Query 007580
Match_columns 597
No_of_seqs 321 out of 2267
Neff 8.7
Searched_HMMs 29240
Date Mon Mar 25 05:19:28 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007580.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/007580hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4aps_A DI-OR tripeptide H+ sym 100.0 2.9E-29 9.8E-34 272.7 35.4 431 65-576 9-478 (491)
2 2xut_A Proton/peptide symporte 100.0 7.1E-31 2.4E-35 288.0 22.8 451 67-579 10-512 (524)
3 4gc0_A D-xylose-proton symport 100.0 2.2E-28 7.5E-33 265.6 16.2 162 92-270 34-211 (491)
4 1pw4_A Glycerol-3-phosphate tr 99.9 9.5E-26 3.3E-30 241.6 24.2 181 65-282 24-209 (451)
5 3o7q_A L-fucose-proton symport 99.9 1.7E-23 6E-28 223.2 36.0 180 65-277 22-227 (438)
6 2gfp_A EMRD, multidrug resista 99.9 1.9E-22 6.5E-27 211.0 18.6 167 72-274 3-169 (375)
7 2cfq_A Lactose permease; trans 99.8 3.5E-21 1.2E-25 205.1 11.4 169 70-269 8-177 (417)
8 1pw4_A Glycerol-3-phosphate tr 99.5 2.4E-13 8.1E-18 144.9 17.6 178 68-278 251-432 (451)
9 3o7q_A L-fucose-proton symport 99.4 1.2E-11 4.1E-16 131.2 19.8 165 70-272 259-425 (438)
10 2cfq_A Lactose permease; trans 99.3 1.1E-11 3.8E-16 131.4 16.6 176 71-281 222-401 (417)
11 4aps_A DI-OR tripeptide H+ sym 99.2 8E-11 2.7E-15 127.1 11.4 187 70-283 284-475 (491)
12 4gc0_A D-xylose-proton symport 99.1 1.3E-08 4.4E-13 109.6 22.9 188 68-286 276-469 (491)
13 2gfp_A EMRD, multidrug resista 98.9 8.7E-10 3E-14 114.5 5.1 164 69-266 199-363 (375)
14 2xut_A Proton/peptide symporte 98.3 7.9E-07 2.7E-11 96.5 6.6 149 107-281 337-504 (524)
No 1
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}
Probab=99.97 E-value=2.9e-29 Score=272.75 Aligned_cols=431 Identities=18% Similarity=0.227 Sum_probs=276.4
Q ss_pred CCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-----hCCChHHHHHHHHHHHHHHHHHhhhhHHHhhcccchHHHH
Q 007580 65 TGGWIAALFIFGNEMAERMAYFGLSVNMVTFMFYV-----MHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTI 139 (597)
Q Consensus 65 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~-----~~~s~~~a~~~~~~~~~~~~~~~~~~G~lsD~~~GR~~~~ 139 (597)
+++++.++.+++..++..+++|++.++++.|++++ +|++..+.+++.+.+.++..++.+++|+++||++|||+++
T Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~g~r~~~ 88 (491)
T 4aps_A 9 FGQPLGLSTLFMTEMWERFSYYGMRAILLYYMWFLISTGDLHITRATAASIMAIYASMVYLSGTIGGFVADRIIGARPAV 88 (491)
T ss_dssp --CTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCHHHHH
T ss_pred hccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchHHH
Confidence 44567788899999999999999999999999998 9999999999999999999999999999999845999999
Q ss_pred HHHHHHHHHHHHHHHHhhhccccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhhchhhhhhhhhhccCCCC
Q 007580 140 AIFTTIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDER 219 (597)
Q Consensus 140 ~~~~~l~~~g~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~~~~~ 219 (597)
.++.++..++.++++++ ++...++++|+++|+|.+...++..++++|++|++
T Consensus 89 ~~~~~~~~~~~~~~~~~----------------------------~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~ 140 (491)
T 4aps_A 89 FWGGVLIMLGHIVLALP----------------------------FGASALFGSIILIIIGTGFLKPNVSTLVGTLYDEH 140 (491)
T ss_dssp HHHHHHHHHHHHHHHSC----------------------------CSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSC
T ss_pred HHHHHHHHHHHHHHHHh----------------------------hhHHHHHHHHHHHHHHHHhccchHHHHHHHHcCcc
Confidence 99999999999988876 45678999999999999999999999999999987
Q ss_pred CchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHhcCcccccC--CCCCc--hhh
Q 007580 220 SKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGTPLYRHRL--PGGSP--LTR 295 (597)
Q Consensus 220 ~~~~~~~R~~~~~~~~~~~~lg~~l~p~i~~~i~~~~gw~~~f~i~~~~~~~~~~~~~~~~~~~~~~~--~~~~~--~~~ 295 (597)
+.+ |+.++++++...++|..++|.+++++.+..|||+.|++.++..+++.++++...++..+++ +..++ ..+
T Consensus 141 ~~~----r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 216 (491)
T 4aps_A 141 DRR----RDAGFSIFVFGINLGAFIAPLIVGAAQEAAGYHVAFSLAAIGMFIGLLVYYFGGKKTLDPHYLRPTDPLAPEE 216 (491)
T ss_dssp TTH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHTTCCSCCSCCSCCCSHHH
T ss_pred ccc----ceeeehHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhCcccccccccCCCCccccch
Confidence 733 7778888999999999999999999999999999999988777666665554433332211 11111 111
Q ss_pred HHHHHHHHHHhhhccc--CccccccccccCCCcccccCCcccccCCcchhhHHHhhhhhcccCCCCCCccccchhhhhhh
Q 007580 296 VAQVLVAAFRKRHAAF--SSSELIGLYEVPGKHSAIKGSGKIAHTDDFRCLDKAALELKEDVINPSPWKLCTVTQVEEVK 373 (597)
Q Consensus 296 ~~~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 373 (597)
..+. .+...... .......+...+.. ..++................. ...|+... ....+++
T Consensus 217 ~~~~----~~~~g~~l~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~-~~~~~~~ 280 (491)
T 4aps_A 217 VKPL----LVKVSLAVAGFIAIIVVMNLVGWN----------SLPAYINLLTIVAIAIPVFYF-AWMISSVK-VTSTEHL 280 (491)
T ss_dssp HHHH----HHHCCCCCHHHHHHHHHHHHHSSC----------CTTHHHHHHHHHHHHHHHHHH-HHHC------------
T ss_pred hHHH----HHHHHHHHHHHHHHHHHHHhccCc----------ccccchhhhhHHHHHHHHHHH-HHHhhccc-ccHHHHH
Confidence 1110 00000000 00000000000000 000000000000000000000 00000000 0012233
Q ss_pred HhHhhhhhHHHHHHHHHHHhcchhhHHHHHhh-hcccC--------------------------CCCC-CCChhHHHHHH
Q 007580 374 TLVRLVPIPACTIMLNVILTEFLTLSVQQAYT-MNTHM--------------------------GHPR-GASQLQRVGIG 425 (597)
Q Consensus 374 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~--------------------------~~~~-~~~~~~~i~~G 425 (597)
