKELQVENEELEEEVQDFISEHSQ--------LKDQLDLLKNQLGII 718 (970)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHhccc
Confidence 57889999999999999999999999999988888889988888876552 2233 334445555555533
No 227
>PF08537 NBP1: Fungal Nap binding protein NBP1; InterPro: IPR013743 NBP1 is a nuclear protein which has been shown in Saccharomyces cerevisiae (Bakers yeast) to be essential for the G2/M transition of the cell cycle.
Probab=75.61 E-value=29 Score=37.47 Aligned_cols=77 Identities=18% Similarity=0.255 Sum_probs=43.2
Q ss_pred hHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007579 433 PKRAKRILANRQSAARSKERKMRYISELEHKVQTLQTE-----------ATTLSAQLTLLQRDSVGLTNQNNELKFRLQA 501 (597)
Q Consensus 433 pKR~KRILaNRESAaRSReRKKqYIeELE~KVq~LQtE-----------N~tLsaQLtlLqre~~~L~aEN~ELK~RLqa 501 (597)
-++.+++|++|...-..=+||...+.-=+..+++|..- .....-+|.+|++++..|..+..+++.+|+.
T Consensus 121 ~~e~r~~lk~RI~rSEAFKRKllE~kYD~~mL~qLr~g~~~~~~~~~~~~~~~~D~v~LLqkk~~~l~~~l~~~~~eL~~ 200 (323)
T PF08537_consen 121 GREERRLLKDRILRSEAFKRKLLEKKYDKRMLEQLRRGRSKNRHNRPRNPSSNSDRVILLQKKIDELEERLNDLEKELEI 200 (323)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhcCCCCCCcccccCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35566899999988777777755443334444444320 0111255666666666555555555555555
Q ss_pred HHHHHHHH
Q 007579 502 MEQQAQLR 509 (597)
Q Consensus 502 LEqQaqLr 509 (597)
+...+.+.
T Consensus 201 ~~k~L~fa 208 (323)
T PF08537_consen 201 TKKDLKFA 208 (323)
T ss_pred HHHHHHHH
Confidence 54444333
No 228
>PF04728 LPP: Lipoprotein leucine-zipper; InterPro: IPR006817 This repeating sequence, NAKVDQLSNDV, is found in the enterobacterial outer membrane lipoprotein LPP. The outer membrane lipoprotein is the most abundant protein in an Escherichia coli cell. The messenger RNA for the lipoprotein of the E. coli outer membrane codes for a putative precursor, prolipoprotein, which has 20 additional amino acid residues extending from the amino terminus of the lipoprotein.; GO: 0019867 outer membrane; PDB: 1JCC_A 2GUV_C 2GUS_A 1JCD_A 1KFM_A 1T8Z_D 1KFN_A 1EQ7_A.
Probab=75.60 E-value=28 Score=29.08 Aligned_cols=45 Identities=27% Similarity=0.368 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007579 456 YISELEHKVQTLQTEATTLSAQLTLLQRDSVGLTNQNNELKFRLQ 500 (597)
Q Consensus 456 YIeELE~KVq~LQtEN~tLsaQLtlLqre~~~L~aEN~ELK~RLq 500 (597)
.|++|...|+.|......|...+..|+.+......|-..-..||.
T Consensus 4 kid~Ls~dVq~L~~kvdqLs~dv~~lr~~v~~ak~EAaRAN~RlD 48 (56)
T PF04728_consen 4 KIDQLSSDVQTLNSKVDQLSSDVNALRADVQAAKEEAARANQRLD 48 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356666666666666666666666665555444444444444443
No 229
>PF13094 CENP-Q: CENP-Q, a CENPA-CAD centromere complex subunit
Probab=75.40 E-value=29 Score=32.65 Aligned_cols=59 Identities=20% Similarity=0.131 Sum_probs=34.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007579 458 SELEHKVQTLQTEATTLSAQLTLLQRDSVGLTNQNNELKFRLQAMEQQAQLRDALNEAL 516 (597)
Q Consensus 458 eELE~KVq~LQtEN~tLsaQLtlLqre~~~L~aEN~ELK~RLqaLEqQaqLrdALnEaL 516 (597)
+.|-.....|+........+|..|+.++...+.....-...|+.|+..++......+..
T Consensus 23 e~ll~~~~~LE~qL~~~~~~l~lLq~e~~~~e~~le~d~~~L~~Le~~~~~~~~e~~~~ 81 (160)
T PF13094_consen 23 EQLLDRKRALERQLAANLHQLELLQEEIEKEEAALERDYEYLQELEKNAKALEREREEE 81 (160)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444455555555566666666666666666666666777766666554444443
No 230
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=75.39 E-value=68 Score=29.60 Aligned_cols=73 Identities=22% Similarity=0.293 Sum_probs=35.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Q 007579 455 RYISELEHKVQTLQTEATTLSAQLTLLQRDSVGLTNQNNELKFRLQAMEQQAQLRDALNEALTAEVRRLKVATQEMA 531 (597)
Q Consensus 455 qYIeELE~KVq~LQtEN~tLsaQLtlLqre~~~L~aEN~ELK~RLqaLEqQaqLrdALnEaLkeEVqrLK~a~gEi~ 531 (597)
.|-.+|..-... -.+...|+.++..++.+...|..+....+..|...+ ..+...-..|..|+..++.-+.++.
T Consensus 46 ~YE~El~~Ha~~-~~~L~~lr~e~~~~~~~~~~l~~~~~~a~~~l~~~e---~sw~~qk~~le~e~~~~~~r~~dL~ 118 (132)
T PF07926_consen 46 KYERELVKHAED-IKELQQLREELQELQQEINELKAEAESAKAELEESE---ASWEEQKEQLEKELSELEQRIEDLN 118 (132)
T ss_pred HHHHHHHHhHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444433333 233444444555554444444444444444443332 2233445566677777776666654
No 231
>PRK14127 cell division protein GpsB; Provisional
Probab=75.15 E-value=19 Score=33.33 Aligned_cols=28 Identities=14% Similarity=0.310 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007579 456 YISELEHKVQTLQTEATTLSAQLTLLQR 483 (597)
Q Consensus 456 YIeELE~KVq~LQtEN~tLsaQLtlLqr 483 (597)
|++++...++.|..|+..|..++..|+.
T Consensus 31 FLd~V~~dye~l~~e~~~Lk~e~~~l~~ 58 (109)
T PRK14127 31 FLDDVIKDYEAFQKEIEELQQENARLKA 58 (109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444444444444444444433
No 232
>PRK00106 hypothetical protein; Provisional
Probab=75.03 E-value=87 Score=35.93 Aligned_cols=27 Identities=19% Similarity=0.230 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007579 444 QSAARSKERKMRYISELEHKVQTLQTE 470 (597)
Q Consensus 444 ESAaRSReRKKqYIeELE~KVq~LQtE 470 (597)
++....+..++++..+.+.++.....+
T Consensus 61 eA~~EAke~~ke~~lEaeeEi~~~R~E 87 (535)
T PRK00106 61 TAKRESKALKKELLLEAKEEARKYREE 87 (535)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444455555555555554444433
No 233
>KOG1853 consensus LIS1-interacting protein NUDE [Cytoskeleton]
Probab=75.03 E-value=90 Score=33.41 Aligned_cols=94 Identities=19% Similarity=0.249 Sum_probs=50.2
Q ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHH
Q 007579 437 KRILANRQSAARSKERKMRYISELEHKVQTLQTEATTLSAQLTLLQRDSVGLTN----QNNELKFRLQAMEQQAQLRDAL 512 (597)
Q Consensus 437 KRILaNRESAaRSReRKKqYIeELE~KVq~LQtEN~tLsaQLtlLqre~~~L~a----EN~ELK~RLqaLEqQaqLrdAL 512 (597)
.+.+.-|+--..-.+--.+|-.+||.++.+|++.|..|..++..|.-+...+.. +-.+.-.++..|+..+--..++
T Consensus 27 q~f~~~reEl~EFQegSrE~EaelesqL~q~etrnrdl~t~nqrl~~E~e~~Kek~e~q~~q~y~q~s~Leddlsqt~ai 106 (333)
T KOG1853|consen 27 QHFLQMREELNEFQEGSREIEAELESQLDQLETRNRDLETRNQRLTTEQERNKEKQEDQRVQFYQQESQLEDDLSQTHAI 106 (333)
T ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555666666666666777778888877777777776665544433322222 1122222333444443333355
Q ss_pred HHHHHHHHHHHHHHhccc
Q 007579 513 NEALTAEVRRLKVATQEM 530 (597)
Q Consensus 513 nEaLkeEVqrLK~a~gEi 530 (597)
-|-|++-|..|.++-..+
T Consensus 107 keql~kyiReLEQaNDdL 124 (333)
T KOG1853|consen 107 KEQLRKYIRELEQANDDL 124 (333)
T ss_pred HHHHHHHHHHHHHhccHH
Confidence 555655555555554443
No 234
>PF14915 CCDC144C: CCDC144C protein coiled-coil region
Probab=74.86 E-value=91 Score=33.67 Aligned_cols=59 Identities=22% Similarity=0.224 Sum_probs=31.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007579 444 QSAARSKERKMRYISELEHKVQTLQTEATTLSAQLTLLQRDSVGLTNQNNELKFRLQAM 502 (597)
Q Consensus 444 ESAaRSReRKKqYIeELE~KVq~LQtEN~tLsaQLtlLqre~~~L~aEN~ELK~RLqaL 502 (597)
++++|-....+..+.|+|...+.-+........+-..++.....|..||--|+++|...
T Consensus 182 E~~QrdL~Qtq~q~KE~e~m~qne~~kv~k~~~Kqes~eERL~QlqsEN~LLrQQLddA 240 (305)
T PF14915_consen 182 ESVQRDLSQTQCQIKEIEHMYQNEQDKVNKYIGKQESLEERLSQLQSENMLLRQQLDDA 240 (305)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555555555555555555555555555555555555555555555555555555443
No 235
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=74.85 E-value=49 Score=39.40 Aligned_cols=63 Identities=22% Similarity=0.301 Sum_probs=35.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 007579 465 QTLQTEATTLSAQLTLLQRDSVGLTNQNNELKFRLQAMEQQAQLRDALNEALTAEVRRLKVAT 527 (597)
Q Consensus 465 q~LQtEN~tLsaQLtlLqre~~~L~aEN~ELK~RLqaLEqQaqLrdALnEaLkeEVqrLK~a~ 527 (597)
..+...+..|+..+...+..+..|.+++..|+.+|..-..++--+.+.++.+.+|..++..-+
T Consensus 318 ~d~r~hi~~lkesl~~ke~~~~~Lqsdve~Lr~rle~k~~~l~kk~~~~~~~qeE~~~~~~Ei 380 (775)
T PF10174_consen 318 SDMRQHIEVLKESLRAKEQEAEMLQSDVEALRFRLEEKNSQLEKKQAQIEKLQEEKSRLQGEI 380 (775)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444555555555666667777777777776665555555555555555555544433
No 236
>KOG0999 consensus Microtubule-associated protein Bicaudal-D [Intracellular trafficking, secretion, and vesicular transport]
Probab=74.72 E-value=23 Score=41.05 Aligned_cols=75 Identities=20% Similarity=0.209 Sum_probs=51.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCC
Q 007579 460 LEHKVQTLQTEATTLSAQLTLLQRDSVGLTNQNNELKFRLQAMEQQAQLRDALNEALTAEVRRLKVATQEMASES 534 (597)
Q Consensus 460 LE~KVq~LQtEN~tLsaQLtlLqre~~~L~aEN~ELK~RLqaLEqQaqLrdALnEaLkeEVqrLK~a~gEi~~~~ 534 (597)
.|..|+.|++|+..|..+++...++...-...==+|-..-..|++++.-.++..+.++.|+..++.++|+.-..+
T Consensus 6 aeq~ve~lr~eierLT~el~q~t~e~~qaAeyGL~lLeeK~~Lkqq~eEleaeyd~~R~Eldqtkeal~q~~s~h 80 (772)
T KOG0999|consen 6 AEQEVEKLRQEIERLTEELEQTTEEKIQAAEYGLELLEEKEDLKQQLEELEAEYDLARTELDQTKEALGQYRSQH 80 (772)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 466777888888888888777766655444433333444445555555567888899999999999999875543
No 237
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=74.70 E-value=22 Score=40.96 Aligned_cols=46 Identities=26% Similarity=0.395 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007579 455 RYISELEHKVQTLQTEATTLSAQLTLLQRDSVGLTNQNNELKFRLQ 500 (597)
Q Consensus 455 qYIeELE~KVq~LQtEN~tLsaQLtlLqre~~~L~aEN~ELK~RLq 500 (597)
+.|++|+.++..++.+...|...+..+..+......++.+|...+.
T Consensus 335 ~~l~~l~~~i~~~~~~~~~l~~~~~q~~~e~~~~~~~~~~le~~~~ 380 (594)
T PF05667_consen 335 EQLDELESQIEELEAEIKMLKSSLKQLEEELEEKEAENEELEEELK 380 (594)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456666666666666666666666666666666665555555444
No 238
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=74.65 E-value=52 Score=33.79 Aligned_cols=60 Identities=17% Similarity=0.216 Sum_probs=32.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHH
Q 007579 458 SELEHKVQTLQTEATTLSAQLTLLQRDSVGLTNQNNELKFRLQAMEQQ-AQLRDALNEALT 517 (597)
Q Consensus 458 eELE~KVq~LQtEN~tLsaQLtlLqre~~~L~aEN~ELK~RLqaLEqQ-aqLrdALnEaLk 517 (597)
++|..+-..+..|...+.+-+..|+.....+..|.+..+..+..+..+ ..+++.+++.++
T Consensus 42 ~~L~~Er~~h~eeLrqI~~DIn~lE~iIkqa~~er~~~~~~i~r~~eey~~Lk~~in~~R~ 102 (230)
T PF10146_consen 42 EELLQERMAHVEELRQINQDINTLENIIKQAESERNKRQEKIQRLYEEYKPLKDEINELRK 102 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444445555555555555555555556666666666555555433 445555555543
No 239
>PF10205 KLRAQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019343 This entry represents a N-terminal 100 residues long domain, which contains a conserved KLRAQ motif. This domain is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain a C-terminal TTKRSYEDQ motif domain (IPR019348 from INTERPRO). The function of these proteins is not known.
Probab=74.64 E-value=46 Score=30.73 Aligned_cols=66 Identities=21% Similarity=0.204 Sum_probs=33.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 007579 463 KVQTLQTEATTLSAQLTLLQRDSVGLTNQNNELKFRLQAMEQQAQLRDALNEALTAEVRRLKVATQ 528 (597)
Q Consensus 463 KVq~LQtEN~tLsaQLtlLqre~~~L~aEN~ELK~RLqaLEqQaqLrdALnEaLkeEVqrLK~a~g 528 (597)
+...|.+.|..|+.-|-.-+..+..|..+.+.-...|-.++++......-|..|.+.|+.|...+.
T Consensus 6 eYsKLraQ~~vLKKaVieEQ~k~~~L~e~Lk~ke~~LRk~eqE~dSL~FrN~QL~kRV~~LQ~El~ 71 (102)
T PF10205_consen 6 EYSKLRAQNQVLKKAVIEEQAKNAELKEQLKEKEQALRKLEQENDSLTFRNQQLTKRVEVLQEELE 71 (102)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444444444444444444444455555555555556666666666655554
No 240
>KOG2264 consensus Exostosin EXT1L [Signal transduction mechanisms]
Probab=74.64 E-value=21 Score=41.46 Aligned_cols=49 Identities=22% Similarity=0.190 Sum_probs=36.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007579 454 MRYISELEHKVQTLQTEATTLSAQLTLLQRDSVGLTNQNNELKFRLQAM 502 (597)
Q Consensus 454 KqYIeELE~KVq~LQtEN~tLsaQLtlLqre~~~L~aEN~ELK~RLqaL 502 (597)
...+-|||.|-|.|+.|+.++..++++|++....-..|...||..++..
T Consensus 92 s~EL~ele~krqel~seI~~~n~kiEelk~~i~~~q~eL~~Lk~~ieqa 140 (907)
T KOG2264|consen 92 SLELTELEVKRQELNSEIEEINTKIEELKRLIPQKQLELSALKGEIEQA 140 (907)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhHHHHHHHHhHHHHH
Confidence 3457788999999999999998888888887666666666666555443
No 241
>PF15397 DUF4618: Domain of unknown function (DUF4618)
Probab=74.52 E-value=99 Score=32.58 Aligned_cols=67 Identities=28% Similarity=0.269 Sum_probs=33.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHH
Q 007579 459 ELEHKVQTLQTEATTLSAQLTLLQRDSVGLTN-----------QNNELKFRLQAME-QQAQLRDALNEALTAEVRRLKV 525 (597)
Q Consensus 459 ELE~KVq~LQtEN~tLsaQLtlLqre~~~L~a-----------EN~ELK~RLqaLE-qQaqLrdALnEaLkeEVqrLK~ 525 (597)
..|.++..|+.+...|.++|...+.+..-|.+ +..+|..+|+.+. .|..-.+.+++..+.|...|-.
T Consensus 78 k~e~~l~~Lq~ql~~l~akI~k~~~el~~L~TYkD~EYPvK~vqIa~L~rqlq~lk~~qqdEldel~e~~~~el~~l~~ 156 (258)
T PF15397_consen 78 KEESKLSKLQQQLEQLDAKIQKTQEELNFLSTYKDHEYPVKAVQIANLVRQLQQLKDSQQDELDELNEMRQMELASLSR 156 (258)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444444444443 4455555565553 3344455666666655544433
No 242
>COG4372 Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown]
Probab=74.46 E-value=1.3e+02 Score=34.04 Aligned_cols=84 Identities=30% Similarity=0.318 Sum_probs=40.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHH-
Q 007579 446 AARSKERKMRYISELEHKVQTLQTEATTLSAQLTLLQRDSVGLT--------------NQNNELKFRLQAMEQQAQLRD- 510 (597)
Q Consensus 446 AaRSReRKKqYIeELE~KVq~LQtEN~tLsaQLtlLqre~~~L~--------------aEN~ELK~RLqaLEqQaqLrd- 510 (597)
|++-..+-++.+..|....+.|+++..+|.++-..|+.+...|. .+-.+|+.+-..+|++.+...
T Consensus 128 a~~n~~kAqQ~lar~t~Q~q~lqtrl~~l~~qr~ql~aq~qsl~a~~k~LQ~s~~Qlk~~~~~L~~r~~~ieQ~~~~la~ 207 (499)
T COG4372 128 ARQNLAKAQQELARLTKQAQDLQTRLKTLAEQRRQLEAQAQSLQASQKQLQASATQLKSQVLDLKLRSAQIEQEAQNLAT 207 (499)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333344444444444555555555554444444444443333 444444445455555533322
Q ss_pred --HHHHHHHHHHHHHHHHhcc
Q 007579 511 --ALNEALTAEVRRLKVATQE 529 (597)
Q Consensus 511 --ALnEaLkeEVqrLK~a~gE 529 (597)
.-.+.+.+|+.++..+..+
T Consensus 208 r~~a~q~r~~ela~r~aa~Qq 228 (499)
T COG4372 208 RANAAQARTEELARRAAAAQQ 228 (499)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 2345666777777666554
No 243
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=74.37 E-value=54 Score=36.85 Aligned_cols=40 Identities=20% Similarity=0.276 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007579 459 ELEHKVQTLQTEATTLSAQLTLLQRDSVGLTNQNNELKFR 498 (597)
Q Consensus 459 ELE~KVq~LQtEN~tLsaQLtlLqre~~~L~aEN~ELK~R 498 (597)
+|-.+.-.|..|...+.+++.+.+.++..|..||..|..+
T Consensus 31 ~~~aq~~~~~a~~~ai~a~~~~~E~~l~~Lq~e~~~l~e~ 70 (459)
T KOG0288|consen 31 RLSAQLVILRAESRAIKAKLQEKELELNRLQEENTQLNEE 70 (459)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444444444555555555555555555555555443
No 244
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=74.30 E-value=40 Score=39.80 Aligned_cols=10 Identities=40% Similarity=0.444 Sum_probs=5.3
Q ss_pred CCCcccccCC
Q 007579 109 GPTHSRSLSQ 118 (597)
Q Consensus 109 ~~~hsrslsq 118 (597)
|..|-+|.+-
T Consensus 210 g~v~~~s~sg 219 (782)
T PRK00409 210 GIVHDQSSSG 219 (782)
T ss_pred CceeeEECCC
Confidence 4455555554
No 245
>PF05769 DUF837: Protein of unknown function (DUF837); InterPro: IPR008555 This family consists of several eukaryotic proteins of unknown function. One of the family members (O02197 from SWISSPROT) is a circulating cathodic antigen (CCA) found in Schistosoma mansoni (Blood fluke) [].
Probab=74.28 E-value=92 Score=30.85 Aligned_cols=68 Identities=22% Similarity=0.182 Sum_probs=41.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHhccc
Q 007579 462 HKVQTLQTEATTLSAQLTLLQRDSVGLTNQNNELKFRLQAMEQQAQLRDA---LNEALTAEVRRLKVATQEM 530 (597)
Q Consensus 462 ~KVq~LQtEN~tLsaQLtlLqre~~~L~aEN~ELK~RLqaLEqQaqLrdA---LnEaLkeEVqrLK~a~gEi 530 (597)
.++..|+.||.+|+.-+.+.+.....+++.-++--.++.... +....+. .++.+.++|+.....+.|+
T Consensus 70 ~qi~~Lq~EN~eL~~~leEhq~alelIM~KyReq~~~l~~~~-k~~~~~~~~~~~~~~~~~~~~~~~kI~EM 140 (181)
T PF05769_consen 70 RQIRQLQQENRELRQSLEEHQSALELIMSKYREQMSQLMMAS-KFDDTEPYLEANEQLSKEVQSQAEKICEM 140 (181)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-hhhhhhHHHHHHHHHHHHHhhHHHHHHHH
Confidence 456788899999999988888888888777765544443221 1122222 3345556666555555443
No 246
>PF04871 Uso1_p115_C: Uso1 / p115 like vesicle tethering protein, C terminal region; InterPro: IPR006955 This domain identifies a group of proteins, which are described as: General vesicular transport factor, Transcytosis associate protein (TAP) and Vesicle docking protein. This myosin-shaped molecule consists of an N-terminal globular head region, a coiled-coil tail which mediates dimerisation, and a short C-terminal acidic region []. p115 tethers COP1 vesicles to the Golgi by binding the coiled coil proteins giantin (on the vesicles) and GM130 (on the Golgi), via its C-terminal acidic region. It is required for intercisternal transport in the Golgi stack. This domain is found in the acidic C-terminal region, which binds to the golgins giantin and GM130. p115 is thought to juxtapose two membranes by binding giantin with one acidic region, and GM130 with another [].; GO: 0008565 protein transporter activity, 0006886 intracellular protein transport, 0005737 cytoplasm, 0016020 membrane
Probab=74.23 E-value=42 Score=31.68 Aligned_cols=26 Identities=27% Similarity=0.231 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHhccccC
Q 007579 507 QLRDALNEALTAEVRRLKVATQEMAS 532 (597)
Q Consensus 507 qLrdALnEaLkeEVqrLK~a~gEi~~ 532 (597)
.+..-+-+.+++--.|||..-.+|++
T Consensus 91 ~ll~Dle~K~~kyk~rLk~LG~eVSd 116 (136)
T PF04871_consen 91 VLLGDLEEKRKKYKERLKELGEEVSD 116 (136)
T ss_pred HHHHhHHHHHHHHHHHHHHcCCCccC
Confidence 33333444444445666665555544
No 247
>PF05700 BCAS2: Breast carcinoma amplified sequence 2 (BCAS2); InterPro: IPR008409 This family consists of several eukaryotic sequences of unknown function. The mammalian members of this family are annotated as breast carcinoma amplified sequence 2 (BCAS2) proteins []. BCAS2 is a putative spliceosome associated protein [].
Probab=74.23 E-value=14 Score=36.85 Aligned_cols=31 Identities=23% Similarity=0.349 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007579 475 SAQLTLLQRDSVGLTNQNNELKFRLQAMEQQ 505 (597)
Q Consensus 475 saQLtlLqre~~~L~aEN~ELK~RLqaLEqQ 505 (597)
..+|..|+++...+...|-+|..-+..|+++
T Consensus 174 ~~~L~~Le~~W~~~v~kn~eie~a~~~Le~e 204 (221)
T PF05700_consen 174 GEELRYLEQRWKELVSKNLEIEVACEELEQE 204 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555555555555555555555443
No 248
>smart00338 BRLZ basic region leucin zipper.
Probab=74.20 E-value=21 Score=28.95 Aligned_cols=27 Identities=22% Similarity=0.374 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007579 478 LTLLQRDSVGLTNQNNELKFRLQAMEQ 504 (597)
Q Consensus 478 LtlLqre~~~L~aEN~ELK~RLqaLEq 504 (597)
+..|+.+...|..+|.+|+.++..|+.
T Consensus 28 ~~~Le~~~~~L~~en~~L~~~~~~l~~ 54 (65)
T smart00338 28 IEELERKVEQLEAENERLKKEIERLRR 54 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444555555555555544433
No 249
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=74.18 E-value=63 Score=39.99 Aligned_cols=33 Identities=18% Similarity=0.252 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007579 459 ELEHKVQTLQTEATTLSAQLTLLQRDSVGLTNQ 491 (597)
Q Consensus 459 ELE~KVq~LQtEN~tLsaQLtlLqre~~~L~aE 491 (597)
+||.++..|..++..|...+..+..+...|..+
T Consensus 885 ~le~~L~el~~el~~l~~~~~~~~~~~~~~~~~ 917 (1311)
T TIGR00606 885 QFEEQLVELSTEVQSLIREIKDAKEQDSPLETF 917 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHH
Confidence 333333333333333333333333333333333
No 250
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=74.10 E-value=43 Score=39.50 Aligned_cols=11 Identities=36% Similarity=0.335 Sum_probs=6.8
Q ss_pred CCCCcccccCC
Q 007579 108 PGPTHSRSLSQ 118 (597)
Q Consensus 108 ~~~~hsrslsq 118 (597)
+|..|.+|.|-
T Consensus 204 ~g~v~~~S~sg 214 (771)
T TIGR01069 204 KGIVHDTSSSG 214 (771)
T ss_pred CCeEEEEeCCC
Confidence 45566666665
No 251
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=74.09 E-value=47 Score=34.80 Aligned_cols=53 Identities=13% Similarity=0.173 Sum_probs=27.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCCCCCcCccccccCCCchhhhhhcc
Q 007579 492 NNELKFRLQAMEQQAQLRDALNEALTAEVRRLKVATQEMASESDPSKGMANQQLPMNSQMFQVHQQ 557 (597)
Q Consensus 492 N~ELK~RLqaLEqQaqLrdALnEaLkeEVqrLK~a~gEi~~~~~~~~~~~~~~~~~~~~~fq~~~~ 557 (597)
+++++..+..|.-+. +-.||.|++|+-.-...+|. +...-++|+.+-||+.|-
T Consensus 201 ~~ear~~i~rl~~~i---~ernEkmKee~m~kLKdlGN----------~iL~pFGlStdnFqmvqd 253 (271)
T KOG4234|consen 201 RREAREAIARLPPKI---NERNEKMKEEMMEKLKDLGN----------FILSPFGLSTDNFQMVQD 253 (271)
T ss_pred hHHHHHHHHhcCHHH---HHHHHHHHHHHHHHHHHhhh----------hhcccccccccceeeeeC
Confidence 344444444443322 23478888887433333332 222346677888888654
No 252
>PF09325 Vps5: Vps5 C terminal like; InterPro: IPR015404 Vps5 is a sorting nexin that functions in membrane trafficking. This is the C-terminal dimerisation domain [].
Probab=73.98 E-value=60 Score=31.37 Aligned_cols=88 Identities=16% Similarity=0.215 Sum_probs=49.1
Q ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007579 437 KRILANRQSAARSKERKMRYISELEHKVQTLQTEATTLSAQLTLLQRDSVGLTNQNNELKFRLQAMEQQAQLRDALNEAL 516 (597)
Q Consensus 437 KRILaNRESAaRSReRKKqYIeELE~KVq~LQtEN~tLsaQLtlLqre~~~L~aEN~ELK~RLqaLEqQaqLrdALnEaL 516 (597)
-|++.-=..+-.-|.++..+++.++..++..+.+...|...-..-......+..+..+++.++..++.+ .+.+.+.+
T Consensus 117 ~~~~~svk~~l~~R~~~~~~~~~a~~~l~kkk~~~~kl~~~~~~~~~k~~~~~~ei~~~~~~~~~~~~~---~~~is~~~ 193 (236)
T PF09325_consen 117 LRYIESVKEALNRRDKKLIEYQNAEKELQKKKAQLEKLKASGKNRQDKVEQAENEIEEAERRVEQAKDE---FEEISENI 193 (236)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHH
Confidence 444444444555566666777777777766666666655542222334444555555555555554433 23446667
Q ss_pred HHHHHHHHHHh
Q 007579 517 TAEVRRLKVAT 527 (597)
Q Consensus 517 keEVqrLK~a~ 527 (597)
+.|++|....-
T Consensus 194 k~E~~rf~~~k 204 (236)
T PF09325_consen 194 KKELERFEKEK 204 (236)
T ss_pred HHHHHHHHHHH
Confidence 77887766543
No 253
>PF09744 Jnk-SapK_ap_N: JNK_SAPK-associated protein-1; InterPro: IPR019143 This entry represents the N-terminal 200 residues of a set of proteins conserved from yeasts to humans. Most of the proteins in this entry have a RhoGEF domain (IPR000219 from INTERPRO) at their C-terminal end.
Probab=73.85 E-value=71 Score=31.17 Aligned_cols=37 Identities=19% Similarity=0.199 Sum_probs=18.4
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007579 435 RAKRILANRQSAARSKERKMRYISELEHKVQTLQTEA 471 (597)
Q Consensus 435 R~KRILaNRESAaRSReRKKqYIeELE~KVq~LQtEN 471 (597)
++-|+|-+=++++-....-..-++.|......|..+.
T Consensus 30 ~VV~vLE~Le~~~~~n~~~~~e~~~L~~d~e~L~~q~ 66 (158)
T PF09744_consen 30 KVVRVLELLESLASRNQEHEVELELLREDNEQLETQY 66 (158)
T ss_pred HHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHH
Confidence 3445555556655554444444445554444444433
No 254
>PF14932 HAUS-augmin3: HAUS augmin-like complex subunit 3
Probab=73.84 E-value=56 Score=33.42 Aligned_cols=43 Identities=21% Similarity=0.189 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007579 455 RYISELEHKVQTLQTEATTLSAQLTLLQRDSVGLTNQNNELKF 497 (597)
Q Consensus 455 qYIeELE~KVq~LQtEN~tLsaQLtlLqre~~~L~aEN~ELK~ 497 (597)
..++.||.+++.|+........++..++.....+..+...|..
T Consensus 68 ~~le~Le~el~~l~~~~~~~~~~~~~lq~~~~~~~~~~~~l~~ 110 (256)
T PF14932_consen 68 EDLEALEEELEALQEYKELYEQLRNKLQQLDSSLSQELSELEG 110 (256)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 5566666666666665555555555555544444444444444
No 255
>PF13166 AAA_13: AAA domain
Probab=73.73 E-value=70 Score=36.19 Aligned_cols=68 Identities=16% Similarity=0.341 Sum_probs=37.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007579 456 YISELEHKVQTLQTEATTLSAQLTLLQRDSVGLTNQNNELKFRLQAMEQQAQLRDALNEALTAEVRRL 523 (597)
Q Consensus 456 YIeELE~KVq~LQtEN~tLsaQLtlLqre~~~L~aEN~ELK~RLqaLEqQaqLrdALnEaLkeEVqrL 523 (597)
++.+++..+..++.+...+...+..++.....+..+...++.++..|+.+..-.+...+.+.+++..|
T Consensus 404 ~~~~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~iN~~L~~~ 471 (712)
T PF13166_consen 404 LIAKLKEDIEEYQKEIKELEKEINSLEKKLKKAKEEIKKIEKEIKELEAQLKNTEPAADRINEELKRL 471 (712)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHh
Confidence 34444455555555555566666666666666666666666666666555443334444444444444
No 256
>PF12709 Kinetocho_Slk19: Central kinetochore-associated; InterPro: IPR024312 This is a family of proteins integrally involved in the central kinetochore. Slk19 is a yeast member and it may play an important role in the timing of nuclear migration. It may also participate, directly or indirectly, in the maintenance of centromeric tensile strength during mitotic stagnation, for instance during activation of checkpoint controls, when cells need to preserve nuclear integrity until cell cycle progression can be resumed [].
Probab=73.64 E-value=15 Score=33.08 Aligned_cols=48 Identities=25% Similarity=0.362 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007579 455 RYISELEHKVQTLQTEA-TTLSAQLTLLQRDSVGLTNQNNELKFRLQAM 502 (597)
Q Consensus 455 qYIeELE~KVq~LQtEN-~tLsaQLtlLqre~~~L~aEN~ELK~RLqaL 502 (597)
+|-..=|.||..|..-- +....+|..|+.++..|..||..|+.+|...
T Consensus 27 ~YssKHE~KV~~LKksYe~rwek~v~~L~~e~~~l~~E~e~L~~~l~~e 75 (87)
T PF12709_consen 27 LYSSKHETKVKALKKSYEARWEKKVDELENENKALKRENEQLKKKLDTE 75 (87)
T ss_pred HHhhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444455555554222 2244455555555555555555555555444
No 257
>KOG3433 consensus Protein involved in meiotic recombination/predicted coiled-coil protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=73.55 E-value=32 Score=34.95 Aligned_cols=54 Identities=17% Similarity=0.238 Sum_probs=35.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007579 451 ERKMRYISELEHKVQTLQTEATTLSAQLTLLQRDSVGLTNQNNELKFRLQAMEQ 504 (597)
Q Consensus 451 eRKKqYIeELE~KVq~LQtEN~tLsaQLtlLqre~~~L~aEN~ELK~RLqaLEq 504 (597)
..++-|+.+||..++.......+|...+.........-+..+.+|+..+..|..
T Consensus 77 ~~~ks~~qeLe~~L~~~~qk~~tl~e~~en~K~~~e~tEer~~el~kklnslkk 130 (203)
T KOG3433|consen 77 CDRKSVLQELESQLATGSQKKATLGESIENRKAGREETEERTDELTKKLNSLKK 130 (203)
T ss_pred HHHHHHHHHHHHHHHHhhhhHhHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHH
Confidence 345567778888887777777777777766666555555555566666555533
No 258
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=73.47 E-value=63 Score=42.16 Aligned_cols=47 Identities=23% Similarity=0.213 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007579 449 SKERKMRYISELEHKVQTLQTEATTLSAQLTLLQRDSVGLTNQNNEL 495 (597)
Q Consensus 449 SReRKKqYIeELE~KVq~LQtEN~tLsaQLtlLqre~~~L~aEN~EL 495 (597)
-+.|...-..+||.+++.++.+......+...|+.+...+..+..+|
T Consensus 895 ~~~~~~~~k~~le~~l~~~~~~~e~~ee~~~~le~~~~~~~~e~~~l 941 (1930)
T KOG0161|consen 895 LLERLRAEKQELEKELKELKERLEEEEEKNAELERKKRKLEQEVQEL 941 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333444444444444433333333333333333333333333
No 259
>PF09738 DUF2051: Double stranded RNA binding protein (DUF2051); InterPro: IPR019139 This entry represents transcriptional repressors which preferentially bind to the GC-rich consensus sequence (5'-AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA. They may control smooth muscle cell proliferation following artery injury through PDGFA repression and may also bind double-stranded RNA. They interact with the leucine-rich repeat domain of human flightless-I (FliI) protein.
Probab=73.46 E-value=43 Score=35.68 Aligned_cols=9 Identities=11% Similarity=0.154 Sum_probs=4.2
Q ss_pred Cchhhhhhc
Q 007579 548 NSQMFQVHQ 556 (597)
Q Consensus 548 ~~~~fq~~~ 556 (597)
++.-.|+..
T Consensus 202 s~e~a~~L~ 210 (302)
T PF09738_consen 202 SQEAAQLLE 210 (302)
T ss_pred chhhhhhhc
Confidence 344455543
No 260
>PHA03011 hypothetical protein; Provisional
Probab=73.46 E-value=25 Score=32.80 Aligned_cols=56 Identities=21% Similarity=0.165 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 007579 474 LSAQLTLLQRDSVGLTNQNNELKFRLQAMEQQAQLRDALNEALTAEVRRLKVATQE 529 (597)
Q Consensus 474 LsaQLtlLqre~~~L~aEN~ELK~RLqaLEqQaqLrdALnEaLkeEVqrLK~a~gE 529 (597)
+..++..|..++.+|..|-+.+.-.+..+++-.|-.+...-.|++|+.+||..+..
T Consensus 62 i~e~ldeL~~qYN~L~dEYn~i~Ne~k~~~~iIQdn~d~I~~LraeIDkLK~niaN 117 (120)
T PHA03011 62 IIEILDELIAQYNELLDEYNLIENEIKDLEIIIQDNDDEIHFLRAEIDKLKENIAN 117 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHhc
Confidence 33333444444444444444343334444433344445555677888888876653
No 261
>PRK12705 hypothetical protein; Provisional
Probab=73.39 E-value=62 Score=36.83 Aligned_cols=34 Identities=24% Similarity=0.240 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007579 474 LSAQLTLLQRDSVGLTNQNNELKFRLQAMEQQAQ 507 (597)
Q Consensus 474 LsaQLtlLqre~~~L~aEN~ELK~RLqaLEqQaq 507 (597)
|..+-..|.+....|.....+|..+-+.|+.+..
T Consensus 86 l~~~e~~l~~~~~~l~~~~~~l~~~~~~l~~~~~ 119 (508)
T PRK12705 86 LVQKEEQLDARAEKLDNLENQLEEREKALSAREL 119 (508)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444555555555555555555555544433
No 262
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=73.36 E-value=39 Score=38.23 Aligned_cols=48 Identities=19% Similarity=0.292 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007579 454 MRYISELEHKVQTLQTEATTLSAQLTLLQRDSVGLTNQNNELKFRLQA 501 (597)
Q Consensus 454 KqYIeELE~KVq~LQtEN~tLsaQLtlLqre~~~L~aEN~ELK~RLqa 501 (597)
++|.+++-.++..|+.+...+.+....+++..+.+.+.-+.+..++..
