Query 007579
Match_columns 597
No_of_seqs 220 out of 699
Neff 3.1
Searched_HMMs 29240
Date Mon Mar 25 05:18:00 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007579.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/007579hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1dh3_A Transcription factor CR 99.4 1.2E-13 4.2E-18 108.9 6.6 52 434-485 1-52 (55)
2 2wt7_A Proto-oncogene protein 99.2 2.5E-11 8.7E-16 97.4 9.5 57 433-489 1-57 (63)
3 1t2k_D Cyclic-AMP-dependent tr 99.2 4.2E-11 1.4E-15 95.2 9.1 56 434-489 1-56 (61)
4 1jnm_A Proto-oncogene C-JUN; B 99.1 3E-10 1E-14 90.7 7.5 55 434-488 1-55 (62)
5 2dgc_A Protein (GCN4); basic d 98.9 1.2E-09 4.2E-14 88.2 6.8 53 432-485 8-60 (63)
6 1ci6_A Transcription factor AT 98.8 8.3E-09 2.9E-13 83.1 7.2 56 434-489 2-57 (63)
7 1gd2_E Transcription factor PA 98.8 9.2E-09 3.2E-13 85.1 7.2 65 432-496 6-70 (70)
8 1gu4_A CAAT/enhancer binding p 98.4 2.1E-06 7.2E-11 72.3 9.8 58 431-488 12-69 (78)
9 1hjb_A Ccaat/enhancer binding 98.3 2.2E-06 7.6E-11 73.5 9.8 55 431-485 12-66 (87)
10 3a5t_A Transcription factor MA 98.0 1.8E-07 6.1E-12 83.0 -4.3 65 432-503 35-99 (107)
11 2wt7_B Transcription factor MA 98.0 3.4E-05 1.2E-09 66.8 9.5 64 432-502 25-88 (90)
12 2oqq_A Transcription factor HY 97.1 0.00085 2.9E-08 51.1 5.6 35 454-488 2-36 (42)
13 2jee_A YIIU; FTSZ, septum, coi 96.5 0.045 1.5E-06 46.7 12.2 51 455-505 6-56 (81)
14 1skn_P DNA-binding domain of S 95.6 0.0033 1.1E-07 54.7 1.2 49 414-462 42-90 (92)
15 3oja_B Anopheles plasmodium-re 95.3 0.22 7.4E-06 52.2 13.9 78 458-535 512-589 (597)
16 3oja_B Anopheles plasmodium-re 95.2 0.31 1.1E-05 51.0 14.8 75 458-532 505-579 (597)
17 3s4r_A Vimentin; alpha-helix, 94.6 0.38 1.3E-05 41.4 11.1 65 462-526 23-92 (93)
18 3hnw_A Uncharacterized protein 94.3 0.29 9.8E-06 44.8 10.4 58 451-508 71-128 (138)
19 2jee_A YIIU; FTSZ, septum, coi 94.1 0.51 1.7E-05 40.3 10.6 46 457-502 22-67 (81)
20 3na7_A HP0958; flagellar bioge 93.8 1.6 5.5E-05 42.4 15.1 11 516-526 155-165 (256)
21 2w6a_A ARF GTPase-activating p 93.0 0.34 1.2E-05 39.6 7.4 40 458-497 23-62 (63)
22 3u1c_A Tropomyosin alpha-1 cha 92.5 4.8 0.00017 34.7 15.1 46 455-500 23-68 (101)
23 3cve_A Homer protein homolog 1 92.4 1.8 6.2E-05 36.2 11.2 50 458-507 3-52 (72)
24 2dfs_A Myosin-5A; myosin-V, in 92.3 2.4 8.1E-05 49.5 16.2 12 264-275 704-715 (1080)
25 3cvf_A Homer-3, homer protein 92.2 0.91 3.1E-05 38.6 9.4 53 457-509 8-60 (79)
26 3ol1_A Vimentin; structural ge 92.1 2.3 7.9E-05 37.7 12.4 37 474-510 67-103 (119)
27 3vkg_A Dynein heavy chain, cyt 92.1 0.91 3.1E-05 58.4 13.3 63 461-523 2027-2089(3245)
28 2v71_A Nuclear distribution pr 91.9 1.9 6.4E-05 41.7 12.4 28 478-505 90-117 (189)
29 3u59_A Tropomyosin beta chain; 91.9 5.6 0.00019 34.1 15.1 78 450-527 18-95 (101)
30 3mq9_A Bone marrow stromal ant 91.8 3.8 0.00013 42.0 15.4 65 457-524 406-470 (471)
31 2dfs_A Myosin-5A; myosin-V, in 91.7 1.6 5.5E-05 50.9 13.9 31 470-500 985-1015(1080)
32 1i84_S Smooth muscle myosin he 91.1 1.4 4.8E-05 51.3 12.6 23 2-24 175-197 (1184)
33 1wle_A Seryl-tRNA synthetase; 91.1 2.8 9.7E-05 45.2 14.1 81 457-537 72-163 (501)
34 3a7p_A Autophagy protein 16; c 90.7 0.87 3E-05 42.8 8.5 50 456-505 69-118 (152)
35 2v71_A Nuclear distribution pr 90.5 3.4 0.00011 39.9 12.5 75 457-531 90-174 (189)
36 3o0z_A RHO-associated protein 90.3 6.4 0.00022 37.5 14.1 80 449-530 30-116 (168)
37 1go4_E MAD1 (mitotic arrest de 90.1 2.3 7.9E-05 37.5 10.1 70 456-532 13-96 (100)
38 3u1c_A Tropomyosin alpha-1 cha 90.0 8.8 0.0003 33.1 15.4 73 451-523 26-98 (101)
39 3qh9_A Liprin-beta-2; coiled-c 89.8 3 0.0001 35.7 10.2 63 458-520 15-77 (81)
40 3a7p_A Autophagy protein 16; c 89.7 3.1 0.00011 39.2 11.3 39 462-500 96-134 (152)
41 3efg_A Protein SLYX homolog; x 89.7 0.73 2.5E-05 38.6 6.4 50 455-504 14-63 (78)
42 3hnw_A Uncharacterized protein 89.5 2.6 9E-05 38.5 10.5 48 456-503 83-130 (138)
43 3s9g_A Protein hexim1; cyclin 89.4 1.4 4.9E-05 39.1 8.3 40 458-497 40-86 (104)
44 3qne_A Seryl-tRNA synthetase, 88.9 2.9 9.8E-05 45.2 11.9 71 461-538 46-119 (485)
45 3ghg_A Fibrinogen alpha chain; 88.9 1.4 4.6E-05 48.5 9.4 19 510-528 137-155 (562)
46 2dq0_A Seryl-tRNA synthetase; 88.3 5.7 0.00019 42.2 13.5 103 432-538 10-117 (455)
47 2ocy_A RAB guanine nucleotide 87.5 17 0.00059 34.1 14.8 71 460-532 77-150 (154)
48 2oqq_A Transcription factor HY 87.5 1.6 5.5E-05 33.4 6.4 36 464-499 5-40 (42)
49 1ses_A Seryl-tRNA synthetase; 87.4 5.8 0.0002 41.6 12.9 102 432-538 10-112 (421)
50 3na7_A HP0958; flagellar bioge 87.4 20 0.00067 34.8 15.8 11 543-553 204-214 (256)
51 3cvf_A Homer-3, homer protein 87.2 1.2 4.1E-05 37.8 6.2 54 467-527 4-57 (79)
52 3m9b_A Proteasome-associated A 87.0 0.67 2.3E-05 46.5 5.3 14 512-525 83-96 (251)
53 3swy_A Cyclic nucleotide-gated 87.0 2.8 9.7E-05 32.4 7.6 44 459-505 2-45 (46)
54 3tnu_B Keratin, type II cytosk 86.6 9.6 0.00033 33.8 12.0 27 457-483 38-64 (129)
55 1deq_A Fibrinogen (alpha chain 86.6 4.3 0.00015 43.0 11.2 46 487-533 117-162 (390)
56 2ve7_C Kinetochore protein NUF 85.7 0.94 3.2E-05 44.7 5.6 40 428-467 114-153 (250)
57 3swf_A CGMP-gated cation chann 85.5 2.5 8.4E-05 35.7 7.1 47 458-507 3-49 (74)
58 1deb_A APC protein, adenomatou 85.5 4.4 0.00015 32.3 8.1 44 457-500 5-48 (54)
59 3tnu_B Keratin, type II cytosk 85.4 5 0.00017 35.6 9.6 28 457-484 45-72 (129)
60 3q8t_A Beclin-1; autophagy, AT 85.1 18 0.0006 31.2 13.9 73 452-524 22-94 (96)
61 3jsv_C NF-kappa-B essential mo 85.1 5.6 0.00019 34.9 9.4 66 440-505 8-76 (94)
62 3he5_A Synzip1; heterodimeric 84.9 3.3 0.00011 31.9 7.0 21 457-477 5-25 (49)
63 3bas_A Myosin heavy chain, str 84.8 17 0.00057 30.7 13.0 48 457-504 37-84 (89)
64 3swk_A Vimentin; cytoskeleton, 84.8 6.1 0.00021 33.4 9.4 68 458-525 3-84 (86)
65 3mq7_A Bone marrow stromal ant 83.9 4.5 0.00015 36.8 8.6 35 493-527 74-108 (121)
66 1wle_A Seryl-tRNA synthetase; 83.8 9.5 0.00032 41.2 12.6 47 460-506 82-139 (501)
67 3i00_A HIP-I, huntingtin-inter 83.7 15 0.0005 33.1 11.9 17 454-470 39-55 (120)
68 3tnu_A Keratin, type I cytoske 83.6 9.4 0.00032 34.0 10.6 26 457-482 40-65 (131)
69 3bas_A Myosin heavy chain, str 83.5 8.2 0.00028 32.6 9.6 72 453-524 12-83 (89)
70 1hjb_A Ccaat/enhancer binding 83.3 9.3 0.00032 32.8 9.9 41 479-533 39-79 (87)
71 2oxj_A Hybrid alpha/beta pepti 83.2 1.4 4.8E-05 32.4 4.1 28 456-483 2-29 (34)
72 4ath_A MITF, microphthalmia-as 83.2 4 0.00014 35.0 7.6 44 454-508 38-81 (83)
73 3oja_A Leucine-rich immune mol 82.6 12 0.00041 38.5 12.4 37 469-505 428-464 (487)
74 3tnu_A Keratin, type I cytoske 82.4 5.8 0.0002 35.3 8.7 29 456-484 46-74 (131)
75 3m48_A General control protein 82.3 1.4 4.7E-05 32.3 3.7 27 457-483 2-28 (33)
76 3u59_A Tropomyosin beta chain; 82.3 23 0.00078 30.3 15.4 70 454-523 29-98 (101)
77 3q8t_A Beclin-1; autophagy, AT 82.3 19 0.00064 31.0 11.5 49 457-505 6-54 (96)
78 2v4h_A NF-kappa-B essential mo 82.0 14 0.00049 33.2 10.9 61 442-502 32-95 (110)
79 3cve_A Homer protein homolog 1 81.9 6.1 0.00021 33.1 8.0 41 484-524 8-48 (72)
80 2oto_A M protein; helical coil 81.8 21 0.00072 32.4 12.4 27 459-485 54-80 (155)
81 1nkp_B MAX protein, MYC proto- 81.7 1.6 5.5E-05 35.9 4.5 29 454-482 46-74 (83)
82 4etp_A Kinesin-like protein KA 81.3 4.2 0.00014 42.5 8.5 48 473-527 14-61 (403)
83 2v66_B Nuclear distribution pr 81.0 30 0.001 30.9 14.0 49 457-505 37-85 (111)
84 3o0z_A RHO-associated protein 80.9 39 0.0013 32.2 15.3 58 441-505 76-133 (168)
85 3ghg_A Fibrinogen alpha chain; 80.9 5 0.00017 44.1 9.1 50 447-496 102-151 (562)
86 1gu4_A CAAT/enhancer binding p 80.7 11 0.00037 31.7 9.2 21 480-500 40-60 (78)
87 1go4_E MAD1 (mitotic arrest de 80.3 2.5 8.7E-05 37.3 5.5 16 486-501 78-93 (100)
88 1kd8_B GABH BLL, GCN4 acid bas 80.2 2.4 8.3E-05 31.5 4.5 29 456-484 2-30 (36)
89 2dq0_A Seryl-tRNA synthetase; 80.1 11 0.00039 39.9 11.4 34 462-495 31-64 (455)
90 2v4h_A NF-kappa-B essential mo 80.0 26 0.00088 31.5 11.8 13 513-525 85-97 (110)
91 3c3f_A Alpha/beta peptide with 79.7 2.2 7.6E-05 31.3 4.1 28 456-483 2-29 (34)
92 3vkg_A Dynein heavy chain, cyt 79.7 24 0.00084 46.0 15.9 30 476-505 2014-2043(3245)
93 1ci6_A Transcription factor AT 79.7 4.7 0.00016 32.2 6.4 30 476-505 23-52 (63)
94 3u06_A Protein claret segregat 79.2 4.8 0.00016 42.3 8.2 56 465-527 6-61 (412)
95 4emc_A Monopolin complex subun 79.0 8.1 0.00028 37.5 9.0 45 455-506 13-57 (190)
96 3c3g_A Alpha/beta peptide with 78.4 3.4 0.00012 30.2 4.7 27 457-483 2-28 (33)
97 1gd2_E Transcription factor PA 78.1 4.5 0.00015 33.5 6.0 34 472-505 32-65 (70)
98 1kd8_A GABH AIV, GCN4 acid bas 78.1 2.2 7.6E-05 31.7 3.7 28 457-484 3-30 (36)
99 1nlw_A MAD protein, MAX dimeri 77.6 3.9 0.00013 34.1 5.6 32 453-484 45-76 (80)
100 3qne_A Seryl-tRNA synthetase, 77.4 8.7 0.0003 41.5 9.7 55 432-490 14-68 (485)
101 2dq3_A Seryl-tRNA synthetase; 77.4 5 0.00017 42.1 7.7 97 432-538 10-116 (425)
102 2yy0_A C-MYC-binding protein; 77.2 4.1 0.00014 31.9 5.3 21 479-499 29-49 (53)
103 4ati_A MITF, microphthalmia-as 76.9 0.87 3E-05 40.5 1.6 23 485-507 93-115 (118)
104 4h22_A Leucine-rich repeat fli 76.6 15 0.00052 32.7 9.3 13 430-442 6-18 (103)
105 3mq9_A Bone marrow stromal ant 76.6 18 0.0006 37.1 11.3 71 455-528 397-467 (471)
106 1ik9_A DNA repair protein XRCC 76.5 28 0.00097 33.7 12.1 66 457-525 141-207 (213)
107 1m1j_C Fibrinogen gamma chain; 76.4 29 0.00098 36.8 13.0 27 505-531 106-132 (409)
108 1ic2_A Tropomyosin alpha chain 76.4 31 0.0011 28.4 11.5 48 458-505 9-56 (81)
109 2wt7_B Transcription factor MA 76.3 4.9 0.00017 34.8 6.0 17 486-502 51-67 (90)
110 3a7o_A Autophagy protein 16; c 76.2 9 0.00031 32.3 7.3 43 462-504 32-74 (75)
111 3m0d_C TNF receptor-associated 75.9 28 0.00095 27.9 10.0 32 453-484 4-35 (65)
112 3he5_A Synzip1; heterodimeric 75.8 12 0.00041 28.8 7.3 44 478-528 5-48 (49)
113 2bni_A General control protein 75.6 3.2 0.00011 30.5 3.9 28 456-483 2-29 (34)
114 2wq1_A General control protein 75.6 4.5 0.00015 29.6 4.7 27 457-483 2-28 (33)
115 3mq7_A Bone marrow stromal ant 75.4 37 0.0013 30.9 11.6 10 518-527 92-101 (121)
116 1f5n_A Interferon-induced guan 75.1 36 0.0012 37.4 13.9 77 448-528 505-584 (592)
117 3oja_A Leucine-rich immune mol 75.0 30 0.001 35.5 12.6 11 514-524 452-462 (487)
118 2fxo_A Myosin heavy chain, car 74.9 45 0.0015 29.6 15.7 48 483-530 76-123 (129)
119 1m1j_B Fibrinogen beta chain; 74.6 26 0.0009 37.8 12.4 24 506-529 170-193 (464)
120 2efr_A General control protein 74.6 41 0.0014 31.5 12.2 14 511-524 140-153 (155)
121 2w83_C C-JUN-amino-terminal ki 74.5 23 0.00078 30.2 9.4 42 461-502 8-56 (77)
122 2hy6_A General control protein 74.5 3.5 0.00012 30.3 3.9 28 456-483 2-29 (34)
123 2oa5_A Hypothetical protein BQ 74.2 4.9 0.00017 36.1 5.6 24 456-479 9-32 (110)
124 1t2k_D Cyclic-AMP-dependent tr 74.2 8.7 0.0003 30.1 6.5 28 477-504 23-50 (61)
125 2v66_B Nuclear distribution pr 74.2 49 0.0017 29.6 12.4 30 476-505 35-64 (111)
126 2kz5_A Transcription factor NF 74.1 0.17 5.8E-06 44.1 -3.6 43 414-456 46-88 (91)
127 3i00_A HIP-I, huntingtin-inter 74.1 29 0.00098 31.2 10.6 68 455-525 15-82 (120)
128 3vmx_A Voltage-gated hydrogen 73.5 13 0.00043 29.2 7.0 36 461-496 3-38 (48)
129 3s84_A Apolipoprotein A-IV; fo 73.3 41 0.0014 33.5 12.7 85 443-530 164-250 (273)
130 1wlq_A Geminin; coiled-coil; 2 73.1 21 0.00073 30.7 9.0 31 467-497 36-66 (83)
131 1uo4_A General control protein 73.0 4 0.00014 30.0 3.9 27 457-483 3-29 (34)
132 1fmh_A General control protein 72.9 6 0.0002 28.4 4.7 28 457-484 3-30 (33)
133 2efr_A General control protein 72.7 53 0.0018 30.7 12.4 36 488-523 75-110 (155)
134 2oto_A M protein; helical coil 72.3 45 0.0015 30.2 11.7 44 460-503 34-77 (155)
135 1ses_A Seryl-tRNA synthetase; 71.8 16 0.00054 38.3 9.7 20 486-505 67-86 (421)
136 1nkp_A C-MYC, MYC proto-oncoge 71.3 9.5 0.00033 32.2 6.5 21 454-474 51-71 (88)
137 3lss_A Seryl-tRNA synthetase; 71.2 27 0.00094 37.7 11.6 40 499-538 113-152 (484)
138 2xnx_M M protein, M1-BC1; cell 71.0 18 0.0006 34.0 8.7 53 478-530 82-134 (146)
139 2eqb_B RAB guanine nucleotide 70.5 51 0.0017 29.0 11.0 47 456-502 13-59 (97)
140 3nmd_A CGMP dependent protein 70.0 12 0.0004 31.5 6.6 34 492-525 35-68 (72)
141 2lw1_A ABC transporter ATP-bin 69.7 29 0.00099 28.9 9.1 49 455-503 22-76 (89)
142 2wvr_A Geminin; DNA replicatio 69.7 19 0.00066 35.4 9.0 33 468-500 114-146 (209)
143 3a2a_A Voltage-gated hydrogen 69.7 11 0.00038 30.4 6.1 35 461-495 10-44 (58)
144 1ic2_A Tropomyosin alpha chain 69.3 46 0.0016 27.3 10.6 47 454-500 19-65 (81)
145 2xdj_A Uncharacterized protein 68.9 50 0.0017 28.0 10.4 43 457-499 22-64 (83)
146 3m9b_A Proteasome-associated A 68.8 6.3 0.00022 39.6 5.7 27 458-484 57-83 (251)
147 3trt_A Vimentin; cytoskeleton, 68.6 24 0.00082 28.4 8.1 14 489-502 55-68 (77)
148 1am9_A Srebp-1A, protein (ster 68.5 6.9 0.00024 32.5 5.0 25 454-478 49-73 (82)
149 3q0x_A Centriole protein; cent 68.4 21 0.00073 35.3 9.2 58 430-493 159-216 (228)
150 2ocy_A RAB guanine nucleotide 67.7 55 0.0019 30.7 11.4 48 456-503 45-92 (154)
151 2yy0_A C-MYC-binding protein; 67.4 9.1 0.00031 30.0 5.1 27 464-490 21-47 (53)
152 3lss_A Seryl-tRNA synthetase; 67.4 23 0.0008 38.2 10.0 10 493-502 114-123 (484)
153 1m1j_A Fibrinogen alpha subuni 67.3 1.2E+02 0.0042 33.1 15.3 25 504-528 132-156 (491)
154 3efg_A Protein SLYX homolog; x 67.1 14 0.00049 30.8 6.6 45 458-502 10-54 (78)
155 4etp_A Kinesin-like protein KA 66.6 18 0.00061 37.8 8.8 48 455-502 10-57 (403)
156 4emc_A Monopolin complex subun 66.3 42 0.0014 32.7 10.5 61 456-516 21-81 (190)
157 2xdj_A Uncharacterized protein 66.3 38 0.0013 28.7 9.1 32 471-502 22-53 (83)
158 3s4r_A Vimentin; alpha-helix, 65.6 30 0.001 29.6 8.5 43 484-528 24-66 (93)
159 1jnm_A Proto-oncogene C-JUN; B 65.5 6.9 0.00023 30.9 4.2 28 477-504 23-50 (62)
160 1t6f_A Geminin; coiled-coil, c 65.5 11 0.00036 28.2 4.8 28 469-496 7-34 (37)
161 1jcd_A Major outer membrane li 65.5 32 0.0011 27.1 7.9 27 457-483 6-32 (52)
162 2ke4_A CDC42-interacting prote 64.5 27 0.00092 30.3 8.1 28 455-482 22-49 (98)
163 2wt7_A Proto-oncogene protein 64.1 52 0.0018 26.0 9.5 29 477-505 24-52 (63)
164 2c9l_Y EB1, zebra, BZLF1 trans 63.6 32 0.0011 27.9 7.7 23 440-462 7-29 (63)
165 2oxj_A Hybrid alpha/beta pepti 63.6 10 0.00034 27.9 4.3 16 513-528 17-32 (34)
166 3s9g_A Protein hexim1; cyclin 63.4 75 0.0026 28.3 10.7 52 467-525 35-86 (104)
167 3uux_B Mitochondrial division 63.2 77 0.0026 31.8 12.0 46 457-502 179-224 (242)
168 2j5u_A MREC protein; bacterial 63.2 3.9 0.00013 40.2 2.9 41 485-529 21-61 (255)
169 1zme_C Proline utilization tra 62.8 6.2 0.00021 30.4 3.4 25 454-478 43-67 (70)
170 1l8d_A DNA double-strand break 62.8 69 0.0023 27.0 11.6 6 459-464 35-40 (112)
171 3ol1_A Vimentin; structural ge 62.4 82 0.0028 27.7 15.0 43 485-527 64-106 (119)
172 1deq_A Fibrinogen (alpha chain 62.4 32 0.0011 36.6 9.6 66 434-499 91-157 (390)
173 2dq3_A Seryl-tRNA synthetase; 61.9 9.4 0.00032 40.0 5.7 53 441-494 9-62 (425)
174 3nmd_A CGMP dependent protein 61.8 29 0.00098 29.2 7.4 29 453-481 38-66 (72)
175 3jsv_C NF-kappa-B essential mo 61.7 70 0.0024 28.1 10.1 39 490-528 40-78 (94)
176 1joc_A EEA1, early endosomal a 61.5 42 0.0015 29.7 9.0 24 458-481 14-37 (125)
177 1dip_A Delta-sleep-inducing pe 61.4 7.8 0.00027 32.9 4.0 28 471-498 17-44 (78)
178 2eqb_B RAB guanine nucleotide 61.2 39 0.0013 29.7 8.5 40 460-499 24-63 (97)
179 2dgc_A Protein (GCN4); basic d 60.4 12 0.00041 30.0 4.8 23 480-502 34-56 (63)
180 2zxx_A Geminin; coiled-coil, c 60.0 18 0.00062 30.8 6.0 32 468-499 33-64 (79)
181 3htk_A Structural maintenance 59.8 46 0.0016 25.4 7.9 9 457-465 14-22 (60)
182 3m48_A General control protein 59.7 11 0.00038 27.6 4.0 16 513-528 16-31 (33)
183 3swk_A Vimentin; cytoskeleton, 59.4 29 0.001 29.2 7.2 59 471-529 2-60 (86)
184 3c3f_A Alpha/beta peptide with 58.7 14 0.00047 27.2 4.3 17 513-529 17-33 (34)
185 1s1c_X RHO-associated, coiled- 58.3 81 0.0028 26.4 10.5 32 459-490 3-34 (71)
186 3ghg_C Fibrinogen gamma chain; 58.1 93 0.0032 33.2 12.4 30 503-532 104-133 (411)
187 3htk_A Structural maintenance 58.1 60 0.0021 24.8 8.8 45 458-502 8-52 (60)
188 4e61_A Protein BIM1; EB1-like 57.9 45 0.0015 29.7 8.4 49 471-523 6-54 (106)
189 1a93_B MAX protein, coiled coi 57.8 14 0.00047 27.2 4.2 27 476-502 7-33 (34)
190 2wuj_A Septum site-determining 57.4 9.8 0.00033 29.9 3.7 28 455-482 27-54 (57)
191 1dip_A Delta-sleep-inducing pe 56.8 8.2 0.00028 32.8 3.3 17 491-507 16-32 (78)
192 2r2v_A GCN4 leucine zipper; co 56.8 18 0.00061 26.6 4.7 27 457-483 3-29 (34)
193 2i1j_A Moesin; FERM, coiled-co 56.7 8.7 0.0003 41.8 4.5 27 498-524 420-446 (575)
194 4gkw_A Spindle assembly abnorm 56.1 1.3E+02 0.0045 28.1 11.6 77 456-532 47-140 (167)
195 2zqm_A Prefoldin beta subunit 56.1 37 0.0013 28.6 7.4 14 452-465 31-44 (117)
196 1ik9_A DNA repair protein XRCC 56.0 1.3E+02 0.0046 29.0 12.2 38 459-496 136-173 (213)
197 3c3g_A Alpha/beta peptide with 55.3 17 0.00059 26.6 4.3 17 513-529 16-32 (33)
198 2b9c_A Striated-muscle alpha t 55.0 1.3E+02 0.0044 27.7 13.7 65 432-502 35-99 (147)
199 1dh3_A Transcription factor CR 54.5 15 0.0005 28.8 4.3 26 478-503 24-49 (55)
200 3cl3_D NF-kappa-B essential mo 54.2 19 0.00064 33.2 5.5 18 490-507 55-72 (130)
201 3t98_B Nucleoporin NUP58/NUP45 53.9 82 0.0028 27.1 9.2 18 508-525 62-79 (93)
202 3mov_A Lamin-B1; LMNB1, B-type 53.6 26 0.00088 30.2 6.0 25 477-501 38-62 (95)
203 3u06_A Protein claret segregat 53.1 38 0.0013 35.6 8.4 44 459-502 14-57 (412)
204 2hy6_A General control protein 53.1 17 0.00058 26.8 4.0 17 513-529 17-33 (34)
205 3m91_A Proteasome-associated A 52.6 52 0.0018 25.8 7.0 35 467-501 14-48 (51)
206 3bbp_D GRIP and coiled-coil do 52.5 12 0.00042 31.3 3.7 46 458-503 18-63 (71)
207 3trt_A Vimentin; cytoskeleton, 52.3 89 0.003 25.0 9.3 40 457-496 37-76 (77)
208 3uux_B Mitochondrial division 52.3 31 0.0011 34.6 7.2 57 457-520 165-221 (242)
209 3iox_A AGI/II, PA; alpha helix 51.8 1.9E+02 0.0064 31.7 13.6 28 460-487 32-59 (497)
210 2er8_A Regulatory protein Leu3 51.8 7.5 0.00026 30.3 2.3 23 453-475 47-69 (72)
211 2bni_A General control protein 51.7 18 0.00061 26.7 3.9 17 513-529 17-33 (34)
212 3k29_A Putative uncharacterize 51.7 1.7E+02 0.0058 28.0 16.1 45 414-460 19-63 (169)
213 1lwu_C Fibrinogen gamma chain; 51.4 39 0.0013 34.8 8.0 39 464-502 7-45 (323)
214 2e7s_A RAB guanine nucleotide 50.8 16 0.00054 33.8 4.5 32 495-526 101-132 (135)
215 1uix_A RHO-associated kinase; 50.8 78 0.0027 26.5 8.2 34 460-493 2-35 (71)
216 4fla_A Regulation of nuclear P 50.6 1.6E+02 0.0053 27.3 11.2 45 456-500 73-117 (152)
217 1nkp_B MAX protein, MYC proto- 50.5 26 0.00089 28.7 5.4 22 479-500 57-78 (83)
218 1uii_A Geminin; human, DNA rep 50.0 93 0.0032 26.8 8.8 32 468-499 45-76 (83)
219 3qwe_A GMIP, GEM-interacting p 49.1 2.2E+02 0.0077 28.7 15.2 28 474-501 182-209 (279)
220 3iv1_A Tumor susceptibility ge 48.9 1.2E+02 0.0042 25.6 11.3 48 470-517 19-66 (78)
221 1wt6_A Myotonin-protein kinase 48.7 1.3E+02 0.0044 25.8 10.2 16 442-457 14-29 (81)
222 1fmh_A General control protein 48.4 21 0.00073 25.6 3.9 28 478-505 3-30 (33)
223 2dnx_A Syntaxin-12; snare, HAB 48.4 57 0.002 28.9 7.7 31 458-488 47-77 (130)
224 2wuj_A Septum site-determining 48.2 14 0.00049 28.9 3.3 28 478-505 29-56 (57)
225 1j1d_B Troponin T, TNT; THIN f 47.9 1.4E+02 0.0049 26.3 10.0 18 467-484 47-64 (106)
226 2no2_A HIP-I, huntingtin-inter 47.7 1.4E+02 0.0049 26.1 13.6 22 447-468 21-42 (107)
227 1jcd_A Major outer membrane li 47.6 91 0.0031 24.6 7.7 29 462-490 4-32 (52)
228 2nrj_A HBL B protein; enteroto 47.6 71 0.0024 32.7 9.2 79 451-532 119-197 (346)
229 2wq1_A General control protein 47.5 27 0.00094 25.5 4.3 17 513-529 16-32 (33)
230 3r84_A Mediator of RNA polymer 46.9 1.1E+02 0.0037 26.3 8.8 66 457-529 10-76 (86)
231 4fm3_A Uncharacterized hypothe 46.5 1.2E+02 0.0041 26.6 9.2 70 407-506 23-94 (98)
232 2j5u_A MREC protein; bacterial 46.2 9.6 0.00033 37.4 2.5 9 488-496 48-56 (255)
233 1gk4_A Vimentin; intermediate 46.0 1.3E+02 0.0043 25.0 10.0 18 482-499 32-49 (84)
234 1ytz_T Troponin T; muscle, THI 45.4 1.6E+02 0.0055 26.0 10.9 46 443-488 16-68 (107)
235 1m1j_A Fibrinogen alpha subuni 45.4 1.5E+02 0.0053 32.3 11.6 67 434-507 89-156 (491)
236 1p9i_A Cortexillin I/GCN4 hybr 45.4 19 0.00066 25.5 3.2 17 486-502 9-25 (31)
237 3gp4_A Transcriptional regulat 45.3 1.7E+02 0.0056 26.1 11.5 33 410-443 40-72 (142)
238 2ve7_A Kinetochore protein HEC 45.3 27 0.00092 35.3 5.7 30 461-490 184-213 (315)
239 1kd8_B GABH BLL, GCN4 acid bas 45.2 27 0.00093 26.0 4.1 14 515-528 19-32 (36)
240 2fxo_A Myosin heavy chain, car 45.1 1.6E+02 0.0056 25.9 15.7 42 482-523 68-109 (129)
241 4dk0_A Putative MACA; alpha-ha 44.7 1.1E+02 0.0038 29.8 9.8 15 513-527 138-152 (369)
242 2fic_A Bridging integrator 1; 44.7 2E+02 0.0069 26.9 13.5 26 474-502 184-209 (251)
243 1uo4_A General control protein 44.6 29 0.00099 25.6 4.1 16 513-528 17-32 (34)
244 2odv_A Plectin 1, HD1; plakin 44.5 1.1E+02 0.0038 29.8 9.6 35 433-467 102-136 (235)
245 2xu6_A MDV1 coiled coil; prote 44.0 44 0.0015 28.1 5.8 43 457-499 23-65 (72)
246 1hlo_A Protein (transcription 43.9 18 0.00062 29.5 3.4 22 454-475 56-77 (80)
247 3e98_A GAF domain of unknown f 43.7 72 0.0025 31.2 8.3 47 457-507 67-113 (252)
248 3q0x_A Centriole protein; cent 43.2 94 0.0032 30.7 8.9 42 465-506 167-208 (228)
249 4b4t_K 26S protease regulatory 43.0 33 0.0011 36.1 6.1 55 464-525 37-91 (428)
250 4b4t_K 26S protease regulatory 42.8 37 0.0013 35.7 6.4 29 457-485 44-72 (428)
251 2xnx_M M protein, M1-BC1; cell 42.2 1.7E+02 0.0058 27.5 9.9 58 459-523 37-106 (146)
252 2b9c_A Striated-muscle alpha t 42.1 2.1E+02 0.0071 26.3 11.5 48 457-504 75-122 (147)
253 1f5n_A Interferon-induced guan 42.1 3.3E+02 0.011 29.9 13.9 14 260-273 289-302 (592)
254 1nlw_A MAD protein, MAX dimeri 42.0 48 0.0016 27.5 5.8 27 474-500 52-78 (80)
255 3vp9_A General transcriptional 41.6 46 0.0016 29.0 5.7 15 514-528 71-85 (92)
256 1fxk_C Protein (prefoldin); ar 41.2 80 0.0027 27.4 7.4 10 402-411 72-81 (133)
257 3fpp_A Macrolide-specific effl 41.0 1.7E+02 0.006 28.2 10.5 13 513-525 130-142 (341)
258 3he4_A Synzip6; heterodimeric 40.9 35 0.0012 26.9 4.4 33 457-489 19-51 (56)
259 2i1j_A Moesin; FERM, coiled-co 39.9 41 0.0014 36.6 6.4 40 457-496 337-376 (575)
260 3ra3_B P2F; coiled coil domain 39.6 29 0.001 24.2 3.3 17 467-483 5-21 (28)
261 2zvf_A Alanyl-tRNA synthetase; 39.4 73 0.0025 28.4 7.0 23 459-481 29-51 (171)
262 1p9i_A Cortexillin I/GCN4 hybr 39.4 27 0.00091 24.8 3.2 25 458-482 2-26 (31)
263 2ve7_C Kinetochore protein NUF 39.2 12 0.0004 37.0 1.9 47 443-489 136-182 (250)
264 1h7c_A Tubulin-specific chaper 38.9 1.7E+02 0.0059 25.6 9.1 34 494-527 49-82 (108)
265 3c9i_A Tail needle protein GP2 38.8 2.7E+02 0.0091 27.8 11.2 49 458-506 87-135 (242)
266 3oa7_A Head morphogenesis prot 38.8 91 0.0031 30.6 7.9 42 464-505 32-73 (206)
267 1lrz_A FEMA, factor essential 38.5 84 0.0029 32.1 8.2 24 455-478 247-270 (426)
268 3viq_B Mating-type switching p 37.9 1.7E+02 0.0059 25.1 8.6 23 459-481 5-27 (85)
269 2p22_C Protein SRN2; endosome, 36.7 2.9E+02 0.0098 26.4 12.5 79 401-485 28-109 (192)
270 2r2v_A GCN4 leucine zipper; co 36.5 48 0.0016 24.4 4.2 17 513-529 17-33 (34)
271 4b4t_M 26S protease regulatory 36.4 26 0.00091 36.9 4.2 11 461-471 31-41 (434)
272 3m0a_A TNF receptor-associated 36.3 1.5E+02 0.0052 23.1 10.2 30 497-526 33-62 (66)
273 4fla_A Regulation of nuclear P 36.3 2.6E+02 0.009 25.8 13.3 62 441-502 65-126 (152)
274 1kd8_A GABH AIV, GCN4 acid bas 36.2 32 0.0011 25.6 3.3 13 516-528 20-32 (36)
275 1joc_A EEA1, early endosomal a 35.8 1.8E+02 0.0062 25.6 8.9 18 468-485 17-34 (125)
276 3plt_A Sphingolipid long chain 35.5 1.5E+02 0.005 29.6 9.0 91 426-516 102-194 (234)
277 2zqm_A Prefoldin beta subunit 35.3 2E+02 0.0067 24.0 12.6 35 495-529 75-109 (117)
278 1wt6_A Myotonin-protein kinase 35.1 2.2E+02 0.0074 24.5 9.1 17 513-529 54-70 (81)
279 3a2a_A Voltage-gated hydrogen 35.1 72 0.0024 25.8 5.4 31 483-513 11-41 (58)
280 4dk0_A Putative MACA; alpha-ha 35.0 1.6E+02 0.0054 28.7 9.2 27 494-520 126-152 (369)
281 1gk6_A Vimentin; intermediate 34.4 1E+02 0.0034 24.3 6.2 32 459-490 4-35 (59)
282 3ghg_B Fibrinogen beta chain; 34.3 2.7E+02 0.0092 30.2 11.4 32 501-532 160-191 (461)
283 2oa5_A Hypothetical protein BQ 34.1 1.1E+02 0.0037 27.6 7.0 24 478-501 10-33 (110)
284 2akf_A Coronin-1A; coiled coil 33.8 48 0.0016 23.9 3.8 24 459-482 3-26 (32)
285 1am9_A Srebp-1A, protein (ster 33.7 1.5E+02 0.0053 24.3 7.5 21 444-464 12-32 (82)
286 1fxk_C Protein (prefoldin); ar 33.5 1.6E+02 0.0055 25.5 8.1 10 404-413 54-63 (133)
287 1nkp_A C-MYC, MYC proto-oncoge 33.1 1.2E+02 0.004 25.5 6.8 18 485-502 68-85 (88)
288 1zxa_A CGMP-dependent protein 33.1 58 0.002 26.9 4.8 32 452-483 22-53 (67)
289 2ke4_A CDC42-interacting prote 32.9 2.4E+02 0.0083 24.4 9.2 21 510-530 68-88 (98)
290 2jmh_A BLO T 5, mite allergen 32.8 1.5E+02 0.0051 27.0 7.8 37 457-499 21-57 (119)
291 1qvr_A CLPB protein; coiled co 32.7 1.9E+02 0.0064 32.3 10.3 40 433-474 378-420 (854)
292 4ad8_A DNA repair protein RECN 32.2 4.5E+02 0.016 27.3 14.8 34 435-468 187-220 (517)
293 2js5_A Uncharacterized protein 31.4 2.3E+02 0.0078 23.7 8.1 26 457-482 5-30 (71)
294 1u00_A HSC66, chaperone protei 31.1 2.2E+02 0.0074 27.0 9.2 82 411-504 116-202 (227)
295 3vbb_A Seryl-tRNA synthetase, 31.1 81 0.0028 34.4 6.9 28 511-538 119-146 (522)
296 1qsd_A Protein (beta-tubulin b 31.1 2.7E+02 0.0092 24.4 10.1 37 492-528 45-81 (106)
297 1oxz_A ADP-ribosylation factor 31.0 3.6E+02 0.012 25.7 13.2 79 422-503 35-127 (186)
298 1m1j_C Fibrinogen gamma chain; 30.9 5E+02 0.017 27.5 12.6 30 498-527 106-135 (409)
299 3lay_A Zinc resistance-associa 30.8 80 0.0028 29.8 6.0 17 355-371 4-20 (175)
300 3mtu_A Tropomyosin alpha-1 cha 30.8 2.1E+02 0.0071 23.5 7.8 28 457-484 4-31 (75)
301 1a93_B MAX protein, coiled coi 30.7 67 0.0023 23.6 4.2 22 463-484 8-29 (34)
302 3m0a_A TNF receptor-associated 30.4 1.9E+02 0.0066 22.5 9.6 49 457-505 7-55 (66)
303 3viq_B Mating-type switching p 30.2 2.2E+02 0.0074 24.5 8.0 20 457-476 10-29 (85)
304 3he4_A Synzip6; heterodimeric 30.2 26 0.0009 27.6 2.2 35 469-503 17-51 (56)
305 3he4_B Synzip5; heterodimeric 29.6 1.3E+02 0.0046 22.8 5.8 14 454-467 9-22 (46)
306 3mq1_A Mite allergen DER P 5; 29.4 1.4E+02 0.0047 26.6 6.8 57 457-519 6-63 (103)
307 2lw1_A ABC transporter ATP-bin 29.2 2.2E+02 0.0075 23.6 7.8 26 460-485 20-45 (89)
308 3fpp_A Macrolide-specific effl 28.8 1.7E+02 0.0058 28.2 8.2 14 513-526 137-150 (341)
309 2inr_A DNA topoisomerase 4 sub 28.4 6.2E+02 0.021 27.7 13.7 46 484-529 455-500 (514)
310 2xv5_A Lamin-A/C; structural p 28.3 2.4E+02 0.0081 23.3 7.7 21 450-470 7-27 (74)
311 1fmh_B General control protein 28.2 89 0.003 22.5 4.4 15 488-502 13-27 (33)
312 3e98_A GAF domain of unknown f 27.9 1.3E+02 0.0044 29.5 7.1 56 457-516 74-129 (252)
313 2wpq_A Trimeric autotransporte 27.7 3.2E+02 0.011 24.2 12.1 40 487-526 59-98 (99)
314 2p4w_A Transcriptional regulat 27.6 2.5E+02 0.0085 26.3 8.8 23 508-530 162-184 (202)
315 1gmj_A ATPase inhibitor; coile 27.5 2.6E+02 0.0089 24.0 8.0 38 444-481 38-77 (84)
316 2w83_C C-JUN-amino-terminal ki 27.5 2.9E+02 0.0098 23.5 10.7 25 473-497 34-58 (77)
317 3ljm_A Coil Ser L9C; de novo d 27.3 1E+02 0.0035 21.9 4.5 18 459-476 5-22 (31)
318 1gk4_A Vimentin; intermediate 27.3 2.6E+02 0.009 23.0 12.1 18 461-478 32-49 (84)
319 2gkw_A TNF receptor-associated 27.3 90 0.0031 28.7 5.7 17 458-474 3-19 (192)
320 2j69_A Bacterial dynamin-like 27.3 2.7E+02 0.0092 30.7 10.3 64 458-523 348-411 (695)
321 1r8e_A Multidrug-efflux transp 27.0 1.6E+02 0.0055 27.6 7.5 43 432-483 65-107 (278)
322 1deb_A APC protein, adenomatou 26.1 2.5E+02 0.0086 22.4 7.6 23 483-505 10-32 (54)
323 2f1m_A Acriflavine resistance 25.8 2.1E+02 0.0073 26.7 8.1 8 518-525 119-126 (277)
324 1fzc_C Fibrin; blood coagulati 25.8 33 0.0011 35.3 2.6 25 457-481 6-30 (319)
325 3vp9_A General transcriptional 25.8 2E+02 0.0069 25.0 7.1 33 457-489 38-70 (92)
326 2zdi_C Prefoldin subunit alpha 25.6 1E+02 0.0034 27.6 5.5 10 402-411 82-91 (151)
327 3tq2_A KE1; parallel three hel 25.6 1.7E+02 0.0058 21.4 5.5 30 473-502 5-34 (36)
328 3gpv_A Transcriptional regulat 25.5 2.6E+02 0.0089 24.9 8.2 76 411-487 55-134 (148)
329 1ez3_A Syntaxin-1A; three heli 25.4 3E+02 0.01 23.1 10.7 70 457-529 7-79 (127)
330 1cii_A Colicin IA; bacteriocin 24.8 7.4E+02 0.025 27.4 14.2 51 452-502 360-410 (602)
331 3he5_B Synzip2; heterodimeric 24.8 2.1E+02 0.0072 22.2 6.3 13 513-525 33-45 (52)
332 3w03_C DNA repair protein XRCC 24.8 1.4E+02 0.0047 28.7 6.5 11 179-189 11-21 (184)
333 3pik_A Cation efflux system pr 24.6 5E+02 0.017 25.3 14.7 87 441-527 330-424 (446)
334 3t97_C Nuclear pore glycoprote 24.6 62 0.0021 26.3 3.5 44 477-520 13-56 (64)
335 4dyl_A Tyrosine-protein kinase 24.5 5.8E+02 0.02 26.1 12.9 35 499-533 361-395 (406)
336 4e81_A Chaperone protein DNAK; 24.5 3.3E+02 0.011 25.9 9.2 11 411-421 119-129 (219)
337 1zvu_A Topoisomerase IV subuni 24.4 5.4E+02 0.018 29.4 12.1 45 485-529 404-448 (716)
338 2b5u_A Colicin E3; high resolu 24.4 5.9E+02 0.02 28.3 11.9 16 457-472 316-331 (551)
339 3ljm_A Coil Ser L9C; de novo d 24.3 1.1E+02 0.0039 21.7 4.3 23 481-503 6-28 (31)
340 4dnd_A Syntaxin-10, SYN10; str 24.1 2.7E+02 0.0093 25.0 8.0 22 506-527 107-128 (130)
341 3ibp_A Chromosome partition pr 24.0 1.6E+02 0.0056 30.4 7.2 53 474-530 8-60 (302)
342 2qyw_A Vesicle transport throu 23.9 2.2E+02 0.0075 24.3 7.0 27 451-477 45-71 (102)
343 3umh_A Amyloid beta A4 protein 23.7 5.3E+02 0.018 25.3 11.2 71 454-527 42-112 (211)
344 3m0d_C TNF receptor-associated 23.7 2.8E+02 0.0095 22.0 9.7 54 472-525 9-62 (65)
345 3ilw_A DNA gyrase subunit A; D 23.6 6.7E+02 0.023 27.2 12.2 45 485-529 418-462 (470)
346 3uun_A Dystrophin; triple heli 23.2 2.9E+02 0.0098 22.1 11.8 74 454-530 35-115 (119)
347 2b5u_A Colicin E3; high resolu 23.2 8E+02 0.027 27.2 15.2 22 506-527 404-425 (551)
348 3tq2_A KE1; parallel three hel 22.9 1.5E+02 0.005 21.7 4.8 32 493-524 4-35 (36)
349 3vmx_A Voltage-gated hydrogen 22.8 2.5E+02 0.0084 22.1 6.4 36 486-528 7-42 (48)
350 2zvf_A Alanyl-tRNA synthetase; 22.7 75 0.0026 28.3 4.1 47 455-501 7-57 (171)
351 3ghg_C Fibrinogen gamma chain; 22.6 2.4E+02 0.0082 30.1 8.4 30 500-529 108-137 (411)
352 4e17_B Catenin alpha-1; four h 22.3 32 0.0011 26.1 1.3 12 262-273 26-37 (40)
353 3vem_A Helicase protein MOM1; 22.2 3.8E+02 0.013 24.2 8.4 28 451-478 57-84 (115)
354 2z5i_A TM, general control pro 22.1 1.9E+02 0.0064 22.5 5.6 32 444-475 8-39 (52)
355 1hwt_C Protein (heme activator 22.0 47 0.0016 26.1 2.3 22 453-474 56-77 (81)
356 1gk7_A Vimentin; intermediate 22.0 1.1E+02 0.0039 22.6 4.2 13 487-499 24-36 (39)
357 3qh9_A Liprin-beta-2; coiled-c 22.0 3.8E+02 0.013 23.0 10.7 17 487-503 23-39 (81)
358 2k48_A Nucleoprotein; viral pr 21.9 3.8E+02 0.013 24.0 8.2 24 457-480 37-60 (107)
359 4ath_A MITF, microphthalmia-as 21.6 1.7E+02 0.006 25.0 5.8 31 455-485 49-79 (83)
360 3rrk_A V-type ATPase 116 kDa s 21.5 4.3E+02 0.015 26.0 9.6 30 455-484 226-255 (357)
361 1g6u_A Domain swapped dimer; d 21.5 2.6E+02 0.0088 21.5 6.1 6 516-521 39-44 (48)
362 2l5g_B Putative uncharacterize 21.5 1.7E+02 0.0059 22.4 5.1 26 459-484 6-31 (42)
363 1s94_A S-syntaxin; three helix 21.5 4E+02 0.014 24.0 8.7 71 456-529 37-110 (180)
364 3d5k_A OPRM, outer membrane pr 21.3 6.1E+02 0.021 25.2 14.7 28 503-531 423-450 (474)
365 2aze_A Transcription factor DP 21.2 3E+02 0.01 26.0 7.8 18 450-467 21-38 (155)
366 1uur_A Stata protein, STAT pro 20.9 8.3E+02 0.028 26.5 12.8 62 465-527 55-120 (473)
367 1s1c_X RHO-associated, coiled- 20.7 3.7E+02 0.013 22.4 8.0 17 474-490 4-20 (71)
368 3rrk_A V-type ATPase 116 kDa s 20.5 1.9E+02 0.0065 28.6 6.9 10 265-274 27-36 (357)
369 2l5g_A GPS2 protein, G protein 20.3 1E+02 0.0035 23.2 3.5 20 455-474 15-34 (38)
370 2w6b_A RHO guanine nucleotide 20.3 2E+02 0.0068 23.2 5.5 17 460-476 15-31 (56)
371 2kho_A Heat shock protein 70; 20.2 2.2E+02 0.0077 30.6 7.8 12 410-421 506-517 (605)
372 1hs7_A Syntaxin VAM3; UP-and-D 20.2 2.7E+02 0.0092 24.2 6.8 22 458-479 36-58 (97)
373 4b4t_M 26S protease regulatory 20.2 92 0.0032 32.9 4.7 18 461-478 38-55 (434)
374 2e7s_A RAB guanine nucleotide 20.0 4.8E+02 0.016 24.0 8.8 46 457-502 34-79 (135)
375 3thf_A Protein shroom; coiled- 20.0 6.1E+02 0.021 24.6 12.4 32 450-481 14-45 (190)
No 1
>1dh3_A Transcription factor CREB; protein-DNA complex, transcription/DNA complex; HET: DNA; 3.00A {Mus musculus} SCOP: h.1.3.1
Probab=99.44 E-value=1.2e-13 Score=108.93 Aligned_cols=52 Identities=33% Similarity=0.526 Sum_probs=48.9
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007579 434 KRAKRILANRQSAARSKERKMRYISELEHKVQTLQTEATTLSAQLTLLQRDS 485 (597)
Q Consensus 434 KR~KRILaNRESAaRSReRKKqYIeELE~KVq~LQtEN~tLsaQLtlLqre~ 485 (597)
||++|+++||+||++||+||++|+++||.+|..|+.||..|..++..|+..+
T Consensus 1 kr~rR~~~NResA~rSR~RKk~~~~~LE~~v~~L~~eN~~L~~~~~~L~~~~ 52 (55)
T 1dh3_A 1 KREVRLMKNREAARESRRKKKEYVKSLENRVAVLENQNKTLIEELKALKDLY 52 (55)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS
T ss_pred ChHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 6899999999999999999999999999999999999999999999887654
No 2
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=99.25 E-value=2.5e-11 Score=97.43 Aligned_cols=57 Identities=23% Similarity=0.358 Sum_probs=51.5
Q ss_pred hHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007579 433 PKRAKRILANRQSAARSKERKMRYISELEHKVQTLQTEATTLSAQLTLLQRDSVGLT 489 (597)
Q Consensus 433 pKR~KRILaNRESAaRSReRKKqYIeELE~KVq~LQtEN~tLsaQLtlLqre~~~L~ 489 (597)
+||.+|+.+||++|++||+||++|+.+||.+|..|+.+|..|..+|..|+.++..|.