+.....++++...+++..+.+..+.+..+... .+... +.++ +.....++.+|
T Consensus 281 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~r~~~~~~~~~~~ 360 (491)
T 4aps_A 281 RVVSYIPLFIAAVLFWAIEEQGSVVLATFAAERVDSSWFPVSWFQSLNPLFIMLYTPFFAWLWTAWKKNQPSSPTKFAVG 360 (491)
T ss_dssp -CTTHHHHHHHHHHHHHHHGGGGTHHHHHHHHSCCCSSSCSGGGTTHHHHHHHHHHHHHHHHHHHTTTC---CHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHhccCccCHHHHhccchHHHHHHHHHHHHHHHHHhccCCCchHHHHHH
Confidence 33344555556666666666665544433221 12110 2222 22334555667
Q ss_pred HHHHHHHHHHHHHHHHHHhHHhhhcCccccccCcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhhHHHHHHH
Q 007580 426 LAVSILSVIWAGIFERYRRNYAISHGYEFSFLTAMPDLSAYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPDAMKSIGSAY 505 (597)
Q Consensus 426 ~~l~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~s~~~l~~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~gl 505 (597)
.++.++++.++....... + .... .+.+++++.+++.++++++..|..++++.+.+|++.||.++|+
T Consensus 361 ~~~~~~~~~~~~~~~~~~-------~------~~~~-~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~ 426 (491)
T 4aps_A 361 LMFAGLSFLLMAIPGALY-------G------TSGK-VSPLWLVGSWALVILGEMLISPVGLSVTTKLAPKAFNSQMMSM 426 (491)
T ss_dssp HHHHHHHHTTTHHHHHHC-------C------CCTT-CCTHHHHHHHHHHHHHHHTTTTHHHHHHHHHTTTTCSSSSTHH
T ss_pred HHHHHHHHHHHHHHHHhc-------C------CCCC-ccHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCCHHHHHHHHHH
Confidence 666666666555442110 0 0111 4667778888999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhhccCCCCCCCCCccccCCCCcchhHHHHHHHHHHHHHHHHHHHhhhccccc
Q 007580 506 AALAGGLGCFAASILNSIIKSVTGNPKKGQPNWLAQNINTGRFDYLYWLLAVLSVINFCAFLYSAYRYKYR 576 (597)
Q Consensus 506 ~~~~~~lg~~lg~~l~~~v~~~~g~~~~~~~~w~~~~l~~~~~~~~f~~~a~l~~l~~~~~~~~~~~~~~~ 576 (597)
.++...+|..+++.+.+.+.+.. +...|++.++++++..++++++.++.+++
T Consensus 427 ~~~~~~~g~~i~~~~~~~~~~~~-------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 478 (491)
T 4aps_A 427 WFLSSSVGSALNAQLVTLYNAKS-------------------EVAYFSYFGLGSVVLGIVLVFLSKRIQGL 478 (491)
T ss_dssp HHHHHHHHHHHHHHHGGGGGGSS-------------------TTHHHHHTHHHHHHHHHHHHHC-------
T ss_pred HHHHHHHHHHHHHHHHHHHhccc-------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999988765421 24678888888888888877776665544
No 2
>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}
Probab=99.97 E-value=7.1e-31 Score=287.99 Aligned_cols=451 Identities=22% Similarity=0.329 Sum_probs=274.7
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC------CChHHHHHHHHHHHHHHHHHhhhhHHHhhccc-chHHHH
Q 007580 67 GWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMH------KSFADSSNAVNNFLGISQASSVLGGFLADAYL-GRYWTI 139 (597)
Q Consensus 67 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~------~s~~~a~~~~~~~~~~~~~~~~~~G~lsD~~~-GR~~~~ 139 (597)
+++.++.+.+..++..+++|++.++++.|+++++| ++..+++++.+.+.++..++.+++|+++|| + |||+++
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr-~~g~r~~~ 88 (524)
T 2xut_A 10 WPRQIPYIIASEACERFSFYGMRNILTPFLMTALLLSIPEELRGAVAKDVFHSFVIGVYFFPLLGGWIADR-FFGKYNTI 88 (524)
T ss_dssp ---CCTHHHHHHHHHHHHHHHHHHHHHHHHHHSCSSCCSSSTTTTTHHHHHHHHHHHHHHTHHHHHHHHTT-SSCSHHHH
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhcchHHH
Confidence 34456667888899999999999999999999999 999999999999999999999999999999 8 999999
Q ss_pred HHHHHHHHHHHHHHHHhhhccccCCCCCcccccccccCCCCCccch-hHHHHHHHHHHHHHhhhchhhhhhhhhhccCCC
Q 007580 140 AIFTTIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSW-QMLYLYTVLYITGFGAAGIRPCVSSFGADQFDE 218 (597)
Q Consensus 140 ~~~~~l~~~g~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~-~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~~~~ 218 (597)
.++.++..++.++++++ . +...++++|++.|++.+...++..++++|++|+
T Consensus 89 ~~~~~~~~~~~~~~~~~----------------------------~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~ 140 (524)
T 2xut_A 89 LWLSLIYCVGHAFLAIF----------------------------EHSVQGFYTGLFLIALGSGGIKPLVSSFMGDQFDQ 140 (524)
T ss_dssp HHHHHHHHHHHHHHHHT----------------------------SSCHHHHHHHHHHHHHHHHTTHHHHHHHHHHTCST
T ss_pred HHHHHHHHHHHHHHHHh----------------------------cccHHHHHHHHHHHHHhccccchhHHHHHHHHcCc
Confidence 99999999999888876 3 577899999999999999999999999999999
Q ss_pred CCchhhhhhhh---HHHHHHHHHHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHhcCcccccCCCCCchhh
Q 007580 219 RSKDYKTHLDR---FFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGTPLYRHRLPGGSPLTR 295 (597)
Q Consensus 219 ~~~~~~~~R~~---~~~~~~~~~~lg~~l~p~i~~~i~~~~gw~~~f~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 295 (597)
++ |++ .+++++...++|..++|.+++++.+..||++.|++.++..+++.++++...++.+++++++++..+
T Consensus 141 ~~------r~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 214 (524)
T 2xut_A 141 SN------KSLAQKAFDMFYFTINFGSFFASLSMPLLLKNFGAAVAFGIPGVLMFVATVFFWLGRKRYIHMPPEPKDPHG 214 (524)
T ss_dssp TT------TTHHHHHHHHHHHHHHHHHHHHHHTSTHHHHTSCHHHHHHHHHHHHHHHHHHHHSSSSSCCCCC--------
T ss_pred cc------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHHhcccccccCCCCccchh
Confidence 88 754 455599999999999999999999989999999998887766666555444443333332222222
Q ss_pred HHHHHHHHHHhhhcccCccccccccccCCCcccccCCcccccCCcchhhHHHhhhh--hcccCCCCCC-------ccccc
Q 007580 296 VAQVLVAAFRKRHAAFSSSELIGLYEVPGKHSAIKGSGKIAHTDDFRCLDKAALEL--KEDVINPSPW-------KLCTV 366 (597)
Q Consensus 296 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~--~~~~~~~~~~-------~~~~~ 366 (597)
..+.+....|+++...+. ... +.+.......... ..+.+....+..+.... ..+....++| ..+..