T Consensus 353 k~~~e~~~~e~~~l~~~~~~~e~~kk~~e~k~~q~q~k~~k~~kel~~ 400 (493)
T KOG0804|consen 353 KQYYELLITEADSLKQESSDLEAEKKIVERKLQQLQTKLKKCQKELKE 400 (493)
T ss_pred HHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455566555565555555555555555555444444444444444433
No 263
>cd07627 BAR_Vps5p The Bin/Amphiphysin/Rvs (BAR) domain of yeast Sorting Nexin Vps5p. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. Vsp5p is the yeast counterpart of human SNX1 and is part of the retromer complex, which functions in the endosome-to-Golgi retrieval of vacuolar protein sorting receptor Vps10p, the Golgi-resident membrane protein A-ALP, and endopeptidase Kex2. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in
Probab=73.29 E-value=80 Score=31.25 Aligned_cols=78 Identities=17% Similarity=0.287 Sum_probs=0.0
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007579 438 RILANRQSAARSKERKMRYISELEHKVQTLQTEATTL-------SAQLTLLQRDSVGLTNQNNELKFRLQAMEQQAQLRD 510 (597)
Q Consensus 438 RILaNRESAaRSReRKKqYIeELE~KVq~LQtEN~tL-------saQLtlLqre~~~L~aEN~ELK~RLqaLEqQaqLrd 510 (597)
|++.==..+-.-|.++..|++.++..+..+......| ..++..++.+...+...-.+.+.+.+.+
T Consensus 98 r~~~Svk~~~~~R~~~~~~~~~~~~~L~k~~~~~~Kl~~~~~s~~~K~~~~~~ei~~~e~~~~~a~~~~e~i-------- 169 (216)
T cd07627 98 RSIGSVRAAFAQRQKLWQYWQSAESELSKKKAQLEKLKRQGKTQQEKLNSLLSELEEAERRASELKKEFEEV-------- 169 (216)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------
Q ss_pred HHHHHHHHHHHHHHH
Q 007579 511 ALNEALTAEVRRLKV 525 (597)
Q Consensus 511 ALnEaLkeEVqrLK~ 525 (597)
.+.++.|+.++..
T Consensus 170 --s~~~k~El~rF~~ 182 (216)
T cd07627 170 --SELIKSELERFER 182 (216)
T ss_pred --HHHHHHHHHHHHH
No 264
>KOG1103 consensus Predicted coiled-coil protein [Function unknown]
Probab=73.27 E-value=11 Score=41.55 Aligned_cols=63 Identities=21% Similarity=0.283 Sum_probs=46.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007579 443 RQSAARSKERKMRYISELEHKVQTLQTEATTLSAQLTLLQRDSVGLTNQNNELKFRLQAMEQQ 505 (597)
Q Consensus 443 RESAaRSReRKKqYIeELE~KVq~LQtEN~tLsaQLtlLqre~~~L~aEN~ELK~RLqaLEqQ 505 (597)
-+.|+-.|+|-.+--...|..+..+..|...|++++..+++....|..|+..||.-+..+|-.
T Consensus 226 eee~aaERerglqteaqvek~i~EfdiEre~LRAel~ree~r~K~lKeEmeSLkeiVkdlEA~ 288 (561)
T KOG1103|consen 226 EEEAAAERERGLQTEAQVEKLIEEFDIEREFLRAELEREEKRQKMLKEEMESLKEIVKDLEAD 288 (561)
T ss_pred hHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Confidence 356666677777777777777777777778888888877777777777777777776666533
No 265
>COG0172 SerS Seryl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=73.22 E-value=47 Score=37.13 Aligned_cols=71 Identities=27% Similarity=0.352 Sum_probs=40.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCCCC
Q 007579 461 EHKVQTLQTEATTLSAQLTLLQR----DSVGLTNQNNELKFRLQAMEQQAQLRDALNEALTAEVRRLKVATQEMASESDP 536 (597)
Q Consensus 461 E~KVq~LQtEN~tLsaQLtlLqr----e~~~L~aEN~ELK~RLqaLEqQaqLrdALnEaLkeEVqrLK~a~gEi~~~~~~ 536 (597)
..+++.|+.+-+.|+++|..... ....|.++-+.|+.+|..+ +...+.+.+|++.+-..++.|+...-+
T Consensus 42 ~~~~e~l~~~rn~~sk~ig~~~~~~~~~~~~l~~e~~~l~~~l~~~-------e~~~~~~~~~l~~~ll~ipNi~~~~VP 114 (429)
T COG0172 42 LRELEELQAERNELSKEIGRALKRGEDDAEELIAEVKELKEKLKEL-------EAALDELEAELDTLLLTIPNIPHESVP 114 (429)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHhc-------cHHHHHHHHHHHHHHHhCCCCCccccC
Confidence 34444455555555555542111 1234555555555555555 344556677888888999988887654
Q ss_pred Cc
Q 007579 537 SK 538 (597)
Q Consensus 537 ~~ 538 (597)
.+
T Consensus 115 vg 116 (429)
T COG0172 115 VG 116 (429)
T ss_pred cC
Confidence 33
No 266
>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain.
Probab=73.21 E-value=37 Score=36.54 Aligned_cols=27 Identities=19% Similarity=0.209 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007579 456 YISELEHKVQTLQTEATTLSAQLTLLQ 482 (597)
Q Consensus 456 YIeELE~KVq~LQtEN~tLsaQLtlLq 482 (597)
.+.-+..+++.|+.+|..|+..-..++
T Consensus 42 El~~ek~~~~~L~~e~~~lr~~sv~~~ 68 (310)
T PF09755_consen 42 ELETEKARCKHLQEENRALREASVRIQ 68 (310)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444555566666666555544443
No 267
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=73.01 E-value=69 Score=40.11 Aligned_cols=6 Identities=33% Similarity=0.656 Sum_probs=2.6
Q ss_pred ccCCCC
Q 007579 279 ALNSSG 284 (597)
Q Consensus 279 ~ln~~~ 284 (597)
.||.++
T Consensus 57 rln~~~ 62 (1353)
T TIGR02680 57 RLEPDG 62 (1353)
T ss_pred ccCCCC
Confidence 344444
No 268
>KOG0709 consensus CREB/ATF family transcription factor [Transcription]
Probab=72.93 E-value=12 Score=42.12 Aligned_cols=65 Identities=28% Similarity=0.332 Sum_probs=44.5
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007579 434 KRAKRILANRQSAARSKERKMRYISELEHKVQ----TLQTEATTLSAQLTLLQRDSVGLTNQNNELKFRLQAM 502 (597)
Q Consensus 434 KR~KRILaNRESAaRSReRKKqYIeELE~KVq----~LQtEN~tLsaQLtlLqre~~~L~aEN~ELK~RLqaL 502 (597)
|+..|+|+. -|-|.|+|+--.|=.+|.+ .|+.....-.++..+|+++...|+.+|..|-++|..|
T Consensus 244 KaEEriLKr----vRRKIrNK~SAQESRrkKkeYid~LE~rv~~~taeNqeL~kkV~~Le~~N~sLl~qL~kl 312 (472)
T KOG0709|consen 244 KAEERILKR----VRRKIRNKRSAQESRRKKKEYIDGLESRVSAFTAENQELQKKVEELELSNRSLLAQLKKL 312 (472)
T ss_pred HHHHHHHHH----HHHHHHhhhhhHHHHHhHhhHHHHHhhhhhhcccCcHHHHHHHHHHhhccHHHHHHHHHH
Confidence 555555542 2557777777777666654 5666677777777778888888888888887777666
No 269
>PLN02939 transferase, transferring glycosyl groups
Probab=72.79 E-value=1.2e+02 Score=37.24 Aligned_cols=25 Identities=24% Similarity=0.240 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 007579 481 LQRDSVGLTNQNNELKFRLQAMEQQ 505 (597)
Q Consensus 481 Lqre~~~L~aEN~ELK~RLqaLEqQ 505 (597)
|-.++..|..||..||..++.|..+
T Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~~~~ 248 (977)
T PLN02939 224 LSKELDVLKEENMLLKDDIQFLKAE 248 (977)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 3456667777777777777776544
No 270
>KOG3119 consensus Basic region leucine zipper transcription factor [Transcription]
Probab=72.64 E-value=20 Score=37.11 Aligned_cols=38 Identities=16% Similarity=0.256 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccC
Q 007579 495 LKFRLQAMEQQAQLRDALNEALTAEVRRLKVATQEMAS 532 (597)
Q Consensus 495 LK~RLqaLEqQaqLrdALnEaLkeEVqrLK~a~gEi~~ 532 (597)
+++|+..|+.+........+.|+.|+..|+....+...
T Consensus 220 ~~~r~~~leken~~lr~~v~~l~~el~~~~~~~~~~~~ 257 (269)
T KOG3119|consen 220 MAHRVAELEKENEALRTQVEQLKKELATLRRLFLQLPK 257 (269)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 33333333333333333344444555555555554433
No 271
>PF09727 CortBP2: Cortactin-binding protein-2; InterPro: IPR019131 This entry represents a N-terminal domain found in cortactin-binding protein 2 and in filamin A interacting protein 1 (Filip1). In addition to being a positional candidate for autism, cortactin-binding protein 2 is expressed at highest levels in the brain in humans. Towards the C-terminal end of this protein are a series of proline-rich regions which are likely to be the points of interaction with the SH3 domain of cortactin. The human protein has six associated ankyrin repeat domains (IPR002110 from INTERPRO) towards the C terminus of the protein which act as protein-protein interaction domains []. Filip1 controls the start of neocortical cell migration from the ventricular zone by acting through a filamin-A/F-actin axis. It may be able to induce the degradation of Filamin A [, ].
Probab=72.59 E-value=1e+02 Score=31.22 Aligned_cols=30 Identities=30% Similarity=0.495 Sum_probs=16.6
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Q 007579 434 KRAKRILANRQSAARSKERKMRYISELEHKVQ 465 (597)
Q Consensus 434 KR~KRILaNRESAaRSReRKKqYIeELE~KVq 465 (597)
|+.-+.+..--.|+.+|.||. |.+||.+..
T Consensus 94 k~~q~Rm~~qL~~aE~rhrr~--i~eLe~EKr 123 (192)
T PF09727_consen 94 KKMQRRMLEQLAAAEKRHRRT--IQELEEEKR 123 (192)
T ss_pred HHHHHHHHHHHHHHHHHHHHH--HHHHHHHHH
Confidence 333444455566666666666 555655443
No 272
>TIGR03319 YmdA_YtgF conserved hypothetical protein YmdA/YtgF.
Probab=72.58 E-value=1.1e+02 Score=34.60 Aligned_cols=32 Identities=16% Similarity=0.249 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007579 474 LSAQLTLLQRDSVGLTNQNNELKFRLQAMEQQ 505 (597)
Q Consensus 474 LsaQLtlLqre~~~L~aEN~ELK~RLqaLEqQ 505 (597)
|..+...|.+....|....++|..+-+.|+++
T Consensus 85 L~qRee~Lekr~e~Lekre~~Le~ke~~L~~r 116 (514)
T TIGR03319 85 LLQREETLDRKMESLDKKEENLEKKEKELSNK 116 (514)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444444444433
No 273
>PF11180 DUF2968: Protein of unknown function (DUF2968); InterPro: IPR021350 This family of proteins has no known function.
Probab=72.57 E-value=90 Score=31.74 Aligned_cols=70 Identities=20% Similarity=0.305 Sum_probs=41.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 007579 459 ELEHKVQTLQTEATTLSAQLTLLQRDSVGLTNQNNELKFRLQAMEQQAQLRDALNEALTAEVRRLKVATQ 528 (597)
Q Consensus 459 ELE~KVq~LQtEN~tLsaQLtlLqre~~~L~aEN~ELK~RLqaLEqQaqLrdALnEaLkeEVqrLK~a~g 528 (597)
-+|+.+..-+.....|...+...+.+-........+.+.+.++|+.+..-..+....|...|..|.....
T Consensus 116 ~~eR~ia~~~~ra~~LqaDl~~~~~Q~~~va~~Q~q~r~ea~aL~~e~~aaqaQL~~lQ~qv~~Lq~q~~ 185 (192)
T PF11180_consen 116 QLERLIAESEARANRLQADLQIARQQQQQVAARQQQARQEAQALEAERRAAQAQLRQLQRQVRQLQRQAN 185 (192)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3444444455555555556666666666666666666666666666655555556666666766666554
No 274
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]
Probab=72.54 E-value=18 Score=46.34 Aligned_cols=68 Identities=26% Similarity=0.293 Sum_probs=40.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHH
Q 007579 459 ELEHKVQTLQTEATTLSAQLTLLQRDSVGLTNQNNELKFRLQAMEQQ-AQLRDALNEALTAEVRRLKVA 526 (597)
Q Consensus 459 ELE~KVq~LQtEN~tLsaQLtlLqre~~~L~aEN~ELK~RLqaLEqQ-aqLrdALnEaLkeEVqrLK~a 526 (597)
.|+..+.-|+.++++|.+++.....+..-|..++...|+|-+.|..+ ...--...+.|+.||.+|+.-
T Consensus 1254 kl~~el~plq~~l~el~~e~~~~~ael~~l~~e~~~wK~R~q~L~~k~k~~d~~~~~kL~~ei~~Lk~e 1322 (1822)
T KOG4674|consen 1254 KLNFELAPLQNELKELKAELQEKVAELKKLEEENDRWKQRNQDLLEKYKDSDKNDYEKLKSEISRLKEE 1322 (1822)
T ss_pred HHHhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHH
Confidence 33444445566667777777777777777777777777777777544 222223344455555555443
No 275
>PF06632 XRCC4: DNA double-strand break repair and V(D)J recombination protein XRCC4; InterPro: IPR010585 This entry represents the DNA double-strand break repair and V(D)J recombination protein XRCC4, which is found in certain Metazoans, fungi and plants. XRCC4 binds to DNA, and to DNA ligase IV (LIG4) to form the LIG4-XRCC4 complex []. The LIG4-XRCC4 complex is responsible for the ligation step in the non-homologous end joining (NHEJ) pathway of DNA double-strand break repair. XRCC4 enhances the joining activity of LIG4. It is thought that XRCC4 and LIG4 are essential for alignment-based gap filling, as well as for final ligation of the breaks []. Binding of the LIG4-XRCC4 complex to DNA ends is dependent on the assembly of the DNA-dependent protein kinase complex DNA-PK to these DNA ends. ; GO: 0003677 DNA binding, 0006302 double-strand break repair, 0006310 DNA recombination, 0005634 nucleus; PDB: 3RWR_R 1IK9_B 3SR2_E 3Q4F_H 3II6_B 1FU1_A 3MUD_B.
Probab=72.45 E-value=51 Score=35.68 Aligned_cols=21 Identities=29% Similarity=0.341 Sum_probs=8.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 007579 462 HKVQTLQTEATTLSAQLTLLQ 482 (597)
Q Consensus 462 ~KVq~LQtEN~tLsaQLtlLq 482 (597)
.+.+.|+.+...|.+++..+-
T Consensus 151 ~enerL~~e~~~~~~qlE~~v 171 (342)
T PF06632_consen 151 KENERLESEANKLLKQLEKFV 171 (342)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 333333344444444443333
No 276
>PF04102 SlyX: SlyX; InterPro: IPR007236 The SlyX protein has no known function. It is short, less than 80 amino acids, and its gene is found close to the slyD gene. The SlyX protein has a conserved PPH(Y/W) motif at its C terminus. The protein may be a coiled-coil structure.; PDB: 3EFG_A.
Probab=72.39 E-value=23 Score=29.70 Aligned_cols=41 Identities=17% Similarity=0.224 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007579 460 LEHKVQTLQTEATTLSAQLTLLQRDSVGLTNQNNELKFRLQ 500 (597)
Q Consensus 460 LE~KVq~LQtEN~tLsaQLtlLqre~~~L~aEN~ELK~RLq 500 (597)
||.++..|++..+-+...|..|.........+...|+.+|.
T Consensus 2 le~Ri~~LE~~la~qe~~ie~Ln~~v~~Qq~~I~~L~~~l~ 42 (69)
T PF04102_consen 2 LEERIEELEIKLAFQEDTIEELNDVVTEQQRQIDRLQRQLR 42 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56677777666666666665555444433333333333333
No 277
>PRK00106 hypothetical protein; Provisional
Probab=72.20 E-value=1.1e+02 Score=35.24 Aligned_cols=34 Identities=21% Similarity=0.380 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007579 474 LSAQLTLLQRDSVGLTNQNNELKFRLQAMEQQAQ 507 (597)
Q Consensus 474 LsaQLtlLqre~~~L~aEN~ELK~RLqaLEqQaq 507 (597)
|..+...|.+....|.....+|..+...|+.+..
T Consensus 106 L~qREE~LekRee~LekrE~eLe~kekeLe~ree 139 (535)
T PRK00106 106 LTERATSLDRKDENLSSKEKTLESKEQSLTDKSK 139 (535)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555555555555555555555555544444433
No 278
>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]
Probab=72.19 E-value=1.2e+02 Score=32.51 Aligned_cols=85 Identities=24% Similarity=0.364 Sum_probs=40.2
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHH----
Q 007579 438 RILANRQSAARSKERKMRYISELEHKVQTLQTEATTLSAQLTLLQRDSVGLTNQNNELKFRLQAMEQQ-AQLRDAL---- 512 (597)
Q Consensus 438 RILaNRESAaRSReRKKqYIeELE~KVq~LQtEN~tLsaQLtlLqre~~~L~aEN~ELK~RLqaLEqQ-aqLrdAL---- 512 (597)
..+.+..++-+++. ++|-.+|..+......|..+-..+..+...|..+-.++..+++.|-+. ..++...
T Consensus 30 ~El~~~~~~~~ekR------deln~kvrE~~e~~~elr~~rdeineev~elK~kR~ein~kl~eL~~~~~~l~e~~~~~~ 103 (294)
T COG1340 30 DELRKEASELAEKR------DELNAKVRELREKAQELREERDEINEEVQELKEKRDEINAKLQELRKEYRELKEKRNEFN 103 (294)
T ss_pred HHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence 44444445444443 234444555555555555555555555555555555555555444332 1222222
Q ss_pred -----HHHHHHHHHHHHHHhc
Q 007579 513 -----NEALTAEVRRLKVATQ 528 (597)
Q Consensus 513 -----nEaLkeEVqrLK~a~g 528 (597)
.+.|..++++|....-
T Consensus 104 ~~~~~~~~ler~i~~Le~~~~ 124 (294)
T COG1340 104 LGGRSIKSLEREIERLEKKQQ 124 (294)
T ss_pred ccCCCHHHHHHHHHHHHHHHH
Confidence 3445566666655443
No 279
>PRK02793 phi X174 lysis protein; Provisional
Probab=71.95 E-value=30 Score=29.52 Aligned_cols=30 Identities=17% Similarity=0.203 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007579 458 SELEHKVQTLQTEATTLSAQLTLLQRDSVG 487 (597)
Q Consensus 458 eELE~KVq~LQtEN~tLsaQLtlLqre~~~ 487 (597)
.+||.++..|+...+-+...|..|......
T Consensus 4 ~~~e~Ri~~LE~~lafQe~tIe~Ln~~v~~ 33 (72)
T PRK02793 4 SSLEARLAELESRLAFQEITIEELNVTVTA 33 (72)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 357777777777666666666655544333
No 280
>PF05529 Bap31: B-cell receptor-associated protein 31-like ; InterPro: IPR008417 Bap31 is a polytopic integral protein of the endoplasmic reticulum membrane and a substrate of caspase-8. Bap31 is cleaved within its cytosolic domain, generating pro-apoptotic p20 Bap31 [].; GO: 0006886 intracellular protein transport, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=71.90 E-value=40 Score=32.49 Aligned_cols=34 Identities=18% Similarity=0.320 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007579 491 QNNELKFRLQAMEQQAQLRDALNEALTAEVRRLK 524 (597)
Q Consensus 491 EN~ELK~RLqaLEqQaqLrdALnEaLkeEVqrLK 524 (597)
++..++..++.++.++.-.+.-.++|++.+++|.
T Consensus 155 ~~~~~~~ei~~lk~el~~~~~~~~~LkkQ~~~l~ 188 (192)
T PF05529_consen 155 ENKKLSEEIEKLKKELEKKEKEIEALKKQSEGLQ 188 (192)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444445555555555543
No 281
>PF05791 Bacillus_HBL: Bacillus haemolytic enterotoxin (HBL); InterPro: IPR008414 This family consists of several Bacillus haemolytic enterotoxins (HblC, HblD, HblA, NheA, and NheB), which can cause food poisoning in humans []. Haemolysin BL (encoded by HBL) and non-haemolytic enterotoxin (encoded by NHE), represent the major enterotoxins produced by Bacillus cereus. Most of the cytotoxic activity of B. cereus isolates has been attributed to the level of Nhe, which may indicate a highly diarrheic potential []. The exact mechanism by which B. cereus causes diarrhoea is unknown. Hbl, cytotoxin K (CytK) and Nhe are all putative causes. Both Hbl and Nhe are three-component cytotoxins and maximal cytotoxicity of Nhe against epithelia is dependent on all three components. Nhe has haemolytic activity against erythrocytes from a variety of species. It is possible that the common structural and functional properties of these toxins indicate that the Hbl/Nhe and ClyA families of toxins constitute a superfamily of pore-forming cytotoxins []. The high virulence of some strains is thought to be due to the greater cytotoxic activity of CytK-1 compared to CytK-2, and to a high level of cytK expression []. Haemolysin BL and non-haemolytic enterotoxin production are both influenced by pH and micro []. This entry is found in cytotoxic proteins that form part of the enterotoxin complex and bind to erythrocytes. HblA is composed of a binding component, B, and two lytic components, L1 and L2. All three subunits act synergically to cause hemolysis.; GO: 0009405 pathogenesis, 0016020 membrane; PDB: 2NRJ_A.
Probab=71.86 E-value=42 Score=32.73 Aligned_cols=79 Identities=16% Similarity=0.232 Sum_probs=50.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007579 447 ARSKERKMRYISELEHKVQTLQTEATTLSAQLTLLQRDSVGLTNQNNELKFRLQAMEQQAQLRDALNEALTAEVRRLKVA 526 (597)
Q Consensus 447 aRSReRKKqYIeELE~KVq~LQtEN~tLsaQLtlLqre~~~L~aEN~ELK~RLqaLEqQaqLrdALnEaLkeEVqrLK~a 526 (597)
...++.-++.|..|..++..-+.+...+..+|..++. .|....+.|+.....+..-+.-..+..+.|++||+.++..
T Consensus 102 ~~~~~~~~~~i~~L~~~i~~~q~~~~~~i~~L~~f~~---~l~~D~~~l~~~~~~l~~~l~~~~g~I~~L~~~I~~~~~~ 178 (184)
T PF05791_consen 102 QKDKEDLKEIIEDLQDQIQKNQDKVQALINELNDFKD---KLQKDSRNLKTDVDELQSILAGENGDIPQLQKQIENLNEE 178 (184)
T ss_dssp HT-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHTT--HHHHHHHHHHHTGG
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHhHHHHHHHHhcccCCHHHHHHHHHHHHHH
Confidence 4455555667777777777777777777766666654 4556666666666666555555556777888888777765
Q ss_pred hc
Q 007579 527 TQ 528 (597)
Q Consensus 527 ~g 528 (597)
+.
T Consensus 179 I~ 180 (184)
T PF05791_consen 179 IK 180 (184)
T ss_dssp G-
T ss_pred HH
Confidence 53
No 282
>PF07200 Mod_r: Modifier of rudimentary (Mod(r)) protein; InterPro: IPR009851 This entry represents a conserved region approximately 150 residues long within a number of eukaryotic proteins that show homology with Drosophila melanogaster Modifier of rudimentary (Mod(r)) proteins. The N-terminal half of Mod(r) proteins is acidic, whereas the C-terminal half is basic [], and both of these regions are represented in this family.; PDB: 2CAZ_F 2P22_C 2F66_F.
Probab=71.74 E-value=84 Score=29.03 Aligned_cols=81 Identities=20% Similarity=0.231 Sum_probs=36.8
Q ss_pred hcchHHHHhhhccChHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007579 419 IMANEKLAEIALTDPKRAKRILANRQSAARSKERKMRYISELEHKVQTLQTEATTLSAQLTLLQRDSVGLTNQNNELKFR 498 (597)
Q Consensus 419 im~~ekLaElAl~DpKR~KRILaNRESAaRSReRKKqYIeELE~KVq~LQtEN~tLsaQLtlLqre~~~L~aEN~ELK~R 498 (597)
.++.+.|.++. .|+.....++.+=..-+..+ ..++.|......|-..|-.+..++..++.++..+..+-+.|+.+
T Consensus 3 ~lS~~eL~~Ll-~d~~~l~~~v~~l~~~~~~~----~~~~~l~~~n~~lAe~nL~~~~~l~~~r~~l~~~~~~~~~L~~~ 77 (150)
T PF07200_consen 3 DLSTEELQELL-SDEEKLDAFVKSLPQVQELQ----QEREELLAENEELAEQNLSLEPELEELRSQLQELYEELKELESE 77 (150)
T ss_dssp S-TTHHHHHHH-HH-HHHHHHGGGGS--HHHH----HHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHH-cCHHHHHHHHHcCHHHHHHH----HHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHH
Confidence 35666777764 35566666665533332222 22333444444444444444444555555555555555555555
Q ss_pred HHHHHH
Q 007579 499 LQAMEQ 504 (597)
Q Consensus 499 LqaLEq 504 (597)
...+.+
T Consensus 78 ~~~k~~ 83 (150)
T PF07200_consen 78 YQEKEQ 83 (150)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 544443
No 283
>PF05483 SCP-1: Synaptonemal complex protein 1 (SCP-1); InterPro: IPR008827 Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase [].; GO: 0007130 synaptonemal complex assembly, 0000795 synaptonemal complex
Probab=71.69 E-value=38 Score=40.08 Aligned_cols=60 Identities=22% Similarity=0.313 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007579 465 QTLQTEATTLSAQLTLLQRDSVGLTNQNNELKFRLQAMEQQAQLRDALNEALTAEVRRLK 524 (597)
Q Consensus 465 q~LQtEN~tLsaQLtlLqre~~~L~aEN~ELK~RLqaLEqQaqLrdALnEaLkeEVqrLK 524 (597)
..|+.....|+.+|+.-......|..+|..||.++.+-..+....+.....|..|++.++
T Consensus 590 k~lenk~~~LrKqvEnk~K~ieeLqqeNk~LKKk~~aE~kq~~~~eikVn~L~~E~e~~k 649 (786)
T PF05483_consen 590 KILENKCNNLRKQVENKNKNIEELQQENKALKKKITAESKQSNVYEIKVNKLQEELENLK 649 (786)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444445555555555444433333333333333333333333
No 284
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=71.68 E-value=14 Score=41.58 Aligned_cols=31 Identities=16% Similarity=0.257 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007579 472 TTLSAQLTLLQRDSVGLTNQNNELKFRLQAM 502 (597)
Q Consensus 472 ~tLsaQLtlLqre~~~L~aEN~ELK~RLqaL 502 (597)
.+|.++|+.|+++...|..++..+..+|+.|
T Consensus 79 sELEKqLaaLrqElq~~saq~~dle~KIkeL 109 (475)
T PRK13729 79 AQMQKQYEEIRRELDVLNKQRGDDQRRIEKL 109 (475)
T ss_pred HHHHHHHHHHHHHHHHHhhhhhhHHHHHHHH
Confidence 3334444444333333334444444444443
No 285
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=71.38 E-value=61 Score=39.87 Aligned_cols=92 Identities=23% Similarity=0.301 Sum_probs=49.6
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007579 434 KRAKRILANRQSAARSKERKMRY---ISELEHKVQTLQTEATTLSAQLTLLQRDSVGLTNQNNELKFRLQAMEQQAQLRD 510 (597)
Q Consensus 434 KR~KRILaNRESAaRSReRKKqY---IeELE~KVq~LQtEN~tLsaQLtlLqre~~~L~aEN~ELK~RLqaLEqQaqLrd 510 (597)
+++++|-.+|.-..+.+..++.. +..+..+...|+.+...+..++..+++++..+. .+++.++..+++.....+
T Consensus 785 ~~l~~ie~~r~~V~eY~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~---~~~~~~~~~le~~~~~~~ 861 (1201)
T PF12128_consen 785 KELKRIEERRAEVIEYEDWLQEEWDKVDELREEKPELEEQLRDLEQELQELEQELNQLQ---KEVKQRRKELEEELKALE 861 (1201)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHH
Confidence 55666777777777777777765 334555566666666666666666655443333 333344444444444444
Q ss_pred HHHHHHHHHHHHHHHHhc
Q 007579 511 ALNEALTAEVRRLKVATQ 528 (597)
Q Consensus 511 ALnEaLkeEVqrLK~a~g 528 (597)
...+.+.+-+.+|+....
T Consensus 862 ~~~~~~~~~l~~l~~~~~ 879 (1201)
T PF12128_consen 862 EQLEQLEEQLRRLRDLLE 879 (1201)
T ss_pred HHHHHHHHHHHHHHHHHh
Confidence 444444333444443333
No 286
>KOG3650 consensus Predicted coiled-coil protein [General function prediction only]
Probab=71.25 E-value=16 Score=34.03 Aligned_cols=44 Identities=20% Similarity=0.288 Sum_probs=36.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007579 460 LEHKVQTLQTEATTLSAQLTLLQRDSVGLTNQNNELKFRLQAME 503 (597)
Q Consensus 460 LE~KVq~LQtEN~tLsaQLtlLqre~~~L~aEN~ELK~RLqaLE 503 (597)
|-.+|-.||.-...|++++....+++-.|..||..|-+.|+.|.
T Consensus 61 lItQVLELQnTLdDLSqRVdsVKEEnLKLrSENQVLGQYIeNLM 104 (120)
T KOG3650|consen 61 LITQVLELQNTLDDLSQRVDSVKEENLKLRSENQVLGQYIENLM 104 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHH
Confidence 34556667777788999999999999999999999999887764
No 287
>PF11365 DUF3166: Protein of unknown function (DUF3166); InterPro: IPR021507 This eukaryotic family of proteins has no known function.
Probab=71.15 E-value=59 Score=29.69 Aligned_cols=44 Identities=27% Similarity=0.354 Sum_probs=38.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007579 457 ISELEHKVQTLQTEATTLSAQLTLLQRDSVGLTNQNNELKFRLQ 500 (597)
Q Consensus 457 IeELE~KVq~LQtEN~tLsaQLtlLqre~~~L~aEN~ELK~RLq 500 (597)
..||.+.++..+.|..-|++.++.|+.++..|+.|-+.+|...-
T Consensus 3 ~aeLR~qLqFvEEEa~LlRRkl~ele~eN~~l~~EL~kyk~~~g 46 (96)
T PF11365_consen 3 SAELRRQLQFVEEEAELLRRKLSELEDENKQLTEELNKYKSKYG 46 (96)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 36899999999999999999999999999999998888887663
No 288
>PF15035 Rootletin: Ciliary rootlet component, centrosome cohesion
Probab=71.11 E-value=64 Score=31.97 Aligned_cols=46 Identities=26% Similarity=0.271 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 007579 476 AQLTLLQRDSVGLTNQNNELKFRLQAMEQQAQLRDALNEALTAEVRRLKVATQ 528 (597)
Q Consensus 476 aQLtlLqre~~~L~aEN~ELK~RLqaLEqQaqLrdALnEaLkeEVqrLK~a~g 528 (597)
.+|.+=++.+..|..-|..|+.+|+.+ ...|++|+.|+++|.....
T Consensus 67 ~rLeEEqqR~~~L~qvN~lLReQLEq~-------~~~N~~L~~dl~klt~~~~ 112 (182)
T PF15035_consen 67 IRLEEEQQRSEELAQVNALLREQLEQA-------RKANEALQEDLQKLTQDWE 112 (182)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHH
Confidence 333344444555555555555555444 2346666666666555443
No 289
>PF07246 Phlebovirus_NSM: Phlebovirus nonstructural protein NS-M; InterPro: IPR009879 This entry consists of several Phlebovirus nonstructural NS-M proteins, which represent the N-terminal region of the M polyprotein precursor. The function of this family is unknown.
Probab=70.94 E-value=41 Score=35.50 Aligned_cols=67 Identities=15% Similarity=0.228 Sum_probs=35.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 007579 462 HKVQTLQTEATTLSAQLTLLQRDSVGLTNQNNELKFRLQAMEQQAQLRDALNEALTAEVRRLKVATQE 529 (597)
Q Consensus 462 ~KVq~LQtEN~tLsaQLtlLqre~~~L~aEN~ELK~RLqaLEqQaqLrdALnEaLkeEVqrLK~a~gE 529 (597)
++.+.|+.+...|...+..+++. ..+.....++..+.+.+..+..++.......++++.+|+.....
T Consensus 175 ~~i~~l~~~l~~~~~~~~~~~~~-~~~~~~~~e~~~r~~~lr~~~~~l~~el~~aK~~~~~~~~~~~~ 241 (264)
T PF07246_consen 175 HEISNLTNELSNLRNDIDKFQER-EDEKILHEELEARESGLRNESKWLEHELSDAKEDMIRLRNDISD 241 (264)
T ss_pred HHHHHhhhhHHHhhchhhhhhhh-hhHHHHHHHHHHhHhhhHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 44555555555555544444332 34444555555555555555555555566666677777666543
No 290
>PF04977 DivIC: Septum formation initiator; InterPro: IPR007060 DivIC, from the spore-forming, Gram-positive bacterium Bacillus subtilis, is necessary for both vegetative and sporulation septum formation []. These proteins are mainly composed of an N-terminal coiled-coil. DivIB, DivIC and FtsL inter-depend on each other for stabilisation and localisation. The latter two form a heterodimer. DivIC is always centre cell but the other two associate with it during septation [].; GO: 0007049 cell cycle
Probab=70.86 E-value=14 Score=30.02 Aligned_cols=29 Identities=28% Similarity=0.460 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007579 474 LSAQLTLLQRDSVGLTNQNNELKFRLQAM 502 (597)
Q Consensus 474 LsaQLtlLqre~~~L~aEN~ELK~RLqaL 502 (597)
+..++..|+++...+..+|..|+.+++.|
T Consensus 22 ~~~ei~~l~~~i~~l~~e~~~L~~ei~~l 50 (80)
T PF04977_consen 22 LNQEIAELQKEIEELKKENEELKEEIERL 50 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34444444444444455555555555544
No 291
>PF04977 DivIC: Septum formation initiator; InterPro: IPR007060 DivIC, from the spore-forming, Gram-positive bacterium Bacillus subtilis, is necessary for both vegetative and sporulation septum formation []. These proteins are mainly composed of an N-terminal coiled-coil. DivIB, DivIC and FtsL inter-depend on each other for stabilisation and localisation. The latter two form a heterodimer. DivIC is always centre cell but the other two associate with it during septation [].; GO: 0007049 cell cycle
Probab=70.86 E-value=18 Score=29.45 Aligned_cols=29 Identities=24% Similarity=0.397 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007579 453 KMRYISELEHKVQTLQTEATTLSAQLTLL 481 (597)
Q Consensus 453 KKqYIeELE~KVq~LQtEN~tLsaQLtlL 481 (597)
+++.+.+|+.+++.|+.+|..|..++..|
T Consensus 22 ~~~ei~~l~~~i~~l~~e~~~L~~ei~~l 50 (80)
T PF04977_consen 22 LNQEIAELQKEIEELKKENEELKEEIERL 50 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44456666666666666666666666655
No 292
>PF07412 Geminin: Geminin; InterPro: IPR022786 This family contains the eukaryotic protein geminin (approximately 200 residues long). Geminin inhibits DNA replication by preventing the incorporation of MCM complex into prereplication complex, and is degraded during the mitotic phase of the cell cycle. It has been proposed that geminin inhibits DNA replication during S, G2, and M phases and that geminin destruction at the metaphase-anaphase transition permits replication in the succeeding cell cycle []. ; GO: 0008156 negative regulation of DNA replication; PDB: 1T6F_B 2LP0_B 1UII_B 2WVR_B 2ZXX_B.
Probab=70.67 E-value=14 Score=37.36 Aligned_cols=29 Identities=24% Similarity=0.310 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007579 469 TEATTLSAQLTLLQRDSVGLTNQNNELKF 497 (597)
Q Consensus 469 tEN~tLsaQLtlLqre~~~L~aEN~ELK~ 497 (597)
.||..|...|..++.++..|..||.+|+.
T Consensus 125 ~ENe~Lh~~ie~~~eEi~~lk~en~~L~e 153 (200)
T PF07412_consen 125 EENEKLHKEIEQKDEEIAKLKEENEELKE 153 (200)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHCCHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 57888999999888888888888888776
No 293
>TIGR03319 YmdA_YtgF conserved hypothetical protein YmdA/YtgF.
Probab=70.67 E-value=1.2e+02 Score=34.39 Aligned_cols=26 Identities=19% Similarity=0.271 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007579 445 SAARSKERKMRYISELEHKVQTLQTE 470 (597)
Q Consensus 445 SAaRSReRKKqYIeELE~KVq~LQtE 470 (597)
+-...+..++++..+.+.++.....+
T Consensus 41 A~~eAke~~ke~~~EaeeE~~~~R~E 66 (514)
T TIGR03319 41 AKKEAETLKKEALLEAKEEVHKLRAE 66 (514)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444555555555444444333
No 294
>KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton]
Probab=70.63 E-value=12 Score=44.58 Aligned_cols=14 Identities=29% Similarity=0.204 Sum_probs=8.0
Q ss_pred CCCccchhhccccc
Q 007579 229 GVAKPAQLVKKESS 242 (597)
Q Consensus 229 ~~~k~~~lv~~e~~ 242 (597)
.+-||-.+.|.|-+
T Consensus 612 ~gLkpKK~~k~e~~ 625 (1102)
T KOG1924|consen 612 FGLKPKKVYKPEVP 625 (1102)
T ss_pred CCCCccccCCCCCc
Confidence 44566666666554
No 295
>PF06216 RTBV_P46: Rice tungro bacilliform virus P46 protein; InterPro: IPR009347 This family consists of several Rice tungro bacilliform virus P46 proteins. The function of this family is unknown.
Probab=70.60 E-value=20 Score=38.01 Aligned_cols=49 Identities=22% Similarity=0.294 Sum_probs=36.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007579 455 RYISELEHKVQTLQTEATTLSAQLTLLQRDSVGLTNQNNELKFRLQAME 503 (597)
Q Consensus 455 qYIeELE~KVq~LQtEN~tLsaQLtlLqre~~~L~aEN~ELK~RLqaLE 503 (597)
.||=.||-+.+....|...|..|+..|+.+...+.++.++.|..|+.|.
