Query 007580
Match_columns 597
No_of_seqs 321 out of 2267
Neff 8.7
Searched_HMMs 46136
Date Thu Mar 28 12:32:57 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007580.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/007580hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1237 H+/oligopeptide sympor 100.0 8.3E-57 1.8E-61 489.6 40.0 510 49-579 15-569 (571)
2 COG3104 PTR2 Dipeptide/tripept 100.0 1.3E-37 2.8E-42 323.0 31.1 431 62-575 14-492 (498)
3 PRK10207 dipeptide/tripeptide 100.0 3.7E-34 8.1E-39 311.9 44.2 431 64-576 9-482 (489)
4 TIGR00924 yjdL_sub1_fam amino 100.0 8.2E-34 1.8E-38 308.9 43.5 421 64-574 5-472 (475)
5 PRK09584 tppB putative tripept 100.0 4.7E-32 1E-36 296.8 45.0 428 66-576 18-485 (500)
6 PRK15462 dipeptide/tripeptide 100.0 8.8E-32 1.9E-36 289.4 43.5 425 66-562 6-469 (493)
7 TIGR00926 2A1704 Peptide:H+ sy 100.0 2.3E-28 5.1E-33 271.5 42.8 411 83-573 1-654 (654)
8 PRK03545 putative arabinose tr 99.9 6.9E-24 1.5E-28 225.6 39.9 179 64-278 4-182 (390)
9 TIGR01299 synapt_SV2 synaptic 99.9 4.8E-24 1E-28 239.9 38.9 173 67-275 165-350 (742)
10 PRK05122 major facilitator sup 99.9 1.3E-23 2.8E-28 224.1 38.3 379 66-571 12-390 (399)
11 PRK11551 putative 3-hydroxyphe 99.9 1.8E-23 3.9E-28 223.4 36.8 182 64-281 10-191 (406)
12 PRK14995 methyl viologen resis 99.9 2.3E-23 5E-28 228.6 38.4 181 66-282 3-184 (495)
13 COG2814 AraJ Arabinose efflux 99.9 1.3E-22 2.9E-27 209.3 39.6 182 64-281 8-189 (394)
14 PRK12382 putative transporter; 99.9 5.8E-23 1.3E-27 218.6 37.1 374 70-570 16-389 (392)
15 PRK11646 multidrug resistance 99.9 5.6E-23 1.2E-27 219.4 36.7 172 72-279 13-184 (400)
16 PRK10489 enterobactin exporter 99.9 4.5E-23 9.7E-28 221.4 35.8 371 74-584 22-413 (417)
17 PRK10054 putative transporter; 99.9 8.1E-23 1.8E-27 217.8 36.0 176 67-278 5-180 (395)
18 PRK10504 putative transporter; 99.9 1.2E-22 2.5E-27 221.7 37.9 179 68-282 9-187 (471)
19 PRK15402 multidrug efflux syst 99.9 2.4E-22 5.3E-27 214.9 38.0 181 65-281 9-189 (406)
20 PRK10077 xylE D-xylose transpo 99.9 3.1E-23 6.7E-28 226.6 29.6 185 67-275 10-210 (479)
21 TIGR00903 2A0129 major facilit 99.9 2.3E-22 4.9E-27 211.9 34.9 158 89-282 10-167 (368)
22 TIGR02332 HpaX 4-hydroxyphenyl 99.9 2E-22 4.4E-27 216.0 34.6 182 65-282 4-191 (412)
23 PRK11663 regulatory protein Uh 99.9 7.5E-22 1.6E-26 213.1 38.2 171 69-275 23-193 (434)
24 TIGR00887 2A0109 phosphate:H+ 99.9 8.3E-23 1.8E-27 224.7 31.2 179 65-273 12-218 (502)
25 PRK09705 cynX putative cyanate 99.9 6.2E-22 1.4E-26 210.9 35.7 151 86-273 26-177 (393)
26 TIGR00900 2A0121 H+ Antiporter 99.9 6.7E-22 1.5E-26 206.9 35.2 173 74-277 4-176 (365)
27 PRK10213 nepI ribonucleoside t 99.9 3.2E-21 6.8E-26 205.5 40.4 174 65-274 16-189 (394)
28 PRK09874 drug efflux system pr 99.9 1.8E-21 3.9E-26 207.9 37.9 381 70-572 15-400 (408)
29 TIGR00893 2A0114 d-galactonate 99.9 1.2E-21 2.6E-26 206.6 33.5 156 91-281 15-170 (399)
30 PRK10642 proline/glycine betai 99.9 4.8E-21 1E-25 210.0 38.5 175 68-270 15-203 (490)
31 TIGR00892 2A0113 monocarboxyla 99.9 8.8E-22 1.9E-26 213.7 32.3 176 67-279 17-193 (455)
32 PRK15403 multidrug efflux syst 99.9 1E-20 2.2E-25 202.8 39.7 166 81-282 28-193 (413)
33 TIGR00899 2A0120 sugar efflux 99.9 6.6E-21 1.4E-25 200.9 36.2 173 75-282 3-178 (375)
34 TIGR00711 efflux_EmrB drug res 99.9 1.8E-21 4E-26 212.8 33.1 177 70-282 3-179 (485)
35 PRK10091 MFS transport protein 99.9 1.3E-20 2.8E-25 200.0 38.5 177 69-281 3-179 (382)
36 PF07690 MFS_1: Major Facilita 99.9 7.2E-22 1.6E-26 205.8 27.5 171 75-280 2-172 (352)
37 TIGR00879 SP MFS transporter, 99.9 7.9E-22 1.7E-26 213.9 28.8 151 93-275 51-212 (481)
38 TIGR00891 2A0112 putative sial 99.9 4.7E-21 1E-25 203.8 33.4 174 63-272 6-181 (405)
39 TIGR00710 efflux_Bcr_CflA drug 99.9 2.9E-20 6.4E-25 196.6 38.2 179 67-281 3-181 (385)
40 PRK03699 putative transporter; 99.9 1.9E-20 4.1E-25 199.5 36.9 174 66-275 4-178 (394)
41 PRK10406 alpha-ketoglutarate t 99.9 2.6E-20 5.7E-25 201.0 38.2 177 67-271 20-210 (432)
42 TIGR00890 2A0111 Oxalate/Forma 99.9 5E-21 1.1E-25 201.1 31.7 174 68-279 3-176 (377)
43 PRK12307 putative sialic acid 99.9 1.3E-20 2.9E-25 202.6 34.4 166 66-267 15-180 (426)
44 PRK03633 putative MFS family t 99.9 2.7E-20 5.8E-25 197.4 36.1 155 68-258 5-159 (381)
45 cd06174 MFS The Major Facilita 99.9 1.4E-20 3E-25 195.5 32.6 345 73-567 3-349 (352)
46 PRK09952 shikimate transporter 99.9 1.1E-19 2.3E-24 196.5 40.6 178 64-269 17-209 (438)
47 PRK09556 uhpT sugar phosphate 99.9 3.2E-21 7E-26 210.1 28.8 182 67-279 27-211 (467)
48 TIGR00894 2A0114euk Na(+)-depe 99.9 6E-21 1.3E-25 207.9 30.5 149 99-280 70-219 (465)
49 PRK11273 glpT sn-glycerol-3-ph 99.9 5.7E-20 1.2E-24 199.5 37.6 159 91-281 50-209 (452)
50 PRK15011 sugar efflux transpor 99.9 8.5E-20 1.8E-24 194.5 38.1 178 68-281 14-195 (393)
51 KOG0569 Permease of the major 99.9 2.5E-21 5.5E-26 205.6 25.7 379 108-586 63-470 (485)
52 PF00854 PTR2: POT family; In 99.9 1.3E-22 2.9E-27 214.3 16.1 333 136-511 1-370 (372)
53 PRK11652 emrD multidrug resist 99.9 6E-20 1.3E-24 195.5 36.5 180 66-281 5-184 (394)
54 TIGR00895 2A0115 benzoate tran 99.9 2.7E-20 5.9E-25 197.2 32.7 181 65-281 13-193 (398)
55 PRK11195 lysophospholipid tran 99.9 1.7E-19 3.7E-24 192.1 38.8 163 70-272 4-166 (393)
56 PRK03893 putative sialic acid 99.9 2.8E-20 6E-25 204.3 33.5 168 65-268 16-183 (496)
57 PLN00028 nitrate transmembrane 99.9 1.6E-19 3.5E-24 197.1 38.4 175 67-278 34-217 (476)
58 TIGR00898 2A0119 cation transp 99.9 1.8E-20 3.9E-25 206.3 29.9 145 94-276 113-260 (505)
59 PRK10473 multidrug efflux syst 99.9 4.1E-19 9E-24 189.0 38.5 173 73-281 7-179 (392)
60 TIGR00897 2A0118 polyol permea 99.9 5.3E-19 1.2E-23 188.9 39.2 174 63-268 7-181 (402)
61 TIGR00902 2A0127 phenyl propri 99.9 4.2E-19 9.2E-24 188.4 37.9 342 72-565 7-374 (382)
62 COG2271 UhpC Sugar phosphate p 99.9 3.2E-20 6.9E-25 189.2 24.7 173 73-280 29-206 (448)
63 KOG0254 Predicted transporter 99.9 5.3E-20 1.2E-24 202.8 28.3 390 106-587 90-500 (513)
64 PRK11043 putative transporter; 99.9 1.4E-18 3.1E-23 185.4 38.4 165 78-278 15-179 (401)
65 PRK09528 lacY galactoside perm 99.9 2.3E-19 5E-24 192.9 32.4 179 70-279 11-190 (420)
66 PRK15075 citrate-proton sympor 99.9 6.6E-19 1.4E-23 190.2 35.1 176 64-267 10-199 (434)
67 PRK15034 nitrate/nitrite trans 99.9 1.7E-18 3.7E-23 184.8 37.6 189 61-281 23-233 (462)
68 KOG2532 Permease of the major 99.9 2.9E-20 6.3E-25 199.5 24.1 150 99-281 67-217 (466)
69 PRK10133 L-fucose transporter; 99.9 1.6E-18 3.4E-23 187.2 36.9 155 66-253 23-177 (438)
70 TIGR00712 glpT glycerol-3-phos 99.9 2.7E-19 5.8E-24 193.4 30.7 181 68-281 26-207 (438)
71 PF05977 MFS_3: Transmembrane 99.9 6.6E-18 1.4E-22 184.4 40.5 340 70-529 11-371 (524)
72 PRK11102 bicyclomycin/multidru 99.9 3E-18 6.5E-23 181.1 36.7 160 86-281 8-167 (377)
73 PRK08633 2-acyl-glycerophospho 99.9 1.5E-18 3.3E-23 209.5 38.8 154 70-255 10-165 (1146)
74 TIGR00881 2A0104 phosphoglycer 99.9 2.4E-19 5.3E-24 188.4 27.6 155 92-281 17-172 (379)
75 KOG1330 Sugar transporter/spin 99.8 2.4E-20 5.2E-25 191.8 16.6 183 64-282 28-211 (493)
76 TIGR00882 2A0105 oligosacchari 99.8 3.2E-18 6.9E-23 182.5 33.2 178 70-277 3-180 (396)
77 PRK06814 acylglycerophosphoeth 99.8 2.4E-18 5.2E-23 207.5 35.7 145 96-274 42-189 (1140)
78 PRK11128 putative 3-phenylprop 99.8 1.5E-17 3.3E-22 176.4 35.9 155 78-272 13-171 (382)
79 PRK11010 ampG muropeptide tran 99.8 3.8E-17 8.1E-22 179.0 39.4 181 58-277 5-192 (491)
80 TIGR00889 2A0110 nucleoside tr 99.8 9.7E-17 2.1E-21 172.3 38.3 381 73-574 6-406 (418)
81 TIGR00886 2A0108 nitrite extru 99.8 7.5E-18 1.6E-22 177.1 27.9 166 71-272 3-180 (366)
82 TIGR00885 fucP L-fucose:H+ sym 99.8 2.1E-16 4.5E-21 169.2 37.2 173 70-275 4-202 (410)
83 TIGR00792 gph sugar (Glycoside 99.8 3.2E-17 6.9E-22 176.9 29.3 176 79-282 9-196 (437)
84 TIGR00896 CynX cyanate transpo 99.8 4.1E-17 8.9E-22 171.2 29.4 144 90-270 20-165 (355)
85 TIGR00883 2A0106 metabolite-pr 99.8 7.7E-17 1.7E-21 170.3 31.7 165 81-273 5-184 (394)
86 KOG0255 Synaptic vesicle trans 99.8 5.2E-18 1.1E-22 187.6 23.1 140 98-275 111-250 (521)
87 COG2223 NarK Nitrate/nitrite t 99.8 1.2E-16 2.5E-21 163.6 30.6 372 65-574 10-405 (417)
88 PRK11902 ampG muropeptide tran 99.8 1.5E-15 3.2E-20 162.3 38.6 166 74-274 4-176 (402)
89 TIGR00806 rfc RFC reduced fola 99.8 4.8E-16 1E-20 163.3 31.4 159 70-267 28-187 (511)
90 PF06609 TRI12: Fungal trichot 99.8 6.5E-16 1.4E-20 168.5 32.5 152 90-278 64-215 (599)
91 TIGR01301 GPH_sucrose GPH fami 99.8 3.2E-15 7E-20 160.8 36.8 197 71-284 6-222 (477)
92 PF00083 Sugar_tr: Sugar (and 99.8 1.3E-22 2.7E-27 220.1 -21.5 379 106-584 47-450 (451)
93 TIGR00901 2A0125 AmpG-related 99.8 8.2E-16 1.8E-20 161.3 30.8 161 88-281 6-179 (356)
94 COG0738 FucP Fucose permease [ 99.7 4.5E-15 9.7E-20 151.1 30.6 173 70-275 14-205 (422)
95 KOG2504 Monocarboxylate transp 99.7 9.3E-15 2E-19 159.0 30.9 400 72-570 45-476 (509)
96 COG2807 CynX Cyanate permease 99.7 6E-14 1.3E-18 140.9 33.5 173 68-278 11-184 (395)
97 COG2271 UhpC Sugar phosphate p 99.7 1.5E-16 3.2E-21 162.6 14.3 180 70-281 253-435 (448)
98 KOG3764 Vesicular amine transp 99.7 2.9E-15 6.2E-20 151.4 22.4 151 99-283 100-250 (464)
99 KOG0252 Inorganic phosphate tr 99.7 3.1E-16 6.8E-21 160.9 15.5 139 102-268 81-234 (538)
100 PRK09848 glucuronide transport 99.7 4.6E-14 1E-18 153.0 32.8 156 71-252 10-174 (448)
101 TIGR02718 sider_RhtX_FptX side 99.7 1.7E-13 3.7E-18 145.7 36.4 177 71-279 3-183 (390)
102 TIGR00805 oat sodium-independe 99.7 1E-14 2.3E-19 163.8 27.9 208 65-279 28-280 (633)
103 KOG2615 Permease of the major 99.7 1.3E-14 2.7E-19 146.0 24.6 116 103-254 66-181 (451)
104 TIGR00788 fbt folate/biopterin 99.7 2.2E-14 4.8E-19 156.1 28.4 173 70-275 27-204 (468)
105 KOG0253 Synaptic vesicle trans 99.7 1.6E-14 3.5E-19 144.1 23.8 146 86-268 94-239 (528)
106 PRK10429 melibiose:sodium symp 99.7 6.6E-14 1.4E-18 152.9 31.1 178 76-282 13-203 (473)
107 PRK09669 putative symporter Ya 99.7 9.9E-14 2.1E-18 150.3 31.0 178 76-281 16-205 (444)
108 PF03825 Nuc_H_symport: Nucleo 99.6 1.3E-12 2.9E-17 138.6 34.6 117 74-219 7-123 (400)
109 PF01306 LacY_symp: LacY proto 99.6 1.8E-13 3.8E-18 143.3 27.0 369 70-574 8-404 (412)
110 PF13347 MFS_2: MFS/sugar tran 99.6 8.5E-14 1.8E-18 150.1 24.1 178 79-282 11-200 (428)
111 PTZ00207 hypothetical protein; 99.6 6.7E-12 1.4E-16 138.1 39.0 183 64-281 23-206 (591)
112 KOG2533 Permease of the major 99.6 7.9E-13 1.7E-17 142.7 28.6 152 96-282 72-229 (495)
113 PRK11462 putative transporter; 99.6 8.7E-12 1.9E-16 135.6 34.8 180 76-282 16-206 (460)
114 PRK10642 proline/glycine betai 99.5 5.3E-13 1.1E-17 146.5 21.9 179 67-277 248-427 (490)
115 PRK09556 uhpT sugar phosphate 99.5 6.9E-13 1.5E-17 144.7 20.2 175 70-277 259-446 (467)
116 PRK15011 sugar efflux transpor 99.5 4.6E-12 9.9E-17 135.0 23.3 163 79-277 226-388 (393)
117 PF11700 ATG22: Vacuole efflux 99.5 2.2E-10 4.8E-15 124.1 36.4 91 468-576 383-473 (477)
118 TIGR01299 synapt_SV2 synaptic 99.4 5E-12 1.1E-16 143.1 21.2 131 111-277 601-731 (742)
119 PF03209 PUCC: PUCC protein; 99.4 6.4E-10 1.4E-14 114.8 33.9 376 96-567 6-395 (403)
120 PRK03699 putative transporter; 99.4 7.1E-12 1.5E-16 133.6 20.0 173 70-278 206-378 (394)
121 PRK09952 shikimate transporter 99.4 1.8E-11 3.9E-16 132.4 22.6 182 66-278 247-431 (438)
122 PRK05122 major facilitator sup 99.4 1.5E-11 3.2E-16 131.1 21.4 166 79-282 226-391 (399)
123 cd06174 MFS The Major Facilita 99.4 1.3E-11 2.9E-16 127.8 20.2 171 71-276 177-348 (352)
124 TIGR00890 2A0111 Oxalate/Forma 99.4 8.1E-12 1.8E-16 131.0 18.4 167 72-272 208-374 (377)
125 TIGR00899 2A0120 sugar efflux 99.4 2.4E-11 5.1E-16 128.0 21.7 158 83-276 213-370 (375)
126 TIGR00889 2A0110 nucleoside tr 99.4 1.3E-11 2.8E-16 132.6 19.6 174 76-281 215-403 (418)
127 COG2211 MelB Na+/melibiose sym 99.4 3.3E-10 7.1E-15 120.1 29.2 184 72-282 15-209 (467)
128 PRK11273 glpT sn-glycerol-3-ph 99.4 1.8E-11 3.8E-16 133.0 19.9 175 70-277 254-432 (452)
129 PRK09874 drug efflux system pr 99.4 2.7E-11 5.8E-16 129.3 20.3 165 79-278 229-396 (408)
130 TIGR00880 2_A_01_02 Multidrug 99.4 4.7E-12 1E-16 112.9 11.9 132 112-278 5-136 (141)
131 PRK11663 regulatory protein Uh 99.4 3E-11 6.4E-16 130.6 20.4 178 70-280 244-424 (434)
132 TIGR00893 2A0114 d-galactonate 99.4 3.9E-11 8.4E-16 126.4 20.9 178 70-276 216-395 (399)
133 KOG4686 Predicted sugar transp 99.4 4.3E-12 9.2E-17 122.6 11.6 156 70-257 45-200 (459)
134 TIGR00883 2A0106 metabolite-pr 99.4 1.3E-11 2.8E-16 130.3 16.4 167 69-268 219-389 (394)
135 PRK03893 putative sialic acid 99.4 2.8E-11 6.2E-16 132.8 19.0 151 86-269 292-442 (496)
136 PRK11551 putative 3-hydroxyphe 99.3 6.6E-11 1.4E-15 126.4 21.3 167 75-277 226-393 (406)
137 PRK09705 cynX putative cyanate 99.3 1.2E-10 2.6E-15 124.1 22.8 176 71-283 207-384 (393)
138 PRK03545 putative arabinose tr 99.3 1.4E-10 3E-15 123.5 22.9 170 75-280 211-380 (390)
139 PRK09528 lacY galactoside perm 99.3 2.2E-11 4.8E-16 130.9 16.8 161 83-278 237-401 (420)
140 PRK12382 putative transporter; 99.3 5.2E-11 1.1E-15 126.7 19.0 161 80-278 227-387 (392)
141 TIGR00902 2A0127 phenyl propri 99.3 1.8E-10 4E-15 122.2 22.5 168 70-275 206-374 (382)
142 PRK10489 enterobactin exporter 99.3 8.6E-11 1.9E-15 126.2 20.2 163 86-283 240-402 (417)
143 TIGR00891 2A0112 putative sial 99.3 4.7E-11 1E-15 126.9 18.0 165 66-264 235-400 (405)
144 PRK15075 citrate-proton sympor 99.3 1.1E-10 2.4E-15 126.1 20.6 161 67-259 236-398 (434)
145 PRK03633 putative MFS family t 99.3 1.9E-10 4.2E-15 121.9 21.2 153 83-274 214-366 (381)
146 TIGR00897 2A0118 polyol permea 99.3 4.4E-10 9.4E-15 120.2 22.4 174 71-277 224-398 (402)
147 KOG2325 Predicted transporter/ 99.3 9.4E-11 2E-15 124.4 16.2 190 62-283 27-232 (488)
148 PRK11010 ampG muropeptide tran 99.3 5.2E-10 1.1E-14 122.8 22.6 171 79-280 232-403 (491)
149 PF11700 ATG22: Vacuole efflux 99.3 4.6E-10 1E-14 121.7 21.8 185 67-278 279-466 (477)
150 TIGR00892 2A0113 monocarboxyla 99.3 1.9E-10 4.1E-15 125.1 18.4 170 70-274 242-415 (455)
151 TIGR00879 SP MFS transporter, 99.2 1.9E-10 4.2E-15 124.6 18.0 189 68-281 283-471 (481)
152 PRK10406 alpha-ketoglutarate t 99.2 7.1E-10 1.5E-14 119.7 22.0 172 75-277 249-421 (432)
153 TIGR01272 gluP glucose/galacto 99.2 1.1E-09 2.3E-14 112.9 20.3 163 68-268 139-303 (310)
154 TIGR00712 glpT glycerol-3-phos 99.2 3.5E-10 7.5E-15 122.4 17.4 179 70-281 252-434 (438)
155 COG2814 AraJ Arabinose efflux 99.2 1.9E-09 4.1E-14 112.0 21.6 177 70-282 212-388 (394)
156 TIGR00881 2A0104 phosphoglycer 99.2 3.6E-10 7.8E-15 118.6 15.6 161 70-262 217-379 (379)
157 KOG2563 Permease of the major 99.2 2.5E-09 5.4E-14 110.8 20.3 162 62-254 38-201 (480)
158 COG2270 Permeases of the major 99.2 8.8E-09 1.9E-13 106.2 23.9 57 473-529 349-405 (438)
159 PRK12307 putative sialic acid 99.2 2E-09 4.4E-14 115.7 20.4 147 84-264 246-392 (426)
160 TIGR02332 HpaX 4-hydroxyphenyl 99.1 1E-09 2.3E-14 117.7 16.9 164 70-268 243-409 (412)
161 PRK15402 multidrug efflux syst 99.1 7.2E-09 1.6E-13 110.8 23.2 170 72-272 218-387 (406)
162 TIGR00900 2A0121 H+ Antiporter 99.1 1.8E-09 4E-14 112.7 17.9 153 71-257 212-365 (365)
163 PRK11128 putative 3-phenylprop 99.1 5.5E-09 1.2E-13 110.8 21.7 165 70-272 206-371 (382)
164 PRK10504 putative transporter; 99.1 4.5E-09 9.8E-14 114.7 21.2 156 71-258 263-418 (471)
165 COG2223 NarK Nitrate/nitrite t 99.1 1.9E-09 4E-14 111.1 16.7 181 70-279 219-400 (417)
166 PLN00028 nitrate transmembrane 99.1 2.4E-09 5.2E-14 117.1 18.6 174 72-280 255-433 (476)
167 TIGR01272 gluP glucose/galacto 99.1 2.3E-08 4.9E-13 103.0 24.6 84 185-274 8-107 (310)
168 PRK10091 MFS transport protein 99.1 8.1E-09 1.8E-13 109.6 21.6 168 73-276 203-372 (382)
169 KOG4686 Predicted sugar transp 99.1 3E-09 6.4E-14 103.2 16.2 174 61-271 256-433 (459)
170 TIGR00882 2A0105 oligosacchari 99.1 4.4E-09 9.5E-14 112.1 19.2 167 75-276 221-391 (396)
171 TIGR02718 sider_RhtX_FptX side 99.1 8.1E-09 1.8E-13 109.8 21.1 172 72-273 211-384 (390)
172 TIGR00894 2A0114euk Na(+)-depe 99.1 6.6E-09 1.4E-13 113.3 20.6 179 66-277 258-447 (465)
173 PF03092 BT1: BT1 family; Int 99.1 4.9E-08 1.1E-12 105.2 26.5 163 91-282 11-177 (433)
174 PRK10077 xylE D-xylose transpo 99.1 7.3E-09 1.6E-13 113.2 20.1 157 94-281 295-458 (479)
175 TIGR00895 2A0115 benzoate tran 99.1 4.6E-09 1E-13 111.1 17.9 149 68-252 249-397 (398)
176 TIGR00711 efflux_EmrB drug res 99.1 4.7E-09 1E-13 114.8 17.9 155 71-256 257-411 (485)
177 PRK11902 ampG muropeptide tran 99.0 2.3E-08 4.9E-13 106.9 22.4 153 91-278 231-388 (402)
178 TIGR00887 2A0109 phosphate:H+ 99.0 3.9E-09 8.4E-14 116.3 16.9 181 69-282 288-490 (502)
179 TIGR00792 gph sugar (Glycoside 99.0 8.4E-09 1.8E-13 111.3 18.5 160 70-258 223-383 (437)
180 KOG2816 Predicted transporter 99.0 1.4E-07 2.9E-12 101.6 27.3 337 89-529 41-394 (463)
181 PRK10133 L-fucose transporter; 99.0 1.8E-08 4E-13 108.9 20.0 160 76-273 265-426 (438)
182 TIGR00896 CynX cyanate transpo 99.0 1.2E-08 2.6E-13 107.0 17.6 150 71-257 199-350 (355)
183 PF05977 MFS_3: Transmembrane 99.0 3.2E-08 6.8E-13 108.6 21.3 167 76-277 225-391 (524)
184 TIGR00710 efflux_Bcr_CflA drug 99.0 4.3E-08 9.3E-13 103.5 21.9 156 78-264 215-370 (385)
185 PRK10054 putative transporter; 99.0 1.1E-08 2.4E-13 109.1 17.5 169 74-277 211-381 (395)
186 PRK10213 nepI ribonucleoside t 99.0 5.9E-08 1.3E-12 103.5 23.0 164 71-271 218-382 (394)
187 PRK14995 methyl viologen resis 99.0 1.1E-08 2.3E-13 112.6 17.6 154 70-255 260-413 (495)
188 PRK08633 2-acyl-glycerophospho 99.0 1.8E-08 4E-13 122.1 20.7 162 72-268 235-398 (1146)
189 PRK11646 multidrug resistance 99.0 2.1E-08 4.6E-13 107.2 18.3 152 87-273 226-381 (400)
190 KOG3626 Organic anion transpor 99.0 2E-07 4.3E-12 103.3 25.9 206 72-285 100-348 (735)
191 COG2270 Permeases of the major 99.0 1.5E-08 3.3E-13 104.5 15.7 172 70-276 253-425 (438)
192 PRK15034 nitrate/nitrite trans 98.9 6.7E-08 1.5E-12 103.8 20.5 184 70-278 253-452 (462)
193 PRK06814 acylglycerophosphoeth 98.9 4.9E-08 1.1E-12 118.3 19.0 184 70-268 226-410 (1140)
194 PRK09848 glucuronide transport 98.9 3.8E-08 8.2E-13 106.8 16.1 162 70-258 229-391 (448)
195 TIGR00903 2A0129 major facilit 98.9 1.5E-07 3.3E-12 99.4 19.8 165 70-276 193-361 (368)
196 TIGR00898 2A0119 cation transp 98.9 5.1E-08 1.1E-12 107.4 16.6 129 113-276 363-491 (505)
197 TIGR00901 2A0125 AmpG-related 98.8 1.1E-07 2.4E-12 99.7 16.9 145 70-239 210-355 (356)
198 PRK11195 lysophospholipid tran 98.8 3.4E-07 7.3E-12 97.6 20.8 158 85-278 221-378 (393)
199 COG2807 CynX Cyanate permease 98.8 4.6E-07 9.9E-12 91.8 19.7 166 70-270 209-375 (395)
200 PF03137 OATP: Organic Anion T 98.8 6E-10 1.3E-14 122.5 -1.2 205 74-286 8-256 (539)
201 KOG0253 Synaptic vesicle trans 98.8 1.1E-07 2.4E-12 95.9 14.3 172 67-275 324-514 (528)
202 PF13347 MFS_2: MFS/sugar tran 98.8 2.8E-07 6.1E-12 99.4 18.9 161 70-258 226-387 (428)
203 PF07690 MFS_1: Major Facilita 98.8 8.2E-08 1.8E-12 99.8 13.7 141 74-246 211-352 (352)
204 KOG0569 Permease of the major 98.8 6.3E-07 1.4E-11 96.1 20.5 193 67-286 267-460 (485)
205 PRK11102 bicyclomycin/multidru 98.8 1.2E-06 2.5E-11 92.5 22.2 144 75-250 200-344 (377)
206 KOG2504 Monocarboxylate transp 98.7 1.2E-07 2.7E-12 103.5 14.9 176 69-280 298-476 (509)
207 PRK11043 putative transporter; 98.7 1.4E-06 3E-11 93.0 22.8 147 82-260 216-362 (401)
208 PRK10473 multidrug efflux syst 98.7 1E-06 2.2E-11 93.7 21.4 69 87-156 221-289 (392)
209 PRK10429 melibiose:sodium symp 98.7 7.7E-07 1.7E-11 97.3 20.0 165 69-258 231-396 (473)
210 PF05631 DUF791: Protein of un 98.7 2.3E-06 4.9E-11 87.4 21.2 154 96-281 60-217 (354)
211 PRK09669 putative symporter Ya 98.7 6.9E-07 1.5E-11 96.8 18.5 159 72-258 232-391 (444)
212 TIGR00885 fucP L-fucose:H+ sym 98.7 1.2E-06 2.6E-11 93.9 19.1 161 72-270 235-402 (410)
213 KOG2532 Permease of the major 98.6 5.6E-07 1.2E-11 97.3 15.8 178 69-279 258-446 (466)
214 TIGR00924 yjdL_sub1_fam amino 98.6 1.3E-06 2.8E-11 95.6 18.7 188 69-281 272-469 (475)
215 PF03825 Nuc_H_symport: Nucleo 98.6 5.4E-06 1.2E-10 88.3 22.1 177 73-279 211-394 (400)
216 PF01306 LacY_symp: LacY proto 98.5 9.3E-06 2E-10 85.6 20.7 177 70-281 221-401 (412)
217 PRK11652 emrD multidrug resist 98.5 1.1E-05 2.4E-10 85.8 21.9 140 88-260 226-365 (394)
218 TIGR00886 2A0108 nitrite extru 98.5 8E-07 1.7E-11 93.2 12.9 138 72-241 228-365 (366)
219 COG0477 ProP Permeases of the 98.5 8.6E-06 1.9E-10 81.5 19.0 143 94-269 26-174 (338)
220 PF06813 Nodulin-like: Nodulin 98.5 1.5E-05 3.3E-10 78.6 18.8 157 67-255 1-157 (250)
221 PRK11462 putative transporter; 98.4 2.4E-05 5.1E-10 85.3 21.5 158 73-258 232-390 (460)
222 KOG3098 Uncharacterized conser 98.4 0.00018 3.9E-09 76.8 26.7 101 111-247 56-156 (461)
223 COG2211 MelB Na+/melibiose sym 98.4 6.8E-06 1.5E-10 87.5 14.5 161 70-257 237-398 (467)
224 KOG3764 Vesicular amine transp 98.3 1.4E-06 3E-11 89.2 8.3 189 62-280 264-454 (464)
225 PRK10207 dipeptide/tripeptide 98.3 1.4E-05 3.1E-10 87.6 16.8 178 78-281 278-477 (489)
226 PRK09584 tppB putative tripept 98.3 2.8E-05 6.1E-10 85.6 18.9 176 80-281 283-480 (500)
227 PRK15403 multidrug efflux syst 98.3 8.6E-05 1.9E-09 79.7 20.8 169 70-270 219-387 (413)
228 KOG3762 Predicted transporter 98.2 0.00013 2.9E-09 77.6 20.9 90 463-570 457-547 (618)
229 TIGR00880 2_A_01_02 Multidrug 98.2 3.8E-05 8.3E-10 67.8 14.6 89 464-570 50-138 (141)
230 PF03209 PUCC: PUCC protein; 98.2 0.00011 2.4E-09 76.5 19.7 168 78-276 217-394 (403)
231 PF01770 Folate_carrier: Reduc 98.2 0.0023 4.9E-08 67.5 29.2 171 70-278 6-180 (412)
232 COG0738 FucP Fucose permease [ 98.2 7.1E-05 1.5E-09 77.3 17.3 155 71-263 238-392 (422)
233 KOG3762 Predicted transporter 98.1 1.3E-05 2.8E-10 85.1 10.1 173 75-283 377-550 (618)
234 PF00083 Sugar_tr: Sugar (and 98.1 2.6E-08 5.6E-13 108.0 -11.4 189 71-286 254-442 (451)
235 PF02487 CLN3: CLN3 protein; 98.0 0.0081 1.8E-07 63.3 29.3 63 463-525 333-395 (402)
236 KOG1330 Sugar transporter/spin 98.0 2.1E-06 4.5E-11 89.7 2.3 124 417-580 96-219 (493)
237 TIGR01301 GPH_sucrose GPH fami 98.0 0.00057 1.2E-08 74.2 20.1 207 63-282 252-473 (477)
238 KOG2533 Permease of the major 98.0 5.6E-05 1.2E-09 82.2 12.3 165 70-267 274-443 (495)
239 TIGR00788 fbt folate/biopterin 98.0 2.9E-05 6.3E-10 84.8 9.6 137 96-257 279-415 (468)
240 KOG0254 Predicted transporter 97.9 0.00032 6.9E-09 77.6 16.3 197 65-284 290-487 (513)
241 PF12832 MFS_1_like: MFS_1 lik 97.8 0.00014 3.1E-09 58.0 9.1 68 76-145 7-74 (77)
242 KOG4332 Predicted sugar transp 97.8 0.00043 9.3E-09 67.4 13.4 154 93-277 60-217 (454)
243 TIGR00805 oat sodium-independe 97.8 0.0005 1.1E-08 77.9 15.5 179 70-255 331-581 (633)
244 PF06963 FPN1: Ferroportin1 (F 97.7 0.097 2.1E-06 56.1 32.7 194 71-277 4-197 (432)
245 KOG0252 Inorganic phosphate tr 97.7 2.7E-05 5.8E-10 81.4 4.5 178 69-278 304-496 (538)
246 KOG0637 Sucrose transporter an 97.5 0.00012 2.7E-09 76.5 6.1 165 69-252 32-202 (498)
247 PF06609 TRI12: Fungal trichot 97.5 0.0018 4E-08 71.7 15.4 156 64-252 305-464 (599)
248 PF05978 UNC-93: Ion channel r 97.5 0.0037 8.1E-08 57.1 14.7 108 109-252 41-148 (156)
249 KOG3574 Acetyl-CoA transporter 97.5 0.058 1.2E-06 55.6 23.5 158 65-249 27-189 (510)
250 TIGR00806 rfc RFC reduced fola 97.4 0.0045 9.8E-08 66.3 15.7 85 416-524 89-173 (511)
251 PRK15462 dipeptide/tripeptide 97.4 0.0069 1.5E-07 66.1 17.6 160 67-252 266-437 (493)
252 PTZ00207 hypothetical protein; 97.3 0.0029 6.3E-08 70.4 13.1 176 70-283 354-555 (591)
253 TIGR00769 AAA ADP/ATP carrier 97.3 0.42 9.2E-06 51.9 32.8 166 68-253 6-189 (472)
254 PF03137 OATP: Organic Anion T 97.1 0.00011 2.3E-09 81.3 0.0 181 70-256 306-515 (539)
255 KOG2615 Permease of the major 97.1 0.0055 1.2E-07 63.1 11.7 151 70-254 261-413 (451)
256 KOG0255 Synaptic vesicle trans 97.0 0.034 7.4E-07 61.6 18.5 176 69-285 322-497 (521)
257 PRK03612 spermidine synthase; 96.9 0.13 2.8E-06 56.8 22.0 154 92-276 37-194 (521)
258 PF06779 DUF1228: Protein of u 96.7 0.018 4E-07 46.5 9.2 64 92-156 14-77 (85)
259 PF00854 PTR2: POT family; In 96.5 0.014 3E-07 61.7 9.8 124 421-576 3-129 (372)
260 KOG2816 Predicted transporter 96.4 0.021 4.5E-07 61.9 10.6 127 91-253 263-390 (463)
261 KOG3626 Organic anion transpor 96.4 0.027 5.8E-07 63.3 11.6 184 65-255 389-649 (735)
262 COG3104 PTR2 Dipeptide/tripept 96.1 0.15 3.2E-06 54.7 14.8 160 89-273 304-480 (498)
263 KOG2563 Permease of the major 96.1 0.029 6.4E-07 59.1 9.4 183 71-286 268-456 (480)
264 PF06963 FPN1: Ferroportin1 (F 95.7 0.54 1.2E-05 50.5 17.2 139 86-250 275-413 (432)
265 PF02487 CLN3: CLN3 protein; 95.4 0.16 3.4E-06 53.7 11.8 63 185-253 333-395 (402)
266 TIGR00926 2A1704 Peptide:H+ sy 95.3 6.8 0.00015 44.6 28.1 253 94-409 9-271 (654)
267 KOG3098 Uncharacterized conser 95.0 1.3 2.7E-05 47.9 17.3 119 115-250 289-409 (461)
268 PF06813 Nodulin-like: Nodulin 95.0 0.39 8.5E-06 47.5 12.5 62 463-525 94-155 (250)
269 KOG3097 Predicted membrane pro 93.9 0.54 1.2E-05 47.7 10.7 120 61-217 21-140 (390)
270 KOG2325 Predicted transporter/ 93.9 0.6 1.3E-05 50.5 11.7 132 419-575 102-234 (488)
271 PF03092 BT1: BT1 family; Int 93.8 0.86 1.9E-05 49.2 13.2 89 465-572 86-177 (433)
272 KOG3810 Micronutrient transpor 92.2 4.7 0.0001 41.6 14.5 99 463-571 324-422 (433)
273 KOG4332 Predicted sugar transp 91.6 0.84 1.8E-05 45.1 8.2 140 107-275 284-426 (454)
274 PF01770 Folate_carrier: Reduc 89.5 32 0.0007 36.7 18.9 63 463-526 92-154 (412)
275 PF05978 UNC-93: Ion channel r 88.5 5 0.00011 36.7 10.2 63 463-525 87-149 (156)
276 KOG3880 Predicted small molecu 86.4 35 0.00075 34.9 15.2 60 464-523 341-400 (409)
277 TIGR00939 2a57 Equilibrative N 85.8 6.5 0.00014 42.5 11.0 156 69-248 269-427 (437)
278 TIGR00769 AAA ADP/ATP carrier 84.7 66 0.0014 35.1 20.3 70 197-271 276-345 (472)
279 KOG0637 Sucrose transporter an 84.1 1.9 4.1E-05 46.0 5.6 92 63-155 273-381 (498)
280 COG3202 ATP/ADP translocase [E 83.4 73 0.0016 34.7 28.4 168 67-254 25-209 (509)
281 PF13000 Acatn: Acetyl-coenzym 82.8 79 0.0017 34.6 23.6 57 466-522 406-462 (544)
282 PF03219 TLC: TLC ATP/ADP tran 75.3 1.3E+02 0.0029 32.9 29.9 168 67-254 22-205 (491)
283 PF13000 Acatn: Acetyl-coenzym 74.0 47 0.001 36.2 12.3 58 194-257 412-469 (544)
284 TIGR00939 2a57 Equilibrative N 73.8 1.4E+02 0.003 32.3 27.6 60 464-523 371-430 (437)
285 KOG1479 Nucleoside transporter 70.8 1.5E+02 0.0033 31.5 23.5 58 464-521 342-399 (406)
286 PF03219 TLC: TLC ATP/ADP tran 70.2 64 0.0014 35.4 12.7 43 484-526 163-205 (491)
287 COG5336 Uncharacterized protei 63.4 23 0.00049 29.8 5.6 26 123-148 60-85 (116)
288 COG0477 ProP Permeases of the 60.9 1.6E+02 0.0034 28.3 13.7 62 465-526 94-157 (338)
289 COG3619 Predicted membrane pro 56.9 2E+02 0.0043 28.0 17.2 68 67-135 10-84 (226)
290 KOG1237 H+/oligopeptide sympor 54.0 38 0.00082 38.0 7.4 69 182-256 453-521 (571)
291 PF01733 Nucleoside_tran: Nucl 51.3 5.6 0.00012 40.8 0.4 57 186-248 247-303 (309)
292 KOG2601 Iron transporter [Inor 49.9 3.4E+02 0.0074 28.8 21.0 56 465-520 386-441 (503)
293 PF09527 ATPase_gene1: Putativ 49.1 78 0.0017 23.0 6.1 34 114-147 9-42 (55)
294 PF06912 DUF1275: Protein of u 48.1 2.5E+02 0.0054 26.6 19.7 35 234-269 167-201 (209)
295 PF07672 MFS_Mycoplasma: Mycop 45.7 3.2E+02 0.007 27.3 13.5 226 218-526 1-267 (267)
296 TIGR01666 YCCS hypothetical me 43.5 3E+02 0.0064 31.8 12.5 32 125-156 43-77 (704)
297 COG1230 CzcD Co/Zn/Cd efflux s 42.5 3.8E+02 0.0083 27.2 12.8 83 64-154 21-105 (296)
298 PRK10263 DNA translocase FtsK; 41.8 2.9E+02 0.0063 34.1 12.3 12 120-131 63-74 (1355)
299 PF06123 CreD: Inner membrane 41.6 4.5E+02 0.0098 28.3 12.8 19 424-442 300-318 (430)
300 PF11947 DUF3464: Protein of u 41.5 78 0.0017 28.7 6.0 50 186-244 96-145 (153)
301 PRK11715 inner membrane protei 41.1 4.4E+02 0.0095 28.5 12.6 19 424-442 306-324 (436)
302 KOG1479 Nucleoside transporter 40.3 75 0.0016 33.8 6.6 111 107-245 284-395 (406)
303 KOG4112 Signal peptidase subun 39.6 67 0.0015 26.2 4.7 51 232-285 26-76 (101)
304 TIGR01667 YCCS_YHJK integral m 38.3 2.6E+02 0.0055 32.3 11.1 32 125-156 43-77 (701)
305 PRK03612 spermidine synthase; 38.1 6E+02 0.013 28.2 14.3 50 475-525 120-169 (521)
306 PF12273 RCR: Chitin synthesis 34.8 18 0.0004 31.8 1.0 17 259-275 1-17 (130)
307 PF07857 DUF1632: CEO family ( 30.4 1.1E+02 0.0025 30.2 5.8 27 496-522 74-100 (254)
308 COG5336 Uncharacterized protei 29.5 3.5E+02 0.0077 22.9 7.9 34 495-528 36-69 (116)
309 PF01102 Glycophorin_A: Glycop 28.6 68 0.0015 27.9 3.4 27 551-578 70-96 (122)
310 TIGR02230 ATPase_gene1 F0F1-AT 28.1 1.8E+02 0.004 24.3 5.7 18 123-140 60-77 (100)
311 TIGR02230 ATPase_gene1 F0F1-AT 28.0 3.5E+02 0.0075 22.7 7.3 38 232-269 46-87 (100)
312 KOG3574 Acetyl-CoA transporter 27.9 4.8E+02 0.01 27.9 9.8 59 196-260 378-436 (510)
313 PRK11469 hypothetical protein; 26.6 5.4E+02 0.012 24.2 10.8 78 67-153 104-182 (188)
314 PF12805 FUSC-like: FUSC-like 25.3 5.1E+02 0.011 25.9 9.8 17 187-203 23-39 (284)
315 KOG4830 Predicted sugar transp 25.2 1.4E+02 0.0031 29.8 5.3 60 77-138 25-93 (412)
316 PF06645 SPC12: Microsomal sig 24.9 3.2E+02 0.0069 21.5 6.3 48 233-283 12-59 (76)
317 PF12805 FUSC-like: FUSC-like 23.6 7.5E+02 0.016 24.7 10.7 18 552-569 77-95 (284)
318 PF02554 CstA: Carbon starvati 22.0 9.5E+02 0.021 25.3 11.4 31 227-261 54-85 (376)
319 PF12670 DUF3792: Protein of u 21.2 5.2E+02 0.011 22.0 8.9 45 234-278 43-87 (116)
No 1
>KOG1237 consensus H+/oligopeptide symporter [Amino acid transport and metabolism]
Probab=100.00 E-value=8.3e-57 Score=489.59 Aligned_cols=510 Identities=45% Similarity=0.744 Sum_probs=456.6
Q ss_pred CCccccCCCCccccc---cCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHhhhh
Q 007580 49 TTPVNVHGKPIADLS---KTGGWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLG 125 (597)
Q Consensus 49 ~~~~~~~~~p~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~ 125 (597)
.+.+|+++++. .+. +++.|+....++..+.+++++++++..++..|++.++|.+...+...++.|.+...+.++++
T Consensus 15 ~~~~d~~~~~~-~~~~~~~~g~~~s~~~il~~e~~e~~a~~g~~~nlv~ylt~~~~~~~~~aa~~v~~f~G~~~~~~l~g 93 (571)
T KOG1237|consen 15 FTSVDYRGPLL-GSSIAFKTGGWLSAPFILGNEVLERLAFFGLVSNLVTYLTLELHASGGGAANNVNAFGGTQFLLPLLG 93 (571)
T ss_pred cceeeccCCcc-cccccceechhHhHHHHHHHHHHHHHhHhcchhHHHHHHHHHhccchHHHHHHHHHHhhHHHHHHHHH
Confidence 35667776666 554 88999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhcccchHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhhchh
Q 007580 126 GFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIR 205 (597)
Q Consensus 126 G~lsD~~~GR~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~ 205 (597)
++++|.|+||++++.++.+++.+|..++++++..+.+.|. .| .......+|+.+++.+...++.++.+.++|.|+.+
T Consensus 94 ~~laD~f~gry~tI~~~s~i~~~G~~~lt~~a~~~~l~p~--~~-~~~~~~~~c~~~s~~q~~~~~~~l~lia~G~gg~r 170 (571)
T KOG1237|consen 94 AFLADSFLGRYFTINIGSLISLLGLFGLTLSAMIPALLPF--MC-KFKPGGNVCESPSKLQLAVLYGALYLIALGAGGIR 170 (571)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCc--cc-cCCCCCCcccCcchHHHHHHHHHHHHheeccCCCC
Confidence 9999999999999999999999999999999999888886 44 11112346999999999999999999999999999
Q ss_pred hhhhhhhhccCCCCCchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHhcCcccc
Q 007580 206 PCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGTPLYRH 285 (597)
Q Consensus 206 ~~~~~~~ad~~~~~~~~~~~~R~~~~~~~~~~~~lg~~l~p~i~~~i~~~~gw~~~f~i~~~~~~~~~~~~~~~~~~~~~ 285 (597)
|+..++.+|||++..+.++..+.++|+|+++..++|.+++-++..|++++.||.++|.++.+++++++++++.+.+.|++
T Consensus 171 ~~~~~fGadQfd~~~~~~~~~~~~fFnW~yf~~~~g~l~a~t~~vyiq~~~~w~lgf~i~~~~~~lai~iF~~g~~~y~~ 250 (571)
T KOG1237|consen 171 PCLLAFGADQFDELDPVEVKGIPSFFNWFYFSQNGGALLAQTVLVYIQDNVGWKLGFGIPTVLNALAILIFLPGFPFYRY 250 (571)
T ss_pred CcchhhcccccCccCcchhhCcccchhHHHHHHHHHHHHHHHHHHhhhhcccceeeccHHHHHHHHHHHHHHcCceeEEe
Confidence 99999999999988887888888999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCchhhHHHHHHHHHHhhhcccCccccccccccCCCcccccCCcccccCCcchhhHHHhhhhhcc---cCCCCCCc
Q 007580 286 RLPGGSPLTRVAQVLVAAFRKRHAAFSSSELIGLYEVPGKHSAIKGSGKIAHTDDFRCLDKAALELKED---VINPSPWK 362 (597)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~---~~~~~~~~ 362 (597)
.++.++|+.++.++++++.+||+...+.++.. + +.........++.+.++++|+|+++...+ ....+||+
T Consensus 251 ~~p~gsp~t~i~~Vlvaa~~k~~~~~~~~~~~-~------~~~~~~~~~~~~t~~f~~l~kaa~~~~~~~~~~~~~~~w~ 323 (571)
T KOG1237|consen 251 KKPRGSPKTRIGQVLVAAAFKRKAVVSLDPEE-L------YYDCTDSVAIEGTKPFRFLDKAALKTSDDLKDGLDANPWR 323 (571)
T ss_pred eCCCCCchhHHHHHHHHHHHHHhccCCCcchh-c------cccccccccccCCcccchhhHhhccCCcccccccccCCcc
Confidence 99999999999999999999999888765443 2 11122223445678899999999987653 23468999
Q ss_pred cccchhhhhhhHhHhhhhhHHHHHHHHHHHhcchhhHHHHHhhhcccC--------------------------------
Q 007580 363 LCTVTQVEEVKTLVRLVPIPACTIMLNVILTEFLTLSVQQAYTMNTHM-------------------------------- 410 (597)
Q Consensus 363 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------------------------- 410 (597)
+|+++++||.|++++.+|+|.+.++++++++|+.+.++.|+.+||+++
T Consensus 324 lct~~~Vee~K~~lr~~Pi~~~~i~~~~~~aq~~t~~v~Q~~~mdr~~~~~f~ip~asl~~f~~~~~~~~iplydr~~vP 403 (571)
T KOG1237|consen 324 LCTVTQVEEVKAVLRLLPIWLTTIIYSTVYAQMVTFFVLQATTMDRHLGSNFKIPAASLQVFILLSILIFIPLYDRVIVP 403 (571)
T ss_pred CCCceehhhhhhhhhhhHHHHHHHHHHHHHHhhhhheehhhhhcCCCCCCCeEeCchhHHHHHHHHHHhhhhhcceeehh
Confidence 999999999999999999999999999999999999999999999888
Q ss_pred ------CCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhcCccccccCcCccchHHHHHHHHHHHHHHHHHHHH
Q 007580 411 ------GHPRGASQLQRVGIGLAVSILSVIWAGIFERYRRNYAISHGYEFSFLTAMPDLSAYWLLIQYCLIGIAEVFCIV 484 (597)
Q Consensus 411 ------~~~~~~~~~~~i~~G~~l~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~s~~~l~~~~~l~g~g~~~~~~ 484 (597)
+...+++.++|+++|+++..++|..++.+|.+|++.+.+. .....+ +|++|++|||+++|++|.+..+
T Consensus 404 ~~~~~t~~~~~~t~lqrig~G~~~si~sm~~aa~vE~krl~~~~~~-----~~~~~~-mSi~W~iPQyvLig~~Evf~~v 477 (571)
T KOG1237|consen 404 FARKLTGNPFGITPLQRIGIGLVLSILSMAVAGIVEAKRLKTAVSL-----LVETNP-MSILWQIPQYVLLGAGEVFTSV 477 (571)
T ss_pred hhhhhcCCCCCCChhheeeccchHHHHHHHHHHHHHHHHhhhhhhc-----cCCCCC-eeHHHHHHHHHHHHHHHHHHhh
Confidence 3335789999999999999999999999999998887651 122456 9999999999999999999999
Q ss_pred HHHHHHHhhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCCCCCccc-cCCCCcchhHHHHHHHHHHHHHH
Q 007580 485 GLLEFLYEEAPDAMKSIGSAYAALAGGLGCFAASILNSIIKSVTGNPKKGQPNWLA-QNINTGRFDYLYWLLAVLSVINF 563 (597)
Q Consensus 485 ~~~~~~~~~~P~~~rg~~~gl~~~~~~lg~~lg~~l~~~v~~~~g~~~~~~~~w~~-~~l~~~~~~~~f~~~a~l~~l~~ 563 (597)
+++|+.++++|++||+.+++++.+..++|++++++++.++...++ . ..+|++ +|+|.+|++++||+++.++.++.
T Consensus 478 g~lEFfY~qaP~sMkS~~~al~l~t~a~G~~lss~Lv~~v~~~t~--~--~~~w~~~~~ln~~~ld~Fy~lla~~~~~n~ 553 (571)
T KOG1237|consen 478 GGLEFFYSQAPESMKSVATALWLLTVAVGNYLSSVLVSLVQFSTG--K--AAEWLGFANLNKGRLDYFYWLLAVYSAVNF 553 (571)
T ss_pred hhHHHhHhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC--C--CcccCChhHhhhhHHHHHHHHHHHHHhhhh
Confidence 999999999999999999999999999999999999999988764 2 468999 99999999999999999999999
Q ss_pred HHHHHhhhcccccccC
Q 007580 564 CAFLYSAYRYKYRSEQ 579 (597)
Q Consensus 564 ~~~~~~~~~~~~~~~~ 579 (597)
+.+.++.++|+++..+
T Consensus 554 ~~~~~~~~~y~~~~~~ 569 (571)
T KOG1237|consen 554 LYFLICAKRYDYKDDK 569 (571)
T ss_pred hheEEEEEeeeecccc
Confidence 9999999999888654
No 2
>COG3104 PTR2 Dipeptide/tripeptide permease [Amino acid transport and metabolism]
Probab=100.00 E-value=1.3e-37 Score=322.98 Aligned_cols=431 Identities=17% Similarity=0.251 Sum_probs=329.8
Q ss_pred cccCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC----CChHHHHHHHHHHHHHHHHHhhhhHHHhhcccchHH
Q 007580 62 LSKTGGWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMH----KSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYW 137 (597)
Q Consensus 62 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~----~s~~~a~~~~~~~~~~~~~~~~~~G~lsD~~~GR~~ 137 (597)
....+++|.++.++..+++||++|||+...+..|++.+++ ++.+++..+.+.|....++.+++|||++||++|+|+
T Consensus 14 ~~~f~~Pr~l~~if~vE~WERFsyYGmraiL~~Yl~~~~~~gLg~~~~~A~~l~~~y~slVY~t~i~GG~laDr~LG~~~ 93 (498)
T COG3104 14 MKFFGQPRGLYLIFFVELWERFSYYGMRAILILYLYYQLGDGLGFDETHATGLFSAYGSLVYLTPIIGGWLADRVLGTRR 93 (498)
T ss_pred cccCCCCchHHHHHHHHHHHHHhhhhhHHHHHHHHHHhccccCCcChHhhHHHHHHHHHHHHHHHHHHHHHHHHhcchhH
Confidence 4445688999999999999999999999999999999999 999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhhccccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhhchhhhhhhhhhccCC
Q 007580 138 TIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFD 217 (597)
Q Consensus 138 ~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~~~ 217 (597)
++..+.+++++|.++++.+.. .+...++++..++++|.|+.+++..++++|++|
T Consensus 94 tI~lGail~~iGh~~L~~~~~--------------------------~~~~gl~i~L~~I~iG~Gl~K~NiS~llg~ly~ 147 (498)
T COG3104 94 TIVLGAILMAIGHLVLAISSV--------------------------SGPGGLYIGLALIIVGTGLFKPNISSLLGELYP 147 (498)
T ss_pred HHHHHHHHHHHHHHHHhcccc--------------------------ccccHHHHHHHHHHhccccccccHHHHHHHhcC
Confidence 999999999999999998631 134579999999999999999999999999999
Q ss_pred CCCchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHhcCcccccC--CCCCchhh
Q 007580 218 ERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGTPLYRHRL--PGGSPLTR 295 (597)
Q Consensus 218 ~~~~~~~~~R~~~~~~~~~~~~lg~~l~p~i~~~i~~~~gw~~~f~i~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~ 295 (597)
+++++ |..+|+++|++.|+|+.++|++.+++.++.||.++|.+.++.+.++++.++++++...... +...++..
T Consensus 148 ~~Dpr----rD~gFt~fY~~iNiGsl~~p~i~~~~~~~~g~~~gF~~aavGm~~gl~~f~~~~r~~~~~~~~~~~~~~~~ 223 (498)
T COG3104 148 KDDPR----RDGGFTLFYMGINIGSLIAPIITGLLAINYGWHVGFGLAAVGMIIGLVIFLLGRRHVKGIGGVPDPNPLSF 223 (498)
T ss_pred CCCcc----cCCCccEEEEEeehHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHccchhcCCCCCCCccchhh
Confidence 99987 9999999999999999999999999999999999999999999999999999888775543 22222111
Q ss_pred ------HHHHHHHHHHhhhcccCccccccccccCCCcccccCCcccccCCcchhhH-HHhhhhhccc-CCCCCCccccch
Q 007580 296 ------VAQVLVAAFRKRHAAFSSSELIGLYEVPGKHSAIKGSGKIAHTDDFRCLD-KAALELKEDV-INPSPWKLCTVT 367 (597)
Q Consensus 296 ------~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~-~a~~~~~~~~-~~~~~~~~~~~~ 367 (597)
...++.....- + ... + ...+..+... ...+...... ...-.|. .+
T Consensus 224 ~~~~~~~~~~~~~~~~~-----~--~~~-~----------------l~~~~~~~~~~~~~i~~~~~~~~~~~~~~---~~ 276 (498)
T COG3104 224 NFLLPVLGGLVVMILAA-----L--LTL-L----------------LNQNTFSGVLLVISILIAIIYFAEAFRSP---KV 276 (498)
T ss_pred hhhhhhHHHHHHHHHHH-----H--HHH-H----------------HHHHHHHHHHHHHHHHHHHHHHHHHhccC---cc
Confidence 11111111000 0 000 0 0000011110 0000000000 0001111 12
Q ss_pred hhhhhhHhHhhhhhHHHHHHHHHHHhcchhhHHHHHh-hhcccC---------------------------------CCC
Q 007580 368 QVEEVKTLVRLVPIPACTIMLNVILTEFLTLSVQQAY-TMNTHM---------------------------------GHP 413 (597)
Q Consensus 368 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~---------------------------------~~~ 413 (597)
. +|+|+.+..+++++...+||+++.|+++.+..++. ..|++. +..
T Consensus 277 ~-~er~r~~~~~~Lfl~~~iFW~~~~Q~~ssl~~~a~~~v~~~~~g~~vp~~~fQslNp~~Iii~~pI~a~l~~~l~~~~ 355 (498)
T COG3104 277 F-DERRRLLAAIPLFLFAVIFWALYEQMGSSLNLYADRNVNRQIFGFEVPPAWFQSLNPFFIILFSPILAALWTKLGRGN 355 (498)
T ss_pred H-HHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHhhcccccceecCHHHHHhhCHHHHHHHHHHHHHHHhHhhcCC
Confidence 2 68899999999999999999999999999988875 446661 333
Q ss_pred CCCChhHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhcCccccccCcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 007580 414 RGASQLQRVGIGLAVSILSVIWAGIFERYRRNYAISHGYEFSFLTAMPDLSAYWLLIQYCLIGIAEVFCIVGLLEFLYEE 493 (597)
Q Consensus 414 ~~~~~~~~i~~G~~l~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~s~~~l~~~~~l~g~g~~~~~~~~~~~~~~~ 493 (597)
+.++...++++|+.+++++++++........+ +....|++|+++.|+++++||.+.+|..++++++.
T Consensus 356 ~~ps~~~KFalGl~l~g~~fl~l~~~~~~~~~-------------~~~~~s~~~lil~y~l~s~gEL~iSpvGLs~~t~l 422 (498)
T COG3104 356 KQPSTPIKFALGLILAGLGFLILLLAGIWFGG-------------PSGLVSVWWLVLSYVLQSFGELFISPVGLSMVTKL 422 (498)
T ss_pred CCCCcchHHHHHHHHHHHHHHHHHHHHHhhcC-------------CCCCcCHHHHHHHHHHHHHHHHHhCHHHHHHHHHh
Confidence 55788888999999999999888776433211 11227899999999999999999999999999999
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCCCCCccccCCCCcchhHHHHHHHHHHHHHHHHHHHhhhcc
Q 007580 494 APDAMKSIGSAYAALAGGLGCFAASILNSIIKSVTGNPKKGQPNWLAQNINTGRFDYLYWLLAVLSVINFCAFLYSAYRY 573 (597)
Q Consensus 494 ~P~~~rg~~~gl~~~~~~lg~~lg~~l~~~v~~~~g~~~~~~~~w~~~~l~~~~~~~~f~~~a~l~~l~~~~~~~~~~~~ 573 (597)
+|+.+.+..||++.+....|+.++..+.+.... ++ +..+..+...+|+..+...++..+......++.
T Consensus 423 aP~~~~s~~ma~wfLt~a~~~~l~g~va~~~~~-~~-----------~~~~~~~~~~~F~~~g~v~i~~~~~~~~~~~~~ 490 (498)
T COG3104 423 APPALKSFIMAMWFLTVAAGQTLGGQVAGLTAV-TD-----------PAYTAFIEGRVFGTIGVVAIVIGILLLLLSPKL 490 (498)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHhhceecccccc-cc-----------hhhhhhhhhhhHHHHHHHHHHHHHHHHHhhHHH
Confidence 999999999999999999999999988774221 11 001112234578888888888888777776664
Q ss_pred cc
Q 007580 574 KY 575 (597)
Q Consensus 574 ~~ 575 (597)
++
T Consensus 491 ~r 492 (498)
T COG3104 491 NR 492 (498)
T ss_pred HH
Confidence 44
No 3
>PRK10207 dipeptide/tripeptide permease B; Provisional
Probab=100.00 E-value=3.7e-34 Score=311.89 Aligned_cols=431 Identities=12% Similarity=0.149 Sum_probs=305.5
Q ss_pred cCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHhhhhHHHhhcccchHHHHHHHH
Q 007580 64 KTGGWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFT 143 (597)
Q Consensus 64 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~lsD~~~GR~~~~~~~~ 143 (597)
.+++||.++.+++.+++|++++|++..+++.|+++++|++.++++++.+.|....++.++++|+++||++||||+++++.
T Consensus 9 ~~~~p~~~~~~~~~~~~er~~~y~~~~~l~~yl~~~lg~~~~~a~~i~~~~~~~~~~~~~~~G~laDr~~G~r~~~~~g~ 88 (489)
T PRK10207 9 LLQQPRPFFMIFFVELWERFGYYGVQGILAVFFVKQLGFSQEQAFITFGAFAALVYGLISIGGYVGDHLLGTKRTIVLGA 88 (489)
T ss_pred hhcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhhHHHhhhhccchHHHHHHHH
Confidence 35789999999999999999999999999999999999999999999999999999999999999998779999999999
Q ss_pred HHHHHHHHHHHHhhhccccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhhchhhhhhhhhhccCCCCCchh
Q 007580 144 TIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDY 223 (597)
Q Consensus 144 ~l~~~g~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~ 223 (597)
+++.++.++++++.. ....++++|.++|+|.|...|+..++++|+||+++++
T Consensus 89 ~~~~~g~~~~~~~~~---------------------------~~~ll~~~~~l~~ig~g~~~~~~~~li~~~~p~~~~~- 140 (489)
T PRK10207 89 IVLAIGYFMTGMSLL---------------------------KPDLIFIALGTIAVGNGLFKANPASLLSKCYPPKDPR- 140 (489)
T ss_pred HHHHHHHHHHHHhcc---------------------------chhHHHHHHHHHHhccccccCCHHHHHHHhcCCCchh-
Confidence 999999999998621 1234668999999999999999999999999987632
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHhcCcccccC--CCCCchhhHHHHH-
Q 007580 224 KTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGTPLYRHRL--PGGSPLTRVAQVL- 300 (597)
Q Consensus 224 ~~~R~~~~~~~~~~~~lg~~l~p~i~~~i~~~~gw~~~f~i~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~- 300 (597)
|++.+++++++.|+|..+||.+++++.++.|||+.|++.++.+.++++.+...++.+++.+ +++++.+.....+
T Consensus 141 ---~~~~~~~~~~~~nig~~~g~~l~g~l~~~~gw~~~F~i~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~l~ 217 (489)
T PRK10207 141 ---LDGAFTLFYMSINIGSLISLSLAPVIADKFGYSVTYNLCGAGLIIALLVYFACRGMVKDIGSEPDHKPMSFSKLLLV 217 (489)
T ss_pred ---hhcchhHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHHHHHHcchhhcccCCCCCccchhhhhHHHH
Confidence 6889999999999999999999999999999999999987766666666655554443322 2222221111000
Q ss_pred ------HHHHHhhhcccCccccccccccCCCcccccCCcccccCCcchhhHHHhhhhhcccCCCCCCccccchhhhhhhH
Q 007580 301 ------VAAFRKRHAAFSSSELIGLYEVPGKHSAIKGSGKIAHTDDFRCLDKAALELKEDVINPSPWKLCTVTQVEEVKT 374 (597)
Q Consensus 301 ------~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ 374 (597)
....-.+..........++.. ........+.... ...+. .++++
T Consensus 218 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------------~~~i~~~~f~~~~----------~~~~~-~~r~r 267 (489)
T PRK10207 218 LLGSVVMIFVCAWLMHNVEVANLVLIV-------------------LSIVVTIIFFREA----------FKLDK-TGRNK 267 (489)
T ss_pred HHHHHHHHHHHHHHHhhhhHHHHHHHH-------------------HHHHHHHHHHHHH----------hcCCH-HHHHH
Confidence 000000000000000000000 0000000000000 00012 23445
Q ss_pred hHhhhhhHHHHHHHHHHHhcchhhHHHHHh-hhcccC---------------------------------CCCCCCChhH
Q 007580 375 LVRLVPIPACTIMLNVILTEFLTLSVQQAY-TMNTHM---------------------------------GHPRGASQLQ 420 (597)
Q Consensus 375 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~---------------------------------~~~~~~~~~~ 420 (597)
....+.+++...++|..+.|..+.+..+.. .+++.. +++..++...
T Consensus 268 ~~~~~~l~~~~~~f~~~~~q~~~~l~l~~~~~~~~~~~G~~i~~~~~~~~n~~~iii~~pl~~~l~~rl~~r~~~~~~~~ 347 (489)
T PRK10207 268 MFVAFVLMLEAVVFYILYAQMPTSLNFFAINNVHHEILGFSINPVSFQALNPFWVVVASPILAGIYTHLGSKGKDLSMPM 347 (489)
T ss_pred HHHHHHHHHHHHHHHHHHHHcccHHHHHHHHhccccccceEECHHHHHhHhHHHHHHHHHHHHHHHHHHhhCCCCCCcHH
Confidence 555666677788899999998776665543 333321 3334567888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHhhhcCccccccCcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhhHH
Q 007580 421 RVGIGLAVSILSVIWAGIFERYRRNYAISHGYEFSFLTAMPDLSAYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPDAMKS 500 (597)
Q Consensus 421 ~i~~G~~l~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~s~~~l~~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg 500 (597)
++.+|+++.+++++.++..+... ...+ .. .+++|+++.+++.++||++.+|..++++++.+|++++|
T Consensus 348 k~~~G~~l~~~~~~~~~~~~~~~---~~~~---------~~-~s~~~~i~~~~l~g~Ge~~~~~~g~~~~~~~aP~~~~g 414 (489)
T PRK10207 348 KFTLGMFLCSLGFLTAAAAGMWF---ADAQ---------GL-TSPWFIVLVYLFQSLGELFISALGLAMIAALVPQHLMG 414 (489)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhh---cCCC---------Cc-cCHHHHHHHHHHHHHHHHHHhHHHHHHHHHhChHHHHH
Confidence 89999999888887665432110 0000 12 57899999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCCCCCccccCCCCcchhHHHHHHHHHHHHHHHHHHHhhhccccc
Q 007580 501 IGSAYAALAGGLGCFAASILNSIIKSVTGNPKKGQPNWLAQNINTGRFDYLYWLLAVLSVINFCAFLYSAYRYKYR 576 (597)
Q Consensus 501 ~~~gl~~~~~~lg~~lg~~l~~~v~~~~g~~~~~~~~w~~~~l~~~~~~~~f~~~a~l~~l~~~~~~~~~~~~~~~ 576 (597)
.++|++++...+|+.+|..+....... ....++. .....|.++|..+++++++..++++++.++.++.
T Consensus 415 ~~~g~~~l~~~ig~~lg~~l~~~~~~~----~~~~~~~----~~~~~~~~~f~~~~~~~~~~~v~~~~~~~~~~~~ 482 (489)
T PRK10207 415 FILGMWFLTQAAAFLLGGYVATFTAVP----DNITDPL----ETLPVYTNVFGKIGLVTLGVAVVMALMVPWLNRM 482 (489)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccc----cccccch----hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999888754310 0000010 0112367789999999998888888877765554
No 4
>TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial. The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists.
Probab=100.00 E-value=8.2e-34 Score=308.87 Aligned_cols=421 Identities=14% Similarity=0.141 Sum_probs=306.6
Q ss_pred cCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--hCCChHHHHHHHHHHHHHHHHHhhhhHHHhhcccchHHHHHH
Q 007580 64 KTGGWIAALFIFGNEMAERMAYFGLSVNMVTFMFYV--MHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAI 141 (597)
Q Consensus 64 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~--~~~s~~~a~~~~~~~~~~~~~~~~~~G~lsD~~~GR~~~~~~ 141 (597)
..++++.++.+++.++++++++|++.++++.|++++ +|++..+++++.+.+.++..++++++|+++||++|||+++.+
T Consensus 5 ~~~~p~~~~~l~~~~~~~~~~~~~~~~~L~~yl~~~~~lg~s~~~ag~~~~~~~~~~~~~~~~~G~laDr~~G~~~~l~~ 84 (475)
T TIGR00924 5 FFGHPKPLFTLFFVELWERFSYYGMQGILAVYLVQQAGLGFSQEQAFIIFGAYSALVYLLTSVGWWFGDRVWGTKKTMVL 84 (475)
T ss_pred ccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHhhHHHHHHhhcchHHHHHH
Confidence 346778899999999999999999999999999988 999999999999999999999999999999996699999999
Q ss_pred HHHHHHHHHHHHHHhhhccccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhhchhhhhhhhhhccCCCCCc
Q 007580 142 FTTIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSK 221 (597)
Q Consensus 142 ~~~l~~~g~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~ 221 (597)
+.++..++.++++++ .+...++++|.+.|+|.|...++..++++|++|++++
T Consensus 85 ~~~~~~~g~~~~~~~----------------------------~~~~~~~~~~~l~g~g~g~~~~~~~~~~a~~~~~~~~ 136 (475)
T TIGR00924 85 GGIVLMLGHFMLAMS----------------------------IYPDLIFYGLGTIAVGSGLFKANPSSMVGKLYERGDM 136 (475)
T ss_pred HHHHHHHHHHHHHhc----------------------------ccHhHHHHHHHHHHhccccccCCHHHHHHHhcCCCCc
Confidence 999999999888875 3456788899999999999999999999999987652
Q ss_pred hhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHhcCcccccCCCCCchhhHHHH--
Q 007580 222 DYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGTPLYRHRLPGGSPLTRVAQV-- 299 (597)
Q Consensus 222 ~~~~~R~~~~~~~~~~~~lg~~l~p~i~~~i~~~~gw~~~f~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 299 (597)
+ .|++++++++++.|+|..+||++++++.++.||++.|++.++.++++.++++..++.+++.++++++.....+.
T Consensus 137 ~---~r~~~~~~~~~~~niG~~ig~~l~g~l~~~~g~~~~f~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 213 (475)
T TIGR00924 137 P---RRDGGFTLFYMSINIGSFISPLLAGVIAENYGYHVGFNLAAVGMVIGLLTFFAGRHMLRDIGSVPDPLSGQGKTYG 213 (475)
T ss_pred c---cccceehhHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHcccccccCCCCCCCcchhhhhhH
Confidence 1 18889999999999999999999999999999999999988777766666666665554333322222111000
Q ss_pred ---------HHHHHHhhhcccCccccccccccCCCcccccCCcccccCCcchhhHHHhhhhhcccCCCCCCccccchhhh
Q 007580 300 ---------LVAAFRKRHAAFSSSELIGLYEVPGKHSAIKGSGKIAHTDDFRCLDKAALELKEDVINPSPWKLCTVTQVE 370 (597)
Q Consensus 300 ---------~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~ 370 (597)
+....+.... .... ...+........+........ ..+| ..++ .
T Consensus 214 ~~~~~~~~~~~~~~~~~~~----------~~~~-----------~~~~~~~~~~~~~~~~~~~~~-~~~~----~~~~-~ 266 (475)
T TIGR00924 214 KLLLALLAALALVFFCAWL----------MHHV-----------VIANILLMTVTLAVIIFFFRL-AFKP----RLDA-V 266 (475)
T ss_pred HHHHHHHHHHHHHHHHHHH----------Hhcc-----------HHHHHHHHHHHHHHHHHHHHH-HHhc----cCCH-H
Confidence 0000000000 0000 000000000000111110000 0011 0122 2
Q ss_pred hhhHhHhhhhhHHHHHHHHHHHhcchhhHHHH-HhhhcccC---------------------------------CCCCCC
Q 007580 371 EVKTLVRLVPIPACTIMLNVILTEFLTLSVQQ-AYTMNTHM---------------------------------GHPRGA 416 (597)
Q Consensus 371 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~---------------------------------~~~~~~ 416 (597)
++++....++++++..++|..+.|+.+.+..+ ...+|... ++..++
T Consensus 267 ~~~~~~~~l~l~~~~~~~~~~~~Q~~s~l~l~~~~~~~~~~~~~~ip~~~~~~~n~~~iil~~p~~~~~~~~l~~~~~~~ 346 (475)
T TIGR00924 267 ARNKMYAYIVLFLEAVVFWVLYAQMPTSLNFFADNNMHHEMLGMSVPVIWFQSLNPFWVVVGSPVLAMIWTRLGRKGKDP 346 (475)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccccceEECHHHHHhhhHHHHHHHHHHHHHHHHHHHhCCCCC
Confidence 33444557888889999999999998866543 34455442 222345
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhcCccccccCcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcch
Q 007580 417 SQLQRVGIGLAVSILSVIWAGIFERYRRNYAISHGYEFSFLTAMPDLSAYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPD 496 (597)
Q Consensus 417 ~~~~~i~~G~~l~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~s~~~l~~~~~l~g~g~~~~~~~~~~~~~~~~P~ 496 (597)
+...++.+|+++.++++..+++.... ... ..+ .+++|+++++++.++||.+..|..++++++.+|+
T Consensus 347 ~~~~k~~~G~~l~~~~~~~~~~~~~~----~~~---------~~~-~s~~~~i~~~~~~~~ge~~~~p~~~~~~~~~aP~ 412 (475)
T TIGR00924 347 TTPLKFTLGMLFCGASFLTFAASIWF----ADA---------GGL-TSPWFMVLIYLFQTLGELMISPLGLSWWTKIAPQ 412 (475)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHhh----cCC---------CCc-cCHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCCH
Confidence 67778899999999999888765211 100 123 7899999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCCCCCccccCCCCcchhHHHHHHHHHHHHHHHHHHHhhhccc
Q 007580 497 AMKSIGSAYAALAGGLGCFAASILNSIIKSVTGNPKKGQPNWLAQNINTGRFDYLYWLLAVLSVINFCAFLYSAYRYK 574 (597)
Q Consensus 497 ~~rg~~~gl~~~~~~lg~~lg~~l~~~v~~~~g~~~~~~~~w~~~~l~~~~~~~~f~~~a~l~~l~~~~~~~~~~~~~ 574 (597)
++||+++|++.+...+|+.+++.+.+...... +| .++|..++++.++..++++++.++.+
T Consensus 413 ~~~g~~~g~~~l~~~~g~~l~~~~~~~~~~~~--------~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~ 472 (475)
T TIGR00924 413 RLMGQMLGMWFLAQAMGSLLGGYLATFGAVPQ--------GV----------TGVFGKIGLVTLLVGVVMALMVPWLN 472 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc--------ch----------hhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999887653321 13 56788888888888777777766543
No 5
>PRK09584 tppB putative tripeptide transporter permease; Reviewed
Probab=100.00 E-value=4.7e-32 Score=296.80 Aligned_cols=428 Identities=15% Similarity=0.200 Sum_probs=303.4
Q ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHhhhhHHHhhcccchHHHHHHHHHH
Q 007580 66 GGWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTI 145 (597)
Q Consensus 66 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~lsD~~~GR~~~~~~~~~l 145 (597)
++++.++.+++.++++++++|++..+++.|+++++|++..++++..+.+.......++++|+++||++|||+++.++.++
T Consensus 18 ~~p~~~~~~~~~~~~~~~~~y~~~~~l~~yl~~~lg~s~~~a~~~~~~~~~~~~~~~~~~G~LaDr~~G~r~~~~~g~~~ 97 (500)
T PRK09584 18 KQPKAFYLIFSIELWERFGYYGLQGIMAVYLVKQLGMSEADSITLFSSFSALVYGLVAIGGWLGDKVLGTKRVIMLGAIV 97 (500)
T ss_pred cCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHH
Confidence 56678899999999999999999999999999999999999999988888887888889999999944999999999999
Q ss_pred HHHHHHHHHHhhhccccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhhchhhhhhhhhhccCCCCCchhhh
Q 007580 146 YLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKT 225 (597)
Q Consensus 146 ~~~g~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~ 225 (597)
+.++..+++++. .+...++++|+++|+|.|...++..++++|++|+++.+
T Consensus 98 ~~ig~~l~~~~~---------------------------~~~~~l~~~~~l~gig~g~~~~~~~~l~~~~f~~~~~~--- 147 (500)
T PRK09584 98 LAIGYALVAWSG---------------------------HDAGIVYMGMATIAVGNGLFKANPSSLLSTCYEKDDPR--- 147 (500)
T ss_pred HHHHHHHHHHhc---------------------------ccHHHHHHHHHHHHHhhhcccCCHHHHHHHhcCCCchh---
Confidence 999988888752 13456778899999999999999999999999876532
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHhcCccccc--CCCCCchhhH--H----
Q 007580 226 HLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGTPLYRHR--LPGGSPLTRV--A---- 297 (597)
Q Consensus 226 ~R~~~~~~~~~~~~lg~~l~p~i~~~i~~~~gw~~~f~i~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~--~---- 297 (597)
|...+++++++.++|+.+||.+++++.++.|||+.|++.++..+++++.+++.++.+++. +++.++.+.. .
T Consensus 148 -~~~~~~~~~~~~~iG~~~gp~i~g~l~~~~g~~~~F~i~~i~~~i~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 226 (500)
T PRK09584 148 -LDGAFTMYYMSINIGSFFSMLATPWLAAKYGWSVAFALSVVGMLITVVNFAFCQRWVKQYGSKPDFEPINYRKLLLTIV 226 (500)
T ss_pred -hhhcchHHHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHhHHHhccCCCCCCccccchhhHHHHHH
Confidence 567889999999999999999999999999999999998876666665555544433332 2222222111 0
Q ss_pred HHH-HHHHHhhhcccCccccccccccCCCcccccCCcccccCCcchhhHHHhhhhhcccCCCCCCccccchhhhhhhHhH
Q 007580 298 QVL-VAAFRKRHAAFSSSELIGLYEVPGKHSAIKGSGKIAHTDDFRCLDKAALELKEDVINPSPWKLCTVTQVEEVKTLV 376 (597)
Q Consensus 298 ~~~-~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 376 (597)
.+. ...........++.. .....+........... ..+..++ .|+++.+
T Consensus 227 ~~~~~~~~~~~~~~~~~~~----------------------~~~~~~~~~~~~~~~~~-------~~~~~~~-~~~~~~~ 276 (500)
T PRK09584 227 GVVALIAIATWLLHNQEIA----------------------RMALGVVALGIVVIFGK-------EAFAMKG-AARRKMI 276 (500)
T ss_pred HHHHHHHHHHHHHhcchHH----------------------HHHHHHHHHHHHHHHHH-------HHhhcCH-HHHHHHH
Confidence 000 111110000000000 00000000000000000 0011122 3455555
Q ss_pred hhhhhHHHHHHHHHHHhcchhhHHHHHhh-hcccC------------------------------CCCCCCChhHHHHHH
Q 007580 377 RLVPIPACTIMLNVILTEFLTLSVQQAYT-MNTHM------------------------------GHPRGASQLQRVGIG 425 (597)
Q Consensus 377 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~------------------------------~~~~~~~~~~~i~~G 425 (597)
..+++++..+++|..+.|+++.+..++.. +|+.. +.+++.+..+++.+|
T Consensus 277 ~~~~~~~~~i~f~~~~~q~~~~l~~~~~~~~~~~~~g~~i~~~~~~s~n~i~iil~~p~~~~~~~~l~~r~~~~~~~~~G 356 (500)
T PRK09584 277 VAFILMLEAIIFFVLYSQMPTSLNFFAIRNVEHSILGIAVEPEQYQALNPFWIMIGSPILAAIYNKMGDRLPMPHKFAIG 356 (500)
T ss_pred HHHHHHHHHHHHHHHHHHhccHHHHHHHHhccccccceEECHHHHHHHhHHHHHHHHHHHHHHHHHhCcCCCcHHHHHHH
Confidence 66777788899999999999988876532 33222 445566788999999
Q ss_pred HHHHHHHHHHHHHHHHHHhHHhhhcCccccccCcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhhHHHHHHH
Q 007580 426 LAVSILSVIWAGIFERYRRNYAISHGYEFSFLTAMPDLSAYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPDAMKSIGSAY 505 (597)
Q Consensus 426 ~~l~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~s~~~l~~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~gl 505 (597)
+++++++++.+...... ..++ .. .+.+|+++++++.++||++..|...+++++.+|+++||+++|+
T Consensus 357 ~~l~~l~f~~l~~~~~~----~~~~---------~~-vs~~~~~~~~~l~~~ge~~~~p~g~s~~~~~aP~~~rg~~~g~ 422 (500)
T PRK09584 357 MVLCSGAFLVLPLGAKF----ANDA---------GI-VSVNWLIASYGLQSIGELMISGLGLAMVAQLVPQRLMGFIMGS 422 (500)
T ss_pred HHHHHHHHHHHHHHHHh----cCCC---------Cc-cCHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCcHHHHHHHHHH
Confidence 99999999887765321 1111 12 6788999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhhccCCCCCCCCCccccCCCCcchhHHHHHHHHHHHHHHHHHHHhhhccccc
Q 007580 506 AALAGGLGCFAASILNSIIKSVTGNPKKGQPNWLAQNINTGRFDYLYWLLAVLSVINFCAFLYSAYRYKYR 576 (597)
Q Consensus 506 ~~~~~~lg~~lg~~l~~~v~~~~g~~~~~~~~w~~~~l~~~~~~~~f~~~a~l~~l~~~~~~~~~~~~~~~ 576 (597)
+.+...+|+.++..+...+..- ....+.. ...+.|..+|..+++++++..+++++..++.++.
T Consensus 423 ~~l~~a~g~~~~g~~~~~~~~~----~~~~~~~----~~~~~~~~~f~~~~~~~~~~a~~~~~~~~~~~k~ 485 (500)
T PRK09584 423 WFLTTAGAALIAGYVANLMAVP----DNVTDPL----MSLEVYGRVFLQIGIATAVIAVLMLLTAPKLNRM 485 (500)
T ss_pred HHHHHHHHHHHHHHHHHHhccc----cccccch----hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999998887643210 0000000 0112367889888988887777777777765554
No 6
>PRK15462 dipeptide/tripeptide permease D; Provisional
Probab=100.00 E-value=8.8e-32 Score=289.45 Aligned_cols=425 Identities=14% Similarity=0.150 Sum_probs=296.8
Q ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHhhhhHHHhhcccchHHHHHHHHHH
Q 007580 66 GGWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTI 145 (597)
Q Consensus 66 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~lsD~~~GR~~~~~~~~~l 145 (597)
++++.++.+++.++++++++|++..+++.|+++.+|++..+++.+.+.+.....++++++|+++||++||||++.++.++
T Consensus 6 ~~p~~l~~l~~~~~~e~fs~Yg~~~~L~~yL~~~lgls~~~a~~i~~~~~~~~~l~~ligG~LaDRilGrrr~iliG~il 85 (493)
T PRK15462 6 SQPRAIYYVVALQIWEYFSFYGMRALLILYLTNQLKYDDNHAYELFSAYCSLVYVTPILGGFLADKVLGNRMAVMLGALL 85 (493)
T ss_pred cCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCcHHHHHHHHHH
Confidence 37889999999999999999999999999999999999999999999999999999999999999933999999999999
Q ss_pred HHHHHHHHHHhhhccccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhhchhhhhhhhhhccCCCCCchhhh
Q 007580 146 YLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKT 225 (597)
Q Consensus 146 ~~~g~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~ 225 (597)
..++..+++... .+...++++..+.++|.|...++..++++|+||+++++
T Consensus 86 ~~lg~lll~~~~---------------------------~~~~~~~l~l~li~iG~G~~~~~~~alv~elfp~~~~~--- 135 (493)
T PRK15462 86 MAIGHVVLGASE---------------------------IHPSFLYLSLAIIVCGYGLFKSNVSCLLGELYEPTDPR--- 135 (493)
T ss_pred HHHHHHHHHHhh---------------------------cchhHHHHHHHHHHHhcccccccHHHHHHHHCCCCCcc---
Confidence 999987766431 11223555666777888888899999999999987433
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHhcCcccccCC-CCCchhh--HHHHHHH
Q 007580 226 HLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGTPLYRHRLP-GGSPLTR--VAQVLVA 302 (597)
Q Consensus 226 ~R~~~~~~~~~~~~lg~~l~p~i~~~i~~~~gw~~~f~i~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~--~~~~~~~ 302 (597)
|+++++++|...|+|+.++|.+++++.++.||+++|++.++.++++++.++..++.+.+... ..++.++ .......
T Consensus 136 -R~sgf~i~Y~~~nlG~~iap~l~g~L~~~~Gw~~~F~iaaigm~l~li~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 214 (493)
T PRK15462 136 -RDGGFSLMYAAGNVGSIIAPIACGYAQEEYSWAMGFGLAAVGMIAGLVIFLCGNRHFTHTRGVNKKVLRATNFLLPNWG 214 (493)
T ss_pred -ccceehHHHHHHHHHHHHHHHHHHHHHhhhChHHHHHHHHHHHHHHHHHHHHhhhhhccCCCCCCCCchhhhHHHHHHH
Confidence 99999999999999999999999999999999999999887777777777666655433211 1122211 0000000
Q ss_pred HHHhhhcccCccccccccccCCCcccccCCcccccCCcchhhHH-HhhhhhcccCCCCCCccccchhhhhhhHhHhhhhh
Q 007580 303 AFRKRHAAFSSSELIGLYEVPGKHSAIKGSGKIAHTDDFRCLDK-AALELKEDVINPSPWKLCTVTQVEEVKTLVRLVPI 381 (597)
Q Consensus 303 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~-a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 381 (597)
..----...+ . +... ... ......+-. ..+....-.. +-.......+|+|++...+++
T Consensus 215 ~~~~~~~~~~----~-~~~~-----------~~~-~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~er~r~~~~~~l 273 (493)
T PRK15462 215 WLLVLLVATP----A-LITV-----------LFW-KEWSVYALIVATIIGLGVLA----KIYRKAENQKQRKELGLIVTL 273 (493)
T ss_pred HHHHHHHHHH----H-HHHH-----------HHH-HHHHHHHHHHHHHHHHHHHH----HHHHhcCCHHHHhhHHHHHHH
Confidence 0000000000 0 0000 000 000000000 0000000000 000000123678888888999
Q ss_pred HHHHHHHHHHHhcchhhHHHHH-hhhcccC---------------------------------CCCCCCChhHHHHHHHH
Q 007580 382 PACTIMLNVILTEFLTLSVQQA-YTMNTHM---------------------------------GHPRGASQLQRVGIGLA 427 (597)
Q Consensus 382 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~---------------------------------~~~~~~~~~~~i~~G~~ 427 (597)
++..++||..|.|.++.+...+ +++|+++ ++++.++...++.+|++
T Consensus 274 ~~~~~~Fw~~~~Q~~~sl~lfa~~~vd~~~~g~~ip~~~~qslNp~~ii~l~P~~a~lw~~l~~~~~~~s~~~Kfa~g~~ 353 (493)
T PRK15462 274 TFFSMLFWAFAQQGGSSISLYIDRFVNRDMFGYTVPTAMFQSINAFAVMLCGVFLAWVVKESVAGNRTVRIWGKFALGLG 353 (493)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHhccchhcceeeCHHHHHhHhHHHHHHHHHHHHHHHHHHhcCCCCCCcHHHHHHHHH
Confidence 9999999999999999877665 4667665 23445788889999999
Q ss_pred HHHHHHHHHHHHHHHHhHHhhhcCccccccCcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHH
Q 007580 428 VSILSVIWAGIFERYRRNYAISHGYEFSFLTAMPDLSAYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPDAMKSIGSAYAA 507 (597)
Q Consensus 428 l~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~s~~~l~~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~gl~~ 507 (597)
++++++.++.+..... ..+| . .+.+|++..++++++||.+.+|..++++.+.+|++.||+.||++.
T Consensus 354 ~~g~~f~~l~~~~~~~----~~~~---------~-~s~~wl~~~~~~~t~gEl~~sPvgls~~~~laP~~~~g~~mg~w~ 419 (493)
T PRK15462 354 LMSAGFCILTLSARWS----AMYG---------H-SSLPLMVLGLAVMGFAELFIDPVAMSQITRIEIPGVTGVLTGIYM 419 (493)
T ss_pred HHHHHHHHHHHHHhhc----CCCC---------C-cCHHHHHHHHHHHHHHHHHHChHHHHHHHHhChHHHHHHHHHHHH
Confidence 9999998887653221 1111 2 688999999999999999999999999999999999999999998
Q ss_pred HHH-HHHHHHHHHHHHHhhhccCCCCCCCCCccccCCCCcchhHHHHHHHHHHHHH
Q 007580 508 LAG-GLGCFAASILNSIIKSVTGNPKKGQPNWLAQNINTGRFDYLYWLLAVLSVIN 562 (597)
Q Consensus 508 ~~~-~lg~~lg~~l~~~v~~~~g~~~~~~~~w~~~~l~~~~~~~~f~~~a~l~~l~ 562 (597)
+.. .+|+.++..+.+.......+|+.+. .-+..+|..+|..++.+.++.
T Consensus 420 l~~~~~~~~~~g~~~~~~~~~~~~~~~~~------~~~~~~~~~~f~~~~~~~~~~ 469 (493)
T PRK15462 420 LLSGAIANYLAGVIADQTSQASFDASGAI------NYSINAYIEVFDQITWGALAC 469 (493)
T ss_pred HHHHHHHHHHHHHHHHHhccccCCccccc------cchhhhHHHHHHHHHHHHHHH
Confidence 854 7999998888776532111000000 001224677888888777666
No 7
>TIGR00926 2A1704 Peptide:H+ symporter (also transports b-lactam antibiotics, the antitumor agent, bestatin, and various protease inhibitors).
Probab=99.97 E-value=2.3e-28 Score=271.49 Aligned_cols=411 Identities=24% Similarity=0.397 Sum_probs=325.9
Q ss_pred HHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHhhhhHHHhhcccchHHHHHHHHHHHHHHHHHHHHhhhcccc
Q 007580 83 MAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVF 162 (597)
Q Consensus 83 ~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~lsD~~~GR~~~~~~~~~l~~~g~~~~~~~~~~~~~ 162 (597)
++|||+...+..|+++.+|++.+.+..+.+.|.....+.++++|+++|+++||++++.++.+++.+|.+++++++.....
T Consensus 1 FsyYGm~aiLvlYl~~~lg~~~~~A~~i~~~f~~l~yl~pilGg~iAD~~lG~~~tIl~~~ii~~lG~~llai~a~~~~~ 80 (654)
T TIGR00926 1 FSYYGMRTILVLYFLNFLGFSESTSTVLFHTFTYLCYLTPLIGAIIADGWLGKFKTILYLSIVYVVGHALLSFGAIPSSG 80 (654)
T ss_pred CceeecHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhccCcccc
Confidence 36899999999999999999999999999999999999999999999999999999999999999999999876431111
Q ss_pred CCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhhchhhhhhhhhhccCCCCCchhhhhhhhHHHHHHHHHHHHH
Q 007580 163 MPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGA 242 (597)
Q Consensus 163 ~~~~~~c~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~R~~~~~~~~~~~~lg~ 242 (597)
++ .+...+++++.+.++|.|+++|+..++.+|++++++. +.|.++|+++|++.|+|+
T Consensus 81 ~~--------------------~~~~~~l~gLaLia~G~GgiKp~vsaf~gdqf~~~~~---~~~~s~F~~fY~~iNiGS 137 (654)
T TIGR00926 81 HP--------------------LHDLLDLLGLALIALGTGGIKPCVSAFGGDQFEERQL---SLRSRFFSFFYFAINAGS 137 (654)
T ss_pred cc--------------------hHHHHHHHHHHHHHhhccccccCchhhhHhhcCccch---hHHHHHHHHHHHHHHHHH
Confidence 11 2345577889999999999999999999999986542 238999999999999999
Q ss_pred HHHHHHHHHhhhc-------cchHHHHHHHHHHHHHHHHHHHHhcCcccccCCCCCchhhHHHHHHHHHHhhhcccCccc
Q 007580 243 IVAFTLVVYIQME-------HGWGSAFGALAIAMGISNMLFFIGTPLYRHRLPGGSPLTRVAQVLVAAFRKRHAAFSSSE 315 (597)
Q Consensus 243 ~l~p~i~~~i~~~-------~gw~~~f~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 315 (597)
.+++++.+++.+. .+|.++|.+++++++++++++..+++.+++.++.++++.+..+++..+.|+|.....+.
T Consensus 138 lis~~i~~~l~~~~~~fg~~~~~~~aF~i~~i~m~ia~lvf~~g~k~y~~~~p~gs~l~~v~~vi~~a~~~~~~~~~~~- 216 (654)
T TIGR00926 138 LISTIITPILRGDVGCFGCQDCYPLAFGVPAILMILALIVFMAGSKMYKKKPPKGNIVSKVIKCIVTALRKRFSTRSEH- 216 (654)
T ss_pred HHHHHHHHHHHHhhcccccCcchHHHHHHHHHHHHHHHHHHHHhccccCCCCCCccHHHHHHHHHHHHHHHhhccCCcc-
Confidence 9999999999854 36999999999999999999999998888888888877777787777776543321100
Q ss_pred cccccccCCCcccccCCcccccCCcchhhHHHhhhhhcccCCCCCCccccchhhhhhhHhHhhhhhHHHHHHHHHHHhcc
Q 007580 316 LIGLYEVPGKHSAIKGSGKIAHTDDFRCLDKAALELKEDVINPSPWKLCTVTQVEEVKTLVRLVPIPACTIMLNVILTEF 395 (597)
Q Consensus 316 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 395 (597)
...+|+|.+... ...++++++|++++++++++...++|..+.|+
T Consensus 217 -----------------------~~~~~ld~a~~~-------------~~~~~V~evkrll~il~l~i~~~ifw~~~~Q~ 260 (654)
T TIGR00926 217 -----------------------WPLHWLDYAKDK-------------HDIRMIRSTKRLLRVLVLFIPLPMFWALFDQQ 260 (654)
T ss_pred -----------------------cchhHHHHhccc-------------cccchHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 012455544332 12346788999999999999999999999999
Q ss_pred hhhHHHHHhhhcccC----------------------------------CCCCCCChhHHHHHHHHHHHHHHHHHHHHHH
Q 007580 396 LTLSVQQAYTMNTHM----------------------------------GHPRGASQLQRVGIGLAVSILSVIWAGIFER 441 (597)
Q Consensus 396 ~~~~~~~~~~~~~~~----------------------------------~~~~~~~~~~~i~~G~~l~~~~~~~~~~~~~ 441 (597)
.+....|+..++.++ +++..++..+++++|+++++++++++.+++.
T Consensus 261 ~s~~~~qa~~m~~~l~g~~ip~~~lq~~n~L~IIil~Pi~~~~lyp~l~~~~~~ls~l~k~~iG~~la~la~~va~~ve~ 340 (654)
T TIGR00926 261 GSRWTLQATRMDGDVGGFEIQPDQMQVVNPLLILIFVPIFDYIVYPAIAKCGTRFTSLRKMAVGGLLAALSFFVAALVQL 340 (654)
T ss_pred hhHHHHHHHHhcCccCCEecCHHHHHHHHHHHHHHhHHHHHHhHHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999988877653 3334578899999999999999998888877
Q ss_pred HHhHH------------------------------------------h-------------hh--c--------------
Q 007580 442 YRRNY------------------------------------------A-------------IS--H-------------- 450 (597)
Q Consensus 442 ~~~~~------------------------------------------~-------------~~--~-------------- 450 (597)
++++. . .. +
T Consensus 341 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 420 (654)
T TIGR00926 341 KVNPTLPEEPSANEIFLQVLNTDCTICDFSVLSKRVLPHDVYLHLDKKNTSGDQGLFTTKSSAKGWTLTYDLSYDGACGL 420 (654)
T ss_pred HHhccccCCCCCcceEEEEecCCCCcceEEEEecCCcccccccccCccccccccccccccccccccceEEEEeccccccc
Confidence 75430 0 00 0
Q ss_pred ---------------C----c------c------------------------c----c----------------------
Q 007580 451 ---------------G----Y------E------------------------F----S---------------------- 455 (597)
Q Consensus 451 ---------------g----~------~------------------------~----~---------------------- 455 (597)
+ + . + .
T Consensus 421 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 500 (654)
T TIGR00926 421 TGNCPKTTDAHELEPKISYVLLLSQGGYQLTANTDKPTDAKTEKGMGSVRLVNTLNGEFGMISLCTSDSDSVTPCNPRDP 500 (654)
T ss_pred cCCCCccccceeecCCceEEEEEecCCcceeeeeecCccCCCCCCCceEEEEecCCCcceeeEEecccCcccccCCcccc
Confidence 0 0 0 0 0
Q ss_pred ------------------------------c--------------------------cCcCccchHHHHHHHHHHHHHHH
Q 007580 456 ------------------------------F--------------------------LTAMPDLSAYWLLIQYCLIGIAE 479 (597)
Q Consensus 456 ------------------------------~--------------------------~~~~~~~s~~~l~~~~~l~g~g~ 479 (597)
. ..+.+ ++++|++++|+++++||
T Consensus 501 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~wq~pq~~~~~~~e 579 (654)
T TIGR00926 501 YDFYFRGTKYPANTCDRIDNAKSSTFLSNQLDMGIYYLIVITENSKIDELQAQIVELVSVNT-VSILWQIPQYVILTAGE 579 (654)
T ss_pred cccccccceeeeeecccccccccccccccccccceEEEEEEcCCCCCCcceeEEEEecCCCc-eeHHHHHHHHHHHHHHH
Confidence 0 01223 67899999999999999
Q ss_pred HHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCCCCCccccCCCCcchhHHHHHHHHHH
Q 007580 480 VFCIVGLLEFLYEEAPDAMKSIGSAYAALAGGLGCFAASILNSIIKSVTGNPKKGQPNWLAQNINTGRFDYLYWLLAVLS 559 (597)
Q Consensus 480 ~~~~~~~~~~~~~~~P~~~rg~~~gl~~~~~~lg~~lg~~l~~~v~~~~g~~~~~~~~w~~~~l~~~~~~~~f~~~a~l~ 559 (597)
.+......++.++++|+++|+...+++.+..++|+.+...+...- .-...| .-|..++++.
T Consensus 580 ~~~~~~~~e~~~~~~p~~mks~~~a~~~~~~~~g~~~~~~~~~~~--------~~~~~~-----------~~~~~~~~~~ 640 (654)
T TIGR00926 580 VLFSVTGLEFSYSQAPPNMKSVLQALWLLTVAIGNLIVVVIAEFE--------NFSVQA-----------AEFFLFASLM 640 (654)
T ss_pred HHHHHHHHHhhHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--------cChHHH-----------HHHHHHHHHH
Confidence 999999999999999999999999999999999999999887651 111223 3477777777
Q ss_pred HHHHHHHHHhhhcc
Q 007580 560 VINFCAFLYSAYRY 573 (597)
Q Consensus 560 ~l~~~~~~~~~~~~ 573 (597)
++..+++.++++.|
T Consensus 641 ~~~~~~f~~~a~~Y 654 (654)
T TIGR00926 641 LVVMAIFSILAYFY 654 (654)
T ss_pred HHHHHHHHHHHhcC
Confidence 77777777776543
No 8
>PRK03545 putative arabinose transporter; Provisional
Probab=99.94 E-value=6.9e-24 Score=225.64 Aligned_cols=179 Identities=12% Similarity=0.114 Sum_probs=151.2
Q ss_pred cCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHhhhhHHHhhcccchHHHHHHHH
Q 007580 64 KTGGWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFT 143 (597)
Q Consensus 64 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~lsD~~~GR~~~~~~~~ 143 (597)
+.++|..++.+.+..++.....+...+ +.+.+.+++|.+..+.++..+.+.++..++.++.|+++|| +|||+++.++.
T Consensus 4 ~~~~~~~~~~l~~~~~~~~~~~~~~~~-~~~~l~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr-~g~r~~~~~~~ 81 (390)
T PRK03545 4 RKVAWLRVVTLALAAFIFNTTEFVPVG-LLSDIAQSFHMQTAQVGLMLTIYAWVVALMSLPLMLLTSN-VERRKLLIGLF 81 (390)
T ss_pred cccchHHHHHHHHHHHHHHhHHHHHHc-chHHHHhHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHcC-CChHHHHHHHH
Confidence 344566666666666665444443333 3456788999999999999999999999999999999999 89999999999
Q ss_pred HHHHHHHHHHHHhhhccccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhhchhhhhhhhhhccCCCCCchh
Q 007580 144 TIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDY 223 (597)
Q Consensus 144 ~l~~~g~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~ 223 (597)
+++.++.+++.++ +++..++++|+++|++.+...+...+++.|++|+++
T Consensus 82 ~~~~~~~~~~~~~----------------------------~~~~~l~~~r~~~G~~~~~~~~~~~~~i~~~~~~~~--- 130 (390)
T PRK03545 82 VLFIASHVLSALA----------------------------WNFTVLLISRIGIAFAHAIFWSITASLAIRVAPAGK--- 130 (390)
T ss_pred HHHHHHHHHHHHh----------------------------ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChhh---
Confidence 9999999888876 578899999999999999999999999999999998
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHHH
Q 007580 224 KTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFI 278 (597)
Q Consensus 224 ~~~R~~~~~~~~~~~~lg~~l~p~i~~~i~~~~gw~~~f~i~~~~~~~~~~~~~~ 278 (597)
|++.++++..+.++|..++|.+++.+.+..|||+.|++.++..++..+..+.
T Consensus 131 ---r~~~~g~~~~~~~~g~~ig~~l~~~l~~~~gw~~~f~~~~~~~~l~~~~~~~ 182 (390)
T PRK03545 131 ---KAQALSLLATGTALAMVLGLPLGRVIGQYLGWRTTFLAIGGGALITLLLLIK 182 (390)
T ss_pred ---hhhHHHHHHHHHHHHHHHHhhHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999899999999988766555444433
No 9
>TIGR01299 synapt_SV2 synaptic vesicle protein SV2. This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices.
Probab=99.94 E-value=4.8e-24 Score=239.92 Aligned_cols=173 Identities=16% Similarity=0.084 Sum_probs=141.7
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHhhhhHHHhhcccchHHHHHHHHHHH
Q 007580 67 GWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIY 146 (597)
Q Consensus 67 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~lsD~~~GR~~~~~~~~~l~ 146 (597)
.|+.+..+.+..++..+... +...+.+++.++++++..+.+++.+.+.++..++.+++|+++|| +|||++++++.++.
T Consensus 165 ~~~l~~i~~l~~~~~g~d~~-~is~ilp~i~~~~gls~~~~g~l~s~~~lG~iiG~li~G~LsDR-~GRR~~lii~lil~ 242 (742)
T TIGR01299 165 QWALFFVLGLALMADGVEVF-VVGFVLPSAEKDLCIPDSGKGMLGLIVYLGMMVGAFFWGGLADK-LGRKQCLLICLSVN 242 (742)
T ss_pred HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCcHHHHHHHHHHH
Confidence 44444444454455544433 34455677888999999999999999999999999999999999 89999999999999
Q ss_pred HHHHHHHHHhhhccccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhhchhhhhhhhhhccCCCCCchhhhh
Q 007580 147 LAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTH 226 (597)
Q Consensus 147 ~~g~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~ 226 (597)
.++.++++++ +++..++++|++.|+|.++..++..++++|.+|++.
T Consensus 243 ~i~~ll~afa----------------------------~s~~~llv~R~l~G~g~g~~~p~~~~~isE~~p~~~------ 288 (742)
T TIGR01299 243 GFFAFFSSFV----------------------------QGYGFFLFCRLLSGFGIGGAIPIVFSYFAEFLAQEK------ 288 (742)
T ss_pred HHHHHHHHHH----------------------------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHH------
Confidence 9988888876 467889999999999999999999999999999998
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHhhhc-------------cchHHHHHHHHHHHHHHHHH
Q 007580 227 LDRFFNFFYLSVTVGAIVAFTLVVYIQME-------------HGWGSAFGALAIAMGISNML 275 (597)
Q Consensus 227 R~~~~~~~~~~~~lg~~l~p~i~~~i~~~-------------~gw~~~f~i~~~~~~~~~~~ 275 (597)
|+..++++.....+|.++++.++.++... .+||+.|++.++..++.+++
T Consensus 289 Rg~~~g~~~~~~~iG~ila~~la~~il~~~G~~~~~g~~~~~~gWR~l~~i~~lp~ll~ll~ 350 (742)
T TIGR01299 289 RGEHLSWLCMFWMIGGIYAAAMAWAIIPHYGWSFQMGSAYQFHSWRVFVIVCAFPCVFAIGA 350 (742)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhccccccccccHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999887665532 36899888777655554443
No 10
>PRK05122 major facilitator superfamily transporter; Provisional
Probab=99.94 E-value=1.3e-23 Score=224.06 Aligned_cols=379 Identities=11% Similarity=-0.014 Sum_probs=239.6
Q ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHhhhhHHHhhcccchHHHHHHHHHH
Q 007580 66 GGWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTI 145 (597)
Q Consensus 66 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~lsD~~~GR~~~~~~~~~l 145 (597)
+.++.+..+.+..++..++.....+.++.|+.+++|.+..+.+++.+.+.++..++.++.|+++|| +|||+++.++.++
T Consensus 12 ~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~i~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~Dr-~g~r~~l~~~~~~ 90 (399)
T PRK05122 12 RLTLRIVSIVMFTFISYLTIGLPLAVLPGYVHDQLGFSAFLAGLVISLQYLATLLSRPHAGRYADT-LGPKKAVVFGLCG 90 (399)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHhchhhHhHHhc-cCCcchHHHHHHH
Confidence 344567778888888888888888899999999999999999999999999999999999999999 8999999999998
Q ss_pred HHHHHHHHHHhhhccccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhhchhhhhhhhhhccCCCCCchhhh
Q 007580 146 YLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKT 225 (597)
Q Consensus 146 ~~~g~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~ 225 (597)
+.++.+.+.++...... ...+...+++.|+++|++.+...+.....+.|++|+++
T Consensus 91 ~~~~~~~~~~~~~~~~~--------------------~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~----- 145 (399)
T PRK05122 91 CALSGLLYLLAGLLAAW--------------------PVLSLLLLLLGRLLLGIGESLAGTGSILWGIGRVGALH----- 145 (399)
T ss_pred HHHHHHHHHHhhhhhcc--------------------chhHHHHHHHHHHHHHhhHHhhcchHHHHHHhhcChhh-----
Confidence 88877776654221000 00245678999999999999999999999999999998
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHhcCcccccCCCCCchhhHHHHHHHHHH
Q 007580 226 HLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGTPLYRHRLPGGSPLTRVAQVLVAAFR 305 (597)
Q Consensus 226 ~R~~~~~~~~~~~~lg~~l~p~i~~~i~~~~gw~~~f~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 305 (597)
|++.++++....++|..++|.+++++.+..||++.+++.++..++..+. ..+ .++.++++++..+..+.+...++
T Consensus 146 -r~~~~~~~~~~~~~g~~~g~~l~~~l~~~~g~~~~~~~~~~~~~~~~~~---~~~-~~~~~~~~~~~~~~~~~~~~~~~ 220 (399)
T PRK05122 146 -TGRVISWNGIATYGALAIGAPLGVLLYHWGGLAGLGLLIMLLALLGLLL---ARP-RPAVPPVKGERLPFRRVLGRVWP 220 (399)
T ss_pred -hccchhhhhhhhhHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHH---Hhc-CCCCCCCCccchhHHHHHHHHHH
Confidence 9999999999999999999999999999999999887765543332221 111 11111111110000000000000
Q ss_pred hhhcccCccccccccccCCCcccccCCcccccCCcchhhHHHhhhhhcccCCCCCCccccchhhhhhhHhHhhhhhHHHH
Q 007580 306 KRHAAFSSSELIGLYEVPGKHSAIKGSGKIAHTDDFRCLDKAALELKEDVINPSPWKLCTVTQVEEVKTLVRLVPIPACT 385 (597)
Q Consensus 306 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 385 (597)
.. . . ..+..... ... ..| ......+.. ...........
T Consensus 221 ~~-~---------~----------------------~~~~~~~~--~~~----~~~---~~~~~~~~~-~~~~~~~~~~~ 258 (399)
T PRK05122 221 YG-M---------G----------------------LALASIGF--GTI----ATF---ITLYYAARG-WDGAALALTLF 258 (399)
T ss_pred HH-H---------H----------------------HHHHHHHH--HHH----HHH---HHHHHHHcc-cccchHHHHHH
Confidence 00 0 0 00000000 000 000 000000000 00000000000
Q ss_pred HHHHHHHhcchhhHHHHHhhhcccCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhcCccccccCcCccchH
Q 007580 386 IMLNVILTEFLTLSVQQAYTMNTHMGHPRGASQLQRVGIGLAVSILSVIWAGIFERYRRNYAISHGYEFSFLTAMPDLSA 465 (597)
Q Consensus 386 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~G~~l~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~s~ 465 (597)
.+.... ..+ ..+...| +.+..+.+..+.++.++++...... .+.
T Consensus 259 ~~~~~~-----~~~-~~g~l~~-------r~~~~~~~~~~~~~~~~~~~~~~~~-----------------------~~~ 302 (399)
T PRK05122 259 GVAFVG-----ARL-LFGNLIN-------RLGGLRVAIVSLLVEILGLLLLWLA-----------------------PSP 302 (399)
T ss_pred HHHHHH-----HHH-HHHHHHH-------HhccHHHHHHHHHHHHHHHHHHHHh-----------------------ccH
Confidence 000000 000 0000111 1222233444444444444433332 233
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCCCCCccccCCCC
Q 007580 466 YWLLIQYCLIGIAEVFCIVGLLEFLYEEAPDAMKSIGSAYAALAGGLGCFAASILNSIIKSVTGNPKKGQPNWLAQNINT 545 (597)
Q Consensus 466 ~~l~~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~gl~~~~~~lg~~lg~~l~~~v~~~~g~~~~~~~~w~~~~l~~ 545 (597)
+++++..++.|++.+...|.....+.+..|++.||+++|+++....+|..+++.+.+.+.+..|
T Consensus 303 ~~~~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~g---------------- 366 (399)
T PRK05122 303 WMALIGAALTGFGFSLVFPALGVEAVKRVPPQNRGAALGAYSVFLDLSLGITGPLAGLVASWFG---------------- 366 (399)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC----------------
Confidence 4455667788888888888888888899999999999999999999999999999888776544
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHhhh
Q 007580 546 GRFDYLYWLLAVLSVINFCAFLYSAY 571 (597)
Q Consensus 546 ~~~~~~f~~~a~l~~l~~~~~~~~~~ 571 (597)
++..|++.+++.++++++.+++.+
T Consensus 367 --~~~~~~~~~~~~~~~~~~~~~~~~ 390 (399)
T PRK05122 367 --YPSIFLAAALAALLGLALTWLLYR 390 (399)
T ss_pred --HHHHHHHHHHHHHHHHHHHHHhcc
Confidence 467888888888887766655433
No 11
>PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional
Probab=99.94 E-value=1.8e-23 Score=223.40 Aligned_cols=182 Identities=17% Similarity=0.172 Sum_probs=155.7
Q ss_pred cCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHhhhhHHHhhcccchHHHHHHHH
Q 007580 64 KTGGWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFT 143 (597)
Q Consensus 64 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~lsD~~~GR~~~~~~~~ 143 (597)
.+++|..+....+..+++.+..+...... +.+.+++|.++.+.+++.+.+.++..++.++.|+++|| +|||+++.++.
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr-~g~r~~~~~~~ 87 (406)
T PRK11551 10 SSRLALTIGLCFLVALLEGLDLQSAGVAA-PRMAQEFGLDVAQMGWAFSAGILGLLPGALLGGRLADR-IGRKRILIVSV 87 (406)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCCchhHHHHH
Confidence 34678788888888888888877665554 56678899999999999999999999999999999999 89999999999
Q ss_pred HHHHHHHHHHHHhhhccccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhhchhhhhhhhhhccCCCCCchh
Q 007580 144 TIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDY 223 (597)
Q Consensus 144 ~l~~~g~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~ 223 (597)
++..++.+++.++ .+...+++.|++.|++.+...+...++++|.+|+++
T Consensus 88 ~~~~~~~~~~~~~----------------------------~~~~~~~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~--- 136 (406)
T PRK11551 88 ALFGLFSLATAQA----------------------------WDFPSLLVARLLTGVGLGGALPNLIALTSEAVGPRL--- 136 (406)
T ss_pred HHHHHHHHHHHHh----------------------------ccHHHHHHHHHHHHhhHHHHHHHHHHHHHHHcCHHH---
Confidence 8888888777765 467788999999999999999999999999999998
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHhcC
Q 007580 224 KTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGTP 281 (597)
Q Consensus 224 ~~~R~~~~~~~~~~~~lg~~l~p~i~~~i~~~~gw~~~f~i~~~~~~~~~~~~~~~~~ 281 (597)
|++.+++++....+|..++|.+++.+.+..+|++.|++.+++.++..++.....+
T Consensus 137 ---r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 191 (406)
T PRK11551 137 ---RGTAVSLMYCGVPFGGALASVIGVLAAGDAAWRHIFYVGGVGPLLLVPLLMRWLP 191 (406)
T ss_pred ---HHHHHHHHHHHHHHHHHHHHHHHHHHccccCHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 9999999999999999999999999988899999999877655554444433333
No 12
>PRK14995 methyl viologen resistance protein SmvA; Provisional
Probab=99.94 E-value=2.3e-23 Score=228.61 Aligned_cols=181 Identities=14% Similarity=0.063 Sum_probs=158.3
Q ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHhhhhHHHhhcccchHHHHHHHHHH
Q 007580 66 GGWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTI 145 (597)
Q Consensus 66 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~lsD~~~GR~~~~~~~~~l 145 (597)
++|..+..+++..++..+....+...+| .+.+++|.+..+.+|+.+.|.++...+.+++|+++|| +|||+++.++.++
T Consensus 3 ~~~~~~~~~~~~~~~~~ld~tiv~~a~p-~i~~~l~~s~~~~~~~~~~~~l~~~~~~~~~G~l~D~-~Grk~~l~~~~~~ 80 (495)
T PRK14995 3 RQWLTLVIIVLVYIPVAIDATVLHVAAP-TLSMTLGASGNELLWIIDIYSLVMAGMVLPMGALGDR-IGFKRLLMLGGTL 80 (495)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHhCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHH-hccHHHHHHHHHH
Confidence 3577788888888998888777776655 5578899999999999999999999999999999999 8999999999999
Q ss_pred HHHHHHHHHHhhhccccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhhchhhhhhhhhhccC-CCCCchhh
Q 007580 146 YLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQF-DERSKDYK 224 (597)
Q Consensus 146 ~~~g~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~~-~~~~~~~~ 224 (597)
+.++.++++++ ++...++++|+++|+|.++..+.....+.+.+ |+++
T Consensus 81 ~~~~~~~~~~a----------------------------~~~~~li~~r~l~G~g~~~~~~~~~~~l~~~~~~~~~---- 128 (495)
T PRK14995 81 FGLASLAAAFS----------------------------PTASWLIATRALLAIGAAMIVPATLAGIRATFTEEKQ---- 128 (495)
T ss_pred HHHHHHHHHHc----------------------------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHH----
Confidence 99999999987 57889999999999999999998888887877 5566
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHhcCc
Q 007580 225 THLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGTPL 282 (597)
Q Consensus 225 ~~R~~~~~~~~~~~~lg~~l~p~i~~~i~~~~gw~~~f~i~~~~~~~~~~~~~~~~~~ 282 (597)
|+++++++....++|..+||.+++++.++.||||.|++...+.++.+++.....++
T Consensus 129 --r~~~~g~~~~~~~~g~~~gp~lgg~l~~~~gwr~~f~i~~~~~~~~~~l~~~~l~~ 184 (495)
T PRK14995 129 --RNMALGVWAAVGSGGAAFGPLVGGILLEHFYWGSVFLINVPIVLVVMGLTARYVPR 184 (495)
T ss_pred --HHHHHHHHHHHHHHHHHHHHHHHHHhhccCChHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 99999999999999999999999999999999999999887766665555555444
No 13
>COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism]
Probab=99.93 E-value=1.3e-22 Score=209.29 Aligned_cols=182 Identities=13% Similarity=0.143 Sum_probs=166.6
Q ss_pred cCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHhhhhHHHhhcccchHHHHHHHH
Q 007580 64 KTGGWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFT 143 (597)
Q Consensus 64 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~lsD~~~GR~~~~~~~~ 143 (597)
.+..|..++.+.+..|+....-+....- .+-+.+++|.|..++++.++.|.++..++.|+-..+.|| +.||++++...
T Consensus 8 ~~~~~~~l~aLa~~~F~igttEfv~~gL-Lp~iA~dl~vs~~~aG~lis~yAl~~ai~ap~l~~lt~r-~~Rr~lLl~~l 85 (394)
T COG2814 8 RKPMWLALLALALAAFAIGTTEFVPVGL-LPPIAADLGVSEGAAGQLITAYALGVALGAPLLALLTGR-LERRRLLLGLL 85 (394)
T ss_pred cccchHHHHHHHHHHHHHHhHHHHHHhc-hHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHcc-cchHHHHHHHH
Confidence 3456667888888888887776766555 467889999999999999999999999999999999999 89999999999
Q ss_pred HHHHHHHHHHHHhhhccccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhhchhhhhhhhhhccCCCCCchh
Q 007580 144 TIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDY 223 (597)
Q Consensus 144 ~l~~~g~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~ 223 (597)
.+++++.++++++ +|+.+++++|++.|+..|..++...++.+++.|+++
T Consensus 86 ~lFi~~n~l~alA----------------------------p~f~~Ll~aR~~~g~a~G~f~~i~~~~a~~lvpp~~--- 134 (394)
T COG2814 86 ALFIVSNLLSALA----------------------------PSFAVLLLARALAGLAHGVFWSIAAALAARLVPPGK--- 134 (394)
T ss_pred HHHHHHHHHHHHh----------------------------ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccc---
Confidence 9999999999998 689999999999999999999999999999999999
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHhcC
Q 007580 224 KTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGTP 281 (597)
Q Consensus 224 ~~~R~~~~~~~~~~~~lg~~l~p~i~~~i~~~~gw~~~f~i~~~~~~~~~~~~~~~~~ 281 (597)
|++++++...+..++..+|.+++.++.|.+|||+.|++.+.+.+++++..+...|
T Consensus 135 ---~~~Aiaiv~~G~tlA~v~GvPLGt~ig~~~GWR~~F~~ia~l~ll~~~~~~~~lP 189 (394)
T COG2814 135 ---RGRALALVFTGLTLATVLGVPLGTFLGQLFGWRATFLAIAVLALLALLLLWKLLP 189 (394)
T ss_pred ---hhhHHHHHHHHHHHHHHHhccHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 9999999999999999999999999999999999999999888877777776666
No 14
>PRK12382 putative transporter; Provisional
Probab=99.93 E-value=5.8e-23 Score=218.59 Aligned_cols=374 Identities=11% Similarity=0.022 Sum_probs=230.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHhhhhHHHhhcccchHHHHHHHHHHHHHH
Q 007580 70 AALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAG 149 (597)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~lsD~~~GR~~~~~~~~~l~~~g 149 (597)
.++.+.+..++..++.+...+.++.|+.+++|.|..+.++..+.+.++..++.++.|+++|| +||||++.++.++..++
T Consensus 16 ~~~~~~~~~~~~~~~~~~~~p~l~~~l~~~lg~s~~~~g~~~s~~~~~~~i~~~~~G~l~Dr-~g~r~~l~~~~~~~~~~ 94 (392)
T PRK12382 16 SLFRIAFAVFLTYMTVGLPLPVIPLFVHHDLGFGNTMVGIAVGIQFLATVLTRGYAGRLADQ-YGAKRSALQGMLACGLA 94 (392)
T ss_pred cHHHHHHHHHHHHHHHHHHhhhhhHHHHHhcCCcHHHHHHHHHHHHHHHHHHhhhhhHHHHh-hcchHHHHHHHHHHHHH
Confidence 45556666677777777777888889999999999999999999999999999999999999 89999999998877766
Q ss_pred HHHHHHhhhccccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhhchhhhhhhhhhccCCCCCchhhhhhhh
Q 007580 150 LTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDR 229 (597)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~R~~ 229 (597)
.+...+....+.. ...+...++++|+++|++.+...+...+.+.|.+|+++ |++
T Consensus 95 ~~~~~~~~~~~~~--------------------~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~------r~~ 148 (392)
T PRK12382 95 GLAYLLAAILPVS--------------------APFKFALLVVGRLILGFGESQLLTGALTWGLGLVGPKH------SGK 148 (392)
T ss_pred HHHHHhhhccccc--------------------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCccc------cch
Confidence 5443332111000 00467889999999999999988989999999999998 999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHhcCcccccCCCCCchhhHHHHHHHHHHhhhc
Q 007580 230 FFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGTPLYRHRLPGGSPLTRVAQVLVAAFRKRHA 309 (597)
Q Consensus 230 ~~~~~~~~~~lg~~l~p~i~~~i~~~~gw~~~f~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 309 (597)
+++++..+.++|..++|.+++++.+..||++.+.+..+..++.+. ... +.++.+++++...+..+.....++. ..