T Consensus 215 ~~~~~~~~~~~~~~~~~~-~~~-~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 289 (524)
T 2xut_A 215 FLPVIRSALLTKVEGKGN-IGL-VLALIGGVSAAYA---LVNIPTLGIVAGLCCAMVLVMGFVGAGASLQLERARKSHPD 289 (524)
T ss_dssp ------------CTTHHH-HHH-HHHHHHHHHHHHT---GGGTTTTCSSHHHHHHHHHHHHHHHTGGGTHHHHSCCSCCS
T ss_pred HHHHHHHHHhhhhcccCc-cch-hhhhhhhhhhhhh---hcccchhhhhhhhhhhhhhhhcccccchhhHHhhhhccccH
Confidence 222222222222110000 000 0000000000000 00000000000000000 0000001122 01111
Q ss_pred hhhhhhhHhHhhhhhHHHHHHHHHHHhcchhhHHHHHhhhccc----C-------------------CC-----C---CC
Q 007580 367 TQVEEVKTLVRLVPIPACTIMLNVILTEFLTLSVQQAYTMNTH----M-------------------GH-----P---RG 415 (597)
Q Consensus 367 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~-------------------~~-----~---~~ 415 (597)
.+..+++.......++....+++..+.+..+.+..+...++.. . +. + ++
T Consensus 290 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 369 (524)
T 2xut_A 290 AAVDGVRSVLRILVLFALVTPFWSLFDQKASTWILQANDMVKPQWFEPAMMQALNPLLVMLLIPFNNFVLYPAIERMGVK 369 (524)
T ss_dssp SSSTTTTTHHHHHHHHTTSHHHHTTTSSTTTHHHHHHHHSCCCSSSCHHHHHTTSGGGHHHHGGGTTTC-----------
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhHHhHHhcCCCeeecHHHHHHHHHHHHHHhHHHHHhhhHHHHHhcCCC
Confidence 1223344444444555555555555555555555443333220 0 11 1 11
Q ss_pred CChhHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhcCccccccCcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 007580 416 ASQLQRVGIGLAVSILSVIWAGIFERYRRNYAISHGYEFSFLTAMPDLSAYWLLIQYCLIGIAEVFCIVGLLEFLYEEAP 495 (597)
Q Consensus 416 ~~~~~~i~~G~~l~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~s~~~l~~~~~l~g~g~~~~~~~~~~~~~~~~P 495 (597)
.+....+.+|+++.+++++++...+..+. .... .+.+++++.+++.++++++..|..++++.+.+|
T Consensus 370 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~-------------~~~~-~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p 435 (524)
T 2xut_A 370 LTALRKMGAGIAITGLSWIVVGTIQLMMD-------------GGSA-LSIFWQILPYALLTFGEVLVSATGLEFAYSQAP 435 (524)
T ss_dssp -CCHHHHHTHHHHHHHHHHTTTTTTTTTT-------------TTCC-CCSHHHHHHHHHHHHHHHHHHHHHTTTHHHHCC
T ss_pred CChHHHHHHHHHHHHHHHHHHHHHHHHhc-------------CCCC-cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCc
Confidence 23345566777777666665544321100 0011 456678888999999999999999999999999
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCCCCCcccc-CCCCcchhHHHHHHHHHHHHHHHHHHHhhhccc
Q 007580 496 DAMKSIGSAYAALAGGLGCFAASILNSIIKSVTGNPKKGQPNWLAQ-NINTGRFDYLYWLLAVLSVINFCAFLYSAYRYK 574 (597)
Q Consensus 496 ~~~rg~~~gl~~~~~~lg~~lg~~l~~~v~~~~g~~~~~~~~w~~~-~l~~~~~~~~f~~~a~l~~l~~~~~~~~~~~~~ 574 (597)
++.||.++|++++..++|+.+++.+.+.+.+.++ .+|... +++.+ ...|++.++++++++++++++.++++
T Consensus 436 ~~~~g~~~g~~~~~~~~g~~~g~~~~g~~~~~~~------~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~ 507 (524)
T 2xut_A 436 KAMKGTIMSFWTLSVTVGNLWVLLANVSVKSPTV------TEQIVQTGMSVT--AFQMFFFAGFAILAAIVFALYARSYQ 507 (524)
T ss_dssp TTCCTTTHHHHGGGHHHHHHHHHHHHHHTTSCHH------HHHHHHHHSCHH--HHHHHHHHHHHHHHHHHHC-------
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHhccccc------cccccccccccc--ccHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 9999999999999999999999999998765322 234321 11111 23378888899998888888877776
Q ss_pred ccccC
Q 007580 575 YRSEQ 579 (597)
Q Consensus 575 ~~~~~ 579 (597)
+++.+
T Consensus 508 ~~~~~ 512 (524)
T 2xut_A 508 MQDHY 512 (524)
T ss_dssp -----
T ss_pred cchhh
Confidence 65443
No 3
>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*
Probab=99.95 E-value=2.2e-28 Score=265.61 Aligned_cols=162 Identities=14% Similarity=0.132 Sum_probs=122.0
Q ss_pred HHHHHHHhhCC--------ChHHHHHHHHHHHHHHHHHhhhhHHHhhcccchHHHHHHHHHHHHHHHHHHHHhhhccccC
Q 007580 92 MVTFMFYVMHK--------SFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFM 163 (597)
Q Consensus 92 l~~yl~~~~~~--------s~~~a~~~~~~~~~~~~~~~~~~G~lsD~~~GR~~~~~~~~~l~~~g~~~~~~~~~~~~~~ 163 (597)
..+++.++++. +....+++++.+.++..++++++|+++|| +|||++++++.+++.++.++++++.......
T Consensus 34 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~~G~~iG~~~~G~laDr-~GRk~~l~~~~~l~~i~~i~~a~~~~~~~~~ 112 (491)
T 4gc0_A 34 TVESLNTVFVAPQNLSESAANSLLGFCVASALIGCIIGGALGGYCSNR-FGRRDSLKIAAVLFFISGVGSAWPELGFTSI 112 (491)
T ss_dssp THHHHHHHHTGGGCCCHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHH-TCHHHHHHHHHHHHHHHHHHHHCTTTTTSCS
T ss_pred HHHHHHHHhcCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hcCHHHHHHHHHHHHHHHHHHHHHhhhhhhh
Confidence 34556666532 23456788899999999999999999999 8999999999999999999998642110000
Q ss_pred CCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhhchhhhhhhhhhccCCCCCchhhhhhhhHHHHHHHHHHHHHH
Q 007580 164 PNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAI 243 (597)
Q Consensus 164 ~~~~~c~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~R~~~~~~~~~~~~lg~~ 243 (597)
.. ... -...-.++...++++|+++|+|.|+..+..+.+++|..|++. |++..++++.+..+|..