T Consensus 64 ~~~y~~e~e~~sy~~e~~~l~~qvs~l~~~~~~~r~~~~~~~~~~eglr 112 (389)
T PF06216_consen 64 DYIYNKEFERQSYSNEWISLNDQVSHLQHQNSEQRQQIREMREIIEGLR 112 (389)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 4666777788888888888888888888777777777777776666653
No 296
>PF02050 FliJ: Flagellar FliJ protein; InterPro: IPR012823 Many flagellar proteins are exported by a flagellum-specific export pathway. Attempts have been made to characterise the apparatus responsible for this process, by designing assays to screen for mutants with export defects []. Experiments involving filament removal from temperature-sensitive flagellar mutants of Salmonella typhimurium have shown that, while most mutants were able to regrow filaments, flhA, fliH, fliI and fliN mutants showed no or greatly reduced regrowth. This suggests that the corresponding gene products are involved in the process of flagellum-specific export. The sequences of fliH, fliI and the adjacent gene, fliJ, have been deduced. FliJ was shown to encode a protein of molecular mass 17,302 Da []. It is a membrane-associated protein that affects chemotactic events, mutations in FliJ result in failure to respond to chemotactic stimuli.; GO: 0003774 motor activity, 0001539 ciliary or flagellar motility, 0006935 chemotaxis, 0009288 bacterial-type flagellum, 0016020 membrane, 0044461 bacterial-type flagellum part; PDB: 3AJW_A.
Probab=70.31 E-value=64 Score=27.04 Aligned_cols=6 Identities=17% Similarity=0.556 Sum_probs=2.1
Q ss_pred HHHHHH
Q 007579 458 SELEHK 463 (597)
Q Consensus 458 eELE~K 463 (597)
..|+..
T Consensus 22 ~~L~~~ 27 (123)
T PF02050_consen 22 EQLQQE 27 (123)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 333333
No 297
>PF13874 Nup54: Nucleoporin complex subunit 54; PDB: 3T97_B.
Probab=70.28 E-value=40 Score=31.58 Aligned_cols=64 Identities=25% Similarity=0.333 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 007579 457 ISELEHKVQTLQTEATTLSAQLTLLQRDSVGLTNQNNELKFRLQAMEQQAQLRDALNEALTAEVRRLKVAT 527 (597)
Q Consensus 457 IeELE~KVq~LQtEN~tLsaQLtlLqre~~~L~aEN~ELK~RLqaLEqQaqLrdALnEaLkeEVqrLK~a~ 527 (597)
+.++..++..|+........++..+++ .+.+|..|+-.+-....+.....-.|..|-+.|+..+
T Consensus 53 l~~i~~~l~~L~~~~~~~~~rl~~~r~-------r~~~L~hR~l~v~~~~eilr~~g~~l~~eEe~L~~~l 116 (141)
T PF13874_consen 53 LKEINDKLEELQKHDLETSARLEEARR-------RHQELSHRLLRVLRKQEILRNRGYALSPEEEELRKRL 116 (141)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHH----------------
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence 444444555554444444444444444 4444444443333332233333333433433343333
No 298
>KOG2391 consensus Vacuolar sorting protein/ubiquitin receptor VPS23 [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=70.17 E-value=36 Score=37.24 Aligned_cols=6 Identities=50% Similarity=0.872 Sum_probs=2.2
Q ss_pred ccCCCC
Q 007579 124 SLDSLP 129 (597)
Q Consensus 124 s~dsLp 129 (597)
=+|+-|
T Consensus 76 lldtyP 81 (365)
T KOG2391|consen 76 LLDTYP 81 (365)
T ss_pred ecccCC
Confidence 333333
No 299
>PF05278 PEARLI-4: Arabidopsis phospholipase-like protein (PEARLI 4); InterPro: IPR007942 This family contains several phospholipase-like proteins from Arabidopsis thaliana and other members of the Streptophyta which are homologous to PEARLI 4.
Probab=69.89 E-value=1.3e+02 Score=31.90 Aligned_cols=17 Identities=35% Similarity=0.751 Sum_probs=10.5
Q ss_pred CCCCCC----Ccccccchhhh
Q 007579 348 GDVAST----TRHYRSVSMDS 364 (597)
Q Consensus 348 ~~~~p~----~rH~RS~SmDs 364 (597)
|||+.- ..+.||.-|+.
T Consensus 110 GDIAsNc~lkS~~~RS~yLe~ 130 (269)
T PF05278_consen 110 GDIASNCKLKSQQFRSYYLEC 130 (269)
T ss_pred ccHhhccccCcHHHHHHHHHH
Confidence 466543 34677777776
No 300
>PF06008 Laminin_I: Laminin Domain I; InterPro: IPR009254 Laminins are glycoproteins that are major constituents of the basement membrane of cells. Laminins are trimeric molecules; laminin-1 is an alpha1 beta1 gamma1 trimer. It has been suggested that the domains I and II from laminin A, B1 and B2 may come together to form a triple helical coiled-coil structure []. Binding to cells via a high affinity receptor, laminin is thought to mediate the attachment, migration and organisation of cells into tissues during embryonic development by interacting with other extracellular matrix components.; GO: 0005102 receptor binding, 0030155 regulation of cell adhesion, 0030334 regulation of cell migration, 0045995 regulation of embryonic development, 0005606 laminin-1 complex
Probab=69.85 E-value=57 Score=33.04 Aligned_cols=50 Identities=24% Similarity=0.350 Sum_probs=30.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007579 456 YISELEHKVQTLQTEATTLSAQLTLLQRDSVGLTNQNNELKFRLQAMEQQ 505 (597)
Q Consensus 456 YIeELE~KVq~LQtEN~tLsaQLtlLqre~~~L~aEN~ELK~RLqaLEqQ 505 (597)
.+..||.++..|..+...|..++.........+...-..+..+.+.|...
T Consensus 46 ~~~~~e~~l~~L~~d~~~L~~k~~~~~~~~~~l~~~t~~t~~~a~~L~~~ 95 (264)
T PF06008_consen 46 QLDPLEKELESLEQDVENLQEKATKVSRKAQQLNNNTERTLQRAQDLEQF 95 (264)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35566666666666666666666666666555555555555555555444
No 301
>PF15058 Speriolin_N: Speriolin N terminus
Probab=69.77 E-value=6.9 Score=39.57 Aligned_cols=41 Identities=27% Similarity=0.353 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007579 483 RDSVGLTNQNNELKFRLQAMEQQAQLRDALNEALTAEVRRL 523 (597)
Q Consensus 483 re~~~L~aEN~ELK~RLqaLEqQaqLrdALnEaLkeEVqrL 523 (597)
.++..|+.||.+||+++.-|.+.-.++.+|-|+..+-++|.
T Consensus 12 hqierLv~ENeeLKKlVrLirEN~eLksaL~ea~~~~~~r~ 52 (200)
T PF15058_consen 12 HQIERLVRENEELKKLVRLIRENHELKSALGEACAEPSQRQ 52 (200)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhhccccccc
Confidence 33444555666666666555555555555666665555443
No 302
>PF11180 DUF2968: Protein of unknown function (DUF2968); InterPro: IPR021350 This family of proteins has no known function.
Probab=69.77 E-value=1.3e+02 Score=30.55 Aligned_cols=84 Identities=13% Similarity=0.206 Sum_probs=55.0
Q ss_pred hhhccChHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007579 427 EIALTDPKRAKRILANRQSAARSKERKMRYISELEHKVQTLQTEATTLSAQLTLLQRDSVGLTNQNNELKFRLQAMEQQA 506 (597)
Q Consensus 427 ElAl~DpKR~KRILaNRESAaRSReRKKqYIeELE~KVq~LQtEN~tLsaQLtlLqre~~~L~aEN~ELK~RLqaLEqQa 506 (597)
.+|..|-+|+ ++.+-..-+.|.-..-+.....|...+..-+..-.....+-..++.+...|..|...+..+|..|..+.
T Consensus 99 ~LA~~eirR~-~LeAQka~~eR~ia~~~~ra~~LqaDl~~~~~Q~~~va~~Q~q~r~ea~aL~~e~~aaqaQL~~lQ~qv 177 (192)
T PF11180_consen 99 RLADVEIRRA-QLEAQKAQLERLIAESEARANRLQADLQIARQQQQQVAARQQQARQEAQALEAERRAAQAQLRQLQRQV 177 (192)
T ss_pred HHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3343343333 455666666666666666677777777777766666666777777777788888888888887776665
Q ss_pred HHHHH
Q 007579 507 QLRDA 511 (597)
Q Consensus 507 qLrdA 511 (597)
+.+..
T Consensus 178 ~~Lq~ 182 (192)
T PF11180_consen 178 RQLQR 182 (192)
T ss_pred HHHHH
Confidence 54443
No 303
>KOG4807 consensus F-actin binding protein, regulates actin cytoskeletal organization [Cytoskeleton]
Probab=69.74 E-value=54 Score=36.89 Aligned_cols=48 Identities=31% Similarity=0.437 Sum_probs=28.4
Q ss_pred HHHHHHHHHHHHHHH----------HHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHH
Q 007579 453 KMRYISELEHKVQTL----------QTEATTLSAQLTL-------LQRDSVGLTNQNNELKFRLQ 500 (597)
Q Consensus 453 KKqYIeELE~KVq~L----------QtEN~tLsaQLtl-------Lqre~~~L~aEN~ELK~RLq 500 (597)
+++|+++|+.-...| .-||..|...+.. -++++..|.+.|.+|.-||.
T Consensus 416 RrQyleelqsvqRELeVLSEQYSQKCLEnahLaqalEaerqaLRqCQrEnQELnaHNQELnnRLa 480 (593)
T KOG4807|consen 416 RRQYLEELQSVQRELEVLSEQYSQKCLENAHLAQALEAERQALRQCQRENQELNAHNQELNNRLA 480 (593)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhHHH
Confidence 456777776433322 2356666555443 34566777777777777764
No 304
>KOG2264 consensus Exostosin EXT1L [Signal transduction mechanisms]
Probab=69.65 E-value=28 Score=40.56 Aligned_cols=63 Identities=16% Similarity=0.266 Sum_probs=37.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCCC
Q 007579 473 TLSAQLTLLQRDSVGLTNQNNELKFRLQAMEQQAQLRDALNEALTAEVRRLKVATQEMASESD 535 (597)
Q Consensus 473 tLsaQLtlLqre~~~L~aEN~ELK~RLqaLEqQaqLrdALnEaLkeEVqrLK~a~gEi~~~~~ 535 (597)
+.+.++.+|+...++|..|..++..++++|.+..--.....++|+-||+.-..+..|+.....
T Consensus 90 sVs~EL~ele~krqel~seI~~~n~kiEelk~~i~~~q~eL~~Lk~~ieqaq~~~~El~~~n~ 152 (907)
T KOG2264|consen 90 SVSLELTELEVKRQELNSEIEEINTKIEELKRLIPQKQLELSALKGEIEQAQRQLEELRETNN 152 (907)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhHHHHHHHHhHHHHHHHHHHHHHhhcC
Confidence 344455555555566666666666666666544443444466677777776666666655543
No 305
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=69.58 E-value=1e+02 Score=38.13 Aligned_cols=20 Identities=35% Similarity=0.537 Sum_probs=13.7
Q ss_pred CCCCCCCccCCCCCCCCCCc
Q 007579 179 GESLPPRNKHRRSNSDIPFG 198 (597)
Q Consensus 179 ~~~LpPrk~HRRS~SD~p~G 198 (597)
|--|=-|+.-||--+-||+-
T Consensus 559 gkqLLq~g~l~rRvTiIPLn 578 (1174)
T KOG0933|consen 559 GKQLLQRGNLRRRVTIIPLN 578 (1174)
T ss_pred HHHHhhcccccceeEEEech
Confidence 34466677777878888854
No 306
>KOG4001 consensus Axonemal dynein light chain [Cytoskeleton]
Probab=69.58 E-value=36 Score=35.23 Aligned_cols=18 Identities=17% Similarity=0.322 Sum_probs=10.5
Q ss_pred CCCCCcccccchhhhhcc
Q 007579 350 VASTTRHYRSVSMDSFMG 367 (597)
Q Consensus 350 ~~p~~rH~RS~SmDs~~~ 367 (597)
|-|-+|-.-|--.|-.|.
T Consensus 121 icP~rreLYsQcFDElIR 138 (259)
T KOG4001|consen 121 ICPIRRELYSQCFDELIR 138 (259)
T ss_pred cCCCcHHHHHHHHHHHHH
Confidence 666777655555555443
No 307
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=69.46 E-value=38 Score=35.75 Aligned_cols=47 Identities=9% Similarity=0.302 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007579 459 ELEHKVQTLQTEATTLSAQLTLLQRDSVGLTNQNNELKFRLQAMEQQ 505 (597)
Q Consensus 459 ELE~KVq~LQtEN~tLsaQLtlLqre~~~L~aEN~ELK~RLqaLEqQ 505 (597)
+++.+|+.|..+..++..++..++.+...+..+-.+|+.+|..++..
T Consensus 49 ~~q~ei~~L~~qi~~~~~k~~~~~~~i~~~~~eik~l~~eI~~~~~~ 95 (265)
T COG3883 49 NIQNEIESLDNQIEEIQSKIDELQKEIDQSKAEIKKLQKEIAELKEN 95 (265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455555555555555555555555555555555555555555444
No 308
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=69.11 E-value=81 Score=39.10 Aligned_cols=46 Identities=22% Similarity=0.095 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007579 454 MRYISELEHKVQTLQTEATTLSAQLTLLQRDSVGLTNQNNELKFRL 499 (597)
Q Consensus 454 KqYIeELE~KVq~LQtEN~tLsaQLtlLqre~~~L~aEN~ELK~RL 499 (597)
..-+++|+.++..+..+...+..++.-|......+..+..+++.+.
T Consensus 887 e~~L~el~~el~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 932 (1311)
T TIGR00606 887 EEQLVELSTEVQSLIREIKDAKEQDSPLETFLEKDQQEKEELISSK 932 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444444444444444444444444333
No 309
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=69.07 E-value=1.3e+02 Score=35.67 Aligned_cols=43 Identities=21% Similarity=0.326 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007579 458 SELEHKVQTLQTEATTLSAQLTLLQRDSVGLTNQNNELKFRLQ 500 (597)
Q Consensus 458 eELE~KVq~LQtEN~tLsaQLtlLqre~~~L~aEN~ELK~RLq 500 (597)
++++++|..|+.+......++..++.+...|......|..|++
T Consensus 561 ~ei~~rv~~Lk~~~e~Ql~~L~~l~e~~~~l~~~ae~LaeR~e 603 (717)
T PF10168_consen 561 EEIQRRVKLLKQQKEQQLKELQELQEERKSLRESAEKLAERYE 603 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555555444444444444444444444444444443
No 310
>PRK09841 cryptic autophosphorylating protein tyrosine kinase Etk; Provisional
Probab=69.04 E-value=1.5e+02 Score=34.55 Aligned_cols=33 Identities=12% Similarity=0.163 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007579 444 QSAARSKERKMRYISELEHKVQTLQTEATTLSA 476 (597)
Q Consensus 444 ESAaRSReRKKqYIeELE~KVq~LQtEN~tLsa 476 (597)
+.|++..+-=.+.+.+|+.++...+.+....+.
T Consensus 263 ~~a~~a~~fL~~qL~~l~~~L~~aE~~l~~fr~ 295 (726)
T PRK09841 263 AQDSQSLEFLQRQLPEVRSELDQAEEKLNVYRQ 295 (726)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444444444444433
No 311
>PF00170 bZIP_1: bZIP transcription factor cAMP response element binding (CREB) protein signature fos transforming protein signature jun transcription factor signature; InterPro: IPR011616 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotic are proteins that contain a basic region mediating sequence-specific DNA-binding followed by a leucine zipper region (see IPR002158 from INTERPRO) required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2H7H_B 2OQQ_B 1S9K_E 1JNM_A 1JUN_A 1FOS_H 1A02_J 1T2K_C 1CI6_A 1DH3_C ....
Probab=68.97 E-value=40 Score=27.34 Aligned_cols=25 Identities=28% Similarity=0.404 Sum_probs=11.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 007579 478 LTLLQRDSVGLTNQNNELKFRLQAM 502 (597)
Q Consensus 478 LtlLqre~~~L~aEN~ELK~RLqaL 502 (597)
+..|+..+..|..+|..|+.++..|
T Consensus 28 ~~~Le~~~~~L~~en~~L~~~~~~L 52 (64)
T PF00170_consen 28 IEELEEKVEELESENEELKKELEQL 52 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444444
No 312
>PRK13428 F0F1 ATP synthase subunit delta; Provisional
Probab=68.34 E-value=1.9e+02 Score=32.17 Aligned_cols=45 Identities=13% Similarity=0.152 Sum_probs=33.0
Q ss_pred hHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007579 433 PKRAKRILANRQSAARSKERKMRYISELEHKVQTLQTEATTLSAQ 477 (597)
Q Consensus 433 pKR~KRILaNRESAaRSReRKKqYIeELE~KVq~LQtEN~tLsaQ 477 (597)
.+|..+|...=+.|...+.+=.++..+.|.+++..+.|...+..+
T Consensus 31 ~~R~~~I~~~L~eAe~a~~ea~~~~~~~e~~L~~Ak~ea~~Ii~~ 75 (445)
T PRK13428 31 AARQDTVRQQLAESATAADRLAEADQAHTKAVEDAKAEAARVVEE 75 (445)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467777777778888877777777777777777777777665544
No 313
>PF05812 Herpes_BLRF2: Herpesvirus BLRF2 protein; InterPro: IPR008642 This family consists of several herpes virus BLRF2 tegument proteins.; PDB: 2OA5_B 2H3R_D.
Probab=68.34 E-value=7.3 Score=36.63 Aligned_cols=28 Identities=32% Similarity=0.351 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007579 453 KMRYISELEHKVQTLQTEATTLSAQLTL 480 (597)
Q Consensus 453 KKqYIeELE~KVq~LQtEN~tLsaQLtl 480 (597)
|..-++||+.+++.|+.||..|+.+|..
T Consensus 1 k~~t~EeLaaeL~kLqmENk~LKkkl~~ 28 (118)
T PF05812_consen 1 KDMTMEELAAELQKLQMENKALKKKLRQ 28 (118)
T ss_dssp --HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 3456899999999999999999999854
No 314
>PF06810 Phage_GP20: Phage minor structural protein GP20; InterPro: IPR009636 This family consists of several phage minor structural protein Gp20 sequences and prophage sequences of around 180 residues in length. The function of this family is unknown.; GO: 0005198 structural molecule activity
Probab=68.33 E-value=68 Score=30.89 Aligned_cols=60 Identities=18% Similarity=0.209 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007579 458 SELEHKVQTLQTEATTLSA---QLTLLQRDSVGLTNQNNELKFRLQAMEQQAQLRDALNEALT 517 (597)
Q Consensus 458 eELE~KVq~LQtEN~tLsa---QLtlLqre~~~L~aEN~ELK~RLqaLEqQaqLrdALnEaLk 517 (597)
..|+.++.....+...|.. -+..|+.+...|..+|...+...++--.+.++-.++..+|+
T Consensus 30 ~~~k~ql~~~d~~i~~Lk~~~~d~eeLk~~i~~lq~~~~~~~~~~e~~l~~~~~~~ai~~al~ 92 (155)
T PF06810_consen 30 DNLKTQLKEADKQIKDLKKSAKDNEELKKQIEELQAKNKTAKEEYEAKLAQMKKDSAIKSALK 92 (155)
T ss_pred HHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444443 34444445555555555333333333333344444444443
No 315
>KOG0243 consensus Kinesin-like protein [Cytoskeleton]
Probab=68.30 E-value=1.2e+02 Score=37.50 Aligned_cols=50 Identities=22% Similarity=0.248 Sum_probs=32.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007579 450 KERKMRYISELEHKVQTLQTEATTLSAQLTLLQRDSVGLTNQNNELKFRL 499 (597)
Q Consensus 450 ReRKKqYIeELE~KVq~LQtEN~tLsaQLtlLqre~~~L~aEN~ELK~RL 499 (597)
|.-+...|++||.+++.++.+...|.+........+..|..+...|+.+|
T Consensus 443 ~~~~~~~ieele~el~~~~~~l~~~~e~~~~~~~~~~~l~~~~~~~k~~L 492 (1041)
T KOG0243|consen 443 KKEMAEQIEELEEELENLEKQLKDLTELYMNQLEIKELLKEEKEKLKSKL 492 (1041)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Confidence 33466778888888888888777777777644444445555444444444
No 316
>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms. The different members of the Homo sapiens gene family are HOOK1, HOOK2 and HOOK3. Different domains have been identified in the three Homo sapiens HOOK proteins, and it was demonstrated that the highly conserved NH2-domain mediates attachment to microtubules, whereas the central coiled-coil motif mediates homodimerisation and the more divergent C-terminal domains are involved in binding to specific organelles (organelle-binding domains). It has been demonstrated that endogenous HOOK3 binds to Golgi membranes [], whereas both HOOK1 and HOOK2 are localised to discrete but unidentified cellular structures. In mice the Hook1 gene is predominantly expressed in the testis. Hook1 function is necessary for the correct positioning of microtubular structures within the haploid germ cell. Disruption of Hook1 function in mice causes abnormal sperm head shape and fragile attachment of the flagellum to the sperm head [].; GO: 0008017 microtubule binding, 0000226 microtubule cytoskeleton organization, 0005737 cytoplasm; PDB: 1WIX_A.
Probab=68.28 E-value=1.7 Score=49.83 Aligned_cols=52 Identities=23% Similarity=0.401 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHH
Q 007579 452 RKMRYISELEHKVQTLQTEATTLSAQLTLLQRDSVG---LTNQNNELKFRLQAME 503 (597)
Q Consensus 452 RKKqYIeELE~KVq~LQtEN~tLsaQLtlLqre~~~---L~aEN~ELK~RLqaLE 503 (597)
+|.+-+.+|.++|+.|+..|..|..++..|+.+... +..+...||.++..|+
T Consensus 322 kKLed~~~lk~qvk~Lee~N~~l~e~~~~LEeel~~~~~~~~qle~~k~qi~eLe 376 (713)
T PF05622_consen 322 KKLEDLEDLKRQVKELEEDNAVLLETKAMLEEELKKARALKSQLEEYKKQIQELE 376 (713)
T ss_dssp -------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 578889999999999999998888877777765443 3334444444444443
No 317
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=68.24 E-value=97 Score=30.97 Aligned_cols=32 Identities=34% Similarity=0.451 Sum_probs=19.8
Q ss_pred HHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHH
Q 007579 445 SAARSKERKM-RYISELEHKVQTLQTEATTLSA 476 (597)
Q Consensus 445 SAaRSReRKK-qYIeELE~KVq~LQtEN~tLsa 476 (597)
||+.-+.++. .-+.+|..+++.|..||..|+.
T Consensus 8 Sar~~ki~~L~n~l~elq~~l~~l~~ENk~Lk~ 40 (194)
T PF15619_consen 8 SARLHKIKELQNELAELQRKLQELRKENKTLKQ 40 (194)
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555555543 3566777777777777776654
No 318
>PRK00846 hypothetical protein; Provisional
Probab=68.13 E-value=38 Score=29.74 Aligned_cols=42 Identities=17% Similarity=0.084 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007579 458 SELEHKVQTLQTEATTLSAQLTLLQRDSVGLTNQNNELKFRL 499 (597)
Q Consensus 458 eELE~KVq~LQtEN~tLsaQLtlLqre~~~L~aEN~ELK~RL 499 (597)
++||.++..|+...+-....|..|....+....+...|+.+|
T Consensus 9 ~~le~Ri~~LE~rlAfQe~tIe~LN~~v~~qq~~I~~L~~ql 50 (77)
T PRK00846 9 QALEARLVELETRLSFQEQALTELSEALADARLTGARNAELI 50 (77)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456666666666666655555555444433333333333333
No 319
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=68.13 E-value=1.3e+02 Score=37.22 Aligned_cols=14 Identities=36% Similarity=0.695 Sum_probs=9.9
Q ss_pred HHHHHHhccccccc
Q 007579 265 DDLFSAYMNLENID 278 (597)
Q Consensus 265 ddlf~~Ymnl~~~d 278 (597)
|.||.-++||++|+
T Consensus 581 dslyGl~LdL~~I~ 594 (1201)
T PF12128_consen 581 DSLYGLSLDLSAID 594 (1201)
T ss_pred cccceeEeehhhcC
Confidence 45777777777773
No 320
>PF13870 DUF4201: Domain of unknown function (DUF4201)
Probab=68.01 E-value=1.1e+02 Score=29.35 Aligned_cols=50 Identities=14% Similarity=0.098 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccC
Q 007579 483 RDSVGLTNQNNELKFRLQAMEQQAQLRDALNEALTAEVRRLKVATQEMAS 532 (597)
Q Consensus 483 re~~~L~aEN~ELK~RLqaLEqQaqLrdALnEaLkeEVqrLK~a~gEi~~ 532 (597)
.....+..++..++..|...+....-.+.....++.|...++.....+..
T Consensus 84 eKl~~~~~~~~~l~~~l~~~~~~~~~~r~~l~~~k~~r~k~~~~~~~l~~ 133 (177)
T PF13870_consen 84 EKLHFLSEELERLKQELKDREEELAKLREELYRVKKERDKLRKQNKKLRQ 133 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555566665555544444444444555555556555555543
No 321
>PF05483 SCP-1: Synaptonemal complex protein 1 (SCP-1); InterPro: IPR008827 Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase [].; GO: 0007130 synaptonemal complex assembly, 0000795 synaptonemal complex
Probab=67.91 E-value=1.5e+02 Score=35.51 Aligned_cols=92 Identities=24% Similarity=0.307 Sum_probs=61.6
Q ss_pred HHHHhhHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHH
Q 007579 438 RILANRQSAAR-SKERKMRYISELEHKVQTLQTEATTLSAQLTLLQRDSVGLTNQNNELKFRLQAMEQQ----AQLRDAL 512 (597)
Q Consensus 438 RILaNRESAaR-SReRKKqYIeELE~KVq~LQtEN~tLsaQLtlLqre~~~L~aEN~ELK~RLqaLEqQ----aqLrdAL 512 (597)
.++.|.....| .=+-|-.+|++|..+.+.|....+.-.+++..++-....|..|-..++.+...+.+. ..-+...
T Consensus 590 k~lenk~~~LrKqvEnk~K~ieeLqqeNk~LKKk~~aE~kq~~~~eikVn~L~~E~e~~kk~~eE~~~~~~keie~K~~~ 669 (786)
T PF05483_consen 590 KILENKCNNLRKQVENKNKNIEELQQENKALKKKITAESKQSNVYEIKVNKLQEELENLKKKHEEETDKYQKEIESKSIS 669 (786)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhhh
Confidence 35555553333 334567777777777777777777777777777777777777777776666555433 3334456
Q ss_pred HHHHHHHHHHHHHHhcc
Q 007579 513 NEALTAEVRRLKVATQE 529 (597)
Q Consensus 513 nEaLkeEVqrLK~a~gE 529 (597)
.+.|..||+.+|+.+.+
T Consensus 670 e~~L~~EveK~k~~a~E 686 (786)
T PF05483_consen 670 EEELLGEVEKAKLTADE 686 (786)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 77788899999998865
No 322
>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]
Probab=67.81 E-value=71 Score=34.25 Aligned_cols=98 Identities=22% Similarity=0.350 Sum_probs=65.6
Q ss_pred hhccChHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-H
Q 007579 428 IALTDPKRAKRILANRQSAARSKERKMRYISELEHKVQTLQTEATTLSAQLTLLQRDSVGLTNQNNELKFRLQAMEQQ-A 506 (597)
Q Consensus 428 lAl~DpKR~KRILaNRESAaRSReRKKqYIeELE~KVq~LQtEN~tLsaQLtlLqre~~~L~aEN~ELK~RLqaLEqQ-a 506 (597)
+..+|+--.|+. -=+.+.-+-++++ .+|..++..+-.+-..|.+++..+......|..+-.+|..+++.+-.. .
T Consensus 5 ~~~~~E~e~K~~-~lk~~~~e~~ekR----~El~~~~~~~~ekRdeln~kvrE~~e~~~elr~~rdeineev~elK~kR~ 79 (294)
T COG1340 5 LDKLDELELKRK-QLKEEIEELKEKR----DELRKEASELAEKRDELNAKVRELREKAQELREERDEINEEVQELKEKRD 79 (294)
T ss_pred HHhhhHHHHHHH-HHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444443 3344555555555 788888888888888888888888888888888888888888877544 3
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcccc
Q 007579 507 QLRDALNEALTAEVRRLKVATQEMA 531 (597)
Q Consensus 507 qLrdALnEaLkeEVqrLK~a~gEi~ 531 (597)
.+...+.+ |..++..|+....+..
T Consensus 80 ein~kl~e-L~~~~~~l~e~~~~~~ 103 (294)
T COG1340 80 EINAKLQE-LRKEYRELKEKRNEFN 103 (294)
T ss_pred HHHHHHHH-HHHHHHHHHHHhhhhh
Confidence 33333333 6678888888777653
No 323
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=67.79 E-value=42 Score=34.45 Aligned_cols=49 Identities=24% Similarity=0.264 Sum_probs=34.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007579 457 ISELEHKVQTLQTEATTLSAQLTLLQRDSVGLTNQNNELKFRLQAMEQQ 505 (597)
Q Consensus 457 IeELE~KVq~LQtEN~tLsaQLtlLqre~~~L~aEN~ELK~RLqaLEqQ 505 (597)
+..||+.++.-.....+|..||..|+++...|.-++.++..+|+.|.++
T Consensus 42 ~~~le~~~~~~~~~~~~l~~ql~~lq~ev~~LrG~~E~~~~~l~~~~~r 90 (263)
T PRK10803 42 VTQLERISNAHSQLLTQLQQQLSDNQSDIDSLRGQIQENQYQLNQVVER 90 (263)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 3566776666655666777888888888888888888877777776433
No 324
>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]
Probab=67.78 E-value=1.1e+02 Score=37.97 Aligned_cols=87 Identities=16% Similarity=0.236 Sum_probs=49.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHH-----HHHHHHHH
Q 007579 446 AARSKERKMRYISELEHKVQTLQTEATTLSAQLTLLQRDSVGLTNQNNELKFRLQAMEQQ--AQLRD-----ALNEALTA 518 (597)
Q Consensus 446 AaRSReRKKqYIeELE~KVq~LQtEN~tLsaQLtlLqre~~~L~aEN~ELK~RLqaLEqQ--aqLrd-----ALnEaLke 518 (597)
-.......+.-+++||...+..-.+...|...+....-+...+.+++.++|.++.++... ..|++ .+.+.+++
T Consensus 409 ~ke~e~~lq~e~~~~e~~l~~~~e~i~~l~~si~e~~~r~~~~~~~~~~~k~~~del~~~Rk~lWREE~~l~~~i~~~~~ 488 (1200)
T KOG0964|consen 409 TKEQENILQKEIEDLESELKEKLEEIKELESSINETKGRMEEFDAENTELKRELDELQDKRKELWREEKKLRSLIANLEE 488 (1200)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444555556666666666666666666666666666667777777777777666322 22222 23555556
Q ss_pred HHHHHHHHhccccC
Q 007579 519 EVRRLKVATQEMAS 532 (597)
Q Consensus 519 EVqrLK~a~gEi~~ 532 (597)
+|.+-...+....+
T Consensus 489 dl~~~~~~L~~~~~ 502 (1200)
T KOG0964|consen 489 DLSRAEKNLRATMN 502 (1200)
T ss_pred HHHHHHHHHHHhcc
Confidence 66555555544433
No 325
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=67.68 E-value=1.1e+02 Score=38.75 Aligned_cols=55 Identities=24% Similarity=0.188 Sum_probs=30.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHhcc
Q 007579 475 SAQLTLLQRDSVGLTNQNNELKFRLQAME-------QQAQLRDALNEALTAEVRRLKVATQE 529 (597)
Q Consensus 475 saQLtlLqre~~~L~aEN~ELK~RLqaLE-------qQaqLrdALnEaLkeEVqrLK~a~gE 529 (597)
+++.+.|+.+...|..+-++-..+|..|| +++..+.+...-|.+||+.+...+.+
T Consensus 1688 r~rAe~L~~eA~~Ll~~a~~kl~~l~dLe~~y~~~~~~L~~~~aeL~~Le~r~~~vl~~I~~ 1749 (1758)
T KOG0994|consen 1688 RERAEQLRTEAEKLLGQANEKLDRLKDLELEYLRNEQALEDKAAELAGLEKRVESVLDHINE 1749 (1758)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhHHHHHHHHHHHHhh
Confidence 34455555555555555555555555554 34555556666666666666665543
No 326
>PF10779 XhlA: Haemolysin XhlA; InterPro: IPR019715 Haemolysin XhlA is a cell-surface associated haemolysin that lyses the two most prevalent types of insect immune cells (granulocytes and plasmatocytes) as well as rabbit and horse erythrocytes [].
Probab=67.53 E-value=40 Score=28.27 Aligned_cols=51 Identities=10% Similarity=0.275 Sum_probs=35.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007579 458 SELEHKVQTLQTEATTLSAQLTLLQRDSVGLTNQNNELKFRLQAMEQQAQL 508 (597)
Q Consensus 458 eELE~KVq~LQtEN~tLsaQLtlLqre~~~L~aEN~ELK~RLqaLEqQaqL 508 (597)
.+++.++..+++....+...+..|++..+.+..+-..+..+|..++....+
T Consensus 2 ~~i~e~l~~ie~~l~~~~~~i~~lE~~~~~~e~~i~~~~~~l~~I~~n~kW 52 (71)
T PF10779_consen 2 QDIKEKLNRIETKLDNHEERIDKLEKRDAANEKDIKNLNKQLEKIKSNTKW 52 (71)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456667777777777777777777777777777777777777777655443
No 327
>PF05529 Bap31: B-cell receptor-associated protein 31-like ; InterPro: IPR008417 Bap31 is a polytopic integral protein of the endoplasmic reticulum membrane and a substrate of caspase-8. Bap31 is cleaved within its cytosolic domain, generating pro-apoptotic p20 Bap31 [].; GO: 0006886 intracellular protein transport, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=67.51 E-value=45 Score=32.18 Aligned_cols=33 Identities=18% Similarity=0.249 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007579 470 EATTLSAQLTLLQRDSVGLTNQNNELKFRLQAM 502 (597)
Q Consensus 470 EN~tLsaQLtlLqre~~~L~aEN~ELK~RLqaL 502 (597)
+++.+..+++.|+.+......+...||.|.+.+
T Consensus 155 ~~~~~~~ei~~lk~el~~~~~~~~~LkkQ~~~l 187 (192)
T PF05529_consen 155 ENKKLSEEIEKLKKELEKKEKEIEALKKQSEGL 187 (192)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344444444444444444444444444444
No 328
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=67.48 E-value=62 Score=34.85 Aligned_cols=43 Identities=21% Similarity=0.313 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007579 457 ISELEHKVQTLQTEATTLSAQLTLLQRDSVGLTNQNNELKFRL 499 (597)
Q Consensus 457 IeELE~KVq~LQtEN~tLsaQLtlLqre~~~L~aEN~ELK~RL 499 (597)
|.+|+.+++.+..||..|...+...+.....|.+|..+|+.+.
T Consensus 243 ivdlQ~r~k~~~~EnEeL~q~L~~ske~Q~~L~aEL~elqdkY 285 (306)
T PF04849_consen 243 IVDLQQRCKQLAAENEELQQHLQASKESQRQLQAELQELQDKY 285 (306)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444444444444444444444444
No 329
>PF04065 Not3: Not1 N-terminal domain, CCR4-Not complex component ; InterPro: IPR007207 The Ccr4-Not complex (Not1, Not2, Not3, Not4 and Not5) is a global regulator of transcription that affects genes positively and negatively and is thought to regulate transcription factor TFIID []. This domain is the N-terminal region of the Not proteins.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=67.43 E-value=84 Score=32.51 Aligned_cols=101 Identities=23% Similarity=0.330 Sum_probs=62.4
Q ss_pred hcchHHHHhhhccChHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHH
Q 007579 419 IMANEKLAEIALTDPKRAKRILANRQSAARSKERKMRYISELEHKVQTLQTEATTLSAQLT------LLQRDSVGLTNQN 492 (597)
Q Consensus 419 im~~ekLaElAl~DpKR~KRILaNRESAaRSReRKKqYIeELE~KVq~LQtEN~tLsaQLt------lLqre~~~L~aEN 492 (597)
+.+.+.|..-+..||+...| ...+..=+..|++|..+|..++.|...|..... .-+.....|..-.
T Consensus 101 afSkeGL~~~~k~dp~e~ek--------~e~~~wl~~~Id~L~~QiE~~E~E~E~L~~~~kKkk~~~~~~~r~~~l~~~i 172 (233)
T PF04065_consen 101 AFSKEGLMAASKLDPKEKEK--------EEARDWLKDSIDELNRQIEQLEAEIESLSSQKKKKKKDSTKQERIEELESRI 172 (233)
T ss_pred ccchhhhhcccccCcchHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCccCccchhHHHHHHHHH
Confidence 34444444333457766543 355667778899999999999999998887543 3445556666667
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhcc
Q 007579 493 NELKFRLQAMEQQAQLRDALNEAL-TAEVRRLKVATQE 529 (597)
Q Consensus 493 ~ELK~RLqaLEqQaqLrdALnEaL-keEVqrLK~a~gE 529 (597)
...+.++..||.-+.+.+. +.| .++|..|+..+-.
T Consensus 173 erhk~Hi~kLE~lLR~L~N--~~l~~e~V~~ikediey 208 (233)
T PF04065_consen 173 ERHKFHIEKLELLLRLLDN--DELDPEQVEDIKEDIEY 208 (233)
T ss_pred HHHHHHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHH
Confidence 7777777777665555442 111 1345555555544
No 330
>KOG2189 consensus Vacuolar H+-ATPase V0 sector, subunit a [Energy production and conversion]
Probab=67.43 E-value=41 Score=40.25 Aligned_cols=44 Identities=18% Similarity=0.210 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007579 470 EATTLSAQLTLLQRDSVGLTNQNNELKFRLQAMEQQAQLRDALN 513 (597)
Q Consensus 470 EN~tLsaQLtlLqre~~~L~aEN~ELK~RLqaLEqQaqLrdALn 513 (597)
+..+|.++++.|+.+..+|..-+.+||...-.|.+..++++..-
T Consensus 93 ~i~dle~~l~klE~el~eln~n~~~L~~n~~eL~E~~~vl~~t~ 136 (829)
T KOG2189|consen 93 EIIDLEEQLEKLESELRELNANKEALKANYNELLELKYVLEKTD 136 (829)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhh
Confidence 34446666666666666666666666666666655555544443
No 331
>COG1842 PspA Phage shock protein A (IM30), suppresses sigma54-dependent transcription [Transcription / Signal transduction mechanisms]
Probab=67.41 E-value=86 Score=32.07 Aligned_cols=27 Identities=22% Similarity=0.288 Sum_probs=12.9
Q ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHH
Q 007579 439 ILANRQSAARSKERKMRYISELEHKVQ 465 (597)
Q Consensus 439 ILaNRESAaRSReRKKqYIeELE~KVq 465 (597)
++++.....|-..+=+.++++||.+..
T Consensus 50 ~~a~~k~~e~~~~~~~~~~~k~e~~A~ 76 (225)
T COG1842 50 AIARQKQLERKLEEAQARAEKLEEKAE 76 (225)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444455555555554
No 332
>PF13874 Nup54: Nucleoporin complex subunit 54; PDB: 3T97_B.
