Query 007582
Match_columns 597
No_of_seqs 231 out of 2222
Neff 9.2
Searched_HMMs 29240
Date Mon Mar 25 05:22:22 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007582.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/007582hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4gc0_A D-xylose-proton symport 100.0 1.7E-34 5.7E-39 311.8 16.1 433 33-552 29-481 (491)
2 4aps_A DI-OR tripeptide H+ sym 100.0 2E-31 7E-36 287.8 31.3 449 8-540 6-478 (491)
3 2xut_A Proton/peptide symporte 100.0 1.5E-30 5.1E-35 283.5 25.7 478 10-542 7-511 (524)
4 1pw4_A Glycerol-3-phosphate tr 99.9 1.9E-26 6.4E-31 245.6 22.2 400 14-535 27-435 (451)
5 3o7q_A L-fucose-proton symport 99.9 3.5E-24 1.2E-28 227.2 31.8 359 11-490 22-407 (438)
6 2gfp_A EMRD, multidrug resista 99.9 2.1E-22 7.3E-27 209.1 13.9 167 18-211 3-169 (375)
7 2cfq_A Lactose permease; trans 99.8 1.1E-21 3.7E-26 207.3 9.0 396 14-539 6-405 (417)
8 1pw4_A Glycerol-3-phosphate tr 99.4 4.7E-12 1.6E-16 134.0 15.6 178 14-215 251-432 (451)
9 3o7q_A L-fucose-proton symport 99.2 9.5E-11 3.3E-15 123.5 14.2 168 14-210 257-426 (438)
10 2cfq_A Lactose permease; trans 99.1 7.1E-11 2.4E-15 124.1 9.1 174 16-215 221-398 (417)
11 4aps_A DI-OR tripeptide H+ sym 99.0 5.2E-10 1.8E-14 119.8 10.5 185 16-218 284-473 (491)
12 4gc0_A D-xylose-proton symport 98.9 2.3E-08 7.9E-13 106.9 17.2 182 17-219 278-465 (491)
13 2gfp_A EMRD, multidrug resista 98.8 2.1E-09 7.1E-14 110.8 3.1 163 15-202 199-362 (375)
14 2xut_A Proton/peptide symporte 98.1 1.1E-05 3.8E-10 86.7 12.7 135 354-532 59-197 (524)
No 1
>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*
Probab=100.00 E-value=1.7e-34 Score=311.85 Aligned_cols=433 Identities=12% Similarity=0.036 Sum_probs=256.6
Q ss_pred HhHHhHHHHcccccC--------CchhhHHHHHHHHHHHHHhHhhhhHHHhhhccchhHHHHHHHHHHHHHHHHHHHHhh
Q 007582 33 ANGISMVLYFKNEMH--------FDLAGASNTLTNFFGSTFLLCLVGGFISDTFLSRFATCLIFGTLEVLALVMLTIQAY 104 (597)
Q Consensus 33 ~v~~~~~~yl~~~l~--------~~~~~~~~i~~~~~~~~~~~~~~~G~l~D~~~Gr~~~i~~~~~~~~ig~~l~~~~~~ 104 (597)
++++...+++.++++ .+..+.+++++++.+|..++++++|+++|| +|||++++++.+++.+++++++.+..
T Consensus 29 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~~G~~iG~~~~G~laDr-~GRk~~l~~~~~l~~i~~i~~a~~~~ 107 (491)
T 4gc0_A 29 AVISGTVESLNTVFVAPQNLSESAANSLLGFCVASALIGCIIGGALGGYCSNR-FGRRDSLKIAAVLFFISGVGSAWPEL 107 (491)
T ss_dssp HGGGGTHHHHHHHHTGGGCCCHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHH-TCHHHHHHHHHHHHHHHHHHHHCTTT
T ss_pred HHHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hcCHHHHHHHHHHHHHHHHHHHHHhh
Confidence 445545555554442 234567899999999999999999999999 89999999999999999999986431
Q ss_pred cccCCCCCCCCCCcCCchhHHHHHHHHHHHHhccccCcccchhhhcccCCCCCchhhhhhhhHHHHHHHHHHHHHHHHhh
Q 007582 105 SKNLHPPDCGKSSCLKGAIAAYFYGSLYLYSFGCGGNRGTLPAFGAGQFDENDPKGAKALASYFNFYLLATTVAAVIGVT 184 (597)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~g~g~g~~~~~~~~~~~e~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~ 184 (597)
......... .-...-..+..+++++|+++|+|.|+..+..+++++|.+|++. |++..++++.+..+|..+++.
T Consensus 108 ~~~~~~~~~-~~~~~~a~~~~~l~~~R~l~G~g~G~~~~~~~~~i~E~~p~~~------rg~~~~~~~~~~~~g~~~~~~ 180 (491)
T 4gc0_A 108 GFTSINPDN-TVPVYLAGYVPEFVIYRIIGGIGVGLASMLSPMYIAELAPAHI------RGKLVSFNQFAIIFGQLLVYC 180 (491)
T ss_dssp TTSCSSSSS-SCCGGGGGCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCGGG------HHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhcchh-HHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCHHh------hhhhHHhhhhhhhhhhhhhhh
Confidence 110000000 0000002367899999999999999999999999999999665 999999999999999999887
Q ss_pred hheeeec--------ccchhHHHHHHHHHHHHHHHHHHhhccceeecCCCCChhHHHHHHHHHHHHhcCCCCCCCchhhh
Q 007582 185 GIVYVFT--------EKSWWLGFLVSSVANFIGLIALAAGKCLYRIQQPGESPLVRVAQVLVVAIKNRKLSLPDNPEELY 256 (597)
Q Consensus 185 ~~~~~~~--------~~~w~~~f~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~ 256 (597)
++..+.. ...||+.+.+..+..++..+..+. .||+|+++.
T Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------------------------~peSp~~L~ 228 (491)
T 4gc0_A 181 VNYFIARSGDASWLNTDGWRYMFASECIPALLFLMLLYT--------------------------------VPESPRWLM 228 (491)
T ss_dssp HHHHHHTTSCTTTTTTTHHHHHHHTTHHHHHHHHHHGGG--------------------------------SCCCHHHHH
T ss_pred cchhhccccccccccchhhHHHhhhhhhhhhhhhhhhhc--------------------------------CCCChHHHH
Confidence 7654432 245777776665554433332221 233333333
Q ss_pred hhhhhhhcccc-cccCCCCc--cchhh-hcccCCCCCCCCCCccccccchhHHHHHHHhHhhHHHHHHHhHhhhcccchh
Q 007582 257 EINEKERASTW-ERIPHANQ--FRCLD-KAAIMPKDSAVAAPWRVCTVTQVEEVKILTRMMPILASTILMNTCLAQLQTF 332 (597)
Q Consensus 257 ~~~~~~~~~~~-~~~~~~~~--~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~s~ 332 (597)
..++.+++.+. .+....+. ....+ +.....++ ..... ......++.........+++..+.....++..
T Consensus 229 ~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 301 (491)
T 4gc0_A 229 SRGKQEQAEGILRKIMGNTLATQAVQEIKHSLDHGR--KTGGR-----LLMFGVGVIVIGVMLSIFQQFVGINVVLYYAP 301 (491)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHTTH-----HHHSCCTHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HcCchhHHHHhHHHhcCCchhHHHHHHHHHHHHhhh--hhhhH-----HHHhcccHHHHHHHHHHHHHHhhhhHHHhcch
Confidence 22221111111 00000000 00000 00000000 00000 00000112222333333344433333333343
Q ss_pred HHhhhhhcCCCCCcccccCCcccchhhHHHHHHHHhhhhhHHHhhhhhcCCCCCCCchHHHHHHHHHHHHHHHHHHHHHH
Q 007582 333 SITQGAAMDPHLGSIKVPTSSIPVIPLLFMSILLPLYEFFFVPFARKITGHPSGITQLQRVGIGLVLSAVSMTVAGLVEV 412 (597)
Q Consensus 333 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~l~~~~~~~~~rr~~~~~~~~~~~~~~~~G~~~~~i~~~~~~~~~~ 412 (597)
.+.+..+.+.. ..........+..++...+...+.|++|||+. +..+...++++++..+....
T Consensus 302 ~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~l~dr~Grr~~-----------~~~~~~~~~~~~~~l~~~~~ 364 (491)
T 4gc0_A 302 EVFKTLGASTD------IALLQTIIVGVINLTFTVLAIMTVDKFGRKPL-----------QIIGALGMAIGMFSLGTAFY 364 (491)
T ss_dssp HHHHHSSCCHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHH-----------HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhcCCCcc------chhhHHHHHHHHHHHHHHHHHHHHHhhcCcch-----------hccchHHHHHHHHHHHHHHh
Confidence 33332222211 11112233344444555556666667788864 45666666666666554421
Q ss_pred HHhhcccCCCCccchHHHHHHHHHHHHHHHHHHhhhHHHhhhhccCcchhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhc
Q 007582 413 IRRNAFNETPPKQISLFWLSFQYCIFGIADMFTFIGLLEFFYKEAPAGMKTLASSFTYLSLSFGYFLSSAFVDIINAVTK 492 (597)
Q Consensus 413 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~P~~~r~~~~~~~~~~~~l~~~i~~~~~~~i~~~~~ 492 (597)
. ....+..++..+++.......+.+..+.+..|++|.+.|++++|+.+..+++++++++.+.|.+.....