T Consensus 1 Ekr~rrrerNR~AA~rcR~rKk~~~~~Le~~v~~L~~~n~~L~~ei~~L~~e~~~Lk 57 (63)
T 2wt7_A 1 EKRRIRRERNKMAAAKCRNRRRELTDTLQAETDQLEDEKSALQTEIANLLKEKEKLE 57 (63)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 489999999999999999999999999999999999999999999987776555443
No 3
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=99.22 E-value=4.2e-11 Score=95.24 Aligned_cols=56 Identities=30% Similarity=0.484 Sum_probs=50.6
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007579 434 KRAKRILANRQSAARSKERKMRYISELEHKVQTLQTEATTLSAQLTLLQRDSVGLT 489 (597)
Q Consensus 434 KR~KRILaNRESAaRSReRKKqYIeELE~KVq~LQtEN~tLsaQLtlLqre~~~L~ 489 (597)
||.+|+.+||++|++||+||++|+++||.+|..|+.+|..|..+|..|+.++..|.
T Consensus 1 kR~~r~erNr~AA~k~R~rKk~~~~~Le~~~~~L~~~n~~L~~~i~~L~~e~~~Lk 56 (61)
T 1t2k_D 1 KRRKFLERNRAAASRSRQKRKVWVQSLEKKAEDLSSLNGQLQSEVTLLRNEVAQLK 56 (61)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 68899999999999999999999999999999999999999999988776554443
No 4
>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A
Probab=99.06 E-value=3e-10 Score=90.74 Aligned_cols=55 Identities=31% Similarity=0.530 Sum_probs=48.6
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007579 434 KRAKRILANRQSAARSKERKMRYISELEHKVQTLQTEATTLSAQLTLLQRDSVGL 488 (597)
Q Consensus 434 KR~KRILaNRESAaRSReRKKqYIeELE~KVq~LQtEN~tLsaQLtlLqre~~~L 488 (597)
|+.+|..+||++|++||+||++|+.+||.+|..|+.+|..|..+|..|+.++..|
T Consensus 1 K~errr~rNr~AA~k~R~rKk~~~~~Le~~v~~L~~~n~~L~~~v~~L~~e~~~L 55 (62)
T 1jnm_A 1 KAERKRMRNRIAASKSRKRKLERIARLEEKVKTLKAQNSELASTANMLREQVAQL 55 (62)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred ChHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567888999999999999999999999999999999999999998877654443
No 5
>2dgc_A Protein (GCN4); basic domain, leucine zipper, DNA binding, eukaryotic regulatory protein, transcription/DNA complex; HET: DNA; 2.20A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1dgc_A* 1ld4_E 1ysa_C* 3p8m_D
Probab=98.94 E-value=1.2e-09 Score=88.24 Aligned_cols=53 Identities=32% Similarity=0.482 Sum_probs=43.2
Q ss_pred ChHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007579 432 DPKRAKRILANRQSAARSKERKMRYISELEHKVQTLQTEATTLSAQLTLLQRDS 485 (597)
Q Consensus 432 DpKR~KRILaNRESAaRSReRKKqYIeELE~KVq~LQtEN~tLsaQLtlLqre~ 485 (597)
|+...|| .+||+||+|||+||++|+.+||.+|..|+.+|..|..++..|...+
T Consensus 8 d~~~~KR-~rNreAArrsR~RK~~~~~~Le~~v~~L~~eN~~L~~ev~~Lr~~l 60 (63)
T 2dgc_A 8 DPAALKR-ARNTEAARRSRARKLQRMKQLEDKVEELLSKNYHLENEVARLKKLV 60 (63)
T ss_dssp ---CHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred cHHHHHH-HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4333333 4699999999999999999999999999999999999988876643
No 6
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=98.81 E-value=8.3e-09 Score=83.12 Aligned_cols=56 Identities=20% Similarity=0.286 Sum_probs=45.4
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007579 434 KRAKRILANRQSAARSKERKMRYISELEHKVQTLQTEATTLSAQLTLLQRDSVGLT 489 (597)
Q Consensus 434 KR~KRILaNRESAaRSReRKKqYIeELE~KVq~LQtEN~tLsaQLtlLqre~~~L~ 489 (597)
|+.+++.+||.+|+|+|+||++++++||.+++.|+.+|..|..+|..|+.++..|.
T Consensus 2 k~~rKr~rNr~AA~R~R~KKk~~~~~le~~~~~L~~~N~~L~~~i~~L~~E~~~Lk 57 (63)
T 1ci6_A 2 KKLKKMEQNKTAATRYRQKKRAEQEALTGECKELEKKNEALKERADSLAKEIQYLK 57 (63)
T ss_dssp ------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHhHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 67788899999999999999999999999999999999999999988877554443
No 7
>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1
Probab=98.80 E-value=9.2e-09 Score=85.13 Aligned_cols=65 Identities=23% Similarity=0.240 Sum_probs=54.7
Q ss_pred ChHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007579 432 DPKRAKRILANRQSAARSKERKMRYISELEHKVQTLQTEATTLSAQLTLLQRDSVGLTNQNNELK 496 (597)
Q Consensus 432 DpKR~KRILaNRESAaRSReRKKqYIeELE~KVq~LQtEN~tLsaQLtlLqre~~~L~aEN~ELK 496 (597)
++...||...||.+++..|+||.+||.+||.+|..|+.++..|..++..|..++..|..||.+||
T Consensus 6 ~~~~~kR~~qNR~AQRafReRK~~~i~~LE~~v~~le~~~~~l~~en~~Lr~~i~~L~~El~~lr 70 (70)
T 1gd2_E 6 QEPSSKRKAQNRAAQRAFRKRKEDHLKALETQVVTLKELHSSTTLENDQLRQKVRQLEEELRILK 70 (70)
T ss_dssp CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHC-
T ss_pred cchHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 44457888999999999999999999999999999999988887777777777777777776654
No 8
>1gu4_A CAAT/enhancer binding protein beta; transcription/DNA, protein-DNA complex, transcription factor, BZIP, C/EBP; 1.80A {Homo sapiens} SCOP: h.1.3.1 PDB: 1gtw_A 1gu5_A 1h88_A 1h8a_A 1io4_A 2e43_A* 2e42_A* 1h89_A 1ci6_B 1nwq_A
Probab=98.35 E-value=2.1e-06 Score=72.33 Aligned_cols=58 Identities=22% Similarity=0.233 Sum_probs=49.6
Q ss_pred cChHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007579 431 TDPKRAKRILANRQSAARSKERKMRYISELEHKVQTLQTEATTLSAQLTLLQRDSVGL 488 (597)
Q Consensus 431 ~DpKR~KRILaNRESAaRSReRKKqYIeELE~KVq~LQtEN~tLsaQLtlLqre~~~L 488 (597)
.|++-..|..+|.++|+|||+++++...+++.+|..|+.||..|..+|..|+.++..|
T Consensus 12 ~d~~Y~~rR~rNN~AakrSR~krk~r~~e~~~r~~~L~~eN~~L~~~v~~L~~E~~~L 69 (78)
T 1gu4_A 12 HSDEYKIRRERNNIAVRKSRDKAKMRNLETQHKVLELTAENERLQKKVEQLSRELSTL 69 (78)
T ss_dssp TCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566667778999999999999999999999999999999999999988766544433
No 9
>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA, protein-DNA complex; HET: DNA; 3.0A {Homo sapiens} SCOP: h.1.3.1
Probab=98.34 E-value=2.2e-06 Score=73.55 Aligned_cols=55 Identities=22% Similarity=0.234 Sum_probs=48.3
Q ss_pred cChHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007579 431 TDPKRAKRILANRQSAARSKERKMRYISELEHKVQTLQTEATTLSAQLTLLQRDS 485 (597)
Q Consensus 431 ~DpKR~KRILaNRESAaRSReRKKqYIeELE~KVq~LQtEN~tLsaQLtlLqre~ 485 (597)
.|++...|..+|.++|+|||+++++...+++.+|..|+.||..|..+|..|+.++
T Consensus 12 ~d~~Y~~rR~rNN~AarrSR~krk~r~~e~~~r~~~Le~EN~~Lr~~v~~L~~E~ 66 (87)
T 1hjb_A 12 HSDEYKIRRERNNIAVRKSRDKAKMRNLETQHKVLELTAENERLQKKVEQLSREL 66 (87)
T ss_dssp TSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4667777788999999999999999999999999999999999999987665533
No 10
>3a5t_A Transcription factor MAFG; protein-DNA complex, BZIP factor, acetylation, DNA-binding, isopeptide bond, nucleus; 2.80A {Mus musculus}
Probab=97.99 E-value=1.8e-07 Score=83.04 Aligned_cols=65 Identities=25% Similarity=0.353 Sum_probs=46.7
Q ss_pred ChHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007579 432 DPKRAKRILANRQSAARSKERKMRYISELEHKVQTLQTEATTLSAQLTLLQRDSVGLTNQNNELKFRLQAME 503 (597)
Q Consensus 432 DpKR~KRILaNRESAaRSReRKKqYIeELE~KVq~LQtEN~tLsaQLtlLqre~~~L~aEN~ELK~RLqaLE 503 (597)
.-|.+||.++||.+|+++|.||++.+++||.++..|+.+...|..+...| ..|-..||.++++|.
T Consensus 35 ~lK~~RR~lKNR~yAq~CR~rk~~~~~~LE~e~~~L~~e~e~L~~En~~l-------~~E~~~lk~k~e~L~ 99 (107)
T 3a5t_A 35 QLKQRRRTLKNRGYAASCRVKRVTQKEELEKQKAELQQEVEKLASENASM-------KLELDALRSKYEALQ 99 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTSSTTTTTTSTTSHH-------HHTTTSSSSCC----
T ss_pred HHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHH
Confidence 35899999999999999999999999999998887766666665554444 344444555554443
No 11
>2wt7_B Transcription factor MAFB; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 2wty_A* 1k1v_A
Probab=97.97 E-value=3.4e-05 Score=66.75 Aligned_cols=64 Identities=19% Similarity=0.313 Sum_probs=50.4
Q ss_pred ChHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007579 432 DPKRAKRILANRQSAARSKERKMRYISELEHKVQTLQTEATTLSAQLTLLQRDSVGLTNQNNELKFRLQAM 502 (597)
Q Consensus 432 DpKR~KRILaNRESAaRSReRKKqYIeELE~KVq~LQtEN~tLsaQLtlLqre~~~L~aEN~ELK~RLqaL 502 (597)
.-|..||-++||.+|+-+|.||...+.+||.++..|+.+...|..++..+. .|-..+|.++++|
T Consensus 25 ~lKq~RRtlKNRgyAq~CR~Kr~~q~~~LE~e~~~L~~e~~~L~~e~~~~~-------~e~d~~k~k~~~L 88 (90)
T 2wt7_B 25 RLKQKRRTLKNRGYAQSCRYKRVQQKHHLENEKTQLIQQVEQLKQEVSRLA-------RERDAYKVKSEKL 88 (90)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHTT
T ss_pred HHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHh
Confidence 458899999999999999999999999999988888777776666655544 4556666666544
No 12
>2oqq_A Transcription factor HY5; homodimer leucine zipper; 2.00A {Arabidopsis thaliana}
Probab=97.09 E-value=0.00085 Score=51.10 Aligned_cols=35 Identities=34% Similarity=0.561 Sum_probs=30.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007579 454 MRYISELEHKVQTLQTEATTLSAQLTLLQRDSVGL 488 (597)
Q Consensus 454 KqYIeELE~KVq~LQtEN~tLsaQLtlLqre~~~L 488 (597)
|+|+.+||.+++.|+..|++|..+|..|++++.+|
T Consensus 2 KaYl~eLE~r~k~le~~naeLEervstLq~EN~mL 36 (42)
T 2oqq_A 2 SAYLSELENRVKDLENKNSELEERLSTLQNENQML 36 (42)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence 68999999999999999999999998887754443
No 13
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=96.46 E-value=0.045 Score=46.74 Aligned_cols=51 Identities=20% Similarity=0.287 Sum_probs=42.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007579 455 RYISELEHKVQTLQTEATTLSAQLTLLQRDSVGLTNQNNELKFRLQAMEQQ 505 (597)
Q Consensus 455 qYIeELE~KVq~LQtEN~tLsaQLtlLqre~~~L~aEN~ELK~RLqaLEqQ 505 (597)
.-++.||.||+.+-..++-|..++..|+.++..|..+|.+++..-..|.++
T Consensus 6 ElleqLE~KIq~avdtI~lLqmEieELKekN~~L~~e~~e~~~~~~~L~~e 56 (81)
T 2jee_A 6 EVFEKLEAKVQQAIDTITLLQMEIEELKEKNNSLSQEVQNAQHQREELERE 56 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH
Confidence 357889999999999999999999999998888888888877766666544
No 14
>1skn_P DNA-binding domain of SKN-1; complex (transcription factor/DNA), transcription/DNA complex; HET: DNA LDA; 2.50A {Caenorhabditis elegans} SCOP: a.37.1.1
Probab=95.58 E-value=0.0033 Score=54.74 Aligned_cols=49 Identities=22% Similarity=0.368 Sum_probs=37.5
Q ss_pred HHHhhhcchHHHHhhhccChHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Q 007579 414 AELKKIMANEKLAEIALTDPKRAKRILANRQSAARSKERKMRYISELEH 462 (597)
Q Consensus 414 ~E~KKim~~ekLaElAl~DpKR~KRILaNRESAaRSReRKKqYIeELE~ 462 (597)
.|.+..+....|.+.-...-|.+||..+||.+|+++|.||...+++|+.
T Consensus 42 ~efn~lLk~~~Ls~~Ql~~ir~~RRR~KNr~AA~~CRkrK~~~~d~l~~ 90 (92)
T 1skn_P 42 SELQQVLKNESLSEYQRQLIRKIRRRGKNKVAARTCRQRRTDRHDKMSH 90 (92)
T ss_dssp HHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTC--
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhhc
Confidence 4555555555555555556799999999999999999999999998875
No 15
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=95.29 E-value=0.22 Score=52.16 Aligned_cols=78 Identities=12% Similarity=0.118 Sum_probs=37.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCCC
Q 007579 458 SELEHKVQTLQTEATTLSAQLTLLQRDSVGLTNQNNELKFRLQAMEQQAQLRDALNEALTAEVRRLKVATQEMASESD 535 (597)
Q Consensus 458 eELE~KVq~LQtEN~tLsaQLtlLqre~~~L~aEN~ELK~RLqaLEqQaqLrdALnEaLkeEVqrLK~a~gEi~~~~~ 535 (597)
..++.+.+.++.++..+..++...++++..+..|..+|+.+++...++.......++.+++|+..|...+.+=+++..
T Consensus 512 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~~~~~~~~~~~l~~e~~~~~~~~~~l~~~~~~~~~~~~ 589 (597)
T 3oja_B 512 THLKERQAFKLRETQARRTEADAKQKETEDLEQENIALEKQLDNKRAKQAELRQETSLKRQKVKQLEAKKNRNPDTRR 589 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC-------
T ss_pred HHHHhhhhhhHHHHHHHHHhhhhhhcchhhHHhhhHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHhcCCCcccc
Confidence 333344444444444444444444455555555555555555555545444444455666666666666666555543
No 16
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=95.22 E-value=0.31 Score=50.99 Aligned_cols=75 Identities=12% Similarity=0.136 Sum_probs=61.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccC
Q 007579 458 SELEHKVQTLQTEATTLSAQLTLLQRDSVGLTNQNNELKFRLQAMEQQAQLRDALNEALTAEVRRLKVATQEMAS 532 (597)
Q Consensus 458 eELE~KVq~LQtEN~tLsaQLtlLqre~~~L~aEN~ELK~RLqaLEqQaqLrdALnEaLkeEVqrLK~a~gEi~~ 532 (597)
+.|++.++.++.+.+.+..++..++++...+..+-..|+.++..|+.+..-.....+.+++|++.++..+.++-.
T Consensus 505 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~~~~~~~~~~~l~~e~~~~~~~~~~l~~ 579 (597)
T 3oja_B 505 DNLNKVFTHLKERQAFKLRETQARRTEADAKQKETEDLEQENIALEKQLDNKRAKQAELRQETSLKRQKVKQLEA 579 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhhhHHHHHHHHHhhhhhhcchhhHHhhhHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 777888888888888888888888888888888888888888899988888888888888998888777766543
No 17
>3s4r_A Vimentin; alpha-helix, cytoskeleton, intermediate filament, structural; 2.45A {Homo sapiens} PDB: 3ssu_A
Probab=94.57 E-value=0.38 Score=41.36 Aligned_cols=65 Identities=18% Similarity=0.271 Sum_probs=44.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007579 462 HKVQTLQTEATTLSAQLTLLQRDSV-----GLTNQNNELKFRLQAMEQQAQLRDALNEALTAEVRRLKVA 526 (597)
Q Consensus 462 ~KVq~LQtEN~tLsaQLtlLqre~~-----~L~aEN~ELK~RLqaLEqQaqLrdALnEaLkeEVqrLK~a 526 (597)
.||..|+.+|..|..++..++.... .-..+..+|+.+|..+.....-.....+.|.+++.+||..
T Consensus 23 dKVR~LEqqN~~Le~~i~~l~~~~~~~~~~~ye~~i~~Lr~~i~~~~~ek~~l~~e~dnl~~~~~~~k~K 92 (93)
T 3s4r_A 23 DKVRFLEQQNKILLAELEQLKGQGKSRLGDLYEEEMRELRRQVDQLTNDKARVEVERDNLAEDIMRLREK 92 (93)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4678888888888888877765432 2356777778888777666555555566677788877753
No 18
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=94.33 E-value=0.29 Score=44.78 Aligned_cols=58 Identities=14% Similarity=0.137 Sum_probs=47.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007579 451 ERKMRYISELEHKVQTLQTEATTLSAQLTLLQRDSVGLTNQNNELKFRLQAMEQQAQL 508 (597)
Q Consensus 451 eRKKqYIeELE~KVq~LQtEN~tLsaQLtlLqre~~~L~aEN~ELK~RLqaLEqQaqL 508 (597)
.+.++.+++|+.+++.+..|+..|+.++..++.++..+..++.+|+.++..|+.+..-
T Consensus 71 ~k~~~~~~~L~~~l~~~~kE~~~lK~el~~~~~k~e~~~~e~~~l~~~~~~l~~~~~~ 128 (138)
T 3hnw_A 71 FKAKKMADSLSLDIENKDKEIYDLKHELIAAQIKAESSAKEIKELKSEINKYQKNIVK 128 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444557889999999999999999999999988888888888888888888766443
No 19
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=94.06 E-value=0.51 Score=40.33 Aligned_cols=46 Identities=24% Similarity=0.329 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007579 457 ISELEHKVQTLQTEATTLSAQLTLLQRDSVGLTNQNNELKFRLQAM 502 (597)
Q Consensus 457 IeELE~KVq~LQtEN~tLsaQLtlLqre~~~L~aEN~ELK~RLqaL 502 (597)
|.-|.-+|..|+.+|..|..++..++.....|..||..|+......
T Consensus 22 I~lLqmEieELKekN~~L~~e~~e~~~~~~~L~~en~qLk~E~~~w 67 (81)
T 2jee_A 22 ITLLQMEIEELKEKNNSLSQEVQNAQHQREELERENNHLKEQQNGW 67 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHH
Confidence 3344445555555555555555555555555666666666555444
No 20
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=93.78 E-value=1.6 Score=42.44 Aligned_cols=11 Identities=0% Similarity=-0.064 Sum_probs=4.6
Q ss_pred HHHHHHHHHHH
Q 007579 516 LTAEVRRLKVA 526 (597)
Q Consensus 516 LkeEVqrLK~a 526 (597)
+.+|+..|...
T Consensus 155 ~~~e~~~l~~~ 165 (256)
T 3na7_A 155 IKETQQIIFKK 165 (256)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 33444444333
No 21
>2w6a_A ARF GTPase-activating protein GIT1; PIX, zinc, signaling protein, CAT-1, cytoplasm, ANK repeat, coiled-coil, zinc-finger, metal-binding; 1.40A {Rattus norvegicus}
Probab=93.00 E-value=0.34 Score=39.62 Aligned_cols=40 Identities=35% Similarity=0.380 Sum_probs=36.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007579 458 SELEHKVQTLQTEATTLSAQLTLLQRDSVGLTNQNNELKF 497 (597)
Q Consensus 458 eELE~KVq~LQtEN~tLsaQLtlLqre~~~L~aEN~ELK~ 497 (597)
.--|.||++|..-|..|+.++..+++....|.+||..|+.
T Consensus 23 aaSeAkiQQLmkVN~~ls~Elr~mQ~~lq~LQsen~~Lr~ 62 (63)
T 2w6a_A 23 ATSEAKVQQLMKVNSSLSDELRKLQREIHKLQAENLQLRQ 62 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HhhHHHHHHHHHHhHhhhHHHHHHHHHHHHHHhhhhhhcc
Confidence 3457899999999999999999999999999999998873
No 22
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A
Probab=92.47 E-value=4.8 Score=34.73 Aligned_cols=46 Identities=9% Similarity=0.133 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007579 455 RYISELEHKVQTLQTEATTLSAQLTLLQRDSVGLTNQNNELKFRLQ 500 (597)
Q Consensus 455 qYIeELE~KVq~LQtEN~tLsaQLtlLqre~~~L~aEN~ELK~RLq 500 (597)
...+.+|.+++.++.++..+-.+|..|++.+..|..+-..+..+|.
T Consensus 23 drae~~e~~~k~~e~~~~~~E~Ei~sL~kk~~~lE~eld~~ee~L~ 68 (101)
T 3u1c_A 23 DRAEQAEADKKAAEERSKQLEDDIVQLEKQLRVTEDSRDQVLEELH 68 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444444444444444444444444443
No 23
>3cve_A Homer protein homolog 1; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, postsynaptic cell membrane, synapse; 1.75A {Rattus norvegicus}
Probab=92.35 E-value=1.8 Score=36.22 Aligned_cols=50 Identities=12% Similarity=0.204 Sum_probs=41.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007579 458 SELEHKVQTLQTEATTLSAQLTLLQRDSVGLTNQNNELKFRLQAMEQQAQ 507 (597)
Q Consensus 458 eELE~KVq~LQtEN~tLsaQLtlLqre~~~L~aEN~ELK~RLqaLEqQaq 507 (597)
.++..|++.++.+|..|..+|..|+.+...-..+...++..|..+-+.+.
T Consensus 3 ~~~~~kLq~~E~~N~~Le~~v~~le~~Le~s~~~q~~~~~Elk~~~e~Ld 52 (72)
T 3cve_A 3 HNSHMKLQEVEIRNKDLEGQLSEMEQRLEKSQSEQDAFRSNLKTLLEILD 52 (72)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 46788999999999999999999999988888888888888777655543
No 24
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=92.35 E-value=2.4 Score=49.54 Aligned_cols=12 Identities=33% Similarity=0.528 Sum_probs=8.1
Q ss_pred hHHHHHHhcccc
Q 007579 264 VDDLFSAYMNLE 275 (597)
Q Consensus 264 ~ddlf~~Ymnl~ 275 (597)
.+||+.-|--|-
T Consensus 704 ~~eF~~RY~~L~ 715 (1080)
T 2dfs_A 704 YQEFFSRYRVLM 715 (1080)
T ss_dssp HHHHHHHHTTTS
T ss_pred HHHHHHHHHHHC
Confidence 467888886653
No 25
>3cvf_A Homer-3, homer protein homolog 3; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, phosphoprotein, polymorphism; 2.90A {Homo sapiens}
Probab=92.20 E-value=0.91 Score=38.55 Aligned_cols=53 Identities=21% Similarity=0.240 Sum_probs=40.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007579 457 ISELEHKVQTLQTEATTLSAQLTLLQRDSVGLTNQNNELKFRLQAMEQQAQLR 509 (597)
Q Consensus 457 IeELE~KVq~LQtEN~tLsaQLtlLqre~~~L~aEN~ELK~RLqaLEqQaqLr 509 (597)
.+++..|++.++.+|..|..+|..|+.+...-..+-..++..|..+-+++..+
T Consensus 8 ~e~~~~klq~~E~rN~~Le~~v~~le~~Le~s~~~q~~~~~Elk~l~e~Ld~K 60 (79)
T 3cvf_A 8 REETQQKVQDLETRNAELEHQLRAMERSLEEARAERERARAEVGRAAQLLDVS 60 (79)
T ss_dssp --CTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH
Confidence 35677888889999999999999998888888888888888777765554433
No 26
>3ol1_A Vimentin; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, structural protein; 2.81A {Homo sapiens} PDB: 3uf1_A
Probab=92.11 E-value=2.3 Score=37.66 Aligned_cols=37 Identities=8% Similarity=0.186 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007579 474 LSAQLTLLQRDSVGLTNQNNELKFRLQAMEQQAQLRD 510 (597)
Q Consensus 474 LsaQLtlLqre~~~L~aEN~ELK~RLqaLEqQaqLrd 510 (597)
+...+..|.+.......-..+|..+++.|..++.+..
T Consensus 67 ~E~di~~lrK~lD~~~l~r~dLE~~iesL~eEl~FLK 103 (119)
T 3ol1_A 67 AENTLQSFRQDVDNASLARLDLERKVESLQEEIAFLK 103 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhhcccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444445555555555555555555544433
No 27
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=92.09 E-value=0.91 Score=58.41 Aligned_cols=63 Identities=16% Similarity=0.213 Sum_probs=45.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007579 461 EHKVQTLQTEATTLSAQLTLLQRDSVGLTNQNNELKFRLQAMEQQAQLRDALNEALTAEVRRL 523 (597)
Q Consensus 461 E~KVq~LQtEN~tLsaQLtlLqre~~~L~aEN~ELK~RLqaLEqQaqLrdALnEaLkeEVqrL 523 (597)
+.+++.++.+.+.|.++|+.|+.++..+..|...|+.+++..+.++.....|...|..|-.|-
T Consensus 2027 ~~~L~~~~~~L~~le~~l~~L~~~~~~~~~ek~~L~~e~~~~~~kl~rA~~Li~gL~~Ek~RW 2089 (3245)
T 3vkg_A 2027 KLKQDEIVATITALEKSIATYKEEYATLIRETEQIKTESSKVKNKVDRSIALLDNLNSERGRW 2089 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccH
Confidence 334445556666777777778888888888888888888888877777777766666555443
No 28
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=91.90 E-value=1.9 Score=41.69 Aligned_cols=28 Identities=18% Similarity=0.270 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007579 478 LTLLQRDSVGLTNQNNELKFRLQAMEQQ 505 (597)
Q Consensus 478 LtlLqre~~~L~aEN~ELK~RLqaLEqQ 505 (597)
++.|+.+++.|...+..|+.+|-.||+.
T Consensus 90 ~~~Lq~el~~l~~~~~~l~~~ireLEq~ 117 (189)
T 2v71_A 90 VSVLEDDLSQTRAIKEQLHKYVRELEQA 117 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444444444444444444433
No 29
>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus}
Probab=91.86 E-value=5.6 Score=34.10 Aligned_cols=78 Identities=14% Similarity=0.159 Sum_probs=41.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 007579 450 KERKMRYISELEHKVQTLQTEATTLSAQLTLLQRDSVGLTNQNNELKFRLQAMEQQAQLRDALNEALTAEVRRLKVAT 527 (597)
Q Consensus 450 ReRKKqYIeELE~KVq~LQtEN~tLsaQLtlLqre~~~L~aEN~ELK~RLqaLEqQaqLrdALnEaLkeEVqrLK~a~ 527 (597)
++.-....+.||.+++.++.++..+..+|..|++.+..|..+-..+..+|......+...+........||..|..-+
T Consensus 18 ~e~a~d~ae~~e~~~k~~e~~~~~~E~ei~sL~kKiq~lE~eld~~~e~l~~a~~kLe~~ek~~~~AE~evasLnRri 95 (101)
T 3u59_A 18 KENAIDRAEQAEADKKQAEDRCKQLEEEQQGLQKKLKGTEDEVEKYSESVKEAQEKLEQAEKKATDAEAEVASLNRRI 95 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444556666666666666666666666666666666665555555555544443333333333334555554433
No 30
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=91.85 E-value=3.8 Score=42.00 Aligned_cols=65 Identities=18% Similarity=0.275 Sum_probs=40.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007579 457 ISELEHKVQTLQTEATTLSAQLTLLQRDSVGLTNQNNELKFRLQAMEQQAQLRDALNEALTAEVRRLK 524 (597)
Q Consensus 457 IeELE~KVq~LQtEN~tLsaQLtlLqre~~~L~aEN~ELK~RLqaLEqQaqLrdALnEaLkeEVqrLK 524 (597)
|.+++.....++++.++--..|..|+.. |..+..+-..|+++||.+..-+++..+.+.+||++||
T Consensus 406 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 470 (471)
T 3mq9_A 406 LTEAQKGFQDVEAQAATANHTVMALMAS---LDAEKAQGQKKVEELEGEITTLNHKLQDASAEVERLR 470 (471)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhhHHHHHHHhhhcchhHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3444444444444444444444444443 3334334446889999998888888889999999987
No 31
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=91.72 E-value=1.6 Score=50.90 Aligned_cols=31 Identities=6% Similarity=0.156 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007579 470 EATTLSAQLTLLQRDSVGLTNQNNELKFRLQ 500 (597)
Q Consensus 470 EN~tLsaQLtlLqre~~~L~aEN~ELK~RLq 500 (597)
+...|..+++.|+.++..+..|..+|+.+++
T Consensus 985 ~v~~L~~e~~~l~~~~~~~~ke~~~lee~~~ 1015 (1080)
T 2dfs_A 985 RVLSLQEEIAKLRKELHQTQTEKKTIEEWAD 1015 (1080)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333444444444444444444444333
No 32
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=91.11 E-value=1.4 Score=51.33 Aligned_cols=23 Identities=22% Similarity=0.310 Sum_probs=14.6
Q ss_pred CCCCCCCCCCChhhhHhhhcccC
Q 007579 2 GGDSNEGNGGNTDMMQRIQSSFG 24 (597)
Q Consensus 2 ~~~~~~~~~~~~~~~~r~~~~~~ 24 (597)
-|.|.-|-|+++-.+-+.....+
T Consensus 175 sGeSGaGKTe~~k~~~~yla~~~ 197 (1184)
T 1i84_S 175 TGESGAGKTENTKKVIQYLAVVA 197 (1184)
T ss_dssp CCSTTSSTTHHHHHHHHHHHHHS
T ss_pred ecCCCCCccHHHHHHHHHHHHHh
Confidence 47777788877776655444333
No 33
>1wle_A Seryl-tRNA synthetase; ligase; HET: SRP; 1.65A {Bos taurus}
Probab=91.07 E-value=2.8 Score=45.18 Aligned_cols=81 Identities=14% Similarity=0.121 Sum_probs=45.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007579 457 ISELEHKVQTLQTEATTLSAQLTLLQRDSVGLTN-----------QNNELKFRLQAMEQQAQLRDALNEALTAEVRRLKV 525 (597)
Q Consensus 457 IeELE~KVq~LQtEN~tLsaQLtlLqre~~~L~a-----------EN~ELK~RLqaLEqQaqLrdALnEaLkeEVqrLK~ 525 (597)
+.+|..+...|+.+...|+++...+.++...++. +-.+|+.++..|..+..-.+.....+.+++..+-.
T Consensus 72 ~~~ld~~~r~~~~~~~~l~~~rn~~sk~i~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~i~~l~~~~~~~~~~l~~~l~ 151 (501)
T 1wle_A 72 IISTWQELRQLREQIRSLEEEKEAVTEAVRALVVNQDNSQVQQDPQYQSLRARGREIRKQLTLLYPKEAQLEEQFYLRAL 151 (501)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCTTGGGCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444444444333321 22355555555555555555556677788888888
Q ss_pred HhccccCCCCCC
Q 007579 526 ATQEMASESDPS 537 (597)
Q Consensus 526 a~gEi~~~~~~~ 537 (597)
.++.++.+..+.
T Consensus 152 ~iPN~~~~~vP~ 163 (501)
T 1wle_A 152 RLPNQTHPDVPV 163 (501)
T ss_dssp TSCCCCCTTCCC
T ss_pred hCCCCCCCCCCC
Confidence 888888776543
No 34
>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}
Probab=90.70 E-value=0.87 Score=42.84 Aligned_cols=50 Identities=12% Similarity=0.187 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007579 456 YISELEHKVQTLQTEATTLSAQLTLLQRDSVGLTNQNNELKFRLQAMEQQ 505 (597)
Q Consensus 456 YIeELE~KVq~LQtEN~tLsaQLtlLqre~~~L~aEN~ELK~RLqaLEqQ 505 (597)
-|..|+.++..|+.++..|...+..-.+.+..|..|...|..++..+|+.
T Consensus 69 ~I~~L~~El~~l~~ki~dLeeel~eK~K~~e~l~DEl~aLqlq~n~lE~k 118 (152)
T 3a7p_A 69 TLAILQKELKSKEQEIRRLKEVIALKNKNTERLNAALISGTIENNVLQQK 118 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555555555555555443333333333444444444444434333
No 35
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=90.46 E-value=3.4 Score=39.93 Aligned_cols=75 Identities=24% Similarity=0.327 Sum_probs=43.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHH-------HHHHHHHHHHHHHH
Q 007579 457 ISELEHKVQTLQTEATTLSAQLTLLQRDSVGLTNQNNELKFRLQAMEQQ---AQLRDAL-------NEALTAEVRRLKVA 526 (597)
Q Consensus 457 IeELE~KVq~LQtEN~tLsaQLtlLqre~~~L~aEN~ELK~RLqaLEqQ---aqLrdAL-------nEaLkeEVqrLK~a 526 (597)
+..|+.++..|..++..|..+|-.|+..+..|....+.+..-|+.++.. +.=+.|+ -+.|..+|+|||.-
T Consensus 90 ~~~Lq~el~~l~~~~~~l~~~ireLEq~NDdlEr~~R~~~~SleD~e~kln~aiEr~alLE~El~EKe~l~~~~QRLkdE 169 (189)
T 2v71_A 90 VSVLEDDLSQTRAIKEQLHKYVRELEQANDDLERAKRATIMSLEDFEQRLNQAIERNAFLESELDEKESLLVSVQRLKDE 169 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6777888888888888888888888888888888887777766666544 2222222 33455556666665
Q ss_pred hcccc
Q 007579 527 TQEMA 531 (597)
Q Consensus 527 ~gEi~ 531 (597)
+-++-
T Consensus 170 ~rDLk 174 (189)
T 2v71_A 170 ARDLR 174 (189)
T ss_dssp -----
T ss_pred HHHHH
Confidence 55443
No 36
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}
Probab=90.25 E-value=6.4 Score=37.50 Aligned_cols=80 Identities=18% Similarity=0.204 Sum_probs=36.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHH
Q 007579 449 SKERKMRYISELEHKVQTLQTEATTLSAQLTLLQRDSVGLTNQNNELKFRLQ-------AMEQQAQLRDALNEALTAEVR 521 (597)
Q Consensus 449 SReRKKqYIeELE~KVq~LQtEN~tLsaQLtlLqre~~~L~aEN~ELK~RLq-------aLEqQaqLrdALnEaLkeEVq 521 (597)
-|.||.. .||-..++.++..+..|..++..|+.....|..+...|...|. ...+-..-...-+..|..|+.
T Consensus 30 ~rlkK~~--tEl~k~~~~~E~~~rELq~~~~~L~~~k~~Leke~~~LQa~L~qEr~~r~q~se~~~elq~ri~~L~~El~ 107 (168)
T 3o0z_A 30 VRLRKSH--TEMSKSISQLESLNRELQERNRILENSKSQTDKDYYQLQAILEAERRDRGHDSEMIGDLQARITSLQEEVK 107 (168)
T ss_dssp HHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444443 4444444444444444444444444444444444444433332 111111222234666777777
Q ss_pred HHHHHhccc
Q 007579 522 RLKVATQEM 530 (597)
Q Consensus 522 rLK~a~gEi 530 (597)
+++.....+
T Consensus 108 ~~k~~~~k~ 116 (168)
T 3o0z_A 108 HLKHNLEKV 116 (168)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 777765543
No 37
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=90.05 E-value=2.3 Score=37.53 Aligned_cols=70 Identities=21% Similarity=0.232 Sum_probs=40.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHH
Q 007579 456 YISELEHKVQTLQTEATTLSAQLTLLQRDSVGLTNQNNELKF--------------RLQAMEQQAQLRDALNEALTAEVR 521 (597)
Q Consensus 456 YIeELE~KVq~LQtEN~tLsaQLtlLqre~~~L~aEN~ELK~--------------RLqaLEqQaqLrdALnEaLkeEVq 521 (597)
-+..|..+|..|+.|+..|..++..|+-+. +++.|+- -..++..+ -.....+.|++||+
T Consensus 13 ~~~~lr~ei~~Le~E~~rLr~~~~~LE~~L-----e~~~l~Gd~~~~~TKVlH~~~NPa~~a~~--~~~~~~e~Lq~E~e 85 (100)
T 1go4_E 13 EADTLRLKVEELEGERSRLEEEKRMLEAQL-----ERRALQGDYDQSRTKVLHMSLNPTSVARQ--RLREDHSQLQAECE 85 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHSSCCSCCCTTTEEEEEESSCHHHHHHH--HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHhhccccCCccCeeeeecCChHHHHHH--HHHHHHHHHHHHHH
Confidence 456666777777777777777666665433 2211211 01111111 12356788999999
Q ss_pred HHHHHhccccC
Q 007579 522 RLKVATQEMAS 532 (597)
Q Consensus 522 rLK~a~gEi~~ 532 (597)
+||..+.-+-.
T Consensus 86 rLr~~v~~lEe 96 (100)
T 1go4_E 86 RLRGLLRAMER 96 (100)
T ss_dssp HHHHHHTTCC-
T ss_pred HHHHHHHHHhc
Confidence 99998876654
No 38
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A
Probab=89.96 E-value=8.8 Score=33.09 Aligned_cols=73 Identities=14% Similarity=0.138 Sum_probs=50.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007579 451 ERKMRYISELEHKVQTLQTEATTLSAQLTLLQRDSVGLTNQNNELKFRLQAMEQQAQLRDALNEALTAEVRRL 523 (597)
Q Consensus 451 eRKKqYIeELE~KVq~LQtEN~tLsaQLtlLqre~~~L~aEN~ELK~RLqaLEqQaqLrdALnEaLkeEVqrL 523 (597)
..-..-+.++|.+...++.|+..|..++..|+.++..+...-.+.+.+|..-+..+.-.++.+.+|..-|+-|
T Consensus 26 e~~e~~~k~~e~~~~~~E~Ei~sL~kk~~~lE~eld~~ee~L~ea~~kLee~ek~~~~aE~ev~~L~Rriqll 98 (101)
T 3u1c_A 26 EQAEADKKAAEERSKQLEDDIVQLEKQLRVTEDSRDQVLEELHKSEDSLLFAEENAAKAESEVASLNRRIQLV 98 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334445667777777777888888888888887777777777777777777666666666666666666544
No 39
>3qh9_A Liprin-beta-2; coiled-coil, dimerization, structural protein; 2.01A {Homo sapiens}
Probab=89.78 E-value=3 Score=35.74 Aligned_cols=63 Identities=21% Similarity=0.253 Sum_probs=48.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007579 458 SELEHKVQTLQTEATTLSAQLTLLQRDSVGLTNQNNELKFRLQAMEQQAQLRDALNEALTAEV 520 (597)
Q Consensus 458 eELE~KVq~LQtEN~tLsaQLtlLqre~~~L~aEN~ELK~RLqaLEqQaqLrdALnEaLkeEV 520 (597)
++.-.+.+.|-.|.+.|+-+|+.++.+...-....+.-|..|+.|.+++-.+++-.+.|..++
T Consensus 15 ee~~~~~E~L~qEi~~Lr~kv~elEnErlQyEkKLKsTK~El~~Lq~qLe~kd~ei~rL~~~l 77 (81)
T 3qh9_A 15 EEKQRKAEELLQELRHLKIKVEELENERNQYEWKLKATKAEVAQLQEQVALKDAEIERLHSQL 77 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 444455567777788888888888887777777777777888888888888888877777665
No 40
>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}
Probab=89.70 E-value=3.1 Score=39.15 Aligned_cols=39 Identities=15% Similarity=0.204 Sum_probs=29.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007579 462 HKVQTLQTEATTLSAQLTLLQRDSVGLTNQNNELKFRLQ 500 (597)
Q Consensus 462 ~KVq~LQtEN~tLsaQLtlLqre~~~L~aEN~ELK~RLq 500 (597)
.-++.|+.|...|..++..++.....|..||.+|-.|..
T Consensus 96 K~~e~l~DEl~aLqlq~n~lE~kl~kLq~EN~~LV~RWM 134 (152)
T 3a7p_A 96 KNTERLNAALISGTIENNVLQQKLSDLKKEHSQLVARWL 134 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445677778888888888888888888888888877753
No 41
>3efg_A Protein SLYX homolog; xanthomonas campestris PV. campestris, coiled-coil, structur genomics, PSI-2, protein structure initiative; 2.00A {Xanthomonas campestris PV}
Probab=89.70 E-value=0.73 Score=38.61 Aligned_cols=50 Identities=18% Similarity=0.106 Sum_probs=38.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007579 455 RYISELEHKVQTLQTEATTLSAQLTLLQRDSVGLTNQNNELKFRLQAMEQ 504 (597)
Q Consensus 455 qYIeELE~KVq~LQtEN~tLsaQLtlLqre~~~L~aEN~ELK~RLqaLEq 504 (597)
..|.+||.|+..++.-...|...|..-+++...|..+.+.|..|+..++.
T Consensus 14 ~Ri~~LE~klAfqE~tIeeLn~~v~~Qq~~Id~L~~ql~~L~~rl~~~~~ 63 (78)
T 3efg_A 14 ARLVELETRLSFQEQALTELSEALADARLTGARNAELIRHLLEDLGKVRS 63 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC-----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 35788999999999999999998888888888888888888887776643
No 42
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=89.50 E-value=2.6 Score=38.46 Aligned_cols=48 Identities=13% Similarity=0.165 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007579 456 YISELEHKVQTLQTEATTLSAQLTLLQRDSVGLTNQNNELKFRLQAME 503 (597)
Q Consensus 456 YIeELE~KVq~LQtEN~tLsaQLtlLqre~~~L~aEN~ELK~RLqaLE 503 (597)
.+++++.++..|..+...+..++..+.++...|..++++|..++..|+
T Consensus 83 ~l~~~~kE~~~lK~el~~~~~k~e~~~~e~~~l~~~~~~l~~~~~~le 130 (138)
T 3hnw_A 83 DIENKDKEIYDLKHELIAAQIKAESSAKEIKELKSEINKYQKNIVKLE 130 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444444444444444555555555544443
No 43
>3s9g_A Protein hexim1; cyclin T-binding domain (TBD), cyclin T1/P-TEFB/7SK snRNA, N transcription; 2.10A {Homo sapiens} PDB: 2gd7_A
Probab=89.41 E-value=1.4 Score=39.08 Aligned_cols=40 Identities=23% Similarity=0.253 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHH
Q 007579 458 SELEHKVQTLQTEATTLSA-------QLTLLQRDSVGLTNQNNELKF 497 (597)
Q Consensus 458 eELE~KVq~LQtEN~tLsa-------QLtlLqre~~~L~aEN~ELK~ 497 (597)
.+||.++..|+.||..|.. +|..|+.+...|.+||..|+.
T Consensus 40 l~LE~~~s~le~e~~rlr~~~~~~~~~v~eLe~everL~~ENq~L~~ 86 (104)
T 3s9g_A 40 LELEKSLSRMEDENNRLRLESKRLDARVRELELELDRLRAENLQLLT 86 (104)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHH
Confidence 4577777777777766665 444444444444444444443
No 44
>3qne_A Seryl-tRNA synthetase, cytoplasmic; amino acid biosynthesis, CTG-clade, codon ambiguity, pathoge II aminoacyl-tRNA synthetase family; 2.00A {Candida albicans} PDB: 3qo7_A* 3qo8_A* 3qo5_A
Probab=88.92 E-value=2.9 Score=45.17 Aligned_cols=71 Identities=7% Similarity=0.070 Sum_probs=40.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCCCCC
Q 007579 461 EHKVQTLQTEATTLSAQLTLLQRD---SVGLTNQNNELKFRLQAMEQQAQLRDALNEALTAEVRRLKVATQEMASESDPS 537 (597)
Q Consensus 461 E~KVq~LQtEN~tLsaQLtlLqre---~~~L~aEN~ELK~RLqaLEqQaqLrdALnEaLkeEVqrLK~a~gEi~~~~~~~ 537 (597)
..+++.|+.+-+.++++|..+.+. ...|..+-++|+.+|..|+ .....+.+++..+-..++.++.+..+.
T Consensus 46 ~~~~~~l~~~rn~~sk~i~~~k~~~~~~~~l~~~~~~l~~~i~~le-------~~~~~~~~~~~~~l~~iPN~~~~~vP~ 118 (485)
T 3qne_A 46 RFDLDEHNKKLNSVQKEIGKRFKAKEDAKDLIAEKEKLSNEKKEII-------EKEAEADKNLRSKINQVGNIVHESVVD 118 (485)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHTTSCCCCCTTSCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHhCCCCCCccCCC
Confidence 334444555555555555444321 2345555555555555554 445566678888888888888776554
Q ss_pred c
Q 007579 538 K 538 (597)
Q Consensus 538 ~ 538 (597)
+
T Consensus 119 g 119 (485)
T 3qne_A 119 S 119 (485)
T ss_dssp C
T ss_pred C
Confidence 3
No 45
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=88.88 E-value=1.4 Score=48.45 Aligned_cols=19 Identities=21% Similarity=0.275 Sum_probs=9.7
Q ss_pred HHHHHHHHHHHHHHHHHhc
Q 007579 510 DALNEALTAEVRRLKVATQ 528 (597)
Q Consensus 510 dALnEaLkeEVqrLK~a~g 528 (597)
...++.+..||+||.+++.
T Consensus 137 QsnLedq~~kIQRLEvDId 155 (562)
T 3ghg_A 137 QKNVRAQLVDMKRLEVDID 155 (562)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3334444456666666553
No 46
>2dq0_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: SSA; 2.60A {Pyrococcus horikoshii} PDB: 2dq1_A* 2dq2_A 2zr2_A* 2zr3_A
Probab=88.28 E-value=5.7 Score=42.16 Aligned_cols=103 Identities=15% Similarity=0.107 Sum_probs=52.3
Q ss_pred ChHHHHHHHHhhHH-H-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHH
Q 007579 432 DPKRAKRILANRQS-A-ARSKERKMRYISELEHKVQTLQTEATTLSAQLTLLQRDSVGLTN---QNNELKFRLQAMEQQA 506 (597)
Q Consensus 432 DpKR~KRILaNRES-A-aRSReRKKqYIeELE~KVq~LQtEN~tLsaQLtlLqre~~~L~a---EN~ELK~RLqaLEqQa 506 (597)
+|..+++-|++|-. . .. -...+.+|..+...|+.+...|+++...+.++...+.. +-.+|+.++..|..+.