Probab=67.40 E-value=39 Score=31.65 Aligned_cols=36 Identities=25% Similarity=0.386 Sum_probs=5.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007579 470 EATTLSAQLTLLQRDSVGLTNQNNELKFRLQAMEQQ 505 (597)
Q Consensus 470 EN~tLsaQLtlLqre~~~L~aEN~ELK~RLqaLEqQ 505 (597)
..-.|..++..+...-..|..+..+|+.+|+.|+.+
T Consensus 87 R~l~v~~~~eilr~~g~~l~~eEe~L~~~le~l~~~ 122 (141)
T PF13874_consen 87 RLLRVLRKQEILRNRGYALSPEEEELRKRLEALEAQ 122 (141)
T ss_dssp HHHHHHHHHHHHHH----------------------
T ss_pred HHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHH
Confidence 333334444444444444445555555555554433
No 333
>PRK04325 hypothetical protein; Provisional
Probab=67.38 E-value=38 Score=29.03 Aligned_cols=28 Identities=14% Similarity=0.271 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007579 457 ISELEHKVQTLQTEATTLSAQLTLLQRD 484 (597)
Q Consensus 457 IeELE~KVq~LQtEN~tLsaQLtlLqre 484 (597)
+..+|.++..|+...+-+...|..|...
T Consensus 4 ~~~~e~Ri~~LE~klAfQE~tIe~LN~v 31 (74)
T PRK04325 4 VQEMEDRITELEIQLAFQEDLIDGLNAT 31 (74)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456667666666666666555555443
No 334
>PF01166 TSC22: TSC-22/dip/bun family; InterPro: IPR000580 Several eukaryotic proteins are evolutionary related and are thought to be involved in transcriptional regulation. These proteins are highly similar in a region of about 50 residues that include a conserved leucine-zipper domain most probably involved in homo- or hetero-dimerisation. Proteins containing this signature include: Vertebrate protein TSC-22 [], a transcriptional regulator which seems to act on C-type natriuretic peptide (CNP) promoter. Mammalian protein DIP (DSIP-immunoreactive peptide) [], a protein whose function is not yet known. Drosophila protein bunched [] (gene bun) (also known as shortsighted), a probable transcription factor required for peripheral nervous system morphogenesis, eye development and oogenesis. Caenorhabditis elegans hypothetical protein T18D3.7. ; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1DIP_B.
Probab=67.34 E-value=9.8 Score=32.09 Aligned_cols=26 Identities=31% Similarity=0.359 Sum_probs=11.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007579 472 TTLSAQLTLLQRDSVGLTNQNNELKF 497 (597)
Q Consensus 472 ~tLsaQLtlLqre~~~L~aEN~ELK~ 497 (597)
..|+.+|..|+.++..|..||.-||.
T Consensus 17 evLK~~I~eL~~~n~~Le~EN~~Lk~ 42 (59)
T PF01166_consen 17 EVLKEQIAELEERNSQLEEENNLLKQ 42 (59)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33444444444444444444444443
No 335
>PRK04863 mukB cell division protein MukB; Provisional
Probab=67.34 E-value=72 Score=40.63 Aligned_cols=53 Identities=19% Similarity=0.145 Sum_probs=28.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007579 452 RKMRYISELEHKVQTLQTEATTLSAQLTLLQRDSVGLTNQNNELKFRLQAMEQ 504 (597)
Q Consensus 452 RKKqYIeELE~KVq~LQtEN~tLsaQLtlLqre~~~L~aEN~ELK~RLqaLEq 504 (597)
..+..+.+++.++..++.+...|..++..++.....+..+...+...++.++.
T Consensus 373 eleeeleeleeEleelEeeLeeLqeqLaelqqel~elQ~el~q~qq~i~~Le~ 425 (1486)
T PRK04863 373 EADEQQEENEARAEAAEEEVDELKSQLADYQQALDVQQTRAIQYQQAVQALER 425 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555555555555566666666555555555555555555554444443
No 336
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=67.33 E-value=71 Score=35.92 Aligned_cols=54 Identities=19% Similarity=0.280 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHH
Q 007579 459 ELEHKVQTLQTEATTLSAQLTLLQRDSVGLTN------QNNELKFRLQAMEQQAQLRDAL 512 (597)
Q Consensus 459 ELE~KVq~LQtEN~tLsaQLtlLqre~~~L~a------EN~ELK~RLqaLEqQaqLrdAL 512 (597)
+++++++.++.+...+..++..|+.+...|.. |-.+|+.++..|.....+.+.+
T Consensus 172 ~~~~~L~~l~~~~~~~~~eld~L~~ql~ELe~~~l~~~E~e~L~~e~~~L~n~e~i~~~~ 231 (563)
T TIGR00634 172 KARQQLKDRQQKEQELAQRLDFLQFQLEELEEADLQPGEDEALEAEQQRLSNLEKLRELS 231 (563)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhCCcCCCcHHHHHHHHHHHhCHHHHHHHH
Confidence 33344444444444444444444444444433 2233444544444444444443
No 337
>KOG0249 consensus LAR-interacting protein and related proteins [General function prediction only]
Probab=67.29 E-value=79 Score=37.89 Aligned_cols=39 Identities=21% Similarity=0.237 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007579 486 VGLTNQNNELKFRLQAMEQQAQLRDALNEALTAEVRRLK 524 (597)
Q Consensus 486 ~~L~aEN~ELK~RLqaLEqQaqLrdALnEaLkeEVqrLK 524 (597)
..|..|-..+|.++.++.....-....+|.|+.|+..|+
T Consensus 219 n~L~~e~~s~kk~l~~~~~~k~rl~~d~E~Lr~e~~qL~ 257 (916)
T KOG0249|consen 219 NRLEQELESVKKQLEEMRHDKDKLRTDIEDLRGELDQLR 257 (916)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 344444444555555444443333344555555555555
No 338
>PF03980 Nnf1: Nnf1 ; InterPro: IPR007128 NNF1 is an essential yeast gene required for proper spindle orientation, nucleolar and nuclear envelope structure and mRNA export [].
Probab=67.11 E-value=8.7 Score=33.99 Aligned_cols=32 Identities=19% Similarity=0.309 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007579 452 RKMRYISELEHKVQTLQTEATTLSAQLTLLQR 483 (597)
Q Consensus 452 RKKqYIeELE~KVq~LQtEN~tLsaQLtlLqr 483 (597)
-|+++++.|+.+++.++.+|..|..+|..+++
T Consensus 77 ~~~~~~~~L~~~l~~l~~eN~~L~~~i~~~r~ 108 (109)
T PF03980_consen 77 YKKKEREQLNARLQELEEENEALAEEIQEQRK 108 (109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 45778899999999999999999988876653
No 339
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=66.80 E-value=57 Score=37.00 Aligned_cols=11 Identities=9% Similarity=0.226 Sum_probs=4.5
Q ss_pred HHHHHHHHHhc
Q 007579 518 AEVRRLKVATQ 528 (597)
Q Consensus 518 eEVqrLK~a~g 528 (597)
+.|+.|...+.
T Consensus 435 ~~I~dLqEQlr 445 (493)
T KOG0804|consen 435 EKITDLQEQLR 445 (493)
T ss_pred HHHHHHHHHHH
Confidence 34444444333
No 340
>PRK00295 hypothetical protein; Provisional
Probab=66.66 E-value=42 Score=28.34 Aligned_cols=41 Identities=17% Similarity=0.240 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007579 460 LEHKVQTLQTEATTLSAQLTLLQRDSVGLTNQNNELKFRLQ 500 (597)
Q Consensus 460 LE~KVq~LQtEN~tLsaQLtlLqre~~~L~aEN~ELK~RLq 500 (597)
||.++..|+...+-+...|..|.........+...|+.+|.
T Consensus 3 ~e~Ri~~LE~kla~qE~tie~Ln~~v~~Qq~~I~~L~~ql~ 43 (68)
T PRK00295 3 LEERVTELESRQAFQDDTIQALNDVLVEQQRVIERLQLQMA 43 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56666666666666666555554444333333333333333
No 341
>PRK06569 F0F1 ATP synthase subunit B'; Validated
Probab=66.61 E-value=1.3e+02 Score=29.36 Aligned_cols=45 Identities=16% Similarity=0.122 Sum_probs=35.2
Q ss_pred hHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007579 433 PKRAKRILANRQSAARSKERKMRYISELEHKVQTLQTEATTLSAQ 477 (597)
Q Consensus 433 pKR~KRILaNRESAaRSReRKKqYIeELE~KVq~LQtEN~tLsaQ 477 (597)
.+|..+|..+-..|.+.|..=.+...+.|.+++.-..|...+..+
T Consensus 40 e~R~~~I~~~L~~Ae~~k~eAe~l~a~ye~~L~~Ar~eA~~I~~e 84 (155)
T PRK06569 40 NNRQTNIQDNITQADTLTIEVEKLNKYYNEEIDKTNTEIDRLKKE 84 (155)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467788888888888888887777777788777777777777666
No 342
>PF10267 Tmemb_cc2: Predicted transmembrane and coiled-coil 2 protein; InterPro: IPR019394 This family of transmembrane coiled-coil containing proteins is conserved from worms to humans. Its function is unknown.
Probab=66.58 E-value=54 Score=36.27 Aligned_cols=15 Identities=33% Similarity=0.432 Sum_probs=8.1
Q ss_pred HHHHHHHHHHHHHHH
Q 007579 491 QNNELKFRLQAMEQQ 505 (597)
Q Consensus 491 EN~ELK~RLqaLEqQ 505 (597)
|-..||+.|..+|.+
T Consensus 277 Ei~~LKqeLa~~EEK 291 (395)
T PF10267_consen 277 EIYNLKQELASMEEK 291 (395)
T ss_pred HHHHHHHHHHhHHHH
Confidence 555555555555443
No 343
>PRK12705 hypothetical protein; Provisional
Probab=66.46 E-value=2.1e+02 Score=32.83 Aligned_cols=24 Identities=17% Similarity=0.266 Sum_probs=9.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 007579 460 LEHKVQTLQTEATTLSAQLTLLQR 483 (597)
Q Consensus 460 LE~KVq~LQtEN~tLsaQLtlLqr 483 (597)
|+++...|......|..+-..|..
T Consensus 93 l~~~~~~l~~~~~~l~~~~~~l~~ 116 (508)
T PRK12705 93 LDARAEKLDNLENQLEEREKALSA 116 (508)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444444333333333
No 344
>PF12761 End3: Actin cytoskeleton-regulatory complex protein END3
Probab=66.45 E-value=77 Score=32.21 Aligned_cols=32 Identities=16% Similarity=0.260 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007579 493 NELKFRLQAMEQQAQLRDALNEALTAEVRRLK 524 (597)
Q Consensus 493 ~ELK~RLqaLEqQaqLrdALnEaLkeEVqrLK 524 (597)
+.++.-|+.+++|+..++.....=+.|++.|+
T Consensus 163 ~~v~~Dl~~ie~QV~~Le~~L~~k~~eL~~L~ 194 (195)
T PF12761_consen 163 KSVREDLDTIEEQVDGLESHLSSKKQELQQLR 194 (195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 34455566666666666655555556666664
No 345
>PF04871 Uso1_p115_C: Uso1 / p115 like vesicle tethering protein, C terminal region; InterPro: IPR006955 This domain identifies a group of proteins, which are described as: General vesicular transport factor, Transcytosis associate protein (TAP) and Vesicle docking protein. This myosin-shaped molecule consists of an N-terminal globular head region, a coiled-coil tail which mediates dimerisation, and a short C-terminal acidic region []. p115 tethers COP1 vesicles to the Golgi by binding the coiled coil proteins giantin (on the vesicles) and GM130 (on the Golgi), via its C-terminal acidic region. It is required for intercisternal transport in the Golgi stack. This domain is found in the acidic C-terminal region, which binds to the golgins giantin and GM130. p115 is thought to juxtapose two membranes by binding giantin with one acidic region, and GM130 with another [].; GO: 0008565 protein transporter activity, 0006886 intracellular protein transport, 0005737 cytoplasm, 0016020 membrane
Probab=66.42 E-value=1.2e+02 Score=28.71 Aligned_cols=29 Identities=21% Similarity=0.206 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007579 455 RYISELEHKVQTLQTEATTLSAQLTLLQR 483 (597)
Q Consensus 455 qYIeELE~KVq~LQtEN~tLsaQLtlLqr 483 (597)
.+...|+.....|+.++..|.........
T Consensus 27 ~~~~~l~~~~~~l~~e~~~l~~~~~~~~~ 55 (136)
T PF04871_consen 27 QAESSLEQENKRLEAEEKELKEAEQAAEA 55 (136)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455666666666665555554433333
No 346
>TIGR02209 ftsL_broad cell division protein FtsL. This model represents FtsL, both forms similar to that in E. coli and similar to that in B. subtilis. FtsL is one of the later proteins active in cell division septum formation. FtsL is small, low in complexity, and highly divergent. The scope of this model is broader than that of the Pfam model pfam04999.3 for FtsL, as this one includes FtsL from Bacillus subtilis and related species.
Probab=66.37 E-value=28 Score=29.05 Aligned_cols=35 Identities=17% Similarity=0.303 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007579 470 EATTLSAQLTLLQRDSVGLTNQNNELKFRLQAMEQ 504 (597)
Q Consensus 470 EN~tLsaQLtlLqre~~~L~aEN~ELK~RLqaLEq 504 (597)
....+..++..++++...+..||.+|+.++..|..
T Consensus 25 ~~~~~~~~~~~~~~~~~~l~~en~~L~~ei~~l~~ 59 (85)
T TIGR02209 25 QTRQLNNELQKLQLEIDKLQKEWRDLQLEVAELSR 59 (85)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 34455555666666666666677777776666643
No 347
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.
Probab=66.18 E-value=1.4e+02 Score=32.51 Aligned_cols=71 Identities=14% Similarity=0.182 Sum_probs=47.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007579 456 YISELEHKVQTLQTEATTLSAQLTLLQRDSVGLTNQNNE---LKFRLQAMEQQAQLRDALNEALTAEVRRLKVA 526 (597)
Q Consensus 456 YIeELE~KVq~LQtEN~tLsaQLtlLqre~~~L~aEN~E---LK~RLqaLEqQaqLrdALnEaLkeEVqrLK~a 526 (597)
++.+|+.++..++.+...|..++..|+++...+..+-.. ...++..|+.+......+.+.|.+-.+..+..
T Consensus 311 ~~~~l~~~l~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~el~~L~Re~~~~~~~Y~~l~~r~eea~~~ 384 (498)
T TIGR03007 311 VYQQLQIELAEAEAEIASLEARVAELTARIERLESLLRTIPEVEAELTQLNRDYEVNKSNYEQLLTRRESAEVS 384 (498)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 346677777777777777777777777776666665443 34466777777777777777766555555443
No 348
>PF06810 Phage_GP20: Phage minor structural protein GP20; InterPro: IPR009636 This family consists of several phage minor structural protein Gp20 sequences and prophage sequences of around 180 residues in length. The function of this family is unknown.; GO: 0005198 structural molecule activity
Probab=66.15 E-value=62 Score=31.14 Aligned_cols=32 Identities=19% Similarity=0.345 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHH
Q 007579 454 MRYISELEHKVQTLQT---EATTLSAQLTLLQRDS 485 (597)
Q Consensus 454 KqYIeELE~KVq~LQt---EN~tLsaQLtlLqre~ 485 (597)
+..|.+....+..|+. .|..|..+|+.|+.++
T Consensus 33 k~ql~~~d~~i~~Lk~~~~d~eeLk~~i~~lq~~~ 67 (155)
T PF06810_consen 33 KTQLKEADKQIKDLKKSAKDNEELKKQIEELQAKN 67 (155)
T ss_pred HHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHH
Confidence 3334444444444444 4444555555554443
No 349
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=65.99 E-value=68 Score=40.30 Aligned_cols=61 Identities=20% Similarity=0.193 Sum_probs=32.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Q 007579 470 EATTLSAQLTLLQRDSVGLTNQNNELKFRLQAMEQQAQLRDALNEALTAEVRRLKVATQEM 530 (597)
Q Consensus 470 EN~tLsaQLtlLqre~~~L~aEN~ELK~RLqaLEqQaqLrdALnEaLkeEVqrLK~a~gEi 530 (597)
+.+.|...+.+|+++...+.....++..+|..+.+++-+...-.|.|..|+..|..++.|+
T Consensus 1226 ~i~~l~~~~~~lr~~l~~~~e~L~~~E~~Lsdi~~~~~~a~~~LesLq~~~~~l~~~~keL 1286 (1758)
T KOG0994|consen 1226 DIAQLASATESLRRQLQALTEDLPQEEETLSDITNSLPLAGKDLESLQREFNGLLTTYKEL 1286 (1758)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhccchhhhhHHHHHHHHHHHHHHHHHH
Confidence 3445555555555555555555555555555555554444455555655555555444443
No 350
>PF02388 FemAB: FemAB family; InterPro: IPR003447 The femAB operon codes for two nearly identical approximately 50kDa proteins involved in the formation of the Staphylococcal pentaglycine interpeptide bridge in peptidoglycan []. These proteins are also considered as a factor influencing the level of methicillin resistance [].; GO: 0016755 transferase activity, transferring amino-acyl groups; PDB: 1XE4_A 1NE9_A 3GKR_A 1XIX_A 1P4N_A 1XF8_A 1LRZ_A.
Probab=65.99 E-value=35 Score=36.85 Aligned_cols=26 Identities=27% Similarity=0.519 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007579 455 RYISELEHKVQTLQTEATTLSAQLTL 480 (597)
Q Consensus 455 qYIeELE~KVq~LQtEN~tLsaQLtl 480 (597)
+|++.|+.++..|+.+..+|..++..
T Consensus 242 ~~~~~l~~~~~~~~~~i~~l~~~l~~ 267 (406)
T PF02388_consen 242 EYLESLQEKLEKLEKEIEKLEEKLEK 267 (406)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45566666666666666666665544
No 351
>PRK11519 tyrosine kinase; Provisional
Probab=65.79 E-value=1.1e+02 Score=35.47 Aligned_cols=34 Identities=9% Similarity=0.195 Sum_probs=15.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007579 443 RQSAARSKERKMRYISELEHKVQTLQTEATTLSA 476 (597)
Q Consensus 443 RESAaRSReRKKqYIeELE~KVq~LQtEN~tLsa 476 (597)
++.|++..+.=.+.+.+|+.+++..+.+....+.
T Consensus 262 ~~~a~~a~~fL~~ql~~l~~~L~~aE~~l~~fr~ 295 (719)
T PRK11519 262 SEEASKSLAFLAQQLPEVRSRLDVAENKLNAFRQ 295 (719)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444445555555444444444333
No 352
>PRK01156 chromosome segregation protein; Provisional
Probab=65.74 E-value=1.6e+02 Score=34.57 Aligned_cols=8 Identities=50% Similarity=0.563 Sum_probs=4.9
Q ss_pred hHHHhhhc
Q 007579 413 GAELKKIM 420 (597)
Q Consensus 413 ~~E~KKim 420 (597)
+.++++++
T Consensus 148 ~~~r~~~l 155 (895)
T PRK01156 148 PAQRKKIL 155 (895)
T ss_pred HHHHHHHH
Confidence 45666665
No 353
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Probab=65.72 E-value=88 Score=33.85 Aligned_cols=92 Identities=17% Similarity=0.232 Sum_probs=0.0
Q ss_pred HHhhHHHHHHHHHHHH---------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--
Q 007579 440 LANRQSAARSKERKMR---------------YISELEHKVQTLQTEATTLSAQLTLLQRDSVGLTNQNNELKFRLQAM-- 502 (597)
Q Consensus 440 LaNRESAaRSReRKKq---------------YIeELE~KVq~LQtEN~tLsaQLtlLqre~~~L~aEN~ELK~RLqaL-- 502 (597)
|..|-++.+.+.+... +-..|..-+.....+|..|..++..|++.+.++.-++..|+.++..+
T Consensus 35 Lqer~q~LKkk~~el~~~~~~~~d~~~~~~~~~~~La~lL~~sre~Nk~L~~Ev~~Lrqkl~E~qGD~KlLR~~la~~r~ 114 (319)
T PF09789_consen 35 LQERYQALKKKYRELIQEAAGFGDPSIPPEKENKNLAQLLSESREQNKKLKEEVEELRQKLNEAQGDIKLLREKLARQRV 114 (319)
T ss_pred HHHHHHHHHHHHHHhhhhhcccCCccCCcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHhhhh
Q ss_pred -----------HHHHHHHHHHHHHHHHHHHHHHHHhccccC
Q 007579 503 -----------EQQAQLRDALNEALTAEVRRLKVATQEMAS 532 (597)
Q Consensus 503 -----------EqQaqLrdALnEaLkeEVqrLK~a~gEi~~ 532 (597)
..+..+...+ |.+++.++.|...+.-+.|
T Consensus 115 ~~~~~~~~~~~~ere~lV~qL-Ek~~~q~~qLe~d~qs~lD 154 (319)
T PF09789_consen 115 GDEGIGARHFPHEREDLVEQL-EKLREQIEQLERDLQSLLD 154 (319)
T ss_pred hhccccccccchHHHHHHHHH-HHHHHHHHHHHHHHHHHHH
No 354
>PF14282 FlxA: FlxA-like protein
Probab=65.68 E-value=33 Score=30.90 Aligned_cols=20 Identities=30% Similarity=0.522 Sum_probs=9.6
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 007579 457 ISELEHKVQTLQTEATTLSA 476 (597)
Q Consensus 457 IeELE~KVq~LQtEN~tLsa 476 (597)
|+.|+.+++.|+.+...|..
T Consensus 21 I~~L~~Qi~~Lq~ql~~l~~ 40 (106)
T PF14282_consen 21 IEQLQKQIKQLQEQLQELSQ 40 (106)
T ss_pred HHHHHHHHHHHHHHHHHHHc
Confidence 34455555555444444444
No 355
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=65.65 E-value=1.4e+02 Score=37.63 Aligned_cols=36 Identities=14% Similarity=0.078 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007579 446 AARSKERKMRYISELEHKVQTLQTEATTLSAQLTLL 481 (597)
Q Consensus 446 AaRSReRKKqYIeELE~KVq~LQtEN~tLsaQLtlL 481 (597)
|++.-..-++++++++..+...+.+...+..++..+
T Consensus 873 A~~~~~~a~~~le~ae~~l~~~~~e~~~~~~e~~~a 908 (1353)
T TIGR02680 873 AATRAAEQRARAARAESDAREAAEDAAEARAEAEEA 908 (1353)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333344444444444444444444444443333
No 356
>KOG4603 consensus TBP-1 interacting protein [Signal transduction mechanisms]
Probab=65.49 E-value=66 Score=32.58 Aligned_cols=24 Identities=33% Similarity=0.448 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 007579 459 ELEHKVQTLQTEATTLSAQLTLLQ 482 (597)
Q Consensus 459 ELE~KVq~LQtEN~tLsaQLtlLq 482 (597)
.|+.+|+.|+.++....++|..|.
T Consensus 90 ~l~ek~q~l~~t~s~veaEik~L~ 113 (201)
T KOG4603|consen 90 ALTEKVQSLQQTCSYVEAEIKELS 113 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444443
No 357
>PRK10920 putative uroporphyrinogen III C-methyltransferase; Provisional
Probab=65.45 E-value=1.2e+02 Score=33.60 Aligned_cols=55 Identities=16% Similarity=0.079 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHhc
Q 007579 474 LSAQLTLLQRDSVGLTNQNNELKFRLQAMEQQAQLR--DALNEALTAEVRRLKVATQ 528 (597)
Q Consensus 474 LsaQLtlLqre~~~L~aEN~ELK~RLqaLEqQaqLr--dALnEaLkeEVqrLK~a~g 528 (597)
|..++..+......+..+..+|..+++.|+++..-. ..-++++-+|++.|-..++
T Consensus 90 l~~~~~~~~~~l~~~e~~~~~l~~q~~~Lq~~~~~ls~~~~~dWlLaEaeyLlrlA~ 146 (390)
T PRK10920 90 LEGILKQQAKALDQANRQQAALAKQLDELQQKVATISGSDAKTWLLAQADFLVKLAG 146 (390)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhhHHHHHHHHHHHHHH
Confidence 333333333334444444444444444444332211 1224555566655544443
No 358
>PF15294 Leu_zip: Leucine zipper
Probab=65.34 E-value=26 Score=37.11 Aligned_cols=55 Identities=25% Similarity=0.325 Sum_probs=45.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccC
Q 007579 478 LTLLQRDSVGLTNQNNELKFRLQAMEQQAQLRDALNEALTAEVRRLKVATQEMAS 532 (597)
Q Consensus 478 LtlLqre~~~L~aEN~ELK~RLqaLEqQaqLrdALnEaLkeEVqrLK~a~gEi~~ 532 (597)
..+|..+...|..||..||.||..++.++...-.....|...+..|+...|..-+
T Consensus 127 ~~ll~kEi~rLq~EN~kLk~rl~~le~~at~~l~Ek~kl~~~L~~lq~~~~~~~~ 181 (278)
T PF15294_consen 127 SELLNKEIDRLQEENEKLKERLKSLEKQATSALDEKSKLEAQLKELQDEQGDQKG 181 (278)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 3447888999999999999999999999887777777888888888886665544
No 359
>PF08702 Fib_alpha: Fibrinogen alpha/beta chain family; InterPro: IPR012290 Fibrinogen plays key roles in both blood clotting and platelet aggregation. During blood clot formation, the conversion of soluble fibrinogen to insoluble fibrin is triggered by thrombin, resulting in the polymerisation of fibrin, which forms a soft clot; this is then converted to a hard clot by factor XIIIA, which cross-links fibrin molecules. Platelet aggregation involves the binding of the platelet protein receptor integrin alpha(IIb)-beta(3) to the C-terminal D domain of fibrinogen []. In addition to platelet aggregation, platelet-fibrinogen interaction mediates both adhesion and fibrin clot retraction. Fibrinogen occurs as a dimer, where each monomer is composed of three non-identical chains, alpha, beta and gamma, linked together by several disulphide bonds []. The N-terminals of all six chains come together to form the centre of the molecule (E domain), from which the monomers extend in opposite directions as coiled coils, followed by C-terminal globular domains (D domains). Therefore, the domain composition is: D-coil-E-coil-D. At each end, the C-terminal of the alpha chain extends beyond the D domain as a protuberance that is important for cross-linking the molecule. During clot formation, the N-terminal fragments of the alpha and beta chains (within the E domain) in fibrinogen are cleaved by thrombin, releasing fibrinopeptides A and B, respectively, and producing fibrin. This cleavage results in the exposure of four binding sites on the E domain, each of which can bind to a D domain from different fibrin molecules. The binding of fibrin molecules produces a polymer consisting of a lattice network of fibrins that form a long, branching, flexible fibre [, ]. Fibrin fibres interact with platelets to increase the size of the clot, as well as with several different proteins and cells, thereby promoting the inflammatory response and concentrating the cells required for wound repair at the site of damage. This entry represents the coiled-coil domain and part of the N-terminal E domain found in all three fibrinogen polypeptides, namely the alpha, beta and gamma chains. More information about these proteins can be found at Protein of the Month: Fibrinogen [].; GO: 0005102 receptor binding, 0030674 protein binding, bridging, 0007165 signal transduction, 0030168 platelet activation, 0051258 protein polymerization, 0005577 fibrinogen complex; PDB: 1LWU_D 1N73_D 1M1J_B 1JY2_R 1JY3_R 1RF0_A 2H43_D 1RE4_D 2XNY_D 2HPC_D ....
Probab=65.07 E-value=90 Score=29.89 Aligned_cols=35 Identities=6% Similarity=0.137 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Q 007579 497 FRLQAMEQQAQLRDALNEALTAEVRRLKVATQEMA 531 (597)
Q Consensus 497 ~RLqaLEqQaqLrdALnEaLkeEVqrLK~a~gEi~ 531 (597)
..+-..+++.+.+....+.+..+|++|++++....
T Consensus 97 ~~i~~~~~~I~~Lq~~~~~~~~ki~~Le~~i~~~~ 131 (146)
T PF08702_consen 97 TKIINQPSNIRVLQNILRSNRQKIQRLEQDIDQQE 131 (146)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344445555555666666678888888776543
No 360
>PF01486 K-box: K-box region; InterPro: IPR002487 MADS genes in plants encode key developmental regulators of vegetative and reproductive development. The majority of the plant MADS proteins share a stereotypical MIKC structure. It comprises (from N- to C-terminal) an N-terminal domain, which is, however, present only in a minority of proteins; a MADS domain (see PDOC00302 from PROSITEDOC, IPR002100 from INTERPRO), which is the major determinant of DNA-binding but which also performs dimerisation and accessory factor binding functions; a weakly conserved intervening (I) domain, which constitutes a key molecular determinant for the selective formation of DNA-binding dimers; a keratin-like (K-box) domain, which promotes protein dimerisation; and a C-terminal (C) domain, which is involved in transcriptional activation or in the formation of ternary or quaternary protein complexes. The 80-amino acid K-box domain was originally identified as a region with low but significant similarity to a region of keratin, which is part of the coiled-coil sequence constituting the central rod-shaped domain of keratin [, , ]. The K-box protein-protein interaction domain which mediates heterodimerization of MIKC-type MADS proteins contains several heptad repeats in which the first and the fourth positions are occupied by hydrophobic amino acids suggesting that the K-box domain forms three amphipathic alpha-helices referred to as K1, K2, and K3 [].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=64.57 E-value=16 Score=32.00 Aligned_cols=23 Identities=30% Similarity=0.463 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 007579 456 YISELEHKVQTLQTEATTLSAQL 478 (597)
Q Consensus 456 YIeELE~KVq~LQtEN~tLsaQL 478 (597)
.|..|..++..|+.+|..|..++
T Consensus 76 ~i~~l~~ke~~l~~en~~L~~~~ 98 (100)
T PF01486_consen 76 QIEELKKKERELEEENNQLRQKI 98 (100)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Confidence 34455555555555555555444
No 361
>PF12777 MT: Microtubule-binding stalk of dynein motor; InterPro: IPR024743 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules (D1-6), of which four correspond to the ATP binding sites with P-loop signatures, and two are modules in which the P loop has been lost in evolution. This domain occurs between D4 and D5 and includes the two predicted alpha-helical coiled coil segments that form the stalk supporting the ATP-sensitive microtubule binding component [].; PDB: 3VKH_A 3VKG_A 3ERR_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 2RR7_A.
Probab=64.56 E-value=34 Score=36.14 Aligned_cols=93 Identities=17% Similarity=0.199 Sum_probs=47.7
Q ss_pred ccChHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007579 430 LTDPKRAKRILANRQSAARSKERKMRYISELEHKVQTLQTEATTLSAQLTLLQRDSVGLTNQNNELKFRLQAMEQQAQLR 509 (597)
Q Consensus 430 l~DpKR~KRILaNRESAaRSReRKKqYIeELE~KVq~LQtEN~tLsaQLtlLqre~~~L~aEN~ELK~RLqaLEqQaqLr 509 (597)
.+.|||.+--.++.+ -....+.+.+.+.++..++.+...|..++....++...|..+......+|..-+.=...+
T Consensus 215 ~V~P~~~~l~~a~~~-----l~~~~~~L~~~~~~l~~l~~~l~~l~~~~~~~~~e~~~l~~~~~~~~~kl~rA~~Li~~L 289 (344)
T PF12777_consen 215 EVEPKRQKLEEAEAE-----LEEAEEQLAEKQAELAELEEKLAALQKEYEEAQKEKQELEEEIEETERKLERAEKLISGL 289 (344)
T ss_dssp CCCHHHHHHHHCCCC-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred HHhHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccHHHHHhhh
Confidence 356777665433322 233445555556666666666666666666666666666666666666655443322222
Q ss_pred HHHHHHHHHHHHHHHHHh
Q 007579 510 DALNEALTAEVRRLKVAT 527 (597)
Q Consensus 510 dALnEaLkeEVqrLK~a~ 527 (597)
........+.+..|+...
T Consensus 290 ~~E~~RW~~~~~~l~~~~ 307 (344)
T PF12777_consen 290 SGEKERWSEQIEELEEQL 307 (344)
T ss_dssp HHHHHCCHCHHHHHHHHH
T ss_pred cchhhhHHHHHHHHHHHh
Confidence 223333334444444333
No 362
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=64.54 E-value=1.3e+02 Score=34.77 Aligned_cols=37 Identities=19% Similarity=0.235 Sum_probs=22.5
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007579 441 ANRQSAARSKERKMRYISELEHKVQTLQTEATTLSAQ 477 (597)
Q Consensus 441 aNRESAaRSReRKKqYIeELE~KVq~LQtEN~tLsaQ 477 (597)
..++.+.+..+.-...+.+|+.+++..+.+....+.+
T Consensus 187 ~k~~~~~~a~~~L~~ql~~l~~~l~~aE~~l~~fk~~ 223 (754)
T TIGR01005 187 AKSESNTAAADFLAPEIADLSKQSRDAEAEVAAYRAQ 223 (754)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455566666666666666666666666655555544
No 363
>PF07558 Shugoshin_N: Shugoshin N-terminal coiled-coil region; InterPro: IPR011516 This entry represents the N-terminal domain of Shugoshin (Sgo1) kinetochore-attachment proteins. Shugoshin has a conserved coiled-coil N-terminal domain and a highly conserved C-terminal basic region (IPR011515 from INTERPRO). Shugoshin is a crucial target of Bub1 kinase that plays a central role in chromosome cohesion during mitosis and meiosis divisions by preventing premature dissociation of cohesin complex from centromeres after prophase, when most of cohesin complex dissociates from chromosomes arms [, ]. Shugoshin is thought to act by protecting Rec8 and Rad21 at the centromeres from separase degradation during anaphase I (during meiosis) so that sister chromatids remain tethered []. Shugoshin also acts as a spindle checkpoint component required for sensing tension between sister chromatids during mitosis, its degradation when they separate preventing cell cycle arrest and chromosome loss in anaphase, a time when sister chromatids are no longer under tension. Human shugoshin is diffusible and mediates kinetochore-driven formation of kinetochore-microtubules during bipolar spindle assembly []. Further, the primary role of shugoshin is to ensure bipolar attachment of kinetochores, and its role in protecting cohesion has co-developed to facilitate this process [].; GO: 0045132 meiotic chromosome segregation, 0000775 chromosome, centromeric region, 0005634 nucleus; PDB: 3FGA_D.
Probab=64.35 E-value=7.5 Score=30.68 Aligned_cols=33 Identities=24% Similarity=0.322 Sum_probs=9.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007579 467 LQTEATTLSAQLTLLQRDSVGLTNQNNELKFRL 499 (597)
Q Consensus 467 LQtEN~tLsaQLtlLqre~~~L~aEN~ELK~RL 499 (597)
|-..|..|..++..|+.+...|..||..|+.++
T Consensus 12 laK~Ns~l~~ki~~le~~~s~L~~en~~lR~~~ 44 (46)
T PF07558_consen 12 LAKRNSALSIKIQELENEVSKLLNENVNLRELV 44 (46)
T ss_dssp ------------------HHHHHHHHHHHHHHH
T ss_pred HHhHhHHHHhHHHHHHhHHHHHHHHHHHHHHHh
Confidence 334455566666666666666666666666654
No 364
>PF14817 HAUS5: HAUS augmin-like complex subunit 5
Probab=64.02 E-value=1.2e+02 Score=35.40 Aligned_cols=60 Identities=12% Similarity=0.233 Sum_probs=40.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007579 443 RQSAARSKERKMRYISELEHKVQTLQTEATTLSAQLTLLQRDSVGLTNQNNELKFRLQAM 502 (597)
Q Consensus 443 RESAaRSReRKKqYIeELE~KVq~LQtEN~tLsaQLtlLqre~~~L~aEN~ELK~RLqaL 502 (597)
|+.+.+-|..=++-|++|..++..|..+...+..+++.-+........+-.+++.+-.-|
T Consensus 74 ~e~~~~~r~~L~~everLraei~~l~~~I~~~e~e~~~~e~~~~q~~~~~~~~~~k~~LL 133 (632)
T PF14817_consen 74 RENEARRRRELEKEVERLRAEIQELDKEIESREREVSRQEASREQMLDKISDSRHKQLLL 133 (632)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555555556677888888888888877777777777766666666666666554333
No 365
>COG4467 Regulator of replication initiation timing [Replication, recombination, and repair]
Probab=63.93 E-value=35 Score=32.04 Aligned_cols=43 Identities=21% Similarity=0.301 Sum_probs=29.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007579 460 LEHKVQTLQTEATTLSAQLTLLQRDSVGLTNQNNELKFRLQAM 502 (597)
Q Consensus 460 LE~KVq~LQtEN~tLsaQLtlLqre~~~L~aEN~ELK~RLqaL 502 (597)
|=.+|..|+.....|.+++..|.+....|+.||..|+.....|
T Consensus 6 iFd~v~~le~~l~~l~~el~~lK~~l~~lvEEN~~L~lENe~L 48 (114)
T COG4467 6 IFDQVDNLEEQLGVLLAELGGLKQHLGSLVEENTALRLENEKL 48 (114)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhHHHH
Confidence 4456667777777777777777777777777777666554433
No 366
>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton]
Probab=63.91 E-value=1.3e+02 Score=36.80 Aligned_cols=24 Identities=38% Similarity=0.378 Sum_probs=15.0
Q ss_pred CCCCCCCCCCChhhh----------HhhhcccCc
Q 007579 2 GGDSNEGNGGNTDMM----------QRIQSSFGT 25 (597)
Q Consensus 2 ~~~~~~~~~~~~~~~----------~r~~~~~~~ 25 (597)
|||-|+|--.-.||| ++++++|-+
T Consensus 141 v~D~n~~feltvdmmd~~D~ll~lq~~vF~s~~s 174 (980)
T KOG0980|consen 141 VDDLNNGFELTVDMMDYMDSLLELQQTVFSSMNS 174 (980)
T ss_pred hccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 567777666666665 466666654
No 367
>PLN02678 seryl-tRNA synthetase
Probab=63.77 E-value=47 Score=37.08 Aligned_cols=48 Identities=23% Similarity=0.369 Sum_probs=30.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHH
Q 007579 460 LEHKVQTLQTEATTLSAQLTLLQ---RDSVGLTNQNNELKFRLQAMEQQAQ 507 (597)
Q Consensus 460 LE~KVq~LQtEN~tLsaQLtlLq---re~~~L~aEN~ELK~RLqaLEqQaq 507 (597)
|..+++.|+.+-+.++++|..+. .+...|..+-++|+.+|..|+.++.