T Consensus 365 ~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~fPt~~R~~~~g~~~~~~~~~~~i~~~~~p~l~~~~~ 434 (491)
T 4gc0_A 365 T----------QAPGIVALLSMLFYVAAFAMSWGPVCWVLLSEIFPNAIRGKALAIAVAAQWLANYFVSWTFPMMDKNSW 434 (491)
T ss_dssp T----------TCCHHHHHHHHHHHHHHHHTTTTHHHHHHHHHSSCTTTHHHHHHHHHHHHHHHHHHHHTHHHHHCHHHH
T ss_pred c----------ccchHHHHHHHHHHHHHHHhHHHHHHHHHHHHhCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1 112333334344444455556678889999999999999999999999999999999998887643211
Q ss_pred ccCCCCCCCccCCCCCCchhHHHHHHHHHHHHHHHHHHHHhhcccccccCCCCCCCCCCC
Q 007582 493 RITPSKQGWLHGKDINKNNVNLFYWFLAIVSVLNLVLYLYAAAWYKYKPENCSDIKPKPL 552 (597)
Q Consensus 493 ~~~~~~~gw~~~~~~~~~~~~~~f~~~~~~~~~~~v~~~~~~~~~~~~~~e~~~~~~~~~ 552 (597)
... ..+..+.|++++++++++.++.+++.||||+|++||+|+.++++
T Consensus 435 ---------~~~----~~~~~~~~~i~~~~~~~~~i~~~~~~PETkg~tLeei~~~f~~~ 481 (491)
T 4gc0_A 435 ---------LVA----HFHNGFSYWIYGCMGVLAALFMWKFVPETKGKTLEELEALWEPE 481 (491)
T ss_dssp ---------HHH----HHTTCHHHHHHHHHHHHHHHHHHHHCCCCTTCCHHHHGGGTC--
T ss_pred ---------HHh----hhhhhHHHHHHHHHHHHHHHHHHheecCCCCCCHHHHHHHhCCC
Confidence 100 01122458899999999999999999999999999999988654
No 2
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}
Probab=100.00 E-value=2e-31 Score=287.76 Aligned_cols=449 Identities=17% Similarity=0.237 Sum_probs=299.1
Q ss_pred hhhcCCchhHHHHHHHHHHHHHHHHHhHHhHHHHcccc-----cCCchhhHHHHHHHHHHHHHhHhhhhHHHhhhccchh
Q 007582 8 IKQKGGFRACTFVFVFSALENMGFIANGISMVLYFKNE-----MHFDLAGASNTLTNFFGSTFLLCLVGGFISDTFLSRF 82 (597)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~yl~~~-----l~~~~~~~~~i~~~~~~~~~~~~~~~G~l~D~~~Gr~ 82 (597)
.+.++++|..+.++...+++++++|++.++++.|+.+. +|.+..+.+++.+.+.++..++.+++|+++||++|||
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~g~r 85 (491)
T 4aps_A 6 KTFFGQPLGLSTLFMTEMWERFSYYGMRAILLYYMWFLISTGDLHITRATAASIMAIYASMVYLSGTIGGFVADRIIGAR 85 (491)
T ss_dssp -----CTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCHH
T ss_pred hhhhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccccch
Confidence 34466789999999999999999999999999999988 9999999999999999999999999999999944999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcccCCCCCCCCCCcCCchhHHHHHHHHHHHHhccccCcccchhhhcccCCCCCchhhh
Q 007582 83 ATCLIFGTLEVLALVMLTIQAYSKNLHPPDCGKSSCLKGAIAAYFYGSLYLYSFGCGGNRGTLPAFGAGQFDENDPKGAK 162 (597)
Q Consensus 83 ~~i~~~~~~~~ig~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~g~g~g~~~~~~~~~~~e~~~~~~~~~~~ 162 (597)
+++.++.++..++.+++++++ +.+.++++|+++|+|.|...+...++++|++|++++
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~~-------------------~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~---- 142 (491)
T 4aps_A 86 PAVFWGGVLIMLGHIVLALPF-------------------GASALFGSIILIIIGTGFLKPNVSTLVGTLYDEHDR---- 142 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHSCC-------------------STTHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSCTT----
T ss_pred HHHHHHHHHHHHHHHHHHHhh-------------------hHHHHHHHHHHHHHHHHhccchHHHHHHHHcCcccc----
Confidence 999999999999999888765 345799999999999999999999999999997652
Q ss_pred hhhhHHHHHHHHHHHHHHHHhhhheeeecccchhHHHHHHHHHHHHHHHHHHhhccceeecC---CCC-ChhHHHHHHH-
Q 007582 163 ALASYFNFYLLATTVAAVIGVTGIVYVFTEKSWWLGFLVSSVANFIGLIALAAGKCLYRIQQ---PGE-SPLVRVAQVL- 237 (597)
Q Consensus 163 ~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~w~~~f~i~~~~~~~~~~~~~~~~~~~~~~~---~~~-~~~~~~~~~~- 237 (597)
+|+..+++++...++|..++|.+++++.+..+||++|++.++..+++.++++...+++..++ ++. .+..+..+..
T Consensus 143 ~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 222 (491)
T 4aps_A 143 RRDAGFSIFVFGINLGAFIAPLIVGAAQEAAGYHVAFSLAAIGMFIGLLVYYFGGKKTLDPHYLRPTDPLAPEEVKPLLV 222 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHTTCCSCCSCCSCCCSHHHHHHHHH
T ss_pred cceeeehHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhCcccccccccCCCCccccchhHHHHH
Confidence 27788999999999999999999999988899999999987777666666555444432221 111 1111111100
Q ss_pred -------------HHHHHhcCCCCCCCchhhhhhhhhhhcccccccCCCCccchhhhcccCCCCCCCCCCccccccchhH
Q 007582 238 -------------VVAIKNRKLSLPDNPEELYEINEKERASTWERIPHANQFRCLDKAAIMPKDSAVAAPWRVCTVTQVE 304 (597)
Q Consensus 238 -------------~~~~~~~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 304 (597)
.........+ .+.+........... ...+..+ ...+. .....
T Consensus 223 ~~g~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~-----------~~~~~~~--~~~~~-----------~~~~~ 277 (491)
T 4aps_A 223 KVSLAVAGFIAIIVVMNLVGWNS-LPAYINLLTIVAIAI-----------PVFYFAW--MISSV-----------KVTST 277 (491)
T ss_dssp HCCCCCHHHHHHHHHHHHHSSCC-TTHHHHHHHHHHHHH-----------HHHHHHH--HC-------------------
T ss_pred HHHHHHHHHHHHHHHHHhccCcc-cccchhhhhHHHHHH-----------HHHHHHH--Hhhcc-----------cccHH
Confidence 0001111110 000000000000000 0000000 00000 00011
Q ss_pred HHHHHHhHhhHHHHHHHhHhhhcccchhHHhhhhh-cCCCCCcccccCCcccchhhHHHHHHHHhhhhhHHHhhhhhcCC
Q 007582 305 EVKILTRMMPILASTILMNTCLAQLQTFSITQGAA-MDPHLGSIKVPTSSIPVIPLLFMSILLPLYEFFFVPFARKITGH 383 (597)
Q Consensus 305 ~~~~~~~~~~l~~~~~~~~~~~~~~~s~~~~~~~~-~~~~~~~~~~~~~~~~~~~~i~~i~~~~l~~~~~~~~~rr~~~~ 383 (597)
++++......++.....++..+.+..+.+..+... .+.+ ....+.....+.+..++..++.+++.|+++||..
T Consensus 278 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~r~~-- 351 (491)
T 4aps_A 278 EHLRVVSYIPLFIAAVLFWAIEEQGSVVLATFAAERVDSS----WFPVSWFQSLNPLFIMLYTPFFAWLWTAWKKNQP-- 351 (491)
T ss_dssp ----CTTHHHHHHHHHHHHHHHGGGGTHHHHHHHHSCCCS----SSCSGGGTTHHHHHHHHHHHHHHHHHHHTTTC----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHhccC----ccCHHHHhccchHHHHHHHHHHHHHHHHHhccCC--
Confidence 22333333444444455555555555544333222 1111 1345666677788888888999998888887753
Q ss_pred CCCCCchHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCccchHHHHHHHHHHHHHHHHHHhhhHHHhhhhccCcchhh
Q 007582 384 PSGITQLQRVGIGLVLSAVSMTVAGLVEVIRRNAFNETPPKQISLFWLSFQYCIFGIADMFTFIGLLEFFYKEAPAGMKT 463 (597)
Q Consensus 384 ~~~~~~~~~~~~G~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~P~~~r~ 463 (597)
....++.+|.+++++++++........ .. ....+.+++++.+++.+++.....+..+.++.|.+|++.|+
T Consensus 352 ----~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~---~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p~~~~g 421 (491)
T 4aps_A 352 ----SSPTKFAVGLMFAGLSFLLMAIPGALY---GT---SGKVSPLWLVGSWALVILGEMLISPVGLSVTTKLAPKAFNS 421 (491)
T ss_dssp -----CHHHHHHHHHHHHHHHTTTHHHHHHC---CC---CTTCCTHHHHHHHHHHHHHHHTTTTHHHHHHHHHTTTTCSS
T ss_pred ----CchHHHHHHHHHHHHHHHHHHHHHHhc---CC---CCCccHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCCHHHHH
Confidence 455667788888888887776653211 00 01345667778888999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhcccCCCCCCCccCCCCCCchhHHHHHHHHHHHHHHHHHHHHhhcccccc
Q 007582 464 LASSFTYLSLSFGYFLSSAFVDIINAVTKRITPSKQGWLHGKDINKNNVNLFYWFLAIVSVLNLVLYLYAAAWYKYK 540 (597)
Q Consensus 464 ~~~~~~~~~~~l~~~i~~~~~~~i~~~~~~~~~~~~gw~~~~~~~~~~~~~~f~~~~~~~~~~~v~~~~~~~~~~~~ 540 (597)
.++++.+....+++.+++.+.+.+.+ .+....|.+++++++++.++.+++.++.+++
T Consensus 422 ~~~g~~~~~~~~g~~i~~~~~~~~~~--------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 478 (491)
T 4aps_A 422 QMMSMWFLSSSVGSALNAQLVTLYNA--------------------KSEVAYFSYFGLGSVVLGIVLVFLSKRIQGL 478 (491)
T ss_dssp SSTHHHHHHHHHHHHHHHHHGGGGGG--------------------SSTTHHHHHTHHHHHHHHHHHHHC-------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhc--------------------ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999998888766532 1223457888888888888777777665544
No 3
>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}
Probab=99.97 E-value=1.5e-30 Score=283.45 Aligned_cols=478 Identities=18% Similarity=0.286 Sum_probs=288.2
Q ss_pred hcCCchhHHHHHHHHHHHHHHHHHhHHhHHHHcccccC------CchhhHHHHHHHHHHHHHhHhhhhHHHhhhcc-chh
Q 007582 10 QKGGFRACTFVFVFSALENMGFIANGISMVLYFKNEMH------FDLAGASNTLTNFFGSTFLLCLVGGFISDTFL-SRF 82 (597)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~yl~~~l~------~~~~~~~~i~~~~~~~~~~~~~~~G~l~D~~~-Gr~ 82 (597)
.++++|.++.+.+..++.++++|++.++++.|+.+++| ++..+.+++.+++.++..++.+++|+++|| + |||
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr-~~g~r 85 (524)
T 2xut_A 7 APKWPRQIPYIIASEACERFSFYGMRNILTPFLMTALLLSIPEELRGAVAKDVFHSFVIGVYFFPLLGGWIADR-FFGKY 85 (524)
T ss_dssp ------CCTHHHHHHHHHHHHHHHHHHHHHHHHHHSCSSCCSSSTTTTTHHHHHHHHHHHHHHTHHHHHHHHTT-SSCSH
T ss_pred cccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-Hhcch
Confidence 35567888899999999999999999999999999999 999999999999999999999999999999 8 999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcccCCCCCCCCCCcCCchhHHHHHHHHHHHHhccccCcccchhhhcccCCCCCchhhh
Q 007582 83 ATCLIFGTLEVLALVMLTIQAYSKNLHPPDCGKSSCLKGAIAAYFYGSLYLYSFGCGGNRGTLPAFGAGQFDENDPKGAK 162 (597)
Q Consensus 83 ~~i~~~~~~~~ig~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~g~g~g~~~~~~~~~~~e~~~~~~~~~~~ 162 (597)
+++.++.++..++.++++++. .+.+.++++|++.|+|.|...+...++++|.+|+++ +.