T Consensus 10 n~~~~~~~~~~R~~~~~~~----~~~~~~~l~~~~r~~~~~~~~l~~~~n~~sk~i~~~~~~~~~~~~l~~~~~~~~~~~ 85 (455)
T 2dq0_A 10 NPELVKNDLIKRGELEKVK----WVDEILKLDTEWRTKLKEINRLRHERNKIAVEIGKRRKKGEPVDELLAKSREIVKRI 85 (455)
T ss_dssp CHHHHHHHHHHHTCGGGTH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCCTHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHhCCCchhh----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHH
Confidence 45555555555532 1 00 01333344444444444444444444444444332221 1234444444444444
Q ss_pred HHHHHHHHHHHHHHHHHHHHhccccCCCCCCc
Q 007579 507 QLRDALNEALTAEVRRLKVATQEMASESDPSK 538 (597)
Q Consensus 507 qLrdALnEaLkeEVqrLK~a~gEi~~~~~~~~ 538 (597)
.-.+.....+.+++..+-..++.++.+..+.+
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~ipN~~~~~vP~g 117 (455)
T 2dq0_A 86 GELENEVEELKKKIDYYLWRLPNITHPSVPVG 117 (455)
T ss_dssp HHHHHHHHHHHHHHHHHHTTSCCCCCTTSCCC
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCCCCccCCCC
Confidence 44455556777888888888998888766544
No 47
>2ocy_A RAB guanine nucleotide exchange factor SEC2; RAB, GEF, guanine exchange factor, coiled-coil, endocytosis/exocytosis complex; 3.30A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=87.54 E-value=17 Score=34.08 Aligned_cols=71 Identities=18% Similarity=0.324 Sum_probs=46.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccC
Q 007579 460 LEHKVQTLQTEATTLSAQLTLLQRDSVGLTN---QNNELKFRLQAMEQQAQLRDALNEALTAEVRRLKVATQEMAS 532 (597)
Q Consensus 460 LE~KVq~LQtEN~tLsaQLtlLqre~~~L~a---EN~ELK~RLqaLEqQaqLrdALnEaLkeEVqrLK~a~gEi~~ 532 (597)
.|..+..++.|...|.+.| ....+.+... +...++.+...|+.+..=.+.+.+.|..++..||..+-.+.+
T Consensus 77 aE~~~~~ie~ElEeLTasL--FeEAN~MVa~ar~~~~~~e~r~~~L~~ql~e~~~~l~~lq~ql~~LK~v~~~m~~ 150 (154)
T 2ocy_A 77 AEEEADKLNKEVEDLTASL--FDEANNMVADARKEKYAIEILNKRLTEQLREKDTLLDTLTLQLKNLKKVMHSLDN 150 (154)
T ss_dssp HHTHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCC-
T ss_pred HHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 3555556666666666542 3333333333 333456677777777777888999999999999998876654
No 48
>2oqq_A Transcription factor HY5; homodimer leucine zipper; 2.00A {Arabidopsis thaliana}
Probab=87.51 E-value=1.6 Score=33.38 Aligned_cols=36 Identities=22% Similarity=0.294 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007579 464 VQTLQTEATTLSAQLTLLQRDSVGLTNQNNELKFRL 499 (597)
Q Consensus 464 Vq~LQtEN~tLsaQLtlLqre~~~L~aEN~ELK~RL 499 (597)
|..|+.....|..++++|+.....|..||..|++-|
T Consensus 5 l~eLE~r~k~le~~naeLEervstLq~EN~mLRqvl 40 (42)
T 2oqq_A 5 LSELENRVKDLENKNSELEERLSTLQNENQMLRHIL 40 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHh
Confidence 344555555555555555555555555555555433
No 49
>1ses_A Seryl-tRNA synthetase; ligase; HET: AHX AMP; 2.50A {Thermus thermophilus} SCOP: a.2.7.1 d.104.1.1 PDB: 1ser_A* 1set_A* 1sry_A
Probab=87.44 E-value=5.8 Score=41.57 Aligned_cols=102 Identities=14% Similarity=0.177 Sum_probs=54.8
Q ss_pred ChHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHH
Q 007579 432 DPKRAKRILANRQSAARSKERKMRYISELEHKVQTLQTEATTLSAQLTLLQRDSVG-LTNQNNELKFRLQAMEQQAQLRD 510 (597)
Q Consensus 432 DpKR~KRILaNRESAaRSReRKKqYIeELE~KVq~LQtEN~tLsaQLtlLqre~~~-L~aEN~ELK~RLqaLEqQaqLrd 510 (597)
++..+++.|++|-... . ...+.+|..+...++.+...|+++...+.++... -..+-.+|+.++..|..+..-.+
T Consensus 10 ~~~~~~~~~~~r~~~~---~--~~~~~~~~~~~r~~~~~~~~l~~~~n~~sk~i~~~~~~~~~~l~~~~~~~~~~~~~~~ 84 (421)
T 1ses_A 10 EPEVFHRAIREKGVAL---D--LEALLALDREVQELKKRLQEVQTERNQVAKRVPKAPPEEKEALIARGKALGEEAKRLE 84 (421)
T ss_dssp CHHHHHHHHHHHTCCC---C--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSSCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHhCCCc---C--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHH
Confidence 4555555555553210 0 3445555555555555555555555555544321 00122344444444444444445
Q ss_pred HHHHHHHHHHHHHHHHhccccCCCCCCc
Q 007579 511 ALNEALTAEVRRLKVATQEMASESDPSK 538 (597)
Q Consensus 511 ALnEaLkeEVqrLK~a~gEi~~~~~~~~ 538 (597)
.....+.+++..+-..++.++.+..+.+
T Consensus 85 ~~~~~~~~~~~~~~~~ipN~~~~~vp~g 112 (421)
T 1ses_A 85 EALREKEARLEALLLQVPLPPWPGAPVG 112 (421)
T ss_dssp HHHHHHHHHHHHHHTTCCCCCCTTSCSS
T ss_pred HHHHHHHHHHHHHHHhCCCCCCCCCCCC
Confidence 5556677788888888888887765533
No 50
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=87.40 E-value=20 Score=34.81 Aligned_cols=11 Identities=9% Similarity=0.398 Sum_probs=6.8
Q ss_pred cccCCCchhhh
Q 007579 543 QQLPMNSQMFQ 553 (597)
Q Consensus 543 ~~~~~~~~~fq 553 (597)
-+|-++++.|.
T Consensus 204 C~~~lppq~~~ 214 (256)
T 3na7_A 204 CFIRLNDKIYT 214 (256)
T ss_dssp TCCBCCHHHHH
T ss_pred CCeeeCHHHHH
Confidence 45666776664
No 51
>3cvf_A Homer-3, homer protein homolog 3; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, phosphoprotein, polymorphism; 2.90A {Homo sapiens}
Probab=87.24 E-value=1.2 Score=37.83 Aligned_cols=54 Identities=28% Similarity=0.316 Sum_probs=29.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 007579 467 LQTEATTLSAQLTLLQRDSVGLTNQNNELKFRLQAMEQQAQLRDALNEALTAEVRRLKVAT 527 (597)
Q Consensus 467 LQtEN~tLsaQLtlLqre~~~L~aEN~ELK~RLqaLEqQaqLrdALnEaLkeEVqrLK~a~ 527 (597)
|+.++..+..++. .+..+|.+|+.++..|++++.-...--+.++.|+.+|-..+
T Consensus 4 l~~e~e~~~~klq-------~~E~rN~~Le~~v~~le~~Le~s~~~q~~~~~Elk~l~e~L 57 (79)
T 3cvf_A 4 MAAEREETQQKVQ-------DLETRNAELEHQLRAMERSLEEARAERERARAEVGRAAQLL 57 (79)
T ss_dssp ------CTTHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH-------HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555555554 45567777777777777665555555666666665554433
No 52
>3m9b_A Proteasome-associated ATPase; coil COIL with 5 beta-strand barrel inter domain, chaperone; 3.94A {Mycobacterium tuberculosis} PDB: 3m9d_A
Probab=87.05 E-value=0.67 Score=46.54 Aligned_cols=14 Identities=43% Similarity=0.278 Sum_probs=9.4
Q ss_pred HHHHHHHHHHHHHH
Q 007579 512 LNEALTAEVRRLKV 525 (597)
Q Consensus 512 LnEaLkeEVqrLK~ 525 (597)
..+.|++|+++|+.
T Consensus 83 El~~LkeElerL~s 96 (251)
T 3m9b_A 83 QLLALREEVDRLGQ 96 (251)
T ss_dssp HHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHhcC
Confidence 35567777777765
No 53
>3swy_A Cyclic nucleotide-gated cation channel alpha-3; coiled-coil, assembly domain, transport protein; 1.90A {Homo sapiens}
Probab=86.97 E-value=2.8 Score=32.44 Aligned_cols=44 Identities=30% Similarity=0.416 Sum_probs=31.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007579 459 ELEHKVQTLQTEATTLSAQLTLLQRDSVGLTNQNNELKFRLQAMEQQ 505 (597)
Q Consensus 459 ELE~KVq~LQtEN~tLsaQLtlLqre~~~L~aEN~ELK~RLqaLEqQ 505 (597)
+||.+|..|+.-...|..+++-|-.+ ..+-...||+||..||.+
T Consensus 2 dlEekv~~Le~~ld~LqTr~ArLlae---~~ssq~KlKqRit~lE~~ 45 (46)
T 3swy_A 2 ALEEKVEQLGSSLDTLQTRFARLLAE---YNATQMKMKQRLSQLESQ 45 (46)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHhc
Confidence 57777777777777777766665443 345567899999998865
No 54
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=86.61 E-value=9.6 Score=33.77 Aligned_cols=27 Identities=33% Similarity=0.433 Sum_probs=11.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007579 457 ISELEHKVQTLQTEATTLSAQLTLLQR 483 (597)
Q Consensus 457 IeELE~KVq~LQtEN~tLsaQLtlLqr 483 (597)
|.+|.+.|+.|+.|...|+.+...|+.
T Consensus 38 i~elrr~iq~L~~el~~l~~~~~~LE~ 64 (129)
T 3tnu_B 38 ISEMNRMIQRLRAEIDNVKKQCANLQN 64 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 344444444444444444444443333
No 55
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=86.57 E-value=4.3 Score=42.99 Aligned_cols=46 Identities=15% Similarity=0.192 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCC
Q 007579 487 GLTNQNNELKFRLQAMEQQAQLRDALNEALTAEVRRLKVATQEMASE 533 (597)
Q Consensus 487 ~L~aEN~ELK~RLqaLEqQaqLrdALnEaLkeEVqrLK~a~gEi~~~ 533 (597)
.|+.....||.++..--..++++....+.+..+|+||.+++ ++--.
T Consensus 117 eLe~~i~~lk~~V~~q~~~ir~Lq~~l~~q~~kiqRLE~~I-d~c~~ 162 (390)
T 1deq_A 117 DLRSRIEILRRKVIEQVQRINLLQKNVRDQLVDMKRLEVDI-DIKIR 162 (390)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH-HHHhc
Confidence 34444445555554433455666666777778888888888 44333
No 56
>2ve7_C Kinetochore protein NUF2, kinetochore protein SPC; mitosis, centromere, cell cycle, microtubule, C division, calponin homology; 2.88A {Homo sapiens} PDB: 3iz0_D*
Probab=85.71 E-value=0.94 Score=44.74 Aligned_cols=40 Identities=18% Similarity=0.120 Sum_probs=26.1
Q ss_pred hhccChHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 007579 428 IALTDPKRAKRILANRQSAARSKERKMRYISELEHKVQTL 467 (597)
Q Consensus 428 lAl~DpKR~KRILaNRESAaRSReRKKqYIeELE~KVq~L 467 (597)
|-.-++||.+|+|+-=.-=.|-|+-|..-++++-.+.+.+
T Consensus 114 L~kP~~~Rt~~iLSalINF~~FRE~~~~~~~e~~~~~e~~ 153 (250)
T 2ve7_C 114 ILCPKAKRTSRFLSGIINFIHFREACRETYMEFLWQYKSS 153 (250)
T ss_dssp HHSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHH
T ss_pred hcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445789999998776666666666666555544444433
No 57
>3swf_A CGMP-gated cation channel alpha-1; coiled-coil, assembly domain, transport protein; 2.14A {Bos taurus}
Probab=85.54 E-value=2.5 Score=35.71 Aligned_cols=47 Identities=21% Similarity=0.334 Sum_probs=33.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007579 458 SELEHKVQTLQTEATTLSAQLTLLQRDSVGLTNQNNELKFRLQAMEQQAQ 507 (597)
Q Consensus 458 eELE~KVq~LQtEN~tLsaQLtlLqre~~~L~aEN~ELK~RLqaLEqQaq 507 (597)
++||.||..|+.-...|..+++.|..+ ..+-...||+||..||.++.
T Consensus 3 ~dlEEKv~~LE~sld~LQTrfARLLaE---y~ssQ~KLKqRit~LE~~~~ 49 (74)
T 3swf_A 3 MGLEEKVTRMESSVDLLQTRFARILAE---YESMQQKLKQRLTKVEKFLK 49 (74)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHhc
Confidence 457777877777777777777666544 35566789999999988754
No 58
>1deb_A APC protein, adenomatous polyposis coli protein; coiled coil, tumor suppressor, structural protein; 2.40A {Homo sapiens} SCOP: h.1.18.1
Probab=85.48 E-value=4.4 Score=32.26 Aligned_cols=44 Identities=20% Similarity=0.258 Sum_probs=34.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007579 457 ISELEHKVQTLQTEATTLSAQLTLLQRDSVGLTNQNNELKFRLQ 500 (597)
Q Consensus 457 IeELE~KVq~LQtEN~tLsaQLtlLqre~~~L~aEN~ELK~RLq 500 (597)
.+.|-++|+.|..||..|+.++..-..+...|++|-..+|.=+.
T Consensus 5 YdQL~~QVe~Lk~ENshLrrEL~dNS~~lskLE~ets~mKevlk 48 (54)
T 1deb_A 5 YDQLLKQVEALKMENSNLRQELEDNSNHLTKLETEASNMKEVLK 48 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHhhhhhHHHHHH
Confidence 36788999999999999999988877777777777666665443
No 59
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=85.35 E-value=5 Score=35.57 Aligned_cols=28 Identities=11% Similarity=0.304 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007579 457 ISELEHKVQTLQTEATTLSAQLTLLQRD 484 (597)
Q Consensus 457 IeELE~KVq~LQtEN~tLsaQLtlLqre 484 (597)
|..|+.+++.|+..+..|...|..++..
T Consensus 45 iq~L~~el~~l~~~~~~LE~~l~e~e~~ 72 (129)
T 3tnu_B 45 IQRLRAEIDNVKKQCANLQNAIADAEQR 72 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 4555555555555555555555554443
No 60
>3q8t_A Beclin-1; autophagy, ATG14L uvrag, apoptosis; 1.90A {Rattus norvegicus}
Probab=85.13 E-value=18 Score=31.17 Aligned_cols=73 Identities=11% Similarity=0.211 Sum_probs=37.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007579 452 RKMRYISELEHKVQTLQTEATTLSAQLTLLQRDSVGLTNQNNELKFRLQAMEQQAQLRDALNEALTAEVRRLK 524 (597)
Q Consensus 452 RKKqYIeELE~KVq~LQtEN~tLsaQLtlLqre~~~L~aEN~ELK~RLqaLEqQaqLrdALnEaLkeEVqrLK 524 (597)
+-.+-+.+||..-..|..+...+..+...|..+-...-.+-+.++.++-.+..+....+.........+.+|+
T Consensus 22 ~L~~eL~~lEke~~~l~~el~~le~E~~~L~~eE~~~w~eyn~~~~ql~e~~dE~~Sl~~q~~~~~~qLdkL~ 94 (96)
T 3q8t_A 22 RLIQELEDVEKNRKVVAENLEKVQAEAERLDQEEAQYQREYSEFKRQQLELDDELKSVENQMRYAQMQLDKLK 94 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3344455555555555555555555555554444444445555555555555555555555555555555554
No 61
>3jsv_C NF-kappa-B essential modulator; ubiquitin, coiled-coil, cellular signaling, cytoplasm, isopeptide bond, nucleus, phosphoprotein, UBL conjugation; 2.70A {Mus musculus} PDB: 3f89_A 2zvo_B 2zvn_B
Probab=85.06 E-value=5.6 Score=34.87 Aligned_cols=66 Identities=17% Similarity=0.180 Sum_probs=45.2
Q ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007579 440 LANRQSAARSKERKMRYISELEHKVQTLQ---TEATTLSAQLTLLQRDSVGLTNQNNELKFRLQAMEQQ 505 (597)
Q Consensus 440 LaNRESAaRSReRKKqYIeELE~KVq~LQ---tEN~tLsaQLtlLqre~~~L~aEN~ELK~RLqaLEqQ 505 (597)
..|-.+|-..=..|+..|++|..++..+. ..+.-|.+|+.....++..=.+.-..+..+.+.|..+
T Consensus 8 ~~~L~~aEeaL~~kq~~id~lke~~~q~~~~~E~i~vLk~Qv~IY~~DF~aERadREkl~~eKe~L~~q 76 (94)
T 3jsv_C 8 RQQLQQAEEALVAKQELIDKLKEEAEQHKIVMETVPVLKAQADIYKADFQAERHAREKLVEKKEYLQEQ 76 (94)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSHHHHH
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 34556676777778888888888887777 5666788888888877766555555555555555444
No 62
>3he5_A Synzip1; heterodimeric coiled-coil, de novo protein; 1.75A {Artificial gene}
Probab=84.92 E-value=3.3 Score=31.87 Aligned_cols=21 Identities=33% Similarity=0.599 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 007579 457 ISELEHKVQTLQTEATTLSAQ 477 (597)
Q Consensus 457 IeELE~KVq~LQtEN~tLsaQ 477 (597)
+..||.+|..|+.||.+|+.+
T Consensus 5 vaqlenevaslenenetlkkk 25 (49)
T 3he5_A 5 VAQLENEVASLENENETLKKK 25 (49)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhcccHHHHHh
Confidence 455666666666666665543
No 63
>3bas_A Myosin heavy chain, striated muscle/general control protein GCN4 chimera; alpha-helical coiled coil, disorder, salt links; 2.30A {Argopecten irradians} SCOP: h.1.26.1 PDB: 1nkn_A 3bat_A
Probab=84.83 E-value=17 Score=30.68 Aligned_cols=48 Identities=21% Similarity=0.254 Sum_probs=35.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007579 457 ISELEHKVQTLQTEATTLSAQLTLLQRDSVGLTNQNNELKFRLQAMEQ 504 (597)
Q Consensus 457 IeELE~KVq~LQtEN~tLsaQLtlLqre~~~L~aEN~ELK~RLqaLEq 504 (597)
..+||.+...|..+.+.|..+++.++..+..|.....+|..+|..|+.
T Consensus 37 rkele~~~~~l~~ek~~L~~ql~eaEe~~~~L~~~K~eLE~~l~el~~ 84 (89)
T 3bas_A 37 KKELEEQNVTLLEQKNDLFGSMKQLEDKVEELLSKNYHLENEVARLKK 84 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356777777777777777777777777777777777777777766643
No 64
>3swk_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural; 1.70A {Homo sapiens}
Probab=84.81 E-value=6.1 Score=33.41 Aligned_cols=68 Identities=18% Similarity=0.173 Sum_probs=35.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007579 458 SELEHKVQTLQTEATTLSAQLTLLQRD--------------SVGLTNQNNELKFRLQAMEQQAQLRDALNEALTAEVRRL 523 (597)
Q Consensus 458 eELE~KVq~LQtEN~tLsaQLtlLqre--------------~~~L~aEN~ELK~RLqaLEqQaqLrdALnEaLkeEVqrL 523 (597)
.+|..++..+..++..|..++..++.. .+.+.++-..||.-+..+.-...-.++..+.|++||.-|
T Consensus 3 ~eLr~qi~~l~~e~~~l~~e~dn~~~~~edfk~KyE~E~~~R~~~E~d~~~LrkdvD~a~l~r~dLE~kvesL~eEl~fL 82 (86)
T 3swk_A 3 RELRRQVDQLTNDKARVEVERDNLAEDIMRLREKLQEEMLQREEAENTLQSFRQDVDNASLARLDLERKVESLQEEIAFL 82 (86)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555555555555554444444332 333444444555555544444444456677777777766
Q ss_pred HH
Q 007579 524 KV 525 (597)
Q Consensus 524 K~ 525 (597)
|.
T Consensus 83 kk 84 (86)
T 3swk_A 83 KK 84 (86)
T ss_dssp TT
T ss_pred hh
Confidence 53
No 65
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A
Probab=83.93 E-value=4.5 Score=36.80 Aligned_cols=35 Identities=26% Similarity=0.220 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 007579 493 NELKFRLQAMEQQAQLRDALNEALTAEVRRLKVAT 527 (597)
Q Consensus 493 ~ELK~RLqaLEqQaqLrdALnEaLkeEVqrLK~a~ 527 (597)
.+|+-.|..|.++++-..+..|.|+++.+-|..-+
T Consensus 74 qeLqgEI~~Lnq~Lq~a~ae~erlr~~~~~~~~r~ 108 (121)
T 3mq7_A 74 EELEGEITTLNHKLQDASAEVERLRRENQVLSVRI 108 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhchhhhhHh
Confidence 33333444444443333444445555555444444
No 66
>1wle_A Seryl-tRNA synthetase; ligase; HET: SRP; 1.65A {Bos taurus}
Probab=83.78 E-value=9.5 Score=41.19 Aligned_cols=47 Identities=15% Similarity=0.291 Sum_probs=25.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHH
Q 007579 460 LEHKVQTLQTEATTLSAQLTLLQR-----------DSVGLTNQNNELKFRLQAMEQQA 506 (597)
Q Consensus 460 LE~KVq~LQtEN~tLsaQLtlLqr-----------e~~~L~aEN~ELK~RLqaLEqQa 506 (597)
|..+++.|+.+.+.++++|..+.. +...|..+-++|+.+|..|+.++
T Consensus 82 ~~~~~~~l~~~rn~~sk~i~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~i~~l~~~~ 139 (501)
T 1wle_A 82 LREQIRSLEEEKEAVTEAVRALVVNQDNSQVQQDPQYQSLRARGREIRKQLTLLYPKE 139 (501)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCCTTGGGCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcCccccccccccHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555555555554432 23456666666666666665443
No 67
>3i00_A HIP-I, huntingtin-interacting protein 1; transcription; 2.30A {Homo sapiens} PDB: 2qa7_A
Probab=83.73 E-value=15 Score=33.09 Aligned_cols=17 Identities=24% Similarity=0.436 Sum_probs=6.6
Q ss_pred HHHHHHHHHHHHHHHHH
Q 007579 454 MRYISELEHKVQTLQTE 470 (597)
Q Consensus 454 KqYIeELE~KVq~LQtE 470 (597)
+.||.+|+.+|..|+.|
T Consensus 39 q~~v~ql~~~i~~Le~e 55 (120)
T 3i00_A 39 QRVVLQLKGHVSELEAD 55 (120)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33344444444333333
No 68
>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=83.64 E-value=9.4 Score=33.99 Aligned_cols=26 Identities=31% Similarity=0.350 Sum_probs=10.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007579 457 ISELEHKVQTLQTEATTLSAQLTLLQ 482 (597)
Q Consensus 457 IeELE~KVq~LQtEN~tLsaQLtlLq 482 (597)
|.+|.+.|+.|+.|...|+.+...|+
T Consensus 40 i~elrr~iq~L~~el~~l~~~~~sLE 65 (131)
T 3tnu_A 40 ISELRRTMQNLEIELQSQLSMKASLE 65 (131)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHH
Confidence 33444444444444444433333333
No 69
>3bas_A Myosin heavy chain, striated muscle/general control protein GCN4 chimera; alpha-helical coiled coil, disorder, salt links; 2.30A {Argopecten irradians} SCOP: h.1.26.1 PDB: 1nkn_A 3bat_A
Probab=83.46 E-value=8.2 Score=32.58 Aligned_cols=72 Identities=21% Similarity=0.223 Sum_probs=42.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007579 453 KMRYISELEHKVQTLQTEATTLSAQLTLLQRDSVGLTNQNNELKFRLQAMEQQAQLRDALNEALTAEVRRLK 524 (597)
Q Consensus 453 KKqYIeELE~KVq~LQtEN~tLsaQLtlLqre~~~L~aEN~ELK~RLqaLEqQaqLrdALnEaLkeEVqrLK 524 (597)
.-..+..++.+++.|+............|+..+..|..+.+.|..++...+..+.-..+....|...|..|.
T Consensus 12 ~eeEm~~~eeel~~lke~l~k~e~~rkele~~~~~l~~ek~~L~~ql~eaEe~~~~L~~~K~eLE~~l~el~ 83 (89)
T 3bas_A 12 QEEEMKEQLKQMDKMKEDLAKTERIKKELEEQNVTLLEQKNDLFGSMKQLEDKVEELLSKNYHLENEVARLK 83 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555666666666666666666666677777777777777766665555554444444444444444443
No 70
>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA, protein-DNA complex; HET: DNA; 3.0A {Homo sapiens} SCOP: h.1.3.1
Probab=83.33 E-value=9.3 Score=32.77 Aligned_cols=41 Identities=20% Similarity=0.299 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCC
Q 007579 479 TLLQRDSVGLTNQNNELKFRLQAMEQQAQLRDALNEALTAEVRRLKVATQEMASE 533 (597)
Q Consensus 479 tlLqre~~~L~aEN~ELK~RLqaLEqQaqLrdALnEaLkeEVqrLK~a~gEi~~~ 533 (597)
..++.....|..||..|+.+|+. |+.|+..|+..+-++++.
T Consensus 39 ~e~~~r~~~Le~EN~~Lr~~v~~--------------L~~E~~~Lr~ll~~~p~~ 79 (87)
T 1hjb_A 39 LETQHKVLELTAENERLQKKVEQ--------------LSRELSTLRNLFKQLPEP 79 (87)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHC----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHCcHH
Confidence 34445555566666666666553 456666777766666654
No 71
>2oxj_A Hybrid alpha/beta peptide based on the GCN4-P1 Se heptad positions B and F substituted...; helix bundle, foldamer, unknown function; HET: B3K B3D B3E B3S B3Y B3X B3A BAL; 2.00A {Synthetic} PDB: 2oxk_A*
Probab=83.22 E-value=1.4 Score=32.38 Aligned_cols=28 Identities=25% Similarity=0.223 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007579 456 YISELEHKVQTLQTEATTLSAQLTLLQR 483 (597)
Q Consensus 456 YIeELE~KVq~LQtEN~tLsaQLtlLqr 483 (597)
.+..||.||+.|-.+|..|..++..|+.
T Consensus 2 RMnQLE~kVEeLl~~n~~Le~eV~rLk~ 29 (34)
T 2oxj_A 2 RMXQLEXKVXELLXKNXHLEXEVXRLKX 29 (34)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhhhhHHHHHHHHHH
Confidence 4678999999999999998888877654
No 72
>4ath_A MITF, microphthalmia-associated transcription factor; DNA binding protein, melanoma; HET: MSE; 1.95A {Mus musculus}
Probab=83.19 E-value=4 Score=34.97 Aligned_cols=44 Identities=27% Similarity=0.386 Sum_probs=32.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007579 454 MRYISELEHKVQTLQTEATTLSAQLTLLQRDSVGLTNQNNELKFRLQAMEQQAQL 508 (597)
Q Consensus 454 KqYIeELE~KVq~LQtEN~tLsaQLtlLqre~~~L~aEN~ELK~RLqaLEqQaqL 508 (597)
-.||..|..+++.+..+. .....|...|+.|..|+++||.|++.
T Consensus 38 vdYI~~Lq~e~~r~~e~e-----------~r~k~le~~n~~l~~riqELE~qa~~ 81 (83)
T 4ath_A 38 VDYIRKLQREQQRAKDLE-----------NRQKKLEHANRHLLLRVQELEMQARA 81 (83)
T ss_dssp HHHHHHHHHTHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH-----------HHHHHhhhhhHHHHHHHHHHHHHHHH
Confidence 678888877766554433 33446788999999999999988763
No 73
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=82.64 E-value=12 Score=38.46 Aligned_cols=37 Identities=14% Similarity=0.109 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007579 469 TEATTLSAQLTLLQRDSVGLTNQNNELKFRLQAMEQQ 505 (597)
Q Consensus 469 tEN~tLsaQLtlLqre~~~L~aEN~ELK~RLqaLEqQ 505 (597)
.|-..+.+..+..+++...|..||..|+..++.+..+
T Consensus 428 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 464 (487)
T 3oja_A 428 SVQNNAIRDWDMYQHKETQLAEENARLKKLNGEADLA 464 (487)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhhcchhhhhhhhhHHHHHHHHhhhhhhhhhhhhhh
Confidence 3333344444444444445555555555555544333
No 74
>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=82.39 E-value=5.8 Score=35.33 Aligned_cols=29 Identities=17% Similarity=0.190 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007579 456 YISELEHKVQTLQTEATTLSAQLTLLQRD 484 (597)
Q Consensus 456 YIeELE~KVq~LQtEN~tLsaQLtlLqre 484 (597)
-|..|+.+++.|...+..|...|..++..
T Consensus 46 ~iq~L~~el~~l~~~~~sLE~~l~e~e~~ 74 (131)
T 3tnu_A 46 TMQNLEIELQSQLSMKASLENSLEETKGR 74 (131)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 45666666666666666666666655544
No 75
>3m48_A General control protein GCN4; leucine zipper, synthetic peptide, alpha helix, activa amino-acid biosynthesis, DNA-binding, nucleus; 1.45A {Synthetic} PDB: 3i1g_A 2ahp_A* 2o7h_A
Probab=82.33 E-value=1.4 Score=32.26 Aligned_cols=27 Identities=26% Similarity=0.447 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007579 457 ISELEHKVQTLQTEATTLSAQLTLLQR 483 (597)
Q Consensus 457 IeELE~KVq~LQtEN~tLsaQLtlLqr 483 (597)
+..||.||+.|-.+|..|..+|..|+.
T Consensus 2 M~QLE~kVEeLl~~n~~Le~EV~RLk~ 28 (33)
T 3m48_A 2 MAQLEAKVEELLSKNWNLENEVARLKK 28 (33)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 567999999999999999998877654
No 76
>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus}
Probab=82.29 E-value=23 Score=30.29 Aligned_cols=70 Identities=16% Similarity=0.172 Sum_probs=43.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007579 454 MRYISELEHKVQTLQTEATTLSAQLTLLQRDSVGLTNQNNELKFRLQAMEQQAQLRDALNEALTAEVRRL 523 (597)
Q Consensus 454 KqYIeELE~KVq~LQtEN~tLsaQLtlLqre~~~L~aEN~ELK~RLqaLEqQaqLrdALnEaLkeEVqrL 523 (597)
..-+.++|.+...++.+...|..++..|+.++..+...-..+...|..-+..+.-.++-..+|..-|+-|
T Consensus 29 e~~~k~~e~~~~~~E~ei~sL~kKiq~lE~eld~~~e~l~~a~~kLe~~ek~~~~AE~evasLnRriqll 98 (101)
T 3u59_A 29 EADKKQAEDRCKQLEEEQQGLQKKLKGTEDEVEKYSESVKEAQEKLEQAEKKATDAEAEVASLNRRIQLV 98 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344555666666666666666666666666666666666666666666655555556666665555543
No 77
>3q8t_A Beclin-1; autophagy, ATG14L uvrag, apoptosis; 1.90A {Rattus norvegicus}
Probab=82.27 E-value=19 Score=31.00 Aligned_cols=49 Identities=12% Similarity=0.258 Sum_probs=39.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007579 457 ISELEHKVQTLQTEATTLSAQLTLLQRDSVGLTNQNNELKFRLQAMEQQ 505 (597)
Q Consensus 457 IeELE~KVq~LQtEN~tLsaQLtlLqre~~~L~aEN~ELK~RLqaLEqQ 505 (597)
++.|+.+++.|+.+-..|..+|..|+++...|..+...++..+..|.++
T Consensus 6 ~~~l~~eL~~l~~eE~~L~~eL~~lEke~~~l~~el~~le~E~~~L~~e 54 (96)
T 3q8t_A 6 SEQLQRELKELALEEERLIQELEDVEKNRKVVAENLEKVQAEAERLDQE 54 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhH
Confidence 4678888888888888888888888888888888888888877777544
No 78
>2v4h_A NF-kappa-B essential modulator; transcription, metal-binding, NEMO - IKK gamma - NFKB pathwa darpin, transcription regulation; 2.9A {Mus musculus}
Probab=81.97 E-value=14 Score=33.17 Aligned_cols=61 Identities=16% Similarity=0.171 Sum_probs=38.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007579 442 NRQSAARSKERKMRYISELEHKVQTLQT---EATTLSAQLTLLQRDSVGLTNQNNELKFRLQAM 502 (597)
Q Consensus 442 NRESAaRSReRKKqYIeELE~KVq~LQt---EN~tLsaQLtlLqre~~~L~aEN~ELK~RLqaL 502 (597)
|=.+|...=..|+..|++|+.++..+.. .+.-|++|+.....++..=.+.-..+..+.+.|
T Consensus 32 ~L~~AEeaL~~Kq~~idelk~ei~q~~~~lE~I~vLkaQv~IY~~DF~aERadREkl~~eKe~L 95 (110)
T 2v4h_A 32 QLQQAEEALVAKQELIDKLKEEAEQHKIVMETVPVLKAQADIYKADFQAERHAREKLVEKKEYL 95 (110)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchhhHHHHHhHHHHH
Confidence 3345555556688888888888887776 566677777777766655444333344443333
No 79
>3cve_A Homer protein homolog 1; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, postsynaptic cell membrane, synapse; 1.75A {Rattus norvegicus}
Probab=81.91 E-value=6.1 Score=33.08 Aligned_cols=41 Identities=20% Similarity=0.285 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007579 484 DSVGLTNQNNELKFRLQAMEQQAQLRDALNEALTAEVRRLK 524 (597)
Q Consensus 484 e~~~L~aEN~ELK~RLqaLEqQaqLrdALnEaLkeEVqrLK 524 (597)
....+..+|.+|+.++..|++++.-...--+.++.|+.+|-
T Consensus 8 kLq~~E~~N~~Le~~v~~le~~Le~s~~~q~~~~~Elk~~~ 48 (72)
T 3cve_A 8 KLQEVEIRNKDLEGQLSEMEQRLEKSQSEQDAFRSNLKTLL 48 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445556666666666665554443334444555554443
No 80
>2oto_A M protein; helical coiled coil, fibrinogen-binding, virulence factor, S active protein, toxin; 3.04A {Streptococcus pyogenes serotype M1} PDB: 2xny_M
Probab=81.76 E-value=21 Score=32.39 Aligned_cols=27 Identities=37% Similarity=0.476 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007579 459 ELEHKVQTLQTEATTLSAQLTLLQRDS 485 (597)
Q Consensus 459 ELE~KVq~LQtEN~tLsaQLtlLqre~ 485 (597)
+|+.+++.|+.+|..|..++..++.++
T Consensus 54 eL~~~~~~Le~~n~~L~~~lke~~~~~ 80 (155)
T 2oto_A 54 ELEKAKQALEDQRKDLETKLKELQQDY 80 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444444333
No 81
>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B
Probab=81.74 E-value=1.6 Score=35.94 Aligned_cols=29 Identities=31% Similarity=0.390 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007579 454 MRYISELEHKVQTLQTEATTLSAQLTLLQ 482 (597)
Q Consensus 454 KqYIeELE~KVq~LQtEN~tLsaQLtlLq 482 (597)
..||..|+.+++.|+.+...|..++..|+
T Consensus 46 i~YI~~L~~~~~~l~~e~~~L~~~~~~L~ 74 (83)
T 1nkp_B 46 TEYIQYMRRKNHTHQQDIDDLKRQNALLE 74 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45777777777766655555554444333
No 82
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=81.30 E-value=4.2 Score=42.46 Aligned_cols=48 Identities=17% Similarity=0.199 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 007579 473 TLSAQLTLLQRDSVGLTNQNNELKFRLQAMEQQAQLRDALNEALTAEVRRLKVAT 527 (597)
Q Consensus 473 tLsaQLtlLqre~~~L~aEN~ELK~RLqaLEqQaqLrdALnEaLkeEVqrLK~a~ 527 (597)
.|..++..|+++...+..++.+|+.++.. .+.+...|..+++.||-.+
T Consensus 14 ~l~~~~~~l~~~~~~~~~~~~~~~~~~~~-------~~~~rr~l~n~~~elkgnI 61 (403)
T 4etp_A 14 ALKEKIAALKEKIKDTELGMKELNEILIK-------EETVRRTLHNELQELRGNI 61 (403)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHCSE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHcCCCe
Confidence 33333333333333444445555544433 3334445566777777544
No 83
>2v66_B Nuclear distribution protein NUDE-like 1; structural protein, developmental protein, structural protei phosphorylation, transport, microtubule; 2.10A {Homo sapiens}
Probab=81.02 E-value=30 Score=30.92 Aligned_cols=49 Identities=18% Similarity=0.229 Sum_probs=33.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007579 457 ISELEHKVQTLQTEATTLSAQLTLLQRDSVGLTNQNNELKFRLQAMEQQ 505 (597)
Q Consensus 457 IeELE~KVq~LQtEN~tLsaQLtlLqre~~~L~aEN~ELK~RLqaLEqQ 505 (597)
+..|+.++..|..++..|...|-.|+..++.|....+....-|+.|+..
T Consensus 37 ~~~Lq~El~~lr~~~~~l~~~iReLEq~NDDLER~~R~t~~SLeD~E~k 85 (111)
T 2v66_B 37 VSVLEDDLSQTRAIKEQLHKYVRELEQANDDLERAKRATIVSLEDFEQR 85 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHhhHHHHHHH
Confidence 5557777777777777777777777777777777776666666666544
No 84
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}
Probab=80.94 E-value=39 Score=32.17 Aligned_cols=58 Identities=21% Similarity=0.320 Sum_probs=38.1
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007579 441 ANRQSAARSKERKMRYISELEHKVQTLQTEATTLSAQLTLLQRDSVGLTNQNNELKFRLQAMEQQ 505 (597)
Q Consensus 441 aNRESAaRSReRKKqYIeELE~KVq~LQtEN~tLsaQLtlLqre~~~L~aEN~ELK~RLqaLEqQ 505 (597)
+-=+.=++.|.+-.+-+.+|+.++..|+.|...++..+..+. .+|+.|..+|..||..
T Consensus 76 a~L~qEr~~r~q~se~~~elq~ri~~L~~El~~~k~~~~k~~-------~e~r~L~Ekl~~lEKe 133 (168)
T 3o0z_A 76 AILEAERRDRGHDSEMIGDLQARITSLQEEVKHLKHNLEKVE-------GERKEAQDMLNHSEKE 133 (168)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHH
Confidence 333444566677777778888888888887777777665554 4555555555555544
No 85
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=80.92 E-value=5 Score=44.14 Aligned_cols=50 Identities=14% Similarity=0.221 Sum_probs=34.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007579 447 ARSKERKMRYISELEHKVQTLQTEATTLSAQLTLLQRDSVGLTNQNNELK 496 (597)
Q Consensus 447 aRSReRKKqYIeELE~KVq~LQtEN~tLsaQLtlLqre~~~L~aEN~ELK 496 (597)
......+.+|.+|||++++.|+.++..-..+|..||..+..+..+.+.|.
T Consensus 102 ~dNdNtynE~S~ELRRrIqyLKekVdnQlsnIrvLQsnLedq~~kIQRLE 151 (562)
T 3ghg_A 102 NNRDNTYNRVSEDLRSRIEVLKRKVIEKVQHIQLLQKNVRAQLVDMKRLE 151 (562)
T ss_dssp HHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35556778888899999998888887766777777665544444433333
No 86
>1gu4_A CAAT/enhancer binding protein beta; transcription/DNA, protein-DNA complex, transcription factor, BZIP, C/EBP; 1.80A {Homo sapiens} SCOP: h.1.3.1 PDB: 1gtw_A 1gu5_A 1h88_A 1h8a_A 1io4_A 2e43_A* 2e42_A* 1h89_A 1ci6_B 1nwq_A
Probab=80.65 E-value=11 Score=31.74 Aligned_cols=21 Identities=24% Similarity=0.336 Sum_probs=10.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 007579 480 LLQRDSVGLTNQNNELKFRLQ 500 (597)
Q Consensus 480 lLqre~~~L~aEN~ELK~RLq 500 (597)
.++.....|..||..|+.+|+
T Consensus 40 e~~~r~~~L~~eN~~L~~~v~ 60 (78)
T 1gu4_A 40 ETQHKVLELTAENERLQKKVE 60 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 334444445555555555444
No 87
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=80.32 E-value=2.5 Score=37.25 Aligned_cols=16 Identities=25% Similarity=0.212 Sum_probs=6.4
Q ss_pred HHHHHHHHHHHHHHHH
Q 007579 486 VGLTNQNNELKFRLQA 501 (597)
Q Consensus 486 ~~L~aEN~ELK~RLqa 501 (597)
..|..|+..||.++..
T Consensus 78 e~Lq~E~erLr~~v~~ 93 (100)
T 1go4_E 78 SQLQAECERLRGLLRA 93 (100)
T ss_dssp HHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3333444444444433
No 88
>1kd8_B GABH BLL, GCN4 acid base heterodimer base-D12LA16L; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kd9_B 1kdd_B
Probab=80.21 E-value=2.4 Score=31.46 Aligned_cols=29 Identities=21% Similarity=0.378 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007579 456 YISELEHKVQTLQTEATTLSAQLTLLQRD 484 (597)
Q Consensus 456 YIeELE~KVq~LQtEN~tLsaQLtlLqre 484 (597)
.+..||.||+.|-.++..|..++..|+.-
T Consensus 2 RMnQLE~KVEeLl~~~~~Le~eV~RLk~l 30 (36)
T 1kd8_B 2 KVKQLKAKVEELKSKLWHLKNKVARLKKK 30 (36)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 36789999999999998888888777653
No 89
>2dq0_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: SSA; 2.60A {Pyrococcus horikoshii} PDB: 2dq1_A* 2dq2_A 2zr2_A* 2zr3_A
Probab=80.10 E-value=11 Score=39.90 Aligned_cols=34 Identities=15% Similarity=0.158 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007579 462 HKVQTLQTEATTLSAQLTLLQRDSVGLTNQNNEL 495 (597)
Q Consensus 462 ~KVq~LQtEN~tLsaQLtlLqre~~~L~aEN~EL 495 (597)
.++-.|..+-..|..++..|+.+...+..+-..+
T Consensus 31 ~~~~~l~~~~r~~~~~~~~l~~~~n~~sk~i~~~ 64 (455)
T 2dq0_A 31 DEILKLDTEWRTKLKEINRLRHERNKIAVEIGKR 64 (455)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4455555555555555555555555544444443
No 90
>2v4h_A NF-kappa-B essential modulator; transcription, metal-binding, NEMO - IKK gamma - NFKB pathwa darpin, transcription regulation; 2.9A {Mus musculus}
Probab=79.99 E-value=26 Score=31.55 Aligned_cols=13 Identities=23% Similarity=0.238 Sum_probs=5.3
Q ss_pred HHHHHHHHHHHHH
Q 007579 513 NEALTAEVRRLKV 525 (597)
Q Consensus 513 nEaLkeEVqrLK~ 525 (597)
.|.+..|.+.|..
T Consensus 85 REkl~~eKe~L~~ 97 (110)
T 2v4h_A 85 REKLVEKKEYLQE 97 (110)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHhHHHHHHH
Confidence 3334444444443
No 91
>3c3f_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-alpha-beta) backbone...; helix bundle, foldamer, unknown function, de novo protein; HET: B3K B3D B3E BIL B3L BAL; 2.00A {Synthetic} SCOP: h.1.3.1
Probab=79.73 E-value=2.2 Score=31.32 Aligned_cols=28 Identities=7% Similarity=0.195 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007579 456 YISELEHKVQTLQTEATTLSAQLTLLQR 483 (597)
Q Consensus 456 YIeELE~KVq~LQtEN~tLsaQLtlLqr 483 (597)
.+..||.||+.|-.++..|..++..|+.
T Consensus 2 RMnQLEdKVEeLl~~~~~Le~EV~RLk~ 29 (34)
T 3c3f_A 2 RMXQIEXKLEXILSXLYHXENEXARIXK 29 (34)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHhhhhHHHHHHHHHHH
Confidence 4678999999999999999888877654
No 92
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=79.72 E-value=24 Score=45.95 Aligned_cols=30 Identities=17% Similarity=0.297 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007579 476 AQLTLLQRDSVGLTNQNNELKFRLQAMEQQ 505 (597)
Q Consensus 476 aQLtlLqre~~~L~aEN~ELK~RLqaLEqQ 505 (597)
++++.++.++...+.+..+++.+|++++.+
T Consensus 2014 ~~l~~ae~~l~~~~~~L~~~~~~L~~le~~ 2043 (3245)
T 3vkg_A 2014 EEVEQLENAANELKLKQDEIVATITALEKS 2043 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444444444444
No 93
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=79.69 E-value=4.7 Score=32.23 Aligned_cols=30 Identities=23% Similarity=0.337 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007579 476 AQLTLLQRDSVGLTNQNNELKFRLQAMEQQ 505 (597)
Q Consensus 476 aQLtlLqre~~~L~aEN~ELK~RLqaLEqQ 505 (597)
.++..|+.+...|..+|.+|+.++..|+.+
T Consensus 23 ~~~~~le~~~~~L~~~N~~L~~~i~~L~~E 52 (63)
T 1ci6_A 23 AEQEALTGECKELEKKNEALKERADSLAKE 52 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566666677777777777777766554
No 94
>3u06_A Protein claret segregational; motor domain, stalk rotation, power stroke, kinesin-14, MICR binding, NCD, transport, molecular motor; HET: ADP GOL; 2.35A {Drosophila melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A*
Probab=79.24 E-value=4.8 Score=42.32 Aligned_cols=56 Identities=20% Similarity=0.119 Sum_probs=29.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 007579 465 QTLQTEATTLSAQLTLLQRDSVGLTNQNNELKFRLQAMEQQAQLRDALNEALTAEVRRLKVAT 527 (597)
Q Consensus 465 q~LQtEN~tLsaQLtlLqre~~~L~aEN~ELK~RLqaLEqQaqLrdALnEaLkeEVqrLK~a~ 527 (597)
..|+.|..+|.+++..|+++...+..++.+++++|.. .+.+...|..+++.|+-.+
T Consensus 6 ~~l~~el~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~-------~~~~rr~l~n~~~~l~gnI 61 (412)
T 3u06_A 6 AALSTEVVHLRQRTEELLRCNEQQAAELETCKEQLFQ-------SNMERKELHNTVMDLRDNI 61 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHTCSE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHhCCCE
Confidence 3444555555555555555555555555555555433 3344445556666666543
No 95
>4emc_A Monopolin complex subunit CSM1; RWD domain, kinetochore-binding, kinetoch replication-replication complex; 3.05A {Saccharomyces cerevisiae} PDB: 3n7n_A 3n4x_A
Probab=79.01 E-value=8.1 Score=37.53 Aligned_cols=45 Identities=20% Similarity=0.253 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007579 455 RYISELEHKVQTLQTEATTLSAQLTLLQRDSVGLTNQNNELKFRLQAMEQQA 506 (597)
Q Consensus 455 qYIeELE~KVq~LQtEN~tLsaQLtlLqre~~~L~aEN~ELK~RLqaLEqQa 506 (597)
+.++.-..-|+.|+.||..|..++..... |+..|+.+|+.++.+.
T Consensus 13 ~ql~~ad~LV~~L~~En~~L~~ql~~k~~-------ei~~L~~ql~sl~~~~ 57 (190)
T 4emc_A 13 QQIDSADLLVANLVNENFVLSEKLDTKAT-------EIKQLQKQIDSLNAQV 57 (190)
T ss_dssp -------CHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHhhh
Confidence 33444455677777777777777765554 4444444555554443
No 96
>3c3g_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-beta) backbone; helix bundle, foldamer, unknown function protein; HET: HMR B3Q B3D B3E B3L BIL B3K BAL GOL; 1.80A {Synthetic} PDB: 3heu_A* 3het_A* 3hev_A* 3hew_A* 3hey_A* 3hex_A* 3c3h_A*
Probab=78.39 E-value=3.4 Score=30.20 Aligned_cols=27 Identities=11% Similarity=0.276 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007579 457 ISELEHKVQTLQTEATTLSAQLTLLQR 483 (597)
Q Consensus 457 IeELE~KVq~LQtEN~tLsaQLtlLqr 483 (597)
+..||.||+.|-.+|..|..+++.|+.
T Consensus 2 MnQLEdKvEeLl~~~~~Le~EV~RLk~ 28 (33)
T 3c3g_A 2 MKXIEXKLXEIXSKXYHXENXLARIKX 28 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 568999999999999998888877654
No 97
>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1
Probab=78.09 E-value=4.5 Score=33.46 Aligned_cols=34 Identities=21% Similarity=0.365 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007579 472 TTLSAQLTLLQRDSVGLTNQNNELKFRLQAMEQQ 505 (597)
Q Consensus 472 ~tLsaQLtlLqre~~~L~aEN~ELK~RLqaLEqQ 505 (597)
..|..+|..|+..+..|..||..|+.++..|..+
T Consensus 32 ~~LE~~v~~le~~~~~l~~en~~Lr~~i~~L~~E 65 (70)
T 1gd2_E 32 KALETQVVTLKELHSSTTLENDQLRQKVRQLEEE 65 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555556666777777777777666443
No 98
>1kd8_A GABH AIV, GCN4 acid base heterodimer acid-D12IA16V; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kdd_A 1kd9_A
Probab=78.07 E-value=2.2 Score=31.67 Aligned_cols=28 Identities=21% Similarity=0.486 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007579 457 ISELEHKVQTLQTEATTLSAQLTLLQRD 484 (597)
Q Consensus 457 IeELE~KVq~LQtEN~tLsaQLtlLqre 484 (597)
+..||.||+.|..++..|..++..|+.-
T Consensus 3 MnQLE~kVEeLl~~~~~Le~EV~RL~~l 30 (36)
T 1kd8_A 3 VKQLEAEVEEIESEVWHLENEVARLEKE 30 (36)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 5679999999999888888888777653
No 99
>1nlw_A MAD protein, MAX dimerizer; transcription factor, DNA, BHLHZ, transcription/DNA complex; 2.00A {Homo sapiens} SCOP: a.38.1.1
Probab=77.57 E-value=3.9 Score=34.13 Aligned_cols=32 Identities=19% Similarity=0.174 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007579 453 KMRYISELEHKVQTLQTEATTLSAQLTLLQRD 484 (597)
Q Consensus 453 KKqYIeELE~KVq~LQtEN~tLsaQLtlLqre 484 (597)
-..||..|+.+.+.|+.|...|..++..|+.+
T Consensus 45 A~~yI~~L~~~~~~l~~e~~~L~~e~~~L~~~ 76 (80)
T 1nlw_A 45 AKLHIKKLEDSDRKAVHQIDQLQREQRHLKRQ 76 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35888888888888877777666666555543
No 100
>3qne_A Seryl-tRNA synthetase, cytoplasmic; amino acid biosynthesis, CTG-clade, codon ambiguity, pathoge II aminoacyl-tRNA synthetase family; 2.00A {Candida albicans} PDB: 3qo7_A* 3qo8_A* 3qo5_A
Probab=77.44 E-value=8.7 Score=41.50 Aligned_cols=55 Identities=15% Similarity=0.087 Sum_probs=32.7
Q ss_pred ChHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007579 432 DPKRAKRILANRQSAARSKERKMRYISELEHKVQTLQTEATTLSAQLTLLQRDSVGLTN 490 (597)
Q Consensus 432 DpKR~KRILaNRESAaRSReRKKqYIeELE~KVq~LQtEN~tLsaQLtlLqre~~~L~a 490 (597)
+|..++..|++|-... --...+.+|..+...|+.+...|+++...+.++...++.
T Consensus 14 n~~~v~~~~~~R~~~~----~~~~~~~~ld~~~r~~~~~~~~l~~~rn~~sk~i~~~k~ 68 (485)
T 3qne_A 14 DPEIIKASQKKRGDSV----ELVDEIIAEYKEWVKLRFDLDEHNKKLNSVQKEIGKRFK 68 (485)
T ss_dssp CHHHHHHHHHHHTCCS----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCCH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 5566666666664210 013445666777777777777777777777666655543
No 101
>2dq3_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, nationa on protein structural and functional analyses; HET: SSA; 3.00A {Aquifex aeolicus}
Probab=77.44 E-value=5 Score=42.07 Aligned_cols=97 Identities=16% Similarity=0.224 Sum_probs=53.6
Q ss_pred ChHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHH
Q 007579 432 DPKRAKRILANRQSAARSKERKMRYISELEHKVQTLQTEATTLSAQLTLLQRDSV----------GLTNQNNELKFRLQA 501 (597)
Q Consensus 432 DpKR~KRILaNRESAaRSReRKKqYIeELE~KVq~LQtEN~tLsaQLtlLqre~~----------~L~aEN~ELK~RLqa 501 (597)
++..+++.+++|-... .--...+.+|..+...++.+...|+++...+.++.. .|..+-++|+.+|..