T Consensus 149 a~~~~~~~~~~g~~~g~~~~~~l~~~~g~~~~~~~~~~~~~~~~~---~~~-~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 223 (392)
T PRK12382 149 VMSWNGMAMYGALAAGAPLGLLLHSHFGFAALALTTMVLPLLAWA---FNG-TVRKVPAHAGERPSLWSVVGLIWKP-GL 223 (392)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHH---HHH-hccCCCCCcccCchHHHHHHHHHHh-HH
Confidence 999999999999999999999999989999877655443222221 111 1111111100000111100000000 00
Q ss_pred ccCccccccccccCCCcccccCCcccccCCcchhhHHHhhhhhcccCCCCCCccccchhhhhhhHhHhhhhhHHHHHHHH
Q 007580 310 AFSSSELIGLYEVPGKHSAIKGSGKIAHTDDFRCLDKAALELKEDVINPSPWKLCTVTQVEEVKTLVRLVPIPACTIMLN 389 (597)
Q Consensus 310 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 389 (597)
. .. ++. +....+.... .++ .......+ ... . .....+..
T Consensus 224 ~-----~~-l~~----------------------~~~~~~~~~~-----~~~--~~~~~~~~--~~~-~---~~~~~~~~ 262 (392)
T PRK12382 224 G-----LA-LQG----------------------VGFAVIGTFV-----SLY--FASKGWAM--AGF-T---LTAFGGAF 262 (392)
T ss_pred H-----HH-HHH----------------------HHHhHHHHHH-----HHH--HHhcCCch--hHH-H---HHHHHHHH
Confidence 0 00 000 0000000000 000 00000000 000 0 00000000
Q ss_pred HHHhcchhhHHHHHhhhcccCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhcCccccccCcCccchHHHHH
Q 007580 390 VILTEFLTLSVQQAYTMNTHMGHPRGASQLQRVGIGLAVSILSVIWAGIFERYRRNYAISHGYEFSFLTAMPDLSAYWLL 469 (597)
Q Consensus 390 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~G~~l~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~s~~~l~ 469 (597)
.. .+ ...+...| | .+..+.+..+..+.++++...... .+..++.
T Consensus 263 ~~-~~-----~~~g~l~~---r----~g~~~~~~~~~~~~~~~~~~~~~~-----------------------~~~~~~~ 306 (392)
T PRK12382 263 VL-MR-----VLFGWMPD---R----FGGVKVAIVSLLVETVGLLLLWLA-----------------------PTAWVAL 306 (392)
T ss_pred HH-HH-----HHHHHHHH---h----cCCCeehHHHHHHHHHHHHHHHHc-----------------------ccHHHHH
Confidence 00 00 00001111 1 112222334444444444433322 2334445
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCCCCCccccCCCCcchh
Q 007580 470 IQYCLIGIAEVFCIVGLLEFLYEEAPDAMKSIGSAYAALAGGLGCFAASILNSIIKSVTGNPKKGQPNWLAQNINTGRFD 549 (597)
Q Consensus 470 ~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~gl~~~~~~lg~~lg~~l~~~v~~~~g~~~~~~~~w~~~~l~~~~~~ 549 (597)
+..++.+++.+...|.....+.+.+|++.||+++|++++...+|+.+++.+.+.+.+..| +.
T Consensus 307 ~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~ig~~~~g~l~~~~g------------------~~ 368 (392)
T PRK12382 307 AGAALTGAGCSLIFPALGVEVVKRVPSQVRGTALGGYAAFQDIAYGVSGPLAGMLATSFG------------------YP 368 (392)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC------------------ch
Confidence 566778888888888888889999999999999999999999999999999998877554 36
Q ss_pred HHHHHHHHHHHHHHHHHHHhh
Q 007580 550 YLYWLLAVLSVINFCAFLYSA 570 (597)
Q Consensus 550 ~~f~~~a~l~~l~~~~~~~~~ 570 (597)
..|.+.+++.+++.++.++..
T Consensus 369 ~~~~~~~~~~~~~~~~~~~~~ 389 (392)
T PRK12382 369 SVFLAGAISAVLGIIVTILSF 389 (392)
T ss_pred HHHHHHHHHHHHHHHHHHhhc
Confidence 778888888888777665443
No 15
>PRK11646 multidrug resistance protein MdtH; Provisional
Probab=99.93 E-value=5.6e-23 Score=219.45 Aligned_cols=172 Identities=15% Similarity=0.177 Sum_probs=152.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHhhhhHHHhhcccchHHHHHHHHHHHHHHHH
Q 007580 72 LFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLT 151 (597)
Q Consensus 72 ~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~lsD~~~GR~~~~~~~~~l~~~g~~ 151 (597)
+.++...++..++.+.+.+.++.|+++++|++..+.+...+.+.+...+..+++|+++|| +|||+++.++.++..++.+
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~gl~~~~~~l~~~~~~~~~G~l~dr-~g~k~~l~~~~~~~~~~~~ 91 (400)
T PRK11646 13 YFLLIDNMLVVLGFFVVFPLISIRFVDQLGWAAVMVGIALGLRQFIQQGLGIFGGAIADR-FGAKPMIVTGMLMRAAGFA 91 (400)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHhhhhHHHHH-hCchHHHHHHHHHHHHHHH
Confidence 556677888889989999999999999999999999999999999999999999999999 8999999999999999888
Q ss_pred HHHHhhhccccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhhchhhhhhhhhhccCCCCCchhhhhhhhHH
Q 007580 152 GITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFF 231 (597)
Q Consensus 152 ~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~R~~~~ 231 (597)
.+..+ ++.+.+++.|++.|++.+...+...+++.|.+|+++ |++++
T Consensus 92 ~~~~~----------------------------~~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~------~~~a~ 137 (400)
T PRK11646 92 TMAIA----------------------------HEPWLLWLSCILSGLGGTLFDPPRTALVIKLIRPHQ------RGRFF 137 (400)
T ss_pred HHHHh----------------------------ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHH------HHHHH
Confidence 88765 466788899999999999889999999999999988 99999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHh
Q 007580 232 NFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIG 279 (597)
Q Consensus 232 ~~~~~~~~lg~~l~p~i~~~i~~~~gw~~~f~i~~~~~~~~~~~~~~~ 279 (597)
++++...++|..+||.+++++. .+||++.|++.++..++..++....
T Consensus 138 ~~~~~~~~~g~~ig~~l~g~l~-~~g~~~~f~~~~~~~~~~~i~~~~~ 184 (400)
T PRK11646 138 SLLMMQDSAGAVIGALLGSWLL-QYDFRLVCATGAVLFVLAAAFNAWL 184 (400)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-HhhHHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999998 6799999998877665554443333
No 16
>PRK10489 enterobactin exporter EntS; Provisional
Probab=99.93 E-value=4.5e-23 Score=221.41 Aligned_cols=371 Identities=15% Similarity=0.063 Sum_probs=232.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHhhhhHHHhhcccchHHHHHHHHHHHHHHHHHH
Q 007580 74 IFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGI 153 (597)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~lsD~~~GR~~~~~~~~~l~~~g~~~~ 153 (597)
++...++..++.......++.+ .++++.+..+.+++.+.+.++..++.++.|+++|| +|||+++.++.++..++..++
T Consensus 22 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~s~~~~g~~~~~~~l~~~~~~~~~G~l~dr-~g~~~~l~~~~~~~~~~~~~~ 99 (417)
T PRK10489 22 VFIARFISIFGLGLLGVAVPVQ-IQMMTGSTLQVGLSVTLTGGAMFIGLMVGGVLADR-YDRKKLILLARGTCGLGFIGL 99 (417)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-HHHHHCCHHHHHHHHHHHHHHHHHHHHhhHHHhhh-cCCceEEEehHHHHHHHHHHH
Confidence 3344556666654445555555 45678899999999999999999999999999999 899999999888877777665
Q ss_pred HHhhhccccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhhchhhhhhhhhhccCCCCCchhhhhhhhHHHH
Q 007580 154 TLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNF 233 (597)
Q Consensus 154 ~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~R~~~~~~ 233 (597)
++.... .. ++...+++.|++.|++.+...++..+.+.|.+|+++ |++..++
T Consensus 100 ~~~~~~----~~-------------------~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~ 150 (417)
T PRK10489 100 ALNAFL----PE-------------------PSLLAIYLLGLWDGFFGSLGVTALLAATPALVGREN------LMQAGAI 150 (417)
T ss_pred HHHHHc----CC-------------------CcHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCHHH------HHHHHHH
Confidence 542110 00 356778889999999999888999999999999888 9999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHhcCcccccC-CCCCchhhHHHHHHHHHHhhhcccC
Q 007580 234 FYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGTPLYRHRL-PGGSPLTRVAQVLVAAFRKRHAAFS 312 (597)
Q Consensus 234 ~~~~~~lg~~l~p~i~~~i~~~~gw~~~f~i~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 312 (597)
.+...++|..+||.+++++.+..+|+|.|++.++..+++.++.+. .++.++++ +..++..+..+......|++.
T Consensus 151 ~~~~~~~g~~~g~~l~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~-l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---- 225 (417)
T PRK10489 151 TMLTVRLGSVISPALGGLLIAAGGVAWNYGLAAAGTFITLLPLLR-LPALPPPPQPREHPLRSLLAGFRFLLASPV---- 225 (417)
T ss_pred HHHHHhHHHHhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHh-CCCCCCCCcccccchHHHHHHHHHHHcChH----
Confidence 999999999999999999998889999998877666555444332 22221111 011111111000000000000
Q ss_pred ccccccccccCCCcccccCCcccccCCcchhhHHHhhhhhcccCCCCCCccccchhhhhhhHhHhhhhhHHHHHHHHHHH
Q 007580 313 SSELIGLYEVPGKHSAIKGSGKIAHTDDFRCLDKAALELKEDVINPSPWKLCTVTQVEEVKTLVRLVPIPACTIMLNVIL 392 (597)
Q Consensus 313 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 392 (597)
+...+....+........
T Consensus 226 --------------------------------------------------------------~~~~~~~~~~~~~~~~~~ 243 (417)
T PRK10489 226 --------------------------------------------------------------VGGIALLGGLLTMASAVR 243 (417)
T ss_pred --------------------------------------------------------------HHHHHHHHHHHHHHHhHH
Confidence 000000000000000000
Q ss_pred hcchhhHHHHHhhhcccC--------------------CCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhcCc
Q 007580 393 TEFLTLSVQQAYTMNTHM--------------------GHPRGASQLQRVGIGLAVSILSVIWAGIFERYRRNYAISHGY 452 (597)
Q Consensus 393 ~~~~~~~~~~~~~~~~~~--------------------~~~~~~~~~~~i~~G~~l~~~~~~~~~~~~~~~~~~~~~~g~ 452 (597)
...+. +..+....+... +..++.+..+.+..+.++.+++++.....
T Consensus 244 ~~~p~-~~~~~~g~~~~~~g~~~~~~~~g~~ig~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~------------- 309 (417)
T PRK10489 244 VLYPA-LADEVWQMGAAQIGLLYAAVPLGAALGALTSGWLAHSARPGLLMLLSTLGSFLAVGLFGLM------------- 309 (417)
T ss_pred HhhHH-HHHhccCCChhHhHHHHHHHHHHHHHHHHHHHHhhhccCcchHHHHHHHHHHHHHHHHHcc-------------
Confidence 00000 000000000000 01111111222334444444444333221
Q ss_pred cccccCcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCC
Q 007580 453 EFSFLTAMPDLSAYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPDAMKSIGSAYAALAGGLGCFAASILNSIIKSVTGNPK 532 (597)
Q Consensus 453 ~~~~~~~~~~~s~~~l~~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~gl~~~~~~lg~~lg~~l~~~v~~~~g~~~ 532 (597)
.+.+.+....++.|++.+...+...+++.+.+|++.||+++|+++....+|..+|+.+.+.+.+..|
T Consensus 310 ----------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~l~G~l~~~~g--- 376 (417)
T PRK10489 310 ----------PMWILAVLCLALFGYLSAISSLLQYTLLQTQTPDEMLGRINGLWTAQNVTGDAIGAALLGGLGAMMT--- 376 (417)
T ss_pred ----------chHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHhhhHhHHHHHHHHHHHHhc---
Confidence 2334445566677888777778888899999999999999999999999999999999998877554
Q ss_pred CCCCCccccCCCCcchhHHHHHHHHHHHHHHHHHHHhhhcccccccCCCCCc
Q 007580 533 KGQPNWLAQNINTGRFDYLYWLLAVLSVINFCAFLYSAYRYKYRSEQKHGND 584 (597)
Q Consensus 533 ~~~~~w~~~~l~~~~~~~~f~~~a~l~~l~~~~~~~~~~~~~~~~~~~~~~~ 584 (597)
+...++..+++.++..++.+...+++|++++||.+++
T Consensus 377 ---------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 413 (417)
T PRK10489 377 ---------------PVASASASGFGLLIIGVLLLLVLGELRRFRQTPPEVD 413 (417)
T ss_pred ---------------hhhHHHHHHHHHHHHHHHHHHhcccccccccccccCC
Confidence 2345666777777766767777788777777665543
No 17
>PRK10054 putative transporter; Provisional
Probab=99.93 E-value=8.1e-23 Score=217.82 Aligned_cols=176 Identities=15% Similarity=0.127 Sum_probs=153.4
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHhhhhHHHhhcccchHHHHHHHHHHH
Q 007580 67 GWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIY 146 (597)
Q Consensus 67 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~lsD~~~GR~~~~~~~~~l~ 146 (597)
.+|.++.+++..++...+.+.+.++++.|+++++|++..+.++..+.+.++..++.++.|+++|| +|||+++.++.++.
T Consensus 5 ~~~~~~~l~~~~~~~~~g~~~~~~~l~~~l~~~~g~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr-~g~k~~~~~~~~~~ 83 (395)
T PRK10054 5 LRRSTSALLASSLLLTIGRGATLPFMTIYLSRQYSLSVDLIGYAMTIALTIGVVFSLGFGILADK-FDKKRYMLLAITAF 83 (395)
T ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhh-cCcchhHHHHHHHH
Confidence 34467788888899999999999999999999999999999999999999999999999999999 89999999999888
Q ss_pred HHHHHHHHHhhhccccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhhchhhhhhhhhhccCCCCCchhhhh
Q 007580 147 LAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTH 226 (597)
Q Consensus 147 ~~g~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~ 226 (597)
.++.+++.++ ++...+++.+.+.+.+.+...++..+..+|.+|+++
T Consensus 84 ~~~~~~~~~~----------------------------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~------ 129 (395)
T PRK10054 84 ASGFIAIPLV----------------------------NNVTLVVLFFALINCAYSVFSTVLKAWFADNLSSTS------ 129 (395)
T ss_pred HHHHHHHHHH----------------------------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHhH------
Confidence 8888877765 456677778888888888888889999999999888
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHHH
Q 007580 227 LDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFI 278 (597)
Q Consensus 227 R~~~~~~~~~~~~lg~~l~p~i~~~i~~~~gw~~~f~i~~~~~~~~~~~~~~ 278 (597)
|++.+++.+...++|..++|.+++++.+ .+|++.|++.+++.++..++...
T Consensus 130 ~~~~~g~~~~~~~lg~~igp~l~~~l~~-~g~~~~f~~~~~~~~i~~i~~~~ 180 (395)
T PRK10054 130 KTKIFSLNYTMLNIGWTVGPPLGTLLVM-QSINLPFWLAAICSAFPLVFIQI 180 (395)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-hccCcHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999875 69999999887776665544433
No 18
>PRK10504 putative transporter; Provisional
Probab=99.93 E-value=1.2e-22 Score=221.69 Aligned_cols=179 Identities=12% Similarity=0.037 Sum_probs=154.8
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHhhhhHHHhhcccchHHHHHHHHHHHH
Q 007580 68 WIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYL 147 (597)
Q Consensus 68 ~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~lsD~~~GR~~~~~~~~~l~~ 147 (597)
.+.++.+.+..++..+..+.+.+.++.+. +++|.+..+.+++.+.+.++..++.+++|+++|| +|||++++.+.+++.
T Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~~-~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~-~g~r~~~~~~~~~~~ 86 (471)
T PRK10504 9 RWQLWIVAFGFFMQSLDTTIVNTALPSMA-QSLGESPLHMHMVIVSYVLTVAVMLPASGWLADR-VGVRNIFFTAIVLFT 86 (471)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHH-HHhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hchHHHHHHHHHHHH
Confidence 33577788888888888888888777665 5799999999999999999999999999999999 899999999988888
Q ss_pred HHHHHHHHhhhccccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhhchhhhhhhhhhccCCCCCchhhhhh
Q 007580 148 AGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHL 227 (597)
Q Consensus 148 ~g~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~R 227 (597)
++.+++.++ ++...++++|+++|++.+...+...+.+.|.+|+++ |
T Consensus 87 ~~~~~~~~~----------------------------~~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~------~ 132 (471)
T PRK10504 87 LGSLFCALS----------------------------GTLNELLLARVLQGVGGAMMVPVGRLTVMKIVPREQ------Y 132 (471)
T ss_pred HHHHHHHHh----------------------------CCHHHHHHHHHHHHhhhHHHHHHHHHHHHHHcCHHH------H
Confidence 888877765 456788999999999999999999999999999888 9
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHhcCc
Q 007580 228 DRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGTPL 282 (597)
Q Consensus 228 ~~~~~~~~~~~~lg~~l~p~i~~~i~~~~gw~~~f~i~~~~~~~~~~~~~~~~~~ 282 (597)
++.+++++...++|..++|.+++++.++.|||+.|++..+...+..++.....++
T Consensus 133 ~~~~~~~~~~~~~g~~~g~~~~g~l~~~~gw~~~f~~~~~~~~l~~~~~~~~~~~ 187 (471)
T PRK10504 133 MAAMTFVTLPGQVGPLLGPALGGLLVEYASWHWIFLINIPVGIIGAIATLMLMPN 187 (471)
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 9999999999999999999999999999999999998877666555554444443
No 19
>PRK15402 multidrug efflux system translocase MdfA; Provisional
Probab=99.93 E-value=2.4e-22 Score=214.86 Aligned_cols=181 Identities=13% Similarity=0.102 Sum_probs=149.0
Q ss_pred CCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHhhhhHHHhhcccchHHHHHHHHH
Q 007580 65 TGGWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTT 144 (597)
Q Consensus 65 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~lsD~~~GR~~~~~~~~~ 144 (597)
++.+...+.+.+.+++..+....+.+.++ .+.+++|.+..+.++..+.+.++..++.++.|+++|| +|||+++.++.+
T Consensus 9 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~-~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~dr-~g~r~~l~~~~~ 86 (406)
T PRK15402 9 RQALLFPLCLVLFEFATYIANDMIQPGML-AVVEDFNAGAEWVPTSMTAYLAGGMFLQWLLGPLSDR-IGRRPVMLAGVA 86 (406)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhhHhcchH-HHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCChHHHHHHHH
Confidence 34444555555556666666566666555 4668899999999999999999999999999999999 899999999999
Q ss_pred HHHHHHHHHHHhhhccccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhhchhhhhhhhhhccCCCCCchhh
Q 007580 145 IYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYK 224 (597)
Q Consensus 145 l~~~g~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~ 224 (597)
+..++.+++..+ ++...+++.|+++|++.+...+...+.+.|.+|+++
T Consensus 87 ~~~~~~~~~~~~----------------------------~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~---- 134 (406)
T PRK15402 87 FFILTCLAILLA----------------------------QSIEQFTLLRFLQGIGLCFIGAVGYAAIQESFEEAD---- 134 (406)
T ss_pred HHHHHHHHHHHH----------------------------ccHHHHHHHHHHHHhHhhhHHHHHHHHHHHHhChhH----
Confidence 988888887765 456788899999999999988899999999999988
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHhcC
Q 007580 225 THLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGTP 281 (597)
Q Consensus 225 ~~R~~~~~~~~~~~~lg~~l~p~i~~~i~~~~gw~~~f~i~~~~~~~~~~~~~~~~~ 281 (597)
|.+.+++......+|..++|.+++++.++.+||+.|++.++..++..+..+...+
T Consensus 135 --~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~~w~~~~~~~~~~~~~~~~~~~~~~~ 189 (406)
T PRK15402 135 --AIKITALMANVALLAPLLGPLVGAALIHVLPWRGMFVLFAALAALSFFGLWRAMP 189 (406)
T ss_pred --HHHHHHHHHHHHHHHHHHHHHHHHHHHHccCccHHHHHHHHHHHHHHHHHHHhCC
Confidence 8898999888888999999999999999899999999887776665554444333
No 20
>PRK10077 xylE D-xylose transporter XylE; Provisional
Probab=99.92 E-value=3.1e-23 Score=226.56 Aligned_cols=185 Identities=16% Similarity=0.131 Sum_probs=141.7
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--------CCChHHHHHHHHHHHHHHHHHhhhhHHHhhcccchHHH
Q 007580 67 GWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVM--------HKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWT 138 (597)
Q Consensus 67 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~--------~~s~~~a~~~~~~~~~~~~~~~~~~G~lsD~~~GR~~~ 138 (597)
+.+.++...+..+........+.+. .+.+++.+ +.+..+.+++.+.+.++..++++++|+++|| +|||++
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~ig~~~~~~~~G~l~dr-~Grr~~ 87 (479)
T PRK10077 10 IFSITLVATLGGLLFGYDTAVISGT-VESLNTVFVAPQNLSESAANSLLGFCVASALIGCIIGGALGGYCSNR-FGRRDS 87 (479)
T ss_pred HHHHHHHHHHHHHhcCcccceehHh-HHHHHHHhcccccccccCChhHHHHHHHHHHHHHHHHHHHHHHHHHH-hccHHH
Confidence 4555566666666665554433333 34456655 8888999999999999999999999999999 899999
Q ss_pred HHHHHHHHHHHHHHHHHhhhccccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhhchhhhhhhhhhccCCC
Q 007580 139 IAIFTTIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDE 218 (597)
Q Consensus 139 ~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~~~~ 218 (597)
++++.+++.++.+.++++........ .++......++++|+++|++.|+..+...++++|++|+
T Consensus 88 ~~~~~~l~~i~~~~~~~~~~~~~~~~----------------~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~i~e~~~~ 151 (479)
T PRK10077 88 LKIAAVLFFISALGSAWPEFGFTSIG----------------PDNTGYVPEFVIYRIIGGIGVGLASMLSPMYIAEIAPA 151 (479)
T ss_pred HHHHHHHHHHHHHHHHhhcccccccc----------------ccchhHHHHHHHHHHHHhhhHhHHhhHHHHHHHhhCCh
Confidence 99999999988887776421100000 00113456788999999999999999999999999999
Q ss_pred CCchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhh--------hccchHHHHHHHHHHHHHHHHH
Q 007580 219 RSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQ--------MEHGWGSAFGALAIAMGISNML 275 (597)
Q Consensus 219 ~~~~~~~~R~~~~~~~~~~~~lg~~l~p~i~~~i~--------~~~gw~~~f~i~~~~~~~~~~~ 275 (597)
++ |++.++++..+..+|..+++.++..+. +..|||+.|++.++..++..++
T Consensus 152 ~~------rg~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~gWr~~f~~~~~~~~~~~~~ 210 (479)
T PRK10077 152 HI------RGKLVSFNQFAIIFGQLVVYFVNYFIARSGDASWLNTDGWRYMFASEAIPALLFLML 210 (479)
T ss_pred hh------hhHHHHHHHHHHHHHHHHHHHHHHHHhccCcccccccCChHHHHHHHHHHHHHHHHH
Confidence 99 999999999999999999988776553 3569999999877666554443
No 21
>TIGR00903 2A0129 major facilitator 4 family protein. This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix.
Probab=99.92 E-value=2.3e-22 Score=211.89 Aligned_cols=158 Identities=14% Similarity=0.117 Sum_probs=127.1
Q ss_pred HHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHhhhhHHHhhcccchHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCc
Q 007580 89 SVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDN 168 (597)
Q Consensus 89 ~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~lsD~~~GR~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~ 168 (597)
.....+.+.+++|++..+.+++.+.+.+++.++.++.|+++|| +|||+++..+.+....+.. +....
T Consensus 10 ~~~~lp~i~~~~~~s~~~~g~~~s~~~~g~~i~~~~~G~l~Dr-~grr~~~~~~~~~~~~~~~-~~~~~----------- 76 (368)
T TIGR00903 10 FSPVLSLVAEDIDVSKEELGLLAITYPAAFLALTIPSGLLLDR-AFKRWFLFGSLATFAAAAG-RLLDP----------- 76 (368)
T ss_pred HHhhHHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-ccchHHHHHHHHHHHHHHH-HHHHh-----------
Confidence 3444567788999999999999999999999999999999999 7999987665554444332 22210
Q ss_pred ccccccccCCCCCccchhHHHHHHHHHHHHHhhhchhhhhhhhhhccCCCCCchhhhhhhhHHHHHHHHHHHHHHHHHHH
Q 007580 169 CDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTL 248 (597)
Q Consensus 169 c~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~R~~~~~~~~~~~~lg~~l~p~i 248 (597)
.++..+++.|+++|+|.+. .+.....++|++|+++ |++++++...+..+|..+++++
T Consensus 77 ----------------~~~~~l~~~R~l~G~g~~~-~~~~~~~~~~~~~~~~------r~~a~~~~~~~~~lG~~l~~~~ 133 (368)
T TIGR00903 77 ----------------FNYEWLLACQLLAALGQPF-LLNAFAPAASQIREER------RDLVISLLSFAMYLGIIFALAA 133 (368)
T ss_pred ----------------ccHHHHHHHHHHHHhHhHH-HHHHHHHHHHHcCHHH------HHHHHHHHHHHHHHHHHHHHHH
Confidence 3578899999999999986 4555566699999988 9999999999999999999999
Q ss_pred HHHhhhccchHHHHHHHHHHHHHHHHHHHHhcCc
Q 007580 249 VVYIQMEHGWGSAFGALAIAMGISNMLFFIGTPL 282 (597)
Q Consensus 249 ~~~i~~~~gw~~~f~i~~~~~~~~~~~~~~~~~~ 282 (597)
++++.++.|||+.|++.+++.++..++++...|+
T Consensus 134 ~~~l~~~~gWr~~f~~~~~l~~~~~~~~~~~lp~ 167 (368)
T TIGR00903 134 GLKIYTAGGLQLLIIPIAAVAAAGIILVLAALPA 167 (368)
T ss_pred HHHHHHccchHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 9999999999999998777665555555444443
No 22
>TIGR02332 HpaX 4-hydroxyphenylacetate permease. This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially.
Probab=99.92 E-value=2e-22 Score=215.96 Aligned_cols=182 Identities=15% Similarity=0.071 Sum_probs=156.7
Q ss_pred CCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHhhhhHHHhhcccchHHHHHHHHH
Q 007580 65 TGGWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTT 144 (597)
Q Consensus 65 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~lsD~~~GR~~~~~~~~~ 144 (597)
|.+|+.++.+.+..+++.+....+... .+.+++++|++..+.+++.+.+.++..++.++.|+++|| +|||+++..+.+
T Consensus 4 ~~~~~~~~~~~~~~~~~~~d~~~~~~~-~~~l~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr-~G~r~~~~~~~~ 81 (412)
T TIGR02332 4 KLFRRLIIFLFILFIFSFLDRINIGFA-GLTMGKDLGLSATMFGLAATLFYAAYVICGIPSNIMLAI-IGARRWIAGIMV 81 (412)
T ss_pred eehhHHHHHHHHHHHHHHhhhhhHHHH-HHhhHhhcCCCHHHHHHHHHHHHHHHHHHHhhHHHHHHH-hChHHHHHHHHH
Confidence 346777888888778878776665554 458999999999999999999999999999999999999 899999999999
Q ss_pred HHHHHHHHHHHhhhccccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhhchhhhhhhhhhccCCCCCchhh
Q 007580 145 IYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYK 224 (597)
Q Consensus 145 l~~~g~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~ 224 (597)
++.++..+++++ ++...+++.|++.|++.++..|....+++|++|+++
T Consensus 82 ~~~~~~~~~~~~----------------------------~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~---- 129 (412)
T TIGR02332 82 LWGIASTATMFA----------------------------TGPESLYLLRILVGIAEAGFLPGILLYLTFWFPAYF---- 129 (412)
T ss_pred HHHHHHHHHHHh----------------------------cCHHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCHHH----
Confidence 999999998886 567889999999999999999999999999999988
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHhhh------ccchHHHHHHHHHHHHHHHHHHHHhcCc
Q 007580 225 THLDRFFNFFYLSVTVGAIVAFTLVVYIQM------EHGWGSAFGALAIAMGISNMLFFIGTPL 282 (597)
Q Consensus 225 ~~R~~~~~~~~~~~~lg~~l~p~i~~~i~~------~~gw~~~f~i~~~~~~~~~~~~~~~~~~ 282 (597)
|++.+++++....+|..++|.+++++.+ ..|||+.|++.++..++..++.++..++
T Consensus 130 --rg~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~gwr~~f~~~~~~~l~~~~~~~~~~~~ 191 (412)
T TIGR02332 130 --RARANALFMIAMPVTMALGLILSGYILALDGLMALKGWQWLFLLEGFPSVILGVMTWFWLDD 191 (412)
T ss_pred --HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCccchhHHHHHHHHHHHHHHHHHhhccCC
Confidence 9999999999999999999999999864 3699999999877665554444444443
No 23
>PRK11663 regulatory protein UhpC; Provisional
Probab=99.92 E-value=7.5e-22 Score=213.10 Aligned_cols=171 Identities=11% Similarity=0.042 Sum_probs=145.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHhhhhHHHhhcccchHHHHHHHHHHHHH
Q 007580 69 IAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLA 148 (597)
Q Consensus 69 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~lsD~~~GR~~~~~~~~~l~~~ 148 (597)
+..+..++..++..+..+.+...++ .+.+++|++..+.+++.+.+.++..++.+++|+++|| +|||+++.++.++..+
T Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr-~g~r~~~~~~~~~~~~ 100 (434)
T PRK11663 23 HILITMYLGYALFYFTRKSFNAAMP-EMLADLGLSRSDIGLLATLFYITYGVSKFVSGIVSDR-SNARYFMGIGLIATGI 100 (434)
T ss_pred HHHHHHHHHHHHHHHhhhhHHHhhH-HHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhhHHHhh-cCCchhHHHHHHHHHH
Confidence 4445555555666665555555554 4456799999999999999999999999999999999 8999999999999999
Q ss_pred HHHHHHHhhhccccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhhchhhhhhhhhhccCCCCCchhhhhhh
Q 007580 149 GLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLD 228 (597)
Q Consensus 149 g~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~R~ 228 (597)
+.++++++ .+...+++.|++.|++.|...+...++++|++|+++ |+
T Consensus 101 ~~~~~~~~----------------------------~~~~~l~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~------rg 146 (434)
T PRK11663 101 INILFGFS----------------------------SSLWAFALLWVLNAFFQGWGWPVCAKLLTAWYSRTE------RG 146 (434)
T ss_pred HHHHHHHH----------------------------hHHHHHHHHHHHHHHHHHccchHHHHHHHHhCCHHH------HH
Confidence 98888876 567788899999999999999999999999999988 99
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHH
Q 007580 229 RFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNML 275 (597)
Q Consensus 229 ~~~~~~~~~~~lg~~l~p~i~~~i~~~~gw~~~f~i~~~~~~~~~~~ 275 (597)
+.+++++...++|..++|.+++++.+.+|||+.|++.++..++..++
T Consensus 147 ~~~~~~~~~~~~g~~~~~~~~~~l~~~~gw~~~f~~~~i~~~~~~~~ 193 (434)
T PRK11663 147 GWWAIWNTAHNVGGALIPLVVGAIALHYGWRYGMMIAGIIAIVVGLF 193 (434)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999887765544333
No 24
>TIGR00887 2A0109 phosphate:H+ symporter. This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083).
Probab=99.92 E-value=8.3e-23 Score=224.69 Aligned_cols=179 Identities=15% Similarity=0.096 Sum_probs=138.0
Q ss_pred CCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-----hCCChHHHHHHHHHHHHHHHHHhhhhHHHhhcccchHHHH
Q 007580 65 TGGWIAALFIFGNEMAERMAYFGLSVNMVTFMFYV-----MHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTI 139 (597)
Q Consensus 65 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~-----~~~s~~~a~~~~~~~~~~~~~~~~~~G~lsD~~~GR~~~~ 139 (597)
+.+++.+.++.+..+........+....+ .+..+ .+.+..+.+++.+.+.++..++.+++|+++|| +|||+++
T Consensus 12 ~~~~~~~~~~~~~~~~~g~d~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~ig~~~~g~l~d~-~Grr~~~ 89 (502)
T TIGR00887 12 WQHFRAIVIAGVGFFTDSYDLFCISLVTK-MLGYVYYHGKGPLPSSVSAAVNGSASIGTLAGQLFFGWLADK-LGRKRVY 89 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHhccCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHh-hccHHHH
Confidence 34555666666667777766544444333 34443 23455677889999999999999999999999 8999999
Q ss_pred HHHHHHHHHHHHHHHHhhhccccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhhchhhhhhhhhhccCCCC
Q 007580 140 AIFTTIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDER 219 (597)
Q Consensus 140 ~~~~~l~~~g~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~~~~~ 219 (597)
.++.+++.++.++++++... . ...+...++++|+++|++.|+..+....+++|.+|++
T Consensus 90 ~~~~~~~~v~~~~~~~~~~~---~-------------------~~~~~~~~~~~r~l~G~~~g~~~~~~~~~~~e~~p~~ 147 (502)
T TIGR00887 90 GMELIIMIIATVASGLSPGS---S-------------------PKSVMATLCFWRFWLGVGIGGDYPLSAIITSEFATKK 147 (502)
T ss_pred HHHHHHHHHHHHHHHHccCc---c-------------------cchHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhcChh
Confidence 99999999998888765210 0 0023678999999999999999999999999999999
Q ss_pred CchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhh-----------------------ccchHHHHHHHHHHHHHHH
Q 007580 220 SKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQM-----------------------EHGWGSAFGALAIAMGISN 273 (597)
Q Consensus 220 ~~~~~~~R~~~~~~~~~~~~lg~~l~p~i~~~i~~-----------------------~~gw~~~f~i~~~~~~~~~ 273 (597)
+ |++..++++....+|..+++.++.++.. ..+||+.|.+.++..++..
T Consensus 148 ~------Rg~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~WR~~~~~~~ip~~i~~ 218 (502)
T TIGR00887 148 W------RGAMMAAVFAMQGFGILAGAIVALIVLAGFKHSLEAAADEASCTGSCVPAVDYMWRILIGFGAVPALLAL 218 (502)
T ss_pred h------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccccccccccchhcccHHHHHHHHHHHHHHHH
Confidence 9 9999999999999999999988765532 2479999987766554433
No 25
>PRK09705 cynX putative cyanate transporter; Provisional
Probab=99.92 E-value=6.2e-22 Score=210.89 Aligned_cols=151 Identities=12% Similarity=0.106 Sum_probs=132.7
Q ss_pred HHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHhhhhHHHhhcccchHHHHHHHHHHHHHHHHHHHHhhhccccCCC
Q 007580 86 FGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPN 165 (597)
Q Consensus 86 ~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~lsD~~~GR~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~ 165 (597)
+.+.+. .+.+.+++|+|..+.++..+.+.++..++.++.|+++|| +|||+++..+.+++.++.++++++
T Consensus 26 ~~~~~~-lp~i~~~~~~s~~~~g~~~s~~~~~~~l~~~~~g~l~dr-~G~r~~l~~~~~l~~~~~~~~~~a--------- 94 (393)
T PRK09705 26 TSVGPL-LPQLRQASGMSFSVAALLTALPVVTMGGLALAGSWLHQH-VSERRSVAISLLLIAVGALMRELY--------- 94 (393)
T ss_pred hccchh-HHHHHHHhCCCHHHHHHHHHHHHHHHHHHhhhhHHHHHH-hCchHHHHHHHHHHHHHHHHHHHC---------
Confidence 445444 456788999999999999999999999999999999999 899999999999999999999987
Q ss_pred CCcccccccccCCCCCccchhHHHHHHHHHHHHHhhhchhhhhhhhhhccCCCCCchhhhhhhhHHHHHHHHHHHHHHHH
Q 007580 166 QDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVA 245 (597)
Q Consensus 166 ~~~c~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~R~~~~~~~~~~~~lg~~l~ 245 (597)
+++..++++|+++|+|.+...+....++.+++| ++ |+.+++++..+.++|..++
T Consensus 95 -------------------~~~~~ll~~r~l~Gig~~~~~~~~~~~~~~~~~-~~------~~~~~g~~~~~~~~g~~~g 148 (393)
T PRK09705 95 -------------------PQSALLLSSALLGGVGIGIIQAVMPSVIKRRFQ-QR------TPLVMGLWSAALMGGGGLG 148 (393)
T ss_pred -------------------cchHHHHHHHHHHHhHHHHHhhhhhHHHHHHcc-cc------chhHHHHHHHHHHHHHHHH
Confidence 567789999999999999999999999999997 66 8999999999999999999
Q ss_pred HHHHHHhhhcc-chHHHHHHHHHHHHHHH
Q 007580 246 FTLVVYIQMEH-GWGSAFGALAIAMGISN 273 (597)
Q Consensus 246 p~i~~~i~~~~-gw~~~f~i~~~~~~~~~ 273 (597)
+.+++++.++. +||+.+.+.++..++.+
T Consensus 149 ~~~~~~l~~~~~~w~~~~~~~~~~~~~~~ 177 (393)
T PRK09705 149 AAITPWLVQHSETWYQTLAWWALPAVVAL 177 (393)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHH
Confidence 99999988875 89998876555444333
No 26
>TIGR00900 2A0121 H+ Antiporter protein.
Probab=99.92 E-value=6.7e-22 Score=206.94 Aligned_cols=173 Identities=16% Similarity=0.066 Sum_probs=146.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHhhhhHHHhhcccchHHHHHHHHHHHHHHHHHH
Q 007580 74 IFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGI 153 (597)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~lsD~~~GR~~~~~~~~~l~~~g~~~~ 153 (597)
+++..++..++.......++.|.. +++.+..+.+++.+.+.++..++.++.|+++|| +|||+++.++.++..++..++
T Consensus 4 l~~~~~~~~~~~~~~~~~~~~~~~-~~~~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr-~g~r~~~~~~~~~~~~~~~~~ 81 (365)
T TIGR00900 4 LFAAQLISLIGTAITQVALPLYVL-AGTGSASVLSLAALAGMLPYVVLSPIAGALADR-YDRKKVMIGADLIRAVLVAVL 81 (365)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHH-HhhccHHHHHHHHHHHHHHHHHHHHhhhHHHHh-hchhHHHHHHHHHHHHHHHHH
Confidence 456667777776666666676665 589999999999999999999999999999999 899999999998888887777
Q ss_pred HHhhhccccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhhchhhhhhhhhhccCCCCCchhhhhhhhHHHH
Q 007580 154 TLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNF 233 (597)
Q Consensus 154 ~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~R~~~~~~ 233 (597)
.+..... +.+...++++|++.|++.+...+...++++|++|+++ |++.+++
T Consensus 82 ~~~~~~~-----------------------~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~ 132 (365)
T TIGR00900 82 PFVALLG-----------------------GLNIWQVYVLAGILAIAQAFFTPAYQAMLPDLVPEEQ------LTQANSL 132 (365)
T ss_pred HHHHHcC-----------------------CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHH------HHHHHhH
Confidence 7652100 0267889999999999999999999999999999988 9999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHH
Q 007580 234 FYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFF 277 (597)
Q Consensus 234 ~~~~~~lg~~l~p~i~~~i~~~~gw~~~f~i~~~~~~~~~~~~~ 277 (597)
++....+|..++|.+++++.+..||++.|++.++..+++.++.+
T Consensus 133 ~~~~~~~g~~~g~~l~~~l~~~~g~~~~~~~~~~~~~~~~~~~~ 176 (365)
T TIGR00900 133 SQAVRSLFYIVGPGIGGLMYATLGIKWAIWVDAVGFAISALLIV 176 (365)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999987776555544433
No 27
>PRK10213 nepI ribonucleoside transporter; Reviewed
Probab=99.92 E-value=3.2e-21 Score=205.51 Aligned_cols=174 Identities=13% Similarity=0.127 Sum_probs=149.8
Q ss_pred CCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHhhhhHHHhhcccchHHHHHHHHH
Q 007580 65 TGGWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTT 144 (597)
Q Consensus 65 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~lsD~~~GR~~~~~~~~~ 144 (597)
+..|+.+..+....++.....|...+.++. +.+++|+++.+.++.++.+.++..++.++.|+++|| +|||+++.++.+
T Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~Dr-~grr~~~~~~~~ 93 (394)
T PRK10213 16 RPNWSAVFSVAFCVACLIIVEFLPVSLLTP-MAQDLGISEGVAGQSVTVTAFVAMFASLFITQTIQA-TDRRYVVILFAV 93 (394)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhhHHH-HHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcc-cCcHHHHHHHHH
Confidence 446766666666655555555655555544 567899999999999999999999999999999999 899999999999
Q ss_pred HHHHHHHHHHHhhhccccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhhchhhhhhhhhhccCCCCCchhh
Q 007580 145 IYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYK 224 (597)
Q Consensus 145 l~~~g~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~ 224 (597)
+..++.+++.++ ++.+.+++.|+++|++.+...+...+++.|++|+++
T Consensus 94 ~~~~~~~~~~~~----------------------------~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~---- 141 (394)
T PRK10213 94 LLTLSCLLVSFA----------------------------NSFSLLLIGRACLGLALGGFWAMSASLTMRLVPPRT---- 141 (394)
T ss_pred HHHHHHHHHHHH----------------------------ChHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCHhH----
Confidence 999988888776 578899999999999999999999999999999998
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHH
Q 007580 225 THLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNM 274 (597)
Q Consensus 225 ~~R~~~~~~~~~~~~lg~~l~p~i~~~i~~~~gw~~~f~i~~~~~~~~~~ 274 (597)
|+++.+++....++|..++|.+++++.+.+|||+.|++.++..++..+
T Consensus 142 --~~~a~~~~~~~~~~g~~ig~~l~~~l~~~~gw~~~f~~~~~l~~~~~l 189 (394)
T PRK10213 142 --VPKALSVIFGAVSIALVIAAPLGSFLGELIGWRNVFNAAAVMGVLCIF 189 (394)
T ss_pred --HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999987765554433
No 28
>PRK09874 drug efflux system protein MdtG; Provisional
Probab=99.91 E-value=1.8e-21 Score=207.91 Aligned_cols=381 Identities=13% Similarity=0.047 Sum_probs=231.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChHH-----HHHHHHHHHHHHHHHhhhhHHHhhcccchHHHHHHHHH
Q 007580 70 AALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFAD-----SSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTT 144 (597)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~-----a~~~~~~~~~~~~~~~~~~G~lsD~~~GR~~~~~~~~~ 144 (597)
....+++..++..++++...+.++.|++ ++|.+..+ .+++.+.+.++..++.++.|+++|| +|||+++.++.+
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~g~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr-~g~r~~~~~~~~ 92 (408)
T PRK09874 15 NLTVAWLGCFLTGAAFSLVMPFLPLYVE-QLGVTGHSALNMWSGLVFSITFLFSAIASPFWGGLADR-KGRKIMLLRSAL 92 (408)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhHHHHHH-HhCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhh-hCcHHHHHHHHH
Confidence 4555666777888887777788888775 58887554 3788888999999999999999999 899999999998
Q ss_pred HHHHHHHHHHHhhhccccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhhchhhhhhhhhhccCCCCCchhh
Q 007580 145 IYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYK 224 (597)
Q Consensus 145 l~~~g~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~ 224 (597)
+..++.+++... .+...+++.|++.|++.+ ..+.....+.|.+|+++
T Consensus 93 ~~~~~~~~~~~~----------------------------~~~~~~~~~~~~~g~~~~-~~~~~~~~~~~~~~~~~---- 139 (408)
T PRK09874 93 GMGIVMVLMGLA----------------------------QNIWQFLILRALLGLLGG-FVPNANALIATQVPRNK---- 139 (408)
T ss_pred HHHHHHHHHHHH----------------------------hhHHHHHHHHHHHHHhhh-hHHhHHHHHHHhcCHhh----
Confidence 888888777665 467788999999999865 56777888999999888
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHhcCcccccCCCCCchhhHHHHHHHHH
Q 007580 225 THLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGTPLYRHRLPGGSPLTRVAQVLVAAF 304 (597)
Q Consensus 225 ~~R~~~~~~~~~~~~lg~~l~p~i~~~i~~~~gw~~~f~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 304 (597)
|++..++++...++|..++|.+++++.+..+|++.|++.++..++..++.+...++..+..++.+. .+..+. ....
T Consensus 140 --~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~-~~~~ 215 (408)
T PRK09874 140 --SGWALGTLSTGGVSGALLGPLAGGLLADSYGLRPVFFITASVLFLCFLVTLFCIRENFQPVSKKEM-LHMREV-VTSL 215 (408)
T ss_pred --hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhccCcccccchhh-hHHHHH-HHhC
Confidence 999999999999999999999999999989999999988876665555444433322111000000 000000 0000
Q ss_pred HhhhcccCccccccccccCCCcccccCCcccccCCcchhhHHHhhhhhcccCCCCCCccccchhhhhhhHhHhhhhhHHH
Q 007580 305 RKRHAAFSSSELIGLYEVPGKHSAIKGSGKIAHTDDFRCLDKAALELKEDVINPSPWKLCTVTQVEEVKTLVRLVPIPAC 384 (597)
Q Consensus 305 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 384 (597)
| +......+-..............++ ......+.......... ..
T Consensus 216 ~-------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~-~~ 260 (408)
T PRK09874 216 K-------------------------------NPKLVLSLFVTTLIIQVATGSIAPI---LTLYVRELAGNVSNIAF-IS 260 (408)
T ss_pred c-------------------------------CCchHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHhccchHHHH-HH
Confidence 0 0000000000000000000000000 00000000000000000 00
Q ss_pred HHHHHHHHhcchhhHHHHHhhhcccCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhcCccccccCcCccch
Q 007580 385 TIMLNVILTEFLTLSVQQAYTMNTHMGHPRGASQLQRVGIGLAVSILSVIWAGIFERYRRNYAISHGYEFSFLTAMPDLS 464 (597)
Q Consensus 385 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~G~~l~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~s 464 (597)
. +...... ... ..... ... +..++.+..+.+..+.++..++++..... .+
T Consensus 261 g-~~~~~~~-l~~-~~~~~-~~g---~l~dr~g~~~~~~~~~~~~~~~~~~~~~~-----------------------~~ 310 (408)
T PRK09874 261 G-MIASVPG-VAA-LLSAP-RLG---KLGDRIGPEKILITALIFSVLLLIPMSFV-----------------------QT 310 (408)
T ss_pred H-HHHHHHH-HHH-HHHHH-HHH---HHHhccccchhHHHHHHHHHHHHHHHHHh-----------------------cc
Confidence 0 0000000 000 00000 000 11122222233344444443333332222 23
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCCCCCccccCCC
Q 007580 465 AYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPDAMKSIGSAYAALAGGLGCFAASILNSIIKSVTGNPKKGQPNWLAQNIN 544 (597)
Q Consensus 465 ~~~l~~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~gl~~~~~~lg~~lg~~l~~~v~~~~g~~~~~~~~w~~~~l~ 544 (597)
.+.+....++.|++.+...|...+.+.+..|++.+|..+++++....+|..+|+.+.+.+.+..|
T Consensus 311 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~gp~~~G~l~~~~g--------------- 375 (408)
T PRK09874 311 PLQLGILRFLLGAADGALLPAVQTLLVYNSSNQIAGRIFSYNQSFRDIGNVTGPLMGAAISANYG--------------- 375 (408)
T ss_pred HHHHHHHHHHHHhhhHhhHHHHHHHHHHhCCcccceeeehHHHHHHHHHHHhhHHHHHHHHhhcc---------------
Confidence 34455566778888889999999999999999999999999999999999999999998776443
Q ss_pred CcchhHHHHHHHHHHHHHHHHHHHhhhc
Q 007580 545 TGRFDYLYWLLAVLSVINFCAFLYSAYR 572 (597)
Q Consensus 545 ~~~~~~~f~~~a~l~~l~~~~~~~~~~~ 572 (597)
+...|++.+++.+++.++.++..++
T Consensus 376 ---~~~~f~~~~~~~l~~~~~~~~~~~~ 400 (408)
T PRK09874 376 ---FRAVFLVTAGVVLFNAVYSWNSLRR 400 (408)
T ss_pred ---hhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4678888888888887776655443
No 29
>TIGR00893 2A0114 d-galactonate transporter.
Probab=99.91 E-value=1.2e-21 Score=206.64 Aligned_cols=156 Identities=20% Similarity=0.177 Sum_probs=139.0
Q ss_pred HHHHHHHHhhCCChHHHHHHHHHHHHHHHHHhhhhHHHhhcccchHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCccc
Q 007580 91 NMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCD 170 (597)
Q Consensus 91 ~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~lsD~~~GR~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~c~ 170 (597)
...+++.+++|.+..+.+++.+.+.++..++.++.|+++|| +|||+++.++.++..++..+++++
T Consensus 15 ~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~-~g~r~~~~~~~~~~~~~~~~~~~~-------------- 79 (399)
T TIGR00893 15 FAAPMLQEDLGLSAAQYGYVFSAFSWGYVVGQFPGGWLLDR-FGARKTLAVFIVIWGVFTGLQAFA-------------- 79 (399)
T ss_pred HhHHHHHHhhCCChhhHHHHHHHHHHHHHHHHHhHHHHHHh-cCcceeeHHHHHHHHHHHHHHHHH--------------
Confidence 33456889999999999999999999999999999999999 899999999999999998888876
Q ss_pred ccccccCCCCCccchhHHHHHHHHHHHHHhhhchhhhhhhhhhccCCCCCchhhhhhhhHHHHHHHHHHHHHHHHHHHHH
Q 007580 171 RISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVV 250 (597)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~R~~~~~~~~~~~~lg~~l~p~i~~ 250 (597)
.+...++++|++.|++.+...+....++.|.+|+++ |++.++++....++|..++|.+++
T Consensus 80 --------------~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~------r~~~~~~~~~~~~~g~~~~~~~~~ 139 (399)
T TIGR00893 80 --------------GAYVSLYILRVLLGAAEAPFFPGIILIVASWFPASE------RATAVSIFNSAQGLGGIIGGPLVG 139 (399)
T ss_pred --------------cCHHHHHHHHHHHHHHHHhhhhHHHHHHHHhCCHHH------HHHHHHHHHHhchHHHHHHHHHHH
Confidence 467889999999999999999999999999999988 999999999999999999999999
Q ss_pred HhhhccchHHHHHHHHHHHHHHHHHHHHhcC
Q 007580 251 YIQMEHGWGSAFGALAIAMGISNMLFFIGTP 281 (597)
Q Consensus 251 ~i~~~~gw~~~f~i~~~~~~~~~~~~~~~~~ 281 (597)
++.+..+|++.|++.++..++..++.+...+
T Consensus 140 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (399)
T TIGR00893 140 WILIHFSWQWAFIIEGVLGIIWGVLWLKFIP 170 (399)
T ss_pred HHHHhCCchHHHHHHHHHHHHHHHHhhheec
Confidence 9999999999999887766655554444333
No 30
>PRK10642 proline/glycine betaine transporter; Provisional
Probab=99.91 E-value=4.8e-21 Score=210.00 Aligned_cols=175 Identities=17% Similarity=0.120 Sum_probs=132.2
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChHH-HHH-----HHHHHHHHHHHHhhhhHHHhhcccchHHHHHH
Q 007580 68 WIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFAD-SSN-----AVNNFLGISQASSVLGGFLADAYLGRYWTIAI 141 (597)
Q Consensus 68 ~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~-a~~-----~~~~~~~~~~~~~~~~G~lsD~~~GR~~~~~~ 141 (597)
++.++...+..+++.+.+. +.....+++.++++.+... ..+ +.+...++..++.+++|+++|| +|||+++.+
T Consensus 15 ~~~~~~~~~g~~~~~~d~~-~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ig~~~~G~l~Dr-~Grr~~l~~ 92 (490)
T PRK10642 15 RKAITAASLGNAMEWFDFG-VYGFVAYALGKVFFPGADPSVQMIAALATFSVPFLIRPLGGLFFGMLGDK-YGRQKILAI 92 (490)
T ss_pred HHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHhhCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cccHHHHHH
Confidence 4566666777788887754 4555667888888643321 111 2466778899999999999999 899999999
Q ss_pred HHHHHHHHHHHHHHhhhccccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhhchhhhhhhhhhccCCCCCc
Q 007580 142 FTTIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSK 221 (597)
Q Consensus 142 ~~~l~~~g~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~ 221 (597)
+.+++.++.++++++.++.... -.....+++.|+++|+|.|+..+...++++|++|+++
T Consensus 93 ~~~l~~i~~~~~a~~~~~~~~g--------------------~~a~~~l~~~R~l~G~g~g~~~~~~~~~~~e~~p~~~- 151 (490)
T PRK10642 93 TIVIMSISTFCIGLIPSYATIG--------------------IWAPILLLLCKMAQGFSVGGEYTGASIFVAEYSPDRK- 151 (490)
T ss_pred HHHHHHHHHHHHHhcccHHHHH--------------------HHHHHHHHHHHHHHHhHhHhhHHHHHHHHHHhCCCCC-
Confidence 9999999999999872210000 0001248899999999999999999999999999999
Q ss_pred hhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhh--------hccchHHHHHHHHHHHH
Q 007580 222 DYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQ--------MEHGWGSAFGALAIAMG 270 (597)
Q Consensus 222 ~~~~~R~~~~~~~~~~~~lg~~l~p~i~~~i~--------~~~gw~~~f~i~~~~~~ 270 (597)
|+...++...+..+|..+++.+...+. .++|||+.|++.++..+
T Consensus 152 -----Rg~~~~~~~~~~~~G~~lg~~~~~~~~~~~~~~~~~~~gWR~~f~i~~~~~l 203 (490)
T PRK10642 152 -----RGFMGSWLDFGSIAGFVLGAGVVVLISTIVGEANFLDWGWRIPFFIALPLGI 203 (490)
T ss_pred -----CcHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHhcCccHHHHHHHHHHHHH
Confidence 999999988888888888876654442 25799999998665433
No 31
>TIGR00892 2A0113 monocarboxylate transporter 1.
Probab=99.91 E-value=8.8e-22 Score=213.74 Aligned_cols=176 Identities=14% Similarity=0.082 Sum_probs=137.4
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHhhhhHHHhhcccchHHHHHHHHHHH
Q 007580 67 GWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIY 146 (597)
Q Consensus 67 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~lsD~~~GR~~~~~~~~~l~ 146 (597)
+|..+...++..+......+++... .+.+.+++|.+.++.+++.+.+.++..++.+++|+++|| +|||++++.+.++.
T Consensus 17 ~w~i~~~~~~~~~~~~~~~~~~~~~-~~~i~~~~g~s~~~~~~~~s~~~~~~~~~~~~~G~l~dr-~g~r~~l~~~~~~~ 94 (455)
T TIGR00892 17 GWVVLGATFVSIGFSYAFPKAVTVF-FKELQQIFQATYSETAWISSIMLAVLYAGGPISSILVNR-FGCRPVVIAGGLLA 94 (455)
T ss_pred chHHHHHHHHHHHHHHhhhcchhhh-HHHHHHHhCcchhHHHHHHHHHHHHHHHhhHHHHHHHHH-cCchHHHHhhHHHH
Confidence 4544444444333222222333333 456678999999999999999999999999999999999 89999999999999
Q ss_pred HHHHHHHHHhhhccccCCCCCcccccccccCCCCCccchhHHHHHH-HHHHHHHhhhchhhhhhhhhhccCCCCCchhhh
Q 007580 147 LAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYT-VLYITGFGAAGIRPCVSSFGADQFDERSKDYKT 225 (597)
Q Consensus 147 ~~g~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~l~~-~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~ 225 (597)
.++.++++++ .+...+++ .|++.|++.+...+...+++.++++ ++
T Consensus 95 ~~~~~~~~~~----------------------------~~~~~l~~~~~~l~G~~~~~~~~~~~~~~~~~~~-~~----- 140 (455)
T TIGR00892 95 SLGMILASFS----------------------------SNVIELYLTAGFITGLGLAFNFQPSLTMLGKYFY-RR----- 140 (455)
T ss_pred HHHHHHHHHh----------------------------hhHHHHHHHHHHHHHhcchhhhhHHHHHHHHHHH-hh-----
Confidence 9888888776 34555554 5688899998776677788889885 66
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHh
Q 007580 226 HLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIG 279 (597)
Q Consensus 226 ~R~~~~~~~~~~~~lg~~l~p~i~~~i~~~~gw~~~f~i~~~~~~~~~~~~~~~ 279 (597)
|+++.++.+.+..+|..++|.+++++.+.+|||+.|++.+++.+++.+..++.
T Consensus 141 -r~~a~g~~~~~~~~g~~~~~~l~~~l~~~~gwr~~f~~~~~~~~~~~v~~~~~ 193 (455)
T TIGR00892 141 -RPLANGLAMAGSPVFLSTLAPLNQYLFESFGWRGSFLILGGLLLHCCVCGALM 193 (455)
T ss_pred -HHHHHHHHHhcccHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999888766555444443
No 32
>PRK15403 multidrug efflux system protein MdtM; Provisional
Probab=99.91 E-value=1e-20 Score=202.85 Aligned_cols=166 Identities=14% Similarity=0.090 Sum_probs=140.4
Q ss_pred HHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHhhhhHHHhhcccchHHHHHHHHHHHHHHHHHHHHhhhcc
Q 007580 81 ERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMK 160 (597)
Q Consensus 81 ~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~lsD~~~GR~~~~~~~~~l~~~g~~~~~~~~~~~ 160 (597)
..+......+.++ .+.+++|.+..+.++.++.|.++..++.+++|+++|| +|||+++..+.+++.++.+.+.++
T Consensus 28 ~~~~~~~~~p~l~-~i~~~~~~~~~~~~~~~s~~~~~~~~~~~~~G~l~dr-~Grr~~l~~~~~~~~~~~~~~~~a---- 101 (413)
T PRK15403 28 AYLTTDLIQPGII-NVVRDFNADVSLAPASVSLYLAGGMALQWLLGPLSDR-IGRRPVLITGALIFTLACAATLFT---- 101 (413)
T ss_pred HHHHHHhhccCHH-HHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhhHHHHH-cCchHHHHHHHHHHHHHHHHHHHc----
Confidence 3334333334433 4788999999999999999999999999999999999 899999999999999999888876
Q ss_pred ccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhhchhhhhhhhhhccCCCCCchhhhhhhhHHHHHHHHHHH
Q 007580 161 VFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTV 240 (597)
Q Consensus 161 ~~~~~~~~c~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~R~~~~~~~~~~~~l 240 (597)
++...++++|+++|++.+...+.....+.|.+|+++ |.+.++++....++
T Consensus 102 ------------------------~~~~~l~~~r~l~Gi~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~ 151 (413)
T PRK15403 102 ------------------------TSMTQFLIARFIQGTSICFIATVGYVTVQEAFGQTK------GIKLMAIITSIVLV 151 (413)
T ss_pred ------------------------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHH------HHHHHHHHHHHHHH
Confidence 567889999999999998777777888999999988 99999999999999
Q ss_pred HHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHhcCc
Q 007580 241 GAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGTPL 282 (597)
Q Consensus 241 g~~l~p~i~~~i~~~~gw~~~f~i~~~~~~~~~~~~~~~~~~ 282 (597)
|..+||.+++++.++.|||+.|++.++..+++.++.+...++
T Consensus 152 ~~~~g~~lg~~l~~~~gw~~~f~~~~~~~~i~~~~~~~~lp~ 193 (413)
T PRK15403 152 APIIGPLSGAALMHFVHWKVLFAIIAVMGLIAFVGLLLAMPE 193 (413)
T ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 999999999999988899999999887766665544443443
No 33
>TIGR00899 2A0120 sugar efflux transporter. This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria.
Probab=99.90 E-value=6.6e-21 Score=200.92 Aligned_cols=173 Identities=11% Similarity=0.039 Sum_probs=139.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHhhhhHHHhhcccchHHHHHH-HHHHHHHHHHHH
Q 007580 75 FGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAI-FTTIYLAGLTGI 153 (597)
Q Consensus 75 ~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~lsD~~~GR~~~~~~-~~~l~~~g~~~~ 153 (597)
++..++..++.....+.++.|+.+++|.+..+.+++.+.+.+...+..++.|+++|| +||||.+++ +.++..++.+++
T Consensus 3 ~~~~~~~~~~~~~~~~~l~~~l~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~Dr-~g~r~~~~~~~~~~~~~~~~~~ 81 (375)
T TIGR00899 3 LLVAFLTGIAGALQFPTLSLFLSEEVRARPAMIGLFYTGSAIVGIAVSQLLATRSDY-QGDRKGLILFCCLLAALACLLF 81 (375)
T ss_pred hHHHHHHHHHHHHHhhHHHHHHHcccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhc-cCCchHHHHHHHHHHHHHHHHH
Confidence 345677788888888999999999999999999999999999999999999999999 899887655 455555566666
Q ss_pred HHhhhccccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhhchhhhhhhhhhccCCCCCchhhhhhhhH--H
Q 007580 154 TLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRF--F 231 (597)
Q Consensus 154 ~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~R~~~--~ 231 (597)
+.+ +++..+++.|+++|.+.+...|...++..|..|++. |... .
T Consensus 82 ~~~----------------------------~~~~~l~~~~~~~g~~~~~~~p~~~~~~~~~~~~~~------~~~~~~~ 127 (375)
T TIGR00899 82 AWN----------------------------RNYFLLLVLGVLLSSFASTANPQLFALAREHADRTG------REAVMFS 127 (375)
T ss_pred Hhc----------------------------chHHHHHHHHHHHHhhhhhhHHHHHHHHHHHhhhcc------hhhHHHH
Confidence 654 456778888988888888888888888888887665 5543 5
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHhcCc
Q 007580 232 NFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGTPL 282 (597)
Q Consensus 232 ~~~~~~~~lg~~l~p~i~~~i~~~~gw~~~f~i~~~~~~~~~~~~~~~~~~ 282 (597)
++.....++|..++|.+++++.+..|||+.|++.++..++..++.+...++
T Consensus 128 ~~~~~~~~~g~~ig~~~~~~l~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~ 178 (375)
T TIGR00899 128 SVMRAQISLAWVIGPPLAFWLALGFGFTVMFLTAALAFVLCGVLVWLFLPS 178 (375)
T ss_pred HHHHHHHhHHHHHhhhHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 777778899999999999999998999999999887666555554443443
No 34
>TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily. This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli.
Probab=99.90 E-value=1.8e-21 Score=212.76 Aligned_cols=177 Identities=16% Similarity=0.130 Sum_probs=152.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHhhhhHHHhhcccchHHHHHHHHHHHHHH
Q 007580 70 AALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAG 149 (597)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~lsD~~~GR~~~~~~~~~l~~~g 149 (597)
.+..+++..++..+....+.. ..+++.+++|.+..+.+++.+.+.++..++.++.|+++|| +|||+++.++.+++.++
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~-~~p~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr-~g~r~~~~~~~~~~~~~ 80 (485)
T TIGR00711 3 LTIVLMLGTFMAVLDSTIVNV-AIPTIAGDLGSSLSQVQWVITSYMLANAISIPLTGWLAKR-FGTRRLFLISTFAFTLG 80 (485)
T ss_pred HHHHHHHHHHHHHHHHHHHHH-HHHHHHHhcCCChhhhhHHHHHHHHHHHHHHHhHHHHHHH-hCcHHHHHHHHHHHHHH
Confidence 455566666777777554444 4566778999999999999999999999999999999999 89999999999999999
Q ss_pred HHHHHHhhhccccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhhchhhhhhhhhhccCCCCCchhhhhhhh
Q 007580 150 LTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDR 229 (597)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~R~~ 229 (597)
.++++.+ ++...++++|+++|++.+...+...+++.|.+|+++ |++
T Consensus 81 ~~~~~~~----------------------------~~~~~l~~~~~~~G~~~~~~~~~~~~~i~~~~~~~~------r~~ 126 (485)
T TIGR00711 81 SLLCGVA----------------------------PNLELMIIFRVIQGFGGGPLIPLSFSTLLNIYPPEK------RGR 126 (485)
T ss_pred HHHHhCc----------------------------CCHHHHHHHHHHHHhhhhhHHHHHHHHHHHHCCHHH------HHH
Confidence 9988876 467889999999999999999999999999999988 999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHhcCc
Q 007580 230 FFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGTPL 282 (597)
Q Consensus 230 ~~~~~~~~~~lg~~l~p~i~~~i~~~~gw~~~f~i~~~~~~~~~~~~~~~~~~ 282 (597)
++++++....+|..++|.+++++.++.||||.|++.++..++..++.+...++
T Consensus 127 ~~~~~~~~~~~g~~~g~~~~~~l~~~~~w~~~f~~~~~~~~~~~~~~~~~~~~ 179 (485)
T TIGR00711 127 AMAIWGLTVLVAPALGPTLGGWIIENYHWRWIFLINVPIGIIVVVVAFFILPR 179 (485)
T ss_pred HHHHHHHHHHHHhhhhhccHhHhccCcCceehhhhhhHHHHHHHHHHHHHcCC
Confidence 99999999999999999999999999999999998877666555554444443
No 35
>PRK10091 MFS transport protein AraJ; Provisional
Probab=99.90 E-value=1.3e-20 Score=199.98 Aligned_cols=177 Identities=13% Similarity=0.104 Sum_probs=152.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHhhhhHHHhhcccchHHHHHHHHHHHHH
Q 007580 69 IAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLA 148 (597)
Q Consensus 69 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~lsD~~~GR~~~~~~~~~l~~~ 148 (597)
+.++.+.+..++.....+...+.+ +.+.+++|.+..+.++..+.+.++..++.++.|+++|| +|||+++.++.++..+
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~l-~~~~~~~g~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr-~g~r~~~~~~~~~~~~ 80 (382)
T PRK10091 3 KVILSLALGTFGLGMAEFGIMGVL-TELAHDVGISIPAAGHMISYYALGVVVGAPIIALFSSR-YSLKHILLFLVALCVI 80 (382)
T ss_pred chHHHHHHHHHHHHhhHHHHHhCh-HHHHHHcCCCHHHHhHHHHHHHHHHHHHHHHHHHHHcc-CccHHHHHHHHHHHHH
Confidence 356667777777777766666655 45678899999999999999999999999999999999 8999999999999999
Q ss_pred HHHHHHHhhhccccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhhchhhhhhhhhhccCCCCCchhhhhhh
Q 007580 149 GLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLD 228 (597)
Q Consensus 149 g~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~R~ 228 (597)
+.++++++ ++.+.+++.|++.|++.+...+....++.|++|+++ |+
T Consensus 81 ~~~l~~~~----------------------------~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~------~~ 126 (382)
T PRK10091 81 GNAMFTLS----------------------------SSYLMLAIGRLVSGFPHGAFFGVGAIVLSKIIKPGK------VT 126 (382)
T ss_pred HHHHHHHh----------------------------CcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCChHH------hh
Confidence 99988876 567899999999999999988888999999999888 99
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHhcC
Q 007580 229 RFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGTP 281 (597)
Q Consensus 229 ~~~~~~~~~~~lg~~l~p~i~~~i~~~~gw~~~f~i~~~~~~~~~~~~~~~~~ 281 (597)
+.++++..+..+|..++|.+++++.+..+||+.|++.++..++..+..+...|
T Consensus 127 ~~~~~~~~~~~~g~~~g~~l~~~l~~~~gwr~~f~~~~~~~~~~~~~~~~~lp 179 (382)
T PRK10091 127 AAVAGMVSGMTVANLLGIPLGTYLSQEFSWRYTFLLIAVFNIAVLASIYFWVP 179 (382)
T ss_pred HHHHHHHHHHHHHHHHhccHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 99999999999999999999999999899999999988766555444443333
No 36
>PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms. These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A.
Probab=99.90 E-value=7.2e-22 Score=205.82 Aligned_cols=171 Identities=20% Similarity=0.245 Sum_probs=148.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHhhhhHHHhhcccchHHHHHHHHHHHHHHHHHHH
Q 007580 75 FGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGIT 154 (597)
Q Consensus 75 ~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~lsD~~~GR~~~~~~~~~l~~~g~~~~~ 154 (597)
++..++..++...+.+.++.++.+++|.+..+.+++.+.+.++..++.++.|+++|| +|||+++.++.++..++..++.
T Consensus 2 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr-~g~r~~l~~~~~~~~~~~~~~~ 80 (352)
T PF07690_consen 2 FLAFFLSGFGFSIISPALPLYLAEELGLSPSQIGLLFSAFFLGSALFSPFAGYLSDR-FGRRRVLIIGLLLFALGSLLLA 80 (352)
T ss_dssp HHHHHHHHHHHHHHHHHHH-HHHCCSTTTSHCHHHHHHHHHHHHHHHHHHHHHHHHH-S-HHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCCeeeEeehhhhhhhHHHHhh
Confidence 455677777767667776668899999999999999999999999999999999999 8999999999999999866665
Q ss_pred HhhhccccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhhchhhhhhhhhhccCCCCCchhhhhhhhHHHHH
Q 007580 155 LCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFF 234 (597)
Q Consensus 155 ~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~R~~~~~~~ 234 (597)
++ .+...++++|++.|++.+...+...+++.|.+|+++ |++.+++.
T Consensus 81 ~~----------------------------~~~~~~~~~~~l~g~~~~~~~~~~~~~i~~~~~~~~------~~~~~~~~ 126 (352)
T PF07690_consen 81 FA----------------------------SNFWLLLIARFLLGIGSGFFSPASNALIADWFPPEE------RGRAFGIL 126 (352)
T ss_dssp HH----------------------------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCTCC------HHHHHHHH
T ss_pred hh----------------------------hhHHHHhhhccccccccccccccccccccccchhhh------hhhccccc
Confidence 54 244589999999999999999999999999999998 99999999
Q ss_pred HHHHHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHhc
Q 007580 235 YLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGT 280 (597)
Q Consensus 235 ~~~~~lg~~l~p~i~~~i~~~~gw~~~f~i~~~~~~~~~~~~~~~~ 280 (597)
+...++|..++|.+++++.+..+||+.|++.++..++..++.....
T Consensus 127 ~~~~~~g~~~g~~l~~~l~~~~~~~~~~~~~~~~~~~~~il~~~~~ 172 (352)
T PF07690_consen 127 SAGFSLGSILGPLLGGFLISYFGWRWAFLISAILSLIAAILFILFL 172 (352)
T ss_dssp HHHHHHHHHHHHHHHHHCCCHCHHCCHHHHHHHHHHHHHHHHHCCC
T ss_pred cchhhhhhhcccchhhhhhhccccccccccccchhhhhhhhHhhhh
Confidence 9999999999999999999889999999998888777766433333
No 37
>TIGR00879 SP MFS transporter, sugar porter (SP) family. This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083)
Probab=99.90 E-value=7.9e-22 Score=213.87 Aligned_cols=151 Identities=18% Similarity=0.255 Sum_probs=128.5
Q ss_pred HHHHHHhhCCC--------hHHHHHHHHHHHHHHHHHhhhhHHHhhcccchHHHHHHHHHHHHHHHHHHHHhhhccccCC
Q 007580 93 VTFMFYVMHKS--------FADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMP 164 (597)
Q Consensus 93 ~~yl~~~~~~s--------~~~a~~~~~~~~~~~~~~~~~~G~lsD~~~GR~~~~~~~~~l~~~g~~~~~~~~~~~~~~~ 164 (597)
.+.+..+++.+ ..+.+++.+.+.++..++.++.|+++|| +|||++++++.+++.++.+++.+....
T Consensus 51 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~-~grr~~~~~~~~~~~~~~~~~~~~~~~----- 124 (481)
T TIGR00879 51 LALPAFEFKFTSANSDSYSSSLWGLVVSIFLVGGFIGALFAGWLSDR-FGRKKSLLIIALLFVIGAILMGLAAFA----- 124 (481)
T ss_pred hhcHHHHHhcCCcccCCCChhHHHHHHHHHHHHHHHHHHHhhHhhhh-hhhHHHHHHHHHHHHHHHHHHHHhccc-----
Confidence 34455566666 7899999999999999999999999999 899999999999999998888765220
Q ss_pred CCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhhchhhhhhhhhhccCCCCCchhhhhhhhHHHHHHHHHHHHHHH
Q 007580 165 NQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIV 244 (597)
Q Consensus 165 ~~~~c~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~R~~~~~~~~~~~~lg~~l 244 (597)
.+...++++|+++|+|.+...+...++++|.+|+++ |++.+++++...++|..+
T Consensus 125 --------------------~~~~~~~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~------r~~~~~~~~~~~~~G~~~ 178 (481)
T TIGR00879 125 --------------------LSVEMLIVGRVLLGIGVGIASALVPMYLSEIAPKAL------RGALTSLYQLAITFGILV 178 (481)
T ss_pred --------------------cchHHHHHHHHHHHhhhhHHHhHHHHHHHccCChhh------hhhhhhHHHHHHHHHHHH
Confidence 345688999999999999999999999999999999 999999999999999999
Q ss_pred HHHHH---HHhhhccchHHHHHHHHHHHHHHHHH
Q 007580 245 AFTLV---VYIQMEHGWGSAFGALAIAMGISNML 275 (597)
Q Consensus 245 ~p~i~---~~i~~~~gw~~~f~i~~~~~~~~~~~ 275 (597)
++.++ +.+.+..+||+.|++.++..++..+.
T Consensus 179 ~~~~~~~~~~~~~~~~w~~~f~~~~~~~~~~~~~ 212 (481)
T TIGR00879 179 AYGFGSGKVSLNNTLGWRIPLGLQLIPAGLLFLG 212 (481)
T ss_pred HHHHHHHhhcCCCCccHHHHHHHHHHHHHHHHHH
Confidence 99999 66667789999999866554444333
No 38
>TIGR00891 2A0112 putative sialic acid transporter.
Probab=99.90 E-value=4.7e-21 Score=203.84 Aligned_cols=174 Identities=13% Similarity=0.189 Sum_probs=152.5
Q ss_pred ccCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHhhhhHHHhhcccchHHHHHHH
Q 007580 63 SKTGGWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIF 142 (597)
Q Consensus 63 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~lsD~~~GR~~~~~~~ 142 (597)
..+++|+.+..+.+..++..+..+.+... .+.+.+++|++..+.+++.+.+.++..++.++.|+++|| +|||+++.++
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~~~~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~Dr-~g~r~~~~~~ 83 (405)
T TIGR00891 6 LTRAQWNAFSAAWLGWLLDAFDFFLVALV-LAEVAGEFGLTTVDAASLISAALISRWFGALMFGLWGDR-YGRRLPMVTS 83 (405)
T ss_pred CCcccHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHhCCChhhHHHHHHHHHHHHHHHHHHHHHHHHH-hccHHHHHHH
Confidence 34578888888888889998887666555 456788999999999999999999999999999999999 8999999999
Q ss_pred HHHHHHHHHHHHHhhhccccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhhchhhhhhhhhhccCCCCCch
Q 007580 143 TTIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKD 222 (597)
Q Consensus 143 ~~l~~~g~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~ 222 (597)
.++..++.++++++ .++..+++.|++.|++.+...+...+++.|.+|+++
T Consensus 84 ~~~~~~~~~~~~~~----------------------------~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~-- 133 (405)
T TIGR00891 84 IVLFSAGTLACGFA----------------------------PGYITMFIARLVIGIGMGGEYGSSAAYVIESWPKHL-- 133 (405)
T ss_pred HHHHHHHHHHHHHh----------------------------ccHHHHHHHHHHHHhhhhhhhHHHHHHHHHhCChhh--
Confidence 99999888888775 467788999999999999999999999999999998
Q ss_pred hhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhccc--hHHHHHHHHHHHHHH
Q 007580 223 YKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHG--WGSAFGALAIAMGIS 272 (597)
Q Consensus 223 ~~~~R~~~~~~~~~~~~lg~~l~p~i~~~i~~~~g--w~~~f~i~~~~~~~~ 272 (597)
|++..++++....+|..+++.+++.+.+..+ ||+.|++.++..++.
T Consensus 134 ----~~~~~~~~~~~~~~g~~~~~~l~~~l~~~~~~~w~~~f~~~~~~~~~~ 181 (405)
T TIGR00891 134 ----RNKASGLLISGYAVGAVVAAQVYSLVVPVWGDGWRALFFISILPIIFA 181 (405)
T ss_pred ----hhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999887766 999998765544433
No 39
>TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily. This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033.
Probab=99.90 E-value=2.9e-20 Score=196.56 Aligned_cols=179 Identities=18% Similarity=0.166 Sum_probs=150.7
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHhhhhHHHhhcccchHHHHHHHHHHH
Q 007580 67 GWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIY 146 (597)
Q Consensus 67 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~lsD~~~GR~~~~~~~~~l~ 146 (597)
+++.++.+.+..++..++.....+.+ +++.+++|.+..+.+++.+.+.++..++.++.|+++|| +|||+++.++.++.
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~-p~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~d~-~g~r~~~~~~~~~~ 80 (385)
T TIGR00710 3 AKAFALLLGCLSILGPLGIDMYLPAF-PEIAADLSTPASIVQMTLTLYLLGFAAGQLLWGPLSDR-YGRRPVLLLGLFIF 80 (385)
T ss_pred chHHHHHHHHHHHHHHHHHHHhcccH-HHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhhhHHHh-cCChHHHHHHHHHH
Confidence 34445555555566666655555544 56778999999999999999999999999999999999 89999999999999
Q ss_pred HHHHHHHHHhhhccccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhhchhhhhhhhhhccCCCCCchhhhh
Q 007580 147 LAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTH 226 (597)
Q Consensus 147 ~~g~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~ 226 (597)
.++.+++..+ ++...+++.|++.|++.+...+...+++.|.+|+++
T Consensus 81 ~~~~~~~~~~----------------------------~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~------ 126 (385)
T TIGR00710 81 ALSSLGLALS----------------------------NNIETLLVLRFVQAFGASAGSVISQALVRDIYPGEE------ 126 (385)
T ss_pred HHHHHHHHHH----------------------------ccHHHHHHHHHHHHcchhHHHHHHHHHHHHhcCcHH------
Confidence 9888888775 467788999999999999999999999999999888
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHhcC
Q 007580 227 LDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGTP 281 (597)
Q Consensus 227 R~~~~~~~~~~~~lg~~l~p~i~~~i~~~~gw~~~f~i~~~~~~~~~~~~~~~~~ 281 (597)
|++.+++++....+|..++|.+++++.+..+|++.|++.++..++..++.+...+
T Consensus 127 ~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 181 (385)
T TIGR00710 127 LSRIYSILMPVLALAPAVAPLLGGYILVWLSWHAIFAFLSLAGILLSALIFFILP 181 (385)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 9999999999999999999999999999899999999887766655555444443
No 40
>PRK03699 putative transporter; Provisional
Probab=99.90 E-value=1.9e-20 Score=199.53 Aligned_cols=174 Identities=7% Similarity=0.058 Sum_probs=147.8
Q ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHhhhhHHHhhcccchHHHHHHHHHH
Q 007580 66 GGWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTI 145 (597)
Q Consensus 66 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~lsD~~~GR~~~~~~~~~l 145 (597)
+|||..+...+..++.....+.+...+ +.+.+++|+|.++.+++.+.+.++..++.+++|+++|| +|||+++.++.++
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~g~~~-~~i~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr-~g~r~~~~~~~~~ 81 (394)
T PRK03699 4 NRIKLTWISFLSYALTGALVIVTGMVM-GPIAEYFNLPVSSMSNTFTFLNAGILISIFLNAWLMEI-IPLKRQLIFGFAL 81 (394)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHhhhh-HHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hhHHHHHHHHHHH
Confidence 466778887777777777766665555 45678899999999999999999999999999999999 8999999999999
Q ss_pred HHHHHHHHHHhhhccccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhhchhhhhhhhhhccCCCCCchhhh
Q 007580 146 YLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKT 225 (597)
Q Consensus 146 ~~~g~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~ 225 (597)
..++.+++.++ ++...+++.|+++|++.+...+...+.+.|.+|+++
T Consensus 82 ~~i~~~l~~~~----------------------------~~~~~~~~~~~l~G~~~g~~~~~~~~~i~~~~~~~~----- 128 (394)
T PRK03699 82 MILAVAGLMFS----------------------------HSLALFSIAMFVLGVVSGITMSIGTFLITHVYEGKQ----- 128 (394)
T ss_pred HHHHHHHHHHc----------------------------chHHHHHHHHHHHHHhhHhhccchhHHhhhhcccch-----
Confidence 99888888876 467788999999999999999999999999999888
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHhhh-ccchHHHHHHHHHHHHHHHHH
Q 007580 226 HLDRFFNFFYLSVTVGAIVAFTLVVYIQM-EHGWGSAFGALAIAMGISNML 275 (597)
Q Consensus 226 ~R~~~~~~~~~~~~lg~~l~p~i~~~i~~-~~gw~~~f~i~~~~~~~~~~~ 275 (597)
|+..++..+....+|+.++|.+.+++.. ..|||+.|.+.++..++..++
T Consensus 129 -r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~gw~~~f~~~~~~~~~~~~~ 178 (394)
T PRK03699 129 -RGSRLLFTDSFFSMAGMIFPIIAAYLLARSIEWYWVYACIGLVYVAIFIL 178 (394)
T ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHH
Confidence 9999998888889999999999988764 579999999877665544433
No 41
>PRK10406 alpha-ketoglutarate transporter; Provisional
Probab=99.90 E-value=2.6e-20 Score=200.96 Aligned_cols=177 Identities=16% Similarity=0.208 Sum_probs=132.4
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC---CChHHHHHHHHHH---HHHHHHHhhhhHHHhhcccchHHHHH
Q 007580 67 GWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMH---KSFADSSNAVNNF---LGISQASSVLGGFLADAYLGRYWTIA 140 (597)
Q Consensus 67 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~---~s~~~a~~~~~~~---~~~~~~~~~~~G~lsD~~~GR~~~~~ 140 (597)
+++.+....+..+++.+.+.. .+.+.+++.++++ .+..+.+...+.+ .++..++.+++|+++|| +|||+++.
T Consensus 20 ~~~~~~~~~~~~~~~~~d~~~-~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~G~l~Dr-~Grr~~l~ 97 (432)
T PRK10406 20 RIWAIVGASSGNLVEWFDFYV-YSFCSLYFAHIFFPSGNTTTQLLQTAGVFAAGFLMRPIGGWLFGRIADK-HGRKKSML 97 (432)
T ss_pred HHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCcHHHHH
Confidence 444455555667777777555 5666778888885 4555433333444 44445899999999999 89999999
Q ss_pred HHHHHHHHHHHHHHHhhhccccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhhchhhhhhhhhhccCCCCC
Q 007580 141 IFTTIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERS 220 (597)
Q Consensus 141 ~~~~l~~~g~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~ 220 (597)
++.+++.++.++++++..+.... ......+++.|+++|+|.|+..+...++++|++|+++
T Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~--------------------~~~~~~l~~~R~l~G~g~g~~~~~~~~~i~e~~p~~~ 157 (432)
T PRK10406 98 ISVCMMCFGSLVIACLPGYETIG--------------------TWAPALLLLARLFQGLSVGGEYGTSATYMSEVAVEGR 157 (432)
T ss_pred HHHHHHHHHHHHHhhcCCchhHH--------------------HHHHHHHHHHHHHHHhhhhhhHhhHHHHHHHhCCCCc
Confidence 99999999999988762210000 0123568899999999999999999999999999998
Q ss_pred chhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhh--------hccchHHHHHHHHHHHHH
Q 007580 221 KDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQ--------MEHGWGSAFGALAIAMGI 271 (597)
Q Consensus 221 ~~~~~~R~~~~~~~~~~~~lg~~l~p~i~~~i~--------~~~gw~~~f~i~~~~~~~ 271 (597)
|+...++.+.+.+.|..+++.+...+. ..+|||+.|++.++..++
T Consensus 158 ------rg~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~gWr~~F~i~~~~~ll 210 (432)
T PRK10406 158 ------KGFYASFQYVTLIGGQLLALLVVVVLQQTLEDAELREWGWRIPFALGAVLAVV 210 (432)
T ss_pred ------ccHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHhccchHHHHHHHHHHHHH
Confidence 999999988888888888887765543 257999999986665443
No 42
>TIGR00890 2A0111 Oxalate/Formate Antiporter.
Probab=99.90 E-value=5e-21 Score=201.14 Aligned_cols=174 Identities=13% Similarity=0.036 Sum_probs=142.2
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHhhhhHHHhhcccchHHHHHHHHHHHH
Q 007580 68 WIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYL 147 (597)
Q Consensus 68 ~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~lsD~~~GR~~~~~~~~~l~~ 147 (597)
|+.+....+..+.... .|.. +.+.+++.+++|++..+.+++.+.+.++..++.++.|+++|| +|||+++.++.++..
T Consensus 3 ~~~~~~~~~~~~~~~~-~~~~-~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~d~-~G~r~~~~~~~~~~~ 79 (377)
T TIGR00890 3 WYVLVGTVIMCFTSGY-VYTW-TLLAPPLGRYFGVGVTAVAIWFTLLLIGLAMSMPVGGLLADK-FGPRAVAMLGGILYG 79 (377)
T ss_pred EEEeHHHHHHHHHhhH-Hhhh-hhHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHhhhhHHHHHH-cCccchhHHhHHHHH
Confidence 4444444444443333 3444 445678889999999999999999999999999999999999 899999999999999
Q ss_pred HHHHHHHHhhhccccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhhchhhhhhhhhhccCCCCCchhhhhh
Q 007580 148 AGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHL 227 (597)
Q Consensus 148 ~g~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~R 227 (597)
++.++++++ ++...++++|++.|++.+...+.....+.+++| ++ |
T Consensus 80 ~~~~~~~~~----------------------------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~-~~------~ 124 (377)
T TIGR00890 80 LGFTFYAIA----------------------------DSLAALYLTYGLASAGVGIAYGIALNTAVKWFP-DK------R 124 (377)
T ss_pred HHHHHHHHH----------------------------HHHHHHHHHHHHHhHHHHHHHHhHHHHHHHHcC-cc------c
Confidence 999888887 577889999999999999888888888888886 45 8
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHh
Q 007580 228 DRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIG 279 (597)
Q Consensus 228 ~~~~~~~~~~~~lg~~l~p~i~~~i~~~~gw~~~f~i~~~~~~~~~~~~~~~ 279 (597)
++..+++..+.++|..+++.+.+.+.+..|||+.|++.++..++..+..+..
T Consensus 125 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~ 176 (377)
T TIGR00890 125 GLASGIIIGGYGLGSFILSPLITSVINLEGVPAAFIYMGIIFLLVIVLGAFL 176 (377)
T ss_pred HHHHHHHHHhcchhHhHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999998877777777777899999998887766655444433
No 43
>PRK12307 putative sialic acid transporter; Provisional
Probab=99.89 E-value=1.3e-20 Score=202.57 Aligned_cols=166 Identities=16% Similarity=0.181 Sum_probs=146.5
Q ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHhhhhHHHhhcccchHHHHHHHHHH
Q 007580 66 GGWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTI 145 (597)
Q Consensus 66 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~lsD~~~GR~~~~~~~~~l 145 (597)
.+|+.+....+..+...+..+.. .++.+++.+++|+++.+.++..+.+.++..++.++.|+++|| +|||+++.++.++
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~~s~~~~~~~~~~~~~~~~l~~~~~g~l~dr-~g~r~~l~~~~~~ 92 (426)
T PRK12307 15 PQKNALFSAWLGYVFDGFDFMLI-FYIMYLIKADLGLTDMEGAFLATAAFIGRPFGGALFGLLADK-FGRKPLMMWSIVA 92 (426)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHH-HHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCChHHHHHHHHH
Confidence 45556666677777777775554 445567889999999999999999999999999999999999 8999999999999
Q ss_pred HHHHHHHHHHhhhccccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhhchhhhhhhhhhccCCCCCchhhh
Q 007580 146 YLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKT 225 (597)
Q Consensus 146 ~~~g~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~ 225 (597)
..++..+++++ .+...++++|++.|++.+...+....++.|.+|+++
T Consensus 93 ~~~~~~~~~~~----------------------------~~~~~l~~~r~l~G~g~g~~~~~~~~~~~~~~~~~~----- 139 (426)
T PRK12307 93 YSVGTGLSGLA----------------------------SGVIMLTLSRFIVGMGMAGEYACASTYAVESWPKHL----- 139 (426)
T ss_pred HHHHHHHHHHH----------------------------hHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhCCHhH-----
Confidence 99999888876 567889999999999999999999999999999998
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHhhhccchHHHHHHHHH
Q 007580 226 HLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAI 267 (597)
Q Consensus 226 ~R~~~~~~~~~~~~lg~~l~p~i~~~i~~~~gw~~~f~i~~~ 267 (597)
|+++.+++..+..+|..+++.+.+++.+..|||+.|++.++
T Consensus 140 -r~~~~~~~~~~~~lg~~~~~~l~~~l~~~~~w~~~f~i~~~ 180 (426)
T PRK12307 140 -KSKASAFLVSGFGIGNIIAAYFMPSFAEAYGWRAAFFVGLL 180 (426)
T ss_pred -hhHhhhHHHHHHhHHHHHHHHHHHHHcccCCHHHHHHHHHH
Confidence 99999999999999999999999999888999999987544
No 44
>PRK03633 putative MFS family transporter protein; Provisional
Probab=99.89 E-value=2.7e-20 Score=197.43 Aligned_cols=155 Identities=15% Similarity=0.170 Sum_probs=138.1
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHhhhhHHHhhcccchHHHHHHHHHHHH
Q 007580 68 WIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYL 147 (597)
Q Consensus 68 ~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~lsD~~~GR~~~~~~~~~l~~ 147 (597)
.+.++.+++..++..++...+.+.++.|+. ++|.|..+++++.+.+.++..+++++.|+++|| +|||+++.++.++..
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~lp~~~~-~~~~s~~~~G~~~s~~~l~~~~~~~~~g~l~dr-~g~k~~~~~~~~~~~ 82 (381)
T PRK03633 5 TRPVLLLLCGLLLLTLAIAVLNTLVPLWLA-QEHLPTWQVGVVSSSYFTGNLVGTLLAGYVIKR-IGFNRSYYLASLIFA 82 (381)
T ss_pred HHHHHHHHHHHHHHHHhhhhHHHHHHHHHH-HcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHH-HHHHHHHHHHHHHHH
Confidence 346888888889999998888888887776 689999999999999999999999999999999 899999999999999
Q ss_pred HHHHHHHHhhhccccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhhchhhhhhhhhhccCCCCCchhhhhh
Q 007580 148 AGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHL 227 (597)
Q Consensus 148 ~g~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~R 227 (597)
++...++++ ++...++++|+++|++.+...+...+.+.|..++++ |
T Consensus 83 ~~~~~~~~~----------------------------~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~------~ 128 (381)
T PRK03633 83 AGCAGLGLM----------------------------VGFWSWLAWRFVAGIGCAMIWVVVESALMCSGTSRN------R 128 (381)
T ss_pred HHHHHHHHh----------------------------ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHH------H
Confidence 998888876 567889999999999999998888888889888887 9
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhhhccch
Q 007580 228 DRFFNFFYLSVTVGAIVAFTLVVYIQMEHGW 258 (597)
Q Consensus 228 ~~~~~~~~~~~~lg~~l~p~i~~~i~~~~gw 258 (597)
++.++++....++|..+||.+++++.+...|
T Consensus 129 ~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~ 159 (381)
T PRK03633 129 GRLLAAYMMVYYLGTVLGQLLVSKVSTELMS 159 (381)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcccccccc
Confidence 9999999999999999999999998775433
No 45
>cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters. MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3
Probab=99.89 E-value=1.4e-20 Score=195.45 Aligned_cols=345 Identities=18% Similarity=0.205 Sum_probs=238.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHhhhhHHHhhcccchHHHHHHHHHHHHHHHHH
Q 007580 73 FIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTG 152 (597)
Q Consensus 73 ~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~lsD~~~GR~~~~~~~~~l~~~g~~~ 152 (597)
.+.+..++..+..+...+.++.|. +++|.+..+.++..+.+.++..++.++.|+++|| +|||+.+.++.++..++.++
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~d~-~g~r~~~~~~~~~~~~~~~~ 80 (352)
T cd06174 3 LLFLGFFLSGLDRGLLSPALPLLA-EDLGLSASQAGLIVSAFSLGYALGSLLAGYLSDR-FGRRRVLLLGLLLFALGSLL 80 (352)
T ss_pred HHHHHHHHHHHhhhhhHhhHHHHH-HHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHH-hCCchhhHHHHHHHHHHHHH
Confidence 455666777788777777776665 5679999999999999999999999999999999 89999999999999999988
Q ss_pred HHHhhhccccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhhchhhhhhhhhhccCCCCCchhhhhhhhHHH
Q 007580 153 ITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFN 232 (597)
Q Consensus 153 ~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~R~~~~~ 232 (597)
+... ++...+++.|++.|++.+...+...+++.|.+|+++ |++.++
T Consensus 81 ~~~~----------------------------~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~------~~~~~~ 126 (352)
T cd06174 81 LAFA----------------------------SSLWLLLVGRFLLGLGGGALYPAAAALIAEWFPPKE------RGRALG 126 (352)
T ss_pred HHHh----------------------------ccHHHHHHHHHHHHcccccccHhHHHHHHHhCCccc------hhhhhh
Confidence 8876 467889999999999999999999999999999988 999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHhcCcccccCCCCCchhhHHHHHHHH-HHhhhccc
Q 007580 233 FFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGTPLYRHRLPGGSPLTRVAQVLVAA-FRKRHAAF 311 (597)
Q Consensus 233 ~~~~~~~lg~~l~p~i~~~i~~~~gw~~~f~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 311 (597)
+.+...++|..++|.+++++.+..+|++.|++.++..++..++..... +......... ...-...
T Consensus 127 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~- 192 (352)
T cd06174 127 LFSAGFGLGALLGPLLGGLLAESLGWRWLFLILAILGLLLALLLLFLL-------------RLLLLLALAFFLLSFGYY- 192 (352)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH-------------HHHHHHHHHHHHHHhHHH-
Confidence 999999999999999999999988999999988877666555443322 1111110000 0000000
Q ss_pred CccccccccccCCCcccccCCcccccCCcchhhHHHhhhhhcccCCCCCCccccchhhhhhhHhHhhhhhHHHHHHHHHH
Q 007580 312 SSSELIGLYEVPGKHSAIKGSGKIAHTDDFRCLDKAALELKEDVINPSPWKLCTVTQVEEVKTLVRLVPIPACTIMLNVI 391 (597)
Q Consensus 312 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 391 (597)
.+ ..+... .. ... ..+ ...+. .... ....+...+....
T Consensus 193 -------~~--------------------~~~~~~--~~-~~~----~~~------~~~~~-~~~~-~~~~~~~~i~~~~ 230 (352)
T cd06174 193 -------GL--------------------LTYLPL--YL-QEV----LGL------SAAEA-GLLL-SLFGLGGILGALL 230 (352)
T ss_pred -------HH--------------------HHHHHH--HH-HHh----cCC------CHHHH-HHHH-HHHHHHHHHHHHH
Confidence 00 000000 00 000 000 00011 0000 0000011000000
Q ss_pred HhcchhhHHHHHhhhcccCCCCCCCChhH-HHHHHHHHHHHHHHHHHHHHHHHhHHhhhcCccccccCcCccchHHHHHH
Q 007580 392 LTEFLTLSVQQAYTMNTHMGHPRGASQLQ-RVGIGLAVSILSVIWAGIFERYRRNYAISHGYEFSFLTAMPDLSAYWLLI 470 (597)
Q Consensus 392 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~i~~G~~l~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~s~~~l~~ 470 (597)
.. ...| +.+.+. .+..+.++..++.+..... .+...+..
T Consensus 231 ----~~------~~~~-------~~~~~~~~~~~~~~~~~i~~~~~~~~-----------------------~~~~~~~~ 270 (352)
T cd06174 231 ----GG------LLSD-------RLGRRRLLLLIGLLLAALGLLLLALA-----------------------PSLALLLV 270 (352)
T ss_pred ----HH------HHHH-------HHHhhhHHHHHHHHHHHHHHHHHHHh-----------------------ccHHHHHH
Confidence 00 0111 111222 4556666666666655543 23556677
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCCCCCccccCCCCcchhH
Q 007580 471 QYCLIGIAEVFCIVGLLEFLYEEAPDAMKSIGSAYAALAGGLGCFAASILNSIIKSVTGNPKKGQPNWLAQNINTGRFDY 550 (597)
Q Consensus 471 ~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~gl~~~~~~lg~~lg~~l~~~v~~~~g~~~~~~~~w~~~~l~~~~~~~ 550 (597)
..++.+++.....+...+++.+..|++.|++++|+.+....+|..+++.+.+.+.+..+ +..
T Consensus 271 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~g~l~~~~~------------------~~~ 332 (352)
T cd06174 271 ALLLLGFGLGFAFPALLTLASELAPPEARGTASGLFNTFGSLGGALGPLLAGLLLDTGG------------------YGG 332 (352)
T ss_pred HHHHHHHHHhccchhHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccC------------------cch
Confidence 78889999999999999999999999999999999999999999999999998765332 256
Q ss_pred HHHHHHHHHHHHHHHHH
Q 007580 551 LYWLLAVLSVINFCAFL 567 (597)
Q Consensus 551 ~f~~~a~l~~l~~~~~~ 567 (597)
.|++.+++.+++.++++
T Consensus 333 ~~~~~~~~~~i~~i~~~ 349 (352)
T cd06174 333 VFLILAALALLAALLLL 349 (352)
T ss_pred HHHHHHHHHHHHHHHhe
Confidence 67888888877766654
No 46
>PRK09952 shikimate transporter; Provisional
Probab=99.89 E-value=1.1e-19 Score=196.48 Aligned_cols=178 Identities=16% Similarity=0.163 Sum_probs=133.1
Q ss_pred cCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--CCChHHHHHHH-----HHHHHHHHHHhhhhHHHhhcccchH
Q 007580 64 KTGGWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVM--HKSFADSSNAV-----NNFLGISQASSVLGGFLADAYLGRY 136 (597)
Q Consensus 64 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~--~~s~~~a~~~~-----~~~~~~~~~~~~~~G~lsD~~~GR~ 136 (597)
..++|+.+....+..+++......+....+.++.+++ +.++.. ++.. +...++..++.++.|+++|| +|||
T Consensus 17 ~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~g~~~~G~l~Dr-~Grr 94 (438)
T PRK09952 17 LSRARRAALGSFAGAVVDWYDFLLYGITAALVFNREFFPQVSPAM-GTLAAFATFGVGFLFRPLGGVVFGHFGDR-LGRK 94 (438)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcHH-HHHHHHHHHHHHHHHHhhHHHHHHHHHHh-hccH
Confidence 3445667777777778887776655555555666665 676653 4332 22334566778889999999 8999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhccccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhhchhhhhhhhhhccC
Q 007580 137 WTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQF 216 (597)
Q Consensus 137 ~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~~ 216 (597)
+++.++.+++.++.++++++.+..... -.....+++.|+++|++.|+..+....++.|++
T Consensus 95 ~~l~~~~~~~~~~~~~~~~~~~~~~~~--------------------~~~~~~l~~~R~l~G~~~g~~~~~~~~~~~e~~ 154 (438)
T PRK09952 95 RMLMLTVWMMGIATALIGLLPSFSTIG--------------------WWAPVLLVTLRAIQGFAVGGEWGGAALLAVESA 154 (438)
T ss_pred HHHHHHHHHHHHHHHHHhcCCcHHHHH--------------------HHHHHHHHHHHHHHHhhhcccHHHHHHHHHHhC
Confidence 999999999999999998872210000 001225888999999999999999999999999
Q ss_pred CCCCchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhh--------hccchHHHHHHHHHHH
Q 007580 217 DERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQ--------MEHGWGSAFGALAIAM 269 (597)
Q Consensus 217 ~~~~~~~~~~R~~~~~~~~~~~~lg~~l~p~i~~~i~--------~~~gw~~~f~i~~~~~ 269 (597)
|+++ |+...+....+..+|..++..+..++. +.+|||+.|++.++..
T Consensus 155 p~~~------rg~~~~~~~~g~~~G~~l~~~~~~~l~~~~~~~~~~~~gWr~~f~~~~~~~ 209 (438)
T PRK09952 155 PKNK------KAFYSSGVQVGYGVGLLLSTGLVSLISMMTTDEQFLSWGWRIPFLFSIVLV 209 (438)
T ss_pred CCCC------CcHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHhhccChHHHHHHHHHHH
Confidence 9998 999999988888999988887776654 2579999999876654
No 47
>PRK09556 uhpT sugar phosphate antiporter; Reviewed
Probab=99.89 E-value=3.2e-21 Score=210.14 Aligned_cols=182 Identities=14% Similarity=0.045 Sum_probs=141.7
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHhhhhHHHhhcccchHHHHHHHHHHH
Q 007580 67 GWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIY 146 (597)
Q Consensus 67 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~lsD~~~GR~~~~~~~~~l~ 146 (597)
.|+.+...++..++..+....+... .+.+.+++|++..+.+++.+.+.+++.++.+++|+++|| +|||+++.++.++.
T Consensus 27 ~~~i~~~~~~~~~~~y~~r~~~~~~-~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr-~g~r~~l~~~~~~~ 104 (467)
T PRK09556 27 FMQSYLVVFIGYLTMYLIRKNFKAA-QNDMISTYGLSTTELGMIGLGFSITYGVGKTLVGYYADG-KNTKQFLPFLLILS 104 (467)
T ss_pred HHHHHHHHHHHHHHHHHHhcChhhh-hHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhhhHhhc-cCccchHHHHHHHH
Confidence 3334444444444444444444433 456788999999999999999999999999999999999 89999999988887
Q ss_pred HHHHHHHHHhhhccccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhhchhhhhhhhhhccCCCCCchhhhh
Q 007580 147 LAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTH 226 (597)
Q Consensus 147 ~~g~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~ 226 (597)
.++...++...... ..+...+++.|+++|++.+...|....+++|++|+++
T Consensus 105 ~~~~~~~~~~~~~~-----------------------~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~------ 155 (467)
T PRK09556 105 AICMLGFGASLGSG-----------------------SVSLGLMIALWALSGFFQSTGGPCSYSTITRWTPRRK------ 155 (467)
T ss_pred HHHHHHHHHHHhcc-----------------------cchHHHHHHHHHHHHHHHhccchHHHHHHHHHcCccc------
Confidence 77776666531100 0467899999999999999999999999999999999
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHhhhcc---chHHHHHHHHHHHHHHHHHHHHh
Q 007580 227 LDRFFNFFYLSVTVGAIVAFTLVVYIQMEH---GWGSAFGALAIAMGISNMLFFIG 279 (597)
Q Consensus 227 R~~~~~~~~~~~~lg~~l~p~i~~~i~~~~---gw~~~f~i~~~~~~~~~~~~~~~ 279 (597)
|+++++++..+.++|+.+++.+..++.... +|+..|.+.++..++..++.++.
T Consensus 156 rg~a~gi~~~~~~lG~~l~~~i~~~~~~~~~~~~~~~~f~~~g~~~~~~~i~~~~~ 211 (467)
T PRK09556 156 RGRFLGFWNISHNLGGAGAGGVALWGANYFFDGHVIGMFIFPSIIALIIGFIGLRY 211 (467)
T ss_pred eeeeEEeeecccchhhhHHHHHHHHHHHhhccCcchhHHHHHHHHHHHHHHHHHHh
Confidence 999999999999999999999988776643 59988887776655444444433
No 48
>TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter.
Probab=99.89 E-value=6e-21 Score=207.90 Aligned_cols=149 Identities=14% Similarity=0.131 Sum_probs=130.9
Q ss_pred hhCCChHHHHHHHHHHHHHHHHHhhhhHHHhhcccchHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCcccccccccCC
Q 007580 99 VMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGS 178 (597)
Q Consensus 99 ~~~~s~~~a~~~~~~~~~~~~~~~~~~G~lsD~~~GR~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~c~~~~~~~~~ 178 (597)
+++++..+.+++.+.+.+++.++.+++|+++|| +|||+++.++.++..++.+++..+..
T Consensus 70 ~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr-~g~r~~l~~~~~~~~~~~~~~~~~~~-------------------- 128 (465)
T TIGR00894 70 NFKWSGALQGLILSSHFYGQIIIQIPVGYLAGK-YVFKWSIGIGMFLSSVISIVIPWAAG-------------------- 128 (465)
T ss_pred CCCCCHHHhhHHHHHHHHHHHHHHcchHHHHHH-hCcchhhHHHHHHHHHHHHHHHHHHH--------------------
Confidence 688999999999999999999999999999999 89999999999988888777655421
Q ss_pred CCCccchhHHHHHHHHHHHHHhhhchhhhhhhhhhccCCCCCchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhcc-c
Q 007580 179 CEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEH-G 257 (597)
Q Consensus 179 ~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~R~~~~~~~~~~~~lg~~l~p~i~~~i~~~~-g 257 (597)
.+...+++.|+++|++.+...+....+++|++|+++ |++++++++.+.++|..++|.+++++.+.. |
T Consensus 129 ------~~~~~l~~~r~~~G~~~~~~~~~~~~~~~~~~~~~~------r~~~~~~~~~~~~~g~~i~~~l~~~l~~~~~g 196 (465)
T TIGR00894 129 ------GGIALVVFCRVIQGLAQGSVSPATHKIIVKWAPPKE------RSRLLGMSTSGFQLGTFIFLPISGWLCESWGG 196 (465)
T ss_pred ------cCchHHHHHHHHHHHhcccchhhHHHHHHhcCCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHhccCC
Confidence 245678999999999999999999999999999999 999999999999999999999999999884 9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhc
Q 007580 258 WGSAFGALAIAMGISNMLFFIGT 280 (597)
Q Consensus 258 w~~~f~i~~~~~~~~~~~~~~~~ 280 (597)
||+.|++.++..++..++++...
T Consensus 197 w~~~f~i~~~~~~~~~~~~~~~~ 219 (465)
T TIGR00894 197 WPMIFYVFGIVGCAWSLLWFVFP 219 (465)
T ss_pred CCeehhhhhHHHHHHHHHHHHHh
Confidence 99999998877665555444433
No 49
>PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional
Probab=99.89 E-value=5.7e-20 Score=199.50 Aligned_cols=159 Identities=11% Similarity=0.057 Sum_probs=127.9
Q ss_pred HHHHHHHHhhCCChHHHHHHHHHHHHHHHHHhhhhHHHhhcccchHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCccc
Q 007580 91 NMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCD 170 (597)
Q Consensus 91 ~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~lsD~~~GR~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~c~ 170 (597)
...+|+.++ |++..+.+++.+.+.++..++.+++|+++|| +|||++++++.++..++.+.++++...
T Consensus 50 ~~~p~l~~~-g~s~~~~g~~~~~~~i~~~~~~~~~G~l~Dr-~g~k~~l~~~~~~~~i~~~~~~~~~~~----------- 116 (452)
T PRK11273 50 LAMPYLVEQ-GFSRGDLGFALSGISIAYGFSKFIMGSVSDR-SNPRVFLPAGLILAAAVMLFMGFVPWA----------- 116 (452)
T ss_pred HhhHHHHHc-CCCHHHHHHHHHHHHHHHHHHHhhhhhhhhc-cCCchhHHHHHHHHHHHHHHHHhhhcc-----------
Confidence 345678877 9999999999999999999999999999999 899999999999999888877765210
Q ss_pred ccccccCCCCCccchhHHHHHHHHHHHHHhhhchhhhhhhhhhccCCCCCchhhhhhhhHHHHHHHHHHHHHH-HHHHHH
Q 007580 171 RISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAI-VAFTLV 249 (597)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~R~~~~~~~~~~~~lg~~-l~p~i~ 249 (597)
..+...+++.|++.|++.+...+.....+.|++|+++ |++++++++.+.++|+. .+|+++
T Consensus 117 -------------~~~~~~~~~~~~l~gi~~g~~~~~~~~~~~~~~~~~~------r~~~~~~~~~~~~~g~~~~~~l~~ 177 (452)
T PRK11273 117 -------------TSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKE------RGGIVSVWNCAHNVGGGLPPLLFL 177 (452)
T ss_pred -------------cccHHHHHHHHHHHHHHHhccchHHHHHHHHhCChHH------HHHHHHHHHHHHHhhhhHHHHHHH
Confidence 0256678889999999999988888889999999998 99999999999999875 455544
Q ss_pred HHhhhccchHHHHHHHHHHHHHHHHHHHHhcC
Q 007580 250 VYIQMEHGWGSAFGALAIAMGISNMLFFIGTP 281 (597)
Q Consensus 250 ~~i~~~~gw~~~f~i~~~~~~~~~~~~~~~~~ 281 (597)
..+....+||+.|++.+++.++..++.++..+
T Consensus 178 ~~~~~~~gw~~~f~i~~~~~~~~~~l~~~~~~ 209 (452)
T PRK11273 178 LGMAWFNDWHAALYMPAFAAILVALFAFAMMR 209 (452)
T ss_pred HHHHHhccHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 44444459999999887766555444444333
No 50
>PRK15011 sugar efflux transporter B; Provisional
Probab=99.89 E-value=8.5e-20 Score=194.48 Aligned_cols=178 Identities=12% Similarity=0.061 Sum_probs=132.0
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHH-HHHHHHHhhhhHHHhhcccchHHHHH-HHHHH
Q 007580 68 WIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNF-LGISQASSVLGGFLADAYLGRYWTIA-IFTTI 145 (597)
Q Consensus 68 ~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~-~~~~~~~~~~~G~lsD~~~GR~~~~~-~~~~l 145 (597)
....+..++..++..++...+.+.++.|+.+++|.+.++.++.++.+ ..+..++++++|+ +|| +||||.++ .+.++
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~~~~~~s~~~~g~~~~~~~~~~~~~~~~~~~~-~dr-~g~r~~~~~~~~~~ 91 (393)
T PRK15011 14 DLTSTAFLIVAFLTGIAGALQTPTLSIFLTDEVHARPAMVGFFFTGSAVIGILVSQFLAGR-SDK-RGDRKSLIVFCCLL 91 (393)
T ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHH-Hhc-ccchhHHHHHHHHH
Confidence 33566777778899999888899999999999999999999987765 4466666766777 999 79998754 45555
Q ss_pred HHHHHHHHHHhhhccccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhhchhhhhhhhhhccCCCCCchhhh
Q 007580 146 YLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKT 225 (597)
Q Consensus 146 ~~~g~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~ 225 (597)
..++..+++++ .+...+++.+.+.+...+...|....+..|..++++
T Consensus 92 ~~~~~~~~~~~----------------------------~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----- 138 (393)
T PRK15011 92 GVLACTLFAWN----------------------------RNYFVLLFVGVFLSSFGSTANPQMFALAREHADKTG----- 138 (393)
T ss_pred HHHHHHHHHHh----------------------------hHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhcc-----
Confidence 55666555554 345555555444444445677888888888776655
Q ss_pred hh--hhHHHHHHHHHHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHhcC
Q 007580 226 HL--DRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGTP 281 (597)
Q Consensus 226 ~R--~~~~~~~~~~~~lg~~l~p~i~~~i~~~~gw~~~f~i~~~~~~~~~~~~~~~~~ 281 (597)
| +...++.+.+.++|..++|.+++++.++.|||+.|++.++..++..++++...|
T Consensus 139 -~~~~~~~~~~~~~~~lg~~~g~~i~~~l~~~~gw~~~f~~~~~~~~~~~~~~~~~~~ 195 (393)
T PRK15011 139 -REAVMFSSFLRAQVSLAWVIGPPLAYALAMGFSFTVMYLSAAVAFIVCGVMVWLFLP 195 (393)
T ss_pred -chHHHHHHHHHHHHHHHHHHhhHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHhhcC
Confidence 4 344578888999999999999999999999999999887766555554444444
No 51
>KOG0569 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]
Probab=99.89 E-value=2.5e-21 Score=205.58 Aligned_cols=379 Identities=15% Similarity=0.059 Sum_probs=234.4
Q ss_pred HHHHHHHHHHHHHHhhhhHHHhhcccchHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCcccccccccCCCCCccchhH
Q 007580 108 SNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQM 187 (597)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~G~lsD~~~GR~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~ 187 (597)
+.++++|.++.++|.+++|+++|| +|||..+.++.++..++.++..++... +..
T Consensus 63 S~~vs~f~iG~~~Gs~~~~~la~~-~GRK~~l~~~~~l~~~~~~~~~~s~~~-------------------------~~~ 116 (485)
T KOG0569|consen 63 SLIVSIFFIGGMIGSFSSGLLADR-FGRKNALLLSNLLAVLAALLMGLSKSA-------------------------PSF 116 (485)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh-hcchHHHHHHHHHHHHHHHHHHHHHHh-------------------------hhH
Confidence 467788999999999999999999 899999999999988888887776331 467
Q ss_pred HHHHHHHHHHHHhhhchhhhhhhhhhccCCCCCchhhhhhhhHHHHHHHHHHHHHHHHHHHHH--HhhhccchHHHHHHH
Q 007580 188 LYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVV--YIQMEHGWGSAFGAL 265 (597)
Q Consensus 188 ~~l~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~R~~~~~~~~~~~~lg~~l~p~i~~--~i~~~~gw~~~f~i~ 265 (597)
.+++++|++.|+..|......+.++.|..|.+- ||..-.+..++..+|..++..++. .+...-.|++.+.+.
T Consensus 117 e~li~GR~i~Gl~~gl~~~~~pmyl~E~sP~~~------RG~~g~~~~~~~~~g~ll~~~~~l~~ilGt~~~W~~l~~~~ 190 (485)
T KOG0569|consen 117 EMLILGRLIVGLACGLSTGLVPMYLTEISPKNL------RGALGTLLQIGVVIGILLGQVLGLPSLLGTEDLWPYLLAFP 190 (485)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHhhcChhhh------ccHHHHHHHHHHHHHHHHHHHHccHHhcCCCcchHHHHHHH
Confidence 899999999999999999999999999999999 999999999999999999966652 234456799998888
Q ss_pred HHHHHHHHHHHHHhcCcccccCCCCCchhhHHHHHHHHHHhhhcccCccccccccc-cCCCcccccCCcccccCCcchhh
Q 007580 266 AIAMGISNMLFFIGTPLYRHRLPGGSPLTRVAQVLVAAFRKRHAAFSSSELIGLYE-VPGKHSAIKGSGKIAHTDDFRCL 344 (597)
Q Consensus 266 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~~~~~~~~~~~~~l 344 (597)
.+..++.+++..+ +||+|++ ++. +++.++|.+..+++...++..-.
T Consensus 191 ~i~~~~~l~~l~~--------------------------------~PESPk~-Ll~~k~~~~~A~~sl~~y~G~~~~~~~ 237 (485)
T KOG0569|consen 191 LIPALLQLALLPF--------------------------------LPESPKY-LLIKKGDEEEARKALKFYRGKEDVEAE 237 (485)
T ss_pred HHHHHHHHHHHhc--------------------------------CCCCcch-HHHHcCCHHHHHHHHHHHhCCCcchhH
Confidence 8776666555433 2344444 333 34444443333333221111111
Q ss_pred HH---Hhhhhhccc--CCCCCCccccchhhhhhhHhHhhhhhHHHHHHHHHHHhcchhhHHHHHhhhccc--------C-
Q 007580 345 DK---AALELKEDV--INPSPWKLCTVTQVEEVKTLVRLVPIPACTIMLNVILTEFLTLSVQQAYTMNTH--------M- 410 (597)
Q Consensus 345 ~~---a~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~- 410 (597)
+. ...+..... .....+.++.... .++.....+.+...+.+........++..+....++... .
T Consensus 238 ~e~~~~e~~~~~~~~~~~~sl~~~~~~~~--lR~~~~i~~~v~~~qq~sGi~ai~~Yst~i~~~aG~~~~~a~~an~~~g 315 (485)
T KOG0569|consen 238 IEEMLREIEEEELEKKKQISLRQLLKNPT--LRRPLLIGIVVSFAQQFSGINAIFFYSTSIFKTAGFTPEEAQYANLGIG 315 (485)
T ss_pred HHHHHHHHHHhccccccCCcHHHHhcCcc--hhHHHHHHHHHHHHHHhcCcceeHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 10 111111000 0111121111111 122222222222222222221112222222221111100 0
Q ss_pred -----------CCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhcCccccccCcCccchHHHHHHHHHHHH-HH
Q 007580 411 -----------GHPRGASQLQRVGIGLAVSILSVIWAGIFERYRRNYAISHGYEFSFLTAMPDLSAYWLLIQYCLIG-IA 478 (597)
Q Consensus 411 -----------~~~~~~~~~~~i~~G~~l~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~s~~~l~~~~~l~g-~g 478 (597)
..-++.+++..+.++..++.++.+++.+......... . . ++.. .+...++.. .-
T Consensus 316 ~v~~~~t~~~~~lid~~gRRpLll~~~~~~~~~~~~~~~~~~l~~~~~-~-----------~-~~y~-~i~~~~~~~~~f 381 (485)
T KOG0569|consen 316 IVNLLSTLVSPFLIDRLGRRPLLLISLSLMAVALLLMSIALFLSNSFG-S-----------W-LSYL-CIAAIFLFIISF 381 (485)
T ss_pred HHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhh-h-----------H-HHHH-HHHHHHHHHHhh
Confidence 1111122223344555555555555544432211110 0 0 1111 122222222 23
Q ss_pred HHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCCCCCccccCCCCcchhHHHHHHHHH
Q 007580 479 EVFCIVGLLEFLYEEAPDAMKSIGSAYAALAGGLGCFAASILNSIIKSVTGNPKKGQPNWLAQNINTGRFDYLYWLLAVL 558 (597)
Q Consensus 479 ~~~~~~~~~~~~~~~~P~~~rg~~~gl~~~~~~lg~~lg~~l~~~v~~~~g~~~~~~~~w~~~~l~~~~~~~~f~~~a~l 558 (597)
.....|..+-+..|.+|.+.|+.++++..+++++.+++-....+.+.+..| .++|.++.+.
T Consensus 382 ~~G~gpi~~fi~aELf~~~~R~aa~s~~~~~~w~~~fiv~~~fp~l~~~~g-------------------~~~filF~i~ 442 (485)
T KOG0569|consen 382 AIGPGPIPWFIGAELFPQSARSAAQSVATAVNWLSNFIVGFAFPPLQNVIG-------------------PYVFILFVIP 442 (485)
T ss_pred hcCCCchhHHHHHHhCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-------------------chhhHHHHHH
Confidence 334568889999999999999999999999999999999999999998887 4679999999
Q ss_pred HHHHHHHHHHhhhcccccccCCCCCchh
Q 007580 559 SVINFCAFLYSAYRYKYRSEQKHGNDYE 586 (597)
Q Consensus 559 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 586 (597)
+++.+++.+...||+|+|+.+|+.+..+
T Consensus 443 ~~~~~i~~~~~lPETkgr~~~eI~~~~~ 470 (485)
T KOG0569|consen 443 LAIFLIYLYRYLPETKGRTPYEIIEELE 470 (485)
T ss_pred HHHHHHHHHHhCcccCCCCHHHHHHHHH
Confidence 9999999999999999998766544443
No 52
>PF00854 PTR2: POT family; InterPro: IPR000109 This entry represents the POT (proton-dependent oligopeptide transport) family, which all appear to be proton dependent transporters. The transport of peptides into cells is a well-documented biological phenomenon which is accomplished by specific, energy-dependent transporters found in a number of organisms as diverse as bacteria and humans. The POT family of proteins is distinct from the ABC-type peptide transporters and was uncovered by sequence analyses of a number of recently discovered peptide transport proteins []. These proteins that seem to be mainly involved in the intake of small peptides with the concomitant uptake of a proton []. These integral membrane proteins are predicted to comprise twelve transmembrane regions.; GO: 0005215 transporter activity, 0006857 oligopeptide transport, 0016020 membrane; PDB: 4APS_A 2XUT_C.
Probab=99.89 E-value=1.3e-22 Score=214.33 Aligned_cols=333 Identities=33% Similarity=0.454 Sum_probs=220.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhccccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhhchhhhhhhhhhcc
Q 007580 136 YWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQ 215 (597)
Q Consensus 136 ~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~ 215 (597)
+|+++++.+++++|.+++++++...... ++.+...++++++++++|.|+.+|++.++++||
T Consensus 1 yktI~~g~~~~~~G~~ll~l~~~~~~~~-------------------~~~~~~~~~~gL~lia~G~G~~K~ni~~~~~dq 61 (372)
T PF00854_consen 1 YKTILLGSIVYLLGHVLLTLSAIPPSLP-------------------SGIQLGLFYIGLALIAVGTGGIKPNISPFGADQ 61 (372)
T ss_dssp HHHHHHHHHHHHHHHHH--HHHTSSSC-------------------------CHHHHHHHHHHHHHHCCHHHHHHHHHHC
T ss_pred CHhhhHHHHHHHHHHHHhHHHHhcchhh-------------------hhHHHHHHHHHHHHHHhccccccccHHHHHHHH
Confidence 5899999999999999988886643221 114567899999999999999999999999999
Q ss_pred CCCCCchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHhcCccccc-CCCCCchh
Q 007580 216 FDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGTPLYRHR-LPGGSPLT 294 (597)
Q Consensus 216 ~~~~~~~~~~~R~~~~~~~~~~~~lg~~l~p~i~~~i~~~~gw~~~f~i~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 294 (597)
++++++ ..|.++|+++|++.|+|+.+++.+.++++++.||.++|+++++.+++++++++..++.+++. ++.++++.