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~~------------------~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~---r~ 144 (524)
T 2xut_A 86 NTILWLSLIYCVGHAFLAIFE------------------HSVQGFYTGLFLIALGSGGIKPLVSSFMGDQFDQSN---KS 144 (524)
T ss_dssp HHHHHHHHHHHHHHHHHHHTS------------------SCHHHHHHHHHHHHHHHHTTHHHHHHHHHHTCSTTT---TT
T ss_pred HHHHHHHHHHHHHHHHHHHhc------------------ccHHHHHHHHHHHHHhccccchhHHHHHHHHcCccc---hH
Confidence 999999999999999888764 135678999999999999999999999999999766 11
Q ss_pred hhhhHHHHHHHHHHHHHHHHhhhheeeecccchhHHHHHHHHHHHHHHHHHHhhccceeecCCCCChhHHHHHHHHHHHH
Q 007582 163 ALASYFNFYLLATTVAAVIGVTGIVYVFTEKSWWLGFLVSSVANFIGLIALAAGKCLYRIQQPGESPLVRVAQVLVVAIK 242 (597)
Q Consensus 163 ~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~w~~~f~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (597)
++...+++++...++|..++|.+++++.+..+|+++|++.+++.+++.++++...+++..+++++++..+..+.+....+
T Consensus 145 ~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 224 (524)
T 2xut_A 145 LAQKAFDMFYFTINFGSFFASLSMPLLLKNFGAAVAFGIPGVLMFVATVFFWLGRKRYIHMPPEPKDPHGFLPVIRSALL 224 (524)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTSTHHHHTSCHHHHHHHHHHHHHHHHHHHHSSSSSCCCCC------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHHhcccccccCCCCccchhHHHHHHHHHh
Confidence 22455666999999999999999999888889999999988877766666555555443333322222221122222222
Q ss_pred hcCCCCCCCchhhhhhhhhhhcccc-cccCC-----------------CCccch--hhhcccCCCCCCCCCCccccccch
Q 007582 243 NRKLSLPDNPEELYEINEKERASTW-ERIPH-----------------ANQFRC--LDKAAIMPKDSAVAAPWRVCTVTQ 302 (597)
Q Consensus 243 ~~~~~~p~~~~~l~~~~~~~~~~~~-~~~~~-----------------~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~ 302 (597)
+++.+ ++......+.......... ..... ..+.+| .++.+... ....
T Consensus 225 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~ 291 (524)
T 2xut_A 225 TKVEG-KGNIGLVLALIGGVSAAYALVNIPTLGIVAGLCCAMVLVMGFVGAGASLQLERARKSH------------PDAA 291 (524)
T ss_dssp --CTT-HHHHHHHHHHHHHHHHHHTGGGTTTTCSSHHHHHHHHHHHHHHHTGGGTHHHHSCCSC------------CSSS
T ss_pred hhhcc-cCccchhhhhhhhhhhhhhhcccchhhhhhhhhhhhhhhhcccccchhhHHhhhhccc------------cHhH
Confidence 21110 0000000000000000000 00000 000011 11110000 0001
Q ss_pred hHHHHHHHhHhhHHHHHHHhHhhhcccchhHHhhhhhcCCCCCcccccCCcccchhhHHHHHHHHhhhhhHHHhhhhhcC
Q 007582 303 VEEVKILTRMMPILASTILMNTCLAQLQTFSITQGAAMDPHLGSIKVPTSSIPVIPLLFMSILLPLYEFFFVPFARKITG 382 (597)
Q Consensus 303 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~l~~~~~~~~~rr~~~ 382 (597)
.+++++.+....++.....++..+.+..+.+..+....+... + ...+.+...+.+..++..++.+++..+..+|...
T Consensus 292 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 368 (524)
T 2xut_A 292 VDGVRSVLRILVLFALVTPFWSLFDQKASTWILQANDMVKPQ--W-FEPAMMQALNPLLVMLLIPFNNFVLYPAIERMGV 368 (524)
T ss_dssp STTTTTHHHHHHHHTTSHHHHTTTSSTTTHHHHHHHHSCCCS--S-SCHHHHHTTSGGGHHHHGGGTTTC----------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccchhhHHhHHhcCCCe--e-ecHHHHHHHHHHHHHHhHHHHHhhhHHHHHhcCC
Confidence 112233333334444444445555565555555544443221 0 1234455566677788888888876454444322
Q ss_pred CCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCccchHHHHHHHHHHHHHHHHHHhhhHHHhhhhccCcchh
Q 007582 383 HPSGITQLQRVGIGLVLSAVSMTVAGLVEVIRRNAFNETPPKQISLFWLSFQYCIFGIADMFTFIGLLEFFYKEAPAGMK 462 (597)
Q Consensus 383 ~~~~~~~~~~~~~G~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~P~~~r 462 (597)
+ .+..+.+.+|.+++++++++.++..... +.....+.+++++.+++.++++....+..++++.+.+|++.|
T Consensus 369 ~---~~~~~~~~~g~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p~~~~ 439 (524)
T 2xut_A 369 K---LTALRKMGAGIAITGLSWIVVGTIQLMM------DGGSALSIFWQILPYALLTFGEVLVSATGLEFAYSQAPKAMK 439 (524)
T ss_dssp -----CCHHHHHTHHHHHHHHHHTTTTTTTTT------TTTCCCCSHHHHHHHHHHHHHHHHHHHHHTTTHHHHCCTTCC
T ss_pred C---CChHHHHHHHHHHHHHHHHHHHHHHHHh------cCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHH
Confidence 1 3455667778777777766554431000 000123556777788999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccCCCCCCCccCCCCCCchhHHHHHHHHHHHHHHHHHHHHhhcccccccC
Q 007582 463 TLASSFTYLSLSFGYFLSSAFVDIINAVTKRITPSKQGWLHGKDINKNNVNLFYWFLAIVSVLNLVLYLYAAAWYKYKPE 542 (597)
Q Consensus 463 ~~~~~~~~~~~~l~~~i~~~~~~~i~~~~~~~~~~~~gw~~~~~~~~~~~~~~f~~~~~~~~~~~v~~~~~~~~~~~~~~ 542 (597)
+.++|+.++..++++.+++.+.+.+.+... .+|....+. +...+.|++++++++++.++++++.+++++++.
T Consensus 440 g~~~g~~~~~~~~g~~~g~~~~g~~~~~~~------~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 511 (524)
T 2xut_A 440 GTIMSFWTLSVTVGNLWVLLANVSVKSPTV------TEQIVQTGM--SVTAFQMFFFAGFAILAAIVFALYARSYQMQDH 511 (524)
T ss_dssp TTTHHHHGGGHHHHHHHHHHHHHHTTSCHH------HHHHHHHHS--CHHHHHHHHHHHHHHHHHHHHC-----------
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhccccc------ccccccccc--cccccHHHHHHHHHHHHHHHHHHHHHHhccchh
Confidence 999999999999999999999887643110 012100000 011233778888888888877777777665543
No 4
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=99.94 E-value=1.9e-26 Score=245.56 Aligned_cols=400 Identities=11% Similarity=-0.026 Sum_probs=248.1
Q ss_pred chhHHHHHHHHHHHHHHHHHhHHhHHHHcccccCCchhhHHHHHHHHHHHHHhHhhhhHHHhhhccchhHHHHHHHHHHH
Q 007582 14 FRACTFVFVFSALENMGFIANGISMVLYFKNEMHFDLAGASNTLTNFFGSTFLLCLVGGFISDTFLSRFATCLIFGTLEV 93 (597)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~v~~~~~~yl~~~l~~~~~~~~~i~~~~~~~~~~~~~~~G~l~D~~~Gr~~~i~~~~~~~~ 93 (597)
++.++.++...++..+..+.+...+ +++.+++ .+..+.+++.+++.++..++.+++|+++|| +|||+++.++.++..
T Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~-~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr-~g~r~~l~~~~~~~~ 103 (451)
T 1pw4_A 27 WQIFLGIFFGYAAYYLVRKNFALAM-PYLVEQG-FSRGDLGFALSGISIAYGFSKFIMGSVSDR-SNPRVFLPAGLILAA 103 (451)
T ss_dssp HHHHHHHHHHHHHHHHHHTSHHHHH-HHTTSST-TCSSCHHHHHHHHHHHHHHHHHHHHHHHHH-SCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHh-ccHhHHHHHHHHHHHHHHHHHHhHHHHHHh-cCchHHHHHHHHHHH
Confidence 4555566666666665555444444 4556667 899999999999999999999999999999 899999999999999
Q ss_pred HHHHHHHH----HhhcccCCCCCCCCCCcCCchhHHHHHHHHHHHHhccccCcccchhhhcccCCCCCchhhhhhhhHHH
Q 007582 94 LALVMLTI----QAYSKNLHPPDCGKSSCLKGAIAAYFYGSLYLYSFGCGGNRGTLPAFGAGQFDENDPKGAKALASYFN 169 (597)
Q Consensus 94 ig~~l~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~g~g~g~~~~~~~~~~~e~~~~~~~~~~~~r~~~~~ 169 (597)
++.+++++ +.+ .+.++++|+++|+|.|...+...++++|.+|+++ |++.++
T Consensus 104 ~~~~~~~~~~~~~~~-------------------~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~------r~~~~~ 158 (451)
T 1pw4_A 104 AVMLFMGFVPWATSS-------------------IAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKE------RGGIVS 158 (451)
T ss_dssp HHHHHHHHCHHHHSS-------------------SSHHHHHHHHHHHHHHHTHHHHHHHHHTTCTTTH------HHHHHH
T ss_pred HHHHHHHhhhhcccc-------------------HHHHHHHHHHHHHHhhhccchHHHHHHHHCCchh------hhHHHH
Confidence 99999988 653 4478999999999999999999999999999665 999999
Q ss_pred HHHHHHHHHHHHHhhhheeeecccc-hhHHHHHHHHHHHHHHHHHHhhccceeecCCCCChhHHHHHHHHHHHHhcCCCC
Q 007582 170 FYLLATTVAAVIGVTGIVYVFTEKS-WWLGFLVSSVANFIGLIALAAGKCLYRIQQPGESPLVRVAQVLVVAIKNRKLSL 248 (597)
Q Consensus 170 ~~~~~~~~g~~~~~~~~~~~~~~~~-w~~~f~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 248 (597)
+.+...++|..++|.+++++.+..+ ||++|++.+++.++..++.+...|+.+......+. .+.