T Consensus 10 ~~~~~~~~~~~r~~~~---~~~~~~~~~~~~~~r~~~~~~~~l~~~~n~~sk~i~~~~~~~~~~~~l~~~~~~~~~~~~~ 86 (425)
T 2dq3_A 10 KPDYVKERLATRDKEL---VSLVDKVLELDKRRREIIKRLEALRSERNKLSKEIGKLKREGKDTTEIQNRVKELKEEIDR 86 (425)
T ss_dssp CHHHHHHHHTTTCGGG---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTGGGSSCSCTTTSTTHHHHHHHHHHH
T ss_pred CHHHHHHHHHHhCCCc---hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCccHHHHHHHHHHHHHHHHH
Confidence 5566666666664210 000233444555555555555555555555544433 334455555555555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccccCCCCCCc
Q 007579 502 MEQQAQLRDALNEALTAEVRRLKVATQEMASESDPSK 538 (597)
Q Consensus 502 LEqQaqLrdALnEaLkeEVqrLK~a~gEi~~~~~~~~ 538 (597)
| +.....+.++++.+-..++.++.+..+.+
T Consensus 87 ~-------~~~~~~~~~~~~~~~~~ipN~~~~~vp~g 116 (425)
T 2dq3_A 87 L-------EEELRKVEEELKNTLLWIPNLPHPSVPVG 116 (425)
T ss_dssp H-------HHHHHHHHHHHHHHHHTSCCCCCTTSCCC
T ss_pred H-------HHHHHHHHHHHHHHHHhCCCCCCCCCCCC
Confidence 5 44455677888888888998888765543
No 102
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=77.25 E-value=4.1 Score=31.94 Aligned_cols=21 Identities=19% Similarity=0.358 Sum_probs=9.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 007579 479 TLLQRDSVGLTNQNNELKFRL 499 (597)
Q Consensus 479 tlLqre~~~L~aEN~ELK~RL 499 (597)
..|+.++..|..++.+|+.+|
T Consensus 29 ~eLk~k~~~L~~~~~el~~~l 49 (53)
T 2yy0_A 29 AEMKEKYEAIVEENKKLKAKL 49 (53)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 333333344445555555554
No 103
>4ati_A MITF, microphthalmia-associated transcription factor; DNA-binding protein-DNA complex, melanoma; 2.60A {Mus musculus} PDB: 4atk_A
Probab=76.94 E-value=0.87 Score=40.46 Aligned_cols=23 Identities=35% Similarity=0.463 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 007579 485 SVGLTNQNNELKFRLQAMEQQAQ 507 (597)
Q Consensus 485 ~~~L~aEN~ELK~RLqaLEqQaq 507 (597)
...|..+|..|..+|+.||.+++
T Consensus 93 ~~~l~~~n~~L~~riqeLE~~a~ 115 (118)
T 4ati_A 93 QKKLEHANRHLLLRVQELEMQAR 115 (118)
T ss_dssp -----------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 44578889999999999988765
No 104
>4h22_A Leucine-rich repeat flightless-interacting protei; nucleic acid sensor, transcription; 2.89A {Homo sapiens}
Probab=76.58 E-value=15 Score=32.67 Aligned_cols=13 Identities=23% Similarity=0.314 Sum_probs=8.6
Q ss_pred ccChHHHHHHHHh
Q 007579 430 LTDPKRAKRILAN 442 (597)
Q Consensus 430 l~DpKR~KRILaN 442 (597)
.+++|-.|-|+.|
T Consensus 6 EvEEKyrKAMVsn 18 (103)
T 4h22_A 6 EVEEKYKKAMVSN 18 (103)
T ss_dssp --CCTHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 3567888888877
No 105
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=76.57 E-value=18 Score=37.09 Aligned_cols=71 Identities=8% Similarity=0.041 Sum_probs=31.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 007579 455 RYISELEHKVQTLQTEATTLSAQLTLLQRDSVGLTNQNNELKFRLQAMEQQAQLRDALNEALTAEVRRLKVATQ 528 (597)
Q Consensus 455 qYIeELE~KVq~LQtEN~tLsaQLtlLqre~~~L~aEN~ELK~RLqaLEqQaqLrdALnEaLkeEVqrLK~a~g 528 (597)
.+...|++++..++.--..+++|-....+.. ++-...|..+...-+...+-+++....|..+++.++..+.
T Consensus 397 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 467 (471)
T 3mq9_A 397 NVTHLLQQELTEAQKGFQDVEAQAATANHTV---MALMASLDAEKAQGQKKVEELEGEITTLNHKLQDASAEVE 467 (471)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhhhHHHHHHHhhhcchhH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455555555444444444444333332 2223333333332222333334444455566666655443
No 106
>1ik9_A DNA repair protein XRCC4; DNA END joining, double-strand break repair, V(D)J recombination, protein-protein complex, coiled coil; HET: DNA; 2.30A {Homo sapiens} SCOP: b.59.1.1 h.1.11.1 PDB: 3ii6_A* 1fu1_A* 3rwr_A*
Probab=76.49 E-value=28 Score=33.73 Aligned_cols=66 Identities=12% Similarity=0.167 Sum_probs=28.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHH
Q 007579 457 ISELEHKVQTLQTEATTLSAQLTLLQRDSVGLTNQNNELKFRLQAM-EQQAQLRDALNEALTAEVRRLKV 525 (597)
Q Consensus 457 IeELE~KVq~LQtEN~tLsaQLtlLqre~~~L~aEN~ELK~RLqaL-EqQaqLrdALnEaLkeEVqrLK~ 525 (597)
+..|+.++..|+.+.+.|.+++..+-.....+ |..-|..-+.-| |..++||+-....| .|++.+..
T Consensus 141 ~~~L~~e~~~l~~~~~~l~~qlE~~v~~K~~~--E~~L~~KF~~lLNeKK~KIR~lq~~Ll-~~~~~~~~ 207 (213)
T 1ik9_A 141 NEHLQKENERLLRDWNDVQGRFEKAVSAKEAL--ETDLYKRFILVLNEKKTKIRSLHNKLL-NAAQEREK 207 (213)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHhhHHHHHHHHHHHH-HHHHHhhh
Confidence 34444444444444444444444444332222 333334444555 34455555443333 45555443
No 107
>1m1j_C Fibrinogen gamma chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_C
Probab=76.43 E-value=29 Score=36.82 Aligned_cols=27 Identities=11% Similarity=0.140 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcccc
Q 007579 505 QAQLRDALNEALTAEVRRLKVATQEMA 531 (597)
Q Consensus 505 QaqLrdALnEaLkeEVqrLK~a~gEi~ 531 (597)
+.+.+..+.+.+...|+.|+..+.++.
T Consensus 106 ~i~~l~~~~~~~~~~i~~l~~~i~~l~ 132 (409)
T 1m1j_C 106 TIQQLTDMHIMNSNKITQLKQKIAQLE 132 (409)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 333333334444555566665555543
No 108
>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1
Probab=76.36 E-value=31 Score=28.40 Aligned_cols=48 Identities=17% Similarity=0.146 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007579 458 SELEHKVQTLQTEATTLSAQLTLLQRDSVGLTNQNNELKFRLQAMEQQ 505 (597)
Q Consensus 458 eELE~KVq~LQtEN~tLsaQLtlLqre~~~L~aEN~ELK~RLqaLEqQ 505 (597)
..|+............+..++...+.....+..+...|+.+|+.|+.+
T Consensus 9 ~~lk~e~d~a~~~~~~~e~~l~~~e~~~~~~E~ev~~L~kKiq~lE~e 56 (81)
T 1ic2_A 9 QMLKLDKENALDRAEQAEADKKAAEERSKQLEDELVALQKKLKGTEDE 56 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 344444444444455555555555555555555666666666666555
No 109
>2wt7_B Transcription factor MAFB; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 2wty_A* 1k1v_A
Probab=76.26 E-value=4.9 Score=34.82 Aligned_cols=17 Identities=18% Similarity=0.313 Sum_probs=7.6
Q ss_pred HHHHHHHHHHHHHHHHH
Q 007579 486 VGLTNQNNELKFRLQAM 502 (597)
Q Consensus 486 ~~L~aEN~ELK~RLqaL 502 (597)
..|+.++..|..+++.|
T Consensus 51 ~~LE~e~~~L~~e~~~L 67 (90)
T 2wt7_B 51 HHLENEKTQLIQQVEQL 67 (90)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34444444444444444
No 110
>3a7o_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.50A {Saccharomyces cerevisiae}
Probab=76.24 E-value=9 Score=32.32 Aligned_cols=43 Identities=16% Similarity=0.238 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007579 462 HKVQTLQTEATTLSAQLTLLQRDSVGLTNQNNELKFRLQAMEQ 504 (597)
Q Consensus 462 ~KVq~LQtEN~tLsaQLtlLqre~~~L~aEN~ELK~RLqaLEq 504 (597)
.++..|+....-=.+-.+.|.-+...|..||+.|..||+.|++
T Consensus 32 ~eI~~L~e~i~lk~kd~ErLNDEiislNIENNlL~~rl~~l~~ 74 (75)
T 3a7o_A 32 QEIRRLKEVIALKNKNTERLNDELISGTIENNVLQQKLSDLKK 74 (75)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC----
T ss_pred HHHHHHHHHHHHhcccHHHhhHHHHHhHHHHHHHHHHHHHHhc
Confidence 3344444444444445556667778889999999999988754
No 111
>3m0d_C TNF receptor-associated factor 1; trimeric helix coiled coiled, acetylation, alternative splic apoptosis, coiled coil, cytoplasm; 2.80A {Homo sapiens}
Probab=75.93 E-value=28 Score=27.90 Aligned_cols=32 Identities=19% Similarity=0.310 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007579 453 KMRYISELEHKVQTLQTEATTLSAQLTLLQRD 484 (597)
Q Consensus 453 KKqYIeELE~KVq~LQtEN~tLsaQLtlLqre 484 (597)
|-..+.+||.++..++.-...+..++..+...
T Consensus 4 ~~~~~~~le~kl~~lEnIv~~l~~eve~~~~~ 35 (65)
T 3m0d_C 4 KEKLLAELEGKLRVFENIVAVLNKEVEASHLA 35 (65)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 45567888888888877666655555544443
No 112
>3he5_A Synzip1; heterodimeric coiled-coil, de novo protein; 1.75A {Artificial gene}
Probab=75.77 E-value=12 Score=28.81 Aligned_cols=44 Identities=23% Similarity=0.312 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 007579 478 LTLLQRDSVGLTNQNNELKFRLQAMEQQAQLRDALNEALTAEVRRLKVATQ 528 (597)
Q Consensus 478 LtlLqre~~~L~aEN~ELK~RLqaLEqQaqLrdALnEaLkeEVqrLK~a~g 528 (597)
++.|+.+...|..||..||.+- + -+..+...|.+||..||..+.
T Consensus 5 vaqlenevaslenenetlkkkn------l-hkkdliaylekeianlrkkie 48 (49)
T 3he5_A 5 VAQLENEVASLENENETLKKKN------L-HKKDLIAYLEKEIANLRKKIE 48 (49)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH------H-HHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHhhcccHHHHHhc------c-cHHHHHHHHHHHHHHHHHHhc
Confidence 3455666677777777776542 1 122455677788888887654
No 113
>2bni_A General control protein GCN4; four helix bundle, antiparallel four helix bundle acyl transferase; HET: TYZ; 1.5A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 2ccn_A 1w5k_A* 2ccf_A 2cce_A 1w5j_A* 1uo2_A 1gcl_A 1uo1_A 1unv_A 1uo0_A 1unt_A 1uo5_A 1unz_A 1unx_A 1unu_A 1unw_A 1uo4_A 1uo3_A 1uny_A 1u9f_A* ...
Probab=75.59 E-value=3.2 Score=30.54 Aligned_cols=28 Identities=11% Similarity=0.399 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007579 456 YISELEHKVQTLQTEATTLSAQLTLLQR 483 (597)
Q Consensus 456 YIeELE~KVq~LQtEN~tLsaQLtlLqr 483 (597)
.+..||.||+.|-.++..|..+|+.|+.
T Consensus 2 RMnQLEdKvEeLl~~~~~L~~EV~RLk~ 29 (34)
T 2bni_A 2 RMKQIEDKLEEILSKGHHICNELARIKK 29 (34)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHccHHHHHHHHHHHH
Confidence 4678999999999999999888877654
No 114
>2wq1_A General control protein GCN4; TAA, nucleus, coiled coil, DNA-binding, protein export, ION coordination, polar core residues; 1.08A {Saccharomyces cerevisiae} PDB: 2wq0_A 2wq2_A 2wq3_A 2wpz_A 2wpy_A 1ij0_A 1ij1_A 1gcm_A 1rb5_A 1rb6_A 1rb1_A 1rb4_A 1swi_A 3k7z_A 1zii_A 1zij_A 1ij2_A 1ij3_A 1zil_A 1zim_A ...
Probab=75.58 E-value=4.5 Score=29.56 Aligned_cols=27 Identities=11% Similarity=0.220 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007579 457 ISELEHKVQTLQTEATTLSAQLTLLQR 483 (597)
Q Consensus 457 IeELE~KVq~LQtEN~tLsaQLtlLqr 483 (597)
+..||.||+.|-.++..|..+|..|+.
T Consensus 2 MnQLEdKVEell~~~~~le~EV~Rl~~ 28 (33)
T 2wq1_A 2 MKQLEDKIEENTSKIYHNTNEIARNTK 28 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 568999999999999888888876654
No 115
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A
Probab=75.39 E-value=37 Score=30.93 Aligned_cols=10 Identities=50% Similarity=0.657 Sum_probs=4.2
Q ss_pred HHHHHHHHHh
Q 007579 518 AEVRRLKVAT 527 (597)
Q Consensus 518 eEVqrLK~a~ 527 (597)
+||++||...
T Consensus 92 ae~erlr~~~ 101 (121)
T 3mq7_A 92 AEVERLRREN 101 (121)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHhhc
Confidence 3444444433
No 116
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=75.14 E-value=36 Score=37.35 Aligned_cols=77 Identities=18% Similarity=0.236 Sum_probs=41.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHH
Q 007579 448 RSKERKMRYISELEHKVQTLQTEATTLSAQLTLLQRDSVGLTNQNNELKFRLQAMEQQAQLRD---ALNEALTAEVRRLK 524 (597)
Q Consensus 448 RSReRKKqYIeELE~KVq~LQtEN~tLsaQLtlLqre~~~L~aEN~ELK~RLqaLEqQaqLrd---ALnEaLkeEVqrLK 524 (597)
..+++.++.-.-+|.+-+.++.....|.+++..= ....+...++.|..+|+. |...+++ ...+.|.+||+.|+
T Consensus 505 ~l~~~~~~~~~~~~~~~~~~~e~~~ql~~kme~~--~~~~~~e~~~~~~~~~~~--~~~~~~~g~~~~~~~~~~ei~~l~ 580 (592)
T 1f5n_A 505 MLHEMQRKNEQMMEQKERSYQEHLKQLTEKMEND--RVQLLKEQERTLALKLQE--QEQLLKEGFQKESRIMKNEIQDLQ 580 (592)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHH--HHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444445555556666666666644321 122334455556666543 2333333 34678889999999
Q ss_pred HHhc
Q 007579 525 VATQ 528 (597)
Q Consensus 525 ~a~g 528 (597)
....
T Consensus 581 ~~~~ 584 (592)
T 1f5n_A 581 TKMR 584 (592)
T ss_dssp HHC-
T ss_pred Hhhc
Confidence 8743
No 117
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=74.98 E-value=30 Score=35.54 Aligned_cols=11 Identities=9% Similarity=-0.094 Sum_probs=4.1
Q ss_pred HHHHHHHHHHH
Q 007579 514 EALTAEVRRLK 524 (597)
Q Consensus 514 EaLkeEVqrLK 524 (597)
+.++.|++.+.
T Consensus 452 ~~~~~~~~~~~ 462 (487)
T 3oja_A 452 ARLKKLNGEAD 462 (487)
T ss_dssp HHHHHHHHHHH
T ss_pred hhhhhhhhhhh
Confidence 33333333333
No 118
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A
Probab=74.92 E-value=45 Score=29.56 Aligned_cols=48 Identities=21% Similarity=0.285 Sum_probs=25.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Q 007579 483 RDSVGLTNQNNELKFRLQAMEQQAQLRDALNEALTAEVRRLKVATQEM 530 (597)
Q Consensus 483 re~~~L~aEN~ELK~RLqaLEqQaqLrdALnEaLkeEVqrLK~a~gEi 530 (597)
.....|...-.+|..++...+.+..-..+.-..|..+|..|+..+.++
T Consensus 76 ~~k~eLe~~l~el~~rleeeee~~~~L~~~kkkle~e~~~Lk~~led~ 123 (129)
T 2fxo_A 76 KNKIQLEAKVKEMNKRLEDEEEMNAELTAKKRKLEDECSELKRDIDDL 123 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344444444444444444444444444555666777777766554
No 119
>1m1j_B Fibrinogen beta chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_B*
Probab=74.64 E-value=26 Score=37.79 Aligned_cols=24 Identities=17% Similarity=0.295 Sum_probs=13.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcc
Q 007579 506 AQLRDALNEALTAEVRRLKVATQE 529 (597)
Q Consensus 506 aqLrdALnEaLkeEVqrLK~a~gE 529 (597)
..++..+.+.|+..|+.|+..+.+
T Consensus 170 i~~L~~~~~~l~~ki~~l~~~~~~ 193 (464)
T 1m1j_B 170 LRVLRAVIDSLHKKIQKLENAIAT 193 (464)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444555666666666665543
No 120
>2efr_A General control protein GCN4 and tropomyosin 1 Al; destabilizing cluster, hydrophobic core, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2efs_A 2d3e_A
Probab=74.63 E-value=41 Score=31.47 Aligned_cols=14 Identities=50% Similarity=0.506 Sum_probs=8.8
Q ss_pred HHHHHHHHHHHHHH
Q 007579 511 ALNEALTAEVRRLK 524 (597)
Q Consensus 511 ALnEaLkeEVqrLK 524 (597)
+-+..|..||.||+
T Consensus 140 ~~~~~~~~~~~~~~ 153 (155)
T 2efr_A 140 SKNYHLENEVARLK 153 (155)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHhh
Confidence 34555667777776
No 121
>2w83_C C-JUN-amino-terminal kinase-interacting protein 4; golgi apparatus, protein transport, ER-golgi transport, ARF, GTPase, effector, myristate; HET: GTP; 1.93A {Homo sapiens}
Probab=74.52 E-value=23 Score=30.17 Aligned_cols=42 Identities=26% Similarity=0.220 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHH
Q 007579 461 EHKVQTLQTEATTLSAQLTL-------LQRDSVGLTNQNNELKFRLQAM 502 (597)
Q Consensus 461 E~KVq~LQtEN~tLsaQLtl-------Lqre~~~L~aEN~ELK~RLqaL 502 (597)
-++|+.|-.||+.|...-.. |......|+.|+..|+..|.++
T Consensus 8 gkevEnLi~EN~eLl~TKNaLnvvk~DLI~rvdELt~E~e~l~~El~s~ 56 (77)
T 2w83_C 8 GREVENLILENTQLLETKNALNIVKNDLIAKVDELTCEKDVLQGELEAV 56 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 34555666666655544332 2233344444444444444444
No 122
>2hy6_A General control protein GCN4; protein design, parallel heptamer, protein structure, biosyn protein; 1.25A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 2nrn_A 3crp_A 2b1f_A 3crp_B 2ipz_A 3ck4_A 3ck4_B 2b22_A 1ce9_A
Probab=74.50 E-value=3.5 Score=30.30 Aligned_cols=28 Identities=18% Similarity=0.310 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007579 456 YISELEHKVQTLQTEATTLSAQLTLLQR 483 (597)
Q Consensus 456 YIeELE~KVq~LQtEN~tLsaQLtlLqr 483 (597)
.+..||.||+.|-.+|..|..++..|+.
T Consensus 2 RMnQLEdkVEeLl~~~~~Le~eV~RL~~ 29 (34)
T 2hy6_A 2 KVKQLADAVEELASANYHLANAVARLAK 29 (34)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 3568999999999999999888877654
No 123
>2oa5_A Hypothetical protein BQLF2; MHR28B, NESG, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; HET: PE5; 2.10A {Murid herpesvirus 4} SCOP: d.362.1.1 PDB: 2h3r_A*
Probab=74.25 E-value=4.9 Score=36.11 Aligned_cols=24 Identities=25% Similarity=0.365 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 007579 456 YISELEHKVQTLQTEATTLSAQLT 479 (597)
Q Consensus 456 YIeELE~KVq~LQtEN~tLsaQLt 479 (597)
-++||+.+++.|+.||..|+.+|.
T Consensus 9 t~EeLaaeL~kLqmENK~LKkkl~ 32 (110)
T 2oa5_A 9 TYEEMVKEVERLKLENKTLKQKVK 32 (110)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHTC-
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHh
Confidence 378999999999999999999985
No 124
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=74.23 E-value=8.7 Score=30.12 Aligned_cols=28 Identities=14% Similarity=0.281 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007579 477 QLTLLQRDSVGLTNQNNELKFRLQAMEQ 504 (597)
Q Consensus 477 QLtlLqre~~~L~aEN~ELK~RLqaLEq 504 (597)
.+..|+.+...|..+|.+|+.++..|..
T Consensus 23 ~~~~Le~~~~~L~~~n~~L~~~i~~L~~ 50 (61)
T 1t2k_D 23 WVQSLEKKAEDLSSLNGQLQSEVTLLRN 50 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555555666666666666555533
No 125
>2v66_B Nuclear distribution protein NUDE-like 1; structural protein, developmental protein, structural protei phosphorylation, transport, microtubule; 2.10A {Homo sapiens}
Probab=74.16 E-value=49 Score=29.61 Aligned_cols=30 Identities=20% Similarity=0.277 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007579 476 AQLTLLQRDSVGLTNQNNELKFRLQAMEQQ 505 (597)
Q Consensus 476 aQLtlLqre~~~L~aEN~ELK~RLqaLEqQ 505 (597)
..++.|+.+++.|...|..|+.+|-.||+.
T Consensus 35 ~~~~~Lq~El~~lr~~~~~l~~~iReLEq~ 64 (111)
T 2v66_B 35 KQVSVLEDDLSQTRAIKEQLHKYVRELEQA 64 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 345667777777777788777777777665
No 126
>2kz5_A Transcription factor NF-E2 45 kDa subunit; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative; NMR {Homo sapiens}
Probab=74.09 E-value=0.17 Score=44.11 Aligned_cols=43 Identities=21% Similarity=0.296 Sum_probs=29.7
Q ss_pred HHHhhhcchHHHHhhhccChHHHHHHHHhhHHHHHHHHHHHHH
Q 007579 414 AELKKIMANEKLAEIALTDPKRAKRILANRQSAARSKERKMRY 456 (597)
Q Consensus 414 ~E~KKim~~ekLaElAl~DpKR~KRILaNRESAaRSReRKKqY 456 (597)
+|.+..+....|.+.-+..-+.+||..+||.+|++.|+||..-
T Consensus 46 ~efn~ll~~~~Ls~~Ql~lIrdiRRRgKNKvAAqnCRKRKld~ 88 (91)
T 2kz5_A 46 DDFNELLARYPLTESQLALVRDIRRRGKNKVAAQNYRKRKLET 88 (91)
T ss_dssp HHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHHTTSCCCCCCCC
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 3444444444444443444688999999999999999999753
No 127
>3i00_A HIP-I, huntingtin-interacting protein 1; transcription; 2.30A {Homo sapiens} PDB: 2qa7_A
Probab=74.09 E-value=29 Score=31.21 Aligned_cols=68 Identities=22% Similarity=0.251 Sum_probs=36.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007579 455 RYISELEHKVQTLQTEATTLSAQLTLLQRDSVGLTNQNNELKFRLQAMEQQAQLRDALNEALTAEVRRLKV 525 (597)
Q Consensus 455 qYIeELE~KVq~LQtEN~tLsaQLtlLqre~~~L~aEN~ELK~RLqaLEqQaqLrdALnEaLkeEVqrLK~ 525 (597)
.-|+.|-++|..|..+...|..+ .++....|....++|...|..-..+.+-.-..++.|+.|++.|+.
T Consensus 15 ~~Ie~Lkreie~lk~ele~l~~E---~q~~v~ql~~~i~~Le~eL~e~r~~~q~a~~e~e~Lr~e~~~l~~ 82 (120)
T 3i00_A 15 HLIERLYREISGLKAQLENMKTE---SQRVVLQLKGHVSELEADLAEQQHLRQQAADDCEFLRAELDELRR 82 (120)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666777777776666666433 334445555555555555544433333333345555555555543
No 128
>3vmx_A Voltage-gated hydrogen channel 1; coiled-coil, ION channel, ION transport, membrane protein; 1.45A {Mus musculus}
Probab=73.49 E-value=13 Score=29.23 Aligned_cols=36 Identities=14% Similarity=0.204 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007579 461 EHKVQTLQTEATTLSAQLTLLQRDSVGLTNQNNELK 496 (597)
Q Consensus 461 E~KVq~LQtEN~tLsaQLtlLqre~~~L~aEN~ELK 496 (597)
|.++..|..-|..|..+|+.|+..+..++.|+..|+
T Consensus 3 eq~l~kLKe~n~~L~~kv~~Le~~c~~~eQEieRL~ 38 (48)
T 3vmx_A 3 ERQILRLKQINIQLATKIQHLEFSCSEKEQEIERLN 38 (48)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHH
Confidence 566677777777777777777777666666555443
No 129
>3s84_A Apolipoprotein A-IV; four helix bundle, transport protein; 2.40A {Homo sapiens}
Probab=73.30 E-value=41 Score=33.47 Aligned_cols=85 Identities=18% Similarity=0.291 Sum_probs=54.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHH
Q 007579 443 RQSAARSKERKMRYISELEHKVQTLQTEAT-TLSAQLTLLQRDSVGLTNQNNELKFRLQAMEQQ-AQLRDALNEALTAEV 520 (597)
Q Consensus 443 RESAaRSReRKKqYIeELE~KVq~LQtEN~-tLsaQLtlLqre~~~L~aEN~ELK~RLqaLEqQ-aqLrdALnEaLkeEV 520 (597)
...|...+.|=..++++|..++.-.-.+.. .|...+..|+. .|..-+.+|+.+++++.+. .-..+.++.+|..++
T Consensus 164 ~~~a~~L~~~l~~~~eeLr~~L~p~ae~lr~~l~~~~e~l~~---~l~~~~~~~~qq~e~f~~~~~p~~e~~~~~l~~~~ 240 (273)
T 3s84_A 164 KKNAEELKARISASAEELRQRLAPLAEDVRGNLRGNTEGLQK---SLAELGGHLDQQVEEFRRRVEPYGENFNKALVQQM 240 (273)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSSCHHHHHH---HHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---hHHHHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHH
Confidence 455666777777777777777764433221 23333334444 3444457777888888655 344567788998999
Q ss_pred HHHHHHhccc
Q 007579 521 RRLKVATQEM 530 (597)
Q Consensus 521 qrLK~a~gEi 530 (597)
+.|+..++-.
T Consensus 241 e~l~~~l~~~ 250 (273)
T 3s84_A 241 EQLRQKLGPH 250 (273)
T ss_dssp HHHHHHHSCC
T ss_pred HHHHHHhCcc
Confidence 9999998743
No 130
>1wlq_A Geminin; coiled-coil; 2.80A {Mus musculus} PDB: 2zxx_A*
Probab=73.15 E-value=21 Score=30.69 Aligned_cols=31 Identities=16% Similarity=0.203 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007579 467 LQTEATTLSAQLTLLQRDSVGLTNQNNELKF 497 (597)
Q Consensus 467 LQtEN~tLsaQLtlLqre~~~L~aEN~ELK~ 497 (597)
--.||..|..+|..++.+...|..+|.+|+.
T Consensus 36 aL~EN~~Lh~~ie~~~eEi~~Lk~en~~L~e 66 (83)
T 1wlq_A 36 ALKENEKLHKEIEQKDSEIARLRKENKDLAE 66 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3458889999999999999999999987765
No 131
>1uo4_A General control protein GCN4; four helix bundle, cavity, iodobenzene; 1.70A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1uo3_A 1unt_A 1uo5_A 1unu_A 1unv_A 1uo1_A 2ccf_A 2cce_A 1unx_A 1unw_A 1w5j_A* 1w5k_A* 1u9f_A* 3f86_A* 3f87_A* 3hez_A* 3c3f_A*
Probab=72.98 E-value=4 Score=30.01 Aligned_cols=27 Identities=11% Similarity=0.334 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007579 457 ISELEHKVQTLQTEATTLSAQLTLLQR 483 (597)
Q Consensus 457 IeELE~KVq~LQtEN~tLsaQLtlLqr 483 (597)
+..||.||+.|-.+|..|..+|..|+.
T Consensus 3 M~QLEdKVEeLl~~n~~Le~EV~RLk~ 29 (34)
T 1uo4_A 3 MKQIEDKGEEILSKLYHIENELARIKK 29 (34)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 568999999999999998888877654
No 132
>1fmh_A General control protein GCN4; coiled coil, leucine zipper, inter-helical ION pairing, transcription; NMR {Synthetic} SCOP: k.6.1.1 PDB: 1u2u_A
Probab=72.93 E-value=6 Score=28.43 Aligned_cols=28 Identities=21% Similarity=0.436 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007579 457 ISELEHKVQTLQTEATTLSAQLTLLQRD 484 (597)
Q Consensus 457 IeELE~KVq~LQtEN~tLsaQLtlLqre 484 (597)
+..||.+|.+.+.||-.|..+++.|+.+
T Consensus 3 vaqlekevaqaeaenyqleqevaqlehe 30 (33)
T 1fmh_A 3 VAQLEKEVAQAEAENYQLEQEVAQLEHE 30 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHh
Confidence 3567777777777777777777666554
No 133
>2efr_A General control protein GCN4 and tropomyosin 1 Al; destabilizing cluster, hydrophobic core, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2efs_A 2d3e_A
Probab=72.72 E-value=53 Score=30.75 Aligned_cols=36 Identities=17% Similarity=0.222 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007579 488 LTNQNNELKFRLQAMEQQAQLRDALNEALTAEVRRL 523 (597)
Q Consensus 488 L~aEN~ELK~RLqaLEqQaqLrdALnEaLkeEVqrL 523 (597)
+..+.+.|+.+|...+..+...+.-...|..+|.+|
T Consensus 75 yEeqIk~L~~kLKEAE~RAE~AERsv~kLEk~id~l 110 (155)
T 2efr_A 75 YEEEIKVLSDKLKEAETRAEFAERSVTKLEKSIDDL 110 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444333333333344444433
No 134
>2oto_A M protein; helical coiled coil, fibrinogen-binding, virulence factor, S active protein, toxin; 3.04A {Streptococcus pyogenes serotype M1} PDB: 2xny_M
Probab=72.26 E-value=45 Score=30.23 Aligned_cols=44 Identities=16% Similarity=0.257 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007579 460 LEHKVQTLQTEATTLSAQLTLLQRDSVGLTNQNNELKFRLQAME 503 (597)
Q Consensus 460 LE~KVq~LQtEN~tLsaQLtlLqre~~~L~aEN~ELK~RLqaLE 503 (597)
|..+...|..+...+......|+..+..|...|..|+.++..+.
T Consensus 34 Lk~e~e~l~~~~~~~~~~~~eL~~~~~~Le~~n~~L~~~lke~~ 77 (155)
T 2oto_A 34 LKARLENAMEVAGRDFKRAEELEKAKQALEDQRKDLETKLKELQ 77 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333433333333333333444444444444444444444443
No 135
>1ses_A Seryl-tRNA synthetase; ligase; HET: AHX AMP; 2.50A {Thermus thermophilus} SCOP: a.2.7.1 d.104.1.1 PDB: 1ser_A* 1set_A* 1sry_A
Probab=71.80 E-value=16 Score=38.32 Aligned_cols=20 Identities=15% Similarity=0.192 Sum_probs=9.9
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 007579 486 VGLTNQNNELKFRLQAMEQQ 505 (597)
Q Consensus 486 ~~L~aEN~ELK~RLqaLEqQ 505 (597)
..|..+-++|+.+|..|+.+
T Consensus 67 ~~l~~~~~~~~~~~~~~~~~ 86 (421)
T 1ses_A 67 EALIARGKALGEEAKRLEEA 86 (421)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34445555555555555443
No 136
>1nkp_A C-MYC, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1
Probab=71.35 E-value=9.5 Score=32.18 Aligned_cols=21 Identities=29% Similarity=0.373 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 007579 454 MRYISELEHKVQTLQTEATTL 474 (597)
Q Consensus 454 KqYIeELE~KVq~LQtEN~tL 474 (597)
..||..|+.+.+.|+.+...|
T Consensus 51 ~~YI~~L~~~~~~l~~~~~~L 71 (88)
T 1nkp_A 51 TAYILSVQAEEQKLISEEDLL 71 (88)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 467777777666665554433
No 137
>3lss_A Seryl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase, AARS, serrs, translation, ATP-binding, nucleotide-binding, structural genomics; HET: ATP; 1.95A {Trypanosoma brucei} PDB: 3lsq_A*
Probab=71.19 E-value=27 Score=37.65 Aligned_cols=40 Identities=18% Similarity=0.152 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCCCCCc
Q 007579 499 LQAMEQQAQLRDALNEALTAEVRRLKVATQEMASESDPSK 538 (597)
Q Consensus 499 LqaLEqQaqLrdALnEaLkeEVqrLK~a~gEi~~~~~~~~ 538 (597)
...|..+..-.+.....+.+++..+-..++.++.+..+.+
T Consensus 113 ~~~l~~~i~~le~~~~~~~~~~~~~l~~iPN~~~~~vP~g 152 (484)
T 3lss_A 113 SKDLSDQVAGLAKEAQQLEEERDKLMLNVGNILHESVPIA 152 (484)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCCCTTSCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCccCCCC
Confidence 3333333333344455666778888888888887765533
No 138
>2xnx_M M protein, M1-BC1; cell adhesion, virulence factor, streptococcal toxic shock S; 3.30A {Streptococcus pyogenes}
Probab=71.01 E-value=18 Score=33.97 Aligned_cols=53 Identities=17% Similarity=0.282 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Q 007579 478 LTLLQRDSVGLTNQNNELKFRLQAMEQQAQLRDALNEALTAEVRRLKVATQEM 530 (597)
Q Consensus 478 LtlLqre~~~L~aEN~ELK~RLqaLEqQaqLrdALnEaLkeEVqrLK~a~gEi 530 (597)
+..++.++..|.++..+|...++.|+.+.++.++....|+.++...|.+-.++
T Consensus 82 kk~~ea~la~l~~~~~~LeAE~aKLeEekQIseASRqgLrRDLeASReAKKql 134 (146)
T 2xnx_M 82 LGNAKLELDQLSSEKEQLTIEKAKLEEEKQISDASRQSLRRDLDASREAKKQV 134 (146)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHGGGTTTC---------------------
T ss_pred HHhHHHHHHHHHhhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 33444555555666666777777777777777777777777776666665544
No 139
>2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=70.46 E-value=51 Score=28.99 Aligned_cols=47 Identities=9% Similarity=0.143 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007579 456 YISELEHKVQTLQTEATTLSAQLTLLQRDSVGLTNQNNELKFRLQAM 502 (597)
Q Consensus 456 YIeELE~KVq~LQtEN~tLsaQLtlLqre~~~L~aEN~ELK~RLqaL 502 (597)
.|..|+.++.....+...|..++..-+........++..|...|+.|
T Consensus 13 ~l~~le~~~~~~~~e~~~L~~~l~eE~~~R~~aE~~~~~ie~ElEeL 59 (97)
T 2eqb_B 13 DYNTLKRELSDRDDEVKRLREDIAKENELRTKAEEEADKLNKEVEDL 59 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555566666666666666666655555555555666565555555
No 140
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=70.03 E-value=12 Score=31.46 Aligned_cols=34 Identities=15% Similarity=0.236 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007579 492 NNELKFRLQAMEQQAQLRDALNEALTAEVRRLKV 525 (597)
Q Consensus 492 N~ELK~RLqaLEqQaqLrdALnEaLkeEVqrLK~ 525 (597)
.+....+|..|+.++.-++.++..|+.|+..++.
T Consensus 35 Lr~kd~~I~eLEk~L~ekd~eI~~LqseLDKfrS 68 (72)
T 3nmd_A 35 LRQRDALIDELELELDQKDELIQMLQNELDKYRS 68 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 3334445556666666666666666666666654
No 141
>2lw1_A ABC transporter ATP-binding protein UUP; ABC REG subfamily, DNA binding protein; NMR {Escherichia coli}
Probab=69.71 E-value=29 Score=28.92 Aligned_cols=49 Identities=12% Similarity=0.152 Sum_probs=32.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH---H---HHHHHHHHHHHHHHHHHHHHH
Q 007579 455 RYISELEHKVQTLQTEATTLSAQLTLL---Q---RDSVGLTNQNNELKFRLQAME 503 (597)
Q Consensus 455 qYIeELE~KVq~LQtEN~tLsaQLtlL---q---re~~~L~aEN~ELK~RLqaLE 503 (597)
+-++.||.++..|+.+...|..++..- . .....|..+..++...|..+.
T Consensus 22 rEle~le~~Ie~LE~~i~~le~~ladp~~y~~d~~~~~~l~~~l~~~e~eLe~~~ 76 (89)
T 2lw1_A 22 RELEQLPQLLEDLEAKLEALQTQVADASFFSQPHEQTQKVLADMAAAEQELEQAF 76 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHSTTGGGSCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCcccccCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 347889999999999999999888642 1 234445555555555555443
No 142
>2wvr_A Geminin; DNA replication license, DNA replication inhibitor, phosphoprotein, UBL conjugation, DNA-binding, polymorphism; HET: DNA; 3.30A {Homo sapiens}
Probab=69.68 E-value=19 Score=35.37 Aligned_cols=33 Identities=18% Similarity=0.205 Sum_probs=27.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007579 468 QTEATTLSAQLTLLQRDSVGLTNQNNELKFRLQ 500 (597)
Q Consensus 468 QtEN~tLsaQLtlLqre~~~L~aEN~ELK~RLq 500 (597)
-.||..|..+|..|+.+...|..||.+|+.-++
T Consensus 114 LeEN~~Lh~~ie~l~eEi~~LkeEn~eLkeLae 146 (209)
T 2wvr_A 114 LKENEKLHKEIEQKDNEIARLKKENKELAEVAE 146 (209)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 358889999999999999999999988876443
No 143
>3a2a_A Voltage-gated hydrogen channel 1; voltage-gated proton channel, alternative splicing, coiled C transport, ionic channel, membrane, transmembrane; 2.00A {Homo sapiens}
Probab=69.65 E-value=11 Score=30.44 Aligned_cols=35 Identities=17% Similarity=0.219 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007579 461 EHKVQTLQTEATTLSAQLTLLQRDSVGLTNQNNEL 495 (597)
Q Consensus 461 E~KVq~LQtEN~tLsaQLtlLqre~~~L~aEN~EL 495 (597)
|+++..|...|-.|..+|..|+..+.....|+..|
T Consensus 10 e~q~~kLKq~n~~L~~kv~~Le~~c~e~eQEieRL 44 (58)
T 3a2a_A 10 ERQLLRLKQMNVQLAAKIQHLEFSCSEKEQEIERL 44 (58)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566666666666666666666655555555433
No 144
>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1
Probab=69.26 E-value=46 Score=27.33 Aligned_cols=47 Identities=15% Similarity=0.227 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007579 454 MRYISELEHKVQTLQTEATTLSAQLTLLQRDSVGLTNQNNELKFRLQ 500 (597)
Q Consensus 454 KqYIeELE~KVq~LQtEN~tLsaQLtlLqre~~~L~aEN~ELK~RLq 500 (597)
...++.++.+++..+..+..+...|..|++.+..|..+-..+..+|.
T Consensus 19 ~~~~~~~e~~l~~~e~~~~~~E~ev~~L~kKiq~lE~eld~~ee~l~ 65 (81)
T 1ic2_A 19 LDRAEQAEADKKAAEERSKQLEDELVALQKKLKGTEDELDKYSESLK 65 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444455555555444444444444444444444444444444443
No 145
>2xdj_A Uncharacterized protein YBGF; unknown function; 1.82A {Escherichia coli} PDB: 2wz7_A
Probab=68.94 E-value=50 Score=27.96 Aligned_cols=43 Identities=12% Similarity=0.280 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007579 457 ISELEHKVQTLQTEATTLSAQLTLLQRDSVGLTNQNNELKFRL 499 (597)
Q Consensus 457 IeELE~KVq~LQtEN~tLsaQLtlLqre~~~L~aEN~ELK~RL 499 (597)
+.+|-.++..|+.|+..|+.+++.+..+...|....+++-..|
T Consensus 22 ~~~Lq~Ql~~Lq~Ev~~LRGqiE~~~~~l~ql~~rQrd~Y~dL 64 (83)
T 2xdj_A 22 LTQLQQQLSDNQSDIDSLRGQIQENQYQLNQVVERQKQILLQI 64 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567777777777777777777776666655555555444433
No 146
>3m9b_A Proteasome-associated ATPase; coil COIL with 5 beta-strand barrel inter domain, chaperone; 3.94A {Mycobacterium tuberculosis} PDB: 3m9d_A
Probab=68.79 E-value=6.3 Score=39.60 Aligned_cols=27 Identities=19% Similarity=0.362 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007579 458 SELEHKVQTLQTEATTLSAQLTLLQRD 484 (597)
Q Consensus 458 eELE~KVq~LQtEN~tLsaQLtlLqre 484 (597)
.+|+.++..|+..|..|...+..++++
T Consensus 57 ~eL~~ql~~L~arNe~L~~~Lk~ar~E 83 (251)
T 3m9b_A 57 HQLEARIDSLAARNSKLMETLKEARQQ 83 (251)
T ss_dssp HHHHHHHHHHTTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555544444444444444433
No 147
>3trt_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural protein; 2.30A {Homo sapiens} PDB: 3klt_A*
Probab=68.64 E-value=24 Score=28.36 Aligned_cols=14 Identities=14% Similarity=0.404 Sum_probs=6.0
Q ss_pred HHHHHHHHHHHHHH
Q 007579 489 TNQNNELKFRLQAM 502 (597)
Q Consensus 489 ~aEN~ELK~RLqaL 502 (597)
..|..+|+..|+.|
T Consensus 55 k~Ei~elrr~iq~L 68 (77)
T 3trt_A 55 KQESTEYRRQVQSL 68 (77)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 33444444444444
No 148
>1am9_A Srebp-1A, protein (sterol regulatory element binding protein 1A); basic-helix-loop- helix-leucine zipper, transcription factor; HET: DNA; 2.30A {Homo sapiens} SCOP: a.38.1.1 PDB: 1ukl_C
Probab=68.52 E-value=6.9 Score=32.45 Aligned_cols=25 Identities=32% Similarity=0.498 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 007579 454 MRYISELEHKVQTLQTEATTLSAQL 478 (597)
Q Consensus 454 KqYIeELE~KVq~LQtEN~tLsaQL 478 (597)
..||..|+.+++.|+.|+..|..++
T Consensus 49 i~YI~~Lq~~~~~L~~e~~~L~~~~ 73 (82)
T 1am9_A 49 IDYIRFLQHSNQKLKQENLSLRTAV 73 (82)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555555555555555554444
No 149
>3q0x_A Centriole protein; centrosome protein, coiled coil mediated dimer, structural P; 3.02A {Chlamydomonas reinhardtii}
Probab=68.36 E-value=21 Score=35.27 Aligned_cols=58 Identities=19% Similarity=0.240 Sum_probs=44.9
Q ss_pred ccChHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007579 430 LTDPKRAKRILANRQSAARSKERKMRYISELEHKVQTLQTEATTLSAQLTLLQRDSVGLTNQNN 493 (597)
Q Consensus 430 l~DpKR~KRILaNRESAaRSReRKKqYIeELE~KVq~LQtEN~tLsaQLtlLqre~~~L~aEN~ 493 (597)
..+...+|+-|+.|-.+-++ .+..|+.+++..+.|++++.++++..+++.+.+...-.
T Consensus 159 ~asde~Ik~yLa~R~~~lK~------kl~~l~~~L~~~~~e~~s~~~~~~~~~~~~~~~~~~~~ 216 (228)
T 3q0x_A 159 PGNDSVVKQFLAFRLSEVKG------TCHDLSDDLSRTRDDRDSMVAQLAQCRQQLAQLREQYD 216 (228)
T ss_dssp ECCHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 35678899999988887664 45788999999999999999998887776655544433
No 150
>2ocy_A RAB guanine nucleotide exchange factor SEC2; RAB, GEF, guanine exchange factor, coiled-coil, endocytosis/exocytosis complex; 3.30A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=67.73 E-value=55 Score=30.71 Aligned_cols=48 Identities=8% Similarity=0.140 Sum_probs=33.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007579 456 YISELEHKVQTLQTEATTLSAQLTLLQRDSVGLTNQNNELKFRLQAME 503 (597)
Q Consensus 456 YIeELE~KVq~LQtEN~tLsaQLtlLqre~~~L~aEN~ELK~RLqaLE 503 (597)
.+..|+.++.....|...|..++..-+........++..+...|+.|.
T Consensus 45 ~~~~l~~~~~~~~~e~~~L~~~l~~E~~~R~~aE~~~~~ie~ElEeLT 92 (154)
T 2ocy_A 45 DYNTLKRELSDRDDEVKRLREDIAKENELRTKAEEEADKLNKEVEDLT 92 (154)
T ss_dssp HHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455567777777778888877777766666666667777777776663
No 151
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=67.37 E-value=9.1 Score=30.01 Aligned_cols=27 Identities=11% Similarity=0.249 Sum_probs=11.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007579 464 VQTLQTEATTLSAQLTLLQRDSVGLTN 490 (597)
Q Consensus 464 Vq~LQtEN~tLsaQLtlLqre~~~L~a 490 (597)
|..|+.||..|++++..|..++..|..
T Consensus 21 ~eaLk~E~~eLk~k~~~L~~~~~el~~ 47 (53)
T 2yy0_A 21 IELLRLELAEMKEKYEAIVEENKKLKA 47 (53)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444444433
No 152
>3lss_A Seryl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase, AARS, serrs, translation, ATP-binding, nucleotide-binding, structural genomics; HET: ATP; 1.95A {Trypanosoma brucei} PDB: 3lsq_A*
Probab=67.36 E-value=23 Score=38.19 Aligned_cols=10 Identities=10% Similarity=0.318 Sum_probs=3.8
Q ss_pred HHHHHHHHHH
Q 007579 493 NELKFRLQAM 502 (597)
Q Consensus 493 ~ELK~RLqaL 502 (597)
++|+.+|..|
T Consensus 114 ~~l~~~i~~l 123 (484)
T 3lss_A 114 KDLSDQVAGL 123 (484)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 3333333333
No 153
>1m1j_A Fibrinogen alpha subunit; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: h.1.8.1 PDB: 1ei3_A
Probab=67.28 E-value=1.2e+02 Score=33.05 Aligned_cols=25 Identities=16% Similarity=0.223 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhc
Q 007579 504 QQAQLRDALNEALTAEVRRLKVATQ 528 (597)
Q Consensus 504 qQaqLrdALnEaLkeEVqrLK~a~g 528 (597)
+.++++....+.+..+|+||.+++.
T Consensus 132 ~~IrvLq~~l~~q~skIQRLE~dI~ 156 (491)
T 1m1j_A 132 NRIKALQNSIQEQVVEMKRLEVDID 156 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444445555555555553
No 154
>3efg_A Protein SLYX homolog; xanthomonas campestris PV. campestris, coiled-coil, structur genomics, PSI-2, protein structure initiative; 2.00A {Xanthomonas campestris PV}
Probab=67.13 E-value=14 Score=30.83 Aligned_cols=45 Identities=18% Similarity=0.131 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007579 458 SELEHKVQTLQTEATTLSAQLTLLQRDSVGLTNQNNELKFRLQAM 502 (597)
Q Consensus 458 eELE~KVq~LQtEN~tLsaQLtlLqre~~~L~aEN~ELK~RLqaL 502 (597)
.+||.++..|+...+-+...|..|.........+...|+.+|..|
T Consensus 10 ~~le~Ri~~LE~klAfqE~tIeeLn~~v~~Qq~~Id~L~~ql~~L 54 (78)
T 3efg_A 10 QELEARLVELETRLSFQEQALTELSEALADARLTGARNAELIRHL 54 (78)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356666666666666666655555544444333433334333333
No 155
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=66.59 E-value=18 Score=37.75 Aligned_cols=48 Identities=17% Similarity=0.194 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007579 455 RYISELEHKVQTLQTEATTLSAQLTLLQRDSVGLTNQNNELKFRLQAM 502 (597)
Q Consensus 455 qYIeELE~KVq~LQtEN~tLsaQLtlLqre~~~L~aEN~ELK~RLqaL 502 (597)
+.+.+|+.++..|+.++..|..++..+++++.....+.+.|--+|+.|
T Consensus 10 ~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~rr~l~n~~~el 57 (403)
T 4etp_A 10 EKIAALKEKIAALKEKIKDTELGMKELNEILIKEETVRRTLHNELQEL 57 (403)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 344455555555555555555555555544444444444444444433
No 156
>4emc_A Monopolin complex subunit CSM1; RWD domain, kinetochore-binding, kinetoch replication-replication complex; 3.05A {Saccharomyces cerevisiae} PDB: 3n7n_A 3n4x_A
Probab=66.27 E-value=42 Score=32.66 Aligned_cols=61 Identities=21% Similarity=0.254 Sum_probs=38.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007579 456 YISELEHKVQTLQTEATTLSAQLTLLQRDSVGLTNQNNELKFRLQAMEQQAQLRDALNEAL 516 (597)
Q Consensus 456 YIeELE~KVq~LQtEN~tLsaQLtlLqre~~~L~aEN~ELK~RLqaLEqQaqLrdALnEaL 516 (597)
-|..|..++..|..++.....+++.|+++...|..+-+.++.++..-.....+..-+.+.|
T Consensus 21 LV~~L~~En~~L~~ql~~k~~ei~~L~~ql~sl~~~~~~~~~~~~~~~e~i~i~~DL~e~L 81 (190)
T 4emc_A 21 LVANLVNENFVLSEKLDTKATEIKQLQKQIDSLNAQVKELKTQTSQQAENSEVIKDLYEYL 81 (190)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHhhhHHHHHHHHc
Confidence 4566777777777777777777777777777776666666666654444444444444443
No 157
>2xdj_A Uncharacterized protein YBGF; unknown function; 1.82A {Escherichia coli} PDB: 2wz7_A
Probab=66.26 E-value=38 Score=28.70 Aligned_cols=32 Identities=31% Similarity=0.304 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007579 471 ATTLSAQLTLLQRDSVGLTNQNNELKFRLQAM 502 (597)
Q Consensus 471 N~tLsaQLtlLqre~~~L~aEN~ELK~RLqaL 502 (597)
...|..+|..|+.+...|.-++.++.-+|..|
T Consensus 22 ~~~Lq~Ql~~Lq~Ev~~LRGqiE~~~~~l~ql 53 (83)
T 2xdj_A 22 LTQLQQQLSDNQSDIDSLRGQIQENQYQLNQV 53 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 34455555555555555555555555555544
No 158
>3s4r_A Vimentin; alpha-helix, cytoskeleton, intermediate filament, structural; 2.45A {Homo sapiens} PDB: 3ssu_A
Probab=65.59 E-value=30 Score=29.58 Aligned_cols=43 Identities=23% Similarity=0.281 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 007579 484 DSVGLTNQNNELKFRLQAMEQQAQLRDALNEALTAEVRRLKVATQ 528 (597)
Q Consensus 484 e~~~L~aEN~ELK~RLqaLEqQaqLrdALnEaLkeEVqrLK~a~g 528 (597)
....|+.+|..|..++..+.++.. ..+......||..||..+.