T Consensus 62 ~~~~~~---~~~~~~F~~fY~~in~G~~~~~~~~~~i~~~~~~~~~f~i~~~~~~~~~~~f~~~~~~y~~~~~~~~~~~~ 138 (372)
T PF00854_consen 62 YDEDDD---SRRDSFFNWFYWGINIGSLFSPTLVPYIQQNYGWFLGFGIPAIGMLLALIVFLSGRKRYRKVAPPGGSPLT 138 (372)
T ss_dssp SSTTTT---THHHHHHHHHHHHHHHHHHHHHHCCCHHHHCS-HHHHHHHHHHHHHHHHHHHHCCCCTT--S-----S--S
T ss_pred hcccch---hhhhhhHHHHHHHHhhhhHhhcccchhhccccchhhhhhHHHHHHHHHHHHHHhCCcCCcCcCccCCcccc
Confidence 998742 23999999999999999999999999999999999999999999999999999999999887 67777777
Q ss_pred h-HHHHHHHHHHhhhcccCccccccccccCCCcccccCCcccccCCcchhhHHHhhhhhcccCCCCCCc-cccchhhhhh
Q 007580 295 R-VAQVLVAAFRKRHAAFSSSELIGLYEVPGKHSAIKGSGKIAHTDDFRCLDKAALELKEDVINPSPWK-LCTVTQVEEV 372 (597)
Q Consensus 295 ~-~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~-~~~~~~~~~~ 372 (597)
+ ...++....+++....|....+ ++......+ .... ........ +........ ..|. .|+.+++++.
T Consensus 139 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~----~~~~--~~~~~~~~-~~~~~~~~~---~~~~~~~~~~~~~~~ 207 (372)
T PF00854_consen 139 NFIKLVLVAAFKKRKLAVPKGSSW-LDWALFQYS----ERSI--FGIIVFIR-AAVIFFPEI---FFWALFCQVQRVEEL 207 (372)
T ss_dssp --SHHHHHHHHHHHCCCH-HHHHH-HHHHHHHHC----CCCC--CCCCCHHH-HHHHHCCCH---HHHTTTSSTTTHHHC
T ss_pred hhHHHHHHHHHHHhhcccccchHH-HHHhhhhhh----hhhh--hhhhhhcc-chhhhhhhh---hhcccCCccceeeee
Confidence 7 5566666777666555433222 111100000 0000 00001111 111111100 0111 1455677888
Q ss_pred hHhHhhhhhHHHHHHHHHHHhcchhhHHHHHhhhcccC----------------------------------CCCCCCCh
Q 007580 373 KTLVRLVPIPACTIMLNVILTEFLTLSVQQAYTMNTHM----------------------------------GHPRGASQ 418 (597)
Q Consensus 373 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------------------------~~~~~~~~ 418 (597)
+.+.+.++.+.+.++++..+.+..+....+...+|+.+ +++..++.
T Consensus 208 k~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ip~~~l~~~n~i~iii~~pi~~~~~~p~~~~~~~~~~ 287 (372)
T PF00854_consen 208 KALIRFLPIFLFWIFYWQMYSQLNTFFLLQVPQMDRGIGGLFGIPPAWLQSFNPIFIIIFIPILDRVVYPLLRRGIQPSP 287 (372)
T ss_dssp CHHHCHHHCCCHHHHHHHHCTCCHHHHHHCGGGTTT-SS------SGGGTTHHHHHCHHHHHHHHHHCCCTTTT------
T ss_pred eeeeeccccCeEEEEeeehhhhhhhHHHHhccccccccccccccccchhhhHHHHHHHHHHHHHHHHHhHHhhhcccchh
Confidence 88889999998999999999998888887776664333 44556788
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhcCccccccCcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhh
Q 007580 419 LQRVGIGLAVSILSVIWAGIFERYRRNYAISHGYEFSFLTAMPDLSAYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPDAM 498 (597)
Q Consensus 419 ~~~i~~G~~l~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~s~~~l~~~~~l~g~g~~~~~~~~~~~~~~~~P~~~ 498 (597)
..++++|++++.+++++...++.+|.....+++. .+.+|.++.+++..++|.+..+...+..++.+|++.
T Consensus 288 ~~k~~~G~~~~~~~~~~~~~v~~~r~~~~~~~~~----------~~~~~~~~~~~~~~~~e~~l~~~g~~~~~~~a~~~~ 357 (372)
T PF00854_consen 288 PQKFGIGMVFAILAMFVAAIVEIRRLCYAQPCGK----------VSPWWQVPMYIFWLIPEYFLSGTGESAAYEFAPSRA 357 (372)
T ss_dssp HHHHHHH-HHHHHHHHTTTHHHH---HH----TT------------THHHHHHHHHHHHHHHTTTTHHHHHHHHHTTTT-
T ss_pred hhhhhHHHHHHHHHHHHHHHHHhhhhhcccccCC----------CChhhHHHHHHHHHHHHHHhhHHHHHHHHHhhHHhh
Confidence 9999999999999999988888877666555542 344788899999999999999988887777777777
Q ss_pred HHHHHHHHHHHHH
Q 007580 499 KSIGSAYAALAGG 511 (597)
Q Consensus 499 rg~~~gl~~~~~~ 511 (597)
.+..+|+++....
T Consensus 358 p~~m~~~~~~~~~ 370 (372)
T PF00854_consen 358 PSSMMGIWFALSA 370 (372)
T ss_dssp SSSSTHHHHHHH-
T ss_pred hHHHHHHHHHHhc
Confidence 7777766665543
No 53
>PRK11652 emrD multidrug resistance protein D; Provisional
Probab=99.89 E-value=6e-20 Score=195.55 Aligned_cols=180 Identities=14% Similarity=0.107 Sum_probs=148.8
Q ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHhhhhHHHhhcccchHHHHHHHHHH
Q 007580 66 GGWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTI 145 (597)
Q Consensus 66 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~lsD~~~GR~~~~~~~~~l 145 (597)
+.+|..+.+.+..++..+..+...+.+ +++.+++|.+..+.+++.+.+.++..++.++.|+++|| +|||+++.++.++
T Consensus 5 ~~~~~l~~~~~~~~~~~~~~~~~~p~~-~~i~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~Dr-~grr~~~~~~~~~ 82 (394)
T PRK11652 5 RNVNLLFMLVLLVAVGQMAQTIYVPAI-ADMARDLNVREGAVQAVMAAYLLTYGLSQLFYGPLSDR-VGRRPVILVGMSI 82 (394)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHhccH-HHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhhhHHHh-cCChHHHHHHHHH
Confidence 355666666666667676655555544 45678899999999999999999999999999999999 8999999999998
Q ss_pred HHHHHHHHHHhhhccccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhhchhhhhhhhhhccCCCCCchhhh
Q 007580 146 YLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKT 225 (597)
Q Consensus 146 ~~~g~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~ 225 (597)
..++..++..+ .+...+++.|++.|++.+...+....+..|.+++++
T Consensus 83 ~~~~~~~~~~~----------------------------~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~----- 129 (394)
T PRK11652 83 FILGTLVALFA----------------------------HSLTVLIAASAIQGLGTGVGGVMARTLPRDLYEGTQ----- 129 (394)
T ss_pred HHHHHHHHHHH----------------------------ccHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCHHH-----
Confidence 88888887765 467788999999999999888888889999998887
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHhcC
Q 007580 226 HLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGTP 281 (597)
Q Consensus 226 ~R~~~~~~~~~~~~lg~~l~p~i~~~i~~~~gw~~~f~i~~~~~~~~~~~~~~~~~ 281 (597)
|+...+++..+..++..++|.+++++.+..|||+.|++.++..++..++.....+
T Consensus 130 -~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~ 184 (394)
T PRK11652 130 -LRHANSLLNMGILVSPLLAPLIGGLLTTLFGWRACYLFLLLLGAGVTFSMARWMP 184 (394)
T ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHHHHhCC
Confidence 8999999999999999999999999998899999999877665544443333333
No 54
>TIGR00895 2A0115 benzoate transport.
Probab=99.89 E-value=2.7e-20 Score=197.20 Aligned_cols=181 Identities=16% Similarity=0.128 Sum_probs=149.9
Q ss_pred CCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHhhhhHHHhhcccchHHHHHHHHH
Q 007580 65 TGGWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTT 144 (597)
Q Consensus 65 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~lsD~~~GR~~~~~~~~~ 144 (597)
+.+|+.+...++..+......+.. ....+++.+++|.+..+.+++.+.+.++..++.++.|+++|| +|||+++.++.+
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~-~g~~~~~~~~~~ 90 (398)
T TIGR00895 13 RYQWRAIILSFLIMLMDGYDLAAM-GFAAPAISAEWGLDPVQLGFLFSAGLIGMAFGALFFGPLADR-IGRKRVLLWSIL 90 (398)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHH-HhhHHHHhhccCCCHHHHHHHHHHHHHHHHHHHHHhHHHHHH-hhhHHHHHHHHH
Confidence 445666666666666666554433 445567778899999999999999999999999999999999 899999999999
Q ss_pred HHHHHHHHHHHhhhccccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhhchhhhhhhhhhccCCCCCchhh
Q 007580 145 IYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYK 224 (597)
Q Consensus 145 l~~~g~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~ 224 (597)
+..++.+++.++ .+...+++.|++.|++.+...+...++++|.+|+++
T Consensus 91 ~~~~~~~~~~~~----------------------------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~---- 138 (398)
T TIGR00895 91 LFSVFTLLCALA----------------------------TNVTQLLILRFLAGLGLGGLMPNLNALVSEYAPKRF---- 138 (398)
T ss_pred HHHHHHHHHHHc----------------------------cchHHHHHHHHHHhcccccchhhHHHHHHHHcCHHh----
Confidence 888888777765 456788899999999999999999999999999988
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHhcC
Q 007580 225 THLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGTP 281 (597)
Q Consensus 225 ~~R~~~~~~~~~~~~lg~~l~p~i~~~i~~~~gw~~~f~i~~~~~~~~~~~~~~~~~ 281 (597)
|++.++++.....+|..++|.+++++.+..||++.|++.++...+..++.+...+
T Consensus 139 --r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 193 (398)
T TIGR00895 139 --RGTAVGLMFCGYPIGAAVGGFLAGWLIPVFGWRSLFYVGGIAPLLLLLLLMRFLP 193 (398)
T ss_pred --hchhHhhHhhHHHHHHHHHHHHHHHHhhcccceeehhhhhhHHHHHHHHHHHhCC
Confidence 9999999999999999999999999999999999999876555444444443333
No 55
>PRK11195 lysophospholipid transporter LplT; Provisional
Probab=99.89 E-value=1.7e-19 Score=192.13 Aligned_cols=163 Identities=13% Similarity=0.057 Sum_probs=136.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHhhhhHHHhhcccchHHHHHHHHHHHHHH
Q 007580 70 AALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAG 149 (597)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~lsD~~~GR~~~~~~~~~l~~~g 149 (597)
.++.+++..++..++...+...++. +.++++.+..+.+++.+.+.+...++.+++|+++|| +|||++++++.+++.++
T Consensus 4 ~f~~l~~~~~~~~~~~~~~~~~~~~-~~~~~~~s~~~~~~~~~~~~l~~~l~~~~~G~laDr-~grr~vl~~~~~~~~~~ 81 (393)
T PRK11195 4 GFYAIMAAQFFSALADNALLFAAIA-LLKELHYPDWSQPLLQMFFVLAYIVLAPFVGAFADS-FPKGRVMFIANGIKLLG 81 (393)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHH-HHHHcCCcHHHHHHHHHHHHHHHHHHHhhhhHhhhc-cCCchhhHHHHHHHHHH
Confidence 3455667777777765555444444 467899999999999999999999999999999999 89999999999999888
Q ss_pred HHHHHHhhhccccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhhchhhhhhhhhhccCCCCCchhhhhhhh
Q 007580 150 LTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDR 229 (597)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~R~~ 229 (597)
.+.+..+ .+ .++.|+++|++.+...|...+++.|++|+++ |++
T Consensus 82 ~~~~~~~----------------------------~~---~~~~r~l~G~~~a~~~pa~~a~i~~~~~~~~------~~~ 124 (393)
T PRK11195 82 CLLMLFG----------------------------IH---PLLAYGLVGIGAAAYSPAKYGILTELLPGEK------LVK 124 (393)
T ss_pred HHHHHHH----------------------------HH---HHHHHHHHHHHHHHHHHHHHHHHHHHcCHHH------HHH
Confidence 8777654 23 2678999999999999999999999999998 999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHH
Q 007580 230 FFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGIS 272 (597)
Q Consensus 230 ~~~~~~~~~~lg~~l~p~i~~~i~~~~gw~~~f~i~~~~~~~~ 272 (597)
+.++.....++|..+||.++|++.+. .|+..+++.+...+++
T Consensus 125 a~~~~~~~~~~~~~~Gp~lgG~l~~~-~~~~~~~i~~~~~~~~ 166 (393)
T PRK11195 125 ANGWMEGSTIAAILLGTVLGGALADP-HAEAALAVCALIYLLA 166 (393)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHH
Confidence 99999999999999999999999885 4777777665544433
No 56
>PRK03893 putative sialic acid transporter; Provisional
Probab=99.88 E-value=2.8e-20 Score=204.26 Aligned_cols=168 Identities=14% Similarity=0.209 Sum_probs=148.2
Q ss_pred CCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHhhhhHHHhhcccchHHHHHHHHH
Q 007580 65 TGGWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTT 144 (597)
Q Consensus 65 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~lsD~~~GR~~~~~~~~~ 144 (597)
+.+|+.+..+.+..++..+..+.+.. +.+++.+++|++..+.++..+.+.++..++.+++|+++|| +|||+++.++.+
T Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~i~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr-~g~r~~~~~~~~ 93 (496)
T PRK03893 16 RAQWKAFSAAWLGYLLDGFDFVLITL-VLTEVQGEFGLTTVQAASLISAAFISRWFGGLLLGAMGDR-YGRRLAMVISIV 93 (496)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCcHHHHHHHHH
Confidence 45677777777777777777655544 4567788999999999999999999999999999999999 899999999999
Q ss_pred HHHHHHHHHHHhhhccccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhhchhhhhhhhhhccCCCCCchhh
Q 007580 145 IYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYK 224 (597)
Q Consensus 145 l~~~g~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~ 224 (597)
+..++.+++.++ .+...+++.|++.|++.++..+....++.|.+|+++
T Consensus 94 ~~~~~~~~~~~~----------------------------~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~---- 141 (496)
T PRK03893 94 LFSVGTLACGFA----------------------------PGYWTLFIARLVIGMGMAGEYGSSATYVIESWPKHL---- 141 (496)
T ss_pred HHHHHHHHHHHH----------------------------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHH----
Confidence 999998888876 567889999999999999999999999999999998
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHhhhccchHHHHHHHHHH
Q 007580 225 THLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIA 268 (597)
Q Consensus 225 ~~R~~~~~~~~~~~~lg~~l~p~i~~~i~~~~gw~~~f~i~~~~ 268 (597)
|++.+++++...++|..++|.+.+++.+..+||+.|++.++.
T Consensus 142 --r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~w~~~f~~~~~~ 183 (496)
T PRK03893 142 --RNKASGFLISGFSIGAVVAAQVYSLVVPVWGWRALFFIGILP 183 (496)
T ss_pred --HHHHHHHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHH
Confidence 999999999999999999999999999999999999875443
No 57
>PLN00028 nitrate transmembrane transporter; Provisional
Probab=99.88 E-value=1.6e-19 Score=197.14 Aligned_cols=175 Identities=14% Similarity=0.064 Sum_probs=135.7
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHhhhhHHHhhcccchHHHHHHHHHHH
Q 007580 67 GWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIY 146 (597)
Q Consensus 67 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~lsD~~~GR~~~~~~~~~l~ 146 (597)
+++.+.......++..+..+...+. .+++.+++|++..+.+++.+.+.++..++.+++|+++|| +|||+++.++.++.
T Consensus 34 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~~~~gls~~~~g~~~~~~~~~~~~~~~~~G~l~dr-~G~r~~~~~~~~~~ 111 (476)
T PLN00028 34 HMRAFHLSWISFFTCFVSTFAAAPL-LPIIRDNLNLTKSDIGNAGIASVSGSIFSRLAMGPVCDL-YGPRYGSAFLLMLT 111 (476)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCChHHHHHHHHHH
Confidence 4445555555555655655555443 457788999999999999999999999999999999999 89999999999888
Q ss_pred HHHHHHHHHhhhccccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhhchhhhhhhhhhccCCCCCchhhhh
Q 007580 147 LAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTH 226 (597)
Q Consensus 147 ~~g~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~ 226 (597)
.++.++++++ .+...+++.|++.|++.+...+ ....++|++|+++
T Consensus 112 ~~~~~~~~~~----------------------------~s~~~l~~~r~l~G~~~~~~~~-~~~~i~~~~~~~~------ 156 (476)
T PLN00028 112 APAVFCMSLV----------------------------SSATGFIAVRFFIGFSLATFVS-CQYWMSTMFNGKI------ 156 (476)
T ss_pred HHHHHHHHHh----------------------------cCHHHHHHHHHHHHHHHHhhHH-HHHHHHHhcChhh------
Confidence 8888877765 4567788899999999887543 4567899999998
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHhh----h-----ccchHHHHHHHHHHHHHHHHHHHH
Q 007580 227 LDRFFNFFYLSVTVGAIVAFTLVVYIQ----M-----EHGWGSAFGALAIAMGISNMLFFI 278 (597)
Q Consensus 227 R~~~~~~~~~~~~lg~~l~p~i~~~i~----~-----~~gw~~~f~i~~~~~~~~~~~~~~ 278 (597)
|++++++.+...++|..+++.+.+.+. + ..|||+.|++.+++.++..++.++
T Consensus 157 rg~a~g~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~gWr~~f~i~g~l~l~~~l~~~~ 217 (476)
T PLN00028 157 VGTANGIAAGWGNLGGGVTQLLMPLVFPLIKDAGAPSFTAWRIAFFVPGLLHIIMGILVLT 217 (476)
T ss_pred eeHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcchhhhHHHHHHHHHHHHHHHHHHHH
Confidence 999999988777777777766665442 2 258999999988776655544444
No 58
>TIGR00898 2A0119 cation transport protein.
Probab=99.88 E-value=1.8e-20 Score=206.25 Aligned_cols=145 Identities=12% Similarity=0.088 Sum_probs=129.2
Q ss_pred HHHHHhhCCC---hHHHHHHHHHHHHHHHHHhhhhHHHhhcccchHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCccc
Q 007580 94 TFMFYVMHKS---FADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCD 170 (597)
Q Consensus 94 ~yl~~~~~~s---~~~a~~~~~~~~~~~~~~~~~~G~lsD~~~GR~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~c~ 170 (597)
+.+.++++++ ..+.++..+.+.++..++.++.|+++|| +|||++++++.++..++.++++++
T Consensus 113 ~~i~~e~~l~c~~~~~~~~~~s~~~~g~~~g~~~~g~l~Dr-~Grr~~~~~~~~~~~i~~~~~~~~-------------- 177 (505)
T TIGR00898 113 STIVTEWDLVCEDAWKVDLTQSCFFVGVLLGSFVFGYLSDR-FGRKKVLLLSTLVTAVSGVLTAFS-------------- 177 (505)
T ss_pred ccEEEEecceechHHHHHHHHHHHHHHHHHHHHhHHHhhhh-ccchHHHHHHHHHHHHHHHHHHHc--------------
Confidence 3467789998 8899999999999999999999999999 899999999999999988888876
Q ss_pred ccccccCCCCCccchhHHHHHHHHHHHHHhhhchhhhhhhhhhccCCCCCchhhhhhhhHHHHHHHHHHHHHHHHHHHHH
Q 007580 171 RISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVV 250 (597)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~R~~~~~~~~~~~~lg~~l~p~i~~ 250 (597)
+++..+++.|++.|++.++..+...+++.|.+|+++ |+...+++..+..+|..++|.++.
T Consensus 178 --------------~~~~~~~~~r~l~G~~~~~~~~~~~~~~~e~~~~~~------r~~~~~~~~~~~~~g~~~~~~~~~ 237 (505)
T TIGR00898 178 --------------PNYTVFLVFRLLVGMGIGGIWVQAVVLNTEFLPKKQ------RAIVGTLIQVFFSLGLVLLPLVAY 237 (505)
T ss_pred --------------ccHHHHHHHHHHHHhhccchHHHHHHHhheecChhh------hHHHHHHHHHHHHHHHHHHHHHHH
Confidence 578899999999999999999999999999999999 999999999999999999998887
Q ss_pred HhhhccchHHHHHHHHHHHHHHHHHH
Q 007580 251 YIQMEHGWGSAFGALAIAMGISNMLF 276 (597)
Q Consensus 251 ~i~~~~gw~~~f~i~~~~~~~~~~~~ 276 (597)
++.+ ||+.|++.++..++..+..
T Consensus 238 ~~~~---wr~~~~~~~i~~~~~~~~~ 260 (505)
T TIGR00898 238 FIPD---WRWLQLAVSLPTFLFFLLS 260 (505)
T ss_pred HhhH---HHHHHHHHHHHHHHHHHHH
Confidence 6654 9999998887666555544
No 59
>PRK10473 multidrug efflux system protein MdtL; Provisional
Probab=99.88 E-value=4.1e-19 Score=188.96 Aligned_cols=173 Identities=16% Similarity=0.096 Sum_probs=144.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHhhhhHHHhhcccchHHHHHHHHHHHHHHHHH
Q 007580 73 FIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTG 152 (597)
Q Consensus 73 ~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~lsD~~~GR~~~~~~~~~l~~~g~~~ 152 (597)
...+..+....+.....+. .+.+.+++|.+..+.++..+.+.++..++.++.|+++|| +|||+.+.++.+++.++..+
T Consensus 7 ~~~~~~~~~~~~~~~~~~~-lp~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~Dr-~g~r~~l~~~~~~~~i~~~~ 84 (392)
T PRK10473 7 CSFALVLLYPAGIDMYLVG-LPRIAADLNASEAQLHIAFSVYLAGMAAAMLFAGKIADR-SGRKPVAIPGAALFIIASLL 84 (392)
T ss_pred HHHHHHHHHHHHHHHHhhh-HHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhHhHHHHH-hCChHHHHHHHHHHHHHHHH
Confidence 3444445555554444444 455678899999999999999999999999999999999 89999999999999988888
Q ss_pred HHHhhhccccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhhchhhhhhhhhhccCCCCCchhhhhhhhHHH
Q 007580 153 ITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFN 232 (597)
Q Consensus 153 ~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~R~~~~~ 232 (597)
+..+ .+...+++.|+++|++.+...+...+++.|.+|+++ |++.++
T Consensus 85 ~~~~----------------------------~~~~~~~~~~~l~g~~~~~~~~~~~~~i~~~~~~~~------r~~~~~ 130 (392)
T PRK10473 85 CSLA----------------------------ETSSLFLAGRFLQGIGAGCCYVVAFAILRDTLDDRR------RAKVLS 130 (392)
T ss_pred HHHh----------------------------CcHHHHHHHHHHHHhhhhHHHHHHHHHHHHHcCHHH------HHHHHH
Confidence 8765 456778889999999999999999999999999998 999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHhcC
Q 007580 233 FFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGTP 281 (597)
Q Consensus 233 ~~~~~~~lg~~l~p~i~~~i~~~~gw~~~f~i~~~~~~~~~~~~~~~~~ 281 (597)
+++...++|..++|.+++++.+..||++.|++.++..++..++.+...+
T Consensus 131 ~~~~~~~i~~~~~~~i~~~l~~~~g~~~~~~~~~~~~~i~~~~~~~~~~ 179 (392)
T PRK10473 131 LLNGITCIIPVLAPVLGHLIMLKFPWQSLFYTMAAMGILVLLLSLFILK 179 (392)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCcChHHHHHHHHHHHHHHHHHHHHHcC
Confidence 9999999999999999999888889999999887766655554444443
No 60
>TIGR00897 2A0118 polyol permease family. This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis.
Probab=99.88 E-value=5.3e-19 Score=188.93 Aligned_cols=174 Identities=13% Similarity=0.067 Sum_probs=142.6
Q ss_pred ccCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHhhhhHHHhhcccchHHHHHHH
Q 007580 63 SKTGGWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIF 142 (597)
Q Consensus 63 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~lsD~~~GR~~~~~~~ 142 (597)
.+-+-||.+....+..++..++.+....++++++ +++|.+..+.++..+.+.++..++.++.|+++|| +|||+++..+
T Consensus 7 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~-~~~g~s~~~~g~~~~~~~~~~~i~~~~~g~l~dr-~g~k~~l~~~ 84 (402)
T TIGR00897 7 QKIGIPLNLLWGYIGVVVFMTGDGLEQGWLSPFL-KALGLSPQQSASAFTLYGIAAAISAWISGVVAEI-IGPLKTMMIG 84 (402)
T ss_pred HHcCCCchhhHHHHHHHHHHHhhhhHHHhHHHHH-HHhCCCHHHhHHHHHHHHHHHHHHHHHHHHHHHH-cCcHHHHHHH
Confidence 3345566777788888888888777777888887 6789999999999999999999999999999999 8999999999
Q ss_pred HHHHHHHHHHHHHhhhccccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhhchhhhhhhhhhccCCCCCch
Q 007580 143 TTIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKD 222 (597)
Q Consensus 143 ~~l~~~g~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~ 222 (597)
.++..++.+++..... +. .+...+++.|++.|+|.+...+...+.+.+.+|+++
T Consensus 85 ~~~~~~~~~~~~~~~~----------~~--------------~~~~~l~~~~~i~G~g~~~~~~~~~~~~~~~~~~~~-- 138 (402)
T TIGR00897 85 LLLWCVGHAAFIVFGL----------GH--------------ANYPLILLFYGIRGLGYPLFAYSFLVWVVYNTKQDN-- 138 (402)
T ss_pred HHHHHHHHHHHHHHhc----------cC--------------ccHHHHHHHHHHHHcchHHHHhHHHHHHHHhCCHHH--
Confidence 9998888765532110 00 356677889999999998888888888899999988
Q ss_pred hhhhhhhHHHHHHHHHHHHH-HHHHHHHHHhhhccchHHHHHHHHHH
Q 007580 223 YKTHLDRFFNFFYLSVTVGA-IVAFTLVVYIQMEHGWGSAFGALAIA 268 (597)
Q Consensus 223 ~~~~R~~~~~~~~~~~~lg~-~l~p~i~~~i~~~~gw~~~f~i~~~~ 268 (597)
|++++++++...++|. .++|.+++++.+..||+..+|.....
T Consensus 139 ----~g~~~g~~~~~~~~g~~~~g~~~~~~l~~~~g~~~~~~~~~~~ 181 (402)
T TIGR00897 139 ----LSSAVGWFWAVYSIGIGVFGSYYSSYAIPAFGEMNTLWSALAF 181 (402)
T ss_pred ----HHHHHHHHHHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHH
Confidence 9999999999999996 58999999998888977666654443
No 61
>TIGR00902 2A0127 phenyl proprionate permease family protein. This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules.
Probab=99.88 E-value=4.2e-19 Score=188.37 Aligned_cols=342 Identities=10% Similarity=-0.009 Sum_probs=214.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHhhhhHHHhhcccchHHHH----HHHHHHHH
Q 007580 72 LFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTI----AIFTTIYL 147 (597)
Q Consensus 72 ~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~lsD~~~GR~~~~----~~~~~l~~ 147 (597)
+.+.+..++..+++....++++.|+ +++|+|..+.+++.+.+.+...+++++.|+++|| +||+... .++..++.
T Consensus 7 ~~l~~~~~~~~~~~~~~~p~l~~~l-~~~g~s~~~ig~~~s~~~~~~~~~~~~~g~l~d~-~~~~~~~~~~~~~~~~l~~ 84 (382)
T TIGR00902 7 RWLALGFFGYFCAYGIFLPFFPAWL-KGIGLGEEMIGLLIGAALIARFAGGLFFAPLIKD-ANHIIIALRLLALASAIFA 84 (382)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-HHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCcHHHHHHHHHHHHHHHH
Confidence 3355556666676666678888888 5689999999999999999999999999999999 7985433 22222222
Q ss_pred HHHHHHHHhhhccccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhhchhhhhhhhhhccCCCCCchhhhhh
Q 007580 148 AGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHL 227 (597)
Q Consensus 148 ~g~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~R 227 (597)
+ .++..+ ++.+.+++.|.+++.+.+...|...++..+. .++ |
T Consensus 85 ~--~~~~~~----------------------------~~~~~l~~~~~l~~~~~~~~~p~~~al~~~~--~~~------~ 126 (382)
T TIGR00902 85 A--AFSAGA----------------------------HNAWLLFIAIGLFALFFSAGMPIGDALANTW--QKQ------F 126 (382)
T ss_pred H--HHHHhh----------------------------hhHHHHHHHHHHHHHHHccchhHHHHHHHHH--HHH------c
Confidence 1 122222 4677888999999999998888888876543 344 7
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHhcCcccccCCCCCchhhHHHHHHHHHHhh
Q 007580 228 DRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGTPLYRHRLPGGSPLTRVAQVLVAAFRKR 307 (597)
Q Consensus 228 ~~~~~~~~~~~~lg~~l~p~i~~~i~~~~gw~~~f~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 307 (597)
++.++......++|..++|.+++++.+++|||+.|++.++..++..+ .+...++.+++++..+......+......|
T Consensus 127 ~~~~g~~~~~~slG~~~g~~l~g~l~~~~g~~~~f~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-- 203 (382)
T TIGR00902 127 GLDYGKVRLIGSAAFIIGSALFGGLIGMFDEQNILAILTAGLAFMLI-GFLIKPTIPPKDAIPEDESQGDSAFIALLK-- 203 (382)
T ss_pred CCCccHHHHHHHHHHHHHHHHHHHHHHHcChhHHHHHHHHHHHHHHH-HHHcCCCCCCCccccccccccchhHHHHHc--
Confidence 88899999999999999999999999999999999876654332222 222222111110000000000000000000
Q ss_pred hcccCccccccccccCCCcccccCCcccccCCcchhhHHHhhhhhcccCCCCCCccccchhhhhhhHhHhhhh-hHHHHH
Q 007580 308 HAAFSSSELIGLYEVPGKHSAIKGSGKIAHTDDFRCLDKAALELKEDVINPSPWKLCTVTQVEEVKTLVRLVP-IPACTI 386 (597)
Q Consensus 308 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~~~~~ 386 (597)
+ |.+...+. ..+...
T Consensus 204 ---------------------------------------------------------------~-~~~~~~l~~~~l~~~ 219 (382)
T TIGR00902 204 ---------------------------------------------------------------N-PMNLRFLAAVCLIQG 219 (382)
T ss_pred ---------------------------------------------------------------C-hHHHHHHHHHHHHHH
Confidence 0 11111110 111111
Q ss_pred HHHHHHhcchhhHHHHHhhhcccC--------------------CCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q 007580 387 MLNVILTEFLTLSVQQAYTMNTHM--------------------GHPRGASQLQRVGIGLAVSILSVIWAGIFERYRRNY 446 (597)
Q Consensus 387 ~~~~~~~~~~~~~~~~~~~~~~~~--------------------~~~~~~~~~~~i~~G~~l~~~~~~~~~~~~~~~~~~ 446 (597)
.....+...+. +. +..+.+... +..++.+..+.+.++.++..+.....+..
T Consensus 220 ~~~~~~~~~~~-~l-~~~g~s~~~~g~l~~~~~~~~i~~~~~~~~l~~r~g~~~~l~~~~~~~~~~~~~~~~~------- 290 (382)
T TIGR00902 220 AHAAYYGFSAI-YW-QAAGISASATGLLWGIGVLAEIIIFAFSNKLFQNCSARDLLLISAIACVGRWAIIGAI------- 290 (382)
T ss_pred HHHHHHHHHHH-HH-HHCCCCHhHHHHHHHHHHHHHHHHHHHhHHHHhhCCHHHHHHHHHHHHHHHHHHHHhH-------
Confidence 11111111111 11 101111000 22334455555666666666665555433
Q ss_pred hhhcCccccccCcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHH-HHHHHHHHHHHHHHHHhh
Q 007580 447 AISHGYEFSFLTAMPDLSAYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPDAMKSIGSAYAA-LAGGLGCFAASILNSIIK 525 (597)
Q Consensus 447 ~~~~g~~~~~~~~~~~~s~~~l~~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~gl~~-~~~~lg~~lg~~l~~~v~ 525 (597)
.+.+.++...++.++..++..+....++.+. |++.|++++++++ ...++|..+++.+.|.+.
T Consensus 291 ----------------~~~~~~~~~q~l~g~~~~~~~~~~~~~i~~~-~~~~~~~~q~~~~~~~~g~g~~~g~~~~G~l~ 353 (382)
T TIGR00902 291 ----------------EAFPLIFLLQILHCGTFAVCHLAAMRYIAAQ-PGSEIAKLQALYNALAMGGLIAIFTAFAGFIY 353 (382)
T ss_pred ----------------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-CHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3555566667899999999999999999988 9999999999987 577899999999999988
Q ss_pred hccCCCCCCCCCccccCCCCcchhHHHHHHHHHHHHHHHH
Q 007580 526 SVTGNPKKGQPNWLAQNINTGRFDYLYWLLAVLSVINFCA 565 (597)
Q Consensus 526 ~~~g~~~~~~~~w~~~~l~~~~~~~~f~~~a~l~~l~~~~ 565 (597)
+..| ...|+..++++++++++
T Consensus 354 ~~~g-------------------~~~~~~~~~~~~~~~~~ 374 (382)
T TIGR00902 354 PTLG-------------------AGTFVFMAIIAAAAFFL 374 (382)
T ss_pred Hhcc-------------------HHHHHHHHHHHHHHHHH
Confidence 7655 35688888888766544
No 62
>COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism]
Probab=99.87 E-value=3.2e-20 Score=189.21 Aligned_cols=173 Identities=13% Similarity=0.098 Sum_probs=151.7
Q ss_pred HHHHHHHHHHHHHHHHHHH---HHHHHHHhhCCChHHHHHHHHHHHHHHHHHhhhhHHHhhcccchHHHHHHHHHHHHHH
Q 007580 73 FIFGNEMAERMAYFGLSVN---MVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAG 149 (597)
Q Consensus 73 ~~~~~~~~~~~~~~~~~~~---l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~lsD~~~GR~~~~~~~~~l~~~g 149 (597)
-++...++...++|.+.-+ ..+++.++.++|.++.+++.+.+.+++.++-.+.|.++|| .+.|+.+.+++++..+.
T Consensus 29 qif~~~fiGYa~fYl~RknF~~a~p~l~e~~~lsk~~lG~i~s~f~i~YG~sKf~~G~~sDr-~npr~fm~~gLilsai~ 107 (448)
T COG2271 29 QIFLSIFIGYAAFYLTRKNFNLAMPALIEDGGLSKTQLGILGSAFSITYGVSKFVMGVLSDR-SNPRYFMAFGLILSAIV 107 (448)
T ss_pred HHHHHHHHHHHHHHHHHHhHhhccHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhhhhccc-CCCceeehHHHHHHHHH
Confidence 3444556666777766644 3578889999999999999999999999999999999999 89999999999999999
Q ss_pred HHHHHHhhhccccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhhchhhhhhhhhhccCCCCCchhhhhhhh
Q 007580 150 LTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDR 229 (597)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~R~~ 229 (597)
.++++++ .+...+.+..++.|..+|.-+|.+...++.+|+.+| ||+
T Consensus 108 nil~Gfs----------------------------~s~~~~~~l~~lng~fQg~Gwpp~~~~i~~Wfsr~e------RG~ 153 (448)
T COG2271 108 NILFGFS----------------------------PSLFLFAVLWVLNGWFQGMGWPPCARTITHWFSRKE------RGT 153 (448)
T ss_pred HHHHhhh----------------------------hHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHcCccc------cCc
Confidence 9999987 467788889999999999999999999999999999 999
Q ss_pred HHHHHHHHHHHHHHHHHHHH--HHhhhccchHHHHHHHHHHHHHHHHHHHHhc
Q 007580 230 FFNFFYLSVTVGAIVAFTLV--VYIQMEHGWGSAFGALAIAMGISNMLFFIGT 280 (597)
Q Consensus 230 ~~~~~~~~~~lg~~l~p~i~--~~i~~~~gw~~~f~i~~~~~~~~~~~~~~~~ 280 (597)
..++++.+.|+|+++.|++. +++..+.+||.+|++++++.++..++.+...
T Consensus 154 ~~siWn~shNiGGal~~~~~~la~~~~~~~w~~~f~~pgiiaiival~~~~~~ 206 (448)
T COG2271 154 WWSIWNTSHNIGGALAPLVALLAFFAFHGGWRAAFYFPGIIAIIVALILLFLL 206 (448)
T ss_pred eEEEehhhhhcccchHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999 9999999999999999998766555544433
No 63
>KOG0254 consensus Predicted transporter (major facilitator superfamily) [General function prediction only]
Probab=99.87 E-value=5.3e-20 Score=202.79 Aligned_cols=390 Identities=13% Similarity=0.114 Sum_probs=224.6
Q ss_pred HHHHHHHHHHHHHHHHhhhhHHHhhcccchHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCcccccccccCCCCCccch
Q 007580 106 DSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSW 185 (597)
Q Consensus 106 ~a~~~~~~~~~~~~~~~~~~G~lsD~~~GR~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~ 185 (597)
+.+++.+.+.++..++.++.|+++|+ +|||++++++.+++.+|.++++.+ +
T Consensus 90 ~~s~~~s~~~lga~~g~l~~g~l~d~-~GRk~~l~~~~~~~~iG~ii~~~a----------------------------~ 140 (513)
T KOG0254|consen 90 RQGLLTSILNLGALVGSLLAGRLGDR-IGRKKTLLLAVVLFLIGAIIIALA----------------------------P 140 (513)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-hhhHHHHHHHHHHHHHHHHHHHHh----------------------------h
Confidence 34899999999999999999999998 899999999999999999999998 6
Q ss_pred hHHHHHHHHHHHHHhhhchhhhhhhhhhccCCCCCchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhc-cchHHHHHH
Q 007580 186 QMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQME-HGWGSAFGA 264 (597)
Q Consensus 186 ~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~R~~~~~~~~~~~~lg~~l~p~i~~~i~~~-~gw~~~f~i 264 (597)
+..+++++|++.|+|.|+.....+.+++|..|++. |+...+.+.+..++|..++..++....+. .+||..+++
T Consensus 141 ~~~~l~~GR~l~G~g~G~~~~~~piy~sEiap~~~------RG~l~~~~~l~~~~Gi~~~~~~~~~~~~~~~~Wr~~~~~ 214 (513)
T KOG0254|consen 141 SWYQLIVGRILTGLGVGGASVLAPVYISEIAPAHI------RGTLVSLYQLFITIGILLGYCINYGTSKVYAGWRIPLGL 214 (513)
T ss_pred hHHHHHHHHHHhccchhhhhhcchhhHhhcCChhh------hHHHHHHHHHHHHHHHHHHHHHhhhhccCCccHHHHHHH
Confidence 78999999999999999999999999999999999 99999999999999999995444444332 489988888
Q ss_pred HHHHHHHHHHHHHHhcCcccccCCCCCchhhHHHHHHHHHHhhhcccCccccccccccCCCcccccCCcccccCCcchhh
Q 007580 265 LAIAMGISNMLFFIGTPLYRHRLPGGSPLTRVAQVLVAAFRKRHAAFSSSELIGLYEVPGKHSAIKGSGKIAHTDDFRCL 344 (597)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l 344 (597)
..+..++..+. .+..++.++.-.+........+++ ...+. .. .++... +...+
T Consensus 215 ~~i~~~~~~~~-~~~~pesp~~L~~~g~~~~a~~~l-~~l~g--~~-~~~~~~----------------------~~~~~ 267 (513)
T KOG0254|consen 215 ALIPAVILALG-MLFLPESPRWLIEKGRLEEAKRSL-KRLRG--LS-PEDVEV----------------------ELELL 267 (513)
T ss_pred HHHHHHHHHHH-HHhCCCChHHHHHcCChHHHHHHH-HHHhC--CC-CcchHH----------------------HHHHH
Confidence 77766555555 444332211100011111111111 11111 00 000000 00000
Q ss_pred HHHhhhhhcccCCCCCCccccchhhhhhhHhHhhhhhHHHHHHHHHHHhcchhhHHHHHhhhccc-C-------------
Q 007580 345 DKAALELKEDVINPSPWKLCTVTQVEEVKTLVRLVPIPACTIMLNVILTEFLTLSVQQAYTMNTH-M------------- 410 (597)
Q Consensus 345 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~------------- 410 (597)
................|..+... ...|+....+.+..++.+......-.++..+.+....+.. .
T Consensus 268 ~~~~~~~~~~~~~~~~~~~l~~~--~~~~~~~i~~~l~~fqq~tG~~~~~~Y~~~if~~~g~~~~~~~~~~~~~~v~~~~ 345 (513)
T KOG0254|consen 268 KIKLLVEAEVAEGKASWGELFSP--KVRKRLIIGLLLQLFQQLTGINYVFYYSTTIFKSAGLKSDTFLASIILGVVNFLG 345 (513)
T ss_pred HHHHHHhhhcccccccHHHhcCc--chHHHHHHHHHHHHHHHHhCCceEEeehHHHHHhcCCCCchHHHHHHHHHHHHHH
Confidence 00000000000000011111110 1122222222222222222212112222222221111100 0
Q ss_pred -----CCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhcCccccccCcCccchHHHHHHHHHHHHHHHHHHHHH
Q 007580 411 -----GHPRGASQLQRVGIGLAVSILSVIWAGIFERYRRNYAISHGYEFSFLTAMPDLSAYWLLIQYCLIGIAEVFCIVG 485 (597)
Q Consensus 411 -----~~~~~~~~~~~i~~G~~l~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~s~~~l~~~~~l~g~g~~~~~~~ 485 (597)
-.-++..++..+..|...+.+++++++........... ......+..++...++.........|.
T Consensus 346 t~~~~~lvd~~gRr~lll~s~~~m~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~v~~f~~g~g~v 415 (513)
T KOG0254|consen 346 TLVATYLVDRFGRRKLLLFGAAGMSICLVILAVVGVFALYYPN----------SSKGAGWLAIVFLCLFIFSFAIGWGPV 415 (513)
T ss_pred HHHHHHHHHHhccHHHHHHhHHHHHHHHHHHHHHHHHhccCCC----------cccchhHHHHHHHHHHHHHHhcccccc
Confidence 00111122233444444455555444433211100000 000023333333334444444555677
Q ss_pred HHHHHHhhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCCCCCccccCCCCcchhHHHHHHHHHHHHHHH-
Q 007580 486 LLEFLYEEAPDAMKSIGSAYAALAGGLGCFAASILNSIIKSVTGNPKKGQPNWLAQNINTGRFDYLYWLLAVLSVINFC- 564 (597)
Q Consensus 486 ~~~~~~~~~P~~~rg~~~gl~~~~~~lg~~lg~~l~~~v~~~~g~~~~~~~~w~~~~l~~~~~~~~f~~~a~l~~l~~~- 564 (597)
.+.+..+.+|.+.|+.+.++....+++.+++-...........+ ....|..+++++.+...
T Consensus 416 ~w~~~sEifp~~~r~~~~s~~~~~n~~~~~~v~~~~~~~~~~~~------------------~~~~f~~f~~~~~~~~~~ 477 (513)
T KOG0254|consen 416 PWVIVSEIFPLRLRSKGASLAVAVNWLWNFLISFFFPFITEALG------------------IGGTFGYFGGICLLSLII 477 (513)
T ss_pred hhhhhhccCcHhHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhcc------------------ccchHHHHHHHHHHHHHH
Confidence 78888999999999999999999999999998777666544211 12356677777777777
Q ss_pred HHHHhhhcccccccCCCCCchhh
Q 007580 565 AFLYSAYRYKYRSEQKHGNDYEV 587 (597)
Q Consensus 565 ~~~~~~~~~~~~~~~~~~~~~~~ 587 (597)
+++++.+|+|+++.||++..++.
T Consensus 478 fv~~~~pETkg~sleei~~~~~~ 500 (513)
T KOG0254|consen 478 FVFFFVPETKGLTLEEINELFEE 500 (513)
T ss_pred HheEEcccCCCCcHHHHHHHHHc
Confidence 88999999999999887665544
No 64
>PRK11043 putative transporter; Provisional
Probab=99.87 E-value=1.4e-18 Score=185.45 Aligned_cols=165 Identities=16% Similarity=0.155 Sum_probs=137.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHhhhhHHHhhcccchHHHHHHHHHHHHHHHHHHHHhh
Q 007580 78 EMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCA 157 (597)
Q Consensus 78 ~~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~lsD~~~GR~~~~~~~~~l~~~g~~~~~~~~ 157 (597)
.++..++.....+.+ +.+.+++|.+..+.++..+.+.++..++.+++|+++|| +|||+++.++.++..++..++.++
T Consensus 15 ~~~~~~~~~~~~p~~-~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr-~g~r~~~~~~~~~~~~~~~~~~~~- 91 (401)
T PRK11043 15 SMLGFLATDMYLPAF-KAIQADLQTSASAVSASLSLFLAGFALGQLLWGPLSDR-YGRKPVLLAGLSLFALGSLGMLWV- 91 (401)
T ss_pred HHHHHHHHHHHHhhH-HHHHHHHCCCHHHHHHHHHHHHHHHHHHHHhhhhHHhh-cCCcHHHHHHHHHHHHHHHHHHHh-
Confidence 334444433333333 33678999999999999999999999999999999999 899999999998888888877765
Q ss_pred hccccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhhchhhhhhhhhhccCCCCCchhhhhhhhHHHHHHHH
Q 007580 158 TMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLS 237 (597)
Q Consensus 158 ~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~R~~~~~~~~~~ 237 (597)
.+...+++.|+++|++.+...+...+++.|.+|+++ |.+.++.....
T Consensus 92 ---------------------------~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~ 138 (401)
T PRK11043 92 ---------------------------ESAAQLLVLRFVQAVGVCSAAVIWQALVIDRYPAQK------ANRVFATIMPL 138 (401)
T ss_pred ---------------------------cCHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCcHH------HHHHHHHHHHH
Confidence 467788999999999998888888899999999887 88888888888
Q ss_pred HHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHHH
Q 007580 238 VTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFI 278 (597)
Q Consensus 238 ~~lg~~l~p~i~~~i~~~~gw~~~f~i~~~~~~~~~~~~~~ 278 (597)
..+|..++|.+++++.+..|||+.|++.++..++..++.+.
T Consensus 139 ~~~~~~~g~~i~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~ 179 (401)
T PRK11043 139 VALSPALAPLLGAWLLNHFGWQAIFATLFAITLLLILPTLR 179 (401)
T ss_pred HHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHH
Confidence 89999999999999999999999999887766655544433
No 65
>PRK09528 lacY galactoside permease; Reviewed
Probab=99.87 E-value=2.3e-19 Score=192.86 Aligned_cols=179 Identities=8% Similarity=-0.134 Sum_probs=120.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHhhhhHHHhhcccchHHHHHHHHHHHHHH
Q 007580 70 AALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAG 149 (597)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~lsD~~~GR~~~~~~~~~l~~~g 149 (597)
..+.+.+..++..++++.+.++++.|+++++|++..+.+++.+.+.++..+++++.|+++|| +|||+++.++..+..++
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~s~~~~g~~~s~~~l~~~i~~~~~G~l~Dr-~g~r~~~~~~~~~~~~~ 89 (420)
T PRK09528 11 NYWIFSLFFFFFFFIWSSWFSFFPIWLHDINGLSGTDTGIIFSANSLFALLFQPLYGLISDK-LGLKKHLLWIISGLLVL 89 (420)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCchHHHHHHHHHHHHH
Confidence 45666667777888878889999999999999999999999999999999999999999999 89999998876665554
Q ss_pred HHHHHHhhhccccCCCCCcccccccccCCCCCccchhHH-HHHHHHHHHHHhhhchhhhhhhhhhccCCCCCchhhhhhh
Q 007580 150 LTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQML-YLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLD 228 (597)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~-~l~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~R~ 228 (597)
...+...... .... ..+.+.++.++..+.........+.++.+... ..++
T Consensus 90 ~~~~~~~~~~-------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~g 140 (420)
T PRK09528 90 FGPFFIYVFA-------------------------PLLQYNILLGAIVGGIYLGFGFLAGAGAIEAYIERVS----RRSG 140 (420)
T ss_pred HHHHHHHHHH-------------------------HHHHHHHHHHHHHHHHHhhhhhccchhhhhhHHHHHH----hhcc
Confidence 4322211000 0000 11112222233223222222222333322111 1156
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHh
Q 007580 229 RFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIG 279 (597)
Q Consensus 229 ~~~~~~~~~~~lg~~l~p~i~~~i~~~~gw~~~f~i~~~~~~~~~~~~~~~ 279 (597)
..++......++|..++|.+++++.+ .+|++.|++.++..++..++.+..
T Consensus 141 ~~~g~~~~~~~~g~~i~~~~~g~l~~-~~~~~~f~~~~~~~~~~~~~~~~~ 190 (420)
T PRK09528 141 FEYGRARMWGSLGWALCAFIAGILFN-INPQINFWLGSGSALILLVLLFFA 190 (420)
T ss_pred ccchhhHHhhhHHHHHHHHHHHHHHh-cCchHhHHHHHHHHHHHHHHHhcc
Confidence 67777778889999999999999876 489999988777666555554443
No 66
>PRK15075 citrate-proton symporter; Provisional
Probab=99.86 E-value=6.6e-19 Score=190.17 Aligned_cols=176 Identities=15% Similarity=0.108 Sum_probs=133.5
Q ss_pred cCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChHHHH-HHHHHHHH-----HHHHHhhhhHHHhhcccchHH
Q 007580 64 KTGGWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSS-NAVNNFLG-----ISQASSVLGGFLADAYLGRYW 137 (597)
Q Consensus 64 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~-~~~~~~~~-----~~~~~~~~~G~lsD~~~GR~~ 137 (597)
+..||+.....++..+++.+....+... .+++.++++.+..+.+ +..+.... ...++.++.|+++|| +|||+
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~d~~~~~~~-~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ig~~~~G~l~Dr-~Grr~ 87 (434)
T PRK15075 10 RESKARAILRVTSGNFLEMFDFFLFGFY-ATAIAKTFFPAGNEFASLMLTFAVFGAGFLMRPLGAIVLGAYIDR-VGRRK 87 (434)
T ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHhCCCCCchHHHHHHHHHHHHHHHHhhhHHHHHHHHhhh-hchHH
Confidence 3446667888888888888887665544 5688889998776654 33333222 223678899999999 89999
Q ss_pred HHHHHHHHHHHHHHHHHHhhhccccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhhchhhhhhhhhhccCC
Q 007580 138 TIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFD 217 (597)
Q Consensus 138 ~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~~~ 217 (597)
+++.+.+++.++.++++++.+...+. ......++++|+++|++.+...++...+++|++|
T Consensus 88 ~l~~~~~~~~~~~~l~~~~~~~~~~~--------------------~~~~~~l~~~R~l~G~~~g~~~~~~~~~~~e~~p 147 (434)
T PRK15075 88 GLIVTLSIMASGTLLIAFVPGYATIG--------------------LAAPLLVLLGRLLQGFSAGVELGGVSVYLAEIAT 147 (434)
T ss_pred HHHHHHHHHHHHHHHHHhCCcHHHHH--------------------HHHHHHHHHHHHHhhccccccHHHHHHHHHhhCC
Confidence 99999999999999998862210000 0001257899999999999999999999999999
Q ss_pred CCCchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhh--------hccchHHHHHHHHH
Q 007580 218 ERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQ--------MEHGWGSAFGALAI 267 (597)
Q Consensus 218 ~~~~~~~~~R~~~~~~~~~~~~lg~~l~p~i~~~i~--------~~~gw~~~f~i~~~ 267 (597)
+++ |++.++++....++|..+++.+++.+. +..|||+.|++.++
T Consensus 148 ~~~------rg~~~~~~~~~~~~g~~~g~~~g~~l~~~~~~~~~~~~gWr~~f~~~~~ 199 (434)
T PRK15075 148 PGR------KGFYTSWQSASQQVAVVFAALLGYLLNQWLSPAQMAEWGWRIPFLIGCL 199 (434)
T ss_pred ccc------chHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHhccchHHHHHHHHH
Confidence 999 999999998888888888888777652 46799999987543
No 67
>PRK15034 nitrate/nitrite transport protein NarU; Provisional
Probab=99.86 E-value=1.7e-18 Score=184.83 Aligned_cols=189 Identities=9% Similarity=-0.057 Sum_probs=138.2
Q ss_pred ccccCCCc---hHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hhCCChHHHHHHHHHHHHHHHHHhhhhHHHhhcccchH
Q 007580 61 DLSKTGGW---IAALFIFGNEMAERMAYFGLSVNMVTFMFY-VMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRY 136 (597)
Q Consensus 61 ~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~-~~~~s~~~a~~~~~~~~~~~~~~~~~~G~lsD~~~GR~ 136 (597)
-|..+++. |.+++..+..++.... ....+.+.+++.+ ++|+|.++.+++.+.+.+++.++.++.|++.|| +|.|
T Consensus 23 ~w~~~~~~~a~r~l~~s~~~f~~~F~~-w~~~~~l~~~~~~~~~~ls~~q~g~l~ai~~l~~al~rip~G~l~Dr-~G~R 100 (462)
T PRK15034 23 FWENKGKHIARRNLWISVSCLLLAFCV-WMLFSAVTVNLNKIGFNFTTDQLFLLTALPSVSGALLRVPYSFMVPI-FGGR 100 (462)
T ss_pred HHhhcCchHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhhhhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCCh
Confidence 56665555 5555555444443333 4444555566655 899999999999999999999999999999999 8999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhccccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhhchhhhhhhhhhccC
Q 007580 137 WTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQF 216 (597)
Q Consensus 137 ~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~~ 216 (597)
+++.++.++..+.+++++++... +. +++..+++.|++.|++ ++..+.....++++|
T Consensus 101 ~v~~~~~ll~~i~~~~~~~a~~~----~~-------------------~s~~~lli~r~l~Gig-g~~f~~~~~~vs~wf 156 (462)
T PRK15034 101 RWTVFSTAILIIPCVWLGIAVQN----PN-------------------TPFGIFIVIALLCGFA-GANFASSMGNISFFF 156 (462)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcc----cC-------------------CCHHHHHHHHHHHHHH-HHhHHHHHHHHHHHC
Confidence 99999999998888888865210 00 3678999999999998 668888999999999
Q ss_pred CCCCchhhhhhhhHHHHHHHHHHHHHHHHHHHHHH-----hhh-------------ccchHHHHHHHHHHHHHHHHHHHH
Q 007580 217 DERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVY-----IQM-------------EHGWGSAFGALAIAMGISNMLFFI 278 (597)
Q Consensus 217 ~~~~~~~~~~R~~~~~~~~~~~~lg~~l~p~i~~~-----i~~-------------~~gw~~~f~i~~~~~~~~~~~~~~ 278 (597)
|+++ |+++++++....++|..+++.+... +.. ..+|+.++++..+..++..++.++
T Consensus 157 p~~~------rG~A~Gi~~g~G~~G~~l~~~l~p~~i~~~l~~~~G~~~~~~~~g~~~~~~~~~~~~~~~~iv~~i~~~~ 230 (462)
T PRK15034 157 PKAK------QGSALGINGGLGNLGVSVMQLVAPLVIFVPVFAFLGVNGVPQADGSVMSLANAAWIWVPLLAIATIAAWS 230 (462)
T ss_pred CHhH------hHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhccccccccccchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999 9999999865566666555444432 212 345777777777766665555555
Q ss_pred hcC
Q 007580 279 GTP 281 (597)
Q Consensus 279 ~~~ 281 (597)
..+
T Consensus 231 ~~~ 233 (462)
T PRK15034 231 GMN 233 (462)
T ss_pred hCC
Confidence 443
No 68
>KOG2532 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]
Probab=99.86 E-value=2.9e-20 Score=199.52 Aligned_cols=150 Identities=19% Similarity=0.226 Sum_probs=138.5
Q ss_pred hhCCChHHHHHHHHHHHHHHHHHhhhhHHHhhcccchHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCcccccccccCC
Q 007580 99 VMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGS 178 (597)
Q Consensus 99 ~~~~s~~~a~~~~~~~~~~~~~~~~~~G~lsD~~~GR~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~c~~~~~~~~~ 178 (597)
++++++.+-+++.+.+..|+.++++.+|+++|| +|-|+++.++.++.++++++..+++.
T Consensus 67 ~~~ws~~~k~~i~ss~~~G~i~~~iP~g~l~~k-~G~r~v~~~~~~~sa~~t~l~P~aa~-------------------- 125 (466)
T KOG2532|consen 67 EYDWSSTEKGLIFSSFFWGYILGQIPGGYLADK-FGARRVFFISGLISALLTLLTPLAAS-------------------- 125 (466)
T ss_pred eecCCHHHHHHHHHHHHHHHHHHHcCcHHHHHH-cCchHHHHHHHHHHHHHHHHHHHHHH--------------------
Confidence 578899999999999999999999999999999 89999999999999999999999865
Q ss_pred CCCccchhHHHHHHHHHHHHHhhhchhhhhhhhhhccCCCCCchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhc-cc
Q 007580 179 CEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQME-HG 257 (597)
Q Consensus 179 ~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~R~~~~~~~~~~~~lg~~l~p~i~~~i~~~-~g 257 (597)
.+...+++.|+++|++.|...|+...+.+.+.|+.| |+++.++.+.+..+|.+++.+++|++.+. .|
T Consensus 126 ------~~~~~~~~~R~lqGl~~g~~~pa~~~i~~~W~P~~E------rs~~~ail~~g~q~g~v~~mp~sg~lc~s~~G 193 (466)
T KOG2532|consen 126 ------IGFYLLLVLRFLQGLGQGVLFPAIGSILAKWAPPNE------RSTFIAILTAGSQLGTIITMPVSGLLCESSLG 193 (466)
T ss_pred ------hcchhhHHHHHHhHHHHhHHHhhhhceeeeECCHHH------HHHHHHHHHHHHHHHHHHHHHhHHHHhccCCC
Confidence 344578999999999999999999999999999999 99999999999999999999999999998 99
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhcC
Q 007580 258 WGSAFGALAIAMGISNMLFFIGTP 281 (597)
Q Consensus 258 w~~~f~i~~~~~~~~~~~~~~~~~ 281 (597)
|+++|++.+++.++..++++....
T Consensus 194 W~sifY~~g~~g~i~~~~w~~~~~ 217 (466)
T KOG2532|consen 194 WPSIFYVFGIVGLIWFILWFLFYS 217 (466)
T ss_pred CchHHHHHHHHHHHHHHHHHHHhc
Confidence 999999999988877777766544
No 69
>PRK10133 L-fucose transporter; Provisional
Probab=99.86 E-value=1.6e-18 Score=187.22 Aligned_cols=155 Identities=14% Similarity=-0.012 Sum_probs=127.8
Q ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHhhhhHHHhhcccchHHHHHHHHHH
Q 007580 66 GGWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTI 145 (597)
Q Consensus 66 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~lsD~~~GR~~~~~~~~~l 145 (597)
+....+..+.+..+...+........ .+.+++++|.+..+.++..+.+.++..++.++.|+++|| +|||+++.++.++
T Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~p~i~~~~~~s~~~~gl~~~~~~~g~~i~~~~~g~l~dr-~G~r~~l~~g~~~ 100 (438)
T PRK10133 23 SYIIPFALLCSLFFLWAVANNLNDIL-LPQFQQAFTLTNFQAGLIQSAFYFGYFIIPIPAGILMKK-LSYKAGIITGLFL 100 (438)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCcHHHHHHHHHH
Confidence 34456666666667777775555554 455699999999999999999999999999999999999 8999999999999
Q ss_pred HHHHHHHHHHhhhccccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhhchhhhhhhhhhccCCCCCchhhh
Q 007580 146 YLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKT 225 (597)
Q Consensus 146 ~~~g~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~ 225 (597)
+.++.+++..+... +++..++++|+++|+|.+...+...++++|..++++
T Consensus 101 ~~~~~~l~~~~~~a-------------------------~~~~~ll~~r~l~G~g~g~~~~~~~~~v~~~~~~~~----- 150 (438)
T PRK10133 101 YALGAALFWPAAEI-------------------------MNYTLFLVGLFIIAAGLGCLETAANPFVTVLGPESS----- 150 (438)
T ss_pred HHHHHHHHHHHHhc-------------------------CCHHHHHHHHHHHHHHHHHHHhhHHHHHHHhCChhh-----
Confidence 99999886432110 467889999999999999999999999999866665
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHhh
Q 007580 226 HLDRFFNFFYLSVTVGAIVAFTLVVYIQ 253 (597)
Q Consensus 226 ~R~~~~~~~~~~~~lg~~l~p~i~~~i~ 253 (597)
|...++++.....+|..+||.+++.+.
T Consensus 151 -~~~~~s~~~~~~~~G~~~g~~~g~~l~ 177 (438)
T PRK10133 151 -GHFRLNLAQTFNSFGAIIAVVFGQSLI 177 (438)
T ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 666788888888999999998887654
No 70
>TIGR00712 glpT glycerol-3-phosphate transporter. This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar.
Probab=99.86 E-value=2.7e-19 Score=193.43 Aligned_cols=181 Identities=13% Similarity=0.074 Sum_probs=139.8
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHhhhhHHHhhcccchHHHHHHHHHHHH
Q 007580 68 WIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYL 147 (597)
Q Consensus 68 ~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~lsD~~~GR~~~~~~~~~l~~ 147 (597)
|+.++...+...+.......+.. ..+++++ +|++..+.++..+.+.++..++.++.|+++|| +|||+++.++.++..
T Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~~-~~p~~~~-~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr-~g~~~~~~~~~~~~~ 102 (438)
T TIGR00712 26 WQVFLGIFFGYAAYYLVRKNFAL-AMPYLVE-QGFSKGELGFALSAISIAYGFSKFIMGSVSDR-SNPRVFLPAGLILSA 102 (438)
T ss_pred HHHHHHHHHHHHHHHHHhccHHh-hhHHHHH-cCCCHhHhHHHHHHHHHHHHHhhhccchhhhc-cCCceehHHHHHHHH
Confidence 44444444444444444333333 3456665 59999999999999999999999999999999 899999999988888
Q ss_pred HHHHHHHHhhhccccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhhchhhhhhhhhhccCCCCCchhhhhh
Q 007580 148 AGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHL 227 (597)
Q Consensus 148 ~g~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~R 227 (597)
++..++...... . .+...+++.|++.|++.+...+.....+.|++|+++ |
T Consensus 103 ~~~~~~~~~~~~-----~-------------------~~~~~l~~~~~l~g~~~g~~~~~~~~~i~~~~~~~~------r 152 (438)
T TIGR00712 103 AVMLLMGFVPWA-----T-------------------SSIAIMFVLLFLNGWFQGMGWPPCGRTMVHWWSQSE------R 152 (438)
T ss_pred HHHHHHhccccc-----c-------------------chHHHHHHHHHHHHHHhhcchHHHHHHHHHhcCccc------c
Confidence 887776653110 0 245677888999999999999989999999999999 9
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhh-hccchHHHHHHHHHHHHHHHHHHHHhcC
Q 007580 228 DRFFNFFYLSVTVGAIVAFTLVVYIQ-MEHGWGSAFGALAIAMGISNMLFFIGTP 281 (597)
Q Consensus 228 ~~~~~~~~~~~~lg~~l~p~i~~~i~-~~~gw~~~f~i~~~~~~~~~~~~~~~~~ 281 (597)
++++++++...++|..++|.+.+.+. .+.+||+.|++.++..++..++.++..+
T Consensus 153 g~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~w~~~f~~~~~~~~i~~~~~~~~~~ 207 (438)
T TIGR00712 153 GTIVSIWNCAHNIGGGIPPLLVLLGMAWFNDWHAALYFPAICAIIVALFAFAMMR 207 (438)
T ss_pred hhHHHHHHHHHHhHhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhcc
Confidence 99999999999999999988877644 4578999999988776665544444444
No 71
>PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily. EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function [].
Probab=99.86 E-value=6.6e-18 Score=184.37 Aligned_cols=340 Identities=14% Similarity=0.081 Sum_probs=224.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHhhhhHHHhhcccchHHHHHHHHHHHHHH
Q 007580 70 AALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAG 149 (597)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~lsD~~~GR~~~~~~~~~l~~~g 149 (597)
.+..++...++.+++.......++-++. ++.-|+...+++.....+...+..+++|.++|| +.|||+++.+.++..+.
T Consensus 11 ~Fr~lw~a~~iS~lG~~~~~va~~wlv~-~lt~S~~~valv~~a~~LP~~Llsl~aG~laDr-~drrrili~~~~~~~~~ 88 (524)
T PF05977_consen 11 NFRRLWIAQLISNLGDWMQTVALAWLVT-QLTGSPLMVALVQAASTLPILLLSLFAGALADR-FDRRRILILSQLLRALV 88 (524)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhCCHHHHHHHHHHHHHHHHHHHHHHHHHhhc-ccchHHHHHHHHHHHHH
Confidence 3455666667777776555555554444 566788889999999999999999999999999 89999999999887776
Q ss_pred HHHHHHhhhccccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhhchhhhhhhhhhccCCCCCchhhhhhhh
Q 007580 150 LTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDR 229 (597)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~R~~ 229 (597)
.+.+++...... .+.+.+++.-++.|++.+...|+..+++.|+.|+++ ...
T Consensus 89 ~~~L~~l~~~~~-----------------------~~~~~Ll~~~fl~g~~~a~~~PA~~A~ip~lV~~~~------L~~ 139 (524)
T PF05977_consen 89 ALLLAVLAFFGL-----------------------LSPWLLLILTFLLGIGSAFFNPAWQAIIPELVPKED------LPA 139 (524)
T ss_pred HHHHHHHHHhCc-----------------------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHhh------HHH
Confidence 665555432111 356778888899999999999999999999999998 999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHhcCcccccCCCCCchhhHHHHHHHHHHhhhc
Q 007580 230 FFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGTPLYRHRLPGGSPLTRVAQVLVAAFRKRHA 309 (597)
Q Consensus 230 ~~~~~~~~~~lg~~l~p~i~~~i~~~~gw~~~f~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 309 (597)
+.++.....|+.-.+||.++|.+....|-.+.|.+.++..++.++++...++..+.+ ..+..++.+-+...+|
T Consensus 140 A~al~s~~~niar~iGPalgG~Lva~~G~~~~f~inalsfl~~i~~l~~~~~~~~~~---~~~~e~~~~~l~~G~r---- 212 (524)
T PF05977_consen 140 ANALNSISFNIARIIGPALGGILVAFFGAAAAFLINALSFLISILALLRWKPPPPPS---SLPRERFFSALREGLR---- 212 (524)
T ss_pred HHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccc---ccchhhhhhhHHHHHH----
Confidence 999999999999999999999999888999999998887666554443333221111 1111111111111110
Q ss_pred ccCccccccccccCCCcccccCCcccccCCcchhhHHHhhhhhcccCCCCCCccccchhhhhhhHh-HhhhhhHHHHHHH
Q 007580 310 AFSSSELIGLYEVPGKHSAIKGSGKIAHTDDFRCLDKAALELKEDVINPSPWKLCTVTQVEEVKTL-VRLVPIPACTIML 388 (597)
Q Consensus 310 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~~~ 388 (597)
.+.+++ ..+.+ .+...+.+. .
T Consensus 213 ------------------------yv~~~~-------------------------------~l~~~l~~~~~~~l~---~ 234 (524)
T PF05977_consen 213 ------------------------YVRSSP-------------------------------PLRSVLLRSFLFNLF---A 234 (524)
T ss_pred ------------------------HHhcch-------------------------------HHHHHHHHHHHHHHh---h
Confidence 000000 00110 000000000 0
Q ss_pred HHHHhcchhhHHHHHhhhcccC--------------------CCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHhHHhh
Q 007580 389 NVILTEFLTLSVQQAYTMNTHM--------------------GHPRGASQLQRVGIGLAVSILSVIWAGIFERYRRNYAI 448 (597)
Q Consensus 389 ~~~~~~~~~~~~~~~~~~~~~~--------------------~~~~~~~~~~~i~~G~~l~~~~~~~~~~~~~~~~~~~~ 448 (597)
...... ...+..+..+.+... +.+++.+..+.+..+.++.+++++.+++.
T Consensus 235 ~a~~aL-lPl~a~~~l~~~a~~yGll~a~~gvGai~Gal~~~~l~~~~~~~~lv~~~~~~~a~~~~~lal~--------- 304 (524)
T PF05977_consen 235 SAVWAL-LPLFARDVLGGGASGYGLLLAAFGVGAILGALLLPRLRRRLSSRRLVLLASLLFALALLLLALS--------- 304 (524)
T ss_pred hHHHHh-hhHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHHhhcccCcchhhHHHHHHHHHHHHHHhcc---------
Confidence 000000 011111000000000 22233334444555555555555555443
Q ss_pred hcCccccccCcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Q 007580 449 SHGYEFSFLTAMPDLSAYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPDAMKSIGSAYAALAGGLGCFAASILNSIIKSVT 528 (597)
Q Consensus 449 ~~g~~~~~~~~~~~~s~~~l~~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~gl~~~~~~lg~~lg~~l~~~v~~~~ 528 (597)
.+.+..++.+++.|++.........+.+...+|+++||+++|++.+....+..+|+++.|.+.+..
T Consensus 305 --------------~~~~~~~~~l~l~G~~~~~~~~~~~t~~Q~~~P~~~~GRv~si~~~~~~g~~~lGsll~G~la~~~ 370 (524)
T PF05977_consen 305 --------------PSFWLALIALFLAGAAWIIANSSLNTLVQLSVPDWVRGRVFSIYQMVFFGGMPLGSLLWGFLADHF 370 (524)
T ss_pred --------------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 355566777888899999999999999999999999999999999999999999999999988766
Q ss_pred C
Q 007580 529 G 529 (597)
Q Consensus 529 g 529 (597)
|
T Consensus 371 g 371 (524)
T PF05977_consen 371 G 371 (524)
T ss_pred C
Confidence 5
No 72
>PRK11102 bicyclomycin/multidrug efflux system; Provisional
Probab=99.85 E-value=3e-18 Score=181.09 Aligned_cols=160 Identities=18% Similarity=0.211 Sum_probs=138.9
Q ss_pred HHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHhhhhHHHhhcccchHHHHHHHHHHHHHHHHHHHHhhhccccCCC
Q 007580 86 FGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPN 165 (597)
Q Consensus 86 ~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~lsD~~~GR~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~ 165 (597)
....+.++.+. +++|++..+.++..+.+.++..++.+++|+++|| +|||+++.++.++..++..++..+
T Consensus 8 ~~~~p~~~~~~-~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~-~g~~~~~~~~~~~~~i~~~~~~~~--------- 76 (377)
T PRK11102 8 DMYLPALPVIA-ADFGVSAGSVQMTLSAYILGFAIGQLFYGPMADS-FGRKPVILGGTLVFALAAVACALA--------- 76 (377)
T ss_pred HHHhccHHHHH-HHhCCCHHHHHHHHHHHHHHHHHHHHhhchHHhh-cCChHHHHHHHHHHHHHHHHHHHH---------
Confidence 34445655554 6799999999999999999999999999999999 899999999999999998888876
Q ss_pred CCcccccccccCCCCCccchhHHHHHHHHHHHHHhhhchhhhhhhhhhccCCCCCchhhhhhhhHHHHHHHHHHHHHHHH
Q 007580 166 QDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVA 245 (597)
Q Consensus 166 ~~~c~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~R~~~~~~~~~~~~lg~~l~ 245 (597)
.+...+++.|++.|++.+...+...+++.|.+|+++ |++.+++++....+|..++
T Consensus 77 -------------------~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~g~~~~ 131 (377)
T PRK11102 77 -------------------QTIDQLIYMRFLHGLAAAAASVVINALMRDMFPKEE------FSRMMSFVTLVMTIAPLLA 131 (377)
T ss_pred -------------------ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHH------HHHHHHHHHHHHHHHHHHH
Confidence 466788899999999999999999999999999998 9999999999999999999
Q ss_pred HHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHhcC
Q 007580 246 FTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGTP 281 (597)
Q Consensus 246 p~i~~~i~~~~gw~~~f~i~~~~~~~~~~~~~~~~~ 281 (597)
|.+++++.+..+|++.|++.++..++..++.....+
T Consensus 132 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (377)
T PRK11102 132 PIIGGWLLVWFSWHAIFWVLALAAILAAALVFFFIP 167 (377)
T ss_pred HHHHHHHHHHcChHHHHHHHHHHHHHHHHHHHHhCC
Confidence 999999999899999999887766655544444333
No 73
>PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated
Probab=99.85 E-value=1.5e-18 Score=209.48 Aligned_cols=154 Identities=15% Similarity=0.105 Sum_probs=126.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChH--HHHHHHHHHHHHHHHHhhhhHHHhhcccchHHHHHHHHHHHH
Q 007580 70 AALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFA--DSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYL 147 (597)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~--~a~~~~~~~~~~~~~~~~~~G~lsD~~~GR~~~~~~~~~l~~ 147 (597)
.+...++..++..+...+....+..++...++.+.. ..+++.+++.++..++.+++|+++|| +|||++++++.++.+
T Consensus 10 ~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~G~l~Dr-~grk~~l~~~~~~~~ 88 (1146)
T PRK08633 10 GFLPLLLTQFLNAFNDLGHKILIQNTLIKAYDGSEQVILTAIVNALFLLPFLLLSSPAGFLADK-FSKNRVIRIVKLFEV 88 (1146)
T ss_pred hhHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHHHHHHhhhHhhhccc-ccHHHHHHHHHHHHH
Confidence 445555666666666555556666677777776543 46788899999999999999999999 899999999988776
Q ss_pred HHHHHHHHhhhccccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhhchhhhhhhhhhccCCCCCchhhhhh
Q 007580 148 AGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHL 227 (597)
Q Consensus 148 ~g~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~R 227 (597)
++.+++.++... .++..++++|+++|++.+...+...++++|++|+++ |
T Consensus 89 ~~~~~~~~~~~~-------------------------~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~------r 137 (1146)
T PRK08633 89 GLTLLIVLAYYL-------------------------GWFWLAFAVTFLLGAQSAIYSPAKYGIIPELVGKEN------L 137 (1146)
T ss_pred HHHHHHHHHHHH-------------------------ccHHHHHHHHHHHHHHHHhhchHHHhhhHHhcCccc------c
Confidence 666655544210 357889999999999999999999999999999999 9
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 007580 228 DRFFNFFYLSVTVGAIVAFTLVVYIQME 255 (597)
Q Consensus 228 ~~~~~~~~~~~~lg~~l~p~i~~~i~~~ 255 (597)
+++++++..+.++|.++||.+++++.+.
T Consensus 138 ~~~~~~~~~~~~ig~~lg~~l~~~l~~~ 165 (1146)
T PRK08633 138 SRANGLLEAFTIVAILAGTALFSFLFES 165 (1146)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999999998775
No 74
>TIGR00881 2A0104 phosphoglycerate transporter family protein.
Probab=99.85 E-value=2.4e-19 Score=188.41 Aligned_cols=155 Identities=13% Similarity=0.050 Sum_probs=136.0
Q ss_pred HHHHHHHhhCCChHHHHHHHHHHHHHHHHHhhhhHHHhhcccchHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCcccc
Q 007580 92 MVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDR 171 (597)
Q Consensus 92 l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~lsD~~~GR~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~c~~ 171 (597)
..+++.+++|++..+.+++.+.+.++..++.+++|+++|| +|||+++.++.++..++.++++++
T Consensus 17 ~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr-~g~r~~~~~~~~~~~~~~~~~~~~--------------- 80 (379)
T TIGR00881 17 AMPYLVEEIGLSKTDLGLLLSSFSIAYGISKFVMGSVSDR-SNPRVFLPIGLILCAIVNLFFGFS--------------- 80 (379)
T ss_pred hhHHHHHHhCCCHhHHHHHHHHHHHHHHhhhhhhhHHHHh-hCCeehhHHHHHHHHHHHHHHHHh---------------
Confidence 3467889999999999999999999999999999999999 899999999999999999888876
Q ss_pred cccccCCCCCccchhHHHHHHHHHHHHHhhhchhhhhhhhhhccCCCCCchhhhhhhhHHHHHHHHHHHHHHHHH-HHHH
Q 007580 172 ISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAF-TLVV 250 (597)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~R~~~~~~~~~~~~lg~~l~p-~i~~ 250 (597)
.+...+++.|++.|++.+...+...++++|++|+++ |++.+++++...++|..++| .+++
T Consensus 81 -------------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~------r~~~~~~~~~~~~~g~~~~~~~~~~ 141 (379)
T TIGR00881 81 -------------TSLWVMAALWALNGIFQGMGWPPCGRTVTKWFSRSE------RGTWVSFWNCSHNVGGGLLPPLVLF 141 (379)
T ss_pred -------------hhHHHHHHHHHHHHhhccccCCchHHHHHHhcCHhh------heeeEeehhccchhHHHHHHHHHHH
Confidence 467889999999999999999999999999999998 99999999999999999999 5777
Q ss_pred HhhhccchHHHHHHHHHHHHHHHHHHHHhcC
Q 007580 251 YIQMEHGWGSAFGALAIAMGISNMLFFIGTP 281 (597)
Q Consensus 251 ~i~~~~gw~~~f~i~~~~~~~~~~~~~~~~~ 281 (597)
.+.+..+|++.|++.+++.++..++.+...+
T Consensus 142 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (379)
T TIGR00881 142 GIAELYSWHWVFIVPGIIAIIVSLICFLLLR 172 (379)
T ss_pred HHHhcCCchhHHHHHHHHHHHHHHHHheeeC
Confidence 7777889999998887766555444444333
No 75
>KOG1330 consensus Sugar transporter/spinster transmembrane protein [Carbohydrate transport and metabolism]
Probab=99.84 E-value=2.4e-20 Score=191.82 Aligned_cols=183 Identities=17% Similarity=0.196 Sum_probs=165.1
Q ss_pred cCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHhhhhHHHhhcccchHHHHHHHH
Q 007580 64 KTGGWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFT 143 (597)
Q Consensus 64 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~lsD~~~GR~~~~~~~~ 143 (597)
.+..++.+.++++...++++..|.+... -.-+++.+|++++..+++.+.+.+...++.|+.|+|+|| +.|++++.+|.
T Consensus 28 ~~~~~~~l~il~~vnlmny~Dr~~iagv-~~~v~~~fni~~s~~Gll~~vf~v~~~i~sPl~gyLadr-yNR~~v~~vG~ 105 (493)
T KOG1330|consen 28 MKSPTLTLVILCLVNLMNYADRYTIAGV-LKEVQTYFNISDSELGLLQTVFIVVFMIASPLFGYLADR-YNRKRVIAVGI 105 (493)
T ss_pred cccchHHHHHHHHHHHHHHhhhhhhhhh-hHHHHHhcCCCchhccchhHHHHHHHHHHHHHHHHHHhh-cCcceEEeeHH
Confidence 3445667888999999999999988764 456788899999999999999999999999999999999 79999999999
Q ss_pred HHHHHHHHHHHHhhhccccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhhchhhhhhhhhhccCCCCCchh
Q 007580 144 TIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDY 223 (597)
Q Consensus 144 ~l~~~g~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~ 223 (597)
+++.++.+.++++ ..++++++.|.+.|+|.+...|..+++++|.||+..
T Consensus 106 ~iW~~Av~~~~fs----------------------------~~Fwq~~l~R~~vGiGeAs~~~ia~s~IaD~f~~~~--- 154 (493)
T KOG1330|consen 106 FIWTLAVFASGFS----------------------------NHFWQVLLCRGFVGIGEASYSPIAPSLIADSFPDDK--- 154 (493)
T ss_pred HHHHHHHHHHHHH----------------------------HHHHHHHHHHHHhccchhhhcccchhHhhhcCcchh---
Confidence 9999999999987 578999999999999999999999999999999999
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhccc-hHHHHHHHHHHHHHHHHHHHHhcCc
Q 007580 224 KTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHG-WGSAFGALAIAMGISNMLFFIGTPL 282 (597)
Q Consensus 224 ~~~R~~~~~~~~~~~~lg~~l~p~i~~~i~~~~g-w~~~f~i~~~~~~~~~~~~~~~~~~ 282 (597)
|++.++++|++..+|.++|.++++++.+..+ |||+|.+.+++.++..++.++..++
T Consensus 155 ---Rs~~~~ify~~ipvGsglG~vvgs~va~~~~~Wr~af~~~avl~vi~~~L~~~f~~e 211 (493)
T KOG1330|consen 155 ---RSRVLGIFYFAIPVGSGLGYVVGSVVASLTFWWRWAFRGSAVLGVIVGLLVFLFVRE 211 (493)
T ss_pred ---hhHHHHHhhhhcccccceeEEeeeeeccCccceEEEEEeehHHHHHHHHHHHhhccC
Confidence 9999999999999999999999999988776 9999999998887766665555544
No 76
>TIGR00882 2A0105 oligosaccharide:H+ symporter.
Probab=99.84 E-value=3.2e-18 Score=182.47 Aligned_cols=178 Identities=10% Similarity=-0.101 Sum_probs=132.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHhhhhHHHhhcccchHHHHHHHHHHHHHH
Q 007580 70 AALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAG 149 (597)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~lsD~~~GR~~~~~~~~~l~~~g 149 (597)
.+|......++...+...+.++++.|+++++|.+..+.+++.+.+.++..++.++.|+++|| +|||+.++.+.+...++
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~l~~~i~~~~~G~l~Dr-~grr~~~~~~~~~~~~~ 81 (396)
T TIGR00882 3 NFWMFGLFFFLYFFIMSAYFPFFPIWLHDVNGLSKTDTGIVFSCISLFSILFQPLFGLISDK-LGLKKHLLWIISGLLVL 81 (396)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCcHHHHHHHHHHHHHH
Confidence 46677778888888888889999999999999999999999999999999999999999999 89999998877666554
Q ss_pred HHHHHHhhhccccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhhchhhhhhhhhhccCCCCCchhhhhhhh
Q 007580 150 LTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDR 229 (597)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~R~~ 229 (597)
...+......+... ......+++.+++.|++.+...+....+..|.-+ + ++.
T Consensus 82 ~~~~~~~~~~~~~~--------------------~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~--~------~~~ 133 (396)
T TIGR00882 82 FAPFFIYVFGPLLQ--------------------SNILVGAIVGGLYLGFVFSAGAGAIEAYIEKVSR--N------SNF 133 (396)
T ss_pred HHHHHHHHhhhHHH--------------------HHHHHHHHHHHHHHHHHhccchhhHHHHHHHhhh--h------ccc
Confidence 43322110000000 0123345667788888888888888777766422 2 334
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHH
Q 007580 230 FFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFF 277 (597)
Q Consensus 230 ~~~~~~~~~~lg~~l~p~i~~~i~~~~gw~~~f~i~~~~~~~~~~~~~ 277 (597)
.++......++|..++|.+++.+.+ .+|++.|++.+++.++..++.+
T Consensus 134 ~~g~~~~~~~~g~~~g~~~~g~l~~-~~~~~~f~~~~~~~~~~~~~~~ 180 (396)
T TIGR00882 134 EYGKARMFGCVGWALCASIAGILFS-IDPQIVFWLGSGFALILMLLLM 180 (396)
T ss_pred ccchhhhhcccHHHHHHHHHhhhhc-cCchHHHHHHHHHHHHHHHHHH
Confidence 5566667778999999999998865 5999999988776665544433
No 77
>PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional
Probab=99.84 E-value=2.4e-18 Score=207.49 Aligned_cols=145 Identities=14% Similarity=0.043 Sum_probs=111.5
Q ss_pred HHHhhCCCh-HHHHHHHHHHHHHHHHHhhhhHHHhhcccchHHHHHHHHHH--HHHHHHHHHHhhhccccCCCCCccccc
Q 007580 96 MFYVMHKSF-ADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTI--YLAGLTGITLCATMKVFMPNQDNCDRI 172 (597)
Q Consensus 96 l~~~~~~s~-~~a~~~~~~~~~~~~~~~~~~G~lsD~~~GR~~~~~~~~~l--~~~g~~~~~~~~~~~~~~~~~~~c~~~ 172 (597)
++...+.+. ...++..+.+.+...++.+++|+++|| +|||+++.....+ ......+..+..
T Consensus 42 ~~~~~~~~~~~~~~l~~~~~~l~~~l~~~~~G~laDr-~~rk~~~~~~~~~~~~~~~~~~~~~~~--------------- 105 (1140)
T PRK06814 42 LSGALGAYNNALVTLAGAVFILPFFIFSALAGQLADK-YDKAKLAKILKFAEIGIAALAIYGFHL--------------- 105 (1140)
T ss_pred hccccccchHHHHHHHHHHHHHHHHHHhhhHHhhhhh-ccHHHHHHHHHHHHHHHHHHHHHHHHH---------------
Confidence 333344433 346778888999999999999999999 8999976442222 222221222110
Q ss_pred ccccCCCCCccchhHHHHHHHHHHHHHhhhchhhhhhhhhhccCCCCCchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHh
Q 007580 173 SQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYI 252 (597)
Q Consensus 173 ~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~R~~~~~~~~~~~~lg~~l~p~i~~~i 252 (597)
.+++.++++|+++|++.+...|...+++.|++++++ |+.++++...+.++|.++||+++|++
T Consensus 106 ------------~s~~~l~~~~~l~gi~~a~~~p~~~a~l~~~~~~~~------~~~a~~~~~~~~~ig~~igp~l~g~l 167 (1140)
T PRK06814 106 ------------NSVPLLFAALFLMGIHSALFGPIKYSILPDHLNKDE------LLGANALVEAGTFIAILLGTIIGGLA 167 (1140)
T ss_pred ------------hhHHHHHHHHHHHHHHHHhhchHHHHhhHhhcCccc------cchhhHHHHHHHHHHHHHHHHHHHHH
Confidence 367889999999999999999999999999999999 99999999999999999999999999
Q ss_pred hhccchHHHHHHHHHHHHHHHH
Q 007580 253 QMEHGWGSAFGALAIAMGISNM 274 (597)
Q Consensus 253 ~~~~gw~~~f~i~~~~~~~~~~ 274 (597)
.+..||++.|++.+++.+++++
T Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~ 189 (1140)
T PRK06814 168 TISGNFVILVALLMGIAVLGWL 189 (1140)
T ss_pred HhccccHHHHHHHHHHHHHHHH
Confidence 9999999998444444443333
No 78
>PRK11128 putative 3-phenylpropionic acid transporter; Provisional
Probab=99.83 E-value=1.5e-17 Score=176.41 Aligned_cols=155 Identities=8% Similarity=-0.024 Sum_probs=117.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHhhhhHHHhhcccchH----HHHHHHHHHHHHHHHHH
Q 007580 78 EMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRY----WTIAIFTTIYLAGLTGI 153 (597)
Q Consensus 78 ~~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~lsD~~~GR~----~~~~~~~~l~~~g~~~~ 153 (597)
.++..++...+.+.++.|++ ++|.|..+.++.++.+.+...++.+++|+++|| +||+ +.+.+...+. ....+
T Consensus 13 ~~~~~~~~g~~~p~l~~~l~-~~g~s~~~iG~~~~~~~l~~~l~~~~~g~l~dr-~g~~~~~~~~~~~~~~~~--~~~~~ 88 (382)
T PRK11128 13 YFGYFFAYGVFLPFWSVWLK-GQGYTPETIGLLLGAGLVARFLGSLLIAPRVKD-PSQLIPALRLLALLTLLF--AVAFW 88 (382)
T ss_pred HHHHHHHHHHHhhhHHHHHH-hcCCCHHHHHHHHHHHHHHHHhhhHHHHHHHhh-hcchHHHHHHHHHHHHHH--HHHHH
Confidence 34445566667788888984 589999999999999999999999999999999 8984 3322222211 11111
Q ss_pred HHhhhccccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhhchhhhhhhhhhccCCCCCchhhhhhhhHHHH
Q 007580 154 TLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNF 233 (597)
Q Consensus 154 ~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~R~~~~~~ 233 (597)
..+ ++.+.+++.|++.|++.+...|...++..|+ .++ |++.++.
T Consensus 89 ~~~----------------------------~~~~~l~i~~~l~g~~~~~~~~~~~a~~~~~--~~~------~~~a~~~ 132 (382)
T PRK11128 89 FGA----------------------------HSFWLLFVAIGLFNLFFSPLVPLTDALANTW--QKQ------IGLDYGK 132 (382)
T ss_pred Hhc----------------------------ccHHHHHHHHHHHHHHHcccccHHHHHHHHH--Hhh------ccCCcch
Confidence 111 4677888899999999999999888887776 233 6666777
Q ss_pred HHHHHHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHH
Q 007580 234 FYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGIS 272 (597)
Q Consensus 234 ~~~~~~lg~~l~p~i~~~i~~~~gw~~~f~i~~~~~~~~ 272 (597)
.....++|..+||.+++++.+++|||..|++.++..++.
T Consensus 133 ~~~~~~lg~~igp~lgg~l~~~~g~~~~f~~~~~~~~~~ 171 (382)
T PRK11128 133 VRLWGSIAFVIGSALTGKLVSWFGEQAILWILTAGVASM 171 (382)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcChhHHHHHHHHHHHHH
Confidence 777778999999999999999999999998777644443
No 79
>PRK11010 ampG muropeptide transporter; Validated
Probab=99.83 E-value=3.8e-17 Score=179.01 Aligned_cols=181 Identities=12% Similarity=0.098 Sum_probs=138.1
Q ss_pred CccccccCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHhhhhHHHhhccc----
Q 007580 58 PIADLSKTGGWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYL---- 133 (597)
Q Consensus 58 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~lsD~~~---- 133 (597)
|. +|..+++ .+.+++..+...+..+.....++.++. +.|.+..+.+.. +..... .++.+++|+++|| +
T Consensus 5 ~l-~~~~~~~---~~~~~~l~~~~gl~~~~~~~~l~~~l~-~~g~~~~~ig~~-~~~~~~-~~~~~l~gpl~Dr-~~~~~ 76 (491)
T PRK11010 5 YL-RIFQQPN---SAILLILGFASGLPLALTSGTLQAWMT-VENIDLKTIGFF-SLVGQA-YVFKFLWSPLMDR-YTPPF 76 (491)
T ss_pred HH-HHHcccH---HHHHHHHHHHHHHHHHHHHHHHHHHHH-hCCCCHHHHHHH-HHHHHH-HHHHHHHHHHHHc-ccccC
Confidence 55 5554333 455566666667776667777777765 469998888875 333333 3688999999999 8
Q ss_pred -chHHH-HHHHHHHHHHHHHHHHHhhhccccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhhchhhhhhhh
Q 007580 134 -GRYWT-IAIFTTIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSF 211 (597)
Q Consensus 134 -GR~~~-~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~ 211 (597)
||||. +.++.++..++...+++.. |. .+...+.+.+++.+++.+...+...++
T Consensus 77 ~Grrr~~ll~~~i~~~~~~~~~a~~~------~~-------------------~~l~~l~~~~~l~~~~~a~~~i~~~a~ 131 (491)
T PRK11010 77 LGRRRGWLLATQLLLLVAIAAMGFLE------PG-------------------TQLRWLAALAVVIAFCSASQDIVFDAW 131 (491)
T ss_pred CCCchHHHHHHHHHHHHHHHHHHHcC------Cc-------------------chHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99986 5566666666766666541 11 356788888999999999999999999
Q ss_pred hhccCCCCCchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhh-ccchHHHHHHHHHHHHHHHHHHH
Q 007580 212 GADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQM-EHGWGSAFGALAIAMGISNMLFF 277 (597)
Q Consensus 212 ~ad~~~~~~~~~~~~R~~~~~~~~~~~~lg~~l~p~i~~~i~~-~~gw~~~f~i~~~~~~~~~~~~~ 277 (597)
..|++|+++ |+++.++...+..+|..+++.+++++.+ ..|||+.|++.++..++..+..+
T Consensus 132 ~~~~~~~~~------rg~~~~i~~~g~~lG~llg~~l~~~l~~~~~GWr~~f~i~a~l~ll~~l~~~ 192 (491)
T PRK11010 132 KTDVLPAEE------RGAGAAISVLGYRLAMLVSGGLALWLADRYLGWQGMYWLMAALLIPCIIATL 192 (491)
T ss_pred HHHhcChhh------hHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHHHH
Confidence 999999998 9999999999999999999999999988 57999999998876655544433
No 80
>TIGR00889 2A0110 nucleoside transporter. This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli.
Probab=99.82 E-value=9.7e-17 Score=172.29 Aligned_cols=381 Identities=12% Similarity=0.033 Sum_probs=211.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHhhhhHHHhhcccch-HHHHHHHHHHHHHHHH
Q 007580 73 FIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGR-YWTIAIFTTIYLAGLT 151 (597)
Q Consensus 73 ~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~lsD~~~GR-~~~~~~~~~l~~~g~~ 151 (597)
-+.+..|+....+-...+++++|+++++|++..+.+++.+.+.++..++++++|+++|| +|| |+++.++.++..++..
T Consensus 6 ~~~~~~~~~~~~~~~~~~~l~~~l~~~~g~s~~~iGl~~a~~~~~~~i~~~~~g~l~dr-~g~~r~~~~~~~~~~~~~~~ 84 (418)
T TIGR00889 6 KLKFMSFLQWFIWGSWLVTLGSYMSKTLHFSGAEIGWVYSSTGIAAILMPILVGIIADK-WLSAQKVYAVCHFAGALLLF 84 (418)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hcccHHHHHHHHHHHHHHHH
Confidence 35566677777766667999999999999999999999999999999999999999999 765 7788888777767666
Q ss_pred HHHHhhhccccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhhchhhhhhhhhhcc--------CCCCCchh
Q 007580 152 GITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQ--------FDERSKDY 223 (597)
Q Consensus 152 ~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~--------~~~~~~~~ 223 (597)
++.+. .+...+++.|.+.+++.+...+...+...+. .....
T Consensus 85 ~~~~~----------------------------~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~g~~~~~~~~--- 133 (418)
T TIGR00889 85 FAAQV----------------------------TTPAGMFPVLLANSLAYMPTIALTNSISYANLPQAGLDVVTDFP--- 133 (418)
T ss_pred HHHHh----------------------------cCHHHHHHHHHHHHHHHccHHHHHHHHHHHHHhhcCCCchhcCC---
Confidence 66654 3566777888888888877777665543222 21112
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHhcCcccccCCCC-CchhhHHHH-HH
Q 007580 224 KTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGTPLYRHRLPGG-SPLTRVAQV-LV 301 (597)
Q Consensus 224 ~~~R~~~~~~~~~~~~lg~~l~p~i~~~i~~~~gw~~~f~i~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-~~ 301 (597)
|.+.++ .+|.+++|.+++.+.....|+ +|++.+++.++..++ .+..++.++.+++. ....+..+. ..
T Consensus 134 ---~~r~~G------~lG~~ig~~l~g~l~~~~~~~-~f~~~~~~~~~~~~~-~~~~~e~~~~~~~~~~~~~~~~~~~~~ 202 (418)
T TIGR00889 134 ---PIRVMG------TIGFIAAMWAVSLLDIELSNI-QLYITAGSSALLGVF-ALTLPDIPVAKSTAKMSIKVMLGLDAF 202 (418)
T ss_pred ---Ceeeeh------hHHHHHHHHHHHHhcccchhH-HHHHHHHHHHHHHHH-HhcCCCCCCCccccccCHHHHhhhhHH
Confidence 444444 378888899988884433454 455555554444433 23333321111100 000000000 00
Q ss_pred HHHHhhhcccCccccccccccCCCcccccCCcccccCCcchhhHHHhhhhhcccCCCCCCccccchhhhhhhH-------
Q 007580 302 AAFRKRHAAFSSSELIGLYEVPGKHSAIKGSGKIAHTDDFRCLDKAALELKEDVINPSPWKLCTVTQVEEVKT------- 374 (597)
Q Consensus 302 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~------- 374 (597)
...|++ .+..+-...+...... .....+.....++...
T Consensus 203 ~~~k~~--------------------------------~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~g~~~~~~~~ 247 (418)
T TIGR00889 203 ILFKNK--------------------------------RMAIFFFFSMLLGAPL---QITNIFGNGFLHEFGRNPEFADS 247 (418)
T ss_pred HHhcCC--------------------------------CeeeHHHHHHHHHhHH---HHHHHhHHHHHHHhcccccccch
Confidence 000000 0000000000000000 0000000000000000
Q ss_pred -hHhhhhhHHHHHHHHHHHhcchhhHHHHHhhhcccCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhcCcc
Q 007580 375 -LVRLVPIPACTIMLNVILTEFLTLSVQQAYTMNTHMGHPRGASQLQRVGIGLAVSILSVIWAGIFERYRRNYAISHGYE 453 (597)
Q Consensus 375 -~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~G~~l~~~~~~~~~~~~~~~~~~~~~~g~~ 453 (597)
...................+. ..+ +..++++.++.+.++.++.++++.+.....
T Consensus 248 ~~~~~~g~~~~~~~i~~i~~~~-----~~g-------~l~dr~g~r~~l~~~~~~~~v~~~l~~~~~------------- 302 (418)
T TIGR00889 248 FVVKNASIWMSLSQFSEIFFIL-----TIP-------FFLKRFGIKKVMLLSLVAWALRFGFFAYGD------------- 302 (418)
T ss_pred hhhhhHHHHHHHHHHHHHHHHH-----HHH-------HHHHHhCcHHHHHHHHHHHHHHHHHHHHcC-------------
Confidence 000000000000000000000 000 111223334445555555544443333210
Q ss_pred ccccCcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHH-HHHHHHHHHHHHHHHHhhhccCCCC
Q 007580 454 FSFLTAMPDLSAYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPDAMKSIGSAYAA-LAGGLGCFAASILNSIIKSVTGNPK 532 (597)
Q Consensus 454 ~~~~~~~~~~s~~~l~~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~gl~~-~~~~lg~~lg~~l~~~v~~~~g~~~ 532 (597)
... .+...++...++.++++++..+....++.+.+|++.|++++|+.+ ...++|..+|+.+.+.+.+..| .
T Consensus 303 -----~~~-~~~~~l~l~~~l~g~~~~~~~~~~~~~i~~~~p~~~~g~~~g~~~~~~~~lg~~iGp~l~G~l~~~~g--~ 374 (418)
T TIGR00889 303 -----PEY-FGYALLFLSMIVYGCAFDFFNISGSVFVEKEVPVHIRASAQGLFTLMCNGFGSLLGYILSGVMVEKMF--A 374 (418)
T ss_pred -----cch-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhc--c
Confidence 000 123334556678888888888999999999999999999999997 6788999999999998887654 1
Q ss_pred CCCCCccccCCCCcchhHHHHHHHHHHHHHHHHHHHhhhccc
Q 007580 533 KGQPNWLAQNINTGRFDYLYWLLAVLSVINFCAFLYSAYRYK 574 (597)
Q Consensus 533 ~~~~~w~~~~l~~~~~~~~f~~~a~l~~l~~~~~~~~~~~~~ 574 (597)
....+ |+..|.+.+++.++..+.++++.++.+
T Consensus 375 ~~~~~----------~~~~f~~~~~~~~i~~~l~~~~~~~~~ 406 (418)
T TIGR00889 375 YGTFD----------WQTMWLFFAGYIAILAVLFMIFFKYSH 406 (418)
T ss_pred ccCCc----------hHHHHHHHHHHHHHHHHHHHHHhCCcc
Confidence 11012 477888888888888888888877543
No 81
>TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator).
Probab=99.81 E-value=7.5e-18 Score=177.09 Aligned_cols=166 Identities=16% Similarity=0.081 Sum_probs=135.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHhhhhHHHhhcccchHHHHHHHHHHHHHHH
Q 007580 71 ALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGL 150 (597)
Q Consensus 71 ~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~lsD~~~GR~~~~~~~~~l~~~g~ 150 (597)
.+..++..++.....+...+.++.++++++|++..+.+++.+.+.++..++.+++|+++|| +|||+++.++.++..++.
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr-~g~r~~~~~~~~~~~i~~ 81 (366)
T TIGR00886 3 LFFSWFGFFLSFSVWFAFSPLAVQMIKDDLGLSTAQLGNLVAVPVLAGAVLRIILGFLVDK-FGPRYTTTLSLLLLAIPC 81 (366)
T ss_pred hHHHHHHHHHHHHHHHHhHHhhhHHHHHHhCCCHHHhhHhhHHHHHHHHHHHHHHHHHHHH-hCchHHHHHHHHHHHHHH
Confidence 4455566666666767777777768999999999999999999999999999999999999 899999999999999999
Q ss_pred HHHHHhhhccccCCCCCcccccccccCCCCCccch-hHHHHHHHHHHHHHhhhchhhhhhhhhhccCCCCCchhhhhhhh
Q 007580 151 TGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSW-QMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDR 229 (597)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~-~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~R~~ 229 (597)
++++++ . +...+++.|+++|++.+. .+...++++|++|+++ |++
T Consensus 82 ~~~~~~----------------------------~~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~------r~~ 126 (366)
T TIGR00886 82 LWAGLA----------------------------VQSYSVLLLLRLFIGIAGGS-FASCMPWISFFFPKKI------QGT 126 (366)
T ss_pred HHHHHH----------------------------hhhHHHHHHHHHHHHHhchh-hHhHHHHHHHhcCHhh------hhH
Confidence 888876 4 677889999999999664 4567889999999998 999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhh----------ccchHHHHHH-HHHHHHHH
Q 007580 230 FFNFFYLSVTVGAIVAFTLVVYIQM----------EHGWGSAFGA-LAIAMGIS 272 (597)
Q Consensus 230 ~~~~~~~~~~lg~~l~p~i~~~i~~----------~~gw~~~f~i-~~~~~~~~ 272 (597)
..+++....++|..+++.+++.+.. +.+|||.|++ .++...+.
T Consensus 127 ~~~~~~~~~~~g~~~~~~i~~~l~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~ 180 (366)
T TIGR00886 127 ALGLAAGWGNMGGGVAQFVMPPIIGSLIFGAGLPAHLAWGWAFVIVPAGILLLP 180 (366)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHhcccccccccccchhHHHHHHHHHHH
Confidence 9999987778888888777766554 3489999944 34443333
No 82
>TIGR00885 fucP L-fucose:H+ symporter permease. This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector.
Probab=99.81 E-value=2.1e-16 Score=169.25 Aligned_cols=173 Identities=12% Similarity=0.036 Sum_probs=142.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHhhhhHHHhhcccchHHHHHHHHHHHHHH
Q 007580 70 AALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAG 149 (597)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~lsD~~~GR~~~~~~~~~l~~~g 149 (597)
.++.+....++..+. +++...+.+.+++++|.+..+.+++.+.+.++..++.++.|++.|| +|||+++.++.+++.++
T Consensus 4 ~~~~~~~~f~~~G~~-~~~~~~l~~~~~~~~~~s~~~~g~l~s~~~~g~~i~~~~~g~l~~r-~G~r~~~~~g~~l~~~g 81 (410)
T TIGR00885 4 PFALITSLFALWGFA-NDITNPMVPQFQQAFTLTAFQAALVQSAFYGGYFIMAIPAAIFMKK-LSYKAGILLGLFLYALG 81 (410)
T ss_pred HHHHHHHHHHHHHHH-HHhHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCchHHHHHHHHHHHHH
Confidence 455566666666666 3555555677799999999999999999999999999999999999 89999999999999999
Q ss_pred HHHHHHhhhccccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhhchhhhhhhhhhccCCCCCchhhhhhhh
Q 007580 150 LTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDR 229 (597)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~R~~ 229 (597)
..++..+... .++..+++.|++.|+|.|...+...+++.+..|+++ |++
T Consensus 82 ~~l~~~~~~~-------------------------~~~~~~l~~~~l~G~g~g~~~~~~~~~~~~~~~~~~------~~~ 130 (410)
T TIGR00885 82 AFLFWPAAEI-------------------------MNYTLFLVGLFILTAGLGFLETAANPYILVMGPEST------ATR 130 (410)
T ss_pred HHHHHHHHhh-------------------------ccHHHHHHHHHHHHhhHHHHHhhhhHHHHHHCCHhH------HHH
Confidence 8876544210 367889999999999999999999999999999888 888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhh--------------------------ccchHHHHHHHHHHHHHHHHH
Q 007580 230 FFNFFYLSVTVGAIVAFTLVVYIQM--------------------------EHGWGSAFGALAIAMGISNML 275 (597)
Q Consensus 230 ~~~~~~~~~~lg~~l~p~i~~~i~~--------------------------~~gw~~~f~i~~~~~~~~~~~ 275 (597)
..++.+...++|..++|.+++.+.. ..+||++|.+.+++.++..++
T Consensus 131 ~~~~~~~~~~lG~~~g~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~fl~~a~~~~~~~~~ 202 (410)
T TIGR00885 131 RLNLAQSFNPFGSIIGMVVAQQLILSNLPHQSQDVLDKLSPEELSAIKHSDLASVQTPYMIIGAVVLAVALL 202 (410)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCccchhhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999987742 246999998877755544333
No 83
>TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter. GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners.
Probab=99.80 E-value=3.2e-17 Score=176.91 Aligned_cols=176 Identities=15% Similarity=0.127 Sum_probs=131.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHhhhhHHHhhcc---cchHH-HHHHHHHHHHHHHHHHH
Q 007580 79 MAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAY---LGRYW-TIAIFTTIYLAGLTGIT 154 (597)
Q Consensus 79 ~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~lsD~~---~GR~~-~~~~~~~l~~~g~~~~~ 154 (597)
+...+....+..+++.|+++++|+++.+++++.+...+..++..|+.|+++||. +|||| .++++.++..++.+++.
T Consensus 9 ~~~~~~~~~~~~~l~~~~~~~~g~s~~~~g~i~~~~~i~~~i~~p~~G~lsDr~~~r~Grrr~~i~~~~~~~~i~~~~~~ 88 (437)
T TIGR00792 9 FGNNFIFAIVSTYLLFFYTDVLGLSAAFVGTLFLVARILDAITDPIMGNIVDRTRTRWGKFRPWLLIGAIPFSIVLVLLF 88 (437)
T ss_pred HHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHhccchheEeeecCCCCCCCcchhHHHhHHHHHHHHHHHH
Confidence 344555566677889999999999999999999999999999999999999973 68755 56677777777777776
Q ss_pred HhhhccccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhhchhhhhhhhhhccCC-CCCchhhhhhhhHHHH
Q 007580 155 LCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFD-ERSKDYKTHLDRFFNF 233 (597)
Q Consensus 155 ~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~~~-~~~~~~~~~R~~~~~~ 233 (597)
...... .......+++.+++.+++.+.......++.+|..+ +++ |++..++
T Consensus 89 ~~~~~~----------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~------R~~~~~~ 140 (437)
T TIGR00792 89 TTPDFS----------------------ATGKLVYAYITYILLGLFYSFVNIPYWSLVPAITLDPRE------RESLSTF 140 (437)
T ss_pred hCCCCC----------------------cchHHHHHHHHHHHHHHHHHhhcccHhhCcccccCCHHH------HHHHHHH
Confidence 541100 00235566777788888888888888888899875 455 9999999
Q ss_pred HHHHHHHHHHHHHHHHHHhh-------hccchHHHHHHHHHHHHHHHHHHHHhcCc
Q 007580 234 FYLSVTVGAIVAFTLVVYIQ-------MEHGWGSAFGALAIAMGISNMLFFIGTPL 282 (597)
Q Consensus 234 ~~~~~~lg~~l~p~i~~~i~-------~~~gw~~~f~i~~~~~~~~~~~~~~~~~~ 282 (597)
.....++|..+++.+.+.+. +..+|++.+.+.+++..+..++.+...++
T Consensus 141 ~~~~~~~g~~l~~~~~~~l~~~~~~~~~~~g~~~~~~i~~~l~~~~~~~~~~~~~e 196 (437)
T TIGR00792 141 RRFGATLGGLLVAVIVLPLVSYFGGGDDKFGWFMFALVLALIGVVSLIICFFGTKE 196 (437)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCcccccHHHHHHHHHHHHHHHHHHHHcCCEe
Confidence 88888888877776665544 24689999988887766665554444443
No 84
>TIGR00896 CynX cyanate transporter. This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate.
Probab=99.80 E-value=4.1e-17 Score=171.20 Aligned_cols=144 Identities=16% Similarity=0.120 Sum_probs=122.7
Q ss_pred HHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHhhhhHHHhhcccchHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCcc
Q 007580 90 VNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNC 169 (597)
Q Consensus 90 ~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~lsD~~~GR~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~c 169 (597)
..+.+.+.+++|++.++.+++.+.+.++..++.++.|+++|| +|||+++.++.++..++.+.+ .+
T Consensus 20 ~~~lp~l~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr-~g~r~~~~~~~~~~~~~~~~~-~~------------- 84 (355)
T TIGR00896 20 GPLLPQIRSALGMSFSVAGLLTALPVLCFAVLAPLAPWLARR-FGEERSVAAGLLLIAAGILIR-SA------------- 84 (355)
T ss_pred cccHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHH-hCchHHHHHHHHHHHHHHHHH-Hh-------------
Confidence 334566788999999999999999999999999999999999 899999999988887777665 33
Q ss_pred cccccccCCCCCccchhHHHHHHHHHHHHHhhhchhhhhhhhhhccCCCCCchhhhhhhhHHHHHHHHHHHHHHHHHHHH
Q 007580 170 DRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLV 249 (597)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~R~~~~~~~~~~~~lg~~l~p~i~ 249 (597)
.+...+++.|++.|+|.+...+..+..+.|.++ ++ |++.+++++...++|..+++.++
T Consensus 85 ---------------~~~~~l~~~~~~~g~g~~~~~~~~~~~~~~~~~-~~------~~~~~~~~~~~~~~g~~i~~~~~ 142 (355)
T TIGR00896 85 ---------------PGTALLFAGTALIGVGIAIINVLLPSLIKRDFP-QR------VGLMTGLYSMALMGGAALAAAAT 142 (355)
T ss_pred ---------------ccHHHHHHHHHHHHHHHHHHhccchHHHHHhCc-ch------hhHHHHHHHHHHHHHHHHHHHHH
Confidence 356778899999999999988888888889886 56 99999999999999999999999
Q ss_pred HHhhhcc--chHHHHHHHHHHHH
Q 007580 250 VYIQMEH--GWGSAFGALAIAMG 270 (597)
Q Consensus 250 ~~i~~~~--gw~~~f~i~~~~~~ 270 (597)
+.+.+.. +||+.|.+.++..+
T Consensus 143 ~~l~~~~~~~w~~~f~~~~~~~~ 165 (355)
T TIGR00896 143 VPLAQHSGGHWQQALAWWALPAL 165 (355)
T ss_pred HHHHHhhhhhHHHHHHHHHHHHH
Confidence 9887764 39998877665443
No 85
>TIGR00883 2A0106 metabolite-proton symporter. This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc.
Probab=99.80 E-value=7.7e-17 Score=170.31 Aligned_cols=165 Identities=18% Similarity=0.223 Sum_probs=118.8
Q ss_pred HHHHHHHHHHHHHHHHHHhhC--CChHHHHHHHH--HHH---HHHHHHhhhhHHHhhcccchHHHHHHHHHHHHHHHHHH
Q 007580 81 ERMAYFGLSVNMVTFMFYVMH--KSFADSSNAVN--NFL---GISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGI 153 (597)
Q Consensus 81 ~~~~~~~~~~~l~~yl~~~~~--~s~~~a~~~~~--~~~---~~~~~~~~~~G~lsD~~~GR~~~~~~~~~l~~~g~~~~ 153 (597)
+.+..+.+. ....++.++.. .++++.+...+ .+. ++..++.++.|+++|| +|||+++.++.++..++..++
T Consensus 5 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~l~dr-~g~r~~l~~~~~~~~~~~~~~ 82 (394)
T TIGR00883 5 EWFDFYLYG-FAAVLVFHTFFPPSGDPLVALLATFATFAAGFLARPLGAIVFGHFGDR-IGRKKTLVITLLMMGIGTLLI 82 (394)
T ss_pred hHHHHHHHH-HHHHHHHHHhcCCCCChHHHHHHHHHHHHHHHHHhhhHHHHhhhhhhh-hhhHHHHHHHHHHHHHHHHHH
Confidence 334433333 34555666544 33444443333 233 3334688999999999 899999999999999999888
Q ss_pred HHhhhccccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhhchhhhhhhhhhccCCCCCchhhhhhhhHHHH
Q 007580 154 TLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNF 233 (597)
Q Consensus 154 ~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~R~~~~~~ 233 (597)
+++...... .......+++.|+++|++.+...+...++++|.+|+++ |+...++
T Consensus 83 ~~~~~~~~~--------------------~~~~~~~~~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~------r~~~~~~ 136 (394)
T TIGR00883 83 GLLPSYATI--------------------GIWAPILLLLARLIQGFSLGGEWGGAALYLAEYAPPGK------RGFYGSF 136 (394)
T ss_pred hhCCChhhh--------------------HHHHHHHHHHHHHHHHhhccccccccHHHhhhcCCccc------chHHHHH
Confidence 876321000 00112357889999999999999999999999999998 9999999
Q ss_pred HHHHHHHHHHHHHHHHHHhh--------hccchHHHHHHHHHHHHHHH
Q 007580 234 FYLSVTVGAIVAFTLVVYIQ--------MEHGWGSAFGALAIAMGISN 273 (597)
Q Consensus 234 ~~~~~~lg~~l~p~i~~~i~--------~~~gw~~~f~i~~~~~~~~~ 273 (597)
.+.+..+|..+++.++..+. +..+||+.|.+.++..+++.
T Consensus 137 ~~~~~~~G~~i~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~ 184 (394)
T TIGR00883 137 QQVGAPVGLLLAALTVLLLSYLLGDDALLEWGWRIPFLVSAVLVLIGL 184 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCHHHhhccchHHHHHHHHHHHHHHH
Confidence 99999999999998877654 35689999987766554443
No 86
>KOG0255 consensus Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily) [General function prediction only]
Probab=99.79 E-value=5.2e-18 Score=187.58 Aligned_cols=140 Identities=15% Similarity=0.120 Sum_probs=128.2
Q ss_pred HhhCCChHHHHHHHHHHHHHHHHHhhhhHHHhhcccchHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCcccccccccC
Q 007580 98 YVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDRISQLLG 177 (597)
Q Consensus 98 ~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~lsD~~~GR~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~c~~~~~~~~ 177 (597)
+..+.+.....+..+.+.++..+|+++.|++||| +|||++++++.++.+++.++.+++
T Consensus 111 ~~~c~~~~~~~~~~s~~~~G~~vG~~i~g~lsD~-~GRk~~~~~~~~~~~i~~~~~a~a--------------------- 168 (521)
T KOG0255|consen 111 NLVCDSSTLVALGQSLFFLGVLVGSLIFGPLSDR-FGRKPVLLVSLLLFIIFGILTAFA--------------------- 168 (521)
T ss_pred ceeeCcHhHHHHHHHHHHHHHHHHHhhheehHhh-cccHHHHHHHHHHHHHHHHHHHHh---------------------
Confidence 5566778888899999999999999999999999 899999999999999999999887
Q ss_pred CCCCccchhHHHHHHHHHHHHHhhhchhhhhhhhhhccCCCCCchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhccc
Q 007580 178 SCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHG 257 (597)
Q Consensus 178 ~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~R~~~~~~~~~~~~lg~~l~p~i~~~i~~~~g 257 (597)
+++..+++.|++.|++.++...+...+++|+++++. |+...++ ......++.++|.+++++.. +
T Consensus 169 -------~~~~~~~~~Rfl~G~~~~~~~~~~~~~~~E~~~~~~------R~~~~~~-~~~~~~~~~~~~~~~a~~~~--~ 232 (521)
T KOG0255|consen 169 -------PNYWMFLIFRFLSGFFGSGPLTVGFGLVAEIVSPKQ------RGLALTL-GGFFFVGGLMLPAGAAYITR--D 232 (521)
T ss_pred -------CcHHHHHHHHHHHHhhccchhHHhHhhheeecCcch------hhHHHHH-HHHHHHHHHHHHHHHHHHHh--h
Confidence 688999999999999999999999999999999999 9999999 88888899999999999987 8
Q ss_pred hHHHHHHHHHHHHHHHHH
Q 007580 258 WGSAFGALAIAMGISNML 275 (597)
Q Consensus 258 w~~~f~i~~~~~~~~~~~ 275 (597)
|||.+++..+..++.++.
T Consensus 233 Wr~~~~~~~~~~~~~~~~ 250 (521)
T KOG0255|consen 233 WRWLFWIISIPSGLFLLL 250 (521)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 999999988776665555
No 87
>COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism]
Probab=99.79 E-value=1.2e-16 Score=163.60 Aligned_cols=372 Identities=15% Similarity=0.093 Sum_probs=244.6
Q ss_pred CCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHhhhhHHHhhcccchHHHHHHHHH
Q 007580 65 TGGWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTT 144 (597)
Q Consensus 65 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~lsD~~~GR~~~~~~~~~ 144 (597)
+..+|.++.-.+. +...+....+.+.+.+++.+++|+|+.|.++++....+...+..++-|++.|| ||-|++..++.+
T Consensus 10 ~~~~~~L~~S~~a-f~v~F~VW~l~s~l~~~i~~~~~LS~~q~~ll~aiPil~GallRl~~g~l~dr-fGgR~~~~~s~~ 87 (417)
T COG2223 10 RIARRNLWLSTLA-FDVGFMVWTLFSPLGVFIKSDFGLSEGQKGLLVAIPILVGALLRLPYGFLTDR-FGGRKWTILSML 87 (417)
T ss_pred cchhHHHHHHHHH-HHHHHHHHHHHHHHHhhhccccCCCHHHHHHHHHHHHHHhHHHHHHHHhhhcc-cCchHHHHHHHH
Confidence 4455555544443 33344446677788899999999999999999999999999999999999999 899999999999
Q ss_pred HHHHHHHHHHHhhhccccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhhchhhhhhhhhhccCCCCCchhh
Q 007580 145 IYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYK 224 (597)
Q Consensus 145 l~~~g~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~ 224 (597)
+..+-....+++.+. ++.+.+++.+.+.|++.+ ......+.++.+||+++
T Consensus 88 l~~IP~~~~~~a~~~-------------------------~~~~~ll~~gll~G~~Ga-sFav~m~~~s~~fP~~~---- 137 (417)
T COG2223 88 LLLIPCLGLAFAVTY-------------------------PSTWQLLVIGLLLGLAGA-SFAVGMPNASFFFPKEK---- 137 (417)
T ss_pred HHHHHHHHHHHHccC-------------------------CchHHHHHHHHHHhcccc-eehcccccccccCChhh----
Confidence 999988888888542 344688888899998755 46778888999999999
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHhhhccc---hHHHHHHHHHHHHHHHHHHHHhcCcccccCCCCCchhhHHHHHH
Q 007580 225 THLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHG---WGSAFGALAIAMGISNMLFFIGTPLYRHRLPGGSPLTRVAQVLV 301 (597)
Q Consensus 225 ~~R~~~~~~~~~~~~lg~~l~p~i~~~i~~~~g---w~~~f~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 301 (597)
.|.+.+++. ..|+|..+...++..+....| |+....+..+.+++..+.+++..++.+..++..++... .+. .
T Consensus 138 --qG~AlGI~g-~GN~G~av~q~~~P~v~~~~g~~~w~~~~~i~~~~l~v~~v~~~~~~~d~p~~r~~~~~~~~-~~~-~ 212 (417)
T COG2223 138 --QGLALGIAG-AGNLGVAVAQLVAPLVAVAFGFLAWRNVAGIYVVALAIAAVLAWLGMNDVPEHRASVKPQLP-AQL-K 212 (417)
T ss_pred --hhHHHHHhc-cccccHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhCCChhhhccccccch-hHH-H
Confidence 999999999 899999999999999888888 99999998888888888777777655443332222111 000 0
Q ss_pred HHHHhhhcccCccccccccccCCCcccccCCcccccCCcchhhHHHhhhhhcccCCCCCCccccchhhhhhhHhHhhhhh
Q 007580 302 AAFRKRHAAFSSSELIGLYEVPGKHSAIKGSGKIAHTDDFRCLDKAALELKEDVINPSPWKLCTVTQVEEVKTLVRLVPI 381 (597)
Q Consensus 302 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 381 (597)
. +...+....+..+
T Consensus 213 ~------------------------------------------------------------------v~~~~~~W~lsll 226 (417)
T COG2223 213 A------------------------------------------------------------------VFSNKDTWLLSLL 226 (417)
T ss_pred H------------------------------------------------------------------HhcCcchHHHHHH
Confidence 0 0000111111111
Q ss_pred HHHHHHHHHHH-hcchhhHHHHHhhh------------------cccC--CCCCCCChhHHHHHHHHHHHHHHHHHHHHH
Q 007580 382 PACTIMLNVIL-TEFLTLSVQQAYTM------------------NTHM--GHPRGASQLQRVGIGLAVSILSVIWAGIFE 440 (597)
Q Consensus 382 ~~~~~~~~~~~-~~~~~~~~~~~~~~------------------~~~~--~~~~~~~~~~~i~~G~~l~~~~~~~~~~~~ 440 (597)
...+.-.++.+ .+.+.++..+ ... -+.+ ...+|....+.+.+....++++...+....
T Consensus 227 Y~~tFG~Fvgfs~~l~~~~~~~-fg~~~~~Ag~~a~~f~~~g~l~Rp~GG~LsDR~Gg~rv~~~~f~~~~~~~~~l~~~~ 305 (417)
T COG2223 227 YFATFGGFVGFSAYLPMYLVTQ-FGLSPVTAGLIAFLFPLIGALARPLGGWLSDRIGGRRVTLAVFVGMALAAALLSLFL 305 (417)
T ss_pred HHHHHHHHHHHHHHHHHHHHHh-cCCChhhHHHHHHHHHHHHHHHHhccchhhhhccchhHHHHHHHHHHHHHHHHHccc
Confidence 11111111111 1111111111 011 1111 455666666666666666666666555431
Q ss_pred HHHhHHhhhcCccccccCcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHHHHHHHH
Q 007580 441 RYRRNYAISHGYEFSFLTAMPDLSAYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPDAMKSIGSAYAALAGGLGCFAASIL 520 (597)
Q Consensus 441 ~~~~~~~~~~g~~~~~~~~~~~~s~~~l~~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~gl~~~~~~lg~~lg~~l 520 (597)
... .++ .+.. ......+..+++.|+|++-+ ..++..+.|+ +-|.+.|+....+++|++.-|..