T Consensus 159 ~~~~~~~~g~~~g~~~~~~l~~~~g~w~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------~~~ 222 (451)
T 1pw4_A 159 VWNCAHNVGGGIPPLLFLLGMAWFNDWHAALYMPAFCAILVALFAFAMMRDTPQSCGLPPI----------------EEY 222 (451)
T ss_dssp HHHHHHHHHHTSHHHHHHHHHHHTCCSTTCTHHHHHHHHHHHHHHHHHCCCSSTTTCCCSC----------------TTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhhccCCHhhcCCCCh----------------hhh
Confidence 9999999999999999988777788 99999998877666555544443321111000000 000
Q ss_pred CCCchhhhhhhhhhhcccccccCCCCccchhhhcccCCCCCCCCCCccccccchhHHHHHHHhHhhHHHHHHHhHhhhcc
Q 007582 249 PDNPEELYEINEKERASTWERIPHANQFRCLDKAAIMPKDSAVAAPWRVCTVTQVEEVKILTRMMPILASTILMNTCLAQ 328 (597)
Q Consensus 249 p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 328 (597)
.+. .+.+. ++ ..+ ++..++.....+.-..+.+.......+...........
T Consensus 223 ~~~----~~~~~-------------------~~---~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 273 (451)
T 1pw4_A 223 KND----YPDDY-------------------NE---KAE---QELTAKQIFMQYVLPNKLLWYIAIANVFVYLLRYGILD 273 (451)
T ss_dssp CCC------------------------------------------CCTHHHHHHTSSCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccc----ccccc-------------------hh---hhh---cccccccchHHHHHcCHHHHHHHHHHHHHHHHHHHHHH
Confidence 000 00000 00 000 00000000000000011221111111111111111111
Q ss_pred cchhHHhhhhhcCCCCCcccccCCcccchhhHHHHHHHHhhhhhHHHh--hhhhcCCCCCCCchHHHHHHHHHHH-HHHH
Q 007582 329 LQTFSITQGAAMDPHLGSIKVPTSSIPVIPLLFMSILLPLYEFFFVPF--ARKITGHPSGITQLQRVGIGLVLSA-VSMT 405 (597)
Q Consensus 329 ~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~l~~~~~~~~--~rr~~~~~~~~~~~~~~~~G~~~~~-i~~~ 405 (597)
+.+.+..+..+.+ ....+.......+..++..++..++.|++ +||+. +.++.++.. ++++
T Consensus 274 ~~~~~~~~~~g~~------~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~-----------~~~~~~~~~~~~~~ 336 (451)
T 1pw4_A 274 WSPTYLKEVKHFA------LDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGA-----------TGVFFMTLVTIATI 336 (451)
T ss_dssp HHHHHBTTBSCCC------HHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCHHH-----------HHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCC------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchh-----------HHHHHHHHHHHHHH
Confidence 1111111111111 11123334445566666677777777766 55442 333333333 3333
Q ss_pred HHHHHHHHHhhcccCCCCccchHHHHHHHHHHHHHHHHHHhhhHHHhhhhccCcchhhHHHHHHHHHHHH-HHHHHHHHH
Q 007582 406 VAGLVEVIRRNAFNETPPKQISLFWLSFQYCIFGIADMFTFIGLLEFFYKEAPAGMKTLASSFTYLSLSF-GYFLSSAFV 484 (597)
Q Consensus 406 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~P~~~r~~~~~~~~~~~~l-~~~i~~~~~ 484 (597)
+..+. ...+.+.+....++.+++.....+..+.++.+.+|++.|++++++.+....+ ++.+++.+.
T Consensus 337 ~~~~~-------------~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~~~~~~~~ 403 (451)
T 1pw4_A 337 VYWMN-------------PAGNPTVDMICMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIV 403 (451)
T ss_dssp HTTSC-------------CTTCHHHHHHHHHHHHHHHTHHHHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHh-------------cccCHHHHHHHHHHHHHHHhchHHHHHHHHHHHhchhhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 22211 0123445555566777777777888889999999999999999999999999 999999998
Q ss_pred HHHhhhhcccCCCCCCCccCCCCCCchhHHHHHHHHHHHHHHHHHHHHhhc
Q 007582 485 DIINAVTKRITPSKQGWLHGKDINKNNVNLFYWFLAIVSVLNLVLYLYAAA 535 (597)
Q Consensus 485 ~~i~~~~~~~~~~~~gw~~~~~~~~~~~~~~f~~~~~~~~~~~v~~~~~~~ 535 (597)
+.+.+.. | +...|++.+++++++.++.++..+
T Consensus 404 g~l~~~~--------g-----------~~~~~~~~~~~~~~~~~~~~~~~~ 435 (451)
T 1pw4_A 404 GYTVDFF--------G-----------WDGGFMVMIGGSILAVILLIVVMI 435 (451)
T ss_dssp HHHHHSS--------C-----------SHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhc--------C-----------cHHHHHHHHHHHHHHHHHHHHHHh
Confidence 8775421 1 344577788887777776655543
No 5
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=99.93 E-value=3.5e-24 Score=227.23 Aligned_cols=359 Identities=9% Similarity=-0.005 Sum_probs=229.0
Q ss_pred cCCchhHHHHHHHHHHHHHHHHHhHHhHHHHcccccCCchhhHHHHHHHHHHHHHhHhhhhHHHhhhccchhHHHHHHHH
Q 007582 11 KGGFRACTFVFVFSALENMGFIANGISMVLYFKNEMHFDLAGASNTLTNFFGSTFLLCLVGGFISDTFLSRFATCLIFGT 90 (597)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~yl~~~l~~~~~~~~~i~~~~~~~~~~~~~~~G~l~D~~~Gr~~~i~~~~~ 90 (597)
++.++.+..++...++..+..+ +...+.+++.+++|.+..+.+++.+.+.++..++.++.|+++|| +|||+++.++.+
T Consensus 22 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr-~g~r~~l~~~~~ 99 (438)
T 3o7q_A 22 RSYIIPFALLCSLFFLWAVANN-LNDILLPQFQQAFTLTNFQAGLIQSAFYFGYFIIPIPAGILMKK-LSYKAGIITGLF 99 (438)
T ss_dssp CTTHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHTTHHHHHHHHHH-SCHHHHHHHHHH
T ss_pred hHhHHHHHHHHHHHHHHHHHHH-hHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHH-hcchHHHHHHHH
Confidence 3445555655566666655555 55555566788999999999999999999999999999999999 899999999999
Q ss_pred HHHHHHHHHHHHhhcccCCCCCCCCCCcCCchhHHHHHHHHHHHHhccccCcccchhhhcccCCCCCchhhhhhhhHHHH
Q 007582 91 LEVLALVMLTIQAYSKNLHPPDCGKSSCLKGAIAAYFYGSLYLYSFGCGGNRGTLPAFGAGQFDENDPKGAKALASYFNF 170 (597)
Q Consensus 91 ~~~ig~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~g~g~g~~~~~~~~~~~e~~~~~~~~~~~~r~~~~~~ 170 (597)
+..++.+++..... ..+.+.++++|++.|+|.|...+...++++|.+|+++ |++.+++
T Consensus 100 ~~~~~~~~~~~~~~----------------~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~------r~~~~~~ 157 (438)
T 3o7q_A 100 LYALGAALFWPAAE----------------IMNYTLFLVGLFIIAAGLGCLETAANPFVTVLGPESS------GHFRLNL 157 (438)
T ss_dssp HHHHHHHHHHHHHH----------------TTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSTT------HHHHHHH
T ss_pred HHHHHHHHHHhccc----------------cccHHHHHHHHHHHHhhHHHhhhhHHHHHHHHcCchh------HHHHHHH
Confidence 99999998843221 1257789999999999999999999999999999777 9999999
Q ss_pred HHHHHHHHHHHHhhhheeee-cccc-------------------------hhHHHHHHHHHHHHHHHHHHhhccceeecC
Q 007582 171 YLLATTVAAVIGVTGIVYVF-TEKS-------------------------WWLGFLVSSVANFIGLIALAAGKCLYRIQQ 224 (597)
Q Consensus 171 ~~~~~~~g~~~~~~~~~~~~-~~~~-------------------------w~~~f~i~~~~~~~~~~~~~~~~~~~~~~~ 224 (597)
++...++|..+++.+++++. ...+ ||+.|++.+.+.++..++++.... ++.+
T Consensus 158 ~~~~~~~g~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~--p~~~ 235 (438)
T 3o7q_A 158 AQTFNSFGAIIAVVFGQSLILSNVPHQSQDVLDKMSPEQLSAYKHSLVLSVQTPYMIIVAIVLLVALLIMLTKF--PALQ 235 (438)
T ss_dssp HHHHHHHHHHHHHHHTTHHHHTSSCCCCHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC--CCCT
T ss_pred HHHHHHHHHHHHHHHHHHHHhcccccccccccccCCcchhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHcC--Cccc
Confidence 99999999999999998887 4444 999997766655444443332111 0000
Q ss_pred CCCChhHHHHHHHHHHHHhcCCCCCCCchhhhhhhhhhhcccccccCCCCccchhhhcccCCCCCCCCCCccccccchhH
Q 007582 225 PGESPLVRVAQVLVVAIKNRKLSLPDNPEELYEINEKERASTWERIPHANQFRCLDKAAIMPKDSAVAAPWRVCTVTQVE 304 (597)
Q Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 304 (597)
++.+ ..+... .....+.+ .+++
T Consensus 236 ~~~~-------------------~~~~~~-------------------~~~~~~~~----------------~~~~---- 257 (438)
T 3o7q_A 236 SDNH-------------------SDAKQG-------------------SFSASLSR----------------LARI---- 257 (438)
T ss_dssp TTCC-------------------CCSSTT-------------------SHHHHHHH----------------HTTC----
T ss_pred cccc-------------------cccccc-------------------chhhhHHH----------------HHhC----
Confidence 0000 000000 00000000 0000
Q ss_pred HHHHHHhHhhHHHHHHHhHhhhcccchhH-HhhhhhcCCCCCcccccCCcccchhhHHHHHHHHhhhhhHHHhhhhhcCC
Q 007582 305 EVKILTRMMPILASTILMNTCLAQLQTFS-ITQGAAMDPHLGSIKVPTSSIPVIPLLFMSILLPLYEFFFVPFARKITGH 383 (597)
Q Consensus 305 ~~~~~~~~~~l~~~~~~~~~~~~~~~s~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~l~~~~~~~~~rr~~~~ 383 (597)
+++...................+...+ ..+..+.+.. ..+.......+..++..++..++.|+++||+.