T Consensus 113 ~~--~~~--------~~~~~a~~~~~l~~~R~l~G~g~G~~~~~~~~~i~E~~p~~~------rg~~~~~~~~~~~~g~~ 176 (491)
T 4gc0_A 113 NP--DNT--------VPVYLAGYVPEFVIYRIIGGIGVGLASMLSPMYIAELAPAHI------RGKLVSFNQFAIIFGQL 176 (491)
T ss_dssp SS--SSS--------CCGGGGGCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCGGG------HHHHHHHHHHHHHHHHH
T ss_pred cc--hhH--------HHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCHHh------hhhhHHhhhhhhhhhhh
Confidence 00 000 000001578899999999999999999999999999999999 99999999999999999
Q ss_pred HHHHHHHHhhhc--------cchHHHHHHHHHHHH
Q 007580 244 VAFTLVVYIQME--------HGWGSAFGALAIAMG 270 (597)
Q Consensus 244 l~p~i~~~i~~~--------~gw~~~f~i~~~~~~ 270 (597)
+++.++..+... .+||+.+.+..+..+
T Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 211 (491)
T 4gc0_A 177 LVYCVNYFIARSGDASWLNTDGWRYMFASECIPAL 211 (491)
T ss_dssp HHHHHHHHHHTTSCTTTTTTTHHHHHHHTTHHHHH
T ss_pred hhhhcchhhccccccccccchhhHHHhhhhhhhhh
Confidence 998888766532 347766665554433
No 4
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=99.94 E-value=9.5e-26 Score=241.58 Aligned_cols=181 Identities=13% Similarity=0.048 Sum_probs=155.8
Q ss_pred CCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHhhhhHHHhhcccchHHHHHHHHH
Q 007580 65 TGGWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTT 144 (597)
Q Consensus 65 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~lsD~~~GR~~~~~~~~~ 144 (597)
+.+|+.++.+++..++..+..+.+.+.++ ++.+++ .+..+.+++.+.+.++..++.+++|+++|| +|||+++.++.+
T Consensus 24 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~-~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr-~g~r~~l~~~~~ 100 (451)
T 1pw4_A 24 RLRWQIFLGIFFGYAAYYLVRKNFALAMP-YLVEQG-FSRGDLGFALSGISIAYGFSKFIMGSVSDR-SNPRVFLPAGLI 100 (451)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTSHHHHHH-HTTSST-TCSSCHHHHHHHHHHHHHHHHHHHHHHHHH-SCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHh-ccHhHHHHHHHHHHHHHHHHHHhHHHHHHh-cCchHHHHHHHH
Confidence 34566777777778888777666666554 555677 999999999999999999999999999999 899999999999
Q ss_pred HHHHHHHHHHH----hhhccccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhhchhhhhhhhhhccCCCCC
Q 007580 145 IYLAGLTGITL----CATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERS 220 (597)
Q Consensus 145 l~~~g~~~~~~----~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~ 220 (597)
+..++.+++++ + .++..++++|++.|++.+...+...++++|.+|+++
T Consensus 101 ~~~~~~~~~~~~~~~~----------------------------~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~ 152 (451)
T 1pw4_A 101 LAAAVMLFMGFVPWAT----------------------------SSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKE 152 (451)
T ss_dssp HHHHHHHHHHHCHHHH----------------------------SSSSHHHHHHHHHHHHHHHTHHHHHHHHHTTCTTTH
T ss_pred HHHHHHHHHHhhhhcc----------------------------ccHHHHHHHHHHHHHHhhhccchHHHHHHHHCCchh
Confidence 99999999988 5 456789999999999999999999999999999988
Q ss_pred chhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhccc-hHHHHHHHHHHHHHHHHHHHHhcCc
Q 007580 221 KDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHG-WGSAFGALAIAMGISNMLFFIGTPL 282 (597)
Q Consensus 221 ~~~~~~R~~~~~~~~~~~~lg~~l~p~i~~~i~~~~g-w~~~f~i~~~~~~~~~~~~~~~~~~ 282 (597)
|++.+++++...++|..++|.+++++.+..| ||+.|++.++..++..++.++..++
T Consensus 153 ------r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~w~~~f~~~~~~~~~~~~~~~~~~~~ 209 (451)
T 1pw4_A 153 ------RGGIVSVWNCAHNVGGGIPPLLFLLGMAWFNDWHAALYMPAFCAILVALFAFAMMRD 209 (451)
T ss_dssp ------HHHHHHHHHHHHHHHHTSHHHHHHHHHHHTCCSTTCTHHHHHHHHHHHHHHHHHCCC
T ss_pred ------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhhccC
Confidence 9999999999999999999999999888888 9999999888776655555444443
No 5
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=99.93 E-value=1.7e-23 Score=223.23 Aligned_cols=180 Identities=12% Similarity=-0.002 Sum_probs=151.8
Q ss_pred CCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHhhhhHHHhhcccchHHHHHHHHH
Q 007580 65 TGGWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTT 144 (597)
Q Consensus 65 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~lsD~~~GR~~~~~~~~~ 144 (597)
+++++.++.+.+..++..+..+.+.+. .+++.+++|++..+.+++.+.+.++..++.+++|+++|| +|||++++++.+
T Consensus 22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr-~g~r~~l~~~~~ 99 (438)
T 3o7q_A 22 RSYIIPFALLCSLFFLWAVANNLNDIL-LPQFQQAFTLTNFQAGLIQSAFYFGYFIIPIPAGILMKK-LSYKAGIITGLF 99 (438)
T ss_dssp CTTHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHSCCCSHHHHHHHHHHHHHHHTTHHHHHHHHHH-SCHHHHHHHHHH
T ss_pred hHhHHHHHHHHHHHHHHHHHHHhHHHH-HHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHH-hcchHHHHHHHH
Confidence 445667777777777777776555444 556888999999999999999999999999999999999 899999999999
Q ss_pred HHHHHHHHHHHhhhccccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhhchhhhhhhhhhccCCCCCchhh
Q 007580 145 IYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYK 224 (597)
Q Consensus 145 l~~~g~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~ 224 (597)
+..++.+++...... ++...++++|++.|++.+...+...++++|.+|+++
T Consensus 100 ~~~~~~~~~~~~~~~-------------------------~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~---- 150 (438)
T 3o7q_A 100 LYALGAALFWPAAEI-------------------------MNYTLFLVGLFIIAAGLGCLETAANPFVTVLGPESS---- 150 (438)
T ss_dssp HHHHHHHHHHHHHHT-------------------------TCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSTT----
T ss_pred HHHHHHHHHHhcccc-------------------------ccHHHHHHHHHHHHhhHHHhhhhHHHHHHHHcCchh----
Confidence 999999988332110 567899999999999999999999999999999999
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHhh-hccc-------------------------hHHHHHHHHHHHHHHHHHHH
Q 007580 225 THLDRFFNFFYLSVTVGAIVAFTLVVYIQ-MEHG-------------------------WGSAFGALAIAMGISNMLFF 277 (597)
Q Consensus 225 ~~R~~~~~~~~~~~~lg~~l~p~i~~~i~-~~~g-------------------------w~~~f~i~~~~~~~~~~~~~ 277 (597)
|++.+++++...++|..++|.+++++. +..+ ||+.|++.++..++..++++
T Consensus 151 --r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~ 227 (438)
T 3o7q_A 151 --GHFRLNLAQTFNSFGAIIAVVFGQSLILSNVPHQSQDVLDKMSPEQLSAYKHSLVLSVQTPYMIIVAIVLLVALLIM 227 (438)
T ss_dssp --HHHHHHHHHHHHHHHHHHHHHHTTHHHHTSSCCCCHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred --HHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccccCCcchhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999988 5544 99999877766555444433
No 6
>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}
Probab=99.89 E-value=1.9e-22 Score=211.05 Aligned_cols=167 Identities=13% Similarity=0.121 Sum_probs=147.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHhhhhHHHhhcccchHHHHHHHHHHHHHHHH
Q 007580 72 LFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLT 151 (597)
Q Consensus 72 ~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~lsD~~~GR~~~~~~~~~l~~~g~~ 151 (597)
+.+++..++..+......+.++. +.+++|.+..+.+++.+.+.++..++.++.|+++|| +|||+++.++.++..++..