T Consensus 306 ~~~-----~~~------~~~~-~~~~~~l~l~~~~G~GnGsv----fk~Ip~if~~-~~G~v~G~vga~G~lGGf~lp~~ 368 (417)
T COG2223 306 TGF-----GHG------GSFV-VFVAVFLALFVFAGLGNGSV----FKMIPVIFPK-ETGAVTGIVGAIGGLGGFFLPLA 368 (417)
T ss_pred ccc-----ccC------cchH-HHHHHHHHHHHHhccCcchh----eeechHHHHh-hhhHHHHHHHHhccccccchhHH
Confidence 100 000 0000 11122333444455554443 3334444444 57899999999999999999999
Q ss_pred HHHhhhccCCCCCCCCCccccCCCCcchhHHHHHHHHHHHHHHHHHHHhhhccc
Q 007580 521 NSIIKSVTGNPKKGQPNWLAQNINTGRFDYLYWLLAVLSVINFCAFLYSAYRYK 574 (597)
Q Consensus 521 ~~~v~~~~g~~~~~~~~w~~~~l~~~~~~~~f~~~a~l~~l~~~~~~~~~~~~~ 574 (597)
.+...+.+| .+...|+++..+.+++.+..+....|.+
T Consensus 369 ~g~~~~~tg-----------------~~~~~f~~~~~~~~~a~v~~~~~y~r~~ 405 (417)
T COG2223 369 FGVSLDLTG-----------------SYTGAFMLLLAFYLVALVLTWALYARRR 405 (417)
T ss_pred HHHHHHhcc-----------------cHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 999888876 3567899999999999888888766643
No 88
>PRK11902 ampG muropeptide transporter; Reviewed
Probab=99.78 E-value=1.5e-15 Score=162.31 Aligned_cols=166 Identities=13% Similarity=0.092 Sum_probs=131.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHhhhhHHHhhccc-----chHH-HHHHHHHHHH
Q 007580 74 IFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYL-----GRYW-TIAIFTTIYL 147 (597)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~lsD~~~-----GR~~-~~~~~~~l~~ 147 (597)
++...+.+.+.+.-....+|.|+++ .|+|.++.+++...... .+..+++|+++|| + |||| .+.++.++..
T Consensus 4 ~~~l~~~~~~~~~~~~~~~~~~l~~-~g~~~~~ig~~~~~~~~--~~~~~l~g~~~Dr-~~~~~~g~rr~~l~~~~~~~~ 79 (402)
T PRK11902 4 MLLLGFASGLPLALTSGTLQAWMTV-EGLDIQTIGFFSLVGQA--YIFKFLWAPLMDR-YTPPLLGRRRGWLLLTQVGLA 79 (402)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHH-cCCCHHHHHHHHHHHHH--HHHHHHHHHHHHc-ccccCCCcchhHHHHHHHHHH
Confidence 3444566666666667778888875 59999999988665554 6888999999999 7 8876 6777777777
Q ss_pred HHHHHHHHhhhccccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhhchhhhhhhhhhccCCCCCchhhhhh
Q 007580 148 AGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHL 227 (597)
Q Consensus 148 ~g~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~R 227 (597)
+++..+.+... . .+...+++..++.+++.+...+...+++.|++|+++ |
T Consensus 80 l~~~~l~~~~~------~-------------------~~~~~l~~~~~~~~~~~~~~~~~~~al~~~~~~~~~------r 128 (402)
T PRK11902 80 ASIAAMAFCPP------H-------------------AALWPLAGLAVLVAFLSASQDIVFDAYSTDVLHPEE------R 128 (402)
T ss_pred HHHHHHHhcCc------c-------------------chHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhh------h
Confidence 77776665411 0 345666767677888889999999999999999999 9
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhhhc-cchHHHHHHHHHHHHHHHH
Q 007580 228 DRFFNFFYLSVTVGAIVAFTLVVYIQME-HGWGSAFGALAIAMGISNM 274 (597)
Q Consensus 228 ~~~~~~~~~~~~lg~~l~p~i~~~i~~~-~gw~~~f~i~~~~~~~~~~ 274 (597)
+++.++...+..+|..+++.+++++.+. .|||..|++.++..++..+
T Consensus 129 ~~~~~~~~~g~~~g~i~g~~l~~~l~~~~~gw~~~f~i~a~~~l~~~l 176 (402)
T PRK11902 129 GAGAAVKVLGYRLAMLVSGGLALWLADRVLGWGNTYLLMAGLMLAGAL 176 (402)
T ss_pred hHHHHHHHHHHHHHHHHHhHHHHHHHhcccCHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999998885 5999999988876655444
No 89
>TIGR00806 rfc RFC reduced folate carrier. Proteins of the RFC family are so-far restricted to animals. RFC proteins possess 12 putative transmembrane a-helical spanners (TMSs) and evidence for a 12 TMS topology has been published for the human RFC. The RFC transporters appear to transport reduced folate by an energy-dependent, pH-dependent, Na+-independent mechanism. Folate:H+ symport, folate:OH- antiport and folate:anion antiport mechanisms have been proposed, but the energetic mechanism is not well defined.
Probab=99.77 E-value=4.8e-16 Score=163.31 Aligned_cols=159 Identities=12% Similarity=0.032 Sum_probs=137.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChHH-HHHHHHHHHHHHHHHhhhhHHHhhcccchHHHHHHHHHHHHH
Q 007580 70 AALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFAD-SSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLA 148 (597)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~-a~~~~~~~~~~~~~~~~~~G~lsD~~~GR~~~~~~~~~l~~~ 148 (597)
..+++++..|+..+= ...+.+.+|+.+++|++.++ .+.+.+.|..++.++.+++|+++|| +|-|+++.++.+.+.+
T Consensus 28 ~~~~lC~fGF~~e~R--~n~s~a~p~L~~elglT~~qv~G~I~s~F~ysYal~qIp~GlLaDr-lG~K~vL~l~~l~Wsl 104 (511)
T TIGR00806 28 LVLYLCFYGFMAQFR--PGESFITPYLLTVLNFTEETVTNEIIPVLPYSHLAVLVPVFLLTDY-LRYKPVLVLQALSFVC 104 (511)
T ss_pred HHHHHHHHHHHHHhh--chHHHHHHHHHHHcCCCHHHhcchHHHHHHHHHHHHHHHHHHHHHH-hCchHHHHHHHHHHHH
Confidence 444455555554332 22355677999999999999 9999999999999999999999999 8999999999999999
Q ss_pred HHHHHHHhhhccccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhhchhhhhhhhhhccCCCCCchhhhhhh
Q 007580 149 GLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLD 228 (597)
Q Consensus 149 g~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~R~ 228 (597)
..++++++ .+...+.+.|++.|++.|+.. +...+++.++|+++ |+
T Consensus 105 ~t~L~~fa----------------------------~Sl~~L~i~R~llGvaEA~~~-A~~syI~~WfP~kE------R~ 149 (511)
T TIGR00806 105 VWLLLLLG----------------------------TSVWHMQLMEVFYSVTMAARI-AYSSYIFSLVPPSR------YQ 149 (511)
T ss_pred HHHHHHHH----------------------------HHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHCCHHH------HH
Confidence 99999987 467899999999999999999 99999999999999 99
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhhccchHHHHHHHHH
Q 007580 229 RFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAI 267 (597)
Q Consensus 229 ~~~~~~~~~~~lg~~l~p~i~~~i~~~~gw~~~f~i~~~ 267 (597)
++.+++..+..+|.++++++++++ ..+|||+-+.+..+
T Consensus 150 ratsi~~sg~~vG~~Ia~~L~qll-~s~gWr~y~~Ln~I 187 (511)
T TIGR00806 150 RAAAYSRAAVLLGVFLSSVLGQLL-VTLGWISYSTLNII 187 (511)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-HhcCchhHHHHHHH
Confidence 999999999999999999999994 46799986655444
No 90
>PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins. Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes [].
Probab=99.77 E-value=6.5e-16 Score=168.48 Aligned_cols=152 Identities=15% Similarity=0.131 Sum_probs=127.5
Q ss_pred HHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHhhhhHHHhhcccchHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCcc
Q 007580 90 VNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNC 169 (597)
Q Consensus 90 ~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~lsD~~~GR~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~c 169 (597)
.....++.+++|-+ ....|+.+.+.++..+..++.|.|||. ||||..++++.++.++|.++++.+
T Consensus 64 a~~l~~I~~diG~~-~~~~w~~~~~~l~~av~~~~~G~LSDl-fGRr~~~i~g~~l~vvG~Iv~atA------------- 128 (599)
T PF06609_consen 64 ASILPYINADIGGS-DNWSWFSTAWTLASAVSFPFVGRLSDL-FGRRYFFIIGSLLGVVGSIVCATA------------- 128 (599)
T ss_pred HHHHHHHHHhcCCC-ccchHHHHHHHHHHHHHHHhhHHHHHH-hcchHHHHHHHHHHHhHHHHhhcC-------------
Confidence 45567899999876 467788899999999999999999997 999999999999999999999976
Q ss_pred cccccccCCCCCccchhHHHHHHHHHHHHHhhhchhhhhhhhhhccCCCCCchhhhhhhhHHHHHHHHHHHHHHHHHHHH
Q 007580 170 DRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLV 249 (597)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~R~~~~~~~~~~~~lg~~l~p~i~ 249 (597)
+++..++++..+.|+|.|... +....++|..|.+. |..+..+......+....+|.++
T Consensus 129 ---------------~~~~~~iag~~l~GvgaG~~~-~~~~~isEl~p~k~------R~~~~~~~~~~~i~~~~~~~~ia 186 (599)
T PF06609_consen 129 ---------------QNMNTFIAGMVLYGVGAGVQE-LAALAISELVPNKW------RGLGLAIASIPFIITTWISPLIA 186 (599)
T ss_pred ---------------CcHHHHHHHHHHHHHhhHHHH-HHHHHHHHhcccch------hhhHhHHHHHHHHhhhcccHHHH
Confidence 678899999999999977665 45666899999988 98888777766666666788888
Q ss_pred HHhhhccchHHHHHHHHHHHHHHHHHHHH
Q 007580 250 VYIQMEHGWGSAFGALAIAMGISNMLFFI 278 (597)
Q Consensus 250 ~~i~~~~gw~~~f~i~~~~~~~~~~~~~~ 278 (597)
..+..+.+|||.|++.++...+++++.++
T Consensus 187 ~~~~~~~~WRw~~~~~~i~~~i~~vl~~~ 215 (599)
T PF06609_consen 187 QLFAAHSGWRWIFYIFIIWSGIALVLIFF 215 (599)
T ss_pred HHhccCCCcchHHHHHHHHHHHHHHHHHH
Confidence 77777789999999998877766654443
No 91
>TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter. This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot.
Probab=99.76 E-value=3.2e-15 Score=160.79 Aligned_cols=197 Identities=12% Similarity=0.060 Sum_probs=138.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHhhhhHHHhh----cccchHHHHHHH-HHH
Q 007580 71 ALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLAD----AYLGRYWTIAIF-TTI 145 (597)
Q Consensus 71 ~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~lsD----~~~GR~~~~~~~-~~l 145 (597)
++.+....+-..+++....+++++|+ +++|.+...++++.....+...+.+++.|++|| | +||||.++++ .+.
T Consensus 6 li~~~~~~~Giq~~~~l~~~~l~~yl-~~lg~~~~~~~~i~~~~~l~~~i~~Pi~G~lSDr~~sr-~GRRrp~il~g~~~ 83 (477)
T TIGR01301 6 LLRVASVAAGVQFGWALQLSLLTPYV-QELGIPHAWASIIWLCGPLSGLLVQPLVGYLSDRCTSR-FGRRRPFIAAGAAL 83 (477)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-HHcCCCHHHHHHHHHHHHHHHHHHHhHeeehhcCCCCC-CCChHHHHHHHHHH
Confidence 45555555666777666667777765 679999999999999999999999999999999 6 7999998875 555
Q ss_pred HHHHHHHHHHhhhccccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhhchhhhhhhhhhccCCCCCchhhh
Q 007580 146 YLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKT 225 (597)
Q Consensus 146 ~~~g~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~ 225 (597)
..+++.+++.+.....+..+ . ............++++..+..++....++...++++|.+|+++.+
T Consensus 84 ~~~~l~ll~~~~~~~~~~~~----------~-~~~~~~~~~i~~~~i~~~lld~~~n~~~~p~rALiaDl~p~~~~~--- 149 (477)
T TIGR01301 84 VAFAVILIGFAADIGHLFGD----------N-LDKKTKPRAIIVFVVGFWILDVANNMLQGPCRAFLADLTGGDARR--- 149 (477)
T ss_pred HHHHHHHHHhCchhhhhccc----------c-ccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCchhHH---
Confidence 55566666654321100000 0 000000011234455555666788888889999999999988711
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHh--hhcc-------------chHHHHHHHHHHHHHHHHHHHHhcCccc
Q 007580 226 HLDRFFNFFYLSVTVGAIVAFTLVVYI--QMEH-------------GWGSAFGALAIAMGISNMLFFIGTPLYR 284 (597)
Q Consensus 226 ~R~~~~~~~~~~~~lg~~l~p~i~~~i--~~~~-------------gw~~~f~i~~~~~~~~~~~~~~~~~~~~ 284 (597)
++.+.++.....++|..+|+.++++. .+.. +.++.|++.+++.+++.++..+..++.+
T Consensus 150 -~~~a~~~~~~~~~lG~ilg~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~F~i~a~~l~i~~l~t~~~v~E~~ 222 (477)
T TIGR01301 150 -TRIANAYFSFFMAIGNVLGYAAGAYSGLYKIFPFTKTEACGVSCANLKSCFLIDIILLAILTYIALSAVKENP 222 (477)
T ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhcccccccccccccchHHHHHHHHHHHHHHHHHHHeeeeeccC
Confidence 35788999999999999999999875 2211 5688999988877777777666665543
No 92
>PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters. Two such families have been found to occur ubiquitously in all classifications of living organisms. These are the ATP-binding cassette (ABC) superfamily and the major facilitator superfamily (MFS), also called the uniporter-symporter-antiporter family. While ABC family permeases are in general multicomponent primary active transporters, capable of transporting both small molecules and macromolecules in response to ATP hydrolysis the MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Although well over 100 families of transporters have now been recognised and classified, the ABC superfamily and MFS account for nearly half of the solute transporters encoded within the genomes of microorganisms. They are also prevalent in higher organisms. The importance of these two families of transport systems to living organisms can therefore not be overestimated []. The MFS was originally believed to function primarily in the uptake of sugars but subsequent studies revealed that drug efflux systems, Krebs cycle metabolites, organophosphate:phosphate exchangers, oligosaccharide:H1 symport permeases, and bacterial aromatic acid permeases were all members of the MFS. These observations led to the probability that the MFS is far more widespread in nature and far more diverse in function than had been thought previously. 17 subgroups of the MFS have been identified []. Evidence suggests that the MFS permeases arose by a tandem intragenic duplication event in the early prokaryotes. This event generated a 2-transmembrane-spanner (TMS) protein topology from a primordial 6-TMS unit. Surprisingly, all currently recognised MFS permeases retain the two six-TMS units within a single polypeptide chain, although in 3 of the 17 MFS families, an additional two TMSs are found []. Moreover, the well-conserved MFS specific motif between TMS2 and TMS3 and the related but less well conserved motif between TMS8 and TMS9 [] prove to be a characteristic of virtually all of the more than 300 MFS proteins identified.; GO: 0022857 transmembrane transporter activity, 0055085 transmembrane transport, 0016021 integral to membrane
Probab=99.76 E-value=1.3e-22 Score=220.06 Aligned_cols=379 Identities=15% Similarity=0.102 Sum_probs=226.4
Q ss_pred HHHHHHHHHHHHHHHHhhhhHHHhhcccchHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCcccccccccCCCCCccch
Q 007580 106 DSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSW 185 (597)
Q Consensus 106 ~a~~~~~~~~~~~~~~~~~~G~lsD~~~GR~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~ 185 (597)
..++..+.+.++..+|.+++|+++|| +|||++++++.++..++.++.+++... .
T Consensus 47 ~~~~~~~~~~~g~~~G~~~~g~~~d~-~GRk~~~~~~~~~~~i~~~~~~~~~~~-------------------------~ 100 (451)
T PF00083_consen 47 LSSLLTSSFFIGAIVGALIFGFLADR-YGRKPALIISALLMIIGSILIAFAPSY-------------------------N 100 (451)
T ss_pred HHHHHHHHHHhhhccccccccccccc-ccccccccccccccccccccccccccc-------------------------c
Confidence 45788899999999999999999999 899999999999999999999987210 1
Q ss_pred hHHHHHHHHHHHHHhhhchhhhhhhhhhccCCCCCchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhh---ccchHHHH
Q 007580 186 QMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQM---EHGWGSAF 262 (597)
Q Consensus 186 ~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~R~~~~~~~~~~~~lg~~l~p~i~~~i~~---~~gw~~~f 262 (597)
+...++++|++.|++.|+..+....++.|..|++. |+...++......+|..++..++-.+.+ ..+||+.+
T Consensus 101 ~~~~~~~~R~~~G~~~g~~~~~~~~~~~E~~~~~~------R~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~Wr~~~ 174 (451)
T PF00083_consen 101 NFWMLLIGRFLIGFGIGGAYVVSPIYISEIAPPKH------RGFLSSLFQLFWALGILLASLIGYIVSYYSDNWGWRILL 174 (451)
T ss_pred ccccccccccccccccccccccccccccccccccc------ccccccccccccccccccccccccccccccccccccccc
Confidence 67889999999999999999999999999999999 9999999999999998888877654433 24599988
Q ss_pred HHHHHHHHHHHHHHHHhcCcccccCCCCCchhhHHHHHHHHHHhhhcccCccccccccccCCCcccccCCcccccCCcch
Q 007580 263 GALAIAMGISNMLFFIGTPLYRHRLPGGSPLTRVAQVLVAAFRKRHAAFSSSELIGLYEVPGKHSAIKGSGKIAHTDDFR 342 (597)
Q Consensus 263 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 342 (597)
++.++..++..+... ..||+|+| ++.+++.+++.+..+++.+.+...
T Consensus 175 ~~~~~~~l~~~~~~~--------------------------------~~pESP~w-L~~~~~~~~A~~~l~~~~~~~~~~ 221 (451)
T PF00083_consen 175 IFGAIPSLLVLLLRF--------------------------------FLPESPRW-LLSKGRDEEAEKVLRKLRGKEIED 221 (451)
T ss_pred ccccccccccccccc--------------------------------ccccccce-eccccccccccccccccccccccc
Confidence 877765543322221 13566666 666666666655555532211100
Q ss_pred hhHHHhhhhhcccC--CCCCCccccchhhhhhhHhHhhhhhHHHHHHHH-HHHhcchhhHHHHHhhhccc-C--------
Q 007580 343 CLDKAALELKEDVI--NPSPWKLCTVTQVEEVKTLVRLVPIPACTIMLN-VILTEFLTLSVQQAYTMNTH-M-------- 410 (597)
Q Consensus 343 ~l~~a~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~-~-------- 410 (597)
.+....+...+.. ....|+.+..... .++.+...+.+........ .......+.+... ...+.. .
T Consensus 222 -~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~~l~~~~~~~g~~~~~~~~~~i~~~-~~~~~~~~~~~~~~~~ 298 (451)
T PF00083_consen 222 -EEIEEIKAEKKESQESKASWRDLFRNKK-YRKRLLIALLLQFFQQFSGINFIFYYSPSIFEN-AGISNSFLATLILGLV 298 (451)
T ss_pred -ccccccccccccccccceeeeecccccc-ccccccccccccccccccccccccccccccccc-cccccccccccccccc
Confidence 0000000000000 0011221111100 1122222222221111111 1111111111111 111111 0
Q ss_pred ---------CCCCCCChhHHHHHHHHHHHHHHHHHH-HHHHHHhHHhhhcCccccccCcCccchHHHHHHHHHHHHHHHH
Q 007580 411 ---------GHPRGASQLQRVGIGLAVSILSVIWAG-IFERYRRNYAISHGYEFSFLTAMPDLSAYWLLIQYCLIGIAEV 480 (597)
Q Consensus 411 ---------~~~~~~~~~~~i~~G~~l~~~~~~~~~-~~~~~~~~~~~~~g~~~~~~~~~~~~s~~~l~~~~~l~g~g~~ 480 (597)
...++.+++..+..+.++++++...++ ....... .+.. .+...++...+.......
T Consensus 299 ~~~~~~~~~~~~~~~GRr~~~i~~~~~~~~~~~~~~~~~~~~~~-------------~~~~-~~~~~i~~~~l~~~~~~~ 364 (451)
T PF00083_consen 299 NFLGTLLAIFLIDRFGRRKLLIIGLLLMAICSLILGIIFFLGVS-------------SSSW-WSILSIVFLALFFAFFSL 364 (451)
T ss_pred cccccccccccccccccccccccccccccccccccccccccccc-------------cccc-cccccceeeeeccccccc
Confidence 122222233334455555544444443 1100000 0000 122222222222222233
Q ss_pred HHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCCCCCccccCCCCcchhHHHHHHHHHHH
Q 007580 481 FCIVGLLEFLYEEAPDAMKSIGSAYAALAGGLGCFAASILNSIIKSVTGNPKKGQPNWLAQNINTGRFDYLYWLLAVLSV 560 (597)
Q Consensus 481 ~~~~~~~~~~~~~~P~~~rg~~~gl~~~~~~lg~~lg~~l~~~v~~~~g~~~~~~~~w~~~~l~~~~~~~~f~~~a~l~~ 560 (597)
...+..+.+..|.+|.+.|+.+.|+....+++++++++.+.+.+....+ ....|++.+++++
T Consensus 365 g~~~~~~~~~~ElfPt~~R~~~~~~~~~~~~i~~~i~~~~~~~~~~~~~------------------~~~~~~i~~~~~~ 426 (451)
T PF00083_consen 365 GWGPLPWIYTAELFPTKVRSTGIGLSYAVGRIGGFIIPFLFPYLFNNLG------------------GWGVFLIFAGVCL 426 (451)
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccc------------------ccccchhhHHHHH
Confidence 4557777888999999999999999999999999999988776554321 0245778888999
Q ss_pred HHHHHHHHhhhcccccccCCCCCc
Q 007580 561 INFCAFLYSAYRYKYRSEQKHGND 584 (597)
Q Consensus 561 l~~~~~~~~~~~~~~~~~~~~~~~ 584 (597)
+..++.+++.+|+|+|+.||.+++
T Consensus 427 i~~i~~~~~lpET~g~~l~ei~~~ 450 (451)
T PF00083_consen 427 IAIIFVYFFLPETKGKTLEEIQEM 450 (451)
T ss_pred HHHhheeEEEeeCCCCCHHHHHhh
Confidence 999999999999999999887664
No 93
>TIGR00901 2A0125 AmpG-related permease.
Probab=99.76 E-value=8.2e-16 Score=161.34 Aligned_cols=161 Identities=13% Similarity=0.101 Sum_probs=121.2
Q ss_pred HHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHhhhhHHHhhcc----cchHHHH-HHHHHHHHHHHHHHHHhhhcccc
Q 007580 88 LSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAY----LGRYWTI-AIFTTIYLAGLTGITLCATMKVF 162 (597)
Q Consensus 88 ~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~lsD~~----~GR~~~~-~~~~~l~~~g~~~~~~~~~~~~~ 162 (597)
+.....+.+.+++|+|.++.++.... .+...+ .+++|+++||+ +||||.+ +.+.++..+....+++...
T Consensus 6 ~~~~~~~~~~~~~g~s~~~~g~~~~~-~~~~~~-~~~~g~~~Dr~~~~~~Grr~~~l~~~~~~~~~~~~~l~~~~~---- 79 (356)
T TIGR00901 6 LVGNTLPYWLRSKNVSLKTIGFFSLV-GLPYSL-KFLWSPLVDTVYLPFFGRRRSWLVLTQVLLLSLLLILSFLVP---- 79 (356)
T ss_pred hHHhHHHHHHHHcCCCHHHHHHHHHH-HHHHHH-HHHHHHHHhcccCCCCCccHHHHHHHHHHHHHHHHHHHcCCc----
Confidence 33444556677899999999988644 334443 88999999994 3999975 5666666666555554311
Q ss_pred CCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhhchhhhhhhhhhccCCCCCchhhhhhhhHHHHHHHHHHHHH
Q 007580 163 MPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGA 242 (597)
Q Consensus 163 ~~~~~~c~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~R~~~~~~~~~~~~lg~ 242 (597)
..+...+....++.+++.+...+...++++|++|+++ |+.+.++...+.++|.
T Consensus 80 ---------------------~~~l~~l~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~------r~~~~~~~~~~~~~G~ 132 (356)
T TIGR00901 80 ---------------------STDLPLLAGLAFLIAFFSATQDIALDAWRLEILSDEE------LGYGSTIYIVGYRAGM 132 (356)
T ss_pred ---------------------chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHhh------hchHHHHHHHHHHHHH
Confidence 0344556666677888888889999999999999988 9999999999999999
Q ss_pred HHHHHHHHHhhhccc--------hHHHHHHHHHHHHHHHHHHHHhcC
Q 007580 243 IVAFTLVVYIQMEHG--------WGSAFGALAIAMGISNMLFFIGTP 281 (597)
Q Consensus 243 ~l~p~i~~~i~~~~g--------w~~~f~i~~~~~~~~~~~~~~~~~ 281 (597)
.+++.+++++....| ||+.|++.++..++..++.++..+
T Consensus 133 ~~~~~l~~~l~~~~g~~~~~~~~wr~~f~i~ai~~l~~~~~~~~~~~ 179 (356)
T TIGR00901 133 LLSGSLALVLASPEFANTGLITLWGYIFFWTALLILPGLLVTLFLAK 179 (356)
T ss_pred HHHHHHHHHHhhhcccccccccccHHHHHHHHHHHHHHHHHHHHhcc
Confidence 999999999988888 999999888876665544443333
No 94
>COG0738 FucP Fucose permease [Carbohydrate transport and metabolism]
Probab=99.74 E-value=4.5e-15 Score=151.07 Aligned_cols=173 Identities=16% Similarity=0.075 Sum_probs=141.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHhhhhHHHhhcccchHHHHHHHHHHHHHH
Q 007580 70 AALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAG 149 (597)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~lsD~~~GR~~~~~~~~~l~~~g 149 (597)
.+..+....|...+. +.....+.+.+++.++++..+++++...+..++.++.+..|++.+| +|+|+.++.+..++++|
T Consensus 14 ~~v~~t~lFfl~G~~-~~l~diLip~l~~~f~ls~~~a~liqfaff~gYf~~~lpa~~~~kk-~gyk~gi~lgL~l~avg 91 (422)
T COG0738 14 AFVLLTSLFFLWGFI-TCLNDILIPHLKEVFDLTYFEASLIQFAFFGGYFIMSLPAGLLIKK-LGYKAGIVLGLLLYAVG 91 (422)
T ss_pred HHHHHHHHHHHHHHH-hhcchhhHHHHHHHhCccHHHHHHHHHHHHHHHHHHhccHHHHHHH-hhhHHHHHHHHHHHHHH
Confidence 444444444555555 5566778899999999999999999999999999999999999999 89999999999999999
Q ss_pred HHHHHHhhhccccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhhchhhhhhhhhhccCCCCCchhhhhhhh
Q 007580 150 LTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDR 229 (597)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~R~~ 229 (597)
..+..-++.. ..+.+++++.++.|.|.+...+...++++.+.++++ -..
T Consensus 92 ~~lF~pAa~~-------------------------~~y~~FL~~lFila~Gi~~LetaaNp~v~~lg~~~~------a~~ 140 (422)
T COG0738 92 AALFWPAASS-------------------------KSYGFFLVALFILASGIGLLETAANPYVTLLGKPES------AAF 140 (422)
T ss_pred HHHHhhhhhh-------------------------hhHHHHHHHHHHHHhhhHHHHhccchHHHHhCCchh------HHH
Confidence 9988755331 567899999999999999999999999999999987 566
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhc-------------------cchHHHHHHHHHHHHHHHHH
Q 007580 230 FFNFFYLSVTVGAIVAFTLVVYIQME-------------------HGWGSAFGALAIAMGISNML 275 (597)
Q Consensus 230 ~~~~~~~~~~lg~~l~p~i~~~i~~~-------------------~gw~~~f~i~~~~~~~~~~~ 275 (597)
-+++....+.+|+.++|.+++++..+ -.|+++|.+.+....+..+.
T Consensus 141 rlnl~q~fn~lGa~~gp~~g~~lils~~~~~~~~~~~~~~~~~~~~~v~~pYl~~~~~lvll~v~ 205 (422)
T COG0738 141 RLNLAQAFNGLGAILGPLLGSSLILSGVALTMSAAQILAIKGADASSVQFPYLILAGLLVLLAVL 205 (422)
T ss_pred HHHHHHHhhhhHHHHHHHHHHHHHHhhhhhccCHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Confidence 67788888899999999999987662 23677776655544443333
No 95
>KOG2504 consensus Monocarboxylate transporter [Carbohydrate transport and metabolism]
Probab=99.71 E-value=9.3e-15 Score=159.02 Aligned_cols=400 Identities=14% Similarity=0.099 Sum_probs=239.4
Q ss_pred HHHHHHHHHHHHHHHHHHH---HHHHHHHHhhCCChHHHHHHHHHHHHHHHHHhhhhHHHhhcccchHHHHHHHHHHHHH
Q 007580 72 LFIFGNEMAERMAYFGLSV---NMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLA 148 (597)
Q Consensus 72 ~~~~~~~~~~~~~~~~~~~---~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~lsD~~~GR~~~~~~~~~l~~~ 148 (597)
|.+.+..|+.++..+++.. .+...+.++++.+..+.+|+.++......+..++.+.+.|| ||.|.+.+.+.++..+
T Consensus 45 WvV~~a~fl~~~~~~g~~~~~Gv~~~~~~~~f~~s~~~~~~i~sl~~~~~~~~gpl~s~l~~r-fg~R~v~i~G~~v~~~ 123 (509)
T KOG2504|consen 45 WVVVFASFLVNLSTDGLINSFGLLFEELMDYFGSSSSQIAWIGSLLLGVYLLAGPLVSALCNR-FGCRTVMIAGGLVAAL 123 (509)
T ss_pred eeeeHhHHHHHHhhhcchheehhhHHHHHHHhCCCccHHHHHHHHHHHHHHHhccHHHHHHhh-cCchHHHHHHHHHHHH
Confidence 4444444555554444432 34567888999999999999999999999999999999999 8999999999999999
Q ss_pred HHHHHHHhhhccccCCCCCcccccccccCCCCCccchhHHHHHHHH-HHHHHhhhchhhhhhhhhhccCCCCCchhhhhh
Q 007580 149 GLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVL-YITGFGAAGIRPCVSSFGADQFDERSKDYKTHL 227 (597)
Q Consensus 149 g~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~l~~~~-~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~R 227 (597)
|+++..++ .+++.+++.. ++.|+|.|........+++.+|..+ |
T Consensus 124 g~~lssF~----------------------------~~i~~l~lt~gvi~G~G~~~~~~paiviv~~YF~kk-------R 168 (509)
T KOG2504|consen 124 GLLLSSFA----------------------------TSLWQLYLTFGVIGGLGLGLIYLPAVVILGTYFEKK-------R 168 (509)
T ss_pred HHHHHHHH----------------------------hhHHHHHHHHHHHhhccchhhhcchhhhhhhHhHHH-------H
Confidence 99999988 4566666554 4679999999999999998777654 8
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHhcCcccccCCCCCchhhHHHHHHHHHHhh
Q 007580 228 DRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGTPLYRHRLPGGSPLTRVAQVLVAAFRKR 307 (597)
Q Consensus 228 ~~~~~~~~~~~~lg~~l~p~i~~~i~~~~gw~~~f~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 307 (597)
+.+.++-..+..+|..+-|.+..++.+..|||+.+++.+.+.+-.++.....++.....++. ... ..+..
T Consensus 169 ~lA~Gia~~GsG~G~~~~~~l~~~l~~~~G~r~~~l~~~~~~l~~~~~~~~~rp~~~~~~~~-----~~~-----~~~~~ 238 (509)
T KOG2504|consen 169 ALATGIAVSGTGVGTVVFPPLLKYLLSKYGWRGALLIFGGISLNVLVAGALLRPLSPPKKPN-----EEK-----DLRNS 238 (509)
T ss_pred HHHHhhhhccCCcceeeHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHcCCCCcCCCch-----hhh-----hhccc
Confidence 99999999999999999999999999999999999998887765555555555533222221 000 00000
Q ss_pred hcccCccccccccccCCCcccccCCcccccCCcchhhHHHhhhhhcccCCCCCC--c--cccchhhhhhhHhHhhhhhHH
Q 007580 308 HAAFSSSELIGLYEVPGKHSAIKGSGKIAHTDDFRCLDKAALELKEDVINPSPW--K--LCTVTQVEEVKTLVRLVPIPA 383 (597)
Q Consensus 308 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~--~--~~~~~~~~~~~~~~~~l~~~~ 383 (597)
....+..... .+ .. ...+...+.+ ...................+- . .+......+ +..+.+ ..
T Consensus 239 ~~~~~~~~~~--~~---~~---~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ll~~-~~fl~~---~~ 305 (509)
T KOG2504|consen 239 AASVESTPKP--VE---LR---ISERDSGLKK-LSLSNLATLKRGPDKWRNSPLQAFLSMLDLSLLKD-PKFLLL---AL 305 (509)
T ss_pred cccccccccc--cc---cc---cccCCCCCCc-ccccchhhhhhCCccccccchhhhhhhhhHHHHcC-chHHHH---HH
Confidence 0000000000 00 00 0000000000 000000000000000000000 0 000011111 111111 01
Q ss_pred HHHHHHHHHhcchhhHHHHH--hhhcccC----------------------CCCCCCChhHHHHHHHHHHHHHHHHHHHH
Q 007580 384 CTIMLNVILTEFLTLSVQQA--YTMNTHM----------------------GHPRGASQLQRVGIGLAVSILSVIWAGIF 439 (597)
Q Consensus 384 ~~~~~~~~~~~~~~~~~~~~--~~~~~~~----------------------~~~~~~~~~~~i~~G~~l~~~~~~~~~~~ 439 (597)
...+....+.....++...+ ...+... .....+.......++++..+++.++....
T Consensus 306 ~~~~~~~g~~~p~~~l~~~~~~~g~~~~~aa~l~Siigi~~i~gRi~~G~laD~~~~~~~~~~~~~ll~~gl~~~~~p~~ 385 (509)
T KOG2504|consen 306 SNLFAYLGFNVPFVYLPSYAKSLGLSSNDAAFLLSIIGVSDIIGRIILGLLADKPGIRALVLFLLTLLIAGLARLFLPFA 385 (509)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhcCCChhhhHHHHHHHHHhhhhhhhhhhhhcCccccchHHHHHHHHHHHHHHHHHHHHh
Confidence 11111111111111111111 1111111 11111223333455555555555444443
Q ss_pred HHHHhHHhhhcCccccccCcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHHHHHHH
Q 007580 440 ERYRRNYAISHGYEFSFLTAMPDLSAYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPDAMKSIGSAYAALAGGLGCFAASI 519 (597)
Q Consensus 440 ~~~~~~~~~~~g~~~~~~~~~~~~s~~~l~~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~gl~~~~~~lg~~lg~~ 519 (597)
.+.+.++..-+++|+..+...........+..+.+.-+.+.|+..++++++..+|+.
T Consensus 386 -----------------------~~~~~l~~~~~~fG~~~g~~~~l~~~i~~~~~g~~~l~~a~Gl~l~~~gi~~l~gpP 442 (509)
T KOG2504|consen 386 -----------------------TTYVGLIVFSILFGFCVGSFSSLTPVILVDLVGLEKLSNAYGLLLLFQGIGALVGPP 442 (509)
T ss_pred -----------------------ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChhhcchHHHHHHHHhHHHHHcCcc
Confidence 355556666678888888888887788999999999999999999999999999999
Q ss_pred HHHHhhhccCCCCCCCCCccccCCCCcchhHHHHHHHHHHHHHHHHHHHhh
Q 007580 520 LNSIIKSVTGNPKKGQPNWLAQNINTGRFDYLYWLLAVLSVINFCAFLYSA 570 (597)
Q Consensus 520 l~~~v~~~~g~~~~~~~~w~~~~l~~~~~~~~f~~~a~l~~l~~~~~~~~~ 570 (597)
+.+.+.+.++ +|+..|.+.+++.+++.+++++..
T Consensus 443 iag~~~d~tg-----------------~Y~~~f~~~g~~~~~s~~~~~~~~ 476 (509)
T KOG2504|consen 443 IAGLLYDITG-----------------NYDHAFYFCGLCFLLSAVLLLILR 476 (509)
T ss_pred cceeeeeccC-----------------CeeeehhhcChHHHHHHHHHHHhH
Confidence 9998777766 357778888888888877666654
No 96
>COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism]
Probab=99.71 E-value=6e-14 Score=140.88 Aligned_cols=173 Identities=18% Similarity=0.146 Sum_probs=149.6
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHhhhhHHHhhcccchHHHHHHHHHHHH
Q 007580 68 WIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYL 147 (597)
Q Consensus 68 ~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~lsD~~~GR~~~~~~~~~l~~ 147 (597)
|..+..+.++.+--+-...++.+ +..-+.+++|+|.+.++.+++.-.+...+..++..+|+.| +|..+.+..+.++.+
T Consensus 11 ~~li~gIvlia~NLR~~itsvgP-LL~~Ir~~~gls~s~aGlLTtLPll~fg~~ap~a~~Lar~-~g~er~l~~~Llli~ 88 (395)
T COG2807 11 LLLLAGIVLIAFNLRPAITSVGP-LLDEIRQDLGLSFSVAGLLTTLPLLAFGLFAPAAPRLARR-FGEERSLFLALLLIA 88 (395)
T ss_pred hHHHHHHHHHHhccchhhhhhhh-hHHHHHHHhcccHHHHHHHHHHHHHHHHHHHhhhHHHHHH-HhhHHHHHHHHHHHH
Confidence 55666666777777777666654 4578899999999999999999999999999999999999 899999999999988
Q ss_pred HHHHHHHHhhhccccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhhchhhhhhhhhhccCCCCCchhhhhh
Q 007580 148 AGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHL 227 (597)
Q Consensus 148 ~g~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~R 227 (597)
+|.++=... +...++.+-.+.|+|.+......++++-+.||++.
T Consensus 89 ~G~~iR~~~-----------------------------~~~~L~~gt~l~G~gIav~nVLLPslIK~~Fpk~~------- 132 (395)
T COG2807 89 AGILIRSLG-----------------------------GLPLLFLGTLLAGAGIAVINVLLPSLIKRDFPKRV------- 132 (395)
T ss_pred HHHHHHhcc-----------------------------cHHHHHHHHHHHHhhHHHHHHhhhHHHHhhcccch-------
Confidence 888776653 34678888899999999999999999999999875
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhhhcc-chHHHHHHHHHHHHHHHHHHHH
Q 007580 228 DRFFNFFYLSVTVGAIVAFTLVVYIQMEH-GWGSAFGALAIAMGISNMLFFI 278 (597)
Q Consensus 228 ~~~~~~~~~~~~lg~~l~p~i~~~i~~~~-gw~~~f~i~~~~~~~~~~~~~~ 278 (597)
+..+++|....++|+++++.+...+.++. |||....+.+...++++++++.
T Consensus 133 ~~mtglYs~sl~~~aaLaa~lavpla~~~~gW~~aL~~WAl~allAl~~WlP 184 (395)
T COG2807 133 GLMTGLYSTSLGAGAALAAALAVPLAQHSGGWRGALGFWALLALLALLIWLP 184 (395)
T ss_pred hhHHhHHHHHHHHHHHHHhhhhhHHHHhhccHHHHHHHHHHHHHHHHHHHhh
Confidence 88999999999999999999999998877 7999999988888777776654
No 97
>COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism]
Probab=99.70 E-value=1.5e-16 Score=162.62 Aligned_cols=180 Identities=22% Similarity=0.222 Sum_probs=152.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHhhhhHHHhhccc-chHH-HHHHHHHHHH
Q 007580 70 AALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYL-GRYW-TIAIFTTIYL 147 (597)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~lsD~~~-GR~~-~~~~~~~l~~ 147 (597)
.+|++++..++..+..|++..|.|+|+.++.|+|..++++..+.|..+...+++++||+|||+| |||. +-++++++.+
T Consensus 253 ~iW~la~a~vfvYivR~gi~dW~p~YL~e~k~~s~~~a~~a~~lfE~agl~G~Ll~GwlSDklfkgrR~p~~~i~~~~i~ 332 (448)
T COG2271 253 LIWLLALANVFVYVVRYGINDWGPLYLSEVKGFSLVKANWAISLFEVAGLPGTLLAGWLSDKLFKGRRGPMALIFMLLIT 332 (448)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHHHHhcCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcccccchHHHHHHHHHH
Confidence 5899999999999999999999999999999999999999999999999999999999999988 7664 4455555555
Q ss_pred HHHHHHHHhhhccccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhhchhhhhhhhhhccCCCCCchhhhhh
Q 007580 148 AGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHL 227 (597)
Q Consensus 148 ~g~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~R 227 (597)
+..+....+ |+ .|..+..+..+.+|+..-+++..+.....|..|.+. -
T Consensus 333 ~~~~~~w~~-------~~-------------------~~~~l~~~~l~~iGf~IyGPqmLiGl~a~e~~pK~A------a 380 (448)
T COG2271 333 ASLVLYWLA-------PN-------------------GSYLLDAILLFIIGFLIYGPQMLIGLAAAEFVPKKA------A 380 (448)
T ss_pred HHHHHHHcC-------CC-------------------ccHHHHHHHHHHHHHHHhhHHHHHHHHHhccccHhh------c
Confidence 566655554 21 356788888899999999999899999999999988 7
Q ss_pred hhHHHHHHHHHHH-HHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHhcC
Q 007580 228 DRFFNFFYLSVTV-GAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGTP 281 (597)
Q Consensus 228 ~~~~~~~~~~~~l-g~~l~p~i~~~i~~~~gw~~~f~i~~~~~~~~~~~~~~~~~ 281 (597)
|++.++..++..+ |+.++....+++.|.+||...|.+..+..+++.+++....+
T Consensus 381 GtA~Gf~Glf~Yl~Ga~~a~~~~g~i~d~~gW~g~Fi~~~~~a~l~~lll~~~~~ 435 (448)
T COG2271 381 GTATGFVGLFAYLIGAALAGLPLGYIADTWGWDGGFIVLSIAALLAILLLLPVWN 435 (448)
T ss_pred cchhchhhhHHHHhhHHhcCCcceeeEecCCCcchHHHHHHHHHHHHHHHHHHHh
Confidence 7788887777777 99999999999999999999999888877777666555444
No 98
>KOG3764 consensus Vesicular amine transporter [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.69 E-value=2.9e-15 Score=151.41 Aligned_cols=151 Identities=13% Similarity=0.065 Sum_probs=137.2
Q ss_pred hhCCChHHHHHHHHHHHHHHHHHhhhhHHHhhcccchHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCcccccccccCC
Q 007580 99 VMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGS 178 (597)
Q Consensus 99 ~~~~s~~~a~~~~~~~~~~~~~~~~~~G~lsD~~~GR~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~c~~~~~~~~~ 178 (597)
.++-++++.|++...+.+...+..++.|.+.|| +|+|-.++++.++....++++++.
T Consensus 100 ~~~~e~~~iG~LFaskA~~qllvnp~~G~l~~~-iGy~ipm~~Gl~vmf~sTilFafg---------------------- 156 (464)
T KOG3764|consen 100 SLDRENTQIGLLFASKALVQLLVNPFFGNLIDR-IGYKIPMVAGLFVMFLSTILFAFG---------------------- 156 (464)
T ss_pred CccccccchhHHHHHHHHHHHHhcccchhhHHH-hccccHHHHHHHHHHHHHHHHHHc----------------------
Confidence 355677889999999999999999999999999 899999999999999999999987
Q ss_pred CCCccchhHHHHHHHHHHHHHhhhchhhhhhhhhhccCCCCCchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhccch
Q 007580 179 CEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGW 258 (597)
Q Consensus 179 ~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~R~~~~~~~~~~~~lg~~l~p~i~~~i~~~~gw 258 (597)
.++.+++++|.++|+|.+....+..++++|.||+++. |++.+|+.-.+..+|-.+||.++|.+.+..|.
T Consensus 157 ------~sy~~l~vAR~LQgvgsA~~~tsglamlAd~f~~d~e-----r~~vmGialgfislG~lvgPpfGGilYe~~Gk 225 (464)
T KOG3764|consen 157 ------NSYPMLFVARSLQGVGSAFADTSGLAMLADVFPEDNE-----RGSVMGIALGFISLGVLVGPPFGGILYEFAGK 225 (464)
T ss_pred ------chhHHHHHHHHHhhhhHHHHHhhhHHHHHHHcccchh-----hhHHHHHHHHHHhccceecCCcccchHhhcCC
Confidence 5678999999999999999999999999999998863 89999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCcc
Q 007580 259 GSAFGALAIAMGISNMLFFIGTPLY 283 (597)
Q Consensus 259 ~~~f~i~~~~~~~~~~~~~~~~~~~ 283 (597)
+.+|.+.++++++-.++-++..+..
T Consensus 226 ~aPFlVL~~v~Lld~~L~l~vi~p~ 250 (464)
T KOG3764|consen 226 SAPFLVLAIVLLLDGALQLLVIEPT 250 (464)
T ss_pred cCcHHHHHHHHHHHHHHHHheeCcc
Confidence 9999999998888776666655543
No 99
>KOG0252 consensus Inorganic phosphate transporter [Inorganic ion transport and metabolism]
Probab=99.69 E-value=3.1e-16 Score=160.91 Aligned_cols=139 Identities=17% Similarity=0.159 Sum_probs=105.1
Q ss_pred CChHHHHHHHHHHHHHHHHHhhhhHHHhhcccchHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCcccccccccCCCCC
Q 007580 102 KSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEP 181 (597)
Q Consensus 102 ~s~~~a~~~~~~~~~~~~~~~~~~G~lsD~~~GR~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~ 181 (597)
.++...+.+..+-.++..+|+++.||++|+ +|||+++...+++.+++++.++++. |..
T Consensus 81 ~ps~i~~~Vn~~A~vGti~GQl~FG~lgD~-~GRK~vYG~~liImIi~t~~~~~s~---------------------~~~ 138 (538)
T KOG0252|consen 81 YPSGVLALVNAAALVGTIFGQLFFGWLGDK-FGRKKVYGKELIIMIICSALSGLSV---------------------GTT 138 (538)
T ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHHHhh-hcchhhhhHHHHHHHHHHHHhccCC---------------------CCC
Confidence 556677788888899999999999999998 8999999999999999999777652 222
Q ss_pred ccchhHHHHHHHHHHHHHhhhchhhhhhhhhhccCCCCCchhhhhhhhHHHHHHHHHHH----HHHHHHHHHHHhhhc--
Q 007580 182 AKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTV----GAIVAFTLVVYIQME-- 255 (597)
Q Consensus 182 ~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~R~~~~~~~~~~~~l----g~~l~p~i~~~i~~~-- 255 (597)
+...-+.++...|+++|+|.|+=+|+..++.+|....+. |+...+.......+ |+.++-++.+-+...
T Consensus 139 ~~~~~m~~L~~~R~~LGiGIGGDYPlSAtI~SE~an~~~------RGa~iaavFa~Qg~GilaG~ivt~Iv~~~fe~~~~ 212 (538)
T KOG0252|consen 139 SPLGVMMTLCFFRFLLGIGIGGDYPLSATIMSESANKKT------RGAFIAAVFAMQGFGILAGGIVALIVSAIFEKIFN 212 (538)
T ss_pred CCcchhhHHHHHHHHhhccccCCCcchHHHhhhhhhhcc------ccceeEEEEEecchhHhhccHHHHHHHHHHhccCC
Confidence 222456788999999999999999999999999998888 88887775444444 444443333322111
Q ss_pred ---------cchHHHHHHHHHH
Q 007580 256 ---------HGWGSAFGALAIA 268 (597)
Q Consensus 256 ---------~gw~~~f~i~~~~ 268 (597)
.=||..|.+.++.
T Consensus 213 ~~~~~~~ld~vWRl~~glg~vp 234 (538)
T KOG0252|consen 213 GPSTYPHLDGVWRIIFGLGAVP 234 (538)
T ss_pred CCCCchHHHHHHHHHHHHHHHH
Confidence 2399888766553
No 100
>PRK09848 glucuronide transporter; Provisional
Probab=99.69 E-value=4.6e-14 Score=153.05 Aligned_cols=156 Identities=11% Similarity=0.038 Sum_probs=102.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHhhhhHHHhhcc---cchHHHH-HHHHHHH
Q 007580 71 ALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAY---LGRYWTI-AIFTTIY 146 (597)
Q Consensus 71 ~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~lsD~~---~GR~~~~-~~~~~l~ 146 (597)
.+.-.+..+..++.+..+.++++.|+++.+|++..+++.+.....+..++..++.|+++||. +||||.+ .++.+..
T Consensus 10 ~~~yg~g~~~~~~~~~~~~~~l~~y~~~~~gl~~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~~~~~Gr~~~~~~~~~~~~ 89 (448)
T PRK09848 10 IVGYSLGDVANNFAFAMGALFLLSYYTDVAGVGAAAAGTMLLLVRVFDAFADVFAGRVVDSVNTRWGKFRPFLLFGTAPL 89 (448)
T ss_pred HHhhccchHHhHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhhhheeeeecCCCCCcCchHHHHHHHHHH
Confidence 33344455666777667778888999999999999999999999999999999999999992 3777755 4555544
Q ss_pred HHHHHHHHHhhhccccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhhchhhhhhhhhhccCCCCCchhhhh
Q 007580 147 LAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTH 226 (597)
Q Consensus 147 ~~g~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~ 226 (597)
.+...++..... ...+ ......+++...+.+++.+...+...++..++..+.++
T Consensus 90 ~~~~~~~~~~~~--~~~~-------------------~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~----- 143 (448)
T PRK09848 90 MIFSVLVFWVPT--DWSH-------------------SSKVVYAYLTYMGLGLCYSLVNIPYGSLATAMTQQPQS----- 143 (448)
T ss_pred HHHHHHHHhCcC--CCCc-------------------chHHHHHHHHHHHHHHHHHHhcccHhhhhhhhcCCHHH-----
Confidence 443333321100 0000 01233445555677888888888888877777665332
Q ss_pred hhhHHHHHHHH-----HHHHHHHHHHHHHHh
Q 007580 227 LDRFFNFFYLS-----VTVGAIVAFTLVVYI 252 (597)
Q Consensus 227 R~~~~~~~~~~-----~~lg~~l~p~i~~~i 252 (597)
|.+..++..++ .+++..++|.+.+..
T Consensus 144 r~~~~~~r~~~~~~~~~~~~~~~~p~i~~~~ 174 (448)
T PRK09848 144 RARLGAARGIAASLTFVCLAFLIGPSIKNSS 174 (448)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 66666554432 345666667666543
No 101
>TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family. RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes.
Probab=99.69 E-value=1.7e-13 Score=145.74 Aligned_cols=177 Identities=12% Similarity=-0.012 Sum_probs=122.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChHHHHHH--HHHHHHHHHHHhhhh-HHHhhcccchHHHHHHHHHHH-
Q 007580 71 ALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNA--VNNFLGISQASSVLG-GFLADAYLGRYWTIAIFTTIY- 146 (597)
Q Consensus 71 ~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~--~~~~~~~~~~~~~~~-G~lsD~~~GR~~~~~~~~~l~- 146 (597)
...+....+.+.+.+....+.+|.|++ +.|.+.++.+.. .........+..++. ++++|| +||||.+++...+.
T Consensus 3 ~~~~~~ly~~~g~~~~~~~p~lp~~l~-~~g~~~~~iGl~~~~~l~~~~~~l~~p~~~~~~~~~-~g~r~~~i~~~~~~~ 80 (390)
T TIGR02718 3 VITLGLLYLSQGIPIGLAMDALPTLLR-EDGAPLTALAFLPLVGLPWVVKFLWAPLVDNWWSWR-LGRRRSWVLPMQCLV 80 (390)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHH-HcCCCHHHHHHHHHHHHHHHHHHHHHHHHhcccccc-CCcchhHHHHHHHHH
Confidence 455666778888887777788888875 569999999986 345556665555555 678998 89999976665332
Q ss_pred HHHHHHHHHhhhccccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhhchhhhhhhhhhccCCCCCchhhhh
Q 007580 147 LAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTH 226 (597)
Q Consensus 147 ~~g~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~ 226 (597)
.+....+.... + . ......++...++.++..+...+...++..|..++++
T Consensus 81 ~~~~~~~~~~~--~----~------------------~~~~~~~~~~~~~~~~~~a~~d~~~d~~~~~~~~~~~------ 130 (390)
T TIGR02718 81 SACLASLALVG--P----D------------------VAGAGWAVGLLACASLASATQDIATDGMAAEHFNGRT------ 130 (390)
T ss_pred HHHHHHHHcCC--c----c------------------hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHhh------
Confidence 21222222110 0 0 0112233444455667777777778888888887777
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHh
Q 007580 227 LDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIG 279 (597)
Q Consensus 227 R~~~~~~~~~~~~lg~~l~p~i~~~i~~~~gw~~~f~i~~~~~~~~~~~~~~~ 279 (597)
++...+....+..+|..+|+.+.+++.++.|||..|++.++..++..+..+..
T Consensus 131 ~~~~~~~~~~g~~lG~~~g~~~~~~l~~~~gw~~~f~~~a~l~~~~~~~~~~~ 183 (390)
T TIGR02718 131 LAKGNAVQIAGVMIGFFGGGAGTLVLFGKFGQRPAFLLVACVPLASLVCVLWL 183 (390)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHc
Confidence 78888888888899999999999999999999999999887766555544443
No 102
>TIGR00805 oat sodium-independent organic anion transporter. Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange.
Probab=99.68 E-value=1e-14 Score=163.78 Aligned_cols=208 Identities=15% Similarity=0.112 Sum_probs=157.6
Q ss_pred CCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHhhhhHHHhhcccchHHHHHHHHH
Q 007580 65 TGGWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTT 144 (597)
Q Consensus 65 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~lsD~~~GR~~~~~~~~~ 144 (597)
..+++.+.+.+...++......++.....+.+.+++++++.+.+++.+.+.++..++.++.|+++|| +|||+.+.++.+
T Consensus 28 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~l~~iek~F~lss~~~G~i~s~~~i~~~~~~i~v~~~~~r-~~r~~~i~~g~l 106 (633)
T TIGR00805 28 FSKIKVFSLLLTCAQLQGLLYNGLVNSSLTTIERRFKLSTSSSGLINGSYEIGNLLLIIFVSYFGTK-LHRPIVIGIGCA 106 (633)
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHhhchhhhhhhCCCCCcceeeeehhhHHHHHHHHHHHHhhcc-cCcceEEEecHH
Confidence 3556656555554555555556777777888999999999999999999999999999999999999 899999999999
Q ss_pred HHHHHHHHHHHhhhccc-cC-------------CCCCcccccc-------cccCCCCCcc--chhHHHHHHHHHHHHHhh
Q 007580 145 IYLAGLTGITLCATMKV-FM-------------PNQDNCDRIS-------QLLGSCEPAK--SWQMLYLYTVLYITGFGA 201 (597)
Q Consensus 145 l~~~g~~~~~~~~~~~~-~~-------------~~~~~c~~~~-------~~~~~~~~~~--~~~~~~l~~~~~l~g~g~ 201 (597)
++.+|.++++++..+.. .. .+.+.|..++ ++...|.... ...+.+++++|+++|+|.
T Consensus 107 l~~lg~ll~alphf~~~~y~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~GiG~ 186 (633)
T TIGR00805 107 IMGLGSFLLSLPHFLSGRYSYSTTVSSTGNLSSANSFLCMENLTQALRPTQCPSECQKQHKESLMWLLFLVSQLLRGIGA 186 (633)
T ss_pred HHHHHHHHHhChHHhcCCccccccccccccccccccccccCCCCCCccccccccccccccCCCceehhhHHHHHHHhccC
Confidence 99999999988642110 00 0112342100 0011233322 124567889999999999
Q ss_pred hchhhhhhhhhhccCCCCCchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhcc----------------------chH
Q 007580 202 AGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEH----------------------GWG 259 (597)
Q Consensus 202 g~~~~~~~~~~ad~~~~~~~~~~~~R~~~~~~~~~~~~lg~~l~p~i~~~i~~~~----------------------gw~ 259 (597)
+...+...+++.|.+|+++ |+..+++++....+|+++|+++++++.+.+ +|+
T Consensus 187 ~~~~~~~~~~i~d~~~~~~------~~~~~~i~~~~~~iG~~lG~llgg~l~~~~~d~~~~~~~~~~l~~~dprWiGaWw 260 (633)
T TIGR00805 187 TPIFPLGISYIDDFAKSKN------SPLYIGILESIAVFGPAFGYLLGSFCLQIYVDTGSVNTEDVILTPTDPRWIGAWW 260 (633)
T ss_pred CcchhcCchhhhccCCccc------cHHHHHHHHHHHHhhhHHHHHHHHHHHhcccccccCCCCCCCCCCCCccHHHHHH
Confidence 9999999999999999999 999999999999999999999999987542 277
Q ss_pred HHHHHHHHHHHHHHHHHHHh
Q 007580 260 SAFGALAIAMGISNMLFFIG 279 (597)
Q Consensus 260 ~~f~i~~~~~~~~~~~~~~~ 279 (597)
.+|++.+++.++..+.+++.
T Consensus 261 l~Fli~g~l~~l~~v~l~~~ 280 (633)
T TIGR00805 261 IGFLICGGVALLTSIPFFFF 280 (633)
T ss_pred HHHHHHHHHHHHHHHHHHhC
Confidence 78888777666555444443
No 103
>KOG2615 consensus Permease of the major facilitator superfamily [General function prediction only]
Probab=99.68 E-value=1.3e-14 Score=145.96 Aligned_cols=116 Identities=15% Similarity=0.067 Sum_probs=104.8
Q ss_pred ChHHHHHHHHHHHHHHHHHhhhhHHHhhcccchHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCcccccccccCCCCCc
Q 007580 103 SFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPA 182 (597)
Q Consensus 103 s~~~a~~~~~~~~~~~~~~~~~~G~lsD~~~GR~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~ 182 (597)
+..-+|.+-+.|.+...+.++++|.+||+ +|||+++.+|.+..++...+.+.+
T Consensus 66 ~~~yaGflGSsF~ilQ~~sS~~~G~~SD~-yGRkpvll~c~~~va~s~ll~~~S-------------------------- 118 (451)
T KOG2615|consen 66 SVFYAGFLGSSFSILQFISSPLWGCLSDR-YGRKPVLLACLIGVALSYLLWALS-------------------------- 118 (451)
T ss_pred cchhhhhHhhHHHHHHHHhhhhhhhhhhh-hCchHHHHHHHHHHHHHHHHHHHH--------------------------
Confidence 44567888899999999999999999999 799999999999999888888876
Q ss_pred cchhHHHHHHHHHHHHHhhhchhhhhhhhhhccCCCCCchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhh
Q 007580 183 KSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQM 254 (597)
Q Consensus 183 ~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~R~~~~~~~~~~~~lg~~l~p~i~~~i~~ 254 (597)
.|+..++++|++.|+.-|-. ..+.++++|.+++++ |+.+++....+..+|..+||+++||+.+
T Consensus 119 --~~F~afv~aR~l~Gi~kgnl-~v~rAiisdV~sek~------r~l~ms~v~~a~~lGfilGPmIGgyla~ 181 (451)
T KOG2615|consen 119 --RNFAAFVLARFLGGIFKGNL-SVIRAIISDVVSEKY------RPLGMSLVGTAFGLGFILGPMIGGYLAQ 181 (451)
T ss_pred --HHHHHHHHHHHhhhhccCch-HHHHHHHHhhcChhh------ccceeeeeehhhhcchhhcchhhhHHHh
Confidence 67877888899999988765 567889999999999 9999999999999999999999999987
No 104
>TIGR00788 fbt folate/biopterin transporter. The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity.
Probab=99.67 E-value=2.2e-14 Score=156.06 Aligned_cols=173 Identities=9% Similarity=-0.014 Sum_probs=129.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHhhhhHHHhhcccc-----hHHHHHHHHH
Q 007580 70 AALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLG-----RYWTIAIFTT 144 (597)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~lsD~~~G-----R~~~~~~~~~ 144 (597)
...++....+.+.+. +.+...+.+++.+++|++.++.+...+...+...+-++ +|+++|| ++ ||+.++++.+
T Consensus 27 ~~~~~~~~y~~qGl~-~l~~~~~~~~l~~~lg~s~~~i~~~~sl~~lpw~~K~l-~g~l~D~-~~i~G~rRr~~l~~~~~ 103 (468)
T TIGR00788 27 VLAIGLQVLFVKGIA-GLMRLPLSPMLTDDLGLDGARYQRLVGLSSLGWALKPF-AGVMSDT-FPLFGYTKRWYLVLSGL 103 (468)
T ss_pred HHHHHHHHHHHhhHH-HHhhhhhhHHHHHhcCCCHHHHHHHHHHHHHHHHHHHH-HHHHHHh-cCCCCccchHHHHHHHH
Confidence 344555577888888 77788888999999999999999899988888888766 9999999 67 7777777766
Q ss_pred HHHHHHHHHHHhhhccccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhhchhhhhhhhhhccCCCCCchhh
Q 007580 145 IYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYK 224 (597)
Q Consensus 145 l~~~g~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~ 224 (597)
+.. ......++.. + .......+.+++.+++.+....+..++..|..+ ++++.
T Consensus 104 l~~-~~~~~~l~~~-----~--------------------~~~~~~~~~~~l~~~~~a~~dv~~da~~~e~~~-~~~~~- 155 (468)
T TIGR00788 104 LGS-AILYGLLPGK-----V--------------------SSAKVAAAFIFLAALAKALYDVLVDSLYSERIR-ESPSA- 155 (468)
T ss_pred HHH-HHHHHhcccc-----c--------------------chHHHHHHHHHHHHHHHHHHHHhHHHHHhhhhh-cCCCc-
Confidence 542 1222222210 0 123334447888999999999999999999999 44221
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHH
Q 007580 225 THLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNML 275 (597)
Q Consensus 225 ~~R~~~~~~~~~~~~lg~~l~p~i~~~i~~~~gw~~~f~i~~~~~~~~~~~ 275 (597)
++...++.+...++|..+|+.++|++.+..+|+..|++.+...++..+.
T Consensus 156 --~~~~~s~~~~~~~~G~~vg~~l~G~l~~~~~~~~~f~~~a~l~ll~~~~ 204 (468)
T TIGR00788 156 --GPSLVSWMWGASATGGLISSLLGGPLLDKTLTRILFLITAALLLLQLFV 204 (468)
T ss_pred --CCCeeeHHHHHHHHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHH
Confidence 4445666667778999999999999999999999999888776665433
No 105
>KOG0253 consensus Synaptic vesicle transporter SV2 (major facilitator superfamily) [General function prediction only]
Probab=99.67 E-value=1.6e-14 Score=144.12 Aligned_cols=146 Identities=13% Similarity=0.017 Sum_probs=117.3
Q ss_pred HHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHhhhhHHHhhcccchHHHHHHHHHHHHHHHHHHHHhhhccccCCC
Q 007580 86 FGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPN 165 (597)
Q Consensus 86 ~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~lsD~~~GR~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~ 165 (597)
......+.+-+....|.+..+..++......+..++...+|.++|+ +|||+.+.+..+...+.-++-..+
T Consensus 94 ~m~~s~i~~~l~~~w~~s~~q~~llt~~v~~gmllga~~w~l~~d~-~grr~~f~~T~l~t~v~~~is~~s--------- 163 (528)
T KOG0253|consen 94 MMLLSLILPALDEVWGPSEGQAPLLTLSVFLGMLVGAMVWGLSADT-IGRRKGFNLTFLVTGVFGVISGAS--------- 163 (528)
T ss_pred HHHHHHHHHHHHhhhchhhhhhhHHHHHHHhhhhhhhhhhheehhh-hhcchhhhhhHHHHHHHHHhhcCC---------
Confidence 3344444555677788888899999999999999999999999999 899999888877665555444443
Q ss_pred CCcccccccccCCCCCccchhHHHHHHHHHHHHHhhhchhhhhhhhhhccCCCCCchhhhhhhhHHHHHHHHHHHHHHHH
Q 007580 166 QDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVA 245 (597)
Q Consensus 166 ~~~c~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~R~~~~~~~~~~~~lg~~l~ 245 (597)
+|+..+++.|.+.|+|.|+ .|...++-.|..|... |..-.-.. ....+|.++.
T Consensus 164 -------------------pnf~~L~~f~~l~~~g~gg-~pv~~~~yle~lp~~~------r~~~~V~~-~~waig~v~e 216 (528)
T KOG0253|consen 164 -------------------PNFASLCVFRALWGFGVGG-LPVDSAIYLEFLPSSH------RWLLTVMS-FFWAIGQVFE 216 (528)
T ss_pred -------------------CCeehhhHHHHHHhccCCC-ccHhHHHHHHhccCcC------CCcchhHH-HHHHHHHHHH
Confidence 6888999999999999999 8999999999999888 77776665 6677888888
Q ss_pred HHHHHHhhhccchHHHHHHHHHH
Q 007580 246 FTLVVYIQMEHGWGSAFGALAIA 268 (597)
Q Consensus 246 p~i~~~i~~~~gw~~~f~i~~~~ 268 (597)
..+.=.+..++||||-.......
T Consensus 217 a~law~vm~~~gwr~~l~~~~~p 239 (528)
T KOG0253|consen 217 ALLAWGVMSNFGWRYLLFTSSTP 239 (528)
T ss_pred HHHHHHHHHhhhHHHHHHHHHhH
Confidence 87776677788999977665543
No 106
>PRK10429 melibiose:sodium symporter; Provisional
Probab=99.67 E-value=6.6e-14 Score=152.90 Aligned_cols=178 Identities=10% Similarity=-0.006 Sum_probs=122.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHhhhhHHHhh----cccch-HHHHHHHHHHHHHHH
Q 007580 76 GNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLAD----AYLGR-YWTIAIFTTIYLAGL 150 (597)
Q Consensus 76 ~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~lsD----~~~GR-~~~~~~~~~l~~~g~ 150 (597)
+..+..++....+..+++.|+++.+|++...++.+.....+.-++..|+.|+++| | ||| |+.++++.+...++.
T Consensus 13 ~g~~~~~~~~~~~~~~l~~yyt~v~Gls~~~vg~i~~i~ri~dai~dp~~G~lsD~t~sr-~Grrrp~il~g~i~~~i~~ 91 (473)
T PRK10429 13 FGAFGKDFAIGIVYMYLMYYYTDVVGLSVGLVGTLFLVARIWDAINDPIMGWIVNNTRSR-WGKFKPWILIGTLANSVVL 91 (473)
T ss_pred cchhHHhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhchheeehhcCCCC-CCCcchhHhhhhHHHHHHH
Confidence 3445556666777888999999999999999999999999999999999999999 5 698 455556776666666
Q ss_pred HHHHHhhhccccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhhchhhhhhhhhhccCC-CCCchhhhhhhh
Q 007580 151 TGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFD-ERSKDYKTHLDR 229 (597)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~~~-~~~~~~~~~R~~ 229 (597)
.++... +.. + .......+++...+.+++.........++.+|+.+ +++ |.+
T Consensus 92 ~llf~~---p~~-~------------------~~~~~~~~~~~~~l~~~~~t~~~ip~~al~~~lt~~~~e------R~~ 143 (473)
T PRK10429 92 FLLFSA---HLF-E------------------GTAQYVFVCVTYILWGMTYTIMDIPFWSLVPTLTLDKRE------REQ 143 (473)
T ss_pred HHHHcC---CCC-C------------------ccHHHHHHHHHHHHHHHHHHHHcchHHhhhHHhCCCHHH------HHH
Confidence 555432 100 0 00234445555566788888888889999999984 555 999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhh-------ccchHHHHHHHHHHHHHHHHHHHHhcCc
Q 007580 230 FFNFFYLSVTVGAIVAFTLVVYIQM-------EHGWGSAFGALAIAMGISNMLFFIGTPL 282 (597)
Q Consensus 230 ~~~~~~~~~~lg~~l~p~i~~~i~~-------~~gw~~~f~i~~~~~~~~~~~~~~~~~~ 282 (597)
..++-....++|+.+.+.+...+.+ ..+|++...+.+++.++..++.+...++
T Consensus 144 l~~~~~~~~~ig~~~~~~~~~~~~~~~g~~~~~~g~~~~~~i~~~~~~~~~~~~~~~~~e 203 (473)
T PRK10429 144 LVPYPRFFASLAGFVTAGFTLPFVNYVGGGDRGFGFQMFTLVLIAFFIVSTIITLRNVHE 203 (473)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhhHHHHHHHHHHHHHHHHHHHHcCcee
Confidence 8888666677776665555443321 2356766666666555544444444443
No 107
>PRK09669 putative symporter YagG; Provisional
Probab=99.66 E-value=9.9e-14 Score=150.31 Aligned_cols=178 Identities=11% Similarity=0.078 Sum_probs=123.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHhhhhHHHhhcc---cchHHH-HHHHHHHHHHHHH
Q 007580 76 GNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAY---LGRYWT-IAIFTTIYLAGLT 151 (597)
Q Consensus 76 ~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~lsD~~---~GR~~~-~~~~~~l~~~g~~ 151 (597)
+..+..++....+..+++.|+++++|++...++.+.....+.-++..|+.|+++||. +||||. ++.+.+...+..+
T Consensus 16 ~g~~~~~~~~~~~~~~l~~~~t~~~gls~~~~g~i~~i~~i~dai~dp~~G~lsD~~~~r~Grrrp~il~~~~~~~i~~~ 95 (444)
T PRK09669 16 LGDTACNLVWQTVMLFLAYFYTDVFGLSAAIMGTMFLVVRVLDAVTDPLMGALVDRTRTRHGQFRPYLLWFAIPFGVVCL 95 (444)
T ss_pred chhhhhhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHcccceeeEeeecCCCCCCCcchhHHHHHHHHHHHHH
Confidence 333455555566778899999999999999999999999999999999999999983 577544 5566666666655
Q ss_pred HHHHhhhccccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhhchhhhhhhhhhccCCC-CCchhhhhhhhH
Q 007580 152 GITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDE-RSKDYKTHLDRF 230 (597)
Q Consensus 152 ~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~~~~-~~~~~~~~R~~~ 230 (597)
++... |.... ......+++...+.+.+.........++.+|+.++ ++ |.+.
T Consensus 96 l~f~~---p~~~~-------------------~~~~~~~~~~~~l~~~~~t~~~ip~~al~~~~t~~~~e------R~~l 147 (444)
T PRK09669 96 LTFYT---PDFGA-------------------TGKIIYACVTYILLSLVYTAINVPYCAMPGAITNDPRE------RHSL 147 (444)
T ss_pred HHHhC---CCCCc-------------------chHHHHHHHHHHHHHHHHHhhcchHHHhHHHhcCCHHH------HHHH
Confidence 44332 10000 13445566666667777777777888999998854 44 8888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhh-------ccchHHHHHHHHHHHHHHHHHHHHhcC
Q 007580 231 FNFFYLSVTVGAIVAFTLVVYIQM-------EHGWGSAFGALAIAMGISNMLFFIGTP 281 (597)
Q Consensus 231 ~~~~~~~~~lg~~l~p~i~~~i~~-------~~gw~~~f~i~~~~~~~~~~~~~~~~~ 281 (597)
.++.....++|..+++.+...+.. ..||+..+.+.+++.++..++.+...+
T Consensus 148 ~~~r~~~~~~G~~i~~~~~~pl~~~~~~~~~~~g~~~~~~i~~ii~~v~~~~~~~~~~ 205 (444)
T PRK09669 148 QSWRFALSFIGGLIVSVIALPLVDILGKGDEQKGYFYAMMVMGLLGVVLFFCCFFMTK 205 (444)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhhHHHHHHHHHHHHHHHHHHHhCCeE
Confidence 888887888887777665443322 346887777777665555444444333
No 108
>PF03825 Nuc_H_symport: Nucleoside H+ symporter
Probab=99.63 E-value=1.3e-12 Score=138.62 Aligned_cols=117 Identities=12% Similarity=0.044 Sum_probs=87.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHhhhhHHHhhcccchHHHHHHHHHHHHHHHHHH
Q 007580 74 IFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGI 153 (597)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~lsD~~~GR~~~~~~~~~l~~~g~~~~ 153 (597)
+....|+..+.+-...+++++|+++ .|+|..+.|.+.+...+...+.+++.|+++||+..+||.+.+..++..+.....
T Consensus 7 Ls~~~f~~f~~~G~~~p~~~~~L~~-~G~s~~qIG~l~a~~~~~~i~~~~~~g~~aDr~~~~~~~l~~~~l~~~~~~~~~ 85 (400)
T PF03825_consen 7 LSLMYFLYFFAYGAFLPYLPLYLES-RGFSGTQIGILLAVGPLARIVSPPFWGAIADRFGSAKRILALLSLLSALALLLL 85 (400)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhHHHHHHHHHHHHHHHHHHH
Confidence 4555566666666677888999976 679999999999999999999999999999994346777777666555544333
Q ss_pred HHhhhccccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhhchhhhhhhhhhccCCCC
Q 007580 154 TLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDER 219 (597)
Q Consensus 154 ~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~~~~~ 219 (597)
... .+...+++..++..+......|...++.-+...++
T Consensus 86 ~~~----------------------------~~f~~~~~~~~l~~~~~~p~~pl~dsi~~~~~~~~ 123 (400)
T PF03825_consen 86 AFS----------------------------SSFWWLFVIMLLFSFFFSPTMPLSDSIALSYLGDR 123 (400)
T ss_pred HHh----------------------------ccHHHHHHHHHHHHHHHccHHHHHHHHHHHHcccc
Confidence 332 34556666677778888888888888887776543
No 109
>PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) []. The lacY family of Escherichia coli and Klebsiella pneumoniae are proton/beta-galactoside symporters, which, like most sugar transporters, are integral membrane proteins with 12 predicted transmembrane (TM) regions. Also similar to the lacY family are the rafinose (rafB) and sucrose (cscB) permeases from E. coli []. This entry also includes bacterial phenylproprionate permease.; PDB: 1PV7_B 1PV6_A 2Y5Y_B 2CFQ_A 2V8N_B 2CFP_A.
Probab=99.62 E-value=1.8e-13 Score=143.28 Aligned_cols=369 Identities=11% Similarity=0.028 Sum_probs=197.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHhhhhHHHhhcccchHHHHHHHHHHHHH-
Q 007580 70 AALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLA- 148 (597)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~lsD~~~GR~~~~~~~~~l~~~- 148 (597)
..+...+..|+..+.+....++.+.+++++.|++.++.|.+.+...+...+.+|+.|.++|| +|.||-++....+..+
T Consensus 8 ~~~~~s~~~f~~Ff~~gi~~pF~~iWL~~~~GLs~~~iG~i~s~~~~~~l~~qp~~G~i~Dk-lg~kK~Ll~~i~~l~~l 86 (412)
T PF01306_consen 8 NYWWLSLFYFFYFFIWGIFLPFFPIWLTQVAGLSGTEIGIIFSAGSLFALLAQPVYGFISDK-LGLKKHLLWFIAILLLL 86 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHTHHHHHHHHHH-CTTCSHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHccccCCCHHHHHHHHHHHHHHHHHHHHhHHHhcch-hhhhHHHHHHHHHHHHH
Confidence 56666777777777777788999999999999999999999999999999999999999999 8966655444332222
Q ss_pred -HHHHH-HHhhhccccCCCCCcccccccccCCCCCccchhH-HHHHHHHHHHHHhhhchhhhhhhhhhccCCCCCchhhh
Q 007580 149 -GLTGI-TLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQM-LYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKT 225 (597)
Q Consensus 149 -g~~~~-~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~-~~l~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~ 225 (597)
+-... ... |.++ .|. ...+++-...+++..+..|...++..+..-..
T Consensus 87 ~~pff~~v~~---pll~---------------------~n~~lg~iig~i~l~~~f~~~~~~~Ea~~er~sr~~------ 136 (412)
T PF01306_consen 87 FGPFFIYVFG---PLLQ---------------------SNFWLGAIIGGIYLGLVFNAGVPLSEAYAERVSRRN------ 136 (412)
T ss_dssp CHHHHHHTHH---HHHH---------------------TT-HHHHHHTTTTTTTTTTTHHHHHHHHHHHHHHHH------
T ss_pred HHHHHHHHHH---HHHH---------------------HHHHHHHHHHHHHHHHHHcccchHHHHHHHHHHHHh------
Confidence 22221 111 1111 111 11122212233444444455555543322111
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHhcCcccccCCCCCchhhHHHHHHHHHH
Q 007580 226 HLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGTPLYRHRLPGGSPLTRVAQVLVAAFR 305 (597)
Q Consensus 226 ~R~~~~~~~~~~~~lg~~l~p~i~~~i~~~~gw~~~f~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 305 (597)
+.=+|-......+|.+++..++|++.+ .+-...||+.....++..++.+..++...++.+..+...
T Consensus 137 --~feYG~~R~wGSig~ai~s~~~G~L~~-i~p~~~fwi~s~~~~il~lll~~~~~~~~~~~~~~~~~~----------- 202 (412)
T PF01306_consen 137 --GFEYGRARMWGSIGFAIASLLAGILFN-INPNIIFWIASAAAIILLLLLLLLKPDVPPQAEVADALG----------- 202 (412)
T ss_dssp --SS-HHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHSS---SSSSS-SSTTSS-----------
T ss_pred --cCCcchHHHHhhHHHHHHHHHhheeee-eCccHHHHHHHHHHHHHHHHHHHcCCcCchhhhhhcccc-----------
Confidence 111222344566888899999998876 466778887665544444443333322111100000000
Q ss_pred hhhcccCccccccccccCCCcccccCCcccccCCcchhhHHHhhhhhcccCCCCCCccccchhhhhhhHhHhhhhhHHHH
Q 007580 306 KRHAAFSSSELIGLYEVPGKHSAIKGSGKIAHTDDFRCLDKAALELKEDVINPSPWKLCTVTQVEEVKTLVRLVPIPACT 385 (597)
Q Consensus 306 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 385 (597)
..++..+.-|. .++-..|..+.++.+....
T Consensus 203 ------------------------------~~~~~~~~~~~--------------------~~l~k~~~fw~~~l~v~g~ 232 (412)
T PF01306_consen 203 ------------------------------AKKDKVSLKDV--------------------LSLFKMRNFWFFVLFVIGV 232 (412)
T ss_dssp ------------------------------S------HHHH--------------------HHHTTSHHHHHHHHHHHHH
T ss_pred ------------------------------cCCCCCcHHHH--------------------HHHhcchhHHHHHHHHHHH
Confidence 00000000000 0001112333333333333
Q ss_pred HHHHHHH-hcchhhHHHHHh--hhcccC--------------------CCCCCCChhHHHHHHHHHHHHHHHHHHHHHHH
Q 007580 386 IMLNVIL-TEFLTLSVQQAY--TMNTHM--------------------GHPRGASQLQRVGIGLAVSILSVIWAGIFERY 442 (597)
Q Consensus 386 ~~~~~~~-~~~~~~~~~~~~--~~~~~~--------------------~~~~~~~~~~~i~~G~~l~~~~~~~~~~~~~~ 442 (597)
...+..+ +|.+.++..+-. ...... +.-+|.+.+..+.++.+++.+=....++
T Consensus 233 ~~~Y~vfdqqf~~y~~~~f~~~~~g~~~~G~l~s~~v~~E~~~m~~~p~li~rig~k~~Lllag~i~~iRi~~~~~---- 308 (412)
T PF01306_consen 233 AAIYDVFDQQFPIYFASFFQSAGQGNQMYGYLWSVQVFLEALMMFFSPWLINRIGAKNLLLLAGVIMAIRIIGSGF---- 308 (412)
T ss_dssp HHHHHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHT----
T ss_pred HHHHHHHHHHHHHHHHHHhcccccChhHHhHHHHHHHHHHHHHHHHHHHHHHhcChHhHHHHHHHHHHHHHHHHhh----
Confidence 3333333 443333322100 000000 1111111221122221111111111111
Q ss_pred HhHHhhhcCccccccCcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhhHHHHHHHH-HHHHHHHHHHHHHHH
Q 007580 443 RRNYAISHGYEFSFLTAMPDLSAYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPDAMKSIGSAYA-ALAGGLGCFAASILN 521 (597)
Q Consensus 443 ~~~~~~~~g~~~~~~~~~~~~s~~~l~~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~gl~-~~~~~lg~~lg~~l~ 521 (597)
. .+++++++.-.+.++-..+......-++.+.+|++..++.-.+. ++..++|..+.+.+.
T Consensus 309 ------------------~-~~~~~i~~~klLH~~e~~l~lva~fkYI~~~fd~rlsAt~y~v~~~~~~~~~~~i~s~~~ 369 (412)
T PF01306_consen 309 ------------------A-TNPWVISLIKLLHALEFPLLLVAAFKYITAHFDKRLSATLYLVGFQFAKQIGIIILSPLA 369 (412)
T ss_dssp ---------------------SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS-GGGHHHHHHHHHTTTHHHHHHHHHHHH
T ss_pred ------------------h-cchHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHhHHHHHHHHHHHHHHHHHHHHHhhhH
Confidence 1 45667777778888888888999999999999999998888885 789999999999999
Q ss_pred HHhhhccCCCCCCCCCccccCCCCcchhHHHHHHHHHHHHHHHHHHHhhhccc
Q 007580 522 SIIKSVTGNPKKGQPNWLAQNINTGRFDYLYWLLAVLSVINFCAFLYSAYRYK 574 (597)
Q Consensus 522 ~~v~~~~g~~~~~~~~w~~~~l~~~~~~~~f~~~a~l~~l~~~~~~~~~~~~~ 574 (597)
|.+.+..| ++..|++++++.++..++-++..++.+
T Consensus 370 G~lyd~~G------------------~~~tylimg~iv~~~~li~~f~l~~~~ 404 (412)
T PF01306_consen 370 GYLYDRIG------------------FQHTYLIMGLIVLPFTLISAFTLKKDK 404 (412)
T ss_dssp HHHHHHHH------------------HHHHHHHHHHHHHHHHHHHHHHS--SS
T ss_pred HhhHhhcC------------------cHHHHHHHHHHHHHHHHHheeeecCCC
Confidence 99888766 567899999988877777777655543
No 110
>PF13347 MFS_2: MFS/sugar transport protein
Probab=99.61 E-value=8.5e-14 Score=150.08 Aligned_cols=178 Identities=14% Similarity=0.070 Sum_probs=129.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHhhhhHHHhh----cccchHHHHH-HHHHHHHHHHHHH
Q 007580 79 MAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLAD----AYLGRYWTIA-IFTTIYLAGLTGI 153 (597)
Q Consensus 79 ~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~lsD----~~~GR~~~~~-~~~~l~~~g~~~~ 153 (597)
+...+..+....++..|+++.+|+++..++.+.....+..++..|+.|.++| | +||||.++ ++.++..++.+++
T Consensus 11 ~~~~~~~~~~~~~~~~f~~~~~gl~~~~~g~i~~~~~i~dai~dp~~G~~sDr~~tr-~Grrrp~~l~g~i~~~~~~~ll 89 (428)
T PF13347_consen 11 LGYNMIWSLLSSYLLYFYTDVLGLSPALAGLILLVGRIWDAITDPLIGYLSDRTRTR-WGRRRPWILIGAILLALSFFLL 89 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhhhcCCcEEEEEeeeccc-ccccceEeehhhHHHHHHHHHh
Confidence 4445555556678899999999999999999999999999999999999999 7 89776665 5667777777666
Q ss_pred HHhhhccccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhhchhhhhhhhhhccCCCCCchhhhhhhhHHHH
Q 007580 154 TLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNF 233 (597)
Q Consensus 154 ~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~R~~~~~~ 233 (597)
.... |. +.........+++..++..++.........++.+|+.++.++ |.+..++
T Consensus 90 f~~~------p~--------------~~~~~~~~~~~~~~~~l~~~~~t~~~i~~~al~~~lt~~~~~-----R~~l~~~ 144 (428)
T PF13347_consen 90 FSPP------PA--------------GLSFTAKLVWLFVFYILFDIAYTFVQIPYNALIPELTPDPDE-----RTRLSSW 144 (428)
T ss_pred hccc------cc--------------hhhhhhHHHHHHHHHHHHHHhhhhccCchhhcCccccccHhh-----hhhHHHH
Confidence 6430 00 000002334456666677899999999999999999985432 8888888
Q ss_pred HHHHHHHHHHHHHHHHHHhhh----c---cchHHHHHHHHHHHHHHHHHHHHhcCc
Q 007580 234 FYLSVTVGAIVAFTLVVYIQM----E---HGWGSAFGALAIAMGISNMLFFIGTPL 282 (597)
Q Consensus 234 ~~~~~~lg~~l~p~i~~~i~~----~---~gw~~~f~i~~~~~~~~~~~~~~~~~~ 282 (597)
-.....+|..+...+.+.+.+ . .+|++..++.+++.++..++.....|+
T Consensus 145 ~~~~~~~g~~l~~~~~~~l~~~~g~~~~~~~~~~~~~v~~iv~~v~~~i~~~~~ke 200 (428)
T PF13347_consen 145 RMIFSMIGSLLASFLAPILVSWFGGGDTSNGYRWMALVLAIVGLVFFLITFFFVKE 200 (428)
T ss_pred HHHHHHHHHHHHHHHhhhhhhhhccCccchHHHHHHHHHHHHHHHHhhhhhheeee
Confidence 777777777655555554432 1 169999888888777777666666655
No 111
>PTZ00207 hypothetical protein; Provisional
Probab=99.61 E-value=6.7e-12 Score=138.06 Aligned_cols=183 Identities=9% Similarity=-0.012 Sum_probs=136.6
Q ss_pred cCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHhhhhHHHhhcccchHHHHHHHH
Q 007580 64 KTGGWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFT 143 (597)
Q Consensus 64 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~lsD~~~GR~~~~~~~~ 143 (597)
..++|..+...+....+.... |++... ...+.+++|++..+.+++.+... ...++.++.|+++|| +|||+++.++.
T Consensus 23 e~~Rw~~lva~~~~~~~~g~~-y~fsv~-s~~L~~~lgls~~~l~~i~svg~-~~g~~~lp~G~L~Dr-~G~R~vllig~ 98 (591)
T PTZ00207 23 EPRRFALLVLGAFCSICTSFM-YAFNLI-SGAMQARYNLTQRDLSTITTVGI-AVGYFLLPYSFIYDY-LGPRPIFVLSM 98 (591)
T ss_pred ccchHHHHHHHHHHHHHHHHH-HHHHHH-HHHHHHHhCcCHHHHHHHHHHHH-HHHHHHHHHHHHHHH-hCcHHHHHHHH
Confidence 356776665555555555444 555443 45789999999999998877643 334566778999999 89999999999
Q ss_pred HHHHHHHHHHHHhhhccccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhhchhhhhhhhhhccCCCCCchh
Q 007580 144 TIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDY 223 (597)
Q Consensus 144 ~l~~~g~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~ 223 (597)
+++.+|.++++++.... .. .+.+.+++.|++.|+|.+...+.....+.++|| ++
T Consensus 99 ll~~iG~ll~ala~~~~--i~--------------------~s~~~l~l~r~l~G~G~~~~~~~~~~~i~~~Fp-~~--- 152 (591)
T PTZ00207 99 TVFCLGTLLFALTFQEV--IE--------------------GSVVRLSVYNGLMTLGCMLFDLGAVVTVLSVFP-SN--- 152 (591)
T ss_pred HHHHHHHHHHHHHhccc--cc--------------------CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCh-hh---
Confidence 99999999999863210 00 367889999999999999998888999999997 56
Q ss_pred hhhhhhHHHHHHHHHHHHHHH-HHHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHhcC
Q 007580 224 KTHLDRFFNFFYLSVTVGAIV-AFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGTP 281 (597)
Q Consensus 224 ~~~R~~~~~~~~~~~~lg~~l-~p~i~~~i~~~~gw~~~f~i~~~~~~~~~~~~~~~~~ 281 (597)
|+...++......+|+++ +++..+++. .+|++.|++.+++.++..++++...+
T Consensus 153 ---RG~a~Gi~~~~~gLGsaI~~~l~~~l~~--~~~~~~fl~l~vl~~vv~ll~~~~vr 206 (591)
T PTZ00207 153 ---RGAVVAIMKTFTGLGSAILGSIQLAFFS--DNTSAYFFFLMSFALVVGILAIVFMR 206 (591)
T ss_pred ---hHHHHHHHHHHHHHHHHHHHHHHHHHHH--HhHHHHHHHHHHHHHHHHHHHHhhee
Confidence 999999999999999975 555555554 35787788777766555544444333
No 112
>KOG2533 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]
Probab=99.59 E-value=7.9e-13 Score=142.71 Aligned_cols=152 Identities=12% Similarity=0.047 Sum_probs=127.3
Q ss_pred HHHhhCCChHHHHHHHHHHHHHHHHHhhhhHHHhhcccchHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCcccccccc
Q 007580 96 MFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDRISQL 175 (597)
Q Consensus 96 l~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~lsD~~~GR~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~c~~~~~~ 175 (597)
+.++.++...+.+.+.++|.++++++.+++|.|.|| +.-.+.+..+.+.+.+..++....
T Consensus 72 ~~edl~~~~~~l~~~~t~F~v~Yii~~~p~~~L~~r-~~ls~~l~~~~~~w~~~~~~~~~~------------------- 131 (495)
T KOG2533|consen 72 LKEDLKLVGNQLGVLDTVFYVGYIIGQFPSGLLGDR-FPLSKGLSVSGILWGLFGFLTAAV------------------- 131 (495)
T ss_pred CccccchhhhhhhhHHHHHHHHHHHHHhhHHHHHHh-CChHHHHHHHHHHHHHHHHHHHHH-------------------
Confidence 346777888899999999999999999999999999 786666666666555544444433
Q ss_pred cCCCCCccchhHHHHHHHHHHHHHhhhchhhhhhhhhhccCCCCCchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhh--
Q 007580 176 LGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQ-- 253 (597)
Q Consensus 176 ~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~R~~~~~~~~~~~~lg~~l~p~i~~~i~-- 253 (597)
.|.+.+++.|++.|+.+++.+|+...+++.+|.+++ |+.-+++++....+|.++|.++...+.
T Consensus 132 ---------~s~~~~ialr~llGl~es~~wP~~~~~lg~wy~~~e------~g~r~~~~~a~~~~g~i~ggliA~g~~~~ 196 (495)
T KOG2533|consen 132 ---------HSFPGLIALRFLLGLFESGGWPGVVAILGNWYGKSE------RGLRMGIWYASASLGNIFGGLIAYGVFKL 196 (495)
T ss_pred ---------hhhHHHHHHHHHHHHHhcccchHHHHHHHhhcChhh------hhhhHHHHHHhcchhhHHHHHHHHHhhhh
Confidence 578899999999999999999999999999999999 999999999999999999999998863
Q ss_pred ----hccchHHHHHHHHHHHHHHHHHHHHhcCc
Q 007580 254 ----MEHGWGSAFGALAIAMGISNMLFFIGTPL 282 (597)
Q Consensus 254 ----~~~gw~~~f~i~~~~~~~~~~~~~~~~~~ 282 (597)
...||||.|.+.+++.++..++.++..|.
T Consensus 197 ~~~~~~~gW~~~FiI~G~i~~~~gi~~f~~lp~ 229 (495)
T KOG2533|consen 197 NGSGGLAGWRWLFIIEGVITLVLGIVVFFFLPD 229 (495)
T ss_pred cCCCCcCCceeehhHHHHHHHHHHheEEEEecC
Confidence 34689999999998877666665555543
No 113
>PRK11462 putative transporter; Provisional
Probab=99.57 E-value=8.7e-12 Score=135.60 Aligned_cols=180 Identities=11% Similarity=0.063 Sum_probs=127.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHhhhhHHHhhc---ccchHHHHH-HHHHHHHHHHH
Q 007580 76 GNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADA---YLGRYWTIA-IFTTIYLAGLT 151 (597)
Q Consensus 76 ~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~lsD~---~~GR~~~~~-~~~~l~~~g~~ 151 (597)
+..+..++.+..+..++..|+++.+|+++..++.+....-+.-++.-|+.|+++|| .+||||..+ ++.+...++.+
T Consensus 16 ~g~~~~~~~~~~~~~~l~~fyt~~~Gl~~~~~g~i~~~~ri~Dai~Dp~~G~~~D~t~~r~Gr~rp~il~g~i~~~i~~~ 95 (460)
T PRK11462 16 MGDAASHIIFDNVMLYMMFFYTDIFGIPAGFVGTMFLVARALDAISDPCMGLLADRTRSRWGKFRPWVLFGALPFGIVCV 95 (460)
T ss_pred cchhhhhHHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHHhhhheehhccCCCCCCCcchhHhHHHHHHHHHHH
Confidence 34444556656667788999999999999999999999999999999999999997 279876665 56566776666
Q ss_pred HHHHhhhccccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhhchhhhhhhhhhccCCCCCchhhhhhhhHH
Q 007580 152 GITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFF 231 (597)
Q Consensus 152 ~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~R~~~~ 231 (597)
++... |... .......+++.-.+..++.........++.+|+.++.++ |.+..
T Consensus 96 llf~~---p~~s-------------------~~~~~~y~~~~~~~~~~~~t~~~ipy~al~~~lt~d~~e-----Rt~l~ 148 (460)
T PRK11462 96 LAYST---PDLS-------------------MNGKMIYAAITYTLLTLLYTVVNIPYCALGGVITNDPTQ-----RISLQ 148 (460)
T ss_pred HHHhC---CCCC-------------------cchHHHHHHHHHHHHHHHHHHHhccHHHHHHHhcCCHHH-----HHHHH
Confidence 65533 1000 002234455555667888888888889999999875332 99999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhc-------cchHHHHHHHHHHHHHHHHHHHHhcCc
Q 007580 232 NFFYLSVTVGAIVAFTLVVYIQME-------HGWGSAFGALAIAMGISNMLFFIGTPL 282 (597)
Q Consensus 232 ~~~~~~~~lg~~l~p~i~~~i~~~-------~gw~~~f~i~~~~~~~~~~~~~~~~~~ 282 (597)
++...+.++|..+++.+...+... .||+....+.+++.+++.++.+...++
T Consensus 149 s~r~~~~~iG~~~~~~~~~plv~~~g~~~~~~g~~~~~~i~~ii~~i~~~i~~~~~kE 206 (460)
T PRK11462 149 SWRFVLATAGGMLSTVLMMPLVNLIGGDNKPLGFQGGIAVLSVVAFMMLAFCFFTTKE 206 (460)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhhHHHHHHHHHHHHHHHHHHHHhccee
Confidence 999888888888877766544332 357776666666555555444444443
No 114
>PRK10642 proline/glycine betaine transporter; Provisional
Probab=99.53 E-value=5.3e-13 Score=146.49 Aligned_cols=179 Identities=12% Similarity=0.030 Sum_probs=132.7
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHhhhhHHHhhcccchHHHHHHHHHHH
Q 007580 67 GWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIY 146 (597)
Q Consensus 67 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~lsD~~~GR~~~~~~~~~l~ 146 (597)
+|+.....+...++..+.+|++..++|.|+++.+|++..++........++..++.+++|+++|| +|||+++.++.++.
T Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr-~grr~~~~~~~~~~ 326 (490)
T PRK10642 248 HWRSLLTCIGLVIATNVTYYMLLTYMPSYLSHNLHYSEDHGVLIIIAIMIGMLFVQPVMGLLSDR-FGRRPFVILGSVAL 326 (490)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hccHHHHHHHHHHH
Confidence 45555555555566778889999999999999999998888888888888899999999999999 89999988887654
Q ss_pred HHHHHHHHHhhhccccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhhchhhhhhhhhhccCCCCCchhhhh
Q 007580 147 LAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTH 226 (597)
Q Consensus 147 ~~g~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~ 226 (597)
.++...+..... . .+...+++++++.+++.+...+....++.+.+|++.
T Consensus 327 ~~~~~~~~~~~~-----~--------------------~~~~~~~~~~~~~g~~~~~~~g~~~~~~~~~~p~~~------ 375 (490)
T PRK10642 327 FVLAIPAFILIN-----S--------------------NVIGLIFAGLLMLAVILNCFTGVMASTLPAMFPTHI------ 375 (490)
T ss_pred HHHHHHHHHHHh-----C--------------------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCcc------
Confidence 443333221110 0 234567788888888877777778888899999999
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHhhhcc-chHHHHHHHHHHHHHHHHHHH
Q 007580 227 LDRFFNFFYLSVTVGAIVAFTLVVYIQMEH-GWGSAFGALAIAMGISNMLFF 277 (597)
Q Consensus 227 R~~~~~~~~~~~~lg~~l~p~i~~~i~~~~-gw~~~f~i~~~~~~~~~~~~~ 277 (597)
|++++++.+....+++.++|.+.+++.+.. +|+.++++..+..+++++..+
T Consensus 376 Rg~~~g~~~~~~~~~g~~~p~i~g~l~~~~~~~~~~~~~~~~~~~i~~~~~~ 427 (490)
T PRK10642 376 RYSALAAAFNISVLVAGLTPTLAAWLVESTQNLMMPAYYLMVVAVIGLITGV 427 (490)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHH
Confidence 999999854445666788999999988765 477776655554444444433
No 115
>PRK09556 uhpT sugar phosphate antiporter; Reviewed
Probab=99.51 E-value=6.9e-13 Score=144.69 Aligned_cols=175 Identities=16% Similarity=0.078 Sum_probs=134.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHhhhhHHHhhcccchHHHHHHHHHHHHHH
Q 007580 70 AALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAG 149 (597)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~lsD~~~GR~~~~~~~~~l~~~g 149 (597)
.+|.+.+..++....++++..++|.|+++++|++..++++....+.++..++.+++|+++|| +|||+.+.+...+..++
T Consensus 259 ~~~~~~~~~~~~~~~~~~~~~~~p~yl~~~~g~s~~~a~~~~~~~~~~~~ig~~~~G~lsDr-~g~r~~~~~~~~~~~~~ 337 (467)
T PRK09556 259 VIWLLCFANIFLYIVRIGIDNWSPVYAFQELGFSKEDAINTFTLFEIGALVGSLLWGWLSDL-ANGRRALVACIALALII 337 (467)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HCCCchHHHHHHHHHHH
Confidence 56777777888888888888999999999999999999999999999999999999999999 89998776655444433
Q ss_pred HHHHHHhhhccccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhhchhhhhhhhhhccCCCCCchhhhhhhh
Q 007580 150 LTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDR 229 (597)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~R~~ 229 (597)
..++.+... .+....++.+++.|++..+..........|.+|++. |++
T Consensus 338 ~~~~~~~~~--------------------------~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~p~~~------~g~ 385 (467)
T PRK09556 338 FTLGVYQHA--------------------------TSEYMYLASLFALGFLVFGPQLLIGVAAVGFVPKKA------IGV 385 (467)
T ss_pred HHHHHHHhc--------------------------CcHHHHHHHHHHHHHHHhhHHHHHHHHHHhhcchhh------HHH
Confidence 322222210 234455566777776554444444466779999998 999
Q ss_pred HHHHHHHHHHH-HHHHHHHHHHHhhh------------ccchHHHHHHHHHHHHHHHHHHH
Q 007580 230 FFNFFYLSVTV-GAIVAFTLVVYIQM------------EHGWGSAFGALAIAMGISNMLFF 277 (597)
Q Consensus 230 ~~~~~~~~~~l-g~~l~p~i~~~i~~------------~~gw~~~f~i~~~~~~~~~~~~~ 277 (597)
+.++.+...++ |..++|.+.|++.+ ..||+..|++..+..+++.++.+
T Consensus 386 a~gi~~~~g~l~g~~~~~~~~G~i~~~~~~g~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~ 446 (467)
T PRK09556 386 ANGIKGTFAYLFGDSFAKVGLGMIADPTKNGTPIFGYTLTGWAGTFAALDIAAIGCICLMA 446 (467)
T ss_pred HHHHHHHHHHHHhHHHHhhhHHHHhcccccccccccccccChHHHHHHHHHHHHHHHHHHH
Confidence 99999988886 77999999999999 57899999888776666655444
No 116
>PRK15011 sugar efflux transporter B; Provisional
Probab=99.48 E-value=4.6e-12 Score=135.01 Aligned_cols=163 Identities=11% Similarity=0.093 Sum_probs=126.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHhhhhHHHhhcccchHHHHHHHHHHHHHHHHHHHHhhh
Q 007580 79 MAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCAT 158 (597)
Q Consensus 79 ~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~lsD~~~GR~~~~~~~~~l~~~g~~~~~~~~~ 158 (597)
++....++.+..+++.|+++++|++..+++...+...+...++.+++|+++|| +|||+.+..+.+...+....+...
T Consensus 226 ~~~~~~~~~~~~~~p~~l~~~~~~~~~~~g~~~~~~~~~~i~~~~~~G~l~dr-~g~~~~~~~~~~~~~~~~~~~~~~-- 302 (393)
T PRK15011 226 TLMWGTNSLYIINMPLFIINELHLPEKLAGVMMGTAAGLEIPTMLIAGYFAKR-LGKRFLMRVAAVAGVCFYAGMLMA-- 302 (393)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hChHHHHHHHHHHHHHHHHHHHHH--
Confidence 33344445566788999999999999999988887777888899999999999 899998877765554443333322
Q ss_pred ccccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhhchhhhhhhhhhccCCCCCchhhhhhhhHHHHHHHHH
Q 007580 159 MKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSV 238 (597)
Q Consensus 159 ~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~R~~~~~~~~~~~ 238 (597)
.+...+++.+++.+++.+...+.......|.+|+ + |++.+++++...
T Consensus 303 --------------------------~~~~~~l~~~~l~~~~~g~~~~~~~~~~~~~~p~-~------~g~~~~~~~~~~ 349 (393)
T PRK15011 303 --------------------------HSPAILLGLQLLNAIYIGILGGIGMLYFQDLMPG-Q------AGSATTLYTNTS 349 (393)
T ss_pred --------------------------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC-C------cchHHHHHHHHH
Confidence 2445566777777777777777777788888874 5 788999988889
Q ss_pred HHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHH
Q 007580 239 TVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFF 277 (597)
Q Consensus 239 ~lg~~l~p~i~~~i~~~~gw~~~f~i~~~~~~~~~~~~~ 277 (597)
++|..++|.++|++.+..||++.|++.++..++++++.+
T Consensus 350 ~lg~~~g~~l~G~i~~~~g~~~~~~~~~~~~~~~~~~~~ 388 (393)
T PRK15011 350 RVGWIIAGSLAGIVAEIWNYHAVFWFALVMIIATLFCLL 388 (393)
T ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999887776666555544
No 117
>PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions. Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins.
Probab=99.48 E-value=2.2e-10 Score=124.15 Aligned_cols=91 Identities=19% Similarity=0.189 Sum_probs=73.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCCCCCccccCCCCcc
Q 007580 468 LLIQYCLIGIAEVFCIVGLLEFLYEEAPDAMKSIGSAYAALAGGLGCFAASILNSIIKSVTGNPKKGQPNWLAQNINTGR 547 (597)
Q Consensus 468 l~~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~gl~~~~~~lg~~lg~~l~~~v~~~~g~~~~~~~~w~~~~l~~~~ 547 (597)
+.+.-++.|+..+...+..-++..++.|+++.+...|++.+.....+++||++++.+.+.+| +
T Consensus 383 f~~~a~~~G~~~G~~qs~sRs~~~~LiP~g~e~efFgly~i~gk~ss~lGPll~g~i~~~tg-----------------~ 445 (477)
T PF11700_consen 383 FWVLAVLIGLFMGGIQSASRSLFSRLIPPGREAEFFGLYAITGKASSWLGPLLFGLITDATG-----------------S 445 (477)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-----------------C
Confidence 33444578888889999999999999999999999999999999999999999999998887 1
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhhhccccc
Q 007580 548 FDYLYWLLAVLSVINFCAFLYSAYRYKYR 576 (597)
Q Consensus 548 ~~~~f~~~a~l~~l~~~~~~~~~~~~~~~ 576 (597)
..+-+..+.++.++++++++.. +..|++
T Consensus 446 ~r~g~~~l~~lf~~gl~ll~~v-~~~~g~ 473 (477)
T PF11700_consen 446 QRYGFLFLLVLFLIGLILLFFV-DVEKGR 473 (477)
T ss_pred chhHHHHHHHHHHHHHHHHhhc-cchhhh
Confidence 2455777788888887776443 433443
No 118
>TIGR01299 synapt_SV2 synaptic vesicle protein SV2. This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices.
Probab=99.44 E-value=5e-12 Score=143.08 Aligned_cols=131 Identities=9% Similarity=0.023 Sum_probs=107.5
Q ss_pred HHHHHHHHHHHhhhhHHHhhcccchHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCcccccccccCCCCCccchhHHHH
Q 007580 111 VNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYL 190 (597)
Q Consensus 111 ~~~~~~~~~~~~~~~G~lsD~~~GR~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~l 190 (597)
..+..++..++.+++|+++|| +|||++++++.++.+++.+++++. .+...+
T Consensus 601 ~~l~~l~~i~G~il~g~L~Dr-~GRr~~l~~~~~lsai~~ll~~~~----------------------------~s~~~l 651 (742)
T TIGR01299 601 NFLGTLAVLPGNIVSALLMDK-IGRLRMLAGSMVLSCISCFFLSFG----------------------------NSESAM 651 (742)
T ss_pred HHHHHHHHHHHHHHHHHHHHH-hCCHHHHHHHHHHHHHHHHHHHHH----------------------------ccHHHH
Confidence 445567889999999999999 899999999998888888777765 234456
Q ss_pred HHHHHHHHHhhhchhhhhhhhhhccCCCCCchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhccchHHHHHHHHHHHH
Q 007580 191 YTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMG 270 (597)
Q Consensus 191 ~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~R~~~~~~~~~~~~lg~~l~p~i~~~i~~~~gw~~~f~i~~~~~~ 270 (597)
++.+++.+++.++..+...++++|++|++. |++++++.+....+|+++||.+++++.+. +...+|++.+++.+
T Consensus 652 l~~~~l~g~~~~~~~~~~~a~~aEl~Pt~~------Rgta~Gi~~~~~rlGaiigp~i~g~L~~~-~~~~pf~i~a~~ll 724 (742)
T TIGR01299 652 IALLCLFGGLSIAAWNALDVLTVELYPSDK------RATAFGFLNALCKAAAVLGILIFGSFVGI-TKAAPILFASAALA 724 (742)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHh-hhHHHHHHHHHHHH
Confidence 677778888888888999999999999999 99999999999999999999999988764 45667777766665
Q ss_pred HHHHHHH
Q 007580 271 ISNMLFF 277 (597)
Q Consensus 271 ~~~~~~~ 277 (597)
++.++.+
T Consensus 725 l~~ll~~ 731 (742)
T TIGR01299 725 CGGLLAL 731 (742)
T ss_pred HHHHHHH
Confidence 5554443
No 119
>PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon. It is an integral membrane protein. The family includes other proteins form Rhodobacter eg. bacteriochlorophyll synthase.
Probab=99.44 E-value=6.4e-10 Score=114.82 Aligned_cols=376 Identities=14% Similarity=0.083 Sum_probs=203.2
Q ss_pred HHHhhCCChHHHHHHHHHHHHHHHHHhhhhHHHhhcccc-----hHH-HHHHHHHHHHHHHHHHHHhhhccccCCCCCcc
Q 007580 96 MFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLG-----RYW-TIAIFTTIYLAGLTGITLCATMKVFMPNQDNC 169 (597)
Q Consensus 96 l~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~lsD~~~G-----R~~-~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~c 169 (597)
+..|++++....+..+....+.. ...+..|..||+ .+ ||- -+..+.+++..+..+...+.......-
T Consensus 6 MIvEL~vpA~lv~~lval~~~~a-p~R~~~G~~SD~-~~s~~G~rRtPyI~~G~~~~~~g~~~ap~a~~~l~~~~----- 78 (403)
T PF03209_consen 6 MIVELGVPAWLVALLVALHYLVA-PLRVWFGHRSDT-HPSILGWRRTPYIWGGTLLQAGGLAIAPFALLLLAESG----- 78 (403)
T ss_pred HHHHhccHHHHHHHHHHHHHHHH-HHHHHhcccccc-CcccCcCCchhhhHHHHHHHHHHHHHHHHHHHHHcccc-----
Confidence 45678888888887777766554 468899999998 46 554 445667777777777666543221100
Q ss_pred cccccccCCCCCccchhHHHHHHHHHHHHHhhhchhhhhhhhhhccCCCCCchhhhhhhhHHHHHHHHHHHHHHHHHHHH
Q 007580 170 DRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLV 249 (597)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~R~~~~~~~~~~~~lg~~l~p~i~ 249 (597)
.....+.-.......++..+.|+|.+...++..++++|..|+++ |++..++.+....+|..++..+.
T Consensus 79 -------~~~~~~~~~g~~~a~l~F~l~G~G~~~s~T~~lALl~D~~~e~~------R~~~v~ivw~Mli~G~iv~ai~~ 145 (403)
T PF03209_consen 79 -------QQSSGPFWLGLALAALAFLLYGLGVHASGTSFLALLADLAPEER------RPRVVAIVWVMLIVGIIVSAIVF 145 (403)
T ss_pred -------cccccccHHHHHHHHHHHHHHHhhHhHhHHHHHHHHHhcCCHhh------hhhhHHHHHHHHHHHHHHHHHHH
Confidence 00011111222344456667899999999999999999999999 99999999999999999999999
Q ss_pred HHhhhccchHHHHHH----HHHHHHHHHHHHHHhcC-cccccC-CCCCchhhHHHHHHHHHHhhhcccCccccccccccC
Q 007580 250 VYIQMEHGWGSAFGA----LAIAMGISNMLFFIGTP-LYRHRL-PGGSPLTRVAQVLVAAFRKRHAAFSSSELIGLYEVP 323 (597)
Q Consensus 250 ~~i~~~~gw~~~f~i----~~~~~~~~~~~~~~~~~-~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 323 (597)
+.+.+.++..-..-+ ..+...+.++. .+..+ +.++.. ...++...+.+.....+.++... +
T Consensus 146 g~lL~~~s~~rL~~v~~~~a~i~~~l~~ia-~wg~E~r~~~~~~~~~~~~~~f~~a~~~~~~~~~a~-----~------- 212 (403)
T PF03209_consen 146 GRLLDPFSPERLIQVIQGVALIALLLNLIA-LWGQEPRRSRRAAAAERPRPPFREAWRQVWASPQAR-----R------- 212 (403)
T ss_pred HHHccccCHHHHHHHHHHHHHHHHHHHHHH-HHhcccCCcccccCCCCCCccHHHHHHHHHhCCChh-----H-------
Confidence 988877653222222 12222222222 22211 111111 11122222221111111110000 0
Q ss_pred CCcccccCCcccccCCcchhhHHHhhhhhcccCCCCCCcc--ccchhhhhhhHhHhhhhhHHHHHHHHHHHhcchhhHHH
Q 007580 324 GKHSAIKGSGKIAHTDDFRCLDKAALELKEDVINPSPWKL--CTVTQVEEVKTLVRLVPIPACTIMLNVILTEFLTLSVQ 401 (597)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 401 (597)
.+.++-....-...++.-..|+-- +.. .+.| ..++-.+|.......+..
T Consensus 213 ----------------f~~fl~l~t~a~~~QD~iLEPygg~Vfgm-sv~e---TT~Lta~~~~G~L~G~~~--------- 263 (403)
T PF03209_consen 213 ----------------FFVFLFLGTLAFFMQDVILEPYGGEVFGM-SVGE---TTRLTAFWGGGTLLGMLL--------- 263 (403)
T ss_pred ----------------HHHHHHHHHHHHHhhHHHcCCchhHHcCC-CHHH---HHHHHHHHHHHHHHHHHH---------
Confidence 000111100000000000122210 000 0011 111111121111111111
Q ss_pred HHhhhcccCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhcCccccccCcCccchHHHHHHHHHHHHHHHHH
Q 007580 402 QAYTMNTHMGHPRGASQLQRVGIGLAVSILSVIWAGIFERYRRNYAISHGYEFSFLTAMPDLSAYWLLIQYCLIGIAEVF 481 (597)
Q Consensus 402 ~~~~~~~~~~~~~~~~~~~~i~~G~~l~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~s~~~l~~~~~l~g~g~~~ 481 (597)
.+.... ++....+...+|.+...+++......... .+.+.+.+..+++|++.++
T Consensus 264 ~g~~l~------~~~~~~~~a~~G~~~~~~~f~lii~a~~~--------------------~~~~~~~~~~~l~G~g~G~ 317 (403)
T PF03209_consen 264 AGFLLS------RRLGKKRTAALGCLLGALAFALIILAGPL--------------------GSPWLFRPGVFLLGLGNGL 317 (403)
T ss_pred HHHHhc------CCCCchHHHHHHHHHHHHHHHHHHHHHhc--------------------ccchHHHHHHHHHHHhhhH
Confidence 001111 12222333345555555555544333111 3456677888999999999
Q ss_pred HHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCCCCCccccCCCCcchhHHHHHHHHHHHH
Q 007580 482 CIVGLLEFLYEEAPDAMKSIGSAYAALAGGLGCFAASILNSIIKSVTGNPKKGQPNWLAQNINTGRFDYLYWLLAVLSVI 561 (597)
Q Consensus 482 ~~~~~~~~~~~~~P~~~rg~~~gl~~~~~~lg~~lg~~l~~~v~~~~g~~~~~~~~w~~~~l~~~~~~~~f~~~a~l~~l 561 (597)
......+...++++++..|..+|.+...+.++..++..+.+.+.+... ++..+-....|..+|.+=+++.++
T Consensus 318 f~vgals~mM~lt~~~~aG~~mG~WGaaQA~A~Glg~~~GG~~~D~~~--------~~~~~~~~~aY~~VF~lEa~ll~~ 389 (403)
T PF03209_consen 318 FTVGALSLMMDLTSAGRAGLFMGAWGAAQAIARGLGTFLGGALRDLVR--------ALFGNSPALAYGVVFALEAVLLLA 389 (403)
T ss_pred HHHHHHHHHHhCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HhccCCcchHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999998766432 111110112356667666666665
Q ss_pred HHHHHH
Q 007580 562 NFCAFL 567 (597)
Q Consensus 562 ~~~~~~ 567 (597)
++.+..
T Consensus 390 a~~ll~ 395 (403)
T PF03209_consen 390 ALVLLG 395 (403)
T ss_pred HHHHHH
Confidence 555433
No 120
>PRK03699 putative transporter; Provisional
Probab=99.43 E-value=7.1e-12 Score=133.57 Aligned_cols=173 Identities=14% Similarity=0.144 Sum_probs=135.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHhhhhHHHhhcccchHHHHHHHHHHHHHH
Q 007580 70 AALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAG 149 (597)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~lsD~~~GR~~~~~~~~~l~~~g 149 (597)
.++.+.+..++...+.+++..++|.|+++++|++..+++...+.+.++..++.+++|+++|| +|||+++.....+..++
T Consensus 206 ~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr-~~~~~~l~~~~~~~~~~ 284 (394)
T PRK03699 206 GVLFLAIAALLYILAQLTFISWVPEYAQKKFGMSLEDAGNLVSNFWMAYMVGMWIFSFIVRF-FDLQRILTVLAGLALVL 284 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHhhHHHHHHHHHHHHHHHHHHHHHHH-hchhhHHHHHHHHHHHH
Confidence 44555566666677778888999999999999999999999999999999999999999999 89999988777665555
Q ss_pred HHHHHHhhhccccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhhchhhhhhhhhhccCCCCCchhhhhhhh
Q 007580 150 LTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDR 229 (597)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~R~~ 229 (597)
..+.... .+...+.+..++.|++.++..+...+...+..|.+ +++
T Consensus 285 ~~~~~~~----------------------------~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~-------~~~ 329 (394)
T PRK03699 285 MYLFVNT----------------------------DDPSHLLYAILGLGFFSSAIYTTIITLGSQQTKVA-------SPK 329 (394)
T ss_pred HHHHHHc----------------------------CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHccCC-------CHH
Confidence 4444332 23344555667788888888888888888877643 455
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHHH
Q 007580 230 FFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFI 278 (597)
Q Consensus 230 ~~~~~~~~~~lg~~l~p~i~~~i~~~~gw~~~f~i~~~~~~~~~~~~~~ 278 (597)
..++......+|..++|.+.|++.+..||+..|++.++..+++.++...
T Consensus 330 ~~g~~~~~~~~g~~i~p~~~G~l~~~~g~~~~~~~~~~~~~~~~~~~~~ 378 (394)
T PRK03699 330 LVNFILTCGTIGTMLTFVVTSPIVAHFGLQAALLTANGLYAVVFVMCIL 378 (394)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHHHHhCchhhhhhhHHHHHHHHHHHHH
Confidence 6777777889999999999999999999999998877766655444333
No 121
>PRK09952 shikimate transporter; Provisional
Probab=99.42 E-value=1.8e-11 Score=132.39 Aligned_cols=182 Identities=12% Similarity=-0.002 Sum_probs=132.1
Q ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHhhhhHHHhhcccchHHHHHHHHHH
Q 007580 66 GGWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTI 145 (597)
Q Consensus 66 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~lsD~~~GR~~~~~~~~~l 145 (597)
++++.........++..+.+|.+..+++.|+++.+|++......+.........++.+++|+++|| +|||+++..+.++
T Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~g~s~~~~~~~~~~~g~~~~i~~~~~g~l~Dr-~grr~~~~~~~~~ 325 (438)
T PRK09952 247 RHPGAFLKIIALRLCELLTMYIVTAFALNYSTQNLGLPRELFLNIGLLVGGLSCLTIPCFAWLADR-FGRRRVYITGALI 325 (438)
T ss_pred HchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCchHHHHHHHHH
Confidence 344444444555667777888899999999999999988766555556666778888999999999 8999998888765
Q ss_pred HHHHHHHHHHhhhccccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhhchhhhhhhhhhccCCCCCchhhh
Q 007580 146 YLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKT 225 (597)
Q Consensus 146 ~~~g~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~ 225 (597)
..++...+..... .. .....+++..++.+++.+...+...++++|.+|.+.
T Consensus 326 ~~~~~~~~~~~~~-----~~-------------------~~~~~~~~~~~l~~~~~~~~~~~~~~~~~e~~p~~~----- 376 (438)
T PRK09952 326 GTLSAFPFFMALE-----AQ-------------------SIFWIVFFSIMLANIAHDMVVCVQQPMFTEMFGASY----- 376 (438)
T ss_pred HHHHHHHHHHHHH-----cC-------------------ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCcch-----
Confidence 5544433332210 00 123334445566688888888888999999999988
Q ss_pred hhhhHHHH-HHHHHHHHHHHHHHHHHHhhhcc--chHHHHHHHHHHHHHHHHHHHH
Q 007580 226 HLDRFFNF-FYLSVTVGAIVAFTLVVYIQMEH--GWGSAFGALAIAMGISNMLFFI 278 (597)
Q Consensus 226 ~R~~~~~~-~~~~~~lg~~l~p~i~~~i~~~~--gw~~~f~i~~~~~~~~~~~~~~ 278 (597)
|+++.++ +..+..+|+.++|.+.+++.+.. +|+..+...++..+++.+..+.
T Consensus 377 -r~tg~g~~~~~~~~lgg~~~p~i~g~l~~~~~~~~~~~~~~~~~~~~i~~v~~~~ 431 (438)
T PRK09952 377 -RYSGAGVGYQVASVVGGGFTPFIAAALVTYFGGSWHSVAIYLLAGCLISAMTALL 431 (438)
T ss_pred -hHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHH
Confidence 9999988 55556689999999999998743 4888887776666666555444
No 122
>PRK05122 major facilitator superfamily transporter; Provisional
Probab=99.41 E-value=1.5e-11 Score=131.13 Aligned_cols=166 Identities=14% Similarity=0.075 Sum_probs=132.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHhhhhHHHhhcccchHHHHHHHHHHHHHHHHHHHHhhh
Q 007580 79 MAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCAT 158 (597)
Q Consensus 79 ~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~lsD~~~GR~~~~~~~~~l~~~g~~~~~~~~~ 158 (597)
++..++++.+..+++.|+.+ .|.+ ..+.....+.++..++.++.|+++|| +|||+.+.++.++..++..+....
T Consensus 226 ~~~~~~~~~~~~~~~~~~~~-~~~~--~~~~~~~~~~~~~~~~~~~~g~l~~r-~~~~~~~~~~~~~~~~~~~~~~~~-- 299 (399)
T PRK05122 226 ALASIGFGTIATFITLYYAA-RGWD--GAALALTLFGVAFVGARLLFGNLINR-LGGLRVAIVSLLVEILGLLLLWLA-- 299 (399)
T ss_pred HHHHHHHHHHHHHHHHHHHH-cccc--cchHHHHHHHHHHHHHHHHHHHHHHH-hccHHHHHHHHHHHHHHHHHHHHh--
Confidence 34455556666778888764 4653 44566677888888999999999999 899999988888777777666654
Q ss_pred ccccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhhchhhhhhhhhhccCCCCCchhhhhhhhHHHHHHHHH
Q 007580 159 MKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSV 238 (597)
Q Consensus 159 ~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~R~~~~~~~~~~~ 238 (597)
.+...+++.+++.|++.+...+.......|.+|+++ |++.+++++...