T Consensus 45 l~~~~e~lr~erN~~sk~I~~~k~~~~~~~~l~~~~~~Lk~ei~~le~~~~ 95 (448)
T PLN02678 45 RQFELDSLRKEFNKLNKEVAKLKIAKEDATELIAETKELKKEITEKEAEVQ 95 (448)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555566666666666665433 3445677778888888888876643
No 368
>COG4372 Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown]
Probab=63.65 E-value=2.6e+02 Score=31.68 Aligned_cols=99 Identities=19% Similarity=0.256 Sum_probs=61.9
Q ss_pred ChHHHHHHHHh--hHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007579 432 DPKRAKRILAN--RQSAARSKERKM---RYISELEHKVQTLQTEATTLSAQLTLLQRDSVGLTNQNNELKFRLQAMEQQA 506 (597)
Q Consensus 432 DpKR~KRILaN--RESAaRSReRKK---qYIeELE~KVq~LQtEN~tLsaQLtlLqre~~~L~aEN~ELK~RLqaLEqQa 506 (597)
..|+.-++.+| |.-+...|+-|+ +...++.+.+-..+.+...+.++-..|+.+...|.++-..|..++++|.-+-
T Consensus 95 ~~k~~~e~er~~~~~El~~~r~e~~~v~~~~~~a~~n~~kAqQ~lar~t~Q~q~lqtrl~~l~~qr~ql~aq~qsl~a~~ 174 (499)
T COG4372 95 GEKRAAETEREAARSELQKARQEREAVRQELAAARQNLAKAQQELARLTKQAQDLQTRLKTLAEQRRQLEAQAQSLQASQ 174 (499)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35666555433 222333333333 3444455555566677778888888888888888888888888888875433
Q ss_pred HHHHHHHHHHHHHHHHHHHHhccc
Q 007579 507 QLRDALNEALTAEVRRLKVATQEM 530 (597)
Q Consensus 507 qLrdALnEaLkeEVqrLK~a~gEi 530 (597)
+-+.+--+-|+.++.+|+.-...|
T Consensus 175 k~LQ~s~~Qlk~~~~~L~~r~~~i 198 (499)
T COG4372 175 KQLQASATQLKSQVLDLKLRSAQI 198 (499)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 323333566777887777666554
No 369
>CHL00118 atpG ATP synthase CF0 B' subunit; Validated
Probab=63.50 E-value=1.3e+02 Score=28.28 Aligned_cols=96 Identities=15% Similarity=0.111 Sum_probs=57.7
Q ss_pred hHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHH-HHHHHHHHHHHHHHHHHH-HHHH
Q 007579 433 PKRAKRILANRQSAARSKERKMRYISELEHKVQTLQTEATTLSAQLTLL-QRDSVG-LTNQNNELKFRLQAMEQQ-AQLR 509 (597)
Q Consensus 433 pKR~KRILaNRESAaRSReRKKqYIeELE~KVq~LQtEN~tLsaQLtlL-qre~~~-L~aEN~ELK~RLqaLEqQ-aqLr 509 (597)
.+|..+|...-+.|.+.+..=.+...+.|.+++..+.+...+..+...- ++.... +..-..++...++..+.+ ..-+
T Consensus 52 ~~R~~~I~~~l~~Ae~~~~ea~~~~~e~e~~L~~A~~ea~~ii~~A~~~a~~~~~~~~~~A~~ea~~~~~~a~~~i~~ek 131 (156)
T CHL00118 52 DERKEYIRKNLTKASEILAKANELTKQYEQELSKARKEAQLEITQSQKEAKEIVENELKQAQKYIDSLLNEATKQLEAQK 131 (156)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4788889999999999999999999999999999988888776554321 111111 111222222222222222 2333
Q ss_pred HHHHHHHHHHHHHHHHHhc
Q 007579 510 DALNEALTAEVRRLKVATQ 528 (597)
Q Consensus 510 dALnEaLkeEVqrLK~a~g 528 (597)
....+.|+.+|..|...+.
T Consensus 132 ~~a~~~l~~~v~~lA~~ia 150 (156)
T CHL00118 132 EKALKSLEEQVDTLSDQIE 150 (156)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4445556667766665543
No 370
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=63.38 E-value=1.2e+02 Score=38.11 Aligned_cols=89 Identities=19% Similarity=0.280 Sum_probs=57.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007579 445 SAARSKERKMRYISELEHKVQTLQTEATTLSAQLTLLQRDSVGLTNQNNELKFRLQAMEQQAQLRDALNEALTAEVRRLK 524 (597)
Q Consensus 445 SAaRSReRKKqYIeELE~KVq~LQtEN~tLsaQLtlLqre~~~L~aEN~ELK~RLqaLEqQaqLrdALnEaLkeEVqrLK 524 (597)
++..+.++++.-+.+|+.++..+..|.......+..+..+...|...-..+++++.++.........-++.|+ -+.+|+
T Consensus 532 ~~~~~~~e~~~~l~~~k~~l~~~k~e~~~~~k~l~~~~~e~~~~~~~~~~~rqrveE~ks~~~~~~s~~kVl~-al~r~k 610 (1293)
T KOG0996|consen 532 ASSESLKEKKTELDDLKEELPSLKQELKEKEKELPKLRKEERNLKSQLNKLRQRVEEAKSSLSSSRSRNKVLD-ALMRLK 610 (1293)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHH-HHHHHH
Confidence 3444566677777777777777777777777777777777777777777777777777665554445555553 344555
Q ss_pred HHhccccCCCC
Q 007579 525 VATQEMASESD 535 (597)
Q Consensus 525 ~a~gEi~~~~~ 535 (597)
.+ |.|++-.+
T Consensus 611 es-G~i~Gf~G 620 (1293)
T KOG0996|consen 611 ES-GRIPGFYG 620 (1293)
T ss_pred Hc-CCCCcccc
Confidence 43 45555433
No 371
>cd07596 BAR_SNX The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=63.35 E-value=1.3e+02 Score=28.13 Aligned_cols=69 Identities=12% Similarity=0.163 Sum_probs=40.4
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007579 434 KRAKRILANRQSAARSKERKMRYISELEHKVQTLQTEATTLSA-------QLTLLQRDSVGLTNQNNELKFRLQAM 502 (597)
Q Consensus 434 KR~KRILaNRESAaRSReRKKqYIeELE~KVq~LQtEN~tLsa-------QLtlLqre~~~L~aEN~ELK~RLqaL 502 (597)
+...+++.--..+-.-|.++..+++.++..+.....+...|.. ++..|+.++..+..+-..++.++..+
T Consensus 96 ~~y~~~~~s~k~~l~~R~~~~~~~~~~~~~l~~k~~~~~kl~~~~~~~~~ki~~l~~~i~~~e~~~~~~~~~~~~i 171 (218)
T cd07596 96 KEYLRYCQAVKETLDDRADALLTLQSLKKDLASKKAQLEKLKAAPGIKPAKVEELEEELEEAESALEEARKRYEEI 171 (218)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445555555556666677777777777777777666666643 45555555555554444444444433
No 372
>PRK00736 hypothetical protein; Provisional
Probab=63.33 E-value=53 Score=27.76 Aligned_cols=24 Identities=13% Similarity=0.214 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 007579 460 LEHKVQTLQTEATTLSAQLTLLQR 483 (597)
Q Consensus 460 LE~KVq~LQtEN~tLsaQLtlLqr 483 (597)
+|.++..|+...+-+...|..|..
T Consensus 3 ~e~Ri~~LE~klafqe~tie~Ln~ 26 (68)
T PRK00736 3 AEERLTELEIRVAEQEKTIEELSD 26 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 556666666666555555555444
No 373
>KOG4196 consensus bZIP transcription factor MafK [Transcription]
Probab=63.25 E-value=1.1e+02 Score=29.61 Aligned_cols=37 Identities=19% Similarity=0.326 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007579 465 QTLQTEATTLSAQLTLLQRDSVGLTNQNNELKFRLQAM 502 (597)
Q Consensus 465 q~LQtEN~tLsaQLtlLqre~~~L~aEN~ELK~RLqaL 502 (597)
.+|++.--....++.-+++ ..+|+++|.+|..+|+.|
T Consensus 57 RTLKNRGYA~sCR~KRv~Q-k~eLE~~k~~L~qqv~~L 93 (135)
T KOG4196|consen 57 RTLKNRGYAQSCRVKRVQQ-KHELEKEKAELQQQVEKL 93 (135)
T ss_pred HHHhhhhHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHH
Confidence 3444433333333333332 234444444444444444
No 374
>PRK11281 hypothetical protein; Provisional
Probab=62.90 E-value=65 Score=39.86 Aligned_cols=60 Identities=25% Similarity=0.184 Sum_probs=29.1
Q ss_pred cChHH-HHHHHHhhHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007579 431 TDPKR-AKRILANRQSAARSKERKMRYISEL----EHKVQTLQTEATTLSAQLTLLQRDSVGLTN 490 (597)
Q Consensus 431 ~DpKR-~KRILaNRESAaRSReRKKqYIeEL----E~KVq~LQtEN~tLsaQLtlLqre~~~L~a 490 (597)
+-|.| +.|+-.||.-.+.-+.+.+.-...- +.+...|++|...|..++..++++..+-..
T Consensus 156 T~PERAQ~~lsea~~RlqeI~~~L~~~~~~~~~l~~~~~~~l~ae~~~l~~~~~~~~~~l~~~~~ 220 (1113)
T PRK11281 156 TQPERAQAALYANSQRLQQIRNLLKGGKVGGKALRPSQRVLLQAEQALLNAQNDLQRKSLEGNTQ 220 (1113)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHhCCCCCCCcCCHHHHHHHHHHHHHHHHHHHHHHHHHhcchH
Confidence 34444 4455667666555555443311111 233445555555555555555555443333
No 375
>PF15254 CCDC14: Coiled-coil domain-containing protein 14
Probab=62.50 E-value=77 Score=38.09 Aligned_cols=13 Identities=38% Similarity=0.629 Sum_probs=9.2
Q ss_pred HHHHHHHHHhccc
Q 007579 518 AEVRRLKVATQEM 530 (597)
Q Consensus 518 eEVqrLK~a~gEi 530 (597)
+||.||+..+--+
T Consensus 536 aEi~RL~eLtR~L 548 (861)
T PF15254_consen 536 AEIERLRELTRTL 548 (861)
T ss_pred HHHHHHHHHHHHH
Confidence 7888888776543
No 376
>KOG0999 consensus Microtubule-associated protein Bicaudal-D [Intracellular trafficking, secretion, and vesicular transport]
Probab=62.32 E-value=1.1e+02 Score=35.75 Aligned_cols=46 Identities=22% Similarity=0.289 Sum_probs=34.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHH
Q 007579 460 LEHKVQTLQTEATTLSAQLTLLQ---RDSVGLTNQNNELKFRLQAMEQQ 505 (597)
Q Consensus 460 LE~KVq~LQtEN~tLsaQLtlLq---re~~~L~aEN~ELK~RLqaLEqQ 505 (597)
|-.....|+.||-.|..+|..|+ -++.+|..|++.|...+.-|..|
T Consensus 168 llseYSELEEENIsLQKqVs~LR~sQVEyEglkheikRleEe~elln~q 216 (772)
T KOG0999|consen 168 LLSEYSELEEENISLQKQVSNLRQSQVEYEGLKHEIKRLEEETELLNSQ 216 (772)
T ss_pred HHHHHHHHHHhcchHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHH
Confidence 33455677888888888888775 46888888888888877666555
No 377
>KOG4343 consensus bZIP transcription factor ATF6 [Transcription]
Probab=62.30 E-value=31 Score=39.84 Aligned_cols=64 Identities=25% Similarity=0.212 Sum_probs=41.2
Q ss_pred cChHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007579 431 TDPKRAKRILANRQSAARSKERKMRYISELEHKVQTLQTEATTLSAQLTLLQRDSVGLTNQNNELKFRLQAMEQQ 505 (597)
Q Consensus 431 ~DpKR~KRILaNRESAaRSReRKKqYIeELE~KVq~LQtEN~tLsaQLtlLqre~~~L~aEN~ELK~RLqaLEqQ 505 (597)
.|+|-.||-. |+=|-+.-..+-++.+ ++=...|.++|..|..++..|.+||-.||.||..|+.+
T Consensus 275 ~d~kv~krqQ---------RmIKNResA~~SRkKK--KEy~~~Le~rLq~ll~Ene~Lk~ENatLk~qL~~l~~E 338 (655)
T KOG4343|consen 275 SDIKVLKRQQ---------RMIKNRESACQSRKKK--KEYMLGLEARLQALLSENEQLKKENATLKRQLDELVSE 338 (655)
T ss_pred cCHHHHHHHH---------HHHhhHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhc
Confidence 5777777631 3333333334433332 11234578888888888888889999999888888654
No 378
>COG1792 MreC Cell shape-determining protein [Cell envelope biogenesis, outer membrane]
Probab=62.19 E-value=49 Score=34.60 Aligned_cols=43 Identities=33% Similarity=0.275 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Q 007579 484 DSVGLTNQNNELKFRLQAMEQQAQLRDALNEALTAEVRRLKVATQEM 530 (597)
Q Consensus 484 e~~~L~aEN~ELK~RLqaLEqQaqLrdALnEaLkeEVqrLK~a~gEi 530 (597)
++..+..||.+||.++..+++.+. ..+.|++|-++||..++..
T Consensus 67 ~~~~~~~en~~Lk~~l~~~~~~~~----~~~~l~~EN~~Lr~lL~~~ 109 (284)
T COG1792 67 SLKDLALENEELKKELAELEQLLE----EVESLEEENKRLKELLDFK 109 (284)
T ss_pred HhHHHHHHhHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHhCCc
Confidence 344566777777777776655433 3445667777777777643
No 379
>PF01920 Prefoldin_2: Prefoldin subunit; InterPro: IPR002777 Prefoldin (PFD) is a chaperone that interacts exclusively with type II chaperonins, hetero-oligomers lacking an obligate co-chaperonin that are found only in eukaryotes (chaperonin-containing T-complex polypeptide-1 (CCT)) and archaea. Eukaryotic PFD is a multi-subunit complex containing six polypeptides in the molecular mass range of 14-23 kDa. In archaea, on the other hand, PFD is composed of two types of subunits, two alpha and four beta. The six subunits associate to form two back-to-back up-and-down eight-stranded barrels, from which hang six coiled coils. Each subunit contributes one (beta subunits) or two (alpha subunits) beta hairpin turns to the barrels. The coiled coils are formed by the N and C termini of an individual subunit. Overall, this unique arrangement resembles a jellyfish. The eukaryotic PFD hexamer is composed of six different subunits; however, these can be grouped into two alpha-like (PFD3 and -5) and four beta-like (PFD1, -2, -4, and -6) subunits based on amino acid sequence similarity with their archaeal counterparts. Eukaryotic PFD has a six-legged structure similar to that seen in the archaeal homologue [, ]. This family contains the archaeal beta subunit, eukaryotic prefoldin subunits 1, 2, 4 and 6. Eukaryotic PFD has been shown to bind both actin and tubulin co-translationally. The chaperone then delivers the target protein to CCT, interacting with the chaperonin through the tips of the coiled coils. No authentic target proteins of any archaeal PFD have been identified, to date.; GO: 0051082 unfolded protein binding, 0006457 protein folding, 0016272 prefoldin complex; PDB: 2ZDI_B 3AEI_B 2ZQM_A 1FXK_A.
Probab=62.16 E-value=23 Score=30.16 Aligned_cols=26 Identities=38% Similarity=0.622 Sum_probs=10.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007579 457 ISELEHKVQTLQTEATTLSAQLTLLQ 482 (597)
Q Consensus 457 IeELE~KVq~LQtEN~tLsaQLtlLq 482 (597)
+..|+.+++.++.+...|..++..++
T Consensus 64 ~~~L~~~~~~~~~~i~~l~~~~~~l~ 89 (106)
T PF01920_consen 64 IEELEERIEKLEKEIKKLEKQLKYLE 89 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444433333
No 380
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=62.11 E-value=64 Score=38.25 Aligned_cols=19 Identities=26% Similarity=0.352 Sum_probs=10.7
Q ss_pred HHHHHHHHHHHHHHHhccc
Q 007579 512 LNEALTAEVRRLKVATQEM 530 (597)
Q Consensus 512 LnEaLkeEVqrLK~a~gEi 530 (597)
..|.|+-||.||..-+-.+
T Consensus 122 efE~~Khei~rl~Ee~~~l 140 (717)
T PF09730_consen 122 EFEGLKHEIKRLEEEIELL 140 (717)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3556666666666555543
No 381
>KOG4360 consensus Uncharacterized coiled coil protein [Function unknown]
Probab=62.06 E-value=95 Score=35.91 Aligned_cols=22 Identities=23% Similarity=0.255 Sum_probs=8.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 007579 477 QLTLLQRDSVGLTNQNNELKFR 498 (597)
Q Consensus 477 QLtlLqre~~~L~aEN~ELK~R 498 (597)
++..+++++..|+++...++.+
T Consensus 227 el~~q~Ee~skLlsql~d~qkk 248 (596)
T KOG4360|consen 227 ELSRQQEENSKLLSQLVDLQKK 248 (596)
T ss_pred HHHHHHHHHHHHHHHHHhhHHH
Confidence 3333333333333333333333
No 382
>PF09763 Sec3_C: Exocyst complex component Sec3; InterPro: IPR019160 The exocyst complex is composed of 8 subunits: Exoc1, Exoc2, Exoc3, Exoc4, Exoc5, Exoc6, Exoc7 and Exoc8. This entry represents the subunit Exoc1 (Sec3). Sec3 binds to the C-terminal cytoplasmic domain of GLYT1 (glycine transporter protein 1). Sec3 is the exocyst component that is closest to the plasma membrane docking site and it serves as a spatial landmark in the plasma membrane for incoming secretory vesicles. Sec3 is recruited to the sites of polarised membrane growth through its interaction with Rho1p, a small GTP-binding protein.
Probab=62.03 E-value=1.8e+02 Score=33.64 Aligned_cols=43 Identities=14% Similarity=0.021 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007579 460 LEHKVQTLQTEATTLSAQLTLLQRDSVGLTNQNNELKFRLQAM 502 (597)
Q Consensus 460 LE~KVq~LQtEN~tLsaQLtlLqre~~~L~aEN~ELK~RLqaL 502 (597)
+|.+|..|........+++..++...+....+-..++..|+.+
T Consensus 28 s~~~v~~l~~~ld~a~~e~d~le~~l~~y~~~L~~~~~di~~I 70 (701)
T PF09763_consen 28 SEKQVNSLMEYLDEALAECDELESWLSLYDVELNSVRDDIEYI 70 (701)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333333333333333333333333333
No 383
>PF04949 Transcrip_act: Transcriptional activator; InterPro: IPR007033 Golgins are a family of coiled-coil proteins associated with the Golgi apparatus necessary for tethering events in membrane fusion and as structural supports for Golgi cisternae []. This entry represents proteins annotated as RAB6-interacting golgins.
Probab=61.96 E-value=1.7e+02 Score=29.02 Aligned_cols=91 Identities=23% Similarity=0.321 Sum_probs=57.8
Q ss_pred HHHHHHHHhhHHHHHHHH----HH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHH
Q 007579 434 KRAKRILANRQSAARSKE----RK-MRYISELEHKVQTLQTEATTLSAQLTLLQRDSVGLTN----QNNELKFRLQAMEQ 504 (597)
Q Consensus 434 KR~KRILaNRESAaRSRe----RK-KqYIeELE~KVq~LQtEN~tLsaQLtlLqre~~~L~a----EN~ELK~RLqaLEq 504 (597)
.|.|+-++-+.-|+++|. |. ...-++||.-+.=...|...++.+|....+++.-|.. .-+|+|.-|.++..
T Consensus 44 ErkKmeVrekVq~~LgrveEetkrLa~ireeLE~l~dP~RkEv~~vRkkID~vNreLkpl~~~cqKKEkEykealea~nE 123 (159)
T PF04949_consen 44 ERKKMEVREKVQAQLGRVEEETKRLAEIREELEVLADPMRKEVEMVRKKIDSVNRELKPLGQSCQKKEKEYKEALEAFNE 123 (159)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 455666777888888774 22 2233566665556667788888888877777665543 56677888877765
Q ss_pred H----HHHHHHHHHHHHHHHHHHHH
Q 007579 505 Q----AQLRDALNEALTAEVRRLKV 525 (597)
Q Consensus 505 Q----aqLrdALnEaLkeEVqrLK~ 525 (597)
. ++|...|.+.+ .|-++||.
T Consensus 124 knkeK~~Lv~~L~eLv-~eSE~~rm 147 (159)
T PF04949_consen 124 KNKEKAQLVTRLMELV-SESERLRM 147 (159)
T ss_pred HHHHHHHHHHHHHHHH-HHHHHHHH
Confidence 5 44445555544 45566665
No 384
>PF12329 TMF_DNA_bd: TATA element modulatory factor 1 DNA binding; InterPro: IPR022092 This is the middle region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes that contains at its N-terminal section a number of leucine zippers that could potentially form coiled coil structures. The whole proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant [] cells.
Probab=61.88 E-value=1e+02 Score=26.39 Aligned_cols=52 Identities=25% Similarity=0.308 Sum_probs=30.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007579 453 KMRYISELEHKVQTLQTEATTLSAQLTLLQRDSVGLTNQNNELKFRLQAMEQ 504 (597)
Q Consensus 453 KKqYIeELE~KVq~LQtEN~tLsaQLtlLqre~~~L~aEN~ELK~RLqaLEq 504 (597)
|-+.|..|-.+-+.|....-.+...|..|+.....+..+..+|+.++..++.
T Consensus 10 KDe~Ia~L~eEGekLSk~el~~~~~IKKLr~~~~e~e~~~~~l~~~~~~~e~ 61 (74)
T PF12329_consen 10 KDEQIAQLMEEGEKLSKKELKLNNTIKKLRAKIKELEKQIKELKKKLEELEK 61 (74)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455666666666666666666666666666555555566666555555443
No 385
>PRK09174 F0F1 ATP synthase subunit B'; Validated
Probab=61.83 E-value=1.8e+02 Score=29.16 Aligned_cols=45 Identities=20% Similarity=0.299 Sum_probs=37.0
Q ss_pred hHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007579 433 PKRAKRILANRQSAARSKERKMRYISELEHKVQTLQTEATTLSAQ 477 (597)
Q Consensus 433 pKR~KRILaNRESAaRSReRKKqYIeELE~KVq~LQtEN~tLsaQ 477 (597)
.+|..+|...-+.|.+.|..=.+.+.+.|.++..-..+...+..+
T Consensus 83 e~R~~~I~~~L~~Ae~~k~eAe~~~~~ye~~L~~Ar~eA~~Ii~~ 127 (204)
T PRK09174 83 ETRRDRIAQDLDQAARLKQEADAAVAAYEQELAQARAKAHSIAQA 127 (204)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 578888888888898888888888888888888888888777654
No 386
>PF10630 DUF2476: Protein of unknown function (DUF2476); InterPro: IPR018903 This is a family of proteins of unknown function. The proteins in this family are rich in proline residues.
Probab=61.69 E-value=26 Score=36.79 Aligned_cols=28 Identities=32% Similarity=0.450 Sum_probs=16.6
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCccCCC
Q 007579 163 SLLPPSPFNRGNASRIGESLPPRNKHRR 190 (597)
Q Consensus 163 ~~~ppsp~~~~~~~~~~~~LpPrk~HRR 190 (597)
-+|||||....+..+.-..=||+|+-||
T Consensus 228 QPLPPSPsPgPq~~~~rp~rPpcKARRr 255 (256)
T PF10630_consen 228 QPLPPSPSPGPQERPPRPPRPPCKARRR 255 (256)
T ss_pred CCCCcCcCCCccccCCCCCCCcchhhhc
Confidence 4677877655554333333477787776
No 387
>PF15066 CAGE1: Cancer-associated gene protein 1 family
Probab=61.65 E-value=46 Score=37.88 Aligned_cols=66 Identities=27% Similarity=0.387 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHH
Q 007579 460 LEHKVQTLQTEATT----------LSAQLTLLQRDSVGLTNQNNELKFRLQAM-------EQQAQLRDALNEALTAEVRR 522 (597)
Q Consensus 460 LE~KVq~LQtEN~t----------LsaQLtlLqre~~~L~aEN~ELK~RLqaL-------EqQaqLrdALnEaLkeEVqr 522 (597)
||.+|+.||..... |+..|..|..+.-.+.-|.+++...|+.| ..+++-.....+.|.-|+.+
T Consensus 343 Le~kvkeLQ~k~~kQqvfvDiinkLk~niEeLIedKY~viLEKnd~~k~lqnLqe~la~tqk~LqEsr~eKetLqlelkK 422 (527)
T PF15066_consen 343 LEKKVKELQMKITKQQVFVDIINKLKENIEELIEDKYRVILEKNDIEKTLQNLQEALANTQKHLQESRNEKETLQLELKK 422 (527)
T ss_pred HHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHhHhHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Q ss_pred HHH
Q 007579 523 LKV 525 (597)
Q Consensus 523 LK~ 525 (597)
++.
T Consensus 423 ~k~ 425 (527)
T PF15066_consen 423 IKA 425 (527)
T ss_pred Hhh
No 388
>COG1842 PspA Phage shock protein A (IM30), suppresses sigma54-dependent transcription [Transcription / Signal transduction mechanisms]
Probab=61.61 E-value=2e+02 Score=29.56 Aligned_cols=40 Identities=23% Similarity=0.312 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007579 460 LEHKVQTLQTEATTLSAQLTLLQRDSVGLTNQNNELKFRL 499 (597)
Q Consensus 460 LE~KVq~LQtEN~tLsaQLtlLqre~~~L~aEN~ELK~RL 499 (597)
||..+..++.+...+...+..|+.....|.....+|+.++
T Consensus 97 le~~~~~~~~~~~~~~~~~~~l~~~~~~Le~Ki~e~~~~~ 136 (225)
T COG1842 97 LEDLAKALEAELQQAEEQVEKLKKQLAALEQKIAELRAKK 136 (225)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444444444444444433333333333333333333
No 389
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=61.56 E-value=2.2e+02 Score=33.98 Aligned_cols=20 Identities=25% Similarity=0.391 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHHHHhccccC
Q 007579 513 NEALTAEVRRLKVATQEMAS 532 (597)
Q Consensus 513 nEaLkeEVqrLK~a~gEi~~ 532 (597)
+..|.+|+.+|+..+-.+..
T Consensus 603 ~~rleEE~e~L~~kle~~k~ 622 (698)
T KOG0978|consen 603 RKRLEEELERLKRKLERLKK 622 (698)
T ss_pred HHHHHHHHHHHHHHHHHhcc
Confidence 45666777777777765543
No 390
>KOG0982 consensus Centrosomal protein Nuf [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=61.23 E-value=2.3e+02 Score=32.39 Aligned_cols=52 Identities=21% Similarity=0.264 Sum_probs=34.1
Q ss_pred hHHHHHHHH--hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007579 433 PKRAKRILA--NRQSAARSKERKMRYISELEHKVQTLQTEATTLSAQLTLLQRDS 485 (597)
Q Consensus 433 pKR~KRILa--NRESAaRSReRKKqYIeELE~KVq~LQtEN~tLsaQLtlLqre~ 485 (597)
.||.|-|+. -|++ .--++.=+..+..||.++..|....+.|+..+..|..+.
T Consensus 281 ~rrhrEil~k~eRea-sle~Enlqmr~qqleeentelRs~~arlksl~dklaee~ 334 (502)
T KOG0982|consen 281 ERRHREILIKKEREA-SLEKENLQMRDQQLEEENTELRSLIARLKSLADKLAEED 334 (502)
T ss_pred HHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 355555543 3443 344666677778888888888888888777777666554
No 391
>PF04340 DUF484: Protein of unknown function, DUF484; InterPro: IPR007435 This family consists of several proteins of uncharacterised function.; PDB: 3E98_B.
Probab=61.19 E-value=63 Score=31.96 Aligned_cols=51 Identities=20% Similarity=0.208 Sum_probs=38.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007579 456 YISELEHKVQTLQTEATTLSAQLTLLQRDSVGLTNQNNELKFRLQAMEQQAQLRD 510 (597)
Q Consensus 456 YIeELE~KVq~LQtEN~tLsaQLtlLqre~~~L~aEN~ELK~RLqaLEqQaqLrd 510 (597)
=|+=.|++++.|..+|..|+.+++.|.. ...+|..+-.++..++-++.-.+
T Consensus 41 avSL~erQ~~~LR~~~~~L~~~l~~Li~----~Ar~Ne~~~~~~~~l~l~LL~a~ 91 (225)
T PF04340_consen 41 AVSLVERQLERLRERNRQLEEQLEELIE----NARENEAIFQRLHRLVLALLAAR 91 (225)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHC--
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHhcCC
Confidence 4677788999999999999999877654 56788888888888876644333
No 392
>PF07798 DUF1640: Protein of unknown function (DUF1640); InterPro: IPR024461 This family consists of uncharacterised proteins.
Probab=61.17 E-value=1.6e+02 Score=28.43 Aligned_cols=11 Identities=36% Similarity=0.474 Sum_probs=5.0
Q ss_pred HHHHHHHHHHH
Q 007579 515 ALTAEVRRLKV 525 (597)
Q Consensus 515 aLkeEVqrLK~ 525 (597)
.|+.+|+.+|.
T Consensus 142 ~lr~~iE~~K~ 152 (177)
T PF07798_consen 142 NLRTEIESLKW 152 (177)
T ss_pred HHHHHHHHHHH
Confidence 34444444443
No 393
>PF09787 Golgin_A5: Golgin subfamily A member 5; InterPro: IPR019177 This entry represents a family of proteins involved in maintaining Golgi structure. They stimulate the formation of Golgi stacks and ribbons, and are involved in intra-Golgi retrograde transport. Two main interactions have been characterised: one with RAB1A that has been activated by GTP-binding and another with isoform CASP of CUTL1 [].
Probab=61.09 E-value=1.1e+02 Score=34.19 Aligned_cols=12 Identities=17% Similarity=0.423 Sum_probs=5.9
Q ss_pred HHHHHHHHHhcc
Q 007579 518 AEVRRLKVATQE 529 (597)
Q Consensus 518 eEVqrLK~a~gE 529 (597)
.|+++|+..+..
T Consensus 369 ~E~q~lr~~l~~ 380 (511)
T PF09787_consen 369 SEIQKLRNQLSA 380 (511)
T ss_pred HHHHHHHHHHHH
Confidence 355555554443
No 394
>COG3879 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=60.94 E-value=66 Score=33.73 Aligned_cols=19 Identities=16% Similarity=0.335 Sum_probs=13.4
Q ss_pred HHHHHHHHHHHHhccccCC
Q 007579 515 ALTAEVRRLKVATQEMASE 533 (597)
Q Consensus 515 aLkeEVqrLK~a~gEi~~~ 533 (597)
++..+++.|+..+|.++-.
T Consensus 93 ~ie~~l~~l~~~aG~v~V~ 111 (247)
T COG3879 93 ALEDRLEKLRMLAGSVPVT 111 (247)
T ss_pred HHHHHHHHHHHHhccCCCc
Confidence 3444788899999876544
No 395
>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.
Probab=60.84 E-value=64 Score=37.36 Aligned_cols=27 Identities=26% Similarity=0.290 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHhccccCC
Q 007579 507 QLRDALNEALTAEVRRLKVATQEMASE 533 (597)
Q Consensus 507 qLrdALnEaLkeEVqrLK~a~gEi~~~ 533 (597)
.++....++|++|+++|+..+..+...
T Consensus 562 ~~k~~~l~~L~~En~~L~~~l~~le~~ 588 (722)
T PF05557_consen 562 QIKKSTLEALQAENEDLLARLRSLEEG 588 (722)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcccC
Confidence 344567999999999999888655443
No 396
>PRK14872 rod shape-determining protein MreC; Provisional
Probab=60.80 E-value=61 Score=35.17 Aligned_cols=25 Identities=24% Similarity=0.310 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 007579 483 RDSVGLTNQNNELKFRLQAMEQQAQ 507 (597)
Q Consensus 483 re~~~L~aEN~ELK~RLqaLEqQaq 507 (597)
+.+..|..||.+||.++..|+.++.
T Consensus 57 ~~y~~L~~EN~~Lk~Ena~L~~~l~ 81 (337)
T PRK14872 57 SHALVLETENFLLKERIALLEERLK 81 (337)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555566666666555544433
No 397
>PF05377 FlaC_arch: Flagella accessory protein C (FlaC); InterPro: IPR008039 Although archaeal flagella appear superficially similar to those of bacteria, they are quite distinct []. In several archaea, the flagellin genes are followed immediately by the flagellar accessory genes flaCDEFGHIJ. The gene products may have a role in translocation, secretion, or assembly of the flagellum. FlaC is a protein whose exact role is unknown but it has been shown to be membrane-associated (by immuno-blotting fractionated cells) [].
Probab=60.64 E-value=53 Score=27.40 Aligned_cols=32 Identities=16% Similarity=0.376 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007579 457 ISELEHKVQTLQTEATTLSAQLTLLQRDSVGL 488 (597)
Q Consensus 457 IeELE~KVq~LQtEN~tLsaQLtlLqre~~~L 488 (597)
+..|+..+..++.||..|+..+..+++....|
T Consensus 9 ~~~~~~~i~tvk~en~~i~~~ve~i~envk~l 40 (55)
T PF05377_consen 9 LPRIESSINTVKKENEEISESVEKIEENVKDL 40 (55)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667777777777777777777776655443
No 398
>KOG1265 consensus Phospholipase C [Lipid transport and metabolism]
Probab=60.53 E-value=1.2e+02 Score=37.33 Aligned_cols=71 Identities=27% Similarity=0.294 Sum_probs=51.4
Q ss_pred ChHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHH
Q 007579 432 DPKRAKRILANRQSAARSKERKMRYISELEHKVQTLQTEATTLSAQL-----TLLQRDSVGLTNQNNELKFRLQAM 502 (597)
Q Consensus 432 DpKR~KRILaNRESAaRSReRKKqYIeELE~KVq~LQtEN~tLsaQL-----tlLqre~~~L~aEN~ELK~RLqaL 502 (597)
|-+..-|-|.||+--.-+.++..+|-+++|.+-+.|......|..=+ ..+++-...+..|-+|||.+++.-
T Consensus 1026 d~~~r~~el~~rq~~el~~~~~~~~~~e~e~k~~hl~~~~~~l~kl~~eaq~~Q~k~LK~~~e~e~kElk~~l~kk 1101 (1189)
T KOG1265|consen 1026 DNAGRVRELVNRQTQELLEMRREQYEEEFELKEEHLKEQISLLRKLLSEAQTNQTKALKESLEKETKELKKKLDKK 1101 (1189)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344456788888888899999999999999888888777765433 334444566777888888877654
No 399
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=60.50 E-value=75 Score=36.27 Aligned_cols=24 Identities=21% Similarity=0.354 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 007579 456 YISELEHKVQTLQTEATTLSAQLT 479 (597)
Q Consensus 456 YIeELE~KVq~LQtEN~tLsaQLt 479 (597)
-++.||.++..|+.+...|.+++.
T Consensus 564 ~~~~~e~~i~~le~~~~~l~~~l~ 587 (638)
T PRK10636 564 EIARLEKEMEKLNAQLAQAEEKLG 587 (638)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhc
Confidence 455677777777777666666664
No 400
>PF14645 Chibby: Chibby family
Probab=60.43 E-value=27 Score=32.40 Aligned_cols=36 Identities=25% Similarity=0.250 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007579 460 LEHKVQTLQTEATTLSAQLTLLQRDSVGLTNQNNEL 495 (597)
Q Consensus 460 LE~KVq~LQtEN~tLsaQLtlLqre~~~L~aEN~EL 495 (597)
|.++.+.|+.||+.|+-++..|---.+..++|..-+
T Consensus 76 l~~~n~~L~EENN~Lklk~elLlDMLtettae~~l~ 111 (116)
T PF14645_consen 76 LRKENQQLEEENNLLKLKIELLLDMLTETTAEAHLL 111 (116)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445566677777777777766655444444443333
No 401
>PF09728 Taxilin: Myosin-like coiled-coil protein; InterPro: IPR019132 Taxilin contains an extraordinarily long coiled-coil domain in its C-terminal half and is ubiquitously expressed. It is a novel binding partner of several syntaxin family members and is possibly involved in Ca(2+)-dependent exocytosis in neuroendocrine cells []. Gamma-taxilin, described as leucine zipper protein Factor Inhibiting ATF4-mediated Transcription (FIAT), localises to the nucleus in osteoblasts and dimerises with ATF4 to form inactive dimers, thus inhibiting ATF4-mediated transcription [].
Probab=60.37 E-value=2.4e+02 Score=30.06 Aligned_cols=76 Identities=20% Similarity=0.258 Sum_probs=50.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 007579 454 MRYISELEHKVQTLQTEATTLSAQLTLLQRDSVGLTNQNNELKFRLQAM-EQQAQLRDALNEALTAEVRRLKVATQE 529 (597)
Q Consensus 454 KqYIeELE~KVq~LQtEN~tLsaQLtlLqre~~~L~aEN~ELK~RLqaL-EqQaqLrdALnEaLkeEVqrLK~a~gE 529 (597)
++....|..+...++.|..........|+.-|..|..+|+.|+.....+ ......|..+.+.+..-|..+...+.+
T Consensus 49 ~Kk~~~l~kek~~l~~E~~k~~~~k~KLE~LCRELQk~Nk~lkeE~~~~~~eee~kR~el~~kFq~~L~dIq~~~ee 125 (309)
T PF09728_consen 49 QKKQEQLQKEKDQLQSELSKAILAKSKLESLCRELQKQNKKLKEESKRRAREEEEKRKELSEKFQATLKDIQAQMEE 125 (309)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3455677777888888888888888888888999999999998765433 333444444444444444444444433
No 402
>PF14915 CCDC144C: CCDC144C protein coiled-coil region
Probab=60.29 E-value=1.1e+02 Score=33.16 Aligned_cols=70 Identities=23% Similarity=0.236 Sum_probs=49.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 007579 458 SELEHKVQTLQTEATTLSAQLTLLQRDSVGLTNQNNELKFRL--------QAMEQQAQLRDALNEALTAEVRRLKVAT 527 (597)
Q Consensus 458 eELE~KVq~LQtEN~tLsaQLtlLqre~~~L~aEN~ELK~RL--------qaLEqQaqLrdALnEaLkeEVqrLK~a~ 527 (597)
+.||.++.+|+.||.-|..||..+...-..-..--..+..+. ..-+.+..+.+.-|..|..|+..||.-+
T Consensus 217 es~eERL~QlqsEN~LLrQQLddA~~K~~~kek~ViniQ~~f~d~~~~L~ae~ekq~lllEErNKeL~ne~n~LkEr~ 294 (305)
T PF14915_consen 217 ESLEERLSQLQSENMLLRQQLDDAHNKADNKEKTVINIQDQFQDIVKKLQAESEKQVLLLEERNKELINECNHLKERL 294 (305)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 567889999999999999999988765433222122222223 3446677778888999999999998754
No 403
>PF04642 DUF601: Protein of unknown function, DUF601; InterPro: IPR006736 This family consists of several uncharacterised plant proteins which share a conserved region.