T Consensus 24 KVR~LEqqN~~Le~~i~~l~~~~~--~~~~~~ye~~i~~Lr~~i~ 66 (93)
T 3s4r_A 24 KVRFLEQQNKILLAELEQLKGQGK--SRLGDLYEEEMRELRRQVD 66 (93)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhccC--CCcHHHHHHHHHHHHHHHH
Confidence 334444455555555544433321 2233334445555554443
No 159
>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A
Probab=65.51 E-value=6.9 Score=30.88 Aligned_cols=28 Identities=21% Similarity=0.294 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007579 477 QLTLLQRDSVGLTNQNNELKFRLQAMEQ 504 (597)
Q Consensus 477 QLtlLqre~~~L~aEN~ELK~RLqaLEq 504 (597)
.+..|+.....|..+|.+|+.++..|..
T Consensus 23 ~~~~Le~~v~~L~~~n~~L~~~v~~L~~ 50 (62)
T 1jnm_A 23 RIARLEEKVKTLKAQNSELASTANMLRE 50 (62)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555566666666665555533
No 160
>1t6f_A Geminin; coiled-coil, cell cycle; 1.47A {Synthetic} SCOP: h.1.28.1
Probab=65.49 E-value=11 Score=28.21 Aligned_cols=28 Identities=21% Similarity=0.324 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007579 469 TEATTLSAQLTLLQRDSVGLTNQNNELK 496 (597)
Q Consensus 469 tEN~tLsaQLtlLqre~~~L~aEN~ELK 496 (597)
.||..|...|+.-+.+...|..||.+|+
T Consensus 7 ~ENekLhk~ie~KdeeIa~Lk~eN~eL~ 34 (37)
T 1t6f_A 7 KENEKLHKEIEQKDNEIARLKKENKELA 34 (37)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHH
Confidence 5888999999999999999999998886
No 161
>1jcd_A Major outer membrane lipoprotein; protein folding, coiled coil, helix capping, alanine-zipper, membrane protein; 1.30A {Escherichia coli} SCOP: h.1.16.1 PDB: 1eq7_A 1t8z_A* 2guv_A 2gus_A 1jcc_A 1kfn_A 1kfm_A
Probab=65.48 E-value=32 Score=27.11 Aligned_cols=27 Identities=15% Similarity=0.120 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007579 457 ISELEHKVQTLQTEATTLSAQLTLLQR 483 (597)
Q Consensus 457 IeELE~KVq~LQtEN~tLsaQLtlLqr 483 (597)
|.+|..+|+.|..+...|+..+..|+.
T Consensus 6 i~~Lss~V~~L~~kVdqLssdV~al~~ 32 (52)
T 1jcd_A 6 ADQASSDAQTANAKADQASNDANAARS 32 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555555555555444444444433
No 162
>2ke4_A CDC42-interacting protein 4; CIP4, TC10, coiled-coil, alternative splicing, cell membrane, coiled coil, cytoplasm, cytoskeleton, endocytosis; NMR {Homo sapiens}
Probab=64.55 E-value=27 Score=30.34 Aligned_cols=28 Identities=11% Similarity=0.147 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007579 455 RYISELEHKVQTLQTEATTLSAQLTLLQ 482 (597)
Q Consensus 455 qYIeELE~KVq~LQtEN~tLsaQLtlLq 482 (597)
+.|.+|+.+++.....-.-|...+..+.
T Consensus 22 ~Ki~el~~ei~ke~~~regl~Km~~vY~ 49 (98)
T 2ke4_A 22 QQLEERSRELQKEVDQREALKKMKDVYE 49 (98)
T ss_dssp HHHHHHHHHHHHHHHHHTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555555555555444444444433
No 163
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=64.12 E-value=52 Score=26.00 Aligned_cols=29 Identities=14% Similarity=0.242 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007579 477 QLTLLQRDSVGLTNQNNELKFRLQAMEQQ 505 (597)
Q Consensus 477 QLtlLqre~~~L~aEN~ELK~RLqaLEqQ 505 (597)
.+..|+.+...|..+|..|+.+|..|..+
T Consensus 24 ~~~~Le~~v~~L~~~n~~L~~ei~~L~~e 52 (63)
T 2wt7_A 24 LTDTLQAETDQLEDEKSALQTEIANLLKE 52 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35666667777777777777777666444
No 164
>2c9l_Y EB1, zebra, BZLF1 trans-activator protein; viral protein, epstein-BARR virus, EBV; 2.25A {Human herpesvirus 4} SCOP: h.1.3.1 PDB: 2c9n_Y
Probab=63.58 E-value=32 Score=27.86 Aligned_cols=23 Identities=17% Similarity=0.303 Sum_probs=17.7
Q ss_pred HHhhHHHHHHHHHHHHHHHHHHH
Q 007579 440 LANRQSAARSKERKMRYISELEH 462 (597)
Q Consensus 440 LaNRESAaRSReRKKqYIeELE~ 462 (597)
-+||.+++++|.|=+..++-...
T Consensus 7 yknr~asrk~rakfkn~lqh~r~ 29 (63)
T 2c9l_Y 7 YKNRVAARKSRAKFKQLLQHYRE 29 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 48999999999988776554433
No 165
>2oxj_A Hybrid alpha/beta peptide based on the GCN4-P1 Se heptad positions B and F substituted...; helix bundle, foldamer, unknown function; HET: B3K B3D B3E B3S B3Y B3X B3A BAL; 2.00A {Synthetic} PDB: 2oxk_A*
Probab=63.58 E-value=10 Score=27.93 Aligned_cols=16 Identities=44% Similarity=0.510 Sum_probs=9.9
Q ss_pred HHHHHHHHHHHHHHhc
Q 007579 513 NEALTAEVRRLKVATQ 528 (597)
Q Consensus 513 nEaLkeEVqrLK~a~g 528 (597)
++.|..||.|||..++
T Consensus 17 n~~Le~eV~rLk~ll~ 32 (34)
T 2oxj_A 17 NXHLEXEVXRLKXLVX 32 (34)
T ss_dssp HHHHHHHHHHHHHHHS
T ss_pred hhhHHHHHHHHHHHHh
Confidence 4455567777776654
No 166
>3s9g_A Protein hexim1; cyclin T-binding domain (TBD), cyclin T1/P-TEFB/7SK snRNA, N transcription; 2.10A {Homo sapiens} PDB: 2gd7_A
Probab=63.41 E-value=75 Score=28.30 Aligned_cols=52 Identities=23% Similarity=0.279 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007579 467 LQTEATTLSAQLTLLQRDSVGLTNQNNELKFRLQAMEQQAQLRDALNEALTAEVRRLKV 525 (597)
Q Consensus 467 LQtEN~tLsaQLtlLqre~~~L~aEN~ELK~RLqaLEqQaqLrdALnEaLkeEVqrLK~ 525 (597)
|-.|.-.|...+..++.++..|.......-.++.+|+.. .+.|+.|-++|+.
T Consensus 35 LIqEYl~LE~~~s~le~e~~rlr~~~~~~~~~v~eLe~e-------verL~~ENq~L~~ 86 (104)
T 3s9g_A 35 LIKEYLELEKSLSRMEDENNRLRLESKRLDARVRELELE-------LDRLRAENLQLLT 86 (104)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHH-------HHHHHHHHHHHHH
Confidence 444444555555555555555555555554455555444 4444445555444
No 167
>3uux_B Mitochondrial division protein 1; tetratricopeptide repeat, mitochondrial fission, mitochondri cytoplasm, apoptosis; 3.90A {Saccharomyces cerevisiae S288C}
Probab=63.22 E-value=77 Score=31.82 Aligned_cols=46 Identities=17% Similarity=0.359 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007579 457 ISELEHKVQTLQTEATTLSAQLTLLQRDSVGLTNQNNELKFRLQAM 502 (597)
Q Consensus 457 IeELE~KVq~LQtEN~tLsaQLtlLqre~~~L~aEN~ELK~RLqaL 502 (597)
|.|+..|++.|+..-..+..+|+.|+++=..|..+...++.||..+
T Consensus 179 I~EID~KI~~L~~mR~~vl~RLA~lEqdEl~LE~eL~~V~~Rief~ 224 (242)
T 3uux_B 179 IRDIEVEVENLRQKKEKLLGKIANIEQNQLLLEDNLKQIDDRLDFL 224 (242)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444444444444444444444444433
No 168
>2j5u_A MREC protein; bacterial cell shape determining protein MREC, cell shape regulation; 2.5A {Listeria monocytogenes}
Probab=63.22 E-value=3.9 Score=40.19 Aligned_cols=41 Identities=24% Similarity=0.195 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 007579 485 SVGLTNQNNELKFRLQAMEQQAQLRDALNEALTAEVRRLKVATQE 529 (597)
Q Consensus 485 ~~~L~aEN~ELK~RLqaLEqQaqLrdALnEaLkeEVqrLK~a~gE 529 (597)
+..|..||.+||.++..|+.+.. ..+.|++|.++||..++-
T Consensus 21 ~~~l~~eN~~Lk~e~~~l~~~~~----~~~~l~~En~rLr~lL~~ 61 (255)
T 2j5u_A 21 LKNTYTENQHLKERLEELAQLES----EVADLKKENKDLKESLDI 61 (255)
T ss_dssp -----CTTTTHHHHHHHHHHHHH----HHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHhcC
Confidence 34456677777777766655433 345666788888888764
No 169
>1zme_C Proline utilization transcription activator; complex (transcription regulation/DNA), PUT3, Zn2Cys6, binuclear cluster; HET: DNA 5IU; 2.50A {Saccharomyces cerevisiae} SCOP: g.38.1.1 h.1.3.1 PDB: 1ajy_A
Probab=62.82 E-value=6.2 Score=30.43 Aligned_cols=25 Identities=24% Similarity=0.457 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 007579 454 MRYISELEHKVQTLQTEATTLSAQL 478 (597)
Q Consensus 454 KqYIeELE~KVq~LQtEN~tLsaQL 478 (597)
..|+++||.++..|+.....|...|
T Consensus 43 ~~~~~~L~~ri~~Le~~l~~l~~~l 67 (70)
T 1zme_C 43 TKYLQQLQKDLNDKTEENNRLKALL 67 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4589999999999988888777654
No 170
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Probab=62.78 E-value=69 Score=26.95 Aligned_cols=6 Identities=17% Similarity=0.573 Sum_probs=2.1
Q ss_pred HHHHHH
Q 007579 459 ELEHKV 464 (597)
Q Consensus 459 ELE~KV 464 (597)
+|+..+
T Consensus 35 ~l~~~l 40 (112)
T 1l8d_A 35 DLKTAI 40 (112)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 333333
No 171
>3ol1_A Vimentin; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, structural protein; 2.81A {Homo sapiens} PDB: 3uf1_A
Probab=62.44 E-value=82 Score=27.72 Aligned_cols=43 Identities=14% Similarity=0.037 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 007579 485 SVGLTNQNNELKFRLQAMEQQAQLRDALNEALTAEVRRLKVAT 527 (597)
Q Consensus 485 ~~~L~aEN~ELK~RLqaLEqQaqLrdALnEaLkeEVqrLK~a~ 527 (597)
...+..+...||..+....-...-.+...+.|++|+.-||..-
T Consensus 64 r~~~E~di~~lrK~lD~~~l~r~dLE~~iesL~eEl~FLKk~h 106 (119)
T 3ol1_A 64 REEAENTLQSFRQDVDNASLARLDLERKVESLQEEIAFLKKLH 106 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhcccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455555555554443333334455677777777776543
No 172
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=62.35 E-value=32 Score=36.57 Aligned_cols=66 Identities=12% Similarity=0.214 Sum_probs=43.4
Q ss_pred HHHHHHHHhhHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007579 434 KRAKRILANRQSAARSKE-RKMRYISELEHKVQTLQTEATTLSAQLTLLQRDSVGLTNQNNELKFRL 499 (597)
Q Consensus 434 KR~KRILaNRESAaRSRe-RKKqYIeELE~KVq~LQtEN~tLsaQLtlLqre~~~L~aEN~ELK~RL 499 (597)
+-.+.+|+.|+.-+.--+ +=.+|.++||+++..|+..+..-...|..|+..+..+..+.+.|...|
T Consensus 91 ~~~~~~lk~~~~q~~dndn~~~e~s~eLe~~i~~lk~~V~~q~~~ir~Lq~~l~~q~~kiqRLE~~I 157 (390)
T 1deq_A 91 KNIVELMRGDFAKANNNDNTFKQINEDLRSRIEILRRKVIEQVQRINLLQKNVRDQLVDMKRLEVDI 157 (390)
T ss_pred HHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334445555554333333 335788999999999988777766688887777666666666665555
No 173
>2dq3_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, nationa on protein structural and functional analyses; HET: SSA; 3.00A {Aquifex aeolicus}
Probab=61.88 E-value=9.4 Score=39.99 Aligned_cols=53 Identities=13% Similarity=0.119 Sum_probs=28.2
Q ss_pred HhhHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007579 441 ANRQSAARSKERKMRYI-SELEHKVQTLQTEATTLSAQLTLLQRDSVGLTNQNNE 494 (597)
Q Consensus 441 aNRESAaRSReRKKqYI-eELE~KVq~LQtEN~tLsaQLtlLqre~~~L~aEN~E 494 (597)
.|.+..+++-.||. +- .++-.++-.|..+-..|..++..|+.+...+..+-..
T Consensus 9 ~~~~~~~~~~~~r~-~~~~~~~~~~~~~~~~~r~~~~~~~~l~~~~n~~sk~i~~ 62 (425)
T 2dq3_A 9 EKPDYVKERLATRD-KELVSLVDKVLELDKRRREIIKRLEALRSERNKLSKEIGK 62 (425)
T ss_dssp HCHHHHHHHHTTTC-GGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTG
T ss_pred hCHHHHHHHHHHhC-CCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46665555544442 21 2334556666666666666666665555555554443
No 174
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=61.78 E-value=29 Score=29.15 Aligned_cols=29 Identities=21% Similarity=0.218 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007579 453 KMRYISELEHKVQTLQTEATTLSAQLTLL 481 (597)
Q Consensus 453 KKqYIeELE~KVq~LQtEN~tLsaQLtlL 481 (597)
|...|.+||.+++....++..|..++..+
T Consensus 38 kd~~I~eLEk~L~ekd~eI~~LqseLDKf 66 (72)
T 3nmd_A 38 RDALIDELELELDQKDELIQMLQNELDKY 66 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33446666666666666666666655443
No 175
>3jsv_C NF-kappa-B essential modulator; ubiquitin, coiled-coil, cellular signaling, cytoplasm, isopeptide bond, nucleus, phosphoprotein, UBL conjugation; 2.70A {Mus musculus} PDB: 3f89_A 2zvo_B 2zvn_B
Probab=61.67 E-value=70 Score=28.05 Aligned_cols=39 Identities=15% Similarity=0.084 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 007579 490 NQNNELKFRLQAMEQQAQLRDALNEALTAEVRRLKVATQ 528 (597)
Q Consensus 490 aEN~ELK~RLqaLEqQaqLrdALnEaLkeEVqrLK~a~g 528 (597)
.....|+.++.........-.+-.|.+..|.+.|...+.
T Consensus 40 E~i~vLk~Qv~IY~~DF~aERadREkl~~eKe~L~~ql~ 78 (94)
T 3jsv_C 40 ETVPVLKAQADIYKADFQAERHAREKLVEKKEYLQEQLE 78 (94)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 445555555555544444444445555555555554443
No 176
>1joc_A EEA1, early endosomal autoantigen 1; FYVE domain, inositol 3-phosphate binding, membrane protein; HET: ITP; 2.20A {Homo sapiens} SCOP: g.50.1.1 h.1.21.1 PDB: 1hyi_A* 1hyj_A
Probab=61.53 E-value=42 Score=29.69 Aligned_cols=24 Identities=25% Similarity=0.236 Sum_probs=11.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 007579 458 SELEHKVQTLQTEATTLSAQLTLL 481 (597)
Q Consensus 458 eELE~KVq~LQtEN~tLsaQLtlL 481 (597)
...|.+|..|+.++.+|+.++...
T Consensus 14 ~~~e~e~~~l~~~~~el~~~l~~~ 37 (125)
T 1joc_A 14 LKGEGEIEKLQTKVLELQRKLDNT 37 (125)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHH
Confidence 334444555555555555544433
No 177
>1dip_A Delta-sleep-inducing peptide immunoreactive peptide; structure, leucine zipper, PIG, acetylation; NMR {Sus scrofa} SCOP: h.1.12.1
Probab=61.41 E-value=7.8 Score=32.91 Aligned_cols=28 Identities=25% Similarity=0.222 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007579 471 ATTLSAQLTLLQRDSVGLTNQNNELKFR 498 (597)
Q Consensus 471 N~tLsaQLtlLqre~~~L~aEN~ELK~R 498 (597)
...|+.+|.+|..++..|+.||+-||.-
T Consensus 17 VevLKe~I~EL~e~~~qLE~EN~~Lk~~ 44 (78)
T 1dip_A 17 VEILKEQIRELVEKNSQLERENTLLKTL 44 (78)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3456666666666666777777777653
No 178
>2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=61.15 E-value=39 Score=29.71 Aligned_cols=40 Identities=15% Similarity=0.204 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007579 460 LEHKVQTLQTEATTLSAQLTLLQRDSVGLTNQNNELKFRL 499 (597)
Q Consensus 460 LE~KVq~LQtEN~tLsaQLtlLqre~~~L~aEN~ELK~RL 499 (597)
.+.++..|..+...-..+-...+.....+..|..+|..-|
T Consensus 24 ~~~e~~~L~~~l~eE~~~R~~aE~~~~~ie~ElEeLTasL 63 (97)
T 2eqb_B 24 RDDEVKRLREDIAKENELRTKAEEEADKLNKEVEDLTASL 63 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444455555555555555555555555555555555544
No 179
>2dgc_A Protein (GCN4); basic domain, leucine zipper, DNA binding, eukaryotic regulatory protein, transcription/DNA complex; HET: DNA; 2.20A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1dgc_A* 1ld4_E 1ysa_C* 3p8m_D
Probab=60.44 E-value=12 Score=30.00 Aligned_cols=23 Identities=17% Similarity=0.216 Sum_probs=9.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 007579 480 LLQRDSVGLTNQNNELKFRLQAM 502 (597)
Q Consensus 480 lLqre~~~L~aEN~ELK~RLqaL 502 (597)
.|+.+...|..+|.+|+.++..|
T Consensus 34 ~Le~~v~~L~~eN~~L~~ev~~L 56 (63)
T 2dgc_A 34 QLEDKVEELLSKNYHLENEVARL 56 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333334444444444444333
No 180
>2zxx_A Geminin; coiled-coil, cell cycle, coiled coil, DNA replication inhibitor, phosphoprotein, DNA-binding, nucleus, proto-oncogene; HET: DNA; 2.80A {Mus musculus}
Probab=59.97 E-value=18 Score=30.77 Aligned_cols=32 Identities=16% Similarity=0.176 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007579 468 QTEATTLSAQLTLLQRDSVGLTNQNNELKFRL 499 (597)
Q Consensus 468 QtEN~tLsaQLtlLqre~~~L~aEN~ELK~RL 499 (597)
-.||..|..+|..++.+...|..||..|+.=+
T Consensus 33 L~EN~~Lh~~ie~~~eEi~~LkeEN~~L~el~ 64 (79)
T 2zxx_A 33 LKENEKLHKEIEQKDSEIARLRKENKDLAEVA 64 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35889999999999999999999998886533
No 181
>3htk_A Structural maintenance of chromosomes protein 5; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=59.78 E-value=46 Score=25.44 Aligned_cols=9 Identities=33% Similarity=0.541 Sum_probs=3.2
Q ss_pred HHHHHHHHH
Q 007579 457 ISELEHKVQ 465 (597)
Q Consensus 457 IeELE~KVq 465 (597)
+.+++.++.
T Consensus 14 ~~~~~~~~~ 22 (60)
T 3htk_A 14 VEELTEKCS 22 (60)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 333333333
No 182
>3m48_A General control protein GCN4; leucine zipper, synthetic peptide, alpha helix, activa amino-acid biosynthesis, DNA-binding, nucleus; 1.45A {Synthetic} PDB: 3i1g_A 2ahp_A* 2o7h_A
Probab=59.68 E-value=11 Score=27.57 Aligned_cols=16 Identities=44% Similarity=0.360 Sum_probs=10.1
Q ss_pred HHHHHHHHHHHHHHhc
Q 007579 513 NEALTAEVRRLKVATQ 528 (597)
Q Consensus 513 nEaLkeEVqrLK~a~g 528 (597)
|..|..||.||+..++
T Consensus 16 n~~Le~EV~RLk~Ll~ 31 (33)
T 3m48_A 16 NWNLENEVARLKKLVG 31 (33)
T ss_dssp HHHHHHHHHHHHHHTT
T ss_pred hHHHHHHHHHHHHHhh
Confidence 4455567777776654
No 183
>3swk_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural; 1.70A {Homo sapiens}
Probab=59.35 E-value=29 Score=29.24 Aligned_cols=59 Identities=12% Similarity=0.161 Sum_probs=33.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 007579 471 ATTLSAQLTLLQRDSVGLTNQNNELKFRLQAMEQQAQLRDALNEALTAEVRRLKVATQE 529 (597)
Q Consensus 471 N~tLsaQLtlLqre~~~L~aEN~ELK~RLqaLEqQaqLrdALnEaLkeEVqrLK~a~gE 529 (597)
...|+.+|..+..+...|..|...++.-+..+.....---.+...+..|+..||..+.+
T Consensus 2 i~eLr~qi~~l~~e~~~l~~e~dn~~~~~edfk~KyE~E~~~R~~~E~d~~~LrkdvD~ 60 (86)
T 3swk_A 2 MRELRRQVDQLTNDKARVEVERDNLAEDIMRLREKLQEEMLQREEAENTLQSFRQDVDN 60 (86)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHH
Confidence 34667777777777777776666666655544222111112334455666777766554
No 184
>3c3f_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-alpha-beta) backbone...; helix bundle, foldamer, unknown function, de novo protein; HET: B3K B3D B3E BIL B3L BAL; 2.00A {Synthetic} SCOP: h.1.3.1
Probab=58.71 E-value=14 Score=27.20 Aligned_cols=17 Identities=18% Similarity=0.044 Sum_probs=10.6
Q ss_pred HHHHHHHHHHHHHHhcc
Q 007579 513 NEALTAEVRRLKVATQE 529 (597)
Q Consensus 513 nEaLkeEVqrLK~a~gE 529 (597)
+..|..||.|||..+++
T Consensus 17 ~~~Le~EV~RLk~ll~~ 33 (34)
T 3c3f_A 17 LYHXENEXARIXKLLXE 33 (34)
T ss_dssp HHHHHHHHHHHHHHHC-
T ss_pred hhHHHHHHHHHHHHHhc
Confidence 44556677777776653
No 185
>1s1c_X RHO-associated, coiled-coil containing protein kinase 1; GTPase, RHO kinase, ROCK, signaling protein; HET: GNP; 2.60A {Homo sapiens} SCOP: h.1.27.1
Probab=58.29 E-value=81 Score=26.35 Aligned_cols=32 Identities=13% Similarity=0.181 Sum_probs=27.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007579 459 ELEHKVQTLQTEATTLSAQLTLLQRDSVGLTN 490 (597)
Q Consensus 459 ELE~KVq~LQtEN~tLsaQLtlLqre~~~L~a 490 (597)
+|...|..|..|...|..++..+++++..+..
T Consensus 3 ~L~k~i~~l~~E~eel~~klk~~~ee~~~~~e 34 (71)
T 1s1c_X 3 MLTKDIEILRRENEELTEKMKKAEEEYKLEKE 34 (71)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 68888999999999999999988888777663
No 186
>3ghg_C Fibrinogen gamma chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 1deq_C
Probab=58.09 E-value=93 Score=33.17 Aligned_cols=30 Identities=7% Similarity=0.181 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccccC
Q 007579 503 EQQAQLRDALNEALTAEVRRLKVATQEMAS 532 (597)
Q Consensus 503 EqQaqLrdALnEaLkeEVqrLK~a~gEi~~ 532 (597)
+.+...+..+.+.....|+.|+.++.++..
T Consensus 104 ~~~i~~l~~~~~~~~~~i~~L~~~v~~l~~ 133 (411)
T 3ghg_C 104 DSSIRYLQEIYNSNNQKIVNLKEKVAQLEA 133 (411)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333444444555556555555443
No 187
>3htk_A Structural maintenance of chromosomes protein 5; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=58.07 E-value=60 Score=24.78 Aligned_cols=45 Identities=11% Similarity=0.151 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007579 458 SELEHKVQTLQTEATTLSAQLTLLQRDSVGLTNQNNELKFRLQAM 502 (597)
Q Consensus 458 eELE~KVq~LQtEN~tLsaQLtlLqre~~~L~aEN~ELK~RLqaL 502 (597)
..|+..+..+..+...+...+..+...+..+...-+..+..|..+
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~l~~~~~~I~~~ 52 (60)
T 3htk_A 8 KTLENQVEELTEKCSLKTDEFLKAKEKINEIFEKLNTIRDEVIKK 52 (60)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555555544445555555444444444444444444444443
No 188
>4e61_A Protein BIM1; EB1-like motif, coiled-coil, spindle orientation, mitosis, K phosphorylation, mitotic spindle, microtubules, cell cycle; 2.45A {Saccharomyces cerevisiae}
Probab=57.85 E-value=45 Score=29.72 Aligned_cols=49 Identities=20% Similarity=0.238 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007579 471 ATTLSAQLTLLQRDSVGLTNQNNELKFRLQAMEQQAQLRDALNEALTAEVRRL 523 (597)
Q Consensus 471 N~tLsaQLtlLqre~~~L~aEN~ELK~RLqaLEqQaqLrdALnEaLkeEVqrL 523 (597)
+..|.+++...+.+...|..+..+||..++.||.+ ||.-...|+ .|+.|
T Consensus 6 ~~al~~eL~~~~~ei~~L~~ei~eLk~~ve~lEkE---RDFYF~KLR-dIEiL 54 (106)
T 4e61_A 6 LVAIQAELTKSQETIGSLNEEIEQYKGTVSTLEIE---REFYFNKLR-DIEIL 54 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHH-HHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHH-HHHHH
No 189
>1a93_B MAX protein, coiled coil, LZ; leucine zipper, 2D solution structure, H-bonds, buried salt bridge, proto-oncogene, nuclear protein; NMR {Mus musculus} SCOP: h.1.3.1 PDB: 2a93_B
Probab=57.83 E-value=14 Score=27.25 Aligned_cols=27 Identities=26% Similarity=0.241 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007579 476 AQLTLLQRDSVGLTNQNNELKFRLQAM 502 (597)
Q Consensus 476 aQLtlLqre~~~L~aEN~ELK~RLqaL 502 (597)
.+....+.+...|..+|..|..++..|
T Consensus 7 rKn~a~qqDIddlkrQN~~Le~Qir~l 33 (34)
T 1a93_B 7 RKNDTHQQDIDDLKRQNALLEQQVRAL 33 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred hhhHhhHhhHHHHHHHHHHHHHHHHhc
Confidence 333444444444444555555544433
No 190
>2wuj_A Septum site-determining protein diviva; bacterial cell division, septation, cell cycle, sporulation; 1.40A {Bacillus subtilis} PDB: 2wuk_A
Probab=57.40 E-value=9.8 Score=29.88 Aligned_cols=28 Identities=14% Similarity=0.360 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007579 455 RYISELEHKVQTLQTEATTLSAQLTLLQ 482 (597)
Q Consensus 455 qYIeELE~KVq~LQtEN~tLsaQLtlLq 482 (597)
.|++++...+..|..||..|+.++..|+
T Consensus 27 ~FLd~v~~~~~~l~~e~~~L~~~~~~l~ 54 (57)
T 2wuj_A 27 EFLAQVRKDYEIVLRKKTELEAKVNELD 54 (57)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3555566666666555555555555444
No 191
>1dip_A Delta-sleep-inducing peptide immunoreactive peptide; structure, leucine zipper, PIG, acetylation; NMR {Sus scrofa} SCOP: h.1.12.1
Probab=56.80 E-value=8.2 Score=32.80 Aligned_cols=17 Identities=12% Similarity=0.214 Sum_probs=10.1
Q ss_pred HHHHHHHHHHHHHHHHH
Q 007579 491 QNNELKFRLQAMEQQAQ 507 (597)
Q Consensus 491 EN~ELK~RLqaLEqQaq 507 (597)
|-..||.+|..|+.+..
T Consensus 16 EVevLKe~I~EL~e~~~ 32 (78)
T 1dip_A 16 EVEILKEQIRELVEKNS 32 (78)
T ss_dssp SCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 44566777777665533
No 192
>2r2v_A GCN4 leucine zipper; coiled coils, anti-parallel tetramer, protein design, de novo protein; HET: CIT; 1.90A {Saccharomyces cerevisiae} SCOP: h.1.3.1
Probab=56.79 E-value=18 Score=26.63 Aligned_cols=27 Identities=7% Similarity=0.255 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007579 457 ISELEHKVQTLQTEATTLSAQLTLLQR 483 (597)
Q Consensus 457 IeELE~KVq~LQtEN~tLsaQLtlLqr 483 (597)
+..||.||+.|-.++..|..++..|+.
T Consensus 3 MnQledKvEel~~~~~~l~nEv~Rl~~ 29 (34)
T 2r2v_A 3 LKQVADKLEEVASKLYHNANELARVAK 29 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 567888998888888888877766653
No 193
>2i1j_A Moesin; FERM, coiled-coil, C-ermad, ERM, radixin, ezrin, MER actin binding, masking, regulation, SELF-inhibition, cell A membrane protein; 2.10A {Spodoptera frugiperda} PDB: 2i1k_A 1e5w_A
Probab=56.69 E-value=8.7 Score=41.81 Aligned_cols=27 Identities=22% Similarity=0.431 Sum_probs=2.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007579 498 RLQAMEQQAQLRDALNEALTAEVRRLK 524 (597)
Q Consensus 498 RLqaLEqQaqLrdALnEaLkeEVqrLK 524 (597)
.+..|+++..-++...+.|++|+...+
T Consensus 420 ~~~~~~~~~~~~~~e~~~~~~~~~~a~ 446 (575)
T 2i1j_A 420 EVSRIQQEVELKDSETRRLQEEVEDAR 446 (575)
T ss_dssp ----------------------CHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444445554443333
No 194
>4gkw_A Spindle assembly abnormal protein 6; double helix, SAS-5, centriole, structural protein; 3.30A {Caenorhabditis elegans}
Probab=56.08 E-value=1.3e+02 Score=28.13 Aligned_cols=77 Identities=25% Similarity=0.332 Sum_probs=40.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHH------HHHH-HHHHHHHHHHHHHHHHHHHH-------H
Q 007579 456 YISELEHKVQTLQTEATTLSAQLTLLQRDSVGLTN---QNN------ELKF-RLQAMEQQAQLRDALNEALT-------A 518 (597)
Q Consensus 456 YIeELE~KVq~LQtEN~tLsaQLtlLqre~~~L~a---EN~------ELK~-RLqaLEqQaqLrdALnEaLk-------e 518 (597)
.++.|..+-...|.|...|++++..+++.+..... .|. .|-. +|-.||-.++-+|...+.|+ +
T Consensus 47 KVDQlqKRn~~HQKEi~~Lrae~~~~QRn~~K~~~~Lkrn~~qQnQQSlDiRKLrELEADLKEKDsMVe~LT~TiG~LrK 126 (167)
T 4gkw_A 47 KVDQLQKRNVAHQKEIGKLRAELGTAQRNLEKADQLLKRNSQQQNQQSLDMRKLGELEADLKEKDSMVESLTETIGILRK 126 (167)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHTHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHhccHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhhHHHhHhhhhHHHHHHHHhHHhhhhHHHHHHHHHHHHHHH
Confidence 34555566666667777777777777776543221 111 1211 24555555555565555444 4
Q ss_pred HHHHHHHHhccccC
Q 007579 519 EVRRLKVATQEMAS 532 (597)
Q Consensus 519 EVqrLK~a~gEi~~ 532 (597)
|++.=|..+.|+++
T Consensus 127 ELEdEklK~~E~Md 140 (167)
T 4gkw_A 127 ELENEKLKAAENMD 140 (167)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 44444444454443
No 195
>2zqm_A Prefoldin beta subunit 1; chaperone; HET: CIT; 1.90A {Thermococcus SP} PDB: 2zdi_A
Probab=56.05 E-value=37 Score=28.57 Aligned_cols=14 Identities=7% Similarity=0.143 Sum_probs=5.4
Q ss_pred HHHHHHHHHHHHHH
Q 007579 452 RKMRYISELEHKVQ 465 (597)
Q Consensus 452 RKKqYIeELE~KVq 465 (597)
.+..-+.+++.-..
T Consensus 31 ~l~~~~~e~~~~~~ 44 (117)
T 2zqm_A 31 KVQLELTEAKKALD 44 (117)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 33333444443333
No 196
>1ik9_A DNA repair protein XRCC4; DNA END joining, double-strand break repair, V(D)J recombination, protein-protein complex, coiled coil; HET: DNA; 2.30A {Homo sapiens} SCOP: b.59.1.1 h.1.11.1 PDB: 3ii6_A* 1fu1_A* 3rwr_A*
Probab=55.99 E-value=1.3e+02 Score=29.03 Aligned_cols=38 Identities=21% Similarity=0.138 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007579 459 ELEHKVQTLQTEATTLSAQLTLLQRDSVGLTNQNNELK 496 (597)
Q Consensus 459 ELE~KVq~LQtEN~tLsaQLtlLqre~~~L~aEN~ELK 496 (597)
+|+.++..|+.+|..|...+..|..++..+..+..++.
T Consensus 136 ~~~~~~~~L~~e~~~l~~~~~~l~~qlE~~v~~K~~~E 173 (213)
T 1ik9_A 136 ENQAKNEHLQKENERLLRDWNDVQGRFEKAVSAKEALE 173 (213)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55555555555555555555544444444444444333
No 197
>3c3g_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-beta) backbone; helix bundle, foldamer, unknown function protein; HET: HMR B3Q B3D B3E B3L BIL B3K BAL GOL; 1.80A {Synthetic} PDB: 3heu_A* 3het_A* 3hev_A* 3hew_A* 3hey_A* 3hex_A* 3c3h_A*
Probab=55.27 E-value=17 Score=26.57 Aligned_cols=17 Identities=18% Similarity=0.181 Sum_probs=10.2
Q ss_pred HHHHHHHHHHHHHHhcc
Q 007579 513 NEALTAEVRRLKVATQE 529 (597)
Q Consensus 513 nEaLkeEVqrLK~a~gE 529 (597)
+..|..||.|||..+++
T Consensus 16 ~~~Le~EV~RLk~lL~~ 32 (33)
T 3c3g_A 16 XYHXENXLARIKXLLXE 32 (33)
T ss_dssp HHHHHHHHHHHHHHHC-
T ss_pred hhHHHHHHHHHHHHHcc
Confidence 44555677777766653
No 198
>2b9c_A Striated-muscle alpha tropomyosin; alpha-helix, coiled coil, alanine, axial stagger, radius, SIDE-chain packing, crystal packing; 2.30A {Rattus norvegicus} SCOP: h.1.5.1
Probab=54.98 E-value=1.3e+02 Score=27.65 Aligned_cols=65 Identities=12% Similarity=0.166 Sum_probs=32.3
Q ss_pred ChHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007579 432 DPKRAKRILANRQSAARSKERKMRYISELEHKVQTLQTEATTLSAQLTLLQRDSVGLTNQNNELKFRLQAM 502 (597)
Q Consensus 432 DpKR~KRILaNRESAaRSReRKKqYIeELE~KVq~LQtEN~tLsaQLtlLqre~~~L~aEN~ELK~RLqaL 502 (597)
+-.|.++.|-||.-+-.-| |..||.+++........--.+...+.+....+..+......|+...
T Consensus 35 E~eR~~k~lE~r~~~deEr------~~~lE~qLkeak~~aeeadrKyeE~~RKl~~~E~dLeraeeRae~a 99 (147)
T 2b9c_A 35 ESERGMKVIESRAQKDEEK------MEIQEIQLKEAKHIAEDADRKYEEVARKLVIIESDLERAEERAELS 99 (147)
T ss_dssp HHTHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhcccHHH------HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3457788888988866654 4455555554444433333333333333333333333333333333
No 199
>1dh3_A Transcription factor CREB; protein-DNA complex, transcription/DNA complex; HET: DNA; 3.00A {Mus musculus} SCOP: h.1.3.1
Probab=54.54 E-value=15 Score=28.77 Aligned_cols=26 Identities=31% Similarity=0.341 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007579 478 LTLLQRDSVGLTNQNNELKFRLQAME 503 (597)
Q Consensus 478 LtlLqre~~~L~aEN~ELK~RLqaLE 503 (597)
+..|+.....|..||..|+.++..|.
T Consensus 24 ~~~LE~~v~~L~~eN~~L~~~~~~L~ 49 (55)
T 1dh3_A 24 VKSLENRVAVLENQNKTLIEELKALK 49 (55)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555555556666666666665553
No 200
>3cl3_D NF-kappa-B essential modulator; death effector domain, coiled-coil, coiled coil, cytoplasm, disease mutation, ectodermal dysplasia; 3.20A {Homo sapiens}
Probab=54.20 E-value=19 Score=33.24 Aligned_cols=18 Identities=22% Similarity=0.307 Sum_probs=8.1
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 007579 490 NQNNELKFRLQAMEQQAQ 507 (597)
Q Consensus 490 aEN~ELK~RLqaLEqQaq 507 (597)
.+|..|+.+++.|+..++
T Consensus 55 ~~~d~L~lQ~esmeaalk 72 (130)
T 3cl3_D 55 VQVDQLRMQGQSVEAALR 72 (130)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 344444444444444433
No 201
>3t98_B Nucleoporin NUP58/NUP45; NUP62 complex, nuclear import, coiled-coil, HE hairpin, FG-repeat, NPC, nuclear tranport, TRA channel, karyopherin; 2.50A {Rattus norvegicus} PDB: 2osz_A
Probab=53.95 E-value=82 Score=27.14 Aligned_cols=18 Identities=22% Similarity=0.182 Sum_probs=8.3
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 007579 508 LRDALNEALTAEVRRLKV 525 (597)
Q Consensus 508 LrdALnEaLkeEVqrLK~ 525 (597)
-..+....|.++|+.+|.
T Consensus 62 aLAa~l~~lH~~V~~~Ke 79 (93)
T 3t98_B 62 ALAAQLQSIHENVKVLKE 79 (93)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 333444444455555544
No 202
>3mov_A Lamin-B1; LMNB1, B-type lamins, intermediate filament (IF), nucleus, coiled coil, structural genomics consortium, SGC, structural protein; 2.40A {Homo sapiens} PDB: 3tyy_A
Probab=53.57 E-value=26 Score=30.24 Aligned_cols=25 Identities=12% Similarity=0.061 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 007579 477 QLTLLQRDSVGLTNQNNELKFRLQA 501 (597)
Q Consensus 477 QLtlLqre~~~L~aEN~ELK~RLqa 501 (597)
++..++.....|..+...+|..++.
T Consensus 38 e~~~~q~~i~~lE~eL~~~r~e~~~ 62 (95)
T 3mov_A 38 EKDNSRRMLTDKEREMAEIRDQMQQ 62 (95)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444555555555555433
No 203
>3u06_A Protein claret segregational; motor domain, stalk rotation, power stroke, kinesin-14, MICR binding, NCD, transport, molecular motor; HET: ADP GOL; 2.35A {Drosophila melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A*
Probab=53.13 E-value=38 Score=35.58 Aligned_cols=44 Identities=14% Similarity=0.160 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007579 459 ELEHKVQTLQTEATTLSAQLTLLQRDSVGLTNQNNELKFRLQAM 502 (597)
Q Consensus 459 ELE~KVq~LQtEN~tLsaQLtlLqre~~~L~aEN~ELK~RLqaL 502 (597)
+|+.+++.|+.++..+.+++..+.+++.....+.+.|--.|+.|
T Consensus 14 ~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~rr~l~n~~~~l 57 (412)
T 3u06_A 14 HLRQRTEELLRCNEQQAAELETCKEQLFQSNMERKELHNTVMDL 57 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33333333444444444444444443333444444444444444
No 204
>2hy6_A General control protein GCN4; protein design, parallel heptamer, protein structure, biosyn protein; 1.25A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 2nrn_A 3crp_A 2b1f_A 3crp_B 2ipz_A 3ck4_A 3ck4_B 2b22_A 1ce9_A
Probab=53.05 E-value=17 Score=26.76 Aligned_cols=17 Identities=41% Similarity=0.374 Sum_probs=10.9
Q ss_pred HHHHHHHHHHHHHHhcc
Q 007579 513 NEALTAEVRRLKVATQE 529 (597)
Q Consensus 513 nEaLkeEVqrLK~a~gE 529 (597)
+..|..||.||+..+|+
T Consensus 17 ~~~Le~eV~RL~~ll~~ 33 (34)
T 2hy6_A 17 NYHLANAVARLAKAVGE 33 (34)
T ss_dssp HHHHHHHHHHHHHHHHC
T ss_pred hHHHHHHHHHHHHHhcc
Confidence 44555677777777664
No 205
>3m91_A Proteasome-associated ATPase; coil COIL alpha helix, ATP-binding, chaperone, nucleotide-BI proteasome, S-nitrosylation; 1.80A {Mycobacterium tuberculosis} PDB: 3m9h_A
Probab=52.64 E-value=52 Score=25.81 Aligned_cols=35 Identities=17% Similarity=0.125 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007579 467 LQTEATTLSAQLTLLQRDSVGLTNQNNELKFRLQA 501 (597)
Q Consensus 467 LQtEN~tLsaQLtlLqre~~~L~aEN~ELK~RLqa 501 (597)
|+.++..|.++...|...+.....|...|+.+|+.
T Consensus 14 l~~~l~~L~~rN~rL~~~L~~AR~el~~Lkeele~ 48 (51)
T 3m91_A 14 LEARIDSLAARNSKLMETLKEARQQLLALREEVDR 48 (51)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333333344444444443
No 206
>3bbp_D GRIP and coiled-coil domain-containing protein 2; golgi complex, GRIP domain, RAB GTPase, ARL GTPase, golgin, RAB effector, clAsp protein; HET: GTP; 3.00A {Homo sapiens}
Probab=52.48 E-value=12 Score=31.32 Aligned_cols=46 Identities=24% Similarity=0.242 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007579 458 SELEHKVQTLQTEATTLSAQLTLLQRDSVGLTNQNNELKFRLQAME 503 (597)
Q Consensus 458 eELE~KVq~LQtEN~tLsaQLtlLqre~~~L~aEN~ELK~RLqaLE 503 (597)
++|..++..++..+..|..=+.+-+..+..|+.+|+.||..|-.||
T Consensus 18 eel~~~L~~~~k~~~Hl~~LL~EsEatnarL~eq~~lLK~EIRRlE 63 (71)
T 3bbp_D 18 EELVQKLSSTTKSADHLNGLLRETEATNAILMEQIKLLKSEIRRLE 63 (71)
T ss_dssp -----------CTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHH
Confidence 3445555555555555555555555666666666666666555554
No 207
>3trt_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural protein; 2.30A {Homo sapiens} PDB: 3klt_A*
Probab=52.35 E-value=89 Score=24.99 Aligned_cols=40 Identities=18% Similarity=0.186 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007579 457 ISELEHKVQTLQTEATTLSAQLTLLQRDSVGLTNQNNELK 496 (597)
Q Consensus 457 IeELE~KVq~LQtEN~tLsaQLtlLqre~~~L~aEN~ELK 496 (597)
+++|...+..-..+....+.+|..|.+....|..|...||
T Consensus 37 ~eel~~~~~~~~~~l~~~k~Ei~elrr~iq~L~~el~slk 76 (77)
T 3trt_A 37 FADLSEAANRNNDALRQAKQESTEYRRQVQSLTMEVDALK 76 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 4566666666666666666666666666666666655443
No 208
>3uux_B Mitochondrial division protein 1; tetratricopeptide repeat, mitochondrial fission, mitochondri cytoplasm, apoptosis; 3.90A {Saccharomyces cerevisiae S288C}
Probab=52.32 E-value=31 Score=34.57 Aligned_cols=57 Identities=12% Similarity=0.181 Sum_probs=38.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007579 457 ISELEHKVQTLQTEATTLSAQLTLLQRDSVGLTNQNNELKFRLQAMEQQAQLRDALNEALTAEV 520 (597)
Q Consensus 457 IeELE~KVq~LQtEN~tLsaQLtlLqre~~~L~aEN~ELK~RLqaLEqQaqLrdALnEaLkeEV 520 (597)
++-|+.+......|+.+|-.+|+.| ..--+.+..||+.||+....++.....++..+
T Consensus 165 LelL~IRK~ma~sEI~EID~KI~~L-------~~mR~~vl~RLA~lEqdEl~LE~eL~~V~~Ri 221 (242)
T 3uux_B 165 LEFLNIQKNSTLSEIRDIEVEVENL-------RQKKEKLLGKIANIEQNQLLLEDNLKQIDDRL 221 (242)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Confidence 4566666666666666666666554 45566778889999988877777666665443
No 209
>3iox_A AGI/II, PA; alpha helix, PPII helix, supersandwich fold, surface adhesin WALL, peptidoglycan-anchor, cell adhesion; HET: PMS; 1.80A {Streptococcus mutans} PDB: 3ipk_A* 1jmm_A
Probab=51.76 E-value=1.9e+02 Score=31.75 Aligned_cols=28 Identities=18% Similarity=0.253 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007579 460 LEHKVQTLQTEATTLSAQLTLLQRDSVG 487 (597)
Q Consensus 460 LE~KVq~LQtEN~tLsaQLtlLqre~~~ 487 (597)
-|.+|..++.+|+.+.++.+.+++.+..
T Consensus 32 Ye~~~ae~~a~n~~i~aeNeaikkrNa~ 59 (497)
T 3iox_A 32 YEAAVAANNAANAALTAENTAIKKRNAD 59 (497)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhhHHHHHHHHHHHHHHHH
Confidence 3444444455444444444444444443
No 210
>2er8_A Regulatory protein Leu3; Zn(2)Cys(6) binuclear cluster motif, transcription activator/DNA complex; 2.85A {Saccharomyces cerevisiae} PDB: 2ere_A 2erg_A
Probab=51.75 E-value=7.5 Score=30.26 Aligned_cols=23 Identities=22% Similarity=0.273 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 007579 453 KMRYISELEHKVQTLQTEATTLS 475 (597)
Q Consensus 453 KKqYIeELE~KVq~LQtEN~tLs 475 (597)
+..|+++||.+|..|+.....|.
T Consensus 47 ~~~~~~~Le~ri~~Le~~l~~l~ 69 (72)
T 2er8_A 47 KRARNEAIEKRFKELTRTLTNLT 69 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCC-
T ss_pred cHHHHHHHHHHHHHHHHHHHHHh
Confidence 34789999999998877666554
No 211
>2bni_A General control protein GCN4; four helix bundle, antiparallel four helix bundle acyl transferase; HET: TYZ; 1.5A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 2ccn_A 1w5k_A* 2ccf_A 2cce_A 1w5j_A* 1uo2_A 1gcl_A 1uo1_A 1unv_A 1uo0_A 1unt_A 1uo5_A 1unz_A 1unx_A 1unu_A 1unw_A 1uo4_A 1uo3_A 1uny_A 1u9f_A* ...
Probab=51.70 E-value=18 Score=26.66 Aligned_cols=17 Identities=24% Similarity=0.313 Sum_probs=10.1
Q ss_pred HHHHHHHHHHHHHHhcc
Q 007579 513 NEALTAEVRRLKVATQE 529 (597)
Q Consensus 513 nEaLkeEVqrLK~a~gE 529 (597)
+..|..||.|||..+++
T Consensus 17 ~~~L~~EV~RLk~lL~~ 33 (34)
T 2bni_A 17 GHHICNELARIKKLLGE 33 (34)
T ss_dssp HHHHHHHHHHHHHHC--
T ss_pred cHHHHHHHHHHHHHhcc
Confidence 44566677777776653
No 212
>3k29_A Putative uncharacterized protein; YSCO, type III secretion apparatus, S genomics, csgid; HET: MSE; 2.00A {Chlamydia trachomatis}
Probab=51.66 E-value=1.7e+02 Score=28.03 Aligned_cols=45 Identities=11% Similarity=0.217 Sum_probs=28.3
Q ss_pred HHHhhhcchHHHHhhhccChHHHHHHHHhhHHHHHHHHHHHHHHHHH
Q 007579 414 AELKKIMANEKLAEIALTDPKRAKRILANRQSAARSKERKMRYISEL 460 (597)
Q Consensus 414 ~E~KKim~~ekLaElAl~DpKR~KRILaNRESAaRSReRKKqYIeEL 460 (597)
+++.|++...+.+ | ..+-.+++++..-|.-..+-++-|..|+-++
T Consensus 19 e~aek~~~~k~~~-l-e~ek~~l~~~e~~r~k~~~h~~~k~~qlre~ 63 (169)
T 3k29_A 19 DRAEKVVKEKRRL-L-ELEQEKLRERESERDKVKNHYMQKIRQLREQ 63 (169)
T ss_dssp HHHHHHHHHHHHH-H-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH-H-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556666554433 1 1234667778888888888888887665543
No 213
>1lwu_C Fibrinogen gamma chain; heterotrimer, protein-peptide complex, blood clotting; HET: NDG MAN NAG BMA GAL; 2.80A {Petromyzon marinus} SCOP: d.171.1.1 h.1.8.1 PDB: 1n73_C*
Probab=51.42 E-value=39 Score=34.81 Aligned_cols=39 Identities=13% Similarity=-0.015 Sum_probs=14.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007579 464 VQTLQTEATTLSAQLTLLQRDSVGLTNQNNELKFRLQAM 502 (597)
Q Consensus 464 Vq~LQtEN~tLsaQLtlLqre~~~L~aEN~ELK~RLqaL 502 (597)
++.|..|...|...|...+.+...|......++.+|+.|
T Consensus 7 ~~~~~~~~~~~e~~i~~~~~~i~~L~~~l~~~~~~i~~l 45 (323)
T 1lwu_C 7 VQKILEEVRILEQIGVSHDAQIQELSEMWRVNQQFVTRL 45 (323)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333333333333334444443
No 214
>2e7s_A RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 3.00A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=50.85 E-value=16 Score=33.80 Aligned_cols=32 Identities=22% Similarity=0.352 Sum_probs=8.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007579 495 LKFRLQAMEQQAQLRDALNEALTAEVRRLKVA 526 (597)
Q Consensus 495 LK~RLqaLEqQaqLrdALnEaLkeEVqrLK~a 526 (597)
++.+...|+.+..=++.+.+.+.+.+..||..