T Consensus 300 --------------------------~~~~~~~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~------~g~~~g~~~~~~ 347 (399)
T PRK05122 300 --------------------------PSPWMALIGAALTGFGFSLVFPALGVEAVKRVPPQN------RGAALGAYSVFL 347 (399)
T ss_pred --------------------------ccHHHHHHHHHHHHHhHHHHHHHHHHHHHHhCCHHH------HHHHHHHHHHHH
Confidence 344566778889999999888888888889999888 999999999999
Q ss_pred HHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHhcCc
Q 007580 239 TVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGTPL 282 (597)
Q Consensus 239 ~lg~~l~p~i~~~i~~~~gw~~~f~i~~~~~~~~~~~~~~~~~~ 282 (597)
++|..++|.+.|++.+..||++.|++.++..++++++.+...++
T Consensus 348 ~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 391 (399)
T PRK05122 348 DLSLGITGPLAGLVASWFGYPSIFLAAALAALLGLALTWLLYRR 391 (399)
T ss_pred HHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 99999999999999999999999998887777666655554443
No 123
>cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters. MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3
Probab=99.41 E-value=1.3e-11 Score=127.84 Aligned_cols=171 Identities=20% Similarity=0.241 Sum_probs=149.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHhhhhHHHhhcccchHH-HHHHHHHHHHHH
Q 007580 71 ALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYW-TIAIFTTIYLAG 149 (597)
Q Consensus 71 ~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~lsD~~~GR~~-~~~~~~~l~~~g 149 (597)
++...+..++..........+.+.|+.+.+|.+..+.+.......++..++.++.|+++|| +|||+ .+.++.++..++
T Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~-~~~~~~~~~~~~~~~~i~ 255 (352)
T cd06174 177 LLLLALAFFLLSFGYYGLLTYLPLYLQEVLGLSAAEAGLLLSLFGLGGILGALLGGLLSDR-LGRRRLLLLIGLLLAALG 255 (352)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhhhHHHHHHHHHHHHH
Confidence 3445555666677777778888888888889999999999999999999999999999999 89999 999999988888
Q ss_pred HHHHHHhhhccccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhhchhhhhhhhhhccCCCCCchhhhhhhh
Q 007580 150 LTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDR 229 (597)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~R~~ 229 (597)
.+.+... .+...+++..++.|++.+...+....++.|.+|+++ |++
T Consensus 256 ~~~~~~~----------------------------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~------~~~ 301 (352)
T cd06174 256 LLLLALA----------------------------PSLALLLVALLLLGFGLGFAFPALLTLASELAPPEA------RGT 301 (352)
T ss_pred HHHHHHh----------------------------ccHHHHHHHHHHHHHHHhccchhHHHHHHhhcCHHH------HHH
Confidence 8877765 345677888999999999999999999999999988 999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHH
Q 007580 230 FFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLF 276 (597)
Q Consensus 230 ~~~~~~~~~~lg~~l~p~i~~~i~~~~gw~~~f~i~~~~~~~~~~~~ 276 (597)
.+++++...++|..++|.+.+++.+..+|++.|++.++..+++.++.
T Consensus 302 ~~~~~~~~~~~~~~i~~~i~g~l~~~~~~~~~~~~~~~~~~i~~i~~ 348 (352)
T cd06174 302 ASGLFNTFGSLGGALGPLLAGLLLDTGGYGGVFLILAALALLAALLL 348 (352)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcccCcchHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999998888777666554
No 124
>TIGR00890 2A0111 Oxalate/Formate Antiporter.
Probab=99.41 E-value=8.1e-12 Score=131.04 Aligned_cols=167 Identities=16% Similarity=0.095 Sum_probs=132.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHhhhhHHHhhcccchHHHHHHHHHHHHHHHH
Q 007580 72 LFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLT 151 (597)
Q Consensus 72 ~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~lsD~~~GR~~~~~~~~~l~~~g~~ 151 (597)
+.+.+..++..+.......+.+.|. +++|.+..+++.....+.++..++.++.|+++|| +|||+.+.++.++..++..
T Consensus 208 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr-~g~~~~~~~~~~~~~~~~~ 285 (377)
T TIGR00890 208 WVLYLSFFLNAVSGLLLIGLYKPYG-QSLGLSDGFLVLAVSISSIFNGGGRPFLGALSDK-IGRQKTMSIVFGISAVGMA 285 (377)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHH-HHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhhhhhhhHHHHHHHHHHH
Confidence 3333344444444444555566664 5689998888999999999999999999999999 8999999998888888777
Q ss_pred HHHHhhhccccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhhchhhhhhhhhhccCCCCCchhhhhhhhHH
Q 007580 152 GITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFF 231 (597)
Q Consensus 152 ~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~R~~~~ 231 (597)
++..... .+...+++..++.+++.+...+..+.+.+|.+|+++ |++.+
T Consensus 286 ~~~~~~~--------------------------~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~------~~~~~ 333 (377)
T TIGR00890 286 AMLFIPM--------------------------LNDVLFLATVALVFFTWGGTISLFPSLVSDIFGPAN------SAANY 333 (377)
T ss_pred HHHHccc--------------------------chhHHHHHHHHHHHHHhccchhccHHHHHHHhhhhh------hhhHh
Confidence 6665411 122334456677888888888888899999999998 99999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHH
Q 007580 232 NFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGIS 272 (597)
Q Consensus 232 ~~~~~~~~lg~~l~p~i~~~i~~~~gw~~~f~i~~~~~~~~ 272 (597)
++++....+|..++|.+.|++.++.||++.|.+.+++.+++
T Consensus 334 g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~f~~~~~~~~~~ 374 (377)
T TIGR00890 334 GFLYTAKAVAGIFGGLIASHALTEIGFEYTFIVTGAFALTS 374 (377)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhchhhHHHHHHHHHHHh
Confidence 99999999999999999999999999999998877655544
No 125
>TIGR00899 2A0120 sugar efflux transporter. This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria.
Probab=99.40 E-value=2.4e-11 Score=128.05 Aligned_cols=158 Identities=10% Similarity=0.043 Sum_probs=125.8
Q ss_pred HHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHhhhhHHHhhcccchHHHHHHHHHHHHHHHHHHHHhhhcccc
Q 007580 83 MAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVF 162 (597)
Q Consensus 83 ~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~lsD~~~GR~~~~~~~~~l~~~g~~~~~~~~~~~~~ 162 (597)
........+++.|+.+++|.++.+.+.......+...++.+++|+++|| +|||+++.++.++..++.......
T Consensus 213 ~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~~r-~g~~~~~~~~~~~~~~~~~~~~~~------ 285 (375)
T TIGR00899 213 GCNILYIINMPLLIIHELGLPDKLAGLMMGTAAGLEIPFMLLAGYLIKR-FGKRRLMLLAALAGVAFYTGLAAD------ 285 (375)
T ss_pred HHHHHHHhhhHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHH-hcchhHHHHHHHHHHHHHHHHHHH------
Confidence 3334455677889999999999999988877777778888999999999 899999888776555444433332
Q ss_pred CCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhhchhhhhhhhhhccCCCCCchhhhhhhhHHHHHHHHHHHHH
Q 007580 163 MPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGA 242 (597)
Q Consensus 163 ~~~~~~c~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~R~~~~~~~~~~~~lg~ 242 (597)
++...+++.+.+.|++.+...+....+..|.+|+ + |++.+++++...++|.
T Consensus 286 ----------------------~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~-~------~~~~~~~~~~~~~~g~ 336 (375)
T TIGR00899 286 ----------------------NSLWALLMLQLLNAIFIGILAGIGMLYFQDLMPG-R------AGAATTLYTNTGRVGW 336 (375)
T ss_pred ----------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcc-h------hhHHHHHHHHHHHHHH
Confidence 3455666777888998888888888888898875 3 5699999999999999
Q ss_pred HHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHH
Q 007580 243 IVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLF 276 (597)
Q Consensus 243 ~l~p~i~~~i~~~~gw~~~f~i~~~~~~~~~~~~ 276 (597)
.++|.+.|++.+..||+..|++.++..+++.++.
T Consensus 337 ~~g~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~ 370 (375)
T TIGR00899 337 IIAGSVGGILAERWSYHAVYWFAIVMLIVALFCL 370 (375)
T ss_pred HHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHH
Confidence 9999999999999999999998887766665554
No 126
>TIGR00889 2A0110 nucleoside transporter. This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli.
Probab=99.40 E-value=1.3e-11 Score=132.64 Aligned_cols=174 Identities=10% Similarity=0.022 Sum_probs=134.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhCCC--------hHHHHHHHHHHHHHHHHHhhhhHHHhhcccchHHHHHHHHHHHH
Q 007580 76 GNEMAERMAYFGLSVNMVTFMFYVMHKS--------FADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYL 147 (597)
Q Consensus 76 ~~~~~~~~~~~~~~~~l~~yl~~~~~~s--------~~~a~~~~~~~~~~~~~~~~~~G~lsD~~~GR~~~~~~~~~l~~ 147 (597)
+..++..........+++.|+.+ .+.+ ....+...+...+...++.++.|+++|| +|||+++.++.++..
T Consensus 215 ~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~g~~~~~~~i~~i~~~~~~g~l~dr-~g~r~~l~~~~~~~~ 292 (418)
T TIGR00889 215 FFSMLLGAPLQITNIFGNGFLHE-FGRNPEFADSFVVKNASIWMSLSQFSEIFFILTIPFFLKR-FGIKKVMLLSLVAWA 292 (418)
T ss_pred HHHHHHHhHHHHHHHhHHHHHHH-hcccccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH-hCcHHHHHHHHHHHH
Confidence 33444444444455666777754 4543 3566888888889999999999999999 899999999999888
Q ss_pred HHHHHHHHhhhccccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhhchhhhhhhhhhccCCCCCchhhhhh
Q 007580 148 AGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHL 227 (597)
Q Consensus 148 ~g~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~R 227 (597)
++..++..... +..+...+++.+++.|++.+...++...+++|.+|+++ |
T Consensus 293 v~~~l~~~~~~------------------------~~~~~~~l~l~~~l~g~~~~~~~~~~~~~i~~~~p~~~------~ 342 (418)
T TIGR00889 293 LRFGFFAYGDP------------------------EYFGYALLFLSMIVYGCAFDFFNISGSVFVEKEVPVHI------R 342 (418)
T ss_pred HHHHHHHHcCc------------------------chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHH------H
Confidence 87766665311 00134567778899999999988999999999999998 9
Q ss_pred hhHHHHHH-HHHHHHHHHHHHHHHHhhhc------cchHHHHHHHHHHHHHHHHHHHHhcC
Q 007580 228 DRFFNFFY-LSVTVGAIVAFTLVVYIQME------HGWGSAFGALAIAMGISNMLFFIGTP 281 (597)
Q Consensus 228 ~~~~~~~~-~~~~lg~~l~p~i~~~i~~~------~gw~~~f~i~~~~~~~~~~~~~~~~~ 281 (597)
++.+++++ ....+|..+||+++|++.++ +||++.|.+.+++.+++.++++...+
T Consensus 343 g~~~g~~~~~~~~lg~~iGp~l~G~l~~~~g~~~~~~~~~~f~~~~~~~~i~~~l~~~~~~ 403 (418)
T TIGR00889 343 ASAQGLFTLMCNGFGSLLGYILSGVMVEKMFAYGTFDWQTMWLFFAGYIAILAVLFMIFFK 403 (418)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHhccccCCchHHHHHHHHHHHHHHHHHHHHHhC
Confidence 99999987 56789999999999999887 46999999888776666665555554
No 127
>COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism]
Probab=99.39 E-value=3.3e-10 Score=120.05 Aligned_cols=184 Identities=12% Similarity=0.096 Sum_probs=133.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHhhhhHHHhhcc---cchHHHH-HHHHHHHH
Q 007580 72 LFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAY---LGRYWTI-AIFTTIYL 147 (597)
Q Consensus 72 ~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~lsD~~---~GR~~~~-~~~~~l~~ 147 (597)
+.-.+..+..++.+-.+..++..|.++.+|+++..+|.+..+.-+.=++.-|+.|.++||. |||+|-. +.+.+.++
T Consensus 15 i~Yg~gd~~~~~~~~~~~~yLl~fYTdv~Gis~~~aG~iflv~RiiDAi~DP~~G~i~D~t~~r~GrfRP~lL~g~ip~~ 94 (467)
T COG2211 15 IGYGLGDFASNFAFGIVVLYLLFFYTDVFGLSAALAGTIFLVARIIDAITDPIMGFIVDRTRSRWGRFRPWLLWGAIPFA 94 (467)
T ss_pred HhhcchhhHHHHHHHHHHHHHHHHHhcccCCcHHHHHHHHHHHHHHHHHhcchheeeecccccccccccHHHHHHhHHHH
Confidence 3333445555666667778899999999999999999999999999999999999999983 7876655 45567777
Q ss_pred HHHHHHHHhhhccccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhhchhhhhhhhhhccCCCCCchhhhhh
Q 007580 148 AGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHL 227 (597)
Q Consensus 148 ~g~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~R 227 (597)
+..+++..+.. .+. +......++.-.+.+++...+.....++.+++.++.++ |
T Consensus 95 i~~~l~F~~p~---------~~~-------------~~k~~ya~vtY~l~~l~YT~vniPy~al~~~iT~d~~E-----R 147 (467)
T COG2211 95 IVAVLLFITPD---------FSM-------------TGKLIYALVTYMLLGLGYTLVNIPYGALGPEITQDPQE-----R 147 (467)
T ss_pred HHHHHHHcCCC---------ccc-------------CcchHHHHHHHHHHHHHHHheeCchhhcchhhcCCHHH-----H
Confidence 77777776521 010 02345556666788999999999999999999875432 9
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhhh-------ccchHHHHHHHHHHHHHHHHHHHHhcCc
Q 007580 228 DRFFNFFYLSVTVGAIVAFTLVVYIQM-------EHGWGSAFGALAIAMGISNMLFFIGTPL 282 (597)
Q Consensus 228 ~~~~~~~~~~~~lg~~l~p~i~~~i~~-------~~gw~~~f~i~~~~~~~~~~~~~~~~~~ 282 (597)
.+..++.....++|..+...+...+.. ..||+..-.+.+++..+..+.++...++
T Consensus 148 ~~l~s~R~~~~~~g~~l~~~~~~plv~~~g~~~~~~g~~~~~~~~~vi~~i~~l~~~~~v~E 209 (467)
T COG2211 148 ASLTSWRMVFASLGGLLVAVLFPPLVKLFGGGDKALGYQGTALVLGVIGVILLLFCFFNVKE 209 (467)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 999999888888887665555444332 3477777777666666666555554443
No 128
>PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional
Probab=99.39 E-value=1.8e-11 Score=133.02 Aligned_cols=175 Identities=17% Similarity=0.130 Sum_probs=124.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHhhhhHHHhhccc--chHHHHH-HHHHHH
Q 007580 70 AALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYL--GRYWTIA-IFTTIY 146 (597)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~lsD~~~--GR~~~~~-~~~~l~ 146 (597)
.++...+..++.....+++..++|.|++++.|++..+++.....+.++..++.+++|+++|| + |||+... ....+.
T Consensus 254 ~~~~~~l~~~~~~~~~~~~~~~~P~~l~~~~g~s~~~~~~~~~~~~~~~~~g~~~~G~l~dr-~~~~r~~~~~~~~~~l~ 332 (452)
T PRK11273 254 LLWYIAIANVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDK-VFRGNRGATGVFFMTLV 332 (452)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HccCCcchHHHHHHHHH
Confidence 46666666677777778888999999999999999899988888889999999999999999 7 5554322 222333
Q ss_pred HHHHHHHHHhhhccccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhhchhhhhhhhhhccCCCCCchhhhh
Q 007580 147 LAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTH 226 (597)
Q Consensus 147 ~~g~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~ 226 (597)
.++.....+... .+....++..++.|.+..+.......+..|.+|++.
T Consensus 333 ~~~~~~~~~~~~--------------------------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~------ 380 (452)
T PRK11273 333 TIATIVYWLNPA--------------------------GNPTVDMACMIVIGFLIYGPVMLIGLHALELAPKKA------ 380 (452)
T ss_pred HHHHHHHHHhcc--------------------------cChHHHHHHHHHHHHHHHhHHHHHHHHHHHHcChhh------
Confidence 333332222100 123333444555555444444444556789999998
Q ss_pred hhhHHHHHHHHHHHHHHH-HHHHHHHhhhccchHHHHHHHHHHHHHHHHHHH
Q 007580 227 LDRFFNFFYLSVTVGAIV-AFTLVVYIQMEHGWGSAFGALAIAMGISNMLFF 277 (597)
Q Consensus 227 R~~~~~~~~~~~~lg~~l-~p~i~~~i~~~~gw~~~f~i~~~~~~~~~~~~~ 277 (597)
|++.+++++...++|+.+ +|.+.|++.++.||++.|++.++..+++++...
T Consensus 381 ~g~~~g~~~~~~~~g~~~~g~~v~g~l~~~~g~~~~f~~~~~~~~~~~~~~~ 432 (452)
T PRK11273 381 AGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLI 432 (452)
T ss_pred hhhHHHHHHHHHHHHHHHhhhhhHHHHHHHhcchHHHHHHHHHHHHHHHHHH
Confidence 999999998888888765 799999999999999999987776665554443
No 129
>PRK09874 drug efflux system protein MdtG; Provisional
Probab=99.38 E-value=2.7e-11 Score=129.32 Aligned_cols=165 Identities=12% Similarity=0.049 Sum_probs=129.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhCCChH---HHHHHHHHHHHHHHHHhhhhHHHhhcccchHHHHHHHHHHHHHHHHHHHH
Q 007580 79 MAERMAYFGLSVNMVTFMFYVMHKSFA---DSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITL 155 (597)
Q Consensus 79 ~~~~~~~~~~~~~l~~yl~~~~~~s~~---~a~~~~~~~~~~~~~~~~~~G~lsD~~~GR~~~~~~~~~l~~~g~~~~~~ 155 (597)
++.......+.+.++.|+.+..+.... ..+.+...+.++..++.++.|+++|| +|||+++.++.++..++.+.+..
T Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~~~~~~~g~l~dr-~g~~~~~~~~~~~~~~~~~~~~~ 307 (408)
T PRK09874 229 LIIQVATGSIAPILTLYVRELAGNVSNIAFISGMIASVPGVAALLSAPRLGKLGDR-IGPEKILITALIFSVLLLIPMSF 307 (408)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-cccchhHHHHHHHHHHHHHHHHH
Confidence 334444455667778888765443222 23455556677788888999999999 89999999888877766665554
Q ss_pred hhhccccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhhchhhhhhhhhhccCCCCCchhhhhhhhHHHHHH
Q 007580 156 CATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFY 235 (597)
Q Consensus 156 ~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~R~~~~~~~~ 235 (597)
. .+...+++.+++.|++.+...+...+.+.+..|++. |++.+++++
T Consensus 308 ~----------------------------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~------~g~~~~~~~ 353 (408)
T PRK09874 308 V----------------------------QTPLQLGILRFLLGAADGALLPAVQTLLVYNSSNQI------AGRIFSYNQ 353 (408)
T ss_pred h----------------------------ccHHHHHHHHHHHHhhhHhhHHHHHHHHHHhCCccc------ceeeehHHH
Confidence 3 244567778889999999999999999999998888 999999999
Q ss_pred HHHHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHHH
Q 007580 236 LSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFI 278 (597)
Q Consensus 236 ~~~~lg~~l~p~i~~~i~~~~gw~~~f~i~~~~~~~~~~~~~~ 278 (597)
....+|..+||.++|++.+..||++.|++.+++.+++.++.+.
T Consensus 354 ~~~~~g~~~gp~~~G~l~~~~g~~~~f~~~~~~~l~~~~~~~~ 396 (408)
T PRK09874 354 SFRDIGNVTGPLMGAAISANYGFRAVFLVTAGVVLFNAVYSWN 396 (408)
T ss_pred HHHHHHHHhhHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999988877766655544
No 130
>TIGR00880 2_A_01_02 Multidrug resistance protein.
Probab=99.37 E-value=4.7e-12 Score=112.89 Aligned_cols=132 Identities=20% Similarity=0.222 Sum_probs=113.5
Q ss_pred HHHHHHHHHHhhhhHHHhhcccchHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCcccccccccCCCCCccchhHHHHH
Q 007580 112 NNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLY 191 (597)
Q Consensus 112 ~~~~~~~~~~~~~~G~lsD~~~GR~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~l~ 191 (597)
..+.++..++.++.|+++|| +|||+.+..+..+..++.+.+... .+...++
T Consensus 5 ~~~~~~~~~~~~~~g~~~d~-~g~~~~~~~~~~~~~~~~~~~~~~----------------------------~~~~~~~ 55 (141)
T TIGR00880 5 AGYALGQLIYSPLSGLLTDR-FGRKPVLLVGLFIFVLSTAMFALS----------------------------SNITVLI 55 (141)
T ss_pred EeehhHHHHHHhhHHHHHhh-cchhHHHHHHHHHHHHHHHHHHHh----------------------------ccHHHHH
Confidence 34567788899999999999 899999999988888887777654 3566778
Q ss_pred HHHHHHHHhhhchhhhhhhhhhccCCCCCchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHH
Q 007580 192 TVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGI 271 (597)
Q Consensus 192 ~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~R~~~~~~~~~~~~lg~~l~p~i~~~i~~~~gw~~~f~i~~~~~~~ 271 (597)
+.+++.|++.+...+....++.|.+|+++ |++..++.+....+|..++|.+.+++.+..+|++.|++.++..++
T Consensus 56 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 129 (141)
T TIGR00880 56 IARFLQGFGAAFALVAGAALIADIYPPEE------RGVALGLMSAGIALGPLLGPPLGGVLAQFLGWRAPFLFLAILALA 129 (141)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHCChhh------hhHHHHHHHHhHHHHHHHhHHhHHHHhcccchHHHHHHHHHHHHH
Confidence 88999999999999999999999999998 999999999999999999999999999989999999887776665
Q ss_pred HHHHHHH
Q 007580 272 SNMLFFI 278 (597)
Q Consensus 272 ~~~~~~~ 278 (597)
..+....
T Consensus 130 ~~~~~~~ 136 (141)
T TIGR00880 130 AFILLAF 136 (141)
T ss_pred HHHHHhh
Confidence 5554443
No 131
>PRK11663 regulatory protein UhpC; Provisional
Probab=99.37 E-value=3e-11 Score=130.56 Aligned_cols=178 Identities=16% Similarity=0.110 Sum_probs=124.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHhhhhHHHhhccc--c-hHHHHHHHHHHH
Q 007580 70 AALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYL--G-RYWTIAIFTTIY 146 (597)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~lsD~~~--G-R~~~~~~~~~l~ 146 (597)
.++.+.+..++..+.++++..++|.|+.+++|++..+++...+.+.++..++.+++|+++|| + + |++......+..
T Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~a~~~~~~~~~~~~~g~~~~g~l~dr-~~~~~r~~~~~~~~~~~ 322 (434)
T PRK11663 244 YIWLLSFSYVLVYVVRAAINDWGNLYMSETLGVDLVTANSAVSMFELGGFIGALVAGWGSDK-LFNGNRGPMNLIFAAGI 322 (434)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHhhhHHH-hccCCccHHHHHHHHHH
Confidence 35555555666677777888899999998999999999999999999999999999999999 6 2 333222221111
Q ss_pred HHHHHHHHHhhhccccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhhchhhhhhhhhhccCCCCCchhhhh
Q 007580 147 LAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTH 226 (597)
Q Consensus 147 ~~g~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~ 226 (597)
.+....+..... .+.....+..++.|++..+.........+|.+|+++
T Consensus 323 ~~~~~~~~~~~~--------------------------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~------ 370 (434)
T PRK11663 323 LLSVGSLWLMPF--------------------------ASYVMQAACFFTIGFFVFGPQMLIGMAAAECSHKEA------ 370 (434)
T ss_pred HHHHHHHHHccc--------------------------ccHHHHHHHHHHHHHHHhhHHHHHHHHHHhcccHhh------
Confidence 111111111100 122223333344454444333444566789999888
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHhc
Q 007580 227 LDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGT 280 (597)
Q Consensus 227 R~~~~~~~~~~~~lg~~l~p~i~~~i~~~~gw~~~f~i~~~~~~~~~~~~~~~~ 280 (597)
|++..++.+...++|..++|.+.|++.+..||+..|++.+++.+++.+..+...
T Consensus 371 ~g~~~g~~~~~~~~g~~~~p~~~g~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~ 424 (434)
T PRK11663 371 AGAATGFVGLFAYLGAALSGYPLAKVLEIWHWTGFFVVISIAAGISALLLLPFL 424 (434)
T ss_pred HHhHHHHHHHHHHHHHHHhcccHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999988887766655544433
No 132
>TIGR00893 2A0114 d-galactonate transporter.
Probab=99.37 E-value=3.9e-11 Score=126.40 Aligned_cols=178 Identities=13% Similarity=-0.000 Sum_probs=128.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHhhhhHHHhhcccchHHHH-HHHHHHHHH
Q 007580 70 AALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTI-AIFTTIYLA 148 (597)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~lsD~~~GR~~~~-~~~~~l~~~ 148 (597)
.++..++..++.....+.+..+++.|+.+.+|.+..++++......++..++.+++|+++|| +|||+.. ........+
T Consensus 216 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~~ 294 (399)
T TIGR00893 216 RVWGLALGQFLVNIGLGFFLTWFPTYLVQERGLSILEAGFMASLPGIVGFIGMILGGRLSDL-LLRRGKSLVFARKTAII 294 (399)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhcccHHHhhHHHHHHHHHHHHHHHHHHHHHHH-HhhcccchhHHHHHHHH
Confidence 46666777777788888888999999999999999999999999999999999999999999 8988611 111111111
Q ss_pred HHHHHHHhhhccccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhhchhhhhhhhhhccCCCCCchhhhhhh
Q 007580 149 GLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLD 228 (597)
Q Consensus 149 g~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~R~ 228 (597)
+.+...+........ .+.... +...+.+.+..+..+...++.+|.+|+++ |+
T Consensus 295 ~~~~~~~~~~~~~~~---------------------~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~g 346 (399)
T TIGR00893 295 AGLVLSLLMFATNYV---------------------NIPYAA-LALVALGFFGLGAGAIGWALISDNAPGNI------AG 346 (399)
T ss_pred HHHHHHHHHHHhccc---------------------hhHHHH-HHHHHHHHhchhhhhHHHHHHHhhcChhH------HH
Confidence 111111110000000 122223 33333344444478899999999999999 99
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhhccc-hHHHHHHHHHHHHHHHHHH
Q 007580 229 RFFNFFYLSVTVGAIVAFTLVVYIQMEHG-WGSAFGALAIAMGISNMLF 276 (597)
Q Consensus 229 ~~~~~~~~~~~lg~~l~p~i~~~i~~~~g-w~~~f~i~~~~~~~~~~~~ 276 (597)
+.+++++...++|..++|.+.+++.+..| |++.|++.++..+++.++.
T Consensus 347 ~~~~~~~~~~~~g~~~~~~i~g~l~~~~g~~~~~~~~~~~~~~~~~~~~ 395 (399)
T TIGR00893 347 LTGGLINSLGNLGGIVGPIVIGAIAATTGSFAGALMVVAALALIGALSY 395 (399)
T ss_pred HHHHHHHHHHHHhhhhhhHHhhhhccCCCchhHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999988 9999988777666655544
No 133
>KOG4686 consensus Predicted sugar transporter [Carbohydrate transport and metabolism]
Probab=99.36 E-value=4.3e-12 Score=122.64 Aligned_cols=156 Identities=13% Similarity=0.183 Sum_probs=124.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHhhhhHHHhhcccchHHHHHHHHHHHHHH
Q 007580 70 AALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAG 149 (597)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~lsD~~~GR~~~~~~~~~l~~~g 149 (597)
...+.++..|-..+. |---..+..+...+.++..++..++.+.|..-..+.+.++|||.||.+|-|..-++-+.+..+|
T Consensus 45 ~lv~mc~lgfgsyfc-yd~p~alq~~fk~d~ni~~akftLlYsvYSwPNvVlcffgGflidr~fgir~gtii~~~fv~~G 123 (459)
T KOG4686|consen 45 ALVFMCLLGFGSYFC-YDAPGALQIDFKLDSNIEYAKFTLLYSVYSWPNVVLCFFGGFLIDRRFGIRLGTIILCIFVFLG 123 (459)
T ss_pred HHHHHHHhcccceee-cCCchhhhhhhhcccccceeeeeeeeeeccCCCEEEeeecceeehhhhhhhHHHHHHHHHHHHH
Confidence 444455544544444 3333456677777888888888999999999999999999999999999887766666666777
Q ss_pred HHHHHHhhhccccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhhchhhhhhhhhhccCCCCCchhhhhhhh
Q 007580 150 LTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDR 229 (597)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~R~~ 229 (597)
-++.+.-... ..+++...+|++.|+|.-....+...+..-+|..++ ...
T Consensus 124 qliFa~Ggi~-------------------------~aFw~M~~GRF~FGIGgESlAVaQN~yav~wFKGKE------Ln~ 172 (459)
T KOG4686|consen 124 QLIFAAGGIS-------------------------HAFWTMLAGRFLFGIGGESLAVAQNKYAVYWFKGKE------LNF 172 (459)
T ss_pred HHHHHhchHH-------------------------HHHHHHHhhheeeccCchhhhhhhcceeEEEecCcc------ccc
Confidence 7776643221 467899999999999998888899999999999999 999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhccc
Q 007580 230 FFNFFYLSVTVGAIVAFTLVVYIQMEHG 257 (597)
Q Consensus 230 ~~~~~~~~~~lg~~l~p~i~~~i~~~~g 257 (597)
.|++......+|..+-..+.+++.++.+
T Consensus 173 vfGlqlSvAR~GstvNf~lm~~ly~~~~ 200 (459)
T KOG4686|consen 173 VFGLQLSVARLGSTVNFLLMPFLYDTMG 200 (459)
T ss_pred hhhHHHHHHHhhceeeeeecHHHHHHHH
Confidence 9999988889999888788888877654
No 134
>TIGR00883 2A0106 metabolite-proton symporter. This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc.
Probab=99.36 E-value=1.3e-11 Score=130.29 Aligned_cols=167 Identities=15% Similarity=0.083 Sum_probs=130.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHhhhhHHHhhcccchHHHHHHHHHHHHH
Q 007580 69 IAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLA 148 (597)
Q Consensus 69 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~lsD~~~GR~~~~~~~~~l~~~ 148 (597)
+.++...+..++.....+.+..+++.|+++++|.+..+.+.......++..++.+++|+++|| +|||+.+.++..+..+
T Consensus 219 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr-~g~~~~~~~~~~~~~~ 297 (394)
T TIGR00883 219 KPFLLGLGLVIATTTTFYLITTYLPTYLTQTLGLSANSALLVLMLSLILFFITIPLSGALSDR-IGRRPVLIIFTVLAAL 297 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHH-hchHHHHHHHHHHHHH
Confidence 345666666777777878888899999999999999999998899999999999999999999 8999987765544433
Q ss_pred HH-HHH-HHhhhccccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhhchhhhhhhhhhccCCCCCchhhhh
Q 007580 149 GL-TGI-TLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTH 226 (597)
Q Consensus 149 g~-~~~-~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~ 226 (597)
.. ... ..... .+...+++...+.+++.+...+...+++.|.+|+++
T Consensus 298 ~~~~~~~~~~~~--------------------------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~------ 345 (394)
T TIGR00883 298 LAVPLLMALLDS--------------------------GSFTLFFFLVLGLALIGGMYTGPMGSFLPELFPTEV------ 345 (394)
T ss_pred HHHHHHHHHhcC--------------------------CchHHHHHHHHHHHHHHHHHhhhHHHHHHHhCCccc------
Confidence 22 111 11100 234556667788889888899999999999999998
Q ss_pred hhhHHHH-HHHHHHHHHHHHHHHHHHhhhccc-hHHHHHHHHHH
Q 007580 227 LDRFFNF-FYLSVTVGAIVAFTLVVYIQMEHG-WGSAFGALAIA 268 (597)
Q Consensus 227 R~~~~~~-~~~~~~lg~~l~p~i~~~i~~~~g-w~~~f~i~~~~ 268 (597)
|++++++ +.....+|..++|.++|++.++.| |++.++..+..
T Consensus 346 ~~~~~~~~~~~~~~~g~~~~p~~~g~l~~~~g~~~~~~~~~~~~ 389 (394)
T TIGR00883 346 RYTGASLAYNLAGAIFGGFAPYIAAALVAMTGDWYAIGYYLAAL 389 (394)
T ss_pred eeeEeeehhHhHHHHHhhHHHHHHHHHHHHcCcchhHHHHHHHH
Confidence 8888887 556677899999999999999888 88776655543
No 135
>PRK03893 putative sialic acid transporter; Provisional
Probab=99.35 E-value=2.8e-11 Score=132.85 Aligned_cols=151 Identities=17% Similarity=0.135 Sum_probs=118.1
Q ss_pred HHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHhhhhHHHhhcccchHHHHHHHHHHHHHHHHHHHHhhhccccCCC
Q 007580 86 FGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPN 165 (597)
Q Consensus 86 ~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~lsD~~~GR~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~ 165 (597)
+.+..++|.|+++++|++..+++...+.+.++..++.+++|+++|| +|||+++.++.++..++.++......
T Consensus 292 ~~~~~~lp~~l~~~~g~~~~~~g~~~~~~~~~~~~g~~~~g~l~dr-~g~~~~~~~~~~~~~~~~~~~~~~~~------- 363 (496)
T PRK03893 292 WPIQALLPTYLKTDLGYDPHTVANVLFFSGFGAAVGCCVGGFLGDW-LGTRKAYVCSLLISQLLIIPVFAIGG------- 363 (496)
T ss_pred chHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hcchHHHHHHHHHHHHHHHHHhhccc-------
Confidence 3466788999988999999999999999999999999999999999 89999988887665555443332210
Q ss_pred CCcccccccccCCCCCccchhHHHHHHHHHHHHHhhhchhhhhhhhhhccCCCCCchhhhhhhhHHHHHHHHHHHHHHHH
Q 007580 166 QDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVA 245 (597)
Q Consensus 166 ~~~c~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~R~~~~~~~~~~~~lg~~l~ 245 (597)
.+...+.+..++.++...+..+..++++.|.+|++. |++.+++++...++|..+|
T Consensus 364 -------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~g~~~~~~~~~~~~g~~lg 418 (496)
T PRK03893 364 -------------------ANVWVLGLLLFFQQMLGQGISGLLPKLIGGYFDTEQ------RAAGLGFTYNVGALGGALA 418 (496)
T ss_pred -------------------cHHHHHHHHHHHHHHHhcccchhhHHHHHhhCCHHH------hhcccchhhhhhhHHHHHH
Confidence 233333344444444444456677788999999988 9999999999999999999
Q ss_pred HHHHHHhhhccchHHHHHHHHHHH
Q 007580 246 FTLVVYIQMEHGWGSAFGALAIAM 269 (597)
Q Consensus 246 p~i~~~i~~~~gw~~~f~i~~~~~ 269 (597)
|.++|++.+.+||+..+.+.+...
T Consensus 419 p~l~g~l~~~~g~~~~~~~~~~~~ 442 (496)
T PRK03893 419 PILGALIAQRLDLGTALASLSFSL 442 (496)
T ss_pred HHHHHHHhccCChHHHHHHHHHHH
Confidence 999999999999998876655443
No 136
>PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional
Probab=99.35 E-value=6.6e-11 Score=126.40 Aligned_cols=167 Identities=11% Similarity=-0.000 Sum_probs=128.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHhhhhHHHhhcccchHHHHHHHHHHHHHHHHHHH
Q 007580 75 FGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGIT 154 (597)
Q Consensus 75 ~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~lsD~~~GR~~~~~~~~~l~~~g~~~~~ 154 (597)
....++.....+.+..+++.|+.+ .|++..+.+.....+.++..++.++.|+++|| +|||+.+.++.+...++...+.
T Consensus 226 ~~~~~~~~~~~~~~~~~~p~~~~~-~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr-~g~~~~~~~~~~~~~~~~~~~~ 303 (406)
T PRK11551 226 WISYFFTLIVLYFLLNWLPSLLVG-QGLSRSQAGLVQIAFNIGGALGSLLIGALMDR-LRPRRVVLLIYAGILASLAALA 303 (406)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh-CCCChhhhhHHHHHHHHHHHHHHHHHHHHHHH-HhHHHHHHHHHHHHHHHHHHHH
Confidence 333444455566777788888865 79999999999999999999999999999999 8999998887665555554444
Q ss_pred HhhhccccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhhchhhhhhhhhhccCCCCCchhhhhhhhHHHHH
Q 007580 155 LCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFF 234 (597)
Q Consensus 155 ~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~R~~~~~~~ 234 (597)
.. .+...+++..++.|++.++..+...++..|.+|+++ |++.++++
T Consensus 304 ~~----------------------------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~------~g~~~g~~ 349 (406)
T PRK11551 304 AA----------------------------PSFAGMLLAGFAAGLFVVGGQSVLYALAPLFYPTQV------RGTGVGAA 349 (406)
T ss_pred hc----------------------------CcHHHHHHHHHHHHHHHHhHHHHHHHHHHHHcchhh------hhhhhhHH
Confidence 33 233445566677888888888889999999999999 99999999
Q ss_pred HHHHHHHHHHHHHHHHHhhhcc-chHHHHHHHHHHHHHHHHHHH
Q 007580 235 YLSVTVGAIVAFTLVVYIQMEH-GWGSAFGALAIAMGISNMLFF 277 (597)
Q Consensus 235 ~~~~~lg~~l~p~i~~~i~~~~-gw~~~f~i~~~~~~~~~~~~~ 277 (597)
+....+|..++|.+.|++.++. +|...+++.....+++.++.+
T Consensus 350 ~~~~~~g~~~g~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 393 (406)
T PRK11551 350 VAVGRLGSMAGPLLAGQLLALGRSTVGVIGASIPVILVAALAAL 393 (406)
T ss_pred HHhhhHHHHHHhhhHhhhhccCCchHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999998864 456666655555544444433
No 137
>PRK09705 cynX putative cyanate transporter; Provisional
Probab=99.34 E-value=1.2e-10 Score=124.15 Aligned_cols=176 Identities=15% Similarity=0.043 Sum_probs=135.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHhhhhHHHhhcccchHHHHHHHHHHHHHHH
Q 007580 71 ALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGL 150 (597)
Q Consensus 71 ~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~lsD~~~GR~~~~~~~~~l~~~g~ 150 (597)
.+.+.+..++..++++++..+++.|+.+ +|.+..+++...+.+.++..++.++.|+++|| +|||+.+.++..+..++.
T Consensus 207 ~~~l~~~~~~~~~~~~~~~~~lp~~l~~-~g~s~~~ag~~~~~~~i~~i~g~~~~g~l~~r-~~~~~~~~~~~~l~~~~~ 284 (393)
T PRK09705 207 AWTLGVYFGLINGGYASLIAWLPAFYIE-IGASAQYSGSLLALMTLGQAAGALLMPAMARH-QDRRKLLMLALVLQLVGF 284 (393)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCCChhhhhHHHHHHHHHHHHHHHHHHHHHhh-ccchHHHHHHHHHHHHHH
Confidence 4445555566677888888999999976 89999999999999999999999999999999 899999988877776666
Q ss_pred HHHHHhhhccccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhhchhhhhhhhhhccCC-CCCchhhhhhhh
Q 007580 151 TGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFD-ERSKDYKTHLDR 229 (597)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~~~-~~~~~~~~~R~~ 229 (597)
..+.... .+...+. .++.|++.+...+.......+.++ +++ |++
T Consensus 285 ~~~~~~~---------------------------~~~~~~~--~~l~g~g~g~~~~~~~~~~~~~~~~~~~------~g~ 329 (393)
T PRK09705 285 CGFIWLP---------------------------LQLPVLW--AMVCGLGLGGAFPLCLLLALDHSVQPAI------AGK 329 (393)
T ss_pred HHHHHcc---------------------------chHHHHH--HHHHHHhccchHHHHHHHHHhhcCCHHH------HHH
Confidence 5544321 1111222 245688888888887777778886 445 899
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhccc-hHHHHHHHHHHHHHHHHHHHHhcCcc
Q 007580 230 FFNFFYLSVTVGAIVAFTLVVYIQMEHG-WGSAFGALAIAMGISNMLFFIGTPLY 283 (597)
Q Consensus 230 ~~~~~~~~~~lg~~l~p~i~~~i~~~~g-w~~~f~i~~~~~~~~~~~~~~~~~~~ 283 (597)
.+++.+...+++..++|.+.|++.|..| |...|++.+...++..++.+...++.
T Consensus 330 ~~g~~~~~~~~~~~~gp~~~G~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 384 (393)
T PRK09705 330 LVAFMQGIGFIIAGLAPWFSGVLRSISGNYLMDWAFHALCVVGLMIITLRFAPAR 384 (393)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHhcccc
Confidence 9999999999999999999999999876 78888877776666665555555443
No 138
>PRK03545 putative arabinose transporter; Provisional
Probab=99.34 E-value=1.4e-10 Score=123.47 Aligned_cols=170 Identities=15% Similarity=-0.040 Sum_probs=129.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHhhhhHHHhhcccchHHHHHHHHHHHHHHHHHHH
Q 007580 75 FGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGIT 154 (597)
Q Consensus 75 ~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~lsD~~~GR~~~~~~~~~l~~~g~~~~~ 154 (597)
.+..++.....++...++++|+.+.+|.+..++++....+.++..++.++.|+++|| +|||+.+ ++..+..++.....
T Consensus 211 ~~~~~~~~~~~~~~~~~~~~~l~~~~g~s~~~~~~~~~~~~~~~~~g~~~~g~l~dr-~~~~~~~-~~~~~~~~~~~~l~ 288 (390)
T PRK03545 211 YLLTVVVVTAHFTAYSYIEPFVQQVAGLSENFATLLLLLFGGAGIIGSVLFSRLGNR-HPSGFLL-IAIALLLVCLLLLL 288 (390)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHHHHHHHhhc-cchhHHH-HHHHHHHHHHHHHH
Confidence 333444445556666778889988899999999999999999999999999999999 8988654 44444333333322
Q ss_pred HhhhccccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhhchhhhhhhhhhccCCCCCchhhhhhhhHHHHH
Q 007580 155 LCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFF 234 (597)
Q Consensus 155 ~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~R~~~~~~~ 234 (597)
... .+...+++..++.|++.+...+...+.+.+..| +. |+++++++
T Consensus 289 ~~~---------------------------~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~-~~------~~~~~g~~ 334 (390)
T PRK03545 289 PAA---------------------------NSEWHLSVLSIFWGIAIMCIGLAMQVKVLKLAP-DA------TDVAMALF 334 (390)
T ss_pred HHh---------------------------chHHHHHHHHHHHHHHHhcchHHHHHHHHHhCC-Cc------HHHHHHHH
Confidence 110 345566677788888888777777788888766 46 88999999
Q ss_pred HHHHHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHhc
Q 007580 235 YLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGT 280 (597)
Q Consensus 235 ~~~~~lg~~l~p~i~~~i~~~~gw~~~f~i~~~~~~~~~~~~~~~~ 280 (597)
+....+|..+||.++|++.++.|++..|++.+++.+++++......
T Consensus 335 ~~~~~~g~~~G~~~~G~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 380 (390)
T PRK03545 335 SGIFNIGIGAGALLGNQVSLHLGLSSIGYVGAALALAALVWSILIF 380 (390)
T ss_pred HHHHHHHHHHHHHHHHHHHhccChhHHHHHHHHHHHHHHHHHHHHc
Confidence 9999999999999999999999999999988887777666655433
No 139
>PRK09528 lacY galactoside permease; Reviewed
Probab=99.34 E-value=2.2e-11 Score=130.87 Aligned_cols=161 Identities=12% Similarity=0.096 Sum_probs=128.5
Q ss_pred HHHHHHHHHHHHHHHHhh---CCChHHHHHHHHHHHHHHHHHhhhhHHHhhcccchHHHHHHHHHHHHHHHHHHHHhhhc
Q 007580 83 MAYFGLSVNMVTFMFYVM---HKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATM 159 (597)
Q Consensus 83 ~~~~~~~~~l~~yl~~~~---~~s~~~a~~~~~~~~~~~~~~~~~~G~lsD~~~GR~~~~~~~~~l~~~g~~~~~~~~~~ 159 (597)
+.+.....+++.|+.+.+ +.+..+.+.+.+...++..++.+++|+++|| +|||+.+.++.++..++..++.++
T Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr-~g~~~~~~~~~~l~~~~~~l~~~~--- 312 (420)
T PRK09528 237 CFYDVFDQQFPNFFASFFATPEQGTRVFGYLNSFQVFLEALIMFFAPFIINR-IGAKNALLLAGTIMAVRIIGSGFA--- 312 (420)
T ss_pred HHHHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCcchhhHHHHHHHHHHHHHHHhc---
Confidence 333334445677776543 5566677888888888899999999999999 899999999988888887777765
Q ss_pred cccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhhchhhhhhhhhhccCCCCCchhhhhhhhHHHH-HHHHH
Q 007580 160 KVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNF-FYLSV 238 (597)
Q Consensus 160 ~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~R~~~~~~-~~~~~ 238 (597)
.+...+++.+++.+++.+...+....++.|.+|++. |++..+. ++...
T Consensus 313 -------------------------~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~------~a~~~~~~~~~~~ 361 (420)
T PRK09528 313 -------------------------TGPLEVSILKLLHAFEVPFLLVGVFKYITLNFDVRL------SATIYLVGFQFAK 361 (420)
T ss_pred -------------------------ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccc------eeeeeeehHHHHH
Confidence 355677788889999988888888899999999887 7777655 67778
Q ss_pred HHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHHH
Q 007580 239 TVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFI 278 (597)
Q Consensus 239 ~lg~~l~p~i~~~i~~~~gw~~~f~i~~~~~~~~~~~~~~ 278 (597)
.+|..++|.+.|++.+..||+..|.+.+++.++..++.+.
T Consensus 362 ~lg~~ig~~~~G~l~~~~G~~~~f~~~~~~~~i~~~~~~~ 401 (420)
T PRK09528 362 QLGAVFLSTLAGNLYDSIGFQGTYLILGGIVLLFTLISVF 401 (420)
T ss_pred HHHHHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHH
Confidence 8999999999999999999999999877766655544443
No 140
>PRK12382 putative transporter; Provisional
Probab=99.33 E-value=5.2e-11 Score=126.67 Aligned_cols=161 Identities=14% Similarity=0.091 Sum_probs=130.5
Q ss_pred HHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHhhhhHHHhhcccchHHHHHHHHHHHHHHHHHHHHhhhc
Q 007580 80 AERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATM 159 (597)
Q Consensus 80 ~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~lsD~~~GR~~~~~~~~~l~~~g~~~~~~~~~~ 159 (597)
+..+.+..+..+.+.|+.+ .+++. .+.....+.++..++.++.|++.|| +|||+.+.++..+..++..+..+.
T Consensus 227 l~~~~~~~~~~~~~~~~~~-~~~~~--~~~~~~~~~~~~~~~~~~~g~l~~r-~g~~~~~~~~~~~~~~~~~~~~~~--- 299 (392)
T PRK12382 227 LQGVGFAVIGTFVSLYFAS-KGWAM--AGFTLTAFGGAFVLMRVLFGWMPDR-FGGVKVAIVSLLVETVGLLLLWLA--- 299 (392)
T ss_pred HHHHHHhHHHHHHHHHHHh-cCCch--hHHHHHHHHHHHHHHHHHHHHHHHh-cCCCeehHHHHHHHHHHHHHHHHc---
Confidence 3445555666777778754 46543 4556667778888999999999999 899999999888888877766554
Q ss_pred cccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhhchhhhhhhhhhccCCCCCchhhhhhhhHHHHHHHHHH
Q 007580 160 KVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVT 239 (597)
Q Consensus 160 ~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~R~~~~~~~~~~~~ 239 (597)
++...+++..++.|++.+...+...+...|.+|+++ |++.+++++....
T Consensus 300 -------------------------~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~------~g~~~g~~~~~~~ 348 (392)
T PRK12382 300 -------------------------PTAWVALAGAALTGAGCSLIFPALGVEVVKRVPSQV------RGTALGGYAAFQD 348 (392)
T ss_pred -------------------------ccHHHHHHHHHHHHHHHHhHHHHHHHHHHHhcCHHH------HHHHHHHHHHHHH
Confidence 344566778888999999888888889999999988 9999999999999
Q ss_pred HHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHHH
Q 007580 240 VGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFI 278 (597)
Q Consensus 240 lg~~l~p~i~~~i~~~~gw~~~f~i~~~~~~~~~~~~~~ 278 (597)
+|..++|.+.+++.++.||++.|.+.++..+++.++.+.
T Consensus 349 ~g~~ig~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~ 387 (392)
T PRK12382 349 IAYGVSGPLAGMLATSFGYPSVFLAGAISAVLGIIVTIL 387 (392)
T ss_pred HHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHh
Confidence 999999999999999999999999988877766665544
No 141
>TIGR00902 2A0127 phenyl proprionate permease family protein. This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules.
Probab=99.32 E-value=1.8e-10 Score=122.18 Aligned_cols=168 Identities=10% Similarity=-0.073 Sum_probs=142.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHhhhhHHHhhcccchHHHHHHHHHHHHHH
Q 007580 70 AALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAG 149 (597)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~lsD~~~GR~~~~~~~~~l~~~g 149 (597)
.++..++..++...+.+...++.++|+++ +|.+..+.+...+...++..++.++.+++.|| +|+|+.+.++.+...+.
T Consensus 206 ~~~~~l~~~~l~~~~~~~~~~~~~~~l~~-~g~s~~~~g~l~~~~~~~~i~~~~~~~~l~~r-~g~~~~l~~~~~~~~~~ 283 (382)
T TIGR00902 206 MNLRFLAAVCLIQGAHAAYYGFSAIYWQA-AGISASATGLLWGIGVLAEIIIFAFSNKLFQN-CSARDLLLISAIACVGR 283 (382)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-CCCCHhHHHHHHHHHHHHHHHHHHHhHHHHhh-CCHHHHHHHHHHHHHHH
Confidence 45555666677777778888899999964 89999999999888999999999999999999 89999999999999998
Q ss_pred HHHHHHhhhccccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhhchhhhhhhhhhccCCCCCchhhhhhhh
Q 007580 150 LTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDR 229 (597)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~R~~ 229 (597)
.+.++.+ ++...+++.+.+.|+..+...+....++.+. |+++ |++
T Consensus 284 ~~~~~~~----------------------------~~~~~~~~~q~l~g~~~~~~~~~~~~~i~~~-~~~~------~~~ 328 (382)
T TIGR00902 284 WAIIGAI----------------------------EAFPLIFLLQILHCGTFAVCHLAAMRYIAAQ-PGSE------IAK 328 (382)
T ss_pred HHHHHhH----------------------------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-CHhh------HHH
Confidence 8887765 5677888899999999999999999999988 8877 899
Q ss_pred HHHHHH-HHHHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHH
Q 007580 230 FFNFFY-LSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNML 275 (597)
Q Consensus 230 ~~~~~~-~~~~lg~~l~p~i~~~i~~~~gw~~~f~i~~~~~~~~~~~ 275 (597)
+.++++ ....+|..++|.++|++.|+.|+ ..|++.+.+.++++++
T Consensus 329 ~q~~~~~~~~g~g~~~g~~~~G~l~~~~g~-~~~~~~~~~~~~~~~~ 374 (382)
T TIGR00902 329 LQALYNALAMGGLIAIFTAFAGFIYPTLGA-GTFVFMAIIAAAAFFL 374 (382)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccH-HHHHHHHHHHHHHHHH
Confidence 999976 46789999999999999999886 5677666665555443
No 142
>PRK10489 enterobactin exporter EntS; Provisional
Probab=99.32 E-value=8.6e-11 Score=126.19 Aligned_cols=163 Identities=12% Similarity=-0.025 Sum_probs=133.3
Q ss_pred HHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHhhhhHHHhhcccchHHHHHHHHHHHHHHHHHHHHhhhccccCCC
Q 007580 86 FGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPN 165 (597)
Q Consensus 86 ~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~lsD~~~GR~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~ 165 (597)
+++..+++.|+.+.+|.+..+.+++.+.+.++..++.++.++++|| .++++.+..+.++..++.+++.+.
T Consensus 240 ~~~~~~~p~~~~~~~g~~~~~~g~~~~~~~~g~~ig~~~~~~l~~~-~~~~~~l~~~~~~~~~~~~~~~~~--------- 309 (417)
T PRK10489 240 SAVRVLYPALADEVWQMGAAQIGLLYAAVPLGAALGALTSGWLAHS-ARPGLLMLLSTLGSFLAVGLFGLM--------- 309 (417)
T ss_pred HhHHHhhHHHHHhccCCChhHhHHHHHHHHHHHHHHHHHHHHhhhc-cCcchHHHHHHHHHHHHHHHHHcc---------
Confidence 5566788899988899999999999999999999999999999998 788888888877777776666543
Q ss_pred CCcccccccccCCCCCccchhHHHHHHHHHHHHHhhhchhhhhhhhhhccCCCCCchhhhhhhhHHHHHHHHHHHHHHHH
Q 007580 166 QDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVA 245 (597)
Q Consensus 166 ~~~c~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~R~~~~~~~~~~~~lg~~l~ 245 (597)
++....+++.++.|++.+...+...+++.|.+|++. |++.+++++...++|..+|
T Consensus 310 -------------------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~------~g~~~g~~~~~~~~g~~~g 364 (417)
T PRK10489 310 -------------------PMWILAVLCLALFGYLSAISSLLQYTLLQTQTPDEM------LGRINGLWTAQNVTGDAIG 364 (417)
T ss_pred -------------------chHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCHHH------HHHHHHHHHHHHhhhHhHH
Confidence 345556677788888888877888899999999988 9999999999999999999
Q ss_pred HHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHhcCcc
Q 007580 246 FTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGTPLY 283 (597)
Q Consensus 246 p~i~~~i~~~~gw~~~f~i~~~~~~~~~~~~~~~~~~~ 283 (597)
|.+.|++.+..|++..+++.+...++..++.....+++
T Consensus 365 ~~l~G~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 402 (417)
T PRK10489 365 AALLGGLGAMMTPVASASASGFGLLIIGVLLLLVLGEL 402 (417)
T ss_pred HHHHHHHHHHhchhhHHHHHHHHHHHHHHHHHHhcccc
Confidence 99999999999998888877766555444444443433
No 143
>TIGR00891 2A0112 putative sialic acid transporter.
Probab=99.32 E-value=4.7e-11 Score=126.87 Aligned_cols=165 Identities=14% Similarity=0.067 Sum_probs=128.4
Q ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHhhhhHHHhhcccchHHHHHHHHHH
Q 007580 66 GGWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTI 145 (597)
Q Consensus 66 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~lsD~~~GR~~~~~~~~~l 145 (597)
++|.....+....++..+...+...+++.|+.+++|++..+.+++...+.++..++.++.|+++|| +|||+.+.++.++
T Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~g~~~~g~l~dr-~g~~~~~~~~~~~ 313 (405)
T TIGR00891 235 KRWPTFVYLVVLVLFANLYSHPIQDLLPTYLKADLGLSPHTVANIVVFSNIGAIVGGCVFGFLGDW-LGRRKAYVCSLLA 313 (405)
T ss_pred hhhHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCchhhhHHHHHH
Confidence 444444444444445555556777788999999999999999999999999999999999999999 8999998888765
Q ss_pred HHHHHHHHHHhhhccccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhhchhhhhhhhhhccCCCCCchhhh
Q 007580 146 YLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKT 225 (597)
Q Consensus 146 ~~~g~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~ 225 (597)
..+........ . .+...+.++.++.+++.++..+...+++.|.+|+++
T Consensus 314 ~~~~~~~~~~~-~--------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----- 361 (405)
T TIGR00891 314 GQLLIIPVFAI-G--------------------------ANVAVLGLGLFFQQMLVQGIWGILPKHLGEYFPTDQ----- 361 (405)
T ss_pred HHHHHHHHHHh-C--------------------------CchHHHHHHHHHHHHHHccchhhHHHHHhhhCCcch-----
Confidence 43322221111 0 234455566677777777778888899999999998
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHhhhccc-hHHHHHH
Q 007580 226 HLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHG-WGSAFGA 264 (597)
Q Consensus 226 ~R~~~~~~~~~~~~lg~~l~p~i~~~i~~~~g-w~~~f~i 264 (597)
|++.+++.+...++|..++|.+.|++.++.| |+..+..
T Consensus 362 -~~~~~g~~~~~~~~g~~~g~~~~g~l~~~~g~~~~~~~~ 400 (405)
T TIGR00891 362 -RAAGLGFTYQLGNLGGALAPIIGALLAQRLDEYGTALAS 400 (405)
T ss_pred -hHHHhhHHHHHHHHHHHHHHHHHHHHHHhccccchhHHh
Confidence 9999999999999999999999999999988 8776654
No 144
>PRK15075 citrate-proton symporter; Provisional
Probab=99.31 E-value=1.1e-10 Score=126.11 Aligned_cols=161 Identities=15% Similarity=0.072 Sum_probs=114.8
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHhhhhHHHhhcccchHHHHHHHHHHH
Q 007580 67 GWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIY 146 (597)
Q Consensus 67 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~lsD~~~GR~~~~~~~~~l~ 146 (597)
+|+.....++..++....++++..++|.|+++.+|++..++++....+.++..++.+++|+++|| +|||+++.++.++.
T Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~Dr-~g~r~~~~~~~~~~ 314 (434)
T PRK15075 236 NWRIVLAGMLMVAMTTVSFYLITVYTPTFGKTVLHLSAADSLLVTLCVGVSNFIWLPIGGALSDR-IGRRPVLIAFTVLA 314 (434)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hcchHHHHHHHHHH
Confidence 34434444444555667778888999999999899999888888888888899999999999999 89999887765443
Q ss_pred HHHHH-HHHHhhhccccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhhchhhhhhhhhhccCCCCCchhhh
Q 007580 147 LAGLT-GITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKT 225 (597)
Q Consensus 147 ~~g~~-~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~ 225 (597)
.+... ....... . .+...+.+..++.+++.+...+....++.|.+|++.
T Consensus 315 ~~~~~~~~~~~~~------~-------------------~~~~~~~~~~~~~~~~~g~~~~~~~~~~~e~~p~~~----- 364 (434)
T PRK15075 315 ILTAYPALSWLVA------A-------------------PSFARMLAVELWLSFLYGSYNGAMVVALTEVMPAEV----- 364 (434)
T ss_pred HHHHHHHHHHHHc------C-------------------CchHHHHHHHHHHHHHHHHHHhhHHHHHHHHCCCCc-----
Confidence 32211 1111100 0 122233344455666777766777788999999999
Q ss_pred hhhhHHHHH-HHHHHHHHHHHHHHHHHhhhccchH
Q 007580 226 HLDRFFNFF-YLSVTVGAIVAFTLVVYIQMEHGWG 259 (597)
Q Consensus 226 ~R~~~~~~~-~~~~~lg~~l~p~i~~~i~~~~gw~ 259 (597)
|++++++. +.+..+++.++|.+.+++.++.|+.
T Consensus 365 -rg~~~g~~~~~~~~~~g~~~p~~~g~i~~~~g~~ 398 (434)
T PRK15075 365 -RTAGFSLAYSLATAIFGGFTPAISTWLIHVTGDK 398 (434)
T ss_pred -cchheeHHHHHHHHHHhhhHHHHHHHHHHhcCCc
Confidence 99999985 4444556788999999999988854
No 145
>PRK03633 putative MFS family transporter protein; Provisional
Probab=99.30 E-value=1.9e-10 Score=121.90 Aligned_cols=153 Identities=16% Similarity=0.139 Sum_probs=121.4
Q ss_pred HHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHhhhhHHHhhcccchHHHHHHHHHHHHHHHHHHHHhhhcccc
Q 007580 83 MAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVF 162 (597)
Q Consensus 83 ~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~lsD~~~GR~~~~~~~~~l~~~g~~~~~~~~~~~~~ 162 (597)
+.+.....+++.|+++ .|.+..+++...+.+.++..++.++.|+++|| +|||+++.++.++..++..... .
T Consensus 214 ~~~~~~~~~lp~~~~~-~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr-~~~~~~l~~~~~~~~~~~~~~~-~------ 284 (381)
T PRK03633 214 IVLGSLYGLMPLYLNH-QGMSDASIGFWMALLVSAGILGQWPIGRLADR-FGRLLVLRVQVFVVILGSIAML-S------ 284 (381)
T ss_pred HHHHHHHHHHHHHHHH-cCCCHHHHHHHHHHHHHHHHHHHhhhHHHHHH-cCcHHHHHHHHHHHHHHHHHHh-h------
Confidence 3444455667888865 69999899998999999999999999999999 8999999888777766654432 1
Q ss_pred CCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhhchhhhhhhhhhccCCCCCchhhhhhhhHHHHHHHHHHHHH
Q 007580 163 MPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGA 242 (597)
Q Consensus 163 ~~~~~~c~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~R~~~~~~~~~~~~lg~ 242 (597)
. ..++..+++.|++.+...|...+.+.|..|+++ ++...+.++...++|.
T Consensus 285 -----------------------~-~~~~~~~~l~g~~~~~~~p~~~~~~~~~~~~~~------~~~~~~~~~~~~~lG~ 334 (381)
T PRK03633 285 -----------------------Q-AAMAPALFILGAAGFTLYPVAMAWACEKVEHHE------LVAMNQALLLSYTVGS 334 (381)
T ss_pred -----------------------h-HHHHHHHHHHHHHHHhHHHHHHHHHHccCCHHH------HHHHHHHHHHHHHHHH
Confidence 1 123345667787777888999999999998877 7778888888899999
Q ss_pred HHHHHHHHHhhhccchHHHHHHHHHHHHHHHH
Q 007580 243 IVAFTLVVYIQMEHGWGSAFGALAIAMGISNM 274 (597)
Q Consensus 243 ~l~p~i~~~i~~~~gw~~~f~i~~~~~~~~~~ 274 (597)
.+||.++|++.|+.||++.|.+.+.+.++..+
T Consensus 335 ~igp~~~G~l~~~~g~~~~f~~~~~~~l~~~~ 366 (381)
T PRK03633 335 LLGPSFTAMLMQNYSDNLLFIMIASVSFIYLL 366 (381)
T ss_pred HHHHHHHHHHHHHhCccHHHHHHHHHHHHHHH
Confidence 99999999999999999999987776654443
No 146
>TIGR00897 2A0118 polyol permease family. This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis.
Probab=99.28 E-value=4.4e-10 Score=120.18 Aligned_cols=174 Identities=15% Similarity=0.048 Sum_probs=127.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHhhhhHHHhhcccchHHHHH-HHHHHHHHH
Q 007580 71 ALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIA-IFTTIYLAG 149 (597)
Q Consensus 71 ~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~lsD~~~GR~~~~~-~~~~l~~~g 149 (597)
++...+..++....++++..++|.|++ ++|++..+++.....+.++..++.++.|+++|| +|||+.+. .+.+...++
T Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~p~~~~-~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr-~~~~~~~~~~~~l~~~~~ 301 (402)
T TIGR00897 224 VLLGGMVRIINTIGLFGFAVFLPMFVA-ELGFSTSEWLQIWGTFFFTNIVFNVIFGIVGDK-LGWMNTVRWFGGVGCGIF 301 (402)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-HcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHh-hcchhHHHHHHHHHHHHH
Confidence 455555667777788888899998885 589999999988888999999999999999999 89888764 233323333
Q ss_pred HHHHHHhhhccccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhhchhhhhhhhhhccCCCCCchhhhhhhh
Q 007580 150 LTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDR 229 (597)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~R~~ 229 (597)
.+.+....... ..+...+++..++.|++.+...+. .....|..| ++ |++
T Consensus 302 ~~~l~~~~~~~-----------------------~~~~~~~~~~~~~~G~~~~~~~~~-~~~~~~~~~-~~------~g~ 350 (402)
T TIGR00897 302 TLALYYIPQHF-----------------------GHSFAVALIIAIALGIFLAGYVPL-AAVFPTLAP-KH------KGA 350 (402)
T ss_pred HHHHHHHHHcc-----------------------CCcHHHHHHHHHHHHHHHHHHHHH-HHHHHhhCc-ch------hHH
Confidence 22222211000 023445566777788888776554 455666544 46 999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHH
Q 007580 230 FFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFF 277 (597)
Q Consensus 230 ~~~~~~~~~~lg~~l~p~i~~~i~~~~gw~~~f~i~~~~~~~~~~~~~ 277 (597)
.+++++....+|..++|.+++++.+..||...|++.+++.+++.++..
T Consensus 351 ~~g~~~~~~~lg~~~gp~i~g~l~~~~g~~~~~~~~a~~~~i~~~~~~ 398 (402)
T TIGR00897 351 AMSVLNLSAGLSAFLAPAIAVLFIGFFGAIGVVWIFAALYVVSAFLTA 398 (402)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999988877666555443
No 147
>KOG2325 consensus Predicted transporter/transmembrane protein [General function prediction only]
Probab=99.27 E-value=9.4e-11 Score=124.38 Aligned_cols=190 Identities=13% Similarity=0.054 Sum_probs=145.1
Q ss_pred cccCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hhCCChHHHHHHHHHHHHHHHHHhhhhHHHhhcccch-HHHH
Q 007580 62 LSKTGGWIAALFIFGNEMAERMAYFGLSVNMVTFMFY-VMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGR-YWTI 139 (597)
Q Consensus 62 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~-~~~~s~~~a~~~~~~~~~~~~~~~~~~G~lsD~~~GR-~~~~ 139 (597)
...+.+||.+++..+..|+..+.++.+.+..-+|+++ +.+-+.+-.|+++++..++.+++.++.|+.+.| .|. |+.+
T Consensus 27 ~~~~t~wrsi~l~~~~sfl~~v~~sI~~~s~wpYl~~lD~~A~~~ffG~viaa~slg~~i~~liF~~Ws~k-~~~~k~Pl 105 (488)
T KOG2325|consen 27 DERKTNWRSIYLALLNSFLVAVQFSIYLTSMWPYLQKLDPTATATFFGLVIAASSLGHAIFSLIFGIWSNK-TGSVKKPL 105 (488)
T ss_pred cccCCchHhHHHHHHHHHHHhhhheEEEeecchhhhhcCCCCCcchhhHHHHHHHHHHHhcchhhcccccc-cCCcccCH
Confidence 3456689999999999999999988888877889876 467777788999999999999999999999999 674 7778
Q ss_pred HHHHHHHHHHHHHH-HHhhhccccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhhchhhhhhhhhhccCCC
Q 007580 140 AIFTTIYLAGLTGI-TLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDE 218 (597)
Q Consensus 140 ~~~~~l~~~g~~~~-~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~~~~ 218 (597)
+.+.++.++|.++. +++.. |+ ...++++++|++.|+|.|.. ...-++++|....
T Consensus 106 i~s~ii~~~g~llY~~l~~~-----~~-------------------~~~y~mL~~R~l~Gvg~~n~-a~lR~Y~a~~s~~ 160 (488)
T KOG2325|consen 106 IVSFLIAIIGNLLYLALAYV-----PN-------------------GVKYLMLVARILTGVGVGNF-AVLRAYIADASTV 160 (488)
T ss_pred HHHHHHHHHHHHHHHHHHhc-----cc-------------------chHHHHHHHHHHcCcCcccH-HHHHHHHHhccCc
Confidence 88889999999998 44421 11 25678999999999998764 5678899998888
Q ss_pred CCchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhh----hc---------cchHHHHHHHHHHHHHHHHHHHHhcCcc
Q 007580 219 RSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQ----ME---------HGWGSAFGALAIAMGISNMLFFIGTPLY 283 (597)
Q Consensus 219 ~~~~~~~~R~~~~~~~~~~~~lg~~l~p~i~~~i~----~~---------~gw~~~f~i~~~~~~~~~~~~~~~~~~~ 283 (597)
++ |.++++....+..+|..+||.+...+. +. .-+..+-|+.+++.++.+++..++.++.
T Consensus 161 ~d------R~rA~a~~~~~~vlg~ilGp~~q~~f~~Lg~~G~~i~~~~~~n~YTap~w~m~i~~i~~~v~i~~~f~E~ 232 (488)
T KOG2325|consen 161 ED------RPRAFAATSGGFVLGIILGPTIQLAFTPLGEKGFMILPGLIFNMYTAPAWLMAILWIIYIVIILFFFKEV 232 (488)
T ss_pred cc------hHHHHHHhhhHHHHHHHHhHHHHHHHhhhcCCceEEcCcceEEecchHHHHHHHHHHHHHHHHHhheeec
Confidence 88 999998877777777777777664432 11 1134556666666666666555555543
No 148
>PRK11010 ampG muropeptide transporter; Validated
Probab=99.26 E-value=5.2e-10 Score=122.75 Aligned_cols=171 Identities=11% Similarity=0.084 Sum_probs=126.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHH-HHHHHHHHHhhhhHHHhhcccchHHHHHHHHHHHHHHHHHHHHhh
Q 007580 79 MAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVN-NFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCA 157 (597)
Q Consensus 79 ~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~-~~~~~~~~~~~~~G~lsD~~~GR~~~~~~~~~l~~~g~~~~~~~~ 157 (597)
++..++.+....+.++|+.+++|++..+.+.... ...++..++.+++|+++|| +|||+.+.++.++..++...+....
T Consensus 232 ~l~~~~~~~~~~~~~~~l~~~~G~s~~~~g~~~~~~g~i~~iiG~ll~G~L~dr-~g~~~~l~i~~~l~~l~~l~~~~l~ 310 (491)
T PRK11010 232 VLYKLGDAFAMSLTTTFLIRGVGFDAGEVGLVNKTLGLLATIVGALYGGILMQR-LSLFRALMIFGILQGVSNAGYWLLS 310 (491)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444555556677888988889999999998874 5567899999999999999 8999988776665555443332211
Q ss_pred hccccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhhchhhhhhhhhhccCCCCCchhhhhhhhHHHHHHHH
Q 007580 158 TMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLS 237 (597)
Q Consensus 158 ~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~R~~~~~~~~~~ 237 (597)
.. . .+...+.+..++..++.|...+...++..+..+++. +++.+++.+..
T Consensus 311 ~~----~--------------------~~~~~l~~~~~l~~~~~g~~~~~~~a~~~~l~~~~~------~~t~~gl~~s~ 360 (491)
T PRK11010 311 IT----D--------------------KNLYSMGAAVFFENLCGGMGTAAFVALLMTLCNKSF------SATQFALLSAL 360 (491)
T ss_pred hc----c--------------------ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCC------cHHHHHHHHHH
Confidence 10 0 133334445556555556555667788888999888 78889999999
Q ss_pred HHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHhc
Q 007580 238 VTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGT 280 (597)
Q Consensus 238 ~~lg~~l~p~i~~~i~~~~gw~~~f~i~~~~~~~~~~~~~~~~ 280 (597)
.++|..+++.+.|++.+..||+..|.+.+++.++++++....+
T Consensus 361 ~~lg~~~~~~~~G~l~~~~G~~~~f~~~~~~~l~~l~~~~~~~ 403 (491)
T PRK11010 361 SAVGRVYVGPVAGWFVEAHGWPTFYLFSVAAAVPGLLLLLVCR 403 (491)
T ss_pred HHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999888887777766655543
No 149
>PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions. Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins.
Probab=99.26 E-value=4.6e-10 Score=121.69 Aligned_cols=185 Identities=13% Similarity=0.049 Sum_probs=148.0
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHhhhhHHHhhcccchH--HHHHHHHH
Q 007580 67 GWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRY--WTIAIFTT 144 (597)
Q Consensus 67 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~lsD~~~GR~--~~~~~~~~ 144 (597)
+.+.+...++..++.+-+...+......|.++++|++..+...+.....+...++.+++|++.|| +|.| ++++++.+
T Consensus 279 ~~~~~~~fLia~~l~~dg~~ti~~~~~i~a~~~lg~s~~~l~~~~l~~~i~a~~Ga~~~g~l~~r-~g~k~~~~l~~~l~ 357 (477)
T PF11700_consen 279 KLRQLFLFLIAYFLYSDGVNTIISFAGIYATEVLGMSTTQLIVFGLVVQIVAIIGALLFGWLQDR-FGPKTKRTLLISLI 357 (477)
T ss_pred hChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCCchhHHHHHHHH
Confidence 34566677777788888888899999999999999999998888888899999999999999999 8988 88888877
Q ss_pred HHHHHHHHHHHhhhccccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhhchhhhhhhhhhccCCCCCchhh
Q 007580 145 IYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYK 224 (597)
Q Consensus 145 l~~~g~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~ 224 (597)
++.+-.+.-.+- ..+.... ..+.+.+++.-++.|+..|+.++..-++.+++.|+++
T Consensus 358 ~~~~i~~~g~~G-~~~~~~g-------------------~~~~~~f~~~a~~~G~~~G~~qs~sRs~~~~LiP~g~---- 413 (477)
T PF11700_consen 358 LWIIIPLYGLFG-FWPSFFG-------------------LKSPWEFWVLAVLIGLFMGGIQSASRSLFSRLIPPGR---- 413 (477)
T ss_pred HHHHHHHHHHHH-hhhcccC-------------------cccHHHHHHHHHHHHHHhhhHHHHHHHHHHHhCCCch----
Confidence 663322221110 0000000 0244567777779999999999999999999999999
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHhhhccc-hHHHHHHHHHHHHHHHHHHHH
Q 007580 225 THLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHG-WGSAFGALAIAMGISNMLFFI 278 (597)
Q Consensus 225 ~~R~~~~~~~~~~~~lg~~l~p~i~~~i~~~~g-w~~~f~i~~~~~~~~~~~~~~ 278 (597)
.+.+|++|.+..-..+++||++.|.+.+..| -|+++....+..++++++++.
T Consensus 414 --e~efFgly~i~gk~ss~lGPll~g~i~~~tg~~r~g~~~l~~lf~~gl~ll~~ 466 (477)
T PF11700_consen 414 --EAEFFGLYAITGKASSWLGPLLFGLITDATGSQRYGFLFLLVLFLIGLILLFF 466 (477)
T ss_pred --hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHhh
Confidence 8999999999999999999999999999876 899988777777777666544
No 150
>TIGR00892 2A0113 monocarboxylate transporter 1.
Probab=99.25 E-value=1.9e-10 Score=125.10 Aligned_cols=170 Identities=7% Similarity=-0.033 Sum_probs=132.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHhhhhHHHhhcc-cchHHHHHHHH--HHH
Q 007580 70 AALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAY-LGRYWTIAIFT--TIY 146 (597)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~lsD~~-~GR~~~~~~~~--~l~ 146 (597)
.++..++..++..++++....+++.|+. ++|++..+++...+...++..++.+++|+++||. +++++...++. ++.
T Consensus 242 ~~~~~~~~~~l~~~~~~~~~~~l~~~~~-~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~ 320 (455)
T TIGR00892 242 GFLVYLSGNVIMFLGFFAPIIFLVPYAK-DKGVDEYEAAFLLSIIGFVDIFARPSCGLIAGLKWIRPHVQYLFSFALLFN 320 (455)
T ss_pred hHHHHHHHHHHHHHHccchHHHHHHHHH-HcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCHHHHHHHHHHHHHH
Confidence 3555555666677777788888899986 4799999999999999999999999999999972 23344343333 222
Q ss_pred HHHHHHHHHhhhccccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhhchhhhhhhhhhccCCCCCchhhhh
Q 007580 147 LAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTH 226 (597)
Q Consensus 147 ~~g~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~ 226 (597)
.++.+++... .+...+++.+++.|++.+...++..+++.|.+|+++
T Consensus 321 ~l~~ll~~~~----------------------------~~~~~~~i~~~~~G~~~g~~~~~~~~~~~~~~~~~~------ 366 (455)
T TIGR00892 321 GLTHLLCALA----------------------------GDYTGLVIYCIFFGLSFGSVGALLFEVLMDLVGAQR------ 366 (455)
T ss_pred HHHHHHHHHh----------------------------chHHHHHHHHHHHHHHhchHHHHHHHHHHHHhhHHH------
Confidence 3333333332 355677788899999999999999999999999988
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHhhhcc-chHHHHHHHHHHHHHHHH
Q 007580 227 LDRFFNFFYLSVTVGAIVAFTLVVYIQMEH-GWGSAFGALAIAMGISNM 274 (597)
Q Consensus 227 R~~~~~~~~~~~~lg~~l~p~i~~~i~~~~-gw~~~f~i~~~~~~~~~~ 274 (597)
+++.+++++...++|..+||.++|++.+.. +|++.|++.+++.+++.+
T Consensus 367 ~g~~~g~~~~~~~lg~~igp~i~G~l~~~~g~~~~~f~~~~~~~li~~~ 415 (455)
T TIGR00892 367 FSSAVGLVTIVECCAVLIGPPLAGRLVDATKNYKYIFYASGSIVVSAGL 415 (455)
T ss_pred HhhHHhHHHHHHHHHHHccccceeeeehhcCCcchHHHHhhHHHHHHHH
Confidence 999999999999999999999999999877 599999988876655444
No 151
>TIGR00879 SP MFS transporter, sugar porter (SP) family. This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083)
Probab=99.25 E-value=1.9e-10 Score=124.56 Aligned_cols=189 Identities=13% Similarity=-0.006 Sum_probs=128.5
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHhhhhHHHhhcccchHHHHHHHHHHHH
Q 007580 68 WIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYL 147 (597)
Q Consensus 68 ~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~lsD~~~GR~~~~~~~~~l~~ 147 (597)
++.++..++..+......+.+..+ .+++.+++|++..++++....+.++..++.+++|+++|| +|||+.+.++.++..
T Consensus 283 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~-~~~~~~~~~~~~~~~ 360 (481)
T TIGR00879 283 RRLFLGVVLQWFQQFTGINAIMYY-SPTIFENAGVSTDHAFLVSIIVGAVNFAFTFVAIFLVDR-FGRRPLLLIGAAGMA 360 (481)
T ss_pred HHHHHHHHHHHHHHHhCCeehHHH-HHHHHHHcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHH-hcchHHHHHHHHHHH
Confidence 334444444444433333333334 455566789998888888888899999999999999999 899999999988777
Q ss_pred HHHHHHHHhhhccccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhhchhhhhhhhhhccCCCCCchhhhhh
Q 007580 148 AGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHL 227 (597)
Q Consensus 148 ~g~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~R 227 (597)
++..++.+...... +. .+ ...+...+....++.+....+..+....+.+|.+|++. |
T Consensus 361 ~~~~~~~~~~~~~~--~~--------------~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~------~ 417 (481)
T TIGR00879 361 ICLFVLGILGASFV--TG--------------SS-KSSGNVAIVFILLFIAFFAMGWGPVPWVIVSEIFPLSL------R 417 (481)
T ss_pred HHHHHHHHHhhccc--CC--------------cc-cchhHHHHHHHHHHHHHHHccccCeehhhhhccCChHH------H
Confidence 77766663211000 00 00 00122222222223333333344666778899999998 9
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHhcC
Q 007580 228 DRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGTP 281 (597)
Q Consensus 228 ~~~~~~~~~~~~lg~~l~p~i~~~i~~~~gw~~~f~i~~~~~~~~~~~~~~~~~ 281 (597)
++..++.+...++|.+++|.+.+++.++.+|++.|++.+++.+++.++.++..+
T Consensus 418 ~~~~~~~~~~~~lg~~i~~~~~~~~~~~~~~~~~f~~~~~~~~~~~i~~~~~~~ 471 (481)
T TIGR00879 418 PKGISIAVAANWLANFIVGFLFPTMLESIGVGGVFIFFGGLNVLGLIFVYFFLP 471 (481)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccceehhHHHHHHHHHHHHheecc
Confidence 999999999999999999999999999889999998887776666655544443
No 152
>PRK10406 alpha-ketoglutarate transporter; Provisional
Probab=99.24 E-value=7.1e-10 Score=119.75 Aligned_cols=172 Identities=10% Similarity=0.021 Sum_probs=109.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHhhhhHHHhhcccchHHHHHHHHHHHHHHHHHHH
Q 007580 75 FGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGIT 154 (597)
Q Consensus 75 ~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~lsD~~~GR~~~~~~~~~l~~~g~~~~~ 154 (597)
....++....+|++..++|.|+.+.+|.+..+++...+...++..++.++.|+++|| +|||+++.++.++..+......
T Consensus 249 ~~~~~~~~~~~~~~~~~lp~~l~~~~g~s~~~~~~~~~i~~~~~~i~~~~~G~l~Dr-~grr~~~~~~~~~~~~~~~~~~ 327 (432)
T PRK10406 249 LGFTAAGSLCFYTFTTYMQKYLVNTAGMHANVASGIMTAALFVFMLIQPLIGALSDK-IGRRTSMLCFGSLAALFTVPIL 327 (432)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCchHHHHHHHHHHHHHHHHHH
Confidence 333344467788899999999999999999888888887777788888999999999 8999988776654433322221
Q ss_pred HhhhccccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhhchhhhhhhhhhccCCCCCchhhhhhhhHHHHH
Q 007580 155 LCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFF 234 (597)
Q Consensus 155 ~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~R~~~~~~~ 234 (597)
..... . .+....+....+..++.+...+....+.+|.||++. |++++++.
T Consensus 328 ~~~~~----~--------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~fp~~~------r~t~~g~~ 377 (432)
T PRK10406 328 SALQN----V--------------------SSPYAAFGLVMCALLIVSFYTSISGILKAEMFPAQV------RALGVGLS 377 (432)
T ss_pred HHHHc----C--------------------CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCc------cchhhhHH
Confidence 11000 0 111221222222223333344556788899999999 99999996
Q ss_pred HHHH-HHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHH
Q 007580 235 YLSV-TVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFF 277 (597)
Q Consensus 235 ~~~~-~lg~~l~p~i~~~i~~~~gw~~~f~i~~~~~~~~~~~~~ 277 (597)
+... .+++..+|.+.+++.....|...++..++..+++.+..+
T Consensus 378 ~~~g~~~~g~~~p~~~~~l~~~g~~~~~~~~~~~~~~i~~~~~~ 421 (432)
T PRK10406 378 YAVANALFGGSAEYVALSLKSIGMETAFFWYVTLMAVVAFLVSL 421 (432)
T ss_pred HHHHHHHHHhHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHH
Confidence 6544 444556888888664432355555555554444444433
No 153
>TIGR01272 gluP glucose/galactose transporter. Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity.
Probab=99.21 E-value=1.1e-09 Score=112.90 Aligned_cols=163 Identities=10% Similarity=0.023 Sum_probs=125.4
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--hCCChHHHHHHHHHHHHHHHHHhhhhHHHhhcccchHHHHHHHHHH
Q 007580 68 WIAALFIFGNEMAERMAYFGLSVNMVTFMFYV--MHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTI 145 (597)
Q Consensus 68 ~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~--~~~s~~~a~~~~~~~~~~~~~~~~~~G~lsD~~~GR~~~~~~~~~l 145 (597)
.+..++..+..|+...+-.++..|++.|+.+. +|+++.+++...+.+..+..++.+++++++|| +|+|+++.++.++
T Consensus 139 ~~~~~l~~~~~f~yvg~e~~~~~w~~~yl~~~~~~g~s~~~a~~~~s~~~~~~~iGr~~~~~l~~r-~g~~~~l~~~~~l 217 (310)
T TIGR01272 139 FTHLVLGALGIFVYVGAEVSAGSFLVNFLSDPHALGLPEDQAAHFTAYTWGGAMVGRFIGSAVMPM-ISQGRYLAFNAFL 217 (310)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCHHHHHHHHHHH
Confidence 33455555666665556678889999999854 79999999999999999999999999999999 8999998888877
Q ss_pred HHHHHHHHHHhhhccccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhhchhhhhhhhhhccCCCCCchhhh
Q 007580 146 YLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKT 225 (597)
Q Consensus 146 ~~~g~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~ 225 (597)
.+++.++.... .+.. ...+..+.|++.+...|...+...+.+|++. +
T Consensus 218 ~~~~~~l~~~~----------------------------~~~~-~~~~~~l~g~~~s~i~P~~~s~a~~~~~~~~-~--- 264 (310)
T TIGR01272 218 AVLLSIGAALT----------------------------HGYV-AMWFVLALGLFNSIMFPTIFSLALNALGRHT-S--- 264 (310)
T ss_pred HHHHHHHHHHc----------------------------CCHH-HHHHHHHHHHHHHHHHHHHHHHHHhhhhhhh-h---
Confidence 77666544432 1111 2235558899999999999999999888653 1
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHhhhccchHHHHHHHHHH
Q 007580 226 HLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIA 268 (597)
Q Consensus 226 ~R~~~~~~~~~~~~lg~~l~p~i~~~i~~~~gw~~~f~i~~~~ 268 (597)
+++ ++. ....+|+++.|.+.|++.|..|.+++|++..++
T Consensus 265 -~as--ai~-~~~~~Gg~i~P~l~G~lad~~g~~~a~~v~~~~ 303 (310)
T TIGR01272 265 -QGS--GIL-CLAIVGGAIVPLLQGSLADCLGIQLAFALPVPC 303 (310)
T ss_pred -hhH--HHH-HHHHhcchHHHHHHHHHHHhccchHHHHHHHHH
Confidence 333 343 456789999999999999999999888755543
No 154
>TIGR00712 glpT glycerol-3-phosphate transporter. This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar.
Probab=99.21 E-value=3.5e-10 Score=122.40 Aligned_cols=179 Identities=15% Similarity=0.083 Sum_probs=123.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHhhhhHHHhhcccchHHHHHHHHHHHHH-
Q 007580 70 AALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLA- 148 (597)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~lsD~~~GR~~~~~~~~~l~~~- 148 (597)
.++...+..++.....+++..++|.|+++..|++..++++....+.++..++.+++|+++|| +||++....+..+..+
T Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr-~~~~~~~~~~~~~~~~~ 330 (438)
T TIGR00712 252 LLWYIAIANVFVYLLRYGVLDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDK-VFKGNRGATGVFFMTLV 330 (438)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhHHHHHHHccCCChhhHHHHHHHHHHHHHHHHHHHHHHHHH-hccCcccHHHHHHHHHH
Confidence 45555556666667778888999999999899999999999999999999999999999999 7644322223222211
Q ss_pred --HHHHHHHhhhccccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhhchhhhhhhhhhccCCCCCchhhhh
Q 007580 149 --GLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTH 226 (597)
Q Consensus 149 --g~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~ 226 (597)
+...+... +. .+.....+..++.|++..+..........|.+|++.
T Consensus 331 ~~~~~~~~~~-------~~-------------------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~------ 378 (438)
T TIGR00712 331 TIAVIVYWMN-------PA-------------------GNPLVDMICMIVIGFLIYGPVMLIGLHALELAPKKA------ 378 (438)
T ss_pred HHHHHHHHhc-------CC-------------------CchHHHHHHHHHHHHHHccHHHHHHHHHHHhcChhh------
Confidence 11111111 00 122233334445555444433333456789999988
Q ss_pred hhhHHHHHHHHHHHHH-HHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHhcC
Q 007580 227 LDRFFNFFYLSVTVGA-IVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGTP 281 (597)
Q Consensus 227 R~~~~~~~~~~~~lg~-~l~p~i~~~i~~~~gw~~~f~i~~~~~~~~~~~~~~~~~ 281 (597)
|+++.++++...++|+ .++|.+.|++.++.||.+.|++.+...+++.+..+...+
T Consensus 379 ~g~~~g~~~~~~~~gg~~~gp~l~G~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 434 (438)
T TIGR00712 379 AGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLIVVMI 434 (438)
T ss_pred eeeehhhhchHHHhhhhhhcchhHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999988888774 689999999999999999998877766666555544433
No 155
>COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism]
Probab=99.20 E-value=1.9e-09 Score=112.04 Aligned_cols=177 Identities=15% Similarity=0.086 Sum_probs=145.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHhhhhHHHhhcccchHHHHHHHHHHHHHH
Q 007580 70 AALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAG 149 (597)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~lsD~~~GR~~~~~~~~~l~~~g 149 (597)
.++..++..++...+.|...+++-+++++..|++....+++...|.++..++.+++|+++|| +.|+++....++..+.
T Consensus 212 ~v~~~l~~t~l~~~g~F~~ftYi~P~L~~v~g~s~~~vs~~Ll~~Gv~~~~Gn~~gGrl~dr--~~~~~l~~~~~l~a~~ 289 (394)
T COG2814 212 GVLLGLLATFLFMTGHFALYTYIRPFLESVAGFSVSAVSLVLLAFGIAGFIGNLLGGRLADR--GPRRALIAALLLLALA 289 (394)
T ss_pred hHHHHHHHHHHHHcchhhhHHhHHHHHHHccCCCHhHHHHHHHHHHHHHHHHHHHHhhhccc--cchhHHHHHHHHHHHH
Confidence 46677777888888889999999999999999999999999999999999999999999998 8888888887777776
Q ss_pred HHHHHHhhhccccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhhchhhhhhhhhhccCCCCCchhhhhhhh
Q 007580 150 LTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDR 229 (597)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~R~~ 229 (597)
...+.+.. .+....++..++.|+...........-.++ .-++. ++.
T Consensus 290 ~l~l~~~~---------------------------~~~~~~~~~~~~wg~a~~~~~~~~~~~~a~-~~p~~------~~~ 335 (394)
T COG2814 290 LLALTFTG---------------------------ASPALALALLFLWGFAFSPALQGLQTRLAR-LAPDA------ADL 335 (394)
T ss_pred HHHHHHhc---------------------------chHHHHHHHHHHHHHHhhhhhhHHHHHhcc-cCCCc------hHH
Confidence 66666542 244555566666777777766666666677 33455 799
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHhcCc
Q 007580 230 FFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGTPL 282 (597)
Q Consensus 230 ~~~~~~~~~~lg~~l~p~i~~~i~~~~gw~~~f~i~~~~~~~~~~~~~~~~~~ 282 (597)
..+++....|+|..+|..++|.+.++.|+....++.++..+++.++.+...+.
T Consensus 336 a~sl~~aa~nlgia~GA~lGG~v~~~~g~~~~~~~~a~l~~~a~~~~~~~~~~ 388 (394)
T COG2814 336 AGSLNVAAFNLGIALGAALGGLVLDALGYAATGWVGAALLLLALLLALLSARK 388 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 99999999999999999999999999999999999998888877776654443
No 156
>TIGR00881 2A0104 phosphoglycerate transporter family protein.
Probab=99.18 E-value=3.6e-10 Score=118.63 Aligned_cols=161 Identities=16% Similarity=0.122 Sum_probs=119.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHhhhhHHHhhcccchHHHHHHHHH--HHH
Q 007580 70 AALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTT--IYL 147 (597)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~lsD~~~GR~~~~~~~~~--l~~ 147 (597)
.++.+.+..++.....+++..+++.|+.+.+|.+..+++...+.+.++..++.++.|+++||..+||+....... ...
T Consensus 217 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~~~ 296 (379)
T TIGR00881 217 VLWYISLGYVFVYVVRTGILDWSPLYLTQEKGFSKEKASWAFTLYELGGLVGTLLAGWLSDKLFNGRRGPLAVFFMALII 296 (379)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHcchhHHHHHHHHHHHcCCcchHHHHHHHHHHH
Confidence 455666666677777778888999999999999999999999999999999999999999983334433222211 111
Q ss_pred HHHHHHHHhhhccccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhhchhhhhhhhhhccCCCCCchhhhhh
Q 007580 148 AGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHL 227 (597)
Q Consensus 148 ~g~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~R 227 (597)
++....... +. .+...+++..++.|+...+..+....+..|.+|++. |
T Consensus 297 ~~~~~~~~~-------~~-------------------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~------~ 344 (379)
T TIGR00881 297 VSLLVYWLN-------PA-------------------ANPLMDLICLFALGFLVYGPQMLIGVIASELAPKKA------A 344 (379)
T ss_pred HHHHHHhcC-------cc-------------------hhHHHHHHHHHHHHHHHhhhhHHHHHHHHHhcCcch------h
Confidence 121111111 00 233445555666777666666777788999999998 9
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhhhccchHHHH
Q 007580 228 DRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAF 262 (597)
Q Consensus 228 ~~~~~~~~~~~~lg~~l~p~i~~~i~~~~gw~~~f 262 (597)
++..++++...++|..++|.+.|++.++.||++.|
T Consensus 345 g~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~f 379 (379)
T TIGR00881 345 GTAAGFVGFFAYLGGILAGLPLGYLADGFGWAGAF 379 (379)
T ss_pred HHHHHHHHHhhhhhhhhhhhhHHHHHHhhcccccC
Confidence 99999999999999999999999999999998764
No 157
>KOG2563 consensus Permease of the major facilitator superfamily [General function prediction only]
Probab=99.17 E-value=2.5e-09 Score=110.77 Aligned_cols=162 Identities=12% Similarity=-0.024 Sum_probs=119.0
Q ss_pred cccCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHhhhhHHHhhcccchHHHHHH
Q 007580 62 LSKTGGWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAI 141 (597)
Q Consensus 62 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~lsD~~~GR~~~~~~ 141 (597)
+.-++||..++...+..+.+.+.. .-......|....++ +...+-|...+|.+.+....+.+-|+.|+ +|-|.++++
T Consensus 38 rVy~rRW~vLl~~slL~~SN~~qW-I~ya~i~n~~~~~Yg-s~~~~~wlsmIym~v~vp~gf~~mw~ldk-~GLR~a~ll 114 (480)
T KOG2563|consen 38 RVYPRRWVVLLAFSLLNFSNGMQW-IQYAPINNYVNSFYG-SSSAADWLSMIYMVVSVPFGFAAMWILDK-FGLRTALLL 114 (480)
T ss_pred ccchhHhHHHHHHHHHHhcCcchh-eeehhHHHHHHHHhc-chHHHHHHHHHHHHHHHHHhhHHHHhhcc-cchHHHHHH
Confidence 455678876666666666654442 222334556777778 66677788899999999999999999999 899999999
Q ss_pred HHHHHHHHHHHHHHhhhccccCCCCCcccccccccCCCCCccchhH--HHHHHHHHHHHHhhhchhhhhhhhhhccCCCC
Q 007580 142 FTTIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQM--LYLYTVLYITGFGAAGIRPCVSSFGADQFDER 219 (597)
Q Consensus 142 ~~~l~~~g~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~--~~l~~~~~l~g~g~g~~~~~~~~~~ad~~~~~ 219 (597)
+..+..+|..+=.++... ... +.+ ...+.+..+.+..+-.+...-+-+.+-+|+++
T Consensus 115 gt~ln~iGa~Ir~iss~p-~v~---------------------~~f~~~l~~~Gq~iaa~Aq~Fim~lPskiA~~WF~~~ 172 (480)
T KOG2563|consen 115 GTVLNGIGAWIRLISSLP-FVP---------------------PLFRRPLTHTGQSIAAAAQPFILGLPSKIAAVWFPPD 172 (480)
T ss_pred HHHHHHHHHHHhhhccCc-ccc---------------------ccchhhhhHHhHHHHHHhhhHhhccccHHHHhhCCcc
Confidence 999999999887776431 111 122 25667777777777777666677788999999
Q ss_pred CchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhh
Q 007580 220 SKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQM 254 (597)
Q Consensus 220 ~~~~~~~R~~~~~~~~~~~~lg~~l~p~i~~~i~~ 254 (597)
+ |..+..+-.++..+|.+++.++...+..
T Consensus 173 q------ra~A~~~~v~~n~LGvavg~llppilV~ 201 (480)
T KOG2563|consen 173 Q------RAIATVLGVMGNPLGVAVGFLLPPILVP 201 (480)
T ss_pred h------hhhhhhHHHhcchHHHHHHhhccceecC
Confidence 9 9999888777777777777666655543
No 158
>COG2270 Permeases of the major facilitator superfamily [General function prediction only]
Probab=99.16 E-value=8.8e-09 Score=106.24 Aligned_cols=57 Identities=21% Similarity=0.235 Sum_probs=52.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhccC
Q 007580 473 CLIGIAEVFCIVGLLEFLYEEAPDAMKSIGSAYAALAGGLGCFAASILNSIIKSVTG 529 (597)
Q Consensus 473 ~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~gl~~~~~~lg~~lg~~l~~~v~~~~g 529 (597)
+++|+..+......=++..+.+|+++.+...|++++....++++||.+++++.+.+|
T Consensus 349 ll~g~s~G~~qA~SRSy~~~lvp~~k~~~fFglyaltgra~S~~gp~lv~v~t~iTg 405 (438)
T COG2270 349 LLVGTSLGGAQASSRSYLARLVPKGKEGRFFGLYALTGRAASFLGPFLVAVITQITG 405 (438)
T ss_pred HHHHHhcchHHHHHHHHHHHhCCCccccceeehhhhhhhHHHHHHHHHHHHHHHHhc
Confidence 456777777788888999999999999999999999999999999999999999887
No 159
>PRK12307 putative sialic acid transporter; Provisional
Probab=99.16 E-value=2e-09 Score=115.74 Aligned_cols=147 Identities=15% Similarity=0.042 Sum_probs=108.2
Q ss_pred HHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHhhhhHHHhhcccchHHHHHHHHHHHHHHHHHHHHhhhccccC
Q 007580 84 AYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFM 163 (597)
Q Consensus 84 ~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~lsD~~~GR~~~~~~~~~l~~~g~~~~~~~~~~~~~~ 163 (597)
..+.+..+++.|+.+ .|.+..+.+.....+.++..++.+++|+++|| +|||+.+..+.++..++..+......
T Consensus 246 ~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~g~~~~g~l~dr-~~~~~~~~~~~~~~~~~~~~~~~~~~----- 318 (426)
T PRK12307 246 ANWPIFGLLPTYLAG-EGFDTGVVSNLMTAAAFGTVLGNIVWGLCADR-IGLKKTFSIGLLMSFLFIFPLFRIPQ----- 318 (426)
T ss_pred HHHHHHHHHHHHHHH-cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hccHHHHHHHHHHHHHHHHHHHHHcc-----
Confidence 334566788888875 69998888888888899999999999999999 89999998888766655444432210
Q ss_pred CCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhhchhhhhhhhhhccCCCCCchhhhhhhhHHHHHHHHHHHHHH
Q 007580 164 PNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAI 243 (597)
Q Consensus 164 ~~~~~c~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~R~~~~~~~~~~~~lg~~ 243 (597)
.+...+.+..+..+++..+..+..+.++.|.+|++. |++.+++.+....+|..
T Consensus 319 ---------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~------~g~~~g~~~~~~~~~~~ 371 (426)
T PRK12307 319 ---------------------DNYLLLGACLFGLMATNVGVGGLVPKFLYDYFPLEV------RGLGTGLIYNLAATSGT 371 (426)
T ss_pred ---------------------ccHHHHHHHHHHHHHhcccHhHHHHHHHHHhCcHHH------HhhhhhHHHHHHhHHHH
Confidence 111222222222233333445567788899999998 99999999999999999
Q ss_pred HHHHHHHHhhhccchHHHHHH
Q 007580 244 VAFTLVVYIQMEHGWGSAFGA 264 (597)
Q Consensus 244 l~p~i~~~i~~~~gw~~~f~i 264 (597)
++|.+.|++.+..|+.+..++
T Consensus 372 ~gp~~~g~l~~~~g~~~~~~~ 392 (426)
T PRK12307 372 FNSMAATWLGITMGLGAALTF 392 (426)
T ss_pred HHHHHHHHHHHcccHHHHHHH
Confidence 999999999998887654443
No 160
>TIGR02332 HpaX 4-hydroxyphenylacetate permease. This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially.
Probab=99.14 E-value=1e-09 Score=117.70 Aligned_cols=164 Identities=9% Similarity=-0.078 Sum_probs=116.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hhCCChHHHHHHHHHHHHHHHHHhhhhHHHhhcccchHHHH-HHHHHHHH
Q 007580 70 AALFIFGNEMAERMAYFGLSVNMVTFMFY-VMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTI-AIFTTIYL 147 (597)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~l~~yl~~-~~~~s~~~a~~~~~~~~~~~~~~~~~~G~lsD~~~GR~~~~-~~~~~l~~ 147 (597)
.++...+..++....++++..++|.|+.+ ..+.+..+++.......++..++.+++|+++|| +|||+.. .+..++..
T Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~~~~s~~~~~~~~~~~~l~~~~g~l~~g~l~dr-~~~r~~~~~~~~~~~~ 321 (412)
T TIGR02332 243 AIMLYTLAYFCLTNTLSAINIWTPQILQSFNQGSSNIMIGLLAAIPQFCTIFGMIWWSRHSDR-LKERKHHTALPYLFAA 321 (412)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcHHHhHHHhhHHHHHHHHHHHHHHHHhcc-cCccHHHHHHHHHHHH
Confidence 45667777778888889999999999977 346788888888899999999999999999999 7877643 33333333
Q ss_pred HHHHHHHHhhhccccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhhchhhhhhhhhhccCCCCCchhhhhh
Q 007580 148 AGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHL 227 (597)
Q Consensus 148 ~g~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~R 227 (597)
++..+.... .+....+++..+.++|.....+.......|.+|+++ |
T Consensus 322 ~~~~~~~~~----------------------------~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~------~ 367 (412)
T TIGR02332 322 AGWLLASAT----------------------------DHNLIQLLGIIMASMGSFSAMAIFWTTPDQSISLQA------R 367 (412)
T ss_pred HHHHHHHhc----------------------------CCHHHHHHHHHHHHHHhhhhhhHHHhhcccccchHH------H
Confidence 332211111 011112222223334443334444455567888888 9
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhhhccc-hHHHHHHHHHH
Q 007580 228 DRFFNFFYLSVTVGAIVAFTLVVYIQMEHG-WGSAFGALAIA 268 (597)
Q Consensus 228 ~~~~~~~~~~~~lg~~l~p~i~~~i~~~~g-w~~~f~i~~~~ 268 (597)
+.++++.+...++|..++|.+.+.+.+..| |+++|++.+++
T Consensus 368 ~~a~g~~~~~~~~g~~~~p~~~g~i~~~~g~~~~~~~~~~~~ 409 (412)
T TIGR02332 368 AIAIAVINATGNIGSALSPFLIGILKDATGSFNSGLWFVAAL 409 (412)
T ss_pred HHHHHHHHHhhhhhhhhhhhhcccccccCCCCchhHHHHHHH
Confidence 999999999999999999999999999875 99998866553
No 161
>PRK15402 multidrug efflux system translocase MdfA; Provisional
Probab=99.14 E-value=7.2e-09 Score=110.83 Aligned_cols=170 Identities=11% Similarity=-0.101 Sum_probs=125.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHhhhhHHHhhcccchHHHHHHHHHHHHHHHH
Q 007580 72 LFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLT 151 (597)
Q Consensus 72 ~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~lsD~~~GR~~~~~~~~~l~~~g~~ 151 (597)
+...+..++.....+......+.|+.+++|+++.+.+.......++..++.++.|+++|| +|||+.+.++.++..++..
T Consensus 218 ~~~~~~~~~~~~~~~~~~~~~p~~~~~~~g~~~~~~g~~~~~~~~~~~~g~~~~g~l~~r-~~~~~~~~~~~~~~~~g~~ 296 (406)
T PRK15402 218 VAGALALGLVSLPLLAWIALSPVILISGEQLSSYEYGLLQVPVFGALIAGNLTLARLTSR-RPLRSLIRMGLWPMVAGLL 296 (406)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCHHHHHHHHHHHHHHHHH
Confidence 333344444445545555667888888899999988887777777888999999999999 8999999998888777777
Q ss_pred HHHHhhhccccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhhchhhhhhhhhhccCCCCCchhhhhhhhHH
Q 007580 152 GITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFF 231 (597)
Q Consensus 152 ~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~R~~~~ 231 (597)
+..+..... + .+...++++.++.|+|.+...+......... ++++ |++..
T Consensus 297 ~~~~~~~~~---~--------------------~~~~~~~~~~~~~g~g~~~~~~~~~~~~~~~-~~~~------~g~~~ 346 (406)
T PRK15402 297 LAALATVIS---S--------------------HAYLWLTAGLSLYAFGIGLANAGLYRLTLFS-SDVS------KGTVS 346 (406)
T ss_pred HHHHHHHcc---c--------------------ccHHHHHHHHHHHHHHHHHHhhhHHHHHhhh-cccc------ccHHH
Confidence 776542100 0 2445567788889999988777666655443 3356 89999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHH
Q 007580 232 NFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGIS 272 (597)
Q Consensus 232 ~~~~~~~~lg~~l~p~i~~~i~~~~gw~~~f~i~~~~~~~~ 272 (597)
+.+++...+|..+|+.+.+++.+..++....+..++..++.
T Consensus 347 ~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~ 387 (406)
T PRK15402 347 AAMGMLSMLIFTVGIELSKHAYLGGGNGLFNLFNLANGLLW 387 (406)
T ss_pred HHHHHHHHHHHHHHHHHHHhcccCCchHHHHHHHHHHHHHH
Confidence 99999999999999999999988878776555544444333
No 162
>TIGR00900 2A0121 H+ Antiporter protein.
Probab=99.13 E-value=1.8e-09 Score=112.70 Aligned_cols=153 Identities=9% Similarity=-0.002 Sum_probs=124.2
Q ss_pred HHHHHHHHHHHHHHHHHHH-HHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHhhhhHHHhhcccchHHHHHHHHHHHHHH
Q 007580 71 ALFIFGNEMAERMAYFGLS-VNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAG 149 (597)
Q Consensus 71 ~~~~~~~~~~~~~~~~~~~-~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~lsD~~~GR~~~~~~~~~l~~~g 149 (597)
++...+..++....+++.. ...+.|.++.+|.+..+.+.....+.++..++.++.|+++|| +|||+.+..+.++..++
T Consensus 212 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~~~~~~~~~ 290 (365)
T TIGR00900 212 LRTLLLLALLFNLVFAPAIVALFPYVQSKYLGRGSTHYGWVLAAFGLGALLGALLLGLLGRY-FKRMALMTGAIFVIGLA 290 (365)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHHHHH-hchhHHHHHHHHHHHHH
Confidence 3444444555555555555 666777777799999999999999999999999999999999 89999988887666666
Q ss_pred HHHHHHhhhccccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhhchhhhhhhhhhccCCCCCchhhhhhhh
Q 007580 150 LTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDR 229 (597)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~R~~ 229 (597)
..+..... .+...+++..++.|++.+...+...+++.|.+|+++ |++
T Consensus 291 ~~~~~~~~---------------------------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~------~g~ 337 (365)
T TIGR00900 291 ILVVGLTP---------------------------PNFPLFLVLWFAIGVGYGPINVPQGTLLQRRVPAEL------LGR 337 (365)
T ss_pred HHHHHhhc---------------------------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHH------HHH
Confidence 65555431 125667778889999999999999999999999988 999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhccc
Q 007580 230 FFNFFYLSVTVGAIVAFTLVVYIQMEHG 257 (597)
Q Consensus 230 ~~~~~~~~~~lg~~l~p~i~~~i~~~~g 257 (597)
.+++++...++|..++|.++|++.++.|
T Consensus 338 ~~~~~~~~~~~~~~~g~~~~g~l~~~~g 365 (365)
T TIGR00900 338 VFGAQFSLSHAAWPLGLILAGPLADHLG 365 (365)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 9999999999999999999999988654
No 163
>PRK11128 putative 3-phenylpropionic acid transporter; Provisional
Probab=99.13 E-value=5.5e-09 Score=110.84 Aligned_cols=165 Identities=7% Similarity=-0.105 Sum_probs=126.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHhhhhHHHhhcccchHHHHHHHHHHHHHH
Q 007580 70 AALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAG 149 (597)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~lsD~~~GR~~~~~~~~~l~~~g 149 (597)
.++..++..++....+......++.|+. +.|.+..+.+...+...++..+..++.|++.|| +|+|+.+.++.++..++
T Consensus 206 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~-~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r-~~~~~~l~~~~~~~~~~ 283 (382)
T PRK11128 206 TVWRFLLCVSLLQGSHAAYYGFSAIYWQ-AAGYSASTIGYLWSLGVVAEVLIFAFSNRLFRR-WSARDLLLLSAICGVVR 283 (382)
T ss_pred hHHHHHHHHHHHHHHhHhHHHHHHHHHH-HCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHH-CCHHHHHHHHHHHHHHH
Confidence 3444445455555665666777888885 589999889988888888888999999999999 89999999988887777
Q ss_pred HHHHHHhhhccccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhhchhhhhhhhhhccCCCCCchhhhhhhh
Q 007580 150 LTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDR 229 (597)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~R~~ 229 (597)
..++..+ ++...+++..++.|++.+...+....+..+. ++++ +++
T Consensus 284 ~~~~~~~----------------------------~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~-~~~~------~~~ 328 (382)
T PRK11128 284 WGLMGST----------------------------TALPWLIVIQILHCGTFTVCHLAAMRYIAAR-PGSE------VIR 328 (382)
T ss_pred HHHHHhh----------------------------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-CHhh------hHH
Confidence 7666544 4566778888999999998888888887776 5555 677
Q ss_pred HHHHHH-HHHHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHH
Q 007580 230 FFNFFY-LSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGIS 272 (597)
Q Consensus 230 ~~~~~~-~~~~lg~~l~p~i~~~i~~~~gw~~~f~i~~~~~~~~ 272 (597)
..++++ ....+|..+||.++|++.|..|+. .|++.+++.+++
T Consensus 329 ~~~~~~~~~~~~g~~ig~~i~G~l~~~~g~~-~~~~~~~~~~~~ 371 (382)
T PRK11128 329 LQALYSALAMGGSIAIMTVLSGFLYQHLGAG-VFWVMALVALPA 371 (382)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccHH-HHHHHHHHHHHH
Confidence 788765 556788899999999999998874 565555544443
No 164
>PRK10504 putative transporter; Provisional
Probab=99.12 E-value=4.5e-09 Score=114.69 Aligned_cols=156 Identities=10% Similarity=-0.033 Sum_probs=122.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHhhhhHHHhhcccchHHHHHHHHHHHHHHH
Q 007580 71 ALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGL 150 (597)
Q Consensus 71 ~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~lsD~~~GR~~~~~~~~~l~~~g~ 150 (597)
+...++..++..+++.......+.|++..+|.++.++++....+.++..++.++.|+++|| +|||+++.++.++..++.
T Consensus 263 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r-~g~~~~~~~~~~~~~~~~ 341 (471)
T PRK10504 263 FSLGLAGSFAGRIGSGMLPFMTPVFLQIGLGFSPFHAGLMMIPMVLGSMGMKRIVVQVVNR-FGYRRVLVATTLGLALVS 341 (471)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCchHHHHHHHHHHHHHH
Confidence 4445555566666655555566778877899999999988888888888888999999999 899999998888777766
Q ss_pred HHHHHhhhccccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhhchhhhhhhhhhccCCCCCchhhhhhhhH
Q 007580 151 TGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRF 230 (597)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~R~~~ 230 (597)
.++..... . .+...+.+..++.|++.+...+....+..+.+|+++ |+..
T Consensus 342 ~~~~~~~~------~-------------------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~------~g~~ 390 (471)
T PRK10504 342 LLFMLVAL------L-------------------GWYYLLPFVLFLQGMVNSTRFSSMNTLTLKDLPDNL------ASSG 390 (471)
T ss_pred HHHHhccc------c-------------------ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHh------ccch
Confidence 65554311 0 223334455677888888888889999999999988 9999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhccch
Q 007580 231 FNFFYLSVTVGAIVAFTLVVYIQMEHGW 258 (597)
Q Consensus 231 ~~~~~~~~~lg~~l~p~i~~~i~~~~gw 258 (597)
++++++...+|..+|+.++|.+.+..|+
T Consensus 391 ~~~~~~~~~~g~~ig~~i~g~ll~~~g~ 418 (471)
T PRK10504 391 NSLLSMIMQLSMSIGVTIAGLLLGLFGQ 418 (471)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 9999999999999999999988776555
No 165
>COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism]
Probab=99.12 E-value=1.9e-09 Score=111.10 Aligned_cols=181 Identities=13% Similarity=-0.004 Sum_probs=140.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHhhhhHHHhhcccchHHHHHHHHHHHHHH
Q 007580 70 AALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAG 149 (597)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~lsD~~~GR~~~~~~~~~l~~~g 149 (597)
..|.+++..+..--++-++..+++.|++++++.++.+++.....+.+...+..++||+|||| +|.+|+..+...+.+++
T Consensus 219 ~~W~lsllY~~tFG~Fvgfs~~l~~~~~~~fg~~~~~Ag~~a~~f~~~g~l~Rp~GG~LsDR-~Gg~rv~~~~f~~~~~~ 297 (417)
T COG2223 219 DTWLLSLLYFATFGGFVGFSAYLPMYLVTQFGLSPVTAGLIAFLFPLIGALARPLGGWLSDR-IGGRRVTLAVFVGMALA 297 (417)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHHHhccchhhhh-ccchhHHHHHHHHHHHH
Confidence 57778888888888888999999999999999999999999999999999999999999999 79999888888777777
Q ss_pred HHHHHHhhhccccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhhchhhhhhhhhhccCCCCCchhhhhhhh
Q 007580 150 LTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDR 229 (597)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~R~~ 229 (597)
..+..+..... ..+.+...++...+..++..|.-...+..++...||++ -+.
T Consensus 298 ~~~l~~~~~~~---------------------~~~~~~~~~~~~~l~l~~~~G~GnGsvfk~Ip~if~~~-------~G~ 349 (417)
T COG2223 298 AALLSLFLTGF---------------------GHGGSFVVFVAVFLALFVFAGLGNGSVFKMIPVIFPKE-------TGA 349 (417)
T ss_pred HHHHHcccccc---------------------ccCcchHHHHHHHHHHHHHhccCcchheeechHHHHhh-------hhH
Confidence 77666542100 00123344444444455555555556667777777764 588
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhccc-hHHHHHHHHHHHHHHHHHHHHh
Q 007580 230 FFNFFYLSVTVGAIVAFTLVVYIQMEHG-WGSAFGALAIAMGISNMLFFIG 279 (597)
Q Consensus 230 ~~~~~~~~~~lg~~l~p~i~~~i~~~~g-w~~~f~i~~~~~~~~~~~~~~~ 279 (597)
..++.....++|+..-|...+...+..| +...|++.....+++.++.+..
T Consensus 350 v~G~vga~G~lGGf~lp~~~g~~~~~tg~~~~~f~~~~~~~~~a~v~~~~~ 400 (417)
T COG2223 350 VTGIVGAIGGLGGFFLPLAFGVSLDLTGSYTGAFMLLLAFYLVALVLTWAL 400 (417)
T ss_pred HHHHHHHhccccccchhHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHH
Confidence 8889999999999999999999988887 9999998888777776655443
No 166
>PLN00028 nitrate transmembrane transporter; Provisional
Probab=99.11 E-value=2.4e-09 Score=117.13 Aligned_cols=174 Identities=11% Similarity=0.039 Sum_probs=112.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHhhhhHHHhhcccchHH-----HHHHHHHHH
Q 007580 72 LFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYW-----TIAIFTTIY 146 (597)
Q Consensus 72 ~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~lsD~~~GR~~-----~~~~~~~l~ 146 (597)
+.+.+..++.....+.+..+++.|+.+++|++..+++...+.+.++..++.+++|+++|| +|||+ .........
T Consensus 255 ~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~a~~~~~~~~~~~~ig~~~~G~lsDr-~~~r~~~~~r~~~~~~~~~ 333 (476)
T PLN00028 255 WILALTYGYSFGVELTMDNIIAEYFYDRFGLSLETAGAIAASFGLMNLFARPAGGYLSDV-AARRFGMRGRLWALWIVQT 333 (476)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhHHHHHH-HHHhcCcchhHHHHHHHHH
Confidence 334444444444556667788999999999999999999999999999999999999999 78762 222111111
Q ss_pred HHHHHHHHHhhhccccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhhchhhhhhhhhhccCCCCCchhhhh
Q 007580 147 LAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTH 226 (597)
Q Consensus 147 ~~g~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~ 226 (597)
..+...+.+... .+....++..++.+++.+...+...++..+..| +.
T Consensus 334 l~~i~~~~~~~~--------------------------~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~-~~------ 380 (476)
T PLN00028 334 LGGVFCIWLGRA--------------------------NSLGAAIVVMILFSIFVQAACGATFGIVPFVSR-RS------ 380 (476)
T ss_pred HHHHHHHHhccc--------------------------chHHHHHHHHHHHHHHHHHhhhhhcccCcccCh-hh------
Confidence 112211221100 233344444555666665555556666666544 45
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHhc
Q 007580 227 LDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGT 280 (597)
Q Consensus 227 R~~~~~~~~~~~~lg~~l~p~i~~~i~~~~gw~~~f~i~~~~~~~~~~~~~~~~ 280 (597)
|+...++.+...++|+.++|.+.+ ..+..+|+.+|++.+++.+++.++.++.+
T Consensus 381 ~g~~~g~~~~~g~lg~~i~~~l~~-~~~~~~y~~~f~~~~~~~~i~~~~~~~~~ 433 (476)
T PLN00028 381 LGVISGLTGAGGNVGAVLTQLLFF-TGSSYSTETGISLMGVMIIACTLPVAFIH 433 (476)
T ss_pred chhhhhhhhccccHHHHHHHHHHH-hcCCccHhhHHHHHHHHHHHHHHHHHhee
Confidence 889999987777777777776644 22345799999998877777666655543
No 167
>TIGR01272 gluP glucose/galactose transporter. Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity.
Probab=99.11 E-value=2.3e-08 Score=102.99 Aligned_cols=84 Identities=10% Similarity=0.027 Sum_probs=72.1
Q ss_pred hhHHHHHHHHHHHHHhhhchhhhhhhhhhccCCCCCchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhc---------
Q 007580 185 WQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQME--------- 255 (597)
Q Consensus 185 ~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~R~~~~~~~~~~~~lg~~l~p~i~~~i~~~--------- 255 (597)
.++..++++.++.|.|.+...+..++++++..++++ +.+.+++......+|..++|.+++.+...
T Consensus 8 ~~~~~~l~~~f~~g~G~~~lq~~~n~~v~~~~~~~~------~~~~l~~~~~~~~~G~~~gP~i~~~~i~~~~~~~~~~~ 81 (310)
T TIGR01272 8 RYYVLFLGALFVLASGLTILQVAANPYVSILGPIET------AASRLALTQAFNKLGTTVAPLFGGSLILSGAGDLSMQV 81 (310)
T ss_pred hHHHHHHHHHHHHHhhHHHHHhhHHHHHHHHCCcch------HHHHHHHHHHHhhhHHHHHHHHHHHHHhcCCcchhhhh
Confidence 467899999999999999999999999999999998 99999999999999999999999987632
Q ss_pred -------cchHHHHHHHHHHHHHHHH
Q 007580 256 -------HGWGSAFGALAIAMGISNM 274 (597)
Q Consensus 256 -------~gw~~~f~i~~~~~~~~~~ 274 (597)
..|+++|++.+.+..+..+
T Consensus 82 ~~~~~~~~~~~~~yl~ia~~~~~~~i 107 (310)
T TIGR01272 82 ATANAEAAKVHTPYLLLAGALAVLAI 107 (310)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 4699998866655444333
No 168
>PRK10091 MFS transport protein AraJ; Provisional
Probab=99.10 E-value=8.1e-09 Score=109.57 Aligned_cols=168 Identities=10% Similarity=-0.019 Sum_probs=115.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHhhhhHHHhhcccchHHHHHHHHHHHHHHHHH
Q 007580 73 FIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTG 152 (597)
Q Consensus 73 ~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~lsD~~~GR~~~~~~~~~l~~~g~~~ 152 (597)
......++.....+....++++|+.+.+|.++.+.+...+.+.++..++.++.|+++|| +|||+.+.++..+..++..+
T Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~~r-~~~~~~~~~~~~~~~i~~~~ 281 (382)
T PRK10091 203 LIFAATMFGNAGVFAWFSYIKPYMMFISGFSETSMTFIMMLVGLGMVLGNLLSGRLSGR-YSPLRIAAVTDFIIVLALLM 281 (382)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHhHHHheeccc-cCchhHHHHHHHHHHHHHHH
Confidence 33333344444445555677888888899999999999999999999999999999999 89999998888877777655
Q ss_pred HHHhhhccccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhhchhhhhhh-hhhccCCCCCchhhhhhhhHH
Q 007580 153 ITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSS-FGADQFDERSKDYKTHLDRFF 231 (597)
Q Consensus 153 ~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~-~~ad~~~~~~~~~~~~R~~~~ 231 (597)
..... .+....++..++.++|..+..+.... ...+..+++. ++..
T Consensus 282 ~~~~~---------------------------~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~------~~~~- 327 (382)
T PRK10091 282 LFFFG---------------------------GMKTASLIFAFICCAGLFALSAPLQILLLQNAKGGEL------LGAA- 327 (382)
T ss_pred HHHHH---------------------------hhHHHHHHHHHHHHHHHHhhhHHHHHHHHHhCCcchH------HHHH-
Confidence 54321 12233444455556665544444443 3334334333 4433
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhc-cchHHHHHHHHHHHHHHHHHH
Q 007580 232 NFFYLSVTVGAIVAFTLVVYIQME-HGWGSAFGALAIAMGISNMLF 276 (597)
Q Consensus 232 ~~~~~~~~lg~~l~p~i~~~i~~~-~gw~~~f~i~~~~~~~~~~~~ 276 (597)
..+....+|..+||.++|++.+. .+|++.+.+.+...++.....
T Consensus 328 -~~~~~~~~g~~~Gp~~~G~l~~~~~~~~~~~~~~~~~~~~~~~~~ 372 (382)
T PRK10091 328 -GGQIAFNLGSAIGAYCGGMMLTLGLAYNYVALPAALLSFAAMSSL 372 (382)
T ss_pred -HHHHHHHHHHHHHHHHhHHHHHcccCcchHHHHHHHHHHHHHHHH
Confidence 23556789999999999999885 689999988776655544433
No 169
>KOG4686 consensus Predicted sugar transporter [Carbohydrate transport and metabolism]
Probab=99.10 E-value=3e-09 Score=103.23 Aligned_cols=174 Identities=17% Similarity=0.100 Sum_probs=134.4
Q ss_pred ccccCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHhhhhHHHhhcccchHHHHH
Q 007580 61 DLSKTGGWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIA 140 (597)
Q Consensus 61 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~lsD~~~GR~~~~~ 140 (597)
....+.....+|.+..+.++...+.+-+...-+.+.++.+|+|+..++.+.+...+.+++.+++.|.++|+ +||+...+
T Consensus 256 Ltdv~~f~ppfw~~~iicv~yyva~fPFi~lg~~fF~~rfGlS~~~a~~i~s~vy~Isav~spvfg~i~Dk-~G~n~~wv 334 (459)
T KOG4686|consen 256 LTDVNTFYPPFWVLVIICVLYYVAWFPFITLGPMFFQKRFGLSAVSAGNILSTVYGISAVLSPVFGAISDK-YGFNLWWV 334 (459)
T ss_pred cccccccCccHHHHHHHHHHHHHHHHHHhhhhHHHHHHhhCCChhhccchhhhhhhhhhhhhhhHHHhHhh-hcceehhH
Confidence 33333444467888888888777777777777889999999999999999999999999999999999999 79998777
Q ss_pred HHHHH-HHHHHHHHHHhhhccccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhhchhhhhhhhhhccCCCC
Q 007580 141 IFTTI-YLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDER 219 (597)
Q Consensus 141 ~~~~l-~~~g~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~~~~~ 219 (597)
.+..+ +.++..++.++. ..-+++..+.|+............++-..|++
T Consensus 335 ~~a~~~tl~~H~~l~Ft~------------------------------lsPy~~m~~lGLsysllAcslWP~va~~vpE~ 384 (459)
T KOG4686|consen 335 ASACILTLLGHSGLFFTF------------------------------LSPYTSMTFLGLSYSLLACSLWPCVASLVPEE 384 (459)
T ss_pred HHHHHHHHHHhhhHHhhh------------------------------ccHHHHHHHHhhhHHHHHHHHhhhhhhhCCHH
Confidence 66554 444555555542 22355667778887776666778888888999
Q ss_pred CchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhccc---hHHHHHHHHHHHHH
Q 007580 220 SKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHG---WGSAFGALAIAMGI 271 (597)
Q Consensus 220 ~~~~~~~R~~~~~~~~~~~~lg~~l~p~i~~~i~~~~g---w~~~f~i~~~~~~~ 271 (597)
+ .|+++++.+...|+|-.+.|+++|.+.++-| |--.|++....+++
T Consensus 385 q------LGTaygf~qsIqNLgla~i~Iiag~i~d~~g~y~~le~ffl~~~~~aL 433 (459)
T KOG4686|consen 385 Q------LGTAYGFIQSIQNLGLAFIPIIAGFIADGDGSYDNLEAFFLIIGLMAL 433 (459)
T ss_pred H------hcchHHHHHHHHhhhhhHHhhhhheeecCCCchhhHHHHHHHHHHHHH
Confidence 8 9999999999999999999999999998754 44456555444433
No 170
>TIGR00882 2A0105 oligosaccharide:H+ symporter.