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr-~g~r~~~~~~~~~~~~~~~ 80 (375)
T 2gfp_A 3 LMLVLLVAVGQMAQTIYIPAIAD-MARDLNVREGAVQSVMGAYLLTYGVSQLFYGPISDR-VGRRPVILVGMSIFMLATL 80 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH-HHTTSSSTTHHHHHHHHHHHHHHHHHHTTHHHHHTT-SCCCCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhhhHH-HHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCCchhHHHHHHHHHHHHH
Confidence 44556667777776666666544 567899999999999999999999999999999999 8999999999999999999
Q ss_pred HHHHhhhccccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhhchhhhhhhhhhccCCCCCchhhhhhhhHH
Q 007580 152 GITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFF 231 (597)
Q Consensus 152 ~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~R~~~~ 231 (597)
++.++ ++...+++.|++.|++.+...+...+++.|.+|+++ |++.+
T Consensus 81 ~~~~~----------------------------~~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~------~~~~~ 126 (375)
T 2gfp_A 81 VAVTT----------------------------SSLTVLIAASAMQGMGTGVGGVMARTLPRDLYERTQ------LRHAN 126 (375)
T ss_dssp HHHHH----------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSS------CCSHH
T ss_pred HHHHh----------------------------ccHHHHHHHHHHHHHHHHhhhhhHHHHHHHHCCHHH------HHHHH
Confidence 88876 577889999999999999999999999999999998 99999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHH
Q 007580 232 NFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNM 274 (597)
Q Consensus 232 ~~~~~~~~lg~~l~p~i~~~i~~~~gw~~~f~i~~~~~~~~~~ 274 (597)
++++....+|..++|.+++++.+..|||+.|++.++..++..+
T Consensus 127 ~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 169 (375)
T 2gfp_A 127 SLLNMGILVSPLLAPLIGGLLDTMWNWRACYLFLLVLCAGVTF 169 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHhccHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999988999999987776554443
No 7
>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*
Probab=99.84 E-value=3.5e-21 Score=205.06 Aligned_cols=169 Identities=11% Similarity=-0.113 Sum_probs=113.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHhhhhHHHhhcccchHHHHHHHHHHHHHH
Q 007580 70 AALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAG 149 (597)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~lsD~~~GR~~~~~~~~~l~~~g 149 (597)
..+.+.+..++..+++..+.++++.|+++++|++..+.+++.+.+.++..++++++|+++|| +|||++++++.+++.++
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~lsDr-~Grr~~l~~~~~~~~~~ 86 (417)
T 2cfq_A 8 NFWMFGLFFFFYFFIMGAYFPFFPIWLHDINHISKSDTGIIFAAISLFSLLFQPLFGLLSDK-LGLRKYLLWIITGMLVM 86 (417)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTTHHHHHHTTTCCCTTTSHHHHHHHHHHHHHHHHHHHHHHTT-STTCCHHHHHHHHTTSC
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hcchHHHHHHHHHHHHH
Confidence 45555555566666667777889999999999999999999999999999999999999999 89999999988776553
Q ss_pred HHHHHHhhhccccCCCCCcccccccccCCCCCccchhH-HHHHHHHHHHHHhhhchhhhhhhhhhccCCCCCchhhhhhh
Q 007580 150 LTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQM-LYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLD 228 (597)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~-~~l~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~R~ 228 (597)
...+...... ... ..++.++.+.+++.+...+...+...+..++.. +.|+
T Consensus 87 ~~~~~~~~~~-------------------------~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~----~~~~ 137 (417)
T 2cfq_A 87 FAPFFIFIFG-------------------------PLLQYNILVGSIVGGIYLGFCFNAGAPAVEAFIEKVS----RRSN 137 (417)
T ss_dssp HHHHHHHTHH-------------------------HHHHTTCCHHHHGGGSSTTHHHHTTHHHHHHHHHHHH----HHHT
T ss_pred HHHHHHHHHH-------------------------HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhh----hhcc
Confidence 2222110000 000 012233444444443333333333333332211 1156
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhhccchHHHHHHHHHHH
Q 007580 229 RFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAM 269 (597)
Q Consensus 229 ~~~~~~~~~~~lg~~l~p~i~~~i~~~~gw~~~f~i~~~~~ 269 (597)
..++......++|..++|.+++++.+ .+|++.|++.++..