T Consensus 101 ~e~r~~~L~~ql~e~e~ll~~lq~QL~~LK~v 132 (135)
T 2e7s_A 101 IEILNKRLTEQLREKDMLLDTLTLQLKNLKKV 132 (135)
T ss_dssp HHHHHHHHHHTTTHHHHCC-------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444455555555555555543
No 215
>1uix_A RHO-associated kinase; coiled-coil, transferase; HET: MSE; 1.80A {Bos taurus} SCOP: h.1.27.1
Probab=50.84 E-value=78 Score=26.47 Aligned_cols=34 Identities=21% Similarity=0.211 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007579 460 LEHKVQTLQTEATTLSAQLTLLQRDSVGLTNQNN 493 (597)
Q Consensus 460 LE~KVq~LQtEN~tLsaQLtlLqre~~~L~aEN~ 493 (597)
|...|..|..|...|..++..+++++..+..+-.
T Consensus 2 ~~k~v~~l~~E~eel~~klk~~~ee~~~~~eee~ 35 (71)
T 1uix_A 2 STSDVANLANEKEELNNKLKEAQEQLSRLKDEEI 35 (71)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5677888888888888888888888777664433
No 216
>4fla_A Regulation of nuclear PRE-mRNA domain-containing 1B; structural genomics consortium, SGC, transcription; 2.20A {Homo sapiens}
Probab=50.65 E-value=1.6e+02 Score=27.30 Aligned_cols=45 Identities=16% Similarity=0.042 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007579 456 YISELEHKVQTLQTEATTLSAQLTLLQRDSVGLTNQNNELKFRLQ 500 (597)
Q Consensus 456 YIeELE~KVq~LQtEN~tLsaQLtlLqre~~~L~aEN~ELK~RLq 500 (597)
...+.+.-+..|..=|..|.+++..-.+-...|..-...++..+.
T Consensus 73 l~~~veeA~~~L~eYn~rL~~E~~dR~~L~~~L~~~~~~~~~~l~ 117 (152)
T 4fla_A 73 LSKTVDEACLLLAEYNGRLAAELEDRRQLARMLVEYTQNQKDVLS 117 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444455555555555555444444444444444444443
No 217
>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B
Probab=50.50 E-value=26 Score=28.65 Aligned_cols=22 Identities=27% Similarity=0.244 Sum_probs=9.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 007579 479 TLLQRDSVGLTNQNNELKFRLQ 500 (597)
Q Consensus 479 tlLqre~~~L~aEN~ELK~RLq 500 (597)
..|+.+...|..+|..|+.+|.
T Consensus 57 ~~l~~e~~~L~~~~~~L~~~l~ 78 (83)
T 1nkp_B 57 HTHQQDIDDLKRQNALLEQQVR 78 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333344444444444443
No 218
>1uii_A Geminin; human, DNA replication, cell cycle; 2.00A {Homo sapiens} SCOP: h.1.28.1
Probab=49.98 E-value=93 Score=26.76 Aligned_cols=32 Identities=19% Similarity=0.194 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007579 468 QTEATTLSAQLTLLQRDSVGLTNQNNELKFRL 499 (597)
Q Consensus 468 QtEN~tLsaQLtlLqre~~~L~aEN~ELK~RL 499 (597)
-.||..|..+|..|+.+...|..+|.+|+.-.
T Consensus 45 L~EN~~Lh~~ie~l~eEi~~lk~en~eL~ela 76 (83)
T 1uii_A 45 LKENEKLHKEIEQKDNEIARLKKENKELAEVA 76 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35788888888888888888888887776533
No 219
>3qwe_A GMIP, GEM-interacting protein; structural genomics consortium, SGC, protein binding; 2.40A {Homo sapiens}
Probab=49.12 E-value=2.2e+02 Score=28.70 Aligned_cols=28 Identities=11% Similarity=-0.031 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007579 474 LSAQLTLLQRDSVGLTNQNNELKFRLQA 501 (597)
Q Consensus 474 LsaQLtlLqre~~~L~aEN~ELK~RLqa 501 (597)
+..++.....+|...+.+-+..+..|..
T Consensus 182 a~~K~eeAd~~Y~~~V~~a~~~r~eL~~ 209 (279)
T 3qwe_A 182 AQAKAQEAEALYQACVREANARQQDLEI 209 (279)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555566666666666666666555543
No 220
>3iv1_A Tumor susceptibility gene 101 protein; coiled_COIL, tumorigenesis, CELL_cycle regulation, alternative splicing, cell cycle, cell division; HET: MSE; 2.50A {Homo sapiens}
Probab=48.86 E-value=1.2e+02 Score=25.64 Aligned_cols=48 Identities=23% Similarity=0.248 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007579 470 EATTLSAQLTLLQRDSVGLTNQNNELKFRLQAMEQQAQLRDALNEALT 517 (597)
Q Consensus 470 EN~tLsaQLtlLqre~~~L~aEN~ELK~RLqaLEqQaqLrdALnEaLk 517 (597)
......++|..|.+....|..-...|+.-|..|+++..-.+.-.+.|+
T Consensus 19 ~~~q~qaEl~sLrrT~~EL~~G~~KL~~mi~~l~~E~~~l~~ni~~lk 66 (78)
T 3iv1_A 19 EMDRAQAELNALKRTEEDLKKGHQKLEEMVTRLDQEVAEVDKNIELLK 66 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444454455555555555555555544443333333333
No 221
>1wt6_A Myotonin-protein kinase; coiled-coil, kinase activation, DMPK, molecular replacement, transferase; 1.60A {Homo sapiens}
Probab=48.68 E-value=1.3e+02 Score=25.81 Aligned_cols=16 Identities=13% Similarity=0.030 Sum_probs=8.9
Q ss_pred hhHHHHHHHHHHHHHH
Q 007579 442 NRQSAARSKERKMRYI 457 (597)
Q Consensus 442 NRESAaRSReRKKqYI 457 (597)
|=+||..+--|-|+-|
T Consensus 14 eLQSALeaEIqAKQ~i 29 (81)
T 1wt6_A 14 ELQEALEEEVLTRQSL 29 (81)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 5566666655555433
No 222
>1fmh_A General control protein GCN4; coiled coil, leucine zipper, inter-helical ION pairing, transcription; NMR {Synthetic} SCOP: k.6.1.1 PDB: 1u2u_A
Probab=48.41 E-value=21 Score=25.61 Aligned_cols=28 Identities=14% Similarity=0.334 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007579 478 LTLLQRDSVGLTNQNNELKFRLQAMEQQ 505 (597)
Q Consensus 478 LtlLqre~~~L~aEN~ELK~RLqaLEqQ 505 (597)
++.|+++.....+||..|.+.+..||.+
T Consensus 3 vaqlekevaqaeaenyqleqevaqlehe 30 (33)
T 1fmh_A 3 VAQLEKEVAQAEAENYQLEQEVAQLEHE 30 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHh
Confidence 4455666666777888887777766654
No 223
>2dnx_A Syntaxin-12; snare, HABC domain, UP and DOWN three helix bundle, LEFT-handed twist, membrane fusion, vesicle transport, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=48.38 E-value=57 Score=28.92 Aligned_cols=31 Identities=26% Similarity=0.347 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007579 458 SELEHKVQTLQTEATTLSAQLTLLQRDSVGL 488 (597)
Q Consensus 458 eELE~KVq~LQtEN~tLsaQLtlLqre~~~L 488 (597)
.+|..++..++.+...|...+...-++...|
T Consensus 47 ~~LR~kl~~~~~~t~~l~k~ts~~lk~L~~~ 77 (130)
T 2dnx_A 47 SKLQENLQQLQHSTNQLAKETNELLKELGSL 77 (130)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4555555555555555555555555555544
No 224
>2wuj_A Septum site-determining protein diviva; bacterial cell division, septation, cell cycle, sporulation; 1.40A {Bacillus subtilis} PDB: 2wuk_A
Probab=48.23 E-value=14 Score=28.91 Aligned_cols=28 Identities=14% Similarity=0.351 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007579 478 LTLLQRDSVGLTNQNNELKFRLQAMEQQ 505 (597)
Q Consensus 478 LtlLqre~~~L~aEN~ELK~RLqaLEqQ 505 (597)
|..+..++..|..||.+|+.++..|+.+
T Consensus 29 Ld~v~~~~~~l~~e~~~L~~~~~~l~~~ 56 (57)
T 2wuj_A 29 LAQVRKDYEIVLRKKTELEAKVNELDER 56 (57)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHC----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3445566777888888888888877654
No 225
>1j1d_B Troponin T, TNT; THIN filament, muscle regulation, Ca2+ binding protein, EF- hand, coiled-coil, contractIle protein; 2.61A {Homo sapiens} SCOP: h.1.25.1 PDB: 1j1e_B
Probab=47.88 E-value=1.4e+02 Score=26.32 Aligned_cols=18 Identities=22% Similarity=0.283 Sum_probs=7.8
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 007579 467 LQTEATTLSAQLTLLQRD 484 (597)
Q Consensus 467 LQtEN~tLsaQLtlLqre 484 (597)
|+.-+.+|...|..|+.+
T Consensus 47 L~e~~keLh~~I~~LEeE 64 (106)
T 1j1d_B 47 LREKAKELWQTIYNLEAE 64 (106)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHh
Confidence 444444444444444433
No 226
>2no2_A HIP-I, huntingtin-interacting protein 1; clathrin light chain binding, HIP1 coiled-coil domain, endocytosis, clathrin SELF-assembly, cell adhesion; 2.80A {Homo sapiens}
Probab=47.72 E-value=1.4e+02 Score=26.07 Aligned_cols=22 Identities=18% Similarity=0.232 Sum_probs=11.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 007579 447 ARSKERKMRYISELEHKVQTLQ 468 (597)
Q Consensus 447 aRSReRKKqYIeELE~KVq~LQ 468 (597)
+.+..=.-+++.+|+.+|..++
T Consensus 21 ~q~~~e~e~~k~eL~~~~~~~~ 42 (107)
T 2no2_A 21 RQAQVDLEREKKELEDSLERIS 42 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444455556666666644
No 227
>1jcd_A Major outer membrane lipoprotein; protein folding, coiled coil, helix capping, alanine-zipper, membrane protein; 1.30A {Escherichia coli} SCOP: h.1.16.1 PDB: 1eq7_A 1t8z_A* 2guv_A 2gus_A 1jcc_A 1kfn_A 1kfm_A
Probab=47.60 E-value=91 Score=24.56 Aligned_cols=29 Identities=17% Similarity=0.177 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007579 462 HKVQTLQTEATTLSAQLTLLQRDSVGLTN 490 (597)
Q Consensus 462 ~KVq~LQtEN~tLsaQLtlLqre~~~L~a 490 (597)
.++..|..+..+|..+|..|..+...|..
T Consensus 4 aki~~Lss~V~~L~~kVdqLssdV~al~~ 32 (52)
T 1jcd_A 4 AKADQASSDAQTANAKADQASNDANAARS 32 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666666666666666666655444443
No 228
>2nrj_A HBL B protein; enterotoxin, hemolysis, transmembrane, structural genomics, PSI-2, protein structure initiative; 2.03A {Bacillus cereus} SCOP: h.4.4.2
Probab=47.57 E-value=71 Score=32.67 Aligned_cols=79 Identities=15% Similarity=0.101 Sum_probs=48.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Q 007579 451 ERKMRYISELEHKVQTLQTEATTLSAQLTLLQRDSVGLTNQNNELKFRLQAMEQQAQLRDALNEALTAEVRRLKVATQEM 530 (597)
Q Consensus 451 eRKKqYIeELE~KVq~LQtEN~tLsaQLtlLqre~~~L~aEN~ELK~RLqaLEqQaqLrdALnEaLkeEVqrLK~a~gEi 530 (597)
..-+++|..|...++..+.+...+...|..++. .|......|+.....|...+.-..+..+.|++||+.|+..+...
T Consensus 119 ~~l~~~L~~L~~~i~~~q~~~~~~~~~L~~F~~---~l~~d~~~f~~~~~~l~~~L~~~~~~I~~Lq~eI~~l~~~I~~~ 195 (346)
T 2nrj_A 119 ETLKEGITDLRGEIQQNQKYAQQLIEELTKLRD---SIGHDVRAFGSNKELLQSILKNQGADVDADQKRLEEVLGSVNYY 195 (346)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHTGGGCGG
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHhhHhhHHhHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHH
Confidence 334556666666666666666666666655554 33444444555555555555555566788899999888877644
Q ss_pred cC
Q 007579 531 AS 532 (597)
Q Consensus 531 ~~ 532 (597)
..
T Consensus 196 ~~ 197 (346)
T 2nrj_A 196 KQ 197 (346)
T ss_dssp GC
T ss_pred HH
Confidence 43
No 229
>2wq1_A General control protein GCN4; TAA, nucleus, coiled coil, DNA-binding, protein export, ION coordination, polar core residues; 1.08A {Saccharomyces cerevisiae} PDB: 2wq0_A 2wq2_A 2wq3_A 2wpz_A 2wpy_A 1ij0_A 1ij1_A 1gcm_A 1rb5_A 1rb6_A 1rb1_A 1rb4_A 1swi_A 3k7z_A 1zii_A 1zij_A 1ij2_A 1ij3_A 1zil_A 1zim_A ...
Probab=47.47 E-value=27 Score=25.53 Aligned_cols=17 Identities=24% Similarity=0.012 Sum_probs=11.0
Q ss_pred HHHHHHHHHHHHHHhcc
Q 007579 513 NEALTAEVRRLKVATQE 529 (597)
Q Consensus 513 nEaLkeEVqrLK~a~gE 529 (597)
+..|..||.||+..+|+
T Consensus 16 ~~~le~EV~Rl~~ll~~ 32 (33)
T 2wq1_A 16 IYHNTNEIARNTKLVGE 32 (33)
T ss_dssp HHHHHHHHHHHHHHHCC
T ss_pred hHHHHHHHHHHHHHhcC
Confidence 34555677777777664
No 230
>3r84_A Mediator of RNA polymerase II transcription subun; four-helix bundle, nucleus; HET: MSE; 2.05A {Saccharomyces cerevisiae}
Probab=46.85 E-value=1.1e+02 Score=26.31 Aligned_cols=66 Identities=17% Similarity=0.226 Sum_probs=36.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhcc
Q 007579 457 ISELEHKVQTLQTEATTLSAQLTLLQRDSVGLTNQNNELKFRLQAMEQQ-AQLRDALNEALTAEVRRLKVATQE 529 (597)
Q Consensus 457 IeELE~KVq~LQtEN~tLsaQLtlLqre~~~L~aEN~ELK~RLqaLEqQ-aqLrdALnEaLkeEVqrLK~a~gE 529 (597)
+.+...++-.|-.+..+.-..++.+ ..-+..+|.+++.-..+ ..-++.+.-.|++||..|-..+|-
T Consensus 10 L~~ID~~i~sLL~~as~~i~tls~~-------k~~~~~~K~~F~~~t~~fy~tL~~v~v~LrkEIk~LdEnig~ 76 (86)
T 3r84_A 10 LNDIETQLCSMLQEASQVTFIFGEL-------KRGNESVKPQFENHVKQFYERLDKSTTQLRKEIQLLDENVGT 76 (86)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH-------HTTCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTBTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhcc-------cCCcHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCC
Confidence 3444444444444444433333332 22333455555443333 444556677899999999998885
No 231
>4fm3_A Uncharacterized hypothetical protein; PF14346 family protein, DUF4398, structural genomics, joint for structural genomics, JCSG; HET: PG4; 2.47A {Pseudomonas aeruginosa}
Probab=46.47 E-value=1.2e+02 Score=26.60 Aligned_cols=70 Identities=27% Similarity=0.266 Sum_probs=0.0
Q ss_pred CCCCcChHHHhhhcchHHHHhhhccCh--HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007579 407 GNGEFSGAELKKIMANEKLAEIALTDP--KRAKRILANRQSAARSKERKMRYISELEHKVQTLQTEATTLSAQLTLLQRD 484 (597)
Q Consensus 407 G~g~~s~~E~KKim~~ekLaElAl~Dp--KR~KRILaNRESAaRSReRKKqYIeELE~KVq~LQtEN~tLsaQLtlLqre 484 (597)
|..+|.. |++.+...=+.++.|+.|. +.+||+ .|-..+-++|...+..
T Consensus 23 ga~~~ap-El~~A~dKl~~A~~Am~~~~y~~Ar~l-----------------------------AEqAe~DArLAeAka~ 72 (98)
T 4fm3_A 23 GATDDVA-ELKLAQDKYAAAQIAMTAESYKKARLL-----------------------------AEQAELDARLAESKVL 72 (98)
T ss_dssp TCCTTSH-HHHHHHHHHHHHHHHHHTTCHHHHHHH-----------------------------HHHHHHHHHHHHHHHH
T ss_pred CcccccH-HHHHHHHHHHHHHHHHHcccHHHHHHH-----------------------------HHHHHHhHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 007579 485 SVGLTNQNNELKFRLQAMEQQA 506 (597)
Q Consensus 485 ~~~L~aEN~ELK~RLqaLEqQa 506 (597)
...-...+.+|+..|+.|.++.
T Consensus 73 ~~Ka~~~~~el~~~I~~LrqEl 94 (98)
T 4fm3_A 73 TQKSKDQLGELDKSLKRLRKQL 94 (98)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHh
No 232
>2j5u_A MREC protein; bacterial cell shape determining protein MREC, cell shape regulation; 2.5A {Listeria monocytogenes}
Probab=46.20 E-value=9.6 Score=37.42 Aligned_cols=9 Identities=44% Similarity=0.781 Sum_probs=3.6
Q ss_pred HHHHHHHHH
Q 007579 488 LTNQNNELK 496 (597)
Q Consensus 488 L~aEN~ELK 496 (597)
|..||..|+
T Consensus 48 l~~En~rLr 56 (255)
T 2j5u_A 48 LKKENKDLK 56 (255)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 333444443
No 233
>1gk4_A Vimentin; intermediate filament, dimer, parallel coiled coil, heptad repeat, stutter; 2.3A {Homo sapiens} SCOP: h.1.20.1
Probab=46.01 E-value=1.3e+02 Score=24.96 Aligned_cols=18 Identities=17% Similarity=0.156 Sum_probs=7.6
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 007579 482 QRDSVGLTNQNNELKFRL 499 (597)
Q Consensus 482 qre~~~L~aEN~ELK~RL 499 (597)
+.....|..+-..+|..+
T Consensus 32 q~~i~~lE~eL~~~r~e~ 49 (84)
T 1gk4_A 32 QDTIGRLQDEIQNMKEEM 49 (84)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 333334444444444444
No 234
>1ytz_T Troponin T; muscle, THIN filament, actin binding, calcium, contractIle protein; HET: DR6; 3.00A {Gallus gallus} SCOP: h.1.25.1 PDB: 1yv0_T 2w49_1 2w4u_1
Probab=45.45 E-value=1.6e+02 Score=26.00 Aligned_cols=46 Identities=22% Similarity=0.273 Sum_probs=24.6
Q ss_pred hHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007579 443 RQSAARSKERKMRYISELEH-------KVQTLQTEATTLSAQLTLLQRDSVGL 488 (597)
Q Consensus 443 RESAaRSReRKKqYIeELE~-------KVq~LQtEN~tLsaQLtlLqre~~~L 488 (597)
|-..+..|+.|++||.|--. -...|+.-+.+|...|..|+.+.-.|
T Consensus 16 ~~k~q~e~EeKkkiLaER~~pL~id~l~~~~L~e~~keLh~~I~~lEeEKYDl 68 (107)
T 1ytz_T 16 RGKKQTARETKKKVLAERRKPLNIDHLNEDKLRDKAKELWDWLYQLQTEKYDF 68 (107)
T ss_dssp HHHHHHHHHHHHHHHHHTCCCCCCSSSCSSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhhH
Confidence 33444556667888876210 12245556666666666555544333
No 235
>1m1j_A Fibrinogen alpha subunit; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: h.1.8.1 PDB: 1ei3_A
Probab=45.42 E-value=1.5e+02 Score=32.32 Aligned_cols=67 Identities=18% Similarity=0.208 Sum_probs=39.2
Q ss_pred HHHHHHHHhhHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007579 434 KRAKRILANRQSAARSKE-RKMRYISELEHKVQTLQTEATTLSAQLTLLQRDSVGLTNQNNELKFRLQAMEQQAQ 507 (597)
Q Consensus 434 KR~KRILaNRESAaRSRe-RKKqYIeELE~KVq~LQtEN~tLsaQLtlLqre~~~L~aEN~ELK~RLqaLEqQaq 507 (597)
+-.+.+|+.|+.-+.--+ +=.+|.++||+++..|+..+..-...|..|+.. .+.++.+|+.||....
T Consensus 89 ~~~~~~lk~~~~q~~dndn~~~e~S~eLe~ri~yIK~kVd~qi~~IrvLq~~-------l~~q~skIQRLE~dI~ 156 (491)
T 1m1j_A 89 VETINILKPGLEGAQQLDENYGHVSTELRRRIVTLKQRVATQVNRIKALQNS-------IQEQVVEMKRLEVDID 156 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHH
Confidence 344445555554443333 335788888888888877665544666665554 4445555666655533
No 236
>1p9i_A Cortexillin I/GCN4 hybrid peptide; coiled-coil, unknown function; 1.17A {Synthetic} SCOP: h.1.10.1
Probab=45.38 E-value=19 Score=25.55 Aligned_cols=17 Identities=24% Similarity=0.511 Sum_probs=9.1
Q ss_pred HHHHHHHHHHHHHHHHH
Q 007579 486 VGLTNQNNELKFRLQAM 502 (597)
Q Consensus 486 ~~L~aEN~ELK~RLqaL 502 (597)
..|++||++||.++++|
T Consensus 9 asleaenkqlkakveel 25 (31)
T 1p9i_A 9 ASLEAENKQLKAKVEEL 25 (31)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34555566655555444
No 237
>3gp4_A Transcriptional regulator, MERR family; structural genomics, DNA-BI transcription regulator, PSI-2; 1.85A {Listeria monocytogenes str}
Probab=45.35 E-value=1.7e+02 Score=26.09 Aligned_cols=33 Identities=15% Similarity=0.127 Sum_probs=17.5
Q ss_pred CcChHHHhhhcchHHHHhhhccChHHHHHHHHhh
Q 007579 410 EFSGAELKKIMANEKLAEIALTDPKRAKRILANR 443 (597)
Q Consensus 410 ~~s~~E~KKim~~ekLaElAl~DpKR~KRILaNR 443 (597)
.|+..+..++.-=-.|.++ -.--+.+|+++...
T Consensus 40 ~Y~~~dl~~l~~I~~lr~~-G~sL~eIk~~l~~~ 72 (142)
T 3gp4_A 40 KFGAEDLRWILFTRQMRRA-GLSIEALIDYLALF 72 (142)
T ss_dssp CBCHHHHHHHHHHHHHHHT-TCCHHHHHHHHHHH
T ss_pred eeCHHHHHHHHHHHHHHHc-CCCHHHHHHHHHHH
Confidence 4666666655444444433 23456667766543
No 238
>2ve7_A Kinetochore protein HEC1, kinetochore protein SPC; mitosis, centromere, cell cycle, microtubule, C division, calponin homology; 2.88A {Homo sapiens} PDB: 3iz0_C*
Probab=45.26 E-value=27 Score=35.32 Aligned_cols=30 Identities=17% Similarity=0.359 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007579 461 EHKVQTLQTEATTLSAQLTLLQRDSVGLTN 490 (597)
Q Consensus 461 E~KVq~LQtEN~tLsaQLtlLqre~~~L~a 490 (597)
+.+++.|+.++..|.++++.|++....+..
T Consensus 184 ~~eie~L~~~~~~L~eEi~~Le~~~e~~~k 213 (315)
T 2ve7_A 184 AFKLESLEAKNRALNEQIARLEQERSTANK 213 (315)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 334555555555555555555554444444
No 239
>1kd8_B GABH BLL, GCN4 acid base heterodimer base-D12LA16L; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kd9_B 1kdd_B
Probab=45.17 E-value=27 Score=25.98 Aligned_cols=14 Identities=36% Similarity=0.408 Sum_probs=7.2
Q ss_pred HHHHHHHHHHHHhc
Q 007579 515 ALTAEVRRLKVATQ 528 (597)
Q Consensus 515 aLkeEVqrLK~a~g 528 (597)
.|..||.|||..++
T Consensus 19 ~Le~eV~RLk~ll~ 32 (36)
T 1kd8_B 19 HLKNKVARLKKKNA 32 (36)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhc
Confidence 34445555555544
No 240
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A
Probab=45.05 E-value=1.6e+02 Score=25.94 Aligned_cols=42 Identities=21% Similarity=0.364 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007579 482 QRDSVGLTNQNNELKFRLQAMEQQAQLRDALNEALTAEVRRL 523 (597)
Q Consensus 482 qre~~~L~aEN~ELK~RLqaLEqQaqLrdALnEaLkeEVqrL 523 (597)
+..+..|.....+|..+|..|+.++.--...+..|.++-..|
T Consensus 68 EE~~~~L~~~k~eLe~~l~el~~rleeeee~~~~L~~~kkkl 109 (129)
T 2fxo_A 68 EERCDQLIKNKIQLEAKVKEMNKRLEDEEEMNAELTAKKRKL 109 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444444444333333344444443333
No 241
>4dk0_A Putative MACA; alpha-hairpin, lipoyl, beta-barrel, periplasmic protein, MEM protein; 3.50A {Aggregatibacter actinomycetemcomitans} PDB: 4dk1_A
Probab=44.70 E-value=1.1e+02 Score=29.79 Aligned_cols=15 Identities=13% Similarity=0.038 Sum_probs=7.1
Q ss_pred HHHHHHHHHHHHHHh
Q 007579 513 NEALTAEVRRLKVAT 527 (597)
Q Consensus 513 nEaLkeEVqrLK~a~ 527 (597)
.+.++.+++.++..+
T Consensus 138 l~~~~~~l~~a~~~l 152 (369)
T 4dk0_A 138 IKQAEIEVNTAETNL 152 (369)
T ss_dssp HHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHh
Confidence 334444555555444
No 242
>2fic_A Bridging integrator 1; BAR domain, homodimer, coiled-coils, endocytosis/exocytosis, protein complex, endocytosis-exocytosis; 1.99A {Homo sapiens} PDB: 2rmy_A 2rnd_A
Probab=44.67 E-value=2e+02 Score=26.91 Aligned_cols=26 Identities=19% Similarity=0.141 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007579 474 LSAQLTLLQRDSVGLTNQNNELKFRLQAM 502 (597)
Q Consensus 474 LsaQLtlLqre~~~L~aEN~ELK~RLqaL 502 (597)
...++...++++.. -|..|+..|..+
T Consensus 184 ae~el~~ak~~ye~---ln~~L~~eLp~l 209 (251)
T 2fic_A 184 AEEELIKAQKVFEE---MNVDLQEELPSL 209 (251)
T ss_dssp HHHHHHHHHHHHHH---HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH---HHHHHHHHHHHH
Confidence 33344444444333 356666666555
No 243
>1uo4_A General control protein GCN4; four helix bundle, cavity, iodobenzene; 1.70A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1uo3_A 1unt_A 1uo5_A 1unu_A 1unv_A 1uo1_A 2ccf_A 2cce_A 1unx_A 1unw_A 1w5j_A* 1w5k_A* 1u9f_A* 3f86_A* 3f87_A* 3hez_A* 3c3f_A*
Probab=44.62 E-value=29 Score=25.56 Aligned_cols=16 Identities=19% Similarity=0.131 Sum_probs=9.9
Q ss_pred HHHHHHHHHHHHHHhc
Q 007579 513 NEALTAEVRRLKVATQ 528 (597)
Q Consensus 513 nEaLkeEVqrLK~a~g 528 (597)
+..|..||.|||..++
T Consensus 17 n~~Le~EV~RLk~LL~ 32 (34)
T 1uo4_A 17 LYHIENELARIKKLLG 32 (34)
T ss_dssp HHHHHHHHHHHHHHTT
T ss_pred hHHHHHHHHHHHHHHc
Confidence 4445567777776655
No 244
>2odv_A Plectin 1, HD1; plakin domain, spectrin repeat, cytoskeleton, hemidesmosomes epidermolysis bullosa, structural protein; 2.05A {Homo sapiens} PDB: 2odu_A
Probab=44.49 E-value=1.1e+02 Score=29.76 Aligned_cols=35 Identities=14% Similarity=0.168 Sum_probs=26.2
Q ss_pred hHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 007579 433 PKRAKRILANRQSAARSKERKMRYISELEHKVQTL 467 (597)
Q Consensus 433 pKR~KRILaNRESAaRSReRKKqYIeELE~KVq~L 467 (597)
..+.-+-...|+.|.+.-.++++.++.|-.+++.-
T Consensus 102 W~~Le~ae~eRe~aL~~el~RlerLe~La~kf~rk 136 (235)
T 2odv_A 102 WGKLHVAILEREKQLRSEFERLEALQRIVTKLQME 136 (235)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666677889999999988887777776666543
No 245
>2xu6_A MDV1 coiled coil; protein binding, mitochondrial outer membrane, adapter prote organelle division; 2.70A {Saccharomyces cerevisiae}
Probab=43.95 E-value=44 Score=28.08 Aligned_cols=43 Identities=19% Similarity=0.380 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007579 457 ISELEHKVQTLQTEATTLSAQLTLLQRDSVGLTNQNNELKFRL 499 (597)
Q Consensus 457 IeELE~KVq~LQtEN~tLsaQLtlLqre~~~L~aEN~ELK~RL 499 (597)
|.|+..|++.|..--..+..+|+.|+++-..|+.+-.+++.||
T Consensus 23 I~EID~Ki~nL~~mR~ivldRlA~lEqdE~~LE~~l~~i~~rl 65 (72)
T 2xu6_A 23 IRDIEVEVENLRQKKEKLLGKIANIEQNQLMLEDNLKQIDDRL 65 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 3344444444444444444444444444444444444444443
No 246
>1hlo_A Protein (transcription factor MAX); transcriptional regulation, DNA binding, complex (transcription factor MAX/DNA), transcription/DNA complex; HET: DNA; 2.80A {Homo sapiens} SCOP: a.38.1.1
Probab=43.87 E-value=18 Score=29.54 Aligned_cols=22 Identities=27% Similarity=0.371 Sum_probs=11.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 007579 454 MRYISELEHKVQTLQTEATTLS 475 (597)
Q Consensus 454 KqYIeELE~KVq~LQtEN~tLs 475 (597)
..||..|+.+++.|+.++..|.
T Consensus 56 i~YI~~L~~~~~~L~~e~~~L~ 77 (80)
T 1hlo_A 56 TEYIQYMRRKNHTHQQDIDDLK 77 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHHTHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555555555544444444
No 247
>3e98_A GAF domain of unknown function; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 2.43A {Pseudomonas aeruginosa}
Probab=43.71 E-value=72 Score=31.21 Aligned_cols=47 Identities=17% Similarity=0.253 Sum_probs=34.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007579 457 ISELEHKVQTLQTEATTLSAQLTLLQRDSVGLTNQNNELKFRLQAMEQQAQ 507 (597)
Q Consensus 457 IeELE~KVq~LQtEN~tLsaQLtlLqre~~~L~aEN~ELK~RLqaLEqQaq 507 (597)
|.=.|++++.|..+|..|..+++.|. ....+|..+-.++..++.++.
T Consensus 67 VSL~erQ~~~LR~r~~~Le~~L~~Li----~~A~~Ne~l~~~~~~l~l~LL 113 (252)
T 3e98_A 67 VSLVERQVRLLRERNIEMRHRLSQLM----DVARENDRLFDKTRRLVLDLL 113 (252)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHh
Confidence 45667777778778888887776654 356788888888888866544
No 248
>3q0x_A Centriole protein; centrosome protein, coiled coil mediated dimer, structural P; 3.02A {Chlamydomonas reinhardtii}
Probab=43.20 E-value=94 Score=30.72 Aligned_cols=42 Identities=17% Similarity=0.127 Sum_probs=26.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007579 465 QTLQTEATTLSAQLTLLQRDSVGLTNQNNELKFRLQAMEQQA 506 (597)
Q Consensus 465 q~LQtEN~tLsaQLtlLqre~~~L~aEN~ELK~RLqaLEqQa 506 (597)
+.|....+.+++++..|++....+..|++.+..+|+...+++
T Consensus 167 ~yLa~R~~~lK~kl~~l~~~L~~~~~e~~s~~~~~~~~~~~~ 208 (228)
T 3q0x_A 167 QFLAFRLSEVKGTCHDLSDDLSRTRDDRDSMVAQLAQCRQQL 208 (228)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445555666666666666667777777777777666553
No 249
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=43.03 E-value=33 Score=36.11 Aligned_cols=55 Identities=18% Similarity=0.223 Sum_probs=28.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007579 464 VQTLQTEATTLSAQLTLLQRDSVGLTNQNNELKFRLQAMEQQAQLRDALNEALTAEVRRLKV 525 (597)
Q Consensus 464 Vq~LQtEN~tLsaQLtlLqre~~~L~aEN~ELK~RLqaLEqQaqLrdALnEaLkeEVqrLK~ 525 (597)
...|...+.+|..++..|++++.-|..|+..|+.++..+..+ .+.+++|+.+|+.
T Consensus 37 ~~~l~~~~~dl~~~lk~le~~~~~L~~e~e~l~~~~~~~~~e-------~~~~~ee~~~l~~ 91 (428)
T 4b4t_K 37 NSALSNVNSDIYFKLKKLEKEYELLTLQEDYIKDEQRHLKRE-------LKRAQEEVKRIQS 91 (428)
T ss_dssp -----------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHTC
T ss_pred hhhcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHcC
Confidence 335555666677777777777777777777777666555333 2346667777764
No 250
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=42.84 E-value=37 Score=35.73 Aligned_cols=29 Identities=21% Similarity=0.296 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007579 457 ISELEHKVQTLQTEATTLSAQLTLLQRDS 485 (597)
Q Consensus 457 IeELE~KVq~LQtEN~tLsaQLtlLqre~ 485 (597)
..+|..+++.|+.+...|..+...++.+.
T Consensus 44 ~~dl~~~lk~le~~~~~L~~e~e~l~~~~ 72 (428)
T 4b4t_K 44 NSDIYFKLKKLEKEYELLTLQEDYIKDEQ 72 (428)
T ss_dssp ----CHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555555555555555555544444433
No 251
>2xnx_M M protein, M1-BC1; cell adhesion, virulence factor, streptococcal toxic shock S; 3.30A {Streptococcus pyogenes}
Probab=42.15 E-value=1.7e+02 Score=27.47 Aligned_cols=58 Identities=22% Similarity=0.186 Sum_probs=29.3
Q ss_pred HHHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007579 459 ELEHKVQTLQTEATTLSAQL------------TLLQRDSVGLTNQNNELKFRLQAMEQQAQLRDALNEALTAEVRRL 523 (597)
Q Consensus 459 ELE~KVq~LQtEN~tLsaQL------------tlLqre~~~L~aEN~ELK~RLqaLEqQaqLrdALnEaLkeEVqrL 523 (597)
+||.+.+.|..+...+.+.. ..|.++..........++..|+.++.. ...|.+|.+.|
T Consensus 37 ~le~e~~kl~~e~~i~eas~~~~~~~~le~~~~~l~rdleasr~akk~~ea~la~l~~~-------~~~LeAE~aKL 106 (146)
T 2xnx_M 37 EKELEEKKKALELAIDQASQDYNRANVLEKELEAITREQEINRNLLGNAKLELDQLSSE-------KEQLTIEKAKL 106 (146)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTTTHHHHTTTTTTHHHHHHTTHHHHHHHHHHHHHHHHH-------HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhhhhhhhhhHhhHHHHHHHHHHHHHHHHhHHHHHHHHHhh-------HHHHHHHHHHH
Confidence 44555555555555444443 455555555555555555555554333 33455555554
No 252
>2b9c_A Striated-muscle alpha tropomyosin; alpha-helix, coiled coil, alanine, axial stagger, radius, SIDE-chain packing, crystal packing; 2.30A {Rattus norvegicus} SCOP: h.1.5.1
Probab=42.13 E-value=2.1e+02 Score=26.30 Aligned_cols=48 Identities=13% Similarity=0.241 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007579 457 ISELEHKVQTLQTEATTLSAQLTLLQRDSVGLTNQNNELKFRLQAMEQ 504 (597)
Q Consensus 457 IeELE~KVq~LQtEN~tLsaQLtlLqre~~~L~aEN~ELK~RLqaLEq 504 (597)
.++..+|+..++.+......++..++..+..|..+.+.+-..|..|+.
T Consensus 75 yeE~~RKl~~~E~dLeraeeRae~aE~k~~eLEeeL~~~~~nlKsLE~ 122 (147)
T 2b9c_A 75 YEEVARKLVIIESDLERAEERAELSEGKCAELEEELKTVTNNLKSLED 122 (147)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHH
Confidence 445555555555555555555555555555555555555555555543
No 253
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=42.13 E-value=3.3e+02 Score=29.89 Aligned_cols=14 Identities=29% Similarity=0.615 Sum_probs=7.6
Q ss_pred cchhhHHHHHHhcc
Q 007579 260 EGEVVDDLFSAYMN 273 (597)
Q Consensus 260 ~~e~~ddlf~~Ymn 273 (597)
.+..+-.++..|++
T Consensus 289 tG~~L~~l~~~yv~ 302 (592)
T 1f5n_A 289 NGPRLESLVLTYVN 302 (592)
T ss_dssp BHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHH
Confidence 44455556666654
No 254
>1nlw_A MAD protein, MAX dimerizer; transcription factor, DNA, BHLHZ, transcription/DNA complex; 2.00A {Homo sapiens} SCOP: a.38.1.1
Probab=42.02 E-value=48 Score=27.52 Aligned_cols=27 Identities=19% Similarity=0.119 Sum_probs=12.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007579 474 LSAQLTLLQRDSVGLTNQNNELKFRLQ 500 (597)
Q Consensus 474 LsaQLtlLqre~~~L~aEN~ELK~RLq 500 (597)
|..+...++.+...|..+|.+|+.+|+
T Consensus 52 L~~~~~~l~~e~~~L~~e~~~L~~~L~ 78 (80)
T 1nlw_A 52 LEDSDRKAVHQIDQLQREQRHLKRQLE 78 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 333333333344444445555555543
No 255
>3vp9_A General transcriptional corepressor TUP1; four helix bundle; 1.80A {Saccharomyces cerevisiae} PDB: 3vp8_A
Probab=41.63 E-value=46 Score=29.02 Aligned_cols=15 Identities=27% Similarity=0.554 Sum_probs=10.0
Q ss_pred HHHHHHHHHHHHHhc
Q 007579 514 EALTAEVRRLKVATQ 528 (597)
Q Consensus 514 EaLkeEVqrLK~a~g 528 (597)
+...+||.+||.-+-
T Consensus 71 q~YEeEI~rLr~eLe 85 (92)
T 3vp9_A 71 DAYEEEIKHLKLGLE 85 (92)
T ss_dssp HHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHH
Confidence 344568888887664
No 256
>1fxk_C Protein (prefoldin); archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1
Probab=41.20 E-value=80 Score=27.39 Aligned_cols=10 Identities=20% Similarity=0.338 Sum_probs=6.1
Q ss_pred cccccCCCCc
Q 007579 402 FSLEFGNGEF 411 (597)
Q Consensus 402 ~~~efG~g~~ 411 (597)
+-+.+|.|-|
T Consensus 72 V~v~lG~g~~ 81 (133)
T 1fxk_C 72 VIMSVGAGVA 81 (133)
T ss_dssp EEEEEETTEE
T ss_pred EEEEcCCCEE
Confidence 4456777755
No 257
>3fpp_A Macrolide-specific efflux protein MACA; hexameric assembly, membrane fusion protein, drug efflux pump, periplasmic protein; 2.99A {Escherichia coli}
Probab=40.98 E-value=1.7e+02 Score=28.17 Aligned_cols=13 Identities=15% Similarity=0.335 Sum_probs=5.4
Q ss_pred HHHHHHHHHHHHH
Q 007579 513 NEALTAEVRRLKV 525 (597)
Q Consensus 513 nEaLkeEVqrLK~ 525 (597)
.+.+++++..++.
T Consensus 130 l~~~~a~l~~a~a 142 (341)
T 3fpp_A 130 IGTIDAQIKRNQA 142 (341)
T ss_dssp HHHHHHHHHHTHH
T ss_pred HHHHHHHHHHHHH
Confidence 3344444444443
No 258
>3he4_A Synzip6; heterodimeric coiled-coil, de novo protein; 2.46A {Artificial gene}
Probab=40.94 E-value=35 Score=26.88 Aligned_cols=33 Identities=24% Similarity=0.402 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007579 457 ISELEHKVQTLQTEATTLSAQLTLLQRDSVGLT 489 (597)
Q Consensus 457 IeELE~KVq~LQtEN~tLsaQLtlLqre~~~L~ 489 (597)
-..||.-|..|+..|+.|...+..|+++...|+
T Consensus 19 naklenivarlendnanlekdianlekdianle 51 (56)
T 3he4_A 19 NAKLENIVARLENDNANLEKDIANLEKDIANLE 51 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHhcccchHHHHHHHHHHHHHHHH
Confidence 345677777777777777777777766655554
No 259
>2i1j_A Moesin; FERM, coiled-coil, C-ermad, ERM, radixin, ezrin, MER actin binding, masking, regulation, SELF-inhibition, cell A membrane protein; 2.10A {Spodoptera frugiperda} PDB: 2i1k_A 1e5w_A
Probab=39.87 E-value=41 Score=36.62 Aligned_cols=40 Identities=23% Similarity=0.238 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007579 457 ISELEHKVQTLQTEATTLSAQLTLLQRDSVGLTNQNNELK 496 (597)
Q Consensus 457 IeELE~KVq~LQtEN~tLsaQLtlLqre~~~L~aEN~ELK 496 (597)
..+||.++..++.|.......|...++....|..+.+...
T Consensus 337 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~e~~~~~~ 376 (575)
T 2i1j_A 337 QQEYQDRLRQMQEEMERSQANLLEAQDMILRLEEQLRQLQ 376 (575)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHC------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 4677777777777777666666555554444444443333
No 260
>3ra3_B P2F; coiled coil domain, fiber, KIH interactions, synthetic biolo helical reconstruction, de novo protein; HET: PHI; 2.31A {Synthetic}
Probab=39.62 E-value=29 Score=24.15 Aligned_cols=17 Identities=18% Similarity=0.364 Sum_probs=7.4
Q ss_pred HHHHHHHHHHHHHHHHH
Q 007579 467 LQTEATTLSAQLTLLQR 483 (597)
Q Consensus 467 LQtEN~tLsaQLtlLqr 483 (597)
|...|+.|+.+++.|+-
T Consensus 5 lkqknarlkqeiaaley 21 (28)
T 3ra3_B 5 LKQKNARLKQEIAALEY 21 (28)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHhhhHHHHHHHHHHH
Confidence 34444444444444443
No 261
>2zvf_A Alanyl-tRNA synthetase; C-terminal, oligomerization domain, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase, nucleotide-binding; 3.20A {Archaeoglobus fulgidus}
Probab=39.43 E-value=73 Score=28.39 Aligned_cols=23 Identities=17% Similarity=0.200 Sum_probs=8.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 007579 459 ELEHKVQTLQTEATTLSAQLTLL 481 (597)
Q Consensus 459 ELE~KVq~LQtEN~tLsaQLtlL 481 (597)
+|..+|+.|+.|+..|..++..|
T Consensus 29 ~l~~~v~~l~~e~k~l~ke~~~l 51 (171)
T 2zvf_A 29 KLPKTVERFFEEWKDQRKEIERL 51 (171)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333333
No 262
>1p9i_A Cortexillin I/GCN4 hybrid peptide; coiled-coil, unknown function; 1.17A {Synthetic} SCOP: h.1.10.1
Probab=39.38 E-value=27 Score=24.83 Aligned_cols=25 Identities=24% Similarity=0.352 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 007579 458 SELEHKVQTLQTEATTLSAQLTLLQ 482 (597)
Q Consensus 458 eELE~KVq~LQtEN~tLsaQLtlLq 482 (597)
+.|-.-+..|+.||..|++++++|-
T Consensus 2 dqlnallasleaenkqlkakveell 26 (31)
T 1p9i_A 2 DQLNALLASLEAENKQLKAKVEELL 26 (31)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455556677777777777777654
No 263
>2ve7_C Kinetochore protein NUF2, kinetochore protein SPC; mitosis, centromere, cell cycle, microtubule, C division, calponin homology; 2.88A {Homo sapiens} PDB: 3iz0_D*
Probab=39.21 E-value=12 Score=36.97 Aligned_cols=47 Identities=15% Similarity=0.114 Sum_probs=27.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007579 443 RQSAARSKERKMRYISELEHKVQTLQTEATTLSAQLTLLQRDSVGLT 489 (597)
Q Consensus 443 RESAaRSReRKKqYIeELE~KVq~LQtEN~tLsaQLtlLqre~~~L~ 489 (597)
|+...--=+...+..+++..+++.|+.||..|.++|..|+++....+
T Consensus 136 RE~~~~~~~e~~~~~e~~~~~i~ql~~En~~le~~Ie~Lk~e~~e~~ 182 (250)
T 2ve7_C 136 REACRETYMEFLWQYKSSADKMQQLNAAHQEALMKLERLEKEVDEDT 182 (250)
T ss_dssp HHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHSCC----------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 44444444566667788888999999998888888877776644433
No 264
>1h7c_A Tubulin-specific chaperone A; protein folding, cofactor A; 1.8A {Homo sapiens} SCOP: a.7.5.1
Probab=38.86 E-value=1.7e+02 Score=25.56 Aligned_cols=34 Identities=12% Similarity=0.138 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 007579 494 ELKFRLQAMEQQAQLRDALNEALTAEVRRLKVAT 527 (597)
Q Consensus 494 ELK~RLqaLEqQaqLrdALnEaLkeEVqrLK~a~ 527 (597)
.||.+.+.|+.-..+.......|.+.+..|...+
T Consensus 49 ~iKkq~evl~Et~~mipd~~~Rl~~a~~~L~~~l 82 (108)
T 1h7c_A 49 DIKKQAEILQESRMMIPDCQRRLEAAYLDLQRIL 82 (108)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHH
Confidence 4555555555444444444555555555555544
No 265
>3c9i_A Tail needle protein GP26; xenon, coiled-coil, protein fiber, coiled coil, late protein, viral protein; 1.95A {Bacteriophage P22} PDB: 2poh_A
Probab=38.81 E-value=2.7e+02 Score=27.78 Aligned_cols=49 Identities=14% Similarity=0.186 Sum_probs=25.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007579 458 SELEHKVQTLQTEATTLSAQLTLLQRDSVGLTNQNNELKFRLQAMEQQA 506 (597)
Q Consensus 458 eELE~KVq~LQtEN~tLsaQLtlLqre~~~L~aEN~ELK~RLqaLEqQa 506 (597)
..+|.+|...+..++.-...|..++-..+..+.+-..|+.+++.|+.++
T Consensus 87 ~a~~a~l~dHE~RIt~~~~~ia~~e~Rit~~e~~i~~l~~~v~~ld~~v 135 (242)
T 3c9i_A 87 KQLRIDVDDHESRITANTKAITALNVRVTTAEGEIASLQTNVSALDGRV 135 (242)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhcccccHHHHhhhhhhhhhhhhheeecccccchhhhhhhhhhcccc
Confidence 3344444444444444444555555555555555566666666665554
No 266
>3oa7_A Head morphogenesis protein, chaotic nuclear migra protein 67 fusion protein; coiled coils, structural protein, spindle POLE BODY; 2.30A {Bacillus phage PHI29}
Probab=38.77 E-value=91 Score=30.64 Aligned_cols=42 Identities=17% Similarity=0.292 Sum_probs=29.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007579 464 VQTLQTEATTLSAQLTLLQRDSVGLTNQNNELKFRLQAMEQQ 505 (597)
Q Consensus 464 Vq~LQtEN~tLsaQLtlLqre~~~L~aEN~ELK~RLqaLEqQ 505 (597)
+++|+.+..+.-.+-..|+..+..|.+|+..|+.+|..|+..