T Consensus 258 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~------~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~-- 327 (438)
T 3o7q_A 258 --RHWRWAVLAQFCYVGAQTACWSYLIRYAVEEIPGMTAG------FAANYLTGTMVCFFIGRFTGTWLISRFAPHKV-- 327 (438)
T ss_dssp --SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCHH------HHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHH--
T ss_pred --hHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCcchh------HHHHHHHHHHHHHHHHHHHHHHHHHHhcchHH--
Confidence 111111111111111111111111222 2221122211 12233334455556666677777777676653
Q ss_pred CCCCCchHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCccchHHHHHHHHHHHHHHHHHHhhhHHHhhhhccCcchhh
Q 007582 384 PSGITQLQRVGIGLVLSAVSMTVAGLVEVIRRNAFNETPPKQISLFWLSFQYCIFGIADMFTFIGLLEFFYKEAPAGMKT 463 (597)
Q Consensus 384 ~~~~~~~~~~~~G~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~P~~~r~ 463 (597)
+.++.+++++++++..+. .+. +.+..+++.+++.....+..+.+..+.+|++ ++
T Consensus 328 ---------~~~~~~~~~~~~~~~~~~---------------~~~-~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~-~~ 381 (438)
T 3o7q_A 328 ---------LAAYALIAMALCLISAFA---------------GGH-VGLIALTLCSAFMSIQYPTIFSLGIKNLGQD-TK 381 (438)
T ss_dssp ---------HHHHHHHHHHHHHHHHHC---------------CHH-HHHHHHHHHHHHHTTHHHHHHHHHHSSCGGG-HH
T ss_pred ---------HHHHHHHHHHHHHHHHHc---------------CCc-HHHHHHHHHHHHHHHHHHHHHHHHHhhcccc-cc
Confidence 445555555555444332 111 2333446677777788889999999999977 89
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 007582 464 LASSFTYLSLSFGYFLSSAFVDIINAV 490 (597)
Q Consensus 464 ~~~~~~~~~~~l~~~i~~~~~~~i~~~ 490 (597)
.+.++.. .+.+++.+++.+.+.+.+.
T Consensus 382 ~~~~~~~-~~~~g~~~~~~~~g~l~~~ 407 (438)
T 3o7q_A 382 YGSSFIV-MTIIGGGIVTPVMGFVSDA 407 (438)
T ss_dssp HHHHHHH-HTTHHHHHHHHHHHHHHHH
T ss_pred chhhHHH-HHHHHHHHHHHHHHHHHHH
Confidence 9999887 6779999999888877654
No 6
>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}
Probab=99.88 E-value=2.1e-22 Score=209.12 Aligned_cols=167 Identities=11% Similarity=0.066 Sum_probs=144.8
Q ss_pred HHHHHHHHHHHHHHHHhHHhHHHHcccccCCchhhHHHHHHHHHHHHHhHhhhhHHHhhhccchhHHHHHHHHHHHHHHH
Q 007582 18 TFVFVFSALENMGFIANGISMVLYFKNEMHFDLAGASNTLTNFFGSTFLLCLVGGFISDTFLSRFATCLIFGTLEVLALV 97 (597)
Q Consensus 18 ~~~~~~~~~~~~~~~~v~~~~~~yl~~~l~~~~~~~~~i~~~~~~~~~~~~~~~G~l~D~~~Gr~~~i~~~~~~~~ig~~ 97 (597)
+.++...++..+......+.++. +.+++|.+..+.+++.+.+.++..++.++.|+++|| +|||+++.++.++..++.+
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr-~g~r~~~~~~~~~~~~~~~ 80 (375)
T 2gfp_A 3 LMLVLLVAVGQMAQTIYIPAIAD-MARDLNVREGAVQSVMGAYLLTYGVSQLFYGPISDR-VGRRPVILVGMSIFMLATL 80 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH-HHTTSSSTTHHHHHHHHHHHHHHHHHHTTHHHHHTT-SCCCCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhhhHH-HHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCCchhHHHHHHHHHHHHH
Confidence 34556666666666655555544 567899999999999999999999999999999999 8999999999999999999
Q ss_pred HHHHHhhcccCCCCCCCCCCcCCchhHHHHHHHHHHHHhccccCcccchhhhcccCCCCCchhhhhhhhHHHHHHHHHHH
Q 007582 98 MLTIQAYSKNLHPPDCGKSSCLKGAIAAYFYGSLYLYSFGCGGNRGTLPAFGAGQFDENDPKGAKALASYFNFYLLATTV 177 (597)
Q Consensus 98 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~g~g~g~~~~~~~~~~~e~~~~~~~~~~~~r~~~~~~~~~~~~~ 177 (597)
+...++ +.+.++++|++.|++.+...+...+++.|.+|+++ |++.+++++...++
T Consensus 81 ~~~~~~-------------------~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~ 135 (375)
T 2gfp_A 81 VAVTTS-------------------SLTVLIAASAMQGMGTGVGGVMARTLPRDLYERTQ------LRHANSLLNMGILV 135 (375)
T ss_dssp HHHHHH-------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSS------CCSHHHHHHHHHHH
T ss_pred HHHHhc-------------------cHHHHHHHHHHHHHHHHhhhhhHHHHHHHHCCHHH------HHHHHHHHHHHHHH
Confidence 988876 56689999999999999999999999999999766 99999999999999
Q ss_pred HHHHHhhhheeeecccchhHHHHHHHHHHHHHHH
Q 007582 178 AAVIGVTGIVYVFTEKSWWLGFLVSSVANFIGLI 211 (597)
Q Consensus 178 g~~~~~~~~~~~~~~~~w~~~f~i~~~~~~~~~~ 211 (597)
|..++|.+++++.+..+||+.|++.+++.++..+
T Consensus 136 g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 169 (375)
T 2gfp_A 136 SPLLAPLIGGLLDTMWNWRACYLFLLVLCAGVTF 169 (375)
T ss_dssp HHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHhhHHHHHHHHHhccHHHHHHHHHHHHHHHHH
Confidence 9999999999998888999999887766554443
No 7
>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*
Probab=99.84 E-value=1.1e-21 Score=207.27 Aligned_cols=396 Identities=9% Similarity=-0.018 Sum_probs=220.4
Q ss_pred chhHHHHHHHHHHHHHHHHHhHHhHHHHcccccCCchhhHHHHHHHHHHHHHhHhhhhHHHhhhccchhHHHHHHHHHHH
Q 007582 14 FRACTFVFVFSALENMGFIANGISMVLYFKNEMHFDLAGASNTLTNFFGSTFLLCLVGGFISDTFLSRFATCLIFGTLEV 93 (597)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~v~~~~~~yl~~~l~~~~~~~~~i~~~~~~~~~~~~~~~G~l~D~~~Gr~~~i~~~~~~~~ 93 (597)
.|..+.+....++..+++..+.++++.|+++++|++..+.+++.+.+.++..++.+++|+++|| +|||++++++.++..
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~lsDr-~Grr~~l~~~~~~~~ 84 (417)
T 2cfq_A 6 NTNFWMFGLFFFFYFFIMGAYFPFFPIWLHDINHISKSDTGIIFAAISLFSLLFQPLFGLLSDK-LGLRKYLLWIITGML 84 (417)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHTTTHHHHHHTTTCCCTTTSHHHHHHHHHHHHHHHHHHHHHHTT-STTCCHHHHHHHHTT
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hcchHHHHHHHHHHH
Confidence 3556667777777777888889999999999999999999999999999999999999999999 899999999988776
Q ss_pred HHHHHH---HHHhhcccCCCCCCCCCCcCCchhHHHHHHHHHHHHhccccCcccchhhhcccCCCCCchhhhhhhhHHHH
Q 007582 94 LALVML---TIQAYSKNLHPPDCGKSSCLKGAIAAYFYGSLYLYSFGCGGNRGTLPAFGAGQFDENDPKGAKALASYFNF 170 (597)
Q Consensus 94 ig~~l~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~g~g~g~~~~~~~~~~~e~~~~~~~~~~~~r~~~~~~ 170 (597)
++.... ..+... ...++.++++.+++.|...+...+...+..++. .++++..++.