Probab=99.09 E-value=4.4e-09 Score=112.14 Aligned_cols=167 Identities=12% Similarity=0.080 Sum_probs=127.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhh---CCChHHHHHHHHHHHHHHHHHhhhhHHHhhcccchHHHHHHHHHHHHHHHH
Q 007580 75 FGNEMAERMAYFGLSVNMVTFMFYVM---HKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLT 151 (597)
Q Consensus 75 ~~~~~~~~~~~~~~~~~l~~yl~~~~---~~s~~~a~~~~~~~~~~~~~~~~~~G~lsD~~~GR~~~~~~~~~l~~~g~~ 151 (597)
++..++....+.....+.+.|+.+.+ +.+....+...+...+...++.++.|++.|| +|||+.+.++.++..++..
T Consensus 221 ~l~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~g~~~~~~~i~~~~~~~~~g~l~~r-~g~~~~l~~~~~l~~l~~~ 299 (396)
T TIGR00882 221 VLYVVGVACVYDVFDQQFANFFTSFFATPQQGTRVFGYVTTMGELLNALIMFCAPLIINR-IGAKNALLIAGTIMSVRII 299 (396)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHH-hccchhHHHHHHHHHHHHH
Confidence 33344444444455556788887766 4455667777887788888889999999999 8999999998888887776
Q ss_pred HHHHhhhccccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhhchhhhhhhhhhccCCCCCchhhhhhhhHH
Q 007580 152 GITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFF 231 (597)
Q Consensus 152 ~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~R~~~~ 231 (597)
+...+ .+...+++.+.+.|++..........+..+.++++. +++..
T Consensus 300 ~~~~~----------------------------~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~------~at~~ 345 (396)
T TIGR00882 300 GSSFA----------------------------TTALEVVILKMLHAFEVPFLLVGCFKYITSQFDVRL------SATIY 345 (396)
T ss_pred HHHhc----------------------------CChHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcce------EEEee
Confidence 65543 345566777888888877766666677778888777 77766
Q ss_pred HH-HHHHHHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHH
Q 007580 232 NF-FYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLF 276 (597)
Q Consensus 232 ~~-~~~~~~lg~~l~p~i~~~i~~~~gw~~~f~i~~~~~~~~~~~~ 276 (597)
+. ++....+|..++|.++|++.+..||+..|.+.+++.++..++.
T Consensus 346 ~~~~~~~~~lg~~~~~~l~G~l~~~~G~~~~f~~~~~~~~i~~~~~ 391 (396)
T TIGR00882 346 LIGFQFAKQLAMIFLSTLAGNMYDSIGFQGAYLVLGCIVLLFTLIS 391 (396)
T ss_pred hHHHHHHHHHHHHHHHHhHHHHHHhcccHHHHHHHHHHHHHHHHHH
Confidence 66 6778899999999999999999999999998887766655443
No 171
>TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family. RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes.
Probab=99.09 E-value=8.1e-09 Score=109.84 Aligned_cols=172 Identities=6% Similarity=-0.102 Sum_probs=120.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHH-HHHHHHhhhhHHHhhcccchHHHHHHHHHHHHHHH
Q 007580 72 LFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFL-GISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGL 150 (597)
Q Consensus 72 ~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~-~~~~~~~~~~G~lsD~~~GR~~~~~~~~~l~~~g~ 150 (597)
+..+...++...+......+.++|+.+ .|+++++.++...... ....++.+++|++.|| +|+|+++.++.++..+..
T Consensus 211 ~~~~~~~~l~~~~~~~~~~~~~~~l~~-~G~s~~~ig~~~~~~~~~~~~~g~~~~g~l~~r-~g~~~~l~~~~~~~~~~~ 288 (390)
T TIGR02718 211 WSLLALALLSAMTAVSGFGLSKLYLVD-AGWPLEWIGRLGMAGGAVTVLLGCGGGAWLVRR-AGLWRTFILGVGLAGSLA 288 (390)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHh-cCCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHH-hhHHHHHHHHHHHHHHHH
Confidence 334444455555556666777888865 7999999998888765 4666778999999999 899999988776653332
Q ss_pred HHHHHhhhccccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhhchhhhhhhhhhccCCC-CCchhhhhhhh
Q 007580 151 TGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDE-RSKDYKTHLDR 229 (597)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~~~~-~~~~~~~~R~~ 229 (597)
........ .... .+...++....+.+++.+...+...+...+..++ +. +++
T Consensus 289 ~~~~~~~~-~~~~---------------------~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~------~g~ 340 (390)
T TIGR02718 289 LLWFAQAA-FWLA---------------------PGIAVAWSCSAFGSLITGITSVAIYTAFMRFAGDGDQ------AGT 340 (390)
T ss_pred HHHHHHHH-cccC---------------------CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcccc------hHH
Confidence 22221110 0000 1223334444555666777777777777777765 66 899
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHH
Q 007580 230 FFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISN 273 (597)
Q Consensus 230 ~~~~~~~~~~lg~~l~p~i~~~i~~~~gw~~~f~i~~~~~~~~~ 273 (597)
.+++++...++|..++|.++|++.+..||+..|.+.+++.+++.
T Consensus 341 ~~~~~~~~~~lg~~~g~~~~G~l~~~~G~~~~f~~~~~~~l~a~ 384 (390)
T TIGR02718 341 DVTAVQSTRDLGELIASSIAGYLTDRFGYAGGFLSGTVLAVLAI 384 (390)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999887766555543
No 172
>TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter.
Probab=99.09 E-value=6.6e-09 Score=113.28 Aligned_cols=179 Identities=17% Similarity=0.077 Sum_probs=123.8
Q ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHhhhhHHHhhcccchHHHH------
Q 007580 66 GGWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTI------ 139 (597)
Q Consensus 66 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~lsD~~~GR~~~~------ 139 (597)
-+++.++.+.+..++....++.+..++|.|+.+.+|.+..++++..+...++..++.+++|+++|| +++|+..
T Consensus 258 ~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~l~~~~g~s~~~~g~~~~~~~~~~~i~~~~~g~l~d~-~~~~~~~~~~~~~ 336 (465)
T TIGR00894 258 PKSLPVWAIWFAIFGHFWLYTILPTYLPTFISWVLRVSGKENGLLSSLPYLFAWLCSIFAGYLADF-LKSSKTLSLTAAR 336 (465)
T ss_pred hcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcChHHhHHHHHHHHHHHHHHHHHHHHHHHH-HHHcCCCcHHHHH
Confidence 345577888888899999999999999999999999999999999999999999999999999998 6644211
Q ss_pred --HHHHHHHHHHHHHHHHhhhccccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhhchhhhhhhhhhccCC
Q 007580 140 --AIFTTIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFD 217 (597)
Q Consensus 140 --~~~~~l~~~g~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~~~ 217 (597)
..+......+..++..... . .+....++...+.+.+.++..+.......|..|
T Consensus 337 ~~~~~~~~~~~~~~~~~~~~~-----~--------------------~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 391 (465)
T TIGR00894 337 KIFNGIGGLGPGIFAYALPYL-----S--------------------AAFYLTIIILTLANAVSSGPLAGVLINSLDLAP 391 (465)
T ss_pred HHHHHHHHHHHHHHHHHHHHc-----C--------------------CchHHHHHHHHHHHHHhhhhhhhhhhchhhcCh
Confidence 1111111111111111100 0 122233344445555555555555555556665
Q ss_pred CCCchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhc---cchHHHHHHHHHHHHHHHHHHH
Q 007580 218 ERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQME---HGWGSAFGALAIAMGISNMLFF 277 (597)
Q Consensus 218 ~~~~~~~~~R~~~~~~~~~~~~lg~~l~p~i~~~i~~~---~gw~~~f~i~~~~~~~~~~~~~ 277 (597)
. . ++...++.+...++|+.++|.+.|++.+. .+|...|++.++..+++.++..
T Consensus 392 ~-~------~g~~~g~~~~~~~l~~~i~p~l~g~~~~~~~~~~~~~~f~~~~~~~~i~~i~~~ 447 (465)
T TIGR00894 392 R-F------LGFIKGITGLPGFIGGLIASTLAGNILSQDSKNVWLIVFLIMAFVNILCVIFYL 447 (465)
T ss_pred h-H------HHHHHHHHHHHHHHHHHHHHHhhheeeCCCCchHHHHHHHHHHHHHHHHHHHee
Confidence 4 5 89999999999999999999999998764 3488888888776666655543
No 173
>PF03092 BT1: BT1 family; InterPro: IPR004324 Members of this family are transmembrane proteins. Several are Leishmania putative proteins that are thought to be pteridine transporters [, ]. This family also contains five putative Arabidopsis thaliana proteins of unknown function as well as two predicted prokaryotic proteins (from the cyanobacteria Synechocystis and Synechococcus).
Probab=99.08 E-value=4.9e-08 Score=105.19 Aligned_cols=163 Identities=14% Similarity=0.037 Sum_probs=118.8
Q ss_pred HHHHHHHHhhCCChHHHHHHHHHHHHHHHHHhhhhHHHhhcc--cc--hHHHHHHHHHHHHHHHHHHHHhhhccccCCCC
Q 007580 91 NMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAY--LG--RYWTIAIFTTIYLAGLTGITLCATMKVFMPNQ 166 (597)
Q Consensus 91 ~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~lsD~~--~G--R~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~ 166 (597)
....|+++++|+++++.....+...+... .-++.|.++|.+ +| ||+-++++.++..++...++.....
T Consensus 11 ~~~~~l~~~l~ls~~~~~~~~~~~~lPw~-~Kp~~g~lsD~~pi~G~rr~~Y~~i~~~~~~~~~~~~~~~~~~------- 82 (433)
T PF03092_consen 11 AIYPFLKDDLGLSPAQLQRLSSLASLPWS-IKPLYGLLSDSFPIFGYRRKPYMIIGWLLGAVSALVLALLPAS------- 82 (433)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHhCchH-HhhhHHhhcccccccCCcchHHHHHHHHHHHHHHHHHHhcccc-------
Confidence 34567899999999988877766655554 456889999984 34 5555566766665555555543110
Q ss_pred CcccccccccCCCCCccchhHHHHHHHHHHHHHhhhchhhhhhhhhhccCCCCCchhhhhhhhHHHHHHHHHHHHHHHHH
Q 007580 167 DNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAF 246 (597)
Q Consensus 167 ~~c~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~R~~~~~~~~~~~~lg~~l~p 246 (597)
..+.....+..++..+|......+..++..|....+... |+...++.+....+|..++.
T Consensus 83 -----------------~~s~~~~~~~l~la~~g~a~~DV~aDa~vvE~~~~~p~~----~g~lqS~~~~~~~~G~lv~~ 141 (433)
T PF03092_consen 83 -----------------ESSAAIAVVLLFLASFGYAFADVAADALVVELARREPES----RGDLQSFVWGVRSVGSLVGS 141 (433)
T ss_pred -----------------cchhhhHHHHHHHHHHHHHHHHHhhhHHHHHHhhcCCch----hHHHHHHHHHHHHHHHHHHH
Confidence 023344556667888999999999999999998655422 78889999999999999999
Q ss_pred HHHHHhhhccchHHHHHHHHHHHHHHHHHHHHhcCc
Q 007580 247 TLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGTPL 282 (597)
Q Consensus 247 ~i~~~i~~~~gw~~~f~i~~~~~~~~~~~~~~~~~~ 282 (597)
.++|++.+..++++.|.+.++...+..+..+...++
T Consensus 142 ~l~G~l~~~~~~~~~f~i~~~~~~l~~~~~~~~~~e 177 (433)
T PF03092_consen 142 LLSGPLLDSFGPQGVFLISAALPLLMLIVALFLLEE 177 (433)
T ss_pred HhhhhhhhcCCCeEEehHHHHHHHHHHHHHHHhhhh
Confidence 999999999999999998877766655544444443
No 174
>PRK10077 xylE D-xylose transporter XylE; Provisional
Probab=99.07 E-value=7.3e-09 Score=113.18 Aligned_cols=157 Identities=10% Similarity=-0.044 Sum_probs=112.1
Q ss_pred HHHHHhhCCChHHHHHHHHHHHHHHHHHhhhhHHHhhcccchHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCcccccc
Q 007580 94 TFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDRIS 173 (597)
Q Consensus 94 ~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~lsD~~~GR~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~c~~~~ 173 (597)
+++.+++|.+.....+......+...++.+++|+++|| +|||++++++.++..++.+.++..... +.
T Consensus 295 p~i~~~~g~~~~~~~~~~~~~~~~~~i~~~~~g~l~dr-~g~r~~~i~~~~~~~v~~~~l~~~~~~----~~-------- 361 (479)
T PRK10077 295 PEIFKTLGASTDIALLQTIIVGVINLTFTVLAIMTVDK-FGRKPLQIIGALGMAIGMFSLGTAFYT----QA-------- 361 (479)
T ss_pred HHHHHHcCCCCchHHHHHHHHHHHHHHHHHHHHHHHHH-hcChHHHHHhHHHHHHHHHHHHHHHhc----Cc--------
Confidence 44556788887777777677778888999999999999 899999999999888887777644210 00
Q ss_pred cccCCCCCccchhHHHHHHHHHHHHHhhhc-hhhhhhhhhhccCCCCCchhhhhhhhHHHHHHHHHHHHHHHHHHHHH--
Q 007580 174 QLLGSCEPAKSWQMLYLYTVLYITGFGAAG-IRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVV-- 250 (597)
Q Consensus 174 ~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~-~~~~~~~~~ad~~~~~~~~~~~~R~~~~~~~~~~~~lg~~l~p~i~~-- 250 (597)
.. .....+..+.+++.+. ..|+...+++|.+|++. |++++++.+...++|..+++.+.+
T Consensus 362 -----------~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~------r~~~~g~~~~~~~~g~~~~~~~~p~~ 423 (479)
T PRK10077 362 -----------PG-IVALLSMLFYVAAFAMSWGPVCWVLLSEIFPNAI------RGKALAIAVAAQWIANYFVSWTFPMM 423 (479)
T ss_pred -----------cc-HHHHHHHHHHHHHHhccccchhHHHhHhhCChhH------HHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 11 1222333444444443 34677899999999998 999999988888888887755444
Q ss_pred ----HhhhccchHHHHHHHHHHHHHHHHHHHHhcC
Q 007580 251 ----YIQMEHGWGSAFGALAIAMGISNMLFFIGTP 281 (597)
Q Consensus 251 ----~i~~~~gw~~~f~i~~~~~~~~~~~~~~~~~ 281 (597)
++.+..+|++.|++.++..+++.++.+...+
T Consensus 424 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 458 (479)
T PRK10077 424 DKNSWLVAHFHNGFSYWIYGCMGVLAALFMWKFVP 458 (479)
T ss_pred HhccchhhhccCccHHHHHHHHHHHHHHHHHhccc
Confidence 4556788999998877766666555544444
No 175
>TIGR00895 2A0115 benzoate transport.
Probab=99.07 E-value=4.6e-09 Score=111.09 Aligned_cols=149 Identities=15% Similarity=0.033 Sum_probs=116.2
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHhhhhHHHhhcccchHHHHHHHHHHHH
Q 007580 68 WIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYL 147 (597)
Q Consensus 68 ~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~lsD~~~GR~~~~~~~~~l~~ 147 (597)
++..+.+.+..++....++.+..+++ ++.+++|.+..+++.....+.++..++.+++|+++|| +|||+.+....+...
T Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~~~~~~~ 326 (398)
T TIGR00895 249 ARITVLLWLLYFMLLVGVYFLTNWLP-KLMVELGFSLSLAATGGALFNFGGVIGSIIFGWLADR-LGPRVTALLLLLGAV 326 (398)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhh-cchHHHHHHHHHHHH
Confidence 34455555566666777777777776 7778899999999999999999999999999999999 899855444333322
Q ss_pred HHHHHHHHhhhccccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhhchhhhhhhhhhccCCCCCchhhhhh
Q 007580 148 AGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHL 227 (597)
Q Consensus 148 ~g~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~R 227 (597)
+...+.... .+...+++..++.|++.++..+...++++|.+|+++ |
T Consensus 327 ~~~~~~~~~----------------------------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~------~ 372 (398)
T TIGR00895 327 FAVLVGSTL----------------------------FSPTLLLLLGAIAGFFVNGGQSGLYALMALFYPTAI------R 372 (398)
T ss_pred HHHHHHHHh----------------------------hCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCHHH------H
Confidence 222222211 234556677788999999999999999999999998 9
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHh
Q 007580 228 DRFFNFFYLSVTVGAIVAFTLVVYI 252 (597)
Q Consensus 228 ~~~~~~~~~~~~lg~~l~p~i~~~i 252 (597)
++.+++++....+|..++|.++|++
T Consensus 373 g~~~g~~~~~~~~g~~~g~~~~G~l 397 (398)
T TIGR00895 373 ATGVGWAIGIGRLGAIIGPILAGYL 397 (398)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHhc
Confidence 9999999999999999999999876
No 176
>TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily. This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli.
Probab=99.06 E-value=4.7e-09 Score=114.81 Aligned_cols=155 Identities=13% Similarity=0.106 Sum_probs=127.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHhhhhHHHhhcccchHHHHHHHHHHHHHHH
Q 007580 71 ALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGL 150 (597)
Q Consensus 71 ~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~lsD~~~GR~~~~~~~~~l~~~g~ 150 (597)
++...+..++..+.+++...++|.|+++.+|.++.++++......++..++.++.|++.|| +|||+.+.++.++..++.
T Consensus 257 ~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r-~~~~~~~~~g~~~~~~~~ 335 (485)
T TIGR00711 257 FTIGCVYMSLLGLGLYGSFYLLPLYLQQVLGYTALQAGLHILPVGLAPMLSSPIAGRMGDK-IDPRKLVTIGLILYAVGF 335 (485)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhh-cCcHHHHHHHHHHHHHHH
Confidence 3444555666777778888889999999999999999999999999999999999999999 899999999888887777
Q ss_pred HHHHHhhhccccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhhchhhhhhhhhhccCCCCCchhhhhhhhH
Q 007580 151 TGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRF 230 (597)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~R~~~ 230 (597)
.++.+... ++ .+...++...++.|+|.+...+.......+.+|+++ |+++
T Consensus 336 ~~~~~~~~-----~~-------------------~~~~~~~~~~~l~g~g~~~~~~~~~~~~~~~~~~~~------~g~~ 385 (485)
T TIGR00711 336 YWRAFTFT-----PD-------------------TPFLAIALPQFIRGFGMGCFFMPLTTIALSGLPPHK------IARG 385 (485)
T ss_pred HHHhccCC-----CC-------------------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHH------HhHH
Confidence 76653211 11 234456666788999999888888888888889888 9999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhcc
Q 007580 231 FNFFYLSVTVGAIVAFTLVVYIQMEH 256 (597)
Q Consensus 231 ~~~~~~~~~lg~~l~p~i~~~i~~~~ 256 (597)
.++++...++|..+|+.+.+.+.++.
T Consensus 386 ~~~~~~~~~~g~~ig~~i~g~~~~~~ 411 (485)
T TIGR00711 386 SSLSNFTRQLGGSIGTALITTILTNR 411 (485)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999887753
No 177
>PRK11902 ampG muropeptide transporter; Reviewed
Probab=99.05 E-value=2.3e-08 Score=106.92 Aligned_cols=153 Identities=15% Similarity=0.199 Sum_probs=105.1
Q ss_pred HHHHHHHHhhCCChHHHHHHHHHHH-HHHHHHhhhhHHHhhcccchHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCcc
Q 007580 91 NMVTFMFYVMHKSFADSSNAVNNFL-GISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNC 169 (597)
Q Consensus 91 ~l~~yl~~~~~~s~~~a~~~~~~~~-~~~~~~~~~~G~lsD~~~GR~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~c 169 (597)
+.+.|+.+++|++..+.++...... ++..++.+++|+++|| +|||+.+.++.++..+..+.+...... +
T Consensus 231 ~~~~~l~~~~G~~~~~~g~~~~~~~~~~~i~g~~~~g~l~~r-~g~~~~l~~~~~~~~l~~l~~~~~~~~----~----- 300 (402)
T PRK11902 231 LSTTFLIRGAGFSAGEVGIVNKTLGLAATIVGALAGGTLMVR-LGLYRSLMLFGVLQAVSNLGYWVLAVT----P----- 300 (402)
T ss_pred HHHHHHHHhcCCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHH-HhHHHHHHHHHHHHHHHHHHHHHHHhc----C-----
Confidence 4456777889999999998876544 5678899999999999 899998877776665554433221110 0
Q ss_pred cccccccCCCCCccchhHHHHHHHH----HHHHHhhhchhhhhhhhhhccCCCCCchhhhhhhhHHHHHHHHHHHHHHHH
Q 007580 170 DRISQLLGSCEPAKSWQMLYLYTVL----YITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVA 245 (597)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~l~~~~----~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~R~~~~~~~~~~~~lg~~l~ 245 (597)
.+...+++.. +..|++.+...+....++.+.+|.++ ++ ++....++|..++
T Consensus 301 ---------------~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~------~~----~~~~~~~l~~~~~ 355 (402)
T PRK11902 301 ---------------KHLWTMALAIGIENLCGGMGTAAFVALLMALCNRSFSATQ------YA----LLSALASVGRVYV 355 (402)
T ss_pred ---------------CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcHHH------HH----HHHHHHHHHHHHH
Confidence 1233333333 34566667777777778887777554 43 3444446777666
Q ss_pred HHHHHHhhhccchHHHHHHHHHHHHHHHHHHHH
Q 007580 246 FTLVVYIQMEHGWGSAFGALAIAMGISNMLFFI 278 (597)
Q Consensus 246 p~i~~~i~~~~gw~~~f~i~~~~~~~~~~~~~~ 278 (597)
+.++|++.+..||+..|.+.+++.+++.++...
T Consensus 356 ~~~~G~l~~~~G~~~~f~~~~~~~~~~~~~~~~ 388 (402)
T PRK11902 356 GPTSGYLVEAYGWPGFYLMTVVIALPGLALLWL 388 (402)
T ss_pred HHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHH
Confidence 778999999999999999888777666555443
No 178
>TIGR00887 2A0109 phosphate:H+ symporter. This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083).
Probab=99.05 E-value=3.9e-09 Score=116.31 Aligned_cols=181 Identities=15% Similarity=0.082 Sum_probs=115.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChHHHHH------------HHHHHHHHHHHHhhhhHHHhhcccchH
Q 007580 69 IAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSN------------AVNNFLGISQASSVLGGFLADAYLGRY 136 (597)
Q Consensus 69 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~------------~~~~~~~~~~~~~~~~G~lsD~~~GR~ 136 (597)
+..+.+....++..+.+|++..++|.+++ +.|++..+++. ......++..++.+++++++|| +|||
T Consensus 288 ~~~~~~~~~~~~~~~~~y~~~~~~p~i~~-~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~l~dr-~gRR 365 (502)
T TIGR00887 288 KHLLGTAGSWFLLDIAFYGVNLNQKVILS-AIGYSPPAATNNAYEELYKTAVGNLIIALAGTVPGYWVTVFLVDI-IGRK 365 (502)
T ss_pred HHHHHHHHHHHHHHHHHHccccccHHHHH-HHcCCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh-hcch
Confidence 33444444555666777888888777774 67876543221 1222334556678889999999 8999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhccccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhhchhhhhhhhhhccC
Q 007580 137 WTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQF 216 (597)
Q Consensus 137 ~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~~ 216 (597)
++++++.++..++..+..+..... + .+ ..+....+...++..+..+....+.+|.+
T Consensus 366 ~~l~~~~~~~~~~~~~l~~~~~~~---~--------------------~~-~~~~~~~~~~~~~~~~~~~~~~~~~~E~~ 421 (502)
T TIGR00887 366 PIQLMGFFILTVLFFVLGFAYNHL---S--------------------TH-GFLAIYVLAQFFANFGPNATTFIVPGEVF 421 (502)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhc---c--------------------hh-HHHHHHHHHHHHHhcCCCchhhhhhhccC
Confidence 999888877776666555432100 0 11 11111111222223334556677789999
Q ss_pred CCCCchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhc----------cchHHHHHHHHHHHHHHHHHHHHhcCc
Q 007580 217 DERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQME----------HGWGSAFGALAIAMGISNMLFFIGTPL 282 (597)
Q Consensus 217 ~~~~~~~~~~R~~~~~~~~~~~~lg~~l~p~i~~~i~~~----------~gw~~~f~i~~~~~~~~~~~~~~~~~~ 282 (597)
|.+. |+++.++.+....+|++++|.+.+++.+. .++...|++.++..+++.+.. +..++
T Consensus 422 p~~~------R~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~-~~lpE 490 (502)
T TIGR00887 422 PTRY------RSTAHGISAASGKAGAIIGQFGFLYLAQHGDPTKGYPTGIWMGHVLEIFALFMFLGILFT-LLIPE 490 (502)
T ss_pred chhH------HHHHHHHHHHHhhhHHHHHHHHhhhhhccccccccccccccchHHHHHHHHHHHHHHHHh-eEecc
Confidence 9999 99999999999999999999999998874 334556666666555554433 33343
No 179
>TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter. GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners.
Probab=99.04 E-value=8.4e-09 Score=111.25 Aligned_cols=160 Identities=16% Similarity=0.051 Sum_probs=119.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHhhhhHHHhhcccchHHHHHHHHHHHHHH
Q 007580 70 AALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAG 149 (597)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~lsD~~~GR~~~~~~~~~l~~~g 149 (597)
.++.+++..++..++.+......+.|++..++ +....++......++..++.++.++++|| +|||+++.++.++..++
T Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~i~~ii~~~~~~~l~~r-~g~~~~~~~~~~~~~~~ 300 (437)
T TIGR00792 223 QLLILCLAYLFYNLAFNIKNGVQVYYFTYVLG-DPELFSYMGSIAIVAGLIGVLLFPRLVKK-FGRKILFAGGILLMVLG 300 (437)
T ss_pred HHHHHHHHHHHHHHHHHHHcchhheeEeeecC-ChHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCcHHHHHHHHHHHHHH
Confidence 44555556666666666555555555554555 45566777777888999999999999999 89999999998888877
Q ss_pred HHHHHHhhhccccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhhchhhhhhhhhhccCCCCCch-hhhhhh
Q 007580 150 LTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKD-YKTHLD 228 (597)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~-~~~~R~ 228 (597)
.+.+.+.. .+...+++..++.|++.+...+...++++|..|.++.. ....++
T Consensus 301 ~~~~~~~~---------------------------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G 353 (437)
T TIGR00792 301 YLIFFFAG---------------------------SNLPLILVLIILAGFGQNFVTGLVWALVADTVDYGEWKTGVRAEG 353 (437)
T ss_pred HHHHHHcc---------------------------hhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhcCccchH
Confidence 76665431 23455666777889999999999999999998743211 011278
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhhccch
Q 007580 229 RFFNFFYLSVTVGAIVAFTLVVYIQMEHGW 258 (597)
Q Consensus 229 ~~~~~~~~~~~lg~~l~p~i~~~i~~~~gw 258 (597)
..++++++...+|..+++.+.|++.+..||
T Consensus 354 ~~~~~~~~~~~~g~~lg~~i~g~ll~~~G~ 383 (437)
T TIGR00792 354 LVYSVRTFVRKLGQALAGFLVGLILGIIGY 383 (437)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 899999999999999999999999887666
No 180
>KOG2816 consensus Predicted transporter ADD1 (major facilitator superfamily) [General function prediction only]
Probab=99.03 E-value=1.4e-07 Score=101.59 Aligned_cols=337 Identities=14% Similarity=0.105 Sum_probs=195.9
Q ss_pred HHHHHHHHHHhhCCChH-HHHHHHHHH----HHHHHHHhhhhHHHhhcccchHHHHHHHHHHHHHHHHHHHHhhhccccC
Q 007580 89 SVNMVTFMFYVMHKSFA-DSSNAVNNF----LGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFM 163 (597)
Q Consensus 89 ~~~l~~yl~~~~~~s~~-~a~~~~~~~----~~~~~~~~~~~G~lsD~~~GR~~~~~~~~~l~~~g~~~~~~~~~~~~~~ 163 (597)
..+...+.....+.+.. ..+...... .+...+..++-|.++|| +|||..+.+..+...+......+.
T Consensus 41 ~~~~~~~~~ct~~~~~~~~~~~~~~~~~~~~~~~~~i~s~~iG~lSD~-~grk~~L~~~~~~~~l~~~~~~~~------- 112 (463)
T KOG2816|consen 41 MTNVILYLACTFGDDYQLENGLLLGVKQVTAGLLTLISSPLIGALSDR-YGRKVVLLLPLFGTILPALCLLFQ------- 112 (463)
T ss_pred hhhhhhhhhcccccCccchhhhhhhHHHHhhHHHHHHHHhhhHHhhhh-hhhhhhHHHHHHHHHHhHHHHHHH-------
Confidence 35556666666555433 233444444 46778888999999999 799999999988887777776664
Q ss_pred CCCCcccccccccCCCCCccchhHHHHHHHHHHHHH--hhhchhhhhhhhhhccCCCCCchhhhhhhhHHHHHHHHHHHH
Q 007580 164 PNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGF--GAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVG 241 (597)
Q Consensus 164 ~~~~~c~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~--g~g~~~~~~~~~~ad~~~~~~~~~~~~R~~~~~~~~~~~~lg 241 (597)
. +++++ +.++ +.+.......++++|....++ |...+++.+.....+
T Consensus 113 ----------------------~-~~~~~---~~~l~g~~~~~~s~~~a~vadis~~~~------R~~~~gll~~~~~~~ 160 (463)
T KOG2816|consen 113 ----------------------G-YWFFL---LLGLSGGFSAIFSVGFAYVADISSEEE------RSSSIGLLSGTFGAG 160 (463)
T ss_pred ----------------------H-HHHhh---hcccccchhhhhhhhhhheeeccchhH------HHHHHHHHHHHHHHH
Confidence 2 22222 3333 334566777888999999998 999999999999999
Q ss_pred HHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHhcCcccccCCCC-CchhhHHHHHHHHHHhhhcccCcccccccc
Q 007580 242 AIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGTPLYRHRLPGG-SPLTRVAQVLVAAFRKRHAAFSSSELIGLY 320 (597)
Q Consensus 242 ~~l~p~i~~~i~~~~gw~~~f~i~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 320 (597)
..++|.+++++.+..|.-..|.+.++..++..+-.....++...++.+. ...... .+.+. ..
T Consensus 161 ~~~~p~~~~~~~~~~~~a~~f~ia~~~~~~~~~y~~~~l~Esl~~~~~~~~~~~~~--------------~~~~~---~~ 223 (463)
T KOG2816|consen 161 LVIGPALGGYLVKFLGIALVFLIAAASGILSLLYMLLFLPESLQEKERSDATLREL--------------TPGSL---DS 223 (463)
T ss_pred HhHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHhhccccccCcccccccccccc--------------CCCcc---cc
Confidence 9999999999999999999999999888877776666666654443322 110000 00000 00
Q ss_pred ccCCCcccccCCcccccCCcchhhH-HHhhhhhcc--cCC-CCCC----cc-ccchhhhhhhHhHhhhhhHHHHHHHHHH
Q 007580 321 EVPGKHSAIKGSGKIAHTDDFRCLD-KAALELKED--VIN-PSPW----KL-CTVTQVEEVKTLVRLVPIPACTIMLNVI 391 (597)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~~~~~~l~-~a~~~~~~~--~~~-~~~~----~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 391 (597)
++ ..+..+...+..+++..-.+- .+......+ +.. ..+. +. +..++....+.+.... ..
T Consensus 224 ~~--~~~~~~~~~~~~~~r~~l~l~l~~~~~~~~~~~~~~~~~~~yl~~~f~w~~~~~s~~~~~~~~~----------~~ 291 (463)
T KOG2816|consen 224 SH--VADAFQSLTKVGPDRLLLLLLLVAFLSSLPEAGGASDVLLLYLKAKFGWNKKEFSDLLSLVSIL----------GI 291 (463)
T ss_pred hh--hhhhhhhhcccCCCccchHHHHHHHHHHHHHhcCceeEEEEEEeeecCcCHHHHHHHHHHHHHH----------HH
Confidence 00 000001111111111111111 111111000 000 0000 00 0011111111110000 00
Q ss_pred HhcchhhHHHHHhhhcccCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhcCccccccCcCccchHHHHHHH
Q 007580 392 LTEFLTLSVQQAYTMNTHMGHPRGASQLQRVGIGLAVSILSVIWAGIFERYRRNYAISHGYEFSFLTAMPDLSAYWLLIQ 471 (597)
Q Consensus 392 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~G~~l~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~s~~~l~~~ 471 (597)
..+..-.... .. .......+.+|++.-.+.+++.++.. .. |++..
T Consensus 292 i~~l~~~~~l-----~~------~l~~~~~i~lGl~~~~~~~~~~af~~-----------------------~~-w~~~~ 336 (463)
T KOG2816|consen 292 ISQLLLLPLL-----SS------ILGEKRLISLGLLSEFLQLLLFAFAT-----------------------ET-WMMFA 336 (463)
T ss_pred HHHHHHHHHH-----HH------HHhhhhHhhHHHHHHHHHHHHHHHhc-----------------------cc-hhhhH
Confidence 0110000000 00 01111256778888888877777652 22 34444
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhccC
Q 007580 472 YCLIGIAEVFCIVGLLEFLYEEAPDAMKSIGSAYAALAGGLGCFAASILNSIIKSVTG 529 (597)
Q Consensus 472 ~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~gl~~~~~~lg~~lg~~l~~~v~~~~g 529 (597)
.........+..|...+++..+..++.+|.+.++......+.+.+++.+.+.+...+-
T Consensus 337 ~~v~~~~~~~~~pa~~s~~s~~v~~~e~g~v~~~is~i~~l~~~~~~~~~~~i~~~t~ 394 (463)
T KOG2816|consen 337 AGVVVALAGIVFPAIRAFASILVSPEEQGKVFGIISGIEGLSGVVSPALYGNIFALTL 394 (463)
T ss_pred HHHHHHhhcchhHHHHhHHHhhcccccccchhhHHHHHHHHhhhhhHHHHHHHHHHHH
Confidence 4455555678889999999999999999999999999999999999999998766553
No 181
>PRK10133 L-fucose transporter; Provisional
Probab=99.01 E-value=1.8e-08 Score=108.91 Aligned_cols=160 Identities=10% Similarity=0.009 Sum_probs=119.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHH-HHhhCCChHHHHHHHHHHHHHHHHHhhhhHHHhhcccchHHHHHHHHHHHHHHHHHHH
Q 007580 76 GNEMAERMAYFGLSVNMVTFM-FYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGIT 154 (597)
Q Consensus 76 ~~~~~~~~~~~~~~~~l~~yl-~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~lsD~~~GR~~~~~~~~~l~~~g~~~~~ 154 (597)
+..++.....++...+++.|+ ++.+|+++.++++....+.++..++.+++|+++|| +|||+++..+.++..++..+..
T Consensus 265 l~~~~~~~~~~~~~~~~~~~l~~~~~g~s~~~ag~~~~~~~~~~~vG~~~~g~l~~r-~g~~~~l~~~~~~~~~~~~~~~ 343 (438)
T PRK10133 265 LAQFCYVGAQTACWSYLIRYAVEEIPGMTAGFAANYLTGTMVCFFIGRFTGTWLISR-FAPHKVLAAYALIAMALCLISA 343 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCHHHHHHHHHHHHHHHHHHHH
Confidence 334555566666777888896 56789999999999999999999999999999999 8999999888777665554444
Q ss_pred HhhhccccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhhchhhhhhhhhhccCCCCCchhhhhhhhHHHHH
Q 007580 155 LCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFF 234 (597)
Q Consensus 155 ~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~R~~~~~~~ 234 (597)
+. .+. ..+....+.|+|.+.+.|...+...+.++++. +.+.++.
T Consensus 344 ~~----------------------------~~~-~~~~~~~l~glg~~~i~P~~~s~a~~~~~~~~-------~~as~l~ 387 (438)
T PRK10133 344 FA----------------------------GGH-VGLIALTLCSAFMSIQYPTIFSLGIKNLGQDT-------KYGSSFI 387 (438)
T ss_pred Hc----------------------------CCh-HHHHHHHHHHHHHHHHHHHHHHHHHcccchhh-------ccchhHH
Confidence 32 111 22455678999999999999999999987643 3333333
Q ss_pred HHHHHHHHHHHHHHHHHhhhccc-hHHHHHHHHHHHHHHH
Q 007580 235 YLSVTVGAIVAFTLVVYIQMEHG-WGSAFGALAIAMGISN 273 (597)
Q Consensus 235 ~~~~~lg~~l~p~i~~~i~~~~g-w~~~f~i~~~~~~~~~ 273 (597)
.. ..+|+.++|.+.|++.+..| -+..|++..+..+...
T Consensus 388 ~~-~~~g~~~~~~i~G~l~~~~g~~~~~~~v~~~~~~~~~ 426 (438)
T PRK10133 388 VM-TIIGGGIVTPVMGFVSDAAGNIPTAELIPALCFAVIF 426 (438)
T ss_pred hH-HhccchHHHHHHHHHHHhccchHHHHHHHHHHHHHHH
Confidence 32 33678889999999999887 7888877666544433
No 182
>TIGR00896 CynX cyanate transporter. This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate.
Probab=99.00 E-value=1.2e-08 Score=106.96 Aligned_cols=150 Identities=15% Similarity=0.073 Sum_probs=115.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHhhhhHHHhhccc-chHHHHHHHHHHHHHH
Q 007580 71 ALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYL-GRYWTIAIFTTIYLAG 149 (597)
Q Consensus 71 ~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~lsD~~~-GR~~~~~~~~~l~~~g 149 (597)
.+.+.+..++....++++..++|.|+++ .|.+..+++...+.+.++..++.++.|+++|| + +||+++.++.++..++
T Consensus 199 ~~~~~~~~~~~~~~~~~~~~~lp~~~~~-~g~~~~~~g~~~~~~~~~~i~~~~~~g~l~dr-~~~~~~~~~~~~~~~~~~ 276 (355)
T TIGR00896 199 AWQVTVFFGLQSGLYYSLIGWLPAILIS-HGASAATAGSLLALMQLAQAASALLIPALARR-VKDQRGIVAVLAVLQLVG 276 (355)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCCCHHHHHHHHHHHHHHHHHHHHhHHHHHhh-hccchHHHHHHHHHHHHH
Confidence 4444455556667778888899999865 79999999999999999999999999999999 7 5677777777777777
Q ss_pred HHHHHHhhhccccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhhchhhhhhhhhhccCCC-CCchhhhhhh
Q 007580 150 LTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDE-RSKDYKTHLD 228 (597)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~~~~-~~~~~~~~R~ 228 (597)
...+.+... .. .. ....+.|++.+...+...+.+.+..++ ++ ++
T Consensus 277 ~~~~~~~~~--------------------------~~--~~-~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~------~g 321 (355)
T TIGR00896 277 LCGLLFAPM--------------------------HG--LW-AWALVLGLGQGGAFPLALTLIGLRSRQAAQ------AA 321 (355)
T ss_pred HHHHHHhhh--------------------------hH--HH-HHHHHHHHhhhhHhHHHHHHHHHhccCHHH------HH
Confidence 666654411 11 11 134578999999988887777766554 34 67
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhhccc
Q 007580 229 RFFNFFYLSVTVGAIVAFTLVVYIQMEHG 257 (597)
Q Consensus 229 ~~~~~~~~~~~lg~~l~p~i~~~i~~~~g 257 (597)
..+++.+...++|..++|.+.|++.++.|
T Consensus 322 ~~~~~~~~~~~~~~~~gp~~~G~l~~~~g 350 (355)
T TIGR00896 322 ALSAMAQSIGYLLAALGPLFVGVLHDISG 350 (355)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 88888888888999999999999998776
No 183
>PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily. EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function [].
Probab=99.00 E-value=3.2e-08 Score=108.63 Aligned_cols=167 Identities=11% Similarity=0.043 Sum_probs=140.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHhhhhHHHhhcccchHHHHHHHHHHHHHHHHHHHH
Q 007580 76 GNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITL 155 (597)
Q Consensus 76 ~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~lsD~~~GR~~~~~~~~~l~~~g~~~~~~ 155 (597)
+..++..+....+...+|.+..+.+|.+....|++.+.+.+|..++.++.+++.++ +++++.+..+.+++.++++.+++
T Consensus 225 ~~~~~~~l~~~a~~aLlPl~a~~~l~~~a~~yGll~a~~gvGai~Gal~~~~l~~~-~~~~~lv~~~~~~~a~~~~~lal 303 (524)
T PF05977_consen 225 LRSFLFNLFASAVWALLPLFARDVLGGGASGYGLLLAAFGVGAILGALLLPRLRRR-LSSRRLVLLASLLFALALLLLAL 303 (524)
T ss_pred HHHHHHHHhhhHHHHhhhHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHHhhcc-cCcchhhHHHHHHHHHHHHHHhc
Confidence 33344444444555667888889999999999999999999999999999999999 89999999998888888877777
Q ss_pred hhhccccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhhchhhhhhhhhhccCCCCCchhhhhhhhHHHHHH
Q 007580 156 CATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFY 235 (597)
Q Consensus 156 ~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~R~~~~~~~~ 235 (597)
+ .+.+..++..++.|++.........+.+-...|++. ||+.++++.
T Consensus 304 ~----------------------------~~~~~~~~~l~l~G~~~~~~~~~~~t~~Q~~~P~~~------~GRv~si~~ 349 (524)
T PF05977_consen 304 S----------------------------PSFWLALIALFLAGAAWIIANSSLNTLVQLSVPDWV------RGRVFSIYQ 349 (524)
T ss_pred c----------------------------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHH------HhHHHHHHH
Confidence 6 466777788889999999988888999999999999 999999999
Q ss_pred HHHHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHH
Q 007580 236 LSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFF 277 (597)
Q Consensus 236 ~~~~lg~~l~p~i~~~i~~~~gw~~~f~i~~~~~~~~~~~~~ 277 (597)
.....+..+|..+.|++.+..|-+..+.+.++..+++.++..
T Consensus 350 ~~~~g~~~lGsll~G~la~~~g~~~al~~a~~~lll~~~~~~ 391 (524)
T PF05977_consen 350 MVFFGGMPLGSLLWGFLADHFGVRTALLIAGAALLLSALIAL 391 (524)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999988877766555554443
No 184
>TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily. This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033.
Probab=99.00 E-value=4.3e-08 Score=103.50 Aligned_cols=156 Identities=12% Similarity=0.055 Sum_probs=113.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHhhhhHHHhhcccchHHHHHHHHHHHHHHHHHHHHhh
Q 007580 78 EMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCA 157 (597)
Q Consensus 78 ~~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~lsD~~~GR~~~~~~~~~l~~~g~~~~~~~~ 157 (597)
..+.....+....+.+.|+.+++|.++.+++.......++..++.+++|+++|| +|||+.+.++.++..++..++....
T Consensus 215 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 293 (385)
T TIGR00710 215 YGASFGGFFAFFSGAPFVYIDIMGVSPSVFGLLFALNIIAMIFGGFLNGRFIKK-WGAKSLLRMGLILFAVSAVLLEITA 293 (385)
T ss_pred HHHHHHHHHHHHHcChHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444556666677888888999999999999999999999999999999999 8999999888877777776665542
Q ss_pred hccccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhhchhhhhhhhhhccCCCCCchhhhhhhhHHHHHHHH
Q 007580 158 TMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLS 237 (597)
Q Consensus 158 ~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~R~~~~~~~~~~ 237 (597)
... ......++....+.|++.+...+.......|.+| ++ |++..++++..
T Consensus 294 ~~~-----------------------~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~-~~------~g~~~~~~~~~ 343 (385)
T TIGR00710 294 ILG-----------------------LGSWAMIIGPMMFVGIGNSMISSIAMAYALEDFP-HV------AGTASALFGTL 343 (385)
T ss_pred Hhc-----------------------cchHHHHHHHHHHHHHHHHHHHHHHHHHHhccCc-cc------chHHHHHHHHH
Confidence 100 0123445556677889999888888888888876 45 78889887776
Q ss_pred HHHHHHHHHHHHHHhhhccchHHHHHH
Q 007580 238 VTVGAIVAFTLVVYIQMEHGWGSAFGA 264 (597)
Q Consensus 238 ~~lg~~l~p~i~~~i~~~~gw~~~f~i 264 (597)
...++.+.+.+.+.+.+..+|...+..
T Consensus 344 ~~~~g~i~~~~~~~~~~~~~~~~~~~~ 370 (385)
T TIGR00710 344 RLVLGAIVGYLVSLIHGNTAWPMSLSC 370 (385)
T ss_pred HHHHHHHHHHHHHhccccChHHHHHHH
Confidence 655444444445566555555554443
No 185
>PRK10054 putative transporter; Provisional
Probab=99.00 E-value=1.1e-08 Score=109.08 Aligned_cols=169 Identities=12% Similarity=-0.017 Sum_probs=124.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh--hCCChHHHHHHHHHHHHHHHHHhhhhHHHhhcccchHHHHHHHHHHHHHHHH
Q 007580 74 IFGNEMAERMAYFGLSVNMVTFMFYV--MHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLT 151 (597)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~l~~yl~~~--~~~s~~~a~~~~~~~~~~~~~~~~~~G~lsD~~~GR~~~~~~~~~l~~~g~~ 151 (597)
..+..++..+.+.....+++.|+... .+.+....+.....+........++.|++.|| +|||+.+..+.++..++..
T Consensus 211 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~-~~~~~~l~~~~~~~~~~~~ 289 (395)
T PRK10054 211 FTCSGFLASFVSGAFASCISQYVMVVADSDFAEKVVAVVLPVNAAMVVSLQYSVGRRLNA-ANIRPLMTAGTLCFVIGLV 289 (395)
T ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHhcccchHHHHHHHHHHhhhhheeeehhHHHHHHcc-CCchhHHHHHHHHHHHHHH
Confidence 33444555555444555666776543 34455566677777777777777888999999 8999999989888888777
Q ss_pred HHHHhhhccccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhhchhhhhhhhhhccCCCCCchhhhhhhhHH
Q 007580 152 GITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFF 231 (597)
Q Consensus 152 ~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~R~~~~ 231 (597)
...++. .+...++++..+.++|.+...|...+.+.+..|++. |++++
T Consensus 290 ~~~~~~---------------------------~~~~~~~~~~~~~~~g~~~~~p~~~~~~~~~~p~~~------~~~~~ 336 (395)
T PRK10054 290 GFIFSG---------------------------NSLLLWGMSAAVFTVGEIIYAPGEYMLIDHIAPPGM------KASYF 336 (395)
T ss_pred HHHHcc---------------------------hHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhCCccc------ceehH
Confidence 666431 244556677788999998888888999999999888 88888
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHH
Q 007580 232 NFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFF 277 (597)
Q Consensus 232 ~~~~~~~~lg~~l~p~i~~~i~~~~gw~~~f~i~~~~~~~~~~~~~ 277 (597)
+..+ ...+|..+||.++|++.|+.|....|++.+....+++++.+
T Consensus 337 ~~~~-~~~~G~~~Gp~~~G~l~~~~g~~~~~~~~~~~~~~~~~~~~ 381 (395)
T PRK10054 337 SAQS-LGWLGAAINPLVSGVILTTLPPWSLFVILALAIVAAWLLML 381 (395)
T ss_pred hHHH-HHHHHHHHHHHHHHHHHHHcChhhHHHHHHHHHHHHHHHHH
Confidence 7654 56689999999999999999988888876665555544433
No 186
>PRK10213 nepI ribonucleoside transporter; Reviewed
Probab=99.00 E-value=5.9e-08 Score=103.51 Aligned_cols=164 Identities=10% Similarity=-0.020 Sum_probs=116.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHhhhhHHHhhcccchHHHHHHHHHHHHH-H
Q 007580 71 ALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLA-G 149 (597)
Q Consensus 71 ~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~lsD~~~GR~~~~~~~~~l~~~-g 149 (597)
++..++..++.....++...++++++.+++|++..+.+.....+.++..++.++.|++.|| .+|+ .+..+.++..+ +
T Consensus 218 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~s~~~~g~~~~~~~~~~iig~~~~~~l~~r-~~~~-~l~~~~~~~~~~~ 295 (394)
T PRK10213 218 VMAGMIAIFMSFAGQFAFFTYIRPVYMNLAGFGVDGLTLVLLSFGIASFVGTSLSSFILKR-SVKL-ALAGAPLVLAVSA 295 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHhc-cchh-HHHHHHHHHHHHH
Confidence 3333334444445555666666555567889999999999999999999999999999999 5544 44444333333 3
Q ss_pred HHHHHHhhhccccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhhchhhhhhhhhhccCCCCCchhhhhhhh
Q 007580 150 LTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDR 229 (597)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~R~~ 229 (597)
..+.... .+...+.+..++.|++.+...+...+++.+..|+ + +++
T Consensus 296 ~~l~~~~----------------------------~~~~~~~~~~~l~G~~~~~~~~~~~~~~~~~~~~-~------~~~ 340 (394)
T PRK10213 296 LVLTLWG----------------------------SDKIVATGVAIIWGLTFALVPVGWSTWITRSLAD-Q------AEK 340 (394)
T ss_pred HHHHHHh----------------------------hhHHHHHHHHHHHHHHHHhhhHHHHHHHHHHCcc-c------HHH
Confidence 3333222 2345666677888999999999889888888873 3 455
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHH
Q 007580 230 FFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGI 271 (597)
Q Consensus 230 ~~~~~~~~~~lg~~l~p~i~~~i~~~~gw~~~f~i~~~~~~~ 271 (597)
..+++....++|..+||.++|++.+..|++..+...+.+..+
T Consensus 341 ~~~~~~~~~~lg~~~G~~l~G~l~~~~g~~~~~~~~~~~~~~ 382 (394)
T PRK10213 341 AGSIQVAVIQLANTCGAAIGGYALDNIGLTSPLMLSGTLMLL 382 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccChhhHHHHHHHHHHH
Confidence 666667777899999999999999999998888776654433
No 187
>PRK14995 methyl viologen resistance protein SmvA; Provisional
Probab=99.00 E-value=1.1e-08 Score=112.64 Aligned_cols=154 Identities=14% Similarity=0.062 Sum_probs=127.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHhhhhHHHhhcccchHHHHHHHHHHHHHH
Q 007580 70 AALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAG 149 (597)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~lsD~~~GR~~~~~~~~~l~~~g 149 (597)
.+....+..++..+..++...+++.|+++.+|.++.+++.....+.++..++.+++|++.|| +|||+.+..+.++..++
T Consensus 260 ~~~~~~~~~~~~~~~~~~~~~~~~~~lq~v~g~s~~~ag~~~~~~~~~~~~~~~~~g~l~~r-~g~~~~~~~g~~~~~~~ 338 (495)
T PRK14995 260 IILSGVVMAMTAMITLVGFELLMAQELQFVHGLSPLEAGMFMLPVMVASGFSGPIAGILVSR-LGLRLVATGGMALSALS 338 (495)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCchHHHHHHHHHHHHH
Confidence 34455566666677777888889999999999999999999999999999999999999999 89999998888888777
Q ss_pred HHHHHHhhhccccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhhchhhhhhhhhhccCCCCCchhhhhhhh
Q 007580 150 LTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDR 229 (597)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~R~~ 229 (597)
.+++..... . .+....++..++.|+|.|...+.....+.+..|+++ ++.
T Consensus 339 ~~~l~~~~~------~-------------------~~~~~~~~~~~l~G~g~g~~~~~~~~~~~~~~~~~~------~g~ 387 (495)
T PRK14995 339 FYGLAMTDF------S-------------------TQQWQAWGLMALLGFSAASALLASTSAIMAAAPPEK------AAA 387 (495)
T ss_pred HHHHHHhcC------C-------------------CchHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCHHh------cch
Confidence 766554311 0 233445667788999999998888888889999988 999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhc
Q 007580 230 FFNFFYLSVTVGAIVAFTLVVYIQME 255 (597)
Q Consensus 230 ~~~~~~~~~~lg~~l~p~i~~~i~~~ 255 (597)
+.++++...++|..+|+.+.+.+.++
T Consensus 388 ~~~~~~~~~~lG~~~G~ai~g~i~~~ 413 (495)
T PRK14995 388 AGAIETMAYELGAGLGIAIFGLLLSR 413 (495)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999988653
No 188
>PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated
Probab=98.98 E-value=1.8e-08 Score=122.11 Aligned_cols=162 Identities=10% Similarity=-0.010 Sum_probs=128.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChH-HHHHHHHHHHHHHHHHhhhhHHHhhcccchHHHHHHHHHHHHHHH
Q 007580 72 LFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFA-DSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGL 150 (597)
Q Consensus 72 ~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~-~a~~~~~~~~~~~~~~~~~~G~lsD~~~GR~~~~~~~~~l~~~g~ 150 (597)
+..++..++.....+.+..+++.|+.+.+|++.. ..+++...+.++..++.++.|+++|| +++++++.++.++..++.
T Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~g~~~~~~~ig~~~g~~~~g~l~~r-~~~~~~~~~~~~~~~~~~ 313 (1146)
T PRK08633 235 WLAIIGLSYFWFISQLAQANFPAYAKEVLGLDNTFQVQYLLAASAIGIGIGSLLAGRLSGR-HIELGLVPLGALGLALSL 313 (1146)
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhCC-ceEccchhHHHHHHHHHH
Confidence 3333334444445566677889999999999998 89999999999999999999999999 899998888887777776
Q ss_pred HHHHHhhhccccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhhchhhhhhhhhhccCCCCCchhhhhhhhH
Q 007580 151 TGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRF 230 (597)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~R~~~ 230 (597)
+++.+. .+...+++..++.|++.+...+...+++.+.+|++. |+++
T Consensus 314 ~~~~~~----------------------------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~------rg~~ 359 (1146)
T PRK08633 314 FLLPTA----------------------------PSLASVLVLFFLFGFSAGLFIVPLNALIQFRAPEKE------LGKV 359 (1146)
T ss_pred HHHHHh----------------------------hhHHHHHHHHHHHHHHHHHhhHHHHHHHhhcCCccc------hhhh
Confidence 666654 345566777888999999999999999999999999 9999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhh-ccchHHHHHHHHHH
Q 007580 231 FNFFYLSVTVGAIVAFTLVVYIQM-EHGWGSAFGALAIA 268 (597)
Q Consensus 231 ~~~~~~~~~lg~~l~p~i~~~i~~-~~gw~~~f~i~~~~ 268 (597)
++++++..++|..+++.+++.+.. ..++...|++.+.+
T Consensus 360 ~~~~~~~~~lg~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 398 (1146)
T PRK08633 360 LAANNFLQNVGMLLFLALTTLFSGLGLSPAGLFYLIALV 398 (1146)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHH
Confidence 999999999999888888776654 23555566554443
No 189
>PRK11646 multidrug resistance protein MdtH; Provisional
Probab=98.97 E-value=2.1e-08 Score=107.17 Aligned_cols=152 Identities=11% Similarity=0.019 Sum_probs=108.4
Q ss_pred HHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHhhhhHHHhhcccchHHHHHHHHHHHHHHHHHHHHhhhccccCCCC
Q 007580 87 GLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQ 166 (597)
Q Consensus 87 ~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~lsD~~~GR~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~ 166 (597)
....++|.|+++..+ ++.+.++......++...+....+++.|+.++.++.+..+.++..++..+++.+
T Consensus 226 ~~~~~~p~~~~~~~~-~~~~~g~l~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~l~~~---------- 294 (400)
T PRK11646 226 QVMLMLPIMVNDIAG-SPSAVKWMYAIEACLSLTLLYPIARWSEKRFRLEHRLMAGLLIMSLSMFPIGMV---------- 294 (400)
T ss_pred HHHHhhhhhHHhhcC-CchHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHh----------
Confidence 344567888876655 667777777776665554444445555543676677777777777777666554
Q ss_pred CcccccccccCCCCCccchhHHHHHHHHHHHHHhhhchhhhhhhhhhccCCCCCchhhhhhhhHHHHHHHHHHHHHHHHH
Q 007580 167 DNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAF 246 (597)
Q Consensus 167 ~~c~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~R~~~~~~~~~~~~lg~~l~p 246 (597)
++...+++...+.++|.+...|...+++.+..|+++ |++.+++++...++|..+||
T Consensus 295 ------------------~~~~~~~~~~~l~~~g~~~~~p~~~~~~~~~~p~~~------~g~~~g~~~~~~~~g~~ig~ 350 (400)
T PRK11646 295 ------------------SNLQQLFTLICLFYIGSIIAEPARETLSASLADARA------RGSYMGFSRLGLALGGAIGY 350 (400)
T ss_pred ------------------hhHHHHHHHHHHHHHHHHHHHccHHHHHHhcCCccc------chhhhhHHHHHHHHHHHhcc
Confidence 344455566677888888888899999999999999 99999999999999999999
Q ss_pred HHHHHhhhcc---c-hHHHHHHHHHHHHHHH
Q 007580 247 TLVVYIQMEH---G-WGSAFGALAIAMGISN 273 (597)
Q Consensus 247 ~i~~~i~~~~---g-w~~~f~i~~~~~~~~~ 273 (597)
.++|++.++. + ....+++.++..++..
T Consensus 351 ~l~G~l~~~~~~~~~~~~~~~~~~~~~~~~~ 381 (400)
T PRK11646 351 IGGGWLFDLGKALNQPELPWMMLGIIGLITL 381 (400)
T ss_pred cchHHHHHHHhhcCCcchHHHHHHHHHHHHH
Confidence 9999998864 2 2444444444444333
No 190
>KOG3626 consensus Organic anion transporter [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.97 E-value=2e-07 Score=103.33 Aligned_cols=206 Identities=13% Similarity=0.101 Sum_probs=152.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHhhhhHHHhhcccchHHHHHHHHHHHHHHHH
Q 007580 72 LFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLT 151 (597)
Q Consensus 72 ~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~lsD~~~GR~~~~~~~~~l~~~g~~ 151 (597)
.++.+..+...+. .++.....+-+.+.+++++.+.|++.+.|-++..+...+..+.+-| .-|-+.+-++.+++.+|.+
T Consensus 100 ~~l~~~~~~q~l~-~~y~~s~IttiErRF~i~Ss~sG~I~s~~dig~~l~i~fVsYfG~r-~HrPr~Ig~G~~~m~lgsl 177 (735)
T KOG3626|consen 100 VLLSLAAFAQGLY-VGYFNSVITTIERRFKISSSQSGLIASSYDIGNLLLIIFVSYFGSR-GHRPRWIGIGLVLMGLGSL 177 (735)
T ss_pred HHHHHHHHHHHhh-hhhhhhhhhhhhhhcCCCCCcceeEeeecccchhhhhHhHHHhccc-cCccceeeechhHHHHHHH
Confidence 3344444555555 4777888889999999999999999999999999999999999998 5788888999999999999
Q ss_pred HHHHhhhccc-cC--------CCC--------Cccccc----ccccCCCC--Cccch-hHHHHHHHHHHHHHhhhchhhh
Q 007580 152 GITLCATMKV-FM--------PNQ--------DNCDRI----SQLLGSCE--PAKSW-QMLYLYTVLYITGFGAAGIRPC 207 (597)
Q Consensus 152 ~~~~~~~~~~-~~--------~~~--------~~c~~~----~~~~~~~~--~~~~~-~~~~l~~~~~l~g~g~g~~~~~ 207 (597)
++++...+.. .. +.+ +.|++. ++..+.|. ..... -+.+++++.++.|+|...+++.
T Consensus 178 l~alPHf~~~~y~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~llff~~q~l~GIG~Tpi~tl 257 (735)
T KOG3626|consen 178 LFALPHFFSGPYEYELEVIKQSVENPSSSLSFCCCNKSTNLCRPSPENSKREKESTSYPFLLFFLGQLLLGIGATPIFTL 257 (735)
T ss_pred HHhChHHhcCcchhhhhhhhccccCCccccchhhccCCccccCCCCCcccccccCCchhHHHHHHHHHHhhcCCCCCccC
Confidence 9998643320 00 000 001100 01112232 22222 2347788999999999999999
Q ss_pred hhhhhhccCCCCCchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhc------------------c-chHHHHHHHHHH
Q 007580 208 VSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQME------------------H-GWGSAFGALAIA 268 (597)
Q Consensus 208 ~~~~~ad~~~~~~~~~~~~R~~~~~~~~~~~~lg~~l~p~i~~~i~~~------------------~-gw~~~f~i~~~~ 268 (597)
..+++=|-...++ -...+++.+....+|+++|.++++++... . .|+.+|.+.+.+
T Consensus 258 GisYiDDnvk~~~------SplYlgi~~~~~~lGPaiGfllgS~~l~lYvD~~~~~~~it~~DPrWIGAWWlGFLi~g~~ 331 (735)
T KOG3626|consen 258 GISYIDDNVKKKN------SPLYLGILYSMAILGPAIGFLLGSFCLKLYVDFGLSPIGITPTDPRWIGAWWLGFLICGAL 331 (735)
T ss_pred CCccccccccccC------CcHHHHHHHHHHHhhhHHHHHHHHHHHHeeeccccCCCCCCCCCcchhhHHHHHHHHHHHH
Confidence 9999988888887 78899999999999999999999876421 2 288899998888
Q ss_pred HHHHHHHHHHhcCcccc
Q 007580 269 MGISNMLFFIGTPLYRH 285 (597)
Q Consensus 269 ~~~~~~~~~~~~~~~~~ 285 (597)
.++..+.++++.+.+++
T Consensus 332 ~~~~a~p~f~fPk~lp~ 348 (735)
T KOG3626|consen 332 LLFSAVPLFFFPKELPK 348 (735)
T ss_pred HHHHHHHHHhCcccCcc
Confidence 87777776666655544
No 191
>COG2270 Permeases of the major facilitator superfamily [General function prediction only]
Probab=98.96 E-value=1.5e-08 Score=104.47 Aligned_cols=172 Identities=13% Similarity=0.086 Sum_probs=138.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHhhhhHHHhhcccchHHHHHHHHHHHHHH
Q 007580 70 AALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAG 149 (597)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~lsD~~~GR~~~~~~~~~l~~~g 149 (597)
.+...++..++.+=+-..+......|...++|++..+...+...-.+..+++.+++|+|.|| +|-|+++.++.+++.+.
T Consensus 253 ~i~~FLiA~~~~~DGv~til~~~~~fg~~~~gls~~~lll~g~~~~vvA~lg~ii~g~Ld~r-fg~k~vl~~~lvi~~~~ 331 (438)
T COG2270 253 NLVLFLIARFFYIDGVNTILAMGGVFGAADLGLSSTELLLIGIALSVVAALGAIIAGFLDER-FGSKPVLMIGLVILSIA 331 (438)
T ss_pred chHHHHHHHHHHHhhHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCCceeehHHHHHHHHH
Confidence 45555556666666666777778899999999999999988888899999999999999999 89999999998887765
Q ss_pred HHHHHHhhhccccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhhchhhhhhhhhhccCCCCCchhhhhhhh
Q 007580 150 LTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDR 229 (597)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~R~~ 229 (597)
.+..-+. ....-+.+.-.+.|+..|+.++..-++.++..|+++ -++
T Consensus 332 ~~~~~~~----------------------------~~~~~f~i~gll~g~s~G~~qA~SRSy~~~lvp~~k------~~~ 377 (438)
T COG2270 332 ALYLIFL----------------------------EGELDFWILGLLVGTSLGGAQASSRSYLARLVPKGK------EGR 377 (438)
T ss_pred HHHHHHc----------------------------cccHHHHHHHHHHHHhcchHHHHHHHHHHHhCCCcc------ccc
Confidence 5544433 122334455568899999999999999999999999 899
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhccc-hHHHHHHHHHHHHHHHHHH
Q 007580 230 FFNFFYLSVTVGAIVAFTLVVYIQMEHG-WGSAFGALAIAMGISNMLF 276 (597)
Q Consensus 230 ~~~~~~~~~~lg~~l~p~i~~~i~~~~g-w~~~f~i~~~~~~~~~~~~ 276 (597)
+|++|++....+..+||.+.+.+.+.+| -|.++....++.+++++++
T Consensus 378 fFglyaltgra~S~~gp~lv~v~t~iTg~~r~g~~~i~vll~iGl~~L 425 (438)
T COG2270 378 FFGLYALTGRAASFLGPFLVAVITQITGSSRAGVLSIIVLLLIGLLLL 425 (438)
T ss_pred eeehhhhhhhHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHhhHhhE
Confidence 9999999999999999999999887654 6777766555555555543
No 192
>PRK15034 nitrate/nitrite transport protein NarU; Provisional
Probab=98.94 E-value=6.7e-08 Score=103.81 Aligned_cols=184 Identities=13% Similarity=-0.004 Sum_probs=122.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHhhhhHHHhhcccchHHHHHHHHHHHHHH
Q 007580 70 AALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAG 149 (597)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~lsD~~~GR~~~~~~~~~l~~~g 149 (597)
..|.+.+..++..-.+.++..++|.|+++.+. ............+...+..+++|+|||| +||++++.++.++..++
T Consensus 253 ~~Wllslly~~tFG~fvg~s~~lp~~~~~~~~--~~~~l~~~~l~~l~~~l~rplgG~LADR-iG~~~vl~~~~i~~~i~ 329 (462)
T PRK15034 253 HLWLLSLLYLATFGSFIGFSAGFAMLAKTQFP--DVNILRLAFFGPFIGAIARSVGGAISDK-FGGVRVTLINFIFMAIF 329 (462)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHcC--hHHHHHHHHHHHHHHHHHHHhhHHHHHh-cCchHHHHHHHHHHHHH
Confidence 35777777777777777787789999887663 3333333444567888899999999999 89999999888777666
Q ss_pred HHHHHHhhhccccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhhchhhhhhhhhhccCCCCCc--------
Q 007580 150 LTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSK-------- 221 (597)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~-------- 221 (597)
...+.+.. |. ....+...+.+..+...++.|.-...+..++.+.||++..
T Consensus 330 ~~~~~l~l------p~----------------~~~~~~~~~~~~~~~l~~~~G~gngsvfk~ip~~f~~~~~~~~~~~~~ 387 (462)
T PRK15034 330 SALLFLTL------PG----------------TGSGNFIAFYAVFMGLFLTAGLGSGSTFQMIAVIFRQITIYRVKMKGG 387 (462)
T ss_pred HHHHHHHh------cc----------------ccccHHHHHHHHHHHHHHHhcccchHHHHhhHHHHhhhhhhccccccc
Confidence 54433321 10 0013455566655555566666666677777777774100
Q ss_pred -------hhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhcc-chHHHHHHHHHHHHHHHHHHHH
Q 007580 222 -------DYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEH-GWGSAFGALAIAMGISNMLFFI 278 (597)
Q Consensus 222 -------~~~~~R~~~~~~~~~~~~lg~~l~p~i~~~i~~~~-gw~~~f~i~~~~~~~~~~~~~~ 278 (597)
..++.-+...++......+|+.+-|.+-|+..+.. ++...|++..+..+++.++.+.
T Consensus 388 ~~~~~~~~~~~~~g~v~G~v~a~G~~Ggf~~p~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~w~ 452 (462)
T PRK15034 388 SDEQAQREAVTETAAALGFISAIGAVGGFFIPQAFGMSLNMTGSPVGAMKVFLIFYIVCVLLTWL 452 (462)
T ss_pred chhHHhhHHHHHHHHHHHHHHHHHHcccchhhHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHH
Confidence 01112567777888888898989998777766654 5888888888777666655544
No 193
>PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional
Probab=98.88 E-value=4.9e-08 Score=118.32 Aligned_cols=184 Identities=6% Similarity=-0.173 Sum_probs=130.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHhhhhHHHhhcccchHHHHHHHHHHHHHH
Q 007580 70 AALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAG 149 (597)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~lsD~~~GR~~~~~~~~~l~~~g 149 (597)
.++...+..++..+..+++..++|.|+.+.+|.+...++++.+.+.++..++.++.|+++|+ .++++.+..+.++..++
T Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~g~~~~~~g~~~~~~~~g~~ig~~~~g~l~~~-~~~~~~~~~~~~~~~~~ 304 (1140)
T PRK06814 226 RIWLAILGISWFWLVGAVVLSQLPLLAKETLGGDENVATLFLAVFSVGVAVGSFLASKLSEG-RITLLYVPIGALLMGLF 304 (1140)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHHHhCC-ceeeeeehHHHHHHHHH
Confidence 34455555555566667777889999999999999999999999999999999999999998 57666666555555544
Q ss_pred HHHHHHhhhccccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhhchhhhhhhhhhccCCCCCchhhhhhhh
Q 007580 150 LTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDR 229 (597)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~R~~ 229 (597)
.+.+.+.... ...+..+.+. ..+-. ...+.+.++++.++.|++.+...+...+++.+.+|++. |++
T Consensus 305 ~~~l~~~~~~-~~~~~~~~~~------~~~~~-~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~------~G~ 370 (1140)
T PRK06814 305 GLDLAFASSS-VPAEPAQLKS------ILVFL-SKRHGWRILIDLFGLAAAGGLYIVPLFAALQAWANPAH------RAR 370 (1140)
T ss_pred HHHHHhcccc-cccccccccc------hhhhh-cccccHHHHHHHHHHHHHHHHhHHHHHHHHHhhCCccc------cee
Confidence 4433332000 0000000000 00000 00234566777888999999999999999999999999 999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhh-ccchHHHHHHHHHH
Q 007580 230 FFNFFYLSVTVGAIVAFTLVVYIQM-EHGWGSAFGALAIA 268 (597)
Q Consensus 230 ~~~~~~~~~~lg~~l~p~i~~~i~~-~~gw~~~f~i~~~~ 268 (597)
.+++++....+|..+++++.+.+.+ ..++.+.|++.+++
T Consensus 371 v~g~~~~~~~~~~~ig~~~~g~l~~~~~~~~~~~~~~~~~ 410 (1140)
T PRK06814 371 VIAANNVLNAAFMVAGTIILALLQALGFSIPWIILFIALA 410 (1140)
T ss_pred eeHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHH
Confidence 9999999999999999999999874 45667666655543
No 194
>PRK09848 glucuronide transporter; Provisional
Probab=98.87 E-value=3.8e-08 Score=106.80 Aligned_cols=162 Identities=14% Similarity=0.122 Sum_probs=120.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHhhhhHHHhhcccchHHHHHHHHHHHHHH
Q 007580 70 AALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAG 149 (597)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~lsD~~~GR~~~~~~~~~l~~~g 149 (597)
.++...+..++...+++......+.|+++.+|.+....++......++..++.++.++++|| +|+|+++.++.++..++
T Consensus 229 ~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~l~~r-~g~~~~~~~g~~~~~i~ 307 (448)
T PRK09848 229 PLFMLCIGALCVLISTFAVSASSLFYVRYVLNDTGLFTVLVLVQNLVGTVASAPLVPGMVAR-IGKKNTFLIGALLGTCG 307 (448)
T ss_pred hHHHHHHHHHHHHHHHHHHhhhheeeEeeecCChHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCcHHHHHHHHHHHHHH
Confidence 34555555666666666666666777777888776655555554456778889999999999 89999999999888888
Q ss_pred HHHHHHhhhccccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhhchhhhhhhhhhccCCCCCchh-hhhhh
Q 007580 150 LTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDY-KTHLD 228 (597)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~-~~~R~ 228 (597)
.+++.+.. . .+.+.+++..++.|+|.+...+...++.+|..|.++.+. ...++
T Consensus 308 ~~~~~~~~-------~-------------------~~~~~~~~~~~l~g~G~~~~~~~~~al~~~~~~~~~~~~g~r~~G 361 (448)
T PRK09848 308 YLLFFWVS-------V-------------------WSLPVALVALAIASIGQGVTMTVMWALEADTVEYGEYLTGVRIEG 361 (448)
T ss_pred HHHHHHcC-------c-------------------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHhhCccchh
Confidence 77766431 1 345566677788999999999999999999988654211 11258
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhhccch
Q 007580 229 RFFNFFYLSVTVGAIVAFTLVVYIQMEHGW 258 (597)
Q Consensus 229 ~~~~~~~~~~~lg~~l~p~i~~~i~~~~gw 258 (597)
..++.+++...+|..+|+.+.+.+.+..|+
T Consensus 362 ~~~~~~~~~~klg~aig~~i~g~~l~~~G~ 391 (448)
T PRK09848 362 LTYSLFSFTRKCGQAIGGSIPAFILGLSGY 391 (448)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 888999999999999999999887665554
No 195
>TIGR00903 2A0129 major facilitator 4 family protein. This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix.
Probab=98.87 E-value=1.5e-07 Score=99.36 Aligned_cols=165 Identities=10% Similarity=-0.028 Sum_probs=111.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHhhhhHHHhhcccchH---HHHHH-HHHH
Q 007580 70 AALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRY---WTIAI-FTTI 145 (597)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~lsD~~~GR~---~~~~~-~~~l 145 (597)
.++.+.+..++....+|++..|+|.|+++ .|++.. ++.......+... +..++++|| +.|| +.... ..++
T Consensus 193 ~~~~~~~~~~~~~~~~~~~~~wlp~~L~~-~g~s~~-~~~~~~l~~~~g~---~g~~~~~d~-~~r~~~r~~~~~~~~~~ 266 (368)
T TIGR00903 193 DLWIIGAILGFGVALFDNLAIWLEAALRP-AGLEDI-AGDAVALAILAGL---IGVAVIPDR-VARAGLRSIYIRAAALL 266 (368)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHH-CCCChH-HHHHHHHHHHHHH---HHHHHhhHH-hhhhhhHHHHHHHHHHH
Confidence 45777788888899999999999999964 678764 4544444444433 445888888 5543 33332 3333
Q ss_pred HHHHHHHHHHhhhccccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhhchhhhhhhhhhccCCCCCchhhh
Q 007580 146 YLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKT 225 (597)
Q Consensus 146 ~~~g~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~ 225 (597)
..+.....+.. .+....++...+.+++.....+...++.+|.+|++.
T Consensus 267 ~a~~~~~~~~~----------------------------~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~----- 313 (368)
T TIGR00903 267 IAAFFLALAFE----------------------------LNRLALFAFIGIAGLLMLPAYAIIMDWIGKFCDKEL----- 313 (368)
T ss_pred HHHHHHHHHHc----------------------------cccHHHHHHHHHHHHhhhhhHHHHHHHHHHhcchhh-----
Confidence 23222222222 112233444456667777777888899999999999
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHH
Q 007580 226 HLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLF 276 (597)
Q Consensus 226 ~R~~~~~~~~~~~~lg~~l~p~i~~~i~~~~gw~~~f~i~~~~~~~~~~~~ 276 (597)
|+++.++.+...++|+..+|.+.+.+.. |-+..|.+.++..+++.+..
T Consensus 314 -rgt~~G~~~~~g~~~~~~~~~~~~~~~~--~~~~~f~~~~~~~~i~~~~~ 361 (368)
T TIGR00903 314 -HGKAAGAIGFTSRAISVALALAAMLFIS--SAEAYFTFLAILITIAFAIA 361 (368)
T ss_pred -cCcccchhhHHHHHHHHHHHHHHHHHhc--CHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999988773 66667776666555554443
No 196
>TIGR00898 2A0119 cation transport protein.
Probab=98.86 E-value=5.1e-08 Score=107.44 Aligned_cols=129 Identities=15% Similarity=0.061 Sum_probs=97.1
Q ss_pred HHHHHHHHHhhhhHHHhhcccchHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCcccccccccCCCCCccchhHHHHHH
Q 007580 113 NFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYT 192 (597)
Q Consensus 113 ~~~~~~~~~~~~~G~lsD~~~GR~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~l~~ 192 (597)
...+...++.+++++++|| +|||+++.++.++..++.+++.+... ......++
T Consensus 363 ~~~~~~i~~~~~~~~l~dr-~grr~~~~~~~~~~~~~~l~~~~~~~--------------------------~~~~~~~~ 415 (505)
T TIGR00898 363 ISGLVELPAKLITLLLIDR-LGRRYTMAASLLLAGVALLLLLFVPV--------------------------DLYFLRTA 415 (505)
T ss_pred HHHHHHHHHHHHHHHHHHH-hCCHHHHHHHHHHHHHHHHHHHHcCC--------------------------CchHHHHH
Confidence 3456667788899999999 89999999998887777766655411 11133444
Q ss_pred HHHHHHHhhhchhhhhhhhhhccCCCCCchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHH
Q 007580 193 VLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGIS 272 (597)
Q Consensus 193 ~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~R~~~~~~~~~~~~lg~~l~p~i~~~i~~~~gw~~~f~i~~~~~~~~ 272 (597)
..++.+++.++..+....+.+|.+|++. |++++++.+....+|..++|.+.+ +. ..++..++++.+...+++
T Consensus 416 ~~~~~~~~~~~~~~~~~~~~~e~~p~~~------r~~~~g~~~~~~~ig~~i~p~i~~-~~-~~~~~~~~~~~~~~~~~~ 487 (505)
T TIGR00898 416 LAVLGKFGITSAFQMVYLYTAELYPTVV------RNLGVGVCSTMARVGSIISPFLVY-LG-EKWLFLPLVLFGGLALLA 487 (505)
T ss_pred HHHHHHHHHHHHHHHHHHHhcccccHHH------HhhhHhHHHHHHHHHHHHHhHHHH-HH-HHHHhhHHHHHHHHHHHH
Confidence 4556667777778888999999999999 999999999999999999999988 43 356677777766665555
Q ss_pred HHHH
Q 007580 273 NMLF 276 (597)
Q Consensus 273 ~~~~ 276 (597)
.++.
T Consensus 488 ~~~~ 491 (505)
T TIGR00898 488 GILT 491 (505)
T ss_pred HHHH
Confidence 4443
No 197
>TIGR00901 2A0125 AmpG-related permease.
Probab=98.82 E-value=1.1e-07 Score=99.66 Aligned_cols=145 Identities=10% Similarity=0.037 Sum_probs=109.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHH-HHHHHHhhhhHHHhhcccchHHHHHHHHHHHHH
Q 007580 70 AALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFL-GISQASSVLGGFLADAYLGRYWTIAIFTTIYLA 148 (597)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~-~~~~~~~~~~G~lsD~~~GR~~~~~~~~~l~~~ 148 (597)
..+.+++..++..++++....+++.|+.+ +|++..+.+.+..... ++..++.+++|+++|| +|||+.+.++.++..+
T Consensus 210 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~g~~~~~~g~~~~~~~~~~~~~g~~~~g~l~~r-~g~~~~l~~~~~~~~~ 287 (356)
T TIGR00901 210 QALLLLLLIVLYKLGDSAATVLTTLFLLD-MGFSKEEIALVAKINGLLGAILGGLIGGIIMQP-LNILYALLLFGIVQAL 287 (356)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCCCHHHHHHHhHHHHHHHHHHHHHHHHHHHhh-hhHHHHHHHHHHHHHH
Confidence 35555555666778888888999999987 9999999988777655 5678899999999999 8999999888887776
Q ss_pred HHHHHHHhhhccccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhhchhhhhhhhhhccCCCCCchhhhhhh
Q 007580 149 GLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLD 228 (597)
Q Consensus 149 g~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~R~ 228 (597)
+..+..+...... +-+ -+..+...++...++.+++.+...+...+++.+.+|++. |+
T Consensus 288 ~~~~~~~~~~~~~----------------~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~------~g 344 (356)
T TIGR00901 288 TNAGFVWLASNGH----------------HDG-ITFPHLLMLFLTITLEAVTGGLGTVAFVAFLSKLSNPKF------GA 344 (356)
T ss_pred HHHHHHHHHhcCc----------------ccc-cccchHHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCCc------cH
Confidence 6555443211000 000 000133556677788899999999999999999999999 99
Q ss_pred hHHHHHHHHHH
Q 007580 229 RFFNFFYLSVT 239 (597)
Q Consensus 229 ~~~~~~~~~~~ 239 (597)
+.+++++...+
T Consensus 345 ~~~g~~~~~~~ 355 (356)
T TIGR00901 345 TQMALLSSLSA 355 (356)
T ss_pred HHHHHHHHHHh
Confidence 99999877654
No 198
>PRK11195 lysophospholipid transporter LplT; Provisional
Probab=98.82 E-value=3.4e-07 Score=97.63 Aligned_cols=158 Identities=6% Similarity=-0.060 Sum_probs=113.9
Q ss_pred HHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHhhhhHHHhhcccchHHHHHHHHHHHHHHHHHHHHhhhccccCC
Q 007580 85 YFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMP 164 (597)
Q Consensus 85 ~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~lsD~~~GR~~~~~~~~~l~~~g~~~~~~~~~~~~~~~ 164 (597)
.......++.|+.+.+|.++.+.+.....+.++..++.++.+++.|| +++++++..+.++ .+....+...
T Consensus 221 ~~~~~~~~~~~~~~~lg~s~~~~G~~~~~~~~g~i~g~~~~~~l~~~-~~~~~~~~~g~~~-~~~~~~~~~~-------- 290 (393)
T PRK11195 221 GATLRFLVLAWAPVALGITLNQPAYLQAVVAIGIAVGAGAAARLVTL-ETVLRVLPAGILM-GLVVLLMALQ-------- 290 (393)
T ss_pred HHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHHHHHHHHHHhcC-CcccchHHHHHHH-HHHHHHHHHH--------
Confidence 34444556778888899999999999999999999999999999998 7999888777432 2222222222
Q ss_pred CCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhhchhhhhhhhhhccCCCCCchhhhhhhhHHHHHHHHHHHHHHH
Q 007580 165 NQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIV 244 (597)
Q Consensus 165 ~~~~c~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~R~~~~~~~~~~~~lg~~l 244 (597)
.+....++..++.|++.+...+...+.+.+..|++. ++++.+++.++..++|..+
T Consensus 291 --------------------~~~~~~~~~~~~~G~~~g~~~~~~~~~~q~~~~~~~-----~~g~~~a~~~~~~~~~~~~ 345 (393)
T PRK11195 291 --------------------HSLLPAYPLLILIGALGGFFVVPMNALLQHRGHVLV-----GAGHSIAVQNFNENLAMLL 345 (393)
T ss_pred --------------------hHHHHHHHHHHHHHHhhhhhhhhHHHHHHhhCcccc-----cchhHHHHHhHHHHHHHHH
Confidence 344555667778899988888888888877644331 1688999999999999999
Q ss_pred HHHHHHHhhhccchHHHHHHHHHHHHHHHHHHHH
Q 007580 245 AFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFI 278 (597)
Q Consensus 245 ~p~i~~~i~~~~gw~~~f~i~~~~~~~~~~~~~~ 278 (597)
+..+.+.+ +..|-++.+.+.+...++...+.+.
T Consensus 346 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 378 (393)
T PRK11195 346 MLGLYSLL-VKLGVPVVAVIVGFGLLVALAMALL 378 (393)
T ss_pred HHHHHHHH-HHcCCCHHHHHHHHHHHHHHHHHHH
Confidence 99998866 4566666665555444444444333
No 199
>COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism]
Probab=98.80 E-value=4.6e-07 Score=91.84 Aligned_cols=166 Identities=14% Similarity=0.096 Sum_probs=130.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHhhhhHHHhhcccchHHHHHHHHHHHHHH
Q 007580 70 AALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAG 149 (597)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~lsD~~~GR~~~~~~~~~l~~~g 149 (597)
..|.+.+..-+.++.+|.+..|+|.++. +.|+|..++++.++...+......++.-++++|.--+|+..+...+.+.+|
T Consensus 209 ~aW~vtLfmGlqS~~~Y~~~~WLP~ili-~~G~sa~~aG~llsl~~l~~~~~~ll~P~la~R~~n~r~~~~~~~~~~l~G 287 (395)
T COG2807 209 LAWQVTLFMGLQSLLYYIVIGWLPAILI-DRGLSAAEAGSLLSLMQLAQLPTALLIPLLARRSKNQRPLVVLALLLMLVG 287 (395)
T ss_pred hhHHHHHHHHhhHHHHHHHHHHHHHHHH-HcCCCHHHhhhHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHH
Confidence 4566666667788899999999999886 579999999999999999999999999999998556888888888888888
Q ss_pred HHHHHHhhhccccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhhchhhhhhhhhhccCCCCCchhhhhhhh
Q 007580 150 LTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDR 229 (597)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~R~~ 229 (597)
...+.+. |. ++. .+. .+++|+|.|+.++....++.+..++.+. -++
T Consensus 288 ~~G~~~~-------P~-------------------~~~-~lw--~~llG~G~G~~F~laL~li~~rs~~a~~-----Aa~ 333 (395)
T COG2807 288 LVGLLLA-------PG-------------------QLP-ILW--ALLLGLGQGGAFPLALTLILLRSSDAAI-----AAA 333 (395)
T ss_pred HHHHHHh-------hh-------------------hHH-HHH--HHHHhCccchHHHHHHHHHHhhcCChHH-----HHH
Confidence 8888766 21 222 222 4789999999999999999998865441 345
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhcc-chHHHHHHHHHHHH
Q 007580 230 FFNFFYLSVTVGAIVAFTLVVYIQMEH-GWGSAFGALAIAMG 270 (597)
Q Consensus 230 ~~~~~~~~~~lg~~l~p~i~~~i~~~~-gw~~~f~i~~~~~~ 270 (597)
..++-+-...+-+..||.+.|++.|.. +|+......+...+
T Consensus 334 LSgmaQg~GYllAa~GP~l~G~lhDa~gsw~~~~~~l~~~~i 375 (395)
T COG2807 334 LSGMAQGVGYLLAAFGPWLFGFLHDATGSWSAPLVLLALATL 375 (395)
T ss_pred HHHHhhhhhHHHHhhhhhhHhHHHHhcCChHHHHHHHHHHHH
Confidence 555556666677888999999999975 58877665554433
No 200
>PF03137 OATP: Organic Anion Transporter Polypeptide (OATP) family; InterPro: IPR004156 This family consists of several eukaryotic Organic-Anion-Transporting Polypeptides (OATPs). Several have been identified mostly in human and rat. Different OATPs vary in tissue distribution and substrate specificity. Since the numbering of different OATPs in particular species was based originally on the order of discovery, similarly numbered OATPs in humans and rats did not necessarily correspond in function, tissue distribution and substrate specificity (in spite of the name, some OATPs also transport organic cations and neutral molecules) so a scheme of using digits for rat OATPs and letters for human ones was introduced []. Prostaglandin transporter (PGT) proteins are also considered to be OATP family members. In addition, the methotrexate transporter OATK is closely related to OATPs. This family also includes several predicted proteins from Caenorhabditis elegans and Drosophila melanogaster. This similarity was not previously noted. Note: Members of this family are described (in the UniProtKB/Swiss-Prot database) as belonging to the SLC21 family of transporters.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 3MRR_P.
Probab=98.80 E-value=6e-10 Score=122.51 Aligned_cols=205 Identities=14% Similarity=0.086 Sum_probs=3.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHhhhhHHHhhcccchHHHHHHHHHHHHHHHHHH
Q 007580 74 IFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGI 153 (597)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~lsD~~~GR~~~~~~~~~l~~~g~~~~ 153 (597)
+++..+++ +..+++......-+.+.|+++++++|++.+.|-++..+..++..++.+| .-|-|.+.++.++..+|.+++
T Consensus 8 ~~~~~~~q-~~~~g~~~~~lttiErRF~l~S~~~G~i~s~~di~~~~~~~~vsy~g~~-~hrprwig~g~~~~~~g~~l~ 85 (539)
T PF03137_consen 8 LCLLGLFQ-MMVSGYVNSSLTTIERRFGLSSSQSGLISSSYDIGSLVVVLFVSYFGGR-GHRPRWIGIGALLMGLGSLLF 85 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHH-HHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhh-cCCcceeeecHHHHHHHHHHH
Confidence 34444455 6667777777888999999999999999999999999999999999998 578888889999999999999
Q ss_pred HHhhhccc-cCCC------------CCccc-----ccccccCC---CCCccch-hHHHHHHHHHHHHHhhhchhhhhhhh
Q 007580 154 TLCATMKV-FMPN------------QDNCD-----RISQLLGS---CEPAKSW-QMLYLYTVLYITGFGAAGIRPCVSSF 211 (597)
Q Consensus 154 ~~~~~~~~-~~~~------------~~~c~-----~~~~~~~~---~~~~~~~-~~~~l~~~~~l~g~g~g~~~~~~~~~ 211 (597)
++...... ..+. .+.|. ..+.+... +...... -+..++++.++.|+|....++...++
T Consensus 86 ~lPhf~~~~y~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~gq~l~GiG~~pl~tLG~tY 165 (539)
T PF03137_consen 86 ALPHFLSGPYSYEEASNSNGNSSISSNLCDSSSSSQASSDCQDCCSSSSSSLSGYFYVFILGQLLIGIGATPLYTLGITY 165 (539)
T ss_dssp ------------------------------------------------------------------SSS-----------
T ss_pred hccHhhcCCCccccccccccccccccccccccccccccCccccccccccccchHHHHHHHHHHHHHhccccCCccceeee
Confidence 98754421 1110 01120 00000001 1122222 24678899999999999999999999
Q ss_pred hhccCCCCCchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhc---------------------cc-hHHHHHHHHHHH
Q 007580 212 GADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQME---------------------HG-WGSAFGALAIAM 269 (597)
Q Consensus 212 ~ad~~~~~~~~~~~~R~~~~~~~~~~~~lg~~l~p~i~~~i~~~---------------------~g-w~~~f~i~~~~~ 269 (597)
+=|..++++ -...+++++....+|+++|.++++.+... .| |+.+|.+.+++.
T Consensus 166 iDDnv~~~~------splYiGi~~~~~~lGPa~Gf~lg~~~L~~yvD~~~~~~~~~~i~p~dp~WvGAWWLGfli~g~~~ 239 (539)
T PF03137_consen 166 IDDNVSKKN------SPLYIGILYAMSILGPALGFLLGSFCLRIYVDFPKVPPDGVGITPSDPRWVGAWWLGFLICGILL 239 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ecccccccc------CccchhhhhHHhhccHHHHHHHHHHHHhceeCCccccccCCCCCCCCccHHHHHHHHHHHHHHHH
Confidence 999999998 78899999999999999999998865321 23 888888888777
Q ss_pred HHHHHHHHHhcCccccc
Q 007580 270 GISNMLFFIGTPLYRHR 286 (597)
Q Consensus 270 ~~~~~~~~~~~~~~~~~ 286 (597)
++..+.++.+.|++++.
T Consensus 240 ~l~aipl~~FPk~lp~~ 256 (539)
T PF03137_consen 240 FLSAIPLFFFPKKLPGT 256 (539)
T ss_dssp -----------------
T ss_pred HHHHHHHHcCCccCCCc
Confidence 66665555555555443
No 201
>KOG0253 consensus Synaptic vesicle transporter SV2 (major facilitator superfamily) [General function prediction only]
Probab=98.78 E-value=1.1e-07 Score=95.92 Aligned_cols=172 Identities=11% Similarity=0.091 Sum_probs=113.1
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHH-----------------HHHhhCCChHHH--HHHHHHHHHHHHHHhhhhHH
Q 007580 67 GWIAALFIFGNEMAERMAYFGLSVNMVTF-----------------MFYVMHKSFADS--SNAVNNFLGISQASSVLGGF 127 (597)
Q Consensus 67 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~y-----------------l~~~~~~s~~~a--~~~~~~~~~~~~~~~~~~G~ 127 (597)
..+..++++.+.|.+++.+|+..-..... +.-..+-..... -.-+.+-.+.-..|.++.++
T Consensus 324 lrkttlllw~iwfgnafsyyg~VLlttelfqsgd~c~~~~r~~p~e~e~~~~c~~s~~~dYrdllitslaefPGlLIt~~ 403 (528)
T KOG0253|consen 324 LRKTTLLLWRIWFGNAFSYYGSVLLTTELFQSGDACPLYNRFLPTELETRANCPLSVAKDYRDLLITSLAEFPGLLITGV 403 (528)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhccCccccchhcchhHHHhhhcCCccchhHHHHHHHHHHhhCCchhHHHH
Confidence 34456777788889999999876432211 111111111111 11222345677889999999
Q ss_pred HhhcccchHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhhchhhh
Q 007580 128 LADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPC 207 (597)
Q Consensus 128 lsD~~~GR~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~ 207 (597)
+.|| +|||+++..+.+++.+.+.++..+.. ++ .-..+++.+|+++ .+...+
T Consensus 404 iver-lGRKkTMal~l~~f~iflfll~~c~~-----------------------rn-~~tvllf~arafi----sg~fqv 454 (528)
T KOG0253|consen 404 IVER-LGRKKTMALSLILFGIFLFLLTTCKT-----------------------RN-AYTVLLFTARAFI----SGAFQV 454 (528)
T ss_pred HHHH-hcchhHHHHHHHHHHHHHHHHHHhcC-----------------------cc-hhHHHHHHHHHHH----hchheE
Confidence 9999 89999999999999988888776522 11 1224555666655 444556
Q ss_pred hhhhhhccCCCCCchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHH
Q 007580 208 VSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNML 275 (597)
Q Consensus 208 ~~~~~ad~~~~~~~~~~~~R~~~~~~~~~~~~lg~~l~p~i~~~i~~~~gw~~~f~i~~~~~~~~~~~ 275 (597)
...+..|.+|... |+.+.|.-.....+|+++.|.++ +...-+-..+..+...+.+++.+.
T Consensus 455 aYvYtPEVyPTav------RatgvGtcSsmaRIggI~~p~iA--~~~e~s~sl~i~vy~~~~ilagIa 514 (528)
T KOG0253|consen 455 AYVYTPEVYPTAV------RATGVGTCSSMARIGGIFSPVIA--MRAELSTSLPIFVYGALFILAGIA 514 (528)
T ss_pred EEEecCcccchhh------hhcchhhhhhHHhhhhhhhhHHH--HHhccceeehHHHHHHHHHHHHHH
Confidence 7888999999999 99999999999999999999998 333223333444444444444433
No 202
>PF13347 MFS_2: MFS/sugar transport protein
Probab=98.78 E-value=2.8e-07 Score=99.37 Aligned_cols=161 Identities=14% Similarity=0.099 Sum_probs=130.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHhhhhHHHhhcccchHHHHHHHHHHHHHH
Q 007580 70 AALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAG 149 (597)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~lsD~~~GR~~~~~~~~~l~~~g 149 (597)
....+++..++..++........+.|.+..+|.+ ...+.......++..++.++.++++|| +|+|+++..+.++..++
T Consensus 226 ~~~~l~~~~~~~~~~~~~~~~~~~y~~~~vl~~~-~~~~~~~~~~~~~~~v~~~~~~~l~~r-~gk~~~~~~~~~~~~~~ 303 (428)
T PF13347_consen 226 PFRILLLAFFLQWLAFALMNTFLPYYFTYVLGNE-GLISIFMLIFFVASIVGSPLWGRLSKR-FGKKKVYIIGLLLAALG 303 (428)
T ss_pred hHHHHHHHHHHHHhhhhhhhhHHHHHHHHHhcCc-hhhHHHHHHHHHHHHHHHHHHHHHHHH-ccceeehhhhHHHHHHH
Confidence 4566677777777777777777777788778877 456677778889999999999999999 89999999999999998
Q ss_pred HHHHHHhhhccccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhhchhhhhhhhhhccCCCCCch-hhhhhh
Q 007580 150 LTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKD-YKTHLD 228 (597)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~-~~~~R~ 228 (597)
.++..+... .+...+++...+.|++.+...+...++++|..+.++.+ .++..+
T Consensus 304 ~~~~~~~~~--------------------------~~~~~~~i~~~l~gi~~~~~~~~~~a~~ad~id~~e~~tg~r~~g 357 (428)
T PF13347_consen 304 FLLLFFLGP--------------------------GSPWLVLILFILAGIGYGAFFVIPWAMLADVIDYDEWKTGRRREG 357 (428)
T ss_pred HHHHHHHHh--------------------------hhHHHHHHHHHHhHhhhcccccccccccccchhhHHHhcCCCchH
Confidence 888877621 36778888889999999999999999999999865422 112257
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhhccch
Q 007580 229 RFFNFFYLSVTVGAIVAFTLVVYIQMEHGW 258 (597)
Q Consensus 229 ~~~~~~~~~~~lg~~l~p~i~~~i~~~~gw 258 (597)
..++.+.+...++..+++.+.+.+.+..|+
T Consensus 358 ~~~s~~~~~~k~~~~la~~i~g~~l~~~Gy 387 (428)
T PF13347_consen 358 MYFSVNSFFIKIGQGLAGAIVGLLLALVGY 387 (428)
T ss_pred HHHHhhhhhhHHHHHHHHHHHHHHHHHhCc
Confidence 888889999999999999999988665444
No 203
>PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms. These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A.
Probab=98.77 E-value=8.2e-08 Score=99.76 Aligned_cols=141 Identities=19% Similarity=0.232 Sum_probs=116.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhCCC-hHHHHHHHHHHHHHHHHHhhhhHHHhhcccchHHHHHHHHHHHHHHHHH
Q 007580 74 IFGNEMAERMAYFGLSVNMVTFMFYVMHKS-FADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTG 152 (597)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s-~~~a~~~~~~~~~~~~~~~~~~G~lsD~~~GR~~~~~~~~~l~~~g~~~ 152 (597)
++...++..+.++....+++.|+.+++|.+ ..+.+...+...+...++.++.|+++|| +|+++...+......++.+.
T Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~~~~~~~~~~~~ 289 (352)
T PF07690_consen 211 LLIAFFLFFFVFSGFSFFLPLYLQEVLGFSGPSQAGLLFSIFGIVGIIGSLLAGRLSDR-FGRRRRLLIAILLLILGALG 289 (352)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHCCHHHHCCTHHHHHHHHHHHHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHH
T ss_pred hhhhhhHHHHHHHHhhcccchhhhhccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCcHHHHHHHHHHHHHHHHH
Confidence 444444455566678888899989999999 7899999999999999999999999999 89988888877777666666
Q ss_pred HHHhhhccccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhhchhhhhhhhhhccCCCCCchhhhhhhhHHH
Q 007580 153 ITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFN 232 (597)
Q Consensus 153 ~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~R~~~~~ 232 (597)
+.+.... .+....++..++.|++.+...+...+++.|.+|+++ |++..+
T Consensus 290 ~~~~~~~-------------------------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~------~g~~~g 338 (352)
T PF07690_consen 290 LLLLPFS-------------------------SSPVWLIIALFLIGFGFGIVFPILFSLIQELVPPEY------RGTAFG 338 (352)
T ss_dssp HCCSHHH-------------------------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHCCCHTCH------HHHHHH
T ss_pred HHHHHHh-------------------------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHH------HHHHHH
Confidence 6554220 234566667788999999999999999999999999 999999
Q ss_pred HHHHHHHHHHHHHH
Q 007580 233 FFYLSVTVGAIVAF 246 (597)
Q Consensus 233 ~~~~~~~lg~~l~p 246 (597)
+++...++|..+||
T Consensus 339 ~~~~~~~~~~~igP 352 (352)
T PF07690_consen 339 LFNSIGSLGGIIGP 352 (352)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCC
Confidence 99999999999987
No 204
>KOG0569 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]
Probab=98.77 E-value=6.3e-07 Score=96.14 Aligned_cols=193 Identities=15% Similarity=0.080 Sum_probs=133.8
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHhhhhHHHhhcccchHHHHHHHHHHH
Q 007580 67 GWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIY 146 (597)
Q Consensus 67 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~lsD~~~GR~~~~~~~~~l~ 146 (597)
..+.....+...+...+...-......+.+-++-|++..++.+....-.....+..+++.++.|| +|||+.++++..+.
T Consensus 267 lR~~~~i~~~v~~~qq~sGi~ai~~Yst~i~~~aG~~~~~a~~an~~~g~v~~~~t~~~~~lid~-~gRRpLll~~~~~~ 345 (485)
T KOG0569|consen 267 LRRPLLIGIVVSFAQQFSGINAIFFYSTSIFKTAGFTPEEAQYANLGIGIVNLLSTLVSPFLIDR-LGRRPLLLISLSLM 345 (485)
T ss_pred hhHHHHHHHHHHHHHHhcCcceeHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCCcHHHHHHHHHH
Confidence 34456666666666666544334444566667789999999999999999999999999999999 89999999999988
Q ss_pred HHHHHHHHHhhhccccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhh-chhhhhhhhhhccCCCCCchhhh
Q 007580 147 LAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAA-GIRPCVSSFGADQFDERSKDYKT 225 (597)
Q Consensus 147 ~~g~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g-~~~~~~~~~~ad~~~~~~~~~~~ 225 (597)
.+..+++........... ..-....+++.++..++.+ ++.|...-+.+|+||++.
T Consensus 346 ~~~~~~~~~~~~l~~~~~-------------------~~~~y~~i~~~~~~~~~f~~G~gpi~~fi~aELf~~~~----- 401 (485)
T KOG0569|consen 346 AVALLLMSIALFLSNSFG-------------------SWLSYLCIAAIFLFIISFAIGPGPIPWFIGAELFPQSA----- 401 (485)
T ss_pred HHHHHHHHHHHHHHHHhh-------------------hHHHHHHHHHHHHHHHhhhcCCCchhHHHHHHhCCccc-----
Confidence 888887776643210000 0000122344444444433 446778888999999999
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHhcCccccc
Q 007580 226 HLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGTPLYRHR 286 (597)
Q Consensus 226 ~R~~~~~~~~~~~~lg~~l~p~i~~~i~~~~gw~~~f~i~~~~~~~~~~~~~~~~~~~~~~ 286 (597)
|..++++-.....+...+-...--.+.+..|- +.|.+..+..++..+..+...|+.+.+
T Consensus 402 -R~aa~s~~~~~~w~~~fiv~~~fp~l~~~~g~-~~filF~i~~~~~~i~~~~~lPETkgr 460 (485)
T KOG0569|consen 402 -RSAAQSVATAVNWLSNFIVGFAFPPLQNVIGP-YVFILFVIPLAIFLIYLYRYLPETKGR 460 (485)
T ss_pred -hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-hhhHHHHHHHHHHHHHHHHhCcccCCC
Confidence 99999997777766666665555666666665 566666666666666667767766554
No 205
>PRK11102 bicyclomycin/multidrug efflux system; Provisional
Probab=98.75 E-value=1.2e-06 Score=92.52 Aligned_cols=144 Identities=10% Similarity=-0.081 Sum_probs=95.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHhhhhHHHhhcccchHHHHHHHHHHHHHHHHHHH
Q 007580 75 FGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGIT 154 (597)
Q Consensus 75 ~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~lsD~~~GR~~~~~~~~~l~~~g~~~~~ 154 (597)
++..++...+.+.+..+.+.++.+.+|+++.+.+.......++..++.+++|+++|| +|||+++.++.++..+..+...
T Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r-~g~~~~~~~~~~~~~~~~~~~~ 278 (377)
T PRK11102 200 MLASGFSFAGMFSFLTAGPFVYIELNGVSPQNFGYYFALNIVFLFVMTIINSRFVRR-VGALNMLRFGLWIQFIMGIWLV 278 (377)
T ss_pred HHHHHHHHHHHHHHHHcCHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCHHHHHHHHHHHHHHHHHHHH
Confidence 333444444555566666778888899999999999999999999999999999999 8999999888776544333222
Q ss_pred HhhhccccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhhchhhhhhhhhhccCCCCCchhhhhhhhHHHHH
Q 007580 155 LCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFF 234 (597)
Q Consensus 155 ~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~R~~~~~~~ 234 (597)
...... .+...+.++..+.+.+.+...+.....+.|..| +. |++..+++
T Consensus 279 ~~~~~~------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~------~g~~~~~~ 327 (377)
T PRK11102 279 VSALLD------------------------LGFWALVVGVAAFVGCVSMISSNAMAVILDEFP-HM------AGTASSLA 327 (377)
T ss_pred HHHHHh------------------------hhHHHHHHHHHHHHHHHHHhhHHHHHHHhcccc-cc------chHHHHHH
Confidence 211000 123333444444455555555566666777766 55 77777775
Q ss_pred HHH-HHHHHHHHHHHHH
Q 007580 235 YLS-VTVGAIVAFTLVV 250 (597)
Q Consensus 235 ~~~-~~lg~~l~p~i~~ 250 (597)
+.. ..+|..+++.+++
T Consensus 328 ~~~~~~~g~~~g~~~~~ 344 (377)
T PRK11102 328 GTLRFGIGAIVGALLSL 344 (377)
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 443 4566667766554
No 206
>KOG2504 consensus Monocarboxylate transporter [Carbohydrate transport and metabolism]
Probab=98.75 E-value=1.2e-07 Score=103.51 Aligned_cols=176 Identities=14% Similarity=0.102 Sum_probs=145.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHhhhhHHHhhcccc--hHHHHHHHHHHH
Q 007580 69 IAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLG--RYWTIAIFTTIY 146 (597)
Q Consensus 69 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~lsD~~~G--R~~~~~~~~~l~ 146 (597)
+.++.+.+...+..++++.....++.|.. ..+.+..+++..++...+...++.++.|+++|+ .. ++.+..++.++.
T Consensus 298 ~~fl~~~~~~~~~~~g~~~p~~~l~~~~~-~~g~~~~~aa~l~Siigi~~i~gRi~~G~laD~-~~~~~~~~~~~~ll~~ 375 (509)
T KOG2504|consen 298 PKFLLLALSNLFAYLGFNVPFVYLPSYAK-SLGLSSNDAAFLLSIIGVSDIIGRIILGLLADK-PGIRALVLFLLTLLIA 375 (509)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHh-hcCCChhhhHHHHHHHHHhhhhhhhhhhhhcCc-cccchHHHHHHHHHHH
Confidence 46777777788888898888888888887 899999999999999999999999999999998 56 334444555555
Q ss_pred HHHHHHHHHhhhccccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhhchhhhhhhhhhccCCCCCchhhhh
Q 007580 147 LAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTH 226 (597)
Q Consensus 147 ~~g~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~ 226 (597)
.++...++++ .++..++..-.+.|++.|......+.++.|..+.++
T Consensus 376 gl~~~~~p~~----------------------------~~~~~l~~~~~~fG~~~g~~~~l~~~i~~~~~g~~~------ 421 (509)
T KOG2504|consen 376 GLARLFLPFA----------------------------TTYVGLIVFSILFGFCVGSFSSLTPVILVDLVGLEK------ 421 (509)
T ss_pred HHHHHHHHHh----------------------------ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChhh------
Confidence 5555445444 456677777788999999999888899999999999
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHhhhccc-hHHHHHHHHHHHHHHHHHHHHhc
Q 007580 227 LDRFFNFFYLSVTVGAIVAFTLVVYIQMEHG-WGSAFGALAIAMGISNMLFFIGT 280 (597)
Q Consensus 227 R~~~~~~~~~~~~lg~~l~p~i~~~i~~~~g-w~~~f~i~~~~~~~~~~~~~~~~ 280 (597)
-..++++......++..+||++.|++.|..| |...|+..++..+++..++++..
T Consensus 422 l~~a~Gl~l~~~gi~~l~gpPiag~~~d~tg~Y~~~f~~~g~~~~~s~~~~~~~~ 476 (509)
T KOG2504|consen 422 LSNAYGLLLLFQGIGALVGPPIAGLLYDITGNYDHAFYFCGLCFLLSAVLLLILR 476 (509)
T ss_pred cchHHHHHHHHhHHHHHcCcccceeeeeccCCeeeehhhcChHHHHHHHHHHHhH
Confidence 9999999999999999999999999999887 99999998888877776655543
No 207
>PRK11043 putative transporter; Provisional
Probab=98.75 E-value=1.4e-06 Score=93.02 Aligned_cols=147 Identities=12% Similarity=-0.013 Sum_probs=105.2
Q ss_pred HHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHhhhhHHHhhcccchHHHHHHHHHHHHHHHHHHHHhhhccc
Q 007580 82 RMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKV 161 (597)
Q Consensus 82 ~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~lsD~~~GR~~~~~~~~~l~~~g~~~~~~~~~~~~ 161 (597)
...++....+++.|++ ++|++..+.+.....+.++..++.++++++.|| +|||+.+....++..++.+.+.+.....
T Consensus 216 ~~~~~~~~~~~p~~~~-~~g~s~~~~g~~~~~~~~~~~~g~~~~~~l~~r-~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 292 (401)
T PRK11043 216 SAAFFAWLTGSPFILE-QMGYSPADIGLSYVPQTIAFLVGGYGCRAALQK-WGGEQLLPWLLVLFAVSVIAIWLASLLS- 292 (401)
T ss_pred HHHHHHHHHHhHHHHH-HcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCHHHHHHHHHHHHHHHHHHHHHHHHhc-
Confidence 3444555566777765 589999999988777888888999999999999 8999987666655555444333221100
Q ss_pred cCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhhchhhhhhhhhhccCCCCCchhhhhhhhHHHHHHHHHHHH
Q 007580 162 FMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVG 241 (597)
Q Consensus 162 ~~~~~~~c~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~R~~~~~~~~~~~~lg 241 (597)
+ .+...+++...+.|++.+...+...+...|..| ++ |++..++++.....+
T Consensus 293 --~--------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~------~g~~~g~~~~~~~~~ 343 (401)
T PRK11043 293 --H--------------------PSLVPLLIPFCVMAAANGAIYPIVVAQALRPFP-QA------TGKAAALQNTLQLGL 343 (401)
T ss_pred --c--------------------CcHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCc-cc------ChHHHHHHHHHHHHH
Confidence 0 233445556677888888888888888778776 45 899999998888888
Q ss_pred HHHHHHHHHHhhhccchHH
Q 007580 242 AIVAFTLVVYIQMEHGWGS 260 (597)
Q Consensus 242 ~~l~p~i~~~i~~~~gw~~ 260 (597)
+.+++.+.+.+.+......
T Consensus 344 ~~~~~~~~g~l~~~~~~~~ 362 (401)
T PRK11043 344 CFLASLLVSALISTPLLTT 362 (401)
T ss_pred HHHHHHHHHHccCCChhHH
Confidence 8888888888876543443
No 208
>PRK10473 multidrug efflux system protein MdtL; Provisional
Probab=98.74 E-value=1e-06 Score=93.68 Aligned_cols=69 Identities=13% Similarity=0.045 Sum_probs=58.5
Q ss_pred HHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHhhhhHHHhhcccchHHHHHHHHHHHHHHHHHHHHh
Q 007580 87 GLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLC 156 (597)
Q Consensus 87 ~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~lsD~~~GR~~~~~~~~~l~~~g~~~~~~~ 156 (597)
.+..+.+.|+.+++|++..+.+.....+.++..++.++.|+++|| +|||+++.++.++..++.+.+.+.
T Consensus 221 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~i~~~~~~~~l~~r-~g~~~~~~~~~~~~~~~~~~~~~~ 289 (392)
T PRK10473 221 TFVNTSPVLLMEQMGFSRGEYAIIMALTAGVSMTVSFSTPFALGI-FKPRTLMLTSQVLFLAAGITLALS 289 (392)
T ss_pred HHHHhCHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455677888899999999988888899999999999999999 899999999988888877777665
No 209
>PRK10429 melibiose:sodium symporter; Provisional
Probab=98.72 E-value=7.7e-07 Score=97.32 Aligned_cols=165 Identities=13% Similarity=-0.008 Sum_probs=115.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHhhhhHHHhhcccchHHHHHHHHHHHHH
Q 007580 69 IAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLA 148 (597)
Q Consensus 69 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~lsD~~~GR~~~~~~~~~l~~~ 148 (597)
|.++.+++..++..++.+......+.|.+..++ +....+.......++..++.++.++++|| +|||+++.++.++.++
T Consensus 231 ~~~~~ll~~~~~~~~~~~~~~~~~~y~~~y~~~-~~~~~~~~~~~~~i~~ii~~~~~~~l~~r-~gkk~~~~~~~~~~~~ 308 (473)
T PRK10429 231 DQLSCLLGMALAYNIASNIINGFAIYYFTYVIG-DADLFPYYLSYAGAANLVTLILFPRLVKS-LSRRILWAGASIFPVL 308 (473)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhheeeEEEEECC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCcHHHHHHHHHHHHH
Confidence 456666666676667666555554444443333 45555666666668888999999999999 8999999988887676
Q ss_pred HHHHHHHhhhccccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhhchhhhhhhhhhccCCCCCch-hhhhh
Q 007580 149 GLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKD-YKTHL 227 (597)
Q Consensus 149 g~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~-~~~~R 227 (597)
+.+...+.... ++ .+...+++..++.|++.+...+...++++|..|.++.. .++..
T Consensus 309 ~~~~~~~~~~~----~~-------------------~~~~~~~i~~~l~g~~~~~~~~~~~am~ad~id~~e~~tG~R~~ 365 (473)
T PRK10429 309 SCGVLLLMGLA----AP-------------------HNALLIVIAGILLNIGTALFWVLQVIMVADTVDYGEYKLGIRCE 365 (473)
T ss_pred HHHHHHHHhcc----Cc-------------------hhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHhcCccch
Confidence 66555432110 11 34456666777889999999999999999998744211 11114
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhhhccch
Q 007580 228 DRFFNFFYLSVTVGAIVAFTLVVYIQMEHGW 258 (597)
Q Consensus 228 ~~~~~~~~~~~~lg~~l~p~i~~~i~~~~gw 258 (597)
+..+++..+..-+|..+++.+.|++.+..|+
T Consensus 366 G~~~s~~~~~~K~~~al~~~i~g~~l~~~Gy 396 (473)
T PRK10429 366 SIAYSVQTMVVKGGSAFAAFFIGVVLGLIGY 396 (473)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 5678889999999999999999998765554
No 210
>PF05631 DUF791: Protein of unknown function (DUF791); InterPro: IPR008509 This family consists of several eukaryotic proteins of unknown function.
Probab=98.70 E-value=2.3e-06 Score=87.44 Aligned_cols=154 Identities=16% Similarity=0.069 Sum_probs=109.0
Q ss_pred HHHhhCCChHHHHHHHHHHHHHHHHHhhhhHHHhhcccchHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCcccccccc
Q 007580 96 MFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDRISQL 175 (597)
Q Consensus 96 l~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~lsD~~~GR~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~c~~~~~~ 175 (597)
+-++.|++..+.+.+...-.....+..++.|.++|| +|||+..++.++++.+..+.--.
T Consensus 60 LY~~yg~~~~qIa~Lf~~Gf~Ss~i~g~~~G~laD~-~Grk~~cl~~cily~~scl~k~~-------------------- 118 (354)
T PF05631_consen 60 LYESYGFSEHQIAILFVAGFASSAIFGTFVGSLADR-YGRKKACLLFCILYSLSCLTKHS-------------------- 118 (354)
T ss_pred HHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCchHHHHHHHHHHHHHHHHHhc--------------------
Confidence 446789999999988888788888888999999999 89999999999999887754332
Q ss_pred cCCCCCccchhHHHHHHHHHHHHHhhhchhhhhhhhh-hccCCCCCchhhhhhhhHHHHHH-HHHHHHHHHHHHHHHHhh
Q 007580 176 LGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFG-ADQFDERSKDYKTHLDRFFNFFY-LSVTVGAIVAFTLVVYIQ 253 (597)
Q Consensus 176 ~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~-ad~~~~~~~~~~~~R~~~~~~~~-~~~~lg~~l~p~i~~~i~ 253 (597)
+++..++++|++-|++......+-.+-. .|.-..+-+++ ..+.-|+... +.+.+-++++..++.++.
T Consensus 119 ---------~~~~~L~~GRvlgGiaTSLLfS~FEsW~V~Eh~~~g~~~~--~L~~tF~~~tf~~n~~vAI~aGv~a~~l~ 187 (354)
T PF05631_consen 119 ---------SNYPVLLLGRVLGGIATSLLFSAFESWMVHEHNKRGFPQE--WLSDTFSLATFFGNGVVAIGAGVVANVLA 187 (354)
T ss_pred ---------cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChH--HHHHHHHHHHHHHhHHHHHHHhHHHHHHH
Confidence 4678999999999999999988877654 33322221211 1444444433 334445556666666776
Q ss_pred hccc--hHHHHHHHHHHHHHHHHHHHHhcC
Q 007580 254 MEHG--WGSAFGALAIAMGISNMLFFIGTP 281 (597)
Q Consensus 254 ~~~g--w~~~f~i~~~~~~~~~~~~~~~~~ 281 (597)
+..+ -..+|....+..+++.++....++
T Consensus 188 ~~~~~g~vaPF~~a~~~l~~~~~~I~~~W~ 217 (354)
T PF05631_consen 188 DWFGFGPVAPFDAAIVLLAVAAVLILKTWP 217 (354)
T ss_pred HHhCCCCcchHHHHHHHHHHHHHHHHhccc
Confidence 6554 478888877777666655544443
No 211
>PRK09669 putative symporter YagG; Provisional
Probab=98.69 E-value=6.9e-07 Score=96.83 Aligned_cols=159 Identities=11% Similarity=0.009 Sum_probs=105.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHhhhhHHHhhcccchHHHHHHHHHHHHHHHH
Q 007580 72 LFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLT 151 (597)
Q Consensus 72 ~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~lsD~~~GR~~~~~~~~~l~~~g~~ 151 (597)
+.+++..++...+.... ..+..|..+..--+....+.......+...++.+++++++|| +|||+.+.++.++..++..
T Consensus 232 ~~l~~~~~~~~~~~~~~-~~~~~y~~~~~~~~~~~~~~~~~~~~i~~ii~~~~~~~l~~r-~gk~~~~~~~~~~~~~~~~ 309 (444)
T PRK09669 232 RIMFIFNVVLLTAVVTR-GGATLYYVNYVLLRPDLATLFLVTGMIAGLFGALLSERLLGK-FDRVRAFKWTIVAFVILSA 309 (444)
T ss_pred HHHHHHHHHHHHHHHHH-hhhhheeeeeecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hChHHHHHHHHHHHHHHHH
Confidence 33334444444443322 233344433322233334455556667778888999999999 8999999888766554333
Q ss_pred HHHHhhhccccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhhchhhhhhhhhhccCCCCCch-hhhhhhhH
Q 007580 152 GITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKD-YKTHLDRF 230 (597)
Q Consensus 152 ~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~-~~~~R~~~ 230 (597)
...+. ++ .+...+++..++.|++.++..+...++++|..|.++.+ .+...+..
T Consensus 310 ~~~~~-------~~-------------------~~~~~~~~~~~i~g~~~~~~~~~~~am~ad~~d~~e~~~G~r~~g~~ 363 (444)
T PRK09669 310 LIFFI-------PP-------------------SNVWLIFALNILFNFIQNLTTPLQWSMFSDVVDYEEKRSGRRLDGLV 363 (444)
T ss_pred HHHHh-------Cc-------------------chHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhcCcCcchHH
Confidence 22221 11 35556777778899999999999999999999844321 11124667
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhccch
Q 007580 231 FNFFYLSVTVGAIVAFTLVVYIQMEHGW 258 (597)
Q Consensus 231 ~~~~~~~~~lg~~l~p~i~~~i~~~~gw 258 (597)
++.+.+...+|.++|+.++|++.+..|+
T Consensus 364 ~s~~~~~~klg~alg~~i~g~ll~~~Gy 391 (444)
T PRK09669 364 FSTNLFAIKLGLAIGGAVVGWILAWVDY 391 (444)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 8889999999999999999998776665
No 212
>TIGR00885 fucP L-fucose:H+ symporter permease. This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector.
Probab=98.66 E-value=1.2e-06 Score=93.88 Aligned_cols=161 Identities=9% Similarity=-0.045 Sum_probs=115.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh-hCCChHHHHHHHHHHHHHHHHHhhhhHHHhhcccchHHHHHHHHHHHHHHH
Q 007580 72 LFIFGNEMAERMAYFGLSVNMVTFMFYV-MHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGL 150 (597)
Q Consensus 72 ~~~~~~~~~~~~~~~~~~~~l~~yl~~~-~~~s~~~a~~~~~~~~~~~~~~~~~~G~lsD~~~GR~~~~~~~~~l~~~g~ 150 (597)
+...+..|+......++.++++.|+.+. .+.+...++...+.+.....++.+++|+++|| +++|+++.++.++..+..
T Consensus 235 ~~~~l~~f~yvg~e~~~~s~l~~y~~~~~~~~~~~~a~~~~~~~~~~~~vGR~~~~~l~~r-~~~~~~l~i~~~~~~~~~ 313 (410)
T TIGR00885 235 REGVIAQFFYVGVQIMCWTFIIQYAVRLIPGMTAGFAANYNIGAMVIFFISRFIGTWLISY-LAAHKVLMAYAIIGMALC 313 (410)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCHHHHHHHHHHHHHHHH
Confidence 3344445555555556778889998653 24555556667777778899999999999999 899999888887777766
Q ss_pred HHHHHhhhccccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhhchhhhhhhhhhccCCCCCchhhhhhhhH
Q 007580 151 TGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRF 230 (597)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~R~~~ 230 (597)
++.... .+. ..+....+.|++.+.++|...+...+..+++. +...