Probab=60.28 E-value=43 Score=35.58 Aligned_cols=48 Identities=25% Similarity=0.248 Sum_probs=34.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHH
Q 007579 456 YISELEHKVQTLQTEATTLSAQLTLLQ-------RDSVGLTNQNNELKFRLQAME 503 (597)
Q Consensus 456 YIeELE~KVq~LQtEN~tLsaQLtlLq-------re~~~L~aEN~ELK~RLqaLE 503 (597)
.+.++|.+|+.|+--|..|.++++.=. ..-+.+.+|.+.++.+|..|+
T Consensus 218 Rmk~aEaqvneLEvsN~DLsaKLe~gknaY~~~ieke~q~raeL~acEEkl~kme 272 (311)
T PF04642_consen 218 RMKEAEAQVNELEVSNIDLSAKLEPGKNAYLAAIEKENQARAELNACEEKLKKME 272 (311)
T ss_pred HHHHHHhhhhheecccHHHHHhhcCCcchHHHHHhhHHHHHHHHHHHHHHHhccc
Confidence 467899999999999999999994332 333455666666666666664
No 404
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]
Probab=60.20 E-value=1.6e+02 Score=36.13 Aligned_cols=14 Identities=21% Similarity=0.323 Sum_probs=7.7
Q ss_pred hHHHHHHhcccccc
Q 007579 264 VDDLFSAYMNLENI 277 (597)
Q Consensus 264 ~ddlf~~Ymnl~~~ 277 (597)
.+|+|.-+-+|.|-
T Consensus 161 ~~eIf~~~~~L~nk 174 (1265)
T KOG0976|consen 161 AHDIFMIGEDLHDK 174 (1265)
T ss_pred hHHHHHHHHHHhhh
Confidence 35566665555543
No 405
>PF04899 MbeD_MobD: MbeD/MobD like ; InterPro: IPR006983 The MbeD and MobD proteins are plasmid encoded, and are involved in the plasmid mobilisation and transfer in the presence of conjugative plasmids [].
Probab=60.15 E-value=1.1e+02 Score=26.35 Aligned_cols=34 Identities=21% Similarity=0.171 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007579 474 LSAQLTLLQRDSVGLTNQNNELKFRLQAMEQQAQ 507 (597)
Q Consensus 474 LsaQLtlLqre~~~L~aEN~ELK~RLqaLEqQaq 507 (597)
+....+.|+........+|..|+.++..|.+++.
T Consensus 26 Wq~sy~~Lq~~~~~t~~~~a~L~~qv~~Ls~qv~ 59 (70)
T PF04899_consen 26 WQSSYADLQHMFEQTSQENAALSEQVNNLSQQVQ 59 (70)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444455555555555555544
No 406
>PF06008 Laminin_I: Laminin Domain I; InterPro: IPR009254 Laminins are glycoproteins that are major constituents of the basement membrane of cells. Laminins are trimeric molecules; laminin-1 is an alpha1 beta1 gamma1 trimer. It has been suggested that the domains I and II from laminin A, B1 and B2 may come together to form a triple helical coiled-coil structure []. Binding to cells via a high affinity receptor, laminin is thought to mediate the attachment, migration and organisation of cells into tissues during embryonic development by interacting with other extracellular matrix components.; GO: 0005102 receptor binding, 0030155 regulation of cell adhesion, 0030334 regulation of cell migration, 0045995 regulation of embryonic development, 0005606 laminin-1 complex
Probab=60.12 E-value=1.1e+02 Score=30.91 Aligned_cols=51 Identities=22% Similarity=0.343 Sum_probs=37.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007579 455 RYISELEHKVQTLQTEATTLSAQLTLLQRDSVGLTNQNNELKFRLQAMEQQ 505 (597)
Q Consensus 455 qYIeELE~KVq~LQtEN~tLsaQLtlLqre~~~L~aEN~ELK~RLqaLEqQ 505 (597)
..+..|+..+..|+.+.....+....+......+...-..|...+..+...
T Consensus 52 ~~l~~L~~d~~~L~~k~~~~~~~~~~l~~~t~~t~~~a~~L~~~i~~l~~~ 102 (264)
T PF06008_consen 52 KELESLEQDVENLQEKATKVSRKAQQLNNNTERTLQRAQDLEQFIQNLQDN 102 (264)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 347888888888888888877777777777777777767766666666433
No 407
>PF10046 BLOC1_2: Biogenesis of lysosome-related organelles complex-1 subunit 2 ; InterPro: IPR019269 This entry represents a family of proteins that play a role in cellular proliferation, as well as in the biogenesis of specialised organelles of the endosomal-lysosomal system [].
Probab=59.74 E-value=88 Score=27.80 Aligned_cols=15 Identities=20% Similarity=0.235 Sum_probs=5.8
Q ss_pred HHHHHHHHHHHHHHH
Q 007579 498 RLQAMEQQAQLRDAL 512 (597)
Q Consensus 498 RLqaLEqQaqLrdAL 512 (597)
++..||+-+...|..
T Consensus 74 ~V~~LE~~v~~LD~y 88 (99)
T PF10046_consen 74 QVTELEQTVYELDEY 88 (99)
T ss_pred HHHHHHHHHHHHHHH
Confidence 333443333333333
No 408
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=59.58 E-value=1.2e+02 Score=35.24 Aligned_cols=35 Identities=9% Similarity=0.200 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007579 468 QTEATTLSAQLTLLQRDSVGLTNQNNELKFRLQAM 502 (597)
Q Consensus 468 QtEN~tLsaQLtlLqre~~~L~aEN~ELK~RLqaL 502 (597)
+.....+...|+.|..++.....|+..|+.....|
T Consensus 286 ~~k~~~~~~~l~~l~~Eie~kEeE~e~lq~~~d~L 320 (581)
T KOG0995|consen 286 KSKKQHMEKKLEMLKSEIEEKEEEIEKLQKENDEL 320 (581)
T ss_pred HhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333344444444444444444444444444444
No 409
>PF05278 PEARLI-4: Arabidopsis phospholipase-like protein (PEARLI 4); InterPro: IPR007942 This family contains several phospholipase-like proteins from Arabidopsis thaliana and other members of the Streptophyta which are homologous to PEARLI 4.
Probab=59.54 E-value=1.4e+02 Score=31.67 Aligned_cols=29 Identities=21% Similarity=0.321 Sum_probs=11.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007579 474 LSAQLTLLQRDSVGLTNQNNELKFRLQAM 502 (597)
Q Consensus 474 LsaQLtlLqre~~~L~aEN~ELK~RLqaL 502 (597)
+..++...+.+...+...-.+.+.||..|
T Consensus 212 ~~EeL~~~Eke~~e~~~~i~e~~~rl~~l 240 (269)
T PF05278_consen 212 LEEELKQKEKEVKEIKERITEMKGRLGEL 240 (269)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333334444444444
No 410
>PLN02320 seryl-tRNA synthetase
Probab=59.50 E-value=83 Score=35.84 Aligned_cols=46 Identities=17% Similarity=0.307 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHH
Q 007579 461 EHKVQTLQTEATTLSAQLTLL--QRDSVGLTNQNNELKFRLQAMEQQA 506 (597)
Q Consensus 461 E~KVq~LQtEN~tLsaQLtlL--qre~~~L~aEN~ELK~RLqaLEqQa 506 (597)
..+++.|+.|-+.+++++... ..+...|..+-++||.+|..||.++
T Consensus 106 ~~~~~~lr~ern~~sk~i~~~~~~~~~~~l~~~~k~lk~~i~~le~~~ 153 (502)
T PLN02320 106 QKEVERLRAERNAVANKMKGKLEPSERQALVEEGKNLKEGLVTLEEDL 153 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444555555555554431 1124456666666666666666553
No 411
>PF07407 Seadorna_VP6: Seadornavirus VP6 protein; InterPro: IPR009982 This family consists of several VP6 proteins from the Banna virus as well as a related protein VP5 from the Kadipiro virus. Members of this family are typically of around 420 residues in length. The function of this family is unknown.
Probab=59.46 E-value=44 Score=36.66 Aligned_cols=21 Identities=19% Similarity=0.164 Sum_probs=7.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 007579 468 QTEATTLSAQLTLLQRDSVGL 488 (597)
Q Consensus 468 QtEN~tLsaQLtlLqre~~~L 488 (597)
+.||..|+++++.|..+.+.|
T Consensus 38 r~EN~~LKkEN~~Lk~eVerL 58 (420)
T PF07407_consen 38 RMENHSLKKENNDLKIEVERL 58 (420)
T ss_pred HHHhHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333
No 412
>COG1382 GimC Prefoldin, chaperonin cofactor [Posttranslational modification, protein turnover, chaperones]
Probab=59.23 E-value=40 Score=31.80 Aligned_cols=27 Identities=33% Similarity=0.370 Sum_probs=11.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007579 452 RKMRYISELEHKVQTLQTEATTLSAQL 478 (597)
Q Consensus 452 RKKqYIeELE~KVq~LQtEN~tLsaQL 478 (597)
.|..-+.+|+.++..|+.+..+|..+.
T Consensus 67 ~k~~~~~eL~er~E~Le~ri~tLekQe 93 (119)
T COG1382 67 SKEEAVDELEERKETLELRIKTLEKQE 93 (119)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444444433
No 413
>KOG4436 consensus Predicted GTPase activator NB4S/EVI5 (contains TBC domain)/Calmodulin-binding protein Pollux (contains PTB and TBC domains) [General function prediction only]
Probab=59.02 E-value=11 Score=44.90 Aligned_cols=74 Identities=30% Similarity=0.302 Sum_probs=38.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 007579 455 RYISELEHKVQTLQTEATTLSA-----QLTLLQRDSVGLTNQNNELKFRLQAMEQQAQLRDALNEALTAEVRRLKVATQ 528 (597)
Q Consensus 455 qYIeELE~KVq~LQtEN~tLsa-----QLtlLqre~~~L~aEN~ELK~RLqaLEqQaqLrdALnEaLkeEVqrLK~a~g 528 (597)
+||.+++.++..|+.|...++. ++..|+..+..+..+|-.|-.+++..+...+...+..+-|-++-.+|+.++-
T Consensus 829 kql~eykvey~vLq~El~~~~~~~~~~~~~~lE~~~s~~~~q~~~ll~qlq~~~~~iq~l~~~v~~l~~~e~~~k~~l~ 907 (948)
T KOG4436|consen 829 KQLAEYKVEYHVLQEELTTSSHLEDLNRIAKLETTNSSLQAQNTDLLEQLQVAELTIQTLERYVEQLLEHENKLKRALQ 907 (948)
T ss_pred HHHHHHHHHHHHHHHHHHhccchhhcccccccccchhhhHhhhhhhhhhhccccchhhHHHHHhhhhhcchHHHHHHHh
Confidence 5777777777788877777666 2333444444444444444444444444444444444433333334444443
No 414
>PF10234 Cluap1: Clusterin-associated protein-1; InterPro: IPR019366 This protein of 413 amino acids contains a central coiled-coil domain, possibly the region that binds to clusterin. Cluap1 expression is highest in the nucleus and gradually increases during late S to G2/M phases of the cell cycle and returns to the basal level in the G0/G1 phases. In addition, it is upregulated in colon cancer tissues compared to corresponding non-cancerous mucosa. It thus plays a crucial role in the life of the cell [].
Probab=59.01 E-value=95 Score=32.82 Aligned_cols=60 Identities=20% Similarity=0.212 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 007579 468 QTEATTLSAQLTLLQRDSVGLTNQNNELKFRLQAMEQQAQLRDALNEALTAEVRRLKVAT 527 (597)
Q Consensus 468 QtEN~tLsaQLtlLqre~~~L~aEN~ELK~RLqaLEqQaqLrdALnEaLkeEVqrLK~a~ 527 (597)
+.+...+..++..+..+-..|......-|..|+..+..++-...+.-+..+|.++|..-+
T Consensus 175 ~~~~~~~~~~l~~l~~de~~Le~KIekkk~ELER~qKRL~sLq~vRPAfmdEyEklE~EL 234 (267)
T PF10234_consen 175 QQQLQQTQQQLNNLASDEANLEAKIEKKKQELERNQKRLQSLQSVRPAFMDEYEKLEEEL 234 (267)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHH
Confidence 334444444444444444444444444444444444444444444444444544444433
No 415
>KOG4657 consensus Uncharacterized conserved protein [Function unknown]
Probab=58.95 E-value=1.9e+02 Score=30.51 Aligned_cols=82 Identities=13% Similarity=0.132 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHH
Q 007579 447 ARSKERKMRYISELEHKVQTLQTEATTLSAQLTLLQRDSVGLTNQNNELKFRL----QAMEQQAQLRDALNEALTAEVRR 522 (597)
Q Consensus 447 aRSReRKKqYIeELE~KVq~LQtEN~tLsaQLtlLqre~~~L~aEN~ELK~RL----qaLEqQaqLrdALnEaLkeEVqr 522 (597)
+++..-+.+|+..|-+..+.++.-.+.|......+.+.+. |..|...+..++ ..+.++......-+..|++|..+
T Consensus 40 ~~~~nS~~efar~lS~~~~e~e~l~~~l~etene~~~~ne-L~~ek~~~q~~ieqeik~~q~elEvl~~n~Q~lkeE~dd 118 (246)
T KOG4657|consen 40 RRSMNSLVEFARALSQSQVELENLKADLRETENELVKVNE-LKTEKEARQMGIEQEIKATQSELEVLRRNLQLLKEEKDD 118 (246)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q ss_pred HHHHhcc
Q 007579 523 LKVATQE 529 (597)
Q Consensus 523 LK~a~gE 529 (597)
++..+.+
T Consensus 119 ~keiIs~ 125 (246)
T KOG4657|consen 119 SKEIISQ 125 (246)
T ss_pred HHHHHHH
No 416
>PF03961 DUF342: Protein of unknown function (DUF342); InterPro: IPR005646 This family of bacterial proteins has no known function. The proteins are in the region of 500-600 amino acid residues in length.
Probab=58.82 E-value=49 Score=36.08 Aligned_cols=9 Identities=33% Similarity=0.815 Sum_probs=5.4
Q ss_pred CCCCCCCcc
Q 007579 179 GESLPPRNK 187 (597)
Q Consensus 179 ~~~LpPrk~ 187 (597)
|..+||+.+
T Consensus 132 G~~I~~~~~ 140 (451)
T PF03961_consen 132 GEPIPAKPG 140 (451)
T ss_pred CCCcCCCCC
Confidence 566666554
No 417
>PF12709 Kinetocho_Slk19: Central kinetochore-associated; InterPro: IPR024312 This is a family of proteins integrally involved in the central kinetochore. Slk19 is a yeast member and it may play an important role in the timing of nuclear migration. It may also participate, directly or indirectly, in the maintenance of centromeric tensile strength during mitotic stagnation, for instance during activation of checkpoint controls, when cells need to preserve nuclear integrity until cell cycle progression can be resumed [].
Probab=58.81 E-value=87 Score=28.29 Aligned_cols=44 Identities=25% Similarity=0.296 Sum_probs=34.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007579 452 RKMRYISELEHKVQTLQTEATTLSAQLTLLQRDSVGLTNQNNEL 495 (597)
Q Consensus 452 RKKqYIeELE~KVq~LQtEN~tLsaQLtlLqre~~~L~aEN~EL 495 (597)
=|+-|-..-|.+|..|+.++..|..++..|+.+......|..+|
T Consensus 39 LKksYe~rwek~v~~L~~e~~~l~~E~e~L~~~l~~e~~Ek~~L 82 (87)
T PF12709_consen 39 LKKSYEARWEKKVDELENENKALKRENEQLKKKLDTEREEKQEL 82 (87)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 37888888888888888888888888888888766666665554
No 418
>PF13805 Pil1: Eisosome component PIL1; PDB: 3PLT_B.
Probab=58.80 E-value=63 Score=34.23 Aligned_cols=62 Identities=21% Similarity=0.358 Sum_probs=33.9
Q ss_pred HHHhhHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007579 439 ILANRQSAAR-SKERKMRYISELEHKVQTLQTEATTLSAQLTLLQRDSVGLTNQNNELKFRLQAMEQQ 505 (597)
Q Consensus 439 ILaNRESAaR-SReRKKqYIeELE~KVq~LQtEN~tLsaQLtlLqre~~~L~aEN~ELK~RLqaLEqQ 505 (597)
-|+|||.+-. +|.||+.-..++ .+++. ..- -..+|..|++++..+++++-....+|..+..+
T Consensus 132 ~IR~~E~sl~p~R~~r~~l~d~I-~kLk~---k~P-~s~kl~~LeqELvraEae~lvaEAqL~n~kR~ 194 (271)
T PF13805_consen 132 SIRNREESLQPSRDRRRKLQDEI-AKLKY---KDP-QSPKLVVLEQELVRAEAENLVAEAQLSNIKRQ 194 (271)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH-HHHHH---H-T-TTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhHHHHHhHHHHHHH-HHHHh---cCC-CChHHHHHHHHHHHHHHHhhHHHHHHHHhhHH
Confidence 3577776544 455554433333 22332 211 24466677777777777777777777666544
No 419
>KOG2077 consensus JNK/SAPK-associated protein-1 [Signal transduction mechanisms]
Probab=58.76 E-value=89 Score=36.69 Aligned_cols=69 Identities=16% Similarity=0.258 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007579 444 QSAARSKERKMRYISELEHKVQTLQTEATTL--------------SAQLTLLQRDSVGLTNQNNELKFRLQAMEQQAQLR 509 (597)
Q Consensus 444 ESAaRSReRKKqYIeELE~KVq~LQtEN~tL--------------saQLtlLqre~~~L~aEN~ELK~RLqaLEqQaqLr 509 (597)
++++..+.|=.+.|.+||.+++.+..|...- ..+--..+.+.+...+|-+.+|.||.+|+...++-
T Consensus 346 ea~kqak~Klee~i~elEEElk~~k~ea~~ar~~~~~~e~ddiPmAqRkRFTRvEMaRVLMeRNqYKErLMELqEavrWT 425 (832)
T KOG2077|consen 346 EAVKQAKLKLEEKIRELEEELKKAKAEAEDARQKAKDDEDDDIPMAQRKRFTRVEMARVLMERNQYKERLMELQEAVRWT 425 (832)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccccHHHHhhhHHHHHHHHHHHHhHHHHHHHHHHHHHhHH
Q ss_pred HHH
Q 007579 510 DAL 512 (597)
Q Consensus 510 dAL 512 (597)
+-+
T Consensus 426 EMi 428 (832)
T KOG2077|consen 426 EMI 428 (832)
T ss_pred HHH
No 420
>PF15058 Speriolin_N: Speriolin N terminus
Probab=58.75 E-value=22 Score=36.15 Aligned_cols=36 Identities=31% Similarity=0.450 Sum_probs=28.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007579 457 ISELEHKVQTLQTEATTLSAQLTLLQRDSVGLTNQNNELKFRLQ 500 (597)
Q Consensus 457 IeELE~KVq~LQtEN~tLsaQLtlLqre~~~L~aEN~ELK~RLq 500 (597)
.|.|.++++.|..||++|+++|.++ .||.+||.-|.
T Consensus 7 yeGlrhqierLv~ENeeLKKlVrLi--------rEN~eLksaL~ 42 (200)
T PF15058_consen 7 YEGLRHQIERLVRENEELKKLVRLI--------RENHELKSALG 42 (200)
T ss_pred hHHHHHHHHHHHhhhHHHHHHHHHH--------HHHHHHHHHHH
Confidence 4678889999999999999998654 47778877653
No 421
>KOG2991 consensus Splicing regulator [RNA processing and modification]
Probab=58.74 E-value=87 Score=33.58 Aligned_cols=44 Identities=30% Similarity=0.291 Sum_probs=26.7
Q ss_pred HHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHH
Q 007579 459 ELEHKVQTLQTEATTLSAQ-----LTLLQRDSVGLTNQNNELKFRLQAM 502 (597)
Q Consensus 459 ELE~KVq~LQtEN~tLsaQ-----LtlLqre~~~L~aEN~ELK~RLqaL 502 (597)
-|-.|+..|+.||.+|-.+ |..|+-+++.-...+.|||..-..|
T Consensus 214 ~LMAKCR~L~qENeElG~q~s~Gria~Le~eLAmQKs~seElkssq~eL 262 (330)
T KOG2991|consen 214 MLMAKCRTLQQENEELGHQASEGRIAELEIELAMQKSQSEELKSSQEEL 262 (330)
T ss_pred HHHHHHHHHHHHHHHHHhhhhcccHHHHHHHHHHHHhhHHHHHHhHHHH
Confidence 4667777788887777553 4555555555555565655544333
No 422
>PHA03011 hypothetical protein; Provisional
Probab=58.56 E-value=61 Score=30.37 Aligned_cols=60 Identities=17% Similarity=0.192 Sum_probs=46.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007579 464 VQTLQTEATTLSAQLTLLQRDSVGLTNQNNELKFRLQAMEQQAQLRDALNEALTAEVRRL 523 (597)
Q Consensus 464 Vq~LQtEN~tLsaQLtlLqre~~~L~aEN~ELK~RLqaLEqQaqLrdALnEaLkeEVqrL 523 (597)
+..+......|.+|-.+|-.++.-++.|-+.|..-+|.-..+.+...+..+.||+.|..|
T Consensus 59 ~Nai~e~ldeL~~qYN~L~dEYn~i~Ne~k~~~~iIQdn~d~I~~LraeIDkLK~niaN~ 118 (120)
T PHA03011 59 INAIIEILDELIAQYNELLDEYNLIENEIKDLEIIIQDNDDEIHFLRAEIDKLKENIANL 118 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHhcc
Confidence 344445556677777778888888888888888888888888888888899998877654
No 423
>PF04375 HemX: HemX; InterPro: IPR007470 The majority of proteins in this family are annotated as uroporphyrin-III C-methyltransferase (2.1.1.107 from EC) []; however, there is no direct evidence to support this annotation for these proteins, which come from mainly pathogenic Gram-negative organisms. There is some evidence to suggest that the proteins are membrane anchored as they have a predicted N-terminal signal peptide and transmembrane domain and may be involved in haem transport [].
Probab=58.41 E-value=96 Score=33.37 Aligned_cols=16 Identities=25% Similarity=0.183 Sum_probs=8.2
Q ss_pred HHHHHHHHHHHHHHhc
Q 007579 513 NEALTAEVRRLKVATQ 528 (597)
Q Consensus 513 nEaLkeEVqrLK~a~g 528 (597)
.+++-+|++.|-..++
T Consensus 125 ~dW~LaEaeyLlrlA~ 140 (372)
T PF04375_consen 125 DDWLLAEAEYLLRLAN 140 (372)
T ss_pred HhHHHHHHHHHHHHHH
Confidence 4444456655554443
No 424
>PF07716 bZIP_2: Basic region leucine zipper; InterPro: IPR011700 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotes are proteins that contain a basic region mediating sequence-specific DNA-binding, followed by a leucine zipper region (see IPR002158 from INTERPRO), which is required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1NWQ_A 1H89_B 1H88_A 1GTW_B 2E43_A 1IO4_A 1GU4_B 2E42_A 1H8A_B 1GU5_B ....
Probab=58.41 E-value=29 Score=27.52 Aligned_cols=26 Identities=19% Similarity=0.349 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007579 478 LTLLQRDSVGLTNQNNELKFRLQAME 503 (597)
Q Consensus 478 LtlLqre~~~L~aEN~ELK~RLqaLE 503 (597)
+..|+.....|..+|..|+.++..|+
T Consensus 27 ~~~le~~~~~L~~en~~L~~~i~~L~ 52 (54)
T PF07716_consen 27 EEELEQEVQELEEENEQLRQEIAQLE 52 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34444445555555555555555543
No 425
>PF10234 Cluap1: Clusterin-associated protein-1; InterPro: IPR019366 This protein of 413 amino acids contains a central coiled-coil domain, possibly the region that binds to clusterin. Cluap1 expression is highest in the nucleus and gradually increases during late S to G2/M phases of the cell cycle and returns to the basal level in the G0/G1 phases. In addition, it is upregulated in colon cancer tissues compared to corresponding non-cancerous mucosa. It thus plays a crucial role in the life of the cell [].
Probab=58.09 E-value=90 Score=32.99 Aligned_cols=67 Identities=15% Similarity=0.220 Sum_probs=29.9
Q ss_pred HHHHHhhHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHH
Q 007579 437 KRILANRQSAARSK-ERKMRYISELEHKVQTLQTEATTLSAQLTLLQRDSVGLT-------NQNNELKFRLQAME 503 (597)
Q Consensus 437 KRILaNRESAaRSR-eRKKqYIeELE~KVq~LQtEN~tLsaQLtlLqre~~~L~-------aEN~ELK~RLqaLE 503 (597)
.+.|+.-..+.+.+ +.-++++..|+.....|+.....-+.++.-.++.+..|. .|-..|...|+.+-
T Consensus 164 E~~l~~ai~~~~~~~~~~~~~l~~l~~de~~Le~KIekkk~ELER~qKRL~sLq~vRPAfmdEyEklE~EL~~lY 238 (267)
T PF10234_consen 164 EKALKEAIKAVQQQLQQTQQQLNNLASDEANLEAKIEKKKQELERNQKRLQSLQSVRPAFMDEYEKLEEELQKLY 238 (267)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHH
Confidence 33334333333333 233444555555555555555444444444444444443 34444444444443
No 426
>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin []. Ezrin was first identified as a constituent of microvilli [], radixin as a barbed, end-capping actin-modulating protein from isolated junctional fractions [], and moesin as a heparin binding protein []. A tumour suppressor molecule responsible for neurofibromatosis type 2 (NF2) is highly similar to ERM proteins and has been designated merlin (moesin-ezrin-radixin-like protein). ERM molecules contain 3 domains, an N-terminal globular domain; an extended alpha-helical domain; and a charged C-terminal domain []. Ezrin, radixin and merlin also contain a polyproline region between the helical and C-terminal domains. The N-terminal domain is highly conserved, and is also found in merlin, band 4.1 proteins and members of the band 4.1 superfamily. ERM proteins crosslink actin filaments with plasma membranes. They co-localise with CD44 at actin filament-plasma membrane interaction sites, associating with CD44 via their N-terminal domains and with actin filaments via their C-terminal domains [].; GO: 0008092 cytoskeletal protein binding, 0005737 cytoplasm, 0019898 extrinsic to membrane; PDB: 2I1J_A 2I1K_A 1E5W_A 1EF1_C.
Probab=58.06 E-value=1.2e+02 Score=31.04 Aligned_cols=21 Identities=33% Similarity=0.465 Sum_probs=8.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 007579 457 ISELEHKVQTLQTEATTLSAQ 477 (597)
Q Consensus 457 IeELE~KVq~LQtEN~tLsaQ 477 (597)
+..|+.+.+.++.+...|..+
T Consensus 35 a~~Leek~k~aeeea~~Le~k 55 (246)
T PF00769_consen 35 AEELEEKLKQAEEEAEELEQK 55 (246)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 333444444433333333333
No 427
>PF08232 Striatin: Striatin family; InterPro: IPR013258 This domain is associated with the N terminus of striatin. Striatin is an intracellular protein which has a caveolin-binding motif, a coiled-coil structure, a calmodulin-binding site, and a WD (IPR001680 from INTERPRO) repeat domain []. It acts as a scaffold protein [] and is involved in signalling pathways [, ].
Probab=57.96 E-value=63 Score=30.41 Aligned_cols=47 Identities=21% Similarity=0.393 Sum_probs=37.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007579 459 ELEHKVQTLQTEATTLSAQLTLLQRDSVGLTNQNNELKFRLQAMEQQ 505 (597)
Q Consensus 459 ELE~KVq~LQtEN~tLsaQLtlLqre~~~L~aEN~ELK~RLqaLEqQ 505 (597)
.+|+.-..=+.|-++|+++|+.|+-+..++..=|..|+.||.-||..
T Consensus 15 r~ErdR~~WeiERaEmkarIa~LEGE~r~~e~l~~dL~rrIkMLE~a 61 (134)
T PF08232_consen 15 RFERDRNQWEIERAEMKARIAFLEGERRGQENLKKDLKRRIKMLEYA 61 (134)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566666677888899999999999999999999998888877655
No 428
>COG1382 GimC Prefoldin, chaperonin cofactor [Posttranslational modification, protein turnover, chaperones]
Probab=57.93 E-value=1.7e+02 Score=27.72 Aligned_cols=37 Identities=22% Similarity=0.318 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 007579 493 NELKFRLQAMEQQAQLRDALNEALTAEVRRLKVATQE 529 (597)
Q Consensus 493 ~ELK~RLqaLEqQaqLrdALnEaLkeEVqrLK~a~gE 529 (597)
.+|+.|++.|+-+..-.+...+.+.++++.|+..+-.
T Consensus 73 ~eL~er~E~Le~ri~tLekQe~~l~e~l~eLq~~i~~ 109 (119)
T COG1382 73 DELEERKETLELRIKTLEKQEEKLQERLEELQSEIQK 109 (119)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555555555555555566666666655544
No 429
>PF08703 PLC-beta_C: PLC-beta C terminal; InterPro: IPR014815 This domain corresponds to the alpha helical C-terminal domain of phospholipase C beta. ; GO: 0004435 phosphatidylinositol phospholipase C activity, 0005509 calcium ion binding, 0016042 lipid catabolic process; PDB: 1JAD_A.
Probab=57.82 E-value=2.2e+02 Score=28.81 Aligned_cols=68 Identities=26% Similarity=0.257 Sum_probs=43.9
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007579 435 RAKRILANRQSAARSKERKMRYISELEHKVQTLQTEATTLSA-----QLTLLQRDSVGLTNQNNELKFRLQAM 502 (597)
Q Consensus 435 R~KRILaNRESAaRSReRKKqYIeELE~KVq~LQtEN~tLsa-----QLtlLqre~~~L~aEN~ELK~RLqaL 502 (597)
..-+-|.+++...-...|+-+|..+.+.+.+.+......|.. +.+.|..-...+..+..+|+..|+.-
T Consensus 7 ~~~~eL~~~q~~eL~~l~~eq~~~e~e~ke~H~~e~~~kl~el~~e~Q~~QlK~LKe~~EkE~KElkK~L~~k 79 (185)
T PF08703_consen 7 QRVRELKEKQEQELLKLREEQYESEKELKEEHLKEQFQKLEELARECQAAQLKKLKETCEKETKELKKKLDRK 79 (185)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhHH
Confidence 344556777777777777777777777777777766666543 23333343445567788888777554
No 430
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.
Probab=57.77 E-value=1.5e+02 Score=32.20 Aligned_cols=27 Identities=15% Similarity=0.087 Sum_probs=10.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007579 476 AQLTLLQRDSVGLTNQNNELKFRLQAM 502 (597)
Q Consensus 476 aQLtlLqre~~~L~aEN~ELK~RLqaL 502 (597)
.+++.++.+...+..+...++.++..|
T Consensus 204 ~~l~~l~~~l~~~~~~l~~~~a~~~~l 230 (498)
T TIGR03007 204 SEISEAQEELEAARLELNEAIAQRDAL 230 (498)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333334444444444444444444433
No 431
>PF14645 Chibby: Chibby family
Probab=57.73 E-value=35 Score=31.67 Aligned_cols=22 Identities=27% Similarity=0.585 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 007579 481 LQRDSVGLTNQNNELKFRLQAM 502 (597)
Q Consensus 481 Lqre~~~L~aEN~ELK~RLqaL 502 (597)
+++++..|..||+-||.+++-|
T Consensus 76 l~~~n~~L~EENN~Lklk~elL 97 (116)
T PF14645_consen 76 LRKENQQLEEENNLLKLKIELL 97 (116)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3344445555677777766554
No 432
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]
Probab=57.71 E-value=1.8e+02 Score=36.73 Aligned_cols=21 Identities=24% Similarity=0.319 Sum_probs=11.3
Q ss_pred CCCCCCCc-cCCCCCCCCCCcccc
Q 007579 179 GESLPPRN-KHRRSNSDIPFGFST 201 (597)
Q Consensus 179 ~~~LpPrk-~HRRS~SD~p~G~s~ 201 (597)
|.+|-=.+ ||-||+ ++.|--.
T Consensus 220 GsClkm~~dG~V~s~--~aVGTPD 241 (1317)
T KOG0612|consen 220 GSCLKMDADGTVRSS--VAVGTPD 241 (1317)
T ss_pred hhHHhcCCCCcEEec--cccCCCC
Confidence 55565554 676654 4555433
No 433
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=57.70 E-value=83 Score=36.57 Aligned_cols=63 Identities=21% Similarity=0.291 Sum_probs=46.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007579 454 MRYISELEHKVQTLQTEATTLSAQLTLLQRDSVGLTNQNNELKFRLQAMEQQAQLRDALNEAL 516 (597)
Q Consensus 454 KqYIeELE~KVq~LQtEN~tLsaQLtlLqre~~~L~aEN~ELK~RLqaLEqQaqLrdALnEaL 516 (597)
|+.+.||+...-.|.++|..|...+..-+.-...|...-.+|+.+|..|..++.+++.....|
T Consensus 166 K~QL~Elq~~Fv~ltne~~elt~~lq~Eq~~~keL~~kl~~l~~~l~~~~e~le~K~qE~~~L 228 (617)
T PF15070_consen 166 KEQLAELQDAFVKLTNENMELTSALQSEQHVKKELQKKLGELQEKLHNLKEKLELKSQEAQSL 228 (617)
T ss_pred HHHHHHHHHHHHHHHHhhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH
Confidence 577888999888999999888888877777666777777777777777766666665433333
No 434
>PF10226 DUF2216: Uncharacterized conserved proteins (DUF2216); InterPro: IPR019359 Proteins in this entry are found in Metazoa and contain a coiled-coil domain. Some annotation suggests it might be PKR, the Hepatitis delta antigen-interacting protein A, but this could not be confirmed.
Probab=57.31 E-value=2.3e+02 Score=29.01 Aligned_cols=33 Identities=24% Similarity=0.233 Sum_probs=17.9
Q ss_pred CcChHHHhhhcchHHHHhhhccChHHHHHHHHhhHHHHHHH
Q 007579 410 EFSGAELKKIMANEKLAEIALTDPKRAKRILANRQSAARSK 450 (597)
Q Consensus 410 ~~s~~E~KKim~~ekLaElAl~DpKR~KRILaNRESAaRSR 450 (597)
.++++|+.+.-..+. -+|.||..+.+.++-.-+
T Consensus 7 ~~sDeell~~skeel--------~~rLR~~E~ek~~~m~~~ 39 (195)
T PF10226_consen 7 KVSDEELLRWSKEEL--------VRRLRRAEAEKMSLMVEH 39 (195)
T ss_pred cCCHHHHHhcCHHHH--------HHHHHHHHHHHHHHHHHH
Confidence 345555555544332 256777666666665444
No 435
>PF14523 Syntaxin_2: Syntaxin-like protein; PDB: 2DNX_A.
Probab=57.26 E-value=1.2e+02 Score=25.86 Aligned_cols=23 Identities=22% Similarity=0.293 Sum_probs=9.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 007579 473 TLSAQLTLLQRDSVGLTNQNNEL 495 (597)
Q Consensus 473 tLsaQLtlLqre~~~L~aEN~EL 495 (597)
.|+.+|..+...+..|..+-.++
T Consensus 30 ~lR~~i~~~~~~~~~l~k~~~~~ 52 (102)
T PF14523_consen 30 ELREKIHQLIQKTNQLIKEISEL 52 (102)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444443333333
No 436
>PF07558 Shugoshin_N: Shugoshin N-terminal coiled-coil region; InterPro: IPR011516 This entry represents the N-terminal domain of Shugoshin (Sgo1) kinetochore-attachment proteins. Shugoshin has a conserved coiled-coil N-terminal domain and a highly conserved C-terminal basic region (IPR011515 from INTERPRO). Shugoshin is a crucial target of Bub1 kinase that plays a central role in chromosome cohesion during mitosis and meiosis divisions by preventing premature dissociation of cohesin complex from centromeres after prophase, when most of cohesin complex dissociates from chromosomes arms [, ]. Shugoshin is thought to act by protecting Rec8 and Rad21 at the centromeres from separase degradation during anaphase I (during meiosis) so that sister chromatids remain tethered []. Shugoshin also acts as a spindle checkpoint component required for sensing tension between sister chromatids during mitosis, its degradation when they separate preventing cell cycle arrest and chromosome loss in anaphase, a time when sister chromatids are no longer under tension. Human shugoshin is diffusible and mediates kinetochore-driven formation of kinetochore-microtubules during bipolar spindle assembly []. Further, the primary role of shugoshin is to ensure bipolar attachment of kinetochores, and its role in protecting cohesion has co-developed to facilitate this process [].; GO: 0045132 meiotic chromosome segregation, 0000775 chromosome, centromeric region, 0005634 nucleus; PDB: 3FGA_D.
Probab=56.56 E-value=12 Score=29.50 Aligned_cols=42 Identities=31% Similarity=0.347 Sum_probs=11.6
Q ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007579 436 AKRILANRQSAARSKERKMRYISELEHKVQTLQTEATTLSAQL 478 (597)
Q Consensus 436 ~KRILaNRESAaRSReRKKqYIeELE~KVq~LQtEN~tLsaQL 478 (597)
.|++..||+=|+..-.... .|.+||.++..|..||-.|+.++
T Consensus 3 ~k~~~qn~~laK~Ns~l~~-ki~~le~~~s~L~~en~~lR~~~ 44 (46)
T PF07558_consen 3 EKYSRQNRELAKRNSALSI-KIQELENEVSKLLNENVNLRELV 44 (46)
T ss_dssp ----------------------------HHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHhHhHHHHh-HHHHHHhHHHHHHHHHHHHHHHh
Confidence 4556666666665555443 37778888888888888777765
No 437
>PF01166 TSC22: TSC-22/dip/bun family; InterPro: IPR000580 Several eukaryotic proteins are evolutionary related and are thought to be involved in transcriptional regulation. These proteins are highly similar in a region of about 50 residues that include a conserved leucine-zipper domain most probably involved in homo- or hetero-dimerisation. Proteins containing this signature include: Vertebrate protein TSC-22 [], a transcriptional regulator which seems to act on C-type natriuretic peptide (CNP) promoter. Mammalian protein DIP (DSIP-immunoreactive peptide) [], a protein whose function is not yet known. Drosophila protein bunched [] (gene bun) (also known as shortsighted), a probable transcription factor required for peripheral nervous system morphogenesis, eye development and oogenesis. Caenorhabditis elegans hypothetical protein T18D3.7. ; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1DIP_B.
Probab=56.53 E-value=18 Score=30.60 Aligned_cols=23 Identities=30% Similarity=0.419 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 007579 455 RYISELEHKVQTLQTEATTLSAQ 477 (597)
Q Consensus 455 qYIeELE~KVq~LQtEN~tLsaQ 477 (597)
..|.+|+.++..|+.||+-|+..