T Consensus 85 ~~~~~~~~~~~~~~~------------------~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~----~~~~~~~~g~ 142 (417)
T 2cfq_A 85 VMFAPFFIFIFGPLL------------------QYNILVGSIVGGIYLGFCFNAGAPAVEAFIEKV----SRRSNFEFGR 142 (417)
T ss_dssp SCHHHHHHHTHHHHH------------------HTTCCHHHHGGGSSTTHHHHTTHHHHHHHHHHH----HHHHTCCHHH
T ss_pred HHHHHHHHHHHHHHH------------------HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHh----hhhcccchHH
Confidence 543221 121100 001344566666666555444444444443211 1225666777
Q ss_pred HHHHHHHHHHHHhhhheeeecccchhHHHHHHHHHHHHHHHHHHhhccceeecCCCCChhHHHHHHHHHHHHhcCCCCCC
Q 007582 171 YLLATTVAAVIGVTGIVYVFTEKSWWLGFLVSSVANFIGLIALAAGKCLYRIQQPGESPLVRVAQVLVVAIKNRKLSLPD 250 (597)
Q Consensus 171 ~~~~~~~g~~~~~~~~~~~~~~~~w~~~f~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ 250 (597)
.+...++|..++|.+++++.+ .+|+..|++.++..++..++.+...|+ +++..+ ..+..+
T Consensus 143 ~~~~~~~g~~~~~~l~~~l~~-~~~~~~f~~~~~~~~~~~~~~~~~~~~----~~~~~~---------------~~~~~~ 202 (417)
T 2cfq_A 143 ARMFGCVGWALGASIVGIMFT-INNQFVFWLGSGCALILAVLLFFAKTD----APSSAT---------------VANAVG 202 (417)
T ss_dssp HSSSTTTHHHHHHHHHHHHHH-HCSHHHHTTTTTTTTTHHHHSCSSCCC----CSCSSC---------------SSSSSS
T ss_pred HHHHHHHHHHHHHHHHHHHHH-hchhHHHHHHHHHHHHHHHHHHHcCcc----cccccc---------------cccccc
Confidence 777788999999999888765 589998887655433332222111110 000000 000000
Q ss_pred CchhhhhhhhhhhcccccccCCCCccchhhhcccCCCCCCCCCCccccccchhHHHHHHHhHhhHHHHHHHhHhhhcccc
Q 007582 251 NPEELYEINEKERASTWERIPHANQFRCLDKAAIMPKDSAVAAPWRVCTVTQVEEVKILTRMMPILASTILMNTCLAQLQ 330 (597)
Q Consensus 251 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 330 (597)
. ..++.+..+. .+.++ + ++..............+..+.+..
T Consensus 203 -----------------~---~~~~~~~~~~-------------~~~~~-----~-~~~~~~~~~~~~~~~~~~~~~~~~ 243 (417)
T 2cfq_A 203 -----------------A---NHSAFSLKLA-------------LELFR-----Q-PKLWFLSLYVIGVSCTYDVFDQQF 243 (417)
T ss_dssp -----------------S---CCCCCCHHHH-------------HHHTT-----C-HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred -----------------c---ccccccHHHH-------------HHHhc-----C-CchhhHHHHHHHHHHHHHHHHHHH
Confidence 0 0000000000 00011 1 111111111111111111111111
Q ss_pred hhHHhhhhhcCCCCCcccccCCcccchhhHHHHHHHHhhhhhHHHhhhhhcCCCCCCCchHHHHHHHHHHHHHHHHHHHH
Q 007582 331 TFSITQGAAMDPHLGSIKVPTSSIPVIPLLFMSILLPLYEFFFVPFARKITGHPSGITQLQRVGIGLVLSAVSMTVAGLV 410 (597)
Q Consensus 331 s~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~l~~~~~~~~~rr~~~~~~~~~~~~~~~~G~~~~~i~~~~~~~~ 410 (597)
..+.... .... +......+....++.+..++..++..++.|+++||+. +.++.++++++++..++.
T Consensus 244 ~~~~~~~--~~~~-~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~-----------l~~~~~~~~~~~~~~~~~ 309 (417)
T 2cfq_A 244 ANFFTSF--FATG-EQGTRVFGYVTTMGELLNASIMFFAPLIINRIGGKNA-----------LLLAGTIMSVRIIGSSFA 309 (417)
T ss_dssp HHHHHHT--SSSH-HHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHH-----------HHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHH--Hhcc-CCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcHHHH-----------HHHHHHHHHHHHHHHHHh
Confidence 1111110 1100 0000001222233344445556667777777777753 344555555543333211
Q ss_pred HHHHhhcccCCCCccchHHHHHHHHHHHHHHHHHHhhhHHHhhhhccCcchhhHHHHHH-HHHHHHHHHHHHHHHHHHhh
Q 007582 411 EVIRRNAFNETPPKQISLFWLSFQYCIFGIADMFTFIGLLEFFYKEAPAGMKTLASSFT-YLSLSFGYFLSSAFVDIINA 489 (597)
Q Consensus 411 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~P~~~r~~~~~~~-~~~~~l~~~i~~~~~~~i~~ 489 (597)
.+.+.++...++.+++.....+..+.++.|.+|.+.|+.+.++. +..+++++.+++.+.+.+.+
T Consensus 310 ---------------~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~lg~~~gp~l~G~l~~ 374 (417)
T 2cfq_A 310 ---------------TSALEVVILKTLHMFEVPFLLVGCFKYITSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYE 374 (417)
T ss_dssp ---------------CSHHHHHHHTTHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTHHHHHHHHTHHHHTHHH
T ss_pred ---------------ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHhHHHHHhhhhHHHHHH
Confidence 12233334444455555566667788999999999999999984 77888999999998886643
Q ss_pred hhcccCCCCCCCccCCCCCCchhHHHHHHHHHHHHHHHHHHHHhhccccc
Q 007582 490 VTKRITPSKQGWLHGKDINKNNVNLFYWFLAIVSVLNLVLYLYAAAWYKY 539 (597)
Q Consensus 490 ~~~~~~~~~~gw~~~~~~~~~~~~~~f~~~~~~~~~~~v~~~~~~~~~~~ 539 (597)
. .++...|.+.+++++++.++.+++.+|++.
T Consensus 375 ~-------------------~g~~~~f~~~~~~~l~~~~~~~~~~~~~~~ 405 (417)
T 2cfq_A 375 S-------------------IGFQGAYLVLGLVALGFTLISVFTLSGPGP 405 (417)
T ss_dssp H-------------------SHHHHHHHHHHHHHHHHHHHHTTSSCCSCT
T ss_pred h-------------------cCcHHHHHHHHHHHHHHHHHHHhhhcCCCc
Confidence 1 123445778888888877776665655433
No 8
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=99.37 E-value=4.7e-12 Score=133.99 Aligned_cols=178 Identities=14% Similarity=0.065 Sum_probs=150.9
Q ss_pred chhHHHHHHHHHHHHHHHHHhHHhHHHHcccccCCchhhHHHHHHHHHHHHHhHhhhhHHHhhhcc--chhHHHHHHHHH
Q 007582 14 FRACTFVFVFSALENMGFIANGISMVLYFKNEMHFDLAGASNTLTNFFGSTFLLCLVGGFISDTFL--SRFATCLIFGTL 91 (597)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~v~~~~~~yl~~~l~~~~~~~~~i~~~~~~~~~~~~~~~G~l~D~~~--Gr~~~i~~~~~~ 91 (597)
.|.++..+...++..+.++++..+++.|+++.+|++..+.+.+.+.+.++..++.++.|++.|| + |||+.+.++.++
T Consensus 251 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~-~~~~~~~~~~~~~~~ 329 (451)
T 1pw4_A 251 NKLLWYIAIANVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDK-VFRGNRGATGVFFMT 329 (451)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHBTTBSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-TSTTCHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhcCCchhHHHHHHH
Confidence 3677788888889999999999999999999999999999999999999999999999999999 8 999998888877
Q ss_pred HH-HHHHHHHHHhhcccCCCCCCCCCCcCCchhHHHHHHHHHHHHhccccCcccchhhhcccCCCCCchhhhhhhhHHHH
Q 007582 92 EV-LALVMLTIQAYSKNLHPPDCGKSSCLKGAIAAYFYGSLYLYSFGCGGNRGTLPAFGAGQFDENDPKGAKALASYFNF 170 (597)
Q Consensus 92 ~~-ig~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~g~g~g~~~~~~~~~~~e~~~~~~~~~~~~r~~~~~~ 170 (597)
.. ++.++..... ..+.+.+.+..++.|++.+...+....++.|.+|++. |++.+++
T Consensus 330 ~~~~~~~~~~~~~-----------------~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~------~g~~~~~ 386 (451)
T 1pw4_A 330 LVTIATIVYWMNP-----------------AGNPTVDMICMIVIGFLIYGPVMLIGLHALELAPKKA------AGTAAGF 386 (451)
T ss_dssp HHHHHHHHTTSCC-----------------TTCHHHHHHHHHHHHHHHTHHHHHHHHHHHHTSCTTH------HHHHHHH
T ss_pred HHHHHHHHHHHhc-----------------ccCHHHHHHHHHHHHHHHhchHHHHHHHHHHHhchhh------hhhHHHH
Confidence 66 5555444332 1245667778888999999998888999999999766 9999999
Q ss_pred HHHHHHH-HHHHHhhhheeeecccchhHHHHHHHHHHHHHHHHHHh
Q 007582 171 YLLATTV-AAVIGVTGIVYVFTEKSWWLGFLVSSVANFIGLIALAA 215 (597)
Q Consensus 171 ~~~~~~~-g~~~~~~~~~~~~~~~~w~~~f~i~~~~~~~~~~~~~~ 215 (597)
++...++ |..++|.+.+++.+..+|+..|++.+++.+++.++.+.
T Consensus 387 ~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~ 432 (451)
T 1pw4_A 387 TGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLIV 432 (451)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHSSCSHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHH
Confidence 9999999 99999999999988889999998887776666555443
No 9
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=99.20 E-value=9.5e-11 Score=123.47 Aligned_cols=168 Identities=11% Similarity=0.021 Sum_probs=136.2
Q ss_pred chhHHHHHHHHHHHHHHHHHhHHhHHHH-cccccCCchhhHHHHHHHHHHHHHhHhhhhHHHhhhccchhHHHHHHHHHH
Q 007582 14 FRACTFVFVFSALENMGFIANGISMVLY-FKNEMHFDLAGASNTLTNFFGSTFLLCLVGGFISDTFLSRFATCLIFGTLE 92 (597)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~v~~~~~~y-l~~~l~~~~~~~~~i~~~~~~~~~~~~~~~G~l~D~~~Gr~~~i~~~~~~~ 92 (597)
.|.++..+...++.....+++..+++.| +++.+|++..+++.+.+.+.++..++.+++|+++|| +|||+++.++.++.