T Consensus 314 ll~~~~----------------------------~~~-~~~~~l~~~glf~s~~fp~i~sl~~~~~g~~~------~~~s 358 (410)
T TIGR00885 314 LGSIFA----------------------------GGH-VGLYCLTLCSAFMSLMFPTIYGIALKGLGQDT------KYGA 358 (410)
T ss_pred HHHHHc----------------------------CCh-HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhh------hhhH
Confidence 666654 121 23466678889999999999999999998765 3222
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhcc------chHHHHHHHHHHHH
Q 007580 231 FNFFYLSVTVGAIVAFTLVVYIQMEH------GWGSAFGALAIAMG 270 (597)
Q Consensus 231 ~~~~~~~~~lg~~l~p~i~~~i~~~~------gw~~~f~i~~~~~~ 270 (597)
. ....+ .+|+++.|.+.|++.|.. +.+..|.++.++.+
T Consensus 359 ~-~l~~~-~~Gga~~p~l~G~~~d~~~~~~~~~~~~~~~~~~~~~~ 402 (410)
T TIGR00885 359 A-GLVMA-IIGGGIVPPLQGFIIDMKEIAAAPAVNTSFILPLLCFA 402 (410)
T ss_pred H-HHHHH-HhccchHHHHHHHHHHHhcccccCccchHHHHHHHHHH
Confidence 2 22222 399999999999999954 47788887665443
No 213
>KOG2532 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]
Probab=98.64 E-value=5.6e-07 Score=97.27 Aligned_cols=178 Identities=13% Similarity=0.088 Sum_probs=120.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHhhhhHHHhhcccc-------hHHHH-H
Q 007580 69 IAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLG-------RYWTI-A 140 (597)
Q Consensus 69 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~lsD~~~G-------R~~~~-~ 140 (597)
..+|.+++..++..++++.+..++|.|+.+.+|++..+.|+..++-.+...+..+++|.++|+..- +||.+ .
T Consensus 258 ~~vwai~~~~f~~~~~~~~l~~y~PtY~~~VL~f~v~~~G~~salP~l~~~~~k~~~g~lsD~l~~~~ls~t~~rkifn~ 337 (466)
T KOG2532|consen 258 PPVWAIWISAFGGNWGFYLLLTYLPTYLKEVLGFDVRETGFLSALPFLAMAIVKFVAGQLSDRLTFRILSETTVRKIFNT 337 (466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhccCchHhHHHHHHh
Confidence 478999999999999999999999999999999999999999999999999999999999998422 12222 2
Q ss_pred HHHHHHHHHHHHHHHhhhccccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhhchhhhhhhhhhccCCCCC
Q 007580 141 IFTTIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERS 220 (597)
Q Consensus 141 ~~~~l~~~g~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~ 220 (597)
++...-.++++.+++. .|+ .. ......+.++..+.|+..++..-+ ..|..| +.
T Consensus 338 i~~~~~ai~l~~l~~~-----------~~~----------~~-~~a~~~l~~~~~~~g~~~~Gf~~~----~~~~ap-q~ 390 (466)
T KOG2532|consen 338 IAFGGPAVFLLVLAFT-----------SDE----------HR-LLAVILLTIAIGLSGFNISGFYKN----HQDIAP-QH 390 (466)
T ss_pred HHHHHHHHHHHeeeec-----------CCC----------cc-hHHHHHHHHHHHHcccchhhhHhh----hhhccc-hH
Confidence 2222222222222222 111 00 001112222222223322222221 112233 33
Q ss_pred chhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhc---cchHHHHHHHHHHHHHHHHHHHHh
Q 007580 221 KDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQME---HGWGSAFGALAIAMGISNMLFFIG 279 (597)
Q Consensus 221 ~~~~~~R~~~~~~~~~~~~lg~~l~p~i~~~i~~~---~gw~~~f~i~~~~~~~~~~~~~~~ 279 (597)
-+..+++.+...++.+.++|.+.+.+..+ ..|++.|.+.+++.+++.+++.++
T Consensus 391 ------a~~l~g~~~~~~~~~~~~~P~~vg~~~~~~t~~eW~~VF~i~a~i~~~~~i~f~~f 446 (466)
T KOG2532|consen 391 ------AGFVMGIINFVGALAGFIAPLLVGIIVTDNTREEWRIVFLIAAGILIVGNIIFLFF 446 (466)
T ss_pred ------HHHHHHHHHHHHHHHHHHHHHheeeEeCCCCHHHHHHHHHHHHHHHHHhchheeEe
Confidence 58899999999999999999999999842 379999999999888877666554
No 214
>TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial. The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists.
Probab=98.64 E-value=1.3e-06 Score=95.56 Aligned_cols=188 Identities=11% Similarity=0.090 Sum_probs=131.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChHH----HHHHHHHHHHHHHHHhhhhH----HHhhcccchHHH--
Q 007580 69 IAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFAD----SSNAVNNFLGISQASSVLGG----FLADAYLGRYWT-- 138 (597)
Q Consensus 69 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~----a~~~~~~~~~~~~~~~~~~G----~lsD~~~GR~~~-- 138 (597)
+.++.+++..++..+.+....+.++.|..+..+.+... .++..+...+...+..++.. ++.||..+.+..
T Consensus 272 ~~~l~l~~~~~~~~~~~~Q~~s~l~l~~~~~~~~~~~~~~ip~~~~~~~n~~~iil~~p~~~~~~~~l~~~~~~~~~~~k 351 (475)
T TIGR00924 272 YAYIVLFLEAVVFWVLYAQMPTSLNFFADNNMHHEMLGMSVPVIWFQSLNPFWVVVGSPVLAMIWTRLGRKGKDPTTPLK 351 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccccceEECHHHHHhhhHHHHHHHHHHHHHHHHHHHhCCCCCCcHHH
Confidence 34555555555666776677777888887765554222 45555555555555555544 445541222333
Q ss_pred HHHHHHHHHHHHHHHHHhhhccccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhhchhhhhhhhhhccCCC
Q 007580 139 IAIFTTIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDE 218 (597)
Q Consensus 139 ~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~~~~ 218 (597)
+.++.++..++...+++...... .+...+.+++++..++.++|.....|...+++++..|+
T Consensus 352 ~~~G~~l~~~~~~~~~~~~~~~~-------------------~~~~~s~~~~i~~~~~~~~ge~~~~p~~~~~~~~~aP~ 412 (475)
T TIGR00924 352 FTLGMLFCGASFLTFAASIWFAD-------------------AGGLTSPWFMVLIYLFQTLGELMISPLGLSWWTKIAPQ 412 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHhhcC-------------------CCCccCHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCCH
Confidence 36778888877777765421100 00114778889999999999999999999999999999
Q ss_pred CCchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHhcC
Q 007580 219 RSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGTP 281 (597)
Q Consensus 219 ~~~~~~~~R~~~~~~~~~~~~lg~~l~p~i~~~i~~~~gw~~~f~i~~~~~~~~~~~~~~~~~ 281 (597)
+. |++.++++.....+|..+++.+.....+..+|.+.|...++.+++..+++++..+
T Consensus 413 ~~------~g~~~g~~~l~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 469 (475)
T TIGR00924 413 RL------MGQMLGMWFLAQAMGSLLGGYLATFGAVPQGVTGVFGKIGLVTLLVGVVMALMVP 469 (475)
T ss_pred HH------HHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhhHHHHHHHHHHHHHHHHHHHHH
Confidence 99 9999999999999999999999988777778888888777766665555544443
No 215
>PF03825 Nuc_H_symport: Nucleoside H+ symporter
Probab=98.61 E-value=5.4e-06 Score=88.31 Aligned_cols=177 Identities=8% Similarity=0.002 Sum_probs=128.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHhhhhHHHhhcccchHHHHHHHHHHHHHHHHH
Q 007580 73 FIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTG 152 (597)
Q Consensus 73 ~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~lsD~~~GR~~~~~~~~~l~~~g~~~ 152 (597)
..++..++..........+...|+++.-+.+....+...+.-.+.-.+.-.+.+++-.| +|-++++.++.+.+++=..+
T Consensus 211 ~Fll~~~l~~~~~~~~~~f~~~yl~~~gg~~~~~~g~~~~l~~~aEi~~f~~~~~~~~r-~g~~~ll~~a~~~~~vR~~l 289 (400)
T PF03825_consen 211 VFLLAAFLIGISHAAYYTFFSIYLQELGGYSGSTIGILWALGVVAEIPFFFFSGRFLKR-FGIKWLLLLALVAYAVRWLL 289 (400)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHh-cCHHHHHHHHHHHHHHHHHH
Confidence 34444455555555666777889876544777777777777777788888899999999 89999999999988887766
Q ss_pred HHHhhhccccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhhchhhhhhhhhhccCCCCCchhhhhhhhHHH
Q 007580 153 ITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFN 232 (597)
Q Consensus 153 ~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~R~~~~~ 232 (597)
.+.... | ........+.+..+.|+..+....+...++.+..|++. |.++.+
T Consensus 290 ~a~~~~-----~------------------~~~~~~~~~l~q~lhG~tf~~~~~a~~~yi~~~~p~~~------~at~Q~ 340 (400)
T PF03825_consen 290 YAYFSD-----P------------------WPFIVALQLLGQLLHGLTFGLFHAASVRYIDRIAPPEL------RATAQG 340 (400)
T ss_pred HHHhcC-----C------------------cHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhCCccc------hHHHHH
Confidence 665411 0 00111223344567999999999999999999999999 999999
Q ss_pred HHHH-HHHHHHHHHHHHHHHhhhccchHH------HHHHHHHHHHHHHHHHHHh
Q 007580 233 FFYL-SVTVGAIVAFTLVVYIQMEHGWGS------AFGALAIAMGISNMLFFIG 279 (597)
Q Consensus 233 ~~~~-~~~lg~~l~p~i~~~i~~~~gw~~------~f~i~~~~~~~~~~~~~~~ 279 (597)
+++. ...+|..+|..++|++.|++|-+. .+.+.+...++..+++.+.
T Consensus 341 l~~~~~~Glg~~iG~~igG~l~~~~g~~~~~~~~~~~~v~a~~~~~~~~~f~~~ 394 (400)
T PF03825_consen 341 LYSALSFGLGGAIGSLIGGWLYDAFGARGMFDWSAVFLVFAVMALVILVLFVIL 394 (400)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHhcchhhhhHHHHHHHHHHHHHHHHHHHHhh
Confidence 9776 468999999999999999876443 3444444444444444443
No 216
>PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) []. The lacY family of Escherichia coli and Klebsiella pneumoniae are proton/beta-galactoside symporters, which, like most sugar transporters, are integral membrane proteins with 12 predicted transmembrane (TM) regions. Also similar to the lacY family are the rafinose (rafB) and sucrose (cscB) permeases from E. coli []. This entry also includes bacterial phenylproprionate permease.; PDB: 1PV7_B 1PV6_A 2Y5Y_B 2CFQ_A 2V8N_B 2CFP_A.
Probab=98.53 E-value=9.3e-06 Score=85.60 Aligned_cols=177 Identities=8% Similarity=0.073 Sum_probs=135.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCC---ChHHHHHHHHHHHHHHHHHhhhhHHHhhcccchHHHHHHHHHHH
Q 007580 70 AALFIFGNEMAERMAYFGLSVNMVTFMFYVMHK---SFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIY 146 (597)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~---s~~~a~~~~~~~~~~~~~~~~~~G~lsD~~~GR~~~~~~~~~l~ 146 (597)
.+|.+.+........++..-...+.|.+..++- +....|...+.-.+.-++...+..++-+| +|.|+.++++.++.
T Consensus 221 ~fw~~~l~v~g~~~~Y~vfdqqf~~y~~~~f~~~~~g~~~~G~l~s~~v~~E~~~m~~~p~li~r-ig~k~~Lllag~i~ 299 (412)
T PF01306_consen 221 NFWFFVLFVIGVAAIYDVFDQQFPIYFASFFQSAGQGNQMYGYLWSVQVFLEALMMFFSPWLINR-IGAKNLLLLAGVIM 299 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-H-HHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccChhHHhHHHHHHHHHHHHHHHHHHHHHHh-cChHhHHHHHHHHH
Confidence 444444444444444454544567788765542 33456777777788888899999999999 89999999999999
Q ss_pred HHHHHHHHHhhhccccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhhchhhhhhhhhhccCCCCCchhhhh
Q 007580 147 LAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTH 226 (597)
Q Consensus 147 ~~g~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~ 226 (597)
++=.+.++++ .+...+.+.+.+-|+-.+.......-++++.+|++-
T Consensus 300 ~iRi~~~~~~----------------------------~~~~~i~~~klLH~~e~~l~lva~fkYI~~~fd~rl------ 345 (412)
T PF01306_consen 300 AIRIIGSGFA----------------------------TNPWVISLIKLLHALEFPLLLVAAFKYITAHFDKRL------ 345 (412)
T ss_dssp HHHHHHHHT------------------------------SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS-GGG------
T ss_pred HHHHHHHhhh----------------------------cchHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHhH------
Confidence 9888888877 567888999999999999999999999999999887
Q ss_pred hhhHHHH-HHHHHHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHhcC
Q 007580 227 LDRFFNF-FYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGTP 281 (597)
Q Consensus 227 R~~~~~~-~~~~~~lg~~l~p~i~~~i~~~~gw~~~f~i~~~~~~~~~~~~~~~~~ 281 (597)
.++...+ ++.+..+|..+.+.++|++.|+.|.+-.|++.+.+.++..++..+..+
T Consensus 346 sAt~y~v~~~~~~~~~~~i~s~~~G~lyd~~G~~~tylimg~iv~~~~li~~f~l~ 401 (412)
T PF01306_consen 346 SATLYLVGFQFAKQIGIIILSPLAGYLYDRIGFQHTYLIMGLIVLPFTLISAFTLK 401 (412)
T ss_dssp HHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS-
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhHHhhHhhcCcHHHHHHHHHHHHHHHHHheeeec
Confidence 7777777 578889999999999999999999999998888776665555554444
No 217
>PRK11652 emrD multidrug resistance protein D; Provisional
Probab=98.53 E-value=1.1e-05 Score=85.75 Aligned_cols=140 Identities=11% Similarity=-0.059 Sum_probs=98.1
Q ss_pred HHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHhhhhHHHhhcccchHHHHHHHHHHHHHHHHHHHHhhhccccCCCCC
Q 007580 88 LSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQD 167 (597)
Q Consensus 88 ~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~lsD~~~GR~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~ 167 (597)
+....+.|+++.+|.+..+.++.......+..++.++.+++.|| +||+.... .....++.+......... .
T Consensus 226 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~-~~~~~~~~--~~~~~~~~~~~~~~~~~~---~--- 296 (394)
T PRK11652 226 FEACSGVLMGAVLGLSSMTVSILFILPIPAAFFGAWFAGRPNKR-FSTLMWQS--VICCLLAGLLMWIPGWFG---V--- 296 (394)
T ss_pred HHHhChHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHH--HHHHHHHHHHHHHHHHhc---c---
Confidence 34455678888899999998888877788888888888999998 67433322 222222222221111000 0
Q ss_pred cccccccccCCCCCccchhHHHHHHHHHHHHHhhhchhhhhhhhhhccCCCCCchhhhhhhhHHHHHHHHHHHHHHHHHH
Q 007580 168 NCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFT 247 (597)
Q Consensus 168 ~c~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~R~~~~~~~~~~~~lg~~l~p~ 247 (597)
.+...++++..+.++|.+...|...+...|.+| ++ ++...++.+...++|..+++.
T Consensus 297 -----------------~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~-~~------~g~~~~~~~~~~~lg~~~~~~ 352 (394)
T PRK11652 297 -----------------MNVWTLLVPAALFFFGAGMLFPLATSGAMEPFP-YL------AGTAGALLGGLQNIGSGLAAL 352 (394)
T ss_pred -----------------ccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc-cc------chHHHHHHHHHHHHHHHHHHH
Confidence 234556677788999999999999999999887 45 788889998888999999999
Q ss_pred HHHHhhhccchHH
Q 007580 248 LVVYIQMEHGWGS 260 (597)
Q Consensus 248 i~~~i~~~~gw~~ 260 (597)
+++++.+...+..
T Consensus 353 ~~~~~~~~~~~~~ 365 (394)
T PRK11652 353 LSAMLPQTGQFSL 365 (394)
T ss_pred HHHHccCCchHHH
Confidence 9998876644443
No 218
>TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator).
Probab=98.53 E-value=8e-07 Score=93.23 Aligned_cols=138 Identities=12% Similarity=0.008 Sum_probs=100.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHhhhhHHHhhcccchHHHHHHHHHHHHHHHH
Q 007580 72 LFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLT 151 (597)
Q Consensus 72 ~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~lsD~~~GR~~~~~~~~~l~~~g~~ 151 (597)
+.+.+..++.....+++..+++.|+++.+|.+..+++.....+.+...++.+++|+++|| +|||+.+..+..+...+..
T Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r-~g~~~~~~~~~~~~~~~~~ 306 (366)
T TIGR00886 228 WILALLYSVTFGSFLGVSSIFAMFFKDQFGLSKVTAGAYASLGGLLGSLARPLGGAISDR-LGGARKLLMSFLGVAMGAF 306 (366)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHhhccchHHHh-hccchhHHHHHHHHHHHHH
Confidence 344444455555567778888999999999999999988999999999999999999999 8999888877766666655
Q ss_pred HHHHhhhccccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhhchhhhhhhhhhccCCCCCchhhhhhhhHH
Q 007580 152 GITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFF 231 (597)
Q Consensus 152 ~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~R~~~~ 231 (597)
++.+... ++ .+...+++..++.+++.|...+...+++++.+| ++ |++..
T Consensus 307 ~~~~~~~-----~~-------------------~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~-~~------~g~~~ 355 (366)
T TIGR00886 307 LVVLGLV-----SP-------------------LSLAVFIVLFVALFFFSGAGNGSTFALVPHIFR-RA------TGAVS 355 (366)
T ss_pred HHHhcCC-----Cc-------------------chHHHHHHHHHHHHHHhccccchhhhcchhhch-hh------cccHH
Confidence 5554311 00 134445555556666666666777788888887 45 89999
Q ss_pred HHHHHHHHHH
Q 007580 232 NFFYLSVTVG 241 (597)
Q Consensus 232 ~~~~~~~~lg 241 (597)
++.+...++|
T Consensus 356 g~~~~~~~~g 365 (366)
T TIGR00886 356 GLVGAIGNLG 365 (366)
T ss_pred HHHHHhccCC
Confidence 8877776665
No 219
>COG0477 ProP Permeases of the major facilitator superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / Inorganic ion transport and metabolism / General function prediction only]
Probab=98.50 E-value=8.6e-06 Score=81.48 Aligned_cols=143 Identities=20% Similarity=0.248 Sum_probs=110.0
Q ss_pred HHHHHhhCCCh--HHHHHHHHHHHHHHHHHhhhhHHHhhcccchHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCcccc
Q 007580 94 TFMFYVMHKSF--ADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDR 171 (597)
Q Consensus 94 ~yl~~~~~~s~--~~a~~~~~~~~~~~~~~~~~~G~lsD~~~GR~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~c~~ 171 (597)
..+..+++.+. ...++..+.+.+...++.++.|.++|| +|||+.+..+.....++.+++.+...
T Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~-~g~~~~~~~~~~~~~~~~~~~~~~~~------------- 91 (338)
T COG0477 26 PLLLSTLSLSSGRLLYGLLLSAFFLGYAIGSLLAGPLGDR-YGRRKVLIIGLLLFLLGTLLLALAPN------------- 91 (338)
T ss_pred HHHHHHcCCCchhHHHHHHHHHHHHHHHHHhhhhhhcccc-ccchHHHHHHHHHHHHHHHHHHhCcc-------------
Confidence 33444555554 478889999999999999999999999 69998888888765556555555411
Q ss_pred cccccCCCCCccchhHHHHHHHHHHHHHhhhchhhhhhhhhhccCCC-CCchhhhhhhhHHHHHHH-HHHHHHHHHHHHH
Q 007580 172 ISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDE-RSKDYKTHLDRFFNFFYL-SVTVGAIVAFTLV 249 (597)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~~~~-~~~~~~~~R~~~~~~~~~-~~~lg~~l~p~i~ 249 (597)
.+...+++.|++.|++.+...+...++++|.+|+ +. |+...+.... ...+|..++|.++
T Consensus 92 -------------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~ 152 (338)
T COG0477 92 -------------VGLALLLILRLLQGLGGGGLLPVASALLSEWFPEATE------RGLAVGLVTLGAGALGLALGPLLA 152 (338)
T ss_pred -------------chHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCchhH------HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2467888999999999999999999999999998 44 8888888777 5788888888777
Q ss_pred HHhhhc--cchHHHHHHHHHHH
Q 007580 250 VYIQME--HGWGSAFGALAIAM 269 (597)
Q Consensus 250 ~~i~~~--~gw~~~f~i~~~~~ 269 (597)
+.+... .+|++.|.+.....
T Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~ 174 (338)
T COG0477 153 GLLLGALLWGWRAAFLLAALLG 174 (338)
T ss_pred HHHHHHHhcchHHHHHHHHHHH
Confidence 776654 57998666555433
No 220
>PF06813 Nodulin-like: Nodulin-like; InterPro: IPR010658 This entry represents a conserved region within plant nodulin-like proteins and a number of uncharacterised proteins.
Probab=98.45 E-value=1.5e-05 Score=78.60 Aligned_cols=157 Identities=12% Similarity=0.104 Sum_probs=110.6
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHhhhhHHHhhcccchHHHHHHHHHHH
Q 007580 67 GWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIY 146 (597)
Q Consensus 67 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~lsD~~~GR~~~~~~~~~l~ 146 (597)
||..+........+.... |.+..+ .+.+++.+|+|.++...+-..-.++..++ ++.|.+.|+ +|.+.++.++.+..
T Consensus 1 rW~~l~a~~~v~~~~Gt~-Y~Fs~y-S~~Lk~~l~~sq~~l~~l~~~~~~G~~~G-~~~G~l~d~-~gp~~~l~iG~~~~ 76 (250)
T PF06813_consen 1 RWLSLVASIWVQLCSGTT-YTFSAY-SPQLKSRLGYSQSQLNTLSTAGDIGSYFG-ILAGLLYDR-FGPWVVLLIGAVLG 76 (250)
T ss_pred ChhhHHHHHHHHHhcCcc-cchhhh-hHHHHHHhCCCHHHHHHHHHHHHHHhhcc-HHHHHHHHh-cchHHHHHHHHHHH
Confidence 455444444444443332 444443 56789999999999999998888998875 788999998 89999999999999
Q ss_pred HHHHHHHHHhhhccccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhhchhhhhhhhhhccCCCCCchhhhh
Q 007580 147 LAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTH 226 (597)
Q Consensus 147 ~~g~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~ 226 (597)
.+|..++.++..-.. + ....+.+.+..++.+.+.+...........+.||. +
T Consensus 77 ~~GY~~~~l~~~~~i--~-------------------~~~~~~~~~~~~l~~~s~~~~~ta~lvt~~~NFP~-~------ 128 (250)
T PF06813_consen 77 FVGYGLLWLAVSGRI--P-------------------SLPVWLMCLFLFLGGNSSCWFNTASLVTCVRNFPR-S------ 128 (250)
T ss_pred HHHHHHHHHHHhCcc--C-------------------ccchHHHHHHHHHHcccHHHhhhHHHHHHHHhCcc-c------
Confidence 999999988744110 0 02455666666666666666556666666688984 6
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 007580 227 LDRFFNFFYLSVTVGAIVAFTLVVYIQME 255 (597)
Q Consensus 227 R~~~~~~~~~~~~lg~~l~p~i~~~i~~~ 255 (597)
||+..++.-....+++.+-..+...+...
T Consensus 129 RG~vvgilk~~~GLSaai~t~i~~~~f~~ 157 (250)
T PF06813_consen 129 RGTVVGILKGFFGLSAAIFTQIYSAFFGD 157 (250)
T ss_pred cCceehhhhHHHHhHHHHHHHHHHHHcCC
Confidence 89999997777777776655555444433
No 221
>PRK11462 putative transporter; Provisional
Probab=98.43 E-value=2.4e-05 Score=85.30 Aligned_cols=158 Identities=9% Similarity=0.021 Sum_probs=95.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHhhhhHHHhhcccchHHHHHHHHHHHHHHHHH
Q 007580 73 FIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTG 152 (597)
Q Consensus 73 ~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~lsD~~~GR~~~~~~~~~l~~~g~~~ 152 (597)
.++...++..++..........|.+..++. ....+.....+.++..++.+++++++|| +|+|+++..+.++..+..++
T Consensus 232 ~l~~~~~~~~~~~~~~~~~~~y~~~y~~g~-~~~~~~~l~~~~i~~iig~~l~~~l~~r-~gkk~~~~~~~~~~~~~~~~ 309 (460)
T PRK11462 232 IVGLLTIFNILAVCVRGGAMMYYVTWILGT-PEVFVAFLTTYCVGNLIGSALAKPLTDW-KCKVTIFWWTNALLAVISLA 309 (460)
T ss_pred HHHHHHHHHHHHHHHHHhHhhhhhhhhcCC-hHHHHHHHHHHHHHHHHHHHHHHHHHHH-hChHHHHHHHHHHHHHHHHH
Confidence 333344444444333333333344433443 3344566677788888999999999999 89998876555444333333
Q ss_pred HHHhhhccccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhhchhhhhhhhhhccCCCCCchhhhh-hhhHH
Q 007580 153 ITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTH-LDRFF 231 (597)
Q Consensus 153 ~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~-R~~~~ 231 (597)
..+. +. .+...+++..++.|++.+...+...++++|..+.++-..-+. -+..+
T Consensus 310 ~~~~-------~~-------------------~~~~~~~~~~~l~g~~~~~~~~l~~~m~ad~~d~~e~~tG~r~~g~~~ 363 (460)
T PRK11462 310 MFFV-------PM-------------------QASITMFVFIFVIGVLHQLVTPIQWVMMSDTVDYGEWCNGKRLTGISF 363 (460)
T ss_pred HHHh-------ch-------------------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhHHhcCCCchHHHH
Confidence 2221 00 222334445566788887777777888999887432111111 24456
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhccch
Q 007580 232 NFFYLSVTVGAIVAFTLVVYIQMEHGW 258 (597)
Q Consensus 232 ~~~~~~~~lg~~l~p~i~~~i~~~~gw 258 (597)
+.+.+...+|.++++.++|++.+..|+
T Consensus 364 a~~~f~~Klg~alg~~i~g~iL~~~Gy 390 (460)
T PRK11462 364 AGTLFVLKLGLAFGGALIGWMLAYGGY 390 (460)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 777788899999999998887655444
No 222
>KOG3098 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.40 E-value=0.00018 Score=76.78 Aligned_cols=101 Identities=20% Similarity=0.261 Sum_probs=78.0
Q ss_pred HHHHHHHHHHHhhhhHHHhhcccchHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCcccccccccCCCCCccchhHHHH
Q 007580 111 VNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYL 190 (597)
Q Consensus 111 ~~~~~~~~~~~~~~~G~lsD~~~GR~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~l 190 (597)
..+-.....+..++++.+.|. .|.|+.+.++...+....+..-. .|...+
T Consensus 56 ~aiiY~~ftv~~l~~psiv~~-i~~K~~lv~ga~~y~~f~~gfl~-----------------------------~N~y~~ 105 (461)
T KOG3098|consen 56 QAIIYAFFTVSCLFAPSIVNF-LGPKWALVIGATCYAAFPLGFLF-----------------------------PNSYYL 105 (461)
T ss_pred HHHHHHHHHHHHHhhHHHHHH-hhHHHHHHHHhHHHHHHHHHHHh-----------------------------cchHHH
Confidence 445556677788999999997 89999999999888776655554 356788
Q ss_pred HHHHHHHHHhhhchhhhhhhhhhccCCCCCchhhhhhhhHHHHHHHHHHHHHHHHHH
Q 007580 191 YTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFT 247 (597)
Q Consensus 191 ~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~R~~~~~~~~~~~~lg~~l~p~ 247 (597)
+++-.+.|+|.+..+.-...++++..+++. +.+..++.......+..+|..
T Consensus 106 yfssallG~Gaallw~GqG~ylt~~st~~t------ie~Nisi~Wai~~~~li~Ggi 156 (461)
T KOG3098|consen 106 YFSSALLGFGAALLWTGQGGYLTSNSTRET------IERNISIFWAIGQSSLIIGGI 156 (461)
T ss_pred HHHHHHhhhhHHheecccceehhhcCChhh------HHHHHHHHHHHHHHHHHhhhH
Confidence 899999999999999999999999998887 666666644444444444433
No 223
>COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism]
Probab=98.35 E-value=6.8e-06 Score=87.54 Aligned_cols=161 Identities=14% Similarity=0.041 Sum_probs=124.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHhhhhHHHhhcccchHHHHHHHHHHHHHH
Q 007580 70 AALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAG 149 (597)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~lsD~~~GR~~~~~~~~~l~~~g 149 (597)
....+++..++...++....+..+.|.+..+|.+.............+..++.++.-+|++| +|+|+++.++.++.+++
T Consensus 237 p~~~~l~~~l~~~~~~~i~~s~~~yy~~y~lg~~~l~~~~~~~~~~~~~l~~~~~~p~L~~~-~gkk~~~~~~~~~~~i~ 315 (467)
T COG2211 237 PLLLLLLMNLLLFIAFNIRGSIMVYYVTYVLGDPELFAYLLLLASGAGLLIGLILWPRLVKK-FGKKKLFLIGLLLLAVG 315 (467)
T ss_pred hHHHHHHHHHHHHHHHHHHhhhhheeEEEEcCChHHHHHHHHHHHHHHHHHHHHhHHHHHHH-hchHHHHHHHHHHHHHH
Confidence 45555556667677766666666777787888888888888888888888889999999999 89999999999999999
Q ss_pred HHHHHHhhhccccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhhchhhhhhhhhhccCCCCCchhhhh-hh
Q 007580 150 LTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTH-LD 228 (597)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~-R~ 228 (597)
.+++.+... .+..++++..++.++|.+...+...++++|..+-+|..+-+. -|
T Consensus 316 ~~~~~f~~~--------------------------~~~~l~~~~~~i~~~g~~~~~~l~wam~~d~vDyge~~TG~R~eG 369 (467)
T COG2211 316 YLLLYFTPA--------------------------GSVVLIVVALIIAGVGTGIANPLPWAMVADTVDYGEWKTGVRREG 369 (467)
T ss_pred HHHHHhhcC--------------------------cchHHHHHHHHHHHHHhhccccccHHHhcchhhHHHHHhCCCchh
Confidence 999888731 467888888899999999999999999999998554322111 24
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhhccc
Q 007580 229 RFFNFFYLSVTVGAIVAFTLVVYIQMEHG 257 (597)
Q Consensus 229 ~~~~~~~~~~~lg~~l~p~i~~~i~~~~g 257 (597)
..++.+.+..=+|.+++..+.|++....|
T Consensus 370 i~~s~~tF~~K~g~ala~~~~g~~L~~~G 398 (467)
T COG2211 370 IVYSGMTFFRKLGLALAGFIPGWILGAIG 398 (467)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 55666777777788888777777654433
No 224
>KOG3764 consensus Vesicular amine transporter [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.33 E-value=1.4e-06 Score=89.17 Aligned_cols=189 Identities=12% Similarity=-0.043 Sum_probs=131.0
Q ss_pred cccCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHhhhhHHHhhcccc--hHHHH
Q 007580 62 LSKTGGWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLG--RYWTI 139 (597)
Q Consensus 62 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~lsD~~~G--R~~~~ 139 (597)
|+....+.+........++ ++.....-+.+++++.+.+..+.-+.+...--..+.+.++..+.|.|+|| ++ |....
T Consensus 264 ~~Ll~dP~I~~~agai~~~-n~~lafLePtlslwm~e~m~~p~w~~G~~fLp~~~~y~ig~~lfg~la~k-~~~~~wl~~ 341 (464)
T KOG3764|consen 264 WSLLMDPYILLIAGAITFS-NSSLAFLEPTLSLWMLETMFTPGWEVGLAFLPASLSYAIGTNLFGKLADK-YPHLRWLLS 341 (464)
T ss_pred HHHHhCchHhhhhcchhhc-cchHHHhCcccHHHHHHhccCCCcceeeeecccccchhccCchHHHHHHh-cCchhHHHH
Confidence 4444444333333333333 34434555777888888888555577777777788899999999999999 79 65544
Q ss_pred HHHHHHHHHHHHHHHHhhhccccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhhchhhhhhhhhhccCCCC
Q 007580 140 AIFTTIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDER 219 (597)
Q Consensus 140 ~~~~~l~~~g~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~~~~~ 219 (597)
..+.++..+.+....++ .++..+++-++..+++.+...+......+...+.+
T Consensus 342 ~~gl~~~G~~~~~iP~~----------------------------~~~~~L~vp~~~l~~~i~~~dasl~P~l~~lvd~r 393 (464)
T KOG3764|consen 342 LGGLATVGVSSGPIPFA----------------------------TSIAQLWVPNFGLGFGIGLADASLIPTLGYLVDPR 393 (464)
T ss_pred HHHHHHHHHHhchhHhh----------------------------hhHHHHhhhhHHHHHHHHHHHHHHhhhhHHhcchh
Confidence 55544444333333333 46777888888888888887777777777777665
Q ss_pred CchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHhc
Q 007580 220 SKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGT 280 (597)
Q Consensus 220 ~~~~~~~R~~~~~~~~~~~~lg~~l~p~i~~~i~~~~gw~~~f~i~~~~~~~~~~~~~~~~ 280 (597)
...+-..-++..++...+..+|..+||.++|.+.+..|++|...+.++..++...++.+.+
T Consensus 394 h~s~~~vYGsVyaIad~a~sla~a~GP~~gg~iv~~iGF~wl~~iig~~n~iyapvl~ll~ 454 (464)
T KOG3764|consen 394 HVSGFNVYGSVYAIADAAFSLAYAIGPTFGGSLVEAIGFEWLMTIIGILNLIYAPVLLLLR 454 (464)
T ss_pred hccccceeeeHHHHHHHHHHHhhhccccccchheeehhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5332223678888999999999999999999999999999998887777666555544433
No 225
>PRK10207 dipeptide/tripeptide permease B; Provisional
Probab=98.32 E-value=1.4e-05 Score=87.59 Aligned_cols=178 Identities=8% Similarity=0.053 Sum_probs=117.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhCCChH----HHHHHHHHHHHHHHHHhhhhHHHhhcccchHH-------HHHHHHHHH
Q 007580 78 EMAERMAYFGLSVNMVTFMFYVMHKSFA----DSSNAVNNFLGISQASSVLGGFLADAYLGRYW-------TIAIFTTIY 146 (597)
Q Consensus 78 ~~~~~~~~~~~~~~l~~yl~~~~~~s~~----~a~~~~~~~~~~~~~~~~~~G~lsD~~~GR~~-------~~~~~~~l~ 146 (597)
..+....+......++.|.++..+.+.. ...+..+...+...+..++.|++.|| +|||+ -+.++.++.
T Consensus 278 ~~~f~~~~~q~~~~l~l~~~~~~~~~~~G~~i~~~~~~~~n~~~iii~~pl~~~l~~r-l~~r~~~~~~~~k~~~G~~l~ 356 (489)
T PRK10207 278 AVVFYILYAQMPTSLNFFAINNVHHEILGFSINPVSFQALNPFWVVVASPILAGIYTH-LGSKGKDLSMPMKFTLGMFLC 356 (489)
T ss_pred HHHHHHHHHHcccHHHHHHHHhccccccceEECHHHHHhHhHHHHHHHHHHHHHHHHH-HhhCCCCCCcHHHHHHHHHHH
Confidence 4444455555556777787754333211 22344444555666777788999999 79886 367777777
Q ss_pred HHHHHHHHHhhh-ccccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhhchhhhhhhhhhccCCCCCchhhh
Q 007580 147 LAGLTGITLCAT-MKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKT 225 (597)
Q Consensus 147 ~~g~~~~~~~~~-~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~ 225 (597)
.++.+.++.... ..... ...+.+.++...++.|+|.+...|...+++.+..|++.
T Consensus 357 ~~~~~~~~~~~~~~~~~~-------------------~~~s~~~~i~~~~l~g~Ge~~~~~~g~~~~~~~aP~~~----- 412 (489)
T PRK10207 357 SLGFLTAAAAGMWFADAQ-------------------GLTSPWFIVLVYLFQSLGELFISALGLAMIAALVPQHL----- 412 (489)
T ss_pred HHHHHHHHHHHHhhcCCC-------------------CccCHHHHHHHHHHHHHHHHHHhHHHHHHHHHhChHHH-----
Confidence 767655433211 00000 01345667778889999999999999999999999999
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHhhh----------ccchHHHHHHHHHHHHHHHHHHHHhcC
Q 007580 226 HLDRFFNFFYLSVTVGAIVAFTLVVYIQM----------EHGWGSAFGALAIAMGISNMLFFIGTP 281 (597)
Q Consensus 226 ~R~~~~~~~~~~~~lg~~l~p~i~~~i~~----------~~gw~~~f~i~~~~~~~~~~~~~~~~~ 281 (597)
++..++++++..++|..+|..++.+... ...+.+.|...++..++..++++...+
T Consensus 413 -~g~~~g~~~l~~~ig~~lg~~l~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~v~~~~~~~ 477 (489)
T PRK10207 413 -MGFILGMWFLTQAAAFLLGGYVATFTAVPDNITDPLETLPVYTNVFGKIGLVTLGVAVVMALMVP 477 (489)
T ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHHhccccccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999888866521 112456666666655554444444333
No 226
>PRK09584 tppB putative tripeptide transporter permease; Reviewed
Probab=98.32 E-value=2.8e-05 Score=85.59 Aligned_cols=176 Identities=15% Similarity=0.136 Sum_probs=113.7
Q ss_pred HHHHHHHHHHHHHHHHHHH--hhCCCh------HHHHHHHHHHHHHHHHHhhhh----HHHhhcccchHHHHHHHHHHHH
Q 007580 80 AERMAYFGLSVNMVTFMFY--VMHKSF------ADSSNAVNNFLGISQASSVLG----GFLADAYLGRYWTIAIFTTIYL 147 (597)
Q Consensus 80 ~~~~~~~~~~~~l~~yl~~--~~~~s~------~~a~~~~~~~~~~~~~~~~~~----G~lsD~~~GR~~~~~~~~~l~~ 147 (597)
+....++.+...++.++.. ..+.+. ...++..+...+...++.++. +++.|| ++..+.+.++.++..
T Consensus 283 ~~~i~f~~~~~q~~~~l~~~~~~~~~~~~~g~~i~~~~~~s~n~i~iil~~p~~~~~~~~l~~r-~~~~~~~~~G~~l~~ 361 (500)
T PRK09584 283 LEAIIFFVLYSQMPTSLNFFAIRNVEHSILGIAVEPEQYQALNPFWIMIGSPILAAIYNKMGDR-LPMPHKFAIGMVLCS 361 (500)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHhccccccceEECHHHHHHHhHHHHHHHHHHHHHHHHHhCcC-CCcHHHHHHHHHHHH
Confidence 4444555555555555443 111111 113444444444444554555 666777 677788899999999
Q ss_pred HHHHHHHHhhhccccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhhchhhhhhhhhhccCCCCCchhhhhh
Q 007580 148 AGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHL 227 (597)
Q Consensus 148 ~g~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~R 227 (597)
++.+.+++...... +....+...++...++.++|.+...|...+++.+..|++. |
T Consensus 362 l~f~~l~~~~~~~~-------------------~~~~vs~~~~~~~~~l~~~ge~~~~p~g~s~~~~~aP~~~------r 416 (500)
T PRK09584 362 GAFLVLPLGAKFAN-------------------DAGIVSVNWLIASYGLQSIGELMISGLGLAMVAQLVPQRL------M 416 (500)
T ss_pred HHHHHHHHHHHhcC-------------------CCCccCHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCcHHH------H
Confidence 99888776632110 0001345578888999999999999999999999999999 9
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhhh----------ccchHHHHHHHHHHHHHHHHHHHHhcC
Q 007580 228 DRFFNFFYLSVTVGAIVAFTLVVYIQM----------EHGWGSAFGALAIAMGISNMLFFIGTP 281 (597)
Q Consensus 228 ~~~~~~~~~~~~lg~~l~p~i~~~i~~----------~~gw~~~f~i~~~~~~~~~~~~~~~~~ 281 (597)
++.++.+++...+|+.++..+.++... ..+..+.|...+++.++..++++...+
T Consensus 417 g~~~g~~~l~~a~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~a~~~~~~~~ 480 (500)
T PRK09584 417 GFIMGSWFLTTAGAALIAGYVANLMAVPDNVTDPLMSLEVYGRVFLQIGIATAVIAVLMLLTAP 480 (500)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccccccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999988888888877776653321 123667777766655544444444333
No 227
>PRK15403 multidrug efflux system protein MdtM; Provisional
Probab=98.26 E-value=8.6e-05 Score=79.72 Aligned_cols=169 Identities=12% Similarity=0.060 Sum_probs=107.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHhhhhHHHhhcccchHHHHHHHHHHHHHH
Q 007580 70 AALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAG 149 (597)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~lsD~~~GR~~~~~~~~~l~~~g 149 (597)
.++...+..++....++.....+|.|+++.+|.+..+.++.......+..++..+.+.+.++ .++++.+.....+..++
T Consensus 219 ~~~~~~l~~~~~~~~~~~~~~~~P~~l~~~~g~s~~~~gl~~~~~~~~~~i~~~l~~~~~~~-~~~~~~~~~~~~~~~ig 297 (413)
T PRK15403 219 LFLTGAATLSLSYIPMMSWVAVSPVILIDAGGMTTSQFAWTQVPVFGAVIVANAIVARFVKD-PTEPRFIWRAVPIQLVG 297 (413)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhChHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcc-CCchhHHHHHHHHHHHH
Confidence 34445455555666667777778889999999999999988777777777777777776544 24444443333444444
Q ss_pred HHHHHHhhhccccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhhchhhhhhhhhhccCCCCCchhhhhhhh
Q 007580 150 LTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDR 229 (597)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~R~~ 229 (597)
..++.+.... .+ .+...++++.++.++|.+...|+.....- .+.+.+ +++
T Consensus 298 ~~l~~~~~~~---~~--------------------~~~~~~~~~~~l~~~G~~~~~p~~~~~al--~~~~~~-----~G~ 347 (413)
T PRK15403 298 LALLIVGNLL---WP--------------------HVWLWSVLGTSLYAFGIGLIFPTLFRFTL--FSNNLP-----KGT 347 (413)
T ss_pred HHHHHHHHHH---cc--------------------ccHHHHHHHHHHHHHHHHHHhHHHHHHHh--ccCCCC-----CcH
Confidence 4444332110 00 23334567778889999888888875332 222211 567
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhccchHHHHHHHHHHHH
Q 007580 230 FFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMG 270 (597)
Q Consensus 230 ~~~~~~~~~~lg~~l~p~i~~~i~~~~gw~~~f~i~~~~~~ 270 (597)
..++++.....+..+++.+.+++.++ +-++.|.+...+..
T Consensus 348 a~a~~~~~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~ 387 (413)
T PRK15403 348 VSASLNMVILMVMAVSVEIGRWLWFN-GGRLPFHLLAVVAG 387 (413)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHc-CCchHHHHHHHHHH
Confidence 77777777778888888899988765 55666665555443
No 228
>KOG3762 consensus Predicted transporter [General function prediction only]
Probab=98.25 E-value=0.00013 Score=77.64 Aligned_cols=90 Identities=13% Similarity=0.256 Sum_probs=68.8
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHH-HHHHHHHHHHHHHHhhhccCCCCCCCCCcccc
Q 007580 463 LSAYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPDAMKSIGSAYAALA-GGLGCFAASILNSIIKSVTGNPKKGQPNWLAQ 541 (597)
Q Consensus 463 ~s~~~l~~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~gl~~~~-~~lg~~lg~~l~~~v~~~~g~~~~~~~~w~~~ 541 (597)
.++|..++.-++.|+..+......-+++...+|++.|.++.++.... -++|-.+|+++.+.+....+
T Consensus 457 ~n~W~vLPieilqgit~aliWaa~~sY~s~vaPp~l~at~Q~l~~g~f~GlG~g~GslIGG~~v~~fg------------ 524 (618)
T KOG3762|consen 457 QNPWMVLPIEILQGITHALIWAAIISYASHVAPPGLRATAQGLLQGIFHGLGKGLGSLIGGFVVERFG------------ 524 (618)
T ss_pred cCchheeeHHHHHHHHHHHHHHHHHHHHHhhCCCcchHHHHHHHHHHhcccCcchhhhhhhhhheeeh------------
Confidence 45566667778999999999999999999999999999999998754 46888888888887665443
Q ss_pred CCCCcchhHHHHHHHHHHHHHHHHHHHhh
Q 007580 542 NINTGRFDYLYWLLAVLSVINFCAFLYSA 570 (597)
Q Consensus 542 ~l~~~~~~~~f~~~a~l~~l~~~~~~~~~ 570 (597)
-...|+.+++.+++.++++...-
T Consensus 525 ------~~ttf~~~giAcl~~l~~~~~iq 547 (618)
T KOG3762|consen 525 ------ARTTFRIFGIACLVTLALFISIQ 547 (618)
T ss_pred ------hHHHHHHHHHHHHHHHHHHHHhh
Confidence 13467777777776666555443
No 229
>TIGR00880 2_A_01_02 Multidrug resistance protein.
Probab=98.24 E-value=3.8e-05 Score=67.78 Aligned_cols=89 Identities=18% Similarity=0.337 Sum_probs=71.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCCCCCccccCC
Q 007580 464 SAYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPDAMKSIGSAYAALAGGLGCFAASILNSIIKSVTGNPKKGQPNWLAQNI 543 (597)
Q Consensus 464 s~~~l~~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~gl~~~~~~lg~~lg~~l~~~v~~~~g~~~~~~~~w~~~~l 543 (597)
+.+.+....++.+++.....+....++.+..|++.|+.++++.+....+|..+++.+.+.+.+..+ |
T Consensus 50 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~--------~----- 116 (141)
T TIGR00880 50 NITVLIIARFLQGFGAAFALVAGAALIADIYPPEERGVALGLMSAGIALGPLLGPPLGGVLAQFLG--------W----- 116 (141)
T ss_pred cHHHHHHHHHHHHHHHHHHHHhHHHHHHHHCChhhhhHHHHHHHHhHHHHHHHhHHhHHHHhcccc--------h-----
Confidence 444566667888888888899999999999999999999999999999999999999988765332 3
Q ss_pred CCcchhHHHHHHHHHHHHHHHHHHHhh
Q 007580 544 NTGRFDYLYWLLAVLSVINFCAFLYSA 570 (597)
Q Consensus 544 ~~~~~~~~f~~~a~l~~l~~~~~~~~~ 570 (597)
++.|++.+.+.++..++.+++.
T Consensus 117 -----~~~~~~~~~~~~~~~~~~~~~~ 138 (141)
T TIGR00880 117 -----RAPFLFLAILALAAFILLAFLL 138 (141)
T ss_pred -----HHHHHHHHHHHHHHHHHHhhcC
Confidence 5677777777777766665543
No 230
>PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon. It is an integral membrane protein. The family includes other proteins form Rhodobacter eg. bacteriochlorophyll synthase.
Probab=98.23 E-value=0.00011 Score=76.49 Aligned_cols=168 Identities=15% Similarity=0.127 Sum_probs=137.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHhhhhHHHhhcccchHHHHHHHHHHHHHHHHHHHHhh
Q 007580 78 EMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCA 157 (597)
Q Consensus 78 ~~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~lsD~~~GR~~~~~~~~~l~~~g~~~~~~~~ 157 (597)
-++..++++.--..+-+|--+.||++..+.+.....+..+..++..+.|++..|-.+.+++..+++.+..++..+..++.
T Consensus 217 l~l~t~a~~~QD~iLEPygg~Vfgmsv~eTT~Lta~~~~G~L~G~~~~g~~l~~~~~~~~~a~~G~~~~~~~f~lii~a~ 296 (403)
T PF03209_consen 217 LFLGTLAFFMQDVILEPYGGEVFGMSVGETTRLTAFWGGGTLLGMLLAGFLLSRRLGKKRTAALGCLLGALAFALIILAG 296 (403)
T ss_pred HHHHHHHHHhhHHHcCCchhHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHHHHHH
Confidence 34456666666677788999999999999999999999999999999999988657888988899988888888777764
Q ss_pred hccccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhhchhhhhhhhhhccCCCCCchhhhhhhhHHHHHHHH
Q 007580 158 TMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLS 237 (597)
Q Consensus 158 ~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~R~~~~~~~~~~ 237 (597)
.. .+.+.+..+.+++|+|.|......-+..-|+..+++ -+.+++.|...
T Consensus 297 ~~-------------------------~~~~~~~~~~~l~G~g~G~f~vgals~mM~lt~~~~------aG~~mG~WGaa 345 (403)
T PF03209_consen 297 PL-------------------------GSPWLFRPGVFLLGLGNGLFTVGALSLMMDLTSAGR------AGLFMGAWGAA 345 (403)
T ss_pred hc-------------------------ccchHHHHHHHHHHHhhhHHHHHHHHHHHhCCCCcc------hhHHHHHHHHH
Confidence 32 345788899999999999999888888999998888 78999999999
Q ss_pred HHHHHHHHHHHHHHhhhc----------cchHHHHHHHHHHHHHHHHHH
Q 007580 238 VTVGAIVAFTLVVYIQME----------HGWGSAFGALAIAMGISNMLF 276 (597)
Q Consensus 238 ~~lg~~l~p~i~~~i~~~----------~gw~~~f~i~~~~~~~~~~~~ 276 (597)
..+...+|..++|.+.|. .+|..+|.+-++..++++.+.
T Consensus 346 QA~A~Glg~~~GG~~~D~~~~~~~~~~~~aY~~VF~lEa~ll~~a~~ll 394 (403)
T PF03209_consen 346 QAIARGLGTFLGGALRDLVRALFGNSPALAYGVVFALEAVLLLAALVLL 394 (403)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999877552 346666776666665555443
No 231
>PF01770 Folate_carrier: Reduced folate carrier; InterPro: IPR002666 The reduced folate carrier (a transmembrane glycoprotein) transports reduced folate into mammalian cells via the carrier mediated mechanism (as opposed to the receptor mediated mechanism) it also transports cytotoxic folate analogues used in chemotherapy [], such as methotrexate (MTX). Mammalian cells have an absolute requirement for exogenous folates which are needed for growth, and biosynthesis of macromolecules [].; GO: 0005542 folic acid binding, 0008518 reduced folate carrier activity, 0006810 transport, 0016020 membrane
Probab=98.21 E-value=0.0023 Score=67.48 Aligned_cols=171 Identities=9% Similarity=-0.000 Sum_probs=111.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-hCCChHHHH-HHHHHHHHHHHHHhhhhHHHhhcccchHHHHHHHHHHHH
Q 007580 70 AALFIFGNEMAERMAYFGLSVNMVTFMFYV-MHKSFADSS-NAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYL 147 (597)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~-~~~s~~~a~-~~~~~~~~~~~~~~~~~G~lsD~~~GR~~~~~~~~~l~~ 147 (597)
...++++..|+..+-- .-+++.+|+++. .|++..+.. -+.=.+.-.+....++...+.|. +|-|++++++.+-..
T Consensus 6 ~~~llc~~gf~~~frP--sEPfl~~yL~~~~kn~T~~qv~~~i~Pv~tYSyl~~l~~vflltd~-l~Ykpviil~~~~~i 82 (412)
T PF01770_consen 6 ITLLLCLFGFFKEFRP--SEPFLTPYLTGPDKNFTEEQVNNEIYPVWTYSYLAFLLPVFLLTDY-LRYKPVIILQALSYI 82 (412)
T ss_pred HHHHHHHHHHHHhcCC--CCccchHHHcCCccCCCHHHHHHhhhhHHHHHHHHHHHHHHHHHHH-hhhhHHHHHHHHHHH
Confidence 4555555444433321 126778899987 899988876 34444555566667778999996 898999888888777
Q ss_pred HHHHHHHHhhhccccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhhchhhhhhhhhhccCCCCCchhhhhh
Q 007580 148 AGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHL 227 (597)
Q Consensus 148 ~g~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~R 227 (597)
+...++.+. .+...+-+..++.|++.+. ..+..+++=-..|+++ -
T Consensus 83 ~t~~lll~~----------------------------~sv~~mq~~q~~yg~~~a~-evay~sYiys~v~~~~------y 127 (412)
T PF01770_consen 83 ITWLLLLFG----------------------------TSVLAMQLMQFFYGLATAA-EVAYYSYIYSVVDKEH------Y 127 (412)
T ss_pred HHHHHHHHH----------------------------CcHHHHHHHHHHHHHHHHH-HHHHHHHheeecCHHH------H
Confidence 766666554 4566777778888877766 4455566656666655 4
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhhh--ccchHHHHHHHHHHHHHHHHHHHH
Q 007580 228 DRFFNFFYLSVTVGAIVAFTLVVYIQM--EHGWGSAFGALAIAMGISNMLFFI 278 (597)
Q Consensus 228 ~~~~~~~~~~~~lg~~l~p~i~~~i~~--~~gw~~~f~i~~~~~~~~~~~~~~ 278 (597)
.+..++...+..+|-.++.+++-.+.. ..++...+++......+++++.++
T Consensus 128 q~vts~~raa~l~g~~~s~~lgQllvs~~~~sy~~L~~isl~~~~~a~~~~~f 180 (412)
T PF01770_consen 128 QKVTSYTRAATLVGRFISSLLGQLLVSFGGVSYFQLNYISLASVSLALLIALF 180 (412)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 555666666666676666666655544 345666777776666666655444
No 232
>COG0738 FucP Fucose permease [Carbohydrate transport and metabolism]
Probab=98.20 E-value=7.1e-05 Score=77.29 Aligned_cols=155 Identities=13% Similarity=0.075 Sum_probs=118.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHhhhhHHHhhcccchHHHHHHHHHHHHHHH
Q 007580 71 ALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGL 150 (597)
Q Consensus 71 ~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~lsD~~~GR~~~~~~~~~l~~~g~ 150 (597)
...-.+..|+.--+-..+.++++.|+.+..|++..+++..++.+..+..+|.+++-++-.| +-..|.+.+..++-.+-+
T Consensus 238 ~~~gvl~~FlYVG~Eva~gsfl~~y~~~~~g~~~~~aa~~~s~~~~~~~vGRFig~~lm~~-~~~~k~Laf~a~~~ill~ 316 (422)
T COG0738 238 LRLGVLAIFLYVGAEVAIGSFLVSYLEELLGLNEQQAAYYLSFFWVGFMVGRFIGSALMSR-IKPEKYLAFYALIAILLL 316 (422)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCHHHHHHHHHHHHHHHH
Confidence 3444445555555556677899999999899999999999999999999999999999998 788888888776655555
Q ss_pred HHHHHhhhccccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhhchhhhhhhhhhccCCCCCchhhhhhhhH
Q 007580 151 TGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRF 230 (597)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~R~~~ 230 (597)
+...++ .+ ..-+.+.++.|+..+.++|.+.+...+..|++.+ .++.
T Consensus 317 ~~~~l~----------------------------~g-~v~~~~l~~ig~F~simfPTIfslal~~l~~~ts-----~~s~ 362 (422)
T COG0738 317 LAVALI----------------------------GG-VVALYALFLIGLFNSIMFPTIFSLALKNLGEHTS-----VGSG 362 (422)
T ss_pred HHHHHh----------------------------cC-hHHHHHHHHHHHHhHHHHHHHHHHHHhccCcccc-----ccce
Confidence 555544 22 2344556789999999999999999999995442 2222
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhccchHHHHH
Q 007580 231 FNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFG 263 (597)
Q Consensus 231 ~~~~~~~~~lg~~l~p~i~~~i~~~~gw~~~f~ 263 (597)
.-....+|+++-|.+-|++.|..|-...+.
T Consensus 363 ---~l~maivGGAiiP~l~G~i~d~~g~~~~~~ 392 (422)
T COG0738 363 ---LLVMAIVGGAIIPPLQGVIADMFGIQLTFL 392 (422)
T ss_pred ---eeeeheecchHHHHHHHHHHHhhhhHHHHH
Confidence 222345899999999999999998877766
No 233
>KOG3762 consensus Predicted transporter [General function prediction only]
Probab=98.11 E-value=1.3e-05 Score=85.14 Aligned_cols=173 Identities=9% Similarity=-0.058 Sum_probs=133.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHhhhhHHHhhcccchHHHHHHHHHHHHHHHHHHH
Q 007580 75 FGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGIT 154 (597)
Q Consensus 75 ~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~lsD~~~GR~~~~~~~~~l~~~g~~~~~ 154 (597)
++..++..++...+.+++--+++ +.+-.+...|.....-..+-.+.-++.++|..+ +|+-+++.+++..+++=.+...
T Consensus 377 f~~av~mG~g~~lv~tFLfWHle-d~~~~~~LfGv~~a~~~~gEI~~~ffs~klI~k-iGHv~v~~lgLa~~~~Rf~~~S 454 (618)
T KOG3762|consen 377 FFVAVVMGAGVGLVFTFLFWHLE-DLGGIKTLFGVVSALCHAGEILFYFFSFKLIEK-IGHVNVMYLGLACNVGRFLYYS 454 (618)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHh-hcCCcceeeeehhhhhccchHHHHHHHHHHHHH-hcccceeeehhhHHHHHHHHHH
Confidence 33444444554555555544554 455555555544444455667777888999998 8999999999888887777777
Q ss_pred HhhhccccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhhchhhhhhhhhhccCCCCCchhhhhhhhHHHHH
Q 007580 155 LCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFF 234 (597)
Q Consensus 155 ~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~R~~~~~~~ 234 (597)
.. +|.++.+..-+++|+..+.++.++.+++++..|++- |.++.++.
T Consensus 455 ~L----------------------------~n~W~vLPieilqgit~aliWaa~~sY~s~vaPp~l------~at~Q~l~ 500 (618)
T KOG3762|consen 455 YL----------------------------QNPWMVLPIEILQGITHALIWAAIISYASHVAPPGL------RATAQGLL 500 (618)
T ss_pred Hh----------------------------cCchheeeHHHHHHHHHHHHHHHHHHHHHhhCCCcc------hHHHHHHH
Confidence 65 688899999999999999999999999999999999 88988885
Q ss_pred H-HHHHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHhcCcc
Q 007580 235 Y-LSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGTPLY 283 (597)
Q Consensus 235 ~-~~~~lg~~l~p~i~~~i~~~~gw~~~f~i~~~~~~~~~~~~~~~~~~~ 283 (597)
. ....+|-.+|.+|+|.+.+.+|-|..|.+.++.+++.++++....+..
T Consensus 501 ~g~f~GlG~g~GslIGG~~v~~fg~~ttf~~~giAcl~~l~~~~~iq~~l 550 (618)
T KOG3762|consen 501 QGIFHGLGKGLGSLIGGFVVERFGARTTFRIFGIACLVTLALFISIQLLL 550 (618)
T ss_pred HHHhcccCcchhhhhhhhhheeehhHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence 4 455888999999999999999999999998888887777766554433
No 234
>PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters. Two such families have been found to occur ubiquitously in all classifications of living organisms. These are the ATP-binding cassette (ABC) superfamily and the major facilitator superfamily (MFS), also called the uniporter-symporter-antiporter family. While ABC family permeases are in general multicomponent primary active transporters, capable of transporting both small molecules and macromolecules in response to ATP hydrolysis the MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Although well over 100 families of transporters have now been recognised and classified, the ABC superfamily and MFS account for nearly half of the solute transporters encoded within the genomes of microorganisms. They are also prevalent in higher organisms. The importance of these two families of transport systems to living organisms can therefore not be overestimated []. The MFS was originally believed to function primarily in the uptake of sugars but subsequent studies revealed that drug efflux systems, Krebs cycle metabolites, organophosphate:phosphate exchangers, oligosaccharide:H1 symport permeases, and bacterial aromatic acid permeases were all members of the MFS. These observations led to the probability that the MFS is far more widespread in nature and far more diverse in function than had been thought previously. 17 subgroups of the MFS have been identified []. Evidence suggests that the MFS permeases arose by a tandem intragenic duplication event in the early prokaryotes. This event generated a 2-transmembrane-spanner (TMS) protein topology from a primordial 6-TMS unit. Surprisingly, all currently recognised MFS permeases retain the two six-TMS units within a single polypeptide chain, although in 3 of the 17 MFS families, an additional two TMSs are found []. Moreover, the well-conserved MFS specific motif between TMS2 and TMS3 and the related but less well conserved motif between TMS8 and TMS9 [] prove to be a characteristic of virtually all of the more than 300 MFS proteins identified.; GO: 0022857 transmembrane transporter activity, 0055085 transmembrane transport, 0016021 integral to membrane
Probab=98.07 E-value=2.6e-08 Score=108.00 Aligned_cols=189 Identities=14% Similarity=0.086 Sum_probs=111.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHhhhhHHHhhcccchHHHHHHHHHHHHHHH
Q 007580 71 ALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGL 150 (597)
Q Consensus 71 ~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~lsD~~~GR~~~~~~~~~l~~~g~ 150 (597)
....+...++..+..+....+..+++.+..+.+.. -.......+...++.+++.++.|| +|||++++++.++..+..
T Consensus 254 ~~~~~~l~~~~~~~g~~~~~~~~~~i~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~-~GRr~~~i~~~~~~~~~~ 330 (451)
T PF00083_consen 254 LLIALLLQFFQQFSGINFIFYYSPSIFENAGISNS--FLATLILGLVNFLGTLLAIFLIDR-FGRRKLLIIGLLLMAICS 330 (451)
T ss_pred ccccccccccccccccccccccccccccccccccc--cccccccccccccccccccccccc-cccccccccccccccccc
Confidence 34444444444333333334445556666777665 222223335556677788899999 899999999988777766
Q ss_pred HHHHHhhhccccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhhchhhhhhhhhhccCCCCCchhhhhhhhH
Q 007580 151 TGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRF 230 (597)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~R~~~ 230 (597)
+.++..... .+. ++ +..+...+............+..+....+.+|.||.+. |.++
T Consensus 331 ~~~~~~~~~---~~~--------------~~-~~~~~~~i~~~~l~~~~~~~g~~~~~~~~~~ElfPt~~------R~~~ 386 (451)
T PF00083_consen 331 LILGIIFFL---GVS--------------SS-SWWSILSIVFLALFFAFFSLGWGPLPWIYTAELFPTKV------RSTG 386 (451)
T ss_pred ccccccccc---ccc--------------cc-cccccccceeeeeccccccccccccccccccccccccc------cccc
Confidence 665411000 000 00 00111121111111122222445666688899999999 9999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHhcCccccc
Q 007580 231 FNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGTPLYRHR 286 (597)
Q Consensus 231 ~~~~~~~~~lg~~l~p~i~~~i~~~~gw~~~f~i~~~~~~~~~~~~~~~~~~~~~~ 286 (597)
.++.+....+++.++|.+..++.+..+-...|.+.+...++..+..++..|+.+++
T Consensus 387 ~~~~~~~~~i~~~i~~~~~~~~~~~~~~~~~~~i~~~~~~i~~i~~~~~lpET~g~ 442 (451)
T PF00083_consen 387 IGLSYAVGRIGGFIIPFLFPYLFNNLGGWGVFLIFAGVCLIAIIFVYFFLPETKGK 442 (451)
T ss_pred cccccccccccccccccccccccccccccccchhhHHHHHHHHhheeEEEeeCCCC
Confidence 99988888899999998888887776634455555655555655556666655443
No 235
>PF02487 CLN3: CLN3 protein; InterPro: IPR003492 Batten's disease, the juvenile variant of neuronal ceroid lipofuscionosis (NCL), is a recessively inherited disorder affecting children of 5-10 years of age. The disease is characterised by progressive loss of vision, seizures and psychomotor disturbances. Biochemically, the disease is characterised by lysosomal accumulation of hydrophobic material, mainly ATP synthase subunit C, largely in the brain but also in other tissues. The disease is fatal within a decade []. Mutations in the CLN3 gene are believed to cause Batten's disease []. The CLN3 gene, with a predicted 438-residue product, maps to chromosome p16p12.1. The gene contains at least 15 exons spanning 15kb and is highly conserved in mammals []. A 1.02kb deletion in the CLN3 gene, occurring in either one or both alleles, is found in 85% of Batten disease chromosomes causing a frameshift generating a predicted translated product of 181 amino acid residues [, ]. 22 other mutations, including deletions, insertions and point mutations, have been reported. It has been suggested that such mutations result in severely truncated CLN3 proteins, or affect its structure/conformation [, ]. CLN3 proteins, which are believed to associate in complexes, are heavily glycosylated lysosomal membrane proteins [], containing complex Asn-linked oligosaccharides []. Extensive glycosylation is important for the stability of these lysosomal proteins in the highly hydrolytic lysosomal lumen. Lysosomal sequestration of active lysosomal enzymes, transport of degraded molecules from the lysosomes, and fusion and fission between lysosomes and other organelles. The CLN3 protein is a 43kDa, highly hydrophobic, multi-transmembrane (TM), phosphorylated protein []. Hydrophobicity analysis predicts 6-9 TM segments, suggesting that CLN3 is a TM protein that may function as a chaperone or signal transducer. The majority of putative phosphorylation sites are found in the N-terminal domain, encompassing 150 residues []. Phosphorylation is believed to be important for membrane compartment interaction, in the formation of functional complexes, and in regulation and interactions with other proteins []. CLN3 contains several motifs that may undergo lipid post-translational modifications (PTMs). PTMs contribute to targeting and anchoring of modified proteins to distinct biological membranes []. There are three general classes of lipid modification: N-terminal myristoylation, C-terminal prenylation, and palmitoylation of cysteine residues. Such modifications are believed to be a common form of PTM occurring in 0.5% of all cellular proteins, including brain tissue []. The C terminus of the CLN3 contains various lipid modification sites: C435, target for prenylation; G419, target for myristoylation; and C414, target for palmitoylation []. Prenylation results in protein hydrophobicity, influences interaction with upstream regulatory proteins and downstream effectors, facilitates protein-protein interaction (multisubunit assembly) and promotes anchoring to membrane lipids. The prenylation motif, Cys-A-A-X, is highly conserved within CLN3 protein sequences of different species []. Species with known CLN3 protein homologues include: Homo sapiens, Canis familiaris, Mus musculus, Saccharomyces cerevisiae and Drosophila melanogaster.; GO: 0016020 membrane
Probab=98.05 E-value=0.0081 Score=63.28 Aligned_cols=63 Identities=16% Similarity=0.209 Sum_probs=53.3
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 007580 463 LSAYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPDAMKSIGSAYAALAGGLGCFAASILNSIIK 525 (597)
Q Consensus 463 ~s~~~l~~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~gl~~~~~~lg~~lg~~l~~~v~ 525 (597)
.+++.++...+..|+-.+..+......+.+..|++.|-.++|.....-++|..++.++.-.+.
T Consensus 333 psi~ivf~lif~eGLlGGa~YVNtF~~I~~~~~~~~REFslg~vsvsds~GI~lAgll~l~le 395 (402)
T PF02487_consen 333 PSIWIVFVLIFYEGLLGGASYVNTFYRISEEVPPEDREFSLGAVSVSDSLGILLAGLLGLPLE 395 (402)
T ss_pred hHHHHHHHHHHHHHHhhhHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 356666667777888889999999999999999999999999999999999999888765543
No 236
>KOG1330 consensus Sugar transporter/spinster transmembrane protein [Carbohydrate transport and metabolism]
Probab=98.03 E-value=2.1e-06 Score=89.72 Aligned_cols=124 Identities=18% Similarity=0.170 Sum_probs=99.0
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhcCccccccCcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcch
Q 007580 417 SQLQRVGIGLAVSILSVIWAGIFERYRRNYAISHGYEFSFLTAMPDLSAYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPD 496 (597)
Q Consensus 417 ~~~~~i~~G~~l~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~s~~~l~~~~~l~g~g~~~~~~~~~~~~~~~~P~ 496 (597)
++...+.+|..+-.++++..++. ...|.+.+.-.+.|+||....|...+++++.+|+
T Consensus 96 NR~~v~~vG~~iW~~Av~~~~fs-----------------------~~Fwq~~l~R~~vGiGeAs~~~ia~s~IaD~f~~ 152 (493)
T KOG1330|consen 96 NRKRVIAVGIFIWTLAVFASGFS-----------------------NHFWQVLLCRGFVGIGEASYSPIAPSLIADSFPD 152 (493)
T ss_pred CcceEEeeHHHHHHHHHHHHHHH-----------------------HHHHHHHHHHHHhccchhhhcccchhHhhhcCcc
Confidence 34445667777777776666554 2445556667889999999999999999999999
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCCCCCccccCCCCcchhHHHHHHHHHHHHHHHHHHHhhhccccc
Q 007580 497 AMKSIGSAYAALAGGLGCFAASILNSIIKSVTGNPKKGQPNWLAQNINTGRFDYLYWLLAVLSVINFCAFLYSAYRYKYR 576 (597)
Q Consensus 497 ~~rg~~~gl~~~~~~lg~~lg~~l~~~v~~~~g~~~~~~~~w~~~~l~~~~~~~~f~~~a~l~~l~~~~~~~~~~~~~~~ 576 (597)
+.|+++.+++++...+|+.+|-.....+.+.++ .| .+.|++.++++++..++..++.++-.++
T Consensus 153 ~~Rs~~~~ify~~ipvGsglG~vvgs~va~~~~-------~W----------r~af~~~avl~vi~~~L~~~f~~eP~rg 215 (493)
T KOG1330|consen 153 DKRSRVLGIFYFAIPVGSGLGYVVGSVVASLTF-------WW----------RWAFRGSAVLGVIVGLLVFLFVREPERG 215 (493)
T ss_pred hhhhHHHHHhhhhcccccceeEEeeeeeccCcc-------ce----------EEEEEeehHHHHHHHHHHHhhccCcccc
Confidence 999999999999999999999988887776654 26 6789999999999999888888766554
Q ss_pred ccCC
Q 007580 577 SEQK 580 (597)
Q Consensus 577 ~~~~ 580 (597)
..++
T Consensus 216 a~~~ 219 (493)
T KOG1330|consen 216 ARDE 219 (493)
T ss_pred cccc
Confidence 4443
No 237
>TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter. This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot.
Probab=97.98 E-value=0.00057 Score=74.18 Aligned_cols=207 Identities=14% Similarity=-0.031 Sum_probs=141.5
Q ss_pred ccCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-hCCChH------HH---H-HHHHHHHHHHHHHhhhhHHHhhc
Q 007580 63 SKTGGWIAALFIFGNEMAERMAYFGLSVNMVTFMFYV-MHKSFA------DS---S-NAVNNFLGISQASSVLGGFLADA 131 (597)
Q Consensus 63 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~-~~~s~~------~a---~-~~~~~~~~~~~~~~~~~G~lsD~ 131 (597)
..++.++.++.++..+|+.-++.+.+..+...|+.++ ++-++. +. + +....+.+...+..++--++.++
T Consensus 252 ~~~~mP~~m~~l~~vqffsW~a~f~~~~y~T~~vg~~v~~~~~~~~~~y~~gvr~G~~~l~~~s~~~~i~s~~l~~l~~~ 331 (477)
T TIGR01301 252 AFKYLPRPVWILLLVTCLNWIAWFPFILFDTDWMGREVYGGSVNQGAKYDDGVRAGAFGLMLNSVVLGITSIGMEKLCRG 331 (477)
T ss_pred HHHHCCHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHcCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4467788999999999999999999988888888753 443221 11 2 34444555555666677788898
Q ss_pred ccc-hHHHHHHHHHHHHHHHHHHHHhhhccc-cCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhhchhhhhh
Q 007580 132 YLG-RYWTIAIFTTIYLAGLTGITLCATMKV-FMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVS 209 (597)
Q Consensus 132 ~~G-R~~~~~~~~~l~~~g~~~~~~~~~~~~-~~~~~~~c~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~ 209 (597)
+| ||++..++.++..++++...+...... ..+. ++ +...- .|+.......++...+.|+..+.....-.
T Consensus 332 -~g~~k~~~~~s~~~~~~~l~~~~~i~~~~~~~~~~----~~---~~~~~-~~~~~~~~~~l~~~~~~Gi~~A~~~siPf 402 (477)
T TIGR01301 332 -WGAGKRLWGIVNIILAICLAATVLVTYVAKNSRYY----DG---DGESL-PPPTGIKASALIVFAILGIPLAITYSIPF 402 (477)
T ss_pred -hccchhHHHHHHHHHHHHHHHHHHHHhhhhccccc----cc---ccccc-CcchhhHHHHHHHHHHhhHHHHHHHHHhH
Confidence 88 577779998888888888775432110 0000 00 00000 11111235566666789999999999999
Q ss_pred hhhhccCCCCCchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhccc--hHHHHHHHHHHHHHHHHHHHHhcCc
Q 007580 210 SFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHG--WGSAFGALAIAMGISNMLFFIGTPL 282 (597)
Q Consensus 210 ~~~ad~~~~~~~~~~~~R~~~~~~~~~~~~lg~~l~p~i~~~i~~~~g--w~~~f~i~~~~~~~~~~~~~~~~~~ 282 (597)
+++++..+++..+ .|..+++++.+..+...+..+..|.+.+..| -.+.+.+.++.++++.+..+...|+
T Consensus 403 al~s~~~~~~~~~----~G~~mgilN~~I~lpQii~sl~~g~~~~~~g~~~~~~~~~~gv~~~~aa~~~~~~~~~ 473 (477)
T TIGR01301 403 ALASIRSSNLGAG----QGLSMGVLNLAIVIPQIIVSLGSGPWDQLFGGGNLPAFVVGAVAAFVSGLLALILLPR 473 (477)
T ss_pred HHHHHHccccCCC----CcchhhHHHHHHHHHHHHHHHHHHHHHHHcCCCCeeHHHHHHHHHHHHHHHHHHhCCC
Confidence 9999999965411 6999999999999999999888887655444 5667777888777777766665554
No 238
>KOG2533 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]
Probab=97.98 E-value=5.6e-05 Score=82.16 Aligned_cols=165 Identities=13% Similarity=0.119 Sum_probs=105.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHhhhhHHHhhcc---cchHHHHHHHHHHH
Q 007580 70 AALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAY---LGRYWTIAIFTTIY 146 (597)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~lsD~~---~GR~~~~~~~~~l~ 146 (597)
.+|...+..++.....|++..++|.|+++..|++..+++.....+.++..++.+++|+++||. +.+|..+.....++
T Consensus 274 ~vw~~~l~~~~~~lv~~~~~~~lpl~l~~~~~~s~~~a~~ls~~~~~~g~v~~i~ag~lsdr~~~~~~~~~~~~~~~~~~ 353 (495)
T KOG2533|consen 274 GVWPFSLCYFFLKLVNYGFSYWLPLYLKSNGGYSELQANLLSTPYDVGGIVGLILAGYLSDRLKTIFARRLLFIVFLCLY 353 (495)
T ss_pred hHHHHHHHHHHHhhccccHHHHHHHHHHcCCCcChHHhccccchHHhhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 568888888999999999999999999986779999999999999999999999999999983 35665555555444
Q ss_pred HH-HHHHHHHhhhccccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhhchhhhhhhhhhccCCCCCchhhh
Q 007580 147 LA-GLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKT 225 (597)
Q Consensus 147 ~~-g~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~ 225 (597)
.+ |.+.+.... +......+.+....+.....++...-..+...+..
T Consensus 354 ~~~g~~~l~~~~----------------------------~~~~~~~~~~~~~~~~~~~~~~~~~w~s~~~~g~~----- 400 (495)
T KOG2533|consen 354 AIIGAISLLAAA----------------------------VLPGAYGAFLIGPYGLIATAIIALSWTSANLAGNT----- 400 (495)
T ss_pred HHHHHHHHHhhc----------------------------cchHHhHHHHhcchhhHHHHHHHHhhccccccchH-----
Confidence 33 433333321 11122222223333344444455555555554433
Q ss_pred hhhhHHHHHHHHHHHHHHHHH-HHHHHhhhccchHHHHHHHHH
Q 007580 226 HLDRFFNFFYLSVTVGAIVAF-TLVVYIQMEHGWGSAFGALAI 267 (597)
Q Consensus 226 ~R~~~~~~~~~~~~lg~~l~p-~i~~~i~~~~gw~~~f~i~~~ 267 (597)
+|-+..+.+..+.+.+++++| +.-+.....++|.+.|++...
T Consensus 401 k~~~~~~~~i~~~~s~~~~~~~~~~~~~ap~y~~~~~f~~~~~ 443 (495)
T KOG2533|consen 401 KALTTVSAIIDGTGSAGAISGQLFRSLDAPRYGWGAVFYMLVA 443 (495)
T ss_pred HhHHHHhhhhcchhHHHHhhhhhcccccCcchhhhhHHHHHHH
Confidence 144555555555544444444 444555555788888854433
No 239
>TIGR00788 fbt folate/biopterin transporter. The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity.
Probab=97.95 E-value=2.9e-05 Score=84.77 Aligned_cols=137 Identities=9% Similarity=-0.160 Sum_probs=108.1
Q ss_pred HHHhhCCChHHHHHHHHHHHHHHHHHhhhhHHHhhcccchHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCcccccccc
Q 007580 96 MFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDRISQL 175 (597)
Q Consensus 96 l~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~lsD~~~GR~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~c~~~~~~ 175 (597)
..+.+|+++...+.......++..++..+.+++.+| ++.|+++.++.++..++.....+.......... .
T Consensus 279 ~~~~lG~s~~~~G~~~~~~~v~~i~g~~~~~~~~~~-~~~r~~l~~~~~l~~~~~~~~~~l~~~~~~~~g---i------ 348 (468)
T TIGR00788 279 TTQCLPGGPSFSGMSKVVGNLGSLCGVGGYDRFLKT-FPYRLLFGVTTLLYTLSSLFDLILVKRWNLAFG---I------ 348 (468)
T ss_pred EcccCCCCcchhhhHHHHHHHHHHHHHHHHHHHHhh-CCHHHHHHHHHHHHHHHHhCceeeeeccccccC---C------
Confidence 345789999999999999999999999999999998 899999999999888777554322110000000 0
Q ss_pred cCCCCCccchhHHHHHHHHHHHHHhhhchhhhhhhhhhccCCCCCchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 007580 176 LGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQME 255 (597)
Q Consensus 176 ~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~R~~~~~~~~~~~~lg~~l~p~i~~~i~~~ 255 (597)
.+...++..-++.+++.+........++.+..|++. +++.++++....++|..+++.+++++.++
T Consensus 349 ---------~~~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~p~~~------egt~~al~~s~~~lg~~v~~~~gg~l~~~ 413 (468)
T TIGR00788 349 ---------SDEVFVLGDSIIAEVLAQLKFMPFLVLLARLCPSGC------ESSVFALLASILHLGSSVSGFLGVLLMET 413 (468)
T ss_pred ---------CCeeeeeehhHHHHHHHHHHHccHHHHHHHhCCCCc------eehHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 111234445667888888888888999999999999 99999999999999999999999999887
Q ss_pred cc
Q 007580 256 HG 257 (597)
Q Consensus 256 ~g 257 (597)
.|
T Consensus 414 ~g 415 (468)
T TIGR00788 414 IG 415 (468)
T ss_pred cC
Confidence 76
No 240
>KOG0254 consensus Predicted transporter (major facilitator superfamily) [General function prediction only]
Probab=97.88 E-value=0.00032 Score=77.60 Aligned_cols=197 Identities=13% Similarity=0.046 Sum_probs=107.6
Q ss_pred CCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHhhhhHHHhhcccchHHHHHHHHH
Q 007580 65 TGGWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTT 144 (597)
Q Consensus 65 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~lsD~~~GR~~~~~~~~~ 144 (597)
+..++.....++...+..+..+....+....+-+..+.+... .+..........++..++.++.|| +|||+.++.+..
T Consensus 290 ~~~~~~~~i~~~l~~fqq~tG~~~~~~Y~~~if~~~g~~~~~-~~~~~~~~~v~~~~t~~~~~lvd~-~gRr~lll~s~~ 367 (513)
T KOG0254|consen 290 PKVRKRLIIGLLLQLFQQLTGINYVFYYSTTIFKSAGLKSDT-FLASIILGVVNFLGTLVATYLVDR-FGRRKLLLFGAA 367 (513)
T ss_pred cchHHHHHHHHHHHHHHHHhCCceEEeehHHHHHhcCCCCch-HHHHHHHHHHHHHHHHHHHHHHHH-hccHHHHHHhHH
Confidence 345555555555555554443333333334445566665433 334444555666777777999999 799999999999
Q ss_pred HHHHHHHHHHHhhhccccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhhchhhhhhhhhhccCCCCCchhh
Q 007580 145 IYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYK 224 (597)
Q Consensus 145 l~~~g~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~ 224 (597)
.+.++.++++........... | ........+....+.......+..+....+.+|.||.+.
T Consensus 368 ~m~~~~~~~~~~~~~~~~~~~---~------------~~~~~~~~~~~~~~~v~~f~~g~g~v~w~~~sEifp~~~---- 428 (513)
T KOG0254|consen 368 GMSICLVILAVVGVFALYYPN---S------------SKGAGWLAIVFLCLFIFSFAIGWGPVPWVIVSEIFPLRL---- 428 (513)
T ss_pred HHHHHHHHHHHHHHHhccCCC---c------------ccchhHHHHHHHHHHHHHHhcccccchhhhhhccCcHhH----
Confidence 999999988876432111000 0 000112222222233334444445566678899999999
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHH-HHHHhcCccc
Q 007580 225 THLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNM-LFFIGTPLYR 284 (597)
Q Consensus 225 ~~R~~~~~~~~~~~~lg~~l~p~i~~~i~~~~gw~~~f~i~~~~~~~~~~-~~~~~~~~~~ 284 (597)
|+.+.++-.....+...+--...-.+.+..++...|+..+....+... ..+...++.+
T Consensus 429 --r~~~~s~~~~~n~~~~~~v~~~~~~~~~~~~~~~~f~~f~~~~~~~~~~fv~~~~pETk 487 (513)
T KOG0254|consen 429 --RSKGASLAVAVNWLWNFLISFFFPFITEALGIGGTFGYFGGICLLSLIIFVFFFVPETK 487 (513)
T ss_pred --HhhhHHHHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHheEEcccCC
Confidence 888888754444333332222222222322234556655555555554 3444444443
No 241
>PF12832 MFS_1_like: MFS_1 like family
Probab=97.83 E-value=0.00014 Score=57.97 Aligned_cols=68 Identities=18% Similarity=-0.024 Sum_probs=56.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHhhhhHHHhhcccchHHHHHHHHHH
Q 007580 76 GNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTI 145 (597)
Q Consensus 76 ~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~lsD~~~GR~~~~~~~~~l 145 (597)
...|+...+...+.++++.|+. +.|++..+.+.+.++..+...++++++|+++|| +||++.++....+
T Consensus 7 ~~yf~~f~~~g~~~Pfl~~~~~-~~Gl~~~~iGil~~i~~~~~~~~~pl~g~laDk-~~~~~~~l~~~~~ 74 (77)
T PF12832_consen 7 AFYFFYFAALGCLYPFLPLYLK-QLGLSPSQIGILSAIRPLIRFLAPPLWGFLADK-FGKRKVILLGSLF 74 (77)
T ss_pred HHHHHHHHHHHHHHhhhhHhhh-hcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HCccHHHHHHHHH
Confidence 3445555566677888899987 489999999999999999999999999999999 7988887766554
No 242
>KOG4332 consensus Predicted sugar transporter [Carbohydrate transport and metabolism]
Probab=97.80 E-value=0.00043 Score=67.41 Aligned_cols=154 Identities=17% Similarity=0.109 Sum_probs=94.7
Q ss_pred HHHHHHhhCCChHHHHHHHHHHHHHHHHHhhhhHHHhhcccchHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCccccc
Q 007580 93 VTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDRI 172 (597)
Q Consensus 93 ~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~lsD~~~GR~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~c~~~ 172 (597)
..|+.+.+++...+.+.....-.....+...+.|-|+|+ -|||+..+..++ ..+++.+.-..
T Consensus 60 vYyLYstYgFgkG~IgqLfiaGfgSsmLFGtivgSLaDk-qGRKracvtyci----tYiLsCiTKhS------------- 121 (454)
T KOG4332|consen 60 VYYLYSTYGFGKGDIGQLFIAGFGSSMLFGTIVGSLADK-QGRKRACVTYCI----TYILSCITKHS------------- 121 (454)
T ss_pred eeeeehhcCccCCccceeeecccchHHHHHHHHHHHHhh-hccccceeeehH----HHHHHHHhhcC-------------
Confidence 457778888888888866655556666677788999998 899997655544 44455554210
Q ss_pred ccccCCCCCccchhHHHHHHHHHHHHHhhhchhhhhhh-hhhccCCCCCchhhhhhhhHHHH-HHHHHHHHHHHHHHHHH
Q 007580 173 SQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSS-FGADQFDERSKDYKTHLDRFFNF-FYLSVTVGAIVAFTLVV 250 (597)
Q Consensus 173 ~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~-~~ad~~~~~~~~~~~~R~~~~~~-~~~~~~lg~~l~p~i~~ 250 (597)
+++-.++++|.+-|+..+.......+ +++|.-..+.- ++.....-|+= ..+.+.+-+.++.+.+.
T Consensus 122 ------------pqYkVLmVGR~LGGiaTsLLFSaFEsWliaEHnekr~F-eqqWls~TFskA~ffgNglvAiiaGlfgn 188 (454)
T KOG4332|consen 122 ------------PQYKVLMVGRVLGGIATSLLFSAFESWLIAEHNEKRGF-EQQWLSVTFSKAVFFGNGLVAIIAGLFGN 188 (454)
T ss_pred ------------CceEEEeehhhhhhHHHHHHHHHHHHHHHHHhhhccCC-hHhhhhHHHHHHHHhhccHHHHHHHHHHH
Confidence 35567899999999999988777655 45665533321 11112222222 22344455556666666
Q ss_pred Hhhhcc--chHHHHHHHHHHHHHHHHHHH
Q 007580 251 YIQMEH--GWGSAFGALAIAMGISNMLFF 277 (597)
Q Consensus 251 ~i~~~~--gw~~~f~i~~~~~~~~~~~~~ 277 (597)
++.+.+ |.-.+|-..+...+++..+.+
T Consensus 189 ~lvd~~slGPVAPFdAAacfLaigmAvil 217 (454)
T KOG4332|consen 189 LLVDTFSLGPVAPFDAAACFLAIGMAVIL 217 (454)
T ss_pred HHHHHhccCCCCchHHHHHHHHHHHHHHH
Confidence 676654 456667655554455444433
No 243
>TIGR00805 oat sodium-independent organic anion transporter. Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange.
Probab=97.76 E-value=0.0005 Score=77.88 Aligned_cols=179 Identities=11% Similarity=0.053 Sum_probs=119.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHH-HHHHHhhhhHHHhhcccc--hHHHHHHHHHHH
Q 007580 70 AALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLG-ISQASSVLGGFLADAYLG--RYWTIAIFTTIY 146 (597)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~-~~~~~~~~~G~lsD~~~G--R~~~~~~~~~l~ 146 (597)
.++...+..++....++++..++|.|+++.+|+++.+++++.....+ +..++.+++|+++|| ++ .|+++.++.++.
T Consensus 331 ~f~~~~l~~~~~~~~~~~~~~~lP~yl~~~~g~s~~~ag~l~~~~~i~~~~vG~~l~G~l~~r-~~~~~~~~~~~~~~~~ 409 (633)
T TIGR00805 331 IYMLVILAQVIDSLAFNGYITFLPKYLENQYGISSAEANFLIGVVNLPAAGLGYLIGGFIMKK-FKLNVKKAAYFAICLS 409 (633)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHhhhhhhhHHHHHHhhhhheeee-ecccHHHHHHHHHHHH
Confidence 56777778888899999999999999999999999999988887665 678999999999999 77 456777777666
Q ss_pred HHHHHHHHHhhhc------------cccC----CCCC-ccccc---c--------ccc----------------------
Q 007580 147 LAGLTGITLCATM------------KVFM----PNQD-NCDRI---S--------QLL---------------------- 176 (597)
Q Consensus 147 ~~g~~~~~~~~~~------------~~~~----~~~~-~c~~~---~--------~~~---------------------- 176 (597)
+++.+++.....+ +... .... .|+.+ + +++
T Consensus 410 ~~~~~~~~~~~~~~C~~~~~agv~~~y~~~~~~~~~~~~Cn~~C~C~~~~~~PVCg~~~~tY~SpC~AGC~~~~~~~~~~ 489 (633)
T TIGR00805 410 TLSYLLCSPLFLIGCESAPVAGVNNPSTDQSIYVENPTDCNRQCSCDSSFFDPVCGDNGLAYLSPCHAGCSMSVGTGSNM 489 (633)
T ss_pred HHHHHHHHHHHeecCCCCccceeeccCCCcccCCCChhccCCCCCCCCCCcccccCCCCCEEECccccCCCCccCCCCcc
Confidence 6665443310000 0000 0001 34311 0 000
Q ss_pred ------------------CCCCCccchhHHHHHHHHHHHHHhhhchhhhhhhhhhccCCCCCchhhhhhhhHHHHHH-HH
Q 007580 177 ------------------GSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFY-LS 237 (597)
Q Consensus 177 ------------------~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~R~~~~~~~~-~~ 237 (597)
+.|.+.=+..+..|++..++..+..+.........+-+..|+++ |..+.++.. +.
T Consensus 490 ~y~~CsCi~~~~~~~a~~g~C~~~C~~~~~~f~~~~~~~~~~~~~~~~p~~~i~lR~V~~~~------rs~alg~~~~~~ 563 (633)
T TIGR00805 490 VYTNCSCVQTPGNSSAKKGLCNPPCATSLLYFLILFIPLSFIAFITAVPLYMVLLRVVNPEE------KSLAIGLQWLCM 563 (633)
T ss_pred eecccccccCCCCCCCcCCCCCcccchhHHHHHHHHHHHHHHHHhccCchheEEeeccCccc------chHHhhHHHHHH
Confidence 11332221224445555555555555555556667778999999 999999944 45
Q ss_pred HHHHHHHHHHHHHHhhhc
Q 007580 238 VTVGAIVAFTLVVYIQME 255 (597)
Q Consensus 238 ~~lg~~l~p~i~~~i~~~ 255 (597)
-.+|.+-+|++-|++.|.
T Consensus 564 rllg~iP~pi~fG~~iD~ 581 (633)
T TIGR00805 564 RVFATIPAPILFGLLIDV 581 (633)
T ss_pred HHhcCCChhHHHhhhhhc
Confidence 577889999999999886
No 244
>PF06963 FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 This entry represents the solute carrier family 40 member 1 family of proteins, also known as Ferroportin 1. It is thought to be involved in iron export from duodenal epithelial cells and also in transfer of iron between maternal and fetal circulation. This family of proteins is known to be localised in the basolateral membrane of polarized epithelial cells [].; GO: 0005381 iron ion transmembrane transporter activity, 0034755 iron ion transmembrane transport, 0016021 integral to membrane
Probab=97.74 E-value=0.097 Score=56.11 Aligned_cols=194 Identities=9% Similarity=-0.120 Sum_probs=100.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHhhhhHHHhhcccchHHHHHHHHHHHHHHH
Q 007580 71 ALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGL 150 (597)
Q Consensus 71 ~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~lsD~~~GR~~~~~~~~~l~~~g~ 150 (597)
.+.+....++.+++--..--..+.|+.+-+.-+.--.+..--.-.+...++.+.-|...|| .-|.+++..+.++.-+..
T Consensus 4 ~~~Ly~sh~ls~w~dR~w~Fa~~L~L~~i~p~sLl~~siygl~~~~~~~~f~~~vG~~iD~-~~Rl~~~~~~l~~Qn~sv 82 (432)
T PF06963_consen 4 LWRLYLSHFLSTWGDRMWEFAVPLFLISIFPGSLLPVSIYGLVRSLSAILFGPWVGRWIDR-SPRLKVIRTSLVVQNLSV 82 (432)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHhhHHHHHHHhC-CcchhhHHHHHHHHHHHH
Confidence 4555566666666655444555777776654444333333333455666677778888999 689999888877765555
Q ss_pred HHHHHhhhccccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhhchhhhhhhhhhccCCCCCchhhhhhhhH
Q 007580 151 TGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRF 230 (597)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~R~~~ 230 (597)
+..+.........++ ...+ ........+.+...+..+.--+.....-++=-|+...=..++...+.+.
T Consensus 83 ~~s~~~~~~l~~~~~-----------~~~~-~~~~~~~l~~~~~~~~~i~~Las~~~~iavERDWVvvi~~~~~~~La~~ 150 (432)
T PF06963_consen 83 AASCALFLLLLSYPS-----------SSSQ-SSWLFIALFALLILLGAIERLASIANTIAVERDWVVVIAGGDPGALARM 150 (432)
T ss_pred HHHHHHHHHHHhCCc-----------cccc-cchHHHHHHHHHHHHHHHHHHHHhhhhheeccchhhhhcCCChhhHHHH
Confidence 444433211110010 0000 0001112222222222222222222233333455432111111113333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHH
Q 007580 231 FNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFF 277 (597)
Q Consensus 231 ~~~~~~~~~lg~~l~p~i~~~i~~~~gw~~~f~i~~~~~~~~~~~~~ 277 (597)
-+...=.=.+--.+||++.|.+....|...+.++.+...++++++=+
T Consensus 151 NA~mRRIDL~ckllaPl~vG~l~t~~s~~~~~~~i~~~N~~S~~vEy 197 (432)
T PF06963_consen 151 NATMRRIDLFCKLLAPLFVGLLMTFASPVIAAIFIAGWNLASVFVEY 197 (432)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhccCHHHHHHHHHHHHHHHHHHHH
Confidence 33333333456788999999998888888887777776666665533
No 245
>KOG0252 consensus Inorganic phosphate transporter [Inorganic ion transport and metabolism]
Probab=97.74 E-value=2.7e-05 Score=81.38 Aligned_cols=178 Identities=15% Similarity=0.062 Sum_probs=122.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChHHHHH--------HHHHH-HHHHHHHhhhhHHHhhcccchHHHH
Q 007580 69 IAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSN--------AVNNF-LGISQASSVLGGFLADAYLGRYWTI 139 (597)
Q Consensus 69 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~--------~~~~~-~~~~~~~~~~~G~lsD~~~GR~~~~ 139 (597)
+.++..++..|+.-+++|+...+.- -+-+..++.+.+... ...+. ..++..+..++..+.|+ +|||+.-
T Consensus 304 ~~Llgt~~~WFllDiafy~~nL~~s-~I~~~ig~~~~~~~~~~~~~vA~~~~iia~~~~vPGyw~tv~~id~-iGRk~iq 381 (538)
T KOG0252|consen 304 KHLLGTAGTWFLLDIAFYGQNLFQS-VIFSAIGVIPSANTYHELFKVAEGNLIIAVCSTVPGYWFTVYFIDI-IGRKYIQ 381 (538)
T ss_pred HHHHHHHHHHHhhhhhhhccccHHH-HHHHhhccCCCcchHHHHHHHHHHHHHHHHHccCCceeEEEEEeeh-hhhHHHH
Confidence 5667777888888888888776643 334455654443322 11111 12223355667788998 8999999
Q ss_pred HHHHHHHHHHHHHHHHhhhccccCCCCCcccccccccCCCCCccchhHHHHHHH-HHHHHHhhhchhhhhhhhhhccCCC
Q 007580 140 AIFTTIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTV-LYITGFGAAGIRPCVSSFGADQFDE 218 (597)
Q Consensus 140 ~~~~~l~~~g~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~l~~~-~~l~g~g~g~~~~~~~~~~ad~~~~ 218 (597)
+.+.+++++....++..-.. . .+...+++. -+.+-++.-++......+-+|.||.
T Consensus 382 ~~GF~~~~i~~~~~~~~y~~----~--------------------~~~~Gf~v~y~l~~ff~NFGPn~ttfivpaE~FPa 437 (538)
T KOG0252|consen 382 LMGFFIMTIFFFVIAGPYNQ----L--------------------ENTIGFVVLYSLTFFFGNFGPNATTFIVPAEIFPA 437 (538)
T ss_pred HhhHHHHHHHHHHHcCCccc----c--------------------cccCceeehHHHHHHHHhcCCCceeEEeehhhchH
Confidence 99999888877777654210 0 011112211 1223344455556666777999999
Q ss_pred CCchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhh-----ccchHHHHHHHHHHHHHHHHHHHH
Q 007580 219 RSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQM-----EHGWGSAFGALAIAMGISNMLFFI 278 (597)
Q Consensus 219 ~~~~~~~~R~~~~~~~~~~~~lg~~l~p~i~~~i~~-----~~gw~~~f~i~~~~~~~~~~~~~~ 278 (597)
+. |+..-++.....-.|+++|...-.++.+ ..|.++.|++.+.++.+..+..++
T Consensus 438 rv------R~t~hGIsAA~GK~GAivg~~~F~~~t~~~yp~~~g~~~v~~i~~~~~~~gi~~T~l 496 (538)
T KOG0252|consen 438 RV------RSTCHGISAASGKAGAIVGAFGFLYLTDHNYPPNIGVRNVFIILAGCMLLGILFTLL 496 (538)
T ss_pred HH------hhhhhhHHHHhccchHHHHHHHhhHhhhccCCccccchHHHHHHHHHHHHhHheeEE
Confidence 99 9999999999999999999999999999 788999999999888777666544
No 246
>KOG0637 consensus Sucrose transporter and related proteins [Carbohydrate transport and metabolism]
Probab=97.55 E-value=0.00012 Score=76.51 Aligned_cols=165 Identities=12% Similarity=0.081 Sum_probs=120.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHhhhhHHHhhcc---cchHHHHHH-HHH
Q 007580 69 IAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAY---LGRYWTIAI-FTT 144 (597)
Q Consensus 69 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~lsD~~---~GR~~~~~~-~~~ 144 (597)
+.++.+..+.+-..+++..=.+++++|+. .+|++.+..+.+-..-.+...+.+++.|..|||. |||||.++. +.+
T Consensus 32 ~~li~v~~ia~Gvqf~wA~elsy~tPyl~-~lGvphk~~S~iw~~gPi~G~~vQP~vG~~SDrc~sr~GRRRPfI~~~s~ 110 (498)
T KOG0637|consen 32 RKLISVASIAAGVQFGWALELSYLTPYLQ-SLGVPHKWSSIIWLCGPLSGLLVQPLVGSASDRCTSRYGRRRPFILAGSL 110 (498)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccccHHHH-HcCCCcccccccccccccccceecccccccccccccccccccchHHHhhH
Confidence 55666666666666665555677788875 6899888888777777888899999999999984 798877664 455
Q ss_pred HHHHHHHHHHHhhhccccC-CCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhhchhhhhhhhhhccCCCCCchh
Q 007580 145 IYLAGLTGITLCATMKVFM-PNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDY 223 (597)
Q Consensus 145 l~~~g~~~~~~~~~~~~~~-~~~~~c~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~ 223 (597)
..+++.++...+..+..+. ++ .. .+.+......++++..+.=+..-..+...-++++|+...++
T Consensus 111 ~i~~~l~Lig~aaDig~~lgd~----------~~--~~~~~rai~~~~lg~~LLD~A~n~~qgp~ra~L~Dl~~~d~--- 175 (498)
T KOG0637|consen 111 LIAVSLFLIGYAADIGLLLGDN----------ER--KPVKPRAIVLFILGFWLLDVANNTLQGPCRALLADLARGDA--- 175 (498)
T ss_pred HHHHHHhhhhhHhhhhHHhcCC----------cc--cccchHHHHHHHHHhHHHHhhhhhhhhhHHHHHHHhccChh---
Confidence 6667777777775543221 11 01 11223556777788888888888889999999999998776
Q ss_pred hhhhhh-HHHHHHHHHHHHHHHHHHHHHHh
Q 007580 224 KTHLDR-FFNFFYLSVTVGAIVAFTLVVYI 252 (597)
Q Consensus 224 ~~~R~~-~~~~~~~~~~lg~~l~p~i~~~i 252 (597)
+.+ +.+++.+...+|..+|..+++|.
T Consensus 176 ---~~~~Ans~f~~f~avGnvLGY~~g~y~ 202 (498)
T KOG0637|consen 176 ---KKTRANSVFSFFMAVGNVLGYALGSYL 202 (498)
T ss_pred ---hhhccchhHHHHHHhcceeeeeccccc
Confidence 334 88889999999999998888754
No 247
>PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins. Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes [].
Probab=97.53 E-value=0.0018 Score=71.65 Aligned_cols=156 Identities=12% Similarity=0.029 Sum_probs=111.8
Q ss_pred cCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChH---HHHHHHHHHHHHHHHHhhhhHHHhhcccchHHHH-
Q 007580 64 KTGGWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFA---DSSNAVNNFLGISQASSVLGGFLADAYLGRYWTI- 139 (597)
Q Consensus 64 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~---~a~~~~~~~~~~~~~~~~~~G~lsD~~~GR~~~~- 139 (597)
..+.+|.+...+++.|+..+.+|++....|......++-+.. ..++....+.++..++.++.|++.-+ ++|.|-.
T Consensus 305 Lf~~~r~~~~~lvi~fi~G~~~~s~~~l~p~~~~~vf~~d~~~~~~~~~~s~~~~fg~~~g~~i~g~l~~~-ir~~Kw~l 383 (599)
T PF06609_consen 305 LFKDRRGFAALLVISFISGMNFFSVNILWPQQVVNVFGSDPISITEIGWISSPVGFGSCAGAVILGLLFSK-IRHIKWQL 383 (599)
T ss_pred HhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCcccceeehhhhhHHHHHHHHHHHHHHHHHH-ccchhHHH
Confidence 344556777878888888888898888888888877776653 45677777888888888899999987 7766655
Q ss_pred HHHHHHHHHHHHHHHHhhhccccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhhchhhhhhhhhhccCCCC
Q 007580 140 AIFTTIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDER 219 (597)
Q Consensus 140 ~~~~~l~~~g~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~~~~~ 219 (597)
+++.+++++++..++... + .|....+...++.|+|.|...........-..|++
T Consensus 384 i~~~~~~ta~~Gama~~~------~--------------------~n~~~~i~~~~l~g~giG~~~~~~~~~~ql~~p~~ 437 (599)
T PF06609_consen 384 IFGSVLMTAFCGAMAAVR------P--------------------DNKNAAIAFLVLAGFGIGGILVPAIVIAQLIVPDE 437 (599)
T ss_pred HHHHHHHHHHHHHHHHcc------C--------------------CCcchHHHHHHHHHHhHHHHHHHHHHeeEeeeCch
Confidence 466666666655555431 1 12233456667888888887777766666666777
Q ss_pred CchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHh
Q 007580 220 SKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYI 252 (597)
Q Consensus 220 ~~~~~~~R~~~~~~~~~~~~lg~~l~p~i~~~i 252 (597)
+ .+.+.++....-.+|+.+|..+-.-+
T Consensus 438 ~------ig~a~gL~~s~R~~GGsIg~aIy~~I 464 (599)
T PF06609_consen 438 D------IGTATGLTGSIRSIGGSIGYAIYNAI 464 (599)
T ss_pred H------HHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 6 88888888888888888777665444
No 248
>PF05978 UNC-93: Ion channel regulatory protein UNC-93; InterPro: IPR010291 The proteins in this family are represented by UNC-93 from Caenorhabditis elegans. UNC-93 colocalizes with SUP-10 and SUP-9 within muscle cells. Genetic studies suggest that these three proteins forms complex that coordinates muscle contraction. The function of UNC-93 is not known but is most likely an ion channel regulatory protein [].
Probab=97.51 E-value=0.0037 Score=57.09 Aligned_cols=108 Identities=17% Similarity=0.253 Sum_probs=82.9
Q ss_pred HHHHHHHHHHHHHhhhhHHHhhcccchHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCcccccccccCCCCCccchhHH
Q 007580 109 NAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQML 188 (597)
Q Consensus 109 ~~~~~~~~~~~~~~~~~G~lsD~~~GR~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~ 188 (597)
...++......+..++...+.++ +|.|++++++.+.+.+-...... ++..
T Consensus 41 ~slai~Y~~~~~s~l~~P~iv~~-lg~K~sm~lg~~~y~~y~~~~~~-----------------------------~~~~ 90 (156)
T PF05978_consen 41 YSLAILYGSFAISCLFAPSIVNK-LGPKWSMILGSLGYAIYIASFFY-----------------------------PNSY 90 (156)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHH-HhhHHHHHHHHHHHHHHHHHHHh-----------------------------hhHH
Confidence 34444555667777888889998 89999999999888765544432 3557
Q ss_pred HHHHHHHHHHHhhhchhhhhhhhhhccCCCCCchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHh
Q 007580 189 YLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYI 252 (597)
Q Consensus 189 ~l~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~R~~~~~~~~~~~~lg~~l~p~i~~~i 252 (597)
.++.+-.+.|+|.+..+.....++.+..++++ |++..+++......+..+|.++.-.+
T Consensus 91 ~l~~~s~l~G~~~a~lW~aqg~ylt~~s~~~~------~~~~~~ifw~i~~~s~i~G~~~~~~~ 148 (156)
T PF05978_consen 91 TLYPASALLGFGAALLWTAQGTYLTSYSTEET------IGRNTGIFWAIFQSSLIFGNLFLFFI 148 (156)
T ss_pred HHHHHHHHHhhhhHHhhHhhhHHHHHcCCHHH------HhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 78888899999999999999999999888777 88888887777777777666555433
No 249
>KOG3574 consensus Acetyl-CoA transporter [Inorganic ion transport and metabolism]
Probab=97.46 E-value=0.058 Score=55.64 Aligned_cols=158 Identities=14% Similarity=0.124 Sum_probs=93.0
Q ss_pred CCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHhhhhHHHhh-----cccchHHHH
Q 007580 65 TGGWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLAD-----AYLGRYWTI 139 (597)
Q Consensus 65 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~lsD-----~~~GR~~~~ 139 (597)
++..+.+.++++...++.+- +|.... .+++-+.-|.|-++.+..-.+| .=.-.-++++++.| | +||||.-
T Consensus 27 ~~d~~~illLl~LYllQGiP-~GL~~~-iP~lL~ak~vSyt~~a~fS~ay--~P~sLKllWaPiVDs~y~k~-~GrrksW 101 (510)
T KOG3574|consen 27 KGDRSSILLLLFLYLLQGIP-LGLIGA-IPLLLQAKGVSYTSQAIFSFAY--WPFSLKLLWAPIVDSVYSKR-FGRRKSW 101 (510)
T ss_pred hhhhhhHHHHHHHHHHcCCc-hhHhhh-hHHHhcCCCcchhhhhhhhhhh--hHHHHHHHHHhhhHHHHHHh-hccccce
Confidence 44445677777777787777 666664 4555556677766554332221 12334578899999 8 8999976
Q ss_pred HHHHHHHHHHHHHHHHhhhccccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhhchhhhhhhhhhccCCCC
Q 007580 140 AIFTTIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDER 219 (597)
Q Consensus 140 ~~~~~l~~~g~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~~~~~ 219 (597)
++-+ -+.+|..+..++........ .+...++...+....++.-+..+..-.++-+..-.+..++
T Consensus 102 vvp~-q~llG~~mllLs~~v~~~~g---------------~ng~~p~v~~lt~~f~LLnflaAtQDIAVDgwALtmLs~e 165 (510)
T KOG3574|consen 102 VVPC-QYLLGLFMLLLSYLVDRGLG---------------GNGGLPNVVALTLLFLLLNFLAATQDIAVDGWALTMLSRE 165 (510)
T ss_pred eeeh-HHHHHHHHHHHhhCCCcccc---------------cCCCCcchHHHHHHHHHHHHHHhhhhhhhhHHHHHhcCHh
Confidence 6543 23456666655532111000 0011123333333445566666666666667667777777
Q ss_pred CchhhhhhhhHHHHHHHHHHHHHHHHHHHH
Q 007580 220 SKDYKTHLDRFFNFFYLSVTVGAIVAFTLV 249 (597)
Q Consensus 220 ~~~~~~~R~~~~~~~~~~~~lg~~l~p~i~ 249 (597)
+ .+-+......+.+.|.+++..+.
T Consensus 166 ~------lgyaST~q~Vg~~~GyfL~~~if 189 (510)
T KOG3574|consen 166 N------LGYASTCQSVGQTAGYFLGNVVF 189 (510)
T ss_pred h------cCchhHHHHHHHhhhHHhhccee
Confidence 7 66666667777788888776654
No 250
>TIGR00806 rfc RFC reduced folate carrier. Proteins of the RFC family are so-far restricted to animals. RFC proteins possess 12 putative transmembrane a-helical spanners (TMSs) and evidence for a 12 TMS topology has been published for the human RFC. The RFC transporters appear to transport reduced folate by an energy-dependent, pH-dependent, Na+-independent mechanism. Folate:H+ symport, folate:OH- antiport and folate:anion antiport mechanisms have been proposed, but the energetic mechanism is not well defined.
Probab=97.40 E-value=0.0045 Score=66.32 Aligned_cols=85 Identities=13% Similarity=0.144 Sum_probs=72.3
Q ss_pred CChhHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhcCccccccCcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 007580 416 ASQLQRVGIGLAVSILSVIWAGIFERYRRNYAISHGYEFSFLTAMPDLSAYWLLIQYCLIGIAEVFCIVGLLEFLYEEAP 495 (597)
Q Consensus 416 ~~~~~~i~~G~~l~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~s~~~l~~~~~l~g~g~~~~~~~~~~~~~~~~P 495 (597)
.+.++.+.++.+..++..++.++. .+...+.+.-+++|++|+... ....+++..+|
T Consensus 89 lG~K~vL~l~~l~Wsl~t~L~~fa-----------------------~Sl~~L~i~R~llGvaEA~~~-A~~syI~~WfP 144 (511)
T TIGR00806 89 LRYKPVLVLQALSFVCVWLLLLLG-----------------------TSVWHMQLMEVFYSVTMAARI-AYSSYIFSLVP 144 (511)
T ss_pred hCchHHHHHHHHHHHHHHHHHHHH-----------------------HHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHCC
Confidence 445556677777666666666654 467788888899999999999 99999999999
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 007580 496 DAMKSIGSAYAALAGGLGCFAASILNSII 524 (597)
Q Consensus 496 ~~~rg~~~gl~~~~~~lg~~lg~~l~~~v 524 (597)
++.|++++|+.+....+|.++++.+.+.+
T Consensus 145 ~kER~ratsi~~sg~~vG~~Ia~~L~qll 173 (511)
T TIGR00806 145 PSRYQRAAAYSRAAVLLGVFLSSVLGQLL 173 (511)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999983
No 251
>PRK15462 dipeptide/tripeptide permease D; Provisional
Probab=97.40 E-value=0.0069 Score=66.15 Aligned_cols=160 Identities=11% Similarity=-0.025 Sum_probs=101.5
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCh----HHHHHHHHHHHHHHHHHhhhhHHHhhcccch--H----
Q 007580 67 GWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSF----ADSSNAVNNFLGISQASSVLGGFLADAYLGR--Y---- 136 (597)
Q Consensus 67 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~----~~a~~~~~~~~~~~~~~~~~~G~lsD~~~GR--~---- 136 (597)
|...++.+++...+.-..+.-..+.+..|..+..+.+- -.+++..+...+...+..|+.+++=.| .+| |
T Consensus 266 r~~~~~~l~~~~~~Fw~~~~Q~~~sl~lfa~~~vd~~~~g~~ip~~~~qslNp~~ii~l~P~~a~lw~~-l~~~~~~~s~ 344 (493)
T PRK15462 266 ELGLIVTLTFFSMLFWAFAQQGGSSISLYIDRFVNRDMFGYTVPTAMFQSINAFAVMLCGVFLAWVVKE-SVAGNRTVRI 344 (493)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhccchhcceeeCHHHHHhHhHHHHHHHHHHHHHHHHH-HhcCCCCCCc
Confidence 33344444444444445555555566666655432211 124555566556556666666666554 322 1
Q ss_pred H-HHHHHHHHHHHHHHHHHHhhhccccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhhchhhhhhhhhhcc
Q 007580 137 W-TIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQ 215 (597)
Q Consensus 137 ~-~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~ 215 (597)
+ =+.++.++..++...+.++..... +....+..++++.-+++.+|+-...|...+++++.
T Consensus 345 ~~Kfa~g~~~~g~~f~~l~~~~~~~~-------------------~~~~~s~~wl~~~~~~~t~gEl~~sPvgls~~~~l 405 (493)
T PRK15462 345 WGKFALGLGLMSAGFCILTLSARWSA-------------------MYGHSSLPLMVLGLAVMGFAELFIDPVAMSQITRI 405 (493)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcC-------------------CCCCcCHHHHHHHHHHHHHHHHHHChHHHHHHHHh
Confidence 1 267777777888777776543110 00013566788888899999999999999999999
Q ss_pred CCCCCchhhhhhhhHHHHHHHHH-HHHHHHHHHHHHHh
Q 007580 216 FDERSKDYKTHLDRFFNFFYLSV-TVGAIVAFTLVVYI 252 (597)
Q Consensus 216 ~~~~~~~~~~~R~~~~~~~~~~~-~lg~~l~p~i~~~i 252 (597)
.|++- |+..++.++... .+|..++..++++.
T Consensus 406 aP~~~------~g~~mg~w~l~~~~~~~~~~g~~~~~~ 437 (493)
T PRK15462 406 EIPGV------TGVLTGIYMLLSGAIANYLAGVIADQT 437 (493)
T ss_pred ChHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999 999999987743 67777766666655
No 252
>PTZ00207 hypothetical protein; Provisional
Probab=97.27 E-value=0.0029 Score=70.37 Aligned_cols=176 Identities=11% Similarity=0.031 Sum_probs=121.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-CCChHH--HHHHHHHHHHHHHHHhhhhHHHhhcccchHH---------
Q 007580 70 AALFIFGNEMAERMAYFGLSVNMVTFMFYVM-HKSFAD--SSNAVNNFLGISQASSVLGGFLADAYLGRYW--------- 137 (597)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~-~~s~~~--a~~~~~~~~~~~~~~~~~~G~lsD~~~GR~~--------- 137 (597)
.+|+++...||..-.-..+..| .-++.+.+ |.+..+ ....++.+.+++++|.+.+|.++. +.-||+
T Consensus 354 d~Wll~~~~~cg~g~gl~~~~N-~~qI~~sl~g~~~~~~~~~~~vsL~si~~~~GRl~~g~~~~-~~~~~~~~~r~prt~ 431 (591)
T PTZ00207 354 RLWCLLWSIFCCVGAHFVIIFN-ARFIYTALAGEAPDDALNTLLTVLNGVGSAVGRLCMSYFEI-WSQKRRAEDRVPITI 431 (591)
T ss_pred hHHHHHHHHHHhhCchheeeec-HHHHHHHhcCCCCCccceeeehhhhhHHHHhhHHHHHHHHH-HHHhhccccccchhH
Confidence 5677777777765554444455 46777778 663322 223789999999999999999993 222322
Q ss_pred HHHHHHHHHHHHHHHHHHhhhccccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhhchhhhhhhhhhccCC
Q 007580 138 TIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFD 217 (597)
Q Consensus 138 ~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~~~ 217 (597)
.+.+..+ ..++.+++++.. + ...++++-++.|++.|..+++....+.|+|.
T Consensus 432 ~l~~~~~-~~~~~lll~~~~---------------------------p-~~~L~~~~~lvg~~~G~~~~~~~~i~selFg 482 (591)
T PTZ00207 432 ALFIPSV-CIITMLTLFLTL---------------------------P-KAALPLPYFIAAFANGFMAATIALVTRTIFA 482 (591)
T ss_pred HHHHHHH-HHHHHHHHHHHC---------------------------C-ccHhHHHHHHHHHHhhHhHHHHHHHHHHHhc
Confidence 2223333 455555555541 1 1478899999999999999999999999999
Q ss_pred CCCchhhhhhhhHHHHHHHHHHHHHHHH-HHHHHHhhhcc----------c---hHHHHHHHHHHHHHHHHHHHHhcCcc
Q 007580 218 ERSKDYKTHLDRFFNFFYLSVTVGAIVA-FTLVVYIQMEH----------G---WGSAFGALAIAMGISNMLFFIGTPLY 283 (597)
Q Consensus 218 ~~~~~~~~~R~~~~~~~~~~~~lg~~l~-p~i~~~i~~~~----------g---w~~~f~i~~~~~~~~~~~~~~~~~~~ 283 (597)
++ -++-+++...+.-+|+.+- -.+.|.+.|.- | ++..|.+.+...+++.++-....-++
T Consensus 483 -k~------~g~~yN~~~~a~pigs~~~n~~l~G~~Yd~ea~k~~~~~C~G~~C~~~~~~v~~~~~~~g~~~s~~l~~R~ 555 (591)
T PTZ00207 483 -KD------PAKHYNFCFLGSVLSAIFLNRLLYGEWYTQQADKLGQDVCTERVCVVMPLAFLLGLSFLAFITSTYVHLQY 555 (591)
T ss_pred -cc------hHHHhhHHhHHHHHHHHHHHHHHHHHHHHHHHhhCCCCeeCCceeeHhHHHHHHHHHHHHHHHHhheeeeh
Confidence 77 7888888888888888764 44566665421 2 68888888877777766655544433
No 253
>TIGR00769 AAA ADP/ATP carrier protein family. These proteins are members of the ATP:ADP Antiporter (AAA) Family (TC 2.A.12), which consists of nucleotide transporters that have 12 GES predicted transmembrane regions. One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.
Probab=97.26 E-value=0.42 Score=51.89 Aligned_cols=166 Identities=10% Similarity=0.004 Sum_probs=102.9
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCC-----hHHHHHHHHHHHHHHHHH-hhhhHHHhhcccchHHHHHH
Q 007580 68 WIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKS-----FADSSNAVNNFLGISQAS-SVLGGFLADAYLGRYWTIAI 141 (597)
Q Consensus 68 ~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s-----~~~a~~~~~~~~~~~~~~-~~~~G~lsD~~~GR~~~~~~ 141 (597)
++.++...+..|+-.+.|+.+.+ +.+.+..+ .+...++-+...+...+. .++-+++++| ++|++.+.+
T Consensus 6 ~~k~~~~~l~fF~il~~Y~iLR~-----lKD~lvv~~~~~gae~i~fLk~~~~lp~~~~~~~ly~~l~~~-~~~~~lf~~ 79 (472)
T TIGR00769 6 LKKFLPLFLMFFCILFNYTILRD-----TKDTLVVTAKGSGAEIIPFLKTWVVVPMAVIFMLIYTKLSNI-LSKEALFYT 79 (472)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh-----hhhheeecccCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhc-CCHHHhHHH
Confidence 34566677777777777665543 46666552 234555555554554444 7889999999 899999988
Q ss_pred HHHHHHHHHHHHHHhhhc--cccCCCCCcccccccccCCCCCccchhH---------HHHHHHHHHHHHhhhchhh-hhh
Q 007580 142 FTTIYLAGLTGITLCATM--KVFMPNQDNCDRISQLLGSCEPAKSWQM---------LYLYTVLYITGFGAAGIRP-CVS 209 (597)
Q Consensus 142 ~~~l~~~g~~~~~~~~~~--~~~~~~~~~c~~~~~~~~~~~~~~~~~~---------~~l~~~~~l~g~g~g~~~~-~~~ 209 (597)
....+.....+.++.... ..++|. ..|++. ....+.+. +...+.-....+-...... ...
T Consensus 80 ~~~~F~~~f~lF~~vl~p~~~~~~p~-~~~~~~-------~~~~~~~~~~~i~~~~~W~~~~FYv~~elw~~~vvS~lFW 151 (472)
T TIGR00769 80 VISPFLGFFALFAFVIYPLSDLLHPT-ALADKL-------LSLLPPGFMGFIAILRIWSFALFYVMAELWGSVVLSLLFW 151 (472)
T ss_pred HHHHHHHHHHHHHHHHhcchhhcCCc-HHHHHH-------HhhcchhhHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 887777777776655321 112222 012100 00000111 1111111122333333444 678
Q ss_pred hhhhccCCCCCchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhh
Q 007580 210 SFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQ 253 (597)
Q Consensus 210 ~~~ad~~~~~~~~~~~~R~~~~~~~~~~~~lg~~l~p~i~~~i~ 253 (597)
++..|.+..++ -.+++++++.+.|+|..+++.+..++.
T Consensus 152 ~fandi~t~~q------akRfy~l~~~ganlg~i~sg~~~~~~~ 189 (472)
T TIGR00769 152 GFANQITTIDE------AKRFYALFGLGANVALIFSGRTIKYFS 189 (472)
T ss_pred HHHHhcCCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999998 889999999999999999999998876
No 254
>PF03137 OATP: Organic Anion Transporter Polypeptide (OATP) family; InterPro: IPR004156 This family consists of several eukaryotic Organic-Anion-Transporting Polypeptides (OATPs). Several have been identified mostly in human and rat. Different OATPs vary in tissue distribution and substrate specificity. Since the numbering of different OATPs in particular species was based originally on the order of discovery, similarly numbered OATPs in humans and rats did not necessarily correspond in function, tissue distribution and substrate specificity (in spite of the name, some OATPs also transport organic cations and neutral molecules) so a scheme of using digits for rat OATPs and letters for human ones was introduced []. Prostaglandin transporter (PGT) proteins are also considered to be OATP family members. In addition, the methotrexate transporter OATK is closely related to OATPs. This family also includes several predicted proteins from Caenorhabditis elegans and Drosophila melanogaster. This similarity was not previously noted. Note: Members of this family are described (in the UniProtKB/Swiss-Prot database) as belonging to the SLC21 family of transporters.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 3MRR_P.
Probab=97.13 E-value=0.00011 Score=81.26 Aligned_cols=181 Identities=10% Similarity=0.059 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHH-HHHHHhhhhHHHhhcc-cchHHHHHHHHHHHH
Q 007580 70 AALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLG-ISQASSVLGGFLADAY-LGRYWTIAIFTTIYL 147 (597)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~-~~~~~~~~~G~lsD~~-~GR~~~~~~~~~l~~ 147 (597)
.+....+...++.+...++.+++|-|+..+|++++++++.+.+...+ +.++|.++||++..|+ ++.|.++.+..+...
T Consensus 306 ~f~~~~la~~~~~~~~~G~~tF~pKylE~QF~~sas~A~~l~G~v~ip~~~~G~llGG~ivkk~kl~~~~~~~~~~v~~~ 385 (539)
T PF03137_consen 306 VFMCLILAGVFESFIVSGFATFLPKYLESQFGLSASQASLLTGIVSIPGAALGILLGGYIVKKFKLSARGAAKFCIVVSI 385 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHhhhhcchhheehheEEEEEEEecCcHHHHHHHHHHHHH
Confidence 56777778888899999999999999999999999999988877655 7889999999999993 234444444444433
Q ss_pred HHHHHHHHhhhc------------ccc--CC------CCCccccc------ccccCCCCCccchhHHHHHHHHHHHHHhh
Q 007580 148 AGLTGITLCATM------------KVF--MP------NQDNCDRI------SQLLGSCEPAKSWQMLYLYTVLYITGFGA 201 (597)
Q Consensus 148 ~g~~~~~~~~~~------------~~~--~~------~~~~c~~~------~~~~~~~~~~~~~~~~~l~~~~~l~g~g~ 201 (597)
+..+.......+ ++. .. ....|+.. +-+.+.|...-..++..|++..++..+..