T Consensus 21 ~~I~eL~~~n~~Le~EN~~Lk~~ 43 (59)
T PF01166_consen 21 EQIAELEERNSQLEEENNLLKQN 43 (59)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhc
Confidence 34667777777777777776654
No 438
>PF02050 FliJ: Flagellar FliJ protein; InterPro: IPR012823 Many flagellar proteins are exported by a flagellum-specific export pathway. Attempts have been made to characterise the apparatus responsible for this process, by designing assays to screen for mutants with export defects []. Experiments involving filament removal from temperature-sensitive flagellar mutants of Salmonella typhimurium have shown that, while most mutants were able to regrow filaments, flhA, fliH, fliI and fliN mutants showed no or greatly reduced regrowth. This suggests that the corresponding gene products are involved in the process of flagellum-specific export. The sequences of fliH, fliI and the adjacent gene, fliJ, have been deduced. FliJ was shown to encode a protein of molecular mass 17,302 Da []. It is a membrane-associated protein that affects chemotactic events, mutations in FliJ result in failure to respond to chemotactic stimuli.; GO: 0003774 motor activity, 0001539 ciliary or flagellar motility, 0006935 chemotaxis, 0009288 bacterial-type flagellum, 0016020 membrane, 0044461 bacterial-type flagellum part; PDB: 3AJW_A.
Probab=56.32 E-value=1.2e+02 Score=25.39 Aligned_cols=30 Identities=33% Similarity=0.504 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007579 455 RYISELEHKVQTLQTEATTLSAQLTLLQRD 484 (597)
Q Consensus 455 qYIeELE~KVq~LQtEN~tLsaQLtlLqre 484 (597)
.|+.-|+..+..++.+...+..++..++..
T Consensus 52 ~~~~~l~~~i~~~~~~~~~~~~~~~~~r~~ 81 (123)
T PF02050_consen 52 RYISALEQAIQQQQQELERLEQEVEQAREE 81 (123)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444444444444444444433
No 439
>TIGR03545 conserved hypothetical protein TIGR03545. This model represents a relatively rare but broadly distributed uncharacterized protein family, distributed in 1-2 percent of bacterial genomes, all of which have outer membranes. In many of these genomes, it is part of a two-gene pair.
Probab=56.10 E-value=1.2e+02 Score=34.77 Aligned_cols=76 Identities=13% Similarity=0.210 Sum_probs=40.7
Q ss_pred HHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHH
Q 007579 453 KMRYISELEHKVQTLQTE-------ATTLSAQLTLLQRDSVGLTNQNNELKFRLQAMEQQ-AQLRDALNEALTAEVRRLK 524 (597)
Q Consensus 453 KKqYIeELE~KVq~LQtE-------N~tLsaQLtlLqre~~~L~aEN~ELK~RLqaLEqQ-aqLrdALnEaLkeEVqrLK 524 (597)
+++-+++++.+|+.|+.. .....+++..|+.+.......-+.++..|+....+ .+...++-.+-++.+.+|+
T Consensus 189 ~~~~~~~yk~~v~~i~~~~ik~p~~i~~~~~e~d~lk~e~~~~~~~i~~~~~~l~~~~~~~~~~~~~lk~ap~~D~~~L~ 268 (555)
T TIGR03545 189 NKQDLEEYKKRLEAIKKKDIKNPLELQKIKEEFDKLKKEGKADKQKIKSAKNDLQNDKKQLKADLAELKKAPQNDLKRLE 268 (555)
T ss_pred CchhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhccHhHHHHHH
Confidence 345667777777777664 22344445545444444444444444444433222 3333345555556777777
Q ss_pred HHhc
Q 007579 525 VATQ 528 (597)
Q Consensus 525 ~a~g 528 (597)
..++
T Consensus 269 ~~~~ 272 (555)
T TIGR03545 269 NKYA 272 (555)
T ss_pred HHhC
Confidence 7776
No 440
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]
Probab=55.99 E-value=1.6e+02 Score=37.27 Aligned_cols=11 Identities=18% Similarity=0.295 Sum_probs=5.9
Q ss_pred CCCCCCccCCC
Q 007579 180 ESLPPRNKHRR 190 (597)
Q Consensus 180 ~~LpPrk~HRR 190 (597)
+.|=-+-||-|
T Consensus 205 NvLld~~GHik 215 (1317)
T KOG0612|consen 205 NVLLDKSGHIK 215 (1317)
T ss_pred eeEecccCcEe
Confidence 34444556665
No 441
>PRK03947 prefoldin subunit alpha; Reviewed
Probab=55.94 E-value=1.5e+02 Score=27.26 Aligned_cols=30 Identities=33% Similarity=0.399 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007579 454 MRYISELEHKVQTLQTEATTLSAQLTLLQR 483 (597)
Q Consensus 454 KqYIeELE~KVq~LQtEN~tLsaQLtlLqr 483 (597)
..++++|-...+.|+.+...|..++..|..
T Consensus 5 ~~~l~~l~~~~~~l~~~~~~l~~~~~~l~~ 34 (140)
T PRK03947 5 EQELEELAAQLQALQAQIEALQQQLEELQA 34 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555554444444444444443
No 442
>PF06632 XRCC4: DNA double-strand break repair and V(D)J recombination protein XRCC4; InterPro: IPR010585 This entry represents the DNA double-strand break repair and V(D)J recombination protein XRCC4, which is found in certain Metazoans, fungi and plants. XRCC4 binds to DNA, and to DNA ligase IV (LIG4) to form the LIG4-XRCC4 complex []. The LIG4-XRCC4 complex is responsible for the ligation step in the non-homologous end joining (NHEJ) pathway of DNA double-strand break repair. XRCC4 enhances the joining activity of LIG4. It is thought that XRCC4 and LIG4 are essential for alignment-based gap filling, as well as for final ligation of the breaks []. Binding of the LIG4-XRCC4 complex to DNA ends is dependent on the assembly of the DNA-dependent protein kinase complex DNA-PK to these DNA ends. ; GO: 0003677 DNA binding, 0006302 double-strand break repair, 0006310 DNA recombination, 0005634 nucleus; PDB: 3RWR_R 1IK9_B 3SR2_E 3Q4F_H 3II6_B 1FU1_A 3MUD_B.
Probab=55.77 E-value=1.7e+02 Score=31.79 Aligned_cols=42 Identities=21% Similarity=0.208 Sum_probs=27.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007579 457 ISELEHKVQTLQTEATTLSAQLTLLQRDSVGLTNQNNELKFR 498 (597)
Q Consensus 457 IeELE~KVq~LQtEN~tLsaQLtlLqre~~~L~aEN~ELK~R 498 (597)
+.+|+.++..|+.+|..|..++..+..++..+..+..++...
T Consensus 139 ~~~l~~~~~~L~~enerL~~e~~~~~~qlE~~v~~K~~~E~~ 180 (342)
T PF06632_consen 139 NSRLQAENEHLQKENERLESEANKLLKQLEKFVNAKEEHEED 180 (342)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455666666777777777777777777777766665555444
No 443
>PF04129 Vps52: Vps52 / Sac2 family ; InterPro: IPR007258 Vps52 complexes with Vps53 and Vps54 to form a multi-subunit complex involved in regulating membrane trafficking events [].
Probab=55.71 E-value=1.4e+02 Score=33.41 Aligned_cols=63 Identities=19% Similarity=0.295 Sum_probs=33.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007579 455 RYISELEHKVQTLQTEATTLSAQLTLLQRDSVGLTNQNNELKFRLQAMEQQAQLRDALNEALT 517 (597)
Q Consensus 455 qYIeELE~KVq~LQtEN~tLsaQLtlLqre~~~L~aEN~ELK~RLqaLEqQaqLrdALnEaLk 517 (597)
..+.+|-.+++....-...|...+...+.+...+..|-+.|+.+-..|..++.-|.++.+.|.
T Consensus 14 ~~~~~Lh~~i~~cd~~L~~le~~L~~Fq~~L~~iS~eI~~LQ~~S~~l~~~L~Nrk~~~~~L~ 76 (508)
T PF04129_consen 14 ENFADLHNQIQECDSILESLEEMLSNFQNDLGSISSEIRSLQERSSSLNVKLKNRKAVEEKLS 76 (508)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 334444455555555555555555555555555555555555555555555555544444443
No 444
>PF15397 DUF4618: Domain of unknown function (DUF4618)
Probab=55.61 E-value=1.5e+02 Score=31.34 Aligned_cols=27 Identities=15% Similarity=0.122 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007579 455 RYISELEHKVQTLQTEATTLSAQLTLL 481 (597)
Q Consensus 455 qYIeELE~KVq~LQtEN~tLsaQLtlL 481 (597)
.-+++|...+..|...|..|...|...
T Consensus 6 ~sl~el~~h~~~L~~~N~~L~~~Iqdt 32 (258)
T PF15397_consen 6 TSLQELKKHEDFLTKLNKELIKEIQDT 32 (258)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHhH
Confidence 334555555555555555555544433
No 445
>KOG4572 consensus Predicted DNA-binding transcription factor, interacts with stathmin [Transcription; General function prediction only; Signal transduction mechanisms]
Probab=55.54 E-value=2.6e+02 Score=34.46 Aligned_cols=81 Identities=17% Similarity=0.165 Sum_probs=48.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------------------HHHHH-----------
Q 007579 455 RYISELEHKVQTLQTEATTLSAQLTLLQRDSVGLTNQNNELK----------------------FRLQA----------- 501 (597)
Q Consensus 455 qYIeELE~KVq~LQtEN~tLsaQLtlLqre~~~L~aEN~ELK----------------------~RLqa----------- 501 (597)
+++.++|.....+..++..++.++..+.++...|.++..+.+ .++.+
T Consensus 995 Rh~kefE~~mrdhrselEe~kKe~eaiineiee~eaeIiQekE~el~e~efka~d~Sd~r~kie~efAa~eaemdeik~~ 1074 (1424)
T KOG4572|consen 995 RHEKEFEIEMRDHRSELEEKKKELEAIINEIEELEAEIIQEKEGELIEDEFKALDESDPRAKIEDEFAAIEAEMDEIKDG 1074 (1424)
T ss_pred HHHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHhhhccccCcchhHHHHHHHHHhhhhhhhhh
Confidence 466667777777777777777777766666666665543221 11111
Q ss_pred --------HHHHHHHHHHHHHHHHHHHHHHHHHhccccCCCC
Q 007579 502 --------MEQQAQLRDALNEALTAEVRRLKVATQEMASESD 535 (597)
Q Consensus 502 --------LEqQaqLrdALnEaLkeEVqrLK~a~gEi~~~~~ 535 (597)
++-...|+....+.|+.|++.|+..+..-+...+
T Consensus 1075 ~~edrakqkei~k~L~ehelenLrnEieklndkIkdnne~~Q 1116 (1424)
T KOG4572|consen 1075 KCEDRAKQKEIDKILKEHELENLRNEIEKLNDKIKDNNEGDQ 1116 (1424)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcch
Confidence 1111233444577888899999888876555433
No 446
>PF04899 MbeD_MobD: MbeD/MobD like ; InterPro: IPR006983 The MbeD and MobD proteins are plasmid encoded, and are involved in the plasmid mobilisation and transfer in the presence of conjugative plasmids [].
Probab=55.47 E-value=88 Score=27.01 Aligned_cols=41 Identities=22% Similarity=0.310 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007579 465 QTLQTEATTLSAQLTLLQRDSVGLTNQNNELKFRLQAMEQQ 505 (597)
Q Consensus 465 q~LQtEN~tLsaQLtlLqre~~~L~aEN~ELK~RLqaLEqQ 505 (597)
+..+..-+.|..+++..+++...|...+..|..++..|..+
T Consensus 24 ~~Wq~sy~~Lq~~~~~t~~~~a~L~~qv~~Ls~qv~~Ls~q 64 (70)
T PF04899_consen 24 QEWQSSYADLQHMFEQTSQENAALSEQVNNLSQQVQRLSEQ 64 (70)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555555555555555555555566666666655554
No 447
>PF04340 DUF484: Protein of unknown function, DUF484; InterPro: IPR007435 This family consists of several proteins of uncharacterised function.; PDB: 3E98_B.
Probab=55.42 E-value=55 Score=32.37 Aligned_cols=40 Identities=23% Similarity=0.380 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007579 477 QLTLLQRDSVGLTNQNNELKFRLQAMEQQAQLRDALNEAL 516 (597)
Q Consensus 477 QLtlLqre~~~L~aEN~ELK~RLqaLEqQaqLrdALnEaL 516 (597)
-|.+.+++...|..+|++|+.+|+.|...++--+.+.+.+
T Consensus 41 avSL~erQ~~~LR~~~~~L~~~l~~Li~~Ar~Ne~~~~~~ 80 (225)
T PF04340_consen 41 AVSLVERQLERLRERNRQLEEQLEELIENARENEAIFQRL 80 (225)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5666777777777777777777777766666555554444
No 448
>TIGR03017 EpsF chain length determinant protein EpsF. Sequences in this family of proteins are members of the chain length determinant family (pfam02706) which includes the wzc protein from E.coli. This family of proteins are homologous to the EpsF protein of the methanolan biosynthesis operon of Methylobacillus species strain 12S. The distribution of this protein appears to be restricted to a subset of exopolysaccharide operons containing a syntenic grouping of genes including a variant of the EpsH exosortase protein. Exosortase has been proposed to be involved in the targetting and processing of proteins containing the PEP-CTERM domain to the exopolysaccharide layer.
Probab=55.39 E-value=2.5e+02 Score=29.95 Aligned_cols=98 Identities=16% Similarity=0.190 Sum_probs=0.0
Q ss_pred ChHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHH
Q 007579 432 DPKRAKRILANRQSAARSKERKMRYISELEHKVQTLQTEATTLSAQLTLLQRDSVGLTNQNNEL---------KFRLQAM 502 (597)
Q Consensus 432 DpKR~KRILaNRESAaRSReRKKqYIeELE~KVq~LQtEN~tLsaQLtlLqre~~~L~aEN~EL---------K~RLqaL 502 (597)
||+++.++ .|.....=-...........+.....|+.+...++.++...+.+......+|..+ ..+|..+
T Consensus 142 dp~~A~~i-~n~~~~~y~~~~~~~~~~~~~~~~~fl~~ql~~~~~~l~~ae~~l~~fr~~~~i~~~~~~~~~~~~~l~~l 220 (444)
T TIGR03017 142 DPRFAATV-ANAFAQAYIDTNIELKVEPAQKAALWFVQQIAALREDLARAQSKLSAYQQEKGIVSSDERLDVERARLNEL 220 (444)
T ss_pred CHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccCcccchHHHHHHHH
Q ss_pred HHHHHHHHH-------------------------HHHHHHHHHHHHHHHhccc
Q 007579 503 EQQAQLRDA-------------------------LNEALTAEVRRLKVATQEM 530 (597)
Q Consensus 503 EqQaqLrdA-------------------------LnEaLkeEVqrLK~a~gEi 530 (597)
+.+.....+ ....|+.++..|+....++
T Consensus 221 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~l~~le~~l~~l 273 (444)
T TIGR03017 221 SAQLVAAQAQVMDASSKEGGSSGKDALPEVIANPIIQNLKTDIARAESKLAEL 273 (444)
T ss_pred HHHHHHHHHHHHHHHHHHhccCCcccchhhhcChHHHHHHHHHHHHHHHHHHH
No 449
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=55.07 E-value=84 Score=31.07 Aligned_cols=52 Identities=21% Similarity=0.278 Sum_probs=28.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHH
Q 007579 443 RQSAARSKERKMRYISELEHKVQTLQT------EATTLSAQLTLLQRDSVGLTNQNNE 494 (597)
Q Consensus 443 RESAaRSReRKKqYIeELE~KVq~LQt------EN~tLsaQLtlLqre~~~L~aEN~E 494 (597)
-....+.-++...-+.+|+.++..+.. +-..|.+++..|+.++..|..|...
T Consensus 71 ~~~l~~~~~~~~~~i~~l~~~i~~~~~~r~~~~eR~~~l~~l~~l~~~~~~l~~el~~ 128 (188)
T PF03962_consen 71 LEKLQKEIEELEKKIEELEEKIEEAKKGREESEEREELLEELEELKKELKELKKELEK 128 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555556666667777777776654 3333444455554444444444443
No 450
>KOG3335 consensus Predicted coiled-coil protein [General function prediction only]
Probab=54.99 E-value=17 Score=36.43 Aligned_cols=42 Identities=26% Similarity=0.337 Sum_probs=27.7
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007579 434 KRAKRILANRQSAARSKERKMRYISELEHKVQTLQTEATTLSAQLTLL 481 (597)
Q Consensus 434 KR~KRILaNRESAaRSReRKKqYIeELE~KVq~LQtEN~tLsaQLtlL 481 (597)
.|.+|-.+++ .+..++.+.||+.+|..|+.+...+...+..|
T Consensus 91 ~R~~~~e~~k------ee~~~~e~~elr~~~~~l~~~i~~~~~~~~~L 132 (181)
T KOG3335|consen 91 WRQARKERKK------EEKRKQEIMELRLKVEKLENAIAELTKFFSQL 132 (181)
T ss_pred HHhhhcchhh------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555544444 66677788888888888877666555555544
No 451
>KOG0239 consensus Kinesin (KAR3 subfamily) [Cytoskeleton]
Probab=54.97 E-value=98 Score=36.36 Aligned_cols=17 Identities=24% Similarity=0.284 Sum_probs=9.4
Q ss_pred HHHHHHHHhccccCCCC
Q 007579 519 EVRRLKVATQEMASESD 535 (597)
Q Consensus 519 EVqrLK~a~gEi~~~~~ 535 (597)
+..+|.-.+.|+-+...
T Consensus 301 ~r~kL~N~i~eLkGnIR 317 (670)
T KOG0239|consen 301 ERRKLHNEILELKGNIR 317 (670)
T ss_pred HHHHHHHHHHHhhcCce
Confidence 34456666666655543
No 452
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=54.87 E-value=1.8e+02 Score=26.92 Aligned_cols=32 Identities=22% Similarity=0.314 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007579 489 TNQNNELKFRLQAMEQQAQLRDALNEALTAEV 520 (597)
Q Consensus 489 ~aEN~ELK~RLqaLEqQaqLrdALnEaLkeEV 520 (597)
..+...|...+..++..+.-....|..|..-|
T Consensus 97 ~~qk~~le~e~~~~~~r~~dL~~QN~lLh~Ql 128 (132)
T PF07926_consen 97 EEQKEQLEKELSELEQRIEDLNEQNKLLHDQL 128 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444444444455554433
No 453
>COG5293 Predicted ATPase [General function prediction only]
Probab=54.80 E-value=2.6e+02 Score=32.29 Aligned_cols=78 Identities=13% Similarity=0.253 Sum_probs=48.7
Q ss_pred HHHHHHhhHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007579 436 AKRILANRQSAARSKERKMR-YISELEHKVQTLQTEATTLS---------AQLTLLQRDSVGLTNQNNELKFRLQAMEQQ 505 (597)
Q Consensus 436 ~KRILaNRESAaRSReRKKq-YIeELE~KVq~LQtEN~tLs---------aQLtlLqre~~~L~aEN~ELK~RLqaLEqQ 505 (597)
-++|+.||-+=-.++-.|.+ -+.+++.+++.|..+-+++. .+.+.|.+++..+..|..+|+.|++.+.+-
T Consensus 329 ~r~~~e~R~~yl~~ei~~i~~dLk~~n~~~~~l~~~rae~l~~Lk~~g~~e~y~~l~ee~~~~~~elae~~~rie~l~k~ 408 (591)
T COG5293 329 NRAITEERHDYLQEEIAEIEGDLKEVNAELDDLGKRRAEGLAFLKNRGVFEKYQTLCEEIIALRGELAELEYRIEPLRKL 408 (591)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHhhhHHHHHHhhhHHHHH
Confidence 36778888776666654433 34555555555555444432 345566777777777888888888777666
Q ss_pred HHHHHHHH
Q 007579 506 AQLRDALN 513 (597)
Q Consensus 506 aqLrdALn 513 (597)
..+.+.++
T Consensus 409 ~~~~~~i~ 416 (591)
T COG5293 409 HALDQYIG 416 (591)
T ss_pred HHHHHHHH
Confidence 55555543
No 454
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=54.73 E-value=2.4e+02 Score=33.69 Aligned_cols=45 Identities=24% Similarity=0.286 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007579 459 ELEHKVQTLQTEATTLSAQLTLLQRDSVGLTNQNNELKFRLQAME 503 (597)
Q Consensus 459 ELE~KVq~LQtEN~tLsaQLtlLqre~~~L~aEN~ELK~RLqaLE 503 (597)
++...+..|+.+.....++++.++..+..+..+...++.+...++
T Consensus 563 e~~~~~~~Lq~~~ek~~~~le~i~~~~~e~~~ele~~~~k~~rle 607 (698)
T KOG0978|consen 563 EAKQSLEDLQIELEKSEAKLEQIQEQYAELELELEIEKFKRKRLE 607 (698)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444455555555555555555444444444443
No 455
>PRK14471 F0F1 ATP synthase subunit B; Provisional
Probab=54.61 E-value=1.9e+02 Score=27.23 Aligned_cols=46 Identities=13% Similarity=0.164 Sum_probs=37.5
Q ss_pred hHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007579 433 PKRAKRILANRQSAARSKERKMRYISELEHKVQTLQTEATTLSAQL 478 (597)
Q Consensus 433 pKR~KRILaNRESAaRSReRKKqYIeELE~KVq~LQtEN~tLsaQL 478 (597)
.+|..+|...-+.|.+.|..=.+...+.|.++.....+...+..+.
T Consensus 38 ~~R~~~I~~~l~~A~~~~~ea~~~~~e~e~~l~~A~~ea~~ii~~A 83 (164)
T PRK14471 38 KEREDSIKNALASAEEARKEMQNLQADNERLLKEARAERDAILKEA 83 (164)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4677888888888999888888888899998888888877766543
No 456
>PRK11091 aerobic respiration control sensor protein ArcB; Provisional
Probab=54.57 E-value=2.6e+02 Score=31.88 Aligned_cols=18 Identities=11% Similarity=0.025 Sum_probs=7.7
Q ss_pred HHHHHHHHHHHHHhcccc
Q 007579 514 EALTAEVRRLKVATQEMA 531 (597)
Q Consensus 514 EaLkeEVqrLK~a~gEi~ 531 (597)
+.|++.-+.|+..+..++
T Consensus 148 ~~l~~~~~~l~~il~~~~ 165 (779)
T PRK11091 148 IELEQQSSLLRSFLDASP 165 (779)
T ss_pred HHHHHHHHHHHHHHhcCc
Confidence 334444444444444333
No 457
>PF05300 DUF737: Protein of unknown function (DUF737); InterPro: IPR007964 This family consists of several uncharacterised mammalian proteins of unknown function.
Probab=54.57 E-value=1.1e+02 Score=30.65 Aligned_cols=52 Identities=21% Similarity=0.356 Sum_probs=43.6
Q ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007579 437 KRILANRQSAARSKERKMRYISELEHKVQTLQTEATTLSAQLTLLQRDSVGL 488 (597)
Q Consensus 437 KRILaNRESAaRSReRKKqYIeELE~KVq~LQtEN~tLsaQLtlLqre~~~L 488 (597)
+=|++-|.++..-|.|=+.|..+||.+=..|....+-++.||..|++.+..+
T Consensus 116 ~ai~rer~~~~~E~~ka~~la~qLe~ke~el~~~d~fykeql~~le~k~~e~ 167 (187)
T PF05300_consen 116 RAILRERASTEQERQKAKQLARQLEEKEAELKKQDAFYKEQLARLEEKNAEF 167 (187)
T ss_pred HHHHHhhhcchhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3377888999999999999999999999999888888888888888766544
No 458
>PF06818 Fez1: Fez1; InterPro: IPR009638 This family represents the eukaryotic Fez1 protein. Fez1 contains a leucine-zipper region with similarity to the DNA-binding domain of the cAMP-responsive activating-transcription factor 5 []. There is evidence that Fez1 inhibits cancer cell growth through regulation of mitosis, and that its alterations result in abnormal cell growth []. Note that some family members contain more than one copy of this region.; GO: 0005737 cytoplasm, 0016020 membrane
Probab=54.48 E-value=1.2e+02 Score=30.95 Aligned_cols=18 Identities=22% Similarity=0.134 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHHHHhccc
Q 007579 513 NEALTAEVRRLKVATQEM 530 (597)
Q Consensus 513 nEaLkeEVqrLK~a~gEi 530 (597)
...|..|+..|+.....+
T Consensus 89 l~~le~El~~Lr~~l~~~ 106 (202)
T PF06818_consen 89 LGQLEAELAELREELACA 106 (202)
T ss_pred hhhhHHHHHHHHHHHHhh
Confidence 445566788888877765
No 459
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=54.28 E-value=2.4e+02 Score=33.90 Aligned_cols=66 Identities=17% Similarity=0.372 Sum_probs=37.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 007579 457 ISELEHKVQTLQTEATTLSAQLTLLQRDSVGLTNQNNELKFRLQAMEQQAQLRDALNEALTAEVRRLKVATQE 529 (597)
Q Consensus 457 IeELE~KVq~LQtEN~tLsaQLtlLqre~~~L~aEN~ELK~RLqaLEqQaqLrdALnEaLkeEVqrLK~a~gE 529 (597)
|+.++.++..-..|...|..++ ..+..+..+++.+|..|...+.-++...+.|..||++|+.-+.+
T Consensus 289 ~d~~~~eL~rk~~E~~~~qt~l-------~~~~~~~~d~r~hi~~lkesl~~ke~~~~~Lqsdve~Lr~rle~ 354 (775)
T PF10174_consen 289 MDRLKLELSRKKSELEALQTRL-------ETLEEQDSDMRQHIEVLKESLRAKEQEAEMLQSDVEALRFRLEE 354 (775)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-------HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 5555555554444444444444 44455555556666666555555566666666666666665554
No 460
>PF14661 HAUS6_N: HAUS augmin-like complex subunit 6 N-terminus
Probab=54.23 E-value=1.7e+02 Score=29.73 Aligned_cols=39 Identities=21% Similarity=0.178 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007579 454 MRYISELEHKVQT---LQTEATTLSAQLTLLQRDSVGLTNQN 492 (597)
Q Consensus 454 KqYIeELE~KVq~---LQtEN~tLsaQLtlLqre~~~L~aEN 492 (597)
..|+..|++++.. ++..+..|..++..|.++...+..+.
T Consensus 167 ~~~~~~~~~~~~~~~~~~~~aq~L~~k~r~l~~~~~~~~~~~ 208 (247)
T PF14661_consen 167 NSFLQILQEKDAARQKYQEFAQLLRKKYRELSAECAELQAQL 208 (247)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3444444444444 44444445555544444444444433
No 461
>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants. The function of this family is unknown.
Probab=54.17 E-value=1.3e+02 Score=36.13 Aligned_cols=50 Identities=26% Similarity=0.377 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007579 458 SELEHKVQTLQTEATTLSAQLTLLQRDSVGLTNQNNELKFRLQAMEQQAQ 507 (597)
Q Consensus 458 eELE~KVq~LQtEN~tLsaQLtlLqre~~~L~aEN~ELK~RLqaLEqQaq 507 (597)
.+|+.+++.|+.+-..|...+...+.++..+..+-.++...|..|..++.
T Consensus 592 ~el~eelE~le~eK~~Le~~L~~~~d~lE~~~~qL~E~E~~L~eLq~eL~ 641 (769)
T PF05911_consen 592 KELEEELEKLESEKEELEMELASCQDQLESLKNQLKESEQKLEELQSELE 641 (769)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444444444444444444444444433333
No 462
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms. Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.
Probab=54.12 E-value=1.8e+02 Score=31.72 Aligned_cols=93 Identities=14% Similarity=0.195 Sum_probs=0.0
Q ss_pred ChHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007579 432 DPKRAKRILANRQSAARSKERKMRYISELEHKVQTLQTEATTLSAQLTLLQRDSVGLTNQNNELKFRLQAMEQQAQLRDA 511 (597)
Q Consensus 432 DpKR~KRILaNRESAaRSReRKKqYIeELE~KVq~LQtEN~tLsaQLtlLqre~~~L~aEN~ELK~RLqaLEqQaqLrdA 511 (597)
|--+.--.|..||..--. .++.|-.+...++.+.+++..+...+......++.+..+|..+|+.+.++..-+..
T Consensus 249 ~i~~~lekI~sREk~iN~------qle~l~~eYr~~~~~ls~~~~~y~~~s~~V~~~t~~L~~IseeLe~vK~emeerg~ 322 (359)
T PF10498_consen 249 DISKTLEKIESREKYINN------QLEPLIQEYRSAQDELSEVQEKYKQASEGVSERTRELAEISEELEQVKQEMEERGS 322 (359)
T ss_pred HHHHHHHHHHHHHHHHHH------HhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q ss_pred H-------------HHHHHHHHHHHHHHhccc
Q 007579 512 L-------------NEALTAEVRRLKVATQEM 530 (597)
Q Consensus 512 L-------------nEaLkeEVqrLK~a~gEi 530 (597)
- ...|++||..|-+-+|-+
T Consensus 323 ~mtD~sPlv~IKqAl~kLk~EI~qMdvrIGVl 354 (359)
T PF10498_consen 323 SMTDGSPLVKIKQALTKLKQEIKQMDVRIGVL 354 (359)
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHhhhhhhee
No 463
>PF04999 FtsL: Cell division protein FtsL; InterPro: IPR007082 In Escherichia coli, nine gene products are known to be essential for assembly of the division septum. One of these, FtsL, is a bitopic membrane protein whose precise function is not understood. It has been proposed that FtsL interacts with the DivIC protein IPR007060 from INTERPRO [], however this interaction may be indirect [].; GO: 0007049 cell cycle, 0016021 integral to membrane
Probab=54.01 E-value=54 Score=28.35 Aligned_cols=38 Identities=16% Similarity=0.346 Sum_probs=27.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007579 468 QTEATTLSAQLTLLQRDSVGLTNQNNELKFRLQAMEQQ 505 (597)
Q Consensus 468 QtEN~tLsaQLtlLqre~~~L~aEN~ELK~RLqaLEqQ 505 (597)
..+...+..++..++++...|..||..|+.++..+..-
T Consensus 34 ~~~~~~~~~~l~~l~~~~~~l~~e~~~L~lE~~~l~~~ 71 (97)
T PF04999_consen 34 RHQSRQLFYELQQLEKEIDQLQEENERLRLEIATLSSP 71 (97)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCH
Confidence 34556677777788888888888888888887777444
No 464
>PF08606 Prp19: Prp19/Pso4-like; InterPro: IPR013915 This region is found specifically in PRP19-like protein. The region represented by this protein covers the sequence implicated in self-interaction and a coiled-coiled motif []. PRP19-like proteins form an oligomer that is necessary for spliceosome assembly [].
Probab=53.93 E-value=77 Score=27.66 Aligned_cols=57 Identities=25% Similarity=0.237 Sum_probs=39.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HH---HHHHHHHHHHHHHHHhccc
Q 007579 474 LSAQLTLLQRDSVGLTNQNNELKFRLQAMEQQAQLR----DA---LNEALTAEVRRLKVATQEM 530 (597)
Q Consensus 474 LsaQLtlLqre~~~L~aEN~ELK~RLqaLEqQaqLr----dA---LnEaLkeEVqrLK~a~gEi 530 (597)
+-.-+..|+.+.+.++-|+-+|+++|..+.+++-.. || +.-.|.+|...++.++.++
T Consensus 6 IP~lL~~lQnEWDa~mLE~f~LRk~l~~~rqELs~aLYq~DAA~RViArl~kErd~ar~~l~~l 69 (70)
T PF08606_consen 6 IPSLLSTLQNEWDALMLENFTLRKQLDQTRQELSHALYQHDAACRVIARLLKERDEAREALAEL 69 (70)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhHHHHHHHHHhc
Confidence 344577899999999999999999998886663221 21 2444556777777666543
No 465
>KOG0963 consensus Transcription factor/CCAAT displacement protein CDP1 [Transcription]
Probab=53.73 E-value=1.9e+02 Score=34.07 Aligned_cols=39 Identities=18% Similarity=0.209 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007579 487 GLTNQNNELKFRLQAMEQQAQLRDALNEALTAEVRRLKVA 526 (597)
Q Consensus 487 ~L~aEN~ELK~RLqaLEqQaqLrdALnEaLkeEVqrLK~a 526 (597)
.|..+++.++.-|..|+.+++-+ ...+.+++|+..||..
T Consensus 321 ~le~~l~~~~~~leel~~kL~~~-sDYeeIK~ELsiLk~i 359 (629)
T KOG0963|consen 321 ALEKELKAKISELEELKEKLNSR-SDYEEIKKELSILKAI 359 (629)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhh-ccHHHHHHHHHHHHHh
Confidence 34444444444444444444443 5577888898888864
No 466
>PF09486 HrpB7: Bacterial type III secretion protein (HrpB7); InterPro: IPR013392 This entry represents proteins encoded by genes which are found in type III secretion operons in a narrow range of species including Xanthomonas, Burkholderia and Ralstonia.
Probab=53.70 E-value=1.5e+02 Score=29.13 Aligned_cols=30 Identities=27% Similarity=0.429 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007579 455 RYISELEHKVQTLQTEATTLSAQLTLLQRD 484 (597)
Q Consensus 455 qYIeELE~KVq~LQtEN~tLsaQLtlLqre 484 (597)
.|...|+.++..++.+...|...|.....+
T Consensus 79 ~~r~~l~~~~~~~e~~~a~l~~~l~~~~~~ 108 (158)
T PF09486_consen 79 RYRDVLEERVRAAEAELAALRQALRAAEDE 108 (158)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555555555444444443333
No 467
>KOG2129 consensus Uncharacterized conserved protein H4 [Function unknown]
Probab=53.67 E-value=35 Score=38.47 Aligned_cols=40 Identities=20% Similarity=0.299 Sum_probs=29.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007579 458 SELEHKVQTLQTEATTLSAQLTLLQRDSVGLTNQNNELKF 497 (597)
Q Consensus 458 eELE~KVq~LQtEN~tLsaQLtlLqre~~~L~aEN~ELK~ 497 (597)
++|-.+|..|+.+|..|+.++..+.-.+..|+.||+-|+.
T Consensus 46 e~l~~rv~slsq~Nkvlk~elet~k~kcki~qeenr~l~~ 85 (552)
T KOG2129|consen 46 ESLGARVSSLSQRNKVLKGELETLKGKCKIMQEENRPLLL 85 (552)
T ss_pred HHHHHHHHHHHhhhhhhhhhHHhhhhHHHHHHhcCchhhh
Confidence 5566667777777777777777777777777777777664
No 468
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=53.61 E-value=81 Score=36.04 Aligned_cols=30 Identities=23% Similarity=0.287 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007579 457 ISELEHKVQTLQTEATTLSAQLTLLQRDSV 486 (597)
Q Consensus 457 IeELE~KVq~LQtEN~tLsaQLtlLqre~~ 486 (597)
...++.+++.|+.+...|..++..|+.+..
T Consensus 558 ~~~~~~~~~~~e~~i~~le~~~~~l~~~l~ 587 (638)
T PRK10636 558 TQPLRKEIARLEKEMEKLNAQLAQAEEKLG 587 (638)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 466777888888888888888888887654
No 469
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=53.54 E-value=1.2e+02 Score=34.42 Aligned_cols=11 Identities=18% Similarity=0.395 Sum_probs=5.2
Q ss_pred HHHHHHHhccc
Q 007579 520 VRRLKVATQEM 530 (597)
Q Consensus 520 VqrLK~a~gEi 530 (597)
+++++..+.++
T Consensus 420 L~~~~~~L~~i 430 (569)
T PRK04778 420 LERYRNKLHEI 430 (569)
T ss_pred HHHHHHHHHHH
Confidence 34455554444
No 470
>PRK11091 aerobic respiration control sensor protein ArcB; Provisional
Probab=53.53 E-value=1.8e+02 Score=33.15 Aligned_cols=61 Identities=20% Similarity=0.177 Sum_probs=32.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007579 452 RKMRYISELEHKVQTLQTEATTLSAQLTLLQRDSVGLTNQNNELKFRLQAMEQQAQLRDAL 512 (597)
Q Consensus 452 RKKqYIeELE~KVq~LQtEN~tLsaQLtlLqre~~~L~aEN~ELK~RLqaLEqQaqLrdAL 512 (597)
+-.....+|+.+++.|..+.....+....+......|..+..+.+...++++++......+
T Consensus 100 ~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~L~~~i~~r~~~~~~l~~~~~~l~~i 160 (779)
T PRK11091 100 RDLELNVQLKDNIAQLNQEIAEREKAEEARQEAFEQLKNEIKEREETQIELEQQSSLLRSF 160 (779)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334455556666666666555544444444555556666666665555565554444433
No 471
>PF07889 DUF1664: Protein of unknown function (DUF1664); InterPro: IPR012458 The members of this family are hypothetical plant proteins of unknown function. The region featured in this family is approximately 100 amino acids long.
Probab=53.37 E-value=1.9e+02 Score=27.48 Aligned_cols=52 Identities=10% Similarity=0.247 Sum_probs=34.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007579 454 MRYISELEHKVQTLQTEATTLSAQLTLLQRDSVGLTNQNNELKFRLQAMEQQ 505 (597)
Q Consensus 454 KqYIeELE~KVq~LQtEN~tLsaQLtlLqre~~~L~aEN~ELK~RLqaLEqQ 505 (597)
.+.|+.|..++....+-...+..++..++.+...+..+-..+...+..|+..
T Consensus 67 sqRId~vd~klDe~~ei~~~i~~eV~~v~~dv~~i~~dv~~v~~~V~~Le~k 118 (126)
T PF07889_consen 67 SQRIDRVDDKLDEQKEISKQIKDEVTEVREDVSQIGDDVDSVQQMVEGLEGK 118 (126)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Confidence 3556677777777666666677777777776666666666666666666544
No 472
>KOG3878 consensus Protein involved in maintenance of Golgi structure and ER-Golgi transport [Intracellular trafficking, secretion, and vesicular transport]
Probab=53.36 E-value=1.4e+02 Score=33.22 Aligned_cols=9 Identities=56% Similarity=0.833 Sum_probs=4.4
Q ss_pred HHHHHHHHH
Q 007579 506 AQLRDALNE 514 (597)
Q Consensus 506 aqLrdALnE 514 (597)
.+|.+|||.