T Consensus 32 ~~~~~a~~~s~~s~~~dl~~s~~~l~ae~~~L~~~l~kLeGn 73 (206)
T 3oa7_A 32 LQQLRVNYGSFVSEYNDLTKSHNTLSKELDNLRSRFGNLEGN 73 (206)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHccCC
Confidence 344444445555555566666777889999999999988754
No 267
>1lrz_A FEMA, factor essential for expression of methicillin resistance; peptidoglycan, X-RAY crystallography, multiple anomalous dispersion; 2.10A {Staphylococcus aureus} SCOP: a.2.7.4 d.108.1.4 d.108.1.4
Probab=38.48 E-value=84 Score=32.11 Aligned_cols=24 Identities=21% Similarity=0.385 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 007579 455 RYISELEHKVQTLQTEATTLSAQL 478 (597)
Q Consensus 455 qYIeELE~KVq~LQtEN~tLsaQL 478 (597)
+|+++|+.+++.|+.+...|..++
T Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~ 270 (426)
T 1lrz_A 247 EYIKELNEERDILNKDLNKALKDI 270 (426)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 467777777777777777776665
No 268
>3viq_B Mating-type switching protein SWI5; recombination activator; 2.20A {Schizosaccharomyces pombe} PDB: 3vir_A*
Probab=37.89 E-value=1.7e+02 Score=25.14 Aligned_cols=23 Identities=26% Similarity=0.382 Sum_probs=10.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 007579 459 ELEHKVQTLQTEATTLSAQLTLL 481 (597)
Q Consensus 459 ELE~KVq~LQtEN~tLsaQLtlL 481 (597)
.|+.+++.|+.+...|..++..+
T Consensus 5 ~L~~~i~~L~~q~~~L~~ei~~~ 27 (85)
T 3viq_B 5 QLESRVHLLEQQKEQLESSLQDA 27 (85)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444
No 269
>2p22_C Protein SRN2; endosome, trafficking complex, VPS23, VPS28, VPS37, MVB12; 2.70A {Saccharomyces cerevisiae} PDB: 2caz_C 2f66_C
Probab=36.72 E-value=2.9e+02 Score=26.39 Aligned_cols=79 Identities=11% Similarity=0.172 Sum_probs=37.2
Q ss_pred ccccccCCCCcChHHHhhhcchH--HHHhhhc-cChHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007579 401 AFSLEFGNGEFSGAELKKIMANE--KLAEIAL-TDPKRAKRILANRQSAARSKERKMRYISELEHKVQTLQTEATTLSAQ 477 (597)
Q Consensus 401 ~~~~efG~g~~s~~E~KKim~~e--kLaElAl-~DpKR~KRILaNRESAaRSReRKKqYIeELE~KVq~LQtEN~tLsaQ 477 (597)
.|.+-.+--..+-.|.+.+..++ .|..++. .++ ++-+...++.. .-..+.+.+|+.++..+......+..+
T Consensus 28 ~~~LP~~L~~LS~~eL~~LL~~~~dlL~~~v~~l~~--~q~~~~~~e~l----~s~ae~ll~l~~~Le~~r~~l~~~l~~ 101 (192)
T 2p22_C 28 NIPLPEGINLLSSKEIIDLIQTHRHQLELYVTKFNP--LTDFAGKIHAF----RDQFKQLEENFEDLHEQKDKVQALLEN 101 (192)
T ss_dssp CCCCSSGGGSCTTHHHHHHHHHCHHHHHHHGGGGSC--CHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHhCCHHHHHHHHhChHHHHHHHHHhchh--HHHHHHHHHHH----HHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 44444444445556777777764 4444432 121 33333334443 222233345555555555555555555
Q ss_pred HHHHHHHH
Q 007579 478 LTLLQRDS 485 (597)
Q Consensus 478 LtlLqre~ 485 (597)
+..|+.++
T Consensus 102 ~~~L~~~~ 109 (192)
T 2p22_C 102 ARILESKY 109 (192)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 55555444
No 270
>2r2v_A GCN4 leucine zipper; coiled coils, anti-parallel tetramer, protein design, de novo protein; HET: CIT; 1.90A {Saccharomyces cerevisiae} SCOP: h.1.3.1
Probab=36.50 E-value=48 Score=24.44 Aligned_cols=17 Identities=18% Similarity=0.005 Sum_probs=10.3
Q ss_pred HHHHHHHHHHHHHHhcc
Q 007579 513 NEALTAEVRRLKVATQE 529 (597)
Q Consensus 513 nEaLkeEVqrLK~a~gE 529 (597)
+..|..||.||+..+|+
T Consensus 17 ~~~l~nEv~Rl~~lLg~ 33 (34)
T 2r2v_A 17 LYHNANELARVAKLLGE 33 (34)
T ss_dssp HHHHHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHHHhcC
Confidence 33455577777776664
No 271
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=36.44 E-value=26 Score=36.94 Aligned_cols=11 Identities=18% Similarity=0.383 Sum_probs=0.4
Q ss_pred HHHHHHHHHHH
Q 007579 461 EHKVQTLQTEA 471 (597)
Q Consensus 461 E~KVq~LQtEN 471 (597)
+.+++.|+.|.
T Consensus 31 ~~r~~~le~e~ 41 (434)
T 4b4t_M 31 QTRAKLLDNEI 41 (434)
T ss_dssp ----------C
T ss_pred HHHHHHHHHHH
Confidence 33333333333
No 272
>3m0a_A TNF receptor-associated factor 2; TRAF2: CIAP2 and the TRAF1: TRAF2: CIAP2 complexes, apoptosi coil, cytoplasm, metal-binding; 2.61A {Homo sapiens} PDB: 3m0d_A 3m06_A
Probab=36.30 E-value=1.5e+02 Score=23.09 Aligned_cols=30 Identities=27% Similarity=0.361 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007579 497 FRLQAMEQQAQLRDALNEALTAEVRRLKVA 526 (597)
Q Consensus 497 ~RLqaLEqQaqLrdALnEaLkeEVqrLK~a 526 (597)
.++.++.++..+-....+.|+..+.+|...
T Consensus 33 ~~le~~~~q~~~~~~~i~~Le~k~~~l~~~ 62 (66)
T 3m0a_A 33 MTAEACSRQHRLDQDKIEALSSKVQQLERS 62 (66)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhhhHHHhHHHHHHHHHHHHHHH
Confidence 334444444444444455555555555443
No 273
>4fla_A Regulation of nuclear PRE-mRNA domain-containing 1B; structural genomics consortium, SGC, transcription; 2.20A {Homo sapiens}
Probab=36.27 E-value=2.6e+02 Score=25.79 Aligned_cols=62 Identities=13% Similarity=0.056 Sum_probs=32.3
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007579 441 ANRQSAARSKERKMRYISELEHKVQTLQTEATTLSAQLTLLQRDSVGLTNQNNELKFRLQAM 502 (597)
Q Consensus 441 aNRESAaRSReRKKqYIeELE~KVq~LQtEN~tLsaQLtlLqre~~~L~aEN~ELK~RLqaL 502 (597)
+.|+++.+--+.=.+...-|+.-++.|+.|...-..=+..|+.-.........+.+.++.+-
T Consensus 65 kDk~~~e~l~~~veeA~~~L~eYn~rL~~E~~dR~~L~~~L~~~~~~~~~~l~e~e~~leey 126 (152)
T 4fla_A 65 TDKEAAERLSKTVDEACLLLAEYNGRLAAELEDRRQLARMLVEYTQNQKDVLSEKEKKLEEY 126 (152)
T ss_dssp CSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34565555555445555556666666666655544444444444444444444445555444
No 274
>1kd8_A GABH AIV, GCN4 acid base heterodimer acid-D12IA16V; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kdd_A 1kd9_A
Probab=36.20 E-value=32 Score=25.57 Aligned_cols=13 Identities=38% Similarity=0.475 Sum_probs=6.0
Q ss_pred HHHHHHHHHHHhc
Q 007579 516 LTAEVRRLKVATQ 528 (597)
Q Consensus 516 LkeEVqrLK~a~g 528 (597)
|..||.||+..++
T Consensus 20 Le~EV~RL~~ll~ 32 (36)
T 1kd8_A 20 LENEVARLEKENA 32 (36)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhc
Confidence 3345555554443
No 275
>1joc_A EEA1, early endosomal autoantigen 1; FYVE domain, inositol 3-phosphate binding, membrane protein; HET: ITP; 2.20A {Homo sapiens} SCOP: g.50.1.1 h.1.21.1 PDB: 1hyi_A* 1hyj_A
Probab=35.76 E-value=1.8e+02 Score=25.60 Aligned_cols=18 Identities=28% Similarity=0.320 Sum_probs=8.2
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 007579 468 QTEATTLSAQLTLLQRDS 485 (597)
Q Consensus 468 QtEN~tLsaQLtlLqre~ 485 (597)
+.|...|+.++.+|++.+
T Consensus 17 e~e~~~l~~~~~el~~~l 34 (125)
T 1joc_A 17 EGEIEKLQTKVLELQRKL 34 (125)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HhhHHHHHHHHHHHHHHH
Confidence 334444444444444443
No 276
>3plt_A Sphingolipid long chain base-responsive protein L; eisosomes, LSP1, PIL1, BAR domain, plasma membrane, SELF-ASS phosphoprotein; 2.90A {Saccharomyces cerevisiae}
Probab=35.49 E-value=1.5e+02 Score=29.61 Aligned_cols=91 Identities=19% Similarity=0.208 Sum_probs=0.0
Q ss_pred HhhhccChHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHH
Q 007579 426 AEIALTDPKRAKRILANRQSAARSKERKMRYISELEHKVQTLQTEATTLSAQLTLLQRD--SVGLTNQNNELKFRLQAME 503 (597)
Q Consensus 426 aElAl~DpKR~KRILaNRESAaRSReRKKqYIeELE~KVq~LQtEN~tLsaQLtlLqre--~~~L~aEN~ELK~RLqaLE 503 (597)
.|-....-|+.|+.|..+......|.=--..|..||.++..++.++....++|..+.|+ ...+..+-..|..+-+.+.
T Consensus 102 ~E~svqp~R~~R~~l~~~I~kLk~k~P~s~kl~~LeqELvraEae~lvaEAqL~n~kR~~lKEa~~~~f~Al~E~aEK~~ 181 (234)
T 3plt_A 102 IEASVQPSRDRKEKITDEIAHLKYKDPQSTKIPVLEQELVRAEAESLVAEAQLSNITREKLKAAYSYMFDSLRELSEKFA 181 (234)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhHHHHHHHHHHHHHHHHhccCCCCchHHHHHHHHHHHHHHhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHH
Q 007579 504 QQAQLRDALNEAL 516 (597)
Q Consensus 504 qQaqLrdALnEaL 516 (597)
--+..-..|.+.|
T Consensus 182 ila~~gk~Ll~ll 194 (234)
T 3plt_A 182 LIAGYGKALLELL 194 (234)
T ss_dssp HHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHhc
No 277
>2zqm_A Prefoldin beta subunit 1; chaperone; HET: CIT; 1.90A {Thermococcus SP} PDB: 2zdi_A
Probab=35.29 E-value=2e+02 Score=24.04 Aligned_cols=35 Identities=17% Similarity=0.313 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 007579 495 LKFRLQAMEQQAQLRDALNEALTAEVRRLKVATQE 529 (597)
Q Consensus 495 LK~RLqaLEqQaqLrdALnEaLkeEVqrLK~a~gE 529 (597)
|+.++..++....-.+...+.+.+++..|+..+-+
T Consensus 75 L~~~~e~ie~~i~~le~~~~~l~~~l~~lk~~l~~ 109 (117)
T 2zqm_A 75 LKEKIETLEVRLNALERQEKKLNEKLKELTAQIQS 109 (117)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444333334444455555555544443
No 278
>1wt6_A Myotonin-protein kinase; coiled-coil, kinase activation, DMPK, molecular replacement, transferase; 1.60A {Homo sapiens}
Probab=35.11 E-value=2.2e+02 Score=24.46 Aligned_cols=17 Identities=35% Similarity=0.423 Sum_probs=7.0
Q ss_pred HHHHHHHHHHHHHHhcc
Q 007579 513 NEALTAEVRRLKVATQE 529 (597)
Q Consensus 513 nEaLkeEVqrLK~a~gE 529 (597)
|+.|..|+++|+..+-+
T Consensus 54 n~eL~~e~~~l~~~~ee 70 (81)
T 1wt6_A 54 NRDLEAHVRQLQERMEL 70 (81)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33333444444444433
No 279
>3a2a_A Voltage-gated hydrogen channel 1; voltage-gated proton channel, alternative splicing, coiled C transport, ionic channel, membrane, transmembrane; 2.00A {Homo sapiens}
Probab=35.08 E-value=72 Score=25.83 Aligned_cols=31 Identities=19% Similarity=0.234 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007579 483 RDSVGLTNQNNELKFRLQAMEQQAQLRDALN 513 (597)
Q Consensus 483 re~~~L~aEN~ELK~RLqaLEqQaqLrdALn 513 (597)
++...|..-|-.|-.+++.|+.++--.+..+
T Consensus 11 ~q~~kLKq~n~~L~~kv~~Le~~c~e~eQEi 41 (58)
T 3a2a_A 11 RQLLRLKQMNVQLAAKIQHLEFSCSEKEQEI 41 (58)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445556666666667777766665554333
No 280
>4dk0_A Putative MACA; alpha-hairpin, lipoyl, beta-barrel, periplasmic protein, MEM protein; 3.50A {Aggregatibacter actinomycetemcomitans} PDB: 4dk1_A
Probab=34.98 E-value=1.6e+02 Score=28.73 Aligned_cols=27 Identities=4% Similarity=0.118 Sum_probs=10.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007579 494 ELKFRLQAMEQQAQLRDALNEALTAEV 520 (597)
Q Consensus 494 ELK~RLqaLEqQaqLrdALnEaLkeEV 520 (597)
..+.++..++.++....+..+.++..+
T Consensus 126 ~a~a~~~~~~~~l~~~~~~l~~a~~~l 152 (369)
T 4dk0_A 126 NAKAEMDVVQENIKQAEIEVNTAETNL 152 (369)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 333344444333333333333333333
No 281
>1gk6_A Vimentin; intermediate filament, dimer, parallel coiled coil, heptad repeat, leucine zipper, fusion protein; 1.9A {Saccharomyces cerevisiae} SCOP: h.1.20.1
Probab=34.38 E-value=1e+02 Score=24.26 Aligned_cols=32 Identities=28% Similarity=0.343 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007579 459 ELEHKVQTLQTEATTLSAQLTLLQRDSVGLTN 490 (597)
Q Consensus 459 ELE~KVq~LQtEN~tLsaQLtlLqre~~~L~a 490 (597)
++..++..|+.+...++..++...+++..|..
T Consensus 4 ~~q~~i~~le~el~~~r~e~~~q~~eYq~Lln 35 (59)
T 1gk6_A 4 QLEDKVEELLSKNYHLENEVARLKKLVGDLLN 35 (59)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555555555555544444444443
No 282
>3ghg_B Fibrinogen beta chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_B* 1deq_B 2a45_H*
Probab=34.34 E-value=2.7e+02 Score=30.24 Aligned_cols=32 Identities=9% Similarity=0.233 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccccC
Q 007579 501 AMEQQAQLRDALNEALTAEVRRLKVATQEMAS 532 (597)
Q Consensus 501 aLEqQaqLrdALnEaLkeEVqrLK~a~gEi~~ 532 (597)
..+..++.+..+.+.+...|+.|+.++..+.+
T Consensus 160 ~~~~~i~~l~~~~~~~~~~i~~l~~~~~~~~~ 191 (461)
T 3ghg_B 160 NIPTNLRVLRSILENLRSKIQKLESDVSAQME 191 (461)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 34556667777788888899999988876543
No 283
>2oa5_A Hypothetical protein BQLF2; MHR28B, NESG, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; HET: PE5; 2.10A {Murid herpesvirus 4} SCOP: d.362.1.1 PDB: 2h3r_A*
Probab=34.12 E-value=1.1e+02 Score=27.58 Aligned_cols=24 Identities=17% Similarity=0.264 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 007579 478 LTLLQRDSVGLTNQNNELKFRLQA 501 (597)
Q Consensus 478 LtlLqre~~~L~aEN~ELK~RLqa 501 (597)
+++|..+.+.|..||+.||.+|..
T Consensus 10 ~EeLaaeL~kLqmENK~LKkkl~~ 33 (110)
T 2oa5_A 10 YEEMVKEVERLKLENKTLKQKVKS 33 (110)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTC--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhc
Confidence 456667777888999999999873
No 284
>2akf_A Coronin-1A; coiled coil, protein binding; 1.20A {Synthetic}
Probab=33.78 E-value=48 Score=23.87 Aligned_cols=24 Identities=29% Similarity=0.422 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 007579 459 ELEHKVQTLQTEATTLSAQLTLLQ 482 (597)
Q Consensus 459 ELE~KVq~LQtEN~tLsaQLtlLq 482 (597)
.||..+..|++-..+|.+++..|+
T Consensus 3 rlee~~r~l~~ivq~lq~r~drle 26 (32)
T 2akf_A 3 RLEEDVRNLNAIVQKLQERLDRLE 26 (32)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456666666555555555554444
No 285
>1am9_A Srebp-1A, protein (sterol regulatory element binding protein 1A); basic-helix-loop- helix-leucine zipper, transcription factor; HET: DNA; 2.30A {Homo sapiens} SCOP: a.38.1.1 PDB: 1ukl_C
Probab=33.69 E-value=1.5e+02 Score=24.30 Aligned_cols=21 Identities=24% Similarity=0.147 Sum_probs=10.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 007579 444 QSAARSKERKMRYISELEHKV 464 (597)
Q Consensus 444 ESAaRSReRKKqYIeELE~KV 464 (597)
.+.++-|.+=..++.+|..-|
T Consensus 12 ~~ErrRR~~in~~f~~L~~lv 32 (82)
T 1am9_A 12 AIEKRYRSSINDKIIELKDLV 32 (82)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHhc
Confidence 344444444455566665544
No 286
>1fxk_C Protein (prefoldin); archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1
Probab=33.52 E-value=1.6e+02 Score=25.45 Aligned_cols=10 Identities=30% Similarity=0.620 Sum_probs=4.7
Q ss_pred cccCCCCcCh
Q 007579 404 LEFGNGEFSG 413 (597)
Q Consensus 404 ~efG~g~~s~ 413 (597)
..+|.+-|..
T Consensus 54 vplg~~~yv~ 63 (133)
T 1fxk_C 54 VPVGAGSFIK 63 (133)
T ss_dssp EEEETTEEEE
T ss_pred EEcCCCcEEE
Confidence 3445555543
No 287
>1nkp_A C-MYC, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1
Probab=33.09 E-value=1.2e+02 Score=25.53 Aligned_cols=18 Identities=22% Similarity=0.372 Sum_probs=8.8
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 007579 485 SVGLTNQNNELKFRLQAM 502 (597)
Q Consensus 485 ~~~L~aEN~ELK~RLqaL 502 (597)
...|..+|..|+.+|+.|
T Consensus 68 ~~~L~~~n~~L~~rl~~L 85 (88)
T 1nkp_A 68 EDLLRKRREQLKHKLEQL 85 (88)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHh
Confidence 334444555555555444
No 288
>1zxa_A CGMP-dependent protein kinase 1, alpha isozyme; parallel coiled coil dimer, transferase; NMR {Homo sapiens}
Probab=33.07 E-value=58 Score=26.92 Aligned_cols=32 Identities=28% Similarity=0.292 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007579 452 RKMRYISELEHKVQTLQTEATTLSAQLTLLQR 483 (597)
Q Consensus 452 RKKqYIeELE~KVq~LQtEN~tLsaQLtlLqr 483 (597)
.|...|.+||..+..-..|+..|+.++..++.
T Consensus 22 ~Kde~I~eLE~~L~~kd~eI~eLr~~LdK~qs 53 (67)
T 1zxa_A 22 LKEERIKELEKRLSEKEEEIQELKRKLHKCQS 53 (67)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46677888888888888888888877765543
No 289
>2ke4_A CDC42-interacting protein 4; CIP4, TC10, coiled-coil, alternative splicing, cell membrane, coiled coil, cytoplasm, cytoskeleton, endocytosis; NMR {Homo sapiens}
Probab=32.86 E-value=2.4e+02 Score=24.37 Aligned_cols=21 Identities=24% Similarity=0.121 Sum_probs=10.7
Q ss_pred HHHHHHHHHHHHHHHHHhccc
Q 007579 510 DALNEALTAEVRRLKVATQEM 530 (597)
Q Consensus 510 dALnEaLkeEVqrLK~a~gEi 530 (597)
..-.+.|+.|+..|...+.++
T Consensus 68 ~~kid~L~~el~K~q~~L~e~ 88 (98)
T 2ke4_A 68 LSNIERLKLEVQKYEAWLAEA 88 (98)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555555555444
No 290
>2jmh_A BLO T 5, mite allergen BLO T 5; DUST mites, group 5; NMR {Blomia tropicalis} PDB: 2jrk_A
Probab=32.82 E-value=1.5e+02 Score=26.99 Aligned_cols=37 Identities=24% Similarity=0.366 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007579 457 ISELEHKVQTLQTEATTLSAQLTLLQRDSVGLTNQNNELKFRL 499 (597)
Q Consensus 457 IeELE~KVq~LQtEN~tLsaQLtlLqre~~~L~aEN~ELK~RL 499 (597)
+..++.+...++.-.-.|+.|++.|++ +.++++|.+|
T Consensus 21 v~~~~~~~~k~E~~Ll~Ls~Qi~~LE~------tKsKe~K~~I 57 (119)
T 2jmh_A 21 IEQANHAIEKGEHQLLYLQHQLDELNE------NKSKELQEKI 57 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH------HCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh------cCcHHHHHHH
Confidence 344555555555555666666666654 3455555553
No 291
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=32.73 E-value=1.9e+02 Score=32.28 Aligned_cols=40 Identities=30% Similarity=0.389 Sum_probs=24.1
Q ss_pred hHHHHHHHHhhHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHH
Q 007579 433 PKRAKRILANRQSAARSKER---KMRYISELEHKVQTLQTEATTL 474 (597)
Q Consensus 433 pKR~KRILaNRESAaRSReR---KKqYIeELE~KVq~LQtEN~tL 474 (597)
|.++..++ ++++++.|.+ +-.-+++|++++..|+.|...|
T Consensus 378 p~kai~ll--dea~a~~~~~~~~~p~~l~~~~~~~~~~~~~~~~~ 420 (854)
T 1qvr_A 378 PDKAIDLI--DEAAARLRMALESAPEEIDALERKKLQLEIEREAL 420 (854)
T ss_dssp HHHHHHHH--HHHHHHHHHTTTTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHH--HHHHHHHHhhccCCchhHHHHHHHHHHHHHHHHHH
Confidence 55555554 3455555543 4566778888887777665443
No 292
>4ad8_A DNA repair protein RECN; DNA binding protein, ATPase domain; HET: DNA; 4.00A {Deinococcus radiodurans}
Probab=32.19 E-value=4.5e+02 Score=27.33 Aligned_cols=34 Identities=18% Similarity=0.239 Sum_probs=13.9
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007579 435 RAKRILANRQSAARSKERKMRYISELEHKVQTLQ 468 (597)
Q Consensus 435 R~KRILaNRESAaRSReRKKqYIeELE~KVq~LQ 468 (597)
+.+++++.|....+....+.+.++.|+.++..+.
T Consensus 187 ~~~~~~~~~~~l~~~~~~~~~~l~~l~~ql~ei~ 220 (517)
T 4ad8_A 187 AWREAVSRLERLQASQRERARQIDLLAFQVQEIS 220 (517)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 3444454454433333333333444444444333
No 293
>2js5_A Uncharacterized protein; homodimer, protein structure, spectroscopy, structural genomics, PSI-2, protein structure initiative; NMR {Methylococcus capsulatus}
Probab=31.40 E-value=2.3e+02 Score=23.73 Aligned_cols=26 Identities=35% Similarity=0.441 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007579 457 ISELEHKVQTLQTEATTLSAQLTLLQ 482 (597)
Q Consensus 457 IeELE~KVq~LQtEN~tLsaQLtlLq 482 (597)
+++|+.+|+.|.....++...|-.|-
T Consensus 5 i~eLkkevkKL~~~A~q~kmdLHDLa 30 (71)
T 2js5_A 5 AEELKAKLKKLNAQATALKMDLHDLA 30 (71)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHh
Confidence 44555666655555555555554443
No 294
>1u00_A HSC66, chaperone protein HSCA; DNAK, HSP70; 1.95A {Escherichia coli} SCOP: a.8.4.1 b.130.1.1
Probab=31.14 E-value=2.2e+02 Score=27.05 Aligned_cols=82 Identities=12% Similarity=0.179 Sum_probs=38.2
Q ss_pred cChHHHhhhcchHHHHhhhccChHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHH
Q 007579 411 FSGAELKKIMANEKLAEIALTDPKRAKRILANRQSAARSKERKMRYISELEHKVQTL-----QTEATTLSAQLTLLQRDS 485 (597)
Q Consensus 411 ~s~~E~KKim~~ekLaElAl~DpKR~KRILaNRESAaRSReRKKqYIeELE~KVq~L-----QtEN~tLsaQLtlLqre~ 485 (597)
++++|..+.+. ++.+++..|.+++.++. .|.+=..|+-+++.++..+ ..+...+...+..++.-+
T Consensus 116 Ls~eei~~~~~--~~~~~~~~D~~~~e~~e--------~kn~le~~i~~~~~~l~~~~~~~~~~~k~~i~~~l~~~~~wl 185 (227)
T 1u00_A 116 LTDSEIASMIK--DSMSYAEQDVKARMLAE--------QKVEAARVLESLHGALAADAALLSAAERQVIDDAAAHLSEVA 185 (227)
T ss_dssp CCHHHHHHHHH--HHHHTHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHGGGSCHHHHHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHH--HHHhhhcccHHHHHHHH--------HHHHHHHHHHHHHHHHHhhhccCCHHHHHHHHHHHHHHHHHH
Confidence 67777777654 33444444543333321 1222233666666655533 334444555555444321
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 007579 486 VGLTNQNNELKFRLQAMEQ 504 (597)
Q Consensus 486 ~~L~aEN~ELK~RLqaLEq 504 (597)
.. ....+++.++..|+.
T Consensus 186 ~~--~d~~~~~~~~~~L~~ 202 (227)
T 1u00_A 186 QG--DDVDAIEQAIKNVDK 202 (227)
T ss_dssp TS--SCHHHHHHHHHHHHH
T ss_pred hc--CCHHHHHHHHHHHHH
Confidence 10 123445555555543
No 295
>3vbb_A Seryl-tRNA synthetase, cytoplasmic; coiled-coil, ligase; 2.89A {Homo sapiens}
Probab=31.11 E-value=81 Score=34.44 Aligned_cols=28 Identities=21% Similarity=0.005 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHHHHHHhccccCCCCCCc
Q 007579 511 ALNEALTAEVRRLKVATQEMASESDPSK 538 (597)
Q Consensus 511 ALnEaLkeEVqrLK~a~gEi~~~~~~~~ 538 (597)
.....+.+++..+-..++.++.++.+.+
T Consensus 119 ~~~~~~~~~~~~~l~~iPN~~~~~vP~g 146 (522)
T 3vbb_A 119 AERIKLEAERFENLREIGNLLHPSVPIS 146 (522)
T ss_dssp HHHHHHHHHHHHHGGGSCCCCCTTSCCC
T ss_pred HHHHHHHHHHHHHHHhCCCCCCCCCCCC
Confidence 3344566777777778888877765533
No 296
>1qsd_A Protein (beta-tubulin binding post-chaperonin cofactor); four-helix-bundle, chaperone; 2.20A {Saccharomyces cerevisiae} SCOP: a.7.5.1
Probab=31.08 E-value=2.7e+02 Score=24.35 Aligned_cols=37 Identities=16% Similarity=0.169 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 007579 492 NNELKFRLQAMEQQAQLRDALNEALTAEVRRLKVATQ 528 (597)
Q Consensus 492 N~ELK~RLqaLEqQaqLrdALnEaLkeEVqrLK~a~g 528 (597)
...||.+.+.|+.-..+.......|.+.+..|...+.
T Consensus 45 ey~iKkq~evl~Et~~mipd~~~Rl~~a~~~L~~~l~ 81 (106)
T 1qsd_A 45 PYDLKKQEEVLDDTKRLLPTLYEKIREFKEDLEQFLK 81 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Confidence 4567777777777777777777777777777777773
No 297
>1oxz_A ADP-ribosylation factor binding protein GGA1; GAT domain, membrane protein; 2.80A {Homo sapiens} SCOP: a.7.8.1
Probab=30.98 E-value=3.6e+02 Score=25.74 Aligned_cols=79 Identities=13% Similarity=0.196 Sum_probs=49.0
Q ss_pred hHHHHhhh----ccChHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHH
Q 007579 422 NEKLAEIA----LTDPKRAKRILANRQSAARSKERKMRYISELEHKVQTLQTEATTLSAQLTLL----------QRDSVG 487 (597)
Q Consensus 422 ~ekLaElA----l~DpKR~KRILaNRESAaRSReRKKqYIeELE~KVq~LQtEN~tLsaQLtlL----------qre~~~ 487 (597)
..+|++|- ..|.+.+-|+|++.... .++|.+|+..+-..+..++.-..-|...|..+ ..-+..
T Consensus 35 Sa~L~eLirs~~PeDL~~AN~LiK~m~~~---d~~r~e~~~k~~~eLe~V~~nv~LL~EML~~~~pg~~~~~~d~Ell~e 111 (186)
T 1oxz_A 35 SKMLARLLKSSHPEDLRAANKLIKEMVQE---DQKRMEKISKRVNAIEEVNNNVKLLTEMVMSHSQGGAAAGSSEDLMKE 111 (186)
T ss_dssp HHHHHHHHSCCSHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSSCSCTTTTHHHHHH
T ss_pred HHHHHHHhcCCChhhHHHHHHHHHHHhcc---chhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCccccHHHHHH
Confidence 44677763 24556888888887754 35666776666666666666666666666643 233445
Q ss_pred HHHHHHHHHHHHHHHH
Q 007579 488 LTNQNNELKFRLQAME 503 (597)
Q Consensus 488 L~aEN~ELK~RLqaLE 503 (597)
|...-+.++.+|+.|-
T Consensus 112 L~~~Ck~~qp~i~~Li 127 (186)
T 1oxz_A 112 LYQRCERMRPTLFRLA 127 (186)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 5566666666666553
No 298
>1m1j_C Fibrinogen gamma chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_C
Probab=30.85 E-value=5e+02 Score=27.48 Aligned_cols=30 Identities=10% Similarity=0.170 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 007579 498 RLQAMEQQAQLRDALNEALTAEVRRLKVAT 527 (597)
Q Consensus 498 RLqaLEqQaqLrdALnEaLkeEVqrLK~a~ 527 (597)
+|..|+.++...+...+.|+..|..|....
T Consensus 106 ~i~~l~~~~~~~~~~i~~l~~~i~~l~~~~ 135 (409)
T 1m1j_C 106 TIQQLTDMHIMNSNKITQLKQKIAQLESHC 135 (409)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHh
Confidence 344444444334444555555565555433
No 299
>3lay_A Zinc resistance-associated protein; salmonella typhimurium L structural genomics, center for structural genomics of INFE diseases; 2.70A {Salmonella enterica subsp}
Probab=30.82 E-value=80 Score=29.84 Aligned_cols=17 Identities=29% Similarity=0.288 Sum_probs=0.0
Q ss_pred cccccchhhhhcccCCC
Q 007579 355 RHYRSVSMDSFMGKLNF 371 (597)
Q Consensus 355 rH~RS~SmDs~~~~l~~ 371 (597)
.|.+|.-||---.+|-|
T Consensus 4 ~~~~~~~~~~~~~~~~~ 20 (175)
T 3lay_A 4 HHHHSSGVDLGTENLYF 20 (175)
T ss_dssp -----------------
T ss_pred ccccccccccchhHHHh
Confidence 46666666653334433
No 300
>3mtu_A Tropomyosin alpha-1 chain, microtubule-associated RP/EB family member 1; tropomysoin, overlap complex, coiled-coils, contractIle PROT; HET: MSE; 2.10A {Gallus gallus} PDB: 3mud_C*
Probab=30.75 E-value=2.1e+02 Score=23.55 Aligned_cols=28 Identities=14% Similarity=0.252 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007579 457 ISELEHKVQTLQTEATTLSAQLTLLQRD 484 (597)
Q Consensus 457 IeELE~KVq~LQtEN~tLsaQLtlLqre 484 (597)
++.+..|++.|+.|...+..++..|+++
T Consensus 4 m~aiKkkmqaLk~Ekdna~e~~e~lE~E 31 (75)
T 3mtu_A 4 MDAIKKKMQMLKLDKENALDRAEQAEAD 31 (75)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555556666666666666555553
No 301
>1a93_B MAX protein, coiled coil, LZ; leucine zipper, 2D solution structure, H-bonds, buried salt bridge, proto-oncogene, nuclear protein; NMR {Mus musculus} SCOP: h.1.3.1 PDB: 2a93_B
Probab=30.74 E-value=67 Score=23.65 Aligned_cols=22 Identities=32% Similarity=0.350 Sum_probs=9.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 007579 463 KVQTLQTEATTLSAQLTLLQRD 484 (597)
Q Consensus 463 KVq~LQtEN~tLsaQLtlLqre 484 (597)
|....+.++..|++|...|+.+
T Consensus 8 Kn~a~qqDIddlkrQN~~Le~Q 29 (34)
T 1a93_B 8 KNDTHQQDIDDLKRQNALLEQQ 29 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHhhHhhHHHHHHHHHHHHHH
Confidence 3344444444444444444443
No 302
>3m0a_A TNF receptor-associated factor 2; TRAF2: CIAP2 and the TRAF1: TRAF2: CIAP2 complexes, apoptosi coil, cytoplasm, metal-binding; 2.61A {Homo sapiens} PDB: 3m0d_A 3m06_A
Probab=30.40 E-value=1.9e+02 Score=22.49 Aligned_cols=49 Identities=14% Similarity=0.194 Sum_probs=32.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007579 457 ISELEHKVQTLQTEATTLSAQLTLLQRDSVGLTNQNNELKFRLQAMEQQ 505 (597)
Q Consensus 457 IeELE~KVq~LQtEN~tLsaQLtlLqre~~~L~aEN~ELK~RLqaLEqQ 505 (597)
+..||.++..++.-...+...+..+.-....+..++......+..|+.+
T Consensus 7 ~~~le~k~~~~e~iv~~l~~~v~~~~~~le~~~~q~~~~~~~i~~Le~k 55 (66)
T 3m0a_A 7 CESLEKKTATFENIVCVLNREVERVAMTAEACSRQHRLDQDKIEALSSK 55 (66)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhhhHHHhHHHHHHHH
Confidence 4556777777777666676677666666666666666666666666664
No 303
>3viq_B Mating-type switching protein SWI5; recombination activator; 2.20A {Schizosaccharomyces pombe} PDB: 3vir_A*
Probab=30.25 E-value=2.2e+02 Score=24.52 Aligned_cols=20 Identities=20% Similarity=0.263 Sum_probs=8.6
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 007579 457 ISELEHKVQTLQTEATTLSA 476 (597)
Q Consensus 457 IeELE~KVq~LQtEN~tLsa 476 (597)
|.+|+.++..|+.+...+.+
T Consensus 10 i~~L~~q~~~L~~ei~~~~a 29 (85)
T 3viq_B 10 VHLLEQQKEQLESSLQDALA 29 (85)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444443
No 304
>3he4_A Synzip6; heterodimeric coiled-coil, de novo protein; 2.46A {Artificial gene}
Probab=30.24 E-value=26 Score=27.56 Aligned_cols=35 Identities=20% Similarity=0.307 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007579 469 TEATTLSAQLTLLQRDSVGLTNQNNELKFRLQAME 503 (597)
Q Consensus 469 tEN~tLsaQLtlLqre~~~L~aEN~ELK~RLqaLE 503 (597)
.||+.|..-+..|+.++..|+.....|...+..||
T Consensus 17 kenaklenivarlendnanlekdianlekdianle 51 (56)
T 3he4_A 17 KENAKLENIVARLENDNANLEKDIANLEKDIANLE 51 (56)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhcchHHHHHHHHhcccchHHHHHHHHHHHHHHHH
Confidence 35666655555555555554444444444444443
No 305
>3he4_B Synzip5; heterodimeric coiled-coil, de novo protein; 2.46A {Artificial gene}
Probab=29.62 E-value=1.3e+02 Score=22.84 Aligned_cols=14 Identities=43% Similarity=0.636 Sum_probs=8.4
Q ss_pred HHHHHHHHHHHHHH
Q 007579 454 MRYISELEHKVQTL 467 (597)
Q Consensus 454 KqYIeELE~KVq~L 467 (597)
+.||.|||.+-..|
T Consensus 9 knyiqeleernael 22 (46)
T 3he4_B 9 KNYIQELEERNAEL 22 (46)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhHHH
Confidence 45777776665444
No 306
>3mq1_A Mite allergen DER P 5; DUST mite; HET: MRD MPD; 2.80A {Dermatophagoides pteronyssinus}
Probab=29.43 E-value=1.4e+02 Score=26.64 Aligned_cols=57 Identities=12% Similarity=0.236 Sum_probs=29.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHH
Q 007579 457 ISELEHKVQTLQTEATTLSAQLTLLQRDSVGLTNQNNELKFRL-QAMEQQAQLRDALNEALTAE 519 (597)
Q Consensus 457 IeELE~KVq~LQtEN~tLsaQLtlLqre~~~L~aEN~ELK~RL-qaLEqQaqLrdALnEaLkeE 519 (597)
+..++.+...++.-.-.|+.|++.|++ +.++++|.+| .+++--+.+.+.-...|..|
T Consensus 6 v~~~~~~~~k~E~~Ll~Ls~Qi~~LEk------tKsKe~K~~IlrEi~~~~~~i~Ga~~~lerE 63 (103)
T 3mq1_A 6 MERIHEQIKKGELALFYLQEQINHFEE------KPTKEMKDKIVAEMDTIIAMIDGVRGVLDRL 63 (103)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH------SCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHc------cCcHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555566666666666777766664 3455666554 33433333333333333333
No 307
>2lw1_A ABC transporter ATP-binding protein UUP; ABC REG subfamily, DNA binding protein; NMR {Escherichia coli}
Probab=29.16 E-value=2.2e+02 Score=23.56 Aligned_cols=26 Identities=27% Similarity=0.359 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007579 460 LEHKVQTLQTEATTLSAQLTLLQRDS 485 (597)
Q Consensus 460 LE~KVq~LQtEN~tLsaQLtlLqre~ 485 (597)
+.+++..|..++..|..++..|+...
T Consensus 20 eqrEle~le~~Ie~LE~~i~~le~~l 45 (89)
T 2lw1_A 20 LQRELEQLPQLLEDLEAKLEALQTQV 45 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455566666666666666665554
No 308
>3fpp_A Macrolide-specific efflux protein MACA; hexameric assembly, membrane fusion protein, drug efflux pump, periplasmic protein; 2.99A {Escherichia coli}
Probab=28.78 E-value=1.7e+02 Score=28.23 Aligned_cols=14 Identities=14% Similarity=0.012 Sum_probs=6.2
Q ss_pred HHHHHHHHHHHHHH
Q 007579 513 NEALTAEVRRLKVA 526 (597)
Q Consensus 513 nEaLkeEVqrLK~a 526 (597)
.+.++++++.++..
T Consensus 137 l~~a~a~l~~a~~~ 150 (341)
T 3fpp_A 137 IKRNQASLDTAKTN 150 (341)
T ss_dssp HHHTHHHHTTTTTT
T ss_pred HHHHHHHHHHHHHh
Confidence 34444444444433
No 309
>2inr_A DNA topoisomerase 4 subunit A; topoisomerase II fold; HET: DNA; 2.80A {Staphylococcus aureus}
Probab=28.44 E-value=6.2e+02 Score=27.74 Aligned_cols=46 Identities=22% Similarity=0.324 Sum_probs=35.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 007579 484 DSVGLTNQNNELKFRLQAMEQQAQLRDALNEALTAEVRRLKVATQE 529 (597)
Q Consensus 484 e~~~L~aEN~ELK~RLqaLEqQaqLrdALnEaLkeEVqrLK~a~gE 529 (597)
+...|..|-.+|+.++..|+.-+.-...+.+.+++|+..++...|.
T Consensus 455 e~~kl~~E~~~l~~ei~~l~~iL~~~~~~~~~i~~el~~i~~~yg~ 500 (514)
T 2inr_A 455 DIVALEGEHKELEALIKQLRHILDNHDALLNVIKEELNEIKKKFKS 500 (514)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHcCC
Confidence 4566777778888888877666666666788889999999988874
No 310
>2xv5_A Lamin-A/C; structural protein, intermediate filaments, nuclear membrane LEFT-handed coiled coil, right-handed coiled coil; HET: MSE; 2.40A {Homo sapiens}
Probab=28.26 E-value=2.4e+02 Score=23.34 Aligned_cols=21 Identities=14% Similarity=0.409 Sum_probs=9.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 007579 450 KERKMRYISELEHKVQTLQTE 470 (597)
Q Consensus 450 ReRKKqYIeELE~KVq~LQtE 470 (597)
|+..+.-|..||.+++.+..+
T Consensus 7 ~~~~~~~i~~lE~eL~~~r~e 27 (74)
T 2xv5_A 7 RDTSRRLLAEKEREMAEMRAR 27 (74)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444333
No 311
>1fmh_B General control protein GCN4; coiled coil, leucine zipper, inter-helical ION pairing, transcription; NMR {Synthetic} SCOP: k.6.1.1 PDB: 1u2u_B
Probab=28.18 E-value=89 Score=22.45 Aligned_cols=15 Identities=33% Similarity=0.434 Sum_probs=6.0
Q ss_pred HHHHHHHHHHHHHHH
Q 007579 488 LTNQNNELKFRLQAM 502 (597)
Q Consensus 488 L~aEN~ELK~RLqaL 502 (597)
|.+.|..-|+++++|
T Consensus 13 lkarnyaakqkvqal 27 (33)
T 1fmh_B 13 LKARNYAAKQKVQAL 27 (33)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHhhHHHHHHHHHH
Confidence 333444444444433
No 312
>3e98_A GAF domain of unknown function; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 2.43A {Pseudomonas aeruginosa}
Probab=27.93 E-value=1.3e+02 Score=29.46 Aligned_cols=56 Identities=13% Similarity=0.210 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007579 457 ISELEHKVQTLQTEATTLSAQLTLLQRDSVGLTNQNNELKFRLQAMEQQAQLRDALNEAL 516 (597)
Q Consensus 457 IeELE~KVq~LQtEN~tLsaQLtlLqre~~~L~aEN~ELK~RLqaLEqQaqLrdALnEaL 516 (597)
++.|+.|++.|+.+...|-... +++..+......|..+|-....-..+.+.+.+.|
T Consensus 74 ~~~LR~r~~~Le~~L~~Li~~A----~~Ne~l~~~~~~l~l~LL~a~sl~~l~~~L~~~l 129 (252)
T 3e98_A 74 VRLLRERNIEMRHRLSQLMDVA----RENDRLFDKTRRLVLDLLDATSLEDVVSTVEDSL 129 (252)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHH
Confidence 3344444444444444443332 3344444444444444443333333444444443
No 313
>2wpq_A Trimeric autotransporter adhesin fragment; hydrophobic core, ION coordination, protein export, TAA, membrane protein, polar core; 1.85A {Salmonella enterica subsp}
Probab=27.70 E-value=3.2e+02 Score=24.18 Aligned_cols=40 Identities=18% Similarity=0.120 Sum_probs=34.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007579 487 GLTNQNNELKFRLQAMEQQAQLRDALNEALTAEVRRLKVA 526 (597)
Q Consensus 487 ~L~aEN~ELK~RLqaLEqQaqLrdALnEaLkeEVqrLK~a 526 (597)
.-.+.-..|-..+..|++.+.+++...-.+..||.|||..
T Consensus 59 TNTTnItNL~dsv~~L~DDALLWn~~~~~~~~~~~~~~~~ 98 (99)
T 2wpq_A 59 TNTTNINNLSDSMKQIEDKIEEILSKIYHIENEIARIKKL 98 (99)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccccchHHHHHHHHhHHHHHHcchhhhhHHHHHHHHhc
Confidence 3344566788899999999999999999999999999975
No 314
>2p4w_A Transcriptional regulatory protein ARSR family; archaea, PHR, heat shock, transcriptional regulation, winged DNA binding; 2.60A {Pyrococcus furiosus} SCOP: a.4.5.64
Probab=27.64 E-value=2.5e+02 Score=26.33 Aligned_cols=23 Identities=9% Similarity=0.049 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHHHHHHHHHhccc
Q 007579 508 LRDALNEALTAEVRRLKVATQEM 530 (597)
Q Consensus 508 LrdALnEaLkeEVqrLK~a~gEi 530 (597)
+.+...|.+..||.++-..++..
T Consensus 162 ~~~~~~~~~e~~~~~~~~~~~~~ 184 (202)
T 2p4w_A 162 TMRRLAEENRQIIEEIFRDIEKI 184 (202)
T ss_dssp HHHHHHHHCHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHHHHHHHhccc
Confidence 33445556666777777666543
No 315
>1gmj_A ATPase inhibitor; coiled-coil structure, P dependent oligomerization, ATP hydrolysis; 2.2A {Bos taurus} SCOP: h.4.8.1 PDB: 1ohh_H* 1hf9_A
Probab=27.48 E-value=2.6e+02 Score=24.04 Aligned_cols=38 Identities=18% Similarity=0.186 Sum_probs=15.1
Q ss_pred HHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007579 444 QSAARSKERKM--RYISELEHKVQTLQTEATTLSAQLTLL 481 (597)
Q Consensus 444 ESAaRSReRKK--qYIeELE~KVq~LQtEN~tLsaQLtlL 481 (597)
+.++..+.||+ .-|+.-+.+++.|+.++..++..|..|
T Consensus 38 ekEqL~~LKkkl~~el~~h~~ei~~le~~i~rhk~~i~~l 77 (84)
T 1gmj_A 38 AKEQLAALKKHKENEISHHAKEIERLQKEIERHKQSIKKL 77 (84)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33333334444 223333333444444444444444433
No 316
>2w83_C C-JUN-amino-terminal kinase-interacting protein 4; golgi apparatus, protein transport, ER-golgi transport, ARF, GTPase, effector, myristate; HET: GTP; 1.93A {Homo sapiens}
Probab=27.46 E-value=2.9e+02 Score=23.53 Aligned_cols=25 Identities=20% Similarity=0.134 Sum_probs=10.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 007579 473 TLSAQLTLLQRDSVGLTNQNNELKF 497 (597)
Q Consensus 473 tLsaQLtlLqre~~~L~aEN~ELK~ 497 (597)
.|.++|.+|..+...|..|+..++.
T Consensus 34 DLI~rvdELt~E~e~l~~El~s~~~ 58 (77)
T 2w83_C 34 DLIAKVDELTCEKDVLQGELEAVKQ 58 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 3444444444444444444433333
No 317
>3ljm_A Coil Ser L9C; de novo design, three stranded coiled coil, APO, de novo Pro; 1.36A {Synthetic} PDB: 2jgo_A 1cos_A 3h5g_A 3h5f_A 3pbj_A 2x6p_C 1coi_A
Probab=27.34 E-value=1e+02 Score=21.91 Aligned_cols=18 Identities=28% Similarity=0.434 Sum_probs=7.3
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 007579 459 ELEHKVQTLQTEATTLSA 476 (597)
Q Consensus 459 ELE~KVq~LQtEN~tLsa 476 (597)
.||.++..|+.....|..
T Consensus 5 alekkcaalesklqalek 22 (31)
T 3ljm_A 5 ALEKKCAALESKLQALEK 22 (31)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 344444444333333333
No 318
>1gk4_A Vimentin; intermediate filament, dimer, parallel coiled coil, heptad repeat, stutter; 2.3A {Homo sapiens} SCOP: h.1.20.1
Probab=27.34 E-value=2.6e+02 Score=23.04 Aligned_cols=18 Identities=17% Similarity=0.399 Sum_probs=6.7
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 007579 461 EHKVQTLQTEATTLSAQL 478 (597)
Q Consensus 461 E~KVq~LQtEN~tLsaQL 478 (597)
..++..|+.+...++..+
T Consensus 32 q~~i~~lE~eL~~~r~e~ 49 (84)
T 1gk4_A 32 QDTIGRLQDEIQNMKEEM 49 (84)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 333333333333333333
No 319
>2gkw_A TNF receptor-associated factor 3; CD40, NF-KB signaling, BAFF receptor, TRAF3, apoptosis; 2.70A {Homo sapiens} PDB: 1kzz_A 1l0a_A 1zms_A 1rf3_A
Probab=27.33 E-value=90 Score=28.67 Aligned_cols=17 Identities=12% Similarity=0.075 Sum_probs=8.1
Q ss_pred HHHHHHHHHHHHHHHHH
Q 007579 458 SELEHKVQTLQTEATTL 474 (597)
Q Consensus 458 eELE~KVq~LQtEN~tL 474 (597)
..||.++..++.....+
T Consensus 3 ~~l~~~~~~~~~~~~~~ 19 (192)
T 2gkw_A 3 GLLESQLSRHDQMLSVH 19 (192)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 45555555554433333
No 320
>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A*
Probab=27.25 E-value=2.7e+02 Score=30.66 Aligned_cols=64 Identities=13% Similarity=0.242 Sum_probs=36.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007579 458 SELEHKVQTLQTEATTLSAQLTLLQRDSVGLTNQNNELKFRLQAMEQQAQLRDALNEALTAEVRRL 523 (597)
Q Consensus 458 eELE~KVq~LQtEN~tLsaQLtlLqre~~~L~aEN~ELK~RLqaLEqQaqLrdALnEaLkeEVqrL 523 (597)
.-++..+..|+.+...+.+++..++.....|...-.+++.+|..+... +...+.+.++..+.+|
T Consensus 348 ~~i~~~l~~l~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~l~~~~~~--~~~~v~~~l~~~i~~l 411 (695)
T 2j69_A 348 EAVARRIPLLEQDVNELKKRIDSVEPEFNKLTGIRDEFQKEIINTRDT--QARTISESFRSYVLNL 411 (695)
T ss_dssp HHHHHHHHHHTSCSHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHH
Confidence 335566666666666777777777766666666666666666555332 2223344444455444
No 321
>1r8e_A Multidrug-efflux transporter regulator; protein-DNA complex, MERR-family transcription activator, MU binding protein; HET: P4P; 2.40A {Bacillus subtilis} SCOP: a.6.1.3 d.60.1.1 PDB: 1exi_A* 1exj_A* 3iao_A 3q5p_A* 3d71_A* 3q3d_A* 3q1m_A* 3q2y_A* 3q5r_A* 3q5s_A* 3d70_A 3d6z_A* 3d6y_A* 1bow_A 2bow_A*
Probab=27.04 E-value=1.6e+02 Score=27.60 Aligned_cols=43 Identities=9% Similarity=0.030 Sum_probs=20.7
Q ss_pred ChHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007579 432 DPKRAKRILANRQSAARSKERKMRYISELEHKVQTLQTEATTLSAQLTLLQR 483 (597)
Q Consensus 432 DpKR~KRILaNRESAaRSReRKKqYIeELE~KVq~LQtEN~tLsaQLtlLqr 483 (597)
--+.+|++|.++ ... ..+-|+.+.+.|+.+...|...+..|+.