T Consensus 386 v~~~~~~~~~~~~C~~~~~aGv~~~y~~~~~~~~~~~~~~~Cn~~~~~~~~~a~~G~C~~~C~~~~~~Fl~~~~~~~~~~ 465 (539)
T PF03137_consen 386 VSVILYSPLFFLGCPNPPIAGVTVPYHNSTSSSPSCNLTCSCNSCCSSGNGSATPGKCPSDCCNKLIPFLILLFILSFFT 465 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHeecCCCCceeeecCccccccCCCCCCCCCCCCCCccCCCcccccCCCcCcccccccHHHHHHHHHHHHHH
Confidence 333321111000 000 00 00012110 01234566553345666666666666666
Q ss_pred hchhhhhhhhhhccCCCCCchhhhhhhhHHHHHH-HHHHHHHHHHHHHHHHhhhcc
Q 007580 202 AGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFY-LSVTVGAIVAFTLVVYIQMEH 256 (597)
Q Consensus 202 g~~~~~~~~~~ad~~~~~~~~~~~~R~~~~~~~~-~~~~lg~~l~p~i~~~i~~~~ 256 (597)
+..........-+..++++ |..+.++.. +...+|.+-||++-|++.|..
T Consensus 466 ~~~~~p~~~i~LR~V~~~~------rs~AlGv~~~~~rllg~IPgPIifG~iiD~t 515 (539)
T PF03137_consen 466 FMSQVPSTLITLRCVPPEQ------RSFALGVQWLIIRLLGFIPGPIIFGAIIDST 515 (539)
T ss_dssp --------------------------------------------------------
T ss_pred HhcccchheeeeccCChhh------cchhhhHHHHHHHhhcCcchHHHHhHHHhhh
Confidence 6666666666679999999 999999944 455778899999999998863
No 255
>KOG2615 consensus Permease of the major facilitator superfamily [General function prediction only]
Probab=97.09 E-value=0.0055 Score=63.08 Aligned_cols=151 Identities=13% Similarity=0.070 Sum_probs=112.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhhCCChHHHHHHHHHHHHHHHHHhhhhHHHhhcccch-HHHHHHHHHHHH
Q 007580 70 AALFIFGNEMAERMAYFGLSVNMVTFM-FYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGR-YWTIAIFTTIYL 147 (597)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~l~~yl-~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~lsD~~~GR-~~~~~~~~~l~~ 147 (597)
..+.++....+.....|....+.+.++ .+.+++++.+.|-+.+.-.+...+.++.-.+..|++.|. +-.+..++++..
T Consensus 261 ~~~~i~~l~~~ly~~l~s~~~~t~~~l~~~rfg~ss~~~G~vl~~tGl~m~~~ql~~~~~l~~~~~~~~a~l~~~l~~~v 340 (451)
T KOG2615|consen 261 SVLRIFGLHYFLYLELFSGLENTVLFLTHGRFGYSSMQQGKVLSTTGLLMLVIQLALVPILPRYKGNIKAVLLFSLLLIV 340 (451)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHhhcCccCCChhhheeeeehhhHHHHHHHHhccccccccccchhhHHHHHHHHHH
Confidence 455555555544555555555556666 456999999999888887888888888888888885443 333344444433
Q ss_pred HHHHHHHHhhhccccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhhchhhhhhhhhhccCCCCCchhhhhh
Q 007580 148 AGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHL 227 (597)
Q Consensus 148 ~g~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~R 227 (597)
-..++...+ ....+++.+..+..+..+...++...++....|+++ |
T Consensus 341 P~~llls~~----------------------------~~~~~l~~~s~l~sf~~A~~vt~Lt~Lv~~~~~~~q------r 386 (451)
T KOG2615|consen 341 PAFLLLSLA----------------------------RTPVVLYLGSTLKSFSTASVVTCLTSLVHKYGPQSQ------R 386 (451)
T ss_pred HHHHHHhcc----------------------------ccchhhhHHHHHHHHHHHHhhHHHHHHHHhcCCccc------c
Confidence 344444443 234678888899999999999999999999999999 9
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhhh
Q 007580 228 DRFFNFFYLSVTVGAIVAFTLVVYIQM 254 (597)
Q Consensus 228 ~~~~~~~~~~~~lg~~l~p~i~~~i~~ 254 (597)
|...|+......++=++||+++|.+..
T Consensus 387 G~~~Gi~~Sl~alaRaiGPlv~g~i~~ 413 (451)
T KOG2615|consen 387 GTLNGIFRSLGALARAIGPLVSGVIFS 413 (451)
T ss_pred hHHHHHHHHHHHHHHHhhhhhhheeEE
Confidence 999999999999999999999988754
No 256
>KOG0255 consensus Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily) [General function prediction only]
Probab=97.01 E-value=0.034 Score=61.56 Aligned_cols=176 Identities=10% Similarity=0.022 Sum_probs=107.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHhhhhHHHhhcccchHHHHHHHHHHHHH
Q 007580 69 IAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLA 148 (597)
Q Consensus 69 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~lsD~~~GR~~~~~~~~~l~~~ 148 (597)
+..+.+.+..+...+.+|+.. +....+|.+.......... .........+.+-|+ +|||.....+.++..+
T Consensus 322 ~~~~~~~~~~~~~~~~y~gl~-----~~~~~lg~~~~~~~~~~~~---~~~p~~~~~~~~~~~-~gR~~~~~~~~~~~~~ 392 (521)
T KOG0255|consen 322 YRTLYLLFIWFVFSLVYYGLS-----LNVSGLGGNIYLNFTLSGL---VELPAYFRNGLLLPE-FGRRPPLFLSLFLAGI 392 (521)
T ss_pred HHHHHHHHHHHHHhHHHHhhh-----hhhhhcCchHHHHHHHHHH---HHhhHHHHHHHHHHH-hCcHHHHHHHHHHHHH
Confidence 345555555555555555443 3344566555433333333 444444555899998 8999999999999998
Q ss_pred HHHHHHHhhhccccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhhchhhhhhhhhhccCCCCCchhhhhhh
Q 007580 149 GLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLD 228 (597)
Q Consensus 149 g~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~R~ 228 (597)
+++..+..... .+.....+...+..++.+....+...+.+|++|+.. |.
T Consensus 393 ~~~~~~~~~~~-------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~el~pt~~------r~ 441 (521)
T KOG0255|consen 393 GLLLFGWLPDD-------------------------LGGWLHWILPLLGKFFIGSAFNLIFLYSAELIPTVV------RN 441 (521)
T ss_pred HHHHHHHhhcc-------------------------chhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccHHH------HH
Confidence 88888876320 110123333334445555555666888999999999 99
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHhcCcccc
Q 007580 229 RFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGTPLYRH 285 (597)
Q Consensus 229 ~~~~~~~~~~~lg~~l~p~i~~~i~~~~gw~~~f~i~~~~~~~~~~~~~~~~~~~~~ 285 (597)
.+.+.......+|.+++|.+...... ......+.+.+....+...+..+..++.+.
T Consensus 442 ~~~~~~~~~~~~~~i~ap~~~~~~~~-~~~~~~~~~~~~~~~l~~~~~~~~lpet~~ 497 (521)
T KOG0255|consen 442 TAVGAISAAARLGSILAPLFPLLLRQ-MFPLLGLILFGWLALLLGLLSLLLLPETKG 497 (521)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhh-hcccchHHHHHHHHHHHHHHHHhcCcccCC
Confidence 99999999999999999988765544 222223222233333333334345554433
No 257
>PRK03612 spermidine synthase; Provisional
Probab=96.95 E-value=0.13 Score=56.80 Aligned_cols=154 Identities=12% Similarity=0.112 Sum_probs=86.7
Q ss_pred HHHHHHHhhCCChHHHHHHHHHHHHHHHHHhhhhHHHhhcccchHHHHH-HHHHHHHHHHH-HHHHhhhccccCCCCCcc
Q 007580 92 MVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIA-IFTTIYLAGLT-GITLCATMKVFMPNQDNC 169 (597)
Q Consensus 92 l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~lsD~~~GR~~~~~-~~~~l~~~g~~-~~~~~~~~~~~~~~~~~c 169 (597)
..-.+...+|-+....+.+++.|.++..+|..++|+++++ .-|+.... +...+...... ++.....+.
T Consensus 37 ~~r~l~~~~G~s~~~~~~ii~~fl~glalGs~l~~~~~~~-~~~~~~~~e~~i~l~~~~~~~ll~~~~~~~--------- 106 (521)
T PRK03612 37 LGTLASYLLGDSVTQFSTVIGLMLFAMGVGALLSKYLLRD-AAAGFVAVELLLALLGGLSALILYAAFAFQ--------- 106 (521)
T ss_pred HHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHhhhhh-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------
Confidence 3445666778888888999999999999999999988754 22332211 11111111111 111110000
Q ss_pred cccccccCCCCCccchhHHHHHHHHHHHHHhhhchhhhhhhhhhccCCCCCchhhhhhhhHHHHHHHHHHHHHHHHHHHH
Q 007580 170 DRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLV 249 (597)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~R~~~~~~~~~~~~lg~~l~p~i~ 249 (597)
......++...++.++..|+..|....+..+... ++ -++..+-.|....+|+++|.++.
T Consensus 107 --------------~~~~~~~~~~~~~~~~l~G~~~Pl~~~~~~~~~~-~~------~g~~~g~ly~~ntlGa~~G~l~~ 165 (521)
T PRK03612 107 --------------GLSRLLLYVLVLLIGLLIGMEIPLLMRILQRIRD-QH------LGHNVATVLAADYLGALVGGLAF 165 (521)
T ss_pred --------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc-cc------hhhhhhhhHhHHhHHHHHHHHHH
Confidence 0111223334456678888888877776654332 12 24556677888889999999998
Q ss_pred HHhhh-ccch-HHHHHHHHHHHHHHHHHH
Q 007580 250 VYIQM-EHGW-GSAFGALAIAMGISNMLF 276 (597)
Q Consensus 250 ~~i~~-~~gw-~~~f~i~~~~~~~~~~~~ 276 (597)
+++.- ..|- +..+.+.++-.+++++++
T Consensus 166 ~~vLlp~lG~~~t~~~~a~l~~~~a~~~~ 194 (521)
T PRK03612 166 PFLLLPRLGLIRTAALTGSLNLLAALVFL 194 (521)
T ss_pred HHHHHHhcchHHHHHHHHHHHHHHHHHHH
Confidence 88654 5664 444433333333443333
No 258
>PF06779 DUF1228: Protein of unknown function (DUF1228); InterPro: IPR010645 This entry represents the N terminus of several putative bacterial membrane proteins, which may be sugar transporters. Note that many members are hypothetical proteins.
Probab=96.65 E-value=0.018 Score=46.50 Aligned_cols=64 Identities=8% Similarity=-0.071 Sum_probs=58.4
Q ss_pred HHHHHHHhhCCChHHHHHHHHHHHHHHHHHhhhhHHHhhcccchHHHHHHHHHHHHHHHHHHHHh
Q 007580 92 MVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLC 156 (597)
Q Consensus 92 l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~lsD~~~GR~~~~~~~~~l~~~g~~~~~~~ 156 (597)
+.+.+.++.++|.++++++.+...+++.+|.+...++.++ ..+++.+..+.++.++.+..+++.
T Consensus 14 lLP~M~~~~~ls~~~ag~lasaNy~GYL~GAl~~~~~~~~-~~~~~~~~~~l~~~~~~~~~ma~~ 77 (85)
T PF06779_consen 14 LLPLMQADGGLSLSQAGWLASANYLGYLVGALLASRLPRH-SRPRRLLRAGLLLTVLSTAAMALT 77 (85)
T ss_pred HhHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhc-ccHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567889999999999999999999999999999999998 688899999999989888888876
No 259
>PF00854 PTR2: POT family; InterPro: IPR000109 This entry represents the POT (proton-dependent oligopeptide transport) family, which all appear to be proton dependent transporters. The transport of peptides into cells is a well-documented biological phenomenon which is accomplished by specific, energy-dependent transporters found in a number of organisms as diverse as bacteria and humans. The POT family of proteins is distinct from the ABC-type peptide transporters and was uncovered by sequence analyses of a number of recently discovered peptide transport proteins []. These proteins that seem to be mainly involved in the intake of small peptides with the concomitant uptake of a proton []. These integral membrane proteins are predicted to comprise twelve transmembrane regions.; GO: 0005215 transporter activity, 0006857 oligopeptide transport, 0016020 membrane; PDB: 4APS_A 2XUT_C.
Probab=96.46 E-value=0.014 Score=61.70 Aligned_cols=124 Identities=14% Similarity=0.121 Sum_probs=88.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHhhhcCccccccCcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchh---
Q 007580 421 RVGIGLAVSILSVIWAGIFERYRRNYAISHGYEFSFLTAMPDLSAYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPDA--- 497 (597)
Q Consensus 421 ~i~~G~~l~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~s~~~l~~~~~l~g~g~~~~~~~~~~~~~~~~P~~--- 497 (597)
.+.+|.++..++++++.+..... . ...+ .+...+.+.+.++++|.++.-|+...+..++.+++
T Consensus 3 tI~~g~~~~~~G~~ll~l~~~~~-------~------~~~~-~~~~~~~~gL~lia~G~G~~K~ni~~~~~dq~~~~~~~ 68 (372)
T PF00854_consen 3 TILLGSIVYLLGHVLLTLSAIPP-------S------LPSG-IQLGLFYIGLALIAVGTGGIKPNISPFGADQYDEDDDS 68 (372)
T ss_dssp HHHHHHHHHHHHHHH--HHHTSS-------S------C-------CHHHHHHHHHHHHHHCCHHHHHHHHHHCSSTTTTT
T ss_pred hhhHHHHHHHHHHHHhHHHHhcc-------h------hhhh-HHHHHHHHHHHHHHhccccccccHHHHHHHHhcccchh
Confidence 46677778888887755442110 0 0011 34456777888899999999999999999999876
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCCCCCccccCCCCcchhHHHHHHHHHHHHHHHHHHHhhhccccc
Q 007580 498 MKSIGSAYAALAGGLGCFAASILNSIIKSVTGNPKKGQPNWLAQNINTGRFDYLYWLLAVLSVINFCAFLYSAYRYKYR 576 (597)
Q Consensus 498 ~rg~~~gl~~~~~~lg~~lg~~l~~~v~~~~g~~~~~~~~w~~~~l~~~~~~~~f~~~a~l~~l~~~~~~~~~~~~~~~ 576 (597)
.|..+...+.....+|..++..+.+.+.+..| | ...|.+.++..+++.+.++...++++++
T Consensus 69 ~~~~~F~~fY~~in~G~~~~~~~~~~i~~~~~--------~----------~~~f~i~~~~~~~~~~~f~~~~~~y~~~ 129 (372)
T PF00854_consen 69 RRDSFFNWFYWGINIGSLFSPTLVPYIQQNYG--------W----------FLGFGIPAIGMLLALIVFLSGRKRYRKV 129 (372)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHCCCHHHHCS---------H----------HHHHHHHHHHHHHHHHHHHCCCCTT--S
T ss_pred hhhhhHHHHHHHHhhhhHhhcccchhhccccc--------h----------hhhhhHHHHHHHHHHHHHHhCCcCCcCc
Confidence 56777888899999999999999888876544 4 6788888888888888877776666665
No 260
>KOG2816 consensus Predicted transporter ADD1 (major facilitator superfamily) [General function prediction only]
Probab=96.38 E-value=0.021 Score=61.86 Aligned_cols=127 Identities=12% Similarity=0.044 Sum_probs=106.6
Q ss_pred HHHHHHHHhhCCChHHHHHHHHHHHHHHHHHhhhhH-HHhhcccchHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCcc
Q 007580 91 NMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGG-FLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNC 169 (597)
Q Consensus 91 ~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G-~lsD~~~GR~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~c 169 (597)
.+..|+...++++..+.+...+.......++.++.. .+.-. +|-|+++.++++...+...+.+++
T Consensus 263 ~~~~yl~~~f~w~~~~~s~~~~~~~~~~~i~~l~~~~~l~~~-l~~~~~i~lGl~~~~~~~~~~af~------------- 328 (463)
T KOG2816|consen 263 VLLLYLKAKFGWNKKEFSDLLSLVSILGIISQLLLLPLLSSI-LGEKRLISLGLLSEFLQLLLFAFA------------- 328 (463)
T ss_pred EEEEEEeeecCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhhhhHhhHHHHHHHHHHHHHHHh-------------
Confidence 446788889999999999888888888888888888 55665 899999999999999999999987
Q ss_pred cccccccCCCCCccchhHHHHHHHHHHHHHhhhchhhhhhhhhhccCCCCCchhhhhhhhHHHHHHHHHHHHHHHHHHHH
Q 007580 170 DRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLV 249 (597)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~R~~~~~~~~~~~~lg~~l~p~i~ 249 (597)
++.++.+....+ +.......|...++.+.+.++++ +++.+++....-.+.+.++|.+-
T Consensus 329 ---------------~~~w~~~~~~v~-~~~~~~~~pa~~s~~s~~v~~~e------~g~v~~~is~i~~l~~~~~~~~~ 386 (463)
T KOG2816|consen 329 ---------------TETWMMFAAGVV-VALAGIVFPAIRAFASILVSPEE------QGKVFGIISGIEGLSGVVSPALY 386 (463)
T ss_pred ---------------ccchhhhHHHHH-HHhhcchhHHHHhHHHhhccccc------ccchhhHHHHHHHHhhhhhHHHH
Confidence 455666666544 45556778999999999999999 99999999999999999999888
Q ss_pred HHhh
Q 007580 250 VYIQ 253 (597)
Q Consensus 250 ~~i~ 253 (597)
+.+.
T Consensus 387 ~~i~ 390 (463)
T KOG2816|consen 387 GNIF 390 (463)
T ss_pred HHHH
Confidence 7664
No 261
>KOG3626 consensus Organic anion transporter [Secondary metabolites biosynthesis, transport and catabolism]
Probab=96.37 E-value=0.027 Score=63.33 Aligned_cols=184 Identities=13% Similarity=0.055 Sum_probs=119.3
Q ss_pred CCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHH-HHHHHHHhhhhHHHhhcc-cchHHHHHHH
Q 007580 65 TGGWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNF-LGISQASSVLGGFLADAY-LGRYWTIAIF 142 (597)
Q Consensus 65 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~-~~~~~~~~~~~G~lsD~~-~GR~~~~~~~ 142 (597)
..++ .+....+...++.+.+.++.+++|-|+.++++.+...+..+++.. ..+.++|.++||++.-|+ +.-|.+..+.
T Consensus 389 l~N~-if~~~~l~~~~~~~~~~G~~tFlPKyLE~Qfg~sas~An~l~G~i~vp~~~~Gi~lGG~iikkfkl~~r~~a~~~ 467 (735)
T KOG3626|consen 389 LSNP-IFMLVVLASVIESLAITGYITFLPKYLETQFGISASLANILTGSIGVPAAAVGIFLGGLIIKKFKLSARGAAKFV 467 (735)
T ss_pred hcCc-hHHHHHHHHHHHHHHHhhHHHhhHHHHHHHcCCCHHHHHHHhhhhhhhhhhhhhhccceeeeeecccHHHHHHHH
Confidence 3344 567788888999999999999999999999999999999888665 456788999999999983 2344444444
Q ss_pred HHHHHHHHHHHHHhhhc------------c-ccCCCCC-------ccccc------------------------------
Q 007580 143 TTIYLAGLTGITLCATM------------K-VFMPNQD-------NCDRI------------------------------ 172 (597)
Q Consensus 143 ~~l~~~g~~~~~~~~~~------------~-~~~~~~~-------~c~~~------------------------------ 172 (597)
++..++.++.+..-..+ + ...|..+ .|+..
T Consensus 468 ~~~~~l~l~~~~~~~~igC~~~~~aG~~~~y~~~~~~~~~~~~~s~Cn~~C~C~~~~~~PVCg~~G~tY~SpChAGC~~~ 547 (735)
T KOG3626|consen 468 IVCSVLSLLFYSLLFFIGCESSPVAGVTNSYEGSPAFTSHENPFSSCNSDCSCDTSEYEPVCGENGITYFSPCHAGCTES 547 (735)
T ss_pred HHHHHHHHHHHHHHHEecCCCCcccceecCCCCCCccccCCCchhhhhcCCCCCCcCcCcccCCCCCEEeChhhhCCccc
Confidence 33333333221111000 0 0001111 14210
Q ss_pred --c-------------c----cc-----CCCCCccchhHHHHHHHHHHHHHhhhchhhhhhhhhhccCCCCCchhhhhhh
Q 007580 173 --S-------------Q----LL-----GSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLD 228 (597)
Q Consensus 173 --~-------------~----~~-----~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~R~ 228 (597)
+ + ++ +.|..+....+..|++..++.-+..+...+....++-+..++++ |.
T Consensus 548 ~~~~~~~~~ytnCsCv~~~~~~~~~a~~G~C~~~c~~~~~~Fl~~~~~~sf~~~~~~~p~~~i~LR~V~~e~------ks 621 (735)
T KOG3626|consen 548 SGTSDGNTIYTNCSCVPTNKNGNGSAKKGYCPNDCCRQFLIFLALFAIGSFIGALGAVPGMLIVLRCVPPEE------KS 621 (735)
T ss_pred ccCCCCceeeccccccccccCCCceeecCCCCCCcchhhHHHHHHHHHHHHHHHhccCcceEEEEEccCchh------ch
Confidence 0 1 01 12544444555556655555555556666667777789999999 99
Q ss_pred hHHHH-HHHHHHHHHHHHHHHHHHhhhc
Q 007580 229 RFFNF-FYLSVTVGAIVAFTLVVYIQME 255 (597)
Q Consensus 229 ~~~~~-~~~~~~lg~~l~p~i~~~i~~~ 255 (597)
-+.++ +.+...+|.+-+|++-|++.|.
T Consensus 622 ~AlG~~~~~irllg~IPsPIifG~~ID~ 649 (735)
T KOG3626|consen 622 FALGFQWMLIRLLGFIPSPIIFGAVIDT 649 (735)
T ss_pred hhhHHHHHHHHHHhcCCchHhhhhhHhh
Confidence 99999 4555578888999999998764
No 262
>COG3104 PTR2 Dipeptide/tripeptide permease [Amino acid transport and metabolism]
Probab=96.08 E-value=0.15 Score=54.72 Aligned_cols=160 Identities=13% Similarity=0.046 Sum_probs=98.3
Q ss_pred HHHHHHHHHHhhCCC----hHHHHHHHHHHHHHHHHHhhhhHHHhhcccchH-------HHHHHHHHHHHHHHHHHHHhh
Q 007580 89 SVNMVTFMFYVMHKS----FADSSNAVNNFLGISQASSVLGGFLADAYLGRY-------WTIAIFTTIYLAGLTGITLCA 157 (597)
Q Consensus 89 ~~~l~~yl~~~~~~s----~~~a~~~~~~~~~~~~~~~~~~G~lsD~~~GR~-------~~~~~~~~l~~~g~~~~~~~~ 157 (597)
.+.+..|.++..+.+ +-...+..+.-.+...+..++..++--+ .||+ .-+.++..+...+...+....
T Consensus 304 ~ssl~~~a~~~v~~~~~g~~vp~~~fQslNp~~Iii~~pI~a~l~~~-l~~~~~~ps~~~KFalGl~l~g~~fl~l~~~~ 382 (498)
T COG3104 304 GSSLNLYADRNVNRQIFGFEVPPAWFQSLNPFFIILFSPILAALWTK-LGRGNKQPSTPIKFALGLILAGLGFLILLLAG 382 (498)
T ss_pred cchHHHHHHHhhcccccceecCHHHHHhhCHHHHHHHHHHHHHHHhH-hhcCCCCCCcchHHHHHHHHHHHHHHHHHHHH
Confidence 345566665543322 0122344444445555566666666655 4443 233455555555555555442
Q ss_pred hccccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhhchhhhhhhhhhccCCCCCchhhhhhhhHHHHHHHH
Q 007580 158 TMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLS 237 (597)
Q Consensus 158 ~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~R~~~~~~~~~~ 237 (597)
.... .+.+..++++++..-+++++|.=.+.|...++++...|++- .+..++.|.+.
T Consensus 383 ~~~~------------------~~~~~~s~~~lil~y~l~s~gEL~iSpvGLs~~t~laP~~~------~s~~ma~wfLt 438 (498)
T COG3104 383 IWFG------------------GPSGLVSVWWLVLSYVLQSFGELFISPVGLSMVTKLAPPAL------KSFIMAMWFLT 438 (498)
T ss_pred Hhhc------------------CCCCCcCHHHHHHHHHHHHHHHHHhCHHHHHHHHHhChHHH------HHHHHHHHHHH
Confidence 2110 01122467888889999999999999999999999999987 88889999999
Q ss_pred HHHHHHHHHHHHHH------hhhccchHHHHHHHHHHHHHHH
Q 007580 238 VTVGAIVAFTLVVY------IQMEHGWGSAFGALAIAMGISN 273 (597)
Q Consensus 238 ~~lg~~l~p~i~~~------i~~~~gw~~~f~i~~~~~~~~~ 273 (597)
...|..++..+.+. ..+.......|+..+....+..
T Consensus 439 ~a~~~~l~g~va~~~~~~~~~~~~~~~~~~F~~~g~v~i~~~ 480 (498)
T COG3104 439 VAAGQTLGGQVAGLTAVTDPAYTAFIEGRVFGTIGVVAIVIG 480 (498)
T ss_pred HHHHHHhhceecccccccchhhhhhhhhhhHHHHHHHHHHHH
Confidence 99888888777762 2223345556666555444333
No 263
>KOG2563 consensus Permease of the major facilitator superfamily [General function prediction only]
Probab=96.08 E-value=0.029 Score=59.12 Aligned_cols=183 Identities=13% Similarity=0.039 Sum_probs=102.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHhhhhHHHhhcccchHH-HHHHHHHHHHHH
Q 007580 71 ALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYW-TIAIFTTIYLAG 149 (597)
Q Consensus 71 ~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~lsD~~~GR~~-~~~~~~~l~~~g 149 (597)
+++++....+....+|+..+.+-.- ...-|.+...+|.+...-.+++.++..+.|.++|| ....+ +.++......++
T Consensus 268 F~il~~~ygi~~g~F~~l~~~l~~~-l~~sgY~~~~aG~ig~l~iv~Gmlga~~~gii~Dk-tk~fk~~~~v~~~~~~v~ 345 (480)
T KOG2563|consen 268 FIILAICYGIGLGLFNSLSTLLNLA-LCPSGYEGVFAGYIGALMIVAGMLGALASGIIADK-TKKFKLTTLVLYLFALVG 345 (480)
T ss_pred HHHHHHHHhhhHHHHHHHHHHhhhc-cccccCCccccchhHHHHHHHHHHHHHHHHhhhhh-hhhHHHHHHHHHHHHHHH
Confidence 3444444444444445554443212 23446666788888888899999999999999999 55444 444444444444
Q ss_pred H-HHHHHhhhccccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhhchhhhhhhhhhccCCCCCchhhhhhh
Q 007580 150 L-TGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLD 228 (597)
Q Consensus 150 ~-~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~R~ 228 (597)
. .+...... . ...+.++..-.+.|++..+..|...-+..|..-+..+ +
T Consensus 346 ~~~l~~~t~~---------~----------------~~~viv~~t~~~~g~~~~~~~Pig~ElgvE~TyPv~E------~ 394 (480)
T KOG2563|consen 346 TLMLLTCTLF---------L----------------GDSVIVFTTCGLLGFFGTGYLPIGFELGVETTYPVAE------G 394 (480)
T ss_pred HHHHHHhhcc---------C----------------CceEehhhhHHHHHHhhcCCCCcceeeeeeeccccCC------c
Confidence 2 11221110 0 1234555666788888888889888887776655542 3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhhccc---hHHH-HHHHHHHHHHHHHHHHHhcCccccc
Q 007580 229 RFFNFFYLSVTVGAIVAFTLVVYIQMEHG---WGSA-FGALAIAMGISNMLFFIGTPLYRHR 286 (597)
Q Consensus 229 ~~~~~~~~~~~lg~~l~p~i~~~i~~~~g---w~~~-f~i~~~~~~~~~~~~~~~~~~~~~~ 286 (597)
...|+.+....+-+.+-..+-+...+..+ |.++ -+.......+..++..+.++.+++.
T Consensus 395 tSsGll~~~gq~f~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~~lva~~r~~y~R~ 456 (480)
T KOG2563|consen 395 TSSGLLNLSGQIFGVILVFIMGILAEDLGPPGNTFPANIFLTVSALLGAILVAFFRPDYRRL 456 (480)
T ss_pred ccceeEEeehhHHHHHHHHHHHHHhhccCCCCCCccchhHhHHHHHHHHHHHhhhhhhHHhH
Confidence 44455444444444444555566655544 3332 2223333444444445556655443
No 264
>PF06963 FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 This entry represents the solute carrier family 40 member 1 family of proteins, also known as Ferroportin 1. It is thought to be involved in iron export from duodenal epithelial cells and also in transfer of iron between maternal and fetal circulation. This family of proteins is known to be localised in the basolateral membrane of polarized epithelial cells [].; GO: 0005381 iron ion transmembrane transporter activity, 0034755 iron ion transmembrane transport, 0016021 integral to membrane
Probab=95.68 E-value=0.54 Score=50.47 Aligned_cols=139 Identities=9% Similarity=-0.063 Sum_probs=106.0
Q ss_pred HHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHhhhhHHHhhcccchHHHHHHHHHHHHHHHHHHHHhhhccccCCC
Q 007580 86 FGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPN 165 (597)
Q Consensus 86 ~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~lsD~~~GR~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~ 165 (597)
-++...+..|+... |+++...+..=+.-.+....++.+..++.+| +|--|+-+++.....+.+.++..+...+.. |
T Consensus 275 Lsf~~lmt~yl~~~-G~s~~~igi~R~~gav~Gl~gT~~~p~l~~r-iGlvr~G~~~l~~q~~~L~~~v~~~~~~~~-~- 350 (432)
T PF06963_consen 275 LSFGGLMTAYLKSQ-GYSPSVIGIFRGLGAVFGLLGTWVYPWLMKR-IGLVRAGLWSLWWQWVCLALCVVSFWAPGS-P- 350 (432)
T ss_pred hcCcHHHHHHHHHC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hcchhhHHHHHHHHHHHHHHHHHHHhcCCC-C-
Confidence 34455677888876 9999999999999899999999999999999 799999999988888777777665432210 0
Q ss_pred CCcccccccccCCCCCccchhHHHHHHHHHHHHHhhhchhhhhhhhhhccCCCCCchhhhhhhhHHHHHHHHHHHHHHHH
Q 007580 166 QDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVA 245 (597)
Q Consensus 166 ~~~c~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~R~~~~~~~~~~~~lg~~l~ 245 (597)
....+...++.+..+.=+|-=+.--+..-++-|..|+++ |+...+.-+...++.-.+.
T Consensus 351 ----------------~~~~s~~~l~~gi~~SR~GLW~fDL~~~qi~Qe~V~~~~------Rg~v~gvq~sl~~lf~ll~ 408 (432)
T PF06963_consen 351 ----------------FSSISAYLLLGGIALSRIGLWSFDLAVTQIMQENVPESE------RGAVSGVQNSLQSLFELLS 408 (432)
T ss_pred ----------------chhhHHHHHHHHHHHHHHHHHhhhHHHHHhhcccCCHHH------hhHHHHHHHHHHHHHHHHH
Confidence 011345566666666666666777788888889999988 9999999888888887777
Q ss_pred HHHHH
Q 007580 246 FTLVV 250 (597)
Q Consensus 246 p~i~~ 250 (597)
..++-
T Consensus 409 ~~~~i 413 (432)
T PF06963_consen 409 FVLTI 413 (432)
T ss_pred HHHHh
Confidence 65554
No 265
>PF02487 CLN3: CLN3 protein; InterPro: IPR003492 Batten's disease, the juvenile variant of neuronal ceroid lipofuscionosis (NCL), is a recessively inherited disorder affecting children of 5-10 years of age. The disease is characterised by progressive loss of vision, seizures and psychomotor disturbances. Biochemically, the disease is characterised by lysosomal accumulation of hydrophobic material, mainly ATP synthase subunit C, largely in the brain but also in other tissues. The disease is fatal within a decade []. Mutations in the CLN3 gene are believed to cause Batten's disease []. The CLN3 gene, with a predicted 438-residue product, maps to chromosome p16p12.1. The gene contains at least 15 exons spanning 15kb and is highly conserved in mammals []. A 1.02kb deletion in the CLN3 gene, occurring in either one or both alleles, is found in 85% of Batten disease chromosomes causing a frameshift generating a predicted translated product of 181 amino acid residues [, ]. 22 other mutations, including deletions, insertions and point mutations, have been reported. It has been suggested that such mutations result in severely truncated CLN3 proteins, or affect its structure/conformation [, ]. CLN3 proteins, which are believed to associate in complexes, are heavily glycosylated lysosomal membrane proteins [], containing complex Asn-linked oligosaccharides []. Extensive glycosylation is important for the stability of these lysosomal proteins in the highly hydrolytic lysosomal lumen. Lysosomal sequestration of active lysosomal enzymes, transport of degraded molecules from the lysosomes, and fusion and fission between lysosomes and other organelles. The CLN3 protein is a 43kDa, highly hydrophobic, multi-transmembrane (TM), phosphorylated protein []. Hydrophobicity analysis predicts 6-9 TM segments, suggesting that CLN3 is a TM protein that may function as a chaperone or signal transducer. The majority of putative phosphorylation sites are found in the N-terminal domain, encompassing 150 residues []. Phosphorylation is believed to be important for membrane compartment interaction, in the formation of functional complexes, and in regulation and interactions with other proteins []. CLN3 contains several motifs that may undergo lipid post-translational modifications (PTMs). PTMs contribute to targeting and anchoring of modified proteins to distinct biological membranes []. There are three general classes of lipid modification: N-terminal myristoylation, C-terminal prenylation, and palmitoylation of cysteine residues. Such modifications are believed to be a common form of PTM occurring in 0.5% of all cellular proteins, including brain tissue []. The C terminus of the CLN3 contains various lipid modification sites: C435, target for prenylation; G419, target for myristoylation; and C414, target for palmitoylation []. Prenylation results in protein hydrophobicity, influences interaction with upstream regulatory proteins and downstream effectors, facilitates protein-protein interaction (multisubunit assembly) and promotes anchoring to membrane lipids. The prenylation motif, Cys-A-A-X, is highly conserved within CLN3 protein sequences of different species []. Species with known CLN3 protein homologues include: Homo sapiens, Canis familiaris, Mus musculus, Saccharomyces cerevisiae and Drosophila melanogaster.; GO: 0016020 membrane
Probab=95.41 E-value=0.16 Score=53.73 Aligned_cols=63 Identities=8% Similarity=0.060 Sum_probs=54.2
Q ss_pred hhHHHHHHHHHHHHHhhhchhhhhhhhhhccCCCCCchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhh
Q 007580 185 WQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQ 253 (597)
Q Consensus 185 ~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~R~~~~~~~~~~~~lg~~l~p~i~~~i~ 253 (597)
++.+..++..+..|+..|+...+....+.|..++++ |...++...++-.+|..++..++-++.
T Consensus 333 psi~ivf~lif~eGLlGGa~YVNtF~~I~~~~~~~~------REFslg~vsvsds~GI~lAgll~l~le 395 (402)
T PF02487_consen 333 PSIWIVFVLIFYEGLLGGASYVNTFYRISEEVPPED------REFSLGAVSVSDSLGILLAGLLGLPLE 395 (402)
T ss_pred hHHHHHHHHHHHHHHhhhHHHHHHHHHHHhcCCHHH------HHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 356667777788999999999999999999999888 999999999999999998888776654
No 266
>TIGR00926 2A1704 Peptide:H+ symporter (also transports b-lactam antibiotics, the antitumor agent, bestatin, and various protease inhibitors).
Probab=95.33 E-value=6.8 Score=44.62 Aligned_cols=253 Identities=11% Similarity=-0.012 Sum_probs=151.0
Q ss_pred HHHHHhhCCChHHHHHHHHHHHHHHHHHhhhhHHHhhcccchHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCcccccc
Q 007580 94 TFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDRIS 173 (597)
Q Consensus 94 ~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~lsD~~~GR~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~c~~~~ 173 (597)
.+..--.+...........++.....+..++....+|..-|+...+..-.+..+++.+...+.+.. .. |
T Consensus 9 iLvlYl~~~lg~~~~~A~~i~~~f~~l~yl~pilGg~iAD~~lG~~~tIl~~~ii~~lG~~llai~-a~-~--------- 77 (654)
T TIGR00926 9 ILVLYFLNFLGFSESTSTVLFHTFTYLCYLTPLIGAIIADGWLGKFKTILYLSIVYVVGHALLSFG-AI-P--------- 77 (654)
T ss_pred HHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhc-cC-c---------
Confidence 333333444445567788899999999999999999986666677777777777777777665431 00 0
Q ss_pred cccCCCCCccchhHHHHHHHHHHHHHhhhchhhhhhhhhhccCCCCCchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhh
Q 007580 174 QLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQ 253 (597)
Q Consensus 174 ~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~R~~~~~~~~~~~~lg~~l~p~i~~~i~ 253 (597)
.........+..+.+.++.++..++-+.+.+++++.-++ ..+.+..++|++..+.+.+ |.+++..+.
T Consensus 78 ---------~~~~~~~~~~~l~gLaLia~G~GgiKp~vsaf~gdqf~~---~~~~~~~s~F~~fY~~iNi-GSlis~~i~ 144 (654)
T TIGR00926 78 ---------SSGHPLHDLLDLLGLALIALGTGGIKPCVSAFGGDQFEE---RQLSLRSRFFSFFYFAINA-GSLISTIIT 144 (654)
T ss_pred ---------ccccchHHHHHHHHHHHHHhhccccccCchhhhHhhcCc---cchhHHHHHHHHHHHHHHH-HHHHHHHHH
Confidence 012234455677778899999999999999999987652 4455799999999887776 456666666
Q ss_pred hccc-hHH------HHH-HHHHHHHHHHHHHHHhcCcccccCCCCCchhhHHHHHHHHHHhhhcccCccccccccccCCC
Q 007580 254 MEHG-WGS------AFG-ALAIAMGISNMLFFIGTPLYRHRLPGGSPLTRVAQVLVAAFRKRHAAFSSSELIGLYEVPGK 325 (597)
Q Consensus 254 ~~~g-w~~------~f~-i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 325 (597)
.... +.. .+. ..++.+++.++.++.+...++..++.+.......++.....+.++.+
T Consensus 145 ~~l~~~~~~fg~~~~~~~aF~i~~i~m~ia~lvf~~g~k~y~~~~p~gs~l~~v~~vi~~a~~~~--------------- 209 (654)
T TIGR00926 145 PILRGDVGCFGCQDCYPLAFGVPAILMILALIVFMAGSKMYKKKPPKGNIVSKVIKCIVTALRKR--------------- 209 (654)
T ss_pred HHHHHhhcccccCcchHHHHHHHHHHHHHHHHHHHHhccccCCCCCCccHHHHHHHHHHHHHHHh---------------
Confidence 5443 321 233 45555556666666666555544443332222233322221111000
Q ss_pred cccccCCcccccCCcchhhHHHhhhhhcccCCCCCCccc--cchhhhhhhHhHhhhhhHHHHHHHHHHHhcchhhHHHHH
Q 007580 326 HSAIKGSGKIAHTDDFRCLDKAALELKEDVINPSPWKLC--TVTQVEEVKTLVRLVPIPACTIMLNVILTEFLTLSVQQA 403 (597)
Q Consensus 326 ~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 403 (597)
..+ ........|... .....++++...+++.++...+.+++.+.++......+.
T Consensus 210 ---------~~~---------------~~~~~~~~~ld~a~~~~~~~~V~evkrll~il~l~i~~~ifw~~~~Q~~s~~~ 265 (654)
T TIGR00926 210 ---------FST---------------RSEHWPLHWLDYAKDKHDIRMIRSTKRLLRVLVLFIPLPMFWALFDQQGSRWT 265 (654)
T ss_pred ---------hcc---------------CCcccchhHHHHhccccccchHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHH
Confidence 000 000000112111 112224567777888888888888888888766666666
Q ss_pred hhhccc
Q 007580 404 YTMNTH 409 (597)
Q Consensus 404 ~~~~~~ 409 (597)
..+++.
T Consensus 266 ~qa~~m 271 (654)
T TIGR00926 266 LQATRM 271 (654)
T ss_pred HHHHHh
Confidence 666644
No 267
>KOG3098 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.02 E-value=1.3 Score=47.86 Aligned_cols=119 Identities=19% Similarity=0.089 Sum_probs=75.2
Q ss_pred HHHHHHHhhhhHHHhhcc--cchHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCcccccccccCCCCCccchhHHHHHH
Q 007580 115 LGISQASSVLGGFLADAY--LGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYT 192 (597)
Q Consensus 115 ~~~~~~~~~~~G~lsD~~--~GR~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~l~~ 192 (597)
..+..++.++.+.+++|. +||++++.++.+++.++.++.-+... ...|- +.++ .-....+++.....+
T Consensus 289 g~g~v~~g~~~~~l~~rir~fg~~~~~~~~~~~~~~~~~li~l~~p--~dap~----~~t~----~~~~~~~~~~~~~~i 358 (461)
T KOG3098|consen 289 GLGEVIGGLDFSILSKRIRGFGRKPTVLIGIIIHLIGFLLIHLSFP--NDAPL----RPTD----SPPLLFTPSYYLALI 358 (461)
T ss_pred hHHHHHHHHHHHHHhhhhhhcccCcchhHHHHHHHHHHHHHhcccc--ccCCC----CCCc----ccccccccchhHHHH
Confidence 334444555566666542 79999999999999988888776521 11110 0000 000111123444455
Q ss_pred HHHHHHHhhhchhhhhhhhhhccCCCCCchhhhhhhhHHHHHHHHHHHHHHHHHHHHH
Q 007580 193 VLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVV 250 (597)
Q Consensus 193 ~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~R~~~~~~~~~~~~lg~~l~p~i~~ 250 (597)
.-++.|++-+........++++.+ +++ |..+++++-+-..++..++.....
T Consensus 359 i~~l~G~~D~~~~t~~~~ii~~~~-~~~------~~~~fsi~kfyq~~~s~v~~f~~~ 409 (461)
T KOG3098|consen 359 IGFLLGFGDACFNTQRYVIIALLY-PDD------RAQAFSLFKFYQSVASCVAFFFSP 409 (461)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHh-cCc------hHHHHHHHHHHHHHHHHHHhhhhh
Confidence 557899999999999999999999 455 788888876666666665444333
No 268
>PF06813 Nodulin-like: Nodulin-like; InterPro: IPR010658 This entry represents a conserved region within plant nodulin-like proteins and a number of uncharacterised proteins.
Probab=94.97 E-value=0.39 Score=47.55 Aligned_cols=62 Identities=13% Similarity=0.027 Sum_probs=45.7
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 007580 463 LSAYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPDAMKSIGSAYAALAGGLGCFAASILNSIIK 525 (597)
Q Consensus 463 ~s~~~l~~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~gl~~~~~~lg~~lg~~l~~~v~ 525 (597)
.+.+.+....++.+.+..+..........+.+|+ .||.+.|+.-...++++.+-+.+...+.
T Consensus 94 ~~~~~~~~~~~l~~~s~~~~~ta~lvt~~~NFP~-~RG~vvgilk~~~GLSaai~t~i~~~~f 155 (250)
T PF06813_consen 94 LPVWLMCLFLFLGGNSSCWFNTASLVTCVRNFPR-SRGTVVGILKGFFGLSAAIFTQIYSAFF 155 (250)
T ss_pred cchHHHHHHHHHHcccHHHhhhHHHHHHHHhCcc-ccCceehhhhHHHHhHHHHHHHHHHHHc
Confidence 3455555555556667666667767777789996 6999999999999999888777765543
No 269
>KOG3097 consensus Predicted membrane protein [Function unknown]
Probab=93.93 E-value=0.54 Score=47.74 Aligned_cols=120 Identities=17% Similarity=0.089 Sum_probs=72.2
Q ss_pred ccccCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHhhhhHHHhhcccchHHHHH
Q 007580 61 DLSKTGGWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIA 140 (597)
Q Consensus 61 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~lsD~~~GR~~~~~ 140 (597)
++.+++.-|.++.+....++...++.+ ..++...+..++|..+. + .-...-....++.+.+..+ +|-|+++.
T Consensus 21 ~r~~~~~~knv~i~s~~fl~~f~a~~g-l~nlq~~vn~~lg~~sl--~----~~y~~l~~s~m~~~~~Ir~-~g~K~tm~ 92 (390)
T KOG3097|consen 21 RRKRLGILKNVLILSIAFLLTFTAYLG-LQNLQTSVNYDLGTVSL--G----ALYLSLIDSSMFMPLLIRF-LGTKWTMV 92 (390)
T ss_pred cccccchhhhhhHHHHHHHHHHHHHHH-HHHHHHHHhcCcccchh--h----hhhHHHHHHHHHHHHHHHH-HhhHHHHH
Confidence 345555566677776666665555443 34555554444433221 1 1112233344555577776 89999999
Q ss_pred HHHHHHHHHHHHHHHhhhccccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhhchhhhhhhhhhccCC
Q 007580 141 IFTTIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFD 217 (597)
Q Consensus 141 ~~~~l~~~g~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~~~ 217 (597)
++...+......--. +.+..++.+-...|+|.+.++..-.+++++.-.
T Consensus 93 lav~~Y~lyiA~Nl~-----------------------------pr~~tlVPa~~~~G~aa~p~W~SkgtYlT~~g~ 140 (390)
T KOG3097|consen 93 LAVFPYALYIAANLE-----------------------------PRYETLVPAGLVLGMAAGPIWASKGTYLTPMGQ 140 (390)
T ss_pred HHHHHHHHHHHhhcc-----------------------------hhHHhhccHHHhhccccccccccCcceecHHHH
Confidence 887766543322211 355667777788999999999888888876654
No 270
>KOG2325 consensus Predicted transporter/transmembrane protein [General function prediction only]
Probab=93.87 E-value=0.6 Score=50.52 Aligned_cols=132 Identities=13% Similarity=0.116 Sum_probs=84.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhcCccccccCcCccc-hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchh
Q 007580 419 LQRVGIGLAVSILSVIWAGIFERYRRNYAISHGYEFSFLTAMPDL-SAYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPDA 497 (597)
Q Consensus 419 ~~~i~~G~~l~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-s~~~l~~~~~l~g~g~~~~~~~~~~~~~~~~P~~ 497 (597)
.+-+..|.++++++..+...++.. + . ..+++....++.|+|.+-.. ..=.++++..-.+
T Consensus 102 k~Pli~s~ii~~~g~llY~~l~~~------------------~-~~~~y~mL~~R~l~Gvg~~n~a-~lR~Y~a~~s~~~ 161 (488)
T KOG2325|consen 102 KKPLIVSFLIAIIGNLLYLALAYV------------------P-NGVKYLMLVARILTGVGVGNFA-VLRAYIADASTVE 161 (488)
T ss_pred ccCHHHHHHHHHHHHHHHHHHHhc------------------c-cchHHHHHHHHHHcCcCcccHH-HHHHHHHhccCcc
Confidence 344677888888888777555422 2 2 56778889999998854333 3455666655556
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCCCCCccccCCCCcchhHHHHHHHHHHHHHHHHHHHhhhcccc
Q 007580 498 MKSIGSAYAALAGGLGCFAASILNSIIKSVTGNPKKGQPNWLAQNINTGRFDYLYWLLAVLSVINFCAFLYSAYRYKY 575 (597)
Q Consensus 498 ~rg~~~gl~~~~~~lg~~lg~~l~~~v~~~~g~~~~~~~~w~~~~l~~~~~~~~f~~~a~l~~l~~~~~~~~~~~~~~ 575 (597)
.|.++++..+....+|.++||.+...+..... .+..|++. +.-+.|...=|+.+++.++.+++..++.+|..+
T Consensus 162 dR~rA~a~~~~~~vlg~ilGp~~q~~f~~Lg~----~G~~i~~~-~~~n~YTap~w~m~i~~i~~~v~i~~~f~E~~~ 234 (488)
T KOG2325|consen 162 DRPRAFAATSGGFVLGIILGPTIQLAFTPLGE----KGFMILPG-LIFNMYTAPAWLMAILWIIYIVIILFFFKEVYR 234 (488)
T ss_pred chHHHHHHhhhHHHHHHHHhHHHHHHHhhhcC----CceEEcCc-ceEEecchHHHHHHHHHHHHHHHHHhheeeccc
Confidence 67788888888888888888887665443211 11123331 333335555678888888888888888776543
No 271
>PF03092 BT1: BT1 family; InterPro: IPR004324 Members of this family are transmembrane proteins. Several are Leishmania putative proteins that are thought to be pteridine transporters [, ]. This family also contains five putative Arabidopsis thaliana proteins of unknown function as well as two predicted prokaryotic proteins (from the cyanobacteria Synechocystis and Synechococcus).
Probab=93.83 E-value=0.86 Score=49.23 Aligned_cols=89 Identities=16% Similarity=0.188 Sum_probs=62.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhc---chhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCCCCCcccc
Q 007580 465 AYWLLIQYCLIGIAEVFCIVGLLEFLYEEA---PDAMKSIGSAYAALAGGLGCFAASILNSIIKSVTGNPKKGQPNWLAQ 541 (597)
Q Consensus 465 ~~~l~~~~~l~g~g~~~~~~~~~~~~~~~~---P~~~rg~~~gl~~~~~~lg~~lg~~l~~~v~~~~g~~~~~~~~w~~~ 541 (597)
.......+++..+|..+.-....+.+.|.. |.+ ||...+....+..+|+.++..+.|.+....+
T Consensus 86 ~~~~~~~l~la~~g~a~~DV~aDa~vvE~~~~~p~~-~g~lqS~~~~~~~~G~lv~~~l~G~l~~~~~------------ 152 (433)
T PF03092_consen 86 AAIAVVLLFLASFGYAFADVAADALVVELARREPES-RGDLQSFVWGVRSVGSLVGSLLSGPLLDSFG------------ 152 (433)
T ss_pred hhhHHHHHHHHHHHHHHHHHhhhHHHHHHhhcCCch-hHHHHHHHHHHHHHHHHHHHHhhhhhhhcCC------------
Confidence 334445556667777777777777777654 555 8888999999999999999999887665433
Q ss_pred CCCCcchhHHHHHHHHHHHHHHHHHHHhhhc
Q 007580 542 NINTGRFDYLYWLLAVLSVINFCAFLYSAYR 572 (597)
Q Consensus 542 ~l~~~~~~~~f~~~a~l~~l~~~~~~~~~~~ 572 (597)
+...|.+.+++.++..+..+++..+
T Consensus 153 ------~~~~f~i~~~~~~l~~~~~~~~~~e 177 (433)
T PF03092_consen 153 ------PQGVFLISAALPLLMLIVALFLLEE 177 (433)
T ss_pred ------CeEEehHHHHHHHHHHHHHHHhhhh
Confidence 1234667677777666665666555
No 272
>KOG3810 consensus Micronutrient transporters (folate transporter family) [Coenzyme transport and metabolism]
Probab=92.23 E-value=4.7 Score=41.58 Aligned_cols=99 Identities=13% Similarity=0.078 Sum_probs=62.0
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCCCCCccccC
Q 007580 463 LSAYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPDAMKSIGSAYAALAGGLGCFAASILNSIIKSVTGNPKKGQPNWLAQN 542 (597)
Q Consensus 463 ~s~~~l~~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~gl~~~~~~lg~~lg~~l~~~v~~~~g~~~~~~~~w~~~~ 542 (597)
..+++.-..|+++.....+..+....-+++...++.-|...|+++++.-+ +=+++.-++.+..| - -++-.
T Consensus 324 ~~Iw~~Ya~yvlfr~~y~l~itiA~~~iA~nL~~e~~gLvFGiNTFvAl~---lQsilT~iVvd~~g--~-----~L~ir 393 (433)
T KOG3810|consen 324 QHIWVCYAGYVLFRVIYQLTITIATFQIARNLSSELFGLVFGINTFVALI---LQSILTLIVVDDRG--L-----GLDIR 393 (433)
T ss_pred cceehhhhhHHHHHhhHhhhhhHHHHHHHHhhhhhhheeeeehHHHHHHH---HHHhheEEEEcccc--c-----CCCcc
Confidence 46788888999998888888888888888888888888888887765433 33333333333222 0 01111
Q ss_pred CCCcchhHHHHHHHHHHHHHHHHHHHhhh
Q 007580 543 INTGRFDYLYWLLAVLSVINFCAFLYSAY 571 (597)
Q Consensus 543 l~~~~~~~~f~~~a~l~~l~~~~~~~~~~ 571 (597)
.+-.-|..+|.+++++.++...+.+...+
T Consensus 394 ~Q~~~Y~~Yf~v~~~i~~~~~~~~~~~~~ 422 (433)
T KOG3810|consen 394 TQFVVYSSYFIVLGVIFLIGFGIEYLMCR 422 (433)
T ss_pred eeEEEEeehHHHHHHHHHHHHHHHHHHhh
Confidence 11113445688888888888776554433
No 273
>KOG4332 consensus Predicted sugar transporter [Carbohydrate transport and metabolism]
Probab=91.64 E-value=0.84 Score=45.11 Aligned_cols=140 Identities=13% Similarity=0.086 Sum_probs=86.2
Q ss_pred HHHHHHHHHHHHHHHhhhhHHHhhcccchHHH---HHHHHHHHHHHHHHHHHhhhccccCCCCCcccccccccCCCCCcc
Q 007580 107 SSNAVNNFLGISQASSVLGGFLADAYLGRYWT---IAIFTTIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAK 183 (597)
Q Consensus 107 a~~~~~~~~~~~~~~~~~~G~lsD~~~GR~~~---~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~ 183 (597)
-|.+.+.|.++..+|+-+...+..| .|.++ +.+..++..+.+.+..+... ..| +
T Consensus 284 hGfiFatFMlASmLGSSla~Rl~s~--s~~~ve~ymqivf~vs~a~l~Lpilt~~---vsP------------------~ 340 (454)
T KOG4332|consen 284 HGFIFATFMLASMLGSSLASRLLSR--SSPKVESYMQIVFLVSIAALLLPILTSS---VSP------------------S 340 (454)
T ss_pred chhHHHHHHHHHHHhhHHHHHHHhc--CCcccchHHHHHHHHHHHHHHHHHHHhc---cCC------------------C
Confidence 3788888888888888888777766 33332 22222222222221111111 111 1
Q ss_pred chhHHHHHHHHHHHHHhhhchhhhhhhhhhccCCCCCchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhccchHHHHH
Q 007580 184 SWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFG 263 (597)
Q Consensus 184 ~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~R~~~~~~~~~~~~lg~~l~p~i~~~i~~~~gw~~~f~ 263 (597)
+.+...-+++..++-.+.|..+|.+.-+-.+..|+++ |...++++....++-.-++-...--=....+-|..|.
T Consensus 341 kes~~~s~i~F~~~E~cvGlfwPSimkmRsqyIPEea------rstimNfFRvPLnifvClvLynlh~~~~p~~tr~mf~ 414 (454)
T KOG4332|consen 341 KESPSESLIGFCLFEACVGLFWPSIMKMRSQYIPEEA------RSTIMNFFRVPLNIFVCLVLYNLHVDAFPTTTRNMFG 414 (454)
T ss_pred cCCchHHHHHHHHHHHHHhhcchHHHHHHHhhCCHHH------HhhhhhheechhhHhhhhhheecccccCccccchhhh
Confidence 2334445677778888999999999999999999998 9999999999888766543211000001235677888
Q ss_pred HHHHHHHHHHHH
Q 007580 264 ALAIAMGISNML 275 (597)
Q Consensus 264 i~~~~~~~~~~~ 275 (597)
+..+...++.+.
T Consensus 415 icS~~~~~a~i~ 426 (454)
T KOG4332|consen 415 ICSAFLFVASIL 426 (454)
T ss_pred hhHHHHHHHHHH
Confidence 887766655443
No 274
>PF01770 Folate_carrier: Reduced folate carrier; InterPro: IPR002666 The reduced folate carrier (a transmembrane glycoprotein) transports reduced folate into mammalian cells via the carrier mediated mechanism (as opposed to the receptor mediated mechanism) it also transports cytotoxic folate analogues used in chemotherapy [], such as methotrexate (MTX). Mammalian cells have an absolute requirement for exogenous folates which are needed for growth, and biosynthesis of macromolecules [].; GO: 0005542 folic acid binding, 0008518 reduced folate carrier activity, 0006810 transport, 0016020 membrane
Probab=89.54 E-value=32 Score=36.67 Aligned_cols=63 Identities=19% Similarity=0.270 Sum_probs=51.1
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 007580 463 LSAYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPDAMKSIGSAYAALAGGLGCFAASILNSIIKS 526 (597)
Q Consensus 463 ~s~~~l~~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~gl~~~~~~lg~~lg~~l~~~v~~ 526 (597)
.++.++-+.-++.|++... -...+++++..+|++.--++++......-+|.++|+++...+..
T Consensus 92 ~sv~~mq~~q~~yg~~~a~-evay~sYiys~v~~~~yq~vts~~raa~l~g~~~s~~lgQllvs 154 (412)
T PF01770_consen 92 TSVLAMQLMQFFYGLATAA-EVAYYSYIYSVVDKEHYQKVTSYTRAATLVGRFISSLLGQLLVS 154 (412)
T ss_pred CcHHHHHHHHHHHHHHHHH-HHHHHHHheeecCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5677777777777776543 56778999999999999999999999999999999988887654
No 275
>PF05978 UNC-93: Ion channel regulatory protein UNC-93; InterPro: IPR010291 The proteins in this family are represented by UNC-93 from Caenorhabditis elegans. UNC-93 colocalizes with SUP-10 and SUP-9 within muscle cells. Genetic studies suggest that these three proteins forms complex that coordinates muscle contraction. The function of UNC-93 is not known but is most likely an ion channel regulatory protein [].
Probab=88.53 E-value=5 Score=36.66 Aligned_cols=63 Identities=10% Similarity=0.008 Sum_probs=55.2
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 007580 463 LSAYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPDAMKSIGSAYAALAGGLGCFAASILNSIIK 525 (597)
Q Consensus 463 ~s~~~l~~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~gl~~~~~~lg~~lg~~l~~~v~ 525 (597)
...+.+++.-++.|+|..+.....-.++.+...++.|++..+++......+.++|.++.-.+.
T Consensus 87 ~~~~~l~~~s~l~G~~~a~lW~aqg~ylt~~s~~~~~~~~~~ifw~i~~~s~i~G~~~~~~~~ 149 (156)
T PF05978_consen 87 PNSYTLYPASALLGFGAALLWTAQGTYLTSYSTEETIGRNTGIFWAIFQSSLIFGNLFLFFIF 149 (156)
T ss_pred hhHHHHHHHHHHHhhhhHHhhHhhhHHHHHcCCHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345677888899999999999999999999999999999999999999999998888766554
No 276
>KOG3880 consensus Predicted small molecule transporter involved in cellular pH homeostasis (Batten disease protein in human) [General function prediction only]
Probab=86.38 E-value=35 Score=34.88 Aligned_cols=60 Identities=13% Similarity=0.210 Sum_probs=42.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007580 464 SAYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPDAMKSIGSAYAALAGGLGCFAASILNSI 523 (597)
Q Consensus 464 s~~~l~~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~gl~~~~~~lg~~lg~~l~~~ 523 (597)
+++.....+++-|+-.+..+.+..--+.+..+++.|-.+|+.....-++|-.++.++.-.
T Consensus 341 si~ivf~lI~~EGLlGGasYVNTf~~i~~e~~pd~rEfamsavs~sDS~Gi~lA~~lalp 400 (409)
T KOG3880|consen 341 SIWIVFALILFEGLLGGASYVNTFHNIHKETEPDVREFAMSAVSISDSIGIFLAGLLALP 400 (409)
T ss_pred HHHHHHHHHHHHhhcCchHHHHHHHHHhhcCCchHHHHhHhhheecchhhHHHHHHHhcc
Confidence 444444444445554455566666667778889999999999999999998888877443
No 277
>TIGR00939 2a57 Equilibrative Nucleoside Transporter (ENT).
Probab=85.83 E-value=6.5 Score=42.48 Aligned_cols=156 Identities=10% Similarity=-0.021 Sum_probs=83.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-CCChH-HHHHHHHHHHHHHHHHhhhhHHHhhcccchH-HHHHHHHHH
Q 007580 69 IAALFIFGNEMAERMAYFGLSVNMVTFMFYVM-HKSFA-DSSNAVNNFLGISQASSVLGGFLADAYLGRY-WTIAIFTTI 145 (597)
Q Consensus 69 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~-~~s~~-~a~~~~~~~~~~~~~~~~~~G~lsD~~~GR~-~~~~~~~~l 145 (597)
|.+|...+..++..+.+..+.+.........- +.++. ..-.....|.++=.+|..+..+.. +-.+| +.+.+..+.
T Consensus 269 kki~~~~~~vf~~F~vTL~vFPgv~~~i~~~~~~~~~~~~~~i~~~~fNvgD~vGR~~~~~~~--~p~~~~~~l~i~s~~ 346 (437)
T TIGR00939 269 TKVWLLAFSVVFVFTVTLSVFPAITTAVTSSGLGLSNWFYPIICFLLFNLFDWLGRSLTSKFM--WPDEDSRWLPILSFL 346 (437)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCceEEEeeccCCCCCccHHHHHHHHHHHHHHHHHhhhhheeE--eeCCCccchHHHHHH
Confidence 44555555555554444444444322222221 12222 333555566666666665444321 01222 234444455
Q ss_pred HHHHHHHHHHhhhccccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhhchhhhhhhhhhccCCCCCchhhh
Q 007580 146 YLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKT 225 (597)
Q Consensus 146 ~~~g~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~ 225 (597)
-.+...+..++...+..+ .+.--++-+..++..++.|+..|-.......+..+..++++
T Consensus 347 R~iFIPlf~lcn~~~~~~----------------~p~~~~~d~~~~~~~~l~gltnGy~~s~~m~~~p~~v~~~e----- 405 (437)
T TIGR00939 347 RVLFIPLFLLCNYPQRSR----------------LPVFFPGDAYFIILMLLFGFSNGYLGSLSMCLAPRQVDPHE----- 405 (437)
T ss_pred HHHHHHHHHHhcCCcccc----------------CCeeecccHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCHHH-----
Confidence 555444444432211000 00000244566677889999999999999999989888776
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHH
Q 007580 226 HLDRFFNFFYLSVTVGAIVAFTL 248 (597)
Q Consensus 226 ~R~~~~~~~~~~~~lg~~l~p~i 248 (597)
|..+-.+..++.++|-.+|..+
T Consensus 406 -~e~aG~~~~~~l~~Gl~~Gs~l 427 (437)
T TIGR00939 406 -REVAGALMVIFLLVGLALGAVL 427 (437)
T ss_pred -HHHHHHHHHHHHHHHHHHHHHH
Confidence 7777777777777777766544
No 278
>TIGR00769 AAA ADP/ATP carrier protein family. These proteins are members of the ATP:ADP Antiporter (AAA) Family (TC 2.A.12), which consists of nucleotide transporters that have 12 GES predicted transmembrane regions. One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.
Probab=84.67 E-value=66 Score=35.13 Aligned_cols=70 Identities=16% Similarity=0.114 Sum_probs=51.5
Q ss_pred HHHhhhchhhhhhhhhhccCCCCCchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHH
Q 007580 197 TGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGI 271 (597)
Q Consensus 197 ~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~R~~~~~~~~~~~~lg~~l~p~i~~~i~~~~gw~~~f~i~~~~~~~ 271 (597)
.++........--..+.+++|.+++ |..+++-+....++...+..++++.+.+..||...-.+.-++.++
T Consensus 276 y~~~~nlve~~~k~~v~~~~p~~~~-----~~~f~g~~~~~~gi~tl~~~l~~~~l~~~~Gw~~~a~i~Pii~li 345 (472)
T TIGR00769 276 YGISINLVEVTWKSKLKAQYPSPNE-----YSAFMGDFSTWTGVVSVTMMLLSGNVIRKYGWLTAALITPLVMLL 345 (472)
T ss_pred HHHHHHHHHHHHHHHHHHHCCCHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 4455555556666788888876543 899999998888888877777779999999999876654444433
No 279
>KOG0637 consensus Sucrose transporter and related proteins [Carbohydrate transport and metabolism]
Probab=84.08 E-value=1.9 Score=45.98 Aligned_cols=92 Identities=10% Similarity=-0.157 Sum_probs=58.5
Q ss_pred ccCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-hCCCh----------------HHHHHHHHHHHHHHHHHhhhh
Q 007580 63 SKTGGWIAALFIFGNEMAERMAYFGLSVNMVTFMFYV-MHKSF----------------ADSSNAVNNFLGISQASSVLG 125 (597)
Q Consensus 63 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~-~~~s~----------------~~a~~~~~~~~~~~~~~~~~~ 125 (597)
..+..++.++.+++.+++..++.+...-+..-++-++ ++=++ ..-.|.+.++.....+.+++-
T Consensus 273 ~~~~mpr~m~~L~i~~lltW~a~f~f~LF~TDfmG~~vy~GDp~a~~~S~a~~~Y~~GV~~G~~GL~ins~~lgi~S~~~ 352 (498)
T KOG0637|consen 273 ALKVMPRPMRMLLIVTLLTWIAWFPFLLFDTDFMGREVYGGDPKADENSEAKKLYNAGVRMGCLGLMLNSIVLGIYSLLV 352 (498)
T ss_pred hHhhCChhHHHHHHHHHHHHHHHHHHHHHHHHhcchHhhCCCCCCCcchhHHHHHHhccccchHHHHHHHHHHHHHHHHH
Confidence 4456677888888888888888766555544444332 22111 112356666778888889999
Q ss_pred HHHhhcccchHHHHHHHHHHHHHHHHHHHH
Q 007580 126 GFLADAYLGRYWTIAIFTTIYLAGLTGITL 155 (597)
Q Consensus 126 G~lsD~~~GR~~~~~~~~~l~~~g~~~~~~ 155 (597)
-+++|+ +|-|+.+..+...+.++..+..+
T Consensus 353 ~~l~~~-~g~r~~y~~~~~~f~~~~~~~gl 381 (498)
T KOG0637|consen 353 EKLSRK-FGTRKRYWGGVNAFGLATGLAGL 381 (498)
T ss_pred HHHHHh-cCcceEEeehhHHHHHHHHHHhh
Confidence 999998 89665555555545555554443
No 280
>COG3202 ATP/ADP translocase [Energy production and conversion]
Probab=83.44 E-value=73 Score=34.68 Aligned_cols=168 Identities=10% Similarity=0.047 Sum_probs=100.5
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCC---hHHHHHHHHHHHH-HHHHHhhhhHHHhhcccchHHHHHHH
Q 007580 67 GWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKS---FADSSNAVNNFLG-ISQASSVLGGFLADAYLGRYWTIAIF 142 (597)
Q Consensus 67 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s---~~~a~~~~~~~~~-~~~~~~~~~G~lsD~~~GR~~~~~~~ 142 (597)
-++.++.+.+..+|-.+.++.+.+ +.+.+.++ +.....+=..... .+.+..++-+++.++ +-|.+++.+.
T Consensus 25 E~~kflpl~Ll~f~I~~ny~~lR~-----lKDslvv~~~gae~I~FlK~~~vlP~avif~~iy~kl~~~-lt~~~vF~~~ 98 (509)
T COG3202 25 ELKKFLPLALLFFCILFNYNLLRS-----LKDSLVVTRQGAESISFLKTWGVLPSAVIFTIIYQKLLNI-LTREKVFYII 98 (509)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-----hhhheEeecCcchhhHHHHHHHhchHHHHHHHHHHHHHhh-cCHHHHHHHH
Confidence 455667777777776666443322 34444443 3344455555555 677888899999998 7999999888
Q ss_pred HHHHHHHHHHHHHhhhcc--ccCCCCCcccccccccCCCCCccc----------hhHHHHHHHHHHHHHhhhchh-hhhh
Q 007580 143 TTIYLAGLTGITLCATMK--VFMPNQDNCDRISQLLGSCEPAKS----------WQMLYLYTVLYITGFGAAGIR-PCVS 209 (597)
Q Consensus 143 ~~l~~~g~~~~~~~~~~~--~~~~~~~~c~~~~~~~~~~~~~~~----------~~~~~l~~~~~l~g~g~g~~~-~~~~ 209 (597)
...+....+++++....- .+||+...-++-+ ...|.. +....+++. .-+-..... -.-.
T Consensus 99 ~~~F~~fF~LFa~Vi~P~~~~~hp~~~~~~~~~-----~~~p~~l~~~ili~~~Ws~s~~Yi~---aELWgslV~S~lFw 170 (509)
T COG3202 99 LGFFLGFFALFAFVIYPYKDILHPDPEFSRDLF-----ADLPMFLKWFILIVGEWSYSLFYIM---AELWGSLVLSLLFW 170 (509)
T ss_pred HHHHHHHHHHHHHHHhccccccCCCHHHHHHHH-----hhCCccceeeeEeecchHHHHHHHH---HHHHHHHHHHHHHH
Confidence 888888888877654310 1122100000000 001100 111122211 111112222 2456
Q ss_pred hhhhccCCCCCchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhh
Q 007580 210 SFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQM 254 (597)
Q Consensus 210 ~~~ad~~~~~~~~~~~~R~~~~~~~~~~~~lg~~l~p~i~~~i~~ 254 (597)
.+..|++..++ -.+++++++...|++..++..+..++.+
T Consensus 171 ~faNeitt~~e------akRFy~lf~l~~ni~lllsg~~~~~~~k 209 (509)
T COG3202 171 QFANEITTIEE------AKRFYPLFGLGANISLLLSGEVTSWLSK 209 (509)
T ss_pred HHHHHhhhHHH------hhhhHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 77889998888 7899999999999999999999988865
No 281
>PF13000 Acatn: Acetyl-coenzyme A transporter 1; InterPro: IPR024371 Acetyl-coenzyme A transporter 1 (also known as acatn) is a multipass transmembrane protein that appears to promote 9-O-acetylation in gangliosides [, ]. This entry represents acatn and its homologues.; GO: 0008521 acetyl-CoA transporter activity, 0016021 integral to membrane
Probab=82.79 E-value=79 Score=34.60 Aligned_cols=57 Identities=14% Similarity=0.110 Sum_probs=47.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 007580 466 YWLLIQYCLIGIAEVFCIVGLLEFLYEEAPDAMKSIGSAYAALAGGLGCFAASILNS 522 (597)
Q Consensus 466 ~~l~~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~gl~~~~~~lg~~lg~~l~~ 522 (597)
..++.++++..+..-..+.+..+|-++++.+..=|++|.+.|...++|+.--..++-
T Consensus 406 ~lvI~~~~l~sf~stvmFVai~AFharISDP~IGGTYMTLLNTvSNLGGtWP~~~vL 462 (544)
T PF13000_consen 406 LLVIIQHVLSSFMSTVMFVAIMAFHARISDPAIGGTYMTLLNTVSNLGGTWPRTFVL 462 (544)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhccCcccchHHHHHHHHHHhcCCCchHHHHH
Confidence 334567777778888888999999999999999999999999999999876555443
No 282
>PF03219 TLC: TLC ATP/ADP transporter; InterPro: IPR004667 These proteins are members of the ATP:ADP Antiporter (AAA) family, which consists of nucleotide transporters that have 12 GES predicted transmembrane regions. One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.; GO: 0005471 ATP:ADP antiporter activity, 0005524 ATP binding, 0006810 transport, 0016021 integral to membrane
Probab=75.27 E-value=1.3e+02 Score=32.94 Aligned_cols=168 Identities=13% Similarity=0.055 Sum_probs=95.0
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh---CCChHHHHHHHHHHHH-HHHHHhhhhHHHhhcccchHHHHHHH
Q 007580 67 GWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVM---HKSFADSSNAVNNFLG-ISQASSVLGGFLADAYLGRYWTIAIF 142 (597)
Q Consensus 67 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~---~~s~~~a~~~~~~~~~-~~~~~~~~~G~lsD~~~GR~~~~~~~ 142 (597)
-++.++.+.+..|+..+.+..+.. +.+.+ ....+....+=....+ ...+...+-.+++++ ++|.+++.+.
T Consensus 22 E~~k~~~l~~m~f~i~f~y~~lR~-----~KD~lvvt~~gae~I~flK~~~vlP~a~~f~~~y~kl~n~-~s~~~lFy~~ 95 (491)
T PF03219_consen 22 ELKKFLPLALMFFFILFNYTILRD-----LKDTLVVTAQGAEVIPFLKVWGVLPVAILFTILYSKLSNR-LSREKLFYII 95 (491)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-----hcCeEEEecCChhHHHHHHHHHHHHHHHHHHHHHHHHHhc-CCHHHHHHHH
Confidence 344567777777776666432221 22221 1133333333332333 455667788999999 8999999888
Q ss_pred HHHHHHHHHHHHHhhhc--cccCCCCCcccccccccCCCCCccchhHHHH-HH-------HHHH-HHHhhhchhh-hhhh
Q 007580 143 TTIYLAGLTGITLCATM--KVFMPNQDNCDRISQLLGSCEPAKSWQMLYL-YT-------VLYI-TGFGAAGIRP-CVSS 210 (597)
Q Consensus 143 ~~l~~~g~~~~~~~~~~--~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~l-~~-------~~~l-~g~g~g~~~~-~~~~ 210 (597)
...+.....+.++.... ..+||+. .|++. ......+...+ .+ ..++ .-+-.....+ .-.+
T Consensus 96 ~~~F~~fF~~f~~vlyP~~~~lhp~~-~~~~~-------~~~~~~~~~~~i~~~~~Wt~slfYv~aElwgsvvlSlLFW~ 167 (491)
T PF03219_consen 96 IIPFLGFFALFAFVLYPNRDILHPDA-FADKL-------LAILPPGFKGFIAMFRNWTFSLFYVMAELWGSVVLSLLFWG 167 (491)
T ss_pred HHHHHHHHHHHHHHHhhchhhcCCCH-HHHHh-------hhhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 87777766666654321 1233320 11100 00000111111 01 1111 1122222222 4578
Q ss_pred hhhccCCCCCchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhh
Q 007580 211 FGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQM 254 (597)
Q Consensus 211 ~~ad~~~~~~~~~~~~R~~~~~~~~~~~~lg~~l~p~i~~~i~~ 254 (597)
+..|.++.++ -.++++++..+.|+|..++..+..++.+
T Consensus 168 fAN~itt~~e------AKRfYpl~g~ganigli~sG~~~~~~~~ 205 (491)
T PF03219_consen 168 FANEITTVEE------AKRFYPLFGLGANIGLIFSGQLTSYFSS 205 (491)
T ss_pred HHHhcCCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8999999998 8899999999999999999999988877
No 283
>PF13000 Acatn: Acetyl-coenzyme A transporter 1; InterPro: IPR024371 Acetyl-coenzyme A transporter 1 (also known as acatn) is a multipass transmembrane protein that appears to promote 9-O-acetylation in gangliosides [, ]. This entry represents acatn and its homologues.; GO: 0008521 acetyl-CoA transporter activity, 0016021 integral to membrane
Probab=73.98 E-value=47 Score=36.23 Aligned_cols=58 Identities=12% Similarity=0.132 Sum_probs=44.4
Q ss_pred HHHHHHhhhchhhhhhhhhhccCCCCCchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhccc
Q 007580 194 LYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHG 257 (597)
Q Consensus 194 ~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~R~~~~~~~~~~~~lg~~l~p~i~~~i~~~~g 257 (597)
-.+..+..........++-+...+|.. -|+.|.+.+...|+|+-.-..+.-++.|...
T Consensus 412 ~~l~sf~stvmFVai~AFharISDP~I------GGTYMTLLNTvSNLGGtWP~~~vL~lVD~fT 469 (544)
T PF13000_consen 412 HVLSSFMSTVMFVAIMAFHARISDPAI------GGTYMTLLNTVSNLGGTWPRTFVLWLVDYFT 469 (544)
T ss_pred HHHHHHHHHHHHHHHHHHHhhccCccc------chHHHHHHHHHHhcCCCchHHHHHHHhhhcc
Confidence 344556667777888999999999999 8999999999999988655555555555443
No 284
>TIGR00939 2a57 Equilibrative Nucleoside Transporter (ENT).
Probab=73.77 E-value=1.4e+02 Score=32.33 Aligned_cols=60 Identities=10% Similarity=0.109 Sum_probs=50.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007580 464 SAYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPDAMKSIGSAYAALAGGLGCFAASILNSI 523 (597)
Q Consensus 464 s~~~l~~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~gl~~~~~~lg~~lg~~l~~~ 523 (597)
+-++.++..+++|+..+........+..+.++++.|..+..+..++..+|-.+|+.+.-.
T Consensus 371 ~d~~~~~~~~l~gltnGy~~s~~m~~~p~~v~~~e~e~aG~~~~~~l~~Gl~~Gs~l~~~ 430 (437)
T TIGR00939 371 GDAYFIILMLLFGFSNGYLGSLSMCLAPRQVDPHEREVAGALMVIFLLVGLALGAVLSFL 430 (437)
T ss_pred ccHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445566668889999999888888888889999999999999999999999999887443
No 285
>KOG1479 consensus Nucleoside transporter [Nucleotide transport and metabolism]
Probab=70.79 E-value=1.5e+02 Score=31.54 Aligned_cols=58 Identities=14% Similarity=0.209 Sum_probs=48.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHHHHHHHHH
Q 007580 464 SAYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPDAMKSIGSAYAALAGGLGCFAASILN 521 (597)
Q Consensus 464 s~~~l~~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~gl~~~~~~lg~~lg~~l~ 521 (597)
+-+|.+....++|+..+-.......++-+..|++.+-.+..+..+.-..|-++|+.+.
T Consensus 342 ~~~~~~~l~~~lglsnGYltsl~m~~aPk~v~~~e~e~aG~~m~~fl~~Gl~~G~~~s 399 (406)
T KOG1479|consen 342 SDGWFIFLMSLLGLSNGYLTSLIMMYAPKQVKPSEKEAAGNLMVFFLVGGLALGSLLS 399 (406)
T ss_pred CchHHHHHHHHHHhccchHhhheehhcCCCCChHHHHHHHHHHHHHHHHHHHHhhHHH
Confidence 4567778888889988888888888888899999999999999988888888888763
No 286
>PF03219 TLC: TLC ATP/ADP transporter; InterPro: IPR004667 These proteins are members of the ATP:ADP Antiporter (AAA) family, which consists of nucleotide transporters that have 12 GES predicted transmembrane regions. One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.; GO: 0005471 ATP:ADP antiporter activity, 0005524 ATP binding, 0006810 transport, 0016021 integral to membrane
Probab=70.20 E-value=64 Score=35.43 Aligned_cols=43 Identities=16% Similarity=0.069 Sum_probs=38.5
Q ss_pred HHHHHHHHhhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 007580 484 VGLLEFLYEEAPDAMKSIGSAYAALAGGLGCFAASILNSIIKS 526 (597)
Q Consensus 484 ~~~~~~~~~~~P~~~rg~~~gl~~~~~~lg~~lg~~l~~~v~~ 526 (597)
-..|.++.+..+.+...+.-++.....++|..+++.++..+..
T Consensus 163 lLFW~fAN~itt~~eAKRfYpl~g~ganigli~sG~~~~~~~~ 205 (491)
T PF03219_consen 163 LLFWGFANEITTVEEAKRFYPLFGLGANIGLIFSGQLTSYFSS 205 (491)
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3458999999999999999999999999999999999887665
No 287
>COG5336 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=63.40 E-value=23 Score=29.81 Aligned_cols=26 Identities=19% Similarity=-0.005 Sum_probs=19.2
Q ss_pred hhhHHHhhcccchHHHHHHHHHHHHH
Q 007580 123 VLGGFLADAYLGRYWTIAIFTTIYLA 148 (597)
Q Consensus 123 ~~~G~lsD~~~GR~~~~~~~~~l~~~ 148 (597)
...|||-|+|+|.++..+|..++...
T Consensus 60 a~iG~llD~~agTsPwglIv~lllGf 85 (116)
T COG5336 60 AGIGWLLDKFAGTSPWGLIVFLLLGF 85 (116)
T ss_pred HHHHHHHHHhcCCCcHHHHHHHHHHH
Confidence 45699999999998877666554433
No 288
>COG0477 ProP Permeases of the major facilitator superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / Inorganic ion transport and metabolism / General function prediction only]
Probab=60.94 E-value=1.6e+02 Score=28.26 Aligned_cols=62 Identities=23% Similarity=0.249 Sum_probs=48.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcch-hhHHHHHHHHHH-HHHHHHHHHHHHHHHhhh
Q 007580 465 AYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPD-AMKSIGSAYAAL-AGGLGCFAASILNSIIKS 526 (597)
Q Consensus 465 ~~~l~~~~~l~g~g~~~~~~~~~~~~~~~~P~-~~rg~~~gl~~~-~~~lg~~lg~~l~~~v~~ 526 (597)
...++...++.|++.+...+....++.+..|+ +.|+...+.... ...+|..+++.+.+.+..
T Consensus 94 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (338)
T COG0477 94 LALLLILRLLQGLGGGGLLPVASALLSEWFPEATERGLAVGLVTLGAGALGLALGPLLAGLLLG 157 (338)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455555557888888999999999999998 678898888888 577888888877666554
No 289
>COG3619 Predicted membrane protein [Function unknown]
Probab=56.87 E-value=2e+02 Score=28.04 Aligned_cols=68 Identities=10% Similarity=0.029 Sum_probs=33.9
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------hhCCChHHHHHHHHHHHHHHHHHhhhhHHHhhcccch
Q 007580 67 GWIAALFIFGNEMAERMAYFGLSVNMVTFMFY-------VMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGR 135 (597)
Q Consensus 67 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~-------~~~~s~~~a~~~~~~~~~~~~~~~~~~G~lsD~~~GR 135 (597)
.+-...+.+...+...++|.........+++. ++.-.+..-........+...++...+..++.+ ..|
T Consensus 10 l~l~~lLa~~aGfvDa~~f~~~gg~F~s~~TGN~v~~gi~l~~~~~~~a~~~~~pii~Fv~Gv~~~~~~~r~-~~~ 84 (226)
T COG3619 10 LRLGLLLALVAGFVDAFGFLHLGGVFVSFMTGNLVLLGIELAEGDAALAVLLLLPILAFVLGVAAAELISRR-ATR 84 (226)
T ss_pred HHHHHHHHHHhhhHHHHHHHHhcCchhhheeccHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHH-hcc
Confidence 34455566666677777764443333333322 222233333344444455566666666666665 454
No 290
>KOG1237 consensus H+/oligopeptide symporter [Amino acid transport and metabolism]
Probab=54.02 E-value=38 Score=37.98 Aligned_cols=69 Identities=19% Similarity=0.174 Sum_probs=59.0
Q ss_pred ccchhHHHHHHHHHHHHHhhhchhhhhhhhhhccCCCCCchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhcc
Q 007580 182 AKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEH 256 (597)
Q Consensus 182 ~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~R~~~~~~~~~~~~lg~~l~p~i~~~i~~~~ 256 (597)
+++-++.+++--.+++|++.........-+.-+++|++- |+.+.+++.....+|..++..+...+....
T Consensus 453 ~~~mSi~W~iPQyvLig~~Evf~~vg~lEFfY~qaP~sM------kS~~~al~l~t~a~G~~lss~Lv~~v~~~t 521 (571)
T KOG1237|consen 453 TNPMSILWQIPQYVLLGAGEVFTSVGGLEFFYSQAPESM------KSVATALWLLTVAVGNYLSSVLVSLVQFST 521 (571)
T ss_pred CCCeeHHHHHHHHHHHHHHHHHHhhhhHHHhHhhCCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 344677777778889999999999888999999999999 999999999999999999998887665544
No 291
>PF01733 Nucleoside_tran: Nucleoside transporter; InterPro: IPR002259 Delayed-early response (DER) gene products include growth progression factors and several unknown products of novel cDNAs. Murine and human cDNAs from one novel DER gene (DER12) have been characterised to identify its product and to examine its role in the growth response []. Both sequences encode a hydrophobic 36kDa protein that is predicted to contain 8 transmembrane (TM) domains. The protein has been localised to the nucleolus, where its concentration increases following mitogen stimulation []. Although the function of the protein is unknown, its identification as a nucleolar gene transcriptionally activated by growth factors implicates it as participating in the proliferative response []. Sequence analysis reveals the protein to share a high degree of similarity with the C-terminal portion of equilibrative nucleoside transporters. These proteins are integral membrane proteins which enable the movement of hydrophilic nucleosides and nucleoside analogs down their concentration gradients across cell membranes. ENT family members have been identified in humans, mice, fish, tunicates, slime molds, and bacteria []. ; GO: 0005337 nucleoside transmembrane transporter activity, 0006810 transport, 0016020 membrane; PDB: 1HXI_A.
Probab=51.29 E-value=5.6 Score=40.77 Aligned_cols=57 Identities=7% Similarity=0.153 Sum_probs=3.7
Q ss_pred hHHHHHHHHHHHHHhhhchhhhhhhhhhccCCCCCchhhhhhhhHHHHHHHHHHHHHHHHHHH
Q 007580 186 QMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTL 248 (597)
Q Consensus 186 ~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~R~~~~~~~~~~~~lg~~l~p~i 248 (597)
+-+.+++..++.|+..|-..+....+..+..++++ |..+-.+..+..++|-.+|..+
T Consensus 247 ~d~~~~i~~~l~g~TNGyl~tl~m~~~p~~v~~~e------~e~aG~~~~~~L~~Gl~~Gs~l 303 (309)
T PF01733_consen 247 SDAWFIILMLLFGFTNGYLSTLAMMYAPKSVSPEE------RELAGSVMSFFLSFGLFIGSVL 303 (309)
T ss_dssp --------------------HHHH---------------------------------------
T ss_pred chHHHHHHHHHHHHccchhhhceeeeCCCcCCHHH------HHHHHHHHHHHHHHHHHHHHHH
Confidence 44566777889999999999999999999998777 6666555555666666655443
No 292
>KOG2601 consensus Iron transporter [Inorganic ion transport and metabolism]
Probab=49.94 E-value=3.4e+02 Score=28.79 Aligned_cols=56 Identities=11% Similarity=0.113 Sum_probs=38.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHHHHHHHH
Q 007580 465 AYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPDAMKSIGSAYAALAGGLGCFAASIL 520 (597)
Q Consensus 465 ~~~l~~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~gl~~~~~~lg~~lg~~l 520 (597)
...++......-+|.-+.-+...-...+..|++.|..+.|+-|..+..-..+--++
T Consensus 386 v~ll~agVaaaR~GLW~fDlAVtqimQe~VpEseR~vv~gvqnsL~~~ldll~~il 441 (503)
T KOG2601|consen 386 VYLLFAGVAAARLGLWMFDLAVTQIMQETVPESERCVVFGVQNSLNSALDLLKDIL 441 (503)
T ss_pred HHHHHHHHHHHHhhHHhccHHHHHHHHHhcchhhhhhhHhHHHHHHHHHHHHHHhE
Confidence 33344444333344444446666677788999999999999999888776666555
No 293
>PF09527 ATPase_gene1: Putative F0F1-ATPase subunit (ATPase_gene1)
Probab=49.12 E-value=78 Score=23.00 Aligned_cols=34 Identities=9% Similarity=0.123 Sum_probs=21.9
Q ss_pred HHHHHHHHhhhhHHHhhcccchHHHHHHHHHHHH
Q 007580 114 FLGISQASSVLGGFLADAYLGRYWTIAIFTTIYL 147 (597)
Q Consensus 114 ~~~~~~~~~~~~G~lsD~~~GR~~~~~~~~~l~~ 147 (597)
......+.....|+..|+++|..+...+..++..
T Consensus 9 ~~~~~i~~g~~~G~~lD~~~~t~p~~~~~g~llG 42 (55)
T PF09527_consen 9 TMAAPILVGFFLGYWLDKWFGTSPWFTLIGLLLG 42 (55)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHH
Confidence 3444555666778888888998666555544333
No 294
>PF06912 DUF1275: Protein of unknown function (DUF1275); InterPro: IPR010699 This family consists of several hypothetical bacterial proteins of around 200 residues in length. The function of this family is unknown although a few members are thought to be membrane proteins.
Probab=48.06 E-value=2.5e+02 Score=26.64 Aligned_cols=35 Identities=17% Similarity=0.187 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHHHHHHHHhhhccchHHHHHHHHHHH
Q 007580 234 FYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAM 269 (597)
Q Consensus 234 ~~~~~~lg~~l~p~i~~~i~~~~gw~~~f~i~~~~~ 269 (597)
.+...-++-.+|..+++++.+..+. +.++++++..
T Consensus 167 ~~~~~i~~f~~Ga~~ga~l~~~~~~-~al~~~~~~l 201 (209)
T PF06912_consen 167 RYLLIILSFFIGAILGALLYRRLGF-WALLLPALLL 201 (209)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhh-HHHHHHHHHH
Confidence 3344445555566666777776664 4455444433
No 295
>PF07672 MFS_Mycoplasma: Mycoplasma MFS transporter; InterPro: IPR011699 These proteins share some similarity with members of the Major Facilitator Superfamily (MFS).
Probab=45.73 E-value=3.2e+02 Score=27.26 Aligned_cols=226 Identities=12% Similarity=0.029 Sum_probs=0.0
Q ss_pred CCCchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHh-----hhccchHHHHHHHHHHHHHHHHHHHHhcCcccccCCC-CC
Q 007580 218 ERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYI-----QMEHGWGSAFGALAIAMGISNMLFFIGTPLYRHRLPG-GS 291 (597)
Q Consensus 218 ~~~~~~~~~R~~~~~~~~~~~~lg~~l~p~i~~~i-----~~~~gw~~~f~i~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 291 (597)
.++ |+....+-.++.++|+.++.+.--.- .-...|++.+.+.+++.++-++++.+.-++....+++ +.
T Consensus 1 ~k~------K~~~s~~n~~gf~iG~ii~~ipF~~~~~~~~~~~~~W~~I~si~~lL~~IpLIly~ifGk~fd~~~~~~k~ 74 (267)
T PF07672_consen 1 QKK------KSILSQFNPWGFNIGTIIVNIPFLISSSVVIALTNNWQWILSIFILLIFIPLILYIIFGKNFDIYSPKEKQ 74 (267)
T ss_pred CCc------cceeeeeccccchhhHHHHHhhHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccCccccc
Q ss_pred chhhHHHHHHHHHHhhhcccCccccccccccCCCcccccCCcccccCCcchhhHHHhhhhhcccCCCCCCccccchhhhh
Q 007580 292 PLTRVAQVLVAAFRKRHAAFSSSELIGLYEVPGKHSAIKGSGKIAHTDDFRCLDKAALELKEDVINPSPWKLCTVTQVEE 371 (597)
Q Consensus 292 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~ 371 (597)
... +...+.+.+..+..+.+ +
T Consensus 75 ~k~---------------------------------------~~~~~~~~s~~~~LK~K--------------------~ 95 (267)
T PF07672_consen 75 EKE---------------------------------------NSTLSKKPSYKSILKEK--------------------E 95 (267)
T ss_pred ccc---------------------------------------cccccccchHHHHHccc--------------------h
Q ss_pred hhHhHhhhhhHHHHHHHHHHHhcchhhHHHHHhhhcccC---------------------------------CCCCCCCh
Q 007580 372 VKTLVRLVPIPACTIMLNVILTEFLTLSVQQAYTMNTHM---------------------------------GHPRGASQ 418 (597)
Q Consensus 372 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------------------------~~~~~~~~ 418 (597)
.-.+...-..|+...++..............+.+.+... ..+|++-.
T Consensus 96 tw~w~~~Yg~wLv~~V~p~t~~~~~~~~~~s~~ni~~~~~~~~~~~~~~~~~I~fv~g~~~G~~~ig~~nkt~~kRk~fi 175 (267)
T PF07672_consen 96 TWKWILIYGIWLVVVVFPFTPSWFNILIWISPANIKSVVSGGGFNWIIPIFQILFVAGYFLGPFTIGLWNKTNYKRKPFI 175 (267)
T ss_pred HHHHHHHHHHHheeEEEeccchhHhHhhhcCcccccccccccccchhhHHHHHHHHHHHhhhceeeccchhhhhhhhhHH
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhcCccccccCcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--cch
Q 007580 419 LQRVGIGLAVSILSVIWAGIFERYRRNYAISHGYEFSFLTAMPDLSAYWLLIQYCLIGIAEVFCIVGLLEFLYEE--APD 496 (597)
Q Consensus 419 ~~~i~~G~~l~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~s~~~l~~~~~l~g~g~~~~~~~~~~~~~~~--~P~ 496 (597)
...+..|+++..++.++.... +.... .+.....+.-++.|...-...+......-|. ..+
T Consensus 176 ~~~~~~gi~~~~l~~~~~~~~-----------------g~~~~-~~~~~f~I~~Fl~G~f~WgiQ~ViL~lPhEyK~~~p 237 (267)
T PF07672_consen 176 HFIISLGIVFFVLSIVVVYFV-----------------GPGNA-AGFAFFYIFGFLAGFFLWGIQGVILNLPHEYKGYNP 237 (267)
T ss_pred HHHHHHHHHHHHHHHHHHHHh-----------------CcchH-HHHHHHHHHHHHHHHHHHhhhHHHhcChhhhcCCCc
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 007580 497 AMKSIGSAYAALAGGLGCFAASILNSIIKS 526 (597)
Q Consensus 497 ~~rg~~~gl~~~~~~lg~~lg~~l~~~v~~ 526 (597)
+..|...|+..-.+.+...+.-.+...+.+
T Consensus 238 k~ig~~Fg~iWGfGY~~yTi~~Ii~S~i~~ 267 (267)
T PF07672_consen 238 KKIGIQFGLIWGFGYIFYTIYDIILSVIAD 267 (267)
T ss_pred ceehhHHHHHHHHHHHHHHHHHHHHHHhcC
No 296
>TIGR01666 YCCS hypothetical membrane protein, TIGR01666. This model represents a clade of sequences from gamma and beta proteobacteria. These proteins are 700 amino acids long and many have been annotated as putative membrane proteins. The gene from Salmonella has been annotated as a putative efflux transporter. The gene from E. coli has the name yccS.
Probab=43.53 E-value=3e+02 Score=31.84 Aligned_cols=32 Identities=16% Similarity=0.172 Sum_probs=22.7
Q ss_pred hHHHhh---cccchHHHHHHHHHHHHHHHHHHHHh
Q 007580 125 GGFLAD---AYLGRYWTIAIFTTIYLAGLTGITLC 156 (597)
Q Consensus 125 ~G~lsD---~~~GR~~~~~~~~~l~~~g~~~~~~~ 156 (597)
.+-++| ++-||.+-++++.+.++++.....+.
T Consensus 43 a~al~D~d~~~~~R~~~l~~t~~~f~i~sl~v~ll 77 (704)
T TIGR01666 43 AAALVDLDDRLTGRLKNVIFTLICFSIASFSVELL 77 (704)
T ss_pred hhccCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355555 45678888888888888877776654
No 297
>COG1230 CzcD Co/Zn/Cd efflux system component [Inorganic ion transport and metabolism]
Probab=42.47 E-value=3.8e+02 Score=27.22 Aligned_cols=83 Identities=13% Similarity=0.003 Sum_probs=39.7
Q ss_pred cCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHhhhhHHHhhc--ccchHHHHHH
Q 007580 64 KTGGWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADA--YLGRYWTIAI 141 (597)
Q Consensus 64 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~lsD~--~~GR~~~~~~ 141 (597)
+|+-|..+.+.+...+.|-.+ ++.++-..-+.+..|+.....++.++.... .++..-.++ -||.+|.=++
T Consensus 21 ~r~l~~~~~L~~~f~~iE~i~--g~~s~SlaLLADa~Hml~D~~al~lal~A~------~~a~r~~~~~~TfGy~R~eiL 92 (296)
T COG1230 21 ERRLLIALLLNLAFMLIEIIG--GLLTGSLALLADALHMLSDALALLLALIAI------KLARRPATKRFTFGYKRLEIL 92 (296)
T ss_pred HHHHHHHHHHHHHHHHHHHHH--HHHhccHHHHHhHHHHHHHHHHHHHHHHHH------HHhcCCCCCCCCccHhHHHHH
Confidence 344444444444444444443 444444555677777765555554443211 122222222 2677776666
Q ss_pred HHHHHHHHHHHHH
Q 007580 142 FTTIYLAGLTGIT 154 (597)
Q Consensus 142 ~~~l~~~g~~~~~ 154 (597)
+.++..+.++..+
T Consensus 93 aa~~nav~Li~~s 105 (296)
T COG1230 93 AAFLNALLLIVVS 105 (296)
T ss_pred HHHHHHHHHHHHH
Confidence 6555544444433
No 298
>PRK10263 DNA translocase FtsK; Provisional
Probab=41.82 E-value=2.9e+02 Score=34.07 Aligned_cols=12 Identities=33% Similarity=0.592 Sum_probs=7.8
Q ss_pred HHhhhhHHHhhc
Q 007580 120 ASSVLGGFLADA 131 (597)
Q Consensus 120 ~~~~~~G~lsD~ 131 (597)
.+..+|.|++|.
T Consensus 63 l~GiVGA~LAD~ 74 (1355)
T PRK10263 63 LGGMPGAWLADT 74 (1355)
T ss_pred ccchHHHHHHHH
Confidence 344677777775
No 299
>PF06123 CreD: Inner membrane protein CreD; InterPro: IPR010364 This family consists of several bacterial CreD or Cet inner membrane proteins. Dominant mutations of the cet gene of Escherichia coli result in tolerance to colicin E2 and increased amounts of an inner membrane protein with a Mr of 42,000. The cet gene is shown to be in the same operon as the phoM gene, which is required in a phoR background for expression of the structural gene for alkaline phosphatase, phoA. Although the Cet protein is not required for phoA expression, it has been suggested that the Cet protein has an enhancing effect on the transcription of phoA [].
Probab=41.56 E-value=4.5e+02 Score=28.29 Aligned_cols=19 Identities=21% Similarity=0.174 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 007580 424 IGLAVSILSVIWAGIFERY 442 (597)
Q Consensus 424 ~G~~l~~~~~~~~~~~~~~ 442 (597)
=|+++.++.++.+.++|..
T Consensus 300 YgiLFI~LTF~~fflfE~~ 318 (430)
T PF06123_consen 300 YGILFIGLTFLAFFLFELL 318 (430)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4666777777777777765
No 300
>PF11947 DUF3464: Protein of unknown function (DUF3464); InterPro: IPR021855 This family of proteins are functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 137 to 196 amino acids in length.
Probab=41.46 E-value=78 Score=28.69 Aligned_cols=50 Identities=14% Similarity=0.169 Sum_probs=32.9
Q ss_pred hHHHHHHHHHHHHHhhhchhhhhhhhhhccCCCCCchhhhhhhhHHHHHHHHHHHHHHH
Q 007580 186 QMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIV 244 (597)
Q Consensus 186 ~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~R~~~~~~~~~~~~lg~~l 244 (597)
....+++...+.|+|.-+ ..+++++--.++++ -|++.|+-.+-.|++-+.
T Consensus 96 ~~~~~~~S~~~Fg~gllG---isYGilSaSWD~~r------~GSllG~~e~~~N~~r~~ 145 (153)
T PF11947_consen 96 PWAVLLVSLVFFGLGLLG---ISYGILSASWDPER------EGSLLGWEEFKRNWGRMW 145 (153)
T ss_pred chHHHHHHHHHHHHHHHh---hhhhhcccccCCCC------CCCcccHHHHHHhHHHHH
Confidence 344555555555554433 45666777778887 689999988888876653
No 301
>PRK11715 inner membrane protein; Provisional
Probab=41.14 E-value=4.4e+02 Score=28.47 Aligned_cols=19 Identities=16% Similarity=0.069 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 007580 424 IGLAVSILSVIWAGIFERY 442 (597)
Q Consensus 424 ~G~~l~~~~~~~~~~~~~~ 442 (597)
-|+++.++.++.+.+.|..
T Consensus 306 YgiLFI~LTF~~fFlfE~~ 324 (436)
T PRK11715 306 YAILFIALTFAAFFLFELL 324 (436)
T ss_pred HHHHHHHHHHHHHHHHHHh
Confidence 4667777777777777765
No 302
>KOG1479 consensus Nucleoside transporter [Nucleotide transport and metabolism]
Probab=40.28 E-value=75 Score=33.79 Aligned_cols=111 Identities=13% Similarity=0.090 Sum_probs=66.8
Q ss_pred HHHHHHH-HHHHHHHHhhhhHHHhhcccchHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCcccccccccCCCCCccch
Q 007580 107 SSNAVNN-FLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSW 185 (597)
Q Consensus 107 a~~~~~~-~~~~~~~~~~~~G~lsD~~~GR~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~ 185 (597)
+-..+.. |.+.-.+|.+...|+-+. +||+ +.+..++-.+...+..++...+ .| ..=.
T Consensus 284 ~~~~~~l~fN~~d~vG~~~a~~~~~~--~~r~-l~i~v~lR~lfiPlF~~cn~~~--~~-----------------v~~~ 341 (406)
T KOG1479|consen 284 ALLLVFLSFNVFDLIGSILAALLTWP--DPRK-LTIPVLLRLLFIPLFLLCNYPP--LP-----------------VVFE 341 (406)
T ss_pred HHHHHHHHhHHHHHhhhhhhhcccCC--CCce-ehHHHHHHHHHHHHHHHhccCC--CC-----------------ceec
Confidence 3344455 778888887777777664 5554 3444455555555555442211 01 0012
Q ss_pred hHHHHHHHHHHHHHhhhchhhhhhhhhhccCCCCCchhhhhhhhHHHHHHHHHHHHHHHH
Q 007580 186 QMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVA 245 (597)
Q Consensus 186 ~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~R~~~~~~~~~~~~lg~~l~ 245 (597)
+.+.+++...+.|+..|=...+...+.....|+++ +..+-++..+....|-..|
T Consensus 342 ~~~~~~~l~~~lglsnGYltsl~m~~aPk~v~~~e------~e~aG~~m~~fl~~Gl~~G 395 (406)
T KOG1479|consen 342 SDGWFIFLMSLLGLSNGYLTSLIMMYAPKQVKPSE------KEAAGNLMVFFLVGGLALG 395 (406)
T ss_pred CchHHHHHHHHHHhccchHhhheehhcCCCCChHH------HHHHHHHHHHHHHHHHHHh
Confidence 44677778889999999998999999999988887 4444334434444444433
No 303
>KOG4112 consensus Signal peptidase subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=39.59 E-value=67 Score=26.23 Aligned_cols=51 Identities=24% Similarity=0.330 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHhcCcccc
Q 007580 232 NFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGTPLYRH 285 (597)
Q Consensus 232 ~~~~~~~~lg~~l~p~i~~~i~~~~gw~~~f~i~~~~~~~~~~~~~~~~~~~~~ 285 (597)
-++.....+|+++|. +-|+.++..+|. .++.++..++.+++.+--.+.|++
T Consensus 26 r~~q~ilti~aiVg~-i~Gf~~Qqls~t--vy~vg~~~v~t~li~LPpwP~y~r 76 (101)
T KOG4112|consen 26 RFQQLILTIGAIVGF-IYGFAQQQLSVT--VYIVGAGFVFTLLITLPPWPWYRR 76 (101)
T ss_pred HHHHHHHHHHHHHHH-HHHHHHHHHHHH--HHHHHHHHHHHHHhcCCCchhhhc
Confidence 356666778888876 445666667765 333444444444444333333433
No 304
>TIGR01667 YCCS_YHJK integral membrane protein, YccS/YhfK family. TMHMM on members of this model shows a consensus of 11 transmembrane helices separated into two clusters, an N-terminal cluster of 6 and a central cluster of 5. This would indicate two non-membrane domains one on each side of the membrane
Probab=38.31 E-value=2.6e+02 Score=32.35 Aligned_cols=32 Identities=19% Similarity=0.138 Sum_probs=23.5
Q ss_pred hHHHhh---cccchHHHHHHHHHHHHHHHHHHHHh
Q 007580 125 GGFLAD---AYLGRYWTIAIFTTIYLAGLTGITLC 156 (597)
Q Consensus 125 ~G~lsD---~~~GR~~~~~~~~~l~~~g~~~~~~~ 156 (597)
++-++| ++-||.+-++++.+.++++.....+.
T Consensus 43 a~~l~D~~~~~~~R~~~l~it~~~f~i~sl~v~ll 77 (701)
T TIGR01667 43 AAGLDDLDDRLTGRLKNLIITLSCFSIASFLVQLL 77 (701)
T ss_pred hhccCCCCccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444 45678899999998888888777765
No 305
>PRK03612 spermidine synthase; Provisional
Probab=38.08 E-value=6e+02 Score=28.16 Aligned_cols=50 Identities=20% Similarity=0.137 Sum_probs=31.1
Q ss_pred HHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 007580 475 IGIAEVFCIVGLLEFLYEEAPDAMKSIGSAYAALAGGLGCFAASILNSIIK 525 (597)
Q Consensus 475 ~g~g~~~~~~~~~~~~~~~~P~~~rg~~~gl~~~~~~lg~~lg~~l~~~v~ 525 (597)
.++-.+...|....+..+.. .+.-|...|-....+.+|+.+|+++.+++.
T Consensus 120 ~~~l~G~~~Pl~~~~~~~~~-~~~~g~~~g~ly~~ntlGa~~G~l~~~~vL 169 (521)
T PRK03612 120 IGLLIGMEIPLLMRILQRIR-DQHLGHNVATVLAADYLGALVGGLAFPFLL 169 (521)
T ss_pred HHHHHHHHHHHHHHHHHhcc-ccchhhhhhhhHhHHhHHHHHHHHHHHHHH
Confidence 34444455666555544322 212355667777888899999999988754
No 306
>PF12273 RCR: Chitin synthesis regulation, resistance to Congo red; InterPro: IPR020999 RCR proteins are ER membrane proteins that regulate chitin deposition in fungal cell walls. Although chitin, a linear polymer of beta-1,4-linked N-acetylglucosamine, constitutes only 2% of the cell wall it plays a vital role in the overall protection of the cell wall against stress, noxious chemicals and osmotic pressure changes. Congo red is a cell wall-disrupting benzidine-type dye extensively used in many cell wall mutant studies that specifically targets chitin in yeast cells and inhibits growth. RCR proteins render the yeasts resistant to Congo red by diminishing the content of chitin in the cell wall []. RCR proteins are probably regulating chitin synthase III interact directly with ubiquitin ligase Rsp5, and the VPEY motif is necessary for this, via interaction with the WW domains of Rsp5 [].
Probab=34.79 E-value=18 Score=31.77 Aligned_cols=17 Identities=12% Similarity=-0.031 Sum_probs=8.3
Q ss_pred HHHHHHHHHHHHHHHHH
Q 007580 259 GSAFGALAIAMGISNML 275 (597)
Q Consensus 259 ~~~f~i~~~~~~~~~~~ 275 (597)
||++++..+++++.+++
T Consensus 1 RW~l~~iii~~i~l~~~ 17 (130)
T PF12273_consen 1 RWVLFAIIIVAILLFLF 17 (130)
T ss_pred CeeeHHHHHHHHHHHHH
Confidence 56666555444433333
No 307
>PF07857 DUF1632: CEO family (DUF1632); InterPro: IPR012435 These sequences are found in hypothetical eukaryotic proteins of unknown function. The region concerned is approximately 280 residues long.
Probab=30.36 E-value=1.1e+02 Score=30.23 Aligned_cols=27 Identities=19% Similarity=0.131 Sum_probs=14.5
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 007580 496 DAMKSIGSAYAALAGGLGCFAASILNS 522 (597)
Q Consensus 496 ~~~rg~~~gl~~~~~~lg~~lg~~l~~ 522 (597)
.-+|..++|+..+..+..+.+.....+
T Consensus 74 pii~~iGLglg~liW~s~n~l~Gw~~g 100 (254)
T PF07857_consen 74 PIIKTIGLGLGMLIWGSVNCLTGWASG 100 (254)
T ss_pred hHhhhhhhHHHHHHHHHHHHHHHHHHh
Confidence 445556666666555555555444433
No 308
>COG5336 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=29.47 E-value=3.5e+02 Score=22.94 Aligned_cols=34 Identities=6% Similarity=-0.012 Sum_probs=26.9
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Q 007580 495 PDAMKSIGSAYAALAGGLGCFAASILNSIIKSVT 528 (597)
Q Consensus 495 P~~~rg~~~gl~~~~~~lg~~lg~~l~~~v~~~~ 528 (597)
..+.++.++++-.++=.+++.+..+++|++..+.
T Consensus 36 a~s~k~~~~a~klssefIsGilVGa~iG~llD~~ 69 (116)
T COG5336 36 AESIKGYAQAFKLSSEFISGILVGAGIGWLLDKF 69 (116)
T ss_pred chhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3567888888888888888888888888876644
No 309
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=28.59 E-value=68 Score=27.92 Aligned_cols=27 Identities=15% Similarity=0.122 Sum_probs=10.9
Q ss_pred HHHHHHHHHHHHHHHHHHhhhccccccc
Q 007580 551 LYWLLAVLSVINFCAFLYSAYRYKYRSE 578 (597)
Q Consensus 551 ~f~~~a~l~~l~~~~~~~~~~~~~~~~~ 578 (597)
.|.++|++.++.++++++ .+|.++|..
T Consensus 70 i~gv~aGvIg~Illi~y~-irR~~Kk~~ 96 (122)
T PF01102_consen 70 IFGVMAGVIGIILLISYC-IRRLRKKSS 96 (122)
T ss_dssp HHHHHHHHHHHHHHHHHH-HHHHS----
T ss_pred hHHHHHHHHHHHHHHHHH-HHHHhccCC
Confidence 455555554444444343 444444443
No 310
>TIGR02230 ATPase_gene1 F0F1-ATPase subunit, putative. This model represents a protein found encoded in F1F0-ATPase operons in several genomes, including Methanosarcina barkeri (archaeal) and Chlorobium tepidum (bacterial). It is a small protein (about 100 amino acids) with long hydrophic stretches and is presumed to be a subunit of the enzyme.
Probab=28.05 E-value=1.8e+02 Score=24.29 Aligned_cols=18 Identities=17% Similarity=0.104 Sum_probs=9.9
Q ss_pred hhhHHHhhcccchHHHHH
Q 007580 123 VLGGFLADAYLGRYWTIA 140 (597)
Q Consensus 123 ~~~G~lsD~~~GR~~~~~ 140 (597)
.+.|...|+.||-.+.+.
T Consensus 60 ~~lG~WLD~~~~t~~~~t 77 (100)
T TIGR02230 60 VAVGIWLDRHYPSPFSWT 77 (100)
T ss_pred HHHHHHHHhhcCCCcHHH
Confidence 445555666677655333
No 311
>TIGR02230 ATPase_gene1 F0F1-ATPase subunit, putative. This model represents a protein found encoded in F1F0-ATPase operons in several genomes, including Methanosarcina barkeri (archaeal) and Chlorobium tepidum (bacterial). It is a small protein (about 100 amino acids) with long hydrophic stretches and is presumed to be a subunit of the enzyme.
Probab=27.99 E-value=3.5e+02 Score=22.66 Aligned_cols=38 Identities=8% Similarity=0.292 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhccc----hHHHHHHHHHHH
Q 007580 232 NFFYLSVTVGAIVAFTLVVYIQMEHG----WGSAFGALAIAM 269 (597)
Q Consensus 232 ~~~~~~~~lg~~l~p~i~~~i~~~~g----w~~~f~i~~~~~ 269 (597)
+...+...+..++|..++-|+-..++ |..+|.+.+++.
T Consensus 46 g~IG~~~v~pil~G~~lG~WLD~~~~t~~~~tl~~lllGv~~ 87 (100)
T TIGR02230 46 GLIGWSVAIPTLLGVAVGIWLDRHYPSPFSWTLTMLIVGVVI 87 (100)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHH
Confidence 33444555555666666667766654 444444444433
No 312
>KOG3574 consensus Acetyl-CoA transporter [Inorganic ion transport and metabolism]
Probab=27.87 E-value=4.8e+02 Score=27.89 Aligned_cols=59 Identities=8% Similarity=-0.007 Sum_probs=47.2
Q ss_pred HHHHhhhchhhhhhhhhhccCCCCCchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhccchHH
Q 007580 196 ITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGS 260 (597)
Q Consensus 196 l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~R~~~~~~~~~~~~lg~~l~p~i~~~i~~~~gw~~ 260 (597)
+-+...-.......++.+...|+.. -++.|++.+...|+|+-.-.++..++.|..+|.-
T Consensus 378 ~~~~~~ts~fv~~maf~aqisdp~i------ggTymTlLNTLsnLGg~wp~tv~l~l~D~ltv~~ 436 (510)
T KOG3574|consen 378 FHQVFVTSMFVSGMAFHAQISDPAI------GGTYMTLLNTLSNLGGNWPGTVALWLADGLTVKQ 436 (510)
T ss_pred HhhhHHHHHHHHHHHHHhhcCCccc------CccHHHHHHHHHHhcCCcHHHHHHHhcccCceee
Confidence 3444445556677888999999998 8999999999999999888888888888776664
No 313
>PRK11469 hypothetical protein; Provisional
Probab=26.60 E-value=5.4e+02 Score=24.15 Aligned_cols=78 Identities=15% Similarity=0.164 Sum_probs=46.9
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHH-HHHHhhhhHHHhhcccchHHHHHHHHHH
Q 007580 67 GWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGI-SQASSVLGGFLADAYLGRYWTIAIFTTI 145 (597)
Q Consensus 67 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~-~~~~~~~~G~lsD~~~GR~~~~~~~~~l 145 (597)
.++..+.+.+..-+.+++ -|+... -.+.+.-.....+...... ...+..+|.++.++ +|||.-++-+.++
T Consensus 104 ~~~~~l~LaiAtSiDAla-vGi~~~-------~~g~~~~~~~~~ig~~s~~~~~~G~~lG~~~g~~-~g~~a~~lgG~iL 174 (188)
T PRK11469 104 GFWLLVTTAIATSLDAMA-VGVGLA-------FLQVNIIATALAIGCATLIMSTLGMMVGRFIGSI-IGKKAEILGGLVL 174 (188)
T ss_pred CHHHHHHHHHHHHHHHHH-HHHHHH-------HhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHH
Confidence 455677777777777766 333221 2344454445555544443 33444456666776 8999888888888
Q ss_pred HHHHHHHH
Q 007580 146 YLAGLTGI 153 (597)
Q Consensus 146 ~~~g~~~~ 153 (597)
..+|.-++
T Consensus 175 I~iGi~il 182 (188)
T PRK11469 175 IGIGVQIL 182 (188)
T ss_pred HHHHHHHH
Confidence 77776654
No 314
>PF12805 FUSC-like: FUSC-like inner membrane protein yccS
Probab=25.34 E-value=5.1e+02 Score=25.94 Aligned_cols=17 Identities=24% Similarity=0.022 Sum_probs=9.0
Q ss_pred HHHHHHHHHHHHHhhhc
Q 007580 187 MLYLYTVLYITGFGAAG 203 (597)
Q Consensus 187 ~~~l~~~~~l~g~g~g~ 203 (597)
.+.+.+..++.+++.+.
T Consensus 23 ~~l~~~~~~~~~F~~~m 39 (284)
T PF12805_consen 23 PWLLILVLALLTFFFGM 39 (284)
T ss_pred cHHHHHHHHHHHHHHHH
Confidence 34555555555555554
No 315
>KOG4830 consensus Predicted sugar transporter [Carbohydrate transport and metabolism]
Probab=25.21 E-value=1.4e+02 Score=29.76 Aligned_cols=60 Identities=13% Similarity=0.083 Sum_probs=43.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHhhhhHHH---------hhcccchHHH
Q 007580 77 NEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFL---------ADAYLGRYWT 138 (597)
Q Consensus 77 ~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~l---------sD~~~GR~~~ 138 (597)
..+.+-+......+++..|+++ .+.++...+.+...-...-++..++.|.. -|| +|||+.
T Consensus 25 GHmlNDitAScWFTYlllfltq-iglsp~~~AmlML~GQVtda~st~ftGi~~d~nll~~~idr-~G~~~~ 93 (412)
T KOG4830|consen 25 GHMLNDITASCWFTYLLLFLTQ-IGLSPSSRAMLMLIGQVTDAISTPFTGIFSDSNLLPACIDR-IGRRMS 93 (412)
T ss_pred hHHHhhHHHHHHHHHHHHHHHH-hcCCcchhHHHHHhhHHHHHHhcccccccccccccHHHhhh-hcceee
Confidence 4455555556667788889876 46777777777777888888888888744 567 899875
No 316
>PF06645 SPC12: Microsomal signal peptidase 12 kDa subunit (SPC12); InterPro: IPR009542 This family consists of several microsomal signal peptidase 12 kDa subunit proteins. Translocation of polypeptide chains across the endoplasmic reticulum (ER) membrane is triggered by signal sequences. Subsequently, signal recognition particle interacts with its membrane receptor and the ribosome-bound nascent chain is targeted to the ER where it is transferred into a protein-conducting channel. At some point, a second signal sequence recognition event takes place in the membrane and translocation of the nascent chain through the membrane occurs. The signal sequence of most secretory and membrane proteins is cleaved off at this stage. Cleavage occurs by the signal peptidase complex (SPC) as soon as the lumenal domain of the translocating polypeptide is large enough to expose its cleavage site to the enzyme. The signal peptidase complex is possibly also involved in proteolytic events in the ER membrane other than the processing of the signal sequence, for example the further digestion of the cleaved signal peptide or the degradation of membrane proteins. Mammalian signal peptidase is as a complex of five different polypeptide chains. This family represents the 12 kDa subunit (SPC12).; GO: 0008233 peptidase activity, 0006465 signal peptide processing, 0005787 signal peptidase complex, 0016021 integral to membrane
Probab=24.94 E-value=3.2e+02 Score=21.52 Aligned_cols=48 Identities=17% Similarity=0.323 Sum_probs=26.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHhcCcc
Q 007580 233 FFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGTPLY 283 (597)
Q Consensus 233 ~~~~~~~lg~~l~p~i~~~i~~~~gw~~~f~i~~~~~~~~~~~~~~~~~~~ 283 (597)
++.....++++++ .+.||+.+. .+..+++.++..++++++.+--.+.+
T Consensus 12 l~~~il~~~~iis-fi~Gy~~q~--~~~~~~~~~~g~~~~~lv~vP~Wp~y 59 (76)
T PF06645_consen 12 LMQYILIISAIIS-FIVGYITQS--FSYTFYIYGAGVVLTLLVVVPPWPFY 59 (76)
T ss_pred HHHHHHHHHHHHH-HHHHHHHHH--HHHHHHHHHHHHHHHHhheeCCcHhh
Confidence 4445555666665 466777664 45566666665555555544333333
No 317
>PF12805 FUSC-like: FUSC-like inner membrane protein yccS
Probab=23.56 E-value=7.5e+02 Score=24.72 Aligned_cols=18 Identities=6% Similarity=0.001 Sum_probs=7.2
Q ss_pred HHHHH-HHHHHHHHHHHHh
Q 007580 552 YWLLA-VLSVINFCAFLYS 569 (597)
Q Consensus 552 f~~~a-~l~~l~~~~~~~~ 569 (597)
+++.| ++..+..++++.+
T Consensus 77 l~~~Gglwy~~lsl~~~~l 95 (284)
T PF12805_consen 77 LFLAGGLWYLLLSLLWWPL 95 (284)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 33444 4444333433333
No 318
>PF02554 CstA: Carbon starvation protein CstA; InterPro: IPR003706 Escherichia coli induces the synthesis of at least 30 proteins at the onset of carbon starvation, two-thirds of which are positively regulated by the cyclic AMP (cAMP) and cAMP receptor protein (CRP) complex. This family consists of carbon starvation protein CstA a predicted membrane protein. It has been suggested that CstA is involved in peptide utilization [].; GO: 0009267 cellular response to starvation, 0016020 membrane
Probab=21.96 E-value=9.5e+02 Score=25.31 Aligned_cols=31 Identities=29% Similarity=0.373 Sum_probs=19.4
Q ss_pred hhhHHHH-HHHHHHHHHHHHHHHHHHhhhccchHHH
Q 007580 227 LDRFFNF-FYLSVTVGAIVAFTLVVYIQMEHGWGSA 261 (597)
Q Consensus 227 R~~~~~~-~~~~~~lg~~l~p~i~~~i~~~~gw~~~ 261 (597)
|...++. +......|+.+||+++ ..+||--+
T Consensus 54 ~~vlfghhf~sIAGaGPI~GPi~a----a~~GwlPa 85 (376)
T PF02554_consen 54 KWVLFGHHFASIAGAGPIVGPILA----AQFGWLPA 85 (376)
T ss_pred hHHhhHHHHHHHhccccchHHHHH----HHhcchHH
Confidence 6777777 4444466666666665 35788743
No 319
>PF12670 DUF3792: Protein of unknown function (DUF3792); InterPro: IPR023804 Members of this family of strongly hydrophobic putative transmembrane protein average about 125 amino acids in length and occur mostly, but not exclusively, in the Firmicutes. Members are quite diverse in sequence. Their function is unknown.
Probab=21.18 E-value=5.2e+02 Score=22.02 Aligned_cols=45 Identities=9% Similarity=0.046 Sum_probs=31.0
Q ss_pred HHHHHHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHHH
Q 007580 234 FYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFI 278 (597)
Q Consensus 234 ~~~~~~lg~~l~p~i~~~i~~~~gw~~~f~i~~~~~~~~~~~~~~ 278 (597)
......++..+|..+.+.-.+.-||-|+.....+..++..++-+.
T Consensus 43 ~~~i~~ls~~~GG~~a~~~~~~kG~l~G~~~Gl~y~~il~lis~~ 87 (116)
T PF12670_consen 43 VVIIYILSVFIGGFYAGRKAGSKGWLHGLLVGLLYFLILLLISFL 87 (116)
T ss_pred HHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHHHHH
Confidence 344556677777777788788889999988776665555554444
Done!