T Consensus 173 ~Qiq~ALN~ 181 (469)
T KOG3878|consen 173 RQIQDALNK 181 (469)
T ss_pred HHHHHHHhH
Confidence 445555553
No 473
>PF04728 LPP: Lipoprotein leucine-zipper; InterPro: IPR006817 This repeating sequence, NAKVDQLSNDV, is found in the enterobacterial outer membrane lipoprotein LPP. The outer membrane lipoprotein is the most abundant protein in an Escherichia coli cell. The messenger RNA for the lipoprotein of the E. coli outer membrane codes for a putative precursor, prolipoprotein, which has 20 additional amino acid residues extending from the amino terminus of the lipoprotein.; GO: 0019867 outer membrane; PDB: 1JCC_A 2GUV_C 2GUS_A 1JCD_A 1KFM_A 1T8Z_D 1KFN_A 1EQ7_A.
Probab=53.22 E-value=1.1e+02 Score=25.77 Aligned_cols=32 Identities=22% Similarity=0.356 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007579 462 HKVQTLQTEATTLSAQLTLLQRDSVGLTNQNN 493 (597)
Q Consensus 462 ~KVq~LQtEN~tLsaQLtlLqre~~~L~aEN~ 493 (597)
.||..|..+..+|..+|..|..+...|..+-.
T Consensus 3 akid~Ls~dVq~L~~kvdqLs~dv~~lr~~v~ 34 (56)
T PF04728_consen 3 AKIDQLSSDVQTLNSKVDQLSSDVNALRADVQ 34 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666666666666666666555555544443
No 474
>KOG1003 consensus Actin filament-coating protein tropomyosin [Cytoskeleton]
Probab=53.19 E-value=1e+02 Score=31.70 Aligned_cols=71 Identities=23% Similarity=0.281 Sum_probs=39.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 007579 458 SELEHKVQTLQTEATTLSAQLTLLQRDSVGLTNQNNELKFRLQAMEQQAQLRDALNEALTAEVRRLKVATQ 528 (597)
Q Consensus 458 eELE~KVq~LQtEN~tLsaQLtlLqre~~~L~aEN~ELK~RLqaLEqQaqLrdALnEaLkeEVqrLK~a~g 528 (597)
.+|+..+..+.+.+..|......+.........+.+.|..+|-.-+..+.+...-...|.+++.+|...+.
T Consensus 112 ~eLeEe~~~~~~nlk~l~~~ee~~~q~~d~~e~~ik~ltdKLkEaE~rAE~aERsVakLeke~DdlE~kl~ 182 (205)
T KOG1003|consen 112 EELEEDLRILDSNLKSLSAKEEKLEQKEEKYEEELKELTDKLKEAETRAEFAERRVAKLEKERDDLEEKLE 182 (205)
T ss_pred HHHHHHHHHhHhHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHcccHHHHHHhhH
Confidence 45555555555555666666555555555555666666655555544444444444555555555554443
No 475
>PRK06975 bifunctional uroporphyrinogen-III synthetase/uroporphyrin-III C-methyltransferase; Reviewed
Probab=52.80 E-value=1.8e+02 Score=33.91 Aligned_cols=13 Identities=23% Similarity=0.373 Sum_probs=5.6
Q ss_pred HHHHHHHHHHHHH
Q 007579 513 NEALTAEVRRLKV 525 (597)
Q Consensus 513 nEaLkeEVqrLK~ 525 (597)
++++-+|++.|-.
T Consensus 416 ~dW~laEae~Ll~ 428 (656)
T PRK06975 416 DDWMIAEVEQMLS 428 (656)
T ss_pred hhhHHHHHHHHHH
Confidence 3444444444433
No 476
>PF04859 DUF641: Plant protein of unknown function (DUF641); InterPro: IPR006943 This conserved region is found in a number of plant proteins of unknown function.
Probab=52.78 E-value=43 Score=31.93 Aligned_cols=10 Identities=30% Similarity=0.325 Sum_probs=3.6
Q ss_pred HHHHHHHHHH
Q 007579 486 VGLTNQNNEL 495 (597)
Q Consensus 486 ~~L~aEN~EL 495 (597)
..+...|..|
T Consensus 118 ~~~~~~n~~L 127 (131)
T PF04859_consen 118 DELNRANKSL 127 (131)
T ss_pred HHHHHHHHHh
Confidence 3333333333
No 477
>cd07667 BAR_SNX30 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 30. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. The specific function of SNX30 is still unknown. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=52.74 E-value=2.7e+02 Score=29.07 Aligned_cols=72 Identities=11% Similarity=0.125 Sum_probs=32.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHH
Q 007579 446 AARSKERKMRYISELEHKVQTLQTEATTLSAQLTLLQRDSVGLTNQNNELKFRLQAMEQQ--AQLRDALNEALTAEV 520 (597)
Q Consensus 446 AaRSReRKKqYIeELE~KVq~LQtEN~tLsaQLtlLqre~~~L~aEN~ELK~RLqaLEqQ--aqLrdALnEaLkeEV 520 (597)
..|.|+-|+.-.++|+..+..-..+...|..+|..++... ..-|++++..+...+.. ..+++++.+.....|
T Consensus 151 vlK~RdqkQ~d~E~l~E~l~~rre~~~kLe~~ie~~~~~v---e~f~~~~~~E~~~Fe~~K~~e~k~~l~~~Ad~~i 224 (240)
T cd07667 151 VLKKRDQVQAEYEAKLEAVALRKEERPKVPTDVEKCQDRV---ECFNADLKADMERWQNNKRQDFRQLLMGMADKNI 224 (240)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455566666555555544322333333444444444332 44455555555444322 344444444443333
No 478
>KOG2991 consensus Splicing regulator [RNA processing and modification]
Probab=52.58 E-value=1.5e+02 Score=31.80 Aligned_cols=78 Identities=24% Similarity=0.269 Sum_probs=44.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHH-----HHHHHHH--------HH
Q 007579 455 RYISELEHKVQTLQTEATTLSAQLTLLQRD-------SVGLTNQNNELKFRLQAMEQQ-----AQLRDAL--------NE 514 (597)
Q Consensus 455 qYIeELE~KVq~LQtEN~tLsaQLtlLqre-------~~~L~aEN~ELK~RLqaLEqQ-----aqLrdAL--------nE 514 (597)
.|..-|+..|+.|..+-..|+.++....|. ++.-+.|-.+++.+|+.|.++ +++|..+ ..
T Consensus 101 ~~~rll~d~i~nLk~se~~lkqQ~~~a~RrE~ilv~rlA~kEQEmqe~~sqi~~lK~qq~Ps~~qlR~~llDPAinl~F~ 180 (330)
T KOG2991|consen 101 KYTRLLSDDITNLKESEEKLKQQQQEAARRENILVMRLATKEQEMQECTSQIQYLKQQQQPSVAQLRSTLLDPAINLFFL 180 (330)
T ss_pred cccchhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCcHHHHHHHHhhChHHHHHHH
Confidence 444555666666666666666665555443 333344556666666666544 4455433 56
Q ss_pred HHHHHHHHHHHHhccccC
Q 007579 515 ALTAEVRRLKVATQEMAS 532 (597)
Q Consensus 515 aLkeEVqrLK~a~gEi~~ 532 (597)
.|+.|++.-+..+-|.-+
T Consensus 181 rlK~ele~tk~Klee~Qn 198 (330)
T KOG2991|consen 181 RLKGELEQTKDKLEEAQN 198 (330)
T ss_pred HHHHHHHHHHHHHHHHHh
Confidence 777888766666655544
No 479
>cd07429 Cby_like Chibby, a nuclear inhibitor of Wnt/beta-catenin mediated transcription, and similar proteins. Chibby(Cby) is a well-conserved nuclear protein that functions as part of the Wnt/beta-catenin signaling pathway. Specifically, Cby binds directly to beta-catenin by interacting with its central region, which harbors armadillo repeats. Cby-beta-catenin interactions may also involve 14-3-3 proteins. By competing with other binding partners of beta-catenin, the Tcf/Lef transcription factors, Cby inhibits transcriptional activation. Cby has been shown to play a role in adipocyte differentiation. The C-terminal region of Cby appears to contain an alpha-helical coiled-coil motif.
Probab=52.58 E-value=28 Score=32.33 Aligned_cols=22 Identities=27% Similarity=0.356 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 007579 462 HKVQTLQTEATTLSAQLTLLQR 483 (597)
Q Consensus 462 ~KVq~LQtEN~tLsaQLtlLqr 483 (597)
++.++|+.||+-|+-+++.|--
T Consensus 79 kk~~~LeEENNlLklKievLLD 100 (108)
T cd07429 79 KKNQQLEEENNLLKLKIEVLLD 100 (108)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3566777777777777766644
No 480
>COG3167 PilO Tfp pilus assembly protein PilO [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=52.50 E-value=59 Score=33.31 Aligned_cols=51 Identities=24% Similarity=0.279 Sum_probs=31.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007579 453 KMRYISELEHKVQTLQTEATTLSAQLTLLQRDSVGLTNQNNELKFRLQAMEQQAQ 507 (597)
Q Consensus 453 KKqYIeELE~KVq~LQtEN~tLsaQLtlLqre~~~L~aEN~ELK~RLqaLEqQaq 507 (597)
|+..+++||.+-++|+.+-..=..++..|+ .|..+..+++.++..|..|+-
T Consensus 47 k~eel~~~~~eEe~LKs~~q~K~~~aanL~----~lr~Ql~emee~~~~llrQLP 97 (211)
T COG3167 47 KLEELEELEAEEEELKSTYQQKAIQAANLE----ALRAQLAEMEERFDILLRQLP 97 (211)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhchH----HHHHHHHHHHHHHHHHHHhCC
Confidence 555666666666666666655555555544 356666677777777766644
No 481
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function. Several sequences in this family are described as being myosin heavy chain-like.
Probab=52.19 E-value=4e+02 Score=30.19 Aligned_cols=78 Identities=19% Similarity=0.198 Sum_probs=61.0
Q ss_pred HHhhHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007579 440 LANRQSAARSKERKM-RYISELEHKVQTLQTEATTLSAQLTLLQRDSVGLTNQNNELKFRLQAMEQQAQLRDALNEALT 517 (597)
Q Consensus 440 LaNRESAaRSReRKK-qYIeELE~KVq~LQtEN~tLsaQLtlLqre~~~L~aEN~ELK~RLqaLEqQaqLrdALnEaLk 517 (597)
++.+..+.+..+.|. .-+.+|...++.|..|....+......+.+...+..+-...|..+..++.++...-...++.+
T Consensus 349 ~r~eLea~~~~e~~~k~~~~~l~~~Lqql~~Eae~Ak~ea~~~~~E~~~~k~E~e~~ka~i~t~E~rL~aa~ke~eaaK 427 (522)
T PF05701_consen 349 TRSELEAAKAEEEKAKEAMSELPKALQQLSSEAEEAKKEAEEAKEEVEKAKEEAEQTKAAIKTAEERLEAALKEAEAAK 427 (522)
T ss_pred HHHHHHHHHhhhcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444455443 457899999999999999999999999999999999999999999999887666555555554
No 482
>PRK10476 multidrug resistance protein MdtN; Provisional
Probab=52.10 E-value=2.4e+02 Score=29.30 Aligned_cols=103 Identities=10% Similarity=0.042 Sum_probs=0.0
Q ss_pred hhccChH----HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHH
Q 007579 428 IALTDPK----RAKRILANRQSAARSKERKMRYISELEHKVQTLQTEATTLSAQLTLLQRDSVG---LTNQNNELKFRLQ 500 (597)
Q Consensus 428 lAl~DpK----R~KRILaNRESAaRSReRKKqYIeELE~KVq~LQtEN~tLsaQLtlLqre~~~---L~aEN~ELK~RLq 500 (597)
|+.+|+. ++....++...|+...++.+..+..-+..++.++.+......++...++++.. |..++-.=+.+++
T Consensus 76 L~~ld~~~~~~~l~~a~a~l~~a~a~l~~~~~~~~~~~~~~~~~~~~i~~a~~~l~~a~~~~~R~~~L~~~g~vS~~~~~ 155 (346)
T PRK10476 76 LFRIDPRPYELTVAQAQADLALADAQIMTTQRSVDAERSNAASANEQVERARANAKLATRTLERLEPLLAKGYVSAQQVD 155 (346)
T ss_pred EEEECcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCcCHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Q 007579 501 AMEQQAQLRDALNEALTAEVRRLKVATQEM 530 (597)
Q Consensus 501 aLEqQaqLrdALnEaLkeEVqrLK~a~gEi 530 (597)
..+.+.....+..+.++.+...++..+.++
T Consensus 156 ~a~~~~~~a~~~l~~a~~~~~~~~~~~~~~ 185 (346)
T PRK10476 156 QARTAQRDAEVSLNQALLQAQAAAAAVGGV 185 (346)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
No 483
>KOG0979 consensus Structural maintenance of chromosome protein SMC5/Spr18, SMC superfamily [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=52.08 E-value=1.9e+02 Score=35.86 Aligned_cols=100 Identities=13% Similarity=0.128 Sum_probs=0.0
Q ss_pred cChHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHH
Q 007579 431 TDPKRAKRILANRQSAARSKERKMRYISELEHKVQTLQTEATTLSAQLTLLQRDSVGLTNQNNELKFRLQAMEQ---QAQ 507 (597)
Q Consensus 431 ~DpKR~KRILaNRESAaRSReRKKqYIeELE~KVq~LQtEN~tLsaQLtlLqre~~~L~aEN~ELK~RLqaLEq---Qaq 507 (597)
.|+=+.+-+..--..+.+.+.|+-+.+..|-.++..++.+...|..++.....++..+..++..++.....++. ..+
T Consensus 612 ~~~lk~~~f~~~~~~l~~~~~~~ee~~~~~~~~~~~~~~~~r~lee~~~k~~k~le~~~~~~~~~~~er~~~~~~~~~~~ 691 (1072)
T KOG0979|consen 612 NDPLKSRNFFSVSPVLEELDNRIEEEIQKLKAEIDIRSSTLRELEEKKQKERKELEEEQKKLKLLKRERTKLNSELKSYQ 691 (1072)
T ss_pred CCcchhhhhhccchHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHhccc
Q 007579 508 LRDALNEALTAEVRRLKVATQEM 530 (597)
Q Consensus 508 LrdALnEaLkeEVqrLK~a~gEi 530 (597)
.+..-.|.+..++.+.+..+...
T Consensus 692 ~r~~~ie~~~~~l~~qkee~~~~ 714 (1072)
T KOG0979|consen 692 QRKERIENLVVDLDRQEEEYAAS 714 (1072)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
No 484
>PRK14474 F0F1 ATP synthase subunit B; Provisional
Probab=52.04 E-value=2.8e+02 Score=28.47 Aligned_cols=97 Identities=18% Similarity=0.178 Sum_probs=0.0
Q ss_pred hHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHH
Q 007579 433 PKRAKRILANRQSAARSKERKMRYISELEHKVQTLQTEATT-LSAQLTLLQRDSVGLTNQNNELKFRL--QAMEQQAQLR 509 (597)
Q Consensus 433 pKR~KRILaNRESAaRSReRKKqYIeELE~KVq~LQtEN~t-LsaQLtlLqre~~~L~aEN~ELK~RL--qaLEqQaqLr 509 (597)
.+|.++|..+-+.|.+.|..=++...+-+.+++.++.+... +..--...++....+..+-++=-.++ +..+.-..-+
T Consensus 35 ~eR~~~I~~~l~~Ae~~~~eA~~~~~e~e~~l~~a~~ea~~ii~~A~~eA~~~~~~il~~A~~ea~~~~~~a~~~ie~Ek 114 (250)
T PRK14474 35 KKRQQRIANRWQDAEQRQQEAGQEAERYRQKQQSLEQQRASFMAQAQEAADEQRQHLLNEAREDVATARDEWLEQLEREK 114 (250)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHhcc
Q 007579 510 DALNEALTAEVRRLKVATQE 529 (597)
Q Consensus 510 dALnEaLkeEVqrLK~a~gE 529 (597)
......|+.+|..|-+.+..
T Consensus 115 ~~a~~~L~~~v~~la~~~A~ 134 (250)
T PRK14474 115 QEFFKALQQQTGQQMVKIIR 134 (250)
T ss_pred HHHHHHHHHHHHHHHHHHHH
No 485
>PF15188 CCDC-167: Coiled-coil domain-containing protein 167
Probab=51.75 E-value=72 Score=28.60 Aligned_cols=60 Identities=23% Similarity=0.271 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007579 454 MRYISELEHKVQTLQTEATTLSAQLTLLQ---RDSVGLTNQNNELKFRLQAMEQQAQLRDALN 513 (597)
Q Consensus 454 KqYIeELE~KVq~LQtEN~tLsaQLtlLq---re~~~L~aEN~ELK~RLqaLEqQaqLrdALn 513 (597)
...|+.||.++.........+..++..-+ .+...|..|...|+.++...|.+++..+..|
T Consensus 4 ~~eId~lEekl~~cr~~le~ve~rL~~~eLs~e~R~~lE~E~~~l~~~l~~~E~eL~~LrkEN 66 (85)
T PF15188_consen 4 AKEIDGLEEKLAQCRRRLEAVESRLRRRELSPEARRSLEKELNELKEKLENNEKELKLLRKEN 66 (85)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHcccCCChHHHHHHHHHHHHHHHHhhccHHHHHHHHHhh
No 486
>PF05335 DUF745: Protein of unknown function (DUF745); InterPro: IPR007999 This family consists of several uncharacterised Drosophila melanogaster proteins of unknown function.
Probab=51.75 E-value=2.7e+02 Score=28.05 Aligned_cols=77 Identities=13% Similarity=0.132 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 007579 453 KMRYISELEHKVQTLQTEATTLSAQLTLLQRDSVGLTNQNNELKFRLQAMEQQAQLRDALNEALTAEVRRLKVATQE 529 (597)
Q Consensus 453 KKqYIeELE~KVq~LQtEN~tLsaQLtlLqre~~~L~aEN~ELK~RLqaLEqQaqLrdALnEaLkeEVqrLK~a~gE 529 (597)
|+.-++.||.+|...+.........|...+...........+.+.++..|..-++....-.+....=+......+.+
T Consensus 65 Kq~iveqLe~ev~EAe~vV~ee~~sL~~aq~na~aA~~aa~~A~~q~~~L~~~l~~a~~nl~~a~~~a~~AQ~el~e 141 (188)
T PF05335_consen 65 KQQIVEQLEQEVREAEAVVQEEKASLQQAQANAQAAQRAAQQAQQQLETLKAALKAAQANLANAEQVAEGAQQELAE 141 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 487
>PF13805 Pil1: Eisosome component PIL1; PDB: 3PLT_B.
Probab=51.60 E-value=1.9e+02 Score=30.83 Aligned_cols=85 Identities=15% Similarity=0.235 Sum_probs=0.0
Q ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHH
Q 007579 440 LANRQSAARSKERKMRYISELEHKVQTLQTEATTLSAQLTLLQRDSVGLTNQNNELKFRLQAMEQQ--AQLRDALNEALT 517 (597)
Q Consensus 440 LaNRESAaRSReRKKqYIeELE~KVq~LQtEN~tLsaQLtlLqre~~~L~aEN~ELK~RLqaLEqQ--aqLrdALnEaLk 517 (597)
|+|||.+-.-..++++-|.+-..+++.-.-+ ..+|..|++++..+++++-....+|..+..+ ..-.....++|.
T Consensus 133 IR~~E~sl~p~R~~r~~l~d~I~kLk~k~P~----s~kl~~LeqELvraEae~lvaEAqL~n~kR~~lKEa~~~~f~Al~ 208 (271)
T PF13805_consen 133 IRNREESLQPSRDRRRKLQDEIAKLKYKDPQ----SPKLVVLEQELVRAEAENLVAEAQLSNIKRQKLKEAYSLKFDALI 208 (271)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH-TT----TTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhHHHHHhHHHHHHHHHHHhcCCC----ChHHHHHHHHHHHHHHHhhHHHHHHHHhhHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHhc
Q 007579 518 AEVRRLKVATQ 528 (597)
Q Consensus 518 eEVqrLK~a~g 528 (597)
+-.+.+-....
T Consensus 209 E~aEK~~Ila~ 219 (271)
T PF13805_consen 209 ERAEKQAILAE 219 (271)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
No 488
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=51.55 E-value=2.3e+02 Score=32.16 Aligned_cols=94 Identities=15% Similarity=0.162 Sum_probs=0.0
Q ss_pred hHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007579 433 PKRAKRILANRQSAARSKERKMRYISELEHK----------VQTLQTEATTLSAQLTLLQRDSVGLTNQNNELKFRLQAM 502 (597)
Q Consensus 433 pKR~KRILaNRESAaRSReRKKqYIeELE~K----------Vq~LQtEN~tLsaQLtlLqre~~~L~aEN~ELK~RLqaL 502 (597)
.|...++...-.-+...-..=+.-++.|... +..++.+...|..++..+..........-.+++.++..+
T Consensus 309 ek~~~~l~~~l~~~~e~~~~l~~Ei~~l~~sY~l~~~e~~~~~~lekeL~~Le~~~~~~~~~i~~~~~~ysel~e~leel 388 (569)
T PRK04778 309 EKNSDTLPDFLEHAKEQNKELKEEIDRVKQSYTLNESELESVRQLEKQLESLEKQYDEITERIAEQEIAYSELQEELEEI 388 (569)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHccccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 007579 503 EQQAQLRDALNEALTAEVRRLKVA 526 (597)
Q Consensus 503 EqQaqLrdALnEaLkeEVqrLK~a 526 (597)
..++.-.......+.+.++.|+..
T Consensus 389 ~e~leeie~eq~ei~e~l~~Lrk~ 412 (569)
T PRK04778 389 LKQLEEIEKEQEKLSEMLQGLRKD 412 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
No 489
>PF12999 PRKCSH-like: Glucosidase II beta subunit-like
Probab=51.55 E-value=1e+02 Score=30.85 Aligned_cols=58 Identities=19% Similarity=0.203 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007579 448 RSKERKMRYISELEHKVQTLQTEATTLSAQLTLLQRDSVGLTNQNNELKFRLQAMEQQ 505 (597)
Q Consensus 448 RSReRKKqYIeELE~KVq~LQtEN~tLsaQLtlLqre~~~L~aEN~ELK~RLqaLEqQ 505 (597)
+.++-.++|.+.++.+.+..+.=.....+-+...++....+..+..+|+.+|++.+++
T Consensus 118 ~C~e~~~~~~~~~~~~~~~~~~G~~~r~~~i~~a~~~~~e~~~~l~~l~~ei~~~~~e 175 (176)
T PF12999_consen 118 TCAELGKEYREELEEEEEIYKEGLKIRQELIEEAKKKREELEKKLEELEKEIQAAKQE 175 (176)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
No 490
>PF14988 DUF4515: Domain of unknown function (DUF4515)
Probab=51.53 E-value=1.8e+02 Score=29.36 Aligned_cols=72 Identities=15% Similarity=0.264 Sum_probs=0.0
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007579 441 ANRQSAARSKERKMRYISELEHKVQTLQTEATTLSAQLTLLQRDSVGLTNQNNELKFRLQAMEQQAQLRDAL 512 (597)
Q Consensus 441 aNRESAaRSReRKKqYIeELE~KVq~LQtEN~tLsaQLtlLqre~~~L~aEN~ELK~RLqaLEqQaqLrdAL 512 (597)
+.++--.+...-...=+..|-.-+..+..||..|+.++..|.+++..|...+..|..+-+.|.++.-+.++|
T Consensus 135 a~~el~~k~~ale~~A~~~l~e~~~~i~~EN~~L~k~L~~l~~e~~~L~~~~~~Le~qk~~L~~eq~~~e~L 206 (206)
T PF14988_consen 135 AHKELKKKAQALELAAKKSLDEFTRSIKRENQQLRKELLQLIQEAQKLEARKSQLEKQKQQLQQEQWYLESL 206 (206)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
No 491
>KOG4370 consensus Ral-GTPase effector RLIP76 [Signal transduction mechanisms]
Probab=51.50 E-value=54 Score=37.08 Aligned_cols=58 Identities=28% Similarity=0.259 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 007579 472 TTLSAQLTLLQRDSVGLTNQNNELKFRLQAMEQQAQLRDALNEALTAEVRRLKVATQE 529 (597)
Q Consensus 472 ~tLsaQLtlLqre~~~L~aEN~ELK~RLqaLEqQaqLrdALnEaLkeEVqrLK~a~gE 529 (597)
..|...+..|++++.+|+..+++|++++.+....+.-...+.+.+..|-+.-+.+.++
T Consensus 409 ~el~e~le~Lq~Q~eeL~e~~n~l~qrI~eer~~v~~lkql~~~~q~e~t~ak~~~qe 466 (514)
T KOG4370|consen 409 EELQEILELLQRQNEELEEKVNHLNQRIAEERERVIELKQLVNLLQEENTNAKQQFQE 466 (514)
T ss_pred hhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhhhhhhcc
No 492
>PF12808 Mto2_bdg: Micro-tubular organiser Mto1 C-term Mto2-binding region; InterPro: IPR024545 This domain occurs at the C terminus of microtubule organising proteins in both budding and fission fungi. In Schizosaccharomyces pombe it has been shown to interact with the Mto2p protein, an interaction which is critical for anchoring the cytokinetic actin ring to the medial region of the cell and for proper coordination of mitosis with cytokinesis [, ].
Probab=51.50 E-value=39 Score=27.79 Aligned_cols=47 Identities=19% Similarity=0.275 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007579 452 RKMRYISELEHKVQTLQ----TEATTLSAQLTLLQRDSVGLTNQNNELKFR 498 (597)
Q Consensus 452 RKKqYIeELE~KVq~LQ----tEN~tLsaQLtlLqre~~~L~aEN~ELK~R 498 (597)
||+..|+|||.+++.-. .+......+|..|+.++..|.++.+-++.+
T Consensus 1 kw~~Rl~ELe~klkaerE~R~~d~~~a~~rl~~l~~EN~~Lr~eL~~~r~~ 51 (52)
T PF12808_consen 1 KWLLRLEELERKLKAEREARSLDRSAARKRLSKLEGENRLLRAELERLRSR 51 (52)
T ss_pred CHHHHHHHHHHHHHHhHHhccCCchhHHHHHHHHHHHHHHHHHHHHHHhhc
No 493
>PF13863 DUF4200: Domain of unknown function (DUF4200)
Probab=51.40 E-value=1.1e+02 Score=27.22 Aligned_cols=59 Identities=19% Similarity=0.296 Sum_probs=0.0
Q ss_pred HHHhhhccChHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007579 424 KLAEIALTDPKRAKRILANRQSAARSKERKMRYISELEHKVQTLQTEATTLSAQLTLLQ 482 (597)
Q Consensus 424 kLaElAl~DpKR~KRILaNRESAaRSReRKKqYIeELE~KVq~LQtEN~tLsaQLtlLq 482 (597)
+..........+..|-++.-+.+.+.+..|..-|..|..++..|+.++..|..+|..+.
T Consensus 50 ~f~~flken~~k~~rA~k~a~~e~k~~~~k~~ei~~l~~~l~~l~~~~~k~e~~l~~~~ 108 (126)
T PF13863_consen 50 KFDKFLKENEAKRERAEKRAEEEKKKKEEKEAEIKKLKAELEELKSEISKLEEKLEEYK 108 (126)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 494
>PF13815 Dzip-like_N: Iguana/Dzip1-like DAZ-interacting protein N-terminal
Probab=51.39 E-value=1.2e+02 Score=27.58 Aligned_cols=93 Identities=14% Similarity=0.087 Sum_probs=0.0
Q ss_pred hhccChHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007579 428 IALTDPKRAKRILANRQSAARSKERKMRYISELEHKV-QTLQTEATTLSAQLTLLQRDSVGLTNQNNELKFRLQAMEQQA 506 (597)
Q Consensus 428 lAl~DpKR~KRILaNRESAaRSReRKKqYIeELE~KV-q~LQtEN~tLsaQLtlLqre~~~L~aEN~ELK~RLqaLEqQa 506 (597)
....|-......+.|---|.-..+....++...=.++ ..+|--...|-.--..|......|..++..+...++.++...
T Consensus 24 ~~~~Di~~Lq~~i~~vtf~~l~~e~~~~~~dp~~~klfrLaQl~ieYLl~~q~~L~~~~~~l~~~~~~~~~~~~~l~~~~ 103 (118)
T PF13815_consen 24 VRELDIDTLQENIENVTFCDLENEDCQHFVDPNFLKLFRLAQLSIEYLLHCQEYLSSQLEQLEERLQELQQEIEKLKQKL 103 (118)
T ss_pred HhccCHHHHHHHHHhcceeccChhhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHH
Q 007579 507 QLRDALNEALTAEV 520 (597)
Q Consensus 507 qLrdALnEaLkeEV 520 (597)
.-.......|++|+
T Consensus 104 ~~~~~~~k~lk~E~ 117 (118)
T PF13815_consen 104 KKQKEEIKKLKKES 117 (118)
T ss_pred HHHHHHHHHHHHhc
No 495
>COG1322 Predicted nuclease of restriction endonuclease-like fold, RmuC family [General function prediction only]
Probab=51.38 E-value=3e+02 Score=31.09 Aligned_cols=85 Identities=21% Similarity=0.203 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHH
Q 007579 443 RQSAARSKERKMRYISELEHKVQTLQTEATTLSAQLTLLQRDSVGLTNQNNELKFRL------QAMEQQAQLRDALNEAL 516 (597)
Q Consensus 443 RESAaRSReRKKqYIeELE~KVq~LQtEN~tLsaQLtlLqre~~~L~aEN~ELK~RL------qaLEqQaqLrdALnEaL 516 (597)
|..++.-++.+..-+.+|++-...|+........|+..+.+....|..+..++..++ ..-+........+...+
T Consensus 58 ~~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~eq~~~l~~~~~ql~~~~~~~~~~i~e~~~~~~~el~~~~~~~Ll~~~ 137 (448)
T COG1322 58 RTFARSLQALNLELIQELNELKARLQQQLLQSREQLQLLIESLAQLSSEFQELANEIFEELNRRLAELNQQNLKQLLKPL 137 (448)
T ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHh
Q 007579 517 TAEVRRLKVAT 527 (597)
Q Consensus 517 keEVqrLK~a~ 527 (597)
++..+.|+..+
T Consensus 138 ~~~~e~f~e~l 148 (448)
T COG1322 138 REVLEKFREQL 148 (448)
T ss_pred HHHHHHHHHHH
No 496
>PF07028 DUF1319: Protein of unknown function (DUF1319); InterPro: IPR010746 This entry is represented by Commelina yellow mottle virus, Orf1. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This family contains a number of viral proteins of unknown function approximately 200 residues long. Family members seem to be restricted to badnaviruses.
Probab=51.34 E-value=2.3e+02 Score=27.24 Aligned_cols=80 Identities=18% Similarity=0.325 Sum_probs=0.0
Q ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHH
Q 007579 440 LANRQSAARSKERKMRYISELEHKVQTLQTEATTLSAQLTLLQRDSVGLTNQ--------NNELKFRLQAMEQQAQLRDA 511 (597)
Q Consensus 440 LaNRESAaRSReRKKqYIeELE~KVq~LQtEN~tLsaQLtlLqre~~~L~aE--------N~ELK~RLqaLEqQaqLrdA 511 (597)
|.+|. +-.+...-+.++..-++..+++...|..++..|.++...|..+ ..+.+.=...+.+|-++.+.
T Consensus 35 L~~KV----~~~~~~~~lk~~~ki~~~Qr~~l~~l~~~l~~l~~eL~~Lr~~~l~rRPLtk~dVeeLV~~IseQPK~IEk 110 (126)
T PF07028_consen 35 LGSKV----SQKKLLEELKNLSKIQESQRSELKELKQELDVLSKELQALRKEYLERRPLTKEDVEELVLRISEQPKFIEK 110 (126)
T ss_pred HHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhCcHHHHH
Q ss_pred HHHHHHHHHHHH
Q 007579 512 LNEALTAEVRRL 523 (597)
Q Consensus 512 LnEaLkeEVqrL 523 (597)
..++|++|+...
T Consensus 111 Qte~LteEL~kk 122 (126)
T PF07028_consen 111 QTEALTEELTKK 122 (126)
T ss_pred HHHHHHHHHHHH
No 497
>PF01486 K-box: K-box region; InterPro: IPR002487 MADS genes in plants encode key developmental regulators of vegetative and reproductive development. The majority of the plant MADS proteins share a stereotypical MIKC structure. It comprises (from N- to C-terminal) an N-terminal domain, which is, however, present only in a minority of proteins; a MADS domain (see PDOC00302 from PROSITEDOC, IPR002100 from INTERPRO), which is the major determinant of DNA-binding but which also performs dimerisation and accessory factor binding functions; a weakly conserved intervening (I) domain, which constitutes a key molecular determinant for the selective formation of DNA-binding dimers; a keratin-like (K-box) domain, which promotes protein dimerisation; and a C-terminal (C) domain, which is involved in transcriptional activation or in the formation of ternary or quaternary protein complexes. The 80-amino acid K-box domain was originally identified as a region with low but significant similarity to a region of keratin, which is part of the coiled-coil sequence constituting the central rod-shaped domain of keratin [, , ]. The K-box protein-protein interaction domain which mediates heterodimerization of MIKC-type MADS proteins contains several heptad repeats in which the first and the fourth positions are occupied by hydrophobic amino acids suggesting that the K-box domain forms three amphipathic alpha-helices referred to as K1, K2, and K3 [].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=51.29 E-value=59 Score=28.50 Aligned_cols=70 Identities=26% Similarity=0.386 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHH-HHHHHHH-----HHHHHHHHHHHHHHHHHHHHHhccc
Q 007579 461 EHKVQTLQTEATTLSAQLTLLQRDSVGLT-NQNNELKFR-LQAMEQQ-----AQLRDALNEALTAEVRRLKVATQEM 530 (597)
Q Consensus 461 E~KVq~LQtEN~tLsaQLtlLqre~~~L~-aEN~ELK~R-LqaLEqQ-----aqLrdALnEaLkeEVqrLK~a~gEi 530 (597)
...++.++.|...|+.++..|+.....++ .....|... |+.||++ .++|..-.+.+..++..|+.....+
T Consensus 11 ~~~~e~~~~e~~~L~~~~~~L~~~~R~~~GedL~~Ls~~eL~~LE~~Le~aL~~VR~rK~~~l~~~i~~l~~ke~~l 87 (100)
T PF01486_consen 11 DSQHEELQQEIAKLRKENESLQKELRHLMGEDLESLSLKELQQLEQQLESALKRVRSRKDQLLMEQIEELKKKEREL 87 (100)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccchHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
No 498
>PF10359 Fmp27_WPPW: RNA pol II promoter Fmp27 protein domain; InterPro: IPR019449 The function of the FMP27 protein is not known. FMP27 is the product of a nuclear encoded gene but it is detected in highly purified mitochondria in high-throughput studies []. This entry represents a domain within FMP27 that contains characteristic HQR and WPPW sequence motifs.
Probab=51.26 E-value=64 Score=35.85 Aligned_cols=65 Identities=17% Similarity=0.166 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007579 461 EHKVQTLQTEATTLSAQLTLLQRDSVGLTN--QNNELKFRLQAMEQQAQLRDALNEALTAEVRRLKV 525 (597)
Q Consensus 461 E~KVq~LQtEN~tLsaQLtlLqre~~~L~a--EN~ELK~RLqaLEqQaqLrdALnEaLkeEVqrLK~ 525 (597)
+.+++.++....+|.+++..+++....+.. ...+++.+++.++.+......-.+.|...+++|+.
T Consensus 162 ~vQ~~L~~~Rl~~L~~qi~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~l~~~l~~l~~ 228 (475)
T PF10359_consen 162 RVQIELIQERLDELEEQIEKHEEKLGELELNPDDPELKSDIEELERHISSLKERIEFLENMLEDLED 228 (475)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
No 499
>PF10212 TTKRSYEDQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019348 This entry represents a C-terminal 500 residue region, which contains a conserved TTKRSYEDQ motif. It is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain an N-terminal domain with a KLRAQ motif (IPR019343 from INTERPRO). The function of these proteins is not known.
Probab=51.22 E-value=1.8e+02 Score=33.59 Aligned_cols=76 Identities=13% Similarity=0.234 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHH
Q 007579 455 RYISELEHKVQTLQTEATTLSAQLTLLQRDSVGLTNQNNELKFRLQAMEQQ--------AQLRDALNEALTAEVRRLKVA 526 (597)
Q Consensus 455 qYIeELE~KVq~LQtEN~tLsaQLtlLqre~~~L~aEN~ELK~RLqaLEqQ--------aqLrdALnEaLkeEVqrLK~a 526 (597)
..+...+.|+..+..|+..|..++...+++...+..|.++++.++..|+++ ......+.|.|-.=.++|...
T Consensus 427 ~qlQ~adSKa~~f~~Ec~aL~~rL~~aE~ek~~l~eeL~~a~~~i~~LqDEL~TTr~NYE~QLs~MSEHLasmNeqL~~Q 506 (518)
T PF10212_consen 427 SQLQHADSKAVHFYAECRALQKRLESAEKEKESLEEELKEANQNISRLQDELETTRRNYEEQLSMMSEHLASMNEQLAKQ 506 (518)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred hccc
Q 007579 527 TQEM 530 (597)
Q Consensus 527 ~gEi 530 (597)
..+|
T Consensus 507 ~eeI 510 (518)
T PF10212_consen 507 REEI 510 (518)
T ss_pred HHHH
No 500
>PRK10698 phage shock protein PspA; Provisional
Probab=51.18 E-value=2.8e+02 Score=28.10 Aligned_cols=87 Identities=21% Similarity=0.252 Sum_probs=0.0
Q ss_pred hccChHHHHHHHHhhHHHHHHHHHHHHHHHH----------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007579 429 ALTDPKRAKRILANRQSAARSKERKMRYISE----------------LEHKVQTLQTEATTLSAQLTLLQRDSVGLTNQN 492 (597)
Q Consensus 429 Al~DpKR~KRILaNRESAaRSReRKKqYIeE----------------LE~KVq~LQtEN~tLsaQLtlLqre~~~L~aEN 492 (597)
+..+.|+..|.+..-+....-+.+|-+--.. .+.++..|+.+.......+..|+.....|...-
T Consensus 50 ~~A~~k~~er~~~~~~~~~~~~e~kA~~Al~~G~EdLAr~AL~~K~~~~~~~~~l~~~~~~~~~~~~~L~~~l~~L~~ki 129 (222)
T PRK10698 50 ALAEKKQLTRRIEQAEAQQVEWQEKAELALRKEKEDLARAALIEKQKLTDLIATLEHEVTLVDETLARMKKEIGELENKL 129 (222)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 007579 493 NELKFRLQAMEQQAQLRDALNEA 515 (597)
Q Consensus 493 ~ELK~RLqaLEqQaqLrdALnEa 515 (597)
.++|.+-..|..+.+...+....
T Consensus 130 ~eak~k~~~L~aR~~~A~a~~~~ 152 (222)
T PRK10698 130 SETRARQQALMLRHQAASSSRDV 152 (222)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Done!