T Consensus 138 ~~~g~~~~~~~~g~~~~~~l~~~l~~-~~~~~~f~~~~~~~ 177 (417)
T 2cfq_A 138 FEFGRARMFGCVGWALGASIVGIMFT-INNQFVFWLGSGCA 177 (417)
T ss_dssp CCHHHHSSSTTTHHHHHHHHHHHHHH-HCSHHHHTTTTTTT
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHH-hchhHHHHHHHHHH
Confidence 66677777788999999999999887 58999998765543
No 8
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=99.51 E-value=2.4e-13 Score=144.94 Aligned_cols=178 Identities=15% Similarity=0.119 Sum_probs=150.5
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHhhhhHHHhhccc--chHHHHHHHHHH
Q 007580 68 WIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYL--GRYWTIAIFTTI 145 (597)
Q Consensus 68 ~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~lsD~~~--GR~~~~~~~~~l 145 (597)
.+.++.+++..++..+.++++..+++.|+++.+|++..+++...+.+.++..++.++.|+++|| + |||+.+.++.++
T Consensus 251 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~-~~~~~~~~~~~~~~~ 329 (451)
T 1pw4_A 251 NKLLWYIAIANVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDK-VFRGNRGATGVFFMT 329 (451)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHBTTBSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-TSTTCHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhcCCchhHHHHHHH
Confidence 3467777778888888889999999999998899999999999999999999999999999999 8 999988887766
Q ss_pred HH-HHHHHHHHhhhccccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhhchhhhhhhhhhccCCCCCchhh
Q 007580 146 YL-AGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYK 224 (597)
Q Consensus 146 ~~-~g~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~ 224 (597)
.. ++.+++.+... .+...+++..++.|++.++..+....++.|.+|+++
T Consensus 330 ~~~~~~~~~~~~~~--------------------------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~---- 379 (451)
T 1pw4_A 330 LVTIATIVYWMNPA--------------------------GNPTVDMICMIVIGFLIYGPVMLIGLHALELAPKKA---- 379 (451)
T ss_dssp HHHHHHHHTTSCCT--------------------------TCHHHHHHHHHHHHHHHTHHHHHHHHHHHHTSCTTH----
T ss_pred HHHHHHHHHHHhcc--------------------------cCHHHHHHHHHHHHHHHhchHHHHHHHHHHHhchhh----
Confidence 55 55544443210 245667777888999999999999999999999998
Q ss_pred hhhhhHHHHHHHHHHH-HHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHHH
Q 007580 225 THLDRFFNFFYLSVTV-GAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFI 278 (597)
Q Consensus 225 ~~R~~~~~~~~~~~~l-g~~l~p~i~~~i~~~~gw~~~f~i~~~~~~~~~~~~~~ 278 (597)
|++.+++++...++ |..++|.+.|++.+..||++.|++.+++.+++.++.+.
T Consensus 380 --~g~~~~~~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~ 432 (451)
T 1pw4_A 380 --AGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLIV 432 (451)
T ss_dssp --HHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSHHHHHHHHHHHHHHHHHHHH
T ss_pred --hhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999 99999999999999999999999888777666655544
No 9
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=99.38 E-value=1.2e-11 Score=131.23 Aligned_cols=165 Identities=10% Similarity=0.004 Sum_probs=133.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-HHHhhCCChHHHHHHHHHHHHHHHHHhhhhHHHhhcccchHHHHHHHHHHHHH
Q 007580 70 AALFIFGNEMAERMAYFGLSVNMVTF-MFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLA 148 (597)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~l~~y-l~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~lsD~~~GR~~~~~~~~~l~~~ 148 (597)
.++..++..++.....+++..+++.| +++.+|.+..+++...+.+.++..++.+++|+++|| +|||+++.++.++..+
T Consensus 259 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r-~~~~~~~~~~~~~~~~ 337 (438)
T 3o7q_A 259 HWRWAVLAQFCYVGAQTACWSYLIRYAVEEIPGMTAGFAANYLTGTMVCFFIGRFTGTWLISR-FAPHKVLAAYALIAMA 337 (438)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-SCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHH-hcchHHHHHHHHHHHH
Confidence 45556666677777778888999999 888889999999999999999999999999999999 8999999999988888
Q ss_pred HHHHHHHhhhccccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhhchhhhhhhhhhccCCCCCchhhhhhh
Q 007580 149 GLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLD 228 (597)
Q Consensus 149 g~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~R~ 228 (597)
+.+++.+. .+... ++..++.|++.+...+...++..|.+|++ |+
T Consensus 338 ~~~~~~~~----------------------------~~~~~-~~~~~~~g~~~~~~~~~~~~~~~~~~~~~-------~~ 381 (438)
T 3o7q_A 338 LCLISAFA----------------------------GGHVG-LIALTLCSAFMSIQYPTIFSLGIKNLGQD-------TK 381 (438)
T ss_dssp HHHHHHHC----------------------------CHHHH-HHHHHHHHHHHTTHHHHHHHHHHSSCGGG-------HH
T ss_pred HHHHHHHc----------------------------CCcHH-HHHHHHHHHHHHHHHHHHHHHHHhhcccc-------cc
Confidence 87776664 22233 34447889999999999999999999844 45
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhhccc-hHHHHHHHHHHHHHH
Q 007580 229 RFFNFFYLSVTVGAIVAFTLVVYIQMEHG-WGSAFGALAIAMGIS 272 (597)
Q Consensus 229 ~~~~~~~~~~~lg~~l~p~i~~~i~~~~g-w~~~f~i~~~~~~~~ 272 (597)
.+.++.. ...+|..++|.+.|++.+..| +++.|++.+++.++.
T Consensus 382 ~~~~~~~-~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~ 425 (438)
T 3o7q_A 382 YGSSFIV-MTIIGGGIVTPVMGFVSDAAGNIPTAELIPALCFAVI 425 (438)
T ss_dssp HHHHHHH-HTTHHHHHHHHHHHHHHHHHTSSGGGGHHHHHHHHHH
T ss_pred chhhHHH-HHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHH
Confidence 5555554 556999999999999999988 999988765544433
No 10
>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*
Probab=99.34 E-value=1.1e-11 Score=131.44 Aligned_cols=176 Identities=10% Similarity=0.055 Sum_probs=128.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCC---hHHHHHHHHHHHHHHHHHhhhhHHHhhcccchHHHHHHHHHHHH
Q 007580 71 ALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKS---FADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYL 147 (597)
Q Consensus 71 ~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s---~~~a~~~~~~~~~~~~~~~~~~G~lsD~~~GR~~~~~~~~~l~~ 147 (597)
.+...+..++....++....+++.|+.+.++.. ....+...+...++..++.+++|+++|| +|||+++.++.++..
T Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr-~g~~~~l~~~~~~~~ 300 (417)
T 2cfq_A 222 LWFLSLYVIGVSCTYDVFDQQFANFFTSFFATGEQGTRVFGYVTTMGELLNASIMFFAPLIINR-IGGKNALLLAGTIMS 300 (417)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSSHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHH-HCHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHH-hcHHHHHHHHHHHHH
Confidence 333333333334444555566788887766532 3344566666667788889999999999 899999988887777
Q ss_pred HHHHHHHHhhhccccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhhchhhhhhhhhhccCCCCCchhhhhh
Q 007580 148 AGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHL 227 (597)
Q Consensus 148 ~g~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~R 227 (597)
++..++++. .+...+++..++.+++.+...+....+.+|.+|++. |
T Consensus 301 ~~~~~~~~~----------------------------~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~------~ 346 (417)
T 2cfq_A 301 VRIIGSSFA----------------------------TSALEVVILKTLHMFEVPFLLVGCFKYITSQFEVRF------S 346 (417)
T ss_dssp HHHHHHTTC----------------------------CSHHHHHHHTTHHHHHHHHHHHHHHHHHHHHSCHHH------H
T ss_pred HHHHHHHHh----------------------------ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHH------H
Confidence 766555443 234456666667777777777777889999999988 9
Q ss_pred hhHHHH-HHHHHHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHhcC
Q 007580 228 DRFFNF-FYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGTP 281 (597)
Q Consensus 228 ~~~~~~-~~~~~~lg~~l~p~i~~~i~~~~gw~~~f~i~~~~~~~~~~~~~~~~~ 281 (597)
++..++ ++....+|..++|.++|++.+..|+...|.+.+++.+++.++.+...+
T Consensus 347 g~~~g~~~~~~~~lg~~~gp~l~G~l~~~~g~~~~f~~~~~~~l~~~~~~~~~~~ 401 (417)
T 2cfq_A 347 ATIYLVCFCFFKQLAMIFMSVLAGNMYESIGFQGAYLVLGLVALGFTLISVFTLS 401 (417)
T ss_dssp HHHHHHHHTTTHHHHHHHHTHHHHTHHHHSHHHHHHHHHHHHHHHHHHHHTTSSC
T ss_pred HHHHHHHHHHHHhHHHHHhhhhHHHHHHhcCcHHHHHHHHHHHHHHHHHHHhhhc
Confidence 999988 577888999999999999998889998888877766666655444333
No 11
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}
Probab=99.16 E-value=8e-11 Score=127.09 Aligned_cols=187 Identities=12% Similarity=0.009 Sum_probs=135.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHhhhhHHHhhcccchHHHHH-----HHHH
Q 007580 70 AALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIA-----IFTT 144 (597)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~lsD~~~GR~~~~~-----~~~~ 144 (597)
..+.+.+..++....+.....+++.|+.+.++.+....+.......++..++.++.|+++|| +|||+... ++.+
T Consensus 284 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r-~~~r~~~~~~~~~~~~~ 362 (491)
T 4aps_A 284 SYIPLFIAAVLFWAIEEQGSVVLATFAAERVDSSWFPVSWFQSLNPLFIMLYTPFFAWLWTA-WKKNQPSSPTKFAVGLM 362 (491)
T ss_dssp THHHHHHHHHHHHHHHGGGGTHHHHHHHHSCCCSSSCSGGGTTHHHHHHHHHHHHHHHHHHH-TTTC---CHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhccHHHHHHHHHHhccCccCHHHHhccchHHHHHHHHHHHHHHHH-HhccCCCchHHHHHHHH
Confidence 34445555555566666677788899998888886677778888888888999999999999 89986554 5666
Q ss_pred HHHHHHHHHHHhhhccccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhhchhhhhhhhhhccCCCCCchhh
Q 007580 145 IYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYK 224 (597)
Q Consensus 145 l~~~g~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~ 224 (597)
+..++..++.+...... ++...+...+++..++.|++.+...+....++.|.+|++.
T Consensus 363 ~~~~~~~~~~~~~~~~~-------------------~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p~~~---- 419 (491)
T 4aps_A 363 FAGLSFLLMAIPGALYG-------------------TSGKVSPLWLVGSWALVILGEMLISPVGLSVTTKLAPKAF---- 419 (491)
T ss_dssp HHHHHHTTTHHHHHHCC-------------------CCTTCCTHHHHHHHHHHHHHHHTTTTHHHHHHHHHTTTTC----
T ss_pred HHHHHHHHHHHHHHhcC-------------------CCCCccHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCCHHH----
Confidence 66666555554321000 0000245567777888999999999999999999999999
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHhcCcc
Q 007580 225 THLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGTPLY 283 (597)
Q Consensus 225 ~~R~~~~~~~~~~~~lg~~l~p~i~~~i~~~~gw~~~f~i~~~~~~~~~~~~~~~~~~~ 283 (597)
|+++.++++...++|..++|.+.+++.+. ++.+.|++.+++.+++.++.+...++.
T Consensus 420 --~g~~~g~~~~~~~~g~~i~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 475 (491)
T 4aps_A 420 --NSQMMSMWFLSSSVGSALNAQLVTLYNAK-SEVAYFSYFGLGSVVLGIVLVFLSKRI 475 (491)
T ss_dssp --SSSSTHHHHHHHHHHHHHHHHHGGGGGGS-STTHHHHHTHHHHHHHHHHHHHC----
T ss_pred --HHHHHHHHHHHHHHHHHHHHHHHHHHhcc-cHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999988764 677778777776666665555544433
No 12
>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*
Probab=99.06 E-value=1.3e-08 Score=109.64 Aligned_cols=188 Identities=9% Similarity=-0.020 Sum_probs=126.9
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHhhhhHHHhhcccchHHHHHHHHHHHH
Q 007580 68 WIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYL 147 (597)
Q Consensus 68 ~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~lsD~~~GR~~~~~~~~~l~~ 147 (597)
++..+......+....+.+.+ .+..+++.+..+.+............+...++.++++++.|| +|||+.++.+.....
T Consensus 276 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr-~Grr~~~~~~~~~~~ 353 (491)
T 4gc0_A 276 GVIVIGVMLSIFQQFVGINVV-LYYAPEVFKTLGASTDIALLQTIIVGVINLTFTVLAIMTVDK-FGRKPLQIIGALGMA 353 (491)
T ss_dssp THHHHHHHHHHHHHHTCHHHH-HHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HCSHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhhhhHH-HhcchHHHHhcCCCccchhhHHHHHHHHHHHHHHHHHHHHHh-hcCcchhccchHHHH
Confidence 333333333333333333333 344566777788888777777777788889999999999999 899999999988888
Q ss_pred HHHHHHHHhhhccccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhhchhhhhhhhhhccCCCCCchhhhhh
Q 007580 148 AGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHL 227 (597)
Q Consensus 148 ~g~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~R 227 (597)
++...++...... . .+...++...+..+....+..+....+.+|.||.+. |
T Consensus 354 ~~~~~l~~~~~~~---~--------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~fPt~~------R 404 (491)
T 4gc0_A 354 IGMFSLGTAFYTQ---A--------------------PGIVALLSMLFYVAAFAMSWGPVCWVLLSEIFPNAI------R 404 (491)
T ss_dssp HHHHHHHHHHHTT---C--------------------CHHHHHHHHHHHHHHHHTTTTHHHHHHHHHSSCTTT------H
T ss_pred HHHHHHHHHHhcc---c--------------------chHHHHHHHHHHHHHHHhHHHHHHHHHHHHhCCHhH------H
Confidence 7777666542210 0 122222222222222233345677789999999999 9
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhhh------ccchHHHHHHHHHHHHHHHHHHHHhcCccccc
Q 007580 228 DRFFNFFYLSVTVGAIVAFTLVVYIQM------EHGWGSAFGALAIAMGISNMLFFIGTPLYRHR 286 (597)
Q Consensus 228 ~~~~~~~~~~~~lg~~l~p~i~~~i~~------~~gw~~~f~i~~~~~~~~~~~~~~~~~~~~~~ 286 (597)
+++.++.+....++..+++.+..++.+ ..++.+.|++.+.+.+++.+..++..|+.+.+
T Consensus 405 ~~~~g~~~~~~~~~~~i~~~~~p~l~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~~~~~PETkg~ 469 (491)
T 4gc0_A 405 GKALAIAVAAQWLANYFVSWTFPMMDKNSWLVAHFHNGFSYWIYGCMGVLAALFMWKFVPETKGK 469 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHTHHHHHCHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHCCCCTTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHheecCCCCC
Confidence 999999999899999888887766543 34566678887777777777777777766543
No 13
>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}
Probab=98.88 E-value=8.7e-10 Score=114.50 Aligned_cols=164 Identities=12% Similarity=-0.101 Sum_probs=126.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHhhhhHHHhhcccchHHHHHHHHHH-HH
Q 007580 69 IAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTI-YL 147 (597)
Q Consensus 69 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~lsD~~~GR~~~~~~~~~l-~~ 147 (597)
+.++...+..++.....+.+..+++.|+++.+|.+..+++.......++..++.++.|+++|| +||+ +..+..+ ..
T Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r-~~~~--~~~~~~~~~~ 275 (375)
T 2gfp_A 199 SGFNCYLLMLIGGLAGIAAFEACSGVLMGAVLGLSSMTVSILFILPIPAAFFGAWFAGRPNKR-FSTL--MWQSVICCLL 275 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCSCSSHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHTTTTH-HHHH--HHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHH--HHHHHHHHHH
Confidence 346666677777788888888899999998899999999999999999999999999999999 7873 2223222 22
Q ss_pred HHHHHHHHhhhccccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhhchhhhhhhhhhccCCCCCchhhhhh
Q 007580 148 AGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHL 227 (597)
Q Consensus 148 ~g~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~R 227 (597)
.+..+...... + ..+...+++..++.|++.+...+...++..|.+| ++ |
T Consensus 276 ~~~~~~~~~~~-----~-------------------~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p-~~------~ 324 (375)
T 2gfp_A 276 AGLLMWIPDWF-----G-------------------VMNVWTLLVPAALFFFGAGMLFPLATSGAMEPFP-FL------A 324 (375)
T ss_dssp TSSSSSHHHHH-----H-------------------HHHHHHHHHHHHHHHHHHHHTSSTTHHHHHTHHH-HH------H
T ss_pred HHHHHHHHhhh-----c-------------------cccHHHHHHHHHHHHHHHHHhhHHHHHHHHHhCC-cc------c
Confidence 22221111100 0 0245566777888999999999999999999998 66 9
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhhhccchHHHHHHHH
Q 007580 228 DRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALA 266 (597)
Q Consensus 228 ~~~~~~~~~~~~lg~~l~p~i~~~i~~~~gw~~~f~i~~ 266 (597)
++.+++++...++|..++|.+.+++.+..+|...+.+.+
T Consensus 325 g~~~g~~~~~~~~g~~~~~~~~g~l~~~~~~~~~~~~~~ 363 (375)
T 2gfp_A 325 GTAGALVGGLQNIGSGVLASLSAMLPQTGQGSLGLLMTL 363 (375)
T ss_dssp HHHHHHHHHHHHHHHHCCSTTCTHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHhcCCcccHHHHHHH
Confidence 999999999999999999999999988878887776543
No 14
>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}
Probab=98.26 E-value=7.9e-07 Score=96.48 Aligned_cols=149 Identities=12% Similarity=0.062 Sum_probs=92.0
Q ss_pred HHHHHHHHHHHHHHHhhhhHHHh----hcccch----HHHHHHHHHHHHHHHHHHHHhhhccccCCCCCcccccccccCC
Q 007580 107 SSNAVNNFLGISQASSVLGGFLA----DAYLGR----YWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGS 178 (597)
Q Consensus 107 a~~~~~~~~~~~~~~~~~~G~ls----D~~~GR----~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~c~~~~~~~~~ 178 (597)
.+.......++..++.++.+++. || .|| ++.+.++.++..++.+++++.....
T Consensus 337 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~------------------ 397 (524)
T 2xut_A 337 PAMMQALNPLLVMLLIPFNNFVLYPAIER-MGVKLTALRKMGAGIAITGLSWIVVGTIQLMM------------------ 397 (524)
T ss_dssp HHHHHTTSGGGHHHHGGGTTTC-------------CCHHHHHTHHHHHHHHHHTTTTTTTTT------------------
T ss_pred HHHHHHHHHHHHHHhHHHHHhhhHHHHHh-cCCCCChHHHHHHHHHHHHHHHHHHHHHHHHh------------------
Confidence 34444444444455555555553 44 343 2455666666666655554431000
Q ss_pred CCCccchhHHHHHHHHHHHHHhhhchhhhhhhhhhccCCCCCchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhcc--
Q 007580 179 CEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEH-- 256 (597)
Q Consensus 179 ~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~R~~~~~~~~~~~~lg~~l~p~i~~~i~~~~-- 256 (597)
..+...+...+++..++.|++.+...+...+++.|.+|++. |++.+++++...++|..++|.+.+++.+..
T Consensus 398 -~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p~~~------~g~~~g~~~~~~~~g~~~g~~~~g~~~~~~~~ 470 (524)
T 2xut_A 398 -DGGSALSIFWQILPYALLTFGEVLVSATGLEFAYSQAPKAM------KGTIMSFWTLSVTVGNLWVLLANVSVKSPTVT 470 (524)
T ss_dssp -TTTCCCCSHHHHHHHHHHHHHHHHHHHHHTTTHHHHCCTTC------CTTTHHHHGGGHHHHHHHHHHHHHHTTSCHHH
T ss_pred -cCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHH------HhHHHHHHHHHHHHHHHHHHHHHHHhcccccc
Confidence 00001244567777889999999999999999999999999 999999999999999999999999988743
Q ss_pred ch---------HHHHHHHHHHHHHHHHHHHHhcC
Q 007580 257 GW---------GSAFGALAIAMGISNMLFFIGTP 281 (597)
Q Consensus 257 gw---------~~~f~i~~~~~~~~~~~~~~~~~ 281 (597)
+| +..|++.+.+.+++.+++++..+
T Consensus 471 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 504 (524)
T 2xut_A 471 EQIVQTGMSVTAFQMFFFAGFAILAAIVFALYAR 504 (524)
T ss_dssp HHHHHHHSCHHHHHHHHHHHHHHHHHHHHC----
T ss_pred cccccccccccccHHHHHHHHHHHHHHHHHHHHH
Confidence 23 33365555555555554444433
Done!