T Consensus 257 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r-~~~~~~~~~~~~~~ 335 (438)
T 3o7q_A 257 IRHWRWAVLAQFCYVGAQTACWSYLIRYAVEEIPGMTAGFAANYLTGTMVCFFIGRFTGTWLISR-FAPHKVLAAYALIA 335 (438)
T ss_dssp CSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-SCHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHH-hcchHHHHHHHHHH
Confidence 3566777777788888888999999999 888899999999999999999999999999999999 89999999999888
Q ss_pred HHHHHHHHHHhhcccCCCCCCCCCCcCCchhHHHHHHHHHHHHhccccCcccchhhhcccCCCCCchhhhhhhhHHHHHH
Q 007582 93 VLALVMLTIQAYSKNLHPPDCGKSSCLKGAIAAYFYGSLYLYSFGCGGNRGTLPAFGAGQFDENDPKGAKALASYFNFYL 172 (597)
Q Consensus 93 ~ig~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~g~g~g~~~~~~~~~~~e~~~~~~~~~~~~r~~~~~~~~ 172 (597)
.++.++..... +.. .+...++.|++.+...+...++..|.+|++ ++...++..
T Consensus 336 ~~~~~~~~~~~-------------------~~~-~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~ 388 (438)
T 3o7q_A 336 MALCLISAFAG-------------------GHV-GLIALTLCSAFMSIQYPTIFSLGIKNLGQD-------TKYGSSFIV 388 (438)
T ss_dssp HHHHHHHHHCC-------------------HHH-HHHHHHHHHHHHTTHHHHHHHHHHSSCGGG-------HHHHHHHHH
T ss_pred HHHHHHHHHcC-------------------CcH-HHHHHHHHHHHHHHHHHHHHHHHHhhcccc-------ccchhhHHH
Confidence 88877766653 222 234447889999999999999999998832 455555544
Q ss_pred HHHHHHHHHHhhhheeeecccc-hhHHHHHHHHHHHHHH
Q 007582 173 LATTVAAVIGVTGIVYVFTEKS-WWLGFLVSSVANFIGL 210 (597)
Q Consensus 173 ~~~~~g~~~~~~~~~~~~~~~~-w~~~f~i~~~~~~~~~ 210 (597)
...+|..++|.+.+++.+..| ++..|.+.+++.++..
T Consensus 389 -~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~ 426 (438)
T 3o7q_A 389 -MTIIGGGIVTPVMGFVSDAAGNIPTAELIPALCFAVIF 426 (438)
T ss_dssp -HTTHHHHHHHHHHHHHHHHHTSSGGGGHHHHHHHHHHH
T ss_pred -HHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHH
Confidence 556999999999999988888 8988887665544443
No 10
>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*
Probab=99.13 E-value=7.1e-11 Score=124.13 Aligned_cols=174 Identities=9% Similarity=-0.040 Sum_probs=124.4
Q ss_pred hHHHHHHHHHHHHHHHHHhHHhHHHHcccccCC---chhhHHHHHHHHHHHHHhHhhhhHHHhhhccchhHHHHHHHHHH
Q 007582 16 ACTFVFVFSALENMGFIANGISMVLYFKNEMHF---DLAGASNTLTNFFGSTFLLCLVGGFISDTFLSRFATCLIFGTLE 92 (597)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~v~~~~~~yl~~~l~~---~~~~~~~i~~~~~~~~~~~~~~~G~l~D~~~Gr~~~i~~~~~~~ 92 (597)
.++..+...++....++.....++.|+.+.++. +....+...++..++..++.+++|+++|| +|||+++.++.++.
T Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr-~g~~~~l~~~~~~~ 299 (417)
T 2cfq_A 221 KLWFLSLYVIGVSCTYDVFDQQFANFFTSFFATGEQGTRVFGYVTTMGELLNASIMFFAPLIINR-IGGKNALLLAGTIM 299 (417)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSSHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHH-HCHHHHHHHHHHHH
T ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHH-hcHHHHHHHHHHHH
Confidence 344444444444445555556677787666553 23445666666777788889999999999 89999999888877
Q ss_pred HHHHHHHHHHhhcccCCCCCCCCCCcCCchhHHHHHHHHHHHHhccccCcccchhhhcccCCCCCchhhhhhhhHHHH-H
Q 007582 93 VLALVMLTIQAYSKNLHPPDCGKSSCLKGAIAAYFYGSLYLYSFGCGGNRGTLPAFGAGQFDENDPKGAKALASYFNF-Y 171 (597)
Q Consensus 93 ~ig~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~g~g~g~~~~~~~~~~~e~~~~~~~~~~~~r~~~~~~-~ 171 (597)
.++.++.+... +...+++..++.+++.+...+....+.+|.+|++. |++.+++ +
T Consensus 300 ~~~~~~~~~~~-------------------~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~------~g~~~g~~~ 354 (417)
T 2cfq_A 300 SVRIIGSSFAT-------------------SALEVVILKTLHMFEVPFLLVGCFKYITSQFEVRF------SATIYLVCF 354 (417)
T ss_dssp HHHHHHHTTCC-------------------SHHHHHHHTTHHHHHHHHHHHHHHHHHHHHSCHHH------HHHHHHHHH
T ss_pred HHHHHHHHHhc-------------------cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHH------HHHHHHHHH
Confidence 77665554332 34456666677777777777777889999999544 8888888 4
Q ss_pred HHHHHHHHHHHhhhheeeecccchhHHHHHHHHHHHHHHHHHHh
Q 007582 172 LLATTVAAVIGVTGIVYVFTEKSWWLGFLVSSVANFIGLIALAA 215 (597)
Q Consensus 172 ~~~~~~g~~~~~~~~~~~~~~~~w~~~f~i~~~~~~~~~~~~~~ 215 (597)
+....+|..++|.+++++.+..++...|.+.+++.+++.++.+.
T Consensus 355 ~~~~~lg~~~gp~l~G~l~~~~g~~~~f~~~~~~~l~~~~~~~~ 398 (417)
T 2cfq_A 355 CFFKQLAMIFMSVLAGNMYESIGFQGAYLVLGLVALGFTLISVF 398 (417)
T ss_dssp TTTHHHHHHHHTHHHHTHHHHSHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHhHHHHHhhhhHHHHHHhcCcHHHHHHHHHHHHHHHHHHHh
Confidence 67778999999999998887778888888877776666554433
No 11
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}
Probab=99.03 E-value=5.2e-10 Score=119.83 Aligned_cols=185 Identities=9% Similarity=-0.052 Sum_probs=136.1
Q ss_pred hHHHHHHHHHHHHHHHHHhHHhHHHHcccccCCchhhHHHHHHHHHHHHHhHhhhhHHHhhhccchhHHHH-----HHHH
Q 007582 16 ACTFVFVFSALENMGFIANGISMVLYFKNEMHFDLAGASNTLTNFFGSTFLLCLVGGFISDTFLSRFATCL-----IFGT 90 (597)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~v~~~~~~yl~~~l~~~~~~~~~i~~~~~~~~~~~~~~~G~l~D~~~Gr~~~i~-----~~~~ 90 (597)
..+.+....++....++.....++.|+.+.++.+..+.+.+.+...++..++.++.|++.|| +|||+... ++.+
T Consensus 284 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r-~~~r~~~~~~~~~~~~~ 362 (491)
T 4aps_A 284 SYIPLFIAAVLFWAIEEQGSVVLATFAAERVDSSWFPVSWFQSLNPLFIMLYTPFFAWLWTA-WKKNQPSSPTKFAVGLM 362 (491)
T ss_dssp THHHHHHHHHHHHHHHGGGGTHHHHHHHHSCCCSSSCSGGGTTHHHHHHHHHHHHHHHHHHH-TTTC---CHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhccHHHHHHHHHHhccCccCHHHHhccchHHHHHHHHHHHHHHHH-HhccCCCchHHHHHHHH
Confidence 34445555666666777777888889988888876778888888888999999999999999 89986655 6777
Q ss_pred HHHHHHHHHHHHhhcccCCCCCCCCCCcCCchhHHHHHHHHHHHHhccccCcccchhhhcccCCCCCchhhhhhhhHHHH
Q 007582 91 LEVLALVMLTIQAYSKNLHPPDCGKSSCLKGAIAAYFYGSLYLYSFGCGGNRGTLPAFGAGQFDENDPKGAKALASYFNF 170 (597)
Q Consensus 91 ~~~ig~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~g~g~g~~~~~~~~~~~e~~~~~~~~~~~~r~~~~~~ 170 (597)
+..++.++.......... +...+.+.+.+..++.|+|.+...+...+++.|.+|++. |++..++
T Consensus 363 ~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p~~~------~g~~~g~ 426 (491)
T 4aps_A 363 FAGLSFLLMAIPGALYGT----------SGKVSPLWLVGSWALVILGEMLISPVGLSVTTKLAPKAF------NSQMMSM 426 (491)
T ss_dssp HHHHHHTTTHHHHHHCCC----------CTTCCTHHHHHHHHHHHHHHHTTTTHHHHHHHHHTTTTC------SSSSTHH
T ss_pred HHHHHHHHHHHHHHhcCC----------CCCccHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCCHHH------HHHHHHH
Confidence 777776666554311000 001245567788889999999999999999999999877 9999999
Q ss_pred HHHHHHHHHHHHhhhheeeecccchhHHHHHHHHHHHHHHHHHHhhcc
Q 007582 171 YLLATTVAAVIGVTGIVYVFTEKSWWLGFLVSSVANFIGLIALAAGKC 218 (597)
Q Consensus 171 ~~~~~~~g~~~~~~~~~~~~~~~~w~~~f~i~~~~~~~~~~~~~~~~~ 218 (597)
++...++|..+++.+.+++.+ .++...|.+.+.+.+++.++.+...+
T Consensus 427 ~~~~~~~g~~i~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 473 (491)
T 4aps_A 427 WFLSSSVGSALNAQLVTLYNA-KSEVAYFSYFGLGSVVLGIVLVFLSK 473 (491)
T ss_dssp HHHHHHHHHHHHHHHGGGGGG-SSTTHHHHHTHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHHHHHHHHhc-ccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999888765 35666777766665555555544433
No 12
>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*
Probab=98.90 E-value=2.3e-08 Score=106.88 Aligned_cols=182 Identities=8% Similarity=-0.069 Sum_probs=119.1
Q ss_pred HHHHHHHHHHHHHHHHHhHHhHHHHcccccCCchhhHHHHHHHHHHHHHhHhhhhHHHhhhccchhHHHHHHHHHHHHHH
Q 007582 17 CTFVFVFSALENMGFIANGISMVLYFKNEMHFDLAGASNTLTNFFGSTFLLCLVGGFISDTFLSRFATCLIFGTLEVLAL 96 (597)
Q Consensus 17 ~~~~~~~~~~~~~~~~~v~~~~~~yl~~~l~~~~~~~~~i~~~~~~~~~~~~~~~G~l~D~~~Gr~~~i~~~~~~~~ig~ 96 (597)
........++..+..+.......+++.+..+.+............+...++.++++++.|| +|||+.++.+.....++.