T Consensus 65 ~l~~i~~~~~~~--~~~-------~~~~l~~~~~~l~~~i~~l~~~~~~l~~ 107 (278)
T 1r8e_A 65 PLEEMKKAQDLE--MEE-------LFAFYTEQERQIREKLDFLSALEQTISL 107 (278)
T ss_dssp CHHHHHHHTTSC--HHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHhC--hHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456677777766 111 2233444444444444444444444433
No 322
>1deb_A APC protein, adenomatous polyposis coli protein; coiled coil, tumor suppressor, structural protein; 2.40A {Homo sapiens} SCOP: h.1.18.1
Probab=26.12 E-value=2.5e+02 Score=22.40 Aligned_cols=23 Identities=17% Similarity=0.294 Sum_probs=11.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 007579 483 RDSVGLTNQNNELKFRLQAMEQQ 505 (597)
Q Consensus 483 re~~~L~aEN~ELK~RLqaLEqQ 505 (597)
++...|..||..|+..|+.=..+
T Consensus 10 ~QVe~Lk~ENshLrrEL~dNS~~ 32 (54)
T 1deb_A 10 KQVEALKMENSNLRQELEDNSNH 32 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhHHHHHHHhhHHH
Confidence 33344455666666555544333
No 323
>2f1m_A Acriflavine resistance protein A; helical hairpin, lipoyl domain, beta barrel, transport prote; 2.71A {Escherichia coli}
Probab=25.85 E-value=2.1e+02 Score=26.74 Aligned_cols=8 Identities=25% Similarity=0.443 Sum_probs=3.1
Q ss_pred HHHHHHHH
Q 007579 518 AEVRRLKV 525 (597)
Q Consensus 518 eEVqrLK~ 525 (597)
++++.++.
T Consensus 119 a~l~~a~~ 126 (277)
T 2f1m_A 119 AAVETARI 126 (277)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 33333333
No 324
>1fzc_C Fibrin; blood coagulation, plasma protein, crosslinking; HET: NAG MAN; 2.30A {Homo sapiens} SCOP: d.171.1.1 h.1.8.1 PDB: 1fzb_C* 1fza_C* 1fze_C* 1fzf_C* 1fzg_C* 2xnx_C 2xny_C 3e1i_C* 2hlo_C* 1n8e_C 1n86_C* 2q9i_C* 2z4e_C* 2h43_C* 2hod_C* 2hpc_C* 3h32_C* 1re3_C* 1ltj_C* 1lt9_C* ...
Probab=25.84 E-value=33 Score=35.27 Aligned_cols=25 Identities=16% Similarity=0.085 Sum_probs=10.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 007579 457 ISELEHKVQTLQTEATTLSAQLTLL 481 (597)
Q Consensus 457 IeELE~KVq~LQtEN~tLsaQLtlL 481 (597)
|..||.+|..++++...|...+..+
T Consensus 6 ~~~lE~~Il~~~~~i~~L~~~l~~~ 30 (319)
T 1fzc_C 6 IMKYEASILTHDSSIRYLQEIYNSN 30 (319)
T ss_dssp ----CTTTTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhChHHHHHHHHHHHHHH
Confidence 4445555555555554444444443
No 325
>3vp9_A General transcriptional corepressor TUP1; four helix bundle; 1.80A {Saccharomyces cerevisiae} PDB: 3vp8_A
Probab=25.82 E-value=2e+02 Score=25.00 Aligned_cols=33 Identities=6% Similarity=0.059 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007579 457 ISELEHKVQTLQTEATTLSAQLTLLQRDSVGLT 489 (597)
Q Consensus 457 IeELE~KVq~LQtEN~tLsaQLtlLqre~~~L~ 489 (597)
-++.|.||..--.|...++..|-.|+..+..+.
T Consensus 38 ~~eyE~ki~~Qi~Emq~Ir~tvyeLE~~h~kmK 70 (92)
T 3vp9_A 38 QKDYDFKMNQQLAEMQQIRNTVYERELTHRKMK 70 (92)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 357777777666666666666666666554443
No 326
>2zdi_C Prefoldin subunit alpha; chaperone, cytoplasm; 3.00A {Pyrococcus horikoshii}
Probab=25.61 E-value=1e+02 Score=27.60 Aligned_cols=10 Identities=20% Similarity=0.238 Sum_probs=6.4
Q ss_pred cccccCCCCc
Q 007579 402 FSLEFGNGEF 411 (597)
Q Consensus 402 ~~~efG~g~~ 411 (597)
+-+.+|.|-|
T Consensus 82 V~v~lG~g~~ 91 (151)
T 2zdi_C 82 AIVSVGSGYA 91 (151)
T ss_dssp EEEEEETTEE
T ss_pred EEEEeCCCeE
Confidence 4566777755
No 327
>3tq2_A KE1; parallel three helix bundle, de novo protein; 1.10A {Synthetic}
Probab=25.58 E-value=1.7e+02 Score=21.38 Aligned_cols=30 Identities=20% Similarity=0.272 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007579 473 TLSAQLTLLQRDSVGLTNQNNELKFRLQAM 502 (597)
Q Consensus 473 tLsaQLtlLqre~~~L~aEN~ELK~RLqaL 502 (597)
.|++++..|.+++..|+-.-..||.++.+|
T Consensus 5 alkekvsalkeqflmlmfkvsalkekvsal 34 (36)
T 3tq2_A 5 ALKEKVSALKEQFLMLMFKVSALKEKVSAL 34 (36)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344455555555555555555555555443
No 328
>3gpv_A Transcriptional regulator, MERR family; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 1.90A {Bacillus thuringiensis serovarkonkukian}
Probab=25.51 E-value=2.6e+02 Score=24.87 Aligned_cols=76 Identities=8% Similarity=0.094 Sum_probs=0.0
Q ss_pred cChHHHhhhcchHHHHhhhccChHHHHHHHH----hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007579 411 FSGAELKKIMANEKLAEIALTDPKRAKRILA----NRQSAARSKERKMRYISELEHKVQTLQTEATTLSAQLTLLQRDSV 486 (597)
Q Consensus 411 ~s~~E~KKim~~ekLaElAl~DpKR~KRILa----NRESAaRSReRKKqYIeELE~KVq~LQtEN~tLsaQLtlLqre~~ 486 (597)
|+..+..++.-=-.|.++- .--+.+|+++. .......-+.-=.+++++|+.+++.|+.....|...+..++....
T Consensus 55 Y~~~dl~~l~~I~~lr~~G-~sL~eIk~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~i~~L~~~~~~L~~~i~~~~~~~~ 133 (148)
T 3gpv_A 55 FNEEALKYLEMILCLKNTG-MPIQKIKQFIDWSMEGDSTILHRLKLMKQQEANVLQLIQDTEKNLKKIQQKIAKYEDEIS 133 (148)
T ss_dssp BCHHHHHHHHHHHHHHTTT-CCHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-----
T ss_pred cCHHHHHHHHHHHHHHHcC-CCHHHHHHHHHhhhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred H
Q 007579 487 G 487 (597)
Q Consensus 487 ~ 487 (597)
.
T Consensus 134 ~ 134 (148)
T 3gpv_A 134 S 134 (148)
T ss_dssp -
T ss_pred c
No 329
>1ez3_A Syntaxin-1A; three helix bundle, endocytosis/exocytosis complex; 1.90A {Rattus norvegicus} SCOP: a.47.2.1 PDB: 1br0_A 3lg7_A*
Probab=25.45 E-value=3e+02 Score=23.12 Aligned_cols=70 Identities=7% Similarity=0.224 Sum_probs=39.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 007579 457 ISELEHKVQTLQTEATTLSAQLTLLQRDSVGLTN---QNNELKFRLQAMEQQAQLRDALNEALTAEVRRLKVATQE 529 (597)
Q Consensus 457 IeELE~KVq~LQtEN~tLsaQLtlLqre~~~L~a---EN~ELK~RLqaLEqQaqLrdALnEaLkeEVqrLK~a~gE 529 (597)
+++.=.+|+.++.+...|...|..|...+..+.+ ....++.+|+.+..+.. .+...++..|+.|+....+
T Consensus 7 m~~F~~~v~~I~~~i~~i~~~v~~l~~~~~~~L~~~~~~~~~~~~l~~l~~~i~---~~a~~ik~~Lk~l~~~~~~ 79 (127)
T 1ez3_A 7 MDEFFEQVEEIRGFIDKIAENVEEVKRKHSAILASPNPDEKTKEELEELMSDIK---KTANKVRSKLKSIEQSIEQ 79 (127)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHH
Confidence 4445566777777777777777777666655443 22356777776655533 2233344445555544443
No 330
>1cii_A Colicin IA; bacteriocin, ION channel formation, transmembrane protein; 3.00A {Escherichia coli} SCOP: f.1.1.1 h.4.3.1
Probab=24.83 E-value=7.4e+02 Score=27.44 Aligned_cols=51 Identities=10% Similarity=0.151 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007579 452 RKMRYISELEHKVQTLQTEATTLSAQLTLLQRDSVGLTNQNNELKFRLQAM 502 (597)
Q Consensus 452 RKKqYIeELE~KVq~LQtEN~tLsaQLtlLqre~~~L~aEN~ELK~RLqaL 502 (597)
+++.-|..+|.-|+.++.....+..+...++.....+..|...++.++..+
T Consensus 360 dArNEItsaeSaInslqaqvSa~t~e~k~A~d~l~a~~kek~~~~n~~a~~ 410 (602)
T 1cii_A 360 DARNKITSAESAVNSARNNLSARTNEQKHANDALNALLKEKENIRNQLSGI 410 (602)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 344444445555555544444444444444444444444444444444333
No 331
>3he5_B Synzip2; heterodimeric coiled-coil, de novo protein; 1.75A {Artificial gene}
Probab=24.79 E-value=2.1e+02 Score=22.23 Aligned_cols=13 Identities=31% Similarity=0.365 Sum_probs=5.8
Q ss_pred HHHHHHHHHHHHH
Q 007579 513 NEALTAEVRRLKV 525 (597)
Q Consensus 513 nEaLkeEVqrLK~ 525 (597)
...|+.||.||..
T Consensus 33 ianlrdeiarlen 45 (52)
T 3he5_B 33 IANLRDEIARLEN 45 (52)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 3344445555443
No 332
>3w03_C DNA repair protein XRCC4; coiled-coil, NHEJ, DSBS repair, KU70/80, DNA-PKCS, DNA ligas binding protein; HET: DNA; 8.49A {Homo sapiens}
Probab=24.76 E-value=1.4e+02 Score=28.74 Aligned_cols=11 Identities=36% Similarity=0.616 Sum_probs=0.4
Q ss_pred CCCCCCCccCC
Q 007579 179 GESLPPRNKHR 189 (597)
Q Consensus 179 ~~~LpPrk~HR 189 (597)
..+|-||.+|.
T Consensus 11 ~~~~~~~~~~m 21 (184)
T 3w03_C 11 SSGLVPRGSHM 21 (184)
T ss_dssp ----------C
T ss_pred ccCcccCCCcc
Confidence 45677777653
No 333
>3pik_A Cation efflux system protein CUSC; beta-barrel, lipoprotein, outer membrane; HET: UNL; 2.30A {Escherichia coli}
Probab=24.64 E-value=5e+02 Score=25.32 Aligned_cols=87 Identities=16% Similarity=0.124 Sum_probs=0.0
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHH
Q 007579 441 ANRQSAARSKERKMRYISELEHKVQTLQTEATTLSAQLTLLQRDSVGLTNQNNELKFRLQAMEQQ--------AQLRDAL 512 (597)
Q Consensus 441 aNRESAaRSReRKKqYIeELE~KVq~LQtEN~tLsaQLtlLqre~~~L~aEN~ELK~RLqaLEqQ--------aqLrdAL 512 (597)
+++-..+..+.+..+-..+++.....+..+......++..+++........-...+..+...+.+ ..+.++.
T Consensus 330 ~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~y~~G~~s~~dll~a~ 409 (446)
T 3pik_A 330 RNQANLDIAEIRQQQSVVNYEQKIQNAFKEVADALALRQSLNDQISAQQRYLASLQITLQRARALYQHGAVSYLEVLDAE 409 (446)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSCTHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCccHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHh
Q 007579 513 NEALTAEVRRLKVAT 527 (597)
Q Consensus 513 nEaLkeEVqrLK~a~ 527 (597)
.+.+..++..+....
T Consensus 410 ~~l~~a~~~~~~a~~ 424 (446)
T 3pik_A 410 RSLFATRQTLLDLNY 424 (446)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
No 334
>3t97_C Nuclear pore glycoprotein P62; nucleoporin, coiled-coil, nuclear pore complex, central TRAN channel, alpha helical proteins, triple helix; 2.80A {Rattus norvegicus}
Probab=24.62 E-value=62 Score=26.33 Aligned_cols=44 Identities=20% Similarity=0.231 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007579 477 QLTLLQRDSVGLTNQNNELKFRLQAMEQQAQLRDALNEALTAEV 520 (597)
Q Consensus 477 QLtlLqre~~~L~aEN~ELK~RLqaLEqQaqLrdALnEaLkeEV 520 (597)
+|..|-.+...++.+..+|...|+.++.|-.-.+.+.+.+.++|
T Consensus 13 kI~~L~~~v~~~e~~Q~~ldq~Ld~Ie~QQ~ELe~~L~~~E~~v 56 (64)
T 3t97_C 13 KITSLHREVEKVKLDQKRLDQELDFILSQQKELEDLLSPLEESV 56 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHTTTTTTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444555555666666666666655555555554444444
No 335
>4dyl_A Tyrosine-protein kinase FES/FPS; structural genomics, structural genomics consortium, BCR, CR associated substrate, transferase; 2.18A {Homo sapiens}
Probab=24.54 E-value=5.8e+02 Score=26.07 Aligned_cols=35 Identities=20% Similarity=0.153 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCC
Q 007579 499 LQAMEQQAQLRDALNEALTAEVRRLKVATQEMASE 533 (597)
Q Consensus 499 LqaLEqQaqLrdALnEaLkeEVqrLK~a~gEi~~~ 533 (597)
|+.+.++++.....-..|.++++-|+.++.++...
T Consensus 361 ~~e~~~~~~~~~~~~~~~~~q~~~~~~~~~~~~~~ 395 (406)
T 4dyl_A 361 LQEALQGLQVALCSQAKLQAQQELLQTKLEHLGPG 395 (406)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTS
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhcCCC
Confidence 34444555555555667777888888888888654
No 336
>4e81_A Chaperone protein DNAK; chaperone; 1.90A {Escherichia coli} PDB: 3dpp_A* 3dpq_A* 3qnj_A 3dpo_A 1dkz_A 1dky_A 1dkx_A 1bpr_A 2bpr_A 1dg4_A
Probab=24.46 E-value=3.3e+02 Score=25.86 Aligned_cols=11 Identities=18% Similarity=0.498 Sum_probs=7.5
Q ss_pred cChHHHhhhcc
Q 007579 411 FSGAELKKIMA 421 (597)
Q Consensus 411 ~s~~E~KKim~ 421 (597)
.+++|..+.+.
T Consensus 119 Ls~eeI~~m~~ 129 (219)
T 4e81_A 119 LNEDEIQKMVR 129 (219)
T ss_dssp CCHHHHHHHHH
T ss_pred ccHHHHHHHHH
Confidence 66777777664
No 337
>1zvu_A Topoisomerase IV subunit A; beta-pinwheel, ATPase, supercoiling, decatenation, DNA bindi topology; 3.00A {Escherichia coli}
Probab=24.43 E-value=5.4e+02 Score=29.37 Aligned_cols=45 Identities=13% Similarity=0.164 Sum_probs=37.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 007579 485 SVGLTNQNNELKFRLQAMEQQAQLRDALNEALTAEVRRLKVATQE 529 (597)
Q Consensus 485 ~~~L~aEN~ELK~RLqaLEqQaqLrdALnEaLkeEVqrLK~a~gE 529 (597)
...|..|..+|..++..|+.-+.-...+...+++|+..++...|.
T Consensus 404 ~~kl~~E~~eL~~~i~~l~~iL~~~~~l~~~i~~EL~~i~~kygd 448 (716)
T 1zvu_A 404 EMKIRGEQSELEKERDQLQGILASERKMNNLLKKELQADAQAYGD 448 (716)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhCC
Confidence 557778888888888888877777778889999999999998875
No 338
>2b5u_A Colicin E3; high resolution colicin E3, ribosome inactivation, ribosome inhibitor, hydrolase; HET: CIT; 2.30A {Escherichia coli} SCOP: b.101.1.1 b.110.1.1 h.4.9.1 PDB: 1jch_A* 1ujw_B* 2ysu_B 1e44_B 2xfz_Y* 2xg1_Y*
Probab=24.41 E-value=5.9e+02 Score=28.27 Aligned_cols=16 Identities=13% Similarity=0.237 Sum_probs=7.8
Q ss_pred HHHHHHHHHHHHHHHH
Q 007579 457 ISELEHKVQTLQTEAT 472 (597)
Q Consensus 457 IeELE~KVq~LQtEN~ 472 (597)
++..|++++.++.|..
T Consensus 316 ~~~Aer~~e~a~ael~ 331 (551)
T 2b5u_A 316 VEAAERNYERARAELN 331 (551)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4555555554444433
No 339
>3ljm_A Coil Ser L9C; de novo design, three stranded coiled coil, APO, de novo Pro; 1.36A {Synthetic} PDB: 2jgo_A 1cos_A 3h5g_A 3h5f_A 3pbj_A 2x6p_C 1coi_A
Probab=24.29 E-value=1.1e+02 Score=21.66 Aligned_cols=23 Identities=26% Similarity=0.475 Sum_probs=10.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 007579 481 LQRDSVGLTNQNNELKFRLQAME 503 (597)
Q Consensus 481 Lqre~~~L~aEN~ELK~RLqaLE 503 (597)
|++.+..|......|..+|++||
T Consensus 6 lekkcaalesklqalekkleale 28 (31)
T 3ljm_A 6 LEKKCAALESKLQALEKKLEALE 28 (31)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444444444444443
No 340
>4dnd_A Syntaxin-10, SYN10; structural genomics, protein structure initiative, nysgrc, P biology, NEW YORK structural genomics research consortium; HET: MSE; 1.40A {Homo sapiens} PDB: 1lvf_A
Probab=24.07 E-value=2.7e+02 Score=24.97 Aligned_cols=22 Identities=23% Similarity=0.250 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHh
Q 007579 506 AQLRDALNEALTAEVRRLKVAT 527 (597)
Q Consensus 506 aqLrdALnEaLkeEVqrLK~a~ 527 (597)
+.-|......++.+|..+|..+
T Consensus 107 i~~Rr~fV~~~r~~I~~mk~~l 128 (130)
T 4dnd_A 107 LQERKVFVERMREAVQEMKDHM 128 (130)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHh
Confidence 3345566677778888887654
No 341
>3ibp_A Chromosome partition protein MUKB; structural maintenance of chromosomes, SMC, condensin, chromosome segregation, hinge, dimerization domain; 3.10A {Escherichia coli}
Probab=24.00 E-value=1.6e+02 Score=30.38 Aligned_cols=53 Identities=23% Similarity=0.319 Sum_probs=35.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Q 007579 474 LSAQLTLLQRDSVGLTNQNNELKFRLQAMEQQAQLRDALNEALTAEVRRLKVATQEM 530 (597)
Q Consensus 474 LsaQLtlLqre~~~L~aEN~ELK~RLqaLEqQaqLrdALnEaLkeEVqrLK~a~gEi 530 (597)
|..+++.+......|..+-.+|+++++.|+.++..+-+..++| .+|+...|+-
T Consensus 8 l~~~~~~~~e~r~~lr~~~eql~~~i~~L~~~ap~W~~aq~al----~rL~eq~g~~ 60 (302)
T 3ibp_A 8 LSDSVSNAREERMALRQEQEQLQSRIQSLMQRAPVWLAAQNSL----NQLSEQCGEE 60 (302)
T ss_dssp ---CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHTTCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHChHHHHHHHHH----HHHHHHhCCc
Confidence 3444444555556666677788888888888887777777776 5777777653
No 342
>2qyw_A Vesicle transport through interaction with T-SNAR homolog; HABC domain, protein transport, endocytosis; 2.00A {Mus musculus} PDB: 2v8s_V
Probab=23.85 E-value=2.2e+02 Score=24.34 Aligned_cols=27 Identities=15% Similarity=0.332 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007579 451 ERKMRYISELEHKVQTLQTEATTLSAQ 477 (597)
Q Consensus 451 eRKKqYIeELE~KVq~LQtEN~tLsaQ 477 (597)
+.|++.|.+.|..+...+.-...+.-+
T Consensus 45 e~rk~~i~~ie~~ldEA~eLl~qMelE 71 (102)
T 2qyw_A 45 EEKKKLVRDFDEKQQEANETLAEMEEE 71 (102)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555556666666665544444443333
No 343
>3umh_A Amyloid beta A4 protein; metal binding site, metal binding, cell surface, secretory P metal binding protein; 2.00A {Homo sapiens} SCOP: a.47.4.1 PDB: 3umi_A 3umk_A 1rw6_A 3nyl_A 3nyj_A 1tkn_A
Probab=23.73 E-value=5.3e+02 Score=25.35 Aligned_cols=71 Identities=18% Similarity=0.200 Sum_probs=35.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 007579 454 MRYISELEHKVQTLQTEATTLSAQLTLLQRDSVGLTNQNNELKFRLQAMEQQAQLRDALNEALTAEVRRLKVAT 527 (597)
Q Consensus 454 KqYIeELE~KVq~LQtEN~tLsaQLtlLqre~~~L~aEN~ELK~RLqaLEqQaqLrdALnEaLkeEVqrLK~a~ 527 (597)
++-++|+|.+++.|..- .=++-+...+..+..|..|+..-+++|.+. .+..+...||+.-+.-+.....++
T Consensus 42 mkEW~eae~q~k~l~ka--dkk~~~~rFQ~~v~aLE~E~~~ErqqL~et-H~qRV~a~ln~rrr~Ale~y~~AL 112 (211)
T 3umh_A 42 MREWEEAERQAKNLPKA--DKKAVIQHFQEKVESLEQEAANERQQLVET-HMARVEAMLNDRRRLALENYITAL 112 (211)
T ss_dssp HHHHHHHHHTTSSSCHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcchh--HHHHHHHHHHHHHHHHhhhhHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44556666666665442 222334445556666666666666666554 223333344444333333333333
No 344
>3m0d_C TNF receptor-associated factor 1; trimeric helix coiled coiled, acetylation, alternative splic apoptosis, coiled coil, cytoplasm; 2.80A {Homo sapiens}
Probab=23.68 E-value=2.8e+02 Score=22.05 Aligned_cols=54 Identities=19% Similarity=0.178 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007579 472 TTLSAQLTLLQRDSVGLTNQNNELKFRLQAMEQQAQLRDALNEALTAEVRRLKV 525 (597)
Q Consensus 472 ~tLsaQLtlLqre~~~L~aEN~ELK~RLqaLEqQaqLrdALnEaLkeEVqrLK~ 525 (597)
+.|..++..++.-...+..+-..+...+.++.+|..+-....+.|+..|.+|..
T Consensus 9 ~~le~kl~~lEnIv~~l~~eve~~~~~lea~~rq~~~d~~~Ie~Le~kv~~l~~ 62 (65)
T 3m0d_C 9 AELEGKLRVFENIVAVLNKEVEASHLALATSIHQSQLDRERILSLEQRVVELQQ 62 (65)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHh
Confidence 344555555555443333333333444444546666555666667655666554
No 345
>3ilw_A DNA gyrase subunit A; DNA topology, topoisomerase, antibiotic resistance, breakage-reunion domain, struct genomics; HET: DNA; 1.60A {Mycobacterium tuberculosis} SCOP: e.11.1.0 PDB: 3ifz_A*
Probab=23.59 E-value=6.7e+02 Score=27.19 Aligned_cols=45 Identities=4% Similarity=0.081 Sum_probs=35.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 007579 485 SVGLTNQNNELKFRLQAMEQQAQLRDALNEALTAEVRRLKVATQE 529 (597)
Q Consensus 485 ~~~L~aEN~ELK~RLqaLEqQaqLrdALnEaLkeEVqrLK~a~gE 529 (597)
...|..|..+|+.++..|+.-+.-...+.+.+++|+..++...|.
T Consensus 418 ~~kl~~E~~~l~~~i~~l~~iL~~~~~~~~~i~~el~~i~~~yg~ 462 (470)
T 3ilw_A 418 RQRIIDDLAKIEAEIADLEDILAKPERQRGIVRDELAEIVDRHGD 462 (470)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhCC
Confidence 456677778888888888776666667888899999999988873
No 346
>3uun_A Dystrophin; triple helical, cell structure and stability, cytoskeletal, structural protein; 2.30A {Homo sapiens}
Probab=23.24 E-value=2.9e+02 Score=22.08 Aligned_cols=74 Identities=9% Similarity=0.148 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007579 454 MRYISELEHKVQTLQTEATTLSAQLTLLQRDSVGLTN-------QNNELKFRLQAMEQQAQLRDALNEALTAEVRRLKVA 526 (597)
Q Consensus 454 KqYIeELE~KVq~LQtEN~tLsaQLtlLqre~~~L~a-------EN~ELK~RLqaLEqQaqLrdALnEaLkeEVqrLK~a 526 (597)
...+..+-.+.+.|+.+.......|..+......|.. +-..|+.+|..|... .+.|...+.+-..+|..+
T Consensus 35 ~~~v~~~l~~h~~l~~ei~~~~~~v~~~~~~g~~L~~~~~~~~~~~~~i~~~l~~l~~r---w~~L~~~~~~R~~~Le~a 111 (119)
T 3uun_A 35 VEVVKDQFHTHEGYMMDLTAHQGRVGNILQLGSKLIGTGKLSEDEETEVQEQMNLLNSR---WECLRVASMEKQSNLHRV 111 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSCHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHH
Q ss_pred hccc
Q 007579 527 TQEM 530 (597)
Q Consensus 527 ~gEi 530 (597)
+.+.
T Consensus 112 L~~~ 115 (119)
T 3uun_A 112 LMDL 115 (119)
T ss_dssp HHHH
T ss_pred HHHH
No 347
>2b5u_A Colicin E3; high resolution colicin E3, ribosome inactivation, ribosome inhibitor, hydrolase; HET: CIT; 2.30A {Escherichia coli} SCOP: b.101.1.1 b.110.1.1 h.4.9.1 PDB: 1jch_A* 1ujw_B* 2ysu_B 1e44_B 2xfz_Y* 2xg1_Y*
Probab=23.20 E-value=8e+02 Score=27.23 Aligned_cols=22 Identities=18% Similarity=0.086 Sum_probs=11.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHh
Q 007579 506 AQLRDALNEALTAEVRRLKVAT 527 (597)
Q Consensus 506 aqLrdALnEaLkeEVqrLK~a~ 527 (597)
+..+.++.+++++|+..-+.++
T Consensus 404 v~~~~a~~d~~~~~~s~~~~~l 425 (551)
T 2b5u_A 404 VNNKQAAFDAAAKEKSDADAAL 425 (551)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHhhcccchhhhh
Confidence 4444555666666665544433
No 348
>3tq2_A KE1; parallel three helix bundle, de novo protein; 1.10A {Synthetic}
Probab=22.91 E-value=1.5e+02 Score=21.69 Aligned_cols=32 Identities=28% Similarity=0.257 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007579 493 NELKFRLQAMEQQAQLRDALNEALTAEVRRLK 524 (597)
Q Consensus 493 ~ELK~RLqaLEqQaqLrdALnEaLkeEVqrLK 524 (597)
..||.++.+|..|..+.-....+|++.|..|+
T Consensus 4 salkekvsalkeqflmlmfkvsalkekvsalk 35 (36)
T 3tq2_A 4 SALKEKVSALKEQFLMLMFKVSALKEKVSALK 35 (36)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 34666777776666666566667766666554
No 349
>3vmx_A Voltage-gated hydrogen channel 1; coiled-coil, ION channel, ION transport, membrane protein; 1.45A {Mus musculus}
Probab=22.82 E-value=2.5e+02 Score=22.06 Aligned_cols=36 Identities=22% Similarity=0.311 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 007579 486 VGLTNQNNELKFRLQAMEQQAQLRDALNEALTAEVRRLKVATQ 528 (597)
Q Consensus 486 ~~L~aEN~ELK~RLqaLEqQaqLrdALnEaLkeEVqrLK~a~g 528 (597)
..|..-|..|-.+++.|+..+--. ..||+||+..+-
T Consensus 7 ~kLKe~n~~L~~kv~~Le~~c~~~-------eQEieRL~~LLk 42 (48)
T 3vmx_A 7 LRLKQINIQLATKIQHLEFSCSEK-------EQEIERLNKLLK 42 (48)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHccHH-------HHHHHHHHHHHH
Confidence 334444444555555554443322 245556655543
No 350
>2zvf_A Alanyl-tRNA synthetase; C-terminal, oligomerization domain, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase, nucleotide-binding; 3.20A {Archaeoglobus fulgidus}
Probab=22.74 E-value=75 Score=28.31 Aligned_cols=47 Identities=11% Similarity=0.112 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007579 455 RYISELEHKVQTLQTEA----TTLSAQLTLLQRDSVGLTNQNNELKFRLQA 501 (597)
Q Consensus 455 qYIeELE~KVq~LQtEN----~tLsaQLtlLqre~~~L~aEN~ELK~RLqa 501 (597)
+|+.+.+..+..+.... .+|..++..|+.++..|..+..+|+.++..
T Consensus 7 ~~~~~~~~~l~~~a~~Lk~~~~~l~~~v~~l~~e~k~l~ke~~~l~~~~a~ 57 (171)
T 2zvf_A 7 EAVEEMERLLREASSILRVEPAKLPKTVERFFEEWKDQRKEIERLKSVIAD 57 (171)
T ss_dssp HHHHHHHHHHHHHHHTTTCCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555555554443322 245555655555555555555555554433
No 351
>3ghg_C Fibrinogen gamma chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 1deq_C
Probab=22.64 E-value=2.4e+02 Score=30.10 Aligned_cols=30 Identities=17% Similarity=0.176 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 007579 500 QAMEQQAQLRDALNEALTAEVRRLKVATQE 529 (597)
Q Consensus 500 qaLEqQaqLrdALnEaLkeEVqrLK~a~gE 529 (597)
..|+..+...+.....|+.-|..|.....+
T Consensus 108 ~~l~~~~~~~~~~i~~L~~~v~~l~~~~~~ 137 (411)
T 3ghg_C 108 RYLQEIYNSNNQKIVNLKEKVAQLEAQCQE 137 (411)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTSCS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 333334444445556666677777666554
No 352
>4e17_B Catenin alpha-1; four helix bundle, cell adhesion; 2.30A {Mus musculus}
Probab=22.29 E-value=32 Score=26.14 Aligned_cols=12 Identities=42% Similarity=0.830 Sum_probs=10.9
Q ss_pred hhhHHHHHHhcc
Q 007579 262 EVVDDLFSAYMN 273 (597)
Q Consensus 262 e~~ddlf~~Ymn 273 (597)
.|+-|||++||+
T Consensus 26 qALQdLlseY~~ 37 (40)
T 4e17_B 26 QALQDLLSEYMG 37 (40)
T ss_dssp HHHHHHHHHHHC
T ss_pred HHHHHHHHHHhc
Confidence 689999999996
No 353
>3vem_A Helicase protein MOM1; coiled-coil, hendecad, transcriptional gene silencing, siRNA nucleus, chromatin, transcription; 3.20A {Arabidopsis thaliana}
Probab=22.25 E-value=3.8e+02 Score=24.23 Aligned_cols=28 Identities=29% Similarity=0.297 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007579 451 ERKMRYISELEHKVQTLQTEATTLSAQL 478 (597)
Q Consensus 451 eRKKqYIeELE~KVq~LQtEN~tLsaQL 478 (597)
++|++...|+|+++..+..+-..+..++
T Consensus 57 ~kklqLkse~e~E~ae~k~KYD~~lqe~ 84 (115)
T 3vem_A 57 EKKSILKAELERKMAEVQAEFRRKFHEV 84 (115)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566777777777766655555444433
No 354
>2z5i_A TM, general control protein GCN4 and tropomyosin alpha-1 chain; coiled coil, actin, troponin, cytoskeleton, cardiomyopathy; 2.10A {Saccharomyces cerevisiae} PDB: 2z5h_A 1kql_A 1mv4_A 2g9j_C
Probab=22.09 E-value=1.9e+02 Score=22.47 Aligned_cols=32 Identities=13% Similarity=0.201 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007579 444 QSAARSKERKMRYISELEHKVQTLQTEATTLS 475 (597)
Q Consensus 444 ESAaRSReRKKqYIeELE~KVq~LQtEN~tLs 475 (597)
+-|-||=.|-++-|++||.++..-+.++..+.
T Consensus 8 efAERsV~KLek~ID~LEdeL~~eKek~~~i~ 39 (52)
T 2z5i_A 8 YHLENEVARLKKLVDDLEDELYAQKLKYKAIS 39 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 33444444444444444444443333333333
No 355
>1hwt_C Protein (heme activator protein); transcription factor, asymmetry, GAL4, complex activator/DNA, gene regulation/DNA complex; HET: DNA; 2.50A {Saccharomyces cerevisiae} SCOP: g.38.1.1 h.1.3.1 PDB: 2hap_C* 1qp9_A* 1pyc_A
Probab=22.03 E-value=47 Score=26.09 Aligned_cols=22 Identities=18% Similarity=0.360 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 007579 453 KMRYISELEHKVQTLQTEATTL 474 (597)
Q Consensus 453 KKqYIeELE~KVq~LQtEN~tL 474 (597)
+..|++.||.+|..|+.....|
T Consensus 56 ~~~~~~~L~~ri~~LE~~l~~l 77 (81)
T 1hwt_C 56 KDNELKKLRERVKSLEKTLSKV 77 (81)
T ss_dssp HHHHHHHHHHHHHHHHTTC---
T ss_pred hHHHHHHHHHHHHHHHHHHHHh
Confidence 5678999999999887665544
No 356
>1gk7_A Vimentin; intermediate filament, heptad repeat; 1.4A {Homo sapiens} SCOP: h.1.20.1 PDB: 3g1e_A
Probab=22.03 E-value=1.1e+02 Score=22.56 Aligned_cols=13 Identities=38% Similarity=0.207 Sum_probs=5.5
Q ss_pred HHHHHHHHHHHHH
Q 007579 487 GLTNQNNELKFRL 499 (597)
Q Consensus 487 ~L~aEN~ELK~RL 499 (597)
.|+.+|..|..+|
T Consensus 24 ~LE~~N~~Le~~i 36 (39)
T 1gk7_A 24 FLEQQNKILLAEL 36 (39)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 3444444444433
No 357
>3qh9_A Liprin-beta-2; coiled-coil, dimerization, structural protein; 2.01A {Homo sapiens}
Probab=22.00 E-value=3.8e+02 Score=22.99 Aligned_cols=17 Identities=24% Similarity=0.448 Sum_probs=6.7
Q ss_pred HHHHHHHHHHHHHHHHH
Q 007579 487 GLTNQNNELKFRLQAME 503 (597)
Q Consensus 487 ~L~aEN~ELK~RLqaLE 503 (597)
+|..|.++|+.++..||
T Consensus 23 ~L~qEi~~Lr~kv~elE 39 (81)
T 3qh9_A 23 ELLQELRHLKIKVEELE 39 (81)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33333344444443333
No 358
>2k48_A Nucleoprotein; viral protein; NMR {Andes virus}
Probab=21.89 E-value=3.8e+02 Score=23.98 Aligned_cols=24 Identities=17% Similarity=0.279 Sum_probs=11.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 007579 457 ISELEHKVQTLQTEATTLSAQLTL 480 (597)
Q Consensus 457 IeELE~KVq~LQtEN~tLsaQLtl 480 (597)
|++|+.++...+.+...-+.+|..
T Consensus 37 ieeLQ~Ei~~~E~QL~iArQKLkd 60 (107)
T 2k48_A 37 LQELQENITAHEQQLVTARQKLKD 60 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555555544444444444333
No 359
>4ath_A MITF, microphthalmia-associated transcription factor; DNA binding protein, melanoma; HET: MSE; 1.95A {Mus musculus}
Probab=21.62 E-value=1.7e+02 Score=24.96 Aligned_cols=31 Identities=16% Similarity=0.272 Sum_probs=25.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007579 455 RYISELEHKVQTLQTEATTLSAQLTLLQRDS 485 (597)
Q Consensus 455 qYIeELE~KVq~LQtEN~tLsaQLtlLqre~ 485 (597)
+.+.++|.+.+.|+..|..|..++.+|+.+.
T Consensus 49 ~r~~e~e~r~k~le~~n~~l~~riqELE~qa 79 (83)
T 4ath_A 49 QRAKDLENRQKKLEHANRHLLLRVQELEMQA 79 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhhhHHHHHHHHHHHHHH
Confidence 4567888899999999999999998887643
No 360
>3rrk_A V-type ATPase 116 kDa subunit; alpha beta fold, proton pump, subunit I/A, V-ATPase, proton; HET: NHE; 2.64A {Meiothermus ruber}
Probab=21.53 E-value=4.3e+02 Score=26.04 Aligned_cols=30 Identities=10% Similarity=0.274 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007579 455 RYISELEHKVQTLQTEATTLSAQLTLLQRD 484 (597)
Q Consensus 455 qYIeELE~KVq~LQtEN~tLsaQLtlLqre 484 (597)
+.+.+|+.+++.|+.+...+..++..+...
T Consensus 226 ~~l~~l~~~i~~l~~~l~~~~~~l~~~~~~ 255 (357)
T 3rrk_A 226 KAAARMKERARLAPEELVGIREEVARLSRE 255 (357)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345666666666666666666665555443
No 361
>1g6u_A Domain swapped dimer; designed three helix bundle, de novo protein; 1.48A {Synthetic} SCOP: k.9.1.1
Probab=21.53 E-value=2.6e+02 Score=21.46 Aligned_cols=6 Identities=17% Similarity=0.540 Sum_probs=2.2
Q ss_pred HHHHHH
Q 007579 516 LTAEVR 521 (597)
Q Consensus 516 LkeEVq 521 (597)
|+..++
T Consensus 39 lksklq 44 (48)
T 1g6u_A 39 LKSKLQ 44 (48)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 333333
No 362
>2l5g_B Putative uncharacterized protein NCOR2, G protein pathway suppressor 2; GPS2, SMRT, TBL1, CO-repressor, transcription regulator; NMR {Homo sapiens}
Probab=21.49 E-value=1.7e+02 Score=22.37 Aligned_cols=26 Identities=23% Similarity=0.409 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007579 459 ELEHKVQTLQTEATTLSAQLTLLQRD 484 (597)
Q Consensus 459 ELE~KVq~LQtEN~tLsaQLtlLqre 484 (597)
+|-.++.....|++.-..+|+.|+..
T Consensus 6 ~l~qkI~kVdrEI~Kte~kI~~lqkK 31 (42)
T 2l5g_B 6 ELIQNMDRVDREITMVEQQISKLKKK 31 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444554445555555554444443
No 363
>1s94_A S-syntaxin; three helix bundle, structural plasticity, endocytosis-exocy complex; 3.34A {Loligo pealei} SCOP: a.47.2.1
Probab=21.46 E-value=4e+02 Score=24.04 Aligned_cols=71 Identities=7% Similarity=0.290 Sum_probs=36.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 007579 456 YISELEHKVQTLQTEATTLSAQLTLLQRDSVGLT---NQNNELKFRLQAMEQQAQLRDALNEALTAEVRRLKVATQE 529 (597)
Q Consensus 456 YIeELE~KVq~LQtEN~tLsaQLtlLqre~~~L~---aEN~ELK~RLqaLEqQaqLrdALnEaLkeEVqrLK~a~gE 529 (597)
++.+.=.+|+.+..+...|...+..|+..+..+. .....++.+|+.+..+... +...++..|+.|+....+
T Consensus 37 ~m~~F~~~v~~I~~~i~~i~~~v~~l~~~~~~~L~~~~~~~~~k~~le~l~~~i~~---~a~~ik~~Lk~l~~~~~~ 110 (180)
T 1s94_A 37 FMEEFFEQVEEIRAMIDKISDNVDAVKKKHSDILSAPQTDDQMKEELEELMTDIKR---TANKVRGKLKTIELNIEQ 110 (180)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC-------CHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHh
Confidence 4445556666666666666666666665544422 2445667777777655332 233344455555554433
No 364
>3d5k_A OPRM, outer membrane protein OPRM; channel, beta-alpha-barrel, antibiotic RES lipoprotein, palmitate, transmemb transport; 2.40A {Pseudomonas aeruginosa} PDB: 1wp1_A
Probab=21.28 E-value=6.1e+02 Score=25.16 Aligned_cols=28 Identities=25% Similarity=-0.031 Sum_probs=13.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcccc
Q 007579 503 EQQAQLRDALNEALTAEVRRLKVATQEMA 531 (597)
Q Consensus 503 EqQaqLrdALnEaLkeEVqrLK~a~gEi~ 531 (597)
+-+..+.++..+.+. -...|..++|.-.
T Consensus 423 ~a~~~~~~a~~~~~~-a~~~L~~~~G~~~ 450 (474)
T 3d5k_A 423 TAQQQLITDRLNQLT-SEVNLYKALGGGW 450 (474)
T ss_dssp HHHHHHHHHHHHHHH-HHHHHHHHHTCSC
T ss_pred HHHHHHHHHHHHHHH-HHHHHHHHhCCCC
Confidence 333444444444443 2335666777533
No 365
>2aze_A Transcription factor DP-1; coiled coil, beta sandwich, cell cycle, transcription; 2.55A {Homo sapiens} SCOP: e.63.1.1
Probab=21.20 E-value=3e+02 Score=25.98 Aligned_cols=18 Identities=17% Similarity=0.143 Sum_probs=10.6
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 007579 450 KERKMRYISELEHKVQTL 467 (597)
Q Consensus 450 ReRKKqYIeELE~KVq~L 467 (597)
=++|++|+.||+.+...+
T Consensus 21 I~~K~~~LqeL~~Q~vaf 38 (155)
T 2aze_A 21 IKQKQSQLQELILQQIAF 38 (155)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 346667777666654433
No 366
>1uur_A Stata protein, STAT protein; transcription activator, SH2, signal transduction, transducer, transcription factor; HET: PTR; 2.7A {Dictyostelium discoideum} SCOP: a.47.1.1 b.2.5.5 d.93.1.1 PDB: 1uus_A*
Probab=20.88 E-value=8.3e+02 Score=26.54 Aligned_cols=62 Identities=19% Similarity=0.214 Sum_probs=31.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 007579 465 QTLQTEATTLSAQLTLLQRDSVGLTN----QNNELKFRLQAMEQQAQLRDALNEALTAEVRRLKVAT 527 (597)
Q Consensus 465 q~LQtEN~tLsaQLtlLqre~~~L~a----EN~ELK~RLqaLEqQaqLrdALnEaLkeEVqrLK~a~ 527 (597)
+.|+.+-.+|+.++..=..+...|.. |=.+|+ +|..|-+++.+.-...+.|..|++.|-...
T Consensus 55 ~~l~~~~~~~~~~~~~e~~~l~~~~~~~il~p~~l~-~l~~l~q~L~~~~~~l~~l~~el~~~l~~~ 120 (473)
T 1uur_A 55 KSLSQKQITLSGQMNTEMSALDATKKGMILEPTDLA-KLFALKQDLQIQFKQLSLLHNEIQSILNPQ 120 (473)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcccCChHHHh-HHHHHHHHhHhhhhHHHHHHHHHHHHHhcc
Confidence 33777777777776543333333332 222233 444444444444445555667777665544
No 367
>1s1c_X RHO-associated, coiled-coil containing protein kinase 1; GTPase, RHO kinase, ROCK, signaling protein; HET: GNP; 2.60A {Homo sapiens} SCOP: h.1.27.1
Probab=20.74 E-value=3.7e+02 Score=22.41 Aligned_cols=17 Identities=29% Similarity=0.589 Sum_probs=6.6
Q ss_pred HHHHHHHHHHHHHHHHH
Q 007579 474 LSAQLTLLQRDSVGLTN 490 (597)
Q Consensus 474 LsaQLtlLqre~~~L~a 490 (597)
|...|..|..++..|..
T Consensus 4 L~k~i~~l~~E~eel~~ 20 (71)
T 1s1c_X 4 LTKDIEILRRENEELTE 20 (71)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33444444333333333
No 368
>3rrk_A V-type ATPase 116 kDa subunit; alpha beta fold, proton pump, subunit I/A, V-ATPase, proton; HET: NHE; 2.64A {Meiothermus ruber}
Probab=20.51 E-value=1.9e+02 Score=28.56 Aligned_cols=10 Identities=10% Similarity=0.272 Sum_probs=3.8
Q ss_pred HHHHHHhccc
Q 007579 265 DDLFSAYMNL 274 (597)
Q Consensus 265 ddlf~~Ymnl 274 (597)
+++..++..+
T Consensus 27 ~~vl~~L~~l 36 (357)
T 3rrk_A 27 RELLAELQKA 36 (357)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHc
Confidence 3333333333
No 369
>2l5g_A GPS2 protein, G protein pathway suppressor 2; GPS2, SMRT, TBL1, CO-repressor, transcription regulator; NMR {Homo sapiens}
Probab=20.26 E-value=1e+02 Score=23.20 Aligned_cols=20 Identities=40% Similarity=0.456 Sum_probs=9.2
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 007579 455 RYISELEHKVQTLQTEATTL 474 (597)
Q Consensus 455 qYIeELE~KVq~LQtEN~tL 474 (597)
..|..|+.+++.|+.|...|
T Consensus 15 eQi~~l~~kl~~LkeEKHQL 34 (38)
T 2l5g_A 15 EQILKLEEKLLALQEEKHQL 34 (38)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444443
No 370
>2w6b_A RHO guanine nucleotide exchange factor 7; X-RAY crystallography, phosphoprotein, guanine-nucleotide releasing factor, GIT, PAK, PIX, COOL; 2.80A {Rattus norvegicus}
Probab=20.26 E-value=2e+02 Score=23.20 Aligned_cols=17 Identities=24% Similarity=0.460 Sum_probs=6.9
Q ss_pred HHHHHHHHHHHHHHHHH
Q 007579 460 LEHKVQTLQTEATTLSA 476 (597)
Q Consensus 460 LE~KVq~LQtEN~tLsa 476 (597)
|..+|+.|+.|+..|..
T Consensus 15 LkDqV~eL~qe~k~m~k 31 (56)
T 2w6b_A 15 LKDEVQELRQDNKKMKK 31 (56)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33344444444444433
No 371
>2kho_A Heat shock protein 70; molecular chaperone, HSP70, peptide binding, protein folding, acetylation, ATP-binding, cell inner membrane; NMR {Escherichia coli}
Probab=20.24 E-value=2.2e+02 Score=30.56 Aligned_cols=12 Identities=17% Similarity=0.434 Sum_probs=5.9
Q ss_pred CcChHHHhhhcc
Q 007579 410 EFSGAELKKIMA 421 (597)
Q Consensus 410 ~~s~~E~KKim~ 421 (597)
..+++|.++.+.
T Consensus 506 ~ls~~~i~~~~~ 517 (605)
T 2kho_A 506 GLNEDEIQKMVR 517 (605)
T ss_dssp SCCHHHHHHHHH
T ss_pred CCCHHHHHHHHH
Confidence 345555555443
No 372
>1hs7_A Syntaxin VAM3; UP-and-DOWN three-helix bundle insertion preceding proline in AN alpha-helix, endocytosis/exocytosis complex; NMR {Saccharomyces cerevisiae} SCOP: a.47.2.1
Probab=20.23 E-value=2.7e+02 Score=24.19 Aligned_cols=22 Identities=23% Similarity=0.409 Sum_probs=11.1
Q ss_pred HHHHHHHH-HHHHHHHHHHHHHH
Q 007579 458 SELEHKVQ-TLQTEATTLSAQLT 479 (597)
Q Consensus 458 eELE~KVq-~LQtEN~tLsaQLt 479 (597)
.+|..+|+ .|+.....|..++.
T Consensus 36 ~~LR~~l~~~l~~~~~~L~k~~~ 58 (97)
T 1hs7_A 36 KELRYKIETELIPNCTSVRDKIE 58 (97)
T ss_dssp HHHHHHHHHTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555555 55555555555444
No 373
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=20.19 E-value=92 Score=32.86 Aligned_cols=18 Identities=17% Similarity=0.379 Sum_probs=6.0
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 007579 461 EHKVQTLQTEATTLSAQL 478 (597)
Q Consensus 461 E~KVq~LQtEN~tLsaQL 478 (597)
|.+++.|+.|+..|..++
T Consensus 38 e~e~~~l~~e~~r~~~e~ 55 (434)
T 4b4t_M 38 DNEIRIFRSELQRLSHEN 55 (434)
T ss_dssp ---CHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 333344444444433333
No 374
>2e7s_A RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 3.00A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=20.01 E-value=4.8e+02 Score=24.04 Aligned_cols=46 Identities=9% Similarity=0.167 Sum_probs=26.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007579 457 ISELEHKVQTLQTEATTLSAQLTLLQRDSVGLTNQNNELKFRLQAM 502 (597)
Q Consensus 457 IeELE~KVq~LQtEN~tLsaQLtlLqre~~~L~aEN~ELK~RLqaL 502 (597)
+..|...+.....|...|..++..-+........++..+...|+.|
T Consensus 34 l~~l~~~l~~~~~e~~~L~~~l~eE~~~R~~aE~~~~~ie~ElE~L 79 (135)
T 2e7s_A 34 YNTLKRELSDRDDEVKRLREDIAKENELRTKAEEEADKLNKEVEDL 79 (135)
T ss_dssp HHHHHHHTTTHHHHHHTHHHHHHHTTSHHHHHHHTTHHHHHHHHHH
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444455666666666666555555555555666666666555
No 375
>3thf_A Protein shroom; coiled-coil, anti-parallel, helical, RHO-kinase, actin-bindi protein binding, cytoskeleton regulator; 2.70A {Drosophila melanogaster}
Probab=20.00 E-value=6.1e+02 Score=24.63 Aligned_cols=32 Identities=25% Similarity=0.358 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007579 450 KERKMRYISELEHKVQTLQTEATTLSAQLTLL 481 (597)
Q Consensus 450 ReRKKqYIeELE~KVq~LQtEN~tLsaQLtlL 481 (597)
++||.+.|+-|.+|+..|+.|-..|...+..-
T Consensus 14 ~~Kk~ELi~~L~~kL~~L~~eqe~l~ee~~~N 45 (190)
T 3thf_A 14 KQKMDELIKHLNQKIVSLKREQQTISEECSAN 45 (190)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46677777888888888777777766665443
Done!