T Consensus 278 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr-~Grr~~~~~~~~~~~~~~ 356 (491)
T 4gc0_A 278 IVIGVMLSIFQQFVGINVVLYYAPEVFKTLGASTDIALLQTIIVGVINLTFTVLAIMTVDK-FGRKPLQIIGALGMAIGM 356 (491)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HCSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhhHHHhcchHHHHhcCCCccchhhHHHHHHHHHHHHHHHHHHHHHh-hcCcchhccchHHHHHHH
Confidence 3333343444333333333444455566677777777777777788888999999999999 899999999998888877
Q ss_pred HHHHHHhhcccCCCCCCCCCCcCCchhHHHHHHHHHHHHhccccCcccchhhhcccCCCCCchhhhhhhhHHHHHHHHHH
Q 007582 97 VMLTIQAYSKNLHPPDCGKSSCLKGAIAAYFYGSLYLYSFGCGGNRGTLPAFGAGQFDENDPKGAKALASYFNFYLLATT 176 (597)
Q Consensus 97 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~g~g~g~~~~~~~~~~~e~~~~~~~~~~~~r~~~~~~~~~~~~ 176 (597)
+..+....... ...........+..+++. ...+....+.+|++|++. |++.+++.+...+
T Consensus 357 ~~l~~~~~~~~-------------~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~E~fPt~~------R~~~~g~~~~~~~ 416 (491)
T 4gc0_A 357 FSLGTAFYTQA-------------PGIVALLSMLFYVAAFAM-SWGPVCWVLLSEIFPNAI------RGKALAIAVAAQW 416 (491)
T ss_dssp HHHHHHHHTTC-------------CHHHHHHHHHHHHHHHHT-TTTHHHHHHHHHSSCTTT------HHHHHHHHHHHHH
T ss_pred HHHHHHHhccc-------------chHHHHHHHHHHHHHHHh-HHHHHHHHHHHHhCCHhH------HHHHHHHHHHHHH
Confidence 76665432111 111222222222333333 345667789999999887 9999999998899
Q ss_pred HHHHHHhhhheeeec------ccchhHHHHHHHHHHHHHHHHHHhhccc
Q 007582 177 VAAVIGVTGIVYVFT------EKSWWLGFLVSSVANFIGLIALAAGKCL 219 (597)
Q Consensus 177 ~g~~~~~~~~~~~~~------~~~w~~~f~i~~~~~~~~~~~~~~~~~~ 219 (597)
+|+.+++.+.+.+.+ ..++...|++.+.+.+++.++.++..||
T Consensus 417 ~~~~i~~~~~p~l~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~~~~~PE 465 (491)
T 4gc0_A 417 LANYFVSWTFPMMDKNSWLVAHFHNGFSYWIYGCMGVLAALFMWKFVPE 465 (491)
T ss_dssp HHHHHHHTHHHHHCHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHheecC
Confidence 999888877655532 2345567777666666666655555553
No 13
>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}
Probab=98.76 E-value=2.1e-09 Score=110.80 Aligned_cols=163 Identities=10% Similarity=-0.053 Sum_probs=126.4
Q ss_pred hhHHHHHHHHHHHHHHHHHhHHhHHHHcccccCCchhhHHHHHHHHHHHHHhHhhhhHHHhhhccchhHHHHHHHHH-HH
Q 007582 15 RACTFVFVFSALENMGFIANGISMVLYFKNEMHFDLAGASNTLTNFFGSTFLLCLVGGFISDTFLSRFATCLIFGTL-EV 93 (597)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~v~~~~~~yl~~~l~~~~~~~~~i~~~~~~~~~~~~~~~G~l~D~~~Gr~~~i~~~~~~-~~ 93 (597)
|.++......++.....+++..+++.|+++.+|.+..+.+.+.+...++..++.++.|++.|| +||+ +.++..+ ..
T Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r-~~~~--~~~~~~~~~~ 275 (375)
T 2gfp_A 199 SGFNCYLLMLIGGLAGIAAFEACSGVLMGAVLGLSSMTVSILFILPIPAAFFGAWFAGRPNKR-FSTL--MWQSVICCLL 275 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCSCSSHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHTTTTH-HHHH--HHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHH--HHHHHHHHHH
Confidence 556677777888888888999999999998899999999999999999999999999999999 7882 3333333 22
Q ss_pred HHHHHHHHHhhcccCCCCCCCCCCcCCchhHHHHHHHHHHHHhccccCcccchhhhcccCCCCCchhhhhhhhHHHHHHH
Q 007582 94 LALVMLTIQAYSKNLHPPDCGKSSCLKGAIAAYFYGSLYLYSFGCGGNRGTLPAFGAGQFDENDPKGAKALASYFNFYLL 173 (597)
Q Consensus 94 ig~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~g~g~g~~~~~~~~~~~e~~~~~~~~~~~~r~~~~~~~~~ 173 (597)
.+..+...... + ..+.+.+++..++.|++.+...+...++..|.+| ++ |++..++.+.
T Consensus 276 ~~~~~~~~~~~-~--------------~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p-~~------~g~~~g~~~~ 333 (375)
T 2gfp_A 276 AGLLMWIPDWF-G--------------VMNVWTLLVPAALFFFGAGMLFPLATSGAMEPFP-FL------AGTAGALVGG 333 (375)
T ss_dssp TSSSSSHHHHH-H--------------HHHHHHHHHHHHHHHHHHHHTSSTTHHHHHTHHH-HH------HHHHHHHHHH
T ss_pred HHHHHHHHhhh-c--------------cccHHHHHHHHHHHHHHHHHhhHHHHHHHHHhCC-cc------cchHHHHHHH
Confidence 33222111110 0 1145567778889999999999999999999987 43 8999999999
Q ss_pred HHHHHHHHHhhhheeeecccchhHHHHHH
Q 007582 174 ATTVAAVIGVTGIVYVFTEKSWWLGFLVS 202 (597)
Q Consensus 174 ~~~~g~~~~~~~~~~~~~~~~w~~~f~i~ 202 (597)
..++|..+++.+.+.+.+..+|+..+.+.
T Consensus 334 ~~~~g~~~~~~~~g~l~~~~~~~~~~~~~ 362 (375)
T 2gfp_A 334 LQNIGSGVLASLSAMLPQTGQGSLGLLMT 362 (375)
T ss_dssp HHHHHHHCCSTTCTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcCCcccHHHHHH
Confidence 99999999999988887766777666553
No 14
>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}
Probab=98.15 E-value=1.1e-05 Score=86.71 Aligned_cols=135 Identities=12% Similarity=0.084 Sum_probs=91.9
Q ss_pred ccchhhHHHHHHHHhhhhhHHHh-hhhhcCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCccchHHHHH
Q 007582 354 IPVIPLLFMSILLPLYEFFFVPF-ARKITGHPSGITQLQRVGIGLVLSAVSMTVAGLVEVIRRNAFNETPPKQISLFWLS 432 (597)
Q Consensus 354 ~~~~~~i~~i~~~~l~~~~~~~~-~rr~~~~~~~~~~~~~~~~G~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 432 (597)
+.....+...+..++..++.|++ +||+. +.++.++.+++.++..+. +.+.+.++
T Consensus 59 ~~~~~~~~~~~~~~~~G~l~dr~~g~r~~-----------~~~~~~~~~~~~~~~~~~--------------~~~~~~~~ 113 (524)
T 2xut_A 59 VFHSFVIGVYFFPLLGGWIADRFFGKYNT-----------ILWLSLIYCVGHAFLAIF--------------EHSVQGFY 113 (524)
T ss_dssp HHHHHHHHHHHTHHHHHHHHTTSSCSHHH-----------HHHHHHHHHHHHHHHHHT--------------SSCHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcchHH-----------HHHHHHHHHHHHHHHHHh--------------cccHHHHH
Confidence 33445566666777788887777 77654 556666666666555432 11455666
Q ss_pred HHHHHHHHHHHHHhhhHHHhhhhccCcchhhHHHHH---HHHHHHHHHHHHHHHHHHHhhhhcccCCCCCCCccCCCCCC
Q 007582 433 FQYCIFGIADMFTFIGLLEFFYKEAPAGMKTLASSF---TYLSLSFGYFLSSAFVDIINAVTKRITPSKQGWLHGKDINK 509 (597)
Q Consensus 433 ~~~~~~~~~~~~~~~~~~~~~~~~~P~~~r~~~~~~---~~~~~~l~~~i~~~~~~~i~~~~~~~~~~~~gw~~~~~~~~ 509 (597)
...++.+++.+...+....++.+.+|++.|++..++ ......+|..+++.+.+.+.+. .||
T Consensus 114 ~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~--------~g~-------- 177 (524)
T 2xut_A 114 TGLFLIALGSGGIKPLVSSFMGDQFDQSNKSLAQKAFDMFYFTINFGSFFASLSMPLLLKN--------FGA-------- 177 (524)
T ss_dssp HHHHHHHHHHHTTHHHHHHHHHHTCSTTTTTHHHHHHHHHHHHHHHHHHHHHHTSTHHHHT--------SCH--------
T ss_pred HHHHHHHHhccccchhHHHHHHHHcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc--------ccH--------
Confidence 777888999999999999999999999999887777 7777777777777766554321 123
Q ss_pred chhHHHHHHHHHHHHHHHHHHHH
Q 007582 510 NNVNLFYWFLAIVSVLNLVLYLY 532 (597)
Q Consensus 510 ~~~~~~f~~~~~~~~~~~v~~~~ 532 (597)
.+.|++.+++.++..++.++
T Consensus 178 ---~~~f~~~~~~~~~~~~~~~~ 197 (524)
T 2xut_A 178 ---AVAFGIPGVLMFVATVFFWL 197 (524)
T ss_dssp ---HHHHHHHHHHHHHHHHHHHS
T ss_pred ---HHHHHHHHHHHHHHHHHHHH
Confidence 34577666666655554433
Done!